BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780784|ref|YP_003065197.1| polynucleotide
phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str.
psy62]
         (699 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 1433 bits (3710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/699 (100%), Positives = 699/699 (100%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT
Sbjct: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH
Sbjct: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
           DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG
Sbjct: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL
Sbjct: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA
Sbjct: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE
Sbjct: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP
Sbjct: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS
Sbjct: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS
Sbjct: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL
Sbjct: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT
Sbjct: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV
Sbjct: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699


>gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 699

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/698 (84%), Positives = 641/698 (91%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDVHTVE++WAGRPLKLETGRIA+QSDGAVLATYGETVVLATVV+DR+LK  QDFFPLT
Sbjct: 1   MFDVHTVEVDWAGRPLKLETGRIAQQSDGAVLATYGETVVLATVVFDRNLKKDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYAVGKIPGGYLRRESRPTENE+LISRMIDRSIRPLF K YKNETQVIINVMQH
Sbjct: 61  VNYQERTYAVGKIPGGYLRRESRPTENEVLISRMIDRSIRPLFPKHYKNETQVIINVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
           DLE+ PHVVSMVA SAALMLSGLPFEGP+ GAQVDY++ +YVLNP LD ++GSLDLFVSG
Sbjct: 121 DLENDPHVVSMVAVSAALMLSGLPFEGPIAGAQVDYVDDKYVLNPPLDGEKGSLDLFVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T+DAVLMVELEANQLSEDVVLDAI+FGH ECKPVIEAISKL KMCAKEPI  DSKD SKL
Sbjct: 181 TRDAVLMVELEANQLSEDVVLDAIMFGHAECKPVIEAISKLVKMCAKEPIFFDSKDLSKL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           EEEM  M   DLR S FIPEK VRC+ I+D+K+K+ S+F +E SSW E E+ SVFED+ A
Sbjct: 241 EEEMFHMFGADLRNSSFIPEKSVRCEAINDIKEKVFSHFCTEDSSWTEEEVSSVFEDMHA 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  +++ K+RMDGRD ETVRDISAQVGLLQRTHGSS F RG TQAIVVVTLGT+EDE
Sbjct: 301 KVVRASIVENKIRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDE 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           QYVDSL+GTQRNDFMMHYNF P + GEV R+GAPSRREIGHGRLARRAIHP+LPQ AQFP
Sbjct: 361 QYVDSLAGTQRNDFMMHYNFFPFSVGEVGRIGAPSRREIGHGRLARRAIHPILPQAAQFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YTLRIVSEIT S+GSSSMATVCG+SLALMDAGVPISKPVAGIAMGLVK+ D F++LSDIS
Sbjct: 421 YTLRIVSEITGSNGSSSMATVCGASLALMDAGVPISKPVAGIAMGLVKEDDQFVVLSDIS 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+EDH GHMDFKV+GTDSGITAMQMDMKI GIS++I+++ALQQ KRGRLHILNEMSKV+S
Sbjct: 481 GEEDHFGHMDFKVSGTDSGITAMQMDMKIRGISKDIIMVALQQGKRGRLHILNEMSKVIS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESRLQLGEFTPRVEIM IPPDQIRNVIG+GGKVIR IVE+TGAKVNIDDDGT+KIASSS 
Sbjct: 541 ESRLQLGEFTPRVEIMVIPPDQIRNVIGVGGKVIRNIVEKTGAKVNIDDDGTIKIASSSP 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AEIEAA EMIR ITDVPEVNKIYKG VVKVMDFGAFV+FCGARDGLVHIS LSTERVAKT
Sbjct: 601 AEIEAACEMIRLITDVPEVNKIYKGHVVKVMDFGAFVNFCGARDGLVHISHLSTERVAKT 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SD+VKEGD VWVKLLDFDDRGKIKLSMKVVDQNTGKPI
Sbjct: 661 SDIVKEGDVVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698


>gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii
           NGR234]
 gi|254782732|sp|C3MC71|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
           NGR234]
          Length = 717

 Score =  972 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/703 (68%), Positives = 573/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQVI+ VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVTVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VVSMVAASAAL LSG+PF GP+ GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+AVLMVE EA +L EDV+L A++FG    +PVI+AI KLA++ AKEP   D +D S 
Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQQGFQPVIDAIIKLAEVAAKEPREFDPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M  + +++LR +  I EK  R   +D +K K+  +F     E+ +    EI SVF+
Sbjct: 241 LENAMLAIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHTAEEIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+ 
Sbjct: 361 GEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ER
Sbjct: 601 SSSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +V
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVV 703


>gi|257096719|sp|B3PXD7|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 712

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/701 (66%), Positives = 569/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L EDV+L A++FGH   +PV++AI KLA++ AKEP     +D+S 
Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E   + +   E+ ++F+ 
Sbjct: 241 LESEMLGLAEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
 gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
          Length = 715

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/701 (66%), Positives = 571/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEIEWAGRPLKLETG++ARQ+DGAV+ATYGET+VLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +L+EDV+L A++FGH   +PVI+AI KLA++ AKEP   + +DFS 
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297
           LE EM  + + +LR +  I EK  R   +D +K K+ ++F  E   + ++  EI +VF+ 
Sbjct: 241 LENEMLGLAETELRTAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYSPEEIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL+QA+ GR HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +
Sbjct: 661 AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEV 701


>gi|222084321|ref|YP_002542850.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
           radiobacter K84]
 gi|254782699|sp|B9JGS9|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
           radiobacter K84]
          Length = 710

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/701 (67%), Positives = 568/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+HTVEIEWAGRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFDIHTVEIEWAGRPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++SMVA SAAL LSG+PF GP+ GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDILSMVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+AVLMVE EA +LSEDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTQEAVLMVESEAKELSEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE EM  + + +LR +    +K  R   +D +K K+ ++F  E     ++   I +VF+ 
Sbjct: 241 LEAEMLSIAEGELRTAYKNTQKAERYAAVDAVKAKVKAHFFPEGVEPKYSAEVIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VG+L RTHGSSLF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD GITA+QMD+KI GI+E IM +AL QAK GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTDGGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ +
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEL 701


>gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae
           WSM419]
 gi|187611291|sp|A6UF34|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae
           WSM419]
          Length = 714

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/702 (67%), Positives = 573/702 (81%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQVII VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VV+MVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ +LDL V+
Sbjct: 121 DLENNPDVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSE+++L A++FG    +PVI+A+ +LA++ AKEP   +  D S 
Sbjct: 181 GTQDAVLMVESEAKELSEEIMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFEPDDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M  + +EDLR +  I EK  R   +D +K K+  +F     E+ +    EI SVF+
Sbjct: 241 LENAMLSIAEEDLRKAYKITEKAQRYAAVDAVKAKVKEHFLPEGVENPAHTAEEIASVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKIAGITEEIMKVALDQAKHGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NIDDDGTVKIA
Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIDDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S  EIEAAR+ I SI   PEV ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ER
Sbjct: 601 SASGKEIEAARKWIHSIVAEPEVGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK I
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEI 702


>gi|15887437|ref|NP_353118.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
           tumefaciens str. C58]
 gi|187470963|sp|A9CKQ7|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 713

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/701 (66%), Positives = 571/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEIEWAGRPLKLETG++ARQ+DGAV+ATYGET+VLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +L+E+++L A++FGH   +PVI+AI KLA++ AKEP   + +DFS 
Sbjct: 181 GTQDAVLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEPEDFSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297
           LE EM  + + +LR +  I EK  R   +D +K K+ ++F  E   + ++  EI +VF+ 
Sbjct: 241 LENEMLGLAETELRTAYKITEKAARYAAVDAVKTKVKAHFLPEEGEAKYSPEEIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL+QA+ GR HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +
Sbjct: 661 AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEV 701


>gi|15963997|ref|NP_384350.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti
           1021]
 gi|307306409|ref|ZP_07586153.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           BL225C]
 gi|307319296|ref|ZP_07598725.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           AK83]
 gi|81635311|sp|Q92SW0|PNP_RHIME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15073173|emb|CAC41681.1| Probable polyribonucleotide nucleotidyltransferase [Sinorhizobium
           meliloti 1021]
 gi|306895132|gb|EFN25889.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           AK83]
 gi|306902251|gb|EFN32848.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           BL225C]
          Length = 717

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/703 (67%), Positives = 573/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQVII VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIITVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VV+MVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ +LDL V+
Sbjct: 121 DLENNPDVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+AVLMVE EA +L EDV+L A++FG    +PVI+A+ +LA++ AKEP   + +D S 
Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFNPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M  + +++LR +  I EK  R   +D +K K+  +F     E+ +    EI +VF+
Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGVENPAHTAEEIAAVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGRD  TVR I A+VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGTD+GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTDAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NIDDDGTVKIA
Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIDDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S  EIEAAR+ I SI   PEV ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ER
Sbjct: 601 SASAKEIEAARKWIHSIVAEPEVGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +V
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVV 703


>gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|123385010|sp|Q1MN44|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 712

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/701 (66%), Positives = 568/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+EDV+L A++FGH   +PV++AI KLA++ AKEP      D+S 
Sbjct: 181 GTYDAVLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E   + +   E+ ++F+ 
Sbjct: 241 LESEMLGLAEGELRNAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGR+ ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 712

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/701 (66%), Positives = 568/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PV++AI KLA++ AKEP      D+S 
Sbjct: 181 GTYDAVLMVESEAKELNEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E   + +   E+ ++F+ 
Sbjct: 241 LETEMLGLAEGELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGR+ ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|190889779|ref|YP_001976321.1| polyribonucleotide nucleotidyltransferase [Rhizobium etli CIAT 652]
 gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
           CIAT 652]
          Length = 706

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/695 (66%), Positives = 564/695 (81%), Gaps = 3/695 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           +EIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLTVNYQE+
Sbjct: 1   MEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 60

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QHDLE++P
Sbjct: 61  TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNP 120

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            ++SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+GT DAV
Sbjct: 121 DILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDAV 180

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           LMVE EA +L EDV+L A++FGH   +PV++AI KLA++ AKEP     +D+S LE EM 
Sbjct: 181 LMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSALESEML 240

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQAKVV 303
            + + +LR +  I +K  R   +D +K K+ ++F  E   + +   E+ ++F+ +QAK+V
Sbjct: 241 GLAEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKHLQAKIV 300

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYV
Sbjct: 301 RWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYV 360

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           DSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTL
Sbjct: 361 DSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTL 420

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDE
Sbjct: 421 RVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDE 480

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K ++ESR
Sbjct: 481 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKAITESR 540

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIASSS  EI
Sbjct: 541 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSSGKEI 600

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERVAKT DV
Sbjct: 601 EAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTQDV 660

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 VKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 695


>gi|86355771|ref|YP_467663.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CFN 42]
 gi|123738432|sp|Q2KE00|PNP_RHIEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86279873|gb|ABC88936.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
           CFN 42]
          Length = 712

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/701 (66%), Positives = 572/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SM+A+SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENNPDILSMIASSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L EDV+L A++FGH   +PV++AI KLA++ AKEP     +D+S+
Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297
           LE EM +  + +LR +  I +K  R   +D +K K+ ++F  E   + +   E+ ++F+ 
Sbjct: 241 LEGEMLKHFEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT+DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTTDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4]
 gi|254782700|sp|B9JYL0|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4]
          Length = 714

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/702 (65%), Positives = 568/702 (80%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+VH+VEIEWAGRPLKLETG+IARQ+DGAVLA+YGETVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNVHSVEIEWAGRPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +L+EDV+L A++FGH   +PVI+AI KLA++ AKEP   + +D S 
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E +   +    I +VF+ 
Sbjct: 241 LEAEMLSIAEAELRDAYKITQKADRYTAVDAVKAKVKAHFFPEGAEPKYTNEVIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KIAS
Sbjct: 541 AITEGRSQLGEFAPRIEVMTIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  EIEAAR+ I SI   PE+  +Y+G VVK  DFGAFV+F G+RDGLVHISQL+ +RV
Sbjct: 601 ASGKEIEAARKWIHSIVAEPEIGVVYEGTVVKTADFGAFVNFFGSRDGLVHISQLAVDRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           AKT DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 AKTQDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIV 702


>gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226702681|sp|B5ZW24|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 712

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/701 (66%), Positives = 566/701 (80%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+E+V+L A++FGH   +PV++AI KLA++ AKEP     +D+S+
Sbjct: 181 GTYDAVLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE EM +  + +LR    I +K  R   +D +K K+ ++F  E     +    I +VF+ 
Sbjct: 241 LEAEMLKHFEAELREGYKITQKADRYAAVDAVKAKVKAHFFPEGVEPKYTAEVIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase/polyadenylase [Bartonella henselae
           str. Houston-1]
 gi|81648398|sp|Q6G5F8|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str.
           Houston-1]
          Length = 733

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  +S K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE++YAVG+IPGGYL+RESRP+ENE LISR+IDR IRPLF+  YKN+TQVI++V+QH
Sbjct: 61  VNYQEKSYAVGRIPGGYLKRESRPSENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA +L ED++L A++FGH   +P+++AI KLA++ AK+P     +D S 
Sbjct: 181 GTENAVLMVESEAQELPEDIMLGAVMFGHKGLQPILDAIIKLAEVAAKDPRDFVPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M +M ++D+R +  I +K  R   +D LK ++++ F   + E   ++  +I +VF+
Sbjct: 241 LETAMLEMAEKDIRKAYTITDKQERYAALDALKTEIINKFMPETEEDCKFSVDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR+ +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT++IA
Sbjct: 541 KALTSARAELSEFSPRIEVMNIAVDKIRDVIGTGGKVIREIVEQTGAKINIEDDGTIRIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  +FGAFV+F G+RDGLVHISQL+TER
Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGVIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTTER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           V KT+DVVKEGD VWVKL+ FD+RGK++LSMK+VDQ TGK I+
Sbjct: 661 VTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQKTGKEII 703


>gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
           DFL-43]
 gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
           DFL-43]
          Length = 706

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/702 (66%), Positives = 561/702 (79%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H VEIEW GRPL LETG++ARQ+DGAV+ATYGETVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFDTHKVEIEWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L SR+IDR +RPLF   YKN+TQ+II VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIITVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++++VAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPESDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+EDV+L A++FGH   +PVI+AI KLA+  AKEP    + D S 
Sbjct: 181 GTNDAVLMVESEAKELAEDVMLGAVMFGHKSFQPVIDAIIKLAEAAAKEPRDFSAPDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           LE EM  M + DLR +    +K  R   ID++K K+  +F+    E   +    I +VF+
Sbjct: 241 LEAEMLSMCEADLRKAYENTDKAARYAAIDEVKAKVKEHFAPAEGEEPRFTSEVIGAVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAKVVR  +L+ K R+DGRD  TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 SLQAKVVRGAILETKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+GT++  FM+HYNF P + GE  R G+P RREIGHG+LA RAI+P++P  
Sbjct: 361 GEDEQYVDSLTGTKKATFMLHYNFPPYSVGETGRTGSPGRREIGHGKLAWRAINPMMPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+DF +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGEDFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI+E IM +AL QA+ GRLHIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTADGITALQMDIKIDGITEEIMKIALSQAEGGRLHILKEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ESR QLGEF PR+E+M IP D+IR+VIG GGK+IR IVE+TGAK+NIDDDGT+KIA
Sbjct: 541 NALTESRGQLGEFAPRIEVMNIPVDKIRDVIGTGGKIIREIVEKTGAKINIDDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAA++ I SI   PEV  IY+G VVKV DFGAFV+F G +DGLVHISQL+ ER
Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGVIYEGTVVKVADFGAFVNFFGPKDGLVHISQLAAER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKTSDVVKEG  VWVKLL FD+RGK++LSMKVVDQ TGK +
Sbjct: 661 VAKTSDVVKEGQKVWVKLLGFDERGKVRLSMKVVDQETGKEV 702


>gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi
           ATCC 49188]
 gi|187610317|sp|A6WWW1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 713

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/703 (65%), Positives = 565/703 (80%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P V+SMVAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FG    +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTADAVLMVESEAQELSEEVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE +M  +++ DLR +  I EK  R   +D  K K  ++F     E   ++  +  +VF+
Sbjct: 241 LEAKMLAVVENDLRDAYKITEKQARYVAVDAAKAKAKAHFFPEGVEEPEFSAEKFATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD +TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGSRIDGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RRE+GHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREVGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTIRSVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGTD+GITA+QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTDNGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K LS SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KALSTSREELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+++R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLASDR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK +V
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEVV 703


>gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium sp. BNC1]
 gi|123161513|sp|Q11BC3|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1]
          Length = 715

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K G DFFPLT
Sbjct: 1   MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQVII V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++SMVAASAAL LSG+PF GPV  A+V Y+ G+Y+LNP LDE  +  LDL V+
Sbjct: 121 DLENDPDILSMVAASAALTLSGVPFMGPVGAARVGYVGGEYILNPHLDEMAETKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA++L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTSDAVLMVESEAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKEPREFLPEDLSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE EM ++++ DLR +  I  K  R   ++  K K+   F    +E   W   ++ +VF+
Sbjct: 241 LEAEMLKVVEADLRDAYKITNKQARYDAVNAAKAKVKEAFLPEGAEAYKWTPEQVATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  +VR I A+VG+L RTHGS++F RG+TQA+VV TLGT
Sbjct: 301 ALQAKIVRWNILDTGSRIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP  
Sbjct: 361 GEDEQYVDSLTGTVKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAP 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L
Sbjct: 421 EQFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM +AL+QAK GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTAEGVTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             LSESR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 NALSESRGELGEFAPRIEVMHIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ ER
Sbjct: 601 SSNGKEIEAARKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAPER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           V KT+DVVKEGD V+VKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VQKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
           as4aup]
 gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
           as4aup]
          Length = 731

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/702 (62%), Positives = 568/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  +S K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE++YAVG+IPGGYL+RESRP+ENE L+SR+IDR IRPLF + YKN+TQVI++V+QH
Sbjct: 61  VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L ED++L A++FGH   +PV++AI KLA++ AK+P     +D S+
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE+ M +M ++D+R +  I +K  R   ID LK ++++ F   + E   ++  +I +VF+
Sbjct: 241 LEKAMQKMAEQDIRKAYTITDKQERYAAIDALKTEILNKFMPETEEDCKFSADQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD + R+DGR+  TVR I ++V +L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRGNILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  R G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRFGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT+KIA
Sbjct: 541 KALTSARAELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  +FGAF++F G+RDGLVHISQL++ER
Sbjct: 601 SADAKAIEAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFINFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V KT+D+VKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK I
Sbjct: 661 VTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQKTGKEI 702


>gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3]
          Length = 733

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/700 (63%), Positives = 569/700 (81%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA++ATYGETVVLATVV  ++ K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGY +RE+RP+E+E LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYFKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L EDV+L+A++FG    +PVI AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAHELPEDVMLNAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M +MI++DLR +  I +K  R   ID LK+K+++ F   + E+  +N  +I +VF+
Sbjct: 241 LENNMLKMIEQDLRDTYTITDKQKRHAAIDLLKEKVINNFIPEAEENCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAK+VR  +LD   R+DGR+   VR I ++VGL  RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 NLQAKIVRKNILDTGKRIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+EIM IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALARARSELSEFSPRIEIMNIPVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PEV  IY+G VVK+ +FGAFV+F G+RDGLVHISQL++ER
Sbjct: 601 SSDLKTIEAAKHWILSIVDEPEVGSIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGK 700


>gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 733

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA+LATYGETVVLATVV  ++ K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGYL+RESRP+E+E LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYLKRESRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L EDV+LDA++FG    +PVI AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE++M +M+++DLR    I +K  R   +D LK+++++ F+ E   +  +N  +I +VF+
Sbjct: 241 LEKDMLEMVEQDLRDIYTITDKQKRHAALDFLKEEVINKFTQETEKNCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR+   VR I ++VG+L RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 QLQAKIVRQNILDTGKRIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP++ PVAGIAMGL+K+G  F +L
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGKQFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALARARSELSEFSPRIEMMNIPVDKIRDVIGAGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PEV  IY+G VVK+ +FGAFV+F G+RDGLVHISQL+ ER
Sbjct: 601 SSDLKTIEAAKNWILSIVDEPEVGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLAVER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703


>gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase/polyadenylase [Bartonella tribocorum
           CIP 105476]
 gi|189037300|sp|A9IMR9|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum
           CIP 105476]
          Length = 731

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/700 (62%), Positives = 566/700 (80%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  +S K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE++YAVG+IPGGYL+RESRP+ENE L+SR+IDR IRPLF + YKN+TQVI++V+QH
Sbjct: 61  VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L ED++L A++FGH   +PV++AI KLA++ AK+P     +D S 
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE+ M +M ++D+R +  I +K  R   ID LK ++++ F   + E   ++  +I +VF+
Sbjct: 241 LEKAMQEMAEQDIRKAYTITDKQERYAAIDALKTEIINKFMPETEEDCQFSTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGR+  TVR I ++V +L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRGNILDTKKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+D+L+G  +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDALTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E++ I  D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT+KIA
Sbjct: 541 KALTSARAELSEFSPRIEVINIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  DFGAF++F G+RDGLVHISQL++ER
Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGAIYQGTVVKTADFGAFINFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V KT+D+VKEGD VWVKL+ FD+RGK++LSMK VDQ TGK
Sbjct: 661 VTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKAVDQKTGK 700


>gi|319406539|emb|CBI80181.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. 1-1C]
          Length = 733

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA+LATYGETVVLATVV  +  K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKIPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGYL+RE+RP+E+E LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYLKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L EDV+LDA++FG    +PVI AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE++M +MI++DLR    I +K  R   ID LK+++++ F+ E   +  +N  +I +VF+
Sbjct: 241 LEKDMLKMIEQDLRDVYTITDKQKRHAAIDLLKEEVINKFTQETEKNCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR+   VR I ++VG+L RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 HLQAKIVRQNILDTGKRIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP++ PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGEQFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALARARSELSEFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PEV  IY+G VVK+ +FGAFV+F G+RDGLVHISQL+ ER
Sbjct: 601 SSDLKTIEAAKNWILSIVDEPEVGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLAVER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703


>gi|121602640|ref|YP_989507.1| polynucleotide phosphorylase/polyadenylase [Bartonella
           bacilliformis KC583]
 gi|187470938|sp|A1UU54|PNP_BARBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120614817|gb|ABM45418.1| polyribonucleotide nucleotidyltransferase [Bartonella bacilliformis
           KC583]
          Length = 733

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/702 (63%), Positives = 565/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL +ETGR+ARQ+DGAV+ATYGETVVLATVV  ++ K  QDFFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYAVGKIPGGY +RESRP+ENE LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SM+AASAAL LSG+PF GP+ GA+V Y NG YVLNP LDE  +  LDL V+
Sbjct: 121 DLENNPDILSMIAASAALTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++LSE+V+L AI FG    +PVI+AI +LA++ AKEP     +DFS 
Sbjct: 181 GTENAVLMVESEAHELSEEVMLGAITFGQKGFQPVIDAIIQLAEVAAKEPREFIPEDFSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE+ M +MI++DLR +  I +K  R   ID +K +++S F+ E   +      +I +VF+
Sbjct: 241 LEKTMLKMIEKDLRKAYTITDKQQRYDAIDAIKTEILSKFAPEMEVNCELTADKIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 RLQAKIVRWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVD L+G  +  F++HYNF P + GE  R+ +P RREIGHG+LA RAIHP+LP  
Sbjct: 361 SEDEQYVDLLTGVCKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F+IL
Sbjct: 421 EAFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFVIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E+IM +AL+QAK GR HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+++R +L EF+PR+E+M IP ++IR VIG GGKVIR IVEQTGAK+NI+DDGT+KIA
Sbjct: 541 KALTDARTELSEFSPRIEMMTIPVEKIREVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S     IE A+  I SI D PEV  IY+G VVK  +FGAF++F G+ DGLVHISQL+++R
Sbjct: 601 SPDTKSIETAKSWIHSIVDEPEVGTIYQGTVVKTTEFGAFINFFGSHDGLVHISQLASKR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DVVKEGD VWV+L+ FD+RGKI+LSMKVVDQ TGK I
Sbjct: 661 VAKTTDVVKEGDKVWVQLMGFDERGKIRLSMKVVDQQTGKEI 702


>gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella
           schoenbuchensis R1]
          Length = 733

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/700 (63%), Positives = 561/700 (80%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGAVLATYGET+VLATVV  ++ K  QDFFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYAVGKIPGGY +RESRP+ENE LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGIPFVGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA +L EDV+L A+IFG    +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKLAEVAAKEPRDFIPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFE 296
           LE  M  M+++DL+ +  I +K  R   ID +K ++V  F S   E+  +N  +I +VF+
Sbjct: 241 LETTMLGMVEKDLQKAYTITDKQERHTAIDAIKAEVVDKFMSKIEENCEFNADQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR   TVR I ++VG+L R HGS+LF RG+TQA+V+ TLGT
Sbjct: 301 HLQAKIVRQNILDTGKRIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+GT +  F++HYNF P + GE  R+ +P RREIGHG+LA RAIHP+LP  
Sbjct: 361 SEDEQYIDSLTGTYKETFLLHYNFPPFSVGETGRISSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F IL
Sbjct: 421 DSFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL+QAK GR+HILNEMS
Sbjct: 481 SDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMS 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVEQTGAK+NI+D+G +KIA
Sbjct: 541 KALTSARDELSEFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGAIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PE+  IY+G VVK  +FGAFV+F G+RDGLVHISQL++ER
Sbjct: 601 STDAKAIEAAKRWIHSIVDEPEIGSIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V KT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK
Sbjct: 661 VEKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGK 700


>gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
           str. Toulouse]
 gi|81647260|sp|Q6G0P7|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str.
           Toulouse]
          Length = 733

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/702 (62%), Positives = 568/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  ++ K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVG+IPGGYL+RESRPTE+E LISR+IDR IRPLF+  YKN+TQVI++V+Q+
Sbjct: 61  VNYQEKFYAVGRIPGGYLKRESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y N QY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L ED++L A++FGH   +PV++AI KLA++ AK+P     +D S 
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFIPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE  M +M+++D+R +  I +K  R   ID LK ++++ F SE   +  ++  +I +VF+
Sbjct: 241 LETAMLEMVEQDIRKAYTITDKQERSTAIDVLKTEIINKFMSETEENCKFSADQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR+ +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+ +P+AGIAMGL+K+G+ F IL
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFAIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QA+ GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTNNGITALQMDIKIDGITEEIMKIALEQARDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVEQTGAK+NI+D+GT+KIA
Sbjct: 541 KALTSARDELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  +FGAFV+F G+RDGLVHISQL+TER
Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGGIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTTER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V KT++VVKEGD VWVKL+ FD+RGK++LSMK+VDQ TGK I
Sbjct: 661 VTKTTNVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGKEI 702


>gi|254713431|ref|ZP_05175242.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
           M644/93/1]
 gi|254716212|ref|ZP_05178023.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M13/05/1]
 gi|261217986|ref|ZP_05932267.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261321164|ref|ZP_05960361.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|260923075|gb|EEX89643.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261293854|gb|EEX97350.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
          Length = 714

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRSIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1
           str. 9-941]
 gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           biovar Abortus 2308]
 gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC
           23365]
 gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC
           23445]
 gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19]
 gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
           2308 A]
 gi|254690300|ref|ZP_05153554.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 6
           str. 870]
 gi|254694788|ref|ZP_05156616.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 3
           str. Tulya]
 gi|254705168|ref|ZP_05166996.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 3
           str. 686]
 gi|254707316|ref|ZP_05169144.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           M163/99/10]
 gi|254709144|ref|ZP_05170955.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           B2/94]
 gi|254718207|ref|ZP_05180018.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. 83/13]
 gi|254731329|ref|ZP_05189907.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 4
           str. 292]
 gi|256030669|ref|ZP_05444283.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           M292/94/1]
 gi|256158670|ref|ZP_05456553.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
           M490/95/1]
 gi|256254074|ref|ZP_05459610.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti B1/94]
 gi|256258553|ref|ZP_05464089.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 9
           str. C68]
 gi|256370564|ref|YP_003108075.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
           4915]
 gi|260169573|ref|ZP_05756384.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. F5/99]
 gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
 gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M163/99/10]
 gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           B2/94]
 gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
           686]
 gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
 gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
           07-0026]
 gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
           str. B3196]
 gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
 gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
 gi|75496015|sp|Q57A96|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123727384|sp|Q2YQR3|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037301|sp|A9M9Z8|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037302|sp|B0CK15|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702625|sp|B2S9G0|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH
           domain, type 1 [Brucella melitensis biovar Abortus 2308]
 gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC
           23365]
 gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC
           23445]
 gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19]
 gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
           2308 A]
 gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
           4915]
 gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
 gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           B2/94]
 gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M163/99/10]
 gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
           686]
 gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
 gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
           07-0026]
 gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
           str. B3196]
 gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
 gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
          Length = 714

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium loti
           MAFF303099]
 gi|81778152|sp|Q98BI3|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti
           MAFF303099]
          Length = 715

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/703 (64%), Positives = 561/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K G DFFPLT
Sbjct: 1   MFNQHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQ+++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE Q S LDL V+
Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVI+AI KLA++ AKEP    + D+S 
Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           LE EM +++ ++L  +  I +K  R   +D +K K+ + F+    E   +   +I SVF+
Sbjct: 241 LEGEMLKIVGDELSNAYKITDKQQRYAAVDAVKAKVKAAFAPAEGEEPKYTSEQIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAKVVR  +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 HALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I +I   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ ER
Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIV 703


>gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
 gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
          Length = 714

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           1 str. 16M]
 gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           ATCC 23457]
 gi|256045772|ref|ZP_05448650.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256112492|ref|ZP_05453413.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           3 str. Ether]
 gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           2 str. 63/9]
 gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           3 str. Ether]
 gi|81851039|sp|Q8YEB7|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782709|sp|C0RG51|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC
           23457]
 gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           3 str. Ether]
 gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           2 str. 63/9]
 gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           M28]
 gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
           M5-90]
          Length = 714

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAEEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
           73]
 gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
           73]
          Length = 733

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/703 (62%), Positives = 571/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA++ATYGETVVLATVV  ++ K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGY +RE+RP E+E LISR+IDR IRPLF + YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYFKRENRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L E+V+L+AI+FG    +PVI AI KLA++ AKEP     ++ S 
Sbjct: 181 GTENAVLMVESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKEPRDFIPENLSV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE+ M +M+++DL+ +  I +K  R   ID LK+++++ F   + E+  +N  +I +VF+
Sbjct: 241 LEKNMLKMVEQDLKDAYTITDKQKRHTAIDVLKEEVINKFMQKTEENCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR+   VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 HLQAKIVRQNILDTGKRIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F IL
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFAIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALTSARSELSEFSPRIEMMNITVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PE+  IY+G VVK+ +FGAFV+F G+RDGLVHISQL++ER
Sbjct: 601 SSDLKTIEAAKHWILSIVDEPEIGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703


>gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
 gi|81751805|sp|Q8FXS9|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330]
          Length = 714

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDED+LG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDYLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC
           25840]
 gi|187470942|sp|A5VTB6|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC
           25840]
          Length = 714

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/703 (64%), Positives = 557/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL +ETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E     E    +  ++F 
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATIFT 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|256060129|ref|ZP_05450311.1| polynucleotide phosphorylase/polyadenylase [Brucella neotomae 5K33]
 gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
          Length = 714

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E     E    +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIYPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|254700800|ref|ZP_05162628.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 5
           str. 513]
 gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
           513]
 gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
           513]
          Length = 714

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKE      +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKELRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|260461975|ref|ZP_05810220.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
           opportunistum WSM2075]
 gi|259032222|gb|EEW33488.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
           opportunistum WSM2075]
          Length = 715

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/703 (64%), Positives = 561/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K G DFFPLT
Sbjct: 1   MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQ+++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE Q S LDL V+
Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVI+AI KLA++ AKEP    + D+S 
Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFTAPDYSV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           LE EM +++ ++L  +    +K  R   +D +K K+ + F+    + + +   +I SVF+
Sbjct: 241 LEAEMLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPAEGDEAKYTSEQIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAKVVR  +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT SGIT++QMD+KI GI+E IM +AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTSGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 HALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I +I   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ ER
Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ +GK IV
Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQASGKEIV 703


>gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 715

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/702 (63%), Positives = 560/702 (79%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K G DFFPLT
Sbjct: 1   MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQ+++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE Q S LDL V+
Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVI+AI KLA++ AKEP    + D+S 
Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           LE EM +++ ++L  +    +K  R   +D +K K+ + F+    E + +   +I SVF+
Sbjct: 241 LEAEMLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPAEGEDAKYTSEQIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAKVVR  +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 HALTGARSELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I +I   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANDR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +
Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEL 702


>gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 710

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/702 (62%), Positives = 562/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H VEI+WAGRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K G DFFPLT
Sbjct: 1   MFDTHKVEIDWAGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF++ YKNETQV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V++MVAASAAL LSG+PF GP+ GA+V YING+Y LNP +DE  +  LDL V+
Sbjct: 121 DLENDPDVLAMVAASAALTLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSESQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA++L+ED++L A++FGH   +PVI+AI KLA+  AKEP      D+S 
Sbjct: 181 GTEGAVLMVESEAHELAEDIMLGAVMFGHRGFQPVIDAIIKLAEHAAKEPREHVVADYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE EM Q+++ +LR +  I +K  R   +D +K K+  +F     E + +++ ++ +VF+
Sbjct: 241 LEAEMLQLVEGELRDAYKITDKTQRYTAVDAVKAKVTGHFLPEGVEDTKYSKEQVGTVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD +TVR I ++ G+L R HGS+LF RG+TQA+VV TLGT
Sbjct: 301 SLQAKIVRWNILDTGGRIDGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ+VD+L+GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GEDEQFVDALTGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPAP 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSE+TES+GSSSMATVCG+SLALMDAGVP+ + VAGIAMGL+K+ + F +L
Sbjct: 421 EQFPYTIRAVSEVTESNGSSSMATVCGTSLALMDAGVPLKRSVAGIAMGLIKEDERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGITSLQMDIKIQGITEEIMQIALDQAKGGRLHILQEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + LSESR +LGEF PR+E+M IP D+IR+VIG GGK+IR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 QALSESRAELGEFAPRIEVMQIPTDKIRDVIGAGGKIIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAA++ I SI   PEV ++Y+G VVK ++FGAFV+F G+RDGLVHISQL+ +R
Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGEVYEGTVVKTVEFGAFVNFFGSRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+D+VKEGD VWVKL+ FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGQEI 702


>gi|239833218|ref|ZP_04681547.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
           LMG 3301]
 gi|239825485|gb|EEQ97053.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
           LMG 3301]
          Length = 714

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/702 (64%), Positives = 561/702 (79%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +LSE+++L A++FG    +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTSEAVLMVESEAQELSEEIMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQPEDLSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE +M  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKMLAVVENDLRDAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSPEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD +TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGSRIDGRDLKTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKQPFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K LS SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KALSTSREELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+++R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLASDR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK I
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEI 702


>gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris CGA009]
 gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris CGA009]
          Length = 722

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/699 (62%), Positives = 556/699 (79%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG+PF+GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI  LA+  AKEP  +   D S+
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVDDSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  IP K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I AQVG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSLSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699


>gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris TIE-1]
 gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris TIE-1]
          Length = 722

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/699 (62%), Positives = 555/699 (79%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV  +S ++G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG+PF+GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI  LA+  AKEP  +   D S+
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVDDSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  IP K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I AQVG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSLSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PE+ +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEIGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699


>gi|114705224|ref|ZP_01438132.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
           HTCC2506]
 gi|114540009|gb|EAU43129.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
           HTCC2506]
          Length = 711

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/702 (63%), Positives = 565/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEI+WAGR L LETG+IARQ+DGAVLATYGETVV+ATVV ++  K G DFFPLT
Sbjct: 1   MFNSHKVEIDWAGRRLTLETGKIARQADGAVLATYGETVVMATVVSEKQPKAGFDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L SR+IDR IRPLF++ YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAEGYKNDTQVVLTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P VV+MVAASAAL LSG+PF GP+ GA+V YING+Y +NP +DE  + +LDL V+
Sbjct: 121 DLENDPDVVAMVAASAALTLSGVPFMGPIGGARVGYINGEYKVNPNVDEMPESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EA++LSEDV+L A++ GH   +PVI+AI KLA++ AKEP   ++ D S 
Sbjct: 181 GTKDAVLMVESEAHELSEDVMLGAVMEGHRSFQPVIDAIIKLAEVAAKEPREHNAPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE EM ++ ++DLR +  I +K  R   +   K+K+V++F  E      + + E+ +VF+
Sbjct: 241 LEGEMLKLAEDDLRAAYKITDKQERTNAVATAKEKVVAHFLPEGEDEPKFTKEEVNAVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD + R+DGR  +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 SLQAKIVRWNILDTQSRIDGRSLDTVRKIVSEVGILPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ+VD+L+GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQFVDALTGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR VSEITES+GSSSMATVCG+SLA MDAGVP+ +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTLRAVSEITESNGSSSMATVCGTSLAFMDAGVPLKRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIQGITEEIMKVALDQAKGGRVHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L E+R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NIDDDG +KIA
Sbjct: 541 KALGEARSELGEFAPRIEVMQIPTDKIRDVIGSGGKVIREIVEKTGAKINIDDDGVIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAA++ I SI   PEV ++Y+G VVK ++FGAFV+F G+RDGLVHISQL   R
Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGEVYEGTVVKTVEFGAFVNFFGSRDGLVHISQLGEGR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ++G+ I
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQDSGEEI 702


>gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB18]
 gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB18]
          Length = 715

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/699 (62%), Positives = 550/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S K+G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+ V+ H
Sbjct: 61  VDYIEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P ++++VA+SAAL LSG PF+GP+  A+V +IN +YVLNP LDE     LDL V+
Sbjct: 121 DMENDPDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEMVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PV++AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPREVAVVDESV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+E+  +I+ +LR +  IP K  R   +   K+K+++++  E     +++  I  VF++
Sbjct: 241 LEKEILGLIEPELRAAYAIPVKQDRYAAVGKAKEKVMAHYFPEGQEPQYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I AQVG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSLSGT +  F++HYNF P + GE  RMG   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDSLSGTYKETFLLHYNFPPYSVGETGRMGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   I  D+IR VIG GGKVIR IVE+TGAKVNIDDDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIDDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PE+N IY G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGE 699


>gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
 gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
          Length = 722

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/699 (61%), Positives = 551/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG PF GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI +LA+  AKEP  +   D + 
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRELIEIDNAA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +I+++LR +  IP K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLIEQELRAAYAIPVKQERYAAVGKVKEKALAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR I AQ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KIGGI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIGGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQATGE 699


>gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
 gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
          Length = 723

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/701 (61%), Positives = 555/701 (79%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+A+YGETVVLATVV  ++ ++G DF PLT
Sbjct: 6   MFHKHSVEIDWGGRPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGVDFLPLT 65

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 66  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 125

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D+E+ P V++MVAASAAL LSG+PF+GP+  A+V ++N +YVLNP LDE   + L+L V+
Sbjct: 126 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFMNDEYVLNPTLDEMVDTRLELVVA 185

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSED++L A++FGH   +PVI AI +LA+  AKEP  + + D S 
Sbjct: 186 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVAAIDNSA 245

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFED 297
           LE+EM  +I++DLR +  IP K  R   +   K+K+++++  E +   +++  +  VF++
Sbjct: 246 LEKEMLALIEQDLRAAYAIPVKQDRYAAVGKAKEKVLAHYFPEGAEPKYDKLRVAEVFKE 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 306 LEAKIVRWNILDTGKRIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSLSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 366 EDEQYIDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 426 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLS 485

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 486 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAK 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 546 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 605

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++AA + I+SI   PEV ++Y+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 606 NDGEAMKAAIKWIKSIASDPEVGQVYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAVGRV 665

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ I
Sbjct: 666 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDI 706


>gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisA53]
 gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisA53]
          Length = 721

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/699 (62%), Positives = 547/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFHKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+ V+ H
Sbjct: 61  VDYIEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P ++++VA SAAL LSG PF+GP+  A+V +IN +YVLNP LDE  +  LDL V+
Sbjct: 121 DMENDPDILALVATSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMIETQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PV++AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPRDVKVIDESV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+E+  +I++DLR +  IP K  R   +   K K+++++  E     +++  I  VF++
Sbjct: 241 LEKEILGLIEQDLRAAYAIPVKQDRYAAVGKAKDKVMAHYFPEGQEPQYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSLSGT +  F++HYNF P + GE  RMG   RREIGHG+LA RA+HPVLP   
Sbjct: 361 EDEQYIDSLSGTYKEQFLLHYNFPPFSVGETGRMGGTKRREIGHGKLAWRALHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTDHGITSLQMDIKIAGITEEIMKVALGQAKEGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNIDDDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIDDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PE+N IY G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGE 699


>gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris HaA2]
 gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris HaA2]
          Length = 718

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/699 (61%), Positives = 551/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGET+VLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +++MVAASAAL LSG PF+GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRELVVIDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  IP K  R   +  +K+K +++F    E   +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQERYAAVGKVKEKAIAHFFPEGEEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR I A+ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL++ RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLASGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSM+VVDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMRVVDQETGE 699


>gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium
           japonicum USDA 110]
 gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
           USDA 110]
          Length = 720

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/699 (61%), Positives = 551/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI  V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +V++VA+SAAL LSG PF+GP+  A+V ++N +YVLNP LDE     LDL V+
Sbjct: 121 DMENDPDIVALVASSAALTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PVI AI +LA+  AKEP  +   D + 
Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVIDNAA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+EM  +++++LR +  IP K  R   +  +K+K+++++  E     +++  I  VF++
Sbjct: 241 LEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +   F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    ++AA + I+SI   PEV +IY G VVKVM+FGAFV+F G++DGLVHISQL++ RV
Sbjct: 601 SDGEAMKAAIKWIKSIASEPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQLASARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699


>gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
 gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
          Length = 714

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/699 (60%), Positives = 550/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VE++W GRPLKLETG++ARQ+DGAV+ATYGETVV+ATVV  ++ K+G DF PLT
Sbjct: 1   MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A G+IPGGY +RE RP+E E L+SR+IDR IRPLF K Y+ +TQVI+  + H
Sbjct: 61  VNYQEKTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+MVAASAAL LSG+PF GP+  A+V ++N +++LNP LDE     LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+V+L A++FGH   +PVI+AI  LA+  AKEP  I++ D S+
Sbjct: 181 GTADAVLMVESEAKELPEEVMLGAVMFGHRHFQPVIKAIIDLAEKAAKEPREIETIDNSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E++M  + + +LR +  IP K  R   +  +KKK++ +F  E     +++  I  VF++
Sbjct: 241 IEKDMRAVGEAELRKAYAIPVKQDRYAAVGAVKKKVMDHFFPEGQEPKFDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR  +LD  +R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEADVVRNNILDTGLRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKDGRIHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E++ IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++   I AA + I+SIT  PEV +IY G VVKVM+FGAFV+F G +DGLVHISQL+  RV
Sbjct: 601 ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAANRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL  DDRGK++LSMK V+Q TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVNQETGE 699


>gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
 gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
          Length = 709

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/697 (61%), Positives = 540/697 (77%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ HTVEIEW GRPL LE G++ARQ+DG+V+ TYGET V+  VV ++  K   DFFPLT
Sbjct: 3   MFEKHTVEIEWGGRPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+ YA GKIPGG+ +RE+RP+ENE L+ R+IDR IRPLF++ YKN+TQV   V+ H
Sbjct: 63  VNYIEKAYAAGKIPGGFFKREARPSENETLVCRLIDRPIRPLFAEGYKNDTQVTCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E++P +V+M+A SAAL +SG+PF GP+ GA+V  I+G YVLNP +DE  +  LDL V+
Sbjct: 123 DMENNPDIVAMIATSAALTISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPESDLDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EAN LSE+V+L A++FGH E +PVI+A+ +LA+ CAKEP      D SK
Sbjct: 183 GTTDAVLMVESEANVLSEEVMLGAVMFGHEEFQPVIDAVIQLAEKCAKEPRPHTVPDNSK 242

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDI 298
           LE E+++++ + +  +  I +K  R   ID+ K      F SE S+  E      VF+ +
Sbjct: 243 LEGEVTKLVGKAIEKAYTIADKQDRYAAIDEAKATAKDKFLSEESTDEEKTTFGGVFKQV 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           QA VVR  ++  K R+DGRD +TVR I +QVG+L RTHGS+LF RG+TQAIVV TLGT +
Sbjct: 303 QANVVRGSIIKTKKRIDGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLGTGD 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ++D+L+GT + +F++HYNF P + GE  R+G  SRREIGHG+LA RA+  VLP    
Sbjct: 363 DEQFIDALTGTYKENFLLHYNFPPYSVGETGRIGFTSRREIGHGKLAWRAVKAVLPSKED 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYTLR VSEITES+GSSSMATVCG+SLA MDAGVP+  PVAGIAMGL+K+GDDF +LSD
Sbjct: 423 FPYTLRAVSEITESNGSSSMATVCGTSLAFMDAGVPLKAPVAGIAMGLIKEGDDFAVLSD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E+IM +AL+QAK GR  ILNEMSK 
Sbjct: 483 ILGDEDHLGDMDFKVAGTAEGITSLQMDIKITGITEDIMKIALEQAKGGRETILNEMSKA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+E R +LGEF PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+ASS
Sbjct: 543 LTEGRSELGEFAPRIESFKIPTDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVASS 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+AA + IRSITD PEV +IY+G VVK +DFGAFV+F GA+DGLVHISQL+ ERV 
Sbjct: 603 DGKAIDAALKWIRSITDDPEVGEIYQGTVVKTVDFGAFVNFFGAKDGLVHISQLADERVG 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           KT+DVV EGD VWVKL+ FDDRGK++LSMKVVDQ TG
Sbjct: 663 KTTDVVNEGDKVWVKLMGFDDRGKVRLSMKVVDQETG 699


>gi|187471094|sp|A8IGA3|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 724

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/701 (61%), Positives = 541/701 (77%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETG++ARQ+DGAV A+YG+T VLATVV  R  K GQDFFPLT
Sbjct: 1   MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQV++ V+ H
Sbjct: 61  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GP+ GA+V ++  +YVLNP ++E + S LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FGH   +PVIEAI +LA+  AKEP   +  D S 
Sbjct: 181 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EIVSVF 295
           LE ++ ++ + DLR +  I +K  R + +   K K+  YF        E     ++  V 
Sbjct: 241 LEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQDVAEVL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++AK+VR  +LD  +R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 301 KGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP 
Sbjct: 361 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR+VSEI ES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+ +G+ F +
Sbjct: 421 KHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+E IM +AL QAK GR HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK L+ +R +LGE  PR+E+M I  D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI
Sbjct: 541 SKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV  IY G VVKV+DFGAFV+F G++DGLVHISQLS E
Sbjct: 601 ASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLSKE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RVAK+SDVVKEGD V VKL+ FD+RGK +LSMK VDQ TG+
Sbjct: 661 RVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAVDQTTGE 701


>gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB5]
 gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB5]
          Length = 722

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/699 (60%), Positives = 549/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPL+LETG++ARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P ++++VA+SAAL LSG PF+GP+  A+V +IN +YVLNP LDE  +  LDL V+
Sbjct: 121 DMENDPDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI  LA+  AKEP  +   D S 
Sbjct: 181 GTSDAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIALAEKAAKEPRELTVIDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  I  K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIAVKQERYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR I A+ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ+TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQDTGE 699


>gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium
           caulinodans ORS 571]
 gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans
           ORS 571]
          Length = 756

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/701 (61%), Positives = 541/701 (77%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETG++ARQ+DGAV A+YG+T VLATVV  R  K GQDFFPLT
Sbjct: 33  MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 92

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQV++ V+ H
Sbjct: 93  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 152

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GP+ GA+V ++  +YVLNP ++E + S LDL V+
Sbjct: 153 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 212

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FGH   +PVIEAI +LA+  AKEP   +  D S 
Sbjct: 213 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA 272

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EIVSVF 295
           LE ++ ++ + DLR +  I +K  R + +   K K+  YF        E     ++  V 
Sbjct: 273 LEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQDVAEVL 332

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++AK+VR  +LD  +R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 333 KGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 392

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP 
Sbjct: 393 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 452

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR+VSEI ES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+ +G+ F +
Sbjct: 453 KHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV 512

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+E IM +AL QAK GR HIL EM
Sbjct: 513 LSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 572

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK L+ +R +LGE  PR+E+M I  D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI
Sbjct: 573 SKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 632

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV  IY G VVKV+DFGAFV+F G++DGLVHISQLS E
Sbjct: 633 ASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLSKE 692

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RVAK+SDVVKEGD V VKL+ FD+RGK +LSMK VDQ TG+
Sbjct: 693 RVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAVDQTTGE 733


>gi|307942752|ref|ZP_07658097.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
 gi|307773548|gb|EFO32764.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
          Length = 710

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/698 (61%), Positives = 546/698 (78%), Gaps = 3/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE++W GRPL LETG+IARQ+DGAV+ATYGET V+ATVV  +S K GQDFFPLT
Sbjct: 1   MFDIHRVEVDWGGRPLVLETGKIARQADGAVMATYGETKVMATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+  YKN+TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVILTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E++P +++MVAASAAL LSG+PF GP+ GA+V YING+YVLNP +D+ ++ SLDL V+
Sbjct: 121 DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPAVDDMEESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L ED +L A++FG    +PVI+AI KLA+  AKEP  +   D S+
Sbjct: 181 GTSEAVLMVESEAKELDEDTMLGAVVFGQKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVS-VFED 297
           L   +  + ++DL+ +  I  K  R   ID  K K+V +   +   +  E  +V  +F+ 
Sbjct: 241 LFGTIKGIAEDDLKAAYKITSKTERKNAIDAAKAKVVEAVIENGGDAAPEATVVGELFKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +LD   R+DGRD  TVR IS++VG+L R HGS+LF RG+TQ +VV TLGT 
Sbjct: 301 LEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VD L GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP   
Sbjct: 361 EDEQFVDLLQGTMKEHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMLPAHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAGIAMGL+K+GD F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGSENGITSLQMDIKIDGITEEIMKVALAQAKDGRIHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E+R +LGE  PR+E++ IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 AITEARSELGEHAPRIEMLKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GARDGLVHISQL+ ++V
Sbjct: 601 SDGKAIKAAVNWINSIAAEPEVGVIYEGTVVKCVDFGAFVNFFGARDGLVHISQLAPKKV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           AK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TG
Sbjct: 661 AKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETG 698


>gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [polymorphum gilvum
           SL003B-26A1]
 gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
           SL003B-26A1]
          Length = 708

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/701 (61%), Positives = 545/701 (77%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE+EW GRPL LETG++ARQ+DGAV+ATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFDIHRVEVEWGGRPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF++ YKN+TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E++P ++++VA+SAAL LSG+PF GPV GA+V YING+YVLNP +D+  + SLDL V+
Sbjct: 121 DMENAPDILALVASSAALTLSGVPFMGPVGGARVGYINGEYVLNPLIDDMPESSLDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L EDV+L A++FGH+  + VI+AI KLA+  AKEP  ++  D S 
Sbjct: 181 GTGDAVLMVESEAKELPEDVMLGAVMFGHSGFQTVIDAIIKLAETAAKEPRGLNLPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFED 297
           L   +  +  EDL+ +  I  K  R   +D  K K+V    +          V   +F+ 
Sbjct: 241 LFARIKDIAAEDLKAAYTITGKTERRNAVDAAKTKVVEAVITNAGDAAPAATVVGDLFKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +++   R+DGRD +TVR I ++VG+L R HGS+LF RG+TQ +VV TLGT 
Sbjct: 301 LEAEIVRGAIIETGHRIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VD+L GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P+LP   
Sbjct: 361 EDEQFVDALEGTYKAHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLPAKH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAGIAMGL+K+GD F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL+QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGITSLQMDIKIQGITEEIMKVALEQAREGRVHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E+R +LGE  PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVKIAS
Sbjct: 541 AITEARPELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I+AA   I SI   PEV  IY+G VVK ++FGAFV+F GA+DGLVHISQL+  +V
Sbjct: 601 ADGKAIKAAINWINSIAAEPEVGMIYEGTVVKCVEFGAFVNFFGAKDGLVHISQLAPRKV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ+TGK I
Sbjct: 661 AKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQDTGKEI 701


>gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
           winogradskyi Nb-255]
 gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 718

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/699 (60%), Positives = 550/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S ++G DF PLT
Sbjct: 1   MFNQHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR +RPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +++MVAASAAL LSG PF+GP+  A+V +IN +YVLNP LDE     LDL V+
Sbjct: 121 DMENDPDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEIVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI +LA+  AKEP  +   D ++
Sbjct: 181 GTADAVLMVESEAKELSEEIMLKAVMFGHRHFQPVIDAIIELAEKAAKEPRELKVIDDTE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  ++++DLR +  IP K  R   +  +K+K +++F  E     +++  +  VF++
Sbjct: 241 IEKEMLGLVEQDLRAAYAIPVKQDRYAAVGKVKEKALAHFFPEGQEPKYDKLRVAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR+I A+ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQYIDSLAGTYKETFLLHYNFPPYSVGETGRLGGAKRREIGHGKLAWRAIRPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G+ + +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEG  V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTSDVVKEGAKVKVKLLGFDDRGKTRLSMKVVDQETGE 699


>gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
           12614]
 gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
           12614]
          Length = 709

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/699 (61%), Positives = 543/699 (77%), Gaps = 10/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE+EW GRPL LETG++ARQ+DGAV+A+YGET VLATVV  +S K GQDFFPLT
Sbjct: 1   MFDIHRVEVEWGGRPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+  YKN+TQV+I V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P +++MVA+SAAL LSG+PF GP+ GA+V YING+YVLNP +D+  + +LDL V+
Sbjct: 121 DLENAPDILAMVASSAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L ED++L A++FGH   +PVI+AI KLA+  AKEP  +   D S+
Sbjct: 181 GTNDAVLMVESEAKELDEDIMLGAVMFGHKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV----- 294
           L  ++  M + DL  +  I  K  R   ID  K K+V    +  +   EGE V       
Sbjct: 241 LFGKVKAMAESDLVAAYKITSKTDRKNAIDAAKAKVVEALITNAA---EGEAVESTILGE 297

Query: 295 -FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ ++A++VR  +LD   R+DGRD  TVR IS++VG+L R HGS+LF RG+TQ +VV T
Sbjct: 298 QFKKLEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVAT 357

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQY+D L GT ++ FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P++
Sbjct: 358 LGTGEDEQYIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMM 417

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+KDGD F
Sbjct: 418 PPHHEFPYTVRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGDRF 477

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QAK GR+HIL 
Sbjct: 478 AVLSDILGDEDHLGDMDFKVAGTQDGITSLQMDIKIDGITEEIMKVALGQAKDGRIHILG 537

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EMSK ++E+R +LGE  PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTV
Sbjct: 538 EMSKAITEARAELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTV 597

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KIAS+    I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GA+DGLVHISQL+
Sbjct: 598 KIASADGKAIKAAVNWINSIAAEPEVGMIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ++VAK +DV+KEGD VWVKL+ FD+RGK++LSMKVVDQ
Sbjct: 658 PKKVAKVTDVIKEGDKVWVKLMGFDERGKVRLSMKVVDQ 696


>gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           BTAi1]
 gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
           BTAi1]
          Length = 720

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/699 (60%), Positives = 543/699 (77%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S ++G DF PLT
Sbjct: 1   MFTKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+  + H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +++MVAASAAL LSG+PF+GP+  A+V + N +Y+LNP LDE     LDL V+
Sbjct: 121 DMENDPDILAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PVI AI +LA+  AKEP  +   D S 
Sbjct: 181 GTSDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRDVAIIDNSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  + ++DLR +  IP K  R   +  +K+K+++YF  E     + +  +  VF++
Sbjct: 241 IEKEMLGIAEQDLRKAYAIPVKQERYAAVAAVKEKVMAYFFPEGQEPKYEKLRVADVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR+I  +VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGRRIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT R+VSE+TES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 421 EFPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    ++AA + I+SI   PE+ +IY G VVKVM+FGAFV+F G RDGLVHISQL+ +RV
Sbjct: 601 SDGEAMKAAIKWIKSIASDPEIGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQLADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KT+DVVKEGD V VKLL FDDRGK +LSMK VDQ TG+
Sbjct: 661 QKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKAVDQTTGE 699


>gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
 gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
          Length = 718

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/701 (61%), Positives = 545/701 (77%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETGR+ARQ+DGAVLATYG+T VLAT V  ++ K GQDFFPLT
Sbjct: 1   MFDIHREELDWGGRTLVLETGRMARQADGAVLATYGDTTVLATAVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF++ YKN+TQV++ V+ H
Sbjct: 61  VNYQEKAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P VVSMVAASAAL LSG+PF GP+ GA+V +I+ +YVLNP LDE  + +LDL V+
Sbjct: 121 DLENDPDVVSMVAASAALTLSGVPFMGPIGGARVGFIDNEYVLNPTLDEVKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+E+V+L A++FGH   +PVI+AI +LA+  AKEP    + D S 
Sbjct: 181 GTADAVLMVESEAKELAEEVMLGAVMFGHRHFQPVIDAIIRLAEKAAKEPREFAAPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEK---YVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VF 295
           LE E+  +I+ DLR +  I  K   Y          K   +  ++E  +  E + +S V 
Sbjct: 241 LETELRGLIEADLRAAYKIARKQDRYAAVDAAKAKAKAHYAALAAEGQAVPEAQTLSEVL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ++++AK+VR  +LD  VR+DGRD++TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 301 KELEAKIVRWTILDDGVRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP 
Sbjct: 361 TGEDEQFIDSLEGTYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPILPP 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR VSEI ES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+ +G+ F +
Sbjct: 421 AHEFPYTLRAVSEILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QAK GR HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTDKGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K L+ +R +LGE  PR+E++ IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+
Sbjct: 541 AKALTGARAELGEHAPRIEVIQIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKV 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV +IY+G VVKV+DFGAFV+F GA+DGLVH+SQL+ E
Sbjct: 601 ASASGESIKAALNWIKSIASEPEVGQIYEGTVVKVVDFGAFVNFFGAKDGLVHVSQLAKE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RVAK SDVVKEGD V VKLL FD+RGK +LSMKVVDQ TG+
Sbjct: 661 RVAKPSDVVKEGDKVKVKLLGFDERGKTRLSMKVVDQATGE 701


>gi|209883656|ref|YP_002287513.1| polyribonucleotide nucleotidyltransferase [Oligotropha
           carboxidovorans OM5]
 gi|226702670|sp|B6JCR8|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha
           carboxidovorans OM5]
          Length = 714

 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/699 (60%), Positives = 548/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VE++W GRPLKLETG++ARQ+DGAV+ATYGETVV+ATVV  ++ K+G DF PLT
Sbjct: 1   MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+  Y+ +TQVI+  + H
Sbjct: 61  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +V+MVAASAAL LSG+PF GPV  A+V ++N +++LNP LDE     LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA +L E+++L A++FGH   +PV++AI +LA+  AKEP  + +   + 
Sbjct: 181 GTATAVLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKEPRDVVATVNAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+E+  ++++DLR +  IP K  R   +   K K++ +F  E     + +  ++ VF+D
Sbjct: 241 LEKEILGIVEQDLRKAYSIPVKQDRYAAVGAAKDKVLEHFFPEGIEPRYEKLRVLDVFKD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGRRIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSL+GT +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDSLAGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +GD F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTEKGVTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E++ IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++   I AA + I+SIT  PEV +IY G VVKVM+FGAFV+F G +DGLVHISQL+  RV
Sbjct: 601 ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAASRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KTSDVVKEGD V VKLL  DDRGK++LSMK VDQ TG+
Sbjct: 661 QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGE 699


>gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
 gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
          Length = 712

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/700 (60%), Positives = 547/700 (78%), Gaps = 2/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE++W GRPL LETG++ARQ+DGAV+ATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFDIHRVEVDWGGRPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGG+ +RE RP+E+E L SR+IDR IRPLF   YKNETQV++ V+ H
Sbjct: 61  VNYQEKAYAAGRIPGGFFKREGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VV+MV ASAAL +SG+PF GP+ GA+V YING+YVLNP +D+ ++ +LDL V+
Sbjct: 121 DLENAPDVVAMVGASAALTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETNLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FGH   +PVI+AI +LA+  AKEP  ++  D S 
Sbjct: 181 GTNDAVLMVESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKAAKEPRELNLPDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDI 298
           L  ++ ++  E+L  +  I  K  R   +D +K K+V    +      E  ++S +F+  
Sbjct: 241 LFGKVQELANEELGAAYSITAKTERKNAVDAVKAKVVEALVTGEEGAPEANVISDLFKKA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A +VR  +LD   R+DGRD  TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT E
Sbjct: 301 EAAIVRGRILDTGSRIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGE 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ++D L GT++  FM+HYNF P + GE  RMG+P RREIGHG+LA RA++P+LP    
Sbjct: 361 DEQFIDLLEGTKKATFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPMLPAHHD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGL+K+G+ F +LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKEGERFAVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QAK GR+HIL EM+K 
Sbjct: 481 ILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E+R +LGE  PR+E++ IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+ASS
Sbjct: 541 ITEARSELGEHAPRIEVIKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVASS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GARDGLVHISQL+  +VA
Sbjct: 601 DGKAIKAALNWINSIAAEPEVGVIYEGTVVKTVDFGAFVNFFGARDGLVHISQLAPRKVA 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K +DV+KEGD V+VKL+ FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 KVTDVIKEGDKVFVKLMGFDERGKVRLSMKVVDQETGQEI 700


>gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
 gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
          Length = 714

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/699 (60%), Positives = 545/699 (77%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H  E++WAGR L LETGRIARQ+DGAVLATYGET VLATVV  R+ K G DFFPLT
Sbjct: 1   MFEIHREELDWAGRKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF + Y+N+TQV++ V+ H
Sbjct: 61  VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++++VA SAAL +SG+PF GPV GA+V YING   LNP +DE  + +LDL V+
Sbjct: 121 DLENDPDILALVATSAALTISGIPFMGPVGGARVGYINGALKLNPTVDELKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE ++L+A++ GH   +PVI+AI +LA+  AKEP  +   D ++
Sbjct: 181 GTGDAVLMVESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKAAKEPRELAVADKAE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           +E  +  + + +LR +  I  K  R K +D +K K+      E +   +++ ++   F D
Sbjct: 241 VEAAVRDIAEGELREAYKITAKQERYKAVDAVKAKVALALFPEDAEPRFSKEKVAEAFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  VR+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LQAKVVRWNILDLGVRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VDSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  A
Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+RIVSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+K+ GI+E IM +AL QAK GRLHIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEEGVTSLQMDIKVAGITEEIMKVALDQAKGGRLHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGEF PR+E + IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTGARAELGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI + PEV +IY+G VVKV+DFGAFV+F G++DGLVHISQL+  RV
Sbjct: 601 SDGNSIKAAIAWIKSIANDPEVGQIYEGTVVKVVDFGAFVNFFGSKDGLVHISQLAKGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AK+SDVVKEG+ V VKLL FDDRGK++LSM+ VDQ TG+
Sbjct: 661 AKSSDVVKEGEKVKVKLLGFDDRGKVRLSMRYVDQETGE 699


>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 715

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/699 (61%), Positives = 542/699 (77%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H  EIEWAGR L LETG+IARQ+DGA+ ATYGET VLATVV  +S+K G DFFPLT
Sbjct: 3   MFEIHREEIEWAGRKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF + Y+NETQVI+ V+ H
Sbjct: 63  VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++SMVA+SAAL LSG+PF GPV  A+V Y+NGQY +NP LDE    +LDL V+
Sbjct: 123 DLENDPDILSMVASSAALTLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSEDV+L A++ GH+  +PVI+AI +LA+  AKEP  +   D ++
Sbjct: 183 GTSDAVLMVESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKEPRDLILPDKTE 242

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + DLR +  I  K  R   +D +K K+      +   + + +  +  VF D
Sbjct: 243 VEVAVLAIAENDLREAYKITSKQDRYAAVDAVKAKVFGDLLPAEGEAKFPKDLVAEVFHD 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  +R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 303 LQAKVVRWNILDNGIRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTG 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ +D+L GT R  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  A
Sbjct: 363 EDEQLIDNLEGTYRERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMLPTPA 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G+ + +LS
Sbjct: 423 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAVLS 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+K
Sbjct: 483 DILGDEDHLGDMDFKVAGTEEGITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEMAK 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R +LGEF PR+E + IP ++IR VIG GGKVIR I E+TGAK+NI+DDGTVK+AS
Sbjct: 543 AITGARAELGEFAPRIETLRIPTEKIREVIGTGGKVIREICEKTGAKINIEDDGTVKVAS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI   PEV  IY G VVKV+DFGAFV+F G++DGLVHISQL+  RV
Sbjct: 603 SDGNSIKAAINWIKSIATDPEVGHIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLAKGRV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AKTSDVVKEGD V VKLL FDDRGK++LSM++VDQ TG+
Sbjct: 663 AKTSDVVKEGDKVKVKLLGFDDRGKVRLSMRLVDQETGE 701


>gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
 gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
          Length = 717

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/699 (61%), Positives = 546/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF VH  E++WAGR L LETG++ARQ+DGAV+A++GET VLATVV  ++ K GQDFFPLT
Sbjct: 1   MFQVHREELDWAGRKLVLETGKVARQADGAVMASWGETTVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF   Y+ +TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P +++MVAASAAL LSG+PF GPV GA+V YINGQ  LNP ++E + S LDL V+
Sbjct: 121 DLENDPDILAMVAASAALTLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+ +L+A++ GH   +PVI+AI +LA+  AK+P  +   D + 
Sbjct: 181 GTSDAVLMVESEAKELSEETMLEAVMTGHRGFQPVIDAIIRLAERAAKDPRDLIVPDLAH 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFED 297
           + E ++++ + DLR +     K  R   +D +K K+++    E S  ++ + ++  VF++
Sbjct: 241 VAEAVARIAEADLREAYKHTVKQERYAAVDAVKAKVMTELFPEGSEPAFTKEQVGEVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  +R+DGRD +TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LQAKVVRWNILDTGIRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VDSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  A
Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+  P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+T++QMD+KI GI+E IM +AL QAK GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTSLQMDIKIAGITEEIMKVALAQAKDGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ SR +LGEF PR+E + IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTTSRAELGEFAPRIETLKIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI   PEV  IY+G VVK  DFGAFV+F GA+DGLVHISQLS +RV
Sbjct: 601 SDGNSIKAAINWIKSIASDPEVGMIYEGTVVKTADFGAFVNFFGAKDGLVHISQLSKQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AKT+DVVKEGD V VKLL FDDRGK++LSM+ VDQ TG+
Sbjct: 661 AKTTDVVKEGDRVKVKLLGFDDRGKVRLSMRAVDQETGE 699


>gi|254503471|ref|ZP_05115622.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
 gi|222439542|gb|EEE46221.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
          Length = 711

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/705 (60%), Positives = 547/705 (77%), Gaps = 10/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE++W GRPL LETG++ARQ+DG+V+ATYGET VLATVV  ++ + GQDFFPLT
Sbjct: 2   MFDIHRVEVDWGGRPLILETGKVARQADGSVMATYGETKVLATVVSAKAPRAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+  YKN+TQV+I V+ H
Sbjct: 62  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E++P +++MVAASAAL LSG+PF GP+ GA+V YING+YVLNP +D+  + +LDL V+
Sbjct: 122 DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESALDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+ +L A++FGH   + VI+AI KLA+  AKEP    + D S+
Sbjct: 182 GTSDAVLMVESEAKELDEETMLGAVMFGHKGFQTVIDAIIKLAEAGAKEPREFTAADHSE 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV----- 294
           L  ++  +  +DL  +  I  K  R   +D  K K+V    +  +   EGE V       
Sbjct: 242 LLGKVKAIAADDLAAAYKITAKTERKNAVDAAKAKVVEALITNAA---EGETVEANVLGE 298

Query: 295 -FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ ++A++VR  +LD   R+DGRD  TVR IS++VG+L R HGSSLF RG+TQ +VV T
Sbjct: 299 QFKKLEAEIVRGGILDTGTRIDGRDLSTVRQISSEVGILSRAHGSSLFTRGETQGLVVAT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQ++D L GT ++ FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P+L
Sbjct: 359 LGTGEDEQFIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPML 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYTLR+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+K+G+ F
Sbjct: 419 PAHHEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKEGERF 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QAK GR+HIL 
Sbjct: 479 AVLSDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRIHILG 538

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+  ++E+R +LGE  PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTV
Sbjct: 539 EMANAITEARSELGEHAPRIEMMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTV 598

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KIASS    I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GA+DGLVHISQL+
Sbjct: 599 KIASSDGKAIKAAVNWINSIAAEPEVGVIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            ++VAK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TG+ I
Sbjct: 659 PKKVAKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGQEI 703


>gi|187610327|sp|Q1QS60|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 720

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/699 (59%), Positives = 549/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RP+E E L+SR+IDR +RPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG PF GP+  A+V ++N +YVLNP LDE     L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSED++L A++FGH   +PVI AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVSQADDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+EM  +I+ +LR +  I +K  R   +   K K+++++  E     +++  I +VF+ 
Sbjct: 241 LEKEMLGLIEGELRPAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD++TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G+  RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GI+++QMD+KI GI+E IM +AL QA+ GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 NDGEAMKAAIKWIKSIASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K+SD+VKEGD V VKLL FDDRGK +LSMK VDQ TG+
Sbjct: 661 QKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKAVDQQTGE 699


>gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
           hamburgensis X14]
 gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 748

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/699 (59%), Positives = 549/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 29  MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 88

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RP+E E L+SR+IDR +RPLF+  ++NETQVI+ V+ H
Sbjct: 89  VDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 148

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG PF GP+  A+V ++N +YVLNP LDE     L+L V+
Sbjct: 149 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVA 208

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSED++L A++FGH   +PVI AI +LA+  AKEP  +   D S 
Sbjct: 209 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVSQADDSA 268

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+EM  +I+ +LR +  I +K  R   +   K K+++++  E     +++  I +VF+ 
Sbjct: 269 LEKEMLGLIEGELRPAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFKH 328

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD++TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 329 LEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 388

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G+  RREIGHG+LA RAIHPVLP   
Sbjct: 389 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHH 448

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 449 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLS 508

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GI+++QMD+KI GI+E IM +AL QA+ GR+HIL EM+K
Sbjct: 509 DILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAK 568

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 569 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 628

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 629 NDGEAMKAAIKWIKSIASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRV 688

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K+SD+VKEGD V VKLL FDDRGK +LSMK VDQ TG+
Sbjct: 689 QKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKAVDQQTGE 727


>gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
 gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
          Length = 714

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/699 (60%), Positives = 540/699 (77%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +H  E++WAGR L LETG+IARQ+DGAV A++GET VLATVV  ++ K GQDFFPLT
Sbjct: 1   MFQIHREELDWAGRKLVLETGKIARQADGAVFASWGETTVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF   Y+N+TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P +++MVAASAAL LSG+PF GPV  A+V YINGQ  LNP ++E + S LDL V+
Sbjct: 121 DLENDPDILAMVAASAALTLSGIPFMGPVGAARVGYINGQLKLNPTIEEMKLSVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSEDV+L A++ GH   +PVI+AI +LA+  AK+P  ++  D S+
Sbjct: 181 GTSDAVLMVESEAQELSEDVMLGAVMTGHRGFQPVIDAIIRLAERAAKDPRDLNVADKSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +   ++ + + +LR +  +  K  R   +D +K K+ +    E   + +++  +   F D
Sbjct: 241 VTAAVAAIAEAELRTAYKLTVKQERYAAVDAVKAKVFAALLPEGGEAKFSKEHVAEAFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  VR+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LQAKVVRWNILDDGVRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VDSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  A
Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ KP AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM +AL QA+ GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALAQARDGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ SR +LGEF PR+E + I  D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTTSRAELGEFAPRIETLKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI   PEV +IY+G VVK  DFGAFV+F GA+DGLVHISQL+ +RV
Sbjct: 601 SDANSIKAAINWIKSIASDPEVGQIYEGTVVKTADFGAFVNFFGAKDGLVHISQLAKQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KT+DVVKEGD V VKLL FDDRGK++LSM+VVDQ TG+
Sbjct: 661 NKTTDVVKEGDKVKVKLLGFDDRGKVRLSMRVVDQQTGE 699


>gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           ORS278]
 gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278]
          Length = 719

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/699 (60%), Positives = 546/699 (78%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ +DG DF PLT
Sbjct: 1   MFTKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V++VAASAAL LSG+PF+GP+  A+V + N +Y+LNP LDE     LDL V+
Sbjct: 121 DMENDPDIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PVI AI +LA+  AK+P  +   D S 
Sbjct: 181 GTSDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPRDVAIIDNSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  + ++DLR +  I  K  R   +  +K+K+++YF  E     +++  + +VF++
Sbjct: 241 IEKEMLGIAEQDLRKAYAIAIKQERYAAVGAVKEKVMAYFFPEGQEPKYDKLRVAAVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD++TVR+I  +VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT R+VSE+TES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  F +LS
Sbjct: 421 EFPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   I  D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    ++AA + I+SI   PEV +IY G VVKVM+FGAFV+F G RDGLVHISQL+ +RV
Sbjct: 601 SDGEAMKAAIKWIKSIASDPEVGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQLADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KT+DVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 QKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGE 699


>gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           excentricus CB 48]
 gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           excentricus CB 48]
          Length = 760

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/700 (59%), Positives = 538/700 (76%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEWAGR L LETGRIARQ+D AVLATYGET VLATVVY R+ K GQDFFPLT
Sbjct: 11  MFDIKRKTIEWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLT 70

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+ H
Sbjct: 71  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSH 130

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P ++ MVAASAAL LSG+PF GP+ GA+V  IN +YVLNP LD+  + +LDL V+
Sbjct: 131 DMENDPDILGMVAASAALTLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESALDLVVA 190

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDA++MVE EA +LSED +L A++F H   +PVI+AI +LA+  AKEP   +++DFS 
Sbjct: 191 GTQDALMMVESEAQELSEDKMLGALMFAHAGMQPVIDAIIELAEHAAKEPFEFEAEDFSD 250

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIV-SVFE 296
           +  ++  ++  D+  +     K+ R   + + KKK  +    S E+    E  I  S F+
Sbjct: 251 VVAKIKDLVGPDIIAAYAHKGKHERHAAVGEAKKKAAAVLVKSEENPEGYEPAIFGSAFK 310

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  ++D   R+DGR  + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 311 ECEADVLRRDIIDHGKRVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGT 370

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 371 GEDEQFIDALEGTYKERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSA 430

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYTLR+VSEITES+GSSSMATVCG+SL+LMDAGVP+ +PV+GIAMGL+ + D + +L
Sbjct: 431 EEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPVSGIAMGLILEKDGYAVL 490

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM  AL+QA  GRLHIL EM+
Sbjct: 491 SDILGDEDHLGDMDFKVAGTELGITSLQMDIKVPGITEEIMTKALRQANEGRLHILGEMN 550

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S +R +LGEF P++E + I  D+IR VIG GGKVIR IVE+TGAK++I +DGT+KIA
Sbjct: 551 KAISGAREELGEFAPKIETIKIATDKIREVIGSGGKVIREIVEKTGAKIDIGEDGTIKIA 610

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  ++I+AAR+ I+SI   PE+  IYKG+VVKV+DFGAFV+F GA+DGLVHISQ+  E+
Sbjct: 611 ASEQSKIDAARDWIKSIASEPEIGAIYKGKVVKVVDFGAFVNFFGAKDGLVHISQIKNEK 670

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VAKTSDV+ EGD V VK L FDDRGK KLSMKVVDQ TG+
Sbjct: 671 VAKTSDVLSEGDEVKVKFLGFDDRGKTKLSMKVVDQETGE 710


>gi|304320664|ref|YP_003854307.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
           bermudensis HTCC2503]
 gi|303299566|gb|ADM09165.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
           bermudensis HTCC2503]
          Length = 708

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/699 (58%), Positives = 534/699 (76%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +     EWAGRPL LETGRIARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFTITKKTTEWAGRPLTLETGRIARQADGAVLATYGETTVLATVVGQKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF+  +KNE QV+  VM H
Sbjct: 61  VNYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAPGFKNEVQVVCTVMSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P VV+M+AASAAL +SG+PF GP+  A+V Y +G+Y++NP   + +GS LDL ++
Sbjct: 121 DLENDPDVVAMIAASAALTISGIPFMGPIGAARVAYKDGEYLVNPTGADLEGSRLDLVMA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA++LSED++L A+I GH   K +I+ I   A+ CAKEP      DFS 
Sbjct: 181 GTADAVMMVESEADELSEDIMLGAVIKGHAAAKEMIDHIISFAEQCAKEPWDYQPPDFSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
            +  + +  +  L  +    +K  R   I + K+      + + ++   +   + ++ + 
Sbjct: 241 QKPRVEEAARSGLAAAYQQTDKTQRVAAIGEAKQAAYDALTGDDAADPMDPAVVATLLKQ 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++++VR  +++ + R+DGRD++TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 IESEIVRNAIIEGRPRIDGRDTKTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT + +F++HYNF P + GE  RMG+P RREIGHG+LA RA+  VLP   
Sbjct: 361 DDEQFIDALEGTYKENFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRAVLPSQE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ + VAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYVIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGEQFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+K+ GI+E IM  AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKVAGITEEIMQTALGQAKDGRMHILGEMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS SR +LGEF PR+E M IP D+IR+VIG GGKVIR IVE+TGAK+N++DDGT+KIAS
Sbjct: 541 ALSASRGELGEFAPRIETMKIPVDKIRDVIGSGGKVIREIVEKTGAKINVEDDGTIKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  ++I+AA + IR +TD PEV ++YKG+VVK +DFGAFV+F GARDGLVHISQL+  R 
Sbjct: 601 SEHSQIDAAVKWIRGLTDEPEVGEVYKGKVVKTVDFGAFVNFFGARDGLVHISQLNDGRP 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            KT+DVVKEGD V+VKLL FDDRGK++LSMKVVDQ TGK
Sbjct: 661 EKTTDVVKEGDEVFVKLLGFDDRGKVRLSMKVVDQETGK 699


>gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 733

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/700 (60%), Positives = 533/700 (76%), Gaps = 2/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VEI+W GR LKLETG  ARQ+D AV+A YG+T VLATVV  RS+K G DFFPLT
Sbjct: 1   MFDIHRVEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGGY +RE RP+E E L SR+IDR IRPLF + +KNETQV++ V+ H
Sbjct: 61  VNYQERTYAAGKIPGGYFKREGRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P ++ MVAASAAL LSGLPF GP+ GA+V  +NG+ VLNP +DE + S LDL V+
Sbjct: 121 DLENDPDILGMVAASAALTLSGLPFLGPIGGARVGLVNGELVLNPMIDEMKDSALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA +L E  +L+A++FGH   +PVI+AI  LA+  AKEP  I   D +K
Sbjct: 181 GTADAVMMVESEAKELPEAQMLEAVVFGHKHMQPVIQAIITLAEKAAKEPWDIKIPDKAK 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDI 298
              E+ ++ ++ L+ +    EK  R   + + KK +    S      NE  ++S  F+ +
Sbjct: 241 YAGEVKKLAEKTLKQAFSTKEKGKRQDLVAEAKKAISEGISIPADDPNEKVLLSDAFKAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  ++R  +L  K+R+DGRD +TVR I ++V +L RTHGS+LF RG+TQA+VV TLGT E
Sbjct: 301 EMDIMRGDVLKTKMRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGE 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ++DSL GT++  F++HYNF P + GEV RMG+P RREIGHG+LA RAIHP+LP    
Sbjct: 361 DEQFIDSLEGTKKERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+  PVAGIAMGL+K+GD+F++LSD
Sbjct: 421 FPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGDEFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+T++QMD+KI GI+E IM +AL QA  GR+HIL EM+K 
Sbjct: 481 ILGDEDHLGDMDFKVAGTANGVTSLQMDIKITGITEEIMRIALDQAHDGRIHILGEMAKS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+ +R +LGEF PR+E + IP D+IR VIG GG VIR IV ++GAK++I+DDGTVKIAS+
Sbjct: 541 LTGAREELGEFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAKIDIEDDGTVKIASA 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   IE A   IR IT  PEV +IYKG+VVKVM+FGAFV+F GA+DGLVHISQL+  R  
Sbjct: 601 NRESIEKALARIRGITSEPEVGQIYKGKVVKVMEFGAFVNFFGAKDGLVHISQLAPGRPE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
               VVKEG  V+VKLL FDDRGK +LSMK+VDQ TG+ I
Sbjct: 661 SVGAVVKEGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEI 700


>gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           radiotolerans JCM 2831]
 gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 739

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/701 (59%), Positives = 533/701 (76%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG++ARQ+DGAV+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELMWGDRKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKPGIDFMPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178
           DLE+ P +V+MVAASAAL LSG+PF GP+ GA+V YING Y LNP + E  ++ SLDL V
Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEESSLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP    + + +
Sbjct: 181 AGTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFKAPENA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFED 297
            +E+ + ++ + +LR +     K  R   +D +K K+++    E +     E V + F++
Sbjct: 241 DVEKAVLEVCEAELRAAYTKTVKQERYAAVDAVKAKVMAALCPEGAEKFPAEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDSGARIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTDEGVTSLQMDIKIAGITEEIMKIALAQAKDGRAHILAEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGKVIR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDTGVVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I+AA   IRSI   PEV  IY G +VK M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 ADGKAIKAAYNWIRSIVAEPEVGVIYDGTIVKCMEFGAFVNFFGAKDGLVHISELAAQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK  DVVKEGD V VK L  DDRGKI+LSMKVVDQ TG+ I
Sbjct: 661 AKVQDVVKEGDKVKVKFLGQDDRGKIRLSMKVVDQQTGEDI 701


>gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter
           autotrophicus Py2]
 gi|226704833|sp|A7IC03|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter
           autotrophicus Py2]
          Length = 730

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/701 (60%), Positives = 544/701 (77%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETG++ARQ+DG+VLATYG+T VLATVV  R  K GQDFFPLT
Sbjct: 1   MFDIHREELDWGGRTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + YK +TQV+I V+ H
Sbjct: 61  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P VV+MVAASAAL LSG+PF GPV  A+V +I+ +YVLNP +DE  + +L+L V+
Sbjct: 121 DLENDPDVVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKESALELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVIEAI KLA+  AKEP      D S+
Sbjct: 181 GTGDAVLMVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKEPRNFQPADVSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVS-VF 295
           +E ++ ++ + DLR +  I +K  R   +   K K+  Y+     + +     ++VS V 
Sbjct: 241 VESKVREIAEADLRAAYKIKQKQDRYAAVGAAKSKVKKYYEELALDGTKVPTAQVVSDVL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++AK+VR  +LD  +R+DGRD  TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 301 KALEAKIVRWNILDDGIRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP 
Sbjct: 361 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR+VSEI ES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+ +G+ F +
Sbjct: 421 KHEFPYTLRVVSEILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K L+ +R +LGE  PR+E+M I  D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI
Sbjct: 541 AKALTTARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV +IY+G VVKV+DFGAFV+F G++DGLVH+SQ++ E
Sbjct: 601 ASASGDAIKAAINWIKSIASEPEVGQIYEGTVVKVVDFGAFVNFFGSKDGLVHVSQMANE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RVAK SDVVKEGD V VKL+ FD+RGK +LSMKVVDQ TG+
Sbjct: 661 RVAKPSDVVKEGDKVKVKLMGFDERGKTRLSMKVVDQTTGE 701


>gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum
           lavamentivorans DS-1]
 gi|187610324|sp|A7HZ97|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum
           lavamentivorans DS-1]
          Length = 728

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/702 (59%), Positives = 537/702 (76%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +   EIEW GR L LETG+IARQ+DGAVLATYG+T VLATVV +R  K G DFFPLT
Sbjct: 1   MFKITREEIEWGGRTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNETQVI  V+ H
Sbjct: 61  VNYQEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+M+A SAAL +SGLPF GP+  A+V YI G+Y LNP +DE  + +LDL V+
Sbjct: 121 DMENDPDIVAMIAVSAALTISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA +LSED++L A++FGH E +PVI+ I ++A+ CAKEP  ID KD S+
Sbjct: 181 GTADAVMMVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKEPRAIDVKDNSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L  ++ ++ + D+R +  + +K  R + +   K K+ S   +  + ++ +E ++  VF+ 
Sbjct: 241 LVAKVRELAESDVRAAYGLKDKGQRHEALAAAKDKVKSALCNPEDPNAVSETDVGGVFKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ VVR  +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IESDVVRNSILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT + +F++HYNF P + GE  R+G   RRE+GHG+LA RA+  VLP   
Sbjct: 361 DDEQFIDALEGTYKENFLLHYNFPPFSVGETGRVGFTGRREVGHGKLAWRALRAVLPPKT 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLA+MDAGVP+ + VAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM  AL QAK GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTQEGVTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R ++GE+ PR+E++ +P D+IR VIG GGKVIR IVE+TGAKV+I DDGT+K+AS
Sbjct: 541 ALDTARPEMGEYAPRIEVITVPTDKIREVIGTGGKVIREIVEKTGAKVDISDDGTIKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A   I+ I   PEV KIY+G VVK +DFGAFV+F G RDGLVHISQ++  RV
Sbjct: 601 SDGESIRKAIAWIQGIVAEPEVGKIYEGTVVKAVDFGAFVNFFGPRDGLVHISQMAPTRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            + SDVVKEGD V VKLL FDDRGK++LSMK V+Q TG+ IV
Sbjct: 661 EQVSDVVKEGDKVKVKLLGFDDRGKVRLSMKHVNQETGEEIV 702


>gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
           21756]
 gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
           21756]
          Length = 712

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/700 (58%), Positives = 528/700 (75%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +S K GQDFFPLT
Sbjct: 1   MFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++ MVAASAAL LSG PF GP+  A+V +++G YVLNP LDE  +  +DL V+
Sbjct: 121 DLENDPDILGMVAASAALTLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE E  +LSE++VL  + F H + + VI+AI  LA+  AKEP   + +D   
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           ++ EM  ++  D+     I +K  R + I + KKK +       +  + ++  ++ ++F+
Sbjct: 241 IKAEMKGIVGADIAAGYKITKKQDRYEAIGNAKKKAIEALGKSDTNPAGYDPQKLAAIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A VVR  +LD  +R+DGRD  TVR I  +VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 ELEADVVRRGILDTGLRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PV+GIAMGL+ + D F +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEKDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+  IM  AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPQIMEQALAQAKEGRAHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R  +G+F P++E + IP D+IR VIG GGKVIR IV  TGAKV+I+DDG VK++
Sbjct: 541 KAMDAPREDVGDFAPKIETITIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGIVKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  A+I+AA + I+SITD  EV KIY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 ASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VAK SDV+KEG  V VKLL FDDRGK KLSMKVVDQ TG+
Sbjct: 661 VAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGE 700


>gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           nodulans ORS 2060]
 gi|254782728|sp|B8IGX3|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060]
          Length = 725

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/701 (59%), Positives = 529/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W GR L LETG++ARQ+DGAV+A+YGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P +VSMVAASAAL LSG+PF GP+  A+V Y+  QY LNP + E +GS LDL V+
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L EDV+L A++FGH   +PVIEAI +LA+  AKEP      D S+
Sbjct: 181 GTEAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFED 297
           +E+ + ++ + DLR +     K  R   +D +K K+++  + E   + +    + + F++
Sbjct: 241 VEKAVLEIGEADLREAYKKTVKQERYAAVDAVKAKVMAALAPEEGEAKFEPETVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD   R+DGRD  TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 VQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP   
Sbjct: 361 DDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E M IP D+IR VIG GGKVIR IVE+TGAK++I D G +KIAS
Sbjct: 541 ALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVIKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G VVK M+FGAF++F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDAKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFINFFGAKDGLVHISELAPQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK +DVVKEGD V VK L  D+RGKI+LSMKVVDQ TG+ I
Sbjct: 661 AKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDI 701


>gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
           4-46]
 gi|226702664|sp|B0UEX5|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp.
           4-46]
          Length = 725

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/699 (59%), Positives = 528/699 (75%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD    E+ W GR L LETG++ARQ+DGAV+A+YGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDTQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +VSMVAASAAL LSG+PF GP+  A+V Y+ GQY LNP + E ++ SLDL V+
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA +L EDV+L A++FGH   +PVIEAI +LA+  AKEP      D ++
Sbjct: 181 GTDAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLTE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+ + ++ + DLR +     K  R   +D +K K+++    E   + +   ++ + F++
Sbjct: 241 VEKAVLEIGEADLREAYRKTVKQERYAAVDAVKAKVMAALVPEGGEAKFEPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD   R+DGRD  TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 VQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP   
Sbjct: 361 DDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+ +G+ + +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E M IP D+IR VIG GGKVIR IVE+TGAK++I D G VKIAS
Sbjct: 541 ALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G VVK M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFVNFFGAKDGLVHISELAPQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AK +DVVKEGD V VK L  D+RGKI+LSMKVVDQ TG+
Sbjct: 661 AKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGE 699


>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
           BJ001]
 gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
           BJ001]
          Length = 745

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/701 (59%), Positives = 530/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DGAV+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELIWGDRKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +VSMVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFSPPENAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E+ +  + + +LR +  I  K  R K +D +K K+V+    +     ++  ++ + F++
Sbjct: 241 VEKAVLDICESELRDAYKITVKQDRYKAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD GIT++QMD+KI GI+E IM +AL QAK GR HIL EM++
Sbjct: 481 DILGDEDHLGDMDFKVAGTDEGITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGVVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAPQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+ I
Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDI 701


>gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 709

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/701 (58%), Positives = 540/701 (77%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+   E+EW GR L LETGRIARQ+DGAVLA YGET VLATVV +R     +DFFPLT
Sbjct: 1   MFDIFREEVEWGGRKLTLETGRIARQADGAVLAHYGETSVLATVVGERDADPSKDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE RPTE E L+SR+IDR IRPLF+  +KNETQVI+ V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGYFKREGRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D+E+ P +V+MVAASAAL +SGLPF GP+  ++V Y  G+Y+LNP  D+ + S LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT DAVLMVE EA +LSED++L A++FG    KPVI+AI  LA+  AKEP  I D+K+  
Sbjct: 181 GTVDAVLMVESEAKELSEDIMLGAVVFGQQGYKPVIDAIIGLAEQAAKEPWTIPDAKN-- 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           + E ++ +++++DL+ +  I  K  R  ++ + K K ++ F S+E ++  + ++   F++
Sbjct: 239 EFESKVKKLVEKDLKKAFQIAGKQERQTKVAEAKAKAIAEFVSAESTAGEKNKVAEAFKE 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+  VVRT +L    R+DGRD +TVR I +QVG++ RTHGSSLF RG+TQA+VV TLGT 
Sbjct: 299 IEKHVVRTSILKTGKRIDGRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLGTG 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+HP++P++ 
Sbjct: 359 EDEQWIDSLEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMMPKSD 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVPI  PVAGIAMGL+K+ +   +LS
Sbjct: 419 TFPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAPVAGIAMGLIKEAEGVAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+  IM +AL+QA  GRLHIL EMSK
Sbjct: 479 DIIGDEDHLGDMDFKVAGSANGVTALQMDIKITGITTEIMKIALEQAHEGRLHILGEMSK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGEF PR+E + IP D+IR VIG GG VIR IVE++GAK++I DDGTVKIA+
Sbjct: 539 ALNAARGELGEFAPRIETITIPTDKIREVIGSGGSVIRSIVEESGAKIDISDDGTVKIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++L+ I+ A   I+SI   PEV  IYKG+VVK+++FGAFV+F G+RDGLVHISQ++  R+
Sbjct: 599 ANLSSIQDAINRIKSIASEPEVGVIYKGKVVKIVEFGAFVNFFGSRDGLVHISQMAERRL 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              S+VVK+G  V+VK L FD+RGK++L+MK +DQ  GK +
Sbjct: 659 KHASEVVKDGQEVYVKCLGFDERGKVRLTMKGIDQTDGKEV 699


>gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
 gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
          Length = 748

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/699 (58%), Positives = 526/699 (75%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DG+V+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + +LR +     K  R   +D +K K+V+    +     ++  ++ + F++
Sbjct: 241 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+
Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGE 699


>gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           chloromethanicum CM4]
 gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
 gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           chloromethanicum CM4]
 gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
          Length = 745

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/699 (58%), Positives = 526/699 (75%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DG+V+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + +LR +     K  R   +D +K K+V+    +     ++  ++ + F++
Sbjct: 241 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+
Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGE 699


>gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens PA1]
 gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           extorquens PA1]
          Length = 752

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/699 (58%), Positives = 526/699 (75%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DG+V+ATYGET VLATVV  +  K G DF PLT
Sbjct: 8   MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 67

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 68  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 127

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 128 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 187

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 188 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 247

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + +LR +     K  R   +D +K K+V+    +     ++  ++ + F++
Sbjct: 248 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 307

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 308 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 367

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 368 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 427

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 428 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 487

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK
Sbjct: 488 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 547

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 548 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 608 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 667

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+
Sbjct: 668 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGE 706


>gi|329847329|ref|ZP_08262357.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           biprosthecum C19]
 gi|328842392|gb|EGF91961.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           biprosthecum C19]
          Length = 749

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/701 (58%), Positives = 536/701 (76%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    I+WAGR L LETGRIARQ+D AVLATYGET VLATVVY R+ K GQDFFPLT
Sbjct: 1   MFDIKRKSIDWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNE QV+  V+ H
Sbjct: 61  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+MVAASAAL LSG+PF GP+ GA+V  I+G++VLNP  D+  + +LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPIGGARVGIIDGEFVLNPTGDQVKESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DA++MVE EA +LSED +L A++F H   +PVIEAI ++A+  AKEP   +++DFS 
Sbjct: 181 GTTDALMMVESEAKELSEDKMLAALMFAHRGMQPVIEAIIEMAEHAAKEPFDFEAEDFSG 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHS--SWNEGEIVSVFE 296
           +   +  ++ +D+R +  I  K+ R   +   K K  ++   +E +    +  +  + F+
Sbjct: 241 IVTSIKGLVGQDIRDAYTITGKHDRHAAVGAAKSKAGLALLKTEANPDGVDAAKFGAAFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  +++   R+DGR  + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ECEADVLRRDIIEHGKRVDGRPVDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQY+D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQYIDALDGTYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTV 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+  PV+GIAMGL+ +   ++ I
Sbjct: 421 EEFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKSPVSGIAMGLILEPSGEYAI 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT +GIT++QMD+K+ GI+E IM  AL+QA  GRLHIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTVNGITSLQMDIKVPGITEEIMTKALRQANEGRLHILEEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +S +R +LGEF P++E + I  D+IR VIG GGKVIR IVE+TGAK++I DDGT+KI
Sbjct: 541 NKAISGAREELGEFAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKIDIQDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ++S  ++I+AAR+ ++SI   PEV  IYKG+VVKV+DFGAFV+F GA+DGLVHISQ+S E
Sbjct: 601 SASEQSKIDAARDWVKSIASEPEVGAIYKGKVVKVVDFGAFVNFFGAKDGLVHISQISKE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +V K SDV+ EGD V VK L FDDRGK KLSMKV+DQ TG+
Sbjct: 661 KVGKVSDVLNEGDEVKVKFLGFDDRGKTKLSMKVIDQETGE 701


>gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 764

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/701 (58%), Positives = 533/701 (76%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    I+WAGRPL LETGRIARQ+DGAVLATYGET+VLATVVY R+ K G DFFPLT
Sbjct: 17  MFDIKRKTIDWAGRPLTLETGRIARQADGAVLATYGETIVLATVVYGRAPKPGLDFFPLT 76

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RPTE E L+SR+IDR IRPLF K +KNETQV+I V+QH
Sbjct: 77  VNYQEKTFAAGKIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQH 136

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P +V MVA SAAL LSG+PF GP+  A+V YI+G++VLNP LD+   S LDL V+
Sbjct: 137 DLENDPDIVGMVATSAALTLSGVPFMGPIGAARVGYIDGEFVLNPTLDQMPDSQLDLVVA 196

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DA++MVE EA +LSE V+LDA++F H   +PVI+AI ++A+  AK+P    ++D S 
Sbjct: 197 GTSDALMMVESEAKELSEQVMLDALMFAHRGMQPVIDAIIEMAEHAAKDPFDFQAEDHSG 256

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFE 296
           +  ++  ++ ED++ +   P K+ R + +   KKK  +       +    +  +    ++
Sbjct: 257 VVTQIQSLVGEDIKAAYTHPGKHARHEAVGAAKKKASAALVKTDENPDGVDSAKFGVAWK 316

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  ++D   R+DGR  + VRDI ++VG+  RTHGS+LF RG+TQAIVV TLGT
Sbjct: 317 ECEAHVLRRDIIDNAHRVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGT 376

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+GT +  F++HYNF P + GE  RMG   RREIGHG+LA RAI P+LP +
Sbjct: 377 GEDEQYVDSLAGTYKEKFLLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRAIRPMLPTS 436

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVP+ KPV+GIAMGL+ +   +F I
Sbjct: 437 EEFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPLKKPVSGIAMGLILEPSGEFAI 496

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+E IM  A+ QA  GRLHIL+EM
Sbjct: 497 LSDILGDEDHLGDMDFKVAGTRDGITSLQMDIKVAGITEEIMKKAIAQASAGRLHILDEM 556

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K +  +R +LGE+ P++E + +P D+IR++IG GGK+IR IVE+TGAK+NI+DDGTVKI
Sbjct: 557 DKAIDGARTELGEYAPKIESIKVPVDKIRDIIGTGGKIIREIVEKTGAKINIEDDGTVKI 616

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+S   +I+AA+  I SI   PE   IY G+VVKV+DFGAFV+F GA+DGLVH+SQ++ E
Sbjct: 617 AASDQEKIDAAKNWISSIVSEPEPGMIYSGKVVKVVDFGAFVNFFGAKDGLVHVSQIALE 676

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RVA  +DV+ EG  V VK L FDDRGK KLSMKVVDQ+TG+
Sbjct: 677 RVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVVDQSTGE 717


>gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
 gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
          Length = 745

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/701 (58%), Positives = 528/701 (75%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEWAGRPL LETGRIARQ+DGAVLATYGETVVLATVVY RS K G DFFPLT
Sbjct: 1   MFDIKRKTIEWAGRPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNETQV+I V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D+E+ P V+ MVAASAAL +SG+PF GP+  A+V  I+G+ VLNP +D+  GS LDL V+
Sbjct: 121 DMENDPDVLGMVAASAALTISGVPFMGPIGAARVGLIDGELVLNPTVDQIPGSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDA++MVE EA +LSE+ +L+A++F H   +PVI+AI  LA+  AKEP    ++D S 
Sbjct: 181 GTQDALMMVESEAKELSEEKMLEALMFAHAGMQPVIDAIIDLAEHAAKEPFDFQAEDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           +   + +++ ED++ +   P KY R   +D  KK   +            +  +  + F+
Sbjct: 241 VVTSIKKLVGEDIKAAYTHPGKYDRRSGVDAAKKTAAAALVKTDENPEGVDSSKFAAAFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  +++   R+DGR  + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ECEADVLRRDIIENAHRVDGRALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYIDSLQGTYKESFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
             FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PV+GIAMGL+ +   +F I
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLALMDAGVPLIRPVSGIAMGLILEPSGEFAI 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI++ IM  AL QA  GRLHIL+EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITKEIMKQALTQASAGRLHILDEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK +   R +LGE  P++E + I  D+IR VIG GGKVIR IVE+TGAK++I DDGT+K+
Sbjct: 541 SKAMDAPRAELGEHAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKIDIGDDGTIKV 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++   +I+AA+  I+SI   PEV  IY G+VVKV+DFGAFV+F GA+DGLVH+SQ++ E
Sbjct: 601 AANDQEKIDAAKAWIQSIASEPEVGTIYSGKVVKVVDFGAFVNFFGAKDGLVHVSQIALE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RVA  +DV+ EG  V VK L FDDRGK KLSMKVVDQ TG+
Sbjct: 661 RVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVVDQTTGE 701


>gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
           CB15]
 gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
           NA1000]
 gi|81536356|sp|Q9AC32|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782712|sp|B8GWZ0|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus
           CB15]
 gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide
           adenylyltransferase [Caulobacter crescentus NA1000]
          Length = 712

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/700 (58%), Positives = 532/700 (76%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +S K GQDFFPLT
Sbjct: 1   MFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++ MVAASAAL LSG PF GP+  A+V +++G YVLNP LDE  +  +DL V+
Sbjct: 121 DLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE E  +LSE++VL  + F H + + VI+AI  LA+  AKEP   + +D   
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEH-SSWNEGEIVSVFE 296
           ++ +M  ++  D+  +  I +K  R + +   KKK ++    S E+ + ++  ++ ++F+
Sbjct: 241 IKAKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLSDENPTGYDPLKLGAIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A VVR  +LD  +R+DGRD +TVR I  +VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 ELEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PV+GIAMGL+ + D F +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+  IM  AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R  +G+F P++E + IP D+IR VIG GGKVIR IV  TGAKV+I+DDG VK++
Sbjct: 541 KAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  A+I+AA + I+SITD  EV KIY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 ASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VAK SDV+KEG  V VKLL FDDRGK KLSMKVVDQ TG+
Sbjct: 661 VAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGE 700


>gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
 gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
          Length = 715

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/700 (57%), Positives = 524/700 (74%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEW G+ L LETGR+ARQ+DGAVLATYGET+VLAT V+ +S K GQDFFPLT
Sbjct: 1   MFDIKRKTIEWGGKTLTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG + RRE  P++ E L SR+IDR IRPLF K +KNE QVI  V+ H
Sbjct: 61  VNYQEKFYAAGKIPGSFPRREGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVAASAAL+LSG+PF GP+  A+V Y+NG+YVLNP LDE  + ++DL V+
Sbjct: 121 DLENDPDIVAMVAASAALVLSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESAMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AV+MVE E  +L+E+ VL  + F H   +PVI+AI +LA+  AKEP      D  +
Sbjct: 181 GTAEAVMMVESEIKELTEEQVLGGVTFAHKGMQPVIDAIIELAEHSAKEPFDFQPDDTDE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFE 296
           +  ++  +I  DLR +  I  K  R   I   K+K ++ F+   ++   ++  ++  VF+
Sbjct: 241 IAAKVKDLIGGDLRAAYQITGKSERHAAIGAAKEKAMTAFAKSEANPEGYDANKLGGVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+A +VR  +L+   R+DGR  + VR I  +VG+L R HGS+LF RG+TQA+ V TLGT
Sbjct: 301 EIEADIVRRSILETGKRIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D+L G     FM+HYNF P + GE  RMG+P RRE+GHG+LA RA+ P+LP  
Sbjct: 361 GDDEQLIDALEGKYFEKFMLHYNFPPFSVGETGRMGSPGRREVGHGKLAWRALRPMLPSY 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSEI ES+GSSSMATVCGSSLALMDAGVP+ KPV+GIAMGL+ + D F +L
Sbjct: 421 EEFPYTIRIVSEIFESNGSSSMATVCGSSLALMDAGVPLKKPVSGIAMGLILEKDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM  AL+QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++  R +LGEF P++E + IP D+IR VIG GGKVIR IVE+TGAK++I +DGT+KIA
Sbjct: 541 KAMTAPRAELGEFAPKIETIKIPVDKIREVIGSGGKVIREIVEKTGAKIDIGEDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++   +I+AA+E I+SI   PEV +IY G+VVK++DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 AAEQTKIDAAKEWIKSIASEPEVGQIYTGKVVKIVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VAK SDV+ EG  V VKLL FDDRGK +LSMKVVDQ TG+
Sbjct: 661 VAKVSDVLTEGQQVKVKLLGFDDRGKTRLSMKVVDQETGE 700


>gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum
           SW]
 gi|226702682|sp|B6IVG3|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum
           centenum SW]
          Length = 707

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/699 (57%), Positives = 531/699 (75%), Gaps = 5/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V   E+ W GR L LETG++ARQ+DGAV A+YG+TVVLAT V  ++ K G DFFPLT
Sbjct: 1   MFKVFRKEMMWGGRKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RPTE E+L SR+IDR IRPLF+  Y+NETQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P +V+MVA SAAL +SG+PF GP+  A+V Y +GQ+VLNP L++ + S LDL V+
Sbjct: 121 DLENDPDIVAMVATSAALTISGIPFLGPIGAARVGYKDGQFVLNPTLEQVEASDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA +L EDV+L A++FGH E +PVI+ I  LA+M AK+P+ I +  + K
Sbjct: 181 GTTEGVLMVESEAKELPEDVMLGAVMFGHREFQPVIDLIIDLAEMAAKDPMAIPAPAYDK 240

Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             ++  M+ +I +D+R +  +  K  R   I   K K +    +E ++     + SVF++
Sbjct: 241 DAVKTRMAALIGQDVRQAYTLTVKQERYAAIGAAKLKALETMVAEGTAPEA--VASVFKE 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++ ++R  +++   R+DGR +  +R I +QVG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 299 LESDILRGSVIETGKRIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGTN 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ VD+L G  R  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP   
Sbjct: 359 QDEQIVDALEGEYRESFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPLLPTKE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCGSSL++MDAGVP+ +PVAGIAMGL+K+G+ F +LS
Sbjct: 419 TFPYTIRVVSEITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+E IM +AL QAK GR+HIL+EM+K
Sbjct: 479 DILGDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMNK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + +  PR+ ++ IP D+IR+VIG GGKVIR IVEQTGAK++I+DDGTVK+A+
Sbjct: 539 ALNTAREAVNQNAPRITVINIPKDKIRDVIGSGGKVIREIVEQTGAKIDIEDDGTVKVAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 EAA + I+ I   PEV +IY+G+VVK+MDFGAFV+F G+RDGLVHIS+L  ERV
Sbjct: 599 VDGKASEAAIKWIKGIVAEPEVGEIYEGKVVKIMDFGAFVNFLGSRDGLVHISELKNERV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           AK +DVVK+GD V VK+L FDDRGK+KLSMKVVDQ TG+
Sbjct: 659 AKVTDVVKQGDAVKVKVLGFDDRGKVKLSMKVVDQTTGE 697


>gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum
           JF-5]
 gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
           AIU301]
 gi|187470957|sp|A5FVG2|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum
           JF-5]
 gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
           AIU301]
          Length = 717

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/702 (57%), Positives = 537/702 (76%), Gaps = 6/702 (0%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MFD +   E++W GR L LETG++ARQ+DGAV+A+YG+TVVLATVV  RS+K GQDFFPL
Sbjct: 2   MFDKYFRKELDWGGRKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKPGQDFFPL 61

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQE+ YA G+IPGG+ +RE RPTE E L SR+IDR IRPLF   ++NE QVI+NV+ 
Sbjct: 62  TVNYQEKFYAAGRIPGGFFKREGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLS 121

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
           HDLE+ P +VS+VAASAAL LSG+PF GPV  A++ YI+G+Y+LNP   +  +  LDL +
Sbjct: 122 HDLENEPDIVSLVAASAALTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESRLDLVL 181

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKD 236
           +GT++ VLMVE EA++LSE+ +L A+ FGH   +PVI+AI +LA+  AK+P  +V +S +
Sbjct: 182 AGTEEGVLMVESEAHELSEETMLGAVTFGHAAFQPVIQAIIELAEHAAKDPWPLVEESDE 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L   + ++ +E LR +    EK  R ++I  +K  ++   ++E  S  + +   +F+
Sbjct: 242 EKALAARVDELAREGLRAAYAEREKTARHEKIGAVKAAVLETLAAEERSVEKAK--GMFK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A +VR  +LD  +R+DGRD+ TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 300 ELEADIVRNAILDNGIRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ VD++ G  R  F++HYNF P + GE  R+G+P RRE+GHG+LA RAIHP+LP  
Sbjct: 360 AQDEQIVDAIEGEYRERFLLHYNFPPFSVGETGRVGSPGRREVGHGKLAWRAIHPLLPGK 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+   F +L
Sbjct: 420 DKFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDKGFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++G+T++QMD+KI  I+  IM +AL QAK GRLHIL EMS
Sbjct: 480 SDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKITSITPEIMKIALDQAKDGRLHILGEMS 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R  +    PR+ ++ +P D+IR+VIG GGKVIR IVE +G K++I+DDGT+KIA
Sbjct: 540 KALTGAREGVSANAPRITVINVPKDKIRDVIGTGGKVIREIVEYSGCKIDIEDDGTIKIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++S  + + A + IRS+T  PEV +IY G+VVK+ DFGAFV+F GARDGLVHIS+L+  R
Sbjct: 600 ATSDEQAQKAIDRIRSLTSEPEVGQIYTGKVVKIADFGAFVNFFGARDGLVHISELAQGR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VA+T DVVK GDTV VK++  DDRGK+KLSM+VVDQ TG  I
Sbjct: 660 VARTGDVVKVGDTVKVKMIGLDDRGKVKLSMRVVDQATGADI 701


>gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC
           49814]
 gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC
           49814]
          Length = 709

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/702 (59%), Positives = 527/702 (75%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+  V I+WAGRPL LETGRIARQ+DGAVLATYGET VLATVV  +      DFFPLT
Sbjct: 1   MFDIQKVTIDWAGRPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGG+ +RE+RPTE E L SR+IDR IRPLF   +KNETQV++ V+ +
Sbjct: 61  VNYQEKYYAAGRIPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P VV+MVAASAAL +SG+PF GP+  A+V Y +G+Y++NP LD+     LDL V+
Sbjct: 121 DMENDPDVVAMVAASAALTVSGVPFMGPIGAARVGYKDGEYIINPTLDQMADTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAV+MVE EA +LSE+V+L A++ GH   + VI+ I  LA+  AKEP     +D S 
Sbjct: 181 GTQDAVMMVESEAKELSEEVMLGAVMAGHESFQTVIDGIIDLAERSAKEPWDFQPEDKSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEH-SSWNEGEIVSVFE 296
              ++ +++  D+  +  I EK  R   + + ++K  +    S E+   W+E     +F+
Sbjct: 241 ELAKLEELVGADISAAYKIKEKAERYAAVGEAREKAAAQLVVSEENPEGWSEAFFKGIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++AKVVR  ++   VR+DGR  + VR I  +V +L RTHGS+LF RG+TQAI V TLGT
Sbjct: 301 SLEAKVVRGDIIKTGVRIDGRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D L GT +++FM+HYNF P + GEV RMG   RREIGHG+LA RA+  VLP  
Sbjct: 361 GEDEQFIDGLEGTSKSNFMLHYNFPPYSVGEVGRMGGAGRREIGHGKLAWRALKAVLPSN 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYTLR+VSEITES+GSSSMATVCGSSLA+MDAGVPI++PV+GIAMGL+KD D   +L
Sbjct: 421 EDFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPITRPVSGIAMGLIKDEDGIAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI++ IM  AL+QAK GR HIL+EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGLTSLQMDIKIAGITKEIMQTALEQAKGGRAHILDEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L  SR  +    PR+  M+IP D+IR+VIG GGKVIR IVE+TGAKV+++DDGTVKIA
Sbjct: 541 KALDGSRDDVSGNAPRIVTMSIPTDKIRDVIGTGGKVIRQIVEETGAKVSVEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I+AA + I  +T  PEV +IY+G+VVKVMDFGAFV+F GA+DGLVHISQL+ ER
Sbjct: 601 AVDKESIDAAYKWIHGLTAEPEVGEIYEGKVVKVMDFGAFVNFFGAKDGLVHISQLAEER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V +TSDVVKEG TVWVKLL FDDRGK++LSMKVVDQ TGK I
Sbjct: 661 VKQTSDVVKEGQTVWVKLLGFDDRGKVRLSMKVVDQETGKEI 702


>gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10]
 gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10]
          Length = 710

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/702 (57%), Positives = 516/702 (73%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEWAGRPL +ETGR+ARQ+DGAV+ +YGET VLAT V  +  K G DFFPLT
Sbjct: 1   MFDIQKETIEWAGRPLTIETGRVARQADGAVMVSYGETTVLATAVGVKQAKPGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RPT+ E L SR+IDR IRPLF K +KNE QV++ V+ H
Sbjct: 61  VNYQEKYFAAGKIPGGFFKREGRPTDKETLTSRLIDRPIRPLFVKGFKNEVQVMLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V M+ ASAAL+LSGLPF GP+  A+V Y +G+YV+NP  DE D   LDL V+
Sbjct: 121 DLENDPDIVGMIGASAALVLSGLPFMGPIGAARVGYKDGEYVINPPCDEMDDSELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAV+MVE EA +LSE+V+L A++ GH   +PVI+ I KLA+  AKEP      D S 
Sbjct: 181 GTQDAVMMVESEAKELSEEVMLGAVMAGHKAFQPVIDMIIKLAERAAKEPWDYAPADHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---VFE 296
            E ++  +I +DL  +  I +K  R K +   K K V          +  ++ +   V +
Sbjct: 241 EEAKVRDLIGDDLAAAYTIVDKTERYKAVGAAKDKAVEALLQTEERPDGIDMTTLKDVMK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +++ +VR  ++    R+DGR  + VR I ++ G+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 AVESSIVRGGIIKTGKRIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D+L+GT +  FM+HYNF P + GE S   AP RREIGHG+LA RA+  VLP  
Sbjct: 361 GEDEQFIDALTGTYKERFMLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRAVKAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG+SL++MDAGVPI++PV+GIAMGL+KD +   +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGASLSMMDAGVPITRPVSGIAMGLIKDPEGIAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI E IM  AL QA  GRLHIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGVTSLQMDIKIAGIDEEIMKTALAQASGGRLHILEEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L E+R +LGEF PR+E + IP D+IR+VIG GGKVIR IVE TGAKV+++DDG +K++
Sbjct: 541 KALGEARTELGEFAPRIETITIPTDKIRDVIGSGGKVIREIVETTGAKVDVNDDGVIKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+AA + I  +T  PE  +IYKG+VVKVMDFGAFV+F G +DGLVH+SQL  ER
Sbjct: 601 SSDGASIKAALDWIHGLTAEPEEGQIYKGKVVKVMDFGAFVNFFGPKDGLVHVSQLKAER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V   SDVVKEG  V+VKLL FDDRGK++LSMK++DQ TG+ I
Sbjct: 661 VNHPSDVVKEGQEVYVKLLGFDDRGKVRLSMKIIDQETGEEI 702


>gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31]
 gi|189037303|sp|B0T175|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31]
          Length = 716

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/700 (57%), Positives = 523/700 (74%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +  K GQDFFPLT
Sbjct: 1   MFEIMRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+TYA GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV+  V+QH
Sbjct: 61  VNYIEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+M AASAAL++SG PF GP+ G +V Y+N +Y+LNP LDE  +  +DL V+
Sbjct: 121 DLENDPDIVAMCAASAALVISGAPFMGPIGGCRVGYVNDEYILNPTLDELKESKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE E  +LSE++VL  + F H   + VI  I +LA+  AKEP     +D   
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVSFAHKSMQAVINGIIELAEHAAKEPFDFQPEDTDA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           L+ E+ + +  DL  +  I  K  R   +   K K V  F+   +  +  +  +++SVF+
Sbjct: 241 LKAEVKKAVGADLADAYTIRAKGDRHAALSAAKSKAVDTFAKSDANPAGIDPLKLISVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A +VR  +LD  +R+DGR  +TVR I  +VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 ELEADIVRRSILDTGIRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQFIDALEGTYKEAFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRALRPMLPAK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG+SLA+MDAGVP+ +PV+GIAMGL+ + D F +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGASLAMMDAGVPLIRPVSGIAMGLILEKDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM  AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSQGLTSLQMDIKIAGITEEIMKQALAQAKGGREHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R ++G++ P++E + IP D+IR VIG GGKVIR IV  TGAKV+I+D+GTVK++
Sbjct: 541 KAMDAPREEVGDYAPKIETITIPTDKIREVIGTGGKVIREIVATTGAKVDINDEGTVKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  A+I+AA + I+SIT   EV  IY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 ASDGAKIKAAIDWIKSITQEAEVGAIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VAK SDV+KEG  V VKLL FDDRGK KLSMKVVDQ TG+
Sbjct: 661 VAKPSDVLKEGQIVKVKLLGFDDRGKTKLSMKVVDQETGE 700


>gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
           SXCC-1]
 gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
           SXCC-1]
          Length = 761

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/706 (57%), Positives = 520/706 (73%), Gaps = 17/706 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V  +S+K GQDFFPLT
Sbjct: 50  MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 109

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+E E+L SR+IDR IRPLF + ++NE QV+  V+ H
Sbjct: 110 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 169

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P VV+++  SAAL LSG+PF GPV  A+V Y NG+YVLNP + +  +  LDL V+
Sbjct: 170 DMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVVA 229

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA +LSEDV+L A+ FGH   +PVI+ I  LA+  AK P      D ++
Sbjct: 230 GTSEGVLMVESEAVELSEDVMLGAVTFGHEAFQPVIDLIIDLAESAAKAPW-----DLAE 284

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKY------VRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              EE+    K D      I E Y      VR K++   ++ +++      +   +    
Sbjct: 285 PTAEEIKLRKKVDKAGRALIAEAYKERAKQVRYKKVAAAREAILAKIGEADADAAK---- 340

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            + +D++A VVRT +LD   R+DGRD ET+R I ++VG+L R HGS+LF RG+TQA+VV 
Sbjct: 341 PMIKDLEADVVRTEVLDTGYRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVA 400

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ VD+L G  RN+FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+
Sbjct: 401 TLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPL 460

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ DD
Sbjct: 461 LPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEDD 520

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +LSDI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+  IM +AL QA++GRLHIL
Sbjct: 521 FAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHIL 580

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+E R  +    P++  +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT
Sbjct: 581 GEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGT 640

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + IA+SS  + E A E IR IT  PEV  IY G+VVK  DFGAFV+F G RDGLVHIS+L
Sbjct: 641 IMIAASSDDQAEKAIERIRGITAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISEL 700

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +  RV+KT+DVVK+GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 701 AEGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQKTGADI 746


>gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 709

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/696 (56%), Positives = 519/696 (74%), Gaps = 4/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+ T  IEWAGR L LETGR+ARQ++GAVLATYGET VLAT V  + +K G DFFPLT
Sbjct: 1   MFDIQTETIEWAGRTLTLETGRMARQANGAVLATYGETTVLATAVAQKDVKPGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RPT+ E L SR+IDR IRPLF K +KN+TQV+I V+ H
Sbjct: 61  VNYQEKYFAAGKIPGGYFKREGRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMITVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P VV M+ ASAAL LSGLPF GP+  A+V Y +G+Y++NP + E D   LDL V+
Sbjct: 121 DLENDPDVVGMIGASAALCLSGLPFLGPIGAARVGYKDGEYIINPTVAEMDDTELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA +LSE+ +L A++ GH   +PVI+ I +LA+  AK+P   + +D S 
Sbjct: 181 GTSDAVMMVESEAKELSEETMLGAVMAGHEAFQPVIDMIIRLAEKAAKDPWEFEPEDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV---SVFE 296
           LE ++  ++ +++  +  I  K  R   +   K+K V+  ++   + +  ++V    V +
Sbjct: 241 LEAKVKALVGDEIAKAYTITNKTERQAAVSAAKEKAVAELAATEENPDGADMVVLKDVLK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A VVR  ++    R+DGR  + VR I ++  +L RTHGS+LF RG+TQA+ VVTLGT
Sbjct: 301 GVEASVVRGGIIKTGKRIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D+L+GT +  F++HYNF P + GE S   AP RREIGHG+LA RA++ V+P  
Sbjct: 361 GEDEQFIDALTGTYKERFLLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRALNAVMPNA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVPI++PV+GIAMGL+KD +   +L
Sbjct: 421 ETFPYTVRLVSEITESNGSSSMATVCGGSLALMDAGVPITRPVSGIAMGLIKDPEGVAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+++IM  AL QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITKDIMQTALNQAKGGRMHILEEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K LS +R  L E  P++E + IP D+IR+VIG GGKVIR IVE+TGAKV+++D+G +K++
Sbjct: 541 KALSGTREALNEHAPKIETIQIPTDKIRDVIGSGGKVIRQIVEETGAKVDVNDEGLIKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S S   I+AA + I+ +T  PEV +IYKG+VVKV+DFGAFV+F G RDGLVH+SQ+  ER
Sbjct: 601 SVSADSIKAALDWIKGLTAEPEVGEIYKGKVVKVVDFGAFVNFFGPRDGLVHVSQMKNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V    DVV EG  VWVKLL FDDRGK++LSMKVVDQ
Sbjct: 661 VGHPKDVVSEGQEVWVKLLGFDDRGKVRLSMKVVDQ 696


>gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
           ATCC 49957]
 gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
           ATCC 49957]
          Length = 735

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/702 (56%), Positives = 532/702 (75%), Gaps = 8/702 (1%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MFD +   +I W G+ L LETG++ARQ+DGAV+A  G+T+VL TVV  RS+K GQDFFPL
Sbjct: 1   MFDNYFRKDIAWGGKTLTLETGKVARQADGAVMARLGDTIVLCTVVGARSVKPGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQE+ +A GKIPGG+ +RE RP+E E LISR+IDR IRPLF + ++NE QVI  V+ 
Sbjct: 61  TVNYQEKAFAAGKIPGGFFKREGRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
           HD+E+SP +V++V  SAAL LSG+PF GPV  A+V YI+GQYVLNP L++ + + LDL V
Sbjct: 121 HDMENSPDIVALVGCSAALTLSGIPFFGPVGAARVAYIDGQYVLNPTLEQMKNTQLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-- 236
           +GT + VLMVE EA++L+E+V+L A+ FGH   +PVIE I +LA+  AKEP  +  +D  
Sbjct: 181 AGTAEGVLMVESEASELTEEVMLGAVTFGHQSFQPVIEGIIELAEKAAKEPWDLPEEDPA 240

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            + L+ +++++ +  +  +    +K +R  ++ + KK +++  S + ++  +G    + +
Sbjct: 241 VAALKAKLAELGRAPIAEAYKETQKLLRQTKVGEAKKAILAQLSEDEAAMAKG----LLK 296

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A VVR  +LD  +R+DGRD++TVR I A+VG+L R HGS+LF RG+TQA+ V TLGT
Sbjct: 297 ELEADVVRNAILDTGLRIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALAVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D L+G  R +FM+HYNF P +  E  RMG+P RREIGHG+LA RAIHP+LP+ 
Sbjct: 357 GQDEQIIDQLAGEYRENFMLHYNFPPYSVNETGRMGSPGRREIGHGKLAWRAIHPLLPEK 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMATVCG+SL+LMDAGVP+ +P AGIAMGL+K+   F +L
Sbjct: 417 EKFPYTMRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPCAGIAMGLIKEEKGFAVL 476

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GITA+QMD+KI  I+  IM +AL+QAK GRLHIL EM+
Sbjct: 477 SDILGDEDHLGDMDFKVAGTEQGITALQMDIKITSITPEIMKIALEQAKGGRLHILGEMA 536

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R  +    P++ ++ +P D+IR VIG GGKVIR IVE TG K++I+DDGT+KIA
Sbjct: 537 KGLTGARTDVAANAPKITVINVPKDKIREVIGTGGKVIRDIVETTGTKIDIEDDGTIKIA 596

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S    +AA + IR IT  PE+  IY G VVK  +FGAFV+F GA+DGLVHIS+L+ ER
Sbjct: 597 STSPEATQAAIDRIRGITAEPEIGVIYNGTVVKTAEFGAFVNFLGAKDGLVHISELANER 656

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+D+VK+GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 657 VAKTTDIVKQGDKVKVKVLGFDDRGKVKLSMRVVDQATGADI 698


>gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
 gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
          Length = 711

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/699 (56%), Positives = 520/699 (74%), Gaps = 6/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF VH  EIEW GR L LETG+IARQ++GAVL TYG+T VL T V  ++ K G DFFPLT
Sbjct: 9   MFTVHRKEIEWGGRKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI  V+ H
Sbjct: 69  VNYQEKAFAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSH 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +VSMV ASAAL +SG+PF GP+  A+V Y NGQY+LNP +D+ +   LDL V+
Sbjct: 129 DLENDPDIVSMVGASAALTISGIPFLGPIGAARVGYKNGQYILNPTMDQVEDTDLDLVVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA +L+E+V+L A++FGH+  +PVI  I  LA+  AKEP  +    + +
Sbjct: 189 GTTEGVLMVESEAKELTEEVMLGAVMFGHSNFQPVINMIIDLAEEAAKEPWDLPEPAYDR 248

Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L+  + + +   +  +     K  R +++   K K +   + E  + + G     F++
Sbjct: 249 KALKARLRETVGAAVEAAYTETVKQSRYEKVGAAKAKALETLAEEFDAQSIG---FEFKE 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A ++R  +L    R+DGRD++TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 306 LEADILRGAVLKTGRRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTS 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP+  
Sbjct: 366 QDEQIIDALEGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKKE 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYTLR+VSE+TES+GSSSMATVCG+SL+LMDAG P+++PVAGIAMGL+K+   F +LS
Sbjct: 426 DFPYTLRVVSEVTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFAVLS 485

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+E IM +AL QAK GRLHIL EM+K
Sbjct: 486 DILGDEDHLGDMDFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMAK 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + E  PR+ ++ IP ++IR+VIG GGKVIR IVEQTGAK++IDDDGTVK+++
Sbjct: 546 ALTGAREGVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIDDDGTVKVSA 605

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
               + +AA E I+ I   PE+  +Y G+VVKV+DFGAFV+F G+RDGLVHIS+L+ +RV
Sbjct: 606 VDQKKSDAAIEWIKGIVAEPEMGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISELAQQRV 665

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SDVV +GD+V VK++ FDDRGK+KLSMK VDQ TG+
Sbjct: 666 GKVSDVVSQGDSVKVKVIGFDDRGKVKLSMKQVDQATGE 704


>gi|162147166|ref|YP_001601627.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544221|ref|YP_002276450.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|187610270|sp|A9HF35|PNP_GLUDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161785743|emb|CAP55314.1| putative polyribonucleotide nucleotidyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531898|gb|ACI51835.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 712

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/705 (57%), Positives = 517/705 (73%), Gaps = 13/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +  EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V  RS+K GQDFFPLT
Sbjct: 1   MFNYYRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGARSVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E+L SR+IDR IRPLF + ++NE QV+  V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPSEIEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P + +++  SAAL LSG+PF GPV   +V Y +G Y+LNP L E  + +LDL V+
Sbjct: 121 DLENDPAIAALIGCSAALTLSGIPFFGPVAACRVGYADGAYILNPTLPEMKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA++LSEDV+L A+ FGH   + VI+AI  LA+  AK P   D  + S 
Sbjct: 181 GTSEGVLMVESEASELSEDVMLGAVTFGHEAFQAVIDAIISLAEHAAKAPW--DLAEPSA 238

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYV------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            E  + Q I    R +  I E Y       R K++   K+ +++  ++E       +   
Sbjct: 239 EEIALKQRIDTLGRAA--IAEAYQERVKQQRYKKVGAAKEAVLAALATEGLDVTAAK--P 294

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + +D++A VVR+ +LD   R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV T
Sbjct: 295 ILKDLEADVVRSAVLDTGYRIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQALVVAT 354

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+L
Sbjct: 355 LGTAQDEQVIDALEGEYRTNFMLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRAIHPLL 414

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+RIVSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+   F
Sbjct: 415 PGKDTFPYTMRIVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDRGF 474

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAGT+SGITA+QMD+KI  I+  IM +AL QA+ GRLHIL 
Sbjct: 475 AVLSDILGDEDHLGDMDFKVAGTESGITALQMDIKITSITPEIMKIALGQARDGRLHILG 534

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EMSK L+E R  +    P++  +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT+
Sbjct: 535 EMSKALTEGRSDVSSTAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTI 594

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IA+SS  +   A E IR I   PE+  IY G+VVK  DFGAFV+F GARDGLVHIS+L+
Sbjct: 595 MIAASSEDQATRAIERIRGIVAEPELGAIYTGKVVKTADFGAFVNFLGARDGLVHISELA 654

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             RVAKT+DVV +GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 655 QGRVAKTTDVVNQGDVVKVKVLGFDDRGKVKLSMRVVDQQTGADI 699


>gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 710

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/701 (56%), Positives = 524/701 (74%), Gaps = 7/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD    EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V  +S+K GQDFFPLT
Sbjct: 1   MFDYFRTEIEWGGRPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+E E+L SR+IDR IRPLF   ++NE QV+  V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+++  SAAL LSG+PF GPV   +V YI+G+YVLNP + +  + +LDL V+
Sbjct: 121 DMENDPAIVALIGCSAALTLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237
           GT++ VLMVE EA +LSE V+L A+ FGH   + VI+AI +LA+  AK P  +V  S + 
Sbjct: 181 GTEEGVLMVESEAAELSEKVMLGAVTFGHEAFQDVIDAIIELAEHAAKAPWDLVEPSAEE 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            KL +++ ++ ++ +  +     K VR K++   K  +++      +   +     + ++
Sbjct: 241 IKLRKKIEKLGRKAIAEAYQERVKQVRYKKVAAAKDAILAKLDPAEAEAAK----PLLKE 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L+   R+DGRD +T+R I ++VG+L R HGS+LF RG+TQA+V+ TLGT 
Sbjct: 297 LEANVVRSAVLETGHRIDGRDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIATLGTG 356

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   
Sbjct: 357 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKD 416

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ ++F +LS
Sbjct: 417 TFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEEEFAVLS 476

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI  I+  IM +AL QA+ GR+HIL EMSK
Sbjct: 477 DILGDEDHLGDMDFKVAGTENGITALQMDIKITSITPEIMEIALDQARGGRMHILGEMSK 536

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R  +    P++  +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT+ IA+
Sbjct: 537 ALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTIMIAA 596

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  + E A E IR I   PE+ KIY G+VVK  DFGAFV+F G RDGLVHIS+L+  RV
Sbjct: 597 SSDEQAEKAIERIRGIVAEPEIGKIYNGKVVKTADFGAFVNFLGPRDGLVHISELAQGRV 656

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT+DVVK+GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 657 AKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQETGADI 697


>gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum
           magneticum AMB-1]
 gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum
           magneticum AMB-1]
          Length = 720

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/707 (57%), Positives = 513/707 (72%), Gaps = 17/707 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+VH  EI W GR L LETG++ARQ+DGAV+ TYGET VL TVV  +S K G DFFPLT
Sbjct: 3   MFNVHRKEITWGGRKLVLETGKVARQADGAVMVTYGETSVLCTVVGAKSQKPGIDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF+  ++NE QV+  V+ H
Sbjct: 63  VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS 179
           DLE+ P + ++V  SAAL +SGLPF GPV  A+V Y++G YVLNP + D  +  LDL V+
Sbjct: 123 DLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVDGAYVLNPLVGDLPKSELDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA QLSEDV+L A++FGH E + VI+AI  LA+ CAK+P      D  +
Sbjct: 183 GTVEGVLMVESEAKQLSEDVMLGAVMFGHREFQAVIQAIIDLAEECAKDPW-----DLPE 237

Query: 240 LEEEMSQMIKE--DLRVSCFIPEKYVRCKQID------DLKKKMVSYFSSEHSSWNEGEI 291
              E++ +  +  D  V   + E Y   K+ D       +KKK ++  +        G  
Sbjct: 238 PPAEVAVVTGKFNDAGVPAELAEAYKIIKKQDRYAAVGAVKKKALALLTEAAEIAVAG-- 295

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             + + ++A VVR  +L   VR+DGRD++TVR I  +VG+L R HGS+LF RG+TQA+VV
Sbjct: 296 -GILKHLEADVVRGNILKTGVRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVV 354

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT +DEQ +D L+G  R  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+ P
Sbjct: 355 ATLGTGQDEQIIDQLAGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAMRP 414

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP    FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ KPVAGIAMGL+K+G 
Sbjct: 415 CLPAKESFPYTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLPKPVAGIAMGLIKEGT 474

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           DF +LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI  I+E IM +AL QAK GR+HI
Sbjct: 475 DFAVLSDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITSITEEIMKIALGQAKDGRIHI 534

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K L  +R  +    PR+  ++IP ++IR VIG GGKVIR I EQTGAK++IDDDG
Sbjct: 535 LGEMNKGLDHARDSVSGNAPRITTISIPKEKIREVIGTGGKVIREICEQTGAKIDIDDDG 594

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+K+AS      + A + IR I   PE+  IY G+VVKV+DFGAFV+F G+RDGLVHIS+
Sbjct: 595 TIKVASVDADAAQRAIDWIRGIVAEPELGVIYNGKVVKVVDFGAFVNFLGSRDGLVHISE 654

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           L+ ERVAKT+DVVK+GD V VK+L FDDRGK+KLSMK VDQ TG+ I
Sbjct: 655 LARERVAKTADVVKQGDVVKVKVLGFDDRGKVKLSMKQVDQTTGEDI 701


>gi|144899450|emb|CAM76314.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 721

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/702 (56%), Positives = 515/702 (73%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V   EI W GR L LE G+IARQ+DGAVLATYG+T VL TVV  ++ K G DFFPLT
Sbjct: 3   MFNVTRKEITWGGRKLVLEAGKIARQADGAVLATYGDTTVLCTVVGAKAPKPGIDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF   Y+NETQV+  V+ H
Sbjct: 63  VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVDGYRNETQVVCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MV ASAAL +SGLPF GP+  A+V YING+YVLNP   +  + +LDL V+
Sbjct: 123 DLENDPDIVAMVGASAALTISGLPFMGPIAAARVGYINGEYVLNPTTAQVKESALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237
           GT + VLMVE EA +LSED++L A++ GH E + VI+AI  +A+ CAKEP  + +   + 
Sbjct: 183 GTVEGVLMVESEAKELSEDIMLGAVMHGHREFQAVIQAIIDMAESCAKEPWDVPAPPAEV 242

Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           + +E + +   I  +L  +  I +K  R   +  +K K ++  +        G I   F+
Sbjct: 243 AVVEGKFAAAGIPAELAEAYKIVKKQDRYAAVGAVKVKALALLTEAAELAVAGPI---FK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A VVR  +L   +R+DGRD++TVR I +QVG+L R HGS+LF RG+TQA+VV TLGT
Sbjct: 300 HMEADVVRGNILKTGIRIDGRDTKTVRAIESQVGVLPRAHGSALFTRGETQALVVATLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RA+ P LP  
Sbjct: 360 GQDEQIIDALDGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPCLPTK 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PVAGIAMGL+K+   F +L
Sbjct: 420 ESFPYTIRVVSEITESNGSSSMATVCGSSLAMMDAGVPMPRPVAGIAMGLIKEDSGFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+TA+QMD+KI  I+E IM +AL QAK GRLHIL EMS
Sbjct: 480 SDILGDEDHLGDMDFKVAGTAEGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMS 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L  +R ++    PR+    IP ++IR VIG GGKVIR I E TGAK++IDDDGT+K+A
Sbjct: 540 KGLDSARTEVSGNAPRIITFNIPKEKIREVIGTGGKVIREICENTGAKIDIDDDGTIKVA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S      + A + IR I   PE+  +Y G+VVKV+DFGAFV+F G+RDGLVHIS++S +R
Sbjct: 600 SVDADAGQRAIDWIRGIVAEPELGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISEISRDR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DV+K+GD+V VK+L FDDRGK+KLSMK VDQ TG+ I
Sbjct: 660 VAKTADVLKQGDSVKVKVLGFDDRGKVKLSMKCVDQETGEDI 701


>gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium
           bathyomarinum JL354]
          Length = 769

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/703 (54%), Positives = 517/703 (73%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   + +K+GQDFFPLT
Sbjct: 1   MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKKVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+  A G+IPGG+ +RE+RPTE E L+SR+IDR +RPLF + + NE  VI  V+  
Sbjct: 61  VNYQEKFSAAGRIPGGFFKREARPTEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD---EDQGSLDLF 177
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V + NG+Y LNP      +D+G LDL 
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIASARVGFRNGEYELNPTQSAALDDEGRLDLV 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KD 236
           V+ T DAV+MVE EA +L+E+ +L A++F H+EC+ VI AI +LA+  AK+P  + S  D
Sbjct: 181 VAATNDAVMMVESEAKELTEEEMLGAVMFAHDECRKVIGAIIELAEQAAKDPWELASGDD 240

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVF 295
            + ++  + QMI +D+  +  + +K  R   +++ ++K+ +++SSE     +    + + 
Sbjct: 241 HADMKSAIKQMIGDDIAKAYKLTDKSARSDALNEAREKVKAHYSSEEFDGQQKMTAIKLV 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +++++VR  +L    R+DGR  + VR I A VGLL RTHGSSLF RG+TQAI   TLG
Sbjct: 301 KKLESEIVRGAILKDGQRIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T++ EQ +D L G   N FM+HYNF P + GEV R G   RREIGHG+LA RA+HPVLP 
Sbjct: 361 TKDAEQMIDGLEGLSYNHFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALHPVLPS 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R++S+ITES+GSSSMATVCG  L++MDAGVPI +PV+GIAMGL+ +GDDF +
Sbjct: 421 HEDFPYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG++SGIT++QMD+K+ GI++ IM  AL+QAK GR HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSESGITSLQMDIKVAGITQEIMAKALEQAKAGRAHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K L  +R  + +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI
Sbjct: 541 TKALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +SS+  EIEAAR+ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  E
Sbjct: 601 SSSNADEIEAARKWIEGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RV K +DVV EG  V VK+L+ D+RGK++LSM+VVDQ TG+ +
Sbjct: 661 RVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 703


>gi|294085143|ref|YP_003551903.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664718|gb|ADE39819.1| Polyribonucleotide nucleotidyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 709

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/701 (55%), Positives = 516/701 (73%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +   E++W G PL LE+G++ARQ+DGAV+ T GET VL T V  +  K GQDFFPLT
Sbjct: 1   MFKIFRKELDWGGTPLVLESGKVARQADGAVMVTLGETTVLCTAVAAQQAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+ENE L+ R+IDR IRPLF K +K ETQVI  V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPSENETLVCRLIDRPIRPLFPKSFKCETQVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E++P + +M+ ASAAL LSG+PF GP+ GA++ +IN +YVLNP +++ D+  LDL ++
Sbjct: 121 DMENNPDIAAMIGASAALTLSGVPFFGPIAGARIGWINDEYVLNPTVEQMDESDLDLVMA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA +LSE+V+L A+ FGH+  KPVIEAI  LA+ CAKEP     +D  +
Sbjct: 181 GTMEGVLMVESEAQELSEEVMLGAVNFGHDAIKPVIEAIIDLAESCAKEP-----RDLPE 235

Query: 240 LEEE---MSQMIKE---DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
              E   +S ++KE       +  I +K  R   +  ++ +       ++ +   G ++ 
Sbjct: 236 EPAETSTISDILKEFEGAFEAAYKIADKAERQAAVGAVRSEAKDKIGDDYDAVLVGGLI- 294

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A VVR  +L   VR+DGRD++TVR I ++ G L R HGS+LF RG+TQA+VV T
Sbjct: 295 --KGLEADVVRGAILKTGVRIDGRDTKTVRAIVSEAGFLPRAHGSALFTRGETQAMVVAT 352

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +DSL G  R++FM+HYNF P + GE  R+G+P RREIGHG+LA RAI P++
Sbjct: 353 LGTGQDEQIIDSLVGEGRSNFMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRAIRPLM 412

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+VSEITES+GSSSMATVCG SLALMD+GVP+++PVAGIAMGL+K+GDDF
Sbjct: 413 PSKEEFPYTVRLVSEITESNGSSSMATVCGGSLALMDSGVPLARPVAGIAMGLIKEGDDF 472

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAG+D+GIT++QMD+KI  I+  IM +AL QA+ GR+HIL 
Sbjct: 473 AVLSDILGDEDHLGDMDFKVAGSDAGITSLQMDIKITSITPEIMQIALDQARDGRIHILG 532

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+K L+ +R  L +  P++  + IP D+IR++IG GGK+IR I E TGAK++I+DDGTV
Sbjct: 533 EMAKALTSAREVLADSAPKITTLNIPVDKIRDIIGPGGKIIREICETTGAKIDIEDDGTV 592

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K+A+ + A  EAA   IR I   PE+  IY G+VVK +DFGAFV+F GA+DGLVHIS+L 
Sbjct: 593 KVAAVTGASGEAAVARIRDIVAEPELGVIYDGKVVKTVDFGAFVNFLGAKDGLVHISELQ 652

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             R  KT+D+ KEGDTV VK++ FDDRGK+KLSMK VDQ T
Sbjct: 653 NGRTEKTTDICKEGDTVKVKVIGFDDRGKVKLSMKRVDQET 693


>gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium
           ATCC 15444]
 gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium
           ATCC 15444]
          Length = 713

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/702 (54%), Positives = 518/702 (73%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +V +EWAGR L +ETG++ARQ+DGAV+  YG+T+VLAT V+ +  K GQDFFPLT
Sbjct: 1   MFNKQSVSLEWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGG+ +RE RPTE E L SR+IDR IRPLF   +K+E QV++  + +
Sbjct: 61  VNYQEKYFASGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+   ++++V ASAAL+LSG PF GP+  A+V Y +GQY++NP + E ++  LDL V+
Sbjct: 121 DLENDADIIALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE +A +LSEDV+L A++ GH+  +PVI+AI  LA+  AKEP   +  D S 
Sbjct: 181 GTTDAVMMVESQAAELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAKEPFAYEPPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIV-SVFE 296
             + +   +  DL  +  I  K  R   I   K K  +    + E       E+  +VF+
Sbjct: 241 ALKSVIDTVGADLSKAYKITAKGERYAAIGAAKDKAKAALLGTDEAPGVMTPEVFKTVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A VVR  +L    R+DGR  + +R I A+ G L RTHGSSLF RG+TQAI V TLGT
Sbjct: 301 EAEASVVRGDILKTGQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQY+D L GT++  FM+HYNF P + GE  RMG   RREIGHG+LA RA+  VLP+ 
Sbjct: 361 SDDEQYIDGLDGTKKEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKH 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG SLA+MDAGVP+++PV+GIAMGL+ +G +F +L
Sbjct: 421 EDFPYTIRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++G+T++QMD+K+ GI+++IM  AL+QAK GR+HIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQAKGGRMHILGEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ SR QL E  P++EI+ +P D+IR+VIG GGKVIRGIV++TGAKVNIDDDGTV+I+
Sbjct: 541 KALTASRGQLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAKVNIDDDGTVQIS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I+AA +MI+ IT   EV +IY+G+VV + DFG FV+F G +DGLVH+SQ++ +R
Sbjct: 601 AMDRKSIDAAIKMIKGITAEAEVGEIYEGKVVSMKDFGIFVNFFGPKDGLVHVSQMANKR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +    ++VKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +
Sbjct: 661 IGHPKEMVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKEL 702


>gi|258543487|ref|YP_003188920.1| polynucleotide phosphorylase/polyadenylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634565|dbj|BAI00541.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637623|dbj|BAI03592.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640675|dbj|BAI06637.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643732|dbj|BAI09687.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646787|dbj|BAI12735.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649840|dbj|BAI15781.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652828|dbj|BAI18762.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655884|dbj|BAI21811.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 716

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/701 (55%), Positives = 524/701 (74%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    EIEW GRPL LETG++ARQ+DGAV+ TYGETVVL T V  + +K GQDFFPLT
Sbjct: 1   MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+ENE L+SR+IDR +RPLF + ++NE QVI  V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P + +++  SAAL LSG+PF GPV  A+V + +G ++LNP  ++  +  L+L V+
Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDF 237
           GT + VLMVE EA++LSE+V+LDA+ FGH   +PV++AI  LA+  AKEP  +   +K+ 
Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L +++ +  ++ +  +    +K VR +++   ++ ++   +++       +   + +D
Sbjct: 241 IQLRKQVEKAGRKLIADAYKEKQKQVRYEKLKAAREAIIEKLTADELDVAAAK--PMIKD 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L    R+DGRD  TVR I  +VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 299 LEADVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTG 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP++P   
Sbjct: 359 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIHPLMPSRK 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVP+ +PVAGIAMGL+K+GDDF +LS
Sbjct: 419 EFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+  IM +AL QA+ GR+HIL EMSK
Sbjct: 479 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E+R  +    P++  M +P ++IR+VIG GGKVIR IVE +GAKV+I DDGT+ IA+
Sbjct: 539 ALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTITIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A + I  I   PE+ +IY G+VVK  DFGAFV+F GARDGLVHIS+L+  RV
Sbjct: 599 ASDDQAQKAIDRINGIVAEPELGRIYDGKVVKTADFGAFVNFLGARDGLVHISELAQGRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGDTV VK++ FDDRGK+KLSM+VVDQNTG  I
Sbjct: 659 GKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699


>gi|329113570|ref|ZP_08242350.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
           DM001]
 gi|326697092|gb|EGE48753.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
           DM001]
          Length = 716

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/701 (55%), Positives = 523/701 (74%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    EIEW GRPL LETG++ARQ+DGAV+ TYGETVVL T V  + +K GQDFFPLT
Sbjct: 1   MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKEVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+ENE L+SR+IDR +RPLF + ++NE QVI  V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P + +++  SAAL LSG+PF GPV  A+V + +G ++LNP  ++  +  L+L V+
Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDF 237
           GT + VLMVE EA++LSE+V+LDA+ FGH   +PV++AI  LA+  AKEP  +   +K+ 
Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L +++ +  ++ +  +    +K VR +++   +  +V   +++       +   + +D
Sbjct: 241 IQLRKQVEKAGRKLIADAYKEKQKQVRYEKLKAARAAIVEKLTADELDVAAAK--PMIKD 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L    R+DGRD  TVR I  +VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 299 LEADVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTG 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP++P   
Sbjct: 359 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIHPLMPSRK 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVP+ +PVAGIAMGL+K+GDDF +LS
Sbjct: 419 EFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+  IM +AL QA+ GR+HIL EMSK
Sbjct: 479 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E+R  +    P++  M +P ++IR+VIG GGKVIR IVE +GAKV+I DDGT+ IA+
Sbjct: 539 ALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTITIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A + I  I   PE+ +IY G+VVK  DFGAFV+F GARDGLVHIS+L+  RV
Sbjct: 599 ASDDQAQKAIDRINGIVAEPELGRIYDGKVVKTADFGAFVNFLGARDGLVHISELAQGRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGDTV VK++ FDDRGK+KLSM+VVDQNTG  I
Sbjct: 659 GKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699


>gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae
           DFL 12]
 gi|187610298|sp|A8LKE7|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae
           DFL 12]
          Length = 711

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/707 (55%), Positives = 510/707 (72%), Gaps = 12/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +EW    L LETG+IARQ+DG V+ATYGET V+A V Y RS K GQDFFPLT
Sbjct: 1   MFNQVKKTMEWGEDTLTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GKIPGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  VI  V+ H
Sbjct: 61  VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DLE+ P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+YVLNP +D+        DQ 
Sbjct: 121 DLENDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +LSE  +L A+ FGH + +PVI+ I +LA+  AKEP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAKEPFDF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              D+S+L  ++    ++ +R +  I +K  R   I   +  +++  S E  +  +  + 
Sbjct: 240 QPADYSELYAKVKAAGEDQMRAAFAITDKQERVTAISAARDAILATLSDEEQT--DPNLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + +++ ++R  ++    R+DGR  +TVR I ++VG+L RTHGS+LF RG+TQ +VV 
Sbjct: 298 SALKKLESSILRGDVVKNGRRIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ++D+L G  +++F++HYNF P + GEV R G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D 
Sbjct: 418 LPAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL+QAK GRLHI
Sbjct: 478 SYAVLTDILGDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITPEIMEKALEQAKAGRLHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LSE R Q  E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMSKALSEGRSQFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 597

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS++   I+ A EMI SI   PE  K+Y G VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 598 IIKIASANGEAIKKAYEMIHSIVAEPEEGKVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQ 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +   R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I
Sbjct: 658 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 704


>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
           RW1]
 gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
           RW1]
          Length = 774

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/700 (53%), Positives = 508/700 (72%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   VEI+W G+ L LETGR+ARQ+DGAVLAT GETVVL  V   RS+K+GQDFFPLT
Sbjct: 1   MFDTKKVEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ ++ G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179
           D E+ P +++M+AASAAL +SG+PF GP+  A+V Y +G+Y+LNP   D   G LDL V+
Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
            T DAV+MVE EA +LSE+V+L A++F H   + VI+AI KLA+  AK+P  +  + D S
Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASQDVIKAIIKLAEKSAKDPWEMAPQADLS 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
             + ++ +++ +D+  +  +  K  R   +++ + K    F+ + +  ++   + + + +
Sbjct: 241 AAKTKLKKLVGKDITAAYKLTNKSARSSALNEARAKAKEAFA-DATPQDQMAAIKLVKKL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VRT +L    R+DGRD+ TVR I A+   L R HGS+LF RG+TQ+I   TLGT+E
Sbjct: 300 EAEIVRTAILKDGRRIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKE 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D L+G +   FM+HYNF P + GEV R GAP RRE+GHG+LA RA+H VLP   +
Sbjct: 360 SEQMIDGLNGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+ S+ITES+GSSSMATVCG SLA+MDAGVPI +PV+GIAMGL+ +G DF ++SD
Sbjct: 420 FPYTIRLTSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAVISD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT MQMD+KI GI+E I   AL QAK GR HIL EM+K 
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  +R +L    PR+E M++P D+IR++IG GGK+IR IV  TGAKV+IDDDGTVKI+SS
Sbjct: 540 LDHTRTELSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDIDDDGTVKISSS 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+IEAAR  I  I   PEV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV 
Sbjct: 600 DTAQIEAARNWIIGIVAEPEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K +D + EG  V VK+L+ D+RGK++LSM+VVDQ TG+ +
Sbjct: 660 KVADALSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 699


>gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase/polyadenylase [Granulibacter
           bethesdensis CGDNIH1]
 gi|122326039|sp|Q0BPK3|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 720

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/701 (54%), Positives = 513/701 (73%), Gaps = 4/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E++  GR L LETG+IARQ+DGAVLA  G+T+VL T V  +S K GQDFFPLT
Sbjct: 1   MFNYFRKELDLGGRTLVLETGKIARQADGAVLARLGDTIVLCTAVGAKSAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E+E L+SR+IDR IRPLF + + NE QVI  V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+++  SAAL LSG+PF GPV  ++V  +NG +VLNP L++  +  LDL V+
Sbjct: 121 DMENDPDIVALIGCSAALTLSGIPFFGPVAASRVGLVNGAFVLNPTLEQRAESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--F 237
           GT + VLMVE EA +LSED +L A+ FGH   +PVI+AI  LA+  A++P  +  ++   
Sbjct: 181 GTAEGVLMVESEAEELSEDQMLAAVEFGHKGFQPVIDAIIALAEHAARDPWTLPEQNPEH 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L++ +++  +  L  +     K +R ++I   KK+++        +  E    S+ +D
Sbjct: 241 VALKQRLNEAGRTLLGNAYQEKVKQLRQEKISAAKKQIIETLGI-GGTPEESIAKSMLKD 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A +VR  +LD  +R+DGRD+ TVR I  +VG+L R HGS+LF RG+TQA+ V TLGT 
Sbjct: 300 LEADIVRNAILDTGIRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALCVATLGTG 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ VD+L+G  R+ FM+HYNF P + GE  RMG+P RREIGHG+LA RA+HPVLP   
Sbjct: 360 QDEQVVDALTGEYRSHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPVLPAKD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+K+   F +LS
Sbjct: 420 AFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIKEDRAFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI  I+  IM +ALQQA+ GR+HIL EM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGTEQGVTSLQMDIKITSITTEIMRIALQQARDGRMHILGEMAK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R  +    PR+ ++ +P ++IR VIG GGKVIR IVE +GAK++I+DDGT+KIAS
Sbjct: 540 AITGARGSVAATAPRITVINVPKEKIREVIGTGGKVIREIVEFSGAKIDIEDDGTIKIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S    + A + I+ I   PEV KIY G+VVK  DFGAFV+F G+RDGLVHIS+L   RV
Sbjct: 600 TSEESTQKAIDRIQGIVAEPEVGKIYNGKVVKTADFGAFVNFLGSRDGLVHISELQQGRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDV+  GD V VK+L FDDRGK+KLSM++VDQ TG+ I
Sbjct: 660 NKTSDVINVGDVVKVKVLGFDDRGKVKLSMRLVDQTTGEDI 700


>gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
 gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
          Length = 763

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/702 (54%), Positives = 510/702 (72%), Gaps = 5/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV IEW G+ L LETG+IARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDKKTVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE R TE E L SR+IDR +RPLF + + NE  VI  V+  
Sbjct: 61  VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD---EDQGSLDLF 177
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V + NG+Y LNP L    +++G LDL 
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFRNGEYELNPSLANALDEEGRLDLV 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKD 236
           V+ TQDAV+MVE EA +L+E+ +L A+ F H+E + V+ AI  LA+  AK+P  I+ + D
Sbjct: 181 VAATQDAVMMVESEAKELTEEEMLGAVAFAHDEARKVVGAIVDLAEQAAKDPWEIERADD 240

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            S +++E+  +I +D+  +  I +K  R  +ID  + K+ + +  E     +     + +
Sbjct: 241 LSGMKDEIRGLIGDDIAAAYKITDKSERRDRIDAARDKVKAKYEDEDGQ-TQSAANKIIK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +++++VR  +L    R+DGR  + VR I A VGLL RTHGS+LF RG+TQAI   TLGT
Sbjct: 300 KLESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ++ EQ +D L G   N+FM+HYNF P + GEV R G  SRRE GHG+LA RA+HPVLP  
Sbjct: 360 KDAEQMIDGLEGLSYNNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPDH 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RI+S+ITES+GSSSMATVCG  L++MDAGVPI +PV+GIAMGL+ +G+DF +L
Sbjct: 420 EDFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAG+++GIT MQMD+K+ GI++ IM  AL+QAK GR HIL EM+
Sbjct: 480 SDILGDEDHLGDMDFKVAGSEAGITTMQMDIKVAGITQEIMAKALEQAKAGRQHILGEMA 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L  +R  + +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+
Sbjct: 540 KALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKIS 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAAR+ I  I +  EV K+Y G+VV ++DFGAFV+F G +DGLVH+S++  ER
Sbjct: 600 SSNADEIEAARKWIEGIVEEAEVGKVYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 660 VEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEEL 701


>gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
 gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
          Length = 778

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/701 (54%), Positives = 516/701 (73%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IE AG+ L LETGRIARQ+D AVLATYGETVVL  V   +S+KDGQDFFPLT
Sbjct: 8   MFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKDGQDFFPLT 67

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+  
Sbjct: 68  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF 127

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ES P +V+M+AASAAL LSG+PF GP+  A+V Y +G+Y LNP L+E  +G LDL V+
Sbjct: 128 DGESEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDLDLVVA 187

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
            T +AV+MVE EA +LSEDV+L A++F H+  K V+ AI  LA+  AK+P  + ++D   
Sbjct: 188 ATGNAVMMVESEAKELSEDVMLGAVMFAHDAAKKVVNAIIDLAEQAAKDPWEMAAQDDLG 247

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFED 297
            L+++++++I +D+  +  + +K  R   +++ + K  ++F+ E   +      + + + 
Sbjct: 248 GLKKKLTKLIGKDIAAAYKLTDKSARSNALNEARAKAKAFFAEEELDAQTVMAGIKLTKK 307

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VRT +L    R+DGR +  +R I A VG L RTHGS+LF RG+TQAI   TLGT+
Sbjct: 308 LEAEIVRTAILKDGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK 367

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L+G    +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 368 DAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD 427

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G D+ ++S
Sbjct: 428 EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAVIS 487

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I  +AL+QAK GR HIL EMSK
Sbjct: 488 DILGDEDHLGDMDFKVAGTENGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK 547

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS +R +L    PR+E + I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+S
Sbjct: 548 ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A+IEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 608 SDTAQIEAAKKWILGIVEEAEVGKIYSGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 667

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 668 EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 708


>gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 772

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/698 (54%), Positives = 504/698 (72%), Gaps = 4/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR +RPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--QGSLDLFV 178
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V +I G+YVLNP+ D     G LDL V
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIAAARVGFIEGEYVLNPKQDVALADGRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDF 237
           + T  AV+MVE EA +LSED +L A++F H+E K VI AI +LA+  AK+P  ID S + 
Sbjct: 181 AATDTAVMMVESEAKELSEDEMLGAVLFAHDEIKKVIGAIIQLAEKAAKDPWDIDLSDNT 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + +++++  ++ +D+  +  + +K  R   ++   +       +E  +  +   +   + 
Sbjct: 241 ADIKKKLKDLVGKDVAAAYKLTDKSARSNALN-EARAKAKAAFAEEGAQTQMVAMKTMKK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A +VR  +L    R+DGR +  VR I A VG L RTHGSSLF RG+TQAI   TLGT+
Sbjct: 300 VEADIVRGAILKDGQRIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTK 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L G +  +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 360 DAEQMIDGLEGLRYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+RI+S+ITES+GSSSMATVCG  L++MDAGVP+ +PV+GIAMGL+ +GD F +LS
Sbjct: 420 EFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT MQMD+K+ GI+  I  +AL+QA  GR HIL EM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L E+R +L    PR+E + I   +IR+VIG GGKVIR IV  TGAKV+IDD+G +KI+S
Sbjct: 540 ALGEARTELSAHAPRIETLQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S L +IEAA+  I  I +  EV KIYKG+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 600 SDLTQIEAAKNWILGIVEEAEVGKIYKGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            K +DVVKEG  V+VK+L+ D RGK++LSM+VVDQ TG
Sbjct: 660 EKPTDVVKEGQDVYVKVLEIDQRGKVRLSMRVVDQETG 697


>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
           RB2256]
 gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
          Length = 771

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/701 (54%), Positives = 504/701 (71%), Gaps = 9/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IEW G  L LETG++ARQ+DGAV+AT GETVVL  V   +S+KDGQDFFPLT
Sbjct: 1   MFDVKKVSIEWGGETLTLETGKVARQADGAVIATLGETVVLCAVTAAKSVKDGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE   I  V+ +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--QGSLDLFV 178
           D  + P +++MVAASAAL +SG+PF GP+  A+V Y+NG+Y+LNP  DE   +G LDL V
Sbjct: 121 DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNP-TDEQVAEGDLDLVV 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           + T DAV+MVE EAN+LSE+V+L A++F H+ CK V++AI KLA+  AKEP  I  S D 
Sbjct: 180 AATHDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIIKLAEQAAKEPWEIASSDDD 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---SSWNEGEIVSV 294
           + L++++ ++I +D+  +  + +K  R   +++ + K    F ++     +   G  + +
Sbjct: 240 AALKDKLRKLIGKDIAAAYKLTDKSARSNALNEARAKAKESFIADGLDPQAVMAG--IKI 297

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            + ++A++VRT +L +  R+DGR +  +R I A+   L R HGS+LF RG+TQ I   TL
Sbjct: 298 VKKLEAEIVRTAILKEGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTL 357

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT++ EQ +D L+G     FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP
Sbjct: 358 GTKDAEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLP 417

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+ S+ITES+GSSSMA+VCG SLA+MDAGVPI +PV+GIAMGL+ +G D+ 
Sbjct: 418 SKDEFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYA 477

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKVAGT  GIT MQMD+KI GI+  I   AL QAK GR HIL E
Sbjct: 478 ILSDILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALAQAKEGRAHILGE 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K L E R +L    PR+E M I   +IR+VIG GGKVIR IV  TGAKV+IDD+G +K
Sbjct: 538 MNKALGEVRTELSAHAPRIETMQIDKAKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIK 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I+SS L +IEAAR+ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  
Sbjct: 598 ISSSDLDQIEAARKWIAGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIRN 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ERV K +DV+ EG  V VK+L+ D RGK++LSM+VVDQ TG
Sbjct: 658 ERVEKVADVLSEGQDVKVKVLEIDPRGKVRLSMRVVDQETG 698


>gi|241761092|ref|ZP_04759181.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374711|gb|EER64172.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 748

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/696 (55%), Positives = 513/696 (73%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+   EI+W G+ L LETG++ARQ+DGAV+AT GETVVL  V   +++K+GQDFFPLT
Sbjct: 1   MFDIKRQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E LISR+IDR IRPLF + + NET VI  VM +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +++M+AASAAL LSG+PF GP+  A+V Y +G+++LNP L++ ++  LDL V 
Sbjct: 121 DGENEPDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+DAV+MVE EAN+L E+V+L+A+ F H   +PVI+AI  LA+  AKEP  + S D S 
Sbjct: 181 ATRDAVMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWELVSYDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++  ++   +  +  K  R + +   K  +   F  E     +  I  + + ++
Sbjct: 241 LAAKVEELCYDNFDKAYRLTRKAERVEALSKAKAVLDEAFP-EADPTEKLRIQKLAKKLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           AK+VRT +L +  R+DGRD +TVR I +QVG L RTHGS+LF RG+TQA+V  TLGT + 
Sbjct: 300 AKIVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADA 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L+G     FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP  A F
Sbjct: 360 EQMIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R++S+ITES+GSSSMATVCG  LALMDAGVP+++PV+GIAMGL+ + D F ILSDI
Sbjct: 420 PYTIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM  AL+QAK GR HIL EMSK L
Sbjct: 480 MGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKAL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R ++    PR+E M++P D+IR+VIG GGKVIR IV  TGAKV+I+DDGTV+++SS 
Sbjct: 540 GEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVRLSSSD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A IEAARE I  I + PEV KIY G+VV ++DFGAFV+F G RDGLVH+S++  ERV K
Sbjct: 600 PANIEAAREWINGIVEEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            SDV+ EG  V VK+L+ D+RGK++LSM+VVDQ TG
Sbjct: 660 VSDVLSEGQEVKVKVLEIDNRGKVRLSMRVVDQETG 695


>gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|81355362|sp|Q5NQ32|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 748

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/696 (55%), Positives = 512/696 (73%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+   EI+W G+ L LETG++ARQ+DGAV+AT GETVVL  V   +++K+GQDFFPLT
Sbjct: 1   MFDIKRQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E LISR+IDR IRPLF + + NET VI  VM +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +++M+AASAAL LSG+PF GP+  A+V Y +G+++LNP L++ ++  LDL V 
Sbjct: 121 DGENEPDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+DAV+MVE EAN+L E+V+L+A+ F H   +PVI+AI  LA+  AKEP  + S D S 
Sbjct: 181 ATRDAVMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWELVSYDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++  ++   +  +  K  R   +   K  +   F  E     +  I  + + ++
Sbjct: 241 LAAKVEELCYDNFDKAYRLTRKAERVDALSKAKAVLDEAFP-EADPTEKLRIQKLAKKLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           AK+VRT +L +  R+DGRD +TVR I +QVG L RTHGS+LF RG+TQA+V  TLGT + 
Sbjct: 300 AKIVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADA 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L+G     FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP  A F
Sbjct: 360 EQMIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R++S+ITES+GSSSMATVCG  LALMDAGVP+++PV+GIAMGL+ + D F ILSDI
Sbjct: 420 PYTIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM  AL+QAK GR HIL EMSK L
Sbjct: 480 MGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKAL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R ++    PR+E M++P D+IR+VIG GGKVIR IV  TGAKV+I+DDGTV+++SS 
Sbjct: 540 GEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVRLSSSD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A IEAARE I  I + PEV KIY G+VV ++DFGAFV+F G RDGLVH+S++  ERV K
Sbjct: 600 PANIEAAREWINGIVEEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            SDV+ EG  V VK+L+ D+RGK++LSM+VVDQ TG
Sbjct: 660 VSDVLSEGQEVKVKVLEIDNRGKVRLSMRVVDQETG 695


>gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
           ATCC 11170]
 gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 708

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/698 (55%), Positives = 511/698 (73%), Gaps = 6/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+V   EIEW GR L LETGRIARQ+DGAV+A+ G+T VL T V  ++ K   DFFPLT
Sbjct: 3   LFNVFRKEIEWGGRKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKT-KSKFDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF   YKNETQ++  V+ H
Sbjct: 62  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLCH 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE++P +V++V ASAAL LSGLPF GP+  A+V  I+G +VLNP  D+   S LDL V+
Sbjct: 122 DLENNPDIVAIVGASAALTLSGLPFLGPIGAARVGLIDGAFVLNPTRDQMADSVLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237
           GT++ VLMVE EA++LSE  +LDA++FGH   +PVI+AI  LA+ CA+EP  I   + + 
Sbjct: 182 GTREGVLMVESEAHELSEQQMLDAVMFGHEGYQPVIDAIIALAEQCAREPRAIEPPAPEA 241

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             +  ++ ++ +  LR +    +K VR  ++D ++  + + F+ + ++       + F+D
Sbjct: 242 EAVAAKVREVGEAGLRDAYKEADKMVRHDKVDAVRDAVTAAFAGDDAALAL--AGAAFKD 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  +VR  +LD  +R+DGRD++TVR I    G+L R HGS+LF RG+TQA+V  TLGT 
Sbjct: 300 LEKDIVRGSILDTGLRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTG 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP++P   
Sbjct: 360 QDEQIIDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMMPAKD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+   VAGIAMGL+K+ + F +LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKNAVAGIAMGLIKEDERFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GIT++QMD+KI  I++ IM +AL QAK GR+HIL EM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGTANGITSLQMDIKITSITKEIMNVALNQAKDGRIHILGEMTK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R  + +F PR+  + +PP ++R VIG GGKVIR I E TG K++I+DDGT+KIAS
Sbjct: 540 ALGNARSDVSDFAPRITTIKVPPQKVREVIGSGGKVIREITEVTGTKIDIEDDGTIKIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A + I+ I   PE+  +Y G+VVK+MDFGAFV+F G RDGLVHIS+LS +RV
Sbjct: 600 ADAEATQRAVDWIKGIVAEPEIGVVYTGKVVKIMDFGAFVNFLGTRDGLVHISELSQDRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            K  DVV  GD V VK + FDDRGKIKLSMK VDQ TG
Sbjct: 660 KKVGDVVNVGDQVKVKCVGFDDRGKIKLSMKQVDQVTG 697


>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
 gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
          Length = 716

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/706 (53%), Positives = 514/706 (72%), Gaps = 17/706 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    ++W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNISKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V + +G+YVLNP +D+ QG        
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S+L E +    +E +R +  I +K  R   +  +K+++    S E     +  + S
Sbjct: 241 APDYSELFEVVKGFGEEKMRAAYAISDKQERVAAVSAVKEEIKGQLSEEQ--LEDANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++  K R+DGR  + VR I ++  +L RTHGSSLF RG+TQA+VV T
Sbjct: 299 ALKKLESNVLRADVVKNKRRIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV +DG +
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDGGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            EM+K L+E+    GEF+   PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D
Sbjct: 539 AEMAKALTEA----GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIND 594

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG +KIAS++   I+ A +MI SI   PE   +YKG+VVK++DFGAFV+F G RDGLVH+
Sbjct: 595 DGVIKIASANGEAIQKAYDMIYSIVAEPEEGHVYKGKVVKIVDFGAFVNFFGKRDGLVHV 654

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SQ+   R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG
Sbjct: 655 SQIENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 700


>gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
 gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
          Length = 762

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/706 (53%), Positives = 512/706 (72%), Gaps = 9/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE R TE E L SR+IDR  RPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPCRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPR----LDEDQGSLD 175
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V + N G+YVLNP     L ED G LD
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGED-GRLD 179

Query: 176 LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS- 234
           L V+ TQDAV+MVE EA +L+E+ +L A++F H E + VI AI +LA+  AK P  +D  
Sbjct: 180 LVVAATQDAVMMVESEAKELTEEEMLGAVMFAHEESRKVIGAIIELAEQAAKAPWELDPV 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIV 292
           +D S   +++   I  DL  +  I +K  R   ++  ++K    F+  +E         +
Sbjct: 240 EDKSAKMDKLRAAIGSDLEAAYKITDKSARQDAVNAAREKAREAFADLAESDPAEYLGTL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            + + +++++VR  +L    R+DGR  + VR I A VGLL RTHGS+LF RG+TQAI   
Sbjct: 300 KLVKKLESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT++ EQ +D L G   ++FM+HYNF P + GEV R G  SRRE GHG+LA RA+ PV
Sbjct: 360 TLGTKDAEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPYT+R++S+ITES+GSSSMATVCG +L++MDAGVP+++PV+GIAMGL+ +G+D
Sbjct: 420 LPDAEEFPYTIRVLSDITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGED 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +LSDI GDEDHLG MDFKVAG++ GIT++QMD+K+ GI++ IM  AL+QAK GR HIL
Sbjct: 480 FAVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTQALEQAKAGRAHIL 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+ +R ++ +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+GT
Sbjct: 540 GEMAKALTGARTEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KI+SS+  EIEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++
Sbjct: 600 IKISSSNADEIEAAKKWIEGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSEM 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             ERV K +DVV EG  V VK+L+ D+RGK++LSM+VVDQ TG+ +
Sbjct: 660 KNERVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 705


>gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis
           HTCC2594]
 gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis
           HTCC2594]
          Length = 769

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/707 (54%), Positives = 513/707 (72%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV IEW G+ L LETG+IARQ+DGAVLATYGETVVL  V   RS+K+GQDFFPLT
Sbjct: 1   MFDKKTVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAARSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE R TE E L SR+IDR +RPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPR----LDEDQGSLD 175
           D E+ P +V+M+AASAAL +SGLPF GP+  A+V + N G+YVLNP     L ED G+LD
Sbjct: 121 DGETEPDIVAMIAASAALTISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGED-GNLD 179

Query: 176 LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS- 234
           L V+ TQDAV+MVE EA +L+E+ +L A++F H E + VI AI  LA+  AK+P  +D  
Sbjct: 180 LVVAATQDAVMMVESEAKELTEEQMLGAVMFAHEESRKVIGAIIDLAEQAAKDPWELDPV 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNE--GEI 291
           +D S   E++  +I +DL  +  I  K  R   ++  + K   ++S  E S   E  G +
Sbjct: 240 EDKSAALEKLRGVIGDDLAKAYKITNKAQRQDAVNAARTKAREHYSDLEESDPAEYMGRL 299

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             + + +++ +VR  +L    R+DGR ++ VR I A VGLL RTHGS+LF RG+TQAI  
Sbjct: 300 -KLVKKLESDIVRKAILKDGQRIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICT 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT++ EQ +D L G   ++FM+HYNF P + GEV R G  SRRE GHG+LA RA+ P
Sbjct: 359 TTLGTKDSEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRP 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +GD
Sbjct: 419 VLPDNEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGD 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           DF +LSDI GDEDHLG MDFKVAG++ GIT++QMD+K+ GI++ IM  AL+QAK GR HI
Sbjct: 479 DFTVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTKALEQAKAGRAHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M++ L  SR ++ +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+G
Sbjct: 539 LGKMTEALGSSRGEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KI+SS+  EIEAAR+ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S+
Sbjct: 599 VIKISSSNADEIEAARKWIEGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +  ERV K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 659 MKNERVEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEEL 705


>gi|187610326|sp|A1B5P9|PNP_PARDP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 715

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/707 (54%), Positives = 512/707 (72%), Gaps = 12/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD     I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFDEVKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RP+E E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172
           DL + P +V+M+AASAAL +SG+PF GP+  A+V + +G+YVLNP        RL+ +Q 
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+E  +L A+ FGH   +PVI+ I  LA+  AKEP   
Sbjct: 180 RLDLVVAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAKEPFEF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            S D+S L   +  + + D+R +  I +K  R   I+  K K+++  S E     +  + 
Sbjct: 240 ASPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEEE--LLDPNLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + +++ ++R  ++D + R+DGRD++TVR I  +VG L RTHGSSLF RG+TQA+VV 
Sbjct: 298 SALKKLESGILRGGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D 
Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 477

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHI
Sbjct: 478 RWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LSE R +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I DDG
Sbjct: 538 LGEMSKALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAKVDISDDG 597

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+KIAS++   I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 598 TIKIASANADSIKKAYDMIYSIVAEPEEGKIYVGKVVKLVDFGAFVNFFGKRDGLVHVSQ 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++ +R+   ++V+KEG  V VKLL FDDRGK++L MK+VDQ TG+ I
Sbjct: 658 IAGKRLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEI 704


>gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase/polyadenylase [Paracoccus
           denitrificans PD1222]
 gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222]
          Length = 736

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/708 (53%), Positives = 512/708 (72%), Gaps = 12/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD     I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 22  MFDEVKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 81

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RP+E E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 82  VHYQEKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 141

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172
           DL + P +V+M+AASAAL +SG+PF GP+  A+V + +G+YVLNP        RL+ +Q 
Sbjct: 142 DLVNDPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQ- 200

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+E  +L A+ FGH   +PVI+ I  LA+  AKEP   
Sbjct: 201 RLDLVVAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAKEPFEF 260

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            S D+S L   +  + + D+R +  I +K  R   I+  K K+++  S E     +  + 
Sbjct: 261 ASPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEEE--LLDPNLG 318

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + +++ ++R  ++D + R+DGRD++TVR I  +VG L RTHGSSLF RG+TQA+VV 
Sbjct: 319 SALKKLESGILRGGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVT 378

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  V
Sbjct: 379 TLGTGDDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 438

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D 
Sbjct: 439 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 498

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHI
Sbjct: 499 RWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHI 558

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LSE R +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I DDG
Sbjct: 559 LGEMSKALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAKVDISDDG 618

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+KIAS++   I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 619 TIKIASANADSIKKAYDMIYSIVAEPEEGKIYVGKVVKLVDFGAFVNFFGKRDGLVHVSQ 678

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++ +R+   ++V+KEG  V VKLL FDDRGK++L MK+VDQ TG+ I 
Sbjct: 679 IAGKRLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEIA 726


>gi|187611319|sp|A4WWP0|PNP_RHOS5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 714

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/707 (53%), Positives = 510/707 (72%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V Y NG+YVLNP +D+ Q         
Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  AKEP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAKEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S +E +  N G   
Sbjct: 241 PPDYAALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLSDAELADENLG--- 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV 
Sbjct: 298 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HI
Sbjct: 478 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++ +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I
Sbjct: 657 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703


>gi|146278950|ref|YP_001169109.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145557191|gb|ABP71804.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 740

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/708 (52%), Positives = 510/708 (72%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 27  MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 86

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 87  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 146

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V Y NG+YVLNP +D+ Q         
Sbjct: 147 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 206

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  AKEP    
Sbjct: 207 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAKEPFDFS 266

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S +E +  N G   
Sbjct: 267 PPDYAALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLSDAELADENLG--- 323

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV 
Sbjct: 324 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 383

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  V
Sbjct: 384 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 443

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 444 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 503

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HI
Sbjct: 504 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHI 563

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 564 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 622

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 623 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 682

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++ +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I 
Sbjct: 683 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIA 730


>gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 763

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/700 (53%), Positives = 503/700 (71%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR +RPLF + + NE  VI  VM +
Sbjct: 61  VHYQEKFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V + +G+Y LNP + +  +G LDL V+
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
            T  AV+MVE EA +L+ED +L A++F H E + VI AI +LA+  AK+P  +D  D  +
Sbjct: 181 ATDTAVMMVESEAKELTEDEMLGAVMFAHAESRKVIGAIIELAEKAAKDPWEVDLTDNTA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++ ++  ++ +D+  +  +  K  R   ++  + K  + FS E S   +   +   + +
Sbjct: 241 DIKAKLKSIVGDDIAAAYKLTNKSERANALNAARDKAKAAFS-EESPQTQMVAIKTLKKV 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++ +VRT +L    R+DGR    VR I + VG L RTHGS+LF RG+TQ I   TLGT++
Sbjct: 300 ESDIVRTAILKDGQRIDGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKD 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D L G     FM+HYNF P + GEV R GAP RREIGHG+LA RA++PVLP    
Sbjct: 360 AEQMIDGLDGLTYQRFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALNPVLPSKED 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R++S++TES+GSSSMATVCG  L+LMDAGVPI +PV+GIAMGL+ +GDDF +LSD
Sbjct: 420 FPYTIRVLSDVTESNGSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGDDFTVLSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+E I   AL QAK GR HIL EM++ 
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEMTRA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L E R +L    PR+E ++I   +IR VIG GGKVIR IV  TGAKV+IDD+G +KI+S+
Sbjct: 540 LGEVRTELSAHAPRIETISIDKSKIREVIGTGGKVIREIVATTGAKVDIDDEGVIKISSA 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            +A+IEAA++ I  I + PEV K+Y G+VV ++DFGAFV+F G RDGLVH+S++  ERV 
Sbjct: 600 DVAQIEAAKKWILGIVEEPEVGKVYNGKVVNIVDFGAFVNFMGGRDGLVHVSEMKNERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K +DVVKEG  V VK+L+ D+RGK++LSM++VDQ TG  I
Sbjct: 660 KPTDVVKEGQEVKVKVLEIDNRGKVRLSMRLVDQETGAEI 699


>gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
           vulgare Y25]
 gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
           vulgare Y25]
          Length = 713

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/707 (53%), Positives = 508/707 (71%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNQIKKSIQWGDETLTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E LISR+IDR  RPLF + +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTERETLISRLIDRPCRPLFVEGFKHEVLVMATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V Y NG Y LNP +DE        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIRNKSEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSED +L A++F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEDEILGAVVFAHEQMQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D S L   ++ +  ED+R +  I  K  R   ID    K+ +  + E  +  +  + +
Sbjct: 241 PADTSALLAAVTALGGEDMRAAFAIRTKQDRVAAIDAAVAKIKAGLTEEQLA--DSSLGA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V + +++ V+R+ ++    R+DGR  + VR I ++ GLL R HGS+LF RG+TQ +VV T
Sbjct: 299 VIKQLESDVLRSDIVKHGRRIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471
           P    FPYT+R+VSEITES+GSSSMA+VCG SL+++DAGVP+  PVAG+AMGLV  KDG 
Sbjct: 419 PANTDFPYTIRVVSEITESNGSSSMASVCGGSLSMLDAGVPLKAPVAGVAMGLVLEKDG- 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QA+ GRLHI
Sbjct: 478 SWAVLTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMRKALAQARTGRLHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K L+ +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMAKSLTTAN-AFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+KIASS+   I+ A +MI SI   PE+N IYKG VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 597 TIKIASSNGEAIKKAYDMIWSIVAEPEINGIYKGTVVKLVDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +   R+   SDV+KEG  VWVKLL FDDRGK++LSMK+VDQ TG+ I
Sbjct: 657 IENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKIVDQATGEEI 703


>gi|259417548|ref|ZP_05741467.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
           TrichCH4B]
 gi|259346454|gb|EEW58268.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
           TrichCH4B]
          Length = 712

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/707 (53%), Positives = 508/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V T  ++W    L LETG++ARQ+DG V+AT GET V+A V Y R  K GQDFFPLT
Sbjct: 1   MFNVTTKTMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+Y+LNP +D+ Q         
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   +   K+++++  + E     +G + S
Sbjct: 241 PPDYSDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKEEIIASLTEEQR--EDGNLSS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I  Q GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESVVLRGDVVKNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV +D   
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+E+  +  +  PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMAKSLTEAS-EFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI +I   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANGEAIQKAYDMIYAIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase/polyadenylase [Ruegeria sp. TM1040]
 gi|123077834|sp|Q1GKK5|PNP_SILST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|99036199|gb|ABF62811.1| polyribonucleotide nucleotidyltransferase [Ruegeria sp. TM1040]
          Length = 711

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/707 (53%), Positives = 508/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V T  ++W    L LETG++ARQ+DG V+AT GET V+A V Y R  K GQDFFPLT
Sbjct: 1   MFNVTTKTMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+Y+LNP +D+ Q         
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   +   K+++++  + E     +G + S
Sbjct: 241 PPDYSDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKEEIIASLTEEQQ--EDGNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I  Q GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESVVLRGDVVKNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D  
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+E+  +  +  PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMAKSLTEAS-EFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI +I   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANGEAIQKAYDMIHAIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|58040019|ref|YP_191983.1| polynucleotide phosphorylase/polyadenylase [Gluconobacter oxydans
           621H]
 gi|81351767|sp|Q5FQL9|PNP_GLUOX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58002433|gb|AAW61327.1| Polyribonucleotide nucleotidyltransferase [Gluconobacter oxydans
           621H]
          Length = 716

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/701 (55%), Positives = 518/701 (73%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD    EIEWAGRPL LETG++ARQ+DGAV+ TYG+TVVL T V  +S+K GQDFFPLT
Sbjct: 1   MFDYFRKEIEWAGRPLILETGKVARQADGAVMITYGDTVVLCTAVGAKSVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+E E+L +R+IDR IRPLF + ++NE Q+   V+ +
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNARLIDRPIRPLFPENFRNEVQITATVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+ P +VS++  SAAL LSG+PF GPV  A++  I+G+ V+NP  DE + S LDL V+
Sbjct: 121 DNENDPALVSLIGCSAALTLSGIPFFGPVACARIGRIDGKLVVNPTHDEIKDSTLDLMVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237
           GT + VLMVE EA++LSE+ +L+A+  GH   +PVI+AI  LA+  AK P  + S  K+ 
Sbjct: 181 GTAEGVLMVESEASELSEETMLEAVTLGHTSFQPVIDAIIALAEHAAKAPWDLPSLTKEE 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L + + ++  + +  +    +K  R K++ + K ++    + E       +   + ++
Sbjct: 241 IALRKRVEKVGNKLMADAYKERQKQARYKKVAEAKDRINEILADEGLDVELAK--PMLKE 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A+VVR  +L   +R+DGRD +TVR I A+VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 299 LEAQVVRGSILKTGIRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTG 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R++FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   
Sbjct: 359 QDEQIIDALEGEYRSNFMLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRAIHPLLPSKE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+K+   + +LS
Sbjct: 419 AFPYTMRVVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIKEDRGYAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI  I+  IM +AL+QA+ GR+HIL EM+K
Sbjct: 479 DILGDEDHLGDMDFKVAGTADGVTALQMDIKITSITPEIMKIALEQAREGRIHILGEMAK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R ++    P++  +++P ++IR+VIG GGKVIR IVE +GAKV+I DDGTV IA+
Sbjct: 539 ALTEGRGEVSGNAPKITTISVPKEKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTVTIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S+  + + A   I  I   PE+ +IY+G+VVK  DFGAFV+F G RDGLVHIS+L+  RV
Sbjct: 599 SNDEQAQKAIARIEGIVAEPEIGRIYEGKVVKTADFGAFVNFLGPRDGLVHISELAEGRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKTSDVVK+GD V VK++ FDDRGK+KLSM+VVDQ TG  I
Sbjct: 659 AKTSDVVKQGDAVKVKVIGFDDRGKVKLSMRVVDQATGADI 699


>gi|294675841|ref|YP_003576456.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
           SB 1003]
 gi|294474661|gb|ADE84049.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
           SB 1003]
          Length = 717

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/704 (53%), Positives = 507/704 (72%), Gaps = 12/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    I+W G  L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNVTKKSIQWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RP+E E L+SR+IDR  RPLF   +KNE  V+  V+  
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPSEKETLVSRLIDRPCRPLFVPGFKNEVLVMATVLSC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V + +G YVLNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGFAHGAYVLNPAMDDMTKLRDNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +L+ED +L A+ FGH + +PVI+ I  LA+  AKEP   D
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELTEDEMLGAVKFGHEQMQPVIDLIIALAEDAAKEPFHFD 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIV 292
             D+S L + +    + ++R +  + +K  R   I      + S  S E  +  N G  +
Sbjct: 241 PPDYSALLDRVKAAGEAEMRAAFALRDKQERSNAISATVDLIKSKLSEEDLADINLGSAI 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              E   + ++R  +++   R+DGRD++TVR I A+VG+L RTHGS+LF RG+TQ +VV 
Sbjct: 301 KALE---SGILRGDIINGGARIDGRDNKTVRPIVAEVGILPRTHGSALFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+L+G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQIIDALNGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D 
Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILESDG 477

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HI
Sbjct: 478 RWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMQQALAQAKDGRMHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LS  R +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMSKALSAGRQEFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDG 597

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS++   I+ A +MI SI   PE  KIY+G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 598 VIKIASANAEAIKKAYDMIYSIVAEPEEGKIYRGKVVKLVDFGAFVNFFGKRDGLVHVSQ 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ++ +R+   ++ +KEG  VWVKLL FDDRGK++L MK+VDQ TG
Sbjct: 658 IAGKRLNHPNEALKEGQEVWVKLLGFDDRGKVRLGMKMVDQETG 701


>gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
 gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
          Length = 771

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/703 (54%), Positives = 510/703 (72%), Gaps = 7/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IE  G+ L LETGRIARQ+D AVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR +RPLF + + NE  VI  V+  
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ES P +V+M+AASAAL LSG+PF GP+  A+V Y +G+Y LNP LDE   G LDL V+
Sbjct: 121 DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
            T +AV+MVE EA +LSEDV+L A++F H   K V+ AI  LA+  AK+P  V    +  
Sbjct: 181 ATGNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLD 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
            L++++ ++I +D+  +  + +K  R   I+  + K  ++F+ E     S   G  + + 
Sbjct: 241 DLKKKLKKLIGKDIAAAYKLTDKSARSSAINAARDKAKAFFAEEGLDAQSVMAG--IKLT 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A++VRT +L +  R+DGR +  +R I A VG L RTHGS+LF RG+TQAI   TLG
Sbjct: 299 KKLEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T++ EQ +D L+G     FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP 
Sbjct: 359 TKDAEQMIDGLTGLHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPS 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G +F +
Sbjct: 419 KEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +SDI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I  +AL+QAK GR HIL EM
Sbjct: 479 ISDILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK LS +R +L    PR+E + I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI
Sbjct: 539 SKALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +SS + +IEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  E
Sbjct: 599 SSSDINQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNE 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RV K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 659 RVEKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 701


>gi|221640608|ref|YP_002526870.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           KD131]
 gi|254782733|sp|B9KP47|PNP_RHOSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221161389|gb|ACM02369.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           KD131]
          Length = 716

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/707 (52%), Positives = 508/707 (71%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V +  G+YVLNP +D+ Q         
Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  A EP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAHEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S +E +  N G   
Sbjct: 241 PPDYAALYAKVKSLGEAQMRAAFAIREKQDRVNAIDAARAAIKAQLSEAELADENLG--- 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV 
Sbjct: 298 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HI
Sbjct: 478 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++ +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I
Sbjct: 657 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703


>gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 716

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/707 (53%), Positives = 504/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV    I+W    L LETG++ARQ+DG+V+AT GET V+A V + R+ K GQDFFPLT
Sbjct: 1   MFDVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARAQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ GA+V + +G+YVLNP +D+ Q         
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFRGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S+L   ++   +E +R +  I +K  R   +   ++ +    + E     +G + S
Sbjct: 241 APDYSELSAAVAAAGEEQMRAAFAITDKQERTAAVAAAREAIKEALTEEQ--LEDGNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR +  +R I A+  +L RTHGS+LF RG+TQA+ V T
Sbjct: 299 AMKKLEAGILRGDVVKGGKRIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+RIVSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  +
Sbjct: 419 PAATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGN 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K LSE+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMGKALSETN-EFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS     I+ A EMI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPDGESIKKAYEMIHSIVAEPEEGQIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|77464694|ref|YP_354198.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           2.4.1]
 gi|126463534|ref|YP_001044648.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332559587|ref|ZP_08413909.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           WS8N]
 gi|123590859|sp|Q3IYT7|PNP_RHOS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611277|sp|A3PNG0|PNP_RHOS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77389112|gb|ABA80297.1| polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           2.4.1]
 gi|126105198|gb|ABN77876.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332277299|gb|EGJ22614.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           WS8N]
          Length = 716

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/707 (52%), Positives = 508/707 (71%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V +  G+YVLNP +D+ Q         
Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  A EP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAHEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S +E +  N G   
Sbjct: 241 PPDYAALYAKVKSLGETQMRAAFAIREKQDRVNAIDAARAAIKAQLSEAELADENLG--- 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV 
Sbjct: 298 TAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HI
Sbjct: 478 KWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMSKALSSAN-SFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++ +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I
Sbjct: 657 IANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703


>gi|254456606|ref|ZP_05070035.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083608|gb|EDZ61034.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 690

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/689 (54%), Positives = 509/689 (73%), Gaps = 4/689 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V+  EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV  + +    D+FPL+
Sbjct: 1   MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   +KNE Q++  V+ +
Sbjct: 61  VNYQEKYYAGGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDAFKNEVQLLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P ++++ A+SAAL +SG+PF GPV  ++V +++G+Y+LNP   E +  SLDL V+
Sbjct: 121 DKENQPDILAITASSAALAISGMPFMGPVGASRVGFVDGKYILNPSKAELENSSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EAN L+E+ +L+A+ FGH    PVIE + +LAK C K    ++ KD S+
Sbjct: 181 GTKDAVLMVESEANGLTEEEMLNAVKFGHEGFVPVIEMVEELAKECRKPEWTVEKKDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ +   +DL  +    +K  R  QI ++  K    F  E+ ++++ ++ S  ++++
Sbjct: 241 VKQKLEETFTKDLTKAFATRDKQDRSNQISEITDKAKKLFE-ENENYSDLDVNSELKNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L  K R+DGR    VR I  +VG+L RTHGS+LF RG+TQAIVV TLGT +D
Sbjct: 300 KKIVRTDILKNKNRIDGRGLSDVRPIECEVGVLPRTHGSALFTRGETQAIVVATLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ ++SL G QR  FM+HYNF P + GE  R+G   RREIGHG+LA RAI+  LP    F
Sbjct: 360 EQRIESLDGLQRERFMLHYNFPPFSVGETGRIGT-GRREIGHGKLAWRAINSSLPSKEAF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMATVCGTSLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+  IM  AL QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALSQAKDGRVHILGEMNKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S SR  +G+ TP++E + +    I  VIG GG  IR IVE++GAKV+++D+G V +A+  
Sbjct: 539 SASREDVGKHTPKMEQVNVDKKDIAAVIGKGGATIREIVEKSGAKVDVNDEGVVTVAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +MI+ IT   E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+ +RVAK
Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELADKRVAK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +DVVKEGD V VK++ F DRGK+KLSMK
Sbjct: 659 VTDVVKEGDEVKVKVIGF-DRGKVKLSMK 686


>gi|254466440|ref|ZP_05079851.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
 gi|206687348|gb|EDZ47830.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
          Length = 703

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/698 (53%), Positives = 504/698 (72%), Gaps = 11/698 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181
           V+M+AASAAL +SG PF GP+ GA+V +++G+YVLNP +D+ Q         LDL V+GT
Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFVDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           ++AV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP    + D+S+L 
Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEETAKEPFDFQAPDYSELY 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +    +E +R +  I +K  R   +   ++ + +  + E     +  + S  + ++A 
Sbjct: 241 EAVKAAGEEQMRAAFAITDKQERTAAVAAARETIKAALTEEQ--LEDANLGSAMKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGRD+ TVR I A+ GLL RTHGS+LF RG+TQ +VV TLGT +DEQ
Sbjct: 299 ILRGDVVKGGKRIDGRDTTTVRQIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D   + +L+DI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAVLTDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHILNEM K LS
Sbjct: 479 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILNEMGKALS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS + 
Sbjct: 539 ETN-EFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKIASPNG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI SI   PE  ++Y G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 DAIQKAYDMIYSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 695


>gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 716

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/707 (53%), Positives = 503/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV    I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFDVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y NG+YVLNP +D+ Q         
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFRGPIAGCRVGYTNGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHQQIQPVIDLIISLAEDAAKEPFEFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L E +    +E +R +  I +K  R   +   ++ + +  + E     +  + +
Sbjct: 241 PPDYSALYEAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTEEQ--LEDPNLGA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR +  VR I A+ GLL RTHGS+LF RG+TQA+ V T
Sbjct: 299 AMKKLEAGILRGDVVKGGKRIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G P RRE+GHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D D
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGD 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           NEMSK LSE+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 NEMSKALSETS-EFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNAEAIQKAYDMIHSIVAEPEEGKIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMK VDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKCVDQETGEEIV 704


>gi|126736200|ref|ZP_01751943.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
 gi|126714366|gb|EBA11234.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
          Length = 710

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/706 (52%), Positives = 505/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNEVKKSVQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           D+ + P +V+M+AASAAL +SG PF GP+   +V + +G+Y+LNP +D+        +  
Sbjct: 121 DMVNDPDMVAMIAASAALTISGAPFRGPIAACRVGFEDGEYILNPEIDDMHNLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIIDLAEDCAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +D+S L   +    ++ +R +  I +K  R   +   K ++V   S E     +G + +
Sbjct: 241 PEDYSDLSAAVKAAGEDKMRAAYAITDKQERTAAVTAAKAEIVEALSEEQQ--EDGNLGA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++KV+R  ++    R+DGR  +T+R I ++ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKGLESKVLRGDVVKNGKRIDGRALDTIRPIVSETGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L+G  +++FM+HYNF P + GEV R+  P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALTGMYKSNFMLHYNFPPYSVGEVGRVSGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D +
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVMEDDGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GRLHIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMSKALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K L+ ++ +     P++E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMGKALTGAQ-EFSVHAPKIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +K+AS+    I+ A +MI SI   PE   IYKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKLASNDAEAIKKAYDMIHSIVAEPEEGVIYKGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +R+   SDV+KEG  VWVKLL FDDRGK++L+MK+VDQ TG+ I
Sbjct: 658 ENKRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLAMKMVDQETGEEI 703


>gi|163796758|ref|ZP_02190716.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           BAL199]
 gi|159178012|gb|EDP62559.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           BAL199]
          Length = 684

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/678 (55%), Positives = 503/678 (74%), Gaps = 7/678 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+DGAV+A YG+TVVL TVV  ++ + G DFFPL+V+YQE+TY+ GKIPGG+ +RE 
Sbjct: 1   MARQADGAVVARYGDTVVLCTVVAAKTPRQGIDFFPLSVHYQEKTYSAGKIPGGFFKREG 60

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RPTE E+L SR+IDR IRPLF K +KNETQVI  V+ HDLE+ P VV+MV  SAAL +SG
Sbjct: 61  RPTEKEVLTSRLIDRPIRPLFVKGFKNETQVICTVLAHDLENDPDVVAMVGTSAALCISG 120

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+ G +V Y NG+YVLNP +++ + S LDL V+GTQ+ VLMVE  A++L+E+V+L
Sbjct: 121 VPFLGPIAGCRVGYTNGEYVLNPLMEDAKTSDLDLMVAGTQEGVLMVESMASELTEEVML 180

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIP 259
            A+ FGH   +PVI+AI +LA+ CAK+P+ + + D   + L   +    K D   +   P
Sbjct: 181 GAVTFGHESFQPVIQAIIELAEACAKDPMDLPAPDLDGNGLRGRVEAACKADFEAAYDEP 240

Query: 260 EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319
            K  R  Q      K  +  S E  +  +     + + I++ +VR  +L    R+DGRD+
Sbjct: 241 NKSER--QNKLAAAKAKAIASLEDPAEADAA-KGLLKGIESDIVRGRILKTGQRIDGRDT 297

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           +TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT +DEQ VD+L G  R +FM+HYN
Sbjct: 298 KTVRPIVAEVGILPRTHGSALFTRGETQALVVTTLGTGQDEQIVDALDGEYRENFMLHYN 357

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F P + GE  RMG+P RREIGHG+LA RA  P++P    FPYT+R+VSEITES+GSSSMA
Sbjct: 358 FPPYSVGEAGRMGSPGRREIGHGKLAWRATRPLMPTKDAFPYTVRVVSEITESNGSSSMA 417

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           TVCG+SLA+MDAGVP+ +P+AGIAMGL+K+G+ F +LSDI GDEDHLG MDFKVAGTD G
Sbjct: 418 TVCGTSLAMMDAGVPLPRPIAGIAMGLIKEGEQFAVLSDILGDEDHLGDMDFKVAGTDKG 477

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           ITA+QMD+KI  I++ IM +AL QA+ GRLHIL EM+K L+ +R  + +  P++ +M IP
Sbjct: 478 ITALQMDIKITSITKEIMDVALGQARDGRLHILGEMAKALTNAREGVSDTAPKMTMMKIP 537

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            D+IR VIG GGKVIR I E TGAK++I+DDG+VKI++   + ++AA   ++SI   PE+
Sbjct: 538 VDKIREVIGSGGKVIREICETTGAKIDIEDDGSVKISAVEQSALDAAYNWVKSIVAEPEI 597

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
            +IY G+VVKV++FG FV+F G +DGLVHISQL +  R  K  +VVKEGD+V VK++ FD
Sbjct: 598 GEIYTGKVVKVLEFGCFVNFLGPKDGLVHISQLVADRRPEKVDEVVKEGDSVKVKVIGFD 657

Query: 679 DRGKIKLSMKVVDQNTGK 696
           DRGK+KLSMKVVDQ TG+
Sbjct: 658 DRGKVKLSMKVVDQKTGE 675


>gi|297184037|gb|ADI20157.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L06A09]
          Length = 709

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/708 (53%), Positives = 503/708 (71%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+D  V+ATYGET VLA V + +  K+GQ FFPLT
Sbjct: 1   MFNEVKKSIKWGEETLTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E Q+ + V+ H
Sbjct: 61  VNYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL LSG PF GP+   +V +  GQYVLNP  D+        DQ 
Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+E+ +L AI F H + +PVI+ I  +A+  A EP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEEEMLGAINFAHEQIQPVIDMIIDMAEEAANEPFDY 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            S D+S+L   +    ++++R +  + +K  R   +   K  ++   S +  S  +    
Sbjct: 240 QSPDYSELYSAVKAQGEDNIRSAYALTDKQERTSAVSAAKDSIIDALSEDQVS--DPNFG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  + ++++VVR  ++    R+DGRD  TVR I ++  +L RTHGS+LF RG+TQA+ V 
Sbjct: 298 TCLKKLESEVVRGDIVKTGKRIDGRDLSTVRPIISETAVLPRTHGSALFTRGETQALAVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+LSGT R++F++HYNF P + GE  RM  P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQMIDALSGTYRSNFLLHYNFPPYSVGECGRMMGPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP   +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPPATEFPYTIRMVSEITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  A+ QAK GRLHI
Sbjct: 478 EYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKAMAQAKDGRLHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+  L+E+     E  PR+E + I P++IR VIG GGKVIR I E +GAKVNIDD+G
Sbjct: 538 LGEMANALTEAG-SFSEHAPRIETIKINPEKIREVIGSGGKVIREICEVSGAKVNIDDEG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIASS+  +IE A+EMI  I   PEV  IY G VVKVMDFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASSNGEQIEKAKEMIMEIAAEPEVGVIYTGTVVKVMDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++ ERV   SD+VKEG  V VKL+ FDDRGK++LSMKV+DQ TG+ I+
Sbjct: 657 MANERVNHPSDLVKEGQKVKVKLMGFDDRGKVRLSMKVIDQETGEEII 704


>gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718278|gb|EAS84928.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 690

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/689 (54%), Positives = 508/689 (73%), Gaps = 4/689 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V+  EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV  + +    D+FPL+
Sbjct: 1   MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   +KNE Q++  V+ +
Sbjct: 61  VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P ++++ A+SAAL +SG+PF GPV  ++V  ++G+Y+LNP   E +  +LDL V+
Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE E + L+E+V+LDA+ FGH    PVIE I +LAK C K    ++ KD S+
Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ +   EDL  +    +K  R  QI ++  K    F+ E  ++++  +    ++++
Sbjct: 241 VKKKLEENFTEDLTKAFATIDKQERSNQISEISDKAKQLFA-EDENYSDFNVNDELKNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L  K R+DGR    VR I  +VG+L RTHGS+LF RG+TQAIVV TLGT +D
Sbjct: 300 KKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ ++SL G  R  FM+HYNF P + GE  R+G   RRE+GHG+LA RAI+  LP   +F
Sbjct: 360 EQRLESLDGQHRERFMLHYNFPPFSVGETGRIGT-GRREVGHGKLAWRAINSSLPPKEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+  IM  AL+QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR  +GE TP++E + +    I  VIG GG  IR IVE++GAK++++D+G V +A+  
Sbjct: 539 SESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +MI+ IT   E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+T+RV K
Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D+VKEGD V VK++ F DRGK+KLSMK
Sbjct: 659 VTDIVKEGDEVKVKVIGF-DRGKVKLSMK 686


>gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
 gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
          Length = 713

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/704 (53%), Positives = 509/704 (72%), Gaps = 13/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG++ARQ+DG V+AT GET V+A V + ++ K+GQDFFPLT
Sbjct: 1   MFKEVKKTLQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL +SG PF GP+ GA+V Y +G YVLNP +D+        DQ 
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGSYVLNPTVDDMHLLRDNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+ED +L A++F H + +PVI+ I  LA+  AKEP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEDEMLGAVMFAHEQIQPVIDLIIDLAEDAAKEPFEF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              D+S+L   +    +E ++V+  I +K  R   +  +K ++ +  S E  +  +  + 
Sbjct: 240 TPPDYSELFGVVKAAGEEKMKVAYAISDKQERVAAVAAVKDEIKAGLSEEQLA--DANLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++++V+R+ ++  K R+DGR  + VR I ++ G+L RTHGS+LF RG+TQA+VV 
Sbjct: 298 SALKKLESQVLRSDVVVNKRRIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+L GT +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQMIDALQGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D 
Sbjct: 418 LPAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLEEDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HI
Sbjct: 478 SYGILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKTALSQAKEGRMHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK +SE+     E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMSKAISEAG-SFSEHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS +   I+ A +MI +I   PE   +YKG+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASPNGEAIQKAYDMIYAIVAEPEEGHVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +   R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG
Sbjct: 657 IENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 700


>gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
 gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
          Length = 781

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/701 (53%), Positives = 507/701 (72%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IE  G+ L LETGRIARQ+D AVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+  
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ES P +V+M+AASAAL LSG+PF GP+  A+V Y +G+Y LNP LDE   G LDL V+
Sbjct: 121 DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
            T  AV+MVE EA +LSEDV+L A++F H   K ++ AI  LA+  AK+P  V    D  
Sbjct: 181 ATGSAVMMVESEAKELSEDVMLGAVLFAHEASKKIVNAIIDLAEKAAKDPWDVAKGDDLE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFED 297
            L++++ ++I +D+  +  + +K  R   +++ + K  + F ++   +      + + + 
Sbjct: 241 DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKAQFVADGLDAQTVMAGIKLTKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +L    R+DGR +  +R I A VG L RTHGS+LF RG+TQ+I   TLGT+
Sbjct: 301 LEAEIVRGAILKDGKRIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L+G    +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 361 DAEQMIDGLNGVYYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G +F +LS
Sbjct: 421 EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I  +AL+QAK GR HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS +R +L    PR+E + I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+S
Sbjct: 541 ALSSTRTELSAHAPRIETIQIDKAKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A+IEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 601 SDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 661 EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 701


>gi|260574490|ref|ZP_05842494.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
 gi|259023386|gb|EEW26678.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
          Length = 711

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/707 (52%), Positives = 507/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    I+W G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTRKSIQWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKTAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +++M+AASAAL +SG+PF GP+  A+V +  G YVLNP +++ Q         
Sbjct: 121 DLVNEPDILAMIAASAALTISGVPFMGPIGAARVGFSKGAYVLNPDVEDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSED +L A+ FGH   +PVI+ I   A+ CAKEP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEDEMLGAVKFGHEAMQPVIDLILDFAEDCAKEPFDFA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +  +R +  I +K  R   ID     + +  + E  +  +  + S
Sbjct: 241 PPDYSALYAAVKAAGETQMRAAFAIRDKQDRTNAIDAASAAIKAALTDEQKA--DENLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ ++R  +++   R+DGRD++TVR I+++ G+L RTHGS+LF RG+TQ +V+ T
Sbjct: 299 AIKKLESSILRGDIINGGARIDGRDNKTVRPITSETGILPRTHGSALFTRGETQGLVITT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
           P   +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PPATEFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGR 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GRLHIL
Sbjct: 479 FAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPAIMEQALAQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK L+  +     + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALTGPQ-AFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVELSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASSS   I+ A ++I SI   PE+ +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASSSAEAIKKAYDLIWSIVAEPEIGQIYTGRVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +++R+   ++ +KEG  V VKLL FDDRGK++L MK+VDQ TG  I 
Sbjct: 658 ASKRLQHPNEYLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGAEIT 704


>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 692

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/688 (54%), Positives = 495/688 (71%), Gaps = 5/688 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+++ G+ L LETGR+ARQ+DGAVL T GET+VL T V  R LK GQDFFPLTVNYQE+ 
Sbjct: 7   EVDFGGQRLYLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTVNYQEKA 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D E+ P 
Sbjct: 67  YAAGRIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQENDPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           + +M+ ASAAL +SG+PF+GP+  A+V Y++G +VLNP      +  LDL V+GT+ AVL
Sbjct: 127 IPAMIGASAALAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAGTRQAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE EA +L E  +L A++FGH   +PVI  I +LA    K P    + +    L+E ++
Sbjct: 187 MVESEAQELPEATMLSAVMFGHESFQPVIACIEELAAEAGKTPWAWQAPELDPALQEAIT 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVR 304
           Q     LR +  + EK  R K++D+++  ++  F    S+  + ++V  V + ++ ++VR
Sbjct: 247 QAALAPLREAYGLVEKQARSKRLDEIRSSLLEQFGG--SAGEQADVVRGVVKKLETQIVR 304

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +LD   R+DGRD  TVR I  +VG++ RTHGS+LF RG+TQA+V+ TLGT+ DEQ VD
Sbjct: 305 GRVLDGAPRIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIVD 364

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L G  R+ FM+HYNF P +TGE   +G+P RREIGHGRLA+RA+  VLP  ++FPY+LR
Sbjct: 365 ALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPSESEFPYSLR 424

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           IVSEI ES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+KDG+ + +L+DI GDED
Sbjct: 425 IVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKDGERYAVLTDILGDED 484

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT++G+TA+QMD+KI GI+  IM  AL+QA  GRLHIL++M+ VL++ R 
Sbjct: 485 HLGDMDFKVAGTENGVTALQMDIKIDGITREIMATALEQAHAGRLHILSKMNAVLAQGRS 544

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           QL  + PR+  M I PD+IR+VIG GGKVIR + E+TGA ++I DDGTV IAS +    E
Sbjct: 545 QLSGYAPRIISMRIHPDRIRDVIGPGGKVIRALTEETGASIDIQDDGTVTIASVNGEAGE 604

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AAR  I  +T   EV  IY G+V K+MDFGAFV     RDGL+HISQ+STERV    D V
Sbjct: 605 AARRRIELLTADVEVGMIYDGKVAKIMDFGAFVTILPGRDGLLHISQISTERVNDVHDYV 664

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           KEG +V VK+L+ D +GKIKLSMK + Q
Sbjct: 665 KEGQSVRVKVLEVDRQGKIKLSMKDIAQ 692


>gi|254477352|ref|ZP_05090738.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
 gi|214031595|gb|EEB72430.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
          Length = 705

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/695 (53%), Positives = 498/695 (71%), Gaps = 11/695 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG V+AT GET V+A V + +  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181
           V+M+AASAAL +SG PF GP+ GA+V + +G+YVLNP +D+ Q         LDL V+GT
Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFTDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           ++AV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP    + D+S+L 
Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEEAAKEPFDFQAPDYSELY 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +    + ++R +  I +K  R   +   ++ + +  S E     +  + S  + ++A 
Sbjct: 241 EAVKAAGETEMRAAFAITDKQERTAAVAAARETIKAALSEEQ--LEDANLGSAMKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGRD+ TVR I ++ G+L RTHGS+LF RG+TQA+ V TLGT +DEQ
Sbjct: 299 ILRGDVVKGGKRIDGRDTTTVRQIVSETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D   + ILSDI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL EMSK LS
Sbjct: 479 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMSKALS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS+  
Sbjct: 539 ETN-AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKIASADG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 TAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETG 692


>gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales
           bacterium HTCC2654]
          Length = 716

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/704 (52%), Positives = 507/704 (72%), Gaps = 12/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG++ARQ+DG V+AT GET V+A V + +  K+GQDFFPLT
Sbjct: 1   MFNEVKKSIQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF + +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVEGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL +SG PF GP+ GA+V Y +G+YVLNP  D+        DQ 
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGEYVLNPTCDDMHDLRNNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHEQIQPVIDLIIDLAEDSAKEPFDF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            + D+S + E +    ++ +R +  I +K  R   +   K+++ +  + E  +  +  + 
Sbjct: 240 AAPDYSAIFEAVKAAGEDKVRAAYAITDKQERVAAVAAAKEEIKASLTEEQLA--DPSLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  + +++ V+R  ++ +  R+DGR  + VR I A+VGLL RTHGS+LF RG+TQ +VV 
Sbjct: 298 TALKKLESSVLRGSVVKEGKRIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+L+GT +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQMIDALTGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDA VP+  PVAG+AMGLV +D  
Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAAVPLKAPVAGVAMGLVLEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HI
Sbjct: 478 SYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K LS  R +     PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMNKALSAGRTEFSAHAPRIETMTVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDG 597

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS +   I+ A +MI +I   PE  ++YKG+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 598 VIKIASPNNDSIQKAYDMIHAIVAEPEEGQVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQ 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +   R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG
Sbjct: 658 IENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 701


>gi|71083097|ref|YP_265816.1| polynucleotide phosphorylase/polyadenylase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|123734390|sp|Q4FNM6|PNP_PELUB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71062210|gb|AAZ21213.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 690

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/689 (54%), Positives = 508/689 (73%), Gaps = 4/689 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V+  EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV  + +    D+FPL+
Sbjct: 1   MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   +KNE Q++  V+ +
Sbjct: 61  VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P ++++ A+SAAL +SG+PF GPV  ++V  ++G+Y+LNP   E +  +LDL V+
Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE E + L+E+V+LDA+ FGH    PVIE I +LAK C K    ++ KD S+
Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ +   EDL  +    +K  R  QI ++  K    F+ + + +++  +    ++++
Sbjct: 241 VKKKLEENFTEDLTKAFATIDKQDRSNQISEISDKAKQLFADDEN-YSDFNVNDELKNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L  K R+DGR    VR I  +VG+L RTHGS+LF RG+TQAIVV TLGT +D
Sbjct: 300 KKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ ++SL G  R  FM+HYNF P + GE  R+G   RRE+GHG+LA RAI+  LP   +F
Sbjct: 360 EQRLESLDGQHRERFMLHYNFPPFSVGETGRIGT-GRREVGHGKLAWRAINSSLPPKEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+  IM  AL+QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR  +GE TP++E + +    I  VIG GG  IR IVE++GAK++++D+G V +A+  
Sbjct: 539 SESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +MI+ IT   E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+T+RV K
Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D+VKEGD V VK++ F DRGK+KLSMK
Sbjct: 659 VTDIVKEGDEVKVKVIGF-DRGKVKLSMK 686


>gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1]
 gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1]
          Length = 706

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/704 (52%), Positives = 509/704 (72%), Gaps = 11/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   EI+W    L LETGR+ARQ+DG+V+AT GET V+A V + +S K G DFFPLT
Sbjct: 1   MFNIVKKEIQWGEETLTLETGRVARQADGSVIATLGETSVMANVTFAKSPKPGMDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNET V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNETLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V + +G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGFEDGEYILNPEIDDMHDLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ F H+  +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHDSIQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S+L E +    ++ +R +  I +K  R   +  +K+ +    S E     +  + +
Sbjct: 241 APDYSELFEAVKAAGEDKMREAYAITDKLERQAAVSAVKEGVKEGLSEEQ--LEDPNLSA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R+ ++    R+DGR  + VRDI ++  +L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESTVLRSDVVKNGRRIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV +D   
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI++ IM  AL+QAK GRLHIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITQEIMEKALEQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++E+  +  E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 AEMAKAVTEAG-EFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  KIYKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDSIQKAYDMIHSIVAEPEEGKIYKGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             ER+   SDV+ EG  VWVKLL FDDRGK++L+MK+V+Q TG+
Sbjct: 658 KNERLNHPSDVLSEGQEVWVKLLGFDDRGKVRLAMKMVNQETGE 701


>gi|56698213|ref|YP_168585.1| polynucleotide phosphorylase/polyadenylase [Ruegeria pomeroyi
           DSS-3]
 gi|81348968|sp|Q5LN23|PNP_SILPO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56679950|gb|AAV96616.1| polyribonucleotide nucleotidyltransferase [Ruegeria pomeroyi DSS-3]
          Length = 714

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/707 (52%), Positives = 506/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV T  ++W    L LE+G+IARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFDVTTKSMQWGEETLTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+ G +V Y++G+YVLNP +D+ Q         
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ F H + +PV++ I   A+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHAQIQPVVDLIVSFAEQCAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   +   ++ + +  + E  +  +G + S
Sbjct: 241 PPDYSDLYAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTEEQLA--DGNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGRD+ TVR I A+ GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLEAGILRGDVVKGGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGL+ +D   
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALSQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 AEMNKALSGA-ADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  ++Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDSIKKAYDMIWSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
 gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
          Length = 710

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/704 (52%), Positives = 501/704 (71%), Gaps = 11/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+DG V+AT GET V+A V + ++ K+GQDFFPLT
Sbjct: 1   MFNETKKSIQWGEETLTLETGKIARQADGTVIATLGETSVMAAVTFAKTQKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+YVLNP +D+ QG        
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYEDGEYVLNPTVDDMQGLRNNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PV++ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVVDLIIDLAEDSAKEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L E +    +E +R +  I +K  R   I   K ++ +  + E     +  + +
Sbjct: 241 PPDYSALYEAVKAAGEEKVRAAYAISDKQERVAAISAAKDEIKASLTEEQ--LEDPNLGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I ++  +L RTHGS+LF RG+TQA+VV T
Sbjct: 299 ALKKLESAVLRGDVVKNGRRIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV +D   
Sbjct: 419 PPATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL+QAK GR+HIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALEQAKAGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++E+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMAKAITEA-ADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  K+YKG VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIQKAYDMIYSIVAEPEEGKVYKGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             +R+   SD +KEG  VWVKLL FDDRGK++LSMKVVDQ TG+
Sbjct: 658 ENKRLNHPSDALKEGQEVWVKLLGFDDRGKVRLSMKVVDQETGE 701


>gi|83950704|ref|ZP_00959437.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
           ISM]
 gi|83838603|gb|EAP77899.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
           ISM]
          Length = 713

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/707 (52%), Positives = 505/707 (71%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNEVKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+Y+LNP +D+        DQ 
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYEDGEYILNPTVDDMHELRSNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + KPV++ I  LA++ AKEP   
Sbjct: 180 RLDLVVAGTRDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVVDLIIDLAEVAAKEPFDF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            + D+S L   +    ++++R +  I +K  R   +   +  + +  + E     +  + 
Sbjct: 240 QAPDYSDLYAAVKAAGEKEMRAAFAITDKQERTAAVAAARTAIKAALTEEQ--LEDANLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A ++R  ++    R+DGRD+ TVR I ++ GLL RTHGS+LF RG+TQ +VV 
Sbjct: 298 SALKKLEASILRGDVVKGGKRIDGRDTTTVRPIVSETGLLPRTHGSALFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ++D+L GT +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQFIDALHGTFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           DF IL+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL QAK GRLHI
Sbjct: 478 DFAILTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMKQALAQAKDGRLHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EMSK L+E+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMSKALTEAS-EFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS +   I+ A +MI SI   PE  ++Y G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASPNGEAIQKAYDMIHSIVAEPEEGQVYDGKVVKIVDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +   R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I
Sbjct: 657 IENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQETGEEI 703


>gi|262277754|ref|ZP_06055547.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HIMB114]
 gi|262224857|gb|EEY75316.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HIMB114]
          Length = 692

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/689 (53%), Positives = 506/689 (73%), Gaps = 3/689 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   EI WAG+ L +ETG+IARQ+DGAV+  +G+TV+++T V  +      DFFPLT
Sbjct: 1   MFNIVKKEINWAGKNLSIETGKIARQADGAVILRWGDTVIISTAVASKKTNPDTDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   ++NETQV+  V+ +
Sbjct: 61  VNYQEKFYAAGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDQFRNETQVLTTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E  P +++++A+SAAL +SGLPF+GPV  ++V  I+G+++LNP  +  + S L+L V+
Sbjct: 121 DKECDPDILAVIASSAALSISGLPFQGPVAASKVGLIDGKFILNPSKESIKSSNLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA+ L+E  +LDA+ FGH    PVI  I +LAK  +K    I+SKDFS+
Sbjct: 181 GTKEAVLMVESEASGLTEAQMLDAVKFGHENFLPVINLIEELAKEASKPKWEIESKDFSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++S  +K+ L  +    +K  R   I +  +K+   F  + + + + +I    + ++
Sbjct: 241 LKSKISSEVKDHLVKAFSEKDKKQRSSMISEANEKVEKLFEGDET-YTKVQIKDQLKSLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VRT +L +K R+DGR  + VRDI  +VG++ R HGSSLF RG+TQAIV  TLGT +D
Sbjct: 300 KDIVRTKILKEKSRIDGRKLDEVRDILCEVGIIPRAHGSSLFTRGETQAIVAATLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ  +SL G Q++ FM+HYNF P + GEV R+G   RREIGHG+LA RAI+  LP+   F
Sbjct: 360 EQRFESLEGMQKSRFMLHYNFPPFSVGEVGRVGGTGRREIGHGKLAWRAINAALPKHEDF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIVS+ITES+GSSSMATVCGSS+ALM AGVPI KP+AGIAMGL+K+G++F +LSDI
Sbjct: 420 PYTIRIVSDITESNGSSSMATVCGSSMALMHAGVPIEKPIAGIAMGLIKEGNEFSVLSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GIT++QMD+KI GI+  IM  AL+QAK+GRL ILNEM+K +
Sbjct: 480 LGDEDHLGDMDFKVAGSADGITSLQMDIKINGITFEIMEKALEQAKKGRLDILNEMAKAI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            ES  +L ++TPR+E + +    I  VIG GG  IR IVE +GAKV+I+D G V ++++ 
Sbjct: 540 KESNKELSQYTPRMEKIQVDKKDIATVIGKGGANIREIVEVSGAKVDINDSGEVTVSAAD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A +MI S+ + PEV KIY G+VVK+MDFGAFV+F G +DGLVHISQL+ +RV K
Sbjct: 600 QETRDKAIQMINSLVEKPEVGKIYSGKVVKIMDFGAFVNFLGKQDGLVHISQLAEKRVEK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SDVVKEGD V VK++ F DRGK+KLS+K
Sbjct: 660 VSDVVKEGDEVNVKVIGF-DRGKVKLSIK 687


>gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
 gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
          Length = 705

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/698 (52%), Positives = 498/698 (71%), Gaps = 11/698 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181
           V+M+AASAAL LSG PF GP+ GA+V + +G+YVLNP +D+ Q         LDL V+GT
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +DAV+MVE EA +LSE  +L A+ F H + +PV++ I  LA+  A EP    + D+S L 
Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHEQIQPVVDLIISLAEEAANEPFEFAAPDYSDLY 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +    + ++R +  I +K  R   +   ++ +    S E     +  + S  + ++A 
Sbjct: 241 EAVKAAGETEMRAAFAISDKQERTAAVAAARETIKGALSEEQ--LEDANLGSALKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGR ++ +RDI ++ GLL RTHGS+LF RG+TQ +VV TLGT +DEQ
Sbjct: 299 ILRGDVVKTGKRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D   + ILSDI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL QAK GRLHIL EM+K L+
Sbjct: 479 GDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILGEMAKALT 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS++ 
Sbjct: 539 EAS-EFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKIASANG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI +I   PE   IY G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 EAIQKAYDMIHAIVAEPEEGAIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SDV+KEG  V VKLL FDDRGK++LSMK+VDQ TG+ I
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 695


>gi|149913069|ref|ZP_01901603.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
 gi|149813475|gb|EDM73301.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
          Length = 712

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/704 (53%), Positives = 499/704 (70%), Gaps = 19/704 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 2   MFKEVKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 62  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVSGFKHEVLVMCTVLSH 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+Y+LNP        R + DQ 
Sbjct: 122 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYSDGEYILNPDVEDMHDLRNNPDQ- 180

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +LSED +L A+ F H + +PVI+ I  LA+  AKEP   
Sbjct: 181 RLDLVVAGTKDAVMMVESEAYELSEDEMLGAVTFAHEQIQPVIDLIIDLAEDTAKEPFDF 240

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              D+S L + +    ++ +R +  I +K  R   +   K+ + +  S E     +  + 
Sbjct: 241 SPPDYSALYDAVKAAGEDKVRAAYAITDKQERTAAVSAAKEAIKASLSEEQ--LEDPNLG 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A V+R  ++    R+DGR  +TVR I ++ GLL RTHGS+LF RG+TQA+VV 
Sbjct: 299 SALKKLEASVLRGDVVKTGKRIDGRSLDTVRQIVSETGLLPRTHGSALFTRGETQALVVT 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+L G  R++F++HYNF P + GE  R+G P RRE+GHG+LA RA+  V
Sbjct: 359 TLGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREVGHGKLAWRALQAV 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 419 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ +L+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL QAK GRLHI
Sbjct: 479 EYAVLTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMKKALAQAKDGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LNEMS  L+E+    G+F+   PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+
Sbjct: 539 LNEMSNALTEA----GDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 594

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G +KIAS +   I+ A EMI SI   PE   IYKG VVK++DFGAFV+F G RDGLVH
Sbjct: 595 DEGIIKIASPNSEAIQKAYEMIHSIVAEPEEGGIYKGTVVKIVDFGAFVNFFGKRDGLVH 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +SQ+   R+   SDV+KEG  VWVKLL FDDRGK++LSMK+VDQ
Sbjct: 655 VSQIENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKLVDQ 698


>gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
 gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 712

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/707 (53%), Positives = 498/707 (70%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    ++W    L LETG++ARQ+DG V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNVTKKSMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172
           DL + P +V+M+AASAAL LSG PF GP+  A+V +  G+YVLNP        RL+ DQ 
Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              D+S+L   +    +E +R +  I +K  R   +   ++ + +  S E     +  + 
Sbjct: 240 QPADYSELFAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQ--LEDANLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A ++R  ++    R+DGR +  VR I ++ G+L RTHGS+LF RG+TQA+ V 
Sbjct: 298 SALKKLEAGILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + ILSDI GDEDHLG MDFKVAGTD GIT++QMD+K+ GI+  IM  AL QAK GRLHI
Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K LSE+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG
Sbjct: 538 LGEMAKALSETN-AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS+    I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASADGTAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +   R+   SDV+KEG  V VKLL FDDRGK++LSMK+VDQ TG+ I
Sbjct: 657 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 703


>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
 gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
          Length = 773

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/697 (52%), Positives = 495/697 (71%), Gaps = 3/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+   V IEW G+ L LETG++ARQ+DGAV+AT GETVVL  V   +++K+GQDFFPLT
Sbjct: 1   MFNTKKVAIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKNVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  + G+IPGG+ +RE   TE E LISR+IDR IRPLF + + NE   I  V+ +
Sbjct: 61  VHYQEKFSSAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNEINCIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E+ P +++M+AASAAL +SG+PF GP+  A+V Y NG+Y LNP   E  +G LDL V+
Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T DAV+MVE EA +LSE+V+L A++F H     VIEAI  LA+  AK+P  ++  D  K
Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASGQVIEAIIDLAEQAAKDPWELNVGDDQK 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++ E+ +++ +D+  +  + +K  R   + + + K  +   ++ +   +     + + +
Sbjct: 241 AVKAELKKLVGKDITAAYKLTDKQARQTALGEARAKAKAA-MADRTPQEQLAAAKLVKKL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VRT +L    R+DGR +  +R I ++V  L R HGS+LF RG+TQ I   TLGT++
Sbjct: 300 EAEIVRTAILKDGRRIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKD 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D L+G     FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP   +
Sbjct: 360 AEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+ S+ITES+GSSSMATVCG SL+LMDAGVP+ +PV+GIAMGL+ +G D+ ILSD
Sbjct: 420 FPYTIRVTSDITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAILSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT MQMD+KI GI++ I   AL QAK GR HIL EM+K 
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALAQAKDGRAHILGEMNKA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L E+R +L    PR+E M I   +IR+VIG GGKVIR IV  TGAKV+IDD+G +KI+SS
Sbjct: 540 LGETRTELSAHAPRIETMTIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKISSS 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+IEAA   I+ I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV 
Sbjct: 600 DSAQIEAAMNWIKGIVEEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           K SDV+ EG  V VK+L+ D RGK++LSM+VVDQ TG
Sbjct: 660 KVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETG 696


>gi|330813312|ref|YP_004357551.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327486407|gb|AEA80812.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 695

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/695 (55%), Positives = 509/695 (73%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   EI W  + L LETGR+ARQ+DGAV+ T GETV+LAT V  +  K   DFFPLT
Sbjct: 1   MFNITKKEITWGDKKLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE E LISR+IDR IRPLF   ++NETQV+  V+ +
Sbjct: 61  VNYQEKYYAAGKIPGGYFKREARPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+ P  ++++A+SAAL +SG+PF GPV  A+V  I+G++VLNP  ++ + S L+L V+
Sbjct: 121 DKENDPEALALIASSAALAISGIPFMGPVAAAKVGMIDGEFVLNPTKEQIKDSQLELIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EA+ LSE  +LDA+ FGH++ K VI  I   AK   KE   I+ KD+S+
Sbjct: 181 GTEDAVLMVESEASGLSEKQMLDAVKFGHDKAKEVINLIKDFAKEAGKERWKIEEKDYSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+E++S  + +DL+ +    +K +R   I   K K+ + F  + + +++ EI   F+ ++
Sbjct: 241 LKEKISSAVADDLQKAFDESDKQIRTGLIAAAKDKVTAMFEGDET-YSKVEIGDQFKSVE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L    R+D R    VRDI  +VG+L + HGSSLF RG+TQA+VV TLGT +D
Sbjct: 300 KKIVRTQILKDSKRIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +++L G +R+ FM+HYNF P + GEV R+G   RREIGHG+LA RAI+  LP   +F
Sbjct: 360 EQRLETLDGAERSRFMLHYNFPPYSVGEVGRIGT-GRREIGHGKLAWRAINSSLPSKEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMATVCG+SLALMDAGVPI  P+AGIAMGL+K+GDD+ ILSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMATVCGASLALMDAGVPIKTPIAGIAMGLIKEGDDYSILSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+ +IM  AL QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFDIMEKALDQAKEGRIHILGEMAKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +ESR +L + TP++E + +    I  VIG GG  IR IVE +GAK++I+DDG V IA++ 
Sbjct: 539 TESRKELSKNTPKMERIQVDKKDIAAVIGKGGATIREIVELSGAKLDINDDGMVTIAAAD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +M++ I   PE+ KIYKG+VVK+M+FGAFV+F G +DGLVHISQL+ +RV  
Sbjct: 599 EESRMKAVQMVKDIVAKPEMGKIYKGKVVKIMEFGAFVNFLGKQDGLVHISQLAAKRVEN 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            SDVVKEGD V VK++ F DRGK+KLSMK V ++T
Sbjct: 659 VSDVVKEGDEVSVKVVGF-DRGKVKLSMKEVTEDT 692


>gi|254461626|ref|ZP_05075042.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium
           HTCC2083]
 gi|206678215|gb|EDZ42702.1| 3' exoribonuclease family, domain 2 [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 713

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/706 (51%), Positives = 502/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW    L LETG++ARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGDDTLTLETGKVARQADGCVIATLGETSVMAAVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL++ P  ++M+AASAAL +SG PF GP+  A+V +++G+Y LNP +D+ Q         
Sbjct: 121 DLDNDPDTLAMIAASAALTISGAPFMGPIACARVGFVDGEYTLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHEQIQPVIDLIVDLAEDCAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   ++   ++D+R +  I +K  R   ++D +  +    + E  +  +  + S
Sbjct: 241 PADYSELSAAVAAAGEKDMRAAFAITDKQERTTAVNDARAVIKDALTEEQLA--DANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGRD+ T+R I ++ GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEAGILRGDVVKTGKRIDGRDTTTIRPIVSETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++DSL G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDSLHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLIMEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ +IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPDIMEKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K +  ++ +     PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMGKAIDGAQ-EFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGESIKKAYDMIYSIVAEPEEGMVYDGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQATGEEV 703


>gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
 gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
          Length = 710

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/707 (52%), Positives = 500/707 (70%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      I+W    L LETG++ARQ+DG V+ATYGET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKEVKKSIQWGEETLTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  VI  V+ H
Sbjct: 61  VHYNEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G Y+LNP +D+        DQ 
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAACRVGFEDGDYILNPEMDDMHKLRENPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEEEMLGAVEFAHAQIQPVIDMIVDLAEDAAKEPFNF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            + D+S L + ++   ++ +R +  I +K  R   + D +  + +  S E     +  + 
Sbjct: 240 SAPDYSDLSKAVAAAGEKQMRAAFAISDKQERTTAVSDARTAIKAALSEEQ--LGDENLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A ++R  ++    R+DGR ++ +R+I ++ G+L RTHGS+LF RG+TQ +VV 
Sbjct: 298 SALKKLEASILRGDVVKTGKRIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +DSL G  +++F++HYNF P + GEV R G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQMIDSLQGMYKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIMEDSG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HI
Sbjct: 478 EYAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPAIMKEALAQAKVGRIHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K +S S  +  E  P++E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G
Sbjct: 538 LGEMNKAMS-STGEFSEHAPKIETMQVPVDKIREVIGSGGKVIREIVEVSGAKVDINDEG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIASS+   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G +DGLVH+SQ
Sbjct: 597 IIKIASSNAEAIKKAYDMIWSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKKDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +   R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 657 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703


>gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
 gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
          Length = 710

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/711 (52%), Positives = 502/711 (70%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +EW    L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNEVKKSMEWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKAQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GKIPGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  +I  V+ H
Sbjct: 61  VHYGEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLLICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL +SG PF GP+  A+V +  G+YVLNP +D+        DQ 
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAAARVGFTEGEYVLNPSIDDMHKLRDNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +LSE  +L A+ F H+  +PVI+ I  LA+ CAKEP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEAEMLGAVRFAHDSFQPVIDLIIDLAEDCAKEPFAY 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              DFS+L   ++   ++D+R +  + +K  R   +   +  + +  + E     +  + 
Sbjct: 240 APADFSELSTAVAAAGEKDMRAAFALTDKQERTSAVSAARDVIKAALTDEQ--LEDANLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A ++R  ++    R+DGRD+ T+R I ++ G+L RTHGS+LF RG+TQ +VV 
Sbjct: 298 SALKKLEAGILRGDVVKTGKRIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+L GT +++FM+HYNF P + GEV R G   RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQMIDALHGTYKSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ +D  
Sbjct: 418 LPAATDFPYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLILEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HI
Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMEKALAQAKDGRMHI 537

Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           L EM+K LS +    G+F+   PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+
Sbjct: 538 LGEMNKALSGA----GDFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G +KIAS +   I+ A +MI SI   PE   IY G+VVK++DFGAFV+F G RDGLVH
Sbjct: 594 DEGVIKIASPNGDSIKKAYDMIHSIVAEPEEGVIYDGKVVKIVDFGAFVNFFGKRDGLVH 653

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +SQ+   R+   SDV+KEG  V VKLL FDDRGK++L+MK+VDQ TG  IV
Sbjct: 654 VSQIENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLAMKMVDQETGLEIV 704


>gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
 gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
          Length = 704

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/699 (53%), Positives = 494/699 (70%), Gaps = 13/699 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQGSLDLFVSG 180
           V+M+AASAAL LSG PF GP+  A+V +  G+YVLNP        RL+ DQ  LDL V+G
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQ-RLDLVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T+DAV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP      D+S+L
Sbjct: 180 TKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDFQPADYSEL 239

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              +    +E +R +  I +K  R   +   ++ + +  S E     +  + S  + ++A
Sbjct: 240 FAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQ--LEDANLGSALKKLEA 297

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            ++R  ++    R+DGR +  VR I ++ G+L RTHGS+LF RG+TQA+ V TLGT +DE
Sbjct: 298 GILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDE 357

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FP
Sbjct: 358 QFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFP 417

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDI 479
           YT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D   + ILSDI
Sbjct: 418 YTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDI 477

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD GIT++QMD+K+ GI+  IM  AL QAK GRLHIL EM+K L
Sbjct: 478 LGDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKAL 537

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS+ 
Sbjct: 538 SETN-AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKIASAD 596

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+   R+  
Sbjct: 597 GTAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNH 656

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SDV+KEG  V VKLL FDDRGK++LSMK+VDQ TG+ I
Sbjct: 657 PSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 695


>gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter
           denitrificans OCh 114]
 gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter
           denitrificans OCh 114]
          Length = 711

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/706 (51%), Positives = 501/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     IEW    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR +RPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ GA+V + +G+Y+LNP +D+ Q         
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAGARVGFEDGEYILNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H+  +PV++ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDCAKEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +    + ++R +  I +K  R   +   ++ +++  S E     +  + S
Sbjct: 241 PPDYSELSAAVKAAGETEMRAAFAISDKQERTTAVAAARETIMAALSDEQK--EDPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +RDI  + GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEASILRGDVVKTGKRIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++ ++       PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMAKSITGAQ-DFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 703


>gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
 gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
          Length = 702

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/696 (52%), Positives = 498/696 (71%), Gaps = 11/696 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181
           V+M+AASAAL LSG PF GP+  A+V +  G+YVLNP +D+ Q         LDL V+GT
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +DAV+MVE EA +LSE  +L A+ F H+  +PVI+ I  LA+  A EP    + D+S+L 
Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVIDLIISLAEEAANEPFEFAAPDYSELF 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +      ++R +  I +K  R   +   ++ + +  S E    ++  + S  + ++A 
Sbjct: 241 EAVKAAGDTEMRAAFAISDKQERTAAVAAARETIKAALSEEQ--LDDANLGSAMKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGR ++ +RDI ++ G+L RTHGS+LF RG+TQ +VV TLGT +DEQ
Sbjct: 299 ILRGDVVKTGKRIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D   + ILSDI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GR+HIL EM+K LS
Sbjct: 479 GDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMNKALS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +  +     PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G +KIAS + 
Sbjct: 539 GA-AEFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKIASPNG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 DSIKKAYDMIYSIVAEPEEGKIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           SDV+KEG  V VKLL FDDRGK++LSMK++DQ TG+
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKMIDQETGE 693


>gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 690

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/692 (54%), Positives = 500/692 (72%), Gaps = 13/692 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+++ GR L+LETGR+ARQ+DGAVL + G+TVVL T V  R +K GQDFFPLTVNYQE+ 
Sbjct: 5   EVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQEKA 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  V+  D ++ P 
Sbjct: 65  YAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           ++++V ASAAL +SG+PF GP+  A+V YI+G+YVLNP   +   S LDL V+GT+ AVL
Sbjct: 125 ILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTRQAVL 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLE 241
           MVE EA QLSE+++L+A++FGH + +PVIE I  LA+   K        V D     ++ 
Sbjct: 185 MVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALGVQVR 244

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQA 300
           E+ + +++E    +  + EK  R K+++D+++ M   F S+ +    G++V  + + I+ 
Sbjct: 245 EKATPLLQE----AYALTEKQARSKRLEDVQQAMAVEFGSDDA--GRGDMVRGLLKKIET 298

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  +LD   R+DGRDS+TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ DE
Sbjct: 299 GIVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDE 358

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G  R+ FM+HYNF P +TGE   +G+P RREIGHGRLA+RAI  VLP  ++FP
Sbjct: 359 QIIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFP 418

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y+LR+VSE+ ES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+G  F +L+DI 
Sbjct: 419 YSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM  ALQQA  GRLHIL  M+ VLS
Sbjct: 479 GDEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR+VIG GGKVIR + E+TGA ++I D+GTV IAS   
Sbjct: 539 RGRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDG 598

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
               AA+  I  +T   +V+ IY G+V K+MDFGAFV     RDGL+HISQ+S ERV+  
Sbjct: 599 EAGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDV 658

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            D +KEG  V VK+L+ D +GKIKLSMK + Q
Sbjct: 659 HDHLKEGQAVRVKVLEVDRQGKIKLSMKDIPQ 690


>gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
 gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
          Length = 711

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/706 (52%), Positives = 497/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    I+W    L LETG++ARQ+DG+V+AT GET V+A V Y R  K GQDFFPLT
Sbjct: 1   MFNVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTYARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y  G Y+LNP +D+ Q         
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGYEGGDYILNPTIDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    ++++R +  I +K  R   +   ++ +    + E     +  + S
Sbjct: 241 PDDYSDLSAAVKAAGEDEMRAAFAIADKQERTAAVAAARETIKGKLTEEQ--LEDKNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +RDI A+ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEASILRGDVVKTGKRIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G P RRE+GHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGL+ +D   
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMEKALAQAKDGRIHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKALSGAS-DFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANGDAIKKAYDMIYSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEV 703


>gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 692

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/692 (54%), Positives = 500/692 (72%), Gaps = 13/692 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+++ GR L+LETGR+ARQ+DGAVL + G+TVVL T V  R +K GQDFFPLTVNYQE+ 
Sbjct: 7   EVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQEKA 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  V+  D ++ P 
Sbjct: 67  YAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           ++++V ASAAL +SG+PF GP+  A+V YI+G+YVLNP   +   S LDL V+GT+ AVL
Sbjct: 127 ILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTRQAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLE 241
           MVE EA QLSE+++L+A++FGH + +PVIE I  LA+   K        V D     ++ 
Sbjct: 187 MVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALGVQVR 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQA 300
           E+ + +++E    +  + EK  R K+++D+++ M   F S+ +    G++V  + + I+ 
Sbjct: 247 EKATPLLQE----AYALTEKQARSKRLEDVQQAMAVEFGSDDA--GRGDMVRGLLKKIET 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  +LD   R+DGRDS+TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ DE
Sbjct: 301 GIVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDE 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G  R+ FM+HYNF P +TGE   +G+P RREIGHGRLA+RAI  VLP  ++FP
Sbjct: 361 QIIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y+LR+VSE+ ES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+G  F +L+DI 
Sbjct: 421 YSLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDIL 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM  ALQQA  GRLHIL  M+ VLS
Sbjct: 481 GDEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR+VIG GGKVIR + E+TGA ++I D+GTV IAS   
Sbjct: 541 RGRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDG 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
               AA+  I  +T   +V+ IY G+V K+MDFGAFV     RDGL+HISQ+S ERV+  
Sbjct: 601 EAGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDV 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            D +KEG  V VK+L+ D +GKIKLSMK + Q
Sbjct: 661 HDHLKEGQAVRVKVLEVDRQGKIKLSMKDIPQ 692


>gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
 gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
          Length = 713

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/707 (52%), Positives = 498/707 (70%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG+IARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKETKKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF   +K+ET V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           DL + P +V+++A SAAL +SG PF GP+ G +V +++G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDIVALIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHDLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + KPV + I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVCDLIISLAEDCAKEPFNFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   I   ++ + +  S E     +  + S
Sbjct: 241 PPDYSDLYAAVKAAGEEQMRAAFAIRDKQERTHAISAAREAIKAKLSDEQ--LEDQNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ V+R  ++    R+DGR  + +R I  + GLL RTHGSSLF RG+TQA+VV T
Sbjct: 299 AFKKLESTVLRGDVVKNGNRIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+GAP RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGAPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D  
Sbjct: 419 PPATDFPYTVRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F ILSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+  IM  AL+QAK GRLHIL
Sbjct: 479 FAILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKALSGA-AEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  K+Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGESIKKAYDMIWSIVAEPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQVTGEEIV 704


>gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
 gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
          Length = 710

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/707 (52%), Positives = 500/707 (70%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      I+W    L LETG++ARQ+DG V+ATYGET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKEVKKSIQWGEETLTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF + +KNE  VI  V+ H
Sbjct: 61  VHYGEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVEGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL +SG PF GP+   +V +  G Y+LNP +D+        DQ 
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAACRVGFEGGDYILNPEMDDMHKLRENPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AK P   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELSEEEMLGAVEFAHAQIQPVIDMIVDLAEDAAKAPFDF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            + D+S L + +++  ++ +R +  I +K  R   ++D +  + +  S E  S  +  + 
Sbjct: 240 QAPDYSGLSKAVAKAGEKQMRKAFAIGDKQERTTAVNDARDAIKAALSEEQLS--DENLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A ++R  ++    R+DGR ++ +RDI ++ G+L RTHGS+LF RG+TQ +VV 
Sbjct: 298 SALKKLEASILRGDVVKTGKRIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +DSLSG  +++FM+HYNF P + GEV R G   RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQMIDSLSGMYKSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIMQDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HI
Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPAIMKEALAQAKVGRVHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K LS S  +  E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G
Sbjct: 538 LGEMNKALS-SASEFSEHAPRIETMQIPVDKIREVIGSGGKVIREIVEMSGAKVDINDEG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G +DGLVH+SQ
Sbjct: 597 IIKIASPNGEAIKKAYDMIWSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKKDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +   R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 657 IENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703


>gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
 gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
          Length = 711

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/706 (52%), Positives = 500/706 (70%), Gaps = 19/706 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNVTKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G YVLNP        RL+ DQ 
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT++AV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP   
Sbjct: 180 RLDLVVAGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              D+S L   +    ++ +R +  I +K  R   +   ++ + +  + E     +  + 
Sbjct: 240 QPVDYSDLSAAVKAAGEDAMRAAFAIADKQERTAAVAAARETIKAALTEEQ--LEDANLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A ++R  ++    R+DGR ++ +RDI A+ G+L RTHGSSLF RG+TQ +VV 
Sbjct: 298 SALKGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ++D+L G  +++FM+HYNF P + GEV R+G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP +  FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPASTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HI
Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGRVHI 537

Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           L EM+K +S +    GEF+   PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+
Sbjct: 538 LGEMNKAISGA----GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH
Sbjct: 594 DEGIIKIASPNGDSIKKAYDMIWSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVH 653

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +SQ+   R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ T
Sbjct: 654 VSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQET 699


>gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
 gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
          Length = 711

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/706 (52%), Positives = 500/706 (70%), Gaps = 19/706 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNVTKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--------RLDEDQG 172
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G YVLNP        RL+ DQ 
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT++AV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP   
Sbjct: 180 RLDLVVAGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDF 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              D+S L   +    ++ +R +  I +K  R   +   ++ + +  + E     +  + 
Sbjct: 240 QPVDYSDLSAAVKAAGEDAMRAAFAIADKQERTAAVAAARETIKAALTEEQ--LEDANLG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S  + ++A ++R  ++    R+DGR ++ +RDI A+ G+L RTHGSSLF RG+TQ +VV 
Sbjct: 298 SALKGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ++D+L G  +++FM+HYNF P + GEV R+G P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           LP +  FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D 
Sbjct: 418 LPASTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HI
Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGRVHI 537

Query: 532 LNEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           L EM+K +S +    GEF+   PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+
Sbjct: 538 LGEMNKAISGA----GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIN 593

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH
Sbjct: 594 DEGIIKIASPNGDSIKKAYDMIWSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVH 653

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +SQ+   R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ T
Sbjct: 654 VSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQET 699


>gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
 gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
          Length = 711

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/710 (52%), Positives = 497/710 (70%), Gaps = 17/710 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      +EW    L LETG++ARQ+DG+V+ATYGET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKEVKKSVEWGEETLTLETGKVARQADGSVIATYGETSVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  VI  V+ H
Sbjct: 61  VHYNEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G+Y+LNP LD+        +  
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPISACRVGFEDGEYILNPELDDMHDLRNKPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +  I+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVKFAHEQIQTPIDLIIALAEECAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D++ L   +    ++ +R +  I +K  R   +   K  + +  + E     +  + S
Sbjct: 241 APDYADLFAAVKAAGEDAMRDAYAITDKQERTSAVAAAKDAIKAALTEEQ--LEDENLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR ++ VRDI  + GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESGVLRGDVVKNGKRIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVAT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++FM+HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALQGMYRSNFMLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV +D  D
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGD 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ +IM  AL QAK GRLHIL
Sbjct: 479 YAILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPDIMEKALAQAKEGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            EM+K +S +    GEF+   PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D
Sbjct: 539 GEMNKSISSA----GEFSAHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDIND 594

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG +KIAS++   I  A EMI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+
Sbjct: 595 DGIIKIASANADSIAKAYEMIHSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHV 654

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           SQ+   R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG  I 
Sbjct: 655 SQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGAEIT 704


>gi|114769588|ref|ZP_01447198.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114549293|gb|EAU52175.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HTCC2255]
 gi|297183954|gb|ADI20075.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
 gi|297184260|gb|ADI20378.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L27A02]
          Length = 709

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/708 (53%), Positives = 502/708 (70%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+D  V+ATYGET VLA V + +  K+GQ FFPLT
Sbjct: 1   MFNEVKKSIKWGEETLTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E Q+ + V+ H
Sbjct: 61  VNYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--------DQG 172
           DL + P +V+M+AASAAL LSG PF GP+   +V +  GQYVLNP  D+        DQ 
Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQ- 179

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            LDL V+GT+DAV+MVE EA +L+E+ +L AI F H + +PVI+ I  +A+  A EP   
Sbjct: 180 RLDLVVAGTKDAVMMVESEAYELTEEEMLGAINFAHEQIQPVIDMIIDMAEDAANEPFDY 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            S D+S+L   +    ++ +R +  + +K  R   +   K  ++   S E  S  +    
Sbjct: 240 QSPDYSELYSAVKASGEDSIRSAYALTDKQERTSAVAAAKDLIIDALSEEQVS--DANFG 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  + ++++VVR  ++    R+DGRD  TVR I ++  +L RTHGS+LF RG+TQA+ V 
Sbjct: 298 TCLKKLESEVVRGDIVKTGKRIDGRDLSTVRPIVSETAVLPRTHGSALFTRGETQALAVT 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT +DEQ +D+LSGT R++F++HYNF P + GE  RM  P RREIGHG+LA RA+  V
Sbjct: 358 TLGTGDDEQMIDALSGTYRSNFLLHYNFPPYSVGECGRMMGPGRREIGHGKLAWRALQAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGD 471
           LP   +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  
Sbjct: 418 LPPVTEFPYTIRMVSEITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSG 477

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  A++QAK GRLHI
Sbjct: 478 EYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKAMEQAKDGRLHI 537

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+  L+E+     E  PR+E + I P++IR VIG GGKVIR I E +GAKVNIDD+G
Sbjct: 538 LGEMANALTEAG-SFSEHAPRIETIKINPEKIREVIGSGGKVIREICEVSGAKVNIDDEG 596

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +KIASS+  +IE A+EMI  I   PEV  +Y G VVKVMDFGAFV+F G RDGLVH+SQ
Sbjct: 597 VIKIASSNGEQIEKAKEMIMEIAAEPEVGVVYTGTVVKVMDFGAFVNFFGKRDGLVHVSQ 656

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++ ERV   SD+VKEG  V VKL+ FDDRGK++LSMKV+DQ TG+ I 
Sbjct: 657 MANERVNHPSDLVKEGQKVKVKLMGFDDRGKVRLSMKVIDQETGEEIT 704


>gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
 gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
          Length = 711

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/706 (51%), Positives = 497/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     IEW    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR +RPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y  G+YVLNP +D+ Q         
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAGCRVGYEGGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H+  +PV++ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDTAKEPFDFA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +    + ++R +  I +K  R   +   +  +++  + E     +  + S
Sbjct: 241 PADYSELSAAVKAAGETEMRAAFAISDKQERTSAVSAARDTIMAALTDEQK--EDPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++  ++R  ++    R+DGR ++ +RDI ++ GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEGSILRGDVVKTGTRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++ ++       PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMAKAITGAQ-DFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEV 703


>gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
 gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
          Length = 712

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/709 (52%), Positives = 501/709 (70%), Gaps = 17/709 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    +EW    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNVTKKSMEWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y++G YVLNP +++  G        
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYVDGDYVLNPDVEDMNGLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L + +    +  +R +  I +K  R   +   K+ + +  S E     +  + S
Sbjct: 241 PPDYSALYDVVKAAGEAQMRDAYAITDKQERVAAVAAAKEAIKAGLSEEQ--LEDPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I  + GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESTVLRGTVVKDGKRIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV +D  +
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLEDDGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 FAILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            EM+K    ++   GEF+   PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D
Sbjct: 539 GEMNK----AQAGTGEFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDIND 594

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G +KIAS +   I+ A +MI SI   PE  +IYKG+VVK++DFGAFV+F G RDGLVH+
Sbjct: 595 EGIIKIASPNGDAIQKAYDMIHSIVAEPEEGQIYKGKVVKIVDFGAFVNFFGKRDGLVHV 654

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SQ+   R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG+ I
Sbjct: 655 SQIENRRLNHPSDVLKEGQEVFVKLLGFDDRGKVRLAMKMVDQETGEEI 703


>gi|85706001|ref|ZP_01037097.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
 gi|85669589|gb|EAQ24454.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
          Length = 713

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/706 (52%), Positives = 495/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG+IARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKETKKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF   +K+ET V+  V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           DL + P +V+M+A SAAL +SG PF GP+ G +V +++G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHNLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PV + I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVCDLIISLAEDCAKEPFNFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +     E +  +  I +K  R   I   ++ + +  S E  +  +  + S
Sbjct: 241 PPDYSELYAAVKAAGAEQMHAAFAIRDKQERTHAISAAREAIKAKLSEEQLA--DENLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ V+R  ++    R+DGR  + +R I  + GLL RTHGSSLF RG+TQA+VV T
Sbjct: 299 AFKKLESSVLRGDVVKNGNRIDGRRLDEIRSIVCETGLLPRTHGSSLFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D  
Sbjct: 419 PPATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F ILSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+  IM  AL+QAK GRLHIL
Sbjct: 479 FAILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K LS +  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMDKALSGA-AEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  K+Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGESIKKAYDMIWSIVAEPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703


>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1]
 gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1]
          Length = 701

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/706 (50%), Positives = 493/706 (69%), Gaps = 15/706 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++HT  +++  + + LETGR+ARQ++GAV+ TYG+TVVL T V + S++ GQDFFPL+
Sbjct: 1   MFNIHTKSVQFGEKTITLETGRVARQANGAVMVTYGDTVVLVTAVAETSMRAGQDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ +A GKIPGG+++RE+RP+E E+L SR+IDR IRPLF K + NETQV+  V+ +
Sbjct: 61  VHYQEKFWAAGKIPGGFIKRETRPSEREVLTSRLIDRPIRPLFPKGFMNETQVVAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +    + +++  SAAL LSG+PFEGP+ GA+V +I+G+ VLNP +D+   S LDL V+
Sbjct: 121 DPDYPSDIAALIGCSAALALSGVPFEGPIGGARVGFIDGKPVLNPTVDQLAASRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AV MVE E + LSED +LD ++F H   +PVI AI +L     K     EP+ ++ 
Sbjct: 181 GTRSAVTMVESEVDFLSEDEMLDCVMFAHESFQPVITAIEELVAEAGKPRWVVEPVQVNE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGE 290
              +++ ++ +  + E    +  IPEK  R + +  +K   +    +      S     E
Sbjct: 241 ALLAEMNDKFAAQVTE----AYAIPEKMARYEAVAQVKAAAMEALGTIEVDGQSVKRSEE 296

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           + S+F+ I+++ +R  +L  K R+DGR    +R I+ +V +L R HG++LF RG+TQAI 
Sbjct: 297 VASLFKKIESRTLRQNVLQGK-RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIA 355

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            VTLGT  DEQ V++LSG  R+ F ++Y F P   GE  RMGAP RREIGHG+LA RA+ 
Sbjct: 356 TVTLGTSRDEQIVETLSGEYRDRFYLNYTFPPYCVGETGRMGAPGRREIGHGKLATRALT 415

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            ++P    FPYTLRI SEITES+GSSSMATVCG+ LA+ DAGVPI  PVAGIAMGLVK+G
Sbjct: 416 AIVPSAEVFPYTLRITSEITESNGSSSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEG 475

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKVAG   GITA+QMD+KI GI+  IM  AL+QA+ GRLH
Sbjct: 476 DAYAVLSDILGDEDHLGDMDFKVAGNADGITALQMDIKITGITREIMAKALEQARAGRLH 535

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL EM K ++  R ++  + PR+  M I PD+IR VIG GGKVIR I E+TG  ++I+DD
Sbjct: 536 ILGEMGKAMTTHRAEMSAYAPRIHTMKIHPDKIREVIGSGGKVIRSITEETGCAIDIEDD 595

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GT++IASS  A  E A ++I+SI    E  ++Y+G+VV++ DFGAFV+    +DGLVHIS
Sbjct: 596 GTIRIASSDQASAEQAVKIIKSIVAEVEKGQVYEGKVVRITDFGAFVNILPNKDGLVHIS 655

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           QL+  RV   +DVVKEGD V VK+LD D +G++KL+MK +++   +
Sbjct: 656 QLANRRVQNVTDVVKEGDVVTVKVLDVDRQGRVKLTMKEMEEGAAE 701


>gi|84515054|ref|ZP_01002417.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
           SKA53]
 gi|84511213|gb|EAQ07667.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
           SKA53]
          Length = 713

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/706 (51%), Positives = 503/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     ++W    L LETG++ARQ+DG+V+AT GET V+A V + +S K GQDFFPLT
Sbjct: 3   MFNEVKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKSQKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  V+  V+  
Sbjct: 63  VHYQEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSF 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-------DQGS 173
           D  + P +++M+AASAAL +SG PF GP+   +V +++G+Y+LNP +D+        +  
Sbjct: 123 DGVNDPDMIAMIAASAALTISGAPFMGPIGACRVGFVDGEYILNPEIDDMHNLRTKPEQR 182

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 183 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHAQIQPVIDLIIDLAEDCAKEPFDFQ 242

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +D+S+L   +    ++ +R +  I +K  R   +   K  +++  + +  +  +  +  
Sbjct: 243 PEDYSELYATVKSAGEDKMRAAYAITDKQERTGAVSAAKADIIAALTEDQRA--DTNLGP 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + +R I ++ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 301 ALKKLESAVLRGDVVKHGRRIDGRALDQIRPIVSETGILPRTHGSALFTRGETQGLVVTT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L+G  +++FM+HYNF P + GEV R+  P RREIGHG+LA RA+  VL
Sbjct: 361 LGTGDDEQMIDALTGMYKSNFMLHYNFPPYSVGEVGRVSGPGRREIGHGKLAWRALQAVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+RIVSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D  
Sbjct: 421 PAPTDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVMEDDGS 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GRLHIL
Sbjct: 481 YAVLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMKKALEQAKAGRLHIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK L+ ++ +     P++E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 541 GEMSKALTGAQ-EFSVHAPKIETMQIPVDKIREVIGSGGKVIREIVETSGAKVDINDDGV 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +K+AS+    I+ A +MI SI   PE  K+YKG VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 600 IKLASNDAEAIKRAYDMIYSIVAEPEEGKVYKGTVVKLVDFGAFVNFFGKRDGLVHVSQI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +R+   SDV+KEG  VWVKLL FDDRGK++L+MK+VDQ TG+ +
Sbjct: 660 ENKRLNHPSDVLKEGQDVWVKLLGFDDRGKVRLAMKMVDQATGQEL 705


>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
           flagellatus KT]
 gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
          Length = 714

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/685 (51%), Positives = 490/685 (71%), Gaps = 3/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I +    L LETG IARQ+DGAV+ +YG+TVVL +VV  R +K+GQDFFPLTV+YQE+TY
Sbjct: 8   ITYGQHELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+  VM  D E    +
Sbjct: 68  AAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEIDADI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +++ ASAAL +SG+PF GP+  A+V YING+YVLNP   +  + +LDL V+ T+ AVLM
Sbjct: 128 PAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTASQLKETALDLVVAATESAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA +L EDV+L ++++GH + + VI AI++LA    KEP      +  ++L  ++  
Sbjct: 188 VESEAKELPEDVMLGSVVYGHEQMQIVISAINELAAEVGKEPWDWAPPEPNTELIAKVEA 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAKVVRT 305
           +   D+  +  I  K  R  ++D+++ +++    +E +S +E  EI S+F +++AKVVR+
Sbjct: 248 LAGADINEAYKIKSKSARSSKLDEIRSRVLGELITETTSTSEANEIKSIFHNLEAKVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT  DEQ +D+
Sbjct: 308 QILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDA 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP   +F YT+R+
Sbjct: 368 LQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG  L+L+DAGVP+   VAGIAMGL+K+G+   +L+DI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAVLTDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT+SGITA+QMD+KI GI+  IM +AL QAK GRLHIL  M + + E   +
Sbjct: 488 LGDMDFKVAGTESGITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEAVGEQPQE 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L EF PR+  M I P++IR+VIG GG VIR + E+TG  ++I++DGT+KI  +S    E 
Sbjct: 548 LSEFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCTSAEAGEE 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A++ I +IT   EV ++Y G V+K++DFGA V     +DGL+HISQ++ +RV   +D +K
Sbjct: 608 AKKRIEAITAEVEVGQVYDGTVLKLLDFGAIVSLLPGKDGLLHISQIAHQRVNAVADFLK 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
           EG  V VK+L+ DD+G+++LS K +
Sbjct: 668 EGQVVKVKVLEVDDKGRVRLSAKAL 692


>gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas gardneri ATCC 19865]
 gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas gardneri ATCC 19865]
          Length = 704

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/697 (51%), Positives = 486/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTISELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+ + L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHRELQKVINVINELTVEAGTKPSTWVAPAKN-TALIN 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300
            + + +   L  +  + +K  R   I  +KK ++   +   +S  W+  E+   F +++ 
Sbjct: 244 ALKEAVGAQLSGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D 
Sbjct: 304 HTMRDSVLETKVRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRL+IL EMSK L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSKALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             RL+L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRLELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|220934183|ref|YP_002513082.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254782744|sp|B8GP06|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 693

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/685 (52%), Positives = 481/685 (70%), Gaps = 3/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    +  ETG IARQ+ GAVL    +TVVL T V  + +  G+DFFPLTVNYQERTY
Sbjct: 8   FQYGQHTVTFETGEIARQASGAVLVNMADTVVLVTAVGLKDVAQGRDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  VM  + E  P V
Sbjct: 68  AAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMNPEVDPDV 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ASAAL LSGLPF+GP+  A+V Y+NG YVLNP + E + S LDL V+GT+ AVLM
Sbjct: 128 PAMLGASAALALSGLPFKGPIGAARVGYLNGAYVLNPSMSELKHSDLDLVVAGTEKAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA  LSE+V+L A+++GH + +  I+ I++LA    K     +  ++   L+E ++ 
Sbjct: 188 VESEAKLLSEEVMLGAVMYGHEQMQAAIKVINELAAEAGKPAWDWVAPEENVALKEAVAA 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQAKVVRT 305
             + +L  +  I EK  R +Q++ L+  +V+  ++ E  + +  ++   F  ++ ++VR+
Sbjct: 248 ACEAELTAAYQIAEKQARNQQVNALRDAVVAKLATGEEGAPSAEKVKGAFGALEKRIVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQAIVV TLGT  D Q +++
Sbjct: 308 RVLKGEPRIDGRDTRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDRDAQLIEA 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G +R  FM+HYNF P  TGE   +G+P RREIGHGRLA+R +  V+P  A+ PY LR+
Sbjct: 368 IEGERRERFMLHYNFPPFCTGETGMVGSPKRREIGHGRLAKRGVQAVMPGEAECPYVLRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGL+K+GD F ++SDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFAVISDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G++A+QMD+KI GI+  IM  AL QAK GRLHIL +M+ VLSE R +
Sbjct: 488 LGDMDFKVAGSKDGVSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAVLSEPRTE 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  + PR   + I PD+IR+VIG GG  IR + E+TG  ++I DDGTVKIAS   A  + 
Sbjct: 548 VSAYAPRFTTLKIHPDKIRDVIGKGGATIRALTEETGTSIDISDDGTVKIASVDKAAGDE 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AR  I  +T   EV +IY+G+VVK+MDFGAFV     RDGLVHISQ+S ERV   SD + 
Sbjct: 608 ARRRIEELTADVEVGRIYEGRVVKIMDFGAFVTILPGRDGLVHISQISEERVESVSDRLT 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
           EGD V VK+L+ D +G+I+LSMK V
Sbjct: 668 EGDLVKVKVLEVDKQGRIRLSMKEV 692


>gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
           C-113]
          Length = 695

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/691 (51%), Positives = 486/691 (70%), Gaps = 15/691 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE+  RPL LETG IARQ+ GAV+  YGETVVL TVV  +   +G+DFFPLTVNYQERTY
Sbjct: 8   IEYGDRPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D E+ P +
Sbjct: 68  AAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSDSENDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            S++ ASAAL LSG+PF  P+  A+V YI+GQYVLNP L + ++ +LDL V+GT+ AVLM
Sbjct: 128 PSLIGASAALTLSGIPFATPIAAARVGYIDGQYVLNPTLSQMEESALDLVVAGTEKAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE EA +L E+++L +++FGH E + VI+ I +LA+   K      + D+ S +EEE  +
Sbjct: 188 VESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEAGK-----PAWDWQSPIEEEDLK 242

Query: 247 MIKEDLRVSCFIPEKY-VRCKQ-----IDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQ 299
               D+     + E Y VR KQ     + +L+  +V S    ++S W+  +++     ++
Sbjct: 243 SAIRDIG-EARVQEAYQVRSKQERQACLTELRNSIVGSLVPEDNSQWSREQVLEAMGALE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L    R+DGRD+  +R IS   GLL RTHGS+LF RG+TQ++V  TLGT  D
Sbjct: 302 KRLVREQILAGGERIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTERD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++ G +R  FM+HYNF P   GE   +G+P RREIGHGRLA+R+++ V+P    F
Sbjct: 362 AQVIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNAVVPDEESF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI  PVAGIAMGL+K+ D F +LSDI
Sbjct: 422 PYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEADRFAVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+E IM  AL QA+ GR HIL +M++++
Sbjct: 482 LGDEDHLGDMDFKVAGTEKGVTALQMDIKIDGITEEIMRTALTQAREGRFHILQKMNEII 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R ++ E+ PR+ +  I P++IR+VIG GG  IR + E+TG  ++I DDGTVKI S+ 
Sbjct: 542 STPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFSAD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A+ + A+  +  I    EV KIY+G+V ++MDFGAFV     +DGL+HISQ+S ERV  
Sbjct: 602 KADGQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERVKN 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SD + EGD + VK+L+ D +G+++LS+K +
Sbjct: 662 VSDKLSEGDIIRVKVLEVDKQGRVRLSVKAI 692


>gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 704

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/695 (50%), Positives = 486/695 (69%), Gaps = 6/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF+GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA+ LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+   +  
Sbjct: 185 VLMVESEADLLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMIAA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300
            + + + + L  +  + +K  R   I  +KK ++   +   +   W  G++   F +++ 
Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +L  KVR+DGR  +TVR ISA  G+L RTHGS+LF RG+TQAIV+ TLGT  D 
Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            D +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0070_08D07]
          Length = 695

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/677 (51%), Positives = 482/677 (71%), Gaps = 2/677 (0%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           +ET +IA+Q+ G  L + G TVV+ TVV  +S + GQDFFPLTVNYQE+ YA GKIPGG+
Sbjct: 17  IETNKIAKQTSGTALVSIGGTVVMTTVVGAKSARPGQDFFPLTVNYQEKAYAAGKIPGGF 76

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            RRE RP+E E L SR+IDR IRPLF K + NE QV+  V+  D +  P + +M+  SAA
Sbjct: 77  FRREGRPSEKETLTSRLIDRPIRPLFPKSFMNEVQVVCTVLSTDKDQDPDIAAMIGTSAA 136

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196
           L +SGLPFEGP+  A+V Y +G Y+LNP  +    G L++ V+GT++AVLMVE EA +LS
Sbjct: 137 LAISGLPFEGPIGAARVGYKDGAYLLNPGYEALKDGDLNMMVAGTEEAVLMVESEAKELS 196

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVS 255
           ED +L A+++GH E + VI +I + A  +  +E +    ++ S+    +++++  +L  +
Sbjct: 197 EDQMLGAVLYGHQEMQVVISSIKEFAADLGVQESVWAPPQENSESVVRVNEIVNTELGEA 256

Query: 256 CFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMD 315
             I +K  R   +  LK+K+++   S+ +  +EG+++S F  ++  +VR  +L+ + R+D
Sbjct: 257 YKIVDKLERQNAVQSLKEKLLASALSDDNGLSEGDLLSAFSKLEKSLVRERVLNGEPRID 316

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GRD +TVR I  +VG+L +THGS+LF RG+TQA+VV TLGT  D   +D+L GT ++ FM
Sbjct: 317 GRDLKTVRAIEVEVGVLPKTHGSALFTRGETQALVVATLGTLRDAAIIDALEGTYKDQFM 376

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
           +HYNF P + GE   MG P RRE+GHG+LARR +  VLP   +FPYTLR+VSEITES+GS
Sbjct: 377 LHYNFPPYSVGETGMMGGPKRREVGHGKLARRGVSAVLPDPDEFPYTLRVVSEITESNGS 436

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
           SSMA+VCG+SLALMDAGVP++ PVAG+AMGLVK+G+ + +L+DI GDEDHLG MDFKVAG
Sbjct: 437 SSMASVCGTSLALMDAGVPLAAPVAGVAMGLVKEGNRYAVLTDILGDEDHLGDMDFKVAG 496

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
           +  G+TA+QMD+KI GI+E IM +AL QA   RLHIL +M+KV+S+SR  L E  P +E 
Sbjct: 497 SSKGVTALQMDIKISGITEEIMEVALSQAYEARLHILEQMNKVISQSRESLSENAPSMET 556

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           M + PD+IR++IG GG  IR IVE+TGA+V+IDDDG V+I + + A  +AA   I  IT 
Sbjct: 557 MKVHPDKIRDIIGKGGATIRSIVEETGAEVDIDDDGLVRIYAENGASKDAAVNKIEEITA 616

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV KIY G+V +++DFGAFV     +DGL+HISQ++ ERV   +D + EG  V V +L
Sbjct: 617 EAEVGKIYDGKVARIVDFGAFVTILPGKDGLLHISQIADERVESVTDYLSEGQKVEVVVL 676

Query: 676 DFDDRGKIKLSMKVVDQ 692
           D D RG+IKLS+K V+ 
Sbjct: 677 DLDQRGRIKLSIKEVEN 693


>gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus
           Ueda107]
 gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus
           Ueda107]
          Length = 710

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/688 (50%), Positives = 484/688 (70%), Gaps = 11/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++  + + LETGRIARQ+ GAVL + GE  VL TVV  +    GQDFFPL+V+YQE+ 
Sbjct: 7   KFQYGNQTVTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSVHYQEKA 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGGY +RE RP+E E L SR+IDR IRPLF + + NE QVI  V+  D +  P 
Sbjct: 67  YAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVSTDKKQDPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAV 185
           + +M+  SAAL +SG+PF GP+  A+V Y  G+ Y+LNP   + + S LD+ V+GT+DAV
Sbjct: 127 IAAMIGTSAALAVSGIPFNGPIGAARVGYTQGEGYILNPSYKQLETSELDMVVAGTKDAV 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKL 240
           LMVE EA +L ED++L A+++GH E + VI+A ++LA+   K     +P+  +++  + +
Sbjct: 187 LMVESEAKELPEDIMLGAVLYGHQEMQAVIQACAELARDAGKARWDWQPVPENTELKTAI 246

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +      I +  R++    +K  R  ++ +L+ + V+ F++E S  +   + S+F  ++ 
Sbjct: 247 KAAFGVAIGDAYRIT----DKAERYNRLGELRSEAVAQFATEESGISADAVKSLFGTLEY 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR+ ++  + R+DGRD++TVR I+  VG+L + HGS+LF RG+TQA+VV TLG   D 
Sbjct: 303 NIVRSRIVANEPRIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNARDV 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G ++  F++HYNF P + GE  RMG+  RREIGHGRLA+R +  VLP+   FP
Sbjct: 363 QIIDQLEGEKKEAFLLHYNFPPYSVGECGRMGSTGRREIGHGRLAKRGVQAVLPKAESFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YTLR+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ + F +L+DI 
Sbjct: 423 YTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT SG+TA+QMD+KI GI+E IM +AL+QA   RLHIL EM+KVLS
Sbjct: 483 GDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAARLHILGEMNKVLS 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           +SR  + E  PR E + I PD+IR++IG GG  IR I E+T + ++IDDDGTVK+ +   
Sbjct: 543 QSRTAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETNSSIDIDDDGTVKVYADDN 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++AA   I +I    E+  IY+G VV+++DFGAFV+F   +DGLVHISQ++ ERV   
Sbjct: 603 EALQAALNRIGAIVAEAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIADERVNNV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SD +KEG  V VK LD D RG+IKLS+K
Sbjct: 663 SDYLKEGQVVKVKCLDVDQRGRIKLSIK 690


>gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae]
          Length = 712

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/702 (50%), Positives = 492/702 (70%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TV+LATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR IRPLF + Y NE QVII+V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL L+G+PF GPV  A+V YI+GQYVLNP   + + S LDL V+
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSE+V+L A++FGH++ K VIEAI  L +   K  +   +   ++
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-----EGEIVS 293
            L   +SQ+ +  LR +    +K  R +++  +  ++     +E ++ N       E+ S
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D+++G  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+
Sbjct: 361 LGTARDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVM 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+   VAGIAMGL+K+G+ F
Sbjct: 421 PSLEAFPYTIRLVSEITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK GR HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +   R +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G V
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   +  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            ERV   +D +KEG  V VK+L+ DDRG++KLSMK      G
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEG 702


>gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81306090|sp|Q4UW98|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81793552|sp|Q8P7V1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 704

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 484/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L T V  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+ + L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKN-TALIS 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300
            + + +   L  +  + +K  R   I  +KK ++   +   +S  W+  E+   F +++ 
Sbjct: 244 ALKEAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D 
Sbjct: 304 HTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EMSK L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|257096716|sp|B0RRB8|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 704

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 484/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L T V  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+ + L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKN-TALIS 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300
            + + +   L  +  + +K  R   I  +KK ++   +   +S  W+  E+   F +++ 
Sbjct: 244 ALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D 
Sbjct: 304 HTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EMSK L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
           pv. campestris]
          Length = 735

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 484/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L T V  ++ ++GQDFFPLTV+YQE
Sbjct: 36  TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQE 95

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 96  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 155

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 156 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANA 215

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+ + L  
Sbjct: 216 VLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKN-TALIS 274

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300
            + + +   L  +  + +K  R   I  +KK ++   +   +S  W+  E+   F +++ 
Sbjct: 275 ALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELEY 334

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D 
Sbjct: 335 HTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 394

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 395 QVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 454

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI 
Sbjct: 455 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 514

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EMSK L+
Sbjct: 515 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALT 574

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 575 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 634

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 635 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 694

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 695 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 731


>gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 698

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/689 (50%), Positives = 486/689 (70%), Gaps = 8/689 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++ G P+ +ETG +ARQ+ G+V+    +TVVL T    +  K  Q FFPLTVNYQE+T
Sbjct: 7   QFDFGGVPVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTVNYQEKT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPG + +RE RP+E E L +R+IDR IRPLF K + NE Q++  V+  + E  P 
Sbjct: 67  YAAGKIPGSFFKREGRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLNPEVDPE 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186
           V +M+  SAAL +SG+PF+GP+  AQV Y +G+Y+LNP + D +   L L V+GT+DAVL
Sbjct: 127 VPAMIGTSAALSISGIPFDGPIGAAQVGYRDGEYLLNPSKTDLETSDLALTVAGTEDAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EAN LSED++L A++FGH + + V++A+ +LA+    E  V +  + + +LE+ ++
Sbjct: 187 MVESEANCLSEDIMLGAVMFGHEKMQAVVQAVKELAEEVGTERWVFEEAEANVELEQAVA 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EIVSVFEDIQAK 301
              ++DL  +  I +K  R ++I +++  +V   ++  +   EG    E+ SVF  ++  
Sbjct: 247 SAAQQDLGEAYTIADKMDRYQRIGEIRDAVVEQLAA--AEGEEGPEADEVKSVFAKLEKN 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ +L  + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT  D Q
Sbjct: 305 IVRSRILAGEKRIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTTLGTERDAQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G  +++F+ HYNF P   GE   +G+P RREIGHG+LA+R +  V+P    FPY
Sbjct: 365 LIDDLAGEYKDNFLFHYNFPPYCVGETGFIGSPKRREIGHGKLAKRGVQAVMPAQDDFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R VSEITES+GSSSMA+VCGSSLA+MDAGVP+  PVAGIAMGL+K+GD F +L+DI G
Sbjct: 425 TIRAVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGDQFAVLTDILG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGTD G+TA+QMD+KI GI+  IM  AL++AK GRLHIL EM+K L +
Sbjct: 485 DEDHLGDMDFKVAGTDGGVTALQMDIKIQGITREIMAQALEEAKAGRLHILGEMAKELDK 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR   + I PD+I +VIG GG  IRGI E+TGA V+I+DDGT+KIAS    
Sbjct: 545 PREELSQHAPRYITVKIHPDKIGDVIGKGGATIRGITEETGASVDIEDDGTIKIASVKAE 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + E A++M+  +T   EV KIY+G+VV + +FGAFV+    +DGLVHISQ++ ERV   +
Sbjct: 605 DGERAKKMVEELTAEIEVGKIYEGKVVGIKEFGAFVNILPGKDGLVHISQIAQERVENVT 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           D + EG  V VK+L+ D +G+++LSMK V
Sbjct: 665 DHLSEGQEVRVKVLEVDRQGRVRLSMKEV 693


>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 712

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/702 (50%), Positives = 490/702 (69%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TV+LATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR IRPLF + Y NE QVII+V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL L+G+PF GPV  A+V YI+GQYVLNP   + + S LDL V+
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSE+V+L A++FGH++ K VIEAI  L +   K  +   +   ++
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-----EGEIVS 293
            L   +SQ+ +  LR +    +K  R +++  +  ++     +E ++ N       E+ S
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+ F
Sbjct: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK GR HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +   R +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G V
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   +  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            ERV   +D +KEG  V VK+L+ DDRG++KLSMK      G
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEG 702


>gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani
           ATCC 19707]
 gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
 gi|123593842|sp|Q3J9C0|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani
           ATCC 19707]
 gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
          Length = 695

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/688 (50%), Positives = 481/688 (69%), Gaps = 9/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE+  R L LETG IARQ+ GAV+  YGETVVL TVV  +   +G+DFFPLTVNYQERTY
Sbjct: 8   IEYGDRSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D E+ P +
Sbjct: 68  AAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSENDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            S++ ASAAL LSG+PF  P+  A+V YI+GQYVLNP L + ++ +LDL V+GT+ AVLM
Sbjct: 128 PSLIGASAALALSGIPFTTPIAAARVGYIDGQYVLNPTLGQMEKSALDLVVAGTEKAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI----VIDSKDFSKLEEE 243
           VE EA +L E+++L +++F H E + VI+AI +LA+   K        I+ +D     +E
Sbjct: 188 VESEAQELPEEIMLGSVMFAHQEMQVVIQAIRELAEEAGKPAWDWKPPIEEEDLKSAVQE 247

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKV 302
           + +   ++   +  I  K  R   + +L+  +V S    E+S W+  +++     ++ ++
Sbjct: 248 VGEARAQE---AYQIRSKQERQASLAELRNSIVESLVPEENSRWSREQVLEAIGALEKRL 304

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L    R+DGRD+  +R I+   GLL RTHGS+LF RG+TQ++V  TLGT  D Q 
Sbjct: 305 VREQILSGGERIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERDAQV 364

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D++ G +R  FM+HYNF P   GE   +G+P RREIGHGRLA+R+++ V+P    FPY 
Sbjct: 365 IDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNGVVPDEESFPYV 424

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI  PVAGIAMGL+K+ D F +LSDI GD
Sbjct: 425 IRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEKDRFAVLSDILGD 484

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM  AL QA+ GR +IL +M++++S  
Sbjct: 485 EDHLGDMDFKVAGTEKGITALQMDIKIDGITEEIMRTALSQAREGRFYILQKMNEIISTP 544

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++ E+ PR+ +  I P++IR+VIG GG  IR + E+TG  ++I DDGTVKI S+  A+
Sbjct: 545 RQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFSADKAD 604

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A+  +  I    EV KIY+G+V ++MDFGAFV     +DGL+HISQ+S ERV   SD
Sbjct: 605 GQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERVKNVSD 664

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            + EGD + VK+L+ D +G+++LS+K +
Sbjct: 665 KLSEGDVIRVKVLEVDKQGRVRLSVKAI 692


>gi|182680754|ref|YP_001828914.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M23]
 gi|187611441|sp|Q87EV0|PNP_XYLFT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704834|sp|B2I730|PNP_XYLF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182630864|gb|ACB91640.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M23]
 gi|307579218|gb|ADN63187.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 700

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/692 (51%), Positives = 480/692 (69%), Gaps = 4/692 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 65  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEE 243
           VLMVE EA  LSE+V+L A+IFGH E + VI+ I  L A+ C +    +       L   
Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDALVIA 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAK 301
           + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++ +
Sbjct: 245 LKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEYR 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D Q
Sbjct: 305 TMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +FPY
Sbjct: 365 VIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI G
Sbjct: 425 TIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+ 
Sbjct: 485 DEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALAA 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L ++ PR+  + I PD+IR+VIG GG  I+ I ++TG +++I DDGT+ IAS + A
Sbjct: 545 PRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNNA 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +  
Sbjct: 605 AAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERVG 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 665 DKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|28198126|ref|NP_778440.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           Temecula1]
 gi|28056186|gb|AAO28089.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1]
          Length = 719

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/692 (51%), Positives = 480/692 (69%), Gaps = 4/692 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 24  TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 83

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 84  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 143

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT +A
Sbjct: 144 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 203

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEE 243
           VLMVE EA  LSE+V+L A+IFGH E + VI+ I  L A+ C +    +       L   
Sbjct: 204 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDALVIA 263

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAK 301
           + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++ +
Sbjct: 264 LKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEYR 323

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D Q
Sbjct: 324 TMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQ 383

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +FPY
Sbjct: 384 VIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFPY 443

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI G
Sbjct: 444 TIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILG 503

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+ 
Sbjct: 504 DEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALAA 563

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L ++ PR+  + I PD+IR+VIG GG  I+ I ++TG +++I DDGT+ IAS + A
Sbjct: 564 PRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNNA 623

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +  
Sbjct: 624 AAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERVG 683

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 684 DKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 715


>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
           Nc4]
 gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
           Nc4]
          Length = 711

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/696 (51%), Positives = 484/696 (69%), Gaps = 25/696 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE+  R L LETG IARQ+ GAV+  YGET VL T V  +   +G+DFFPLTVNYQERTY
Sbjct: 24  IEYGDRSLVLETGCIARQATGAVVVHYGETAVLVTAVGVKEAIEGRDFFPLTVNYQERTY 83

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D E+ P +
Sbjct: 84  AAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVISSDGENDPDI 143

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            S++ ASAAL LSG+PF  P+  A+V YI+G+YVLNP L + ++ +LDL V+GT+ AVLM
Sbjct: 144 PSLIGASAALALSGIPFTTPIAAARVGYIDGRYVLNPTLSQMEKSALDLVVAGTEKAVLM 203

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE EA +L E+++L ++IFGH E + VI+AI +LA+   K P      D+S   E+    
Sbjct: 204 VESEARELPEEIMLGSVIFGHQEMQAVIQAIRELAEEAGKAPW-----DWSTPVED---- 254

Query: 248 IKEDLRVSCF------IPEKY-VRCKQ-----IDDLKKKMVSYF-SSEHSSWNEGEIVSV 294
             EDL  + +      + E Y VR KQ     + + +  +V      E   W++ +++  
Sbjct: 255 --EDLMSAVWDCGEARLQEAYQVRSKQDRQASLAEARSFIVERLVPEEDPQWSKEQVLEA 312

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
              ++ ++VR  +L    R+DGRD+++VR I+   GLL R HGS+LF RG+TQ++V  TL
Sbjct: 313 VSALEKRLVREQILAGGERIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTL 372

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D++ G +R  FM+HYNF P   GE   +GAP RREIGHGRLA+R+++ V+P
Sbjct: 373 GTERDAQVIDAIEGERRERFMLHYNFPPYCVGETGFVGAPKRREIGHGRLAKRSLNAVVP 432

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPY +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI++PVAGIAMGL+K+ D F 
Sbjct: 433 DEESFPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPITEPVAGIAMGLIKERDQFA 492

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA+ GRLHIL +
Sbjct: 493 VLSDILGDEDHLGDMDFKVAGTGKGVTALQMDIKIDGITEEIMRTALSQAREGRLHILQK 552

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++V+S  R ++ E+ PR+ +  I P++IR+VIG GG  IR + E+TG  ++I DDGTVK
Sbjct: 553 MNEVISAPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDITDDGTVK 612

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS  A+ + AR  +  I    EV KIY+G+V ++MDFGAFV     +DGL+HISQ+S 
Sbjct: 613 IFSSDKADGQEARRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISD 672

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ERV   SD + EGD + VK+L+ D +G+++LS+K +
Sbjct: 673 ERVKNVSDKLSEGDIIRVKVLEVDKQGRVRLSIKAI 708


>gi|319787423|ref|YP_004146898.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465935|gb|ADV27667.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 701

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/695 (51%), Positives = 486/695 (69%), Gaps = 6/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ G+V+    +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGSVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE RPTE E LISR+IDR IRPLF + YKNE Q+I  VM  + E  
Sbjct: 65  KFYAGGRIPGGFFKREGRPTEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             + +++ ASAAL L+G PF+GP+  A+V Y +GQY+LNP   E  +  L+L V+GT +A
Sbjct: 125 GDIPALIGASAALSLAGTPFKGPIGAAKVGYKDGQYILNPSASELAESKLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI AI++L      +P   V  +K+   L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELVAEAGTKPSQWVAPAKN-EALIA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300
            + + +   L  +  I +K  R   I  +KK +    +   ++  WN  E+   F +++ 
Sbjct: 244 ALKEAVGNRLADAFQIRDKLERRDAIAAIKKDVAEQLAGRVAAEGWNPAELGKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +LD KVR+DGR  +TVR IS + G+L RTHGS++F RG+TQAIVV TLGT  D 
Sbjct: 304 RTMRDSVLDTKVRIDGRALDTVRPISVKTGVLPRTHGSAMFTRGETQAIVVTTLGTTRDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QIIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSIEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI 
Sbjct: 424 YTVRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  AL+QAK GRLHIL EM+K L+
Sbjct: 484 GDEDHLGDMDFKVAGTADGVSALQMDIKIEGITEEIMKQALEQAKAGRLHILGEMAKALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L E+ PR+  + I PD+IR VIG GG  I+GI ++TG +++I DDGT+ IAS + 
Sbjct: 544 APRAELSEYAPRLLTIKIHPDKIREVIGKGGATIQGITKETGTQIDIQDDGTIVIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 AAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SD +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 664 SDKLKEGDVVKVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 720

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/691 (50%), Positives = 473/691 (68%), Gaps = 13/691 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+DGAVL    +TVVL T V  +    G+ FFPLTVNYQERTY
Sbjct: 30  FQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTY 89

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L  R+IDR IRPLF + + NE QV+  V+  + E    +
Sbjct: 90  AAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADI 149

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ ASAAL +SG+PF+GP+  A+V Y +G+Y+LNP  +E   S LDL V+GT++AVLM
Sbjct: 150 PALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENAVLM 209

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           VE EANQL E+ +L A+++GH + +  I+AI++L     K      P   D+     LE 
Sbjct: 210 VESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAA----LET 265

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQ 299
            +  ++ +DL  +  IPEK  R  +I +L+++ V        E   W E ++   F+ ++
Sbjct: 266 AIKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDAFKGLE 325

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  +L  + R+DGRD+ TVR I  +VG L RTHGS++F RG+TQA+VV TLGT  D
Sbjct: 326 KDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRD 385

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++ G ++  FM+HYNF P   GE   MG P RREIGHG+LA+R I  V+P     
Sbjct: 386 AQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDC 445

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+K+ + F +LSDI
Sbjct: 446 PYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSDI 505

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+  IM  AL+QA+ GRLHIL EM+  +
Sbjct: 506 LGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAI 565

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R ++ E+ PR+  + I PD+IR+VIG GG  IR + E+TG  ++I DDG V IAS+ 
Sbjct: 566 SGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDISDDGKVTIASAD 625

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + AR  I  +T   EV  +Y+G+V K+MDFGAFV+    RDGLVHISQ+S ERV +
Sbjct: 626 KAAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVNILPGRDGLVHISQISNERVER 685

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D +KEGDTV VK+L+ D +G+I+LSMK V
Sbjct: 686 VGDYLKEGDTVRVKVLEVDRQGRIRLSMKAV 716


>gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73]
 gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas
           albilineans]
          Length = 702

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/695 (50%), Positives = 484/695 (69%), Gaps = 6/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + + + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAGTSNA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSEDV+L A+ FGH E + VI AI++L      +P   V  +K+ + +  
Sbjct: 185 VLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTAEAGTKPSDWVAPAKNAAMIVA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQA 300
            + + +   L  +  + +K  R   I  +KK +++  +   ++  W   ++   F +++ 
Sbjct: 245 -LKEAVGGQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAPRATAENWVAADLAKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +L  KVR+DGR  +TVR IS + G+L RTHGS+LF RG+TQAIVV TLGT  D 
Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTMEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+DF++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  AL QAK GRLHIL EM+  L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 SPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            D +KEGD V VK+L+ D +G+I+LSMK V++  G
Sbjct: 664 GDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEG 698


>gi|187471095|sp|Q0A7A1|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 698

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/691 (50%), Positives = 473/691 (68%), Gaps = 13/691 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+DGAVL    +TVVL T V  +    G+ FFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L  R+IDR IRPLF + + NE QV+  V+  + E    +
Sbjct: 68  AAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ ASAAL +SG+PF+GP+  A+V Y +G+Y+LNP  +E   S LDL V+GT++AVLM
Sbjct: 128 PALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           VE EANQL E+ +L A+++GH + +  I+AI++L     K      P   D+     LE 
Sbjct: 188 VESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAA----LET 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQ 299
            +  ++ +DL  +  IPEK  R  +I +L+++ V        E   W E ++   F+ ++
Sbjct: 244 AIKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDAFKGLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  +L  + R+DGRD+ TVR I  +VG L RTHGS++F RG+TQA+VV TLGT  D
Sbjct: 304 KDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++ G ++  FM+HYNF P   GE   MG P RREIGHG+LA+R I  V+P     
Sbjct: 364 AQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDC 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+K+ + F +LSDI
Sbjct: 424 PYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+  IM  AL+QA+ GRLHIL EM+  +
Sbjct: 484 LGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R ++ E+ PR+  + I PD+IR+VIG GG  IR + E+TG  ++I DDG V IAS+ 
Sbjct: 544 SGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDISDDGKVTIASAD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + AR  I  +T   EV  +Y+G+V K+MDFGAFV+    RDGLVHISQ+S ERV +
Sbjct: 604 KAAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVNILPGRDGLVHISQISNERVER 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D +KEGDTV VK+L+ D +G+I+LSMK V
Sbjct: 664 VGDYLKEGDTVRVKVLEVDRQGRIRLSMKAV 694


>gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 706

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/691 (50%), Positives = 484/691 (70%), Gaps = 2/691 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+A+  +T V  +VV  +   +GQDFFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +   SP +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPNVSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++M+  SAAL +SG+PF GP+  A+V +IN Q+VLNP  ++ ++  LDL V+GT+DAVLM
Sbjct: 128 ITMIGTSAALAISGIPFNGPIGAARVGFINDQFVLNPSNVELEESRLDLVVAGTKDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA++LSE+ +L A++FGH++ + VI AI++ A   A      I  ++ + L+ ++++
Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQTVINAINEFAAEVATPAWDWIAPEENTVLKNKIAE 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + +  L  +  I EK  R  +I ++  ++     SE    N  E+ ++F D++  VVR  
Sbjct: 248 LAEAKLVEAYQITEKMARYDRIHEIADEVNEVLLSEDLEVNTKEVHTIFHDLEKTVVRRS 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q +D L
Sbjct: 308 IIAGNPRIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDEL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +FPYT+R+V
Sbjct: 368 TGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDEFPYTVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R+HIL+ M   ++  R  +
Sbjct: 488 GDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARMHILSVMDNAINAPRDDI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            EF PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A
Sbjct: 548 SEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATDGLQAKEA 607

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
              I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ+S ERV K SD +KE
Sbjct: 608 IRRIEEITADVEVGRIYTGKVTRIVDFGAFVSVIGTKEGLVHISQISQERVEKVSDYLKE 667

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G  V VK+L+ D +G+I+LSMK   Q   +P
Sbjct: 668 GQEVPVKVLEIDRQGRIRLSMKEAVQPAEQP 698


>gi|15616978|ref|NP_240191.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219681731|ref|YP_002468117.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|219682286|ref|YP_002468670.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471431|ref|ZP_05635430.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|11386962|sp|P57454|PNP_BUCAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782710|sp|B8D9F8|PNP_BUCA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782711|sp|B8D7R0|PNP_BUCAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25311798|pir||E84973 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10039043|dbj|BAB13077.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
 gi|219622019|gb|ACL30175.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624574|gb|ACL30729.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|311086110|gb|ADP66192.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086683|gb|ADP66764.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311087269|gb|ADP67349.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 707

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/686 (50%), Positives = 490/686 (71%), Gaps = 2/686 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ++ AV+A+  ET V  TVV  + +  GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTITLETGVIARQANAAVMASMDETAVFVTVVGQKKIHTGQKFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+ENEIL +R+IDR +RPLF K + NE Q+I  V+  + + +P 
Sbjct: 68  YAAGRIPGGFFRREGRPSENEILTARLIDRPLRPLFPKKFLNEIQIIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           ++S++ ASAAL LSG+PF GPV  A+V YIN QY+LNP  D+    SLDL VSGTQ+A+L
Sbjct: 128 IISIIGASAALSLSGIPFYGPVGAARVGYINNQYILNPISDDMKNSSLDLVVSGTQNAIL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE E+  LSE+ +L AIIFGH + + VI  I  L+   +K P VI   + +K LE ++ 
Sbjct: 188 MVEAESKILSEEKILGAIIFGHQQQQVVINNIRSLSNEASKLPWVISYPETNKTLELKII 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
              ++++  +  I  K  R ++++ +K+ ++  F  E+S+ +  EI  +F+ I+ KVVR 
Sbjct: 248 NSFEKNISDAYVIFNKQDRIEKLNSIKENIIKLFLDENSNIDTLEIEDIFQKIEKKVVRK 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQ++V VTLGT  D Q +D 
Sbjct: 308 RILSNQTRIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLGTSRDAQNLDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + ++F+ HYNF P + GE+  +G+P RREIGHGRLA+R++  V+P    FPYT+R+
Sbjct: 368 LLGDRIDNFLFHYNFPPYSVGEIGMVGSPKRREIGHGRLAKRSLLAVMPTLENFPYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGI+MGLVK+G+  ++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGNQHVLLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT+ GITA+QMDMKI GI+  I+  AL +A+  RLHILN M++ L+ESR +
Sbjct: 488 LGDMDFKVAGTEEGITALQMDMKIEGITNEIIHSALNEARLARLHILNVMNQALNESRSE 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+ I+ I P++I++VIG GG VIR + E+TG  + I+DDGTVKI+S+   + + 
Sbjct: 548 ISEFAPRIHIIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVKISSTVKEKAKN 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I+ IT   EV +IY G+V +++DFGAFV     ++GLVHISQ+S +RV K S+ +K
Sbjct: 608 AIRRIKEITAEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQISDKRVDKVSNHLK 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVD 691
               + VK+L+ D +G+++LS+K +D
Sbjct: 668 IDQIISVKVLEIDRQGRLRLSIKEID 693


>gi|170729437|ref|YP_001774870.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M12]
 gi|226704835|sp|B0U1R2|PNP_XYLFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167964230|gb|ACA11240.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M12]
          Length = 700

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/693 (51%), Positives = 479/693 (69%), Gaps = 6/693 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 65  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      EP   V  +K+   L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTEPSDWVPPAKN-DALVI 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300
            + ++I   L  +  I EK  R   I  +K  ++   +   E   WN  E++  F +++ 
Sbjct: 244 ALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D 
Sbjct: 304 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R G   RREIGHGRLARR +  V+P   +FP
Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+
Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS + 
Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVNN 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV + 
Sbjct: 604 AAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli
           AAC00-1]
 gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1]
          Length = 758

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/707 (49%), Positives = 496/707 (70%), Gaps = 14/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGDKTVVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA QLSED++L A++FGH + +  I AI +L +   K     +P   D 
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDAGKPVWDWQPAAKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              +K+    +Q+ +E LR +  I  K  R + + +    ++    +E + ++  ++ ++
Sbjct: 243 PFIAKV----TQLAEEKLRAAYQIRSKQARTQALREASASVLESLKAEGADFDAVKVEAL 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             DI+AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TL
Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D+L+G   + FM HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP
Sbjct: 359 GTERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F 
Sbjct: 419 TKEEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  RLHIL +
Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + E++ ++  F P++  M I P++IR+VIG GG VIR + E+TG ++NID+DGT+ 
Sbjct: 539 MQEAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDEDGTIT 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS+  A+ + A+  I  IT   E+ KIY+G VVK++DFGA ++    +DGL+HISQ++ 
Sbjct: 599 IASTDSAKADEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQ---NTGKP 697
           ERV K +D + EG  V VK+L+ D++G++KLSM+ ++D+   ++G+P
Sbjct: 659 ERVEKVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGDSGRP 705


>gi|194366584|ref|YP_002029194.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
           maltophilia R551-3]
 gi|226702692|sp|B4SQR6|PNP_STRM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194349388|gb|ACF52511.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
           maltophilia R551-3]
          Length = 702

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/698 (50%), Positives = 481/698 (68%), Gaps = 12/698 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L + V  +S ++GQDFFPLT +YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + E  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             + +++ ASAAL L+G PF+GP+  A+V Y +G+Y+LNP + E  +  L+L V+GT +A
Sbjct: 125 GDIPALIGASAALSLAGTPFKGPIAAAKVGYKDGEYILNPTVSELKESQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FSK 239
           VLMVE EA  LSEDV+L A+ FGH E + VI AI++L      +P   ++        S 
Sbjct: 185 VLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNTALISA 244

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           ++E +   + E  +V     +K  R   I  +KK +V   +   ++  WN  E+   F +
Sbjct: 245 VQEAVGPRLGEAFQVR----DKLQRRDAISAIKKDVVESLAGRVAAEGWNPAELSKEFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R  +LD KVR+DGR  +TVR I+ +  +L RTHGSSLF RG+TQAIV +TLGT 
Sbjct: 301 LEYSTMRNSVLDTKVRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D++SG  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P   
Sbjct: 361 RDGQVIDAVSGEYKENFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+GD F++LS
Sbjct: 421 SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDRFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GI+A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S++RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            K  DV+KEGD V VK+L+ D +G+I+LSMK V++  G
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEG 698


>gi|187611440|sp|Q9PGQ9|PNP_XYLFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 700

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/693 (51%), Positives = 481/693 (69%), Gaps = 6/693 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ++GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 65  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M+ ASAAL L+G+PF+GP+  A++ Y +GQY+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPTVSELKKSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   V  +K+   L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300
            + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++ 
Sbjct: 244 ALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D 
Sbjct: 304 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +FP
Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+
Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS + 
Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIIIASVNN 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV + 
Sbjct: 604 AAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|15836844|ref|NP_297532.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           9a5c]
 gi|9105050|gb|AAF83052.1|AE003877_7 polynucleotide phosphorylase [Xylella fastidiosa 9a5c]
          Length = 719

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/693 (51%), Positives = 481/693 (69%), Gaps = 6/693 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ++GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 24  TKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 83

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 84  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 143

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M+ ASAAL L+G+PF+GP+  A++ Y +GQY+LNP + E + S L+L V+GT +A
Sbjct: 144 GDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPTVSELKKSQLELVVAGTANA 203

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   V  +K+   L  
Sbjct: 204 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 262

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300
            + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++ 
Sbjct: 263 ALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 322

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D 
Sbjct: 323 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 382

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +FP
Sbjct: 383 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFP 442

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI 
Sbjct: 443 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 502

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+
Sbjct: 503 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 562

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS + 
Sbjct: 563 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIIIASVNN 622

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV + 
Sbjct: 623 AAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 682

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 683 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 715


>gi|71276358|ref|ZP_00652635.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Dixon]
 gi|71162820|gb|EAO12545.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Dixon]
          Length = 700

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/693 (51%), Positives = 479/693 (69%), Gaps = 6/693 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 65  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   V  +K+   L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300
            + ++I   L  +  I EK  R   I  +K  ++   +   E   WN  E++  F +++ 
Sbjct: 244 ALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D 
Sbjct: 304 RTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R G   RREIGHGRLARR +  V+P   +FP
Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+
Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS + 
Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVNN 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV + 
Sbjct: 604 AAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
 gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
          Length = 710

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/693 (50%), Positives = 495/693 (71%), Gaps = 3/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +  ++     LKLETG +ARQ+DGAV+ +YGETVVL TVV ++++K+GQDFFPLT
Sbjct: 5   MFNKVSKSMKLGAHELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+ENEIL+ R+IDR +RPLF K + N+ Q++  V+  
Sbjct: 65  VDYQEKTYAAGKIPGGFFKREGRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSS 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    + +++ ASAAL +SG+PF GP+   +V Y++G+YV+NP   + Q S LDL V+
Sbjct: 125 DSEIDADIPAIIGASAALSISGIPFYGPIGATKVGYVDGEYVINPTKTQLQESELDLVVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EA +LSE V+LDA++ GH   K VI+ I+  AK  AK+P   ++ + ++
Sbjct: 185 GTKDAVLMVESEAKELSEKVMLDAVLAGHKAAKDVIKLINDFAKDSAKDPWEWNAPEPNQ 244

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
            L  ++S++ ++DL  +  I  K  R ++I ++K K+ +   +E     E  E+   F +
Sbjct: 245 ELISKISKLAEKDLSKAFSIKLKSERSQKISEIKDKVQAELITEDMGTLEVNEVNKEFFN 304

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR+ +LD + R+DGRD+ TVR I     +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 305 LEAKIVRSKILDGEPRIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTP 364

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G   + FM+HYNF P +TGE  R+G+P RREIGHGRLA+RA+  VLP+  
Sbjct: 365 RDAQIIDALQGEYTDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALLAVLPEQE 424

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEI ES+GSSSMA+VCG  +A++DAGVP+   VAGIAMGL+K+ +   IL+
Sbjct: 425 DFDYTIRLVSEIMESNGSSSMASVCGGCMAMLDAGVPLKSHVAGIAMGLIKEDNRVAILT 484

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+  IM +AL+QAK GR HIL+ M K
Sbjct: 485 DILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITTEIMQVALKQAKEGREHILDLMKK 544

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  SR +L ++ PR+  + I PD+IR+VIG GG VI+ + E+T   ++I DDG VK+A 
Sbjct: 545 ALKSSRTELSKYAPRIMTLNIHPDKIRDVIGKGGAVIKALTEETNTTIDITDDGLVKVAC 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  E + A + I+ IT   EV++IY G+VVK++DFGA V     +DGL+HISQ++ ERV
Sbjct: 605 TSGEEGQLAIDRIKEITADVEVDQIYDGKVVKILDFGAIVQLIPGKDGLLHISQIAHERV 664

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               D + EGD V VK+++ D +GK+++S K +
Sbjct: 665 KSVKDHLSEGDEVKVKVIEVDQKGKVRVSAKAL 697


>gi|71898659|ref|ZP_00680829.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71731606|gb|EAO33667.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 700

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/693 (51%), Positives = 480/693 (69%), Gaps = 6/693 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 65  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   V  +K+   L  
Sbjct: 185 VLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKN-DALVI 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQA 300
            +  +I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++ 
Sbjct: 244 ALKGVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +LD +VR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D 
Sbjct: 304 RTMRDALLDTEVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +FP
Sbjct: 364 QVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+
Sbjct: 484 GDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALA 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR+VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 APRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVNN 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV + 
Sbjct: 604 AAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 664 GDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|75434649|sp|Q5GXV3|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123739068|sp|Q2P0X5|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704832|sp|B2SVJ9|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 704

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 485/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + D     L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++LA     +P   V  +K+   +  
Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELAVEAGTKPSDWVAPAKNDGMIAA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300
            + + + + L  +  + +K  R   I  +KK ++   +   +   W  G++   F +++ 
Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D 
Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas
           arsenicoxydans]
 gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
          Length = 710

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/697 (51%), Positives = 488/697 (70%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+II+VM  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY+LNP   + + S +DL V+
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237
           GT+ AVLMVE EA QLSE+V+L A++FGH++ K VI+AI  L +   K  +     +K+ 
Sbjct: 181 GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKN- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIV 292
             L   ++   +E LR +    +K  R  ++ D   ++ +  ++E +S      +  E+ 
Sbjct: 240 EALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVG 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           ++  D++AK+VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ 
Sbjct: 300 NILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIA 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   
Sbjct: 360 TLGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAA 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+KDG  
Sbjct: 420 LPAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGK 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +LSDI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK GR+HIL
Sbjct: 480 FAVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHIL 539

Query: 533 NEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
            EM K V S +  +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G
Sbjct: 540 GEMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEG 599

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS   A  + A+  I  +T   EV K+Y+G V+K++DFGA V     +DGL+HISQ
Sbjct: 600 VVTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQ 659

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ ERV   +D +KEG  V VK+L+ DDRG++KLSMK
Sbjct: 660 IANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMK 696


>gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25090941|sp|Q8K9H5|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
          Length = 707

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/688 (49%), Positives = 496/688 (72%), Gaps = 2/688 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+A+  +T V  TVV +++    Q FFPLTVNYQERT
Sbjct: 8   KFQYGQHTITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG+IPGG+ RRE RP+ENEIL +R+IDR IRPLF K + NE Q+I  V+  + + +P 
Sbjct: 68  YAVGRIPGGFFRREGRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           ++S++ ASAAL LSG+PF GP+  A+V ++N QYVLNP +D+ + S LDL VSGTQ+AVL
Sbjct: 128 IISIIGASAALSLSGIPFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLDLVVSGTQNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE E+  LSED +L AI+FGH + + VI  I  L+   +K P +I   +  ++LE +++
Sbjct: 188 MVEAESKVLSEDKILGAIMFGHQQQQVVINNIRSLSNEASKLPWIISYPEINTELELKIT 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ ++D+  +  I  K  R ++++ LK++++  F SE+S+ +  EI  +FE I+  +VR 
Sbjct: 248 KLAEKDISNAYLIFNKQERYEKLNFLKEEIIKLFFSENSNIDISEIEDIFEKIEKNIVRK 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQ++V VTLGT  D Q +D 
Sbjct: 308 RILNNENRIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSRDAQNLDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + ++F+ HYNF P + GE+  +G+P RREIGHGRLA+R++  V+P+   FPYT+RI
Sbjct: 368 LLGDKTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMPKLDDFPYTIRI 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGI+MGLVK+GD +++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGDKYVLLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKV+GT+ GITA+QMD+KI GI+  IM +AL +AK  RLHILN M + LS+ R +
Sbjct: 488 LGDMDFKVSGTEEGITALQMDIKIEGITNEIMRIALNKAKSARLHILNVMKQALSKPRNE 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGT+KI+++   + + 
Sbjct: 548 ISEFAPRIHKIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTIKISATIGEKAKN 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAF+     ++GLVHISQ+S +RV K SD + 
Sbjct: 608 AIRRIEEITAEIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISNKRVEKVSDHLT 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
               + VK+L+ D +G+++LS+K V+ +
Sbjct: 668 VDQIISVKVLEIDRQGRLRLSIKEVENS 695


>gi|88797627|ref|ZP_01113216.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Reinekea sp. MED297]
 gi|88779799|gb|EAR10985.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Reinekea sp. MED297]
          Length = 706

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/700 (51%), Positives = 493/700 (70%), Gaps = 13/700 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           T   ++    + +ETGR+ARQ+ G+ + T  G+TVVLATVV   S+  GQDFFPL+V+YQ
Sbjct: 8   TKSFKFGQHDVTIETGRVARQATGSAICTMNGDTVVLATVVAKDSVSPGQDFFPLSVHYQ 67

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VG+IPGGYL+RE RP+E E L SR+IDR IRPLF K + NE QVIINV+  +   
Sbjct: 68  EKFYSVGRIPGGYLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIINVLSANKTD 127

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQ 182
            P + +M+A SAAL +SG+PF GP+  A+V Y + + Y+LNP  ++ + S LD+ V+GTQ
Sbjct: 128 DPDIAAMLATSAALAVSGVPFNGPIGAARVGYTDAEGYLLNPTFEQLETSRLDMVVAGTQ 187

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237
           DAVLMVE EA +LSED +L A++F H E +  + AI++ A    K      P   +    
Sbjct: 188 DAVLMVESEAQELSEDQMLGAVLFAHQEFQVAVSAIAEFAAEHGKPAWDWAPEAENEALK 247

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +K+ E  +  I E  +VS    +K  R   + DL+ + V   ++E    +  ++ S+F  
Sbjct: 248 TKVSEAYAAKIAEAYQVS----DKMQRYAALSDLRAQAVETLATEDGETSADDVASMFGK 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+   VR  +LD + R+DGRD +TVRDI  +VG+L   HGS+LF RG+TQA+V  TLGT 
Sbjct: 304 IEKNTVRQRILDGQPRIDGRDGKTVRDIKVEVGVLPGAHGSALFTRGETQALVTTTLGTL 363

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D +  D L+GT  ++FM+HYNF P + GE  R+G   RREIGHGRLA+R +  ++P T 
Sbjct: 364 RDGKMEDMLTGTITDNFMLHYNFPPFSVGEAGRIGGVGRREIGHGRLAKRGVLAMMPNTD 423

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLA+MDAGVP+ KPVAGIAMGLVK+GD F +L+
Sbjct: 424 DFPYTVRVVSEITESNGSSSMASVCGASLAMMDAGVPVKKPVAGIAMGLVKEGDKFTVLT 483

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI+E IM +AL QA   RLHIL EM++
Sbjct: 484 DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITEEIMEIALGQAMDARLHILREMAQ 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+  +R +L +  P +++M +  D+IR+VIG GG  IR I++QTGA+V+I DDGTV+I +
Sbjct: 544 VIGYARPELPDNAPTMDVMKVDQDKIRDVIGKGGATIRSIIDQTGAEVDISDDGTVRIYA 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++    EAAR MI +IT  PE+ ++YKG V ++ DFGAFV F   +DGLVHISQ++ ER+
Sbjct: 604 AAKEGAEAARNMILAITAEPEIGEVYKGTVARLADFGAFVTFLPGKDGLVHISQIAQERI 663

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696
            K +D + EG+ V VK+LD D RG++KLS+K V D++  K
Sbjct: 664 EKVADKLSEGEAVVVKVLDVDARGRVKLSIKEVTDEDRAK 703


>gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
 gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
          Length = 704

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/697 (51%), Positives = 487/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+   +  
Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMIAA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300
            + + + + L  +  + +K  R   I  +KK ++   +   +   W  G++   F +++ 
Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGSLAPRATVEGWVAGDLSKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D 
Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++TPR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYTPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis
           Bem]
 gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 696

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/692 (50%), Positives = 478/692 (69%), Gaps = 13/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VHTV+ E  G+ + +ETG+IA+Q+ GAV+   G+T+VL T V  +S K+GQ FFPLTVNY
Sbjct: 2   VHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE RP++NE L  R+IDR IRPLF + + N+TQ++  V+  D +
Sbjct: 62  QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++SM+ ASAALM+S +PF GP+ G +V  ++GQ++ NP  ++++ S L++ ++ +Q
Sbjct: 122 NDPGILSMIGASAALMVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDLEIVIAASQ 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKD 236
           DA+LMVE  A ++SED +L+AI FGH   +PV+ A  +LAK           P+V ++  
Sbjct: 182 DAILMVEGSACEVSEDDLLEAIFFGHKAVQPVLAAQLELAKKVGTSKREIPAPVVNEA-- 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L+  +S + KE ++ +  I  K  R   ID +  + V+  S+E    +E EI    E
Sbjct: 240 ---LKARVSALAKEGMKQAVRIKTKVERHLAIDAIADETVAALSAEFEG-SEKEIKGFIE 295

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++  +VR  ++    R+DGRD++T+R IS +V LL R HGS+LF RG+TQ+IV  TLGT
Sbjct: 296 DLEYDLVREHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGT 355

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RA+  VLP+ 
Sbjct: 356 SVDEQRIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKH 415

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVS+ITES+GSSSMATVCG SL++MDAG+PI  PVAGIAMGL+K+GDDF IL
Sbjct: 416 DDFPYTIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAIL 475

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM  AL QAK GR+HIL EM+
Sbjct: 476 SDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMA 535

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +  SR  L  F PR+  + +  D+IR+VIG GGK IR + E TG  ++IDD G + IA
Sbjct: 536 KTIGASRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIA 595

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S++    + A +MIR++T   E  K+Y G V K+M+FGAFV      DGLVH+S+L TER
Sbjct: 596 STNKEACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTER 655

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V   SD++KEGD V VK +  D +GKIKLS K
Sbjct: 656 VKNVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687


>gi|166712594|ref|ZP_02243801.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 704

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 486/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+   +  
Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKN-DGMIA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300
            + + + + L  +  + +K  R   I  +KK ++   +   +   W  G++   F +++ 
Sbjct: 244 ALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D 
Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas perforans 91-118]
 gi|123730263|sp|Q3BRP9|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas perforans 91-118]
          Length = 704

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/699 (51%), Positives = 487/699 (69%), Gaps = 14/699 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF+GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+     E
Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKN-----E 239

Query: 243 EMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFE 296
            M   +KE   D   S F + +K  R   I  +KK ++   +   +   W  G++   F 
Sbjct: 240 GMIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFG 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++ + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT
Sbjct: 300 ELEYQTMRGSVLSSKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P  
Sbjct: 360 ARDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTL 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++L
Sbjct: 420 EEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMA 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IA
Sbjct: 540 HALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S +    +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ER
Sbjct: 600 SVNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V K  D +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 660 VEKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 704

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 486/697 (69%), Gaps = 6/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+   +  
Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKN-DGMIA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300
            + + + + L  +  + +K  R   I  +KK ++   +   +   W  G++   F +++ 
Sbjct: 244 ALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGVLAPRATIEGWAAGDLSKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D 
Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus
           VCS1703A]
 gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus
           VCS1703A]
          Length = 693

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/689 (50%), Positives = 481/689 (69%), Gaps = 6/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V   +    + LETG IARQ+DGAV+    +T+VL TVV ++++ +GQDFFPLTV+YQ
Sbjct: 3   HSVSFTYGQHQVTLETGEIARQADGAVIVNMDDTIVLVTVVANKTVAEGQDFFPLTVDYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP+E E LISR+IDR IRPLF+  + NE Q+I  V+ ++ E 
Sbjct: 63  EKNYAAGKIPGGFFKREGRPSEEETLISRLIDRPIRPLFADGFLNEVQIIATVLSYNPEV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           SP + S++ ASAAL LSGLPF GP+  A+V Y+N  YVLNP     + S LDL V+GT+ 
Sbjct: 123 SPDIPSIIGASAALKLSGLPFNGPIAAARVGYVNDAYVLNPSPKALKNSRLDLVVAGTES 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLE 241
           AVLMVE EA+QLSE V+L+A++FGH + + VI++I++LA   AK      S  +D  +L+
Sbjct: 183 AVLMVESEADQLSEAVMLEAVMFGHRQQQVVIKSINELAAQAAKPAWAWQSPARD-EQLD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQ 299
            E+    +E L  +  I  K  R + +  +    V+    ++++  W E  +      + 
Sbjct: 242 TEVKNHFEERLVAAYQIAHKQTRQETVAQIHADAVALLGIQNNAHGWEETLVNEYVHHLA 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L K+ R+DGRD++TVR I+    +L R HGS+LF RG+TQA+VV TLGT  D
Sbjct: 302 YRIVRDRILKKQPRIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+L G  R++FM+HYNFLP + GE+ R+G+P RREIGHGRLARR +  VLP    F
Sbjct: 362 AQLLDTLDGEVRDNFMLHYNFLPFSVGEIGRIGSPKRREIGHGRLARRGLSAVLPLEEDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGL+K+GD+F IL+DI
Sbjct: 422 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+E IM  AL QA  GRLHIL  M++ +
Sbjct: 482 LGDEDHLGDMDFKVAGSATGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR   M I  ++I++VIG GG  IR I EQTG  + I+DDG+VKIA++ 
Sbjct: 542 AAPRAELSDYAPRFSSMRIDTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    AR +I  I   PE+ +IY  +V K+ DFGAF+ F   ++GLVHISQ++  RV  
Sbjct: 602 KAAAANARRLIEEIVAEPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVND 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             D + EG  V VKLL+ D +G+++LS+K
Sbjct: 662 VRDELTEGQEVKVKLLEIDRQGRVRLSIK 690


>gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae
           T7901]
 gi|259534168|sp|C5BPV5|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae
           T7901]
          Length = 705

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/688 (50%), Positives = 481/688 (69%), Gaps = 11/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETGRIARQ+ GAVLA+ G+T VL TVV  +    GQDFFPL+V+YQE+ 
Sbjct: 7   KFQYGNDTITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSVHYQEKA 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE QV+  V+  + +  P 
Sbjct: 67  YAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAEKDVDPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAV 185
           + +M+  SAAL +SG+PF GP+  A+V Y     Y+LNP       S LD+ V+GTQDAV
Sbjct: 127 ICAMIGTSAALAISGIPFNGPIGAARVGYTQADGYLLNPTYQALASSELDMVVAGTQDAV 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKL 240
           LMVE EAN+L ED++L A+++ H E + V++A+++LAK   K     +P  ++      L
Sbjct: 187 LMVESEANELPEDIMLGAVLYAHQEMQAVVQAVNELAKDAGKPTWDWQPEAVNQALVDAL 246

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           + +     +E + V+  I +K  R  ++ +L+ + V+  + E S  ++ ++  VF  ++ 
Sbjct: 247 KADF----EESIGVAYRITDKQKRYDRLSELRSQAVAQLAGEGSDISQDDVKKVFGKLEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR+ ++  + R+DGRD++TVR +  +VG+L + HGS+LF RG+TQA+VV TLG+  D 
Sbjct: 303 NIVRSRVVAGEPRIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSARDA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G  R++FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP+  QFP
Sbjct: 363 QIIDALEGEHRDNFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPKEDQFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ + F +L+DI 
Sbjct: 423 YTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEENGFAVLTDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM  AL+QA   RLHIL+EM+ V++
Sbjct: 483 GDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMETALEQALHARLHILSEMNAVIA 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R  L +  P+   M + P++IR++IG GG  IR I E+TGA ++IDDDGTVKI     
Sbjct: 543 QPRESLSDNAPQFHTMKVDPEKIRDIIGKGGATIRSITEETGASIDIDDDGTVKIYGDDG 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A   I  IT   E+ ++YKG+VV+++DFGAFV+F   +DGLVHISQ++ ERV   
Sbjct: 603 DSLQGAINRIEEITAEAEIGEVYKGKVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQNV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D +KEG  V VK +D D RG+IKLS+K
Sbjct: 663 TDYLKEGQEVDVKCMDIDQRGRIKLSIK 690


>gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
 gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
          Length = 701

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/698 (50%), Positives = 473/698 (67%), Gaps = 3/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V   E  +  +   LETG+IARQ+ GAVL +  +  VL TVV  +     +DFFPLT
Sbjct: 1   MFNVVKKEFRFGDQTYTLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADPSKDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE +P+E E L SR+IDR +RPLF + ++NE Q+I  V+  
Sbjct: 61  VNYQEKTYASGRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P + ++V ASAAL +SG+PF GP+  A+V +++G YVLNP     ++ SLDL V+
Sbjct: 121 DKKTDPDIAALVGASAALAISGIPFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  AVLMVE EA +L+ED +L A+++GH E +  IEAI+  AK          +++ + 
Sbjct: 181 GTDQAVLMVESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEVGTPRWEWQAEEENV 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFED 297
            L+  +    +  LR +  I EK  R +Q+  +K + VS  + E  S   + E+  +  D
Sbjct: 241 GLKARIRDGYEAQLRQAYTITEKQARYEQVGAIKAQAVSDLAVEGQSEITKEEVSRLLGD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  +L    R+DGRD++TVR IS +VG L RTHGS+LF RG+TQAIV  TLG+ 
Sbjct: 301 LEYYVVRDNILSAHPRIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSM 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L G +   FM+HYNF P   GE      P RREIGHGRLARR I  VLP+ +
Sbjct: 361 RDSQTVDYLEGARSEPFMLHYNFPPFCVGETGGQLGPKRREIGHGRLARRGIQAVLPENS 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+GD F +L+
Sbjct: 421 AFPYAIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA+ GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIDGITEEIMEVALNQARDGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+  SR  L    P      I PD+IR+VIG GG  IR I E+T A ++I+D G V+I  
Sbjct: 541 VIEASRPALSRDAPVYLTTKIDPDKIRDVIGKGGATIRQICEETSATIDIEDTGVVRIYG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA   + +IT  PE+ +IY G+V +++DFGAFV F   +DGLVHISQ++ ERV
Sbjct: 601 ENGGSADAALARVLAITTEPEIGQIYTGKVARIVDFGAFVTFMPGQDGLVHISQIAEERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           AK +D ++EG  V VK+LD D+RG++KLS+K    + G
Sbjct: 661 AKVTDYLQEGQEVQVKVLDIDNRGRVKLSIKEAKADAG 698


>gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus
           degradans 2-40]
 gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans
           2-40]
          Length = 722

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/686 (50%), Positives = 483/686 (70%), Gaps = 7/686 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETGRIARQ+ GAVLA+ G+T VL  V   +  K GQDFFPL+V+YQE+ 
Sbjct: 19  KFQYGNDTVTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPGQDFFPLSVHYQEKA 78

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  V+  + +  P 
Sbjct: 79  YAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFLNEVQVVCTVISAEKDVDPD 138

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
           +V+M+  SAAL +SG+PF GP+  A+V Y     Y+LNP     + S LD+ V+GT DAV
Sbjct: 139 IVAMIGTSAALAISGIPFNGPIGAARVGYTQESGYLLNPTYSTLKTSELDMVVAGTADAV 198

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEE 242
           LMVE EA +L ED++L A+++ H E + V++A+++LAK  AK   V D K     ++L+ 
Sbjct: 199 LMVESEAKELPEDIMLGAVLYAHQEMQAVVQAVAELAKDAAKP--VWDWKPEEVNAELKA 256

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++     + + V+  I +K  R  ++ +L+ + V+  ++E S  +  E+  +F  I+ ++
Sbjct: 257 KVEHGFADSVGVAYRITDKQKRYDRLSELRNQAVAELATEESGVSADEVKGLFAKIEKQI 316

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ ++  + R+DGRDS+TVR +  +VG+L + HGS+LF RG+TQA+VV TLG+  D Q 
Sbjct: 317 VRSRVVAGEPRIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARDAQI 376

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D+L G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR I  VLP+   FPYT
Sbjct: 377 IDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGIGAVLPKEEDFPYT 436

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+ + F +L+DI GD
Sbjct: 437 MRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTDILGD 496

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RLHIL EM++V++  
Sbjct: 497 EDHLGDMDFKVAGTADGVTALQMDIKIEGITEEIMEIALGQAMDARLHILAEMNRVIASP 556

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L E  P+   M I PD+IR++IG GG  IR I E+TGA ++IDD+GT+KI +     
Sbjct: 557 RKELSENAPQFHTMKIDPDKIRDIIGKGGATIRSITEETGASIDIDDNGTIKIYADDGDG 616

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++AA   I  IT   E+  +Y+G+VV+++DFGAFV+F   +DGLVHISQ++ ERV   SD
Sbjct: 617 MQAAIARIEEITAEAEIGAVYQGKVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQNVSD 676

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +KEG  + VK +D D RG+IKLS+K
Sbjct: 677 YLKEGQDIEVKCMDIDQRGRIKLSIK 702


>gi|152995062|ref|YP_001339897.1| polynucleotide phosphorylase/polyadenylase [Marinomonas sp. MWYL1]
 gi|189037308|sp|A6VU33|PNP_MARMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150835986|gb|ABR69962.1| Polyribonucleotide nucleotidyltransferase [Marinomonas sp. MWYL1]
          Length = 702

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/692 (50%), Positives = 476/692 (68%), Gaps = 3/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T   ++    + LETGRIARQ+ GAVL T G+  VLATVV  +S K GQDFFPL+V+Y
Sbjct: 3   ITTKTFQFGNDTVTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAKAGQDFFPLSVHY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER YAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+  VM  +  
Sbjct: 63  QERAYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTN 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGSL-DLFVSGT 181
               + +M+A SAAL +SG+PF GP+  A+V + +   YVLNP   +  GSL D+ V+GT
Sbjct: 123 LDADIAAMLATSAALTISGIPFNGPIGAARVGFNDESGYVLNPSYSDLDGSLLDMVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           +DAVLMVE EA +L+ED +L A+++ H E +  I AI++ A  CAK     +++  +  L
Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLYAHKEMQAAISAITEFAAECAKPRWDWEAEAANVSL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + +       +  +  I EK  R  Q+  ++   V+   +E   + E ++   F  ++ 
Sbjct: 243 ADALQSGYAAQIEEAYGISEKMARYAQLGVVRDAAVAALVTEEGEFTEADVTGAFSKLEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  ++D K R+DGRD++TVR I+ +VGLL +THGS+LF RG+TQAI   TLGT  D 
Sbjct: 303 RIVRRRVIDGKPRIDGRDNKTVRPINVEVGLLSKTHGSALFTRGETQAIATCTLGTSRDS 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D L+G  ++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP   +FP
Sbjct: 363 QMTDGLTGESKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEDEFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGL+K+ D F +L+DI 
Sbjct: 423 YTIRVVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLIKEDDGFAVLTDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI+E IM +AL QA   R HIL EM+KV+ 
Sbjct: 483 GDEDHLGDMDFKVAGTAEGITALQMDIKIEGINEEIMDIALSQALEARTHILREMAKVIG 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +R ++    P +  + I P++IR+VIG GG  IR I EQTGA +++DDDGTV+I ++  
Sbjct: 543 YARPEVSPNAPSMATIKIDPEKIRDVIGKGGATIRSITEQTGASIDLDDDGTVRIYAADK 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  +AA   I  IT   EV+K+YKG+VV++ +FGAFV+    +DGLVHISQ++ ER+   
Sbjct: 603 ASSDAALLKIHEITAEAEVDKLYKGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIRAV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +D + EG  V VK+LD D RG+IKLSMK V +
Sbjct: 663 TDFLSEGQEVIVKVLDVDARGRIKLSMKDVTE 694


>gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum
           EbN1]
 gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum
           aromaticum EbN1]
          Length = 699

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/690 (50%), Positives = 487/690 (70%), Gaps = 12/690 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +    + LETG IARQ+ GAV+    +T+VLATVV  +  K GQDFFPLTV+Y E+ YA 
Sbjct: 11  YGAHTVTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYVEKFYAA 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPGG+ +RE RPTE E L SR+IDR IRPLF + + NE QVII V+  + E  P + +
Sbjct: 71  GRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEVDPDIPA 130

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189
           M+ ASAAL +SG+PF+GP+   +V Y  GQY+LNP +++ + S L+L V+GT+ AVLMVE
Sbjct: 131 MIGASAALAISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELNLVVAGTEAAVLMVE 190

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEM 244
            EA +LSE+V+L A++FGH + +  I AI++L ++  K     +P   +    ++++E  
Sbjct: 191 SEARELSEEVMLGAVVFGHQQMQVAIRAINELVEVAGKPEWDWQPPAKNEPLIARIKELA 250

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAKVV 303
              ++E  R++     K  R ++I++++K+     +        G E+  +F D++A VV
Sbjct: 251 GAHLEEAFRITS----KQARTQRINEIRKQTFGVVADGVEVPPTGNELKDIFHDLEAGVV 306

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L  + R+DGRD+ TVR I  +VG+L RTHGS+LF RG+TQA+V+ TLGT  DEQ +
Sbjct: 307 RSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQII 366

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+++G  R  F++HYNF P +TGE  RMG   RRE+GHGRLA+RA+   LP    F YT+
Sbjct: 367 DAIAGEYRESFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADEDFSYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMA+VCG+SLA+MDAGVP+   VAGIAMGL+K+G+ F +L+DI GDE
Sbjct: 427 RVVSEITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLTDILGDE 486

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA  GR+HIL  M + L+  R
Sbjct: 487 DHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQALASHR 546

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++ EF PR+  M I P++IR+VIG GG VIRG+ E+TG  + + DDG+V I+S S    
Sbjct: 547 GEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRGLQEETGTVIELQDDGSVTISSVSAEGA 606

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A+E I +IT   EV K+Y G VV+++DFGA V+    RDGL+H+SQ++ ERV   +D 
Sbjct: 607 QLAKEKIEAITAEVEVGKVYNGTVVRLLDFGAIVNIMPGRDGLLHVSQIANERVNNVADY 666

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK-VVDQ 692
           VKEG  V VK+L+ D+RGKI+LSMK ++DQ
Sbjct: 667 VKEGQAVRVKVLETDERGKIRLSMKALLDQ 696


>gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21]
 gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21]
          Length = 696

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/687 (50%), Positives = 476/687 (69%), Gaps = 3/687 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VHTV+ E  G+ + +ETG+IA+Q+ GAV+   G+T+VL T V  +S K+GQ FFPLTVNY
Sbjct: 2   VHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE RP++NE L  R+IDR IRPLF + + N+TQV+  V+  D +
Sbjct: 62  QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P ++SM+ ASAALM+S  PF GP+ G +V  +NG ++ NP  +E ++  L++ ++ +Q
Sbjct: 122 NDPAILSMIGASAALMVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSDLEIVIAASQ 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +A+LMVE  A ++SE+ +L+AI FGH   +P++ A  +LAK       VI +   ++ L+
Sbjct: 182 EAILMVEGSAAEVSENDLLEAIFFGHAAVQPILAAQLELAKKVGTPKRVILAPVVNEELK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + KE ++ +  I  K  R   ID +  + V+  ++E    +E E+    ED++  
Sbjct: 242 ARVAALAKEGMKQAVRIKTKVERHLAIDAITAETVAALAAEFEG-SEKEVKGFIEDLEYD 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  ++    R+DGRD++T+R IS +V LL R HGS+LF RG+TQ+IV  TLGT  DEQ
Sbjct: 301 LVREHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RA+  VLP+   FPY
Sbjct: 361 RIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+ITES+GSSSMATVCG SL++MDAG+PI  PVAGIAMGL+K+GDDF ILSDI G
Sbjct: 421 TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM  AL QAK GR+HIL EM+K ++ 
Sbjct: 481 DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIAA 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR  L  F PR+  + +  D+IR+VIG GGK IR + E TG  ++IDD G + IAS++  
Sbjct: 541 SRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIASTNKE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MIR++T   E  K+Y G V K+M+FGAFV      DGLVH+S+L TERV   S
Sbjct: 601 ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D++KEGD V VK +  D +GKIKLS K
Sbjct: 661 DILKEGDKVLVKCIGIDKQGKIKLSRK 687


>gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Paris]
 gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Paris]
          Length = 729

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/695 (48%), Positives = 483/695 (69%), Gaps = 2/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNYQE
Sbjct: 5   TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGESNDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E S
Sbjct: 65  KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP R ++++  LDL ++GT+DA
Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           +LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+  
Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREVGKSKPEWKAPEIDTVLKAR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++ + + ++  +  I +K  R +++D+L+++ +S   +E+   N   I ++F +++  +V
Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSIV 304

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q +
Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP T +FPY L
Sbjct: 365 DGISGETRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEFPYVL 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI GDE
Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E R
Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEHR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S     +
Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKMAL 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  ER  K  +V
Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAERTQKVEEV 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
 gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
          Length = 707

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/697 (49%), Positives = 488/697 (70%), Gaps = 20/697 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+A+  +T V  +VV  ++  +GQDFFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  + + +P +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPDVNPDM 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           ++M+A SAAL +SGLPF GP+  A+V ++N Q+VLNP   E ++  LDL VSGT+DAVLM
Sbjct: 128 ITMIATSAALAISGLPFNGPIGAARVGFVNDQFVLNPSNTELEESRLDLVVSGTKDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLE 241
           VE EA++LSE+ +L A+++GH++ + VI AI++ A   A        P+V      ++L+
Sbjct: 188 VESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVV-----NAELK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++   +  L  +  I EK  R  ++  +K  +V+   +E  + +E E+  +   ++  
Sbjct: 243 ARVADKAETRLSDAYQITEKMARYDEVGSIKNDVVTSLLAEDETLDERELRGMLSSLEKN 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q
Sbjct: 303 VVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPY
Sbjct: 363 IIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI G
Sbjct: 423 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   +  
Sbjct: 483 DEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGS 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++  A
Sbjct: 543 HRDDISQFAPRIHTMKISSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGA 602

Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              AA+E IR I ++    EV +IY G+V++++DFGAFV   GA++GLVHISQ++ ERV 
Sbjct: 603 ---AAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQN 693
           K SD ++ G  V VK+L+ D +G+I+LSMK  V DQN
Sbjct: 660 KVSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQN 696


>gi|21243412|ref|NP_642994.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|81801072|sp|Q8PJ59|PNP_XANAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21108963|gb|AAM37530.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 704

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/695 (50%), Positives = 484/695 (69%), Gaps = 6/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF+GP+  A+V Y NG+Y+LNP + E + S L+L V+GT +A
Sbjct: 125 GDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEE 242
           VLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P   V  +K+   +  
Sbjct: 185 VLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMIAA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300
            + + + + L  +  + +K  R   I  +KK ++   +   +   W  G++   F +++ 
Sbjct: 245 -LKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELEY 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R  +L  KVR+DGR  +TVR ISA  G+L RTHGS+LF RG+TQAIV+ TLGT  D 
Sbjct: 304 QTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDG 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +FP
Sbjct: 364 QVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L+
Sbjct: 484 GDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALT 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS + 
Sbjct: 544 TPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVNA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K 
Sbjct: 604 IAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            D +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 664 GDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
 gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
          Length = 699

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/693 (49%), Positives = 491/693 (70%), Gaps = 12/693 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +    + LETG +ARQ+ GAV+    +TVVLATVV  +  K GQDFFPLTV+Y E+ YA 
Sbjct: 11  YGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYVEKFYAA 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPGG+ +RE RPTE E L SR+IDR IRPLF + + NE QVI+ V+  + E    + +
Sbjct: 71  GRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEVDADIPA 130

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189
           M+AASAAL +SG+PF+GP+  A+V Y +GQY+LNP +++ + S L+L V+GT  AVLMVE
Sbjct: 131 MIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVAGTASAVLMVE 190

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEM 244
            EA++LSE V+L A++FGH + +  I AI++L ++  K     +P   +    ++++E  
Sbjct: 191 SEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEWNWQPPAANDALVARVKELA 250

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVV 303
              ++E  R++     K  R +++ +++K+ ++  +    ++ +E EI  +F  ++A  V
Sbjct: 251 LADVEEAFRITS----KQARTERLSEIRKRTIAALTDGVDNAPSENEIKDIFFTLEAGTV 306

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ + R+DGRD+ TVR I  +VG+L RTHGS+LF RG+TQA+VV TLGT  DEQ +
Sbjct: 307 RSRILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQII 366

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+++G  +  FM+HYNF P +TGE  R G   RREIGHGRLA+RA+  +LP+   F YT+
Sbjct: 367 DAIAGEYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGEDFSYTI 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMA+VCG SLALMDAGVP+   VAGIAMGL+KDG+ F +L+DI GDE
Sbjct: 427 RVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFAVLTDILGDE 486

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA  GRLHIL +M   L  +R
Sbjct: 487 DHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKDALGVAR 546

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++ EF PR+  M I P++IR+VIG GG VIR + E+TG  + I+DDG++ I+S S    
Sbjct: 547 GEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSITISSVSAEGA 606

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A+  I  IT   EV K+Y+G VV+++DFGA V+    RDGL+H+SQ++ ERV    D 
Sbjct: 607 QKAKARIEDITAEVEVGKVYEGTVVRLLDFGAIVNILPGRDGLLHVSQIANERVNNVGDY 666

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTG 695
           VKEG  V VK+L+ D+RGKI+LSMK ++++N G
Sbjct: 667 VKEGQAVRVKVLETDERGKIRLSMKALLNENAG 699


>gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium
           profundum SS9]
 gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum SS9]
          Length = 707

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/697 (50%), Positives = 486/697 (69%), Gaps = 20/697 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+A+  +T V  +VV  ++  +GQDFFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  + E +P +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPEVNPDM 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           ++M+A SAAL +SGLPF GP+  A+V +IN Q+VLNP   E ++  LDL VSGT+DAVLM
Sbjct: 128 ITMIATSAALAISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLDLVVSGTKDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLE 241
           VE EA++LSE+ +L A+++GH++ + VI AI++ A   A        P+V      ++L+
Sbjct: 188 VESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVV-----NAELK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++      L  +  I EK  R  ++  +K  +V+   +E  + +E E+  +   ++  
Sbjct: 243 ARVADKAATRLSDAYQITEKMARYDEVGSIKNDVVASLLAEDETLDERELRGMLSSLEKH 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q
Sbjct: 303 VVRGRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPY
Sbjct: 363 IIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI G
Sbjct: 423 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   +  
Sbjct: 483 DEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGT 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++  A
Sbjct: 543 HRDDISQFAPRIHTMKINSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATEGA 602

Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              AA+E IR I ++    EV +IY G+V++++DFGAFV   GA++GLVHISQ++ ERV 
Sbjct: 603 ---AAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQN 693
           K SD ++ G  V VK+L+ D +G+I+LSMK  V DQN
Sbjct: 660 KVSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQN 696


>gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
 gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
          Length = 708

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/685 (50%), Positives = 483/685 (70%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  +GQDFFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +   SP +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           V+M+  SAAL +SG+PF GP+  A+V YIN Q+VLNP  ++ ++  LDL V+GT+DAVLM
Sbjct: 128 VTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGTKDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA++LSE+ +L A++FGH++ +  I AI++ A   A      +  ++ + L+ ++++
Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTALKNKIAE 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + +  L  +  I EK  R  +I ++  ++     +E +  N  EI ++F D++  VVR  
Sbjct: 248 LAEAKLVDAYQITEKMARYDRIHEIAGEVNDAILAEDAEANSKEIHTIFHDLEKTVVRGR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q +D L
Sbjct: 308 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  ++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPYT+R+V
Sbjct: 368 TGETKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   ++  R  +
Sbjct: 488 GDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPREDI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            EF PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   E  AA
Sbjct: 548 SEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT---EGTAA 604

Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +E IR I ++    EV +IY G+V++++DFGAFV   G ++GLVHISQ+S +RV K SD 
Sbjct: 605 KEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVSDY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ G  V VK+L+ D +G+I+LSMK
Sbjct: 665 LQMGQEVQVKVLEIDRQGRIRLSMK 689


>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
           JLW8]
 gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
          Length = 709

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/698 (49%), Positives = 486/698 (69%), Gaps = 13/698 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  I++    L LETG I+RQ+D AV+ +YG+TVVL  V   R +K GQDFFPLT
Sbjct: 1   MFNKFTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+  V+  
Sbjct: 61  VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           D E    + +++ ASAA+ LSG+P+ GP+  A+V YIN +YVLNP +   ++  LDL V+
Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPYYGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237
            T+ AV+MVE EA +LSE+V+L A+++GH + + VI+ IS+LA    K     D+ D+  
Sbjct: 181 ATESAVMMVESEAKELSEEVMLGAVVYGHEQMQAVIKMISELAAEAGK-----DAWDWVA 235

Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIV 292
               + L E+++ +   D+  +  I  K  R  +++++  ++++   +E +S  E  +I 
Sbjct: 236 PEPDTALIEKVASLAAADINAAFQIKAKGARSAKLEEITSRVLAELITEETSTTEANKIK 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +   +++AK VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV 
Sbjct: 296 NEIFNLEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVA 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   
Sbjct: 356 TLGTGRDEQIIDALQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAA 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+ 
Sbjct: 416 LPAKEDFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNR 475

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +L+DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM +AL QAK GR HIL
Sbjct: 476 VAVLTDILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITAQIMQVALAQAKEGRAHIL 535

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M + +S +  ++ +F PR+  M I P++IR+VIG GG VIR + E+TG  ++I+DDGT
Sbjct: 536 GIMKQAVSGANTEMSQFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEDDGT 595

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           VKIA +S  +   A+  I  IT   EV + Y+G V+K++DFGA V     +DGL+HISQ+
Sbjct: 596 VKIACTSSEQGAEAQRRIAEITAEVEVGQTYEGTVIKLLDFGAIVTLIPGKDGLLHISQI 655

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + +RV   +D +KEGD V VK+++ D++G+++LSMK +
Sbjct: 656 AHQRVNAVADFLKEGDVVKVKVVEADEKGRVRLSMKAL 693


>gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T]
 gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T]
          Length = 699

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/689 (50%), Positives = 490/689 (71%), Gaps = 4/689 (0%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +    + LETG +ARQ+ GAV+    ETVVLATVV  +  + GQDFFPLTV+Y E+ YA 
Sbjct: 11  YGAHTVTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLTVDYVEKFYAA 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPGG+ +RE RP+E EIL SR+IDR IRPLF   + NE QVI+ V+  + E    + +
Sbjct: 71  GRIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSLNPEIDSDIPA 130

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189
           M+ ASAAL +SGLPF GPV  A+V Y++G+Y+LNP   E Q S ++L V+GTQ AVLMVE
Sbjct: 131 MIGASAALAISGLPFNGPVGAARVGYLDGKYILNPTATELQSSAMNLVVAGTQTAVLMVE 190

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
            EA +L EDV+L A++FGH + +  I+AI+ L ++  K      +    + L  +++++ 
Sbjct: 191 SEAQELPEDVMLGAVVFGHEQMQTAIKAINDLVEVAGKPEWDWQAPPANAALIAKVTELA 250

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVM 307
           K ++  +  I  K  R  ++ +++K+++   +    ++ +  E+  +F ++++ +VR+ +
Sbjct: 251 KAEMEEAFRITSKQERSARLSEIRKRVIGQLTEGVENAPSVNELKDLFFNLESGIVRSRI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT  DEQ +D+++
Sbjct: 311 LNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIA 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G  +  F++HYNF P  TGE  R G   RRE+GHGRLA+R++  +LP+  +F YT+R+VS
Sbjct: 371 GEYKERFLLHYNFPPFCTGETGRFGITKRREVGHGRLAKRSLVAMLPKPEEFSYTVRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG SLA+MDAGVP+   VAGIAMGL+KDG+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGGSLAMMDAGVPLKNHVAGIAMGLIKDGNRFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT++GIT +QMD+KI GI++ IM  AL+QAK GRLHIL  M + L  SR Q+ 
Sbjct: 491 DMDFKVAGTENGITGLQMDIKIQGITKEIMHAALEQAKEGRLHILGLMQQALGTSRGQVS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           E+ PR+  M I P++IR+VIG GG VIR + E+TG  + I+DDG+VKI+S S    +AA+
Sbjct: 551 EYAPRMINMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSVKISSVSAEGAQAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
             I +IT   EV K+Y+G VV+++DFGA V+    RDGL+H+SQ++ ERV   SD VKEG
Sbjct: 611 ARIEAITAEVEVGKVYEGPVVRLLDFGAIVNIMPGRDGLLHVSQIANERVNNVSDYVKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK-VVDQNTG 695
             V VK+L+ D+RGKI+LSMK ++++N G
Sbjct: 671 QVVRVKVLETDERGKIRLSMKALLNENAG 699


>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 713

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/697 (50%), Positives = 492/697 (70%), Gaps = 11/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++  + + +ETG IARQ+ GAV+ +  +TVVLATVV    +K GQDFFPLT
Sbjct: 1   MFNKVSKTFQYGQQTVTMETGEIARQASGAVMVSVDDTVVLATVVAKDDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA G+IPG + +RE RP+E E L SR+IDR IRPLF + Y NE QVII+V+  
Sbjct: 61  VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YI+GQYVLNP   +     +DL V+
Sbjct: 121 NPEVDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L ED++L A++FGH + K VI+AI +L +   K  +  +    +K
Sbjct: 181 GTEQAVLMVESEAEELPEDIMLGAVVFGHEQMKVVIDAIDELVRDGGKPEV--EWAPPAK 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291
            EE    ++++ + +LR +  I +K  R  ++  +   +    ++E      S+ +  E+
Sbjct: 239 NEELIAAVTRIAEPELRKAYQIRQKQARSTELRHIYDNVSKTLAAEAQDKGVSAPDSVEV 298

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            ++  D++AK+VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV
Sbjct: 299 GNIMFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVV 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D Q +D+L G   + FMMHYN  P ATGE  R+G P RREIGHGRLA+RA+  
Sbjct: 359 ATLGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIA 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEI ES+GSSSMA+VCG SLALMDAGVP+   VAGIAMGL+K+G+
Sbjct: 419 CLPSQEEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKNHVAGIAMGLIKEGN 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT +G+ A+QMD+KI GI++ IM +AL QA+ GR+HI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTANGVNALQMDIKIQGITKEIMQVALAQAREGRMHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M + + + + +L +F PR+  + I P++IR+VIG GG VIRG+ E+TGA+++I DDG
Sbjct: 539 LSKMQEAMPQFKTELSDFAPRLITIRINPEKIRDVIGKGGAVIRGLTEETGAQIDITDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS   A  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ
Sbjct: 599 VVTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQILPGKDGLLHISQ 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +++ERV   +D ++EG  V VK+L+ DDRG+IKLSMK
Sbjct: 659 IASERVNAVTDYLEEGQAVRVKVLETDDRGRIKLSMK 695


>gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae
           WPP163]
 gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 706

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/689 (49%), Positives = 478/689 (69%), Gaps = 2/689 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GTQ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGTQGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA  LSED +L A++FGH++ + VIE I+ L     K      + + +  LE+ + 
Sbjct: 188 MVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNISLEQRVQ 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q++ +K  +V+   +E  + N GEI  +  +I+  VVR+
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILGNIEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            G  V VK+L+ D +G+++LS+K  +  T
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIKEANAQT 696


>gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
           SKA34]
 gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
           SKA34]
          Length = 708

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/685 (49%), Positives = 484/685 (70%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  +GQDFFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +   +P +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVNPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           V+M+  SAAL +SG+PF GP+  A+V YIN Q+VLNP  ++ ++  LDL V+GT+DAVLM
Sbjct: 128 VTMIGTSAALTISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGTKDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA++LSE+ +L A++FGH++ +  I AI++ A   A      +  ++ + L+ ++++
Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTALKNKIAE 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + +  L  +  I EK  R  +I ++  ++     +E +  N  EI ++F D++  VVR  
Sbjct: 248 LAETKLVEAYQITEKMARYDRIHEIAGEVNDAILAEDAEANTKEIHTIFHDLEKTVVRGR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q +D L
Sbjct: 308 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPYT+R+V
Sbjct: 368 TGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   ++  R  +
Sbjct: 488 GDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPREDI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            +F PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   E  AA
Sbjct: 548 SQFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT---EGTAA 604

Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +E IR I ++    EV +IY G+V++++DFGAFV   G ++GLVHISQ+S +RV K SD 
Sbjct: 605 KEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVSDY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ G  V VK+L+ D +G+I+LSMK
Sbjct: 665 LQMGQEVQVKVLEIDRQGRIRLSMK 689


>gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0010_01E20]
          Length = 701

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/694 (50%), Positives = 483/694 (69%), Gaps = 10/694 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++    + +ET ++A+Q+ G+V+ T G TVVL TVV  ++ + GQDFFPLTVNYQE+T
Sbjct: 7   EFQYGDETVVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTVNYQEKT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ RRE RP+E E L SR+IDR IRPLF K + NE QV+  V+  D +  P 
Sbjct: 67  YAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSADKDQDPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+  SAAL +SG+PF+GP+  A+V YI+G Y+LNP  +  + S L++ V+GT+ AVL
Sbjct: 127 IAAMIGTSAALAISGIPFKGPLGAARVGYIDGNYILNPGYESLKESMLNMTVAGTESAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LEEE 243
           MVE EA +++ED +L A++FGH E + +I+A+++LA +  KE    D +  +K   L+E 
Sbjct: 187 MVESEAKEMTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGKE--AWDWRAAAKDESLQET 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++  IK DL  +  I  K  R   +  L++K +   +   + ++  EI   F  ++  +V
Sbjct: 245 VATTIKTDLGEAYRISNKMERQTAVSALRQKAIEQIAGGDAEYSSDEISDTFAKVEKDLV 304

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +L+ + R+DGRD  TVR I  +VG+L + HGS+LF RG+TQA+VV TLGT  D   +
Sbjct: 305 RQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALI 364

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L G+ ++ FM+HYNF P + GE   M  P RREIGHG+LARR +   LP    FPYT+
Sbjct: 365 DALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSASLPNAEDFPYTI 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMA+VCG+SLALMDAGVPI+ PVAG+AMGLVK+G+ + +L+DI GDE
Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPITAPVAGVAMGLVKEGNRYAVLTDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGTD G+TA+QMD+KI GI+E IM  AL QA   R+HIL EM+KV+SESR
Sbjct: 485 DHLGDMDFKVAGTDKGVTALQMDIKIEGITEEIMESALAQAHEARIHILGEMNKVISESR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P +  M + PD+IR++IG GG  IR IVE+TGA+V+I+DDG+V+I +   +  
Sbjct: 545 SELSANAPAMVTMNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRIYAEDASAK 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +AA   I+ IT   EV +IY+G V +++DFGAFV     +DGL+HISQ++  RV   SD 
Sbjct: 605 DAAVARIQEITAEAEVGQIYEGTVARIVDFGAFVTILPGKDGLLHISQIAENRVENVSDY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV----DQN 693
           + EG  V V +LD D RG+IKLS+K +    DQN
Sbjct: 665 LSEGQDVEVVVLDVDQRGRIKLSIKELENYRDQN 698


>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 707

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/699 (50%), Positives = 487/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG IARQ+ GAV+ +  +TVVLATVV    +K GQDFFPLT
Sbjct: 1   MFNKVSKTFQYGQHTVTLETGEIARQASGAVVVSMDDTVVLATVVAKDDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA G+IPG + +RE RP+E E L SR+IDR IRPLF   Y NE QVII+V+  
Sbjct: 61  VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YI+GQYVLNP   +     LDL V+
Sbjct: 121 NPEIDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L EDV+L A++FGH + K VI+AI +L     K  +  +    ++
Sbjct: 181 GTEQAVLMVESEAKELPEDVMLGAVVFGHEQMKVVIDAIDELVSEGGKPEV--EWAPPAR 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EI 291
            EE    ++++ + +LR +  I +K  R  ++  + +K+    +SE  +         E+
Sbjct: 239 NEELIAAVTRIAEPELRKAYQIRQKQARSSELRHIYEKVNQTLASEAEAKGAAAPDSVEV 298

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            ++  D++A +VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV
Sbjct: 299 GNILFDLEAGIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVV 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D Q +D+L G   + FMMHYN  P ATGE  R+G P RREIGHGRLA+RA+  
Sbjct: 359 ATLGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVA 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEI ES+GSSSMA+VCG SLALMDAGVP+   VAGIAMGL+K+G+
Sbjct: 419 CLPSQDEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKTHVAGIAMGLIKEGN 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+ GR+HI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIQGITKEIMQVALAQAREGRMHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + + + + +L +F PR+  M I P++IR+VIG GG VIR + E+TGA+++I+DDG
Sbjct: 539 LGKMQEAMPQFKTELSDFAPRLITMRINPEKIRDVIGKGGAVIRALTEETGAQIDINDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS   A  + A+  I  +T   E  K Y G V+K++DFGA V     +DGL+HISQ
Sbjct: 599 IVTIASVDAAAGQEAKRRIEELTASVETGKTYDGTVLKLLDFGAIVQILPGKDGLLHISQ 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +++ERV   SD ++EG +V VK+L+ D+RG+IKLSMK V
Sbjct: 659 IASERVNAVSDYLEEGQSVRVKVLETDERGRIKLSMKAV 697


>gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp.
           SIP3-4]
 gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
 gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4]
 gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
          Length = 707

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/685 (50%), Positives = 482/685 (70%), Gaps = 3/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I +    L LETG IARQ+DGAV+ +YG+TVVL TVV    +K GQDFFPLTV+YQERTY
Sbjct: 8   ITYGQHELTLETGEIARQADGAVMVSYGDTVVLVTVVGKTDVKPGQDFFPLTVDYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE Q++  VM  D E    +
Sbjct: 68  AAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQIVATVMSSDSEIDSDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ ASAAL +SG+PF GP+  A+V YING+YVLNP   + + + LDL V+ T  AVLM
Sbjct: 128 PAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTATQLKDTELDLVVAATSTAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA +L EDV+L ++++GH + + VI  I+++A    KEP       + + L E+++ 
Sbjct: 188 VESEAKELPEDVMLGSVVYGHEQMQAVINLINEIAAEVGKEPWDWTPPAENTALIEKITG 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAKVVRT 305
           +   D+  +  I  K  R  ++D++K +++S   +E +S  E  EI S+  +++AKVVR 
Sbjct: 248 IASADINAAYQIKSKGARSSKLDEIKSRVLSELITEATSTEEANEIKSILHNLEAKVVRG 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L+ + R+DGR++ TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT  DEQ +D+
Sbjct: 308 QILNGEPRIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDA 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   LP   +F YT+R+
Sbjct: 368 LQGEYTDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAALPSQEEFGYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+   +L+DI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDAGVPVKTHVAGIAMGLIKEGNRVAVLTDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG++ GITA+QMD+KI GI+  IM  AL QAK GRLHIL  M + + E+R +
Sbjct: 488 LGDMDFKVAGSEDGITALQMDIKITGITAEIMQAALAQAKEGRLHILGLMKEAMGETRQE 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F PR+  M I P++IR+VIG GG VIR + E+TG  ++I++DGT+KI  +S    E 
Sbjct: 548 LSAFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCTSAEAGEE 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+  I +IT   E+ + Y+G V+K++DFGA V     +DGL+HISQ++ +RV    D +K
Sbjct: 608 AKRRIEAITAEVEIGQTYEGTVIKLLDFGAIVSLLPGKDGLLHISQIAHQRVNAVGDFLK 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
           EG  V VK+++ D++G+++LSMK +
Sbjct: 668 EGQVVKVKVMEADEKGRVRLSMKAL 692


>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 706

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/692 (49%), Positives = 487/692 (70%), Gaps = 2/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++      +    + +ETG IARQ+ GAV+ +  +TVVL +VV +++ K GQDFFPLT
Sbjct: 1   MFNIVKKTFAYGAHQVTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF   + +E QV+  VM  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           + E  P + +++ ASAA+ +SG+PF+GP+  A+V Y++GQYV+NP   + + SL DL V+
Sbjct: 121 NPEIDPDIAALIGASAAMTISGIPFDGPIGAARVGYVDGQYVVNPTATQLKSSLLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GTQ AVLMVE EA +LSE+V+L A++FGH + + VI+AI++LA    K E     +    
Sbjct: 181 GTQAAVLMVESEAKELSEEVMLGAVVFGHQQMQVVIDAINELADEAGKPEWDWTPAARNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +  +++Q+++ +L+ +  I  K +R +++ ++    V   +++  + +   + ++   +
Sbjct: 241 AVHGKLNQLVEAELQEAYRITSKQLRSQRLKEVTAYAVETLTADDDAPDANAVRNMVSAV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR  +L  + R+DGRD+ TVR I+ + G+L R HGSSLF RG+TQAIVV TLGT  
Sbjct: 301 EARIVRGRILAGEPRIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+LSG  R  FM+HYNF P ATGE  R+G P RRE+GHGRLA+RA+  VLP    
Sbjct: 361 DEQIIDALSGEYRERFMLHYNFPPYATGECGRVGTPKRREVGHGRLAKRALLAVLPAPED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGL+K+G+   +L+D
Sbjct: 421 FSYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA   RLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAGEARLHILKQMQGS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R ++  + PR+  M I P++IR+VIG GG VIR I E+TG  ++I DDGT+ IAS 
Sbjct: 541 MSGHREEVSTYAPRLYTMKINPEKIRDVIGKGGAVIRAITEETGTTIDIKDDGTITIASV 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S     AAR  I SIT   EV K+Y G V+K++DFGA V     RDGL+HISQ++ ERV 
Sbjct: 601 SGEAASAARARIESITADVEVGKVYDGTVLKLLDFGAIVSILPGRDGLLHISQIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +D +K+G  V VK+L+ D++G+++LSMK +
Sbjct: 661 AVADYLKDGQKVRVKVLEADEKGRVRLSMKAL 692


>gi|307825114|ref|ZP_07655335.1| polyribonucleotide nucleotidyltransferase [Methylobacter
           tundripaludum SV96]
 gi|307733862|gb|EFO04718.1| polyribonucleotide nucleotidyltransferase [Methylobacter
           tundripaludum SV96]
          Length = 692

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/688 (51%), Positives = 482/688 (70%), Gaps = 8/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++  R +KLETG IARQ+DGAV+     T +L TVV  +    G DFFPLTVNYQE+ 
Sbjct: 7   EFQYGDRLVKLETGEIARQADGAVMIDVDGTTLLVTVVGKKQASGG-DFFPLTVNYQEKA 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+I  V+  + E  P 
Sbjct: 66  YAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYTNEVQIIATVVSLNPEVDPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR---LDEDQGSLDLFVSGTQDA 184
           + +++ ASAAL +SGLPF GPV  A V Y +G+Y+LNP    L E Q  L+L V+GT  A
Sbjct: 126 IPALLGASAALAVSGLPFNGPVGAATVGYKDGEYILNPTPAALKESQ--LELVVAGTAHA 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           VLMVE EA+ LSE+V+L A++FGH + +  I AI++ A       +   + +  ++L++ 
Sbjct: 184 VLMVESEADNLSEEVMLGAVLFGHQQMQVAINAINEFAAAAGAGVVEWVAPEVNAELKKL 243

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++  ++  ++ +  + EK VR +Q+ +++  +V    + +  + E +I  + E ++  +V
Sbjct: 244 VTAEVEAGIKAAYQVAEKLVRQEQLKEIRNAVVEKLVA-NGEYAESDIRGIIEHLEYSIV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +L++  R+DGR+ + +R I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ D Q +
Sbjct: 303 RNAILNEGKRIDGRELDKIRPITVRTGVLPRTHGSALFTRGETQALVVATLGTQRDAQII 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L+G  +  FM+HYNF P + GE   +G+P RREIGHGRLA+R +  VLP   +FPYT+
Sbjct: 363 DALAGEYKEPFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGVAAVLPNMEEFPYTI 422

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+TES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGL+K+GD F +LSDI GDE
Sbjct: 423 RVVSEVTESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGDSFAVLSDIMGDE 482

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK GRLHIL EM+K LS +R
Sbjct: 483 DHLGDMDFKVAGSVDGITALQMDIKIDGITAEIMKSALDQAKHGRLHILGEMNKALSTTR 542

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++ +F PR+    I P +IR VIG GG  IR I EQTGA V++ DDG VK+AS   A  
Sbjct: 543 EEMSDFAPRIITFKIDPSKIREVIGKGGATIRSITEQTGASVDLTDDGVVKVASVDKAAG 602

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E AR MI  IT   EV K+Y+G+VV++MDFGAFV     +DGLVHISQ+S ERV K SD 
Sbjct: 603 EEARRMIEEITAEVEVGKVYEGKVVRLMDFGAFVTILPGKDGLVHISQISDERVDKVSDR 662

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           + EGD V VK+L+ D +G+++LSMK V+
Sbjct: 663 LNEGDVVKVKVLEIDRQGRVRLSMKEVE 690


>gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 729

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/695 (48%), Positives = 481/695 (69%), Gaps = 2/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNYQE
Sbjct: 5   TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E S
Sbjct: 65  KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP R ++++  LDL ++GT+DA
Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243
           +LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +    L+  
Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLKAR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++ + + ++  +  I +K  R +++D+L+++ +S   +E+   N   I ++F +++  +V
Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSIV 304

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q +
Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY L
Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI GDE
Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E R
Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAEHR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G V++ S     +
Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVVQLFSPDKMAL 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  +V
Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVEEV 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
 gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
          Length = 702

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/692 (50%), Positives = 473/692 (68%), Gaps = 3/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T   ++    + LETGR+ARQ+ G+VL T G+  VLATVV  +S + GQ FFPL+V+Y
Sbjct: 3   ITTKTFQFGKDTVTLETGRVARQATGSVLCTIGDVQVLATVVGAKSAQAGQSFFPLSVHY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER YAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+I VM  + +
Sbjct: 63  QERAYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVITVMSTNTD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGT 181
           +   +  M+A SAAL +SG+PF GP+  A+V + +   YVLNP   E  GSL D+ V+GT
Sbjct: 123 TDADIAGMLATSAALSVSGIPFNGPIGAARVGFNDDDGYVLNPSYSELDGSLLDMVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240
           +DAVLMVE EA +L+ED +L A++F H E +  + AI++ A    K      ++ +   L
Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLFAHKELQAAVSAITEFAAEAGKPRWEWSAEPENETL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +  +++   + +  +  I EK  R  ++D+++   V    SE +   E ++   F  ++ 
Sbjct: 243 KAAITEGFADQVEAAYGISEKMARYSKLDEVRTAAVEALVSEEAGVEEADVTKAFAKLEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR  +++ K R+DGRD++TVR I  +VGLL +THGSSLF RG+TQAI   TLGT  D 
Sbjct: 303 NTVRRRVIESKPRIDGRDNKTVRPIEVEVGLLSKTHGSSLFTRGETQAIATCTLGTSRDA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D L+G  ++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP   +FP
Sbjct: 363 QMSDGLAGENKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEEEFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGLVK+ D F +L+DI 
Sbjct: 423 YTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM +AL QA   R HIL EMSKV+ 
Sbjct: 483 GDEDHLGDMDFKVAGTEEGITALQMDIKIEGINEEIMDIALSQALEARTHILREMSKVIG 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +R ++    P +  + I P++IR+VIG GG  IR I E TGA +++DDDGTV+I ++  
Sbjct: 543 YARPEVSPNAPSMASIKIDPEKIRDVIGKGGATIRSITELTGASIDLDDDGTVRIYAADK 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  +AA   I  IT   EV+KIYKG V ++ +FGAFV     +DGLVHISQ++ ER+   
Sbjct: 603 ASSDAALVRIYEITAEAEVDKIYKGTVARLAEFGAFVTILPGKDGLVHISQIAEERIRAV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SD ++EG  V VK+LD D RG+IKLSMK V +
Sbjct: 663 SDFLEEGQEVLVKVLDVDARGRIKLSMKDVSE 694


>gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
 gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 729

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/695 (48%), Positives = 482/695 (69%), Gaps = 2/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNYQE
Sbjct: 5   TKEIVFGNHNLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E S
Sbjct: 65  KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP R ++++  LDL ++GT+DA
Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           +LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+  
Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREVGKSKPEWKAPEIDTVLKAR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++ + + ++  +  I +K  R +++D+L+++ +S   +E+   N   I ++F +++  +V
Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERSIV 304

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q +
Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY L
Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI GDE
Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E R
Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAEHR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S     +
Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKMAL 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  +V
Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVEEV 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
 gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
          Length = 715

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/701 (49%), Positives = 489/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG IARQ+ GAVL +  +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKVSKSFQYGQHTVVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E EIL SR+IDR +RPLF + + NE QVI++ +  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQYVLNP   + Q S ++L V+
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYVLNPTSSQIQASQMNLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA  LSE+V+L  ++FGH++ +  I AI  L     K     +P   + 
Sbjct: 181 GTEAAVLMVESEAQNLSEEVMLGGVMFGHDQMQAAINAIHDLVAEAGKPEWDWQPAPANE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI----DDLKKKMVSYFSSE-HSSWNEG 289
                    ++   +E L+ +  + EK  R  ++     ++K K+  + +++   + +  
Sbjct: 241 ALAIA----VASAAQEGLQAAYLVREKQARTTKLREVYAEVKAKLAEHATAKCEDAPDNV 296

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E+ ++  D++AK+VR  +L+ + R+DGRD+ TVR IS  +G+L R HGS+LF RG+TQA+
Sbjct: 297 EVENMLFDLEAKIVRGQILNGEPRIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQAL 356

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT++DEQ +DS+ G  R+ FM+HYNF P ATGE  R G+P RREIGHGRLA+RA+
Sbjct: 357 VVATLGTKQDEQIIDSIMGEHRDRFMLHYNFPPFATGETGRFGSPKRREIGHGRLAKRAL 416

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP+   F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+KD
Sbjct: 417 VSSLPEAQDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKD 476

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G  F +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL QAK GRL
Sbjct: 477 GGKFAVLTDILGDEDHLGDMDFKVAGTVTGITALQMDIKIQGITREIMQVALAQAKEGRL 536

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + L  SR +L EF PR+  + I P++IR+VIG GG  IR + E+TG +++I D
Sbjct: 537 HILGKMKEALDGSRTELSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDIGD 596

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGT+ I+S+ L +   A   I+ +T   EV + Y+G V++++DFGA V     RDGL+HI
Sbjct: 597 DGTITISSADLDKAREAERRIKELTADVEVGQEYEGPVLRLLDFGAIVQVLPGRDGLLHI 656

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S+++  R+A  +DV+K G TV +K+++ DD+G+++LSMK +
Sbjct: 657 SEIANYRIANINDVLKVGQTVRIKVIEADDKGRLRLSMKAI 697


>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 735

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/702 (50%), Positives = 485/702 (69%), Gaps = 17/702 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      ++    ++LETG IARQ+ GAV+    +TVVLATVV  + +K GQDFFPLT
Sbjct: 14  MFNKVVKSFKYGDHNVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 73

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE Q+II+V+  
Sbjct: 74  VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 133

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YIN +YVL P L + + S LDL V+
Sbjct: 134 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 193

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSE+V+L A++FGH + + VIEAI +L +   K P+     D++ 
Sbjct: 194 GTERAVLMVESEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEEAGK-PLW----DWAP 248

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYV-RCKQ---------IDDLKKKMVSYFS-SEHSSWNE 288
            E     +   +  V   I E Y  R KQ          DD+ +K+ +     E +   E
Sbjct: 249 AERNQQLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGE 308

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ ++  +++A  VR  +L  + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA
Sbjct: 309 NEVANILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQA 368

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +VV TLGT++DEQ VD L+G QR  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA
Sbjct: 369 LVVTTLGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 428

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  VLP    F YT+R+VSEI ES+GSSSMA+VCG  L+L+DAGVP+   VAG+AMGL+K
Sbjct: 429 LTAVLPNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIK 488

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G+ F +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GIS+ IM +AL QAK GR
Sbjct: 489 EGNKFAVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGR 548

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HIL +M + +   + +L  + PR+    I PD+IR+VIG GG VIR + E+TG ++NI+
Sbjct: 549 MHILGKMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIE 608

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDGTV IAS   A    AR  +  +    EV K+Y+G+V +++DFGA V     RDGL+H
Sbjct: 609 DDGTVTIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLH 668

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ISQ++ ERV + SD +KEG TV VK+L+ DD+ +I+LSMK +
Sbjct: 669 ISQIAHERVNQVSDYLKEGQTVRVKVLEIDDKDRIRLSMKAL 710


>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
           aphrophilus NJ8700]
          Length = 709

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/683 (49%), Positives = 477/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP ++E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++ F++E     EG+I+ +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDVIKADVIAQFTAEDEEVAEGKIIDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +   R  
Sbjct: 487 LGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILSVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+     ++ 
Sbjct: 547 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  IT   E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVMVKVVEIDRQGRIRLTMK 689


>gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
           KT99]
 gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
           KT99]
          Length = 702

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/685 (51%), Positives = 476/685 (69%), Gaps = 10/685 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQERTYA
Sbjct: 9   EYGQHTITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTVNYQERTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D E +P V+
Sbjct: 69  AGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           SM+  SAAL +SGLPF GP+  A+V YING+Y+LNP + +  +  LDL V+GT+ AVLMV
Sbjct: 129 SMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAGTEGAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEMSQ 246
           E EA  L+E+V+L ++ +GH + + VI AI +L K  A +P    +   S   L  ++  
Sbjct: 189 ESEAASLAEEVMLGSVAYGHEQQQVVITAIKEL-KAEAGKPAWDWTAPVSDEDLVAKIKA 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + +E    +  I +K  R   ++ LK   +    +E++  +  E+  +   ++ +VVR  
Sbjct: 248 LAEEKFSAAYQIADKSERRDAVNALKSDAIEKLVAENADVDLREVGKILSSVEKQVVRGR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L  K R+DGR+ + VR ++   G+L RTHGS++F RG+TQA+V  TLGT  D Q VDS+
Sbjct: 308 ILAGKPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSI 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G   N FM+HYNF P   GE   +G+P RREIGHG+LA R +  V+P   +FPY++R+V
Sbjct: 368 MGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMKAVMPSAEEFPYSIRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMATVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   R  +
Sbjct: 488 GDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAIGTHRDDI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
               PR+ I+ I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIASS+    EA 
Sbjct: 548 SAHAPRITIIKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSNS---EAT 604

Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +E IR I ++    EV  IY G+VV+++DFGAFV     +DGLVHISQ++ ERVA  SD 
Sbjct: 605 KEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANVSDY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ G  V VK+++ D +G+++LSMK
Sbjct: 665 LQTGQEVKVKVMEVDRQGRVRLSMK 689


>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
          Length = 715

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/706 (49%), Positives = 490/706 (69%), Gaps = 12/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP R      +LDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI  L +   K     D +   K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQAAIDAIHDLVREGGKPEW--DWQPAPK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEI 291
            E     ++++ + DL  +  I +K  R  ++ ++   + +    E ++      ++  +
Sbjct: 241 NEPLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 IVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +  N G P
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKAL-LNEGAP 705


>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
          Length = 715

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/708 (49%), Positives = 492/708 (69%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP R      +LDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI  L +   K     D +  +K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEW--DWQPAAK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEI 291
            E     ++++ + DL  +  I +K  R  ++ ++   + +    E ++      ++  +
Sbjct: 241 NEPLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +  D  +G P
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAASGAP 708


>gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica
           PV-4]
 gi|187611300|sp|A3QGU0|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4]
          Length = 700

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/696 (50%), Positives = 481/696 (69%), Gaps = 32/696 (4%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  ++ + G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVII V+  D E SP V+
Sbjct: 69  AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V Y++G+Y+LNP + + + S L+L V+GT++AVLMV
Sbjct: 129 SMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAGTENAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----------EPIVIDSKDF 237
           E EA+ L E+V+L A+++GH + + VI+AI +L     K           E +V   KD 
Sbjct: 189 ESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEELVAKVKDL 248

Query: 238 SK--LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           ++  L E    ++K+D            R  Q+D +K        +E+   +  EI  + 
Sbjct: 249 AEAGLTEAYQIVVKQD------------RYAQVDVVKTAAKEALLAENPDADAREIDGLL 296

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             ++ KVVR+ ++    R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLG
Sbjct: 297 GSLEKKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLG 356

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +DS+ G Q + FM+HYNF P + GE   +G+P RREIGHG+LA R IH V+P 
Sbjct: 357 TERDAQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPT 416

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++
Sbjct: 417 AEEFPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVV 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +S  R ++ +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKI
Sbjct: 537 DQAISGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKI 596

Query: 596 ASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           AS   A  +A +E IR I ++    EV  +Y G+VV+++DFGAFV     +DGLVHISQ+
Sbjct: 597 AS---ANGDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQI 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + ERVA  SD ++ G  V VK+++ D +G+++LSMK
Sbjct: 654 AEERVANVSDYLEVGQEVKVKVMEVDRQGRVRLSMK 689


>gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 708

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/685 (49%), Positives = 483/685 (70%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  +GQDFFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +   SP +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           V+M+  SAAL +SG+PF GP+  A+V YIN Q+VLNP  ++ ++  LDL V+GT+ AVLM
Sbjct: 128 VTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGTEAAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA++L+E+ +L A++FGH++ + VI+AI++ A   A      +   + + L+ ++++
Sbjct: 188 VESEADRLTEEQMLQAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPAENTALKNKIAE 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D++  VVR  
Sbjct: 248 LAEAKLVEAYQITEKMARYDRIHEIADEVNEVLLAEDVEANTKEIHTIFHDLEKTVVRRS 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q +D L
Sbjct: 308 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDEL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPYT+R+V
Sbjct: 368 TGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEFPYTVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   ++  R  +
Sbjct: 488 GDMDFKVAGTEDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPREDI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            EF PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   E  AA
Sbjct: 548 SEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT---EGTAA 604

Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +E IR I ++    EV +IY G+V++++DFGAFV   G ++GLVHISQ+S +RV K SD 
Sbjct: 605 KEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVSDY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ G  V VK+L+ D +G+I+LSMK
Sbjct: 665 LQMGQEVKVKVLEIDRQGRIRLSMK 689


>gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
 gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
          Length = 713

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/686 (51%), Positives = 478/686 (69%), Gaps = 4/686 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T + ++    + LETG +ARQ+  AV+A+  +T VL +VV  +  ++GQDFFPLTVNYQE
Sbjct: 5   TKQFQYGQHTVTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA GKIPGG+ +RE RP+ENE L SR+IDR IRPLF + + NE QV+  V+  + + S
Sbjct: 65  KTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVNPQVS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P +V+M+  SAAL +SG+PF GP+  A+V  IN +YVLNP  DE  +  LDL V+GTQ A
Sbjct: 125 PDLVAMIGTSAALAISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLDLVVAGTQQA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           VLMVE EAN LSED +L A++FGH   + VI+AI++ A+   KE     +  KD + L E
Sbjct: 185 VLMVESEANLLSEDTMLGAVMFGHESMQVVIDAINEFAQEAGKEKWDWQAPQKD-ATLVE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++  + +  +  +  I +K  R  +I ++K+ M+    +E+   +  E   +F D++  +
Sbjct: 244 KVKSLAEAGIGEAYRITDKAERYGKIAEVKQAMIEQLVAENEEADTDEAGKIFHDVEKDI 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ +L  + R+DGRD + VR IS   G+L RTHGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRSRILAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQM 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L+GT  + F++HYNF P   GE   +GAP RREIGHGRLA+R I  V+P   +FPYT
Sbjct: 364 IDELTGTSTSRFLLHYNFPPYCVGETGMVGAPKRREIGHGRLAKRGIQAVMPSHEEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+GD  ++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAG + GITA+QMD+KI GI+ +IM  AL QAK  RLHIL+ M + + E 
Sbjct: 484 EDHLGDMDFKVAGNNEGITALQMDIKIDGITRDIMESALGQAKAARLHILSVMDEAIGEH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + PR   + I  D+I++VIG GG VIR + E T   + I DDGT+KIA+S   +
Sbjct: 544 RDELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKIAASDQND 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +AA + I+ +T   EV KIY+G+V +++DFGAFV     +DGLVHISQ++ ERV   +D
Sbjct: 604 ADAAIKRIKELTAEIEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVNDVND 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +K GDTV VK+L+ D +G+++LSMK
Sbjct: 664 YLKVGDTVPVKVLEIDRQGRVRLSMK 689


>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
 gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
          Length = 713

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            +    P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPNVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI+AI++ A   A      +  ++ 
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   ++++ +  L  +  I EK  R  +I  +  ++     +E    N  EI ++F D
Sbjct: 241 TALNNRIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R ++ EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREEISEFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I +IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ ERV
Sbjct: 601 TDGDQAKDAIARIEAITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIAHERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K +D +KEG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVTDYLKEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
           102972]
 gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
           102972]
          Length = 711

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/691 (49%), Positives = 481/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA  LSE+ +L A++FGH++ + VI+AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++ +   +E+   N  EI ++F D
Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAENEELNPKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSID 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ DDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A   I  IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ +R+
Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SDV+ EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDVLSEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
 gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
          Length = 700

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/694 (50%), Positives = 478/694 (68%), Gaps = 13/694 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETGRIARQ+ GAV+    +TVVL TVV  +   + +DF PLTVNYQERTY
Sbjct: 8   FQYGDHTVTLETGRIARQASGAVMVNMSDTVVLVTVVGKKDQGEPRDFLPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L+SR+IDR +RPLF   + NE Q++  V+  + E    +
Sbjct: 68  AAGKIPGGFFKREGRPSEKETLVSRLIDRPVRPLFPAGFTNEVQIVATVISMNNEVDADI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ASAAL +SG+PF+ P+   +V Y  G +VLNP   + + S LDL V+GT DAVLM
Sbjct: 128 PAMIGASAALAVSGIPFDSPLGAGRVGYHKGAFVLNPTFSQLESSDLDLVVAGTADAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           VE EAN LSE  +LDA+IFGH + + VI AI++LA+   K      P+  D +    L E
Sbjct: 188 VESEANCLSEQTMLDAVIFGHEQMQTVIAAINELAQEAGKPRWDWAPVEKDQRLAQALTE 247

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDIQ 299
              + + E  RV+    EK  R  ++  +++++++  +        W+E EI + F+ ++
Sbjct: 248 IAERPLGEAYRVA----EKQERLDRVSAVREEVMTRLTLGEEPTEGWSEREIGNAFKGLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VR  +L  + R+DGRD++TVR IS +V  L RTHGS++F RG+TQAIVV TLGT  D
Sbjct: 304 KKIVRGSILRGEPRIDGRDNKTVRPISIEVATLPRTHGSAIFTRGETQAIVVTTLGTGRD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++ G ++  FM+HYNF P + GE   MG P RREIGHGRLA+R I  V+P   + 
Sbjct: 364 AQIIDAIEGERKEPFMLHYNFPPYSVGETGFMGVPKRREIGHGRLAKRGIQAVMPSQEEC 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMATVCG+SLALMDAGVPI  PVAGIAMGL+K+  +F +L+DI
Sbjct: 424 PYVIRVVSEITESNGSSSMATVCGTSLALMDAGVPIKAPVAGIAMGLIKEESEFAVLTDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM +AL+QA+ GRLHIL++M+ V+
Sbjct: 484 LGDEDHLGDMDFKVAGTEEGVTALQMDIKINGITRQIMEVALEQARTGRLHILSKMNAVI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           ++ R ++  + PR+  M I P++IR+VIG GG  IR + E+TG  ++I DDGTV IAS  
Sbjct: 544 AKPRGEMSAYAPRLLTMKIDPEKIRDVIGKGGATIRQLTEETGTTIDIVDDGTVTIASVD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  E AR  I  +T   EV +IY+G+V K+MDFGAFV+    RDGLVHISQ+S  RV  
Sbjct: 604 KAAGEEARRRIELLTADVEVGRIYEGRVTKLMDFGAFVNILPGRDGLVHISQISNRRVES 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            S+ + EG  V VK+L+ D +G+I+LS+K +++ 
Sbjct: 664 VSEELAEGQRVRVKVLEVDRQGRIRLSIKAINEG 697


>gi|253686990|ref|YP_003016180.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259534139|sp|C6DKK7|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 706

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/683 (49%), Positives = 477/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ LSED +L A++FGH++ + VIE I+ L     K      + + +  LE+ + 
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWHAPEVNVSLEQRVQ 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K  + +   +E  + N GEI  +  +++  VVR+
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDVIKADVEAALLAEDETLNAGEIQEILGNVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+ ++FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKASEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690


>gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis
           SB2B]
 gi|187611289|sp|A1S467|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis
           SB2B]
          Length = 699

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/689 (50%), Positives = 480/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+DGAV+A+ G+T VL TVV  +    G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D +  P +V
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVDPQIEPDIV 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V Y+NG+YVLNP   E  GS LDL V+GTQ AVLMV
Sbjct: 129 SMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVAGTQSAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242
           E EA  L E+V+L A+++GH++ + VI AI++ A    K       P+  ++     L  
Sbjct: 189 ESEAKSLPEEVMLGAVVYGHDQQQVVINAINEFAAEAGKPRWNWTAPVKNEA-----LVA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ ++ +E L  +  I  K  R + + ++KK  ++     +   N  E   +   ++  V
Sbjct: 244 QIKELAEEGLTAAYQIMAKQERYEAVGEVKKATIAKLQEANPDVNVREAADLLGSLEKNV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++    R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRGRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY+
Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +  +
Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSA 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + +F PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIAS++   
Sbjct: 544 RPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASNNG-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +A RE IR I ++    EV ++Y G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 602 -DATREAIRRIEEITSEVEVGRLYTGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 661 VSDHLQLNQEVTVKVMEVDRQGRVRLSIK 689


>gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
           SWAT-3]
 gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
           SWAT-3]
          Length = 706

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/694 (50%), Positives = 481/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           SGT  AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 SGTAGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   ++++ +  L  +  I EK  R  +I ++  ++     SE    N  E+ S+F D
Sbjct: 241 TALNTRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSEDEEVNLKEVHSIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691


>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
 gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
          Length = 709

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/698 (48%), Positives = 482/698 (69%), Gaps = 13/698 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  I++    L LETG I+RQ+D AV+ +YG+TVVL  V     +K GQDFFPLT
Sbjct: 1   MFNKVTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+  V+  
Sbjct: 61  VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           D E    + +++ ASAA+ LSG+PF GP+  A+V YIN +YVLNP +   ++  LDL V+
Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPFFGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237
            T+ AV+MVE EA +LSE+V+L A++FGH + + VI+ I++LA    K     D+ D+  
Sbjct: 181 ATETAVMMVESEAKELSEEVMLGAVVFGHEQMQAVIKMIAELAAEAGK-----DAWDWVA 235

Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIV 292
               + L  +++++   D+  +  I  K  R  ++ ++  +++    +E +S  E  +I 
Sbjct: 236 PEPDTALIAKVAELAAADINAAFQIKAKGARSAKLSEITSRVLGELITEETSTAEANKIK 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
               +++AK VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV 
Sbjct: 296 GELFNLEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVA 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  DEQ +D+L G  ++ FM+HYN  P ATGE  R+G P RREIGHGRLA+R++   
Sbjct: 356 TLGTGRDEQVIDALQGEFKDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRSLIAA 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+ 
Sbjct: 416 LPDQADFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNR 475

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +L+DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM +AL QAK GR HIL
Sbjct: 476 VAVLTDILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITSQIMQVALAQAKEGRAHIL 535

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M   +S +  ++  F PR+ +M I P++IR+VIG GG VIR + E+TG  ++I +DGT
Sbjct: 536 GIMKAAMSSANTEMSAFAPRIIVMKINPEKIRDVIGKGGAVIRALTEETGTSIDITEDGT 595

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           VKIA +S  +   A+  I  IT   E+  +Y+G V+K++DFGA V     +DGL+HISQ+
Sbjct: 596 VKIACTSSEQGAEAQRRIAEITAEVEIGNVYEGTVLKLLDFGAIVSLIPGKDGLLHISQI 655

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + +RV   SD +KEGD V VK+++ D++G+++LSMK +
Sbjct: 656 AHQRVNAVSDFLKEGDIVKVKVVEADEKGRVRLSMKAL 693


>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
           denitrificans ATCC 25259]
          Length = 706

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/683 (50%), Positives = 481/683 (70%), Gaps = 14/683 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG IARQ+ GAV+    +T+VL TVV    +K GQDFFPLTV+YQE+TYA G+IPG
Sbjct: 15  VTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQEKTYAAGRIPG 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RESRP+E E LISR+IDR IRPLF + + NE Q+I  VM  + E S  + +++ AS
Sbjct: 75  GFLKRESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEVSADIPALIGAS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL LSGLPF+GPV  A+V +ING+YVLNP   E + S LDL V+GT+ AVLMVE EA +
Sbjct: 135 AALSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALDLVVAGTESAVLMVESEAME 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE------MSQMI 248
           L ED++L A++FGH + +  I AI++LA          D+ D++   E+      +  + 
Sbjct: 195 LPEDIMLGAVVFGHTQMQAAINAINELADEAGA-----DAWDWAPPAEDTAMVDRLKALA 249

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKK-MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           ++ L+ +  I +K  R   +D+++ K      +++  +     +   F  ++A VVR  +
Sbjct: 250 EDGLQQAYNIKQKRARMAAVDEVRSKAFAELITADMDTVAANHVKDAFHRLEAGVVRNRI 309

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L  + R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+VV TLGT  DEQ +D+L 
Sbjct: 310 LSGQPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALE 369

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G+  + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP   +F YT+R+VS
Sbjct: 370 GSYSDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGYTMRVVS 429

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG  L+LMDAG P+   VAGIAMGL+K+G+ F +L+DI GDEDHLG
Sbjct: 430 EITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVLTDILGDEDHLG 489

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT++G+TA+QMD+KI GI++ IM  AL QAK GR+HIL  M   +SE+  ++ 
Sbjct: 490 DMDFKVAGTENGVTALQMDIKITGITKEIMQAALTQAKEGRMHILGIMKASVSETH-EMS 548

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            + PR+  M I P++IR+VIG GG VIR + E+TG +++I +DG+VKIA +S+   E A+
Sbjct: 549 AYAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQIDIQEDGSVKIACTSMEAGELAK 608

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I  IT   EV K+Y+G V+K++DFGA V+    RDGL+HISQ++ ERV    D +KEG
Sbjct: 609 KRIEEITAEVEVGKVYEGPVIKLLDFGAIVNVLPGRDGLLHISQIAHERVNTIGDYLKEG 668

Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690
             V VK+L+ D++G+++LSMK +
Sbjct: 669 QVVRVKILEADEKGRLRLSMKAL 691


>gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 743

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/683 (49%), Positives = 476/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 41  QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 100

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 101 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 160

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +INGQ+VLNP ++E  Q  LDL V+GT  AVL
Sbjct: 161 LVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAVL 220

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A+++GH + + VIEAI +L     K     +  +  + L  ++ 
Sbjct: 221 MVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTALINKVK 280

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+I+ +F  +++++VR 
Sbjct: 281 ALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITAEDEEVSEGKIIDIFTALESQIVRG 340

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 341 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 400

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 401 LTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 460

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI GDEDH
Sbjct: 461 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDILGDEDH 520

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 521 LGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 580

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+     ++ 
Sbjct: 581 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 640

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  IT   EV   YKG+V+++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 641 VMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 700

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 701 VGQEVMVKVVEIDRQGRIRLTMK 723


>gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b]
          Length = 729

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/695 (47%), Positives = 480/695 (69%), Gaps = 2/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNYQE
Sbjct: 5   TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E S
Sbjct: 65  KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP R ++++  LDL ++GT+DA
Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243
           +LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +    L+  
Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLKAR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++ + + ++  +  I +K  R +++ +L+++ +S   +E+   N   I ++F +++  +V
Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADVIANMFGELERSIV 304

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q +
Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY L
Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI GDE
Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E R
Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEHR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S     +
Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKMAL 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  +V
Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVEEV 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
           DSS12]
 gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
           DSS12]
          Length = 705

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/689 (50%), Positives = 479/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQERTYA
Sbjct: 12  EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVNYQERTYA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D E +P V+
Sbjct: 72  AGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           SM+  SAAL +SGLPF GP+  A+V YING+Y+LNP + +  +  LDL V+GTQ AVLMV
Sbjct: 132 SMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLDLIVAGTQAAVLMV 191

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEE 242
           E EA  L E+++L ++ +GH + + VI+A+++L K  A +P    + D+S       L E
Sbjct: 192 ESEAASLPEEIMLGSVAYGHEQLQVVIDAVTEL-KAEAGKP----AWDWSAPVADADLVE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++  + + D   +  I  K+ R   ++ LK   ++    E++  +  E+  +   ++ KV
Sbjct: 247 KIRVLAEADFAAAYQITTKHERRDAVNALKSVAIAKLVEENADIDLSEVGKLLASLEKKV 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++  + R+DGR+ + VR ++   G+L RTHGS++F RG+TQA+V  TLGT  D Q 
Sbjct: 307 VRGRIIAGQPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQK 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           VDS+ G   N FM+HYNF P   GE   +G+P RREIGHG+LA R ++ V+P    FPY+
Sbjct: 367 VDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMNAVMPSAEDFPYS 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GD
Sbjct: 427 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 487 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIGTH 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  +    PR+  + I P++IR+VIG GG  IR + E+TG  + +DDDGTVKIASS+   
Sbjct: 547 RDDISAHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSNG-- 604

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV  IY G+VV+++DFGAFV     +DGLVHISQ++ ERVA 
Sbjct: 605 -EATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++ G  V VK+++ D +G+++LSMK
Sbjct: 664 VSDYLQTGQEVKVKVMEVDRQGRVRLSMK 692


>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
          Length = 708

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/687 (49%), Positives = 480/687 (69%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K+GQDFFPLTVNYQER+
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVNYQERS 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSINPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL +SG+PF GP+  A+V YI+ QYVLNP +DE + S LDL V+GT  AVL
Sbjct: 128 IVAMIGASAALSISGIPFNGPIGAARVGYIDDQYVLNPTVDELKSSRLDLVVAGTSSAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLE 241
           MVE EA+ L+E+ +L A++FGH + + VIE I+ LA    KE     P  I+ +  S++ 
Sbjct: 188 MVESEADLLTEEQMLGAVVFGHEQQQIVIENINALAAETNKEKWDWQPEAINEELHSRIA 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E   Q + +  R++    EK  R   +D +K+ + +   +E+ S +  EI  +   ++ K
Sbjct: 248 ELAEQRLGDAYRIT----EKQERYTNVDAIKEDVTNTLLAENESLDVAEINDILSGLEKK 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRTRVLKGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G   + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 364 VIDELMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNQSEFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ DD+++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDDYVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILTIMEEAINR 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I PD+I++VIG GG VIR + E+TG  + IDDDGTVKIA++  +
Sbjct: 544 PREEISEFAPRIHTIHINPDKIKDVIGKGGSVIRALTEETGTTIEIDDDGTVKIAATDSS 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + EAA   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAEAAIRRIEDITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAEKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 664 DYLQLGQEVPVKVLEIDRQGRIRLSIK 690


>gi|293391608|ref|ZP_06635942.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952142|gb|EFE02261.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 743

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/683 (49%), Positives = 476/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 41  QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 100

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 101 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 160

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +INGQ+VLNP ++E  Q  LDL V+GT  AVL
Sbjct: 161 LVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGTDKAVL 220

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A+++GH + + VIEAI +L     K     +  +  + L  ++ 
Sbjct: 221 MVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWDWVAPEPNTALINKVK 280

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+I+ +F  +++++VR 
Sbjct: 281 ALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITAEDEEISEGKIIDIFTALESQIVRG 340

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 341 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 400

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 401 LTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 460

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI GDEDH
Sbjct: 461 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDILGDEDH 520

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 521 LGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 580

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+     ++ 
Sbjct: 581 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 640

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  IT   EV   YKG+V+++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 641 VMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 700

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 701 VGQEVMVKVVEIDRQGRIRLTMK 723


>gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp.
           Marseille]
 gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 711

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/703 (50%), Positives = 487/703 (69%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+II+VM  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E  P + +M+ ASAAL ++G+PF GPV  A+V YI+GQYVLNP   +  +  LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLAKSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH + K VI+AI  L +   K  +    +    
Sbjct: 181 GTEIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRDGGKPEVQWSPAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++   +  LR +    +K  R  ++ D   ++ +  ++E +S      +  E+ +
Sbjct: 241 ALISRVAHFAEAKLRAAYQTKDKQARTTKLKDAFAEVNNELAAEAASIGAAAPDTAEVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAAL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G  F
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRVHILG 540

Query: 534 EMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           EM K V S +  +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G 
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS   A  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ+
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQN 693
           + ERV   +D ++EG  V VK+L+ DDRG++KLSMK  V ++N
Sbjct: 661 ANERVNAVADYLQEGQQVRVKVLETDDRGRLKLSMKAAVAEEN 703


>gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
 gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
          Length = 719

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/700 (49%), Positives = 479/700 (68%), Gaps = 12/700 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI +    L LETG IARQ+DGAVLA+   T VL TVV  +   +G DFFPLTVNYQE
Sbjct: 5   TKEIAFGDHTLVLETGEIARQADGAVLASMNGTQVLVTVVGKKEGGEGNDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVGKIPGG+ +RE RP+ENE LISR+IDR IRPLF   + NE Q+I  V+  + E S
Sbjct: 65  KFYAVGKIPGGFNKREGRPSENETLISRLIDRPIRPLFPDNFTNEVQIIATVLSLNPEIS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
             +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP R   ++  LDL V+GT+DA
Sbjct: 125 SDIIAMIGASAALAISGVPFNGPIGAARVGYKDGVYLLNPSRKALEESKLDLVVAGTKDA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKDFS 238
           +LMVE EA +LSEDV+  AI+FGH   K VI+AI +LA    K       P V ++    
Sbjct: 185 ILMVESEAKELSEDVMRGAIMFGHEMMKSVIKAIEELAGEAGKARWDWAAPAVDEN---- 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  ++ + K D+  +  I +K  R +++  LK++ ++   +E+       I ++F D+
Sbjct: 241 -LQVRIADIAKHDVEAAYLIKDKQERYQRLGVLKEQTIAALLAENEELKADVIGNMFGDL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   VRT +LD + R+DGRD +TVR I+ +  LL+RTHGS LF RG+TQAIVV TLG   
Sbjct: 300 ERATVRTRILDGEPRIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNER 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++   ++ FM+HYNF P + GE   +G+P RREIGHGRLA+RA+  VLP+ + 
Sbjct: 360 DAQMLDGINVESKDRFMLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVLPEASA 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY LR+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD F +L+D
Sbjct: 420 FPYVLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR+HIL  M+  
Sbjct: 480 ILGDEDHLGDMDFKVAGTEQGITALQMDIKITGITSEIMEQALEQALAGRIHILGIMNNA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+E R +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G V++ S 
Sbjct: 540 LAEHREELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDTGVVQLFSP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            +  +E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  
Sbjct: 600 DMDALEEAQKQIKALIAEVEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQ 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K  DV+KEG  + V +   D +G++KL  K   Q    P+
Sbjct: 660 KVEDVLKEGQEIEVFVAGVDKQGRVKLEWKDKPQTEVAPV 699


>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
          Length = 705

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/696 (49%), Positives = 474/696 (68%), Gaps = 5/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   + E AGR +  ETGR+ARQ+ G++LA  G+ VV       +    G DF PLT
Sbjct: 9   MFDVKKTQAEVAGRTISFETGRVARQAGGSILAQVGDVVVHVAATCAKQPLQGVDFMPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+  GG+ +RE RP+E E L SR+IDR IRPLF K Y +ETQVI  VM  
Sbjct: 69  VHYQEKTYAAGRFLGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVMSV 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P +V++   SAAL +S +PF  P+  ++V  I+G+++LNP  ++  + SLDL V+
Sbjct: 129 DEGTNPDIVAINGVSAALAISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESSLDLIVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT+DAVLM+E EA +LSE+ ++DAI FG    +PV++AI +L K+  KE +VI+ +   S
Sbjct: 189 GTRDAVLMIESEAKELSEEQMIDAISFGQAGYQPVLDAIEELVKLAGKEKLVIELAGGNS 248

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---SSWNEGEIVSVF 295
            +++ ++   + D+R +  I +K  R  +I+  +    + F+       +++  ++ S  
Sbjct: 249 DVQDAVNAAFEADVRAAYAITDKSARAAKIEAFRAAAQAKFAGTEDAPGAYSSNDVSSAM 308

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++ KVVR  ++    R+DGR +  VR I  QVG+L RTHGS+LF RG+TQA+V +TLG
Sbjct: 309 KSLEKKVVRRSIIAGNPRIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLG 368

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q  +SL G  +  FM+HYNF P + GE  R G P RREIGHGRLARR +  VLP 
Sbjct: 369 TESDMQMTESLEGVAKQRFMLHYNFPPYSVGEARRFGPPGRREIGHGRLARRGVEAVLPS 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F Y +R VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAG+AMGL+ + D + +
Sbjct: 429 MEKFGYAIRSVSEITESNGSSSMASVCGTSLALMDAGVPVKAAVAGVAMGLILEQDGYAV 488

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+T +Q+D+KIGG++  IM  AL QA  GR+HIL+EM
Sbjct: 489 LTDILGDEDHLGDMDFKVAGTREGVTTLQLDIKIGGLTREIMQEALAQAHAGRMHILDEM 548

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +   R  + +  PR+  M +  D+IR VIG GGKVIRGIVE TGAKV+I+DDGT+KI
Sbjct: 549 AKCMETPRGAIADHAPRMFTMKVKVDKIREVIGAGGKVIRGIVEATGAKVDIEDDGTIKI 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +    EAA++MI  I    EV  IY G+VVK+MDFGAFV   G  DGLVHISQ++  
Sbjct: 609 FAVTGDAGEAAKKMIEDIVAEVEVGAIYTGKVVKLMDFGAFVRVVGGTDGLVHISQIANH 668

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV K +D +KEG  V VK+L+ D +GKI+LSMK V+
Sbjct: 669 RVEKVADELKEGQEVRVKVLEVDRQGKIRLSMKDVE 704


>gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
 gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
          Length = 716

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/693 (48%), Positives = 492/693 (70%), Gaps = 3/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    +++    L +ETG I RQ+DGAV+ +YG+TVVL T V +++ ++GQDFFPLT
Sbjct: 9   MFNIVKKSVKFGDNTLTIETGEIGRQADGAVMVSYGDTVVLVTAVGNKNAREGQDFFPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L  R+IDR +RPLF K + NE Q++  VM  
Sbjct: 69  VDYQEKTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPLRPLFPKNFYNEIQIVATVMSS 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    + +++ ASAAL +SG+PF GPV  ++V YI+ ++V+NP   +   S LDL V+
Sbjct: 129 DSEIDSDIPAIIGASAALAISGIPFYGPVGASRVGYIDEKFVINPTKTQLVDSELDLVVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G+  AVLMVE EA +L E V+LDA++ GH   +PVI+ I++ AK  AK+P    +++ +K
Sbjct: 189 GSDAAVLMVESEAKELPEKVMLDAVLAGHKAMQPVIKMINEFAKEAAKDPWDWTAQETNK 248

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
            L  ++ ++  +DL  +  I  K  R +++ ++K K+++  ++E+++ NE   I + F +
Sbjct: 249 DLVSKIEKIAAKDLEKAFAIKAKGERSEKLSEIKDKVLAEVANENTTPNEMNAIKNEFFN 308

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++K+VR  +LD   R+DGRD+ TVR I  + G+L R HGS+LF RG+TQAIVV TLGT 
Sbjct: 309 LESKIVRNKILDGDPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTG 368

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+L G  ++ FM+HYNF P ATGE  R+G P RREIGHG+LA+R +   LP   
Sbjct: 369 RDEQIIDALQGEFKDRFMLHYNFPPYATGETGRVGTPKRREIGHGKLAKRGLSAALPSKE 428

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA++CG ++A+MDAGVP++  VAGIAMGL+K+ +   +L+
Sbjct: 429 DFDYTIRLVSEITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGLIKEDNRVAVLT 488

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD+GITA+QMD+KI GI+  IM +AL QA+ G  HIL  M K
Sbjct: 489 DILGDEDHLGDMDFKVAGTDNGITALQMDIKITGITSEIMQVALSQAREGIDHILKIMKK 548

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L   R ++ +F P++  + I PD+IR+VIG GG VI+G+  +TGA ++IDDDG VK+A 
Sbjct: 549 TLKAPRTEMSQFAPQILTIKIHPDKIRDVIGKGGAVIKGLAAETGATIDIDDDGLVKVAC 608

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++    +AA + I+ IT   EV+++Y G+V+K++DFGA V     +DGL+HISQ++ ER+
Sbjct: 609 TNGESGQAAIDRIKEITADVEVDQVYDGKVIKILDFGAIVSLLPGKDGLLHISQIAHERI 668

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               D + EGD V VK+++ DD+G++++S K +
Sbjct: 669 KAVKDHLSEGDEVKVKVIEVDDKGRVRVSAKAL 701


>gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
 gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
          Length = 700

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/697 (49%), Positives = 482/697 (69%), Gaps = 12/697 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  + +DFFPLTVNYQE+TY
Sbjct: 8   FQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E LISR+IDR +RPLF   +KNE QVI  V+  + E +P +
Sbjct: 68  AAGKIPGGFFKREGRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPEINPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           V+M+A SAAL +SG+PF GP+  A+V YI+GQY+LNP   E + S L+L VSGT++AVLM
Sbjct: 128 VAMIATSAALSISGMPFNGPIGCARVGYIDGQYLLNPTKTELEASDLNLVVSGTENAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLE 241
           VE EA  LSEDV+L A+++GH + + V+ AI++ A   A+       P+  D+ D + + 
Sbjct: 188 VESEAGILSEDVMLGAVVYGHEQQQVVVSAINEFAAEVARPKWDWSAPVRNDALD-ALIA 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E    I+E  ++S    +K  R   +  +  ++     +   +    +I     D++  
Sbjct: 247 TEAQSRIEEAYQIS----DKGDRYDALKIITSEVKEKLLAADETLEAKQIGEYLHDLEKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT ++  + R+DGRD E+VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+ D Q
Sbjct: 303 VVRTRIIKGEPRIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPDLEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 423 TVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGDEFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  RLHIL+ M + +SE
Sbjct: 483 DEDHLGDMDFKVAGTSEGITALQMDIKIEGITKEIMQIALNQAKAARLHILSVMDEAISE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + IP D+IR+VIG GG  IR + E+TG  + I+DDGTVKIA++S  
Sbjct: 543 GRADISEFAPRIHTIKIPTDKIRDVIGKGGATIRALCEETGTTIEIEDDGTVKIAATSAE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + E A   I+++T   EV  IY G+VV++ DFGAFV+    +DGLVHISQ+  ERV K S
Sbjct: 603 QAEDAINRIKTLTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVS 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           D +KEG  V VK+L+ D +G+++LS+K   +    P+
Sbjct: 663 DYLKEGQEVKVKVLEVDRQGRVRLSIKEAAEKKDAPV 699


>gi|89095210|ref|ZP_01168133.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
           MED92]
 gi|89080507|gb|EAR59756.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
           MED92]
          Length = 701

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/698 (49%), Positives = 488/698 (69%), Gaps = 6/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V T   ++ G+ + +ETGR+ARQ+ G+VL   G   VL TVV  +  K GQDFFPL+
Sbjct: 1   MFQVTTKTFQFGGQEVTIETGRVARQATGSVLVKMGGNEVLCTVVGAKEAKAGQDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YAVG+IPGG+ +RE+RP+E E L SR+IDR IRPLF K Y NE QV+  V+  
Sbjct: 61  VHYQEKYYAVGRIPGGFFKREARPSEKETLTSRLIDRPIRPLFPKGYMNEVQVVCTVVSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGS-LDLFV 178
           D ++ P + +M+  SAAL +SG+PF+GP+  A+V +  +  Y+LNP  ++ Q S LD+ V
Sbjct: 121 DKKNDPDIAAMIGTSAALAISGIPFQGPIGAARVGFTEDAGYLLNPSFEQLQTSELDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KD 236
           +GT DAVLMVE EA +LSED +L A++F H E + VI A+++LA    KE  V ++  KD
Sbjct: 181 AGTADAVLMVESEAQELSEDEMLGAVLFAHQEMQVVINAVNELAAEAGKEAWVWEAPAKD 240

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVF 295
              L  ++   + E +  +  + +K  R   + +L+ K V   + E     + G++  + 
Sbjct: 241 -EALIAKVRAEVGEGITAAYQVADKMQRQNALAELRAKAVEALAGEEEGQPSAGDVSGIV 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             ++ ++VR  +++ + R+DGRD++TVR I  Q+ +LQ THGS+LF RG+TQAI   TLG
Sbjct: 300 SSLEKEIVRGRIVNGEPRIDGRDTKTVRGIDVQIDVLQGTHGSALFTRGETQAIATCTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D+Q +D++ G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP 
Sbjct: 360 TARDQQIIDAIEGERKDPFMLHYNFPPYSVGECGRMGGAGRREIGHGRLARRGVAAVLPT 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGLVK+GD F +
Sbjct: 420 QEEFPYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEGDKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+E IM +AL+QA   R+HIL EM
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTERGVTALQMDIKITGITEEIMDIALEQAYEARVHILKEM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           + V+  +R +L +  P +  + I P++IR+VIG GG  IR + E+TGA ++I+DDGTV++
Sbjct: 540 ATVIGYARPELPDNAPALTQLKINPEKIRDVIGKGGATIRALTEETGASIDIEDDGTVRV 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +   A  +AA + I  IT   E+ +IYKG+VV++ DFGAFV+    +DGLVHISQ++ +
Sbjct: 600 YAEDKAAAKAATDKIIEITAEAEIGQIYKGKVVRIEDFGAFVNILPGKDGLVHISQIANK 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           RV K +D ++    V VK+LD D RG+IKLSMK ++ +
Sbjct: 660 RVEKVTDYIQMDQEVTVKVLDVDQRGRIKLSMKDIEAD 697


>gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 711

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/691 (49%), Positives = 481/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA  LSE+ +L A++FGH++ + VI+AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++ +   +E+   N  EI ++F D
Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAENEELNPKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSID 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A   I  IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ +R+
Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SDV+ EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDVLSEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
 gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
          Length = 704

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/692 (48%), Positives = 476/692 (68%), Gaps = 2/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     +W    + LETG IARQ+ G+VL T  +T+VLATVV  R  K GQ FFPLT
Sbjct: 1   MFEIAKKTFQWGNHTVTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA G+IPGG+ +RE RPTE E L +R+IDR IRPLF + + NE QV++ V+  
Sbjct: 61  VDYFEKFYAAGRIPGGFFKREGRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +M+ ASAAL +SG+PF GPV  A+V YI+GQYVLNP   +  +  LDL V+
Sbjct: 121 NPEIDADIPAMIGASAALAISGVPFNGPVGAARVGYIDGQYVLNPSASQLKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT  AVLMVE EA++LSEDV+L A++FGH + + VI+AI +L +   K E      +  +
Sbjct: 181 GTDQAVLMVESEASELSEDVMLGAVVFGHEQMQTVIQAIEELVEAGGKAEWEWTAPEKNT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L E +  +  + +R +  +  K  R ++I  ++  + +  ++E +     E+  +  ++
Sbjct: 241 ALIERVHGLAGDAMRDAYKLRVKQERSQRIKQIEADVQAQLAAEENPPAATEVGDILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q+ +VR  +L  + R+DGRD+ TVR IS + G+L R HGS+LF RG+TQA+VV TLGT  
Sbjct: 301 QSSIVRNQILSGEPRIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+++G  R  FMM YN  P ATGE  R+G P RRE+GHGRLA+RAI  ++P    
Sbjct: 361 DEQIIDAITGEYRERFMMQYNMPPYATGETGRIGTPKRREVGHGRLAKRAITALVPSQED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+ + VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FAYSIRLVSEITESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM +AL QA+  R+HIL +M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L +F PR+  M I P++IR+VIG GG  IR I E+TG  ++I DDG++ IA+ 
Sbjct: 541 IPAARTELSDFAPRMYQMKINPERIRDVIGKGGATIRAITEETGTTIDIQDDGSITIAAV 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A++ I  +T   E+ KIY G V+K+++FGA V     RDGL+H+SQ++ ERV 
Sbjct: 601 DAEAARRAQQRIADLTAEVEIGKIYNGTVLKILEFGAIVQVLPGRDGLLHVSQIAQERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  D VKEG +V VK+++ DD+G+++LSMK V
Sbjct: 661 KVEDYVKEGQSVRVKVIEADDKGRLRLSMKAV 692


>gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387489|sp|Q65VB0|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E]
          Length = 704

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/690 (49%), Positives = 479/690 (69%), Gaps = 16/690 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  +VV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--------EPIVIDSKDFS 238
           MVE EA+ L+E+ +L A++FGH + + V+EAI +      K        EP   DS   S
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAEAGKPRWDWVAPEP---DSALIS 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           K++      + +  R++    EK VR +QID +K  +++  ++E    +EG+IV +F  +
Sbjct: 244 KVKAIAENRLGDAYRIT----EKQVRYEQIDAIKADVIAQITAEDEEVSEGKIVDIFTAL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQ++ VVTLGT  
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTER 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G +++ F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 360 DAQILDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+ D F++LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDDKFVVLSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + 
Sbjct: 480 ILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R ++ EF PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+ 
Sbjct: 540 ISAPRAEISEFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++     I  IT   E   +Y G+V ++ DFGAFV   G ++GLVHISQ++ ERV 
Sbjct: 600 DGNAVKTVMARIEDITAEVEAGAVYTGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K SD ++ G  V VK+++ D +G+I+L+M+
Sbjct: 660 KVSDYLQVGQEVQVKVVEIDRQGRIRLTMR 689


>gi|218710441|ref|YP_002418062.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus
           LGP32]
 gi|254782746|sp|B7VJH3|PNP_VIBSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218323460|emb|CAV19637.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus LGP32]
          Length = 706

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/694 (49%), Positives = 488/694 (70%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL +SG PF GP+  A+V +I+G+ VLNP   E + S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A   A      ++    
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++++ +  L  +  I EK  R +Q+  +K   V    ++  + +E EI  +   
Sbjct: 241 TELKAQVAELAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691


>gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Lens]
 gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Lens]
          Length = 729

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/695 (47%), Positives = 480/695 (69%), Gaps = 2/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNYQE
Sbjct: 5   TKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E S
Sbjct: 65  KFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP R ++++  LDL ++GT+DA
Sbjct: 125 PDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTKDA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           +LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+  
Sbjct: 185 ILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLKAR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++ + + ++  +  I +K  R +++ +L+++ +S   +E+   N   I ++F +++  +V
Sbjct: 245 INDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADVIANMFGELERSIV 304

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q +
Sbjct: 305 RNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQIL 364

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY L
Sbjct: 365 DGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPYVL 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI GDE
Sbjct: 425 RIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E R
Sbjct: 485 DHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAEHR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S     +
Sbjct: 545 TELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKIAL 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+   R  K  +V
Sbjct: 605 EEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAARTQKVEEV 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC
           51908]
 gi|226702688|sp|B1KRQ5|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 702

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/685 (51%), Positives = 478/685 (69%), Gaps = 10/685 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ++ AVLA+ G+T VL TVV  ++   G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+ENE LI+R+IDR IRPLF   +KNE QVII V+  D E +P V+
Sbjct: 69  AGKIPGGFFKREGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           SM+  SAAL +S LPF GP+  A+V Y NG+YVLNP + +  +  LDL V+GTQ AVLMV
Sbjct: 129 SMIGTSAALSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLDLVVAGTQGAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQ 246
           E EA  L E+V+L  +++GH++ + VI AI++L     K        ++D + L E++  
Sbjct: 189 ESEAASLPEEVMLGGVVYGHDQQQVVINAINELTAEAGKTKWDWTAPAED-TDLVEKIKG 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + + +L  +  I +K+ R   +  LK   V+    E++  +  E+  +   ++ KVVR+ 
Sbjct: 248 LAEAELTNAYQIADKHERRDAVIALKNAAVAKLVEENADVDLREVDKLLGSLEKKVVRSR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLGT  D Q VDS+
Sbjct: 308 IISGSPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSI 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY++R+V
Sbjct: 368 MGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYSVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +S  R  +
Sbjct: 488 GDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAISGHREDI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIAS   A  EA 
Sbjct: 548 SDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS---ANGEAT 604

Query: 607 REMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +E IR I ++    EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA  SD 
Sbjct: 605 KEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANVSDY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ G  V VK+++ D +G+++LSMK
Sbjct: 665 LQVGQEVKVKVMEVDRQGRVRLSMK 689


>gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
           129PT]
 gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
           2336]
 gi|123031253|sp|Q0I2T0|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037307|sp|B0UTJ5|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT]
 gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336]
          Length = 713

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/691 (49%), Positives = 479/691 (69%), Gaps = 2/691 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP ++E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE EA+ L+E+ +L A++FGH + + VIEAI + A    K      + + + +  E  +
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQIVIEAIKEFAAEAGKPRWDWTAPEANTILIEKVK 246

Query: 247 MIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            I E+     + I EK  R +QID +K  +++  ++E  + +EG+I+ +F  +++++VR 
Sbjct: 247 SIAENRLGDAYRITEKQARYEQIDLIKADVITQVTAEDETISEGKIIDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RILRGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPY +R+
Sbjct: 367 LTGEKTDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDNFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG  +R + E+TG  ++IDDDGTVKIA+     ++ 
Sbjct: 547 ISDFAPRIYTMKIDPKKIKDVIGKGGATVRSLTEETGTSIDIDDDGTVKIAAVDKNAVQE 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  IT   EV  +YKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD + 
Sbjct: 607 VMSRIEDITAEVEVGVVYKGKVTRLADFGAFVALVGNKEGLVHISQIAEERVEKVSDYLA 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            G  V VK+L+ D +G+I+L+MK + ++  K
Sbjct: 667 IGQEVIVKVLEIDRQGRIRLTMKELAKDQTK 697


>gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 706

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/683 (49%), Positives = 475/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +S K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + SP 
Sbjct: 68  YAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP +DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA  LSED +L A++FGH + + VI+ I+ L     K      + + +  LE+ + 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWDWHAPEVNVSLEQRVQ 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K  +V+   +E  + N G+I  +  +++  VVR+
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690


>gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
 gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
          Length = 721

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/685 (49%), Positives = 475/685 (69%), Gaps = 2/685 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI +    L LETG +ARQ+DGAV A+   T VLATVV  +   +   FFPLTVNYQE
Sbjct: 5   TKEIAFGDHTLILETGEVARQADGAVFASMNGTQVLATVVGKKDGGENSGFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVGKIPGG+ +RE RPTE E LISR+IDR IRPLF + + NE QVI  V+  + E S
Sbjct: 65  KFYAVGKIPGGFNKREGRPTELETLISRLIDRPIRPLFPEGFCNEVQVIATVLSLNPEVS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P +V+M+A+SAAL LSG+PF GP+  A+V Y +G Y+LNP R + +   LDL V+GT++A
Sbjct: 125 PDIVAMIASSAALALSGVPFNGPIGAARVGYRDGIYLLNPSRKELEHSKLDLVVAGTKNA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243
           +LMVE EA +LSED++  AI+FGH   K VI+AI +LA    K       ++    L+  
Sbjct: 185 ILMVESEAKELSEDIMRGAIMFGHEMMKNVIKAIEELAAQAGKTRWDWSPREVDVNLQSR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +S MIK ++  +  I +K  R +++ +LK + ++   +E+   N   I ++F ++++  V
Sbjct: 245 VSDMIKHEVEAAYLIKDKQERYQRLAELKDQTITALQAENEELNADVISNIFVELESATV 304

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +LD + R+DGRD +TVR IS +  LL+R HGS LF RG+TQAIVV TLG   D Q +
Sbjct: 305 RNRILDGEPRIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQIL 364

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+++G  ++ FM+HYNF P + GE   +G+P RREIGHGRLA+RAI  VLP++  FPY L
Sbjct: 365 DNITGESKDRFMLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRAIMAVLPESNDFPYVL 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI GDE
Sbjct: 425 RVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL QA  GR++IL  M+  L+E R
Sbjct: 485 DHLGDMDFKVAGTEHGITALQMDIKIQGITSAIMEQALDQALEGRMYILGVMNNALAEHR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L +  PR+  M +  D+IR +IG GG  I+G+++ TG  ++IDD G V++ S  L  +
Sbjct: 545 EELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIDSTGVSIDIDDTGVVQLFSPDLQAL 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++ I+S+    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K   V
Sbjct: 605 EEAQKQIKSLIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQKVDTV 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++EG  + V +   D +G++KL  K
Sbjct: 665 LQEGQEIEVFVAGIDKQGRVKLEWK 689


>gi|254507523|ref|ZP_05119657.1| 3' exoribonuclease family, domain 2, protein [Vibrio
           parahaemolyticus 16]
 gi|219549593|gb|EED26584.1| 3' exoribonuclease family, domain 2, protein [Vibrio
           parahaemolyticus 16]
          Length = 709

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/694 (49%), Positives = 486/694 (70%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++  A++       +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R ++ EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREEISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   E  AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1]
 gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter sp. ADP1]
          Length = 697

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIIRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAAL ++G PF GP+ GA+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMDADIAAMLGASAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  ++AI + A    A E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPTKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 TLLEQLKAAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAYAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARAEISAHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ERV
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERV 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  SDV+KEG  V V++ D D+RG+IKLSMK ++Q
Sbjct: 662 ANVSDVLKEGQDVKVQVADVDNRGRIKLSMKDIEQ 696


>gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 706

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/683 (49%), Positives = 476/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + SP 
Sbjct: 68  YAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP +DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ LSED +L A++FGH + + VI+ I+ L     K      + + +  LE+ + 
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNVSLEQRVQ 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K  +V+   +E  + N G+I  +  +++  VVR+
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690


>gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
 gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
          Length = 702

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/693 (50%), Positives = 482/693 (69%), Gaps = 5/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T   E+  + + LETGRIARQ+ GAVL T G+  VLATVV  ++ K GQDFFPL+V+Y
Sbjct: 3   ITTKTFEFGNQTVTLETGRIARQATGAVLCTLGDAQVLATVVGAKTAKPGQDFFPLSVHY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+  VM  + +
Sbjct: 63  QERTYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGT 181
               + +M+A SAAL +SG+PF GP+  A+V + + + Y+LNP   E  GSL D+ V+GT
Sbjct: 123 LDADIPAMLATSAALAISGIPFNGPIGAARVGFNDEEGYLLNPSNSELDGSLLDMVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-- 239
           +DAVLMVE EA +L+ED +L A+++ H E +  I AI++      K P    + + +K  
Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLYAHKEMQTAITAINEFVSESGK-PRWEWTAEAAKEG 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L + +       +  +  I EK  R  ++ ++++  V+   SE   ++E ++   F  ++
Sbjct: 242 LTDAVQLGFATQIEEAYGISEKMARYTKLGEIREAAVAALVSEEGEYDEADVTGAFAKLE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  ++D + R+DGRD++TVR I+ +VGLL++THGSSLF RG+TQAI   TLGT  D
Sbjct: 302 KNIVRRRVIDGQPRIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  D L+G  ++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP   +F
Sbjct: 362 AQISDGLAGENKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEDEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGLVK+ D F +L+DI
Sbjct: 422 PYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM +AL QA   R +IL EM+ V+
Sbjct: 482 LGDEDHLGDMDFKVAGTEEGITALQMDIKIEGINEEIMDIALTQAMDARKYILREMATVI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             +R ++    P +  + I P++IR+VIG GG  IR I E+TGA +++DDDGTV+I ++ 
Sbjct: 542 GYARPEVSPNAPSMATVKIDPEKIRDVIGKGGATIRSITEETGASIDLDDDGTVRIYAAD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  +AA   I  IT   E++K+Y+G+VV++ +FGAFV+    +DGLVHISQ++ ER+  
Sbjct: 602 KASSDAALLKIHEITAEAEIDKLYQGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIRA 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            SDV+ EG  V VK+LD D RG+IKLSMK V +
Sbjct: 662 VSDVLAEGQDVIVKVLDVDARGRIKLSMKEVTE 694


>gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 742

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/690 (50%), Positives = 472/690 (68%), Gaps = 11/690 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETGR+ARQ+ GAVL + G+T VL TVV  +  ++G+ FFPL+V+Y E
Sbjct: 5   TKTFQFGNDTVTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSVHYVE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  V+  + +  
Sbjct: 65  KAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAENDVD 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDE-DQGSLDLFVSGTQD 183
           P + +M+  SAAL +SG+PF GP+ GA+V Y     YVLNP      +  LD+ V+GT+D
Sbjct: 125 PDIAAMIGTSAALSISGIPFNGPIGGARVGYTQEAGYVLNPSYSALAESELDMVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDF-S 238
           AVLMVE EA++L ED++L A++F H EC+ V++AI++LAK   K      +  ++ +  +
Sbjct: 185 AVLMVESEASELPEDIMLGAVLFAHQECQAVVQAITELAKDAGKPRWEWSVAEENAELKA 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + E+    I +  R +    +K  R  ++   + + V+   +E +      + S F  +
Sbjct: 245 AVAEQFGAAIADAYRTT----DKMERYGKLTASRDEAVAALVNEEAGVTADAVKSAFSKL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + VR  ++  + R+DGRD+ TVR I  +VG+L + HGSSLF RG+TQAIVV TLG   
Sbjct: 301 EKQTVRKSVVAGEPRIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLGNAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF   + GE  RMG+ SRREIGHGRLARR +  VLP    
Sbjct: 361 DSQIIDALEGERRDPFMLHYNFPSYSVGECGRMGSTSRREIGHGRLARRGVAAVLPTQED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSEITES+GSSSMA+VCG+SLA+MDAGVP+  PVAGIAMGLVK+   F +L+D
Sbjct: 421 FPYTIRIVSEITESNGSSSMASVCGASLAMMDAGVPLKAPVAGIAMGLVKEESGFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL QA + RLHIL EM+KV
Sbjct: 481 ILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALGQALQARLHILAEMNKV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR ++ E  PR E + + PD+IR++IG GG  IR I E+TGA V+IDD G VK+ ++
Sbjct: 541 ISTSRTEVSENAPRFETIKVDPDKIRDIIGKGGATIRSITEETGASVDIDDTGLVKVYAA 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++AA   I  IT   E+  IY+G V +++DFGAFV F   +DGLVHISQ++ ERV 
Sbjct: 601 DNEALQAAMNKIGEITAEAEIGAIYEGVVARIVDFGAFVTFLPGKDGLVHISQIAEERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             SD +KEG TV VK LD D RG+IKLS+K
Sbjct: 661 AVSDYLKEGQTVKVKCLDVDQRGRIKLSIK 690


>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
           defluvii]
 gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
           defluvii]
          Length = 705

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/686 (51%), Positives = 480/686 (69%), Gaps = 3/686 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V+IE AGR L LETGRIA+Q+DGA+ ATYG+TVVLAT V  ++ K G DF PLTV+YQ
Sbjct: 3   HVVDIELAGRRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+TYA GKIPGGY +RE RP+E E+L SR+IDR +RPLF + Y  ETQVI +V+  D   
Sbjct: 63  EKTYAAGKIPGGYFKREGRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIASVLSADKTG 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
              V+ ++AASAAL +S +PF GP+ G ++  +NGQ+V+NP L+  + S L L V+GT D
Sbjct: 123 VSDVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETSDLHLVVAGTAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEE 242
           AV+MVE  AN+L E  +L+AI   H+E K ++  I +L K+  K + +V+     + L E
Sbjct: 183 AVMMVEAGANELPEATMLEAIELAHSEIKKIVAKIEELRKLVGKVKRVVVQEAIDAALTE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++  ++   +R +  IP K  R +++D +  + V+   S+  + +   +  +F  ++   
Sbjct: 243 QVRALVAGPIREAILIPNKSARQERLDQVLAETVAKLKSDEPNRDR-HVKIIFHGLEYTE 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L+K+VR DGR    +R I+ +VG+L R HGS++F RG+TQ++ VVTLGT +DEQ 
Sbjct: 302 VRNMILEKRVRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQR 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D+L G     FM+HYNF P + GE   + +P RRE+GHG LA RA+  ++P   +FPYT
Sbjct: 362 IDALEGEYMRTFMLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEI ES+GSSSMATVCG +LAL+DAGVPI +PVAGIAMGL+K+GD  ++LSDI G 
Sbjct: 422 VRIVSEILESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQVLVLSDILGL 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT +G+TA+QMD+KIGGI+  +M  AL QAK GRLHIL  M++ L+E 
Sbjct: 482 EDHLGDMDFKVTGTKNGVTALQMDIKIGGITAGLMREALAQAKAGRLHILGCMAQALTEP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  F PR+  M I  D+IR+VIG GGK+IR I+ +TG K+N++D G V IASS  A 
Sbjct: 542 RTKLSAFAPRIFPMKIKQDKIRDVIGPGGKMIRSIIAETGVKINVEDTGDVTIASSDEAS 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A +MI+ +T+  EV KIY G V K+MDFGAFV      DGLVHISQL+  RV   +D
Sbjct: 602 AQKAIDMIKRLTEEVEVGKIYLGTVRKIMDFGAFVEVLPGTDGLVHISQLAHHRVKAVTD 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            V EGD V VK+L+ D +GKI+LS K
Sbjct: 662 EVSEGDQVMVKVLEIDKQGKIRLSRK 687


>gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           succinogenes 130Z]
 gi|187470960|sp|A6VR10|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           succinogenes 130Z]
          Length = 707

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/684 (49%), Positives = 480/684 (70%), Gaps = 4/684 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  +VV  + +K+GQDFFPLTV+YQER+
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVDYQERS 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALALSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEM 244
           MVE EA+ L+E+ +L A++FGH + + VIEAI +L K   K     V    D + L  ++
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKEAGKPRWDWVAPEPD-TALINQV 245

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
             + +  L  +  I EK VR +QID +K  +++  ++E+   +EG+IV +F  +++++VR
Sbjct: 246 KVIAESRLGDAYRITEKQVRYEQIDAIKADVIAQITAENEEVSEGKIVDIFTALESQIVR 305

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ VVTLGT  D Q +D
Sbjct: 306 GRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERDAQILD 365

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+G +++ F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P  ++FPY +R
Sbjct: 366 ELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEFPYVVR 425

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+ D F++LSDI GDED
Sbjct: 426 VVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEEDKFVVLSDILGDED 485

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + ++  R 
Sbjct: 486 HLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIAAPRA 545

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ E+ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+     ++
Sbjct: 546 EISEYAPRIYTMKIDPKKIKDVIGKGGATIRTLTEETGTSIDIDDDGTVKIAAIDGNAVK 605

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                I  IT   E   +Y G+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD +
Sbjct: 606 EVMARIEEITAEVEAGAVYTGKVTRLADFGAFVAILGNKEGLVHISQIAEERVEKVSDYL 665

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           + G  V VK+++ D +G+I+L+MK
Sbjct: 666 QVGQDVQVKVVEIDRQGRIRLTMK 689


>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
 gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
          Length = 711

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/708 (49%), Positives = 495/708 (69%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP RL   + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRLQMKESALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI +L +   K     D +  +K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAAK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291
            E     +S++ + DL  +  I +K  R  ++ ++      K      ++  ++ ++  +
Sbjct: 241 NEALITRVSELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTAAADKASV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 RFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS++   +  A+  I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +  D   G+P
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAPQGEP 708


>gi|59711097|ref|YP_203873.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri ES114]
 gi|75354543|sp|Q5E7L1|PNP_VIBF1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|59479198|gb|AAW84985.1| polynucleotide phosphorylase (PNPase) [Vibrio fischeri ES114]
          Length = 709

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/684 (49%), Positives = 479/684 (70%), Gaps = 8/684 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           ++    + LETG IARQ+  AV+A+  +T V  +VV  +    GQDFFPLTVNYQERTYA
Sbjct: 11  QYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYA 70

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  + E +P ++
Sbjct: 71  AGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+  SAAL ++G+PF GP+  A+V +ING+ VLNP   E + S LDL VSGT+ AVLMV
Sbjct: 131 TMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVVSGTEGAVLMV 190

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247
           E EA+ L+E+ +L A++FGH + + VI AI++ A   A      +  ++ + L   ++++
Sbjct: 191 ESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWDWVAPEENTVLNARIAEL 250

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            +  L  +  I EK  R  +I ++  ++     SE+   N  E+ ++F D++  VVR  +
Sbjct: 251 AEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHDLEKTVVRRSI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q +DSL 
Sbjct: 311 IAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLM 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPYT+R+VS
Sbjct: 371 GEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIEEFPYTVRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL  M + +S +R ++ 
Sbjct: 491 DMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDEAISGAREEIS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++  A   AA+
Sbjct: 551 EFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAATEGA---AAK 607

Query: 608 EMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           E IR I ++    EV KIY G+V++++DFGAFV   G ++GLVHISQ++ ER+ K +D +
Sbjct: 608 EAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERIEKVADHL 667

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           + G  V  K+L+ D +G+I+LS+K
Sbjct: 668 QVGQEVKTKVLEIDRQGRIRLSIK 691


>gi|86148613|ref|ZP_01066896.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
           MED222]
 gi|85833604|gb|EAQ51779.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
           MED222]
          Length = 706

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/694 (49%), Positives = 487/694 (70%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL +SG PF GP+  A+V +I+G+ VLNP   E + S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A   A      ++    
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ ++++  +  L  +  I EK  R +Q+  +K   V    ++  + +E EI  +   
Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691


>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383]
 gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
          Length = 715

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/699 (49%), Positives = 489/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSEDV+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEW--DWQPAPK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++     +    + S+      ++  +
Sbjct: 241 NEPLIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDASAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTNSDGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|197336129|ref|YP_002155245.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
 gi|226704830|sp|B5FA83|PNP_VIBFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|197317619|gb|ACH67066.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
          Length = 709

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/684 (49%), Positives = 480/684 (70%), Gaps = 8/684 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           ++    + LETG IARQ+  AV+A+  +T V  +VV  +    GQDFFPLTVNYQERTYA
Sbjct: 11  QYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYA 70

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  + E +P ++
Sbjct: 71  AGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+  SAAL ++G+PF GP+  A+V +ING+ VLNP   E + S LDL VSGT+ AVLMV
Sbjct: 131 TMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVVSGTEGAVLMV 190

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247
           E EA+ L+E+ +L A++FGH++ + VI+AI++ A   A      +  ++ + L   ++++
Sbjct: 191 ESEADNLTEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPAWDWVAPEENTVLNSRIAEL 250

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            +  L  +  I EK  R  +I ++  ++     SE+   N  E+ ++F D++  VVR  +
Sbjct: 251 AEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHDLEKTVVRRSI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D Q +DSL 
Sbjct: 311 IAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLM 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPYT+R+VS
Sbjct: 371 GEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIEEFPYTVRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL  M + +S +R  + 
Sbjct: 491 DMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDEAISGAREDIS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++  A   AA+
Sbjct: 551 EFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAATEGA---AAK 607

Query: 608 EMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           E IR I ++    EV KIY G+V++++DFGAFV   G ++GLVHISQ++ ER+ K +D +
Sbjct: 608 EAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERIEKVADHL 667

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           + G  V  K+L+ D +G+I+LS+K
Sbjct: 668 QVGQEVKTKVLEIDRQGRIRLSIK 691


>gi|84387281|ref|ZP_00990302.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
 gi|84377928|gb|EAP94790.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
          Length = 706

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/691 (49%), Positives = 483/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL +SG PF GP+  A+V +I+G+ VLNP   E + S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A   A      ++    
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ ++++  +  L  +  I EK  R +Q+  +K   V    ++  + +E EI  +   
Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKSDTVEALIAQDENLDEREIRGMLGS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAQEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMK 691


>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           atrosepticum SCRI1043]
 gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 706

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/689 (49%), Positives = 473/689 (68%), Gaps = 2/689 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + SP 
Sbjct: 68  YAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GTQ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLDLVVAGTQGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA  LSED +L A++FGH + + VIE I+ L     K      +   +  LE+ + 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPAVNVSLEQRVQ 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q++ +K  +V+   +E  + N GEI  +  +I+  VVR 
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVNVIKTDVVAALQAEDETLNAGEIQEILGNIEKNVVRG 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTV+IAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVRIASTDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            G  V VK+L+ D +G+++LS+K  +  T
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIKEANPQT 696


>gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591]
 gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591]
          Length = 706

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/692 (49%), Positives = 478/692 (69%), Gaps = 5/692 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+E E LISR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ LSED +L A++FGH++ + VIE I  L     K      + D + +L   + 
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWSWQAPDVNVELHNRVQ 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K  +V+   +E  + +E E+  +   I+  VVR+
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDTIKADVVAALLAEDETLDENELRDILGSIEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            G  V VK+L+ D +G+++LS+K   + T +P
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK---EATAQP 696


>gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
 gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
          Length = 711

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/708 (49%), Positives = 492/708 (69%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFKWGQHTVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP R    + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI +L +   K     D +  +K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAAK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291
            E     + ++ + DL  +  I +K  R  ++ ++      K      ++   + ++  +
Sbjct: 241 NEALIARVGELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTVAADKASV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 RFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS++   +  A+  I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +  D   G+P
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAPQGEP 708


>gi|332532415|ref|ZP_08408293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038058|gb|EGI74505.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 708

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/688 (50%), Positives = 475/688 (69%), Gaps = 9/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQER 
Sbjct: 7   EFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E  P 
Sbjct: 67  YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+  SAAL +SG+PF GP+  ++V YING+YVLNP L E ++  LDL V+GT  AVL
Sbjct: 127 MVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243
           MVE EAN L+EDV+L A+++GH + + +I AI +  K  A +P        K+ + LE++
Sbjct: 187 MVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEF-KAQAGKPTWDWTAPEKNVA-LEDK 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300
           ++ +  E +  +  I +K  R + + + K ++V+  ++E +   S ++ EI  +F  ++ 
Sbjct: 245 VATIAAEKVGAAYLITDKVARKEALGEAKDEVVAVLTAELAEGESLDKQEIGKIFGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D 
Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P   +FP
Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTLTEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +S
Sbjct: 485 GDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAIS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
               +L  F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++  
Sbjct: 545 APSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV   
Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D + EG  V VK+L+ D +G+++LS+K
Sbjct: 665 ADHLSEGQEVKVKVLEVDRQGRVRLSIK 692


>gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis
           HI4320]
 gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
           29906]
 gi|226702677|sp|B4F2C3|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis
           HI4320]
 gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 709

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/690 (50%), Positives = 485/690 (70%), Gaps = 2/690 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+     T V  TVV  + +K+GQDFFPLT
Sbjct: 1   MLNPTVRKFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE QV+  V+  
Sbjct: 61  VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+ GA+V +I+GQYVLNP +DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     KE      +  ++
Sbjct: 181 GTAGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKWDWAPEPINQ 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + ++Q+ +  +  +  I EK  R +QID ++ +++S   +E  S +EGEI+ +F  +
Sbjct: 241 SLHDRIAQLAQTRIGDAYRITEKQERYEQIDAIRDEVISTLLAEDESLDEGEIIEIFSGL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+VR  +L  + R+DGR+ + VR +  + GLL RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKKIVRARVLAGEPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D + G   + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQTIDDIMGEHTDTFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI + VAGIAMGLVK+G++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+ +G++A+QMD+KI GI+  IM +AL QAK  RLHIL  M   
Sbjct: 481 ILGDEDHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHILGVMESA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S+ R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISQPRAEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 SGEQAKQAIARIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K SD +  G  V VK+L+ D +G+I+LSMK
Sbjct: 661 KVSDYLTMGQEVPVKVLEIDRQGRIRLSMK 690


>gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
           ATCC 19624]
 gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
           ATCC 19624]
          Length = 717

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/701 (48%), Positives = 484/701 (69%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQS GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKITKTFQWGQHTVTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+ +  
Sbjct: 63  VDYLEKSYAAGKIPGSFFKREGRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIPAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH++ K  I AI  L +   K     D K  +K
Sbjct: 183 GTETAVLMVESEALQLSEEIMLGAVVFGHDQGKIAINAIHDLVRDAGKP--AWDWKAPAK 240

Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E  +++++   +E LR +  I  K  R +   +    + +  + +   +++ ++  +  
Sbjct: 241 DEALIAKVVALGEEKLRAAYQIRNKQSRTQACREAYAAVKAGLAEQGVEFDDVKVEGLLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+A+ VR  +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 DIEARTVRGQILAGEPRIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L+LM+AGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLKAHVAGIAMGLIKEDNKFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E++ ++ +F PR+  M I P++IR+VIG GG  IR + E+TG +++I +DGT+ IA
Sbjct: 541 AAVGEAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTQIDIAEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+  A+ E A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ ER
Sbjct: 601 STESAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V K +D + EG  V VK+L+ D++G++KLSMK + +   +P
Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALLERPEQP 701


>gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
 gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
          Length = 716

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/708 (48%), Positives = 490/708 (69%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP R    + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K     D K  +K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWKPAAK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++     +    + ++      ++  +
Sbjct: 241 NEPLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +   L ++ PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +  D   G P
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAANGAP 708


>gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
           UMN179]
 gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
           UMN179]
          Length = 718

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/690 (49%), Positives = 480/690 (69%), Gaps = 13/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQER+
Sbjct: 7   QFKYGQHTVTLETGAMARQATAAVMASMDDTCVFVTVVAKKEVKEGQDFFPLTVNYQERS 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA+ L+E+ +L A++FGH + + VIEAI + A    K     +    +    ++++
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAAEAGKPRWDWQAPAKNEALINRIK 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298
           E     + E  R++    EK  R +QID +K  + +   +E+S   S  EG+I+ +  ++
Sbjct: 247 ELSEARLGEAYRIT----EKQARYEQIDVIKADVCATVLAENSEDESITEGKIIDIIHEL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +++VVR+ +L  + R+DGR  +TVR +    G+L RTHGS++F RG+TQ++ V TLGT  
Sbjct: 303 ESRVVRSRILAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 363 DAQIIDELTGERTDHFLFHYNFPPYSVGETGLIGSPKRREIGHGRLAKRGVAAVMPTLEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEITES+GSSSMA+VCG+SL+LMDAGVPI   VAGIAMGLVK+ D F++LSD
Sbjct: 423 FPYVVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAAVAGIAMGLVKEEDKFVVLSD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HILN M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILNVMEQA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++
Sbjct: 543 IQTPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                +A    I  I    EVNKIY+G+V +++DFGAFV   G ++GLVHISQ+S ERV 
Sbjct: 603 DNNAAKAVMSRIEDIVAEVEVNKIYQGKVTRIVDFGAFVVVLGNKEGLVHISQISDERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K SD ++ G  V VK+++ D +G+I+L+MK
Sbjct: 663 KVSDYLQVGQEVMVKVVEIDRQGRIRLTMK 692


>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans
           LB400]
 gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
           xenovorans LB400]
          Length = 716

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/708 (48%), Positives = 489/708 (69%), Gaps = 13/708 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  R+ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP R    + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K     D +  +K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWQPAAK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++     +    + ++      ++  +
Sbjct: 241 NEPLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM +AL QAK GRLHI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAKEGRLHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +   L ++ PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +  D   G P
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAANGAP 708


>gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
 gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
          Length = 706

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/692 (49%), Positives = 478/692 (69%), Gaps = 5/692 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+E E LISR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ LSED +L A++FGH++ + VIE I  L     K      + D + +L   + 
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPDVNVELHNRVQ 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K  +V+   +E  + +E E+  +   I+  VVR+
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDTIKADVVTALLAEDETLDENELRDILGSIEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+++++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENYVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            G  V VK+L+ D +G+I+LS+K   + T +P
Sbjct: 668 MGQEVPVKVLEVDRQGRIRLSIK---EATAQP 696


>gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase/polyadenylase [Haemophilus ducreyi
           35000HP]
 gi|81423299|sp|Q7VL91|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 712

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/692 (49%), Positives = 475/692 (68%), Gaps = 10/692 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  +VV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+ENE LI+R+IDR IRPLF + + NE Q++  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA+ LSE+ +L A++FGH + + VIE I +  K   K     +P   ++   ++++
Sbjct: 187 MVESEADILSEEQMLAAVVFGHQQQQIVIENIKEFVKEAGKPRWDWQPAEANTALINQVK 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I +  R++    EK  R +QID +K  +++  +++  + +EG I+ +   +++ 
Sbjct: 247 ALAETRIGDAYRIT----EKQARYEQIDAIKADVIAQLTAQDETISEGAIIDIITALESS 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L  + R+DGR  +TVR ++   G+L RTHGS++F RG+TQA+ V TLGT  D Q
Sbjct: 303 VVRGRILAGEPRIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKATVAGIAMGLVKEDEKFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL QAK  R+HILN M + L  
Sbjct: 483 DEDHLGDMDFKVAGTRKGITALQMDIKIEGITPEIMHIALNQAKGARMHILNVMEQALPA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++   
Sbjct: 543 PRADLSDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAATDNN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +     I  I    EVN IY G+V +V+DFGAFV   G ++GLVHISQ++  RV + S
Sbjct: 603 AAKMVMSRIEEIVAEVEVNAIYTGKVSRVVDFGAFVTILGGKEGLVHISQITDARVERVS 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D +  G  V VK+++ D + +I+L+MK +D N
Sbjct: 663 DYLSVGQEVNVKVVEIDRQNRIRLTMKDLDNN 694


>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
 gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
          Length = 724

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/702 (50%), Positives = 483/702 (68%), Gaps = 17/702 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      ++    ++ ETG IARQ+ GAV+    +TVVLATVV  + +K GQDFFPLT
Sbjct: 3   MFNKVVKSFKYGDHNVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE Q+II+V+  
Sbjct: 63  VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YIN +YVL P L + + S LDL V+
Sbjct: 123 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSE+V+L A++FG+ + + VIEAI +L +   K P+     D++ 
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEEAGK-PLW----DWAP 237

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYV-RCKQ---------IDDLKKKMVSYFS-SEHSSWNE 288
            E     +   +  V   I E Y  R KQ          DD+ +K+ +     E +   E
Sbjct: 238 AERNQQLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGE 297

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ ++  +++A  VR  +L  + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA
Sbjct: 298 NEVANILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQA 357

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +VV TLGT++DEQ VD L+G QR  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA
Sbjct: 358 LVVTTLGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 417

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  VLP    F YT+R+VSEI ES+GSSSMA+VCG  L+L+DAGVP+   VAG+AMGL+K
Sbjct: 418 LTAVLPNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIK 477

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G+ F +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GIS+ IM +AL QAK GR
Sbjct: 478 EGNKFAVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGR 537

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HIL +M + +   + +L  + PR+    I PD+IR+VIG GG VIR + E+TG ++NI+
Sbjct: 538 MHILGKMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIE 597

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDGTV IAS   A    AR  +  +    EV K+Y+G+V +++DFGA V     RDGL+H
Sbjct: 598 DDGTVTIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLH 657

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ISQ++ ERV + SD +KEG  V VK+L+ DD+ +I+LSMK +
Sbjct: 658 ISQIAHERVNQVSDYLKEGQIVRVKVLEIDDKDRIRLSMKAL 699


>gi|256821536|ref|YP_003145499.1| polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
           16069]
 gi|256795075|gb|ACV25731.1| Polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
           16069]
          Length = 706

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/700 (49%), Positives = 479/700 (68%), Gaps = 33/700 (4%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E+ GR + +ETGR+ARQ+ GAV+     T     V   + +++GQDFFPLTVNY E+TY
Sbjct: 8   FEYGGRTVTIETGRVARQATGAVVIDCDGTTAFVAVTGKKEVREGQDFFPLTVNYTEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+L+RE+RP++ E LI+R+IDR +RPLF   + NE QV+I ++  + +    V
Sbjct: 68  AAGKIPGGFLKREARPSDEETLIARLIDRPLRPLFPDGFMNEVQVVITIVSVNQDVPTEV 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+M+ ASAAL +SG+PF GPV  AQV Y++G+YVLNP + +  +  LDL V+GT+ AVLM
Sbjct: 128 VAMLGASAALEISGIPFSGPVGAAQVGYLDGEYVLNPSVTQLKESKLDLMVAGTESAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----------PI--VIDS 234
           VE EAN+L E+V+L A++FGH E +  I+AI +LA   AK            P+   + S
Sbjct: 188 VESEANELPENVMLGAVMFGHQESQVAIKAIKELAAEAAKPKWDWTAPEKNVPLYDAVKS 247

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVS 293
             F+ +E+               I +K  R  +I++L+   V   +  E    +  ++  
Sbjct: 248 HSFAAIEDAYQ------------IADKAERYTKINELQSVAVEALAGDEEGQPSADDVKD 295

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +F  I+ +VVRT ++  K R+DGRD + VR +  + G+  RTHGS++F RG+TQA+V  T
Sbjct: 296 MFHSIEKEVVRTRIISGKPRIDGRDPDMVRALDVRTGVFPRTHGSAIFTRGETQAMVFAT 355

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q  DS+ G  ++ FM+HYNF P   GE   MG+P RREIGHGRLA+R +  ++
Sbjct: 356 LGTERDAQIKDSIMGEAKDHFMLHYNFPPYCVGETGFMGSPKRREIGHGRLAKRGVAAMV 415

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P  A+FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+ D+F
Sbjct: 416 PGIAEFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEADNF 475

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++LSDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM  AL QAK GRLHIL+
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKIEGITQEIMEQALHQAKGGRLHILS 535

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M++ L + R  + E+ PR+ ++ IP D+I  VIG GG  IR + E+TGA + I+DDGTV
Sbjct: 536 VMNQALEKPRDDISEYAPRITVIKIPVDKISEVIGKGGSTIRALTEETGATIEINDDGTV 595

Query: 594 KIASSSLAEIEAAREMIRSIT--DVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           K+ASS   + E A E +R I    +P E    ++G+VV++ DFGAFV     RDGLVHIS
Sbjct: 596 KVASS---DAEGAAEAVRRIKLMTMPIEAGMEFEGKVVRLADFGAFVEITPGRDGLVHIS 652

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           Q++ ERV K +D +KEGD V VK+L+ D + +I+LSMK +
Sbjct: 653 QIAHERVNKVTDYLKEGDVVKVKVLEVDRQNRIRLSMKAM 692


>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 699

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/687 (48%), Positives = 474/687 (68%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VEIE+ G+PL +ETG++ARQ+DGA + TYGET +L TVV  +++++GQDFFPLTVNYQ
Sbjct: 4   QKVEIEFNGQPLTIETGKMARQADGATIVTYGETKILCTVVSAKTMREGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPG + RRE   TE E LI R+IDR +RPLF K Y  ETQ+I  V+  D  +
Sbjct: 64  EKFYASGKIPGSFFRRERGATERETLICRLIDRPMRPLFPKGYLYETQIIPTVISADCVN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P  +S++AASA++ +S +PF GP+ G +V  ++G+++ NP L++ +Q  +++ V+G++D
Sbjct: 124 DPDTLSILAASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDIEIVVAGSKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE EA+ +SED +L+A+ FGH   +P+IE  +KLA++    K   ++   D + LE
Sbjct: 184 AIMMVEGEADLISEDEMLEAVFFGHQAIQPLIEMQTKLAELVGVEKREFIVPETD-AALE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++  + +  +  +  I  K  R   + +++  +    + E    ++ EI ++   I+ +
Sbjct: 243 EKIVSLAQGRVEKAVTIRAKQERYAALKEIRADIQEQLAEEFEGRSD-EISAIMGSIEKR 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +   ++R+DGR    +R IS +VG+L R HGS+LF RG+TQA+V  TLGT  DEQ
Sbjct: 302 VVRQSVTKDQIRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D++ G +   FM+HYNF P   GE S    P RREIGHG LA R+   ++P+   FPY
Sbjct: 362 RMDNIQGMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSATKIMPEFDDFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVSEI ES+GSSSMA+VCG+S++LMDAGVP    VAGIAMGL+K+GDD  ILSDI G
Sbjct: 422 TVRIVSEILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAILSDILG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  G+ A+QMD+KI G++ +IM  AL QAK GRLHIL EM+K +S 
Sbjct: 482 DEDHLGDMDFKVTGTKEGVAALQMDIKIDGVTRDIMQRALAQAKEGRLHILGEMAKAISA 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  +  + PR+  + + PDQ+R VIG GGK +RGI+E TG  ++I+DDG + I+SS+  
Sbjct: 542 PREDMSPYAPRITTVFVKPDQVRTVIGSGGKTVRGIIEATGCGIDIEDDGRINISSSNGD 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +AA +MI+ +T  PEV K+Y G V K+MDFGAFV      DGLVH+S+L+ ERV K +
Sbjct: 602 AAKAAAQMIKELTQSPEVGKLYNGTVKKIMDFGAFVEIFSGTDGLVHVSELAKERVNKVT 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D++ EGD V VK +  D +GKIKLS K
Sbjct: 662 DILNEGDKVLVKCIGVDRQGKIKLSRK 688


>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
 gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
          Length = 715

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/699 (48%), Positives = 488/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E +W    ++LETG IARQ+ GAV+    +TV+LATVV  ++ K GQDFFPLT
Sbjct: 3   MFSKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP R    + +LDL V+
Sbjct: 123 NPDVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K     D +  +K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWQPAAK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEI 291
            E     ++++ + +L  +  I +K  R  ++ ++   + +    + ++      ++  +
Sbjct: 241 NEPLIARVTELAQAELLAAYQIRDKQARSSKLKEVYAAVSAKLEEDAAASGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|153835027|ref|ZP_01987694.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
 gi|148868504|gb|EDL67603.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
          Length = 710

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/694 (49%), Positives = 482/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E D   LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELDTSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++  A++       +   + 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 714

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 20  MFNIIRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 78

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 79  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 138

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 139 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 198

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    AKE   +      
Sbjct: 199 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAKESDWVAPAKNE 258

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 259 ALLEQLKTAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 318

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 319 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 378

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 379 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 438

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 439 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 498

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 499 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 558

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 559 VISRARAEISANAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 618

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 619 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 678

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  + V++ D D+RG+IKL+MK ++Q
Sbjct: 679 ANVTDVLKEGQELKVQVADVDNRGRIKLTMKDIEQ 713


>gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0010_16J05]
          Length = 718

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/690 (50%), Positives = 485/690 (70%), Gaps = 11/690 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T + ++  + + +ET +IA+Q+ G+V+ T G+TVVL TVV  +S + GQDFFPLTVNYQE
Sbjct: 22  TKQFQFGDQQVTIETNKIAKQATGSVVVTIGDTVVLTTVVGAKSARPGQDFFPLTVNYQE 81

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA GKIPGG+ RRE RP+E E L SR+IDR IRPLF K + NE Q++  V+  D    
Sbjct: 82  KTYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIVCTVVSTDKNQD 141

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +M+  SAAL +SG+PF+GP+  A+V Y++GQY+LNP  D  + S L++ V+GT  A
Sbjct: 142 PDIAAMIGTSAALAISGIPFDGPIGAARVGYVDGQYLLNPGYDVLETSELNMTVAGTASA 201

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSK 239
           VLMVE EA +LSED +L A++F H E + +I A+++LA    K     +P   D   F++
Sbjct: 202 VLMVESEAKELSEDQMLGAVLFAHQEMQAIITAVAELAGEIGKPRWDWQPEAKDESLFAQ 261

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
           +E      +K DL  +  I +K  R +++ +L+   V+  + +E++S +  ++  VF  +
Sbjct: 262 VE----GAVKSDLGDAYRISDKMERQERVRELRDSAVAQLTGAENASHSADDVAGVFSKV 317

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  +L+ + R+DGRD  TVR I  +VG+L + HGS+LF RG+TQA+VV TLGT  
Sbjct: 318 EKDLVRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLR 377

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D   +D+L G+ ++ FM+HYNF P + GE   M  P RREIGHG+LARR +   LP +  
Sbjct: 378 DAALIDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSATLPNSED 437

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAG+AMGLVK+G+ + +L+D
Sbjct: 438 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPVKAPVAGVAMGLVKEGNRYAVLTD 497

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM  AL QA   R+HIL EM+KV
Sbjct: 498 ILGDEDHLGDMDFKVAGTATGVTALQMDIKIDGITEEIMEAALAQAFEARVHILGEMNKV 557

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR +L    P +  + + PD+IR++IG GG  IR IVE+TGA+V+I+DDG+V+I + 
Sbjct: 558 ISASREELSANAPAMVTLNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRIYAE 617

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A  +AA   I+ IT   EV +IYKG+V +++DFGAFV+    +DGL+HISQ++ ERV 
Sbjct: 618 DGAAKDAAVNRIQEITAEAEVGRIYKGKVERIVDFGAFVNILPGKDGLLHISQIAEERVE 677

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             +D + EG  V V +LD D RG+IKLS+K
Sbjct: 678 NVTDYLSEGQEVEVVVLDVDQRGRIKLSIK 707


>gi|262274879|ref|ZP_06052690.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
           101886]
 gi|262221442|gb|EEY72756.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
           101886]
          Length = 709

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/682 (49%), Positives = 477/682 (69%), Gaps = 2/682 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  +VV  +   +GQDFFPLTVNYQERTY
Sbjct: 8   FQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKDAVEGQDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +   +P +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDHFKNEVQVIATVVSVNPNVNPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+M+  SAAL +SG+PF GP+  A+V YIN + VLNP   E ++  LDL V+GT +AVLM
Sbjct: 128 VAMIGTSAALSISGIPFNGPIGAARVGYINDELVLNPSNKELEESRLDLVVAGTDNAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE EA++LSE+ +L A++FGH++ + VI AI + A   A       + +  ++L+  +++
Sbjct: 188 VESEADRLSEEQMLQAVVFGHDQQQVVINAIKEFAAEVATPAWEWSAPEVNTELKARVAE 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + +  L  +  I EK  R  ++ ++K  +V     +  S +  EI  +   ++ +VVR+ 
Sbjct: 248 LAEAQLTEAYQITEKMARYTRVGEIKSAVVEQLLEQDESLDAREIQGMLSSLEKQVVRSR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+ D Q +D +
Sbjct: 308 IIAGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDEI 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G + ++F+ HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +FPYT+R+V
Sbjct: 368 TGERTDNFLFHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSQEEFPYTVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCGSSLALMDAGVPI K VAGIAMGLVK+GDDF++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGSSLALMDAGVPIKKSVAGIAMGLVKEGDDFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGTD G+TA+QMD+KI GI++ IM +AL QAK  RLHILN M + +S +R  +
Sbjct: 488 GDMDFKVAGTDDGVTALQMDIKIEGITKEIMQIALNQAKGARLHILNVMDQAISSARDDI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            EF PR+  + I P++I++VIG GG VIR + E+T   + I+DDGTVKIA++   + +AA
Sbjct: 548 SEFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETDTTIEIEDDGTVKIAATDGEKAKAA 607

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
              I ++T   EV +IY G+V +++DFG FV   G ++GLVHISQ++ +R+ K SD V+ 
Sbjct: 608 IARIEALTAEVEVGRIYTGKVTRIVDFGCFVSVIGTKEGLVHISQVADKRIEKVSDYVEM 667

Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688
           G  V VK+L+ D +G+I+LSMK
Sbjct: 668 GQEVQVKVLEIDRQGRIRLSMK 689


>gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 708

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/694 (49%), Positives = 484/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT  AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++  A++       +  ++ 
Sbjct: 181 AGTDSAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E+   N  EI ++F D
Sbjct: 241 TALVTKIAELAETKLVEAYQITEKMARYDRIHEIAGEVNEALLAENPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  ++P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAIMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+ +M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHMMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLSEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
 gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
          Length = 722

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/701 (48%), Positives = 488/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 11  MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 70

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 71  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 130

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 131 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKASRLDLVVA 190

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 191 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 250

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289
              +++ E    + + +L  +  I +K  R  ++ ++     +    E       + ++ 
Sbjct: 251 ALIARVTE----LAQPELLAAYQIRDKQARSTKLKEVYTATSAKLEEEALAAGTVAADKA 306

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 307 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 366

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 367 VVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 426

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 427 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 486

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 487 GNKFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 546

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M++ +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 547 HILRKMTEAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 606

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 607 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 666

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 667 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 707


>gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
 gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
          Length = 697

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/695 (50%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    A E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPSKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY]
 gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding
           [Acidovorax ebreus TPSY]
          Length = 727

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/707 (47%), Positives = 486/707 (68%), Gaps = 14/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP     + S LDL V+
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA QLSE+++L A++FGH + K  I AI +L +   K     +P   D 
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              +K+    + + ++ LR +  I  K  R + + +    ++     E   ++  ++ ++
Sbjct: 243 TFIAKV----TALAEDKLRAAYQIRSKQARTQALREASASVLESLKGEGVEFDAVKVEAL 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             DI+AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TL
Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP
Sbjct: 359 GTERDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F 
Sbjct: 419 SKDEFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +
Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + E++ ++  F P++  M I P++IR+VIG GG  IR + ++TG ++NI++DGT+ 
Sbjct: 539 MQEAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTIT 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA++  A+ + A+  I  IT   EV K+Y+G V K++DFGA ++    +DGL+HISQ++ 
Sbjct: 599 IAATEAAKADEAKRRIEEITAEVEVGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
           ERV K  D ++EG  V VK+L+ DD+G++KLSMK +      ++G+P
Sbjct: 659 ERVEKVGDYLQEGQVVKVKVLETDDKGRVKLSMKALADRPAGDSGRP 705


>gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira
           halophila SL1]
 gi|187610274|sp|A1WXU7|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila
           SL1]
          Length = 702

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/684 (50%), Positives = 477/684 (69%), Gaps = 11/684 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG +ARQ+DGAVL    +TVVL TVV  +     +DF PLTVNYQERTYA G+IPG
Sbjct: 22  VTLETGGVARQADGAVLVDMADTVVLVTVVGRKDPAAARDFLPLTVNYQERTYAAGRIPG 81

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+ +RE RP+E E L  R+IDR IRPLF + ++ E QVI  V+  + E    + +M+  S
Sbjct: 82  GFFKREGRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLNDEVDADIPAMIGTS 141

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQ 194
           AAL LSG+PFEGP+   +V +++G++VLNP   +  +  LDL V+GTQDAVLMVE EAN 
Sbjct: 142 AALALSGIPFEGPIGACRVGHLDGEFVLNPTFSQTAESDLDLVVAGTQDAVLMVESEANL 201

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249
           L E  +LDA+++GH + +  I+ I+ LA    K     +P    +K+ S L+  ++++++
Sbjct: 202 LPESTMLDAVLYGHEQMQVAIDTINDLAAEAGKPRWDWQP---PAKNES-LDSAVAELVR 257

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAKVVRTVML 308
            DL  +  I +K  R +++  L+ K V   +  E   W  G++   F+ ++ K+VR  +L
Sbjct: 258 SDLEAAYQIADKQERSERVGALRDKAVEALADEEREGWGAGDVGEAFKTLEKKIVRGRIL 317

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
               R+DGRD++TVR ++ Q G+L RTHGS++F RG+TQAIVV TLGT  D Q +D+L G
Sbjct: 318 AGHPRIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVSTLGTGRDAQVIDALEG 377

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +R  FM+HYNF P   GE   +G P RREIGHG+LA+R +  V+P   +FPY +R+VSE
Sbjct: 378 ERREPFMLHYNFPPYCVGETGFIGTPKRREIGHGKLAKRGVEAVMPSDEEFPYVIRVVSE 437

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           +TES+GSSSMATVCG+SL+LMDAGVP+   VAGIAMGL+K+GD+F +L+DI GDEDHLG 
Sbjct: 438 VTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGDEFAVLTDILGDEDHLGD 497

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKVAG+  G+TA+QMD+KI GI+  IM  AL QA+ GRLHIL +M++V+ + R Q+ E
Sbjct: 498 MDFKVAGSKDGVTALQMDIKIDGITREIMEQALDQARSGRLHILEQMNQVIDKPREQMSE 557

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           + PR+  M I P++IR+VIG GG  IRG+ E+TG  ++I D+G V IAS+  A  E A++
Sbjct: 558 YAPRLLTMRIDPERIRDVIGKGGATIRGLTEETGTNIDISDEGVVTIASADKAAAEEAKK 617

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            I  +T   EV K+Y G+V K+MDFGAFV+    RDGLVHISQ+S  RV   +D + EGD
Sbjct: 618 RIELLTADVEVGKVYDGKVAKLMDFGAFVNILPGRDGLVHISQISNNRVENVADELSEGD 677

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQ 692
           +V VK+L+ D +G+I+LSMK V++
Sbjct: 678 SVRVKVLEVDRQGRIRLSMKAVEE 701


>gi|156975660|ref|YP_001446567.1| polynucleotide phosphorylase/polyadenylase [Vibrio harveyi ATCC
           BAA-1116]
 gi|187611334|sp|A7MZI2|PNP_VIBHB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|156527254|gb|ABU72340.1| hypothetical protein VIBHAR_03393 [Vibrio harveyi ATCC BAA-1116]
          Length = 710

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/694 (49%), Positives = 483/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++  A++       +   + 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638]
 gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638]
          Length = 711

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/693 (49%), Positives = 474/693 (68%), Gaps = 10/693 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VIE I  L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIENIKDLVKEAGKPRWDWQPEAVNEA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  QID +K + ++   +E  S +  E+  +   I+  
Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQIDVIKSETIATLVAEDESLDANELSEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 AVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPY
Sbjct: 364 NIDELMGDRTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
 gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
          Length = 775

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/696 (48%), Positives = 481/696 (69%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG +ARQ++GAVL     TV+LATVV  +S K GQDFFPLT
Sbjct: 3   LFNKVTKSFQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +M+  SAAL +SG+PF GP+  A+V YINGQYVLNP +       +DL V+
Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EA QLSE+++L  ++FGH +    I AI  L +   K   V D +  ++
Sbjct: 183 GTQAAVLMVESEAQQLSEEIMLGGVVFGHEQAGIAINAIHDLVRDAGKP--VWDWQAPAE 240

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E  +++   + +E LR    I  K  R + + +    +++        ++ G++  +  
Sbjct: 241 DEAFVAKVKGLAEEKLRAVYQIRSKQARTQALREANATVMASLKESGEPFDAGKVNDLLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I++K+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 SIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E++ ++  F PR+  + I P++IR+VIG GG VIRG+ E+TG  +NID+DGT+ IA
Sbjct: 541 EAMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+   + E A++ I  IT   E+ K+Y+G V K++DFGA ++    +DGL+HISQ++ ER
Sbjct: 601 STDPEKAELAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V K +D + EG  V VK+L+ D++G++KLSMK + +
Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTE 696


>gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 704

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/688 (50%), Positives = 474/688 (68%), Gaps = 12/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  K+GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 68  YAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE Q S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKL 240
           MVE EA  LSED +L A++FGH + + VIE I  LA    K       P V ++     L
Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIENIKALAAEAGKPRWEWTAPAVNEA-----L 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  +  +  I EK  R  QID +K  +++   +E  S N GEI  V   ++ 
Sbjct: 243 HARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAALQAEDESLNAGEIADVLGSLEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+G Q + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P+  +FP
Sbjct: 363 QNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQDEFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI 
Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIN 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I P++I++VIG GG VIR + ++TG  + I+DDGTVKIA++  
Sbjct: 543 APRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAATDN 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 603 EKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 663 TDYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
           20546]
 gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
           20546]
          Length = 710

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/694 (49%), Positives = 481/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQTVISAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I  +  ++     +E    N  EI ++F D
Sbjct: 241 TALTTKIAELAEAKLVEAYQITEKMARYDRIHTIAAEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   E  AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii
           Ech703]
 gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703]
          Length = 722

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/686 (50%), Positives = 476/686 (69%), Gaps = 8/686 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  + +K GQDFFPLTVNYQERT
Sbjct: 24  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHVKPGQDFFPLTVNYQERT 83

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+E E LISR+IDR IRPLF   + NE QVI  V+  + + SP 
Sbjct: 84  YAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFFNEVQVIATVVSVNPQISPD 143

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GT+ AVL
Sbjct: 144 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTEGAVL 203

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ L+ED +L A++FGH + + VIE I  L     K        + + +L+  + 
Sbjct: 204 MVESEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAEAGKSKWDWQPPEVNVELQNRVK 263

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K  +V+   +E  + ++ EI  +   I+  VVR+
Sbjct: 264 VLSEARLGDAYRITEKQERYAQVDAIKSDVVTGLLAEDDTLDDNEIRDILGSIEKNVVRS 323

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 324 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 383

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPYT+R+
Sbjct: 384 LMGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 443

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD +++LSDI GDEDH
Sbjct: 444 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDSYVVLSDILGDEDH 503

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R +
Sbjct: 504 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGE 563

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIASS   + + 
Sbjct: 564 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASS---DGDK 620

Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ARE IR I ++    EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +R+ K +D
Sbjct: 621 AREAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRIEKVAD 680

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ++ G  V VK+L+ D +G+++LS+K
Sbjct: 681 YLQLGQEVPVKVLEVDRQGRVRLSIK 706


>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
 gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
          Length = 747

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/694 (48%), Positives = 482/694 (69%), Gaps = 6/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   IFNKITKSFQWGDKTVIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH +    I AI +L +   K   V D K  +K
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGNVAINAIHELVREAGKP--VWDWKAPAK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E    +++ + ++ LR +  I  K  R     +    +++        ++  ++  +  
Sbjct: 241 DESLIAKVTALAEDKLRAAYQIRNKQARTHACREAYAVVMADLKEAGVEFDSVKVEGMLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+A++VR+ +L  + R+DGRD+ TVR I  +  +L R HGSSLF RG+TQA+VV TLGT
Sbjct: 301 DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + FM+HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALAGEYEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARIHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E++ ++  F P++  M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA
Sbjct: 541 DAMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++  A+ + A+  I  IT   E+ K+Y+G V K++DFGA ++    +DGL+HISQ++ ER
Sbjct: 601 ATDAAKADEAKRRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K SD + EG  V VK+++ D++G++KLSMK +
Sbjct: 661 VEKVSDYLTEGQIVKVKVMETDEKGRVKLSMKAL 694


>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 742

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/683 (49%), Positives = 474/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V   VV  + +K+GQDFFPLTVNYQERT
Sbjct: 40  QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLTVNYQERT 99

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 100 YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 159

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP ++E  Q  LDL V+GT  AVL
Sbjct: 160 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTDKAVL 219

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A+++GH + + VIEAI +L     K     +  +  + L  ++ 
Sbjct: 220 MVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTDLINKVK 279

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +V+  ++E    +EG+I+ +F  +++++VR 
Sbjct: 280 ALAEARLGDAYRITEKQARYEQIDAIKADVVAQITAEDEEVSEGKIIDIFTALESQIVRG 339

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 340 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 399

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 400 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRV 459

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI GDEDH
Sbjct: 460 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSDILGDEDH 519

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 520 LGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 579

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+     ++ 
Sbjct: 580 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDKNAVQD 639

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  IT   E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 640 VMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLQ 699

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 700 VGQEVMVKVVEIDRQGRIRLTMK 722


>gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax borkumensis
           SK2]
 gi|123050749|sp|Q0VSR7|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis
           SK2]
          Length = 697

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/697 (49%), Positives = 470/697 (67%), Gaps = 14/697 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T +I++    + LETG+IARQ+  AV+   G+T VL TVV  +    GQ+FFPLT
Sbjct: 1   MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANPGQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGG+L+RE RP+E E L  R+IDR IRPLF K + NE QV+  VM  
Sbjct: 61  VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P + +++  SAAL +SG+PF GP+  A+V Y +G Y+LNP   E  + +LDL V+
Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFSGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +LSED +L A++FGH E +P+I+ I + A     E     + D+  
Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTE-----TWDWKP 235

Query: 240 LE--EEMSQMIKEDLRVSC----FIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIV 292
            E  E +   IK+    +      I EK  R  ++ +L+   V+ F++ E  +    E+ 
Sbjct: 236 AEQNETLKAAIKDKFAAALGEAYTITEKMARYAKVGELRDACVAEFATGEDGAPEADEVK 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +F  I+  VVR  ++  K R+DGR  + VR I  QVG L +THGS+LF RG+TQAIV  
Sbjct: 296 DLFGKIEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTA 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   D Q++D+L G+ ++ FM+ YNF P   GE   +G+P RREIGHGRLARR +  V
Sbjct: 356 TLGGMRDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAV 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P    FPYT+R+VSEITES+GSSSMA+VCG+S+ALMDAGVP++ PVAGIAMGLVK+ D 
Sbjct: 416 VPSVQDFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDG 475

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA  GRLHI
Sbjct: 476 RYAVLSDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K ++ESR ++ +  P +  + I PD+IR+VIG GG  IR + E+TG  ++I+DDG
Sbjct: 536 LGEMNKAIAESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDDG 595

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +VKI   +  + + A   +  IT   EV  IY+G+V +V+DFGAFV      +GL+HISQ
Sbjct: 596 SVKIYGETREKADEAVRRVEEITAEAEVGAIYEGKVTRVVDFGAFVAIMPGTEGLLHISQ 655

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ ERV K +D V EG+ + VK+LD D RG+IKLSMK
Sbjct: 656 IAEERVEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMK 692


>gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
 gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
          Length = 696

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/690 (49%), Positives = 478/690 (69%), Gaps = 9/690 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VHTV+ E  G+ + +ETG+IA+Q+ GAV+   G+T+VL T V  +S K+GQ FFPLTVNY
Sbjct: 2   VHTVQTECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE RP++NE L  R+IDR IRPLF + + N+TQV+  V+  D +
Sbjct: 62  QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQ 182
             P +++M+ ASAALM+S +PF GP+ G +V  ++G ++ NP  + E+Q  +++ ++ ++
Sbjct: 122 HDPGILAMIGASAALMVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSDMEIVIAASK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPIVIDSKDFS 238
           DA+LMVE  A+++SE+ +L+AI FG    + ++ A    ++K+A +    P  + + D  
Sbjct: 182 DAILMVEGSASEVSENDLLEAIFFGKQAVQGILAAQEELVAKVAPVKRNIPAPVVNTD-- 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  +  + KE++R +  I  K  R   ID +  K V+  + E    +E ++ +  E++
Sbjct: 240 -LKARVDALAKEEMRGAVRIKTKVERHDAIDAITVKTVAALAEEFEG-SEKDVKAFIEEL 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  ++    R+DGRD++T+R+I+ +VGLL R HGS+LF RG+TQ+IV  TLGT  
Sbjct: 298 EYDLVREHIIKDGERIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSV 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +DSL G  R  F++HYNF P + GE S   AP RREIGHG LA RA+  VLP+   
Sbjct: 358 DEQRIDSLYGDSRKKFLLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDD 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVS+ITES+GSSSMATVCG SL++MDAG+PI  PVAGIAMGL+K+GDDF ILSD
Sbjct: 418 FPYTIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSD 477

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM  AL QAK GR+HIL EM+K 
Sbjct: 478 ILGDEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRVHILGEMAKT 537

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++ SR  L  F PR+  + +  D+IR+VIG GGK IR + E TG  ++IDD G + IAS+
Sbjct: 538 IATSRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVAIDIDDTGKINIAST 597

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    + A +MIR++T   E  K+Y G V K+M+FGAFV      DGLVH+S+L TERV 
Sbjct: 598 NKEACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVK 657

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             SD++KEGD V VK +  D +GKIKLS K
Sbjct: 658 NVSDILKEGDKVLVKCIGIDKQGKIKLSRK 687


>gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
 gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
          Length = 715

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/682 (50%), Positives = 475/682 (69%), Gaps = 4/682 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           ++    + LETG +ARQ+  AV+ +  +T V  TVV  +    G+DFFPLTVNYQERTYA
Sbjct: 9   QYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPGG+ RRE RP+E E LISR+IDR IRPLF + + NE QV+  VM  +   SP +V
Sbjct: 69  AGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ ASAAL +SG+PF GP+  A+V Y+NGQYVLNP   E  Q  LDL V+GT +AVLMV
Sbjct: 129 AMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247
           E EA  LSE+V+L A+++GH + + VI AI++ A     +P        ++ L+ +++++
Sbjct: 189 ESEAAILSEEVMLGAVVYGHEQMQTVINAINEFAAAVGTKPWDWTPPAVNEALKAKVAEL 248

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
              +L  +  I EK VR + I  +K ++V    +     +  +I   F  +++++VR  +
Sbjct: 249 ASAELGEAYRITEKAVRYETIAAIKGRVVEQVIASGVEEDAKKIGEEFHSLESRIVRGRV 308

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +  + R+DGRD E +R +S   G+L R HGS+LF RG+TQAIVV TLGT  D Q +D L+
Sbjct: 309 VRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELT 368

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G + + FM+HYNF P   GE   MG+P RREIGHGRLA+R +  V+P  A+FPY +R+VS
Sbjct: 369 GNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVS 428

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDHLG
Sbjct: 429 EITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLG 488

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA+  RLHIL  M + +   R Q+ 
Sbjct: 489 DMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAQIS 548

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI-ASSSLAEIEAA 606
           +F PR+  + I P++I++VIG GG VIR + E+TG  + +DDDGTV+I A ++ A +EA 
Sbjct: 549 DFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEAI 608

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R  I +IT   EVN+IY+G+VV++ DFGAFV+    +DGLVHISQ++  RV   +D +  
Sbjct: 609 RR-IEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADHLTI 667

Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688
           GD V VK+L+ D +G+++LS+K
Sbjct: 668 GDVVKVKVLEVDRQGRVRLSIK 689


>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
           ferrireducens T118]
 gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
          Length = 706

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/700 (49%), Positives = 481/700 (68%), Gaps = 6/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG IARQ+ GAVL     TVVLATVV     K GQDFFPLT
Sbjct: 3   IFNKVTKTFQWGQNTVTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE  V+++ +  
Sbjct: 63  VDYLEKTYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAALIAVSAALSVSGIPFSGPIGAARVGYINGEYVLNPGQTARKDSVMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH +    I AI +L +   K   V D K  +K
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKP--VWDWKAPAK 240

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E  +++   +    L  +  I  K  R +   +    +++    +  +++   +  +  
Sbjct: 241 DEPLIAKVGALAAHKLEAAYQIRNKQARTRACREAYAVVMADLKLDGVAFDSVAVEGMLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 DIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+LSG   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALMAVLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++E++ ++  F PR+  M I PD+IR+VIG GG VIR + E+TG ++NID+DGT+ IA
Sbjct: 541 EAMAEAKTEVSTFAPRLFTMKINPDKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+  A+ E A+  I+ IT   E+ KIY+G + K++DFGA V+    +DGL+HISQ++ ER
Sbjct: 601 SADPAKAEEAKRRIQQITAEVEIGKIYEGPITKILDFGALVNLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V K +D + EG  V VK+++ D++G+IKLSMKV+    G+
Sbjct: 661 VEKVTDYLSEGQIVKVKVMETDEKGRIKLSMKVLLDRPGQ 700


>gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase/polyadenylase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|187470961|sp|A0KND9|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 712

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/685 (49%), Positives = 477/685 (69%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  TVV  +    G+DFFPLTVNYQERTY
Sbjct: 8   FQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+ RRE RP+E E LISR+IDR IRPLF + + NE QV+  VM  +   SP +
Sbjct: 68  AAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+M+ ASAAL +SG+PF GP+  A+V Y+NGQYVLNP   E  Q  LDL V+GT +AVLM
Sbjct: 128 VAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EA  LSE+V+L A++FGH + + VI AI++ A     +P    +   ++ L+ ++++
Sbjct: 188 VESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEALKAKVAE 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           +   +L  +  I EK VR + I  +K ++V    +     +  +I   F  +++++VR  
Sbjct: 248 LATAELGEAYRITEKAVRYETIGAIKARVVEQVIASGVEEDAKKIGEEFHSLESRIVRGR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++  + R+DGRD E +R +S   G+L R HGS+LF RG+TQA+VV TLGT  D Q +D L
Sbjct: 308 VVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERDAQNIDEL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G + + FM+HYNF P   GE   MG+P RREIGHGRLA+R +  V+P   +FPY +R+V
Sbjct: 368 TGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEFPYVVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA+  RLHIL  M + +   R ++
Sbjct: 488 GDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            +F PR+  + I P++I++VIG GG VIR + E+TG  + +DDDGTV+IA+    + +AA
Sbjct: 548 SDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRIAA---VDGDAA 604

Query: 607 REMIR---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +E IR   +IT   EVN+IY+G+VV++ DFGAFV+    +DGLVHISQ++  RV   +D 
Sbjct: 605 KEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           +K GD V VK+L+ D +G+++LS+K
Sbjct: 665 LKIGDVVKVKVLEVDRQGRVRLSIK 689


>gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida
           LFI1238]
 gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 718

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/699 (48%), Positives = 492/699 (70%), Gaps = 19/699 (2%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+A+  +T V  +VV  +    GQDFFPL
Sbjct: 10  MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPL 69

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 70  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 129

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL ++G+PF GP+  A+V +ING+ VLNP   E   S LDL V
Sbjct: 130 INPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVV 189

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVI 232
           SGT+ AVLMVE EA+ LSE+ +L A++FGH++ + VI+AI++ A   A      + P+V 
Sbjct: 190 SGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVV- 248

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
                ++L+ +++++ +  L  +  I EK  R +Q+  +K ++V+    ++ + +E EI 
Sbjct: 249 ----NAELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALLVQNEALDEREIR 304

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +   ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  
Sbjct: 305 GMLGALEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTA 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ D Q +DSL G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V
Sbjct: 365 TLGTQRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDD
Sbjct: 425 MPSVEEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDD 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++LSDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL
Sbjct: 485 FVVLSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M + +S +R  + ++ PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT
Sbjct: 545 TVMDEAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGT 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +KIA++  A   AA+E IR I ++    EV KIY G+V++++DFGAFV   G ++GLVHI
Sbjct: 605 IKIAATEGA---AAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHI 661

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SQ++ ER+ K +D ++ G  V  K+L+ D +G+I+LS+K
Sbjct: 662 SQIAEERIEKVADHLQVGQEVQTKVLEIDRQGRIRLSIK 700


>gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42]
 gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42]
          Length = 727

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/707 (48%), Positives = 485/707 (68%), Gaps = 14/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP     + S LDL V+
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA QLSE+++L A++FGH + K  I AI +L +   K     +P   D 
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              +K+    + + +  LR +  I  K  R + + +    ++     E   ++  ++ ++
Sbjct: 243 TFIAKV----TALAEGKLRAAYQIRSKQARTQALREASASVLESLKGEGVEFDAVKVEAL 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             DI+AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TL
Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP
Sbjct: 359 GTERDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F 
Sbjct: 419 SKDEFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +
Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + E++ ++  F P++  M I P++IR+VIG GG  IR + ++TG ++NI++DGT+ 
Sbjct: 539 MQEAMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTIT 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA++  A+ + A+  I  IT   EV KIY+G V K++DFGA ++    +DGL+HISQ++ 
Sbjct: 599 IAATEAAKADEAKRRIEEITAEVEVGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
           ERV K  D ++EG  V VK+L+ DD+G++KLSMK +      ++G+P
Sbjct: 659 ERVEKVGDYLQEGQIVKVKVLETDDKGRVKLSMKALADRPAGDSGRP 705


>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 714

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/699 (49%), Positives = 485/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAPK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291
            E     ++++   DL  +  + +K  R  ++ ++     +    E       + ++  +
Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
           21326]
 gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
           21326]
          Length = 706

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/694 (49%), Positives = 483/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++  A++       +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   E  AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 714

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/699 (49%), Positives = 486/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAPK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291
            E     ++++   DL  +  + +K  R  ++ ++      K      ++   + ++  +
Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEADALAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           GB-1]
 gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1]
          Length = 701

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/681 (49%), Positives = 477/681 (70%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTADAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA   AK     +P V +++ F+ +  E  + 
Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWKPAVANTELFNAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +   ++     K  R  ++ +L+ + ++ FS E    +  E+  +F +I+ + VR  +
Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAA+
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
           102891]
 gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
           102891]
          Length = 710

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/694 (49%), Positives = 479/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A   A      +   + 
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVISAINEFAAEVATPAWDWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I  +  ++     +E    N  EI ++F D
Sbjct: 241 TALVAKIAELAETKLVEAYQITEKMARYDRIHTIAAEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   E  AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 T---EGTAAQEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|254229311|ref|ZP_04922728.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
 gi|262393386|ref|YP_003285240.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
 gi|151938119|gb|EDN56960.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
 gi|262336980|gb|ACY50775.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
          Length = 711

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/694 (49%), Positives = 486/694 (70%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ +  I+AI++  A++       +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIKAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+++++++ +  L  +  I EK  R  +I+++  ++     +E    +  EI ++F D
Sbjct: 241 TALKDKIAELAEAKLVEAYKITEKMARYDRINEIAAEVNEVLLAEDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   E  AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 711

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/691 (49%), Positives = 484/691 (70%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            +    P +V+M+  SAAL +SG+PF GP+  A+V +INGQ VLNP   E DQ  LDL V
Sbjct: 121 VNPNVQPDIVTMIGTSAALAISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 AGTEGAVLMVESEADILSEEEMLAAVVYGHDQQQVVINAINEFAAEVATPSWDWVAPQEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+E+++Q+ +  L  +  I EK  R +++  +K  +++   +E  S +  +I  +   
Sbjct: 241 TALKEKIAQLAEVRLTEAYQIIEKMARYEKVAAIKADVIAAILAEDDSQDVMKIKKLLGA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR  ++  + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKQVVRGRIIAGEKRIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDYFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ ++F++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEDENFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRMLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I  IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ +R+
Sbjct: 601 TDGDQAQEAIRRILQITAEVEVGKIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SDV+ EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDVLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 713

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/683 (49%), Positives = 478/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  ++GQDFFPLTVNYQER 
Sbjct: 14  KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 73

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 74  YAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GT +AVL
Sbjct: 134 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTDNAVL 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE EA+ LSED +L A++FGH++ + VIE I  LA    K      + +  + L++ +S
Sbjct: 194 MVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNTALQQRVS 253

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           +M +  L  +  I EK  R  ++D++K+ +++   +E +S + GEI  +   ++  VVR 
Sbjct: 254 EMAEARLGEAYHITEKQARYAKVDEIKESVIADLLAEDASLDAGEISDILGALEKSVVRG 313

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 314 RVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 373

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P   +FPYT+R+
Sbjct: 374 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQEEFPYTVRV 433

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+ D+F++LSDI GDEDH
Sbjct: 434 VSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 493

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + ++  R  
Sbjct: 494 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINAPRGD 553

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 554 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKH 613

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 614 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 673

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 674 MGQEVAVKVLEVDRQGRVRLSIK 696


>gi|257096736|sp|B6ENE6|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 709

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/699 (48%), Positives = 492/699 (70%), Gaps = 19/699 (2%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+A+  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL ++G+PF GP+  A+V +ING+ VLNP   E   S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVI 232
           SGT+ AVLMVE EA+ LSE+ +L A++FGH++ + VI+AI++ A   A      + P+V 
Sbjct: 181 SGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVV- 239

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
                ++L+ +++++ +  L  +  I EK  R +Q+  +K ++V+    ++ + +E EI 
Sbjct: 240 ----NAELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALLVQNEALDEREIR 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +   ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  
Sbjct: 296 GMLGALEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTA 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ D Q +DSL G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V
Sbjct: 356 TLGTQRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAV 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDD
Sbjct: 416 MPSVEEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDD 475

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++LSDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL
Sbjct: 476 FVVLSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHIL 535

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M + +S +R  + ++ PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT
Sbjct: 536 TVMDEAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGT 595

Query: 593 VKIASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +KIA++  A   AA+E IR I ++    EV KIY G+V++++DFGAFV   G ++GLVHI
Sbjct: 596 IKIAATEGA---AAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHI 652

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SQ++ ER+ K +D ++ G  V  K+L+ D +G+I+LS+K
Sbjct: 653 SQIAEERIEKVADHLQVGQEVQTKVLEIDRQGRIRLSIK 691


>gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           A1501]
 gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
           A1501]
          Length = 701

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/681 (50%), Positives = 480/681 (70%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  ++    + FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI  V+    ++ P + +M+  
Sbjct: 75  GGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GP+  A+V +     Y+LNP  ++    SLD+ V+GT+DAVLMVE EA
Sbjct: 135 SAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA    K          ++     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQANTALLDAIRSEFGAA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I E   ++     K  R  ++D+L++++V+ FS E    + GE+   F +I+ + VR  +
Sbjct: 255 ISEAYTITI----KQQRYARLDELREQVVAKFSGEEGQPSGGEVKDAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP   +FPYT+R+VS
Sbjct: 371 GEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +MS+V+++SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMSQVIAQSRSELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAA+
Sbjct: 551 ANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R+ K +DV+KEG
Sbjct: 611 QRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVKVLVLDVDNRGRIKLSIK 691


>gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia MC0-3]
 gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 715

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/695 (49%), Positives = 486/695 (69%), Gaps = 11/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K     D +  +K
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAAK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++      K      ++   + ++  +
Sbjct: 241 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis
           HAW-EB4]
 gi|257096707|sp|B0TQ97|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 704

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/689 (51%), Positives = 474/689 (68%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 12  EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVII V+  D E SP V+
Sbjct: 72  AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V Y+NG+Y+LNP + +   S L+L V+GT  AVLMV
Sbjct: 132 SMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGTDSAVLMV 191

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242
           E EA+ L E+V+L A+++GH++ + VI+AI +L     K P+      V D    +K+++
Sbjct: 192 ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNK-PVWDWAAPVQDETLVAKIKD 250

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
                + E  ++      K  R  Q+  +K        +E+   N  EI  +   ++ KV
Sbjct: 251 LAEAGLTEAYQIEV----KQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLGSLEKKV 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++    R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLGT  D Q 
Sbjct: 307 VRGRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY+
Sbjct: 367 IDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYS 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GD
Sbjct: 427 VRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 487 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIGSH 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + E  PR+  + I P++IR+VIG GG  IR + E+TG  + +DDDGTVKIASS+   
Sbjct: 547 RGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSNG-- 604

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA 
Sbjct: 605 -EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++ G  V VK+++ D +G+++LSMK
Sbjct: 664 VSDYLEVGQEVKVKVMEVDRQGRVRLSMK 692


>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis Bt4]
          Length = 713

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/701 (48%), Positives = 486/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289
                L   ++++ + +L  +  I +K  R  ++ ++     +    E       S ++ 
Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVSADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 710

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/694 (49%), Positives = 484/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++  A++       +  ++ 
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   E  AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
 gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
          Length = 697

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/695 (50%), Positives = 476/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    A E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E+++I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVISINPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQDVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           AMMD]
 gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           MC40-6]
 gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
 gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 714

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/699 (49%), Positives = 485/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW--DWQPAPK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291
            E     ++++   DL  +  + +K  R  ++ ++     +    +  +      ++  +
Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDAQAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM
           9187]
 gi|259534170|sp|C4L8X0|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM
           9187]
          Length = 720

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/683 (50%), Positives = 477/683 (69%), Gaps = 18/683 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + +ETG +ARQ+  AV+ +  +T VL TVV  +   +G+DFFPLTVNYQERTYA G+IPG
Sbjct: 15  VTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTVNYQERTYAAGRIPG 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+ +RE RP+E E L +R+IDR IRPLF + + NE QV+  VM  +   SP +V+M+  S
Sbjct: 75  GFFKREGRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIVAMIGTS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL +SG+PF GP+  A+V YIN QY+LNP + E Q S LDL V+GT  AVLMVE EA  
Sbjct: 135 AALAISGIPFNGPIGAARVGYINDQYILNPSVVELQESKLDLVVAGTAAAVLMVESEAAI 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFS---KLEEEMSQMIK 249
           L E+V+L A+++GH++ + VI+A+++ A     +P   V  + + +   K+ E     I 
Sbjct: 195 LPEEVMLGAVVYGHDQLQTVIKAVNEFAAEVGTKPWNWVAPAANVTLKAKIAELAVAAIG 254

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           E  R++    EK VR   I  LK+++V+   +   + + GE+  +F ++++ VVR  +L 
Sbjct: 255 EAYRIT----EKAVRYDAISALKQRIVAEIVAADETQDAGEVADLFHELESDVVRGRILR 310

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            + R+DGRD + +R +S   G+L R HGS+LF RG+TQA+V  TLGT  D Q +D ++G 
Sbjct: 311 GEPRIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTERDAQTIDEITGE 370

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           + + FM+HYNF P   GE   MG+P RREIGHGRLARR +  V+P  A+FPY +R+VSEI
Sbjct: 371 RTDRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLARRGVSAVIPSQAEFPYVVRVVSEI 430

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           TES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD F++LSDI GDEDHLG M
Sbjct: 431 TESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDSFVVLSDILGDEDHLGDM 490

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA+  RLHIL  M K +  +R  + +F
Sbjct: 491 DFKVAGTSEGVTALQMDIKIEGITKEIMQIALKQARDARLHILTVMDKAIGVARDDISDF 550

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            PR+  + I P++I++VIG GG VIR + E+TG  + ++DDGTVKIA+ S    EAA+E 
Sbjct: 551 APRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIELEDDGTVKIAAVSG---EAAQEA 607

Query: 610 IRSI----TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           IR I     DV E+ +IY+G+V ++ +FGAFV+    +DGLVHISQ++ ERV   SD +K
Sbjct: 608 IRRIQALTADV-EIGRIYEGKVTRLAEFGAFVNILPGKDGLVHISQITDERVKDVSDYLK 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD V  K+L+ D +G+I+LS+K
Sbjct: 667 VGDMVRTKVLEVDRQGRIRLSIK 689


>gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 697

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/695 (49%), Positives = 476/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQYGQHTVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + + NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAA+ ++ +PF GP+ GA+V  ING+Y+LNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMIGASAAMSIAAVPFRGPIAGARVGLINGEYILNPTHEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  ++AI + A    A E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPSKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSENGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis EO147]
 gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis C6786]
          Length = 714

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/701 (48%), Positives = 489/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKVVKEFQWGQHKVRLETGEIARQASGAVLVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA QL EDV+L A++FGH + +  I+AI +L +   K     +P   + 
Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWNWQPAAKNE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE---- 290
              +++ E    + + DL+ +  I EK  R  ++ ++     +  + E ++ N       
Sbjct: 243 ALIARVTE----LAQADLQAAYQIREKQSRSTKLKEVYAAATAKLAEEAAASNAEAADAA 298

Query: 291 -IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 722

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/694 (49%), Positives = 478/694 (68%), Gaps = 6/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG IARQS GAVL     TVVLATVV     K GQDFFPLT
Sbjct: 24  IFNKVTKTFQWGQHTVTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLT 83

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE  V+++ +  
Sbjct: 84  VDYLEKSYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSL 143

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP     + S +DL V+
Sbjct: 144 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKDSIMDLVVA 203

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + K  I AI +L +   K   V D K  ++
Sbjct: 204 GTEAAVLMVESEAQQLSEEVMLGAVVYGHEQSKTAINAIHELVRDAGKP--VWDWKAPAR 261

Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E  ++++    K+ L  +  I  K  R +        + +   ++   ++  ++  +  
Sbjct: 262 DEALIAKVDAHGKDKLVAAYQIRNKQARTQACRAAYADVFAGLKADGVEFDSVKVEGMLF 321

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGSSLF RG+TQA+V+ TLGT
Sbjct: 322 DIEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGT 381

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+LSG   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP  
Sbjct: 382 ERDAQRIDALSGEYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTK 441

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY+LR+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 442 EEFPYSLRVVSEITESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEDNRFAVL 501

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL EM 
Sbjct: 502 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARVHILGEMQ 561

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++E+R ++  F PR+    I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA
Sbjct: 562 KSMAEARTEVSNFAPRLFSFKINPEKIRDVIGKGGSVIRALTEETGTQINIEEDGTITIA 621

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A+ E A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ ER
Sbjct: 622 SSDPAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHER 681

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K +D + EG  V VK+L+ D++G+IKLSMK +
Sbjct: 682 VEKVTDYLSEGQIVKVKVLETDEKGRIKLSMKAL 715


>gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
 gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
          Length = 710

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/699 (48%), Positives = 480/699 (68%), Gaps = 13/699 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI++LAK   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNEA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + ++F+ HYNF P   GE   +G+P RREIGHGRLA+R +  V+P+  +FPY
Sbjct: 364 NLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELDKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697
           D ++ G  V VK+L+ D +G+++LS+K      Q  G+P
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEP 702


>gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           DSM 4166]
          Length = 701

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/681 (50%), Positives = 480/681 (70%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +S    + FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI  V+    ++ P + +M+  
Sbjct: 75  GGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GP+  A+V +     Y+LNP  ++    SLD+ V+GT+DAVLMVE EA
Sbjct: 135 SAALAISGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA    K          ++     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQANTALLDAIRSEFGAA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I E   ++     K  R  ++D+L++++V+ FS E    + G++   F +I+ + VR  +
Sbjct: 255 ISEAYTITI----KQQRYARLDELREQVVAKFSGEEGQPSAGDVKDAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP   +FPYT+R+VS
Sbjct: 371 GEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++V+++SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQVIAQSRSELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAA+
Sbjct: 551 ANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R+ K +DV+KEG
Sbjct: 611 QRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVKVLVLDVDNRGRIKLSIK 691


>gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1]
          Length = 708

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISSEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida]
          Length = 701

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA    K     +P V +++ F+ +  E  + 
Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +   ++     K  R  ++ +L+ + V+ FS E    +  E+  +F +I+ + VR  +
Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++V+ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    +AA+
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
           Bu]
          Length = 715

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/699 (49%), Positives = 487/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ + S LDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSEDV+L A++FGH + +  I+AI  L +   K     D +   K
Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVRDGGKPEW--DWQPAPK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++     +    +       + ++  +
Sbjct: 241 NEALIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTAAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|15599934|ref|NP_253428.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PAO1]
 gi|107103839|ref|ZP_01367757.1| hypothetical protein PaerPA_01004910 [Pseudomonas aeruginosa PACS2]
 gi|116052887|ref|YP_793204.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893835|ref|YP_002442704.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           LESB58]
 gi|254238523|ref|ZP_04931846.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|254244358|ref|ZP_04937680.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           2192]
 gi|296391567|ref|ZP_06881042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PAb1]
 gi|313109720|ref|ZP_07795660.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           39016]
 gi|81539753|sp|Q9HV59|PNP_PSEAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|122257102|sp|Q02FT2|PNP_PSEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702678|sp|B7V1F2|PNP_PSEA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|9951002|gb|AAG08126.1|AE004888_1 polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           PAO1]
 gi|115588108|gb|ABJ14123.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170454|gb|EAZ55965.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|126197736|gb|EAZ61799.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           2192]
 gi|218774063|emb|CAW29879.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|310882162|gb|EFQ40756.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           39016]
          Length = 701

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/696 (49%), Positives = 490/696 (70%), Gaps = 22/696 (3%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T + ++    + LETGRIARQ+ GAVL T  +  VL TVV  +S  +G+DFFPL+V+YQE
Sbjct: 5   TKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  + +S 
Sbjct: 65  KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSD 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           P + +M+  SAAL +SG+PF GP+  A+V +     Y+LNP  ++ Q S LD+ V+GT+D
Sbjct: 125 PDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVAGTED 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA----------KMCAKEPIVID 233
           AVLMVE EA++L+ED +L A++F H+E + VI A+ +LA          K  A+  ++++
Sbjct: 185 AVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENTVLVN 244

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIV 292
           +     ++ E+ + I +   ++     K  R  ++ +L+ + V+ F+ E    +   E+ 
Sbjct: 245 A-----IKAELGEAISQAYTITI----KQDRYNRLGELRDQAVALFAGEEEGKFPASEVK 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            VF  ++ + VR  +++ K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV 
Sbjct: 296 DVFGLLEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVA 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D+L G +++ FM+HYNF P + GE  RMG+P RREIGHGRLARR +  +
Sbjct: 356 TLGTARDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAM 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ 
Sbjct: 416 LPTQDEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEK 475

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QA   RL+IL
Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNIL 535

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M++V+++ R +L E  P +  M I  D+IR+VIG GG  IRGI E+T A ++I+DDG+
Sbjct: 536 GQMNQVIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGS 595

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           VKI   +    EAA+  + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+
Sbjct: 596 VKIYGETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQI 655

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           S +R+ K +DV++EG  V V +LD D+RG+IKLS+K
Sbjct: 656 SDKRIDKVTDVLQEGQEVKVLVLDVDNRGRIKLSIK 691


>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
 gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
          Length = 707

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/686 (49%), Positives = 480/686 (69%), Gaps = 8/686 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG IARQ+  AV+    +T V  T V  + +K+GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASA L LSG+PF GP+  A+V +IN QYVLNP  DE + S LDL V+GT +AVL
Sbjct: 128 IVAMIGASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLDLVVAGTDNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH++ + VI+ I++L K   KE      +  ++ L + ++
Sbjct: 188 MVESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALHDRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           Q+ +  +  +  I EK  R  Q+D +K+++ +   +E  + +  E+  +   ++ +VVR+
Sbjct: 248 QLAESRMGDAYRITEKQERYAQVDLIKEEVTAVLVAEDENVDVSEVTDILASLEKQVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQ 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G   + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A FPYT+R+
Sbjct: 368 LMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDHADFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+DF++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGEDFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++  R +
Sbjct: 488 LGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINGPREE 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   +   
Sbjct: 548 ISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGIK--- 604

Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           A+E IR I D+    EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D
Sbjct: 605 AKEAIRRIEDITAEVEVGRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ++ G  V VK+L+ D +G+I+LSMK
Sbjct: 665 YLQMGQEVPVKVLEIDRQGRIRLSMK 690


>gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 712

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+   +  + 
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVDSSAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMVRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVTVKVVEIDRQGRIRLTMK 689


>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           phytofirmans PsJN]
 gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
           phytofirmans PsJN]
          Length = 718

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/699 (48%), Positives = 487/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP R    + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K     D +  +K
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEW--DWQPAAK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++          + ++      ++  +
Sbjct: 241 NEPLIARVTELAQADLLAAYQLRDKQARSAKLKEVYAATSKKLEEDAAAGGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M+  +S +   L ++ PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LSKMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++ ER+   +D +K+G  V VK++  D++G+++LS K +
Sbjct: 661 IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           KT2440]
 gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           KT2440]
          Length = 701

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA    K     +P V +++ F+ +  E  + 
Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +   ++     K  R  ++ +L+ + V+ FS E    +  E+  +F +I+ + VR  +
Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++V+ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    +AA+
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
          Length = 709

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/690 (50%), Positives = 480/690 (69%), Gaps = 13/690 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           + +    L LETG IARQS GA++ +  +TVVL TVV  +  K  QDFFPLTV+YQERTY
Sbjct: 13  LSYGKHQLTLETGEIARQSSGAIMVSLDDTVVLVTVVGRKDAKPDQDFFPLTVDYQERTY 72

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E EIL SR+IDR +RPLF + + NE Q++  VM  D +    +
Sbjct: 73  AAGKIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPESFYNEVQIVATVMSSDPQIDSDI 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ ASAAL +SG+PF+GP+  A+V Y+NGQYVLNP  DE  +  +DL V+GT  AVLM
Sbjct: 133 PAMIGASAALAISGIPFDGPIGAARVGYLNGQYVLNPTKDELVESKMDLVVAGTAKAVLM 192

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KLE 241
           VE EA +LSEDV+L A++FGH + + VI AI+++A    +     D  D++       L 
Sbjct: 193 VESEAQELSEDVMLGAVVFGHEQMQAVINAINEMADSVGQ-----DDWDWTPAPKNEALI 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQA 300
             ++ + + +L+ +  + +K  R +Q+D ++ K+    ++ E  + +  EI  +F  ++A
Sbjct: 248 ARINALAENELKAAYAVRQKQARTQQVDAIRAKVSEALATPEFENVSRNEIGELFSALEA 307

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR  +L  + R+DGRD+ TVR I+ + G+L RTHGS LF RG+TQA+VV TLG+  D 
Sbjct: 308 KIVRGQILSGEPRIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDS 367

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G   + FM+HYNF P +TGE  R+G P RREIGHGRLA+RA+  VLP   +  
Sbjct: 368 QTIDALQGEYSDRFMLHYNFPPYSTGETGRVGTPKRREIGHGRLAKRALVAVLPSEEECG 427

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+KDG  F +L+DI 
Sbjct: 428 YAIRVVSEITESNGSSSMASVCGGCLSLMDAGVPVKTHVAGIAMGLIKDGGRFAVLTDIL 487

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+D GITA+QMD+KI GI++ IM +AL QAK GRLHIL  M + + 
Sbjct: 488 GDEDHLGDMDFKVAGSDKGITALQMDIKINGITKEIMQVALSQAKEGRLHILGIMKQAMP 547

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ +F PR+  M I P++IR+VIG GG VIR + E+TG  ++IDD+G + IA  S 
Sbjct: 548 SVRPEVSDFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDEGNITIACVSG 607

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              E A++ I  I    EV KIY+G VVK++DFGA V+    +DGL+HISQ+S ER+A  
Sbjct: 608 DAGELAKKRIEDIVAEVEVGKIYEGPVVKLLDFGALVNILPGKDGLLHISQISHERIANV 667

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SD +KEG  V VK+L+ DD+G+++LSMK +
Sbjct: 668 SDHLKEGQVVKVKVLEVDDKGRMRLSMKAL 697


>gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
 gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
 gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
           8457]
 gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|227080828|ref|YP_002809379.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
 gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
           330286]
 gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
 gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae
           MJ-1236]
 gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
 gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
 gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
 gi|81545361|sp|Q9KU76|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782745|sp|C3LSQ2|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
 gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
 gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
           8457]
 gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
 gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
 gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
           330286]
 gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236]
 gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
 gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
 gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
          Length = 709

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           W619]
 gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619]
          Length = 701

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA    K     +P V +++ F+ +  E  + 
Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +   ++     K  R  ++ +L+ + ++ FS E    +  E+  +F +I+ + VR  +
Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1]
 gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1]
 gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           BIRD-1]
          Length = 701

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA    K     +P V +++ F+ +  E  + 
Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +   ++     K  R  ++ +L+ + V+ FS E    +  E+  +F +I+ + VR  +
Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSASEVKDIFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++V+ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    +AA+
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 715

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  +  +  I EK  R +QID +K  +V+  +++  + +EG I+ +   +++ +VR 
Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVVAQLTTQDETISEGAIIDIITALESSIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++     +A
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV + +D + 
Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G  V VK+++ D + +I+L+MK  D N   P+
Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697


>gi|91228271|ref|ZP_01262207.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           12G01]
 gi|269966864|ref|ZP_06180937.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           40B]
 gi|91188148|gb|EAS74450.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           12G01]
 gi|269828531|gb|EEZ82792.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           40B]
          Length = 711

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/694 (49%), Positives = 484/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ +  I+AI++  A++       +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIQAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+ +++ + +  L  +  I EK  R  +I ++  ++     +E    +  EI ++F D
Sbjct: 241 TALKNKIADLAEAKLVEAYQITEKMARYDRIHEIAAEVNEVLLAEDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   E  AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 T---EGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis TXDOH]
 gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           thailandensis E264]
          Length = 713

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/701 (48%), Positives = 486/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289
                L   ++++ + +L  +  I +K  R  ++ ++     +    E       + ++ 
Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 697

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQSKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    A E   +      
Sbjct: 182 GTEAAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPAKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+      E V+ +FED
Sbjct: 242 TLREQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGLAEEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+GD F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGDRFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
 gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
          Length = 697

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/697 (49%), Positives = 470/697 (67%), Gaps = 14/697 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T +I++    + LETG+IARQ+  AV+   G+T VL TVV  +     ++FFPLT
Sbjct: 1   MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADPSKNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGG+L+RE RP+E E L  R+IDR IRPLF   + NE QV+  VM  
Sbjct: 61  VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P + +++  SAAL +SG+PF GP+  A+V Y +G Y+LNP   E  + +LDL V+
Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFNGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +LSED +L A++FGH E +P+I+ I + A     E     + D+  
Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTE-----TWDWKP 235

Query: 240 LE--EEMSQMIKEDLRVSC----FIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIV 292
            E  E +   IK+    +      I EK  R  ++ +L++  V+ F++ E  +   GE+ 
Sbjct: 236 AEQNETLKAAIKDKFGAALGEAYTITEKMARYAKVGELREACVAEFATGEEGAPEAGEVK 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +F  I+  VVR  ++  K R+DGR  + VR I  QVG L +THGS+LF RG+TQAIV  
Sbjct: 296 ELFGKIEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTA 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   D Q++D+L G+ ++ FM+ YNF P   GE   +G+P RREIGHGRLARR +  V
Sbjct: 356 TLGGMRDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAV 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P    FPYT+R+VSEITES+GSSSMA+VCG+S+ALMDAGVP++ PVAGIAMGLVK+ D 
Sbjct: 416 VPSVQDFPYTVRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDG 475

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA  GRLHI
Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K +SESR ++ +  P +  + I PD+IR+VIG GG  IR + ++TG  ++I+DDG
Sbjct: 536 LGEMNKAISESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTDETGCTIDIEDDG 595

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +VKI   +  + + A   +  IT   EV  IY+G+V +V+DFGAFV      +GL+HISQ
Sbjct: 596 SVKIYGETREKADEAVRRVEEITAEAEVGVIYEGKVTRVVDFGAFVAIMPGTEGLLHISQ 655

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ ERV K +D V EG+ + VK+LD D RG+IKLSMK
Sbjct: 656 IAEERVEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMK 692


>gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
 gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
          Length = 701

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/681 (49%), Positives = 476/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA    K     +P V +++ F+ +  E  + 
Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +   ++     K  R  ++ +L+ + V+ FS E    +  E+  +F +I+ + VR  +
Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSAAEVKDIFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++V+ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    +AA+
Sbjct: 551 ANAPTMISMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|187470962|sp|A4SJR9|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 713

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/689 (49%), Positives = 475/689 (68%), Gaps = 4/689 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  TVV  +    G+DFFPLTVNYQERTY
Sbjct: 8   FQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+ RRE RP+E E L SR+IDR IRPLF + + NE QV+  VM  +   SP +
Sbjct: 68  AAGRIPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVNPLVSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+M+ ASAAL +SG+PF GP+  A+V Y+NGQYVLNP   E  Q  LDL V+GT +AVLM
Sbjct: 128 VAMIGASAALAISGIPFGGPIAAARVGYMNGQYVLNPTTAELPQSDLDLVVAGTANAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE EA  LSE+V+L A+++GH + + VI AI++ A     +P           L+ ++++
Sbjct: 188 VESEAAILSEEVMLGAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPATNEALKAKIAE 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           +   +L  +  I EK VR   I  +K++++    +     +  +I   F  +++++VR  
Sbjct: 248 LATAELGEAYRITEKAVRYAAIGAIKQRVIEQVIAAGVEDDAKKIGEEFHSLESRIVRGR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++  + R+DGRD E +R +S   G+L R HGS+LF RG+TQAIVV TLGT  D Q +D L
Sbjct: 308 VVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDEL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G + + FM+HYNF P   GE   MG+P RREIGHGRLA+R +  V+P  A+FPY +R+V
Sbjct: 368 AGHRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QA+  RLHIL  M + +   R ++
Sbjct: 488 GDMDFKVAGTTQGITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI-ASSSLAEIEA 605
            +F PR+  + I P++I++VIG GG VIR + E+TG  + +DDDGTV+I A ++ A +EA
Sbjct: 548 SDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEA 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R  I +IT   EVN+IY+G+VV++ DFGAFV+    +DGLVHISQ++  RV   +D +K
Sbjct: 608 IRR-IEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADFLK 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            GD V VK+L+ D +G+++LS+K  +  T
Sbjct: 667 LGDVVKVKVLEVDRQGRVRLSIKEANAPT 695


>gi|163802308|ref|ZP_02196202.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
 gi|159173837|gb|EDP58651.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
          Length = 710

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/694 (49%), Positives = 481/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQASAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E D   LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGSARVGHIDGQLVLNPSNTELDASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI+AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVIKAINEFKSEVATPAWDWVAPQEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    +  EI ++F D
Sbjct: 241 TALVNKIAELAEAKLDQAYQITEKMARYDRIHEIAGEVNDVLLAEDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTQTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|152988444|ref|YP_001350781.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PA7]
 gi|187611271|sp|A6VCJ6|PNP_PSEA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150963602|gb|ABR85627.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           PA7]
          Length = 701

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/695 (49%), Positives = 486/695 (69%), Gaps = 20/695 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T + ++    + LETGRIARQ+ GAVL T  +  VL TVV  +S  +G+DFFPL+V+YQE
Sbjct: 5   TKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  + +S 
Sbjct: 65  KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSD 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           P + +M+  SAAL +SG+PF GP+  A+V +     Y+LNP  ++ Q S LD+ V+GT+D
Sbjct: 125 PDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVAGTED 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---------EPIVIDS 234
           AVLMVE EA++L+ED +L A++F H+E + VI A+ +LA    K         E  V+ +
Sbjct: 185 AVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENTVLVN 244

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVS 293
              ++L E +SQ        +  I  K  R  ++ +L+ + V+ F+ E    +   E+  
Sbjct: 245 AIKAELGEAISQ--------AYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKD 296

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           VF  ++ + VR  +++ K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV T
Sbjct: 297 VFGLLEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVAT 356

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D+L G +++ FM+HYNF P + GE  RMG+P RREIGHGRLARR +  +L
Sbjct: 357 LGTARDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAML 416

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F
Sbjct: 417 PTQDEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKF 476

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QA   RL+IL 
Sbjct: 477 AVLTDILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILG 536

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++V++  R +L E  P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG+V
Sbjct: 537 QMNQVIARPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRAICEETKASIDIEDDGSV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KI   +    EAA++ + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S
Sbjct: 597 KIYGETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQIS 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +R+ K +DV++EG  V V +LD D+RG+IKLS+K
Sbjct: 657 DKRIDKVTDVLQEGQEVKVLVLDVDNRGRIKLSIK 691


>gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           CbuG_Q212]
 gi|226702642|sp|B6J0K5|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
           CbuG_Q212]
          Length = 696

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/693 (49%), Positives = 479/693 (69%), Gaps = 14/693 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    +  ETG +ARQ+ GAV+   G+TV+L +VV  +  ++G+DFFPLT+NYQE+TY
Sbjct: 8   FQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTINYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D +    +
Sbjct: 68  AAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ ASAA+ LSG+PF G +  A+V Y  G+Y+LNP LDE + S LDL V+GT+DAVLM
Sbjct: 128 PAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           VE EA +L E V+L A++ GH   +  I+AI++  +         EP  +++     LE+
Sbjct: 188 VESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA----LEK 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDI 298
            + +  +  L+ +  I EK  R  QI  ++ ++++  ++E     ++ NE E+  +F ++
Sbjct: 244 WVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIFHEL 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L  + R+DGRDS+TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLGT  
Sbjct: 304 ERRIVREQILTGQPRIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTER 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G ++ +F+ HYNF P   GEV  M  P RREIGHGRLA+RA+ PV+P   +
Sbjct: 364 DAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDK 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP   PVAGIAMGL+K+ D + +LSD
Sbjct: 424 FPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM  AL QAK GRLHIL+ M+KV
Sbjct: 484 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L + R Q+ +  P+   M I P++IR+VIG GG VIR I E T   ++I DDGT+KIA+ 
Sbjct: 544 LDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKIAAH 603

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +  E EAA+  I  +T   E+ K+Y+G VVK+ DFGAFV       GLVHISQ++ ERV 
Sbjct: 604 TTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQERVE 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
              D ++EG  + VK+++ D +G+++LSMK +D
Sbjct: 664 NVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696


>gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           334]
 gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           CbuK_Q154]
 gi|226702641|sp|B6J6S7|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           334]
 gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
           CbuK_Q154]
          Length = 696

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/693 (49%), Positives = 479/693 (69%), Gaps = 14/693 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    +  ETG +ARQ+ GAV+   G+TV+L +VV  +  ++G+DFFPLTVNYQE+TY
Sbjct: 8   FQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D +    +
Sbjct: 68  AAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ ASAA+ LSG+PF G +  A+V Y  G+Y+LNP LDE + S LDL V+GT+DAVLM
Sbjct: 128 PAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           VE EA +L E V+L A++ GH   +  I+AI++  +         EP  +++     LE+
Sbjct: 188 VESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA----LEK 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDI 298
            + +  +  L+ +  I EK  R  QI  ++ ++++  ++E     ++ NE E+  +F ++
Sbjct: 244 LVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIFHEL 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L  + R+DGRD++TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLGT  
Sbjct: 304 ERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTER 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G ++ +F+ HYNF P   GEV  M  P RREIGHGRLA+RA+ PV+P   +
Sbjct: 364 DAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDK 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP   PVAGIAMGL+K+ D + +LSD
Sbjct: 424 FPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM  AL QAK GRLHIL+ M+KV
Sbjct: 484 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L + R Q+ +  P+   M I P++IR+VIG GG VIR I E T   ++I DDGT+KIA+ 
Sbjct: 544 LDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKIAAH 603

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +  E EAA+  I  +T   E+ K+Y+G VVK+ DFGAFV       GLVHISQ++ ERV 
Sbjct: 604 TTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQERVE 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
              D ++EG  + VK+++ D +G+++LSMK +D
Sbjct: 664 NVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696


>gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
           493]
 gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           Dugway 5J108-111]
 gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
           331]
 gi|81629147|sp|Q83D87|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610292|sp|A9KFK6|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610293|sp|A9ND62|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493]
 gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111]
 gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           331]
          Length = 696

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/693 (49%), Positives = 479/693 (69%), Gaps = 14/693 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    +  ETG +ARQ+ GAV+   G+TV+L +VV  +  ++G+DFFPLTVNYQE+TY
Sbjct: 8   FQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D +    +
Sbjct: 68  AAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ ASAA+ LSG+PF G +  A+V Y  G+Y+LNP LDE + S LDL V+GT+DAVLM
Sbjct: 128 PAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           VE EA +L E V+L A++ GH   +  I+AI++  +         EP  +++     LE+
Sbjct: 188 VESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA----LEK 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDI 298
            + +  +  L+ +  I EK  R  QI  ++ ++++  ++E     ++ NE E+  +F ++
Sbjct: 244 WVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIFHEL 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L  + R+DGRD++TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLGT  
Sbjct: 304 ERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTER 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G ++ +F+ HYNF P   GEV  M  P RREIGHGRLA+RA+ PV+P   +
Sbjct: 364 DAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDK 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP   PVAGIAMGL+K+ D + +LSD
Sbjct: 424 FPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM  AL QAK GRLHIL+ M+KV
Sbjct: 484 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKV 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L + R Q+ +  P+   M I P++IR+VIG GG VIR I E T   ++I DDGT+KIA+ 
Sbjct: 544 LDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKIAAH 603

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +  E EAA+  I  +T   E+ K+Y+G VVK+ DFGAFV       GLVHISQ++ ERV 
Sbjct: 604 TTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQERVE 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
              D ++EG  + VK+++ D +G+++LSMK +D
Sbjct: 664 NVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696


>gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 759

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/705 (47%), Positives = 489/705 (69%), Gaps = 10/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ++GAVL     TV+LATV   +S K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGDKTVVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE  V+++ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+  SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIGVSAALAISGIPFAGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSED++L  ++FGH +    I AI +L +   K   V D +  ++
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGGVVFGHEQANIAINAIHELVREAGKP--VWDWQAPAE 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E    ++  + +E LR    I  K  R + + +    ++    +    ++ G++  +  
Sbjct: 241 DEAFVAKVKDLAEEKLRAVYQIRSKQARTQALREANASVMEALKASGEPFDAGKVGDLLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I++K+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 AIESKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + FM HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  RLHIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E++ ++  F P++  M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA
Sbjct: 541 EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++   + + A++ I  IT   E+ KIY+G VVK++DFGA ++    +DGL+HISQ++ ER
Sbjct: 601 ATDAEKADVAKKRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQ---NTGKP 697
           V K +D + EG  V VK+L+ D++G++KLSM+ ++D+   ++G+P
Sbjct: 661 VEKVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGDSGRP 705


>gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia AU 1054]
 gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia HI2424]
 gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424]
          Length = 715

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/695 (49%), Positives = 485/695 (69%), Gaps = 11/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAPK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++      K      ++   + ++  +
Sbjct: 241 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus
           S110]
 gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           S110]
          Length = 772

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/696 (47%), Positives = 480/696 (68%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAV+     TV+LATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVTKSFQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +M+  SAAL +SG+PF GP+  A+V YINGQYVLNP +       +DL V+
Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L  ++FGH +    I AI +L +   K   V D +  ++
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKP--VWDWQAPAE 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E    ++  + +E LR    I  K  R + + +    +++        ++ G++  +  
Sbjct: 241 DEAFVAKVKSLAEEKLRAVYQIRSKQARTQALREANASVMNTLKESGEPFDAGKVNDLLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I++K+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQ +VV TLGT
Sbjct: 301 AIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E++ ++ +F PR+  + I P++IR+VIG GG VIRG+ E+TG  +NID+DGT+ IA
Sbjct: 541 EAMGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+   + E A++ I  IT   E+ K+Y+G V K++DFGA ++    +DGL+HISQ++ ER
Sbjct: 601 STDPEKAEFAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V K +D + EG  V VK+L+ D++G++KLSMK + +
Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTE 696


>gi|77359947|ref|YP_339522.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588883|sp|Q3IJ73|PNP_PSEHT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76874858|emb|CAI86079.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Pseudoalteromonas haloplanktis TAC125]
          Length = 708

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/688 (50%), Positives = 475/688 (69%), Gaps = 9/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQER 
Sbjct: 7   EFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E  P 
Sbjct: 67  YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++  SAAL +SG+PF GP+   +V YI+G+YVLNP L E ++  LDL V+GT +AVL
Sbjct: 127 MVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAGTDNAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243
           MVE EA+ L+ED++L A+++GH + + +I AI +  K  A +P       +K+ S LEE+
Sbjct: 187 MVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEF-KAEAGKPTWDWTAPAKNVS-LEEK 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300
           ++ +  + +  +  I +K  R + +   K ++V+  +SE +   S ++ EI  +F  ++ 
Sbjct: 245 VASIAADKVGEAYRITDKVARKEALGVAKDEVVAVLTSELAEGESLDKQEIGKIFGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D 
Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P   +FP
Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTLTEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M K +S
Sbjct: 485 GDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDKAIS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
               +L +F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++  
Sbjct: 545 APSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV   
Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D + EG  V VK+L+ D +G+++LS+K
Sbjct: 665 TDHLSEGQEVKVKVLEVDRQGRVRLSIK 692


>gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
 gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
          Length = 709

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia J2315]
 gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 713

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/695 (49%), Positives = 486/695 (69%), Gaps = 11/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ + S LDL V+
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSEDV+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 181 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAPK 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++      K      ++   + ++  +
Sbjct: 239 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 298

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            ++  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 299 GNILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 359 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 419 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 539 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 599 VVTIASTSSDGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 659 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693


>gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila
           L48]
 gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Pseudomonas entomophila L48]
          Length = 701

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/681 (50%), Positives = 475/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI+A+ +LA   AK     +P   +S  F  +  E  + 
Sbjct: 195 QELTEDQMLGAVLFAHDEFQAVIKAVKELAAEAAKPTWDWKPADKNSALFDAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +   ++     K  R  ++ +L+ + V+ FS E    + GE+  +F +I+ + VR  +
Sbjct: 255 VSQGYTITV----KADRYARLGELRDQAVAKFSGEEGQPSAGEVKDIFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ ESR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIGESRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    +AA+
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAADAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +DV+KEG
Sbjct: 611 QRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDVLKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|27904826|ref|NP_777952.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|38605103|sp|Q89AF8|PNP_BUCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27904224|gb|AAO27057.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 693

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/685 (48%), Positives = 485/685 (70%), Gaps = 6/685 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AVL +  +T V  TVV  + L+  Q FFP+TVNYQERT
Sbjct: 8   KFQYGQHIVTLETGIMARQATAAVLTSMDDTTVFVTVVGQKKLQTEQKFFPMTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+ENEILI+R+IDR IRPLF K + NE Q+I  V+  + + +P 
Sbjct: 68  YAAGRIPGGFFRREGRPSENEILIARLIDRPIRPLFPKRFFNEVQIIATVVSLNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL +SG+PF GP+  A++ YIN QY+LNP ++E    SLDL +SGT+++VL
Sbjct: 128 IVAIIGASAALSISGMPFLGPIGAARIGYINNQYILNPNVNEIKSSSLDLIISGTEESVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLEEE 243
           MVE EAN L+E+ +++AI +GH + K VI+ I   AK   +   E  +    D   LE+ 
Sbjct: 188 MVEAEANMLTEEQIINAINYGHEQQKIVIKNIEHFAKKVKIPVWEQCLYPVND--DLEKR 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           + ++ ++++  +  I +K +R   +D +K K +    SE+S  +E EI S+  +I+ K+V
Sbjct: 246 IIEISEQEIVKAYNIFDKVIRLDVLDKIKSKAIEIIISEYSGIDEFEITSIISNIERKIV 305

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +L  ++R+DGR+ + +R +  + G+L R HGS+LF RG+TQ++V VTLGT  D Q +
Sbjct: 306 RNRVLKNRIRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSVTLGTSRDAQNL 365

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L G + ++F+ HYNF P A GE+  +G+P RREIGHG+LA+R+I  V+P+   FPYT+
Sbjct: 366 DELLGDKTDNFLFHYNFPPYAVGEIGMVGSPKRREIGHGKLAKRSILAVMPKLDLFPYTI 425

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEITES+GSSSMA+VCG+SLALMDAGVPIS  +AGIAMGL+K+GDDF++L+DI GDE
Sbjct: 426 RIVSEITESNGSSSMASVCGASLALMDAGVPISNAIAGIAMGLIKEGDDFVVLTDILGDE 485

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFK++G+  GITA+QMD+K+ GI+  IM +AL QAK  R+HILN M K L+  R
Sbjct: 486 DHLGDMDFKISGSKKGITALQMDIKVKGITNEIMKLALYQAKNARIHILNIMKKSLNVPR 545

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             +  F PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKI++    + 
Sbjct: 546 KDISIFAPRIHTIKINPEKIKDVIGKGGSVIRMLTEETGTTIEIEDDGTVKISAVMQEKA 605

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A + I+ IT   EV  +Y G+V +++DFGAFV     ++GLVHISQ++ +RV K SD 
Sbjct: 606 KCAIQRIKEITAEVEVGSVYTGKVTRIVDFGAFVSIGIGKEGLVHISQIAHKRVDKVSDH 665

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++    ++VK+L+ D +G+++LS+K
Sbjct: 666 LRLHQEIFVKVLEVDRQGRLRLSIK 690


>gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira
           multiformis ATCC 25196]
 gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196]
          Length = 701

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/690 (50%), Positives = 477/690 (69%), Gaps = 13/690 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           + +    L  ETG IARQ+  A++ + G+TVVL TVV  +S K GQDFFPLTV+YQER+Y
Sbjct: 7   VTYGSHQLTFETGEIARQAHAAIMVSMGDTVVLVTVVGAKSAKQGQDFFPLTVDYQERSY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + +RE RP+E EIL SR+IDR IRPLF + + NE QV+  V+  D E    +
Sbjct: 67  AAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNEVDADI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ ASAAL+LSG+PF GP+  A++ YING+YVLNP      Q  L+L V+GT+ AVLM
Sbjct: 127 PAMLGASAALVLSGIPFNGPIGAARIGYINGEYVLNPDTSALKQTQLNLVVAGTRQAVLM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEE 242
           VE +A +LSEDV+L AI++GH + +  I+AI++LA          EP   D      L  
Sbjct: 187 VESDAMELSEDVMLGAIVYGHQQMQVAIDAINELADEAGVTAWDWEPPARDPA----LAV 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDIQA 300
           +++++ + DLR +    +K VR + ID++  ++ +    E     + + V  + F  +++
Sbjct: 243 KIAELAENDLRAAFRQKQKQVRSETIDNIWTRVFTELGVEDGEGPDAQAVKEACFA-LES 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR+ +LD + R+DGRD+ TVR I+ + GLL RTHGS+LF RG+TQA+VV TLGT  DE
Sbjct: 302 RIVRSQILDGEPRIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDE 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G     FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP   +F 
Sbjct: 362 QKIDALQGDYSERFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAVLPSPEEFG 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y+LR+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+ F +L+DI 
Sbjct: 422 YSLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKGHVAGIAMGLIKEGNRFAVLTDIL 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ I+  AL QA+ GR+HIL  M +VL 
Sbjct: 482 GDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEILHAALVQAREGRMHILAIMRQVLP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + E  PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDGTV IA  + 
Sbjct: 542 ARREDISEHAPRIIKIRINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGTVMIACVNA 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              E A++ I  IT   EV ++Y G V+K++DFGA V     +DGL+HISQ++ ERV   
Sbjct: 602 EGGELAKKRIEDITAEVEVGRVYDGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D +KEG  V VK+L+ DD+G+++LSMK V
Sbjct: 662 GDHLKEGQVVRVKVLEADDKGRLRLSMKAV 691


>gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 710

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/699 (48%), Positives = 479/699 (68%), Gaps = 13/699 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI++LAK   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNDA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + ++F+ HYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 SLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPDLDKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697
           D ++ G  V VK+L+ D +G+++LS+K      Q  G+P
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEP 702


>gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
 gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
          Length = 709

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|315126162|ref|YP_004068165.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
           SM9913]
 gi|315014676|gb|ADT68014.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
           SM9913]
          Length = 708

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/688 (49%), Positives = 476/688 (69%), Gaps = 9/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQER 
Sbjct: 7   EFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E  P 
Sbjct: 67  YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+  SAAL +SG+PF GP+  ++V YING+YVLNP L E ++  LDL V+GT +AVL
Sbjct: 127 MVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGTDNAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243
           MVE EA+ L+EDV+L A+++GH + + +I+AI++  K  A +P        K+ + LEE+
Sbjct: 187 MVESEADVLAEDVMLGAVVYGHEQSQSIIKAINEF-KAEAGKPTWDWTAPEKNVA-LEEK 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300
           ++ +  + +  +  I +K  R + +   K  +V   +SE +   + ++ E+  VF  ++ 
Sbjct: 245 VATLAADKVGEAYRITDKVARKEALTAAKDAVVEALTSELAEGETLDKQEVGKVFGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D 
Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P   +FP
Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTLTEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ ++F++LSDI 
Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +S
Sbjct: 485 GDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMDEAIS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
               +L  F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++  
Sbjct: 545 APSEELSMFAPRIYTMQIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV   
Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D + EG  V VK+L+ D +G+++LS+K
Sbjct: 665 ADHLSEGQEVKVKVLEVDRQGRVRLSIK 692


>gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 715

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTNKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   +++ +VR 
Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALESSIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++     +A
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV + +D + 
Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G  V VK+++ D + +I+L+MK  D N   P+
Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697


>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 711

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/693 (48%), Positives = 476/693 (68%), Gaps = 10/693 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+ I+ L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 NIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
 gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
          Length = 696

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/688 (49%), Positives = 480/688 (69%), Gaps = 11/688 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V++E  GR + +ETG++A+Q+ GAV+ + G+T VL T V  ++ K+GQDFFPLTVNYQE+
Sbjct: 5   VQVECGGRTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQEK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGG+ +RE+RP++NE L  R+IDR IRPLF   + N+TQ++  V+  D ++ P
Sbjct: 65  AYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDNDP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            ++SMV ASAALM+S +PF+GP+ G +V  I+G++V NP  +E ++  +++ V+ ++DA+
Sbjct: 125 GILSMVGASAALMVSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSDIEIVVAASKDAI 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKE---PIVIDSKDFSKL 240
           +MVE  A ++SE+ +L+AI FGH   + ++ A  +LA+    AK    P V++    +K+
Sbjct: 185 IMVEGSAAEVSEEDMLEAIFFGHAAIQGLLAAQVELAEKAGVAKREVLPPVVNEALKAKV 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +E     +KE +R    I  K  R   ID +  ++++  + E     + EI     D + 
Sbjct: 245 KELAYSRMKEAVR----IKSKVERHNTIDTITGEVLTALAEEFEGAAK-EIKGFLGDFEY 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  ++    R+DGRD++T+R I+ +VGLL R HGS+LF RG+TQA+VV TLGT  DE
Sbjct: 300 DLVREHIIKDGERIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDE 359

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +DSL G  +  F++HYNF P + GE S   AP RREIGHG LA RA+  V+P+   FP
Sbjct: 360 QRIDSLFGESKKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALARVVPKHESFP 419

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RIVS+I ES+GSSSMA+VCG S+++MDAG+PI  PVAGIAMGL+K+GDDF ILSDI 
Sbjct: 420 YTIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDIL 479

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT +G+TA+QMD+KIGG++  IM +AL+QA  GRLHIL++M++ + 
Sbjct: 480 GDEDHLGDMDFKVAGTSTGVTALQMDIKIGGVTREIMGVALKQAHEGRLHILSKMAETIG 539

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            S+ +L  F PR+  + +  D+IR+VIG GGK IRGI E TG  ++IDD G + IAS+  
Sbjct: 540 TSKAELSTFAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKINIASTDK 599

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  + A +MIR +T   E  K+Y G V KVM+FGAFV      DGLVHIS+L TERV   
Sbjct: 600 AACDMAIKMIRDLTAEAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISELDTERVKNV 659

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +DV+KEGD V VK +  D +GKIKLS K
Sbjct: 660 TDVLKEGDKVLVKCIGIDKQGKIKLSRK 687


>gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae L20]
 gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|187470959|sp|A3MZU3|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096735|sp|B3GXC1|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 715

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   +++ +VR 
Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++     +A
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV + +D + 
Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G  V VK+++ D + +I+L+MK  D N   P+
Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697


>gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
 gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
          Length = 709

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 715

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/689 (48%), Positives = 476/689 (69%), Gaps = 2/689 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   +++ +VR 
Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALESSIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q VD 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIVDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++     +A
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV + +D + 
Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            G  V VK+++ D + +I+L+MK ++ +T
Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMKDLNNDT 695


>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
           adenylyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
           Polynucleotide adenylyltransferase (EC 2.7.7.19)
           [Burkholderia rhizoxinica HKI 454]
          Length = 768

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/701 (48%), Positives = 488/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 47  MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVAAKSAKPGQDFFPLT 106

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 107 VDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSI 166

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +    + +M+ ASAAL +SG+PF GP+  A+V YI+ Q+VLNP   + + S LDL V+
Sbjct: 167 NPDIPADIPAMIGASAALAISGIPFNGPIGAARVAYIDNQFVLNPTRSQSKASKLDLVVA 226

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL E+V+L A++FGH + +  I+AI  L K   K     +P   D 
Sbjct: 227 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVKEGGKPEWDWQPAPKDE 286

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289
              +++ E    +   +L+ +  I +K  R  ++ ++   + +  + +  +      +  
Sbjct: 287 ALIARVTE----LALAELQAAYQIRQKQQRSAKLKEVYAAVTAKLAEQSVAAGTAVVDAA 342

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++A++VR+ +L+ + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA+
Sbjct: 343 TVGNILFDLEARIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAL 402

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D++ G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+R++
Sbjct: 403 VVATLGTKGDEQIIDAIEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRSL 462

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            P LP   +F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 463 VPCLPGDDEFGYTIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 522

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QA+ GRL
Sbjct: 523 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAREGRL 582

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL++M+  +  + +QL +F PR+  M I P++IR+VIG GG VIR + E+T   ++I D
Sbjct: 583 HILDKMTSAVPSTNMQLSQFAPRMITMKINPEKIRDVIGKGGSVIRALTEETNTTIDISD 642

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS+S   +  A++ I +IT   EV +IY+G ++K++DFGA V+    RDGL+HI
Sbjct: 643 DGVVTIASTSPEGMAEAKKRIENITAEVEVGQIYEGAILKLLDFGAIVNILPGRDGLLHI 702

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S+++ ER+   +D +KEG  V VK++  D++G+++LS+K +
Sbjct: 703 SEIANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSVKAL 743


>gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
           albensis VL426]
          Length = 709

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 480/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVAIPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
 gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
          Length = 723

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/704 (48%), Positives = 485/704 (68%), Gaps = 10/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SG+PF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQLATSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI +L +   K      P   + 
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWAPAAKNE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              +K+ E    +++E  ++     +K  R +++ ++   + +  ++     ++ E+ ++
Sbjct: 243 PLIAKVTEVALPLLQEAYQLR----QKSARSQKLKEVNANVAAALAAAGVEADKVEVGNI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             D++AK+VR  +L  + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TL
Sbjct: 299 MFDLEAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP
Sbjct: 359 GTKSDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +  +F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F 
Sbjct: 419 KDDEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QA+ GRLHIL++
Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAREGRLHILHK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ 
Sbjct: 539 MQEAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTIT 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS+S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  
Sbjct: 599 IASTSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVN 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ERV    D +KEG  V VKL+  D++G+++LS+K      G  I
Sbjct: 659 ERVKDIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALTEEGGSI 702


>gi|90416139|ref|ZP_01224071.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2207]
 gi|90331864|gb|EAS47078.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2207]
          Length = 715

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/693 (49%), Positives = 473/693 (68%), Gaps = 4/693 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETGRIARQ+ GAVL +  +T VL TVV  R  K G DFFPL V+Y E
Sbjct: 5   TKSFQYGNHTVTLETGRIARQATGAVLCSIDDTSVLCTVVGAREAKPGMDFFPLGVHYIE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE RP E E L SR+IDR IRPLF   +KNE QV+  VM  +    
Sbjct: 65  KAYAAGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPNGFKNEVQVVCTVMSAEKNID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQD 183
           P + +M+  SAAL +SG+PF GPV GA+V Y + Q Y+LNP   E    +LD+ V+GT+D
Sbjct: 125 PDIAAMIGTSAALSISGIPFNGPVGGARVGYTDEQGYLLNPTYSELADSALDMVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242
           AVLMVE EA++LSED++L  ++F H E + VI  I++LA    K     +   + + L+ 
Sbjct: 185 AVLMVESEASELSEDIMLGGVLFAHQEMQSVITVIAELAAEVGKPRWDWVAEVENADLKT 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            ++ ++  DL  +    +K  R  +I+ L+    +   +E     E +I   F+ ++  +
Sbjct: 245 ALNDLVGADLDAAYQTVDKQARVVKINALRDIANAQLIAEDGPTAE-DIKDSFKKLEKSI 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++  + R+DGRD+ TVR I  +VG+L + HGSSLF RG+TQAIV  TLG+  D Q 
Sbjct: 304 VRGRIIRGEPRIDGRDTTTVRGIDVEVGILPKVHGSSLFTRGETQAIVAATLGSTRDAQM 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D+L G + + FM+HYNF P + GE  R+G  SRRE+GHGRLARR I+ VLP   +FPY 
Sbjct: 364 IDALEGRRDDPFMLHYNFPPYSVGEAGRIGFTSRREVGHGRLARRGINAVLPSPEEFPYA 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+   + +L+DI GD
Sbjct: 424 MRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDSGYAVLTDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA + RLHIL EM+KV+S  
Sbjct: 484 EDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALEQAMQARLHILGEMNKVISTG 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++ +  PR+ +M I  D+IR+VIG GG  IRG+ E+  + ++IDD G VK+ S   A 
Sbjct: 544 RDEVADTAPRMGVMQIDSDKIRDVIGKGGATIRGLCEEHNSTIDIDDSGAVKVYSEDTAG 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + AA + I +I   PE   IY+G+VV++++FGAFV+F    DGLVHISQ++ ERVAK +D
Sbjct: 604 LNAAMDAIAAIVADPEPGTIYEGKVVRIVEFGAFVNFMPGTDGLVHISQIAQERVAKVTD 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            + EG TV VK+L+ D+RG++KLS+K    + G
Sbjct: 664 YLSEGQTVRVKVLEIDNRGRVKLSIKEAQSDEG 696


>gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|226702591|sp|B0BUD5|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 715

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   +++ +VR 
Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALESSIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++     +A
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKA 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV + +D + 
Sbjct: 607 VMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLS 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G  V VK+++ D + +I+L+MK  D N   P+
Sbjct: 667 VGQEVTVKVVEIDRQNRIRLTMK--DLNNDTPV 697


>gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
 gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
          Length = 699

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/697 (49%), Positives = 477/697 (68%), Gaps = 4/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++ +VL T G   VL  VV   + K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-SVLITMGGVSVLVAVVAQPTAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+Y+LNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIAGARVGLINGEYILNPNHEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    A E   +      
Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGATESTWVAPTKND 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + ++ F  E        E+  +FE+
Sbjct: 242 ALLEQLKTAFEAKISEAYTIAVKQERYAALDALHAEAIAQFVPESDETGIADEVNELFEE 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY LR+VS+ITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVLRVVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFTGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P   ++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFAVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAANAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q++
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQSS 698


>gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
 gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
          Length = 706

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ LSED +L A++FGH++ + VIE I  L     K      + + + +L + + 
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEINVELHDRVK 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K  +V+   +E  + +E E+  +   I+  VVR+
Sbjct: 248 ALSEARLGDAYRITEKQERYAQVDTIKSDVVAALLAEDDTLDENELRDILGSIEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPYT+R+
Sbjct: 368 LIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+   + + 
Sbjct: 548 ISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASTDGEKAKY 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+I+LS+K
Sbjct: 668 MGQEVPVKVLEVDRQGRIRLSIK 690


>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
 gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
          Length = 709

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDGNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
 gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
          Length = 730

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/695 (49%), Positives = 484/695 (69%), Gaps = 11/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 18  MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 77

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKI GG+ RRE RP+E+E L SR+IDR +RPLFS+ + NE QV+I+V+  
Sbjct: 78  VDYLEKTYSAGKIAGGFFRRECRPSEHETLTSRLIDRPLRPLFSEGFYNEVQVVIHVLSV 137

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 138 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 197

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 198 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEW--DWQPAPK 255

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEI 291
            E     ++++ + DL  +  + +K  R  ++ ++     +    +       + ++  +
Sbjct: 256 NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV 315

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 316 GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 375

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 376 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 435

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 436 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 495

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHI
Sbjct: 496 KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI 555

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 556 LGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 615

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 616 VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 675

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 676 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 710


>gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
 gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
          Length = 711

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/693 (48%), Positives = 476/693 (68%), Gaps = 10/693 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+ I+ L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 NIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIDEFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
 gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
 gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           AM-19226]
 gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
 gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
 gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           AM-19226]
          Length = 708

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittGG]
 gi|187610273|sp|A5UG34|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG]
          Length = 709

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+   +V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    NEG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEINEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 711

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/687 (49%), Positives = 475/687 (69%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH++ + VI+ I+ L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVNDA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K ++ +   +E  + +  EI  +   I+  
Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATLVAEDETLDANEIGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPY
Sbjct: 364 NIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKFAIRRIEEITAEIEVGRVYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           R3021]
 gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           7P49H1]
 gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           22.4-21]
 gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           7P49H1]
          Length = 709

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
 gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
 gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
 gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
          Length = 709

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittHH]
 gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittHH]
          Length = 709

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVTIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           K90mix]
 gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           K90mix]
          Length = 695

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/690 (51%), Positives = 478/690 (69%), Gaps = 3/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H    ++    +  ETG IARQ+ GAVL    ETVVL T V  +  + G+DFFPLTVNYQ
Sbjct: 3   HKKSFQYGNHTVTFETGDIARQASGAVLVNMAETVVLVTAVARKEAEPGRDFFPLTVNYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ERTYA GKIPGG+ +RE RP E E L SR+IDR IRPLF + +KNETQ++  VM  + + 
Sbjct: 63  ERTYAAGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P + +++ ASAAL LSG+PF GP+  A+V Y  G+Y+LNP     + S LDL V+GT+ 
Sbjct: 123 DPDIPALLGASAALALSGVPFAGPIGAARVGYRAGEYLLNPTYSALEDSDLDLVVAGTEH 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           AVLMVE EA++LSE+ +L A++FGH + +  I+AI +LA    K      +    + LE+
Sbjct: 183 AVLMVESEASELSEEAMLGAVMFGHEQMQAAIQAIKELAAEAGKPAWDWQAPPSEASLED 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAK 301
            + + +  DL  +  I EK  R ++I +L+ + V   +SE  S    E V + F D++ +
Sbjct: 243 RVKEAVGSDLVEAYQIAEKQARTQRISELRSQAVEAIASEDESGPSAEDVKTAFHDLEYR 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD   R+DGRD++TVR IS Q  +L RTHGS++F RG+TQA+VV TLGT  D Q
Sbjct: 303 LVRDRILDGNPRIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D++ G +R+ FM+HYNF P  TGE   +G+P RREIGHGRLA+R +  V+P+  +FPY
Sbjct: 363 VIDAIEGERRDRFMLHYNFPPYCTGETGFVGSPKRREIGHGRLAKRGVAAVMPKAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGL+K+GD F +LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM  AL QA+ GR+HIL  M++VL  
Sbjct: 483 DEDHLGDMDFKVAGTTNGVTALQMDIKIDGITREIMEQALAQAREGRMHILGCMNEVLPS 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++    PR   M I PD+IR+VIG GG  IR + E+TGA ++I DDGTVK+AS+  A
Sbjct: 543 HREEMSSHAPRFITMKINPDKIRDVIGKGGATIRALTEETGATIDIQDDGTVKVASTDQA 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A+  I  +T   EV + Y G+V K+MDFGAFV     RDGLVHISQ+S ERV   +
Sbjct: 603 AGLEAKRRIEELTADIEVGRQYTGKVAKIMDFGAFVSILPGRDGLVHISQISDERVENVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           D + EGD+V VK+L+ D +G+I+LSMK V+
Sbjct: 663 DFLSEGDSVTVKVLEVDKQGRIRLSMKAVE 692


>gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
 gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
 gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           12129(1)]
 gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
 gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
 gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           12129(1)]
 gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
           11079-80]
          Length = 709

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittII]
 gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittII]
 gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           10810]
 gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866]
          Length = 709

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
 gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395]
 gi|187611333|sp|A5F913|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
 gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
 gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
          Length = 712

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISSEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           vietnamiensis G4]
 gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
          Length = 715

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/699 (48%), Positives = 487/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ + S LDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     D +   K
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEW--DWQPAPK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-----YFSSEHSSWNEGEI 291
            E     ++++   DL  +  + +K  R  ++ ++     +       ++   + ++  +
Sbjct: 241 NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            ++  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV
Sbjct: 301 GNILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+
Sbjct: 421 CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HI
Sbjct: 481 KFAVLTDILGDEDHLGDMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG
Sbjct: 541 LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+
Sbjct: 601 VVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 661 IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 712

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/687 (49%), Positives = 474/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH++ + VI+ I++L K   K     +P   +      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAANDA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKDETIATLVAEDETLDANELSEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 IIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDADKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           202]
 gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           202]
          Length = 711

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/690 (48%), Positives = 478/690 (69%), Gaps = 16/690 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--------EPIVIDSKDFS 238
           MVE EA+ L+E+ +L A++FGH + + VIE I +  K   K        EP   ++   +
Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEP---NTDLIN 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           K++      I +  R++    EK  R +QID +K ++++  ++E  + +EG+I+ +   +
Sbjct: 244 KVKALAEARIGDAYRIT----EKQARYEQIDAIKAEVIATLTAEDETVSEGKIIDIITAL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++++VR+ ++  + R+DGR  +TVR +    G+L RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 300 ESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTER 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +
Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + 
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R ++ +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA++
Sbjct: 540 IPAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAT 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                +   E I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++  RV 
Sbjct: 600 DNNAAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + +D +  G  V VK+++ D +G+I+L+MK
Sbjct: 660 RVTDYLSVGQEVQVKVVEIDRQGRIRLTMK 689


>gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp.
           PRwf-1]
 gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           PRwf-1]
          Length = 704

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/703 (49%), Positives = 478/703 (67%), Gaps = 17/703 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  + E ++    + +ETGRIARQ++ +VL   G   VL  VV     K+GQ+FFPLT
Sbjct: 3   MFNTISREFQYGNEQVVIETGRIARQAN-SVLVHMGGVSVLVAVVVKSDAKEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE RPTE E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +    + +M+ ASAAL +S  PF GP+ GA+V +ING+YVLNP ++E + S LDL V+
Sbjct: 122 DKKHYADIAAMIGASAALSISDAPFNGPIGGARVGFINGEYVLNPSIEELKSSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I++LAK    +      +DF  
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIAELAKAVGTQ-----KQDFVA 236

Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEG 289
               ++L+E+++    E +  +  I +K  R +++D++K   +   +    SE  +  E 
Sbjct: 237 PELNAELKEKVTTQFGEQVAEAYAISDKQARYEKLDEIKAAAIDALAGDPESEEFAEKEA 296

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           +I  ++ D++ + VR  +L  K R+DGRD +TVR +  QVG+L  THGS+LF RG+TQA+
Sbjct: 297 QIKEIYNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQAL 356

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V  TLG   D   +DSL+GT ++ FM+HYNF   + GE  R G P RREIGHGRLARR +
Sbjct: 357 VTTTLGNSRDVNLIDSLAGTIQDHFMLHYNFPHYSVGETGREGVPKRREIGHGRLARRGV 416

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             +LP + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+
Sbjct: 417 QAMLPDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKE 476

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD F +LSDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI+ +IM  AL+QA  GR+
Sbjct: 477 GDRFAVLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITSDIMEKALEQAHAGRI 536

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HILN M++VL  SR ++    P   ++ I  D+IR+VIG GG  IR + E TGA ++IDD
Sbjct: 537 HILNAMNEVLPASRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVIDIDD 596

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +GT++I   + A  + A   I +IT   EV K+YKG V +V+DFGAFV      DGLVHI
Sbjct: 597 NGTIRIFGENKAATKEAIRQIEAITAEVEVGKVYKGTVARVVDFGAFVTVLPGTDGLVHI 656

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQ++ ERV   SD + EG  + V + D D+RG+IKL+MK V+Q
Sbjct: 657 SQIADERVESVSDYLSEGQQINVLVQDVDNRGRIKLTMKGVEQ 699


>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 722

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/697 (49%), Positives = 488/697 (70%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VA+SAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVASSAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI  L +   K      +   ++
Sbjct: 181 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K +    ++     +  E+ ++  ++
Sbjct: 241 ALFAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAEKLAAAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +LD + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILDGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+LSG  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALSGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|212634079|ref|YP_002310604.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           piezotolerans WP3]
 gi|226702687|sp|B8CKH8|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans
           WP3]
          Length = 701

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/689 (50%), Positives = 477/689 (69%), Gaps = 18/689 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E+    + LETG IARQ+D AVLA+ G+T VL TVV  ++ + G+DFFPLTVNYQE+TY
Sbjct: 8   FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D E +P +
Sbjct: 68  AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +SM+  SAAL +SGLPF GP+  A+V Y NG+YVLNP + +   S LDL V+GT+ AVLM
Sbjct: 128 ISMIGTSAALAISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELDLVVAGTEGAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLE 241
           VE EA  L E+V+L  +++GH + + VI AIS+L K  A +P       V D +  +K++
Sbjct: 188 VESEAASLPEEVMLGGVVYGHEQQQVVINAISEL-KAEASKPAWDWTAPVQDQELVAKIK 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +     + E  ++      K  R  Q+  +K        +E+   +  EI  +   ++ K
Sbjct: 247 DLAEAGLTEAYQIEV----KQDRYTQVGVIKSAAKEALLAENPEADLREIDGLLGSLEKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ ++    R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLGT  D Q
Sbjct: 303 VVRSRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            VDS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY
Sbjct: 363 KVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI G
Sbjct: 423 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI+++IM +ALQQA   R+HILN M + +  
Sbjct: 483 DEDHLGDMDFKVAGTRDGITALQMDIKIEGITKDIMQIALQQAYGARVHILNVMDQAIGS 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIASS+  
Sbjct: 543 HREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSNG- 601

Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             EA +E IR I ++    EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA
Sbjct: 602 --EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             SD ++ G  V VK+++ D +G+++LSM
Sbjct: 660 NVSDYLEVGQEVKVKVMEVDRQGRVRLSM 688


>gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           R3021]
 gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           R3021]
          Length = 709

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846]
          Length = 709

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIIAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
 gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
          Length = 708

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++   +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAAQAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 712

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/687 (49%), Positives = 473/687 (68%), Gaps = 6/687 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE Q+I  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVAGTESAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  L+ED +L A++FGH + + VIE I+ LA    KE      +  ++ L + ++
Sbjct: 188 MVESEAELLTEDQMLGAVVFGHEQQQIVIENINSLAAEAGKEKWDWAPEPINQSLHDRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIVSVFEDIQAK 301
           ++ +  L  +  I EK  R  Q++ +K+++     +E +       EGE++     ++  
Sbjct: 248 ELAESRLGDAYRITEKQERYAQVNIIKEEVSVVILAESAEKGVELEEGEVLDALSGLEKN 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L  + R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT  D Q
Sbjct: 308 VVRGRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQ 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 368 VIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNASEFPY 427

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 428 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 487

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +  
Sbjct: 488 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQAIES 547

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 548 PRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 607

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +   A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 608 KARHAISRIEEITAEVEVGRIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 667

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+I+LSMK
Sbjct: 668 DYLQVGQEVPVKVLEIDRQGRIRLSMK 694


>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
 gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
          Length = 722

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/683 (48%), Positives = 479/683 (70%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG IARQ+  AV+    +T V  T V  + +K+GQDFFPLTVNYQER+
Sbjct: 23  KFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERS 82

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I  V+  + + +P 
Sbjct: 83  YAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPD 142

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE + S LDL V+GT+ AVL
Sbjct: 143 IVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLDLVVAGTESAVL 202

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH++ + VI+ I++L K   KE      +  ++ L ++++
Sbjct: 203 MVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQPEPVNQALRDKVA 262

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  +  +  I EK  R +Q+D +K+++ +   +E  + +  E+  +  +++ +VVR+
Sbjct: 263 ALAESRMGDAYRITEKQERYEQVDLIKEEVTAAIVAEDENVDVAEVADILANLEKQVVRS 322

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR+ + VR +  +  +L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 323 RVIRGEPRIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQ 382

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G   + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A FPYT+R+
Sbjct: 383 LMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPDHADFPYTVRV 442

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDH
Sbjct: 443 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSDILGDEDH 502

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++  R  
Sbjct: 503 LGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINSPRDD 562

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 563 ISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLKAKE 622

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 623 AIRRIEEITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 682

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+I+LSMK
Sbjct: 683 MGQEVPVKVLEIDRQGRIRLSMK 705


>gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++ L   ++
Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNEALNARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+
Sbjct: 248 ALAEARLSDAYRITDKQERYAQVDVIKSETIAALVAEDETLDENELGEILHAIEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMDKFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  
Sbjct: 488 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 548 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690


>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           ATCC 23344]
 gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           SAVP1]
 gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10229]
 gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10247]
 gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
 gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           SAVP1]
 gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
          Length = 713

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/701 (48%), Positives = 485/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W  + ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289
                L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++ 
Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           6P18H1]
 gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           6P18H1]
          Length = 709

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E L++R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
          Length = 696

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/681 (49%), Positives = 471/681 (69%), Gaps = 14/681 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG
Sbjct: 1   MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ AS
Sbjct: 61  SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQM 247
           LSED +L A++FGH + + VI+ I++L K   K       EP+         L   ++ +
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAAL 234

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +
Sbjct: 235 AEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 294

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L 
Sbjct: 295 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 354

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R++  V+P   +FPYT+R+VS
Sbjct: 355 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVS 414

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG
Sbjct: 415 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 474

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + 
Sbjct: 475 DMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 534

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A 
Sbjct: 535 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 594

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
             I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G
Sbjct: 595 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 654

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V VK+L+ D +G+I+LS+K
Sbjct: 655 QEVPVKVLEVDRQGRIRLSIK 675


>gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum
           STM815]
 gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum
           STM815]
          Length = 712

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/702 (49%), Positives = 486/702 (69%), Gaps = 17/702 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVVKEFKWGQHTVRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+VM  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   + +GS LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     + +   K
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKAEW--EWQAAPK 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----------NE 288
            E  +S++   ++  +  +     R KQ    K K V Y +++               ++
Sbjct: 241 NEALISRV--NEIAYNELLSAYQTRDKQARSTKLKEV-YAATQAKLEEEAAAAGTVAADK 297

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             + +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA
Sbjct: 298 ASVGNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 357

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +VV TLGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA
Sbjct: 358 LVVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 417

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ 
Sbjct: 418 LAACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIL 477

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR
Sbjct: 478 EGNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGR 537

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HIL +M+  +S    +L  + PR+  + I P++IR+VIG GG VIR + E+TG  ++I 
Sbjct: 538 MHILGKMTSAVSGVNTELSAYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDIS 597

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDG V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+H
Sbjct: 598 DDGVVTIASTSSEGMAEAKKRIENITAEVEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLH 657

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           IS+++ ER+   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 658 ISEIANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 715

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 487/697 (69%), Gaps = 15/697 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289
              +++ E    + + +L  +  I +K  R  ++ ++      K      ++   + ++ 
Sbjct: 243 ALIARVTE----IAQPELLAAYQIRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           S++  ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|257096720|sp|B7LR33|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
          Length = 711

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
 gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
          Length = 712

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/688 (50%), Positives = 483/688 (70%), Gaps = 6/688 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLKDGQDFFPLTVNYQERT 67
           +++    + LETG+IARQ+  +VL + G   VL TVV + R   + +DFFPLTV YQERT
Sbjct: 17  VQFGSEEIILETGKIARQATASVLVSVGGVTVLVTVVGNKRQTDENRDFFPLTVQYQERT 76

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGGY +RE RP+E EIL SR+IDR IRPLF + + NE QV+  V+    + +P 
Sbjct: 77  YAAGRIPGGYFKREGRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVLSSTPDINPD 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +++ ASAAL LSGLPF+ P+   +V Y +GQY+LNP + E + S LDL V+ T+ AVL
Sbjct: 137 IPALIGASAALALSGLPFKEPIAAVRVGYADGQYILNPSMKELETSDLDLVVAATEKAVL 196

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKDFSKLEEE 243
           MVE +A +LSE+++L AI+FGH + + VI++I +LA   +K    I    S D + +E+ 
Sbjct: 197 MVESQAAELSEEIMLKAILFGHQQMQGVIQSIKELAIEASKPAWDIKTLVSMD-AHVEQA 255

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           + Q I   L  +  IPEK++R  ++D++++  ++ +  E        I  V E  + K+V
Sbjct: 256 IIQSIDTSLTEAYQIPEKFMRKFKLDEIRENTMAQWLDEEKGITAKAIQFVLEKREEKIV 315

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L  + R+DGRD + VR I+ + G L RTHGS+LF RG+TQA+VV TLGT  D Q V
Sbjct: 316 RSRILSGQSRIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDAQTV 375

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           ++L G  R  FM+HYNF P + GE  ++G+P RREIGHG LA+RA+  VLP  + FPY L
Sbjct: 376 EALDGEGRETFMLHYNFPPYSVGETGQIGSPKRREIGHGNLAKRALRAVLPSESDFPYVL 435

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMATVCG+S+ALMDAGVP+ K VAGIAMGL+K+G+ F +L+DI GDE
Sbjct: 436 RVVSEITESNGSSSMATVCGASVALMDAGVPLKKHVAGIAMGLIKEGEQFAVLTDILGDE 495

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  G+TA+QMD+KI GI+E I+ +AL QA+ GRLHIL+ M + L+E R
Sbjct: 496 DHLGDMDFKVAGTVDGVTALQMDIKIEGITEEILKVALNQAREGRLHILSIMKEALAEPR 555

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           +++  + PR+  + I P++IR++IG GG  IR I E+TG  ++I DDG V+I++S     
Sbjct: 556 IEVSPYAPRITTLKINPEKIRDLIGKGGATIRAITEETGTLIDISDDGMVRISTSDSQAC 615

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A E IR +T   EV  IY+G +VK+ DFGAFV+    RDGLVHISQ+S ERV + SDV
Sbjct: 616 QNAIERIRKVTAEVEVGCIYEGAIVKLTDFGAFVNVLPGRDGLVHISQISKERVEQVSDV 675

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           + EG  V VK+L+ D +G+I+L+MK ++
Sbjct: 676 LSEGQIVKVKVLEIDRQGRIRLTMKDIE 703


>gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1357]
          Length = 696

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/681 (49%), Positives = 470/681 (69%), Gaps = 14/681 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG
Sbjct: 1   MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ AS
Sbjct: 61  SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQM 247
           LSED +L A++FGH + + VI+ I++L K   K       EP+         L   ++ +
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAAL 234

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +
Sbjct: 235 AEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 294

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L 
Sbjct: 295 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 354

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VS
Sbjct: 355 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 414

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG
Sbjct: 415 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 474

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + 
Sbjct: 475 DMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 534

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A 
Sbjct: 535 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 594

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
             I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G
Sbjct: 595 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 654

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V VK+L+ D +G+I+LS+K
Sbjct: 655 QEVPVKVLEVDRQGRIRLSIK 675


>gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana
           ATCC 700345]
 gi|257096708|sp|A8H735|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 704

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/695 (50%), Positives = 475/695 (68%), Gaps = 32/695 (4%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           ++    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 12  QYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVII V+  D E SP V+
Sbjct: 72  AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V Y+NG+Y+LNP + +   S L+L V+GT+ AVLMV
Sbjct: 132 SMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGTESAVLMV 191

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----------EPIVIDSKDF 237
           E EA+ L E+V+L A+++GH++ + VI+AI +L     K           E +V   KD 
Sbjct: 192 ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWSAPAQDETLVAKIKDL 251

Query: 238 SK--LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           ++  L E     +K+D            R  Q+  +K        +E+   N  EI  + 
Sbjct: 252 AEAGLTEAYQIEVKQD------------RYAQVGVVKNAAKEALLAENPDANTREIDGLL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             ++ KVVR  ++  + R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLG
Sbjct: 300 GSLEKKVVRGRIISGQPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +DS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P 
Sbjct: 360 TERDAQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPT 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY++RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++
Sbjct: 420 AEEFPYSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QA   R+HIL+ M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALKQAYGARVHILDVM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +S  R  + E  PR+  + I P++IR+VIG GG  IR + E+TG  + +DDDGTVKI
Sbjct: 540 DRAISGHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKI 599

Query: 596 ASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           ASS+    EA +E IR I ++    EV  +Y G+VV+++DFGAFV     +DGLVHISQ+
Sbjct: 600 ASSNG---EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQI 656

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           + ERVA  SD ++ G  V VK+++ D +G+++LSM
Sbjct: 657 AEERVANVSDYLEVGQEVKVKVMEVDRQGRVRLSM 691


>gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
           parainfluenzae T3T1]
          Length = 712

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/685 (49%), Positives = 475/685 (69%), Gaps = 6/685 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LE G IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+  SAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGTSAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS--SSLAEI 603
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  SS A+ 
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVDSSAAKN 606

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             AR  I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD 
Sbjct: 607 VMAR--IEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++ G  V VK+++ D +G+I+L+MK
Sbjct: 665 LQVGQEVTVKVVEIDRQGRIRLTMK 689


>gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
 gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
           B253]
 gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
          Length = 721

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 18  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 198 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 251

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 252 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 311

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 312 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 371

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 372 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 431

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 432 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 491

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 492 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 551

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 552 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 611

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 612 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 671

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 672 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 700


>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 700

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/687 (50%), Positives = 467/687 (67%), Gaps = 3/687 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  VE+E AGR ++LETGR+A+ +DGAVLA+YG+T+VLAT V  + LK   DF PLTVNY
Sbjct: 2   VQAVEVEIAGRTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ Y+ GKIPGGY +RE  P+E E L SR+IDR IRPL  K +  ETQVI +V+  D  
Sbjct: 62  LEKAYSAGKIPGGYFKREGAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQS 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            +  VV + AASAAL +S +PF GP+ G ++  +NGQ+V+NP + E Q S L+L V+GT+
Sbjct: 122 MTSEVVGITAASAALAISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSELELVVAGTE 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+ MVE  AN LSE V LDA+   H+E K ++  I +L  M  +   V+  +   + LE
Sbjct: 182 DAIQMVESGANGLSESVFLDALALAHSEIKKIVAKIVELQAMVGRTKRVVPVEPVGEELE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++ +++   +R +  I  K  R ++ D +    V     E  + +  ++  V+ D++  
Sbjct: 242 RQVRELVAGPIREAVLIANKNDRQERFDQIMADAVDKLGEEDPARSR-QVKEVYHDVEYH 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+KKVR DGR +  +R I+ +  +L RTHGS+LF RG+TQ++ VVTLGT +DEQ
Sbjct: 301 EVREMILEKKVRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G    +FM+HYNF P + GE   + +P RRE+GHG+LA RA+  VLP    FPY
Sbjct: 361 RIDALEGEYFRNFMLHYNFPPFSVGEARPLRSPGRREVGHGKLAERALKSVLPDKEAFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+I ES+GSSSMATVCG +LA+MDAGVPI KPVAGIAMGL+KDGD  +ILSDI G
Sbjct: 421 TIRIVSDILESNGSSSMATVCGGTLAMMDAGVPIKKPVAGIAMGLIKDGDRVLILSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKV GT  GITA+QMD+KI GI+ ++M  AL+QA+ GR+HIL +M + LS 
Sbjct: 481 LEDHLGDMDFKVTGTQEGITALQMDIKIEGITIDLMRQALEQARAGRIHILEKMQESLSS 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L    PR+  + I  D+IR+VIG GGKVIRGI+ + G KVN+DD G V IAS   A
Sbjct: 541 PRDSLAPHAPRIYTLQIKTDKIRDVIGPGGKVIRGIIAECGVKVNVDDSGLVTIASVDEA 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +M+  +T+   V KIY G V K++DFGAFV      DGLVHISQL+  RV   +
Sbjct: 601 SAQQAIDMVNRLTEEAIVGKIYMGTVRKIVDFGAFVEILPNVDGLVHISQLAEHRVQSVA 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D + EG+ V VK+L+ D +GKI+LS K
Sbjct: 661 DELAEGEQVLVKVLEIDRQGKIRLSRK 687


>gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
          Length = 713

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/701 (48%), Positives = 489/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKTSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 181 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289
              +++ E    + + +L  +  I +K  R  ++ ++      K   +  ++   + ++ 
Sbjct: 241 ALIARVTE----LAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEAALAAGTVAADKA 296

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 297 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 356

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 357 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 416

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 417 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 476

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 477 GNKFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 536

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M+  ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 537 HILGKMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 596

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 597 DGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 656

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 657 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 697


>gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           YJ016]
 gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016]
          Length = 725

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/694 (49%), Positives = 479/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 18  MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPL 77

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + + NE QVI  V+ 
Sbjct: 78  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVS 137

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 138 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVV 197

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A   A      +  +  
Sbjct: 198 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEAN 257

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L E+++ + +  L  +  I EK  R  +I ++  ++ +   +E    +  EI ++F D
Sbjct: 258 TALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHD 317

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 318 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 377

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 378 RDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSID 437

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 438 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 497

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 498 DILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQ 557

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 558 AISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 617

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV  IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 618 TEGA---AAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 674

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 675 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 708


>gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5
           str. 8401]
 gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
 gi|123342480|sp|Q0T0B7|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611324|sp|Q83JG0|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str.
           8401]
 gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
 gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           EPECa14]
 gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
 gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1180]
 gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
           4343-70]
 gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
 gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
           2747-71]
 gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71]
 gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
 gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
 gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
 gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
 gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
          Length = 711

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittEE]
 gi|187610272|sp|A5UAQ6|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittEE]
          Length = 709

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L +++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADVLTEEQMLASVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           Rd KW20]
 gi|1172546|sp|P44584|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20]
          Length = 709

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEXSEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei K96243]
 gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1710b]
 gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 668]
 gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1106a]
 gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei DM98]
 gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 14]
 gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 91]
 gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 9]
 gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei B7210]
 gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 7894]
 gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 112]
 gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei BCC215]
 gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 668]
 gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 713

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/701 (48%), Positives = 484/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289
                L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++ 
Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|254696416|ref|ZP_05158244.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260760788|ref|ZP_05873131.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260671220|gb|EEX58041.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 528

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/528 (62%), Positives = 413/528 (78%), Gaps = 4/528 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F     E +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QA
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQA 528


>gi|119470827|ref|ZP_01613438.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Alteromonadales bacterium TW-7]
 gi|119446054|gb|EAW27333.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Alteromonadales bacterium TW-7]
          Length = 708

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/688 (50%), Positives = 473/688 (68%), Gaps = 9/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQER 
Sbjct: 7   EFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQERM 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E  P 
Sbjct: 67  YAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+  SAAL +SG+PF GP+  A+V YI G+YVLNP L E ++  LDL V+GT +AVL
Sbjct: 127 MVAMIGTSAALAISGIPFSGPIGAARVGYIGGEYVLNPTLKELEESQLDLVVAGTDNAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEE 243
           MVE EA+ L+EDV+L A+++GH + + +I AI++  K  A +P        K+ S LEE+
Sbjct: 187 MVESEADVLAEDVMLGAVVYGHEQSQSIINAINEF-KAEAGKPTWDWTAPEKNVS-LEEK 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQA 300
           ++++  + +  +  I +K  R + +   K  ++   SSE +   + ++ E+  VF  ++ 
Sbjct: 245 VAELAADKVGEAYRITDKVARKEALGVAKDAVIEALSSELAEGETLDKQEVGKVFGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D 
Sbjct: 305 KIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDS 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P    FP
Sbjct: 365 QLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTLTDFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ + F++LSDI 
Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +S
Sbjct: 485 GDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAIS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
               +L  F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++  
Sbjct: 545 APSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATDG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV   
Sbjct: 605 ESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D + EG  V VK+L+ D +G+++LS+K
Sbjct: 665 ADHLSEGQEVKVKVLEVDRQGRVRLSIK 692


>gi|187611310|sp|Q31W43|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
           796-83]
          Length = 711

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 474/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R++  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius
           str. 'morsitans']
 gi|123725447|sp|Q2NW19|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius
           str. 'morsitans']
          Length = 705

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 470/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++      LETG +ARQ+  AV+A+  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTFTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE  VI  V+  + + SP 
Sbjct: 68  YAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSVNPQVSPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP   E   S LDL V+GTQ+AVL
Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDLVVAGTQNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  LSED +L A+++GH++ + VI+ I++L     K      ++D +  L+  ++
Sbjct: 188 MVESEAQLLSEDQMLGAVVYGHDQQQIVIDNINQLVAEAGKPKWQWQAQDVNAGLQARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  S  I EK  R   +D +K  +V   + +  + + GEI  +   ++  VVR+
Sbjct: 248 ELAESRLGDSYRITEKQERYAAVDAIKADVVEALTGQDETLDVGEIKDILGALEKSVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNASEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGVTALQMDIKIEGITHEIMQVALNQAKGARMHILGVMERAISSPRGN 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVK+A++   +   
Sbjct: 548 ISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKVAATDGDKARH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAF    G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYNGKVTRIVDFGAFFAIGGGKEGLVHISQIADKRVEKVADYLE 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 LGQEVPVKVLEVDRQGRVRLSIK 690


>gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E110019]
 gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E110019]
          Length = 711

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKKAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS]
 gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
 gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BW2952]
 gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038330|ref|ZP_04872388.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
 gi|256024260|ref|ZP_05438125.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           4_1_40B]
 gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50]
 gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           196-1]
 gi|307139851|ref|ZP_07499207.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli H736]
 gi|1172545|sp|P05055|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610300|sp|A8A4Y0|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096729|sp|B1XGX6|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|259534118|sp|C4ZSQ5|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS]
 gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
 gi|226839954|gb|EEH71975.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
 gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BW2952]
 gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
 gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           196-1]
 gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
           phosphorylase and degradosome [Escherichia coli
           BL21(DE3)]
 gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
 gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
 gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
 gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
 gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
          Length = 711

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           2362-75]
 gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           2362-75]
          Length = 711

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           SMS-3-5]
 gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
 gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           3_2_53FAA]
 gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           FVEC1412]
 gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           FVEC1302]
 gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
 gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
 gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
 gi|187610330|sp|A1AG69|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610331|sp|Q0TCU5|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610332|sp|Q8FD87|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610333|sp|Q1R6H4|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702650|sp|B1LFR6|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096724|sp|B7MB85|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096727|sp|B7N0U9|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096730|sp|B7NDF0|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           SMS-3-5]
 gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
 gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
 gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           3_2_53FAA]
 gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           FVEC1412]
 gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           IHE3034]
 gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           FVEC1302]
 gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
 gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
 gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           WV_060327]
 gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           RN587/1]
 gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
 gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
 gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
 gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           TW10509]
 gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           STEC_7v]
 gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
 gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
          Length = 711

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC
           BAA-895]
 gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895]
          Length = 722

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 19  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 78

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 79  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 138

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 139 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 198

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++ L   ++
Sbjct: 199 MVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNEALNARVA 258

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+
Sbjct: 259 ALAEARLSDAYRITDKQERYAQVDVIKSETIAALVAEDETLDENELGEILHAIEKNVVRS 318

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 319 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 378

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 379 LMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMDKFPYTVRV 438

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 439 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 498

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  
Sbjct: 499 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 558

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 559 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 618

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 619 AIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 678

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 679 MGQEVPVKVLEVDRQGRVRLSIK 701


>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
 gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
          Length = 709

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I+++IG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GL+HISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
          Length = 711

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           E24377A]
 gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
 gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
 gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
 gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1012]
 gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209397723|ref|YP_002272635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256018916|ref|ZP_05432781.1| polynucleotide phosphorylase/polyadenylase [Shigella sp. D9]
 gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
 gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
 gi|187610299|sp|A7ZS61|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610334|sp|Q8X9M3|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611306|sp|Q3YX77|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702649|sp|B5YS54|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096725|sp|B7LH99|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096726|sp|B7NKN3|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096731|sp|B6I1N9|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E24377A]
 gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
 gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
 gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
 gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1012]
 gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. TW14359]
 gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
 gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
 gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
 gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
           9905]
 gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           EC4100B]
 gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. G5101]
 gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H- str. 493-89]
 gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H- str. H 2687]
 gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E128010]
 gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
 gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11]
 gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
 gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
 gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
 gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. 1044]
          Length = 711

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           RdAW]
 gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           RdAW]
          Length = 709

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 473/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
 gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
          Length = 734

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVLVKVLEVDRQGRIRLSIK 713


>gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
 gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
          Length = 707

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/694 (49%), Positives = 472/694 (68%), Gaps = 10/694 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLNPTIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GTQ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L     K     +P  +++
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNA 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           +    L   ++ + +  L  +  I EK  R  QI+ +K  +V    +E  S + GEI  +
Sbjct: 241 E----LHARVAALSESRLGDAYLITEKQERYNQINVIKADVVQALQAEDESLDAGEISDI 296

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
              I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TL
Sbjct: 297 LGSIEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P
Sbjct: 357 GTARDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMP 416

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +   FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+ FI
Sbjct: 417 KPEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGESFI 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +S  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVK
Sbjct: 537 MEQAISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA++   + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ 
Sbjct: 597 IAATDGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 695

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 1   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  +  LDL V+
Sbjct: 120 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    A E   I      
Sbjct: 180 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWIAPTKNE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 240 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 300 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 360 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 420 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 540 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 600 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 660 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 694


>gi|254521573|ref|ZP_05133628.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
           SKA14]
 gi|219719164|gb|EED37689.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
           SKA14]
          Length = 702

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/696 (51%), Positives = 481/696 (69%), Gaps = 12/696 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPDVD 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E   S L+L V+GT +A
Sbjct: 125 GDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTSNA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FSK 239
           VLMVE EA  LSE+V+L A+ FGH E + VI AI++L      +P   ++        S 
Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALISA 244

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           L+E +   + E  +V     +K  R   I  +KK +V   +   ++  WN  E+   F +
Sbjct: 245 LKEAIGPRLGEAFQVR----DKLQRRDAISAIKKDVVETLAGRVAAEGWNPAELSKEFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + +R  +LD KVR+DGR  +TVR I+ + G+L RTHGSSLF RG+TQAIV +TLGT 
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+++G  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P   
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LS
Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GI+A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS
Sbjct: 541 GLTAPRSELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S++RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K  DV+KEGD V VK+L+ D +G+I+LSMK V++ 
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEG 696


>gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           CMCP6]
 gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6]
 gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 708

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/694 (49%), Positives = 479/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A   A      +  +  
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L E+++ + +  L  +  I EK  R  +I ++  ++ +   +E    +  EI ++F D
Sbjct: 241 TALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSID 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV  IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIAD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227]
 gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227]
          Length = 734

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 474/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R++  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
          Length = 711

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           CFT073]
 gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UTI89]
 gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073]
 gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89]
          Length = 740

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 37  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 96

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 97  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 156

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 157 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 216

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 217 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 270

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 271 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 330

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 331 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 390

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 391 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 450

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 451 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 510

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 511 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 570

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 571 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 630

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 631 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 690

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 691 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 719


>gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
          Length = 723

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 14  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 73

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 74  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 134 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 194 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 247

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 248 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 307

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 308 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 367

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 368 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 427

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 428 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 487

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 488 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 547

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 548 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 607

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 608 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 667

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 668 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 696


>gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
           5369-93]
 gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
           5369-93]
          Length = 708

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + E   V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTESQEVQVKVLEIDRQGRVRLSMK 691


>gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
 gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
          Length = 711

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDDTLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
 gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
          Length = 714

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/683 (48%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 12  QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 71

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 72  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 131

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 132 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 191

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + L  ++ 
Sbjct: 192 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKVK 251

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 252 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 311

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 312 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 371

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 372 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRV 431

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 432 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDILGDEDH 491

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 492 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 551

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I+++IG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 552 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 611

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GL+HISQ++ ERV K SD ++
Sbjct: 612 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDYLQ 671

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 672 VGQEVNVKVVEIDRQGRIRLTMK 694


>gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           NT127]
 gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           NT127]
          Length = 709

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEAI +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFTKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEGISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
 gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
          Length = 740

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 37  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 96

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 97  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 156

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 157 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 216

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 217 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 270

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 271 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 330

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 331 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 390

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 391 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 450

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 451 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 510

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 511 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 570

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 571 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 630

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 631 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 690

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 691 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 719


>gi|257096728|sp|B7M072|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
           naphthalenivorans CJ2]
 gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
          Length = 703

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/703 (49%), Positives = 484/703 (68%), Gaps = 24/703 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG +ARQ+ GAVL     TVVLATVV     K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A+SAAL +SG+PF GP+  A+V YING+YVLNP   + Q S +DL V+
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L AI+FGH +    I AI +L +   K   V D K  +K
Sbjct: 183 GTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKP--VWDWKAPAK 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN------EG---- 289
            E  +++++           EK V   QI +  K+  ++ + + ++W       EG    
Sbjct: 241 DEVLIAKVV-------ALAEEKLVAAYQIRN--KQARTHATRQVTTWTKMGLKAEGVEFD 291

Query: 290 --EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              +  +  DI+AK+VR+ +L    R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQ
Sbjct: 292 GVAVEGMLFDIEAKIVRSQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQ 351

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           A+VV TLGT  D Q +D+LSG   + FM+HYN  P ATGE  R+G+P RREIGHGRLA+R
Sbjct: 352 ALVVTTLGTERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKR 411

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP   +FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+
Sbjct: 412 ALIAVLPSKEEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLI 471

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+ + F +L+DI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  
Sbjct: 472 KEDNRFAVLTDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEA 531

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+HIL +M + + ++  ++ +F PR+ +M I P++IR+VIG GG VIR + E+TG ++NI
Sbjct: 532 RMHILGKMQEAMGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINI 591

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           ++DGT+ IAS+  A+ + A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+
Sbjct: 592 EEDGTITIASNDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLMPGKDGLL 651

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           HISQ++ ERV K +D + EG  + VK+L+ D++G++KLSMK +
Sbjct: 652 HISQIAHERVEKVTDYLSEGQIIKVKVLETDEKGRVKLSMKAL 694


>gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 717

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/702 (50%), Positives = 481/702 (68%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVSKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR +RPLF + Y NE Q+II+V+  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPVRPLFPEGYMNEVQIIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GPV  A+V YINGQYVLNP   + + S LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGVPFSGPVGAARVGYINGQYVLNPTTTQLKSSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH + K VI+AI +L +   K  I    +    
Sbjct: 181 GTEAAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHELVRDGGKPEIEWAPAAKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++   +  LR +    +K  R  ++     +++    +E +S      +  ++ +
Sbjct: 241 ALISRVAHFGEAKLRDAYQTKDKQARTAKLKTATSEVMEALKAEAASIAGVAPDSADVNN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAAL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+KDG  F
Sbjct: 421 PPVEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK GRLHIL+
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTAKGITALQMDIKIQGITKEIMQVALAQAKEGRLHILD 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +     +L  F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G V
Sbjct: 541 KMQQAVPIGHTELSNFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   +    A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDASAGLEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            ERV   +D +KEG  V VK+L+ DDRG++KLSMK      G
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAASEEG 702


>gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
           ATCC 35469]
 gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
           ATCC 35469]
          Length = 734

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
           ATCC 25976]
 gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
           ATCC 25976]
          Length = 707

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/695 (48%), Positives = 481/695 (69%), Gaps = 9/695 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAVGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A++ +IN Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  +  +  I EK  R +QID +K  +++  +++  + +EG IV +   +++ VVR 
Sbjct: 247 ALAEARIGDAYRITEKQARYEQIDVIKADVIAQLTAQDETISEGAIVDIITALESSVVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RILAGEPRIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +  +   
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMGQAIP-APAD 545

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++   +  A
Sbjct: 546 ISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT---DNNA 602

Query: 606 AREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           A+ ++  I D+    EVN IYKG+V++V+DFGAFV   G ++GLVHISQ++ ERV + +D
Sbjct: 603 AKTVMARIEDIVAEVEVNAIYKGKVIRVVDFGAFVSILGGKEGLVHISQITNERVERVAD 662

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +  G  V VK+++ D + +I+L+MK ++ +   P
Sbjct: 663 YLNVGQEVAVKVVEIDRQNRIRLTMKDINNDAATP 697


>gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           UMN026]
 gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           198-1]
 gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           69-1]
 gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
 gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           UMN026]
 gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
 gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           198-1]
 gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           69-1]
 gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
          Length = 734

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
           z3032]
 gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
           z3032]
          Length = 711

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/696 (48%), Positives = 476/696 (68%), Gaps = 13/696 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT+NYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKASKLDLVVAGTESAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+ I+ L K   K     +P   +      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298
             +  + +  L  +  I +K  R  QID +K  +++   +E +   + +E E+  +   I
Sbjct: 244 ARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAI 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 304 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 364 DAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADR 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSD
Sbjct: 424 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 484 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 544 INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 603

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 604 DGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 699


>gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15]
          Length = 734

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 536]
 gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
           O1]
 gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
 gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
 gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
 gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           200-1]
 gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           45-1]
 gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           185-1]
 gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
 gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536]
 gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
           O1]
 gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
 gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
 gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
 gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           185-1]
 gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           200-1]
 gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           45-1]
 gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
           83972]
 gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           110-3]
 gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           153-1]
 gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           16-3]
 gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           57-2]
 gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           60-1]
 gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
          Length = 734

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter
           salexigens DSM 3043]
 gi|122990389|sp|Q1QSZ4|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 707

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/690 (49%), Positives = 465/690 (67%), Gaps = 12/690 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETGRIARQ+ GAV+ T  +TVVL TVV  + +   Q FFPL+V+YQE+TY
Sbjct: 8   FQYGHSTVTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSVHYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE RPTE E L SR+IDR IRPLF   + NE QV+  V+  D    P +
Sbjct: 68  AVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTDRNHDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            +M+  SAAL +SG+PF GP+  A+V +   + Y LNP ++E + S L++ V+GT+ AVL
Sbjct: 128 AAMLGTSAALAISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSELNMVVAGTEKAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA +L ED +L A++FGH E +  I AI  LA    K     +P   D+   S L 
Sbjct: 188 MVESEAKELLEDEMLGAVLFGHQEMQAAITAIQALADEAGKPRWDWQPPTDDTTLKSALA 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFEDIQA 300
            E    + E  R++    +K  R   +  LK + +   + E S  +   ++   F  ++ 
Sbjct: 248 AEFEAKVGEAYRIT----DKMARQDALSALKDEALERLAGEESGQYAADDVKGAFASLEK 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +VVR+ ++  + R+DGRD  TVR +S +VG L +THGS++F RG+TQA+VV TLGT  D 
Sbjct: 304 RVVRSRIIQGEPRIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVVATLGTLRDA 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q ++SL G +++ F++HYNF P + GE   MG P RREIGHGRLARR +  +LP    FP
Sbjct: 364 QLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAMLPSEEDFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVKD D F +L+DI 
Sbjct: 424 YTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDEDGFAVLTDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+E IM  ALQQA   RLHIL +M+ V++
Sbjct: 484 GDEDHLGDMDFKVAGSTAGVTALQMDIKIEGINEEIMETALQQAHEARLHILEQMNTVIA 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           +SR ++ +  P +  + I PD+IR+VIG GG  IR I + TGA +++DDDGTV+I +   
Sbjct: 544 QSRSEVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICDDTGASIDLDDDGTVRIYAEDK 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA + + +IT  PE+ K+Y+G V ++ DFGAFV F    DGLVHISQ+  ERV   
Sbjct: 604 TAAKAAIDTVLAITAEPEIGKLYRGTVARITDFGAFVTFMPGTDGLVHISQIVPERVNDV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D + EG  V VK+LD D+R ++KLS+K V
Sbjct: 664 RDYLSEGQEVIVKVLDIDNRNRVKLSIKEV 693


>gi|71278713|ref|YP_268932.1| polynucleotide phosphorylase/polyadenylase [Colwellia
           psychrerythraea 34H]
 gi|123774912|sp|Q482T5|PNP_COLP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71144453|gb|AAZ24926.1| polyribonucleotide nucleotidyltransferase [Colwellia
           psychrerythraea 34H]
          Length = 705

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/695 (49%), Positives = 477/695 (68%), Gaps = 12/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +  T + +     + LETG IARQ+  AV+A+  +T VL +VV  +  K GQDFFPLT
Sbjct: 1   MLNPITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA GKIPG + +RE RP+E E LI+R+IDR IRPLF + + NE QVII V+  
Sbjct: 61  VNYQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E +P ++S++  SAAL +SGLPF GPV  A+V Y +GQY+LNP   E   S LDL VS
Sbjct: 121 NPEIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237
           GT  AVLMVE EA+ LSE+V+L A+++GH + +  + AI +      K  +   S D+  
Sbjct: 181 GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEF-----KAEVNTPSWDWVA 235

Query: 238 ----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
               ++L  +++++ +  +  +  I EK VR ++I +++  ++    +E++  +  E   
Sbjct: 236 PVKNAELLAKIAELSEAQVNEAYQITEKAVRYEKIKEIRSSVLEALLAENADVDVQEAKD 295

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +F D++  VVR  + D   R+DGRD E++R +    G+L RTHGS++F RG+TQA+V  T
Sbjct: 296 LFHDLEKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTAT 355

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ D Q +D+L G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R +  V+
Sbjct: 356 LGTQRDAQRLDTLMGDKTDPFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVM 415

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+ F
Sbjct: 416 PSLEEFPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKF 475

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++LSDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  R HIL+
Sbjct: 476 VVLSDILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQIALNQAKAARTHILS 535

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M + +   R  + EF PR+  M +  D+IR++IG GG  IR + E+TG  + I+DDGTV
Sbjct: 536 VMDEAIGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIEDDGTV 595

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KIA++S  + E A   I+++T   EV  +Y G+VV+++DFGAFV+    +DGLVHISQ+S
Sbjct: 596 KIAATSGEQAEDAINRIKALTAEIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQIS 655

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ERV   S+V+ EG  V VK+L+ D +G+++LS+K
Sbjct: 656 EERVNNVSEVLTEGQEVKVKVLEVDRQGRVRLSIK 690


>gi|89109929|ref|AP_003709.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. W3110]
 gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
           REL606]
 gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           187-1]
 gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           175-1]
 gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           146-1]
 gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
 gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K12 substr. W3110]
 gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
           REL606]
 gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BL21(DE3)]
 gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           175-1]
 gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           187-1]
 gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           146-1]
 gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
           H10407]
 gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
          Length = 734

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 EDL933]
 gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. Sakai]
 gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei Ss046]
 gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11]
 gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
 gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
 gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O103:H2 str. 12009]
 gi|291284540|ref|YP_003501358.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. CB9615]
 gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
 gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           107-1]
 gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           119-7]
 gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           84-1]
 gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           182-1]
 gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           21-1]
 gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           124-1]
 gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           78-1]
 gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
 gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
 gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity
           [Escherichia coli O157:H7 str. EDL933]
 gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
 gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
 gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11]
 gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
 gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
 gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O103:H2 str. 12009]
 gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. CB9615]
 gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
 gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           84-1]
 gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           182-1]
 gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           21-1]
 gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           119-7]
 gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           107-1]
 gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           124-1]
 gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           78-1]
 gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           85-1]
 gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           117-3]
 gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
 gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
          Length = 734

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/693 (48%), Positives = 474/693 (68%), Gaps = 10/693 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +   ++E  + +  E+  +   I+  
Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLTAEDDTLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
           TW07627]
 gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
           TW07627]
          Length = 711

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KKVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++    V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMNQEVPVKVLEVDRQGRIRLSIK 690


>gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
 gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
          Length = 714

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/696 (48%), Positives = 472/696 (67%), Gaps = 10/696 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  ++ K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE Q+I  V+  + +  P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSVNPQVHPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GTQ AVL
Sbjct: 128 IVALIGASAALSLSGLPFNGPIGAARVGYLNDQYVLNPTTDELKESKLDLVVAGTQGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+ I+ L     K     +P  ++      L+
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIDQINALVAEAGKPRWDWKPEAVNES----LQ 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I EK  R  Q+  +K +  +   +E +S ++ EI  +   ++  
Sbjct: 244 TRIAALAESRLSEAYQITEKQERYAQVGVIKSETTAALLAEDASLDDNEIGDLLHALEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L    R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRILSGAPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P   GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 364 NLDELMGEKTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKADAFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           D ++ G  V VK+L+ D +G+++LS+K   +   +P
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQAAEP 699


>gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/696 (48%), Positives = 476/696 (68%), Gaps = 13/696 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT+NYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+ I+ L K   K     +P   +      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298
             +  + +  L  +  I +K  R  QID +K  +++   +E +   + +E E+  +   I
Sbjct: 244 ARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAI 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 304 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 364 DAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADR 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSD
Sbjct: 424 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 484 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 544 INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 603

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 604 DGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 664 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 699


>gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 721

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/693 (48%), Positives = 474/693 (68%), Gaps = 10/693 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 18  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +   ++E  + +  E+  +   I+  
Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLTAEDDTLDANELGEILHAIEKN 313

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 494 DEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 553

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 554 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 613

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 614 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 673

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 674 DYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 706


>gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
 gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
          Length = 734

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRVRLSIK 713


>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 715

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 486/697 (69%), Gaps = 15/697 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL E+V+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289
              +++ E    + + +L  +  I +K  R  ++ ++      K      ++   + ++ 
Sbjct: 243 ALIARVTE----IAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           S++  ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
           str. 2457T]
 gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
           str. 301]
 gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O26:H11 str. 11368]
 gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O111:H- str. 11128]
 gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           145-7]
 gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T]
 gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
 gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O26:H11 str. 11368]
 gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O111:H- str. 11128]
 gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017]
 gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           145-7]
          Length = 734

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
 gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
          Length = 713

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/701 (48%), Positives = 484/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289
                L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++ 
Sbjct: 243 V----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
 gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
          Length = 713

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 486/697 (69%), Gaps = 15/697 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL E+V+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 181 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEG 289
              +++ E    + + +L  +  I +K  R  ++ ++      K      ++   + ++ 
Sbjct: 241 ALIARVTE----IAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA 296

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 297 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 356

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 357 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 416

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 417 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 476

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 477 GNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRM 536

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 537 HILGKMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 596

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 597 DGVVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHI 656

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           S++  ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 657 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693


>gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
 gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
          Length = 734

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 716

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/688 (48%), Positives = 476/688 (69%), Gaps = 2/688 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL VSGT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVSGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK VR +QID +K ++++  ++E  + +EG I+ +   +++++VR+
Sbjct: 247 ALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQIVRS 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +     +L RTHGS+LF RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+T   ++IDDDGTVKIA++     +A
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKA 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    EVN+IY G+V +V+DFGAFV   G ++GLVHISQ++ ERV + +D + 
Sbjct: 607 VMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLT 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            G  V VK+++ D +G+I+L+MK ++  
Sbjct: 667 VGQEVQVKVVEIDRQGRIRLTMKDINNT 694


>gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC
           8739]
 gi|189037305|sp|B1IQV7|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
           8739]
          Length = 711

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 697

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    A E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPTKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
          Length = 734

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 472/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNEA----LN 266

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 267 ARVAALAESRLSDAYRITDKQERYAQVDAIKSETIDALLAEDETLDANELGEILHAIEKN 326

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 327 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 386

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 387 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 446

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 447 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 506

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 507 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 566

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 567 PRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 626

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 627 KAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 686

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 687 DYLQMGQEVPVKVLEVDRQGRVRLSIK 713


>gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
 gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
          Length = 701

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/705 (49%), Positives = 484/705 (68%), Gaps = 19/705 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++    + +ETG IARQ+ GAV  + GETVVL  V  ++ +K GQDFFPLT
Sbjct: 1   MFNKHVKSFQYGQHTVTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG+YVLNP +    +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236
           GT  AVLMVE EA  L EDV+L A+++GHNE + VI AI++LA   A  P V D K    
Sbjct: 181 GTAQAVLMVESEAQILPEDVMLGAVVYGHNEMQAVIRAINELAD--AVNPEVWDWKAPET 238

Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEI 291
                +K++E   Q + E  +    I +K  R  ++D+    + +   +E + +    +I
Sbjct: 239 DAALVAKVQEIAGQTVAEAFK----IRQKQARTAKLDEAWAAVEAALITEDTDTLAANQI 294

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +F+ ++A VVR+ +L  + R+DGRD+ TVR I+ Q G+L RTHGS+LF RG+TQA+ V
Sbjct: 295 KGIFKHLEANVVRSQILAGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAV 354

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ DEQ +D+LSG   + FM+HYNF P +TGE  RMGAP RREIGHGRLA+RA+  
Sbjct: 355 ATLGTQRDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLG 414

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+
Sbjct: 415 VLPSPEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGN 474

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHI
Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   ++  + +L +  PR+  M I  D+IR+VIG GG+ IR +  +TG ++NI+DDG
Sbjct: 535 LEQMKAAVAGPQ-ELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDDG 593

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649
           T+ IA+ ++  +EAAR+ I  IT   EV ++Y G V+K++D   GA V     +DGLVHI
Sbjct: 594 TITIAAVNVEAVEAARKRIEEITAEVEVGQVYNGVVIKILDNNVGAIVSVMPGKDGLVHI 653

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQN 693
           SQ++ ERV   +D ++ G  V VK L+ DDRG+++LSMK ++DQ 
Sbjct: 654 SQIAHERVKDVNDYLRVGQNVRVKALEVDDRGRVRLSMKALLDQT 698


>gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC
           3083-94]
 gi|226702689|sp|B2U211|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC
           3083-94]
          Length = 711

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + ++TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           115-1]
 gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           115-1]
          Length = 734

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 473/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
 gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
          Length = 707

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/694 (48%), Positives = 484/694 (69%), Gaps = 6/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG +ARQ+ GAV+     TVVLATVV     K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGQHKVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A+SAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH +    I AI +L +   K   V D +  +K
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDAGKP--VWDWQAPAK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E    +++++    L+ +  I  K  R +        +++   ++  +++   +  +  
Sbjct: 241 DEPLIAKVNELAGAKLQAAYQIRSKQARTQACRVAYADVMAALKADGVAFDGVTVEGMLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 DIEAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+LSG   + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E++ ++ +F PR+ +M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA
Sbjct: 541 EAMGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+  A+ + A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ ER
Sbjct: 601 SNDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K +D + EG  V VK+L+ D++G++KLSMK +
Sbjct: 661 VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKAL 694


>gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
 gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
          Length = 698

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/692 (49%), Positives = 478/692 (69%), Gaps = 8/692 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++  + + LET RIARQ+ GAVL T GE  VLATVV  +  K GQDFFPLTVNYQE
Sbjct: 8   TKTFQFGNQEVTLETQRIARQASGAVLVTMGEIQVLATVVGKKETKPGQDFFPLTVNYQE 67

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+++RE+RP+E E L SR+IDR IRPLF + Y NE QV++ V+  D E+ 
Sbjct: 68  KYYAAGKIPGGFIKRENRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVLTVVSADKEND 127

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           P + +M+ ASAAL +SG+PF+GP+  A+V Y   NG YVLNP   + + SL D+ V+GT+
Sbjct: 128 PDIAAMIGASAALAISGIPFDGPIGAARVGYDAENG-YVLNPTYAQLETSLLDMVVAGTE 186

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DAVLMVE EA +LSED +L  ++F H E +  + A+ + A     E     + +  ++L 
Sbjct: 187 DAVLMVESEAKELSEDQMLGGVLFAHQEFQVAVNAVKEFAAAVGTERWDWQAPEIDTELY 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQID--DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
            +M ++   DL  +  I +K  R   +D  + K K      +E  S N  E+  +F+ +Q
Sbjct: 247 GKMKEVAFADLTAAYQIKDKLARQDAVDAANTKLKEALLVDTEEES-NAEELSKLFKKLQ 305

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR  +L  + R+DGRD++TVRD++ Q  +L+ THGS+LF RG+TQ+I  VTLG+  D
Sbjct: 306 KEVVRERILSNEPRIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTLGSTRD 365

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q V+ L   Q+++F+ HYNF P + GE  RMGAP RRE+GHGRLARR +  ++P    F
Sbjct: 366 AQVVEFLHEVQKDNFLFHYNFPPYSVGECGRMGAPGRREVGHGRLARRGVQAMMPSLEDF 425

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VC +SLALMDAGVPI  PVAGIAMGLVK+G+ F +L+DI
Sbjct: 426 PYTVRVVSEITESNGSSSMASVCSASLALMDAGVPIKAPVAGIAMGLVKEGERFSVLTDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QA   R+ IL +M++V+
Sbjct: 486 LGDEDHLGDMDFKVAGSEAGITALQMDIKIQGITEQIMEIALEQALDARMTILKQMNEVI 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R ++    P    + IP D+I   IG GG  IRGI E+TGA V+I ++G + I + +
Sbjct: 546 AEPRSEMPSNAPTYLTVKIPADKIAEAIGKGGATIRGITEETGADVDISEEGVISIFALT 605

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+ M  ++T   EV  IY+G+V K++DFGAFV+    +DGLVHISQ+S ERV  
Sbjct: 606 KDAAEKAKGMFEAVTAEAEVGTIYEGKVNKIVDFGAFVNILPGKDGLVHISQISDERVEN 665

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            +D ++EG  + VK+LD D++G+IKL+MK ++
Sbjct: 666 VADYIQEGAVIKVKVLDVDNKGRIKLTMKGIE 697


>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
          Length = 713

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/701 (48%), Positives = 483/701 (68%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289
                L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++ 
Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS195]
 gi|304410260|ref|ZP_07391879.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS183]
 gi|307302029|ref|ZP_07581787.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           BA175]
 gi|187611316|sp|A3D7K1|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037315|sp|A9KZW6|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS195]
 gi|304351669|gb|EFM16068.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS183]
 gi|306914067|gb|EFN44488.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           BA175]
 gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS678]
          Length = 700

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+GT  AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245
           E EA  L E+V+L ++++GH++ + VI+AI++  K  A +P       ++D + L  ++ 
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++ KVVR 
Sbjct: 247 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q +DS
Sbjct: 307 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+FPY++R+
Sbjct: 367 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   R  
Sbjct: 487 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+    EA
Sbjct: 547 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 603

Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA  SD
Sbjct: 604 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ++    V VK+++ D +G+++LS+K
Sbjct: 664 HLELNQEVAVKVMEVDRQGRVRLSIK 689


>gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12D]
 gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D]
          Length = 724

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/697 (49%), Positives = 489/697 (70%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W G  +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI +L +   K      +   ++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K + +  +      +  E+ ++  ++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEAGVEADGVEVDNILFEL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 303 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+ PVLP+  +
Sbjct: 363 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVP+   VAG+AMGL+ + + F +L+D
Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMRAA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 603 SSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 663 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 699


>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) (PNPase) (CAP87K) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 709

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/683 (48%), Positives = 475/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G++PG + RRE RP E E L++R+IDR +RPLF   + NE Q++  V+  + + +P 
Sbjct: 68  YAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASA L LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL VSGT  AVL
Sbjct: 128 IVAMIGASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VI+ I+ LA    KE      +  ++ L + ++
Sbjct: 188 MVESEADILTEEQMLGAVVFGHEQQQVVIDNINALAAEAGKEKWNWVPESVNQALHDRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + ++ L  +  I EK  R  Q+D +K+++ +    +  +  E EI  +   ++ KVVR+
Sbjct: 248 GLAEDRLGDAYRITEKQERYAQVDAIKEEVTAALLEQDEALEEAEIHEILGSLEKKVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVAAVMPKANEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + ++  R  
Sbjct: 488 LGDMDFKVAGSCEGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQAINSPRND 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AISRIEEITAEIEVARIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 VGQEVSVKVLEIDRQGRVRLSIK 690


>gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 707

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/683 (49%), Positives = 474/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  ++GQDFFPLTVNYQER 
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP E E L +R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 68  YAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP +DE  Q  LDL V+GT +AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLVVAGTDNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ LSED +L A++FGH++ + VIE I  LA    K      + + +  L+  ++
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWHAPEVNVALQHRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           +M +  L  +  I EK  R  ++D++K+ ++    +E  + + GEI  +   ++  VVR 
Sbjct: 248 EMAEARLGEAYHITEKQARYAKVDEIKESVIVDLLAEDDALDAGEISDILGALEKAVVRG 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P    FPYT+R+
Sbjct: 368 LTGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++  R  
Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINAPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 548 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 MGQEVAVKVLEVDRQGRVRLSIK 690


>gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS185]
 gi|187611290|sp|A6WRG3|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS185]
          Length = 700

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+GT  AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245
           E EA  L E+V+L ++++GH++ + VI+AI++  K  A +P       ++D + L  ++ 
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++ KVVR 
Sbjct: 247 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q +DS
Sbjct: 307 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+FPY++R+
Sbjct: 367 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   R  
Sbjct: 487 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+    EA
Sbjct: 547 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 603

Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA  SD
Sbjct: 604 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ++    V VK+++ D +G+++LS+K
Sbjct: 664 HLELNQEVAVKVMEVDRQGRVRLSIK 689


>gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           86-028NP]
 gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittAA]
 gi|81336747|sp|Q4QNV7|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           86-028NP]
 gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittAA]
          Length = 709

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/683 (49%), Positives = 471/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIEA+ + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVIEAVKEFAKEAGKPRWDWVAPQPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +E +IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISESKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|254782721|sp|B7UJ59|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 711

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP   A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPNGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
 gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
          Length = 713

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/701 (48%), Positives = 483/701 (68%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEG 289
                L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++ 
Sbjct: 243 A----LNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + ++  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKV GT  G+TA+QMD+KI GI++ IM +AL QAK GR+
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVVGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS155]
 gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS155]
          Length = 703

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTVNYQE+TYA
Sbjct: 12  EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P ++
Sbjct: 72  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+GT  AVLMV
Sbjct: 132 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 191

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245
           E EA  L E+V+L ++++GH++ + VI+AI++  K  A +P       ++D + L  ++ 
Sbjct: 192 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 249

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++ KVVR 
Sbjct: 250 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 309

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q +DS
Sbjct: 310 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 369

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+FPY++R+
Sbjct: 370 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 429

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDH
Sbjct: 430 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 489

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   R  
Sbjct: 490 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 549

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+    EA
Sbjct: 550 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 606

Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA  SD
Sbjct: 607 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 666

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ++    V VK+++ D +G+++LS+K
Sbjct: 667 HLELNQEVAVKVMEVDRQGRVRLSIK 692


>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
 gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 723

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/704 (48%), Positives = 485/704 (68%), Gaps = 10/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SG+PF GPV  A+V Y +GQY+LNP   +   S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQIATSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI +L +   K      P   + 
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQTAINAIHELVREGGKPEWDWAPAAKNE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              +K+ E    +++E  ++     +K  R +++ ++   + +  +      ++ E+ ++
Sbjct: 243 PLIAKVTEVALPLLQEAYQLR----QKSARSQKLKEVSANVAAALAEAGVEADKVEVGNI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             D++AK+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TL
Sbjct: 299 MFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP
Sbjct: 359 GTKSDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +  +F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F 
Sbjct: 419 KEDEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL+ 
Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSN 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ 
Sbjct: 539 MQEAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTIT 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS+S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  
Sbjct: 599 IASTSTEGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVN 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ERV    D +KEG  V VKL+  D++G+++LS+K      G  I
Sbjct: 659 ERVKDIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEGGSI 702


>gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 722

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/697 (49%), Positives = 489/697 (70%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W G  +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI +L +   K      +   ++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVP+   VAG+AMGL+ + + F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1617]
 gi|187611311|sp|Q32BG9|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1617]
          Length = 711

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D +  G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLLMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|311695954|gb|ADP98827.1| polynucleotide phosphorylase/polyadenylase [marine bacterium HP15]
          Length = 727

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/692 (50%), Positives = 473/692 (68%), Gaps = 12/692 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E  G+ + LETGRIARQ+ G+VL T  +  VL TVV  +  K GQ FFPLTVNY E+TY
Sbjct: 31  FELGGKTVTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVNYFEKTY 90

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE QVI  VM       P +
Sbjct: 91  AVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVITTVMSSSKNQDPDI 150

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQDAVL 186
            +M+AASAAL +SG+PF+GP+  ++V Y N + Y LNP  +E Q SL D+ V+GT+DAVL
Sbjct: 151 AAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLLDMVVAGTEDAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  L+ED +L  +++GH E +  + AI + A    K     +P   +++  + ++
Sbjct: 211 MVESEAKGLTEDQMLGGVLYGHQEMQTAVTAIKEFAAEIGKPRWDWQPAAENTELLNAIK 270

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVFEDIQA 300
            + +  I+E    +  I +K  R +++ ++K   V   + E     +E E+   F  I+ 
Sbjct: 271 ADFAGAIEE----AYGIRDKMARYERLGEVKAAAVEKLAGEEEGQPSEDEVKKYFGKIEK 326

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  ++D K R+DGRD++TVR I  +VG+L   HGS+LF RG+TQAIV  TLGT  D 
Sbjct: 327 SVVRQQVIDGKPRIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSRDV 386

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G +++ F+ HYNF P + GE  R+G P RRE+GHGRLA+R +  V+P   +FP
Sbjct: 387 QIIDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVLAVMPTLEEFP 446

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+GD F +L+DI 
Sbjct: 447 YAIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDKFAVLTDIL 506

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA   RLHIL EM+KV+S
Sbjct: 507 GDEDHLGDMDFKVAGTQEGVTALQMDIKINGITDEIMEIALEQAHAARLHILGEMNKVIS 566

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R +L    P +  + I P++IR+VIG GG VIR I ++TGA +++DDDG VKI + + 
Sbjct: 567 EPRAELSARAPSITTIKINPEKIRDVIGKGGSVIRAICDETGASIDLDDDGNVKIYADNQ 626

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA   ++ IT   EV  IYKG+V +++DFGAFV+    +DGLVHISQ+S  R+   
Sbjct: 627 EAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISDRRIENV 686

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +D + EG  V VK+LD D+RG++KLSMK + +
Sbjct: 687 TDELSEGQEVLVKVLDVDNRGRVKLSMKEIKE 718


>gi|329896238|ref|ZP_08271416.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328921909|gb|EGG29276.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 746

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/684 (50%), Positives = 471/684 (68%), Gaps = 6/684 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++ G+ + LETGRIARQ+ GAVL T   T VL TVV  +S K GQDFFPL+V+YQE++Y
Sbjct: 8   FQYGGQTVTLETGRIARQATGAVLVTVENTTVLVTVVAAKSQKPGQDFFPLSVHYQEKSY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE RP+E E L SR+IDR IRPLF+  + NE QV+  VM  D    P +
Sbjct: 68  AVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFADGFMNEVQVMCTVMAADDHIDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQGS-LDLFVSGTQDAV 185
            +M+  SAAL +SG+PF GP+  A+V + N Q  Y+LNP  +  +GS LD+ V+GT+DAV
Sbjct: 128 PAMIGTSAALAISGVPFNGPIGAARVGF-NAQEGYLLNPDYNALKGSDLDMVVAGTKDAV 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           LMVE EA +L+ED +L A++F H E + VI AI++L     K      +   ++ L E +
Sbjct: 187 LMVESEAKELTEDQMLGAVLFAHQEMQTVIAAINELVAEAGKPKWDWQAPAVNEALVEAV 246

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                 DL  +  I EK  R  ++D+++   V   + E     + ++  VF+ ++  +VR
Sbjct: 247 RAQAGADLGAAYRITEKAERYARVDEIRTACVEALAVEDGPSAD-DVKDVFKSVEKALVR 305

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +L  + R+DGRD +TVR I+  V LL R HGS+LF RG+TQAI  VTLG+  D Q +D
Sbjct: 306 QRILAGEPRIDGRDGKTVRQIACSVDLLPRVHGSALFTRGETQAIGAVTLGSPRDAQIID 365

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L G +++ FM+HYNF P + GE  R+GA  RREIGHGRLARR +  VLP   +FPYT+R
Sbjct: 366 ALEGERKDAFMLHYNFPPYSVGEAGRVGATGRREIGHGRLARRGLAAVLPNQDEFPYTIR 425

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+DI GDED
Sbjct: 426 VVSEITESNGSSSMASVCVGSLAMMAAGVPLKAPVAGIAMGLVKEGNQFAVLTDILGDED 485

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA   RLHIL +M+ V+S +R 
Sbjct: 486 HLGDMDFKVAGTAAGVTALQMDIKIEGINEQIMEIALEQALHARLHILGQMNSVISTARE 545

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
                 P +  + +  D+IR++IG GG  IR I E++GA V+IDDDGTVKI   + A  +
Sbjct: 546 VTSADAPSMVTLKVDSDKIRDIIGKGGVTIRAITEESGATVDIDDDGTVKIFGQNQAARD 605

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A EM+  IT   EV ++Y+G V +++DFGAFV     +DGLVHISQ++ +RV K +D +
Sbjct: 606 RAVEMVMEITAEAEVGQVYEGTVARIVDFGAFVTILPGKDGLVHISQIANQRVEKVTDFL 665

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           +EG TV VK+LD D RG+IKLS+K
Sbjct: 666 EEGQTVRVKVLDVDQRGRIKLSIK 689


>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
 gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
          Length = 709

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/683 (48%), Positives = 471/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 67  YAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q VLNP + E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALTLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++++VR 
Sbjct: 247 AIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALESQIVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+
Sbjct: 367 LTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I+++IG GG  IR + E+TG  ++IDDDGTVKIA+      + 
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDSNAAKN 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    E   IYKG+V ++ DFGAFV   G ++GL+HISQ++ ERV K SD ++
Sbjct: 607 VMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDYLQ 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVNVKVVEIDRQGRIRLTMK 689


>gi|328474238|gb|EGF45043.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
           10329]
          Length = 711

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/694 (48%), Positives = 481/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++  A++       +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+ +++++ +  L  +  I EK  R  +I ++  ++     ++    +  EI ++F D
Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS223]
 gi|254782734|sp|B8E6N7|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS223]
          Length = 699

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/686 (50%), Positives = 483/686 (70%), Gaps = 12/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+GT  AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGTAGAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMS 245
           E EA  L E+V+L ++++GH++ + VI+AI++  K  A +P       ++D + L  ++ 
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKPTWDWTAPTQD-ADLVAQIK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++ KVVR 
Sbjct: 247 ELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEKKVVRG 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q +DS
Sbjct: 307 RIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDS 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+FPY++R+
Sbjct: 367 IMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFPYSVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   R  
Sbjct: 487 LGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGSHRDD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+    EA
Sbjct: 547 ISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG---EA 603

Query: 606 AREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA  SD
Sbjct: 604 TKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSD 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ++    V VK+++ D +G+++LS+K
Sbjct: 664 HLELNQEVAVKVMEVDRQGRVRLSIK 689


>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis MSMB43]
          Length = 706

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/694 (48%), Positives = 483/694 (69%), Gaps = 15/694 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLTV+Y E+T
Sbjct: 3   EFQWGQHKVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKT 62

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  + E    
Sbjct: 63  YSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPAD 122

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP   + + S LDL V+GT+ AVL
Sbjct: 123 IPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRLDLVVAGTERAVL 182

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA+QL EDV+L A++FGH + +  I+AI +L +   K     +P   D      L 
Sbjct: 183 MVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDEA----LN 238

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDL-----KKKMVSYFSSEHSSWNEGEIVSVFE 296
             ++++ + +L  +  I +K  R  ++ ++      K      ++   + ++  + ++  
Sbjct: 239 ARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGNILF 298

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 299 DLEAKIVRGQILGGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGT 358

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   LP  
Sbjct: 359 KGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSA 418

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F +L
Sbjct: 419 DEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL +M 
Sbjct: 479 TDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMK 538

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V IA
Sbjct: 539 EAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVVTIA 598

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++  ER
Sbjct: 599 STNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIVNER 658

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 VKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 692


>gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
           AJ13355]
          Length = 715

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 14  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERT 73

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE QVI  V+  + +  P 
Sbjct: 74  YAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPD 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE + S LDL V+GTQ+AVL
Sbjct: 134 IVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGTQNAVL 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VIE I+ L     K     +P   ++   S++ 
Sbjct: 194 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANTALISRVA 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I +  R++    +K  R  Q+  +K + ++   +E  S +  EI  +   ++  
Sbjct: 254 ALAETRISDAYRIT----DKQERYTQVGVIKDETIAALLAEDESLDAAEIGDIVHSLEKN 309

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT +L+ + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 310 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 369

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 370 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 429

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI G
Sbjct: 430 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSDILG 489

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 490 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 549

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 550 PRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 610 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 669

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+++ D +G+++LS+K
Sbjct: 670 DYLQMGQEVPVKVMEVDRQGRVRLSIK 696


>gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
 gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
          Length = 711

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 474/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTPEELKVSKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A+++GH + + VI+ I++L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVYGHEQQQIVIQNINELVKEAGKPRWDWQPEAVNEA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAESRLSEAYRITDKQERYAQVDVIKSETIDTLVAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D + G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   QFPY
Sbjct: 364 IIDEIMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTMEQFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEGDNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL+ M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++    V VK+L+ D +G+I+LS+K
Sbjct: 664 DYLQMNQEVPVKVLEVDRQGRIRLSIK 690


>gi|253991498|ref|YP_003042854.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8)
           (polynucleotid phosphorylase) (pnpase) (cap87k)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
           asymbiotica]
          Length = 708

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/683 (48%), Positives = 477/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTIAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G++PG + RRE RP E E L++R+IDR +RPLF + + NE Q++  V+  + + +P 
Sbjct: 68  YAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL VSGT  AVL
Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ L+E+ +L A++FGH++ + VI+ I+ L     KE      +  ++ L + ++
Sbjct: 188 MVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALVAEAGKEKWDWAPEPINQELHDRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R  Q+D +K ++++    +  + +E EI  +  +++  VVR+
Sbjct: 248 ALAESRLGDAYRITEKQERYAQVDVIKDEVIAALLEQDEALDEAEIHEILGNLEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G++A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + ++  R  
Sbjct: 488 LGDMDFKVAGSREGVSALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINCPRND 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AISRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 VGQEVSVKVLEVDRQGRVRLSIK 690


>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum
           GMI1000]
 gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum GMI1000]
          Length = 717

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/697 (49%), Positives = 487/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EANQLSE+V+L A+++GH + +  I AI  L +   K      +   ++
Sbjct: 181 GTERAVLMVESEANQLSEEVMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQMVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103]
 gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103]
          Length = 757

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 56  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVNYQERT 115

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE QVI  V+  + +  P 
Sbjct: 116 YAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPD 175

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE + S LDL V+GTQ+AVL
Sbjct: 176 IVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGTQNAVL 235

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VIE I+ L     K     +P   ++   S++ 
Sbjct: 236 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANTALISRVA 295

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I +  R++    +K  R  Q+  +K + ++   +E  S +  EI  +   ++  
Sbjct: 296 ALAETRISDAYRIT----DKQERYTQVGVIKDETIAALLAEDESLDAAEIGDIVHSLEKN 351

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT +L+ + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 352 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQ 411

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 412 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 471

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI G
Sbjct: 472 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSDILG 531

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 532 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 591

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 592 PRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 651

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 652 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 711

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+++ D +G+++LS+K
Sbjct: 712 DYLQMGQEVPVKVMEVDRQGRVRLSIK 738


>gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
           Short=PNPase
 gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
          Length = 709

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/683 (48%), Positives = 475/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE +++  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL VSGT  AVL
Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ L+E+ +L A++FGH++ + VI+ I+ LA    KE      +  ++ L + ++
Sbjct: 188 MVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALAAEAGKEKWDWVPEPVNQALHDRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K ++ +    +  +  E EI  +   ++  VVR+
Sbjct: 248 ELAESRLGDAYRITEKQERYAQVDAIKDEVTAALLEQDETLEEAEIHEILGSLEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P+  +FPYT+R+
Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + ++  R  
Sbjct: 488 LGDMDFKVAGSCEGISALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAITTPRDD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 548 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AISRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G    VK+L+ D +G+++LS+K
Sbjct: 668 VGQETSVKVLEIDRQGRVRLSIK 690


>gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase/polyadenylase [Shigella dysenteriae
           Sd197]
 gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
          Length = 734

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 31  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 91  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 150

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 151 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 210

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 211 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 265 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 325 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 384

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 385 AQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMDKF 444

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 445 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 504

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 505 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 564

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 565 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 624

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 625 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 684

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D +  G  V VK+L+ D +G+I+LS+K
Sbjct: 685 VTDYLLMGQEVPVKVLEVDRQGRIRLSIK 713


>gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica
           RCB]
 gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas
           aromatica RCB]
          Length = 715

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/699 (50%), Positives = 482/699 (68%), Gaps = 5/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V      +    + +ETG +ARQ+ GAVL +  ETVVL TVV  ++ K GQDFFPLT
Sbjct: 1   MFNVVKKTFAYGDHQVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGG+ +RE RP+E E L  R+IDR IRPLF   + NE QVI  VM  
Sbjct: 61  VDYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SG+PF GP+  A+V YI+GQYVL P L + +GS LDL V+
Sbjct: 121 NPEIDSDIPALIGASAALAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237
           GT+ AVLMVE EA+QLSE+V+L A++FGH E +  I AI++L +   K     ++  KD 
Sbjct: 181 GTEAAVLMVESEADQLSEEVMLGAVVFGHTEMQKAINAINELVEEAGKPEWEWEAAPKD- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFE 296
             L   +S ++   L  +  I  K  R + +  ++ + V+   +    + +E  + ++F 
Sbjct: 240 EALVASLSALVSAKLEEAYNITVKQTRSQAVKAIRAEAVAALCTGAEGAPDENTVGNLFH 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+A +VR  +L    R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+ V TLGT
Sbjct: 300 EIEASIVRGRILSGAPRIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP+ 
Sbjct: 360 NRDEQIIDALAGEYRDRFMLHYNMPPYATGECGRVGTPKRREIGHGRLAKRALLAVLPKP 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             F Y++R+VSEITES+GSSSMA+VCG  LAL+DAGVP+   VAGIAMGL+KDG+ F +L
Sbjct: 420 EDFSYSMRLVSEITESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI++ IM +AL QAK  R+HILN M 
Sbjct: 480 TDILGDEDHLGDMDFKVAGSTTGITALQMDIKIQGITKEIMQVALAQAKEARIHILNLMQ 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +  +  R ++  + PR+    I P++IR+VIG GG VIR + E+TG  ++I DDGT+ IA
Sbjct: 540 ESAAGPREEMSAYAPRLYTFKINPEKIRDVIGKGGAVIRALTEETGTTIDIQDDGTITIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++S     AAR  I +IT   E+ KIY+G V+K++DFGA V     +DGL+HISQ++ ER
Sbjct: 600 ATSGEAAAAARSRIDAITAEVEIGKIYEGTVLKILDFGAIVSVLPGKDGLLHISQIAQER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V K  D VKEG  V VK+L+ DDRG++KLSMK    + G
Sbjct: 660 VNKVEDYVKEGQIVRVKVLETDDRGRVKLSMKAAAADEG 698


>gi|28899226|ref|NP_798831.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838303|ref|ZP_01990970.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|260362211|ref|ZP_05775195.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260879079|ref|ZP_05891434.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260897750|ref|ZP_05906246.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|260900806|ref|ZP_05909201.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|81727008|sp|Q87M06|PNP_VIBPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28807450|dbj|BAC60715.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748292|gb|EDM59151.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088979|gb|EFO38674.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089536|gb|EFO39231.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308108195|gb|EFO45735.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308111467|gb|EFO49007.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           K5030]
          Length = 711

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/694 (48%), Positives = 481/694 (69%), Gaps = 9/694 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++  A++       +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+ +++++ +  L  +  I EK  R  +I ++  ++     ++    +  EI ++F D
Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  A   AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++ 
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAE 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 658 KRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
 gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
          Length = 706

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEAQILSEDQMLGAVVFGHEQQQIVIENINALVAQAGKPKWDWHAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  + +   ++  + N GEI  +  D++  VVR+
Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTAVLLAQDETLNAGEIHDILGDVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  D+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKDDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVNRIYDGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQEVKVKVMEVDRQGRIRLSIK 690


>gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|81636811|sp|Q9CLU1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 714

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/691 (48%), Positives = 480/691 (69%), Gaps = 11/691 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q++  V+  + +  P 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP ++E  Q  LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VI+AI +      K     +  +  + L E++ 
Sbjct: 187 MVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW---NEGEIVSVFEDIQAKV 302
            + +  L  +  I EK  R +QID +K  +++  ++E +     +EG+IV +F  +++++
Sbjct: 247 AIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFTALESQI 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D Q 
Sbjct: 307 VRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQI 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPY 
Sbjct: 367 IDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GD
Sbjct: 427 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGD 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +   
Sbjct: 487 EDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAP 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+    +
Sbjct: 547 RADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAA---VD 603

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             +A+E++  I D+    E   +YKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 604 GNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEK 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SD +  G  V VK+++ D +G+I+L+MK V
Sbjct: 664 VSDYLAVGQEVTVKVVEIDRQGRIRLTMKEV 694


>gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 716

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/688 (48%), Positives = 476/688 (69%), Gaps = 2/688 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIE + +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKEAGKPRWDWVAPEPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK VR +QID +K ++++  ++E  + +EG I+ +   +++++VR+
Sbjct: 247 ALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQIVRS 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +     +L RTHGS+LF RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R  
Sbjct: 487 LGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRAD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I P +I++VIG GG  IR + E+T   ++IDDDGTVKIA++     +A
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKA 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
               I  I    EVN+IY G+V +V+DFGAFV   G ++GLVHISQ++ ERV + +D + 
Sbjct: 607 VMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLT 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            G  V VK+++ D +G+I+L+MK ++  
Sbjct: 667 VGQEVQVKVVEIDRQGRIRLTMKDINNT 694


>gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase/polyadenylase [Shewanella sediminis
           HAW-EB3]
 gi|257096709|sp|A8FYR5|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 704

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/689 (50%), Positives = 478/689 (69%), Gaps = 18/689 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TY
Sbjct: 11  FEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTY 70

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D E +P V
Sbjct: 71  AAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDV 130

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +SM+  SAAL +SGLPF GP+  A+V Y +G+YVLNP + +   S LDL V+GTQ AVLM
Sbjct: 131 ISMIGTSAALAISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLDLIVAGTQGAVLM 190

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLE 241
           VE EA  L E+V+L  +++GH++ + VI AI++L K  A +P       V D+   +K++
Sbjct: 191 VESEAAALPEEVMLGGVVYGHDQQQVVISAINEL-KAEASKPAWDWTAPVQDADLVAKIK 249

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +    + + ++  +  I  K  R  Q+  +K        +E+   +  EI  +   ++ +
Sbjct: 250 D----LAEAEMAAAYQIEVKQDRYTQVGVVKSAAKEALLAENPEADLREIDGLLGSLEKQ 305

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ ++    R+DGR+ + VR ++   G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 306 VVRSRIIAGNPRIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQ 365

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            VDS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY
Sbjct: 366 KVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI G
Sbjct: 426 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 485

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + + E
Sbjct: 486 DEDHLGDMDFKVAGTRDGITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMDQAIGE 545

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIAS   A
Sbjct: 546 HRDDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIAS---A 602

Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             +A +E IR I ++    EV  IY G+VV+++DFGAFV     +DGLVHISQ++ ERVA
Sbjct: 603 NGDATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             SD ++ G  V VK+++ D +G+++LSM
Sbjct: 663 NVSDYLQVGQEVKVKVMEVDRQGRVRLSM 691


>gi|190575258|ref|YP_001973103.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
           maltophilia K279a]
 gi|226702693|sp|B2FN86|PNP_STRMK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190013180|emb|CAQ46813.1| putative polyribonucleotide phosphorylase [Stenotrophomonas
           maltophilia K279a]
          Length = 702

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/696 (50%), Positives = 480/696 (68%), Gaps = 12/696 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKN+ Q+I  VM  + +  
Sbjct: 65  KFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLNPDVD 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E   S L+L V+GT +A
Sbjct: 125 GDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTSNA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FSK 239
           VLMVE EA  LSE+V+L A+ FGH E + VI AI++L      +P   ++        S 
Sbjct: 185 VLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALISA 244

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           L+E +   + E  +V     +K  R   I  +KK +    +   ++  WN  E+   F +
Sbjct: 245 LKEAIGPRLGEAFQVR----DKLQRRDAISAIKKDVFETLAGRVAAEGWNPAELSKEFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + +R  +LD KVR+DGR  +TVR I+ + G+L RTHGSSLF RG+TQAIV +TLGT 
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+++G  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P   
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LS
Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GI+A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S++RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K  DV+KEGD V VK+L+ D +G+I+LSMK V++ 
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEG 696


>gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           Cit 7]
          Length = 701

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/681 (50%), Positives = 475/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    ++  S +  E  + 
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +++L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLNTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           NM305]
 gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           NM305]
          Length = 711

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/683 (48%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + + +GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E  + + G+IV +   +++++VR+
Sbjct: 247 ALAEVRLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQIVRS 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS+LF RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R +
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITSEIMRIALNQAKGARMHILGVMEQAIPAPRSE 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA++     + 
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNNAAKR 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             E I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++  RV + +D + 
Sbjct: 607 VMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITEARVERVADYLS 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+L+MK
Sbjct: 667 VGQEVQVKVVEIDRQGRIRLTMK 689


>gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
 gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
          Length = 740

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/687 (49%), Positives = 468/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 37  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 96

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  + +  P 
Sbjct: 97  YAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPD 156

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GTQ+AVL
Sbjct: 157 IVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVAGTQNAVL 216

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VIE I+ L     K     +P   ++   S++ 
Sbjct: 217 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTPLISRVA 276

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I +  R++    +K  R  Q+  +K + ++   +E  + +  EI  +   ++  
Sbjct: 277 ALAEARISDAYRIT----DKQERYAQVGVIKDETIAALLAEDETLDGSEIGDIVHSLEKT 332

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT  D Q
Sbjct: 333 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQ 392

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 393 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 452

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 453 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 512

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK  RLHIL  M + +S 
Sbjct: 513 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQAIST 572

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 573 PRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 632

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 633 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 692

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+++ D +G+++LS+K
Sbjct: 693 DYLQMGQEVPVKVMEVDRQGRVRLSIK 719


>gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans C54]
          Length = 718

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/701 (48%), Positives = 484/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY +NP   + + S LDL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT++AVLMVE EA+QLSE+++L  +++GH + + VI AI +L K   K     +P   D 
Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQPPAKDE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
                L   ++   +E L  +  I EK  R  ++ ++   + +  ++  +   E    +V
Sbjct: 241 A----LIAAVTSAAQEGLNAAYQIREKQARTTKLREVYADVSAKLNAAAAEKGEPAPDAV 296

Query: 295 FED-----IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
             D     +++ +VR  +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+
Sbjct: 297 TVDNILFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQAL 356

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+
Sbjct: 357 VVATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRAL 416

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            P+LP    F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ D
Sbjct: 417 IPLLPAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILD 476

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G  F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRL
Sbjct: 477 GGKFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRL 536

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I D
Sbjct: 537 HILGKMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISD 596

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGT+ IAS   A+ + A+  I  +T   EV ++Y G V++++DFGA V     RDGL+HI
Sbjct: 597 DGTIVIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHI 656

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S+++  R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 657 SEIANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697


>gi|258543760|ref|ZP_05703994.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
           ATCC 15826]
 gi|258520996|gb|EEV89855.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
           ATCC 15826]
          Length = 693

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/691 (50%), Positives = 475/691 (68%), Gaps = 13/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             +   +    + LE+G IARQ+DGAV+     TVVL T V  +++ +GQDFFPLTV+YQ
Sbjct: 3   ENITFSYGKHQVTLESGEIARQADGAVMVNMEGTVVLVTAVAKKTVAEGQDFFPLTVDYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E++YA G+IPGGY RRE RP+ENE L+SR+IDR +RPLF + + NE QVI +VM  + + 
Sbjct: 63  EKSYAAGRIPGGYFRREGRPSENETLVSRLIDRPLRPLFPEGFFNEVQVIASVMSVNPDI 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           SP + +M+ ASAA+ LSG+PF GP+  A+V Y NG Y+LNP   E Q S LDL V+GT+ 
Sbjct: 123 SPDIPAMIGASAAIALSGVPFNGPIGAARVGYKNGAYLLNPSDKELQTSDLDLVVAGTEG 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238
           AVLMVE +AN+L EDV+L A+++GH + + VI AI +LA    K     +P   D    +
Sbjct: 183 AVLMVESQANELPEDVMLGAVMYGHEQMQVVINAIRELAAKAGKPAWDWQPAPADEALIA 242

Query: 239 KLEEEMSQMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           K+ E     +  D  V+ + I +K  R   +  + +   +   SE   WN   + +   D
Sbjct: 243 KVRE-----LAHDKLVAAYQIADKQERQAAVAAVHEAAQAALVSE-DGWNAAAVGNTVHD 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR  +L K+ R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 297 LEYRVVRDRILAKEPRIDGRDTVTVRPITIRTGVLPRVHGSALFTRGETQALVVATLGTG 356

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L+G  R+ FM+HYNF P + GE  R+G+P RREIGHGRLARR +  +LP  +
Sbjct: 357 RDAQIIDALTGEYRDIFMLHYNFPPFSVGETGRVGSPKRREIGHGRLARRGVTAILPPES 416

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 417 TFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPVKTPVAGIAMGLVKEGERFTVLS 476

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+  IM  AL QAK GRLHIL  M++
Sbjct: 477 DILGDEDHLGDMDFKVAGSANGVTALQMDIKIDGITREIMEQALTQAKAGRLHILEIMNQ 536

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +++ R ++ E+ PR   + I  ++I++VIG GG  IR I E TG  + I+DDGT+KIA+
Sbjct: 537 AIAQPRAEISEYAPRFTTLRIDVEKIKDVIGKGGATIRSITETTGTTIEIEDDGTIKIAA 596

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 + AR +I  IT  PE+ +IY  +VVK+ DFGAFV F   ++GLVH+SQ++  RV
Sbjct: 597 VDKTAADDARRIIEEITAEPEIGRIYDAKVVKITDFGAFVAFLPGKEGLVHVSQIAEHRV 656

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
               D +  G  V VKLL+ D +G+++LS+K
Sbjct: 657 NNVEDELSVGQEVKVKLLEIDRQGRVRLSIK 687


>gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 721

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/687 (48%), Positives = 471/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 18  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 494 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 553

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 554 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 613

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 614 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 673

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 674 DYLQMGQEVPVKVLEVDRQGRVRLSIK 700


>gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 706

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT DAVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTADAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  LSED +L A+IFGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEAQILSEDQMLGAVIFGHEQQQVVIENINALVAEVGKPKWDWHAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  S +  EI  +  D++  VVR+
Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLDASEIQDILGDVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690


>gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 711

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/687 (48%), Positives = 471/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 701

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/681 (50%), Positives = 474/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSPSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    ++  S +  E  + 
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 721

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/687 (48%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 18  EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 494 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 553

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 554 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 613

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY  +V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 614 KAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 673

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 674 DYLQMGQEVPVKVLEVDRQGRVRLSIK 700


>gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
 gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
          Length = 712

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/701 (49%), Positives = 486/701 (69%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+ QYVLNP  ++ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDSQYVLNPTREQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA QL EDV+L A++FGH + +  I+AI +L +   K     +P   D 
Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEG 289
                L   ++   +E L  +  I +K  R  ++ ++     +   ++      +  ++ 
Sbjct: 243 A----LIASITAAAQEPLLAAYQIRDKQARSTKLKEVYAATSAKLEADAAAAGTTPADKA 298

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            + +V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+
Sbjct: 299 TVGNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQAL 358

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+
Sbjct: 359 VVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRAL 418

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
              LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +
Sbjct: 419 VACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL+QAK GRL
Sbjct: 479 GNKFAVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALEQAKEGRL 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I D
Sbjct: 539 HILGKMKGAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISD 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HI
Sbjct: 599 DGVVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++  ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 659 SEIVNERVKDINDYLKEGQVVKVKVIQVDEKGRVRLSAKAL 699


>gi|288940255|ref|YP_003442495.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
           DSM 180]
 gi|288895627|gb|ADC61463.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
           DSM 180]
          Length = 699

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/688 (51%), Positives = 476/688 (69%), Gaps = 4/688 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++  + ++LETG IARQ+DGAVL    +TVVL TVV D+     +DF PLTV YQE+T
Sbjct: 9   EFQFGNQTVRLETGEIARQADGAVLVNMDDTVVLVTVVVDKRPGAERDFLPLTVEYQEKT 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+E EIL +R+IDR IRPLF + + NE Q+I  V   +   +P 
Sbjct: 69  YAAGRIPGGFFRREGRPSEGEILTARLIDRPIRPLFVEGFCNEVQIIATVKSLNPAVNPE 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVSGTQDAV 185
           V +++ ASAAL LSG PF GP+  A+V Y NG+Y+LNP L        LDL V+GT  AV
Sbjct: 129 VPALIGASAALALSGAPFNGPIAAARVGYKNGEYILNPALTGLNPDSDLDLVVAGTDKAV 188

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           LMVE EA  LSE+++L A++FGH + + VI+AI +LA    K  +       + +  E  
Sbjct: 189 LMVESEARGLSEEIMLGAVLFGHEQMQVVIQAIRELAAEAGKPAMDWTPHAVNPVLTEAV 248

Query: 246 QMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDIQAKVV 303
           ++   D   + + I EK  R   +   +  +V    + E  +W E ++ +  E +++  V
Sbjct: 249 RLAGGDAIAAAYRIKEKQARYTALGAARTAIVEQLCAGETPAWTESQVKAAIEALESTTV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +L  + R+DGRD++TVR I+ + G+L RTHGS+LF RG+TQA+V+ TLGT  D Q +
Sbjct: 309 RESILAGEPRIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERDSQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L G +R  FM+HYNF P   GE+ R+G+P RREIGHGRLA+R +  V+P   +FPY++
Sbjct: 369 DALEGERREHFMLHYNFPPFCVGEIGRVGSPKRREIGHGRLAKRGVLAVMPSIEEFPYSV 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMA+VCG+SLALMDAGVPI  PVAG+AMGL+K+G+ F +L+DI GDE
Sbjct: 429 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGERFAVLTDIMGDE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GI A+QMD+KI GI+  IM +AL QAK GRLHIL EM+KV+   R
Sbjct: 489 DHLGDMDFKVAGTADGINALQMDIKIEGITREIMEIALAQAKEGRLHILGEMNKVIDSHR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           +++ E  PR+  + I P++IR+VIG GG VIR I E+TGA ++I+DDG VKI S   A  
Sbjct: 549 VEMSEHAPRIIEIKIHPEKIRDVIGKGGSVIRAITEETGATIDINDDGVVKIFSVVKAAG 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A+  IR IT   EV K+Y+G+V ++MDFGAFV     RDGLVHISQ+  ERV   SD 
Sbjct: 609 EEAKRRIRLITADVEVGKVYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQSVSDK 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +KEGD V VK+L+ D +G+I+LSMK V+
Sbjct: 669 LKEGDVVRVKVLEVDKQGRIRLSMKAVE 696


>gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 701

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/681 (50%), Positives = 474/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    ++  S +  E  + 
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans BC]
 gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans K601]
 gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans BC]
 gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans K601]
          Length = 731

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/694 (47%), Positives = 483/694 (69%), Gaps = 6/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QL EDV+L A+++GH + K  I+AI +L +   K   V D +  +K
Sbjct: 183 GTETAVLMVESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDAGKP--VWDWQPEAK 240

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E    +++++ +  LR +     K +R +   +    + +  + +   ++  ++ ++  
Sbjct: 241 DEALIAKVAELGEGTLRAAYQNRNKQLRTQACREAYAAVKAGLTEQGVEFDAVKVDNMLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+A++VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RRE+GHGRLA+RA+   LP  
Sbjct: 361 ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVACLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E++ ++  F P++  M I P++IR+VIG GG  IR + ++TG ++NI++DGT+ IA
Sbjct: 541 EAMGEAKTEISSFAPKLFTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++  A+ + A+  I  IT   E+ K+Y+G V KV+DFGA ++    +DGL+HISQ++ ER
Sbjct: 601 ATEAAKADEAKRRIEEITAEVEIGKVYEGPVTKVLDFGALINLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V +  D ++EG  V VK+L+ DD+G++KLSMK +
Sbjct: 661 VERVGDYLQEGQIVKVKVLETDDKGRVKLSMKAL 694


>gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|81512815|sp|Q8Z3I0|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 711

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/687 (48%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY  +V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|238918428|ref|YP_002931942.1| polynucleotide phosphorylase/polyadenylase [Edwardsiella ictaluri
           93-146]
 gi|259534121|sp|C5BFC1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase [Edwardsiella ictaluri
           93-146]
          Length = 707

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/683 (49%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  ++GQDFFPLTVNYQER 
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERA 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+ PGG+ RRE RP E E L +R+IDR IRPLF + + NE QV+  V+  + + SP 
Sbjct: 68  YAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GT +AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTDNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I  LA    K      + + +  L+  ++
Sbjct: 188 MVESEADLLSEDQMLGAVVFGHEQQQIVIENIKALAAEVGKPRWEWHAPEVNVALQRRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           +M +  L  +  I EK  R  ++D++K+ +++   +E  + + GEI  +   ++  VVR 
Sbjct: 248 EMAEARLGEAYHITEKQARYAKVDEIKESVIADLLAEDDALDAGEISDILGALEKAVVRG 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P    FPYT+R+
Sbjct: 368 LMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++  R  
Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINAPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 548 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 MGQEVAVKVLEVDRQGRVRLSIK 690


>gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12J]
 gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J]
          Length = 724

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/697 (49%), Positives = 486/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W G  +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A+++GH + +  I AI  L +   K      +   ++
Sbjct: 183 GTERAVLMVESEAQQLSEEIMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K + +  +      +  E+ ++  ++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAAKLAEAGVEADGVEVDNILFEL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGSSLF RG+TQA+VV  LGT+ 
Sbjct: 303 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+ PVLP   +
Sbjct: 363 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPPADE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVPI   VAG+AMGL+ + + F +L+D
Sbjct: 423 FGYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIGEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 603 SSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 663 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 699


>gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 722

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/701 (49%), Positives = 480/701 (68%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF       +W    + +ETG IARQS GAV+    +TVV+ TVV  +S K GQ FFPLT
Sbjct: 3   MFKKAVKSFQWGNHQVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + +    + +++AASAAL +SG+PF GPV  A+V Y NGQY+LNP R ++    LDL V+
Sbjct: 123 NPDVPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237
           GTQ AVLMVE EANQLSE+V+L A+++GH++ +  I AI++L     K         KD 
Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINELVAEAGKPEWDWTAAPKD- 241

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
                +++ + +  LR +  I +K  R  ++ ++ K++++    E    +   +  +  +
Sbjct: 242 EPFIAKVTALAEAPLREAYQIRQKGARSDKLKEITKEVMAKLQ-EEGDVDAVAVNDILFE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+L G  R+ FM HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP   
Sbjct: 361 RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F Y++R+VSEITES+GSSSMA+VCG  LA+MDAGVP+   VAG+AMGL+ DG+ F +L+
Sbjct: 421 DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+K+ GI++ IM +AL QAK GRLHIL++M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R +L    PR+    I PD+IR VIG GG  I+ + ++TG  ++I DDGTV IAS
Sbjct: 541 AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S   +  A+  I  IT   EV KIY+G VVK+++FGA V+    +DGL+HIS++S ERV
Sbjct: 601 TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            +  D + EG  V VKLL  D+RG+++LS+K    + G  I
Sbjct: 661 KEVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEGGTI 701


>gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 711

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/687 (48%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL  +GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVAAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 244 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 364 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++ 
Sbjct: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
 gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
          Length = 701

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/681 (49%), Positives = 479/681 (70%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +S    + FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI  V+    ++ P + +M+  
Sbjct: 75  GGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF GP+  A+V +     Y+LNP  ++    SLD+ V+GT+DAVLMVE EA
Sbjct: 135 SAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H E + VI+A+++LA    K     +P   ++   + +  E  + 
Sbjct: 195 KELTEDQMLGAVLFAHEEFQVVIQAVAELAAEAGKPTWDWQPKPENTALLNAIRGEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +L+ ++V+  +++  + +  E+   F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KQDRYARLGELRDQVVAKLANDEGAPSAAEVKEAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP   +FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLV +GD F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM  AL+QA   RL+IL +M++V+++SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQVIAQSRSELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAA+
Sbjct: 551 ANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAK 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS +RV K +DV+KEG
Sbjct: 611 QRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTDVLKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVKVLVLDVDNRGRIKLSIK 691


>gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
 gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
          Length = 747

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/701 (48%), Positives = 483/701 (68%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SGLPF GP+  A+V YING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237
           GT+ AVLMVE EA QL E+V+L A++FGH + K  I+AI  L +   K        +KD 
Sbjct: 183 GTESAVLMVESEAQQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKD- 241

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L  ++ ++ +  LR +     K VR          + +  + +  +++  ++  +  D
Sbjct: 242 EALIAKVVELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFD 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+A +VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT 
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   
Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M +
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ IA+
Sbjct: 542 AMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A+ EAA+  I  IT   E+ KIY+G +VK+++FGA V+    +DGL+HISQ++ ERV
Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
            K +D ++EG  V VK+L+ DD+G++KLSMK + ++  G P
Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPAGMP 702


>gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
 gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
          Length = 711

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/687 (49%), Positives = 468/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  + +  P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GTQ+AVL
Sbjct: 128 IVAMMGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVAGTQNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VIE I+ L     K     +P   ++   S++ 
Sbjct: 188 MVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTALISRVA 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I +  R++    +K  R  Q+  +K + ++   +E  + +  EI  +   ++  
Sbjct: 248 ALAEARISDAYRIT----DKQERYTQVGVIKDETIAALLAEDETLDGSEIGDIVHSLEKT 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 364 NLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK  RLHIL  M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQAIST 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKEAIRRIEEITAEIEVGRVYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+++ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRVRLSIK 690


>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
           568]
 gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
           568]
          Length = 705

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/688 (49%), Positives = 470/688 (68%), Gaps = 12/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    L +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTLTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  + SLDL V+GT  AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKL 240
           MVE EA+ LSED +L A++FGH + + VIE I+ L      AK   + P V ++     L
Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKAKWDWQAPAVNEA-----L 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++++ +  L  +  I EK  R  Q+D +K  +V    ++  + +  EI  +   ++ 
Sbjct: 243 HARVAELAEGRLGDAYHITEKQERYAQVDAIKSSVVETLLAQDETLDVSEIQDILGSVEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 303 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P+   FP
Sbjct: 363 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI 
Sbjct: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S
Sbjct: 483 GDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 543 TPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 603 EKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 663 TDYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
 gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
          Length = 697

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/700 (49%), Positives = 476/700 (68%), Gaps = 14/700 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  V+ T G   VL  +V     K GQDFFPLT
Sbjct: 3   MFNIIRKEFQYGQHTVVLETGRVARQANTVVI-TMGGVQVLVAIVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + + NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAA+ ++G+PF GP+ GA+V  ING+Y+LNP L++  +  LDL V+
Sbjct: 122 DKTMEGDIAAMLGASAAMSIAGVPFAGPIAGARVGLINGEYILNPTLEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVID 233
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A            P V +
Sbjct: 182 GTEAAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAP-VKN 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIV 292
            +   KL++     I E   ++     K  R   +D L  + V+ F  E+       E+ 
Sbjct: 241 EELLGKLKDAFEAKISEAYTIAV----KQDRYAALDALHVEAVAQFVPENDETGIAAEVD 296

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +FED++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  
Sbjct: 297 ELFEDLKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTT 356

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  V
Sbjct: 357 TLGNTRDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAV 416

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ 
Sbjct: 417 LPAADRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGER 476

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM  AL QA  GR+HIL
Sbjct: 477 FAVLSDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEAALNQAYAGRMHIL 536

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           NEM++V+S +R ++    P  +++ I PD+IR+VIG GG  IR I E+T A ++I+D+GT
Sbjct: 537 NEMNQVISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGT 596

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V++   + A   AA   I+++T   E   IY G+V+++++FGAFV+     DGL+HISQ+
Sbjct: 597 VRVFGETKAAAAAAVAKIQALTAEIEPGTIYVGKVIRIVEFGAFVNILPGTDGLLHISQI 656

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           S ER+A  +DV+KEG  + V++ D D+RG+IKL+MK ++Q
Sbjct: 657 SNERIANVADVLKEGQEIKVQVADVDNRGRIKLTMKDIEQ 696


>gi|24372791|ref|NP_716833.1| polynucleotide phosphorylase/polyadenylase [Shewanella oneidensis
           MR-1]
 gi|24346879|gb|AAN54278.1|AE015565_1 polyribonucleotide nucleotidyltransferase [Shewanella oneidensis
           MR-1]
          Length = 702

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/690 (50%), Positives = 482/690 (69%), Gaps = 20/690 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 12  EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   +KNE QVII V+  D E  P ++
Sbjct: 72  AGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 131

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +   S L+L V+GT+ AVLMV
Sbjct: 132 SMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGTESAVLMV 191

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL--EEEMSQ 246
           E EA  L E+V+L ++++GH++ + VI+AI++  K  A +P    + D++    +E +  
Sbjct: 192 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKP----TWDWTAPVEDEALVA 246

Query: 247 MIKEDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            IKE L  + FI    ++ KQ     +  +K        + +   +  E+ ++   ++ K
Sbjct: 247 QIKE-LAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVDLREVDNLLGSLEKK 305

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L    R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 306 VVRGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQ 365

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY
Sbjct: 366 KIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI G
Sbjct: 426 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 485

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +  
Sbjct: 486 DEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGS 545

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+  
Sbjct: 546 HRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG- 604

Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             EA +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA
Sbjct: 605 --EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             SD ++    V VK+++ D +G+++LS+K
Sbjct: 663 NVSDHLELNQEVTVKVMEVDRQGRVRLSIK 692


>gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
 gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
          Length = 684

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/678 (49%), Positives = 468/678 (69%), Gaps = 10/678 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA GKIPGG+ RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSC 256
            A++FGH + + VI+ I+ L K   K     +P  ++      L   ++ + +  L  + 
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LNARVAALAESRLSDAY 237

Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316
            I +K  R  Q+D +K + ++   +E  + +  E+  +   I+  VVR+ +L  + R+DG
Sbjct: 238 RITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDG 297

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F+ 
Sbjct: 298 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLF 357

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSS
Sbjct: 358 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSS 417

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
           SMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+
Sbjct: 418 SMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGS 477

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
             GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+  +
Sbjct: 478 RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTI 537

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT  
Sbjct: 538 KINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAE 597

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+
Sbjct: 598 IEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 657

Query: 677 FDDRGKIKLSMKVVDQNT 694
            D +G+++LS+K   + T
Sbjct: 658 VDRQGRVRLSIKEATEQT 675


>gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           uraniireducens Rf4]
 gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 696

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/687 (48%), Positives = 475/687 (69%), Gaps = 9/687 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V++E+ GR + +ETG++A+Q+ GAV+ + G+T+VL T V  ++ K+GQDFFPLTVNYQE+
Sbjct: 5   VQVEFGGRTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTVNYQEK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGG+ +RE+RP++NE L  R+IDR IRPLF + + N+TQ++  V+  D ++ P
Sbjct: 65  AYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            ++SMV ASAALM+S +PF+GP+ G +V  ++G+++ NP  DE ++  +++ V+ ++DAV
Sbjct: 125 GILSMVGASAALMVSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSDIEIVVAASKDAV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           +MVE  A ++SE+ +L+AI FGH   +P++ A  +L   C+K  +         + EE+ 
Sbjct: 185 IMVEGSAAEVSEEDMLEAIFFGHAAIQPLLAAQEEL---CSKAGVAKREVPPPAVNEELK 241

Query: 246 QMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +K+     ++ +  I  K  R   ID +  + ++  ++E    ++ +I +   D + +
Sbjct: 242 ANVKDIAYARMKEAVRIKSKVERHNSIDAISAETLAALATEFEGCDK-QIKAFLGDFEYE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +L    R+DGRD++T+R I+ +V LL R HGS+LF RG+TQ++V  TLGT  DEQ
Sbjct: 301 LVREHILKDGERIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  +  F++HYNF P + GE S    P RREIGHG LA RA+  VLP+   FPY
Sbjct: 361 RIDSLFGESKKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALARVLPKHDDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+I ES+GSSSMA+VCG S+++MDAG+PI  PVAGIAMGL+K+G+DF ILSDI G
Sbjct: 421 TIRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGEDFAILSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM +AL+QA  GRLHIL  M+  +  
Sbjct: 481 DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMGIALKQALEGRLHILGRMADTIKT 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           S+  L  + PR+  + +  D+IR+VIG GGK IRGI E TG  ++IDD G + IAS+  A
Sbjct: 541 SKSDLSTYAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKINIASTDKA 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MIR +T   E  K+Y G V KVM+FGAFV      DGLVHIS+L TERV   +
Sbjct: 601 ACDLAIKMIRDLTAEAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISELDTERVKNVT 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D++KEGD V VK +  D +GKIKLS K
Sbjct: 661 DILKEGDKVLVKCIGIDKQGKIKLSRK 687


>gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
           4582]
 gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
           4582]
          Length = 706

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/683 (49%), Positives = 470/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTEGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K      +   ++ L   ++
Sbjct: 188 MVESEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAEVGKPKWDWQAPAVNETLHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K+ +++   ++  S + GEI  +   ++  VVR+
Sbjct: 248 ELAEGRLGDAYHITEKQQRYAQVDAIKEDVIAALLAQDESLDAGEIQDILGSVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P+   FPYT+R+
Sbjct: 368 LMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + 
Sbjct: 548 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKF 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+L+ D +G+++LS+K
Sbjct: 668 MGQEVPVKVLEVDRQGRVRLSIK 690


>gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1]
 gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens
           CN-32]
 gi|187611297|sp|A4Y9B5|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611299|sp|A1RGY0|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1]
 gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
           CN-32]
 gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
           200]
          Length = 699

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/689 (49%), Positives = 481/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + + + S L+L V+GT  AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAGTASAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242
           E EA  L E+V+L ++++GH++ + VI AI++  K  A +P+      V D    ++++E
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVINAIAEF-KAEAGKPMWDWTAPVQDETLVAQIKE 247

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
                + +  ++      K  R  Q+  +K        + + + +  E+ ++   ++ KV
Sbjct: 248 LAEAGLGDAYKIQV----KQDRYAQVAVVKAATKEALLASNPNIDLREVDNLLGSLEKKV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY+
Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 484 EDHLGDMDFKVAGTRGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTV+IASS+   
Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVRIASSNG-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 602 -EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 661 VSDHLELNQEVAVKVMEVDRQGRVRLSIK 689


>gi|187611309|sp|Q8EHL1|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 699

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/690 (50%), Positives = 482/690 (69%), Gaps = 20/690 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   +KNE QVII V+  D E  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +   S L+L V+GT+ AVLMV
Sbjct: 129 SMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGTESAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL--EEEMSQ 246
           E EA  L E+V+L ++++GH++ + VI+AI++  K  A +P    + D++    +E +  
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEF-KAEAGKP----TWDWTAPVEDEALVA 243

Query: 247 MIKEDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            IKE L  + FI    ++ KQ     +  +K        + +   +  E+ ++   ++ K
Sbjct: 244 QIKE-LAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVDLREVDNLLGSLEKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L    R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 303 VVRGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY
Sbjct: 363 KIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI G
Sbjct: 423 SVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +  
Sbjct: 483 DEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGS 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+  
Sbjct: 543 HRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG- 601

Query: 602 EIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             EA +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA
Sbjct: 602 --EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             SD ++    V VK+++ D +G+++LS+K
Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSIK 689


>gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato K40]
 gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 701

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/681 (50%), Positives = 473/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S + GE+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSAGEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
           + V V +LD D+RG+IKLS+K
Sbjct: 671 EEVEVLVLDVDNRGRIKLSIK 691


>gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans
           SPH-1]
 gi|226702646|sp|A9BNB8|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans
           SPH-1]
          Length = 753

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/696 (47%), Positives = 485/696 (69%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   IFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A SAAL +SG+PF GP+  A+V +ING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIAALIATSAALSVSGIPFNGPIGAARVGFINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKD 236
           GT+ AVLMVE EA QL EDV+L A++FGH + +  I+AI +L +   K P+   V  +KD
Sbjct: 183 GTEAAVLMVESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREAGK-PVWDWVAPAKD 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
             +L  +++ +  E LR +  I  K  R +   +    + +  +++   ++  ++  +  
Sbjct: 242 -EELIAKVAALGDEALRTAYQIRNKQSRTQACREAYAAVKAGLTAQGVEFDGVKVEGMLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+A++VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP  
Sbjct: 361 ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG +++I +DGT+ IA
Sbjct: 541 EAMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A+ + A+  I  IT   E+ KIY+G V K++DFGA V+    +DGL+HISQ++ ER
Sbjct: 601 SSDAAKADEAKRRIEEITAEVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V + +D ++EG  + VK+++ D++G++KLS+K + +
Sbjct: 661 VERVADYLQEGQIIKVKVMETDEKGRVKLSLKALTE 696


>gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 733

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/714 (49%), Positives = 491/714 (68%), Gaps = 18/714 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + +ETG IARQ+ GAV+ T G TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA G+IPGGY +RE +PTE E L SR+IDR +RPLF + + NE QVII+V+  
Sbjct: 61  VDYVEKSYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E  P + SM+ +SAAL +SG+PF+GP+  A+V YINGQYVLNP   + + S +DL V+
Sbjct: 121 DPEIDPDIASMIGSSAALSISGVPFDGPIGAARVGYINGQYVLNPSESQIKDSDMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L  ++FGH + +  I AI  L K   K     D     K
Sbjct: 181 GTEQAVLMVESEAKQLSEEIMLGGVVFGHEQLQLAINAIHDLVKQAGKPEW--DWTPAPK 238

Query: 240 LEEEMSQMIKEDLR--VSCF-IPEKYVRCKQIDDLKKKMVSYFS-----SEHSSWNEGEI 291
            E+ +SQ+ +  L      F I EK +R  ++ ++  ++    +     S   + +E EI
Sbjct: 239 NEDLISQVREYALAGLTEAFGIREKQLRSTKLKEVSTQVKESLAKKAEESGTDAPDEVEI 298

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            ++  D+++ +VR  +L+ + R+DGRD+ +VR IS ++G+L RTHGS+LF RG+TQA+V+
Sbjct: 299 DNIIFDLESSIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVI 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT++DEQ VDS+ G  R  FM+HYN  P ATGEV R G+P RREIGHGRLA+RA+  
Sbjct: 359 ATLGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALIA 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+K+G+
Sbjct: 419 TLPNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGN 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQAKEGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + +S SR +L  F PR+  + I P+++R+VIG GG  IR + E+TG ++ I DDG
Sbjct: 539 LGKMKEAISGSRNELSSFAPRMISLNINPEKVRDVIGKGGATIRTLTEETGCQIEITDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + IASS L   + A+  I  +T   E+ K+Y+G V+K++DFG  +     +DGL+HIS+
Sbjct: 599 HITIASSDLEAAQEAQRRIEELTAEVEIGKVYEGTVIKLLDFGGVLQILPGKDGLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-------VVDQNTGKPI 698
           ++  R+   +DV+  G  V VK+++ DDRG+I+LS K       +VD N  +P+
Sbjct: 659 IANFRIKDINDVLSIGQKVNVKVIESDDRGRIRLSAKAIGGIPGLVDPNAKEPV 712


>gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
           43969]
 gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
           43969]
          Length = 706

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  S N  EI  +  D++  VVR+
Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690


>gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 796

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/705 (50%), Positives = 487/705 (69%), Gaps = 9/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ+ GAV+ +Y  T VLATVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRRSAEWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQ-GSLDLF 177
           D  + P V ++V A+AAL +SG+PF G VVGA+V Y+   G+Y+LN   DE    SLDLF
Sbjct: 120 DTVTPPEVTALVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +SG +D+VLMVE EA++LSE  +L AI FGH  C+ VI  I + +    + PI     D 
Sbjct: 180 LSGNEDSVLMVESEASELSESQMLGAITFGHQHCQEVINLIKEFSHESGQTPIDFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIVS 293
           S L  ++    KED  ++     K  R  ++++L+ K++S  + ++S+     ++ +IV+
Sbjct: 240 SSLVSDIESSYKEDFSLAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDIVT 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +  +  +VR+ ++D   R+DGR  + +RDI  +V +L + HGS+LF RG+TQA+VV  
Sbjct: 300 ALKTFERSLVRSKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTA 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI  VL
Sbjct: 360 LGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVL 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+ D F
Sbjct: 420 PEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRF 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           IILSDI GDEDHLG MDFKVAGT  G+TA+QMDMKI GI  +I+  AL QAK GR+HIL+
Sbjct: 480 IILSDILGDEDHLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHILS 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+ V+ ESR ++    PR+E + I  D+IRNVIG GGK IR I E+TGAK+ I  DGTV
Sbjct: 540 KMNAVIQESRNRIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   +E A+ MI  I   PE+ K+++G VV++M FGAFV F G + GLVHIS++ 
Sbjct: 600 MIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIR 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            E ++    V+   D V V ++   DR  I+LSM+ VDQ +G+PI
Sbjct: 660 NEHISSVGSVISLNDKVKVLVIGI-DREHIQLSMRRVDQESGEPI 703


>gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus
           DSM 2379]
 gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus
           DSM 2379]
          Length = 706

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/690 (49%), Positives = 469/690 (67%), Gaps = 11/690 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V++E+ G+ + + TG++A+Q++GAV+   G+T+VL T V  +  K+GQDFFPLTVNY 
Sbjct: 3   HVVDVEFGGKMVTISTGKMAKQANGAVVVKSGDTMVLVTAVAQKEAKEGQDFFPLTVNYT 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPG + RRE+RP++ E L  R+IDR IRPLF + + N+TQ+I  V+  D + 
Sbjct: 63  EKAYAGGKIPGSFFRREARPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDH 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P ++SM+ ASAAL +S +PF+GP+ G +V  ++G+ + NP  DE + S +++ V+ ++D
Sbjct: 123 DPRILSMLGASAALEVSDIPFQGPIAGVKVGRVDGRLICNPTADELELSDMEIVVAASRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKE---PIVIDSKDFS 238
           A++MVE EA  +SED +LDAI FGH   +PV+EA  KL ++   AK    P V+D    +
Sbjct: 183 AIIMVEGEARFVSEDDMLDAIFFGHAAVQPVLEAQEKLKQLAGVAKRDVPPPVVDQALLA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++ E    +  E +  +  I  K  R  QID +  +  +  ++E    NE +I +   D+
Sbjct: 243 RVRE----LASERMSAAVKIKSKQERHNQIDLITAETTASLAAEFEG-NEKQIRAFLGDL 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + VR  +L+  VR+DGRD+ T+R I+ + GLL RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 298 EYECVRADVLNSGVRIDGRDTVTIRPIATEAGLLPRTHGSALFTRGETQALVVTTLGTSS 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +DSL G  R  F++HYNF P + GE S    P RREIGHG LA RA+  +LP+   
Sbjct: 358 DEQRMDSLYGEYRKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALSAILPKHDD 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSE  ES+GSSSMA VCG  ++LMDAGVPIS PVAGIAMGL+K+G+   ILSD
Sbjct: 418 FPYTIRIVSETLESNGSSSMAAVCGGCMSLMDAGVPISAPVAGIAMGLIKEGEKVAILSD 477

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KIGG++  IM  AL QA+ GRLHIL +M++ 
Sbjct: 478 ILGDEDHLGDMDFKVAGSSDGITALQMDIKIGGVTREIMQKALAQAREGRLHILGKMAET 537

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L   R ++  F PR+  + +  D+IR+VIG GGK IR I E TG  V+I+D G + IAS+
Sbjct: 538 LGAPRPEMSSFAPRITTIWVKTDKIRDVIGTGGKNIRNITETTGVTVDIEDTGRINIAST 597

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S    + A +MIR +TD  E  K+Y G V K+MDFGAFV      DGLVHIS+L T+RV 
Sbjct: 598 SKEACDLAIQMIRGLTDEAEEGKLYMGIVKKIMDFGAFVEILPGTDGLVHISELDTKRVK 657

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             ++V+ EGD V VK +  D  GK+KLS K
Sbjct: 658 TVTEVLNEGDRVLVKCIGVDKNGKVKLSRK 687


>gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
 gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
          Length = 747

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/701 (48%), Positives = 484/701 (69%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIAAMIATSAALAVSGIPFSGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237
           GT+ AVLMVE EA QL E+V+L A++FGH + K  I+AI  L +   K        +KD 
Sbjct: 183 GTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKD- 241

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L  +++++ +  LR +     K VR          + +  + +  +++  ++  +  D
Sbjct: 242 EALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFD 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+A +VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT 
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   
Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M +
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ IA+
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A+ EAA+  I  IT   E+ KIY+G +VK+++FGA V+    +DGL+HISQ++ ERV
Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
            K +D ++EG  V VK+L+ DD+G++KLSMK + ++  G P
Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPAGMP 702


>gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
           29755]
 gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           SH0165]
 gi|254782722|sp|B8F492|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
           29755]
 gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           SH0165]
          Length = 709

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/683 (48%), Positives = 472/683 (69%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  AV+A+  +T V  TVV  + + +GQDFFPLTV+YQERT
Sbjct: 7   QFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + SP 
Sbjct: 67  YAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP   E + S LDL V+GT  AVL
Sbjct: 127 LVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDKAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE EA+ L+E+ +L A++FGH + + VIE I +  K   K     +  +  + L  ++ 
Sbjct: 187 MVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLINKVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            + +  L  +  I EK  R +QID +K  +++  ++E  + + G+IV +   +++++VR+
Sbjct: 247 ALAEARLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQIVRS 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            ++  + R+DGR  +TVR +    G+L RTHGS+LF RG+TQA+ V TLGT  D Q +D 
Sbjct: 307 RIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDE 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY +R+
Sbjct: 367 LTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDH
Sbjct: 427 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +   R +
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRSE 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA++     + 
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNNAAKR 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             E I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++  RV + +D + 
Sbjct: 607 VMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVADYLS 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ + +G+I+L+MK
Sbjct: 667 VGQDVQVKVVEIERQGRIRLTMK 689


>gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
 gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
          Length = 706

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/687 (48%), Positives = 471/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K     +P V++   +++++
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEVLYARVK 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E  S  + +  R++    EK  R  Q+D +K  ++    ++  + +  EI  +   ++  
Sbjct: 248 ELASARLGDAYRIT----EKQERYTQVDAIKANVIEALLAQDETLDTSEIQDILGSVEKD 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 364 NIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI G
Sbjct: 424 TIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK  RLHIL  M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQAIST 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++   
Sbjct: 544 PRGDISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTIKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+++ D +G+I+LS+K
Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRIRLSIK 690


>gi|120556251|ref|YP_960602.1| polynucleotide phosphorylase/polyadenylase [Marinobacter aquaeolei
           VT8]
 gi|187610283|sp|A1U5Z6|PNP_MARAV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120326100|gb|ABM20415.1| Polyribonucleotide nucleotidyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 722

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/693 (51%), Positives = 474/693 (68%), Gaps = 12/693 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E  G    LETGRIARQ+ GAVL + G+T VL TVV  +  K GQ FFPLTVNYQE+TY
Sbjct: 26  FEMGGETFTLETGRIARQATGAVLVSTGDTAVLGTVVGAKEPKPGQGFFPLTVNYQEKTY 85

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L SR+IDR IRPLF   Y NE QV++ VM       P +
Sbjct: 86  AAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTVMSASKNHDPDI 145

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQDAVL 186
            +M+AASAAL +SG+PF+GP+  A+V Y N + Y LNP  +E   SL D+ V+GT +AVL
Sbjct: 146 AAMIAASAALAISGIPFDGPIGAARVGYTNEKGYFLNPTFEELSTSLLDMVVAGTDEAVL 205

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  L+ED +L A++FGH E +  I AI + A    K     +P   +++  + ++
Sbjct: 206 MVESEAKGLTEDQMLGAVLFGHQEMQTAITAIKEFAAENGKPRWEWQPEAENTELLNAIK 265

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQA 300
            E    I+E    +  I +K  R +++ ++K   V   + E       E V   F  ++ 
Sbjct: 266 AEFGGAIEE----AYAIRDKMARYERLGEIKSAAVEKLAGEEEGQPSEEEVKKYFGKVEK 321

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  +++ K R+DGRD++TVR I  +VG+L   HGS+LF RG+TQAIV  TLGT  D 
Sbjct: 322 SVVRLQVIEGKPRIDGRDNKTVRPIKVEVGVLPSVHGSALFTRGETQAIVTATLGTTRDV 381

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G +++ F+ HYNF P + GE  RMG+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 382 QIIDALEGERKDPFLFHYNFPPYSVGEAGRMGSPGRREIGHGRLAKRGVAAVMPTIEEFP 441

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+GD F +L+DI 
Sbjct: 442 YAIRAVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDKFAVLTDIL 501

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA   RLHIL+EM+KV++
Sbjct: 502 GDEDHLGDMDFKVAGTKEGVTALQMDIKIQGITDEIMEIALEQANAARLHILDEMNKVIA 561

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R +L +  P +  + I PD+IR+VIG GG  IRGI ++TGA +++DDDG VKI + + 
Sbjct: 562 EPRAELSDRAPSITTIKIHPDKIRDVIGKGGATIRGICDETGASIDLDDDGNVKIYADNA 621

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  +AA   ++ IT   EV  IYKG+V +++DFGAFV+    +DGLVHISQ+S  R+   
Sbjct: 622 AAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISERRIENV 681

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +D + EG  V VK+LD D+RG++KLSMK V + 
Sbjct: 682 TDELSEGQEVLVKVLDVDNRGRVKLSMKEVKEG 714


>gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 701

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/681 (50%), Positives = 472/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
           43970]
 gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
           43970]
          Length = 706

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/683 (49%), Positives = 468/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  S N  EI  +  D++  VVR+
Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690


>gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
 gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
          Length = 712

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/687 (48%), Positives = 472/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GTQ+AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVAGTQNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA+ L+ED +L A++FGH++ + VIE I+ L     K     +P   +    +++ 
Sbjct: 188 MVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPANDPLIARVA 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I +  R++    +K  R  Q+  +K + ++   +E  + ++ EI  +   ++  
Sbjct: 248 ALAEARISDAYRIT----DKQERYAQVGVIKDETIAALLAEDETLDDAEIGDIVHSLEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 364 SLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQEDFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIST 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKEAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli]
          Length = 711

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/689 (48%), Positives = 471/689 (68%), Gaps = 14/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TL T  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLA MDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLASMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690


>gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
 gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
          Length = 747

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/702 (48%), Positives = 484/702 (68%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--RLDEDQGSLDLFV 178
           + E    + +M+A SAAL +SGLPF GP+  A+V YING+YVLNP   L +D   +DL V
Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDS-QMDLVV 181

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKD 236
           +GT+ AVLMVE EA QL E+V+L A++FGH + K  I+AI  L +   K        +KD
Sbjct: 182 AGTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKD 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L  +++++ +  LR +     K VR          + +  + +  +++  ++  +  
Sbjct: 242 -EALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+A +VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP  
Sbjct: 361 ERDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L
Sbjct: 421 EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ IA
Sbjct: 541 EAMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++  A+ EAA+  I  IT   E+ K+Y+G +VK+++FGA V+    +DGL+HISQ++ ER
Sbjct: 601 ATDGAKAEAAKLRIEQITAEVEIGKVYEGPIVKILEFGALVNLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
           V K +D ++EG  V VK+L+ DD+G++KLSMK + ++  G P
Sbjct: 661 VEKVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPAGMP 702


>gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae 642]
          Length = 701

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/681 (50%), Positives = 472/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    ++    +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLGAIRSEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 717

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/697 (49%), Positives = 486/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  + +   K      +   ++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDMVRDGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVDADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQMVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|71064655|ref|YP_263382.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter arcticus
           273-4]
 gi|123761801|sp|Q4FVL0|PNP_PSYA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71037640|gb|AAZ17948.1| putative polyribonucleotide nucleotidyltransferase [Psychrobacter
           arcticus 273-4]
          Length = 700

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/700 (49%), Positives = 477/700 (68%), Gaps = 9/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + +ETGRIARQ++  ++   G TV++A VV   + K+GQ+FFPLT
Sbjct: 3   MFNTIKREFQYGNQQVVIETGRIARQANSILVHMGGVTVLVAAVVKSDA-KEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE R +E+E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D   S  + +++ ASAAL +S  PF GPV  A+V +ING+YVLNP L+E  +  LDL V+
Sbjct: 122 DKTQSADIAALIGASAALAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDF 237
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ +A     AK+      +D 
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHQQQQIVIDNIASMAAEIGTAKQQYTAPVRD- 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293
             LE  M +     +  +  I +K  R  +++++K   +   + +  S +  + VS    
Sbjct: 241 QALETGMKEQFGAQVSDAYTITDKQARYSKLNEIKDAAIVALAGDAESESYSDTVSELKE 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ D++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+V  T
Sbjct: 301 IYNDLKYRTVRDNILSGKPRIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D   +DSL+GT R+ FM+HYNF   + GE  R G P RREIGHGRLARR +  +L
Sbjct: 361 LGNTRDVNMIDSLAGTIRDHFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAML 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI  PVAGIAMGLVK+G+ F
Sbjct: 421 PDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAG+  GITA+QMD+KI GI+ +IM  AL+QA  GR+HIL+
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGSKDGITALQMDIKIEGITPDIMEQALKQAHAGRIHILD 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M+KVL ESR ++    P   ++ I PD+IR+VIG GG  IR + E+TGA ++IDD GT+
Sbjct: 541 AMNKVLPESRTEINAHAPNYAVIEINPDKIRDVIGKGGATIRQLTEETGAVIDIDDAGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +I   + A  +AA   I +IT   EV K Y+G V +++DFGAFV+     DGLVHISQ++
Sbjct: 601 RIFGENKAATKAAIAKIEAITAEVEVGKTYEGTVARIVDFGAFVNVLPNTDGLVHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ERV   SD +KEG  V V + D D+RG+IKL+MK ++Q+
Sbjct: 661 DERVENVSDYLKEGQIVKVLVQDVDNRGRIKLTMKGIEQS 700


>gi|262401655|ref|ZP_06078221.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
 gi|262352072|gb|EEZ01202.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
          Length = 709

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI+ V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 701

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/681 (49%), Positives = 472/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GP+  A+V +     Y+LNP  ++    SLD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI A+ +LA   AK      P    ++    +  E  + 
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQAEATELLGAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  S E    +  ++ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           E  P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAAR
Sbjct: 551 ENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium
           petroleiphilum PM1]
 gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein
           [Methylibium petroleiphilum PM1]
          Length = 751

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/696 (48%), Positives = 485/696 (69%), Gaps = 10/696 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + LETG IARQS GAV+     TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKITKTFQWGQHTVTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E+S  + +++ +SAAL +SG+PF GP+  A+V YING+YVLNP   +   S LDL V+
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPIGAARVGYINGEYVLNPGPTQLADSKLDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDS 234
           GT+ AVLMVE EA+QL ED++L  ++FGH +    +  I++L +   K      P   D 
Sbjct: 183 GTEAAVLMVESEADQLPEDIMLGGVVFGHEQGNIAVRVINELVREAGKPEWQWTPPAKDE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              +K+    + + +  LR +  I  K  R +       ++++  ++E ++ ++ ++ ++
Sbjct: 243 DFIAKV----NGLGEAKLRAAYQIRSKQDRTQATRAAYAEVLAALAAEGAAVDKVKVENL 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             DI+AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TL
Sbjct: 299 LFDIEAKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D+L+G   + FM HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP
Sbjct: 359 GTERDTQRIDALAGEFEDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +  +F Y +R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+KDG+ F 
Sbjct: 419 KKDEFAYAIRVVSEITESNGSSSMASVCGGCLSMMDAGVPLKAHVAGIAMGLIKDGNRFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +
Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + L  ++ +L  F PR+ +M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ 
Sbjct: 539 MVEALGGAKEELSVFAPRLYVMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTIT 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS+   + +AA + I  IT   E+ K+Y+G V K++DFGA V+    +DGL+HISQ++ 
Sbjct: 599 IASTDGDKAQAAMKRIEEITAEAEIGKVYEGPVTKILDFGALVNILPGKDGLLHISQIAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +RV K +D + EG  V VK+L+ D++G+IKLS+K +
Sbjct: 659 QRVEKVTDFLTEGQIVKVKVLETDEKGRIKLSLKAL 694


>gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma
           phagocytophilum HZ]
 gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma
           phagocytophilum HZ]
          Length = 838

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/708 (49%), Positives = 470/708 (66%), Gaps = 17/708 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+ GAV+  YG T VLATVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKS-KEAVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+ +RE +P++ E LISR+IDRSIRPLF   + +E  V+ N++ +
Sbjct: 60  VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177
           D  S P  V+++ ASAAL +SG+PF  PV GA++ YI G+  Y+LNP  DE    +LD+F
Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA---KMCAKEPIVIDS 234
            + T  ++LMVE EA++L+E  +L A+ FGH  C+ +I+ I + A   + CA    V   
Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFV--P 237

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----- 289
            D S + + +    KE   V+    EK  R  ++D ++  +      +  S +EG     
Sbjct: 238 CDLSTIIDSIGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYI 297

Query: 290 --EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             +IV   +  +  +VR  +L+ K R+DGR  + +R+I  +V L+ + HGS+LF RGDTQ
Sbjct: 298 AQDIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQ 357

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           A+V+  LGT +DEQ VD   G +R  F++HYNF P A GE S +  P RREIGHG+LA R
Sbjct: 358 ALVITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWR 417

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AIHPVLP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+
Sbjct: 418 AIHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLI 477

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+GD + ILSDI GDED+LG MDFKVAGT  GITA+QMDMK+ GI   ++  AL QAK G
Sbjct: 478 KEGDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEG 537

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R  I+ +M +V+ ESR  + E  PR+E M I   +I+NVIG GGK +R I E+TGAK+ I
Sbjct: 538 RFFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEI 597

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
             DGTV I +     IE+A++MI  I   PEV KIY G+V ++  +GAFV F GAR GLV
Sbjct: 598 SQDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLV 657

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           HIS++  E +   +DV+  GD V V ++D  D+  I+LSM+ +DQ TG
Sbjct: 658 HISEIRNEHINAVADVLAVGDKVKVLVIDM-DKDHIQLSMRRIDQETG 704


>gi|261212242|ref|ZP_05926528.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
 gi|260838850|gb|EEX65501.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
          Length = 709

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 479/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI+ V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A      +   + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPVEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont]
          Length = 710

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/687 (48%), Positives = 472/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKAGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GTQ+AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVAGTQNAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           +VE EA+ L+ED +L A++FGH++ + VIE I+ L     K     +P   +    +++ 
Sbjct: 188 IVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPANDALIARVA 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I +  R++    +K  R  Q+  +K + ++   +E  + ++ EI  +   ++  
Sbjct: 248 ALAEARISDAYRIT----DKQERYAQVGVIKDETIAALLAEDETLDDAEIGDIVHSLEKN 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT +L+ + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 364 NLDELMGERTDSFLFHYNFPPFSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQDAFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIST 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRQEISEFAPRIYTIKINTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGL 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+++ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRVRLSIK 690


>gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 701

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|149375751|ref|ZP_01893519.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Marinobacter algicola DG893]
 gi|149359876|gb|EDM48332.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Marinobacter algicola DG893]
          Length = 714

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/692 (50%), Positives = 470/692 (67%), Gaps = 12/692 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E  G+ + +ETGRIARQ+ G+VL T  +  VL TVV  +  K GQ FFPLTVNY E+TY
Sbjct: 17  FELGGKTVTIETGRIARQATGSVLVTVDDISVLGTVVAAKEAKPGQPFFPLTVNYFEKTY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE RP+E E L SR+IDR IRPLF K + NETQVI  VM       P +
Sbjct: 77  AVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGFMNETQVITTVMSSSKNQDPDI 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQDAVL 186
            +M+AASAAL +SG+PF+GP+  ++V Y N + Y LNP  +E + SL D+ V+GT+DAVL
Sbjct: 137 AAMLAASAALSISGIPFDGPIGASRVAYTNERGYFLNPTFEELETSLLDMVVAGTEDAVL 196

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  L+ED +L A++FGH E +  + AI + A    K     +P   +++  + ++
Sbjct: 197 MVESEAKGLTEDQMLGAVLFGHQEMQTAVTAIKEFAAEVGKPRWEWQPEAENTELLNAVK 256

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVFEDIQA 300
            + S     D+  +  I +K  R  ++ ++K   V   + E      E E+   F  ++ 
Sbjct: 257 ADFSA----DIEQAYGIRDKMERYARLSEIKSAAVEKLAGEEEGQPAEDEVKKYFAKVEK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  ++D K R+DGRD++TVR I  +VG+L  THGS+LF RG+TQAIV  TLGT  D 
Sbjct: 313 TIVRQQVIDGKPRIDGRDNKTVRPIEVEVGVLPSTHGSALFTRGETQAIVTTTLGTARDM 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G +++ F+ HYNF P + GE  R+G P RRE+GHGRLA+R +  V+P   +FP
Sbjct: 373 QIIDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVAAVMPTMEEFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+GD F +L+DI 
Sbjct: 433 YTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDQFAVLTDIL 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QA   RLHIL EM+KV+S
Sbjct: 493 GDEDHLGDMDFKVAGTSDGITALQMDIKIQGITDEIMEIALDQANAARLHILGEMAKVIS 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L    P +  + I P++IR+VIG GG  IR I ++TGA +++DDDG VKI + + 
Sbjct: 553 APRKELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICDETGASIDLDDDGNVKIYADNQ 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
               AA + +  IT   EV  IY G+V +++DFGAFV+    +DGLVHISQ+S  R+   
Sbjct: 613 DAANAAMKRVMEITAEIEVGAIYSGRVERIVDFGAFVNILPGKDGLVHISQISERRIENV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +D + EG  V VK+LD D+RG++KLSMK V +
Sbjct: 673 TDELSEGQEVLVKVLDVDNRGRVKLSMKEVKE 704


>gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 701

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYTRLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
 gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
          Length = 716

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/688 (49%), Positives = 468/688 (68%), Gaps = 12/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 18  KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE +  SLDL V+GT  AVL
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKISSLDLVVAGTAGAVL 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKL 240
           MVE EA+ LSED +L A++FGH + + VIE+I+ L     K       P+V      + L
Sbjct: 198 MVESEADVLSEDQMLGAVVFGHQQQQVVIESINSLVAEAGKPKWDWQAPVV-----NAAL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++++ +  L  +  I EK  R  Q+D +K  +V     +  + +  EI  +   ++ 
Sbjct: 253 HARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLVQDETLDASEIQDILSSVEK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 313 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P+   FP
Sbjct: 373 QNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKLEDFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI 
Sbjct: 433 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNFVVLSDIL 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S
Sbjct: 493 GDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIS 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  + I PD+I++VIG GG VIR + E+T   + IDDDGTVKIA++  
Sbjct: 553 VPRGDISQFAPRIHTIRISPDKIKDVIGKGGSVIRALTEETDTTIEIDDDGTVKIAATGG 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 613 EKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 673 TDYLQMGQEVPVKVLEVDRQGRVRLSIK 700


>gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           155-74]
          Length = 690

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/674 (49%), Positives = 465/674 (68%), Gaps = 14/674 (2%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQMIKEDLRV 254
            A++FGH + + VI+ I++L K   K       EP+         L   ++ + +  L  
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAALAEARLSD 235

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
           +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +L  + R+
Sbjct: 236 AYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRI 295

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F
Sbjct: 296 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 355

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           + HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+G
Sbjct: 356 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 415

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           SSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKVA
Sbjct: 416 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA 475

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           G+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+ 
Sbjct: 476 GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIH 535

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT
Sbjct: 536 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT 595

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+
Sbjct: 596 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 655

Query: 675 LDFDDRGKIKLSMK 688
           L+ D +G+I+LS+K
Sbjct: 656 LEVDRQGRIRLSIK 669


>gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
          Length = 690

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/674 (49%), Positives = 465/674 (68%), Gaps = 14/674 (2%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEMSQMIKEDLRV 254
            A++FGH + + VI+ I++L K   K       EP+         L   ++ + +  L  
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEALNARVAALAEARLSD 235

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
           +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +L  + R+
Sbjct: 236 AYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRI 295

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F
Sbjct: 296 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 355

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           + HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+G
Sbjct: 356 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 415

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           SSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKVA
Sbjct: 416 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA 475

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           G+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+ 
Sbjct: 476 GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIH 535

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT
Sbjct: 536 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT 595

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+
Sbjct: 596 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 655

Query: 675 LDFDDRGKIKLSMK 688
           L+ D +G+I+LS+K
Sbjct: 656 LEVDRQGRIRLSIK 669


>gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
 gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
          Length = 701

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/681 (49%), Positives = 472/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GP+  A+V +     Y+LNP  ++   S LD+ V+GT DAVLMVE EA
Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVVAGTSDAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI A+ +LA   AK      P    ++  + +  E  + 
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEATELLAAIRSEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +L+ ++V+  S E    +  ++ + F +I+ + VR  +
Sbjct: 255 ISQAYTITI----KADRYARLGELRDQVVAKLSGEEGQPSAADVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           metallireducens GS-15]
 gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter
           metallireducens GS-15]
          Length = 697

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/690 (49%), Positives = 473/690 (68%), Gaps = 11/690 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V +++ GR + + TG++A+Q+ GAV+ + GET+VL T V  +S K+GQDFFPLTVNYQ
Sbjct: 4   QKVNVDFGGRTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RPTENE L  R IDR IRPLF + + N+TQ++  V+  D ++
Sbjct: 64  EKAYAGGKIPGGFFKREGRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +++M+ ASAAL +S +PF GP+ G +V  ++G+++ NP  ++   S L++ V+ ++D
Sbjct: 124 DPGILAMIGASAALEVSDIPFFGPIAGVKVGRVDGKFICNPTAEQLAASDLEVVVAASRD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA---ISKLAKMCAKE--PIVIDSKDFS 238
           AV+MVE  A ++SE  +L+AI FGH   +P+I+A   + K A +  +E  P  +D    +
Sbjct: 184 AVIMVEGGAAEISEADLLEAIFFGHASVQPIIDAQIELRKQAGVPKREIAPPAVDEALGA 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           K++E     +K+ +R+      K  R  +I  +  + V+   ++ S     EI    +  
Sbjct: 244 KVKELAYAQMKDAVRIRS----KQERHNRISAIADETVAALEADFSGRG-AEIKDFLDGF 298

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L    R+DGRD++T+R I+++VG+L R HGS+LF RG+TQA+V  TLGT  
Sbjct: 299 EYELVREHILKDGERIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSS 358

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RA+  VLP+   
Sbjct: 359 DEQRIDSLYGESRKRFMLHYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDD 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVS+I ES+GSSSMA+VCG +L++MDAGVPIS PVAGIAMGL+K+GDD  ILSD
Sbjct: 419 FPYTIRIVSDILESNGSSSMASVCGGALSMMDAGVPISAPVAGIAMGLIKEGDDIAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI G++  IM  AL+QAK GRLHIL +M++ 
Sbjct: 479 ILGDEDHLGDMDFKVAGTSTGVTAIQMDIKITGVTREIMGKALEQAKEGRLHILGKMAEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  R  L  + PR+  + +  D+IR+VIG GGK +RGI E TG  ++I+D G + IAS+
Sbjct: 539 LAAPRTDLSPYAPRITTIWVKTDKIRDVIGAGGKNVRGITEATGVSIDIEDTGKINIAST 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    + A +MIR +T   E  K+Y G V KVMDFGAFV      DGLVHIS+L TERV 
Sbjct: 599 NKEACDKAIKMIRDLTAEAEEGKLYMGTVRKVMDFGAFVEIFPGTDGLVHISELDTERVK 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             +D++KEGD V VK +  D +GKIKLS K
Sbjct: 659 DVTDILKEGDKVLVKCIGIDKQGKIKLSRK 688


>gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 698

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/679 (50%), Positives = 475/679 (69%), Gaps = 12/679 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG IARQ+D AVLA+ G+T VL TVV  ++++ GQDFFPLTVNYQE+TYA GKIPG
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTVNYQEKTYAAGKIPG 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+ +RE RP+E E L +R+IDR IRPLF K + NE QVI  V+  +   SP VV+M+  S
Sbjct: 75  GFFKREGRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVEPAVSPDVVAMIGTS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL LSG+PF GP+  A+V + +G+Y+LNP ++E + S LDL V+GT+ AVLMVE EA  
Sbjct: 135 AALALSGIPFNGPIGCARVGFRDGEYLLNPSVEELKTSKLDLVVAGTESAVLMVESEAEV 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMSQMI 248
           LSE+++L A++FGH   + VI+AI++L K  A +P    + D+S       L  +++++ 
Sbjct: 195 LSEEIMLGAVMFGHQAQQTVIQAINEL-KAEAGKP----AWDWSAPVKNEALAAKVAELA 249

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           +  L  +  I EK  R + ++ +K +  +   +E+   +E E+ ++   ++  VVR+ ++
Sbjct: 250 QAGLGDAYRITEKVARLEAVNAVKAQAKAAILAENPEQDEQELSNLLGSLEKSVVRSRII 309

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
             + R+DGRD++ +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G
Sbjct: 310 AGEPRIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERDGQIIDELIG 369

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            + + FM+HYNF P   GE   +G+P RREIGHG+LA+R +  V+P   +FPYT+R+VSE
Sbjct: 370 ERTDRFMLHYNFPPFCVGETGFIGSPKRREIGHGKLAKRGVQAVMPTAEEFPYTVRVVSE 429

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           ITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDHLG 
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDNFVVLSDILGDEDHLGD 489

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA   R+HIL  M + L   R +L  
Sbjct: 490 MDFKVAGTRDGVTALQMDIKIEGITQEIMQIALKQAFEARVHILGVMDEALPAPRAELSM 549

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             PR+  + I PD+IR VIG GG  IR + E+TG  + I+DDGTVK+AS+  A    A  
Sbjct: 550 HAPRITTIKIHPDKIREVIGKGGATIRALTEETGTTIEIEDDGTVKVASTDGAAAAEAIR 609

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            I  IT   E  +IYKG+VV+++DFGAFV+    +DGLVHISQ+  ERV   SD +  G 
Sbjct: 610 RIEEITSDVEEGRIYKGKVVRIVDFGAFVNILPGKDGLVHISQICEERVNNVSDHLTMGQ 669

Query: 669 TVWVKLLDFDDRGKIKLSM 687
            V VK+++ D +G+I+LSM
Sbjct: 670 EVDVKVIEVDRQGRIRLSM 688


>gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 701

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/679 (50%), Positives = 471/679 (69%), Gaps = 12/679 (1%)

Query: 18  LETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGG 76
           LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIPGG
Sbjct: 17  LETGRIARQASGAVLVTVDDDVSVLVTVVGAKHADAGKGFFPLSVHYQEKTYAAGKIPGG 76

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           + +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  SA
Sbjct: 77  FFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGTSA 136

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA +
Sbjct: 137 ALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEAKE 196

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249
           L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    I 
Sbjct: 197 LTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDAIS 256

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +++
Sbjct: 257 QAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENIVN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L G 
Sbjct: 313 GKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGE 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VSEI
Sbjct: 373 KKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEI 432

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           TES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG M
Sbjct: 433 TESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDM 492

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L   
Sbjct: 493 DFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSAN 552

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR+ 
Sbjct: 553 APTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAARQR 612

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG+ 
Sbjct: 613 VLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGEE 672

Query: 670 VWVKLLDFDDRGKIKLSMK 688
           V V +LD D+RG+IKLS+K
Sbjct: 673 VEVLVLDVDNRGRIKLSIK 691


>gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894]
          Length = 690

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/681 (49%), Positives = 468/681 (68%), Gaps = 13/681 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT+NYQERTYA G+IPGG+ RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSC 256
            A++FGH + + VI+ I+ L K   K     +P   +      L   +  + +  L  + 
Sbjct: 182 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEA----LNARVKALAESRLSDAY 237

Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
            I +K  R  QID +K  +++   +E +   + +E E+  +   I+  VVR+ +L  + R
Sbjct: 238 RITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPR 297

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           +DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + 
Sbjct: 298 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDR 357

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+
Sbjct: 358 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESN 417

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSDI GDEDHLG MDFKV
Sbjct: 418 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKV 477

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AG+  GITA+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + +F PR+
Sbjct: 478 AGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRI 537

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
             + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  I
Sbjct: 538 HTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEI 597

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK
Sbjct: 598 TAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 657

Query: 674 LLDFDDRGKIKLSMKVVDQNT 694
           +L+ D +G+++LS+K   + T
Sbjct: 658 VLEVDRQGRVRLSIKEATEQT 678


>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha
           JMP134]
 gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
           JMP134]
          Length = 728

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/704 (48%), Positives = 480/704 (68%), Gaps = 10/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    + +W    +++ETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKQFQWGQHTVRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SG+PF GPV  A++ Y +GQY+LNP R       LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGIPFNGPVGAARIGYKDGQYLLNPTRSQMATSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI  L +   K      P   + 
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              +K+ E    +++E  ++     +K  R +++ ++   + +  +      ++ E+ ++
Sbjct: 243 ALIAKVTEVALPLLQEAYQLR----QKSARSQKLKEVSANVTAALAEAGVDADKVEVGNI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             D++AK+VR  +L  + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TL
Sbjct: 299 MFDLEAKIVRGQILGGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP
Sbjct: 359 GTKSDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +  +F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F 
Sbjct: 419 KDDEFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL  
Sbjct: 479 VLTDILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGA 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ 
Sbjct: 539 MQGAMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTIT 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS+S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  
Sbjct: 599 IASTSTDGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIVN 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ERV    D +KEG  + VKL+  D++G+++LS+K      G  I
Sbjct: 659 ERVKDIKDWLKEGQQLRVKLIQADEKGRLRLSLKAALAEEGGSI 702


>gi|88860552|ref|ZP_01135190.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
 gi|88817750|gb|EAR27567.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
          Length = 709

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/678 (49%), Positives = 468/678 (69%), Gaps = 5/678 (0%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG IARQ+D AVLA+ G+T VL TVV  +    GQDFFPLTVNYQER YA G+IPG
Sbjct: 15  VTLETGAIARQADAAVLASIGDTSVLITVVGKKEAAPGQDFFPLTVNYQERMYAAGRIPG 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RE RP++ E LI+R+IDR IRPLF   + NE QVI  V+  + E  P +V+++  S
Sbjct: 75  GFLKREGRPSDAETLIARLIDRPIRPLFPDGFVNEVQVIATVVSFNPEIQPDIVTLIGTS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AAL +SG+PF GPV  ++V YINGQYVLNP + E ++  LDL V+GT++AVLMVE EAN 
Sbjct: 135 AALAISGIPFNGPVGASRVGYINGQYVLNPSVKELEESQLDLVVAGTENAVLMVESEANI 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLR 253
           LSEDV+L A+++GH + + +I A+++      K      + + +  L  +++ + +  + 
Sbjct: 195 LSEDVMLGAVMYGHEQMQSIITAVAEFKAEAGKPTWNWSAPEKNVDLATQIANIAEAKIG 254

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
            +  I +K  R   +   K ++V   ++   E  S ++ E+  +F  ++  +VR  ++  
Sbjct: 255 AAYLITDKVARKDALSAAKAEVVETLTAQLAEGESLDKNEVGDLFGSLEKTIVRGRIIAG 314

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D Q +D+LSGT 
Sbjct: 315 EKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQMLDALSGTS 374

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
            + FM+HYNF P   GE   +G+P RREIGHG LA+R I  V+P   +FPY++R+VSEIT
Sbjct: 375 NSRFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPSLTEFPYSIRVVSEIT 434

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMA+VCG+SLALM+AGVP+   VAGIAMGLVK+ ++F++LSDI GDEDHLG MD
Sbjct: 435 ESNGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKENENFVVLSDILGDEDHLGDMD 494

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT +GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  + +L EF 
Sbjct: 495 FKVAGTSNGITALQMDIKIEGITREIMQIALNQAKAARLHILGVMDQAISAPQAELSEFA 554

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  M IPP +I  VIG GG  IR + E+TG  + I+DDGT+KIA+++    +AA   I
Sbjct: 555 PRIYTMNIPPKKIAEVIGKGGATIRALTEETGTTIEIEDDGTIKIAATNGDSAKAAIARI 614

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
             +T   EV  IY G+VV+++DFGAFV+    +DGLVHISQ+  ERV   +D +  G  V
Sbjct: 615 EQLTAELEVGTIYTGKVVRLVDFGAFVNVLPGKDGLVHISQICEERVNNVADHLSIGQEV 674

Query: 671 WVKLLDFDDRGKIKLSMK 688
            VK+++ D +G+++LS+K
Sbjct: 675 KVKVVEVDRQGRVRLSIK 692


>gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 701

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N]
 gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N]
          Length = 718

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/697 (47%), Positives = 486/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V Y+ GQY+LNP   + + S +DL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVAYVEGQYLLNPTASQLKSSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT++AVLMVE EA QLSE+++L  ++FGH + +  I AI  L +   K E     +    
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPEWTWSPAAKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
            L   ++   +E L  +  I EK  R  ++ ++  ++ +  + + ++  +       + +
Sbjct: 241 ALIAAVTAAAQEGLSAAYQIREKQARTTKLREVYAEVSAKLAEQAAAAGQDAPDGVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+R++ PVL
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+   F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVPI+  VAG+AMGL+ +   F
Sbjct: 421 PKPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMRESLDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS    + + A+  I  +T   EV ++Y G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDEGQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ D++G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADEKGRLRLSVKAI 697


>gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 701

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYIGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
           2581]
 gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
           2581]
          Length = 710

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/684 (49%), Positives = 468/684 (68%), Gaps = 4/684 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E+    + LETGRIARQ+ GAV+ T  +TVVL TVV  + +   Q FFPL+V+YQE+TY
Sbjct: 8   FEYGRSTVTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSVHYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  V+  D    P +
Sbjct: 68  AVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            +M+  SAAL +SG+PF GP+  A+V +     Y LNP ++E   S L++ V+GT+ AVL
Sbjct: 128 AAMIGTSAALAISGVPFNGPIGAARVGFTEEHGYFLNPSVEELASSELNMVVAGTEKAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMS 245
           MVE EAN+L ED +L A+++GH E +  I AI +LA    K      +  + + L++ M+
Sbjct: 188 MVESEANELLEDEMLGAVLYGHQEMQVAINAIQELAAEAGKPRWDWQAPAENTALKDAMA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQAKVVR 304
              +  +  +  I +K  R   +  LK + V   + E    ++  E+   F  ++ +VVR
Sbjct: 248 SGFEAKVGEAYRITDKMQRQDALAALKDEAVEQLAGEEDGKFDADEVKGAFASLEKRVVR 307

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           + ++  + R+DGRD +TVR +  +VG L +THGS++F RG+TQA+VV TLGT  D Q ++
Sbjct: 308 SRVVKGEPRIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTLRDAQLIE 367

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           SL G +++ F++HYNF P   GE   MG P RREIGHGRLARR +  +LP   +FPYT+R
Sbjct: 368 SLEGERKDRFLLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGVEAMLPSEDEFPYTIR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVKD D F +L+DI GDED
Sbjct: 428 VVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDEDGFAVLTDILGDED 487

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAG+  G+TA+QMD+KI GI+E IM  ALQQA   RLHIL +M+ V+ +SR 
Sbjct: 488 HLGDMDFKVAGSAEGVTALQMDIKIEGINEEIMEQALQQAHEARLHILEQMNTVIGQSRE 547

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ E  P +  + I P++IR+VIG GG +IR I E TGA +++DDDGTV+I +   +  +
Sbjct: 548 EVSENAPSMATIKIDPEKIRDVIGKGGAMIRKICEDTGASIDLDDDGTVRIYAEEKSAAK 607

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA + + +IT VPE+ K+Y+G+VV++ DFGAFV+     DGLVHISQ+  ERV    D +
Sbjct: 608 AAIDTVLAITAVPEIGKLYRGKVVRIADFGAFVNIIPGTDGLVHISQIVPERVNDVRDYL 667

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
            EGD   VK+LD D+R ++KL++K
Sbjct: 668 NEGDEPIVKVLDIDNRNRVKLTIK 691


>gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf-5]
 gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           Pf-5]
          Length = 703

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/679 (49%), Positives = 474/679 (69%), Gaps = 6/679 (0%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GP+  A+V +     Y+LNP  ++    SLD+ V+GT++AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTEEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKDFSKLEEEMSQMIK 249
            +L+ED +L A++F H+E + VI+A+ +LA   AK     D   + + ++L   +     
Sbjct: 195 KELTEDQMLGAVLFAHDEFQSVIKAVKELAAEAAKPTWDWDWAAAPEATELLGAIRAEFG 254

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           E +  +  I  K  R  ++ +LK ++V+  S E    +  ++ + F +I+ + VR  +++
Sbjct: 255 EAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGEIEYRTVRENIVN 314

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L G 
Sbjct: 315 GKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGE 374

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VSEI
Sbjct: 375 KKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVSEI 434

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           TES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHLG M
Sbjct: 435 TESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDM 494

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L   
Sbjct: 495 DFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSAN 554

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAAR+ 
Sbjct: 555 APTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAARQR 614

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG  
Sbjct: 615 VLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQE 674

Query: 670 VWVKLLDFDDRGKIKLSMK 688
           V V +LD D+RG+IKLS+K
Sbjct: 675 VEVLVLDVDNRGRIKLSIK 693


>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
 gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
          Length = 720

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 485/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +   ++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           frigidimarina NCIMB 400]
 gi|122300513|sp|Q086G7|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 698

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/689 (50%), Positives = 478/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +     +DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P +V
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDIV 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YIN +YVLNP +D+    SL+L V+GT+ AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAGTKAAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242
           E EA  L+E+++L A+ +GH++ + V++AI++  K  A +P       V D    +K++E
Sbjct: 189 ESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEF-KAEAGKPTWDWTAPVQDQALVAKIKE 247

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
                + E  ++      K  R  Q+  +K    +   +E+   +  E+ ++   ++  V
Sbjct: 248 LAEAGMTEAYQIEV----KQDRYVQVGIVKAAAKAALVAENPDVDTREVDNLLGSLEKSV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++  K R+DGR+ + +R +S   G+L RTHGSSLF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R ++ V+P   +FPY+
Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEFPYS 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GD
Sbjct: 424 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 484 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  +    PR+  + I P++IR+VIG GG VIR + E+TG  + +DD+GTVKIASS+   
Sbjct: 544 RGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSNG-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 602 -EATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 661 VSDHLEMNQEVAVKVMEVDRQGRVRLSIK 689


>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
           BGR1]
 gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
           BGR1]
          Length = 709

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/707 (48%), Positives = 482/707 (68%), Gaps = 19/707 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKNAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+ QYVLNP  D+ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNQYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K        D+  
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKP-----EWDWQP 237

Query: 240 LEEEMSQMIKEDLRVSCFIPEKY-VRCKQIDDLKKKMVSYFSSEHSSWNEGE-------- 290
             ++ + +          +   Y +R KQ    K K V   +S                 
Sbjct: 238 APKDEALIANVTAAAQADLLAAYQIRDKQARSAKLKEVYASTSAKLEAEAAAAGTTAADK 297

Query: 291 --IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             + ++  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA
Sbjct: 298 ATVGNILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 357

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +VV TLGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA
Sbjct: 358 LVVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 417

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   LP   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ 
Sbjct: 418 LVACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIL 477

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + + F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QAK GR
Sbjct: 478 EDNKFAVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAKEGR 537

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HIL +M + +S +   L EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I 
Sbjct: 538 MHILGKMKESVSGANTTLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDIS 597

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDG V IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+H
Sbjct: 598 DDGVVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLH 657

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQN 693
           IS++  ERV   +D +KEG  V +K++  D++G+++LS K +  +QN
Sbjct: 658 ISEIVNERVKDINDYLKEGQVVKIKVIQVDEKGRVRLSAKALLNEQN 704


>gi|254282476|ref|ZP_04957444.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR51-B]
 gi|219678679|gb|EED35028.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR51-B]
          Length = 717

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/694 (49%), Positives = 475/694 (68%), Gaps = 12/694 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +V +   ++ G  + LETGRIARQ+ GAV+ T G+T VL TVV  RS++ GQDFFPL V
Sbjct: 1   MNVVSKSFQYGGHEVTLETGRIARQASGAVMVTMGDTSVLCTVVAARSMRPGQDFFPLAV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+TY+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  VM   
Sbjct: 61  HYIEKTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSAG 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVS 179
            E  P + +M+  SAAL +SG PF GP+ GA+V +   + Y+LNP     + S LD+ V+
Sbjct: 121 PEIDPDIPAMIGTSAALAISGAPFNGPIGGARVGFTEAEGYLLNPTYSALKSSKLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+DAVLMVE +A+QL+ED +L A++F H E + VI AI++L     K     +   +D 
Sbjct: 181 GTKDAVLMVESQADQLTEDQMLGAVLFAHQEMQAVIHAINELVADAGKPRWEWQAPAVDE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              S +E E    + E  R++    EK  R +++ +++  +V   ++E     + +I  V
Sbjct: 241 GLQSAVEAEAGAALGEAYRIT----EKAARYERVGEVRNAVVEKLAAEDGPTAD-DIKDV 295

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F+ ++ ++VR  +LD + R+DGRD  TVR I+ ++ +L + HGS+LF RG+TQAI  +TL
Sbjct: 296 FKGLEKRIVRQRILDGEPRIDGRDGRTVRPIACELDILSKVHGSALFTRGETQAIGAITL 355

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+  D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +  VLP
Sbjct: 356 GSTRDAQIIDALEGERRDPFMLHYNFPPYSVGEAGRIGFTSRREIGHGRLARRGLAAVLP 415

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSEITES+GSSSMA+VC  SL LM AGVP+  PVAGIAMGLVK+G++F 
Sbjct: 416 TEEEFPYTIRVVSEITESNGSSSMASVCVGSLGLMAAGVPLKAPVAGIAMGLVKEGNNFA 475

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAGT SG+TA+QMD+KI GI+E IM +AL+QA + RLHIL +
Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTASGVTALQMDIKIEGINEQIMEIALEQALQARLHILGQ 535

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+ V+   R    E  P +  + +  D+IR++IG GG  IR I E++GA V+I+DDGTVK
Sbjct: 536 MNAVIDAPREITSENAPSMVALKVDSDKIRDIIGKGGATIRQITEESGATVDINDDGTVK 595

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   + A  +AA +MI  IT   EV  +Y G V +++DFGAF+     +DGLVHISQ++ 
Sbjct: 596 VFGQTQAARDAAVDMIMEITAEAEVGAVYTGTVARIVDFGAFITILPGKDGLVHISQIAE 655

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ERV   SD + EG+ V VK+LD D RG+IKLS+K
Sbjct: 656 ERVENVSDYLTEGEEVRVKVLDVDQRGRIKLSIK 689


>gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 687

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/678 (49%), Positives = 466/678 (68%), Gaps = 10/678 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA GKIPGG+ RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSC 256
            A++FGH + + VI+ I+ L K   K     +P  ++      L   ++ + +  L  + 
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEA----LNARVAALAESRLSDAY 237

Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316
            I +K  R  Q+D +K + ++   +E  + +  E+  +   I+  VVR+ +L  + R+DG
Sbjct: 238 RITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDG 297

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G   + F+ 
Sbjct: 298 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTDSFLF 357

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSS
Sbjct: 358 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSS 417

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
           SMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+
Sbjct: 418 SMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGS 477

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
             GI+A+QMD+KI GI++ IM +AL  AK  RLHIL  M + ++  R  + EF PR+  +
Sbjct: 478 RDGISALQMDIKIEGITKEIMQVALNLAKGARLHILGVMEQAINAPRGDISEFAPRIHTI 537

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT  
Sbjct: 538 KINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAE 597

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+
Sbjct: 598 IEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 657

Query: 677 FDDRGKIKLSMKVVDQNT 694
            D +G+++LS+K   + T
Sbjct: 658 VDRQGRVRLSIKEATEQT 675


>gi|239994336|ref|ZP_04714860.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
           ATCC 27126]
          Length = 724

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/685 (48%), Positives = 465/685 (67%), Gaps = 2/685 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+  AVLA+  +T VL TVV  +  K  QDFFPLTVNYQE
Sbjct: 26  TKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKADQDFFPLTVNYQE 85

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + +KNE QV++ VM  + +  
Sbjct: 86  KAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIP 145

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
             ++SM+  SAAL +SG+PF GP+  A+V + NG+Y+LN R +E  +  LDL V+GT+ A
Sbjct: 146 TDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVVAGTEGA 205

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243
           VLMVE EA+ LSED +L A++FGH + + V+ A+++ A     E        + + L+++
Sbjct: 206 VLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDWAPEAENTALKDK 265

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +  + + ++  +  I +K  R   +    +K +    +E    ++ E++ +  D+++ VV
Sbjct: 266 VKALAEAEMTAAYQISDKLERKDAVTAATEKALEAILAEDEEQDKKEVLDLLHDLESDVV 325

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L    R+DGRD   +R +    G+L RTHGS+LF RG+TQA+V  TLGT  D Q +
Sbjct: 326 RSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTERDAQMI 385

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY +
Sbjct: 386 DELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVV 445

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  D+F++LSDI GDE
Sbjct: 446 RVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDE 505

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHILN M + +   R
Sbjct: 506 DHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGHR 565

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L EF PR+  M I  D+IR+VIG GG +IR I E++   + I+DDGT+KI ++  A+ 
Sbjct: 566 EELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATERAKA 625

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A   I  +T   EV K Y G++ +++DFGAFV     ++GLVHISQ++ ERV K +D 
Sbjct: 626 DIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVTDY 685

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++EG  V VK+++ D + +++LS+K
Sbjct: 686 LEEGQMVDVKVMEIDRQNRVRLSIK 710


>gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis PB1/+]
 gi|81640532|sp|Q66F56|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704836|sp|B2K2Q9|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+]
          Length = 704

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQDVPVKVMEVDRQGRIRLSIK 690


>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 720

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 485/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +   ++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVDADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
 gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
          Length = 720

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/699 (48%), Positives = 487/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY +NP   + + S LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA+QLSE+++L  +++GH + + VI AI +L K   K     D +  +K
Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHQQMQAVINAIHELVKDAGKPDW--DWQAPAK 238

Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E  ++ +    +E L  +  I EK  R  ++ ++   + +  ++  +   E    +V  
Sbjct: 239 DEALIAAVTAAAQEGLNAAYQIREKQARTTKLREVSADVSAKLAAAAAEKGEALPDAVTV 298

Query: 297 D-----IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           D     +++ +VR  +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV
Sbjct: 299 DNIMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVV 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT++DEQ +D+L G  R+ FMMHYN  P ATGE  R+G P RREIGHGRLA+R++ P
Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIP 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP    F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ DG 
Sbjct: 419 LLPAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGG 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRLHI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDG
Sbjct: 539 LGKMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+ IAS   A+ + A+  I  +T   EV +IY+G V++++DFGA V     RDGL+HIS+
Sbjct: 599 TIVIASVDEAQAKEAQRRIVELTADVEVGQIYEGAVLRLLDFGAIVQVLPGRDGLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++  R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 659 IANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697


>gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 701

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/681 (50%), Positives = 471/681 (69%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEFGDA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 255 ISQAYTITV----KADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR
Sbjct: 551 ANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V ++D D+RG+IKLS+K
Sbjct: 671 QEVEVLVMDVDNRGRIKLSIK 691


>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
          Length = 769

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/698 (48%), Positives = 482/698 (69%), Gaps = 14/698 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQS GAV+ +  +TVVLATVV     K GQDFFPLT
Sbjct: 3   MFNKVTKSFQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKSDAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP---RLDEDQGSLDLF 177
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP   +L + Q  +DL 
Sbjct: 123 NPEVQADIPAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQ--MDLV 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI 232
           V+GT+ AVLMVE EA  LSE+V+L A++FGH++ K  I AI++L +   K     +P   
Sbjct: 181 VAGTEAAVLMVESEATGLSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAK 240

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           D    +K+    + + +E LR +  I  K  R +    +   + +    E  +++   + 
Sbjct: 241 DEAFIAKV----TALAEEPLRAAYQIRSKQARTQATRAVGASVQAALKEEGVAFDPVAVD 296

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           ++  +I+A++VR  +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V  
Sbjct: 297 NLLFEIEARIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAA 356

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D+L+G   + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  V
Sbjct: 357 TLGTERDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAV 416

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPYT+R+VSEITES+GSSSMA+VCG  L+L+DAGVP+   VAGIAMGL+K+G+ 
Sbjct: 417 LPNKDEFPYTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNR 476

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI GDEDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QAK  RLHIL
Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHIL 536

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M + +  ++ ++ +F PR+  M I P++IR+VIG GG  IR + ++TG  ++I +DGT
Sbjct: 537 GKMVEAVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGT 596

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + IAS+   +   A++ I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ+
Sbjct: 597 ITIASTDADKAAFAQKRIEEITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQI 656

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + +RV K +D ++EG  + VK+L+ D++G+IKLSMK +
Sbjct: 657 AHQRVEKVTDFLEEGQVIKVKVLETDEKGRIKLSMKAL 694


>gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
 gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
          Length = 720

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/699 (48%), Positives = 486/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY LNP   + + S LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYALNPTASQLKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSE+++L  +++GH + + VI AI +L K   K     D +  +K
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPEW--DWQAPAK 238

Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E  ++ +    +E L  +  I EK  R  ++ ++   + +  ++  +   E    +V  
Sbjct: 239 DEALIAAVTAAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKGESAPDAVTV 298

Query: 297 D-----IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           D     +++ +VR  +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV
Sbjct: 299 DNIMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVV 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT++DEQ +D+L G  R+ FMMHYN  P ATGE  R+G P RREIGHGRLA+R++ P
Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIP 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP    F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ DG 
Sbjct: 419 LLPAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGG 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRLHI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDG
Sbjct: 539 LTKMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+ IAS   A+ + A+  I  +T   EV ++Y+G V++++DFGA V     RDGL+HIS+
Sbjct: 599 TIVIASVDEAQAKEAQRRIVELTADVEVGQMYEGSVLRLLDFGAIVQVLPGRDGLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++  R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 659 IANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697


>gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 702

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/698 (49%), Positives = 475/698 (68%), Gaps = 7/698 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  + E ++  + + +ETGRIARQ++ +VL   G   VL  VV     K+GQ+FFPLT
Sbjct: 3   MFNTISREFQYGNQQVIIETGRIARQAN-SVLVHMGGVSVLVAVVVKSEAKEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE RPTE E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +    + +M+ ASAAL +S  PF GPV GA+V +ING+YVLNP ++E + S LDL V+
Sbjct: 122 DKKHYADIAAMIGASAALAISDAPFNGPVGGARVGFINGEYVLNPSIEELKNSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I +LAK    E     + +  +
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIVELAKAVGTEKQQFVAPELNA 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSV 294
           +L+E+++      +  +  I +K  R +++D++K   +   + +      S  E +I  +
Sbjct: 242 ELKEKVTTQFGSQVADAYSISDKQARYEKLDEIKAAAIEALAGDPESEEFSEKESQIKEI 301

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++ + VR  +L  K R+DGRD +TVR +  QVG+L  THGS+LF RG+TQA+V  TL
Sbjct: 302 YNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTL 361

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D   +DSL+GT ++ FM+HYNF   + GE  R G P RREIGHGRLARR +  +LP
Sbjct: 362 GNSRDVNLIDSLAGTIQDHFMLHYNFPHFSVGETGREGVPKRREIGHGRLARRGVQAMLP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F 
Sbjct: 422 DSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDRFA 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI+ +IM  AL++A  GR+HILN 
Sbjct: 482 VLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITADIMEKALEKAHAGRIHILNA 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++VL  SR ++    P   ++ I  D+IR+VIG GG  IR + E TGA ++IDD+GT++
Sbjct: 542 MNEVLPSSRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVIDIDDNGTIR 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   + A  + A   I ++T   EV K+YKG V +V+DFGAFV      DGLVHISQ+S 
Sbjct: 602 IFGENKAATKEAIRQIEALTAEVEVGKVYKGTVARVVDFGAFVTVLPGTDGLVHISQISD 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           ERV   SD + EG  + V + D D+RG+IKL+MK V+Q
Sbjct: 662 ERVENVSDYLSEGQEINVLVQDVDNRGRIKLTMKGVEQ 699


>gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           denitrificans OS217]
 gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans
           OS217]
          Length = 701

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/689 (49%), Positives = 480/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +     +DFFPLTVNYQE+TYA
Sbjct: 12  EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P ++
Sbjct: 72  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+Y+LNP +D+    SL+L V+GT+ AVLMV
Sbjct: 132 SMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGTKAAVLMV 191

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242
           E EA  L+E+++L A+ +GH++ + V++AI++  K  A +P       V D    +K++E
Sbjct: 192 ESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEF-KAEAGKPTWDWTAPVQDQALVAKIKE 250

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
                + +  ++      K  R  Q+  +K    +   +E+   +  E+ ++   ++  V
Sbjct: 251 LAEAGMTDAYQIEV----KQDRYVQVGVVKAAAKAALVAENPDVDTREVDNLLGSLEKNV 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ ++  K R+DGR+ + +R ++   G+L RTHGSSLF RG+TQA+V  TLGT  D Q 
Sbjct: 307 VRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R ++ V+P   +FPY+
Sbjct: 367 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYS 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GD
Sbjct: 427 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 487 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  +    PR+  + I P++IR+VIG GG VIR + E+TG  + +DDDGTVKIASS+   
Sbjct: 547 RGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASSNG-- 604

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV ++Y G+V++++DFGAF++    +DGLVHISQ+S ERVA 
Sbjct: 605 -EATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVAN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 664 VSDHLEMNQDVKVKVMEVDRQGRVRLSIK 692


>gi|187611313|sp|Q12QG9|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 698

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/689 (49%), Positives = 480/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +     +DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+Y+LNP +D+    SL+L V+GT+ AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGTKAAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI------VIDSKDFSKLEE 242
           E EA  L+E+++L A+ +GH++ + V++AI++  K  A +P       V D    +K++E
Sbjct: 189 ESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEF-KAEAGKPTWDWTAPVQDQALVAKIKE 247

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
                + +  ++      K  R  Q+  +K    +   +E+   +  E+ ++   ++  V
Sbjct: 248 LAEAGMTDAYQIEV----KQDRYVQVGVVKAAAKAALVAENPDVDTREVDNLLGSLEKNV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ ++  K R+DGR+ + +R ++   G+L RTHGSSLF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQK 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R ++ V+P   +FPY+
Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFPYS 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GD
Sbjct: 424 IRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 484 EDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  +    PR+  + I P++IR+VIG GG VIR + E+TG  + +DDDGTVKIASS+   
Sbjct: 544 RGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASSNG-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV ++Y G+V++++DFGAF++    +DGLVHISQ+S ERVA 
Sbjct: 602 -EATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 661 VSDHLEMNQDVKVKVMEVDRQGRVRLSIK 689


>gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides F]
 gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           CA88-4125]
 gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola]
 gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis YPIII]
 gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis CO92]
 gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides A]
 gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
 gi|123149978|sp|Q0WBF9|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611335|sp|A4TQU4|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611342|sp|A7FMR8|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611439|sp|Q1C3L8|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704837|sp|A9R5A9|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704838|sp|B1JLX6|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92]
 gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           Pestoides F]
 gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           CA88-4125]
 gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola]
 gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides A]
 gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
 gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
 gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 705

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQDVPVKVMEVDRQGRIRLSIK 690


>gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
 gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
          Length = 686

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/668 (50%), Positives = 459/668 (68%), Gaps = 2/668 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE  + SLDL V+GT  AVLMVE EA+ LSED +L
Sbjct: 122 IPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVLMVESEADVLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH + + VIE I+ L     K      +   ++ L   ++++ +  L  +  I E
Sbjct: 182 GAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVAELAESRLGDAYHITE 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K  +V    ++  S +  EI  +   ++  VVR+ +L  + R+DGR+ +
Sbjct: 242 KQERYAQVDAIKSSVVEALLAQDESLDASEIQDILGSVEKNVVRSRVLRGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F+ HYNF
Sbjct: 302 MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  ++P+   FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  + +F PR+  + I P
Sbjct: 482 TALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISQFAPRIHTIRINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 661

Query: 681 GKIKLSMK 688
           G+++LS+K
Sbjct: 662 GRVRLSIK 669


>gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis KIM 10]
 gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM 10]
 gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 737

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 40  KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 99

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 100 YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 159

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 160 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 219

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 220 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 279

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 280 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 339

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 340 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 399

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 400 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 459

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 460 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 519

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 520 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 579

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 580 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 639

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 640 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 699

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 700 MGQDVPVKVMEVDRQGRIRLSIK 722


>gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 722

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/702 (49%), Positives = 480/702 (68%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF       +W    + +ETG IARQ+ GAV+    +TVV+ TVV  +S K GQ FFPLT
Sbjct: 3   MFKKAVKSFQWGTYQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+++V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + +    + +++AASAAL +S +PF GPV  A+V Y NGQY+LNP R ++    LDL V+
Sbjct: 123 NPDVPSDIPALIAASAALAVSSIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EANQLSE+V+L A+++GH++ +  I AI+ L  +C       D     K
Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINDL--VCEAGKPEWDWTAAPK 240

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E    +++ + +  LR +  I +K  R  ++ ++ K++++  S E    +   +  +  
Sbjct: 241 DEPFIAKVTALAEAPLREAYQIRQKGARSDKLKEISKEVMAKLS-EEGDVDAVAVSDIMF 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 300 EIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D L G  R+ FM HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP  
Sbjct: 360 ARDEQIIDVLEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSA 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             F Y++R+VSEITES+GSSSMA+VCG  LA+MDAGVP+   VAG+AMGL+ DG+ F +L
Sbjct: 420 EDFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+K+ GI++ IM +AL QAK GRLHIL++M 
Sbjct: 480 TDILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQ 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L    PR+    I PD+IR VIG GG  I+ + ++TG  ++I DDGTV IA
Sbjct: 540 EAMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S   +  A+  I  IT   EV KIY+G VVK+++FGA V+    +DGL+HIS++S ER
Sbjct: 600 STSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V +  D + EG  V VKLL  D+RG+++LS+K    + G  I
Sbjct: 660 VKEVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEGGTI 701


>gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis
           URRWXCal2]
 gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis
           URRWXCal2]
          Length = 747

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/696 (47%), Positives = 484/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V  +  K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYATGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ L+E+ +L+A+ FG    +PVI+ I +LA+   K  + +     + 
Sbjct: 181 GTSDSVMMVESEAHLLAEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMTVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDG+V + +
Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 701

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/701 (50%), Positives = 475/701 (67%), Gaps = 18/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  D+ +K GQDFFPLT
Sbjct: 1   MFDKHIKTFQYGKHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y +G Y+LNP   E ++  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH + + VI AI++LA      P V D K   +
Sbjct: 181 GTAKAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIAAINELADEV--NPEVWDWK-APE 237

Query: 240 LEEEMSQMIKEDLRVSCFIPEKY-VRCKQIDDLKKKMVSYFSSEHSSWNE-------GEI 291
             EE+   ++E       I E + +R KQ    K    ++ + E +  NE        EI
Sbjct: 238 TNEELVAKVRE--IAGATIAEAFKIRSKQARSAKIAE-AWSAVEAALINEDTDTLAANEI 294

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +F+ ++A VVR  +LD + R+DGRD+ TVR I+ Q G+L RTHGS+LF RG+TQA+ V
Sbjct: 295 KGIFKHLEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAV 354

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  
Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIA 414

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP+   F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + +
Sbjct: 415 VLPEPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENN 474

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QAK  RL+I
Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLYI 534

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + +   + +L +  PR+  M I PD+IR VIG GG+ IR I  +TG ++NI+DDG
Sbjct: 535 LAQMKEAVDGPQ-ELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETGTEINIEDDG 593

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649
           TV IA+++    EAAR+ I  IT   EV KIY+G VVK++D   GA V     +DGLVHI
Sbjct: 594 TVTIAATTSEAGEAARKRIEEITAEVEVGKIYEGTVVKILDNNVGAIVTVMPGKDGLVHI 653

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S+++ ERV    D ++ G TV VK L  DDRG+++LSMK +
Sbjct: 654 SEIAHERVKNVGDYLQVGQTVNVKALAVDDRGRVRLSMKAL 694


>gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|187611341|sp|A1JIX3|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica]
 gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           W22703]
          Length = 706

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 248 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LSMK
Sbjct: 668 MGQEVPVKVIEVDRQGRIRLSMK 690


>gi|93004911|ref|YP_579348.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter
           cryohalolentis K5]
 gi|123264798|sp|Q1QEN9|PNP_PSYCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|92392589|gb|ABE73864.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter
           cryohalolentis K5]
          Length = 700

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/700 (49%), Positives = 478/700 (68%), Gaps = 9/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + +ETGRIARQ++  ++   G TV++A VV   + K+GQ+FFPLT
Sbjct: 3   MFNTIKREFQYGNQQVVIETGRIARQANSILVHMGGVTVLVAAVVKSDA-KEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE R +E+E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D   S  + +++ ASAAL +S  PF GPV  A+V +ING+YVLNP L+E  +  LDL V+
Sbjct: 122 DKTQSADIAALIGASAALAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDF 237
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ +A     AK+      ++ 
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHQQQQIVIDNIASMAAEIGTAKQQYTAPVRN- 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293
             LE  M +     +  +  I +K  R  ++D++K   ++  + +  S +  + VS    
Sbjct: 241 QTLETGMKEQFGTQVSDAYTITDKQARYSKLDEIKDAALAALAGDAESESYADTVSELKE 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ D++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+V  T
Sbjct: 301 IYNDLKYRTVRDNILSGKPRIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D   +DSL+GT R+ FM+HYNF   + GE  R G P RREIGHGRLARR +  +L
Sbjct: 361 LGNTRDVNMIDSLAGTIRDHFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAML 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI  PVAGIAMGLVK+G+ F
Sbjct: 421 PDSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAG+  GITA+QMD+KI GI+ +IM  AL+QA  GR+HIL+
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGSKDGITALQMDIKIEGITPDIMEQALKQAHAGRIHILD 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M+KVL ESR ++    P   ++ I PD+IR+VIG GG  IR + E+TGA ++IDD GT+
Sbjct: 541 AMNKVLPESRTEINAHAPNYAVIEINPDKIRDVIGKGGATIRQLTEETGAVIDIDDAGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +I   + A  +AA   I +IT   EV K Y+G V +++DFGAF++     DGLVHISQ++
Sbjct: 601 RIFGENKAATKAAIAKIEAITAEVEVGKTYEGTVARIVDFGAFINVLPNTDGLVHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ERV   SD +KEG  V V + D D+RG+IKL+MK ++Q+
Sbjct: 661 DERVENVSDYLKEGQIVKVLVQDVDNRGRIKLTMKGIEQS 700


>gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Antiqua]
 gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua]
          Length = 731

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 34  KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 93

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 94  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 153

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 154 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 213

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 214 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 273

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 274 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 333

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 334 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 393

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 394 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 453

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 454 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 513

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 514 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 573

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 574 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 633

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 634 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 693

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 694 MGQDVPVKVMEVDRQGRIRLSIK 716


>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
 gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
          Length = 719

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/693 (48%), Positives = 481/693 (69%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      +W    + +ETG IARQ+ GAVL    +TVVLATVV  R+ K GQDFFPLT
Sbjct: 1   MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+ENE LISR+IDR IRPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGRPSENETLISRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++A SAAL +SGLPF GPV  A+V Y+NG YVLNP R +     L+L V+
Sbjct: 121 NPEVEADIPALLATSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237
           GT+ AVLMVE EA+QLSE+V+L+A++FGH + +  I AI +L +   K         KD 
Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKD- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L + +  +  +D+R +  I +K  R + + +   K+ +  +    + +  ++  +  D
Sbjct: 240 QALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGVAADAAKVDGILFD 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +L  + R+DGRD+ TVR +S +  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 300 MEARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTD 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +D Q +D+L G  R+ F++HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP+  
Sbjct: 360 QDAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSE+TES+GSSSMA+VCG  LAL+DAGVP+   VAGIAMGL+K+G+ F +L+
Sbjct: 420 DFAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ SG+TA+QMD+KI GI+  IM +AL QA+  R+HIL  M +
Sbjct: 480 DILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQ 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +  +R ++ +F PR+  + I P++IR+VIG GG  IR + E+TG ++NI +DGT+ IAS
Sbjct: 540 AVGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   +   A++ I  +T   EV ++Y G VVK++DFGA V+    +DGL+HISQ++ ER+
Sbjct: 600 TDADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K SD ++EG  V VK+++ DD+G+ +LS+K +
Sbjct: 660 NKVSDFLQEGQKVRVKVIETDDKGRFRLSIKAL 692


>gi|326570032|gb|EGE20078.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC7]
          Length = 696

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/701 (49%), Positives = 479/701 (68%), Gaps = 14/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++  ++   G +V++A VV   ++  GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+     K+  V   I+ 
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291
           +  ++L+E+ +  + E   ++     K  R  ++D+L  + +     E S   +    +I
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +FE ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV
Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  
Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP   +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+
Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HI
Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           LN M++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+G
Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T++I  +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ
Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +S ERV   SD +KEG TV V++ D D+RG+IKL+MK V+Q
Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVEQ 696


>gi|119477397|ref|ZP_01617588.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2143]
 gi|119449323|gb|EAW30562.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2143]
          Length = 677

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/670 (49%), Positives = 463/670 (69%), Gaps = 14/670 (2%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           + T G+  VL TVV  +S K+G DFFPL V+YQE++YAVGKIPGG+ +RE+RP+E E L 
Sbjct: 1   MVTVGDVQVLCTVVGAKSAKEGMDFFPLGVHYQEKSYAVGKIPGGFFKREARPSEKETLT 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           SR+IDR +RPLF K +KNE QV+  VM  D ++ P + +++  SAAL +SGLPF GPV  
Sbjct: 61  SRLIDRPMRPLFPKGFKNEVQVVCTVMSADHDTDPDIAALIGTSAALSISGLPFGGPVGA 120

Query: 152 AQVDYI--NGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGH 208
           A+V +   NG Y+LNP   +  GS LD+ V+GT DAVLMVE EA +LSED +L A++F H
Sbjct: 121 ARVGFTADNG-YILNPSYSQLAGSALDMVVAGTSDAVLMVESEAQELSEDQMLGAVLFAH 179

Query: 209 NECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
            E + VI+ I +LA    K     +P   ++   + +     Q I +  R++    +K  
Sbjct: 180 QEMQTVIKVIGELASEAGKPSWNWQPEEENTALLAAVANGYKQGIGDAYRIT----DKAD 235

Query: 264 RCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETV 322
           R  ++ +LK + +   + +E + +  G++  VF  ++   VR  +L+ + R+DGRD+ TV
Sbjct: 236 RYSKVGELKTQAIEQLAKAEGAEYGAGDVSGVFSKLEKSTVRQRILNGEPRIDGRDNNTV 295

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R I A+VG+L + HGS+LF RG+TQAI V TLGT  D Q +D+L G + ++FM+HYNF P
Sbjct: 296 RPIQAEVGVLAKAHGSALFTRGETQAIGVTTLGTTRDAQLIDALEGKREDNFMLHYNFPP 355

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            + GE  R+G  SRRE+GHGRLARR +  VLP    FPYT+R+V+EITES+GSSSMA+ C
Sbjct: 356 YSVGECGRIGFTSRREVGHGRLARRGVAAVLPNPEDFPYTIRVVAEITESNGSSSMASAC 415

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
            +S+++M+AGVP+  PVAGIAMGL+K+G+ F +L+DI GDEDHLG MDFKVAGT +G+TA
Sbjct: 416 VASMSMMEAGVPLKAPVAGIAMGLIKEGERFAVLTDILGDEDHLGDMDFKVAGTANGVTA 475

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +QMD+KI GI+E IM +AL+QA   RLHIL +M+ V+SESR  + +  P +    I  D+
Sbjct: 476 LQMDIKIEGINEQIMSIALEQALTARLHILGQMNAVISESRSAVSDNAPSMATFKIDSDK 535

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           IR+VIG GG  IR I E+TGA V+IDDDGT++I  S  A  +AA   +  IT   EV  I
Sbjct: 536 IRDVIGKGGATIRSITEETGATVDIDDDGTIRIYGSDAASRDAAVAKVEEITAEAEVGAI 595

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           Y+G V +++DFGAFV+    +DGLVHISQ+S ERV K +D + EG  + VK+LD D RG+
Sbjct: 596 YEGTVARIVDFGAFVNILPGKDGLVHISQISNERVEKVTDYLAEGQVIKVKVLDVDQRGR 655

Query: 683 IKLSMKVVDQ 692
           IKLSMK +++
Sbjct: 656 IKLSMKEMEE 665


>gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
 gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
          Length = 705

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/687 (49%), Positives = 473/687 (68%), Gaps = 12/687 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG IARQ+  AV+A+ G+T VL +VV  +  + G+DFFPLTVNYQERTY
Sbjct: 8   FKYGQHTVTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTVNYQERTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E E L  R+IDR IRPLF   +KNE QV+  V+  + E  P +
Sbjct: 68  AAGKIPGGFFKREGRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVNPEIQPDL 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+++  SAAL +SG+PF GP+  A++ + N +Y+LNP   E  +  LDL V+GT++AVLM
Sbjct: 128 VALIGVSAALSISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLDLVVAGTENAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA------KMCAKEPIVIDSKDFSKLE 241
           VE EA  LSE+ +L A+++GH + + VIEAI + A      K     P+V      ++L+
Sbjct: 188 VESEAEILSEEQMLGAVMYGHEQMQVVIEAIKEFAAEVNTPKWDWTAPVV-----NTELK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            +++++   DL  +  I EK  R  ++  +K  +++    E++  N  E   +   ++  
Sbjct: 243 AKIAELASGDLAEAYQIQEKTERYAKVGGIKSAVIAKLQEENAELNTREAGELLASLEKN 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD + R+DGRD E +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 303 IVRNRILDGEPRIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL+G   + F+MHYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 RIDSLTGETIDRFLMHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNADEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLV DGD  +ILSDI G
Sbjct: 423 TVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGDRSVILSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+ +GITA+QMD+KI GI+++IM  AL QAK  RLHIL+ M + ++ 
Sbjct: 483 DEDHLGDMDFKVAGSSAGITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQAIAT 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           +R  + EF PR+  + I  D+I+++IG GG  IR + E+TG  + I+DDGTVKIA++S  
Sbjct: 543 NRDDVSEFAPRIHTIKISTDKIKDIIGKGGATIRALTEETGTTIEIEDDGTVKIAATSNE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + +AA E I  +T   EV +IY+G+VV++ DFGAFV+    +DGLVHISQ++ ERV K +
Sbjct: 603 QAQAAIERIHQLTAEVEVGQIYEGKVVRLADFGAFVNILPGKDGLVHISQITQERVNKVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D +     V VK+L+ D +G+I+LS+K
Sbjct: 663 DHLSVEQVVKVKVLEVDRQGRIRLSIK 689


>gi|326559316|gb|EGE09743.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           7169]
 gi|326569953|gb|EGE20000.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC1]
 gi|326572889|gb|EGE22874.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           CO72]
 gi|326573663|gb|EGE23621.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           O35E]
          Length = 695

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/700 (50%), Positives = 479/700 (68%), Gaps = 14/700 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++  ++   G +V++A VV   ++  GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIV---IDS 234
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+    AK+  V   I+ 
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNAKQEFVAPAINE 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291
           +  ++L+E+ +  + E   ++     K  R  ++D+L  + +     E S   +    +I
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +FE ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV
Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  
Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP   +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+
Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HI
Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           LN M++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+G
Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T++I  +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ
Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +S ERV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
          Length = 703

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/690 (47%), Positives = 470/690 (68%), Gaps = 12/690 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+  AV+A+  +T VL TVV  +  K  QDFFPLTVNYQE
Sbjct: 5   TKSFQYGQHTVTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE QV+I VM  + +  
Sbjct: 65  KTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSANPDIP 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             ++SM+  SAAL +SG+PF GP+  A+V Y +G+Y+LN R++E   S LDL V+GT+ A
Sbjct: 125 TDIISMIGTSAALAISGIPFNGPIGAARVGYTDGEYILNTRVEEQADSDLDLVVAGTEGA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF------S 238
           VLMVE EA+ LSEDV+L A++FGH + + V+ A+ + A   +     ID  D+      +
Sbjct: 185 VLMVESEADVLSEDVMLGAVMFGHEQLQTVVTAVKEFAANVS-----IDKWDWKPEAENT 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L++++  + + ++  +  I +K  R   +    +K      +E  + ++ E+ ++  D+
Sbjct: 240 TLKDKVKALAEAEMVAAYQISDKLARKDAVTAATEKARDAILAEDETQDKKEVSNLLHDL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++ VVR+ +L  + R+DGRD + +R +    G+L RTHGS++F RG+TQAIV  TLGT  
Sbjct: 300 ESDVVRSRILAGEPRIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTER 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +
Sbjct: 360 DAQMIDELQGRRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  ++F++LSD
Sbjct: 420 FPYVVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHILN M + 
Sbjct: 480 ILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R +L EF PR+  + +  D+IR+VIG GG +IR I E++   + I+DDGT+KI ++
Sbjct: 540 IGGHREELSEFAPRIYTVKVDQDKIRDVIGKGGAMIRSITEESDTNIEIEDDGTIKIFAT 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A   I  +T   EV K Y G++ +++DFGAFV     ++GLVHISQ++ ERV 
Sbjct: 600 ERAKADIAISKIEQVTAEIEVGKTYHGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVN 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K +D + EG  + VK+++ D + +++LS+K
Sbjct: 660 KVTDYLTEGAMIDVKVMEIDRQNRVRLSIK 689


>gi|119944587|ref|YP_942267.1| polynucleotide phosphorylase/polyadenylase [Psychromonas ingrahamii
           37]
 gi|187611274|sp|A1ST53|PNP_PSYIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119863191|gb|ABM02668.1| Polyribonucleotide nucleotidyltransferase [Psychromonas ingrahamii
           37]
          Length = 698

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/688 (48%), Positives = 473/688 (68%), Gaps = 2/688 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETG +ARQ+  AV+ +  +T V  +VV   +    +DFFPLTVNYQE+TY
Sbjct: 8   FQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTVNYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+ +RE RP+E+E LI+R+IDR +RPLF   +KNE QVI  V+  + E +P V
Sbjct: 68  AAGKIPGGFFKREGRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSINPEVNPDV 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           V+M+A SAAL +SG+PF+GP+  A+V Y  G+Y+LNP   E + S L+L VSGT +AVLM
Sbjct: 128 VAMIATSAALSISGMPFKGPIGCARVGYKEGEYLLNPTKTELETSDLNLVVSGTDNAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EA  LSEDV+L A++FGH++ + V+E+I + A   A+      +   ++ L+  ++ 
Sbjct: 188 VESEAGILSEDVMLGAVVFGHDQQQIVVESIKEFAAEVARPAWNWAAPARNEALDAAIAT 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
             +     +  I +K  R   I  +  ++     +   +    +I     D++  VVRT 
Sbjct: 248 EAQARFEQAYQISDKGDRYDAIKAITSEVKEKLLASDETLEAKQIGEYLHDLEKTVVRTR 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++  + R+DGRD E++R +  + G+L RTHGS+LF RG+TQA+V  TLGT+ D Q +DS+
Sbjct: 308 IIKGEPRIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSI 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G ++++F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+V
Sbjct: 368 MGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPSLEEFPYTVRVV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+G++F++LSDI GDEDHL
Sbjct: 428 SEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGEEFVVLSDILGDEDHL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + L + R  +
Sbjct: 488 GDMDFKVAGTTEGITALQMDIKIEGITREIMQIALNQAKAARLHILTVMDQALPQGRADI 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            +F PR+  + I  D+IR+VIG GG VIR + E+TG  + I+DDGTVKIA++S  + + A
Sbjct: 548 SQFAPRIHTIKINTDKIRDVIGKGGAVIRSLCEETGTTIEIEDDGTVKIAATSGEQADDA 607

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
              I+++T   EV  IY G+VV++ DFGAFV+    +DGLVHISQ+  ERV K SD +KE
Sbjct: 608 INRIKALTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVSDHLKE 667

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           G  V VK+L+ D +G+++LS+K   + T
Sbjct: 668 GQEVKVKVLEVDRQGRVRLSIKEAAEKT 695


>gi|239947698|ref|ZP_04699451.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921974|gb|EER21998.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 748

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/696 (47%), Positives = 484/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V  +  K+G  FFPLT
Sbjct: 1   MFNEITKSVTWDGKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + +     + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  ++++    I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIKQVFVIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  EV  M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEVMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVC SSLALM AGVPI  PVAGIAMGL+K+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDG+V + +
Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNTDKD 696


>gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
           33638]
 gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
           33638]
          Length = 706

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/683 (48%), Positives = 465/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEAQILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 248 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690


>gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
 gi|187611438|sp|Q1CM51|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
          Length = 705

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/683 (48%), Positives = 466/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASA L LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 248 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQDVPVKVMEVDRQGRIRLSIK 690


>gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
 gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
          Length = 701

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/688 (51%), Positives = 476/688 (69%), Gaps = 13/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I +    L +ETG IARQ+ GAVL +  +TVVL TVV  +  K  QDFFPLTV+YQE+TY
Sbjct: 8   IAFGKHQLTIETGEIARQASGAVLVSLDDTVVLVTVVGRKDAKPEQDFFPLTVDYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + +RE R +E EIL SR+IDR +RPLF + + NE Q+I  VM  D E    +
Sbjct: 68  AAGKIPGSFFKREGRASEKEILTSRLIDRPLRPLFPESFYNEVQIIATVMSSDSEIDSDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            S++ ASAAL +SG+PFEGP+  A+V Y NGQY+LNP   E   S +DL V+GT  AVLM
Sbjct: 128 PSLIGASAALAISGIPFEGPIAAARVGYANGQYLLNPTKTELVTSQMDLVVAGTDRAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE---EM 244
           VE EA QLSE+V+L A++FGH + + VI AI+++A+   K   + D    +K E    ++
Sbjct: 188 VESEAQQLSEEVMLGAVMFGHEQFQIVINAINEMAEAVGKP--MWDWTPPAKNEALIAQI 245

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKV 302
           +++ + +L+ +  I  K  R   I  +  K+++  S   E ++ NE     +F  ++AK+
Sbjct: 246 AELAEAELQAAYAIRSKQERTDAISAIHSKVLASVSPDLEKNAVNE-----LFGALEAKI 300

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L  + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV TLG+  D Q 
Sbjct: 301 VRGQILSGEPRIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQK 360

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           VD+L G   + FM+HYNF P ATGE  R+G+P RREIGHGRLA+RA+  VLP    F Y 
Sbjct: 361 VDALQGEFTDRFMLHYNFPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYA 420

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEITES+GSSSMA+VCG  L+++DAGVP+   VAGIAMGL+K+G+ F +LSDI GD
Sbjct: 421 VRIVSEITESNGSSSMASVCGGCLSMLDAGVPLKAHVAGIAMGLIKEGNRFAVLSDILGD 480

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAG+++GITA+QMD+KI GI+  IM  AL QAK GRLHIL  M + +S  
Sbjct: 481 EDHLGDMDFKVAGSENGITALQMDIKINGITREIMQAALSQAKEGRLHILGIMKESMSGV 540

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L EF PR+  M I P++IR+VIG GG VIR + E+TG  ++IDD G + I+S +   
Sbjct: 541 RSELSEFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDAGNITISSVNGEA 600

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E A++ I  I    EV KIY+G VVK++DFGA ++    +DGL+HISQ++ ERV    D
Sbjct: 601 GELAKKRIEDIAMDVEVGKIYEGPVVKLLDFGALINILPGKDGLLHISQIAHERVNSVGD 660

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +KEG  V VKLL+ DDRG++KLSMK +
Sbjct: 661 YLKEGQVVRVKLLEMDDRGRMKLSMKAL 688


>gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR5-3]
 gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR5-3]
          Length = 704

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/690 (49%), Positives = 472/690 (68%), Gaps = 12/690 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++ G+ + LETGRIARQ+ GAVL T   T VL TVV +++ ++G+DFFPL V+Y E
Sbjct: 5   TKTFQYGGQTVTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + Y+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QVI  VM  D    
Sbjct: 65  KAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVICTVMSADKHID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQD 183
           P + +M+  SAAL +SG PF GP+  A+V + + + Y+LNP  D+  GS L++ V+GT+D
Sbjct: 125 PDIPAMIGTSAALAISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGSKLEMVVAGTED 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238
           AVLMVE +A+QL+ED +L A++F H E + VI+A+ +LA    K     E   ID     
Sbjct: 185 AVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKPSWNWEAPAIDEALLG 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +E     M+K+DL  +  I +K  R  ++ ++++  V+  ++E     +  +   F+ +
Sbjct: 245 AVE----GMVKDDLGEAYRITDKSERYARVGEIREACVAELATEGGPSAD-LVKEYFKKV 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  ++  + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI  VTLG+  
Sbjct: 300 EKSMVRKRIIAGEPRIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTR 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +  VLP   +
Sbjct: 360 DAQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+D
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ V
Sbjct: 480 ILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNAV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  R    E  P +  + +  D+IR++IG GG +IR I E +GA V+I+DDGTV++   
Sbjct: 540 LAAPRTVTSENAPSMVTLKVDSDKIRDIIGKGGAMIRSITEHSGATVDIEDDGTVRVFGQ 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A  + A  MI  IT   EV  IY G+V +++DFGAFV+    +DGL+HISQ++ ERV 
Sbjct: 600 DQASRDKAVAMIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             SD + EG  V VK+LD D RG+IKLS+K
Sbjct: 660 NVSDHLSEGQEVRVKVLDVDQRGRIKLSIK 689


>gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
           ATCC 33641]
 gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
           ATCC 33641]
          Length = 706

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/687 (48%), Positives = 468/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K     +P V++    +++ 
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEALHARVA 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E     + +  R++    EK  R  Q+D +K  +     ++  + +  EI  +   ++  
Sbjct: 248 ELAEVRLGDAYRIT----EKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKD 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 364 NIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPSPSEFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   
Sbjct: 544 PRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGD 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+++ D +G+I+LS+K
Sbjct: 664 DYLQMGQEVPVKVMEVDRQGRIRLSIK 690


>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
           ATCC 19718]
 gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 708

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/696 (48%), Positives = 477/696 (68%), Gaps = 17/696 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I +    L +ETG IA+Q+ GAV+ +  +TVVL T V D+  K GQDFFPLTV+YQE+ Y
Sbjct: 8   ITYGRHTLTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTVDYQEKFY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G+IPG + +RE RP+E E L SR+IDR IRPLF   + NE QV+  V+  D E    +
Sbjct: 68  SAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSDTEIDADI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP---RLDEDQGSLDLFVSGTQDAV 185
            +M+  SAAL+LSG+PF+GPV  A+V YIN +Y+LNP   +L E Q  L+L V+GTQ AV
Sbjct: 128 PAMIGTSAALILSGIPFDGPVGAARVGYINNEYILNPTTTQLKESQ--LNLVVAGTQKAV 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           LMVE EA++LSEDV+L A+ +GH++ + VI+ I++LA         + + D+   E+++S
Sbjct: 186 LMVESEADELSEDVMLGAVTYGHDQMQQVIDMINELADEAG-----VTAWDWQPAEQDLS 240

Query: 246 ------QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
                 Q+ + DLR +  + +K  R + I+++ +++ +          +E  +  +   +
Sbjct: 241 LVEKVTQLAEADLRNAFRLKQKSARVEAINEIWQRVFTELKVGTEEGPSEQAVREIGFAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR  +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+ + TLGT  
Sbjct: 301 EARIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G     FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  V+P   +
Sbjct: 361 DEQKIDALQGDYSERFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVIPPVEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y++R+VSE+TES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FGYSMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEGNRFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGTEHGITALQMDIKIQGITKEIMQVALLQAKEGRLHILEIMKQS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  +R  +    PR+    I P++IR+VIG GG VIR + E+TG  ++I DDG+V IA  
Sbjct: 541 LPIARESISVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIACV 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S    E AR+ I  IT   EV +IY+G V+K++DFGA V     +DGL+HISQ++ ERV 
Sbjct: 601 SSEGGEQARKRIEDITADVEVGRIYEGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             +D +KEG TV VK+L+ D++G+++LSMK    +T
Sbjct: 661 NVADHLKEGQTVRVKVLEADEKGRLRLSMKAASIST 696


>gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae
           MTU5]
 gi|187611281|sp|A8F1P3|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae
           MTU5]
          Length = 745

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L TVV     K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCTVVVANKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPEIPVDILAIIGASAALSLSPAPYLEMVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + +     + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M  PSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKVPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV I +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICEISGAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
              S V+K+GD V VKL+ FD++GK KL++K  D+    N  KP
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704


>gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3]
 gi|187611298|sp|A0KU01|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3]
          Length = 699

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/689 (49%), Positives = 479/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + + + S L+L V+GT+ AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLNLVVAGTESAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242
           E EA  L E+V+L ++++GH++ + VI+AI++      K       P+  ++     L  
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA-----LVA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ ++ ++ L  +  I  K  R  Q+  +K        + +   +  E+  +   ++ KV
Sbjct: 244 QVKELAEDGLAQAYQIQVKQDRYAQVAVVKAAAKEALLAANPDVDLREVDGLLGSLEKKV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++  + R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY+
Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYS 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+   
Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +A RE IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 602 -DATREAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIK 689


>gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7]
 gi|123131654|sp|Q0HXR0|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7]
          Length = 699

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/689 (49%), Positives = 477/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +   S L+L V+GT+ AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAGTEGAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242
           E EA  L E+V+L ++++GH++ + VI+AI++      K       P+  ++     L  
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA-----LVA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ ++ +  L  +  I  K  R  Q+  +K        + +   +  E+  +   ++ KV
Sbjct: 244 QVKELAEAGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLEKKV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++  + R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY+
Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFPYS 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+   
Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 602 -EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIK 689


>gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis
           Et1/99]
 gi|226702651|sp|B2VGN7|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 710

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/687 (48%), Positives = 467/687 (67%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQGFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH++ + VI+ I+ L     K     +P  ++      L 
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + +  EI  +   ++  
Sbjct: 244 SRITALAESRLSDAYRITEKQERYAQVDVIKSETSAALLAEDEALDAAEISDLLHALEKD 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 364 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDENNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISG 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
 gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           Nepal516]
          Length = 731

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/683 (48%), Positives = 466/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 34  KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 93

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 94  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 153

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASA L LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 154 IVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 213

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 214 MVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVA 273

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 274 ELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKNVVRS 333

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 334 RVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDE 393

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 394 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRV 453

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 454 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDH 513

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 514 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 573

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 574 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 633

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 634 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 693

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 694 MGQDVPVKVMEVDRQGRIRLSIK 716


>gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter
           sulfurreducens PCA]
 gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           PCA]
          Length = 697

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 465/687 (67%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V +E+ GR + + TG+ A+Q+ GAV+ + G+TVVL T V  +S ++GQDFFPLTVNYQ
Sbjct: 4   HKVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP++NE L SR IDR IRPLF + + N+TQ++  V+  D ++
Sbjct: 64  EKAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++M+ ASAAL +S +PF GP+ G +V  ++GQ+V NP +++ ++  L++ V+ ++D
Sbjct: 124 DPGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           AV+MVE  A + SE  VL+AI FGH   +P+IEA + L K+    K  +   S D   L+
Sbjct: 184 AVIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVD-EALK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +  +    ++ +  I  K  R  +I ++  + +     E+    E EI     D + +
Sbjct: 243 TRVKDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPEYEG-RESEIKGFLGDFEYE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  ++    R+DGRD+ T+R IS +V +L R HGS+LF RG+TQA+V  TLGT  DEQ
Sbjct: 302 LVREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  R  F++HYNF P + GE S   AP RREIGHG LA RA+  V+P+   FPY
Sbjct: 362 RIDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+I ES+GSSSMATVCG +LA+MDAGVPI  PVAGIAMGL+K+G+   ILSDI G
Sbjct: 422 TIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT++G+TA+QMD+KI G++  IM  AL QA+ GRLHIL +M++ ++ 
Sbjct: 482 DEDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAA 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L  + PR+  + +  D+IR+VIG GGK IRGI E TG  ++I+D G + IAS+S  
Sbjct: 542 PRTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MIR +T   E  K+Y G V KVMDFGAFV      DGLVHIS+L TERV   +
Sbjct: 602 ACDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVT 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DV+ EGD V VK +  D +GKIKLS K
Sbjct: 662 DVLNEGDKVLVKCIGIDKQGKIKLSRK 688


>gi|296113971|ref|YP_003627909.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
           RH4]
 gi|295921665|gb|ADG62016.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
           RH4]
          Length = 696

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/694 (50%), Positives = 476/694 (68%), Gaps = 14/694 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++  + + LETGRIARQ++  ++   G +V++A VV   ++  GQ+FFPLTVNYQE+ 
Sbjct: 8   EFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLTVNYQEKM 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  D      
Sbjct: 67  YASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISSDKTQDAD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+GT+ AVL
Sbjct: 127 IAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVAGTKSAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDSKDFSKLE 241
           MVE EA +LSED +L A+++GH + + VI+ I+  A+     K+  V   I+ +  ++L+
Sbjct: 187 MVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINEELNTQLK 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFEDI 298
           E+ +  + E   ++     K  R  ++D+L  + +     E S   +    +I  +FE +
Sbjct: 247 EQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELFETL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLGT  
Sbjct: 303 KYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTR 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP   +
Sbjct: 363 DVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPAAER 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LSD
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M++V
Sbjct: 483 ILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAMNEV 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I  +
Sbjct: 543 IATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRIFGT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S ERV 
Sbjct: 603 DKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             SD +KEG TV V++ D D+RG+IKL+MK V+Q
Sbjct: 663 NVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVEQ 696


>gi|119504363|ref|ZP_01626443.1| Polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2080]
 gi|119459871|gb|EAW40966.1| Polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2080]
          Length = 714

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/694 (48%), Positives = 468/694 (67%), Gaps = 12/694 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETGRIARQ+ GAV+ T G T VL TVV  R ++ GQDFFPL+V+Y E+ Y
Sbjct: 8   FQYGDHEITLETGRIARQASGAVMVTMGNTSVLCTVVAAREMRAGQDFFPLSVHYIEKRY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE+RP+E E L SR+IDR +RPLF   + NE QV+  VM  D E+ P +
Sbjct: 68  AVGKIPGGFFKREARPSEKETLTSRLIDRPVRPLFPNGFMNEVQVVCTVMSADSETDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            +M+  SAAL +SG PF GP+ GA+V +   + Y+LNP     + S LD+ V+GT +AVL
Sbjct: 128 PAMIGTSAALAISGCPFNGPIGGARVGFTEAKGYLLNPNYSALKNSQLDMVVAGTSEAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA +LSED +L A++F H E + VI+AIS+L +   K         +D    + +E
Sbjct: 188 MVESEAQELSEDQMLGAVLFAHQEMQTVIKAISELVEEAGKPRWDWTAAPVDEALKAAVE 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E    + E  R++    EK  R +++ +++   ++  + E     + +I   F+ ++  
Sbjct: 248 GEAKSGLGEAYRIT----EKAARYERVGEVRDATIAALAVEGGPSKD-DIKDQFKALEKN 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  ++  + R+DGRD  TVR I  +V +L + HGS+LF RG+TQAI  VTLG+  D Q
Sbjct: 303 IVRQRIISGEPRIDGRDGRTVRPIVCEVDVLDKAHGSALFTRGETQAIGAVTLGSSRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +   LP   +FPY
Sbjct: 363 IIDALEGERRDPFMLHYNFPPYSVGEAGRIGFTSRREIGHGRLARRGLAATLPTEEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+DI G
Sbjct: 423 TVRVVSEITESNGSSSMASVCVGSLAMMAAGVPVKAPVAGIAMGLVKEGNQFAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ VL+ 
Sbjct: 483 DEDHLGDMDFKVAGTSGGITALQMDIKIEGINEQIMEIALEQAMQARLHILGQMNSVLAA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + E  P +  + I  D+IR++IG GG  IR I E++GA V+I+DDGTVK+   +  
Sbjct: 543 PREIVSENAPSMVQLKIDSDKIRDIIGKGGATIRSITEESGATVDIEDDGTVKVFGVTKE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A   I +IT   EV  IY+G + +++DFGAFV     +DGLVHISQ++ ERV   +
Sbjct: 603 SRDHAVNAIMAITAEAEVGAIYEGTIARIVDFGAFVTILPGKDGLVHISQIAEERVENVT 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D +KEG+TV VK+LD D RG+IKLS+K V  + G
Sbjct: 663 DYLKEGETVRVKVLDVDQRGRIKLSIKEVAADEG 696


>gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica]
          Length = 711

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 13  KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 72

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 73  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 133 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 192

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 193 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 252

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 253 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVVRS 312

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 313 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 372

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 373 LMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 432

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GDEDH
Sbjct: 433 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 492

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 493 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 552

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  ++I+ DGT+KIA++   + + 
Sbjct: 553 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIAATDGDKAKH 612

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 613 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQ 672

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LSMK
Sbjct: 673 MGQEVPVKVIEVDRQGRIRLSMK 695


>gi|8928245|sp|O34275|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 706

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/683 (48%), Positives = 467/683 (68%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALHARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 248 ELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKDVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  ++I+ DGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LSMK
Sbjct: 668 MGQEVPVKVIEVDRQGRIRLSMK 690


>gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus bovienii SS-2004]
 gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus bovienii SS-2004]
          Length = 714

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/687 (48%), Positives = 467/687 (67%), Gaps = 6/687 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKAGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE Q+I  V+  +   +P 
Sbjct: 68  YAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPLVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT  AVL
Sbjct: 128 IVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA  L+E+ +L A++FGH + + VI+ I+ L     KE      +  ++ L + ++
Sbjct: 188 MVESEAELLTEEQMLGAVVFGHEQQQIVIDHINALVAETGKEKWDWAPESINQPLHDRVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIVSVFEDIQAK 301
           ++ +  L  +  I EK  R  Q++ +K+++ +   +E         + E++ V   ++  
Sbjct: 248 ELAESRLGDAYRITEKQERYAQVNTIKEEVSAIIVAEAVEKGVELEKSEVLDVLSVLEKN 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L  + R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT  D Q
Sbjct: 308 VVRGRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQ 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 368 VIDELMGERADRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTANEFPY 427

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 428 TIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 487

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  M + +  
Sbjct: 488 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGARLHILGVMEQAIQS 547

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 548 PRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDSD 607

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +   A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 608 KAHHAIRRIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 667

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++    V VK+L+ D +G+I+LSMK
Sbjct: 668 DYLQLAQEVPVKVLEIDRQGRIRLSMK 694


>gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4]
 gi|123130662|sp|Q0HLF6|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4]
          Length = 699

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/689 (49%), Positives = 477/689 (69%), Gaps = 18/689 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVNYQE+TYA
Sbjct: 9   EYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D +  P ++
Sbjct: 69  AGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +   S L+L V+GT+ AVLMV
Sbjct: 129 SMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAGTEGAVLMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEE 242
           E EA  L E+V+L ++++GH++ + VI+AI++      K       P+  ++     L  
Sbjct: 189 ESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA-----LVA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ ++ +  L  +  I  K  R  Q+  +K        + +   +  E+  +   ++ KV
Sbjct: 244 QVKELAEVGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLEKKV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++  + R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQK 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FPY+
Sbjct: 364 IDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +   
Sbjct: 484 EDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+   
Sbjct: 544 RDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EA +E IR I ++    EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 602 -EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SD ++    V VK+++ D +G+++LS+K
Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIK 689


>gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. Iowa]
 gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii
           str. Iowa]
          Length = 748

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E +P++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  +  K  R   +D + +K+ ++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAMKSKQERSTNLDLITEKVFTHFVSDIENKKYSHYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESGILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTGEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
              S V+K+GD V VKL+ FD++GK KL++K  D+    N  KP
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKFSNNTKP 704


>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
 gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
          Length = 707

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/683 (48%), Positives = 464/683 (67%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT  AVL
Sbjct: 128 IVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMS 245
           MVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++ L   ++
Sbjct: 188 MVESEADILSEDQMLGAVVFGHEQQQIVIENINALVAEAGKPKWDWHAEPVNEALRARVA 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  VVR+
Sbjct: 248 ELATARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSVEKDVVRS 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  A FPYT+R+
Sbjct: 368 LMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNAADFPYTVRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  
Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   + + 
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKH 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++
Sbjct: 608 AIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LS+K
Sbjct: 668 MGQEVPVKVMEVDRQGRIRLSIK 690


>gi|326564308|gb|EGE14538.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           103P14B1]
 gi|326574715|gb|EGE24651.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           101P30B1]
          Length = 695

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/700 (49%), Positives = 478/700 (68%), Gaps = 14/700 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++  ++   G +V++A VV   ++  GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+     K+  V   I+ 
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291
           +  ++L+E+ +  + E   ++     K  R  ++D+L  + +     E S   +    +I
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +FE ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV
Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  
Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP   +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+
Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HI
Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           LN M++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+G
Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T++I  +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ
Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +S ERV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|326568253|gb|EGE18335.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC8]
          Length = 695

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/700 (49%), Positives = 478/700 (68%), Gaps = 14/700 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++  ++   G +V++A VV   ++  GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+     K+  V   I+ 
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291
           +  ++L+E+ +  + E   ++     K  R  ++D+L  + +     E S   +    +I
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELATEALVLAGDETSDDYADKVAQI 295

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +FE ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV
Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  
Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP   +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+
Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HI
Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           LN M++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+G
Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T++I  +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ
Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +S ERV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 656 ISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
 gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
          Length = 714

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/701 (48%), Positives = 482/701 (68%), Gaps = 15/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H    ++    + LETG IARQ+ G+V+ T  +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFEIHKETFQYGQHTVTLETGEIARQAGGSVIVTVDDTVVLATVVAAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA G+IPGG+ +RE + TE E L +R+IDR +RPLF + + NE QV + VM  
Sbjct: 61  VDYVEKFYAAGRIPGGFFKREGKGTEQETLNARLIDRPLRPLFPEGFFNEVQVTLTVMSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E +P + +M+ ASAAL ++G+PF GPV GA+V YIN QYVLNP   + + S +DL V+
Sbjct: 121 NPEVNPDIPAMLGASAALSIAGIPFNGPVGGARVGYINDQYVLNPTATQLKDSKMDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT+ AVLMVE EA++LSE+++L  I+FGH + +  I AI  L     K     +P  ++ 
Sbjct: 181 GTEAAVLMVESEAHELSEEIMLGGIMFGHEQMQAAINAIHALTAKAGKPEWDWKPAPVNE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEG 289
                L   ++++  E L  +  + EK  R +++ ++  ++ +   +     + +     
Sbjct: 241 P----LLAAVTELAGEKLAAAYKMTEKQARSQRLKEISAEVAAELPAKLTEEQRAGITNA 296

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           ++  +   ++AK+VR  +L+ + R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+
Sbjct: 297 DVGDIMFGLEAKIVRGQILNGEPRIDGRDTRTVRPITVRTGVLPRAHGSALFTRGETQAL 356

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT  DEQ +D+++G  R+ FM HYN  P ATGE  RMGAP RREIGHGRLARRA+
Sbjct: 357 VVTTLGTGRDEQMIDAVAGEYRDRFMFHYNMPPYATGECGRMGAPKRREIGHGRLARRAV 416

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             +LP    F YT+R+VSEITES+GSSSMA+VCG +L+LMDAGVP+ + VAGIAMGL+K+
Sbjct: 417 EMMLPAPEDFQYTMRVVSEITESNGSSSMASVCGGALSLMDAGVPLKQLVAGIAMGLIKE 476

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            + F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GR+
Sbjct: 477 ENKFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRM 536

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL  M +    +  +L  + PR+  M I P++IR+VIG GG  IRGI EQTGA ++I +
Sbjct: 537 HILGIMKEATGGNVGELSAYAPRMITMKINPEKIRDVIGKGGATIRGITEQTGASIDIKE 596

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG++ IAS      E A+++I  IT   EV  +Y+G V+K++DFGA V     +DGL+HI
Sbjct: 597 DGSITIASVDGDAGERAKKLIEDITAEVEVGAVYEGTVLKLLDFGAIVSVLPGKDGLLHI 656

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SQ++ ERV    D +KEG  V VK+L+ D++G+++LSMK +
Sbjct: 657 SQIANERVNTVGDFLKEGQVVKVKVLEADEKGRLRLSMKAL 697


>gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           KN400]
          Length = 740

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 465/687 (67%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V +E+ GR + + TG+ A+Q+ GAV+ + G+TVVL T V  +S ++GQDFFPLTVNYQ
Sbjct: 47  HKVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQ 106

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP++NE L SR IDR IRPLF + + N+TQ++  V+  D ++
Sbjct: 107 EKAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDN 166

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++M+ ASAAL +S +PF GP+ G +V  ++GQ+V NP +++ ++  L++ V+ ++D
Sbjct: 167 DPGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRD 226

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           AV+MVE  A + SE  VL+AI FGH   +P+IEA + L K+    K  +   S D   L+
Sbjct: 227 AVIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVD-EALK 285

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +  +    ++ +  I  K  R  +I ++  + +     E+    E EI     D + +
Sbjct: 286 TRVKDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPEYEG-RESEIKGFLGDFEYE 344

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  ++    R+DGRD+ T+R IS +V +L R HGS+LF RG+TQA+V  TLGT  DEQ
Sbjct: 345 LVREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQ 404

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  R  F++HYNF P + GE S   AP RREIGHG LA RA+  V+P+   FPY
Sbjct: 405 RIDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPY 464

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+I ES+GSSSMATVCG +LA+MDAGVPI  PVAGIAMGL+K+G+   ILSDI G
Sbjct: 465 TIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILG 524

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT++G+TA+QMD+KI G++  IM  AL QA+ GRLHIL +M++ ++ 
Sbjct: 525 DEDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAA 584

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L  + PR+  + +  D+IR+VIG GGK IRGI E TG  ++I+D G + IAS+S  
Sbjct: 585 PRTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKE 644

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MIR +T   E  K+Y G V KVMDFGAFV      DGLVHIS+L TERV   +
Sbjct: 645 ACDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVT 704

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DV+ EGD V VK +  D +GKIKLS K
Sbjct: 705 DVLNEGDKVLVKCIGIDKQGKIKLSRK 731


>gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae
           ESF-5]
 gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae
           ESF-5]
          Length = 748

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
              S V+K+GD V VKL+ FD++GK KL++K  D+    N  KP
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704


>gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           bronchiseptica RB50]
 gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella
           bronchiseptica RB50]
          Length = 719

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/699 (47%), Positives = 484/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG +ARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + N+ QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSE+++L  ++FGH + +  I AI  L +   K     D +   K
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQTAINAIHDLVRDAGKPDW--DWQPAPK 238

Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----I 291
            E  ++ +    +E L  +  I EK  R  ++ ++   + +  + + +   +       +
Sbjct: 239 NEALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGV 298

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            ++  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV
Sbjct: 299 DNILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVV 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+ P
Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLP 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP +  VAG+AMGL+ D  
Sbjct: 419 LLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSG 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDG
Sbjct: 539 LGKMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+ IAS    + + A+  I  +T   EV +IY G V++++DFGA V     RDGL+HIS+
Sbjct: 599 TIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++  R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 659 IANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAI 697


>gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           Tohama I]
 gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           parapertussis 12822]
 gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
           Tohama I]
 gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella
           parapertussis]
 gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           CS]
          Length = 719

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/699 (47%), Positives = 484/699 (69%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG +ARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + N+ QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSE+++L  ++FGH + +  I AI  L +   K     D +   K
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDW--DWQPAPK 238

Query: 240 LEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----I 291
            E  ++ +    +E L  +  I EK  R  ++ ++   + +  + + +   +       +
Sbjct: 239 NEALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGV 298

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            ++  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV
Sbjct: 299 DNILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVV 358

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+ P
Sbjct: 359 ATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLP 418

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP +  VAG+AMGL+ D  
Sbjct: 419 LLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSG 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHI
Sbjct: 479 KFAVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDG
Sbjct: 539 LGKMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+ IAS    + + A+  I  +T   EV +IY G V++++DFGA V     RDGL+HIS+
Sbjct: 599 TIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++  R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 659 IANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAI 697


>gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira
           crunogena XCL-2]
 gi|123755229|sp|Q31GJ9|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena
           XCL-2]
          Length = 694

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 471/687 (68%), Gaps = 5/687 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    ++ ETG IARQ+DGAV+   G+T +L TVV  ++ K GQDFFPLTV YQE+ Y
Sbjct: 8   FQYGKHEVRFETGEIARQADGAVMVAMGDTQLLVTVVGAKNAKAGQDFFPLTVQYQEKAY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QVI  V+  D E    V
Sbjct: 68  AAGRIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLDPEIGTEV 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+  SAAL +SG+PF+GP+  A V Y +  Y+LNP   E Q S L+L V+GT DAVLM
Sbjct: 128 PAMLGTSAALSISGIPFDGPIGAAVVGYKDNDYILNPSSQELQESDLELSVAGTSDAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246
           VE EA++LSE+++L A++FGH + +  I+AI +L     K     ++ +    L+ ++  
Sbjct: 188 VESEASELSEEIMLGAVMFGHEQMQVAIDAIKELKAEVGKPAWNWEAAEEDIDLKTKVFD 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFEDIQAKVV 303
            I+ D+  +  I +K  R   ID  K K++   ++   +   ++ G+I  +   +Q ++V
Sbjct: 248 AIRSDIEAAYDIADKMDRYAAIDAAKTKVMEALAATEENPEGYDAGDIEKMVGKLQKEIV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++  + R+DGRD++T+R I  QVG+L + HGS+LF RG+TQAIVV TLGT +D + V
Sbjct: 308 RGRIIAGEPRIDGRDTQTIRSIDCQVGILPKVHGSALFTRGETQAIVVTTLGTEKDAKMV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+G+  + FM+HYNF P + GE  R+G+P RREIGHG LARR +  +LP   +FPYT+
Sbjct: 368 DDLTGSYNDRFMLHYNFPPYSVGECGRVGSPGRREIGHGMLARRGVAALLPTADEFPYTI 427

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEITES+GSSSMATVCG+S++LM AGVP++ P+AGIAMGLVK+   F +LSDI GDE
Sbjct: 428 RVVSEITESNGSSSMATVCGTSMSLMHAGVPLAAPIAGIAMGLVKEESGFAVLSDILGDE 487

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL+QAK GRLHIL EM K +  S 
Sbjct: 488 DHLGDMDFKVAGTEQGVTALQMDIKITGITQEIMHIALKQAKEGRLHILKEMEKAIGSSN 547

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             +    PR   + + P+++R +IG GG  IR I E+TG  + IDDDG VKIA+      
Sbjct: 548 QDVATTAPRFFTVKVKPEKVREIIGKGGATIRSITEETGVTIEIDDDGNVKIAAVDDESA 607

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            AA+  I  IT  PE+ K+Y  +VVK++DFGAFV +   R+GLVH+SQ++ ERV   ++ 
Sbjct: 608 NAAKARIAEITAEPEIGKVYDAKVVKIVDFGAFVSYMPGREGLVHVSQIADERVEDVNEY 667

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +KEG  + V+L D D +G++KLS+K V
Sbjct: 668 LKEGQEIKVRLTDVDKQGRVKLSIKAV 694


>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           Z2491]
 gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis Z2491]
 gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           WUE 2594]
          Length = 706

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii
           SP-6]
 gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii
           SP-6]
          Length = 767

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/702 (47%), Positives = 482/702 (68%), Gaps = 22/702 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + LETG I+RQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVTKTFQWGQHTVTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E+L SR+IDR +RPLF + + NE  V+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E+S  + +++ +SAAL +SG+PF GPV  A+V Y+NG+YVLNP   + + S +DL V+
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----------E 228
           GT+ AVLMVE EA+QL+E+V+L A+++GH + K  I AI++L +   K           E
Sbjct: 183 GTEAAVLMVESEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRDAGKPAWDWQPPARNE 242

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P++    +F   + E +  I+           K  R         ++    +     ++ 
Sbjct: 243 PLIAKVAEFGLAKIEAAYQIRN----------KQARTHACRAAYAEVKISLAEAGVVFDN 292

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            ++ ++  +++AK VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA
Sbjct: 293 VDVDNLLFELEAKTVRGQILQGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 352

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +VV TLGT +D Q +D+L+G  R+ F+ HYN  P ATGEV RMG   RRE GHGRLA+RA
Sbjct: 353 LVVATLGTDQDSQRIDALAGDFRDSFLFHYNMPPFATGEVGRMGTTKRRETGHGRLAKRA 412

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + P+LP   +F YT+R+VSEITES+GSSSMA+VCG  LA+MDAGVP+   VAGIAMGL+K
Sbjct: 413 LVPLLPPKDEFGYTIRVVSEITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIK 472

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G+ F +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  R
Sbjct: 473 EGNRFAVLTDILGDEDHLGDMDFKVAGTTAGVTALQMDIKIQGITKEIMQVALAQAKEAR 532

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL +M + +  +  ++  F PR+  M I P++IR+VIG GG VIR + E+TG +++I 
Sbjct: 533 LHILGKMVEAMGTANTEVSNFAPRLYTMKINPEKIRDVIGKGGSVIRALTEETGCQIDIG 592

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +DGT+ IAS+   + E A++ I  IT   E+ K+Y+G VVK++DFGA ++    +DGL+H
Sbjct: 593 EDGTITIASTDADKAELAKKRIADITAEAEIGKVYEGPVVKILDFGALINILPGKDGLLH 652

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ISQ++ +RV K +D + EG  V VK+L+ D++G+IKLSMK +
Sbjct: 653 ISQIAHQRVEKVTDFLTEGQVVKVKVLETDEKGRIKLSMKAL 694


>gi|326567242|gb|EGE17362.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           12P80B1]
          Length = 695

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/703 (49%), Positives = 475/703 (67%), Gaps = 20/703 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++  ++   G +V++A VV   ++  GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+           ++F  
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNT-----KQEFFA 234

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYV------RCKQIDDLKKKMVSYFSSEHS---SWNE 288
             + EE++  +KE    +  + E Y       R  ++D+L  + +     E S   +   
Sbjct: 235 PAINEELNTQLKEQF--TAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKV 292

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            +I  +FE ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA
Sbjct: 293 AQIKELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQA 352

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +VV TLGT  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR 
Sbjct: 353 LVVTTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRG 412

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  +LP   +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK
Sbjct: 413 VQAMLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVK 472

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G+ F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR
Sbjct: 473 EGERFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGR 532

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HILN M++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++ID
Sbjct: 533 IHILNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDID 592

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+GT++I  +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVH
Sbjct: 593 DNGTIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVH 652

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           ISQ+S ERV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 653 ISQISDERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           ymp]
 gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina
           ymp]
          Length = 725

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/686 (48%), Positives = 475/686 (69%), Gaps = 5/686 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + ++    + LETGRIARQ+ GAVL T   +  VL TVV  ++    + FFPL+V+YQE+
Sbjct: 30  QFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSVHYQEK 89

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P
Sbjct: 90  TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDP 149

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
            + SM+  SAAL +SG+PF GP+  A+V +  +  Y+LNP  ++    SLD+ V+GT+ A
Sbjct: 150 DIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVVAGTETA 209

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           VLMVE EA++L+ED +L A++F H E + VI+A+ + A    K      +    + L + 
Sbjct: 210 VLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAANTPLLDA 269

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKV 302
           +     E +  +  I  K  R  ++D+L++++++  + E    +   E+ + F +I+ + 
Sbjct: 270 IRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFGEIEYRT 329

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++D K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT  D Q 
Sbjct: 330 VRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQL 389

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  +LP+  +FPYT
Sbjct: 390 LDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYT 449

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLV +G+ F +L+DI GD
Sbjct: 450 IRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDILGD 509

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL+QA   RL+IL +M++V+S+S
Sbjct: 510 EDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQVISQS 569

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +   
Sbjct: 570 RTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKDA 629

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            EAA++ + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS +RV K +D
Sbjct: 630 AEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTD 689

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V+KEG  V V +LD D+RG+IKLS+K
Sbjct: 690 VLKEGQEVKVLVLDVDNRGRIKLSIK 715


>gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str.
           Malish 7]
 gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str.
           Malish 7]
          Length = 749

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/704 (47%), Positives = 484/704 (68%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGK+I+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
              S V+K+GD V VKL+ FD++GK KL++K  D+    N  KP
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704


>gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma
           proteobacterium HTCC2148]
          Length = 703

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/686 (48%), Positives = 464/686 (67%), Gaps = 4/686 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++  + + LETGRIARQ+ G+VL T   T VL TVV +++ + G+DFFPL V+Y E
Sbjct: 5   TKTFQYGDQTVTLETGRIARQATGSVLVTVENTSVLCTVVAEKTQRPGRDFFPLAVHYVE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TY+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  VM  D    
Sbjct: 65  KTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSADKHID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQD 183
           P + +M+  SAAL +SG PF GP+ GA+V + + + Y+LNP  ++ ++  LD+ V+GT D
Sbjct: 125 PDIPAMIGTSAALAISGAPFNGPIGGARVGFSDEKGYILNPTYEQLEESKLDMVVAGTAD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AVLMVE EA +LSED +L A++F H E + V++AI++L     K      + + ++ L  
Sbjct: 185 AVLMVESEAKELSEDQMLGAVLFAHQEMQTVVQAINELVAESGKPKWDWQADEINEELLA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +   +K DL  +  I EK  R +++ +++   +   + E     + EI  +F+ ++  +
Sbjct: 245 AVEGQVKNDLGEAYRITEKSARYERVGEVRSACLEALAVEGGPSAD-EIKDIFKSVEKSL 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L  + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI  VTLG+  D Q 
Sbjct: 304 VRKRILAGEPRIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D+L G +R+ FM+HYNF P + GE  R+G  SRRE+GHGRLARR +  VLP   +FPYT
Sbjct: 364 IDALHGERRDPFMLHYNFPPYSVGEAGRVGFTSRREVGHGRLARRGLAAVLPNQEEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VC  SL LM AGVP+  PVAGIAMGLVKDG+ F +L+DI GD
Sbjct: 424 IRVVSEITESNGSSSMASVCAGSLGLMAAGVPLKAPVAGIAMGLVKDGNQFAVLTDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI+  IM  AL QA+  RLHIL +M++VL+E 
Sbjct: 484 EDHLGDMDFKVAGTAEGITALQMDIKIEGITAQIMETALDQAQHARLHILGQMNEVLAEG 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R    E  P +  + +  D+IR++IG GG  IR I EQ+GA V+IDDDGTV+I       
Sbjct: 544 RTVTSENAPSMMTLKVDSDKIRDIIGKGGATIRSITEQSGATVDIDDDGTVRIFGQDQMA 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  M+  IT   +V  +Y G V +++DFGAFV+    +DGLVHISQ++ ERV   +D
Sbjct: 604 RDKAVAMVEEITAEADVGAVYTGTVARIVDFGAFVNILPGKDGLVHISQIANERVENVTD 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            + EG  V VK+LD D RG+IKLS+K
Sbjct: 664 YLSEGQEVKVKVLDVDQRGRIKLSIK 689


>gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 702

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/686 (48%), Positives = 475/686 (69%), Gaps = 5/686 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + ++    + LETGRIARQ+ GAVL T   +  VL TVV  ++    + FFPL+V+YQE+
Sbjct: 7   QFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSVHYQEK 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P
Sbjct: 67  TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDP 126

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
            + SM+  SAAL +SG+PF GP+  A+V +  +  Y+LNP  ++    SLD+ V+GT+ A
Sbjct: 127 DIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVVAGTETA 186

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           VLMVE EA++L+ED +L A++F H E + VI+A+ + A    K      +    + L + 
Sbjct: 187 VLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAANTPLLDA 246

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKV 302
           +     E +  +  I  K  R  ++D+L++++++  + E    +   E+ + F +I+ + 
Sbjct: 247 IRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFGEIEYRT 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++D K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT  D Q 
Sbjct: 307 VRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQL 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  +LP+  +FPYT
Sbjct: 367 LDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYT 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLV +G+ F +L+DI GD
Sbjct: 427 IRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDILGD 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL+QA   RL+IL +M++V+S+S
Sbjct: 487 EDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQVISQS 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +   
Sbjct: 547 RTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKDA 606

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            EAA++ + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS +RV K +D
Sbjct: 607 AEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTD 666

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V+KEG  V V +LD D+RG+IKLS+K
Sbjct: 667 VLKEGQEVKVLVLDVDNRGRIKLSIK 692


>gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           961-5945]
 gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           G2136]
          Length = 706

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D +K G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
 gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
          Length = 748

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/704 (47%), Positives = 485/704 (68%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+++SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVVVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIHEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP  A
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  G+TA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGMTALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
              S V+K+GD V VKL+ FD++GK KL++K  D+    N  KP
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704


>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
 gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
          Length = 707

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           OX99.30304]
          Length = 706

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 701

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/702 (49%), Positives = 477/702 (67%), Gaps = 20/702 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+ GAV    G+TVVL  V  ++ +K GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGSQTVTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y++G YVLNP +   ++  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--------AKEPIV 231
           GT+ AVLMVE EA  L EDV+L A+++GH + + VI AI++LA           A EP  
Sbjct: 181 GTEQAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIRAINELADEVNPEVWDWKAPEP-- 238

Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGE 290
            +++  +K++E     I E  ++      K  R  +I +    + +   +E + +    E
Sbjct: 239 -NAELIAKVKEIAGDTIAEAFKIRS----KQARGAKIAEAWAAVQAALITEDTDTLAANE 293

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I  +F+ ++A VVR+ +LD + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ 
Sbjct: 294 IKGIFKHLEADVVRSQILDGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALA 353

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TLGT+ DEQ +D+LSG   + FM+HYNF P +TGE  RMGAP RREIGHGRLA+RA+ 
Sbjct: 354 VTTLGTQRDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALL 413

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            VLP+   F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G
Sbjct: 414 AVLPEPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEG 473

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLH
Sbjct: 474 NKFAVLTDILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLH 533

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M + +   + +L +  PR+  M I  D+IR+VIG GG+ IR +  +TG ++NI+DD
Sbjct: 534 ILGQMKEAVQGPQ-ELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDD 592

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVH 648
           GT+ IA+ S   +EAAR+ I  IT   EV K+Y G VVK++D   GA V     + GLVH
Sbjct: 593 GTITIAAVSADAVEAARKRIEEITAEVEVGKVYDGTVVKILDNNVGAIVDVLPGKGGLVH 652

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ISQ++ ERV   +D +K G  V VK L+ DDRG+++LS+K +
Sbjct: 653 ISQIAHERVKDVNDYLKVGQVVKVKALEVDDRGRVRLSIKAL 694


>gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha153]
          Length = 706

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
           ST-640]
 gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           lactamica 020-06]
          Length = 706

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
 gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
          Length = 706

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 479/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPE 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   SD ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
 gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
          Length = 695

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/695 (50%), Positives = 477/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV   + K GQDFFPLT
Sbjct: 1   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 120 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P   +      
Sbjct: 180 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        E+  +FED
Sbjct: 240 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 300 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 360 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 420 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 540 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 600 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 660 ANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 694


>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
 gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
          Length = 707

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 479/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   SD ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
 gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/671 (49%), Positives = 473/671 (70%), Gaps = 8/671 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           IARQ+  AV+    +T V  T V  + +K+GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP E E L++R+IDR +RPLF + + NE Q+I  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V +IN QYVLNP  DE + S LDL V+GT  AVLMVE EA  LSE+ +L
Sbjct: 122 VPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH++ + VI+ I++L K   KE      +  ++ L + ++ + +  +  +  I E
Sbjct: 182 GAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALHDRVAALAESRMGDAYRITE 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K++++    +E  + +  E+  +   ++ +VVR+ ++  + R+DGR+ +
Sbjct: 242 KQERYAQVDLIKEEVIGALVAEDENVDVSEVSDILAHLEKQVVRSRVIRGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G   + F+ HYNF
Sbjct: 302 MVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQAEFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + ++  R ++ EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQAINSPREEISEFAPRIYTIRINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP--- 617
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   +   A+E IR I D+    
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLK---AKEAIRRIEDITAEV 598

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ 
Sbjct: 599 EVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEI 658

Query: 678 DDRGKIKLSMK 688
           D +G+I+LSMK
Sbjct: 659 DRQGRIRLSMK 669


>gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
 gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
          Length = 713

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/703 (49%), Positives = 481/703 (68%), Gaps = 17/703 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++ T E ++  + + LETGRIARQ++  V+   G +V++A VV D + + GQ+FFPLT
Sbjct: 1   MFNIITKEFQYGNQQVTLETGRIARQANSVVVHMGGVSVLVAVVVKDEA-QAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE RP+E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYAAGKIPGGYGKREGRPSEMETLTSRLIDRPIRPLFPESYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D +    + +M+  SAAL +S  PF GP+  A+V +IN +YVLNP  +   Q SLDL V+
Sbjct: 120 DKKQDADIAAMIGTSAALAISSAPFNGPIGAARVGFINDEYVLNPNHEALKQSSLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVID 233
           GT  AVLMVE EA +LSED +L A+++GH + + VI+AI++ AK    +      P V +
Sbjct: 180 GTSSAVLMVESEAKELSEDQMLGAVLYGHAQQQVVIDAINEFAKEVGVQKTQFVAPAVNE 239

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEG 289
           +   + L+ + +  I E   +S    EK  R  ++D++K + +   +    +E  + N  
Sbjct: 240 ALQ-TTLQNQFAAAISEAYTIS----EKASRYTRLDEIKNQAIEALAGDAEAEDYADNVA 294

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           +I  +FE ++ + VR  +L  K R+DGRD +TVR +  QVG+L  THGS+LF RG+TQA+
Sbjct: 295 QIKELFETLKYRTVRDNILSGKPRIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQAL 354

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V  TLG   D   +D+L+GT+++ FM+HYNF   + GE  R   P RREIGHGRLARR +
Sbjct: 355 VTTTLGNSRDVNMIDTLAGTKQDHFMLHYNFPSYSVGETGRDSGPKRREIGHGRLARRGV 414

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             +LP + +FPY +RIVS+ITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+
Sbjct: 415 QAMLPDSDRFPYVIRIVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKE 474

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +LSDI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+  IM  AL QA  GR+
Sbjct: 475 GERFAVLSDILGDEDHLGDMDFKVAGSANGVTALQMDIKIEGITPEIMEKALHQAHAGRI 534

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HILN M++V+S SR ++    P   ++ I P++IR+VIG GG  IR + E+TGA ++IDD
Sbjct: 535 HILNAMNEVISTSRKEINAHAPNFAVIDIDPEKIRDVIGKGGATIRQLTEETGAVIDIDD 594

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +GT++I   + A  +AA   I +IT   EV K Y G+V ++++FGAFV+     DGLVHI
Sbjct: 595 NGTIRIFGENKAATKAAIAKIEAITAEVEVGKTYTGKVARIVEFGAFVNVLPNTDGLVHI 654

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQ+S  R+   +DV+KEG TV V + D D+RG+IKL+MK VDQ
Sbjct: 655 SQISDARIENVNDVLKEGQTVNVLVQDIDNRGRIKLTMKGVDQ 697


>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
 gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
          Length = 706

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 478/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHAKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPE 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   SD ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AYE]
 gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ACICU]
 gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB900]
 gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
 gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB056]
 gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB058]
 gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB059]
 gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii AYE]
 gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Acinetobacter baumannii ACICU]
 gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
          Length = 697

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/695 (50%), Positives = 477/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV   + K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        E+  +FED
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 696


>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           053442]
 gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           053442]
          Length = 706

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M0579]
 gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240149]
 gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 706

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
 gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
          Length = 707

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 479/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG Y+LNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPE 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   SD ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|269467861|gb|EEZ79604.1| Polyribonucleotide nucleotidyltransferase [uncultured SUP05 cluster
           bacterium]
          Length = 697

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/684 (48%), Positives = 476/684 (69%), Gaps = 15/684 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETGRIARQ+ GAVLA+  +T VL TVV  + ++ GQDFFPL+V+Y E+TYA GKIPG
Sbjct: 17  ITLETGRIARQAHGAVLASMDDTQVLVTVVGSKEMRPGQDFFPLSVDYIEKTYAAGKIPG 76

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RE+RP+E E L SR+IDR IRPLF   + NE QV+I V+  + E  P +++M+  S
Sbjct: 77  GFLKREARPSEKETLTSRLIDRPIRPLFPAGFMNEVQVLITVISANKEVDPDMIAMLGVS 136

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL +SG+PF GP+ GA+V + N +++LNP   E   S LD+ V+GT +AVLMVE EAN+
Sbjct: 137 AALSISGVPFSGPIGGARVGFKNDEFILNPTYSELADSDLDMVVAGTDEAVLMVESEANE 196

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249
           LSE+++L A++  H+E +  I+ I++            E    +      ++ +    I 
Sbjct: 197 LSEEIMLKAVMCAHDEYQVAIKNIAEFVAEVGNDKWDWEAPATNETLLGDIQSQFGAQIN 256

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRTVML 308
           E  +    I EK  R  ++ ++K   +   SS+ +  N  E V + F+ ++   VR  +L
Sbjct: 257 EAYQ----IKEKLDRYAKVGEIKTTAIEALSSDDADGNSAEEVGNYFKKVEKSTVRERIL 312

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R+DGRD+ETVR++  + G+L+ THGS+LF RG+TQA+VV TLG++ D Q ++ L  
Sbjct: 313 NNDPRIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKRDAQLIEKLES 372

Query: 369 TQR-ND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           ++R ND F++HYNF P   GE  R+G   RREIGHGRLARR I   LP   ++PYT+R+V
Sbjct: 373 SERKNDYFLLHYNFPPYCVGETGRVGTTKRREIGHGRLARRGISACLPTIEEYPYTIRVV 432

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCGSSL+LMDAGVP+  PVAGIAMGLVK+GD F +L+DI GDEDHL
Sbjct: 433 SEITESNGSSSMASVCGSSLSLMDAGVPMKAPVAGIAMGLVKEGDRFTVLTDILGDEDHL 492

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  G+ A+QMD+KI GI++ IM +AL+QAK  RL+IL +M+K++ E     
Sbjct: 493 GDMDFKVAGTSRGVNALQMDIKIQGITQEIMDIALKQAKEARLNILGQMNKIICEPN-SS 551

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            +  P+  ++ I  D+IR++IG GG+ I+GI+  +GA V++DDDG V + ++     + A
Sbjct: 552 SKNAPKTAVIKIDKDKIRDLIGKGGETIKGIISTSGASVDVDDDGNVNVFANDQKAFDIA 611

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            +M++ +T VPEV+K+Y G++VK+++FGAFV+    +DGL+HIS+++ ERV K  D +KE
Sbjct: 612 AQMVKDVTAVPEVDKVYTGKIVKIVEFGAFVNIMPNQDGLLHISEIAHERVEKVEDHLKE 671

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           GD + VK+L   DRG+IKLS KV+
Sbjct: 672 GDEIDVKVLGL-DRGRIKLSRKVL 694


>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 705

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP 
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPS 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +
Sbjct: 419 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I +IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEAITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   SD ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 706

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ AS AL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASTALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  LSEDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILSEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKGALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP 
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPS 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +
Sbjct: 419 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   SD ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
           DSM 2380]
 gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 699

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/691 (48%), Positives = 471/691 (68%), Gaps = 13/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE ++ G+ L LETG++ARQ+DGAV+ ++G T VL T V  + +++GQ FFPLTVNYQ
Sbjct: 4   QKVECQFNGQTLTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPG + RRE   TE E L+ R+IDR +RPLF K Y  ETQ++  V+  D ++
Sbjct: 64  EKFYAGGKIPGSFFRRERGATERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P  ++MV ASAA+ +S +PF+GPV   +V  + G  + NP +++   S +D+ VSG++D
Sbjct: 124 DPDTLAMVGASAAIAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMDIIVSGSRD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE-- 241
           A++MVE E   +SE  +LDA+ F H   +P+I+   +L K+  KE      ++FS  E  
Sbjct: 184 AIIMVEGETRFISEQEMLDALFFAHEAIQPLIDVQLELVKIAGKE-----KREFSVPEID 238

Query: 242 ----EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
               E+++++ +  L  +  I  K  R   + ++K +++   +++     E +I   F +
Sbjct: 239 PAVVEKVAELAETRLSEAVKIRTKQDRYAAVAEIKTEILETLAADFED-QEDDISEAFGN 297

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q ++VR ++   KVR+DGRD  T+R I+ ++GLL R HGS+LF RG+TQA+V   LGT 
Sbjct: 298 LQKRLVRQMVARDKVRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTS 357

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D++   +   FM+HYNF P   GE S    P RREIGHG LA R+I  VLP   
Sbjct: 358 KDEQRMDNVQSMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHD 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYTLR+VS+I ES+GSSSMA+VCG+SLALMDAGVP+S+ VAGIAMGL+K+GDD ++LS
Sbjct: 418 DFPYTLRVVSDILESNGSSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGDDIVVLS 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKV GT  GITA+QMD+KI G+S+ IM  AL+QA+ GRLHIL++M++
Sbjct: 478 DILGDEDHLGDMDFKVTGTREGITALQMDIKIKGVSKEIMQQALEQAREGRLHILDKMAE 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++  R  L  + PR+  + + PDQ+R VIG GGK +RGI+E TG  ++I+DDG + IAS
Sbjct: 538 AITAPRSDLSPYAPRITTIQVKPDQVRTVIGPGGKNVRGIIEATGCAIDIEDDGRINIAS 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     +AA +MIR++T    V K+Y   V K+M+FGAFV      +GLVHIS+L+ ERV
Sbjct: 598 ADGDACKAAIKMIRNLTQEAVVGKLYMATVKKIMEFGAFVEIFPGTEGLVHISELAKERV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K +D+++EGD V VK LD D +GKIKLS K
Sbjct: 658 KKVTDILQEGDQVLVKCLDIDRQGKIKLSRK 688


>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
 gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
          Length = 725

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/700 (48%), Positives = 480/700 (68%), Gaps = 2/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHTVRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++A+SAAL +SG+PF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 123 NPEIPADIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA+QLSEDV+L A+++GH + +  I AI  L +   K E     +    
Sbjct: 183 GTERAVLMVESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++    L+ +  + +K  R  ++ ++   + +  +      ++ E+ +V  D+
Sbjct: 243 ALIAKVSEIGLPLLQQAYQLRQKSARSTKLKEIYATVQAQLAEAGVEADKVEVGNVLFDL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +L  + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 303 EAKIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 363 DEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QA+ GR+HIL  M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQGA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  ERV 
Sbjct: 603 STDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVK 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              D +KEG  V VKL+  D++G+++LS+K      G  I
Sbjct: 663 DIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEGGSI 702


>gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           N1568]
          Length = 706

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 474/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D +K G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
 gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
          Length = 706

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
 gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
          Length = 697

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/699 (49%), Positives = 479/699 (68%), Gaps = 12/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  V+   G  V++A V   ++ K GQDFFPLT
Sbjct: 3   MFNIIRKEFQFGQHNVILETGRVARQANTVVITMGGVQVLVAVVAQPKA-KAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGYFNEIQVTATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+Y+LNP L++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYILNPNLEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-AKEPI----VIDS 234
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A    A E      V + 
Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS- 293
           +   KL+E     I E   ++     K  R   +D L  + V+ F  E+      E V+ 
Sbjct: 242 ELLGKLKEAFEAKISEAYTIAV----KQDRYAALDALYAEAVAQFVPENDETGIAEEVNE 297

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +FED++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  T
Sbjct: 298 LFEDLKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTT 357

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VL
Sbjct: 358 LGNTRDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVL 417

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F
Sbjct: 418 PAADRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERF 477

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM  AL QA  GR+HILN
Sbjct: 478 AVLSDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMESALNQAYAGRMHILN 537

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM++V+S +R ++    P  +++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV
Sbjct: 538 EMNQVISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTV 597

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++   + A  +AA   I+++T   E   IY G+V+++++FGAFV+     DGL+HISQ+S
Sbjct: 598 RVFGETKAAAQAAVAKIQALTAEIEPGTIYTGKVIRIVEFGAFVNILPGTDGLLHISQIS 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ER+A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 658 NERIANVADVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
 gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
          Length = 706

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQTRSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 706

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
 gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
          Length = 706

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/699 (48%), Positives = 475/699 (67%), Gaps = 10/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP 
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPS 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +
Sbjct: 419 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ERV   SD ++ G  V VK L+ DDRG+++LS+K + +
Sbjct: 658 HERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALTE 696


>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
 gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
          Length = 707

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 478/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELLAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Thiomonas sp. 3As]
          Length = 719

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/693 (48%), Positives = 481/693 (69%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      +W    + +ETG IARQ+ GAVL    +TVVLATVV  R+ K GQDFFPLT
Sbjct: 1   MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+ENE L SR+IDR IRPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + +++A+SAAL +SGLPF GPV  A+V Y+NG YVLNP R +     L+L V+
Sbjct: 121 NPEVEADIPALLASSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF 237
           GT+ AVLMVE EA+QLSE+V+L+A++FGH + +  I AI +L +   K         KD 
Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKD- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L + +  +  +D+R +  I +K  R + + +   K+ +  +    + +  ++  +  D
Sbjct: 240 QALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGIAADAAKVDGILFD 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +L  + R+DGRD+ TVR +S +  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 300 MEARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTD 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +D Q +D+L G  R+ F++HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP+  
Sbjct: 360 QDAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSE+TES+GSSSMA+VCG  LAL+DAGVP+   VAGIAMGL+K+G+ F +L+
Sbjct: 420 DFAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ SG+TA+QMD+KI GI+  IM +AL QA+  R+HIL  M +
Sbjct: 480 DILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQ 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +  +R ++ +F PR+  + I P++IR+VIG GG  IR + E+TG ++NI +DGT+ IAS
Sbjct: 540 AVGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   +   A++ I  +T   EV ++Y G VVK++DFGA V+    +DGL+HISQ++ ER+
Sbjct: 600 TDADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K SD ++EG  V VK+++ DD+G+ +LS+K +
Sbjct: 660 NKVSDFLQEGQKVRVKVIETDDKGRFRLSIKAL 692


>gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240355]
          Length = 706

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D +K G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 685

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/669 (48%), Positives = 461/669 (68%), Gaps = 4/669 (0%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +A+  +T V  TVV  + +K+GQDFFPLTV+YQERTYA G+IPGG+ +RE RP+E E LI
Sbjct: 1   MASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLI 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           +R+IDR +RPLF + + NE QVI  V+  + + SP +V+M+ ASAAL LSG+PF GP+  
Sbjct: 61  ARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGA 120

Query: 152 AQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
           A+V +IN Q+VLNP   E + S LDL V+GT  AVLMVE EA+ LSE+ +L A++FGH +
Sbjct: 121 ARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVLMVESEADILSEEQMLSAVVFGHQQ 180

Query: 211 CKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
            + VIE I +  K   K     +  +  + L  ++  + +  +  +  I EK  R +QID
Sbjct: 181 QQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVKALAEARIGDAYRITEKQARYEQID 240

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            +K  +++  +++  + +EG I+ +   +++ +VR  ++  + R+DGR  +TVR +    
Sbjct: 241 AIKADVIAQLTAQDETVSEGAIIDIITALESSIVRGRIIAGEPRIDGRTVDTVRALDICT 300

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
           G+L RTHGS++F RG+TQA+ V TLGT  D Q +D L+G + + F+ HYNF P + GE  
Sbjct: 301 GVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETG 360

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHGRLA+R +  V+P   +FPY +R+VSEITES+GSSSMA+VCG+SLALM
Sbjct: 361 RIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM 420

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           DAGVPI   VAGIAMGLVK+ + F++LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI
Sbjct: 421 DAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKI 480

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI+  IM +AL QAK  R+HIL+ M + +   R  + +F PR+  M I P +I++VIG 
Sbjct: 481 EGITPEIMQIALNQAKGARMHILSVMEQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGK 540

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           GG VIR + E+TG  ++IDDDGTVKIA++     +A    I  I    EVN IYKG+V +
Sbjct: 541 GGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKAVMARIEDIVAEVEVNAIYKGKVTR 600

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V+DFGAFV   G ++GLVHISQ++ ERV + +D +  G  V VK+++ D + +I+L+MK 
Sbjct: 601 VVDFGAFVSILGGKEGLVHISQITNERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMK- 659

Query: 690 VDQNTGKPI 698
            D N   P+
Sbjct: 660 -DLNNDTPV 667


>gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC
           2396]
 gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Hahella chejuensis KCTC 2396]
          Length = 703

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/689 (49%), Positives = 472/689 (68%), Gaps = 4/689 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            ++    + LETGRIARQ+ GAVL T  +TVVL T V ++    G+DFFPL+V+YQE+TY
Sbjct: 8   FQYGNSTVTLETGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSVHYQEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGGY +RE RP+E E L SR+IDR IRPLF   + NE Q+I  VM  + +  P +
Sbjct: 68  AAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPDGFMNEVQIICTVMSANKDVDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            S++ A+AAL +SG+PF+GP+  A+V Y +   Y+LNP     + S LD+ V+GT+DAVL
Sbjct: 128 ASIIGAAAALEISGVPFQGPLAAARVGYTDEDGYLLNPGFKAIENSKLDMVVAGTEDAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE EA +L+ED +L A++F H E +  ++AI + A+   K      + +  ++L E + 
Sbjct: 188 MVESEAKELTEDQMLGAVLFAHQEMQVAVQAIKEFAQEAGKPKWDWQAPEVNAELLEALK 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVR 304
                 +  +  I  K  R  ++ +L+++     + E     E E+V   F  ++   VR
Sbjct: 248 AKFAGSIGEAYGIRVKADRYAKLGELRQQAEEELAGEEEGKFEAELVKKYFSKLEKACVR 307

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             ++  + R+DGRD++TVRD+  +VG+L  THGS+LF RG+TQA+V  TLGT  D   VD
Sbjct: 308 QNIIKGEPRIDGRDTKTVRDLKIEVGVLPNTHGSALFTRGETQALVTATLGTMRDVLMVD 367

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L G +++ FM HYNF P + GE SR+G   RREIGHGRLARR +  ++P   +FPY +R
Sbjct: 368 ALEGEKKDSFMFHYNFPPYSVGEASRVGGVGRREIGHGRLARRGVQALMPNLEEFPYAVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
            VSEITES+GSSSMA+VCGSSLALMDAG+P+  PVAGIAMGLVK+GD F +L+DI GDED
Sbjct: 428 CVSEITESNGSSSMASVCGSSLALMDAGIPVKAPVAGIAMGLVKEGDSFAVLTDILGDED 487

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL+QA   RLHIL EM+KV+SE R 
Sbjct: 488 HLGDMDFKVAGTEKGVTALQMDIKINGITDEIMEIALEQALHARLHILGEMNKVISEPRD 547

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            + +  P++E + I PD+IR+VIG GG  IR I E TGA ++IDD+GTV+I + S    +
Sbjct: 548 SVADNAPKMETIKIDPDKIRDVIGKGGATIRSICEDTGASIDIDDNGTVRIYAESKLAAD 607

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A   I  IT   EV K+Y+G+V ++++FGAFV+    +DGLVHISQ++ ERV   +D +
Sbjct: 608 EAIYRITEITAEAEVGKLYRGKVERIVEFGAFVNILPGKDGLVHISQIAQERVENVTDYL 667

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           KEG  V VK+LD D RG+IKLSMK V ++
Sbjct: 668 KEGQEVVVKVLDIDARGRIKLSMKEVTED 696


>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
 gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
          Length = 707

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 478/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|332307057|ref|YP_004434908.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174386|gb|AEE23640.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 703

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/695 (47%), Positives = 467/695 (67%), Gaps = 4/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+  AV+A+  +T VL +VV  +  K GQDFFPLTVNYQE
Sbjct: 5   TKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           RTYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE Q+I+ V+  + E  
Sbjct: 65  RTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIP 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             ++S++  SAAL +SG+PF GPV  A+V Y +GQYVLN R  E + S LDL V+GT+ A
Sbjct: 125 TDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAGTKGA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK--MCAKEPIVIDSKDFSKLEE 242
           VLMVE EA  LSEDV+L A+++GH + + V+ A+++ A      K   V +  + S L++
Sbjct: 185 VLMVESEAEVLSEDVMLGAVMYGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVS-LKD 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++  + + ++  +  I +K  R   I  L  K V+         +  E+  +  ++++ V
Sbjct: 244 KIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADEEQDAKEVSELLHELESDV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ +L  + R+DGRD   +R +    G+L RTHGS+LF RG+TQAIV  TLGT  D Q 
Sbjct: 304 VRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQM 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L+G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY 
Sbjct: 364 IDGLNGKEDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPYV 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +S  
Sbjct: 484 EDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISGH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++ EF PR+  + I  D+IR+VIG GG +IR I E +   + I+DDGT+KI ++  A+
Sbjct: 544 RDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATERAK 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A   I  +T   E  K Y+G+V +++DFGAFV     ++GLVHISQ++ ERV K +D
Sbjct: 604 ADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVAD 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            + EG  + VK+++ D + +++LS+K + +    P
Sbjct: 664 HLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAP 698


>gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           CU385]
          Length = 706

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|226946303|ref|YP_002801376.1| polynucleotide phosphorylase/polyadenylase [Azotobacter vinelandii
           DJ]
 gi|259534109|sp|C1DFK5|PNP_AZOVD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226721230|gb|ACO80401.1| polyribonucleotide nucleotidyltransferase [Azotobacter vinelandii
           DJ]
          Length = 702

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/684 (49%), Positives = 472/684 (69%), Gaps = 13/684 (1%)

Query: 16  LKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T   E  VL TVV  +    G+ FFPL+V+YQE+TYA G+IP
Sbjct: 15  VTLETGRIARQASGAVLVTIDDEVAVLVTVVAAKQADPGKGFFPLSVHYQEKTYAAGRIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QVI  V+    ++ P + SM+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLSTSKKTDPDIASMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF GP+  A+V +     Y+LNP  ++ + S LD+ V+GT+ AVLMVE EA
Sbjct: 135 SAALAVSGIPFNGPIGAARVGFHEETGYLLNPSYEQLKASRLDMVVAGTESAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H E + VI+AI + A    +     +P V ++     +  E  + 
Sbjct: 195 EELTEDQMLGAVLFAHEEFQAVIQAIKEFAAETGRSAWDWQPPVENTALLEAIRAEFGEA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTV 306
           I +   ++     K  R  ++D+L+++ ++  + +        E+   F  I+ + VR  
Sbjct: 255 ISQAYTITV----KQERYGRLDELREQTIARLAGDAEGQPSVAEVKEAFGLIEYRTVRQN 310

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++D K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L
Sbjct: 311 IVDGKPRIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQVLDTL 370

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G +++ FM+HYNF P + GE  RMG+  RREIGHGRLARR +  +LP+   FPYT+R+V
Sbjct: 371 EGERKDSFMLHYNFPPFSVGECGRMGSAGRREIGHGRLARRGVQAMLPKDDSFPYTVRVV 430

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+DI GDEDHL
Sbjct: 431 SEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHL 490

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT +G+TA+QMD+KI GI+E IM +AL QA   RLHIL +M +V+ +SR +L
Sbjct: 491 GDMDFKVAGTAAGVTALQMDIKIQGITEEIMEIALNQALEARLHILGQMGQVIGQSRSEL 550

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
               P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAA
Sbjct: 551 SSNAPTMLSMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETREAAEAA 610

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R+ K +DV+KE
Sbjct: 611 KQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKE 670

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           G  V V +LD D+RG+IKLS+K V
Sbjct: 671 GQEVKVLVLDVDNRGRIKLSIKDV 694


>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           MC58]
 gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           MC58]
          Length = 707

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 239

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M13399]
          Length = 706

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLVANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|157825781|ref|YP_001493501.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
 gi|187611278|sp|A8GNL8|PNP_RICAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157799739|gb|ABV74993.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
          Length = 747

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/696 (46%), Positives = 477/696 (68%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L   V     K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCAAVVANKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V   V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  I+G++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLIDGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EAN LSE+ +L+A+ FG    +P+I+ I +LAK   K    +     + 
Sbjct: 181 GTADSVMMVESEANLLSEEQMLEAVKFGFESFQPIIKIIKELAKEAKKPKFQMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  ++++ +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIKQAFAIKSKQERSTNLDLIHEKVLTHFVSDIENKKYSNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM+ Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQLVDSLDGEYKERFMLDYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY +R+V+E TES+GSSSMATVC SSLALM AGVPI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYAIRVVAETTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM  AL+QA+ GRLHIL++M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKAALEQARLGRLHILDQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++S+   +LG+  P    + I  D+IR+VIG GGKVI+ I E + AK++I DDGTV + +
Sbjct: 541 IISKPNSKLGKNVPSTTTIKIDKDKIRDVIGPGGKVIKEICETSDAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS+++ ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGTKDGFVHISEIAEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVGSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240013]
 gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M04-240196]
          Length = 706

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
 gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
 gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 710

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 471/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GTQ AVL
Sbjct: 128 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTQGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K     +P  ++    S++ 
Sbjct: 188 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEALRSRIA 247

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            +    + +  R++    EK  R  Q+D +K +  +   +E  + + GEI  +   ++  
Sbjct: 248 AQAESRLSDAYRIT----EKQERYAQVDVIKSETTAALLAEDDTLDAGEISDLLHALEKD 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 364 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGEAFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
 gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
          Length = 704

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/691 (48%), Positives = 470/691 (68%), Gaps = 14/691 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++ G  + LETGRIARQ+ GAVL T   T VL TVV +++ ++G+DFFPL V+Y E
Sbjct: 5   TKTFQYGGHTVTLETGRIARQATGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + Y+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF+  + NE QVI  VM  D    
Sbjct: 65  KAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFADGFMNEVQVICTVMSADKHID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQD 183
           P + +M+  SAAL +SG PF GP+  A+V +   + Y+LNP  D+   S L++ V+GTQD
Sbjct: 125 PDIPAMIGTSAALAISGCPFNGPIGAARVGFNESEGYILNPTYDQLPNSKLEMVVAGTQD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239
           AVLMVE +A+QL+ED +L A++F H E + VI+A+ +LA    K      S D+      
Sbjct: 185 AVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKP-----SWDWQAPATD 239

Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L   ++  +K DL  +  I +K  R  ++ +++   V+  ++E     +  +   F+ 
Sbjct: 240 EALLSAVTDKVKGDLGEAYRITDKAERYARVGEIRDACVAELATEDGPSAD-LVKDYFKK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  +VR  ++  + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI  VTLG+ 
Sbjct: 299 VEKALVRNRIIAGEPRIDGRDTRTVRQIACEVDILSKAHGSALFTRGETQAIGAVTLGST 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +  VLP   
Sbjct: 359 RDAQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 419 EFPYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ 
Sbjct: 479 DILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNA 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           VL   R    E  P +  + +  D+IR++IG GG +IR I EQ+GA V+I+DDGTV++  
Sbjct: 539 VLDAPREVTSENAPSMVTLKVDADKIRDIIGKGGAMIRSITEQSGATVDIEDDGTVRVFG 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              A  + A  +I  IT   EV  IY G+V +++DFGAFV+    +DGL+HISQ++ ERV
Sbjct: 599 QDQASRDKAVALIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
              SD +KEG+ V VK+LD D RG+IKLS+K
Sbjct: 659 ENVSDHLKEGEEVRVKVLDVDQRGRIKLSIK 689


>gi|221134255|ref|ZP_03560560.1| polynucleotide phosphorylase/polyadenylase [Glaciecola sp.
           HTCC2999]
          Length = 702

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/686 (47%), Positives = 461/686 (67%), Gaps = 4/686 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+  AV+A+  +T VL TVV  +  K  QDFFPLTVNYQE
Sbjct: 5   TQNFQYGQHTVTLETGVVARQATAAVMASMDDTSVLVTVVGKKEAKADQDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE Q++I V+  + E  
Sbjct: 65  KAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPESFKNEVQIVITVVSANPEIP 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
             ++S++  SAAL +SG+PF GP+  A+V Y NG+Y+LN R  E  +  LDL V+GT+ A
Sbjct: 125 TDIISLIGTSAALAISGIPFNGPIGAARVGYTNGEYILNTRHSEQAESQLDLVVAGTESA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV--IDSKDFSKLEE 242
           VLMVE EA+ LSE+V+L A++FGH + + V+  + + A      P+       + ++L+ 
Sbjct: 185 VLMVESEADILSEEVMLGAVVFGHEQSQAVVNNVREFAAKV-NTPMWDWTPEAENTELKT 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           +++++ K  +  +  I +K  R   +  +     +   +E+   +  E+  +  D+++ V
Sbjct: 244 KVAELAKAGMTEAYQISDKLARKDAVVAVTSAASAAILAENPDQDPKEVSELLHDLESDV 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ +L  + R+DGRD   +R +    G+L RTHGSS+F RG+TQA+V  TLGT  D Q 
Sbjct: 304 VRSRILAGEPRIDGRDPAMIRALDVATGVLPRTHGSSVFTRGETQALVAATLGTERDAQM 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L GT  + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P    FPY 
Sbjct: 364 IDELGGTSTSRFMLHYNFPPYCVGETGFIGSPKRREIGHGRLAKRGIQAVMPSETDFPYV 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  ++F++LSDI GD
Sbjct: 424 VRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILGD 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +   
Sbjct: 484 EDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKEARLHILGVMDQAIGGH 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L EF PR+  + I  ++IR+VIG GG +IR I E +   + I+DDGT+KI ++  A+
Sbjct: 544 RDELSEFAPRIYTLKIDQEKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATEKAK 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
              A E I  +T   EV K+Y G+V ++ DFGAFV     +DGLVHISQ++ ERVAK +D
Sbjct: 604 ATIAIEKIEQVTAEIEVGKVYTGKVSRIADFGAFVEVLPGKDGLVHISQIAHERVAKVTD 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            + EG  V VK+++ D + +++LSMK
Sbjct: 664 YLSEGQEVQVKVMEIDRQNRVRLSMK 689


>gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           8013]
          Length = 706

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
           C91]
 gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
          Length = 705

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/690 (50%), Positives = 479/690 (69%), Gaps = 17/690 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I +    L +ETG IA+Q+ GAV+ +  +TVVL TVV D+  K GQDFFPLTV+YQE+ Y
Sbjct: 8   ITYGHHTLTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTKPGQDFFPLTVDYQEKFY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G+IPG + +RE RP+E EIL SR+IDR IRPLF   + NE QVI  V+  D E    +
Sbjct: 68  SAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSDAEIDADI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            + + ASAAL+LSG+PF+GP+  A+V YI+ +YVLNP   + ++  L+L V+GTQ AVLM
Sbjct: 128 PATIGASAALILSGIPFDGPIGAARVGYIDNEYVLNPTTTQLNKSQLNLVVAGTQKAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEE 242
           VE EAN+LSEDV+L A+ +GH++ + VI  I++LA          +P     KD S L E
Sbjct: 188 VESEANELSEDVMLGAVTYGHDQMQQVINMINELADETGVTAWDWQPA---EKDHS-LIE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---- 298
           +++Q+ + DLR +  + +K VR + I ++ +++   F+   +   EG      ++I    
Sbjct: 244 KITQLAEADLRDAFRLKQKSVRTEAISEIWQRV---FTELKAGTEEGPSEQTIKEIGFAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 301 EAKIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G     FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP   +
Sbjct: 361 DEQKIDALQGDYSERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALLAVLPPVEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y +R+VSE+TES+GSSSMA+VCG  LALMDAG P+   VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FGYAMRVVSEVTESNGSSSMASVCGGCLALMDAGAPLKAHVAGIAMGLIKEGNRFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGTEEGITALQMDIKIQGITKEIMQVALLQAKEGRLHILDIMKQS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  +R  +    PR+    I P++IR+VIG GG VIR + E+TG  ++I DDG+V IAS 
Sbjct: 541 LPIARDSVSVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIASI 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S    E A+  I +IT   EV KIY+G V+K++DFGA V     +DGL+HISQ++ ERV 
Sbjct: 601 SNEGGEQAKRRIENITADVEVGKIYEGTVLKLLDFGAIVSILPGKDGLLHISQIANERVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             +D +KEG  + VK+L+ DD+G+++LSMK
Sbjct: 661 SVADHLKEGQIIRVKVLEADDKGRLRLSMK 690


>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
 gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
          Length = 706

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/697 (49%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQM---IKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE ++++     E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGVAGETIKEAFKIRQKQERSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D +K G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
 gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 707

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 2   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   ++ E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVRGIVGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           SDF]
 gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii]
          Length = 697

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/695 (49%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV   + K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLTSRLIDRPIRPLFPEGYYNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        E+  +FED
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
              +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 TNVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 696


>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
           eiseniae EF01-2]
 gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
          Length = 757

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/694 (48%), Positives = 482/694 (69%), Gaps = 6/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL +  +TVVLATVV  RS+K GQDFFPLT
Sbjct: 3   IFNKVTKTFQWGDQTVVMETGEIARQASGAVLVSIDDTVVLATVVASRSIKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR +RPLF + + NE  ++I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPLRPLFPQGFFNEVHLVIHTLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A+SAAL LSG+PF GP+  A+V YI G+Y LNP     + S LDL V+
Sbjct: 123 NPEVDADIAALIASSAALALSGIPFNGPIGAARVGYIQGEYRLNPGPTARKSSQLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV---IDSKD 236
           GT+ AVLMVE EA QLSE+++L A++FGH + K  I+AI +L     K P+      ++D
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGKVAIDAIHELVHAAGK-PVWQWEAPARD 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L   ++ +  + LR +  I  K  R +        +++   ++    +  +   +  
Sbjct: 242 -EALIARVAALADDKLRAAYQIRNKQARTEACRAAYAAVLAQLQADGVECDTVKAEGLLF 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI+A +VR+ +L  + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA+ V TLGT
Sbjct: 301 DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L+G   + FM+HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP  
Sbjct: 361 ERDAQRIDALAGEYDDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+KDG+ F +L
Sbjct: 421 EEFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL QAK  R+HIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQ 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + +++ ++  F P++  M I  ++IR+VIG GG VIR + E+TG ++NI++DGT+ IA
Sbjct: 541 QAIGQAKTEVSNFAPKLYTMKINAEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++  A+ + A+  I  IT   E+ KIY+G V K++DFGA ++    +DGL+HISQ++ ER
Sbjct: 601 ATDAAKADIAKRRIEQITAEIEIGKIYEGPVTKLLDFGALINLLPGKDGLLHISQIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V + SD + EG  V VK+++ D+RG++KLSMKV+
Sbjct: 661 VERVSDYLSEGQIVRVKVMEADERGRVKLSMKVL 694


>gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 706

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 476/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   ++ E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIVGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|126664893|ref|ZP_01735877.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
 gi|126631219|gb|EBA01833.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
          Length = 706

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/696 (49%), Positives = 469/696 (67%), Gaps = 12/696 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   E  G+ + LETGRIARQ+ GAVL T  +  VL TVV  +  K GQ FFPLTVNY E
Sbjct: 7   TKTFELGGKTVTLETGRIARQATGAVLVTIDDISVLGTVVGAKEAKPGQGFFPLTVNYTE 66

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TY+VGKIPGG+ +RE+RPTE E L SR+IDR IRPLF   + NE QV++ VM  +    
Sbjct: 67  KTYSVGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVLTVMSANKTQD 126

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGTQD 183
           P + +M+AASAAL +SG+PFEGP+  ++V + N + Y LNP  +E   SL D+ V+GT+D
Sbjct: 127 PDIAAMLAASAALAISGIPFEGPIGASRVGFTNERGYFLNPTHEERSTSLLDMIVAGTED 186

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238
           AVLMVE +A  L+ED +L A++F H E +  +  I + A    K     +   ++++   
Sbjct: 187 AVLMVESQAQSLTEDQMLGAVLFAHQEMQTAVSGIKEFAAEIGKPRWEWQAEAVNAELMG 246

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFED 297
            ++ + +  I E    +  I +K  R  ++ ++K   V+  + +    +  E V   F  
Sbjct: 247 AIKADFADAIAE----AYSIRDKMDRYARLGEIKAAAVAKLAGDEEGKHSAEDVKKCFGK 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            +  VVR  ++D K R+DGRD++TVR I  +VG+L   HGS+LF RG+TQAIV  TLGT 
Sbjct: 303 TEKHVVRQQVIDGKPRIDGRDTKTVRPIKIEVGILPGAHGSALFTRGETQAIVTTTLGTS 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G  ++ F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P   
Sbjct: 363 RDMQIIDALEGESKDPFLFHYNFPPYSVGEAGRMMGPGRREIGHGRLAKRGLLAVMPTVE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+GD F IL+
Sbjct: 423 EFPYTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKSAVAGIAMGLVKEGDKFAILT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QA   R HIL EM+K
Sbjct: 483 DILGDEDHLGDMDFKVAGTKEGITALQMDIKINGITDEIMELALEQAYGARQHILGEMNK 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++ SR +L    P +  + I P++IR+VIG GG  IR I E+TGA +++DDDG VKI +
Sbjct: 543 VIAASRTELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICEETGASIDLDDDGNVKIYA 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            ++   +AA + +  IT   EV  IY+G+V +++DFGAFV+    +DGLVHISQ+S  R+
Sbjct: 603 DNMEAAQAAVKRVMEITAEIEVGAIYQGRVERIVDFGAFVNILPGKDGLVHISQISDRRI 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              +D +KEG  V VK+LD D+RG++KLSMK V + 
Sbjct: 663 ENVTDELKEGQEVLVKVLDVDNRGRVKLSMKEVKEG 698


>gi|53804618|ref|YP_113771.1| polynucleotide phosphorylase/polyadenylase [Methylococcus
           capsulatus str. Bath]
 gi|81682222|sp|Q609C6|PNP_METCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53758379|gb|AAU92670.1| polyribonucleotide nucleotidyltransferase [Methylococcus capsulatus
           str. Bath]
          Length = 691

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/686 (49%), Positives = 464/686 (67%), Gaps = 3/686 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    +  ETG IARQ+D AV+     TVVL TVV  +      DFFPLTVNYQE+ 
Sbjct: 7   QFQYGAHTVSFETGEIARQADAAVMVDMAGTVVLVTVVGRKDASPHGDFFPLTVNYQEKA 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ +RE RP+E E L +R+IDR IRPLF   + +E QV+  VM  + E  P 
Sbjct: 67  YAAGRIPGGFFKREGRPSEKETLTARLIDRPIRPLFPDGFTHEVQVVATVMSLNPEVDPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + SM+ ASAAL LSGLPF+GP+  A+V ++NG YVLNP     +GS LDL V+GT +AVL
Sbjct: 127 IPSMLGASAALTLSGLPFKGPIGAARVGFVNGAYVLNPDGSVVEGSELDLVVAGTANAVL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMS 245
           MVE EA  L E+V+L A++FGH + +  I AI++LA+     P   + S   + L   + 
Sbjct: 187 MVESEAKILPEEVMLGAVVFGHEQMQTAIRAINELAEEVGVTPWPWEPSAVDAALVAAVD 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L     I +K +R +++ +++K ++   ++E  + +E  +    E ++ ++VR+
Sbjct: 247 ELARAGLGEGYNIADKQLRQQKLKEVRKAVIDALTAE-GAHDENAVKRQIEKLEEEIVRS 305

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L    R+DGRD  TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT  D Q +D+
Sbjct: 306 NILHHGKRIDGRDLSTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDAQLIDA 365

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G  + +FM+HYNF P   GE   +G+P RREIGHGRLA+R +  ++P   +FPY +RI
Sbjct: 366 LEGEYKENFMLHYNFPPYCVGETGAIGSPKRREIGHGRLAKRGVQAIMPTMDEFPYVIRI 425

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCGSSLALMDAGVP    VAGIAMGL+ +G++F +LSDI GDEDH
Sbjct: 426 VSEITESNGSSSMASVCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAVLSDIMGDEDH 485

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI GI+  IM  AL QA+ GR+HIL++M++ L   R +
Sbjct: 486 LGDMDFKVAGTRDGVTALQMDIKIDGITPEIMRQALHQAREGRMHILDKMAQALPAPRSE 545

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+    I P +IR VIG GG  IR I E+TG  ++I DDG VKIAS        
Sbjct: 546 MSDYAPRITSFTIDPSKIREVIGKGGATIRAITEETGTSIDISDDGVVKIASVDKQAGLE 605

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AR  I  IT   EV K+Y+G+V ++MDFGAFV     +DGLVHISQ+S E V K SD + 
Sbjct: 606 ARRRIEDITAEVEVGKVYEGKVARLMDFGAFVTILPGKDGLVHISQISDEHVEKVSDKLA 665

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVD 691
           EGD V VK+L+ D +G+++LSMK V+
Sbjct: 666 EGDMVKVKVLEIDRQGRVRLSMKAVE 691


>gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
           DSM 2075]
 gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
           DSM 2075]
          Length = 749

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/687 (49%), Positives = 469/687 (68%), Gaps = 9/687 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR   +ETG+IA+Q+ GAV   YGETVVL TVV D ++++G DF PLTV+YQE +YA G
Sbjct: 10  GGREFVIETGKIAKQASGAVWVQYGETVVLVTVVGDTNVREGIDFLPLTVDYQEMSYAAG 69

Query: 72  KIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           +IPG + RRE  RP+E E L SR+IDR +RP  +K +  ETQ+I  VM  D  + P V++
Sbjct: 70  RIPGNFFRREIGRPSEKETLTSRLIDRPVRPRMNKGWTFETQIIATVMSVDRVNEPDVMA 129

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  ASAALM+S +PF+GP+ G +V  ++GQ VLNP  ++ ++  L+L V+G++DAV MVE
Sbjct: 130 MTGASAALMVSDVPFDGPIAGVRVGRVDGQLVLNPTAEQIEKSDLELLVAGSRDAVCMVE 189

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEM 244
             +  L ED +L+AI FGH   +P+++   +LA    K      P   D  + + L  + 
Sbjct: 190 GGSLMLGEDEILEAIWFGHAGLQPLLDIQEELAAAVGKPDREFTPPASDDHELTALVAQA 249

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +Q  +  L        K  R  +   LKK +++    E ++  EG++    E + A+ +R
Sbjct: 250 AQSAEPSLAEVLSTKPKLERYAKKRLLKKAVLAAMG-EAAAGREGQVKEAVEHLIAEGMR 308

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           T +L++  R+DGR    VR I  +VG+L RTHGS+LF RG+TQA+VV TLGT  DEQ ++
Sbjct: 309 TAILEEGRRIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQALVVATLGTAGDEQRIE 368

Query: 365 SLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           S++ G     F++HYNF P + GE  R+G P+RRE+GHG LARRA+  +LP    FPY L
Sbjct: 369 SVTEGDVFRHFLLHYNFPPYSVGEAKRLGGPNRRELGHGALARRAVEKILPAKEDFPYCL 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R VSEITES+GSSSMA+VCGSS+ALMDAGVP+S+ VAG+AMGL+K+GD  ++L+DI GDE
Sbjct: 429 RCVSEITESNGSSSMASVCGSSMALMDAGVPVSEAVAGVAMGLIKEGDKMVVLTDIMGDE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAG+  GI+A+QMD+KI GIS+ IM  AL+QA+ GRLHIL EM K +   R
Sbjct: 489 DHLGDMDFKVAGSARGISAVQMDIKISGISKEIMGQALKQAREGRLHILGEMQKAIDNPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++    PR+  + +P ++I+++IG GGKVIRGI  +T A+++IDDDGTV++A+   A  
Sbjct: 549 QEISILAPRITTIHVPVERIKDIIGPGGKVIRGIQMETEARIDIDDDGTVRVAAVDGAAS 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A EMI+ +    E N +Y+G+VV++MDFGAFV     RDGL+HIS+L   RV   +DV
Sbjct: 609 LRAVEMIKELIQEVEENAVYEGKVVRIMDFGAFVEILPGRDGLIHISELDHTRVRAVTDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +KEGD V VK+L  DDRGKI+LS K +
Sbjct: 669 IKEGDVVQVKVLGIDDRGKIRLSRKAL 695


>gi|109897953|ref|YP_661208.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
           atlantica T6c]
 gi|123064734|sp|Q15VD4|PNP_PSEA6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109700234|gb|ABG40154.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 703

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/702 (48%), Positives = 464/702 (66%), Gaps = 18/702 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+  AV+A+  +T VL +VV  +  K GQDFFPLTVNYQE
Sbjct: 5   TKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           RTYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE Q+I+ V+  + E  
Sbjct: 65  RTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIP 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             ++S++  SAAL +SG+PF GPV  A+V Y +GQYVLN R  E + S LDL V+GT+ A
Sbjct: 125 TDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLDLVVAGTKGA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-------AKEPIVIDSKDF 237
           VLMVE EA  LSEDV+L A++FGH + + V+ A+++ A            EP  +  KD 
Sbjct: 185 VLMVESEAEVLSEDVMLGAVMFGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVTLKDK 244

Query: 238 SKL--EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            K   E EM++  +        I +K  R   I  L  K V+      +  +  E+  + 
Sbjct: 245 IKALAEAEMTEAYQ--------ISDKMARKDAIVALTDKTVAAIVEADAEQDAKEVSELL 296

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            ++++ VVR+ +L  + R+DGRD   +R +    G+L RTHGS+LF RG+TQAIV  TLG
Sbjct: 297 HELESDVVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLG 356

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L+G   + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P 
Sbjct: 357 TERDAQMIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPS 416

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++
Sbjct: 417 EKEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVV 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +S  R ++ EF PR+  + I  D+IR+VIG GG +IR I E +   + I+DDGT+KI
Sbjct: 537 DQAISGHRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKI 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            ++  A+ + A   I  +T   E  K Y+G+V +++DFGAFV     ++GLVHISQ++ E
Sbjct: 597 FATERAKADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHE 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K +D + EG  + VK+++ D + +++LS+K + +    P
Sbjct: 657 RVNKVADHLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAP 698


>gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis alpha710]
 gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M6190]
 gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ES14902]
          Length = 706

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
           23330]
          Length = 708

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/701 (49%), Positives = 479/701 (68%), Gaps = 18/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHIKSFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYFERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+N  YVLNP   +  +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236
           GT+ AVLMVE EA+ L EDV+L A++FGH + + VI AI++LA+     P V D K    
Sbjct: 181 GTEQAVLMVESEADILPEDVMLGAVVFGHEQMQTVITAINELAQEV--NPEVWDWKAPEA 238

Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEI 291
                +K++E    +I E  ++     +K  R  ++D+    + +   +E + +  + EI
Sbjct: 239 NTDLIAKVKEISGDLIAEAFKIR----QKQARSAKLDEAWAAVEAVLITEETDTLAKNEI 294

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +F++++A VVR  +L  + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V
Sbjct: 295 KGIFKNLEAAVVRGQILAGQPRIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAV 354

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  
Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVA 414

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP+   F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + +
Sbjct: 415 VLPKPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDN 474

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHI
Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   ++  + +L +  PR+  M I PD+IR VIG GG+ IR I  +TG ++NI DDG
Sbjct: 535 LAQMQTAVAGPQ-ELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETGTEINIADDG 593

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649
            V IA+++    EAA+  I  IT   EV K+Y+GQVVK++D   GA V     +DGLVHI
Sbjct: 594 VVTIAATTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHI 653

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SQ++ ERV   SD ++ G TV VK L+ DDRG+++LSMK +
Sbjct: 654 SQITHERVKNVSDYLQVGQTVSVKALEVDDRGRVRLSMKAL 694


>gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
 gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
          Length = 685

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/671 (49%), Positives = 470/671 (70%), Gaps = 8/671 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           IARQ+  AV+    +T V  T V  + +K+GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP E E L++R+IDR +RPLF + + NE Q+I  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT  AVLMVE EA  LSE+ +L
Sbjct: 122 VPFNGPIGAARVGYINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH++ + VI+ I+ L K   KE      +  ++ L++ ++ + +  +  +  I E
Sbjct: 182 GAVVFGHDQQQVVIQNINDLVKEAGKEKWDWQPEPVNQALKDRIAALAESRMGDAYRITE 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q++ +K+++ +   +E  + +  E+  +   ++ +VVR+ ++  + R+DGR+ +
Sbjct: 242 KQERYAQVNLIKEEVTAALLAEDENVDLSEVSDILAHLEKQVVRSRVIRGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G   + F+ HYNF
Sbjct: 302 MVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P  A FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSHADFPYTIRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+G+DF++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLSDILGDEDHLGDMDFKVAGSREGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++  R ++ EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINGPREEISEFAPRIYTIRISP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP--- 617
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   +   A+E IR I D+    
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLK---AKEAIRRIEDITAEV 598

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ 
Sbjct: 599 EVGRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEI 658

Query: 678 DDRGKIKLSMK 688
           D +G+I+LSMK
Sbjct: 659 DRQGRIRLSMK 669


>gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 711

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/702 (47%), Positives = 473/702 (67%), Gaps = 15/702 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T E+E  GR L  E  ++A Q+ GAV A YG+T VL T V    L++G DF PLTV+Y E
Sbjct: 15  TFEVEVGGRILAFEIDKMAAQASGAVFARYGDTGVLVTAVASDRLREGIDFLPLTVDYLE 74

Query: 66  RTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            +YA G+IPGG+ RRE  RP+E E L SR+IDR IRPLF K + +E Q+I  V+  D+E+
Sbjct: 75  MSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKGFFHELQIIATVLSVDMEN 134

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++  ASAAL +S +PF+GP+   ++  + G+ ++NP + +  + +L+L V+G+ D
Sbjct: 135 DPDIIALNGASAALAISDIPFQGPIAAVRMGKVGGELMVNPTISQLKESTLNLIVAGSND 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFS 238
           A++MVE  A   SE+ +L+A+   H E +P++    ++     K       I+ID    +
Sbjct: 195 ALVMVEGGAELASEEEILEALFTAHAEMQPILRLQEQMRVEAGKTKRPVSEIIIDETLKT 254

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++EE    +I + +  +    EK VR + ++D  + +++   SE+    E EI   + D+
Sbjct: 255 RVEELSRALILQAIAQA----EKKVRHQAMEDGLQTVLTTLESEYEG-REKEITGFYHDL 309

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++L++K R+DGR    +R IS +VGLL RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 310 EKTLVRDLVLNQKRRIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVS 369

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +++L+G     FM+HYNF P + GE   +  PSRREIGHG LA RA+  VLPQ  +
Sbjct: 370 DEQRIETLTGDTFKAFMLHYNFPPYSVGETRMLRGPSRREIGHGALAERALSRVLPQPEE 429

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI  S+GSSSMATVCG SLA+MDAG+PI  PVAG+AMGL+K+ ++  ILSD
Sbjct: 430 FPYTIRVVSEILSSNGSSSMATVCGGSLAMMDAGIPIKAPVAGVAMGLIKEENNIAILSD 489

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KIGGI+  IM  AL QA+  RLHIL+ M++ 
Sbjct: 490 ILGDEDHLGDMDFKVAGTAAGITALQMDIKIGGINREIMSQALHQAREARLHILSRMNEA 549

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R QL E  P++ +M I PD+IR VIG GGK ++ IV  TGAK++I+DDG + IAS 
Sbjct: 550 IDQPRTQLKENAPKIVVMTINPDKIREVIGPGGKTVKNIVAVTGAKIDIEDDGRIHIASP 609

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI+ +T  PE+ ++Y+G+V K++DFGAFV      DGLVHIS+L  +RV 
Sbjct: 610 DALAANQAIRMIQELTQEPEIGQLYRGKVKKIVDFGAFVEILPGTDGLVHISELDKQRVK 669

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV---VDQNTGKP 697
           K +D++KEGD V VK+LD D +GKI+LS K    +DQ++  P
Sbjct: 670 KVTDILKEGDEVLVKVLDVDRQGKIRLSRKAALDLDQDSVNP 711


>gi|56460072|ref|YP_155353.1| polynucleotide phosphorylase/polyadenylase [Idiomarina loihiensis
           L2TR]
 gi|81363045|sp|Q5QYE1|PNP_IDILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56179082|gb|AAV81804.1| Polynucleotide phosphorylase [Idiomarina loihiensis L2TR]
          Length = 716

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/688 (50%), Positives = 470/688 (68%), Gaps = 10/688 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T + ++    + LETG IARQ+  +VLA+  +T VL TVV  +  ++GQ+FFPLTVNYQE
Sbjct: 5   TKQFQYGQHTVTLETGVIARQATASVLASIDDTTVLVTVVAKKEAREGQNFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA GKIPGG+ +RE RP+ENE L  R+IDR IRPLF   + NE QV+  V+  + + +
Sbjct: 65  KTYAAGKIPGGFFKREGRPSENETLTCRLIDRPIRPLFPDGFMNEVQVVATVVSVNPQIN 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P +V+++  SAAL +SG+PF GP+  A+V  +N +YVLNP  DE + S LDL V+GT  A
Sbjct: 125 PDIVALIGTSAALSISGVPFAGPIGAARVGVVNDEYVLNPTADELENSKLDLVVAGTDKA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFS---K 239
           VLMVE EA  LSED +L A+++GH   + VI+AI++      KE       +KD S   K
Sbjct: 185 VLMVESEAQLLSEDQMLGAVMYGHEAMQDVIKAITEFTAEAGKEKWDWQAPAKDESLQTK 244

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + E   Q I E  R +    +K  R  ++D +K++MV   ++E  + +  E   +F D++
Sbjct: 245 IRELAEQGIGEAYRTT----DKAERKGKLDQVKEQMVEKLTAEDENVDLEESGKIFHDLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + +VR+ ++  + R+DGRD + VR IS   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 SDIVRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G   N FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +F
Sbjct: 361 AQMIDELTGMNTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGIQAVMPSHDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+GD  ++LSDI
Sbjct: 421 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG   GITA+QMD+KI GI+ +IM  AL QAK  RLHIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGNTDGITALQMDIKIDGITRDIMESALAQAKSARLHILKVMDEAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R +L  + PR   + I  D+I++VIG GG VIR + E T   + I DDGT+K+A+S 
Sbjct: 541 GGHREELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKVAASD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A+ +AA E I+ +T   EV KIY+G+V +++DFGAFV     +DGLVHISQ++ ERV  
Sbjct: 601 QADADAAIEKIKQLTANVEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVND 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            ++ +K GD V VK+L+ D +G+++LSM
Sbjct: 661 VNEYLKVGDVVPVKVLEIDRQGRVRLSM 688


>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           FAM18]
 gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis FAM18]
          Length = 711

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 6   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 65

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 66  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 125

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 126 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 185

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P + D K    
Sbjct: 186 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPELWDWKAPET 243

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 244 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 304 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 364 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 424 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 484 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 544 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITI 602

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 603 AATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 663 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 699


>gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 706

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
 gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 707

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 2   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 695

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/686 (48%), Positives = 474/686 (69%), Gaps = 23/686 (3%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           LETGRIARQ+ GAVLA+  +T VL TVV  +  + GQDFFPL+V+Y E+TY+ GKIPG +
Sbjct: 17  LETGRIARQAHGAVLASMDDTQVLVTVVSSKETRPGQDFFPLSVDYIEKTYSTGKIPGSF 76

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           L+RE+RP+E E L SR+IDR+IRPLF   + NE QV+I V+  + E +P ++SM+  SAA
Sbjct: 77  LKREARPSEKETLTSRLIDRTIRPLFPNGFMNEIQVLITVVSANSEVNPDIISMLGVSAA 136

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLS 196
           L +SG+PF  P+ G++V Y NG+Y+LNP   E   S LD+ V+GT +AVLMVE EAN+LS
Sbjct: 137 LSISGVPFSRPIGGSRVGYSNGEYILNPTYIELTNSDLDMVVAGTDEAVLMVESEANELS 196

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PI---VIDSKDFSKLEEEMSQM 247
           E+++L A+++ H + +  I  I++       +      PI   V+ S   SK  +E+++ 
Sbjct: 197 EEIMLGAVVYAHEQYQVAITNIAEFTTEVGMQKWDWIAPITNEVLLSDIKSKFGKEINKA 256

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRTV 306
            +        I EK  R  +ID+++   +    +E+ + N  E VS  F++++   VR  
Sbjct: 257 YQ--------IKEKLDRHAKIDNIRMAAIEALENENENGNSAEEVSKYFKEVEKSTVRER 308

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L+   R+DGR++ETVR++  + G+L+ THGS+LF RG+TQA+VV TLG + D Q ++ L
Sbjct: 309 ILNNDSRIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKSDAQLIEKL 368

Query: 367 SGTQR--NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
              +R  N F++HYNF P   GE  R+    RREIGHG LARR I   LP   +FPYT+R
Sbjct: 369 ESPERQNNYFLLHYNFPPYCVGETGRLATIKRREIGHGHLARRGITACLPSIEEFPYTVR 428

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMA+VCGSSL+LMDAGVPI  P+AGIAMGLVK+ D F +L+DI GDED
Sbjct: 429 VVSEITESNGSSSMASVCGSSLSLMDAGVPIKAPIAGIAMGLVKENDRFTVLTDILGDED 488

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  G+ A+QMD+KI  I+  IM +AL+QAK  RL+IL +M++V+ E   
Sbjct: 489 HLGDMDFKVAGTSRGVNALQMDIKIQSITHEIMEIALKQAKEARLNILGQMNQVICEPNT 548

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
              + TP+  I+ I  D+IR++IG GG+ I+GI+  + A +++DD G V I S++    +
Sbjct: 549 S-NKNTPKTTIIKIKTDKIRDLIGRGGETIKGIISTSCASIDVDDSGNVNIFSNNQKSFD 607

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A +M++ +T +PEVNK+Y G+VVK+++FGAF++    +DGL+HIS++S ERV K  D +
Sbjct: 608 TAVQMVKDVTAIPEVNKVYTGKVVKIVEFGAFINIMPNQDGLLHISEISHERVEKVKDHI 667

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +EGD + VK++   DRG+IKLS KV+
Sbjct: 668 REGDKIDVKVIGL-DRGRIKLSRKVL 692


>gi|258591357|emb|CBE67656.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [NC10 bacterium 'Dutch
           sediment']
          Length = 695

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/683 (49%), Positives = 469/683 (68%), Gaps = 5/683 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+PL +E GR+ARQ+DGAVL  YG+TVVL TVV  + ++ G DFFPLTV+YQER YA GK
Sbjct: 11  GKPLSIEAGRVARQADGAVLVRYGDTVVLVTVVASKQMRQGIDFFPLTVDYQERAYAAGK 70

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+ +RE +P + E L SR+IDR +RPLF   Y+N+ Q+I  V+  D ++ P V++++
Sbjct: 71  IPGGFFKREGKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQQNDPDVLAVL 130

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
            ASAAL ++ +PF GP+   +V  + G+ +LNP   + +GS +D+ V+GT+ AV+M+E  
Sbjct: 131 GASAALTIAPIPFLGPIGAVRVGRVEGKLLLNPTYAQMEGSDIDMVVAGTRSAVVMLEAG 190

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKLEEEMSQMIK 249
           AN++ EDV+ +AI FGH   +P+I+ +S+LA+     K P  +   D  +L + +S + +
Sbjct: 191 ANEIPEDVMFEAIEFGHKGIQPMIDMVSELAQALRVEKVPFQVSPPD-PQLRDRVSALAR 249

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           + LR    I EK         L  ++++ FS E     +G +  +FE I+   +R ++L+
Sbjct: 250 QGLRALAGIAEKEEHRSHRQQLFDEVMAAFSDEPDD-RKGVVRGLFEAIEHDELRRMILE 308

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +  R DGR  E VR I+A+VG+L RTHGS+LF RG TQA+V  TLGT EDEQ +D L G 
Sbjct: 309 EGRRADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQRLDDLEGE 368

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
               FM+HYNF P + GEV  M  P RREIGHG LA RA+   LP   +F YTLRIVS+I
Sbjct: 369 GTKRFMLHYNFPPFSVGEVRFMRGPGRREIGHGALAERALLAALPPKEEFSYTLRIVSDI 428

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVCG+SL+LMDAGVPI   VAG+AMGLV + +   IL+DI G EDHLG M
Sbjct: 429 LESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAAILTDIIGLEDHLGDM 488

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  GITA+Q+D+K  GI+ ++M  AL QA+R RLHIL++M + L+E R  +  +
Sbjct: 489 DFKVAGTRKGITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMDRALTEPRSNISVY 548

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            PR+  + IP D+IR+VIG GGKVIRGIV  +GAK+++ DDG ++IAS      + A  +
Sbjct: 549 APRIITIMIPVDKIRDVIGPGGKVIRGIVADSGAKIDVSDDGRIEIASVDGEAAQKALSI 608

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  I +VPEV KIY+G+VVK+MDFGAFV      DGL+HISQ+S +RV +  DV+ EG+ 
Sbjct: 609 ISKIVEVPEVGKIYQGKVVKIMDFGAFVQILPGTDGLLHISQISEQRVKRVEDVLSEGEE 668

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQ 692
           + VK++D D  GKI+LS K V Q
Sbjct: 669 IMVKVIDVDKNGKIRLSRKEVSQ 691


>gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           35/02]
 gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI18]
 gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA19]
 gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI2]
 gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 706

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA 1090]
 gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID24-1]
 gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
 gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           gonorrhoeae FA 1090]
 gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
          Length = 707

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/697 (48%), Positives = 475/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 2   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 239

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 240 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 300 KRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 360 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 420 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 540 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 599 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 659 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 695


>gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 695

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/684 (48%), Positives = 466/684 (68%), Gaps = 15/684 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETGRIARQ+ GAVL +  +T VL TVV  + +  GQDFFPL+V+Y E+TYA GKIPG
Sbjct: 15  ITLETGRIARQAHGAVLVSMDDTQVLVTVVGSKKMHPGQDFFPLSVDYIEKTYAAGKIPG 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RE+RP+E E L SR+IDR IRPLF   + NE QV+I V+  + E  P ++SM+  S
Sbjct: 75  GFLKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVLITVISANSEVDPDIISMLGVS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL +SG+PF GP+  A+V Y NG+Y LNP   E   S LD+ V+GT  A+LMVE EA++
Sbjct: 135 AALSISGIPFNGPIGSARVGYSNGKYTLNPTYTELVDSDLDMVVAGTDKAILMVESEASE 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEEEMSQMIK 249
           LSE ++LDAII+ H + +  I  I++            E    +    S ++ +  + I 
Sbjct: 195 LSEKIILDAIIYAHEQYQVAITNIAEFVTQVGVQKWDWEAPATNEVLLSNIKSQFGKQIN 254

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTVML 308
           E  +    I EK  R  ++ ++K   +    +E  + N   E+   F  ++   VR  +L
Sbjct: 255 EAYK----IKEKLNRHVKVGEIKTAAIEALVNEDKNGNSIDEVSKYFNKVEKSTVRERIL 310

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R+DGRD+ETVR++  + G+L+ THGS+LF RG+TQA+VV TLG++ + Q ++ L  
Sbjct: 311 NNDPRIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREAQLIEKLES 370

Query: 369 TQRND--FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           ++R +  F++HYNF P   GE+ R+G   RREIGHGRL RR I   LP   +FPYT+R+V
Sbjct: 371 SERQNDYFLLHYNFPPYCVGEIGRVGTTKRREIGHGRLVRRGIAACLPSIEEFPYTVRVV 430

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA++CG+SL+LMDAGVPI  PVAGIAMGLVK+GD F IL+DI GDEDHL
Sbjct: 431 SEITESNGSSSMASICGASLSLMDAGVPIKAPVAGIAMGLVKEGDRFTILTDILGDEDHL 490

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  GI A+QMD+KI GI+  IM +AL+QAK  RL+IL +M++V+ E     
Sbjct: 491 GDMDFKVAGTSRGINALQMDIKIQGITREIMEIALKQAKEARLNILGQMNQVICEPNTS- 549

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            + TP+  ++ I  D+IR++IG GG+ I+GI+  + A V++DD+G V I S+     + A
Sbjct: 550 NKNTPKTAVIKIQTDKIRDLIGKGGETIKGIISTSSASVDVDDNGNVNIFSNDQKSFDTA 609

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            +M++ +T  P++ K+Y G+VVK++DFGAF++    +DGL+HIS+++ ERV K  + +KE
Sbjct: 610 MQMVKDVTTTPKIGKVYTGKVVKIVDFGAFINIKPNQDGLLHISEIAHERVDKVENHLKE 669

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           GD + VK+L   DRG+IKLS KV+
Sbjct: 670 GDEIDVKVLSL-DRGRIKLSRKVL 692


>gi|238897558|ref|YP_002923237.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259534133|sp|C4K3E6|PNP_HAMD5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229465315|gb|ACQ67089.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 716

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/694 (48%), Positives = 465/694 (67%), Gaps = 10/694 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF       ++    + +ETG +ARQ+  AV+     T VL TVV  +  K GQ FFPL+
Sbjct: 1   MFTPTICRFDYGQLKVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKPGQTFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER+YAVG+IP  + RRE+RP E E L SR+IDR IRPLF K + NE QVI  V+  
Sbjct: 61  VHYQERSYAVGRIPSNFFRRETRPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P +V+M+ ASA L LSG+PF  P+  A+V +ING YVLNP  +E  Q  L+L V+
Sbjct: 121 NPKVNPDIVAMIGASAVLSLSGIPFHEPIGAARVGFINGAYVLNPTPEELKQSDLNLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDS 234
           GT++AVLMVE EAN L+E+ +L AIIFGH + + VIE+I+ L K   K      P ++D 
Sbjct: 181 GTKNAVLMVESEANILTEEQMLGAIIFGHEQQQIVIESINDLVKKAGKLKWPFTPKIVDE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           K  S + EE     K+DL  +  I +K  R  +++++K  ++     E+ + N  +I  +
Sbjct: 241 KLRSCITEED----KKDLSNAYLITDKQERYAKLNEIKTNIIERILKENETVNAEQIQDI 296

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             + +  +VR  +L  + R+DGRD + +R + A  G+L RTHGS+LF RG+TQA+V  TL
Sbjct: 297 LYNFEKNLVRQRILKDEPRIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTL 356

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGH RLA+RA+  V+P
Sbjct: 357 GTSRDLQTIDDLMGERSDSFLFHYNFPPYSVGETGMLGSPKRREIGHARLAKRALMAVMP 416

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F+
Sbjct: 417 NIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKFV 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAGT  GITA+QMDMKI GI+  IM  AL  AK  RLHIL+ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTSEGITALQMDMKIQGITPEIMQSALHHAKAARLHILSV 536

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++V+S +   + ++ P +  + I P++I++VIG GG VIR + ++T  K++I DDG + 
Sbjct: 537 MNQVISSASSTISQYAPHIYNIKINPEKIKDVIGKGGAVIRALSDETDTKIDISDDGNIT 596

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA+ S      A++ I  IT   EV +IY+G V ++ D+GAFV    A++GLVHISQ++ 
Sbjct: 597 IAALSQKSAAFAQQRIEEITANIEVGRIYQGTVTRIADYGAFVSIASAKEGLVHISQIAE 656

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            RV K +D +K    V VK+L+ D +G+I+LS+K
Sbjct: 657 GRVEKVTDHLKLKQQVSVKVLEIDRQGRIRLSIK 690


>gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 738

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 36  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 95

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 96  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 155

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 156 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 215

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K     +P  ++      L 
Sbjct: 216 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 271

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + + GEI  +   ++  
Sbjct: 272 SRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEKD 331

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 332 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 391

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 392 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 451

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI G
Sbjct: 452 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 511

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S 
Sbjct: 512 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 571

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 572 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 631

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 632 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 691

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 692 DYLQMGQEVPVKVLEVDRQGRVRLSIK 718


>gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
 gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
          Length = 703

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/701 (49%), Positives = 475/701 (67%), Gaps = 18/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H     +  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFRYGNQQVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RES+ +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYFERTYAAGKIPGGFFKRESKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YIN  YVLNP   +  +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYINDTYVLNPTKHQMHRSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236
           GT+ AVLMVE EAN L EDV+L A+++GH + + VI AI++LA M    P + D K    
Sbjct: 181 GTESAVLMVESEANILPEDVMLGAVVYGHEQMQTVIAAINELASMV--NPELWDWKAPET 238

Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEI 291
                +K+++    +I E  ++      K  R  ++D+    +  +  + E  +  + EI
Sbjct: 239 NNDLVAKIKDISGSLIAEAFKIRS----KQARSAKLDEAWAAVEAALITEETDTLAKNEI 294

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +F+ ++A+VVR  +L  + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ V
Sbjct: 295 KGIFKHLEAEVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAV 354

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  
Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVA 414

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP+   F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAG+AMGL+ + +
Sbjct: 415 VLPKPEDFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDN 474

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHI
Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   + E   +L +  PR+  M I PD+IR VIG GG+ IR I  +T  ++NI DDG
Sbjct: 535 LTQMQAAV-EGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETNTEINIADDG 593

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649
            V IA+++    EAA+  I  IT   EV K+Y+GQVVK++D   GA V     +DGLVHI
Sbjct: 594 VVTIAATTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHI 653

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SQ++ ERV   SD ++ G TV VK L+ D+RG+++LSMK +
Sbjct: 654 SQITHERVKNVSDYLQVGQTVTVKALEVDERGRVRLSMKAL 694


>gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae
           Ep1/96]
          Length = 732

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 30  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 89

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 90  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 149

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 150 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 209

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K     +P  ++      L 
Sbjct: 210 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 265

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + + GEI  +   ++  
Sbjct: 266 SRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEKD 325

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 326 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 385

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 386 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 445

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI G
Sbjct: 446 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 505

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S 
Sbjct: 506 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 565

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 566 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 625

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 626 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 685

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 686 DYLQMGQEVPVKVLEVDRQGRVRLSIK 712


>gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
          Length = 710

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 470/687 (68%), Gaps = 10/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGTKGAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K     +P  ++      L 
Sbjct: 188 MVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEA----LR 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + + GEI  +   ++  
Sbjct: 244 SRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEKD 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 304 VVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FPY
Sbjct: 364 NLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI G
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S 
Sbjct: 484 DEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISG 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 544 PRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 604 KAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 664 DYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
 gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
          Length = 748

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/704 (46%), Positives = 481/704 (68%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G    PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGLLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  +V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSGSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG  GKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPSGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
              S V+K+GD V VKL+ FD++GK KL++K  D+    N  KP
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSSNNTKP 704


>gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida]
          Length = 684

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/667 (48%), Positives = 465/667 (69%), Gaps = 11/667 (1%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +A+  +T V  TVV  + +K+GQDFFPLTVNYQERTYA G+IPGG+ +RE RP+E E LI
Sbjct: 1   MASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLI 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           +R+IDR IRPLF + + NE Q++  V+  + +  P +V+M+ ASAAL LSG+PF GP+  
Sbjct: 61  ARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGA 120

Query: 152 AQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
           A+V +I+ Q+VLNP ++E  Q  LDL V+GT  AVLMVE EA+ L+E+ +L A++FGH +
Sbjct: 121 ARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQ 180

Query: 211 CKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
            + VI+AI +      K     +  +  + L E++  + +  L  +  I EK  R +QID
Sbjct: 181 QQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVKAIAEARLGEAYRITEKQARYEQID 240

Query: 270 DLKKKMVSYFSSEHSSW---NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
            +K  +++  ++E +     +EG+IV +F  +++++VR+ ++  + R+DGR  +TVR + 
Sbjct: 241 AIKADVIAQITAEVAEGEDISEGKIVDIFTALESQIVRSRIIAGEPRIDGRTVDTVRALD 300

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
              G+L RTHGS++F RG+TQA+ V TLGT  D Q +D L+G + + F+ HYNF P + G
Sbjct: 301 ICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVG 360

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+VSEITES+GSSSMA+VCG+SL
Sbjct: 361 ETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASL 420

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           ALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDHLG MDFKVAGT +G+TA+QMD
Sbjct: 421 ALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMD 480

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +KI GI+  IM +AL QAK  RLHIL  M + +   R  + +F PR+  M I P +I++V
Sbjct: 481 IKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDV 540

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP---EVNKIY 623
           IG GG  IR + E+TG  ++IDDDGTVKIA+    +  +A+E++  I D+    E   +Y
Sbjct: 541 IGKGGATIRALTEETGTSIDIDDDGTVKIAA---VDGNSAKEVMARIEDITAEVEAGAVY 597

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           KG+V ++ DFGAFV   G ++GLVHISQ++ ERV K SD +  G  V VK+++ D +G+I
Sbjct: 598 KGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRI 657

Query: 684 KLSMKVV 690
           +L+MK V
Sbjct: 658 RLTMKEV 664


>gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA6140]
          Length = 706

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/697 (48%), Positives = 474/697 (68%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ER YA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERNYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQ---MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE +++   +  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  + +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ I
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 658 HERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 707

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/705 (47%), Positives = 475/705 (67%), Gaps = 11/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T    +    + LETG IARQ+ GAV+    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKTTQSFRFGDHDVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF   + NE QVII+V+  
Sbjct: 63  VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSA 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D    P + +M+ ASAAL +SG+PF GP+   +V YI+ ++V+NP  ++ + S LDL V+
Sbjct: 123 DPAVDPDIPAMLGASAALAVSGIPFRGPIGACRVGYIDDKFVVNPTTEQLKTSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EA+ L E  +LDA++FGH E +  I AI++L     K     D +   K
Sbjct: 183 GTQRAVLMVESEADILPEKTMLDAVVFGHREMQVAINAINELVAKAGKP--AWDWQPAPK 240

Query: 240 LEEEMSQMIK---EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEI 291
            E  ++++++   + L  +  I  K  R +++ ++   +    +++  +      +  E+
Sbjct: 241 NEALIARIVEIADKGLHEAYAIRSKQPRTEKLREVYALVEQTLAADAEAAGTEAPDANEV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +  +++A +VR+ +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+V 
Sbjct: 301 NGILFELEAHLVRSQILAGEPRIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVT 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT++DEQ +D L   Q + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  
Sbjct: 361 TTLGTKQDEQIIDGLCEEQHDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALKA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +F YTLR+VSEI ES+GSSSMA+VCG  L+++DAGVP+   VAG+AMGL+K+G+
Sbjct: 421 VLPSPEEFQYTLRVVSEICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGN 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI+  IM  AL QA  GR HI
Sbjct: 481 RFAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIEGITPEIMQAALAQAHDGRQHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M ++      +L +F PR+    I P++IR+VIG GG VIR + E+TG  +N++DDG
Sbjct: 541 LSRMHEMAGGGAKELSDFAPRMISFKINPEKIRDVIGKGGSVIRALTEETGTTINVEDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I+S  +A +  AR  I  IT   E  +IY+G V +++DFGA V     +DGL+HISQ
Sbjct: 601 MVTISSPDMARVAEARRRIEEITAEVEAGQIYEGTVTRLLDFGAIVQLLPGKDGLLHISQ 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           ++ ERV   SD +KEG  V VK+++ D++G+++LSMK + +  G+
Sbjct: 661 IANERVNAVSDYLKEGQKVRVKVIEADEKGRVRLSMKALLREEGE 705


>gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str.
           Jake]
 gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake]
          Length = 796

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/705 (48%), Positives = 484/705 (68%), Gaps = 9/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ++GAV+ +Y  T VLATVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRKSTEWGGKTLILESGKIARQANGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDED-QGSLDLF 177
           D  + P V +++ A+AAL +SG+ F G V G ++ Y+  +  Y+LN   D+    SLDLF
Sbjct: 120 DTVTPPEVTALIGATAALSISGVSFNGLVAGVRIGYLPSEDKYLLNASADDMLYSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +SG +D+VLMVE EA++LSE  +L A+ FGH  C+ VI  I + ++    +PI     D 
Sbjct: 180 LSGNEDSVLMVESEASELSESQMLRAVTFGHQNCQEVINLIREFSEEKGVQPIEFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVS 293
           + +   +    K+D  ++     K  R  ++++L+ K++S F+ + S  N      +++S
Sbjct: 240 NPIVNYIESSYKQDFSLAYSNTVKKERVLKLEELRDKVLSDFAEKCSVDNVECDNQDVIS 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +  +  +VR+ +++   R+DGR  + +R+I  +V +L + HGS+LF RG+TQA+VV  
Sbjct: 300 ALKSFERSLVRSQIVETSSRIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTA 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI  VL
Sbjct: 360 LGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVL 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+GD F
Sbjct: 420 PEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEGDKF 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           IILSDI GDED+LG MDFKVAGT  G+TA+QMDMKI GIS +++  AL QAK GR+HIL+
Sbjct: 480 IILSDILGDEDYLGDMDFKVAGTAEGVTALQMDMKISGISVDVIEKALLQAKDGRMHILS 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+ V+ ESR  +    PR+E + I  D+IRNVIG GGK IR I E+TGAK+ I  DGTV
Sbjct: 540 KMNAVIQESRNSIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   +E A+ MI  I   PE+ K+++G VV+++ FGAFV+F G + GL+HIS++ 
Sbjct: 600 MIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIVKFGAFVNFLGGKRGLIHISEIK 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            E ++    V+   D V V ++   DR  ++LSM+ VDQ TG+PI
Sbjct: 660 NEHISAVGSVISVNDKVKVLVIGI-DREHVQLSMRRVDQETGEPI 703


>gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter
           fumaroxidans MPOB]
 gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 699

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/690 (48%), Positives = 471/690 (68%), Gaps = 10/690 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V++E  GRP+  E G IARQ+ G+VL  YG+TVVL     +  +++G DF PL V+YQ
Sbjct: 3   HSVQVEVGGRPMVFEAGEIARQAGGSVLMRYGDTVVLIAATKEDRIREGIDFVPLMVDYQ 62

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           E +YA G+IPGG+ RRE  RP+E E L SR+IDR IRPLF K Y  ETQV+  V+  D+E
Sbjct: 63  EMSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDME 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           + P VV++  AS AL +S +PF+GPV   +V  ING + +NP   E  +  L++ V+G++
Sbjct: 123 NEPDVVALTGASTALHISPVPFQGPVAAVRVGRINGSFAINPSAKELLESDLNVVVAGSR 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DAV+MVE  A+ +SED ++DAI FGH    P+++A  +L +  A    V ++       E
Sbjct: 183 DAVVMVEGGADFVSEDDLVDAIDFGHKAILPILDAQDELQRRIAP---VKEAPPEVVRNE 239

Query: 243 EMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + Q +++    ++R     PEK+ R  +   LK+++ +   S+     + +I ++ ED+
Sbjct: 240 SLVQAVRDAAAAEMRAVMTTPEKHPRRDRKKALKERIQAELVSDDPDRPK-QIDNILEDL 298

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +VVR +M+++  R+DGR  + +R I+ Q G+L RTHGS++F RG+TQ + VVTLG+  
Sbjct: 299 EKEVVRRMMVEEGRRIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLAVVTLGSSS 358

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +++L+G     FM+HYNF   + GEV  +  P RREIGHG LA R++  VLP+  +
Sbjct: 359 DEQKIEALAGETFKSFMLHYNFPAFSVGEVRPLRGPGRREIGHGALAERSVKAVLPRDGE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVCGSSLALMDAGVPI++PV GIAMGLVK+GD  I+LSD
Sbjct: 419 FPYTIRVVSEVLESNGSSSMATVCGSSLALMDAGVPITEPVGGIAMGLVKEGDKIIVLSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKV G++ GITA+QMD+KI GI   IM  AL+QA+ GR+ IL +M +V
Sbjct: 479 ILGDEDHLGDMDFKVTGSERGITAIQMDVKIAGIDRGIMQRALEQARAGRIFILGKMKEV 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           LS  R +L  + PRV  + I P++IR+VIG GGKVIR IV +TGAK++I+D G V I S 
Sbjct: 539 LSAPRPELSPYAPRVITIMINPEKIRDVIGPGGKVIRSIVAETGAKIDIEDSGKVVIMSP 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A  + A E IR +T  PEV ++Y  ++V+V DFGAF       +GL+HISQL   RV 
Sbjct: 599 DGAACDKAVERIRGLTQEPEVGQLYMSRIVRVTDFGAFAEILPNIEGLIHISQLEHRRVR 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K +DVV+EGD V VK+++ D  G+I+LS K
Sbjct: 659 KVTDVVQEGDEVLVKVIEIDKDGRIRLSRK 688


>gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
 gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
          Length = 701

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/679 (49%), Positives = 467/679 (68%), Gaps = 12/679 (1%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVGKIPGG 76
           LETGRIARQ+ GAVL T  + V +   V      D  + FFPL+V+YQE+TYA GKIPGG
Sbjct: 17  LETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIPGG 76

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           + +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  SA
Sbjct: 77  FFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSA 136

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AL +SG+PF+GP+  A+V +     Y+LNP  ++    SLD+ V+GT +AVLMVE EA +
Sbjct: 137 ALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVVAGTSEAVLMVESEAKE 196

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIK 249
           L+ED +L A++F H+E + VI A+ +LA   AK      P    ++    +  E    I 
Sbjct: 197 LTEDQMLGAVLFAHDEFQSVINAVKELAAEAAKPTWAWAPQAEATELLGAIRSEFGAAIS 256

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           +   ++     K  R  ++ +LK+++V+  S E    +  ++ + F +I+ + VR  +++
Sbjct: 257 DAYTITV----KADRYARLGELKEQVVAKLSGEEGQPSASDVKAAFGEIEYRTVRENIVN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L G 
Sbjct: 313 GKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGE 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VSEI
Sbjct: 373 KKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRVVSEI 432

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           TES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG M
Sbjct: 433 TESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDM 492

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L E 
Sbjct: 493 DFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSEN 552

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAAR+ 
Sbjct: 553 APTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAARQR 612

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG  
Sbjct: 613 VLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQE 672

Query: 670 VWVKLLDFDDRGKIKLSMK 688
           V V +LD D+RG+IKLS+K
Sbjct: 673 VEVLVLDVDNRGRIKLSIK 691


>gi|94676543|ref|YP_589052.1| polynucleotide phosphorylase/polyadenylase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|123384109|sp|Q1LSL2|PNP_BAUCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94219693|gb|ABF13852.1| polynucleotide phosphorylase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 697

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/677 (48%), Positives = 466/677 (68%), Gaps = 10/677 (1%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           LETG +ARQ+  AV+    +T+VL TVV  + +K GQ FFPL VNYQERTYA G+ PGG+
Sbjct: 18  LETGIVARQATAAVMVNMADTIVLVTVVGVKQVKPGQKFFPLMVNYQERTYAAGRFPGGF 77

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            RRE RP+E EILISRMIDR +RPLF   + NE QVI  V+  + + SP +V+M+  SAA
Sbjct: 78  FRREGRPSEGEILISRMIDRPLRPLFPDGFLNEVQVIATVVSINPQVSPDIVAMIGVSAA 137

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196
           L +SG+PF  P   A+V YIN QYVLNP + E    SLDL V+ T +AVLMVE EA QLS
Sbjct: 138 LSISGIPFNCPFGAARVGYINNQYVLNPTIAELVDSSLDLVVASTANAVLMVESEAKQLS 197

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKED 251
           E+ +L AIIFGH + + VI+ I+ +  +  K     +  VID+     L+  ++++ +  
Sbjct: 198 EEQMLSAIIFGHEQQQLVIQNINHMVTIVGKPKWSWQAQVIDTN----LQLCVTELAESR 253

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           L  +  I +K  R   I+ +K  ++S    ++ +  E  I ++F +++ ++ R  +L  K
Sbjct: 254 LNEAFCISDKQERDVCIETIKSDVLSALQQKNETIEEETISNIFANLEKQIARNRILGGK 313

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+ + +R +  +  +L RTHGS+LF+RG+TQA+V VTLGT  + Q +D L G + 
Sbjct: 314 LRIDGRNHKMIRSLDMRTSILPRTHGSALFVRGETQALVTVTLGTERNAQNIDELIGERT 373

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
           + F++HYNF P   GE+  +G+P RREIGHGRLA+R I  V+P   +FPYT+R+VSEITE
Sbjct: 374 DRFLLHYNFPPYCVGEIGLVGSPKRREIGHGRLAKRGILAVMPTANEFPYTVRVVSEITE 433

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S+GSSSMA+VCG+SLALMDAGVPI   VAG+AMGL+K+ ++F+ILSDI  +ED++G MDF
Sbjct: 434 SNGSSSMASVCGTSLALMDAGVPIKAAVAGVAMGLIKEDNNFVILSDILSNEDYIGDMDF 493

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           KVAG+ +GITA+QMD+K  GI+ NI+ +AL QAK  R+HILN M +V+S SR  +  F P
Sbjct: 494 KVAGSKNGITALQMDIKTKGITNNIIQLALNQAKDARMHILNMMEQVISMSRTDISPFAP 553

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
           R+  + I PD+I++VIG  G VIR + E+T   ++I+DDGTV +A++   + + A   I+
Sbjct: 554 RIHTIKIHPDKIKDVIGKCGSVIRALTEETKTIIDIEDDGTVTVAATDSIKAQQAICRIK 613

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            IT   EV  IY G+V +++DFGAF+     ++GLVHISQ++ +RV K +D +     V 
Sbjct: 614 DITAEIEVGSIYHGKVTRIVDFGAFIAISSNKEGLVHISQITNKRVEKVADYLSIDQIVL 673

Query: 672 VKLLDFDDRGKIKLSMK 688
           VK+L+ D +G+I+LSMK
Sbjct: 674 VKVLEVDRQGRIRLSMK 690


>gi|269961984|ref|ZP_06176339.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
 gi|269833307|gb|EEZ87411.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
          Length = 660

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/659 (49%), Positives = 458/659 (69%), Gaps = 9/659 (1%)

Query: 1   MFDVHTVE-IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V+  ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVYGHDQQQTVINAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  A   AA+E IR I ++    EV +IY G+V ++ DFGAFV     +DGLVHISQ++
Sbjct: 601 TEGA---AAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIA 656


>gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
 gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
          Length = 701

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/681 (49%), Positives = 466/681 (68%), Gaps = 12/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVGKIP 74
           + LETGRIARQ+ GAVL T  + V +   V      D  + FFPL+V+YQE+TYA GKIP
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    ++ P + +M+  
Sbjct: 75  GGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGT 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           SAAL +SG+PF+GP+  A+V +     Y+LNP  ++ + S LD+ V+GT +AVLMVE EA
Sbjct: 135 SAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVVAGTSEAVLMVESEA 194

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
            +L+ED +L A++F H+E + VI A+ +LA   AK      P    +     +  E    
Sbjct: 195 KELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEATALLGAIRSEFGAA 254

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           I +   ++     K  R  ++ +LK ++V+  S E    +  E+ + F +I+ + VR  +
Sbjct: 255 ISDAYTITV----KADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGEIEYRTVRENI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 311 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 370

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR+I  +LP    FPYT+R+VS
Sbjct: 371 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSISAMLPAADVFPYTIRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G  F IL+DI GDEDHLG
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAILTDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L 
Sbjct: 491 DMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELS 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           E  P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   +    EAAR
Sbjct: 551 ENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGETKEAAEAAR 610

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG
Sbjct: 611 QRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEG 670

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             V V +LD D+RG+IKLS+K
Sbjct: 671 QEVEVLVLDVDNRGRIKLSIK 691


>gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter
           hongkongensis HLHK9]
 gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9]
          Length = 701

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/695 (48%), Positives = 477/695 (68%), Gaps = 10/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    +KLETG IARQ+ G+VL +  +TVVL  V  ++ +K GQDFFPLT
Sbjct: 1   MFNKFSKTFQYGRHTVKLETGEIARQASGSVLVSMDDTVVLVAVTVNKDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL  R+IDR IRPLF   + ++ QV+  VM  
Sbjct: 61  VDYYERTYAAGKIPGGFFKREGKQSEKEILTCRLIDRPIRPLFPAGFYHDVQVVATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+ ASAA++L+G+PF GP+  A+V Y NG+Y+LNP   E   S LDL V+
Sbjct: 121 NPEVDADIPAMIGASAAMVLAGVPFMGPIGAARVGYANGEYILNPTKTELTTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKD 236
           GT+ AVLMVE EA QL E V+L A+++GH + +  I+AI++LA      P++ +   + +
Sbjct: 181 GTESAVLMVESEAQQLPEAVMLGAVVYGHEQMQAAIKAINELADEV--NPVIFEWAPAAE 238

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEIVSVF 295
            ++L  ++  + + D+  +  I +K  R + + +   K+  +  + E  +     I S+F
Sbjct: 239 DTELVAQVKALAEADVAAAFKIRQKQARSQALGEAWSKVKAALITEETETLRANHIKSLF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ++++A VVR  +L  + R+DGRD+ TVR I+ + G+L R HGS LF RG+TQA+V  TLG
Sbjct: 299 KELEANVVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T++DEQ +D+L+G   + FM+HYNF P +TGE  RMG P RREIGHGRLA+RA+  VLP+
Sbjct: 359 TKQDEQIIDALAGEYTDRFMLHYNFPPYSTGETGRMGPPKRREIGHGRLAKRALIAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F Y++R+VSEITES+GSSSMA+VCG  L+LM+AGVP+S  VAGIAMGL+ + + F +
Sbjct: 419 QEDFSYSMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLSAHVAGIAMGLILEDNRFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QAK GRLHIL  M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGIM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +   + +L    PR+  + I PD+IR+VIG GG VIR + E+TG  ++I +DG + I
Sbjct: 539 KSAIDAPQ-ELSTHAPRLYTLRINPDKIRDVIGKGGSVIRALTEETGTSIDIAEDGLITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           AS S    E A+  I  IT   E+ KIY+G VVK++D   GA V     RDGLVHISQ++
Sbjct: 598 ASVSAEGAEEAKRRIEEITAEVEIGKIYEGTVVKILDKNVGAIVQIMPGRDGLVHISQIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            ER+A  +D ++EG  V VK+L+ D+RG+I+LS+K
Sbjct: 658 NERIANVADHLQEGQQVRVKVLETDERGRIRLSIK 692


>gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
 gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
          Length = 709

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/691 (50%), Positives = 473/691 (68%), Gaps = 7/691 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I +    L LETG IARQ+ GAV+ T  +TVVL TVV  +++K GQDFFPLTV+YQER+Y
Sbjct: 8   ITYGRHQLTLETGEIARQAHGAVVVTMDDTVVLVTVVGAKNIKPGQDFFPLTVDYQERSY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE Q++  VM  D E  P +
Sbjct: 68  AAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADNEIDPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            S++  SAAL LSG+PF+GP+  A+V YIN +YVLNP   E + + L+L V+GTQ AVLM
Sbjct: 128 PSIIGTSAALTLSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLNLVVAGTQHAVLM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245
           VE EA +LSE+V+L A+ +GH + + VI+AI++ A             +KD S  EE+++
Sbjct: 188 VESEAIELSEEVMLGAVTYGHEQMQIVIDAINEFADEAGVTAWDWTPPAKD-SAFEEKIA 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IVSVFEDIQAKVVR 304
            M + DLR +  I +K  R + I   ++++ +       +  E +  +  F  +++K+VR
Sbjct: 247 MMAEADLRQAYKIKQKQTRSEAIKTTRERISNELGVGTENGPELQAFMEAFFSLESKIVR 306

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+ + TLGT  DEQ +D
Sbjct: 307 NQILDGEPRIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQKID 366

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           SL G     F++HYN  P ATGE+ R+G P RREIGHGRLA+RA+  VLP   +F Y+LR
Sbjct: 367 SLQGDYNERFILHYNMPPYATGEIGRVGTPKRREIGHGRLAKRALVAVLPPPEEFGYSLR 426

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMA+VC   LALMDAGVP+   VAGIAMGL+KDG+ F +L+DI GDED
Sbjct: 427 VVSEITESNGSSSMASVCSGCLALMDAGVPLKAHVAGIAMGLIKDGNRFAVLTDILGDED 486

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT+ GITA+QMD+KI GI++ IM  AL QA  GR+HIL  M + L  +R 
Sbjct: 487 HLGDMDFKVAGTEKGITALQMDIKIQGITKEIMHAALIQAHEGRMHILQIMKQALPSTRE 546

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +    PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V IA  S    E
Sbjct: 547 DISIHAPRIIKLKINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGQVTIACVSAEGGE 606

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A++ I  IT   EV KIY G V+K++DFGA V     +DGL+HISQ++ ERV   SD +
Sbjct: 607 LAKKRIEDITAEVEVGKIYDGVVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNVSDHL 666

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV--DQN 693
            EG  V VK+L+ DD+G+++LSMK V  D+N
Sbjct: 667 NEGQQVRVKVLEADDKGRLRLSMKAVSSDEN 697


>gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/703 (48%), Positives = 468/703 (66%), Gaps = 27/703 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + +E  GR L LETGR+A+Q+ G+VL TYG++VVL T    R  +   DF PLT+ YQER
Sbjct: 5   LSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQER 64

Query: 67  TYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
            YAVG+IPG + RRE  RPTENE L  R+IDR +RPLF+  Y+NETQVI  V+  D E+ 
Sbjct: 65  FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEND 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P +++M+ ASAAL +S +PF GPV G +V  I+G+YVLNP LD+   S LDL V+GT  A
Sbjct: 125 PELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSKA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239
           V+MVE  A+ L ED V + I F H   +P+I+   +L K   +      P  +D    ++
Sbjct: 185 VVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKEVGRPKMEVAPPPVDEDLRTR 244

Query: 240 LEE----EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVS- 293
           +E     EM+++I           +K  R +   +L++++++   ++  ++  E ++ S 
Sbjct: 245 VESLAAAEMTEVIS--------TADKKARGEAAHNLQERVLATLEADLVANTPEADLESK 296

Query: 294 ------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
                 + +D+Q K++R  ++ +  R+D R  + VR I+++V  L R HGS+LF RG+TQ
Sbjct: 297 LKEAKGLLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQ 356

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            +V  TLG+ +DEQ ++SLSG     FM+HYNF P   GEV  +  PSRR+IGHG LA R
Sbjct: 357 VLVSATLGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAER 416

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI  VLP    FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ K V+GIAMGL+
Sbjct: 417 AIQAVLPDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLI 476

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+G++  ILSDI GDEDHLG MDFKVAGTD GITA+QMD+K+ G+S  IM  AL QAK  
Sbjct: 477 KEGEEVAILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDA 536

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RLHIL +M + L   R ++ E  P++  + I PD+IR+VIG GGKVIRGI    G K+++
Sbjct: 537 RLHILEKMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKIDV 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG VKI + +    +  RE++ S+T   E+ KIY G V K+MDFGAFV      DGLV
Sbjct: 597 EDDGKVKIFAPNGEVADQVRELVLSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTDGLV 656

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           HIS+L   RV K +DV+KEGD V VK+LD D RGKI+LS K V
Sbjct: 657 HISELENRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699


>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 697

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/695 (46%), Positives = 477/695 (68%), Gaps = 3/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + L+TG IARQ++ +V+ +  +T VL TVV    +K  QDFFPL 
Sbjct: 1   MINSTIYKFQYGKHTIILDTGTIARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLV 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GK PGG+ RRE RP+E+EIL +R+IDR IRPLF K + N+ Q+I  V+  
Sbjct: 61  VNYQERTYAAGKFPGGFFRREGRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + SP +V+++ ASAAL LS +PF GP+  A+V YIN QYVLNP + E   S LDL +S
Sbjct: 121 NPQISPDIVAIIGASAALSLSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLDLVIS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+  +LMVE E++ LSE  +L+AIIFGH + + VI  I+KL +   K   +   K+   
Sbjct: 181 GTESNILMVESESSLLSEKEILNAIIFGHEQQQIVIHNINKLVQEIGKSKFIWKRKELDL 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
            L++ +S + +  L     + ++  R  Q++++K+ ++ +   ++S + N  EI+     
Sbjct: 241 SLQKYLSDLYESRLNCISIVRDRKGRQIQLNNIKQDVIDFSCIKYSNTMNGNEIMYFLNY 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +++R  +L   +R+DGR  + +R+I  ++G+L RTHGS+LF RG+TQA+V VTLGT 
Sbjct: 301 LEVQLLRQYILKNNLRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTE 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L+G + + F+MHYNF P   GE+  +GAP RREIGHGRLA+R +  V+P + 
Sbjct: 361 RNAQNLDELTGDRVDRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDSN 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA++CG+SLALMDAGVPI + VAG+AMGL+K+ ++F++LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEENEFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI  DEDH+G MDFKVAG   GITA+QMD+KI GI+  I+ +AL+++K  RL ILN M +
Sbjct: 481 DIISDEDHIGDMDFKVAGGKQGITALQMDIKINGITYEIIHVALEKSKLARLKILNFMEQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+   R  + EF PR+  + I PD+I++VIG GG VIR + E+T   ++I+DDG +KI S
Sbjct: 541 VIKIPRKNISEFAPRIYNIKINPDKIKDVIGKGGSVIRALTEETNTIIDIEDDGLIKIVS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +  + + A   I+ IT    +  +Y G+V  +++FGAF+     ++GL+HISQ+S +R+
Sbjct: 601 LNAEKAKQAMSRIQEITANIAIGSVYTGKVTHIVEFGAFITIFSGKEGLLHISQISEKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            K SD +K G  V VK+LD D +G+I+LSM+ ++ 
Sbjct: 661 GKVSDYLKLGQEVLVKVLDIDRQGRIRLSMRGINH 695


>gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/703 (48%), Positives = 468/703 (66%), Gaps = 27/703 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + +E  GR L LETGR+A+Q+ G+VL TYG++VVL T    R  +   DF PLT+ YQER
Sbjct: 5   LSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQER 64

Query: 67  TYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
            YAVG+IPG + RRE  RPTENE L  R+IDR +RPLF+  Y+NETQVI  V+  D E+ 
Sbjct: 65  FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEND 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P +++M+ ASAAL +S +PF GPV G +V  I+G+YVLNP LD+   S LDL V+GT  A
Sbjct: 125 PELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSKA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239
           V+MVE  A+ L ED V + I F H   +P+I+   +L K   +      P  +D    ++
Sbjct: 185 VVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKDVGRPKMEVAPPPVDEDLRTR 244

Query: 240 LEE----EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVS- 293
           +E     EM+++I           +K  R +   +L++++++   ++  ++  E ++ S 
Sbjct: 245 VESLAAAEMTEVIS--------TADKKARGEAAHNLQERVLATLEADLVANTPEADLESK 296

Query: 294 ------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
                 + +D+Q K++R  ++ +  R+D R  + VR I+++V  L R HGS+LF RG+TQ
Sbjct: 297 LKEAKGLLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQ 356

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            +V  TLG+ +DEQ ++SLSG     FM+HYNF P   GEV  +  PSRR+IGHG LA R
Sbjct: 357 VLVSATLGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAER 416

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI  VLP    FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ K V+GIAMGL+
Sbjct: 417 AIQAVLPDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLI 476

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+G++  ILSDI GDEDHLG MDFKVAGTD GITA+QMD+K+ G+S  IM  AL QAK  
Sbjct: 477 KEGEEVAILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDA 536

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RLHIL +M + L   R ++ E  P++  + I PD+IR+VIG GGKVIRGI    G K+++
Sbjct: 537 RLHILEKMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKIDV 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG VKI + +    +  RE++ S+T   E+ KIY G V K+MDFGAFV      DGLV
Sbjct: 597 EDDGKVKIFAPNGEVADQVRELVLSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTDGLV 656

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           HIS+L   RV K +DV+KEGD V VK+LD D RGKI+LS K V
Sbjct: 657 HISELENRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699


>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
 gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
          Length = 716

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/701 (49%), Positives = 472/701 (67%), Gaps = 18/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++    + LETG IARQ+ GAV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKSFQYGKHTVTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y NGQY+LNP   E   S LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYANGQYLLNPSKTELATSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--- 236
           GT+ AVLMVE EAN L EDV+L A++FGH + + VI AI++LA      P V D K    
Sbjct: 181 GTKQAVLMVESEANILPEDVMLGAVVFGHEQMQAVINAINELADEV--NPEVWDWKAPET 238

Query: 237 ----FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEI 291
                +K+ E     I E  ++     +K  R  ++D+    +  +  + E  +  + EI
Sbjct: 239 NTELVAKVREIAGATIAEAFKIR----QKQARSAKLDEAWAAVEAALINEETDTLAKNEI 294

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +F+ ++A VVR  +L  + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ V
Sbjct: 295 KGIFKQLEADVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAV 354

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  
Sbjct: 355 ATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVA 414

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP    F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + +
Sbjct: 415 VLPDPEDFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDN 474

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHI
Sbjct: 475 KFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHI 534

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M   ++  + +L +  PR+  M I PD+IR VIG GG+ IR I  +T  ++NI DDG
Sbjct: 535 LSQMQAAVAGPQ-ELSQHAPRLYTMRINPDKIREVIGKGGETIRSITAETHTEINISDDG 593

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHI 649
            V IA+++    EAA+  I  IT   EV K+Y+G VVK++D   GA V     +DGLVHI
Sbjct: 594 VVTIAATTAEAGEAAKARIEMITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHI 653

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SQ++ ERV   +D +K G  V VK LD D+RG+++LS++ +
Sbjct: 654 SQIAHERVKDVNDYLKVGQVVNVKALDVDERGRVRLSIRAL 694


>gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM
           12804]
 gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii]
          Length = 719

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/697 (47%), Positives = 477/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+++ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSQMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSEDV+L  +++GH + +  I AI  L +   K       +  ++
Sbjct: 181 GTENAVLMVESEAKQLSEDVMLGGVVYGHEQMQAAINAIHDLVRDAGKPDWEWQPEPKNE 240

Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
                     ++  V+ +   +K  R   + ++   + +  + + ++  +       + +
Sbjct: 241 ALIAAVTAAAQEKLVAAYQERQKQARTALLRNVYADVHAALAEQAAAAGQDAPDAVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A++VR  +L+ + R+DGRD+ TVR I  ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEARIVRGQILNGEPRIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  +L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALVSLL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ D   F
Sbjct: 421 PAHEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTQNGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMREALEGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A+ + A+  I  +T   EV ++Y G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSVKAI 697


>gi|167630367|ref|YP_001680866.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
           modesticaldum Ice1]
 gi|257096694|sp|B0THS2|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
           modesticaldum Ice1]
          Length = 709

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/693 (48%), Positives = 469/693 (67%), Gaps = 4/693 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L +ETGR+A+Q+ G+VLA YG+TVVL T    +  + G DFFPLTV+Y+ER Y
Sbjct: 6   MEIAGRTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDYEERLY 65

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RPTE  IL +R+IDR IRPLF K ++N+ QV+  VM  D +  P +
Sbjct: 66  AVGKIPGGFIKREGRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQDCPPDI 125

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           V M+ AS AL LS +PFEGP+ G  V  ++G+ ++NP +++ + S + L V+GT+DAV+M
Sbjct: 126 VGMIGASCALSLSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSDMHLVVAGTKDAVMM 185

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246
           VE  AN++ E+ +++AI+FGH E + ++    ++  +  K    +  K  + +LE+ + +
Sbjct: 186 VEAGANEVPEEDMIEAIMFGHQEIQRIVAFQEEMVAVAGKPKREVPLKQINPELEQAVRE 245

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
            + + LR +   P+K  R   I  + K+ V      H    E +I +V + ++ ++VR +
Sbjct: 246 YVGDKLRNAIQNPDKLSREADIQAVMKETVEALLP-HFPEEEKDIRTVLDTMEKEIVRKL 304

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +   K R DGR  + +R IS +VG+L RTHGS LF RG TQ + V TLGT  D Q +D L
Sbjct: 305 ITVDKQRPDGRKMDEIRPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQILDGL 364

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +   +M HYNF P + GE   M  P RREIGHG LA RA+ PV+P   +FPYT+R+V
Sbjct: 365 GVEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDEFPYTIRLV 424

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE  ES+GS+SMA+VCGS+L+LM+AGVPI KPVAGIAMGL+K+G+ F ILSDI G EDHL
Sbjct: 425 SEAVESNGSTSMASVCGSTLSLMNAGVPIKKPVAGIAMGLIKEGEHFSILSDIQGMEDHL 484

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  G+TA+QMD+KI G++  I+  ALQQA++GRL IL++M  V+ +   ++
Sbjct: 485 GDMDFKVAGTADGVTALQMDIKIKGVNREILTQALQQARKGRLFILDKMLAVIDKPAAEM 544

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             + PR+  M+I PD+IR VIG GGKVI  I+ +TG K++I+DDG + IA++       A
Sbjct: 545 SPYAPRIITMSIDPDKIREVIGPGGKVINKIIAETGVKIDIEDDGRIFIAATDTEAANKA 604

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
             +I SIT   EV K+Y G+V ++M+FGAFV     ++GL+HISQL+ ERVAK  DVVK 
Sbjct: 605 VRIIESITADVEVGKVYTGKVTRIMNFGAFVEVLPGKEGLIHISQLAEERVAKVEDVVKI 664

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           GD V VK+++ D +G+I LS K V     KP V
Sbjct: 665 GDEVTVKVVEIDKQGRINLSRKEV-LKANKPAV 696


>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
          Length = 712

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   + +  L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVNADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
          Length = 712

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/685 (47%), Positives = 473/685 (69%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++ IM I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIIIMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
           propionicus DSM 2032]
          Length = 695

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/689 (48%), Positives = 460/689 (66%), Gaps = 7/689 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HTVE E  GR +  ETG++A+Q++G+V+ + G+T VL TVV +   KD   F PLT+ Y
Sbjct: 2   IHTVETEIGGRTIAFETGKMAKQANGSVVVSSGDTKVLVTVVAESESKD-MGFLPLTIEY 60

Query: 64  QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           QER YA G+IPG Y RRE  RP+E E+L  R+IDR +RPLF   Y  ETQ+I  V   D 
Sbjct: 61  QERMYAAGRIPGSYFRREIGRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQ 120

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E  P +++M  AS ALMLS +PF GPV  A+V Y++GQYVLNP   + ++  ++L V+GT
Sbjct: 121 EFDPDILAMNGASMALMLSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQINLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSK 239
           + AV+MVE +A++++ED VL+AI F H   +P+I+    L +    AK  +V  + +   
Sbjct: 181 RSAVVMVEGKASEMAEDTVLEAIFFAHAGIQPLIDLQINLREQAGKAKREVVAPTVN-QA 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+E++  +    +       EK  R  +   LK+++++    E       E+  +    +
Sbjct: 240 LKEKVEAVAASGMDEVVTTAEKMARAARYSKLKEEVLAQIDPELY-QQPSEVTELLSGYK 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +V+R  ++ K +R+DGR  E VR IS +VG+L R HGS+LF RG+TQA+V+ TLG+  D
Sbjct: 299 KQVMRDRIVGKGMRLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ+++ L G     FM+HYNF P   GEV  +  PSRR+IGHG LARR I  VLP    F
Sbjct: 359 EQHLEGLGGDVYRRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGTLARRGIEAVLPANDSF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYTLR+VSE+ ES+GSSSMATVCG SLALMDAGVP+  PV+G+AMGL+K+GD  ++L+DI
Sbjct: 419 PYTLRVVSEVLESNGSSSMATVCGGSLALMDAGVPVKAPVSGVAMGLIKEGDQVVVLTDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GIT +QMD+KI G+   IM  AL QAK+GR+HIL +M   L
Sbjct: 479 LGDEDHLGDMDFKVVGTRQGITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILEKMEGAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R  + E  P+   + I PD+IR++IG GGKVIR +  +  +K++++DDGTVKI S+S
Sbjct: 539 SSPRTVVSEHAPKYVTLKIHPDKIRDIIGPGGKVIREMTTEFDSKIDVEDDGTVKIFSNS 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                A  + I+ IT VPEV  IY+G+V  + +FGAFV      DG+VHIS+L+ +RV K
Sbjct: 599 SESANALIKRIQQITAVPEVGAIYEGEVRTIKEFGAFVQILPGTDGMVHISELANDRVKK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +DVVKEGD + VK++D D+RG+I+LS K
Sbjct: 659 VTDVVKEGDIIKVKVIDIDNRGRIRLSRK 687


>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
 gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
          Length = 705

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/699 (49%), Positives = 477/699 (68%), Gaps = 10/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHIKTFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+N  YVLNP   +  +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ L EDV+L A+++GH + + VI+AI++LA      P V D K    
Sbjct: 181 GTAQAVLMVESEADILPEDVMLGAVVYGHEQMQAVIQAINELADEV--NPEVWDWKAPET 238

Query: 240 LEEEMSQM--IKEDLRVSCF-IPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEIVSVF 295
             E ++++  I   L    F I +K  R  ++D+    +  +  + E  +  + EI  +F
Sbjct: 239 NAELVAKVKDISGSLIAEAFKIRQKQARTAKLDEAWAAVEAALINEETDTLAKNEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +L  + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KQLEADVVRSQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + + F +
Sbjct: 419 PEDFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +S  + +L +  PR+  M I PD+IR VIG GG+ IR I  +T  ++NI +DGT+ I
Sbjct: 539 QAAVSGPQ-ELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETNTEINIAEDGTITI 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           A+++    EAA+  I +IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 598 AATTAEAGEAAKARIETITAEVEVGKVYEGTVVKLLDNNVGAIVTIMPGKDGLVHISQIT 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ERV   SD ++ G TV VK L+ D+RG+++LSMK + +
Sbjct: 658 HERVKNVSDYLQVGQTVQVKALEVDERGRVRLSMKALTE 696


>gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70]
 gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70]
          Length = 712

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/685 (46%), Positives = 468/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+WAGRPL +E G++A+Q++GAVL  YG+TVVL T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDWAGRPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF++ ++NE Q++  VM  D + SP +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            ++  AS AL +S +PFEGP+ G  V  ++G++V+NP +++ + S + L V+GT+DA+ M
Sbjct: 129 AALFGASLALTISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + +   +   +LE E+ Q
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAEIRQ 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           + +ED++ +  +PEK  R   I+++K  +++ Y   E       ++  +   +  + VR 
Sbjct: 249 LAEEDIKRAVQVPEKLARDAAIEEVKASVIAKYEEQEADEETLKQVNEILHKLVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++K+R DGR  + +R +S++VG+L RTHGS LF RG TQ + V TLG   D Q +D 
Sbjct: 309 LITEEKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPYT+R+
Sbjct: 369 LGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D++ IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDNYTILTDIQGIEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL  M + + E R +
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIKGLSREILEEALQQAKKGRMEILEHMMQTIREPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++  M I P++IR VIG  GK I  I+++TG K++I+ DGT+ I+S + A  + 
Sbjct: 549 LSKYAPKILTMQINPEKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVNEAMNQK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV +  DVV 
Sbjct: 609 AKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS K V
Sbjct: 669 IGDEILVKVMEIDKQGRVNLSRKAV 693


>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
 gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
          Length = 712

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+WAGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDWAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 712

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 712

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
 gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
          Length = 717

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M + D+  +  + EK+ R   I  +KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PVLP    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R++
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    E 
Sbjct: 549 LSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
 gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
          Length = 712

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+ E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI]
 gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 712

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    R  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis
           str. McKiel]
 gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis
           str. McKiel]
          Length = 747

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/704 (46%), Positives = 483/704 (68%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DG+V    G +V+L T V   + K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGSVTVKMGNSVLLCTAVVANTAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YAVGKIPGG+ +RE + +E E+L+SR+IDR IRPLF   + NET V   V+ +
Sbjct: 61  INYREMAYAVGKIPGGFFKREGKASEREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALALSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT ++V+MVE EA+ LSE  +L+A+ FG    +PV++ I +LA+   +  + +     S 
Sbjct: 181 GTTESVMMVESEAHLLSEAQMLEAVKFGFESFQPVVKIIKELAEEAKRPKLEMQDLYPSV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L+ E+ Q+  +++  +  I  K  R   +D + +K++++F S  E+  +N  +I S  + 
Sbjct: 241 LKNEIEQLFAKEIEQAFAIKSKQERSTSLDLISEKVITHFISNIENKKYNNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++ ++R  +L+K  R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  TLGT 
Sbjct: 301 VESDILRKEILEKNKRIDGRSTMDIRQIACEVGLLPSAHGSALFTRGETQSLVSSTLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VD+L G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDNLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM  G+PI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMQTGIPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGK+I+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   +++ A + I++I   PE+ +I+ G V K++D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 ADRDKLKIASDKIKAIAIEPEIGEIFNGTVTKILDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
              S V+K+GD V VKL+ FD++GK KL++K  D+    N  KP
Sbjct: 661 DTVSSVIKQGDIVKVKLIGFDNKGKAKLTIKNADKDKSLNNPKP 704


>gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium
           violaceum ATCC 12472]
 gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium
           violaceum ATCC 12472]
          Length = 722

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/703 (48%), Positives = 482/703 (68%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   ++  + + LETG IARQ+ G+V+ +  +TVV+ +VV  +++K GQDFFPLT
Sbjct: 9   VFNKITKTFQFGRQTVTLETGEIARQASGSVVVSVDDTVVMVSVVGGKNVKPGQDFFPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E E+L SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 69  VDYLERTYAAGKIPGGFFKREGKQSEKEVLTSRLIDRPIRPLFPEGFYHDVQIVATVLSL 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+ ASAAL +SGLPF GP+  A+V Y NG+Y+LNP   E Q S +DL V+
Sbjct: 129 NPEVDSDIPAMIGASAALAISGLPFAGPIGAARVGYANGEYILNPTKTELQTSQMDLVVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA +L E V+L A++FGH + +  I+AI++LA      P++ D    +K
Sbjct: 189 GTSRAVLMVESEAKELPEAVMLGAVVFGHEQMQAAIKAINELADEV--NPVMFDWAAPAK 246

Query: 240 LEEEMSQM---IKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEHSSWNEGEIVSVF 295
            E  ++Q+     E L  +  + +K  R   I++    +     + E  +    EI  +F
Sbjct: 247 DEALIAQIRGIAGEKLAEAFRLRQKQARTVAINEAWDAVKAGLINEETDTLKANEIKGIF 306

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A++VR  +L  + R+DGRD+ TVR IS +  +L RTHGS+LF RG+TQA+VV TLG
Sbjct: 307 KSLEAEIVRGQILAGEARIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLG 366

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T++DEQ +D+L+G     FM+HYNF P +TGE  RMG P RREIGHGRLA+RA+  VLP 
Sbjct: 367 TKQDEQIIDALAGEYTERFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALVAVLPP 426

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F Y++R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 427 EDEFGYSMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAV 486

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL+QAK GRLHIL  M
Sbjct: 487 LTDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITKEIMQVALEQAKEGRLHILGLM 546

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +   + +L    PR+ +M I P++IR VIG GG+ IR I + TG ++NI++DGT+ I
Sbjct: 547 KEAVDGPQ-ELSAHAPRLYVMKINPEKIREVIGKGGETIRSITKDTGCEINIEEDGTITI 605

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLS 653
           AS S    EAA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++
Sbjct: 606 ASVSSEGAEAAKKRIEEITVEVEVGKVYEGTVVKILDNNVGAIVSILPGKDGLVHISQIA 665

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            ER+   SD +KEG  V VK ++ DDRG+I+LS+K + +   K
Sbjct: 666 NERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEEEAK 708


>gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123747829|sp|Q493T3|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 699

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/700 (47%), Positives = 477/700 (68%), Gaps = 12/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M D    + ++    + L+ G IARQ++ AV+ +  +T VL TVV    ++  QDFFPL 
Sbjct: 1   MLDPIIHKFKYGQHTVILDIGTIARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLV 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GK PGG+ RRE RP+ENE L SR+IDR IRPLF K + N+ QV+  V+  
Sbjct: 61  VNYQERTYAAGKFPGGFFRREGRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+++  SAAL LS +PF GP+  A+V YI  QYVLNP   E   S LDL +S
Sbjct: 121 NPQVNPDIVAIIGVSAALSLSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLVIS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+  +LMVE E+  LSE  +LDAIIFGH + + VI  I+KL K   K     + K+ + 
Sbjct: 181 GTESNILMVESESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKVGKTKYSWNEKEVNI 240

Query: 239 KLEEEMSQMIKEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVF 295
            L+  +S++ +   + + CF  +K  R  Q+D +KK +V     S +H++ +E EI+ + 
Sbjct: 241 SLKTYLSELYESRAQDIYCFFDKKE-RHAQVDSIKKDIVKTVLNSYQHAAVDEKEIMYLL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             ++A+ +R  +L  K+R+DGR  +T+R I  + G+L RTHGS+LF RGDTQA+V VTLG
Sbjct: 300 NYLEAQSIRYRILTNKLRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L+G + + F++HYNF P   GE+  +GAP RREIGHGRLA+R +  V+P 
Sbjct: 360 TERDAQNIDGLTGIRVDRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGMLAVMPN 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA++CG+SLALMDAGVPI   VAG+AMGL+K+G+DF++
Sbjct: 420 ANEFPYTIRVVSEITESNGSSSMASICGTSLALMDAGVPIKAAVAGVAMGLIKEGNDFVV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI  DEDH+G MDFKV+G+  GITA+QMD+K  GI+ +I+ +AL++AK  RL IL+ M
Sbjct: 480 LSDIVSDEDHIGDMDFKVSGSRQGITALQMDIKTDGITYDIINIALKKAKNARLQILDVM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +++     ++ +F PR+  + + PD+I++VIG GG VIR + E+T   ++I+D+G +KI
Sbjct: 540 EQIIKFPNQEISKFAPRIYSIKVNPDKIKDVIGKGGSVIRSLTEETNTIIDIEDNGIIKI 599

Query: 596 ASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            +    + + A++ IR I D+    E+  +Y G+V  +++FGAFV     ++GLVHISQ+
Sbjct: 600 VA---LDYDKAKQAIRRINDITANVEIGAVYTGKVSHIVEFGAFVTILSGKEGLVHISQI 656

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           S  R+ K +D +K G  V VK+L+ D +G+I+LSMK V Q
Sbjct: 657 SERRINKVTDYLKLGQKVLVKVLEIDRQGRIRLSMKGVHQ 696


>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
          Length = 717

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+ E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
 gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
          Length = 712

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+ E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           weihenstephanensis KBAB4]
 gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
 gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
          Length = 717

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M + D+  +  + EK+ R   I  +KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PVLP    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R++
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    E 
Sbjct: 549 LSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 712

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADVDTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+ E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
 gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
          Length = 712

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   K  + I   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+ +KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R++
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRIE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I  DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIKQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
 gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
          Length = 703

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/695 (48%), Positives = 467/695 (67%), Gaps = 13/695 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   VE +     +K+ TG++A+Q+ GAV+ + G+T+VL TVV  +  K GQDFFPLTV
Sbjct: 3   FNEKCVEAQVGNMNVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKPGQDFFPLTV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NY E+TYA GKIPG + +RE RP+E+E LI R+IDR IRPLF + Y  +TQV+  V+  +
Sbjct: 63  NYTEKTYAGGKIPGSFFKREGRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISAE 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+ ASAALM+S +PFEGP+ G +V  ++G+ + NP  ++ + S L++ V+ 
Sbjct: 123 EDHDPAILSMIGASAALMISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDLEIVVAA 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKE---PIVIDSK 235
            +DA+ MVE EA+ +SE+ +L+A+ F  +  + ++ A  +LA+    AK    P+V+D  
Sbjct: 183 GKDAIFMVEGEADFVSEEDLLEAVFFAKDAVQGILAAQEELARQVGVAKREVAPLVVDEA 242

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             +K++      I +  ++     E+Y    QI   K+++V+  + E    ++ EI    
Sbjct: 243 LKAKVKALAFDRIAQAFKIKA-KQERYAAVAQI---KEEVVAALAEEFEGRDK-EIKGFI 297

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            DI+   +R  +L+  +R+DGRD++TVR I+ + GLL R HGS+LF RG+TQ +   TLG
Sbjct: 298 GDIEYDRMRHDVLETGIRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLG 357

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T +DEQ +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RAI  +LP 
Sbjct: 358 TSQDEQRMDSLYGEYRKKFMLHYNFPPFSVGETSFRLAPGRREIGHGMLAERAISAILPN 417

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+RIV+E  ES+GSSSMATVCG  L+LMDAGVP+  PVAGIAMGL+K+G+   I
Sbjct: 418 HDDFPYTIRIVAETLESNGSSSMATVCGGCLSLMDAGVPVKAPVAGIAMGLIKEGEKVAI 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAG+  G+TA+QMD+KIGG+S+ IM  AL+QAK GRLHIL +M
Sbjct: 478 LTDILGDEDHLGDMDFKVAGSADGVTALQMDIKIGGVSKEIMQQALKQAKEGRLHILGKM 537

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--GTV 593
           ++ L+  R ++  F PR+  + I PD+IR+VIG GGK IR I E TG  ++ID D  G +
Sbjct: 538 AQCLAAPREEMSAFAPRITTIWIKPDRIRDVIGTGGKTIRSITEATGVMIDIDSDNSGKI 597

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS  A  +AA +MIR +TD  E  K+Y G V K+M+FGAFV      DGLVHIS+L 
Sbjct: 598 NIASSDKAACDAAIQMIRGLTDEVEEGKLYMGTVKKIMEFGAFVEVLPGTDGLVHISELD 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             RV   +D++ EGD V VK +  D +GKIKLS K
Sbjct: 658 ETRVKNVTDILNEGDKVLVKCIGVDKQGKIKLSRK 692


>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L]
 gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Kruger B]
 gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Vollum]
 gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
 gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 712

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
           ATCC 43325]
 gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
           ATCC 43325]
          Length = 666

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/644 (49%), Positives = 447/644 (69%), Gaps = 5/644 (0%)

Query: 50  LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN 109
           +K+GQDFFPLTVNYQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + N
Sbjct: 1   MKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYN 60

Query: 110 ETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169
           E Q++  V+  + +  P +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP ++E
Sbjct: 61  EIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMNE 120

Query: 170 D-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
             Q  LDL V+GT  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI +      K 
Sbjct: 121 QKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHEQQQVVIEAIKEFTAQAGKP 180

Query: 229 PI-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286
               +  +  + L E++  + +  L  +  I EK  R +QID +K  +++  ++E +   
Sbjct: 181 RWDWVAPEPNTALIEKVKAIAESRLGEAYRITEKQSRYEQIDAIKADVIAQITAEVAEGE 240

Query: 287 --NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             +EG+I+ +F  +++++VR  +L+ + R+DGR  +TVR +    G+L RTHGS++F RG
Sbjct: 241 EVSEGKIIDIFTALESQIVRGRILNGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRG 300

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQA+ V TLGT  D Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRL
Sbjct: 301 ETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRL 360

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+R +  V+P  A+FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAM
Sbjct: 361 AKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 420

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GLVK+ + F++LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QA
Sbjct: 421 GLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQA 480

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  RLHIL  M + +   R  + +F PR+  M I P +I++VIG GG  IR + E+TG  
Sbjct: 481 KSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTS 540

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++IDDDGTVKIA+      +     I  IT   E   +YKG+V ++ DFGAFV   G ++
Sbjct: 541 IDIDDDGTVKIAAVDANSAKDVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKE 600

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           GLVHISQ++ ERV K SD +  G  V VK+++ D +G+I+L+MK
Sbjct: 601 GLVHISQIAEERVEKVSDYLAVGQEVSVKVVEIDRQGRIRLTMK 644


>gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
           II '5-way CG']
          Length = 713

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/690 (48%), Positives = 462/690 (66%), Gaps = 8/690 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE    G+ ++LETGR+A+Q+DG+V+     TVV+AT V  +  K G DF PLTV+YQER
Sbjct: 6   VEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQER 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGG+ +RE +P+E EIL SR+IDR +RPLF + +  +TQ+I +V+  D     
Sbjct: 66  AYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGIS 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++VA+SAAL +S +PF  PV   +V  ++G +++NP LDE ++ +LDL V+GT+DA+
Sbjct: 126 DVMAVVASSAALYVSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAGTRDAI 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKL 240
           +MVE + N++SE+  L AI   H    P+IEA  KL  M  KE      + I  K    +
Sbjct: 186 MMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAMPIPPKVMEMV 245

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298
           E   +  ++E L+++     +    + + D+++K++  FS  S  +   E EI + F ++
Sbjct: 246 ESMGASRLREALKIAVKQERQDQTAQILGDVREKILQEFSATSPETVVEEREIFNAFHEL 305

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +++R ++LD KVR DGR    +R I+ +VG+L RTHGS+LF RG+TQ++ V TLGT +
Sbjct: 306 ERRIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSD 365

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G     FM+HYNF P + GE   M  P RREIGHG LA RA+ PVLP    
Sbjct: 366 DEQRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDS 425

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY++R+VS+I ES+GSSSMATVCG SLA+MDAG+PI   VAGIAMGL+K+GD   ILSD
Sbjct: 426 FPYSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAILSD 485

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKV GT++GITA+QMD+KI GI+  +M  ALQ+A+ GRL+I+ +M   
Sbjct: 486 ILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMREALQKAREGRLYIMEKMKMA 545

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  SR  +  F PR+  + I  D+IR VIG GGKVIRGI E+TGAK+ IDD G ++IAS+
Sbjct: 546 LPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLIQIAST 605

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A +MI  I +  +V KIY G+V  V D+GAFV       GL HISQL   RV 
Sbjct: 606 DEVAAQKAIDMINQIVEEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQLEDRRVE 665

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K SDVV EGD + VK L+ D +GKI+LS K
Sbjct: 666 KVSDVVSEGDLILVKALEVDRQGKIRLSRK 695


>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
 gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
          Length = 712

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   K  + I   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+ +KK+++ ++ +E +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Paenibacillus polymyxa E681]
 gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) [Paenibacillus polymyxa E681]
          Length = 700

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/688 (47%), Positives = 459/688 (66%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE++  GR L LETGR+A+Q++ AV  +YGETVVL TV   R  KD  DFFPLTVNY+ER
Sbjct: 5   VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP++  IL SR+ DR IRPLF + ++N+ QV+  VM  D +  P
Sbjct: 64  LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            + +M+  SAAL +S +PF GP+ G  V  ++GQ+V+NP + +   S L L V+GT+DA+
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTKDAI 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           +MVE E N++ E+V+L+AI+FGH+E K ++  I +L ++  KE + +       K+  E+
Sbjct: 184 MMVEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
                E L  +  I EK+ R + ID + ++ V++F S++    E   ++  V  DI  + 
Sbjct: 244 RAYAAERLMEAVKIAEKHARQEAIDAVNEETVAHFESQYIETPELLSDVSEVLYDIVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   KVR DGR  + +R I +   +L RTHGS LF RG TQA+ + TLG   D Q 
Sbjct: 304 VRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDVQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P   +FPYT
Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   +L+DI G 
Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QAK GRL IL++M + + + 
Sbjct: 484 EDHLGDMDFKVAGTAEGVTAIQMDIKINGIDRQILQDALKQAKEGRLFILSKMMEAIQKP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R QL  + P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++   
Sbjct: 544 REQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTNQEM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK  D
Sbjct: 604 NEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  GDT+ VK+ + D +G++ LS K V
Sbjct: 664 VIAIGDTITVKVTEIDQQGRVNLSRKAV 691


>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           A1055]
          Length = 712

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Ames]
 gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Sterne]
 gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Bacillus anthracis str. A2012]
 gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
 gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Australia 94]
 gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Ames]
 gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Sterne]
 gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
          Length = 712

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|262363252|gb|ACY59973.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004]
          Length = 664

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/648 (49%), Positives = 447/648 (68%), Gaps = 2/648 (0%)

Query: 43  TVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL 102
           TVV  +  K GQ FFPLTVNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPL
Sbjct: 2   TVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPL 61

Query: 103 FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV 162
           F   + NE QVI  V+  + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYV
Sbjct: 62  FPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYV 121

Query: 163 LNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           LNP  DE  +  LDL V+GT  AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L
Sbjct: 122 LNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINAL 181

Query: 222 AKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
                K      ++  ++ L   ++++ +  L  +  I EK  R  Q+D +K  +     
Sbjct: 182 VAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALL 241

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
           ++  + +  EI  +   ++  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+L
Sbjct: 242 AQDDTLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSAL 301

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQA+V  TLGT  D Q +D L G + + F++HYNF P   GE   +G+P RREIG
Sbjct: 302 FTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIG 361

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HGRLA+R +  V+P  ++FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VA
Sbjct: 362 HGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 421

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +A
Sbjct: 422 GIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVA 481

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  RLHIL  M + +S  R  + EF PR+  M I P++I++VIG GG VIR + ++
Sbjct: 482 LNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDE 541

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           TG  + I+DDGT+KIA++   + + A   I  IT   EV +IY G+V +++DFGAFV   
Sbjct: 542 TGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIG 601

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           G ++GLVHISQ++ +RV K +D ++ G  V VK+++ D +G+I+LS+K
Sbjct: 602 GGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIK 649


>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 735

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/685 (48%), Positives = 465/685 (67%), Gaps = 4/685 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E AGR   LETG++ARQ+  AV   YGETVVLATV   +  K+  DFFPLTVNY+ER 
Sbjct: 6   EFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNYEERL 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q++  V+  D + +P 
Sbjct: 65  YAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPE 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+  SA+L +S +PF GP+ G  V  ++GQ+V+NP +++ + S L L V+GT+DA++
Sbjct: 125 IAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAIV 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEEEMS 245
           MVE  ANQ+ E++VL+AI++GH   + + + I+  A K+  K+  V   K   +LE  + 
Sbjct: 185 MVEAGANQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELEAAVR 244

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + +  +   P+K  R + + +L  +++ +F  E     E +I  V   I  + VR 
Sbjct: 245 AYATDKVSAAVRNPDKLAREEALANLNAEVLEHFK-ETFPEKEADIAEVMHTILKERVRE 303

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L + +R DGR  + +R IS +VGLL RTHGS+LF RG TQA+ V TLG+  DEQ +D 
Sbjct: 304 AILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDG 363

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   + N +M HYNF P + GE   + APSRR+IGHG L  RA+ PV+P   +FPY +R+
Sbjct: 364 LELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRV 423

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEI ES+GS+S A++CGS++ALMDAGVPI  PVAGIAMGLVK+GD   ILSDI G EDH
Sbjct: 424 VSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSDIQGIEDH 483

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT+ G+TA+QMD+KI GI  +I+  AL+QA+ GR++IL++M + +SE R  
Sbjct: 484 LGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISEPRAD 543

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L +F PRV  + I PD+IR+VIG GG+VI  I+E+TG K++I+ DG V I S+   +   
Sbjct: 544 LSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAEQANR 603

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AREM+ +I    EV   Y G+V +V  FGAFV     ++GLVHISQL   RVAK  DV +
Sbjct: 604 AREMVENIVRDVEVGATYTGKVTRVEKFGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQ 663

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GDT+ VK+ + D++G+I LS K V
Sbjct: 664 VGDTLTVKVTEIDNQGRINLSRKEV 688


>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 712

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +    L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
 gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
          Length = 712

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMFGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE + +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKLAVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 735

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/685 (48%), Positives = 466/685 (68%), Gaps = 4/685 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E AGR   LETG++ARQ+  AV   YGETVVLATV   +  K+  DFFPLTVNY+ER 
Sbjct: 6   EFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNYEERL 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q++  V+  D + +P 
Sbjct: 65  YAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPE 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+  SA+L +S +PF GP+ G  V  ++GQ+V+NP +++ + S L L V+GT+DA++
Sbjct: 125 IAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAIV 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEEEMS 245
           MVE  ANQ+ E++VL+AI++GH   + + + I+  A K+  K+  V   K   +LE  + 
Sbjct: 185 MVEAGANQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELEAAVR 244

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           +   + +  +   P+K  R + + +L  +++ +F  E     E +I  V   I  + VR 
Sbjct: 245 EYATDKVSAAVRNPDKLAREEALANLNAEVLEHFK-ETFPEKEADIAEVMHTILKERVRE 303

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L + +R DGR  + +R IS +VGLL RTHGS+LF RG TQA+ V TLG+  DEQ +D 
Sbjct: 304 AILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDG 363

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   + N +M HYNF P + GE   + APSRR+IGHG L  RA+ PV+P   +FPY +R+
Sbjct: 364 LELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRV 423

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEI ES+GS+S A++CGS++ALMDAGVPI  PVAGIAMGLVK+GD   ILSDI G EDH
Sbjct: 424 VSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSDIQGIEDH 483

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT+ G+TA+QMD+KI GI  +I+  AL+QA+ GR++IL++M + +SE R  
Sbjct: 484 LGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISEPRAD 543

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L +F PRV  + I PD+IR+VIG GG+VI  I+E+TG K++I+ DG V I S+   +   
Sbjct: 544 LSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAEQANR 603

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AREM+ +I    EV   Y G+V +V  +GAFV     ++GLVHISQL   RVAK  DV +
Sbjct: 604 AREMVENIVRDVEVGATYTGKVTRVEKYGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQ 663

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GDT+ VK+ + D++G+I LS K V
Sbjct: 664 VGDTLTVKVTEIDNQGRINLSRKEV 688


>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264]
 gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
          Length = 712

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/685 (47%), Positives = 470/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ ++    +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEVDADILGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+ E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
           391-98]
          Length = 710

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  KD  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKD-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  I+G++++NP +++ + S + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH E K +I    ++ +   KE + +   +  ++LE+ + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKMEVKLYEVDAELEKAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++K+++++++  +       G++  +   I  + VR 
Sbjct: 249 MAEKDMHTAIQVHEKHAREDAINEVKQRVIAHYEEQEVEAEVLGQVSEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR S+ +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M  V++E R +
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L E+ P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S      E 
Sbjct: 549 LSEYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIDQQMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRIEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
 gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
          Length = 717

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M + D+  +  + EK+ R   I+ +KK+++ ++ ++    +  G++  +   I  + VR 
Sbjct: 249 MAETDMHSAIQVHEKHAREDAINVVKKRVIEHYEAQEVDADTLGQVSEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PVLP    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R++
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRIE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    E 
Sbjct: 549 LSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
 gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
          Length = 712

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSDKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum]
          Length = 713

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/690 (48%), Positives = 462/690 (66%), Gaps = 8/690 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE    G+ ++LETGR+A+Q+DG+V+     TVV+AT V  +  K G DF PLTV+YQER
Sbjct: 6   VEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQER 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGG+ +RE +P+E EIL SR+IDR +RPLF + +  +TQ+I +V+  D     
Sbjct: 66  AYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGIS 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++VA+SAAL +S +PF  PV   +V  ++G +++NP LDE ++ +LDL V+GT+DA+
Sbjct: 126 DVMAVVASSAALYVSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAGTRDAI 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIV-IDSKDFSKL 240
           +MVE + N++SE+  L AI   H    P+IEA  KL  M  KE    P V I  K    +
Sbjct: 186 MMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAVPIPPKVMDMV 245

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDI 298
           E   +  ++E L+++     +    + + D+++K++  FS+        E EI + F ++
Sbjct: 246 ESMGAPRLREALKIAVKQERQEQTAQILGDVREKILQEFSASSPEMIVEEREIFNAFHEL 305

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +++R ++LD KVR DGR    +R I+ +VG+L RTHGS+LF RG+TQ++ V TLGT +
Sbjct: 306 ERRIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSD 365

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G     FM+HYNF P + GE   M  P RREIGHG LA RA+ PVLP    
Sbjct: 366 DEQRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDS 425

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY++R+VS+I ES+GSSSMATVCG SLA+MDAG+PI   VAGIAMGL+K+GD   ILSD
Sbjct: 426 FPYSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAILSD 485

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKV GT++GITA+QMD+KI GI+  +M  +LQ+A+ GRL+I+ +M   
Sbjct: 486 ILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMRESLQKAREGRLYIMEKMKMA 545

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  SR  +  F PR+  + I  D+IR VIG GGKVIRGI E+TGAK+ IDD G ++IAS+
Sbjct: 546 LPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLIQIAST 605

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A +MI  I +  +V KIY G+V  V D+GAFV       GL HISQL   RV 
Sbjct: 606 DEVAAQKAIDMINQIVEEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQLEDRRVE 665

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K SDVV EGD + VK L+ D +GKI+LS K
Sbjct: 666 KVSDVVSEGDLILVKALEVDRQGKIRLSRK 695


>gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii
           RML369-C]
 gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
 gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii
           RML369-C]
 gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
          Length = 744

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/702 (45%), Positives = 477/702 (67%), Gaps = 5/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +EW G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  FFPLT
Sbjct: 1   MFNEIIKTVEWGGKTLELSTGKIARQADGAVTVKMGNSVLLCTAVTAAKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V   V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETFVTCTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++ L+P LD  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFFLHPTLDLLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L A+ FG +  +PV+  I +LA    K  + +     ++
Sbjct: 181 GTNDSVMMVESEAHLLSEEQMLAAVKFGFDSFQPVVNIIKELAAEAKKSKLEMQDLYPAE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L+ E+ ++  +++  +  I  K  R   ++ + +K++ +F+   E   +N  +I S  + 
Sbjct: 241 LKNEIKKLFAKEIEQTFAIKSKQERSTNLELIPEKVLKHFADDIESKKYNNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++ ++R  +L K  R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 VESDILRGNILQKNKRIDGRTTTDIRQITCEVGLLPCAHGSALFTRGETQSLVSSTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +DSL G  +  FM++Y F P +  E   M AP RRE+GHG+LA RA++PVLP   
Sbjct: 361 LDEQIIDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPGRREVGHGKLAWRAVNPVLPTKT 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+ + F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEDEKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G++  IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKIRGVNFEIMKIALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   ++ +  P    + +  D+IR++IG GGKVI+ I E +GAK++I DDGTV I +
Sbjct: 541 VISKPNNEMSKNAPSTTTLKVDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + +++I   PE+ +++ G V+K++D GAFV++ G +DG VHIS+++ ER+
Sbjct: 601 SDKDKLKVALDKVKAIAIEPEIGEVFNGTVMKILDSGAFVNYLGNKDGFVHISEIAEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
                V+K+GD V VKL+ FD++GK KL++K    D+++  P
Sbjct: 661 ESVGSVLKQGDIVKVKLIGFDNKGKAKLTIKNAEKDKSSANP 702


>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
          Length = 712

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ G  V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 704

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/694 (47%), Positives = 465/694 (67%), Gaps = 10/694 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V IE AGR L +ETGR+A+Q+ G+VL TYG++VVL T    R  K+  DF PLT+ YQER
Sbjct: 5   VSIELAGRKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREPKENIDFLPLTIEYQER 64

Query: 67  TYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
            YAVG+IPG + RRE  RPTENE L  R+IDR +RPLF++ Y++ETQ+I  V+  D E+ 
Sbjct: 65  FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQEND 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P +++M+ ASAAL +S +PF GP+ G +V  I+GQYVLNP  ++ + S LDL V+G++ A
Sbjct: 125 PDLMAMLGASAALSVSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSRLDLIVAGSEKA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243
           V+MVE  A+ LSE+ V + I F H   +P++    +L     K  + +  +   + L + 
Sbjct: 185 VVMVEGGADSLSEEEVKNGIFFAHESLQPLLAMQKELQAAAGKPKLEVKPRQVDEALRQR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED------ 297
           + ++   ++       +K  R +    L++K+++    E +     ++    ++      
Sbjct: 245 VQELAATEMAQVITTVDKQQRGEASAMLEEKVLAALEGELAEAAGEQLPVKLQEAKGLLK 304

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ K++R  +  +++R+D R  + VR+I+ +VG+L R HGSSLF RG+TQ +V  TLG+
Sbjct: 305 ELKKKMIRERITKERIRIDNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSATLGS 364

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ ++SLSG     FM+HYNF P   GEV  +  PSRR+IGHG LA RA+  VLP  
Sbjct: 365 GEDEQRIESLSGMSFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAVQAVLPDA 424

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ KPV+GIAMGL+K+GDD  IL
Sbjct: 425 ESFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGDDIAIL 484

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GITA+QMD+K+ G+S  IM  AL QA+ GRLHIL +M 
Sbjct: 485 SDILGDEDHLGDMDFKVAGTEDGITALQMDIKLEGVSREIMSAALNQAREGRLHILGKMK 544

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++  R  +    P++  + I PD+IR++IG GGKVI+ I  + G K+++ DDG VKI 
Sbjct: 545 EAIAAPRSDVPAHAPKMFSITINPDKIRDLIGPGGKVIKAITTEYGIKMDVSDDGKVKIF 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           + +    E  +E + SIT   EV K+YKG V KVMDFGAFV      DGLVHIS+L   R
Sbjct: 605 APTGEIAEKVKEEVLSITAEAEVGKVYKGVVQKVMDFGAFVQILPGTDGLVHISELEHHR 664

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K +DV+ EGD V VK+L+ D RGKI+LS K +
Sbjct: 665 VNKVTDVLNEGDEVMVKVLEIDPRGKIRLSRKAL 698


>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
 gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
          Length = 712

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 470/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M    RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGQGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+ E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           14579]
 gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           14579]
          Length = 712

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 470/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG +  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGAIGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+ E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+ +V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEAKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           10987]
 gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10987]
          Length = 712

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/685 (46%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQSVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
 gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
 gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
 gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
 gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 712

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/685 (46%), Positives = 472/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M  V++E R +
Sbjct: 489 LGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
           SC2]
 gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
           SC2]
          Length = 700

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/688 (47%), Positives = 459/688 (66%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE++  GR L LETGR+A+Q++ AV  +YGETVVL TV   R  KD  DFFPLTVNY+ER
Sbjct: 5   VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP++  IL SR+ DR IRPLF + ++N+ QV+  VM  D +  P
Sbjct: 64  LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            + +M+  SAAL +S +PF GP+ G  V  +NGQ+V+NP + +   S L L V+GT+DA+
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSDLYLVVAGTKDAI 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           +MVE E +++ E+V+L+AI+FGH+E K ++  I +L ++  KE + +       K+  E+
Sbjct: 184 MMVEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
                + L  +  I EK+ R + ID + ++ V++F +++    E   ++  V  DI  + 
Sbjct: 244 RAYAADRLVEAVKIAEKHARQEAIDAVNEETVAHFEAQYIETPELLSDVSEVLYDIVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   KVR DGR  + +R I +   +L RTHGS LF RG TQA+ V TLG   D Q 
Sbjct: 304 VRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P   +FPYT
Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   +L+DI G 
Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI  NI+  AL+QA+ GRL IL +M + + + 
Sbjct: 484 EDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRNILQDALKQAREGRLFILGKMMEAIQKP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R QL  + P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++   
Sbjct: 544 REQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTNQEM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK  D
Sbjct: 604 NEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  GDT+ VK+ + D +G++ LS K V
Sbjct: 664 VIAIGDTITVKVTEIDQQGRVNLSRKAV 691


>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
 gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
          Length = 712

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
           insecticola LSR1]
 gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
           insecticola LSR1]
          Length = 698

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/683 (48%), Positives = 460/683 (67%), Gaps = 2/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + +ETG +ARQ++ AV+ +  +T V  TVV  +  K GQ+FFPLTVNYQER+
Sbjct: 8   KFQYGQHTVTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKPGQNFFPLTVNYQERS 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LISR+IDR IRPLF   + NE Q+I  V+  + E +P 
Sbjct: 68  YAAGRIPGNFFRREGRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSINKEVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LS +PF GP+  A+V +IN QY+LNP   E  +  LDL V+GT  AVL
Sbjct: 128 IVAMIGASAALSLSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLDLVVAGTNAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE EA  LSE+ +L A+ FGH + + VI  I++L +   K       ++ + KL   +S
Sbjct: 188 MVESEAKMLSEEQMLGAVSFGHEQQQIVINNINELVEKAGKAKWDWCPEEVNQKLYTTVS 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ +  L  +  I EK  R  +I+ +K  +      ++   N  E+  +    + K+VR 
Sbjct: 248 ELAEAPLGDAYCIAEKQERYAKINVIKADITQTLLDKNEILNAAEVQDILSYTEKKLVRR 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L+ K R+D R  +T+R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D 
Sbjct: 308 RVLECKPRIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGTARDAQSLDE 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L G + + F++HYNF P + GE   +G+P RREIGHGRLA+RA+  V+P     PYT+RI
Sbjct: 368 LIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVMPSLDDCPYTVRI 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEITES+GSSSMA+VCG+SLALMDAGVPI + VAGIAMGLVK+GD+F++LSDI GDEDH
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKEHVAGIAMGLVKEGDNFVVLSDILGDEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG+ +GITA+QMD+KI GI+E IM  AL QAK    HIL+ M + + + R  
Sbjct: 488 LGDMDFKVAGSRTGITALQMDIKIEGITEKIMEKALHQAKSALSHILDIMEEAIKKPRSD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  + I PD+I++VIG GG VIR + E+T   + I+DDGT+KIA+    +I  
Sbjct: 548 ISQYAPRIHTIKINPDKIKDVIGKGGAVIRALTEETRTTIEIEDDGTIKIAAEDNEKIIY 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A   I+ IT  PE  KIY G+V ++ DFGAFV   G R+GLVHISQ++ +R+    D + 
Sbjct: 608 AIRRIQEITVDPEPGKIYLGKVTRITDFGAFVSCVGGREGLVHISQIAEKRIENIPDHLH 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  V VK+++ D +G+I+LSMK
Sbjct: 668 IGQEVQVKIIEIDRQGRIRLSMK 690


>gi|212639515|ref|YP_002316035.1| polynucleotide phosphorylase/polyadenylase [Anoxybacillus
           flavithermus WK1]
 gi|226702595|sp|B7GG69|PNP_ANOFW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212560995|gb|ACJ34050.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Anoxybacillus flavithermus WK1]
          Length = 702

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/689 (47%), Positives = 465/689 (67%), Gaps = 4/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGRPL +E G +A+Q++GAVL  YG+TVVL+T    +  K   DFFPLTVNY+
Sbjct: 6   HVFSIDWAGRPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKS-VDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF++ ++NE QV+  VM  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           SP + +M  +S AL +S +PFEGP+ G  V  ++G++V+NP + + +Q  + L V+GT+D
Sbjct: 125 SPEMAAMFGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPSVAQMEQSDMHLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242
           A+ MVE  AN++ E+V+L+AI+FGH E K +I     +A    KE + V+  +  ++LE 
Sbjct: 185 AINMVEAGANEVPEEVMLEAIMFGHEEIKRLIAFQEDIAAKVGKEKMEVVLYELNAELEA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAK 301
           E+   ++ +++ +  +PEK  R   I+ LK ++V+ Y   E       ++  +   +  +
Sbjct: 245 EIRARVEGEVKRAVQVPEKLAREAAIEQLKAEVVAAYEEQEADEETLKQVKEILYKLVKE 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ ++KVR DGR  + +R +S+ VGLL RTHGS LF RG TQA+ V TLG   D Q
Sbjct: 305 EVRRLITEEKVRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPY
Sbjct: 365 ILDGLGIEETKRFMHHYNFPPFSVGETGAMRGPGRREIGHGALGERALEPVIPSEKEFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + IL+DI G
Sbjct: 425 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTILTDIQG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQA++GRL IL  M + +SE
Sbjct: 485 MEDHLGDMDFKVAGTEKGVTALQMDIKIKGLSREILEEALQQARKGRLEILKHMMQTISE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S +  
Sbjct: 545 PRKELSPYAPKILTMQINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSVNEE 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K  
Sbjct: 605 MNKKAKKIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFSGKDGLVHISELAEERVGKVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVV  GD + VK+ + D +G++ LS K V
Sbjct: 665 DVVSIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ATCC 17978]
          Length = 662

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/643 (51%), Positives = 448/643 (69%), Gaps = 3/643 (0%)

Query: 53  GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ 112
           GQDFFPLTVNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE Q
Sbjct: 19  GQDFFPLTVNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQ 78

Query: 113 VIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQ 171
           V   V+  D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q
Sbjct: 79  VTATVVSSDKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQ 138

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI- 230
             LDL V+GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P  
Sbjct: 139 SDLDLVVAGTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSD 198

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEG 289
            +      +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        
Sbjct: 199 WVAPAHNEELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIAD 258

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E+  +FED++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+
Sbjct: 259 EVDYLFEDLKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQAL 318

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V  TLG   D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +
Sbjct: 319 VTTTLGNTRDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGV 378

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             VLP   +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+
Sbjct: 379 QAVLPAADRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKE 438

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+
Sbjct: 439 GERFAVLSDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRM 498

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HILNEM+KV+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D
Sbjct: 499 HILNEMNKVISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIED 558

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +GTV++   + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HI
Sbjct: 559 NGTVRVFGETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHI 618

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQ+S ER+A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 619 SQISNERIANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 661


>gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
 gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
          Length = 712

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 470/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +    L + + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVLNQAVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I  + VR 
Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTIGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R +
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    + 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMNDK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum
           'So ce 56']
 gi|187611292|sp|A9F8Z2|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum 'So ce 56']
          Length = 757

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/688 (47%), Positives = 462/688 (67%), Gaps = 17/688 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L LETGR+A+Q+ GAVL TYG+T+VL T V  +  + G DFFPLT  + E+TYA G
Sbjct: 10  GGRALTLETGRLAKQAHGAVLVTYGDTMVLVTAV-SQDERPGLDFFPLTCEFVEKTYAAG 68

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+ +RE+R  E EIL SR++DR +RPLF + +K +TQ+I  V+  D ++   V+++
Sbjct: 69  KIPGGFFKREARQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSSDKQNKADVLAL 128

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVEL 190
             ASAAL +S +P+ GPVVG +V  ++G++V  P + D ++  +DL V+ ++DA++MVE 
Sbjct: 129 TGASAALHISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDIDLVVACSRDAIVMVEG 188

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKDFSKLEEEM 244
            A + +E  ++DA++F H   +PVI+ I K+     K       P + D     +++  +
Sbjct: 189 GAAEATEAEIIDALMFAHETAQPVIDLIEKMRAAVGKPKREFVAPALPD-----EIKRRV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSVFEDIQA 300
           +Q++ EDL+ +  + +K  R      LKKK+    S+E  +      +G + + FE+ +A
Sbjct: 244 AQIVDEDLKAATKVTDKKARYDGYSSLKKKLTETLSAELGAEKLLPLQGLVKAEFEERKA 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVRT + ++  R+DGRD  ++R I  +VGLL R HGS+LF RG+TQAIV  TLGT  DE
Sbjct: 304 HVVRTYVTEEGRRIDGRDGRSIRPIMCEVGLLPRVHGSALFQRGETQAIVTTTLGTSTDE 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G     F +HYNF P +TGE   +  P RREIGHG LA RA+  ++P   QFP
Sbjct: 364 QKIDGLMGETWKRFYLHYNFPPFSTGETKPLRGPGRREIGHGALAERALSRMIPAPDQFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RIVSE  ES+GSSSMA VCG  L+LMDAGVPI  PVAGIAMGL+ +G+ + +LSDI 
Sbjct: 424 YTIRIVSETLESNGSSSMAAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGNKYAVLSDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT  G+TA+QMD+KI G+S  I+  AL QA+ GRLHIL +M + L 
Sbjct: 484 GDEDHLGDMDFKVCGTARGVTAIQMDIKIAGLSRQILAQALDQAREGRLHILGKMLETLP 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +R +L ++ PR+  + + PDQIR +IG GGK I+GIV+QTG  ++++DDGTV +AS+  
Sbjct: 544 TTRPELSQYAPRITTVRVKPDQIRLIIGPGGKTIKGIVDQTGVAIDVEDDGTVNVASADS 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A ++I+ +T  PEV   YKG V ++ DFGAFV      DGL+HIS+++  RV + 
Sbjct: 604 DAVKRALDIIKGLTAEPEVGATYKGTVKRITDFGAFVEILPNTDGLLHISEMAHTRVERV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            DVVKEGD++ VK+L  D  GKI+LS +
Sbjct: 664 EDVVKEGDSLDVKVLSVDREGKIRLSRR 691


>gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
           2912]
 gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
           2912]
          Length = 727

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/693 (47%), Positives = 462/693 (66%), Gaps = 10/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E    GR L LETG++A+Q+  AV   YG+TVVLATV   +  KD  DFFPLTVNY+
Sbjct: 3   HIFETVLGGRRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKD-LDFFPLTVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QV+  V+  D + 
Sbjct: 62  ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQDC 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +  M+  SAAL +S +PF+GP+ G  V  ++GQ+V+NP + + + S + L V+G++ 
Sbjct: 122 PPEIAGMIGTSAALTISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDMHLVVAGSRS 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           AV+MVE  AN++ E  +LDAI+FGH + +P+I+   ++ +   +E IV    +  + +EE
Sbjct: 182 AVVMVEAGANEVPESEMLDAIMFGHEQLQPLIDLQERMRQEIGQEKIV---PELHRPQEE 238

Query: 244 MSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + Q ++E     L+ +   PEK  R   I  ++++   +F+ E       +I  V  DI 
Sbjct: 239 IVQAVREFATEKLKTAIRTPEKLAREDAIRAVEEETQEHFA-EQFPEGAADIAEVLHDIL 297

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR+ +L++ +R DGR  + +R IS +VGLL RTHGS LF RG TQA+ V TLG   D
Sbjct: 298 KEEVRSAILNEGMRPDGRALDEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 357

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   + APSRR+IGHG L  RA+ PV+P   +F
Sbjct: 358 VQILDGLDLEESKRFMHHYNFPPFSVGEARPIRAPSRRDIGHGALGERALEPVIPSEEEF 417

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LALMDAGVPI  PVAG+AMGLVK+GD   IL+DI
Sbjct: 418 PYTIRLVSEVLESNGSTSQASICGSTLALMDAGVPIKAPVAGVAMGLVKEGDRVAILTDI 477

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT +G+TA+QMD+KI G++ +I+  AL+QA RGR+ IL +M +V+
Sbjct: 478 QGMEDHLGDMDFKVAGTAAGVTALQMDIKIKGLTRDILASALEQAHRGRMFILGKMLEVI 537

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R QL  + PR+  M I PD+IR VIG GG+VI  I++ TG K++I+ DG + IA+  
Sbjct: 538 QQPRQQLSPYAPRIITMRIHPDKIREVIGPGGRVINKIIDDTGVKIDIEQDGRIFIAAVD 597

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E AR+MI  I    EV   Y G+V +V  +GAFV     ++GLVHISQL+ ERV +
Sbjct: 598 QEAGERARKMIEGIVAEVEVGHTYHGRVTRVEKYGAFVEILPGKEGLVHISQLADERVGR 657

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           T DVV+ GD + VK+ + D +G+I LS + V Q
Sbjct: 658 TEDVVRVGDEIDVKVTEIDSQGRINLSRREVLQ 690


>gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
 gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
          Length = 698

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/693 (47%), Positives = 457/693 (65%), Gaps = 15/693 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE+   GR L LETGR+A+Q++ AV   YG+TVVL TV      KD  DFFPLTVNY+ER
Sbjct: 4   VEMLLGGRTLVLETGRLAKQANAAVTVRYGDTVVLCTVTASAEPKD-LDFFPLTVNYEER 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV   VM  D   +P
Sbjct: 63  LYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQNCTP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDA 184
            + +M+  SAAL +S +PF GP+ G  V  +NGQ+++NP + E +   ++FV+  GT+DA
Sbjct: 123 EIAAMIGTSAALSISDVPFNGPIGGVNVGRVNGQFIINPTV-EQEAETEIFVTVAGTKDA 181

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSK 239
           ++MVE E N+++EDV+L+AI+FGH+E K ++  I +L     K  +      ++++  + 
Sbjct: 182 IMMVEAEGNEVAEDVMLEAIMFGHDEIKKIVAMIEELQAAAGKPKMEVKLHAVNAEVNAA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFED 297
           +    S  + E +R    IPEK+ R   ID +    V++F   ++   E   ++  V  D
Sbjct: 242 VRAFASDKLVEAIR----IPEKHARQDAIDAVNGDTVAHFEEVYAETPELLADVKEVLYD 297

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  + VR ++   KVR DGR  E +R I   V LL RTHGS LF RG TQA+ + TLG  
Sbjct: 298 IVKEEVRRLITHDKVRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGAL 357

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D +S  +   FM HYNF P + GE   +  P RREIGHG L  RA+  V+P   
Sbjct: 358 GDVQILDGISPEETKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIPSET 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+KDGD F ILS
Sbjct: 418 EFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDHFSILS 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QA+ GR+HIL +M+ 
Sbjct: 478 DIQGMEDHLGDMDFKVAGTAQGVTAIQMDIKINGIDRAILSQALEQARIGRMHILGKMTA 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+SR  L ++ P++  + I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS
Sbjct: 538 VMSQSRSSLSQYAPKILTLRINPDKIRDVIGSGGKIINKIIEETGVKIDIEQDGMVFIAS 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S+    + A+ +I  I     + ++Y G V ++  FGAFV     +DGLVHISQLSTERV
Sbjct: 598 SNEEMNQKAKAIIEGIVKEVVIGEVYLGTVKRIEKFGAFVEILPNKDGLVHISQLSTERV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AK  DVV  GD + VK+ + D +G+I LS K V
Sbjct: 658 AKVEDVVAIGDQITVKVTEIDQQGRINLSRKAV 690


>gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp.
           Fw109-5]
 gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 722

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/683 (47%), Positives = 460/683 (67%), Gaps = 12/683 (1%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           LETG++A+Q+ G+V    G+++VL TVV     K+G DFFPLTV+YQE+ +A G++PG +
Sbjct: 17  LETGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEKLFAAGRVPGSF 76

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            RRE RPTE E L SR++DRS RPLF++ Y NETQ+I  V+  D E+   V+++  ASAA
Sbjct: 77  FRREGRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDTDVLALTGASAA 136

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLS 196
           L LS +PF GP+ G +V  +NGQ+V NP L +  +  LD+ ++ ++DA++MVE  A ++S
Sbjct: 137 LHLSDIPFNGPIAGVRVGRVNGQFVANPTLAQRAEADLDVIMAASRDAIVMVEGGAKEVS 196

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQMIKEDLRV 254
           E V++DA++FG    + +++A   L K    +P       K+   L E++  +  E ++ 
Sbjct: 197 EQVMVDALLFGQAAVRELLDAQDALRKATGDKPRRAFDPPKNDVALREKVKALTWEKVKE 256

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQAKVVRT 305
           +    EK+ R  ++ ++KK+++     E +         +  E EI   +ED++ + +R 
Sbjct: 257 AYARNEKHDRYGRLSEIKKELLQALKEEAAGDAQKLAAIALREKEIKGYYEDVKYEYMRK 316

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D++ R+ GR    +R I+++VGLL R HGSSLF RG+TQA+V  TLGT EDEQ V+ 
Sbjct: 317 MITDERRRIGGRGEADIRKITSEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEM 376

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P   +FPYT+RI
Sbjct: 377 LTGMVFKRFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRQVMPPEDKFPYTVRI 436

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   ILSDI GDEDH
Sbjct: 437 VSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDILGDEDH 496

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKV GT  GIT++QMD+KIGG++  I+  AL QA  GR HIL EM+K ++  R  
Sbjct: 497 LGDMDFKVCGTAEGITSIQMDIKIGGVTREILERALAQAADGRKHILGEMAKAIATPRES 556

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V IAS S  ++EA
Sbjct: 557 ISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPSQDKVEA 616

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +MIRS+T   E+ K Y G V K+ +FGAFV      DGL+HIS+LS +RV   SDV+ 
Sbjct: 617 AIKMIRSLTQEAEIGKTYLGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSVSDVLS 676

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
           EG+ V VK++  D  GKI+LS K
Sbjct: 677 EGEEVLVKVISVDRAGKIRLSRK 699


>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 710

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/694 (45%), Positives = 483/694 (69%), Gaps = 12/694 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE+E  G+ L L+TG  A+Q++G+VLA YG+T VL TVV +++ K+G DF PLT++YQE+
Sbjct: 3   VELEIKGKKLVLQTGIFAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            Y+ GKIPGG+ +RE +PT+ EIL+SR+IDR +RPLF   +  ETQ I +V+ +  E+  
Sbjct: 63  AYSAGKIPGGFFKREGKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDENIA 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            ++S++  S+AL +S +PF GPV   +V  +  +++LNP  DE + S L+L V+GT++AV
Sbjct: 123 DILSIIGISSALTISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSILNLVVAGTEEAV 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244
            MVE  A + SE+ +++A+ F H   K +I    KL ++  K +  +I      ++++ +
Sbjct: 183 TMVEGGAAECSEETLVEALKFAHTHIKKIIALQKKLQQLSGKPKREIISLNGDEEIQKAI 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE------HSSWNEG---EIVSVF 295
             +I   +  + F+P+K  R + +D+L  + +   ++E      + ++++    EI + F
Sbjct: 243 LNIIGGKIENALFLPKKVERQQALDELLNECLQNLNTEEFRQKLYGNFDKDISLEITNAF 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +  K +R  ++ K +R DGR S+ +R I+  +G+L R HGS+LF RG+TQA+V  TLG
Sbjct: 303 DKVIKKFMRESIVKKGIRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ VDSL G     FM+HYNFLP + GEV  + AP RREIGHG LA RA+  V+P 
Sbjct: 363 TSEDEQKVDSLEGEIFKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYLAERALSYVIPS 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VS+I ES+GSSSMATVCG++L+LMDAGVPI  PVAG+AMGL+K+GD  ++
Sbjct: 423 KDEFPYTIRVVSDILESNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKEGDKTVV 482

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT+ GITA QMD+KI GIS  I   AL+QAK+ RL IL +M
Sbjct: 483 LTDILGMEDHYGDMDFKVAGTEKGITAFQMDVKISGISYEIFKKALKQAKQARLFILKKM 542

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVK 594
           ++ +SE + +L  + PR+  + + P++IR++IG GGKVI+GI+E+TG K++I+D +G VK
Sbjct: 543 AETISEPKKELSLYAPRIYKIQVKPEKIRDIIGTGGKVIKGIIEETGVKIDIEDKEGIVK 602

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IASS+ +  + A E+I+ IT   E+ +IY G+V +++DFGAFV      +GL+HISQ++ 
Sbjct: 603 IASSNESAAQKAIEIIKGITQEAELGRIYMGKVTRIVDFGAFVEIMPGVEGLLHISQIAD 662

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +R+ K S+V+K G+ + VK+++ D+ G+++LS K
Sbjct: 663 KRIQKVSEVLKTGEQIPVKVIEIDELGRVRLSRK 696


>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 705

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/692 (47%), Positives = 464/692 (67%), Gaps = 10/692 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  I+ Q+++NP +D+ ++  ++L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           A+ MVE  A+++ E+ +L+AI+FGH E K +I    ++     KE   I      +++EE
Sbjct: 185 AINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIA---LYEIDEE 241

Query: 244 MSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
           +S  +K    EDL  +  + EK+ R   I+++K  +V+ F   EH      ++  +   +
Sbjct: 242 LSDKVKALAEEDLLKAIQVHEKHAREDAINEVKNTVVAKFEDEEHDEDTIKQVKQILSKL 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   
Sbjct: 302 VKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALG 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    
Sbjct: 362 DVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKD 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+D
Sbjct: 422 FPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTD 481

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGTD G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   
Sbjct: 482 IQGMEDALGDMDFKVAGTDKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLAT 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           LSESR +L ++ P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S+
Sbjct: 542 LSESRKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISST 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV 
Sbjct: 602 DESSNQKAQKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVG 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DVVK GD + VK+ + D +G++ LS K V
Sbjct: 662 KVEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|241116894|ref|XP_002401660.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
 gi|215493204|gb|EEC02845.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
          Length = 670

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/669 (47%), Positives = 466/669 (69%), Gaps = 3/669 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ L+L TG+IARQ+DGAV    G +V+L T V  +  K+G  FFPLT+NY+E  YA GK
Sbjct: 2   GKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAAGK 61

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +D E+   +++++
Sbjct: 62  IPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAII 121

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
            ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+GT D+V+MVE E
Sbjct: 122 GASAALSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVAGTSDSVMMVESE 181

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           A+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + +     + L++E+ ++  ++
Sbjct: 182 AHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPASLKKEIEKLFVKE 241

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           ++    I  K  R   +D + +K++++F S  E+  ++  +I S  + I++ ++R  +L+
Sbjct: 242 IKQVFVIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKSIESDILRNEILE 301

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT  DEQ VDSL G 
Sbjct: 302 KNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGE 361

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +  FM++Y F P +  EV  M APSRRE+GHG+LA RAI+P+LP   QFPY++R+V+E 
Sbjct: 362 YKERFMLNYIFPPYSVNEVMPMKAPSRREVGHGKLAWRAINPILPNKVQFPYSIRVVAET 421

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           TES+GSSSMATVC SSLALM AGVPI  PVAGIAMGL+K+G  F +LSDI GDED+ G M
Sbjct: 422 TESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLSDILGDEDYFGDM 481

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+KV+S+   +L + 
Sbjct: 482 DFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKVISKPNSELSKN 541

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P    + I  D+IR++IG GGKVI+ I E +GAK++I DDG+V + +S   +++ A + 
Sbjct: 542 APSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYASDRDKLKVALDK 601

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+   S V+K+GD 
Sbjct: 602 IKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERIETVSSVLKQGDI 661

Query: 670 VWVKLLDFD 678
           V VKL+ FD
Sbjct: 662 VKVKLIGFD 670


>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
 gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
          Length = 722

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 469/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGRPL +ETG +A+Q++GA L  YG+TVVL+T    R  KD  DFFPLTVNY+ER Y
Sbjct: 10  IDVAGRPLVIETGELAKQANGAALVRYGDTVVLSTATASREAKD-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF++ ++NE QV+  VM  D + SP V
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEV 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +++ +S AL +S +PFEGP+ G  V  I+GQ+V+NP +++ ++  + L V+GT+DA+ M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDMHLIVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + V+  +   +LE E+ Q
Sbjct: 189 VEAGADEVPEEVMLEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPELEAEIRQ 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           + + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   +  + VR 
Sbjct: 249 LAEADIKKAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPYT+R+
Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNEDHYTILTDIQGIEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G++ +I+  ALQQA++GRL IL+ M + LSE R +
Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTRDILEEALQQARKGRLEILDHMMQTLSEPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S      + 
Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEEANQK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K  D+V 
Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERIGKVEDIVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+ + D +G++ LS K V
Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
           curdlanolyticus YK9]
 gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
           curdlanolyticus YK9]
          Length = 701

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/696 (47%), Positives = 463/696 (66%), Gaps = 15/696 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  VE+   GRPL LETGR+A+Q++ AV   YGETVVL TV      KD  DFFPLTVNY
Sbjct: 2   LQKVELTLGGRPLVLETGRLAKQANAAVTVRYGETVVLCTVTASSEPKD-LDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF   ++N+ Q++  VM  D +
Sbjct: 61  EEKLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPDGFRNDVQIVNLVMSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFV--SGT 181
            SP + +M+  SAAL +S +PF GP+ G  V  I+GQ+V+NP ++++  S D+FV  +GT
Sbjct: 121 CSPEIAAMIGTSAALSISDVPFNGPIGGVVVGRIDGQFVINPTVEQEAQS-DIFVVVAGT 179

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKD 236
           +DA++MVE EA+++ E V+L+AI+FGH+E K ++++I +   +  K  +      +D + 
Sbjct: 180 KDAIMMVEAEADEVPESVMLEAIMFGHDEIKNIVKSIEEFQSIAGKTKMEVKLHAVDEQV 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSV 294
            + +    S+ + + +R++    EK+ R   ID +  + V++F+  ++   E   ++  V
Sbjct: 240 NADVRAYASERLTQAIRIA----EKHARQDAIDAINVETVAHFNEIYAETPELMDDVKEV 295

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             DI  + VR ++   KVR DGR    +R I   V LL RTHGS LF RG TQA+ + TL
Sbjct: 296 LYDIVKEEVRRLITHDKVRPDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALSICTL 355

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D Q +D +S  +   FM HYNF P + GE   +  P RREIGHG L  RA+  V+P
Sbjct: 356 GALGDVQILDGISPEESKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIP 415

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
             ++FPYT+R+VSE  ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+KDG+ F 
Sbjct: 416 PESEFPYTIRLVSECLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGEHFS 475

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QAK GR+HIL +
Sbjct: 476 ILSDIQGMEDHLGDMDFKVAGTAEGVTAIQMDIKIEGIDRAILTQALEQAKEGRMHILGK 535

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M +V+ E R  L ++ P++  + I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V 
Sbjct: 536 MLEVMGEPRKNLSKYAPKIMTLRINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGMVY 595

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IASS+    + AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQ+ST
Sbjct: 596 IASSNEEMNQKARAIIEGIVKEVVVGEIYLGTVKRIEKFGAFVEILPNKDGLVHISQVST 655

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ER+AK  DV+K GD + VK+ + D +G+I LS K V
Sbjct: 656 ERIAKIEDVLKIGDQITVKVTEIDQQGRINLSRKAV 691


>gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
 gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
          Length = 689

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/687 (46%), Positives = 464/687 (67%), Gaps = 7/687 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGRPL +E G++A+Q++GAVL  YG+TVVL T       ++G DFFPLTV+Y+E+ 
Sbjct: 5   EMELAGRPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKM 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+++RE RP+ + IL +R+IDR IRPLF K ++N+ Q++  V+  + +++P 
Sbjct: 65  YAAGKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPE 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           + +M+ AS AL +S +PF GP+ G +V  +N ++V+NP  ++ +  +L+L V+G+ DAV+
Sbjct: 125 LAAMIGASCALTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSHDAVM 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF---SKLEEE 243
           MVE  AN+L EDV+LDAI+FGH E K ++E    +   C KE    + K F    ++EE 
Sbjct: 185 MVEAGANELPEDVILDAILFGHEEIKRLVEFQQGIQADCGKEKS--EPKLFLVPHEMEEA 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +    K+ L  +   P+K  R   I ++    + +F   +   ++ EI     D++  VV
Sbjct: 243 IRDYAKDRLDAAVRNPDKLDRDAHIAEVTTDTMEHFLELYPEMDK-EIAIAIHDLEKSVV 301

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++  +K+R DGR+ E VR +S +VGLL RTHGS LF RG TQ + V TLG+  DEQ +
Sbjct: 302 RHMITHEKIRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVI 361

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ PV+P   +FPYT+
Sbjct: 362 DGLGPETTKHYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSIEEFPYTI 421

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+ ES+GSSSM +VCGS+L+LM+AGVPI +PV+G+AMGLVK+GD + IL+DI G E
Sbjct: 422 RLVSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKEGDQYTILTDIQGME 481

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+K+ G+S  I+  ALQQAKRGR  IL +M + + +  
Sbjct: 482 DALGDMDFKVAGTTEGITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLECIDKPA 541

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + PRVE + I  D+IR+VIG GGKV++ I+++TG  ++I +DG + I S+    +
Sbjct: 542 AELSPYAPRVETIKIKVDKIRDVIGSGGKVVKKIIDETGVDIDIHEDGNIFITSNDAEGM 601

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A++MI  I    EV +IY G+V ++M FGAFV     ++GL HISQL+  RV K  DV
Sbjct: 602 KKAKQMIEDIVREVEVGEIYTGRVTRLMKFGAFVEVLPGKEGLCHISQLAKHRVEKVEDV 661

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD + VK+++ DD+G+I LS K V
Sbjct: 662 VQVGDQLQVKVVEIDDKGRINLSHKAV 688


>gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
           V453]
 gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
           V453]
          Length = 701

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/688 (47%), Positives = 449/688 (65%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE++  GRPL  ETGR+A+Q++ AV+  YGET VL TV      KD  DFFPLTVNY+ER
Sbjct: 5   VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYEER 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV+  VM  D +  P
Sbjct: 64  LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            + +M+  SAAL +S +PF GP+ G  V  ++G +V+NP + + + S + L VSGT+DA+
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDIYLVVSGTKDAI 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           +MVE EAN++ E+V+L+AI+FGH E K ++  I +L   C KE + +     ++ +  E+
Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNEAVNREV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
                  L  +  I EK+ R   ID + ++  + F  ++    E   ++  V  DI  + 
Sbjct: 244 RDFAAARLVEAVRIEEKHARQDAIDAINEEAYTVFEEKYIETPELLKDVKEVLHDIVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   KVR DGR    +R I     LL RTHGS LF RG TQA+ V TLG   D Q 
Sbjct: 304 VRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P   +FPYT
Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   IL+DI G 
Sbjct: 424 IRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  ALQQAK GR+HIL +M++ + + 
Sbjct: 484 EDHLGDMDFKVAGTPEGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQQP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L ++ P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++   
Sbjct: 544 RTSLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASANDEM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK  D
Sbjct: 604 NKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GD + VK+ + D +G+I LS K V
Sbjct: 664 VVAIGDVITVKVTEIDQQGRINLSRKAV 691


>gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
           Y412MC10]
 gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
           Y412MC10]
          Length = 701

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/688 (47%), Positives = 449/688 (65%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE++  GRPL  ETGR+A+Q++ AV+  YGET VL TV      KD  DFFPLTVNY+ER
Sbjct: 5   VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYEER 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV+  VM  D +  P
Sbjct: 64  LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            + +M+  SAAL +S +PF GP+ G  V  ++G +V+NP + E + S + L V+GT+DA+
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTKDAI 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           +MVE EAN++ E+V+L+AI+FGH E K ++  I +L   C KE + +     ++ +  E+
Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNREV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
            +  +  L  +  I EK+ R   ID +  +  + F  ++    E   ++  V  DI  + 
Sbjct: 244 REFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   KVR DGR    +R I     LL RTHGS LF RG TQA+ V TLG   D Q 
Sbjct: 304 VRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P    FPYT
Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   IL+DI G 
Sbjct: 424 IRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  ALQQAK GR+HIL +M++ + + 
Sbjct: 484 EDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQKP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L ++ P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+   
Sbjct: 544 RETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSNDEM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK  D
Sbjct: 604 NKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GD + VK+ + D +G+I LS K V
Sbjct: 664 VVAIGDVITVKVTEIDQQGRINLSRKAV 691


>gi|116515160|ref|YP_802789.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|122285444|sp|Q057K3|PNP_BUCCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116257014|gb|ABJ90696.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 693

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/686 (46%), Positives = 474/686 (69%), Gaps = 7/686 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG IARQ+  +VLA+  +T VL T+V D +   GQ FFPL VNYQERT
Sbjct: 8   KFKYGKHNIILETGVIARQATASVLASMDDTTVLITIVSDNTTIPGQKFFPLVVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+ RRE RP+ENEILISR+IDR IRPLF K +  E Q+I  V+  + + +P 
Sbjct: 68  YAAGRIPGGFFRREGRPSENEILISRLIDRPIRPLFPKDFLYEVQIIATVISVNPQINPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           ++S++ +SAAL LSGLPF GP+  A++ ++N +Y+LNP +++  + SLDL VSGT++ + 
Sbjct: 128 IISIIGSSAALCLSGLPFLGPIGAARIGFLNNKYILNPSIEKIKKSSLDLVVSGTKNTIF 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM-- 244
           MVE EA+ LSED +L+AI+FGH   + +I+ I   +    K P +   K+  K ++++  
Sbjct: 188 MVEAEASILSEDNILNAILFGHESQQSLIDNIYLFSDKANKIPNI--YKNIYKPDKQIFN 245

Query: 245 --SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
             S+ IK+D+  + +I +K  R K+++D+K+K+ S   +  S     +I      ++  +
Sbjct: 246 LISKKIKKDINKAYYILKKKERLKKLNDIKQKVTSELLNNDSQLTSSKIEESIYFLERNI 305

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L  K+R+DGR +  VR I  + G+L R HGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 306 VRKRILKGKLRIDGRINNEVRKIDVRTGILPRVHGSALFTRGETQALVSATLGTSRDAQN 365

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L G + ++F+ HYNF P + GE+  +G+P RREIGHG+LA+R+   V+P    FPYT
Sbjct: 366 LDDLLGDRTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGKLAKRSFLAVMPNIEDFPYT 425

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   +AGIAMGL+K+ D +IILSDI GD
Sbjct: 426 IRLVSEITESNGSSSMASVCGASLALMDAGVPIKSAIAGIAMGLIKENDSYIILSDILGD 485

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED+LG MDFKV+G+  GITA+QMD+K+ GI+ +I+  AL QAK  RL IL+ M   L   
Sbjct: 486 EDYLGDMDFKVSGSRLGITALQMDIKVSGITSDIIRSALYQAKSARLKILDIMENTLQIP 545

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  + +F PR+  + I P++I++VIG GG +IR + E+TG  + I DDG VKI++ +  +
Sbjct: 546 RSDISKFAPRIYTIKINPEKIKDVIGKGGSIIRMLTEETGTVIEIKDDGIVKISAINGEK 605

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A + I+ IT+  ++ KIY G+V +++DFGAFV     ++GL+HISQ+S +R+ K  +
Sbjct: 606 AKYAIKRIQEITEDIQIGKIYSGKVTRILDFGAFVSIGFGKEGLIHISQISNKRIDKVIN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +K    ++VK+L+ D +G+I+LSMK
Sbjct: 666 HLKINQIIFVKVLEVDRQGRIRLSMK 691


>gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
 gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
          Length = 701

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/688 (47%), Positives = 449/688 (65%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE++  GRPL  ETGR+A+Q++ AV+  YGET VL TV      KD  DFFPLTVNY+ER
Sbjct: 5   VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYEER 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV+  VM  D +  P
Sbjct: 64  LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            + +M+  SAAL +S +PF GP+ G  V  ++G +V+NP + E + S + L V+GT+DA+
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTRDAI 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           +MVE EAN++ E+V+L+AI+FGH E K ++  I +L   C KE + +     ++ +  E+
Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNREV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
            +  +  L  +  I EK+ R   ID +  +  + F  ++    E   ++  V  DI  + 
Sbjct: 244 REFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   KVR DGR    +R I     LL RTHGS LF RG TQA+ V TLG   D Q 
Sbjct: 304 VRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P    FPYT
Sbjct: 364 LDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   IL+DI G 
Sbjct: 424 IRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  ALQQAK GR+HIL +M++ + + 
Sbjct: 484 EDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQKP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L ++ P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+   
Sbjct: 544 RETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSNDEM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK  D
Sbjct: 604 NKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GD + VK+ + D +G+I LS K V
Sbjct: 664 VVAIGDVITVKVTEIDQQGRINLSRKAV 691


>gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
 gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
          Length = 712

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/685 (45%), Positives = 466/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+WAGRPL +E G +A+Q++GAVL  YG+TVVL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLFS+ ++NE Q++  VM  D + SP +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ +S AL +S +PFEGP+ G  V  ++G++V+NP +++ + S + L V+GT+DA+ M
Sbjct: 129 AALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+++ E+++L+AI+FGH + K +I    ++A    KE + +   +   +LE E+ Q
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAEIRQ 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           + + D++ +  +PEK  R   I+++K  +++ Y   E       ++  +   +  + VR 
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEILHKLVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D Q +D 
Sbjct: 309 LITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPYT+R+
Sbjct: 369 LGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GR+ IL+ M + + E R +
Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTIREPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++  M I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S + A  E 
Sbjct: 549 LSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVNEAMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV +  DVV 
Sbjct: 609 AKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS K V
Sbjct: 669 IGDEILVKVMEIDKQGRVNLSRKAV 693


>gi|218782571|ref|YP_002433889.1| polynucleotide phosphorylase/polyadenylase [Desulfatibacillum
           alkenivorans AK-01]
 gi|257096685|sp|B8FCZ0|PNP_DESAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218763955|gb|ACL06421.1| Polyribonucleotide nucleotidyltransferase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 712

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/700 (48%), Positives = 476/700 (68%), Gaps = 15/700 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T+E     +PL+++TG++A+Q+ G+V+ +YGET+ L TVV  + L+ G DF PL+V YQE
Sbjct: 4   TLERNLGDKPLRIQTGKLAKQASGSVVVSYGETITLVTVVGSQELRPGIDFVPLSVEYQE 63

Query: 66  RTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           + YA G+IPG Y RRE  RP+E E L +R+IDR IRPLF K ++ ETQVI  V+  D E+
Sbjct: 64  KVYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFPKTWRYETQVIATVLSMDQEN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P ++SMV ASAAL +S LPF  P+   +V  I+G+ V NP + + +   L++ V+G++D
Sbjct: 124 DPDMLSMVGASAALCISDLPFFTPIACVRVGRIDGELVANPTISQQENCDLNIIVAGSRD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFS 238
            V+MVE     +SE+ +LDAI FG    +P++E   +L +       + +P+  D    +
Sbjct: 184 GVVMVEGGGQFISEEEMLDAIYFGQESLEPLLEMQEELMEKAGVPKRSADPVEKDEYLAA 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           K+ E     IK+ L ++    +K  R   I D+KK ++     E+   + G+ VS F   
Sbjct: 244 KVAELADPEIKKALEIN----DKLERQDAIRDVKKTVMEGLGEEYE--DRGKEVSEFIHD 297

Query: 299 QAKVV-RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           + +V+ R ++LD+  R+ GR  + VR I+ +VG+L RTHGS+LF RG+TQ++ ++TLG+ 
Sbjct: 298 RTRVIMRAMVLDEGRRIGGRRFDEVRPITCEVGILPRTHGSALFTRGETQSLGILTLGSS 357

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ V++L G +   FM+HYNF P +  EV R+  PSRR+IGHG L+ RAI  VLP   
Sbjct: 358 GDEQRVETLYGDETRPFMLHYNFPPYSVREVKRISGPSRRDIGHGGLSTRAIKEVLPSKE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+RIVSEI ES+GSSSMATVC +SLALMD GVPI+ PV+GIAMGL+ +GD  ++LS
Sbjct: 418 DFDYTIRIVSEILESNGSSSMATVCSASLALMDGGVPITNPVSGIAMGLMAEGDKIVVLS 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDH+G MDFKVAGT  GIT++QMD+KI  ++  IM  AL QA+ GRLHIL +M  
Sbjct: 478 DILGDEDHMGDMDFKVAGTKDGITSVQMDIKISSLTREIMEKALAQARVGRLHILEKMLT 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SESR ++  + P+V  + I PD+IR++IG GGKVIR I  +TG +V++DD G VK+++
Sbjct: 538 TISESREEMSPYAPKVFTIQIHPDKIRDIIGPGGKVIRAIQAETGTRVDVDDSGLVKVSA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +L E EAA +MI+ IT VPEV  +Y+G VVK+MDFGAFV      +GL HISQL T+ V
Sbjct: 598 VNLEEGEAALQMIKDITAVPEVGAVYEGTVVKIMDFGAFVAILPGTEGLCHISQLDTKHV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696
            K SDVVKEG+ + VK+L+    GKI+LS K ++++  GK
Sbjct: 658 KKVSDVVKEGEKIKVKVLELTKDGKIRLSRKALLEEENGK 697


>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
 gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
          Length = 717

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 319/685 (46%), Positives = 471/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  I+G++V+NP +++ + S + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+ +L+AI+FGH+E K ++    ++ +   KE   +   +  + LE+ + +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDADLEQAVRK 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R + I+++K+++++++  +       G++  +   I  + VR 
Sbjct: 249 MAEKDMHAAIQVHEKHAREEAINEVKQRVIAHYEEQEVEAEVLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR S+ VR ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT +G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M   ++E R +
Sbjct: 489 LGDMDFKVAGTANGVTALQMDIKIDGLSREILEEALQQAKIGRMHILDHMLTAIAEPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S      E 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVDQEMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRIEKFGAFVGLFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase;
           AltName: Full=Vegetative protein 15; Short=VEG15
 gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
 gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1589234|prf||2210369A polynucleotide phosphorylase
          Length = 705

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 322/689 (46%), Positives = 461/689 (66%), Gaps = 4/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D   
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  I+ Q+++NP +D+ ++  ++L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I   +   +L E
Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNE 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAK 301
           ++  + +EDL  +  + EK+ R   I+++K  +V+ F   EH      ++  +   +   
Sbjct: 245 KVKALAEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKLVKN 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D Q
Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPY
Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI G
Sbjct: 425 TVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDIQG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   LSE
Sbjct: 485 MEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S+  +
Sbjct: 545 SRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDES 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K  
Sbjct: 605 GNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+ + D +G++ LS K V
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
 gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
          Length = 717

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/685 (46%), Positives = 470/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S AL +S +PFEGP+ GA V  I+G++++NP +++ + S + L V+GT+DA+ M
Sbjct: 129 AAMLGSSLALSISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+Q+ E+++L+AI+FGH+E K ++    ++ +   KE   +   +  + + +++ +
Sbjct: 189 VEAGADQVPEEIMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDATINQDVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDIQAKVVRT 305
           M ++D+  +  + EK+ R   I+++KK+++ ++ ++E      G++  +   I  + VR 
Sbjct: 249 MAEKDMHAAIQVHEKHAREDAINEVKKRVIEHYEANEADGETLGQVNEILYKIVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R+
Sbjct: 369 LGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M   ++E R +
Sbjct: 489 LGDMDFKVAGTAQGVTALQMDIKIAGLSREILEEALQQAKVGRMHILDHMLSAIAEPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S      E 
Sbjct: 549 LSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIDQEMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVVK
Sbjct: 609 AKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVGLFSGKDGLVHISELALERVGKVEDVVK 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS KV+
Sbjct: 669 IGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 702

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 325/688 (47%), Positives = 458/688 (66%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++  GRPL LETGR+A+Q++ AV+  YG+T VL TV      KD  DFFPLTVNY+E+
Sbjct: 5   VRMDLGGRPLILETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKD-LDFFPLTVNYEEK 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ Q++  VM  D +  P
Sbjct: 64  LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIVNLVMSVDQDCEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            + SM+  SAAL +S +PF GP+ G  V  +NG++V+NP + + + S + + V+GT+DA+
Sbjct: 124 EIASMIGTSAALSISDVPFNGPIGGVAVGRVNGEFVINPDVAQQEASDIYVVVAGTKDAI 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           +MVE EAN++ E+V+L+AI+FGH E K ++  I  L K+  KE + +     ++ +  E+
Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAVIEDLVKVAGKEKMQVQLHTVNEEVNREV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
               ++ L  +  I EK+ R   ID +  + V++F  ++    E   ++  V  DI  + 
Sbjct: 244 RAYAQDRLIEAVKIAEKHARQDAIDAINDETVAHFEEKYIETPELLADVKEVLHDIVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++  +KVR DGR  + +R I   + LL RTHGS LF RG TQA+ + TLG   D Q 
Sbjct: 304 VRRLITHEKVRPDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P  ++FPYT
Sbjct: 364 LDGIDLEESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPPESEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDG+   IL+DI G 
Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QA+ GRL IL++M + + + 
Sbjct: 484 EDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRQILSDALKQAREGRLFILSKMMERIQKP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  L  + P++ IM I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++   
Sbjct: 544 KEHLSPYAPKITIMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVYIASTNEEM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
              AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK  D
Sbjct: 604 NNKARSIIEGIVKEVVVGEIYVGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GDTV VK+ + D++G+I LS K V
Sbjct: 664 VVAIGDTVTVKVTEIDNQGRINLSRKAV 691


>gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
 gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
          Length = 723

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 322/685 (47%), Positives = 468/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGRPL +ETG +A+Q++GAVL  YG+TVVL+T    R  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDVAGRPLIVETGELAKQANGAVLVRYGDTVVLSTATASREAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL+SR+IDR IRPLF++ ++NE QV+  VM  D + +P V
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +++ +S AL +S +PFEGP+ G  V  ++GQ+V+NP +++ ++  L L V+GT+DA+ M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + V+  +    LE E+ Q
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           + + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   +  + VR 
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPYT+R+
Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GRL IL+ M + LSE R +
Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S   A  + 
Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEAANQK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+  RV K  DVV 
Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+ + D +G++ LS K V
Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum
           ferrodiazotrophum]
          Length = 709

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 323/687 (47%), Positives = 462/687 (67%), Gaps = 4/687 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TVE+   G+ +++ETGR+ARQ+DGA +     TV++AT V  +++K G DF PLTV+YQE
Sbjct: 5   TVEVAVGGKTVRIETGRMARQADGAAVLWVEGTVIIATAVAAKTVKPGTDFLPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGG+ +RE +P+E EIL SR++DR +RPLF + +  +TQVI +V+  D    
Sbjct: 65  RAYAAGKIPGGFFKREGKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIASVVSADRSGL 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDA 184
             V+++VAAS AL +S +PF+ P+   +V Y++GQ+V+NP ++ +++ SLDL V+GT DA
Sbjct: 125 TDVMAVVAASTALTISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSSLDLVVAGTADA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           ++MVE +A+++SE++ L+AI   H  C+P+I A  +L K   K    +       +L E+
Sbjct: 185 IMMVEGKADEVSEELFLEAIRTAHAACQPIIAAQRELQKKIGKSKRALPQVPVRPELMEK 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAK 301
           +    +E L     + +K VR ++  +++  +      E       E E  + F +++ +
Sbjct: 245 IRSGGREPLSGILVVSDKKVREEKTSEIRSNLAKELFPEGFADPMQEKEFSNGFHELERE 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R ++LD+ +R DGR +  +R I+ +VG+L RTHGS+LF RG+TQ++ V TLGT +DEQ
Sbjct: 305 LLRAMVLDRGIRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G     FM+HYNF   + GEV  M  P RREIGHG LA RA+ PVLP    FPY
Sbjct: 365 RIDSLEGESHKRFMLHYNFPAFSVGEVKPMRGPGRREIGHGNLAERALIPVLPSKDDFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++R+VS+I ES+GS+SMATVCG +LA+MDAG+PI  PVAGIAMGL+K+GD   ILSDI G
Sbjct: 425 SIRLVSDILESNGSTSMATVCGGTLAMMDAGIPIKAPVAGIAMGLIKEGDRIAILSDILG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKV GTD G+TA+QMD+KI GI+  IM  AL+QA+ GR+HI+ +M + L  
Sbjct: 485 IEDHLGDMDFKVTGTDIGVTAVQMDIKIKGITLEIMKKALEQARVGRIHIMGKMKEALPS 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R Q+  + PR+  + I  D+IR VIG GGK+IR I E+TGAK+ I+D G + +AS+   
Sbjct: 545 VRSQMSPYAPRIMTIQIKQDKIREVIGPGGKMIRSITERTGAKIEIEDSGVIHVASADEE 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A E+I  I    EV KIY G+V  V ++GAFV       GL H+SQL   RV K +
Sbjct: 605 AAKKAIEIIHQIVAEAEVGKIYLGKVKTVAEYGAFVEIMPGTTGLCHVSQLEPRRVEKVT 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVV EGD + VK+L+ D +GKI+LS K
Sbjct: 665 DVVNEGDEIVVKVLEVDRQGKIRLSRK 691


>gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 746

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 324/707 (45%), Positives = 469/707 (66%), Gaps = 19/707 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+   GR L +ETGR+A+Q+ GAVL  YG+TVVL+T    R+L++G DFFPLTV Y+ER 
Sbjct: 7   ELNIGGRVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTVEYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG+IPGG+++RE+RP+EN IL  R+IDRSIRPLF K ++NETQ+I  +M  D + +P 
Sbjct: 67  YAVGRIPGGFIKREARPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAPE 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+  SAAL +S  PF GP+ G  V  ++G+ ++NP   +   S L L V+GT+DAV+
Sbjct: 127 MAAMIGTSAALTISDAPFNGPIGGVIVGRVDGELIINPNAAQSAKSDLHLVVAGTKDAVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE--EM 244
           MVE  AN+++E+V+LDAI +GH+  + +++ I +  +   ++ +     +F+  EE  E+
Sbjct: 187 MVEAGANEVTEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQLAKPKLEFAAPEENQEL 246

Query: 245 SQMIKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            + I E +     +          +K  R    D+LK ++V  F+ ++      +I  +F
Sbjct: 247 IEAIGETMEAEIKMAVRKCVEERMDKKTREAFFDELKDRLVLEFAEQYPEQVS-DIKDLF 305

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+ K+VR +++  ++RMDGR  + VR IS + G+L RTHGS LF RG TQ + VVTLG
Sbjct: 306 RKIEKKLVRQLIVKDRIRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLG 365

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              +EQ +D L   +   +M HYNF P +TGE   M +P RREIGHG LA RA+ P++P 
Sbjct: 366 AISEEQILDGLGTEESKRYMHHYNFPPFSTGETKMMRSPGRREIGHGALAGRALEPMIPG 425

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE  ES+GS+SM +VCGS+LALMDAGVPI  PV+G+AMGL+K+ D+ ++
Sbjct: 426 EEEFPYTIRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVSGVAMGLIKEDDEIVV 485

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GI A+QMD+K+ G+++ I+  ALQQA  GR+HI+ +M
Sbjct: 486 LTDIQGLEDALGDMDFKVAGTAKGINALQMDIKVAGVTQEILEKALQQAYTGRMHIMGKM 545

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +V+S  R +L ++ P +    I PD+IR+VIG GGK I+ IVE+TGA ++I+DDG V +
Sbjct: 546 MEVISAPRQELSKYAPMIIHTTINPDKIRDVIGPGGKTIKKIVEETGANIDIEDDGRVFV 605

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649
           A+      + A  +I  +T    + +IY G+VVK+MDFG FV           ++GLVHI
Sbjct: 606 AAVDREAGQKALSIIEKLTQEVVIGQIYLGRVVKIMDFGCFVEIIPGVLGLPGKEGLVHI 665

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           SQL+ +RV K  DVV EGD + VK +  D+ G++KLS K      GK
Sbjct: 666 SQLAHQRVNKVEDVVAEGDMILVKAIGNDNMGRLKLSKKEAMPQEGK 712


>gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens TA208]
 gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           LL3]
          Length = 707

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 321/689 (46%), Positives = 460/689 (66%), Gaps = 4/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D   
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  I+GQ+++NP +D+ ++  ++L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I+  +  ++L E
Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSE 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301
           ++  + + DL  +  + EK+ R   I+ +K  +V+ F  E H      ++      +   
Sbjct: 245 KVKSLAEPDLLSAIQVHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLVKN 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D Q
Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPY
Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI G
Sbjct: 425 TVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDIQG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   L E
Sbjct: 485 MEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR +L ++ P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+  +
Sbjct: 545 SRKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K  
Sbjct: 605 SNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+ + D +G++ LS K V
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
          Length = 705

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 321/689 (46%), Positives = 460/689 (66%), Gaps = 4/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D   
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  I+GQ+++NP +D+ ++  ++L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I+  +  ++L E
Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSE 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301
           ++  + + DL  +  + EK+ R   I+ +K  +V+ F  E H      ++      +   
Sbjct: 245 KVKSLAEPDLLSAIQVHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLVKN 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D Q
Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPY
Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI G
Sbjct: 425 TVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDIQG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   L E
Sbjct: 485 MEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR +L ++ P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+  +
Sbjct: 545 SRKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K  
Sbjct: 605 SNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+ + D +G++ LS K V
Sbjct: 665 DVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 697

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 326/686 (47%), Positives = 458/686 (66%), Gaps = 6/686 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V +   GR L LETGR+A+Q++GAV A Y  + VLATV    S  +  DF PL V Y 
Sbjct: 3   HQVTVSIGGRDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+L+RE RP + EIL+SR+IDR +RPLFSK +K E Q+I   +  D  +
Sbjct: 63  EKYYAAGKIPGGFLKREGRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPTTVSADQIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+M AASAA+ +S +PF GPV   ++  ++ + ++NP  D+  + +L++ VSGT+D
Sbjct: 123 PPDIVAMNAASAAVCVSDIPFAGPVGAVRIANVDDELIINPSFDQISRCTLEIVVSGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLE 241
            + MVE  A ++ E+++L AI       K + EA  +L  +  KE  P+V++ K   +  
Sbjct: 183 GITMVEGGAKEVPEELLLSAIALAEPAIKKLCEAQEQLMALAGKEKLPLVVEEKKLER-R 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +EM       +  +CF+  K  R   +  +K +    F+ + +  NE    ++ E+++ K
Sbjct: 242 QEMWDFAYPKMEEACFVKGKMNRGAAVKAVKTETAEAFADDLNEDNERLFNALMEEMETK 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +LDK VR DGRD ETVR I+ +VG+L R HGS+LF RG+TQ++ V TLGT  DEQ
Sbjct: 302 VVRSSILDKGVRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDEQ 361

Query: 362 YVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D++ G +   +FM+HYNF P + GE  R+    RREIGHG LA RA+  VLPQ   FP
Sbjct: 362 MMDNIDGDKTYENFMLHYNFPPFSVGETGRL-TTGRREIGHGHLAHRALEAVLPQKKDFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEI ES+GSSSMATVCG +L+L+ AGVPI KPVAGIAMGLV +GD   +L+DI 
Sbjct: 421 YTIRVVSEILESNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAAVLTDIL 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+EDHLG MDFKVAGT+ GITA QMD+KI GIS ++M  AL+QAK+GR+HIL  M+  L 
Sbjct: 481 GEEDHLGDMDFKVAGTEDGITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMNATLK 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E    + +F P++  + +  D+I  +IG GGK I+ I EQ+G++VNIDD+GTV I   + 
Sbjct: 541 EPVSDVSDFAPKILSLKVDVDKIGAIIGPGGKTIKAIAEQSGSEVNIDDNGTVTIFGKTK 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + E ARE I++I + PEV KIY+G V ++MDFGAFV     ++GL HIS+LS +RV   
Sbjct: 601 EKAEKAREFIKAIVEEPEVGKIYEGTVKRIMDFGAFVEILPGKEGLCHISKLSRKRVNSV 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLS 686
           SDV+     + VKL++ D +G++ LS
Sbjct: 661 SDVLAVDQKIPVKLIEIDRQGRLNLS 686


>gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Gardel]
 gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 789

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 342/709 (48%), Positives = 483/709 (68%), Gaps = 13/709 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ++GAV+ TYG T VL+TVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRKSTEWGGKTLVLESGKIARQANGAVVVTYGGTTVLSTVVAGKA-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDE-DQGSLDLF 177
           D  + P V +++ A+AAL +SG+PF G VVGA+V Y+    +Y+LN   DE    SLDLF
Sbjct: 120 DTVTPPEVTALIGATAALAISGVPFNGMVVGARVGYLLSEDKYLLNASADEMLSSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +SG +D+VLMVE EA++LSE  +L AI FGH  C+ VI+ I +  +     P      D 
Sbjct: 180 LSGNKDSVLMVESEASELSESQMLAAISFGHQNCQEVIKLIEEFREESGILPFGFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEG 289
           + L ++++    E   ++     K  R  +++ L+ +++S   +++          ++  
Sbjct: 240 TSLVDDIASSYTESFSIAYSNIVKKERVLELEKLRDQVLSDMLAKYEQPNGNLQCQYSSQ 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           +I+S  +  +  +VR+ +++   R+DGR    +RDI  ++ +L +THGS+LF RG+TQA+
Sbjct: 300 DIISALKSFERSLVRSKIIETSSRIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQAL 359

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV  LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA +AI
Sbjct: 360 VVTALGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWKAI 419

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             VLP+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+
Sbjct: 420 RYVLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKE 479

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ FIILSDI GDEDHLG MDFKVAGT SGITA+QMDMKI GIS  ++  +L QAK GR+
Sbjct: 480 GEKFIILSDILGDEDHLGDMDFKVAGTSSGITALQMDMKISGISIEVIEKSLLQAKDGRM 539

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL++M+ V+ ESR  +    PR+E + I  D+IRNVIG GGK IR I E+TGA+V I  
Sbjct: 540 HILDKMNLVIQESRECIKNHAPRIESIFINKDKIRNVIGSGGKNIREICEKTGARVEIMQ 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV I + +   +E A+ MI  I   PE+ K++ G V++++ FGAFV F G + GL+HI
Sbjct: 600 DGTVMIYAINNDAVEYAKNMIMDIVSEPEIGKVFDGTVIEIVKFGAFVSFLGGKRGLIHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           S++  E +     V+   D V V ++   DR  ++LSM+ VDQ TG+PI
Sbjct: 660 SEIKNEHINAVGSVISVNDKVKVLVIGI-DREYVQLSMRRVDQETGEPI 707


>gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 712

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/685 (45%), Positives = 466/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+WAGRPL +E G +A+Q++GAVL  YG+TVVL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLFS+ ++NE Q++  VM  D + SP +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +++ +S AL +S +PFEGP+ G  V  ++G++V+NP +++ + S + L V+GT+DA+ M
Sbjct: 129 AALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+++ E+++L+AI+FGH + K +I    ++A    KE + +   +   +LE ++ Q
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAKIRQ 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           + + D++ +  +PEK  R   I+++K  +++ Y   E       ++  +   +  + VR 
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEILHKLVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D Q +D 
Sbjct: 309 LITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPYT+R+
Sbjct: 369 LGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GR+ IL+ M + + E R +
Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTIREPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++  M I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S + A  E 
Sbjct: 549 LSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVNEAMNEK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV +  DVV 
Sbjct: 609 AKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+++ D +G++ LS K V
Sbjct: 669 IGDEILVKVMEIDKQGRVNLSRKAV 693


>gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans
           C-125]
 gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125]
          Length = 704

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 328/689 (47%), Positives = 460/689 (66%), Gaps = 6/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAVL  YG+T VL+T    +  KD   FFPLTVNY+
Sbjct: 6   HEFSIDWAGRKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA GKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QVI  VM  D + 
Sbjct: 65  ERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +MV +S AL +S +PFEGP+ G  V  I+GQ+V+NP  D+ ++  + L V+GT+D
Sbjct: 125 SSEMAAMVGSSLALSISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDIHLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLE 241
           A+ MVE  A ++ EDV+L+AI+FGHNE K +IE   K+A    K    +V+   D   LE
Sbjct: 185 AINMVEAGAEEVPEDVMLEAIMFGHNEIKRLIEFQEKIAAEVGKSKTDVVLKQVD-PMLE 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+    +EDL+ +  +PEK+ R   I+ +  K++  +  ++      E+  +   I  +
Sbjct: 244 QEVRVKAEEDLKQAVQVPEKHARQDAIEAVMDKVLETYE-DNEDVPLSEVNEILHKIVKE 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++  +K+R DGR+ + +R +S+QVG+L RTHGS LF RG TQA+ + TLG   D Q
Sbjct: 303 EVRRLITVEKIRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDVQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+ PV+P    FPY
Sbjct: 363 ILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPSEQDFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK  +   +L+DI G
Sbjct: 423 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHVSVLTDIQG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QA++GR+ IL+ M + +SE
Sbjct: 483 MEDALGDMDFKVAGTRKGVTALQMDIKISGIDRAILEQALEQARKGRMIILDNMLEAISE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR +L  + P++  M I PD+IR+VIG  GK+I  I+E TG K++I+ DGT+ I+S+   
Sbjct: 543 SRSELSPYAPKILTMTINPDKIRDVIGPSGKMINKIIEDTGVKIDIEQDGTIYISSADTN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               ARE+I  I    EV ++Y G V ++  FGAFV     +DGLVHISQL+ ERV K  
Sbjct: 603 MNNKAREIIEDIVREVEVGQMYLGTVKRIEKFGAFVELFKGKDGLVHISQLAEERVNKVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+++ D++G++ LS K V
Sbjct: 663 DVVKIGDEILVKVMEIDNQGRVNLSRKAV 691


>gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii
           str. Madrid E]
 gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia
           prowazekii]
          Length = 745

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 325/691 (47%), Positives = 477/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L++ TG+IARQ++ AV    G +++L T V    +KDG  FFPLT
Sbjct: 1   MFNEITKSVMWNGQVLEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  Y+ GKIPGG+ +RE + ++ EIL+SR+IDR IRPLF + + +ET V  +V+ +
Sbjct: 61  INYREMAYSAGKIPGGFFKREGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D  +   +++++ ASAAL +S  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPATPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+D+V+MVE EA+ LSED +L+A+ FG    + VI+ I +LAK   K    +     S 
Sbjct: 181 GTEDSVMMVESEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKEAKKPKFEMQDLYPSS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +  + +K++++F    E+  +N  +I S  + 
Sbjct: 241 LKKEIEKLFTKEVEQAFEIKSKQERSTDLALIYEKVLTHFVRDIENKKYNNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I A ++R  +L+K +R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 ISADILRNKILEKNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+ + F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT SGITA+QMD+KI GI   I+ +AL+QA+ GRLHIL +M+K
Sbjct: 481 DIIGDEDYFGDMDFKVAGTSSGITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+I+++IG GGK+I+ I E + AK++I DDGTV I +
Sbjct: 541 VISKPNSELSKNAPSSTTVKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +I+ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S  R+
Sbjct: 601 SDRDKIKIALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K S V+K+GD V VKL+ FD++GK KL++K
Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691


>gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 789

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 342/709 (48%), Positives = 483/709 (68%), Gaps = 13/709 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ++GAV+ TYG T VL+TVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRKSTEWGGKTLVLESGKIARQANGAVVVTYGGTTVLSTVVAGKA-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDE-DQGSLDLF 177
           D  + P V +++ A+AAL +SG+PF G VVGA+V Y+    +Y+LN   DE    SLDLF
Sbjct: 120 DTVTPPEVTALIGATAALAISGVPFNGMVVGARVGYLLSEDKYLLNASADEMLSSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +SG +D+VLMVE EA++LSE  +L AI FGH  C+ VI+ I +  +     P      D 
Sbjct: 180 LSGNKDSVLMVESEASELSESQMLGAISFGHQNCQEVIKLIEEFREESGILPFGFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEG 289
           + L ++++    E   ++     K  R  +++ L+ +++S   +++          ++  
Sbjct: 240 TSLVDDIASSYTESFSIAYSNIVKKERVLELEKLRDQVLSDMLAKYEQPNGNLQCQYSSQ 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           +I+S  +  +  +VR+ +++   R+DGR    +RDI  ++ +L +THGS+LF RG+TQA+
Sbjct: 300 DIISALKSFERSLVRSKIIETSSRIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQAL 359

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV  LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA +AI
Sbjct: 360 VVTALGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWKAI 419

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             VLP+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+
Sbjct: 420 RYVLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKE 479

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ FIILSDI GDEDHLG MDFKVAGT SGITA+QMDMKI GIS  ++  +L QAK GR+
Sbjct: 480 GEKFIILSDILGDEDHLGDMDFKVAGTSSGITALQMDMKISGISIEVIEKSLLQAKDGRM 539

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL++M+ V+ ESR  +    PR+E + I  D+IRNVIG GGK IR I E+TGA+V I  
Sbjct: 540 HILDKMNLVIQESRECIKNHAPRIESIFINKDKIRNVIGSGGKNIREICEKTGARVEIMQ 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV I + +   +E A+ MI  I   PE+ K++ G V++++ FGAFV F G + GL+HI
Sbjct: 600 DGTVMIYAINNDAVEYAKNMIMDIVSEPEIGKVFDGTVIEIVKFGAFVSFLGGKRGLIHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           S++  E +     V+   D V V ++   DR  ++LSM+ VDQ TG+PI
Sbjct: 660 SEIKNEHINAVGSVISVNDKVKVLVIGI-DREYVQLSMRRVDQETGEPI 707


>gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           kaustophilus HTA426]
 gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Geobacillus kaustophilus HTA426]
          Length = 723

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 467/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGRPL +ETG +A+Q++GA L  YG+TVVL+T    R  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDVAGRPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL+SR+IDR IRPLF++ ++NE QV+  VM  D + +P V
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +++ +S AL +S +PFEGP+ G  V  ++GQ+V+NP +++ ++  L L V+GT+DA+ M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + V+  +    LE E+ Q
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           + + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   +  + VR 
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPYT+R+
Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GRL IL+ M + LSE R +
Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S   A  + 
Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEAANQK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+  RV K  DVV 
Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+ + D +G++ LS K V
Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens FZB42]
 gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
          Length = 707

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 322/692 (46%), Positives = 462/692 (66%), Gaps = 10/692 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +E G++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  I+G++V+NP +D+ ++  ++L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           A+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I+     +++EE
Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIE---LYEIDEE 241

Query: 244 MSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDI 298
           +S+ +K     DL  +  + EK+ R   I+++K  +V+ F  E H      ++      +
Sbjct: 242 LSEKVKSLAEPDLLSAIQVHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKL 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   
Sbjct: 302 VKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALG 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    
Sbjct: 362 DVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKD 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+D
Sbjct: 422 FPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTD 481

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   
Sbjct: 482 IQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLST 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L ESR +L ++ P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+
Sbjct: 542 LGESRKELSQYAPKILTMNINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISST 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV 
Sbjct: 602 DESSNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVG 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DVVK GD + VK+ + D +G++ LS K V
Sbjct: 662 KVEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp.
           Y412MC61]
 gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
 gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC61]
 gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
          Length = 723

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 467/685 (68%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AGRPL +ETG +A+Q++GA L  YG+TVVL+T    R  K+  DFFPLTVNY+ER Y
Sbjct: 10  IDVAGRPLIVETGELAKQANGAALVRYGDTVVLSTATASREAKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL+SR+IDR IRPLF++ ++NE QV+  VM  D + +P V
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +++ +S AL +S +PFEGP+ G  V  ++GQ+V+NP +++ ++  L L V+GT+DA+ M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           VE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + V+  +    LE E+ Q
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           + + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   +  + VR 
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLVKEEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D Q +D 
Sbjct: 309 LITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +FPYT+R+
Sbjct: 369 LDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDIQGIEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GRL IL+ M + LSE R +
Sbjct: 489 LGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S   A  + 
Sbjct: 549 LSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVDEAANQK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+  RV K  DVV 
Sbjct: 609 AKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+ + D +G++ LS K V
Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
 gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
          Length = 719

 Score =  635 bits (1637), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 336/712 (47%), Positives = 473/712 (66%), Gaps = 24/712 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG +ARQ+ GAVL T  +TVVL +VV  +++K GQDFFPLT
Sbjct: 1   MFNKISKTFQYGRHTVTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  VM  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+ ASAAL +SGLPF GP+  A+V Y NG Y+LNP   E + S LDL V+
Sbjct: 121 NPEIDSDIPAMIGASAALAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID------ 233
           GT  AVLMVE EA +L E V+L A++FGH++ +  I+AI++LA      P++ D      
Sbjct: 181 GTHRAVLMVESEAKELPEAVMLGAVVFGHDQLQAAIKAINELADEV--NPVMWDWSAPAQ 238

Query: 234 -SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +  +K+ E   + I    R+        V  +   D+K  +++    E  +    EI 
Sbjct: 239 NDELIAKVREVSGEKIANAFRIRQKQARTQVLAEAWADVKAALIN---EETDTLTANEIK 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +F+ ++A++VR  +L  + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV 
Sbjct: 296 GIFKSLEAEIVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVT 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DEQ +D+L+G   + FM+HYNF P +TGE  RMG P RREIGHGRLA+RA+  V
Sbjct: 356 TLGTQRDEQIIDALAGEYTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQV 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +F Y++R+VSEITES+GSSSMA+VCG  LAL++AGVP+   VAGIAMGL+ +G+ 
Sbjct: 416 LPSADEFGYSMRVVSEITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNR 475

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GRLHIL
Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALDQAKEGRLHIL 535

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M + + E   QL    PR+ +M I PD+IR VIG GG+ IR I + TG ++NI++DGT
Sbjct: 536 GLMKEAV-EGPQQLSTHAPRLFVMKINPDKIREVIGKGGETIRSITKDTGTEINIEEDGT 594

Query: 593 VKIASSS--------LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + IAS +        +   EA R   R      ++ + ++G+  +  + GA V     +D
Sbjct: 595 ITIASVTQXXXXKVLMPXQEAHRGNHRRSRSRQDLRR-HRGEDSR-HNVGAIVSILPGKD 652

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           GLVHISQ++ ER+   SD +KEG  V VK ++ DDRG+I+LS+K + ++  K
Sbjct: 653 GLVHISQIANERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEDEAK 704


>gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii
           Rp22]
          Length = 745

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/691 (46%), Positives = 476/691 (68%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L++ TG+IARQ++ AV    G +++L T V    +KDG  FFPLT
Sbjct: 1   MFNEITKSVMWNGQVLEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  Y+ GKIPGG+ +RE + ++ EIL+SR+IDR IRPLF + + +ET V  +V+ +
Sbjct: 61  INYREMAYSAGKIPGGFFKREGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D  +   +++++ ASAAL +S  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPATPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+D+V+MVE EA+ LSED +L+A+ FG    + VI+ I +LAK   K    +     S 
Sbjct: 181 GTEDSVMMVESEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKEAKKPKFEMQDLYPSS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +  + +K++++F    E+  +N  +I S  + 
Sbjct: 241 LKKEIEKLFTKEVEQAFEIKSKQERSTDLALIYEKVLTHFVRDIENKKYNNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I A ++R  +L+K +R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 ISADILRNKILEKNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+ + F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI GI   I+ +AL+QA+ GRLHIL +M+K
Sbjct: 481 DIIGDEDYFGDMDFKVAGTSQGITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+I+++IG GGK+I+ I E + AK++I DDGTV I +
Sbjct: 541 VISKPNSELSKNAPSSTTVKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +I+ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S  R+
Sbjct: 601 SDRDKIKIALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K S V+K+GD V VKL+ FD++GK KL++K
Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691


>gi|51473686|ref|YP_067443.1| polynucleotide phosphorylase/polyadenylase [Rickettsia typhi str.
           Wilmington]
 gi|81390070|sp|Q68WN1|PNP_RICTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51459998|gb|AAU03961.1| Polynucleotide phosphorylase [Rickettsia typhi str. Wilmington]
          Length = 745

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/691 (46%), Positives = 477/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W  + L++ TG+IARQ+D AV    G +++L T V    +KDG  FFPLT
Sbjct: 1   MFNEITKSVIWNRQVLEISTGKIARQADAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  Y+ GKIPGG+L+RE + ++ EIL+SR+IDR IRPLF + + +ET +  +V+ +
Sbjct: 61  INYREMAYSAGKIPGGFLKREGKASDKEILVSRLIDRPIRPLFHQAFIHETHITCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL +S  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+D+V+MVE EA+ LSE+ +L+AI FG    + VI+ I + AK   K    +     S 
Sbjct: 181 GTKDSVMMVESEAHLLSEEKMLEAIKFGFENFQTVIKLIKEFAKEAKKPKFEMQDLYPSS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +  + +K++++F    E+  +N  +I S  + 
Sbjct: 241 LKKEIGKLFAKEIEQAFAIKSKQERNANLALIHEKVLTHFVCDIENKKYNNYQIESTLKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I A ++R  +L++ +R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 ISADILRNKILEQNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGL+K+GD F ILS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLIKEGDKFAILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI GI   I+ +AL+QA+ GRLHIL +M+K
Sbjct: 481 DIIGDEDYFGDMDFKVAGTSKGITALQMDIKISGIDFKIIQVALEQARHGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++S+   +L +  P    + I  D+I+++IG GGK+I+ I E + AK++I DDGTV + +
Sbjct: 541 IISKPNSELSKNAPSSTTIKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   +I+ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S  R+
Sbjct: 601 ADRDKIKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISETRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K S V+K+GD V VKL+ FD++GK KL++K
Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691


>gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
 gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
          Length = 722

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 325/695 (46%), Positives = 468/695 (67%), Gaps = 9/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + +V +E+ G+ ++++TG++ARQ+  AV+   G+ V+L T V +   K+G DFFPLTVNY
Sbjct: 1   MESVSVEFGGKIIEMQTGQVARQASAAVVVRQGDNVILVTAVSNNEPKEGIDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ Y+ G+IPGG+ +RE  P+++E LISR+IDR +RPLF   Y NETQVI  VM  D E
Sbjct: 61  IEKRYSSGRIPGGFKKREGMPSDDETLISRLIDRPLRPLFPDGYFNETQVIATVMSSDGE 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           +   V++M  A+ AL +S +PF GP+   ++  I+GQ+VLNP   + +Q  +D+ ++ T+
Sbjct: 121 TPADVLAMYGAATALHISDVPFNGPLGACRIGRIDGQFVLNPTYAQIEQSDMDISLAATR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDF 237
           DA+LM+E  A ++S+  +LDA+ FG  E   +++A  +L         A  P ++  +  
Sbjct: 181 DAILMIEAGAKEVSDQDILDAVAFGQREMGRLLDAQEQLRTQAGTPKRAFTPQLVRDEVR 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID-DLKKKMVSYFSSEHSSWNEGEIVSVFE 296
             + E+ +  +++ L     + E Y    Q   DL++   +    E  +  + E +  F 
Sbjct: 241 GAVREQFAGRLRDALAAGGKM-EVYSAIDQTKKDLQEHFAAVLGEEEFAAQKKEYMRAFG 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++  ++R  +LD+  R+DGR    VR IS     L RTHGS LF RG+TQAIVV TLGT
Sbjct: 300 DLERDIMRGRILDEGKRVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ+V++L G +R+++M HYNF P   GE   + +P RREIGHG LA+RAI  VLPQ 
Sbjct: 360 VSDEQFVENLEGERRSNYMFHYNFPPYCVGEAGFLRSPGRREIGHGALAKRAIEAVLPQG 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   V+GIAMGL+ +GD F +L
Sbjct: 420 EDFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDHLG MDFKVAGT  GIT++QMD+K+ GI+  IM  A++QA  GR+HIL+ M+
Sbjct: 480 TDILGIEDHLGDMDFKVAGTSRGITSLQMDIKVEGITLEIMKAAIEQANGGRMHILDRMN 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + L   R +L    PR+  + + PD+IR++IG GGKVIRGIVEQTGAK++IDDDG   +A
Sbjct: 540 EALDTHRPELNPHAPRIVTIYVKPDKIRDIIGTGGKVIRGIVEQTGAKIDIDDDGRCLVA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S++   ++ A  +I+ I + PE+ K YKG+V KV +FGAFV F   +DGL+HISQ+  +R
Sbjct: 600 SANKESLDMAVAIIQGILEEPEIGKTYKGKVKKVAEFGAFVEFLPNQDGLLHISQIDHKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           V + SDV++EGD + V+L++ D + GK KLS K +
Sbjct: 660 VERVSDVLQEGDELEVQLIEVDSKTGKYKLSRKAL 694


>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
           floridanus]
 gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Candidatus Blochmannia floridanus]
          Length = 697

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/689 (46%), Positives = 467/689 (67%), Gaps = 4/689 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + L TG IARQ++ AV+ + G+T VL TVV     K  Q FFPL V+YQERT
Sbjct: 8   KFQYGQHTVVLNTGAIARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLVVHYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+ RRE RP+E+EIL SR+IDR IRPLF K + N+ Q+I  V+  + +  P 
Sbjct: 68  YAAGKFPGGFFRREGRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSVNPQIHPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +V+M+  SAAL LS +PF GP+  A+V YI  QY+LNP   E   S LDL V+GT   +L
Sbjct: 128 IVAMIGVSAALSLSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLDLVVAGTDSNIL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE  A  LSE  +L+AI+FGH + + VI+ I++L K   K       KD    L E +S
Sbjct: 188 MVESAACVLSEQEMLNAIVFGHEQQQTVIQNINQLVKKAGKVKYDWKLKDMDILLSEYLS 247

Query: 246 QMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVV 303
            + +  + VSC +   K  R +Q++++K  ++     E++ + +  E++S   +++ K++
Sbjct: 248 NLYRSRVNVSCLVGVNKKDRQEQLNNIKHDIIDITLREYNENIDVNEVMSFLNNLEIKLL 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L   VR DGR  + +R+I    G+L RTHGS+LF RGDTQA+V  TLGT  D Q +
Sbjct: 308 RSSILRDNVRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTERDAQNL 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+G + + F++HYNF P  TGE+  +GAP RREIGHGRLA+R +  V+P + +FPYT+
Sbjct: 368 DELTGDRVDRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPNSNEFPYTV 427

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+TES+GSSSMA++CG+SLALMDAGVPI + VAG+AMGL+K+  +FIILSDI  DE
Sbjct: 428 RVVSEVTESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKENSNFIILSDIISDE 487

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH+G MDFKV+GT +GITA+QMD+KI GI+ +I+ ++ ++A+   L IL+ M +V+   R
Sbjct: 488 DHIGDMDFKVSGTRTGITALQMDIKIKGITYDIIEVSFKKARCALLRILDIMDQVIKIPR 547

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             + EF PR+  + I PD+I++VIG GG VIR + E+T   ++I+DDG +K+ S +  + 
Sbjct: 548 KDISEFAPRIYSIKINPDKIKDVIGKGGSVIRALTEKTSTIIDIEDDGVIKVISLNAEKA 607

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A + I+ IT    +  IY G+V  ++DFGAFV     ++GLVHISQ++ +RV + SD 
Sbjct: 608 KQAVDRIQEITANIAIGSIYTGRVTHIVDFGAFVTLFAGKEGLVHISQITEKRVNRVSDY 667

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K G  V VK+L+ D +G+++LSM+ ++ 
Sbjct: 668 LKLGQEVLVKVLEIDRQGRMRLSMRGINH 696


>gi|187471092|sp|Q2IQ01|PNP_ANADE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 721

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 319/688 (46%), Positives = 457/688 (66%), Gaps = 12/688 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+ +A G+
Sbjct: 12  GKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGR 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           +PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+   V+++ 
Sbjct: 72  VPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLALT 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELE 191
            ASAAL +S +PF GP+ G +V  + GQ V NP L +     LD+ ++ ++DA++MVE  
Sbjct: 132 GASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASRDAIVMVEGG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQMIK 249
           A ++SE V+++A++FG    +P+++A   L      +P       K+  +L  ++  +  
Sbjct: 192 AQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRRAFDPPKNDVELRAKVKALTW 251

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQA 300
           E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   +ED++ 
Sbjct: 252 EKVKEAYGRDEKHDRYGRLSEIKKELLQALKEEAAGDAAKLATIALREKEIKGYYEDVKY 311

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TLGT EDE
Sbjct: 312 DYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDE 371

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P   QFP
Sbjct: 372 QRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFP 431

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   ILSDI 
Sbjct: 432 YTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDIL 491

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT +GIT++QMD+KIGG++  I+  AL QA  GR HIL EM+K LS
Sbjct: 492 GDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKALS 551

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V IAS + 
Sbjct: 552 APRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPNQ 611

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS +RV   
Sbjct: 612 DKVEEAIKMIRGLTQEAEVGRIYMGTVRKIAEFGAFVEIFPGTDGLIHISELSDKRVKSV 671

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SDV+ EG+ V VK++  D  GKI+LS K
Sbjct: 672 SDVLSEGEEVMVKVISVDRSGKIRLSRK 699


>gi|167465515|ref|ZP_02330604.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 705

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 332/701 (47%), Positives = 456/701 (65%), Gaps = 11/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  VE++ AGRPL LETGR+A+Q++ +VL  YG+TVVL TV      KD  DFFPLTVNY
Sbjct: 2   VKIVEMDLAGRPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKD-LDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QV+  VM  D E
Sbjct: 61  EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQE 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP + +M   SAAL +S +PF GP+ G  V  I+G++V+NP  ++   S + L V+GT+
Sbjct: 121 CSPEIAAMTGVSAALSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDIHLTVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DA++MVE  A ++ E+V+L+AI+FGH + K ++    +  +      + +      +++E
Sbjct: 181 DAIMMVEAGAAEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEEAGVPKMEVQ---LHQVDE 237

Query: 243 EMSQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFE 296
           E++  ++E           +PEK+ R + ID +  +   +F+S  E       ++  V  
Sbjct: 238 EINAKVREFASAKMIEAIQVPEKHARQEAIDLVSAETEEHFASLLEDDPAKLKDVKEVLH 297

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI  + VR ++  +KVR DGR  + +R I   + LL RTHGS LF RG TQA+ V TLG 
Sbjct: 298 DIVKEEVRRLITHEKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGA 357

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF P + GE   + AP RREIGHG L  RAI  V+P  
Sbjct: 358 LGDVQILDGLDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGARAIEQVIPSE 417

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSE+ ES+GS+S A++C S LALMDAGVPI  PVAGIAMGL+KDG  F IL
Sbjct: 418 EEFPYTIRLVSEVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKDGQHFSIL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDHLG MDFKVAGT  G+TA+QMD+KI GI  +I+  AL QAK GR+ IL +M 
Sbjct: 478 TDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKINGIDRDILHQALTQAKEGRMFILEKML 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +S+ + +L  + P++  M+I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IA
Sbjct: 538 SRISDPKKELSPYAPKILTMSIHPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIA 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+    + A+E+I  I     V + Y G V ++  FGAFV     ++GLVHISQLS ER
Sbjct: 598 SSNEQMNQKAKEIIEGIVREVVVGETYLGTVKRIEKFGAFVEVLPNKEGLVHISQLSIER 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           VAK  DVV  GD + VK+ + D++G+I LS K    N  KP
Sbjct: 658 VAKVEDVVSIGDKITVKVTEIDNQGRINLSRKATLVNQEKP 698


>gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
 gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
          Length = 703

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/695 (45%), Positives = 461/695 (66%), Gaps = 3/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M  +HT   E  GRPL +ETG+IA+Q++G+VL  YGET V+  V    + ++G DFFPLT
Sbjct: 9   MQRMHTFSTELGGRPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ YAVGKIPGG+LRRE RP E  IL SR+IDR IRP+F   Y N+ Q++   +  
Sbjct: 69  VDFEEKMYAVGKIPGGFLRREGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSV 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +++P + +M+ AS AL +S +PFEGP+ G +V  ++G++++NP L++   S +++ V+
Sbjct: 129 DPDNAPDIPAMIGASCALSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSEMNVAVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT++A+LMVE  A ++SE V+LDAI+FGH E K ++    ++     K  +         
Sbjct: 189 GTKEAILMVEAGAKEVSEQVMLDAILFGHEEIKKLVAFQEQIQAEVGKPKMEFTPYVPPE 248

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L +E+ +  +  +  +   P+K  R K + + K+ ++ +F  E    +E +I  + + +
Sbjct: 249 ALSKEIMEYGEPKIHDALMDPDKLHRDKMVSETKEAILEHFV-ELYPESEIDIAHIVQKL 307

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             KV R ++   K+R DGR  + VR IS +VGLL R HG SLF RG TQ +  + L    
Sbjct: 308 VKKVFRHIITHDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLR 367

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D L       ++ HYNF P + GE   + +P RREIGHG LA RA+ PV+P   +
Sbjct: 368 EAQTLDGLGTELTKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEE 427

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMA+ C S+L+LMDAGVPI  PV+G+AMGLVK+GDD  IL+D
Sbjct: 428 FPYTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGDDITILTD 487

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT+ GITA+QMD+KI GI+  I   AL+QA++GR +IL +M + 
Sbjct: 488 IQGLEDANGDMDFKVAGTEKGITAIQMDIKIDGINRQIFEQALEQARKGRAYILGKMLEC 547

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R  L E  P++  + I PD+I++VIG GGKVI+ I E++GAK++I++DGTV +A++
Sbjct: 548 IPAPRPSLKEHAPKITTLKINPDKIKDVIGPGGKVIKKITEESGAKIDIEEDGTVYVAAA 607

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A    A E I +IT  PE+ KIY G+V ++M+FGAFV F   R+GLVHISQL+ ERV 
Sbjct: 608 DQASANKAIEAINAITAEPEIGKIYTGKVTRLMNFGAFVEFMPGREGLVHISQLAKERVE 667

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  DVV  GD + VKL++ D +G++ LS K   Q+
Sbjct: 668 KVEDVVNVGDEIVVKLVEIDAKGRMNLSRKAALQS 702


>gi|86157534|ref|YP_464319.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774045|gb|ABC80882.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 749

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 319/689 (46%), Positives = 457/689 (66%), Gaps = 12/689 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+ +A G
Sbjct: 39  GGKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAG 98

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           ++PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+   V+++
Sbjct: 99  RVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLAL 158

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVEL 190
             ASAAL +S +PF GP+ G +V  + GQ V NP L +     LD+ ++ ++DA++MVE 
Sbjct: 159 TGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASRDAIVMVEG 218

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQMI 248
            A ++SE V+++A++FG    +P+++A   L      +P       K+  +L  ++  + 
Sbjct: 219 GAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRRAFDPPKNDVELRAKVKALT 278

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQ 299
            E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   +ED++
Sbjct: 279 WEKVKEAYGRDEKHDRYGRLSEIKKELLQALKEEAAGDAAKLATIALREKEIKGYYEDVK 338

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TLGT ED
Sbjct: 339 YDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAED 398

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P   QF
Sbjct: 399 EQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQF 458

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   ILSDI
Sbjct: 459 PYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDI 518

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT +GIT++QMD+KIGG++  I+  AL QA  GR HIL EM+K L
Sbjct: 519 LGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKAL 578

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V IAS +
Sbjct: 579 SAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPN 638

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS +RV  
Sbjct: 639 QDKVEEAIKMIRGLTQEAEVGRIYMGTVRKIAEFGAFVEIFPGTDGLIHISELSDKRVKS 698

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            SDV+ EG+ V VK++  D  GKI+LS K
Sbjct: 699 VSDVLSEGEEVMVKVISVDRSGKIRLSRK 727


>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
           carboxydivorans Nor1]
 gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
           carboxydivorans Nor1]
          Length = 699

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 318/690 (46%), Positives = 468/690 (67%), Gaps = 9/690 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T +++ AGR L +ETG++A+Q++GAVL  YG+T VL T       + G DFFPLTV+Y
Sbjct: 1   MQTFQMQLAGRALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE RP+E  IL  R+IDR IRPLF++ ++N+  V+  V+  D +
Sbjct: 61  EERLYSVGKIPGGFIKREGRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P + +M+ AS AL +S +PF GP+ G +V  ++GQ+++NP +++ + S L+L V+GT+
Sbjct: 121 NPPDIPAMIGASCALSISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSDLNLVVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           DAVLMVE  AN++ E+ +LDAI FGH+  + ++    K+     K    I   +   +++
Sbjct: 181 DAVLMVEAGANEVPEEAILDAITFGHDVIREIVAFQEKIVAEVGKPKREIPLYEVPPEID 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             + + + E L+ +   P+K +R +QI  +K +   +F   +   N  +I  V + +  +
Sbjct: 241 AAVREYVTEKLKDAVTNPDKLMREEQIKQVKAEATEHFLVLYPD-NAKDIAYVMQKVLKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++   KVR DGR  + +R IS +VGLL+RTHGS LF RG TQ + V TLG   DEQ
Sbjct: 300 IVRKMITIDKVRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 360 ILDGLGVEESKRYMHHYNFPAFSVGETRPARGPGRREIGHGALAERALLPVIPPETEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+SM +VCGS+L+LMDAGVPI  PV+G+AMGLVK+GD + IL+DI G
Sbjct: 420 TIRLVSEVLESNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLVKEGDHYTILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  G+TA+QMD+KI GI++ I+  AL+QA+RGRL IL++M +V+ E
Sbjct: 480 IEDALGDMDFKVAGTAKGVTAIQMDIKISGITKEILADALEQARRGRLFILDKMLEVIKE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PR+  M I PD+IR+VIG GGK I+ I+++TG  ++I+DDG V IA+    
Sbjct: 540 PRPELSPYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGVTIDIEDDGKVFIAA---V 596

Query: 602 EIEAAREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           ++EA ++ +R I ++    EV  +Y G+V ++M+FGAFV     ++GLVHISQL+ ERV 
Sbjct: 597 DVEAGKKAVRIIENLVRDVEVGGVYMGKVTRLMNFGAFVEILPGKEGLVHISQLARERVN 656

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K  DVVK GD + VK+ + D +G+I LS K
Sbjct: 657 KVEDVVKVGDEILVKVTEIDRQGRINLSRK 686


>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase/polyadenylase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123575939|sp|Q3ABA6|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 731

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 325/700 (46%), Positives = 469/700 (67%), Gaps = 22/700 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           EI  AGRPLKL  G++A Q+ G+VL +YG+TVVL T    +  ++G DFFPLTV+Y+ER 
Sbjct: 11  EIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEERF 70

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RP+E  IL +R+IDR IRPLF K +KN+  ++  V+  + ++ P 
Sbjct: 71  YAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPE 130

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M  ASAAL LS LPF GP+    V  +  + V+NP +++ + S L L V+GT+DAV+
Sbjct: 131 IAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGTRDAVM 190

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFSKLE 241
           MVE  A ++ E+++++AI  GH E K ++  I +  +       AKE + +  ++ ++L+
Sbjct: 191 MVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKEKMEVVVEEKAELK 250

Query: 242 E----EMSQMIKEDLRVSCFIPEKY---VRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           E    E   ++KE   +   I EK+    R + +++LKK++ + F   +    E  I  +
Sbjct: 251 EAVTAEAYPLLKE--AIEKIIAEKFNKQERDEYLENLKKELTTKFLETYPE-EELTIKGI 307

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            + IQ ++VR  +L + +R+DGR ++ VR I  +VGLL RTHGS LF RG TQ + +VTL
Sbjct: 308 LDSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTL 367

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D Q +D L   +   FM HYNF P + GEV  M  P RREIGHG LA RA+ PV+P
Sbjct: 368 GAVGDVQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIP 427

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+RIVSE+ ES+GS+SM +VCGS+LALMDAGVPI  PVAG+AMGL+K+GD+  
Sbjct: 428 PEEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVA 487

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT  GITA+QMD+KI G++ +I+  AL QA+ GR+HIL +
Sbjct: 488 ILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMHILGK 547

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M +V+SE R +L  + PR+    + P++IR++IG GGK+I+ I+++TG K++I+DDG + 
Sbjct: 548 MLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVKIDIEDDGRIF 607

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC------GARDGLVH 648
           IA+      E A  +I ++T   EV K+Y G+V ++ DFGAFV           ++GLVH
Sbjct: 608 IAAVDKEAGEKALNIIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKEGLVH 667

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ISQL+  RV +  DVVKEGD + VK + +D++G++KLS K
Sbjct: 668 ISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRK 707


>gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 705

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/696 (47%), Positives = 454/696 (65%), Gaps = 4/696 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE     R L +ETGR+ARQ+DGAVL  YGET+VL T V     K   DF PLTV+Y+E+
Sbjct: 6   VEKLIGNRALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTVDYREK 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GK PGG+ +RE RP++ EIL  R+IDR IRPLF   Y  E QV+  V+  D E+ P
Sbjct: 66  TYAAGKFPGGFFKREGRPSQKEILTMRLIDRPIRPLFPDTYFREVQVMSIVLSADKENDP 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +++MV ASAAL +S +PF  P    +V  I  ++++NP   E  Q S+D+ +SGT+DAV
Sbjct: 126 DILAMVGASAALSISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQSSMDIVISGTEDAV 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEM 244
           +MVE  A ++ E+ ++DAI+FGH   K +I    +L + C KE  IV  S+   +L EE+
Sbjct: 186 MMVEASAKEIPEEQMVDAIMFGHAAIKEIITLQHELIEKCGKEKQIVAPSRMNKELMEEI 245

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKV 302
            Q     +      P K  R + +D++   +++ +  E    +    EI ++FE ++  V
Sbjct: 246 KQKYYTAIVEKNLTPGKGYRKEALDEILAAIINEYCVEGVEDAPTPKEIKAIFETVETIV 305

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++ K +R D R  + +R I+ +VG+L R HGS+LF RG+TQAIVVVTLGT  DEQ 
Sbjct: 306 VREQIVSKGLRPDSRGLKDIRPITCEVGILPRVHGSALFTRGETQAIVVVTLGTTSDEQK 365

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           VD L       FM+ YNF P   GE   +  P RREIGHG LA RA+  VLP   +FPYT
Sbjct: 366 VDGLEDEYSKKFMLDYNFPPFCVGETKPLRGPGRREIGHGALAERALAEVLPPPNKFPYT 425

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
            R+VS+ITES+GSSSMA+VCG +LALMDAGVPI  PVAGIAMGLVK+ +   ILSDI G 
Sbjct: 426 TRVVSDITESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEENSVCILSDILGT 485

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA+ GRLHIL E+ KV+ + 
Sbjct: 486 EDHLGDMDFKVAGTAQGVTALQMDIKIAGITEKIMRDALAQAREGRLHILQELEKVIEKP 545

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++  + P++  + I P++I  +IG GGK I+ I E+TGAK+ I+DDGTV I+++    
Sbjct: 546 REKISVYAPKIVQIKINPEKIGMIIGPGGKNIKKIQEETGAKIEIEDDGTVIISATLGES 605

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E A+  I ++T   EV K YKG+V+ + ++GAFV      DGLVHIS+LS E V K  D
Sbjct: 606 AEKAKTWIENMTKEVEVGKTYKGKVLSIKEYGAFVEIIPGHDGLVHISELSYEYVEKAGD 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV+ G  + +K++  DD+ ++KLS K   + + +P+
Sbjct: 666 VVEVGQEIMIKVIGIDDQKRVKLSRKAALKESEQPL 701


>gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
           bacteriovorus HD100]
 gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio
           bacteriovorus HD100]
          Length = 697

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 328/696 (47%), Positives = 450/696 (64%), Gaps = 11/696 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TV     G+ + +ETGR+A+Q+DGA L + G  +VL T    +   +  DFFPLTV Y E
Sbjct: 4   TVTTSVGGKQITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASE-LDFFPLTVEYIE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGGY +RE++PT + +LI+R+IDR IRP+F + Y++ETQ++  V+  D    
Sbjct: 63  KFYATGKIPGGYFKREAKPTNDAVLIARLIDRPIRPVFPEGYRHETQIVATVLSADGAFP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             +++ + ASAAL  S +PF GP    Q+  ++GQ+V NP   + ++  +D+ V+GT++ 
Sbjct: 123 LEILASLGASAALHCSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDMIVAGTRNG 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL---AKMCAKEPIVIDSKDFSKLE 241
           +LMVE E   +SE   L A+ FGH    P++ A  +L   A   AK      S D +  +
Sbjct: 183 LLMVEGETKFISEADALAALKFGHQSLIPLLNAQDELREKAGSVAKRAFTAPSID-ADFK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-----SEHSSWNEGEIVSVFE 296
            +   +++  +  +  I EK  R    ++   +            E     + E+ S+ E
Sbjct: 242 AKAESLLRPKIAAALSIKEKQDRYAAANEAAAEAEKALLADIADKELLKQRKKELNSIVE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++ +  R+++LD+ VR+DGRD +TVR I+ +VG+L R HGS LF RG+TQ +  VTLGT
Sbjct: 302 DLKYQEARSMILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGT 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ VDSL G Q+  FM+HYNF P + GEV RM   SRREIGHG LA RAI  VLP  
Sbjct: 362 ADDEQMVDSLLGLQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERAIKAVLPDF 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSE+ ES+GSSSM TVC   +AL+DAGVP+   VAG+AMGL+K+GD   +L
Sbjct: 422 EKFPYTIRIVSEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAG+ +GITA+QMD+KI  +S  +M  AL QAK GR HILNEM 
Sbjct: 482 TDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEME 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           KV+   R Q+ EF PR+E + I PD+IR VIG GGKVIRGI E TG K+ I DDGT+ IA
Sbjct: 542 KVMKVPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIQDDGTINIA 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+     + A  MI  I    EV K YKG++VK+ +FGAFV       GL+HIS++S ER
Sbjct: 602 SADPEATKKAIAMINDIIAEAEVGKTYKGRIVKIAEFGAFVEILPNTQGLLHISEISNER 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V   SDV+KEG+ + VK+L+ D  G++KLS K + Q
Sbjct: 662 VRAVSDVLKEGEIIDVKVLEVDRSGRVKLSRKALLQ 697


>gi|172057841|ref|YP_001814301.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium
           sibiricum 255-15]
 gi|226702652|sp|B1YI57|PNP_EXIS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171990362|gb|ACB61284.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium
           sibiricum 255-15]
          Length = 739

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/690 (46%), Positives = 449/690 (65%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T   E  GRPL +E G++A+Q++GA L  YGET VLATVV  +  KD  DFFPLTVNY+
Sbjct: 6   QTFSTELGGRPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKD-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+L+RE RP EN IL SR+IDR IRPLF   ++++ QV   V+  D ++
Sbjct: 65  EKLYAAGKIPGGFLKREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDEDN 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           SP V +M+ AS AL +S +PF+GP+ G  +  +NG++++NP + +  +  +DL V+GT+ 
Sbjct: 125 SPEVAAMIGASIALSISDIPFDGPIAGVTIGRVNGEFIINPTMSQASESDIDLQVAGTKH 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AV MVE  A ++SE  +L+AI+ GH+  K +I    ++     +E        F + L  
Sbjct: 185 AVNMVEAGAKEVSEQAMLEAILLGHDVIKELIAFQEEIVAAVGQEKFAYTVASFDETLVN 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQA 300
            +      ++  +  + EK  R   I+++  K +  ++++ S       E+  V      
Sbjct: 245 RLKAEALAEVTTAVQVEEKQARDLAINEVISKYIDQYAADDSITEAQLAEVSGVLNKFVK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR    +R + +++GLL R HGS LF RG TQ + V TLG   D 
Sbjct: 305 TEVRRLITEDKVRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L       FM HYNF P + GE   M AP RREIGHG L  RA+ PVLP    FP
Sbjct: 365 QIIDGLGLKAEKRFMHHYNFPPFSVGEARPMRAPGRREIGHGALGERALLPVLPSETDFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSS A++CGS LA+MDAGVP+  PVAGIAMGL+K+G+++ IL+DI 
Sbjct: 425 YTIRLVSEVLESNGSSSQASICGSILAMMDAGVPLKAPVAGIAMGLIKEGENYSILTDIQ 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMDMKIGGI+  I+  AL+QA+ GRLHIL  M+ V++
Sbjct: 485 GMEDHLGDMDFKVAGTKDGVTALQMDMKIGGITRQILEEALEQARLGRLHILEHMNSVIA 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R++L ++ P++  + I PD+IR+VIG GGKVI GI+++TG K++ID DGTV IAS+  
Sbjct: 545 EPRVELSKYAPKIVTLKINPDKIRDVIGPGGKVINGIIDETGVKIDIDQDGTVFIASTDQ 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I  AR++I  I     + + + G V +V  FGAFV     +D LVHIS+L+ ERV +T
Sbjct: 605 DGINHARQLIEDIVREVVIGEEFDGTVRRVEKFGAFVELFKGKDALVHISELALERVGQT 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVVK GD + V++ + DD+G++  S KV+
Sbjct: 665 EDVVKLGDKLKVRVTEVDDKGRVNASHKVL 694


>gi|220916341|ref|YP_002491645.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254782701|sp|B8JFZ1|PNP_ANAD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219954195|gb|ACL64579.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 721

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/692 (46%), Positives = 460/692 (66%), Gaps = 20/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+ +A G+
Sbjct: 12  GKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGR 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           +PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+   V+++ 
Sbjct: 72  VPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLALT 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELE 191
            ASAAL +S +PF GP+ G +V  + GQ V NP L +  +  LD+ ++ ++DA++MVE  
Sbjct: 132 GASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASRDAIVMVEGG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC------AKEPIVIDSKDFSKLEEEMS 245
           A ++SE V+++A++FG    +P+++A   L          A EP     K+  +L  ++ 
Sbjct: 192 AQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARRAFEP----PKNDVELRAKVK 247

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFE 296
            +  E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   +E
Sbjct: 248 ALTWEKVKEAYGRNEKHDRYGRLSEIKKELLQALKDEAAGDAAKLATIALREKEIKGYYE 307

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++   +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TLGT
Sbjct: 308 DVKYDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGT 367

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P  
Sbjct: 368 AEDEQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPE 427

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   IL
Sbjct: 428 DQFPYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAIL 487

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKV GT +GIT++QMD+KIGG++ +I+  AL QA  GR HIL EM+
Sbjct: 488 SDILGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMA 547

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K LS  R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V IA
Sbjct: 548 KALSAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIA 607

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S +  ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS +R
Sbjct: 608 SPNQDKVEEAIKMIRGLTQEAEVGRIYLGTVRKIAEFGAFVEIFPGTDGLIHISELSDKR 667

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V   SDV+ EG+ V VK++  D  GKI+LS K
Sbjct: 668 VKSVSDVLSEGEEVMVKVISVDRSGKIRLSRK 699


>gi|197121578|ref|YP_002133529.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. K]
 gi|226702594|sp|B4UHG5|PNP_ANASK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|196171427|gb|ACG72400.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. K]
          Length = 721

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/688 (46%), Positives = 460/688 (66%), Gaps = 12/688 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+ +A G+
Sbjct: 12  GKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGR 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           +PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+   V+++ 
Sbjct: 72  VPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDVLALT 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELE 191
            ASAAL +S +PF GP+ G +V  + GQ V NP L +  +  LD+ ++ ++DA++MVE  
Sbjct: 132 GASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASRDAIVMVEGG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDS-KDFSKLEEEMSQMIK 249
           A ++SE V+++A++FG    +P+++A   L A    K     D  K+  +L  ++  +  
Sbjct: 192 AQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARRSFDPPKNDVELRAKVKALTW 251

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSVFEDIQA 300
           E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   +ED++ 
Sbjct: 252 EKVKEAYGRNEKHDRYGRLSEIKKELLQALKDEAAGDAAKLATIALREKEIKGYYEDVKY 311

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TLGT EDE
Sbjct: 312 DYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDE 371

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P   QFP
Sbjct: 372 QRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFP 431

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   ILSDI 
Sbjct: 432 YTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIAILSDIL 491

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT +GIT++QMD+KIGG++ +I+  AL QA  GR HIL EM+K LS
Sbjct: 492 GDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMAKALS 551

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V IAS + 
Sbjct: 552 APRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVSIASPNQ 611

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS +RV   
Sbjct: 612 DKVEEAIKMIRGLTQEAEVGRIYLGTVRKIAEFGAFVEIFPGTDGLIHISELSDKRVKSV 671

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SDV+ EG+ V VK++  D  GKI+LS K
Sbjct: 672 SDVLSEGEEVMVKVISVDRSGKIRLSRK 699


>gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR]
 gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
          Length = 735

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/700 (45%), Positives = 467/700 (66%), Gaps = 31/700 (4%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETGR+A+Q+ GAV   YG+T VL T       ++G DFFPLTV+Y+ER YAVG
Sbjct: 33  GGREMVIETGRMAKQATGAVFCRYGDTAVLVTATCSPEPREGIDFFPLTVDYEERLYAVG 92

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP+E  IL SR+IDR IRPLF K Y+N+  ++  V+  D +++P V ++
Sbjct: 93  KIPGGFIKREGRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPDVTAI 152

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
             ASAALM+SG+PF GP+    V  ++G++++NP + + + S + L V+GT+DAV+MVE 
Sbjct: 153 NGASAALMISGIPFLGPIGAVVVGRVDGKFIINPTIAQAEVSDMHLTVAGTKDAVIMVEA 212

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--------KEPIVIDSKDFSKLEE 242
            A ++ E+V+L+AI +GH E K ++  +    + C         +EP++        L+E
Sbjct: 213 GAKEVPEEVILEAISYGHEEIKKIVSFLEDFTRECLDAGVAKPRQEPVLF------LLDE 266

Query: 243 EMSQMIKE-------DLRVSCFIPEKYVRCKQ----IDDLKKKMVSYFSSEHSSWNEGEI 291
           E+ + ++E       D    C   EK    KQ    I++ K+++ +YF+ +    +E  +
Sbjct: 267 EIEKQVREYAYDKMFDTLKECI--EKRFPKKQREDFIENAKEEIKTYFAEKVFPEDEAAL 324

Query: 292 VSVFE---DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             V +    ++ +++R  ++  ++R+DGR  + VR I   VG+L RTHGS LF RG TQ 
Sbjct: 325 KHVADAVNKLEKEIMRKFIIQDRIRIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQV 384

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TLG   DEQ +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA
Sbjct: 385 LTVTTLGAVGDEQILDGLGVEESKRYMHHYNFPPYSVGEARFMRGPGRREIGHGALAERA 444

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + P++P   +FPYT+R+VSE+ ES+GSSSM +VCGS+L+LMDAGVPI +PV+G+AMGL+K
Sbjct: 445 LEPMIPSEDEFPYTIRLVSEVLESNGSSSMGSVCGSTLSLMDAGVPIKRPVSGVAMGLIK 504

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + D F +L+DI G EDHLG MDFKVAGT+ G+TA+QMD+KI GIS+ I+ +AL QA+ GR
Sbjct: 505 EEDAFAVLTDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKIAGISKEILQVALTQAREGR 564

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HIL++M +V+ + R ++  + PR+    I P++IRNVIG GGK I+ I+++TG K++I+
Sbjct: 565 MHILSKMLEVIDKPRPEISPYAPRIITFTIDPEKIRNVIGPGGKTIKKIIDETGVKIDIE 624

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDG V IA+  +     ARE+I  +T   EV K+Y G+VVK+MDFGAFV     ++GLVH
Sbjct: 625 DDGRVFIAAVDVEAGRRAREIIDKLTADVEVGKMYLGRVVKIMDFGAFVEVLPGKEGLVH 684

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ISQL+ +RV K  DVV  GD + VK+   D++G+I LS K
Sbjct: 685 ISQLAEQRVGKVEDVVSVGDEIMVKVTKIDEQGRINLSRK 724


>gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
           fermentans DSM 20731]
          Length = 690

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/689 (45%), Positives = 472/689 (68%), Gaps = 7/689 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+   ++ GR L +ETG+IA+Q++GAVL  YGET V+       + ++G DFFPLTV++
Sbjct: 1   MHSFSTDFGGRTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+LRRE RP E  IL SR+IDR IRP+F   Y N+ Q++   +  D +
Sbjct: 61  EEKMYAVGKIPGGFLRREGRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           ++P + +M+ AS AL +S +PFEGP+ G +V  I+GQ+++ P +++ + S L+L V+GT+
Sbjct: 121 NAPDIPAMIGASCALSISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSELNLAVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DA+LMVE  A ++SE+V+LDAI F H E K ++E   K+     K  +  D + ++  EE
Sbjct: 181 DAILMVEAGAKEVSEEVMLDAIWFAHGEIKKLVEFQEKIQAEVGKPKM--DFEVYTPPEE 238

Query: 243 ---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              E+    +  +  +   P+K  R K + + K++++++F+  +   NE +I  V   + 
Sbjct: 239 LAKEIEAYGEPKIHDALMDPDKLHRDKMVSEAKEEILAHFTELYPD-NEIDIAHVVAKLV 297

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +V R ++   K+R DGR  + VR IS +VGLL R HG SLF RG TQ +  + L    +
Sbjct: 298 KRVFRHIITVDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLRE 357

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +++L+G  +  ++ HYNF P + GE   + +P RREIGHG LA RA+ PV+P   +F
Sbjct: 358 AQNLETLAGDIQKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEF 417

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GSSSMA+ C S+L+LMDAGVPI  PV+G+AMGLVK+G++F IL+DI
Sbjct: 418 PYTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGENFTILTDI 477

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT  GITA+QMD+K+ G++++I+  AL QAK+GR  IL +M + +
Sbjct: 478 QGLEDANGDMDFKVAGTSKGITAIQMDIKVDGLTKDILQAALAQAKKGRAFILGKMLECI 537

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R QL ++ P++  + + P++I+++IG GGK+I+ IVE TGA+++I+DDGTV IA++ 
Sbjct: 538 AEPRKQLKKYAPKITTIKVNPEKIKDIIGPGGKIIKKIVEDTGAQIDINDDGTVYIAAAD 597

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA + I+ IT  PEV KIY G+V ++M+FGAFV F   R+GLVHISQL+ ERV K
Sbjct: 598 SESADAAIKTIQDITAEPEVGKIYTGKVTRIMNFGAFVEFMPGREGLVHISQLAKERVEK 657

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             DVV  GD + VKL++ D +G++ LS K
Sbjct: 658 VEDVVNVGDEIVVKLVEIDSKGRLNLSRK 686


>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
           DSM 5159]
 gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
           DSM 5159]
          Length = 790

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/703 (46%), Positives = 470/703 (66%), Gaps = 19/703 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H   IE AGR L +ETGR+A Q+DGAVL  YGETVVL TVV  +   +G DFFPLTV Y
Sbjct: 5   IHERSIEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+ RRE +P+E  IL +R+ DR IRPLF K Y+NE QVI  V+  D E
Sbjct: 65  EEKMYAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQE 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           + P V+S++ ASAAL LS +P+ GPV   ++  ++G+ V+NP   +  +  +D+ V+GT 
Sbjct: 125 NEPDVLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVVAGTA 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           DA+LMVE +AN++SED  ++A++  H E K ++    +L  +  K     +  ++  +L+
Sbjct: 185 DAILMVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQENVELK 244

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEGEIV 292
           ++++  + + LR + F P+K +R +    L+++++++F         + +       E+ 
Sbjct: 245 QQIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVPNEPLAIGTPQSGLPTAKEVG 304

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +F+ +  ++VR  +L++  R DGR  + +R+I  QVGLL R HGS+LF RG TQ + V 
Sbjct: 305 DLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVC 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+E+EQ++DSL   +   +M HYNF P +TGE+ R+  PSRR+IGHG LA RA+  V
Sbjct: 365 TLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERALLAV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPYT+R+VSE+  S+GS+SMA+VCGSSLALMDAGVPI KPVAG+AMGLV D   
Sbjct: 425 LPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVTDQTT 484

Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + IL+DI G ED LG MDFKVAGT  GITA+QMD+K+ GI+  IM  AL+QA+RGRL 
Sbjct: 485 GRYTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQARRGRLF 544

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++MS+V+   R ++  + PR+  + I P+QI  VIG GG+VIR I EQTG K++I++D
Sbjct: 545 ILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTKISIEED 604

Query: 591 GTVKIASSSLAEIEAAREMIRSI---TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           GTV I   S A  +AAR  +R I   T VPEV +I+ G+VV ++  GAFV     +DG +
Sbjct: 605 GTVFI---SAANEDAARRAVREIERLTRVPEVGEIFYGRVVTIIPSGAFVEILPGKDGFL 661

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           HIS+++ ERV    DV+K G  + V ++     GKI LS K +
Sbjct: 662 HISEIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKAL 704


>gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
 gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
          Length = 802

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 334/703 (47%), Positives = 468/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVG+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAVGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPAGFCDEVVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDE-DQGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI   G+Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFSTPIAGAKIGYIREEGRYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236
            SGT+ +V+MVE EA++LSED +L A+ FGH  C  V++ I + A+    + +      D
Sbjct: 180 YSGTKSSVVMVESEASELSEDEMLGALTFGHENCTQVLDLIEEFAEAAGPKDVAEFIPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS----WNEGEIV 292
             K+   +         V+     K  R  Q+D  ++ + S    +H S    + E E++
Sbjct: 240 IGKVVSGIGGDHSTRFSVAYGDNNKKTRVLQLDAARESLYSDLCEKHVSDGGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR+ +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRSRVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQA+ GRL I+
Sbjct: 480 YAVLSDIIGDEDHLGDMDFKVAGTKEGITALQMDMKIRGIGFDIIEKSLQQARDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++   D+  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701


>gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 700

 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/687 (45%), Positives = 465/687 (67%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ Q+I  ++  D + 
Sbjct: 64  ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++GQ+V+NP  D+ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +L+AI++ H   K ++E I ++ K     K  +++   D  +LE
Sbjct: 184 AIVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVKEVGVPKSEVILHEID-KELE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     + +  +   PEK  R   +D ++++++ YF  E+   N  +I  V  +I  +
Sbjct: 243 EKVRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEEYPD-NLADIDEVLYNIMKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D Q
Sbjct: 302 QMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI G
Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A++GRL+IL++M +V+ E
Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVIKE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PRV  M + P++IR++IG  GK I  I+ +TG K++I++DG + I +S L 
Sbjct: 542 PRKELSIYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVKIDIEEDGRLYITASDLK 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K  
Sbjct: 602 SGERAKQMIEAITKDITVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK GD + VK+ D D +G+I LS K
Sbjct: 662 DVVKVGDDILVKVTDIDKQGRISLSRK 688


>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
 gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
          Length = 706

 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/685 (45%), Positives = 463/685 (67%), Gaps = 4/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+WAGR L +E G++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVNY+ER Y
Sbjct: 10  IDWAGRKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQPKP-LDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D + S  +
Sbjct: 69  AVGKIPGGFIKREGRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  +S AL +S +PFEGP+ G QV  I+G++++NP +D+ ++  ++L V+GT+DA+ M
Sbjct: 129 AAMFGSSLALTVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEINLIVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE  A+++ E+ +L+AI+FGH E K +I    ++A    KE + ++     + +E E+  
Sbjct: 189 VEAGADEVPEETMLEAIMFGHEEIKRLISFQEEIAAQVGKEKMEVELYQIDQDIEAEVRG 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRT 305
           + +ED+  +  + EK+ R   I ++K  +++ F  + +   +  ++  V + +    VR 
Sbjct: 249 ICEEDMIKAIQVQEKHAREAAIKEVKDDVIAKFEEKEADEAQLKQVKQVLDKLVKGEVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++K+R DGR  + +R +++QVGLL RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 309 LITEEKLRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGDVQVIDG 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   +  P RREIGHG L  RA+ P++P    FPYT+RI
Sbjct: 369 LGLEESKRFMHHYNFPLFSVGETGPIRGPGRREIGHGALGERALEPIIPNEKDFPYTIRI 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL++ G+ + IL+DI G EDH
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIQSGEHYSILTDIQGMEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M   +SESR +
Sbjct: 489 LGDMDFKVAGTAKGVTALQMDIKIEGLSREILEEALQQAKSGRMHILDSMLSTISESRSK 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DG+V I+S+     + 
Sbjct: 549 LSQYAPKILTMHINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGSVFISSTDEEMNKK 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K  DVV 
Sbjct: 609 AKKIIEDIVREVEVGQLYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERIGKVEDVVS 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK+ + D +G++ LS K V
Sbjct: 669 IGDELLVKVTEIDRQGRVNLSRKAV 693


>gi|260889890|ref|ZP_05901153.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
           F0254]
 gi|260860496|gb|EEX74996.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
           F0254]
          Length = 699

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/709 (44%), Positives = 466/709 (65%), Gaps = 28/709 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+          + +K+ TG+IARQ+ G+V+   G T++L T    + +++GQDFFPLT
Sbjct: 1   MFEEKIYGFNLGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RE++P  +E+LISR+IDR IRPLF + + N   +++ V+ +
Sbjct: 61  VDYIEKFYASGKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D  + P  ++ +  SAAL LS +PF G V G  V YING+Y+LNP  ++  +  + L V+
Sbjct: 121 DEVNYPENLATIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A ++SE+V+L+AI+FGH           K+ ++CA++   ++  D  K
Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGH----------EKIKEICAEQDKFLEQFDVQK 230

Query: 240 LE---EEMSQMIKE-------DLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSS 285
            E   +E+   IKE       ++  +   P K  + + ID+L+    +K V    +E   
Sbjct: 231 YEFEKKEVDSEIKEFIDSFENEVEKAIMTPGKLEKYEAIDNLEIELFEKYVEKLENEDKE 290

Query: 286 WNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            +E    E    + D++ ++VR  +L K+ R DGR +  +R I  ++  L   HGS+LF 
Sbjct: 291 IDENLEKEFKKYYRDVEKRLVRDAILYKQYRADGRQTTEIRPIDVEIDTLPVPHGSALFT 350

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+VV TLG++EDEQ +D +    R  F +HYNF P + GE   M AP RRE+GHG
Sbjct: 351 RGETQALVVATLGSKEDEQIIDGMEDETRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHG 410

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P+T +FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI   VAGI
Sbjct: 411 NLAERALKYVMPETDKFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGI 470

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G+ F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL+
Sbjct: 471 AMGLIKEGETFTVLTDIQGLEDHLGDMDFKVAGTRDGITAIQMDIKIEGITREIMEIALR 530

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA  GRL I+++M  V+SE R Q+ E  P++EI+ I PD+I  +IG GGKVIR I+++TG
Sbjct: 531 QALEGRLFIIDKMEAVISEPRAQVAENAPKIEIIKINPDKIAGLIGPGGKVIRAIIDETG 590

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             ++I+DDGTV I       ++ A E+++  T   E+N+IY+G+V K+M FGAFV     
Sbjct: 591 VSIDIEDDGTVSIFGKESENMKKALELVKRQTQSVELNEIYEGKVTKLMKFGAFVEVLPG 650

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           ++GL+HIS++S +RV KT DV+KEG  V VK++  +   K  LSMK ++
Sbjct: 651 KEGLLHISEISNKRVEKTEDVLKEGQNVRVKVISMESEDKFNLSMKTLN 699


>gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13]
          Length = 715

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 316/690 (45%), Positives = 466/690 (67%), Gaps = 10/690 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D     I+WAGR L +E G++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 14  DKQVFSIDWAGRNLTVEVGQLAKQANGAVMVRYGDTAVLSTATASKEPKK-LDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 73  YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PF+GP+ G  V  IN ++V+NP +D+ ++  ++L V+GT
Sbjct: 133 NCSSEMAAMFGSSLALSVSDIPFQGPIAGVTVGRINDEFVINPNVDQLEKSDINLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A+++ E+V+L+AI+FGHNE K +I    ++ +   KE   +   +  K L
Sbjct: 193 KDAINMVEAGADEVPEEVMLEAIMFGHNEIKRLIAFQEEIVQAVGKEKTEVTLYEVDKNL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E E+  + +E +  +  + EK+ R   I ++K ++++ +  + +   E +++    +I +
Sbjct: 253 EHEIRALAEEKMTKAVQVFEKHAREAAIKEVKAEVLARYEEQEA---EADVLKQVNEILS 309

Query: 301 KVV----RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +V    R ++ + KVR DGR S+ +R ++++VGLL RTHGS LF RG TQA+ + TLG 
Sbjct: 310 MLVKEEVRRLITEDKVRPDGRKSDEIRPLASEVGLLPRTHGSGLFTRGQTQALSICTLGA 369

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P  
Sbjct: 370 LGDVQILDGLGIEEEKRFMHHYNFPLFSVGETGPMRGPGRREIGHGALGERALDPVIPSE 429

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + +L
Sbjct: 430 KDFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKKGEHYTVL 489

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKVAGT  G+TA+QMD+KI G+S +I+  ALQQAK GR+HIL+ M 
Sbjct: 490 SDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLSRDILEEALQQAKIGRMHILDSML 549

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + ESR +L  + P++ +M+I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+
Sbjct: 550 ATIDESRKELSPYAPKILMMSINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFIS 609

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S ++   + A+++I  I    +V +IY G+V ++  FGAFV     +DGLVHIS+L+ ER
Sbjct: 610 SINMEMNDKAKKIIEDIVREVQVGEIYMGKVKRIEKFGAFVELFSGKDGLVHISELAEER 669

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V +  D+VK G+ V VK+++ D +G++ LS
Sbjct: 670 VKQVEDIVKLGEEVLVKVMEIDKQGRVNLS 699


>gi|326565074|gb|EGE15267.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           46P47B1]
          Length = 665

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 332/670 (49%), Positives = 454/670 (67%), Gaps = 14/670 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++  ++   G +V++A VV   ++  GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQANSVLVHMGGVSVLVAVVVRPEAIA-GQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIV---IDS 234
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+     K+  V   I+ 
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEI 291
           +  ++L+E+ +  + E   ++     K  R  ++D+L  + +     E S   +    +I
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITV----KQDRYARLDELAAEALVLAGDETSDDYADKVAQI 295

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +FE ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV
Sbjct: 296 KELFETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVV 355

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  
Sbjct: 356 TTLGTTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQA 415

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP   +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+
Sbjct: 416 MLPAAERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGE 475

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HI
Sbjct: 476 RFAVLSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           LN M++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+G
Sbjct: 536 LNAMNEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNG 595

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T++I  +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ
Sbjct: 596 TIRIFGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQ 655

Query: 652 LSTERVAKTS 661
           +S ERV   S
Sbjct: 656 ISDERVENVS 665


>gi|322382340|ref|ZP_08056247.1| polynucleotide phosphorylase-like protein/polyadenylase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153693|gb|EFX46068.1| polynucleotide phosphorylase-like protein/polyadenylase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 699

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 334/703 (47%), Positives = 456/703 (64%), Gaps = 25/703 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++ AGRPL LETGR+A+Q++ +VL  YG+TVVL TV      KD  DFFPLTVNY+ER Y
Sbjct: 1   MDLAGRPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKD-LDFFPLTVNYEERLY 59

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QV+  VM  D E SP +
Sbjct: 60  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 119

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M   SAAL +S +PF GP+ G  V  I+G++V+NP  ++   S + L V+GT+DA++M
Sbjct: 120 AAMTGVSAALSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDIHLTVAGTKDAIMM 179

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE  A ++ E+V+L+AI+FGH + K          K+ A +   ++     K+E ++ Q+
Sbjct: 180 VEAGAAEVPEEVMLEAIMFGHEQIK----------KIVAVQEQFVEEAGVPKMEVQLHQV 229

Query: 248 IKE-DLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSV 294
            +E + +V  F          +PEK+ R + ID +  +   +F+S  E       ++  V
Sbjct: 230 DEEINAKVREFASAKMIEAIQVPEKHARQEAIDLVSAETEEHFASLLEDDPAKLKDVKEV 289

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             DI  + VR ++  +KVR DGR  + +R I   + LL RTHGS LF RG TQA+ V TL
Sbjct: 290 LHDIVKEEVRRLITHEKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTL 349

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D Q +D L   +   FM HYNF P + GE   + AP RREIGHG L  RAI  V+P
Sbjct: 350 GALGDVQILDGLDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGARAIEQVIP 409

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GS+S A++C S LALMDAGVPI  PVAGIAMGL+KDG  F 
Sbjct: 410 SEEEFPYTIRLVSEVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKDGQHFS 469

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDHLG MDFKVAGT  G+TA+QMD+KI GI  +I+  AL QAK GR+ IL +
Sbjct: 470 ILTDIQGMEDHLGDMDFKVAGTAKGVTALQMDIKINGIDRDILHQALTQAKEGRMFILEK 529

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   +S+ + +L  + P++  M+I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V 
Sbjct: 530 MLSRISDPKKELSPYAPKILTMSIHPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVF 589

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IASS+    + A+E+I  I     V + Y G V ++  FGAFV     ++GLVHISQLS 
Sbjct: 590 IASSNEQMNQKAKEIIEGIVREVVVGETYLGTVKRIEKFGAFVEVLPNKEGLVHISQLSI 649

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERVAK  DVV  GD + VK+ + D++G+I LS K    N  KP
Sbjct: 650 ERVAKVEDVVSIGDKITVKVTEIDNQGRINLSRKATLVNQEKP 692


>gi|229544442|ref|ZP_04433500.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
 gi|229324927|gb|EEN90604.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
          Length = 704

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/691 (46%), Positives = 464/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D HT  I+WAGRPL +E G++A+Q++GA L  YGET VL+T    +  K+  DFFPLTVN
Sbjct: 4   DKHTYTIDWAGRPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPKN-VDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + +P + +M+ +S AL +S +PFEGP+ G  V  ++G++++NP +++ ++  + L V+GT
Sbjct: 123 DCTPEMAAMLGSSLALSVSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDIHLTVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A ++ E+V+L+AI+FGH E K +I    K+     KE + ++  +   +L
Sbjct: 183 KDAINMVEAGAKEVPEEVMLEAIMFGHEEIKRLIAFQEKIVAEIGKEKMAVELFELDEEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            E++S M ++ +  +  + EK  R + I  +  ++++ F +E +      ++  +  DI+
Sbjct: 243 VEKVSGMCRKKMIEAIQVHEKKAREEAIRKVGDEVLAQFEAEEADEETVKQVKQILHDIE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++   K+R DGR  + +R +S++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRKLITVDKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLGIEESKRFMHHYNFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPDEKEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAG+PI  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGIPIKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQA++GR+ IL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIAGLSREILEEALQQARKGRMQILDHMMSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S++R  L  + P++  M I PD+IR+VIG  GK I  I+++TG K++I+ DGT+ I+S+ 
Sbjct: 543 SKTRDHLSVYAPKILTMTIHPDKIRDVIGPSGKQINKIIDETGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A+++I  I    EV K+Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 EEANNKAKKLIEDIVREVEVGKVYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVRK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ D D  G+I LS K V
Sbjct: 663 VEDVVKIGDEILVKVTDIDSHGRINLSRKAV 693


>gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           RF122]
 gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           RF122]
          Length = 698

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERIKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R+ K  DV
Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K GDT+ VK+ + D +G++  S + +++
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|257126208|ref|YP_003164322.1| polynucleotide phosphorylase/polyadenylase [Leptotrichia buccalis
           C-1013-b]
 gi|257050147|gb|ACV39331.1| Polyribonucleotide nucleotidyltransferase [Leptotrichia buccalis
           C-1013-b]
          Length = 700

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/710 (44%), Positives = 465/710 (65%), Gaps = 28/710 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+          + +K+ TG+IARQ+ G+V+   G T++L T    + +++GQDFFPLT
Sbjct: 1   MFEEKIYGFNLGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RE++P  +E+LISR+IDR IRPLF + + N   +++ V+ +
Sbjct: 61  VDYIEKFYASGKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D  + P  ++++  SAAL LS +PF G V G  V YING+Y+LNP  ++  +  + L V+
Sbjct: 121 DEVNYPENLAIIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A ++SE+V+L+AI+FGH           K+ ++CA++   ++  D  K
Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGH----------EKIKEICAEQDKFLEQFDVQK 230

Query: 240 LEEEMSQM---IKE-------DLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSS 285
            E E  ++   IKE       ++  +   P K  + + ID+L+    +K V    +E   
Sbjct: 231 YEFEKKEVDPEIKEFIDGFENEVEKAIMTPGKLEKYEAIDNLEIELFEKYVQKLENEDKE 290

Query: 286 WNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            +E    E    + D++ ++VR  +L K+ R DGR +  +R I  ++  L   HGS+LF 
Sbjct: 291 IDENLEKEFKKYYRDVEKRLVRDAILYKQYRADGRQTTEIRPIDVEIDTLPVPHGSALFT 350

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+VV TLG++EDEQ +D +    R  F +HYNF P + GE   M AP RRE+GHG
Sbjct: 351 RGETQALVVATLGSKEDEQIIDGMEDETRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHG 410

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P+  +FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI   VAGI
Sbjct: 411 NLAERALKYVMPEQDKFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGI 470

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+GD F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL+
Sbjct: 471 AMGLIKEGDTFTVLTDIQGLEDHLGDMDFKVAGTKDGITAIQMDIKIEGITREIMEIALR 530

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA  GRL I+++M  V+SE R ++ E  P++EI+ I PD+I  +IG GGKVIR I+++TG
Sbjct: 531 QALEGRLFIIDKMEAVISEPRAEVSENAPKIEILKISPDKIAGLIGPGGKVIRAIIDETG 590

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             ++I+DDGTV I       ++ A E+++  T   E+N IY+G+V K+M FGAFV     
Sbjct: 591 VSIDIEDDGTVSIFGKESENMKKALELVKRQTQSVELNTIYEGKVTKLMKFGAFVEVLPG 650

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           ++GL+HIS++S +RV KT D +KEG  V VK++  ++  K  LSMK + Q
Sbjct: 651 KEGLLHISEISNKRVEKTEDALKEGQNVRVKVISMENEDKFNLSMKALKQ 700


>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 698

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDEALVERVKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R+ K  DV
Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K GDT+ VK+ + D +G++  S + +++
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus N315]
 gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           04-02981]
 gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O11]
 gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O46]
 gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 698

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERVKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R+ K  DV
Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K GDT+ VK+ + D +G++  S + +++
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 738

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 335/710 (47%), Positives = 463/710 (65%), Gaps = 28/710 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+   GR L LETGR+A+Q+ GAVL TYG+T+VL T    ++ +D  DFFPLTV+Y+ER 
Sbjct: 10  EMSLGGRKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNTRD-IDFFPLTVDYEERL 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RP+E  IL  R+IDR IRPLF K  +NE QV+  V+  D +++P 
Sbjct: 69  YAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVLSVDQDNAPE 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ ASAAL +S +P + P+ G  V  ++GQ+V+NP + + + S + L V+GT DAV+
Sbjct: 129 IAAMIGASAALHISKIPLKKPIGGVIVGRVDGQFVINPVVRQAENSDMHLVVAGTDDAVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAI-----SKLAKMCAKEPIVIDSKDFSKLE 241
           MVE  A ++ ED +L+AI+FGH   K V++ I     + L    A+E +VI   ++    
Sbjct: 189 MVEAGAKEVPEDQILEAIMFGHEVVKEVVKFIDDFRVAALELGLAQEKMVIPEPEYDPAI 248

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----------EHSSWNEGEI 291
            E+     E++     I E  + C +    KK   +Y             E    NE +I
Sbjct: 249 VEVVLPKAEEV-----IREAVLYCSREKLTKKDREAYMEEVMTNLQTSFLEQFPENEKDI 303

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             + E  + KVVR ++   K+R+DGR  + VR IS +VG+L RTHGS LF RG TQ + V
Sbjct: 304 KDLIEKAEKKVVRRIITHDKLRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTV 363

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG   DEQ +D L   +   +M HYNF P +TGE   M +P RREIGHG LA RA+ P
Sbjct: 364 ATLGCVSDEQILDGLGLEETKRYMHHYNFPPFSTGETKPMRSPGRREIGHGALAERALEP 423

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           ++P    FPYTLR+VSE  ES+GS+SM +VCGS+LALMDAGVPI  PVAG+AMGL+ + D
Sbjct: 424 MIPPEEVFPYTLRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIMEED 483

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+  +   AL QA RGR+HI
Sbjct: 484 QFTVLTDIQGLEDHLGDMDFKVAGTANGITALQMDIKIPGITREVFEQALAQAYRGRMHI 543

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M +V+   R ++  + P +    I PD+IR+VIG GGK+I+ +VE+TGA ++I+DDG
Sbjct: 544 LSKMLEVIPAPRPEISPYAPSIIRTTIHPDKIRDVIGPGGKIIKKLVEETGADIDIEDDG 603

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDG 645
            V IA+    + + A E+I+SIT   EV K+YKG+V +V DFG FV           ++G
Sbjct: 604 RVFIAAVDREKGKRALEIIQSITSEVEVGKLYKGKVTRVTDFGCFVEVIPGVLGLPGKEG 663

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           LVHISQL  +RV KT DVVKEGD + VK + +D +G++KLS K   ++ G
Sbjct: 664 LVHISQLDFQRVEKTEDVVKEGDVITVKAIGYDHQGRLKLSRKEALRDMG 713


>gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 698

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERIKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R+ K  DV
Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K GDT+ VK+ + D +G++  S + +++
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TW20]
          Length = 698

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 314/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DA+ MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERVKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R+ K  DV
Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K GDT+ VK+ + D +G++  S + +++
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
 gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
          Length = 690

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 316/691 (45%), Positives = 460/691 (66%), Gaps = 7/691 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EIE  GR + +E G++A+Q++GA L  YG+TVVL T     + ++G DFFPLTV+Y
Sbjct: 1   MQSFEIELGGRNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF + ++N+ Q++  V+  D +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P + +M+ AS AL +S +PF GP+ G +V YING +V+NP+ +E   S L+L V+G+ 
Sbjct: 121 NPPEIAAMLGASCALTVSDIPFMGPIAGVRVGYINGAFVINPKEEERAVSELNLTVAGSY 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSK 239
           DAV+MVE  AN+LSE++VLDAI+FGH E + ++E    +   C KE   P +    +  +
Sbjct: 181 DAVMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSACGKEKQIPAIFAVSE--E 238

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++    +E L  +    +K  R   I  +K + + +F  E+    + EI  +   I+
Sbjct: 239 LEEKIRAYAEERLDAATRNEDKLGRDADIAAIKSETMEHFIVEYPEQAK-EISQILYKIE 297

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR ++  +K+R DGR    VR +S +VG+L RTHGS LF RG TQ + V TLG+  D
Sbjct: 298 KGIVRHMITHEKIRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGD 357

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P    F
Sbjct: 358 EQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDF 417

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL+DI
Sbjct: 418 PYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTDI 477

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL QAK GR  IL +M + +
Sbjct: 478 QGMEDALGDMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILGKMLECI 537

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            +   +L  + PRVE + I  D+IR+VIG GGKV+R I+++TG  ++I +DG + I S +
Sbjct: 538 DKPAEELSPYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVDIDIHEDGNIFITSPN 597

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++ AR+MI  I    EV +IY G+V + + FGAFV     ++GL HISQL+  RV  
Sbjct: 598 TEAMDRARKMIEDIVRDVEVGEIYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHRVES 657

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK+++ D++G+I +S KV+
Sbjct: 658 VEDVVHIGDELQVKVIEIDEKGRINVSHKVL 688


>gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
 gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC
           14580]
 gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580]
 gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
          Length = 705

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 316/689 (45%), Positives = 460/689 (66%), Gaps = 4/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVNY+
Sbjct: 6   HVFSIDWAGRKLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKT-VDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  ++ ++++NP L++ ++  + L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDNKFIINPTLEQLEKSDIHLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I   +  S L+E
Sbjct: 185 AINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEITLYEIDSDLKE 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAK 301
           ++  M + +L  +  + EK+ R   I ++K ++++ F  E        ++  +   +   
Sbjct: 245 KVRGMAESNLLKAIQVHEKHAREDAISEVKNEVLAKFEEEEHDEETLKQVKDILSQLVKN 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   D Q
Sbjct: 305 EVRRLITEEKVRPDGRAVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ P++P    FPY
Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPIVPSEKDFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK GD++ +L+DI G
Sbjct: 425 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDNYTVLTDIQG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL  M   L+E
Sbjct: 485 MEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILESMLSTLAE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR +L  + P++  M+I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+  +
Sbjct: 545 SRKELSPYAPKILTMSINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K  
Sbjct: 605 MNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVELFSGKDGLVHISELALERVGKVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+ + D +G++ LS K V
Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 698

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/689 (45%), Positives = 463/689 (67%), Gaps = 7/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPVERDEALVERVKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R+ K  DV
Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K GDT+ VK+ + D +G++  S + +++
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum
           thermopropionicum SI]
 gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum
           thermopropionicum SI]
          Length = 734

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 332/708 (46%), Positives = 466/708 (65%), Gaps = 33/708 (4%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T EI   GRP+ LETGR+A Q+ GAV   YG+T VL T     +++ G DFFPLTV+Y+E
Sbjct: 8   TREIIVGGRPMILETGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFPLTVDYEE 67

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVGKIPGG+++RESRP+E  IL  R+IDR IRPLF K  +NE QVI  ++  D +++
Sbjct: 68  RFYAVGKIPGGFIKRESRPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQDNA 127

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +MV ASAAL +S +P + P+ G  V  ++G++V+NP L + + S + L V+GT+DA
Sbjct: 128 PEIAAMVGASAALHISEIPLKFPIGGVIVGRVDGRFVINPVLAQAEKSDMHLVVAGTKDA 187

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-----LAKMCAKEPIVIDSKD--- 236
           V+MVE  A ++ E+V+L+AI FGH   K ++  I +     L    AKE +VI+  +   
Sbjct: 188 VMMVEAGAKEVPEEVILEAISFGHETVKEIVAFIERYREEALEMGLAKEKMVIEVAEPDP 247

Query: 237 ----------FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
                       KL+  + + + E L        K  R   ++++K +++  F +++   
Sbjct: 248 VLVEAVTGPATEKLDGVLRRCVNERL-------SKQERDSLLNNIKDELMQKFLADYPE- 299

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E  I  + + I+ K+VR ++ ++ +R+DGR    VR IS +VG+L R HGS LF RG T
Sbjct: 300 QESLIKDLLDSIEKKLVRRMITEEGLRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQT 359

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + VVTLGT  +EQ +D L   +   FM HYNF P +TGE   + +P RREIGHG LA 
Sbjct: 360 QILSVVTLGTVSEEQILDGLGVEESKRFMHHYNFPPYSTGETRPLRSPGRREIGHGALAE 419

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+  V+P   +FPYT+RIVSE  ES+GS+SM +VCGS+LALMDAGVPIS PVAG+AMGL
Sbjct: 420 RALAAVIPGEEEFPYTIRIVSEALESNGSTSMGSVCGSTLALMDAGVPISAPVAGVAMGL 479

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+GD+F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  +   AL QA  
Sbjct: 480 IKEGDNFTVLTDIQGFEDHLGDMDFKVAGTAKGITALQMDIKIPGITREVFEKALAQAYE 539

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR+HILN+M +VL   R +L    PR+  + I PD+IR+VIG GGKVI+ IVE+TGA+++
Sbjct: 540 GRMHILNKMLEVLPAPRPELSPHAPRIIHITIDPDKIRDVIGPGGKVIKKIVEETGAEID 599

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG----- 641
           I+DDG V IA+    +   A+E+I ++T   +  +IY G+V ++ DFG FV         
Sbjct: 600 IEDDGRVFIAAVDQEKGRKAQEIIETLTKEVQTGEIYTGRVTRITDFGCFVEIIPGVLGM 659

Query: 642 -ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             ++GLVHISQL+  RV +  DVVKEGD + VK+  +D +G++KLS K
Sbjct: 660 QGKEGLVHISQLAHHRVNRVEDVVKEGDVILVKVTGYDSQGRLKLSKK 707


>gi|289550934|ref|YP_003471838.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 698

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/687 (45%), Positives = 462/687 (67%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ +Q  LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH+E K ++E   ++       K   +   +D + +    + 
Sbjct: 190 EAGASEITEQEMLEAIFFGHDEIKRLVEFQQQIVDHLQPVKSEFIPVERDEALVSRVQAL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R   +D+LK ++ + F  E    NE    E+ ++  D+  + V
Sbjct: 250 TEEKGLKETVLTFDKKQRDDNLDELKAEIAAEFIDEADPENELLINEVHAILNDLVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L R HGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   Q   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T++FPYT+
Sbjct: 370 DGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDTSKFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + +   R
Sbjct: 490 DALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQTIDHPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+VEIM I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 AELSAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIYIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ++E+I +IT   EV +IY  +V ++  +GAFV     +D L+HISQ+S +R+ K  DV
Sbjct: 610 NRSKEIIEAITREAEVGQIYDAKVKRIEKYGAFVEIFSGKDALLHISQISKDRINKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +K GDT+ VK+ + D +G++  S KV+
Sbjct: 670 LKIGDTIKVKITEIDKQGRVNASHKVL 696


>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
          Length = 702

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 323/689 (46%), Positives = 462/689 (67%), Gaps = 11/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E AGRP  +ETG++A+Q++GAVLA YG+TVVL T    +  ++G DF PLTV+Y+ER YA
Sbjct: 7   EIAGRPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERLYA 66

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE +P+E  IL +R+IDR +RPLF K ++N+ Q+I  ++  D  ++P VV
Sbjct: 67  VGKIPGGFIKREGKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSVDQGNTPDVV 126

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           ++  AS AL +S +PFEGPV    V  ++G +++NP +++ ++  L L V+GT+DA+LMV
Sbjct: 127 AINGASIALCISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSRLRLVVAGTKDAILMV 186

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV-IDSKDFSKLEEE 243
           E  A++++E+ +++AI+FGH E K ++    E I+K+ K   + P++ ID +    LE+ 
Sbjct: 187 EAGADEVTEEEMINAILFGHEEIKKIVKFQEEIIAKVGKPKMEVPVMEIDPE----LEKA 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           + +  ++++  +  I +K  R   +  + +  + +F   +    E EI  V   I  + V
Sbjct: 243 VREYARDEILKAIRIYDKQEREAYLQKINEDTLLHFQDIYPE-KEKEIAEVLYSILKEEV 301

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++  + +R DGR S  +R IS +VG+L RTHGS LF RG TQ + V TLG   D Q +
Sbjct: 302 RNMITYEGIRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQIL 361

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF P +TGE   +  P RREIGHG LA RA+ P++P    FPYT+
Sbjct: 362 DGLELEESKRFMHHYNFPPYSTGETRMLRGPGRREIGHGALAERALEPMIPPEETFPYTI 421

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+  S+GS+SMA+VCGS+LALMDAGVPI  PVAGIAMGL+K  D   ILSDI G E
Sbjct: 422 RLVSEVLSSNGSTSMASVCGSTLALMDAGVPIKAPVAGIAMGLIKQDDKVTILSDIQGIE 481

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI GI   I+  AL+QA+ GRL+IL +M   +S  R
Sbjct: 482 DFLGDMDFKVAGTSKGITAIQMDIKIKGIDAEILKKALEQAREGRLYILEKMLATISSPR 541

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + PR+    I PD+IR VIG GGK+I  I+ +TG K++I+DDG + IA+ + A  
Sbjct: 542 PELSPYAPRIFTTVIDPDKIREVIGPGGKMINKIIAETGVKIDIEDDGRIYIAAPNEAAG 601

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A +MI++IT   EV K+Y G+V+++ +FGAFV     ++GLVHIS+L+  RV K  DV
Sbjct: 602 EKALDMIKNITQDVEVGKVYLGKVLRITNFGAFVEILPGKEGLVHISKLAKGRVKKVEDV 661

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           VK GD + VK+ D D +G+I LS K V Q
Sbjct: 662 VKIGDEILVKVTDIDKQGRINLSHKDVFQ 690


>gi|307264921|ref|ZP_07546483.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920179|gb|EFN50391.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 700

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/687 (45%), Positives = 462/687 (67%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++TG++A+Q++GA    YG+TVVL TV   +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLLVQTGKVAQQANGAAWVKYGDTVVLVTVCASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D + 
Sbjct: 64  ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +LDAI++ H   K +I  I ++ K     K  +++   D  +LE
Sbjct: 184 AIVMVEAGAKEVPEETMLDAIMYAHEYIKQIIGFIEEIVKEVGVPKSEVILHEID-KELE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I  +
Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D Q
Sbjct: 302 QMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +   +   +M HYNF P + GEV  +  P RREIGHG L  RA+ PV+P   +FPY
Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALGERALEPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI G
Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+ E
Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S L 
Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K  
Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK GD + VK+ D D  G+I LS K
Sbjct: 662 DVVKVGDNILVKVTDIDKLGRISLSRK 688


>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           SK119]
 gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           SK119]
          Length = 698

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/694 (46%), Positives = 465/694 (67%), Gaps = 17/694 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G YV+NP L++ + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246
           E  A++++E  +L+AI FGH E K ++    ++ +    +P+    K+F  +E  EE+ Q
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVEHI--QPV---KKEFIPVERDEELVQ 244

Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI 298
            +K     + L+ +    +K  R + +D LK ++ + F  E    NE    E+ ++  D+
Sbjct: 245 RVKSLTEEKGLKETVLTFDKQQRDENLDALKAEIATEFVDEADPENELLIDEVYAILNDL 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   
Sbjct: 305 VKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T +
Sbjct: 365 DYQLIDGLGPEIEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTE 424

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+D
Sbjct: 425 FPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTD 484

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + 
Sbjct: 485 IQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQT 544

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P+VEIM I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I + 
Sbjct: 545 IDQPRSELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAV 604

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I  ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S +R+ 
Sbjct: 605 DQEMINRAREIINEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDRIN 664

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           K  DV+K GDT+ VK+ + D +G++  S KV+D+
Sbjct: 665 KVEDVLKIGDTIEVKITEIDKQGRVNASHKVLDE 698


>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
           1942]
 gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
           1942]
          Length = 705

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 316/689 (45%), Positives = 459/689 (66%), Gaps = 4/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL++    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QVI  VM  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  ++ Q+++NP +D+ ++  + L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDIHLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A+++ E+ +L+AI+FGH E K +I    ++     KE   I   +  ++L +
Sbjct: 185 AINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLYEIDAELSD 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301
           ++  + +EDL  +  + EK+ R   I+++K  +V+ F  E H      ++      +   
Sbjct: 245 KVKALAEEDLLKAIQVHEKHAREDAINEVKNTVVAKFEEEEHDDDIIKQVKQTLSKLVKN 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ ++KVR DGR  + +R +S++VG+L RTHGS LF RG TQA+ + TLG   D Q
Sbjct: 305 EVRRLITEEKVRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPY
Sbjct: 365 ILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI G
Sbjct: 425 TIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDIQG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL+ M   L E
Sbjct: 485 MEDALGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKKGRMEILSSMLNTLGE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           +R +L ++ P++  MAI PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+  +
Sbjct: 545 ARKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTDES 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K  
Sbjct: 605 NNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+ + D +G++ LS K V
Sbjct: 665 DVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 698

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/694 (46%), Positives = 465/694 (67%), Gaps = 17/694 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G YV+NP L++ + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246
           E  A++++E  +L+AI FGH E K ++    ++ +    +P+    K+F  +E  EE+ Q
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVEHI--QPV---KKEFIPVERDEELVQ 244

Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI 298
            +K     + L+ +    +K  R + +D LK ++ + F  E    NE    E+ ++  D+
Sbjct: 245 RVKSLTEEKGLKETVLTFDKQQRDENLDALKAEIATEFVDEADPENELLIDEVYAILNDL 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   
Sbjct: 305 IKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T +
Sbjct: 365 DYQLIDGLGPEIEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTE 424

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+D
Sbjct: 425 FPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTD 484

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + 
Sbjct: 485 IQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQT 544

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P+VEIM I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I + 
Sbjct: 545 IDQPRSELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAV 604

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I  ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S +R+ 
Sbjct: 605 DQEMINRAREIINEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDRIN 664

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           K  DV+K GDT+ VK+ + D +G++  S KV+D+
Sbjct: 665 KVEDVLKIGDTIEVKITEIDKQGRVNASHKVLDE 698


>gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 698

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 314/689 (45%), Positives = 462/689 (67%), Gaps = 7/689 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEALVERVKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R+ K  DV
Sbjct: 610 NRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +K GD + VK+ + D +G++  S + +++
Sbjct: 670 LKIGDKIEVKITEIDKQGRVNASHRALEE 698


>gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 700

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/687 (45%), Positives = 460/687 (66%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++ G++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D + 
Sbjct: 64  ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +LDAI++ H   K ++E I  + K     K  +++   D   LE
Sbjct: 184 AIVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEID-KDLE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I  +
Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++++R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D Q
Sbjct: 302 QMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI G
Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+ILN+M +V+ E
Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILNKMLEVIKE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S L 
Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K  
Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK GD + VK+ D D  G+I LS K
Sbjct: 662 DVVKVGDDILVKVTDIDKLGRISLSRK 688


>gi|315185936|gb|EFU19700.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6578]
          Length = 709

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 324/693 (46%), Positives = 466/693 (67%), Gaps = 3/693 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V I+  GR L L TG++ARQ++GAV A YG T VLAT      +K+  DF PL+V+Y 
Sbjct: 3   HSVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP E EIL+SR+IDR +RPLFSK +K E Q+I   +  D  +
Sbjct: 63  EKYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           +P VV++VAASAA+ +S +PF+GPV   +V  ++G +V+NP L++ + S LD+ V+GT +
Sbjct: 123 TPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            + MVE  A ++SED +++AI         + +A  +L++   K+ + +  ++   L++E
Sbjct: 183 GITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELSERAGKKKLPLQEEESFPLKDE 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +    +  L  +CF+  K  R K I   ++++ +YF        E    +V E+++ ++V
Sbjct: 243 VIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGERIPDEQERAFNAVIEELEREIV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L++ +R DGR  E +R I+ +VG+L RTHGS+LF RG+TQA+ + TLGT  DEQ +
Sbjct: 303 RSSILERGIRTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALAITTLGTVFDEQIM 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L G +R +FM+HYNF P + GEV R+    RREIGHG LA RA+  VLP    FPYTL
Sbjct: 363 DDLEGDKRENFMLHYNFPPFSVGEVGRL-YTGRREIGHGHLAHRALEAVLPSKDDFPYTL 421

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMATVCGS+L+L++AGVPI KPVAGIAMGLV DG+  +ILSDI G+E
Sbjct: 422 RVVSEILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSDILGEE 481

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT+ GITA QMD+KI  I    M  AL+QA+RGRLHIL  M++ +SE R
Sbjct: 482 DHFGDMDFKVAGTEEGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPR 541

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L ++ PR+   A+ P++I  +IG  GK IR I E     +NIDDDG++ I S    + 
Sbjct: 542 PELSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISETFDVTINIDDDGSIVIYSKQKEKA 601

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A+  I  + + PEV K+Y G+V +++DFGAF+ F   R+GL HISQ+S +R+    DV
Sbjct: 602 EQAKAYIDKMLEEPEVGKVYTGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHDV 661

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VK    V V++L+ D  G++ L+M ++D++  K
Sbjct: 662 VKLNQEVPVRILEIDRLGRVNLTM-LIDESMAK 693


>gi|262039265|ref|ZP_06012583.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
           goodfellowii F0264]
 gi|261746759|gb|EEY34280.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
           goodfellowii F0264]
          Length = 711

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 323/708 (45%), Positives = 461/708 (65%), Gaps = 28/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T       + +KL TG+IARQ+ G+V+   G TV+L T    + +K+GQDFFPLT
Sbjct: 1   MFDERTYGFNLGTQQVKLSTGKIARQAGGSVMVQCGGTVLLVTATRSKDVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RESRP+ +EILISR++DR IRPLF + + N   ++I V+ +
Sbjct: 61  VDYIEKFYASGKFPGGFVKRESRPSTDEILISRLVDRPIRPLFPEGFLNSVHIVITVVSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  ++ +  S AL LS +PF G V G  V Y++G+YVLNP  ++ ++  + L V+
Sbjct: 121 DEINQPENLATIGVSVALGLSDIPFAGTVAGVTVGYVDGEYVLNPTAEQLEKSEIHLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A ++SE+V+L+AI+FGH   K          ++CA++   +   D  K
Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGHERIK----------EICAEQDKFLSQFDVKK 230

Query: 240 LE---EEMSQMIKE-------DLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSS 285
            E   +E++  IKE       ++  +   P K  + + ID+L+    +K V+   SE   
Sbjct: 231 YEFEKKEVAPEIKEFIDSFEKNVEEAVMTPGKLEKYEAIDNLEIELFEKYVAKLESEAKE 290

Query: 286 WNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            +E    E  + + +I+ KVVR  +L KK R DGR +  +R +  +V  L   HGS+LF 
Sbjct: 291 IDENLEKEFKNYYREIEKKVVRDAILYKKYRADGRTTTEIRPLDVEVDTLPVPHGSALFT 350

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V VTLG++ DEQ VD +    R  F +HYNF P + GE   + AP RRE+GHG
Sbjct: 351 RGETQALVTVTLGSKADEQIVDGIEDESRKKFFLHYNFPPYSVGEAGFLRAPGRRELGHG 410

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P    FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI   VAGI
Sbjct: 411 NLAERALKYVMPDQETFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGI 470

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+GD F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL+
Sbjct: 471 AMGLIKEGDTFTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKIEGITREIMDIALK 530

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA  GR  I+++M +V+SE R ++ E  P++E+M I P +I  +IG  GKVI+ I+E+TG
Sbjct: 531 QALEGRYFIIDKMEEVISEPRPEIAENAPKIELMKIDPSKIAGLIGPAGKVIKAIIEETG 590

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             ++I+DDG+V I       ++ A E+++  T   E+N IY G+V K+M FGAFV     
Sbjct: 591 VSIDIEDDGSVSIFGKDPEMMKKAIELVKRQTQSVELNGIYDGKVTKLMKFGAFVEVLPG 650

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+HIS++S +RVAK  DV+KEG  + VK++  +D  K  LSMK +
Sbjct: 651 KEGLLHISEISHKRVAKVEDVLKEGQEIKVKVITMEDENKFNLSMKAL 698


>gi|293374237|ref|ZP_06620565.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
           PC909]
 gi|325845651|ref|ZP_08168935.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
 gi|292647070|gb|EFF65052.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
           PC909]
 gi|325488349|gb|EGC90774.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
          Length = 701

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 319/691 (46%), Positives = 463/691 (67%), Gaps = 4/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M + H    E AGRPL  E G +A+Q++ +VL  YG+TVVL+T V  +  KD  DFFPLT
Sbjct: 1   MSEKHVYSFELAGRPLSFEIGELAKQANASVLVRYGDTVVLSTCVASKEPKD-IDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           + Y+ER YAVGK+PGG+++RE RP+E+ +L  R+IDR IRPLF   ++N+ QVI  VM  
Sbjct: 60  IGYEERLYAVGKVPGGFIKREGRPSEHAVLSGRLIDRPIRPLFPDGFRNDVQVINYVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++SP + +M+ +S +L +S +PFEGP+ G  V  ++G++++NP ++E ++  +DL V+
Sbjct: 120 DHDNSPAIAAMIGSSLSLSISDIPFEGPIAGVVVGRVDGKFIINPTVEELEKSDIDLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+DA+ MVE  A ++ E+ +L+AI+FGH   K ++    ++     +  + ++  +  +
Sbjct: 180 GTKDAINMVEAGAKEVPEEDMLEAIMFGHEMIKQIVAFQEQIVAEIGQPKMDLNLYEVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
            +   + +M + D+  +  + EK+ R + ID +  +++  F SE +S  E  ++  V   
Sbjct: 240 TINARVREMAEADMLAAIQVVEKHARQEAIDAVNARVLDVFESEEASDKELKQVKEVLNK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  + VR ++ D+KVR DGR  + +R +S++V LL RTHGS+LF RG TQA+ V TLG  
Sbjct: 300 IVKEEVRRLITDEKVRPDGRKIDEIRPLSSRVDLLPRTHGSALFTRGQTQALSVCTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L   +   FM HYNF P + GE  R GAP RREIGHG L  RA+  V+P   
Sbjct: 360 NEHQMLDGLEVEETKRFMHHYNFPPFSVGETGRYGAPGRREIGHGALGERALKQVMPSEK 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSE+ ES+GS+S A++C S++ALM AGVPI  PVAGIAMGLVK G+++ +L+
Sbjct: 420 DFPYTVRLVSEVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGENYTVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  ALQQAK GR+ ILN M  
Sbjct: 480 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLNRQILEEALQQAKVGRMQILNHMLG 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SE+R +L  F P+++++ I  D+IR+VIG GGK I  I+++TG K++I+ DGTV I  
Sbjct: 540 TISETREELSAFAPKIKVITIKVDKIRDVIGPGGKQINEIIDKTGVKIDIEQDGTVYILH 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +   I  A  MI  I    EV KIY G+VV++  FGAFV     +DGLVHISQL+ ERV
Sbjct: 600 DNSQNINQAVAMIEDIVREVEVGKIYLGKVVRIEKFGAFVEIFPGQDGLVHISQLAEERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           AKT DVV  GD + VK+ + D+RG++ LS K
Sbjct: 660 AKTEDVVAIGDEILVKVTEVDERGRVNLSRK 690


>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis M23590]
 gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis M23590]
          Length = 698

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/687 (45%), Positives = 461/687 (67%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ +Q  LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH+E K ++E   ++       K   +   +D + +    + 
Sbjct: 190 EAGASEITEQEMLEAIFFGHDEIKRLVEFQQQIVDHLQPVKSEFIPVERDEALVSRVQAL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R   +D+LK ++ + F  E    NE    E+ ++  D+  + V
Sbjct: 250 TEEKGLKETVLTFDKKQRDDNLDELKAEIAAEFIDEADPENELLINEVHAILNDLVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++  +K+R DGR  + +R + ++VG+L R HGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIAAEKIRPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   Q   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T++FPYT+
Sbjct: 370 DGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDTSKFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + +   R
Sbjct: 490 DALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQTIDHPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+VEIM I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 AELSAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIYIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ++E+I +IT   EV +IY  +V ++  +GAFV     +D L+HISQ+S +R+ K  DV
Sbjct: 610 NRSKEIIEAITREAEVGQIYDAKVKRIEKYGAFVEIFSGKDALLHISQISKDRINKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +K GDT+ VK+ + D +G++  S KV+
Sbjct: 670 LKIGDTIKVKITEIDKQGRVNASHKVL 696


>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
           sp. YIT 12067]
          Length = 690

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 316/687 (45%), Positives = 458/687 (66%), Gaps = 9/687 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  GR L +E G+IA+Q++GAVL  YG+T V+  V   ++ ++G DFFPLTV+++E+ Y
Sbjct: 1   MDLGGRTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGVDFFPLTVDFEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRP+F + Y N+ Q++   +  D +++P +
Sbjct: 61  AVGKIPGGFIKREGRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ AS AL +S +PFEGP+ G +V  I+G++++NP +++ + S L+L V+GT+DA+LM
Sbjct: 121 PAMIGASCALSISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQLNLAVAGTKDAILM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE  AN++SE+ +LDAI FGH   K ++E   K+     KE + +    F    EEM   
Sbjct: 181 VEAGANEVSEETMLDAIWFGHGVIKQLVEFQEKIVAEIGKEKMEVP---FYAPPEEMVAE 237

Query: 248 IKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           I+E     L+ +     K  R + +  +K ++   F  ++   N  ++  + + +  K+V
Sbjct: 238 IEEYGAQKLKDALMDANKLEREENVAKVKAEIAEVFLEKYPD-NAKDVAYITQKLVKKIV 296

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +   K+R DGR  + VR +S +VGLL R HGSSLF RG TQ + V+ L    + Q +
Sbjct: 297 RRTISVDKIRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQIL 356

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   ++ HYNF P + GE   + +P RREIGHG LA RA+ PV+P    FPY +
Sbjct: 357 DGLGAEETKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALRPVIPSEEDFPYAI 416

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+ ES+GSSSM +VC S+L+LMDAGVPI  PVAG+AMGLVKDG+ F IL+DI G E
Sbjct: 417 RLVSEVLESNGSSSMGSVCASTLSLMDAGVPIKAPVAGVAMGLVKDGEYFTILTDIQGLE 476

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT+ GITA+QMD+KI GI+++I   AL QAKRGR  I+ +M + +SE R
Sbjct: 477 DALGDMDFKVAGTEKGITAIQMDIKIDGINKDIFTQALAQAKRGREFIMGKMMECISEPR 536

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L ++ P++  + + PD+I  VIG GGK+I+ IV++TGAK++IDD G V IA+ +    
Sbjct: 537 KELSQYAPKITTIHVDPDKIAKVIGPGGKMIKKIVDETGAKIDIDDTGRVFIAAVNTEAA 596

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A EMI  IT   EV  +Y G+V ++M+FGAFV     ++GLVHISQLSTE V K  DV
Sbjct: 597 NKAIEMIEGITAEAEVGNVYTGKVTRLMNFGAFVEILPGKEGLVHISQLSTEHVDKVEDV 656

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V  GD + VK+ + D++G+I LS K V
Sbjct: 657 VSVGDEIVVKVTEIDNKGRINLSRKAV 683


>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
           273]
 gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
           273]
          Length = 732

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 338/711 (47%), Positives = 472/711 (66%), Gaps = 36/711 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           G+ + +ETGR+A+Q+DGA +   G+T+V+ATVV  R      QDFFPL V Y+E+ YA G
Sbjct: 12  GKTISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSVNQDFFPLQVEYREKYYAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RE+RP+E EIL +R+IDR++RPLF   Y +ETQVIINV+  D ++   V+  
Sbjct: 72  KFPGGFFKREARPSEKEILSARLIDRALRPLFPTGYYHETQVIINVISSDQQNDADVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           +AASAA+M+S +PFE  +   +V  +NG +++NP +DE +GS +D+ + GT D + M+E 
Sbjct: 132 LAASAAIMVSDIPFENAMSEVRVGRVNGLFIINPTIDELEGSDIDISIGGTADTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQMI 248
           E  ++SE  +LDAI FGH   K + +  ++LA   AK       + F+ L+   E+S+ +
Sbjct: 192 EMKEISEAEMLDAIKFGHEAIKKLCQLQNELAGEVAKA-----KRPFTPLQVPAELSEYV 246

Query: 249 KE----DLRVSCFIP-EKYVRCKQIDDLK----KKMVSYFS------------SEHSSWN 287
           K      L+   + P  K VR  +   +     KK + +FS            S+    N
Sbjct: 247 KNACESSLKELAYKPLAKEVRADETKAIYSETVKKAIEHFSAAFGPEALAADPSKALCLN 306

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E  I       +  V+R ++LD   R+DGR+ E VR I+ ++G++ R HGS+LF RG+TQ
Sbjct: 307 EHIIEEEIHSFEKNVMRRMILDDGKRLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQ 366

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           A+V VTLGT++D Q VD+L+ +    FM+HYNF P + GEV R+G+  RREIGHG LA R
Sbjct: 367 ALVAVTLGTKKDAQSVDTLTNSADKRFMLHYNFPPFSVGEVGRLGSTGRREIGHGNLAER 426

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           +I  V P   +FPYT+RIVSEI ES+GSSSMA+VCG +LALMD GVP+ KPV+GIAMGL+
Sbjct: 427 SIKMVAPGEQEFPYTVRIVSEILESNGSSSMASVCGGTLALMDGGVPLKKPVSGIAMGLI 486

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           KDG+++ +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  AL QA+RG
Sbjct: 487 KDGEEYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILENALAQARRG 546

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HIL++M + +  SR +L ++ PR+  + +P + I  +IG GG+ IR I E+TGA++NI
Sbjct: 547 RFHILDKMEEAIPASREELAQYAPRLTAIQVPVESIGLIIGKGGETIRSITEETGAEINI 606

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGL 646
           +DDGTV IA SS    +AA E+I+++   PEV  IY G+V  V D  GAFV F    DGL
Sbjct: 607 EDDGTVTIACSSNEGTKAAVEIIKALIAKPEVGTIYVGKVRDVRDELGAFVEFIPKTDGL 666

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQ 692
           VHIS++S ERV K SD +K GD + VKL+D   D R GK +  LSMK VD+
Sbjct: 667 VHISEISRERVTKVSDHLKVGDRIKVKLVDIRKDPRTGKTRFALSMKAVDE 717


>gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6192]
 gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6192]
          Length = 709

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 324/693 (46%), Positives = 464/693 (66%), Gaps = 3/693 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V I+  GR L L TG++ARQ++GAV A YG T VLAT      +K+  DF PL+V+Y 
Sbjct: 3   HSVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP E EIL+SR+IDR +RPLFSK +K E Q+I   +  D  +
Sbjct: 63  EKYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           +P VV++VAASAA+ +S +PF+GPV   +V  ++G +V+NP L++ + S LD+ V+GT +
Sbjct: 123 TPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            + MVE  A ++SED +++AI         + +A  +L +   KE + +  ++   L++E
Sbjct: 183 GITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELRERAGKEKLPLLEEESFPLKDE 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +    +  L  +CF+  K  R K I   ++++ +YF        E    +V E+++ ++V
Sbjct: 243 VIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGERIPDEQERAFNAVIEELEREIV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L++ +R DGR  E +R I+ ++G+L RTHGS+LF RG+TQA+ + TLGT  DEQ +
Sbjct: 303 RSSILERGIRTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIM 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L G +R +FM+HYNF P + GEV R+    RREIGHG LA RA+  VLP    FPYTL
Sbjct: 363 DDLEGDKRENFMLHYNFPPFSVGEVGRLYT-GRREIGHGHLAHRALEAVLPSKDDFPYTL 421

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMATVCGS+L+L++AGVPI KPVAGIAMGLV DG+  +ILSDI G+E
Sbjct: 422 RVVSEILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSDILGEE 481

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT+ GITA QMD+KI  I    M  AL+QA+RGRLHIL  M++ +SE R
Sbjct: 482 DHFGDMDFKVAGTEDGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPR 541

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L ++ PR+   A+ P++I  +IG  GK IR I E     +NIDDDG++ I S      
Sbjct: 542 PELSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISESFDVTINIDDDGSIVIYSKQKENA 601

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A+  I  + + PEV K+Y G+V +++DFGAF+ F   R+GL HISQ+S +R+    DV
Sbjct: 602 EQAKAYIDKMLEEPEVGKVYTGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHDV 661

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VK    V V++L+ D  G++ L+M ++D++  K
Sbjct: 662 VKLNQEVPVRILEIDRLGRVNLTM-LIDESKAK 693


>gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp.
           X514]
 gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X513]
 gi|257096713|sp|B0K1D0|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X514]
 gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X513]
          Length = 700

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 313/687 (45%), Positives = 462/687 (67%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++ G++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D + 
Sbjct: 64  ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF+GP     V  ++GQ+++NP  ++ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFDGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +LDAI++ H   K ++E I  + K     K  +++   D  +LE
Sbjct: 184 AIVMVEAGAKEVPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEID-KELE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I  +
Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++++R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D Q
Sbjct: 302 QMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI G
Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+ E
Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S L 
Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K  
Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK GD + VK+ D D  G+I LS K
Sbjct: 662 DVVKVGDDILVKVTDIDKLGRISLSRK 688


>gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|257096712|sp|B0K9P4|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 700

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 313/687 (45%), Positives = 460/687 (66%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++ G++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D + 
Sbjct: 64  ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +LDAI++ H   K ++E I  + K     K  +++   D   LE
Sbjct: 184 AIVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEID-KDLE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I  +
Sbjct: 243 EKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIMKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++++R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D Q
Sbjct: 302 QMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI G
Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+ E
Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S L 
Sbjct: 542 PRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASDLR 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K  
Sbjct: 602 SGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK GD + VK+ D D  G+I LS K
Sbjct: 662 DVVKVGDDILVKVTDIDKLGRISLSRK 688


>gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 701

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/687 (45%), Positives = 461/687 (67%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWA RPL +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPL VNY+E+ YA
Sbjct: 11  EWANRPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLMVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q+I  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP +++ + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGEYVINPTVEQKEVSRLDLEVAGHRDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247
           E  A++++E  +LDAI FGH E K +++   ++      E    I  +  +++EE+++ +
Sbjct: 190 EAGASEITEKEMLDAIFFGHEEIKRLVDFQQEIIDYLQPEKTEFIPKERNAEVEEKVTAL 249

Query: 248 IKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
            +E  L+ +    +K  R + ID ++ ++V+ F  E +  N+    E+ S+  D+  + V
Sbjct: 250 TEEKGLKDAIQTFDKKEREENIDAIRDEVVAEFEDEENPDNDEVIAEVNSILNDLVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  + D+KVR DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   + Q +
Sbjct: 310 RRQIADEKVRPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGAMSEYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T  FPYT+
Sbjct: 370 DGLGTEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTKDFPYTV 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D++ IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT+ GITA+QMD+KI G++  I+  AL+QA+ GRL ILN M + + + R
Sbjct: 490 DALGDMDFKVAGTEKGITAIQMDIKIDGLTREIIEEALEQARVGRLTILNHMLETIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+VE M I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I +     I
Sbjct: 550 PELSAYAPKVETMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQDMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             ARE+I  IT   EV ++Y  +V ++  +G FV     +D L+HISQ++ +R+ K  DV
Sbjct: 610 NRAREIIEDITREAEVGQVYNAKVRRIEKYGTFVELFPGKDALLHISQIANQRINKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +K GDT+ VK+ + DD+G++  S + +
Sbjct: 670 LKLGDTIEVKVTEIDDKGRVNASHRAL 696


>gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
 gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
          Length = 689

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/694 (44%), Positives = 463/694 (66%), Gaps = 13/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EI+  GR L +E G++A+Q++GAVL  YG+TVVL T    ++ ++G DFFPLTV+Y
Sbjct: 1   MQSFEIDLGGRKLTVEYGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF   ++N+ Q++  V+  + +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP----RLDEDQGSLDLFVS 179
           +   + +M+ AS AL +S +PF GP+ G +V YING +V+NP    R D D   L+L V+
Sbjct: 121 NPAEIAAMLGASCALTISDIPFMGPIAGVRVGYINGSFVINPTEEQRADSD---LNLTVA 177

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKD 236
           G+ DAV+MVE  AN+L E++VLDAI+FGH E + ++E    + + C KE   P V   K 
Sbjct: 178 GSYDAVMMVEAGANELPEEIVLDAILFGHAEIRRLVEFQQNIQRTCGKEKQIPAVF--KV 235

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
             +LEE++    +  L  +    +K+ R   I  +K++ + +F+ E+    + EI  +  
Sbjct: 236 SEELEEKVRSYAEARLDAATRNSDKFARDADISAIKEETIVHFTEEYPDAVK-EIAQILY 294

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I+  +VR ++  +K+R DGR  + VR +S +VG+L R HGS LF RG TQ + V TLG+
Sbjct: 295 RIEKGIVRHMITHEKIRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGS 354

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P  
Sbjct: 355 IGDEQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSI 414

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL
Sbjct: 415 EDFPYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSIL 474

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL+QAK+GR  IL+ M 
Sbjct: 475 TDIQGMEDALGDMDFKVAGTSKGITAIQMDIKIAGITRDILASALEQAKQGRAFILSRML 534

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + +   +L  + PRVE ++I  ++IR+VIG GGKV+R I+++TG  ++I +DG + I 
Sbjct: 535 ECIDKPAEELSPYAPRVETISIDIEKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFIT 594

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S +   +  AR+MI  I    +V ++Y G+V + + FGAFV     ++GL HISQ++  R
Sbjct: 595 SPNTEAMNLARKMIEDIVREVQVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQIAKHR 654

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V    DVV  GD + VK+++ D++G+I +S KV+
Sbjct: 655 VENIEDVVHIGDQLEVKVVEIDEKGRINVSHKVL 688


>gi|325290354|ref|YP_004266535.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965755|gb|ADY56534.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 713

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 324/703 (46%), Positives = 455/703 (64%), Gaps = 15/703 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  GR +  ETGRI RQ+ GA+   YG+TVV A        ++G DFFPLT  ++ER Y
Sbjct: 10  LQVGGRTMSFETGRIGRQAGGAIFLKYGDTVVSAFATASSKPREGIDFFPLTCEFEERLY 69

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE RP+E   L +R+IDR IRPLF + Y+N+ QV+  VM  D +    V
Sbjct: 70  AAGKIPGGFIKREGRPSEKATLTARLIDRPIRPLFPEGYQNDVQVVTMVMSVDQDCPTDV 129

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            ++ AASAAL +S +PFEGP+ G  V  ++GQ+V+NP +D+   S + L V+GT+DA++M
Sbjct: 130 SAINAASAALTISNIPFEGPIAGVIVGLVDGQFVINPTVDQAARSQMYLTVAGTKDAIVM 189

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISK-----LAKMCAKEPIVIDSKDFSK-LE 241
           VE  AN++SE+ +LDA+IF H E K + E I +      A   AKE   +  K+  + L 
Sbjct: 190 VEAGANEISEEQMLDAMIFAHEEIKKIAEFIEQYREEAFAAGLAKEKSQVVRKERPQDLI 249

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
           +++          +  + EK  R + +D ++++ + YF  ++    E    I ++ E   
Sbjct: 250 DQVKAFAYAKFDQAVRVEEKLAREEAVDQVRQETIEYFEPQYGEEPEIMATINNIMESFI 309

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++  + +R DGR  + +R I+ +V  L RTHGS++F RG TQ + V TLG   D
Sbjct: 310 HQIVRRLITVEHIRPDGRALDEIRPITVEVAALPRTHGSAVFTRGQTQVMTVATLGAVSD 369

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L   +   +M HYNF P + GEV  M AP RREIGHG LA RA+ P++P  A+F
Sbjct: 370 EQIIDGLGLEESKRYMHHYNFPPFSVGEVRPMRAPGRREIGHGNLAERALIPMIPGEAEF 429

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYTLR+VSE+ ES+GSSSMA+VCGS+LALMDAGVPI  PVAGIAMGL+++   + ILSDI
Sbjct: 430 PYTLRLVSEVLESNGSSSMASVCGSTLALMDAGVPIKAPVAGIAMGLIQEESQYAILSDI 489

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QAK GR+ IL++M  V+
Sbjct: 490 QGLEDHDGDMDFKVAGTAKGVTALQMDIKIKGVSREILAQALKQAKEGRMFILDKMLAVI 549

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L    PR+    I PD+IR VIG GGK I+ I+E+TG K++I+DDG V I++  
Sbjct: 550 GEPRKELSPHAPRIISFTIHPDKIREVIGPGGKTIKKIIEETGVKIDIEDDGRVFISAVD 609

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLS 653
               E A  +I+S+T   ++ +IYKG+VV+VMDFGAFV           ++GLVHISQL 
Sbjct: 610 GEAGEKAHSIIQSMTQEVQIGQIYKGKVVRVMDFGAFVEVIPGVLGLQGKEGLVHISQLD 669

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             RVAK  D+V EGD + VK +  D +G++ LS K    + GK
Sbjct: 670 VNRVAKVEDIVHEGDEILVKAIGIDKQGRLNLSRKEAIGSQGK 712


>gi|257870995|ref|ZP_05650648.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
           EG2]
 gi|257805159|gb|EEV33981.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
           EG2]
          Length = 705

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/697 (44%), Positives = 462/697 (66%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLQVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F+  ++NE QV   VM  
Sbjct: 60  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFADGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCSPAMAAMLGSSLALSISDVPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ A+ MVE  A ++SED +L A++FG    K ++    ++     K  + +      +
Sbjct: 180 GTKKAINMVESGAKEVSEDDMLGALLFGFEAIKELVAFQEEIVAAVGKPKMEVTLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEG----EIVS 293
            L++E+     + ++ +    EK  R  +ID++K+ +   ++ + +   +EG    E+  
Sbjct: 240 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDNVKETVKEVYAEKFAGHEDEGQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALSQAKKARMEILN 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L  + P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSPYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   +V ++Y G+VV+V  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD V VK+ + D +G+I LS K +
Sbjct: 660 NERVNKVEDVVKEGDEVLVKVTEIDKQGRINLSRKAL 696


>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           haemolyticus JCSC1435]
 gi|117940134|sp|Q4L5X7|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 700

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/691 (45%), Positives = 463/691 (67%), Gaps = 9/691 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +E G++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIEIGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI---EAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           E  A++++E  +L+AI FGH+E K ++   E +    +   KE + ++ +D + +    +
Sbjct: 190 EAGASEITEKEMLEAIFFGHDEIKRLVAFQEEVVAHIQPVKKEFVPVE-RDEALVSRVKT 248

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKV 302
              ++ L+ +    +K  R + +D LK ++ + F  E    NE    E+ ++  D+  + 
Sbjct: 249 LTEEKGLKETVLTFDKQQRDENLDTLKAEIATEFVDEADPENELLIDEVYAILNDLVKEE 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   D Q 
Sbjct: 309 VRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQL 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   Q   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T +FPYT
Sbjct: 369 IDGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTTEFPYT 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G 
Sbjct: 429 VRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGM 488

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + + + 
Sbjct: 489 EDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDQP 548

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P+VEIM I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I +     
Sbjct: 549 RKELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAIDQDM 608

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I  ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER+ K  D
Sbjct: 609 INRAREIIEDITREAEVGQVYNAKVKRIEKYGAFVELFAGKDALLHISQISKERINKVED 668

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V+  GD++ VK+ + D +G++  S K +D+N
Sbjct: 669 VLSIGDSIDVKITEIDKQGRVNASHKALDEN 699


>gi|187932015|ref|YP_001892000.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|257096689|sp|B2SDK7|PNP_FRATM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187712924|gb|ACD31221.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 693

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 316/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  +VL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNIVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  +       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRMEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|260887793|ref|ZP_05899056.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|330838689|ref|YP_004413269.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|260862469|gb|EEX76969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|329746453|gb|AEB99809.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
          Length = 689

 Score =  622 bits (1603), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 315/695 (45%), Positives = 467/695 (67%), Gaps = 15/695 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + E++  GRPL +E G++A+Q++G+VL  YG+T VL         ++G DFFPLTV++
Sbjct: 1   MQSFEMQVGGRPLIIEQGKMAKQANGSVLVRYGDTAVLVAATASAEPREGIDFFPLTVDF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q+I  V+  D +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSESAILCSRLIDRPIRPLFPEGFRNDVQIIATVLCVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           ++P +  M+ AS AL +S +PF GP+ G +V  ++G+ V+NP   +   S L+L V+G+ 
Sbjct: 121 NAPEIAGMIGASCALCVSDIPFAGPIAGVKVGRVDGELVINPTEAQRAVSDLNLTVAGSH 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-- 240
           DAV+MVE  AN+L E+V+L+AI+FGH E + ++E   ++A  C KE      K   KL  
Sbjct: 181 DAVMMVEAGANELPEEVILEAILFGHKEIQRIVEFQQEIAAACGKE------KREVKLFL 234

Query: 241 -EEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             EE+ + I++     L  +   P+K  R + I  +  +++ +F +++   N  EI +V 
Sbjct: 235 APEELDRAIRDYASSRLDEAVRNPDKLDRDEHIAAIGAEVLEHFLADYPE-NAKEIAAVT 293

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I  + VR ++  +K+R DGR  + VR +S +VGLL RTHGS LF RG TQ + + TLG
Sbjct: 294 HKIVKESVRRMITHEKIRPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVLTITTLG 353

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ +D L   Q   ++  YNF   + GE      P RREIGHG LA RA+ P++P 
Sbjct: 354 SVGDEQIIDGLGPEQSKHYIHQYNFPGYSVGEARPARGPGRREIGHGALAERALLPMIPS 413

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSSM +VCGS+L+LM+AGVPI +PV+G+AMGLVKDGD + I
Sbjct: 414 LDEFPYTIRLVSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKDGDHYTI 473

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT+ G+TA+QMD+KI GI+ +I++ AL QAKRGR  IL +M
Sbjct: 474 LTDIQGMEDALGDMDFKVAGTEKGVTAIQMDIKIAGITRDILLSALSQAKRGRAFILEKM 533

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ +    L  + PRV +M I  D+IR VIG GGK I+ I+++TGA+++I +DGT+ I
Sbjct: 534 LAVIDKPAADLSPYAPRVTVMKIHVDKIREVIGSGGKTIKKIIDETGAQIDIQEDGTIFI 593

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++     + A+++I  I    EV  +YKG+V ++M+FGAFV     ++GL HISQL+  
Sbjct: 594 AAADGEGAKKAQQIIEDIVRDVEVGAVYKGRVTRIMNFGAFVEILPGKEGLCHISQLARH 653

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RVA+  DVV EGD + VK+++ D +G++ LS KV+
Sbjct: 654 RVAQVEDVVHEGDELEVKVVEIDKQGRVNLSHKVL 688


>gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 693

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 320/685 (46%), Positives = 472/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+  G DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  + G +V Y NG+Y+LNP  +E  +  LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-EEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +ISKLAK+ +K  I       +KL + ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSISKLAKVSSKPRIEYTIYQINKLLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  IP K  R  ++++L+K ++ + F+S+   + ++E E++  F DI+  +V
Sbjct: 248 HFFGEIKNAYTIPSKQERNIKLNELRKNVLEHIFTSDVDGNEYSEKEVLEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G +++ +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKSRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRIVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  A +QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQAFEQARTGRLHILGIMNEVIREH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ IM + P +I++V+G GG V++GIVE+TGA+++  D G VKI +     
Sbjct: 548 KESVSDVAPQIHIMNVNPAKIKDVVGRGGSVVKGIVEKTGAQIDTSDSGEVKIFAKDKRS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A+ M+  I    E  +IYKG++VK++D GAFV+  G++DG +  S++  E+    ++
Sbjct: 608 LDLAKSMVEEIVAEVEEGQIYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
 gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
          Length = 818

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/692 (46%), Positives = 454/692 (65%), Gaps = 13/692 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TVE+   G+ +K ETGRIA+Q+ GA   T G+  VLAT V     K+G DFFPLTV Y+E
Sbjct: 6   TVEL-AGGKQIKFETGRIAKQASGAAYTTSGDNAVLATAVASPDPKEGIDFFPLTVEYRE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
            TYA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQV+  V   D E+ 
Sbjct: 65  FTYAGGRIPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKEND 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P V+ +  AS AL LS +PF GPV   ++ YI+ QY++NP   E   S L++ V GT+D 
Sbjct: 125 PDVLGINGASCALALSDIPFHGPVGAVRIGYIDEQYIVNPTYTERLTSKLNIMVVGTKDG 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239
           ++MVE  A ++ E+VV+ AI F H E K ++  I  L     K      P+  D++  + 
Sbjct: 185 IVMVESGAKEIPEEVVVGAIEFAHEEIKKIVAGIEDLVSRAGKTKRTVTPLENDTEYAAA 244

Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           L+ ++ + + + L    +   E Y + K+I D  KK +     E  +    ++   FE +
Sbjct: 245 LKAKVGESLADALNTKKYPKFESYAKVKEIKDALKKDLP----EGDAAAAKKLGKYFEGL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  + R  +L+ ++R D R  + +R I+ + G+L R HGS+LF RG+TQA+V  TLGT +
Sbjct: 301 RETIFREQVLNDRIRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTD 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q ++S  G Q+  FM+HYNF P + GEV RM    RREIGHG LA RAI  VLP   +
Sbjct: 361 DAQRMESYEGEQKRKFMLHYNFPPFSVGEVGRMTGVGRREIGHGALAWRAIEAVLPGEDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            PYTLR+VS+I ES+GSSSMATVCG+SL+LM AG+P+   VAG+AMGLVK+GD + IL+D
Sbjct: 421 SPYTLRVVSDILESNGSSSMATVCGASLSLMQAGIPLKGSVAGVAMGLVKEGDKYAILTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+G EDH G MDFKVAGT +GITA+QMD+KI GI+  IM  AL+QA+ GRL +L++M  +
Sbjct: 481 IAGAEDHYGDMDFKVAGTRNGITALQMDIKIMGITAQIMREALEQARHGRLFLLDKMDAI 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S++  +   F PR+  + IP D+IR++IG GGKVIRGIV+ TG K+++DD G V +ASS
Sbjct: 541 ISKANEEKSAFAPRIHTIQIPTDKIRDLIGPGGKVIRGIVDATGVKIDVDDTGRVNVASS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               +  A +MI  IT VPEV K Y G+VV++ +FGAFV      DGL+H+S+++  RV 
Sbjct: 601 DAEGLAKAIQMISDITAVPEVGKTYLGKVVRLAEFGAFVEIFPGTDGLLHVSEIAEHRVK 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              D +++GD V VK+L  +   +IKLS K V
Sbjct: 661 DVKDELRDGDQVLVKVLSIEGN-RIKLSRKAV 691


>gi|85860514|ref|YP_462716.1| polynucleotide phosphorylase/polyadenylase [Syntrophus
           aciditrophicus SB]
 gi|123752513|sp|Q2LWT4|PNP_SYNAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|85723605|gb|ABC78548.1| polyribonucleotide nucleotidyltransferase [Syntrophus
           aciditrophicus SB]
          Length = 705

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 328/696 (47%), Positives = 469/696 (67%), Gaps = 22/696 (3%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+AGR + ++TG +A Q+DGAV+  YG+TVV+ T V  ++ ++G DF PLTV+YQE TYA
Sbjct: 8   EFAGRNISIKTGYVAGQADGAVMVIYGDTVVMVTAVSLKTAREGVDFLPLTVDYQEMTYA 67

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP E EIL SR+IDRSIRPLF K Y  ETQ++  V+  D E+   V 
Sbjct: 68  AGKIPGGFFKREGRPNEREILTSRVIDRSIRPLFPKGYCYETQLVATVLSVDSENDSDVA 127

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLF------VSGTQ 182
           +++AASAAL +S +PF+GP+VG +V  ++GQ++ NP +L++++G L+L+      V GT+
Sbjct: 128 ALLAASAALEISDIPFKGPIVGVRVGRVDGQFICNPSKLEQEKGDLNLYLVGRKVVPGTE 187

Query: 183 D-----AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI 232
                  ++M+E EA Q+ E+ V+  I FG    +PVIE   +L     K     E + I
Sbjct: 188 GRPYDVNLVMLEGEAQQVEEEHVIAGIDFGLECMRPVIELQDQLRSALGKPKREFEAVEI 247

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           D    +++ E+ +  ++E  R+S     K  R   +D+++  ++   +++ +        
Sbjct: 248 DDALLAEVSEKAAVRMREAYRMS----RKLDRHAALDEIRNSVLKAVTADEAGLRL-RTA 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  E ++ ++VR V+L +K R+DGR    +R ISA+VG+L R HGS+LF RG+TQ++  +
Sbjct: 303 AALEALEKRIVRDVILKEKQRIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLAAL 362

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT  DEQ +D ++G +   F++HYNF P   GE   + +P RREIGHG LAR+A+ PV
Sbjct: 363 ALGTSSDEQRLDYVAGEETRSFILHYNFPPYCVGEARPLRSPGRREIGHGNLARKALMPV 422

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P   +FPYT+RIVSEI  S+GSSSMATVCG  L LMD GVP+   VAGIAMGL+K+G+ 
Sbjct: 423 IPSPEEFPYTIRIVSEILSSNGSSSMATVCGGLLCLMDGGVPVKGVVAGIAMGLLKEGEQ 482

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            +ILSDI GDEDH G MDFKV GT  GITAMQMD+KI GI+E+I+  AL QA+ GRL I+
Sbjct: 483 VVILSDILGDEDHAGDMDFKVCGTSKGITAMQMDIKIDGINEDILRKALAQAREGRLFII 542

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           +++   +SE R +L  + PR+  + + P+++R VIG GGK IR IV +TG  ++++DDGT
Sbjct: 543 DKILATISEPRKELSIYAPRITTVKVKPEKVRAVIGTGGKNIRQIVSETGVTIDVEDDGT 602

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IASS +     A  M+R +T+  EV KIY+G V KV+DFGAFV      +GL+HISQL
Sbjct: 603 VTIASSDMEASARAIAMVRWLTEDAEVGKIYRGTVKKVVDFGAFVEILPGTEGLLHISQL 662

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + ERV K +D+V EGD V VK+L+ D +GKI+LS K
Sbjct: 663 AKERVNKVTDIVNEGDEVIVKVLEVDKQGKIRLSRK 698


>gi|229918674|ref|YP_002887320.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
           AT1b]
 gi|259534123|sp|C4L6J6|PNP_EXISA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229470103|gb|ACQ71875.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
           AT1b]
          Length = 738

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 315/687 (45%), Positives = 453/687 (65%), Gaps = 10/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EW GRPL +E G++A+Q++G+ L  YG+TVVLATV   ++ KD  DFFPLTVNY+E+ Y+
Sbjct: 11  EWGGRPLSVEVGQLAKQANGSALVRYGDTVVLATVTASKAPKD-LDFFPLTVNYEEKLYS 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+LRRE RP EN IL SR+IDR IRPLF   ++++ QV+I VM +D + S  + 
Sbjct: 70  VGKIPGGFLRREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVMIYVMSNDPDCSAEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
            M+  S AL +S +PF+GP+ G  V  ++G++V+NP   + ++  L+L V+GT  A+ MV
Sbjct: 130 GMLGTSIALSISDVPFDGPIAGVTVGRVDGEFVINPTTAQLEKTDLELQVAGTSTAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS--- 245
           E  AN++ EDV+L++I+FGH E K +I    ++ +   K          SK +E ++   
Sbjct: 190 EAGANEVPEDVMLESILFGHEEIKRLIAFQQEIVEAVGKPKF---EYTVSKYDEALTAEL 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKVV 303
           +  + ++  +  + EK+ R + I+++  K V+ + +  +      GE+  +        V
Sbjct: 247 EAARPEIVEAVQVEEKHARDEAINEVIAKYVAMYEARLADEPSKLGEVSGILNKFVKDEV 306

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++  +KVR DGR  + +R ++++VGLL R HG  LF RG TQ + V TLG   D Q +
Sbjct: 307 RRLITVEKVRPDGRRPDVIRPLASEVGLLPRAHGVGLFTRGQTQVMSVATLGVIGDAQII 366

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+ P++P+ A FPYT+
Sbjct: 367 DGIGLEENKRFMHHYNFPPFSVGEARPVRAPGRREIGHGALGERALLPIIPKEADFPYTI 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGL+ +G+ + +L+DI G E
Sbjct: 427 RLVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIMEGEHYTVLTDIQGLE 486

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+QMD+KI GI+  I+  AL+QA+ GRLHIL+ M + L   R
Sbjct: 487 DHLGDMDFKVAGTKDGITALQMDIKIAGITREILEEALEQARVGRLHILDHMLETLETPR 546

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            QL ++ P++  M I PD+IR+VIG GGK+I  I++QTG K++I+ DGTV IAS+    I
Sbjct: 547 TQLSKYAPKIVTMTINPDKIRDVIGPGGKMINSIIDQTGVKIDIEQDGTVFIASTDQEGI 606

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A  MI  I     V ++Y   V ++  FGAFV     +D LVH+S+ S ERVA   DV
Sbjct: 607 DLAMSMIGDIVREVVVGEVYDATVRRIEKFGAFVELFKGKDALVHVSEFSLERVANVEDV 666

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VK GD++ VK+ + DD+G++  S K +
Sbjct: 667 VKLGDSIQVKVTEIDDKGRVNASRKAL 693


>gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 721

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 314/689 (45%), Positives = 463/689 (67%), Gaps = 3/689 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETGRIA+Q+ G+V+  YG+TVVL+T       ++G DFFP+TV+Y+ER 
Sbjct: 5   KMQLAGRELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVDYEERL 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RPTE  IL +R+ DR  RPLF K ++N   ++  V+  D ++ P 
Sbjct: 65  YAVGKIPGGFIKREGRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTTVLSVDQDNPPE 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V+S+V ASAAL +S +PF GP+    V +I+G+ V+NP  ++ +Q  L L V+ T+D ++
Sbjct: 125 VLSIVGASAALSISNIPFAGPLSAVVVGWIDGKPVINPNQEQAEQSKLHLVVASTKDGIM 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMS 245
           MVE  A++L+ED VL+AI+ G +  K ++    ++     +E + ++  +  +++ E++ 
Sbjct: 185 MVEAGAHELTEDEVLEAIMAGDDANKEIVALQEQMVAEVGQEKMQVNVFQPDAEVAEQVR 244

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           Q   + +  +    EK+ R   I + KK+ + +F+ E    NE ++   FE++  + +RT
Sbjct: 245 QFCSDKVAQAVRTIEKHARETAISEAKKETIEHFA-EIFPENEKDVKVAFENLVKETMRT 303

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L + +R DGR S+ +R ++++VG+L RTHGS LF RG TQ + V TLG   + Q +D 
Sbjct: 304 MILKENLRPDGRKSDEIRPVTSEVGILPRTHGSGLFTRGQTQVLNVCTLGAPGEVQRLDG 363

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   +M HYNF P + GE   M   SRR+IGHG LA +A+ PVLP    FPYT+R+
Sbjct: 364 LGLEESKRYMHHYNFPPYSVGEAGFMRGASRRDIGHGALAEKALVPVLPSEEDFPYTIRL 423

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSM +VCGS+L++MDAGVP+ KPV+G+AMGL+ +GDD  ILSDI G ED 
Sbjct: 424 VSEVVESNGSSSMGSVCGSTLSMMDAGVPLKKPVSGVAMGLIVEGDDVAILSDIQGMEDF 483

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GITA+QMD+KI G+S  I+  ALQQAK G +HI+N+M++V+ E R +
Sbjct: 484 LGDMDFKVAGTPEGITALQMDIKIKGLSREILTKALQQAKDGYMHIMNKMTEVIPEPRKE 543

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L    PR+  + I PD+IR+VIG GGK+I  IV +T A ++I+ DGT+ IA+ S    + 
Sbjct: 544 LSPHAPRIMTININPDKIRDVIGPGGKMINKIVAETDADIDIEPDGTIYIAAVSPESGKK 603

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A EMI S+T   +  ++Y G+V +V  +GAFV     +DGLVHIS+L+ ERV KT DVV 
Sbjct: 604 ALEMIESLTKEVQPGEVYTGKVTRVEKYGAFVEILPGKDGLVHISRLAHERVEKTEDVVN 663

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            GD + VK++  DDRG+I LS +    N 
Sbjct: 664 IGDEIPVKVIGIDDRGRIDLSRRAAIPNA 692


>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Thermoanaerobacter tengcongensis MB4]
          Length = 707

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/687 (44%), Positives = 463/687 (67%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y++GKIPGG+++RE +P+E  IL +R+IDR IRPLF + Y+N+ QVI  V+  D ++
Sbjct: 64  ERLYSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDA 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++G++V+NP  ++ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +LDAI++ H   K ++E I  + K     K  +V+   D  +LE
Sbjct: 184 AIVMVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEID-KELE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     E +  +   PEK  R   +D ++++++ +F  E+   N  +I  V   I  +
Sbjct: 243 EKVRAYATEKIYNALRTPEKKERNDNLDKVEQEVLEHFKDEYPD-NLADIDEVLYKIMKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D Q
Sbjct: 302 QMRKMIKEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            ++ +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 ILEGIGDEEFKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGIAMGL+K+ D+ +IL+DI G
Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLILTDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ G+TA+QMD+KI GI  +I+ MAL++A++ RL++L +M +V+ E
Sbjct: 482 IEDFLGDMDFKVAGTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIKE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L ++ PRV  M + P++IR++IG  GK I  I+ +TG K++I++DG + I + +L 
Sbjct: 542 PRKELSKYAPRVVRMVVNPEKIRDIIGPAGKTITKIISETGVKIDIEEDGRLYITAPNLE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++MI +IT   EV  IY G+V+++  FGAFV     ++GLVHIS LS +RV +  
Sbjct: 602 AGERAKQMIEAITKDIEVGGIYLGKVLRIAPFGAFVEIAPGKEGLVHISNLSKKRVRRVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK GD + VK+ + D  G+I LS K
Sbjct: 662 DVVKVGDNILVKVTEIDKLGRIVLSRK 688


>gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 690

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 313/695 (45%), Positives = 463/695 (66%), Gaps = 14/695 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EI+  GR L +E G++A+Q++GAVL  YG+TVVL T    ++ ++G DFFPLTV+Y
Sbjct: 1   MQSFEIDLGGRKLTVEHGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF   ++N+ Q++  V+  + +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP----RLDEDQGSLDLFVS 179
           + P + +M  AS AL +S +PF GP+ G +V YING++V+NP    R D D   L+L V+
Sbjct: 121 NPPEIAAMFGASCALTVSDIPFMGPIAGVRVGYINGEFVINPTEEQRADSD---LNLTVA 177

Query: 180 GTQDAVLMVELEANQLSEDVVLDAII-FGHNECKPVIEAISKLAKMCAKE---PIVIDSK 235
           G+ DAV+MVE  AN+L E++VLDAII FGH E + ++E    + + C KE   P V   K
Sbjct: 178 GSYDAVMMVEAGANELPEEIVLDAIILFGHAEIRRLVEFQQNIQQACGKEKQIPSVF--K 235

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
              +LEE++    +  L  +    +K  R   I  +K++ +++F+ E+    + EI  + 
Sbjct: 236 VSEELEEKVRSYAEARLDTATRNSDKLSRDADISAIKEETIAHFAEEYPDAVK-EIAQIL 294

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+  +VR ++  +K+R DGR  + VR +S +VG+L R HGS LF RG TQ + V TLG
Sbjct: 295 YHIEKGIVRHMITHEKIRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLG 354

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              DEQ +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P 
Sbjct: 355 AIGDEQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPS 414

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ I
Sbjct: 415 IEDFPYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSI 474

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  G+TA+QMD+KI GI+ +I+  AL+QAK+GR  IL++M
Sbjct: 475 LTDIQGMEDALGDMDFKVAGTSKGLTAIQMDIKIAGITRDILASALEQAKKGRAFILSKM 534

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + + +   +L  + PRVE + I  ++IR+VIG GGKV+R I+++TG  ++I +DG + I
Sbjct: 535 LECIDKPAEELSPYAPRVETITIDIEKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFI 594

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            S +   +  AR+MI  I    +V ++Y G+V + + FGAFV     ++GL HISQL+  
Sbjct: 595 TSPNTEAMNLARKMIEDIVREVQVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKH 654

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV    DVV  GD + VK+++ D++G+I +S KV+
Sbjct: 655 RVENIEDVVHIGDQLEVKVVEIDEKGRINVSHKVL 689


>gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium
           autotrophicum HRM2]
 gi|257096686|sp|C0QHM6|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2]
          Length = 695

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 316/690 (45%), Positives = 456/690 (66%), Gaps = 12/690 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E  G+   L  G+IA+Q+ G+V+  YGET+VL T V  +  +D   F PLTV YQE+ YA
Sbjct: 8   ELNGKEFSLRAGKIAKQASGSVIVQYGETIVLVTAVAAKEARDSVSFLPLTVEYQEKIYA 67

Query: 70  VGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
            G+IPG Y RRE  RP+E E L +R+IDR IRPLF K + +E QVI  V+  D E+ P V
Sbjct: 68  AGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFEKGWASEIQVIATVISTDKENDPDV 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +++V ASAAL +S +PF GP+ G +V  I+G+++ NP + E + S ++L V+G++  V+M
Sbjct: 128 LALVGASAALQMSDIPFAGPIAGLRVGRIDGKFIANPTVQEMENSDIELVVAGSKTGVVM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEE 242
           VE  A+ +SE  +L+AI FGH   +P+I+    L K   KE     P ++D +  +K+ E
Sbjct: 188 VEGGADVVSEADMLEAIFFGHQAMQPLIQLQEDLKKALGKEKRAYTPPLVDEELMAKVVE 247

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
               + ++ +  +     K+ R K +DD++ +++     E  +    EI S+F D+  KV
Sbjct: 248 ----LAQDKIHTAVQTQGKFERVKALDDVRTEVIETLG-EAFADRINEIKSMFGDLVKKV 302

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R ++L +  R+DGR  + VR+I+ +VG+L R HGS+LF RG+TQ + V+TLG+  DEQ 
Sbjct: 303 SRKIVLTENQRIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQR 362

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +++L+G +  +FM+HYNF P + GE  R G PSRR++GHG LA RA+  VLP  A F YT
Sbjct: 363 IETLNGNETRNFMLHYNFPPFSVGECRRAGGPSRRDVGHGNLAHRALARVLPDQADFEYT 422

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+V E+ ES+GSSSM TVC  +LALMD GVPI+ PV+GIAMGLV D D+ ++L+DI GD
Sbjct: 423 IRLVGEVMESNGSSSMGTVCAGTLALMDGGVPIAAPVSGIAMGLVSDADNTVVLTDILGD 482

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT+ GITA+QMD+KI  + + ++V AL QA+ GRLHIL  M   L   
Sbjct: 483 EDHFGDMDFKVAGTEQGITALQMDIKIRELPKAVLVKALDQARIGRLHILKRMLATLEIH 542

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++  + P++  + I PD+IR +IG GGK+IR I   T   + +DD G +KIA+ +  +
Sbjct: 543 RDKMSPYAPKIITVKINPDKIREIIGPGGKMIRSIQADTNTNIEVDDSGLIKIAAENQED 602

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            EAA +++  I   PE+  IY+G+VVK  DFGAFV      DGLVHIS+L+  RV K +D
Sbjct: 603 GEAAAKIVSDIGMDPEIGGIYEGEVVKTTDFGAFVRIKTGTDGLVHISELANHRVKKVTD 662

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           VVKEG+ + VK+L+    GKI+LS K +++
Sbjct: 663 VVKEGEVIRVKVLEITRDGKIRLSCKALEE 692


>gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 693

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/685 (46%), Positives = 471/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+  G DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  + G +V Y NG+Y+LNP  +E  +  LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-EEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I KLAK+ +K  I       +KL + ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSIGKLAKVSSKPRIEYTIYQINKLLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  IP K  R  ++++L+K ++ + F+S+   + + E EI+  F DI+  +V
Sbjct: 248 HFFGEIKNAYTIPSKQERNIKLNELRKNVLEHIFTSDVDGNEYAEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G +++ +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKSRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRIVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARTGRLHILGIMNEVIREH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ IM + P +I++V+G GG V++GIVE+TGA+++  D G VKI +     
Sbjct: 548 KESVSDVAPQIHIMNVNPAKIKDVVGRGGSVVKGIVEKTGAQIDTSDSGEVKIFAKDKRS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A+ M+  I    E  +IYKG++VK++D GAFV+  G++DG +  S++  E+    ++
Sbjct: 608 LDLAKSMVEEIVAEVEEGQIYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii
           KSM-K16]
 gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
           KSM-K16]
          Length = 710

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 313/688 (45%), Positives = 457/688 (66%), Gaps = 4/688 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +E G++A+Q++GAVL  YG+T VL+T    +  KD   FFPLTVNY+
Sbjct: 6   HEFSIDWAGRTLSVEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA GKIPGG+++RE RP+E  IL SR+IDR IRPLF   ++N+ QVI  VM  D ++
Sbjct: 65  ERLYAAGKIPGGFIKREGRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDA 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           SP + +M+ +S AL +S +PFEGP+ G  V  ING++++NP   +  +  +DL V+GT++
Sbjct: 125 SPEMAAMIGSSLALCVSDIPFEGPIAGVTVGRINGEFIMNPTPAQLAESDIDLTVAGTKE 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A ++ EDV+L+AI+ GH   K +I    K+ ++C KE   +  K F ++LE 
Sbjct: 185 AINMVEAGAKEVPEDVMLEAILAGHENIKKMIAFQEKVVEVCGKEKREVQLKTFDAELEA 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +  +  ++ +  I EK+ R   ID++    V   S +  S N  E+  + +    + 
Sbjct: 245 RLRESAEASIKEAVRIAEKHARQDAIDEIIAAQVEQHSDD-DSINVDEVKEILQMFVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++  +K+R DGR  + +R +S+Q+ LL RTHGS LF RG TQA+ V TLG   D Q 
Sbjct: 304 VRRLITVEKIRPDGRGVDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQV 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  V+P   +FPYT
Sbjct: 364 LDGLGIEETKRFMHHYNFPQFSVGETGPIRAPGRREIGHGALGERALEQVIPSEQEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+   +L+DI G 
Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQGEHMTVLTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT +G+TA+QMD+KI GI+  ++  AL+QAK+GR+ IL+ M + + + 
Sbjct: 484 EDALGDMDFKVAGTANGVTALQMDIKISGINREVLEQALEQAKQGRMKILSNMMEAIDKP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L E+ P++  + I PD+IR+VIG  GKVI  I+E+TG K++I+ DGTV I+S   A 
Sbjct: 544 RAELSEYAPKILTLTINPDKIRDVIGPSGKVINKIIEETGVKIDIEQDGTVYISSLDTAM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A+++I  +    +V + Y G+V ++  FGAFV     +DGL+HISQ++ ER+ K  D
Sbjct: 604 NQKAKQIIEDLVREVQVGETYHGKVKRIEKFGAFVELFKGKDGLLHISQIAEERINKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K GD V V++ + D++G++ LS KV+
Sbjct: 664 VFKLGDEVDVRVTEIDNQGRVNLSRKVL 691


>gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
 gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
          Length = 692

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/688 (45%), Positives = 453/688 (65%), Gaps = 13/688 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E AGRP ++E G +A+ + G+ +  YGET VLA     +  ++G DFFPL+V+Y+E+ 
Sbjct: 5   ETEIAGRPFRVEIGEVAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDYEEKQ 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+L+RE RP+E  IL SR+IDR IRPLF K ++N+ QV+  VM  + +++P 
Sbjct: 65  YAVGKIPGGFLKREGRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQDNAPE 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ AS AL +S +PF+GP     V  I+G+++LNP   + + S L L V+GT+DA++
Sbjct: 125 IAAMIGASIALSISDIPFDGPTGSVAVGLIDGEFILNPTEAQREVSDLSLTVAGTKDAIM 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KL 240
           MVE  AN++SE+ +L+AI+F H E K ++    ++          ++ KD++      +L
Sbjct: 185 MVEAGANEVSEETMLEAILFAHEEIKKIVAFQEEIVAAVG-----VEKKDYTLYLPTDEL 239

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             E+   +   +  +    +K  R + ID +K ++V +F  E       +I ++   +Q 
Sbjct: 240 TAEVEAFVGGKMHEAVHTEDKTERLENIDAVKTEVVEHFG-ELYPEQLNDIDTILTALQK 298

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR+++L  ++R D R  + VR I+A++  + R HGS LF RG+TQ + + TLG   D 
Sbjct: 299 KEVRSLILVDRIRPDNRKMDEVRPITAKIDYIPRVHGSGLFTRGETQVLSIATLGVLRDA 358

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D LS      +M  YNF   + GE   M +P RREIGHG LA RA+ P++P   +FP
Sbjct: 359 QVLDGLSNDTEKRYMHQYNFPGYSVGEARPMRSPGRREIGHGALAERALLPMIPPEEEFP 418

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSE+  S+GS+S A+VCGSSLALM AGVP+ KPVAG+AMGL+K+ +   IL+DI 
Sbjct: 419 YAIRVVSEVLSSNGSTSQASVCGSSLALMAAGVPLKKPVAGVAMGLIKEDEKLAILTDIQ 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAGT  GITA+QMD+KI GI   I+  AL+QA+ GR+HIL  M++ +S
Sbjct: 479 GMEDFLGDMDFKVAGTKDGITAIQMDIKIHGIDREILTQALEQARIGRMHILGIMNEEIS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R +L  + PR+  M I PD+IR+VIG GGKVI  I+E+TG K++I+DDGT+ IAS   
Sbjct: 539 EPRAELSPYAPRIMTMTINPDKIRDVIGSGGKVINKIIEETGVKIDIEDDGTIYIASEDG 598

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A+ +I  I    EV ++Y G+VV++M+FGAFV   G +DGL+HIS+L+ ERV   
Sbjct: 599 VAADKAKAIIEDIVKEVEVGEVYTGEVVRIMNFGAFVSLPGGKDGLIHISKLAKERVKSV 658

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            DVVK GD V VK+++ DD+G+I LS K
Sbjct: 659 EDVVKLGDVVTVKVVEIDDKGRINLSRK 686


>gi|257873450|ref|ZP_05653103.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC10]
 gi|257807614|gb|EEV36436.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC10]
          Length = 705

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 460/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +      +
Sbjct: 180 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEVVAAVGKPKMEVKLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+     + ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILN 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  L+  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD + VK+ + D +G++ LS K +
Sbjct: 660 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 696


>gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU144]
          Length = 701

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/692 (45%), Positives = 461/692 (66%), Gaps = 11/692 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP + D++   LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           E  A++++E  +L+AI FGH E K ++    E I  +  +  K+  V   +D   +E+  
Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPI--KQEFVPVERDEDLVEKVK 247

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAK 301
           S    + L+ +    +K  R + +D LK+++V +F  E    NE    E+ ++  D+  +
Sbjct: 248 SLTEDKGLKETVLTFDKQQRDENLDALKEEVVGHFLDEEDPENETLVKEVYAILNDLIKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   D Q
Sbjct: 308 EVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQ 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T  FPY
Sbjct: 368 LIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPY 427

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G
Sbjct: 428 TIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQG 487

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M   + +
Sbjct: 488 MEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQ 547

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P+V  M+I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A
Sbjct: 548 PREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQA 607

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            I  A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER+ K  
Sbjct: 608 MINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVE 667

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           DV+K GDT+ VK+ + D +G++  S KV++Q+
Sbjct: 668 DVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699


>gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus
           SAFR-032]
 gi|187470936|sp|A8FDD7|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus
           SAFR-032]
          Length = 705

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/691 (46%), Positives = 458/691 (66%), Gaps = 8/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAVL  YG+T VL++    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QVI  VM  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  ++G++++NP +++ +Q  ++L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A+++ E+ +L+AI++GH E K +IE   ++ K   K  I I   +  + L +
Sbjct: 185 AINMVEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLAD 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---VFEDIQ 299
           E+  + + DL  +  + EK+ R   I  +KK +V  F  E    +E  I     V   + 
Sbjct: 245 EVKALAETDLLKAIQVHEKHAREDAISAVKKAVVEKF--EEEDRDEATIKQAKDVLNKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI G+S++I+  ALQQAK+GR+ IL+ M   +
Sbjct: 483 QGMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             SR +L  + P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 PTSRGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTE 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  +    EV ++Y G+V ++  FGAF+     +DGLVHIS+L+ +RV K
Sbjct: 603 EDMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica
           ATCC 39073]
 gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica
           ATCC 39073]
          Length = 747

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 327/701 (46%), Positives = 464/701 (66%), Gaps = 24/701 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           AGR L LETGR+A+Q+ GAV+ +YG T+VL T       ++G DFFPLTV+Y+ER YA G
Sbjct: 12  AGRDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLTVDYEERLYAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP+E  IL +R+IDR IRPLF K Y+N+  V+  VM  D +  P+V  +
Sbjct: 72  KIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSVDQDCPPNVAGI 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
           + ASAALMLS +PF GP+    V  I+ + V+NP L+ED + SL+L V+GT +A++MVE 
Sbjct: 132 IGASAALMLSAIPFAGPIGAVSVGLIDNRPVINPTLEEDSRSSLNLTVAGTANAIMMVEA 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISK-----LAKMCAKE-PIVIDSKDFSKLEEEM 244
            A ++ ED++L+ I+ GH E K ++  I++     LA   AKE P ++  +     E  +
Sbjct: 192 GAKEVPEDLMLECIMQGHEEIKRIVAFINEFRAEALAMGLAKEKPELVAPQLDPAWESRV 251

Query: 245 SQMIKEDLRVSCFIP--EKYV---RCKQIDDLKKKMVSYF---SSEHSSWNE---GEIVS 293
            ++    LR   +    EK+    R KQ+D  ++++ +       E  + N    G I  
Sbjct: 252 REIATPRLREVIYRSRDEKWSKQERDKQLDACREEINNLILEGQEEALAANPELPGLIKE 311

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   I+ ++VR ++L + +R+DGR  E +R I+ +VG+L RTHGS LF RG+TQ + V T
Sbjct: 312 LITKIEKEIVRRMILTEGIRVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVLTVTT 371

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ +D L   +   +M HYNF P + GE   + AP RREIGHG LA RA+ P++
Sbjct: 372 LGPISDEQILDDLGVDESKRYMHHYNFPPYSVGEARPIRAPGRREIGHGALAERALEPMI 431

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI  PVAG+AMGLVK+ D  
Sbjct: 432 PSEEEFPYAIRLVSEVLGSNGSTSMGSVCGSTLSLMDAGVPIKAPVAGVAMGLVKENDQV 491

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGT  GITA+QMD+KI GI  +I+  AL+QA+RGRL IL+
Sbjct: 492 AILTDIQGLEDALGDMDFKVAGTKKGITALQMDIKIAGIDRSILERALEQARRGRLFILD 551

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           ++   + E R +L  + PR+  + I PD+IR++IG GGK+I+ I+E+TG +++++DDG V
Sbjct: 552 KILATIPEPRKELSPYAPRMLTITIDPDKIRDIIGPGGKIIKKIIEETGVEIDVEDDGRV 611

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC------GARDGLV 647
            IAS+  A  E A ++I S+T   E  K+Y G+V +V DFGAFV           ++GLV
Sbjct: 612 FIASTDAAAGERALKIIESLTQDVETGKVYNGKVTRVTDFGAFVEVIPRVLGMPGKEGLV 671

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HISQL+ ERV K  DVV+EGD + VK + FD +G++KLS K
Sbjct: 672 HISQLANERVEKVEDVVQEGDYILVKAIGFDPQGRLKLSRK 712


>gi|308272445|emb|CBX29049.1| Polyribonucleotide nucleotidyltransferase [uncultured
           Desulfobacterium sp.]
          Length = 697

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 322/702 (45%), Positives = 456/702 (64%), Gaps = 15/702 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           ++T  ++  G+ L ++ G++A+Q+ G+V   YG+TVVL T V     + G DF PL+V Y
Sbjct: 2   INTYRVDLGGKTLTIQAGKLAKQASGSVTVQYGDTVVLVTAVSSYEERPG-DFLPLSVEY 60

Query: 64  QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           QE+ YA G+IPG Y RRE  RP+E E L SR+IDR IRPLF K Y  E QVI  V+  D 
Sbjct: 61  QEKIYAAGRIPGNYFRREIGRPSEKETLTSRLIDRPIRPLFPKGYSCEIQVIATVLSMDH 120

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           E+ P +++M+ ASAAL +S +PF GPV   +V    GQ ++NP + E +GS +++ ++G+
Sbjct: 121 ENDPDILAMIGASAALEISDIPFAGPVASVRVIRKEGQLIVNPTIQECEGSDINIIIAGS 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +  V+MVE  +N +SE  +L+AI +GH   +P+I+    L     +E   +  +++++ E
Sbjct: 181 KTGVVMVEGGSNMVSEKDMLEAIFYGHEAMQPIIDIQHNL-----RETNGVPKRNYTEKE 235

Query: 242 ------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
                 E++  +    LR +  IP K  R   +  LK ++      +++     E   +F
Sbjct: 236 KDQAFVEKIEAIAATRLRENLIIPGKIERHSALRALKSELFEQLGPDYTDRKP-EFYEIF 294

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D+Q K+ R +++ +  R+DGR  + +R I+ +VGLL R HGS+LF RG+TQ + V+TLG
Sbjct: 295 YDLQKKISRDLIIKEGRRIDGRKFDEIRPITCEVGLLPRPHGSALFTRGETQVLAVLTLG 354

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ V++LSG +   FM+HYNF P + GE  R+G PSRR+IGHG L+ RAI  +LP 
Sbjct: 355 SGPDEQRVETLSGEELRPFMLHYNFPPYSVGETKRLGGPSRRDIGHGGLSTRAIERILPP 414

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F YT+R+VSE+ ES+GSSSM TVC  ++ALMD GVPI  PV+GIAMGLVK+GD  +I
Sbjct: 415 KEEFDYTIRLVSEVLESNGSSSMGTVCSGAMALMDGGVPIKSPVSGIAMGLVKEGDQVVI 474

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDH G MDFKV GT  GITA+QMD+KI  +   I+  AL+QA+ GR+ IL +M
Sbjct: 475 LSDILGDEDHSGDMDFKVTGTRDGITALQMDIKIHELPRTILENALEQARTGRIFILEKM 534

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +S+ R ++    P +  + + PD+IR +IG GGK IR I  +T  +V IDD G VKI
Sbjct: 535 LEAISQPREKISPHAPAIITIKVHPDKIREIIGPGGKTIRYIQSETNTRVEIDDYGLVKI 594

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++S  +  AA  +I +IT  PEV  +Y G VVK+MDFGAFV      DGLVHISQLST 
Sbjct: 595 AATSKEDGAAALNLINNITMEPEVGAVYDGTVVKIMDFGAFVQIMPGTDGLVHISQLSTR 654

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K SDVVKEGD + VK+L+    GKI+LS K V ++   P
Sbjct: 655 RVTKVSDVVKEGDIIKVKVLEISKDGKIRLSHKAVLEDENVP 696


>gi|325568458|ref|ZP_08144825.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158227|gb|EGC70380.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 715

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 460/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 11  MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 69

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 70  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 129

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 130 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 189

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ A+ MVE  A ++SE+ +L A++FG +  + ++    ++     K  + +      +
Sbjct: 190 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIQELVAFQEEVVAAVGKPKMEVKLLQVDA 249

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+     + ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 250 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 309

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 310 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 369

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 370 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 429

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 430 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 489

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 490 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALSQAKKARMEILN 549

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  L+  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 550 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 609

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV+V  FGAFV+    +DGLVHISQL+
Sbjct: 610 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLA 669

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD + VK+ + D +G++ LS K +
Sbjct: 670 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 706


>gi|257867115|ref|ZP_05646768.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC30]
 gi|257877194|ref|ZP_05656847.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC20]
 gi|257801171|gb|EEV30101.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC30]
 gi|257811360|gb|EEV40180.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC20]
          Length = 720

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 460/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 16  MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 74

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 75  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 134

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 135 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 194

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +      +
Sbjct: 195 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEVVAAVGKPKMEVKLLQVDA 254

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+     + ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 255 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 314

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 315 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 374

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 375 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 434

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 435 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 494

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 495 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILN 554

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  L+  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 555 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 614

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 615 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 674

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD + VK+ + D +G++ LS K +
Sbjct: 675 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 711


>gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
           7061]
 gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
           7061]
          Length = 705

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/691 (46%), Positives = 458/691 (66%), Gaps = 8/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I+WAGR L +ETG++A+Q++GAVL  YG+T VL++    +  K   DFFPLTVNY+
Sbjct: 6   HVFTIDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QVI  VM  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PFEGP+ G  V  ++G++++NP +++ +Q  ++L V+GT+D
Sbjct: 125 SSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKD 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A+++ E+ +L+AI++GH E K +IE   ++ K   K  I I   +  + L +
Sbjct: 185 AINMVEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLAD 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---VFEDIQ 299
           E+  + + DL  +  + EK+ R   I  +KK +V  F  E    +E  I     V   + 
Sbjct: 245 EVKALAETDLLKAIQVHEKHAREDAISAVKKAVVEKF--EEEDRDEATIKQAKDVLNKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI G+S++I+  ALQQAK+GR+ IL+ M   +
Sbjct: 483 QGMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             SR +L  + P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 PASRGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTE 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  +    EV ++Y G+V ++  FGAF+     +DGLVHIS+L+ +RV K
Sbjct: 603 EDMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis RP62A]
 gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU028]
 gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU045]
          Length = 701

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/692 (45%), Positives = 461/692 (66%), Gaps = 11/692 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP + D++   LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           E  A++++E  +L+AI FGH E K ++    E I  +  +  K+  V   +D   +E+  
Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPI--KQEFVPVERDEDLVEKVK 247

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAK 301
           S    + L+ +    +K  R + +D LK+++V +F  E    NE    E+ ++  D+  +
Sbjct: 248 SLTEDKGLKDTVLTFDKQQRDENLDALKEEVVGHFLDEEDPENETLVKEVYAILNDLIKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   D Q
Sbjct: 308 EVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQ 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T  FPY
Sbjct: 368 LIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPY 427

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G
Sbjct: 428 TIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQG 487

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M   + +
Sbjct: 488 MEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQ 547

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P+V  M+I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A
Sbjct: 548 PREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQA 607

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            I  A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER+ K  
Sbjct: 608 MINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVE 667

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           DV+K GDT+ VK+ + D +G++  S KV++Q+
Sbjct: 668 DVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699


>gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii
           OhILAs]
 gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii
           OhILAs]
          Length = 706

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/693 (45%), Positives = 459/693 (66%), Gaps = 5/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V   EI  AGR L++E G++A+ S+G+ L  YG+T VL      +S ++G DFFPL+
Sbjct: 1   MFKVFKKEI--AGRVLEVEVGKLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ YA GKIPGG+++RE RP+EN IL SR+IDR IRPLF   Y+N+ Q+I  V+  
Sbjct: 59  VDYEEKMYAAGKIPGGFIKREGRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D++ +P +V+M+ +S AL +S +PF+GP     V  ++G+ ++NP  DE +  SLDL VS
Sbjct: 119 DIDCTPDIVAMLGSSIALSISDIPFQGPTASVHVGLVDGKLLINPTSDEREHSSLDLVVS 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV+M+E  AN+++E  +L+AI+F H E K +I  I ++A    KE   + + + ++
Sbjct: 179 GTKDAVMMIEAGANEVTEAQMLEAILFAHEEIKNIISFIEEIAAEVGKEKQEVVTLEINE 238

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
             E E+    K  +  +    EK  R  +I+   ++ ++YF  ++    N  +I ++ + 
Sbjct: 239 DFETEVRAYAKTRISEAIRTVEKLERNAKIELANEETINYFYEKYQEELNLKQIHTILDS 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  +  R ++L  K R D R  + +R IS +V LL +THGS LF RG TQ + +VTLG  
Sbjct: 299 ILKEETRNLILYDKKRPDDRQHDEIRPISCEVDLLPKTHGSGLFTRGQTQVLSIVTLGAI 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   +M HYNF P + GE   + +P RREIGHG LA RA+ P++P   
Sbjct: 359 GDVQILDGLGKEESKRYMHHYNFPPYSVGETKMLRSPGRREIGHGALAERALEPMIPSQD 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSE+  S+GSSS A+VCGS+L+L+DAGVP+   VAGIAMGLVK+GD   ILS
Sbjct: 419 DFPYAIRVVSEVLASNGSSSQASVCGSTLSLLDAGVPLKDMVAGIAMGLVKEGDAVAILS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  GITA+QMD+KI GI E I+  AL+QA+ GRL+IL++M +
Sbjct: 479 DIQGMEDHLGDMDFKVAGTAKGITAIQMDIKIKGIDEPILKDALEQARVGRLYILDKMKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S  R +L  + PR+  M I PD+IR VIG GGK I  I+E TG K++I++DGT+ IA+
Sbjct: 539 AISSPRPELSPYAPRMLKMKIHPDKIREVIGSGGKTINKIIEDTGVKIDIENDGTIFIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    E A  +I +I   PE+  I+KG+V+K+M+FGAFV     ++GLVHIS L+ ERV
Sbjct: 599 QTQEAGELALSIINNIVREPEIGDIFKGKVIKLMNFGAFVEILPGKEGLVHISNLAHERV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  DV+  GD + VK+++ D +GK+ LS K +
Sbjct: 659 NKVEDVLAVGDEIDVKVIEIDQQGKVSLSRKAL 691


>gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 712

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 320/693 (46%), Positives = 464/693 (66%), Gaps = 12/693 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+++ G+ LK+ETG +A+Q+ G+VL  Y +TVVL+     +  KD  DFFPLTV Y+E+ 
Sbjct: 7   ELDFCGKNLKVETGELAKQAGGSVLVRYEDTVVLSAATASKKAKD-IDFFPLTVTYEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+LRRE RP+E+  L SR+IDR+IRPLF++ ++NE QV+  V+  D +S+P 
Sbjct: 66  YSVGKIPGGFLRREGRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVDQDSAPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M  AS +LM+S +PFEGP+ G  V YI+  +V+NP L+E + S + L V+GT+DA+ 
Sbjct: 126 MAAMFGASLSLMVSDIPFEGPIAGVTVGYIDETFVINPTLEEQEKSKMHLIVAGTKDAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++SE+++L+A++FGH   K +     ++A+  AKE + +   +  S++ EE+ 
Sbjct: 186 MVEAGAEEVSEELMLEAMLFGHEWIKRLCAFQIEIAQEVAKEKMEVTLYEVPSEIVEEVE 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFEDI 298
            ++ +DLR +  I EK  R   ID+L++K V +F ++ S   E E       +  V   +
Sbjct: 246 ALVGKDLREAVAIHEKLKRYGMIDELEEKAVLHFEAK-SYETESEKHKTVKYVKEVTHGM 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
            A  VR ++  +K+R DGR  + VR ++ Q+ LL R HGS LF RG+TQ + V TLG   
Sbjct: 305 VADEVRRLISIEKIRPDGRGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCTLGAMA 364

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D LS      F+ HYNF P + GE  RMGAP RREIGHG L  RA+  V+P   +
Sbjct: 365 DTQIIDDLSDVDSKRFLHHYNFPPYSVGETGRMGAPGRREIGHGALGERALSYVIPSEEE 424

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+V+E+ ES+GSSS A++C  SLALM AGVP+   V+GIAMGLV+ GDD+ IL+D
Sbjct: 425 FPYTIRLVAEVLESNGSSSQASICAGSLALMAAGVPVKAAVSGIAMGLVQYGDDYTILTD 484

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT  GITA+QMD+KI G+SE+I+  AL QAK GR  ++  M +V
Sbjct: 485 IQGMEDHFGDMDFKVAGTKKGITALQMDIKIKGLSEDILREALAQAKTGRAEMMAAMDEV 544

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIAS 597
           +SE R  +GE+ P++  M I PD+IR+VIG GGK+I  I+E     K++I+DDG V I  
Sbjct: 545 ISEPRNFVGEYAPKIAQMNIKPDKIRDVIGAGGKIINQIIEDCNDVKIDIEDDGRVVIYH 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A I+ A+ MI +I  V  V +IY  +VV++  FGAFV+     D L+H+S++   RV
Sbjct: 605 TDQASIDKAKAMIENIVRVAAVGEIYDAKVVRIEKFGAFVNLFQGTDALLHVSKMDHNRV 664

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  D+VK GD V VK+++ D++G++ +S K +
Sbjct: 665 EKPEDIVKLGDIVKVKVMEIDEKGRVNVSRKAL 697


>gi|332685840|ref|YP_004455614.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
           ATCC 35311]
 gi|332369849|dbj|BAK20805.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
           ATCC 35311]
          Length = 713

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/706 (43%), Positives = 464/706 (65%), Gaps = 20/706 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTSWGGRPLQVEVGQLAKQANGAVLIRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGK+PGG+++RE RP+E+  L +R+IDR IRP+F++ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKVPGGFIKREGRPSESATLTARLIDRPIRPMFTEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF GP+ G +V  I+G+YVLNP +++ +Q  +DL V+
Sbjct: 120 EQDCSPAMAAMLGSSLALTISDIPFNGPIAGVEVGRIDGEYVLNPTVEQSNQSDIDLSVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++A+ MVE  A ++SE  +L A++FGH   K ++    ++ +   KE + I      +
Sbjct: 180 GTKEAINMVESGAEEVSESDMLGALLFGHAAIKELVAFQEEIRQAVGKEKMTIQ---LLQ 236

Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-------- 287
           ++ ++ + I  D    ++ +    EK  R + I  +K+++ + +S + S           
Sbjct: 237 VDPDLKKGIYTDYYETMKRAVMTEEKLAREENIQSVKEEVRNNYSEKFSEQEYEAQLSTE 296

Query: 288 ---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+  + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG
Sbjct: 297 EQLNNEVKQIVEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRG 356

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
            TQA+   TL    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L
Sbjct: 357 QTQALSACTLAPLGEHQIIDGLGIEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGAL 416

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
             RA+  ++P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAM
Sbjct: 417 GERALSQIIPSPEAFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAM 476

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GLV DG+++ IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL+QA
Sbjct: 477 GLVSDGENYTILTDIQGLEDHLGDMDFKVAGTKQGITALQMDIKIEGITEQILKEALEQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R+ ILNE++  L+E R +L ++ P++E++ I P +I++VIG GG+ I GI+E+TG K
Sbjct: 537 KKARMEILNELTSTLAEPRNELSQYAPKIEMVKIDPSKIKDVIGKGGETINGIIEETGVK 596

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID +G V IASS    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +D
Sbjct: 597 IDIDQEGNVSIASSDDIMIKRAIKIIEDLTKDVKVGQVYLGKVVRIEKFGAFVNLIKGKD 656

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            LVHISQL+ ERV    DVVK GD + VK+ + D +G+I  S K +
Sbjct: 657 ALVHISQLANERVKNVEDVVKVGDEILVKVTEIDKQGRINASRKAL 702


>gi|32490971|ref|NP_871225.1| polynucleotide phosphorylase/polyadenylase [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|81741772|sp|Q8D2Y0|PNP_WIGBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25166177|dbj|BAC24368.1| pnp [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 705

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 318/697 (45%), Positives = 470/697 (67%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG IARQ+  AV+    +T V  TVV D+  K GQ FFPLT
Sbjct: 1   MLKATIQKFQYGKNIVTIETGMIARQATSAVMVRMDDTSVFVTVVADKKEKLGQKFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTY++G+ PGG+ RRE RP ENE+L+SR+IDRS+RPLF K + N+ Q+I  VM  
Sbjct: 61  VNYQERTYSIGRFPGGFFRREGRPNENEVLVSRLIDRSVRPLFPKNFFNDIQIIATVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +VS++ ASAAL LSGLPF+ P+  +++ YI+ +Y+LNP   E   S LD+ VS
Sbjct: 121 NPQVNPDIVSIIGASAALSLSGLPFKCPIGSSRIGYIDNKYILNPTTSELIDSKLDMIVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G+ +AVLMVE  +N L E  +L+AI+FG+ + K VIE I KL K   KE +     D   
Sbjct: 181 GSSNAVLMVESSSNILQEKNILEAILFGNEQNKIVIENIDKLKKKFKKENL---EYDLKS 237

Query: 240 LEEEMSQMIKEDL-----RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           L     Q + EDL     + S  IPEK  R ++I+++K  +++ F + +++  E  +  +
Sbjct: 238 LNNNDIQFVIEDLFFDRIKDSYKIPEKKKRLEKIENIKNDILNNFINNNNTNEEEILY-I 296

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            ++I+ K+VR  ++  K R+DGR  + VR++   +G+L RTHGSSLF RG+TQA+V  TL
Sbjct: 297 IQNIERKIVRNRIISGKPRIDGRTEDMVRNLDIHLGILPRTHGSSLFTRGETQALVTTTL 356

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D L G + + F+ HYNF P   GEV  + +P RREIGHG+LA+R +  V+P
Sbjct: 357 GTERDAQNIDDLVGDKIDRFLFHYNFPPYCVGEVGIISSPKRREIGHGKLAKRGMLAVMP 416

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+RIVSEITES+GSSSMA+VCG+SL+LMDAGVPIS  VAGIAMGL+K+ D F+
Sbjct: 417 DIDKFPYTIRIVSEITESNGSSSMASVCGASLSLMDAGVPISSSVAGIAMGLIKEKDKFV 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDED+LG MDFKV GT  G+TA+QMD+KI GI+  I+ ++L +AK  R++ILNE
Sbjct: 477 VLTDILGDEDYLGDMDFKVMGTREGVTALQMDIKIEGITSEILQVSLDKAKNARINILNE 536

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M KV+ + + ++  F PR+  + I P++I++VIG GG VIR + E+T + + I+DDGTVK
Sbjct: 537 MDKVIKKPKNEISIFAPRIYKIKINPEKIKDVIGKGGSVIRMLTEKTKSSIEIEDDGTVK 596

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           + S+ +   + A + I+ IT   ++NKIY  ++ ++ +FG F      ++GL+H+S++  
Sbjct: 597 VISTDIKNAQCALKKIKDITHEIKINKIYVAKITRISEFGIFACLINNKEGLIHVSKIPY 656

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           ++ +  ++  K G  + VK+++ D  G+I+LS    D
Sbjct: 657 KKFSDINNNFKIGQIISVKVIEIDRYGRIRLSFTGTD 693


>gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           italicus Ab9]
 gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           italicus Ab9]
          Length = 700

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/687 (45%), Positives = 465/687 (67%), Gaps = 5/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ Q+I  ++  D + 
Sbjct: 64  ERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++GQ+V+NP  D+ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +L+AI++ H   K ++E I ++ +     K  +++   D  +LE
Sbjct: 184 AIVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVEEVGVPKSEVILHEID-KELE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     + +  +   PEK  R   +D ++++++ YF  E+   N  +I  V  +I  +
Sbjct: 243 EKVRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEEYPD-NLADIDEVLYNIMKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D Q
Sbjct: 302 QMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 ILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI G
Sbjct: 422 TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A++GRL+IL++M +V+ E
Sbjct: 482 IEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVIKE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PRV  M + P++IR++IG  GK I  I+ +TG K++I++DG + I +S L 
Sbjct: 542 PRKELSIYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVKIDIEEDGRLYITASDLK 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K  
Sbjct: 602 SGERAKQMIEAITKDITVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK GD + VK+ D D +G+I LS K
Sbjct: 662 DVVKVGDDILVKVTDIDKQGRISLSRK 688


>gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
 gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
          Length = 700

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 315/691 (45%), Positives = 461/691 (66%), Gaps = 7/691 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EIE  GR L +E G++A+Q++GAVL  YG+TVVL T     + ++G DFFPLTV+Y
Sbjct: 12  MQSFEIELGGRKLVIEHGKMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDY 71

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE RP+ + IL +R+IDR IRPLF   ++N+ Q++  V+  + +
Sbjct: 72  EEKMYAVGKIPGGFIKREGRPSNDAILCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 131

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS---LDLFVSG 180
           + P + +M+ AS AL +S +PF GP+ G +V YI+G++++NP   E Q S   L+L V+G
Sbjct: 132 NPPEIAAMIGASCALTVSDIPFMGPIAGVRVGYIDGEFIINP--TEQQRSVSELNLAVAG 189

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           + DAV+MVE  AN+LSE+VVLDAI+FGH E + ++E    +   C KE I+      S+ 
Sbjct: 190 SYDAVMMVEAGANELSEEVVLDAILFGHAEIRRLVEFQQNIRNTCGKEKIIPSIFTLSEE 249

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LE ++    +E L  +    +K  R   I  +K + + YF  E+    + EI  +   I+
Sbjct: 250 LESKVRSYAEERLDAATRNSDKLARDADIAGIKAEAIEYFVEEYPDAAK-EIAQILYKIE 308

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR ++  +K+R DGR  + +R +S +VG+L R HGS LF RG TQ + V TLG+  D
Sbjct: 309 KGIVRHMITHEKIRPDGRALDEIRPVSCEVGILPRAHGSGLFTRGQTQVLTVTTLGSIGD 368

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L       ++  YNF   + GE   M +P RREIGHG LA RA+ P++P   +F
Sbjct: 369 EQIIDGLGSETTKHYLHQYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEEF 428

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSM ++CGS+L+LM AGVPI +PV+GIAMGLV+DGD++ IL+DI
Sbjct: 429 PYTIRLVSEILESNGSSSMGSICGSTLSLMCAGVPIKRPVSGIAMGLVRDGDNYSILTDI 488

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL QAK+GR  IL +M + +
Sbjct: 489 QGMEDALGDMDFKVAGTSKGITAIQMDIKIAGITRDILAAALAQAKQGRAFILGKMLECI 548

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            +   +L  + PRVE + I  D+IR+VIG GGKV+R I+++TG  ++I +DG + I S +
Sbjct: 549 DKPAEELSPYAPRVETITIDVDKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFITSPN 608

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++ AR+MI  I    EV ++Y G+V + + FGAFV     ++GL HISQL+  RV  
Sbjct: 609 TEAMDRARKMIEDIVREVEVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHRVES 668

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D++G+I +S K +
Sbjct: 669 VEDVVKIGDQLEVKVIEIDEKGRINVSHKAL 699


>gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis FRI909]
          Length = 701

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/695 (45%), Positives = 465/695 (66%), Gaps = 17/695 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP + D++   LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246
           E  A++++E  +L+AI FGH E K ++    ++      +PI    ++F  +E  E++ +
Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHI--QPI---KQEFVPVERDEDLVE 244

Query: 247 MIK---ED--LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI 298
            +K   ED  L+ +    +K  R + +D LK+++V +F  E    NE    E+ ++  D+
Sbjct: 245 KVKRLTEDKGLKETVLTFDKQQRDENLDVLKEEVVGHFLDEEDPENETLVKEVYAILNDL 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   
Sbjct: 305 IKEEVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T  
Sbjct: 365 DYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQD 424

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+D
Sbjct: 425 FPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTD 484

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M   
Sbjct: 485 IQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHT 544

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P+V  M+I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I + 
Sbjct: 545 IEQPREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAV 604

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A I  A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER+ 
Sbjct: 605 DQAMINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERIN 664

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  DV+K GDT+ VK+ + D +G++  S KV++Q+
Sbjct: 665 KVEDVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699


>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
 gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
          Length = 704

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/687 (45%), Positives = 454/687 (66%), Gaps = 6/687 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGRPL +E G++A+Q++GAVL  YG+T VL+T    +S K   DFFPLTVNY+ER YA
Sbjct: 10  EWAGRPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKP-LDFFPLTVNYEERLYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE RP+E  IL SR+IDR IRP+F   ++NE QVI  VM +D + +  + 
Sbjct: 69  AGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMA 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +MV +S AL +S +PF+GP+ G QV YING++++NP +++ +Q ++ L V+G +DA+ MV
Sbjct: 129 AMVGSSLALAISDIPFDGPIAGVQVGYINGEFIVNPTVEQSNQSTIHLSVAGNKDAINMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEMSQ 246
           E  A ++ E+V+L+AI+FGH E K +I    ++     KE  P+ +   D   ++ ++  
Sbjct: 189 EAGALEVPEEVMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKKPVTLFEID-EAIQADIKA 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
             + D+  +    EK+ R + I  +K +++ SY   E       ++ ++ + +    VR 
Sbjct: 248 ACETDMHDAIQTAEKHARDEAIQAVKDRIIASYEEQEADDDTMKQVYTILDKMVKDEVRR 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            + + K+R DGR  + +R +S++ G+LQRTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 308 QITEDKIRPDGRKLDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGALGDVQIIDG 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P  + FPYT+R 
Sbjct: 368 LGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRC 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVP+  PVAGIAMGL+K G+ + IL+DI G EDH
Sbjct: 428 VSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTDIQGMEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S NI+  AL QAK GR+HIL  M   L+E R Q
Sbjct: 488 LGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLATLAEPRTQ 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L EF P++ I+ I PD+IR+VIG GGK I  I+E+TG K++ + DGT+ I+S++      
Sbjct: 548 LSEFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISSANEEMNAR 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V + Y   V ++  FGAF      +DGL+HIS++  ER  +  DV+K
Sbjct: 608 AKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKQVEDVLK 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            GD + VK+++ D +G++ LS KVV Q
Sbjct: 668 LGDQLLVKVIEIDKQGRVNLSRKVVLQ 694


>gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
 gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
          Length = 711

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/684 (44%), Positives = 453/684 (66%), Gaps = 17/684 (2%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           +ETG+ A+Q+ G+V+   G+T+VL T    +S + G DF PLT  YQE+TY+ GKIPG +
Sbjct: 17  IETGKWAKQASGSVVVRCGDTMVLVTATASKSPRVGMDFLPLTCEYQEKTYSAGKIPGNF 76

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            RRE+RP+ +E+L++R++DR  RPLF K ++ ETQ+I NV+  D  ++  V++M  +S A
Sbjct: 77  FRREARPSTDEVLVARLMDRPSRPLFPKLWRCETQLIANVVSFDQSNAADVLAMTGSSCA 136

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196
           L +S +P++GPV   +V  + G++V  P  +E +Q  +D+ VS ++DA++MVE    ++ 
Sbjct: 137 LHISDIPWDGPVAAVRVGRVAGEFVAFPTFEEREQSDIDMIVSASRDAIVMVEGGMREVP 196

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----SKLEEEMSQMIKED 251
           E V++DA++F H   +P+I+   KL     KE    ++  F     +K++E   + ++E 
Sbjct: 197 EQVLIDALLFAHEAVQPLIDLQEKLRAAVGKEKRPFEAPSFDQDLLAKVQESAWERVREA 256

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-------EIVSVFEDIQAKVVR 304
             V     EK+ R   + D+++ +V        +  E        E+   +E ++ +  R
Sbjct: 257 FEVR----EKHSRSAALSDVRRALVGELCGAQENATEAVYAGREDEVSEAYEKVKKRFAR 312

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
              LD K R+DGR  + +R IS +VG+L   HGS+LF RG+TQA+V  T+GTR DEQ +D
Sbjct: 313 LNTLDSKHRIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRYDEQKLD 372

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L G  +  F +HYNF P  TGE   + + SRRE+GHG LA R+I  V+P+   FPYT+R
Sbjct: 373 TLLGGMQKPFFLHYNFPPFCTGEAKPIRSTSRRELGHGNLAERSIAQVMPEREDFPYTVR 432

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEI ES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGL+ +G+ + ILSDI GDED
Sbjct: 433 VVSEILESNGSSSMASVCGASLSLMDAGVPVLSPVAGIAMGLMMEGERYAILSDILGDED 492

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           H+G MDFKV GT  G+ A+QMD+K+ G++ +I+V AL+QA+RGR+HIL++M++ L   R 
Sbjct: 493 HMGDMDFKVTGTARGVCALQMDIKLKGLTRDILVEALEQARRGRMHILDKMAEALQTPRE 552

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            L    PR+    + PD+IR++IG GGK IR I EQTGAK+++ D G V IASS    ++
Sbjct: 553 DLSPNAPRIVTETVKPDKIRDIIGPGGKTIRAIAEQTGAKIDVSDAGVVSIASSDSRSLQ 612

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A ++IR +T  PEV + Y G V ++++FGAFV      DGLVHIS+LS+ERV +  DV+
Sbjct: 613 QAIDIIRGLTMEPEVGQFYGGVVKRIVEFGAFVEILPGTDGLVHISELSSERVRRVEDVI 672

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           +EG+ + VK +  D  GKI+LS+K
Sbjct: 673 QEGEEIVVKCISVDRDGKIRLSLK 696


>gi|298528722|ref|ZP_07016126.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512374|gb|EFI36276.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 739

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 318/689 (46%), Positives = 464/689 (67%), Gaps = 10/689 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +  ETG++A Q+ G+VL   G+TVVL T V  + +++   FFPLTVNYQE +YA GKIPG
Sbjct: 19  INFETGKMANQAHGSVLVQSGDTVVLVTAVT-QPMENNPGFFPLTVNYQEMSYAAGKIPG 77

Query: 76  GYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
            Y RRE  RP+E E L+SR+IDRSIRPLF + + +E QV+  V+  D  + P ++++  A
Sbjct: 78  SYFRREIGRPSERETLVSRLIDRSIRPLFPETFNDEVQVMATVLSADPVNDPDILAISGA 137

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           SAAL +S +PF GP+ GA+V YI+ +++LNP L   DQ  L L V+ T++ V+MVE  A+
Sbjct: 138 SAALHMSKIPFMGPLAGARVGYIDDEFILNPSLKLLDQSDLSLMVASTRNGVVMVEGVAD 197

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS---KDFSKLEEEMSQMIKE 250
            + ED+V  AI +   +  P++++  +L   C +E + I +   +D  +LEE + +M   
Sbjct: 198 FVPEDIVARAIDWASQQVIPILDSQEELRSQCGREKMEIPAEPERDL-ELEEMVKEMAAG 256

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKVVRTVML 308
           DL  +     K  R     ++K+++ +    +    +E   +   +F+D++  ++R  + 
Sbjct: 257 DLARALETQGKMHRKNAKSEVKERVQASLQEKLGPESERLDKFGGIFKDLEKSIMREKIS 316

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
            +K+R+DGRD +TVR +S +VGLL RTHGS+LF RG+T A+ + TLG+  D Q++++LSG
Sbjct: 317 SEKIRIDGRDLKTVRPLSMEVGLLPRTHGSALFTRGETTALTIATLGSSTDIQHIETLSG 376

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                FM+HYNF P   GEV  +  PSRREIGHG LA RAI PVLP +  FP+T+R+VSE
Sbjct: 377 DSSKSFMLHYNFPPYCVGEVKFLRGPSRREIGHGVLAERAIQPVLPSSEDFPFTIRLVSE 436

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           I +S+GSSSMATVCG +LALMDAG+P+ +PVAGIAMGL+++ D++++L+DI GDEDHLG 
Sbjct: 437 IMDSNGSSSMATVCGGTLALMDAGIPVKEPVAGIAMGLIRENDEYLVLTDILGDEDHLGD 496

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKVAG+  GITA+QMD+KI GIS  IM  AL QA   R HIL++M +V+ E R +L  
Sbjct: 497 MDFKVAGSYDGITAVQMDIKISGISGEIMHQALDQALEARRHILDQMKQVIDEPRKELSP 556

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P++E++ +  ++I++VIG  GK I+ I  +TG+ ++I+D G + I + S   ++  +E
Sbjct: 557 FAPKMEVIHVDTNKIKDVIGPSGKHIKAITAETGSSIDIEDSGKISIFAPSEEILQKTKE 616

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           MI      PE+ K Y+G V +++DFGA V      DGLVHISQL T RV K SDVV  GD
Sbjct: 617 MILFYNQKPELGKDYEGVVTRLLDFGAVVEILPGLDGLVHISQLDTARVEKVSDVVNIGD 676

Query: 669 TVWVKLLDFDDRGKIKLS-MKVVDQNTGK 696
            + VK+++ DDRGK++LS M V+ +  GK
Sbjct: 677 KIKVKVIEIDDRGKVRLSRMAVLMEEQGK 705


>gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua
           Clip11262]
 gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262]
          Length = 723

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 317/702 (45%), Positives = 456/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++ SY + E  +  E  GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +SE R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701


>gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
 gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
          Length = 736

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/699 (45%), Positives = 459/699 (65%), Gaps = 19/699 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+  AGRPL LE GR+ARQ+  AVLA YG+TVVL T       ++G DFFPL V+Y+ER 
Sbjct: 10  EMILAGRPLVLEVGRVARQASSAVLAKYGDTVVLVTATMAPEPREGIDFFPLLVDYEERH 69

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+LRRE +P E  +L +R+IDRSIRPLF K  +N+  V+  ++  D   +P 
Sbjct: 70  YAVGKIPGGFLRREGKPGEKAVLSARLIDRSIRPLFPKKMRNDVHVVATILSVDQNCAPE 129

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186
           + +M+ ASAAL LS +PF GP+ G  V  ++G+ VLNP +++++ SL  L V+GT++AV+
Sbjct: 130 ITAMIGASAALTLSEIPFAGPIGGVIVGLVDGELVLNPTVEQEEKSLLHLVVAGTKEAVV 189

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK------MCAKEPIVIDSKDFSKL 240
           MVE  A ++ ED V++AI FGH   K +   I  L +      + + +      +   +L
Sbjct: 190 MVECGAREVPEDKVVEAIEFGHQTVKEIAAFIETLREEALALGLASPKKEFEFPEPPEEL 249

Query: 241 EEEMSQMIKEDLR-----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            E +  + +  LR      +    +K  R    ++LK ++V+    ++    E  I  + 
Sbjct: 250 REAVKAVAEPALREAYRWYASARLDKKARESHTENLKNELVAKLLEQYPE-EEATIKELI 308

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +I+ +VVR ++  +++R DGR  + +R +S +VGLL RTHGS+LF RG TQ + VVTLG
Sbjct: 309 AEIERRVVRELIAKERIRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLSVVTLG 368

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              DEQ +D L   +   FM HYNF P +TGEV  + +P RREIGHG L  RA+  V+P 
Sbjct: 369 AVGDEQILDDLDLEESKRFMHHYNFPPFSTGEVRPIRSPGRREIGHGALVERALEAVIPD 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GS+SMA+VC SSLALMDAGVPI  PVAGIAMGL+K+ D+FI+
Sbjct: 429 EDAFPYTIRVVSEVLESNGSTSMASVCASSLALMDAGVPIKAPVAGIAMGLIKEEDEFIV 488

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGT++GITA+QMD+KI G+++ I+  AL QA+  RL+IL  M
Sbjct: 489 LTDIQGLEDHLGDMDFKVAGTEAGITALQMDIKIAGVTKEILATALAQAREARLYILEVM 548

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + L   R +L  + PRV  + I PD+IR+VIG GGK IR I+E TG +++++DDG + I
Sbjct: 549 RRALPAPRPELSPYAPRVLSLVINPDKIRDVIGPGGKTIRKIIELTGVEIDVEDDGRIYI 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649
            + S +  + A E+I+++T    V ++Y G+V +V DFG FV           ++GLVHI
Sbjct: 609 TAPSESAGQQALEIIKNLTAEVAVGQVYLGRVTRVTDFGCFVEIIPGVLGLPGKEGLVHI 668

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SQ++  +  +  +VVKEGD V VK++ +D +G+++LS K
Sbjct: 669 SQMAPLKGKRIEEVVKEGDQVLVKVIGYDSQGRLRLSQK 707


>gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
 gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
          Length = 697

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 323/687 (47%), Positives = 456/687 (66%), Gaps = 12/687 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE +GR + +ETGRIA+Q++G+V+ T GETVVL T V    +++G DF PLTV YQE +Y
Sbjct: 6   IEISGRNIHVETGRIAKQANGSVVVTSGETVVLVTAVATDDVREGIDFLPLTVEYQEMSY 65

Query: 69  AVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           A G+IPG + RR+  RP E E LISR+IDR +RPLF   Y  ETQVI  V+  D E+   
Sbjct: 66  AGGQIPGNFFRRDMGRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEAD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +++M+ ASAAL +S +PF+GP+ G +V  I+G++V NP + + + S ++L V+G +D ++
Sbjct: 126 MLAMLGASAALEISDIPFQGPIAGVKVGRIDGEFVANPTISQQEESDINLIVAGNRDGIV 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKLE 241
           MVE  +  +SE  ++DAI +GH   +P+++    L K   K        V D+   +K+E
Sbjct: 186 MVEGGSRFVSESDMIDAIFYGHQAIQPMLDVQESLKKEVGKPKRSIPDEVADASLKTKVE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E    ++KE L +S    +K  R  +  D + ++V     E     + EI   F  ++ K
Sbjct: 246 EIGEPLLKEVLCIS----DKMDRQAKRRDAQNQVVDALLEEFEG-QKSEIKDFFHSLEKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+++LD+  R+DGR    VR I   VGLL R HGS+LF RG+TQA+V+ TLGT  D Q
Sbjct: 301 MVRSMILDEGKRIDGRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDRQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            ++S+ G +   F++HYNF P + GE  R+  P RREIGHG LARRA+ PVLP    F Y
Sbjct: 361 RIESIFGEELRSFILHYNFPPYSVGEAKRLSGPGRREIGHGALARRALLPVLPSEEDFQY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI   VAG+AMGLV +GD+ ++L+DI G
Sbjct: 421 CIRVVSEILESNGSSSMASVCGGCLSLMDAGVPIKDLVAGVAMGLVAEGDNVVVLTDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDH G MDFKV GT  GITA+QMD+KI  ++  IM  AL+QAK GRLHIL  M + +++
Sbjct: 481 DEDHYGDMDFKVTGTSEGITALQMDIKIERLTREIMEQALEQAKEGRLHILGCMKETIAQ 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ E+ P +  + I P+++R +IG GGK IR I   +GA++++DD+G V I+S    
Sbjct: 541 PRNEVSEYAPIITNVKISPEKVRILIGPGGKTIREICNVSGARIDVDDEGVVTISSPDKE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +AA +M++ I    E  K+Y+G+VVK+MDFGAFV      DGLVHISQL+ ERV K +
Sbjct: 601 CSDAAMKMVKEIVQEAEEGKLYQGKVVKIMDFGAFVEIFPGTDGLVHISQLAPERVNKVT 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DV+ EGD V VK+L+    G+I+LS K
Sbjct: 661 DVLNEGDEVLVKVLEVGKDGRIRLSRK 687


>gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 806

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 328/692 (47%), Positives = 461/692 (66%), Gaps = 11/692 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TVE+   G+ L  ETGR+A+Q+ GA L T GE+VVLAT V     K+G DFFPLTV+Y+E
Sbjct: 6   TVEL-TGGKKLHFETGRMAKQASGAALVTQGESVVLATAVAAPDPKEGIDFFPLTVDYRE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
             YA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQVI  V   D E+ 
Sbjct: 65  YAYAGGRIPGGFIKREGRPSEREILTSRQIDRPIRPLFPEGFRNETQVIALVFSADKEND 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
           P +V + AASAAL LS +PF GPV   +V Y+NG+YV+NP   E +  S+++ V GT D 
Sbjct: 125 PDIVGINAASAALALSDIPFAGPVGAVRVGYVNGEYVINPSYAERRDSSINITVVGTMDG 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK----- 239
           ++M+E  + ++ E+VVL AI FGH E K ++ AI++LA    K    + + +F +     
Sbjct: 185 IVMIESGSAEVPEEVVLGAIDFGHTEIKKIVAAINELAAKAGKTKRAVTAPEFDEAYFET 244

Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           L+ ++   + + L        E Y   KQI D     +   + E++   + ++   +E +
Sbjct: 245 LKNKIGARLADALDTKAHPKTESYALVKQIKDELAAEIP--ADENAGAAKKKLAHYYELL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+ R  +   +VR D R  + +R I+ +VG+L RTHGS+LF RG+TQA+V  TLGT +
Sbjct: 303 REKIFREQVTKDRVRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLGTND 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +++  G Q+  FM+HYNF P + GEV RM    RRE+GHG LA RAI  VLP   +
Sbjct: 363 DSQRLETFEGEQKKRFMLHYNFPPFSVGEVGRMTGVGRREVGHGALAERAISAVLPGEDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            PY LR+VS+I ES+GSSSMA+VCG+SLALMDAG+P+   VAG+AMGLVK+GD++ IL+D
Sbjct: 423 SPYALRVVSDILESNGSSSMASVCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAILTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+G EDH G MDFKVAGT  GITA+QMD+KI GI+  IM  A++QA+RGR+ +L++M ++
Sbjct: 483 IAGAEDHYGDMDFKVAGTRKGITALQMDIKISGITGQIMREAMEQARRGRMFLLDKMDEI 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  R +  +  P++  + IP D+IR++IG GGK IRGI+E T  K+++DD G V IASS
Sbjct: 543 LAAPREEKSKHAPQIRTVQIPTDKIRDLIGPGGKTIRGIIEATQVKIDVDDTGRVNIASS 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  MI  +T VPEV K Y G+VV++ +FGAFV      DGL+HIS+++  RV 
Sbjct: 603 DEEGLKKALAMINDLTAVPEVGKTYLGKVVRLAEFGAFVEIFPGTDGLLHISEIAEHRVK 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  D + EGD V VK+L  +   +IKLS K V
Sbjct: 663 EVKDELHEGDQVMVKVLGVEGN-RIKLSRKAV 693


>gi|158523039|ref|YP_001530909.1| polynucleotide phosphorylase/polyadenylase [Desulfococcus
           oleovorans Hxd3]
 gi|226702647|sp|A8ZZ59|PNP_DESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158511865|gb|ABW68832.1| Polyribonucleotide nucleotidyltransferase [Desulfococcus oleovorans
           Hxd3]
          Length = 721

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/689 (46%), Positives = 441/689 (64%), Gaps = 4/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E    G+P  ++TGR+A+Q+ GA L  YGET+VL TV      K+  DF PL+V YQ
Sbjct: 4   HVFEATVNGKPFTIKTGRLAKQAAGAALVQYGETIVLVTVAAATEPKEDADFLPLSVEYQ 63

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           E+ Y+ G+IPG Y RRE  RP+E E L  R+ DR IRPLF   Y  ETQVI  V+  D E
Sbjct: 64  EKIYSAGRIPGNYFRREIGRPSEKETLTCRLTDRPIRPLFPAGYTFETQVITTVLSMDRE 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+S+V ASAAL +S LPF+GP+   +V  +NG  V NP   E D   +++ V+G++
Sbjct: 124 NDPDVLSIVGASAALTISDLPFDGPLAAVRVGRLNGTLVANPTNTELDDCDINIVVAGSR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241
             V+MVE  +N +SE  +L+AI FGHN   P+I+   ++   C K + +++  +  ++LE
Sbjct: 184 SGVVMVEGGSNVVSEAEMLEAIFFGHNALLPLIDIQDQMRNACGKPKRVIVPPEKDTELE 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +++++ + +  +   PEK  R   +  +++ +        +     EI  +F D+  K
Sbjct: 244 TRIAELVGDAVAQAVTEPEKDARKSALSKVRENLFQGLGEAFADRKR-EIKGLFSDLVKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V R ++L++  R+DGR  + VR IS +VG+L RTHGS+LF RG+TQ + V+TLG+  DEQ
Sbjct: 303 VCRDIVLNQGRRIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLGVMTLGSGHDEQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            V++L G +   FM+HYNF P   GEV R+  PSRR+IGHG LA R I  VLP    F Y
Sbjct: 363 RVETLFGDETRPFMLHYNFPPFCVGEVKRVMGPSRRDIGHGNLAHRGISYVLPDKETFDY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSM TVC   LALMD GVPI  PV+GIAMGLV DGD   +LSDI G
Sbjct: 423 TIRLVSEVLESNGSSSMGTVCSCILALMDGGVPIKAPVSGIAMGLVADGDKVAVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDH G MDFKV GT+ GITA+QMD+KI  +S  I+  AL QAK GR+HIL +M + LS 
Sbjct: 483 DEDHFGDMDFKVTGTEKGITALQMDIKIKSLSREILEKALHQAKDGRIHILGKMLEALSH 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  +  + P++ I+ I PD+IR +IG GGKVIR +   +  ++ +DD GTVKIA+S+  
Sbjct: 543 YRDDISPYAPKIYIVKIHPDKIREIIGPGGKVIRELQAMSNTRIEVDDSGTVKIAASTEE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E   A + +  I  VPE  +IY+G+VV++ DFGAF+      DGL HIS+L    V   +
Sbjct: 603 EARIAIKAVEDIGRVPEPGEIYEGEVVRITDFGAFIQIKNGTDGLCHISELEHHHVKSVT 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD V VK+L+    GKI+LS K +
Sbjct: 663 DVVKMGDKVRVKVLEVSPEGKIRLSRKAL 691


>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 790

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 325/697 (46%), Positives = 461/697 (66%), Gaps = 12/697 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H   IE AGR L +ETGR+A  + GAV   YG+T+VL TVV +R  ++G DFFPLTV+Y
Sbjct: 11  IHERTIEVAGRRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDY 70

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RPTE  IL +R+ DR IRPLF K YK E QVI  V+  D E
Sbjct: 71  EEKMYAAGKIPGGFIKREGRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQE 130

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSG 180
           ++P V+S++ ASAALMLS +P+ GPV   ++  I+G+ V+NP   E Q     LD+ V+G
Sbjct: 131 NAPDVLSIIGASAALMLSPIPWAGPVGAVRIGDIDGELVVNP--TEHQLIDSKLDMVVAG 188

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T DAV+MVE EA+++SED  L+A++  H+E K ++    +L ++  KE       ++ ++
Sbjct: 189 TADAVMMVEGEADEISEDRFLEAVLLAHDEIKRIVAMQHELRELAGKEKWEFTPPEENTE 248

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSVF 295
           L++++ + I + L  + F P+K  R    D+LK+ ++++F+     E       E+  +F
Sbjct: 249 LKQQIEEYIGDRLVSAVFNPDKEQRLAATDELKQDVIAHFTEAPEGEEPVATVREVSEIF 308

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +   +VR  +L++  R DGR  + +R+I  + G+L R HGS++F RG TQA+ VVTLG
Sbjct: 309 DGLVKGLVRRTILERSERPDGRRPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLG 368

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  +EQ +D L   +   ++ HYNF P + GEV R+  PSRR+IGHG LA R++  VLP 
Sbjct: 369 TTSEEQLLDGLGIEESKRYLHHYNFPPFSVGEVRRLRGPSRRDIGHGALAERSLLAVLPD 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--F 473
              FPYT+R+VSEI  S+GS+SMA+VCGSSLALMDAGVPI  PVAG+AMGL+ D +   +
Sbjct: 429 EDVFPYTMRVVSEIVSSNGSTSMASVCGSSLALMDAGVPIRAPVAGVAMGLITDPETGRY 488

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGT  GIT +QMD+K+ GI+  IM  AL+QA+RGRL+IL+
Sbjct: 489 QILTDIQGIEDALGDMDFKVAGTAEGITGIQMDIKVMGITPEIMREALEQARRGRLYILD 548

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+ VL++ R ++  + PR+  + I PDQI  VIG GGKVIRGI E TGAK++I+DDGTV
Sbjct: 549 KMNAVLAQPRPEMSPYAPRIYRIQIRPDQIGEVIGPGGKVIRGIQEATGAKIDIEDDGTV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I++ +      A + I  +T VPEV  I+ G+V  ++  G FV     +DG +HIS+L 
Sbjct: 609 FISAVNEESARKAVDTIERMTKVPEVGDIFFGRVKTIIPSGCFVEILPGKDGFLHISELE 668

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             RV    DVV+ G  + V +      GKI LS K +
Sbjct: 669 PYRVNSVEDVVQVGQELNVVVTGIRPDGKINLSRKAL 705


>gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
          Length = 699

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/687 (45%), Positives = 458/687 (66%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G YV+NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E K ++    ++       K+  +   +D + +E+  + 
Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPEKQEFIPVERDEALVEKVKAL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D LK+++V++F  E    NE    E+ ++  D+  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDALKEEVVAHFIDEEDPENEALINEVYAILNDLVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + +   R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDHPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 KELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER+ K  DV
Sbjct: 610 DRAKEIIEDITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISKERINKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  GD++ VK+ + D +G++  S K +
Sbjct: 670 LNIGDSIEVKITEIDKQGRVNASHKAL 696


>gi|51246460|ref|YP_066344.1| polynucleotide phosphorylase/polyadenylase [Desulfotalea
           psychrophila LSv54]
 gi|81641366|sp|Q6AJY9|PNP_DESPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50877497|emb|CAG37337.1| probable polyribonucleotide nucleotidyltransferase [Desulfotalea
           psychrophila LSv54]
          Length = 692

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 327/693 (47%), Positives = 467/693 (67%), Gaps = 6/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  + VE +  G+ + +ETG++A+Q+ G+++ + G TVVL TVV  ++     DF PLT
Sbjct: 1   MF--NKVEADIDGKLISIETGKLAKQASGSIVISCGGTVVLVTVVGAKTSNPNVDFLPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           + YQE+  AVG++PG Y RRE  RP++ E+L  R+IDR +RPLF + Y++ETQVI  V+ 
Sbjct: 59  IEYQEKFSAVGRVPGNYFRREIGRPSDQEVLTCRIIDRPLRPLFPEGYRSETQVIATVLS 118

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D  +SP V+++  ASAAL +S +PF GPV G ++ YI+G+YVLNP   E +  S+DL V
Sbjct: 119 ADQVNSPDVLALTGASAALSISHIPFAGPVAGGRIAYIDGKYVLNPTFAELESSSMDLMV 178

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           + T++A++MVE +A++LSED +L AI F     +P+I    +L +    E IV++S    
Sbjct: 179 ACTRNAIVMVEGKADELSEDEILGAIFFAFENLQPLINLQDELQRANGLEKIVVESPVID 238

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ ++ ++    ++      +K  R K  DDLKK++V+   +E       EI S+  D
Sbjct: 239 AELKAKVVEIAAAGMQKVYTTVDKLERGKVYDDLKKEVVAQLDTEEG-LRASEISSLLSD 297

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            +   +R   ++  VR+ GR  + +RDIS++   L +THGS+LF RG+TQA+V  TLG+ 
Sbjct: 298 FKKTYLREKTVNTGVRIGGRAWDEIRDISSETEYLPKTHGSALFTRGETQALVTATLGSE 357

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D+Q V++L+G     FM+HYNF P   GE   +  PSRR+IGHG LA R +  VLP   
Sbjct: 358 RDKQRVETLNGETSRRFMLHYNFPPYCVGEARFLRGPSRRDIGHGTLATRGLEAVLPSEE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSEI ES+GSSSMA+VCG S+A+MDAGVP+ +PV+GIAMGL+K+G+   ILS
Sbjct: 418 DFPYAIRVVSEILESNGSSSMASVCGGSMAMMDAGVPLKRPVSGIAMGLIKEGEGVAILS 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKV GT  GITA+QMD+KI G+S +IM  AL QAKRGR+HIL EMSK
Sbjct: 478 DILGDEDHLGDMDFKVVGTCDGITALQMDIKIDGVSRDIMSNALDQAKRGRMHILEEMSK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E+R ++ E  P+  I  I  D+IR++IG GGK+I+ +  Q  AK+ +DD G VK+  
Sbjct: 538 GIAEARAEVVEHAPKYFIHKISQDKIRDIIGPGGKIIKELSAQYDAKIEVDDSGLVKMFV 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++ A  EA  E ++SIT   EV  +Y G+V  + DFGAFV      DGLVHIS+L+ ERV
Sbjct: 598 ANGALAEALVERVKSITAEVEVGAVYTGKVKTIKDFGAFVEILPGTDGLVHISELALERV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              +DVV EGDT+ VK+LD D+RG+I+LS K +
Sbjct: 658 KDVTDVVNEGDTIEVKVLDVDNRGRIRLSRKAL 690


>gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
 gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
          Length = 799

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 320/693 (46%), Positives = 457/693 (65%), Gaps = 15/693 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TVE+   G+ +  ETGRIA+Q+ GA   + G+ V+LAT V     K+G DFFPLTV Y+E
Sbjct: 6   TVEL-AGGKRITFETGRIAKQASGAAFTSSGDVVILATAVGAPDPKEGIDFFPLTVEYRE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
             Y  G+IPGG+++RE RP+E EIL  R+IDR  RPLF   Y+NETQVI  V   D E+ 
Sbjct: 65  TAYGGGRIPGGFIKREGRPSEKEILTCRLIDRPCRPLFPDGYRNETQVIAFVYSADKEND 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDA 184
           P V+++ AAS A+ LS LPF+GP+   +V  I+G +++NP   E + SL ++ V+GT+D 
Sbjct: 125 PDVIAINAASCAISLSDLPFQGPIGAVRVGLIDGNFIVNPTYTERKESLINIIVAGTKDG 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSK 239
           ++MVE  A ++ ED V+DAI FGH + K +   I +L     K      P+ ID   ++ 
Sbjct: 185 IVMVESGAKEIPEDKVIDAIEFGHEQVKLICAGIDELVAKAGKAKRIVNPVEIDDAFYND 244

Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQI-DDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           L+ ++   + + L    +   + Y + K+I D+LKK +      E  +    ++   +E 
Sbjct: 245 LKSKVYDRVADALDTQKYAKIDSYAKIKEIKDELKKAL-----PEGDAAASKKLSKYYEL 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ ++ R  +   ++R D R  + +R I  +VG+L RTHGS+LF RG+TQA+V  TLGT 
Sbjct: 300 LREEIFRNQVTKDRIRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGTG 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +D Q ++S  G Q+  FM+HYNF P + GEV RM   SRRE+GHG LA RAI  VLP  A
Sbjct: 360 DDAQRMESYEGEQKKRFMLHYNFPPYSVGEVGRMTGTSRREVGHGALAYRAIEAVLPPEA 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + PYTLR+VS+ITES+GSSSMA+VCG+SLALM AG+ +   VAG+AMGLVK+GD + IL+
Sbjct: 420 ESPYTLRVVSDITESNGSSSMASVCGASLALMQAGISLKGSVAGVAMGLVKEGDSYAILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI+G EDH G MDFKVAGT +GITAMQMD+KI GI+  IM  A++QA+ GRL +L++M  
Sbjct: 480 DIAGAEDHYGDMDFKVAGTRNGITAMQMDIKIMGITPQIMREAMEQARHGRLFLLDKMDA 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++ +  +   + P++  + IP D+IR++IG GGK+IRGIVE T  K+++DD G V IAS
Sbjct: 540 VIASANEEKSRYAPQIRTLQIPTDKIRDLIGPGGKIIRGIVEATQVKIDVDDTGRVSIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    +  A +M+  IT VPE+ K Y G+VV++ +FGAFV      DGL+H+S+++  RV
Sbjct: 600 SDPDNLARAIQMVSDITAVPEIGKTYLGKVVRLAEFGAFVEIFPGTDGLLHVSEIAEHRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +  D ++EGD V VK+L  +   +IKLS K V
Sbjct: 660 KEVKDELREGDQVLVKVLAIEGN-RIKLSRKAV 691


>gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 707

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/709 (44%), Positives = 463/709 (65%), Gaps = 20/709 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+E+E AGR LK+ TG+IARQS GAV+  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  L++R+IDR IRP+F + +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D +++P  + ++ +S AL +S +PF GPV G  V YI+G+++LNP  ++ +Q  LDL V+
Sbjct: 121 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSLLDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K +     +  K+C KE I  + ++   
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 240

Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286
           +   +S  I+E+    L+ +     K  R + +D L+++++S F  +             
Sbjct: 241 V---ISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIEKQYPDVAEEEIPEE 297

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   + D+  K+VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+T
Sbjct: 298 PILAFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGET 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT++DEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA 
Sbjct: 358 QSLATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+  V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL
Sbjct: 418 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA  
Sbjct: 478 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHV 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R  IL  M+  +S S   L    PR++ + IP D+I  +IG GGK I+GI+E+TG+ ++
Sbjct: 538 ARQQILEVMNAAIS-SPADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTID 596

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I DDG V I S  L  +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL
Sbjct: 597 ITDDGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 656

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694
           +HIS++S ERVA   DV+K GD   VK++  D+ GKI LS K ++ +NT
Sbjct: 657 LHISEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLEMENT 704


>gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Puerto Rico]
          Length = 805

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 333/703 (47%), Positives = 470/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E+ ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDESVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    + +V     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292
             K+  ++S    E   V+     K  R  Q+D  ++ + S    +H      + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++   D+  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701


>gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
          Length = 706

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/692 (46%), Positives = 462/692 (66%), Gaps = 6/692 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D H   +EWAGR L +E G++A+Q++GAVL  YG+TVVL+T    +  K+  DFFPLTVN
Sbjct: 4   DKHVYSLEWAGRKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPKN-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++N+ QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
             S  + +M  +S AL +S +PF GP+ G  V  I+G++++NP +D+ + S + L V+GT
Sbjct: 123 NCSSEMAAMFGSSLALSVSDIPFGGPIAGVSVGRIDGEFIINPSVDQAEKSDISLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSK 239
           +DA+ MVE  A+++ E+ +L+AI+FGH E K +I    ++A    KE   IV+   D   
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIASEIGKEKMEIVLYQVD-QD 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDI 298
           LE E+  + ++D+  +  + EK+ R   I  +K+++ + +  E +  ++  +I  + + I
Sbjct: 242 LEAEVRGICEKDMIQAIQVQEKHAREAAIKAVKEQITAKYEGEEADDDKLKQIRQILDKI 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               VR ++ + KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   
Sbjct: 302 VKAEVRRLITEDKVRPDGRGLDVIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALG 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+ P++P    
Sbjct: 362 DVQILDGLGIEEEKRFMHHYNFPNFSVGETGPIRGPGRREIGHGALGERALEPIIPSEKD 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + IL+D
Sbjct: 422 FPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTD 481

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL+ M   
Sbjct: 482 IQGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKKGRMQILDSMLST 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L E+ P++ +M+I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S 
Sbjct: 542 IGQPRKELSEYAPKILMMSINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSV 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV 
Sbjct: 602 DEEMNQKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERVG 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DVV  GD + VK+ + D +G++ LS K V
Sbjct: 662 KVEDVVSIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 697

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 315/687 (45%), Positives = 457/687 (66%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWA +PL +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWANQPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF   Y+++ Q+I  V+  D   SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADPNCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQM 247
           E  A++++E  +L+AI+FGH E K +     ++ A +  ++   I  +    L + ++QM
Sbjct: 190 EAGASEITEAEMLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFIPEEKNQTLIDSVTQM 249

Query: 248 IK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303
            K E+L  +    +K  R   +D +K+++++ F +E    NE    E+ ++   +    V
Sbjct: 250 TKDENLNGAIQTFDKQERDANLDAIKERILANFENEEDPENEALLKEVGTIINTLIKDEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R +S++VGLL R HGS LF RG TQA+ V+TLG+  + Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P    FPYT+
Sbjct: 370 DGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDEKTFPYTV 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   + + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G+++ ++  AL+QA++GRL IL  M + + + R
Sbjct: 490 DALGDMDFKVAGTTEGITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMMQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+VEIM I P++IR+VIG GGK I  I++ TG K++I+ DGTV I S+    I
Sbjct: 550 KELSAYAPKVEIMQIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIGSTEQDMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             AR  I SI    EV ++Y  +V ++  FGAFV     +D LVHISQ+S ER+ K  DV
Sbjct: 610 NQARAWIESIVREAEVGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISNERINKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  GDT+ VK+ + D +G++  S KV+
Sbjct: 670 LNMGDTLKVKVTEIDKQGRVNASHKVL 696


>gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius ED99]
          Length = 697

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 315/687 (45%), Positives = 457/687 (66%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWA +PL +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWANQPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF   Y+++ Q+I  V+  D   SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADPNCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQM 247
           E  A++++E  +L+AI+FGH E K +     ++ A +  ++   I  +    L + ++QM
Sbjct: 190 EAGASEITEAEMLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFIPEEKNQTLIDSVTQM 249

Query: 248 IK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303
            K E+L  +    +K  R   +D +K+++++ F +E    NE    E+ ++   +    V
Sbjct: 250 TKDENLNGAIQTFDKQERDANLDAIKERILANFENEEDPENEALLKEVGTIINTLIKDEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R +S++VGLL R HGS LF RG TQA+ V+TLG+  + Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P    FPYT+
Sbjct: 370 DGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDEKTFPYTV 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   + + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G+++ ++  AL+QA++GRL IL  M + + + R
Sbjct: 490 DALGDMDFKVAGTTEGITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMMQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+VEIM I P++IR+VIG GGK I  I++ TG K++I+ DGTV I S+    I
Sbjct: 550 KELSAYAPKVEIMQIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIGSTEQDMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             AR  I SI    EV ++Y  +V ++  FGAFV     +D LVHISQ+S ER+ K  DV
Sbjct: 610 NQARAWIESIVREAEVGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISNERINKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  GDT+ VK+ + D +G++  S KV+
Sbjct: 670 LNMGDTLKVKVTEIDKQGRVNASHKVL 696


>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
 gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
          Length = 714

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 313/688 (45%), Positives = 454/688 (65%), Gaps = 10/688 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  V IE  GRP++ +TG++A+Q+DG+VL + G+T+VL T V     ++  DFFPL V Y
Sbjct: 3   ISEVAIEVGGRPMRFQTGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG+++RE +PT+ EIL +R+ DRSIRP+F K ++N+ QVI  V+  D E
Sbjct: 63  RERAYAAGKIPGGFIKREGKPTDEEILKARVTDRSIRPIFPKGFRNDVQVIAFVISADQE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P V+++  ASAAL +S +PFE PV   +V  ++G+ V+NP  +E Q   +DL VSGT+
Sbjct: 123 NDPAVLAINGASAALHISRIPFEKPVGAVRVARVDGKLVINPSYEERQRADIDLIVSGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DAV+MVE  A ++ E+ VLDAI+  H E K +++A  +L  +  K      + +     +
Sbjct: 183 DAVVMVEGGAKEVPEEEVLDAILLAHEEIKKIVKAQDELRNLAGKPKYQFVAPELDPATK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDI 298
           E + Q + E +     I +K+ R +++ +LK+ M+   +    +H    E      F + 
Sbjct: 243 ERIKQWVFERIEPVITIKDKHERREKLRELKELMLIELNIPEEDHHLAKEA-----FNEA 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + VR ++L++ VR+DGR  + +R IS +VGLL R HGS+LF RG TQA+V  TLGT E
Sbjct: 298 EKEFVRKMVLERGVRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPE 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q V+ L   ++  FM+HYNF P   GE+S M  P RREIGHG LA RA+ PV+P   +
Sbjct: 358 EYQLVEGLMPEEQKRFMLHYNFPPFCVGEISPMRGPGRREIGHGALAERALAPVIPPEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VS+I ES+GSSSMATVCG SL+LMDAGVPI   VAGIAMGL+ +GD F++LSD
Sbjct: 418 FPYVIRVVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLIMEGDKFVVLSD 477

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  G+TA+QMD+K+ GIS  ++  AL+QA+RGR+ IL++M  V
Sbjct: 478 ILGDEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISREVLSKALEQARRGRMFILDKMDAV 537

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R +L  + PR+    I P++ R++IG  GK I+ I+++ G K+ I +DGTV +++ 
Sbjct: 538 ISEPRKELSPYAPRIVTTKIDPEKTRDLIGPSGKTIKTIIDKAGVKITIKEDGTVLVSAP 597

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S      A +MI  +T   EV   Y G+V +V ++GAFV     + GLVHIS+L  E   
Sbjct: 598 SEEAAAQALKMIEDVTKDLEVGNTYLGKVTRVENYGAFVELAPGKVGLVHISKLPPELRE 657

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
              + +K  D + VK+++FD  G+ KLS
Sbjct: 658 NIFEKIKVSDLIPVKIVEFDQFGRPKLS 685


>gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           sphaericus C3-41]
 gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus
           sphaericus C3-41]
          Length = 704

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/687 (45%), Positives = 454/687 (66%), Gaps = 6/687 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGRPL +E G++A+Q++GAVL  YG+T VL+T    +S K   DFFPLTVNY+ER YA
Sbjct: 10  EWAGRPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKP-LDFFPLTVNYEERLYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE RP+E  IL SR+IDR IRP+F   ++NE QVI  VM +D + +  + 
Sbjct: 69  AGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMA 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +MV +S AL +S +PF+GP+ G QV YI+G++++NP +++ +Q ++ L V+G +DA+ MV
Sbjct: 129 AMVGSSLALAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNQSTIHLSVAGNKDAINMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEMSQ 246
           E  A ++ E+V+L+AI+FGH E K +I    ++     KE  P+ +   D   ++ ++  
Sbjct: 189 EAGALEVPEEVMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKKPVTLFEID-EAIQADIKA 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
             + D+  +    EK+ R + I  +K +++ SY   E       ++ ++ + +    VR 
Sbjct: 248 ACETDMHDAIQTAEKHARDEAIQAVKDRIIASYEEQEADDDTMKQVYTILDKMVKDEVRR 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            + + K+R DGR  + +R +S++ GLLQRTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 308 QITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDG 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P  + FPYT+R 
Sbjct: 368 LGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRC 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVP+  PVAGIAMGL+K G+ + IL+DI G EDH
Sbjct: 428 VSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTDIQGMEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S NI+  AL QAK GR+HIL  M   L+E R Q
Sbjct: 488 LGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLATLAEPRKQ 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L EF P++ I+ I PD+IR+VIG GGK I  I+E+TG K++ + DGT+ I+S++      
Sbjct: 548 LSEFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISSANEEMNAR 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V + Y   V ++  FGAF      +DGL+HIS++  ER  +  DV+K
Sbjct: 608 AKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKQVEDVLK 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            GD + VK+++ D +G++ LS KVV Q
Sbjct: 668 LGDQLLVKVIEIDKQGRVNLSRKVVLQ 694


>gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           J1-023]
          Length = 723

 Score =  615 bits (1586), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 316/702 (45%), Positives = 454/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++ SY + E  +  E  GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I    L QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQIXXXXLTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +SE R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701


>gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
 gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
          Length = 707

 Score =  615 bits (1585), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/709 (44%), Positives = 464/709 (65%), Gaps = 20/709 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+E+E AGR LK+ TG+IARQS GAV+  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  L++R+IDR IRP+F + +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++ +S AL +S +PF GPV G  V YI+G+++LNP  ++ + SL DL V+
Sbjct: 121 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSLLDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K +     +  K+C KE I  + ++   
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 240

Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286
           +   +S  I+E+    L+ +     K  R + +D L+++++S F ++             
Sbjct: 241 V---ISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIAKQYPDVAEEEIPEE 297

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   + D+  K+VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+T
Sbjct: 298 PILAFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGET 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT++DEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA 
Sbjct: 358 QSLATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+  V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL
Sbjct: 418 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA  
Sbjct: 478 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHV 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R  IL  M+  +S S   L    PR++ + IP D+I  +IG GGK I+GI+E+TG+ ++
Sbjct: 538 ARQQILEVMNTAIS-SPADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTID 596

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I DDG V I S  L  +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL
Sbjct: 597 ITDDGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 656

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694
           +HIS++S ERVA   DV+K GD   VK++  D+ GKI LS K ++ +NT
Sbjct: 657 LHISEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLELENT 704


>gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
          Length = 752

 Score =  615 bits (1585), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 309/686 (45%), Positives = 454/686 (66%), Gaps = 12/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E AGRPL +E G++A+Q++G+ L  YG+TV+LAT    +  + G DFFPL V+++ER YA
Sbjct: 17  ELAGRPLIVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE +P+E  IL  R+ DR +RPLF K Y+N+ Q+I+  + +D + SP + 
Sbjct: 77  AGRIPGSFFRREGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIA 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
            ++ AS AL +S +P+ GPV   +V  ++G+ V+NP   + + S LDL V+GT+DA+ MV
Sbjct: 137 GIIGASVALGISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSRLDLTVAGTKDAINMV 196

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSKLEEEMS 245
           E  A+++ E  +LDAI  GH E K ++E    +   C K   EP++ +      +   + 
Sbjct: 197 EAGAHEVPEATILDAIFRGHEEIKKLVEFQEAIIAQCGKPKAEPVLYEPD--PAVAAAVR 254

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSVFEDIQAKVV 303
               E LR +   P+K  R + +D++KK  +     E   + EGE  I  V +D+  ++V
Sbjct: 255 TRYTERLRAAINHPDKQAREQAVDEVKKAALEELLPE---FPEGEMDIKHVLDDVLKEIV 311

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L++ +R DGR  + +R I  +VGLL R HGS LF RG TQ + V +LG   D Q +
Sbjct: 312 RSQILEEGIRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQML 371

Query: 364 DSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           D+L   +    +M HYNF P +TGEV+ + APSRREIGHG LA RA+ PVLP   +FPYT
Sbjct: 372 DTLGQIEEFKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELEFPYT 431

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GS+SMA+ CGS+LALMDAGVPI  PVAG+AMGL+K+GD F +L+DI G 
Sbjct: 432 IRLVSEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQGI 491

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI G+   ++  AL+QA+ GRL IL +M +V+ + 
Sbjct: 492 EDHLGDMDFKVAGTREGVTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKMLEVIDKP 551

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + PR+ IM IP ++IR VIG GG+++  I ++ G K++I+DDG V I++ +   
Sbjct: 552 RPELSPYAPRIIIMQIPVEKIREVIGPGGRMVNRIADECGVKIDIEDDGKVYISAQTQQG 611

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E A+E I  I    EV  +Y G+V ++M FGAFV     ++GLVH+S+L+ +RV +  D
Sbjct: 612 GEKAKEWIEQIVADVEVGSVYLGKVTRLMTFGAFVEILPGKEGLVHVSRLAPQRVPRVED 671

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +V+ GDTV VK+++ DD G++ LS K
Sbjct: 672 MVRPGDTVLVKVVEIDDLGRVNLSRK 697


>gi|257080529|ref|ZP_05574890.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           E1Sol]
 gi|256988559|gb|EEU75861.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           E1Sol]
          Length = 704

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 457/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+  +    ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDVYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. St. Maries]
 gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           St. Maries]
          Length = 805

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 333/703 (47%), Positives = 469/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    + +V     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292
             K+  ++S    E   V+     K  R  Q+D  ++ + S    +H      + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++   D+  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701


>gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp.
           3_1_5R]
          Length = 743

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 319/709 (44%), Positives = 464/709 (65%), Gaps = 20/709 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+E+E AGR LK+ TG+IARQS GAV+  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 37  MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 96

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  L++R+IDR IRP+F + +  +  ++  V   
Sbjct: 97  VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 156

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++ +S AL +S +PF GPV G  V YI+G+++LNP  ++ + SL DL V+
Sbjct: 157 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSLLDLSVA 216

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K +     +  K+C KE I  + ++   
Sbjct: 217 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 276

Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286
           +   +S  I+E+    L+ +     K  R + +D L+++++S F ++             
Sbjct: 277 V---ISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIAKQYPDVAEEEIPEE 333

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   + D+  K+VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+T
Sbjct: 334 PILAFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGET 393

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT++DEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA 
Sbjct: 394 QSLATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 453

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+  V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL
Sbjct: 454 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 513

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA  
Sbjct: 514 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHV 573

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R  IL  M+  +S S   L    PR++ + IP D+I  +IG GGK I+GI+E+TG+ ++
Sbjct: 574 ARQQILEVMNTAIS-SPADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTID 632

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I DDG V I S  L  +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL
Sbjct: 633 ITDDGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 692

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694
           +HIS++S ERVA   DV+K GD   VK++  D+ GKI LS K ++ +NT
Sbjct: 693 LHISEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLELENT 740


>gi|323705394|ref|ZP_08116969.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535296|gb|EGB25072.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 700

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 307/684 (44%), Positives = 456/684 (66%), Gaps = 5/684 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E++ AGR L ++TG++A+ ++G+ L  YG+TVVL T    +  ++G DFFPL+V+Y+ER 
Sbjct: 6   ELDLAGRKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +PTE  IL SR+IDR IRPLF   Y+N+ QVI  V+  D +  P 
Sbjct: 66  YSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVL 186
           +V+M+ +S AL +S +PF GP     V  ++G +++NP L+  ++  L L VSGT+DA++
Sbjct: 126 IVAMIGSSVALSISDIPFNGPTGSVSVALVDGNFIINPDLEAREKSDLHLTVSGTKDAIM 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEM 244
           MVE  AN++ E+V+LDAI++ H   K ++E I  + K     K  +++   D   LE+++
Sbjct: 186 MVEAGANEVPEEVMLDAIMYAHEYIKQIVEFIEGIVKEVGLPKAEVIVHEID-DNLEQQV 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            +   E +  +    EK  R   ID ++++++ +F  E+   N  +I  V   I  + +R
Sbjct: 245 REFATEKIYNALRTEEKKERNDNIDKVEEEVLEHFKDEYPD-NLEDIDEVLYTITKEQMR 303

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++K+R+DGR  + +R I+  VG+L RTHGS++F RG TQ + V TLG   D Q +D
Sbjct: 304 KMITEEKIRVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQILD 363

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   +M HYNF P + GE   +  P RREIGHG LA RA+ P++P   +FPYT+R
Sbjct: 364 GLGDEESKRYMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIR 423

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   IL+DI G ED
Sbjct: 424 LVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDIVSILTDIQGIED 483

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT+ GITA+QMD+KI GI  +I+ +AL++A++GRL ILN+M + + E R 
Sbjct: 484 FLGDMDFKVAGTEKGITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLETIKEPRK 543

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + PR+  + + P++IR++IG GGK I  I+  TG K++I+DDG V I+S+ L   E
Sbjct: 544 ELSPYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVKIDIEDDGRVFISSTDLKAGE 603

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+ +I +IT   EV  IY G+V ++  FGAFV     ++GLVHIS+L  + V K  DVV
Sbjct: 604 KAKMIIEAITKDVEVGSIYLGKVTRLASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVV 663

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
             GD + VK+ + D +G+I LS K
Sbjct: 664 NIGDEILVKVTEIDKQGRINLSRK 687


>gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
          Length = 703

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 326/692 (47%), Positives = 463/692 (66%), Gaps = 21/692 (3%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGRPL +ETG++A+Q++GAVL  YG+TVVL+T    +  +D  DFFPL VNY+E+ YA
Sbjct: 11  EWAGRPLIIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-VDFFPLMVNYEEKLYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP E+  L SR+IDR IRPLF K Y+++ QVI  VM  D ++SP + 
Sbjct: 70  AGKIPGGFNKREGRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDPDNSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PFEGP+ G  V  ++G+ ++NP + + + S LDL V+G  DAV MV
Sbjct: 130 AMIGSSMALAVSDIPFEGPIAGVNVGLVDGELIINPDVQQREVSVLDLQVAGHFDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIE----AISKLAKMCAK-EPIVIDSKDFSKLEEE 243
           E  A +++ED +L+AI+FGH E K ++E     I ++  + ++  P+ +D+   SK+E+ 
Sbjct: 190 EAGAKEVAEDKMLEAIMFGHAEIKKLVEFQQSIIDEIQPVKSEFVPVEVDADLESKVEQ- 248

Query: 244 MSQMIKEDLRVSCFIP--EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---FEDI 298
               + E   +S  I   EK  R + I  +K K++  F  E    +E  I +V   F+ +
Sbjct: 249 ----LSESFGLSQAIQTQEKLAREENITAIKLKVIEAFEGE----DEAVITAVNKKFDAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR ++ ++KVR DGR  + +R + ++VG+L R HGS LF RG TQA+ V TLG   
Sbjct: 301 IKEEVRRLITEEKVRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALG 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D L   +   +M HYNF   + GE   + AP RREIGHG L  RA+  V+P   +
Sbjct: 361 EHQIIDGLGVEEEKRYMHHYNFPNFSVGETGPIRAPGRREIGHGALGERALLQVIPDEKE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   +++ ILSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI G++E+I+  AL+QA+ GRLHI+  M   
Sbjct: 481 IQGMEDALGDMDFKVAGTKEGITAIQMDIKINGLTEDILREALEQARVGRLHIMEHMLST 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R +L ++ P++EI+ I PD+IR+VIG GGK I  I++ TG K++I+ DGTV I SS
Sbjct: 541 ISEPRAELSQYAPKIEIIHINPDKIRDVIGPGGKKINEIIDATGVKLDIEQDGTVFIGSS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             + IEAA+++I +I    EV +IY   V ++  FGAFV     +D LVHISQ++ ER+ 
Sbjct: 601 DASMIEAAKKLIENIVREAEVGQIYMATVKRIEKFGAFVEIFPGKDALVHISQIALERIN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DVVK GD   VK+ + D +G++  S KV+
Sbjct: 661 KVEDVVKLGDQFLVKVTEIDKQGRVNASRKVL 692


>gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum
           reducens MI-1]
 gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           reducens MI-1]
          Length = 740

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 323/711 (45%), Positives = 461/711 (64%), Gaps = 30/711 (4%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           EI   GR L LETGR+A+Q+ GAVL TYGETVVL T    ++ +D  DFFPLTV+Y+ER 
Sbjct: 10  EISLGGRTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNTRD-IDFFPLTVDYEERL 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RP+E  IL  R+IDR IRPLF K  +NE QV+  VM  D +++P 
Sbjct: 69  YAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVMSVDQDNAPE 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ ASAAL +S +P + P+ G  V  ++GQ+V+NP + + + S + L V+GT DAV+
Sbjct: 129 IAAMIGASAALHISKIPLKKPIGGVIVGRVDGQFVINPMVRQAENSDMHLVVAGTDDAVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAIS-----KLAKMCAKEPIVIDSKDF-SKL 240
           MVE  A ++ E  +L+ I++GH + K +++ I       L    A E + I    F S +
Sbjct: 189 MVEAGAKEVPESEMLEGIMYGHEKVKEIVKFIEDFRTEALGMGLAFEKMEIPEPQFDSNM 248

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----------EHSSWNEGE 290
            E +  + +E +R      E  + C +    KK+   Y             E    N  E
Sbjct: 249 SEAILTIAEEAIR------EAVLHCSREKLTKKQREVYMDEVMSGLQEKFLEQFPENPKE 302

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           +  + E  + KVVR ++   K+R+DGR  + +R IS +VG+L RTHG+ LF RG TQ + 
Sbjct: 303 VTMLIEKAEKKVVRRIITHDKLRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILS 362

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TLG+  +EQ +D L   +   +M HYNF P +TGE   M +P RREIGHG LA RA+ 
Sbjct: 363 VATLGSISEEQILDGLGVEESKRYMHHYNFPPFSTGETKPMRSPGRREIGHGALAERALE 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P++P    FPYT+R+VSE  ES+GS+SM +VCGS+L+LMDAGVP+  PVAG+AMGL+ + 
Sbjct: 423 PMIPPEEVFPYTIRVVSEAIESNGSTSMGSVCGSTLSLMDAGVPLKAPVAGVAMGLIMEE 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D F +L+DI G EDHLG MDFKVAG+ +G+TA+QMD+KI GI+  +   AL+QA RGR+ 
Sbjct: 483 DQFTVLTDIQGLEDHLGDMDFKVAGSANGVTALQMDIKIPGITREVFEQALEQAHRGRMF 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M +VLS  R ++    P +   +I PD+IR++IG GGK+I+ +VE+TGA ++I+DD
Sbjct: 543 ILGKMLEVLSTPRAEISVHAPAIIRTSIHPDKIRDIIGPGGKIIKKLVEETGADIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARD 644
           G V IA+    + + A E+I+SIT   +V K+Y G+V +V DFG FV           ++
Sbjct: 603 GRVFIAAVDREKGKRALEIIQSITAEVQVGKLYNGKVTRVTDFGCFVEVIPGVMGLPGKE 662

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           GLVHISQL+ +RV KT D+VKEG+ + VK + +D +G++KLS K   ++ G
Sbjct: 663 GLVHISQLAFQRVEKTEDIVKEGEVIAVKAIGYDQQGRLKLSKKEAMRDMG 713


>gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
           F0421]
 gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
           F0421]
          Length = 700

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/689 (43%), Positives = 460/689 (66%), Gaps = 12/689 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HTV  +     L LETGR+A+Q++GA+ A +G + VLATV      ++G D+ PLTV+Y 
Sbjct: 3   HTVSYKIGDSELILETGRLAKQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF K +  + Q+I   +  D+ +
Sbjct: 63  EKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEKDFGRDIQIIPTCVSSDMIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++++A+SAA+++S +PF GPV  A++ Y+NG+YV+NP   + D+  +++ V+GT++
Sbjct: 123 PPDILAVIASSAAVVISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEMEIVVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFS 238
            + MVE  A+++SE+V+L A+   H   K + +   +L   C KE     P+ ++ ++  
Sbjct: 183 GITMVEGGAHEVSEEVMLTALEKAHEFIKIICDLQEQLRNACGKEKLPLVPLSVELENKQ 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFED 297
            + +E    + E L    ++  K+ R    D +K  +   ++ +     + ++  ++F+D
Sbjct: 243 AIHDEAYPRLSEAL----YVKGKFERRAACDAVKADIAEKYAEQLEDEVQTKLFNTLFDD 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  ++R  +LDK +R+DGR++E +R I+ ++G+L R HGS++F RG+TQ++ VVTLGT 
Sbjct: 299 MEYHILRENILDKGLRVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTV 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ  D + G +R +F++HYNF P + GEV RMG   RREIGHG LA R++ P++P   
Sbjct: 359 FDEQVYDDIEGDRRENFILHYNFPPFSVGEVGRMGT-GRREIGHGYLAHRSLSPMIPSRE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEI ES+GSSSMATVCG +L+L+ AGVP+  PVAGIAMGL+ DGD + ILS
Sbjct: 418 KFPYTVRVVSEILESNGSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYAILS 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G+EDHLG MDFKVAGT++GIT  QMD+KI G+S  IM  AL QAKRGR+HIL  M++
Sbjct: 478 DILGEEDHLGDMDFKVAGTENGITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQ 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S+    + ++ PR+E + I  D+I  +IG GGK I+ + EQ    +N D+DGTV I  
Sbjct: 538 TISKPNADISKYAPRIECVKIAVDKIGALIGPGGKNIKALSEQYQVTINTDNDGTVTIYG 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                   A+  +  + + PEV +IY+G V K+M+FGAFV     ++GL HIS+LS ERV
Sbjct: 598 KDSQSALDAKAAVIGVVEEPEVGRIYQGTVKKIMEFGAFVEILPGKEGLCHISKLSRERV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            K  DV+KE   + VKLL+ D   ++ LS
Sbjct: 658 GKVGDVLKEEQQIPVKLLEIDKMNRLNLS 686


>gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
 gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
          Length = 723

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 316/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   IDD+K++++  + ++    NE EI+S    +
Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIDDVKEEILESYKAKELE-NESEILSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|269120588|ref|YP_003308765.1| polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
           ATCC 33386]
 gi|268614466|gb|ACZ08834.1| Polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
           ATCC 33386]
          Length = 710

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 316/713 (44%), Positives = 466/713 (65%), Gaps = 35/713 (4%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  + E++   + +K+ +G+IARQ+ GAV+   G+TV+L T    + +++G DFFPLT
Sbjct: 1   MFNEKSYELKIGEKTVKISSGKIARQASGAVIVECGKTVLLVTATRSKEVREGTDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RESRP+ +E+LI+R+IDR IRPLF + +     ++I V+  
Sbjct: 61  VDYIEKFYASGKFPGGFIKRESRPSTDEVLIARLIDRPIRPLFPEGFFYGVHIVITVISF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D  + P  ++ +  SAAL +S +PF GPV G  V YI+G++VLNP  +E + S ++L V+
Sbjct: 121 DEVNLPENLATLGVSAALSISDIPFAGPVGGVNVGYIDGKFVLNPTPEELEISDIELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV MVE  AN++ ED++L+AI+FGH           K+ +MC ++   I   + +K
Sbjct: 181 GTADAVTMVEAGANEIPEDIMLEAIMFGH----------GKIKEMCEEQEKFISQFEVNK 230

Query: 240 LEEEMSQMIKEDLRVSCFIPEK--------------YVRCKQIDDLKKKMVSYFSSEHSS 285
           +E E++++  E   V  FI EK              + R   ID L  +++  FS+ + +
Sbjct: 231 MEFEVAEVNPE---VKSFIDEKATEELGAAIEKHGKHERDDAIDALFDRLLEEFSASYEN 287

Query: 286 WNE------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            NE       E  + + D+  K+VR  +L KK R DGR +E +R I  ++  L   HGS+
Sbjct: 288 -NEIPADIAKEFKNYYHDLMKKMVRESILYKKNRPDGRKTEEIRPIDVEIDTLPIPHGSA 346

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQA+V VTLG+R +EQ VD +    R  F +HYNF P + GE   M AP RRE+
Sbjct: 347 LFTRGETQALVTVTLGSRVNEQIVDGMEEESRKKFYLHYNFPPYSVGEAGFMRAPGRREL 406

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+  ++P+   FPYT+R+VSEITES+GSSS A++CG SLALM AGVP+   V
Sbjct: 407 GHGSLAERALKYMIPEQEDFPYTIRVVSEITESNGSSSQASICGGSLALMAAGVPMKSSV 466

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           AGIAMGL+K+ ++F++L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +
Sbjct: 467 AGIAMGLIKENEEFVVLTDIQGLEDHLGDMDFKVAGTKNGITALQMDIKITGITREIMEI 526

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA  GR+ IL++M+ V+ E R  + E  P++  M I P +I  +IG GGK I+ I++
Sbjct: 527 ALKQAHNGRMFILDKMNAVIPEPRKDVSENAPKIHFMKIDPSKIAILIGPGGKTIKSIID 586

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           QTGA ++I+DDG+V I     + ++   E+++S T   E+N +Y G+VVK+  FGAFV  
Sbjct: 587 QTGATIDIEDDGSVAIFVKEKSSLDKTIELVKSYTQSVELNAVYTGRVVKIAKFGAFVEV 646

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
              ++GL+HIS++  ERV K  DV+KEG  + VK++  +D  K  LSMK ++ 
Sbjct: 647 LPGKEGLLHISEIKKERVNKVEDVLKEGQIIKVKVIGMEDENKFNLSMKALEN 699


>gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Mississippi]
 gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Virginia]
          Length = 805

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 333/703 (47%), Positives = 469/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    + +V     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292
             K+  ++S    E   V+     K  R  Q+D  ++ + S    +H      + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++   D+  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701


>gi|261856059|ref|YP_003263342.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
           neapolitanus c2]
 gi|261836528|gb|ACX96295.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
           neapolitanus c2]
          Length = 698

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 332/690 (48%), Positives = 466/690 (67%), Gaps = 3/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T + ++    + L TG IARQ+ GAV+   G+TVVL TVV + + + GQDF PLTV Y
Sbjct: 5   VFTEQFDYGRHSVTLTTGEIARQASGAVMVQMGDTVVLVTVVVESAPEPGQDFLPLTVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LI+R+IDR +RPLF K + N+ QVI  V+  D E
Sbjct: 65  QEKFYAAGRIPGGFFKREGRSTEAETLIARLIDRPLRPLFPKGFYNQVQVIAQVLSLDPE 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL LSGLPF+  +  A+V YIN  +VLNP   E   S L+L V+GT+
Sbjct: 125 VPGDIPAMLGASAALALSGLPFDAHLGAARVGYINEAFVLNPAQTEMADSRLELVVAGTE 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           +AVLMVE EA++L E  +LDA++FGH   +  I AI +LA   A+  +      +   LE
Sbjct: 185 EAVLMVESEADRLPEATMLDAVMFGHEAAQSAIAAIRRLAANAARPAMAWAPPVEHPDLE 244

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++     + +  +  I EK  R  ++++L+++ ++ F+ + +   +  + S+ E +++ 
Sbjct: 245 AKIRTAFGDSIAETYQIAEKQQRYLRLNELREEAIAQFADDVAVPAK-LVSSLIESLESS 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +LD   R+DGRD++T+R I+ + G+L R HGS+LF RG+TQA+VV TLG+  D Q
Sbjct: 304 VVRGRVLDGAARIDGRDTKTIRPITVRTGVLPRVHGSALFTRGETQALVVTTLGSARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D++ G  +  F+ HYNF P + GE  R GAP RREIGHG LARR +  V+P     PY
Sbjct: 364 LIDAVVGEYKESFIFHYNFPPYSVGETGRFGAPKRREIGHGNLARRGVKAVIPNPENSPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           TLR+VSEITES+GSSSMA+VCG+SL++MDAGV I+ PVAGIAMGL+K+G+ F++LSDI G
Sbjct: 424 TLRVVSEITESNGSSSMASVCGASLSMMDAGVEIAAPVAGIAMGLIKEGNRFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM  AL QAK GRLHIL  M+  L+ 
Sbjct: 484 DEDHLGDMDFKVAGTADGVTALQMDIKINGITREIMSQALDQAKGGRLHILGIMNAALAA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  +    P+     I PD+IR VIG GG  I+GI   T  +++I DDG + I ++S  
Sbjct: 544 PRKSVAPNAPQFIKFKINPDKIREVIGKGGATIQGITRDTHTQIDISDDGQITITATSAE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + E AR  +  IT   EV KIY+G+VV++ DFGAFV+    +DGL+HISQ+S ERV + +
Sbjct: 604 QGEEARRRVEQITVEAEVGKIYEGKVVRITDFGAFVNILPGKDGLLHISQISDERVERVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           D ++EGD V V LL+ D +G+++L+M+ +D
Sbjct: 664 DKLQEGDNVRVLLLELDKQGRMRLTMRGLD 693


>gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           1816]
          Length = 728

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+D+K++++  + ++    NE EI+S    +
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEILSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
 gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
          Length = 699

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 311/687 (45%), Positives = 456/687 (66%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G YV+NP + E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVAEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E K ++    ++       K+  +   +D + +E+  + 
Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPEKQEFIPVERDEALVEKVQAL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D LK+++V++F  E    NE    E+ ++  D+  + V
Sbjct: 250 TEEKGLKDTVLTFDKQQRDENLDALKEEVVAHFIDEEDPENEALINEVYAILNDLVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + +   R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIGHPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +   A I
Sbjct: 550 KELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER+ K  DV
Sbjct: 610 NRAKEIIEDITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISKERINKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  GD++ VK+ + D +G++  S K +
Sbjct: 670 LNIGDSIEVKITEIDKQGRVNASHKTL 696


>gi|29377522|ref|NP_816676.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           V583]
 gi|227554487|ref|ZP_03984534.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           HH22]
 gi|257088180|ref|ZP_05582541.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           D6]
 gi|75541451|sp|Q82ZJ2|PNP_ENTFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29344989|gb|AAO82746.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           V583]
 gi|227176397|gb|EEI57369.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           HH22]
 gi|256996210|gb|EEU83512.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           D6]
 gi|315027681|gb|EFT39613.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2137]
 gi|315573355|gb|EFU85546.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0309B]
 gi|315581213|gb|EFU93404.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0309A]
          Length = 704

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + S   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFSEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|227517327|ref|ZP_03947376.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX0104]
 gi|256960415|ref|ZP_05564586.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Merz96]
 gi|257417198|ref|ZP_05594192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           AR01/DG]
 gi|257420479|ref|ZP_05597469.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           X98]
 gi|293383916|ref|ZP_06629818.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           R712]
 gi|293388310|ref|ZP_06632824.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           S613]
 gi|300861666|ref|ZP_07107750.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|307286415|ref|ZP_07566521.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0109]
 gi|312906743|ref|ZP_07765743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|312910719|ref|ZP_07769558.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|227075197|gb|EEI13160.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX0104]
 gi|256950911|gb|EEU67543.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Merz96]
 gi|257159026|gb|EEU88986.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ARO1/DG]
 gi|257162303|gb|EEU92263.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           X98]
 gi|291078743|gb|EFE16107.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           R712]
 gi|291082320|gb|EFE19283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           S613]
 gi|295114393|emb|CBL33030.1| polyribonucleotide nucleotidyltransferase [Enterococcus sp. 7L76]
 gi|300849127|gb|EFK76880.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|306502428|gb|EFM71701.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0109]
 gi|310627391|gb|EFQ10674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|311288982|gb|EFQ67538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|315143300|gb|EFT87316.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2141]
 gi|315148895|gb|EFT92911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4244]
 gi|315154770|gb|EFT98786.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0043]
 gi|315164498|gb|EFU08515.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1302]
          Length = 704

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           10403S]
          Length = 723

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+D+K++++  + ++    NE EI+S    +
Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEILSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459]
 gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 723

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+D+K++++  + ++    NE EI+S    +
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEILSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 723

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+D+K++++  + ++    NE E++S    +
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILEGYKTKELE-NEAEVLSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|255974311|ref|ZP_05424897.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T2]
 gi|255967183|gb|EET97805.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T2]
          Length = 704

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++EI+ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEIIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           N1-067]
          Length = 723

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+D+K++++  + ++    NE E++S    +
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEVLSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
          Length = 723

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/702 (44%), Positives = 455/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++ SY + E  +  E  GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 762

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 308/684 (45%), Positives = 449/684 (65%), Gaps = 8/684 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E AGRPL +E G++A+Q++G+ L  YG+TV+LAT    +  + G DFFPL V+++ER YA
Sbjct: 20  ELAGRPLVVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE +P+E  IL  R+ DR +RPLF K Y+N+ Q+I+  + +D + SP + 
Sbjct: 80  AGRIPGSFFRREGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIA 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
            ++ AS AL +S +P+ GPV   +V  ++G+ V+NP   + + S LDL V+GT+DA+ MV
Sbjct: 140 GIIGASVALGISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSRLDLTVAGTRDAINMV 199

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSKLEEEMS 245
           E  A+++ E  +LDAI  GH E + ++E    +   C K   EP++ +      +   + 
Sbjct: 200 EAGAHEVPEATILDAIFRGHEEIRRLVEFQEAIIAQCGKPKAEPVLYEPD--PNVAVAVR 257

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               E LR +   P+K  R + +D++KK  +    +E     E +I  V +D+  ++VR 
Sbjct: 258 ARYTERLRAAINHPDKQAREQAVDEVKKTALEELLAEFPE-AELDIKHVLDDVLKEIVRR 316

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +LD+ +R DGR    +R I  +VGLL R HGS LF RG TQ + V +LG   D Q +D+
Sbjct: 317 QILDEGIRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDT 376

Query: 366 LSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           L   +    +M HYNF P +TGEV+ + APSRREIGHG LA RA+ PVLP    FPYT+R
Sbjct: 377 LGQIEEFKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELDFPYTIR 436

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+  S+GS+SMA+ CGS+LALMDAGVPI  PVAG+AMGL+K+GD F +L+DI G ED
Sbjct: 437 LVSEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQGIED 496

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  G+TA+QMD+KI G+   ++  AL+QA+ GRL IL +M  V+ + R 
Sbjct: 497 HLGDMDFKVAGTREGVTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKMLAVIDKPRP 556

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + PR+ IM IP ++IR VIG GG+++  I ++ G K++I+DDG V IA+ +    +
Sbjct: 557 ELSPYAPRIIIMQIPVEKIREVIGPGGRMVNRIADECGVKIDIEDDGKVYIAAQTQQGGQ 616

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E I  I    EV  +Y G+V ++M FGAFV     ++GLVH+S+L+ +RV K  D+V
Sbjct: 617 KAKEWIEQIVADVEVGSVYLGKVTRLMTFGAFVEILPGKEGLVHVSRLAPQRVPKVEDMV 676

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           + GDTV VK+++ DD G++ LS K
Sbjct: 677 RPGDTVLVKVVEIDDLGRVNLSRK 700


>gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS]
 gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS]
          Length = 733

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 325/701 (46%), Positives = 461/701 (65%), Gaps = 24/701 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           G+ + +ETG++A+Q+DG+ + T  +T+VLATVV  ++     QDFFPL V Y+E+  A G
Sbjct: 12  GKVITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFPLQVEYREKYSAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+II+V+  D  +   V+  
Sbjct: 72  KFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDTINDADVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           +AASAA+M+S +PF  P+   +V  ING +++NP ++E  Q  +D+ + GT+D + M+E 
Sbjct: 132 IAASAAIMVSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDMDICIGGTEDTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMS 245
           E  ++SE  +LDAI FGH+  K +     +LA   AK      P V   +  + +EE  S
Sbjct: 192 EMKEISEAEMLDAIKFGHDAIKKICALQRELAAEVAKPKRPFSPTVAPDELVNFVEEHCS 251

Query: 246 QMIKEDLRVSCFIPEKYVRCKQI-DDLKKKMVSYFS------------SEHSSWNEGEIV 292
             +K          E+  + K I     +K +++F+            +     NE  I 
Sbjct: 252 AELKALAYTPLAKEERAEKTKAIYTQTIRKTLTHFTDRVGPDQIEADPTSAFCLNEHMIE 311

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
                ++ KV+R ++LD   R+DGR  E VR IS ++GL+ R HGS+LF RG+TQA+V +
Sbjct: 312 ECIHAVEKKVMRHMILDDGKRLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTL 371

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT++D Q VD+L+  +   FM+HYNF P + GE+ R+G   RREIGHG LA RAI  V
Sbjct: 372 TLGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGEIGRVGGAGRREIGHGNLAERAIKMV 431

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P   +FPYT+R+VS+I ES+GSSSMA+VCG +LA MD G+P+ KPV+GIAMGL+K+GD 
Sbjct: 432 MPSEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDR 491

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  AL+QA++GRLHIL
Sbjct: 492 YAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILETALEQARKGRLHIL 551

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M++ + ESR  +G++ PR+  + IP D I  VIG GG+ IR I E+TGA++NIDDDGT
Sbjct: 552 DVMAEAIPESRADIGKYAPRLTTIQIPVDAIGMVIGKGGETIRSITEETGAEINIDDDGT 611

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLVHISQ 651
           V IA SS    +AA E I+++   PEV  IY G+V  + D  GAFV F    DGLVHIS+
Sbjct: 612 VTIACSSPEATKAAVETIKTLVSKPEVGTIYMGKVRDIRDELGAFVEFLPKTDGLVHISE 671

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689
           ++ ER+AK SDV+K GD + VKL+D   D R GK K ++ +
Sbjct: 672 IARERIAKVSDVLKVGDRIKVKLIDVRKDPRTGKTKFALSI 712


>gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
           3523]
          Length = 693

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 317/685 (46%), Positives = 467/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGADFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  + G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVIAGVRVGYTNGKYILNPNKQDLKDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNVIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GI+E+TGA+++  D G VK+ +     
Sbjct: 548 KKAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIIEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D GAFV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVTMIEEIVAEVEEGQVYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU121]
          Length = 699

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 314/695 (45%), Positives = 461/695 (66%), Gaps = 17/695 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF GP+ G  V Y++G+YV+NP + E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFLGPIAGVNVGYVDGKYVINPTVAEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQ 246
           E  A++++E  +L+AI FGH+E K ++    ++      E      ++F  +E  EE+ +
Sbjct: 190 EAGASEITESEMLEAIFFGHDEIKRLVAFQQEIIDYIQPE-----KQEFIPVERDEELVE 244

Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDI 298
            +K     + L+ +    +K  R   +D LK+ +V+ F  E    NE    E+ ++  D+
Sbjct: 245 KVKSLTEAKGLKDTVLTFDKQQRDINLDALKEDIVAEFIDEEDPDNEALIKEVYAILNDL 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   
Sbjct: 305 VKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALG 364

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T+ 
Sbjct: 365 DYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTSD 424

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+D
Sbjct: 425 FPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTD 484

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + 
Sbjct: 485 IQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQT 544

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P+V  M I P++IR+VIG GGK I  I+++TG K++I+ DG + I + 
Sbjct: 545 IDQPRNELSAYAPKVVTMNIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGQIFIGAV 604

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+ ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+STER+ 
Sbjct: 605 DQEMIDRAREIIEEITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISTERIN 664

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  DV+K GD++ VK+ + D +G++  S K +++ 
Sbjct: 665 KVEDVLKLGDSIEVKVTEIDKQGRVNASHKAINEK 699


>gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 723

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 316/702 (45%), Positives = 454/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295
           +LE E+    +  ++V+    EK  R   I+++K++++ SY + E  +  E   E+  + 
Sbjct: 240 ELEAEVKAASEGKMKVAIKTEEKKAREAAIEEVKEEILESYKAKELENETEILSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701


>gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
 gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
          Length = 704

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 309/687 (44%), Positives = 453/687 (65%), Gaps = 6/687 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGRPL +E G++A+Q++GA L  YG+T VLAT    +S K   DFFPLTVNY+ER YA
Sbjct: 10  EWAGRPLVIEVGQLAKQANGAALVRYGDTSVLATATMSKSPKP-LDFFPLTVNYEERLYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE RP+E  IL SR+IDR IRP+F   ++NE QVI  VM +D + +  + 
Sbjct: 69  AGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDPDCTSEMA 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +MV +S AL +S +PF+GP+ G QV YI+G++++NP +++ ++ ++ L V+G +DA+ MV
Sbjct: 129 AMVGSSLALAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNRSTIHLSVAGNKDAINMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEMSQ 246
           E  A ++ E+++L+AI+FGH E K +I    ++     KE  P+ +   D   ++ ++  
Sbjct: 189 EAGALEVPEEIMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKLPVTLFEID-EAIQADIKA 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
             + D+  +    EK+ R + I  +K++++ SY   E       ++ ++ + +  + VR 
Sbjct: 248 ACETDMHDAIQTAEKHARDEAIQAVKERVIASYEEQEADDETMKQVYTILDKMVKEEVRR 307

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            + + K+R DGR  + +R +S++ GLLQRTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 308 QITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDG 367

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P  + FPYT+R 
Sbjct: 368 LGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDESIFPYTIRC 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GS+S A++C S+LA+MDAGVP+  PVAGIAMGL+K G+ + IL+DI G EDH
Sbjct: 428 VSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILTDIQGMEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S NI+  AL QAK GR+HIL  M   L E R Q
Sbjct: 488 LGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLATLPEPRKQ 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P++ I+ I PD+IR+VIG GGK I  I+E+TG K++ + DGT+ I+S+  A    
Sbjct: 548 LSAFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISSADEAMNAR 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  I    +V + Y   V ++  FGAF      +DGL+HIS++  ER  +  DV+K
Sbjct: 608 AKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKQVEDVLK 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            GD + VK+++ D +G++ LS KVV Q
Sbjct: 668 LGDQLLVKVIEIDKQGRVNLSRKVVIQ 694


>gi|328676680|gb|AEB27550.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
           Fx1]
          Length = 693

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKARIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|56707819|ref|YP_169715.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670290|ref|YP_666847.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|224456890|ref|ZP_03665363.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370315|ref|ZP_04986320.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874633|ref|ZP_05247343.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81597693|sp|Q5NGX7|PNP_FRATT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123169466|sp|Q14IC9|PNP_FRAT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56604311|emb|CAG45332.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320623|emb|CAL08715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568558|gb|EDN34212.1| hypothetical protein FTBG_00070 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840632|gb|EET19068.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158995|gb|ADA78386.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 693

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARAGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|118497208|ref|YP_898258.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. novicida U112]
 gi|194323507|ref|ZP_03057284.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           novicida FTE]
 gi|254372573|ref|ZP_04988062.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|254374032|ref|ZP_04989514.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3548]
 gi|187610266|sp|A0Q5I9|PNP_FRATN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118423114|gb|ABK89504.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           U112]
 gi|151570300|gb|EDN35954.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3549]
 gi|151571752|gb|EDN37406.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3548]
 gi|194322362|gb|EDX19843.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           novicida FTE]
          Length = 693

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|288556936|ref|YP_003428871.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
           OF4]
 gi|288548096|gb|ADC51979.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
           OF4]
          Length = 704

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 313/684 (45%), Positives = 454/684 (66%), Gaps = 4/684 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+WAGR L +ETG+ A+Q++GAVL  YG+T VL+TV   +  K+  +FFPLTVNY+ER Y
Sbjct: 10  IDWAGRELTVETGQFAKQANGAVLVRYGDTAVLSTVTASKEPKN-LNFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE RP+E  IL SR+IDR IRPLF   ++NE QVI  VM  D   S  +
Sbjct: 69  AAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSVDQNCSSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL +S +PF+GP+ G  V   +G+ ++NP  ++ ++  +DL V+GT+DA+ M
Sbjct: 129 AAMIGSSLALSISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESDIDLVVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+++ E+ +L+AI++GH+E K ++    ++ +   KE   I  K   ++LE  +  
Sbjct: 189 VEAGADEVPEETMLEAIMYGHDEIKRLVAFQEEVVQAAGKEKKEIQLKQVDAELESAVRN 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + + DL+ +  + EK+ R   ID + K ++  +  E      G++  V + +  + VR +
Sbjct: 249 LAEADLKKAVQVQEKHERQAAIDAVMKPIIEKYEEEQEELV-GDVREVLQKVVKEEVRRL 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  +KVR DGR  + +R +++QV LL RTHGS LF RG TQA+ + TLG   D Q +D L
Sbjct: 308 ITVEKVRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +   FM HYNF   + GE   +  P RREIGHG L  RA+ P++P    FPYT+R+V
Sbjct: 368 GIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPIIPSENDFPYTIRLV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK  +   +L+DI G ED L
Sbjct: 428 SEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHLTVLTDIQGMEDAL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  G+TA+QMD+KI GI+  ++  AL+QAKRGR+ IL+ M   +SESR +L
Sbjct: 488 GDMDFKVAGTKEGVTALQMDIKISGINREVLEQALEQAKRGRMVILDNMLSAISESRSEL 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            E+ P++  M + PD+IR+VIG  GK+I  I+E+TG K++I+ DGTV I+S      E A
Sbjct: 548 SEYAPKIMTMHVNPDKIRDVIGPSGKMINKIIEETGVKIDIEQDGTVYISSVDSKMNEQA 607

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R++I  I    EV + Y G+V +V  FGAFV     +DGLVHISQL+ ER+ K  DVV  
Sbjct: 608 RKIIEDIVREVEVGQTYLGKVKRVEKFGAFVELFKGKDGLVHISQLAEERINKVEDVVSI 667

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           GD + V++ + D++G++ LS KV+
Sbjct: 668 GDEILVRVTEIDNQGRVNLSRKVI 691


>gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           S4-171]
          Length = 723

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+D+K++++  + ++    NE E++S    +
Sbjct: 240 ELEVEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEVLSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J1-175]
 gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           L99]
 gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. Scott A]
          Length = 723

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/702 (44%), Positives = 455/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++ SY + E  +  E  GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|229547506|ref|ZP_04436231.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX1322]
 gi|229548082|ref|ZP_04436807.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           ATCC 29200]
 gi|255970737|ref|ZP_05421323.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T1]
 gi|256618176|ref|ZP_05475022.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ATCC 4200]
 gi|256761105|ref|ZP_05501685.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T3]
 gi|256854742|ref|ZP_05560106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T8]
 gi|256958346|ref|ZP_05562517.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DS5]
 gi|256962906|ref|ZP_05567077.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           HIP11704]
 gi|257078344|ref|ZP_05572705.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           JH1]
 gi|257091307|ref|ZP_05585668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           CH188]
 gi|294780196|ref|ZP_06745568.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           PC1.1]
 gi|307270429|ref|ZP_07551730.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4248]
 gi|307273930|ref|ZP_07555142.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0855]
 gi|307276709|ref|ZP_07557826.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2134]
 gi|312905366|ref|ZP_07764481.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0635]
 gi|312953165|ref|ZP_07772012.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0102]
 gi|229306768|gb|EEN72764.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           ATCC 29200]
 gi|229307348|gb|EEN73335.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX1322]
 gi|255961755|gb|EET94231.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T1]
 gi|256597703|gb|EEU16879.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ATCC 4200]
 gi|256682356|gb|EEU22051.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T3]
 gi|256710302|gb|EEU25346.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T8]
 gi|256948842|gb|EEU65474.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DS5]
 gi|256953402|gb|EEU70034.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           HIP11704]
 gi|256986374|gb|EEU73676.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           JH1]
 gi|257000119|gb|EEU86639.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           CH188]
 gi|294452739|gb|EFG21169.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           PC1.1]
 gi|306506608|gb|EFM75761.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2134]
 gi|306509409|gb|EFM78467.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0855]
 gi|306513207|gb|EFM81838.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4248]
 gi|310628908|gb|EFQ12191.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0102]
 gi|310631390|gb|EFQ14673.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0635]
 gi|315031249|gb|EFT43181.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0017]
 gi|315036532|gb|EFT48464.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0027]
 gi|315152914|gb|EFT96930.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0031]
 gi|315157487|gb|EFU01504.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0312]
 gi|315162544|gb|EFU06561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0645]
 gi|315167175|gb|EFU11192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1341]
 gi|315171031|gb|EFU15048.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1342]
 gi|315173459|gb|EFU17476.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1346]
 gi|315578552|gb|EFU90743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0630]
 gi|323478998|gb|ADX78437.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           62]
 gi|327536187|gb|AEA95021.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           OG1RF]
 gi|329571128|gb|EGG52834.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1467]
          Length = 704

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
          Length = 708

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 311/691 (45%), Positives = 468/691 (67%), Gaps = 16/691 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E  GR L LETG++A+Q++G+VL  YGETV+L T   D     G D+FPL +NY+ER Y
Sbjct: 8   MELGGRELTLETGKLAQQANGSVLVRYGETVILVTATMDDPR--GMDYFPLMINYEERLY 65

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+++RE RP+E   L SR+IDR +RPLF +  +++ QVI  V+  D ++SP V
Sbjct: 66  SVGKIPGGFIKREGRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSPEV 125

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ ASAAL +S +PFEGP+ G  V  ++G+ +LNP ++E ++ SLDL V+G +D V+M
Sbjct: 126 AAMIGASAALSISDIPFEGPIGGVNVGLVDGELILNPTVEEQEESSLDLIVAGNKDGVMM 185

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           VE  AN+++ED +++AI +GH + + +I    E ++K+ K  A   +V  + +  ++E  
Sbjct: 186 VESAANEVTEDKMIEAIDYGHQKLQGIIKLQEEMVAKIGKEEADLELV--TVEDPEVEAA 243

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE------IVSVFED 297
           + +   EDL+ +    +K  R + +D +K+++  +F+ E +  +EG       + S  + 
Sbjct: 244 VREYAGEDLKEALLTKDKAERGENLDQVKEEVKEHFTDEFAD-DEGTEEKMKVVSSTLDK 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  + +R+++LD+  R+DGRD + VR I  +V +L R HGS +F RG TQ + V TLG  
Sbjct: 303 ITKETIRSLVLDEGKRVDGRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVMTVATLGAV 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D +   +   +M HYNF   + GE   +  P RREIGHG L  RA+ P++P+  
Sbjct: 363 GDEQRLDGIEVKESKRYMHHYNFPSFSVGETGPIRGPGRREIGHGALGERALRPMIPEHD 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSE+ ES+GS+S A++CGS+L+LMDAGVPI KPVAGIAMGL+K GD   +LS
Sbjct: 423 DFPYTIRLVSEVLESNGSTSQASICGSTLSLMDAGVPIRKPVAGIAMGLMKKGDKVEVLS 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAG++ GITA+QMD+KI GIS++I+  AL+QA++GRLHIL++M +
Sbjct: 483 DIQGIEDFNGDMDFKVAGSEDGITALQMDVKIKGISKDILAEALEQARQGRLHILDKMLE 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ ESR +L  + P +  M I P++IR+VIG GGK I+ I+++TG  V+I+DDGTV IA+
Sbjct: 543 VMPESRDELSPYAPSIITMEIDPEKIRDVIGPGGKTIKKIIDETGVNVDIEDDGTVFIAA 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 + A++M+  +T+  EV +IY G+V +V  FGAFV     ++GLVHIS+L+   V
Sbjct: 603 DDQESGKQAQQMVAKMTEDVEVGEIYLGEVKRVTHFGAFVEILPGKEGLVHISELADYHV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +  D++  GD + VKL + DD+ ++ LS K
Sbjct: 663 DEVEDLLTVGDEILVKLTEIDDKDRLNLSRK 693


>gi|315028235|gb|EFT40167.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4000]
          Length = 704

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICSGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|208779001|ref|ZP_03246347.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
 gi|208744801|gb|EDZ91099.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
          Length = 693

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYAEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|89256821|ref|YP_514183.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica LVS]
 gi|156502987|ref|YP_001429052.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009860|ref|ZP_02274791.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368103|ref|ZP_04984123.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290953517|ref|ZP_06558138.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313209|ref|ZP_06803868.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122500400|sp|Q2A269|PNP_FRATH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610265|sp|A7NDP3|PNP_FRATF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89144652|emb|CAJ79976.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|134253913|gb|EBA53007.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156253590|gb|ABU62096.1| putative polyribonucleotide nucleotidyltransferase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 693

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTYDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNTYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
 gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
          Length = 705

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 310/685 (45%), Positives = 452/685 (65%), Gaps = 6/685 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++WAGR L++E G++A+Q++GA L  YG+T VL+T    ++ K   DFFPLTVNY+ER Y
Sbjct: 10  LDWAGRELQVEVGQLAKQANGAALIRYGDTAVLSTATASKTPKP-LDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E   L SR+IDR IRPLF   ++NE QVI  VM  D +    +
Sbjct: 69  AVGKIPGGFIKREGRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQDCPSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  +S ALM+S +PF GP+ G  V  I+GQY++NP  D+ +Q S++L V+GT+DA+ M
Sbjct: 129 AAMFGSSLALMISDIPFGGPIAGVIVGLIDGQYIINPTNDQLEQSSINLIVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A ++SE+V+L+AI+FGH E K +I    ++A+   K    I   +  ++L   +  
Sbjct: 189 VEAGAKEVSEEVILEAIMFGHEEIKKLIAFQEQIAEEVGKAKSDIQLYELDAELTSSLKD 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKK-MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            ++ DL  +  I EK  R + ID++K + M +Y  S+ +   +     + + +    VR 
Sbjct: 249 AVEADLNAAVQINEKQARNEAIDEVKARAMAAYEESDDAVKKQAG--QILDKMVKDEVRR 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+K+R DGR    +R +S++VG+L RTHGS LF RG TQA+ + TLG   D Q +D 
Sbjct: 307 LITDEKIRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDG 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       FM HYNF   + GE   +  P RREIGHG L  RA+  V+P    FPYT+R+
Sbjct: 367 LGIEDTKRFMHHYNFPLFSVGETGFLRGPGRREIGHGALGERALEAVIPNEKDFPYTIRL 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           V+E+ ES+GS+S A++C S+LA+MDAGVP++ PVAGIAMGLVK GD++ +LSDI G EDH
Sbjct: 427 VAEVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLVKKGDNYTVLSDIQGMEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GITA+QMD+KI G+S  I+  AL QA+ GR+HIL  M   ++E R  
Sbjct: 487 LGDMDFKVAGTAKGITALQMDIKIDGLSREILEEALTQAQIGRIHILESMLATIAEPRTT 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ P++ ++ I PD+IR+VIG GGKVI  I+++TG K++ + DGT+ I+S        
Sbjct: 547 LSKYAPKIIMVKINPDKIRDVIGPGGKVINKIIDETGVKIDTEQDGTIFISSVDEEMNAK 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+ MI +I    +V + Y+G+V ++  FGAFV     +DGL+HIS++  ER  +  DV+K
Sbjct: 607 AKAMIENIVREAKVGEYYEGKVKRIEKFGAFVELFPGKDGLLHISEIQEERTKEVEDVLK 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
               + VK+++ D +G++ LS KVV
Sbjct: 667 MDQIIQVKVIEIDRQGRVNLSRKVV 691


>gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
          Length = 715

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 317/692 (45%), Positives = 459/692 (66%), Gaps = 8/692 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T + E AGR L LE G++A+Q+ G+VL  YG+T +L+ V   +  K   DFFPLTVNY+E
Sbjct: 7   TYDFELAGRKLTLEFGKMAKQAHGSVLVRYGDTAILSAVTVSKEPKP-LDFFPLTVNYEE 65

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVGKIPGG+++RE RP+E  IL SR+IDR +RPLF++ ++N+ Q++  V+  D + S
Sbjct: 66  RLYAVGKIPGGFIKREGRPSEKAILASRLIDRPVRPLFAEGFRNDVQIVNTVLSVDQDCS 125

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +M+  SAAL +S +PFEGP+ G  V  I+G++V+NP + + + S + L V+GT  A
Sbjct: 126 PEIAAMIGTSAALCVSEIPFEGPIAGVIVGRIDGEFVINPTVAQAEKSDIHLTVAGTHKA 185

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243
           + MVE  ANQ+ E ++L+AI+ GH+  K ++E  + +     K+ + VI  +   ++++ 
Sbjct: 186 INMVEAAANQVPEAIMLEAIMAGHDVIKQLVEFQNMIVSEIGKQKMEVILHEVDPEIDQA 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGE--IVSVFEDIQA 300
           +    +  L+ +  I EK  R   IDD+K +   +F+++ + ++ E E  I  V  +I  
Sbjct: 246 VRAYAEARLKEAVRIEEKQARYDAIDDIKAETKEHFAAKDAEAYPEQEKMISEVLGNIVK 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ D+KVR DGR    +R +S++  +L RTHGS++F RG TQA+ V TLG   D 
Sbjct: 306 DEVRRLITDEKVRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDV 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L   +   FM HYNF P + GE   +  P RREIGHG L  RAI P++P   +FP
Sbjct: 366 QILDGLGLEESKRFMHHYNFPPYSVGEARPLRPPGRREIGHGALGERAIEPIIPSEVEFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSD 478
           YT+R+VSE+ ES+GS+S A++C S LALMDAGVPI  PVAGIAMGL+  KD   F IL+D
Sbjct: 426 YTIRLVSEVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKDEKSFSILTD 485

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT++G+TA+QMD+KI GI+  I+ +AL+QA+ GRLHILN M   
Sbjct: 486 IQGMEDHLGDMDFKVAGTEAGVTAIQMDIKISGINREILELALEQARVGRLHILNHMMST 545

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R +L  + P++  M I P++IR+VIG  G+VI  I+E+TG K++I+ DG V IAS 
Sbjct: 546 ISEPRKELSPYAPKIMTMTINPEKIRDVIGPQGRVINKIIEETGVKIDIEQDGRVFIASI 605

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +      A+++I  +     V ++Y G V +V  +GAF+     ++GL HISQL+ ERVA
Sbjct: 606 NHEANLRAKQIIEDLVREVAVGQVYLGTVKRVEKYGAFIELFAGKEGLCHISQLAEERVA 665

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           KT DVV  GD V VK+ + DD+G++ LS K V
Sbjct: 666 KTEDVVAVGDKVQVKVTEIDDQGRVNLSRKAV 697


>gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName:
           Full=Polynucleotide phosphorylase 2; Short=PNPase 2
 gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 312/691 (45%), Positives = 445/691 (64%), Gaps = 7/691 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T E+E  GRP  +E G++A  + G+ +  YG+T VL T    +  K+G DFFPL+ +Y
Sbjct: 2   IRTFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RESRP+E   L +R+IDR IRPLF K Y N+ QVI  V+  D +
Sbjct: 62  EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
             P + +M+ +S AL +S +PF GP     V  I+G+Y++NP  ++ + S L+L VSGT+
Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSELELIVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKL 240
           DAV+M+E  AN+L+E  +LDAI+F H E K ++  I  +     K    +++   D S+L
Sbjct: 182 DAVMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETD-SEL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             E+   +   L  +    +K  R + I  +  + + YF  ++   ++ E+ ++    Q 
Sbjct: 241 LAEVVSFLDTKLANAIKTVDKTERNENIKAISAEALDYFEEKYEGRSK-EVNTILSK-QI 298

Query: 301 KV-VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           KV  R ++  + +R D R  + +R IS++VG+L RTHG+ LF RG+TQ + V TLG   D
Sbjct: 299 KVETRKMITSEGIRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L       +M HYNF P + GE   M  PSRREIGHG L  RA+ P++P    F
Sbjct: 359 AQRIDGLGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSE+   +GSSS A+VCGS+L+LMDAGVPI   VAGIAMGL+K+     ILSDI
Sbjct: 419 PYAIRLVSEVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MD KVAGT++GITA+QMD+KI GI  NIM  AL QAK GR HILN+M + +
Sbjct: 479 QGMEDALGDMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAI 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L  + P+V  + + PD++R VIG GGKVI  I+++TG K+NI++DGT+ IA+  
Sbjct: 539 TSPRTELSAYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVKINIENDGTIYIAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A EMI  I   P V ++Y G+V+K+MDFGAFV     ++GLVHIS L+ ERVAK
Sbjct: 599 QESARVALEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVAK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +DV+ EGD + VKL++ + +GKI LS K +
Sbjct: 659 VADVLAEGDLIEVKLMEINPQGKIGLSRKAL 689


>gi|315149071|gb|EFT93087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0012]
          Length = 704

 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  I+G+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQVIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1
 gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 312/691 (45%), Positives = 445/691 (64%), Gaps = 7/691 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T E+E  GRP  +E G++A  + G+ +  YG+T VL T    +  K+G DFFPL+ +Y
Sbjct: 2   IRTFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RESRP+E   L +R+IDR IRPLF K Y N+ QVI  V+  D +
Sbjct: 62  EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
             P + +M+ +S AL +S +PF GP     V  I+G+Y++NP  ++ + S L+L VSGT+
Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGEYIVNPTSEQKELSELELIVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKL 240
           DAV+M+E  AN+L+E  +LDAI+F H E K ++  I  +     K    +++   D S+L
Sbjct: 182 DAVMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETD-SEL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             E+   +   L  +    +K  R + I  +  + + YF  ++   ++ E+ ++    Q 
Sbjct: 241 LAEVVSFLDTKLANAIKTVDKTERNENIKAISAEALDYFEEKYEGRSK-EVNTILSK-QI 298

Query: 301 KV-VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           KV  R ++  + +R D R  + +R IS++VG+L RTHG+ LF RG+TQ + V TLG   D
Sbjct: 299 KVETRKMITSEGIRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L       +M HYNF P + GE   M  PSRREIGHG L  RA+ P++P    F
Sbjct: 359 AQRIDGLGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSE+   +GSSS A+VCGS+L+LMDAGVPI   VAGIAMGL+K+     ILSDI
Sbjct: 419 PYAIRLVSEVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MD KVAGT++GITA+QMD+KI GI  NIM  AL QAK GR HILN+M + +
Sbjct: 479 QGMEDALGDMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAI 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L  + P+V  + + PD++R VIG GGKVI  I+++TG K+NI++DGT+ IA+  
Sbjct: 539 TSPRTELSAYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVKINIENDGTIYIAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A EMI  I   P V ++Y G+V+K+MDFGAFV     ++GLVHIS L+ ERVAK
Sbjct: 599 QESARVALEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVAK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +DV+ EGD + VKL++ + +GKI LS K +
Sbjct: 659 VADVLAEGDLIEVKLMEINPQGKIGLSRKAL 689


>gi|257083264|ref|ZP_05577625.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Fly1]
 gi|257417915|ref|ZP_05594909.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T11]
 gi|256991294|gb|EEU78596.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Fly1]
 gi|257159743|gb|EEU89703.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T11]
          Length = 704

 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  I+G+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
 gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
          Length = 723

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 314/703 (44%), Positives = 454/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+D+K++++  + ++    NE E++S    +
Sbjct: 240 ELEAEVKVASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELE-NEAEVLSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS        A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQTMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
          Length = 758

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 323/699 (46%), Positives = 457/699 (65%), Gaps = 8/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    I+W GR L LETG+IARQ+DG+V+  YG+T +L TVV  +  ++  DF PL 
Sbjct: 1   MFEIIKKSIDWEGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178
           D  +SP V +++   AAL +SG+PF   + G  V    N  Y+LNP + E + S LDLF+
Sbjct: 120 DTVNSPEVPALIGTVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASNLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ VL+AI FGH   +PVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVLNAIKFGHEHLQPVIKLIKEFADTVGNKPESFAPVDIS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  ++D   +     K  R + ++ ++  +++    + +  +E  I    +  
Sbjct: 240 DITQELEKY-RKDFEEAYSKTVKQERVQALEVVRNNILNTL--KEAGKDEKLITYAVKSF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+D R  + +R I  +  +L +THGS+LF RG TQA+VV  LGT +
Sbjct: 297 ERSLVREMIRRKSVRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF P A GE S + AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPPFAVGEASAIRAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+S+ALMD GVPI  PVAGIAMGL+KD ++ IILSD
Sbjct: 417 FPYTIRVVSEIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKDKNEHIILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  GITA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R  + +  PRV    I  D+I   IG  GK IR + E++ AK+ I DDG V + + 
Sbjct: 537 ISEHRKDIKDHVPRVLSFYIDKDKISAAIGTKGKNIRSVCERSNAKIEIGDDGKVSVFAI 596

Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  E EAA+  MI SIT++ E   I   +VVK+      +     R G +HIS+++ + V
Sbjct: 597 SSTEAEAAKNMMIDSITEL-EQGSIIDAKVVKIEKSIVELELLNGRKGKMHISEVANQHV 655

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
               D++K+GDT    ++DF+  G  KLS + VDQ TG+
Sbjct: 656 ESIEDILKQGDTFKALIIDFEKGGCPKLSRRRVDQETGE 694


>gi|315639994|ref|ZP_07895121.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
           DSM 15952]
 gi|315484256|gb|EFU74725.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
           DSM 15952]
          Length = 707

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 307/693 (44%), Positives = 456/693 (65%), Gaps = 18/693 (2%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           W GRPL +E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT+NY+E+ YAV
Sbjct: 10  WGGRPLSVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLTINYEEKMYAV 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GKIPGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QV   VM  + + SP + +
Sbjct: 69  GKIPGGFIKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCSPAMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189
           M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++++ S + L V+GT  A+ MVE
Sbjct: 129 MLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQNEESDIHLTVAGTAQAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249
             A ++SE  +L A++FGH   + ++    ++     K  + I      +++E++ + I 
Sbjct: 189 SGAKEVSEADMLGALLFGHEAIQELVAFQKEVVAAVGKPKMEIT---LLQVDEQVKKAIY 245

Query: 250 ED----LRVSCFIPEKYVRCKQIDDLKK--------KMVSYFSSEHSSWNEGEIVSVFED 297
           ++    ++ +    EK  R  +I  +K+        K ++    E S   + E+  + ED
Sbjct: 246 DEFYPTMKTAVMTEEKLAREDEIAKVKEIVKEAYAEKALALADDEASKLTK-EVKQIAED 304

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR ++   K+R DGR  + +R +S++VGLL R HGS LF RG TQA+   TL   
Sbjct: 305 LEKDVVRELITIDKIRPDGRQLDEIRALSSEVGLLPRVHGSGLFTRGQTQALSTCTLAPL 364

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  ++P   
Sbjct: 365 GEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIPDET 424

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++ IL+
Sbjct: 425 DFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYTILT 484

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL E++ 
Sbjct: 485 DIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILREALAQAKKARMEILEELTA 544

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + + R +L ++ P++E++ I P +I++VIG GG  I GI+E+TG K++ID DG V IAS
Sbjct: 545 TIDQPRAELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIEETGVKIDIDQDGKVSIAS 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I+ A ++I  +T   +V ++Y G+VV+V  FGAFV+    +DGLVHISQL+ ERV
Sbjct: 605 ADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLANERV 664

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           A   DVVK GD V VK+ + D +G++ LS K +
Sbjct: 665 ANVEDVVKLGDEVLVKVTEIDKQGRVNLSRKAM 697


>gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           EGD-e]
 gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL R2-561]
 gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J0161]
 gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
 gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           EGD-e]
 gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
          Length = 723

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 314/703 (44%), Positives = 455/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+++K++++  + ++    NE EI+S    +
Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEEVKEEILESYKAKELE-NESEILSEVAHI 298

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL
Sbjct: 299 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 358

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 359 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 419 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV 
Sbjct: 539 LTSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVY 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ 
Sbjct: 599 IASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAH 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 659 ERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
          Length = 699

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/691 (45%), Positives = 457/691 (66%), Gaps = 11/691 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G YV+NP + E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVSEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           E  A++++E  +L+AI FGH E K ++    E I  +  +  K+  +   +D + +E+  
Sbjct: 190 EAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPV--KQEFIPVERDEALVEKVK 247

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAK 301
           +   ++ L+ +    +K  R + +D LK+++V +F  E    NE    E+ S+  D+  +
Sbjct: 248 ALTEEKGLKDTVLTFDKQQRDENLDALKEEVVEHFIDEEDPDNESLINEVYSILNDLVKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG   D Q
Sbjct: 308 EVRRLIADEKIRPDGRKVDEIRPLDSEVGLLPRVHGSGLFTRGQTQALSVLTLGALGDYQ 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T  FPY
Sbjct: 368 LIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTDFPY 427

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G
Sbjct: 428 TIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQG 487

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M + +  
Sbjct: 488 MEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDA 547

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I +    
Sbjct: 548 PRKELSAYAPKVVTMHIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDQE 607

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            I+ A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S +R+ K  
Sbjct: 608 MIDRAKEIIEEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVE 667

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           DV+  GDT+ VK+ + D +G++  S K + Q
Sbjct: 668 DVLNIGDTIEVKITEIDKQGRVNASHKALTQ 698


>gi|188586076|ref|YP_001917621.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226702667|sp|B2A3A3|PNP_NATTJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|179350763|gb|ACB85033.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 718

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 316/694 (45%), Positives = 446/694 (64%), Gaps = 11/694 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TV  E AG  L LETG +A+Q++GAV   YG TVVL T    +  KD  +FFPLTV+Y+E
Sbjct: 4   TVSEEIAGYQLTLETGELAKQANGAVKVQYGNTVVLVTATASKEPKDDLNFFPLTVDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVGKIPGG+++RE +PTE   L +R+ DR IRPLF   ++N   ++  V+  D    
Sbjct: 64  RLYAVGKIPGGFIKREGKPTEKATLTARLTDRPIRPLFPDGFRNPVHIVSTVLSVDQNCP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P + S++ ASAAL +S +PF+GP+   +V  +N + V+ P +DE ++  LDL V+GT+DA
Sbjct: 124 PEIASIIGASAALSISDIPFDGPIASVKVGKVNDEIVVTPDVDEHEESQLDLVVAGTKDA 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243
           ++MVE EAN+L ED +L+AI+  H E K +I    +L +   ++ + ++    S +L  E
Sbjct: 184 IMMVEAEANELPEDEMLEAIMKAHEEIKKIITMQEQLVEQVGQKKMEVELDLPSDELVSE 243

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---------GEIVSV 294
           + ++  ED+     I +K  R   +D+ K+K+V +   +++S              I S 
Sbjct: 244 VEELALEDIEKVLQIKDKLEREDAMDEAKQKVVDHLLEKYNSEENEDEEEELKEKHIKSA 303

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F+ I  + +R+ ++ +  R DGR  + +R ++  V LL  THGS LF RG TQ + V TL
Sbjct: 304 FDSILKREMRSRIIHENSRPDGRGQKEIRPVTCDVDLLPNTHGSGLFTRGQTQVLNVCTL 363

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D Q +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA+ P++P
Sbjct: 364 GALGDVQILDGLDIEESKRYMHHYNFPPYSVGEAGFMKGPGRREIGHGALAERALKPMIP 423

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSE+ ES+GS+SM +VC SSL+LMDAGVPI K V+GIAMGL+K+GD   
Sbjct: 424 TEKDFPYTIRLVSEVLESNGSTSMGSVCASSLSLMDAGVPIEKAVSGIAMGLIKEGDQLA 483

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G ED LG MDFKVAGT+ GITA+QMD+KI G +  I+  AL+Q K G LHILN 
Sbjct: 484 ILSDIQGIEDFLGDMDFKVAGTEDGITALQMDIKISGTTREILKQALKQGKDGYLHILNI 543

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +SE R +L    PRV    I PD+IRNVIG GGK+I  I+++TG K++I+ DG + 
Sbjct: 544 MKQTISEPREELSPLAPRVIKKQIDPDKIRNVIGPGGKMINKIIDETGVKIDIEPDGLIY 603

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I+SS   + E A + I  +   PEV ++Y G+VV+   +GAFV     ++GLVHIS+L+ 
Sbjct: 604 ISSSDAEQAEQAIKAIDELIKEPEVGEVYLGKVVRTEKYGAFVEILPGKEGLVHISELAE 663

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +RV KT DV K GD + VK+++ D+RG+I LS K
Sbjct: 664 DRVGKTEDVAKVGDEILVKIINIDERGRINLSRK 697


>gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
 gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
          Length = 708

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/688 (45%), Positives = 462/688 (67%), Gaps = 10/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++ AGR L++E G++A+Q++GA L  YG+TVVL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  VDLAGRKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D   S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  +S AL +S +PFEGP+ G  V  ++ ++V+NP +DE ++  + L V+GT+DA+ M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDIHLTVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+++ E+V+L+AI+FGH + K +I    ++     KE + ++     + LE ++ +
Sbjct: 189 VEAGADEVPEEVMLEAIMFGHEQIKKLIAFQEEIVAAVGKEKVEVELYTVDADLERQVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303
           + + D+  +  + EK+ R   I ++K  + + F  +     E E+++   +I +K+V   
Sbjct: 249 IAEGDMNRAVQVQEKHARENAIKEVKSAVAAKFEEQDV---EEEVLNQVNEILSKLVKSE 305

Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R ++ ++KVR DGR  + +R +S++  LL RTHGS LF RG TQA+ + TLG   D Q 
Sbjct: 306 VRRLITEEKVRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 365

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D LS  +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT
Sbjct: 366 LDGLSVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPNEKDFPYT 425

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + IL+DI G 
Sbjct: 426 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTDIQGM 485

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT++G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   ++  
Sbjct: 486 EDHLGDMDFKVAGTENGVTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMSTIATP 545

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L ++ P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S     
Sbjct: 546 RQELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSIDQPM 605

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K  D
Sbjct: 606 NEKAKKIIEDLVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERIGKVED 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GD + VK+++ D +G++ LS K +
Sbjct: 666 VVSIGDEILVKVMEIDKQGRVNLSRKAI 693


>gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 630

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/624 (49%), Positives = 432/624 (69%), Gaps = 11/624 (1%)

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M
Sbjct: 1   KIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAM 60

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189
           +  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMVE
Sbjct: 61  IGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVE 120

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEM 244
            EA +L+ED +L A++F H+E + VI AI +LA   AK     +P    +     +  E 
Sbjct: 121 SEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEF 180

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
              I +   ++     K  R  ++ +LK ++V+  + E  S + GE+ + F +I+ + VR
Sbjct: 181 GDAISQAYTITV----KADRYARLGELKDQVVAKLAVEEGSPSAGEVKAAFGEIEYRTVR 236

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D
Sbjct: 237 ENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLD 296

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R
Sbjct: 297 TLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIR 356

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDED
Sbjct: 357 VVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDED 416

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR 
Sbjct: 417 HLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRN 476

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    E
Sbjct: 477 ELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAE 536

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++
Sbjct: 537 AARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDIL 596

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           KEG+ V V +LD D+RG+IKLS+K
Sbjct: 597 KEGEEVEVLVLDVDNRGRIKLSIK 620


>gi|134302408|ref|YP_001122378.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187610267|sp|A4IZA6|PNP_FRATW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134050185|gb|ABO47256.1| putative polyribonucleotide nucleotidyltransferase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 693

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 317/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   +P +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAVAPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|115315207|ref|YP_763930.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|122324796|sp|Q0BKU1|PNP_FRATO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115130106|gb|ABI83293.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
          Length = 693

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTYDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNTYTIALKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|254369705|ref|ZP_04985715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122664|gb|EDO66793.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 693

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 318/685 (46%), Positives = 466/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP + D     LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYFIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSE--HSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y FSS+   + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNTYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|322435940|ref|YP_004218152.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX9]
 gi|321163667|gb|ADW69372.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX9]
          Length = 817

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 322/695 (46%), Positives = 450/695 (64%), Gaps = 15/695 (2%)

Query: 5   HTVEIEWAG-RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           H V +E AG + +K ETGR+A+Q+ GA   T G+  +LAT V     K+G DFFPLTV Y
Sbjct: 3   HDVTVELAGGKHIKFETGRMAKQASGAAFTTSGDNAILATAVASPDPKEGIDFFPLTVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E TYA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQV+  V   D E
Sbjct: 63  REFTYAGGRIPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P V+ +  AS AL LS +PF GPV   +V  I G +++NP   E + S L++ V GT 
Sbjct: 123 NDPDVLGINGASCALALSDIPFHGPVGAVRVGLIEGNFIVNPTYAEREKSELNIMVVGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237
           D ++MVE  + + SE+ V+ AI F H E K +  AI +L K+  K      P+ +D +  
Sbjct: 183 DGIVMVESGSKETSEESVVSAIEFAHVEIKKICAAIEELVKLAGKTKRTVTPVEVDQEYL 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIP-EKYVRCKQI-DDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             L+ ++ + + + L        E Y   K I D+LKK +      E  +    ++   +
Sbjct: 243 GSLKAKVGERLSDALDTQKHPKFESYALVKTIKDELKKDL-----PEGDAAAGKKLSKYY 297

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++  + R  +L+ ++R D R  + +R ++ + G+L R HGS+LF RG+TQA+V  TLG
Sbjct: 298 ELMRESIFRDQVLNDRIRPDHRAFDQIRLVTVETGVLPRVHGSALFTRGETQALVSATLG 357

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T +D Q ++S +G  +  FM+HYNF P + GEV RM    RREIGHG LA RAI  VLP 
Sbjct: 358 TTDDAQRMESYTGEFKRRFMLHYNFPPFSVGEVGRMTGVGRREIGHGALAWRAIEAVLPG 417

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             + PYTLR+VS+I ES+GSSSMATVCG+SLALM AG+P+   VAG+AMGLVK+GD + I
Sbjct: 418 EDESPYTLRVVSDILESNGSSSMATVCGASLALMAAGIPLKGAVAGVAMGLVKEGDKYAI 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI+G EDH G MDFKVAGT  GITA+QMD+KI GI+  IM  AL+QA+RGRL +L+ M
Sbjct: 478 LTDIAGAEDHYGDMDFKVAGTRKGITALQMDIKIMGITPQIMREALEQARRGRLELLDTM 537

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +S +  Q   F PR+  M IP D+IR++IG GGKVIRGI++ TG K+++DD G V +
Sbjct: 538 DATISSASEQKSAFAPRIHSMQIPTDKIRDLIGPGGKVIRGIIDATGVKIDVDDTGRVNV 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ASS    +  A +MI  +T  PE+ K Y G+VV++ +FGAFV      DGL+H+S+++  
Sbjct: 598 ASSDADGLSRAIQMITDLTATPEIGKTYLGRVVRLAEFGAFVEIFPGTDGLLHVSEIAEH 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV +  D ++EGD + VK+L  +   +IKLS K V
Sbjct: 658 RVKEVKDELREGDQILVKVLAIEGN-RIKLSRKAV 691


>gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319]
 gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319]
          Length = 708

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/688 (45%), Positives = 461/688 (67%), Gaps = 10/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++ AGR L++E G++A+Q++GA L  YG+TVVL+T    +  K+  DFFPLTVNY+ER Y
Sbjct: 10  VDLAGRKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKN-VDFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D   S  +
Sbjct: 69  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  +S AL +S +PFEGP+ G  V  ++ ++V+NP +DE ++  + L V+GT+DA+ M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDIHLTVAGTKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A+++ E+V+L+AI+FGH + K +I    ++     KE + +      + LE ++ +
Sbjct: 189 VEAGADEVPEEVMLEAIMFGHEQIKKLIAFQEEIVAAVGKEKVEVALYTVDADLERQVRE 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303
           + + D+  +  + EK+ R   I ++K  + + F  +     E E+++   +I +K+V   
Sbjct: 249 IAEGDMNRAVQVQEKHARENAIKEVKSAVAAKFEEQDV---EEEVLNQVNEILSKLVKSE 305

Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R ++ ++KVR DGR  + +R +S++  LL RTHGS LF RG TQA+ + TLG   D Q 
Sbjct: 306 VRRLITEEKVRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 365

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D LS  +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT
Sbjct: 366 LDGLSVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPNEKDFPYT 425

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + IL+DI G 
Sbjct: 426 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTDIQGM 485

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT++G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   ++  
Sbjct: 486 EDHLGDMDFKVAGTENGVTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMSTIATP 545

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L ++ P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S     
Sbjct: 546 RQELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSIDQPM 605

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K  D
Sbjct: 606 NEKAKKIIEDLVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERIGKVED 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GD + VK+++ D +G++ LS K +
Sbjct: 666 VVSIGDEILVKVMEIDKQGRVNLSRKAI 693


>gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum
           NCIB 8327]
 gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum
           NCIB 8327]
          Length = 732

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 329/700 (47%), Positives = 461/700 (65%), Gaps = 23/700 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           G+ + +ETG++A+Q+DG+ +    +T+VLATVV  ++     QDFFPL V Y+E+  A G
Sbjct: 12  GKVITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFPLQVEYREKYSAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+II+V+  D  +   V+  
Sbjct: 72  KFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDTINDADVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           +AASAA+M+S +PF  P+   +V  INGQ+++NP  +E Q S LD+ + GT+D + M+E 
Sbjct: 132 IAASAAIMVSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDLDICIGGTEDTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMS 245
           E  ++SE  +LDAI FGH   K +     +LA   AK      P V  ++  + +E   +
Sbjct: 192 EMKEISEAEMLDAIKFGHEAIKKLCAFQKELAAEVAKPKRAFAPTVAPAELVAFIEANCA 251

Query: 246 QMIKEDLRVSCFIPEKYVRCKQI-DDLKKKMVSYFSS---EHSSWN--------EGEIVS 293
             +K          E+  R K I  +   K + +FSS   E  + N        E  I  
Sbjct: 252 AELKALAYTPLAKEERSDRTKAIYKETIAKTLEHFSSITAEEIAANPEKALCQSEHMIDE 311

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
              D++ KV+R ++LD   R+DGR  E VR IS ++GL+ R HGS+LF RG+TQA+V +T
Sbjct: 312 CIHDVEKKVMRHMILDDSKRLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLT 371

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++D Q VD+L+  +   FM+HYNF P + GE  R+G   RREIGHG LA RAI  V+
Sbjct: 372 LGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGETGRVGGTGRREIGHGNLAERAIKMVM 431

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+VS+I ES+GSSSMA+VCG +LA MD G+P+ KPV+GIAMGL+K+GD +
Sbjct: 432 PAEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRY 491

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+QA++GRLHIL+
Sbjct: 492 AVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALEQARKGRLHILD 551

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M++ + ESR  +G++ PR+  + IP D I  VIG GG+ IR I E+TGA++NIDDDGTV
Sbjct: 552 VMTEAIPESREDIGKYAPRLTSIQIPVDAIGMVIGKGGETIRSITEETGAEINIDDDGTV 611

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLVHISQL 652
            IA SS    +AA E I+++   PEV  IY G+V  + D  GAFV F    DGLVHIS++
Sbjct: 612 TIACSSPEGTKAAVETIKTLVSKPEVGTIYMGKVRDIRDELGAFVEFLPKTDGLVHISEI 671

Query: 653 STERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689
           + ER+AK SDV+K G+ V VKL+D   D R GK K ++ +
Sbjct: 672 ARERIAKVSDVLKPGERVKVKLIDIRKDPRTGKTKFALSI 711


>gi|94969022|ref|YP_591070.1| polynucleotide phosphorylase/polyadenylase [Candidatus Koribacter
           versatilis Ellin345]
 gi|123381514|sp|Q1IQ54|PNP_ACIBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94551072|gb|ABF40996.1| 3' exoribonuclease [Candidatus Koribacter versatilis Ellin345]
          Length = 815

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 322/694 (46%), Positives = 452/694 (65%), Gaps = 13/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V TVE    G+ L  ETG++A+Q+ G+ +   G++VVLAT   +   ++G DFFPLTV+Y
Sbjct: 7   VATVEF-TGGKSLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E TYA G+ PGG+++RE RP+E EIL SR IDR IRPLF + ++ ETQVI  V+  D E
Sbjct: 66  REYTYAGGRFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSE 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P V  +  ASAAL +S +PF GP+   +V  I GQ ++NP  DE + S L++ V GT 
Sbjct: 126 NDPDVCGINGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVGTA 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237
           + ++M+E  A++ +E+ V+ AI FGH E K +   ISKLAK   K      P+ +D    
Sbjct: 186 EGIVMIESGAHEATEEEVVSAIEFGHGEIKKICAVISKLAKEVGKTKRTVAPVELDQPYL 245

Query: 238 SKLEEEMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
             L +++   + + L    +   E Y + K+I   K K+     ++  +  + ++   +E
Sbjct: 246 DGLRKKIGADLADALNTEKYPKSESYAKVKEI---KSKLKEEIPADDDAALK-KLGKYYE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++  + R  +  +K R DGR  + +R I  +V +L RTHGS++F RG+TQA+V  TLGT
Sbjct: 302 LLREDIFRQQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGT 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +D Q ++   G  +  FM+HYNF P + GEV+ +    RREIGHG LA RA+  VLP  
Sbjct: 362 GDDMQRMEGFEGEAKKRFMLHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSE 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            ++PY +R+VS+I ES+GSSSMA++CG SL+LMDAGVP+  PVAGIAMGLVK+GDD+ IL
Sbjct: 422 DKWPYAMRVVSDILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI+G EDH G MDFKVAGT  GITA+QMD+KIGGI+  IM  AL+QA+RGRL IL++M+
Sbjct: 482 TDIAGAEDHYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRGRLFILDKMN 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +V+   R +L EF PR   + IP D+IR++IG GGKVIRGIVE TG K++++D G V +A
Sbjct: 542 EVIQSPRTELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDSGKVNVA 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS     + A +MI  IT   EV K Y G V ++ DFGAFV      DGL+HIS+++  R
Sbjct: 602 SSDQEAAKKALKMIGDITATAEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEHR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +    D + EGD V VK+L  D   +IKLS K V
Sbjct: 662 IKDVKDELHEGDQVLVKVLAVDGN-RIKLSRKAV 694


>gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 698

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/691 (45%), Positives = 460/691 (66%), Gaps = 9/691 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++++ GRPL++E G++A+Q+ GAVL  YGETVVLAT V  +    G DFFPLTVNY+E+ 
Sbjct: 7   KLDFRGRPLQVEIGQVAKQASGAVLVRYGETVVLATAVGSKKAGTG-DFFPLTVNYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGK+PGG+L+RE RP+E+  L +R+IDR IRP+F    +NE Q++  V+  D ++SP 
Sbjct: 66  YAVGKVPGGFLKREGRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           + +M  AS AL +S +PF+GP+ G +V  ++GQ ++NP +D+     +DL V+GT+ A+ 
Sbjct: 126 MAAMFGASLALGVSDVPFDGPIAGVKVARVDGQLIINPSVDQLATTEIDLTVAGTKTAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMS 245
           MVE +A ++ E  +L+A++FGH   K ++    ++     KE   +  +K    + ++++
Sbjct: 186 MVESDAAEVPEAEMLEALLFGHEAIKELVAFQEEIISAVGKEKFELTLAKPLPDIVDQVN 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSV---FEDIQA 300
           ++ +  +  +    EK  R + + D+    V YF +++ S  E E  I SV     D++ 
Sbjct: 246 ELFQAKMVQAIQTEEKKAREEAVADVMAAAVEYFQTKYDSNPEFEEIIKSVNIALHDLEK 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++  ++VR DGR  + +R +S++VGLL R HGS LF RG TQA+ V TL    + 
Sbjct: 306 DEVRRLITKERVRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREH 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L       FM HYNF P + GE  RMG+P RRE+GHG L  RA+  V+P   +FP
Sbjct: 366 QIIDGLGTEDYKRFMHHYNFPPYSVGETGRMGSPGRREVGHGALGERALKHVIPSEEEFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479
           Y +R+VSE+ ES+GSSS A++CGS+LA+MDAG+PI  PVAGIAMGLV D D D+ IL+DI
Sbjct: 426 YVIRLVSEVLESNGSSSQASICGSTLAMMDAGIPIKAPVAGIAMGLVMDDDADYTILTDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK  R+ IL++++  +
Sbjct: 486 QGLEDHLGDMDFKVAGTAKGITALQMDIKIQGITEQILREALAQAKVARMQILDQITSTI 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ P++E++ I  DQI+ VIG GG+ I  I+++TG K++IDD+G V I S  
Sbjct: 546 AAPRPELSKYAPKIEMVKIDIDQIKVVIGKGGETINKIIDETGVKIDIDDEGNVSIYSED 605

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A I  A+++I S+T V    ++Y G+VV++  FGAFV     + GL+HISQ++ ER+ K
Sbjct: 606 QAMINKAKDIIESLTHVVAAGEVYTGKVVRIEKFGAFVEILPGKQGLLHISQIAKERIDK 665

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DV+  GD V VK+ + DDRG+I LS KV+
Sbjct: 666 VEDVLAMGDDVTVKVTEIDDRGRINLSRKVL 696


>gi|227550843|ref|ZP_03980892.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           TX1330]
 gi|293379257|ref|ZP_06625403.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           PC4.1]
 gi|227179941|gb|EEI60913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           TX1330]
 gi|292642053|gb|EFF60217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           PC4.1]
          Length = 736

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/702 (42%), Positives = 459/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R + I+ +K  +   ++ + +   +      E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729


>gi|293573060|ref|ZP_06684001.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E980]
 gi|291606879|gb|EFF36260.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E980]
          Length = 736

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 300/697 (43%), Positives = 458/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R + I+ +K  +   ++ + +   +      E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +RV K  DVVK GD + VK+ + D +G++ LS K +
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAM 724


>gi|293556873|ref|ZP_06675434.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1039]
 gi|291600957|gb|EFF31248.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1039]
          Length = 736

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 302/702 (43%), Positives = 458/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP V +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAVAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++ + +   +      E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729


>gi|257887903|ref|ZP_05667556.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,141,733]
 gi|257893296|ref|ZP_05672949.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,408]
 gi|257896479|ref|ZP_05676132.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com12]
 gi|257899445|ref|ZP_05679098.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com15]
 gi|257823957|gb|EEV50889.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,141,733]
 gi|257829675|gb|EEV56282.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,408]
 gi|257833044|gb|EEV59465.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com12]
 gi|257837357|gb|EEV62431.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com15]
          Length = 708

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/702 (42%), Positives = 459/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R + I+ +K  +   ++ + +   +      E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
 gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
          Length = 708

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 319/691 (46%), Positives = 450/691 (65%), Gaps = 13/691 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L++ETG++A Q++GAVL  YG+T V   V   +  ++G DFFPL+V+++E+ 
Sbjct: 6   EMELAGRKLRIETGKLAEQANGAVLVRYGDTTVFVAVTASKEPREGIDFFPLSVDFEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGGY++RE +PTE  IL SR+IDR IRPLF K Y+N+ QV+   +  + +  P 
Sbjct: 66  YAVGKIPGGYIKREGKPTEKAILTSRLIDRPIRPLFPKGYRNDVQVVAMPLSVEPDVPPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           VV+MV ASAAL +S +PFEGP+    V  ++G+ V+NP   + + S L L V+GT+DA++
Sbjct: 126 VVAMVGASAALSISDIPFEGPIGAVLVGLVDGELVINPDAAQRERSRLHLTVAGTKDAIM 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVI---EAISKLAKMCAKEPIV--IDSKDFSKLE 241
           MVE  AN++ ED +L+AI+FGH   K ++   E I     +    P +  +D +  + + 
Sbjct: 186 MVEAGANEVPEDKILEAIMFGHEHIKQLVAFQEQIVSEVGIPKNVPELHHVDPEIETAVR 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E    MI E +R +     K  R  Q+D +K+ +  +F+ E     E EI     +I  +
Sbjct: 246 EYAFDMISEAVRSN----NKQGREDQMDKVKEDIFEHFA-EAFPEREAEIDEAVYNITKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L +  R DGR  + +R IS +VGL+ R HGS LF RG TQ + + TLG   DEQ
Sbjct: 301 CVRKMVLTEGARPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            ++ LS  +   ++ HYN  P +TGE   M  P RREIGHG LA RA+ P++P   +FPY
Sbjct: 361 MLEDLSLEESKRYIHHYNMPPYSTGEAKMMRGPGRREIGHGALAERALEPMIPSQEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+KD   D   IL+DI
Sbjct: 421 TIRLVSEVMSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLMKDEQSDKVAILTDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT  G+TA+QMD+K+ GI  +I+  AL+QA  GR+ I+N+M +V+
Sbjct: 481 QGLEDFFGDMDFKVAGTADGVTAIQMDIKVKGIDRSILEAALKQAYEGRMFIMNKMLEVI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE R ++  + P++  M I PD+IR+VIG GGKVI  I+  TG K++I++DGT+ IA+  
Sbjct: 541 SEPRKEVSPYAPKIMTMTIDPDKIRSVIGSGGKVINKIIADTGTKIDIEEDGTIYIAAPD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A  +I  I    E   +Y G+V ++M FGAFV     ++GLVHIS+LS E VAK
Sbjct: 601 SESGKKAMRIIEGIVKDVEAGDVYLGKVTRIMPFGAFVEILPGKEGLVHISKLSKEHVAK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ D D +G+I LS K V
Sbjct: 661 VEDVVKVGDEILVKVTDIDKQGRINLSHKAV 691


>gi|185535745|gb|ACC77873.1| polyribonucleotide nucleotidyltransferase [Staphylococcus xylosus]
          Length = 697

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 308/687 (44%), Positives = 460/687 (66%), Gaps = 7/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWA R L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPL VNY+E+ YA
Sbjct: 11  EWANRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLMVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP++   L +R+IDR IRPLF K YK + Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP + + + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGEYIINPTVAQKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQM 247
           E  A++++E  +L+ I FGH+E + ++    ++      E    +  +    L E+++Q+
Sbjct: 190 EAGASEITESEMLEGIFFGHSEIQRLVNFQQEIVDHIQPEKKAFVPVEKEETLVEQVTQL 249

Query: 248 IKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFEDIQAKVV 303
            + + L+ +    +K  R   +D+LK+K+ + F  E  + NE    E+ S+  D+  + V
Sbjct: 250 TEANGLKDAVLTFDKQQRDINLDNLKEKVAAEFIDETDADNEALIKEVNSILNDLVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ ++K+R DGR ++ +R + ++VG+L R HGS LF RG TQA+ V+TLG+  + Q +
Sbjct: 310 RRLIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQIL 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   ++  FM HYNF   + GE   + +P RREIGHG L  RA+  ++P    FPYT+
Sbjct: 370 DGLGEEEQKRFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIPDVKDFPYTV 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G+++ I+  AL+QA+ GRL IL+ M + +   R
Sbjct: 490 DALGDMDFKVAGTSEGITAIQMDIKIDGLTKEIIKEALEQARVGRLAILDHMLQTIDTPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  F P+V  M I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I +     I
Sbjct: 550 NELSAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDKNAI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + AR++I  IT   EV ++Y+G+V ++  +GAFV     +D LVHISQ++ ER+ K  DV
Sbjct: 610 DQARKIIEDITREAEVGQVYEGKVKRIEKYGAFVELFPGKDALVHISQIANERIEKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +K GDT  +K+ + D +G++  S KV+
Sbjct: 670 LKVGDTFKIKVTEIDKQGRVNASHKVL 696


>gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 699

 Score =  608 bits (1568), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 321/708 (45%), Positives = 461/708 (65%), Gaps = 27/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TVVL+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  LI+R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  S+P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEVSTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K + E   + AK+  KE I     +F K
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEEFAKLYGKENI-----EFEK 235

Query: 240 LEEEMSQMIKE--------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290
             EE+  ++K+         L+ +     K  R + +D L++++++ F  E +    E E
Sbjct: 236 --EEVLPLVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFIEENYPDIPEEE 293

Query: 291 ----IVSVFE----DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
               I+S F+    D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF 
Sbjct: 294 LPEDIISEFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 353

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ++ + TLGT+ DEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG
Sbjct: 354 RGETQSLAITTLGTKSDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 413

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI
Sbjct: 414 SLAERALRYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 473

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL 
Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 533

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   R  IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG
Sbjct: 534 QAHEARQQILEVMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTG 592

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           A V+I DDG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     
Sbjct: 593 ATVDITDDGLVSVFAKDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPG 652

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+HIS++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 653 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
 gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
          Length = 805

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 331/703 (47%), Positives = 465/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDE-DQGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    + +V     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292
             K+  ++S    E   V+     K   C  +    K      + +H      + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKPECSSLMPPGKACTQICAGKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++   D+  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGI-DKDHVQLSMRRVDQDSG 701


>gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 700

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 305/684 (44%), Positives = 453/684 (66%), Gaps = 5/684 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E++ AG+ L ++TG++A+ ++G+ L  YG+TVVL T    +  ++G DFFPL+V+Y+ER 
Sbjct: 6   ELDLAGKKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +PTE  IL SR+IDR IRPLF   Y+N+ QVI  V+  D +  P 
Sbjct: 66  YSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVL 186
           +V+M+ +S AL +S +PF GP     V  ++G++++NP L   ++  L L VSGT+DA++
Sbjct: 126 IVAMIGSSVALSISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDLHLTVSGTKDAIM 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEM 244
           MVE  AN++ E+V+LDAI++ H   K +++ I  + K     K  + I   D S LE  +
Sbjct: 186 MVEAGANEVPEEVMLDAIMYAHEYIKKIVDFIEGIVKEVGLPKAEVTIHEID-SNLERLV 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            +   E +  +    EK  R   ID ++++++ +F  E+   N  +I  V   I  + +R
Sbjct: 245 REFATEKIYNALRTEEKKERNDNIDKVEEEVLEHFKDEYPD-NLADIDEVLYTITKEQMR 303

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++K+R+DGR  + +R I+  +G+L RTHGS++F RG TQ + V TLG   D Q +D
Sbjct: 304 KMITEEKIRVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILD 363

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   +M HYNF P + GE   +  P RREIGHG LA RA+ P++P   +FPYT+R
Sbjct: 364 GLGDEESKRYMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIR 423

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+G+   IL+DI G ED
Sbjct: 424 LVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGETVSILTDIQGIED 483

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT+ GITA+QMD+KI GI  +I+  AL++A++GRL ILN+M + + E R 
Sbjct: 484 FLGDMDFKVAGTEKGITAIQMDIKIAGIDRDILSAALEKARKGRLFILNKMLETIKEPRK 543

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + PR+  + + P++IR++IG GGK I  I+  TG K++I+DDG V I+S+ L   E
Sbjct: 544 ELSPYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVKIDIEDDGRVFISSTDLKAGE 603

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+ +I +IT   EV  IY G+V ++  FGAFV     ++GLVHIS+L  + V K  DVV
Sbjct: 604 KAKMIIEAITKDVEVGAIYLGKVTRIASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVV 663

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
             GD + VK+ + D +G+I LS K
Sbjct: 664 NIGDEILVKVTEIDKQGRINLSRK 687


>gi|69248510|ref|ZP_00604759.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
 gi|258615105|ref|ZP_05712875.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           DO]
 gi|293567824|ref|ZP_06679165.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1071]
 gi|294614599|ref|ZP_06694503.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1636]
 gi|294618481|ref|ZP_06698045.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1679]
 gi|294621222|ref|ZP_06700407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           U0317]
 gi|314938851|ref|ZP_07846122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a04]
 gi|314943656|ref|ZP_07850410.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133C]
 gi|314949091|ref|ZP_07852451.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0082]
 gi|314952184|ref|ZP_07855202.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133A]
 gi|314994554|ref|ZP_07859820.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133B]
 gi|314996553|ref|ZP_07861590.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a01]
 gi|68194404|gb|EAN08910.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
 gi|291589409|gb|EFF21216.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1071]
 gi|291592501|gb|EFF24106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1636]
 gi|291595238|gb|EFF26567.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1679]
 gi|291599218|gb|EFF30250.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           U0317]
 gi|313589294|gb|EFR68139.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313591076|gb|EFR69921.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133B]
 gi|313595716|gb|EFR74561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133A]
 gi|313597693|gb|EFR76538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133C]
 gi|313641862|gb|EFS06442.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a04]
 gi|313644507|gb|EFS09087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0082]
          Length = 736

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/702 (42%), Positives = 458/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++ + +   +      E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729


>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
 gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
          Length = 705

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/691 (44%), Positives = 460/691 (66%), Gaps = 12/691 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+ AG  +K ETG+ A+Q++G+V+A YG+T VL T       ++G D+FPL VNY+ER Y
Sbjct: 7   IDVAGGKMKFETGKYAKQANGSVVARYGDTTVLVTATMSEP-REGIDYFPLMVNYEERVY 65

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A+GKIPG   RRE RP +   L +R+IDR +RPLF + ++++ Q+I  V+  D +  P +
Sbjct: 66  AIGKIPGSITRREGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDI 125

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +++  AS AL LS +PF+GP+ G +V  ++G+ V+NP  +E + S LDL V+GT+DAVLM
Sbjct: 126 LALNGASVALTLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLDLTVAGTRDAVLM 185

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246
           VE  AN++SEDV+LDAI   H E K ++    ++ +   K+       + + +L+EE+ +
Sbjct: 186 VEAGANEVSEDVMLDAIELAHQEIKRLVLLQEEIGEEAGKKKFEFTKDEITPELDEEIRK 245

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGE-------IVSVFED 297
            I  D+  +  IPEK  R  ++D++K+  + YF    E++  +  E       +    E 
Sbjct: 246 YISSDMENALRIPEKLERNAKVDEIKENTLQYFEDMFENNGLDNEEKNKQLKMVERTIEK 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  + VR +++++ +R DGR  + +R I  +VG L R HGS +F RG TQA+ VVTLG  
Sbjct: 306 VMKEKVRKMIIEEGIRPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALSVVTLGAT 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +  L   +   +M HYNF P + GE S + +P RREIGHG L  RA+ PV+P   
Sbjct: 366 SDEQILFGLGEEETKRYMHHYNFPPYSVGETSPLRSPGRREIGHGALGERALQPVIPDQE 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+ ES+GS+S A++CGS+LALMDAGVPI +PVAGIAMGL+K+ +  +ILS
Sbjct: 426 EFPYTIRVVSEVLESNGSTSQASICGSTLALMDAGVPIKEPVAGIAMGLLKEDEKVVILS 485

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT +GITA+QMD+KI GIS+ I+  AL++A+ GRL+IL++M +
Sbjct: 486 DIQGLEDFYGDMDFKVAGTRNGITALQMDIKIHGISKEILKKALKRAREGRLYILDKMLQ 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ + R +L  + P +  M + PD+IR++IG GGK+I  I+++TG +++IDDDG+V I +
Sbjct: 546 VIDKPRPELSPYAPLMITMKVSPDKIRHIIGPGGKIINKIIDETGVEIDIDDDGSVYILA 605

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                   A+E+I  +T   EV  IY+G+V K+ +FGAFV     R+GLVHIS+L+   V
Sbjct: 606 QDQESGNRAKEIINKLTKEVEVGDIYEGRVKKITNFGAFVEILPGREGLVHISELADHHV 665

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  D+VK GD + VK+++ D+ G+I LS K
Sbjct: 666 KKVEDIVKIGDRIPVKVIEIDELGRINLSRK 696


>gi|312901916|ref|ZP_07761179.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0470]
 gi|311290983|gb|EFQ69539.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0470]
          Length = 704

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/697 (43%), Positives = 456/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++++ ++A++++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVKSAQLAKKANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|257878824|ref|ZP_05658477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,230,933]
 gi|257881461|ref|ZP_05661114.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,502]
 gi|257890683|ref|ZP_05670336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,410]
 gi|261207096|ref|ZP_05921785.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
           6]
 gi|289565902|ref|ZP_06446342.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           D344SRF]
 gi|293563621|ref|ZP_06678065.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1162]
 gi|257813052|gb|EEV41810.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,230,933]
 gi|257817119|gb|EEV44447.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,502]
 gi|257827043|gb|EEV53669.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,410]
 gi|260078724|gb|EEW66426.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
           6]
 gi|289162275|gb|EFD10135.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           D344SRF]
 gi|291604421|gb|EFF33911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1162]
          Length = 708

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/702 (42%), Positives = 458/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++ + +   +      E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|260558389|ref|ZP_05830585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           C68]
 gi|260075563|gb|EEW63869.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           C68]
          Length = 708

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/702 (42%), Positives = 458/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++ + +   +      E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLFKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
 gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
          Length = 703

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 317/708 (44%), Positives = 458/708 (64%), Gaps = 27/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TVVL+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  LI+R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEVNTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K + E     AK+  KE I     +F+K
Sbjct: 185 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEVFAKLYGKENI-----EFTK 239

Query: 240 LEEEMSQMIKE--------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------SS 285
             EE+  ++K+         L+ +     K  R + +D L++++++ F  E+        
Sbjct: 240 --EEVLPLVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFVEENYPDVPEEE 297

Query: 286 WNE---GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
             E    E  + + D+   +VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF 
Sbjct: 298 LPEDVIAEFKTYYHDLMKILVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 357

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ++ + TLGT+ DEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG
Sbjct: 358 RGETQSLAITTLGTKADEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 417

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI
Sbjct: 418 SLAERALRYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 477

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL 
Sbjct: 478 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 537

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   R+ IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI+EQTG
Sbjct: 538 QAHEARIQILEVMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIEQTG 596

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           A V+I DDG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     
Sbjct: 597 ATVDITDDGLVSVFAKDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPG 656

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+HIS++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 657 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703


>gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
 gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
          Length = 695

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 313/680 (46%), Positives = 455/680 (66%), Gaps = 7/680 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPLTVNY+E+ YA
Sbjct: 11  QWAGKELTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+  + +  P + 
Sbjct: 70  VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP +++ ++  +DL V+GT+DA+ MV
Sbjct: 130 AMLGSSLALSVSNIPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKIDLKVAGTKDAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247
           E  A ++SE+V+L+AI+FGH E K +I    ++     +E + ++ K   + +  E+  +
Sbjct: 190 EAGAEEVSEEVMLNAIMFGHEEIKRLIAFQQQIVDEIGQEKMEVELKVIDENIYNEVLDL 249

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303
              +++ +  I +K  R + I  +K+++++ F    +  +E +IV       + I    V
Sbjct: 250 SLTEMKSAIAIKDKQERDEAISVVKERVLAVFEERVTDEDELDIVKEAKLSLDKIVKDEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  + + KVR DGR    +R +++++ +L RTHGS+LF RG TQ++ VVTLG   DEQ +
Sbjct: 310 RREITEDKVRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+P    FPYT+
Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + + IL+DI G E
Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL+ M+ ++SE R
Sbjct: 490 DHLGDMDFKVAGTSEGITALQMDIKIEGLSEQILKESLEQARVGRLQILDHMNNIISEPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++  F P+++I+ I P++I++VIG GGKVI  I+E+TG K++I+  G V I+S  +  I
Sbjct: 550 EEVSTFAPKIKIIRIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQTGEVFISSPEIDGI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A E+I +IT   EV ++Y  +V ++  FGAFV      D LVHIS+LS ERV K  DV
Sbjct: 610 NKAIEIIENITREAEVGEVYLAEVKRIEKFGAFVELFPGVDALVHISKLSAERVNKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKI 683
           VK GDT+ VK++  D++G++
Sbjct: 670 VKIGDTLKVKVIKIDEKGRV 689


>gi|329122064|ref|ZP_08250672.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327466871|gb|EGF12387.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 697

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/697 (42%), Positives = 469/697 (67%), Gaps = 11/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T ++E AGRPL +ETG++A+Q+ G+VL  YG+TVVL    + +  ++G DFFPLT
Sbjct: 1   MFE--TFQMELAGRPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGK+PGG+LRRE RP  + +L +R+IDR IRPLF K  +++  V+  V+  
Sbjct: 59  VDYEEKMYSVGKMPGGFLRREGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D +++P +  ++ ASA++ +S +P++GPV G +V  ++G++V+NP  ++ ++ ++++ V+
Sbjct: 119 DYDNAPELCGLLGASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERSTMNITVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G++ A+LMVE  A + SE+ VLDAI++ H   K ++E   K+ +   K+        FS+
Sbjct: 179 GSETAILMVEGGAKEASEEEVLDAIMYAHTVIKQLVEFQKKIIEKVGKQK---KELVFSE 235

Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           + EE+ + I E    +LR + F P+K  R   +++++K+  ++F   +   NE ++++  
Sbjct: 236 IPEEIEKAIYEYAENNLREAIFNPDKLTREAHMEEVRKEAENHFKEIYPD-NESDVITCL 294

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +   +VR ++   K+R DGR  + +R I+ +VG++ RTHGS+LF RG TQA+ + TL 
Sbjct: 295 DHLTKSIVRKMISVDKIRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLA 354

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L+      ++  YNF     GE      P RREIGHG LA RA+ PV+P 
Sbjct: 355 PMNETQIIDDLTLVNEKRYIHQYNFPSYCVGETKSSRGPGRREIGHGALAERALEPVIPS 414

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSEI ES+GSSS A+VCGS+++LM+AGVPI  PVAGIAMGLV +G+ F I
Sbjct: 415 VDEFPYAIRVVSEILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGEHFTI 474

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GITA+QMD+KI G+S  I++ AL+QA +GR+ IL ++
Sbjct: 475 LTDIQGMEDALGDMDFKVAGTAKGITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKI 534

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++ +S+    L  + P++  + IP D+IR+VIG GGK I  I+ +TG K+++++DG V I
Sbjct: 535 AECISKPAEHLSPYAPKIITLRIPVDKIRDVIGAGGKTINKIITETGVKIDVEEDGRVYI 594

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS      + A++M+ S+T   +  ++Y G+V ++M FG FV     ++G+VHISQL+ +
Sbjct: 595 ASVDEEAAQKAKKMVESLTHEVKPGEVYLGKVTRLMKFGVFVEILPGQEGMVHISQLALK 654

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           RV K  DVV EGD + VK+++ DD+G+I LS K + Q
Sbjct: 655 RVEKVEDVVHEGDEIMVKVMEIDDKGRINLSRKALLQ 691


>gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12]
          Length = 743

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/705 (44%), Positives = 457/705 (64%), Gaps = 19/705 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+EIE AGR LK+ TG+IARQS GA++  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 37  MFDEKTLEIELAGRSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLT 96

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  LI+R+IDR IRP+F + +  +  ++  V   
Sbjct: 97  VDYIEKFYAAGKFPGGFNKRESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSF 156

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++A+S AL +S +PF GPV G  V YI+G++VLNP  ++ + SL DL V+
Sbjct: 157 DEKNTPDYLGIIASSLALSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSLLDLSVA 216

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K +     +  K+C KE I  + ++   
Sbjct: 217 GTKEAVNMVEAGAKELDEETMLKAILFAHENIKKICAFQEEFVKICGKEKITFEKEEVDP 276

Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286
           +   +S  I+E     L+ +     K  R + +D L+++++  F ++H            
Sbjct: 277 M---ISSFIEEHGHERLQQAVLTLGKKNREEAVDSLEEELLEAFVAKHYPEIPEEELPEE 333

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   + D+   +VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+T
Sbjct: 334 PILAFKKYYHDLMKTLVREAILYKKHRVDGRSTTEIRPLDAQINVLPIPHGSALFTRGET 393

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+EDEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA 
Sbjct: 394 QSLATATLGTKEDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 453

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+  V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL
Sbjct: 454 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 513

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA  
Sbjct: 514 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHV 573

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R  IL  M+  +S S   L    PR++ + IP D+I  +IG  GK I+GI+E+TG+ ++
Sbjct: 574 ARQQILEVMNAAIS-SPADLKPNVPRIQQIMIPKDKIAILIGPAGKNIKGIIEETGSTID 632

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I DDG V I S     +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL
Sbjct: 633 ITDDGKVSIFSKDADVLEHTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 692

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +HIS++S ERV+   DV+K GD   VK++  ++ GKI LS K +D
Sbjct: 693 LHISEISKERVSNVEDVLKIGDVFKVKVISMEN-GKIALSKKKLD 736


>gi|210622620|ref|ZP_03293280.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
 gi|210154121|gb|EEA85127.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
          Length = 695

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 303/688 (44%), Positives = 452/688 (65%), Gaps = 10/688 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+AGR L +E G+I   ++G  +  YG++VV+         +DG DFFPL+V+Y+E+ Y+
Sbjct: 10  EFAGRELSVEVGKICEMTNGNCIVKYGDSVVMVNTTKSAEPRDGIDFFPLSVDYEEKLYS 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+L+RE +P+E  IL SR+IDR IRPLF K ++N+ QV+  V+  D + +P +V
Sbjct: 70  VGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPDIV 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF GP     +  ++G++V+NP  ++ + S + L VSGT+DA++MV
Sbjct: 130 AMIGSSVALSISDIPFNGPTGSVCIGLVDGEFVVNPNAEQREKSEMHLVVSGTKDAIMMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           E  A ++SED +L AI+F H   K ++E I ++     KE    +       +E++   +
Sbjct: 190 EAGAQEVSEDTMLKAILFAHEHIKKIVEFIEEIVAGSGKEK---EEVKLYHADEDIEAQV 246

Query: 249 KE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
           KE     +R +    EK  R + +D +K++  +YF  +  ++ E  G+I  V + I    
Sbjct: 247 KEFASAKMREAVQTVEKMERMENMDKVKEETFAYFEEKLENFEEVAGDIEEVLQAIIKDE 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+++ D++VR D R    +R I  + G++ RTHGS++F RG TQ + + TLG   D Q 
Sbjct: 307 VRSLITDEEVRPDNRKYNEIRPIWCETGMIPRTHGSAIFTRGQTQVMNIATLGALGDVQK 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY 
Sbjct: 367 LDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVIPSQEDFPYA 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GS+S A+VC S+L+L+DAGVPI   VAGIAMGL+K  D  ++LSDI G 
Sbjct: 427 IRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVVVLSDIQGM 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT+ GITA+QMD+KI GI E+I+  AL QA+ GR+HIL EM KV+SE 
Sbjct: 487 EDHLGDMDFKVAGTEHGITAIQMDIKIDGIDEDILRRALAQAREGRMHILGEMRKVISEP 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P++E M I PD+I++VIG GGKVI  I+++TG K++I+  G V IA +  A 
Sbjct: 547 RPELSPYAPKIERMNINPDKIKDVIGPGGKVITKIIDETGVKIDIEQTGEVFIAGTDKAM 606

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A+E+I +I    EV K+Y+G+V ++M+FGAF+     ++GL+H+SQ+S ERV    D
Sbjct: 607 IDRAKELIGNIVAEAEVGKVYRGKVTRIMNFGAFMEILPGKEGLLHVSQISKERVNNVED 666

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  GD + VK+ + D++G+I LS KV+
Sbjct: 667 VLNIGDELEVKVTEIDEKGRINLSRKVL 694


>gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
 gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
          Length = 707

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/705 (44%), Positives = 457/705 (64%), Gaps = 19/705 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+EIE AGR LK+ TG+IARQS GA++  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKTLEIELAGRSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  LI+R+IDR IRP+F + +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKRESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++A+S AL +S +PF GPV G  V YI+G++VLNP  ++ + SL DL V+
Sbjct: 121 DEKNTPDYLGIIASSLALSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSLLDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K +     +  K+C KE I  + ++   
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAILFAHENIKKICAFQEEFVKICGKEKITFEKEEVDP 240

Query: 240 LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSW 286
           +   +S  I+E     L+ +     K  R + +D L+++++  F ++H            
Sbjct: 241 M---ISSFIEEHGHERLQQAVLTLGKKNREEAVDSLEEELLEAFVAKHYPEIPEEELPEE 297

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   + D+   +VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+T
Sbjct: 298 PILAFKKYYHDLMKTLVREAILYKKHRVDGRSTTEIRPLDAQINVLPIPHGSALFTRGET 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+EDEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA 
Sbjct: 358 QSLATATLGTKEDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+  V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL
Sbjct: 418 RALRYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA  
Sbjct: 478 IKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHV 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R  IL  M+  +S S   L    PR++ + IP D+I  +IG  GK I+GI+E+TG+ ++
Sbjct: 538 ARQQILEVMNAAIS-SPADLKPNVPRIQQIMIPKDKIAILIGPAGKNIKGIIEETGSTID 596

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I DDG V I S     +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL
Sbjct: 597 ITDDGKVSIFSKDADVLEHTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGL 656

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +HIS++S ERV+   DV+K GD   VK++  ++ GKI LS K +D
Sbjct: 657 LHISEISKERVSNVEDVLKIGDVFKVKVISMEN-GKIALSKKKLD 700


>gi|327441005|dbj|BAK17370.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris
           StLB046]
          Length = 704

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 306/687 (44%), Positives = 448/687 (65%), Gaps = 10/687 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGRPL +E G++A+Q++GA +  YGET VLAT    +  K   DFFPLTVN++ER YA
Sbjct: 10  EWAGRPLTVEVGQLAKQANGAAMIRYGETAVLATATMSKQPK-ALDFFPLTVNFEERLYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE RP+E  +L SR+IDR IRP+F   ++NE Q I+ VM +D      V 
Sbjct: 69  AGKIPGGFIKREGRPSEAAVLTSRLIDRPIRPMFPDGFRNEVQSILMVMSNDSNCPADVA 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMV 188
           +M  +S +L +S +PF+GP+ G  V YI G++V+NP +++  + ++ L V+G +DAV MV
Sbjct: 129 AMFGSSLSLAISDIPFDGPIAGVHVGYIEGEFVVNPTVEQSAKSTVHLTVAGNKDAVNMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           E  A +++ED++L+AI+FGH E K +I    ++     KE + +      +L+ +++  I
Sbjct: 189 EAGALEVTEDIMLEAIMFGHEEIKKLIAFQEQIVAEVGKEKLEVT---LYELDADLTAAI 245

Query: 249 KE----DLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           K     D+  +    +K +R + I  +K +++ +Y + E       ++ ++ + +    V
Sbjct: 246 KAECEADMNTAIQTVDKQLRQENITAVKTRVIEAYEAQEADEATMKQVNAILDKMVKDEV 305

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R +S++V LL R HGS+LF RG TQA+ + TLG   D Q +
Sbjct: 306 RRLITEDKVRPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALSICTLGALGDVQII 365

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   +M HYNF   + GE  R G+P RREIGHG L  RAI  V+P   +FPY +
Sbjct: 366 DGLGIEESKRWMHHYNFPQFSVGETGRYGSPGRREIGHGALGERAILAVMPTEEEFPYAI 425

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R VSE+ ES+GS+S A++C S++ALM AGVPI  PVAGIAMGLVK G+ + +LSDI G E
Sbjct: 426 RCVSEVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGEHYTVLSDIQGME 485

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  G+TA+QMD+KI G+S +I+  AL QAK GR+HIL  M   +S SR
Sbjct: 486 DHLGDMDFKVAGTAKGVTALQMDIKIDGLSRDILEEALTQAKIGRMHILEHMMSTISASR 545

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             L ++ P++  + I PD+IR+VIG GGKVI  I+++TG K++ + DGT+ IAS+  A I
Sbjct: 546 TSLSQYAPKIVSIKINPDKIRDVIGPGGKVINKIIDETGVKIDTEQDGTIYIASADEAMI 605

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+EMI SI    +V + Y   V ++  FGAF      +DGL+HIS++  ER  +  DV
Sbjct: 606 NRAKEMIESIVREAKVGEYYMATVKRIEKFGAFCEIFPGKDGLLHISEIQEERTKEVEDV 665

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +K GD + VK ++ D +G++ LS KVV
Sbjct: 666 LKLGDELLVKCIEIDKQGRVNLSRKVV 692


>gi|310779081|ref|YP_003967414.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
           DSM 2926]
 gi|309748404|gb|ADO83066.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
           DSM 2926]
          Length = 716

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/714 (44%), Positives = 464/714 (64%), Gaps = 26/714 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+   +E+E  GR L L TG+IARQS GAV+  YG+T++L+TV   +  + G DFFPLT
Sbjct: 1   MFEEKKMEMEIGGRTLSLSTGKIARQSCGAVMIQYGDTILLSTVNRSKEGRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V++ E+ YAVGK PGG+ +RE+RP+ +  L +R+IDR IRP+F + +  +  ++  V  +
Sbjct: 61  VDFLEKYYAVGKFPGGFHKREARPSTDATLTARLIDRPIRPMFPEGFNYDVHIVNTVFSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D +++P  + ++ +SAALMLS +PF GPV G  V     +++LNP   E  +  L+L V+
Sbjct: 121 DGDNTPDYLGIIGSSAALMLSDIPFLGPVAGVVVAMKGEEFILNPTPKELAESPLNLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A+++SE+V+L AI+F H+  K + E   + A++  KE       +F K
Sbjct: 181 GTKDAVNMVEAGASEMSEEVMLKAILFAHDNIKKICEFQEEFARLAGKEKF-----EFVK 235

Query: 240 --LEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE----- 288
             ++E +   I E+    L+ +     K  R   ++DL+ ++++ F+ ++   NE     
Sbjct: 236 PEIDETVQSFIDENGGERLKKAVLAIGKQAREDAVNDLEDELLASFTEKYIQENELEELP 295

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
               GE  S + D+  K VR  ++  K R+DGR ++ +RD+ A++G L   HGS++F RG
Sbjct: 296 GEIEGEFKSYYHDLMKKFVREAIVYNKHRVDGRKTDEIRDLYAEIGTLPLPHGSAMFTRG 355

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQAIV  TLGT++DEQ VD L+      F +HYNF P + GE   M AP RRE+GHG L
Sbjct: 356 ETQAIVTTTLGTKQDEQLVDGLNEEYYKKFYLHYNFPPYSVGEARFMRAPGRRELGHGAL 415

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+  V+P T  FPYT+R+VSEITES+GSSS A++CG SLALM AGVP+   VAGIAM
Sbjct: 416 AERALSYVMPSTDDFPYTVRVVSEITESNGSSSQASICGGSLALMAAGVPVKSHVAGIAM 475

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GLVK+GDD+ +L+DI G EDHLG MDFKVAGT++GITA+QMD+KI GI EN+M +AL+QA
Sbjct: 476 GLVKEGDDYAVLTDIMGLEDHLGDMDFKVAGTEAGITALQMDIKITGIDENVMRIALKQA 535

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              RL I+  M   + E+  +L    PR+  M +P D+I  +IG GGK I+ I+E+TGA 
Sbjct: 536 LDARLQIIGVMKNAI-EAPAELAASAPRIYQMMVPTDKIAALIGPGGKNIKAIIEETGAT 594

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I+DDG V I S+    +E    ++ +     E  +IY+G+VVKV  FGAF+     ++
Sbjct: 595 IDIEDDGKVSIFSNDGETLEKTINLVNNYVKDIEAGEIYQGKVVKVAKFGAFMQILPGKE 654

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GL+H+S+++ ERVA   DV+  GD + VK++  ++ GK+ LS K   Q   KP+
Sbjct: 655 GLLHVSEIAHERVANVDDVLSVGDILEVKVIS-NENGKVSLSRK---QLIAKPV 704


>gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
           ATCC 700633]
 gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
           ATCC 700633]
          Length = 701

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/688 (43%), Positives = 456/688 (66%), Gaps = 8/688 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EW GR L++E G++A+Q++GAVL  YG+TVVL   V  +  KD  DFFPLTVNY+E+ YA
Sbjct: 10  EWGGRLLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKD-TDFFPLTVNYEEKMYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE RP+E+  L +R+IDR IRP+F++ ++NE Q+   VM  D    P + 
Sbjct: 69  AGKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEMA 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M  +S AL +S +PF+GP+ G  V  +NG+YV+NP  ++ + S ++L V+GT  A+ MV
Sbjct: 129 AMFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQAELSDIELSVAGTATAINMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQM 247
           E  A ++SE+ +L A++FGH E K ++    ++ +   KE + +    F  ++E+++  +
Sbjct: 189 ESSAKEVSEEDMLGALLFGHEEIKKLVAFQQQIVQEIGKEKMEVTLLSFDPEIEKQVKDL 248

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEG---EIVSVFEDIQAKV 302
             + +  +    EK  R + I+ +K+  + +F +  E +    G   ++  + ++++   
Sbjct: 249 FSQAMINAIQTEEKLAREENIEKVKETALEHFEAVLEDNDEKAGLLKQVSQLVDNLEKDE 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++ ++KVR DGR  + +R +S+++ LL R HGS LF RG TQA+   TL    + Q 
Sbjct: 309 VRRLITEEKVRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQV 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   F+ HYNF   + G V R G+P RREIGHG L  RA+  V+P    FPYT
Sbjct: 369 IDGLGIEEGKRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVIPTPEDFPYT 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSS A++C  +LALM AGVPI  PVAGIAMGL+ DG ++ +L+DI G 
Sbjct: 429 IRLVSEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNYTVLTDIQGL 488

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +GITA+QMD+KI GI+E I+  AL QAK+ R  IL E++  ++E 
Sbjct: 489 EDHLGDMDFKVAGTTTGITALQMDIKIQGITEQILREALTQAKKARFEILEELTSTIAEP 548

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P++E+++I PD+I+ VIG GG+ I  I+++TG K++ID +G V IAS+  A 
Sbjct: 549 RKELSPYAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVKIDIDQEGHVSIASTDAAM 608

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A+E+I  +T   EV ++Y+G V ++  FGAFV     +DGLVHIS+L+ ERVAK  D
Sbjct: 609 IQRAKEIIEDLTREIEVGQVYEGTVRRIEKFGAFVEIAKGKDGLVHISELAHERVAKVED 668

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  GD V VK+ + D +G+I LS K +
Sbjct: 669 VLAIGDKVKVKVTEIDGQGRINLSRKAL 696


>gi|257885733|ref|ZP_05665386.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,501]
 gi|257821589|gb|EEV48719.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,501]
          Length = 708

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/702 (42%), Positives = 457/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-TDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE  +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEKDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++ + +   +      E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|330836568|ref|YP_004411209.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
           DSM 17374]
 gi|329748471|gb|AEC01827.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
           DSM 17374]
          Length = 705

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/698 (44%), Positives = 461/698 (66%), Gaps = 17/698 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V ++     L  ETG+IA+Q++G++ A+Y  + ++ATV    +  +  D+ PL+
Sbjct: 1   MFDVKKVSVKIGDGELVFETGKIAKQANGSIYASYEGSAIIATVCCGAAPSEPLDYVPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y E+ YA GKIPGG+L+RE+RP + EIL+SR+IDR +RPLF K +  E Q++  V+  
Sbjct: 61  VEYNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQIVPTVVSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D  + P ++++ AASAA+M+S +PF GP+   ++  ++G Y++NP   +  Q  LD+ VS
Sbjct: 121 DQANQPDIIAINAASAAVMISDIPFAGPIGAVRIALVDGDYIINPTFQQTAQAQLDIVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDF 237
           GT+D + MVE  A ++SE+V+L AI         + +A  +L K+  KE  PI+  ++D 
Sbjct: 181 GTRDGITMVEGGAKEVSEEVMLKAIAAAQPVITALCDAQIELQKIVGKEKLPIIQINRDL 240

Query: 238 SKL---EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIV 292
           S L         ++ E      F+  K  R   +D +K  + + F+      S   GE+ 
Sbjct: 241 SWLGPIRAAAYPLVAE----KSFVKGKSNRYDALDAVKSDIKAQFAEVIGEDSKRSGEVD 296

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S+FED++ +++R  +LD  VR DGR  + +R I+ +VGLL  THGS+LF RG+TQ++ V 
Sbjct: 297 SLFEDLEYEILRKSILDNGVRTDGRKVDDIRPITCEVGLLPMTHGSALFTRGETQSLAVT 356

Query: 353 TLGTREDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  DEQ  D++ G +  + FM+HYNF P + GE  R+ +  RREIGHG LA+RA+  
Sbjct: 357 TLGTASDEQMFDTIDGEKSFSSFMLHYNFPPYSVGETGRL-STGRREIGHGHLAQRALQA 415

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           ++P   +FPYT+R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI KPVAGIAMGL+ +G+
Sbjct: 416 IVPPKEKFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGE 475

Query: 472 DF---IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           D+   ++LSDI G+EDHLG MDFKVAGT+ GITA QMD+KI G++  IM  AL QAKRGR
Sbjct: 476 DYARYVVLSDILGEEDHLGDMDFKVAGTEDGITAFQMDIKIAGVTPEIMSKALDQAKRGR 535

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL+ M K L   R ++ E+ P++  + +  D+I  +IG GGK I+ I  Q+GA++NID
Sbjct: 536 LHILDVMGKTLKTPRAEVSEYAPKILTIKVDEDKIGAIIGTGGKTIKSIALQSGAEINID 595

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDGTV I   +    + A+E+++SI + PEV +IY+G V ++MDFGAF+     ++GL H
Sbjct: 596 DDGTVTIYGRNSKSAQTAKELVQSIVEEPEVGRIYQGTVKRIMDFGAFIEILPGKEGLCH 655

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           IS+L+  RV    DV+  G +V VKL++ D  G++ LS
Sbjct: 656 ISKLAKTRVNNVGDVLSLGQSVPVKLIEVDRMGRLNLS 693


>gi|225630576|ref|YP_002727367.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
 gi|254782747|sp|C0R3T4|PNP_WOLWR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225592557|gb|ACN95576.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
          Length = 757

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 322/699 (46%), Positives = 454/699 (64%), Gaps = 8/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GR L LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKK-EENVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E    SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  K D   +     K  R + ++ +++ +++    + +  +E  I    ++ 
Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  G+TA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE    + +  PR+    I  D+I   IG  GK IR + E++ AK+ I DDG V + ++
Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596

Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  E E A+  MI SIT++ E   I   +VV++      + F   R G +HIS+++ E +
Sbjct: 597 SGTEAEIAKSMMIDSITEL-EQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHI 655

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                V+K+ DT    ++DF+  G  KLS + VDQ TG+
Sbjct: 656 DSIESVLKQDDTFKALVIDFEKGGCPKLSRRRVDQETGE 694


>gi|42520733|ref|NP_966648.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|81652354|sp|Q73GN4|PNP_WOLPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|42410473|gb|AAS14582.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 757

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 322/699 (46%), Positives = 454/699 (64%), Gaps = 8/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GR L LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRALSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDE-DQGSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E    SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  K D   +     K  R + ++ +++ +++    + +  +E  I    ++ 
Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  G+TA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE    + +  PR+    I  D+I   IG  GK IR + E++ AK+ I DDG V + ++
Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596

Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  E E A+  MI SIT++ E   I   +VV++      + F   R G +HIS+++ E +
Sbjct: 597 SGTEAEIAKSMMIDSITEL-EQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHI 655

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                V+K+ DT    ++DF+  G  KLS + VDQ TG+
Sbjct: 656 DSIESVLKQDDTFKALVIDFEKGGCPKLSRRRVDQETGE 694


>gi|73662800|ref|YP_301581.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|117940130|sp|Q49X62|PNP_STAS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72495315|dbj|BAE18636.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 697

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 313/688 (45%), Positives = 459/688 (66%), Gaps = 9/688 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWA R L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPL VNY+E+ YA
Sbjct: 11  EWANRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLMVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP++   L +R+IDR IRPLF K YK + Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G +V YI+G+YV+NP + + + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVKVGYIDGEYVINPTVAQKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH+E + ++    ++       K+  V   KD   L E++ Q
Sbjct: 190 EAGASEITESEMLEAIFFGHSEIQRLVNFQQEIVDHIQPKKKAFVPVEKD-EVLVEKVKQ 248

Query: 247 MIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKV 302
           + +E+ L+ +    +K  R   +D LK+K+ + F  E  + NE    E+ S+  D+  + 
Sbjct: 249 LTQENGLKDAVLTFDKQQRDINLDALKEKVAAEFIDEEDADNEVLIKEVNSILNDLVKEE 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++ ++K+R DGR ++ +R + ++VG+L R HGS LF RG TQA+ V+TLG+  + Q 
Sbjct: 309 VRRLIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQI 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   ++  FM HYNF   + GE   + +P RREIGHG L  RA+  ++P    FPYT
Sbjct: 369 LDGLGEEEQKRFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIPDLKDFPYT 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G 
Sbjct: 429 VRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTILTDIQGM 488

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT  GITA+QMD+KI G+++ I+  AL QA+ GRL IL+ M + +  S
Sbjct: 489 EDALGDMDFKVAGTAEGITAIQMDIKIDGLTKEIIKEALDQAREGRLAILDHMLQTIDTS 548

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  F P+V  M I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I +     
Sbjct: 549 RSELSAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIGAVDKDA 608

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I  AR +I  IT   EV ++Y+G+V ++  +GAFV     +D LVHISQ++ ER+ K  D
Sbjct: 609 IARARSIIEDITREAEVGQVYEGKVKRIEKYGAFVELFPGKDALVHISQIANERIDKVED 668

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+K GD   +K+ + D +G++  S K +
Sbjct: 669 VLKVGDIFKIKVTEIDKQGRVNASHKAL 696


>gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 712

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/692 (44%), Positives = 460/692 (66%), Gaps = 18/692 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  V +E  GRPL+ +TG++A+Q+DGAV+ + G+T+VL T V     ++G DFFPL V Y
Sbjct: 3   ISEVAVEVGGRPLRFQTGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG+++RE +PT+ E+L SR+IDRSIRP+F K ++N+ QV+  V+  D E
Sbjct: 63  RERAYAAGKIPGGFVKREGKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVVAFVISADQE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P V+++  ASAAL +S +PFE PV   +V  +NG+ V+NP  ++ Q + ++L VSGT+
Sbjct: 123 NDPAVLAINGASAALHISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNADINLVVSGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDF 237
           DAV+MVE  A ++ E+ +LDAI   H E K  I A  +L  +  KE        +D +  
Sbjct: 183 DAVVMVEGGAKEVPEEEILDAIELAHEEIKKSIRAQQELRDLAGKEKYEFIAPSLDEETK 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHSSWNEGEIVSV 294
           +K+E+ + + I+  + +S    +K+ R +++ +L++ M   ++    E S   E      
Sbjct: 243 AKIEKWVFERIEPVITIS----DKHERREKLRELRELMFIELNIPEEEQSLAKEA----- 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F + + K VR ++L++ +R+DGR    +R I+ +VGLL R HGS+LF RG TQA+V  TL
Sbjct: 294 FAEAEKKFVRQLVLERGIRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTL 353

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT E+ Q V+ L   ++  FM+HYNF P   GEV+ +  P RREIGHG LA RA+ PV+P
Sbjct: 354 GTPEEYQLVEGLMPEEQKRFMLHYNFPPFCVGEVAPLRGPGRREIGHGALAERALAPVIP 413

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +  +FPY +R+VS+I ES+GSSSMATVCG SL+LMDAGVPI   VAGIAMGL+ +GD F+
Sbjct: 414 EEDEFPYVIRVVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLILEGDKFV 473

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAGT  G+TA+QMD+K+ GIS +I++ AL+QA+ GR++IL++
Sbjct: 474 VLSDILGDEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISRDILMTALKQAREGRMYILDK 533

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M  V+S  R  +  + PR+    I P++ R++IG  GK I+ I+++ G K+ I +DGTV 
Sbjct: 534 MDAVISSPREGISPYAPRIVSTKIDPEKTRDLIGPSGKTIKAIIDKAGVKITIKEDGTVL 593

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++ S      A +MI  +T   E+   Y G+V +V ++GAFV     + GL+HIS+L  
Sbjct: 594 VSAPSEDAAAQAIKMIEDVTKDLEIGNTYLGKVTRVENYGAFVELAPGKIGLIHISKLPP 653

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           E      + +K  D + VK+++FD  G+ KLS
Sbjct: 654 EMRENIFESIKVSDIIPVKIIEFDQMGRPKLS 685


>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
 gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
          Length = 689

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/683 (44%), Positives = 452/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P 
Sbjct: 64  YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186
           +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP +   ++  L++ V+GT+DA+L
Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD   ++ + + 
Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPVEISDAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V+T+    ++Q +D 
Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR+
Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I PD+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G++ LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685


>gi|313891639|ref|ZP_07825246.1| polyribonucleotide nucleotidyltransferase [Dialister
           microaerophilus UPII 345-E]
 gi|313119917|gb|EFR43102.1| polyribonucleotide nucleotidyltransferase [Dialister
           microaerophilus UPII 345-E]
          Length = 697

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/697 (42%), Positives = 469/697 (67%), Gaps = 11/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T ++E AGRPL +ETG++A+Q+ G+VL  YG+TVVL    + +  ++G DFFPLT
Sbjct: 1   MFE--TFQMELAGRPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGK+PGG+LRRE RP  + +L +R+IDR IRPLF K  +++  V+  V+  
Sbjct: 59  VDYEEKMYSVGKMPGGFLRREGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D +++P +  ++ ASA++ +S +P++GPV G +V  ++G++V+NP  ++ ++ ++++ V+
Sbjct: 119 DYDNAPELCGLLGASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERSTMNITVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G++ A+LMVE  A + SE+ VLDAI++ H   K ++E   K+ +   K+        F++
Sbjct: 179 GSETAILMVEGGAKEASEEEVLDAIMYAHTVIKQLVEFQKKIIEKVGKQK---KELVFAE 235

Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           + EE+ + I E    +LR + F P+K  R   +++++K+  ++F   +   NE ++++  
Sbjct: 236 IPEEIEKAIYEYAENNLREAIFNPDKLTREAHMEEVRKEAENHFKEIYPD-NESDVITCL 294

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +   +VR ++   K+R DGR  + +R I+ +VG++ RTHGS+LF RG TQA+ + TL 
Sbjct: 295 DHLTKSIVRKMISVDKIRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLA 354

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L+      ++  YNF     GE      P RREIGHG LA RA+ PV+P 
Sbjct: 355 PMNETQIIDDLTLVNEKRYIHQYNFPSYCVGETKSSRGPGRREIGHGALAERALEPVIPS 414

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSEI ES+GSSS A+VCGS+++LM+AGVPI  PVAGIAMGLV +G+ F I
Sbjct: 415 VDEFPYAIRVVSEILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGEHFTI 474

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GITA+QMD+KI G+S  I++ AL+QA +GR+ IL ++
Sbjct: 475 LTDIQGMEDALGDMDFKVAGTAKGITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKI 534

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++ +S+    L  + P++  + IP D+IR+VIG GGK I  I+ +TG K+++++DG V I
Sbjct: 535 AECISKPAEHLSPYAPKIITLTIPVDKIRDVIGTGGKTINKIITETGVKMDVEEDGRVYI 594

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS      + A++M+ S+T   +  ++Y G+V ++M FG FV     ++G+VHISQL+ +
Sbjct: 595 ASVDEEAAQKAKKMVESLTHEVKPGEVYLGKVTRLMKFGVFVEILPGQEGMVHISQLALK 654

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           RV K  DVV EGD + VK+++ DD+G+I LS K + Q
Sbjct: 655 RVEKVEDVVHEGDEIMVKVMEIDDKGRINLSRKALLQ 691


>gi|259047075|ref|ZP_05737476.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
           ATCC 49175]
 gi|259036125|gb|EEW37380.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
           ATCC 49175]
          Length = 703

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/687 (43%), Positives = 451/687 (65%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           W GR L++E G++A+Q++GAVL  YG+TVVL   V  +  KD  DFFPLTVNY+E+ YA 
Sbjct: 11  WGGRQLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKD-TDFFPLTVNYEEKMYAA 69

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GKIPGG+++RE RP+E+  L +R+IDR IRP+F++ ++NE Q+   VM  D    P + +
Sbjct: 70  GKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEMAA 129

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G  V  +NG+YV+NP  ++ D   ++L V+GT  A+ MVE
Sbjct: 130 MFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQKDNSDIELSVAGTATAINMVE 189

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMI 248
             A +++E+ +L A++FGH E K ++    ++ +   KE + +    F   +E ++  + 
Sbjct: 190 SSAKEVNEEDMLGALLFGHEEIKKLVAFQEEIVREVGKEKMEVTLLSFDPAIEAQVKDLF 249

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEG---EIVSVFEDIQAKVV 303
            + +  +    EK  R   I+ +K+  + +F +  E +    G   ++  + ++++   V
Sbjct: 250 SQAMVHAIQTQEKLAREANIEKVKETAIEHFEAVLEENDEKAGLLKQVSQLVDNLEKDEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ ++KVR DGR  + +R +S+++ LL R HGS LF RG TQA+   TL    + Q +
Sbjct: 310 RRLITEEKVRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   F+ HYNF   + G V R G+P RREIGHG L  RA+  V+P    FPYT+
Sbjct: 370 DGLGIEEGKRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVIPSPEDFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+ ES+GSSS A++C  +LALM AGVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 430 RLVSEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLE 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R  IL E++  ++E R
Sbjct: 490 DHLGDMDFKVAGTKDGITALQMDIKIQGITEQILREALTQAKKARFEILEELTSTIAEPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + P++E+++I PD+I+ VIG GG+ I  I+++TG K++ID +G V IAS+  A I
Sbjct: 550 KELSPYAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVKIDIDQEGHVSIASTDAAMI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A+E+I  +T   EV ++Y+G V ++  FGAFV     +DGLVHIS+L+ ERV K  DV
Sbjct: 610 QRAKEIIEDLTREIEVGQVYEGTVRRIEKFGAFVEIAKGKDGLVHISELAHERVGKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  GD V VK+++ D +G+I LS KV+
Sbjct: 670 LALGDKVTVKVIEIDGQGRINLSRKVL 696


>gi|295397816|ref|ZP_06807881.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294973951|gb|EFG49713.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 702

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 306/701 (43%), Positives = 455/701 (64%), Gaps = 11/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    ++ WAGRPL +E G++A+Q++ AVL  YG+TVVL  VV  +  K GQDFFPL 
Sbjct: 1   MEEKQVFKMNWAGRPLSIEYGQVAKQANAAVLVRYGDTVVLTAVVGAKEAKPGQDFFPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGKIPGGY++RE RP+E+  L +R+IDR IRP+F + + NE QVI  V+  
Sbjct: 61  VNYEEKMYSVGKIPGGYIKREGRPSEHATLTARLIDRPIRPMFDEGFTNEVQVINTVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + SP + +M  +SAAL +S +PF+GP+ G  V  +NG +V+NP +++  Q  L+L V+
Sbjct: 121 DPDCSPEMAAMFGSSAALTISDIPFDGPIAGVNVGRVNGDFVINPTVEQQAQSDLELIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237
           G++DA+ MVE  A +LSE  +L+A++FGH   + +     ++ +   +E   + +++ D 
Sbjct: 181 GSKDAINMVESSAAELSETEMLEALMFGHTSIRELCYFQDEIREKIGQEKMDVQLNTPD- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIV 292
           + L  E++    + +  +    +K  R + I+ +K  ++ ++S  ++   +      ++ 
Sbjct: 240 NVLVAEVTAQYNQQMVEAIQTFDKLEREENIEAVKAAIIDHYSELYAEHEDVVTLMDQVR 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +   ++ K VR ++ D KVR DGR  + +R ++++VGLL RTHGS LF RG TQA+ V 
Sbjct: 300 QIANQLEYKEVRRLITDDKVRPDGRKIDEIRPLASEVGLLPRTHGSGLFTRGQTQALSVA 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TL    +EQ +D L+G     FM HYNF   + G   R G+P RREIGHG L  RA++ V
Sbjct: 360 TLAPLSEEQRIDGLAGDVTQRFMHHYNFPQYSVGSTGRYGSPGRREIGHGALGYRALNEV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           LP    FPY +R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGL+ D D 
Sbjct: 420 LPSEEDFPYAIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDEDE 479

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ +L+DI G EDHLG MDFKVAGT++GITA+QMD+KI GI+E I+  AL QA + R+ 
Sbjct: 480 ENYTVLTDIQGLEDHLGDMDFKVAGTENGITALQMDIKIKGITEQILREALDQAHKARVE 539

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  ++  +   R +L  + P++E M I PD I+ VIG GG  I  I+++TG K++ID +
Sbjct: 540 ILGHLATAIDAPRAELSPYAPKIEQMQIDPDDIKVVIGKGGDTINKIIDETGVKIDIDQE 599

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V IAS + A I+ A+E+I  +T   +  ++Y G V ++  FGAFV     +DGLVHIS
Sbjct: 600 GGVNIASDNAAMIKRAKEIIAELTLKVQAGEVYVGTVKRIEKFGAFVEIAKGKDGLVHIS 659

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           QL  ER     DVV   + V VK+ + D+RG+I L+MK +D
Sbjct: 660 QLQEERTNNVEDVVSMDEKVRVKVTEIDNRGRINLTMKGLD 700


>gi|326803908|ref|YP_004321726.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651013|gb|AEA01196.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 706

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/700 (43%), Positives = 454/700 (64%), Gaps = 10/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    ++ WAGRPL++E G++A+Q++ A L  YG+TVVL  VV  +  K+GQDFFPLT
Sbjct: 1   MSEKQVFKMNWAGRPLQIEVGQLAKQANAAALVRYGDTVVLTAVVGAKEAKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YA GKIPGG+++RE RPTE+  L +R+IDR IRP+F + +KNE QVI  VM  
Sbjct: 61  VNYEEKQYAAGKIPGGFIKREGRPTEHATLTARLIDRPIRPMFPEGFKNEVQVINTVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + SP + +M+ +S AL +S +PF+GP+ G  V  ++G  V+NP LD+  Q  L+L V+
Sbjct: 121 DNDCSPEMAAMLGSSVALTISDIPFDGPIAGVNVGRVDGNLVINPTLDQQAQSDLELTVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GTQ A+ MVE  A +LSE+ +L+A++FGH   K +     ++ +   +E +  +++ F  
Sbjct: 181 GTQTAINMVESSAQELSEEEMLEALMFGHANIKELCYFQEEIRQAVGQEKMPFEAEAFVP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
           + E E+     + +  +  I +K  R + +  +K +M+ ++ S     E       +IV+
Sbjct: 241 ETEAEVYTRYHQKMVDAIQIFDKLEREEGVQAVKDEMIEFYDSQFLDDEDFVAKHNQIVA 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + + ++   VR ++ + KVR DGR  + +R +S++VGLL R HGS LF RG TQ +   T
Sbjct: 301 LADKLEYDEVRRLITEDKVRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQVLSACT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D +S      F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 361 LAPLSEYQPLDGISPETERHFIHHYNFPQYSVGSTGRYGSPGRREIGHGELGHRALQRVI 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGL+ D +D 
Sbjct: 421 PSQEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDQEDN 480

Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E+I+  +L QAK  R+ 
Sbjct: 481 NKYTILTDIQGLEDHLGDMDFKVAGTRQGITALQMDIKIKGITEDILRESLAQAKVARMQ 540

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +L+ +   L   R  L  + P+++++ I P++I  VIG GG+ I  I+E TG K++IDDD
Sbjct: 541 LLDHLQGTLDAPRDHLSPYAPKIKMIQIKPEKIGEVIGKGGETIDKIIEATGVKIDIDDD 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V I+SS    I+ A E+I  +T   EV +++ G V ++  FGAFV     ++G+VHIS
Sbjct: 601 GQVSISSSDENMIDKAIEIIEELTLEIEVGQVFTGTVTRIEKFGAFVQLTPKQNGMVHIS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +L  +R  K  DVV+ GD V VK+++ D+RG+I LSMK +
Sbjct: 661 ELQHKRTNKVEDVVQIGDQVKVKVIEVDNRGRINLSMKAL 700


>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
 gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
          Length = 689

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/683 (44%), Positives = 452/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRMLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P 
Sbjct: 64  YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP   + ++  L++ V+GT+DA+L
Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD  +++ + + 
Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D 
Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR+
Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I PD+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G++ LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685


>gi|323144053|ref|ZP_08078697.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
           YIT 12066]
 gi|322416166|gb|EFY06856.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
           YIT 12066]
          Length = 720

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 333/702 (47%), Positives = 461/702 (65%), Gaps = 25/702 (3%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQ 64
           T   ++    + LETG I RQ+D AV+A+  +T V ATVV +R  + +G+DFFPLTVNYQ
Sbjct: 7   TRTFKYGRHTITLETGAIGRQADSAVMASMDDTTVFATVVCNRREQVEGRDFFPLTVNYQ 66

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER+YAVG+IP  + RRE R +E E LISR+IDR +RPLF   + NE QV++ VM  + E 
Sbjct: 67  ERSYAVGRIPVSFFRREGRASEGETLISRLIDRPLRPLFPDGFVNEVQVVVTVMSANPEI 126

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
              ++S++AASAAL  SGLP+ GP+  A+V YINGQYVLNP   E + S LDL V+G+  
Sbjct: 127 PTDIISIIAASAALSTSGLPWNGPLGAARVGYINGQYVLNPLTSETEESDLDLVVAGSDK 186

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--------AKEPIVIDSK 235
           AV+MVE EA  L EDV+L A+++GH + + VI  I + AK          A EP   D +
Sbjct: 187 AVVMVESEAKILPEDVMLGAVMYGHEQQQVVINEIKEFAKEVNRPVWDWKAPEP---DYE 243

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVS 293
             + ++ + ++ + E  R    I +K  R   +  ++ + +    ++   W E   EI  
Sbjct: 244 LINAVKADAAEKVGEAFR----IVDKLERQNTLSTIEAETIEKVKAQKEEWAEKDQEIAK 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +F D++  +VR  +L  + R+DGR    +R I+   G+L R HGS+LF RG+TQAI   T
Sbjct: 300 IFFDLERDIVRERILSGEKRIDGRTLRMIRPITVASGILPRVHGSALFTRGETQAIATCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  D Q  + +SGT+ + F++HYNF P   GE   +G+P RREIGHGRLA+RA+  VL
Sbjct: 360 LGSERDAQTFEDMSGTRSDRFILHYNFPPYCVGETGLIGSPKRREIGHGRLAKRALRAVL 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+VSEITES+GSSSMA+VCG SLAL DAGVP    VAGIAMGLVK+GD  
Sbjct: 420 PDMERFPYTIRVVSEITESNGSSSMASVCGGSLALFDAGVPCKAAVAGIAMGLVKEGDRV 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+K  GI+  IM  AL  A   RLH+L 
Sbjct: 480 AVLTDIMGDEDHLGDMDFKVAGTTEGVTALQMDIKTDGITREIMQQALTDAHAARLHLLK 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M + L   R  L  + PR+  + +PPD+++ +IG GG  IR I   T   ++I+DDGTV
Sbjct: 540 IMGRALPNPRQNLSPYAPRIVTIQVPPDKVKEIIGKGGFNIRAIQTATNTSIDIEDDGTV 599

Query: 594 KIASSSLAEIEAAREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           +I++++ A   AA ++I  I D+    EV +IY+G+VV++ DFGAFV+    RDGLVHIS
Sbjct: 600 RISANTAA---AADQVIARINDLLVEVEVGRIYEGKVVRITDFGAFVNILPGRDGLVHIS 656

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           Q+  ERV   +D ++ GD V VK+LD D+ G+I+LS+K V++
Sbjct: 657 QIVDERVDNVNDYLRVGDIVKVKVLDLDNTGRIRLSIKAVNE 698


>gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
           35580]
 gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
           35580]
          Length = 703

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/682 (43%), Positives = 457/682 (67%), Gaps = 20/682 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++GA+ A YG T VLATV    +  +G D+ P+TV+Y E+ YA GKIPG
Sbjct: 19  LILETGHLAKQANGAIYAQYGGTAVLATVCASSTAVEGLDYVPVTVDYNEKYYAAGKIPG 78

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RP + EIL+SR+IDR +RPLF K +  E Q++   +  D+ + P +++++A+S
Sbjct: 79  GFIKREGRPKDKEILVSRLIDRPMRPLFEKAFGREIQIVPTCISSDMINPPDILAVIASS 138

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AA+++S +PF GPV GA+V Y++G++V+NP   + ++  +++ V+GT + + MVE  A++
Sbjct: 139 AAVVISDIPFNGPVAGARVAYLDGEFVINPTFSQIEKADMEIVVAGTAEGITMVEGGAHE 198

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-------VIDSKD--FSKLEEEMS 245
           +SE+++L A+   H   K +    ++L   C KE +        + +KD  ++K   E+S
Sbjct: 199 VSEEIMLKALEKAHEFIKAMCALQNELRAACGKEKLPLAPVNATLANKDAIYAKAYPELS 258

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI-VSVFEDIQAKVVR 304
           + +        +   K  R +  D ++K +   ++ + +   + ++  ++F+D++  ++R
Sbjct: 259 KAL--------YTKGKVERREACDAIRKALAEEYAEQLADETQAKLFAALFDDMEYHILR 310

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +L+K +R+DGR  E +R I+ ++G+L R HGS++F RG+TQ++ VVTLGT  DEQ  D
Sbjct: 311 ENILEKGLRVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYD 370

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            + G +R +F++HYNF P + GEV R+G   RREIGHG LA R++ P++P    FPYT+R
Sbjct: 371 DIEGDRRENFILHYNFPPYSVGEVGRLGT-GRREIGHGHLAHRSLMPMIPSREAFPYTIR 429

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEI ES+GSSSMATVCG +L+L+ AGVP+ KPVAGIAMGL+ DG  F +LSDI G+ED
Sbjct: 430 VVSEILESNGSSSMATVCGGTLSLLHAGVPMKKPVAGIAMGLITDGSRFAVLSDILGEED 489

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  GIT  QMD+KI G+S  IM  AL+QAK+GRLHIL  M++ +S+   
Sbjct: 490 HLGDMDFKVAGTAEGITGFQMDIKIAGVSAEIMKKALEQAKKGRLHILGIMNQTISKPSE 549

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+E + IP D+I  +IG GGK+I+ + EQ    +N ++DGTV I     +   
Sbjct: 550 QVSKYAPRIETLKIPVDKIGALIGPGGKIIKALSEQYHVTINTENDGTVTIYGRDSSSAI 609

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+  +  I + PEV +IY+G V  + DFGAF+     ++GL HIS+LS  R+ K +DV+
Sbjct: 610 GAKAAVIGIVEDPEVGRIYEGTVKCIKDFGAFIEILPGKEGLCHISKLSRNRIEKVTDVL 669

Query: 665 KEGDTVWVKLLDFDDRGKIKLS 686
           +EG  V VKLL+ D  G++ LS
Sbjct: 670 QEGQKVPVKLLEIDKLGRLNLS 691


>gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 732

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 325/709 (45%), Positives = 461/709 (65%), Gaps = 25/709 (3%)

Query: 6   TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNY 63
           T EI+   G+ + +ETGR+A+Q+DGA +   G+T+V+ATVV  +      QDFFPL V Y
Sbjct: 4   TKEIDLGQGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSPNQDFFPLQVEY 63

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE+RP+E EIL +R+IDR++RPLF   Y  ETQVIINV+  D +
Sbjct: 64  REKYYAAGKFPGGFFKREARPSEKEILSARLIDRALRPLFPTGYYYETQVIINVISSDQQ 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +   V+  +AASAA+M+S +PFE  +   +V  +NGQ+++NP +DE +GS +D+ + GT 
Sbjct: 124 NDADVLGGLAASAAIMVSDIPFENAMSEVRVGRVNGQFIINPTIDELEGSDIDISIGGTA 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237
             + M+E E  ++SE  +L+AI FGH   K +      +    AK      P+ + S+  
Sbjct: 184 GTICMLEGEMKEISEAEMLEAIRFGHEAIKKLCALQDSVQAAVAKAKRPFAPLQVPSELG 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI-DDLKKKMVSYFSSEHSS----------- 285
           + + +     +KE    +    E+  R K+I  +  K  V +FS+  SS           
Sbjct: 244 AFISDACKARLKELAYTALAKEERAERTKEIYGETLKSAVEHFSAAFSSEDLAADPSKAL 303

Query: 286 -WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             NE  I      ++  V+R ++LD   R+DGR  + VR IS  +G++ R HGS+LF RG
Sbjct: 304 CTNEHIIEEEIHSVEKDVMRRMILDDAKRLDGRTLDQVRPISIDLGVIPRAHGSALFTRG 363

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQA+V VTLGT++D Q VD+L+ +    FM+HYNF P + GEV R+G   RREIGHG L
Sbjct: 364 ETQALVAVTLGTKKDAQSVDTLTNSADKRFMLHYNFPPFSVGEVGRLGTTGRREIGHGNL 423

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RAI  V P   +FPYT+RIVSEI ES+GSSSMA+VCG +LALMD GVP+ K V+GIAM
Sbjct: 424 AERAIRMVAPTEQEFPYTIRIVSEILESNGSSSMASVCGGTLALMDGGVPLKKAVSGIAM 483

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GL+K+G ++ +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+QA
Sbjct: 484 GLIKEGSEYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALEQA 543

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +RGR HIL++M + +  SR  L  + PR+  + +P + I  +IG GG+ IR I E+TGA+
Sbjct: 544 RRGRFHILDKMEEAIPASREDLAHYAPRLTAIQVPVESIGLIIGKGGETIRSITEETGAE 603

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGAR 643
           +NI+DDGTV IA SS    + A E+I+++   PEV  +Y G+V  + D  GAFV F    
Sbjct: 604 INIEDDGTVTIACSSNEGTKGAVEIIKALIAKPEVGTVYIGKVRDIRDELGAFVEFIPKT 663

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689
           DGLVHIS+++ ERVAK SD +K G+ V VKL+D   D R GK + ++ +
Sbjct: 664 DGLVHISEIANERVAKVSDHLKVGERVKVKLVDIRKDPRTGKTRFALSI 712


>gi|307292085|ref|ZP_07571952.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0411]
 gi|306496867|gb|EFM66417.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0411]
          Length = 704

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 303/697 (43%), Positives = 457/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  ++ KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKAAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D     +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    DVVK GD V VK+ + D +G++ +S K +
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKAL 696


>gi|332298592|ref|YP_004440514.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
           DSM 12168]
 gi|332181695|gb|AEE17383.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
           DSM 12168]
          Length = 699

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 314/704 (44%), Positives = 466/704 (66%), Gaps = 21/704 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  V  +   + L LETGR+A+Q++GAV A +G + V+AT     + ++G DF P+TV+Y
Sbjct: 2   VQRVTYKIGDQELILETGRLAKQANGAVYAQFGGSAVIATACASGTAQEGLDFVPVTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF   +  E Q++   +  D  
Sbjct: 62  NEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEVAFGREIQIVPTCVSSDQI 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P ++++VA+SAA+++S +PF GP+ G +V Y++G YVLNP   + ++  L++ V+GT 
Sbjct: 122 NPPDMLAVVASSAAVVISDIPFNGPIAGVRVAYVDGDYVLNPTYAQIEKAELEIVVAGTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-------IVIDSK 235
           D   MVE  AN++SEDV+L A+         +    ++L K+  KE        + +++K
Sbjct: 182 DGFTMVEGGANEVSEDVMLGALAKAQEFITAMCGLQNELRKLAGKEKLPLCPVTVALENK 241

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SV 294
           D + L E M +M       +CF+  K++R + I  +K  + + ++++  +  + ++  ++
Sbjct: 242 D-AMLAEAMPRM-----EEACFVKGKHLRHEAIAAVKADLSAKYAAQLENETQMKLFNAL 295

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           FED++  ++R  +LDK VR+DGR +E +R IS ++ +L R HGS++F RG+TQ++ V TL
Sbjct: 296 FEDMEYNILRKSILDKGVRVDGRGTEDIRPISCEIDVLPRPHGSAIFTRGETQSLAVATL 355

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  DEQ  D + G +R  F++HYNF P + GEV RMG   RREIGHG LARR++ P++P
Sbjct: 356 GTALDEQVYDDIDGDRREHFILHYNFPPYSVGEVGRMGT-GRREIGHGNLARRSLEPMVP 414

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF- 473
               FPYT+R+VSEI ES+GSSSMA+VCG +L ++ AGVP+ KPVAGIAMGL+ +GD + 
Sbjct: 415 SREAFPYTIRVVSEIMESNGSSSMASVCGGTLCMLAAGVPMKKPVAGIAMGLITEGDKYE 474

Query: 474 --IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              ILSDI G+EDHLG MDFKVAGT  GIT  QMD+KI G++  IM  AL QAKRGRLHI
Sbjct: 475 KYAILSDILGEEDHLGDMDFKVAGTADGITGFQMDIKIAGVTTEIMQKALAQAKRGRLHI 534

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L  M++ +S+   ++ E+ P++E M I  D+I  +IG GGK ++GI    G  +N DDDG
Sbjct: 535 LGIMNQTISKPAAKISEYAPKIETMKIDVDKIGALIGPGGKTVKGISALYGVTINTDDDG 594

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV I   +    +AA+  +++I + PEV  +Y+G V ++MDFGAFV     ++GL HIS+
Sbjct: 595 TVTIYGKNGKSTDAAKTAVKAIVEDPEVGTVYQGTVKRIMDFGAFVEILPGKEGLCHISK 654

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM--KVVDQN 693
           LS +RV K +DVV EG  + VKLL+ D  G++ LS    V DQN
Sbjct: 655 LSRKRVEKVTDVVSEGQQIPVKLLEIDKMGRLNLSYIDAVEDQN 698


>gi|303248250|ref|ZP_07334513.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           fructosovorans JJ]
 gi|302490388|gb|EFL50299.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           fructosovorans JJ]
          Length = 751

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 316/706 (44%), Positives = 465/706 (65%), Gaps = 14/706 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           FD   ++    G  + LETGR+A Q+DGAV    G TVVL T    + L + + FFPLTV
Sbjct: 5   FDPIRLQANIGGNAVILETGRLANQADGAVWVQSGGTVVLVTAC-TQVLPEEKGFFPLTV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +YQE +YA G+IPG Y RRE  RP+E E+L+ R+IDR  RPLF K +++E Q+I  V+  
Sbjct: 64  DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178
           D    P V+++ AAS+AL +S +PFEGP+ G +V Y++G +V NP + +  G  +L+L  
Sbjct: 124 DGVVEPDVLALTAASSALHISKIPFEGPIAGGRVGYVDGAFVFNPTVQQMNGESTLNLVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI----DS 234
           + ++DAV+MVE     +SED++ DA+ +GHN  +P+I+   +L +   K  I        
Sbjct: 184 AASRDAVVMVEGGGQFVSEDMLADALEWGHNSVQPLIDLQEELREKAGKPKIAFVPPTPI 243

Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIV 292
           ++  KL    ++  +KE   +   +P +  R      + + +V+ F  E +     G+I+
Sbjct: 244 EELEKLVHATAEAGLKEAFAIKDKMPRREARKAVKQAVVEAVVAAFPDEPTYKAKAGDIL 303

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +   D++ K++RT++ +  +R+DGRD++TVR I  +VG+L RTHGS++F RG+T+++ V 
Sbjct: 304 A---DMEKKLLRTLIKETGIRLDGRDTKTVRPIGIEVGVLPRTHGSTIFARGETKSLCVA 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ +++L+G     FM+HYNF P   GEV  M  PSRREIGHG LA R+I PV
Sbjct: 361 TLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKPMRGPSRREIGHGALAERSILPV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FP+T+R+VS++ ES+GSSSMA+VCG+SLALMDAGVP+ +PVAGIAMGL+K+GDD
Sbjct: 421 LPGADEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPVKEPVAGIAMGLIKEGDD 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++L+DI GDED +G MDFKVAGT +G+T +QMD+KI GI + +M  AL QAK  RLHIL
Sbjct: 481 FLVLTDILGDEDAMGDMDFKVAGTANGVTGIQMDIKITGIPQAVMRQALSQAKEARLHIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M++VL+  R +L    P++E++ I P++IR VIG GGK I+ I   TGA ++I+D G 
Sbjct: 541 GRMAEVLAAPRAELSPLAPQLEVVNINPEKIREVIGPGGKNIKAITADTGASIDIEDSGK 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I + +L  +  A+E +       +V   YKG V KV+D GA +      +GL H+SQL
Sbjct: 601 ISIFAPTLDSLAKAKERVLFYDQHADVGANYKGIVRKVIDCGAIIEILPGLEGLCHVSQL 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
             ERVA  +DVVK G  + VK+L+ +  G+I+LS K V+++  G P
Sbjct: 661 DVERVASPADVVKLGQEIEVKVLEEEPSGRIRLSRKAVLNEERGIP 706


>gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName:
           Full=Polynucleotide phosphorylase 3; Short=PNPase 3
 gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 303/689 (43%), Positives = 439/689 (63%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T E++  GRP  +E G++A  + G+ +  YG+T VL T    +  K+G DFFPL+ +Y
Sbjct: 2   VKTFEMKLGGRPFVVEIGKVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RESRP+E   L +R+IDR IRPLF K Y N+ QVI  V+  D +
Sbjct: 62  EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSMDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
             P + +M+ +S AL +S +PF GP     V  I+G+Y++NP   + + S L+L VSGT+
Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGEYIVNPTSKQKEDSTLELIVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           +A++M+E  AN+L+E  +LDAI+F H E K ++  I  +     K    + +K   S L 
Sbjct: 182 NAIMMIEAGANELTEAQILDAIMFAHEEIKKIVAFIENIVSEVGKPKSEVIAKQMDSNLL 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E+   +   L  +    +K  R + I  +  + + YF  ++   ++ E+  +   +   
Sbjct: 242 TEVVIFLDTKLANAIKTFDKTERNENIQAVSAEALDYFEEKYEGRSK-EVHDILSMLIKV 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R ++  + +R D R  + +R IS QVG+L R HG+ LF RG+TQ + + TLG   D Q
Sbjct: 301 ETRKMITSEGIRPDNRKLDEIRPISTQVGILPRAHGTGLFNRGETQVLTITTLGDLRDAQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       +M HYNF P + GE   M  PSRREIGHG L  RA+ P++P    FPY
Sbjct: 361 RIDGIGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALLPMIPSKEDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+   +GSSS A+VCGS+L+LMDAGVPI + VAGIAMGL+K+ D  +ILSDI G
Sbjct: 421 AIRLVSEVLTCNGSSSQASVCGSTLSLMDAGVPIKRMVAGIAMGLIKEDDQVVILSDIQG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MD KVAGT+ GITAMQMD+KI GI   IM  AL+QA+ GRLHILN+M + ++ 
Sbjct: 481 MEDALGDMDLKVAGTEEGITAMQMDIKIAGIDRGIMETALEQARIGRLHILNKMKESITS 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R++L  + P+V  + + PD++R VIG GGKVI  I+++TG K+ I++DGT+ +A+    
Sbjct: 541 PRIELSSYAPKVTQIKVHPDKVREVIGAGGKVINKIIDETGCKITIENDGTIYVAAPDQE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A EMI  I   P V ++Y G+V+K+MDFGAFV     ++GLVHIS L+ ERV K +
Sbjct: 601 SSRRAVEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVTKVT 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+ EGD + VKL++ + +GKI LS K +
Sbjct: 661 DVLAEGDLIEVKLMEINPQGKIGLSRKAL 689


>gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
 gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
          Length = 699

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 315/708 (44%), Positives = 459/708 (64%), Gaps = 27/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVILSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  LI+R+IDR IRP+F + +  +  ++  V+ +
Sbjct: 61  VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPEGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEVNTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K + E     AK+  KE I     +F+K
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEVFAKLYGKENI-----EFTK 235

Query: 240 LEEEMSQMIKE--------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290
             EE+  ++K+         L+ +     K  R + +D L++++++ F  E +    E E
Sbjct: 236 --EEVLPLVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFIGENYPDVPEEE 293

Query: 291 IV--------SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +         + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF 
Sbjct: 294 LPEDVITEFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 353

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ++ + TLGT+ DEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG
Sbjct: 354 RGETQSLAITTLGTKADEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 413

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI
Sbjct: 414 SLAERALRYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 473

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL 
Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 533

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   R  IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+ I++QTG
Sbjct: 534 QAHEARQQILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKSIIDQTG 592

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           A V+I DDG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     
Sbjct: 593 ATVDITDDGLVSVFAQDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPG 652

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+HIS++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 653 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|297617194|ref|YP_003702353.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145031|gb|ADI01788.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 717

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/693 (44%), Positives = 462/693 (66%), Gaps = 17/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + E AGRPL++E G++A+Q++GA L  YG+TVVL T    +  ++G DFFPLT +Y+ER 
Sbjct: 7   QTEIAGRPLRVEIGKVAKQANGAALLYYGDTVVLVTATASKEPREGIDFFPLTCDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG+IPGG+++RE RPTE  IL +R++DR IRPLF K ++N+  V+  VM  D ++ P+
Sbjct: 67  YAVGRIPGGFIKREGRPTEAAILSARLMDRPIRPLFPKGFRNDVHVVATVMSVDQDNPPN 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V +++ AS AL +S +PF GP+    V  ++G++V+NP +++   S + L V GT+DA++
Sbjct: 127 VTAIIGASIALSISDIPFAGPIGAVIVGMVDGEFVINPTVEQSARSQMHLTVGGTRDAIV 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIV--IDSKDFSKLE 241
           MVE  AN++ E+ +LDAI F H E K +I+   K+     +  +E +V  ID +  + + 
Sbjct: 187 MVEARANEVPEETMLDAIFFAHEEIKRIIDFQEKIVAEIGLPKREVVVPEIDPEIEAAVR 246

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E    +++E +R S    +K  R  + +    ++  +F+  +   ++ E+ S+ + I  +
Sbjct: 247 EYGIPILEEAIRCS----DKLQREARTEAAADEIKQHFAEIYPEQDK-EVASIIDKITKE 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++LD+ +R+DGR    +R +S +VG+L RTHGS LF RG TQ + V TLG   +EQ
Sbjct: 302 IVRRMILDEGIRVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLSVTTLGAVGEEQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   ++ HYNF P + GE   +  P RREIGHG LA +A+  VLP   +FPY
Sbjct: 362 ILDGLGVEESKRYLHHYNFPPYSVGETRPIRGPGRREIGHGALAEKALEAVLPSQEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+SM +VCGS+L+LM AGVPI +PV+GIAMGLVK+GD F +LSDI G
Sbjct: 422 TIRVVSEVLESNGSTSMGSVCGSTLSLMHAGVPIKRPVSGIAMGLVKEGDRFAVLSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAG+  G+TA+QMD+KI G++  I+  AL+QAK GR++I++ M K +S+
Sbjct: 482 IEDALGDMDFKVAGSAEGVTALQMDIKIPGVTREILHAALKQAKEGRMYIMDIMMKAISQ 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              +L  + PR+  M I  D+IR VIG GGK+I+ I+++TGA+++I+DDG++ I +S   
Sbjct: 542 PNPELSPYAPRMIRMMIDTDKIRQVIGPGGKIIKKIIDETGARIDIEDDGSLFIVASDQE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLSTE 655
             E A+  +  +T   EV K Y G+VV++ DFGAFV           ++GLVHIS+L+  
Sbjct: 602 SAEKAKYYVECLTKDVEVGKTYVGKVVRIADFGAFVEIIPGVLGLPGKEGLVHISKLAEN 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RVAK  DVV  GD + VK+ + D +G+I LS +
Sbjct: 662 RVAKVRDVVDIGDEILVKVTEIDSQGRINLSRR 694


>gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera
           micronuciformis F0359]
 gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera
           micronuciformis F0359]
          Length = 717

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/685 (43%), Positives = 452/685 (65%), Gaps = 3/685 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++++AGRPL +E G++A+QS GA L  YG+T V  +    +  ++  DFFPLTV+Y+E+ 
Sbjct: 7   QMDFAGRPLTVEVGKLAKQSSGAALVRYGDTAVFVSATGSKEAREDADFFPLTVDYEEKM 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE +P E+  L +R+IDR IRPLF K Y+++  V+      D +++P 
Sbjct: 67  YAVGKIPGGFIKREGKPPESATLFARLIDRPIRPLFPKTYRHDVHVVAYDFAVDHDNAPE 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ AS AL +S +PF GP+ G +V  I+G +++NP +++ + S +D+ V+GT+DA+L
Sbjct: 127 IAAMIGASVALCMSHIPFAGPIAGVRVGRIDGNFIINPTVEQSEKSDMDIVVAGTKDAIL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIE-AISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           MVE  A ++ E  +LDAI+F H E + V+E  +S L ++   +   ++ +  + + E + 
Sbjct: 187 MVEGGAKEVPESDILDAIMFAHEEIRKVVEFQLSFLDEISVPKQEFVEKELPADIVEAIH 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
              +  ++ + F  +K  R ++++ ++  +  +F+  +   N+ ++ ++ + +  ++VR 
Sbjct: 247 TYGEAKMKEAIFDADKMAREEKMNAVEADIYEHFADIYPD-NQADVATITQKMIKEIVRH 305

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++   K+R DGR    VR +S +VGL +RTHG+ LF RG TQ +   TL    + Q++D 
Sbjct: 306 MIAVDKIRPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILSFATLAPLSEAQHIDG 365

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       +M HYNF   + GE      P RREIGHG+LA RA+  V+P   +FPY +R+
Sbjct: 366 VGTETERRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALTQVMPSEEEFPYAIRV 425

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSM +VCGS+LALMDAGVPI  PV+G+AMGLV   DDF IL+DI G ED 
Sbjct: 426 VSEVLESNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTKDDDFTILTDIQGMEDA 485

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA  GRLHI+++M  VL   R +
Sbjct: 486 LGDMDFKVAGTTKGVTAIQMDIKIKGLSREILDTALKQAHEGRLHIMDKMLAVLDAPRKE 545

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  + PR+  M + PD+IR++IG GGK+I+ I E+TGAK++IDD G V IAS        
Sbjct: 546 LSPYAPRIITMQVHPDKIRDIIGPGGKMIKQITEETGAKIDIDDTGLVYIASVDGEGGAK 605

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+E I ++T   EV + Y G+V ++M FGAFV     ++GLVHISQL+TERV K  DVV 
Sbjct: 606 AKEWIENLTKDVEVGETYVGKVTRLMAFGAFVEVLPGKEGLVHISQLATERVEKVEDVVN 665

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK ++ D +G+I LS KVV
Sbjct: 666 VGDEIVVKCVEIDSQGRINLSRKVV 690


>gi|257468232|ref|ZP_05632328.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062514|ref|ZP_07926999.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688190|gb|EFS25025.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
           ATCC 49185]
          Length = 699

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 322/708 (45%), Positives = 454/708 (64%), Gaps = 27/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   VE+E AGR L   TG+IARQS GAV+  YGETV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKKVELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RE RP+ N  L +R+IDR IRP+F + + ++  ++  V  +
Sbjct: 61  VDYIEKFYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +++P  + ++ +S ALMLS LPF GPV G  V Y +G+++LNP  +E + S L+L V+
Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVVGYKDGEFILNPTPEELETSDLELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G++DAV MVE  A +L E+ +L AI+F H   K +     + AK+  KE I     DF K
Sbjct: 181 GSKDAVNMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKI-----DFVK 235

Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--- 288
             +E+  ++K        E L+ +     K  R + +D L+++++  F  E+    E   
Sbjct: 236 --KEVLPLVKDFIDEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENYEGIEEED 293

Query: 289 ------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                 GE    + D+  K+VR  +L  K R+DGR +  +R + A+VG+L   HGS++F 
Sbjct: 294 IPEEVIGEFKGYYHDLMKKLVREAILYHKHRVDGRKTTEIRPLFAEVGVLPIPHGSAMFT 353

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+VV TLGT+EDEQ VD L       F +HYNF P + GE  RMG+P RRE+GHG
Sbjct: 354 RGETQAVVVTTLGTKEDEQLVDDLEKEYFKKFYLHYNFPPYSVGETGRMGSPGRRELGHG 413

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P    FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI
Sbjct: 414 SLAERALSYVIPSEESFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGI 473

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+
Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALK 533

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   R  IL  M+  +S +   L    PR+  M I  D+I  +IG GGK I+GI+E+TG
Sbjct: 534 QALDARNEILVVMNNAIS-APADLRPNVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTG 592

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           A ++I DDG V I S     ++    ++ +     EV +IY G+VV +  FGAF+     
Sbjct: 593 ATIDISDDGNVSIFSKDEEVLKETITLVNAFVKDVEVGEIYNGRVVNIAKFGAFMEILPG 652

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+H+S++S ERVA   DV+K GD   VK++  ++ GKI LS K +
Sbjct: 653 KEGLLHVSEISNERVANVEDVLKVGDRFDVKVISTEN-GKISLSKKKI 699


>gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437]
          Length = 697

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 314/693 (45%), Positives = 444/693 (64%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    E E+AGR L +E G+ A Q++GAVL  YG+T V+AT       KD   FFPLT
Sbjct: 1   MMEPTIFETEFAGRRLTMEVGKYANQANGAVLVRYGDTAVMATATASDEPKD-LGFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + Y+N+ QV+  VM  
Sbjct: 60  VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + S  + +M+ AS AL +S +PF GP+ G  V  +NG++VLNP +++ + S L L V+
Sbjct: 120 DQDCSTEIAAMIGASTALSISDIPFAGPIAGVIVGRVNGKWVLNPSVEQAEKSDLHLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+  + MVE  A+++ E+V+L+ I+FGH   K +I    K+     KE +  D     S
Sbjct: 180 GTKHGINMVEAGADEVPEEVMLEGILFGHEAIKEMIAFQEKIVGQVGKEKMEPDLHQVDS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
           +LE  + ++    +  +  + EK  R   I+ +++ ++   + E    ++  EI  V + 
Sbjct: 240 ELERRVRELSTAPMAKAAQVGEKQERQDAINQVRESVLQQLAGEDPEADQTKEIEEVLDT 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  + VR ++L++K R DGR  E +R ++++VG+L RTHGS  F RG TQ + V TLG  
Sbjct: 300 VLKEEVRRMILEEKKRPDGRSPEEIRPLTSEVGILPRTHGSGHFRRGQTQVLSVCTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   
Sbjct: 360 GDVQILDGLDLEESKRFMHHYNFPPYSVGESRPMRGPGRREIGHGALGERALEPVIPSEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+ ES+GS+S A++C S+LALMDAGVPI  PVAGIAMGLVK+GD   +L+
Sbjct: 420 EFPYTIRLVSEVLESNGSTSQASICASTLALMDAGVPIKDPVAGIAMGLVKEGDQVTVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI  I   ++  ALQQA R R  +L+ M+ 
Sbjct: 480 DIQGMEDHLGDMDFKVAGTRKGVTALQMDIKIEEIDREVLSQALQQAHRARHVLLDNMTA 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L E R +L    P++  + I PD+IR VIG  G+VI  I+++TG K++I+ DG + IAS
Sbjct: 540 TLGEPRRELSPHAPKILTLKIHPDKIREVIGPSGRVINKIIDETGVKIDIEQDGRIFIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A+ E A+ +I  +     V +IY G V +V  +GAFV     ++GLVHISQL  ERV
Sbjct: 600 ADPAQNEKAKSIIEDLVREVVVGEIYIGTVKRVEKYGAFVEILPGKEGLVHISQLDKERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K SDVV  GD + VK+ + D++G+I LS K +
Sbjct: 660 NKVSDVVNLGDQIQVKVTEIDNQGRINLSRKAI 692


>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
 gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
          Length = 689

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/683 (44%), Positives = 451/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P 
Sbjct: 64  YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186
           +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP +   ++  L++ V+GT+DA+L
Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD  +++ + + 
Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D 
Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR+
Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I  D+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G++ LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685


>gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
 gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
          Length = 703

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I  +  +   
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 244

Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292
           L +  +     E L+ +     K  R + +D L+++++  F+ E +    E E+      
Sbjct: 245 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELIERFTQENYPDVPEEELPEDIIL 304

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG+ V+I D
Sbjct: 545 EILELMNNTISKPA-KLKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703


>gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
 gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
          Length = 713

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 309/693 (44%), Positives = 449/693 (64%), Gaps = 11/693 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +++ GR + +ETG IA+Q+DGAV+  YG+TV L+T       K+G DFFPLTV+++E+ Y
Sbjct: 8   LDFCGRGITVETGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF++ ++NE QV+  V+  D ++SP +
Sbjct: 68  SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPEM 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  AS AL +S +PF GP+ G +V  ING+ V NP + + ++  +DL V+GT  A+ M
Sbjct: 128 AAMFGASLALCISDIPFNGPIAGCKVGRINGELVANPTVAQMEESDIDLTVAGTAQALNM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE  A ++SE+ +L A++FGH + K +     ++   C KE   I+     + ++ E+  
Sbjct: 188 VEAGAKEVSEEDMLAALMFGHEQIKKLCAFQEEIVAACGKEKREIELYAVDETIDREVRS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNE-----GEIVSVFEDIQA 300
             +  +R +  I EK  R  +IDDL  +     ++ E++S  E      +   +   I+A
Sbjct: 248 NFEAQIRAAVSIKEKLERYGKIDDLTDEAAEMIANKEYASEKEQNNAVKQAREICRGIEA 307

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++++ KVR DGR  + +R +++QV LL R HGS+LF RG+TQ +   TLG   D 
Sbjct: 308 DEVRRLIIEDKVRPDGRQIDEIRPLNSQVDLLPRVHGSALFTRGETQVLSTTTLGALNDN 367

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+      FM HYNF P   GE  RMG P RREIGHG L  RA+  VLP   +FP
Sbjct: 368 QIIDDLTVVDSKRFMHHYNFPPYCVGETGRMGNPGRREIGHGALGERALAQVLPSVDEFP 427

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSD 478
           YT+R V+++ ES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D D   + +L+D
Sbjct: 428 YTIRTVADVMESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDDDSGKYTVLTD 487

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT +GITA+QMD+K+ GI++NI   AL QA + RL IL+ M   
Sbjct: 488 IQGMEDHFGDMDFKVAGTKNGITALQMDIKVTGITKNIFEEALAQAHKARLEILDNMLAC 547

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIAS 597
           +SE R QL  + P++ +M I PD+I++VIG GGK+I  I+ Q    K++IDDDG V I  
Sbjct: 548 ISEPRTQLSPYAPKIAMMNIDPDKIKDVIGPGGKMINEIIAQCDNVKIDIDDDGKVVIYH 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    IE A++MI  I  V +V  +Y  +VV++  FGAFV+  G  DGL+HIS++S  RV
Sbjct: 608 NDYDTIEKAKQMISDIVRVAKVGDVYAAKVVRLEKFGAFVNLFGNTDGLLHISKISHHRV 667

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  DV+K GD + VK+ + D++G+I +S K +
Sbjct: 668 DKVEDVLKLGDVIDVKVTEIDNKGRINVSAKAL 700


>gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           chlorochromatii CaD3]
 gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3]
          Length = 728

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 332/710 (46%), Positives = 465/710 (65%), Gaps = 34/710 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           GR L +ETG++A+Q+DGA +   G+T+VLATVV  +     GQDFFPL V Y+E+  A G
Sbjct: 12  GRILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQVEYREKYSAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+II+V+  D  +   V+  
Sbjct: 72  RFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYYETQIIISVISSDQVNDGDVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           +AASAA+M+S +PF+ P+   +V  +NG Y++NP ++E  +  +D+ + GT D + M+E 
Sbjct: 132 LAASAAIMVSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDIDMCIGGTNDTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMS 245
           E N++SE  +L+AI FGH   + +     ++A   AK      P VI ++    L+  + 
Sbjct: 192 EMNEISETEMLEAIQFGHTAIRKLCVLQQEVAAEVAKPKRLFVPTVIPTE----LDSFVR 247

Query: 246 QMIKEDLRVSCFIP----EKYVRCKQI-DDLKKKMVSYF----SSEHSSWNEGEIVSVFE 296
              +  LR   + P    E+  R   I ++     + +F    SSE +  +  + + + E
Sbjct: 248 ANCQSRLRELAYTPLGKEERAERTAAIYNETLAATLEHFRATISSEEAQADTAKALCLNE 307

Query: 297 DI--------QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            I        + +V+R ++LD   R+DGR  + VR I+ ++GL+ R HGS+LF RG+TQA
Sbjct: 308 HIIEDQIHAVEKEVMRHMILDDAKRLDGRALDQVRPITIELGLIPRAHGSALFTRGETQA 367

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +V +TLGT++D Q VD+L+ +    F +HYNF P + GE  R+G+  RREIGHG LA R+
Sbjct: 368 LVTLTLGTQKDAQSVDNLTNSDDKRFYLHYNFPPFSVGECGRLGSIGRREIGHGNLAERS 427

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           I  V P  A+FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K
Sbjct: 428 IKMVAPTEAEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIK 487

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + D + +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+QA++GR
Sbjct: 488 ENDKYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHIVENALEQARKGR 547

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHILNEM K +  SR  L  + PR+  + IP D I  VIG GG+ IRGI E+TGA++NI 
Sbjct: 548 LHILNEMEKAIPASRTDLATYAPRLTTIKIPSDCIGMVIGKGGETIRGITEETGAEINIA 607

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLV 647
           DDGTV IA ++    +AA   I+S+T  PEV  IY G+V  V D  GAFV F    DGLV
Sbjct: 608 DDGTVTIACTTKEGTDAALATIKSLTAKPEVGNIYVGKVRDVRDELGAFVEFLPKTDGLV 667

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQ 692
           HIS++S+ RVAK SD +K GD V VKL+D   D R GK K  LS+K ++Q
Sbjct: 668 HISEISSTRVAKVSDHLKVGDKVTVKLVDVRKDPRTGKTKFALSIKALEQ 717


>gi|169824458|ref|YP_001692069.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
 gi|226702653|sp|B0S1D9|PNP_FINM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167831263|dbj|BAG08179.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
          Length = 714

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 300/689 (43%), Positives = 458/689 (66%), Gaps = 2/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT ++
Sbjct: 2   IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +
Sbjct: 62  EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           ++P +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ + S L+L V+GT+
Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241
           DA++MVE   N ++E  VL AI+  H E K + E I  + K C K +   I  +   +L+
Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           EE+     EDL+      +K  R   I+ LK+ +V YF  ++      ++ ++++D++  
Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDYFVEKYDESIASKVSTIYDDLEKS 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q
Sbjct: 302 EVRRLILEDYIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 VLDGLIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K+ D+ +ILSDI G
Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE
Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++ ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +  
Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  
Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+KE D + VKL+D DD+GK+ LS K +
Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKAL 690


>gi|239907801|ref|YP_002954542.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 751

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 314/706 (44%), Positives = 455/706 (64%), Gaps = 14/706 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F    +E     + + +ETGR+A Q+DGA+    G TVVL T    ++L + + FFPL V
Sbjct: 5   FSPIRLEAAIGDKTVTIETGRLANQADGAIWIQSGGTVVLVTAC-TQALAEEKGFFPLVV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +YQE  YA G+IPG Y RRE  RP+E E+L+ R+IDR  RPLF K +++E Q+I  V+  
Sbjct: 64  DYQEMAYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS--LDLFV 178
           D E  P V+++  ASAAL LS +PF+GP+ G +V YI+GQ+VLNP + +      L+L  
Sbjct: 124 DGEVEPDVLALTGASAALHLSKIPFQGPIAGGRVGYIDGQFVLNPTVAQIAAGADLNLVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           + ++DAV+MVE     +SE+++ DA+ FGH    P+++   +L +   K  I        
Sbjct: 184 AASRDAVVMVEGAGRFVSEELLADALEFGHKAILPLLDLQEQLREKAGKPKIAFTPPAPI 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-----SYFSSEHSSWNEGEIV 292
            +LE  ++   +  L+ +  I EK  R +    +K+ ++     +Y  +       GEI 
Sbjct: 244 VELEALVAATAEAGLKQAFTIQEKMARREARKAVKQAVIEAVVAAYPETPLYKMKAGEI- 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              E ++ K++R ++ D  +R+DGR++ TVR I  +VG+L RTHGS+LF RG+T+A+ V 
Sbjct: 303 --LESMEKKLLRKLIKDTGIRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVA 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ +++L+G     FM+HYNF P   GEV  +  PSRREIGHG LA R+I PV
Sbjct: 361 TLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRREIGHGALAERSILPV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FP+T+RIVS++ ES+GSSSMA+V G+SLALMDAGVPI  PVAGIAMGL+K+ DD
Sbjct: 421 LPGPEEFPFTMRIVSQVMESNGSSSMASVAGASLALMDAGVPIKAPVAGIAMGLIKEDDD 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++L+DI GDED +G MDFKVAGT  G+T +QMD+KI GI + +M  AL QAK  RLHIL
Sbjct: 481 FLVLTDILGDEDAMGDMDFKVAGTADGVTGIQMDIKITGIPQAVMRQALNQAKDARLHIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M+ VL E R +L    P++ ++ I P++IR VIG GGK I+ +  +TGA ++I+D G 
Sbjct: 541 GRMAAVLPEPRPELSALAPQLAVVHINPEKIREVIGPGGKNIKAMTAETGASIDIEDTGK 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I + +L  +E A+  +       +V   YKG+V+K++D GA V      +GLVH+SQL
Sbjct: 601 ISIFAPTLESLEKAKARVLYYDQHADVGANYKGRVIKIIDCGAIVEILPGLEGLVHVSQL 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
             ERVA  +DVVK G  + VK+LD +  G+++LS K V+++  G P
Sbjct: 661 DVERVASPADVVKMGQEIEVKVLDVEPTGRVRLSRKAVLNEERGIP 706


>gi|297588437|ref|ZP_06947080.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           53516]
 gi|297573810|gb|EFH92531.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           53516]
          Length = 714

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/689 (43%), Positives = 457/689 (66%), Gaps = 2/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT ++
Sbjct: 2   IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +
Sbjct: 62  EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ D+  L+L V+GT+
Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTQEQRDKSDLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241
           DA++MVE   N ++E  VL AI+  H E K + E I  + K C K +   I  +   +L+
Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNVELD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           EE+     EDL+      +K  R   I+ LK+ +V +F  ++      ++ ++++D++  
Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFVEKYDESIASKVSTIYDDLEKS 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q
Sbjct: 302 EVRRLILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 VLDGLIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K  D+ +ILSDI G
Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKKDDNVVILSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE
Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++ ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +  
Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  
Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+KE D + VKL+D DD+GK+ LS K +
Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKAL 690


>gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
          Length = 732

 Score =  602 bits (1551), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 314/728 (43%), Positives = 467/728 (64%), Gaps = 49/728 (6%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T  ++ AG+ +K+ETG IARQ+ G+VL T G T VL T    + +K+GQDFFPLT
Sbjct: 1   MFDKKTYILDVAGKEVKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RES+P+  E+LISR+IDR IRPLF + + N   V+INV+  
Sbjct: 61  VDYIEKFYATGKFPGGFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFNAVHVVINVVSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF--V 178
           D  + P  ++ +  S AL LS +PF GPV G  V Y+NG+Y++NP   E + ++D++  V
Sbjct: 121 DGINMPEDIATIGVSFALGLSDIPFSGPVAGVTVGYVNGEYIINPD-KEQRANMDIYLSV 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT+ A+ MVE  A+++SE+ +L+AI+ GH E K          K+C ++  +++S + +
Sbjct: 180 AGTKSAITMVEAGASEVSEEEMLNAIMLGHEEIK----------KICEQQETILNSLNIT 229

Query: 239 KLE-------EEMSQMIKE---DLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-------- 280
           K+E       E ++  + +   +L+ +  +P K  + + ID+L + ++S F         
Sbjct: 230 KMEFKGINYDERVTTFLNKYQGELKNAILVPGKLEKYEAIDNLCESLLSTFKLEIAKEIL 289

Query: 281 --------------SEHSSWNEGEIVSVFE----DIQAKVVRTVMLDKKVRMDGRDSETV 322
                          E+   +  E+V  F+    D++ K+VR +++  K R DGR  + +
Sbjct: 290 SKEKTEEEKLLELIGENKEKSVDELVKEFKKYYHDLEKKIVRELIIFDKYRADGRKIDEI 349

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R ++AQ+ +L+  HGS+LF RG+TQA+V  TLG++EDEQ +D + G     F +HYNF P
Sbjct: 350 RPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNKKFFLHYNFPP 409

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            + GE   M AP RRE+GHG LA RA+  V+P    FPYT+R+VSEITES+GSSS A++C
Sbjct: 410 FSVGEAGFMRAPGRRELGHGNLAERALKAVMPLIDDFPYTVRVVSEITESNGSSSQASIC 469

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           G SLALM AGVPI   VAGIAMGL+K+ ++F +L+DI G EDHLG MDFKVAGT  GITA
Sbjct: 470 GGSLALMAAGVPIKGTVAGIAMGLIKEAENFTVLTDIQGLEDHLGDMDFKVAGTKKGITA 529

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +QMD+KI GI++ IM +AL QA +GR+HI+  M   + ESR  L E  P++  + I P +
Sbjct: 530 IQMDIKIEGINKEIMEIALTQAHKGRMHIIEVMEATIPESRPNLPENAPKIINLKIDPSK 589

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           I  +IG  GK+I+ I+E+TG K++++DDG V I      ++  A E++   T   E++K+
Sbjct: 590 IAGLIGPAGKIIKSIIEETGVKIDVEDDGRVSIFGVDQEKMNRAFELVTQYTLTVELDKV 649

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           YKG+V K+  FGAFV      +GL+HIS++S +R+ +  DV+K  D V VK++  +D  K
Sbjct: 650 YKGRVTKLAKFGAFVELVPGTEGLLHISEISHKRIKQVEDVLKVDDIVDVKVIALEDNNK 709

Query: 683 IKLSMKVV 690
             LSMK +
Sbjct: 710 FSLSMKAL 717


>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
 gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
          Length = 689

 Score =  602 bits (1551), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/683 (44%), Positives = 451/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRMLTIETGELAKQASGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P 
Sbjct: 64  YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP   + ++  L++ V+GT+DA+L
Sbjct: 124 ICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD  +++ + + 
Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D 
Sbjct: 303 MITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR+
Sbjct: 363 LGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I  D+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVS 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G++ LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685


>gi|42526551|ref|NP_971649.1| polynucleotide phosphorylase/polyadenylase [Treponema denticola
           ATCC 35405]
 gi|81412546|sp|Q73NW1|PNP_TREDE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|41816744|gb|AAS11530.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
           35405]
          Length = 698

 Score =  602 bits (1551), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 300/683 (43%), Positives = 466/683 (68%), Gaps = 20/683 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++G++ A Y  + +LAT+      ++G D+ PLTV+Y E+ YA GKIPG
Sbjct: 14  LILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RP + EIL+SR+IDR +RPLF+K +  E Q++   +  D+ + P +++++A+S
Sbjct: 74  GFIKREGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAVIASS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AA+ +S +PF+GPV  A+V Y NG+Y++NP   + +   +++ V+GT++ + MVE  AN+
Sbjct: 134 AAVHISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIVVAGTKEGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEM--SQMIKE 250
           +SE+V+L A+   H   K + +    L ++  KE  P+V        LE E+   Q I +
Sbjct: 194 VSEEVMLTALEKAHEMIKSLCKMQEDLRELAGKEKLPLV-------PLEAELENKQAIYD 246

Query: 251 D----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRT 305
           +    L  + ++  K  R ++ D +KK++   ++ +     + ++  ++FE+++  ++RT
Sbjct: 247 EAFPRLSKTLYLSTKMERREESDKVKKELAEKYAEQLEDEIQLKLFNALFEEMEYNILRT 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +LDK +R+DGR ++ +R I+ ++G+L R HGS++F RG+TQ++ VVT+GT  DEQ  D 
Sbjct: 307 NILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDD 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G +R +F++HYNF P + GEV R+G   RREIGHG LA R+++P++P+  +FPYT+R+
Sbjct: 367 IEGDRRENFILHYNFPPFSVGEVGRLGT-GRREIGHGNLAHRSLYPMVPEREKFPYTVRV 425

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDED 484
           VSE+ ES+GSSSMATVC  +L+++ AGVP+ KPVAGIAMGL+ +G+D + ILSDI G+ED
Sbjct: 426 VSEVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITEGNDRYAILSDILGEED 485

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  GIT  QMD+KI G+S  IM  AL QAK GR+HIL  M++ +S    
Sbjct: 486 HLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQCISAPNA 545

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS-SLAEI 603
           +L ++ PRVE+M IP D+I  +IG GGK ++ I ++    +N ++DGTV I S    +++
Sbjct: 546 ELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISDKYNVTINTENDGTVTIYSKDGTSDL 605

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A+ +++ IT  PEV  +Y G V K+MDFGAFV     ++GL HIS+LS  RV K SDV
Sbjct: 606 KGAKSIVKGITSDPEVGMVYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRSRVEKVSDV 665

Query: 664 VKEGDTVWVKLLDFDDRGKIKLS 686
           +KEG  + VKLL+ D  G++ LS
Sbjct: 666 LKEGQEIPVKLLEIDKLGRLNLS 688


>gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11]
          Length = 699

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I  +  +   
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 240

Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292
           L +  +     E L+ +     K  R + +D L+++++  F+ E +    E E+      
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEELPEDIIL 300

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG+ V+I D
Sbjct: 541 EILELMNSTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911]
 gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911]
          Length = 706

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/691 (44%), Positives = 452/691 (65%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D     ++WAGR L +E G++A+Q++GA L  YG+T VL+T    +  K+  DFFPLTVN
Sbjct: 4   DKKIYSLDWAGRTLTVEIGQLAKQANGAALIRYGDTAVLSTATASKEPKN-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PF GP+ G  V  ING++V+NP +++ ++  + L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALSVSDIPFGGPIAGVTVGRINGEFVINPTVEQQNESDMHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+++ E+ +L+AI++GH E K +I    ++     KE   I   +  + +
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMYGHEEIKRLISFQEQIVSEVGKEKTEIKLYEIDADI 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299
           E ++ +  ++D+  +  + EK+ R   I  +K  +++ Y   E       ++  V + + 
Sbjct: 243 ESKVREAAEKDMVSAIQVQEKHAREAAIKTVKDAVLAQYEEQEADDETIKQVKKVLDKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S+++GLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KAEVRRLITEEKVRPDGRGLDVIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGIEEEKRFMHHYNFPNFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K GD + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGDYYSILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+ IL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKAGRMQILDSMLATI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E + +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S  
Sbjct: 543 AEPKKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DV+  GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVLSLGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
 gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
          Length = 703

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I  +  +   
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 244

Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292
           L +  +     E L+ +     K  R + +D L+++++  F+ E +    E E+      
Sbjct: 245 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEELPEDIIL 304

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG+ V+I D
Sbjct: 545 EILELMNSTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703


>gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides BS1]
 gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides BS1]
          Length = 734

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/703 (44%), Positives = 469/703 (66%), Gaps = 28/703 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           G+ + +ETG++A+Q+DGA +   G+T+V+ATVV  R+     QDFFP+ V Y+E+ YA G
Sbjct: 12  GKVITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQVEYREKYYAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+++RESRP+E EIL +R+IDR++RPLF   Y  +TQ+II+V+  D  +   V+  
Sbjct: 72  KFPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISSDQLNDADVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           +AASAA+M+S +PF   +   +V  ING++V+NP ++E  Q  +D+ + GT D + M+E 
Sbjct: 132 IAASAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISIGGTNDTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP---IVIDSKDFSKLEEEMSQM 247
           E N++SE  +L+AI FGH   K +      +A    K     + ID+ D  +L+E + + 
Sbjct: 192 EMNEISEAEMLEAIRFGHEAIKKICSLQDDIAAEVNKPKRSFLAIDAPD--ELKESIKEA 249

Query: 248 IKEDLRVSCFIP-EKYVRCKQIDDLKK----KMVSYFSSEHSS------------WNEGE 290
            +  L+   ++P  K  R ++   + K    +++  + +E ++             NE  
Sbjct: 250 CEAPLKELAYMPLAKEERAEKTTAVYKSITEQILGRYKNEITAEDIAADPSKALYLNEQI 309

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I      I+ +V+R ++LD   R+DGR  E VR IS ++GL+ R HGS+LF RG+TQA+V
Sbjct: 310 ISGHIHAIEKQVMRHMILDDAKRLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALV 369

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V+TLGT++D Q +D+L       FM+HYNF P + GE  R+G   RREIGHG LA RA+ 
Sbjct: 370 VLTLGTKKDAQMIDTLLDDTEKRFMLHYNFPPFSVGETGRVGGVGRREIGHGNLAERAVK 429

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            V+P  ++FPYT+R+VSEI ES+GSSSMA+VCG++LA MD GVP++KPV+GIAMGL+K+ 
Sbjct: 430 KVVPSESEFPYTIRLVSEILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIAMGLIKED 489

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D++ +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  AL+Q+K GRLH
Sbjct: 490 DNYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILEKALEQSKNGRLH 549

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M++ +++ R ++G++ P++  + +P D I  +IG GG+ IR I E+TGA++N+DDD
Sbjct: 550 ILDKMTESIADPRGEIGQYAPKLSTIQVPVDAIGMIIGKGGETIRSITEETGAQINVDDD 609

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHI 649
           GTV I+S +     AA E I+++   PEV  IY G+V  +  D GAFV      DGLVHI
Sbjct: 610 GTVTISSPNGESAAAAIETIKTLISKPEVGTIYMGKVKDIREDLGAFVEILPRTDGLVHI 669

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689
           S+++ ERV K SD +K+GD V VKL+D   D R GKI+ ++ +
Sbjct: 670 SEIARERVNKVSDHLKQGDRVKVKLIDIRKDQRSGKIRYALSI 712


>gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
           20601]
 gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
           20601]
          Length = 722

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/686 (44%), Positives = 448/686 (65%), Gaps = 6/686 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLTVNY+E+ Y+
Sbjct: 11  EWAGQKLSIEVGQLAKQASGAALVRYGDTVVLTAAVGSKKPRPG-DFFPLTVNYEEKMYS 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   D + SP + 
Sbjct: 70  VGKVPGGFLKREGRPSDKATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V  I+G+YV+NP  ++ ++  ++L V+GT +A+ MV
Sbjct: 130 AMLGSSIALCISDIPFDGPIAGVDVGLIDGKYVINPTPEQFEKSDINLTVAGTYEAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQM 247
           E  A ++SE+ +L+AI+FGH E K + +   ++ +   KE   I+      +LE E+   
Sbjct: 190 EAGAKEVSEEAMLEAIMFGHEEIKRLCKFQEEIVQAVGKEKREIELFVSDPELEAEVKAA 249

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVVR 304
            +  ++ +    EK  R   I+D+K++++  + +   E  +    E+  + E I+   +R
Sbjct: 250 SEAKMKTAIKTEEKKAREAAIEDVKEEILETYKAKELEDEAAVLAEVAHILEMIEKDEMR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++   K+R DGR    +R +S++ GLL R HGS LF RG TQA+ + TL    + Q +D
Sbjct: 310 RLISQDKIRPDGRKVNEIRPLSSETGLLPRVHGSGLFTRGQTQALSICTLAPLREHQIID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P   +FPYT+R
Sbjct: 370 GLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIR 429

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSS A++CGS+LA+MDAGVPI  PVAGIAMGLVK GDD+ IL+DI G ED
Sbjct: 430 LVSEVLESNGSSSQASICGSTLAMMDAGVPIKAPVAGIAMGLVKLGDDYTILTDIQGMED 489

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           H G MDFKVAGT  GITA+QMD+KI G+S  I+  AL+QAK GRLHIL  ++  ++  R 
Sbjct: 490 HFGDMDFKVAGTKDGITALQMDIKIDGLSRQILHEALEQAKEGRLHILEHLNATIAGPRE 549

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            L  + P++  ++I P++I++VIG GGK I  I+++TG K++I+ DGTV +AS      +
Sbjct: 550 TLSPYAPKIVTLSIKPEKIKDVIGPGGKQINNIIDETGVKIDIEQDGTVYVASQDEEMNK 609

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A ++I  I    EV +IY G+V ++  FGAFV      DGLVHIS+L+ ERV K  D++
Sbjct: 610 KAIQIIEDIVREVEVGEIYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDIL 669

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD V VK+++ D +G++ LS K +
Sbjct: 670 KLGDEVKVKVIEVDHQGRVNLSRKAL 695


>gi|19705029|ref|NP_602524.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|81485419|sp|Q8RIA1|PNP_FUSNN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|19712941|gb|AAL93823.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 703

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 309/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292
            +++ +     E L+ +     K  R   +D L+++++  F  E +    E E+      
Sbjct: 245 LVKDFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 304

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 SYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + R+
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARI 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI+EQTGA V+I D
Sbjct: 545 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAALIGPGGKNIKGIIEQTGATVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   +++ S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDADTLEKTLKLVDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703


>gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132]
 gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans ND132]
          Length = 753

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 311/681 (45%), Positives = 453/681 (66%), Gaps = 11/681 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG+ ARQ+ GAV  + G+T VL T V  + L + + FFPLT NYQE  YA G++PG
Sbjct: 20  ITLETGKYARQASGAVTISSGDTTVLVTAV-TQPLAEDRGFFPLTCNYQEMAYAAGRVPG 78

Query: 76  GYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
            Y RRE  RP+E E L+SR+IDR IRPLF+K + +E Q+I  V+  D   +P V+++  A
Sbjct: 79  NYFRREVGRPSERETLVSRLIDRPIRPLFAKGFTDEVQIIATVLSADKRVNPDVLALTGA 138

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVSGTQDAVLMVELEA 192
           SAA  +S +PF GP+VGA+V Y++ ++VL P     E++ SL+L  + T+DA++MVE   
Sbjct: 139 SAACHISKMPFLGPIVGARVGYVDNEFVLYPSYKGIEERSSLNLIFAATRDAMVMVEGGG 198

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           N +SED+V DA+ +GH + +P+ +   +L  K+   +  V   +   ++ E + +++ +D
Sbjct: 199 NFVSEDLVADALAWGHEQVRPLFDIQDELREKVGVPKLEVTPPQRDEQVAEYLGEILTDD 258

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSY----FSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           L+ +   PEK VR    D  K+K        F  + S     E   +  D+  K+VR  +
Sbjct: 259 LKKALTTPEKMVRYAAKDAAKQKAKVAVAEKFPDDPSKLAAVE--DIVGDMTKKIVRERI 316

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + + +R+DGR++ TVR +S +VG+LQ+THGS+LF RG+T ++   TLG+  DEQ  DSL 
Sbjct: 317 VKEGLRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLGSTRDEQRYDSLL 376

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G     FM+HYNF P   GE   +  PSRRE+GHG LA RA+ PV+P    FP+T+R+VS
Sbjct: 377 GDATKRFMLHYNFPPYCVGEARMLRGPSRREVGHGALAERALTPVIPDPENFPFTIRVVS 436

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EI ES+GSSSMA+VCG++L+LMDAGVPIS PVAGIAMGL K+GD + +L+DI GDED LG
Sbjct: 437 EIMESNGSSSMASVCGATLSLMDAGVPISDPVAGIAMGLCKEGDQYFVLTDILGDEDALG 496

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  GITA+QMD+KI GI ++++  ALQQAK  R HIL+ M++V+++ R +L 
Sbjct: 497 DMDFKVAGTRDGITAIQMDIKIAGIPQDVLKKALQQAKEARTHILDHMAEVIAKPRPELS 556

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P+++++ I P++IR+VIG GGK I+ I  +T A ++I+D G + I + +LA +E A+
Sbjct: 557 TLAPQMDVVYIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGKISIFAPTLASMEKAK 616

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM+      PE  K YKG V K+++ GA V     ++G++H+SQL  ERV +  DVV+ G
Sbjct: 617 EMVLYYDQKPEPGKNYKGVVRKILEVGALVEILPGQEGMLHVSQLDFERVDRVEDVVQLG 676

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
             VWVK +  +  G+I+LS K
Sbjct: 677 QEVWVKCIALEPGGRIRLSRK 697


>gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 689

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/683 (45%), Positives = 452/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG++PGG+++RE+RP E  IL SR+IDR IRPLF K  +NE  V+  VM  D +  P 
Sbjct: 64  YAVGRLPGGFIKREARPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186
           V  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP +   ++  L++ V+GT+DA+L
Sbjct: 124 VCGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++ ED++L+ I+  H E K ++     +     KE  V +SKD  +++ + + 
Sbjct: 184 MVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMKAKVGKEKRVFESKDVPAEIADAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q  +++  ++++F   +   N G++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQESEVRADVLAHFEEIYPD-NMGDVNKAFDAMIKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    + Q +D 
Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P  A FPY LR+
Sbjct: 363 IGIETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEADFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I PD+IR+VIG GGKVIRGI+E+TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRGIIEETGAKIDIEDDGTVFIASVEQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G++ LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685


>gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
 gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
          Length = 732

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 323/699 (46%), Positives = 464/699 (66%), Gaps = 22/699 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H +E  +AGRPL +ETGR+A+Q+ G+ +  +GET+VLA V    + +    FFPLTV Y
Sbjct: 1   MHRIERTFAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSEN-QSPLPFFPLTVEY 59

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+TYA GKIPGG+++RE RP ++EIL +R+IDRSIRPLF + +KNE QV I V+  D E
Sbjct: 60  KEKTYAAGKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQE 119

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +   V+++VAAS AL  S +PF GP+ G +V  + G +VLNP   +   S L+L V+G++
Sbjct: 120 NDADVLALVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSK 179

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA---------ISKLAKMCAKEPIVID 233
           D+++MVE  + ++SE+ VL+++   H+  + +I           + K++ + A+ P  I 
Sbjct: 180 DSIVMVEGGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKMSWVKAEAPEGIT 239

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           ++    ++E  S  I+E L       +K+ R + ++  KK++      E    N  +I +
Sbjct: 240 TR----VKELASGRIREALNQK----DKHTRIEAVERTKKELAEGLLVEFPD-NAKDIGN 290

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++   +R+ +LD ++R+DGR  + VR IS    +L R HGS+LF RG TQA+V  T
Sbjct: 291 LLGDVEYHELRSQVLDTQLRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAAT 350

Query: 354 LGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           LGT +D Q +DS+   G     FM+HYNF P +TGEV  M   SRREIGHG LA RA+  
Sbjct: 351 LGTAKDAQRLDSIKEPGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQG 410

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP  A FPYT+RIVS++ ES+GSSSMA+VCG SL+L DAGVP+   VAG+AMGL+K+G+
Sbjct: 411 VLPDFADFPYTIRIVSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGE 470

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + IL+DI G EDHLG MDFKVAGT  GIT++QMD+KI G+   IM  AL QAK GRLHI
Sbjct: 471 RYAILTDILGTEDHLGDMDFKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHI 530

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM K L+  R  L ++ PR+  + IP D+I  +IG  GK IRGI ++TGA+++++DDG
Sbjct: 531 LGEMDKALAAPREDLSKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAELSVEDDG 590

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+     +E A++M+ +IT  P V + Y+G V  V  FGAFV      + L+H+S+
Sbjct: 591 TVTIAAVGGDSMERAKQMVMAITAEPVVGETYEGTVKTVTAFGAFVEIMPGNEALLHVSE 650

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  ERV K  DVVK+GD V VKL+D D+RG+++LSMK +
Sbjct: 651 MRWERVEKPEDVVKKGDRVTVKLVDRDERGRLRLSMKAL 689


>gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK
           1622]
 gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK
           1622]
          Length = 722

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 313/684 (45%), Positives = 451/684 (65%), Gaps = 17/684 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L +E GR+A+Q+DG+V+  YG+T++L T V  R  KD  DF PLTV YQE+ Y+ G+IPG
Sbjct: 13  LSIEVGRLAKQADGSVVVRYGDTMLLVTAVSAREKKD-IDFLPLTVEYQEKLYSAGRIPG 71

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            Y +RE R TE E L SR++DRS RPLF + Y  ETQ+I +V+  D E+   +  +  AS
Sbjct: 72  SYFKREGRLTEKETLASRLVDRSCRPLFPEGYAYETQIIASVISSDPENEGDIHGITGAS 131

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AAL +S +PF+GP+ G +V  + GQ V NP   + +Q  LDL ++ ++ A++MVE  A +
Sbjct: 132 AALWVSDIPFDGPIAGIRVGRVGGQLVANPTAKQREQSDLDLVMAVSRKAIVMVEGGAEE 191

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKDFSKLEEEMSQMI 248
           +SE  ++ A+ FG    +P ++   +L +   K+      P  +D    +K+ E    + 
Sbjct: 192 VSEADMVAALDFGFTTAQPALDLQDELRRELNKQVRSFEKPAAVDEGLRAKVRE----LA 247

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQAKVVR 304
            + ++    I EK  R + +   KK+ ++    +    ++   E    +V ED++ + +R
Sbjct: 248 MDGIKAGYGIKEKGARYEALGKTKKEALAKLKEQLGDGYTPLVEKHAKAVVEDLKYEHMR 307

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + ++   R+  R  + VR I+ +VG+L RTHGS++F RG+TQA+VV TLGT +DEQ ++
Sbjct: 308 EMTVNGG-RIGDRGHDVVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSDDEQRLE 366

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L G     FM+HYNF P +  E   +  P RRE+GHG LA RA+  ++P++  FPYT+R
Sbjct: 367 MLGGMAFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMVPKSESFPYTVR 426

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VS+I ES+GSSSMA+VCG +LALMDAGVP+  PVAGIAMGLVK+GD   ILSDI GDED
Sbjct: 427 LVSDILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAILSDILGDED 486

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GIT++QMD+KI G++  IM  AL+QA++GRLHIL EM K L+ESR 
Sbjct: 487 HLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKTLAESRK 546

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ ++ PR+  + I P+ I+NVIG GGKVI+ I+ +TGA +NI+D G V IAS++   ++
Sbjct: 547 EISQYAPRITTIQIRPEFIKNVIGPGGKVIKDIIARTGAAINIEDSGRVDIASANGEAVK 606

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA  MI+++T   E+ KIY G V K+ +FGAFV      DGL+HIS+LS +RV   SDV+
Sbjct: 607 AAIAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSVSDVL 666

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
            EGD V VK++  D  GKI+LS K
Sbjct: 667 NEGDEVLVKVVSIDKTGKIRLSRK 690


>gi|303233686|ref|ZP_07320340.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           BVS033A4]
 gi|302495120|gb|EFL54872.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           BVS033A4]
          Length = 714

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/685 (43%), Positives = 457/685 (66%), Gaps = 2/685 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT +++E+ 
Sbjct: 6   EYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +++P 
Sbjct: 66  YSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ + S L+L V+GT+DA++
Sbjct: 126 ILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTKDAIM 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEEEMS 245
           MVE   N ++E  VL AI+  H E K + E I  + K C K +   I  +   +L+EE+ 
Sbjct: 186 MVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELDEEVK 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               EDL+      +K  R   I+ LK+ +V +F  ++      ++ ++++D++   VR 
Sbjct: 246 SFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFIEKYDESIASKVSTIYDDLEKSEVRR 305

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q +D 
Sbjct: 306 LILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDG 365

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPYT+R+
Sbjct: 366 LIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRV 425

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K+ D+ +ILSDI G EDH
Sbjct: 426 VSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSDIQGLEDH 485

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE   +
Sbjct: 486 LGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISEPNKE 545

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +    + 
Sbjct: 546 ISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTESAQR 605

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  DV+K
Sbjct: 606 AIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVEDVLK 665

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
           E D + VKL+D DD+GK+ LS K +
Sbjct: 666 ENDEIMVKLMDIDDQGKMTLSRKAL 690


>gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
 gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
          Length = 703

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 312/708 (44%), Positives = 457/708 (64%), Gaps = 27/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I     +F K
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENI-----EFEK 239

Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290
              E+  ++K        E L+ +     K  R + +D L+++++  F+ E +    E E
Sbjct: 240 --PEVLPLVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEE 297

Query: 291 IV--------SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +         + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF 
Sbjct: 298 LPEDIILEFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 357

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ++ + TLGT+EDEQ +D L       F +HYNF P + GEV RM +P RRE+GHG
Sbjct: 358 RGETQSLAITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMSSPGRRELGHG 417

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI
Sbjct: 418 SLAERALRYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGI 477

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL 
Sbjct: 478 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 537

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA + RL IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG
Sbjct: 538 QAHQARLEILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTG 596

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           + V+I DDG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     
Sbjct: 597 STVDITDDGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPG 656

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+HIS++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 657 KEGLLHISEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 703


>gi|302380540|ref|ZP_07269005.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311483|gb|EFK93499.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 714

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/689 (43%), Positives = 457/689 (66%), Gaps = 2/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT ++
Sbjct: 2   IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +
Sbjct: 62  EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           ++P +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ + S L+L V+GT+
Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLE 241
           DA++MVE   N ++E  VL AI+  H E K + E I  + K C K +   I  +   +L+
Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           EE+     EDL+      +K  R   I+ LK+ +V +F  ++      ++ ++++D++  
Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFVEKYDESIASKVSTIYDDLEKS 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q
Sbjct: 302 EVRRLILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 VLDGLIDQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K  D+ +ILSDI G
Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKADDNVVILSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE
Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++ ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +  
Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  
Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+KE D + VKL+D DD+GK+ LS K +
Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKAL 690


>gi|328957265|ref|YP_004374651.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
           17-4]
 gi|328673589|gb|AEB29635.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
           17-4]
          Length = 717

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 296/688 (43%), Positives = 449/688 (65%), Gaps = 8/688 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L++E G++A+Q++GA L  Y +TVVL+  V  +  KD  DFFPLTVNY E+ Y+
Sbjct: 25  EWAGRTLEIEVGQLAKQANGAALIRYNDTVVLSAAVASKKAKD-VDFFPLTVNYDEKMYS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE+RP+E   L +R+IDR IRP+F++ ++NE Q+   VM  D   SP   
Sbjct: 84  VGKIPGGFIKREARPSEAATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAFS 143

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M  +S +L +S +PF GP+    V  ++G+Y++NP L+++  S + L V+GT+DA+ MV
Sbjct: 144 AMFGSSLSLAISDIPFNGPIASVDVGRVDGEYIINPTLEQEALSDIHLTVAGTKDAINMV 203

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247
           E  A ++SE+ +L A++FGH   + ++    ++     KE + I      + LE+E++  
Sbjct: 204 ESGAAEVSEEDMLGALMFGHEAIQELVAFQEEIVAAVGKEKMTIQLLQIDADLEKEVNDA 263

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EIVSVFEDIQAKV 302
            +  +  +    EK  R + I+ +K++ ++++  ++   +E      E+  + ED++   
Sbjct: 264 FQTKMIAAIQTEEKLAREENIEAVKEEAMTFYEEKYQDNDEAKRINKEVKQIVEDMEKNE 323

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   K+R DGR  + +R +++++GLL R HGS LF RG TQA+ + TL    + Q 
Sbjct: 324 VRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSIATLAPLGEHQI 383

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L       F+ HYNF   + G       P RREIGHG L  RA+  V+P    FPY 
Sbjct: 384 IDGLGIENSKRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALGERALAQVIPSEEDFPYM 443

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLVK+G+++ +L+DI G 
Sbjct: 444 IRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENYTVLTDIQGL 503

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI++ I+  AL QAK+ R+ IL+E+   ++E 
Sbjct: 504 EDHLGDMDFKVAGTSKGITALQMDIKIEGITQQILEEALTQAKKARMEILDELISTIAEP 563

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
             +L  + P++E+M I P++I+ VIG GG  I  I+E+TG K++ID +G + IAS   A 
Sbjct: 564 HEELSAYAPKIEMMQIKPEKIKVVIGRGGDQINAIIEETGVKIDIDQEGNISIASEDAAM 623

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I  A+E+I  +T   EV KIY G+V ++  FGAFV     +DGLVHIS+L+ ERVAK  D
Sbjct: 624 IRRAKEIIEELTKDIEVGKIYSGKVKRIEKFGAFVEIAKGKDGLVHISELANERVAKVED 683

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  G+ + VK+++ D +G+I LS KV+
Sbjct: 684 VLTLGEVMDVKVIEIDKQGRINLSRKVL 711


>gi|149924682|ref|ZP_01913032.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
           SIR-1]
 gi|149814439|gb|EDM74030.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
           SIR-1]
          Length = 698

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 320/680 (47%), Positives = 435/680 (63%), Gaps = 18/680 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +  ETGRIA+Q++  V+ T GET VL      R  KD   F PLTV ++    A GKIPG
Sbjct: 15  IGFETGRIAKQAN-TVIMTLGETAVLVAATMSREPKD-LPFMPLTVEFRSANAAAGKIPG 72

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           GY +RE RPT  EIL+ R+ DR IRPLF K Y+ +TQ++  V+ +DL++ P V++M  AS
Sbjct: 73  GYFKREGRPTVEEILVCRLTDRPIRPLFPKGYRYDTQIVSQVLSNDLQNEPDVLAMTGAS 132

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AALM+S  P+ GPV G +V  ++G+ V  P  D+  Q  L+L VS ++DA++MVE  A  
Sbjct: 133 AALMISPAPWAGPVAGIRVARVDGELVAFPTFDQIQQADLNLIVSCSRDAIVMVEAGAEG 192

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           +SE  ++DA++F   +  P+IEA  +L       KM   +P+V ++     +++  S MI
Sbjct: 193 ISESDMIDALMFAKEQSLPLIEAQERLRARAGKPKMEWVDPVVDEAFRGQVMDKARSAMI 252

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           +     +  I  K+ R   I  +KK MV  F  E       EI +    ++  +VR   +
Sbjct: 253 E-----ALAIRGKHDRHAAISAVKKSMVEAFGDERKD----EISAAVGKLEKTLVREATV 303

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++  R+DGR    +R +  +V   +R HGS+LF RG+TQAI   TLGT  D Q +D++ G
Sbjct: 304 NEGRRVDGRGLTDIRALHIEVHPFERPHGSALFQRGETQAITTTTLGTERDAQRLDTIRG 363

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
              N F++HYNF P   GE   M   SRRE GHG LA RA+ PV+P T  FPYTLR+VS+
Sbjct: 364 DVNNTFLLHYNFPPYCVGEARPMRGTSRREQGHGALAHRALTPVMPDTESFPYTLRVVSD 423

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
            TES+GSSSMA VCG  L+LMDAGVPI  PVAGIAMGL+++GD   +LSDI GDEDHLG 
Sbjct: 424 TTESNGSSSMAAVCGGCLSLMDAGVPIKAPVAGIAMGLIQEGDKIAVLSDILGDEDHLGD 483

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFK  GT  GITA+QMD+KI G++ +I+  AL+QA+ GRLHIL  M + L E R  +  
Sbjct: 484 MDFKCCGTKDGITALQMDIKIHGLTRDILETALEQARAGRLHILEAMLEKLPEPREDISR 543

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           + PRVE + +  DQIR++IG GGKVIRGI EQTG  +NI+DDG V +AS+ +  I  A+ 
Sbjct: 544 YAPRVETVWVKIDQIRSIIGPGGKVIRGIQEQTGVVININDDGRVTMASADMDAIAKAKA 603

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           +I  +T  PE  + Y G V +V+DFGAFV      DGLVHIS+L   RV + +DVV EGD
Sbjct: 604 IIEGLTFEPEPGQYYNGVVKRVVDFGAFVEIMPGTDGLVHISELENRRVDRVTDVVSEGD 663

Query: 669 TVWVKLLDFDDRGKIKLSMK 688
            V VK+++ DD+G+I+LS K
Sbjct: 664 DVVVKVVNIDDQGRIRLSRK 683


>gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 736

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 306/681 (44%), Positives = 452/681 (66%), Gaps = 12/681 (1%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           +E G++A Q+ GAV   +G+TVVL T  + ++L    DF PLT NYQE  Y+ G++PG Y
Sbjct: 20  IEHGKLALQASGAVTVQWGDTVVLVTATH-QALDRVVDFLPLTCNYQEMLYSAGRVPGNY 78

Query: 78  LRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
            RRE  RP+E+E L SR++DR IRPLF K   NE QVI  V+  D E S  +++M+ AS 
Sbjct: 79  FRREVGRPSEHETLTSRLMDRPIRPLFPKGCTNEIQVIATVISSDKERSADILAMLGAST 138

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQL 195
           AL +S +PF GP+   +V Y +G+++LNP   E   S L++ ++G++DAV+MVE  A  L
Sbjct: 139 ALHISEIPFAGPIAAIRVGYRDGKFLLNPTATELATSQLNMILAGSRDAVVMVEGGAQFL 198

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLRV 254
           SED++ +A+ +GH +  P+++A  +L K   +E   V    + ++L E ++ +    L  
Sbjct: 199 SEDIMTEAVAWGHAQLGPLLDAQEELRKELGREKFTVTPPTEDTELIEAVAGLATAPLTE 258

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVRTVMLD 309
           +  +P K  R      +K+ ++    ++++   E     GEI+   E ++ K+VR  ++ 
Sbjct: 259 ALAVPGKMDRRDAKKKVKQNLMEALMAKYAETPERIRGVGEIM---EKLEKKIVRQRIMT 315

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGRD  TVR +  +VG L RTHGS++F RG+T+A+   TLG+  DEQ +++L+G 
Sbjct: 316 DKIRIDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLGSTRDEQRIETLAGD 375

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
               F+MHYNF P + GE   + AP RREIGHG L+ RA++PVLP+   FP+T+R+VS+I
Sbjct: 376 TSRRFLMHYNFPPYSVGEARMLRAPGRREIGHGALSERALNPVLPEPDAFPFTIRVVSDI 435

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMA+VCG +LALMDAGVPI  P+AGIAMGL+K+GD++++L+DI GDEDHLG M
Sbjct: 436 MESNGSSSMASVCGGTLALMDAGVPIKTPIAGIAMGLIKEGDEYLVLTDILGDEDHLGDM 495

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAG+  G+T++QMD+KI GI   +M  AL QAK  R+HIL++M  +++  R +L +F
Sbjct: 496 DFKVAGSRDGVTSIQMDIKIAGIPAEVMQKALHQAKDARVHILDQMEALIAAPRGELSKF 555

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P+++I+ I  D+IR VIG GGK I+ I E T A ++IDD G + I +     +  AREM
Sbjct: 556 APQMDIVHISQDKIREVIGPGGKNIKAICEATKADIDIDDSGKISIFAPDSVSLAKAREM 615

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +       E+NK Y G V K+MDFGAF+      +GL HISQL+ +RV   +DVV+EGD 
Sbjct: 616 VLYYDQKAELNKDYDGIVKKIMDFGAFIEILPGLEGLCHISQLARDRVNVVTDVVQEGDA 675

Query: 670 VWVKLLDFDDRGKIKLSMKVV 690
           + V+++D +  G+IKLS K +
Sbjct: 676 IRVRVIDIEPSGRIKLSRKAI 696


>gi|325473489|gb|EGC76684.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
           F0402]
          Length = 698

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/683 (43%), Positives = 464/683 (67%), Gaps = 20/683 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++G++ A Y  + +LAT+      ++G D+ PLTV+Y E+ YA GKIPG
Sbjct: 14  LILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RP + EIL+SR+IDR +RPLF+K +  E Q++   +  D+ + P +++++A+S
Sbjct: 74  GFIKREGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAVIASS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AA+ +S +PF+GPV  A+V Y NG+Y++NP   + +   +++ V+GT++ + MVE  AN+
Sbjct: 134 AAVHISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIVVAGTKEGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEEEM--SQMIKE 250
           +SE V+L A+   H   K + +    L ++  KE  P+V        LE E+   Q I +
Sbjct: 194 VSEAVMLTALEKAHEMIKALCKMQEDLRELAGKEKLPLV-------PLEAELENKQAIYD 246

Query: 251 D----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRT 305
           +    L  + ++  K  R ++ D +KK++   ++ +     + ++  ++FE+++  ++RT
Sbjct: 247 EAFPRLSKTLYLSTKMERREESDKVKKELAEKYAEQLEDEIQLKLFNALFEEMEYNILRT 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +LDK +R+DGR ++ +R I+ ++G+L R HGS++F RG+TQ++ VVT+GT  DEQ  D 
Sbjct: 307 NILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDD 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G +R +F++HYNF P + GEV R+G   RREIGHG LA R+++P++P+  +FPYT+R+
Sbjct: 367 IEGDRRENFILHYNFPPFSVGEVGRLGT-GRREIGHGNLAHRSLYPMVPEREKFPYTVRV 425

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDED 484
           VSE+ ES+GSSSMATVC  +L+++ AGVP+ KPVAGIAMGL+ +G+D + ILSDI G+ED
Sbjct: 426 VSEVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITEGNDRYAILSDILGEED 485

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  GIT  QMD+KI G+S  IM  AL QAK GR+HIL  M++ +S    
Sbjct: 486 HLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQCISAPNA 545

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI-ASSSLAEI 603
           +L ++ PRVE+M IP D+I  +IG GGK ++ I ++    +N ++DGTV I      +++
Sbjct: 546 ELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISDKYNVTINTENDGTVTIYGKDGTSDL 605

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A+ +++ IT  PEV  +Y G V K+MDFGAFV     ++GL HIS+LS  RV K SDV
Sbjct: 606 KGAKSIVKGITSDPEVGMVYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRSRVEKVSDV 665

Query: 664 VKEGDTVWVKLLDFDDRGKIKLS 686
           +KEG  + VKLL+ D  G++ LS
Sbjct: 666 LKEGQEIPVKLLEIDKLGRLNLS 688


>gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName:
           Full=Polynucleotide phosphorylase 4; Short=PNPase 4
 gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 704

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/693 (45%), Positives = 459/693 (66%), Gaps = 11/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   + E AG+ L +E G+ A Q+ G+ +  YG+T VL      +S ++G DFFPL+V+Y
Sbjct: 2   IKQFQTELAGKTLHVEIGKYAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE+RP+E  +L SR+IDR IRPLF K Y+NE QVI  VM  D +
Sbjct: 62  EEKLYAVGKIPGGFIKREARPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            +P +V+M+ +S AL +S +PF GP     V  +NG++VLNP  D+   S +DL VSGT+
Sbjct: 122 YAPDIVAMIGSSIALSISDIPFGGPTGSVNVGLVNGEFVLNPTSDQRAISDIDLVVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237
           DA++M+E  AN+++ED +LDA++F H E K ++  I ++     K     +   ID    
Sbjct: 182 DAIMMIESGANEVTEDQMLDALMFAHEEIKTIVAFIEEIVAEVGKPKQEVQLFAIDET-- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L+ E+    K+ +  +    +K  R +++D++KK+++ +FS ++ +  +  IV V   
Sbjct: 240 --LDMEVRVFAKDKIVTAMKTFDKMERNERLDNVKKEILVHFSKQYENELKS-IVEVINS 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  +  R ++   KVR D R  + +R I+++VG+L RTHG+ LF RG TQ + V TLG  
Sbjct: 297 IIKEQFRYMITHDKVRPDERALDEIRPITSEVGILPRTHGTGLFTRGQTQVLTVATLGAL 356

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L   +   +M HYNF P + GE   +  P RREIGHG LA RA+ P++P   
Sbjct: 357 GEVQILDGLGEEESKRYMHHYNFPPYSVGEAKFLRGPGRREIGHGALAERALLPMVPSQD 416

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSE+  S+GSSS A+VCGS+LAL+DAGVPI   VAGIAMGLVK+ D   ILS
Sbjct: 417 DFPYAIRLVSEVLSSNGSSSQASVCGSTLALLDAGVPIKDMVAGIAMGLVKENDKIAILS 476

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKVAGTD GITA+QMD+KI GI ++I+  AL+QA+ GRLHIL++M K
Sbjct: 477 DIQGMEDALGDMDFKVAGTDKGITAIQMDIKIKGIHKDILKDALEQARVGRLHILDKMKK 536

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + + R +L  F PRV  M I PD+IR+VIG GGK I  I+++TG K++ID+DGT+ IA+
Sbjct: 537 AIDKPRPELSPFAPRVLKMKIHPDKIRDVIGSGGKTINRIIDETGVKIDIDNDGTIFIAA 596

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S   +E A  +I +I   PEV + Y G+V+K+M+FGAF+     ++GL+H+S ++ ERV
Sbjct: 597 ESQEAVEKAIIIIENIIKDPEVGQNYTGKVIKIMNFGAFLEILPGKEGLLHVSNIAHERV 656

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  DV++ G  + VK+++ D +GKI LS K +
Sbjct: 657 NKVEDVLEVGQEIEVKVMEIDQQGKINLSRKAL 689


>gi|269926894|ref|YP_003323517.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790554|gb|ACZ42695.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 733

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 329/696 (47%), Positives = 458/696 (65%), Gaps = 13/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E  WAGR L +ETGRIA Q+ GAVL  YG+TVVL T V   +  +  DFFPLTV Y
Sbjct: 2   ISKFETIWAGRKLSIETGRIAGQAHGAVLVQYGDTVVLTTAVRADAPSN-MDFFPLTVQY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG++RRE RP+EN  L +R+ DR +RPLF K YK E Q+I  V+  D +
Sbjct: 61  EERMYAAGKIPGGFIRREGRPSENATLAARLTDRPLRPLFPKGYKYEVQIITTVLSTDQQ 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           + P ++S++  SAAL +S +PF GPV  A+V YI+G+Y+LNP  D+ + SL DL V+GT+
Sbjct: 121 NEPDLLSIIGGSAALSISDIPFLGPVGAARVGYIDGEYILNPTADQREESLLDLTVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DAV+MVE  A++L E V+L A+ FGH   +  I+   +L  +  K        D  +++E
Sbjct: 181 DAVIMVEGSAHELPESVMLGAVEFGHRMLQDTIKLQEQLVAVAGKPK---HHFDVPEVDE 237

Query: 243 EMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVF 295
           E +  ++E     L+ +   P+K +R + I ++K  +++   S+  +      G +   F
Sbjct: 238 EFTARVREWLGDKLKEAVNNPDKVLREEAIAEVKANLIAAMISDDVADPADLTGAVAREF 297

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E +  + VR  +L++ VR DGR  + +R +SA+VGLL RTHGS+LF RG TQ I VVTLG
Sbjct: 298 ETLLKEEVRNRILNEGVRPDGRGPKEIRPVSAEVGLLPRTHGSALFTRGQTQIISVVTLG 357

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           TR +EQ +D L   +   FM HYNF P +TGE+  +  PSRR+IGHG L  R++ PV+P 
Sbjct: 358 TRREEQILDDLGMEESKRFMHHYNFPPYSTGEIRPLRGPSRRDIGHGALVERSLLPVMPS 417

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFI 474
             +FPYT+R+VSE+  S+GSSSM +VCGS+LALMDAGVPI  PV+G+AMGLV   D  ++
Sbjct: 418 EEEFPYTVRVVSEVVSSNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTGPDGKYV 477

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT+ G+T +QMD+K  GI+ +IM  A +QA+ GR++IL +
Sbjct: 478 ILTDIQGIEDALGDMDFKVAGTEKGVTGLQMDIKTTGITFDIMREAFEQAREGRMYILGK 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + E R  L  + PR+  M I P++I  VIG GGK IR I + TG++++I+DDGT+ 
Sbjct: 538 MLEAIPEVRSTLSGYAPRILTMKINPEKIGAVIGPGGKTIRAITDATGSQIDIEDDGTIL 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S++    E AR  I  +T   EV ++Y G+VV +M +GAFV     +DGLVHIS+LS 
Sbjct: 598 IYSTNAEGAEEARRRIEMLTRDIEVGQVYTGKVVGIMPYGAFVELAPGKDGLVHISELSD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            RV +  DVVK GD + V + D D  GKI LS + V
Sbjct: 658 TRVNRVEDVVKLGDEITVMVTDIDRNGKISLSRRAV 693


>gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076]
          Length = 701

 Score =  598 bits (1542), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 308/693 (44%), Positives = 445/693 (64%), Gaps = 14/693 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H VE++   R + LETG++A+Q++GAV+   G+ VVL T       K    FFPLTV+Y+
Sbjct: 3   HIVEVDLGDRKITLETGKMAKQANGAVVVRSGDAVVLVTACMADQPKPSAGFFPLTVDYR 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E TYA GKIPGG+++RE R +E E+L  R+IDR IRPLF + + NETQ+I  V+  D E 
Sbjct: 63  EYTYAAGKIPGGFIKREGRLSEKEVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADPEQ 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P+ +++V  +AAL +S +PF+  + G +V   +GQY  NP   E + S L++ V+GT++
Sbjct: 123 DPNSLAIVGTAAALAISDIPFQYVMAGVRVGMRDGQYTANPTYTEGRASKLNIVVAGTEE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFS 238
            ++MVE  A ++SE  VL AI FGH  CK +   I +L K+C K        V+D   ++
Sbjct: 183 GIVMVEAGAQEVSEAEVLGAIEFGHECCKKIAAGIRQLMKLCGKTKREFVSPVLDETIYA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E++    + + L       EK      +  +KK+ +     E            F+ +
Sbjct: 243 EVEKQARVDLTDALNTEKH--EKLASYALVASVKKRTIEALPDEQKEQG----AKCFDAL 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++ R  ML K  R DGR+ + +R I+ + G+L R HGS+LF RG+TQA+V VTLGT++
Sbjct: 297 KERIFRDDMLKKHRRPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKD 356

Query: 359 DEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           DEQ ++ L  G     FM+HYNF P + GEV  M    RREIGHG LA RA+  ++P   
Sbjct: 357 DEQRIELLEPGEASKRFMLHYNFPPFSVGEVGFMRGAGRREIGHGALAERALTALIPGED 416

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VS+  ES+GSSSMA +CG SLALM AGVP++  V G+AMGLV +G D+ IL+
Sbjct: 417 KFPYTMRVVSDTLESNGSSSMAAICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAILT 476

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI+G EDH G MDFKVAGT  GIT MQMD+K+  I+  IM  AL+QA+RGRL IL++M +
Sbjct: 477 DIAGAEDHYGDMDFKVAGTRDGITGMQMDIKVPNITTAIMKEALEQARRGRLFILDKMYE 536

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + ++   + ++ PR+  + IP D+IR+VIG GGKVIRGI+EQTG K++++DDGT+ +AS
Sbjct: 537 AMPQANTAISQYAPRIYTLHIPTDKIRDVIGPGGKVIRGIIEQTGVKIDVEDDGTIHVAS 596

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A    A ++I  +T   E+ K Y G+VV+++DFGAFV      DGL+HIS+++  R+
Sbjct: 597 ADEASANKAIQIISDLTATAEIGKTYLGKVVRLVDFGAFVEIFPGTDGLLHISEIAENRI 656

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               D +KEGD + VK L  +   KIKLS K V
Sbjct: 657 KDVRDELKEGDQILVKCLALEGN-KIKLSRKAV 688


>gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 807

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/682 (45%), Positives = 451/682 (66%), Gaps = 13/682 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L +E GR+A+Q+DGAV+  YG+T++L T V  R  KD  DF PLTV YQE+ Y+ G+IPG
Sbjct: 98  LSIEVGRLAKQADGAVVVRYGDTMLLVTAVSAREKKD-VDFLPLTVEYQEKLYSAGRIPG 156

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            Y +RE R TE E L SR++DRS RPLF   Y  ETQ+I +V+  + E+   +  +  AS
Sbjct: 157 SYFKREGRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEPENEGDIHGITGAS 216

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AAL +S +PF GP+ G +V  ++G++V NP L + +Q  +DL ++ +++A++MVE  A +
Sbjct: 217 AALWVSDIPFNGPIAGIRVGRVDGKFVANPTLKQREQSDIDLVMAVSREAIVMVEGGAEE 276

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE---D 251
           +SE  ++ A+ FG    +P ++   +L +   K   V   +  + ++E +   ++E   D
Sbjct: 277 VSEADMVAALEFGKQAVQPALDIQDELRRELGK--TVRSYEKLASIDEGLKAKVRELAWD 334

Query: 252 LRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQAKVVRTV 306
             V  + I EK  R + +   KK+ ++    +    ++   E     V ED++ + +R +
Sbjct: 335 GIVKGYGIKEKAARYESLGKAKKEAIAKLKEQLGDAYTPAVEKHAKQVVEDLKYEHMRQL 394

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
            +D   R+  R    VR I+ +VG+L RTHGS++F RG+TQA+VV TLGT EDEQ ++ L
Sbjct: 395 TVDGG-RIGARGHAEVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSEDEQRLELL 453

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G     FM+HYNF P +  E   +  P RRE+GHG LA RA+  + P++  FPYT+R+V
Sbjct: 454 GGMVFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMAPKSDSFPYTIRVV 513

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           S+I ES+GSSSMA+VCG +LALMDAGVPI  PVAGIAMGLVK+GD   ILSDI GDEDHL
Sbjct: 514 SDILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEGDKVAILSDILGDEDHL 573

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT  GIT++QMD+KI G++  IM  AL+QA++GR+HIL EM K ++E R ++
Sbjct: 574 GDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRIHILGEMLKTMAEPRKEI 633

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            ++ PR+  + I P+ I+NVIG GGKVI+ I+ +TGA +NI+D G V IAS++   +++A
Sbjct: 634 SQYAPRITTIQIRPEYIKNVIGPGGKVIKDIIARTGAAINIEDSGRVDIASANSDSVKSA 693

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
             MI+++T   E+ KIY G V K+ +FGAFV      DGL+HIS+LS +RV   SDV+KE
Sbjct: 694 IAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSVSDVLKE 753

Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688
           GD V VK++  D  GKI+LS K
Sbjct: 754 GDEVLVKVVSIDKTGKIRLSRK 775


>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
 gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
          Length = 702

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 312/697 (44%), Positives = 458/697 (65%), Gaps = 17/697 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +V  V +      L  ETG+IA+Q+ G V A Y  + V+ATV   +   +  D+ PL+V
Sbjct: 1   MEVKKVSVRIGDADLVFETGKIAKQTSGTVYAHYEGSAVIATVCCGKEPNEALDYVPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y E+ YA GKIPGG+L+RE+RP + EIL+SR+IDR +RPLF K +  E QV+  V+  D
Sbjct: 61  EYNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQVVPTVVSSD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
           + ++P ++++ AASAA+ +S +PF GP+   ++  ++G YV+NP   + ++ SLD+ V+G
Sbjct: 121 MNNTPDIIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSLDIVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFS 238
           T+D + MVE  A ++SE+V+L+AI         + +A  +L K+  KE  P+V  + D S
Sbjct: 181 TRDGITMVEGGAKEVSEEVMLEAIATAQPYITKLCDAQLELKKIAGKEKLPVVTLTVDLS 240

Query: 239 KL---EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVS 293
            L    E    +IK+    + F+  K  R   +  ++ ++   F       S  +G++ S
Sbjct: 241 WLAPVREYAYPLIKQ----ASFVKGKMERYAALAKVQGEVKEKFQDVIAEDSKRDGQLSS 296

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +FED++ +++R  +L+   R DGR  + +R I+ +VGLL RTHGS+LF RG+TQA+ V T
Sbjct: 297 LFEDLEYEILRASILNDGKRTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTT 356

Query: 354 LGTREDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           LGT  DEQ  D++ G +  + FM+HYNF P + GE  R+ +  RREIGHG LA+RA+  +
Sbjct: 357 LGTASDEQMFDTIDGEKSFSSFMLHYNFPPYSVGECGRL-STGRREIGHGHLAQRALEAI 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P    FPYT+R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI KPVAGIAMGL+ +G D
Sbjct: 416 VPNKESFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGAD 475

Query: 473 F---IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           +   ++LSDI G+EDHLG MDFKVAG+  GITA QMD+KI G++  IM  AL+QAK+GR+
Sbjct: 476 YSKYVVLSDILGEEDHLGDMDFKVAGSRDGITAFQMDIKIAGVTPEIMKKALEQAKQGRM 535

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL+ M   LS SR ++ E+ P++  M +  ++I  VIG GGK I+ I  Q+GA+VNI D
Sbjct: 536 HILSIMEGALSNSREEISEYAPKILTMKVDEEKIGAVIGTGGKTIKAIASQSGAEVNIAD 595

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV I     A  + A+E+++SI + PEV +IY+G V ++MDFGAF+     ++GL HI
Sbjct: 596 DGTVTIYGRDNASAQLAKELVKSIVEEPEVGRIYEGTVKRIMDFGAFIEILPGKEGLCHI 655

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           S+L+  RV    DV+K G  V VKL++ D + ++ LS
Sbjct: 656 SKLAKTRVQNVEDVLKVGQVVPVKLIEIDRQNRLNLS 692


>gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
 gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
          Length = 718

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 306/691 (44%), Positives = 450/691 (65%), Gaps = 10/691 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +++ G+ L +E G +A+Q++GAVL  Y +TV+L+TVV  +  K+  DFFPLTV Y+E+ Y
Sbjct: 8   MDFYGKNLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKN-VDFFPLTVTYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE Q +  V+  D +++P +
Sbjct: 67  SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEM 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187
            +M+ AS AL +S +PF GP+ G  V  ++G++++N   ++ + SL +L V+GT+DA+ M
Sbjct: 127 AAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLINLEVAGTKDAINM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE +A ++SE+V+L+A++FGH + K +I    K+ + C KE I I   + +  L EE++ 
Sbjct: 187 VEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKIEIPLFELNNDLVEEVAV 246

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300
             K ++  +  IP K  R   IDDL  ++   + +      E       ++  +  D++ 
Sbjct: 247 RAKAEMAAAVSIPGKLERYGAIDDLIAQVTEEYDNREYENEEIKADVMKQVGIILHDLEK 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + K+R DGR  + +R + +Q+ LL R HGS+LF RG+TQ + V TLG   + 
Sbjct: 307 DEVRRLITEDKIRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEH 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L    +  FM HYNF P + GE  RMGAP RREIGHG L  RA+  V+P    FP
Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVIPSEEAFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSS A++C S++ALM AGVPI  PVAG+AMGLVK GD + IL+DI 
Sbjct: 427 YTIRVVSEVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDAYTILTDIQ 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGTD+GI A+QMD+KI GI++ I+  AL QAK  R  I+  M   ++
Sbjct: 487 GMEDHLGDMDFKVAGTDAGICALQMDIKIDGITKEILQEALAQAKVARKQIMANMMDAIA 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSS 599
             R +L  + P+V++M I PDQI+ VIG GGK I  I+EQ+ G K++I+ DGTV I    
Sbjct: 547 APRDELSPYAPKVQMMKIEPDQIKAVIGQGGKTINEIIEQSDGVKIDIEQDGTVVIYHYD 606

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A I  A E+I  I    +V ++Y G+VV+V D  AF++     DG +HIS  + ER  K
Sbjct: 607 QAAINKAVELIEKIVKKAQVGEVYDGKVVRVEDNYAFINLFDGTDGFLHISDYAYERTKK 666

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +V+K GD + VK+   DD+GK+ +S K +
Sbjct: 667 MGEVIKLGDIIKVKVTKVDDKGKVNVSRKAL 697


>gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
 gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
          Length = 760

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 311/685 (45%), Positives = 450/685 (65%), Gaps = 10/685 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G+P+  ETG++A Q+ GAV    G+++V A        ++G DFFPL+V Y+ER YA G
Sbjct: 13  GGQPVVFETGKLAGQAGGAVTVRLGDSMVFAAATMSPEPREGIDFFPLSVEYEERLYAGG 72

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG Y RRE +P+   IL +R+ DR +RPLF+K  +NE QVI+  +  D E+   ++ +
Sbjct: 73  RIPGSYFRREGKPSTEAILTARLTDRPLRPLFNKEMRNEVQVILFSLSADQENPLDILCI 132

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
            AASAALM+S +P+ GPV   ++  I+GQ+++NP   + + S LDL ++GT+DA+LMVE 
Sbjct: 133 NAASAALMISDIPWGGPVGAVRIGRIDGQFIINPTFSQMEISDLDLRIAGTRDAILMVEC 192

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIV-IDSKDFSKLEEEMS 245
            A +++EDV++ A+ FGH   +P+I+A  ++A    K     P+  +D     ++ E+ +
Sbjct: 193 GAKEVAEDVMVQALQFGHEALQPLIDAQLQMAAEVGKPKREVPLFPLDPTLVDQVYEKAA 252

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
             ++  L       +K    + +D L+K++V   ++   +  E  + + F ++  KVVR 
Sbjct: 253 GALEAALDAPH---DKAQLNEAVDALQKQIVEEMAAGDETLVE-PLKNAFTEVYKKVVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L+K +R D R    +R I  +VG+  R HGS LF RG+TQ + + TLGT  + Q +DS
Sbjct: 309 RILEKGIRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATLGTPREAQELDS 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L   +   +M HYNF P +TGEV  +   SRREIGHG LA RA+ PV+P   +FPYTLR+
Sbjct: 369 LVPIETKRYMHHYNFPPYSTGEVKPLRGQSRREIGHGALAERALEPVIPPEDEFPYTLRL 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+  S+GS+SMA+VCGS+LALMD GVPI  PVAG+AMGL+K+GD+ +IL+DI G EDH
Sbjct: 429 VSEVLSSNGSTSMASVCGSTLALMDTGVPIKAPVAGVAMGLIKEGDNAVILTDIQGLEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT+ GITA+QMD+KI GI+  +M  AL QA+  RL IL +M  V+   R +
Sbjct: 489 LGDMDFKVAGTEKGITALQMDIKIKGITPELMSRALAQAREARLDILKKMLAVIPAPRPE 548

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L    PR+ I+ +P D+I  +IG GGK+IR + E+T  +++I+DDGTV IAS+  A   A
Sbjct: 549 LKPHVPRITILKVPVDKIGAIIGPGGKLIRALQEETNTRIDIEDDGTVYIASTDKAGEMA 608

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           ARE I ++T+ P+V +IY G+VV+V DFGAFV      DG+VHISQL +ERV +  DVV 
Sbjct: 609 ARERIEAVTETPQVGRIYTGKVVRVTDFGAFVEILPNVDGMVHISQLDSERVNRVEDVVN 668

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD V V + + D  GKI+LS + V
Sbjct: 669 VGDEVTVMVTNIDPDGKIRLSRQAV 693


>gi|254303468|ref|ZP_04970826.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323660|gb|EDK88910.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 699

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 309/701 (44%), Positives = 452/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSAGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINMPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +   
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLP 240

Query: 240 LEEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292
           L +  +     E L+ +     K  R   +D L+++++  F  E +    E E+      
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDVIL 300

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG+ V+I D
Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7]
 gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7]
          Length = 714

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 306/691 (44%), Positives = 450/691 (65%), Gaps = 10/691 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +++ G+ L +E G +A+Q++GAVL  Y +TV+L+TVV  +  K+  DFFPLTV Y+E+ Y
Sbjct: 8   MDFYGKNLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKN-VDFFPLTVTYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE Q +  V+  D +++P +
Sbjct: 67  SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEM 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187
            +M+ AS AL +S +PF GP+ G  V  ++G++++N   ++ + SL +L V+GT+DA+ M
Sbjct: 127 AAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLINLEVAGTKDAINM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE +A ++SE+V+L+A++FGH + K +I    K+ + C KE I I   + +  L EE++ 
Sbjct: 187 VEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKIEIPLFELNNDLVEEVAV 246

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300
             K ++  +  IP K  R   IDDL  ++   + +      E       ++  +  D++ 
Sbjct: 247 RAKAEMAAAVSIPGKLERYGAIDDLIAQVTEEYDNREYENEEIKADVMKQVGIILHDLEK 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + K+R DGR  + +R + +Q+ LL R HGS+LF RG+TQ + V TLG   + 
Sbjct: 307 DEVRRLITEDKIRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEH 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L    +  FM HYNF P + GE  RMGAP RREIGHG L  RA+  V+P    FP
Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVIPSEEAFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSS A++C S++ALM AGVPI  PVAG+AMGLVK GD + IL+DI 
Sbjct: 427 YTIRVVSEVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDAYTILTDIQ 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGTD+GI A+QMD+KI GI++ I+  AL QAK  R  I+  M   ++
Sbjct: 487 GMEDHLGDMDFKVAGTDAGICALQMDIKIDGITKEILQEALAQAKVARKQIMANMMDAIA 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSS 599
             R +L  + P+V++M I PDQI+ VIG GGK I  I+EQ+ G K++I+ DGTV I    
Sbjct: 547 APRDELSPYAPKVQMMKIEPDQIKAVIGQGGKTINEIIEQSDGVKIDIEQDGTVVIYHYD 606

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A I  A E+I  I    +V ++Y G+VV+V D  AF++     DG +HIS  + ER  K
Sbjct: 607 QAAINKAVELIEKIVKKAQVGEVYDGKVVRVEDNYAFINLFDGTDGFLHISDYAYERTKK 666

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +V+K GD + VK+   DD+GK+ +S K +
Sbjct: 667 MGEVIKLGDIIKVKVTKVDDKGKVNVSRKAL 697


>gi|126698917|ref|YP_001087814.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           630]
 gi|254974863|ref|ZP_05271335.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-66c26]
 gi|255092250|ref|ZP_05321728.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           CIP 107932]
 gi|255100339|ref|ZP_05329316.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-63q42]
 gi|255306276|ref|ZP_05350447.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           ATCC 43255]
 gi|255313990|ref|ZP_05355573.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-76w55]
 gi|255516670|ref|ZP_05384346.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-97b34]
 gi|255649769|ref|ZP_05396671.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-37x79]
 gi|260682926|ref|YP_003214211.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           CD196]
 gi|260686524|ref|YP_003217657.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           R20291]
 gi|306519874|ref|ZP_07406221.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-32g58]
 gi|123363602|sp|Q18BI4|PNP_CLOD6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115250354|emb|CAJ68176.1| Polyribonucleotide nucleotidyltransferase [Clostridium difficile]
 gi|260209089|emb|CBA62243.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           CD196]
 gi|260212540|emb|CBE03500.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           R20291]
          Length = 703

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/697 (42%), Positives = 459/697 (65%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    ++++AGR L +E G+I   + G+ +  Y +++V+         +DG DFFPL+
Sbjct: 1   MFEHKIFKMDFAGRELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGKIPGG+L+RE +P+E  IL SR+IDR IRPLF K ++N+ QV+  V+  
Sbjct: 61  VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P +V+M+ +S AL +S +PF GP     V  ++G +V+NP  ++ ++ S+ L VS
Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVCVGLVDGAFVVNPNAEQREKSSMHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++A++MVE  A+++ ++V+LDAI+F H E K ++E I  +     KE + ++      
Sbjct: 181 GTKEAIMMVEAGADEVPDEVMLDAILFAHQEIKKIVEFIEGIVAEVGKEKMPVE---LYH 237

Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS 293
             EE++Q+++E     ++ +    EK  R + +D +K++ +++F      + +  G+I  
Sbjct: 238 AGEEITQLVREFATDKMKKAVQTFEKLERMENMDRVKEETLAHFEETLEDFEDFVGDIEE 297

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V +DI  + VR +++ + VR D R  E +R I  + G++ R HGS++F RG TQ + V T
Sbjct: 298 VLQDIIKEEVRKLIVHENVRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVAT 357

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D Q +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+
Sbjct: 358 LGALGDVQKLDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVI 417

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  S+GS+S A+VCGS+L+L+DAGVPI   VAGIAMGL+K     
Sbjct: 418 PSQEEFPYAIRLVSEVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKV 477

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI G EDHLG MDFKVAGT+ GITA+QMD+KI GI + I+  AL+QAK GR+HIL 
Sbjct: 478 AVLSDIQGMEDHLGDMDFKVAGTEYGITAIQMDIKIDGIDKEILQRALKQAKEGRIHILG 537

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM K +S+ + +L  + P++  M I PD+I++VIG GGK+I  I+++TG K++I+  G V
Sbjct: 538 EMRKTISQPKPELSPYAPKIVKMQINPDKIKDVIGPGGKIITKIIDETGVKIDIEQTGEV 597

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+   +  I+ A+E+I +I   PEV K YKG+V ++M+FGAFV     ++GL+HIS ++
Sbjct: 598 FISGIEIDMIKKAQELINNIVVEPEVGKTYKGKVSRIMNFGAFVEILPGKEGLLHISHIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERVAK  DV+  GD V VK+ + D++G++ LS KV+
Sbjct: 658 HERVAKVEDVLNIGDEVEVKVTEIDEKGRVNLSRKVL 694


>gi|148284082|ref|YP_001248172.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
           str. Boryong]
 gi|187610322|sp|A5CC62|PNP_ORITB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146739521|emb|CAM79228.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
           str. Boryong]
          Length = 740

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/696 (43%), Positives = 466/696 (66%), Gaps = 8/696 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    +++W G  L L TG+IAR +DGAVLA+ G T VL TVV+D++ K   DFFPL 
Sbjct: 1   MFNEILKKVDWHGNVLSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDMDFFPLG 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E  YA GKIPGG++++E + +E E+L+SR+IDRSIRPLF   ++N+TQ+I  VM +
Sbjct: 61  VYYREMAYAAGKIPGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQIICTVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178
           D   SP +++++ +SAAL +SG+P   P+  A+V  +N +++LNP + ++ G   LDL V
Sbjct: 121 DPRYSPDILAIIGSSAALAISGIPIVKPIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D+V M+E +A ++ E+ +L AI FG+   KPVI AI ++     K+   + ++   
Sbjct: 181 AATFDSVTMIEAQACEIDEEKMLAAIEFGYKSLKPVINAIEEIKSSIRKDIFEVTARPHL 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE----IVS 293
           +  +E+ +    D++ +  +  K  R +Q+  +++K++ YFSS+ +S  N+G+    I  
Sbjct: 241 RYNDEILKHFSSDIKSALLLQTKNERNQQLQLIQQKVIDYFSSKANSEANDGDDILNIEK 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +D ++K+ R ++L  K R+  R  + +R I  + GL    HGS+LF RGDTQ++  +T
Sbjct: 301 ALDDAKSKIFRDLVLQNKTRIGNRAVDEIRPIICEAGLFNTVHGSALFTRGDTQSLATIT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  DEQ V+ L+  +R +F++ Y FLP + GE+S + A SRREIGHG LA++AI  V+
Sbjct: 361 LGSSTDEQIVEQLNKCERQNFLLDYIFLPYSVGEISPLRAASRREIGHGWLAKKAIQLVI 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+RIVSEIT+SDGSSSMATVC +SL+LM+AGVPI   VAGIAMGLV  +G+ 
Sbjct: 421 PSKDVFPYTIRIVSEITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGLVLGEGNK 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F ILSDISG EDHLG MDFKVA T +GITA+Q+D+K+ GI+ +++    +QAK G  HIL
Sbjct: 481 FEILSDISGCEDHLGDMDFKVASTKNGITALQLDIKVQGINLSMIESTFRQAKIGINHIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N M+  +S  + +L  + P V+ + I  ++IR+VIG+GGKVI+ + +    +++I ++G 
Sbjct: 541 NVMNNTISCPKSELSTYAPMVQTLEIQKEKIRDVIGLGGKVIKELCKTFDVEIDISENGE 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           VK+  +    ++ A + I +I  VP++  I+ G+VVKV++ GAF+ +   RDG VHIS++
Sbjct: 601 VKVWGNVGENVKKAVQSIENIVFVPQIGDIFDGEVVKVIESGAFIKYVTGRDGFVHISEI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +   +   +  VK GD V VK++  D + ++KL+++
Sbjct: 661 NDTHIKDINAHVKLGDKVKVKIIGIDHKNRVKLTLR 696


>gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
 gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
          Length = 702

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/688 (42%), Positives = 448/688 (65%), Gaps = 8/688 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +E G++A+Q++GA L  Y +TVVL+  V  +  KD  DFFPLTVNY E+ Y+
Sbjct: 10  EWAGRTLTIEVGQLAKQANGATLIRYNDTVVLSAAVASKKAKD-VDFFPLTVNYDEKMYS 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE+RP+E   L +R+IDR IRP+F++ ++NE Q+   VM  D   SP   
Sbjct: 69  VGKIPGGFIKREARPSEYATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAFS 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M  +S +L +S +PF GP+    V  ++G+Y++NP ++++  S + L V+GT+DA+ MV
Sbjct: 129 AMFGSSLSLAISDIPFNGPIASVDVGRVDGEYIINPTVEQEALSDIHLTVAGTKDAINMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247
           E  A ++SE+ +L A++FGH   + ++    ++     KE + I      + LE+E++  
Sbjct: 189 ESGAAEVSEEDMLGALMFGHRAIQELVAFQEEIVAAVGKEKMNIQLLQIDADLEKEVNDA 248

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EIVSVFEDIQAKV 302
            +  +  +    EK  R + I+ +K++ ++++   +    E      E+  + ED++   
Sbjct: 249 YQSKMIAAIQTEEKLAREENIEAVKEEAMAFYEEHYQEHAEAKRINKEVKQIVEDMEKNE 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   K+R DGR  + +R +++++GLL R HGS LF RG TQA+ V TL    + Q 
Sbjct: 309 VRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSVATLAPLGEHQI 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L       F+ HYNF   + G       P RREIGHG L  RA+  V+P    FPY 
Sbjct: 369 IDGLGVENSKRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALGERALSQVIPSEEDFPYM 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLVK+G+++ +L+DI G 
Sbjct: 429 IRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENYTVLTDIQGL 488

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILNE++  ++E 
Sbjct: 489 EDHLGDMDFKVAGTSKGITALQMDIKIEGITEQILEEALIQAKKARMEILNELTSTIAEP 548

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
             +L  F P++E+M I P++I+ VIG GG  I  I+++TG K++ID +G + IAS   A 
Sbjct: 549 HEELSAFAPKIEMMQIKPEKIKVVIGRGGDQINAIIDETGVKIDIDQEGKISIASEDAAM 608

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A+E+I  +T   EV K+Y G+V ++  FGAFV     +DGL+HIS+++ ERVAK  D
Sbjct: 609 IKRAKEIIEELTKDIEVGKVYSGKVKRIEKFGAFVEIAKGKDGLLHISEIANERVAKVED 668

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  G+ + VK+++ D +G+I LS KV+
Sbjct: 669 VLALGEVMDVKVIEIDKQGRINLSRKVL 696


>gi|306820072|ref|ZP_07453720.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551850|gb|EFM39793.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 690

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 310/691 (44%), Positives = 449/691 (64%), Gaps = 15/691 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E++  GR L +ETG++A+ ++GA    YG+TV+L T       K+G DFFPL+V+++E+ 
Sbjct: 6   EMQLGGRTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLSVDFEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+ GKIPG ++RRE +P+E  IL SR+IDR IRPLF K Y+N+ QV+  V+  D++ +P 
Sbjct: 66  YSAGKIPGSFIRREGKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSVDIDHNPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            ++M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ + S + L VSGT+DA++
Sbjct: 126 TIAMIGSSIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSDMYLVVSGTKDAIM 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD----FSKLEE 242
           MVE  +N++SE+V+L+AI+F H E K + + +  +A    KE      KD    F  LEE
Sbjct: 186 MVEAGSNEVSEEVMLNAILFAHEEIKKICDFVQSIANEIGKE------KDEYYVFKPLEE 239

Query: 243 ---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
               +++   + ++ +    +K  R   ++ +K + + +F  E    N  ++  V   I 
Sbjct: 240 VEVAVTEFASQKMKDAIKTVDKQERQDNMEKVKDETMEHFE-EIFPDNMKDVDEVIYSIT 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR +++  KVR D R  E +R I  + G+L RTHGS++F RG TQ + V TL    +
Sbjct: 299 KREVRNMIVKDKVRPDNRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLSE 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   +M HYNF   + GE      P RREIGHG LA+RAI P+LP   +F
Sbjct: 359 AQTIDGLDEEEERRYMHHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+L L+DAGVP+   VAGIAMGL+KD +D +ILSDI
Sbjct: 419 PYTIRVVSEVMSSNGSTSQASVCGSTLCLLDAGVPMKDMVAGIAMGLIKDEEDVVILSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ GITA+QMD+KI GI E+I+  AL QA+ GRLHIL EM KV+
Sbjct: 479 QGMEDFLGDMDFKVAGTEKGITAIQMDIKISGIDEDILKRALAQAREGRLHILGEMRKVI 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R  L  + P +  M I PD+IR VIG GGKVI  I+++TG K++ID+DG V I S+ 
Sbjct: 539 DKPRESLSPYAPMIINMMINPDKIREVIGTGGKVINKIIDETGVKIDIDNDGKVSILSND 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A+ +I  I   PEV KIY G++ K+M FGAFV     ++GL+HISQ+  +RVAK
Sbjct: 599 QEMCMKAKAIIEGIVAEPEVGKIYSGKITKIMQFGAFVEILPGKEGLLHISQMDKQRVAK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D+ KEGD+V VKL + D +G++ LS KV+
Sbjct: 659 VEDLFKEGDSVEVKLTEIDSQGRLNLSRKVL 689


>gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 755

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 324/712 (45%), Positives = 458/712 (64%), Gaps = 36/712 (5%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    IEW GR L LETG+IARQ+DG+V+  YG+T +L TVV  +  ++  DF PL 
Sbjct: 1   MFEIIKKSIEWGGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKK-EEIVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  ++ N++ +
Sbjct: 60  VQFIAKSYAMGRIPGGFFKREGKPSDRETLISRVIDRSIRPLFLEGFHDEISIVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E +  SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFIIAGVLVGCDGNNNYILNPSVQEMKVSSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVID 233
           SG + ++LMVE EA +L E+ +L+AI FGH   +PVI+ I + A     K  +  PI I 
Sbjct: 180 SGDERSILMVESEAKELPEENILNAIKFGHEHLQPVIKLIKEFADTIGNKFDSFAPIDIS 239

Query: 234 ---------SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
                    SKDF   EE  SQ +K++            R + ++ ++  +++    + +
Sbjct: 240 DIMQDLEKHSKDF---EEAYSQTVKQE------------RAQTLETIRNNILNPL--KEA 282

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             +E  I    ++ +  ++R ++ +K  R+DGR  + +R I  +V +L RTHGS+LF RG
Sbjct: 283 GKDEKLITQAVKNFERSLLRKIIREKGTRIDGRKYDEIRQIEVEVDILSRTHGSALFTRG 342

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
            TQA+VV  LGT +DEQ VD + G +R  FM+HYNF   A G+ S + AP RREIGHG+L
Sbjct: 343 STQALVVTALGTTQDEQIVDDIEGDRREHFMLHYNFPSFAVGDASAIRAPGRREIGHGKL 402

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +AIHPVLP  ++FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAM
Sbjct: 403 AWKAIHPVLPDKSEFPYTIRVVSEIMESDGSSSMATVCGTSLALMDTGVPIKSPVAGIAM 462

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GL+KD +D++ILSDI GDED+LG MDFKVAGT  GITA+QMDMKI GIS  I+  +L+QA
Sbjct: 463 GLIKDKNDYVILSDILGDEDYLGDMDFKVAGTSEGITALQMDMKISGISFEIVEKSLEQA 522

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GRLHIL +M+ V+SE    +    PR+    I  D+I   IG  GK IR + E++ AK
Sbjct: 523 KAGRLHILEKMNSVISEHSDDVKGHAPRMVSFYIDKDKISAAIGAKGKNIRSVCERSNAK 582

Query: 585 VNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + I DDG V + + S AE E A+  MI SIT++ E   I   +VVK+      +     R
Sbjct: 583 IEIGDDGKVSVFAMSSAEAEIAKNMMIDSITEL-EQGAIVDVKVVKIDKSIVELELFNGR 641

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G +HIS+++ + +     ++K+GDT    ++DF+  G  KLS + VDQ TG
Sbjct: 642 KGKMHISEVANQHIESIESILKQGDTFKALVIDFEKGGCPKLSRRRVDQETG 693


>gi|255655329|ref|ZP_05400738.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-23m63]
 gi|296451314|ref|ZP_06893054.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP08]
 gi|296880334|ref|ZP_06904297.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP07]
 gi|296259920|gb|EFH06775.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP08]
 gi|296428575|gb|EFH14459.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP07]
          Length = 703

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/697 (42%), Positives = 459/697 (65%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    ++++AGR L +E G+I   + G+ +  Y +++V+         +DG DFFPL+
Sbjct: 1   MFEHKIFKMDFAGRELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGKIPGG+L+RE +P+E  IL SR+IDR IRPLF K ++N+ QV+  V+  
Sbjct: 61  VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P +V+M+ +S AL +S +PF GP     +  ++G +V+NP  ++ ++ S+ L VS
Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVCIGLVDGAFVVNPNAEQREKSSMHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++A++MVE  A+++ ++V+LDAI+F H E K ++E I  +     KE + ++      
Sbjct: 181 GTKEAIMMVEAGADEVPDEVMLDAILFAHQEIKKIVEFIEGIVAEVGKEKMPVE---LYH 237

Query: 240 LEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS 293
             EE++Q+++E     ++ +    EK  R + +D +K++ +++F      + +  G+I  
Sbjct: 238 AGEEITQLVREFATDKMKKAVQTFEKLERMENMDRVKEETLAHFEETLEDFEDFVGDIEE 297

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V +DI  + VR +++ + VR D R  E +R I  + G++ R HGS++F RG TQ + V T
Sbjct: 298 VLQDIIKEEVRKLIVHENVRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVAT 357

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D Q +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+
Sbjct: 358 LGALGDVQKLDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVI 417

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  S+GS+S A+VCGS+L+L+DAGVPI   VAGIAMGL+K     
Sbjct: 418 PSQEEFPYAIRLVSEVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKV 477

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI G EDHLG MDFKVAGT+ GITA+QMD+KI GI + I+  AL+QAK GR+HIL 
Sbjct: 478 AVLSDIQGMEDHLGDMDFKVAGTEYGITAIQMDIKIDGIDKEILQRALKQAKEGRIHILG 537

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM K +S+ + +L  + P++  M I PD+I++VIG GGK+I  I+++TG K++I+  G V
Sbjct: 538 EMRKTISQPKPELSPYAPKIVKMQINPDKIKDVIGPGGKIITKIIDETGVKIDIEQTGEV 597

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+   +  I+ A+E+I +I   PEV K YKG+V ++M+FGAFV     ++GL+HIS ++
Sbjct: 598 FISGIEIDMIKKAQELINNIVVEPEVGKTYKGKVSRIMNFGAFVEILPGKEGLLHISHIA 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERVAK  DV+  GD V VK+ + D++G++ LS KV+
Sbjct: 658 HERVAKVEDVLNIGDEVEVKVTEIDEKGRVNLSRKVL 694


>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
 gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
          Length = 703

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/695 (45%), Positives = 457/695 (65%), Gaps = 17/695 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL-KDGQDFFPLTVNYQE 65
           VE    G+ L +ETG  A+Q+DGA +   G+T+VLAT V  +   K+  DF PLTVNYQE
Sbjct: 4   VERTINGKKLTIETGWYAKQADGACVIRMGDTMVLATAVSSKEPPKEFLDFLPLTVNYQE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGG+++RE +PT +E L+SR+IDRSIRPLF K YK E QVII  +  D E+ 
Sbjct: 64  RFYAAGKIPGGFVKREGKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITTISADQEND 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGSLDLFVSGTQDA 184
           P ++S++AAS +L LS +PF GPV G +V  + NG        + D   L+L ++GT+DA
Sbjct: 124 PAIISILAASCSLCLSDIPFLGPVAGVRVSRFENGLKAFASLKEIDDSRLNLILAGTKDA 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSK 239
           + M+E  A +LSED ++DAI+FG +    +++A  ++ K  AK      PI +     +K
Sbjct: 184 INMIEAGAGELSEDEMVDAIMFGKDNIDILLDAQEEIIKKAAKPKREYIPIDVSEDIVNK 243

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQI----DDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +E        ++L  +  I EK  R   I    + +K+K+V  F  E     +    + F
Sbjct: 244 IE----AFAADELMRAVNIKEKKKRNSTIEAIFNKVKEKVVEEFEDEDFIEEK--TAAAF 297

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ED+   +VRT +++  VR+DGR  + +R I+ +VG+L R HGS++F RG+TQA+V  TLG
Sbjct: 298 EDVVKNIVRTKIINTGVRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLG 357

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +RED Q +D +S      FM+HYNFLP +TGEV R+G P RREIGHG LA+RAI P+LP 
Sbjct: 358 SREDAQIIDDVSEEGYERFMLHYNFLPFSTGEVKRLGPPGRREIGHGNLAKRAIEPMLPS 417

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPY +R+VS+I ES+GSSSMATVCGS+L+LMDAGVPI KPV+G+AMGL+K    + I
Sbjct: 418 EDDFPYAIRVVSDILESNGSSSMATVCGSTLSLMDAGVPIKKPVSGVAMGLIKYEGGYAI 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDH G MDFKVAGT  GITA+QMD+KI G+   ++  AL +AK  RL ILN+M
Sbjct: 478 LTDILGDEDHYGDMDFKVAGTKDGITALQMDIKITGVDAVLLKEALYKAKEARLFILNKM 537

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             VL   R  +  + P++  + I P++I+++IG GGK I+ I+E+T  K++I+ DG + +
Sbjct: 538 LAVLDSPRPDISPYAPQIRTLTIEPEKIKDLIGPGGKTIKSIIERTNVKIDINPDGKINV 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  ++++ A E+I+S+T   +   + +G V ++  +GAF+     ++GL+HISQ+S +
Sbjct: 598 YGTMDSKLDEAMEIIKSLTTTIKEGDVIEGVVTRIEKYGAFIKLLPNKEGLLHISQISND 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV+   DV+  GD + VK+ + D+ G+I LS K++
Sbjct: 658 RVSNIYDVLNIGDKIRVKVTNIDELGRIALSRKIL 692


>gi|253583637|ref|ZP_04860835.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
           ATCC 27725]
 gi|251834209|gb|EES62772.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
           ATCC 27725]
          Length = 699

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 320/708 (45%), Positives = 452/708 (63%), Gaps = 27/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   VE+E AGR L   TG+IARQS GAV+  YGETV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKKVELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RE RP+ N  L +R+IDR IRP+F + + ++  ++  V  +
Sbjct: 61  VDYIEKFYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179
           D +++P  + ++ +S ALMLS LPF GPV G  V Y NG+++LNP   + +   L+L V+
Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVVGYKNGEFILNPTPEELETSELELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G++DAV MVE  A +L E+ +L AI+F H   K +     + AK+  KE IV        
Sbjct: 181 GSKDAVNMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKIVF------- 233

Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--- 288
           ++EE+  ++K        E L+ +     K  R + +D L+++++  F  E+    E   
Sbjct: 234 VKEEVLPLVKDFIDEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENYEGVEEED 293

Query: 289 ------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                 GE    + D+  K+VR  +L  K R+DGR +  +R + A+ G+L   HGS++F 
Sbjct: 294 IPEEVIGEFKGYYHDLMKKLVREAILYHKHRVDGRKTTEIRPLFAETGVLPIPHGSAMFT 353

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQAIVV TLGT+EDEQ VD L       F +HYNF P + GE  RMG+P RRE+GHG
Sbjct: 354 RGETQAIVVTTLGTKEDEQLVDDLEKEYFKKFYLHYNFPPYSVGETGRMGSPGRRELGHG 413

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI
Sbjct: 414 SLAERALSYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGI 473

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+
Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALK 533

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   R  IL  M+  +S +   L    PR+  M I  D+I  +IG GGK I+GI+E+TG
Sbjct: 534 QALDARNEILVVMNNAIS-APADLRPNVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTG 592

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           A ++I DDG V I S     ++    ++ +     EV +IY G+VV +  FGAF+     
Sbjct: 593 ATIDISDDGNVSIFSKDEEVLKETITLVNAFVKDVEVGEIYNGRVVNIAKFGAFMEILPG 652

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+H+S++S ERVA   DV+K GD   VK++  ++ GKI LS K +
Sbjct: 653 KEGLLHVSEISNERVANVEDVLKVGDKFDVKVISTEN-GKISLSKKKI 699


>gi|309389238|gb|ADO77118.1| polyribonucleotide nucleotidyltransferase [Halanaerobium praevalens
           DSM 2228]
          Length = 696

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 303/686 (44%), Positives = 462/686 (67%), Gaps = 11/686 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I++AG     +TG++A+Q++G+V+   G++ VL T V D   + G ++FPL VNY+ER Y
Sbjct: 6   IDYAGDQFNFQTGKLAKQANGSVVVRCGDSQVLVTAVMDEP-RPGMNYFPLMVNYEERVY 64

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A+G+IPG  +RRE RP +   L +R+IDRSIRPLF + ++++ Q++  ++  D +  P V
Sbjct: 65  AIGQIPGSVMRREGRPRDEATLAARVIDRSIRPLFPEGFRHDVQIVATILSVDDDHDPEV 124

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +++  ASAAL LS +PF GP+ G +V  ++ Q ++NP  +E + S LDL V+G++DA++M
Sbjct: 125 LALNGASAALTLSDIPFAGPIGGVKVALVDEQIIINPNEEERENSDLDLVVAGSKDAIMM 184

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           VE  AN++SE  VL+A+   H E K +I    ++ +   +     E   +DS+  SK++E
Sbjct: 185 VEASANEVSEATVLEAMKVAHAEIKKIISLQEEMRQEAGEDKFHFESPTVDSEIQSKVDE 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +   +KE +++     EK  R  +ID+LK ++ +  + +  S  + +I   FE +  K 
Sbjct: 245 ILGNKLKEAIQIQ----EKQARSDKIDELKAELKATINPDEESELDSQIGMAFEKMLKKS 300

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           V++++++  +R DGRD + +R I A+V  + R HGS +F RG+TQA+ V+TLG+  DEQ 
Sbjct: 301 VKSLVVEDGIRPDGRDYDEIRPIWAEVDFVPRAHGSGVFTRGETQALSVLTLGSARDEQT 360

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +  L   +   +M HYNF     GE S M +P RREIGHG L  +A+ PV+P   +FPYT
Sbjct: 361 LFGLGENETKRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLGEKALLPVIPSEEEFPYT 420

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSE+ ES+GSSS A++CGSSLALM AGVPI  PVAGIAMGL+K  DD +ILSDI G 
Sbjct: 421 IRIVSEVLESNGSSSQASICGSSLALMAAGVPIKAPVAGIAMGLMKKDDDVVILSDIQGF 480

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED  G MDFKVAGT++GITA+QMD+K+ G+S +I+  AL++AK+GR+HI+ +M  V+ E+
Sbjct: 481 EDFNGDMDFKVAGTEAGITALQMDIKLKGLSYDILEEALEKAKKGRMHIMGKMLDVIPEA 540

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L E  P +  M I P++IR VIG GGK+I  I+++TGA ++I+DDG VKI +     
Sbjct: 541 RPELSENAPAIITMNIDPEKIRFVIGPGGKMINKIIDETGASIDIEDDGLVKIMTDDQEG 600

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A+EMI  +T+  EV KIY+G+V ++M+FGAFV     ++GLVHIS+L+   V +  D
Sbjct: 601 GQQAQEMIARLTEEVEVGKIYQGKVKRIMNFGAFVEILPNKEGLVHISKLADRHVKEVGD 660

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +V  GD + VK+++ D++ +I LS+K
Sbjct: 661 IVSVGDEIPVKVIEIDNQDRINLSLK 686


>gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
           Re1]
 gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
           Re1]
          Length = 700

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 312/681 (45%), Positives = 453/681 (66%), Gaps = 3/681 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E  GR L +ETG++A+Q++G+V+  Y +TV+L T    +  ++G DF PLT++Y+E+ YA
Sbjct: 7   EIGGRKLIIETGKVAQQANGSVMIRYEDTVLLVTATASKKPREGVDFLPLTIDYEEKLYA 66

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE +P+E  IL +R+IDR +RPLF K ++N+ QVI  V+  D +++P +V
Sbjct: 67  VGKIPGGFIKREGKPSEKAILSARLIDRPLRPLFPKDFRNDVQVIATVLSVDQDNTPDIV 126

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           ++  AS AL +S +PFEGPV    V  I+G+YV+NP + E + S L L V+GT++AVLMV
Sbjct: 127 AINGASCALCISDIPFEGPVGAVSVGLIDGKYVINPTVSEAEKSRLRLVVAGTKEAVLMV 186

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQM 247
           E  A+++SE+ +L AI++GH E K +I    ++     K  + I +++   +LE+ + + 
Sbjct: 187 EAGADEVSENEMLSAILYGHEEIKKIIAFQEEIINEIGKTKMEITAEEIDDELEKSVREF 246

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
             ED+  +  I +K  R   ID + +  + +F   +    E +I  V  DI  + VR ++
Sbjct: 247 ATEDILKAIRIYDKQEREAYIDKINEDTLLHFQDIYPD-TEKQITDVLYDILKEEVRKMI 305

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
             + +R DGR    +R IS +VG+L RTHGS LF RG TQ + V TLG   D Q +D L 
Sbjct: 306 SYEGIRPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLG 365

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
             +   +M HYNF P +TGE   +  P RREIGHG LA RA+ P++P    FPYT+R+VS
Sbjct: 366 IEESKRYMHHYNFPPYSTGETKVIRGPGRREIGHGALAERALEPMIPSEEDFPYTIRLVS 425

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+  S+GSSSMA+VCGS+LALMDAGVPI  PV+G+AMGL+K GD   IL+DI G ED LG
Sbjct: 426 EVLSSNGSSSMASVCGSTLALMDAGVPIKAPVSGVAMGLIKQGDKVTILTDIQGMEDFLG 485

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT +GITA+QMD+KI GI E+I+  ALQQA+ GRL I+++M  V+ E R +L 
Sbjct: 486 DMDFKVAGTKNGITAIQMDIKIKGIDEDILKSALQQAREGRLFIMDKMLSVIPEPRKELS 545

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            + PR+  + + PD+IR++IG GGK I  I+ +T  K++I+DDG V I++   +    A 
Sbjct: 546 AYAPRIFTITVDPDKIRDIIGPGGKTINKIIAETNTKIDIEDDGKVYISAPEESAGIKAM 605

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+I  IT   EV +IY G++++  +FGAF      ++GL+HIS+LS ERV +  DVVK G
Sbjct: 606 EIIDKITQDVEVGRIYMGKIMRTTNFGAFAEILPGKEGLIHISKLSKERVKRVEDVVKVG 665

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
           D + VK+ D D +G+I LS K
Sbjct: 666 DEILVKVTDIDKQGRINLSHK 686


>gi|298246516|ref|ZP_06970322.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
           DSM 44963]
 gi|297553997|gb|EFH87862.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
           DSM 44963]
          Length = 816

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/691 (43%), Positives = 456/691 (65%), Gaps = 7/691 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H  E    GR + +ETGR+A QS GAVL  YG+TV+LAT V     ++G DFFPLTV+ 
Sbjct: 2   IHRQEAVIGGRVMSIETGRVAEQSSGAVLVRYGDTVILATAVGSDEPREGIDFFPLTVDV 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG+++RE R TE+ IL SR+ DR +RPLF K Y+N+ Q++I V+  D E
Sbjct: 62  EERMYAAGKIPGGFIKREGRATEHAILASRLTDRPLRPLFPKGYRNDVQIVITVLSVDQE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P ++ +V ASAAL +S +PF GPV   +V Y++ Q+V+NP      +  LDL ++GT 
Sbjct: 122 NDPDIMGIVGASAALSISDVPFAGPVGAVRVGYVDDQFVINPPASAMSRSKLDLAIAGTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           DA++MVE  A +L ED++L+A+  GH   + +++   KL ++C K      +    ++L+
Sbjct: 182 DAIMMVEAGAKELPEDMMLEALRVGHEALQDLVKMQEKLVQVCGKPKRTFAAPVPDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++++ ++     +    +K  R   +  ++ ++V+   +++    + EI+  +E     
Sbjct: 242 GKVAEFVRPRFEAAVNNSDKTARSASLSQVQDELVTELGTQYPDRLK-EIIGFYEKELKA 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR  +LD  +R DGRD++T+R+I+ +VGLL RTHGS+LF RG TQ + V+TLG+  +EQ
Sbjct: 301 YVRNTILDSGIRPDGRDTKTIRNITCEVGLLPRTHGSALFTRGQTQVLSVITLGSPGEEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       FM HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 361 VLDGLGTNDNKRFMHHYNFPPYSTGESKPLRGPGRREIGHGALAERAVSPVIPTQEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGD---DFIILS 477
           T+R VS+I  S+GS+SM +VCG++LALM+AGVPI  PVAG+AMGL+  +G+    + +LS
Sbjct: 421 TIRAVSDILSSNGSTSMGSVCGTTLALMEAGVPIHAPVAGVAMGLITGEGEREGKWAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKVAGT  G+TA+QMD+K+ GI+ ++M  AL+QA  GR+ I+ +M  
Sbjct: 481 DIQGIEDALGDMDFKVAGTADGVTALQMDIKVKGITYDVMAKALEQAHEGRMFIMEKMLD 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R +L  + PR++ + I  D+I  VIG GGK+IR I +++GAK++I+DDGTV IA+
Sbjct: 541 AIDAPREELSIYAPRIQSIKINSDKIGAVIGPGGKMIRKIQDESGAKIDIEDDGTVNIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S   ++ A + +R++T+  EV +IY G V +++DFG FV     ++GLV  SQL+  +V
Sbjct: 601 TSGEAMQRAMDAVRALTEEVEVGRIYTGTVRRLVDFGCFVEILPGKEGLVRTSQLADYQV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +  DVV  GD + V +++ D +G++ LS +
Sbjct: 661 MRPEDVVSLGDEITVMVIEVDGQGRVNLSRR 691


>gi|219669688|ref|YP_002460123.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
           hafniense DCB-2]
 gi|254782717|sp|B8FR00|PNP_DESHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219539948|gb|ACL21687.1| Polyribonucleotide nucleotidyltransferase [Desulfitobacterium
           hafniense DCB-2]
          Length = 723

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/694 (45%), Positives = 448/694 (64%), Gaps = 16/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+  GR +  +TG+I +Q+ GA+   YG+TVV A        ++G DFFPLTV ++ER Y
Sbjct: 10  IQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLY 69

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE RP+E  IL +R+IDR IRPLF + Y+N+ QV+  VM  D + +  +
Sbjct: 70  AAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASDI 129

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
             + AASAAL +S +PFEGPV    V  I  ++++NP +++ + S + L V+GT+DAV+M
Sbjct: 130 TGINAASAALTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSVMHLTVAGTKDAVMM 189

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEEEM 244
           VE  A ++ E  +L+AI+FGH E + + E I    ++ A E  +   K      ++ EE+
Sbjct: 190 VEAGAQEVPEAQMLEAIMFGHREIQRIAEFIENY-RLEALERNLAKPKQEVVMKQMPEEI 248

Query: 245 SQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            Q +K    + +  +    EK  R + I  +K++ +++F+ ++   +   I  + ED   
Sbjct: 249 VQAVKAFAYDKMDQAVRTEEKKAREEAIRQVKEEALAHFAEQYPE-DLKTIDKILEDFVH 307

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR ++  + +R DGR  + +R IS +VG+L RTHG+ LF RG TQ + V TLG   DE
Sbjct: 308 KIVRRLITVEHIRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDE 367

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA+ PV+P    FP
Sbjct: 368 QILDGLGLEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPNENDFP 427

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSSMA+VCGS+L+LMDAGVP+  PVAGIAMGL+ + +   ILSDI 
Sbjct: 428 YTIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAILSDIQ 487

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  G+TA+QMD+KI G+S  I+  AL QAK GRL IL++M  V+ 
Sbjct: 488 GMEDHDGDMDFKVAGTSQGVTALQMDIKIKGVSREILERALTQAKEGRLFILDKMLSVIE 547

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L  F PR+   +I PD+IR VIG GGK I+ I+++TG K++I+DDG V I++   
Sbjct: 548 KPRPELSPFAPRIITASIHPDKIREVIGPGGKTIKKIIDETGVKIDIEDDGRVFISAVDG 607

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLST 654
              E A ++I+++T   EV +IY G+V ++MDFGAFV           ++GLVHISQL+ 
Sbjct: 608 EAGENALKIIQALTQEVEVGRIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHISQLAH 667

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            RV K  DVVK GD + VK    D +G++ LS K
Sbjct: 668 GRVEKVEDVVKLGDEILVKATGIDKQGRLNLSRK 701


>gi|189184267|ref|YP_001938052.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
           str. Ikeda]
 gi|226702671|sp|B3CTX1|PNP_ORITI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189181038|dbj|BAG40818.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
           str. Ikeda]
          Length = 736

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/694 (43%), Positives = 467/694 (67%), Gaps = 8/694 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    +++W G  L L TG+IAR +DGAVLA+ G T VL TVV+D++ K   DFFPL 
Sbjct: 1   MFNEILKKVDWHGNMLSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDIDFFPLG 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E  YA GKIPGG++++E + +E E+L+SR+IDRSIRPLF   ++N+TQVI  VM +
Sbjct: 61  VYYREMAYAAGKIPGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQVICTVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178
           D   SP +++++ +SAAL +SG+P   P+  A+V  +N +++LNP + ++ G   LDL V
Sbjct: 121 DPRYSPDILAIIGSSAALAISGIPIVKPIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D+V M+E +A ++ E+ +L AI FG+   KPVI AI ++     K+   + ++   
Sbjct: 181 AATFDSVTMIEAQACEIDEEKMLAAIEFGYKSLKPVINAIEEIKSSIRKDIFEVTARPHL 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---F 295
           +  +E+ +    D++ +  +  K  R +Q+  +++K+V YFSSE +  ++  I+++    
Sbjct: 241 RYNDEILKHFSSDIKSALLLQTKNERNQQLQLIQQKVVDYFSSEAN--DDDAILNIEKAL 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +D+++K+ R ++L  K R+  R  + +R I  + GL    HGS+LF RGDTQ++  +TLG
Sbjct: 299 DDVKSKIFRDLVLQDKTRIGNRAIDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ V+ L+  +R +F++ Y FLP + GE+S + A SRREIGHG LA++AI  V+P 
Sbjct: 359 SSTDEQIVEQLNKCERQNFLLDYIFLPYSVGEISPLRAASRREIGHGWLAKKAIQLVIPS 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFI 474
              FPYT+RIVSEIT+SDGSSSMATVC +SL+LM+AGVPI   VAGIAMGLV  +G+ F 
Sbjct: 419 KDVFPYTIRIVSEITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGLVLGEGNKFE 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDISG EDHLG MDFKVA T +GITA+Q+D+K+ GI+ +++    +QAK G  HILN 
Sbjct: 479 ILSDISGCEDHLGDMDFKVASTKNGITALQLDIKVQGINLSMIESTFRQAKIGINHILNV 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+  +S  + +L  + P V+ + I  ++IR+VIG+GGKVI+ + +    +++I ++G VK
Sbjct: 539 MNNTISCPKSELSTYAPMVQTLEIQKEKIRDVIGLGGKVIKELCKTFDVEIDISENGEVK 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    ++ A + I +I  VP++  I+ G+VVKV++ GAF+ +   RDG VHIS+++ 
Sbjct: 599 VWGNVGENVKKAVQSIENIVFVPQIGDIFDGEVVKVIESGAFIKYVTGRDGFVHISEIND 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             +   +  VK GD V VK++  D + ++KL+++
Sbjct: 659 THIKDINAHVKLGDKVKVKIIGIDHKNRVKLTLR 692


>gi|89895255|ref|YP_518742.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
           hafniense Y51]
 gi|122482382|sp|Q24UJ4|PNP_DESHY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89334703|dbj|BAE84298.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 727

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/694 (45%), Positives = 449/694 (64%), Gaps = 16/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I+  GR +  +TG+I +Q+ GA+   YG+TVV A        ++G DFFPLTV ++ER Y
Sbjct: 10  IQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLY 69

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE RP+E  IL +R+IDR IRPLF + Y+N+ QV+  VM  D + +  +
Sbjct: 70  AAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASDI 129

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
             + AASAAL +S +PFEGPV    V  I  ++++NP +++ + S + L V+GT+DAV+M
Sbjct: 130 TGINAASAALTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSVMHLTVAGTKDAVMM 189

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEEEM 244
           VE  A ++ E  +L+AI+FGH E + + E I    ++ A E  +   K      ++ EE+
Sbjct: 190 VEAGAQEVPEAQMLEAIMFGHREIQRIAEFIENY-RLEALERNLAKPKQEVVMKQMPEEI 248

Query: 245 SQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            Q +K    + +  +    EK  R + I  +K++ +++F+ ++   ++  I  + ED   
Sbjct: 249 VQAVKAFAYDKMDQAVRTEEKKAREEAIRQVKEEALAHFAEQYPEDSK-TIDKILEDFVH 307

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR ++  + +R DGR  + +R IS +VG+L RTHG+ LF RG TQ + V TLG   DE
Sbjct: 308 KIVRRLITVEHIRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDE 367

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA+ PV+P    FP
Sbjct: 368 QILDGLGLEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPDENDFP 427

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSSMA+VCGS+L+LMDAGVP+  PVAGIAMGL+ + +   ILSDI 
Sbjct: 428 YTIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAILSDIQ 487

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  G+TA+QMD+KI G+S  I+  AL QAK GRL IL++M  V+ 
Sbjct: 488 GMEDHDGDMDFKVAGTSQGVTALQMDIKIKGVSREILERALTQAKEGRLFILDKMLSVIE 547

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L  F PR+   +I PD+IR VIG GGK I+ I+++TG K++I+DDG V I++   
Sbjct: 548 KPRPELSPFAPRIITASIHPDKIREVIGPGGKTIKKIIDETGVKIDIEDDGRVFISAVDG 607

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLST 654
              E A ++I+++T   EV +IY G+V ++MDFGAFV           ++GLVHISQL+ 
Sbjct: 608 EAGENALKIIQALTQEVEVGRIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHISQLAH 667

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            RV K  DVVK GD + VK    D +G++ LS K
Sbjct: 668 GRVEKVEDVVKLGDDILVKATGIDKQGRLNLSRK 701


>gi|309790622|ref|ZP_07685176.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
           trichoides DG6]
 gi|308227350|gb|EFO81024.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
           trichoides DG6]
          Length = 763

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 320/699 (45%), Positives = 456/699 (65%), Gaps = 16/699 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V+TV  E AGR L LE GR A Q+DGAV   YG+TV+LATVV  +  ++G DFFPLTV+Y
Sbjct: 15  VYTVSTEIAGRTLTLEAGRFAEQADGAVTVRYGDTVLLATVVAAKEPREGIDFFPLTVDY 74

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+ GKIPG + +RE RPT   IL SR+ DR +RPLF K Y NE QVII     D+ 
Sbjct: 75  EERMYSAGKIPGNFFKREGRPTTTAILTSRLTDRPLRPLFPKGYYNEVQVIITTFSIDMV 134

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P  ++++ ASAAL +S +PF+GPV   Q+ +++G+   NP + E ++  LDL V+GT+
Sbjct: 135 NDPGPMAIIGASAALAISDIPFKGPVGAVQMTHLDGKVAANPPMSELERSRLDLVVAGTK 194

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237
           DAVLMVE  A +L+ED +L+A++ GH  CK + E   +L ++C K      P  +D+   
Sbjct: 195 DAVLMVEAGAYELTEDEMLEAVMQGHAVCKQLCELQEELVRLCGKPKREFVPPAVDTS-- 252

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVS 293
             LEE +S  + + LR +     K  R ++   LK ++V++FS+    E       ++  
Sbjct: 253 --LEETISAWMGKRLREAVRSKSKQEREERTAALKAEVVAHFSADEPEEELPTRIKDVSK 310

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            FE +  + VR  +LD+ +R+DGR +  +R IS  VG++ R HG+ LF RG TQ + V T
Sbjct: 311 AFEKLLKEEVRNAILDEGIRVDGRATTEIRPISVDVGVIPRVHGTGLFHRGQTQVLTVTT 370

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  +EQ +D L       ++ HYNF P +TGE  RMG+P RR+IGHG LA R+++ VL
Sbjct: 371 LGSPGEEQRLDDLGIETSKRYIHHYNFPPFSTGEAKRMGSPRRRDIGHGALAERSLYAVL 430

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
           P   +FPYT+R+VSE+  S+GSSSMA+VCGSSL+LMDAGVPI +PVAG+AMGL+ D D  
Sbjct: 431 PTLEEFPYTMRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKRPVAGVAMGLITDPDGR 490

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G ED LG MDFKVAGT  GIT +QMD+K  GI+ +IM  A  QA+ GRL IL
Sbjct: 491 WTVLTDIQGLEDALGDMDFKVAGTSEGITGLQMDIKTTGITYDIMRQAFAQARDGRLFIL 550

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M+ V++  R +L  F PR+  + IP ++I  +IG GGK IR I+E TGA+++++DDG 
Sbjct: 551 DKMNAVINSPRSELSPFAPRIITVQIPVEKIGALIGPGGKTIRSIIEATGAQIDVEDDGR 610

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IA+S     + A  M+  +T   ++  ++ G+VV +  FGAFV     +DG+VHIS+L
Sbjct: 611 VFIATSDGEAAQKALAMVEGLTREAKIGDVFLGKVVSIKPFGAFVSILPGKDGMVHISEL 670

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           S  R+    DV++ GD + V ++D D   GKI LS + V
Sbjct: 671 SENRIENVEDVIQVGDEINVMVIDVDRVSGKISLSRRAV 709


>gi|163847604|ref|YP_001635648.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525460|ref|YP_002569931.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus sp.
           Y-400-fl]
 gi|187610252|sp|A9WEJ7|PNP_CHLAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096674|sp|B9LH03|PNP_CHLSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163668893|gb|ABY35259.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449339|gb|ACM53605.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus sp.
           Y-400-fl]
          Length = 755

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 330/700 (47%), Positives = 462/700 (66%), Gaps = 16/700 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           ++++V  E AGR L LE GR A Q+DGAV+A YG+T++LATVV  +  ++G DFFPLTV+
Sbjct: 5   NIYSVSAEIAGRTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGKIPG + +RE RPT   ILISR+ DR +RPLF K + NE QVII     D+
Sbjct: 65  YEEKMYAVGKIPGNFFKREGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDM 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           E+ P  ++++AASAAL +S +PF GPV   Q+ ++NGQ V+NP+++E   S LDL V+GT
Sbjct: 125 ENDPGPLAIIAASAALCISDIPFAGPVGAVQMGHLNGQLVVNPKMNEIADSRLDLVVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKD 236
           +DAVLMVE  A +L+ED +L A+I GH  CK + +   +L ++C K      P V+D+  
Sbjct: 185 KDAVLMVEAGAYELTEDEMLQAVIDGHAVCKQICDLQEQLVQLCGKPKRPFTPPVVDTS- 243

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIV 292
              LEE +S  + + LR +   P K  R  Q + LK +++++F++    E  +    E+ 
Sbjct: 244 ---LEEAISAWMGDRLRKAVRSPIKQEREAQTEALKAEVIAHFTADEPEEEIANRTKEVT 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             FE +    VR  +LD+ +R+DGR  + +R IS +VG++ R HGS++F RG TQ + + 
Sbjct: 301 KAFEKLLKDEVRNAILDEGIRVDGRALDEIRPISIEVGVIPRVHGSAVFTRGQTQVLTIT 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ VD L       ++ HYNF P +TGEV R+G P RR+IGHG LA R+++ V
Sbjct: 361 TLGSPGDEQKVDDLGIETSKRYIHHYNFPPFSTGEVRRIGTPRRRDIGHGALAERSLYAV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+R+VSE+  S+GSSSMA+VCGSSL+LMDAGVPI  PVAG+AMGL+   D 
Sbjct: 421 LPDEKDFPYTIRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLITGEDG 480

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI G ED LG MDFKVAGT  G+T +QMD+K  GI+  IM  A  QA+ GRL I
Sbjct: 481 RWRVLTDIQGLEDALGDMDFKVAGTAKGVTGLQMDIKTTGITYEIMREAFAQARAGRLFI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M++V+S  R +L  + PR+  + IP D+I  +IG GGK IR I E TGA+++I+DDG
Sbjct: 541 LDKMNEVISAPRPELSIYAPRIMTIQIPVDKIGALIGPGGKTIRNICETTGAQIDIEDDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I +   A    A  MI  +T   +V  I+ G+VV +  FGAFV+    +DG+VH+S+
Sbjct: 601 RVFITTPDGAAARQAISMIEGLTREAKVGDIFLGKVVSIKPFGAFVNILPGKDGMVHVSE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           L  +RV    DVV  GD + V ++D D   GKI LS + V
Sbjct: 661 LDEKRVENVEDVVSLGDEINVMVIDIDRTTGKISLSRRAV 700


>gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
 gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
          Length = 689

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 306/683 (44%), Positives = 452/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF K  +NE  V+  VM  D +  P 
Sbjct: 64  YAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +  M+ ASAAL +S +P+ GP+ G ++  ING++++NP  ++ + + L++ V+GT+DA+L
Sbjct: 124 ICGMIGASAALSISDIPWNGPIAGVRMGRINGEFIVNPTKEQLEATDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++ E+ +L+ I+  H E K ++     +     KE  V +SKD  +++ E + 
Sbjct: 184 MVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDMKAKVGKEKRVFESKDVPAEIAEAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q  +++  ++++F   +   N  ++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQESEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    + Q +D 
Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY LR+
Sbjct: 363 IGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I PD+IR+VIG GGKVIRGI+++TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRGIIDETGAKIDIEDDGTVFIASVDQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G+I LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRINLSRK 685


>gi|296329277|ref|ZP_06871778.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153633|gb|EFG94450.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 699

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 306/701 (43%), Positives = 453/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E  GR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELVGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIV----- 292
            +++ +     E L+ +     K  R   +D L+++++  F    +    E E+      
Sbjct: 241 LVKDFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQKNYPDVPEEELPEDIIL 300

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QA + R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITKEIMRIALNQAHQARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI+EQTGA V+I D
Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIEQTGATVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   +++ S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLVDSYVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus
           iheyensis HTE831]
 gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain
           [Oceanobacillus iheyensis HTE831]
          Length = 705

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 302/690 (43%), Positives = 454/690 (65%), Gaps = 4/690 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E +G+   +E G +A+Q++GA +  YG+T VL+        KD   FFPLTVNY+ER YA
Sbjct: 11  EISGKKFTVEVGELAKQANGACMIHYGDTSVLSVATASSEPKD-LPFFPLTVNYEERLYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE RP+E  IL SR+IDR IRPLF   ++NE QVI  VM  D +    + 
Sbjct: 70  VGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQDCPSEIA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PFE P+ G  V  ++G++++NP ++++  S ++L V+GT+DA+ MV
Sbjct: 130 AMIGSSIALSVSDIPFEQPIAGVNVGRVDGEFIINPTIEQEAKSDIELTVAGTKDAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQM 247
           E  AN++ ED++L+AI+FGH E K ++    +L K C ++   V+ ++   +L E +   
Sbjct: 190 EAGANEVPEDIMLEAIMFGHEEIKRLVAFQEELVKACGQDKFDVVLAESEEELVENVHSE 249

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTV 306
            K+ +  +  + EK+ R + I   K ++V+++  +    +   ++ S+ + +  + VR +
Sbjct: 250 AKDKIVNAIQVQEKHARDEAIKQAKNEIVAHYEEQEVEEDVIKQVKSILDSMVKEEVRRL 309

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  +K+R DGR  + +R +S+++ +L RTHGS LF RG TQA+ V TLG   D Q +D L
Sbjct: 310 ITKEKIRPDGRKVDEIRPLSSRIHVLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL 369

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P   +FPYT+R+V
Sbjct: 370 DLEESKRFMHHYNFPQYSVGETGPIRGPGRREIGHGALGERALEKVIPDDKEFPYTIRLV 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK GDD+ IL+DI G ED L
Sbjct: 430 SEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDDYTILTDIQGMEDAL 489

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT +G+TA+QMD+KI G+S +I+  AL QAK+GR+ IL+ M   + E + +L
Sbjct: 490 GDMDFKVAGTANGVTALQMDIKIDGLSRDILEEALSQAKKGRMQILDSMLATIKEPKEEL 549

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            EF P++  MAI PD+IR+VIG  GK I  I+++TG K++I+ DG++ I+S+     + A
Sbjct: 550 SEFAPKILTMAIEPDKIRDVIGPSGKQINQIIDETGVKIDIEQDGSIFISSTDNEMNKKA 609

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +++I  +    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ER  K  DVV  
Sbjct: 610 KQIIEDLVREVEVGQIYLGKVKRIEKFGAFVELFKGKDGLVHISELAEERTNKVEDVVSI 669

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            D + VK+ + D +G++ LS K V Q+  K
Sbjct: 670 DDQIMVKVKEIDRQGRVNLSRKAVIQDEKK 699


>gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM
           245]
 gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM
           245]
          Length = 736

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 332/718 (46%), Positives = 469/718 (65%), Gaps = 37/718 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVG 71
           G+ + +ETG++A+Q+DG+V+   G+T+VLATVV  + +    QD+FPL V Y+E+  A G
Sbjct: 15  GKIISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAG 74

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RESRP+E EIL +R+IDR++RPLF   Y  ETQ+I+ V+  D  +   V+  
Sbjct: 75  KFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTVISSDQINDADVLGG 134

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           +AASAA+M+S +PF   +   +V  ING++++NP ++E   S LD+ + GT D + M+E 
Sbjct: 135 LAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDICIGGTTDTICMLEG 194

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMS 245
           E  ++SE  +LDAI FGH+  + +    +++A   AK      P VI S+    L + + 
Sbjct: 195 EMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAEVAKPARPFAPAVIPSE----LTDLVR 250

Query: 246 QMIKEDLRVSCFIP-EKYVRCKQIDDLKKKM----VSYFSSEHS------------SWNE 288
            + +  LR   + P  K  R +Q   + +++    V +F +  S              NE
Sbjct: 251 GLCETRLRELAYTPLRKEDRAEQTAAIYREIIQSTVEHFKAAISPEEIQADPSKALCLNE 310

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I      ++ KV+R ++LD   R+DGR  E VR IS ++G++ R HGS+LF RG+TQA
Sbjct: 311 HIIDEQIHAVEKKVMRHMILDDAKRLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQA 370

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +V +TLGT++D Q VD+L+      FM+HYNF P + GE  R+G+  RREIGHG LA RA
Sbjct: 371 LVTITLGTKKDAQSVDNLTNNADKKFMLHYNFPPFSVGETGRIGSTGRREIGHGNLAERA 430

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           I  V P   +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K
Sbjct: 431 IKMVAPPEQEFPYTVRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIK 490

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G ++ +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+QA+RGR
Sbjct: 491 EGSNYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILESALEQARRGR 550

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL++M + +  +R++L +F PR+  + +P D I  +IG GG+ IR I E+TGA++NI+
Sbjct: 551 LHILDKMEEAIPSARVELAQFAPRLTTIQVPVDAIGLIIGKGGETIRSITEETGAEINIE 610

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLV 647
           DDGTV IA SS+    AA   I+++   PEV  IY G+V  V D  GAFV F    DGLV
Sbjct: 611 DDGTVTIACSSVEGTHAALATIKTLLAKPEVGTIYLGKVRDVRDELGAFVEFLPKTDGLV 670

Query: 648 HISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVV--DQNTGKP 697
           HIS++S TERVAK SD +K GD + VKL+D   D R GK +  LSM+ V  D   G P
Sbjct: 671 HISEISATERVAKVSDHLKIGDRIKVKLVDVRKDPRTGKTRFALSMRAVETDAANGAP 728


>gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 758

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 317/699 (45%), Positives = 450/699 (64%), Gaps = 8/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    I+W GR L LETG+IARQ+DG+V+        L+     +  ++  DF PL 
Sbjct: 1   MFEIIKKSIDWEGRTLSLETGKIARQADGSVVVKLWRYFYLSHCCTKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178
           D  +SP V +++   AAL +SG+PF   + G  V    N  Y+LNP + E + S LDLF+
Sbjct: 120 DTVNSPEVPALIGTVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASNLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ VL+AI FGH   +PVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVLNAIKFGHEHLQPVIKLIKEFADTVGNKPESFAPVDIS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  ++D   +     K  R + ++ ++  +++    + +  +E  I    +  
Sbjct: 240 DITQELEKY-RKDFEEAYSKTVKQERVQALEVVRNNILNTL--KEAGKDEKLITYAVKSF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+D R  + +R I  +  +L +THGS+LF RG TQA+VV  LGT +
Sbjct: 297 ERSLVREMIRRKSVRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF P A GE S + AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPPFAVGEASAIRAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+S+ALMD GVPI  PVAGIAMGL+KD ++ IILSD
Sbjct: 417 FPYTIRVVSEIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKDKNEHIILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  GITA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R  + +  PRV    I  D+I   IG  GK IR + E++ AK+ I DDG V + + 
Sbjct: 537 ISEHRKDIKDHVPRVLSFYIDKDKISAAIGTKGKNIRSVCERSNAKIEIGDDGKVSVFAI 596

Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  E EAA+  MI SIT++ E   I   +VVK+      +     R G +HIS+++ + V
Sbjct: 597 SSTEAEAAKNMMIDSITEL-EQGSIIDAKVVKIEKSIVELELLNGRKGKMHISEVANQHV 655

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
               D++K+GDT    ++DF+  G  KLS + VDQ TG+
Sbjct: 656 ESIEDILKQGDTFKALIIDFEKGGCPKLSRRRVDQETGE 694


>gi|58698478|ref|ZP_00373385.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58535017|gb|EAL59109.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 677

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/681 (45%), Positives = 444/681 (65%), Gaps = 8/681 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GR L LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKK-EENVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E + S LDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  K D   +     K  R + ++ +++ +++    + +  +E  I    ++ 
Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  G+TA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE    + +  PR+    I  D+I   IG  GK IR + E++ AK+ I DDG V + ++
Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596

Query: 599 SLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  E E A+  MI SIT++ E   I   +VV++      + F   R G +HIS+++ E +
Sbjct: 597 SGTEAEIAKSMMIDSITEL-EQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHI 655

Query: 658 AKTSDVVKEGDTVWVKLLDFD 678
                V+K+ DT    ++DF+
Sbjct: 656 DSIESVLKQDDTFKALVIDFE 676


>gi|283850795|ref|ZP_06368081.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           FW1012B]
 gi|283573718|gb|EFC21692.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           FW1012B]
          Length = 762

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/698 (44%), Positives = 453/698 (64%), Gaps = 13/698 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           FD   +E    G  + LETGR+A Q+DGAV    G TVVL T    ++L + + FFPL V
Sbjct: 5   FDPIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTAC-TQALAEEKGFFPLVV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +YQE +YA G+IPG Y RRE  RP+E E+L+ R+IDR  RPLF K +++E Q+I  V+  
Sbjct: 64  DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS-LDLFV 178
           D +  P V+++ AAS AL +S +PF GP+ G +V YI+GQ+VLNP +   + G+ L+L  
Sbjct: 124 DGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++DAV+MVE     +SED++ DA+ +GH   +P+++   ++ +   K  I       +
Sbjct: 184 AASRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPAPN 243

Query: 239 K-LEEEMSQM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIV 292
           + LE  + Q     +KE   +   +P +  R      +   +V  F  + +     GE  
Sbjct: 244 EELEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMAAVVEAFPDQPTYKMKAGE-- 301

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            V E ++ K++R ++ +  +R+DGRD+++VR I  QVG+L RTHGS+LF RG+T+A+ V 
Sbjct: 302 -VLEAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVA 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ +++L+G     FM+HYNF P   GEV  +  PSRR+IGHG LA R++ PV
Sbjct: 361 TLGSTGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FP+T+R+VS++ ES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDD
Sbjct: 421 LPGPEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDD 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F+IL+DI GDED +G MDFKVAGT  GIT +QMD+KI GI + +M  AL QAK  RLHIL
Sbjct: 481 FLILTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQAKEARLHIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M++VL+  R +L    P++ ++ I P++IR VIG GGK I+ I  +TGA ++I+D G 
Sbjct: 541 GRMAEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGASIDIEDTGK 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I + +L  +E AR  +       +V   YKG+V K++D G  V      +GLVH+SQL
Sbjct: 601 ISIFAPTLESMEKARARVEYYDQHADVGANYKGKVKKIIDCGVIVEILPGLEGLVHVSQL 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             ERV    DVVK G  + VK+L+ +  G+I+LS K V
Sbjct: 661 DIERVESPFDVVKMGQELEVKVLEQEPSGRIRLSRKAV 698


>gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 754

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/693 (45%), Positives = 449/693 (64%), Gaps = 8/693 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           FDV ++  +  G  + +E+G+ ARQ+ GAV    G TV+L T    + ++  + FFPLT 
Sbjct: 5   FDVTSLTTQVGGIDITIESGKYARQASGAVTIKSGGTVILVTST-TQPIEVDRGFFPLTC 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE  YA G++PG Y RRE RP+E E LISR+IDR IRPLF+K + +E Q+I  V+  D
Sbjct: 64  NYQEMAYAAGRVPGNYFRREGRPSERETLISRLIDRPIRPLFAKGFADEVQIIATVLSAD 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVS 179
              +P V+++  ASAA  +S +PF GP+VGA+V Y++ Q+VL P     E+  SL+L  +
Sbjct: 124 KHVNPDVLALTGASAATHISKMPFLGPIVGARVGYVDNQFVLFPSYKGMEELSSLNLIFA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDF 237
            T++A++MVE  AN +SED+V DA+ +GH + KP+ +   +L  +    K  I    +D 
Sbjct: 184 ATREAMVMVEGGANFVSEDLVADALAWGHEQVKPLFDIQDELRSLVGVPKMEITAPIQD- 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVF 295
           ++L   + + I +DLR +   PEK VR    D  K+K     + +    +     +  + 
Sbjct: 243 AELVSFLGEFISDDLRAAVTTPEKMVRYAAKDAAKQKAKQAVAEKFPEDAAKLKAVSDIV 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D+  K+VR  ++ + +R+DGRD+ TVR +S + G+L  THGS LF RG+T A+ V TLG
Sbjct: 303 GDLTKKIVRERIVKEGLRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ  DSL G     FM+HYNF P   GE   +   SRRE+GHG LA RAI PVLP 
Sbjct: 363 STRDEQRYDSLLGDATKRFMLHYNFPPYCVGEARMLRGTSRREVGHGALAERAIAPVLPN 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FP+T+R+VSEI ES+GSSSMA+VCG++L+LMDAGVPIS PVAGIAMGL K+ + F +
Sbjct: 423 QDEFPFTIRVVSEIMESNGSSSMASVCGATLSLMDAGVPISAPVAGIAMGLCKENEQFFV 482

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED LG MDFKVAGT  GIT++QMD+KI GI  +++  AL QAK  R+HIL+ M
Sbjct: 483 LTDILGDEDALGDMDFKVAGTRDGITSIQMDIKISGIPSDVLRKALYQAKDARVHILDHM 542

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++VL+E R +L +  P++ I+ I P++IR+VIG GGK I+ I  +T A ++I+D G + I
Sbjct: 543 AEVLAEPRAELSDLAPQMAIVHIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGKISI 602

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +LA +E A+ M+      PE  K Y G V KV++ GA V     ++G++H+SQL  E
Sbjct: 603 FAPTLASMEKAKAMVLYYDQKPEPGKDYLGTVRKVLEVGALVEILPGQEGMLHVSQLDIE 662

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV +  DVV+ G  VWV  +  +  G+I+LS K
Sbjct: 663 RVERVEDVVQLGQEVWVTCIALEPGGRIRLSRK 695


>gi|258645480|ref|ZP_05732949.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
           15470]
 gi|260402833|gb|EEW96380.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
           15470]
          Length = 694

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/689 (43%), Positives = 453/689 (65%), Gaps = 9/689 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L +ETG++A+Q+ GAVL  YGETVVL T    +  ++G DFFPLTV+Y+E+ Y
Sbjct: 7   MELAGRSLIVETGKMAKQASGAVLVRYGETVVLVTSTASKEAREGMDFFPLTVDYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGK+PGG+LRRE RP  + IL +R+IDR IRPLF K  +N+  V+  V+  D +++P +
Sbjct: 67  AVGKMPGGFLRREGRPGNSAILNARLIDRPIRPLFDKRCRNDIHVMATVLSVDYDNAPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
             M+ ASA+L +S +P++GP+ G +V  ++G++V+NP  ++ +  +L++ V+G++ A+LM
Sbjct: 127 CGMLGASASLGISDIPWDGPIAGVRVGCVDGKFVINPTQEQLKVSTLNITVAGSETAILM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE  A +  E+ VLDAI+FGH   K ++    K+ +   K    +    F ++ EE+   
Sbjct: 187 VEGGAQEAPEEDVLDAIMFGHETIKELVAFQKKIIEEVGKPKRTLI---FPEIPEEIKTA 243

Query: 248 I----KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           I    +  L+ + F P+K  R   +++++K+  ++F  E    N  +I      +  ++V
Sbjct: 244 IYAYAERPLKEAIFNPDKLTREAHMEEVRKEAEAHFK-EIYPENGSDIAECLNHLTKEIV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++   K+R DGR  + +R IS +VGLL R HGS+LF RG TQA+ + TL    + Q +
Sbjct: 303 RHMISVDKIRPDGRALDEIRPISCEVGLLPRVHGSALFTRGQTQALTITTLAPMSETQII 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+      ++  YNF   + GE      P RREIGHG LA RA+ PV+P   +FPY +
Sbjct: 363 DDLTQETEKRYIHQYNFPSYSVGETKSSRGPGRREIGHGALAERALIPVIPTVEEFPYAI 422

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSS A+VCGS+++LM+AGVPI  PVAGIAMGLV +G+ F +L+DI G E
Sbjct: 423 RVVSEILESNGSSSQASVCGSTMSLMNAGVPIKAPVAGIAMGLVNEGEHFTVLTDIQGME 482

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G+S  I++ ALQQA++GR+ IL +M++ + +  
Sbjct: 483 DALGDMDFKVAGTAKGITAIQMDIKIHGLSREILLAALQQAQKGRMFILGKMAECIDKPA 542

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             L  + P++  + IP D+IR+VIG GGK+I  I+ +TG K+++++DG V IA+      
Sbjct: 543 EHLSPYAPKIITLTIPVDRIRDVIGSGGKIINKIISETGVKMDVEEDGHVYIATPDEEAA 602

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A++ +  +T   +V + Y G+V ++M FG FV     ++G+VH+SQL+T RV K  DV
Sbjct: 603 QRAKKWVEELTHEVQVGETYLGKVTRLMKFGVFVEILPGKEGMVHVSQLATRRVEKPEDV 662

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V EGD + VK+ + DD+G+I LS K + Q
Sbjct: 663 VHEGDEIMVKVTEIDDKGRINLSRKALLQ 691


>gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           aestuarii DSM 271]
 gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris
           aestuarii DSM 271]
          Length = 734

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/702 (44%), Positives = 460/702 (65%), Gaps = 24/702 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAV 70
           +G+ L +ETG++A+Q+DG+ +    +T+VLATVV  ++     Q FFPL V Y+E+  A 
Sbjct: 13  SGKTLSIETGKMAKQADGSAIVRLNDTMVLATVVSSKTPPSPNQSFFPLQVEYREKYSAA 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  +TQ+II+V+  D  +   V+ 
Sbjct: 73  GKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQDTQIIISVISSDQINDADVLG 132

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189
            VAASAA+M+S +PF+  +   +V  +NG+Y++NP ++E + S +D+ + GT++ + M+E
Sbjct: 133 GVAASAAIMVSDIPFQNSMSEVRVGRVNGEYIVNPNINELRDSDIDISIGGTENTICMLE 192

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQMI 248
            E +++SE  +L+AI FGH   K +    +++A    K      + K    L + ++++ 
Sbjct: 193 GEMDEISEAEMLEAIRFGHEAIKKICALQNEIAAEVGKTARTFSAAKAPDNLRQSIAEIC 252

Query: 249 KEDLRVSCFIP----EKYVRCKQI-DDLKKKMVSYFSSEHSS------------WNEGEI 291
             +L+   ++P    E+  +  +I  + K + +  +  E +              NE  I
Sbjct: 253 SNELKELAYMPLCKEERAEKTAEIYKNAKAQTLQRYQQEITPEVIAAEPEKALYLNEQII 312

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                 I+ +V+R ++LD   R+DGR  + VR IS ++GL+ R HGS+LF RG+TQA+V 
Sbjct: 313 GDAIHSIEKQVMREMILDDAKRLDGRRLDEVRPISIELGLIPRAHGSALFTRGETQALVT 372

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT++D Q +D+L+      FM+HYNF P + GE  R+G  SRREIGHG LA RAI  
Sbjct: 373 LTLGTKKDAQMIDTLTDDADKRFMLHYNFPPFSVGETGRVGGTSRREIGHGNLAERAIRK 432

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V P  + FPYT+RIVS+I ES+GSSSMA+VCG +LA MD GVP+ KPV+GIAMGL+K+GD
Sbjct: 433 VAPAESAFPYTIRIVSDILESNGSSSMASVCGGALAAMDGGVPLRKPVSGIAMGLIKEGD 492

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  AL+QA  GRLHI
Sbjct: 493 RYAVLSDILGNEDHLGDMDFKVAGTADGITACQMDIKIDGLDYHILEQALEQALHGRLHI 552

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M++ + E R ++G++ P++  + IP D I  VIG GG+ IR I E+TGA++NI+DDG
Sbjct: 553 LDKMNEAIQEPRTEIGKYAPKLTTIQIPVDAIGMVIGKGGETIRSITEETGAEINIEDDG 612

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHIS 650
           TV IAS+S     AA E I+ +   PEV  +Y G+V  +  D GAFV F    DGLVHIS
Sbjct: 613 TVTIASASGEGASAALETIKLLISKPEVGTVYSGKVRDIREDLGAFVEFLPKTDGLVHIS 672

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIKLSMKV 689
           ++S ERVAK SD +K GD V VKL+D   D R GK + ++ +
Sbjct: 673 EISNERVAKVSDHLKPGDKVKVKLVDVRKDPRTGKTRFALSI 714


>gi|307278201|ref|ZP_07559283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0860]
 gi|306505190|gb|EFM74378.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0860]
          Length = 694

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/686 (43%), Positives = 447/686 (65%), Gaps = 9/686 (1%)

Query: 13  GRPLKLETGR-IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           GRP      R I+++++GAVL  YG+TVVL+  V  +  KD  DFFPLTVNY+E+ YAVG
Sbjct: 2   GRPPTRSRNRPISQKANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLTVNYEEKMYAVG 60

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  + + +P + +M
Sbjct: 61  KIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEMAAM 120

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
             +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+GT++A+ MVE 
Sbjct: 121 FGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAGTKEAINMVES 180

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMIK 249
            A ++SE+ +L A++FG +  K ++    ++     K  + +D     + L++E+     
Sbjct: 181 GAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDADLKKEIFDAYY 240

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVR 304
             ++ +    EK  R  +ID +K  +   ++ + +   E      E+  + ED++  VVR
Sbjct: 241 NTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQIAEDLEKDVVR 300

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V TL    + Q +D
Sbjct: 301 ELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIID 360

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++P    FPYT+R
Sbjct: 361 GLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIPSEEDFPYTIR 420

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++ IL+DI G ED
Sbjct: 421 LVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYTILTDIQGLED 480

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL E++  ++  R 
Sbjct: 481 HLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEELTTTIAAPRE 540

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L ++ P++EI+ I P +I++VIG GG+ I  I+++TG K++ID DG V IASS    I+
Sbjct: 541 ELSQYAPKIEIIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVSIASSDAEMIK 600

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+ ERV    DVV
Sbjct: 601 KAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLANERVNNVEDVV 660

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD V VK+ + D +G++ +S K +
Sbjct: 661 KLGDEVLVKVTEIDKQGRVNVSRKAL 686


>gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
 gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
          Length = 700

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/688 (44%), Positives = 439/688 (63%), Gaps = 10/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +EWAGR L  E G+ A+Q++GAV+  YG+T VL+T    +  KD   FFPLTVNY+ER Y
Sbjct: 10  MEWAGRTLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKD-LPFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE RP++N +L SR+IDR IRPLF   Y+N+ QVI  VM  D  +S  +
Sbjct: 69  AAGKIPGGFIKREGRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQNASSEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S AL +S +PF GP+ G  V  +NG++++NP   +   S +DL V+GT+DAV M
Sbjct: 129 AAMIGSSMALSISDIPFGGPIAGVTVGRVNGEFIINPTTTQMADSDIDLIVAGTKDAVNM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           VE  A Q+ E+ ++DAI+FGH+E K ++    E I+++ K   +  ++    D   LE E
Sbjct: 189 VEAGAEQVPEEDMMDAILFGHDEIKRLVAFQEEIIAEVGKPKMEVQLLTTDAD---LETE 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK-MVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           + +     L  +  + EK  R   I D+  + M+ Y + +       E+  +   +  + 
Sbjct: 246 LREKAYGKLTEAAKVVEKAAREDAISDVYDEIMLDYVTEQPEEDRSKEVKEILNKLLKET 305

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++  + +R DGR  + +R +S++V +L R HGS LF RG TQA+ V TLG   D Q 
Sbjct: 306 VRELITKENIRPDGRKVDEIRPLSSEVDILPRAHGSGLFTRGQTQALSVCTLGALGDVQI 365

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P    FPYT
Sbjct: 366 LDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEQVIPSEKDFPYT 425

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S++A+M AGVPI+ PVAGIAMGLVK G+D  +L+DI G 
Sbjct: 426 IRLVSEVLESNGSTSQASICASTMAMMAAGVPITSPVAGIAMGLVKHGEDMTVLTDIQGM 485

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT  G+TA+QMD+KI GI+  ++  AL+QA+ GRL IL+ M   + E 
Sbjct: 486 EDALGDMDFKVAGTKDGVTALQMDIKIEGINREVLKSALEQARDGRLKILDNMLSAIPEP 545

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L E+ P+++ M I PD+IR+VIG  GK+I  I+E+TG K++I+ DGTV I+   +  
Sbjct: 546 RDELSEYAPKIKTMNIHPDKIRDVIGPSGKIINKIIEETGVKIDIEQDGTVFISGLDVDM 605

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I  A   I  I    EV + Y G+V ++  FG FV     +DGLVHISQL+ ERV K  D
Sbjct: 606 IHKALSTIEEIVREVEVGETYLGKVKRIEKFGCFVEIFKGKDGLVHISQLANERVGKVED 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GD + VK+ + D++G++ LS K V
Sbjct: 666 VVSIGDELLVKVTEIDNQGRVNLSRKAV 693


>gi|258404622|ref|YP_003197364.1| polynucleotide phosphorylase/polyadenylase [Desulfohalobium
           retbaense DSM 5692]
 gi|257796849|gb|ACV67786.1| polyribonucleotide nucleotidyltransferase [Desulfohalobium
           retbaense DSM 5692]
          Length = 742

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 311/698 (44%), Positives = 454/698 (65%), Gaps = 12/698 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F   +V     G+ + +ETGR+A Q++GAV    G TVVL T V     +D  DF PL 
Sbjct: 6   IFGSTSVSTTLQGQDILIETGRLANQANGAVWVQSGGTVVLVTAVTQPVTRD-IDFMPLV 64

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V+YQE +YA G+IPG Y RRE  RP+E E L+SR+IDR IRPLF   +++E Q+I  V+ 
Sbjct: 65  VDYQEMSYASGRIPGNYFRREIGRPSERETLVSRLIDRPIRPLFPAGFRDEVQIIATVLS 124

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
              E +P V+++  ASAA+ +S +PF+GP+ G +V  ++G++VLNP  +E + S L+L +
Sbjct: 125 AAPEVNPDVLALTGASAAMHISDIPFDGPIGGIRVGQVDGEFVLNPSQNELENSDLNLVL 184

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           +G++DAV MVE   N + ED + +AI +GH + + +++   +L +      I + + +  
Sbjct: 185 AGSRDAVTMVEGGGNFVPEDRMAEAITWGHEQVQALLQLQDELREKIGAPKIAVQAPEAD 244

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIV 292
           ++LE  +  +   +L  +  +P K  R      +K K+++    E +   E     G+I 
Sbjct: 245 TELESRVHDLAGSELAEALQVPNKLERKTAKKTVKDKVMATLEQEFAEEPERLKGAGKI- 303

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             FE ++  +VR  + + K R+DGRD  TVRD++ +   L RTHGS++F RG+T+ + V 
Sbjct: 304 --FEALEKDIVRKRVKETKTRIDGRDLTTVRDLNIETSSLPRTHGSAIFARGETKVLSVA 361

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ ++ L G     FM+HYNF P   GEV  M  P+RREIGHG LA RA+ PV
Sbjct: 362 TLGSSRDEQRIEMLDGELNKRFMLHYNFPPYCVGEVKMMRGPARREIGHGALAERALTPV 421

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FP+T+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+S PVAGIAMGL+K+ D+
Sbjct: 422 LPTEDEFPFTMRVVSEVMESNGSSSMATVCGTSLSLMDAGVPVSAPVAGIAMGLIKEEDE 481

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++L+DI GDEDHLG MDFKVAGT  GITA+QMD KI GI   ++  AL QA   RLHIL
Sbjct: 482 FLVLTDILGDEDHLGDMDFKVAGTAEGITAIQMDSKIAGIPPEVLKRALNQAMDARLHIL 541

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M+ VL  +R +L E  P++EI+ +  ++I++VIG GGK I+ I + TGA ++I+D G 
Sbjct: 542 DNMNTVLPAARAELSEHAPQLEIVEVDTERIKDVIGPGGKNIKAITQATGASIDIEDSGR 601

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I + +   ++ A +M+       EV K Y+G V ++M+FGAFV      +GL+HISQL
Sbjct: 602 ISIFAPNQQALQEAVDMVLFYDQKAEVGKDYEGTVKRIMNFGAFVEILPGLEGLLHISQL 661

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +RV +  DVVK GD+V VK+++    GKI+LS K V
Sbjct: 662 DQQRVEQVEDVVKVGDSVKVKVIEQSGDGKIRLSRKAV 699


>gi|294784756|ref|ZP_06750044.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_27]
 gi|294486470|gb|EFG33832.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_27]
          Length = 699

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 310/708 (43%), Positives = 453/708 (63%), Gaps = 27/708 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGSDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I     +F K
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENI-----EFEK 235

Query: 240 LEEEMSQMIK--------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGE 290
              E+  ++K        E L+ +     K  R   +D L+++++  F  E +    E E
Sbjct: 236 --PEVLTLVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEE 293

Query: 291 IV--------SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +         + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF 
Sbjct: 294 LPEDIILEFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFT 353

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ++ + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG
Sbjct: 354 RGETQSLAITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHG 413

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGI
Sbjct: 414 SLAERALSYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGI 473

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL 
Sbjct: 474 AMGLIKEGEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALN 533

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   R+ IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG
Sbjct: 534 QAHEARIQILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTG 592

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           + V+I DDG V + +     +E   ++I       E  ++Y+G+VV +M FGAF+     
Sbjct: 593 STVDITDDGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPG 652

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++GL+HIS++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 653 KEGLLHISEISPERVDKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|237742790|ref|ZP_04573271.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           4_1_13]
 gi|256846116|ref|ZP_05551574.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_36A2]
 gi|229430438|gb|EEO40650.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           4_1_13]
 gi|256719675|gb|EEU33230.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_36A2]
          Length = 699

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292
            ++  +     E L+ +     K  R   +D L+++++  F  E +    E E+      
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 300

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPVPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG+ V+I D
Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I       E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 660 SEISPERVDKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 703

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 311/700 (44%), Positives = 455/700 (65%), Gaps = 19/700 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V   ++E AGRPL +E G++A+Q++GA L  YG+TVVL T    +  ++G DFFPLTV+Y
Sbjct: 3   VKKYQMEVAGRPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE R T    L +R+IDR IRPLF K ++NE  V+  ++  + +
Sbjct: 63  EEKQYAVGKIPGGFIKREGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           ++P V ++  AS AL +S +PF GPV    V  ++G+ ++NP +++ Q S L L V+GT+
Sbjct: 123 NAPDVTAITGASVALSISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAVAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI---EAISK---LAKMCAKEPIVIDSKD 236
           +A++MVE  AN++ E+ + DAI F H E K ++   E I +   L+KM  + PI +D + 
Sbjct: 183 EAIMMVEGGANEVPEETMRDAIFFAHEEIKKIVDFQENIIREVGLSKMQVEIPI-LDEEI 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              + E  + + +E ++     P+K  R  Q+D  +K ++ +F+ E     E  I  V +
Sbjct: 242 KKAVVEFATPLFEEAVKN----PDKKTREDQMDSSQKSVLQHFT-ESYPEEEKLIADVSD 296

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +    VVR + L++  R+DGR  + +R +S +VG L R HGS LF RG TQ + V TLG 
Sbjct: 297 ETMKAVVRKMALEEGERVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGA 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             +EQ +D L   ++  ++ HYNF P +TGE   M  P RREIGHG LA RA+  V+P  
Sbjct: 357 ISEEQRLDGLGIEEKKRYIHHYNFPPYSTGETKPMRGPGRREIGHGALAERALLAVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSE+ ES+GSSSM +VCGS+L+LM AGVPI  PV+GIAMGLVK+G+ F I+
Sbjct: 417 EEFPYTIRVVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKAPVSGIAMGLVKEGERFAIM 476

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED LG MDFK+AGT+ G+TA+QMD+KI G++  I+  AL+QA+ GR+ IL +M 
Sbjct: 477 SDIQGIEDALGDMDFKLAGTEKGVTALQMDIKITGVNREIVEAALKQAREGRMFILKKML 536

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + +   +L  + P++  M I PD+IR VIG GGK I  IV++TG K++I+DDG++ I 
Sbjct: 537 EAIDKPNEELSPYAPQMIRMQIDPDKIREVIGPGGKTIHKIVDETGCKIDIEDDGSLFIM 596

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHIS 650
           ++     + AR  + SI    EV K Y G V ++MDFGAFV           ++GLVHIS
Sbjct: 597 ATDEEAAKKARFFVESIVAEVEVGKTYMGTVKRIMDFGAFVEIIPGVLGTSGKEGLVHIS 656

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           QL+ ERV K  DVV  GD + VK+ + D +G++ LS K V
Sbjct: 657 QLAEERVNKVRDVVDIGDQILVKVTEIDRQGRVNLSRKAV 696


>gi|51892669|ref|YP_075360.1| polynucleotide phosphorylase/polyadenylase [Symbiobacterium
           thermophilum IAM 14863]
 gi|81388937|sp|Q67P77|PNP_SYMTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51856358|dbj|BAD40516.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM
           14863]
          Length = 762

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 312/707 (44%), Positives = 448/707 (63%), Gaps = 21/707 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E  GR + LETGR+A+Q+ G+VL  YG++VVL T V   + ++G DFFPLTV+Y+ER Y
Sbjct: 23  MELGGRTMTLETGRLAKQASGSVLVNYGDSVVLCTAVGSATPREGVDFFPLTVDYEERMY 82

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VG+IPG + RRE RPT   IL +R+ DR IRPLF + ++N+ QV+  V+  D +    +
Sbjct: 83  SVGRIPGNWFRREGRPTSKAILWARLTDRPIRPLFPEGFRNDVQVVCTVLSVDPDHPVEI 142

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           + M+ ASAAL +S +PFEGP+ G  V  ++GQ+V+NP  ++ + S + L V+GT+ AVLM
Sbjct: 143 MGMIGASAALTISDIPFEGPIGGVIVGLVDGQFVINPTAEQQERSEMHLVVAGTEHAVLM 202

Query: 188 VELEANQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           VE  A ++ E  +LDAI+FGH    N   P I+ +        +E ++ +     +LE+ 
Sbjct: 203 VEAGAKEVPEQTMLDAILFGHEVIKNTIIPTIKQMQAEVGKPKREVVLFNPP--PELEQA 260

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           + +     LR +   P+K  R + +  + + + +  + E    +E  I  + + +  + V
Sbjct: 261 VREAATVRLREAVRNPDKLAREEAVAAVGEAVQAELA-EQFPESEKHIAYLLKKVLKEEV 319

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++++ +R DGR    +R I   V LL R HGS LF RG TQ + + TLGT  D Q +
Sbjct: 320 RRAIIEEGIRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQKL 379

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+  +   FM HYNF P + GE   +  P RREIGHG LA RA+ PV+P   +FPYT+
Sbjct: 380 DDLTLEETKRFMHHYNFPPYSVGETRPLRGPGRREIGHGALAERALEPVIPPEEEFPYTI 439

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISG 481
           R+VSE+ ES+GSSSMA+VCGS+LALM AGVPI  PVAG+AMGLV+D +   + +L+DI G
Sbjct: 440 RVVSEVLESNGSSSMASVCGSTLALMAAGVPIKAPVAGVAMGLVEDPETGRYAVLTDIQG 499

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  G+TA+QMDMKI G S  I+  AL QA+ GR+ I+ +M   +SE
Sbjct: 500 IEDALGDMDFKVAGTKKGVTALQMDMKISGTSREILEKALMQAREGRMFIMEKMLACISE 559

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ-----TGAKVNIDDDGTVKIA 596
            R +L  + PR+  M I P++IR+VIG GG  I  I+E+     T  +++I DDGT+ IA
Sbjct: 560 PRKELSPWAPRIITMKISPEKIRDVIGKGGSTINKIIEETKVGHTKVEIDIQDDGTIYIA 619

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           + +L   E AR+MI ++   PE   IY G+V ++M FGAFV     ++GLVHIS+LS +R
Sbjct: 620 AVNLEAGERARQMIEALVKDPEPGMIYTGRVTRLMQFGAFVEILPGKEGLVHISELSDKR 679

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK------VVDQNTGKP 697
           VA+  DVV  GD V VK+ + D  G+I LS+K         Q +G+P
Sbjct: 680 VARVEDVVNIGDEVTVKVTEIDRLGRINLSIKDAMPKQAASQPSGRP 726


>gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 716

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/685 (43%), Positives = 443/685 (64%), Gaps = 3/685 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E+AGR L +E G++A+Q+ GA L  YG+T V  T    +  ++  DFFPLTV+Y+E+ 
Sbjct: 7   QMEFAGRTLTVEVGKLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTVDYEEKM 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P E+  L +R+IDR IRPLF K Y++E  V+      D +++P 
Sbjct: 67  YSVGKIPGGFIKREGKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVDHDNAPE 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ AS +L +S +PF GP+ G +V  ++GQ+V+NP + + + S +D  V+GT+DA+L
Sbjct: 127 IAAMIGASVSLCMSHIPFAGPIAGVRVGRVDGQFVINPTVVQSEKSDMDFVVAGTKDAIL 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIE-AISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           MVE  A Q+ E  +LDAI+  H E K  +    S L  +   +   ++++  + + E + 
Sbjct: 187 MVEGGAEQVPEADILDAIMVAHEEIKKAVAFQESFLDAVSVPKQEFVEAEPPADMVEAVH 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
              +  ++ + F  +K  R ++++ ++  +  +FS  +   +   + ++ + +  ++VR 
Sbjct: 247 AYGEAAMKEAVFTADKMAREEKMNAVETDIYEHFSDIYPE-DAAVVAAITQKMIKEIVRH 305

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++   K+R DGR  + VR +S +VGL  RTHG+ LF RG TQ +   TL    + Q++D 
Sbjct: 306 MIAVDKIRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPLSEAQHIDG 365

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       +M HYNF   + GE      P RREIGHG+LA RA+  VLP   +FPY +R+
Sbjct: 366 VGLETDRRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALVQVLPSEEEFPYAIRV 425

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSM +VCGS+LALMDAGVP+  PVAG+AMGLV  G+DF IL+DI G ED 
Sbjct: 426 VSEVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGEDFTILTDIQGMEDA 485

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+   I+  ALQQA  GRLHI+ +M   +S  R  
Sbjct: 486 LGDMDFKVAGTTKGVTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKMLTAISAPRKT 545

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F PR+  M I PD+IR+VIG GGK+I+ I E+TGAK++IDD G V IAS   A  + 
Sbjct: 546 LSPFAPRIITMQIHPDKIRDVIGPGGKIIKQITEETGAKIDIDDTGLVYIASVDAAGGDQ 605

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+  I  +T   EV + Y+G+V ++M+FGAFV     ++GLVHISQL+ ERV K  DVV 
Sbjct: 606 AKAWIERLTKDVEVGETYEGKVTRLMNFGAFVEVLPGKEGLVHISQLANERVEKVEDVVH 665

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VK ++ D +G+I LS KV+
Sbjct: 666 VGDEIMVKCIEIDSQGRINLSRKVL 690


>gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
 gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
          Length = 696

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/682 (42%), Positives = 464/682 (68%), Gaps = 3/682 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E+AG    +ETG++A+Q++G+V+   G++ VL T   D   + G ++FPL VNY+ER Y
Sbjct: 6   LEYAGSDFHIETGKLAKQANGSVMVRSGDSQVLVTATMDEP-RPGMNYFPLMVNYEERVY 64

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A+GKIPGG LRRE RP +   L +R+IDRSIRPLF   Y+ + QV+  ++  D +  P +
Sbjct: 65  AIGKIPGGVLRREGRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEM 124

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +++  AS AL +S +PF+GP+ G +V  ++G+ ++NP  +E + S LDL V+G++DA++M
Sbjct: 125 LALNGASIALTISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSELDLVVAGSKDAIMM 184

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQ 246
           VE  AN++ E V+L+A+   H E + +I+    + +   KE  + I+     +L E++ +
Sbjct: 185 VEASANEVEEAVILEAMDLAHQEIQKMIKIQKTIREEAGKEKEVFIEPTVDDELAEKVEE 244

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           ++ + L+ +  I +K  R ++I  LK ++    + +     + ++   FE++  K V+++
Sbjct: 245 LLGDRLKEAIQIQKKQARGEKIASLKAELKENLNPDEDEDIDSQLNLAFENMIKKSVKSL 304

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++D  +R DGR+ + +R I A+VG++ R+HGS +F RG+TQA+ V+TLG   DEQ +  L
Sbjct: 305 IIDDGIRPDGREHDEIRPIWAEVGVVPRSHGSGVFTRGETQALSVLTLGASSDEQILFGL 364

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +   +M HYNF     GE S M +P RREIGHG L  +A+ PV+P+   FPYT+RIV
Sbjct: 365 GEKETKRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLGEKALLPVIPEKDDFPYTIRIV 424

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+ ES+GSSS A++CGS+L+LMDAGVPI  PV+GIAMGL+K  D+ ++LSDI G ED  
Sbjct: 425 SEVLESNGSSSQASICGSTLSLMDAGVPIKAPVSGIAMGLMKKDDEIVVLSDIQGFEDFH 484

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT++G+TA+QMDMK+ G+S++++  AL +AK+GR+HI+ +M +V++E R +L
Sbjct: 485 GDMDFKVAGTENGVTALQMDMKLKGLSKDVLEEALNKAKKGRMHIMEKMLEVIAEPRPEL 544

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            +  P +  M I P++IR VIG GGK I  I+++TGA+++IDDDGTV I +      + A
Sbjct: 545 SKNAPALISMKINPEKIRFVIGPGGKTINEIIDKTGAQIDIDDDGTVMILTDDQESGKEA 604

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++M+ ++T   EV +IY+G V ++M+FGAFV     ++GLVHIS+++   + + SDV+  
Sbjct: 605 KKMVENLTKEVEVGEIYQGTVKRIMNFGAFVEILPNKEGLVHISKIADRHIKEVSDVLSV 664

Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688
           GD + VK+++ D++ +I LS+K
Sbjct: 665 GDEIPVKVIEIDNQDRINLSLK 686


>gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
 gi|169293219|gb|EDS75352.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
          Length = 710

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/691 (44%), Positives = 455/691 (65%), Gaps = 10/691 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +++ G+ L +E G +A+Q++G+VL  Y +TV+L+TVV  +  KD  DFFPLTV Y+E+ Y
Sbjct: 8   MDFYGKNLSVEIGELAKQANGSVLVRYNDTVILSTVVAGKEPKD-VDFFPLTVTYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE Q +  V+  D ++SP +
Sbjct: 67  SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDASPEM 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187
            +M+ AS AL +S +PF GP+ G  V  ++G++++N   ++ + SL +L V+GT+DA+ M
Sbjct: 127 AAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLERSLINLEVAGTKDAINM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE +A ++SE+V+L+A++FGH + K +I    K+ + C KE + I   +  S L +E++ 
Sbjct: 187 VEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKLEIPLFELDSNLVDEVTS 246

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300
             K+ +  +  IP K  R   ID L +++ + + ++    ++       ++  +  D++ 
Sbjct: 247 RAKDQMVAAVSIPGKLERYGAIDALIEEVTNEYDNKEYENDDIKANVMKQVGIILHDLEK 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++  +K+R DGR  + +R + +Q+ LL R HGS+LF RG+TQ + V TLG   + 
Sbjct: 307 DEVRRLITVEKIRPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEH 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L    +  FM HYNF P + GEV RMGAP RREIGHG L  RA+  V+P    FP
Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGEVGRMGAPGRREIGHGALGERALAQVIPGEDVFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSS A++C SS+ALM AGVPI  PVAG+AMGLVK GDD+ IL+DI 
Sbjct: 427 YTIRVVSEVLESNGSSSQASICASSMALMAAGVPIKAPVAGVAMGLVKKGDDYTILTDIQ 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGTD GI A+QMD+KI GI++ I+  AL QAK  R  I+  M  V++
Sbjct: 487 GMEDHLGDMDFKVAGTDEGICALQMDIKIDGITKEILQEALAQAKVARREIMANMMAVIN 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSS 599
           E R +L  + P+V+++ I  DQI++VIG GGK I  I+EQ+ G K++I+ DGTV +    
Sbjct: 547 EPRKELSPYAPKVQMIKIGTDQIKSVIGQGGKTINEIIEQSDGVKIDIEQDGTVIVYHHD 606

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I  A  +I  I    +V ++Y G+VV+V D  AFV+     D  +HIS  + ER+ K
Sbjct: 607 QEAINKAIALIEKIVKKAKVGEVYDGKVVRVEDNYAFVNLFEGTDAFLHISDYNHERIKK 666

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SDVVK GD + VK+   DD+GK+ +S K +
Sbjct: 667 MSDVVKLGDILKVKVTKVDDKGKVNVSRKAL 697


>gi|148655103|ref|YP_001275308.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus sp. RS-1]
 gi|187611283|sp|A5URV5|PNP_ROSS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148567213|gb|ABQ89358.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus sp. RS-1]
          Length = 747

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/700 (44%), Positives = 464/700 (66%), Gaps = 18/700 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+V +E AGR L LE GR A Q++GAV+  YG+T++LAT V  +  +   DFFPLTV+Y
Sbjct: 6   IHSVSMELAGRTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPG + +RE +PT++ IL +R+ DR +RPLF + Y+NE Q+I+     D+ 
Sbjct: 66  EEKMYAAGKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMV 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQ 182
           + P  ++++ ASAAL +S +PF GPV   QV YI+G+  +NP + D     LDL V+GT+
Sbjct: 126 NDPAPLAIIGASAALAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237
           DAVLMVE  A +L ED++L+AII GH  CK + +  ++L ++  +      P  +D+   
Sbjct: 186 DAVLMVEAGAKELPEDLMLEAIIQGHQVCKQICDLQNELVRLAGRPKREFVPPPVDTS-- 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSV-- 294
             LEE + Q +   L  +   P K VR  Q + LK++++++F+++      E  I +V  
Sbjct: 244 --LEEAIQQWLGNRLYEAITDPNKMVRDAQTEALKQEVIAHFTADEPEEELEARIAAVST 301

Query: 295 -FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            FE++  + VR ++L++  R+DGR  + +R IS +VGL+ R HGS LF RG TQ + + T
Sbjct: 302 AFENLLYEEVRRMILERGERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLAT 361

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  +EQ +D L       ++ HYNF P +TGEV R+G+P RR+IGHG LA R++  VL
Sbjct: 362 LGSPAEEQRLDDLGIETTKRYIHHYNFPPFSTGEVRRLGSPRRRDIGHGALAERSLLAVL 421

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471
           P   +FPYT+R+VSE   S+GSSSMA+VCGSSLALMDAGVPI  PVAG+AMGL+  KDG 
Sbjct: 422 PSKEEFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKDG- 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI G EDHLG MDFKVAGT  G+T +Q+D+K  GI+  IM  A  QA+ GRL+I
Sbjct: 481 RWRVLTDIQGIEDHLGDMDFKVAGTAKGVTGLQLDIKTTGITYEIMREAFAQAREGRLYI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M+ V+SE R +L  + PR+  + I P++I  +IG GGK +RGI E TGA+++I++DG
Sbjct: 541 LDKMNAVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTVRGITEATGAQIDIEEDG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I++   A  + A  M+ ++T   +V  I+ G+VV++M FGAFV+    +DG+VH+S+
Sbjct: 601 RVYISTPDAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           L   RV    DV+K GD + V ++  +   GK+ LS + +
Sbjct: 661 LDVGRVENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRAL 700


>gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 689

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 303/683 (44%), Positives = 453/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA+G++PGG+++RE+RP E+ IL SR+IDR IRPLF K  +NE  V+  VM  D +  P 
Sbjct: 64  YAIGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186
           +  M+ ASAAL +S +P+ GP+ G ++  +NG++V+NP +   ++  L++ V+GT+DA+L
Sbjct: 124 ICGMIGASAALSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++ E+ +L+ I+  H E K ++     +     KE  V +SKD  +++ + + 
Sbjct: 184 MVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDVKAKVGKEKRVFESKDVPAEIADAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q  ++++ ++++F+  +   N  ++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQETEVREDVLAHFADIYPD-NLADVNKAFDAMTKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D 
Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY LR+
Sbjct: 363 IGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I PD+IR+VIG GGKVIR I+++TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIDETGAKIDIEDDGTVFIASVDQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G+I LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRINLSRK 685


>gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 706

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 310/687 (45%), Positives = 451/687 (65%), Gaps = 21/687 (3%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ LETG  A+Q++G++ A +GETVVL T V  + + +  DFFPLTVNY E+ Y+VGKIP
Sbjct: 18  PIILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLTVNYIEKFYSVGKIP 77

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+L+RES+P++ E LI+R+IDR +RP+F   ++NE Q++  V+  D ++SP V+S+ AA
Sbjct: 78  GGFLKRESKPSDKETLIARLIDRPLRPIFPDGFRNEVQIVATVVSSDQKNSPDVLSINAA 137

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           SAALM+S +PF GPV   +V  +NG+Y++NP  +  DQ  +++ ++GT+DA++MVE    
Sbjct: 138 SAALMISDIPFNGPVGAVRVGKLNGEYIINPDAELFDQLVMNIVLAGTEDAIVMVEAGLK 197

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253
            +SE+ V++A   GH   + +I    K+ +         + KDFS +  ++ + +  + +
Sbjct: 198 NVSEEEVVEAFEKGHQAIREIIAVQKKMREELGLPKA--EYKDFS-VPADILEKVYAECK 254

Query: 254 VSCF-------IPEKY-----VRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            S F         EKY     V+ +  + LK ++   F    S ++E      + +++ K
Sbjct: 255 QSLFDAVMTKGKKEKYDAIERVKDEYFEKLKTELGEAFDQVESLYSEA-----YHEVEKK 309

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           + R + L+ K+R+DGR  + +R I  +VGLL R HGS+LF RG+TQA+V  TLGT+ D Q
Sbjct: 310 IFREITLENKIRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQ 369

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            VD + G     FM+HYNF P + GEV RMGAP RRE+GHG LA RA+  V+P  + FPY
Sbjct: 370 LVDDIEGNSSKRFMLHYNFPPFSVGEVGRMGAPGRREVGHGALAERALSFVIPDESDFPY 429

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSMATVCG  L+LMDAGVP+   VAGIAMGL+ +   + ILSDI G
Sbjct: 430 TIRVVSEILESNGSSSMATVCGGCLSLMDAGVPVKDMVAGIAMGLIYEKGRYAILSDIMG 489

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI G+S +++  AL  A+ GRLHIL++M +VL+ 
Sbjct: 490 IEDHLGDMDFKVAGTKDGITALQMDIKIEGLSMDLVREALAAARVGRLHILSKMQEVLAS 549

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L  + PR   + + P+++  +IG  GK I+ I+E+TG  ++I D G V I +SS  
Sbjct: 550 PRPDLSPYAPRFVTINVDPEKVGLIIGPAGKNIKAIIEETGVSIDILDGGVVNIFASSKD 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            I++A  MI +I     ++K+YKG+V K+MD+GAFV      + L+H+SQ S E+V   S
Sbjct: 610 SIDSAISMIEAILGELTIDKVYKGKVKKLMDYGAFVEIAPGIEALLHVSQYSFEKVDDLS 669

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             +K GD V VK L  D+RG+ K+S K
Sbjct: 670 KYLKIGDVVEVKYLGKDERGRHKISRK 696


>gi|34763065|ref|ZP_00144038.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887264|gb|EAA24362.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 699

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 305/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +++E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMKLELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIV----- 292
            ++  +     E L+ +     K  R   +D L+++++  F  E +    E E+      
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 300

Query: 293 ---SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
              + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG+ V+I D
Sbjct: 541 QILELMNNTISKPA-ELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I       E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++  +  GKI LS K V
Sbjct: 660 SEISPERVDKVEDVLSVGDVFKVRVISMEG-GKISLSKKKV 699


>gi|313901029|ref|ZP_07834517.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
 gi|312953987|gb|EFR35667.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
          Length = 736

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 304/694 (43%), Positives = 448/694 (64%), Gaps = 13/694 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +++ GR L +ETG +A+Q+ GAVL  Y +TVVL+T    +  K+G DFFPLTV ++E+ Y
Sbjct: 19  LDFCGRGLTVETGEVAKQAGGAVLVRYDDTVVLSTATASKQAKEGIDFFPLTVLFEEKLY 78

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D + +P +
Sbjct: 79  SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCTPEM 138

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  AS AL +S +PF GP+ G  V  ++G+Y++NP  ++ ++  ++L V+GT+ AV M
Sbjct: 139 TAMFGASLALCVSDIPFNGPIAGVMVGRVDGEYIINPTPEQLEKSDINLTVAGTKYAVNM 198

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE  A ++SE+ +L AI+FGH   K ++    ++A    KE + +      + ++ E+  
Sbjct: 199 VESGAKEVSEEAMLGAIMFGHEHIKQLVAFQEEIAAAVGKEKMEVKLYTVDEDIDREVRA 258

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-------EIVSVFEDIQ 299
             ++ +R +  I +K  R  +ID+L ++ V+ F ++    NE        ++  +   I+
Sbjct: 259 QFEQAIRDAVSIEKKLERYGKIDELTEEAVAVFDAKEYE-NEAAKAKVLKQVKQICHSIE 317

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           A  VR ++++ KVR DGR  + +R + +QV +L R HGS+LF RG+TQ + V TLG   D
Sbjct: 318 ADEVRRLIIEDKVRPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGPMND 377

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+  +   FM HYNF P + GE  RMG+P RREIGHG L  RA+  VLP    F
Sbjct: 378 NQIIDDLTEVETKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALSQVLPSVEDF 437

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILS 477
           PYT+R V+E+TES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D ++  + +L+
Sbjct: 438 PYTIRTVAEVTESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEENGKYTVLT 497

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+K+ GI+  +   AL QAK  R  IL  M  
Sbjct: 498 DIQGMEDHFGDMDFKVAGTSKGITALQMDIKVTGITREVFEEALAQAKVARAQILENMMA 557

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIA 596
            +SE R  +G + P++E   I P++IR VIG  GK+I  I+E +   K++I+DDG V I 
Sbjct: 558 AISEPREDVGTYAPKIEQFYIDPEKIREVIGPNGKMINKIIEASDDVKIDIEDDGHVVIY 617

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
               A I  A +MIR I    +V  IY+G+VV++  FGAFV+     DGL+HIS+++ ER
Sbjct: 618 HMDRAAINHAADMIRDIVREAKVGDIYEGKVVRIEKFGAFVNLFPGTDGLLHISKINHER 677

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K  DV+  GDTV VK+ + DDRG++ +S K +
Sbjct: 678 VNKVEDVLNIGDTVRVKVTEIDDRGRVNVSAKAL 711


>gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 728

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 324/714 (45%), Positives = 465/714 (65%), Gaps = 34/714 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVG 71
           G+ + +ETG++A+Q+DGAV+   G+T+V+ATVV  + +    QD+FPL V Y+E+  A G
Sbjct: 12  GKIISIETGKMAKQADGAVVVRQGDTMVIATVVSSKKTPPPNQDYFPLQVEYREKYSAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RESRP+E EIL +R+IDR++RPLF   Y  ETQ+I+ V+  D  +   V+  
Sbjct: 72  KFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLYETQIIVTVISSDQINDADVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           +AAS A+M+S +PF+ P+   +V  ING +V+NP ++E   S LD+ + GT++ + M+E 
Sbjct: 132 LAASCAIMVSDIPFQNPMSEVRVGRINGLFVVNPDINELVNSDLDICIGGTENTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMS 245
           E  ++SE  +LDAI FGH   + +    S++A   AK      P VI ++    L E + 
Sbjct: 192 EMKEISEAEMLDAIKFGHAAIRKLCALQSEIAAEVAKPIRPFTPTVIPAE----LTETVR 247

Query: 246 QMIKEDLRVSCFIP-EKYVRCKQI----DDLKKKMVSYF----SSEHSSWNEGEIVSVFE 296
            + +  L+   + P +K  R  Q      ++ +  + +F    SSE  S +  + + +  
Sbjct: 248 VLCETRLKELAYTPLKKEERADQTAAIYHEIIESTIEHFKATCSSEEFSTDPAKALCINP 307

Query: 297 DI--------QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            I        + +V+R ++LD   R+DGR  + VR IS ++G++ R HGS+LF RG+TQA
Sbjct: 308 HIIDEQIHMVEKRVMRHMILDDAKRLDGRALDQVRPISIELGIIPRAHGSALFTRGETQA 367

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +V +TLGT++D Q VD+L+ +    F +HYNF P   GE  R+G+  RREIGHG LA R+
Sbjct: 368 LVTITLGTKKDAQSVDNLTSSADKKFYLHYNFPPFCVGETGRLGSIGRREIGHGNLAERS 427

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           I  V P   +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K
Sbjct: 428 IKMVAPTEEEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIKKPVSGIAMGLIK 487

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G  + +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+QA+RGR
Sbjct: 488 EGASYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALEQARRGR 547

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL EM K +  +R +L  F P++  + +P D I  +IG GG+ IR I E+TGA++NID
Sbjct: 548 LHILGEMEKAIPSTRQELANFAPKLTSIKVPVDCIGMIIGKGGETIRSITEETGAEINID 607

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLV 647
           DDGT+ IA S+     AA   I+++T  PEV  IY G+V  + D  GAFV F    DGLV
Sbjct: 608 DDGTITIACSTSEGTNAALATIKNLTAKPEVGNIYIGKVRDIRDELGAFVEFLPKTDGLV 667

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQNTGK 696
           HIS++S+ERV K SD +K G+ V VKL+D   D R GK +  LS+K  +Q+  K
Sbjct: 668 HISEISSERVTKVSDHLKIGEKVRVKLVDVRKDSRTGKTRFALSIKAAEQDAPK 721


>gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 689

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 302/683 (44%), Positives = 453/683 (66%), Gaps = 4/683 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+ 
Sbjct: 5   QMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEKM 63

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA+G++PGG+++RE+RP E+ IL SR+IDR IRPLF K  +NE  V+  VM  D +  P 
Sbjct: 64  YAIGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPA 123

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186
           +  M+ ASAAL +S +P+ GP+ G ++  +NG++V+NP +   ++  L++ V+GT+DA+L
Sbjct: 124 ICGMIGASAALSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDLNIVVAGTKDAIL 183

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A ++ E+ +L+ I+  H E K ++     +     KE  V +SKD  +++ + + 
Sbjct: 184 MVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDVKAKVGKEKRVFESKDVPAEIADAVR 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               + L  +    +K  R  Q  ++++ ++++F+  +   N  ++   F+ +  ++VR 
Sbjct: 244 AYGHDKLDAAVRCADKQQRDAQETEVREDVLAHFAEIYPD-NLADVNKAFDAMTKEIVRH 302

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D 
Sbjct: 303 MITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDG 362

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY LR+
Sbjct: 363 IGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALRL 422

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED 
Sbjct: 423 VSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDA 482

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R Q
Sbjct: 483 LGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQQ 542

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ PR+  M I PD+IR+VIG GGKVIR I+++TGAK++I+DDGTV IAS        
Sbjct: 543 MSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIDETGAKIDIEDDGTVFIASVDQEGAAK 602

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV 
Sbjct: 603 AQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVVN 662

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + VK+++ D +G++ LS K
Sbjct: 663 VGDEIMVKVIEIDKQGRVNLSRK 685


>gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 738

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 300/697 (43%), Positives = 444/697 (63%), Gaps = 11/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  +E+ GR L +ETG +A+Q+ G+ L  Y +TVVL+T    +  K+G DFFPLTV+++
Sbjct: 7   QTFRLEFCGRVLTVETGEVAKQAGGSALVRYNDTVVLSTATASKQAKEGIDFFPLTVSFE 66

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF++ ++NE QV+  V+  D E 
Sbjct: 67  EKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQEC 126

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           +P + +M  AS AL +S +PF GP+ G  V  ++G+YV+NP  ++ ++  + L V+GT+ 
Sbjct: 127 TPEMTAMFGASLALCVSDIPFNGPIAGVIVGRVDGEYVINPTPEQLEKSDIHLTVAGTKY 186

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AV MVE  A ++ ED +L AI+FGH   K ++    ++A    KE + +      + +++
Sbjct: 187 AVNMVEAGAKEVDEDAMLGAIMFGHEHIKKLVAFQEEIAAAIGKEKMEVTLYTVDEAIDQ 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           E+ +  + D+R +  I +K  R  +ID+L +  ++ F  +  +          ++  +  
Sbjct: 247 EVRENFEADIRAAVSIEKKLERYGKIDELTEAALARFEEKEYASESAKAKALKQVKEICH 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I+A  VR ++++ KVR DGR  + +R + +QV +L R HGS+LF RG+TQ + V TLG 
Sbjct: 307 GIEANEVRRLIIEDKVRPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLGP 366

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D ++  +   FM HYNF P + GE  RMG P RREIGHG L  RA+  VLP  
Sbjct: 367 MNDNQIIDDVTDVEYKRFMHHYNFPPYSVGETGRMGNPGRREIGHGALGERALSQVLPSE 426

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FI 474
            +FPYT+R V+E+ ES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D D   + 
Sbjct: 427 EEFPYTIRTVAEVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEDSGKYT 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+K+ GI+E++   AL QAK  R  IL  
Sbjct: 487 VLTDIQGMEDHFGDMDFKVAGTSEGITALQMDIKVAGITEDVFREALSQAKGARAQILEN 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTV 593
           M   + + R  +G + P++E   I P++IR VIG  GK+I  I+E     K++I+DDG V
Sbjct: 547 MMTAIDKPREDVGTYAPKIEQFYIDPEKIREVIGPNGKMINKIIEACDEVKIDIEDDGHV 606

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I   +   I  A  MIR I  V +V  IY+G+VV++  FGAFV+     DGL+HIS++ 
Sbjct: 607 VIYHMNREAITKAANMIRDIVRVAKVGDIYEGKVVRIEKFGAFVNLFPGTDGLLHISKIC 666

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  D +  GDT+ VK+++ DDRG++ +S K +
Sbjct: 667 HERVEKVEDKLNIGDTIKVKVMEIDDRGRVNVSAKAL 703


>gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
 gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
          Length = 735

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 307/696 (44%), Positives = 449/696 (64%), Gaps = 17/696 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +++ GR + +ETG IA+Q+ G+VL  YG+TVVL+     +  K+G DFFPLTV+++E+ Y
Sbjct: 19  LDFCGRGITVETGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLTVSFEEKLY 78

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D + S  +
Sbjct: 79  SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCSTEM 138

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M  AS AL +S +PF GP+ G  V  ING+YV+NP   + ++  + L V+GT+ AV M
Sbjct: 139 AAMFGASLALCVSDIPFNGPIAGVIVGRINGEYVINPTPAQMEESDIHLTVAGTKYAVNM 198

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE  A +++E+ +L AI+FGH   K ++    ++A    KE + +       ++E +   
Sbjct: 199 VEAGAKEVNEEAMLGAIMFGHEHIKQLVAFQEEIAAAVGKEKMEVK---LYTVDEAIDTE 255

Query: 248 IKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEG-----EIVSVFED 297
           +++D    +R +  I +K  R  +ID+L +  V+ F + E++S  +      ++  +   
Sbjct: 256 VRKDYEKAIREAVSIEKKLERYGKIDELTETAVAQFEAKEYASEADKNKAIKQVKEICHG 315

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+A  VR ++++ KVR DGR  + +R + +QV LL R HGS++F RG+TQ + V TLG  
Sbjct: 316 IEADEVRRLIIEDKVRPDGRKIDEIRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGAM 375

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D ++  +   FM HYNF P + GE  RMG+P RREIGHG L  RA+  VLP   
Sbjct: 376 NDNQIIDDVTEVESKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALAQVLPSVE 435

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPYT+R V+E+ ES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D    ++ +
Sbjct: 436 EFPYTIRTVAEVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDESSSNYTV 495

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT  GITA+QMD+K+ GI+E+I   AL QAK  R  IL  M
Sbjct: 496 LTDIQGMEDHFGDMDFKVAGTSEGITALQMDIKVTGITEDIFREALAQAKVARGQILENM 555

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVK 594
              +SE R  +G++ P++E   I P++IR VIG  GK+I  I+E+    K++I+DDG V 
Sbjct: 556 LAAISEPRADVGKYAPKLEQFYIDPEKIREVIGPNGKMINKIIEECDDVKIDIEDDGHVI 615

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I       I  A +MIR I  V EV  IY   VV++  FGAFV+     DGL+HIS++S 
Sbjct: 616 IYHMDRTAINKAADMIRGIVKVAEVGDIYDATVVRIEKFGAFVNLFPGTDGLLHISKISH 675

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ERV K  DV+K GDT+ VK+++ DDRG++ +S K +
Sbjct: 676 ERVEKVEDVLKIGDTIKVKVMEIDDRGRVNVSAKAL 711


>gi|219849396|ref|YP_002463829.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aggregans
           DSM 9485]
 gi|257096672|sp|B8G3Z1|PNP_CHLAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219543655|gb|ACL25393.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aggregans
           DSM 9485]
          Length = 755

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 327/699 (46%), Positives = 460/699 (65%), Gaps = 16/699 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           ++TV  E AGR L LE GR A Q+DGAV+A YG+T++LATVV  +  ++G DFFPLTV+Y
Sbjct: 6   IYTVSAEIAGRTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIP  + +RE RPT   ILISR+ DR +RPLF K + NE QVII     D+E
Sbjct: 66  EEKMYAVGKIPANFFKREGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDME 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P  ++++AASAAL +S +PF GPV   Q+ +++G+ V+NP++ E ++  LDL V+GT+
Sbjct: 126 NDPGPLAIIAASAALAISDIPFAGPVGAVQMGHLDGKLVVNPKMGEIEKSRLDLVVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237
           DAVLMVE  A +LSED +L A+I GH  CK + E   +L ++C K      P V+D+   
Sbjct: 186 DAVLMVEAGAYELSEDEMLQAVIEGHAVCKQICELQEQLVQLCGKPKRPFTPPVVDTS-- 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVS 293
             LEE +S  + + LR +   P K  R  Q + LK +++++F++    E       E+  
Sbjct: 244 --LEEAISAWMGDRLRKAVRSPVKQEREAQTEALKAEVIAHFTADEPEEEIPNRTKEVSK 301

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            FE +    VR  +LD+ +R+DGR  + +R IS +VG++ R HGS+LF RG TQ + + T
Sbjct: 302 AFEKLLKDEVRNAILDEGIRVDGRALDEIRPISIEVGVVPRVHGSALFTRGQTQVLTIAT 361

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  DEQ VD L       ++ HYNF P +TGE+ R+G P RR+IGHG LA R+++ VL
Sbjct: 362 LGSPGDEQKVDDLGIETTKRYIHHYNFPPFSTGEIRRLGTPRRRDIGHGALAERSLYAVL 421

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
           P   +FPYT+R+VSE+  S+GSSSMA+VCGSSL+LMDAGVPI  PVAG+AMGL+   D  
Sbjct: 422 PSEEEFPYTIRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLITGEDGR 481

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G ED LG MDFKVAGT +G+T +QMD+K  GI+  IM  A  QA+ GRL IL
Sbjct: 482 WRVLTDIQGIEDALGDMDFKVAGTANGVTGLQMDIKTTGITYEIMRQAFAQARAGRLFIL 541

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M+ V+S  R +L  + PR+  + IP D+I  +IG GGK IR I + TGA+++I+DDG 
Sbjct: 542 EKMNAVISAPRPELSIYAPRIMTIQIPVDKIGALIGPGGKTIRNICDTTGAQIDIEDDGR 601

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I +      + A  MI  +T   +V  I+ G+VV +  FGAFV+    +DG+VH+S+L
Sbjct: 602 VFITAPDGEAAKKAISMIEGLTREAKVGDIFLGKVVSIKPFGAFVNILPGKDGMVHVSEL 661

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
             +RV    DVV  GD + V ++D D + GKI LS + V
Sbjct: 662 DEKRVENVEDVVSLGDEINVMVIDIDRNTGKISLSRRAV 700


>gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides DSM 266]
 gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 732

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 324/716 (45%), Positives = 458/716 (63%), Gaps = 38/716 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQERTYAVG 71
           G+ L +ETG++A+Q+DGA L   G+T+VLATVV  ++     QD+FPL V Y+E+  A G
Sbjct: 12  GKILSIETGKMAKQADGAALVRLGDTMVLATVVSSKTPPPANQDYFPLQVEYREKYSAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+I+ V   D  +   V+  
Sbjct: 72  KFPGGFFKREGRPSEKEILTARLIDRALRPLFPDGYLFETQIIVTVFSSDQINDADVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           VAASAA+M+S +PF   +   +V  ING++++NP ++E QGS +D+ + GT + + M+E 
Sbjct: 132 VAASAAIMVSDIPFHNSMSEVRVGRINGEFIVNPNINELQGSDIDICIGGTANTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKLEEEMSQMIK 249
           E  ++SE  +LDAI FGH   + +     ++A   A+ +      K  +KL+E ++ + +
Sbjct: 192 EMKEISEAEMLDAIKFGHEAIRKICALQDEMAAEIARPQRSFAPVKAPAKLKEVIAGLSE 251

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--------GEIVS-------- 293
             L+   + P     CK+  D  +K  S +     S  E         EI +        
Sbjct: 252 TRLKELAYTP----LCKE--DRAEKTASVYKETLQSTLELFKALLTPEEIAAEPEKALCL 305

Query: 294 ----VFEDIQA---KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
               + E+I A   KV+R ++LD   R+DGR  + +R IS ++G++ R HGS+LF RG+T
Sbjct: 306 NAHIIEEEIHAVEKKVMRHMILDDGKRLDGRTLDEIRPISIELGIIPRAHGSALFTRGET 365

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           QA+V +TLGT++D Q VD+L+ +    FM+HYNF P + GE  R+G   RREIGHG LA 
Sbjct: 366 QALVTITLGTKKDAQSVDTLTDSADKRFMLHYNFPPFSVGETGRVGGTGRREIGHGNLAE 425

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R+I  V P    FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL
Sbjct: 426 RSIKMVSPSETDFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGL 485

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+GD + +LSDI G+EDHLG MDFKVAGT+ GITA QMD+KI G+  +I+  AL+QA++
Sbjct: 486 IKEGDAYSVLSDILGNEDHLGDMDFKVAGTEDGITACQMDIKIDGLDYHILETALEQARK 545

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GRLHIL++M   +  SR +L ++ PR+  + IP D I  +IG GG+ IR I E+TGA++N
Sbjct: 546 GRLHILDKMEVAIPISRGELAQYAPRLTSIQIPVDAIGLIIGKGGETIRSITEETGAEIN 605

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDG 645
           I+DDGTV IA SS     AA E I+++   PE+   Y G+V  + D  GAFV F    DG
Sbjct: 606 IEDDGTVTIACSSPEGTNAAVETIKTLISKPEIGNTYLGKVRDIRDELGAFVEFLPKTDG 665

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-----DDRGKIKLSMKVVDQNTGK 696
           LVHIS++S ERV K SD +K GD V VKL+D        + +  LS+K V+    K
Sbjct: 666 LVHISEISKERVTKVSDHLKVGDRVKVKLVDIRKDPRTGKNRFALSIKAVESEPEK 721


>gi|229822930|ref|ZP_04449000.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
 gi|229787743|gb|EEP23857.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
          Length = 700

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 301/697 (43%), Positives = 448/697 (64%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M + H      AGRPL +E G +A+Q++GAVL  YG+TVVL+  V  +    G DFFPLT
Sbjct: 1   MSNKHVFSTTLAGRPLSVEIGELAKQANGAVLVRYGDTVVLSAAVASKKAGTG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YAVGK+PGG+++RE RP+E   L SR+IDR +RP+F +  +NE Q+   V+  
Sbjct: 60  VHYIEKMYAVGKVPGGFIKREGRPSEAATLTSRLIDRPLRPMFPEGVRNEIQITNTVLSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + +P + +M+ AS AL +S +PF+GPV G  V  +NG+ V+NP + + + S ++L V+
Sbjct: 120 DQDCTPEMAAMLGASLALAVSDIPFDGPVAGVNVGRVNGEIVINPTVAQAELSDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  A+ MVE  A ++SE  +L+A++ GH   K ++   +++     KE       + + 
Sbjct: 180 GTATAINMVESSAKEVSEADMLEALLKGHAAIKELVAFQNEIVAQIGKEKFEFTLAEVAP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
           ++  ++ +  K  +  +    EK  R   +D + ++   +F++ ++  ++      ++ +
Sbjct: 240 EVAAQVGERYKSRMIQAIQTQEKKAREAAVDAVMEEATEFFAAVYADRDDYDQLMKDVST 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
              D++   VR ++  ++VR DGR  + +R +S+ V LL R HGS LF RG TQ +   T
Sbjct: 300 ALHDLEKDEVRRLITKERVRPDGRRIDEIRPLSSSVALLPRVHGSGLFTRGQTQVLTAAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + GE  R+G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQVIDGLGIEEGKRFIHHYNFPNFSVGETGRVGSPGRREIGHGALGERALKQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV +G+D+
Sbjct: 420 PAPEDFPYTIRLVSEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVMEGEDY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E I+  AL QAK+ RL IL+
Sbjct: 480 TVLTDIQGLEDHLGDMDFKVAGTAAGITALQMDIKIQGITEAILTEALTQAKKARLEILD 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E+   L E+R +L  + P+++I+ I PD+I+ VIG GG+ I GI++ TG K++ID  G V
Sbjct: 540 ELVSTLPEARKELSPYAPKIDIIQINPDKIKVVIGRGGETINGIIDATGVKIDIDQTGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I  AR+MI  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L 
Sbjct: 600 SIASSDQDMINKARQMIEDLVREVEVGQVYTGKVKRIEKFGAFVEVLPGKDGLVHISELE 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             RVA+  DV+K GD V VK+++ D++G+I LS KV+
Sbjct: 660 HRRVAQVEDVLKIGDVVEVKVIEIDNQGRINLSRKVL 696


>gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 731

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 321/708 (45%), Positives = 461/708 (65%), Gaps = 29/708 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVG 71
           G+ L +ETG++A+Q+DGA +   G+T+VLATVV  + +    QD+FPL V Y+E+  A G
Sbjct: 12  GKILSIETGKMAKQADGATVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAG 71

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RE+RP+E E+L +R+IDR++RPLF   Y  ETQ+II V+  D  +   V+  
Sbjct: 72  KFPGGFFKRETRPSEKEVLSARLIDRALRPLFPDGYLYETQIIITVISSDQINDGDVLGG 131

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           +AASAA+M+S +PF   +   +V  ING++++NP ++E  +  LD+ + GT+D + M+E 
Sbjct: 132 IAASAAIMVSDIPFRNAMSEVRVGRINGKFIINPDVNELAESDLDICIGGTKDTICMLEG 191

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKLEEEMSQMI 248
           E  ++SE  +LDAI FGH+  K +     ++A    K   P V   +  ++L E +    
Sbjct: 192 EMQEISEAEMLDAIKFGHDAIKRLCTLQDEIAAAVGKPDRPFV-PVQVPAELTEAVRSTC 250

Query: 249 KEDLRVSCFIPEK---------YVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEI 291
           +  L+   + P +         ++  + I  + +K  S  SSE  +         NE  I
Sbjct: 251 ETRLKELAYTPLRKEDRADQTAHIYRETIQAIVEKFKSSISSEDIAADPAKALCLNEHII 310

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                 ++ KV+R ++LD   R+DGR  E VR IS ++G++ R HGS+LF RG+TQA+V 
Sbjct: 311 EEEIHSVEKKVMRHMILDDSKRLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVT 370

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT++D Q VD+L+ +    FM+HYNF P + GE  R+G+  RREIGHG LA RAI  
Sbjct: 371 ITLGTKKDAQSVDNLTNSADKKFMLHYNFPPFSVGETGRIGSTGRREIGHGNLAERAIKM 430

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V P   +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GIAMGL+K+G 
Sbjct: 431 VAPTEQEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGS 490

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +LSDI G+EDHLG MDFKV GT  GITA QMD+KI G+  +++  AL+QA++GRLHI
Sbjct: 491 AYAVLSDILGNEDHLGDMDFKVTGTRDGITACQMDIKIDGLDYHVLETALEQARKGRLHI 550

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M + + ESR +L +F PR+  + +P + I  +IG GG+ IR I E+TGA++NIDDDG
Sbjct: 551 LDKMDEAIPESREELAQFAPRLTTIKVPVESIGMIIGKGGETIRSITEETGAQINIDDDG 610

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCGARDGLVHIS 650
           TV IA +S+    AA   I+++   PEV  +Y G+V  + D  GAFV F    DGLVHIS
Sbjct: 611 TVTIACTSVEGTNAALATIKTLLAKPEVGTVYLGKVRDIRDELGAFVEFLPKTDGLVHIS 670

Query: 651 QL-STERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQ 692
           ++ STERV K SD +  GD + VKL+D   D R GK +  LS+K V+ 
Sbjct: 671 EISSTERVNKVSDHLNIGDKIKVKLVDVRKDPRTGKTRFALSIKAVEN 718


>gi|307244366|ref|ZP_07526479.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492267|gb|EFM64307.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 696

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 300/694 (43%), Positives = 445/694 (64%), Gaps = 4/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    + E AGR L +E G+IA  ++G  + +YG+T+++  V      +DG DFFPL+
Sbjct: 1   MFEHRIFKTEIAGRTLTVEIGKIAEMTNGNCIISYGDTMLMVNVTKSAQPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ Y+VGKIPGG+L+RE R +E   L SR+IDR IRPLF + ++N+ QV+  V+  
Sbjct: 61  VDFEEKLYSVGKIPGGFLKREGRASEKATLTSRLIDRPIRPLFPEGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ +S AL +S +PF GP     V  I+G++VLNP   + + S L L VS
Sbjct: 121 EQDCTPDIVAMLGSSIALSISDIPFNGPTASVLVGLIDGEFVLNPNQQQREDSDLHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++A++MVE  AN++ ++VVLD I++ H E K ++E I  +      E   ++    S+
Sbjct: 181 GTKEAIMMVEAGANEVDDNVVLDGILYAHEEIKKIVEFIEGIVAEVGHEKCPVELHVPSQ 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFE 296
            +E  +++  +E +R +    EK  R +++D + ++ ++YF  +  ++ E  G+I  V  
Sbjct: 241 EVEAAVNEFAREKMREAVKTVEKMERTEKMDAVSEETMAYFEEKWDNFEEVAGDIEDVLH 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI    VR+++ D  VR D R  + +R I  +VG++ RTHGS++F RG TQ + V TLG 
Sbjct: 301 DIIKDEVRSLIADHSVRPDNRSLDEIRPIWCEVGMIPRTHGSAIFTRGQTQVLNVTTLGA 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P  
Sbjct: 361 LGDVQRLDGLDEEENKRYMHHYNFPAYSVGETRPSRGPGRREIGHGALAERALLPVIPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+VSE+  S+GS+S A+VC S+L+L+DAGVPI   VAGIAMGL+K      +L
Sbjct: 421 EDFPYAIRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHGKVAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI E ++  AL+QA+ GRLHIL EM 
Sbjct: 481 SDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKIAGIDEPVLRQALKQAREGRLHILGEMK 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           KV++E R +L ++ P++  M I PD+IR+VIG GGK+I  I+++TG K++I+  G V I 
Sbjct: 541 KVITEPRPELSQYAPKIVKMLIDPDKIRDVIGPGGKMINKIIDETGVKMDIEQTGEVFIV 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 I  A EM+  I    E  KIYKG V ++  FGAFV     + GL+HISQ+S ER
Sbjct: 601 GVDPEMINRALEMVEEIVAEAEPGKIYKGTVTRIEKFGAFVEILPGKQGLLHISQISKER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +A   DV+  GD + V + + DD+ +I LS+K +
Sbjct: 661 IANVEDVLAIGDQIDVLVTEIDDKDRINLSIKAI 694


>gi|320333541|ref|YP_004170252.1| polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
           DSM 21211]
 gi|319754830|gb|ADV66587.1| Polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
           DSM 21211]
          Length = 718

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 316/687 (45%), Positives = 438/687 (63%), Gaps = 9/687 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T      GR L LETG++A+   GAV   YG+ V+L T    R      DF PLTV ++E
Sbjct: 5   TYSATLGGRELTLETGKLAKLVSGAVTVRYGDAVLLVTA-QAREDVSPLDFLPLTVEFEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVG+IPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D +  
Sbjct: 64  RHYAVGRIPGSFHRREGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADAQVG 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             V+  + ASAAL LS +P+ GP    +V ++ G+YV+NP  D+ D  SLDL V+GT+DA
Sbjct: 124 ADVLGPIGASAALSLSDVPWAGPTACVRVGFVGGEYVVNPTYDQLDASSLDLVVAGTRDA 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEE 242
           +LMVE  A  + E++++ AI F H E +P+I+ I ++ +   +E    V D+     L  
Sbjct: 184 ILMVEAGAQVVEEELLVGAIEFAHREMQPIIDLIEQMQREVGREKFNYVADADLAVDLVP 243

Query: 243 EMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFEDI 298
           E+++  +   LR +   P+K  R   +  L+ +++       +E +    G   + F  +
Sbjct: 244 ELTEAARSGGLRDALLTPKKKDRSVALKALRDRLIGERVPEGTEDADARTGAFKTAFGRV 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + +R ++L++ VR DGR+S TVR I  +   L R HGS++F RG+TQ +   TLGT  
Sbjct: 304 EKQELRRLILEEDVRADGRNSRTVRPIWIETHALPRPHGSAIFTRGETQVLGTTTLGTER 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE  +D L+  + + FM+HYNF P +TGEV RM   SRRE+GHG LA+RAI  VLP   +
Sbjct: 364 DEILIDDLTDDKNDRFMLHYNFPPYSTGEVKRMSGQSRREVGHGNLAKRAIRAVLPSFEE 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +RIV ++ ES+GSSSMATVC  +L+LMDAGVPI  PVAG+AMGLV +GD + +L+D
Sbjct: 424 FPYVIRIVGDVLESNGSSSMATVCAGTLSLMDAGVPIKAPVAGVAMGLVMEGDRYRVLTD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKV GT  G+TA+QMD+KI GI+  IM  AL QAK  RLHIL +M++V
Sbjct: 484 ILGLEDALGDMDFKVCGTAEGVTALQMDIKIQGITPAIMREALAQAKEARLHILGKMAEV 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L   R +L    PR+  + I P++I +VIG GGK IR + E  GA+V I++DGTV+I S+
Sbjct: 544 LPAPRAELSPTAPRIITVKINPEKIGSVIGPGGKQIREL-EAMGAQVTIEEDGTVRIFSA 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A  +A RE I +IT   +V + + G VVK   FGAF++    +DG++HISQ+S ERV 
Sbjct: 603 DGAAAQAVRERIEAITREAKVGEEFDGTVVKTAAFGAFINLFPGKDGMLHISQMSEERVN 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              DV+  GD V VK+ + DDRGKI L
Sbjct: 663 AVEDVMNVGDKVRVKIANVDDRGKIDL 689


>gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1]
 gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1]
          Length = 895

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 305/682 (44%), Positives = 448/682 (65%), Gaps = 10/682 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E+ G+ L +E G +A+Q++G+VL  Y +TV+L+T V  +  KD  DFFPLTV Y+E+ Y
Sbjct: 8   LEFYGKTLTVEAGELAKQANGSVLVRYDDTVILSTAVAGKEPKD-VDFFPLTVTYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D  +SP +
Sbjct: 67  SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQNASPEM 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLM 187
            +M  AS AL LS +PF GP+ G  V  I+G++ +N   ++ + SL +L V+GT++A+ M
Sbjct: 127 AAMFGASLALCLSDIPFNGPIAGVNVGLIDGEFTINAGPEDMERSLINLEVAGTKEAINM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE +A ++ E+ +L+A++FGH++ K +I    K+ + C KE I I   +  S + EE+  
Sbjct: 187 VEADAKEVDEETMLNALMFGHDKIKELIAFQEKVVEACGKEKIEIPLFELDSAIVEEVES 246

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNE-----GEIVSVFEDIQA 300
           + KE +  +  IP K  R   IDD+  ++V+ F + +++   E      ++  V  D++ 
Sbjct: 247 LAKERMIKAVSIPGKLERYGAIDDINAEVVTLFENRDYADLKEQAKVLKQVKIVLHDLEK 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + K+R DGR  + VR ++AQ+ LL R HGS+LF RG+TQ + V TLG   + 
Sbjct: 307 DEVRRLITEDKIRPDGRKIDEVRPLNAQIDLLPRVHGSALFTRGETQVLSVCTLGALGEH 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L    +  FM HYNF P + GE  RMGAP RREIGHG L  RA+  V+P   +FP
Sbjct: 367 QKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVIPSEDEFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSS A++C SS+ALM AGVPIS PV+G+AMGLVK GDD+ IL+DI 
Sbjct: 427 YTIRLVSEVLESNGSSSQASICASSMALMTAGVPISNPVSGVAMGLVKKGDDYTILTDIQ 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  GI A+QMD+KI GI++ I+  AL QA  GR  I++ M   ++
Sbjct: 487 GMEDHLGDMDFKVAGTKKGICALQMDIKIEGITKEILQEALAQANVGRQQIMDCMLGAIA 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSS 599
           E + +L  + P+V +M I P+QI++VIG GGK I  I+E++   K++I+ DG V I    
Sbjct: 547 EPKKELSPYAPKVFMMRIEPEQIKDVIGPGGKNINEIIEKSNDVKIDIEQDGRVTIYHFD 606

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I  A ++I +I    EV ++Y G+VV+V D  AFV      +G +H+  ++ ER+ K
Sbjct: 607 QDAIHTAAKLIENIVKKAEVGEVYDGKVVRVEDKFAFVELFEGTNGFLHVGDVAHERINK 666

Query: 660 TSDVVKEGDTVWVKLLDFDDRG 681
            SDV+K GDT  VK++   D+G
Sbjct: 667 VSDVLKVGDTAKVKVIKITDKG 688


>gi|237738330|ref|ZP_04568811.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420210|gb|EEO35257.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 699

 Score =  585 bits (1508), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 312/703 (44%), Positives = 448/703 (63%), Gaps = 17/703 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   V++E AGR L   TG+IARQS GAV+  YG+TV+L+TV   +  +   DFFPLT
Sbjct: 1   MFDERKVQMELAGRTLTFSTGKIARQSCGAVMVQYGDTVLLSTVNRSKEPRKENDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RE +P+ N  L +R+IDR IRP+F   +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKREGKPSTNATLTARLIDRPIRPMFPDGFNYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179
           D +++P  + ++ +S ALMLS LPF GPV G  + Y NG+++LNP   + +   L+L V+
Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVIGYKNGEFILNPTPEELETSELELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT++A+ MVE  AN+L E+ +L AI+F H   K + +     AK   KE +  +  +   
Sbjct: 181 GTREAINMVEAGANELDEETMLKAIMFAHENIKKICDFQEAFAKEVGKEKMEFVKPEVMP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---- 294
            ++  + +   E L+ +     K  R + +D L+++++  F  E+  + EGE V +    
Sbjct: 241 LVKNFIDERGMERLQAAVLTLGKKNREEAVDSLEEELLETFKVEN--YGEGEEVEIPEDV 298

Query: 295 -------FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
                  + D+  K+VR  +L  K R+DGR +  +R + A+V  L   HGS++F RG+TQ
Sbjct: 299 LIEFKGYYHDLMKKLVRDAILYHKHRVDGRKTTEIRPLFAEVNCLPIPHGSAMFTRGETQ 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           A+V+ TLGT+EDEQ VD L       F +HYNF P + GE  RMG+P RRE+GHG LA R
Sbjct: 359 AVVITTLGTKEDEQLVDDLEKEYYKKFYLHYNFPPYSVGETGRMGSPGRRELGHGSLAER 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+
Sbjct: 419 ALKYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLI 478

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+GD+F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA   
Sbjct: 479 KEGDEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALKQALDA 538

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R  IL  M+  +  +   +    PR+  M IP D+I  +IG GGK I+GI++QTGA V+I
Sbjct: 539 RNEILELMNNTIP-APAPIKSNVPRIYQMNIPTDKIAVLIGPGGKNIKGIIDQTGATVDI 597

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG V I     A +    +++ S     EV ++Y G+VV +  FGAF+     ++GL+
Sbjct: 598 NDDGKVSIFCKDEAALNETVKLVNSFVKDVEVGEVYSGKVVSIQKFGAFMEILPGKEGLL 657

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           H+S++S ERV K  DV+K GD   VK++  D+ GKI LS K V
Sbjct: 658 HVSEISQERVEKVEDVLKVGDVFDVKVISTDN-GKISLSKKRV 699


>gi|294101702|ref|YP_003553560.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
           colombiense DSM 12261]
 gi|293616682|gb|ADE56836.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
           colombiense DSM 12261]
          Length = 748

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/689 (44%), Positives = 451/689 (65%), Gaps = 16/689 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE  G  +  ETG +A+Q++G+++A  G+TVVL T     + + G DFFPL V+++ER Y
Sbjct: 7   IEIGGHEMTFETGCVAKQANGSIVARSGDTVVLTTTCISDTPRTGIDFFPLLVDFEERYY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + GKIPGG+++RE RPTEN IL +R+IDRSIR LF +  + +  V+  V+  D  + P V
Sbjct: 67  SAGKIPGGFIKREGRPTENAILSARVIDRSIRSLFDENLRYDIHVVATVLSVDQLNPPSV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--QGSLDLFVSGTQDAVL 186
           +++ AAS ALM+S +P+ GP+   ++ YIN Q V+NP L+E   +  LDL VSG +D + 
Sbjct: 127 LAINAASVALMISEIPWGGPIGAVRIGYINDQLVVNP-LEEQMLESKLDLLVSGHKDGIT 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----SKLE 241
           MVE  AN++SE++++DA+   H E K ++    ++ K   KE I I   +F     S L 
Sbjct: 186 MVEAGANEVSEELLVDALDLAHTEIKKIVAMQEEIRKQIGKEKIDIPEPEFFEEIDSWLG 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            EM + + E    +  I EK  R ++I  +K   + +F+ E+    E  I +  +++  K
Sbjct: 246 AEMQKHVLE----AVSIHEKKPRAEKIRYVKTTSIEHFA-ENYPGTEAYISAAVDEMVKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-DE 360
            +R+ +L+++ R DGR  + +R I+ +VG+L R HGS+LF RG+TQA+VV TLG    D+
Sbjct: 301 TMRSRILNERERADGRAMDEIRPITCEVGVLPRVHGSALFTRGETQALVVATLGMMGVDD 360

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + N  F++HYNF P + GEV  M  P RREIGHG LA RA+ P++P   +F
Sbjct: 361 QILDGLKQDEPNKRFILHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPIIPDEVEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS+I ES+GSSS A++CG SLALM++GVPI++ VAGIAMGL+K+G+   ILSDI
Sbjct: 421 PYVVRLVSDILESNGSSSQASICGGSLALMNSGVPINRHVAGIAMGLIKEGEKVEILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  G+TA+QMD K GGI+  ++  AL QAK GRL IL +M   +
Sbjct: 481 QGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITREVLKKALNQAKEGRLFILEKMESAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E    L  + PR+ +  I P++IR++IG GGKVIRGI ++TG K+N++D+G V IA +S
Sbjct: 541 EEPS-GLSPYAPRIYVTHIDPEKIRDIIGPGGKVIRGITQETGVKINVEDNGEVYIAGTS 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              +E A  +I+ +T   E  +IY G+V ++M+FGAF+     ++GL+HIS++S  RV K
Sbjct: 600 SEGVERALAIIKGLTKELEPGEIYLGKVTRIMNFGAFIECLPGKEGLLHISEISPHRVGK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             DV   GDTV V + + DD G+  L+ K
Sbjct: 660 VEDVFGVGDTVLVMVKEIDDMGRTNLTRK 688


>gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
           DSM 2489]
 gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
           DSM 2489]
          Length = 696

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/681 (43%), Positives = 446/681 (65%), Gaps = 16/681 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG+I +Q++G V A  G T V+ATV     +K+G DF P+TV Y E+ YA GKIPG
Sbjct: 14  LILETGKIGKQANGCVYAQIGGTAVIATVCASSEVKEGLDFVPVTVEYNEKFYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RP + EIL+SR+IDR +RPLF   +  E Q++   +  D  + P +++++A+S
Sbjct: 74  GFVKREGRPKDKEILVSRLIDRPMRPLFETSFGREIQIVPTCVSIDGVNPPDILAVLASS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AA+ +S +PF GPV G +V Y+NG+Y+LNP  ++ ++  L++ V+GT+D   MVE  AN+
Sbjct: 134 AAVSISDIPFHGPVAGVRVGYLNGEYILNPTYEQMEKIQLEIVVAGTKDGFTMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMSQMIK 249
           +SE+V+L A+         +     +L K+  KE     P+ +  ++   ++ E   +++
Sbjct: 194 VSEEVMLGALEKAQGFITDMCLLQEELVKLAGKEKLPLAPLDVKLENADAIKAEAIPLMQ 253

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRTVML 308
           E    +CF   K  R   +  +K K+   +S +     + ++  ++F+DIQ  ++R+ +L
Sbjct: 254 E----ACFQKGKMARGNAVKAVKAKIAEKYSEQLEDEIQAKLFNALFDDIQYDLLRSSIL 309

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +K +R+DGR +E +R I+ +V +L R HGS+LF RG+TQ++ V TLGT  DEQ  D + G
Sbjct: 310 EKGLRIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLAVTTLGTAMDEQVYDDIEG 369

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +  +F++HYNF P + GEV ++    RREIGHG LARR++ P++P  ++FPYT+R+VSE
Sbjct: 370 DRTENFILHYNFPPYSVGEVGKL-TTGRREIGHGNLARRSLAPMIPSRSEFPYTIRVVSE 428

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFIILSDISGDEDH 485
           I ES+GSSS A+ CG  L+L+ AGVP+ K VAGIAMGL+ DG     + ILSDI G+EDH
Sbjct: 429 IMESNGSSSQASTCGGCLSLLAAGVPMKKMVAGIAMGLITDGPQYKKYAILSDILGEEDH 488

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT  GIT  QMD+KI G+S +IM  AL+QAKRGR HIL+ M K +S+ +  
Sbjct: 489 LGDMDFKVAGTRDGITGFQMDIKIAGVSMDIMRRALEQAKRGRNHILDIMEKCISKPQ-P 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  + P++E M I  D+I  +IG GGK ++ + +Q    +N +DDGTV I   S    +A
Sbjct: 548 ISPYAPKIETMKIAVDKIGALIGPGGKNVKALCQQYNVTINTEDDGTVTIYGKSGVSTDA 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+  I+ I + PE   IY+G V ++MDFGAF+     ++GL HIS+LS  RV K SD++K
Sbjct: 608 AKAAIKGICEDPEPGTIYQGTVKRIMDFGAFIEILPGKEGLCHISKLSRNRVEKVSDILK 667

Query: 666 EGDTVWVKLLDFDDRGKIKLS 686
           EG  + VKLL+ D  G++ LS
Sbjct: 668 EGQVIPVKLLEVDKMGRLNLS 688


>gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 777

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/701 (43%), Positives = 449/701 (64%), Gaps = 19/701 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VH+V +E AGRPL +E GR+A+ ++GAVL  YG+TV+LA V      +DG DFFPLTV+Y
Sbjct: 6   VHSVTVELAGRPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPG + +RE RPTE  IL SR+ DR +RPLF K Y N+ QV I  +  D  
Sbjct: 66  EEKMYAAGKIPGSFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQV 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P  ++++ ASAAL++S +PF  PV   Q+ +I+G + +NP +   + S LDL V+GT 
Sbjct: 126 NDPGPLAIIGASAALVISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVVAGTS 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF----- 237
           +AV+MVE  A +L+E  +L+A+  GH   + VI+A  +LA+ C K       K+F     
Sbjct: 186 EAVMMVEASAYELTEAEMLEAVKRGHEAMQAVIQAQLELAEKCGKP-----KKEFVAPVV 240

Query: 238 -SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIV 292
            + L++E+   +      +    +K  R    D L+  ++  FS+    E  +     + 
Sbjct: 241 DTSLQDEIKAWMGNRFLQALNNSDKAAREAATDSLRTDVLEQFSAGVAEEELAARVKAVT 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             ++ +    VR  +L++ +R+DGR    +R I+  VG+L R HGS LF RG TQ + V 
Sbjct: 301 KNYDALVKDEVRASILEQGIRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVA 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ +D L       +M HYNF   +TGE      P RR+IGHG+LA RA+ PV
Sbjct: 361 TLGSPGDEQRLDDLGIETTRHYMHHYNFPAFSTGEARPSRGPRRRDIGHGKLAERALVPV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDG 470
           LP+  +FPYT+R+VSE+  S+GSSSMA+VCGSSLALMDAGVPI  PVAG+AMGL+  K+ 
Sbjct: 421 LPEKDKFPYTMRLVSEVLASNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKEA 480

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             F +L+DI G ED LG MDFKVAGT +GITA+QMD+K  GI+  IM  A +QA++GR+ 
Sbjct: 481 GQFSVLTDIQGLEDALGDMDFKVAGTTAGITALQMDIKTTGITYEIMQQAFEQARQGRVF 540

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M+++++ +R  + +F PR+  + I P +I  +IG GGK IR I+EQTGA+++++DD
Sbjct: 541 ILDKMNEIINTARNDISQFAPRIITLQIDPSKIGALIGPGGKTIRSIIEQTGAQIDVEDD 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V + +        A+ +I  +T   +V +I+ G+VV++M +GAFV+    +DG+VH+S
Sbjct: 601 GRVFVTTPDADGARMAQSLIEGLTREAKVGEIFTGKVVRIMPYGAFVNVLPGKDGMVHVS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +L  +RV    DVVK GD + V ++D +   GK+ LS + +
Sbjct: 661 ELDEKRVENVEDVVKIGDELTVMVIDVEPGTGKLSLSRRAI 701


>gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 697

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/684 (42%), Positives = 440/684 (64%), Gaps = 4/684 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +EWAGR L +E G++A+Q++GAVL  YG+T VL+T    +  KD   FFPLTVNY+ER Y
Sbjct: 10  MEWAGRTLTIEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVNYEERLY 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE RP+++ +L SR+IDR IRP+F   ++N+ QVI  VM +D ++   +
Sbjct: 69  AAGKIPGGFIKREGRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQDAPAEM 128

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S AL +S +PF GP+ G  +  I+G++++NP   + + S ++L V+G +DA+ M
Sbjct: 129 AAMIGSSLALSVSDIPFSGPIAGVTIGRIDGEFIINPTPQQLETSDIELVVAGNKDAINM 188

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A ++ E+ +L+A+++GH+E K +I     +     KE + +  K   + LE E+  
Sbjct: 189 VEAGAEEVPEETILEALMYGHDEIKRIIAFQEDIVSKVGKEKMEVQLKTVDADLEAEIRD 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
            +   L+ +  + EK+ R   +  +   ++  + +E    +  E   V + +  + VR +
Sbjct: 249 KVGNQLKTAALVEEKHAREDAVKAVMDSILDQYVTEEEDRSV-EAKEVLDKLFKETVRIL 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  +K+R DGR  + +R +++++ +L RTHGS LF RG TQA+ V TLG   D Q +D L
Sbjct: 308 ITKEKIRPDGRKPDEIRALASEIDILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P    FPYT+R+V
Sbjct: 368 GIEETKRFMHHYNFPSFSVGETGPIRGPGRREIGHGALGERALEQVIPSEEDFPYTIRLV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+ ES+GS+S A++C S+LA+M AGVPI  PVAGIAMGLVK  +D  +L+DI G ED L
Sbjct: 428 SEVLESNGSTSQASICASTLAMMAAGVPIKAPVAGIAMGLVKHEEDVTVLTDIQGMEDAL 487

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  G+TA+QMD+KI GI   ++  AL QA+ GR+ IL  M   +S  R +L
Sbjct: 488 GDMDFKVAGTKKGVTAIQMDIKISGIDRAVLEQALSQAREGRIKILESMESAISTPREEL 547

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            E+ P++  M+I PD+IR+VIG  GK+I  I+E TG K++I+ DG V IAS++      A
Sbjct: 548 NEYAPKILTMSINPDKIRDVIGPSGKMINQIIEDTGVKIDIEQDGKVYIASANHEMNLKA 607

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +++I  I    +V + Y G+V ++  FG FV     +DGLVHISQL+ ERV K  DVV  
Sbjct: 608 KQIIEDIVREVQVGETYLGKVKRIEKFGCFVELFKGKDGLVHISQLAKERVNKVEDVVSL 667

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           GD + VK+ + D++G++ LS KV+
Sbjct: 668 GDEILVKVTEIDNQGRVNLSRKVL 691


>gi|310658988|ref|YP_003936709.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii
           DSM 519]
 gi|308825766|emb|CBH21804.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           sticklandii]
          Length = 699

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 307/689 (44%), Positives = 445/689 (64%), Gaps = 11/689 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E    GR L +E G++A  ++GA +   G+TVVL         ++G DFFPL+V+Y+E+ 
Sbjct: 6   ETSIGGRNLSVEIGKVAELANGACILRSGDTVVLVVASNSEKPREGIDFFPLSVDYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+ GKIPGG+++RE RP+E  IL SR+IDR IRPLF K Y+N+ QV+  V+  D  S+P 
Sbjct: 66  YSAGKIPGGFIKREGRPSERSILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDQNSNPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            ++M+ +S AL +S +PF GP     V  I+G++++NP LD+   S + L VSGT++A++
Sbjct: 126 TMAMIGSSIALSISSIPFNGPTGSVSVGLIDGEFIINPDLDQRAKSQMYLVVSGTKEAIM 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKLEE-- 242
           MVE  ++++SED +L AI+F H E K ++  I ++     K  + +V+    F   EE  
Sbjct: 186 MVEAGSSEISEDTMLKAILFAHEEIKKIVGFIEEIVNDIGKPKDEVVL----FVPQEEIL 241

Query: 243 -EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +S+  K+ ++ +    +K  R + +D +KK ++ +F   +   N  ++  +   +   
Sbjct: 242 SAVSEYGKQKMKDAILTKDKQERLENMDKVKKDILEHFVDIYPD-NMKDVSEIIYKLTKD 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L  K+R D R  E +R I ++ G+L RTHGS+LF RG TQ + + TLG   D Q
Sbjct: 301 GVRELILKDKIRPDNRMHEEIRPIWSEAGVLPRTHGSALFTRGQTQVMSITTLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D LS  +   +M HYNF   + GE      P RREIGHG LA RA+ P+LP    FPY
Sbjct: 361 ILDGLSEEEEKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALEPMLPSKEDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+  S+GS+S A+VCGS+L+L+DAGVP+   VAGIAMGL+K+GDD  ILSDI G
Sbjct: 421 AIRVVSEVLSSNGSTSQASVCGSTLSLLDAGVPLKDMVAGIAMGLIKEGDDVAILSDIQG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI E I+  AL+QA+ GRLHILNEM K LS 
Sbjct: 481 MEDFLGDMDFKVAGTEKGITAIQMDIKIAGIDEEILTRALEQARVGRLHILNEMKKTLSA 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ E+ P +  M I PD+IR+VIG GGKVI  I+E+TG K++I++DG V IA+ +  
Sbjct: 541 PREEISEYAPMIITMKIDPDKIRDVIGPGGKVINKIIEETGVKIDIENDGNVFIAAVARD 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + AR MI +I  VPEV + Y G+V K+M FGAF+     ++GL+H+SQ+  +RV K  
Sbjct: 601 MGKKARAMIENIVKVPEVGQKYMGKVTKLMAFGAFMEILPGKEGLLHVSQIDVKRVNKVE 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+  GD   V L + D +G++ LS K +
Sbjct: 661 DVLSVGDEFEVLLTEIDAQGRMNLSRKAL 689


>gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 695

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 314/680 (46%), Positives = 456/680 (67%), Gaps = 7/680 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPLTVNY+E+ YA
Sbjct: 11  QWAGKTLTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+  + +  P + 
Sbjct: 70  VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S +L +S +PF+GP+ G  V Y++G+YV+NP +++ ++ ++DL V+GT DA+ MV
Sbjct: 130 AMLGSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGTSDAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247
           E  A ++SE+++L+AI+FGH E K +IE   ++     +E + ++ K   + +  E+  M
Sbjct: 190 EAGAKEVSEEIMLNAIMFGHEEIKRLIEFQQQIVNEIGQEKMAVELKVIDETIYNEVLSM 249

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303
               ++ +  I +K  R + I  +K+K++  F    ++ +E +IV       + I    V
Sbjct: 250 ALSQMKEAIAIKDKQERDEAISAVKEKVLEVFEERATAEDELDIVKEAKLSLDKIVKDEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  + + KVR DGR    +R ++++V +L RTHGS+LF RG TQ++ VVTLG   DEQ +
Sbjct: 310 RREITEDKVRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+P    FPYT+
Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + + IL+DI G E
Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKSQVAGIAMGLVKKDEHYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL+ M+ +++E R
Sbjct: 490 DHLGDMDFKVAGTAEGITALQMDIKIDGLSEQILKESLEQARVGRLQILDHMNSIIAEPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++  F P+++I+ I P++I++VIG GGKVI  I+E+TG K++I+ +G V I+S  +  I
Sbjct: 550 QEVSTFAPKIKIIKIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQNGDVFISSPEIEGI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A E+I +IT   EV +IY  +V ++  FGAFV      D LVHIS+L+ ERV K  DV
Sbjct: 610 NKAIEIIENITREAEVGEIYLAEVKRIEKFGAFVELFPGVDALVHISKLAEERVNKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKI 683
           VK GDT+ VK++  D++G++
Sbjct: 670 VKVGDTLKVKVIKIDEKGRV 689


>gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
 gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
          Length = 750

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 317/702 (45%), Positives = 453/702 (64%), Gaps = 20/702 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+   V     G+ +  ETGR+A Q+ GAV    G TVVL TV   + L+  + FFPLT
Sbjct: 5   IFNPTRVTATVGGKEIIFETGRLANQAHGAVWVQCGGTVVLVTVC-SQPLEFDKGFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR IRPLF K    + QV+ +V+ 
Sbjct: 64  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVIS 123

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D E+   V+++  ASAA+MLS LPFEGPV G ++  I+GQ+VLNP  +E + S L++  
Sbjct: 124 ADQENESDVLALTGASAAVMLSPLPFEGPVAGGRIGRIDGQFVLNPTFEEQERSDLNIVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKD 236
           + ++DA+ MVE EA  + EDV++DA+ +G  E +P+I+A  KL ++  KE  P      D
Sbjct: 184 AASRDALTMVEGEATFVPEDVIIDALEWGRKEIQPLIDAQLKLRELAGKEKMPFTPHQDD 243

Query: 237 ---FSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
               ++++E   +  I+E LRV    PEK  R      +K K++    ++  +W E E +
Sbjct: 244 PVLVARVQELAREAGIEEALRV----PEKLARKDARKAVKDKVMEALLND-PAWAESEAL 298

Query: 293 S----VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
                +  D++ K++R  ++++ VR+DGRD++TVR I  Q  +L R HGS++F RG+T++
Sbjct: 299 KEVGEIIGDLEKKIMRARIVNEGVRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKS 358

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +VV TLG+  DEQ + SLSG     FM+HYNF P + GEV  +   SRREIGHG LA ++
Sbjct: 359 LVVTTLGSSTDEQRMGSLSGDVTKRFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEKS 417

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PV+P  A FP+T+R+VSE  ES+GSSSMA VCG  L+LMDAG+PIS PVAG+AMGL+K
Sbjct: 418 LRPVMPADADFPFTVRVVSETVESNGSSSMAAVCGGCLSLMDAGIPISAPVAGVAMGLIK 477

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +GD FI+L+DI GDED LG MDFK+AGT  G+T +QMD+KI G++ +IM  A+QQA  GR
Sbjct: 478 EGDKFIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTDIMRQAMQQAHEGR 537

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL EM+K L E R +L  + P+   + + PD IR +IG GGK I+ I   TGA V+I+
Sbjct: 538 LHILAEMAKALPEPRKELSRYAPQHAEIFVNPDIIRLIIGPGGKNIKAITTATGASVDIE 597

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G V I + +   +E AREM+      PE+ K Y  +V K+M+ GA V      + LVH
Sbjct: 598 DSGRVSIFAPTADALEKAREMVTYYDQRPELGKNYTAKVKKIMEIGAIVEVLPNVEALVH 657

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +SQL   RV +  DV + G+ + VK+++ +   +I+ S K V
Sbjct: 658 VSQLDVNRVEQPGDVARLGEDMVVKVIEING-DRIRASRKAV 698


>gi|164688511|ref|ZP_02212539.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
           16795]
 gi|164602924|gb|EDQ96389.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
           16795]
          Length = 701

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/692 (43%), Positives = 445/692 (64%), Gaps = 2/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +E AGR L +E G+IA+ + G+ +  YGET+V+  V      ++G DFFPL+
Sbjct: 1   MFEHKIFTMELAGRELSVEIGKIAQLASGSAILKYGETMVMVNVSKSAEPREGVDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGKIPGG+L+RE + +E   L SR+IDR IRPLF K ++N+ QV+  V+  
Sbjct: 61  VDYEEKLYSVGKIPGGFLKREGKASEKATLTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P VV+M+ +S AL +S +PF GP     V  ++G  V+NP  ++ ++ SL L VS
Sbjct: 121 DHDCTPDVVAMIGSSVALSISEIPFNGPTGSVNVGLVDGALVINPTAEQREKSSLHLTVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+DAV+MVE  A+++ E ++L+AI+  H E K ++  I ++     KE +  I+ K   
Sbjct: 181 GTKDAVMMVEAGADEVPESLMLEAILTAHEEIKKIVAFIEEIVAEVGKEKMEFIEPKADE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +E ++ ++  + ++ +  + EK  R + +D +K +++  F  E      G+IV+V + I
Sbjct: 241 DIEAKVRELATDKMKEAVRVIEKLERQEAMDAVKNEVLDSFDEEALEEFGGDIVAVLDKI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR +++ +  R D R ++ +R I    G + RTHGS LF RG TQ + + TLG   
Sbjct: 301 IKEEVRKMIVHEGRRPDARKTDEIRPIWCDCGFIPRTHGSGLFTRGQTQVMTITTLGALG 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L   +   +M HYNF   + GEV     P RREIGHG LA RA+ PV+P   +
Sbjct: 361 DVQILDGLDEEESKRYMHHYNFPAYSVGEVRPSRGPGRREIGHGALAERALLPVIPSKEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSE+  S+GS+S  +VCGS+L+L+DAGVPI   VAGIAMGL++      ILSD
Sbjct: 421 FPYAIRLVSEVLSSNGSTSQGSVCGSTLSLLDAGVPIKDMVAGIAMGLIEQDGKIAILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT+ GITA+QMD+KI GI E I+  AL QA+ GRLHILNEM K 
Sbjct: 481 IQGMEDHLGDMDFKVAGTEHGITAIQMDIKIAGIDEEILRTALAQARVGRLHILNEMRKT 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R  L ++ P++  M I PD+IR+VIG GGKVI  I+++TG K++I+  G V I+  
Sbjct: 541 IDAPRPHLSKYAPKIITMNINPDKIRDVIGPGGKVITKIIDETGVKIDIEQTGEVFISGI 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+ A++ I  I    EV ++YKG+V ++++FGAFV     ++GL+HIS ++ ERV 
Sbjct: 601 DQEMIDLAQKKISDIVAEVEVGQVYKGKVTRILNFGAFVELLPGKEGLLHISHIAHERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DV+  GD V VK+ + D++G++ +S K +
Sbjct: 661 KVEDVLNIGDEVEVKVTEIDEKGRVNVSRKAL 692


>gi|78358207|ref|YP_389656.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123754803|sp|Q30WI5|PNP_DESDG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78220612|gb|ABB39961.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 750

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 313/697 (44%), Positives = 455/697 (65%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F    +     G+ + +ETGR+A Q+DGAV    G TVVL TV   + L+    FFPL 
Sbjct: 4   LFGAKRLTATVGGKEIIMETGRLANQADGAVWIQCGGTVVLCTVCT-QPLEREISFFPLV 62

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V+Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR +RPLF K + NE Q++ NV+ 
Sbjct: 63  VDYTEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPLRPLFPKGFTNEVQILANVIS 122

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+   V+++  +SAA+MLS +PFE PV GA+V  I+G++VLNP + E  +  L+L V
Sbjct: 123 ADQENDSDVLALCGSSAAVMLSSVPFEAPVAGARVCRIDGEFVLNPTITEAAKADLNLVV 182

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +  +DA++MVE EA+ + E+V+  A+ + H E +P+I+   KL ++  K  I  +  ++ 
Sbjct: 183 AANRDALVMVEGEADFVPEEVIAQALEWAHREVQPIIDMQEKLRELAGKAKIEFVAPEED 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+E+   +   DL  +  + EK  R +    +K+K+ +    + +     E ++   D
Sbjct: 243 TELKEKAEALATADLAAALQVREKMARKEAKKAVKEKVKAALLQDPAFAETPERLAALGD 302

Query: 298 I----QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           I    + ++VR  +L + +R+DGRD++TVR I  + G L R HGS++F RG+T+++VV T
Sbjct: 303 ILSSLEKRIVRQRILKEGLRIDGRDTKTVRPIIIEAGALPRAHGSAIFSRGETKSLVVTT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  DEQ +DSL+G     FM+HYNF P + GEV  +   SRREIGHG LA RA+ PVL
Sbjct: 363 LGSTTDEQRMDSLTGDVTKRFMLHYNFPPYSVGEVKPVRV-SRREIGHGALAERALRPVL 421

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FP+TLR+VSE  ES+GSSSMA VCG SL+LMDAGVP+  PVAGIAMGL+K+ D F
Sbjct: 422 PSPDSFPFTLRVVSETMESNGSSSMAAVCGGSLSLMDAGVPVKAPVAGIAMGLIKEDDQF 481

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I+L+DI GDED LG MDFK+AGT  G+TA+QMD+KI G+   +M  AL QA+  RLHILN
Sbjct: 482 IVLTDILGDEDALGDMDFKIAGTAEGVTAVQMDIKIDGLPAEVMGRALAQAREARLHILN 541

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+KVL E R  L ++ P++ ++ + P+ IR +IG GGK I+ I   TGA ++I+D G +
Sbjct: 542 EMAKVLPEPRQALSKYAPQLSVVEVNPEIIRVIIGPGGKNIKAITSATGASIDIEDSGRI 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   ++ AREM+      PE+ K Y  +V K+M+ GA V      + L+HISQL 
Sbjct: 602 SIFAPTKESMDMAREMVMYYDQRPELGKNYTAKVRKIMEIGAIVEILPNCEALIHISQLD 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           T RV KT DVV+ G  V VK+++ +D G+++ S K V
Sbjct: 662 TSRVEKTEDVVQLGQDVEVKVIEIND-GRVRASRKAV 697


>gi|325831548|ref|ZP_08164802.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
 gi|325486802|gb|EGC89250.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
          Length = 741

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 309/687 (44%), Positives = 440/687 (64%), Gaps = 16/687 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E  G+  +LETG +A+Q+ G+V+ T G+T VL T V  +  KD  DFFPLTV++ E+ Y
Sbjct: 8   FELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTVDFIEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVG+IPGGYL+RE+RP++   L +RM+DR IRP F+  +K E  V+   +  D  + P  
Sbjct: 67  AVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDT 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
           + ++ ASAALML   PF+GP    ++  D   G++++NP  +E + S L+L ++GT D +
Sbjct: 127 ICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTIAGTADYI 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKL 240
            MVE  A+++SE+ +L A+ FG        EA  +       EP+     V D     ++
Sbjct: 187 SMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVADPAIAERV 246

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299
              M++M    LR +    +K  R  ++++LK ++    FS E  +  +G+I +  + ++
Sbjct: 247 APFMAEM-SAALRDA----DKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKKLE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K +R ++++   R DGR  E +R +    G L R HGS LF RG TQA+ V TLG   +
Sbjct: 302 KKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNE 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++   +   +M  YNF P  TGE  RMGAP RREIGHG LA RA+ PVLP   +F
Sbjct: 362 WQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSEDEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI  PV+GIAMGL+K+GDD +ILSDI
Sbjct: 422 PYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKV GT  GITA+QMD K  G+S +I+  AL+QA  GR +IL+ M + +
Sbjct: 482 QGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLETI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+  
Sbjct: 542 AAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAAIE 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               EAA+ MI  I   PEV + + G+VV + DFGAFV     +DGL+HIS+++  RV K
Sbjct: 602 GPAGEAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVGK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKL 685
             DV+  GD + V++L+ D + GKI L
Sbjct: 662 VEDVLNLGDIIKVEVLEVDPKTGKISL 688


>gi|218887594|ref|YP_002436915.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|226702648|sp|B8DN07|PNP_DESVM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218758548|gb|ACL09447.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 756

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 307/697 (44%), Positives = 459/697 (65%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+   V     G+ + LETGR+A Q+ GAV    G TVVL T    + L+    FFPLT
Sbjct: 4   VFNATRVSAVVGGKEIILETGRLANQAHGAVWVQCGGTVVLVTACT-QPLERDMGFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V+Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR +RPLF+K +++E Q++ NV+ 
Sbjct: 63  VDYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPVRPLFTKGFRDEVQILANVIS 122

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D E+   V+++  ASAAL +S +PFEGPV GA++  +NG++VLNP + E + S L + +
Sbjct: 123 ADQENDSDVLAVTGASAALSISPIPFEGPVAGARIGRVNGEFVLNPTMKEMEASDLAIVI 182

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           + ++D+V+MVE EA+ + EDV++ A+ + H E +P+I+A  KL ++  K  + +    + 
Sbjct: 183 AASRDSVVMVEGEAHFVPEDVIVAALEWAHKEIQPLIDAQLKLMELVGKAKMAVTPPVEN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEG-EIVS 293
           ++L+  ++++   +L  +  IPEK  R      +K+K++    ++ +   + N G E+  
Sbjct: 243 AELKARVAELATTELDAALRIPEKMARKDARKAVKEKVLEALLADPALAENANLGREVGD 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   ++  +VR  +L +  R+DGRD++TVR I  + GLL R HGS+LF RG+T+++VV T
Sbjct: 303 MLGSLEKVLVRRRILKEGTRIDGRDTKTVRPILIEAGLLPRAHGSALFSRGETKSLVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  D Q +DSL G     FM+HYNF P + GEV +M   SRREIGHG LA +A+ PVL
Sbjct: 363 LGSSTDSQRMDSLVGDVTKKFMLHYNFPPYSVGEV-KMSRVSRREIGHGALAEKALKPVL 421

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           PQ   FP+TLR+V+E  ES+GSSSMA VCG SL+LMDAGVP++ PVAG+AMGL+K+  ++
Sbjct: 422 PQDDSFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVTAPVAGVAMGLIKEEGEY 481

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI GDED LG MDFK+AGT  GITA+QMD+KI G+  ++M  A+ QA+  RLHIL 
Sbjct: 482 LVLTDILGDEDALGDMDFKIAGTAEGITAVQMDIKITGLPTDVMARAMAQAREARLHILA 541

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+KVL   R +L ++ P+   + + PD IR +IG GGK I+ I   TGA ++I+D G V
Sbjct: 542 EMAKVLEAPRTELSKYAPQHAEVFVNPDVIRIIIGPGGKNIKAITAATGASIDIEDSGKV 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   +E AREM++      E+ K Y G+V KV++ GA V      + LVHISQL 
Sbjct: 602 SIFAPTYEAMEMAREMVQYYDQRAELGKNYVGKVRKVLEIGAIVEILPNLEALVHISQLD 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           T RV +  DV + G+ + VK+++ +   +I+ S K V
Sbjct: 662 TNRVEQAGDVARLGEDMTVKVIEING-DRIRASRKAV 697


>gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
 gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
          Length = 747

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 306/699 (43%), Positives = 454/699 (64%), Gaps = 13/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+   V  +  G+ +  E GR+A Q+ GAV    G TVVL TV   + L+  + FFPLT
Sbjct: 5   IFNPTRVTAQVGGKEVIFECGRLANQAHGAVWMQCGGTVVLVTVC-SQPLEFDKGFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR IRPLF K    + QV+ +V+ 
Sbjct: 64  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVIS 123

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+   V+++  ASAALM+S LPFEGPV G ++  +NGQ+VLNP  ++  Q  L++  
Sbjct: 124 ADQENESDVLALTGASAALMVSPLPFEGPVAGGRIGRVNGQFVLNPSFEQQAQSDLNILF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDF 237
           + ++DA+ MVE +A  LSEDV+++A+ +G  E +P+I+A  +L ++C K  +     +D 
Sbjct: 184 AASRDALTMVEGDARFLSEDVIIEALDWGRKEIQPLIDAQLQLRELCGKAKMAFTPHEDD 243

Query: 238 SKLEEEMSQMIKE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----I 291
             L   + ++ +E  +  +  +P+K  R      +K K++    ++  +W E E     +
Sbjct: 244 PALLARVHELAREAGIEDALRVPDKLERKDARKAVKGKVMEALKAD-PAWAENEAALKSV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +  D++ K+VR  ++++  R+DGRD+++VR I  Q G+L R HGS+LF RG+T+++V+
Sbjct: 303 GDIIGDLEKKLVRARIVNEGTRIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVI 362

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG+  DEQ +DSL+G     FM+HYNF P   GEV  +   SRREIGHG LA +++ P
Sbjct: 363 ATLGSSTDEQRMDSLTGDVTKRFMLHYNFPPYCVGEVKPVRV-SRREIGHGALAEKSLRP 421

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP  A FP+TLR+V+E  ES+GSSSMA VCG SL+LMDAGVP+S PVAG+AMGL+K+G+
Sbjct: 422 ILPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEGE 481

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            FI+L+DI GDED LG MDFK+AGT  G+T +QMD+KI G++ +IM  A++QA+ GRLHI
Sbjct: 482 KFIVLTDILGDEDALGDMDFKIAGTADGVTGVQMDIKITGLTTDIMRAAMRQAREGRLHI 541

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM++ ++E R +L  F P+   + + PD IR +IG GGK I+ I   TGA V+I+D G
Sbjct: 542 LAEMARAIAEPRKELSRFAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDIEDSG 601

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I + +   +E AREM+      P++ K Y  +V KVM+ GA V      + LVH+SQ
Sbjct: 602 RVSIFAPTAEALEKAREMVAYYDQRPDLGKNYLAKVRKVMEIGAIVEVLPNVEALVHVSQ 661

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           L   RV +  DV + G+ + VK+++ +   +I+ S K V
Sbjct: 662 LDVNRVEQPGDVARLGEDMLVKVIEING-DRIRASRKAV 699


>gi|317490521|ref|ZP_07948999.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
           1_3_56FAA]
 gi|316910372|gb|EFV32003.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
           1_3_56FAA]
          Length = 741

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/687 (44%), Positives = 440/687 (64%), Gaps = 16/687 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E  G+  +LETG +A+Q+ G+V+ T G+T VL T V  +  KD  DFFPLTV++ E+ Y
Sbjct: 8   FELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTVDFIEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVG+IPGGYL+RE+RP++   L +RM+DR IRP F+  +K E  V+   +  D  + P  
Sbjct: 67  AVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDT 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
           + ++ ASAALML   PF+GP    ++  D   G++++NP  +E + S L+L ++GT D +
Sbjct: 127 ICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTIAGTADYI 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKL 240
            MVE  A+++SE+ +L A+ FG        EA  +       EP+     V D     ++
Sbjct: 187 SMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVADPAIAERV 246

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299
              M++M    LR +    +K  R  ++++LK ++    FS E  +  +G+I +  + ++
Sbjct: 247 APFMAEM-SAALRDA----DKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKKLE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K +R ++++   R DGR  E +R +    G L R HGS LF RG TQA+ V TLG   +
Sbjct: 302 KKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNE 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++   +   +M  YNF P  TGE  RMGAP RREIGHG LA RA+ PVLP   +F
Sbjct: 362 WQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSEDEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI  PV+GIAMGL+K+GDD +ILSDI
Sbjct: 422 PYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKV GT  GITA+QMD K  G+S +I+  AL+QA  GR +IL+ M + +
Sbjct: 482 QGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLETI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+  
Sbjct: 542 AAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAAIE 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+ MI  I   PEV + + G+VV + DFGAFV     +DGL+HIS+++  RV K
Sbjct: 602 GPAGDAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVGK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKL 685
             DV+  GD + V++L+ D + GKI L
Sbjct: 662 VEDVLNLGDIIKVEVLEVDPKTGKISL 688


>gi|257791379|ref|YP_003181985.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
           2243]
 gi|257475276|gb|ACV55596.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
           2243]
          Length = 741

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/687 (44%), Positives = 440/687 (64%), Gaps = 16/687 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E  G+  +LETG +A+Q+ G+V+ T G+T VL T V  +  KD  DFFPLTV++ E+ Y
Sbjct: 8   FELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTVDFIEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVG+IPGGYL+RE+RP++   L +RM+DR IRP F+  +K E  V+   +  D  + P  
Sbjct: 67  AVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDT 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
           + ++ ASAALML   PF+GP    ++  D   G++++NP  +E + S L+L ++GT D +
Sbjct: 127 ICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTIAGTADYI 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKL 240
            MVE  A+++SE+ +L A+ FG        EA  +       EP+     V D     ++
Sbjct: 187 SMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVADPAIAERV 246

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299
              M++M    LR +    +K  R  ++++LK ++    FS E  +  +G+I +  + ++
Sbjct: 247 APFMAEM-SAALRDA----DKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKKLE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K +R ++++   R DGR  E +R +    G L R HGS LF RG TQA+ V TLG   +
Sbjct: 302 KKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNE 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++   +   +M  YNF P  TGE  RMGAP RREIGHG LA RA+ PVLP   +F
Sbjct: 362 WQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSEDEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI  PV+GIAMGL+K+GDD +ILSDI
Sbjct: 422 PYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKV GT  GITA+QMD K  G+S +I+  AL+QA  GR +IL+ M + +
Sbjct: 482 QGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLETI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+  
Sbjct: 542 AAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAAIE 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+ MI  I   PEV + + G+VV + DFGAFV     +DGL+HIS+++  RV K
Sbjct: 602 GPAGDAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVGK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKL 685
             DV+  GD + V++L+ D + GKI L
Sbjct: 662 VEDVLNLGDIIKVEVLEVDPKTGKISL 688


>gi|281492468|ref|YP_003354448.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376132|gb|ADA65623.1| Polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 773

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 294/695 (42%), Positives = 444/695 (63%), Gaps = 11/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      + +  G DFFPL VNY+
Sbjct: 4   ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 62  EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S  V +M  +S AL +S +PF+GP+ G +V YI+G+Y++NP + E + S L+L V+G  +
Sbjct: 122 SGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNIN 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++     + L+ 
Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297
           E+      DL+ +  I EK  R      +K+ ++S +S+++ +     I+      + E 
Sbjct: 242 EVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355
           ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL 
Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLA 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP 
Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +
Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +
Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   I
Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS  A I+ A+E+I  +    +V +IY  +VV++  FGAFV+  G +D +VHIS+++  
Sbjct: 602 FSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAWS 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R     DVVK GDTV VK++  DD+G++  SM+ +
Sbjct: 662 RTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRAL 696


>gi|94984509|ref|YP_603873.1| polynucleotide phosphorylase/polyadenylase [Deinococcus
           geothermalis DSM 11300]
 gi|122986710|sp|Q1J1D0|PNP_DEIGD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94554790|gb|ABF44704.1| Polyribonucleotide nucleotidyltransferase [Deinococcus geothermalis
           DSM 11300]
          Length = 721

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/681 (45%), Positives = 439/681 (64%), Gaps = 10/681 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L +ETG++A+ + G+V   YG+T++L T    R  +   DF PLTV ++ER YAVG+
Sbjct: 12  GRELSIETGKLAKLASGSVTLRYGDTLLLVTA-QAREERSTLDFLPLTVEFEERHYAVGR 70

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE RP E+ IL +R+ DR IRPLF K Y+ ETQVII V+  D +++P V+  +
Sbjct: 71  IPGSFHRREGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQNAPDVLGAI 130

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            ASAAL LS +P+ GP    +V  I+G+YV+NP  D+  + SLDL V+GT+DAV MVE  
Sbjct: 131 GASAALSLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDLVVAGTRDAVNMVEAG 190

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249
           A  +SE+ ++ AI F H E + V++ I  +     +E    ++DS   + L  E+S+  +
Sbjct: 191 AQGVSEETLVGAIEFAHRELQGVLDLIETMRAEVGREKFNFLVDSDLSTDLVPELSEAAR 250

Query: 250 E-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV----SVFEDIQAKVVR 304
              LR +    +K  R   +  L+ ++++    +  +    E +    + F  ++ + +R
Sbjct: 251 AAGLRDALLTTKKQERSANLKALRDRLIAERVPDPEAAGAAEQIEALKAAFAKVEKQELR 310

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L + +R DGR+S+TVR I  +   L R HGS++F RG+TQ + V TLGT  DE  VD
Sbjct: 311 RLILQEDLRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVD 370

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L+G   + F++HYNF P +TGEV R+G  SRRE+GHG LA+RAI  VLP    FPY +R
Sbjct: 371 NLTGETNDRFLLHYNFPPYSTGEVKRVGGQSRREVGHGNLAKRAIRAVLPAFDDFPYVIR 430

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +V E+ ES+GSSSMATVC  +L+LMDAGVPI  PVAG+AMGLV +G+ + IL+DI G ED
Sbjct: 431 VVGEVLESNGSSSMATVCAGTLSLMDAGVPIQAPVAGVAMGLVMEGEQYRILTDILGLED 490

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKV GT  G+TA+QMD+K+ G++  IM  AL QA+  RLHIL +M++VL   R 
Sbjct: 491 ALGDMDFKVCGTAEGVTALQMDIKVSGVTPAIMREALAQAREARLHILGKMAEVLPAPRP 550

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L    PR+  + I P+ I  VIG GGK +R + E  GA+V I++DG ++I S+  A  E
Sbjct: 551 ELSPTAPRILTLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGNIRIFSADGAAAE 609

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A R+ I  +T   +V + Y+G VVK   FGAFV+    +DG++HISQ+S  RV    DV+
Sbjct: 610 AVRQKIEGLTREAKVGEEYEGTVVKTAPFGAFVNLFPGQDGMLHISQMSENRVNAVEDVL 669

Query: 665 KEGDTVWVKLLDFDDRGKIKL 685
             GD + VK+ + DDRGKI L
Sbjct: 670 NVGDRLRVKIANIDDRGKIDL 690


>gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus
           UQM 2246]
          Length = 749

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/691 (44%), Positives = 440/691 (63%), Gaps = 11/691 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE E+ GR L LETG+ A+Q+ GAVL TYGET VL   V + S   G+DFFPL V Y+ER
Sbjct: 8   VECEFGGRTLVLETGKFAKQAHGAVLVTYGETSVLVAAV-EGSPIPGRDFFPLQVEYRER 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GK PGG+++RE+RP+  E L SR+IDR  RPLF   Y NE Q+   V+  D E+  
Sbjct: 67  TYAAGKFPGGFIKRETRPSTKETLTSRLIDRPSRPLFPANYFNEVQIHCTVISSDRENDA 126

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +++++  SAAL +S +PF  P  G ++  +NG+ V+ P + + ++  LDL V+ T+DAV
Sbjct: 127 DMLALIGTSAALHVSHIPFLKPYGGLRLGRVNGELVVLPTVTQMEESDLDLIVAATRDAV 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL---AKMCAKEPIVIDSKDFSKLEE 242
            M+E  A ++ E+ + DAI+  H +C  +I+ I +L   A +  K  ++  +   + L E
Sbjct: 187 CMIEGFAREMPENEMGDAIMEAHKQCAVLIDLIERLRTEAGLGTK--VLPPATADNPLLE 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFEDIQ 299
           E+ Q      R       K  R   +D  K ++   +  E   + ++   ++      ++
Sbjct: 245 ELHQKYGAQYREKYLTQGKKERNAALDAFKDEIKKVYLPEGEANPAYTPSQVSGALSALR 304

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++ R + L    R+DGR  + +R + A+V +L RTHG++LF RG+TQA+VV TLGT  D
Sbjct: 305 ERIFREITLGG-TRIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVAD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ VD L       F + YNF P + GE   + AP RREIGHG LA R++  V+P  ++F
Sbjct: 364 EQKVDGLQDEYSKKFFLDYNFPPYSVGECKPIRAPGRREIGHGMLAERSLKAVIPPPSRF 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMA+VCG +LALMDAGVPI +PVAGI++GLV + D F +L+DI
Sbjct: 424 PYTIRLVSEILESNGSSSMASVCGGTLALMDAGVPIKRPVAGISVGLVMEKDHFSLLTDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDH G MDFKVAGT  G+T +Q+D+K+ GI+E I+  AL+QAK  RL IL  M   L
Sbjct: 484 QGDEDHYGDMDFKVAGTQKGVTGVQLDIKVDGINEAIVRGALEQAKEARLQILKTMLSAL 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R ++  + PR+  + I P+ I  +IG GGK+IR I E+TGAK++I+DDGTV IASS 
Sbjct: 544 SAPRKEISRWAPRLIQLKINPEMIGKLIGPGGKMIRAIQEETGAKIDIEDDGTVSIASSD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              +EAAR M+  +T   +V  +Y G+VV + DFGAFV     RDGL H+S+L +  V +
Sbjct: 604 AEGVEAARRMVEGLTAEVKVGAVYDGKVVSMKDFGAFVEIAPGRDGLCHVSELDSGFVQR 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV+ G  + VK++  DD G+++LS K +
Sbjct: 664 PEDVVEIGQKIQVKVIGIDDNGRVRLSRKAL 694


>gi|329767316|ref|ZP_08258841.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
           M341]
 gi|328836005|gb|EGF85696.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
           M341]
          Length = 695

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 313/680 (46%), Positives = 455/680 (66%), Gaps = 7/680 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPLTVNY+E+ YA
Sbjct: 11  QWAGKTLTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+  + +  P + 
Sbjct: 70  VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S +L +S +PF+GP+ G  V Y++G+YV+NP +++ ++ ++DL V+GT DA+ MV
Sbjct: 130 AMLGSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGTIDAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247
           E  A ++SE+++L+AI+FGH E K +I    ++     +E + ++ K   + + +E+  M
Sbjct: 190 EAGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIVDEIGQEKMAVELKVIDETIYKEVLSM 249

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303
               ++ +  I +K  R + I  +K+K++  F  + +  +E +IV       + I    V
Sbjct: 250 ALSQMKEAIAIKDKQERDEAISAVKEKVLEVFEEKATDEDELDIVKEAKLSLDKIVKDEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  + + K+R DGR    +R ++++V +L RTHGS+LF RG TQ++ VVTLG   DEQ +
Sbjct: 310 RREITEDKIRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+P    FPYT+
Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + + IL+DI G E
Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL  M+ ++SE R
Sbjct: 490 DHLGDMDFKVAGTSEGITALQMDIKIDGLSEQILKESLEQARVGRLQILEHMNSIISEPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++  F P+++I+ I P++I++VIG GGKVI  I+E+TG K++I+ +G V I+S  +  I
Sbjct: 550 QEVSTFAPKIKIIKIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQNGDVFISSPEIEGI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A E+I +IT   EV +IY  +V ++  FGAFV      D LVHIS+L+ ERV K  DV
Sbjct: 610 NKAIEIIENITREAEVGEIYLAEVKRIEKFGAFVELFPGVDALVHISKLAEERVNKVEDV 669

Query: 664 VKEGDTVWVKLLDFDDRGKI 683
           VK GDT+ VK++  D++G++
Sbjct: 670 VKVGDTLKVKVIKIDEKGRV 689


>gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
 gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
          Length = 700

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 311/692 (44%), Positives = 453/692 (65%), Gaps = 10/692 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           + V++     P+  ETG  A+Q++G++    G +VVL T V  +   +  DFFPLTVNY 
Sbjct: 8   YEVKLTEDSEPIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFFPLTVNYI 67

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+++RE +P++ E LISR+IDR IRPLF + ++NETQ+I  V+  D  +
Sbjct: 68  EKFYAVGKIPGGFIKREGKPSDKETLISRLIDRPIRPLFPEGFRNETQIIATVVSSDQVN 127

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183
           S  ++++ AASAALM+S +PFEGP+   +V  ING+YV+NP     D   +++ V+GT+D
Sbjct: 128 STDILALNAASAALMISDIPFEGPIGAVRVGKINGEYVINPSAAIFDDLEMNIVVAGTED 187

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           +++MVE      SE+ V++A+ FGH   K ++E   ++     KE    +  DFS  E++
Sbjct: 188 SIVMVEAGMKNCSEEDVVNALEFGHEAIKKLVEVQKRMRDEIGKEKF--EYMDFSVSEDD 245

Query: 244 MSQM---IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFED 297
           ++++   I + L+ +  IP K  + + ID +K++       E       N+G    ++++
Sbjct: 246 LNKLYDEIGDKLKEAVLIPGKLEKYEAIDKVKEEYFEKLKEELGDEFEENKGYYNELYQE 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ KV R + L+   R+DGR    +R I  +V LL   HGS+LF RG+TQA+V  TLGT+
Sbjct: 306 VEKKVFRDITLNSGKRVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTK 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L G     FM+HYNF P + GE+  + AP RREIGHG LA RA+  +LP   
Sbjct: 366 FDSQLLDDLEGETYKRFMLHYNFPPFSVGEIGFLRAPGRREIGHGFLAERALASMLPGED 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIIL 476
           +FPYT+R+VSEI ES+GSSSMATVCG SLALMDAGVPI   VAGIAMGL+ +GDD ++IL
Sbjct: 426 EFPYTIRVVSEILESNGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGDDNYVIL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKV GT++GITA+QMD+KI G+   I+  AL QAK GRL IL +M 
Sbjct: 486 SDIMGIEDHLGDMDFKVTGTETGITALQMDIKIKGLKREILEKALAQAKEGRLFILQKMK 545

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            VL++ R ++    PR   + I P+++  +IG  GK I+ I+++TG K++I ++G + I 
Sbjct: 546 AVLAKPREEVSPKAPRFVKVKINPEKVGLLIGPAGKTIKSIIDKTGVKIDILEEGELHIF 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            ++   I++A EMI ++T    V KIY  +V +V+D+GAFV      +GL+H+SQ S ER
Sbjct: 606 GNNKEAIDSAIEMIEAVTQELTVGKIYNAKVKRVVDYGAFVELFPGVEGLLHVSQFSKER 665

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +    D VK GD++ V+ L  DD+G+IKLS K
Sbjct: 666 IENIRDHVKVGDSLDVEYLGKDDQGRIKLSRK 697


>gi|125624816|ref|YP_001033299.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|187610279|sp|A2RMS5|PNP_LACLM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|124493624|emb|CAL98611.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071615|gb|ADJ61015.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 766

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 291/695 (41%), Positives = 446/695 (64%), Gaps = 11/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      + +  G DFFPL VNY+
Sbjct: 4   ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 62  EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S  V +M  +S AL +S +PF+GP+ G +V YI+G+Y++NP + E + S L+L V+G  +
Sbjct: 122 SGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLELSVAGNIN 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++     + L+ 
Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297
           E+      DL+ +  + EK  R      +K+ ++S +S+++ +     I+      + E 
Sbjct: 242 EVIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355
           ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL 
Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLA 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP 
Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +
Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +
Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTREGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   I
Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS  + I+ A+E+I  +    +V ++Y+ +VV++  FGAFV+  G +D +VHIS+++  
Sbjct: 602 FSSDQSAIDRAKEIIAELVREAKVGEVYEAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R AK  DV+K GD V VK++  DD+G++  SM+ +
Sbjct: 662 RTAKVEDVMKLGDVVKVKIMKIDDKGRVDASMRAL 696


>gi|297623850|ref|YP_003705284.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
           DSM 17093]
 gi|297165030|gb|ADI14741.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
           DSM 17093]
          Length = 726

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/683 (45%), Positives = 434/683 (63%), Gaps = 12/683 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETG+ A+   G+V   YG+TVVL T     +  D  DF PLTV Y+ER YA+G
Sbjct: 14  GGRELIIETGKYAKLVAGSVTVRYGDTVVLVTAHMSDTAAD-TDFLPLTVEYEERHYAIG 72

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPG + RRE RP     L +R+ DR IRPLF K  +NE QVII V+  D E+ P +++ 
Sbjct: 73  KIPGSFQRREGRPGTQATLNARITDRQIRPLFPKGLRNEVQVIITVLSADRENDPAMIAA 132

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           + ASAAL +S +P++GP     V Y++GQYVL P L     S L+L V+ ++DAVLMVE 
Sbjct: 133 IGASAALSISNIPWDGPTACVSVGYVDGQYVLYPSLQTLADSQLELTVAASEDAVLMVEA 192

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
            A++L ED ++ AI F   E + VIE I ++     +E + ++    S  EE+  ++ +E
Sbjct: 193 SADELPEDTMVGAITFAQREMQGVIELIKRMRAEIGQEKLPVEPP-LSPSEEDKERLYQE 251

Query: 251 ----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303
                L+     P K  R  +   L+  ++S    E ++  +   V++ ++  A  V   
Sbjct: 252 AVAAGLKEVLLTPSKKERSAKTKALRDALISKHVPEVANEEDARRVALLKEAFASAVQRE 311

Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R ++L++ +R DGR  E +R I  +VG+L +THGS++F RG+TQ + V TLGT +D++ 
Sbjct: 312 SRRMILEEDLRADGRAPEDIRPIWIEVGVLPKTHGSAVFTRGETQVLGVTTLGTGKDDRL 371

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L       FM+HYNF P +TGEV R+   SRRE+GHG LARRA+  ++P    F Y 
Sbjct: 372 IDDLGLETSETFMLHYNFPPFSTGEVKRLRGVSRRELGHGNLARRALERMMPSQDTFGYV 431

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+V+E  ES+GSSSMA+VC ++L++MDAGVP+ KPVAGIAMGL+K+GD + ILSDI G 
Sbjct: 432 VRVVAETLESNGSSSMASVCAATLSMMDAGVPLKKPVAGIAMGLIKEGDTYKILSDILGS 491

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKV GT  G+TA+QMD+KI GI+  IM  AL+QA+ GR HILN M +VLS  
Sbjct: 492 EDALGDMDFKVTGTHDGVTALQMDIKIKGITPEIMRAALEQARVGRRHILNLMDEVLSAP 551

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++ +  PR+  + IP D+I  VIG GGK IR + E  G +++I++ G VKI S   + 
Sbjct: 552 RSEVSKNAPRILTVQIPVDKIGAVIGPGGKQIREL-EALGVQIDIEESGLVKIYSEEASA 610

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            EA RE I ++T  PEV K Y G+V K+ +FGAFV      DGL+HISQ++ ERV    D
Sbjct: 611 AEAVREQIEALTATPEVGKTYDGRVAKITEFGAFVTLFPGTDGLLHISQIAEERVHNIED 670

Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685
            +K GDT+ VK+   D RGK+ L
Sbjct: 671 YLKVGDTLKVKIAGIDSRGKLDL 693


>gi|46446277|ref|YP_007642.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399918|emb|CAF23367.1| probable polyribonucleotide nucleotidyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 702

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 443/697 (63%), Gaps = 12/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T+ +    + +  ETG+IARQ+ GAV+   GETVV  T     +     DF PL V+YQ
Sbjct: 9   ETISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQ 68

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+  + GK  GG+++RE RPTE E+L+SR+IDR IRP+F + Y NE Q++  V  +D  +
Sbjct: 69  EKFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGIN 128

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           SP  +++  ASAAL++S +P   PV   ++ +I+ Q+++NP +++  Q  LDL ++GT++
Sbjct: 129 SPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEE 188

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI----SKLAKMCAKEPIVIDSKD-FS 238
           AVLM+E   + L+ED VL+AI  GH   K + + +    +K+ K   +E +    K+ ++
Sbjct: 189 AVLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYA 248

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFE 296
            +E   + ++++ LR+     EK  R + + ++ K +       +E   +    I  V +
Sbjct: 249 DVESIANPLLEKALRIC----EKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIK 304

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+ +K++R ++L++ VR DGR S  +R I  +  LL R HGSSLF RG+TQA+ V TLG 
Sbjct: 305 DVSSKMMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGG 364

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
               Q  + L G   N F + Y+F P + GEV R+GAP RREIGHG+LA RA+  V+P  
Sbjct: 365 ASMAQRFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTK 424

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R+ S ITES+GSSSMATVCG  LALMDAGV I +PVAGIAMGL+ + + FIIL
Sbjct: 425 EQFPYTIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIIL 484

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED LG MDFKV G  +GITA QMD+K+ GI+  IM +AL+QAK GR+HILN+M 
Sbjct: 485 SDILGIEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKML 544

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V    + ++  + PR+E + I P +I  VIG GGK IR I+EQTG +++IDD G V IA
Sbjct: 545 AVCPTYKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIA 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +  L  IE A+ +I  +T   E+ +IY G+ + +  FG FV     ++GL HIS+    R
Sbjct: 605 AIDLVSIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNR 664

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +    + VK+GD + VK+LD ++RG+IKLS K   Q+
Sbjct: 665 INSLDEFVKQGDMLMVKVLDINERGQIKLSRKATLQS 701


>gi|187610325|sp|Q6MDI2|PNP_PARUW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 697

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 304/697 (43%), Positives = 443/697 (63%), Gaps = 12/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T+ +    + +  ETG+IARQ+ GAV+   GETVV  T     +     DF PL V+YQ
Sbjct: 4   ETISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+  + GK  GG+++RE RPTE E+L+SR+IDR IRP+F + Y NE Q++  V  +D  +
Sbjct: 64  EKFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGIN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           SP  +++  ASAAL++S +P   PV   ++ +I+ Q+++NP +++  Q  LDL ++GT++
Sbjct: 124 SPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEE 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI----SKLAKMCAKEPIVIDSKD-FS 238
           AVLM+E   + L+ED VL+AI  GH   K + + +    +K+ K   +E +    K+ ++
Sbjct: 184 AVLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYA 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFE 296
            +E   + ++++ LR+     EK  R + + ++ K +       +E   +    I  V +
Sbjct: 244 DVESIANPLLEKALRIC----EKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+ +K++R ++L++ VR DGR S  +R I  +  LL R HGSSLF RG+TQA+ V TLG 
Sbjct: 300 DVSSKMMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGG 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
               Q  + L G   N F + Y+F P + GEV R+GAP RREIGHG+LA RA+  V+P  
Sbjct: 360 ASMAQRFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTK 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R+ S ITES+GSSSMATVCG  LALMDAGV I +PVAGIAMGL+ + + FIIL
Sbjct: 420 EQFPYTIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIIL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED LG MDFKV G  +GITA QMD+K+ GI+  IM +AL+QAK GR+HILN+M 
Sbjct: 480 SDILGIEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKML 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V    + ++  + PR+E + I P +I  VIG GGK IR I+EQTG +++IDD G V IA
Sbjct: 540 AVCPTYKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +  L  IE A+ +I  +T   E+ +IY G+ + +  FG FV     ++GL HIS+    R
Sbjct: 600 AIDLVSIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +    + VK+GD + VK+LD ++RG+IKLS K   Q+
Sbjct: 660 INSLDEFVKQGDMLMVKVLDINERGQIKLSRKATLQS 696


>gi|116512733|ref|YP_811640.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123320193|sp|Q02WZ5|PNP_LACLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116108387|gb|ABJ73527.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Lactococcus lactis subsp. cremoris SK11]
          Length = 769

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/695 (42%), Positives = 446/695 (64%), Gaps = 11/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      + +  G DFFPL VNY+
Sbjct: 4   ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 62  EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  V +M  +S AL +S +PF+GP+ G +V YI+G+YV+NP + E +  SL+L V+G  +
Sbjct: 122 SGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYVINPTVAEKESSSLELSVAGNIN 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++     + L+ 
Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297
           E+      DL+ +  + EK  R      +K+ ++S +S+++ +     I+      + E 
Sbjct: 242 EVIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355
           ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL 
Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLA 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP 
Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +
Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +
Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTREGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   I
Sbjct: 542 EATIAQPREELAPSAPKIDTIMIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS  + I+ A+E+I  +    +V ++Y+ +VV++  FGAFV+  G +D +VHIS+++  
Sbjct: 602 FSSDQSAIDRAKEIIAELVREAKVGEVYEAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R AK  DV+K GD V VK++  DD+G++  SM+ +
Sbjct: 662 RTAKVEDVMKLGDVVKVKIMKIDDKGRVDASMRAL 696


>gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 733

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/695 (42%), Positives = 456/695 (65%), Gaps = 8/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M ++ T E    GR L +E GR+A Q++GAV   YG+TVVL T V  +  + G DF PLT
Sbjct: 1   MPEIKTFERTIGGRNLVIENGRMAGQANGAVTVRYGDTVVLVTAVIAKEPRPGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++ +ER YA G+IPGG++RRE RP+E   L +R+ DR +RPL  K ++ E Q+I+ V+  
Sbjct: 61  IDVEERMYAAGRIPGGFIRREGRPSEQATLAARLADRPLRPLLPKSWRREIQIIVTVLTA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P V+ ++ AS AL +S +PF+GP+   +V +I+G++V+NP   + +  +LD+ V+
Sbjct: 121 DQENDPDVLGVIGASCALGISEMPFDGPLSAVRVGHIDGEFVINPTHSQLENSTLDVVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            T+ AV M+E  AN+  ED++ +AI FGH   + +I    ++     K    I++   + 
Sbjct: 181 STRSAVTMLEAGANEAPEDLMFEAIRFGHQANQEIIAIQDEIIAAVGKAKWTIEAPVVNP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L +++S +I   L  + +  +K  R + +D +K +++   + +   ++ G+I++ ++  
Sbjct: 241 ELMDKVSSIIDGKLAEAFYQADKARRQENLDKVKAELLEALNEDE--YDSGDIMAAWDKK 298

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             ++VR+ +LDKK R+ GR  E +R++SA+VG+L R HGS+LF RG TQ + VVTLG+ +
Sbjct: 299 IRQLVRSTILDKKERVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQ 358

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D++S      ++ HYNF P + GE  R+G   RREIGHG LA RA+ PV+P  A+
Sbjct: 359 MEQKLDNISPETSKRYIHHYNFPPYSVGETKRIGT-GRREIGHGALAERALLPVVPSEAE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFII 475
           FPY LR+VSE   S+GS+SMA+ C SSL+LMDAGVPI KPVAGI++GL+ D    D F+ 
Sbjct: 418 FPYALRLVSEAVSSNGSTSMASACASSLSLMDAGVPIKKPVAGISIGLITDDTNPDRFVT 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GI+  ++   L QA+R R  IL  M
Sbjct: 478 LTDIEGLEDNYGDMDFKVAGTRDGITAIQLDMKLKGITFAVIEQTLAQARRAREVILEVM 537

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +++SR +L  + PR+  + I P +I  VIG GG+VIR I+E+T   ++I+DDGTV I
Sbjct: 538 NKAIAQSRAELSPYAPRMYKLKIDPGKIGAVIGPGGRVIRSIIEETKTTIDIEDDGTVII 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +S     + A  +I  +T   E + IY G+V ++M FGAFV     ++G+VHIS+L+  
Sbjct: 598 GASDGESAKKAIAIIEGMTKDIEPDSIYTGKVSRIMSFGAFVEILPGKEGMVHISELANR 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV K  DV+K GDTV VK+++ D +G+I LS++ +
Sbjct: 658 RVDKVEDVLKIGDTVTVKVIEIDSQGRINLSIRAL 692


>gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 707

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 300/694 (43%), Positives = 449/694 (64%), Gaps = 13/694 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V+ E  G P  +ETG  A+Q++GAV+   G+T VL   V     +   DF PLTV Y+E+
Sbjct: 8   VQTEVNGAPFIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREK 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGG+++RE +PT+ EIL++R IDR IRPLF K + N+  +    +  D +  P
Sbjct: 68  YYAYGKIPGGFVKREGKPTDREILVARNIDRPIRPLFPKGFYNDIVITAYTLSADDKYDP 127

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V+ +V ASAAL +S +PFEGP+ G +V  +NG++++NP   +  Q  +++ V+G++DA+
Sbjct: 128 DVLGIVGASAALHISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQADIEIVVAGSKDAI 187

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDF---SKL 240
           +MVE  A ++ E+ +L+A++FGH E K +IE   +L   C KE I   ID ++     KL
Sbjct: 188 VMVEGGAKEVPEEDILEAMMFGHQEIKKLIELQEELRLKCGKEKIQVAIDEEEIILKDKL 247

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +E   + IKE  +++    +K  R K I+ + ++             +   +  ++DI +
Sbjct: 248 KEFSYEKIKEAFKIT----DKKQRNKTINAIFEEAFKTLEIPEEKIKKASFI--YKDIVS 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            V+R  +L++ +R+DGR  E +R I  +VG+  R HGS++F RG TQA V VTLG+  + 
Sbjct: 302 NVMRDNILNEGIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEG 361

Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q  +S+ +G     FM+HYNF P +TGE     A SRREIGHG LA RA+ P++P   +F
Sbjct: 362 QIEESIEAGEVMKRFMLHYNFPPFSTGEAKPPRATSRREIGHGNLAERALEPLIPPEEEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS+I ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K  D F+ILSDI
Sbjct: 422 PYAIRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKAEDKFVILSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+T++QMD+K+ G+++ I+  ALQQA+ GR +IL+ M + +
Sbjct: 482 LGDEDHLGDMDFKVAGTRDGVTSIQMDIKVKGLTKEILEKALQQARDGRNYILDLMYQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R ++  + P V  + + PD+I  +IG  GK I+ I+E+T  K+++D +G VKI ++S
Sbjct: 542 PEPRKEVSPYAPTVTTLRVLPDKIPIIIGPAGKNIKKIIEETKVKIDLDPEGLVKIYATS 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A  MI  +    EV ++Y G+V +V D+GAFV     R  L+H+SQ++ ER+  
Sbjct: 602 KEAAEKAVSMINELILDVEVGEVYMGKVTRVEDYGAFVELLPGRLSLLHVSQITGERLKS 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             + +K GD + VK+ + DD+G+IK+S+K V +N
Sbjct: 662 AKEKIKVGDVLKVKVSEIDDQGRIKVSLKDVPEN 695


>gi|242278471|ref|YP_002990600.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121365|gb|ACS79061.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio salexigens
           DSM 2638]
          Length = 750

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 305/684 (44%), Positives = 444/684 (64%), Gaps = 17/684 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQERTYAVGKIP 74
           + LETGR+A Q++G VL   G TVVL T V   +  DG +DFFPLT NY ERTYA G+IP
Sbjct: 19  ITLETGRMANQTNGTVLIKSGGTVVLVTAVGMPA--DGPRDFFPLTCNYLERTYAAGRIP 76

Query: 75  GGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           GGY RRE  RP++ E L+SR++DR IRP+F K Y++E QVI  V+  D +++P V++M  
Sbjct: 77  GGYFRREVGRPSDRETLVSRLMDRPIRPMFPKAYRDEVQVIATVLSADTDTNPDVLAMTG 136

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVSGTQDAVLMVELE 191
           ASAAL +S LPF GPV  A+V  ++ ++VL P      +Q  L+L  + T+DAV+MVE  
Sbjct: 137 ASAALHISDLPFNGPVAAARVGLVDNEFVLYPTYKGVAEQSDLNLVFAATRDAVIMVEGS 196

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE- 250
           +  LSE+ + +A+ +GH +  P+ +    L +   +  + +   +    +EE+  ++ E 
Sbjct: 197 SQFLSENTIAEALEWGHEQMAPMFDLQDALREKVGRPKLEVSEPE---KDEEVITLVTEN 253

Query: 251 ---DLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
              DL  +  IP K  R     ++K   K M+     E     +  +     D++ K+VR
Sbjct: 254 FSADLDKALTIPGKLDRKAAKSEVKASAKAMIEEKFPEEPERAKA-VGDAMADLEKKIVR 312

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             ++++ VR+DGRD  TVR++S +V  L  THGS+LF RG+T A+ V TLG+  DEQ  +
Sbjct: 313 KRIVEQGVRIDGRDLTTVRNLSMEVSNLPMTHGSALFRRGETSALAVCTLGSTRDEQRFE 372

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L G     FM+HYNF P   GE   + APSRREIGHG LA RA+ PVLP+   FP+T+R
Sbjct: 373 TLIGEDTKRFMLHYNFPPYCVGEAKFLRAPSRREIGHGTLAERALRPVLPKAEDFPFTMR 432

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ +S+GSSSMATVCG++L+LMDAGVPIS PVAGIAMGL ++GD++ +L+DI GDED
Sbjct: 433 VVSEVMDSNGSSSMATVCGTTLSLMDAGVPISAPVAGIAMGLCQEGDEYFVLTDILGDED 492

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT+ GITA+QMD+KI GI  +++  AL QAK  R  IL++M + + E R 
Sbjct: 493 ALGDMDFKVAGTEEGITAIQMDIKISGIPADVLRRALAQAKDARQIILDDMKETMPEPRA 552

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L    P++E++ I P++IR++IG GGK I+ I  +T A ++I+D G V I + +L  ++
Sbjct: 553 ELSVNAPQMEVLQINPEKIRDLIGPGGKNIKAITAETSADIDIEDSGKVSIFAPTLESLK 612

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              EM++      E+ K Y G V K+++ GA V      +GL+HISQ+  ER+A+ +DVV
Sbjct: 613 KTVEMVQYYDQTAELGKNYVGTVKKILEIGAIVEILPGLEGLLHISQIDVERIAEVTDVV 672

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           + G  + VK+++    G+I+LS K
Sbjct: 673 QLGQEITVKVVEVQPNGRIRLSRK 696


>gi|306832712|ref|ZP_07465849.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304425168|gb|EFM28297.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 727

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 289/693 (41%), Positives = 439/693 (63%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E  +AGRPL +E G++A+Q++GA +  YGE+ +L+  V  + +  G DFFPL VNY+
Sbjct: 4   QTFETTFAGRPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP   + + SL +L V+GT+D
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLLELTVAGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++      +L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+      DL+ +  + EK  R    + +K+++++ +   ++     E     +  + E 
Sbjct: 243 EIIAAYNADLQKAVQVEEKKAREAATEAVKEQVIAVYEERYADDENYETIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 GETQIVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R QL    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++IDD+G V I S
Sbjct: 543 TIPAPRAQLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS++S  R 
Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEISWSRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           A  SDV++ G+ V VK++  DD+G++  SMK +
Sbjct: 663 ANVSDVLEVGEEVDVKVIKVDDKGRVDASMKAL 695


>gi|288904442|ref|YP_003429663.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
           UCN34]
 gi|306830475|ref|ZP_07463645.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977438|ref|YP_004287154.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731167|emb|CBI12715.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
           UCN34]
 gi|304427500|gb|EFM30602.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177366|emb|CBZ47410.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 727

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 289/693 (41%), Positives = 439/693 (63%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E  +AGRPL +E G++A+Q++GA +  YGE+ +L+  V  + +  G DFFPL VNY+
Sbjct: 4   QTFETTFAGRPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP   + + SL +L V+GT+D
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLLELTVAGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++      +L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+      DL+ +  + EK  R    + +K+++++ +   ++     E     +  + E 
Sbjct: 243 EIIAAYNADLQKAVQVEEKKAREAATEAVKEQVIAVYEERYADDENYETIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 GETQIVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R QL    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++IDD+G V I S
Sbjct: 543 TIPAPRAQLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS++S  R 
Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEISWSRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           A  SDV++ G+ V VK++  DD+G++  SMK +
Sbjct: 663 ANVSDVLEVGEEVDVKVIKVDDKGRVDASMKAL 695


>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
 gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
          Length = 714

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 307/690 (44%), Positives = 444/690 (64%), Gaps = 11/690 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E + AGRPL LE G+ A+Q+ G+VL  YG+TVVLAT        +  DF PLTV ++
Sbjct: 12  HRYETQVAGRPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEEPIEA-DFLPLTVEFE 70

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E QVI+ V+  D ++
Sbjct: 71  ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKN 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++   AASAALMLS +P+EGPV   +V  I GQ+VLNP L E  + +LDL V+G++D
Sbjct: 131 PPDILGPTAASAALMLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSESALDLVVAGSRD 190

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEE 242
           A+LMVE  A ++ E++++ A+ F H E +P+++   ++A+   K  +     +  S+ E+
Sbjct: 191 AILMVEAGAQEVDEEMLVQALEFAHREMQPILDLQEEIARALGKPKMAWTPPEALSEEEK 250

Query: 243 EMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVS--YFSSEHSSWNEGE---IVSVF 295
           E    +  +  +S  +    K  R + ++   + +V+      E  + +E +     S F
Sbjct: 251 EAFYRLAVERGLSAVLQTASKGERSRALEAFAEALVAEALPKGEDGTPDESKKPLYESAF 310

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            ++  K +R ++L++  R DGR  + +R I  +V +L RTHGS++F RG+TQ +  VTLG
Sbjct: 311 AEVVRKELRRLVLEEGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLG 370

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D L   +   F++HYNF P +TGEV R+   SRREIGHG LA+RA+  VLP 
Sbjct: 371 TGRDEQIIDDLGIDETEKFLVHYNFPPFSTGEVKRLRGVSRREIGHGNLAKRALKAVLPP 430

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVP+  PVAG+AMGLV +G+  +I
Sbjct: 431 EEAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGERAVI 490

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  R+ IL+ M
Sbjct: 491 LTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALMQAREARMKILDLM 550

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             VL   R +L  F PR+  + +P ++I  VIG GGK +R + E+ G +V+I++DGTV+I
Sbjct: 551 ESVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVRI 609

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS +   + A++ I  +T   +V +IY+G V K+  FGAFV      +GL+HISQ++  
Sbjct: 610 YSSDMEAAQKAKKRIEELTLEAKVGEIYEGTVTKITPFGAFVSLFPGTEGLLHISQIAPG 669

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RV +  D +K GD + VK+   D+RGKI L
Sbjct: 670 RVERVEDHLKVGDVIKVKVHRIDERGKIDL 699


>gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 741

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 313/693 (45%), Positives = 454/693 (65%), Gaps = 11/693 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E  GR L   TG +A+Q++GAV A YG+T VL T   +   ++  DFFPL V+Y+ER 
Sbjct: 8   EVEIGGRALVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERF 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+++RE +P+E+ IL +R++DRSIR LF +  KN+  V+  ++  D  + P 
Sbjct: 68  YAAGKIPGGFIKREGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSVDQTNPPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V+++ AASAAL +S +P++GPV   +V YI+G  V+NP  ++ Q S LDL V+G ++ + 
Sbjct: 128 VLAINAASAALAISDIPWDGPVGAVRVGYIDGSLVINPMEEDMQNSTLDLVVAGHKEGIT 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE  A ++ E+V++DA+     E + +++   K+ +   K    I +    +   E+ +
Sbjct: 188 MVEGGAGEVPEEVLVDALELAQQEIRRLVDFQLKMREEVGKPKCEIPA---PQEVPEIDE 244

Query: 247 MIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            IK D     +    I  K  R   I  +K+K+   F   +    EG + +       K 
Sbjct: 245 CIKTDHYGEIYEAVKIHAKKERSDAIKAIKEKVWEKFKDTYPE-QEGYVSNAVTKYVKKA 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-REDEQ 361
           +R+++LD+ +R DGR  + +R IS +V LL R HGS++F RG+TQA+VV TLG   EDEQ
Sbjct: 304 MRSLILDEGLRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQALVVTTLGMFGEDEQ 363

Query: 362 YVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L   +    FM+HYNF P + GEV  M  P RREIGHG LA RA+ P++P  +QFP
Sbjct: 364 ILDGLKLDEPPKRFMLHYNFPPFSVGEVRPMRGPGRREIGHGALAERAVKPLIPDESQFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VS+I ES+GSSSMA+VCG+S++LMDAGVPI+K VAGIAMGL+K+GD + IL+DI 
Sbjct: 424 YIIRVVSDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAMGLIKEGDKYAILTDIQ 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  G+TA+QMD K GGI+  I+V AL QAKRGRL IL+ M K + 
Sbjct: 484 GLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILVQALDQAKRGRLQILDIMEKAIG 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ PR+  M I PD+IR+VIG GGK IR IV++TG K++I DDG V IA+SS 
Sbjct: 544 RPRGELSQYAPRIYTMNIDPDKIRDVIGPGGKTIRSIVQKTGVKIDIADDGVVHIAASSE 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +    A  +I+S+T   E  ++Y G+V ++M+FGAF+     ++GL+HIS++S+  V K 
Sbjct: 604 SAANEAMSIIKSLTKDVEPGEVYIGKVTRLMNFGAFIELLPGKEGLLHISEVSSSHVPKI 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D+ K GD V V + + D+ G++ LS K + +N
Sbjct: 664 EDIFKVGDRVLVVVKEIDELGRVNLSRKRIMEN 696


>gi|15673837|ref|NP_268012.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|81537531|sp|Q9CEI6|PNP_LACLA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|12724886|gb|AAK05953.1|AE006415_8 polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 773

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/695 (42%), Positives = 443/695 (63%), Gaps = 11/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      + +  G DFFPL VNY+
Sbjct: 4   ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 62  EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S  V +M  +S AL +S +PF+ P+ G +V YI+G+Y++NP + E + S L+L V+G  +
Sbjct: 122 SGRVAAMFGSSLALAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNIN 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++     + L+ 
Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297
           E+      DL+ +  I EK  R      +K+ ++S +S+++ +     I+      + E 
Sbjct: 242 EVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355
           ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL 
Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLA 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP 
Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +
Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +
Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   I
Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS  A I+ A+E+I  +    +V +IY  +VV++  FGAFV+  G +D +VHIS+++  
Sbjct: 602 FSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R     DVVK GDTV VK++  DD+G++  SM+ +
Sbjct: 662 RTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRAL 696


>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB8]
 gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
          Length = 713

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 305/691 (44%), Positives = 446/691 (64%), Gaps = 13/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E+  AGRPL LETG+ A+Q+ G+VL  Y +TVVLAT     +  +  DF PLTV ++
Sbjct: 11  HRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEA-DFLPLTVEFE 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E Q+I+ V+  D ++
Sbjct: 70  ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKN 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++  +AASAALMLS +P+EGP+   +V  I G +VLNP L E ++  LDL V+G+++
Sbjct: 130 PPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAGSKE 189

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           A+LMVE EA ++ E+ ++ A+ F H E +P++E    +A+  AK P +  +   S  EEE
Sbjct: 190 AILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAK-PKMAWTPPESLPEEE 248

Query: 244 MSQM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVS--YFSSEHSSWNEGE---IVSV 294
              +    ++  L        K  R + + +  +++++      E  + +EG+     S 
Sbjct: 249 KEALYRLALERGLSQVLQTASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPLYESA 308

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F+++  + +R ++L++  R DGR  + +R I  +V +L R HGS++F RG+TQ +  VTL
Sbjct: 309 FDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTL 368

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  DEQ +D L   +   F++HYNF P +TGEV R+   SRRE+GHG LA+RA+  V+P
Sbjct: 369 GTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +   FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVPI  PVAG+AMGLV + +  +
Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAV 488

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  RL IL+ 
Sbjct: 489 ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M  VL   R +L  F PR+  + +P ++I  VIG GGK +R + E+ G +V+I++DGTV+
Sbjct: 549 MEAVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVR 607

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS L     A++ I  +T   +V +IY+G V ++  FGAF+      +GL+HISQ++ 
Sbjct: 608 IYSSDLQAALEAKKRIEDLTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAP 667

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            RVA+  D +K GD + VK+   D+RGKI L
Sbjct: 668 GRVARVEDHLKVGDVIKVKVHRIDERGKIDL 698


>gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
 gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
          Length = 741

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 308/702 (43%), Positives = 444/702 (63%), Gaps = 22/702 (3%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  IE +GR   ++ GR+A Q+   VLA YGETVVL     + +L++G DFFPLTV+Y+E
Sbjct: 8   TRTIEISGRTFSVDIGRVAGQASAGVLARYGETVVLVAATRE-ALREGLDFFPLTVDYEE 66

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVG+IPG +++RE RP E  IL +R+IDRSIRPLF + +  +  V+  VM  D + S
Sbjct: 67  RHYAVGRIPGSFMKREGRPGEKAILAARLIDRSIRPLFPRNFTQDVHVVALVMSVDQDCS 126

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +++ AS AL LS +PF GPV    +  ++GQ V+NP L++D+ S L L V+GT++A
Sbjct: 127 PAITAILGASVALTLSDIPFAGPVGAVIMGMVDGQLVVNPTLEQDEKSDLHLTVAGTREA 186

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           + MVE  A ++SE+++++A+   H E + + E + ++      EP+ +          E 
Sbjct: 187 INMVEAGAKEVSEEIIVEALTKAHAEIQRIAEWVGEI--RAEVEPLGLAHPKIEVPANEP 244

Query: 245 SQMIKEDLRVSCFIPEKYV--RCKQIDDLKKKMVSYFSS----------EHSSWNEGEIV 292
              + E +R + +   +     CK     KK    +             E+    E  + 
Sbjct: 245 GPELVEAVRSAGYEKMRAAVHHCKNERLDKKSADRHLEGTKAEIINAVLENFPEEEQRLK 304

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S+ + ++ + VR ++L +KVR+DGR  + +RDIS +V +L RTHGS LF RG TQ + V+
Sbjct: 305 SLVDKLEKEAVRELVLKEKVRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVL 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   DEQ +D L   +   FM HYNF   +TGE   + +  RREIGHG LA RA+  V
Sbjct: 365 TLGAVRDEQILDGLDTQETKRFMHHYNFPSFSTGEARPIRSAGRREIGHGALAGRALEAV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+RIVSE+  S+GS+SMA+VCGS LALMDAGVPI  PVAGIAMGL+K+GD+
Sbjct: 425 LPGEDVFPYTIRIVSEVLSSNGSTSMASVCGSCLALMDAGVPIKAPVAGIAMGLIKEGDE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +L+DI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI+  I+  A+ QA+  RL+IL
Sbjct: 485 VAVLTDIQGTEDHLGDMDFKVAGTEQGVTALQMDIKIAGITPEILAQAMAQAREARLYIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           +   +V+   R ++    PR+    I P++IR++IG GGK+IR I E TG  ++++DDG 
Sbjct: 545 DRYKEVIPGPRPEISPRAPRIIHTTIDPEKIRDIIGPGGKIIRKITETTGVDIDVEDDGR 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGL 646
           V I +      + A E+I+++T   +V ++Y G+VVK+MDFG FV           +DGL
Sbjct: 605 VFITAPDPEGGKKALEIIKTLTAEVKVGEVYLGRVVKIMDFGCFVEVIPGVLGLPGKDGL 664

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           VHIS L+  RV K  DVV+EGD + VK + FD++G++KLS K
Sbjct: 665 VHISHLAHNRVRKVEDVVREGDQILVKAIGFDNQGRLKLSKK 706


>gi|218961755|ref|YP_001741530.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730412|emb|CAO81324.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 743

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 300/706 (42%), Positives = 448/706 (63%), Gaps = 19/706 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F++   E ++ GR L +ETG++A+Q++G+V   YGET VL T    +   + QDFFPLTV
Sbjct: 4   FNITRRETDFCGRKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTV 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+ YA GKIPGG+ +RES+P+ +  L++R+IDRSIRPLF + ++N+  +++ V+  D
Sbjct: 64  DYIEKMYAAGKIPGGFFKRESKPSTDATLMARVIDRSIRPLFPEGFRNQVHIVVTVLSFD 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFVS 179
             + P  + +  AS AL +S +PF GP+    V YI+ Q+V+NP  +E   Q  L+L V+
Sbjct: 124 GVTDPSTMGVFGASLALSISDIPFNGPIASVTVGYIDNQFVVNPHFNEIETQSKLNLTVA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDS--- 234
           G++ +++M+E  A++LSE+++LDA+  GH E + +          C KE +  V+DS   
Sbjct: 184 GSESSIVMIESAASELSEEMMLDAVFTGHKEIQKLCALQQDFISACGKEKVEVVLDSIPE 243

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGE 290
           +  +K+E      I E    +  I  K  R    D  + +MV  FS +     S W E E
Sbjct: 244 EIMNKVENAFGAKIAE----ATVIFGKQERQDAFDAAEAEMVEMFSQQEDTDLSPWEETE 299

Query: 291 --IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
                 F+++  + VR  +L K+ R+DGR ++ +R+I+ ++ +L R HGS+LF RG+TQ+
Sbjct: 300 RYYKMAFDELIRRYVRDSILRKQHRVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQS 359

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  +TLG   DEQ +D L    +  F +HYNF P + GEV R+G   RRE+GHG LA RA
Sbjct: 360 LGTLTLGGGTDEQVIDGLETEYKKSFYLHYNFPPYSVGEVGRIGPTGRRELGHGNLAERA 419

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  VLP    FPYT+RIV++  ES+GSSSMA++C   LALM  GVPI  PVAGIAMGL+ 
Sbjct: 420 LKAVLPDKDSFPYTIRIVADTLESNGSSSMASICSGCLALMAGGVPIKAPVAGIAMGLIM 479

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G+D+++L+DI G EDHLG MDFK AGT  GITAMQMD+KI GI+  IM +AL +AK  R
Sbjct: 480 EGEDYVVLTDIMGLEDHLGDMDFKCAGTREGITAMQMDIKISGITREIMQIALNKAKSAR 539

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL+ M++ ++E R +L  + PR+E   +P D+I  +IG GGK+I+ I+E+   +++I 
Sbjct: 540 FKILDIMAECIAEPRSELAPWAPRIESFKVPIDKIGEIIGPGGKMIKSIIEECQVQIDIQ 599

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLV 647
           DDGTV+I S     I  A+ +I+ I   P    +++GQV ++  +G FV   G  ++G+V
Sbjct: 600 DDGTVRILSPDKESINKAKSIIKGIAVDPVAGDMFEGQVTRIEPYGIFVKILGGTKEGMV 659

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           HIS++ T R+    D+VK GD V V+ L   D+GK+ LSMK V  N
Sbjct: 660 HISEMYTGRINHPLDMVKLGDKVQVRTLGM-DKGKLSLSMKGVAGN 704


>gi|226356846|ref|YP_002786586.1| polynucleotide phosphorylase/polyadenylase [Deinococcus deserti
           VCD115]
 gi|257096684|sp|C1CXB5|PNP_DEIDV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226318836|gb|ACO46832.1| putative polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) [Deinococcus deserti VCD115]
          Length = 721

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 306/682 (44%), Positives = 438/682 (64%), Gaps = 10/682 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETGR+A+   G+V   YG+T++L T    R  K   DF PLTV ++ER YAVG
Sbjct: 11  GGRELSIETGRLAKLVSGSVTLRYGDTMLLVTA-QAREEKSPLDFLPLTVEFEERHYAVG 69

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPG + RRE RP E  IL +R+ DR +RPLF K Y++ETQVII V+  D +++P V+  
Sbjct: 70  KIPGSFHRREGRPGEKAILSARITDRQLRPLFPKGYRHETQVIITVLSADQQNAPDVLGP 129

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           + ASAAL +S +P+ GP    +V  ++GQ+++NP  D+  +  +DL V+GT+DAV+MVE 
Sbjct: 130 IGASAALSISDIPWGGPTACVRVGQVDGQFIVNPTADQLTRSRMDLVVAGTRDAVMMVEA 189

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK-LEEEMSQMI 248
            A  +SE+ ++ AI F H E + VI+ I ++     +E    +   D ++ L  E+++  
Sbjct: 190 GAQTVSEEDLVSAIEFAHAEMQGVIDLIERMRAEVGQEKFNFLAEGDLTQDLVPELAEKA 249

Query: 249 KED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV----V 303
           +   +R +    +K  R  +   ++  +++ +  + ++      ++  +D  AKV    +
Sbjct: 250 RAGGIRDALLTTKKKERSARTKAVRDAIIAGYVPDPNAEGAAARIASLKDAYAKVEKQEL 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L++ +R DGR+   VR I  +   L R HGS++F RG+TQ + V TLGT  DE  V
Sbjct: 310 RRLILEEDLRADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGTERDEILV 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+    + FM+HYNF P +TGEV RMG  SRREIGHG LA+RAI  VLP   +FPY +
Sbjct: 370 DDLTTEDNDKFMLHYNFPPYSTGEVKRMGGQSRREIGHGHLAKRAIRAVLPSFEEFPYVI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V E+ ES+GSSSMATVC   LALMDAGVPI  PVAG+AMGLV +GD + +L+DI G E
Sbjct: 430 RLVGEVLESNGSSSMATVCAGVLALMDAGVPIKAPVAGVAMGLVMEGDKYRVLTDILGLE 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKV GT  G+TA+QMD+K+GGI+  +M  AL QA+ GRLHIL +M++VLS  R
Sbjct: 490 DALGDMDFKVCGTAEGVTALQMDIKVGGITPQVMREALAQAREGRLHILGKMAEVLSSPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    PR+  + I P+ I  VIG GGK +R + E  GA+V I++DGT+++ S+  A  
Sbjct: 550 PELSPTAPRIISIKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTIRVFSADGAAA 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA R  I  +T   +V + Y+G VVK   FGAFV+    +DG++HISQ+S ER++   D 
Sbjct: 609 EAVRARIAGLTKEAKVGEEYEGTVVKTAPFGAFVNLYAGQDGMLHISQISEERLSAVEDA 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685
           +  GD + VK+   DDRGKI L
Sbjct: 669 LNVGDKLRVKIAGIDDRGKIDL 690


>gi|326407346|gb|ADZ64417.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 773

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/695 (42%), Positives = 443/695 (63%), Gaps = 11/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      + +  G+ FFPL VNY+
Sbjct: 4   ETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGK-MATGE-FFPLQVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 62  EKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S  V +M  +S AL +S +PF+ P+ G +V YI+G+Y++NP + E + S L+L V+G  +
Sbjct: 122 SGRVAAMFGSSLALAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNIN 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++     + L+ 
Sbjct: 182 AINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKA 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFED 297
           E+      DL+ +  I EK  R      +K+ ++S +S+++ +     I+      + E 
Sbjct: 242 EVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILEG 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLG 355
           ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL 
Sbjct: 302 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLA 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP 
Sbjct: 362 PMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +
Sbjct: 422 LEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +
Sbjct: 482 LTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDVI 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   I
Sbjct: 542 EATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCSI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS  A I+ A+E+I  +    +V +IY  +VV++  FGAFV+  G +D +VHIS+++  
Sbjct: 602 FSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAWA 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R     DVVK GDTV VK++  DD+G++  SM+ +
Sbjct: 662 RTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRAL 696


>gi|156743526|ref|YP_001433655.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus
           castenholzii DSM 13941]
 gi|257096706|sp|A7NPZ1|PNP_ROSCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|156234854|gb|ABU59637.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus castenholzii
           DSM 13941]
          Length = 746

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 319/697 (45%), Positives = 461/697 (66%), Gaps = 12/697 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+V ++ AGR L LETGR A Q++GAV+  YG+T++LAT V  +  +   DFFPLTV+Y
Sbjct: 6   IHSVSMDLAGRTLTLETGRFAEQANGAVVVRYGDTMLLATAVASKEPRTDTDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPG + +RE +PTE  IL +R+ DR +RPLF + Y+NE Q+I+     D+ 
Sbjct: 66  EEKMYAAGKIPGSFFKREGKPTEGAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMV 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P  +S++AASAAL +S +PF GPV   QV YI+G   +NP +     S LDL V+GT+
Sbjct: 126 NDPAPLSIIAASAALAISDIPFLGPVGAVQVGYIDGALQINPPMPNMANSDLDLVVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKL 240
           +AVLMVE  AN+L E+V+L+A+I GH  CK + +  ++L K+    K+  V    D S L
Sbjct: 186 EAVLMVEAGANELPEEVMLEAVIQGHQVCKQICDLQNELVKLAGRPKKEFVPPPVDTS-L 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVSVFE 296
           EE + Q +   L  +     K VR  Q + LK++++++F++    E        + + FE
Sbjct: 245 EEAIQQWLGNRLYEAITDANKMVRDAQTEALKREVIAHFTADEPEEELEARTAAVSAAFE 304

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I  + VR ++L++  R+DGR  + +R IS +VGL+ R HGS LF RG TQ + + TLG+
Sbjct: 305 NILYEEVRRMILERGERVDGRGPKDIRPISVEVGLIPRVHGSGLFTRGQTQVLTLATLGS 364

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             +EQ +D L       ++ HYNF P +TGE+ R+G+P RR+IGHG LA R++  VLP  
Sbjct: 365 PAEEQRLDDLGIETAKRYIHHYNFPPFSTGEIRRLGSPRRRDIGHGALAERSLLAVLPPK 424

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFI 474
            +FPYT+R+VSE   S+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGL+  KDG  + 
Sbjct: 425 EEFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIRAPVAGIAMGLITGKDG-RWR 483

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDHLG MDFKVAGT  GIT +QMD+K  GI+  IM  A  QA+ GRLH+L +
Sbjct: 484 VLTDIQGIEDHLGDMDFKVAGTAKGITGLQMDIKTTGITYEIMREAFAQAREGRLHVLEK 543

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+ V+SE R +L  + PR+  + I P++I  +IG GGK IR I E TGA+++I++DG V 
Sbjct: 544 MNAVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTIRSITEATGAQIDIEEDGRVY 603

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I+++  A  + A  M+ ++T   +V  I+ G+VV++M FGAFV+    +DG+VH+S+L  
Sbjct: 604 ISTADAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSELDV 663

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            RV    DV+K GD + V ++  +   GK+ LS + +
Sbjct: 664 GRVENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRAL 700


>gi|162447666|ref|YP_001620798.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
           laidlawii PG-8A]
 gi|187470930|sp|A9NGE2|PNP_ACHLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161985773|gb|ABX81422.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
           laidlawii PG-8A]
          Length = 715

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 322/711 (45%), Positives = 451/711 (63%), Gaps = 35/711 (4%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQER 66
           E   AG+PL++E G IA+Q++GA +  YG+TVVL+T V     K GQ DFFPL V Y E+
Sbjct: 7   ETTLAGKPLRVEVGEIAKQANGAAMIYYGDTVVLSTAVA--KAKVGQTDFFPLMVIYAEK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGG+ RRE RP+E E L SR+IDR +RPLF   Y+NE QV+  V+  D E+S 
Sbjct: 65  QYAAGKIPGGFFRREGRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSDPEASS 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            + +M+ +S AL +S +PF GP+ GA V  I+GQ+VLNP  ++ +   +DL V+GT+DA+
Sbjct: 125 QMAAMLGSSIALEISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLIVAGTKDAI 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVI---EAISKLAKMCAKEPIVIDSKDFSKLEE 242
            MVE  A Q+SE+V+L+AI+FGH   K +    E I K   +   EP ++ S + +  +E
Sbjct: 185 NMVEAGAKQVSEEVMLEAILFGHEAIKELCAFQETIKKAFGVEKVEPELL-SLNQAIFDE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW------------NEGE 290
             +   KE ++    + +K  R   ID +K ++V++F  + + W             + E
Sbjct: 244 VFAYKGKELVKAVSLV-DKQERYDVIDAIKDEVVAHFE-QRNFWMTVDGKEVLDADQKKE 301

Query: 291 IVS----VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +++      + I  K VR ++ + KVR DGR  + +R +++ V LL RTHGS+LF RG T
Sbjct: 302 LMNQVKVSLDRIVTKEVRRLITEDKVRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQT 361

Query: 347 QAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           QA+ +VTLG+  + Q +D L   T    FM+HYNF P + GE  R GAP RREIGHG L 
Sbjct: 362 QALGIVTLGSLNENQIIDGLEQETVTKRFMLHYNFPPFSVGETGRYGAPGRREIGHGALG 421

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+  VLP   +FPY +R+VSEITES+GSSS AT+C  S+ALM AGVPI  PVAGIAMG
Sbjct: 422 ERALLQVLPSEDEFPYAIRVVSEITESNGSSSQATICVGSMALMAAGVPIKAPVAGIAMG 481

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           L+ DG+ + ILSDI G EDH G MDFKVAGT  GITA+QMD+KI GI+  IM  AL+QA+
Sbjct: 482 LIMDGEHYSILSDIQGMEDHEGDMDFKVAGTKDGITALQMDIKIQGITTEIMKEALEQAR 541

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAK 584
           +GRLHIL+ M+ V+SE+R +L  F P+V+++ I PD+IR+VIG GGK+I  I+E     K
Sbjct: 542 KGRLHILSHMNTVISETRTELSAFAPKVKMIRINPDKIRDVIGAGGKIITQIIEDHNNVK 601

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDF------GAFV 637
           ++I+ DG V I  +  A +      I S+    +V ++Y+ +V + +MD       G F 
Sbjct: 602 IDIEQDGRVFIMHTDSAWLNKTAAYIESLVREAKVGELYEAKVTRLLMDKDGKKIQGVFA 661

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
                 +GLVHIS+   ER       VK GD + VK++  D+RG++ LS K
Sbjct: 662 EIFPGTEGLVHISKWEKERTESLDGKVKVGDQILVKVVKIDERGRVDLSRK 712


>gi|320547742|ref|ZP_08042026.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
           ATCC 9812]
 gi|320447502|gb|EFW88261.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
           ATCC 9812]
          Length = 723

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/693 (41%), Positives = 439/693 (63%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E  +AGRPL +E G++A+Q++GA +  YGE+ VL+  V  + +  G DFFPL VNY+
Sbjct: 4   QTFETTFAGRPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSEEQKEKSLLELTVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++      +L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVQELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+      DL+ +  + EK  R    + +K+++ + +   ++     E     +  + E 
Sbjct: 243 EIIAAYNADLQKAVQVEEKKAREAATEAVKEEVTAVYEERYADDENYETIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 GETQIVDGLGAEYKKRFLHHYNFPQFSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  L    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++ID++G V I S
Sbjct: 543 TIPAPRTHLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDEEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A I+ A+E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R 
Sbjct: 603 SDQAAIDRAKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDTTDALVHISEIAWTRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           A  SDV++ GD V VK++  DD+G++  SMK +
Sbjct: 663 ANVSDVLEVGDEVDVKVIKVDDKGRVDASMKAL 695


>gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
 gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
          Length = 825

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/697 (42%), Positives = 448/697 (64%), Gaps = 17/697 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T ++ +AG+PL +E G++A+Q++GA +  YG++ VL      + +    DFFPL VNY+E
Sbjct: 5   TFQMTFAGKPLVVEIGQVAKQANGAAVVHYGDSTVLCAATMSKKMAR-TDFFPLQVNYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GK PGG+++RE RP+ +  L +R+IDR IRPLF++ ++NE QVI  V+ +D ++S
Sbjct: 64  KMYAAGKFPGGFMKREGRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPDAS 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             + +M A+S AL +S +PFEGP+ G QV Y++G++++NP   + + S LDL V+GT+DA
Sbjct: 124 APMAAMFASSLALCISDIPFEGPIAGVQVAYLDGEFIINPTAQQKEASNLDLTVAGTKDA 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSK 239
           + MVE  A +LSED++L+A++ GH   + +I    E ++ L K  A+ E + +DS+    
Sbjct: 184 INMVESGAQELSEDIMLEALLKGHQAIQELIAFQEEIVATLGKEKAEVEFLQVDSQ---- 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSV 294
           L +E+      DL+ +  + EK  R +    +K ++++ +   ++   E E     +   
Sbjct: 240 LRDEIVATYTSDLQKAVQVQEKLAREEATQAVKDQVLASYEERYADDEELERILRDVSES 299

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E+++   VR ++ + K+R DGR  + +R + A+V  L + HGS LF RG TQA+ V+TL
Sbjct: 300 LEEMEHAEVRRLITEDKIRPDGRQVDEIRPLEAEVDFLPQVHGSGLFTRGQTQALSVLTL 359

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + + VD L    R  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP
Sbjct: 360 APMSESKIVDGLDPEYRKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLP 419

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ 
Sbjct: 420 SFEDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ 
Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPEILKEALAQAKKARYEILDL 539

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           + + +   R +L    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++ID++G V+
Sbjct: 540 IEQTIPAPRPELAPTAPKIDTIKIALDKIKVVIGKGGETIDKIIEETGVKIDIDEEGNVQ 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIY-KGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I S     I+ A+E+I ++    ++ ++Y + +VV++  FGAFV+     D LVHIS+L+
Sbjct: 600 IYSPDQDAIDRAKEIIANLVREAKIGEVYPEAEVVRIESFGAFVNLFDKTDALVHISELA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ER  +  DVVK GD V VK+L  DD+G++  S+K +
Sbjct: 660 WERTNRVEDVVKLGDKVAVKVLKIDDKGRVNASIKAL 696


>gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 745

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/697 (42%), Positives = 438/697 (62%), Gaps = 14/697 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   +    AG  ++LETGR A Q+DGAVL   G+TVVL T V  ++L + + FFPLT 
Sbjct: 5   FEPIRISTNVAGIDIELETGRFANQADGAVLVRSGDTVVLVTAVT-QALPEDKGFFPLTC 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           NYQE +YA G+IPGGY RRE  RP++ E L+SR+IDR +RP F K +++E Q+I  V+  
Sbjct: 64  NYQEMSYAAGRIPGGYFRREIGRPSDRETLVSRLIDRPLRPSFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178
           D   +P V+++  ASAAL +S +PF GP+   +V Y+NG +V  P      +  SL++ +
Sbjct: 124 DKNVNPDVLAVTGASAALHISKIPFNGPLASTRVGYVNGGFVAFPTYQNITELSSLNMVL 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI----DS 234
           + +++AV+MVE  A  +SED++ +AI FGH    P+ +   +L +   +  I      + 
Sbjct: 184 AASRNAVVMVEGGAEFMSEDLLAEAIAFGHKMIIPLFDLQDELREKIGRPKIAFTPPAEK 243

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEI 291
            +F  +  E+    K     +  I  K  R K   ++K +++   S    E++   + ++
Sbjct: 244 TEFMNIVRELG---KAKFDAALSIAAKLERKKARSEVKDEVLRILSERDPENADKIKKDL 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
               E ++ +++R  +  + VR+DGRD  TVR +S +VGLL +THGS+LF RG+T ++ +
Sbjct: 301 PEAMEALEKEIMRERIKSRGVRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAI 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG+  DEQ +++L+G     FM+HYNF P    E   +  PSRREIGHG LA RAI P
Sbjct: 361 ATLGSSRDEQRIETLTGEITKGFMLHYNFPPFCVNEARFLRGPSRREIGHGNLAERAIKP 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FP+T+R+V+E  ES+GSSSMA VCG  LALMDAGVPI  PVAGIAMGL K  D
Sbjct: 421 VLPADGEFPFTIRVVAETMESNGSSSMAAVCGGCLALMDAGVPIKAPVAGIAMGLAKVDD 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+ +L+DI GDED +G MDFKVAGT  G+TA+QMD+KI GI + ++  AL QAK  R+ I
Sbjct: 481 DYFVLTDILGDEDAMGDMDFKVAGTAEGVTAIQMDIKIAGIPQEVLARALAQAKEARMLI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM+K+L   R  L E  P+ +++ I P++IR VIG GGK I+ I   TGA ++I+D G
Sbjct: 541 LEEMAKILPAPRTDLSELAPQYDVVQINPEKIREVIGPGGKNIKAITAATGADIDIEDSG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            ++I + +   +  AREM+      P+V K Y G V K++D GA V      +GL+H+SQ
Sbjct: 601 RIQIFAPTSESMVKAREMVLYYDQTPDVGKNYVGTVTKIIDCGAIVQIMPGVEGLLHVSQ 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           L  +RV   +D++  G  V VK+++    G+++LS K
Sbjct: 661 LDVDRVENVADLLSTGQEVTVKVVEVQPNGRVRLSRK 697


>gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 743

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 309/703 (43%), Positives = 448/703 (63%), Gaps = 21/703 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F    V  +  G+ + +E+GR+A Q+ G V    G TVVL TV   + L+  + FFPLT
Sbjct: 5   IFTPTRVTCQVGGKEIIIESGRMANQAHGEVWIQCGGTVVLVTVC-SQPLEFDKGFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L++R+IDR IRPLF K    + QV+ +V+ 
Sbjct: 64  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVARLIDRPIRPLFPKGLNEDVQVLASVIS 123

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+   V+++  ASAALMLS LPFEGPV G ++  + GQ+VLNP  ++  Q  L++  
Sbjct: 124 ADQENESDVLALTGASAALMLSPLPFEGPVAGGRIARVGGQFVLNPTFEQQAQSDLNIVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           + + DA+ MVE +A  +SEDV+++A+ +G  +  P++E   KL ++C K  +     +D 
Sbjct: 184 AASGDALTMVEGDARFISEDVIIEALEWGRLQILPLVEIQHKLRELCGKPKMNFTPHQDD 243

Query: 238 SKL-----EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-- 290
             L     E  ++  ++E LRV    PEK  R      +K K++    ++  +W E E  
Sbjct: 244 EALVACVHELALANGMEEALRV----PEKMARKDARKAVKDKVMETLKAD-PAWAENEAA 298

Query: 291 ---IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              +  +   ++ K+VR  ++++  R+DGRD+ TVR I  Q GLL R HGS+LF RG+T+
Sbjct: 299 LKAVSDILGGLEKKLVRARIVNEGTRIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETK 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++VV TLG+  DEQ +DSL+G     FM+HYNF P + GEV  +   SRREIGHG LA +
Sbjct: 359 SLVVATLGSSTDEQRMDSLTGDVTKRFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEK 417

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           ++ PVLP  A FP+TLR+V+E  ES+GSSSMA VCG SL+LMDAGVP+S PVAG+AMGL+
Sbjct: 418 SLRPVLPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLI 477

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+G+ FI+L+DI GDED LG MDFK+AGT  G+T +QMD+KI G++  IM  A+QQA+ G
Sbjct: 478 KEGEKFIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTEIMRTAMQQAREG 537

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RLHIL EM+K ++  R +L  + P+   + + PD IR +IG GGK I+ I   TGA V+I
Sbjct: 538 RLHILEEMAKAIASPRKELSRYAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDI 597

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D G V I + +   +E AREM+      P++ K Y  +V K+M+ GA V      + LV
Sbjct: 598 EDSGRVSIFAPTAEALEKAREMVSYYDQRPDLGKNYNAKVRKIMEIGAIVEVLPNVEALV 657

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           H+SQL   RV +  DV + G+ + VK+++ +   +I+ S K V
Sbjct: 658 HVSQLDVNRVEQPGDVARLGEDMLVKVIEING-DRIRASRKAV 699


>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB27]
 gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
 gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
          Length = 713

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 304/691 (43%), Positives = 445/691 (64%), Gaps = 13/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E+  AGRPL LETG+ A+Q+ G+VL  Y +TVVLAT     +  +  DF PLTV ++
Sbjct: 11  HRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEA-DFLPLTVEFE 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E Q+I+ V+  D ++
Sbjct: 70  ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKN 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++  +AASAALMLS +P+EGP+   +V  I G +VLNP L E ++  LDL V+G+++
Sbjct: 130 PPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAGSKE 189

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           A+LMVE EA ++ E+ ++ A+ F H E +P++E    +A+  AK P +  +   S  EEE
Sbjct: 190 AILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAK-PKMAWTPPESLPEEE 248

Query: 244 MSQM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVS--YFSSEHSSWNEGE---IVSV 294
              +    ++  L        K  R + + +  +++++      E  + +EG+     S 
Sbjct: 249 KEALYRLALERGLSQVLQTASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPLYESA 308

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F+++  + +R ++L++  R DGR  + +R I  +V +L R HGS++F RG+TQ +  VTL
Sbjct: 309 FDEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTL 368

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  DEQ +D L   +   F++HYNF P +TGEV R+   SRRE+GHG LA+RA+  V+P
Sbjct: 369 GTGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +   FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVPI  PVAG+AMGLV + +  +
Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAV 488

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  RL IL+ 
Sbjct: 489 ILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M  VL   R +L  F PR+  + +P ++I  VIG GGK +R + E+ G +V+I++DGTV+
Sbjct: 549 METVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVR 607

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS L     A++ I  +T   +V +IY+G V ++  FGAF+      +GL+HISQ++ 
Sbjct: 608 IYSSDLNAALEAKKRIEDLTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAP 667

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            RV +  D +K GD + VK+   D+RGKI L
Sbjct: 668 GRVERVEDHLKVGDVIKVKVHRIDERGKIDL 698


>gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 703

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/684 (42%), Positives = 449/684 (65%), Gaps = 5/684 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G P  +ETG  A+Q++GAV+   G+T VL   V     +   DF PLTV Y+E+ YA GK
Sbjct: 12  GAPYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE +P+E EIL++R IDR IRPLF K + N+  +    +  D +  P V+ +V
Sbjct: 72  IPGGFVKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSADDQYDPDVLGIV 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
            ASAAL +S +PFEGP+ G +V  ++GQ+++NP   +   S L++ V+G++DA++MVE  
Sbjct: 132 GASAALHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAGSKDAIVMVEGG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           A ++ E+V+L+A++FGH E K +IE   +L AK   ++  +   ++   L+E+  ++   
Sbjct: 192 AKEVPEEVILEAMLFGHQEIKKLIELQEELRAKYGKEKIEIPIDEEEILLKEKFKELAYV 251

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
            ++ +  I +K  R KQI+ + +++ +          +   V  ++D+ + V+R ++L +
Sbjct: 252 RIKEAFNISDKKERNKQINAIFEEIKTTLEIPEEKVKKASFV--YKDVVSNVMRDLVLYE 309

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGT 369
            +R+DGR  E +R I  +VG+  R HGS++F RG TQA V VTLG+  + Q  +S+ +G 
Sbjct: 310 NIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGE 369

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
               FM+HYNF P +TGE       SRREIGHG LA RA+ P++P   +FPY +R+VS+I
Sbjct: 370 TLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYVIRVVSDI 429

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K  D F++LSDI GDEDHLG M
Sbjct: 430 LESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGDEDHLGDM 489

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  G+T++QMD+K+ G++  I+  AL+QA+ GR +IL+ M + + E R +L  +
Sbjct: 490 DFKVAGTRDGVTSIQMDIKVKGLTREILQKALEQAREGRNYILDLMYQAIPEPRKELSPY 549

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P V  + + P++I  +IG  GK I+ I+E+TG K+++D  G VKI ++S    E A +M
Sbjct: 550 APTVTTLRVLPEKISVIIGPAGKNIKKIIEETGVKIDLDPTGLVKIYATSKIAAEKAIDM 609

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +    E+ ++Y G+V +V D+GAFV     +  L+H+SQ+S+ER+    DVVK GD 
Sbjct: 610 INQLIMDIELGEVYLGKVTRVEDYGAFVELMPGKLSLLHVSQISSERLKSAKDVVKVGDV 669

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693
           + VK+ + DD+G+IK+S+K V +N
Sbjct: 670 LKVKVSEIDDQGRIKVSLKDVPEN 693


>gi|15834850|ref|NP_296609.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Nigg]
 gi|270285016|ref|ZP_06194410.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Nigg]
 gi|270289041|ref|ZP_06195343.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Weiss]
 gi|301336414|ref|ZP_07224616.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           MopnTet14]
 gi|81548983|sp|Q9PL77|PNP_CHLMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|7190270|gb|AAF39102.1| polyribonucleotide nucleotidyltransferase [Chlamydia muridarum
           Nigg]
          Length = 693

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 309/688 (44%), Positives = 439/688 (63%), Gaps = 25/688 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           + L  ETG+IARQ++GAVL    ET V ++     SL +  DF P  V+YQE+  + GK 
Sbjct: 14  KTLIFETGKIARQANGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRVDYQEKFSSAGKT 72

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
            GG+L+RE RP+E EILISR+IDRS+RP F      + QV+  V  +D ++ P  +++  
Sbjct: 73  SGGFLKREGRPSEKEILISRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAICG 132

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           ASAAL +S +P    V G +V  + G++V+NP  DE D   LDL ++GT  AVLM+E   
Sbjct: 133 ASAALAISEVPQNCIVAGVRVGLVEGKWVVNPTKDELDASKLDLVMAGTASAVLMIEGHC 192

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL 252
           + L+E+ VL+AI FG      + +AI    K   KE      K  S + +     + ED+
Sbjct: 193 DFLTEEQVLEAIAFGQKYIAKICDAIEAWQKAIGKE------KQLSAVLD-----LPEDV 241

Query: 253 R--VSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +  VS FI EK+ +     D          L++ +V+    E S ++   + + F++ ++
Sbjct: 242 QNVVSNFIREKFEKALSFRDRDALEQVSKELEESVVANLVQEESDFSLLNVKAAFKNAKS 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R ++ D  +R+DGR +  +R IS +V  L RTHGS LF RG+TQ++ V TLG     
Sbjct: 302 NQMRALIRDLGIRVDGRSTTEIRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESMA 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+ ++FP
Sbjct: 362 QRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEASRFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+ S ITES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+ D D  I+LSDIS
Sbjct: 422 YTVRVESNITESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLILDQDKAIVLSDIS 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT+ GITA QMD+K+ GI+  IM  AL QAK+GR HILN M++V+S
Sbjct: 482 GIEDHLGDMDFKVAGTEEGITAFQMDIKVEGITHEIMEQALAQAKQGRSHILNLMTQVMS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
                +  + PR+E M I   +I  VIG GGK IR I+E++GA+V+I+D+G + I++++ 
Sbjct: 542 SPNDSVSRYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDNGLINISANTQ 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A+E+I  +T   EV KIY G+V  V+ FGAFV     ++GL HIS+LS ++V   
Sbjct: 602 ESIDKAKELIEGLTGEVEVGKIYNGRVTSVVAFGAFVEVLPGKEGLCHISELSKQKVDNV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +D VKEGD + VKLL  +++G++KLS K
Sbjct: 662 ADFVKEGDRLAVKLLSINEKGQLKLSHK 689


>gi|313895740|ref|ZP_07829296.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975866|gb|EFR41325.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 635

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/636 (45%), Positives = 424/636 (66%), Gaps = 7/636 (1%)

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           +TV+Y+E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF + ++N+ Q++  V+
Sbjct: 1   MTVDYEEKMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVL 60

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLF 177
             D ++ P + +M+ AS AL +S +PF GP+ G +V Y+NG +V+NP+ +E   S L+L 
Sbjct: 61  SVDQDNPPEIAAMLGASCALTVSDIPFMGPIAGVRVGYVNGAFVINPKEEERAVSELNLT 120

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDS 234
           V+G+ DAV+MVE  AN+LSE++VLDAI+FGH E + ++E    +   C KE   P +   
Sbjct: 121 VAGSYDAVMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSACGKEKQIPAIFAV 180

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
            +  +LEE++    +E L  +    +K  R   I  +K + + +F  E+    + EI  +
Sbjct: 181 SE--ELEEKIRVYAEERLDAATRNEDKLGRDADIAAIKSETMEHFIVEYPEQAK-EISQI 237

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
              I+  +VR ++  +K+R DGR    VR +S +VG+L RTHGS LF RG TQ + V TL
Sbjct: 238 LYKIEKSIVRHMITHEKIRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTL 297

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+  DEQ +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P
Sbjct: 298 GSIGDEQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIP 357

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ 
Sbjct: 358 SIEDFPYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYS 417

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL QAK GR  IL++
Sbjct: 418 ILTDIQGMEDALGDMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILDK 477

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + +   +L  + PRVE + I  D+IR+VIG GGKV+R I+++TG  ++I +DG + 
Sbjct: 478 MLECIDKPAEELSPYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVDIDIHEDGNIF 537

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S +   ++ AR+MI  I    EV +IY G+V + + FGAFV     ++GL HISQL+ 
Sbjct: 538 ITSPNTEAMDRARKMIEDIVRDVEVGEIYTGRVTRFLKFGAFVELLPGKEGLCHISQLAK 597

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            RV    +VV  GD + VK+++ D++G+I +S KV+
Sbjct: 598 HRVESVENVVHIGDELQVKVIEIDEKGRINVSHKVL 633


>gi|171778426|ref|ZP_02919584.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282827|gb|EDT48251.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 730

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 287/693 (41%), Positives = 437/693 (63%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E  +AGRP  +E G++A+Q++GA +  YGE+ VL+  V  + +  G DFFPL VNY+
Sbjct: 4   QTFETTFAGRPFVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAEQKEASLLELTVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++      +L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHEAVQELIAFQEEIVAAVGKEKAEVELLQVDPELQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+      DL+ +  + EK  R    + +K+++ + +   ++     E     +  + E 
Sbjct: 243 EIIAAYNADLQKAVQVEEKKTREAATEAVKEEVTAVYEERYADDENYETIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKIRPDGRRIDEIRPLDAEIDFLPKIHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 GETQIVDGLGDEYKKRFLHHYNFPQFSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  L    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++IDD+G V I S
Sbjct: 543 TIPAPRTHLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R 
Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           A  SDV++ GD V VK++  DD+G++  SMK +
Sbjct: 663 ANVSDVLEVGDEVDVKVIKVDDKGRVDASMKAL 695


>gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 732

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 285/687 (41%), Positives = 436/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+  + 
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVTVY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I SS  A I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGNVSIYSSDQAAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D++G++  SMK +
Sbjct: 669 VQIGDFVDVKVIKIDEKGRVDASMKAL 695


>gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           thermocellum ATCC 27405]
 gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
 gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           ATCC 27405]
 gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
          Length = 700

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 296/692 (42%), Positives = 451/692 (65%), Gaps = 13/692 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  +E AGR L +ETG++A+ ++G+VL  YG+TVVL+T     + ++G DFFPL+V+Y+E
Sbjct: 4   TFSMELAGRTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVGKIPGG+++RE +P+E  IL +R+IDR +RPLF K  +N+  ++  V+  D ++S
Sbjct: 64  RLYAVGKIPGGFIKREGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNS 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +++ +S A+ +S +PF GPV    +  I+G+ ++NP   + + S + + ++GT++ 
Sbjct: 124 PELAALLGSSIAVSISDIPFNGPVGAVILGLIDGEVIINPTEKQKEISQMYVTLAGTRNK 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           ++M+E  AN++ ++V+LDAI  GH E K +++ I  + K   K     +S   +++ EE+
Sbjct: 184 IVMIEAGANEVPDEVMLDAIKKGHEEIKKIVDFIDGIVKEVGKPKFEYES---AEVPEEI 240

Query: 245 SQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++E     +R +    +K VR K IDDL K++  +F+ E     E  I      ++ 
Sbjct: 241 FNAVREYAYDKMREAVLAVDKQVRDKNIDDLTKEITEHFA-EVFPEMEPAIKEAIYKLEK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  +L++  R+DGR  + +R +SA+VGLL R HGS LF RG TQ +  VTLG   D 
Sbjct: 300 KVVREYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDV 359

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FP
Sbjct: 360 QILDGIDTEETKRYMHHYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFP 419

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILS 477
           YT+R+VSE+  S+GS+S  +VCGS+LALMDAGVPI KPVAGI+ GLV D    D F+   
Sbjct: 420 YTIRVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFM 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536
           DI G ED  G MDFKVAGT  GITA+Q+D+KI G++E I+  A +  ++GRL+I+ N + 
Sbjct: 480 DIQGIEDFFGDMDFKVAGTKDGITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLL 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K + E R Q+ ++ P++    I PD+IR VIG GGK+I  I+++TG K++I+DDG V I 
Sbjct: 540 KAIPEPRKQMSKYAPKIISTTINPDKIREVIGPGGKMINKIIDETGVKIDINDDGRVYIF 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS +   + AR MI +I    E  +++ G+V++V  FGAFV F   ++GLVHIS+L  +R
Sbjct: 600 SSDIQAGKRARSMIEAIAKDIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V +  D+V+ GD + VK+++ D +G++ LS K
Sbjct: 660 VERVEDIVRVGDQILVKVIEIDKQGRVNLSRK 691


>gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 1313]
          Length = 700

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 296/692 (42%), Positives = 451/692 (65%), Gaps = 13/692 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  +E AGR L +ETG++A+ ++G+VL  YG+TVVL+T     + ++G DFFPL+V+Y+E
Sbjct: 4   TFSMELAGRTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVGKIPGG+++RE +P+E  IL +R+IDR +RPLF K  +N+  ++  V+  D ++S
Sbjct: 64  RLYAVGKIPGGFIKREGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNS 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +++ +S A+ +S +PF GPV    +  I+G+ ++NP   + + S + + ++GT++ 
Sbjct: 124 PELAALLGSSIAVSISDIPFNGPVGAVILGLIDGEVIINPTEKQREISQMYVTLAGTRNK 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           ++M+E  AN++ ++V+LDAI  GH E K +++ I  + K   K     +S   +++ EE+
Sbjct: 184 IVMIEAGANEVPDEVMLDAIKKGHEEIKKIVDFIDGIVKEVGKPKFEYES---AEVPEEI 240

Query: 245 SQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++E     +R +    +K VR K IDDL K++  +F+ E     E  I      ++ 
Sbjct: 241 FNAVREYAYDKMREAVLAVDKQVRDKNIDDLTKEITEHFA-EVFPEMEPAIKEAIYKLEK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  +L++  R+DGR  + +R +SA+VGLL R HGS LF RG TQ +  VTLG   D 
Sbjct: 300 KVVREYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDV 359

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FP
Sbjct: 360 QILDGIDTEETKRYMHHYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFP 419

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILS 477
           YT+R+VSE+  S+GS+S  +VCGS+LALMDAGVPI KPVAGI+ GLV D    D F+   
Sbjct: 420 YTIRVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFM 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536
           DI G ED  G MDFKVAGT  GITA+Q+D+KI G++E I+  A +  ++GRL+I+ N + 
Sbjct: 480 DIQGIEDFFGDMDFKVAGTKDGITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLL 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K + E R Q+ ++ P++    I PD+IR VIG GGK+I  I+++TG K++I+DDG V I 
Sbjct: 540 KAIPEPRKQMSKYAPKIISTTINPDKIREVIGPGGKMINKIIDETGVKIDINDDGRVYIF 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS +   + AR MI +I    E  +++ G+V++V  FGAFV F   ++GLVHIS+L  +R
Sbjct: 600 SSDIQAGKRARSMIEAIAKDIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V +  D+V+ GD + VK+++ D +G++ LS K
Sbjct: 660 VERVEDIVRVGDQILVKVIEIDKQGRVNLSRK 691


>gi|187610335|sp|Q9RSR1|PNP_DEIRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 779

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 304/682 (44%), Positives = 437/682 (64%), Gaps = 10/682 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETG++A+   G+V   YG+T++L T     + +   DF PLTV ++ER YAVG
Sbjct: 11  GGRELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDT-QSKLDFLPLTVEFEERHYAVG 69

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D +++P V+  
Sbjct: 70  KIPGSFQRREGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQNAPDVLGP 129

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           + A+AAL +S +P+ GP    +V  I+GQYV+NP  ++  +  +DL V+GT++AV+MVE 
Sbjct: 130 IGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRMDLVVAGTREAVMMVEC 189

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMI 248
            A  +SED ++ AI F H E + VI  I ++      E    + +    +    E+++  
Sbjct: 190 GAQTVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHEKFNFLAEEGPANDYVPELTEKA 249

Query: 249 KE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV----V 303
           K   LR +     K  R  ++  L+  ++  +  + ++    E+    +D   KV    +
Sbjct: 250 KAAGLRDALLTHGKKDRSARLKALRNGLIEGYVPDPTAEGSAELTQALKDAFGKVEKREL 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L++ +R DGRDS+TVR I  +   L   HGS++F RG+TQ + V TLGT  DE  +
Sbjct: 310 RRLILEENLRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+    + F++HYNF P +TGEV RMG  SRREIGHG LA+RAI  VLP   +FPY +
Sbjct: 370 DDLTAESGDKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V ++ ES+GSSSM TVC  +L+LMDAGVP+  PVAG+AMGLV +GD++ +L+DI G E
Sbjct: 430 RVVGDVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGDNYRVLTDILGLE 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKV GT  G+TA+QMD+K+GGI+  IM  AL QAK GRLHIL +M++VL+  R
Sbjct: 490 DALGDMDFKVCGTAEGVTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMAEVLAAPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P +  + I P+ I  VIG GGK +R + E  GA+V I++DGTV+I S+S    
Sbjct: 550 AELSPTAPHILSLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTVRIFSASGESA 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA +  I ++T   +V + ++G VVK+  FGAFV+    +DG++HISQLS +RV    DV
Sbjct: 609 EAVKARIEAVTKEAKVGEEFEGTVVKIAPFGAFVNLFPGQDGMLHISQLSEQRVENVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685
           +  GD + VK+ + DDRGKI L
Sbjct: 669 LTVGDKLKVKIANIDDRGKIDL 690


>gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
 gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
          Length = 705

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/681 (42%), Positives = 439/681 (64%), Gaps = 14/681 (2%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGKIPGG 76
           +ETG +ARQS  +++   G T VL +VV     K  + +FFPL VNYQER+Y++G+IPG 
Sbjct: 22  IETGSLARQSTSSLIIHMGGTSVLISVVEQTEEKKQESNFFPLIVNYQERSYSIGRIPGS 81

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           + RRE R  ENEIL SR+IDRS+RP F + ++NE Q+I  V+  + + +P ++S++ ASA
Sbjct: 82  FFRREGRSGENEILTSRLIDRSLRPAFPEQFRNEIQIIATVVSVNPKINPDILSIIGASA 141

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELEANQL 195
           AL +S +PF GP+   ++ YI G+Y+LNP   D  +  LDL VSGT+D +LMVE  ++ L
Sbjct: 142 ALSISHIPFHGPIGSVRIGYIGGRYILNPSYEDLKESELDLIVSGTEDKILMVEARSSLL 201

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV--IDSKDFSKLEEEMSQMIKEDLR 253
            ED++L+AI F     K +I+ I+KL++    + +    +  DF  L+  + + +++DLR
Sbjct: 202 KEDIILEAIDFSKKYQKTIIDNINKLSEKIGSKKVFQKKEETDFH-LKNYILEKVEKDLR 260

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
            +  IP+K  R  +I ++K K+ S  S     +N  +   +F  I+ ++VR+ +L++ +R
Sbjct: 261 DAYLIPDKKTRLSRIQEIKDKIFSEASLNLEVFNSFQANEIFFGIEKEIVRSRILNEGIR 320

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           +DGR    +R I  +VG+L RTHGSSLF RG+TQ +V+VTLG   D Q  D + G + + 
Sbjct: 321 IDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKLDH 380

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F++HYNFLP + GE+  +G P RREIGHG L +R +  V+P  + F YT+R+VSE+ ES+
Sbjct: 381 FILHYNFLPYSVGEIGLVGVPKRREIGHGNLVKRGMIAVMPNFSNFSYTIRVVSEVIESN 440

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           GSSSMA+ CG+SLA+MDAG+PI   +AGI++GL+K+ ++F+ILSDI GDEDH G MDFKV
Sbjct: 441 GSSSMASACGTSLAMMDAGIPIKSAIAGISIGLIKEKENFVILSDILGDEDHFGDMDFKV 500

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
            G + GI+A+QMD+KI GI + I+  AL QAK  R  IL +M   +S  R  +  F PR+
Sbjct: 501 MGNEEGISALQMDLKINGIEDEILRFALFQAKEARCKILKKMKNAISNPRKSISNFAPRI 560

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
             + I P +I+++IG GG  IR + E+T + ++I+D G VKI+S     I+     I+ I
Sbjct: 561 RKIYIEPHKIKDLIGKGGSTIRSLTEETNSVIDIEDTGEVKISSMDELSIKKTILRIKEI 620

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHIS--------QLSTERVAKTSDVV 664
           T   E+  +YK +V++++DFG FV      ++GLV +         + S ++V      +
Sbjct: 621 TSEVEIGCVYKAKVIRIVDFGLFVSILSNKKEGLVRMQTNKPLKDIRFSNKKVTSRKSQI 680

Query: 665 KEGDTVWVKLLDFDDRGKIKL 685
           + G  + VK +D D +G+I+ 
Sbjct: 681 QIGQILSVKAVDIDRQGRIQF 701


>gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
 gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
          Length = 702

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/686 (43%), Positives = 445/686 (64%), Gaps = 7/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           + +GR LK+  G++A Q++G+ L   GETVVL      +  ++G DFFPL+ +++E+ Y+
Sbjct: 8   DLSGRELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYS 67

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE RP+E  IL SR+IDR +RPLF + Y+N+ QVI   +  + ++ P ++
Sbjct: 68  VGKIPGGFIKREGRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPDIL 127

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF GP     V Y++G+YV+NP + + + S L++ VSGT+DA++MV
Sbjct: 128 AMIGSSIALTISDIPFNGPTGSVNVGYVDGEYVINPTIAQREKSRLNITVSGTKDAIMMV 187

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEEMSQ 246
           E  A+ LSE+ VL+AI+F H E K +   I  + +   KE   ++I  +D   L   + +
Sbjct: 188 EAGADILSEEEVLNAILFAHEEIKSICNFIETIREEVGKEKSEVIIKQRD-EDLFNSIIE 246

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
             KE +  +   P K  R + +D + K++   F  ++    +GEI S  E +    VR +
Sbjct: 247 FSKEQIISALRTPNKMEREENLDKITKEIFEKFLPDYED-KKGEINSAIESVIVDEVRRL 305

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++++ +R D R+ + VR IS + GLL RTHGS LF RG TQ + + TLG   + Q +D +
Sbjct: 306 IIEEGIRPDDRELDEVRKISCERGLLPRTHGSGLFTRGQTQVLTLTTLGAPGEVQVLDGV 365

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  +M  YNF P + G+V  + +P RREIGHG LA RA+ PVLP   +FPYT+R+V
Sbjct: 366 IDEDDKRYMHQYNFPPFSVGDVRPLRSPGRREIGHGALAERALVPVLPSEEEFPYTMRLV 425

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484
           SE+  S+GSSS A++CGS+L+L+DAGVPI   VAGIAMGL+KD   +   IL+DI G ED
Sbjct: 426 SEVLSSNGSSSQASICGSTLSLLDAGVPIKDSVAGIAMGLIKDEKTNKIAILTDIQGLED 485

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           H G MDFKVAGT  GITA+QMD+KI GIS  I+  AL++AKR RLHIL+ M+  ++    
Sbjct: 486 HFGDMDFKVAGTKDGITALQMDIKIDGISREILATALEKAKRARLHILSIMNDCIATPSE 545

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ ++ P++  M I P++IR VIG GGKVI  I+++TG K++  DDG + I + S    E
Sbjct: 546 EMSKYAPKIFTMQILPEKIREVIGPGGKVINKIIDETGVKIDTFDDGRIAITADSRKNGE 605

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A EMI  I    EV +IY G +  + +FGAFV     ++GL+HIS ++ ER+ K  D+ 
Sbjct: 606 RAIEMINEIVKEIEVGEIYSGVITTITNFGAFVELIKGKEGLLHISNMTHERLNKVEDLF 665

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD V VK+++ D++GKIKLS K +
Sbjct: 666 KVGDVVEVKVIEIDNQGKIKLSRKAL 691


>gi|15807057|ref|NP_295786.1| polynucleotide phosphorylase/polyadenylase [Deinococcus radiodurans
           R1]
 gi|6459851|gb|AAF11608.1|AE002042_3 polynucleotide phosphorylase [Deinococcus radiodurans R1]
          Length = 810

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 304/682 (44%), Positives = 437/682 (64%), Gaps = 10/682 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETG++A+   G+V   YG+T++L T     + +   DF PLTV ++ER YAVG
Sbjct: 42  GGRELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDT-QSKLDFLPLTVEFEERHYAVG 100

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D +++P V+  
Sbjct: 101 KIPGSFQRREGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQNAPDVLGP 160

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           + A+AAL +S +P+ GP    +V  I+GQYV+NP  ++  +  +DL V+GT++AV+MVE 
Sbjct: 161 IGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRMDLVVAGTREAVMMVEC 220

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMI 248
            A  +SED ++ AI F H E + VI  I ++      E    + +    +    E+++  
Sbjct: 221 GAQTVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHEKFNFLAEEGPANDYVPELTEKA 280

Query: 249 KE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV----V 303
           K   LR +     K  R  ++  L+  ++  +  + ++    E+    +D   KV    +
Sbjct: 281 KAAGLRDALLTHGKKDRSARLKALRNGLIEGYVPDPTAEGSAELTQALKDAFGKVEKREL 340

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L++ +R DGRDS+TVR I  +   L   HGS++F RG+TQ + V TLGT  DE  +
Sbjct: 341 RRLILEENLRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILI 400

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+    + F++HYNF P +TGEV RMG  SRREIGHG LA+RAI  VLP   +FPY +
Sbjct: 401 DDLTAESGDKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVI 460

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V ++ ES+GSSSM TVC  +L+LMDAGVP+  PVAG+AMGLV +GD++ +L+DI G E
Sbjct: 461 RVVGDVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGDNYRVLTDILGLE 520

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKV GT  G+TA+QMD+K+GGI+  IM  AL QAK GRLHIL +M++VL+  R
Sbjct: 521 DALGDMDFKVCGTAEGVTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMAEVLAAPR 580

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P +  + I P+ I  VIG GGK +R + E  GA+V I++DGTV+I S+S    
Sbjct: 581 AELSPTAPHILSLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTVRIFSASGESA 639

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA +  I ++T   +V + ++G VVK+  FGAFV+    +DG++HISQLS +RV    DV
Sbjct: 640 EAVKARIEAVTKEAKVGEEFEGTVVKIAPFGAFVNLFPGQDGMLHISQLSEQRVENVEDV 699

Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685
           +  GD + VK+ + DDRGKI L
Sbjct: 700 LTVGDKLKVKIANIDDRGKIDL 721


>gi|302874669|ref|YP_003843302.1| polyribonucleotide nucleotidyltransferase [Clostridium
           cellulovorans 743B]
 gi|307690717|ref|ZP_07633163.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           cellulovorans 743B]
 gi|302577526|gb|ADL51538.1| polyribonucleotide nucleotidyltransferase [Clostridium
           cellulovorans 743B]
          Length = 705

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/692 (42%), Positives = 451/692 (65%), Gaps = 13/692 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H +E   AGR LK+E G+I   S+ A+L +YG+TVV+       + +DG DFFPL++ Y+
Sbjct: 3   HILETTVAGRTLKVEFGKIGMLSNCAMLISYGDTVVMVNANASENPRDGIDFFPLSIEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE RP+E  IL +R IDR IRPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERFYSVGKIPGGFIKREGRPSEKSILNARAIDRPIRPLFPKGYRNDVQVVCTVLSVEQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P++++M  AS  L+LS +PF  PV    V  I+G +VLNP ++E +  ++DL +  T++
Sbjct: 123 LPNILAMNGASLGLLLSSIPFVDPVATVSVGLIDGNFVLNPTVEERKLSTMDLTICATRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV-IDSKDFS 238
            V+M+E   +++ E+V++ AI +G  +C+P+I    EA SK  K      +  +D     
Sbjct: 183 RVMMIEASGDEIPEEVMISAINYGFEQCQPIIKFQEEARSKFGKEKVTPTLYHVDET--- 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+E+++   E L+ + +I +K  R +++  +K+ + S F+ ++    +G+I  V  + 
Sbjct: 240 -LEKEVTEYSFEMLKEAMYITDKDQRNERLKVIKEDINSAFAEKYPDA-KGDIGEVIYNT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR +ML+KK R DGR  + VR+I  +V LL RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRDMMLNKKRRPDGRAFDEVRNIGCEVDLLPRTHGTGLFTRGLTQVLTVATLGAIG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L   +   +M HYNF   + GEV  +  P RREIGHG LA +A+ P++P   +
Sbjct: 358 DVQIIDGLGEEESKRYMHHYNFPAYSVGEVKPLRGPGRREIGHGALAEKALVPLIPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ + D     +L
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITNEDLTQEGVL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT  GITA+Q+D KI G+S+ ++  A++ A++ RLHIL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTTKGITAIQVDTKIKGLSDYVIRTAIEDARKARLHILEKID 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L ++ PR+  M+I P++IR+VIG GGKVI  I+ +TG K++I +DG + I 
Sbjct: 538 ECIEKPREELSQYAPRIITMSIDPEKIRDVIGAGGKVINKIIAETGVKIDIKEDGKIFIM 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+       A +MI  +T   +V +IY G+V K+  FGAFV     ++GLVHIS+L   R
Sbjct: 598 SADSVGANKAVKMIDDLTREIKVGEIYLGKVTKITTFGAFVEVLPNKEGLVHISKLDVTR 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K  D+V  GD + VK+ + D++G++ LS K
Sbjct: 658 VNKVEDIVSVGDEILVKVTEIDNQGRVNLSRK 689


>gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK72]
          Length = 733

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NPR ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|325111014|ref|YP_004272082.1| polyribonucleotide nucleotidyltransferase [Planctomyces
           brasiliensis DSM 5305]
 gi|324971282|gb|ADY62060.1| Polyribonucleotide nucleotidyltransferase [Planctomyces
           brasiliensis DSM 5305]
          Length = 711

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 301/690 (43%), Positives = 440/690 (63%), Gaps = 6/690 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +VE E AGR  K  TG IA+Q+ GAVLA +G+TV+L       + ++G DFFP+TV+Y+E
Sbjct: 7   SVEREIAGRIFKFSTGEIAKQASGAVLAQFGDTVLLVAAQTGPA-REGIDFFPMTVDYRE 65

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A GK PGG+L+RE RP+ +EIL +R+ DR +RPLF K + +E QV   V+  D E+ 
Sbjct: 66  RFAAAGKFPGGFLKREGRPSTHEILTARLTDRPLRPLFPKSFHDEVQVQSIVLSSDGENP 125

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             VVS+  ASAAL LS +PF+GP+   +V  I G+++L P  ++ DQG LDL V+G +++
Sbjct: 126 SDVVSINGASAALSLSPVPFQGPIGAVRVGMIEGEFILFPTKEQIDQGDLDLVVAGNKES 185

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           +LM+E    Q+ EDV+ DA++F H     + E   +L K    E    +    +    E+
Sbjct: 186 ILMIEGFGRQIPEDVMADALMFAHKGIIELCELQEELVKAAGVEKFEWEEPAENPFIGEV 245

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVV 303
            ++    L+ +    EK  R +    +K++++  F  E ++ +E G  ++  +D   KV 
Sbjct: 246 RELAASKLKAARTNSEKQKRSEAAAAVKEELIEKFFPEGATEDEQGRTLAQLKDAIYKVD 305

Query: 304 RTVMLDKKV---RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +    D  +   R+DGR    +R IS +VGL+ R HGS+LF RG+TQ++  +TLGT  D+
Sbjct: 306 KQACRDLTIEGKRLDGRGPTDLRQISCKVGLVPRVHGSALFTRGETQSLASLTLGTVRDQ 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q V+ L G     FM+ YNF   + GEV  +  P RREIGHG LA R++  VLP  + FP
Sbjct: 366 QRVEDLFGEHTKRFMLDYNFPSYSVGEVRPIRGPGRREIGHGALAERSVQWVLPDESAFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RI+S+ITES+GSSSMA+VC ++LALMDAG+PI +PVAGI++GLVKDGD + +L+DI 
Sbjct: 426 YTIRIISDITESNGSSSMASVCNATLALMDAGIPIRQPVAGISIGLVKDGDKYTLLTDIM 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDH G MDFK+AGT  GIT +Q+D+KI GI+E I+   L+QA++ RL +L  M   + 
Sbjct: 486 GDEDHFGDMDFKIAGTQKGITGIQLDLKIDGINEEIIRGTLEQARKARLELLKAMLTEIR 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++    PR+    I P++I  +IG GGK IR + E TG +++I++DGTV IASSS 
Sbjct: 546 RPRKEISMLAPRILTCKIDPEKIGLLIGPGGKNIRQLQEDTGTQIDIEEDGTVTIASSSG 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              EAA+  I ++T+   V ++Y G V+ + DFGAF+     +DGL HIS+LS   V   
Sbjct: 606 EGAEAAKARIEAMTEEVRVGRVYNGTVIAIKDFGAFIEIAPGKDGLCHISELSDGFVKNV 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DV K GD + VK++  D++ ++KLS K +
Sbjct: 666 GDVCKIGDKMEVKVIAVDEQNRVKLSRKAL 695


>gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
 gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
          Length = 703

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/691 (43%), Positives = 433/691 (62%), Gaps = 8/691 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TVE ++AGR L + TG +A+Q+ GAV   YGET+V        S + G DFFPLT +Y+E
Sbjct: 4   TVERQFAGRTLSITTGELAKQAAGAVTIQYGETMVFVAAQNGPS-RPGTDFFPLTCDYRE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A GK PGG+++RE RPT  E+L SR+ DR IRPLF + Y  E QV+ NV+  D  + 
Sbjct: 63  RLAAAGKFPGGFIKREGRPTLREVLTSRLTDRPIRPLFPEGYIEEVQVMSNVLASDGVND 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P V+S++ ASAAL L+ +PF+GP+   +V  I+G+++L P  ++   S LDL V+GT+ +
Sbjct: 123 PDVLSIIGASAALCLAPVPFQGPLAAVRVGLIDGEFILFPTQEQIADSELDLVVAGTEKS 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           VLM+E    QL ED + DAI+FGH     + +   +L     +E  V+ + + +  E  +
Sbjct: 183 VLMIEGFGKQLPEDQMADAIMFGHRTIVELCQLQLELVAKSGRERFVLPAPEANPFEAIL 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-----SSEHSSWNEGEIVSVFEDIQ 299
            +     LR       K  R  Q    KK++++ F      +  +   + +  + F  ++
Sbjct: 243 LEKAYAKLREVKQSSVKKERSSQTSAYKKELLAEFFPNDAETTAAGLTKAQFFAAFYAVE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++LD  VR+DGR  + +R +S    +L R HGSSLF RG+TQ++  VTLGT  D
Sbjct: 303 TKAVRDLILDG-VRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIRD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q V+ L G +   FM+ Y F P + GE   +  P RRE+GHG LA R++  VLP   +F
Sbjct: 362 VQRVEGLFGEEAKAFMLDYYFPPYSVGECKPLRGPGRRELGHGALAERSVASVLPSPEKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R++S+I ES+GSSSMA+VC ++LALMDAGVPIS+PVAGI++GLVK  D FI+L+DI
Sbjct: 422 PYTIRVISDILESNGSSSMASVCSATLALMDAGVPISQPVAGISIGLVKSADRFILLTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDH G MDFKVAGT  G+T +Q+D+KI GISE I+   L+QAK+ R+ +L  M   +
Sbjct: 482 MGDEDHFGDMDFKVAGTQKGVTGIQLDLKIDGISEEIVRATLEQAKKARIELLKTMLSAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R ++    PR+    I P +I  +IG GGK IR I EQTGA ++I+DDGTV IASSS
Sbjct: 542 RRPRSEISTHAPRLLRTKIDPSKIGLLIGPGGKNIRAIQEQTGATIDIEDDGTVVIASSS 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A   + +I +  +V ++Y G V  + DFGAF+     +DGL HIS+LS   V  
Sbjct: 602 SVGAEDALARVEAIAEEIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELSDGFVKN 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ++VV+ G+ + VK++  D++ ++KLS K V
Sbjct: 662 VNEVVQVGEKIQVKVIAIDEQNRVKLSRKAV 692


>gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
 gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
          Length = 698

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 312/691 (45%), Positives = 447/691 (64%), Gaps = 23/691 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQERTYAVGK 72
           + L LETG +A+Q+DG+V+A  G+T+VLAT V D+  K G  DF PLTVNY+ERTYA GK
Sbjct: 16  KTLSLETGWVAKQADGSVIARMGDTMVLATAVSDKVQKPGISDFVPLTVNYKERTYAAGK 75

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+ +RESR ++ E L SR+IDRS+RPLF   Y  ET V   V+  D      V++++
Sbjct: 76  IPGGFFKRESRASKKETLASRIIDRSLRPLFPSGYTCETNVTAMVLSADGVYDTEVLAVM 135

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           A+S AL++S +PF  PV   ++  +NG +++NP L+E +   +DL +SG+ + +LMVE  
Sbjct: 136 ASSTALIISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCDMDLIISGSLEGMLMVEGG 195

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI--- 248
           A ++SE+ V+ A+       KP I+ + K A++  KE      + FS   E + Q +   
Sbjct: 196 AKEVSEEDVIKAL----ETAKPAIDILCK-AQLELKEKA--GKEKFSFQAETVPQDVVDL 248

Query: 249 ---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-----EDIQA 300
              K    V+  +   Y   KQ  D+K   +    +E      G+  S F     E++  
Sbjct: 249 GNNKYRAEVANILNAFY--DKQTRDVKIAELKAAFAEEIKEAHGDNASTFAGITMENLSY 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +  R ++L+K VR+DGR ++ +R +++  GLL R HGS+LF RG TQ +VV TLGT  D 
Sbjct: 307 EESRKLVLEKGVRVDGRKTDEIRQLNSITGLLPRAHGSALFTRGQTQGLVVTTLGTSGDA 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q V+SL  +    FM+HYNF   +TGE     AP RREIGHG LARRA+ P++P   +FP
Sbjct: 367 QLVESLEESYDETFMLHYNFPGFSTGECKPDRAPGRREIGHGELARRALLPLIPDADKFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VS+I ES+GSSSMA+VCG SL+L DAGVP+    +GIAMGL+K+GD + +LSDI 
Sbjct: 427 YTIRVVSDIMESNGSSSMASVCGGSLSLFDAGVPMKAACSGIAMGLIKEGDKYAVLSDIM 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKI-GGISENIMVMALQQAKRGRLHILNEMSKVL 539
           G EDHLG MDFK+ G+ +GITA QMD+K+ GGIS  I+  A+ QA +GR+HI++ M  VL
Sbjct: 487 GLEDHLGDMDFKLTGSRNGITAFQMDVKLAGGISIEILKEAVAQATKGRMHIMDHMDSVL 546

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R  + +F P +  M IP D+I  +IG GGK I+ I E T  K++I+DDG V+IA+ +
Sbjct: 547 PEPRKDVSKFAPVIYTMRIPQDKIGALIGPGGKNIKRITETTDTKIDINDDGVVQIAAVN 606

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++  A+  I  +T   E+NKIYKG+VV +  FGAFV     +DGL+HIS++  +R+ K
Sbjct: 607 GDKLAMAKAEIELLTAEVELNKIYKGKVVSIQPFGAFVELIPGKDGLLHISEIDKKRINK 666

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DV+K GD V VK+++ D+ GK++LS KV+
Sbjct: 667 VEDVLKMGDIVEVKVVEIDNNGKVRLSRKVL 697


>gi|15895084|ref|NP_348433.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           acetobutylicum ATCC 824]
 gi|81530281|sp|Q97I45|PNP_CLOAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15024781|gb|AAK79773.1|AE007689_11 Polyribonucleotide nucleotidyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|325509222|gb|ADZ20858.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           acetobutylicum EA 2018]
          Length = 703

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/693 (43%), Positives = 446/693 (64%), Gaps = 9/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H +E + AGR LK+E G+    S+ A+  +YG+TVV+  V      ++G DFFPL++ Y
Sbjct: 2   LHFLETDIAGRKLKVECGKTGMLSNCAMFISYGDTVVMVNVNASEKPREGIDFFPLSIEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE RP+E  IL +R IDR +RPLF K Y+N+ QV+  VM  + +
Sbjct: 62  EERQYSVGKIPGGFVKREGRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P +++M  AS AL LS +PF  PV    V  I+G++VLNP L+E ++ SLDL V  T 
Sbjct: 122 NLPEILAMNGASMALCLSDIPFTTPVATVSVGCIDGKFVLNPTLEEREKSSLDLTVCATN 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSK 239
           + V+M+E  A+++ ED+++ AI FG N C+ ++    K  K   KE   P +   K+  +
Sbjct: 182 ERVMMLEAGADEIPEDLMIAAIDFGFNACQDIVAFQEKAMKEFGKEKVTPELYHPKE--E 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +E+++++   E ++   +I ++  R  ++ ++K+K+ + F+ ++   +  +I  V   +Q
Sbjct: 240 IEKDVTEFAFESIKEIMYITDRDERNLRLREIKEKISNEFAEKYPD-DGADIDEVVYTLQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR ++L +  R DGR  + +R IS  V LL RTHGS LF RG TQ + V TLG   D
Sbjct: 299 KKVVRNMLLKEHRRPDGRRFDEIRPISCDVDLLPRTHGSGLFTRGLTQVMTVTTLGPIGD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   +M HYNF P +TGEV  +  P+RREIGHG LA +A+ P++P   +F
Sbjct: 359 AQVIDGLGVEESKRYMHHYNFPPYSTGEVKPLRGPNRREIGHGALAEKALVPLIPSEEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI +P AGIAMGL+   D     +++
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSEDLSKEAVIT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GITA+Q+D KI G+S+  +  A+  A++ RL IL +M  
Sbjct: 479 DIQGLEDFFGDMDFKVAGTEKGITAIQVDTKIHGLSKYCIKTAINDARKARLFILEKMVA 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L  + PR   + I  D+IR +IG GGK I  I+E+TG K++I +DGTV + S
Sbjct: 539 CINEPRKELSTYAPRAYTINIDTDKIRTLIGTGGKTINKIIEETGVKIDIREDGTVFVLS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S       A +MI  +T   +V ++Y G+V K+ +FGAFV     ++GLVHIS+L   +V
Sbjct: 599 SDADSANRALKMIDDLTKDVKVGEVYLGKVTKITNFGAFVEVLPGKEGLVHISKLDINKV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  DVV  GD + VK+ D D++G++ LS K V
Sbjct: 659 NKVEDVVSVGDEILVKVTDIDNQGRVNLSRKDV 691


>gi|307126791|ref|YP_003878822.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|306483853|gb|ADM90722.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|332077021|gb|EGI87483.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA17545]
          Length = 737

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 288/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ AV MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAVNMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
 gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
          Length = 713

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 305/689 (44%), Positives = 445/689 (64%), Gaps = 15/689 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQER 66
           E E AGR L LETG+ A+Q+ G+VL  YG+TVVLAT    D  ++   DF PLTV ++ER
Sbjct: 15  ETEIAGRTLILETGKYAKQASGSVLVRYGDTVVLATAQASDEPVE--ADFLPLTVEFEER 72

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E QVI+ V+  D ++ P
Sbjct: 73  HYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKNPP 132

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            ++  +AASAALMLS +P+EGPV   +V  + GQ VLNP L E ++ +LDL V+G++DA+
Sbjct: 133 DILGPIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEESALDLVVAGSRDAI 192

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           LMVE  A ++ E+ ++ A+ F H E +P+++   ++A+   K P +  +   +  EEE  
Sbjct: 193 LMVEAGAQEVDEETLVQALEFAHREMQPILDLQERMARELGK-PKMAWTPPETLPEEEKE 251

Query: 246 QM----IKEDLRVSCFIPEKYVRCKQIDDLKKKMV--SYFSSEHSSWNEGE---IVSVFE 296
            +    +++ L        K  R + +    + ++  +    E  + +EG+     S F+
Sbjct: 252 ALYRLALEKGLSQVLQTASKGERSRALSAFAESLILEALPRLEDGAPDEGKRPLYESAFD 311

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I  + +R ++L++  R DGR  + +R I  +V +L R HGS++F RG+TQ +  VTLGT
Sbjct: 312 EIVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGT 371

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D L   + + F++HYNF P +TGEV R+   SRRE+GHG LA+RA+  VLP  
Sbjct: 372 GRDEQIIDDLGIDETDPFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALRAVLPSQ 431

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+V ++ ES+GSSSMATVC  SLALMDAGVP+  PVAG+AMGLV + +  +IL
Sbjct: 432 EAFPYTIRVVGDVLESNGSSSMATVCAGSLALMDAGVPVKAPVAGVAMGLVWENEKAVIL 491

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  RL IL+ M 
Sbjct: 492 TDILGLEDALGDMDFKVAGTRQGVTALQMDNKVGGLPREVLKEALLQAREARLKILDLME 551

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            VL   R  L  F PR+  + +P D+I  VIG GGK +R + E+ G +V+I++DGT++I 
Sbjct: 552 MVLPAPRPSLKPFAPRILSLKVPVDKIGIVIGPGGKNVRAL-EELGVEVDIEEDGTIRIY 610

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS + + E A+  I  +T   +V +IY+G V ++  FGAF+      +GL+HISQ++  R
Sbjct: 611 SSDMEKAEKAKARIEELTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAPGR 670

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V +  D +K GD + VK+   D++GKI L
Sbjct: 671 VKRVEDHLKVGDVIKVKVHRIDEKGKIDL 699


>gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina
           EX-H1]
 gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina
           EX-H1]
          Length = 709

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/692 (43%), Positives = 460/692 (66%), Gaps = 9/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  VE +    P+ +ETG  A+QS+GAV+   GET V    V     +   DF PLTV+Y
Sbjct: 9   VEKVETKIQETPISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDY 68

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+TYA GKIPGG+++RE +PT  EIL+SR+IDR IRP+F K + N+  +    +  D +
Sbjct: 69  REKTYAYGKIPGGFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDK 128

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P V+++V ASAAL ++  PFEGPV G +V  ++G++++NP  ++ ++  +D+ V+GT+
Sbjct: 129 YDPDVLAIVGASAALHITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVVAGTK 188

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV--IDSKDFSKL 240
           DA++MVE  + ++SE+V+LDAI+F H E K + +   +L     KE I   ID +D  ++
Sbjct: 189 DAIVMVEGGSEEVSEEVILDAILFAHEEIKKLCDLQEELRSKVGKEKITVEIDEED-ERI 247

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           + E+  +++E ++ +  I +K  R K+I ++ ++ +           + E++  +++I +
Sbjct: 248 KAELESIVRESVKEAFNILDKKERNKRIKEIYEEAIQKIEIPEEKEKKAEVI--YKEIVS 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-RED 359
            ++R  +L +KVR+DGR  + +R I  + GL  R HGS++F RG TQA V  TLG   E+
Sbjct: 306 NIMREKVLKEKVRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEE 365

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           +       G ++  FM+HYNF P +TGE     APSRREIGHG LA RAI P++P   +F
Sbjct: 366 QIEESIEEGEEKKRFMLHYNFPPFSTGEARPPRAPSRREIGHGNLAERAIEPLIPDEEEF 425

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEI ES+GS+SMATVCG+SL+L DAGVP+ K VAGIAMGL+K+ DD++IL+DI
Sbjct: 426 PYVIRVVSEILESNGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYVILTDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+T++QMD+KI G+S+ I+  AL+QAK+ R+HIL+ M K +
Sbjct: 486 LGDEDHLGDMDFKVAGTRDGVTSIQMDIKIKGLSKEILQEALEQAKKARMHILDLMYKAM 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R +L    P+V  M + P++I  +IG  GK I+ I+++TG K+++D +G V+I +  
Sbjct: 546 PQPRPELSPHAPKVITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQEGLVRIYAVD 605

Query: 600 LAEIEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               + A+EMI R I D+ E+ ++Y G+V +V D+GAFV     +  L+H+SQ+S ER+ 
Sbjct: 606 GESADKAKEMIERLIMDI-ELGEVYMGKVTRVEDYGAFVELMPGKLSLLHVSQISPERIR 664

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              + +K GD + VK++D D+ G+ K+S+K V
Sbjct: 665 SAKEKIKVGDILTVKVIDIDEMGRAKVSLKEV 696


>gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
           12042]
 gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
           12042]
          Length = 731

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/690 (42%), Positives = 445/690 (64%), Gaps = 11/690 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  GR L +ETG IA+Q+ GAV+  Y +TVVL+T   + + KD  DFFPLTV+++E+ Y
Sbjct: 8   FDLCGRNLTIETGEIAKQAGGAVVVRYQDTVVLSTATANHTPKD-SDFFPLTVSFEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF++ ++NE QV+  V+  D + S  +
Sbjct: 67  SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDCSAEM 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M  AS AL +S +PF GP+ G  V  ++G++V+NP ++E + S + L V+GT+DA+ M
Sbjct: 127 AAMFGASCALCISDIPFNGPIAGVIVGRVDGKFVINPSVEESEKSDIHLTVAGTKDAINM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A ++SE+ ++DA++FGH+  K + E   ++   CAK  + I       +++ E+ +
Sbjct: 187 VEAGAKEVSEEEMIDALMFGHDHIKMLCEFQEQIIAKCAKPKMEIKLDVVPEEIKAEIDE 246

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVFEDIQA 300
           + K  L  +  I  K  R  +ID++  +M + F +   +  +       ++ +   +I A
Sbjct: 247 LAKARLIEAVSIKLKLERYGKIDEITDEMAALFEAREYASEKLKDKTVKQVRAYCTEIVA 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ ++K+R DGR  + +R +++QV LL R HGS++F RG+TQ +   TLG   D 
Sbjct: 307 NEVRRLISEEKIRPDGRAVDELRPLNSQVDLLPRVHGSAMFTRGETQVMSACTLGALGDN 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+  +   FM HYNF P + GE  RMG+P RREIGHG L  RA+  V+P   +FP
Sbjct: 367 QIIDDLTEIETKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALSAVIPSEEEFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDI 479
           YT+R+V+E+ ES+GSSS A++C  ++ALM AGVPI  PVAG+AMGL+K  D+ + +L+DI
Sbjct: 427 YTIRLVAEVLESNGSSSQASICAGTMALMSAGVPIKAPVAGVAMGLIKTSDEHYTVLTDI 486

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+GR  I+  M   +
Sbjct: 487 QGMEDHYGDMDFKVAGTPKGITALQMDIKIDGINRAILEEALAQAKKGRAEIMANMMAAI 546

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASS 598
           SE R ++  + P++  M IP D+IR VIG GGK+I  I+      K++I+DDG+V I  S
Sbjct: 547 SEPRPEVSPYAPKMYRMMIPVDKIREVIGTGGKMINQIIADCDNVKIDIEDDGSVVIYHS 606

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I  A E I  I    +V +IY G+VV++  FGAFV      DGL+H+S++  +RV 
Sbjct: 607 DKNAIMKAAETINQILREAKVGEIYDGKVVRLEKFGAFVELFPGTDGLLHVSKIDYKRVE 666

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K  DV+K GD + V + + D++G++ +S +
Sbjct: 667 KPEDVLKLGDVIKVIVTEIDEKGRVNVSHR 696


>gi|194398464|ref|YP_002037251.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae G54]
 gi|226702694|sp|B5E2A0|PNP_STRP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096717|sp|B2IMQ9|PNP_STRPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194358131|gb|ACF56579.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           G54]
 gi|301801461|emb|CBW34153.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           INV200]
          Length = 737

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|224540971|ref|ZP_03681510.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526122|gb|EEF95227.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
           15897]
          Length = 712

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 305/705 (43%), Positives = 451/705 (63%), Gaps = 24/705 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +++ G+ +++E G +A+Q++G+ L  Y +TVVL+T    +  KD  DFFPLTV Y+E+ Y
Sbjct: 8   MDFYGKKIQVEVGEMAKQANGSCLVRYDDTVVLSTACAGKEPKD-VDFFPLTVTYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D E++P +
Sbjct: 67  SVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQEATPEM 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN--PRLDEDQGSLDLFVSGTQDAVL 186
            +M+ AS AL +S +PF GP+ G  V  I+G++ +N  P  D  +  ++L V+GT+DA+ 
Sbjct: 127 AAMLGASIALCISDIPFNGPIAGVNVGLIDGEFTVNAGPE-DMARSEINLEVAGTKDAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSKDFSKLE 241
           MVE +A ++ E+ +L+A++FGH + K +I    ++ +   KE I      +D    S +E
Sbjct: 186 MVEADAKEVDEETMLNALMFGHEKIKELIAFQEQIVEAVGKEKIDVPLFALDENIVSSVE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNE-----GEIVSVF 295
                M KE++  +  IP K  R   ID+L  K+V  F   E+++  E      ++  V 
Sbjct: 246 ----AMAKEEMIKAISIPGKLERYAAIDELDAKVVESFEEKEYATVEEHDKTIKQVKMVL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++ + VR ++ ++KVR DGR  + VR + AQV LL R HGS++F RG+TQ +   TLG
Sbjct: 302 GDLEKEEVRRLITEEKVRPDGRKVDEVRPLDAQVDLLPRVHGSAMFTRGETQVLSACTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L    +  FM HYNF P   GE  RMG+P RREIGHG L  RA+  V+P 
Sbjct: 362 ALGEVQKIDGLGMEDQKRFMHHYNFPPYCVGETGRMGSPGRREIGHGALGERALRQVIPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+V+E+ ES+GSSS A++C S++ALM AGVPIS PVAG+AMGLVK G+++ I
Sbjct: 422 ETEFPYTIRVVAEVLESNGSSSQASICASTMALMAAGVPISNPVAGVAMGLVKKGENYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGT +GI A+QMD+KI GI++ I+  AL QAK  R  I++ M
Sbjct: 482 LTDIQGMEDHLGDMDFKVAGTKNGICALQMDIKIDGITKEILQEALAQAKVARGQIMDCM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVK 594
              +SE R  L  + P+V +M I P+QI++VIG GG +I  I+ E    K++IDD+G V 
Sbjct: 542 MSAISEPRDHLSPYAPKVAMMKIEPEQIKDVIGKGGDMINKIIAESDNVKIDIDDEGNVT 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S   I+ A  MI+ +T   EV +I+ G+ V+V +  AF+      +G +H+  ++ 
Sbjct: 602 IYHYSQEAIDHAMGMIKDLTRKVEVGEIFDGKAVRVEEKYAFIELFPGTNGFLHVKDVAW 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +R  K SDV+K GDTV VK+    D+G + +S K +     KPIV
Sbjct: 662 DRTNKVSDVIKLGDTVKVKVTQITDKG-VNVSRKAL---LPKPIV 702


>gi|225867825|ref|YP_002743773.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. zooepidemicus]
 gi|259534159|sp|C0MFB1|PNP_STRS7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225701101|emb|CAW97943.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 714

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/700 (40%), Positives = 441/700 (63%), Gaps = 8/700 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP   + + SL +L V+GT+D
Sbjct: 123 SAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +L E ++L+A++ GH   + +I    ++     KE   ++    +  L+ 
Sbjct: 183 AINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+ +    DL+ +  + EK  R    + +K+++++ +   ++   E +     +  + E 
Sbjct: 243 EIIETYNADLQQAVQVEEKKAREAATEAVKEQVMAAYEERYAEDEEHDRIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R ++A++  L R HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP   
Sbjct: 363 GDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I S
Sbjct: 543 TIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A+E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R 
Sbjct: 603 SDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           A  SDV++ G+ V VK++  DD+G+I  SMK +     KP
Sbjct: 663 ANVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702


>gi|149005700|ref|ZP_01829439.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147762640|gb|EDK69600.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP18-BS74]
          Length = 775

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 288/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ AV MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAVNMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 711

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/678 (43%), Positives = 432/678 (63%), Gaps = 5/678 (0%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            ETG  A+Q++G++    G TVVL T    ++  + Q FFPLTVNY E+ YA GKIPGG+
Sbjct: 21  FETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIPGGF 80

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            +RE++PT+NE L SR+IDR +RP+F   ++NETQVI +V+ +D  +SP +++M  ASAA
Sbjct: 81  FKREAKPTDNETLTSRLIDRPLRPMFPDGFRNETQVIAHVVSYDGVNSPDMLAMNGASAA 140

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLS 196
           LM+S +PF GP+ G +V  ++G+ ++NP  D  ++  +++ ++GT DA++MVE   + +S
Sbjct: 141 LMISDIPFNGPIAGVRVGRLDGKLIINPPADRLEELDMNIILAGTDDAIVMVEAGMSVVS 200

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVS 255
           E  V++A+ FGH+  K ++   +++     KE     S   + +L +E    + + L+ +
Sbjct: 201 EAEVIEALQFGHDNIKKLVAKQNEMVAALGKEKFEYTSFCVADELVDEAMAELSDKLKEA 260

Query: 256 CFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
             IP K  + + +D + ++ +     +     ++     +++ +++ K  R   +D K R
Sbjct: 261 LVIPAKLEKYEALDKIGEEYLEAMKEKLGEDDFDAELYKNIYHEVEKKAFRDFTIDTKTR 320

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           +DGR    +RDI  +  LL   HGS LF RG+TQA+VV TLGT+ D Q +D++ G  +  
Sbjct: 321 IDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGKKR 380

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           FM+HYNF P   GEV  +  P RREIGHG LA R++  VLP    FPYT+RIVSE+ ES+
Sbjct: 381 FMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDFPYTIRIVSEVLESN 440

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDEDHLGHMDFK 492
           GSSSMATVCG  LALMDAGVPI  PVAG+AMGL+ +G D F +LSDI G EDHLG MDFK
Sbjct: 441 GSSSMATVCGGCLALMDAGVPIKSPVAGVAMGLIYEGADRFAVLSDILGTEDHLGDMDFK 500

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
           V GT  GITA+QMD+KI G+S+ ++  AL QAK  R++IL +M+  +     +L    PR
Sbjct: 501 VTGTKDGITALQMDIKIEGLSQELLETALGQAKEARMYILGKMTDHMPVPNEELAPTAPR 560

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
              M I P++I  VIG GGK+I+ I+E++GA ++IDD GT+ I ++  A IE A   +  
Sbjct: 561 YVTMKINPEKIGMVIGPGGKMIKSIIEESGAAIDIDDTGTINIFAADKASIEIAVRRVNE 620

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I    E   +Y   V K+M++GAFV     ++ L+H+SQ S ER+   +D +  GD V V
Sbjct: 621 IVAEVEDGAVYDATVKKMMEYGAFVELIPGQEALLHVSQYSHERINSIADYLNVGDKVQV 680

Query: 673 KLLDFDDRGKIKLSMKVV 690
           K++  D  G+ KLS KV+
Sbjct: 681 KVVGKDPNGRFKLSRKVL 698


>gi|301799640|emb|CBW32198.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           OXC141]
          Length = 737

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E++   
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEITAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|149021550|ref|ZP_01835605.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930246|gb|EDK81231.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 737

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 441/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI +PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKEPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 733

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 286/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G Q+ Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|148983970|ref|ZP_01817289.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924117|gb|EDK75229.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 775

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E++   
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEITAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|237650139|ref|ZP_04524391.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821670|ref|ZP_04597515.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 737

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V++ Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEAYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|168490522|ref|ZP_02714665.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC0288-04]
 gi|182683523|ref|YP_001835270.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           CGSP14]
 gi|303253917|ref|ZP_07340038.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS455]
 gi|303260083|ref|ZP_07346056.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261267|ref|ZP_07347215.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263932|ref|ZP_07349853.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS397]
 gi|303265923|ref|ZP_07351819.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS457]
 gi|303268305|ref|ZP_07354102.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS458]
 gi|182628857|gb|ACB89805.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           CGSP14]
 gi|183575025|gb|EDT95553.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC0288-04]
 gi|302599093|gb|EFL66118.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS455]
 gi|302637401|gb|EFL67888.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638778|gb|EFL69240.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP-BS293]
 gi|302642143|gb|EFL72493.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS458]
 gi|302644507|gb|EFL74758.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS457]
 gi|302646337|gb|EFL76563.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS397]
          Length = 775

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|282889646|ref|ZP_06298186.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500473|gb|EFB42752.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 694

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/692 (42%), Positives = 435/692 (62%), Gaps = 12/692 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  ++   + +  ETG+IARQ++GAVL   GET++  T   D  L  G+DF PL V+YQ
Sbjct: 4   RTTRVKVGEQEIVFETGKIARQANGAVLVRSGETILFNTACADYDLAPGEDFLPLRVDYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+  + GK   G+++RE RP+E E L+SR+IDR +RP+F   Y NETQV+  V  +D  +
Sbjct: 64  EKFSSAGKTVSGFIKREGRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYDGVN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           +P  +++  ASAAL++S +P   PV   +V  I G++V+NP ++  + S LDL ++GT+D
Sbjct: 124 APEPLAICGASAALVISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQKKSKLDLILAGTED 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFS 238
           AVLM+E   + L+E+ +L+AI  GH   K + E +    K   K   +     +    F 
Sbjct: 184 AVLMIEGYCDFLTEEQILEAIEIGHQGIKAICETLLAWQKELGKPKTLHTLRPLPQDVFH 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFE 296
            +EE    ++++ LR+     EK  R + +  +K  +      E     +   ++ +  +
Sbjct: 244 SVEEIAKPLLEQALRIK----EKQKREEALGAVKSAVQQKLLPEDGEPLFPAKDVATALK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++ +K +R ++L++ VR DGR S  +R I  + G+L R HGSSLF RG+TQ++ V TLG 
Sbjct: 300 EVSSKYMREMILNENVRSDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGG 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
               Q  + L G     F + Y F P + GEV R+G+P RRE+GHG+LA RA+  +LP  
Sbjct: 360 ESMAQRFEDLDGEGSRTFYLQYFFPPFSVGEVGRIGSPGRREVGHGKLAERALQAILPPK 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+ S ITES+GSSSMATVCG  LA+M+AGVP+ +PVAGIAMGL+ + + FIIL
Sbjct: 420 EAFPYTIRLESNITESNGSSSMATVCGGCLAMMEAGVPVKRPVAGIAMGLILENERFIIL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED LG MDFK+ G   GITA QMD+K+ GI+ +IM  AL+QAK+GR+HIL +M 
Sbjct: 480 SDILGIEDALGDMDFKITGDAEGITAFQMDIKVEGITPSIMKAALEQAKKGRIHILGKML 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +V    + ++  + PR+E M I P +I  VIG GGK IR I+E +G +++I+DDG + IA
Sbjct: 540 EVCPTHKEEMSVYAPRIETMQIKPSKIATVIGPGGKQIRAIIEASGVEIDINDDGLISIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+L  IE A+ MI  +T   E+ K+Y G++  +  FG FV     ++GL HIS+    R
Sbjct: 600 SSNLEGIEKAKAMIVGLTSDVEIGKVYTGKIANIAPFGIFVEILPGKEGLCHISEFDNTR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +   +D VK GD + VK+L+ ++RG++KLS K
Sbjct: 660 INNLNDYVKIGDMITVKVLEINERGQLKLSRK 691


>gi|149002268|ref|ZP_01827210.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP14-BS69]
 gi|147759583|gb|EDK66574.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP14-BS69]
          Length = 775

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V++ Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEAYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|37522718|ref|NP_926095.1| polynucleotide phosphorylase/polyadenylase [Gloeobacter violaceus
           PCC 7421]
 gi|81709200|sp|Q7NGM0|PNP_GLOVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|35213720|dbj|BAC91090.1| polyribonucleotide nucleotidyltransferase [Gloeobacter violaceus
           PCC 7421]
          Length = 713

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/691 (43%), Positives = 443/691 (64%), Gaps = 17/691 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + L TG +A+ + G+VL   GET VL T       ++G DFFPL V+Y+ER YA G+
Sbjct: 12  GREIGLSTGVLAQLAGGSVLVQSGETAVLVTATMASKPREGIDFFPLLVDYEERLYAAGR 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG ++RRE RP E  IL +R+IDR +RPLF K + N+ Q++  V+  D+   P +++++
Sbjct: 72  IPGSFVRREGRPPEKAILAARLIDRPLRPLFPKGFINDVQIVATVLALDMNVPPDILAIL 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS A ML+G+PF+GPV   +V  +   +++NP   E ++G LDL V+GT++ ++MVE  
Sbjct: 132 GASTATMLAGIPFDGPVAATRVGLMGDDFIINPTYKEIEEGELDLVVAGTKNGIMMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFSKLEEEMSQ 246
           AN L E+ ++DAI +G+   + ++ A  +  +    EP+       D    S +EE+ S+
Sbjct: 192 ANCLPEEDIIDAIDYGYEAVQAMLTAQEEFIRDLKIEPMAFVAPANDPVLVSFVEEKASE 251

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSVFEDI 298
            + E LR   F   K  R  ++D ++ ++ + F+         E ++ N  ++ ++F+  
Sbjct: 252 AVAEVLR--SFELSKDERDAKLDAIEAELGTTFAGLGEEDPLREKAAANASKLPALFKST 309

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K++R  +L +  R+DGR  + VR IS+ V ++ R HG  LF RG TQ + VVTLGT  
Sbjct: 310 TKKLMRKQILVEGKRVDGRSLDEVRPISSAVRVIPRVHGCGLFTRGTTQVLSVVTLGTAS 369

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L       +M HYNF   + GEV  +    RRE+GHG LA RAI P+LP+  Q
Sbjct: 370 DAQELDDLHPDDSKRYMHHYNFPGFSVGEVKPLRGVGRREVGHGALAERAIVPILPEHEQ 429

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSE+  S+GS+SM +VC S+LALMDAGVPI +PV+G+AMGL+K+GD+  IL+D
Sbjct: 430 FPYVIRVVSEVLSSNGSTSMGSVCASTLALMDAGVPIREPVSGVAMGLIKEGDEVRILTD 489

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI GI+  I+  A+QQ+K GRLHIL +M   
Sbjct: 490 IQGIEDFLGDMDFKVAGTRDGITALQMDIKIQGITLQILEAAIQQSKAGRLHILEKMLIA 549

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R++L  + PR+  + IP D I  VIG GGK I+ IVE+TGAKV+I+DDGTV ++S 
Sbjct: 550 IDKPRVELSPYAPRLLTLKIPVDMIGLVIGPGGKTIKRIVEETGAKVDIEDDGTVVVSSI 609

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERV 657
             A+  AA+++I  +T   EV+K+Y G V +++ + GAFV     ++GLVHISQL+  RV
Sbjct: 610 DGAKALAAKQIIEGMTRTVEVDKVYLGTVTRIIPNLGAFVEVMPGKEGLVHISQLAEHRV 669

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  D +  GD V VK+ + D +G+I L+ +
Sbjct: 670 RKVEDELNVGDEVVVKVKEIDQKGRINLTRR 700


>gi|15902560|ref|NP_358110.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae R6]
 gi|116515732|ref|YP_816014.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae D39]
 gi|15458089|gb|AAK99320.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           R6]
 gi|116076308|gb|ABJ54028.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           D39]
          Length = 775

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|225858425|ref|YP_002739935.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae 70585]
 gi|254782737|sp|C1C5V9|PNP_STRP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225720166|gb|ACO16020.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae 70585]
 gi|332202469|gb|EGJ16538.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA41317]
          Length = 737

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|183603103|ref|ZP_02712475.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae SP195]
 gi|183603451|ref|ZP_02716891.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231415|ref|YP_002510567.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|254782738|sp|B8ZMC0|PNP_STRPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183572923|gb|EDT93451.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae SP195]
 gi|183577007|gb|EDT97535.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC3059-06]
 gi|220673875|emb|CAR68380.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|332074399|gb|EGI84875.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA17570]
          Length = 737

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|225871265|ref|YP_002747212.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. equi 4047]
 gi|254782736|sp|C0M913|PNP_STRE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225700669|emb|CAW95251.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. equi 4047]
          Length = 714

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/700 (40%), Positives = 441/700 (63%), Gaps = 8/700 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A++++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKRANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP   + + SL +L V+GT+D
Sbjct: 123 SAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +L E ++L+A++ GH   + +I    ++     KE   ++    +  L+ 
Sbjct: 183 AINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+ +    DL+ +  + EK  R    + +K+++++ +   +++  E +     +  + E 
Sbjct: 243 EIIETYNADLQQAIQVEEKKAREAATEAVKERVIAAYEERYAADEEHDRIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R ++A++  L R HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP   
Sbjct: 363 GDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+V+E+ ES+GSSS A++C  +LALM AGVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 AFPYAIRLVAEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I S
Sbjct: 543 TIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A+E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R 
Sbjct: 603 SDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              SDV++ G+ V VK++  DD+G+I  SMK +     KP
Sbjct: 663 TNVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702


>gi|187611307|sp|Q8DQT0|PNP_STRR6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611312|sp|Q04LT4|PNP_STRP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 737

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|325284098|ref|YP_004256639.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
           proteolyticus MRP]
 gi|324315907|gb|ADY27022.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
           proteolyticus MRP]
          Length = 810

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 305/682 (44%), Positives = 441/682 (64%), Gaps = 10/682 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETGR+A+   G+V   YG+T++L T    R  K   DF PLTV ++E+ YAVG
Sbjct: 11  GGRELTIETGRLAKLVSGSVTLRYGDTLLLVTA-QARQEKSTLDFLPLTVEFEEKHYAVG 69

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D +++P V+  
Sbjct: 70  KIPGSFSRREGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADQQNAPDVLGP 129

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQDAVLMVEL 190
           + A+AAL +S +P+ GP    +V  ++GQ+V+NP  +  ++  LDL V+GT+DAV+MVE 
Sbjct: 130 IGAAAALSISDIPWGGPTACVRVGRVDGQFVINPTAVQLERSDLDLVVAGTRDAVMMVEA 189

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMI 248
            A  ++ED ++DAI F H E + V++ I  +     +E    + D +    L  E+++  
Sbjct: 190 GAQVVAEDELVDAIEFAHAEMQGVLDLIDTMRAELGREKFNYLADGELAPDLVPELAEAA 249

Query: 249 KED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIVSVFEDIQAKVV 303
           +   LR +    +K  R   +  L+ +++     E     ++    E+ + F  ++ + +
Sbjct: 250 RASGLRDALLTLKKQDRSANLKALRDRLIQDRVPEGEVDGAAARIEELKAAFSKVEKQEL 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L++ +R DGRD+ TVR I  +V  L R HGS++F RG+TQ + V TLGT  DE  +
Sbjct: 310 RRLILEEDLRADGRDTRTVRPIWTEVRPLPRAHGSAIFTRGETQVLGVTTLGTERDEILI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+    + F++HYNF P +TGEV RMGA SRRE+GHG LA+RA+  VLP   +FPY +
Sbjct: 370 DDLTEDTGDKFLLHYNFPPYSTGEVKRMGAQSRREVGHGNLAKRALSAVLPPFEEFPYVI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V E+ ES+GSSSMATVC  +L+LMDAGVPI  PVAG+AMGLV +GD + IL+DI G E
Sbjct: 430 RVVGEVLESNGSSSMATVCSGALSLMDAGVPIKAPVAGVAMGLVMEGDRYRILTDILGLE 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKV GT  G+TA+QMD+KIGGI+  IM  AL QAK  RLHIL +M++VL   R
Sbjct: 490 DALGDMDFKVCGTAEGVTALQMDIKIGGITPAIMREALAQAKEARLHILGKMAEVLPAPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    PR+  M I P+ I  VIG GGK +R + E  GA+V I++DG V+I S++    
Sbjct: 550 AELSPTAPRIISMRIDPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGLVRIFSANGEAA 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A +E I ++T  P+V   ++G VVK+  FGAF++    +DG++HISQ+S ER+    +V
Sbjct: 609 KAVQERITAVTYQPKVGDEFEGTVVKIAPFGAFINLFPGQDGMLHISQMSEERIEMVEEV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685
           +     V VK+++ D+RGKI L
Sbjct: 669 LLLNQKVRVKIVNIDERGKIDL 690


>gi|148992301|ref|ZP_01822024.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP9-BS68]
 gi|149010792|ref|ZP_01832163.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147765273|gb|EDK72202.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147928927|gb|EDK79939.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP9-BS68]
          Length = 775

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 440/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
 gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
          Length = 716

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/704 (41%), Positives = 441/704 (62%), Gaps = 13/704 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H V       P+ +ETG++A+ +DGAV    GET+V  + V   ++K+GQDFFPLTV+Y
Sbjct: 3   IHNVTAHIGAHPITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  AVGK PGGY +RE RP+E EIL  RM DR +RPLF K Y  +TQ+I  ++  D E
Sbjct: 63  REKAAAVGKFPGGYFKREGRPSEKEILTCRMTDRPLRPLFPKGYLYDTQIIGVLLSADGE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
             P ++ +  ASAALM+S +PF GPV   +V  +NGQ++ NP   +   S LDL   G  
Sbjct: 123 VDPDILFINGASAALMVSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADSDLDLVYVGNA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSK 239
             V+M+E   +++ E+  + A+ F   E   ++    +LA+   K   +  +   KD  +
Sbjct: 183 TDVIMIEGAGDEVPEEQFIAALHFAQTEVSKIVALQQELAQKVGKAKRQAALFTVKD--E 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L E    +  + +  + +   K  R K I  LK ++ +   +++    + EI   F+ +Q
Sbjct: 241 LMEVAYAVAGDRIEAAIYNKSKVARQKAIAALKDEVSAAIIAKYPEATKFEISQAFDYLQ 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K  R  +LDK+ R DGR  + +RD+SA+VGLL R+HGS+LF RG+TQA+ + TL   ++
Sbjct: 301 KKAFRVSILDKQTRCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADE 360

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D  +G +    F++HYNF P + GE  R G+P RREIGHG LA R++ PV+P   +
Sbjct: 361 AQELDGYTGGETTKRFILHYNFPPFSVGETGRTGSPGRREIGHGALAERSVEPVIPDVTK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----KDG--DD 472
           FPY +R+ SE+ ES+GS+SMA+VC   LAL+DAGVP+ K VAGI+ GLV     DG  D 
Sbjct: 421 FPYAIRVSSEVMESNGSTSMASVCSGVLALLDAGVPLKKSVAGISCGLVTEFRADGQLDR 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G EDH G MD+K+ GT  G+T  Q+D+K+ GI   +M  A+ + +  R+ +L
Sbjct: 481 YTMLTDIIGSEDHFGDMDWKLCGTRDGVTGFQLDLKLPGIPLKMMEEAIYRTRDARMRVL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M   LS+ R +L ++ PR+E + I PD+I  +IG GGK I+GIV +TGA++NI+DDG+
Sbjct: 541 DVMDSALSQPRTELSKYAPRIETIRINPDKIGLIIGPGGKTIKGIVAETGAEINIEDDGS 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I S++   +  A+++I  +T    V ++Y+G+VV + +FG FV     +DG+VHIS+L
Sbjct: 601 VHIYSNNGDSLLRAKQIIEGMTKEISVGEMYQGRVVTIKEFGCFVEVLPGKDGMVHISEL 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +  RV +  DVVK GD +WVK +  D++G++KLS K   +  G+
Sbjct: 661 ADFRVNRVEDVVKMGDVIWVKCIGVDEKGRVKLSRKAAMKERGE 704


>gi|317487420|ref|ZP_07946208.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
           3_1_6]
 gi|316921352|gb|EFV42650.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
           3_1_6]
          Length = 745

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 308/686 (44%), Positives = 440/686 (64%), Gaps = 11/686 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + LETGR+A Q+ G+V    G TVVL TV   + L   + FFPLTV Y ER YA G+
Sbjct: 16  GKEIILETGRVATQAHGSVTIQCGGTVVLVTVC-SQPLDFDRGFFPLTVEYSERMYAAGR 74

Query: 73  IPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           IPG + RRE  RP+E E L+SR+IDR IRPLF K    + QV+ +V+  D E+   V+S+
Sbjct: 75  IPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLPEDVQVLASVISSDQENESDVLSI 134

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
            AASAA+MLS LPF   V G ++  INGQ++LNP + E  +  L++  + + DA++MVE 
Sbjct: 135 TAASAAVMLSPLPFAEAVAGGRIGRINGQFILNPTVKEMAESDLNIVFAASADALVMVEG 194

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLEEEMSQMI 248
           EA  + EDV++DA+ +G  E +P++EA  KL ++  K  +    +  D + L        
Sbjct: 195 EATFVPEDVIIDALEWGRKEIQPLVEAQVKLRELAGKAKMAFTPQEDDAALLARIEELAA 254

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI----QAKVVR 304
              L  +  +PEK  R      +K+K+V    ++ +   + + +S   DI    + KVVR
Sbjct: 255 GAGLEAAMRVPEKMARKDARKLVKEKIVEALKADPTYGEDEKALSSVGDIIGHIEKKVVR 314

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +LD+  R+DGRD++TVR I  Q G+L R HGS+LF RG+TQ++ V TLG+  D Q +D
Sbjct: 315 KRILDEGTRIDGRDTKTVRPIEIQPGILPRAHGSALFTRGETQSLCVTTLGSSTDNQRMD 374

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           SL+G     FM+HYNF P + GEV  +   SRREIGHG LA +A+ P++P    FP+T+R
Sbjct: 375 SLTGDVTKTFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEKALKPIIPAGDGFPFTVR 433

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +V+E  ES+GSSSMA VCG  L+LMDAGVPIS PVAG+AMGL+K+GD+FI+L+DI GDED
Sbjct: 434 VVAETLESNGSSSMAAVCGGCLSLMDAGVPISDPVAGVAMGLIKEGDNFIVLTDILGDED 493

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFK+AGT  G+TA+QMD+KI G++  IM  A++QA   RLHIL EM K +   R 
Sbjct: 494 ALGDMDFKIAGTAEGVTAVQMDIKITGLTTEIMRKAMRQAHEARLHILGEMKKAIDGPRA 553

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L ++ P+   + + P+ IR +IG GGK I+ I   TGA V+I+D G + I + +   +E
Sbjct: 554 ELSKYAPQHAEVFVNPEVIRMIIGPGGKNIKAITAATGASVDIEDSGRISIFAPTAESME 613

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E+++     P++ K Y G+V KV++ GA V      + LVHISQL T RVA+ SDV 
Sbjct: 614 QAKELVQYYDQRPDLGKNYMGKVRKVLEIGAIVEIMPNVEALVHISQLDTSRVAQASDVA 673

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
             G+ + VK+++ +   +I+ S K V
Sbjct: 674 HLGEDMLVKVIEING-DRIRASRKAV 698


>gi|195978853|ref|YP_002124097.1| polynucleotide phosphorylase/polyadenylase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|226702690|sp|B4U573|PNP_STREM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|195975558|gb|ACG63084.1| polyribonucleotide nucleotidyltransferase PnpA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 714

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/700 (40%), Positives = 441/700 (63%), Gaps = 8/700 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP   + + SL +L V+GT+D
Sbjct: 123 SAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+ MVE  A +L E ++L+A++ GH   + +I    ++     KE   ++    +  L+ 
Sbjct: 183 AINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+ +    DL+ +  + EK  R    + +K+++++ +   +++  E +     +  + E 
Sbjct: 243 EIIETYNADLQQAVQVEEKKAREAATEAVKERVIAAYEERYAADEEHDRIMRDVTEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R ++A++  L   HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPMVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP   
Sbjct: 363 GDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I S
Sbjct: 543 TIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A+E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R 
Sbjct: 603 SDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           A  SDV++ G+ V VK++  DD+G+I  SMK +     KP
Sbjct: 663 ANVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702


>gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK405]
 gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 733

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDIMLEALLKGHQAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQVEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIGATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I S+    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIASLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
 gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
          Length = 693

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/699 (42%), Positives = 455/699 (65%), Gaps = 19/699 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ + ++AG+ LK++ G++A Q+ GA L  YGET VL TVV     K+  DFFPLT
Sbjct: 1   MRQTYSFKKDFAGKTLKIDIGKVAWQATGAALVQYGETTVLVTVVASEEKKEDVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y ER YA GKIPGG+ +RE +PTE EIL +R+IDR +RPLFSK ++NE QVI+ V+ +
Sbjct: 61  VEYVERLYAAGKIPGGFFKREGKPTEPEILFARLIDRPLRPLFSKDFRNEVQVIVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179
           D E+S  + S++ AS A+ML+GLPF+GP+   +V +   ++ +NP +   +   LDL V+
Sbjct: 121 DHENSTDIPSIIGASCAIMLAGLPFKGPIGAVRVGWDGKEWYINPSVALSNSLLLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237
           GT+DAVLM+E +  ++ E++ L+ II  H +   VI    ++  M    P+  + + F  
Sbjct: 181 GTKDAVLMIEGDGKEVPEEIFLEGIIRAHEQIGEVINFQEEILSMV--NPVPFNYEPFVV 238

Query: 238 -SKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
              L++++ + +  D +R + F P K  R K ++DLKK+++ +F   +     GEI +  
Sbjct: 239 NENLKKDVLEYVTVDQIRDAIFTPSKSERQKALEDLKKRVIEHFKPIY-----GEITAQI 293

Query: 296 EDI---QAKVVRT-VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           ++I   +AK + T V+L++K R+DGR    +R +S +VG+L R HGS+LF RG+TQ + V
Sbjct: 294 DEIINQEAKAILTKVILEEKRRVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSV 353

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           VTLG  E EQ ++S+  ++   ++ HYNF P + GE   +  P RREIGHG LA RA+ P
Sbjct: 354 VTLGAGE-EQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIGHGALAERALLP 412

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           ++P+  +FPYT+R+VSE+  S+GS+SMA+VCGSSL+LMDAGVPI   VAG+AMGL+K+G+
Sbjct: 413 LIPKEEEFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGE 472

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +L+DI G ED LG MDFK+AGT +GITA+Q+D+K+ G+S  I+   L+QAK  R  I
Sbjct: 473 KFEVLTDIQGLEDALGGMDFKIAGTKNGITAVQLDIKVDGLSYEIIEKTLKQAKEARYQI 532

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M K +S+ R ++  + PR+ ++ I P++I ++IG  GK I+ I+E+T   +NI  +G
Sbjct: 533 LDIMEKTISQPRPEISPYAPRIMVLEINPNKIGDLIGPSGKNIKKIIEETHTTINIKPEG 592

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I++      E A +M++  T   +   I+ G+V++V D+GAFV     + GL+HIS+
Sbjct: 593 LVYISAPDQESAEKAAQMVQEYTRDIKEGDIFLGKVIRVTDYGAFVEILPGKIGLLHISK 652

Query: 652 LSTERVAK--TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             T    K  T + +  GD + +K+   D  G+I LS K
Sbjct: 653 YKTTGTGKNQTREEINLGDEILIKVDSIDPSGRISLSRK 691


>gi|270308241|ref|YP_003330299.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Dehalococcoides sp. VS]
 gi|270154133|gb|ACZ61971.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Dehalococcoides sp. VS]
          Length = 720

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/701 (41%), Positives = 452/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G+IAR +D AV   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLIIESGKIARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++NE Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  ++V YING++VLNP   + +Q  +DL V 
Sbjct: 121 DKENDADIWGVVGASTVLTMSQIPYEGPVGASRVGYINGEFVLNPTFAQLEQSQMDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T+ AV+M+E  + ++ ED+++ AI F H   + +I+   ++     KE + +   +   
Sbjct: 181 STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  ++  +K  +  +    +K +R   ++ L+ ++V   +    ++ EG+I++ ++  
Sbjct: 241 EVKAAVAAFVKGRVNEALSYQDKTLRENAVEALQSELVEALAE---TYAEGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ G+L R HGS+LF RGDTQ + V TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAVTTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP   +
Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  + D +  ++
Sbjct: 418 FPYTIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +++  A+ QAK  R +IL  M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYNILEVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  ++I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A ++I  +T   E   +Y G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 TDEASAQKAIKIIEDLTKDIEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  D+VK GD + VK+ + D +G++ LS +V+      PI
Sbjct: 658 EKVEDIVKVGDEITVKVTEIDSQGRVNLSRRVILNPNAVPI 698


>gi|322392303|ref|ZP_08065764.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
           ATCC 700780]
 gi|321144838|gb|EFX40238.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
           ATCC 700780]
          Length = 751

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/700 (40%), Positives = 438/700 (62%), Gaps = 8/700 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 21  HVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 79

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 80  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 139

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ 
Sbjct: 140 SAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKH 199

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSE+++L A++ GH   K +I    ++     KE   ++     + L+ 
Sbjct: 200 AINMVESGAKELSEEIMLQALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQA 259

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFED 297
           E+ +    DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E 
Sbjct: 260 EIIEAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQ 319

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + A V  + R HGS LF RG TQA+ ++TL   
Sbjct: 320 MEHAEVRRLITEDKVRPDGRKVDEIRPLDAGVDFVPRVHGSGLFTRGQTQALSILTLAPM 379

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 380 GETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 439

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+
Sbjct: 440 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLT 499

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 500 DIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILAEALAQAKKARFEILDVIEA 559

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I S
Sbjct: 560 TIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 619

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS++S  R 
Sbjct: 620 SDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMSWTRT 679

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +  DVV  GD V VK++  D++G+I  SMK +     KP
Sbjct: 680 NRVEDVVAIGDEVDVKIIKIDEKGRIDASMKALLPRPPKP 719


>gi|225860589|ref|YP_002742098.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230931|ref|ZP_06964612.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254667|ref|ZP_06978253.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|254782741|sp|C1CQ76|PNP_STRZT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225728353|gb|ACO24204.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327390327|gb|EGE88668.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA04375]
          Length = 737

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK330]
          Length = 733

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+ E+  + 
Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVATVGKEKAEVELLHVDEELQAEIIAVY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + K+R DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKIRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK160]
          Length = 733

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/687 (41%), Positives = 432/687 (62%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++    E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYVDHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|73748737|ref|YP_307976.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
           CBDB1]
 gi|289432763|ref|YP_003462636.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
 gi|123759782|sp|Q3ZXV6|PNP_DEHSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|73660453|emb|CAI83060.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
           CBDB1]
 gi|288946483|gb|ADC74180.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
          Length = 720

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/701 (41%), Positives = 455/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G++AR +D A+   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++N+ Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  +++ YING++VLNP   + + S LDL V 
Sbjct: 121 DKENDADIWGVVGASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQLDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T+ AV+M+E  + ++ ED++++AI F H   + +I+   ++     KE + +   +   
Sbjct: 181 STRKAVVMIEAGSKEIPEDIMINAIEFAHKANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  ++  +K  +  +    +K  R   ++ L+ ++V+  S    ++ EG+I++ ++  
Sbjct: 241 EVKTAVAAFVKGRVNEALSHQDKTARENAVEGLQAELVAALSE---TFAEGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ GLL R HGS+LF RGDTQ + + TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP   +
Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  + D +  ++
Sbjct: 418 FPYTIRLVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +I+  A+ QAK  R +IL+ M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  + I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKINIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A ++I  +T   E   IY G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 TDEASAKKAIKIIEDLTKDIEAGSIYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  D+VK GD + VK+++ D++G++ LS +V+      PI
Sbjct: 658 EKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPI 698


>gi|298502383|ref|YP_003724323.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298237978|gb|ADI69109.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 754

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 27  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 86  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 145

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 205

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 265

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 325

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 506 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 626 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 685

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 686 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 719


>gi|315221320|ref|ZP_07863243.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           F0211]
 gi|315189679|gb|EFU23371.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           F0211]
          Length = 726

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/690 (41%), Positives = 439/690 (63%), Gaps = 14/690 (2%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AG+ L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGKELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++S  + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y+NG+ V+NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI- 248
             A +LSE+V+L+A++ GH   K +I    ++  +  KE   ++     +++EE+   I 
Sbjct: 189 SGAKELSEEVMLEALLKGHEAVKELIAFQEEIVAVVGKEKAEVE---LLRVDEELQTEIV 245

Query: 249 ---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300
                DL+ +  + EK  R      +K ++++ +  +++   E      ++  + E ++ 
Sbjct: 246 AGYNADLQKAVQVEEKLAREAATQAVKDEVIALYEEKYADHEEFDRIMRDVAEILEQMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + K+R DGR  + +R + A++  L R HGS LF RG TQA+ V+TL    + 
Sbjct: 306 AEVRRLITEDKIRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGET 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP    FP
Sbjct: 366 QIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEDFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + + + 
Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILQEALAQAKKARFEILDLIERTIP 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 546 APRTELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQ 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I  A+E+I ++    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  K 
Sbjct: 606 DAINRAKEIITALVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNKV 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D+V+ GD V VK++  D++G++  SMK +
Sbjct: 666 EDLVQLGDEVDVKVIKIDEKGRVDASMKAL 695


>gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 728

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/694 (41%), Positives = 434/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDVMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALDQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V V ++  D +G++  SMK +     KP
Sbjct: 669 VQIGDEVDVMVIKIDAKGRVDASMKALLPRPPKP 702


>gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis
           SK36]
 gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus
           sanguinis SK36]
          Length = 733

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/691 (41%), Positives = 438/691 (63%), Gaps = 16/691 (2%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244
             A +LSED++L+A++ GH   K +I    E ++ + K  A+ E + +D +    L+ E+
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKGKAEVELLHVDEE----LQAEI 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQ 299
                 DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++
Sbjct: 245 VAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQME 304

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    +
Sbjct: 305 HAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGE 364

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +F
Sbjct: 365 TQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEF 424

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI
Sbjct: 425 PYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDI 484

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +
Sbjct: 485 QGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATI 544

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS 
Sbjct: 545 PAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSD 604

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R   
Sbjct: 605 QDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNN 664

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV+ GD V VK++  D +G++  SMKV+
Sbjct: 665 VEDVVQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|322388265|ref|ZP_08061869.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           ATCC 700779]
 gi|321140937|gb|EFX36438.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           ATCC 700779]
          Length = 757

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/700 (40%), Positives = 440/700 (62%), Gaps = 8/700 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  +  +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 21  HVFQTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 79

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 80  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 139

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF+GP+ G QV Y++G+ ++NP  ++ + SL +L V+GT+ 
Sbjct: 140 SAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAESSLLELTVAGTKH 199

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSE+++L A++ GH   K +I    ++     KE  V++      +L+ 
Sbjct: 200 AINMVESGAKELSEEIMLQALLKGHEAVKELIAFQEEIVAAVGKEKAVVELLHVDEELQA 259

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFED 297
           E+  +   DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E 
Sbjct: 260 EIIAVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYQEKYANHEEFDRIMRDVAEILEQ 319

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + A V  + R HGS LF RG TQA+ ++TL   
Sbjct: 320 MEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFVPRVHGSGLFTRGQTQALSILTLAPM 379

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 380 GETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLE 439

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+
Sbjct: 440 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLT 499

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 500 DIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEA 559

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I S
Sbjct: 560 TIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYS 619

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R 
Sbjct: 620 SDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRT 679

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
               D+V+ GD V VK++  D++G++  SMK +     KP
Sbjct: 680 NNVEDLVQIGDFVDVKVIKIDEKGRVDASMKALLPRPPKP 719


>gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK355]
          Length = 733

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYTDHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKIDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|172079486|ref|ZP_02707776.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043773|gb|EDT51819.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1873-00]
 gi|301793785|emb|CBW36174.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           INV104]
 gi|332203753|gb|EGJ17820.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA47368]
 gi|332204610|gb|EGJ18675.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA47901]
          Length = 737

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++ Q ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDDQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK353]
          Length = 733

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/687 (41%), Positives = 432/687 (62%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F + ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+DA+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKDAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQAEIVAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|189485170|ref|YP_001956111.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|226704829|sp|B1GZG8|PNP_UNCTG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170287129|dbj|BAG13650.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 689

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 311/684 (45%), Positives = 441/684 (64%), Gaps = 7/684 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E++ AG+   +E+G++A+Q+ G+     GETVVL TVV  +  K G DF PLTV+Y+ERT
Sbjct: 7   EVDVAGKKFIVESGKVAKQAGGSCTVRIGETVVLVTVVSLKEPKVGIDFMPLTVDYRERT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE+RP + E+L+SR+IDRSIRPLF + Y+N+TQ+   V+ HD E+   
Sbjct: 67  YAAGKIPGGFFKRETRPRDGEVLVSRLIDRSIRPLFPEYYRNDTQISAVVLSHDGENDSE 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +++ AS AL  S LPF  P+   ++  INGQ ++NP + E + S LDL VSGT++A+ 
Sbjct: 127 MAAILGASIALYTSDLPFTTPIASVRIGKINGQLIINPLIAEQKLSDLDLVVSGTEEALT 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKDF-SKLEEEM 244
           MVE  A +LSE  +L+A+    N     ++ I    K + AK  IV++     S L+ ++
Sbjct: 187 MVEAGARELSEAEMLEAL----NLAGKTLKGICLFQKTLPAKTKIVVEQPQHNSLLKADI 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                    +S  I EK  R    D  KK + S    ++       I ++ EDI  +  R
Sbjct: 243 EAEAVSKAEMSVVIKEKCEREFFWDSFKKDISSRLLEKYPEELPSTIDAILEDIFYQKAR 302

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L+KK+R DGR  E +R I+ + G+L R HGSSLF RG TQA+V VTLG+  D Q +D
Sbjct: 303 DLVLNKKIRTDGRGFEEIRPITCETGVLPRVHGSSLFTRGQTQALVTVTLGSPCDMQVID 362

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    +  FM+HYNF   ATGE  R  A SRREIGHG LA++A+  ++P    F Y +R
Sbjct: 363 ELIVEYKERFMLHYNFPGFATGEPKRDRAVSRREIGHGNLAKKALKHIMPDGEDFGYAVR 422

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           IVS+I ES+GSSSMA+VCG SLAL +AGVP+    AG++MGL+K+G  ++IL+DI+G ED
Sbjct: 423 IVSDILESNGSSSMASVCGGSLALFNAGVPVKSSCAGVSMGLMKEGGSYVILTDITGMED 482

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QAKRGR  IL++M  V+S  + 
Sbjct: 483 HLGDMDFKVAGTRKGITALQMDIKILGLTTEIVAQALEQAKRGRFFILDQMDAVVSAPKN 542

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            L  + PR+  + IP ++I  +IG GGK IR I E    K++I++ G V I+      ++
Sbjct: 543 DLSNYAPRMITLTIPQNKIGELIGPGGKNIRKIQEDNNVKIDIEETGRVFISGVESDGVK 602

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +A+E +  +T   EV KIYK +V K+M FGAF      ++GL+HISQLS     +  DVV
Sbjct: 603 SAKEYVECLTVEAEVGKIYKSRVTKIMAFGAFAEILPGKEGLIHISQLSNRHTKRVEDVV 662

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
           KEGD V VK+++ D +G+I LS+K
Sbjct: 663 KEGDEVKVKVIEIDKQGRINLSIK 686


>gi|28210966|ref|NP_781910.1| polynucleotide phosphorylase/polyadenylase [Clostridium tetani E88]
 gi|75542500|sp|Q895J3|PNP_CLOTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28203405|gb|AAO35847.1| polyribonucleotide nucleotidyltransferase [Clostridium tetani E88]
          Length = 705

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 300/692 (43%), Positives = 442/692 (63%), Gaps = 13/692 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H +E + AGR LK+E G++   S+ A+L +YG+TVVL      +  +DG DFFPL+V Y+
Sbjct: 3   HVLETDIAGRTLKVEYGKVGMLSNCAILVSYGDTVVLINANASKEPRDGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE RPTEN IL +R IDR +RPLF K Y+N+ Q++  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGRPTENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVESDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +++M  AS AL LS +PF  PV    V  ING ++LNP   + + S L+L VS T++
Sbjct: 123 QPDILAMNGASLALCLSSIPFTTPVANVSVGLINGDFILNPTQSQREESILNLTVSATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIE----AISKLAKMCAKEPIVIDSKDFSK 239
            V+M+E  A ++ ED + +AI FG  +C+ ++E    A+ +  K   +  + +  KD  K
Sbjct: 183 RVMMIEAGAEEVDEDTMYNAIRFGFEQCQKIVEFQEEAMRRFGKEKVEPVLYLVDKDIEK 242

Query: 240 LEEEMS-QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
              E +  M+KE    + +I +K +R ++ID++K+K+   F  ++   N+ +I      +
Sbjct: 243 EVREFAFPMVKE----AMYISDKDLRNEKIDEVKEKVKEEFEEKYPE-NDSDISEALYKM 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q +VVR ++L +K R D R  + +R IS +VGLL RTHG+ LF RG TQ +   T+G   
Sbjct: 298 QKEVVRNMILREKRRPDERAFDEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLA 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +DS+   +   +M HYNF   + GE   +  P RREIGHG LA +A+ P++P    
Sbjct: 358 DVQILDSIEDEEFKRYMHHYNFPSYSVGETRPLRGPGRREIGHGALAEKALEPLIPSEED 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV + D  +  IL
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTNDDLTEEKIL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT+ GITA+Q+D KI G+S+N +   L +AK  R++IL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITALQVDTKISGLSDNCIKETLIKAKDARMYILGKIK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L  + PRV  M I P++IR+VIG GGK I  I+ +TG +++I +DG + + 
Sbjct: 538 ECIPEHRAELSPYAPRVYTMTIAPEKIRDVIGAGGKTINKIIGETGVQIDIKEDGKIYVM 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS       A +MI  +T   E  +IY G+V +  +FGAFV     ++GLVHIS+L   R
Sbjct: 598 SSDSVGANRALKMINDLTKDVEAGEIYLGKVTRTTNFGAFVEILPGKEGLVHISKLDFTR 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K  DVV  GD + VK+ D DD+G+I LS +
Sbjct: 658 VNKVEDVVSVGDEILVKVTDIDDQGRINLSRR 689


>gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 733

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+  + 
Sbjct: 189 SGAKELSEDIMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAVY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
          Length = 711

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/683 (42%), Positives = 441/683 (64%), Gaps = 3/683 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           ++ GR L +E G +A+ ++G+V  +YG+T +L      +  K+G DFFPL+V Y+E+ Y+
Sbjct: 8   DFLGRELCVEVGELAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFYEEKMYS 67

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+L+RE R +E   L  R+IDR +RPLF K ++N+ Q++  VM  D ++SP + 
Sbjct: 68  VGKIPGGFLKREGRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQDNSPEIT 127

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           S++ AS AL +S +PF+GPV    V  I+G+ V NP  D+ D   L L V+GT +AVLMV
Sbjct: 128 SILGASLALGISDIPFDGPVGAVNVGLIDGELVYNPTSDQRDISDLSLTVAGTSEAVLMV 187

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           E  AN++SE++++DAI+  H   K +I+   ++ K    E   I     S+  +E     
Sbjct: 188 EAGANEVSEEIMIDAIMGAHEHIKEIIKFQEEIIKEVGVEKADITYYRTSEEIKEKIYEE 247

Query: 249 -KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            K+  R +  I EK  R  +++++K +++  +  E+   N+ +   +F  +  ++VR ++
Sbjct: 248 AKKGFREAYDIHEKQAREDRVEEVKAEILDKYLEEYPD-NKLDFEEIFAKLLKEIVRGMI 306

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            ++ +R DGR  + +R I+ +VG ++R HGS LF RG TQ + + TLG   DEQ +D + 
Sbjct: 307 TNEGIRPDGRKVDEIRPITCEVGKIRRAHGSGLFTRGQTQVMSMATLGAIRDEQIIDGIG 366

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 ++ HYNF   + GE   M  P RREIGHG LA RA+ PV+P    FPYT+R+VS
Sbjct: 367 EETSKKYIHHYNFPAYSVGETGPMRGPGRREIGHGALAERALLPVIPDQKDFPYTIRVVS 426

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+  S+GS+S A+VCGS+L+LMDAGVPI  PVAGIAMGL+K+ +   +LSDI G ED  G
Sbjct: 427 EVLASNGSTSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIKEENKVSVLSDIQGVEDFYG 486

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  GITA+QMD+KI GI + I+  AL +AK+GR HIL +M + ++  R  + 
Sbjct: 487 DMDFKVAGTSEGITAIQMDIKIKGIDKAILTEALARAKKGRFHILGKMEEAITAPREDVS 546

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           ++ P++  M I  D+I++VIG GGK+I  I+++TG K++I DDG   +++  L + + A 
Sbjct: 547 KYAPKIMTMKIAEDKIKDVIGPGGKMINKIIDETGVKIDILDDGQTFVSAVDLDDAKKAV 606

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++I  IT   E    Y G+V +VMDFGAFV   G ++GLVHIS+++ ERV K +DV+  G
Sbjct: 607 QIIEDITREVEEGDTYVGKVARVMDFGAFVEIPGGKEGLVHISKIAHERVNKVTDVLNVG 666

Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690
           D V VK+++ D +G+I LS K +
Sbjct: 667 DEVNVKVIEIDKQGRINLSRKAL 689


>gi|116328709|ref|YP_798429.1| polynucleotide phosphorylase/polyadenylase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|122283506|sp|Q04ZJ9|PNP_LEPBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116121453|gb|ABJ79496.1| Polyribonucleotide nucleotidyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 696

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 304/689 (44%), Positives = 434/689 (62%), Gaps = 6/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT+  ++    + LETG  A+Q+ GAV+   G  V+LATV      K+GQDFFPLT  Y 
Sbjct: 3   HTISGQYGRDTIVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYT 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y  E Q+ + V+  D + 
Sbjct: 63  EKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S    ++ AAS AL +S +PF GP+ GA++  ING+ +LNP   E   S LDL V+GT+ 
Sbjct: 123 SVAGHALNAASVALTISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLVVAGTKT 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
            ++M+E EA +LS + +L A+ F        +    + AK     K  + + ++D  +L 
Sbjct: 183 HIVMIEGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYAKQIGVVKREVKLKARDV-ELL 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300
            ++ +     L  +   P+K VR K+I ++ K +V +F       ++  +I +   +++ 
Sbjct: 242 AKVKEYAFAKLTAANQTPDKTVRNKEISNVNKDVVEFFKQTVEDADKIKDIKTYLHELEY 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  +L++ VR DGR  + +R IS ++  L   HGSS+F RG TQ++ VVTLGT  D 
Sbjct: 302 EIVREQVLNQGVRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDN 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  ++L G +   FM+HYNF   + GEV R   P RREIGHG LA RA+  VLP++ +FP
Sbjct: 362 QRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479
           Y +R+VSEI ES+GSSSMA+VC  SLALM AGVPI   VAGIAMGL  D    + +LSDI
Sbjct: 422 YVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVAGIAMGLFSDSSGKYAVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G EDH G MD K+AGT  GITA QMD+K+ G+S +++    +QA+RGR HIL+ M K +
Sbjct: 482 AGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKHI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S++   L    PR+ +  IP D+I  +IG GGK +RGI E TGA++ I+DDG V I+ S+
Sbjct: 542 SKASDSLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISGSN 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A +M+       EV KIY+G+V ++ DFGAFV     ++GL HIS++  +RV  
Sbjct: 602 QESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVNS 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             D+VKEGD + VK+L+ D  GKI LS K
Sbjct: 662 VKDIVKEGDIIRVKVLNVDKTGKIDLSRK 690


>gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 733

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIVAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|289423077|ref|ZP_06424892.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156408|gb|EFD05058.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           anaerobius 653-L]
          Length = 696

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 295/697 (42%), Positives = 439/697 (62%), Gaps = 6/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E E AGR L +E G+I   ++G  +  YG+T+++         +DG DFFPL+
Sbjct: 1   MFEHRIFETELAGRKLSVEVGKICEMTNGNCIMRYGDTMLMVNATKSAEPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ Y+VGKIPGG+L+RE + +E  +L SR+IDR IRPLF + ++N+ QV+  V+  
Sbjct: 61  VDFEEKLYSVGKIPGGFLKREGKASEKAVLTSRLIDRPIRPLFPEGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + +P +V+M+ +S AL +S +PF GP     +  ++G++V+NP  ++ +  +L L VS
Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVLIGLVDGEFVVNPTQEQREVSTLHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDF 237
           GT+DA++MVE  A ++ +++VL+AI+F H E K ++  I ++     KE   I +   D 
Sbjct: 181 GTKDAIMMVEAGAEEIDDEIVLNAILFAHEEIKKIVAFIEEIVAAVGKEKCEIKLHLPD- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295
             L  ++    +E +R +    EK  R +++D +  + + YF  E   + E  G+I  V 
Sbjct: 240 EDLRSKVDAFAREKMRAAVKTVEKMERTEKMDAVSAETLEYFEKELEEFEEVAGDIEEVL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            DI    VR++++D+ VR D R  + +R I  + GL+ RTHGS++F RG TQ + V TLG
Sbjct: 300 HDIIKDEVRSLIVDENVRPDNRALDEIRPIWCETGLIPRTHGSAIFTRGQTQVLNVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L       +M HYNF   + GE      P RREIGHG LA RA+ PV+P 
Sbjct: 360 ALGDGQKLDGLDEEDNKRYMHHYNFPAYSVGETRPSRGPGRREIGHGALAERALVPVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPY +R+VSE+  S+GS+S A+VC S+L+L+DAGVPI   VAGIAMGL+K  D   +
Sbjct: 420 QDDFPYAIRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI E ++  AL+QAK GR+HIL EM
Sbjct: 480 LSDIQGMEDHLGDMDFKVAGTEHGVTAIQMDIKIAGIDEQVLRQALKQAKAGRMHILGEM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            KV++E + +L  + P++  M I PD+IR+VIG GGK+I  I+++TG K++I+  G V +
Sbjct: 540 KKVITEPKPELSPYAPKIVKMQINPDKIRDVIGPGGKMINKIIDETGIKIDIEQTGEVFV 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                  I  A  MI  I    E  KIYKG V ++  FGAF+     + GL+HISQ+S +
Sbjct: 600 VGVEQEMINKAISMIEDIVAEAEPGKIYKGTVTRIESFGAFIEILPGKQGLLHISQISNK 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           RV K  DV+  GD V V + + D++ +I LS+K + +
Sbjct: 660 RVEKVEDVLSIGDVVDVLVTEIDNKDRINLSIKAIKK 696


>gi|15900497|ref|NP_345101.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TIGR4]
 gi|81532195|sp|Q97S28|PNP_STRPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|14972063|gb|AAK74741.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           TIGR4]
          Length = 737

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
 gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
          Length = 733

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/692 (41%), Positives = 444/692 (64%), Gaps = 5/692 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + V E ++AGRPLK+ETG+IA+ ++GA    YG+TVV   V      +DG DFFPL
Sbjct: 1   MFENYKVFETDFAGRPLKIETGKIAQLANGACFVRYGDTVVNVAVTASAKPRDGIDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVGKIPG +L+RE RP++  IL SR+IDR IRPLF K  +N+  V+  VM 
Sbjct: 61  SVDFEEKLYAVGKIPGSFLKREGRPSDKAILTSRVIDRPIRPLFPKDMRNDVSVVCTVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D + SP + +MV  SAAL +S +P++GP+ G  V Y++G+YV+NP  ++ + S + + V
Sbjct: 121 VDPDCSPEIAAMVGTSAALSISDIPWKGPISGVSVGYVDGEYVINPTAEQREKSQMAVTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           + T   + M+E  AN++S++V+ + I+ GH   + +IE I  +     K      S +  
Sbjct: 181 ASTDKLIAMIEAGANEVSDEVMYNGIMAGHEANQKIIEFIKGMQAEIGKAKFEYPSNEPD 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            ++   + +   ED++++    +K VR +++  + +K+  +F   +    E +I      
Sbjct: 241 PEMLAAVMEFATEDVKLALDTDDKTVRDERLKPIYEKVHEHFDPIYPEC-EAKIDECMYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q  VVR  +LD++ R+DGR  + +R ++A+VGLL R HGS +F RG TQ I   TLG  
Sbjct: 300 TQKNVVRRWLLDEQKRVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPV 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D+Q +D + G +   +M  YNF   + GE      P RREIGHG LA RA+ PV+P   
Sbjct: 360 SDQQLLDGIDGEEFKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVIPPVE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY  R+VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +G+ ++ + 
Sbjct: 420 EFPYAYRLVSEVVSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGERWMTMV 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  AL++  + R +IL+E + 
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHEGITAIQMDLKIDGLTPEIVKEALEKTHKARDYILDEIIL 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R +L ++ P++  + IP D+IR VIG GGKVI+ I  +   KV++++DG+V I+
Sbjct: 540 KCIPAPRAELSKYAPKMLSITIPVDKIREVIGSGGKVIQKICAECDVKVDVEEDGSVFIS 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            + +     A  ++++I + PEV  IYKG+V ++MDFGAFV     ++GLVHIS+L  +R
Sbjct: 600 GTDIDNCNRALTIVKTIVEDPEVGAIYKGRVTRLMDFGAFVEIAPGKEGLVHISRLDVKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             K +DVV   D V VK+L+ DD+G++ LS +
Sbjct: 660 TEKVTDVVNVDDEVLVKVLEIDDKGRLNLSRR 691


>gi|76789587|ref|YP_328673.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           A/HAR-13]
 gi|237803274|ref|YP_002888468.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|123606542|sp|Q3KKJ7|PNP_CHLTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76168117|gb|AAX51125.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           A/HAR-13]
 gi|231274508|emb|CAX11304.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 695

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 309/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GA+L    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAILVKMNETWVFSSACA-ASLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    + G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+T++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   SD VKEGD + VKLL  +++G++KLS K
Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690


>gi|111657667|ref|ZP_01408397.1| hypothetical protein SpneT_02001144 [Streptococcus pneumoniae
           TIGR4]
          Length = 775

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 744

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 318/710 (44%), Positives = 446/710 (62%), Gaps = 26/710 (3%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M D   V +    GR +  ETGRIA+Q+ G+ +A  G+  VL+TV Y    KDG DFFPL
Sbjct: 13  MLDPKEVSVNLPDGRVITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEE-KDG-DFFPL 70

Query: 60  TVNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           TV Y+E++YA G++PGGY +RE  RP++ EIL +R+IDR IRP+F + +  E QVI+ V+
Sbjct: 71  TVEYREKSYAAGRLPGGYSKREPGRPSDEEILSARIIDRPIRPMFPENFTREVQVIVQVL 130

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
             D + +P V+ + AAS ++ LS LPFE  V   +V  ++GQ ++ P  D+     LDL 
Sbjct: 131 SSDKKFAPDVLGVSAASLSIGLSELPFEQQVAAVRVAVVDGQNIVMPTYDQVAVADLDLV 190

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-- 235
           V+GT+D+V MVE  A ++SED ++ AI+ GH   K + +A  +L   CAK  + +  K  
Sbjct: 191 VAGTEDSVCMVEGGAYEVSEDTMIGAILAGHEVIKQMCKAQQELVDRCAKPKMELKPKFV 250

Query: 236 --DFSKL--------EEEMSQMIKEDLRVSCFIPEKYVRC-KQIDDLKKKMVSYFSSEHS 284
             +  KL         +E+++ +  ++  + F P     C + ++D +   +       +
Sbjct: 251 GEEHDKLVATVKDVVWDELNKDVHSNMVKTDFYPAMADLCARMLEDPRILAIIGEGEAQN 310

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +    +   +F D++   +R ++L++ VR+DGR +  VR I  ++G+L R HGS++F RG
Sbjct: 311 AQLAADAKGIFSDLERTAMREMILNEGVRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRG 370

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ +V+ TLGT+ DEQ  +SL G     +M+HYNF P + GE  ++G  SRREIGHG L
Sbjct: 371 ETQGLVICTLGTKADEQRFESLQGEGAKSYMLHYNFPPFSVGECKKLGL-SRREIGHGHL 429

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A R++  VLP    FPYT+R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAM
Sbjct: 430 AERSLAAVLPLPEDFPYTIRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAM 489

Query: 465 GL------VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           GL      VK+G    ILSDI+G EDHLG MDFKV GT  GITA QMD+KI GI+  +M 
Sbjct: 490 GLISEKGSVKEGGKIKILSDITGTEDHLGDMDFKVTGTAEGITAFQMDIKIRGITPELMR 549

Query: 519 MALQQAKRGRLHILNEMSKV-LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
            AL+QA++GR+HIL  M+++ L   R  + E  P +  M IP  +IR+VIG GG VI+G+
Sbjct: 550 EALEQARQGRIHILGRMAELGLPAPRPHVSEKAPTMLKMRIPTTKIRDVIGSGGSVIKGM 609

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             QTG  +NIDD+G + IA+ +    E  R MI  +T  PE  + YKG+V  +  FGAFV
Sbjct: 610 QAQTGCTINIDDNGNIDIAAPTGKAGEVCRRMIEELTAEPEPGRKYKGKVKTIQPFGAFV 669

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                RDGLVHIS+L+  RV K  DVV  GD V V  L  D +GK+KLSM
Sbjct: 670 EILPGRDGLVHISELADRRVDKVEDVVHVGDEVEVLCLGVDPKGKVKLSM 719


>gi|331266884|ref|YP_004326514.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           Uo5]
 gi|326683556|emb|CBZ01174.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           Uo5]
          Length = 737

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 438/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+++  
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEITEAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLARESATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|148988952|ref|ZP_01820352.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925449|gb|EDK76526.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP6-BS73]
          Length = 775

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|255317984|ref|ZP_05359230.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           6276s]
          Length = 695

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+T++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLASPKETVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   SD VKEGD + VKLL  +++G++KLS K
Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690


>gi|225854123|ref|YP_002735635.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae JJA]
 gi|254782740|sp|C1CCW4|PNP_STRZJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225723734|gb|ACO19587.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae JJA]
          Length = 737

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDLEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|255311683|ref|ZP_05354253.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           6276]
          Length = 695

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+T++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLTSPKETVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   SD VKEGD + VKLL  +++G++KLS K
Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690


>gi|148998264|ref|ZP_01825733.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755907|gb|EDK62951.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP11-BS70]
          Length = 775

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           + GR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FVGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELITFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 287 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK678]
 gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1]
 gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK408]
 gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 733

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+ E+  + 
Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVATVGKEKAEVELLHVDEELQAEIIAVY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + K+R DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKIRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++I+++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDINEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|183603864|ref|ZP_02722383.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
 gi|307067208|ref|YP_003876174.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
 gi|183577765|gb|EDT98293.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
 gi|306408745|gb|ADM84172.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
          Length = 737

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           + GR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FVGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELITFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|307706124|ref|ZP_07642943.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK321]
 gi|307618524|gb|EFN97672.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK321]
          Length = 737

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIISAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 701

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 298/693 (43%), Positives = 443/693 (63%), Gaps = 22/693 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244
           M+E  A ++ ED++++AI+    E K ++E I ++ K   K  +     ++ K  + EE+
Sbjct: 187 MIEAGAKEVPEDIMIEAILIAQEEIKKIVEFIEEIVKEVGKPKM-----EYQKRVVPEEI 241

Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
            Q ++E      +    IP+K  R K++D+LK+++   F  E       E + + +D   
Sbjct: 242 KQKVREIAYDKVYQYVQIPDKVERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR ++ D+  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT
Sbjct: 297 NLEKEIVRKMIADEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + + Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P  
Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD D FI+
Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDDSFIL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKVAGT  GITA+Q+D+KI G++  I+  AL QAK  RL IL+ M
Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +
Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+        A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   
Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    +VVK GD V VK++  D  G++ LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689


>gi|15605577|ref|NP_220363.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|81345334|sp|O84849|PNP_CHLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3329314|gb|AAC68439.1| Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436398|gb|ADH18572.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/9768]
 gi|296437329|gb|ADH19499.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/11222]
 gi|296438257|gb|ADH20418.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/11074]
 gi|297140758|gb|ADH97516.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/9301]
 gi|297748970|gb|ADI51516.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           D-EC]
 gi|297749850|gb|ADI52528.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           D-LC]
          Length = 695

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+T++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   SD VKEGD + VKLL  +++G++KLS K
Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690


>gi|309799898|ref|ZP_07694103.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           SK1302]
 gi|308116488|gb|EFO53959.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           SK1302]
          Length = 740

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ ++TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  A I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQAAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK+L  D++G++  SMK +     KP
Sbjct: 669 VQIGDFVDVKVLKIDEKGRVDASMKALLPRPPKP 702


>gi|315924496|ref|ZP_07920717.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622200|gb|EFV02160.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 693

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 298/686 (43%), Positives = 436/686 (63%), Gaps = 9/686 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E AGRP ++E G +AR +  A +  YG+T +L  V   +  ++G DFFPL+V+Y+E+ 
Sbjct: 5   ETEIAGRPFRVEIGEVARLAKAAAMVRYGDTSLLCNVTVSKKPREGMDFFPLSVDYEEKQ 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+L+RE RP+   IL SR+IDR IRPLF K ++N+  V+  VM  + +++P 
Sbjct: 65  YAVGKIPGGFLKREGRPSNQAILNSRLIDRPIRPLFPKGFRNDVHVVTMVMSVEHDNAPE 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V M+ +S  L +S LPF+GP    QV  I+G++VLNP   + ++  + L V+GT++AV+
Sbjct: 125 LVGMLGSSIVLSISDLPFDGPTAAVQVGLIDGEFVLNPTAAQYEKSEMHLTVAGTREAVM 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEE--- 242
           MVE  A+++ E  +LDAI++ H E K +I  I ++ A++ A +    D K +   EE   
Sbjct: 185 MVEAGADEIPEATMLDAILYAHKEIKKIISFIDQIVAEVGAPKA---DYKLYLPTEEMVT 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E++  I   +  +    +   R + +D L +++  +F+  +   N  +I  V  +++ K 
Sbjct: 242 EITGYIGTRMHDAVRTEDAKERIESMDTLIEEVSEHFAEIYPD-NAADIDMVINNLKKKE 300

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+++LD  +R D R    VR ++ +V  + R HGS+LF RG+TQ   V TLG  ++ Q 
Sbjct: 301 VRSLILDDGIRPDNRGMTQVRPLAVKVDYIPRVHGSALFTRGETQVCSVATLGLLKEAQT 360

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L    +  +M +YNF   + GE      P RREIGHG LA RA+ PVLP    FPY 
Sbjct: 361 LDGLELESKKRYMHNYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEEDFPYA 420

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GS+S A+VCGSS+ALM AGVPI K VAG AMGL+K+ +   IL+DI G 
Sbjct: 421 IRVVSEVMSSNGSTSQASVCGSSMALMAAGVPIKKQVAGCAMGLIKEDEKLAILTDIQGM 480

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT+ GITA+QMD+KI GI   I+  AL QA+ GRL IL  M+  +++ 
Sbjct: 481 EDFLGDMDFKVAGTEDGITAIQMDIKIHGIDREILTKALNQAREGRLFILGVMNDAIAQP 540

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P +  M I P++IR+VIG GG+ I GI + T  K+ I++DGT+ IA++  A 
Sbjct: 541 REELSPYAPHITTMTIDPEKIRDVIGKGGETIIGIQDATDTKIEIEEDGTIYIAATDGAS 600

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A +MI  I    EV  +  G+VVK+M FGAFV   G++DGL+HIS+L+  RV    D
Sbjct: 601 SKKAHDMIFDIVREVEVGDVVTGKVVKIMKFGAFVDIPGSKDGLIHISKLANHRVENVED 660

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
           VV  GD V VK+ + D +G+I LS K
Sbjct: 661 VVSVGDMVTVKVTEIDAQGRINLSRK 686


>gi|116330633|ref|YP_800351.1| polynucleotide phosphorylase/polyadenylase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281612|sp|Q04U27|PNP_LEPBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116124322|gb|ABJ75593.1| Polyribonucleotide nucleotidyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 696

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 303/689 (43%), Positives = 434/689 (62%), Gaps = 6/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT+  ++    + LETG  A+Q+ GAV+   G  V+LATV      K+GQDFFPLT  Y 
Sbjct: 3   HTISGQYGRDTIVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEYT 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y  E Q+ + V+  D + 
Sbjct: 63  EKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S    ++ AAS AL +S +PF GP+ GA++  ING+ +LNP   E   S LDL V+GT+ 
Sbjct: 123 SVAGHALNAASVALTISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLVVAGTKT 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
            ++M+E EA +LS + +L A+ F        +    + AK     K  + + ++D  +L 
Sbjct: 183 HIVMIEGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYAKQIGVVKREVKLKARDV-ELL 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300
            ++ +     L  +   P+K VR K+I ++ K +V +F       ++  +I +   +++ 
Sbjct: 242 AKVKEYAFAKLTAANQTPDKTVRNKEISNVNKDVVEFFKQTVEDADKIKDIKTYLHELEY 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  +L++ VR DGR  + +R IS ++  L   HGSS+F RG TQ++ VVTLGT  D 
Sbjct: 302 EIVREQVLNQGVRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDN 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  ++L G +   FM+HYNF   + GEV R   P RREIGHG LA RA+  VLP++ +FP
Sbjct: 362 QRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479
           Y +R+VSEI ES+GSSSMA+VC  SLALM AGVPI   V+GIAMGL  D    + +LSDI
Sbjct: 422 YVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSDSSGKYAVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G EDH G MD K+AGT  GITA QMD+K+ G+S +++    +QA+RGR HIL+ M K +
Sbjct: 482 AGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKHI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S++   L    PR+ +  IP D+I  +IG GGK +RGI E TGA++ I+DDG V I+ S+
Sbjct: 542 SKASDSLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISGSN 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A +M+       EV KIY+G+V ++ DFGAFV     ++GL HIS++  +RV  
Sbjct: 602 QESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVNS 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             D+VKEGD + VK+L+ D  GKI LS K
Sbjct: 662 VKDIVKEGDIIRVKVLNVDKTGKIDLSRK 690


>gi|322517679|ref|ZP_08070542.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123667|gb|EFX95259.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis ATCC 49124]
          Length = 745

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 288/693 (41%), Positives = 433/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+ +AGRPL +E G +A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY+
Sbjct: 4   QTFEMTFAGRPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATA-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   D+D   LDL V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQLDLTVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++     ++L+ 
Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDAELKV 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+     + L  +  + EK  R      +K+++++ +    +   + E     +V + E 
Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLTSYQERFAEDEDKETILRDVVEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSIE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRRGITALQMDIKISGITPAILEEALAQAKVARFEILDVIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I S
Sbjct: 543 VIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ ER 
Sbjct: 603 SDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWERT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +  DVVK GD V VK++  D++G+I  S+K +
Sbjct: 663 ERVEDVVKVGDMVTVKIIKIDEKGRIDASIKTL 695


>gi|306825739|ref|ZP_07459078.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432100|gb|EFM35077.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 754

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 435/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 27  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 86  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 145

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 205

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 265

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E E     +  + E ++   V
Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFERIMRDVAEILEQMEHAEV 325

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 506 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 626 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 685

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 686 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 719


>gi|169833588|ref|YP_001694072.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226703873|sp|B1IAA9|PNP_STRPI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168996090|gb|ACA36702.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 737

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++++ +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQTVKDQVIAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|319939878|ref|ZP_08014233.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319810889|gb|EFW07208.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 726

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/690 (41%), Positives = 438/690 (63%), Gaps = 14/690 (2%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AG+ L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGKDLVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F+  ++NE QVI  V+ +D ++S  + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFADGFRNEVQVINTVLSYDADASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y+NG+ V+NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI- 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     +++EE+   I 
Sbjct: 189 SGAKELSEELMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVE---LLRVDEELQTEIV 245

Query: 249 ---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300
                DL+ +  + EK  R      +K ++++ +  +++   E      ++  + E ++ 
Sbjct: 246 AGYNADLQKAVQVEEKLAREAATQAVKDEVIALYEEKYAEHEEFDRIMRDVAEILEQMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + K+R DGR  + +R + A++  L R HGS LF RG TQA+ V+TL    + 
Sbjct: 306 AEVRRLITEDKIRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGET 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FP
Sbjct: 366 QIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTILTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + + + 
Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILQEALAQAKKARFEILDLIERTIP 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 546 APRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQ 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I  A+E+I ++    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  K 
Sbjct: 606 DAINRAKEIIAALVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNKV 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D+V+ GD V VK++  D++G++  SMK +
Sbjct: 666 EDLVQLGDEVDVKIIKIDEKGRVDASMKAL 695


>gi|315612684|ref|ZP_07887596.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315315271|gb|EFU63311.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 754

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 27  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 86  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 145

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 205

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 265

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAGILEQMEHAEV 325

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAVVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 506 DHFGDMDFKVAGTREGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 626 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 685

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G+I  SMKV+     KP
Sbjct: 686 VAIGDEVDVKVIKIDEKGRIDASMKVLLPRPPKP 719


>gi|167765957|ref|ZP_02438010.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
 gi|317498464|ref|ZP_07956758.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167712360|gb|EDS22939.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
 gi|291558981|emb|CBL37781.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SSC/2]
 gi|316894157|gb|EFV16345.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 696

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 302/692 (43%), Positives = 438/692 (63%), Gaps = 19/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L +E GR+A Q++GA    YG+TVVL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLMVEVGRVAAQANGAAFMHYGDTVVLSTATASEKPRDGIDFFPLSVEYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGGYL+RE +P+EN IL  R+IDR +RPLF K Y+N+  +   VM  D + SP +
Sbjct: 67  AVGKIPGGYLKREGKPSENAILTDRVIDRPMRPLFPKDYRNDVALNNLVMSVDPDCSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP     V  I+G++V+NP   + + S L L V+ T++ V+M
Sbjct: 127 TAMLGSAIATAISDIPFDGPTASTMVGLIDGEFVINPTSAQKEVSDLALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEE 242
           +E  AN++ EDV+L+AI   H   + +I+ I  +   C KE       ++D + +  +  
Sbjct: 187 IEAGANEVPEDVMLEAIFKAHEVNQEIIKFIDTIVAECGKEKHDYEHHIVDPEMYDDM-- 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDIQA 300
            ++ +  E +  + F  +K  R   I  +++K+   + +E+  W    GE V  F   Q 
Sbjct: 245 -VAFITPEAMEEAVFTDDKQTREANIRAIEEKLEERY-AENEEWLAQIGEAVYAF---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGRD + +R + A+V  L R HGS+LF RG TQ + V TLG+  + 
Sbjct: 300 KTVRKMILKDHKRPDGRDIKQIRPLHAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D +  T+    +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QRLDGIDVTETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSEI ES+GS+S  ++C SSL+LM AGVP+  PVAGI++GLV  +  DD+IIL+
Sbjct: 420 PYAIRTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGEGDDDYIILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGTD GITA+QMD+KI G++E I+  A+ + K  R HIL++ M+
Sbjct: 480 DIQGLEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTEQIIREAIARTKEARTHILHDVMN 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+  +R  +GEF P++    I P++I  VIG  GK I GI+++TG K++ID+ G + I 
Sbjct: 540 PVIPAARDHVGEFAPKISQYTIDPEKISEVIGKQGKTINGIIDETGVKIDIDESGRIDIL 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S   A I+ A  +I+SI +   V  IY+G+VV++M+FGAFV     +DG++HIS+LS ER
Sbjct: 600 SEDQAMIDKAISIIKSIVEPLNVGDIYEGEVVRIMNFGAFVQLSPNKDGMIHISKLSNER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K  DVV  GD V VK+L+ D  G+I L ++
Sbjct: 660 VEKVEDVVNIGDKVAVKVLEIDKMGRINLKLE 691


>gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK49]
          Length = 733

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/687 (41%), Positives = 431/687 (62%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRDLVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIIVAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  ++    E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYVDHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR    +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVNEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha275]
          Length = 579

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/581 (49%), Positives = 398/581 (68%), Gaps = 8/581 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A      P V D K    
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV--NPEVWDWKAPET 238

Query: 240 LEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVF 295
            EE   ++ ++  E ++ +  I +K  R  ++D+    +  +  + E  +    EI  +F
Sbjct: 239 NEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLG
Sbjct: 299 KHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+
Sbjct: 359 TSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPK 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 PEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
              ++  + +L    PR+  M I  D+IR VIG GG+ IR 
Sbjct: 539 KAAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRA 578


>gi|307710641|ref|ZP_07647074.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK564]
 gi|307618584|gb|EFN97727.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK564]
          Length = 737

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQTEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYCAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|166154186|ref|YP_001654304.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           434/Bu]
 gi|166155061|ref|YP_001653316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335431|ref|ZP_07223675.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           L2tet1]
 gi|226702634|sp|B0B971|PNP_CHLT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702636|sp|B0BAV0|PNP_CHLTB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|165930174|emb|CAP03658.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           434/Bu]
 gi|165931049|emb|CAP06612.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 695

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 443/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +   F P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVGFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    + G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +  LL RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPLLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+T++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   SD VKEGD + VKLL  +++G++KLS K
Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690


>gi|293364915|ref|ZP_06611632.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
 gi|291316365|gb|EFE56801.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
          Length = 754

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 27  FAGRELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 85

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 86  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPMAA 145

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 146 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 205

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 206 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 265

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 266 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 325

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 326 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 385

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 386 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 445

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 446 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 505

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 506 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 565

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 566 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 625

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 626 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 685

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 686 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 719


>gi|183603099|ref|ZP_02710211.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571256|gb|EDT91784.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1087-00]
          Length = 737

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  ++
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVENL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|307704339|ref|ZP_07641256.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK597]
 gi|307622099|gb|EFO01119.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK597]
          Length = 737

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|332076425|gb|EGI86888.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA41301]
          Length = 737

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 439/694 (63%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFIHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|312867935|ref|ZP_07728139.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis F0405]
 gi|311096339|gb|EFQ54579.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis F0405]
          Length = 740

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++G+ V+NP  ++ + SL +L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGEIVINPTQEQAEHSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ ++TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 702


>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
 gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
          Length = 721

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 305/693 (44%), Positives = 443/693 (63%), Gaps = 18/693 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H       GR L +ETG+ ARQ+ G+V   YGET+V+AT    +   D   F PLTV ++
Sbjct: 12  HRFSAVLGGRELVIETGKYARQASGSVWVRYGETIVMATAEGSKEPID-MPFLPLTVEFE 70

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA+GKIPG ++RRE RP E  IL +RM DR IRPLF K +++E QVI+ V+  D ++
Sbjct: 71  ERHYAIGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVILTVLAADQQN 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+  +AASAALMLS +P++GP+   +V  +NG+ VLNP L + D+  LDL V+G++D
Sbjct: 131 PPDVLGPLAASAALMLSDVPWDGPIASVRVGRVNGELVLNPTLQQLDESDLDLIVAGSKD 190

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI-------EAISKLAKMCAKEPIVIDSKD 236
           A++MVE  A ++SED++++A+ F H E +P+I       E + K     +  P + D + 
Sbjct: 191 AIIMVEAGAKEVSEDLLVEALDFAHREMQPLIALQEEMREKLGKPKFAWSPPPTLTDEE- 249

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVS 293
              LE      I+  L+       K+ R + +D  +  +V+    E     E        
Sbjct: 250 ---LEAFYRLAIERGLKDVLLTASKHERAEALDAFRDALVAEIVPEEDEDAEVRRALYKQ 306

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F D+  + +R +++++K R DGR    +R I  +V +L R+HGS++F RG+TQ +  VT
Sbjct: 307 AFGDVTKRELRRMIVEEKKRADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVT 366

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D L   +  DF++HYNF P +TGEV R+   SRRE+GHG LA+RA+ P+L
Sbjct: 367 LGTGRDEQIIDDLGLDESEDFLVHYNFPPYSTGEVKRLRGVSRREVGHGNLAKRALKPML 426

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P+   FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVPI KPVAGIAMGLVK  + +
Sbjct: 427 PEKDAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIKKPVAGIAMGLVKPEEGE 486

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            ++L+DI G ED LG MDFKV GT  G+TA+QMD+K+ G+   +M  AL+QA+  RL IL
Sbjct: 487 PVVLTDILGMEDALGDMDFKVTGTRDGVTALQMDIKVQGLDAAVMRRALEQARAARLAIL 546

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M +VL E R +L  F PR+  + IP D+I  VIG GGK IR + E+ G  ++I++DGT
Sbjct: 547 DQMEQVLPEPRRELKPFAPRILALKIPVDKIGAVIGPGGKNIRAL-EELGVSIDIEEDGT 605

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V+I S+     E A+  I ++T   +V ++Y+G VV+  +FGAF+      +GL+HISQ+
Sbjct: 606 VRIYSAEGGAAEEAKARIENLTREAKVGEVYEGVVVRTTNFGAFIQLFPGTEGLLHISQI 665

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           + ERV K  D +K GD + VK+   D++G++ L
Sbjct: 666 AEERVDKVEDHLKVGDKITVKVNRIDEKGRVDL 698


>gi|322390877|ref|ZP_08064385.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142390|gb|EFX37860.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 903]
          Length = 740

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/694 (40%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++G+ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDTDLQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ ++TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAQVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SM+ +     KP
Sbjct: 669 VAIGDEVDVKIIKIDEKGRVDASMRALLPRPPKP 702


>gi|322377809|ref|ZP_08052298.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
 gi|321281232|gb|EFX58243.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
          Length = 737

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++  +  + L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLRVDADLQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 733

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/687 (41%), Positives = 432/687 (62%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ +L      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTILTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F + ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEISLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+    
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQAEIVAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|296877279|ref|ZP_06901319.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431799|gb|EFH17606.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 785

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 55  FAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 113

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 114 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 173

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++G+ ++NP  ++ + SL +L V+GT+ A+ MVE
Sbjct: 174 MFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAERSLLELTVAGTKHAINMVE 233

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 234 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDADLQAEIIAAY 293

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 294 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 353

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 354 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 413

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 414 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 473

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 474 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 533

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 534 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 593

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 594 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 653

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 654 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 713

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 714 VAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 747


>gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
 gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
          Length = 722

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/693 (42%), Positives = 447/693 (64%), Gaps = 16/693 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T +  +AGR L +ETG+ +  ++G+    YGETVV+A V      ++G DFFPL+V+Y+
Sbjct: 25  RTFQTMFAGRELIVETGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVDYE 84

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPG +L+RESRP+E  IL SR+IDR IRPLF K  +N+  V+  V+  D+++
Sbjct: 85  EKLYAVGKIPGSFLKRESRPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVLATDVDN 144

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           SP VV+M A + A+ +S +P+ GPV    V  ++G++VLNP ++E   S LDL V+ + +
Sbjct: 145 SPEVVAMTAVAIAISISDIPWNGPVASVSVGLVDGKFVLNPNIEERAKSDLDLTVASSGE 204

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
            ++M+E  AN++ +  +LDAI+ GH E K +I+ I+++     K  I  +S +  ++L +
Sbjct: 205 KIVMIEAGANEVDDKTMLDAIMTGHEELKHIIDFINEIKAEVGKPKIEFESMEVPTELFD 264

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFED--- 297
            + +M  + ++ +    +K VR        ++++      H+ ++E   E + V ++   
Sbjct: 265 AIKEMAIDRVKEALDTDDKTVR-------DERLLPIIGDIHAKFDELYPEQIPVIDECIY 317

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +Q  VVR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG 
Sbjct: 318 KLQKYVVRRWLLDEQKRVDGRGMDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGP 377

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D +       +M +YNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 378 VSDEQRLDGIDENTFKRYMHNYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSE 437

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+ +GD F+ +
Sbjct: 438 EEFPYAIRVVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGDRFMTM 497

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
            DI G ED  G MDFKV GT  GITA+Q+D+KI G++  I+  A ++ ++ RL+IL+E M
Sbjct: 498 VDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKIDGLTPEIIAEAFEKTRKARLYILDEIM 557

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K L + R ++ ++ P++    IP D+IR+VIG GGKVI+ I  +   K++I++DG V I
Sbjct: 558 LKALHKPREEVSKYAPKMLQTVIPIDKIRDVIGTGGKVIQKICAEYDVKIDINEDGHVFI 617

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
               +A  ++A  ++ +I   PE+  IYKG+V ++++FGAFV     ++GLVHIS+L   
Sbjct: 618 LGVEMANAKSALAVVETIAKDPEIGAIYKGKVTRILNFGAFVEIAPGKEGLVHISKLDFH 677

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV EGD V VK+++ DD+G+I LS K
Sbjct: 678 RVEKVQDVVNEGDEVVVKVVEIDDQGRINLSRK 710


>gi|307708303|ref|ZP_07644770.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
           12261]
 gi|307615749|gb|EFN94955.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
           12261]
          Length = 737

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++   +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTVVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 702


>gi|218437998|ref|YP_002376327.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7424]
 gi|226702644|sp|B7KIQ3|PNP_CYAP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218170726|gb|ACK69459.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7424]
          Length = 718

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 303/695 (43%), Positives = 447/695 (64%), Gaps = 20/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T     S ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKAAS-REGVDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILISR+IDR +RPLF    +++ QVI   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPHWLRDDIQVIATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGASLAVILAEIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-----AKMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I A   +      K+   +P  ++      ++ 
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIAAQQDVMETLGVKLATLDPPPVNESVLEFIKT 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH----SSWNEGEIV-S 293
           + +  IK+ L  S +  +K  R   +D++K    +++++    E     ++  E ++V +
Sbjct: 247 QTADEIKKVL--SQYDLDKNGRDTALDEIKAAKVEEVIASLPEEDPIKVATTEEAKLVDT 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
           +F+D+  K++R+ ++++ VR+DGR  + VR IS +VGLL  R HGS LF RG TQ + + 
Sbjct: 305 LFKDVTKKLMRSQIINEGVRVDGRQLDQVRPISCRVGLLPPRVHGSGLFCRGLTQVLSIA 364

Query: 353 TLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q   D L       ++ HYNF P + GE   M +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQELADDLHPEDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAILP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+KDGD
Sbjct: 425 VLPTQQEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIKDGD 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +I+  A++QA+  RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDNGITALQMDMKITGLSMDIVAKAIEQARPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M  V+   R +L  + PR+  M I PD I  VIG GGK ++ I EQT  K++IDDDG
Sbjct: 545 LDKMLSVIDSPRPELSPYAPRLLTMRIDPDMIGLVIGPGGKTVKSITEQTKTKIDIDDDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV I++S   + E A+++I ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTISASEAEQAERAKQLIHNMTRKLNEGEVYVGRVTRIIQIGAFVEIMPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV K  D +  GD V VK+ + D++G++ L+
Sbjct: 665 LAEGRVGKVEDELAVGDEVVVKVREIDNKGRLNLT 699


>gi|255507465|ref|ZP_05383104.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           D(s)2923]
 gi|289525888|emb|CBJ15370.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           Sweden2]
 gi|296435474|gb|ADH17652.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           E/150]
 gi|296439191|gb|ADH21344.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           E/11023]
          Length = 695

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 308/701 (43%), Positives = 443/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KNKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI+FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+T++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   S  VKEGD + VKLL  +++G++KLS +
Sbjct: 650 HISELSKQKVDNISGFVKEGDKLAVKLLSINEKGQLKLSHR 690


>gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 749

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/700 (42%), Positives = 446/700 (63%), Gaps = 8/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M D++ V I      L  ETG++A+Q++G+V A  G+TV+L T       ++G DFFPL 
Sbjct: 1   MQDIYRVRI--GEEELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLL 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++ER Y+ GKIPGG+++RE RP++  IL +R+IDRSIR LF    +++  V+  V+  
Sbjct: 59  VDFEERFYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P+++++ AASAAL +S +P+ GPV   ++ YI+G  V+NP  +  +  SL+L VS
Sbjct: 119 DQHNPPNILAINAASAALTISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSLELVVS 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           G  D + MVE  A ++ ED+++DA+     E K +++   ++ +   K+ IVID      
Sbjct: 179 GHSDGITMVEAGAQEVPEDLLVDAMELAQGEIKRIVDLQLRMREEIGKDKIVIDPPVRVP 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  +   +K D+  +  I +K  R   I  L+ +   +F+ E      G I    E  
Sbjct: 239 EIDCWVETNLKSDIAEAVMIHDKKQRGAAIRALEDRAREHFAEEFPD-KGGYISGAVEHW 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR- 357
              ++R + + +K R DGR ++ +R +S +V +L + HGS++F RG+TQ++   TLG   
Sbjct: 298 VKAMMRKITVTEKRRADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLG 357

Query: 358 EDEQYVDSLSGTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ED+Q +D L   + N  F++HYNF P + GEV  M  P RREIGHG LA RA+ P++P  
Sbjct: 358 EDDQLIDGLKHNEPNKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALTPIIPDD 417

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VS+I ES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+GDD ++L
Sbjct: 418 TEFPYVVRVVSDILESNGSSSQASICGGSLALMSAGVPIKRHVAGIAMGLIKEGDDVVVL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  G+TA+QMD K GGI+  I+  AL QAK  R+ IL+ M 
Sbjct: 478 TDIQGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITREILKQALGQAKDARMAILDVME 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +S     L    PR+  M I  D+IR+VIG GGKVIRGI ++TGAKVNIDDDG + IA
Sbjct: 538 QAISNPG-DLSPNAPRMYTMMINVDKIRDVIGPGGKVIRGITQETGAKVNIDDDGQILIA 596

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +S  E+ AA +MI  I    +  ++++G+V ++M FGAFV     ++GL+H+S++ST R
Sbjct: 597 GASQEEVNAAIKMIDDIVREVQAGEVFQGKVTRLMAFGAFVEVLPGKEGLLHVSEISTHR 656

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V K  DV K GD V V + + DD G+I L+ K +  +  K
Sbjct: 657 VGKVEDVFKPGDPVLVMVREIDDMGRINLTRKKILADEAK 696


>gi|312862624|ref|ZP_07722865.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis F0396]
 gi|311101884|gb|EFQ60086.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis F0396]
          Length = 745

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 433/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+ +AGRPL +E G +A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY+
Sbjct: 4   QTFEMTFAGRPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATA-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   D+D   LDL V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQLDLTVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++     ++L+ 
Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDAELKV 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+     + L  +  + EK  R      +K+++++ +    +   + E     +V + E 
Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQTVKEEVLASYQERFAEDEDKETILRDVVEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  F+ HYNF   + G+  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 SDTQLIDGLDPEYKKRFLHHYNFPQYSVGDTGRYGAPGRREIGHGALGERALAQVLPSVE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRRGITALQMDIKISGITPAILEEALAQAKVARFEILDVIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I S
Sbjct: 543 VIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ ER 
Sbjct: 603 SDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWERT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +  DVVK GD V VK++  D++G+I  S+K +
Sbjct: 663 ERVEDVVKVGDMVTVKIIKIDEKGRIDASIKTL 695


>gi|270293225|ref|ZP_06199436.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
 gi|270279204|gb|EFA25050.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
          Length = 775

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 48  FAGRELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 107 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 167 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 227 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 286

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQAKVV 303
             +L+ +  + EK  R      +K ++ + +  +++   E +     +  + E ++   V
Sbjct: 287 NSELQKAVQVEEKLAREAATQAVKDQVTAVYQEKYADHEECDRIMRDVAEILEQMEHAEV 346

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 347 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 406

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 407 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 466

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 467 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 526

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 527 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 586

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 587 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 646

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 647 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 706

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 707 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 638

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/638 (44%), Positives = 423/638 (66%), Gaps = 6/638 (0%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  
Sbjct: 1   MNYEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSA 60

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+
Sbjct: 61  DPDCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVA 120

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDF 237
           G +DAV MVE  A++++E  +L+AI FGH E + +++   ++       K+  +   +D 
Sbjct: 121 GHKDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDE 180

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSV 294
           + +E   S   ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++
Sbjct: 181 ALVERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAI 240

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TL
Sbjct: 241 LNELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTL 300

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P
Sbjct: 301 GALGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIP 360

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            TA FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + 
Sbjct: 361 DTADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYT 420

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N 
Sbjct: 421 ILTDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNH 480

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ 
Sbjct: 481 MLQTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIF 540

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S 
Sbjct: 541 IGAVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISK 600

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            R+ K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 601 NRIEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 638


>gi|307703168|ref|ZP_07640114.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
 gi|307623243|gb|EFO02234.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
          Length = 737

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 435/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+    + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKVVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 609 NRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|170756696|ref|YP_001781955.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           B1 str. Okra]
 gi|226702639|sp|B1II43|PNP_CLOBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169121908|gb|ACA45744.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B1
           str. Okra]
          Length = 702

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
           + V+MVE    ++ E+ +  AIIFG  ECK ++    EA++K  K    EP++  + +  
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIIFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    
Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYEDKG-ADIAEVIYKT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  +D +   ++
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG + + 
Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597

Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   
Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|289168431|ref|YP_003446700.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
 gi|288907998|emb|CBJ22838.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
          Length = 737

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 435/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQSEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           DP4]
 gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           RCH1]
          Length = 760

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 312/705 (44%), Positives = 452/705 (64%), Gaps = 26/705 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+   V     G+ +  ETGR+A Q+DGAV    G TVVL T     + +D   FFPLT
Sbjct: 4   IFNAMRVTATVGGKEIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDRD-LGFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR IRPLF K  K+E QV+ NV+ 
Sbjct: 63  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVIS 122

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D  +   V+++  AS AL LS +PF+GPV GA++  I+GQ+V+NP + E ++  L++ +
Sbjct: 123 SDQNNDSDVLAVTGASTALGLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLNIVL 182

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++DAV+MVE EA+ + E V+++A+ +GH E +P+I+A  KL +M  K       ++F+
Sbjct: 183 AASRDAVVMVEGEASFVPEAVIVEALEWGHKEIQPLIDAQLKLREMAGKA-----KREFT 237

Query: 239 KLEEEMSQMIKE------DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---- 288
              E+     +       DL V+  IPEK  R      +K+K++    ++ +   +    
Sbjct: 238 APVEDADLAARVAALATADLDVALRIPEKMARKDARKAVKEKVMEALVADPAYAEDTTPL 297

Query: 289 ---GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
              G+I+S  E    ++VR  ++ +  R+DGRD+ TVR I  + G+L R HGS+LF RG+
Sbjct: 298 RAVGDILSALEK---RIVRERIVREGRRIDGRDTTTVRPILIEAGILPRAHGSALFARGE 354

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           T+++VV TLG+  DEQ +DSL+G     FM+HYNF P   GEV  +   SRREIGHG LA
Sbjct: 355 TKSLVVATLGSSTDEQRMDSLTGDVTKRFMLHYNFAPYCVGEVKPVRV-SRREIGHGALA 413

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            +A+ P+LP    FP+TLR+V+E  ES+GSSSMA VCG  L+LMDAGVPI+ PVAG+AMG
Sbjct: 414 EKALRPILPLGEDFPFTLRVVAETMESNGSSSMAAVCGGCLSLMDAGVPITAPVAGVAMG 473

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           L+K+GD +++L+DI GDED LG MDFK+AGT  GITA+QMD+K+ G+  ++M  A+QQA+
Sbjct: 474 LIKEGDQYVVLTDILGDEDALGDMDFKIAGTSEGITAVQMDIKVKGLPTDVMARAMQQAR 533

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             RLHIL EM KVL   R +L  + P+   + + PD IR +IG GGK I+ I   TGA +
Sbjct: 534 DARLHILGEMGKVLEAPRAELSAYAPQHAEVFVNPDIIRIIIGPGGKNIKAITATTGASI 593

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I+D G V I + +L  +E AREM++      ++ K Y G+V KV++ GA V      + 
Sbjct: 594 DIEDSGRVSIFAPTLEAMEMAREMVQYYDQRADIGKNYTGKVRKVLEIGAIVEILPNLEA 653

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           LVHISQL T RV + SDV + G+ + VK+++ +   +I+ S K V
Sbjct: 654 LVHISQLDTNRVEQASDVARLGEDMVVKVIEING-DRIRASRKAV 697


>gi|237805195|ref|YP_002889349.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273495|emb|CAX10411.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 695

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 308/701 (43%), Positives = 442/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GA+L    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAILVKMNETWVFSSACA-ASLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    + G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+ ++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPEISRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   SD VKEGD + VKLL  +++G++KLS K
Sbjct: 650 HISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHK 690


>gi|306829036|ref|ZP_07462227.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304428841|gb|EFM31930.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 737

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/694 (41%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGKVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQTEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREVATQAVKDQVTAVYQEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|319946257|ref|ZP_08020497.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319747639|gb|EFV99892.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 783

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/694 (40%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 55  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 113

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 114 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 173

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ +Q  L+L V+GT+ A+ MVE
Sbjct: 174 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTKHAINMVE 233

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+ E+    
Sbjct: 234 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQAEIIAAY 293

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 294 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 353

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ ++TL    + Q +
Sbjct: 354 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQII 413

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 414 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 473

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 474 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 533

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + E R
Sbjct: 534 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEVTIPEVR 593

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 594 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 653

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R  +  D+
Sbjct: 654 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNRVEDL 713

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+ GD V VK++  D++G++  SMK +     KP
Sbjct: 714 VEIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 747


>gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK115]
 gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK150]
          Length = 733

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/687 (41%), Positives = 433/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP + +
Sbjct: 69  GKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+  + 
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVKELIAFQEEIIAAVGKEKAEVELLHVDEELQAEIIAVY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + K+R DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL    + Q V
Sbjct: 309 RRLITEDKIRPDGRKVDEIRPLDAEVDYLPCVHGSGLFTRGQTQALSVLTLAPMGETQIV 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +   R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIAGITAEILTEALAQAKKARFEILDLIEATIPAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R     DV
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNVEDV 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ GD V VK++  D +G++  SMKV+
Sbjct: 669 VQIGDEVDVKVIKIDAKGRVDASMKVL 695


>gi|255349247|ref|ZP_05381254.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           70]
 gi|255503784|ref|ZP_05382174.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           70s]
          Length = 695

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 308/701 (43%), Positives = 442/701 (63%), Gaps = 27/701 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KNKTLIFETGKIARQASGAVLVKMNETWVFSSACA-ASLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+      K+FS +
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ------KNFSAV 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDD----------LKKKMVSYF-SSEHSSWN 287
            +     + ED++  VS FI EK+ +     D          L++ +++     E+S ++
Sbjct: 235 LD-----MPEDVQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFS 289

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F+  ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ
Sbjct: 290 LLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQ 349

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ V TLG     Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +
Sbjct: 350 SMAVCTLGGENMAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEK 409

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP+T++FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+
Sbjct: 410 ALSHVLPETSRFPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLI 469

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D  IILSDISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+G
Sbjct: 470 LDRDQAIILSDISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQG 529

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HILN M++VL+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I
Sbjct: 530 RSHILNLMTQVLASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDI 589

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG + IA+S+   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL 
Sbjct: 590 NDDGVINIAASTQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLC 649

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           HIS+LS ++V   S  VKEGD + VKLL  +++G++KLS +
Sbjct: 650 HISELSKQKVDNISGFVKEGDKLAVKLLSINEKGQLKLSHR 690


>gi|291166373|gb|EFE28419.1| polyribonucleotide nucleotidyltransferase [Filifactor alocis ATCC
           35896]
          Length = 726

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 301/694 (43%), Positives = 452/694 (65%), Gaps = 4/694 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+    R LK+E G++A  ++GA L + G+TVVL T       ++G DFFPL+V+++ER 
Sbjct: 6   EMPLGNRQLKIEIGKVAELANGACLVSCGDTVVLVTATNSALPREGIDFFPLSVDFEERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE RP+E  IL SR+IDR IRPLF K ++N+ QV+  V+  + + +P 
Sbjct: 66  YSVGKIPGGFIKREGRPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVEPDVTPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PF GP     V  I+GQ +LNP +D+   S L L VSGT+DA++
Sbjct: 126 VLAMIGSSIALSISSIPFNGPTGSVAVGLIDGQLILNPDVDQRAASDLHLTVSGTKDAIM 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMS 245
           MVE  AN+++E  +L+AI++ H E K ++  I  + +   KE +  +  K   ++E  + 
Sbjct: 186 MVEAGANEVTERTMLEAILYAHEEIKKIVSFIETIVEEVGKEKMEYVVFKADEQIESHVL 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           +  KE ++ +    +K  R + +D  +++++ +F+ E    N  ++      I  + +R 
Sbjct: 246 EYGKEKMKAAILTKDKTERMENMDKARQEIMEHFA-EIYPENIKDVEETIYKITKEGIRE 304

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L  ++R D R  + +R IS +VG L RTHGS++F RG TQ + V TLG   + Q +D 
Sbjct: 305 LILVDRIRPDNRSMDEIRPISCEVGTLPRTHGSAIFTRGQTQVMSVTTLGALGEMQTLDG 364

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       +M HYNF   + GE      P RREIGHG LA RAI P+LP   +F Y +R+
Sbjct: 365 LDENIEKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERAILPMLPSKEEFAYAIRV 424

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSE+  S+GS+S A+VCGS+L+L+DAGVP+ + VAGIAMGL+K+ +   ILSDI G ED 
Sbjct: 425 VSEVMSSNGSTSQASVCGSTLSLLDAGVPMKRMVAGIAMGLIKEDEHLAILSDIQGMEDF 484

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT+ GITA+QMD+KI GI E I+  AL+QA++GRL ILN+M +V+S  R +
Sbjct: 485 LGDMDFKVAGTEEGITAIQMDIKISGIDEEILTKALEQARQGRLFILNKMREVISSPRPE 544

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ P V  M I P++IR VIG GGKVI  I+++TGAK++I+ DG + I +    + + 
Sbjct: 545 ISQYAPMVLQMKIDPEKIREVIGTGGKVINKIIDETGAKIDIEQDGNIFILAVERDKGKL 604

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A++MI  I + PEV KIY+ +V ++MDFGAF  F   ++GL+HISQ   +R    S +  
Sbjct: 605 AKQMIEEIVEEPEVGKIYRAKVTRLMDFGAFAEFMPGKEGLIHISQADIQRTDDISSLWS 664

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ-NTGKPI 698
            GD V V L++ DD+G++ LS + V Q + G+PI
Sbjct: 665 VGDEVEVMLMEIDDQGRMNLSRRAVMQRDVGEPI 698


>gi|300854507|ref|YP_003779491.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
           DSM 13528]
 gi|300434622|gb|ADK14389.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
           DSM 13528]
          Length = 717

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/695 (41%), Positives = 447/695 (64%), Gaps = 11/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            F    ++   AGR LK++ G+I + S+ A   +YG+TVVL         ++G DFFPL+
Sbjct: 2   FFMSEIIQTTVAGRTLKVDYGKIGKLSNCAFFISYGDTVVLINANASDKPREGVDFFPLS 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           + Y+ER Y+VGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  
Sbjct: 62  IEYEERLYSVGKIPGGFIKREGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D +++P ++++  AS AL +S +PF  PV    V  ++G++V+NP L+E  + SL+L V 
Sbjct: 122 DQDNAPDILAINGASLALCMSSIPFTTPVGAVSVGLVDGKFVINPGLEERSKSSLNLTVC 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSK 235
            T + V+MVE   +++ ED + DAI+FG  ECK ++    E ++K  K   +EP +   +
Sbjct: 182 ATDERVMMVEAGGDEIPEDTMYDAIMFGFEECKKIVAFQKETMNKYGKQ-KEEPELYKVE 240

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +   +EEE+ +   + ++ + +I ++  R   ++D+ K++   FS ++   N  +I  V 
Sbjct: 241 E--SIEEEVRKFAFQKIKDAMYIMDRDERNAALEDVDKELNEQFSEKYPD-NGPDIAEVV 297

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+ ++VR +ML++  R+DGR  + +R IS +VG+L RTHG+ LF RG TQ + V TLG
Sbjct: 298 YKIKKEIVRNMMLNEHRRVDGRAFDEIRPISCEVGILPRTHGTGLFTRGLTQVMTVATLG 357

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  D Q +D +   +   ++ HYNF   +TGE   +  P RREIGHG LA +A+ P++P 
Sbjct: 358 SLGDVQILDGVGSEESKRYIHHYNFPSYSTGETRPLRGPGRREIGHGALAEKALEPLIPS 417

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DF 473
             QFPYT+R+VSE+  S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGL+   D    
Sbjct: 418 EDQFPYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLITSEDLSKE 477

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            I++DI G ED  G MDFKV GT+ GITA+Q D KI G+SEN +   L +A+  RL IL+
Sbjct: 478 EIVTDIQGIEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSENCIRETLNRARTARLFILD 537

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           ++ K + E+R +L E+ P+   M+IPPD+IR+VIG GGKVI  I+ +TG K++I +DG +
Sbjct: 538 KIHKCIPEAREELSEYAPKTYTMSIPPDKIRDVIGAGGKVINKIIAETGVKIDIKEDGKI 597

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            + S   +  + A ++I  +T   +  +IY G+V K  +FGAFV     ++GLVHIS+L 
Sbjct: 598 FVMSEDSSSAKKALKIIEDLTREVKAGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLD 657

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             RV K  D+V  GD + VK+ D D++G+I LS K
Sbjct: 658 FTRVNKVEDIVSVGDKILVKVTDIDNQGRINLSRK 692


>gi|168180709|ref|ZP_02615373.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           NCTC 2916]
 gi|226949765|ref|YP_002804856.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           A2 str. Kyoto]
 gi|254782713|sp|C1FS53|PNP_CLOBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182668424|gb|EDT80403.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           NCTC 2916]
 gi|226842894|gb|ACO85560.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A2
           str. Kyoto]
          Length = 702

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/695 (42%), Positives = 446/695 (64%), Gaps = 16/695 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      ++ ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKAPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVI--DSKD 236
           + V+MVE    ++ E+ +  AI+FG  ECK ++    EA++K  K    EPI+   D + 
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFQECKNIVAFQEEAVAKFGK-TKNEPILYKADEEV 240

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
             +++E    MIKE +    +I +K  R  Q+D +K+K+   FS ++    + +I  V  
Sbjct: 241 EKEVKEFAFDMIKEVM----YIMDKDERNAQLDKVKEKISEEFSEKYED-KKADIAEVIY 295

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
             Q +VVR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG 
Sbjct: 296 KTQKEVVRNMLLNENRRPDGRSFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGA 355

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D ++      +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  
Sbjct: 356 LGDVQILDGIAEEASKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSE 415

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFI 474
            +FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     
Sbjct: 416 EEFPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLEKEK 475

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +++DI G ED  G MDFKVAGT+ GIT++Q D KI G+S+N +  AL+ AK+ RLHIL +
Sbjct: 476 VITDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSDNCVRDALEGAKKARLHILGK 535

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           + + + E R +L ++ PR EI+ I P++IR+VIG GGK+I  I+  T  K+ I +DG + 
Sbjct: 536 IKECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKIINKIIADTNVKIEIKEDGKIF 595

Query: 595 IASSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           + S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L 
Sbjct: 596 VTSNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLD 655

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 656 FARVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|147669503|ref|YP_001214321.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
           BAV1]
 gi|187610294|sp|A5FQT2|PNP_DEHSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146270451|gb|ABQ17443.1| Polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
           BAV1]
          Length = 720

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/701 (40%), Positives = 453/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G++AR +D A+   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++N+ Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  +++ YING++VLNP   + + S LDL V 
Sbjct: 121 DKENDADIWGVVGASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQLDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T+ AV+M+E  + ++ ED++++AI F H   + +I+   ++     KE + +   +   
Sbjct: 181 STRKAVVMIEAGSKEIPEDIMINAIEFAHKANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  ++  +K  +  +    +K  R   ++ L+ ++V+  S    ++ EG+I++ ++  
Sbjct: 241 EVKTAVAAFVKGRVNEALSHQDKTARENAVEGLQAELVAALSE---TFAEGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ GLL R HGS+LF RGDTQ + + TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ P+LP   +
Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPILPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  +   +  ++
Sbjct: 418 FPYTIRLVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENGTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +I+  A+ QAK  R +IL+ M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  + I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKINIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              A  + A ++I  +T   E   IY G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 IDEASAKKAIKIIEDLTKDIEAGSIYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  D+VK GD + VK+++ D++G++ LS +V+      PI
Sbjct: 658 EKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPI 698


>gi|170759417|ref|YP_001787723.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226702640|sp|B1KWK1|PNP_CLOBM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169406406|gb|ACA54817.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 702

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
           + V+MVE    ++ E+ +  AI+FG  ECK ++    EA++K  K    EP++  + +  
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    
Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KVADIAEVIYKT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++
Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  +D +   ++
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG + + 
Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597

Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   
Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|332522644|ref|ZP_08398896.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313908|gb|EGJ26893.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 742

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/687 (41%), Positives = 435/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 21  FAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 80  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMAA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV YI+GQ+++NP   + + SL +L V+G+++A+ MVE
Sbjct: 140 MFGSSLALSISDIPFNGPIAGVQVGYIDGQFIINPDKAQMEASLLELTVAGSKEAINMVE 199

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   + +I    ++     KE   ++     + L+ E+    
Sbjct: 200 SGAKELSEDIMLEALLKGHQAIQELITFQEEIVAAVGKEKTEVELLQVDTDLQAEIVTKY 259

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKK-----MVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
              L+ +  + EK  R    +++K+      M  +   E+ +    ++V + E ++   V
Sbjct: 260 NAQLQTAVQVEEKKAREAATEEVKETVKAEYMERFAEDENLATIMRDVVEILEQMEHAEV 319

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + K+R DGR  + +R + AQ+  L + HGS LF RG TQA+ V+TL    + Q +
Sbjct: 320 RRLITEDKIRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQII 379

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP   +FPY +
Sbjct: 380 DGLDEEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLEEFPYAI 439

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 440 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLE 499

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++  R
Sbjct: 500 DHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEATIATPR 559

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V+I SS  A I
Sbjct: 560 LELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGMVQIFSSDQAAI 619

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R A  SDV
Sbjct: 620 NRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANVSDV 679

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++ G+ V VK++  D++G++  SMK +
Sbjct: 680 LEIGEEVDVKVIKVDEKGRVDASMKAL 706


>gi|148380367|ref|YP_001254908.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933900|ref|YP_001384587.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934955|ref|YP_001388103.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
           str. Hall]
 gi|187610255|sp|A7FVY7|PNP_CLOB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610257|sp|A5I4I7|PNP_CLOBH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148289851|emb|CAL83959.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929944|gb|ABS35444.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930869|gb|ABS36368.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. Hall]
          Length = 702

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
           + V+MVE    ++ E+ +  AI+FG  ECK ++    EA++K  K    EP++  + +  
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    
Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KVADIAEVIYKT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++
Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQSE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  +D +   ++
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG + + 
Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597

Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   
Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|219854675|ref|YP_002471797.1| hypothetical protein CKR_1332 [Clostridium kluyveri NBRC 12016]
 gi|219568399|dbj|BAH06383.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 715

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/691 (42%), Positives = 443/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++   AGR LK++  ++   S+  +L +YG+TVVL         ++G DFFPL++ Y+
Sbjct: 10  EVIQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLSIEYE 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 70  ERLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDN 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
            P++V+M  AS AL +S +PF  PV    V  ++G +++NP L D ++ +L+L V  T++
Sbjct: 130 LPNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE 189

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239
            V+MVE  A ++ ED++ DAIIFG  ECK +     ++ K   K+    D  D  K    
Sbjct: 190 RVMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKK---DEPDLYKVNED 246

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEEE+     + ++ + +I ++  R K + D+ +K+   FS +++  N+ +I  V   ++
Sbjct: 247 LEEEVRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQFSEDYAD-NKSDIADVVYRVK 305

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++L +  R+DGR+ + VR IS +VG L R HG+ LF RG TQ + VVTLG+  D
Sbjct: 306 KEIVRGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGD 365

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +       +M HYNF   +TGEV  +  P RREIGHG LA +A+ P++P   QF
Sbjct: 366 VQILDGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQF 425

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGLV  +D     IL+
Sbjct: 426 PYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEILT 485

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKV GT+ GITA+Q D KI G+S   +   L++A+  RL+IL +M +
Sbjct: 486 DIQGLEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQ 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + E R ++ ++ P+  IM+IPPD+IR+VIG GGKVI  I+ +TG K++I +DG + + S
Sbjct: 546 CIPEHRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVMS 605

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 + A ++I  +T    V +IY G+V K+ +FGAFV     ++GLVHIS+L   RV
Sbjct: 606 EDSEGAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTRV 665

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  D+V  GD + VK+++ D++G+I LS K
Sbjct: 666 NKVEDIVSVGDEILVKVIEIDNQGRINLSRK 696


>gi|168184618|ref|ZP_02619282.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Bf]
 gi|237795848|ref|YP_002863400.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           Ba4 str. 657]
 gi|259534115|sp|C3L0B0|PNP_CLOB6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182672277|gb|EDT84238.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Bf]
 gi|229263835|gb|ACQ54868.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Ba4 str. 657]
          Length = 702

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 445/693 (64%), Gaps = 12/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
           + V+MVE    ++ E+ +  AI+FG  ECK ++    EA++K  K    EP++  + +  
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGK-TKNEPVLYKADE-- 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    
Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYEDKG-ADISEVIYKT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR ++L++  R DGR    VR IS +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFNEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  +D +   ++
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG + + 
Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597

Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   
Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|254416087|ref|ZP_05029842.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
           7420]
 gi|196177020|gb|EDX72029.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
           7420]
          Length = 715

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 302/691 (43%), Positives = 437/691 (63%), Gaps = 14/691 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L  G +A Q+ G+VL   G+T VL T       ++G DF PL V+Y+ER Y
Sbjct: 8   ISFDGRDIRLRAGLLAPQAGGSVLIESGDTAVLVTATRSAG-REGIDFLPLLVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E   L SR+IDR +RPLF    +++ Q++   +  D +  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++ + +PF GP+   +V  +   +++NP   E D G LDL V+G+   V+M
Sbjct: 127 LAVTGASVAVLQAQIPFYGPMAAVRVGLVGDDFIINPTYREIDNGDLDLVVAGSPQGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQ 246
           VE  ANQL E  +++AI FG+   + +I A   L K    E I  +  + S +LEE +  
Sbjct: 187 VEAGANQLPERDIIEAIEFGYEAVQDLIAAQENLLKELGIEIIQAEPPETSSELEEFIRD 246

Query: 247 MIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVSVFE 296
              + ++  +S F  +K+ R + +D++K+  +    +E         ++ N+  + SVF+
Sbjct: 247 RATKPIKKVLSQFDFDKHDRDEALDEIKENEILAPIAERPEDDPLRVAAANDQLLSSVFK 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355
            +  K++R+ +++  VR+DGR  + VR +S QVGLL  R HGS LF RG TQ +  VTLG
Sbjct: 307 SLTKKLMRSQIVEDGVRVDGRKLDEVRPVSCQVGLLPSRVHGSGLFNRGLTQVLSTVTLG 366

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L+  +   ++ HYNF P + GE   M +P RREIGHG LA RAI P+LP 
Sbjct: 367 TPGDAQMLDDLNPEEEKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERAIIPILPP 426

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+GD+  I
Sbjct: 427 QNEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGDEVRI 486

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+    +  A++QAK  RLHIL +M
Sbjct: 487 LTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPMETVAKAIEQAKPARLHILEKM 546

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              + + R  L  F PR+  M I PD I  VIG GGK I+GI EQTGAKV+IDDDGT+ +
Sbjct: 547 LAAIDKPRPDLSAFAPRLLTMKIDPDLIGLVIGPGGKTIKGITEQTGAKVDIDDDGTITV 606

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ++    + + A  +I+ +T   E   +Y G+V +++  GAFV     ++G++HISQL+  
Sbjct: 607 SAVEGEKAKKAITLIQGMTRRLEEGDVYAGRVTRIIPIGAFVEVLPGKEGMIHISQLADY 666

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           RV K  D V  GD V VK+ + D++G+I L+
Sbjct: 667 RVGKVEDEVAVGDEVIVKVREIDNKGRINLT 697



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 16/201 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGT-REDEQYV 363
           V LDK +  DGRD      I  + GLL    G S+ I  GDT  +V  T    RE   ++
Sbjct: 2   VELDKSISFDGRD------IRLRAGLLAPQAGGSVLIESGDTAVLVTATRSAGREGIDFL 55

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             L      + +     +P   G + R G P  +     RL  R + P+ P   +    +
Sbjct: 56  PLL--VDYEERLYAAGRIPG--GFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQI 111

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
              +   +      +  V G+S+A++ A +P   P+A + +GLV  GDDFII  + +  E
Sbjct: 112 VATTLSMDEQVPPDVLAVTGASVAVLQAQIPFYGPMAAVRVGLV--GDDFII--NPTYRE 167

Query: 484 DHLGHMDFKVAGTDSGITAMQ 504
              G +D  VAG+  G+  ++
Sbjct: 168 IDNGDLDLVVAGSPQGVIMVE 188


>gi|108804255|ref|YP_644192.1| polynucleotide phosphorylase/polyadenylase [Rubrobacter
           xylanophilus DSM 9941]
 gi|123069114|sp|Q1AW48|PNP_RUBXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108765498|gb|ABG04380.1| Polyribonucleotide nucleotidyltransferase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 686

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 296/685 (43%), Positives = 431/685 (62%), Gaps = 8/685 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           +EI    R + LETG++ARQ+ GAV A +G+T VL+T       + G  F PL+V+ +ER
Sbjct: 3   LEIPVGERAIVLETGKLARQAGGAVTARFGDTTVLSTATRSEEPRPGATFLPLSVDIEER 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             + GKIPGG+L+RE +P+E  IL +R+ DR IRPLF K Y  E QVI  V+  D E+  
Sbjct: 63  MSSAGKIPGGFLKREGKPSEKAILTARLTDRPIRPLFPKDYYYEVQVIGTVLVADQENPY 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
            VVSMV ASAAL LS +PF GP+   +V  + +G ++LNP   + ++  LD+ V+GT++A
Sbjct: 123 DVVSMVGASAALALSDIPFGGPIGAVRVGRHPDGGFILNPTYQQLEESDLDIVVAGTKEA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           + MVE  A +++EDVV++A+       +   EAI + A    +E    +    +   EE+
Sbjct: 183 ITMVEAGAREVTEDVVVEALEVAQGVIREQAEAIERWAAEHGEEKQPFEEPGENPFVEEL 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                E ++      ++  R + ID LK+++V   S E        ++     +Q +  R
Sbjct: 243 RGAYLERIKEGLISTDRRARHEAIDLLKEELVEGRSEEEVPL----VLDALAQLQKEAFR 298

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + L+ + R D R  + +R  +A+  +L R HG+ LF RG+TQ +  + L      Q +D
Sbjct: 299 KLYLEDRKRTDLRAFDEIRPTTAEAHVLPRVHGTGLFTRGETQVLSSLALADLGLVQRLD 358

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L       +M HY F P +TGE  R+G P RREIGHG LA RA+ PV+P   +FPY +R
Sbjct: 359 TLEPQTTKRYMHHYYFPPYSTGETGRLGPPRRREIGHGALAERALLPVIPSEEEFPYAIR 418

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I+SE+ ES+GSSSMA+VCGS+LALMD GVPI  PVAG+AMGLVK+GDD++IL+DI G ED
Sbjct: 419 IISEVLESNGSSSMASVCGSTLALMDGGVPIKAPVAGVAMGLVKEGDDYVILTDIQGLED 478

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           H+G MDFKVAGT  GITA+QMDMKI G+S  ++  AL+QA+RGRL IL+ M + ++E R 
Sbjct: 479 HMGDMDFKVAGTRDGITALQMDMKITGVSAELLKEALEQARRGRLQILDIMREEIAEPRP 538

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ +  PRVE++ IP D+I  +IG GGK I  + ++ G  +++++DGTV +A      ++
Sbjct: 539 EISDHAPRVEVIQIPTDKIGLLIGPGGKTINALQDEYGVNISVENDGTVYVAGVEGMSVK 598

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSD 662
           AA   I+ +T   E   IY G+VVK  +FGAFV     RDGL+HIS+L+   +RV +  D
Sbjct: 599 AAVSAIKGMTKEVEAGDIYVGKVVKTTNFGAFVELTPGRDGLLHISRLAPGKQRVRRVED 658

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
           V+ EGD V V++L+ D + +I L M
Sbjct: 659 VLNEGDVVKVRVLEIDKQNRISLEM 683


>gi|304440007|ref|ZP_07399900.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371499|gb|EFM25112.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 697

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/686 (43%), Positives = 446/686 (65%), Gaps = 9/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E AGR +++  G++A Q++GA L  YG+TVVL T    +  ++G DFFPL+V+Y+E+ YA
Sbjct: 8   EIAGREMRVTIGKVAEQANGAALVEYGDTVVLVTATASKKPREGIDFFPLSVDYEEKMYA 67

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE RP+E  IL +R+IDR +RPLF + Y+N+ QV+   +  D ++ P +V
Sbjct: 68  VGKIPGGFIKREGRPSEKAILTARLIDRPLRPLFPEGYRNDVQVVATALAVDQDNQPDIV 127

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +MV +S AL +S +PF+GP     V  ++G+YV+NP  ++   S ++L ++GT+ A++MV
Sbjct: 128 AMVGSSIALTISDIPFDGPTGSVFVGMVDGEYVINPTEEQRAKSKIELNLAGTKSAIMMV 187

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           E  A  +SE+ +L AI+ GH E K + E I ++ +   KE       +  K +EE+ + +
Sbjct: 188 EAGAKIVSEEEMLGAILKGHEEIKKICEFIEEIQREVGKEKA---QYEVFKPDEEIKEKV 244

Query: 249 ----KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
               KE L  +    +K +R ++ ++ K K+  +F+ E   + + +I +  E I+ + VR
Sbjct: 245 IAFGKELLVEAINQDDKIIREEKTEEAKDKIYEHFNEELEEFGK-DIDAAIESIEVEEVR 303

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             ++++  R DGR  + +R +S++VGL +RTHGS LF RG TQ + + TL    + Q +D
Sbjct: 304 RGIIEEDRRPDGRALDEIRPLSSEVGLFRRTHGSGLFKRGQTQVLSITTLAGLSEVQVID 363

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L       ++ HYNF P + G+   M  P RREIGHG LA RA+ PVLP   +FPY +R
Sbjct: 364 GLGDDTPKRYIHHYNFPPYSVGDTKPMRGPGRREIGHGALAERALIPVLPTEEEFPYAIR 423

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+  S+GSSS A+VCGS+L+LMDAGVPI +PVAGIAMGL+++     IL+DI G ED
Sbjct: 424 VVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKQPVAGIAMGLIEEHGVIKILTDIQGLED 483

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           H G MDFKVAGT  GITA+QMD+K+ GI + I+  AL++A+  RL IL+ +   + E R 
Sbjct: 484 HFGDMDFKVAGTREGITAIQMDIKVEGIKKEILEEALEKARIARLQILDNIEATIDEPRE 543

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  F P + I+ I P++I  VIG GGKVI  I+EQTG K++IDDDG V + S+   + +
Sbjct: 544 KLSPFAPIIYIILIDPEKIGEVIGSGGKVINKIIEQTGVKIDIDDDGKVSVISNDHEKAQ 603

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A ++I  I    E+  IY G+V K+M FGAFV      +GL+HIS++  +R  K  D +
Sbjct: 604 EAIDIIEGIVKEVEIGDIYNGKVKKLMKFGAFVEIKKGTEGLLHISEIDHKRTEKVEDEL 663

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD+V VK++D D++GKI LS K +
Sbjct: 664 KVGDSVVVKVIDVDEQGKISLSRKAL 689


>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
 gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
          Length = 693

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/701 (42%), Positives = 452/701 (64%), Gaps = 23/701 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M  V + + E+AG+ LK++ G++A Q+ GA L  YGET VL TVV     K+  DFFPLT
Sbjct: 1   MRQVCSFKREFAGKELKIDIGKVAWQATGAALVQYGETTVLVTVVASEDKKEDVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y ER YA GKIPGG+ +RE +PTE EIL +R+IDR +RPLF+K ++NE QVI+ V+ +
Sbjct: 61  VEYVERLYAAGKIPGGFFKREGKPTEPEILFARLIDRPLRPLFAKDFRNEVQVIVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179
           D E+S  + S++ AS A++L+GLPF+GP+   ++ +   ++ +NP +   +   LDL V+
Sbjct: 121 DHENSTDIPSIIGASCAIILAGLPFKGPIGAVRIGWDGNEWYINPPVTLSNSLLLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDS 234
           GT+DAVLM+E +  ++ ED+ L+ II  H+    VI    E +S++       +P V+D 
Sbjct: 181 GTKDAVLMIEGDGKEVPEDIFLEGIIKAHSAMLDVINFQEEILSQINPAPFNYDPFVVDE 240

Query: 235 KDFSKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           +    L+  +   +  D +R + F P K  R K ++DLKKK++ +F   +     GEI +
Sbjct: 241 R----LKRAVLDYVTVDQIRDAIFTPSKSERQKALEDLKKKVIEHFKPIY-----GEITA 291

Query: 294 VFEDI----QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
             ++I      K++  V+L++K R+DGR    +R +S +VG+L+R HGS+LF RG+TQ +
Sbjct: 292 QVDEIINQEAKKILSQVVLEEKRRVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVL 351

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            VVTLG  E EQ ++S+  ++   ++ HYNF P + GE   +  P RREIGHG LA RA+
Sbjct: 352 SVVTLGAGE-EQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIGHGALAERAL 410

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            P++P+  +FPYT+R+VSE+  S+GS+SMA+VCGSSL+LMDAGVPI   VAG+AMGL+K+
Sbjct: 411 LPLIPKEEEFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKE 470

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD F +L+DI G ED LG MDFK+AGT +GITA+Q+D+K+ G+S  I+   L+QAK  R 
Sbjct: 471 GDRFEVLTDIQGLEDALGGMDFKIAGTRNGITAVQLDIKVDGLSYEIIERTLKQAKEARY 530

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL+ M K + + R ++  + PR+ ++ I P +I ++IG  GK I+ I+E+T   +NI  
Sbjct: 531 QILDIMEKTIPQPRPEISPYAPRIMVLEINPSKIGDLIGPSGKNIKKIIEETHTTINIKP 590

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V I++      E A +M++  T   +   I+ G+V++V D+GAFV     + GL+HI
Sbjct: 591 EGLVYISAPDQESAEKAAQMVQDYTRDIKEGDIFLGKVIRVTDYGAFVEILPGKIGLLHI 650

Query: 650 SQLSTERVAK--TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           S+  T    K  T + +  GD + +K+   D  G+I L+ K
Sbjct: 651 SKYKTTGTGKNQTREEINLGDEILIKVDSIDSSGRISLTRK 691


>gi|299144054|ref|ZP_07037134.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518539|gb|EFI42278.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 714

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/688 (42%), Positives = 449/688 (65%), Gaps = 11/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++ AGR LK+  G++A Q++GA L  YG+TVVL TV   ++ +DG DFFPL+V+++E+ Y
Sbjct: 7   LDLAGRTLKVTVGKVAEQANGACLVEYGDTVVLVTVTASKTPRDGIDFFPLSVDFEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGK+PGG+++RE +P+E  IL SR+IDR IRPLF + Y+N+ QV+  V+  D +  P +
Sbjct: 67  AVGKMPGGFIKREGKPSEKSILSSRLIDRPIRPLFPEGYRNDVQVVATVLSVDQDCQPDI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           V M+ +S AL +S +PF+GP     V Y++G+Y++NP   E + S + L VSGT+ A++M
Sbjct: 127 VGMIGSSIALSISDIPFDGPTGSVLVGYVDGKYIVNPTETEREKSDIYLVVSGTKTAIMM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE  AN +SE+ +L+AI+  H E K + + + ++     K+     S +  K  EE+   
Sbjct: 187 VEAGANIVSEETMLNAILTAHEEIKKICDFVDQIKAEVGKDKT---SYEVFKPNEEIKTK 243

Query: 248 IKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           +KE    S  +     P+K +R +++++ K+ +  +F      +++   + + E    +V
Sbjct: 244 VKE-YGTSMIVDAINEPDKIIRIEKVEEAKENIRKHFEELMEEFSKDIEIIMEEIEVTEV 302

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R ++ D+ +R DGR  + +R +S++ G+L RTHGS LF RG TQ + + TL    D Q 
Sbjct: 303 RRGIIEDE-IRPDGRKLDEIRHLSSETGILPRTHGSGLFTRGQTQVLSIATLAGLSDVQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   ++ HYNF P + G+   M  P RREIGHG LA +A+ PV+P   +FPY 
Sbjct: 362 IDGLGDDKPKRYIHHYNFPPFSVGDTKPMRGPGRREIGHGALAEKALLPVIPTEEEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GSSS A+VCGS+LALMDAGVPI  PVAGIAMGL+++     IL+DI G 
Sbjct: 422 IRVVSEVLSSNGSSSQASVCGSTLALMDAGVPIKAPVAGIAMGLIEENGITKILTDIQGL 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA+QMD+K+ GIS+ ++ +AL++AK+ RL IL  ++  +SE 
Sbjct: 482 EDHFGDMDFKVAGTKEGITAIQMDIKVEGISKEVLAVALERAKKARLEILEHLNTTISEP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P + I+ I P++I  VIG GGK+I  I+E+TG K++ID+DG V + S +  +
Sbjct: 542 RKELSPYAPIIHIIIIDPEKIGEVIGTGGKMINKIIEKTGVKIDIDEDGKVSVLSENSEK 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I SI    EV  I++G+V K+M FGAFV      + L+HIS++  ER  K  D
Sbjct: 602 AKEAISIIESIVKEVEVGDIFEGKVKKIMKFGAFVELKKGVEALLHISEIQHERTNKVED 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++K GD V VK+++ D+ GK+ LS KV+
Sbjct: 662 ILKIGDIVKVKVIEIDEDGKMSLSRKVL 689


>gi|216263697|ref|ZP_03435692.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
 gi|215980541|gb|EEC21362.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
          Length = 722

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/705 (41%), Positives = 439/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251
           +SED++L AI   H   K +  A  +   +     K P+  + K F + ++E+   I  D
Sbjct: 194 VSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIF-EFKKELRDFIYAD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   +FSS  +    NE      F+D + ++VR  +L+
Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFEKEIVRNSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R DGR    +RDI A+V +L RTHGSSLF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMIPGKNDFPYTIRVVSEI 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT++GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 492 DFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVISNSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEK 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------------- 655
           I SI   P+V +IY+G V K+  FGAF+     ++G +     S +              
Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGHGNRY 671

Query: 656 -RVAKTSDVVK------------EGDTVWVKLLDFDDRGKIKLSM 687
            R     D ++            EG  + V+++D D  GKI L +
Sbjct: 672 SRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716


>gi|322806678|emb|CBZ04247.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           H04402 065]
          Length = 702

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 446/693 (64%), Gaps = 12/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
           + V+MVE    ++ E+ +  AI+FG  ECK +     EA++K  K    EP++  + +  
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIAAFQEEAVAKFGK-TKNEPVLYKADE-- 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    
Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYEDKG-ADIAEVIYKT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++
Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  +D +   ++
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG + + 
Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597

Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   
Sbjct: 598 SNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|329116899|ref|ZP_08245616.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
           NCFD 2020]
 gi|326907304|gb|EGE54218.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
           NCFD 2020]
          Length = 748

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/703 (40%), Positives = 438/703 (62%), Gaps = 14/703 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F+  ++NE QVI  V+  D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFADGFRNEIQVINTVLSFDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G+Y++NP   + + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEYIINPNKAQLEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSK 239
           A+ MVE  A +LSED++L+A++ GH   + +I    E ++ + K  AK  ++  + D   
Sbjct: 183 AINMVESGAKELSEDIMLEALLRGHKAIQELIAFQEEIVAAVGKEKAKVELLQVNAD--- 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-----VSYFSSEHSSWNEGEIVSV 294
           L+ E+ +    DL+ +  + EK  R    + +K+ +       +   E  S    ++  +
Sbjct: 240 LQAEIVEKYNADLQKAVQVEEKKAREAATEAVKETVKADYEAKFAEDESLSTIMRDVAEI 299

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E ++   VR ++ + KVR DGR  + +R + AQ+  L + HGS LF RG TQA+ V+TL
Sbjct: 300 LEQMEHAEVRRLITEDKVRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTL 359

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP
Sbjct: 360 APMGETQIIDGLDDEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLP 419

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ 
Sbjct: 420 SLEDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDL 539

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           +   ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+GTV+
Sbjct: 540 IQATIAEPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDDEGTVQ 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS    I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++ 
Sbjct: 600 IFSSDQVAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAW 659

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            R A  SDV++ G+ V VK++  D++G++  SMK +     KP
Sbjct: 660 TRTANVSDVLELGEEVDVKVIKVDEKGRVDASMKALLPRPPKP 702


>gi|153954062|ref|YP_001394827.1| polynucleotide phosphorylase/polyadenylase [Clostridium kluyveri
           DSM 555]
 gi|189037304|sp|A5N848|PNP_CLOK5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096734|sp|B9E1K8|PNP_CLOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146346943|gb|EDK33479.1| Pnp [Clostridium kluyveri DSM 555]
          Length = 708

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/691 (41%), Positives = 445/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++   AGR LK++  ++   S+  +L +YG+TVVL         ++G DFFPL++ Y+
Sbjct: 3   EVIQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLSIEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
            P++V+M  AS AL +S +PF  PV    V  ++G +++NP L D ++ +L+L V  T++
Sbjct: 123 LPNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+MVE  A ++ ED++ DAIIFG  ECK +     ++ K   K+    D  D  K+ E+
Sbjct: 183 RVMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKK---DEPDLYKVNED 239

Query: 244 MSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + + ++    + ++ + +I ++  R K + D+ +K+   FS +++  N+ +I  V   ++
Sbjct: 240 LEEEVRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQFSEDYAD-NKSDIADVVYRVK 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++L +  R+DGR+ + VR IS +VG L R HG+ LF RG TQ + VVTLG+  D
Sbjct: 299 KEIVRGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +       +M HYNF   +TGEV  +  P RREIGHG LA +A+ P++P   QF
Sbjct: 359 VQILDGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGLV  +D     IL+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEILT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKV GT+ GITA+Q D KI G+S   +   L++A+  RL+IL +M +
Sbjct: 479 DIQGLEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQ 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + E R ++ ++ P+  IM+IPPD+IR+VIG GGKVI  I+ +TG K++I +DG + + S
Sbjct: 539 CIPEHRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVMS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 + A ++I  +T    V +IY G+V K+ +FGAFV     ++GLVHIS+L   RV
Sbjct: 599 EDSEGAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  D+V  GD + VK+++ D++G+I LS K
Sbjct: 659 NKVEDIVSVGDEILVKVIEIDNQGRINLSRK 689


>gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
           8797]
 gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
           8797]
          Length = 711

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/690 (42%), Positives = 431/690 (62%), Gaps = 8/690 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE E  G+ L L TG++A+Q+ GAVL  YGETVV          + G DFFPLTV+Y+ER
Sbjct: 5   VECEVGGQKLSLTTGQLAKQAAGAVLVQYGETVVFVAAATGPG-RPGIDFFPLTVDYRER 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A GK PGG+L+RE RPT  EIL +R+ DR IRPLF K + +E Q+  NVM  D  + P
Sbjct: 64  AAASGKFPGGFLKREGRPTTKEILTARLTDRPIRPLFPKGFHDELQIQSNVMSCDGINEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+S+  ASAAL LS +PF+GP+   ++  I+G+ ++ P  ++  +G LDL V+GT ++V
Sbjct: 124 DVLSINGASAALCLSPVPFQGPIGAVRIGRIDGELIVFPNHEQIAEGDLDLIVAGTIESV 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           LM+E   NQ+ ED +L+AI+  H E   + +   +L +    EP   ++   +    ++ 
Sbjct: 184 LMIEGFGNQIPEDEMLEAIMLAHTELAKICKLQLELREKAGIEPFEYEAPPENPFVAKLD 243

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300
             I + L  +     K  R      +++++++ F  E +   E     G+    F D++A
Sbjct: 244 DAIFQKLSSAMQSTVKAERRDGAKAIQEELINKFFPEGADTTEDGATIGDFKEAFHDLEA 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR + +  + R+DGR  + +RD++ + G L R HGS++F RG+TQ++  VTLGT  D+
Sbjct: 304 KAVREMAITGR-RLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLATVTLGTSRDK 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VD L   +   FM+HY F   + GE   +  P RREIGHG LA R++ PVLP    FP
Sbjct: 363 QRVDGLFEEELQQFMLHYYFPSFSVGECRPIRGPGRREIGHGCLAERSVLPVLPNEEDFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R++S+I ES+GSSSMA+VC ++LALMDAGVP+ +PVAGI++GLV  G ++ IL+DI 
Sbjct: 423 YTIRVISDILESNGSSSMASVCSATLALMDAGVPLRQPVAGISIGLVTKGKEYKILTDII 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDH   MDFKVAGT  GIT +Q+D+K  GI+E I+   L+QAK+ RL +L  M   + 
Sbjct: 483 GDEDHFCDMDFKVAGTQKGITGIQLDLKNDGINEEIIKATLEQAKKARLELLRTMLTAIR 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++  + PR+    I P++I  +IG GGK IR I E+TGA ++I DDGTV ++  ++
Sbjct: 543 RPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEETGATIDIQDDGTVTVSGGNV 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           + +E A   I ++T+   V +IY G V  + +FGAF+     +DGL HIS+LS   V   
Sbjct: 603 SVVEKAMAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SD+ K GD + VK++  DD+ ++KLS K V
Sbjct: 663 SDICKMGDRLQVKVIAVDDQNRVKLSRKAV 692


>gi|15639871|ref|NP_219321.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026109|ref|YP_001933881.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
           subsp. pallidum SS14]
 gi|81344924|sp|O83856|PNP_TREPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704828|sp|B2S4C3|PNP_TREPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3323203|gb|AAC26576.1| polyribonucleotide nucleotidyltransferase (pnp) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018684|gb|ACD71302.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060245|gb|ADD72980.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 702

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/695 (41%), Positives = 444/695 (63%), Gaps = 6/695 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H++       PL LE+G +ARQ++G+V      T +LATV      ++G D+ PLTV++ 
Sbjct: 3   HSITGTIGDHPLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDFN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGK+PGG+++RE RP + EILISR+IDR +RPLF K +  +  V+   +  D+  
Sbjct: 63  EKYYAVGKMPGGFIKREGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSDMVH 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++VA+SAA+ LS +PF GPV   +V Y+NG YV+NP   + D  S+++ V+GT+ 
Sbjct: 123 PHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVAGTRQ 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEE 242
            + MVE  A ++SED++L A+       K + +   +L  +C KE   VI S       +
Sbjct: 183 GITMVEGGAREVSEDLMLGALEQAQEHIKALCDMQERLRGLCGKEKQTVIPSSAQLVGRD 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAK 301
            + ++    L  + +   K  R    D +K+ +   ++++  +  +  +  ++F +++ +
Sbjct: 243 RIYELAYPRLAQALYAQGKGERRSACDAVKRDVAQQYAAQLENDVQRRLFDALFHEMEYE 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  +LD+ +R+DGR  + +R I+ +VG+L R HGS++F RG+TQ++ VVTLG   D Q
Sbjct: 303 ILRLNILDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             D + G +R +F++HYNF P + GE+ RMG   RREIGHG LA R++  V+P   QFPY
Sbjct: 363 VYDDIEGDRRENFILHYNFPPFSVGEIGRMGV-GRREIGHGCLAHRSLSAVIPDPEQFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSMATVC  +L+L+ AGVPI KPVAGIAMGL+ DG  + ILSDI G
Sbjct: 422 TVRVVSEILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDILG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +EDHLG MDFKVAGT  GIT  QMD+K+  +S ++M  ALQQA+ GRLHIL+ M++ +S 
Sbjct: 482 EEDHLGDMDFKVAGTCDGITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQTISA 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
             + +  + P +E   I  ++I  +IG GGK ++ + +Q    +N D DGTV ++     
Sbjct: 542 PSVHISRYAPHIESFKIAVEKIGALIGPGGKTVKSLSDQYRVTINTDSDGTVTVSGRDAQ 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +  A+  +  +T+ P V ++Y+G V ++++FGAFV     ++GL H+S+LS  RV+K S
Sbjct: 602 SVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEIFPGKEGLCHVSKLSRSRVSKVS 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV++EG  + VKL+D D  G++ LS   +D   GK
Sbjct: 662 DVLQEGQRICVKLIDIDRMGRLNLSY--IDALEGK 694


>gi|322374786|ref|ZP_08049300.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
 gi|321280286|gb|EFX57325.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
          Length = 737

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 284/694 (40%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 10  FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +
Sbjct: 69  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+ A+ MVE
Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTKHAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+ E+    
Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQTEIIAAY 248

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVV 303
             DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++   V
Sbjct: 249 NSDLQKAVQVEEKLAREVATQAVKDQVTAVYQEKYADHEEFDRIMRDVAEILEQMEHAEV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL    + Q +
Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FPY +
Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L+DI G E
Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + + + E R
Sbjct: 489 DHFGDMDFKVAGTREGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEETIPEVR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +T  K++ID++G V I SS    I
Sbjct: 549 PELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETAVKIDIDEEGNVSIYSSDQDAI 608

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R     D+
Sbjct: 609 NRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNNVEDL 668

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V  GD V VK++  D++G++  SMK +     KP
Sbjct: 669 VAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 702

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 296/680 (43%), Positives = 439/680 (64%), Gaps = 3/680 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G  L +  G++A Q++G  L   G+T++L T V     ++G DFFPL  +YQE+ YAVGK
Sbjct: 12  GSDLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE + ++  ILISR +DR +RPLF + + N+ QVI      D ++ P  ++ +
Sbjct: 72  IPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS AL +S +PF GPV    V Y++G++++NP  D+ ++ SLDL V+GT DA+ MVE  
Sbjct: 132 GASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDLTVAGTADAINMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           AN+LSED +L+A++  H E K +   I  +     KE + +  +  ++L+ ++     ED
Sbjct: 192 ANELSEDEMLEAMMVAHAEIKEICSFIQTIIDDIGKEKMEVAEEVETELQRKIKDKYTED 251

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           ++ S    +K  R   I+ +++K    F  E    +E EI    + I  K VR ++   K
Sbjct: 252 IKNSIRTTDKVQREDDINAIEEKCREDFLEEFPE-SEDEIHKTVDSIMKKEVRRMISIDK 310

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +SA+ GLL R HGS LF RG TQ + V+TLG+  +EQ +DS++  + 
Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370

Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
               +H YNF P   G++  +  P RRE+GHG LA RA+ PVLP T  FPYT+R+VSE+ 
Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTKDFPYTIRVVSEVL 430

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+DI G EDHLG MD
Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTDIQGLEDHLGDMD 490

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+QMDMKI GI++ ++  AL  A   RL IL+ ++  + + R  L ++ 
Sbjct: 491 FKVAGTKDGITALQMDMKISGINKEVLQEALADAHEARLKILDVITSAIDKPREDLSKYA 550

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + + P+++R+VIG GGK I  I+++TG K+  +DDG + +AS+     + A EMI
Sbjct: 551 PRIFSIDVDPEKVRDVIGAGGKTINKIIDETGVKIETEDDGHITVASNDGDSGKKAIEMI 610

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +SI   P+   IY+G+V ++M+FGAFV     ++GL+HISQ+ T+R  K  DV+K GD V
Sbjct: 611 KSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTEKVEDVLKIGDKV 670

Query: 671 WVKLLDFDDRGKIKLSMKVV 690
            VK+ + D +G+I LS K +
Sbjct: 671 RVKVTEIDRQGRINLSRKAL 690


>gi|307155205|ref|YP_003890589.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
 gi|306985433|gb|ADN17314.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
          Length = 718

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 307/698 (43%), Positives = 442/698 (63%), Gaps = 26/698 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKVPG-REGVDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILISR+IDR +RPLF    +++ QVI   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPHWLRDDLQVIATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF GP+   +V  +   +++NP   E + G LDL V+G+ + V+M
Sbjct: 127 LAVTGASLAVILAKIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVAGSPEGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I A    I  L  ++ + E   ++      + E
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIAAQLDVIQTLGIEIVSSEEPPVNQPVLEFITE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV-------- 294
             S  IK+ L  S +  +K  R   +D++K   V     E +S  E + V V        
Sbjct: 247 RTSDEIKKVL--SQYDLDKTARDLALDEIKAAKVQ---EEIASLPEEDPVKVAVTEDSKL 301

Query: 295 ----FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
               F+D+  K++R  ++++ VR+DGR  + VR IS +VGLL QR HGS LF RG TQ +
Sbjct: 302 VSNLFKDVTKKLMRAQIINEGVRVDGRKLDEVRPISCRVGLLPQRVHGSGLFCRGLTQVL 361

Query: 350 VVVTLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
            + TLGT  D Q   D L       ++ HYNF P + GE   M +P RREIGHG LA RA
Sbjct: 362 SLATLGTPGDAQELADDLHPEDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERA 421

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           I PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K
Sbjct: 422 ITPVLPTQQEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIK 481

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +GD+  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +I+  A++QA+  R
Sbjct: 482 EGDEVRILTDIQGIEDFLGDMDFKVAGTDNGITALQMDMKITGLSMDIVAKAIEQARPAR 541

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL++M  V+ + R +L  + PR+  M I PD I  VIG GGK ++ I EQT  K++ID
Sbjct: 542 LHILDKMLSVIEQPRPELSPYAPRLLTMRIDPDMIGLVIGPGGKTVKSITEQTKTKIDID 601

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDGTV I++S   + E A+++I ++T      ++Y G+V +++  GAFV     ++G++H
Sbjct: 602 DDGTVTISASEAEQAERAKQLIHNMTRKLNEGEVYVGRVTRIIQIGAFVEIMPGKEGMIH 661

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           ISQL+  RV K  D +  GD V VK+ + D++G++ L+
Sbjct: 662 ISQLAEGRVGKVEDELAVGDEVVVKVREIDNKGRLNLT 699


>gi|222152456|ref|YP_002561631.1| polynucleotide phosphorylase/polyadenylase [Streptococcus uberis
           0140J]
 gi|254782739|sp|B9DTE3|PNP_STRU0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222113267|emb|CAR40790.1| polyribonucleotide nucleotidyltransferase [Streptococcus uberis
           0140J]
          Length = 732

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/693 (40%), Positives = 437/693 (63%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFSTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP   + + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKAQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEEIVAAVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVSVFED 297
           E+      DL+ +  + EK  R    + +K+ + + + +     E+ +    ++  + E 
Sbjct: 243 EIVAKYNADLQKAVQVEEKKAREAATEAVKETVKAEYEAKFAEDENLATIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + AQ+  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRKVDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP   
Sbjct: 363 GDTQIIDGLDDEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRDGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIET 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V+I S
Sbjct: 543 TIPAPRPELAPTAPKIDTIQIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A I+  +E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R 
Sbjct: 603 SDQAAIDRTKEIITSLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           A  SDV++ G+ V VK++  DD+G++  SMK +
Sbjct: 663 ANVSDVLEVGEEVDVKVIKVDDKGRVDASMKAL 695


>gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8801]
 gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8802]
 gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801]
 gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802]
          Length = 718

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 304/695 (43%), Positives = 446/695 (64%), Gaps = 20/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATRATG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILISR+IDR +RPLF +  +++ Q+I   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           +++  AS A++ + +PF GP+   +V  I   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIAVIAARIPFFGPMAAVRVGLIGDDFIINPTYREIEIGDLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A   + +     +   EP  ++    S + +
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIQAQRDVMEALDIPLVIGEPPAVNEVLQSFISD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS- 293
             S+ IK+ L       +K  R +Q+D++K+  ++   +E         ++  E + VS 
Sbjct: 247 RASESIKKVLMQYNL--DKNARDEQLDEIKETAITNAIAELPEEDPVKVAATEEPKAVSN 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
           +++D+  K++R+ ++   VR+DGR  + VR IS++V LL +R HGS+LF RG TQ + + 
Sbjct: 305 LYKDLTKKLMRSQIITDGVRVDGRKLDEVRPISSRVCLLPRRVHGSALFARGLTQVLSLA 364

Query: 353 TLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q   D L       ++ HYNF P + GE   + +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQDLADDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAITP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+GD
Sbjct: 425 ILPPQEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGD 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  I+  A++QA   RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSMEIVAKAIEQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M + LS  R  L  + PR+  M I P+QI  VIG GGK I+GI EQTG+K++I DDG
Sbjct: 545 LDKMMETLSTPRKNLSPYAPRLLTMKIDPEQIGLVIGPGGKTIKGITEQTGSKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+    + E A+++I ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIAALEAEKAEKAKQIIYNMTRKLNEGEVYMGRVTRIIQIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV K  D V  GD V VK+ + D +G++ L+
Sbjct: 665 LAEGRVGKVEDEVAVGDEVIVKVREIDAKGRLNLT 699


>gi|225028434|ref|ZP_03717626.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
 gi|224954232|gb|EEG35441.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
          Length = 696

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 298/692 (43%), Positives = 434/692 (62%), Gaps = 8/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V    +E AGR L +E G++A Q++GA L  YG+TVVL+T       ++G DFFPL+V +
Sbjct: 2   VKQFSMELAGRTLTVEIGKVAAQANGAALMRYGDTVVLSTATASEKPREGIDFFPLSVEF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 62  EEKMYAVGKIPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMAVDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP V +M+ AS A  +S +PF+GP+ G ++  I+G++++NP  D+   S L L V+ T 
Sbjct: 122 CSPEVTAMLGASVATSISDIPFDGPIAGTRIGLIDGEFIVNPTADQQLVSDLALTVASTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           + V+M+E  AN++ ED +++AI   H   K VI+ I ++ + C KE    +  D  + L 
Sbjct: 182 EKVIMIEAGANEVPEDKMIEAIFKAHEVNKEVIKFIDRIVEECGKEKHEYEHVDTPEDLW 241

Query: 242 EEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            +M   I  E +  + F   K VR + I  +K+K+   ++ EH  W      +V++  Q 
Sbjct: 242 NDMVDFITPEAMEEAVFTDVKQVREENIRQIKEKLEERYAEEHEDWLPLIDDAVYK-FQK 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + 
Sbjct: 301 KTVRKMILKDHKRPDGRAINEIRPLAAEIDLLPRVHGSGMFTRGQTQIMTITTLAPLSEA 360

Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L +      +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 361 QKIDGLDANVTSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI KPVAGI+ GLV     DD+I+L+
Sbjct: 421 PYAIRTVSETLESNGSTSQASICASTLSLMAAGVPIKKPVAGISTGLVTGDSDDDYIVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++ +I+  A+ + K  R HIL + M 
Sbjct: 481 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTPDIIREAISRTKEAREHILTDVME 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+S  R  +GE+ P++  M + PD+I  +IG  GK I  I+++TG K++I+D+G V I 
Sbjct: 541 PVISTPRDHVGEYAPKIMQMHVDPDKISEIIGKQGKTINAIIDETGVKIDINDEGRVDIC 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 I+ A E+IR I +  E  KIY+G+VV++M+FGAFV     +DGL+HIS+LS ER
Sbjct: 601 GVDQVMIDRAMEIIRLIVEPVEAGKIYEGEVVRIMNFGAFVQLAPNKDGLIHISKLSKER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K  DVV  GD V VK+L+ D  G+I L+++
Sbjct: 661 VEKVEDVVNIGDKVKVKVLEIDKMGRINLALR 692


>gi|225551703|ref|ZP_03772647.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
 gi|225371730|gb|EEH01156.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
          Length = 722

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF P +V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPFSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           +SED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   +FSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNEFLFHKAFDDFEKEIVRSSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++ G KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFGVKVQIEQNGKIILFGDDDFKMQKAKER 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAF+    A++G +        S+  + R   ++  
Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671

Query: 664 VK---------------------EGDTVWVKLLDFDDRGKIKLSM 687
            +                     EG  + VK++D D  GKI L +
Sbjct: 672 FRFGGGGESIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 701

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/690 (42%), Positives = 442/690 (64%), Gaps = 16/690 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDKVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  A ++ ED++L+AI+    E K ++E I  + K   K  +  + +    + EE+ Q
Sbjct: 187 MIEAGAQEIPEDIMLEAIMTAQEEIKKIVEFIEGIVKEVGKPKMQYEKR---VVPEEIKQ 243

Query: 247 MIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---FEDIQ 299
            ++E      +    IP+K  R K++D+LK++++  F  E     E  ++ V     +++
Sbjct: 244 KVRELAYEKAYQYVQIPDKIERDKKLDELKEEVLKAFEGE----TEDTLLLVDDALYNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPYSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ K+   FI L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFITLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAKTNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL  +++ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDNKKLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
              +VVK GD V VK++  D  G+I LS K
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDRLGRIALSRK 689


>gi|182417579|ref|ZP_02948904.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
           5521]
 gi|237668128|ref|ZP_04528112.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378592|gb|EDT76120.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
           5521]
 gi|237656476|gb|EEP54032.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 701

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/693 (42%), Positives = 448/693 (64%), Gaps = 15/693 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           + +  E AGR LK+E G++   S+ A   +YG+TV++  V      ++G DFFPL+V Y+
Sbjct: 3   NVLSTEIAGRELKVEFGKVGMLSNAATFTSYGDTVIMTNVNASEEPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL  R +DR+IRPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTIRPLFPKGYRNDVQVVTTVVSVEKDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +P+  PV   QV  I+G+ V NP     ++  L L V  T++
Sbjct: 123 IPEILAINAASLALCLSSIPYTIPVAAVQVGLIDGKLVTNPDSKGREESILHLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV--IDSKDF 237
            V+M+E   N++ ED +++AI +G +EC+ +I    EA++K  K    EP++  ID    
Sbjct: 183 RVMMIEAGGNEIPEDKMIEAIEYGFDECQKIISFQEEAMAKFGKK-KDEPLLYTIDET-- 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             LE+E+     + ++ + +I +K  R   ID + +K+ + F+ ++   N G+I  V   
Sbjct: 240 --LEKEVKDFAFDMVKEAMYIMDKDERNAAIDAVNEKVKAEFAEKYPD-NLGDIKEVLYT 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K+VR ++L++K R DGR  + VR +  +VG+L RTHG+ LF RG TQ + V TLG+ 
Sbjct: 297 TQKKIVRNMLLNEKRRPDGRAFDEVRPLGCEVGILPRTHGTGLFTRGLTQVMTVATLGSI 356

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D +  TQ   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   
Sbjct: 357 SEIQILDGIDETQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEE 416

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFII 475
           +FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +
Sbjct: 417 EFPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSQEQV 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           ++DI G ED  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ RL I++++
Sbjct: 477 ITDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLQGFSFNVVENAIRDARKARLKIIDKI 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++ + E R  +  + P+ E+M I PD+IR+VIG GGKVI  I+  TG K++I +DGTV +
Sbjct: 537 NECMPEPRKDVSLYAPKTEVMTINPDKIRDVIGAGGKVINKIIADTGVKIDIKEDGTVFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +SS    + AA+++I  +T      ++Y G+V K+  FGAFV     ++GLVHIS+L+ E
Sbjct: 597 SSSDHEGVNAAKKIIEGLTKEVVAGEVYLGKVTKITTFGAFVEILPNKEGLVHISKLAKE 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+ + D++G+I LS K
Sbjct: 657 RVEKVEDVVSAGDEILVKVTEIDNQGRINLSRK 689


>gi|326791492|ref|YP_004309313.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
           DSM 5427]
 gi|326542256|gb|ADZ84115.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
           DSM 5427]
          Length = 705

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 298/693 (43%), Positives = 436/693 (62%), Gaps = 16/693 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           + AGR L +E G++A  ++G+    YG+T++LATVV   + K+G DFFPL+VNY+E+ Y+
Sbjct: 8   QLAGRELSVEIGKVAGLANGSATVRYGDTMILATVVAADAPKEGIDFFPLSVNYEEKFYS 67

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VG++PGGY++RESRP+E  IL SR+IDR +RPLF K Y+N+  +   V+  D + SP V 
Sbjct: 68  VGRLPGGYIKRESRPSEKAILTSRVIDRPMRPLFPKDYRNDVVITTTVLSVDQDCSPEVT 127

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+AAS  + +S +PF GPV   QV  ++G  V NP  +E Q S L L VS T+D V+M+
Sbjct: 128 AMIAASLVVDISDIPFAGPVGSVQVGLVDGNLVFNPNQEERQKSDLALTVSSTKDKVMMI 187

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-------E 241
           E  AN++ ED++ DAI+ GH   + V++ I  +   C K      ++D+ K         
Sbjct: 188 EAGANEVPEDIMFDAIMKGHEFNQQVVQFIEAIKADCGKA----KNEDYVKFGVPAEIYN 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +S +  + +  + F  +K VR  Q+  LK+K++   +      +   +   F   + K
Sbjct: 244 EIVSHIGDKQMEEAVFTDDKQVREVQLKALKEKVIVALTEAGKEEDLVYLEEAFYQFEKK 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L +  R DGR  + +R ++A+V L+ R HG+ LF RG TQ + V TL    + Q
Sbjct: 304 TVRRMILKESKRPDGRALDEIRSLAAEVDLVPRVHGTGLFTRGQTQVLTVTTLAALSEMQ 363

Query: 362 YVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L   +    +M HYNF P + GE     AP RREIGHG LA RA+ PVLP   +FP
Sbjct: 364 TLDGLDELEISKRYMHHYNFPPYSVGEARAPRAPGRREIGHGALAERALVPVLPTEQEFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSD 478
           Y +R VSE+  S+GS+S A++CGS+L+LM AGVPI  PVAGI++GLV  +  DDF++L+D
Sbjct: 424 YAIRTVSEVLSSNGSTSQASICGSTLSLMAAGVPIKAPVAGISVGLVTGETADDFVLLTD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GITA+QMDMKI G++  I+  AL+  K+ R +IL+E M K
Sbjct: 484 IQGLEDFFGDMDFKVGGTHKGITAIQMDMKIKGLTPEIIKGALENTKKARFYILDEIMLK 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  L  + P +  + I P++I  VIG  GK+I  I+E+TG K++I+DDG V I  
Sbjct: 544 AIPAVRDHLSPYAPVITQITIDPEKISEVIGPKGKMINRIIEETGVKIDIEDDGRVFICG 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   + + A +MI  I    E  + + G+V+++M+FGAFV     ++GLVHISQL+ ERV
Sbjct: 604 SDADKAQKAIQMIEGIARPIEEGQEFDGKVMRLMNFGAFVELVPGKEGLVHISQLAHERV 663

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AK  DVV  GD++ VK+++ D +G+I LS KV+
Sbjct: 664 AKVEDVVAVGDSIKVKVIEIDKQGRINLSHKVL 696


>gi|195941985|ref|ZP_03087367.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
           80a]
 gi|312147830|gb|ADQ30489.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           JD1]
          Length = 716

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 8   LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 67

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 68  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 127

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 128 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 187

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           + ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 188 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 246

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   YFSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 247 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 306

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 307 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 366

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 367 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 425

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 426 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 485

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 486 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 545

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 546 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 605

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAF+    A++G +        S+  + R   ++  
Sbjct: 606 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 665

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  + VK++D D  GKI L +
Sbjct: 666 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 710


>gi|312149591|gb|ADQ29662.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           N40]
          Length = 716

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 8   LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 67

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 68  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 127

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 128 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 187

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           + ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 188 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 246

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   YFSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 247 LKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 306

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 307 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 366

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 367 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 425

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 426 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 485

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 486 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 545

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 546 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 605

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAFV    A++G +        S+  + R   ++  
Sbjct: 606 IESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 665

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  + VK++D D  GKI L +
Sbjct: 666 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 710


>gi|224533452|ref|ZP_03674045.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           CA-11.2a]
 gi|224513414|gb|EEF83772.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           CA-11.2a]
          Length = 722

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           + ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   YFSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAFV    A++G +        S+  + R   ++  
Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  + VK++D D  GKI L +
Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|221217569|ref|ZP_03589038.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
 gi|225549375|ref|ZP_03770347.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           94a]
 gi|225550249|ref|ZP_03771208.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           118a]
 gi|221192515|gb|EEE18733.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
 gi|225369117|gb|EEG98571.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           118a]
 gi|225370003|gb|EEG99444.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           94a]
          Length = 722

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           + ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   YFSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAF+    A++G +        S+  + R   ++  
Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKLRDSKYGSGRFGNSNRY 671

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  + VK++D D  GKI L +
Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|313889611|ref|ZP_07823255.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122038|gb|EFR45133.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 742

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/687 (41%), Positives = 434/687 (63%), Gaps = 8/687 (1%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+E+ YA 
Sbjct: 21  FAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  +V+
Sbjct: 80  GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV YI+GQ+V+NP   + + SL +L V+G+++A+ MVE
Sbjct: 140 MFGSSLALSISDIPFNGPIAGVQVGYIDGQFVINPDKAQMEASLLELTVAGSKEAINMVE 199

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMI 248
             A +LSED++L+A++ GH   + +I    ++     KE   ++     + L+ E+    
Sbjct: 200 SGAKELSEDIMLEALLKGHQAIQELIAFQEEIVAAVGKEKAEVELLQVDTDLQAEIVTKY 259

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKK-----KMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
              L+ +  + EK  R    +++K+      M  +   ++ +    ++  + E ++   V
Sbjct: 260 NSQLQTAVQVEEKKAREAATEEVKEIVKAEYMERFAEDDNLATIMRDVAEILEQMEHAEV 319

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ + K+R DGR  + +R + AQV  L + HGS LF RG TQA+ V+TL    + Q +
Sbjct: 320 RRLITEDKIRPDGRQIDEIRPLDAQVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQII 379

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L    +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP    FPY +
Sbjct: 380 DGLDEEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSLEDFPYAI 439

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G E
Sbjct: 440 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGKNYTVLTDIQGLE 499

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++  R
Sbjct: 500 DHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEATIATPR 559

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V+I SS  A I
Sbjct: 560 PELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGMVQIFSSDQAAI 619

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E+I  +    +V ++Y+ +VV++  FGAFV+     D LVHIS+++  R A  SDV
Sbjct: 620 NRTKEIIAGLVREAKVGEVYRAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANVSDV 679

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++ G+ V VK++  D++G++  SMK +
Sbjct: 680 LEIGEEVDVKVIKVDEKGRVDASMKAL 706


>gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 702

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/680 (43%), Positives = 438/680 (64%), Gaps = 3/680 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G  L +  G++A Q++G  L   G+T++L T V     ++G DFFPL  +YQE+ YAVGK
Sbjct: 12  GSDLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE + ++  ILISR +DR +RPLF + + N+ QVI      D ++ P  ++ +
Sbjct: 72  IPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS AL +S +PF GPV    V Y++G++++NP  D+ ++ SLDL V+GT DA+ MVE  
Sbjct: 132 GASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDLTVAGTADAINMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           AN+LSED +L+A++  H E K +   I  +     KE + +     ++L+ ++     ED
Sbjct: 192 ANELSEDEMLEAMMVAHAEIKEICSFIQTIIDDIGKEKMEVAEDVETELQRKIKDKYTED 251

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           ++ S    +K  R   I+ +++K    F  E    +E EI    + I  K VR ++   K
Sbjct: 252 IKNSIRTTDKVQREDDINAIEEKCREDFLEEFPE-SEDEIHKTVDSIMKKEVRRMISIDK 310

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +SA+ GLL R HGS LF RG TQ + V+TLG+  +EQ +DS++  + 
Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370

Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
               +H YNF P   G++  +  P RRE+GHG LA RA+ PVLP T  FPYT+R+VSE+ 
Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTKDFPYTIRVVSEVL 430

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+DI G EDHLG MD
Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTDIQGLEDHLGDMD 490

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+QMDMKI GI++ ++  AL  A   RL IL+ ++  + + R  L ++ 
Sbjct: 491 FKVAGTKDGITALQMDMKISGINKEVLQEALADAHEARLKILDVITSAIDKPREDLSKYA 550

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + + P+++R+VIG GGK I  I+++TG K+  +DDG + +AS+     + A +MI
Sbjct: 551 PRIFSIDVDPEKVRDVIGAGGKTINKIIDETGVKIETEDDGHITVASNDGDSGKKAIQMI 610

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +SI   P+   IY+G+V ++M+FGAFV     ++GL+HISQ+ T+R  K  DV+K GD V
Sbjct: 611 KSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTEKVEDVLKIGDKV 670

Query: 671 WVKLLDFDDRGKIKLSMKVV 690
            VK+ + D +G+I LS K +
Sbjct: 671 RVKVTEIDRQGRINLSRKAL 690


>gi|187778995|ref|ZP_02995468.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
           15579]
 gi|187772620|gb|EDU36422.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
           15579]
          Length = 702

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/693 (41%), Positives = 447/693 (64%), Gaps = 12/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
           + V+MVE    ++ E+ + +AI+FG  ECK ++    EA++K  K    EP +  + +  
Sbjct: 182 ERVMMVEAGGQEIDEETMYNAIMFGFEECKNIVAFQEEAMAKFGK-TKDEPALYKADE-- 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+E+     + ++ + +I +K  R   +D +K+K+   FS ++      +I  V    
Sbjct: 239 EVEKEVKSFAFDMIKEAMYIMDKDERNAALDKVKEKISEEFSEKYEDKG-ADIKEVIYKT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRSISCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++
Sbjct: 358 DVQILDGIAEQESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  +D +   ++
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVI 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ 
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG + + 
Sbjct: 538 ECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVT 597

Query: 597 SSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   
Sbjct: 598 SNNEPEGVKKAIGIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFA 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 658 RVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|15595150|ref|NP_212939.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
           B31]
 gi|216264741|ref|ZP_03436733.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi
           156a]
 gi|218249358|ref|YP_002375304.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
 gi|223889336|ref|ZP_03623923.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
 gi|226321270|ref|ZP_03796798.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           Bol26]
 gi|81343023|sp|O51745|PNP_BORBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702621|sp|B7J0Q1|PNP_BORBZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2688743|gb|AAC67149.1| polyribonucleotide nucleotidyltransferase (pnpA) [Borrelia
           burgdorferi B31]
 gi|215981214|gb|EEC22021.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi
           156a]
 gi|218164546|gb|ACK74607.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
 gi|223885257|gb|EEF56360.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
 gi|226233302|gb|EEH32053.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           Bol26]
          Length = 722

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           + ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   YFSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAF+    A++G +        S+  + R   ++  
Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  + VK++D D  GKI L +
Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|226320852|ref|ZP_03796404.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           29805]
 gi|226233718|gb|EEH32447.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           29805]
          Length = 722

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           + ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   YFSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 253 LKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAFV    A++G +        S+  + R   ++  
Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  + VK++D D  GKI L +
Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|183220916|ref|YP_001838912.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911012|ref|YP_001962567.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|226702658|sp|B0SH22|PNP_LEPBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702659|sp|B0SQH8|PNP_LEPBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167775688|gb|ABZ93989.1| Polyribonucleotide nucleotidyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779338|gb|ABZ97636.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase; PNPase) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 696

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/685 (43%), Positives = 443/685 (64%), Gaps = 6/685 (0%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           W    + LETG+ A+Q+ G+V+   G  V+LATV      K+GQDFFPLT  Y E+ Y+V
Sbjct: 9   WGRDSITLETGKWAKQAHGSVVYKTGNLVLLATVCAAEEPKEGQDFFPLTCEYTEKAYSV 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+ PGGY +RE++P E+E+L+SR++DR IRP+F + Y +E Q+++ V+  D + S    +
Sbjct: 69  GRFPGGYFKREAKPAEHEVLLSRILDRPIRPMFPEGYFSEVQLLVQVLSADKQVSVQGHA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           + AASAAL +S +PF GP+ GA++  I G+++LNP  +E  +  LDL V+GT+DA++M+E
Sbjct: 129 INAASAALSVSSIPFAGPIAGARIGRIGGEFILNPTNEEITKSDLDLVVAGTKDAIVMIE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKLEEEMSQM 247
            EA+++S++ ++ A+ F   + K  +    +LAK     K+ +V+ + D   L  ++ + 
Sbjct: 189 GEASEISKEDMMAALRFAQEQLKFAVAMQEELAKKHGTVKKEVVLKAPD-KDLHAKIREF 247

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRTV 306
             + L ++    +K  R   I  + K+ V +F +  +  ++ + +  F  +++ +VVR +
Sbjct: 248 AFDRLTLANKNADKAKRNDDIKAINKETVEHFKTLLAPEDKTKDIKHFLHELEYEVVREL 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L + +R DGR ++ +R IS ++ +L   HGS++F RG TQ++ V+TLGT  D Q  ++L
Sbjct: 308 VLGEGIRFDGRKTDEIRQISCEIDVLPGPHGSAVFTRGQTQSLGVMTLGTTSDNQRYETL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G++  +FM+HYNF   + GEV R   P RREIGHG LA RAI  VLP   +FPY +R+V
Sbjct: 368 EGSKEKNFMLHYNFPAFSVGEVRRNSGPGRREIGHGNLAERAIKKVLPTQTEFPYVIRLV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDISGDEDH 485
           SEI ES+GSSSMA+VC  +LALM  GVPIS  V+GIAMGL  D    F +LSDI+G EDH
Sbjct: 428 SEILESNGSSSMASVCSGTLALMAGGVPISGAVSGIAMGLFSDEKGRFAVLSDIAGIEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFK+AGT  GITA QMD+K+ G+   ++  A++QA+ GR HIL EM+K +S  +  
Sbjct: 488 FGDMDFKLAGTKKGITAFQMDLKVNGLGLEVLQKAIEQAEVGRDHILGEMNKAISSVKGN 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L E  PR+    IP D+I  +IG GGK+IR I+EQ+G+++++DD G V IAS S    E 
Sbjct: 548 LSENAPRITQKQIPKDRIGELIGPGGKMIRAIIEQSGSEISVDDSGKVTIASPSEESKEK 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A  MI  I +  EV KIY G + ++ DFGAFV     ++GL HIS+L  +RV    D+V 
Sbjct: 608 AIAMIDGIFEEIEVGKIYDGVIKRIADFGAFVEILPGKEGLCHISKLDVKRVQSVRDIVS 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
           EGD + VK++  D  GKI LS K V
Sbjct: 668 EGDKIKVKVISVDKMGKIDLSRKDV 692


>gi|224533071|ref|ZP_03673676.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           WI91-23]
 gi|224512007|gb|EEF82403.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           WI91-23]
          Length = 722

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           + ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+   +  D
Sbjct: 194 VGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDELRDFVYAD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   YFSS  + +  NE      F+D + ++VR+ +L+
Sbjct: 253 LKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEIVRSSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++
Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKER 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV 663
           I SI   P+V +IY+G V K+  FGAF+    A++G +        S+  + R   ++  
Sbjct: 612 IESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGRFGNSNRY 671

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  + VK++D D  GKI L +
Sbjct: 672 SRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|29840519|ref|NP_829625.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila caviae
           GPIC]
 gi|75539485|sp|Q822C1|PNP_CHLCV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29834868|gb|AAP05503.1| polyribonucleotide nucleotidyltransferase [Chlamydophila caviae
           GPIC]
          Length = 694

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 299/687 (43%), Positives = 427/687 (62%), Gaps = 21/687 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V+YQE+  ++GK
Sbjct: 13  GKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ANLEEPVDFLPLRVDYQEKFSSIGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
             GG+++RE RPTE EIL SR+IDRS+RP        + QV+  V  +D  + P  +++ 
Sbjct: 72  TLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQVLSYVWSYDGVTLPDPIAIC 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
             SAAL +S +P    V G +V ++N  +V+NP + + D   ++L ++GT++A+LM+E  
Sbjct: 132 GVSAALAISDIPQISVVAGVRVGFVNNSWVVNPTKAEMDVSRMELVLAGTENAILMIEGH 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            + L+E+ V++AI FGH     +  AI  L +   K+    +S     L EE+       
Sbjct: 192 CDFLTEEQVIEAIEFGHKHIATICRAIKDLQQKVGKKK---NSDAIVPLPEEVQS----- 243

Query: 252 LRVSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             V+ F+  K+    +I +          L+K++V  F  E+  +    I + F+  ++ 
Sbjct: 244 -SVNTFVEGKFADLLKIKEKKAFEAASKQLEKEIVEKFLEENEIFTALNIKTAFKQAKSD 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++ ++ VR DGR   T+R IS     L RTHGS LF RG+TQ + V TLG+    Q
Sbjct: 303 YMRALIREQSVRSDGRAITTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP  A+FPY
Sbjct: 363 RYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPAKFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D D   ILSDISG
Sbjct: 423 TIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDNDHVTILSDISG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED+LG MDFKVAG   GITA QMD+K+ GI+  IM  AL QAK GR HIL+ M + L+ 
Sbjct: 483 LEDYLGDMDFKVAGNTEGITAFQMDIKVEGITPTIMQAALAQAKAGRQHILDIMKEALAA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D G V I++SS  
Sbjct: 543 PKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSGLVSISASSPQ 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            IE A+ MI  +    EV KIY+G+V  ++ FGAFV     ++GL HIS+ S +R+    
Sbjct: 603 AIEKAKSMIEGLVGEVEVGKIYEGRVTSIVPFGAFVEILPGKEGLCHISEFSKQRIENVG 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           D VK+GD + VKLL  +++G+ KLS K
Sbjct: 663 DFVKQGDILAVKLLSINEKGQYKLSHK 689


>gi|322374185|ref|ZP_08048718.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
 gi|321276890|gb|EFX53962.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
          Length = 745

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/693 (40%), Positives = 432/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+ +AGRPL +E G++A+Q++GAV+  YG+T VL+T V  + +    DFFPL VNY+
Sbjct: 4   QTFEMTFAGRPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATA-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   D++   LDL V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSHLDLTVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++     + L+ 
Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDADLKA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+     + L  +  + EK  R      +K+++++ +    +  ++ +     +  + E 
Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLASYQERFAEDDDKDTILRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R  L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I S
Sbjct: 543 TIAEPRPGLAPTAPKIDSIQIPVDKIKIVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ +R 
Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DVVK GD V VK++  D++G++  S+K +
Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695


>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
 gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
          Length = 701

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSKLHLVVSGTKDRVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244
           M+E  A ++ ED++++AI+    E K ++E I  + K   K  +     ++ K  + EE+
Sbjct: 187 MIEAGAKEVPEDIMIEAIMTAQEEIKKIVEFIEGIVKEVGKPKM-----EYQKRIVPEEI 241

Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
            Q ++E      +    IP+K  R K++D+LK+++   F  E       E + + +D   
Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT
Sbjct: 297 NLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + + Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P  
Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ K+   FI+
Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFIL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKVAGT  GITA+Q+D+KI G++  I+  AL QAK  RL IL+ M
Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             ++ + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +
Sbjct: 537 QTIIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+        A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL  +
Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDEK 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    +VVK GD V VK++  D  G++ LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689


>gi|257063808|ref|YP_003143480.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Slackia heliotrinireducens DSM 20476]
 gi|256791461|gb|ACV22131.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Slackia heliotrinireducens DSM 20476]
          Length = 743

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 304/694 (43%), Positives = 427/694 (61%), Gaps = 24/694 (3%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           ++  E  G+    ETG +A+Q+ GAVL   GET VL T V     KD  DFFPLTV++ E
Sbjct: 5   SLAFELYGKEYAFETGELAKQATGAVLVKQGETTVLVTAVISAQEKD-YDFFPLTVDFME 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGGYL+RE + ++   L +RMIDR IRP F+  +K E  V+      D ++ 
Sbjct: 64  KMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAIDGQNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           P  + +  ASAALM+   PF+GP    ++  +    ++++NP  +E + S L+L ++GT+
Sbjct: 124 PDCICVGGASAALMIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTIAGTR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKL 240
           D + MVE  AN+++E+ +L A+ FG        E  ++   M A EP    I   D S  
Sbjct: 184 DYISMVEAGANEVTEEDMLAAMNFGQEAIAAFCEKQAEFLAMVAPEPREWPIHVPDASIA 243

Query: 241 E------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK--KMVSYFSSEHSSWNEGEIV 292
           E      +EMS  +K+         +K  R  ++++LK   K   +   E ++W   +I 
Sbjct: 244 ERVDAHFDEMSAALKD--------ADKQSRIAKVEELKAAIKANDFSEEEQAAWGS-DIA 294

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  + ++   +R ++++   R DGR ++ +R +  + G L R HGS LF RG TQA+ V 
Sbjct: 295 AALKSLEKHAMRRMVIETGERADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVC 354

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   + Q +D++       +M  YNF P  TGEV RMGAP RRE+GHG LA RAI PV
Sbjct: 355 TLGLLNEAQRLDTIDPATGKRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPV 414

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPY +R+VSEI ES+GSSSMA+ CGS LALMDAGVPI  PV+GIAMGL+K+ D 
Sbjct: 415 LPSEDEFPYAIRVVSEILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDG 474

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            +ILSDI G ED LG MDFKV GT +GITA+QMD K  G+S  I+  ALQQAK GR HIL
Sbjct: 475 VVILSDIQGLEDFLGDMDFKVTGTANGITALQMDNKARGLSTEILGRALQQAKEGRAHIL 534

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N M   +   R +L +  PR+E + IP D+IR VIG GG+ IRGI + TGA + I +DGT
Sbjct: 535 NAMLAEIPGPREELRDTAPRIETIHIPVDKIREVIGKGGETIRGIQDSTGASIEIQEDGT 594

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS       AA+  + +I   PEV ++Y+G VV +  FGAFV    ++DGL+HIS++
Sbjct: 595 VHIASVDQEAGRAAKAAVEAIVKEPEVGEVYEGTVVGIQTFGAFVKLTPSKDGLLHISRM 654

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
           +  RV+K  DV+  GDTV V++++ D + GK+ L
Sbjct: 655 ANGRVSKVEDVLNMGDTVKVQVIEIDPKSGKVSL 688


>gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
          Length = 702

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/680 (43%), Positives = 437/680 (64%), Gaps = 3/680 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G  L +  G++A Q++G  L   G+T++L T V     ++G DFFPL  +YQE+ YAVGK
Sbjct: 12  GSDLSITIGKVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE + ++  ILISR +DR +RPLF + + N+ QVI      D ++ P  ++ +
Sbjct: 72  IPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELE 191
            AS AL +S +PF GPV    V Y++G++++NP  DE +  SLDL V+GT DA+ MVE  
Sbjct: 132 GASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSLDLTVAGTADAINMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           AN+LSED +L+A++  H E K +   I  +     KE + +     ++L+ ++     ED
Sbjct: 192 ANELSEDEMLEAMMVAHAEIKEICGFIQTIIDDIGKEKMEVAEVVETELQRKIKDKYTED 251

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           ++ S    +K  R   I+ +++K    F  E    +E EI    + I  K VR ++   K
Sbjct: 252 IKNSIRTTDKVQRENDINTIEEKCKEDFLEEFPE-SEDEIHKTVDSIMKKEVRRMISIDK 310

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +SA+ GLL R HGS LF RG TQ + V+TLG+  +EQ +DS++  + 
Sbjct: 311 IRPDGRKMDEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370

Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
               +H YNF P   G++  +  P RRE+GHG LA RA+ PVLP T  FPYT+R+VSE+ 
Sbjct: 371 TKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTNDFPYTIRVVSEVL 430

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ +   IL+DI G EDHLG MD
Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEENSISILTDIQGLEDHLGDMD 490

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+QMDMKI GI++ ++  AL  A + RL IL+ ++  + + R  L ++ 
Sbjct: 491 FKVAGTKDGITALQMDMKISGINKEVLQEALADAHKARLEILDVITSAIDKPREDLSKYA 550

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS+     + A +MI
Sbjct: 551 PRIFSIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASNDGESGKKAIQMI 610

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +SI   P+   IY+G+V ++M+FGAFV     ++GL+HISQ+ T+R  K  DV+K GD V
Sbjct: 611 KSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTEKVEDVLKIGDKV 670

Query: 671 WVKLLDFDDRGKIKLSMKVV 690
            VK+ + D +G+I LS K +
Sbjct: 671 RVKVTEIDRQGRINLSRKAL 690


>gi|166368080|ref|YP_001660353.1| polynucleotide phosphorylase/polyadenylase [Microcystis aeruginosa
           NIES-843]
 gi|189037309|sp|B0JYC3|PNP_MICAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166090453|dbj|BAG05161.1| polyribonucleotide nucleotidyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 717

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/692 (42%), Positives = 442/692 (63%), Gaps = 15/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   GET VL T    ++ ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKA-REGVDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  IL  R+IDR +RPLF    +++ QV+   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKAILTGRLIDRPLRPLFPNWMRDDIQVVATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+G+PF+GP+   +V  +  ++++NP   E   G LDL V+G+ + V+M
Sbjct: 127 LAVTGASVAVLLAGIPFQGPMAAVRVGLLGDEFIINPTYKEIHNGELDLVVAGSPEGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242
           +E  ANQL E  +++AI FG+   + +I A  +L       +  +E   ++    + L E
Sbjct: 187 IEAGANQLPERDIIEAIDFGYEAVRDLITAQRELIDQLGIPLVTREAPAVNETVQNFLRE 246

Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS----SWNEGEIV-SVFE 296
           +  + IK+ L + +    E+  + + I++  K+ ++    E +    +  E +++ ++F+
Sbjct: 247 QAKEEIKQILSQFTLSKTERDEKLEAIENRIKETITALPDEDTLKAPTLEEPKLIGNLFK 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355
           D+  K++R  +++  VR+DGR  + VR IS +VG+L +R HGS LF RG TQ + + TLG
Sbjct: 307 DLTKKLMRAQIIEDGVRVDGRQLDEVRPISCRVGVLPRRVHGSGLFNRGLTQVLSIATLG 366

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           T  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA RAI PVLP
Sbjct: 367 TPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERAIVPVLP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+ KPV+G AMGL+K+G++  
Sbjct: 427 PQEEFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLIKEGEEVR 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A++QA   R HIL +
Sbjct: 487 ILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIPGLSMEVVAKAIEQALPARKHILEK 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   L + R +L    PR+  + I PD I  VIG GGK ++GI EQTG K++IDDDGTV 
Sbjct: 547 MLATLEKPRTELSPHAPRLLTIKIDPDLIGLVIGPGGKTVKGITEQTGTKIDIDDDGTVT 606

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I+S+   + E A+ +I ++T      ++Y G+V +++  GAFV     ++G++HISQL+ 
Sbjct: 607 ISSTDGEQAEKAKRLIYNMTRKLNEGEVYLGRVTRIIQIGAFVEVLPGKEGMIHISQLAE 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            RV K  D V  GD V VK+ + D +G++ L+
Sbjct: 667 GRVGKVEDEVAVGDEVLVKVREIDSKGRLNLT 698


>gi|323126485|gb|ADX23782.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 710

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 280/694 (40%), Positives = 438/694 (63%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ETIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|306826612|ref|ZP_07459917.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           ATCC 10782]
 gi|304431190|gb|EFM34194.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           ATCC 10782]
          Length = 710

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 280/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|153939959|ref|YP_001391710.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum F
           str. Langeland]
 gi|187610258|sp|A7GG00|PNP_CLOBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152935855|gb|ABS41353.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum F
           str. Langeland]
          Length = 702

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 446/694 (64%), Gaps = 14/694 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF   Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPNGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE    ++ E+ + +AI+FG  ECK ++    EA++KL K   K+  V+   D  
Sbjct: 182 ERIMMVEAGGQEIDEETMYNAILFGFEECKNIVAFQEEAVAKLGK--TKDEQVLYKAD-E 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+E+ +   + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    
Sbjct: 239 EVEKEVKRFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSQKYEDKG-ADIKEVIYKT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR ++L++  R DGR  + VR I  +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEIVRNMLLNEDRRPDGRAFDEVRPIGCEVGILPRTHGTGLFTRGLTQVMTVATLGALG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 DVQILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF---II 475
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   DD     +
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLIT-SDDLEREKV 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           ++DI G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++
Sbjct: 477 ITDIQGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKI 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + + E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG + +
Sbjct: 537 KECIPEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFV 596

Query: 596 ASSSLAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            S++  E ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L  
Sbjct: 597 TSNNEPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDF 656

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            RV K  DVV  GD + VK+ D D++G+I LS K
Sbjct: 657 ARVEKVEDVVSVGDEILVKVTDIDNQGRINLSRK 690


>gi|257096732|sp|B2S1E9|PNP_BORHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 717

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/705 (41%), Positives = 440/705 (62%), Gaps = 37/705 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D + MVE  AN+
Sbjct: 134 AAVFLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251
           +SE+V+L AI   +   K +     +   +     K P+  +   F + ++E+  +I  +
Sbjct: 194 VSEEVLLSAIDKAYEYIKQICNLQKEFVSIIGEREKLPLAYEEGVF-EFKDELKNLIYSE 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  +K+K   +FSS  + +  NE      F+D + ++VR  +L+
Sbjct: 253 LKDACFVKGKLNRDKAIKLVKQKAYEHFSSISQVNEDNEFLFYKAFDDFEREIVRKSILE 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR S  +RDI A+V LL+RTHGSSLF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 NNLRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RRE+GHG LA+R++  +LP+   FPYT+R+VSEI
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREVGHGHLAQRSLEAMLPKKDDFPYTIRVVSEI 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ DGD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V+S SR  +   
Sbjct: 492 DFKVAGTKNGITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDSVISRSRDDISVN 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +   +++ A+  
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQKAKAK 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV------ 663
           I SI   P++ +IY G V K+  FGAF+     ++G   +S  +  R  +  D+      
Sbjct: 612 IESIVREPKIGEIYDGIVKKINSFGAFIELTPIKEGF--LSNRARSRDDRYGDMRHSRYG 669

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  V VK+ D D  GKI+L +
Sbjct: 670 SGRHSRYGRDNRNTFGMNPPRLEEGQIVKVKISDIDKFGKIELEL 714


>gi|187918659|ref|YP_001884225.1| polynucleotide phosphorylase/polyadenylase [Borrelia hermsii DAH]
 gi|119861507|gb|AAX17302.1| polyribonucleotide nucleotidyltransferase [Borrelia hermsii DAH]
          Length = 727

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/705 (41%), Positives = 440/705 (62%), Gaps = 37/705 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y E+ YA GKIPG
Sbjct: 24  LILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIPG 83

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  + P +V M AA 
Sbjct: 84  GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 143

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D + MVE  AN+
Sbjct: 144 AAVFLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 203

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251
           +SE+V+L AI   +   K +     +   +     K P+  +   F + ++E+  +I  +
Sbjct: 204 VSEEVLLSAIDKAYEYIKQICNLQKEFVSIIGEREKLPLAYEEGVF-EFKDELKNLIYSE 262

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  +K+K   +FSS  + +  NE      F+D + ++VR  +L+
Sbjct: 263 LKDACFVKGKLNRDKAIKLVKQKAYEHFSSISQVNEDNEFLFYKAFDDFEREIVRKSILE 322

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR S  +RDI A+V LL+RTHGSSLF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 323 NNLRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGD 382

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RRE+GHG LA+R++  +LP+   FPYT+R+VSEI
Sbjct: 383 KRLNFMLHYNFPPFSVGETGRL-MTGRREVGHGHLAQRSLEAMLPKKDDFPYTIRVVSEI 441

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ DGD +++LSDI G+EDHLG M
Sbjct: 442 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSDILGEEDHLGDM 501

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V+S SR  +   
Sbjct: 502 DFKVAGTKNGITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDSVISRSRDDISVN 561

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +   +++ A+  
Sbjct: 562 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQKAKAK 621

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV------ 663
           I SI   P++ +IY G V K+  FGAF+     ++G   +S  +  R  +  D+      
Sbjct: 622 IESIVREPKIGEIYDGIVKKINSFGAFIELTPIKEGF--LSNRARSRDDRYGDMRHSRYG 679

Query: 664 ---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                ++EG  V VK+ D D  GKI+L +
Sbjct: 680 SGRHSRYGRDNRNTFGMNPPRLEEGQIVKVKISDIDKFGKIELEL 724


>gi|24378670|ref|NP_720625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus mutans
           UA159]
 gi|81452619|sp|Q8DWB2|PNP_STRMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24376532|gb|AAN57931.1|AE014867_3 polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           UA159]
          Length = 730

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/665 (42%), Positives = 424/665 (63%), Gaps = 16/665 (2%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AG+ L +E G++A+Q++GA L  YG++ VL+  V  + +  G DFFPL +NY+E+ YA 
Sbjct: 10  FAGKKLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTG-DFFPLQINYEEKRYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++S  + +
Sbjct: 69  GKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++GQYV+NP  +E + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244
             A +LSED++L+A++ GH   + +I    E I+ + K  A+ E + +D+     L+ E+
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVRELIAFQEEIIAAVGKEKAEVELLQVDAD----LQAEI 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQ 299
                 DL+ +  I EK  R    + +K+ + + +   ++   E +     +  + E ++
Sbjct: 245 VGKYNADLQKAVQIEEKKAREIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILEQME 304

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL    D
Sbjct: 305 HAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGD 364

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP    F
Sbjct: 365 TQIVDGLDEEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEAF 424

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI
Sbjct: 425 PYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDI 484

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + KV+
Sbjct: 485 QGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEKVI 544

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              RL+L    P+++ + +  D+I+ VIG GG+ I  I+E+TG K++ID+DG + I SS 
Sbjct: 545 PAPRLELAPTAPKIDTIKVDVDKIKIVIGKGGETIDKIIEETGVKIDIDEDGNIAIYSSD 604

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I   +E+I S+    +V +IY+ +VV++  FGAFVH     D LVHIS+++  R  K
Sbjct: 605 QEAINRTKEIIASLVREAKVGEIYEAEVVRIEKFGAFVHLFDKTDALVHISEIAWTRTNK 664

Query: 660 TSDVV 664
             DV+
Sbjct: 665 VEDVL 669


>gi|159028376|emb|CAO87274.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 717

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/692 (42%), Positives = 442/692 (63%), Gaps = 15/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   GET VL T    ++ ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKA-REGVDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  IL  R+IDR +RPLF    +++ QV+   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKAILTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+G+PF+GP+   +V  +  ++++NP   E   G LDL V+G+ + V+M
Sbjct: 127 LAVTGASVAVLLAGIPFQGPMAAVRVGLLGDEFIINPTYKEIHNGELDLVVAGSPEGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242
           +E  ANQL E  +++AI FG+   + +I A  +L       +  +E  V++    + L+E
Sbjct: 187 IEAGANQLPERDIIEAIDFGYEAVRDLITAQRELIDQLGIPLVTREAPVVNETVQNFLKE 246

Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS----SWNEGEIV-SVFE 296
           +  + IK+ L + +    E+  + + I++  K+ ++    E      +  E +++ ++F+
Sbjct: 247 QAKEEIKQILCQFTLSKTERDEKLEAIENRIKETITALPDEDPLKAPTLEEPKLIGNLFK 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355
           D+  K++R  +++  VR+DGR  + VR IS  VG+L +R HGS LF RG TQ + + TLG
Sbjct: 307 DLTKKLMRAQIIEDGVRVDGRKLDEVRPISCLVGVLPRRVHGSGLFNRGLTQVLSIATLG 366

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           T  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA RAI PVLP
Sbjct: 367 TPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERAIVPVLP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+ KPV+G AMGL+K+G++  
Sbjct: 427 PQEEFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLIKEGEEVR 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G++  ++  A++QA   R HIL +
Sbjct: 487 ILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIPGLTMEVVAKAIEQALPARKHILEK 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   L + R +L    PR+  + I PD I  VIG GGK ++GI EQTG K++IDDDGTV 
Sbjct: 547 MLATLEKPRTELSPHAPRLLTIKIDPDLIGLVIGPGGKTVKGITEQTGTKIDIDDDGTVT 606

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I+S+   + E A+ +I ++T      ++Y G+V +++  GAFV     ++G++HISQL+ 
Sbjct: 607 ISSTDGEQAEKAKRLIYNMTRKLNEGEVYLGRVTRIIQIGAFVEVLPGKEGMIHISQLAE 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            RV K  D V  GD V VK+ + D +G++ L+
Sbjct: 667 GRVGKVEDEVAVGDEVLVKVREIDSKGRLNLT 698


>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 701

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/693 (42%), Positives = 440/693 (63%), Gaps = 22/693 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       + G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244
           M+E  A ++ ED++L+AI+    E K ++E I  + +   K  +     ++ K  + EE+
Sbjct: 187 MIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPEEI 241

Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
            Q ++E      +    IP+K  R K++D+LK+++   F  E       E + + +D   
Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT
Sbjct: 297 NLEKEIVRKMVAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + + Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P  
Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+
Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKVAGT  GITA+Q+D+KI G++  I+  AL QA+  RL IL+ M
Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAREARLKILDFM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +
Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+        A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   
Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    +VVK GD V VK++  D  G++ LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689


>gi|94995150|ref|YP_603248.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10750]
 gi|123080074|sp|Q1J4N2|PNP_STRPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94548658|gb|ABF38704.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 710

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 280/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  V +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPVAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 701

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244
           M+E  A ++ ED++L+AI+    E K ++E I  + +   K  +     ++ K  + +E+
Sbjct: 187 MIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPDEI 241

Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
            Q ++E      +    IP+K  R K++D+LK+++   F  E       E + + +D   
Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT
Sbjct: 297 NLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + + Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P  
Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+
Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M
Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +
Sbjct: 537 QTVIDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+        A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   
Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    +VVK GD V VK++  D  G++ LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689


>gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 701

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSGTKDRVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244
           M+E  A ++ ED++L+AI+    E K ++E I  + +   K  +     ++ K  + +E+
Sbjct: 187 MIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPDEI 241

Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
            Q ++E      +    IP+K  R K++D+LK+++   F  E       E + + +D   
Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT
Sbjct: 297 NLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + + Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P  
Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+
Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M
Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +
Sbjct: 537 KTVIDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+        A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   
Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    +VVK GD V VK++  D  G++ LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689


>gi|167745605|ref|ZP_02417732.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
 gi|167654917|gb|EDR99046.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
          Length = 713

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/688 (42%), Positives = 435/688 (63%), Gaps = 11/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L +E GR+A Q++GA    YG+TVVL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 25  MELAGRTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKQY 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+L+RE+RP+EN IL  R+IDR +RPLF K Y+N+  +   VM  D + SP +
Sbjct: 85  AVGKIPGGFLKREARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPDCSPEL 144

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP     V  I+G++++NP   + + S + L V+ T++ V+M
Sbjct: 145 TAMLGSAIATCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSEMSLTVASTREKVIM 204

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEMS 245
           +E  AN++ ED++++AI   H   K +I  I  +   C KE    +  +  +   E+ +S
Sbjct: 205 IEAGANEVPEDIMIEAIFKAHEVNKEIIAFIDTIVAECGKEKHEYEHHEIDQEMYEDMVS 264

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVR 304
            +  E +  + F  EK VR + I  ++ K+   ++      ++ GE V  F   Q K VR
Sbjct: 265 FITPEAMEEAVFTDEKQVREENIRGIEDKLAERYADNEEWLSQIGEAVYTF---QKKTVR 321

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L  K R DGRD   +R ++A+V  L R HGS+LF RG TQ + V TLG+  + Q +D
Sbjct: 322 KMILKDKKRPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLD 381

Query: 365 SLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FPY +
Sbjct: 382 GMDQDETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPTEEEFPYAI 441

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDISG 481
           R VSEI ES+GS+S  ++C SSL+LM AGVP+  PVAGI++GLV     DD++IL+DI G
Sbjct: 442 RTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGDSDDDYLILTDIQG 501

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLS 540
            ED  G MDFKVAGTD GITA+QMD+KI G+++ I+  A+ + K  R +IL++ M+ V+ 
Sbjct: 502 LEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVMNPVIG 561

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+R  +G++ P++    I P++I  VIG  GK I  I+++TG K++ID+ G V I S   
Sbjct: 562 EARDHVGKYAPKISQYTIDPEKISEVIGKQGKTINAIIDETGVKIDIDESGRVDILSEDQ 621

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A  +I+SI +   V  IY+G+VV++M FGAFV     +DGL+HIS+L+ +RV K 
Sbjct: 622 EMIDKAIGIIKSIVEPLNVGDIYEGEVVRIMQFGAFVQVSPNKDGLIHISKLAKDRVEKV 681

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            DVV  GD V VK+L+ D  G+I L ++
Sbjct: 682 EDVVNIGDRVAVKVLEIDKMGRINLKLE 709


>gi|298490374|ref|YP_003720551.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
 gi|298232292|gb|ADI63428.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
          Length = 718

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 305/694 (43%), Positives = 435/694 (62%), Gaps = 19/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T    ++ ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSQA-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ QVI   +  D +  P V
Sbjct: 67  AAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIAFTLSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E D G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIDAGDLDLIVAGSPDGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A   L      K+  + P  +D    + + +
Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIQAQLDLVEELGLKIVQEAPPGVDQTLENYIHD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEH-----SSWNEGEIVSV 294
             S  IK+ L  + F   K  R   +D +K   K  +   S E      ++ N   + + 
Sbjct: 247 CASAEIKKIL--AQFALTKTERDAALDVVKDGIKAEIEALSEEDPIRVAATANSKALGNT 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+DI   ++R  +L+  VR+DGR  + VR +S QV +L +R HGS LF RG TQ +   T
Sbjct: 305 FKDITKYLMRRQILEDNVRVDGRKLDQVRPVSCQVNVLPKRVHGSGLFNRGLTQVLSCCT 364

Query: 354 LGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           LGT  D Q + D L   Q   ++ HYNF P + GE   M AP RREIGHG LA RAI PV
Sbjct: 365 LGTPGDAQNLNDDLQVDQHKRYLHHYNFPPFSVGETKPMRAPGRREIGHGALAERAILPV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD+
Sbjct: 425 LPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +L+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A+ QAK  RL+IL
Sbjct: 485 VRVLTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKISGLSLEVIAQAVHQAKAARLNIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M + +   RL+   F PR+  + I PD I  VIG GGK I+GI E+TGAK++I+DDGT
Sbjct: 545 DKMLQTIETPRLETSPFAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDDGT 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I++      + AR +++ +T       +Y G+V +++  GAFV F   ++G++HISQL
Sbjct: 605 VTISAVDEGRAKRARNIVQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIHISQL 664

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV K  D V  GD V VK+ + D++G+I L+
Sbjct: 665 ADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698


>gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 729

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 313/720 (43%), Positives = 451/720 (62%), Gaps = 38/720 (5%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTV 61
           V T EI+   G+ LK+ETG++A+Q+DG+ + +  ET+VLATVV  +      Q+FFPL V
Sbjct: 2   VFTKEIDLGQGKVLKIETGKMAKQADGSAVVSLEETMVLATVVSKKDAPPANQNFFPLQV 61

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+  A GK PGG+++RE RP++ EIL +R+IDR++RPLF   Y  ETQ+I+ V+  D
Sbjct: 62  EYREKYSAAGKFPGGFIKREGRPSDKEILSARLIDRALRPLFPDGYYQETQIIVTVISSD 121

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
             +   V+  +AAS ALM S +PFE P+   +V  ING +++ P + E ++  +D+ + G
Sbjct: 122 QLNDADVLGGIAASCALMASDIPFENPMSEVRVGRINGDFLIFPHVQELEESDMDICIGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI--D 233
           T D + M+E E +++SE  ++ AI FGH+  + + EA  +L ++  K     EP +I  D
Sbjct: 182 TADTICMLEGEMSEISEAEMIGAIKFGHDVIRKICEAQRELREVVGKPKRVFEPTIIPDD 241

Query: 234 SKDF------SKLEEEMSQMIKEDLRV----------SCFIPEKYVRCKQIDDLKKKMVS 277
            K        ++L+E   Q +K++ R           S  +  KY       ++  ++++
Sbjct: 242 MKAAIREVAEARLKELAYQPLKKEERADKTAEVYADASAAVLRKYKA-----EITDEILA 296

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               +    NE  I     DI+  V+R ++L    R+DGR  + +R IS ++GL+ R HG
Sbjct: 297 ENPEKAIYLNEKAINDYIHDIEKHVMREMILADAKRLDGRRLDEIRPISIELGLIPRAHG 356

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQA+V +TLGT++D Q  D+L       FM+HYNF P + GEV RMG+ SRR
Sbjct: 357 SALFTRGETQALVTLTLGTKKDAQLTDTLFDDADKRFMLHYNFPPFSVGEVGRMGSVSRR 416

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RAI  V+P    FPYT+R+VS+I ES+GSSSMA+VCG +LA MD GVPI  
Sbjct: 417 EIGHGNLAERAIKKVVPAENAFPYTMRVVSDILESNGSSSMASVCGGTLAAMDGGVPIKS 476

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           PVAGIAMGL+K+G+ + +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+   I+
Sbjct: 477 PVAGIAMGLIKEGERYAVLSDILGNEDHLGDMDFKVAGTIDGITACQMDIKIDGLDYAIV 536

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL+QA++GR+HIL  M + ++  R +L ++ PR+  + IP D I  VIG GG+ IR +
Sbjct: 537 EKALEQARQGRMHILKIMDEAITSPRQELAKYAPRLTTIQIPVDAIGAVIGKGGETIRAL 596

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAF 636
             +T  +++I DDGTV IAS S     AA + I+ +   PEV  +Y G+V +V  D GA 
Sbjct: 597 TSETNTEIDIADDGTVTIASVSSEGSAAAVDAIKLLVSDPEVGMVYNGKVKEVRDDLGAI 656

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL----DFDD--RGKIKLSMKVV 690
           V       GL+HIS+LS +R  K SD++K G    VKL+    D  D  R +  LSMKV+
Sbjct: 657 VEILPGVTGLLHISELSHQRGTKPSDILKVGQKTKVKLIRMAKDPKDPRRTRYSLSMKVL 716


>gi|317472798|ref|ZP_07932109.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
           3_2_56FAA]
 gi|316899717|gb|EFV21720.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
           3_2_56FAA]
          Length = 695

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/693 (42%), Positives = 436/693 (62%), Gaps = 11/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V    +E AGR L +E GR+A Q++GA    YG+TVVL+T       +DG DFFPL+V Y
Sbjct: 2   VKKFSMELAGRTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+L+RE+RP+EN IL  R+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 62  EEKQYAVGKIPGGFLKREARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP + +M+ ++ A  +S +PF+GP     V  I+G++++NP   + + S + L V+ T+
Sbjct: 122 CSPELTAMLGSAIATCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSEMSLTVASTR 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--L 240
           + V+M+E  AN++ ED++++AI   H   K +I  I  +   C KE    +  +  +   
Sbjct: 182 EKVIMIEAGANEVPEDIMIEAIFKAHEVNKEIIAFIDTIVAECGKEKHEYEHHEIDQEMY 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
           E+ +S +  E +  + F  EK VR + I  ++ K+   ++      ++ GE V  F   Q
Sbjct: 242 EDMVSFITPEAMEEAVFTDEKQVREENIRGIEDKLAERYADNEEWLSQIGEAVYTF---Q 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L  K R DGRD   +R ++A+V  L R HGS+LF RG TQ + V TLG+  +
Sbjct: 299 KKTVRKMILKDKKRPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSE 358

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D +   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +
Sbjct: 359 AQRLDGMDQDETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPTEEE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476
           FPY +R VSEI ES+GS+S  ++C SSL+LM AGVP+  PVAGI++GLV     DD++IL
Sbjct: 419 FPYAIRTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGDSDDDYLIL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGTD GITA+QMD+KI G+++ I+  A+ + K  R +IL++ M
Sbjct: 479 TDIQGLEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           + V+ E+R  +G++ P++    I P++I  VIG  GK I  I+++TG K++ID+ G V I
Sbjct: 539 NPVIGEARDHVGKYAPKISQYTIDPEKISEVIGKQGKTINAIIDETGVKIDIDESGRVDI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            S     I+ A  +I+SI +   V  IY+G+VV++M FGAFV     +DGL+HIS+L+ +
Sbjct: 599 LSEDQEMIDKAIGIIKSIVEPLNVGDIYEGEVVRIMQFGAFVQVSPNKDGLIHISKLAKD 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD V VK+L+ D  G+I L ++
Sbjct: 659 RVEKVEDVVNIGDRVAVKVLEIDKMGRINLKLE 691


>gi|187934276|ref|YP_001885477.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B
           str. Eklund 17B]
 gi|226702638|sp|B2TJ61|PNP_CLOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187722429|gb|ACD23650.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 704

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 299/697 (42%), Positives = 444/697 (63%), Gaps = 27/697 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           AG+ +K+E G+I   S+ A   +YG+TV+L  V      + G DFFPL+V Y+ER YAVG
Sbjct: 10  AGKEMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVG 69

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP+E  IL  R +DR++RPLF K Y+N+ QV+  V+  + ++ P ++++
Sbjct: 70  KIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAI 129

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
            AAS AL LS +PF  PV   QV  I+  +++NP   E ++ +L L V  T++ V+M+E 
Sbjct: 130 NAASMALCLSSIPFTIPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKERVMMIEA 189

Query: 191 EANQLSEDVVLDAIIFGHNECKPVI----EAISKLAK-------MCAKEPIVIDSKDFSK 239
             N++ ED+++DAI FG +EC+ +I    EA+SK  K           E +  D K+F+ 
Sbjct: 190 GGNEIPEDIMIDAIKFGFDECQKIINFQEEAVSKFGKEKDVPTLFTVDEEVEKDIKEFA- 248

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
                S MIKE    + +I +K  R   ID + +K+   F  ++     G+I  V  ++Q
Sbjct: 249 -----SDMIKE----AMYITDKDERNAAIDAVNQKVKEEFGEKYEDKF-GDIKEVLYNMQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR ++L  K R DGR  + VR +  ++GLL RTHG+ LF RG TQ + V TLG   D
Sbjct: 299 KKVVRHMLLKDKRRPDGRAFDEVRPLGCEIGLLPRTHGTGLFTRGLTQVMTVATLGAVGD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   Q   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +F
Sbjct: 359 IQILDGIDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+   D  +  +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLSEEQVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ R+ IL+++++
Sbjct: 479 DIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLKGFSFNVVENAIRDARKARMTILDKINE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S  R  +  + P+ E + I PD+IR+VIG GGKVI  I++ TG K++I +DG+V ++S
Sbjct: 539 CISSPREDVSLYAPKTETIQIDPDKIRSVIGAGGKVINKIIQDTGVKIDIKEDGSVFVSS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  ERV
Sbjct: 599 SDHAGVKEAIKIIEGLTKDVKAGEIYLGKVTKITTFGAFVEILPNKEGLVHISKLDKERV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQ 692
            K  DVV  GD + VK+ + D +G+I LS K  ++DQ
Sbjct: 659 NKVEDVVSVGDEILVKVTEIDSQGRINLSRKDVLLDQ 695


>gi|251781688|ref|YP_002995990.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390317|dbj|BAH80776.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 714

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A+V  L + HG  LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEVDFLPKVHGLGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ETIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|19746859|ref|NP_607995.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS8232]
 gi|81632438|sp|Q8NZC6|PNP_STRP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|19749100|gb|AAL98494.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes MGAS8232]
          Length = 710

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 436/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKSFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|150016092|ref|YP_001308346.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           beijerinckii NCIMB 8052]
 gi|187610256|sp|A6LSR0|PNP_CLOB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149902557|gb|ABR33390.1| Polyribonucleotide nucleotidyltransferase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 701

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/697 (42%), Positives = 450/697 (64%), Gaps = 17/697 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V T EI  AGR LK+E G++   S+ A   +YG+TV+L  V      ++G DFFPL+
Sbjct: 1   MNNVLTTEI--AGRELKVEFGKVGMLSNAATFTSYGDTVILTNVNASEQPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+ER YAVGKIPGG+++RE RP+E  IL  R +DR++RPLF K Y+N+ QV+  V+  
Sbjct: 59  VEYEERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVTTVVSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + ++ P ++++ AAS AL LS +P+  P    QV  I+G++V NP     + S L L V 
Sbjct: 119 EKDNLPEILAINAASLALCLSSIPYTIPAAAVQVGIIDGKFVTNPDTQGREKSILHLTVC 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIV--ID 233
            T++ V+M+E    ++ ED ++DAI +G +EC+ +I    EA++K  K    EP++  +D
Sbjct: 179 ATKERVMMIEAGGQEIPEDTMIDAIKYGFDECQKIIAFQEEAVAKFGKK-KDEPVLYAVD 237

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +    ++E  S MIKE    + +I EK  R   +D + +K+   F  +++    G+I  
Sbjct: 238 PELEKDVKEFASDMIKE----AMYIMEKDERNAAVDAVYEKVNEAFGEKYAD-KMGDIKE 292

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V   +Q KVVR ++L  K R DGR  + +R +  ++G+L RTHG+ LF RG TQ + V T
Sbjct: 293 VLYTMQKKVVRHMLLKDKRRPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVMTVAT 352

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  + Q +D +   Q   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++
Sbjct: 353 LGSISEIQILDGIDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLI 412

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-- 471
           P   +FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  
Sbjct: 413 PSEEEFPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS 472

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G ED  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ RL I
Sbjct: 473 EEAVLTDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLQGFSFNVVENAIRDARKARLTI 532

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           ++++++ +S  +  +  + P+ +IM+I PD+IR+VIG GGKVI  I++ TG K++I +DG
Sbjct: 533 IDKINECISTPKEDVSLYAPKTQIMSINPDKIRDVIGAGGKVINKIIQDTGVKIDIKEDG 592

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV ++S+    +  A ++I  +T   +  ++Y G+V K+  FGAFV    +++GLVHIS+
Sbjct: 593 TVFVSSTDHNGVNEAIKIIEGLTKEVKAGEVYLGKVTKITTFGAFVEILPSKEGLVHISK 652

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           L+ ERV K  DVV  GD + VK+ + D++G+I LS K
Sbjct: 653 LAKERVNKVEDVVSIGDEILVKVTEIDNQGRINLSRK 689


>gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
 gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
          Length = 732

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/693 (42%), Positives = 442/693 (63%), Gaps = 20/693 (2%)

Query: 11  WA--GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           W+  G+ + +E G IA+Q+ G+V+  Y +T +L+T       KD  DFFPLTV YQE+ Y
Sbjct: 8   WSFFGKTITVENGEIAKQAGGSVVVRYNDTTILSTATASSQAKD-TDFFPLTVLYQEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E+  L +R+IDR IRPLF++ ++NE QV+  V+ +D ++S  +
Sbjct: 67  AAGKIPGGFLRREGRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSNDPDASSEM 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLM 187
            S+  +S AL +S +PF GPV G QV  +NG++++NP ++E+ +G L L V+GT+ A+ M
Sbjct: 127 ASLFGSSLALCISDIPFNGPVAGVQVVRVNGEFLINPSVEENAKGDLHLTVAGTKQAINM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEE 242
           VE  A ++SE+ +L A+ FGH   + + E   ++   CAKE +      IDSK  + ++E
Sbjct: 187 VEAGAKEVSEETMLAALQFGHEAIQKLCEIQEEVIASCAKEKMEVTLYEIDSKIKAYIDE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV---SYFSSEHSSWNEGEIVSVFE--- 296
           + ++ I+E + +      K  R   ID L ++MV   S ++ E  +     +    E   
Sbjct: 247 KGAKRIREAVSIKA----KLERYATIDALIEEMVQGVSEWAYESEADQNKAMKQAREYGV 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+A  VR ++   K+R DGR  + +R + +QV LL R HGS+LF RG+TQ + V TLG 
Sbjct: 303 EIEANEVRRLISQDKIRPDGRALDELRSLDSQVDLLPRVHGSALFTRGETQVLSVTTLGP 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM  YNF P + GEV RMG+P RREIGHG L  RA+  VLP  
Sbjct: 363 LSDAQMMDDLGMEEEKRFMHQYNFPPFSVGEVGRMGSPGRREIGHGALGERALAQVLPSE 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R  +E+ ES+GSSS A++C  +++LM AGVPI   VAG+AMGL+  GD + +L
Sbjct: 423 EEFPYAIRTSAEVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSVL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+K+ GIS++I+  AL QA +GR+ IL+ M 
Sbjct: 483 TDIQGMEDHYGDMDFKVAGTREGITALQMDIKVTGISQDILREALAQAHKGRMQILDNME 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKI 595
             ++E R  + ++ P+++ + IP D+IR VIG GG++I  I+E     K++I+DDG+  I
Sbjct: 543 ACIAEPRPDVSKWAPKMDRLIIPVDKIRIVIGKGGEMIDKIIESCQDVKIDIEDDGSCVI 602

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                  I+ A+EMI ++    +V +IY+  V  V +  AFV+  G+ D L+H+SQLS E
Sbjct: 603 YHMDREMIDKAKEMIENLIKEAKVGEIYEACVTDVRESFAFVNLFGSVDALLHVSQLSWE 662

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV    D V+ GD + VK++  D+ GK+K+S K
Sbjct: 663 RVENIKDKVRVGDHIRVKVIQVDETGKVKVSAK 695


>gi|256827187|ref|YP_003151146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Cryptobacterium curtum DSM 15641]
 gi|256583330|gb|ACU94464.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Cryptobacterium curtum DSM 15641]
          Length = 742

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 308/692 (44%), Positives = 436/692 (63%), Gaps = 25/692 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  G+  +LETG +A+Q+ GAVL T GET  L T V  +  KD  DFFPLTV++ E+ 
Sbjct: 7   EFELYGKSYRLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKD-YDFFPLTVDFMEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG+IPGGYL+RE + ++   L +RMIDR IRP F   +K E  ++      D ++ P 
Sbjct: 66  YAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVADGQNPPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
            + +  ASAAL+  G PF+GP    ++  +   G++++NP   E + S L+L ++GT D 
Sbjct: 126 CICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTIAGTADY 185

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--- 241
           + MVE  AN++SE+ +L A+ FG        EAI   A  C  +   +D  D + LE   
Sbjct: 186 ISMVEAGANEVSEEDMLAAMNFGQ-------EAI---AAFCDAQQRFLDQLDCTPLEYAI 235

Query: 242 -------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVS 293
                   E     + ++  +    +K  R  +++ LK  +  S FS E  +    +I +
Sbjct: 236 HTADPRIAERVNAHEAEMAAALRDADKLSRIAKVEALKAAVRESDFSDEERAAWASDIAA 295

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++ + +R ++++   R+DGR ++ +R +  + G L R HGS LF RG TQA+ V T
Sbjct: 296 ALKALEKRAMRVMIIETGERVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCT 355

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  + Q +D++  ++   +M  YNF P  TGEV R+GAP RREIGHG LA RA+ PVL
Sbjct: 356 LGTLREGQRLDTIDPSEGKRYMHQYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVL 415

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY +R+VSEI ES+GSSSMA+ CGS+LALMDAGVPI+ PV+GIAMGL+K+GD+ 
Sbjct: 416 PSEDDFPYAIRVVSEILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDET 475

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +ILSDI G ED LG MDFKV GT  GITA+QMD K  G+S  I+  AL QAK GR  IL+
Sbjct: 476 VILSDIQGLEDFLGDMDFKVTGTARGITALQMDNKARGLSTEILGRALAQAKEGRAFILS 535

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M + +SE R +L EF PR+E + IP ++IR+VIG GGKVIRG+ ++TGA + +++DGTV
Sbjct: 536 AMLEQISEPRAELSEFAPRIETIKIPVEKIRDVIGTGGKVIRGLQDETGATIEVEEDGTV 595

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IA+      EAA++ I  I   PEV +IY G+VV + DFGAFV     +DGL+HIS+++
Sbjct: 596 HIAAVEGPAGEAAKQAILDIIKEPEVGEIYDGEVVGIKDFGAFVKLTAGKDGLLHISRMA 655

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             RV +  DV+  GD V V++++  D GKI L
Sbjct: 656 NGRVGQVEDVLNLGDAVKVEVIEVGDNGKISL 687


>gi|319744138|gb|EFV96511.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 713

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/690 (40%), Positives = 438/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 11  EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 69

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  +S  
Sbjct: 70  YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 129

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT++A+ 
Sbjct: 130 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 189

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++      +L+ E+ 
Sbjct: 190 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 249

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300
                 L+ +  + EK  R    + +K+ ++  + +   EH  ++    ++  + E ++ 
Sbjct: 250 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 309

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL    + 
Sbjct: 310 AEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP   +FP
Sbjct: 370 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 430 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++
Sbjct: 490 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 549

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 550 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 609

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R A  
Sbjct: 610 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 669

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +DV++ G+ V VK++  DD+G++  SMK +
Sbjct: 670 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 699


>gi|146319581|ref|YP_001199293.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           05ZYH33]
 gi|253752584|ref|YP_003025725.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
 gi|253754410|ref|YP_003027551.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
 gi|253756344|ref|YP_003029484.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
           BM407]
 gi|187611303|sp|A4VXQ4|PNP_STRSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611308|sp|A4W401|PNP_STRS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145690387|gb|ABP90893.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus suis 05ZYH33]
 gi|251816873|emb|CAZ52520.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
 gi|251818808|emb|CAZ56648.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
           BM407]
 gi|251820656|emb|CAR47416.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
 gi|292559196|gb|ADE32197.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis GZ1]
 gi|319758995|gb|ADV70937.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           JS14]
          Length = 739

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/690 (40%), Positives = 437/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E  +AG+ L +ETG++A+Q++GAV+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 7   ETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++S  
Sbjct: 66  YAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAP 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y+NG+ ++NP   + + SL +L V+G +DA+ 
Sbjct: 126 MAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLELTVAGNKDAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE  A +LSE+V+L+A++ GH   + +++  +++     KE   ++      +L+ E+ 
Sbjct: 186 MVESGAKELSEEVMLEALLKGHAAIQELLDFQNQIVAAVGKEKADVELLQVDPELQAEIV 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300
               +DL+ +  + EK  R    + +++ +++ +  +++   E      ++  + E ++ 
Sbjct: 246 AAYNDDLKKAVQVEEKLAREDATNAVRETVIATYEEKYAEHEEFDRIMRDVHEILELMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL    + 
Sbjct: 306 TEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGET 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L    +  F+ HYNF   + G   R GAP RREIGHG L  RA+  VLP    FP
Sbjct: 366 QIIDGLDDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSLEDFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++   +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + 
Sbjct: 486 GLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEATIP 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R  L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I S   
Sbjct: 546 EVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDR 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A IE  +E+I  +    +V+++++ +VV++  FGAFV+     D LVH+S+++  RV K 
Sbjct: 606 AAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKP 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D+V+ GD V VK++  DD+G+I  SMK +
Sbjct: 666 EDLVEVGDVVDVKVIKIDDKGRIDASMKAL 695


>gi|169342748|ref|ZP_02863788.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           C str. JGS1495]
 gi|169299254|gb|EDS81324.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           C str. JGS1495]
          Length = 702

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 IPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V    +  K+ EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239

Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + + ++E     +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q
Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNSAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  +
Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+F
Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  KD  +  +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ +
Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S
Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV
Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  DVV  GD + VK+ + D +G+I LS K
Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689


>gi|22536387|ref|NP_687238.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae 2603V/R]
 gi|81455352|sp|Q8E1Z8|PNP_STRA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22533214|gb|AAM99110.1|AE014201_8 polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           2603V/R]
          Length = 709

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/690 (40%), Positives = 439/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 7   EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  +S  
Sbjct: 66  YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT++A+ 
Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++      +L+ E+ 
Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300
                 L+ +  + EK  R    + +K+ ++  + +   EH  ++    ++  + E ++ 
Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL    + 
Sbjct: 306 AEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP+  +FP
Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPRLEEFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++
Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 546 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R A  
Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +DV++ G+ V VK++  DD+G++  SMK +
Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695


>gi|21911212|ref|NP_665480.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS315]
 gi|28896590|ref|NP_802940.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           SSI-1]
 gi|81758877|sp|Q8K5T4|PNP_STRP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21905424|gb|AAM80283.1| putative polynucleotide phosphorylase alpha chain [Streptococcus
           pyogenes MGAS315]
 gi|28811844|dbj|BAC64773.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes SSI-1]
          Length = 710

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 437/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTATVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|77407938|ref|ZP_00784689.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
 gi|77173485|gb|EAO76603.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
          Length = 709

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/690 (40%), Positives = 438/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 7   EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  +S  
Sbjct: 66  YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT++A+ 
Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++      +L+ E+ 
Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300
                 L+ +  + EK  R    + +K+ ++  + +   EH  ++    ++  + E ++ 
Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR  + +R + A +  L + HGS LF RG TQA+ V+TL    + 
Sbjct: 306 AEVRRLITEDKVRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP   +FP
Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++
Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESR QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 546 ESRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R A  
Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +DV++ G+ V VK++  DD+G++  SMK +
Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695


>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 701

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++ + V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSGTKDRVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244
           M+E  A ++SED++L+AI+    E K ++E I  + +   K  +     ++ K  + E++
Sbjct: 187 MIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPEDI 241

Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
            Q ++E      +    IP+K  R K++D+LK+++   F  E       E + + +D   
Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT
Sbjct: 297 SLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + + Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P  
Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+
Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M
Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +
Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+        A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   
Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    +VVK GD V VK++  D  G++ LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689


>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii L2-6]
          Length = 714

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/705 (42%), Positives = 431/705 (61%), Gaps = 36/705 (5%)

Query: 2   FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           FD   V E   AGRP K+E G++   S+ + L  YGET V+  VV     ++G DFFPL 
Sbjct: 12  FDNFKVYETTLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLN 71

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  
Sbjct: 72  VEYEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSL 131

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++ + S L L V+
Sbjct: 132 DPDCSPEIAGMIGASLVTAVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRRKSDLALTVA 191

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T D ++M+E  AN++ ED VL+AI   H E K +I  I+ +     K  I     DF  
Sbjct: 192 ATMDKIVMIEAGANEVDEDTVLNAIKAAHVEIKKIITFINGIVAERGKPKI-----DF-- 244

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHS 284
                 Q++  D+ V   I EKY     +DD K  M               +   + E+ 
Sbjct: 245 ------QVVGLDMDVFHAIKEKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYP 293

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E ++  V   +Q  VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG
Sbjct: 294 DLTEADLDLVSYKMQKYVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG 353

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
            TQ +   TLG  +D Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG L
Sbjct: 354 QTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGAL 413

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPYT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ 
Sbjct: 414 AERALLPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISC 473

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GL+ +GD ++ + DI G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ 
Sbjct: 474 GLITEGDRWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKC 533

Query: 525 KRGRLHILNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           ++GRL+IL+E+ K V++E R +L  + P++  M IP D+I++VIG GGKVI+ I      
Sbjct: 534 RKGRLYILDEIIKPVIAEPRRELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNC 593

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+++ +DG V +++    + + A   IR+I + PE+  IYKG+V ++M+FGAFV     +
Sbjct: 594 KIDVQEDGHVFVSAVDQEDAKRAIFTIRTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGK 653

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +GLVHIS+L T+RV +  DVV  GD + VK+ D D +G+I LS +
Sbjct: 654 EGLVHISKLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698


>gi|110799658|ref|YP_696367.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           ATCC 13124]
 gi|168211432|ref|ZP_02637057.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           B str. ATCC 3626]
 gi|123344675|sp|Q0TPS3|PNP_CLOP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110674305|gb|ABG83292.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           ATCC 13124]
 gi|170710551|gb|EDT22733.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           B str. ATCC 3626]
          Length = 702

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V    +  K+ EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239

Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + + ++E     +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q
Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  +
Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+F
Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAKF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  KD  +  +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ +
Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S
Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV
Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  DVV  GD + VK+ + D +G+I LS K
Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689


>gi|168207524|ref|ZP_02633529.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           E str. JGS1987]
 gi|168216967|ref|ZP_02642592.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           NCTC 8239]
 gi|170661139|gb|EDT13822.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           E str. JGS1987]
 gi|182380890|gb|EDT78369.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           NCTC 8239]
          Length = 702

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V    +  K+ EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239

Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + + ++E     +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q
Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  +
Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+F
Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  KD  +  +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ +
Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S
Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV
Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  DVV  GD + VK+ + D +G+I LS K
Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689


>gi|71904310|ref|YP_281113.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS6180]
 gi|94991237|ref|YP_599337.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10270]
 gi|122986981|sp|Q1JEW6|PNP_STRPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123747743|sp|Q48RA2|PNP_STRPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71803405|gb|AAX72758.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|94544745|gb|ABF34793.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 710

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 435/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|18310662|ref|NP_562596.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           str. 13]
 gi|168214487|ref|ZP_02640112.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|81766989|sp|Q8XJS4|PNP_CLOPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|18145343|dbj|BAB81386.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           str. 13]
 gi|170714049|gb|EDT26231.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           CPE str. F4969]
          Length = 702

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/691 (42%), Positives = 444/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V    +  K+ EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239

Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + + ++E     +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q
Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  +
Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+F
Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  KD  +  +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ +
Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S
Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV
Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  DVV  GD + VK+ + D +G+I LS K
Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689


>gi|146321779|ref|YP_001201490.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           98HAH33]
 gi|145692585|gb|ABP93090.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus suis 98HAH33]
          Length = 791

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/690 (40%), Positives = 437/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E  +AG+ L +ETG++A+Q++GAV+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 59  ETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKM 117

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++S  
Sbjct: 118 YAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAP 177

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y+NG+ ++NP   + + SL +L V+G +DA+ 
Sbjct: 178 MAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLELTVAGNKDAIN 237

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE  A +LSE+V+L+A++ GH   + +++  +++     KE   ++      +L+ E+ 
Sbjct: 238 MVESGAKELSEEVMLEALLKGHAAIQELLDFQNQIVAAVGKEKADVELLQVDPELQAEIV 297

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300
               +DL+ +  + EK  R    + +++ +++ +  +++   E      ++  + E ++ 
Sbjct: 298 AAYNDDLKKAVQVEEKLAREDATNAVRETVIATYEEKYAEHEEFDRIMRDVHEILELMEH 357

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL    + 
Sbjct: 358 TEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGET 417

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L    +  F+ HYNF   + G   R GAP RREIGHG L  RA+  VLP    FP
Sbjct: 418 QIIDGLDDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSLEDFP 477

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++   +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 478 YAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 537

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + 
Sbjct: 538 GLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEATIP 597

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R  L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I S   
Sbjct: 598 EVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDR 657

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A IE  +E+I  +    +V+++++ +VV++  FGAFV+     D LVH+S+++  RV K 
Sbjct: 658 AAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKP 717

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D+V+ GD V VK++  DD+G+I  SMK +
Sbjct: 718 EDLVEVGDVVDVKVIKIDDKGRIDASMKAL 747


>gi|329943105|ref|ZP_08291879.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
 gi|332287687|ref|YP_004422588.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
 gi|313848261|emb|CBY17262.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           RD1]
 gi|325507208|gb|ADZ18846.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
 gi|328814652|gb|EGF84642.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
 gi|328914940|gb|AEB55773.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
          Length = 694

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/698 (42%), Positives = 431/698 (61%), Gaps = 22/698 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V +E  G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V
Sbjct: 3   FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ANLEEAVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  ++GK  GG+++RE RPTE EIL SR+IDRS+RP        + Q++  V  +D
Sbjct: 61  DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
             + P  +++   SAAL +S +P    V G +V ++N ++V+NP + + D   ++L ++G
Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T++A+LM+E   +  +E+ V++AI FGH     + +A+    K   KE    ++     L
Sbjct: 181 TENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKQIGKEK---NTSQIVSL 237

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGE 290
            EE+         V+  +  K+V   +I +          L+ ++V     E+  + E  
Sbjct: 238 PEEVQSA------VNALVEGKFVDLLKIKEKKAFEAASKQLENEVVEQLQEENEVFTEFN 291

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I   F+  ++  +R+++ ++ +R DGR   T+R IS +   L RTHGS LF RG+TQ + 
Sbjct: 292 IKIAFKQAKSNFMRSLIREQGIRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMA 351

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TLG+    Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+ 
Sbjct: 352 VCTLGSEAMAQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALS 411

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
             LP   +FPYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D 
Sbjct: 412 HTLPDPVKFPYTIRIESSITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDD 471

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D   ILSDISG EDHLG MDFKVAG   GITA QMD+K+ GI+  IM  AL QAK GR  
Sbjct: 472 DHVTILSDISGLEDHLGDMDFKVAGNTEGITAFQMDIKVEGITPAIMRAALAQAKDGRQD 531

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M + L+  +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D 
Sbjct: 532 ILETMKQALAAPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDS 591

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V I++SS   IE A+ +I  +    EV KIY+G+V  V+ FGAFV     ++GL HIS
Sbjct: 592 GLVSISASSPQAIEKAKSIIEGLVGEVEVGKIYEGRVTSVVPFGAFVEILPGKEGLCHIS 651

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + S +R+    D VK+GDT+ VKLL  +++G+ KLS K
Sbjct: 652 EFSKQRIDNVGDFVKQGDTLTVKLLSINEKGQYKLSHK 689


>gi|322411051|gb|EFY01959.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 714

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/701 (40%), Positives = 436/701 (62%), Gaps = 10/701 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVISTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIIFQEQIVAAVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKSREAATEAVKE-MVKAEYEERYAEDENLAIIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ +IG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVIIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIADLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
               SDV++ G+ V VK++  D++G++  SMK +     KP
Sbjct: 662 TTNVSDVLEVGEEVDVKVIKIDEKGRVDASMKALIPRPPKP 702


>gi|312277503|gb|ADQ62160.1| Polyribonucleotide nucleotidyltransferase [Streptococcus
           thermophilus ND03]
          Length = 741

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/693 (40%), Positives = 432/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+ + GRPL +E G++A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY+
Sbjct: 4   QTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKIATA-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   D++   LDL V+GT++
Sbjct: 123 SVPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++     + L+ 
Sbjct: 183 AINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLKA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+  +  + L  +  + EK  R      +K+++++ +    +  ++ E     +V + E 
Sbjct: 243 EIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDDDKETILRDVVEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + K+R DGR  + +R + A++  L   HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+++TG  ++ID++G V+I S
Sbjct: 543 AIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIDETGVTIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ +  
Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKHT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DVVK GD V VK++  D++G++  S+K +
Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695


>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 701

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/693 (42%), Positives = 442/693 (63%), Gaps = 22/693 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV+Y+ER 
Sbjct: 7   KMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERL 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D ++ P 
Sbjct: 67  YSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++M+ +S AL +S +PFEGP     V Y++ + V+NP   E + S L L VSGT+D V+
Sbjct: 127 VLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSGTKDRVM 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEM 244
           M+E  A ++SED++L+AI+    E K ++E I  + +   K  +     ++ K  + E++
Sbjct: 187 MIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKM-----EYQKRIVPEDI 241

Query: 245 SQMIKEDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
            Q ++E      +    IP+K  R K++D+LK+++   F  E       E + + +D   
Sbjct: 242 KQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETE-----ETLLLVDDALY 296

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR ++ ++  R DGR  + +R + A++G+L RTHGS+LF RG TQ + V TLGT
Sbjct: 297 SLEKEIVRKMIAEEGKRPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + + Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P  
Sbjct: 357 KGEMQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
            +FPYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+
Sbjct: 417 DEFPYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFIL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M
Sbjct: 477 LTDIQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +
Sbjct: 537 QTVIDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFV 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+        A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   
Sbjct: 597 AAPDDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDER 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    +VVK GD V VK++  D  G++ LS K
Sbjct: 657 RLKSVDEVVKVGDLVLVKVIGIDKLGRLSLSRK 689


>gi|76788173|ref|YP_328934.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae A909]
 gi|76799250|ref|ZP_00781422.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77405356|ref|ZP_00782451.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
 gi|77410940|ref|ZP_00787296.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           CJB111]
 gi|123602514|sp|Q3K3G9|PNP_STRA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76563230|gb|ABA45814.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           A909]
 gi|76585403|gb|EAO61989.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77162995|gb|EAO73950.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           CJB111]
 gi|77176034|gb|EAO78808.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
          Length = 709

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/690 (40%), Positives = 438/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 7   EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  +S  
Sbjct: 66  YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT++A+ 
Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++      +L+ E+ 
Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300
                 L+ +  + EK  R    + +K+ ++  + +   EH  ++    ++  + E ++ 
Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL    + 
Sbjct: 306 AEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP   +FP
Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++
Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 546 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R A  
Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +DV++ G+ V VK++  DD+G++  SMK +
Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695


>gi|182626381|ref|ZP_02954135.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           D str. JGS1721]
 gi|177908332|gb|EDT70880.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           D str. JGS1721]
          Length = 702

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/691 (42%), Positives = 443/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V    +  K+ EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239

Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + + ++E     +  S  I  +  R   +D++K K+   F  ++   N  +I     D+Q
Sbjct: 240 IEEAVREFAFDMISESMHITNRDERNSAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  +
Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISE 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+F
Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  KD  +  +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ +
Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S
Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV
Sbjct: 599 AESEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  DVV  GD + VK+ + D +G+I LS K
Sbjct: 659 EKVEDVVSVGDEILVKVTEIDSQGRINLSRK 689


>gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 718

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/695 (42%), Positives = 439/695 (63%), Gaps = 20/695 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNY 63
           H   +E  GR L +ETG+ A+Q  G+V   YG+TVV+AT    D+ ++   DF PLTV +
Sbjct: 12  HRYSLEVGGRTLSIETGKYAKQVSGSVWVRYGDTVVMATAQASDKPIE--ADFLPLTVEF 69

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPG ++RRE RP E  IL +R+ DR IRPLF K +++E QVI+ V+  D E
Sbjct: 70  EERHYAVGKIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQE 129

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQD 183
           ++P ++  +AASAAL LS +P+ GP+   +V   +G+ VLNP +  ++  LDL V+G++D
Sbjct: 130 NTPDILGPIAASAALTLSDIPWNGPIASVRVGLQDGRLVLNP-VAAEESDLDLVVAGSKD 188

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           A++MVE  A ++ E+ ++ A+ F H   +P+IE   ++     K    + + +  KL +E
Sbjct: 189 AIIMVEAGAREIPEEQLVQALEFAHRAMQPIIELQEQMRAELGKPKFEVAAPE--KLGDE 246

Query: 244 MSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGE------- 290
            ++      ++  L        K  R   ++  ++ +V+   +S  S+ +E E       
Sbjct: 247 ETEAFRRLALERGLSNVLLTAAKGERSAALEAFRETIVAEVLASTDSALDEVEAQRRRRL 306

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
               F+++  + +R ++L++  R DGR +  VR I  +  +L R HGS++F RG+TQ + 
Sbjct: 307 YQQAFDEVVKRELRRLILEENRRADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLG 366

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           VVTLGT  D Q VD L     + F++HYNF P +TGEV R+   SRRE+GHG LA+RA+ 
Sbjct: 367 VVTLGTGRDAQLVDDLGLDTEDPFLVHYNFPPYSTGEVKRLRGVSRREVGHGNLAKRALR 426

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            VLP   +FPYT+R+V ++ ES+GSSSMAT C   LALMDAGVPI KPVAG+AMGLV +G
Sbjct: 427 AVLPSQEEFPYTIRVVGDVLESNGSSSMATTCAGCLALMDAGVPIKKPVAGVAMGLVSEG 486

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D  ++L+DI G ED LG MDFKV GT  G+TA+QMD+KI G+S   +  AL QA+  RL 
Sbjct: 487 DRHVVLTDILGLEDALGDMDFKVTGTKDGVTALQMDIKISGLSSETLRQALMQAREARLF 546

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M++VL E R +L    PR+  + +P ++I  +IG GGK +R + E+ G +V+I+ D
Sbjct: 547 ILDKMTEVLPEPRRELKPQVPRILTLKVPVEKIGAIIGPGGKNVRAL-EELGVEVDIEQD 605

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV++ S++    E AR  I   T    + +IY+G V ++ +FGAFV      DGL+HIS
Sbjct: 606 GTVRLFSANAIAAEEARSRILGQTQEARIGEIYEGTVSRITNFGAFVTLFPGTDGLLHIS 665

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           Q++  RV +  DV+K GD + VK+   D++G++ L
Sbjct: 666 QIAPGRVERVEDVLKLGDKIRVKVNKIDEKGRVDL 700


>gi|303239217|ref|ZP_07325746.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
           cellulolyticus CD2]
 gi|302593262|gb|EFL62981.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
           cellulolyticus CD2]
          Length = 703

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 296/697 (42%), Positives = 439/697 (62%), Gaps = 21/697 (3%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           ++  +E AGR L +ETG++A+ S+G+V+  YG+TVVL+        ++G DFFPL+V+Y+
Sbjct: 3   NSFSMELAGRTLVIETGKLAQLSNGSVMVRYGDTVVLSNATASAKPREGIDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL SR+IDR +RPLF K  +N+  ++  VM  D ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILTSRVIDRPLRPLFPKDLRNDVALVNTVMSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           SP V +++ AS AL +S +PF GPV G  +  ++G+ V+NP   + + S + + ++ T++
Sbjct: 123 SPEVAALLGASMALSISDIPFNGPVGGVILGLVDGKVVINPDAKQREKSQMYVTLAATRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            ++M+E  AN++ +DV+LDAI  GH E + + + I  + K   K      S   +++  E
Sbjct: 183 KIVMIEAGANEVPDDVMLDAIRQGHQEIRKICDFIDSVVKEIGKPKFEYKS---AEVPAE 239

Query: 244 MSQMIKE----DLRVSCFIPEKYVR----CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +   +KE     +R +    +K VR     K  +D K  +   F    S  +E       
Sbjct: 240 IFMAVKEFGYARMREAVLAVDKQVRDENIAKLTEDTKAHLAETFPEMESIIDEA-----L 294

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             ++ KVVR  ++ +  R+DGR  + +R +SA VGLL R HGS LF RG TQ + +VTLG
Sbjct: 295 YKLEKKVVREYIMKEGKRVDGRRLDEIRPLSADVGLLPRVHGSGLFQRGQTQVLTIVTLG 354

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D +   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P 
Sbjct: 355 ALGDVQVLDGIELEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERALEPVIPS 414

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--- 472
             +FPYT+R+VSE+  S+GS+S  +VCGS+LALMDAGVPI KPVAGI+ GLV D D+   
Sbjct: 415 QEEFPYTMRLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDEDEPGR 474

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F+   DI G ED  G MDFKVAGT  GITA+Q+D+K+ G++E I+  A +  ++GRL I+
Sbjct: 475 FVTFMDIQGIEDFFGDMDFKVAGTKDGITAIQVDIKVDGLTEEIVEQAFELTRKGRLQII 534

Query: 533 NE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           ++ + K +   R ++ ++ P++   AI PD+IR+VIG GGK+I  I+  TG K++I+DDG
Sbjct: 535 DDVILKAIPAPRKEMSKYAPKIITTAINPDKIRDVIGPGGKMINKIIADTGVKIDIEDDG 594

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I+SS+    + A  MI  I    E  +IY G+V++V  FGAFV F   ++GLVHIS+
Sbjct: 595 KVFISSSNSQAAQRALMMIEGIAKDVEPGQIYMGKVMRVTTFGAFVEFLPGKEGLVHISK 654

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           L  +RV K  DVV  GD + VK+LD D +G+I LS K
Sbjct: 655 LDKKRVEKVEDVVNIGDEILVKVLDVDKQGRINLSRK 691


>gi|290579654|ref|YP_003484046.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           NN2025]
 gi|254996553|dbj|BAH87154.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           NN2025]
          Length = 730

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/665 (42%), Positives = 424/665 (63%), Gaps = 16/665 (2%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +AG+ L +E G++A+Q++GA L  YG++ VL+  V  + +  G DFFPL +NY+E+ YA 
Sbjct: 10  FAGKKLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTG-DFFPLQINYEEKRYAA 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++S  + +
Sbjct: 69  GKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMAA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVE 189
           M  +S AL +S +PF GP+ G QV Y++GQYV+NP  +E + SL +L V+GT++A+ MVE
Sbjct: 129 MFGSSLALSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLELTVAGTKEAINMVE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEEEM 244
             A +LSED++L+A++ GH   + +I    E I+ + K  A+ E + +D+     L+ E+
Sbjct: 189 SGAKELSEDIMLEALLKGHEAVRELIAFQEEIIAAVGKEKAEVELLQVDAD----LQAEI 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFEDIQ 299
                 DL+ +  I EK  R    + +K+ + + +   ++   E +     +  + E ++
Sbjct: 245 VGKYNADLQKAVQIEEKKAREIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILEQME 304

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL    D
Sbjct: 305 HAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGD 364

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP    F
Sbjct: 365 TQIVDGLDEEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEAF 424

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI
Sbjct: 425 PYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDI 484

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + KV+
Sbjct: 485 QGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIEKVI 544

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              RL+L    P+++ + +  D+I+ VIG GG+ I  I+E+TG K++ID+DG + I SS 
Sbjct: 545 PAPRLELAPTAPKIDTIKVDVDKIKIVIGKGGETIDKIIEETGVKIDIDEDGNIAIYSSD 604

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I   +E+I S+    +V +IY+ +VV++  FGAFV+     D L+HIS+++  R  K
Sbjct: 605 QEAINRTKEIIASLVREAKVGEIYEAEVVRIEKFGAFVNLFDKTDALIHISEIAWTRTNK 664

Query: 660 TSDVV 664
             DV+
Sbjct: 665 VEDVL 669


>gi|223933942|ref|ZP_03625902.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
           89/1591]
 gi|302024508|ref|ZP_07249719.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           05HAS68]
 gi|330833543|ref|YP_004402368.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
 gi|223897389|gb|EEF63790.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
           89/1591]
 gi|329307766|gb|AEB82182.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
          Length = 739

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/690 (40%), Positives = 436/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E  +AG+ L +ETG++A+Q++GAV+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 7   ETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++S  
Sbjct: 66  YAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAP 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y+NG+ ++NP +   ++  LDL V+G +DA+ 
Sbjct: 126 MAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDKAQMEESLLDLTVAGNKDAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE  A +LSED++L+A++ GH   + +++  +++     KE   ++      +L+ E+ 
Sbjct: 186 MVESGAKELSEDIMLEALLKGHEAIQELLDFQNQIVAAVGKEKADVELLQVDPELQAEIV 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300
               +DL+ +  + EK  R    + +++ +++ +  +++   E      ++  + E ++ 
Sbjct: 246 AAYNDDLKKAVQVEEKLAREDATNAVRETVIAAYEEKYAEHEEFDRIMRDVHEILELMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL    + 
Sbjct: 306 AEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGET 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L    +  F+ HYNF   + G   R GAP RREIGHG L  RA+  VLP    FP
Sbjct: 366 QIIDGLGDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSLEDFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++   +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + 
Sbjct: 486 GLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIEATIP 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R  L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I S   
Sbjct: 546 EVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDR 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             IE  +E+I  +    +V+++++ +VV++  FGAFV+     D LVH+S+++  RV K 
Sbjct: 606 DAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKP 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D+V+ GD V VK++  DD+G+I  SMK +
Sbjct: 666 EDLVEIGDIVDVKVIKIDDKGRIDASMKAL 695


>gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 722

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/689 (43%), Positives = 434/689 (62%), Gaps = 10/689 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   +E  GR L +ETG+ A+Q  G+V   YG+TVV+AT        +  DF PLTV ++
Sbjct: 19  HRYAVEIGGRELVIETGKYAKQVSGSVWVRYGDTVVMATAQASPEPIEA-DFLPLTVEFE 77

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +R+ DR IRPLF K +++E QVI+ V+  D  +
Sbjct: 78  ERHYAVGKIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQAN 137

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+   AASAALMLS +P+EGP+   +V  I+GQ+VLNP L + +   LDL V+G++D
Sbjct: 138 PPDVLGPTAASAALMLSDIPWEGPIAAVRVGRIDGQFVLNPTLQQLEHSDLDLVVAGSKD 197

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSKDFSKL 240
           A++MVE  AN++ EDV+++A+ + H   +P++    ++     K   E    ++     L
Sbjct: 198 AIIMVEAGANEVPEDVLVEALEYAHQAIQPIVALQERMRAELGKPKFEWTPPETLPEEAL 257

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE---IVSVFED 297
           E   ++  +  L        K  R + ++   + +++ F  E     E +     + F++
Sbjct: 258 EALYARARERGLAEVLTTASKRERSEALERFAEALIAEFVPEEDEQAEAKRKLYAAGFDE 317

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  + +R ++L++  R DGR    +RDI  +V +L R HGS++F RG+TQ +  VTLGT 
Sbjct: 318 VVKRELRRLVLEEGRRADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTG 377

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D L   + + F++HYNF P +TGEV R+   SRRE+GHG LA+RA+ PVLP   
Sbjct: 378 RDEQIIDDLGIDESDPFLVHYNFPPYSTGEVKRLRGTSRREVGHGNLAKRALRPVLPDKD 437

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIIL 476
            FPYT+RIV ++ ES+GSSSMAT C   LALMDAGVPI KPVAGIAMGLV  +  + +IL
Sbjct: 438 AFPYTIRIVGDVLESNGSSSMATTCAGCLALMDAGVPIKKPVAGIAMGLVMPETGEPVIL 497

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+KI G++  IM  AL+QA++ RL IL++M 
Sbjct: 498 TDILGMEDALGDMDFKVTGTRDGVTALQMDIKIKGLTPEIMRRALEQARQARLAILDQME 557

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            VL   R +L    PR+  + +P D+I  VIG GGK +R + E+ G  V+I+ DGTV+I 
Sbjct: 558 AVLPAPRPELKPHAPRILTVKVPVDKIGVVIGPGGKNVRAL-EELGVDVDIEPDGTVRIY 616

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+  A  E A+  +  +T   +V +IY+G V ++ +FGAF+      +GL+HISQ++  R
Sbjct: 617 SADSAAAEEAKRRVEEVTREAKVGEIYEGTVTRITNFGAFITLFPGTEGLLHISQIAPGR 676

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           + +  D +K GD + VK+   D+ G+I L
Sbjct: 677 IQRVEDHLKLGDKIKVKVNRIDEMGRIDL 705


>gi|139474436|ref|YP_001129152.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           str. Manfredo]
 gi|187611301|sp|A2RGH2|PNP_STRPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134272683|emb|CAM30954.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           str. Manfredo]
          Length = 710

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/693 (39%), Positives = 436/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  V +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPVAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-----YFSSEHSSWNEGEIVSVFED 297
           ++       L+ +  + EK  R    + +K+ + +     Y   E+ +    ++  + E 
Sbjct: 243 DIVAKYNVQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYVEDENLATIMRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP   
Sbjct: 363 GETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E   +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I S
Sbjct: 543 TIAEPHPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIYS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R 
Sbjct: 603 SDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTRT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 663 ANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|269792330|ref|YP_003317234.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099965|gb|ACZ18952.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 752

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/689 (43%), Positives = 441/689 (64%), Gaps = 11/689 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V++E  GR L  ETGR+A+Q++GAV A+YGET VL T V     ++G DFFPL V+Y+ER
Sbjct: 5   VQLELGGRVLSFETGRMAKQANGAVYASYGETAVLVTSVMSEKPREGLDFFPLLVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            Y+ GKIPGG+++RE RP+E  IL  RM+DRSIR LF +  +N+  V+  V+  D  + P
Sbjct: 65  FYSAGKIPGGFIKREGRPSETAILSGRMVDRSIRSLFPEHMRNDVHVVATVLSVDQHNPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
           +V+++ AASAAL +S +P++GP+   ++  I+GQ ++NP   +  + +LDL V+G    +
Sbjct: 125 NVLAINAASAALAISDIPWDGPIGAVRIGCIDGQLLVNPTEPQMAESTLDLLVAGHDGGI 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEM 244
            MVE  AN++SED+++DA+   H E + ++  I  L A++  K+  +       +++  +
Sbjct: 185 TMVEAGANEVSEDLLVDAMELAHQEIRRIVAFIRDLQAQVGLKKVEIAPPARIDEIDAWI 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
              +KE++  +  I  K  R   +  + K+ V  F   H     G + SV E+   K +R
Sbjct: 245 EAELKEEIYKAVQIHHKVERKDALSAITKRAVERFEESHPGCA-GYVASVVEEWVKKGLR 303

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQYV 363
            ++LD+  R DGR  + +R I+ +VG+L + HGS+LF RG+TQA+ V TLG   ED+Q +
Sbjct: 304 RLLLDEGRRADGRAMDQLRPITCEVGVLPKVHGSALFTRGETQALAVTTLGMMGEDDQIL 363

Query: 364 DSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           D L        F++HYNF P + GEV  M  P RREIGHG LA RA+ P+LP   QFPY 
Sbjct: 364 DGLKIDEPAKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPMLPSEDQFPYV 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VS+I ES+GSSSMA+VCG SL++MDAGVPI K VAG+AMGLV DG    IL+DI G 
Sbjct: 424 VRVVSDILESNGSSSMASVCGGSLSMMDAGVPIKKAVAGVAMGLVTDGSRVCILTDIQGL 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  G+TA+QMD K GGI+  I+  AL QA+ GR+ IL+ M   +   
Sbjct: 484 EDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILKRALDQARDGRMRILDIMDGAIRSP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R Q+    PR+  + I PD+IR+VIG GGK IR I+ QTGAKV++ DDG V +A+ +   
Sbjct: 544 RDQISPNAPRIMTITIDPDKIRDVIGPGGKTIRSIIAQTGAKVDVQDDGRVCVAAQTE-- 601

Query: 603 IEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            EAA + I+ I+D+    +  +I+ G++ +++ FG FV     ++GL+H+S++S+  + K
Sbjct: 602 -EAASQAIKIISDLTREVQAGEIFVGRITRMLGFGYFVEVLPGKEGLLHVSEISSHHIPK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             D    GD V V + + DD  +I LS +
Sbjct: 661 IEDAFSIGDEVLVVVREIDDMNRINLSRR 689


>gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
 gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
          Length = 706

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/692 (41%), Positives = 437/692 (63%), Gaps = 5/692 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + V EIE+ G+ +  ETG++   S+ +VL  +GETVVL  V      ++G DFFPL
Sbjct: 1   MFENYKVYEIEYGGKKMTFETGKMCCLSNASVLVRWGETVVLVNVTASAKPREGIDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVGKIPG +++RESRP++  IL SR++DR IRPLF K  +N+  V++ VM 
Sbjct: 61  SVDFEEKLYAVGKIPGSFIKRESRPSDKAILSSRLVDRPIRPLFPKDMRNDCSVVMTVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D +  P +  MV  S AL +S +P+ GP+ G  V  ++G+ +++P   +   S L+L V
Sbjct: 121 VDPDCLPEIAGMVGTSFALSISDIPWNGPIAGINVGLVDGEIIVSPDAAQRAKSDLNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +  +D + M+E  AN+++ DV+LDAII GH E K ++  I  +     K      S +  
Sbjct: 181 AANEDVICMIEAGANEVANDVMLDAIIKGHEEIKRMVAFIKNVQAEIGKPKFSFQSMEVP 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +D++ +     K VR +++  + +++   F  E  + N   I      
Sbjct: 241 HELFDAIRDFAIDDVKAALDTDNKNVRDERLAPVVERIHEKFDDEEKT-NAAVIDEAIYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS +F RG TQ + V TLGT 
Sbjct: 300 LQKFIVRRWLLDEQKRVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTI 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D +   ++  ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   
Sbjct: 360 SEAQKLDGIDDQEQKRYIHHYNFPSYSVGETRPSRGPGRREIGHGALAERALEPVIPPVE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+  S+GS+S  ++CGS+LALMDAGVPI +PVAGI+ GL+ +GD ++ + 
Sbjct: 420 EFPYTIRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKRPVAGISCGLITEGDRWMTMV 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT+ GITA+QMD+KI G++ +I+  A ++  + R++ILN+ M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTEKGITAIQMDLKIVGLTYDIIREAFEKTYKARMYILNDIML 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+   R +L ++ P+++ + I PD+IR VIG GGKVI+ I      K++I+DDG V +A
Sbjct: 540 PVIPAPREELSKYAPKMKSIKIHPDKIREVIGSGGKVIQKICADCNVKIDINDDGDVFVA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    +  A  +I +I + PE+  IYKG+V ++M+FGAFV     ++G+VHIS+L   R
Sbjct: 600 GTDSDGVRRALSIIETIVNDPEIGAIYKGRVTRLMNFGAFVELAPGKEGMVHISKLDMGR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K  DVV  GD V VK+ D D +G+I LS +
Sbjct: 660 VEKVEDVVAVGDEVIVKVTDIDQQGRINLSRR 691


>gi|56808519|ref|ZP_00366256.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus pyogenes M49 591]
 gi|209560089|ref|YP_002286561.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           NZ131]
 gi|226704825|sp|B5XIK4|PNP_STRPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209541290|gb|ACI61866.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           NZ131]
          Length = 710

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 436/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGINYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|94989291|ref|YP_597392.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS9429]
 gi|122987076|sp|Q1JJX5|PNP_STRPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94542799|gb|ABF32848.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS9429]
          Length = 710

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/694 (40%), Positives = 435/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|15675748|ref|NP_269922.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           M1 GAS]
 gi|71911473|ref|YP_283023.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS5005]
 gi|81533345|sp|Q99XZ5|PNP_STRP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13622969|gb|AAK34643.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes M1 GAS]
 gi|71854255|gb|AAZ52278.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 710

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/694 (40%), Positives = 435/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++       L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDVDLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|110803188|ref|YP_698967.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           SM101]
 gi|123146059|sp|Q0SSE0|PNP_CLOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110683689|gb|ABG87059.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           SM101]
          Length = 702

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/691 (42%), Positives = 443/691 (64%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V    +  K+ EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKV---PELHKVPEE 239

Query: 244 MSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + + ++E     +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q
Sbjct: 240 IEEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG   +
Sbjct: 299 KEVVRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAISE 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+F
Sbjct: 359 IQILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  KD  +  +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ +
Sbjct: 479 DIQGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S
Sbjct: 539 CIPAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSS 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV
Sbjct: 599 AESEGVKEAVKIIEGLTKEVKSGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  D+V  GD + VK+ + D +G+I LS K
Sbjct: 659 EKVEDIVSVGDEILVKVTEIDSQGRINLSRK 689


>gi|116627040|ref|YP_819659.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus LMD-9]
 gi|122268357|sp|Q03MV9|PNP_STRTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116100317|gb|ABJ65463.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus thermophilus LMD-9]
          Length = 741

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/693 (40%), Positives = 431/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+ + GRPL +E G++A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY+
Sbjct: 4   QTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATA-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   D++   LDL V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++     + L+ 
Sbjct: 183 AINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVNADLKA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+  +  + L  +  + EK  R      +K+++++ +    +   + E     +V + E 
Sbjct: 243 EIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDEDKETILRDVVEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L    +  F+ HYNF   + G+  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGKTGRYGAPGRREIGHGVLGERALAQVLPSVE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I S
Sbjct: 543 AIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ +  
Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKHT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DVVK GD V VK++  D++G++  S+K +
Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695


>gi|25010273|ref|NP_734668.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae NEM316]
 gi|77413798|ref|ZP_00789978.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
 gi|81457782|sp|Q8E7F6|PNP_STRA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23094625|emb|CAD45843.1| polynucleotide phosphorylase, alpha chain [Streptococcus agalactiae
           NEM316]
 gi|77160160|gb|EAO71291.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
          Length = 709

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/690 (40%), Positives = 437/690 (63%), Gaps = 8/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY+E+ 
Sbjct: 7   EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNYEEKM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  +S  
Sbjct: 66  YAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAP 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT++A+ 
Sbjct: 126 MAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAIN 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++      +L+ E+ 
Sbjct: 186 MVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEII 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQA 300
                 L+ +  + EK  R    + +K+ ++  + +   EH  ++    ++  + E ++ 
Sbjct: 246 ATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEH 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR  + +R + A +  L + HGS LF RG TQA+ V+TL    + 
Sbjct: 306 AEVRRLITEDKVRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEA 365

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP   +FP
Sbjct: 366 QIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFP 425

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI 
Sbjct: 426 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQ 485

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++
Sbjct: 486 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIA 545

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 546 EPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQ 605

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R A  
Sbjct: 606 AAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANV 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +DV++ G+ V VK++  DD+G++  SMK +
Sbjct: 666 ADVLEIGEEVDVKVIKIDDKGRVDASMKAL 695


>gi|57234211|ref|YP_181693.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides
           ethenogenes 195]
 gi|123759700|sp|Q3Z7V6|PNP_DEHE1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57224659|gb|AAW39716.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides
           ethenogenes 195]
          Length = 720

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/701 (41%), Positives = 450/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G++AR +D AV   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++NE Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  ++V Y NG++VLNP   + +Q  +DL V 
Sbjct: 121 DKENDADIWGVVGASTVLTMSQIPYEGPVGASRVGYTNGEFVLNPTFAQLEQSQMDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T+ AV+M+E  + ++ ED+++ AI F H   + +I+   ++     KE + +   +   
Sbjct: 181 STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  ++  +K  +  +    +K +R   ++ L+ ++V   +    ++ EG+I++ ++  
Sbjct: 241 EVKAAVAAFVKGRVNEALSHQDKTLRENAVEALQSELVEALAE---TYAEGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ G+L R HGS+LF RGDTQ + + TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP   +
Sbjct: 358 EAQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  + D +  ++
Sbjct: 418 FPYTIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +++  A+ QAK  R  IL  M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  ++I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A ++I  +T   E   +Y G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 TDEASAQKAIKIIEDLTKDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  DVVK GD + VK+ + D +G+I LS +V+      PI
Sbjct: 658 EKVEDVVKVGDEITVKVTEIDSQGRINLSRRVILNPNAVPI 698


>gi|283781766|ref|YP_003372521.1| polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
           6068]
 gi|283440219|gb|ADB18661.1| Polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
           6068]
          Length = 744

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/702 (42%), Positives = 443/702 (63%), Gaps = 19/702 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE +        ETG +A+Q+  AVL  YG+TVV+         + G DFFPLT +Y+ER
Sbjct: 5   VEKQIGNHTFSFETGYLAKQAAAAVLCQYGDTVVMNAAASGPG-RPGIDFFPLTCDYRER 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           T A GK PGG+++RE RPT  E L SR++DR IRPLF K +++E Q+   V+  D ++  
Sbjct: 64  TAAAGKFPGGFIKREGRPTTKETLTSRLVDRPIRPLFPKGFRDEVQIQSIVLSSDKQNDG 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V++M  A  AL +S LPF GP+   +V  INGQ+V  P  D+ + S LDL VSG++  V
Sbjct: 124 DVLAMNGAGCALFISALPFNGPIASVRVGRINGQFVAFPTHDDLETSDLDLIVSGSEREV 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVIDSKDFSK 239
            M+E  A +L E+ + +AI+F HN    VI  I  L +  A      KEP    + D  +
Sbjct: 184 AMIEGFARELPENDMFEAILFAHN----VIRDICALQREFAAKIGVNKEPFPAPAPD--E 237

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN--EGEIV-SVFE 296
           L E +     E+L+ +     K+ R + +  +K   ++ F  + ++ +  + E++ +VF 
Sbjct: 238 LFERLKSRFFEELKTARQTVGKHARAEAVKAVKNAAIAEFIPDPTAPDAIKPEVLKTVFH 297

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++   VR+++L   +R DGRD+ T+R+I  +V +L R HGS++F RG+TQA++ +TLGT
Sbjct: 298 DLEELAVRSLIL-SGIRSDGRDNRTLRNIECEVDVLPRVHGSAVFQRGETQALITITLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ VD L       FM+ YNF   + GEV  +  P RREIGHG LA R+++PVLP  
Sbjct: 357 AKDEQRVDGLFDEYAKKFMLDYNFPSFSVGEVRPIRGPGRREIGHGALAERSVNPVLPAP 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFII 475
            +FPYT+R++S+I ES+GSSSMA+VCG++L LM AGVPIS PVAGI++GLV++ + ++++
Sbjct: 417 EEFPYTIRVISDIMESNGSSSMASVCGATLGLMAAGVPISNPVAGISVGLVRESEQNWVL 476

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDH G MDFK+AGT +GIT +Q+D+K+ GIS +I+    +Q++  R+ IL +M
Sbjct: 477 LTDIIGDEDHFGDMDFKIAGTQNGITGIQLDLKVEGISTDIIRATFEQSREARIQILRKM 536

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+   + ++  + PR+    I P++I  +IG GGK+IRGI E TG  + +DD G V I
Sbjct: 537 LTVIPRPKDEISPWAPRLIRTQIDPEKIGMLIGPGGKMIRGIQEATGCVIEVDDSGVVTI 596

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ASS+    EAA   + ++T   ++ KIY G++  + DFGAFV     RDGLVHIS+LS  
Sbjct: 597 ASSNREWAEAALAQVEAVTATVQIGKIYNGRITSIKDFGAFVEIIPGRDGLVHISELSGG 656

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            V+  ++V + GD + V ++D D+  ++KLS +   +  G P
Sbjct: 657 FVSSVAEVCRVGDEMKVLVIDVDEHDRVKLSRRKAHEELGLP 698


>gi|55820183|ref|YP_138625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus LMG 18311]
 gi|55822071|ref|YP_140512.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus CNRZ1066]
 gi|81559948|sp|Q5M1W9|PNP_STRT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81561123|sp|Q5M6F9|PNP_STRT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|55736168|gb|AAV59810.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
           LMG 18311]
 gi|55738056|gb|AAV61697.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
           CNRZ1066]
          Length = 741

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/693 (40%), Positives = 430/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+ + GRPL +E G++A+Q++GAV+  YG+T VL+  V  + +    +FFPL VNY+
Sbjct: 4   QTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATA-NFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   D++   LDL V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++     + L+ 
Sbjct: 183 AINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLKA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+  +  + L  +  + EK  R      +K+++++ +    +   + E     +V + E 
Sbjct: 243 EIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDEDKETILRDVVEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + K+R DGR  + +R + A++  L   HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I S
Sbjct: 543 AIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ +  
Sbjct: 603 SDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKHT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DVVK GD V VK++  D++G++  S+K +
Sbjct: 663 EHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTL 695


>gi|330443786|ref|YP_004376772.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
           E58]
 gi|328806896|gb|AEB41069.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
           E58]
          Length = 693

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/683 (42%), Positives = 430/683 (62%), Gaps = 13/683 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L  ETG+IARQ+ G+V+    +T+V  T V    L +  DF P  V+YQE+  + GK
Sbjct: 13  GRVLIFETGKIARQAGGSVVVRSQDTLVF-TSVCAADLSETSDFLPFRVDYQEKFSSTGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
             GG+++RE RPTE EIL+SR+IDRS+RP        + Q++  V  +D ++ P  +++ 
Sbjct: 72  TLGGFIKREGRPTEKEILVSRLIDRSLRPSLPNRLMQDIQILSYVWSYDGQTLPDPLAIC 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            A AAL LS +P    V G ++ YI+GQ+++NP   E D    DL ++GT++A+LM+E  
Sbjct: 132 GAGAALALSNIPQNNIVSGVRIGYIDGQWIVNPTKTELDNSPFDLVLAGTENAILMIEGH 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEEEMSQ 246
               +E+ VL+AI +GH     + + +    +   KE      + +  + F+ +E  ++Q
Sbjct: 192 CAFFTEEQVLEAIDYGHKHIITICKGLKDWQQRVGKEKNFDAVLPLPKEVFTAVENRIAQ 251

Query: 247 MIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            +      S F I  K         ++++++     +   ++   I S F+ +++  +RT
Sbjct: 252 PLP-----SLFDIEGKQALEAASQKMEEELIQELEKDDKIFSAFNIKSAFKALKSDSMRT 306

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++K+R D R   T+R IS +V LL RTHGS LF RG+TQ + V TLG     Q  ++
Sbjct: 307 LIRERKIRADKRALTTIRPISIEVALLPRTHGSCLFTRGETQTVAVCTLGNETMAQRYEN 366

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+G   + F + Y+F P + GEV R+G+P RREIGHG+LA +A+   LP   QFPYT+RI
Sbjct: 367 LNGEGSSKFYLQYSFPPFSVGEVGRIGSPGRREIGHGKLAEKALAHALPDATQFPYTIRI 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
            S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D ++ IILSDISG EDH
Sbjct: 427 ESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDAEEAIILSDISGLEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAG   GITA QMD+KI GI+ +IM  AL QAK GR  IL  M + L+  +  
Sbjct: 487 LGDMDFKVAGNLEGITAFQMDIKIEGITLDIMKQALAQAKEGRQEILRIMHENLAAPKSD 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L ++ PR+E M I P +I  VIG GGK IR I+E+TG +++I+D GTV I++ S   I  
Sbjct: 547 LSQYAPRIETMQIKPSKIATVIGPGGKQIRQIIEETGVQIDINDFGTVSISAVSSEAINK 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+++I  +    EV K+Y+G++V ++ FGAF+     ++GL HIS+ S +R+ + SD+ K
Sbjct: 607 AKKIIEGLVGEVEVGKVYRGRIVSIVPFGAFIEILPGKEGLCHISEFSKQRIEQVSDLFK 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
           EGD + VKL+  +++G++KLS K
Sbjct: 667 EGDMIDVKLISINEKGQLKLSHK 689


>gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
 gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
          Length = 756

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/692 (42%), Positives = 444/692 (64%), Gaps = 16/692 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  +   G+ L+  TG++A+Q++GA+ A  G+TVVL T       + G DFFPL V+++E
Sbjct: 4   TYSLTVGGQELQFTTGKVAKQANGAIWARVGDTVVLTTACMTDKPRVGLDFFPLLVDFEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R Y+ GKIPGG+++RE RP++  IL +R+IDRSIR LF    +++  V+  V+  D +++
Sbjct: 64  RYYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFEDWMRHDVHVVTTVLSVDQKNT 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P+++++ AASAAL +S +P+ GPV   ++ Y+NGQ V+NP  D+  + SLDL V+G  D 
Sbjct: 124 PNILAINAASAALCISDIPWNGPVGAVRMGYVNGQLVVNPTEDQMPESSLDLTVAGHADG 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--E 242
           + MVE  A+++ E +++DA+     E + + +   K+     +E I +  ++    E  E
Sbjct: 184 ITMVEAGAHEVPEALLIDALGVAQEEIRKICQFQLKM-----REEIGLPKRELPHTEVIE 238

Query: 243 EMSQMIKEDLR----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + + + ++L+    V+  I +K  R   I  L  K V +F+ E+   +   I  V E  
Sbjct: 239 PIDKWVADNLQDEVAVAVMIHDKKERGAAISALVDKAVEHFAVEYPD-SAVYISGVVEGW 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR- 357
             K +R +   +KVR DGR ++ +R IS ++GLL R HGS+LF RG+T ++   TLG   
Sbjct: 298 VKKKMRYITAHQKVRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLG 357

Query: 358 EDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ED+Q +D L   + N  F++HYNF P + GEV  M  P RREIGHG LA RA+ P++P  
Sbjct: 358 EDDQMMDGLKHNEPNKRFLLHYNFPPFSVGEVRPMRGPGRREIGHGALAERALAPIIPSE 417

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+VS+I ES+GSSS A++CG SLALM AGVP+   VAGIAMGL+K+GDD +IL
Sbjct: 418 EDFPYVVRVVSDILESNGSSSQASICGGSLALMAAGVPVKCHVAGIAMGLIKEGDDVVIL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  G+TA+QMD K GGI++ I+  AL QA++ R+ IL++M 
Sbjct: 478 TDIQGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITKEILTQALGQARKARMEILDKME 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++ + ++L ++ PR+  M I  ++IR+VIG GGKVIR IV ++GAKVN++DDGT+ I+
Sbjct: 538 ACIA-APVELSQYAPRIFTMQIDVEKIRDVIGTGGKVIRNIVAESGAKVNVEDDGTIYIS 596

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    ++ A +MI  I       + + G+V ++M FGAFV     ++GL+H+S++ST  
Sbjct: 597 STEPEAVKKAEKMITDIVRDVVAGEAFFGRVTRLMSFGAFVEVLPGKEGLLHVSEVSTRH 656

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + K   V   GD V V + + DD+ +I LS +
Sbjct: 657 IDKIESVFAPGDQVMVMVKEIDDQNRINLSRR 688


>gi|50915014|ref|YP_060986.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10394]
 gi|81371590|sp|Q5X9W0|PNP_STRP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50904088|gb|AAT87803.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 710

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/694 (40%), Positives = 433/694 (62%), Gaps = 10/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T    +AG PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY+
Sbjct: 4   QTFTTTFAGNPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QV   V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ 
Sbjct: 183 AINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFE 296
           ++       L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E
Sbjct: 243 DIVAKYNAQLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|220929129|ref|YP_002506038.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           cellulolyticum H10]
 gi|254782714|sp|B8I2R5|PNP_CLOCE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219999457|gb|ACL76058.1| 3' exoribonuclease [Clostridium cellulolyticum H10]
          Length = 703

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/695 (41%), Positives = 439/695 (63%), Gaps = 11/695 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L +ETG++A+ ++G+ L  YG+TV++++     + +DG DFFPL+V+Y+ER Y
Sbjct: 7   MELAGRTLTVETGKLAQLANGSALIRYGDTVIMSSATASAAPRDGIDFFPLSVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE +P+E  IL SR+IDR IRPLF K  +N+  V+  VM  + ++SP +
Sbjct: 67  AVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPEI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVL 186
            +M+ AS A+ +S +PF GP+ G  +  ++G+ ++NP  +E +    ++V+  GT++ + 
Sbjct: 127 AAMIGASVAISISDIPFNGPIGGVVLGLVDGEVIINPN-EEQRAKSKMYVTLAGTKEKIT 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           M+E  A+ + +DV+ DAI  GH E K + + I+ + K   K     +S D  + L E + 
Sbjct: 186 MIEAGADIVPDDVMFDAIKKGHEEIKKICDFINGIVKEVGKAKFTYESADVPADLFEVVK 245

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           +   + +R++    +K  R  ++  L ++  +  + +     E +I      ++ KVVR 
Sbjct: 246 EFAYDKMRIAVLATDKQDRDAKVSQLTEETQAALAEQFPEM-ESKINDALYKLEKKVVRE 304

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L +  R+DGR  + +R +SA+VG+L RTHGS LF RG TQ +  VTLG   D Q +D 
Sbjct: 305 YILKEGKRIDGRRLDEIRTLSAEVGILPRTHGSGLFERGQTQVLTTVTLGAMGDVQMLDG 364

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +   +   +M HYNF   + GE      P RREIGHG LA R++ PV+P   +FPY  R+
Sbjct: 365 IDTEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTETEFPYAFRL 424

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILSDISGD 482
           VSE+  S+GS+S  +VCGS+LALMDAGVPI  PVAGI+ GLV D    D+F+   DI G 
Sbjct: 425 VSEVLMSNGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEENPDNFVTFMDIQGI 484

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSE 541
           ED  G MDFKVAGT  GITA+QMD+K+ G+S  I+  A +  + GRL I+N+ + K + +
Sbjct: 485 EDFFGDMDFKVAGTTEGITAIQMDIKVDGLSYEIIRQAFELTRMGRLQIINDVILKAIPQ 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L E+ P++    I P++IR+VIG GGK+I  I+ +TG K++I++DG V I +   A
Sbjct: 545 PRKELSEYAPKIITTNIDPEKIRDVIGPGGKMINKIIAETGVKIDIEEDGRVYILTPDSA 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A ++I+ I    E  ++Y G+VV++  FGAFV     +DGLVHIS+L  +RV K  
Sbjct: 605 AAQKALKIIQGIAKDIEPGEVYLGKVVRITTFGAFVEILPGKDGLVHISKLDKKRVEKVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQNT 694
           DVV  GD + VK+ + D +G+I LS K  + ++NT
Sbjct: 665 DVVSIGDEILVKVTEIDKQGRINLSRKDAMAEENT 699


>gi|312972565|ref|ZP_07786738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           1827-70]
 gi|310332507|gb|EFP99720.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           1827-70]
          Length = 595

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/572 (48%), Positives = 393/572 (68%), Gaps = 14/572 (2%)

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ 
Sbjct: 9   NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 68

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKD 236
           AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+      
Sbjct: 69  AVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------ 122

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +  
Sbjct: 123 NEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILH 182

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT
Sbjct: 183 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 242

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  
Sbjct: 243 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 302

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++L
Sbjct: 303 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 362

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M 
Sbjct: 363 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 422

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA
Sbjct: 423 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 482

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++   + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +R
Sbjct: 483 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 542

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K +D ++ G  V VK+L+ D +G+I+LS+K
Sbjct: 543 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 574


>gi|17231888|ref|NP_488436.1| polynucleotide phosphorylase/polyadenylase [Nostoc sp. PCC 7120]
 gi|81770047|sp|Q8YP11|PNP_ANASP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17133532|dbj|BAB76095.1| polyribonucleotide nucleotidyltransferase [Nostoc sp. PCC 7120]
          Length = 718

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 296/692 (42%), Positives = 433/692 (62%), Gaps = 15/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSPG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ QV+   M  D +  P V
Sbjct: 67  AAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQVVALTMSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V+M
Sbjct: 127 LAVTGASIATLIAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKE-PIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A    +++L     +E P  +D    + + +
Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIKAQLDLVAELGLEIVQEAPPEVDQTLENYIRD 246

Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEIVSVFE 296
             S  IK+ L +     PE+      + D     ++    E      ++ N   + + F+
Sbjct: 247 RASDEIKKILAQFELTKPERDAALDVVKDNIATAIAELPEEDPIRLAATANSKALGNTFK 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355
           DI    +R  +++  VR+DGR  + VR +S+QVG+L +R HGS LF RG TQ +   TLG
Sbjct: 307 DITKYFMRRQIVEDNVRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLG 366

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           T  D Q + D L   Q   ++ HYNF P + GE   + AP RREIGHG LA RAI PVLP
Sbjct: 367 TPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAILPVLP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD+  
Sbjct: 427 PKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEVR 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S  ++  A+ QAK  RLHIL++
Sbjct: 487 VLTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKISGLSLEVIAQAIHQAKDARLHILDK 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + + R +   + PR+  + I PD I  VIG GGK I+GI E+TGAK++I+DDGTV 
Sbjct: 547 MLQTIDQPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDDGTVT 606

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I++    + + AR +++ +T       +Y G+V +++  GAFV F   ++G++HISQL+ 
Sbjct: 607 ISAVDENKAKRARNIVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQLAD 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            RV K  D V  GD V VK+ + D++G+I L+
Sbjct: 667 YRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698


>gi|62185343|ref|YP_220128.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila abortus
           S26/3]
 gi|81312506|sp|Q5L5B4|PNP_CHLAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|62148410|emb|CAH64177.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus
           S26/3]
          Length = 694

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/698 (42%), Positives = 430/698 (61%), Gaps = 22/698 (3%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V +E  G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V
Sbjct: 3   FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ANLEEAVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  ++GK  GG+++RE RPTE EIL SR+IDRS+RP        + Q++  V  +D
Sbjct: 61  DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
             + P  +++   SAAL +S +P    V G +V ++N ++V+NP + + D   ++L ++G
Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T++A+LM+E   +  +E+ V++AI FGH     + +A+    K   KE    ++     L
Sbjct: 181 TENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKHIGKEK---NTSGIVSL 237

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDD----------LKKKMVSYFSSEHSSWNEGE 290
            EE+         V+ F+  K+V   +I +          L+ +++     E+  +    
Sbjct: 238 PEEVQSA------VNTFVEGKFVDLLKIKEKKAFEAASKQLENEVIEQLQEENEVFTAFN 291

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I   F+  ++  +R ++ ++ +R DGR   T+R IS     L RTHGS LF RG+TQ + 
Sbjct: 292 IKIAFKQAKSNFIRGLIREQGLRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMA 351

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TLG+    Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+ 
Sbjct: 352 VCTLGSEAMAQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALS 411

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
             LP   +FPYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ + 
Sbjct: 412 HTLPDPMKFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILED 471

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D   ILSDISG EDHLG MDFKVAG   GITA QMD+K+ GI+ +IM  AL QAK GR  
Sbjct: 472 DHVTILSDISGLEDHLGDMDFKVAGNTEGITAFQMDIKVEGITPDIMRAALAQAKEGRQD 531

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M + L+  +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D 
Sbjct: 532 ILETMKQALAAPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDS 591

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V I++SS   IE A+ +I  +    EV KIY+G+V  V+ FGAFV     ++GL HIS
Sbjct: 592 GLVSISASSPQAIEKAKSIIEGLVGEVEVGKIYEGRVTSVVPFGAFVEILPGKEGLCHIS 651

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + S +R+    D VK+GDT+ VKLL  +++G+ KLS K
Sbjct: 652 EFSKQRIDNVGDFVKQGDTLTVKLLSINEKGQYKLSHK 689


>gi|225620025|ref|YP_002721282.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
           hyodysenteriae WA1]
 gi|257096669|sp|C0R0E0|PNP_BRAHW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225214844|gb|ACN83578.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
           hyodysenteriae WA1]
          Length = 712

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/691 (41%), Positives = 442/691 (63%), Gaps = 11/691 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TV+  + G  L LETG +A+Q+ G+V    G T +LATVV  +      DFFPLTVNY E
Sbjct: 3   TVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I  V+  D +  
Sbjct: 63  KYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
              ++++A+SAAL +S +PF GPV   ++ Y NG+Y++NP+  E   S LD+ V+G++DA
Sbjct: 123 TDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVAGSKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           +LM+E EA ++SE+V + AI   H E +  I+  +++A +C  + I    ++  + + ++
Sbjct: 183 ILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKI---EQELFEFDADL 239

Query: 245 SQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            +M+ E     +  + + P+K  R + +D+   ++  Y  ++        ++  +   I+
Sbjct: 240 VKMVTEYGRDKIESANYNPDKTKRNESMDNAFNEIEEYIKTKVEDEKLISQVKGICHSIE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +++K +R DGR  + +R I+    L+ R HGS+LF RG TQ + +VTLG+ +D
Sbjct: 300 EEIVREAIVEKCMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D + G +   FM+HYNF P + GEV R GAP RREIGHG LA R+ + VLP   +F
Sbjct: 360 AQLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++  VAGIAMGL    D + IL+DI
Sbjct: 420 PYTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  GITA Q+D+K+ GIS  I+  AL+QAK+ R  IL+++   +
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           + +  ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V I D G V I +  
Sbjct: 540 ANAG-EISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++   ++I S    PEV ++Y G V  + DFGAFV      +GL HIS+L+ + V  
Sbjct: 599 TPTLDKTIKLINSYVKDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVMN 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +V+K GD V VK+LD    GK  LS K +
Sbjct: 659 VEEVLKIGDEVKVKILDVKG-GKYSLSRKAL 688


>gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
 gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
          Length = 696

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/698 (41%), Positives = 429/698 (61%), Gaps = 24/698 (3%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D    +    GR L++E G++  +++G  +  YG+TVV  T       +   DFFPL+V+
Sbjct: 5   DYRVFKTAIGGRLLEVEIGKVCEKANGQAMVKYGDTVVNVTATASEKPRADIDFFPLSVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++ER YA GKIPGG++RRE RP+E  IL SR+IDR IRPLF K + N+ QV+   M  D 
Sbjct: 65  FEERMYAAGKIPGGFIRREGRPSEKAILTSRLIDRPIRPLFPKGFYNDVQVVCTAMSIDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           + +P  V+M+ +S AL +S +P++GP     + YI+G YV+NP  ++   S L L VSGT
Sbjct: 125 DCTPESVAMIGSSIALTISDIPWDGPTASVVIGYIDGNYVVNPTQEQRAVSELHLVVSGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +DA++MVE  AN++ E V+L+AI+F H + K ++  I  + +   K     D +D+  L 
Sbjct: 185 KDAIMMVEAGANEVKESVMLEAILFAHEQIKQIVSFIEDIQREVGK-----DKRDYD-LY 238

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN---------EGEIV 292
           E  ++++     V+ F  +K      +   +++  +    E  +           E +I 
Sbjct: 239 EVPAEIVDA---VNDFAAQKMYDAVHVSGREERTAAMAQVETDTMEALSEKFEGVEKDIA 295

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +    ++ + VR +++D ++R D R    VR I     +L R HGS LF RG+TQ +   
Sbjct: 296 NALYALKKEKVRNLIIDDEIRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAA 355

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   D Q +D +       +M HYNF P + GE   + +P RREIGHG LA RA+ PV
Sbjct: 356 TLGGIGDAQVIDGIGVETEKRYMHHYNFPPYSVGEARPIRSPGRREIGHGALAERALLPV 415

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK---- 468
           LP    FPYT+R+VS++  S+GS+S A+VCGS +ALMDAGVPI  PVAGIAMGL++    
Sbjct: 416 LPSKEDFPYTIRVVSDVLSSNGSTSQASVCGSCMALMDAGVPIKAPVAGIAMGLIERVEE 475

Query: 469 DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           DG+    ILSDI G ED LG MDFKVAGT  GITA+QMD+K+ G+S+ ++  AL+QA+ G
Sbjct: 476 DGNSKMAILSDIQGLEDFLGDMDFKVAGTKEGITAIQMDIKVHGLSKEVLSQALEQAREG 535

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RLHI+ EM   +   R +L ++ PR+  M I P+Q+R VIG GGK I  I ++TGAK+++
Sbjct: 536 RLHIMGEMLDEIDAPRAELSKYAPRIITMKIDPEQVRVVIGPGGKTINKITQETGAKLDL 595

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDGTV I +  +    A ++ +  +T   EV ++Y+G+V ++M FGAF+     ++GL+
Sbjct: 596 EDDGTVFITAPDMESAHACQQAVELLTKDVEVGEVYEGEVKRIMAFGAFIEVLPGKEGLL 655

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           HIS+++  RV K  DV+  GD V VK+ + DD+G+I L
Sbjct: 656 HISKMADYRVDKVEDVMNLGDKVKVKVKEIDDQGRINL 693


>gi|254992778|ref|ZP_05274968.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J2-064]
          Length = 658

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/635 (44%), Positives = 412/635 (64%), Gaps = 5/635 (0%)

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   D + SP 
Sbjct: 2   YSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPE 61

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+GT DA+ 
Sbjct: 62  MAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAIN 121

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMS 245
           MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      +LE E+ 
Sbjct: 122 MVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVK 181

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNE--GEIVSVFEDIQAKV 302
              +  ++ +    EK  R   I+++K++++ SY + E  +  E  GE+  + E I+   
Sbjct: 182 AASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKDE 241

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL    + Q 
Sbjct: 242 MRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQI 301

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P   +FPYT
Sbjct: 302 IDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYT 361

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ ILSDI G 
Sbjct: 362 IRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQGM 421

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  ++  +S  
Sbjct: 422 EDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAP 481

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV IAS   A 
Sbjct: 482 REELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAM 541

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
              A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ ERV K  D
Sbjct: 542 NRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVED 601

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 602 ILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 636


>gi|94987448|ref|YP_595381.1| polynucleotide phosphorylase/polyadenylase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|187610280|sp|Q1MPL7|PNP_LAWIP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94731697|emb|CAJ55060.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Lawsonia intracellularis PHE/MN1-00]
          Length = 736

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/690 (42%), Positives = 451/690 (65%), Gaps = 19/690 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ +  ETG +A Q++G++    G T+VL TV   + L+  + FFPLTV Y E+ YA G+
Sbjct: 16  GKEIIFETGYMATQANGSLTVQCGGTIVLVTVC-SQPLESDKGFFPLTVEYSEKMYAAGR 74

Query: 73  IPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           IPG + RRE  RP+E E LISR+IDR IRP+F K    + Q++ NV+  D E+   ++++
Sbjct: 75  IPGSFFRREIGRPSERETLISRLIDRPIRPMFPKGLAEDVQILANVISSDQENESDILAV 134

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
             ASAA+MLS LPFE  +   ++  +NGQ+VLNP ++E + S L++  + + +AV+MVE 
Sbjct: 135 TGASAAVMLSSLPFECAIAAGRIGRLNGQFVLNPTINEIELSDLNIVFAASSEAVVMVEG 194

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI----VIDSKDFSKLEEEMSQ 246
           EAN + E+++++A+ +GH E +P+I   +K+ ++  +  I    V ++  FSK  EE++ 
Sbjct: 195 EANVVEEEIIIEALEWGHKEIQPIITLQNKIQELAGRNKIPFVPVEENIVFSKKVEELAD 254

Query: 247 M--IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI----QA 300
              I E ++V     EK  R +    +K+K+++    +       +I++   +I    + 
Sbjct: 255 KFGIVEAMQVK----EKQFRKEARKAVKEKVLAILKEDPLYAEHSDILNTVSEIIGNLEK 310

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR  ++ + +R+DGRD+ TVR I+ +VGLL RTHGS+LF RG+TQ++ + TLG+  D 
Sbjct: 311 KIVRQRIVKENLRIDGRDTITVRPIAIEVGLLPRTHGSALFTRGETQSLCITTLGSSTDN 370

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VDSL+G    +FM+HYNF P + GEV  +   SRREIGHG LA +A+  +LP    FP
Sbjct: 371 QRVDSLAGDTVKNFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEKALKYILPSQNTFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +T+RIV+E  ES+GSSSMA +CG  L+LMDAGVPIS PVAG+AMGL+K+ D FI+L+DI 
Sbjct: 430 FTVRIVAETLESNGSSSMAAICGGCLSLMDAGVPISAPVAGVAMGLIKEDDQFIVLTDII 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDED  G MDFK+AGT  GITA+QMD+KI G++ ++M  A++QA+  R+HIL+EM+K L 
Sbjct: 490 GDEDAFGDMDFKIAGTTKGITAVQMDIKITGLTTDVMRKAMEQAREARIHILSEMAKALD 549

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  L ++ P+   + + PD IR +IG GGK I+ I   TGA ++I+D G + I + + 
Sbjct: 550 VPRSNLSQYAPQHAELVVNPDAIRMIIGPGGKNIKQITTVTGAAIDINDSGKISIFAPTS 609

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +E A++MI      PE+ K YKG+V K+++ GA +      +  VHISQL+ E +A+ 
Sbjct: 610 EAMEQAKQMILYYDQRPELGKNYKGKVRKILEIGAILEIMPNVEAFVHISQLAVEHIAQV 669

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +DVV+ G+ + +K+++     +++ S K V
Sbjct: 670 TDVVQLGEDMIIKVIEITG-DRVRASRKAV 698


>gi|188589111|ref|YP_001920624.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251780820|ref|ZP_04823740.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|226702637|sp|B2V4H5|PNP_CLOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188499392|gb|ACD52528.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E3
           str. Alaska E43]
 gi|243085135|gb|EES51025.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 704

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/691 (42%), Positives = 438/691 (63%), Gaps = 15/691 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           AG+ +K+E G+I   S+ A   +YG+TV+L  V      + G DFFPL+V Y+ER YAVG
Sbjct: 10  AGKEMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVG 69

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP+E  IL  R +DR++RPLF K Y+N+ QV+  V+  + ++ P ++++
Sbjct: 70  KIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAI 129

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
            AAS AL LS +PF  PV   QV  I+  +++NP   E ++ +L L V  T++ V+M+E 
Sbjct: 130 NAASMALCLSSIPFAMPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKERVMMIEA 189

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEEEMS 245
             N++ ED+++ AI FG +EC+ +I    +  K   KE        +D +    ++E  S
Sbjct: 190 GGNEIPEDIMIAAIKFGFDECQNIINFQEEAVKKFGKEKDIPTLFTVDEEVEKDIKEFAS 249

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            MIKE    + +I +K  R   ID + +K+   F  ++     G+I  V  ++Q KVVR 
Sbjct: 250 DMIKE----AMYITDKDERNAAIDAVNQKVKEEFGEKYED-KFGDIKEVLYNMQKKVVRH 304

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L  K R DGR  + VR +  +VGLL RTHG+ LF RG TQ + V TLG   D Q +D 
Sbjct: 305 MLLKDKRRPDGRAFDQVRPLGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDG 364

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +   Q   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +FPYT+R+
Sbjct: 365 IDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEEFPYTIRL 424

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDE 483
           VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+   D  +  +L+DI G E
Sbjct: 425 VSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLSEEQVLTDIQGIE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ R+ IL ++++ +S  R
Sbjct: 485 DFFGDMDFKVAGTTEGITSIQVDTKLKGFSFNVVENAIRDARKARMTILEKINECISSPR 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             +  + P+ E + I PD+IR+VIG GGKVI  I++ TG K++I +DG+V ++SS    +
Sbjct: 545 EDVSLYAPKTETIQIDPDKIRSVIGAGGKVINKIIQDTGVKIDIKEDGSVFVSSSDHEGV 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  ERV K  DV
Sbjct: 605 KEAIKIIEGLTKDVKAGEIYLGKVTKITTFGAFVEILPNKEGLVHISKLDKERVNKVEDV 664

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK--VVDQ 692
           V  GD + VK+ + D +G+I LS K  ++DQ
Sbjct: 665 VSVGDEILVKVTEIDSQGRINLSRKDVLLDQ 695


>gi|297620923|ref|YP_003709060.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297376224|gb|ADI38054.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 698

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/686 (42%), Positives = 437/686 (63%), Gaps = 17/686 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +  ETG+IARQ++GAV+   GET++  +        +  DF PL V+YQE+  + GK  G
Sbjct: 15  ITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRVDYQEKFASAGKTLG 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RPTE E L+ R+IDR IRPLF + Y  +TQ++  V  +D  +SP  +++ AAS
Sbjct: 75  GFIKREGRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVWSYDGVNSPDALAICAAS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL +S +P +  V   +V  I+GQ++LNP ++  + S LDL ++GT+DAVLM+E     
Sbjct: 135 AALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVLDLMIAGTEDAVLMIEGYCKF 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE-------EEMSQM 247
           L+E+ V++AI  GH   + +  A+    +   K       K+ SKL+       + + ++
Sbjct: 195 LTEEQVIEAISIGHQGIQTICRALENWRQEVGK------PKNLSKLKPLAKEVIDAVEEL 248

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDIQAKVVR 304
           +K+DL     I +K  R +  D +KK++         E   +   E+   F+ + +  +R
Sbjct: 249 VKDDLNQVLQIVDKKEREEAFDQIKKRVNETLCPEGEEAPKFEALEVAKAFKKVSSGHMR 308

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            +++ +  R DGR +  VR I  + GLL RTHG SLF RG+TQ + + TLG     Q  +
Sbjct: 309 RMIVKENKRSDGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGGNNMAQRYE 368

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+G     F + Y F P + GEV R+G P RRE+GHG+LA RA+  +LP   +FPYT+R
Sbjct: 369 DLNGEGSRSFYLQYFFPPFSVGEVGRVGPPGRREVGHGKLAERALASILPSKEEFPYTIR 428

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + S ITES+GSSSMA+VCG  LA+MDAGVPI++PV+GIAMGL+ + + + ILSDI G ED
Sbjct: 429 LESNITESNGSSSMASVCGGCLAMMDAGVPITRPVSGIAMGLILEENHYTILSDILGIED 488

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKV G  +GITA QMD+K+ GI+ +IM  AL QAK GR+HIL +M +   E + 
Sbjct: 489 ALGDMDFKVTGDKNGITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEKMFEACPEPKK 548

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+E++ + P +I  +IG GGK IR I+E+TGA+++IDD+G V I+SS+L  ++
Sbjct: 549 QMSKYAPRIEVLKVKPSKIGTIIGPGGKQIRAIIEETGAEIDIDDEGFVTISSSNLDGLQ 608

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+ +I  +T   E+ K+Y+G++  V+ FG FV     ++GL HIS+  T+R    ++VV
Sbjct: 609 KAKRIIEDLTAEVEIGKVYEGKITSVVPFGIFVEILPGKEGLCHISEFDTQRTNDLNEVV 668

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD V VK++D ++RG++ LS KV+
Sbjct: 669 KVGDNVRVKVMDINERGQLVLSRKVL 694


>gi|111115640|ref|YP_710258.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii PKo]
 gi|123145624|sp|Q0SM46|PNP_BORAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110890914|gb|ABH02082.1| polyribonucleotide nucleotidyltransferase [Borrelia afzelii PKo]
          Length = 722

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/704 (41%), Positives = 438/704 (62%), Gaps = 33/704 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252
           +SED++L AI   H   K +  A  +   +   KE + +   +   + +EE+   I  DL
Sbjct: 194 VSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELRDFIYADL 253

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           + +CF+  K  R K I  L+ K   +FSS  +    NE      F+D + ++VR  +L+ 
Sbjct: 254 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFEKEIVRNSILND 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR    +RDI A+V +L RTHGSSLF RG+TQA+ V TLGT  DEQ +D + G +
Sbjct: 314 KIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI 
Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMIPGKNDFPYTIRVVSEIL 432

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD
Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT++GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M+ V+S SR+ + ++ 
Sbjct: 493 FKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVISNSRVGISKYA 552

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E I
Sbjct: 553 PKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEKI 612

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--------------- 655
            SI   P+V +IY+G V K+  FGAF+     ++G +     S +               
Sbjct: 613 ESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGHGNRYS 672

Query: 656 RVAKTSDVVK------------EGDTVWVKLLDFDDRGKIKLSM 687
           R     D ++            EG  + V+++D D  GKI L +
Sbjct: 673 RFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716


>gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
           DSM 12563]
 gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
           DSM 12563]
          Length = 716

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/691 (41%), Positives = 447/691 (64%), Gaps = 11/691 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TV+  + G  L LETG +A+Q+ G+V    G T +LATVV  +      DFFPLTVNY E
Sbjct: 3   TVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I  V+  D +  
Sbjct: 63  KYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
              ++++A+SAAL +S +PF GPV   ++ Y NG+Y++NP+  E   S LD+ V+G++DA
Sbjct: 123 TDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSELDIIVAGSKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           +LM+E EA ++SE+V + AI   H E +  I+  +++A +C  + I  +  ++ + L + 
Sbjct: 183 ILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEYDADLVKT 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQ 299
           +++  +  +  + + P+K  R + +D+   ++  Y  +   + ++ +++S    +   I+
Sbjct: 243 VTEYGRAKIEAANYNPDKTKRNESMDNAFNEIEEYIKT---TTDDEKLISQVKGICHTIE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +++K +R DGR  + +R IS  + L+ R HGS+LF RG TQ + +VTLG+ +D
Sbjct: 300 EEIVREAIVEKSMRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D + G +   FM+HYNF P + GEV R GAP RREIGHG LA R+ + VLP   +F
Sbjct: 360 AQLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPSKEKF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++  VAGIAMGL    D + IL+DI
Sbjct: 420 PYTVRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  GITA Q+D+K+ GIS  I+  AL+QAK+ R  IL+ +   +
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDIIDSTI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S +  ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V+I D G V I +  
Sbjct: 540 SNAG-EISDFAPKYKTMEVNPEKIRVLIGPGGKNIKSIIEETGSDVDIQDSGIVNIFAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++   ++I S    PE+ ++Y G V  + DFGAF+      +GL HIS+L+ + V  
Sbjct: 599 TPTLDKTIKLINSYVKDPEIGEVYDGVVKDIKDFGAFIEILPGVEGLCHISELAYKHVMN 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +V+K GD V VK++D    GK  LS + +
Sbjct: 659 VEEVLKIGDEVKVKIIDIKG-GKYSLSRRAL 688


>gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
           95/1000]
 gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
           95/1000]
          Length = 712

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/691 (41%), Positives = 441/691 (63%), Gaps = 11/691 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           TV+  + G  L LETG +A+Q+ G+V    G T +LATVV  +      DFFPLTVNY E
Sbjct: 3   TVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I  V+  D +  
Sbjct: 63  KYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
              ++++A+SAAL +S +PF GPV   ++ Y NG+Y++NP+  E   S LD+ V+G++DA
Sbjct: 123 TDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDIIVAGSKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           +LM+E EA ++SE+V + AI   H E +  I+  +++A +C  + I    ++  + + E+
Sbjct: 183 ILMIEGEAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKI---EQELFEYDAEL 239

Query: 245 SQMI----KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            +M+    +E +  + + P+K  R + +D+   ++  Y  ++        ++  +   I+
Sbjct: 240 VKMVTEYGREKIEAANYNPDKAKRNESMDNAFNEVEEYIKTKIEDEKLISQVKGICHSIE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +++K +R DGR  + +R IS    L+ R HGS+LF RG TQ + +VTLG+ +D
Sbjct: 300 EEIVREAIVEKGMRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D + G +   FM+HYNF P + GEV R G+P RREIGHG LA R+ + VLP   +F
Sbjct: 360 AQLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++  VAGIAMGL    D + +L+DI
Sbjct: 420 PYTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  GITA Q+D+K+ GIS  I+  AL+QAK+ R  IL+++   +
Sbjct: 480 QGVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S    ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V I D G + I +  
Sbjct: 540 SNPN-EISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVINIFAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++    +I S    PEV ++Y G V  + +FGAF+      +GL HIS+L+ + V  
Sbjct: 599 TPTLDKTISLINSYVKDPEVGEVYDGVVKDIKEFGAFIEILPGVEGLCHISELAYKHVMN 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +V+K GD V VK++D    GK  LS K +
Sbjct: 659 VEEVLKIGDEVKVKIIDVKG-GKYSLSRKAL 688


>gi|219684925|ref|ZP_03539866.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii PBr]
 gi|219671663|gb|EED28719.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii PBr]
          Length = 721

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/703 (41%), Positives = 441/703 (62%), Gaps = 32/703 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGEFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252
           +SED++L AI   H   K +  A  K  ++   KE + +   +   + +EE+   I  DL
Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKKFLEIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 253

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           + +CF+  K  R K I  L+ K   +FSS  + +  NE      F+D + ++VR  +L+ 
Sbjct: 254 KDACFVKGKLNRDKAIALLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G +
Sbjct: 314 KIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI 
Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD
Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+S+SR+ + ++ 
Sbjct: 493 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 552

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E I
Sbjct: 553 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 612

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV- 663
            SI   P+V +IY+G V K+  FGAF+     ++G +        S+  + R    +   
Sbjct: 613 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGTGNRYS 672

Query: 664 -------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                              ++EG  + VK++D D  GKI L +
Sbjct: 673 RFGGGDNIRGNVGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEV 715


>gi|326202154|ref|ZP_08192024.1| polyribonucleotide nucleotidyltransferase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987949|gb|EGD48775.1| polyribonucleotide nucleotidyltransferase [Clostridium
           papyrosolvens DSM 2782]
          Length = 706

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/691 (41%), Positives = 435/691 (62%), Gaps = 9/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  +E AGR L +ETG++A+ ++G+ L  YG+TV++++     S +DG DFFPL+V+Y+
Sbjct: 6   KTFSMELAGRTLTVETGKLAQLANGSALIRYGDTVIMSSATASASPRDGIDFFPLSVDYE 65

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE +P+E  IL SR+IDR IRPLF K  +N+  V+  VM  + ++
Sbjct: 66  ERLYAVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDN 125

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQ 182
           SP + +M+ AS A+ +S +PF GP+ G  +  ++G+ V+NP  +E +    ++V+  GT+
Sbjct: 126 SPEIAAMIGASVAISISDIPFNGPIGGVVLGLVDGEVVVNPN-EEQRAKSKMYVTLAGTK 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           + + M+E  A+ + +DV+LDAI  GH   K + + I+ + K   K     +S D  + L 
Sbjct: 185 EKITMIEAGADIVDDDVMLDAIKKGHEVIKQICDFINGIVKEIGKPKFTYESADVPADLF 244

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +     + +R++    +K  R  ++ +L ++  +  + ++    E +I      ++ K
Sbjct: 245 AAVKAFAYDKMRIAVLATDKQDRDAKVSELTEETQAALAEQYPEM-ENKIKDAIYKLEKK 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L +  R+DGR  + +R +SA+VG+L RTHGS LF RG TQ +  +TLG   D Q
Sbjct: 304 VVREYILKEGKRVDGRSLDEIRPLSAEVGILPRTHGSGLFQRGQTQVLTTITLGAMGDVQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +   +   +M HYNF   + GE      P RREIGHG LA R++ PV+P   +FPY
Sbjct: 364 KMDGIDTEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTEIEFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---GDDFIILSD 478
             R+VSE+  S+GS+S  +VCGS+LALMDAGVPI  PVAGI+ GLV D    D+F+   D
Sbjct: 424 AFRLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEENPDNFVTFMD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+K+ G++  I+  A +  K+GRL I+N+ + K
Sbjct: 484 IQGIEDFFGDMDFKVAGTTEGITAIQMDIKVDGLNYEIIRQAFELTKKGRLQIINDVILK 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + + R +L E+ P++    I P++IR+VIG GGK+I  I+ +TG K++I++DG V I +
Sbjct: 544 AIPQPRKELSEYAPKIITTNIDPEKIRDVIGPGGKMINKIIAETGVKIDIEEDGRVYILT 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              A  + A  +I+ I    E  ++Y G+VV++  FGAFV     +DGLVHIS+L  +RV
Sbjct: 604 PDSAAAQKALRIIQGIAKDIEPGEVYLGKVVRITTFGAFVEILPGKDGLVHISKLDKKRV 663

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  DVV  GD + VK+ + D +G+I LS K
Sbjct: 664 EKVEDVVNIGDEILVKVTEIDKQGRINLSRK 694


>gi|24213647|ref|NP_711128.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658536|ref|YP_002622.1| polynucleotide phosphorylase/polyadenylase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|81406860|sp|Q72NX7|PNP_LEPIC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81470924|sp|Q8F7J8|PNP_LEPIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24194449|gb|AAN48146.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601779|gb|AAS71259.1| polyribonucleotide nucleotidyltransferase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 698

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 304/691 (43%), Positives = 432/691 (62%), Gaps = 10/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT+  ++    + LETG  A+Q+ GAV+   G  V+LATV      K+GQDFFPLT  Y 
Sbjct: 3   HTISGQYGRDTIVLETGSWAKQAHGAVVYKSGNLVLLATVCAADEAKEGQDFFPLTCEYT 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y  E Q+ + V+  D + 
Sbjct: 63  EKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S    ++ AASAAL +S +PF GP+ GA++  +NG+ +LNP   E   S LDL V+GT+ 
Sbjct: 123 SVAGHALNAASAALAVSDIPFNGPIAGARIGRVNGELILNPTTKEILNSDLDLVVAGTKT 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            ++M+E EA +LS + ++ A+ F     K + E ++   +   K  +V         +EE
Sbjct: 183 HIVMIEGEAKELSNEEMIAALRFAQ---KHIAEFVTLQEEYAKKIGVVKREVKLKVRDEE 239

Query: 244 MSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDI 298
           +   +KE     L  +   P+K  R K+I ++ K++V +F      S    +I +   ++
Sbjct: 240 LLSKVKEYAFAKLTTANQTPDKTARNKEISNVNKEVVEFFKDTIEDSDKIKDIKAYLHEL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L K  R DGR  + +R IS ++  L   HGS++F RG TQ++ VVTLGT  
Sbjct: 300 EYEIVREQVLTKGTRFDGRKLDEIRSISVEINPLPGPHGSAVFTRGQTQSLGVVTLGTGS 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q  ++L G +   FM+HYNF   + GEV R   P RREIGHG LA RA+  VLP+  +
Sbjct: 360 DNQRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKPDE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILS 477
           FPY +R+VSEI ES+GSSSMA+VC  SLALM AGVPI   V+GIAMGL  D    + +LS
Sbjct: 420 FPYVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIQGSVSGIAMGLFSDSSGKYAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI+G EDH G MD K+AGT  GITA QMD+K+ G+S +++    +QA+RGR HIL+ M K
Sbjct: 480 DIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S++   L    PR+ +  IP D+I  +IG GGK +RGI E TGA++ I+DDG V I+ 
Sbjct: 540 HISKASSTLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGKVTISG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S+    E A +M+       EV KIY+G+V ++ DFGAFV     ++GL HIS++  +RV
Sbjct: 600 SNQESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
               D+VKEGD + VK+L+ D  GKI LS K
Sbjct: 660 NSVKDIVKEGDIIRVKVLNVDKTGKIDLSRK 690


>gi|313888270|ref|ZP_07821941.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845673|gb|EFR33063.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 703

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/703 (41%), Positives = 449/703 (63%), Gaps = 20/703 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  ++ AG  LK+  G++A Q++GA L  YG+TVVL T       ++G DFFPL+V+Y+E
Sbjct: 4   TYTMDLAGSQLKVTIGKVAEQANGACLVQYGDTVVLVTATSSSKPREGIDFFPLSVDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y+N+  ++  V+  D + S
Sbjct: 64  KMYAVGKIPGGFIKREGRPSEKATLSARLIDRPLRPLFPEGYRNDVHIVATVLSVDQDHS 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P +V+M+ +S AL +S +PF+GP    +V YI+G+Y++NP  ++   S ++L ++GT+ A
Sbjct: 124 PEIVAMIGSSIALSISDIPFDGPTGSVEVGYIDGKYIINPNEEQRNNSRINLSLAGTKTA 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242
           ++MVE  A ++SE  +L+AI+ GH   K + + + ++AK   K     D  ++   K +E
Sbjct: 184 IMMVEAGAQEVSEAEMLEAILEGHEVIKEICDFVDEIAKEIGK-----DKAEYEVFKADE 238

Query: 243 EMSQMIKE---DLRVSCFI-PEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVF 295
           E+   +KE   DL V+     +K VR    +  K+ +  +F     EH+     +I S  
Sbjct: 239 EIVAKVKEFGQDLLVNAIREKDKVVREANTEKAKEAIKEHFEDLIEEHAK----DISSAI 294

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ++I+   +R  +++++ R D R    +R +S++VG+L RTHGS LF RG TQ + + TLG
Sbjct: 295 DEIEVNEIRRGIIEEERRPDDRKLTEIRHLSSEVGVLPRTHGSGLFTRGQTQVLSIATLG 354

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              +EQ +D L   +   ++ HYNF     G+     +P RREIGHG LA RA+ PV+P 
Sbjct: 355 AISEEQVIDGLGDDKPKRYIHHYNFPGFCVGDTKPSRSPGRREIGHGALAERALIPVIPD 414

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           + +FPYT+R+VSE+  S+GSSS A++CGS+LALMDAGVPI  PVAGIAMGL+++     I
Sbjct: 415 SEEFPYTIRVVSEVLSSNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIEEDGVIKI 474

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT  GITA+QMD+K+ GI + I+  AL++AK  R  IL+ +
Sbjct: 475 LTDIQGLEDHFGDMDFKVAGTRKGITAIQMDIKVEGIKKEILETALERAKDARFEILDHI 534

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  + + R +L ++ P + ++ I P++I  VIG GGK+I  I+EQTG K++IDDDG + I
Sbjct: 535 ATTIEKPREELSKYAPIIHMITIDPERIGEVIGAGGKIINKIIEQTGVKIDIDDDGKISI 594

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            S +  + + A  +I  I    EV ++Y G+V K++ FGAFV      +GL+HIS+++ E
Sbjct: 595 LSDNDEKAKEAIAIIEDIVKEIEVGEVYLGKVKKIVKFGAFVELKKGTEGLLHISEIAHE 654

Query: 656 RVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKP 697
           R     DV+K GD++ VK++D   D GKI LS K + +    P
Sbjct: 655 RTNNVEDVLKVGDSIEVKVIDIAKDTGKISLSRKALIEREDNP 697


>gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 708

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/684 (42%), Positives = 448/684 (65%), Gaps = 6/684 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + +ETG  A+Q++GAV+   GET V    V     +   DF PLTV Y+E+TYA GK
Sbjct: 17  GKEISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREKTYAYGK 76

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE +P+  EIL+SR+IDR IRPLF K + N+  +    +  D ++ P V+++ 
Sbjct: 77  IPGGFVKREGKPSNREILVSRLIDRPIRPLFPKGFHNDVIITAMTLSADDKNDPDVLAIT 136

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
             SAALM+S  PFEGP+ G +V  ++G+++ NP  +E D+  +D+ V+GT+DA++MVE  
Sbjct: 137 GVSAALMISEAPFEGPIAGVRVARVDGKFIANPTYEERDKSDMDIVVAGTKDAIVMVEGG 196

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKE 250
           + ++ E+ +L+AI+F H   K +I+   +L K   KE IV++  +   KL+E++ +  ++
Sbjct: 197 SEEVPEEEILEAIMFAHEHIKQLIDFQIELQKKVGKEKIVVEKDEIEEKLKEDLEKY-RD 255

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           ++  +  I +K  R K ID + +K V           + +I+  +++  ++++R  +   
Sbjct: 256 EIFEAFKIQDKKERNKTIDSIFEKAVEEIEIPEDILVKAKII--YKEFVSQLMREKVFKD 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-REDEQYVDSLSGT 369
           K R+DGR  + +R I  +VG+L R HGS+LF RG TQA+ VVTLG   E++       G 
Sbjct: 314 KTRIDGRKPDEIRPIWIKVGMLPRVHGSALFTRGQTQALGVVTLGAPGEEQIEESIEEGE 373

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           ++  FM+HYNF P + GE     APSRREIGHG LA RA+ P++P    FPY +R+VSEI
Sbjct: 374 EKKRFMLHYNFPPFSVGEARPPRAPSRREIGHGALAERALEPLIPSEEDFPYVIRVVSEI 433

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GS+SMATVC  SL+L DAGVP+ K VAGIAMGL+K+ D++IIL+DI GDEDHLG M
Sbjct: 434 LESNGSTSMATVCAGSLSLFDAGVPMQKHVAGIAMGLLKEEDEYIILTDILGDEDHLGDM 493

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  G+TA+QMD+KI G+++ I+  ALQQA++ R HIL+ M + + + R ++ ++
Sbjct: 494 DFKVAGTRDGVTAIQMDIKIKGLTKEILEKALQQARKARFHILDLMYEAIPQPRPEVSKY 553

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P V  + + PD+I  +IG  GK I+ I+++TG K++I+ DG VKI + +    + A +M
Sbjct: 554 APSVVKIRVLPDKIPLIIGPSGKNIKKIIDETGVKIDIEPDGLVKIYAVNKEAADKAVKM 613

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +    E   I+ G+V +V D+GAFV     R  L+H+SQ++ ER+    D +  GD 
Sbjct: 614 IDELVMDIEKGDIFLGKVTRVEDYGAFVELMPGRLSLLHVSQITGERLRSAKDKISVGDI 673

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693
           + VK++D D++G++K+S+K V ++
Sbjct: 674 LKVKVIDIDEQGRVKVSLKDVKES 697


>gi|75909486|ref|YP_323782.1| polynucleotide phosphorylase/polyadenylase [Anabaena variabilis
           ATCC 29413]
 gi|123608898|sp|Q3M7Z9|PNP_ANAVT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|75703211|gb|ABA22887.1| 3' exoribonuclease [Anabaena variabilis ATCC 29413]
          Length = 718

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/692 (42%), Positives = 432/692 (62%), Gaps = 15/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSAG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q++   M  D +  P V
Sbjct: 67  AAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTMSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V+M
Sbjct: 127 LAVTGASIATLIAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKE-PIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A    +++L     +E P  +D    + + +
Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIKAQLDLVAELGLEIVQEAPPEVDQTLENYIRD 246

Query: 243 EMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEIVSVFE 296
             S  IK+ L +     PE+      + D     ++    E      ++ N   + + F+
Sbjct: 247 RASDEIKKILAQFELTKPERDAALDVVKDNIATAIAELPEEDPIRLAATANSKALGNTFK 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355
           DI    +R  +++  VR+DGR  + VR +S+QVG+L +R HGS LF RG TQ +   TLG
Sbjct: 307 DITKYFMRRQIVEDNVRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLG 366

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           T  D Q + D L   Q   ++ HYNF P + GE   + AP RREIGHG LA RAI PVLP
Sbjct: 367 TPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAILPVLP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD+  
Sbjct: 427 PKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEVR 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S  ++  A+ QAK  RLHIL++
Sbjct: 487 VLTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKISGLSLEVIAQAIHQAKDARLHILDK 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +   R +   + PR+  + I PD I  VIG GGK I+GI E+TGAK++I+DDGTV 
Sbjct: 547 MLQTIDTPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDDGTVT 606

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I++    + + AR +++ +T       +Y G+V +++  GAFV F   ++G++HISQL+ 
Sbjct: 607 ISAVDENKAKRARNIVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQLAD 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            RV K  D V  GD V VK+ + D++G+I L+
Sbjct: 667 YRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698


>gi|224531821|ref|ZP_03672453.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia valaisiana
           VS116]
 gi|224511286|gb|EEF81692.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia valaisiana
           VS116]
          Length = 722

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/705 (41%), Positives = 441/705 (62%), Gaps = 35/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGLMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFSGPIAAVRMVYLNGEFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEMSQMIKED 251
           +SED++L AI   H   K +  A  +  ++  K+   P+  + K   + +EE+   +  D
Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLEIVGKKEKLPLAFEEKI-FEFKEELRDFVYSD 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  L+ K   +FSS  + +  NE      F+D + ++VR  +L+
Sbjct: 253 LKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNEPLFNRAFDDFEKEIVRNSILN 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DKIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEI 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++N+M  AL+QA+ GR+HIL+ M  V+S+SR+ + ++
Sbjct: 492 DFKVAGTKNGITGFQMDIKIENVTKNLMRDALEQARVGRIHILSIMDAVISDSRVGISKY 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E 
Sbjct: 552 APKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEK 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------------- 655
           I SI   P++ ++Y+G V K+  FGAF+     ++G +     S +              
Sbjct: 612 IESIVREPKIGEVYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYGSGRFGNSNRY 671

Query: 656 -RVAKTSDVVK------------EGDTVWVKLLDFDDRGKIKLSM 687
            R     D ++            EG  V V+++D D  GKI L +
Sbjct: 672 SRFGGGGDNIRGNAGLVRPSKLEEGQRVKVRIIDIDKFGKIDLEI 716


>gi|291530699|emb|CBK96284.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
           70/3]
          Length = 705

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 432/693 (62%), Gaps = 6/693 (0%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + T +  +AGR L +ETG++   ++G+    YGETVV+  V      ++G DFFPL
Sbjct: 1   MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+ YAVGKIPGGYL+RE RP+E  IL SR++DR +RPLF K  +N+  +++ V+ 
Sbjct: 61  AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D E+ P +++M+ AS A+ +S +P+ GP+ G  V  ++G+ VL P  ++   S L L V
Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPNAEQRAKSDLQLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237
           + ++  V+M+E  AN++ +D +L AI+ GH E  K +I  I ++     K      S + 
Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240

Query: 238 SK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L E +     E ++ +    +K VR +++  +K  + + F  ++       I     
Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG 
Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D +   +   +M HYNF   + GE      P RREIGHG LA+RA+ PV+P  
Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A++CGS+L+LMDAGVPI  PVAGI+ GL+ +GD ++ +
Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
            DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A  +  + R +IL+E M
Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R  + ++ P++    +P D+IR VIG GGKVI+ +      K++ID++G V I
Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
               L + +    MI++IT  PEV  IYKG+VV++M+FGAFV     +DG+VHIS+L   
Sbjct: 600 CGQDLEKAQNCIAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+L+ D++GKI+LS K
Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRK 692


>gi|119953582|ref|YP_945792.1| polynucleotide phosphorylase/polyadenylase [Borrelia turicatae
           91E135]
 gi|119862353|gb|AAX18121.1| polyribonucleotide nucleotidyltransferase [Borrelia turicatae
           91E135]
          Length = 727

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 297/709 (41%), Positives = 437/709 (61%), Gaps = 45/709 (6%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++GAVLATYG + VLATV    S ++  DF PL+V Y E+ YA GKIPG
Sbjct: 24  LILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIPG 83

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  + P +V M AA 
Sbjct: 84  GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 143

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D + MVE  AN+
Sbjct: 144 AAVFLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 203

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMC-------AKEPIVIDSKDFSKLEEEMSQM 247
           +SE+V+L AI    ++    I+ I  L K          K P+  + + F + + E+   
Sbjct: 204 VSEEVLLAAI----DQAYEYIKQICNLQKEFILIVGEREKLPLAYEERVF-EFKAELKDF 258

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRT 305
           I  +L+ +CF+  K  R K I  +K+K   +FSS  +    NE       +D + ++VR 
Sbjct: 259 IYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSVSQVDEENETLFYKALDDFEQEIVRR 318

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L+  +R DGR+   +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  DEQ +D 
Sbjct: 319 SILENNLRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDD 378

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   FPYT+R+
Sbjct: 379 IDGDKRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRV 437

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGLV +GD ++ILSDI G+EDH
Sbjct: 438 VSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSDILGEEDH 497

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT +GIT  QMD+KI  +++ +M  AL QA+ GR+HIL+ M  V+S SR  
Sbjct: 498 LGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDSVISRSRDD 557

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +   +++ 
Sbjct: 558 ISVNAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQK 617

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-- 663
           A+  I SI   P++ +IY+G V K+  FGAF+     ++G   +S     R  +  D+  
Sbjct: 618 AKARIESIVREPKIGEIYEGVVKKINSFGAFIELTPTKEGF--LSNRPKSRDDRYGDMRH 675

Query: 664 -------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                    ++EG  V V++ D D  GKI+L +
Sbjct: 676 SRYGSGRHSRYGRDSRNTFAMRPPRLEEGQMVKVRISDIDKFGKIELEL 724


>gi|255524222|ref|ZP_05391181.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|296185343|ref|ZP_06853753.1| polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|255512047|gb|EET88328.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|296050177|gb|EFG89601.1| polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
          Length = 709

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/691 (42%), Positives = 440/691 (63%), Gaps = 11/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T+E   AGR LK++ G++   S+ A+L +YGETVVL         ++G DFFPL++ Y+
Sbjct: 3   QTLETTVAGRTLKIDFGKVGMLSNCALLVSYGETVVLINANASEKPREGVDFFPLSIEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYAVGKIPGGFIKREGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVEQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           +P ++++  AS AL LS +PF  P+    V  ++ ++V+NP L++  + +L+L V  T++
Sbjct: 123 APDILAINGASIALSLSSIPFNTPLGAVSVGLVDDEFVINPTLEQRGKSTLNLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSK 239
            V+MVE   +++ EDV+ DAI+FG  ECK ++    EA+ KL K    EP +    +   
Sbjct: 183 RVMMVEAGGSEIPEDVMYDAIMFGFEECKKIVAFQEEAMEKLGKQKV-EPKLYKVDE--G 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LE+E+     E ++ + +I +K  R   ID +K+K+   F  ++   N  +I  V   +Q
Sbjct: 240 LEKEVRDFSFEMIKEAMYIMDKDERNAAIDSVKEKINDEFGEKYPD-NGADIAEVVYKLQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++L++  R DGR  E +R IS +VGLL RTHG+ LF RG TQ + V TLG   D
Sbjct: 299 KEIVRNMLLNENRRPDGRGFEEIRPISCEVGLLPRTHGTGLFTRGLTQVMTVATLGALGD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA +A+ P++P    F
Sbjct: 359 VQILDGIGSEEFKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAEKALEPLIPNEDNF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+  +D     +L+
Sbjct: 419 PYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSKEKVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED  G MDFKVAGT+ GITA+Q D KI G+S + +   L +A++ RL IL +++ 
Sbjct: 479 DIQGIEDFFGDMDFKVAGTEVGITAIQFDTKIHGLSNDCIKETLDKARKARLFILEKIND 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S  R +L ++ P+   M+I PD+IR+VIG GGKVI  I+ +TG K++I +DG + +  
Sbjct: 539 CISGPREELSKYAPKTYTMSIDPDKIRDVIGPGGKVINKIIAETGVKIDIKEDGKIFVMC 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 + A ++I  +T   +  +IY G+V K  +FGAFV     ++GLVHIS+L   RV
Sbjct: 599 DDSTCAKRALKIIDDLTREVKSGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  D+V  GD + VK+ D D++G+I LS K
Sbjct: 659 NKVEDIVSVGDEILVKVTDIDNQGRINLSRK 689


>gi|219685671|ref|ZP_03540485.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii Far04]
 gi|219672787|gb|EED29812.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii Far04]
          Length = 721

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/703 (41%), Positives = 441/703 (62%), Gaps = 32/703 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGEFIVNPSFEEIHNSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252
           +SED++L AI   H   K +  A  +  ++   KE + +   +   + +EE+   I  DL
Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLEIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 253

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           + +CF+  K  R K I  L+ K   +FSS  + +  NE      F+D + ++VR  +L+ 
Sbjct: 254 KDACFVKGKLNRDKAIALLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR    +RD+ A+V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G +
Sbjct: 314 KIRTDGRTPNEIRDVIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI 
Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD
Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+S+SR+ + ++ 
Sbjct: 493 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 552

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E I
Sbjct: 553 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 612

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSDV- 663
            SI   P+V +IY+G V K+  FGAF+     ++G +        S+  + R    +   
Sbjct: 613 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFGTGNRYS 672

Query: 664 -------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                              ++EG  + VK++D D  GKI L +
Sbjct: 673 RFGGGDNIRGNVGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEV 715


>gi|94993180|ref|YP_601279.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS2096]
 gi|123382250|sp|Q1J9S6|PNP_STRPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94546688|gb|ABF36735.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 701

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 276/686 (40%), Positives = 431/686 (62%), Gaps = 10/686 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+E+ YA GK
Sbjct: 3   GNPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAAGK 61

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +M 
Sbjct: 62  FPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAAMF 121

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVELE 191
            +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++A+ MVE  
Sbjct: 122 GSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKEAINMVESG 181

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQMIKE 250
           A +LSED++L+A++ GH   + +I    ++  +  KE   ++     + L+ ++      
Sbjct: 182 AKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQADIVAKYNA 241

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------EIVSVFEDIQAKVVR 304
            L+ +  + EK  R    + +K+ MV     E  + +E       ++  + E ++   VR
Sbjct: 242 QLQKAVQVEEKKAREAATEAVKE-MVKAEYEERYAEDENLATIMRDVAEILEQMEHAEVR 300

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL    + Q +D
Sbjct: 301 RLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIID 360

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP   +FPY +R
Sbjct: 361 GLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFPYAIR 420

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G ED
Sbjct: 421 LVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLED 480

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           H G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++E R 
Sbjct: 481 HFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEATIAEPRP 540

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I SS  A I 
Sbjct: 541 ELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIYSSDQAAIN 600

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R    SDV+
Sbjct: 601 RTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTTNVSDVL 660

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + G+ V VK++  D++G++  SMK +
Sbjct: 661 EVGEDVDVKVIKIDEKGRVDASMKAL 686


>gi|257096733|sp|A1R0N0|PNP_BORT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 717

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 297/709 (41%), Positives = 437/709 (61%), Gaps = 45/709 (6%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++GAVLATYG + VLATV    S ++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D + MVE  AN+
Sbjct: 134 AAVFLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILDIVVAGSLDGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMC-------AKEPIVIDSKDFSKLEEEMSQM 247
           +SE+V+L AI    ++    I+ I  L K          K P+  + + F + + E+   
Sbjct: 194 VSEEVLLAAI----DQAYEYIKQICNLQKEFILIVGEREKLPLAYEERVF-EFKAELKDF 248

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRT 305
           I  +L+ +CF+  K  R K I  +K+K   +FSS  +    NE       +D + ++VR 
Sbjct: 249 IYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSVSQVDEENETLFYKALDDFEQEIVRR 308

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +L+  +R DGR+   +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  DEQ +D 
Sbjct: 309 SILENNLRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDD 368

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   FPYT+R+
Sbjct: 369 IDGDKRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRV 427

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGLV +GD ++ILSDI G+EDH
Sbjct: 428 VSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSDILGEEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKVAGT +GIT  QMD+KI  +++ +M  AL QA+ GR+HIL+ M  V+S SR  
Sbjct: 488 LGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDSVISRSRDD 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +   +++ 
Sbjct: 548 ISVNAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDSLKMQK 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-- 663
           A+  I SI   P++ +IY+G V K+  FGAF+     ++G   +S     R  +  D+  
Sbjct: 608 AKARIESIVREPKIGEIYEGVVKKINSFGAFIELTPTKEGF--LSNRPKSRDDRYGDMRH 665

Query: 664 -------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
                                    ++EG  V V++ D D  GKI+L +
Sbjct: 666 SRYGSGRHSRYGRDSRNTFAMRPPRLEEGQMVKVRISDIDKFGKIELEL 714


>gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7425]
 gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425]
          Length = 715

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/694 (42%), Positives = 432/694 (62%), Gaps = 18/694 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +I + GR + +  GR A Q+ G V+   G+T VL T     + ++G DF PL V+Y+ER 
Sbjct: 7   KISFDGRDIHITIGRFAPQAGGTVMIRSGDTAVLVTATR-AAAREGIDFLPLLVDYEERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+LRRE RP E   LISR+IDR +RPLF    +++ QV+   +  D +  P 
Sbjct: 66  YAAGRIPGGFLRREGRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVPPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V+++  AS A++L+ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V+
Sbjct: 126 VLAVTGASVAVLLAQIPFNGPMAAVRVGLVGDDFIINPTYSEIEAGDLDLVVAGSPAGVV 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLE 241
           MVE  ANQL E  V++AI FG+   + +I A  +L       +  ++P   D    + + 
Sbjct: 186 MVEAGANQLPEQDVIEAIDFGYEAVRDLIRAQQELLTELGIALVQQDPPPRDPTLENFIR 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS 293
           E     +KE L  + F  +K VR   +D++K  +                ++ +   + +
Sbjct: 246 ERAEAPVKEIL--ARFEKDKNVRDAALDEVKAAIEQAIKELEETDPVRVAAALDAKALSN 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
            F+++   ++R  +++  VR+DGR  + VR IS  VG+L +R HGS+LF RG TQ +  V
Sbjct: 304 TFKEVTKTLMRRQVIEGNVRVDGRKLDEVRPISCLVGVLPRRVHGSALFNRGLTQVLSAV 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L   +   ++ HYNF P + GE   M +P RREIGHG LA RA+ PV
Sbjct: 364 TLGTPGDAQELDDLHPDESKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERALVPV 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   QFPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+GD+
Sbjct: 424 LPPQDQFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLTKPVSGAAMGLIKEGDE 483

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A+QQAK  R+HIL
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLQVVAEAIQQAKPARMHIL 543

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M + LS+ R +   F PR+  + I P+ I  VIG GGK ++GI E+TGAK++I+D G 
Sbjct: 544 EKMLETLSQPRQETSPFAPRLVNLKIDPELIGLVIGPGGKTVKGITEETGAKIDIEDSGM 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I++S   + + AR +I  +T       +Y G+V +++  GAFV F   ++G++HISQL
Sbjct: 604 ITISASDEDKAKRARSIIMGMTRKLSAGDVYVGKVTRIIPIGAFVEFLPGKEGMIHISQL 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV K  D V  GD V VK+ + D RG+I L+
Sbjct: 664 ADYRVNKVEDEVSVGDEVIVKVREIDGRGRINLT 697


>gi|224534158|ref|ZP_03674738.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
           A14S]
 gi|224514583|gb|EEF84897.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
           A14S]
          Length = 724

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/706 (41%), Positives = 441/706 (62%), Gaps = 35/706 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG IA+Q++G+VLATYG + VLATV    + ++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFIAKQANGSVLATYGGSSVLATVCCSSNAREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252
           +SED++L AI   H   K +  A  +   +   KE + +   +   + +EE+   +  DL
Sbjct: 194 VSEDILLSAIDSAHEYIKQICNAQKEFLDVVGEKEKLPLAFEEKIFEFKEELRDFVYADL 253

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           + +CF+  K  R K I  L+ K   +FSS  + +  NE      F+D + ++VR  +L+ 
Sbjct: 254 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDTNESLFHKAFDDFEKEIVRNSILND 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G +
Sbjct: 314 KIRTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI 
Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD
Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT++GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ ++S SR+ + ++ 
Sbjct: 493 FKVAGTENGITGFQMDIKIENVTKHLMRDALEQARIGRIHILSIMNSIISNSRVGISKYA 552

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E I
Sbjct: 553 PKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKEKI 612

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTERVAKTSD-- 662
            SI   P+V +IY+G V K+  FGAF+     ++G +        S+  + R    S+  
Sbjct: 613 ESIVREPKVGEIYEGVVKKINSFGAFIELTPTKEGFLSTRLRSRDSKYGSGRFGNNSNRY 672

Query: 663 ---------------------VVKEGDTVWVKLLDFDDRGKIKLSM 687
                                 ++EG  + V+++D D  GKI L +
Sbjct: 673 SRFGGAGGDNIRGNTGLIRPPKLEEGQQIKVRIVDIDKFGKIDLEI 718


>gi|167750806|ref|ZP_02422933.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
 gi|167656241|gb|EDS00371.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
          Length = 705

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 432/693 (62%), Gaps = 6/693 (0%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + T +  +AGR L +ETG++   ++G+    YGETVV+  V      ++G DFFPL
Sbjct: 1   MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+ YAVGKIPGGYL+RE RP+E  IL SR++DR +RPLF K  +N+  +++ V+ 
Sbjct: 61  AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D E+ P +++M+ AS A+ +S +P+ GP+ G  V  ++G+ VL P  ++   S L L V
Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPDAEQRAKSDLQLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237
           + ++  V+M+E  AN++ +D +L AI+ GH E  K +I  I ++     K      S + 
Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240

Query: 238 SK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L E +     E ++ +    +K VR +++  +K  + + F  ++       I     
Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG 
Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D +   +   +M HYNF   + GE      P RREIGHG LA+RA+ PV+P  
Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A++CGS+L+LMDAGVPI  PVAGI+ GL+ +GD ++ +
Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
            DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A  +  + R +IL+E M
Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R  + ++ P++    +P D+IR VIG GGKVI+ +      K++ID++G V I
Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
               L + +    MI++IT  PEV  IYKG+VV++M+FGAFV     +DG+VHIS+L   
Sbjct: 600 CGQDLEKAQNCIAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+L+ D++GKI+LS K
Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRK 692


>gi|187471096|sp|Q65ZW8|PNP_BORGA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 721

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/703 (41%), Positives = 440/703 (62%), Gaps = 32/703 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252
           +SED++L AI   H   K +  A  +   +   KE + +   +   + +EE+   I  DL
Sbjct: 194 VSEDILLSAIDGAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 253

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           + +CF+  K  R K I  L+ K   +FSS  + +  NE      F+D + ++VR  +L+ 
Sbjct: 254 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G +
Sbjct: 314 KIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI 
Sbjct: 374 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 432

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD
Sbjct: 433 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 492

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+S+SR+ + ++ 
Sbjct: 493 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 552

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E I
Sbjct: 553 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 612

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--------------- 655
            SI   P+V +IY+G V K+  FGAF+     ++G +     S +               
Sbjct: 613 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYGSGRFGTGNRYP 672

Query: 656 RVAKTSDV-----------VKEGDTVWVKLLDFDDRGKIKLSM 687
           R     ++           ++EG  + VK++D D  GKI L +
Sbjct: 673 RFGGGDNIRGNVGLVRPPKLEEGQQIKVKIIDIDKFGKIDLEV 715


>gi|332295429|ref|YP_004437352.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178532|gb|AEE14221.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
           narugense DSM 14796]
          Length = 721

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/709 (41%), Positives = 449/709 (63%), Gaps = 22/709 (3%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +VH++  E A G  + +ETG +A+Q++G+V    G+T+V +     +  +   DF PL
Sbjct: 1   MNEVHSITKEVAEGIVINIETGLLAKQANGSVTVRSGDTIVFSAATMSKEARSDIDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V++ E+ YA GK PGG+ +RE RP+E  IL SR+IDRSIRPLF K  +N+  +    + 
Sbjct: 61  VVDFDEKMYAAGKFPGGFFKREGRPSERAILYSRIIDRSIRPLFPKGLRNDVCISSFPLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D +    V+S++A+SAAL +S +PF+GPV   +V  I+ +++LNP +D+ ++  +D+ +
Sbjct: 121 IDNDFPVDVLSIIASSAALCISDIPFDGPVGAVRVGEIDKKFILNPTIDQIEKSDIDIVI 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
            G +D +LM+E   N++ ED +++ I    N   P I  I  + K      +V  +K   
Sbjct: 181 VGKEDNILMIEGSFNEIPEDKIIEII----NYALPAITKICDIQKELIS--LVKPTKSLV 234

Query: 239 KLEEEMSQMIKE-DLRVSCFIPEKY-VRCKQ-IDDLKKKM--------VSYFSSEHSSWN 287
            L+E    +    D  ++  I +K+ ++ KQ  ++L+K++           F SE    N
Sbjct: 235 YLQEPTEDITSSLDSILTDNITDKFPLKTKQDFENLEKELKDEILSVLSDRFGSEFVEAN 294

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              I   F++   K++R  ++  K R+DGR  + +R IS QVGLL R HGS+LF RG TQ
Sbjct: 295 ILLINQAFQNKLKKIIRNYVIKNKKRVDGRSLDEIRPISIQVGLLPRAHGSALFTRGQTQ 354

Query: 348 AIVVVTLGTREDEQYVDSL---SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           A+ + TLGT+ED Q +D+L   S   R  +M HYNF   + GE      P RREIGHG L
Sbjct: 355 ALSIATLGTQEDSQIIDTLYQSSNEIRKRYMHHYNFPGFSVGEARPSRGPGRREIGHGAL 414

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP+ + FPYT+R+VSEI ES+GSSSMA+ CGSSL+LMDAGVPISK V GIAM
Sbjct: 415 AEKALLPVLPKESDFPYTIRVVSEILESNGSSSMASACGSSLSLMDAGVPISKHVGGIAM 474

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GL+ + ++ IILSDI+G ED +G MDFKV GT  G++A+Q+D+K+ GI  + +  A+++A
Sbjct: 475 GLIYENEEIIILSDITGLEDAIGDMDFKVTGTIDGVSALQLDVKVPGIPIDALSKAIKKA 534

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
             GR  I+ +M++ +S  R  L  + PR+E++ I P++I +VIG GGK+I+ I+E+TG+K
Sbjct: 535 YEGRKSIIEKMNQAISHPREMLSNYAPRIEMIQINPEKISDVIGQGGKIIKKIIEETGSK 594

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I+ DG + IAS+S   +    E+I++IT      ++Y G+V K+ +FGA V     ++
Sbjct: 595 ISIEQDGKIYIASTSKEGLNKTIEIIQNITKPIVPGQVYIGKVTKIFNFGALVEISPGKE 654

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GLVHIS+LS  RV    DV+K GD V VK+LD +  GKI LS+K + +N
Sbjct: 655 GLVHISELSKTRVKNVEDVLKLGDEVTVKVLDLESNGKINLSIKALSEN 703


>gi|254519178|ref|ZP_05131234.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
           7_2_43FAA]
 gi|226912927|gb|EEH98128.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
           7_2_43FAA]
          Length = 704

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/681 (42%), Positives = 436/681 (64%), Gaps = 5/681 (0%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           AGR LKLE G+I   S+ A   +YG+TV+L  V      ++G DFFPL+V Y+ER Y+VG
Sbjct: 10  AGRELKLEFGKIGMLSNLAAFISYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVG 69

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP+EN IL  R +DR +RPLF K Y+N+ QV+  V+  + ++ P ++++
Sbjct: 70  KIPGGFIKREGRPSENAILFGRAVDRPLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAI 129

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
            AAS +L LS +PF  PV   QV  ING ++LNP   E ++  L L V  T + V+M+E 
Sbjct: 130 NAASLSLCLSSIPFTTPVAAVQVGLINGNFILNPTSKEREESELQLTVCATSERVMMIEA 189

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIK 249
              ++ EDV+L AI FG + C+ +I+   +  +   KE +V +    SK LE E+ +   
Sbjct: 190 GGQEIPEDVMLAAIKFGFDSCQDIIKFQEEAMQRFGKEKMVPELYKPSKELEIEIKEFAG 249

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
             ++ + +I +K  R   +D++ +K+ + F  ++   N G+I  +  ++Q +VVR ++L+
Sbjct: 250 AMIKEAMWITDKDERNSAMDEVNEKVYAEFEEKYPE-NVGDIKEIIYNLQKEVVRDMLLN 308

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R D R  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q +D +   
Sbjct: 309 HHRRPDERAFDQVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGAVGDIQIIDGIGEE 368

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +FPYT+R+VSE+
Sbjct: 369 ESKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEEFPYTIRLVSEV 428

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDEDHLG 487
             S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+   D     +L+DI G ED   
Sbjct: 429 LSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLTREEVLTDIQGIEDFFA 488

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  GIT++Q+D KI G+S  ++  A+  A++ RLHIL+++S+ +   R ++ 
Sbjct: 489 DMDFKVAGTVEGITSIQVDTKIKGLSFKVIEDAIMGARKARLHILDKISECIPGPRGEVS 548

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            + P+  I++I P++IR+VIG GGKVI  I+E+TG K++I +DGTV ++S+    +  A 
Sbjct: 549 TYAPKTSIISIDPEKIRDVIGAGGKVINKIIEETGVKIDIKEDGTVFVSSTDHDGVNKAI 608

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +I  +T   +V ++Y G+V K+  FGAFV     ++GL HIS+L   RV K  DVV  G
Sbjct: 609 SIIEGLTKEVKVGEVYLGKVTKIATFGAFVEILPNKEGLCHISKLDKARVNKVEDVVSVG 668

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
           D + VK+ + D++G++ LS K
Sbjct: 669 DEILVKVTEIDNQGRVNLSRK 689


>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 716

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 291/698 (41%), Positives = 427/698 (61%), Gaps = 35/698 (5%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E   AGRP K+E G++   S+ + +  YGET VL  VV     ++G DFFPL V Y+E+ 
Sbjct: 19  ETMLAGRPFKVEMGKMCGLSNASAMIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKL 78

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  D + SP 
Sbjct: 79  YAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCSPE 138

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++ + S L L V+ T D ++
Sbjct: 139 IAGMIGASLVTAVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVAATMDKIV 198

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ ED +L+AI   H E K  IE I+++     K  I     DF        Q
Sbjct: 199 MIEAGANEVDEDTMLNAIKAAHVEIKKTIEFINRIVAERGKPKI-----DF--------Q 245

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHSSWNEGEI 291
           ++  D+ V   I  KY     +DD K  M               +   + E+      ++
Sbjct: 246 VVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYPDLTAADL 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V   +Q  VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG TQ +  
Sbjct: 301 DLVSYKMQKFVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTT 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG  +D Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG LA RA+ P
Sbjct: 361 CTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVP 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPYT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +GD
Sbjct: 421 VLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGD 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            ++ + DI G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ ++GRL+I
Sbjct: 481 RWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYI 540

Query: 532 LNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L+E+ K V++E R +L  + P++  M IP D+I++VIG GGKVI+ I      K+++ +D
Sbjct: 541 LDEIIKPVIAEPRHELSRYAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQED 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V +++    + + A   I++I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS
Sbjct: 601 GHVFVSAVDQEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHIS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +L T+RV +  DVV  GD + VK+ D D +G+I LS +
Sbjct: 661 KLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698


>gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
 gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
          Length = 718

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 297/694 (42%), Positives = 433/694 (62%), Gaps = 19/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T    +  ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSKG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q+I   +  D    P V
Sbjct: 67  AAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V+M
Sbjct: 127 LAVTGASIATLMAQIPFNGPMAAVRVGLVGDDFIINPTYAETENGDLDLIVAGSPHGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A   L      K+  + P   D    + + +
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIQAQQDLLAEMGLKVVQEAPPEEDPTLSNYIRD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294
             S  IK+ L  S F   K  R + +D +K+++ S  +           ++ N   + + 
Sbjct: 247 RASDEIKKIL--SQFEYTKAQRDEALDVVKEQVASAINELPEENEVRAAATANSKALGNT 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+DI    +R  ++D  VR+DGR  + VR +S QVG+L +R HGS LF RG TQ +   T
Sbjct: 305 FKDITKHFMRRQIVDDNVRVDGRKLDEVRPVSCQVGVLPKRVHGSGLFNRGLTQVLSTCT 364

Query: 354 LGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           LGT  D Q + D L   Q   ++ HYNF P + GE   M  P RREIGHG LA RA+ PV
Sbjct: 365 LGTPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPMRFPGRREIGHGALAERALVPV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI KPV+G AMGL+K+GD+
Sbjct: 425 LPSKEAFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPILKPVSGAAMGLIKEGDE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A+ QAK  RLHIL
Sbjct: 485 VRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIAQAVHQAKSARLHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M + + E R++   + PR+  + I  D I  VIG GGK I+GI E+TGAK++I+DDGT
Sbjct: 545 DKMLQTIQEPRVETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIEDDGT 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I++   +  + AR +I+ +T       +Y G+V +++  GAFV F   ++G++HISQL
Sbjct: 605 VTISAVDESRAKKARNIIQGMTRKLHEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQL 664

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV K  D V  GD V VK+ + D++G+I L+
Sbjct: 665 ADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLT 698


>gi|203288233|ref|YP_002223248.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
 gi|226702624|sp|B5RQE3|PNP_BORRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|201085453|gb|ACH95027.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
          Length = 717

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/703 (41%), Positives = 441/703 (62%), Gaps = 33/703 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLDIVVAGSLDGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251
           +SE+++LDAI   +   K + +   +   +     K P+  + K F + ++++  +I  +
Sbjct: 194 VSEEILLDAIDKAYTYIKQICDLQKEFIYLIGEREKLPLAYEEKVF-EFKDDLRSLIYFE 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  +K+K   +FSS     +E EI+     +D + ++VR  +L+
Sbjct: 253 LKDACFVRGKLNRDKAIKLVKQKAYEHFSSLEQLNDENEILFYKACDDFEQEIVRKSILE 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNLRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ + D ++ILSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V+S SR  +   
Sbjct: 492 DFKVAGTKNGITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDSVISSSRGDISVN 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +   +++ A+  
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDNLKMQKAKAK 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------RVAKTSD 662
           I SI   P+V +IY G V K+  FGAF+     ++G +     S +       R ++ S+
Sbjct: 612 IESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRYGSDIRHSRYSN 671

Query: 663 ------------------VVKEGDTVWVKLLDFDDRGKIKLSM 687
                              ++EG  V V++ D D  GKI+L +
Sbjct: 672 RHSRYGRDNRSSFSMRFPRLEEGQIVKVRISDIDKFGKIELEL 714


>gi|51599057|ref|YP_073245.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii PBi]
 gi|51573628|gb|AAU07653.1| polyribonucleotide nucleotidyltransferase [Borrelia garinii PBi]
          Length = 715

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/703 (41%), Positives = 440/703 (62%), Gaps = 32/703 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ YA GKIPG
Sbjct: 8   LVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYYAAGKIPG 67

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +V M AA 
Sbjct: 68  GFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDIVGMNAAF 127

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+NG++++NP  +E   S LD+ V+G+ + + MVE  AN+
Sbjct: 128 TAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITMVEGGANE 187

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPI-VIDSKDFSKLEEEMSQMIKEDL 252
           +SED++L AI   H   K +  A  +   +   KE + +   +   + +EE+   I  DL
Sbjct: 188 VSEDILLSAIDGAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELKDFIYTDL 247

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           + +CF+  K  R K I  L+ K   +FSS  + +  NE      F+D + ++VR  +L+ 
Sbjct: 248 KEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIVRNSILND 307

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G +
Sbjct: 308 KIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDK 367

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+R+VSEI 
Sbjct: 368 RLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMVPGKNDFPYTIRVVSEIL 426

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+EDHLG MD
Sbjct: 427 ESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMD 486

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+S+SR+ + ++ 
Sbjct: 487 FKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSRVGISKYA 546

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +++ A+E I
Sbjct: 547 PKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQKAKERI 606

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--------------- 655
            SI   P+V +IY+G V K+  FGAF+     ++G +     S +               
Sbjct: 607 ESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYGSGRFGTGNRYP 666

Query: 656 RVAKTSDV-----------VKEGDTVWVKLLDFDDRGKIKLSM 687
           R     ++           ++EG  + VK++D D  GKI L +
Sbjct: 667 RFGGGDNIRGNVGLVRPPKLEEGQQIKVKIIDIDKFGKIDLEV 709


>gi|203284701|ref|YP_002222441.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
 gi|226702622|sp|B5RMZ9|PNP_BORDL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|201084144|gb|ACH93735.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
          Length = 717

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/703 (41%), Positives = 441/703 (62%), Gaps = 33/703 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y E+ YA GKIPG
Sbjct: 14  LILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  + P +V M AA 
Sbjct: 74  GFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMNPPDIVGMNAAF 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            A+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D + MVE  AN+
Sbjct: 134 TAVFLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLDIVVAGSLDGITMVEGGANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMIKED 251
           +SE+++LDAI   +   K + +   +   +     K P+  + K F + ++++  +I  +
Sbjct: 194 VSEEILLDAIDKAYAYIKQICDLQKEFIYLIGEREKLPLAYEEKVF-EFKDDLRSLIYSE 252

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDIQAKVVRTVMLD 309
           L+ +CF+  K  R K I  +K+K   +FSS     +E EI+     +D + ++VR  +L+
Sbjct: 253 LKDACFVRGKLNRDKAIKLVKQKAYEHFSSLEQINDENEILFYKACDDFEQEIVRKSILE 312

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R DGR    +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  DEQ +D + G 
Sbjct: 313 DNLRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGD 372

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   FPYT+R+VSE+
Sbjct: 373 KRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRSLEAMLPKKDDFPYTIRVVSEV 431

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ + D ++ILSDI G+EDHLG M
Sbjct: 432 LESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSDILGEEDHLGDM 491

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V+S SR  +   
Sbjct: 492 DFKVAGTKNGITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDSVISSSRGDISVN 551

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +   +++ A+  
Sbjct: 552 APKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTDNLKMQKAKAK 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-------RVAKTSD 662
           I SI   P+V +IY G V K+  FGAF+     ++G +     S +       R ++ S+
Sbjct: 612 IESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRYGSDIRHSRYSN 671

Query: 663 ------------------VVKEGDTVWVKLLDFDDRGKIKLSM 687
                              ++EG  V V++ D D  GKI+L +
Sbjct: 672 RNSRYGRDNRSSFSMRFPRLEEGQIVKVRISDIDKFGKIELEL 714


>gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 707

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/683 (42%), Positives = 430/683 (62%), Gaps = 11/683 (1%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            ETG++A+ +DG+V  +YGET VL T V    LK+ QDF PL V Y+E+  A G+ PGGY
Sbjct: 16  FETGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFPGGY 75

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            R+E RPT+ EIL SRMIDR +RPLF K Y  ETQ++  ++  D ++ P V+++  ASAA
Sbjct: 76  FRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQILGTLLSADGQNDPDVMAINGASAA 135

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLS 196
           LM+S +PF GPV   ++  I+G++++NP   E + S +DL   G++   LM+E  A +  
Sbjct: 136 LMVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYVGSEHYPLMIEGSAREFP 195

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRV 254
           E+  + A+ F H   + VI A  +LA+   K     V+  ++ + +   ++++    L+ 
Sbjct: 196 EEEFVKALEFAHQHVQEVIAAQKELAEKVGKPKRSCVLFEENLA-ITNRLAELYSSQLQD 254

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
           + +   K  R K++  LK+++ +    E  +    EI S ++ +Q  + RT +L+ K R 
Sbjct: 255 ALYTSSKTERQKKLAKLKEELTAKILEEFPTATPREITSSYDSLQKTIFRTNVLETKRRC 314

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRND 373
           DGR  E +R I+ +  ++ R+HGSSLF RG+TQA+ + TL +  + Q +D+  G  Q   
Sbjct: 315 DGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQSKR 374

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F++HY F P + GEV R+   SRREIGHG LA R++ PV+P    FPY +R+ SEI ES+
Sbjct: 375 FLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDFPYAIRVSSEILESN 434

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK------DGDDFIILSDISGDEDHLG 487
           GS+SMATVCG SLALMDAGVP+   VAGI++GLVK      D   + +L+DI G EDH G
Sbjct: 435 GSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEEDFDWSRYCLLTDILGLEDHYG 494

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFK+AGT  GIT  Q+D+K+ GI  ++M  A+ Q+++ R+ IL+ M KV++  R ++ 
Sbjct: 495 DMDFKIAGTRKGITGFQLDLKLRGIPLDVMAKAIFQSQKARMVILDCMDKVINAPRAEIS 554

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           +  PR+E + I PD+I  +IG GGK I+ I  ++GA++ I+DDGTV I SSS   +EAAR
Sbjct: 555 KHAPRIEKIKIHPDKIGLLIGPGGKTIKKISAESGAEITIEDDGTVMIYSSSADSLEAAR 614

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EMI  +     V  IY+ +VV V DFG F+   G  +GLVHIS+LS   V +   VV+ G
Sbjct: 615 EMIEDMVGEVTVGGIYRSKVVSVKDFGCFIEIKGKGEGLVHISELSDTPVRRVDQVVRVG 674

Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690
           + +WVK +  D++G+ K S K  
Sbjct: 675 EEIWVKCIGVDEKGRYKFSRKAA 697


>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
 gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
          Length = 708

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 301/697 (43%), Positives = 447/697 (64%), Gaps = 13/697 (1%)

Query: 10  EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           EW     GR L ++ G++A+QS G+VL  +G+TVVLAT        +G DF PLTV +QE
Sbjct: 3   EWRRNILGRELVVQYGKVAKQSSGSVLVRFGDTVVLATANISDKAVEGVDFVPLTVEFQE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    
Sbjct: 63  RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSIP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P VV + AAS AL +S +PFEG V G +V Y +GQ++  P   D ++G +D+ V+GT+DA
Sbjct: 123 PDVVGIFAASLALNVSKIPFEGVVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243
           V MVE EA +++E+ ++ A+ F H+  K +++   ++      E I V++     +L E 
Sbjct: 183 VTMVEGEAKEVTEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEELVET 242

Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI---VSVF-EDI 298
            ++++ +E+L     +  K  R   + + ++++++      S  +  EI   VS F ED 
Sbjct: 243 FNELLNREELERRILVKVKKEREAALKEYEEQLLNQIVERLSVTDPEEIKPFVSEFYEDA 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   
Sbjct: 303 VKKTMRRLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +
Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNILPPEEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  IIL+D
Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL+ M + 
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYET 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597
           +S  R  L ++ P +++  + P+++ +VIG GG+VI+ I++    KV IDD+ G VK+  
Sbjct: 543 ISAPRPHLSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS   ++ A E+IR I    EV ++ +G+V ++  +G F+     + GL+H S++  E +
Sbjct: 603 SSEENVDKAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +    VK GDT+ V++++ DD G+++       +NT
Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQFKRVTEGENT 698


>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
          Length = 713

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/705 (41%), Positives = 431/705 (61%), Gaps = 36/705 (5%)

Query: 2   FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           FD   V E   AGRP K+E G++   S+ + L  YGET V+  VV     ++G DFFPL 
Sbjct: 12  FDNFKVYETMLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLN 71

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  
Sbjct: 72  VEYEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSL 131

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++ + S L L V+
Sbjct: 132 DPDCSPEIAGMIGASLVTAVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVA 191

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T D ++M+E  AN++ ED +L AI   H E K +IE I+K+     K  I     DF  
Sbjct: 192 ATMDKIVMIEAGANEVDEDTMLTAIKTAHVEIKKIIEFINKIVAERGKPKI-----DF-- 244

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHS 284
                 Q++  D+ V   I  KY     +DD K  M               +   + E+ 
Sbjct: 245 ------QVVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYP 293

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             +  ++  V   +Q  VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG
Sbjct: 294 DLSAADLDLVSYKMQKFVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG 353

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
            TQ +   TLG  +D Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG L
Sbjct: 354 QTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGAL 413

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPYT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ 
Sbjct: 414 AERALVPVLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISC 473

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GL+ +G+ ++ + DI G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ 
Sbjct: 474 GLITEGERWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKC 533

Query: 525 KRGRLHILNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           ++GRL+IL+E+ K V++E R +L  + P++  M IP D+I++VIG GGKVI+ I      
Sbjct: 534 RKGRLYILDEIIKPVIAEPRQELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNC 593

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+++ +DG V +++    + + A   I++I + PE+  IYKG+V ++M+FGAFV     +
Sbjct: 594 KIDVQEDGHVFVSAVDQEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGK 653

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +GLVHIS+L T+RV +  DVV  GD + VK+ D D +G+I LS +
Sbjct: 654 EGLVHISKLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698


>gi|291557792|emb|CBL34909.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
           V10Sc8a]
          Length = 705

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 431/693 (62%), Gaps = 6/693 (0%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + T +  +AGR L +ETG++   ++G+    YGETVV+  V      ++G DFFPL
Sbjct: 1   MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+ YAVGKIPGGYL+RE RP+E  IL SR++DR +RPLF K  +N+  +++ V+ 
Sbjct: 61  AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D E+ P +++M+ AS A+ +S +P+ GP+ G  V  ++G+ VL P   +   S L L V
Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPDAKQRAKSDLQLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237
           + ++  V+M+E  AN++ +D +L AI+ GH E  K +I  I ++     K      S + 
Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240

Query: 238 SK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L E +     E ++ +    +K VR +++  +K  + + F  ++       I     
Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG 
Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D +   +   +M HYNF   + GE      P RREIGHG LA+RA+ PV+P  
Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A++CGS+L+LMDAGVPI  PVAGI+ GL+ +GD ++ +
Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
            DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A  +  + R +IL+E M
Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R  + ++ P++    +P D+IR VIG GGKVI+ +      K++ID++G V I
Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
               L + +    MI++IT  PEV  IYKG+VV++M+FGAFV     +DG+VHIS+L   
Sbjct: 600 CGQDLEKAQNCVAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV K  DVV  GD + VK+L+ D++GKI+LS K
Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRK 692


>gi|268611199|ref|ZP_06144926.1| polynucleotide phosphorylase/polyadenylase [Ruminococcus
           flavefaciens FD-1]
          Length = 704

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/702 (41%), Positives = 431/702 (61%), Gaps = 24/702 (3%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + T E  +AGRPL +ETG+    S+G+    YGETVV+A V      ++G DFFPL
Sbjct: 1   MFENYRTFETTYAGRPLVVETGKTCGLSNGSCWVRYGETVVMANVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+Y+ER Y+VGKIPG + +RE +PTE  IL SR +DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDYEERLYSVGKIPGSFTKREGKPTEKAILTSRCVDRPIRPLFPKDMRNDVSVVMTVLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + ++SP +  M+A S A+ +S +P+ GP+ G  V  ++G+ VLNP L++  +  L L V
Sbjct: 121 VEPDNSPEIAGMIATSIAISISDIPWNGPISGINVGLVDGEIVLNPTLEQRAKTDLVLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVID 233
           +GT + ++M+E  AN++ ED +L+AI+ GH E K ++  I  +     K     E + +D
Sbjct: 181 AGTAEKIVMIEAGANEVPEDTMLEAIMKGHEEIKKMVAFIKDIQSQIGKPKFAFESMEVD 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ----IDDLKKKMVSYFSSEHSSWNEG 289
              F  +EE  ++ +K  L  +    +K VR ++    +DD+  K    +  + +  +E 
Sbjct: 241 HDMFDAIEEFAAERVKFALDTN----DKNVRDERLAPIVDDIHAKFDEQYPEQIAMIDE- 295

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
                   +Q K+VR  + + K R+DGR  + +R ++A+VGLL R HGS LF RG TQ +
Sbjct: 296 ----CIYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGLLPRVHGSGLFTRGQTQVL 350

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLG   D Q +D L   +   +M  YNF   + GE      P RREIGHG LA RA+
Sbjct: 351 TIATLGPVSDAQRIDGLDEEESKRYMHQYNFPSYSVGETKPSRGPGRREIGHGALAERAL 410

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-- 467
            PV+P   +FPY LR+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+  
Sbjct: 411 APVIPSVDEFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITK 470

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D D+F+ + DI G ED  G MDFKV GT  GITA+Q+D+K+ G++  I+  A ++ ++ 
Sbjct: 471 PDSDEFMTMVDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIKEAFEKTRKA 530

Query: 528 RLHILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           RL+IL+E M K + E R  + ++ P++    IP D+IR VIG GGK I+ I      K++
Sbjct: 531 RLYILDEVMLKAIPEPRKTVNKYAPKMLQTKIPADKIREVIGSGGKTIQKISADCDVKID 590

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I DDG V I+         A +++ +I + PEV  IY+G+VV++MDFGAFV      DGL
Sbjct: 591 ISDDGNVFISGIDAGNSNKALQIVETIANGPEVGAIYRGKVVRIMDFGAFVEIVPGVDGL 650

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           VHIS+L   RV K  D+V  GD + VK+ + D +G+I LS K
Sbjct: 651 VHISKLDKSRVEKVEDIVSIGDEIVVKVTEIDRQGRINLSRK 692


>gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 711

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/695 (42%), Positives = 442/695 (63%), Gaps = 28/695 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + LETG++A+Q+DG+V+   G T++LAT+V  +  KDG DF PLTV+Y+E+  A G+
Sbjct: 15  GREITLETGKLAKQADGSVVVKCGGTMLLATIVSSKEAKDGIDFLPLTVDYREKFAANGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           +PGG+L+RE RP++NE+L  R+IDR +RPLF K Y  E Q++I ++ +D       ++ +
Sbjct: 75  VPGGFLKREGRPSDNEVLTMRLIDRVLRPLFPKDYHAEIQLMIQMISYDENVEATSLTGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S LPF+GP+   +V  ING++V+NP   +  +  LD+ +  + D+V+MVE E
Sbjct: 135 AASAAIAVSDLPFDGPISEVRVGRINGEHVINPTPAQIGELELDMVIGASMDSVVMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE+ +++AI + H+  K  IEA  +LA    K       +++S   E  ++ ++E+
Sbjct: 195 MQEISEEEMVEAIKYAHDAIKVQIEAQLRLASHVEKAQT---KREYS--HETHNEEVREE 249

Query: 252 LRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSW---NEGEIVSVFEDI 298
           +  + +          +P K+ R       K  +  Y   +   W   N G   + F D+
Sbjct: 250 VMAATYDKVYEVAKSGLP-KHERSA---GFKAILNEYLEGKDEEWLSANTGFAKTYFHDV 305

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K +R ++L+   R+DGR +  VR I ++V  L   HGS++F RG+TQ++  VTLGT  
Sbjct: 306 EYKAMRDMVLNDGQRLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTSL 365

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D   +D  + T    F +HYNF P +TGE   +   SRREIGHG LA+RA++ ++    +
Sbjct: 366 DANRIDDATFTGEEKFYLHYNFPPFSTGEARPIRGVSRREIGHGNLAQRALYQMV--DPE 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            P+T+R+VS+I ES+GSSSMATVC  +LA+MDAGV + +PV+GIAMGL+ DG+ + +LSD
Sbjct: 424 NPFTIRVVSDILESNGSSSMATVCAGTLAMMDAGVKMVRPVSGIAMGLISDGEKYAVLSD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKV GT+ GITA QMD+K+ G+S  I+V AL+Q+  GRLHIL EM K 
Sbjct: 484 ILGDEDHLGDMDFKVTGTEKGITACQMDIKVKGLSYEILVKALKQSLEGRLHILGEMLKT 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKI 595
           + E+R +L    P++  + +  + I  +IG GGK I+GI   TG  V I   DD G V+I
Sbjct: 544 MPETRTELKPNAPKIYKLTVKKEFIGPIIGPGGKNIQGIQADTGTTVTISEVDDRGHVEI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +    A ++ A EMIR+I   PE+ ++Y+G V  V  +GAFV       GL+HIS++   
Sbjct: 604 SGKDAAMMDKALEMIRAIAFEPEIGEVYEGIVRGVQTYGAFVEIAPKVQGLLHISEIDWT 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R+    DV+KEGDTV VKLL+ D  GK+KLS KV+
Sbjct: 664 RIKNVEDVLKEGDTVKVKLLEVDKAGKMKLSRKVL 698


>gi|168187902|ref|ZP_02622537.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
           str. Eklund]
 gi|169294241|gb|EDS76374.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
           str. Eklund]
          Length = 705

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/689 (41%), Positives = 442/689 (64%), Gaps = 7/689 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V      K+G DFFPL++ YQ
Sbjct: 3   HIFETTVAGRTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  ++G++V+NP   + + S LDL V  T+D
Sbjct: 123 LPNILAMNGASLALCLSSIPFTTPVGTVSVGLVDGEFVINPTSKQREESILDLTVCATKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLE 241
            V+M+E    ++ EDV+ DAI+FG  ECK +     K+ +   K+   +++   D + +E
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIANFQQKVMEQYGKQKAELILHEID-ANIE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+ +   + ++ + +I +K +R + ID++K+K+   F+ ++   N  +I      +Q +
Sbjct: 242 KEVKEFAFDMVKEAMYITDKDLRNRAIDEVKEKVAEEFNEKYPD-NLADIGEAIYKMQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR ++L++K R DGR  + +R +S++V LL RTHGS LF RG TQ + V TLG+  + Q
Sbjct: 301 VVRNMILNEKRRPDGRSFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY
Sbjct: 361 VLDGIEEETLKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479
            +R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGLV  +D +   IL+DI
Sbjct: 421 AIRVVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLVTSEDLEKEEILTDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A++ RL IL  ++  +
Sbjct: 481 QGLEDFFGDMDFKVAGTEKGITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNCI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R ++ ++ P+V  M+I P +I++VIG GGK I  I+++TG K++I +DG+V + +  
Sbjct: 541 DKPREEVSKYAPKVFTMSINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGSVFVTAED 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A  MI   +   +  ++Y G+V K+ +FGAFV     ++GLVHIS+L  +RV K
Sbjct: 601 YESGKKALAMIDGYSREVKEGEVYLGKVTKIANFGAFVEILPGKEGLVHISKLDVKRVNK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             DVV  GD + VK+ + D  G++ LS K
Sbjct: 661 VEDVVSVGDEILVKVTEIDSMGRVNLSRK 689


>gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii
           ATCC 33406]
 gi|123058787|sp|Q11U61|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 717

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 297/691 (42%), Positives = 446/691 (64%), Gaps = 16/691 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DG+ +   G  ++LATVV  +  K G DF PL+V+YQE+  + GK
Sbjct: 18  GREIQIETGKLAKQADGSAVVKLGNAMILATVVSAKEAKPGVDFMPLSVDYQEKFASNGK 77

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+L+RESR ++ EILISR++DR++RPLF + +  +TQV I ++  D +  P  ++ +
Sbjct: 78  IPGGFLKRESRLSDYEILISRLVDRAMRPLFPEDFHADTQVAITLISADADVLPDALACL 137

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AA AA+ +S +PF GPV   +V  +NG++++NP+  + ++  L+L V+ + D V+MVE E
Sbjct: 138 AAQAAMSVSDIPFNGPVSEVRVISLNGEFIINPKPAQIEKAELELIVAASYDNVIMVEGE 197

Query: 192 ANQLSEDVVLDAIIFGHNECKP---VIEAISKLAKMCAKEPIVIDSKDF---SKLEEEMS 245
            +++SE+++L+AI   H+  +    V++ +   A    K     +  D+    K+ + + 
Sbjct: 198 MSEVSEELMLNAIKVAHDAIRTQCIVLKELESAAGKTEKRTYSHEVNDWDLKKKINDAVY 257

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           Q + E  ++      K  R +    +KK  +    ++H+  +   I   + D++   VR 
Sbjct: 258 QQVYEVAKLGN--ANKNTRAEGFKAVKKAYIESLPADHTE-DLTLIGKYYHDVEKDAVRN 314

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD++ R+DGR  E +R I ++VG L   HGS++F RG+TQ++  VT GTR DEQ +DS
Sbjct: 315 LILDERKRLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDS 374

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
              +  N  M+HYNF   +TGEV     P RRE+GHG LA RAI  V+P   + PYT+RI
Sbjct: 375 AMFSGNNKLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEIENPYTIRI 434

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDE 483
           VS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMGL+ D     + +LSDI GDE
Sbjct: 435 VSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDTKTGRWAVLSDILGDE 494

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT+ GITA QMD+K+ G+S +I+  ALQQA RGRLHIL+EM K L+  R
Sbjct: 495 DHLGDMDFKVTGTEKGITACQMDIKVDGLSYDILSQALQQANRGRLHILSEMKKTLATPR 554

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600
             L    PR+ ++ IP + I  VIG GGK+I+ I + +GA VNI   D+ G V I S   
Sbjct: 555 EDLKPHAPRMIMIQIPKELIGAVIGPGGKIIQEIQKTSGATVNIEEKDNAGWVSIFSKDK 614

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +++A   I+ I  +PEV ++Y+G+V  +  FGAFV F   +DGL+HIS++  ER+   
Sbjct: 615 TALDSALSQIKGIVTLPEVGEVYEGKVKSITAFGAFVEFLPGKDGLLHISEIKWERLDTM 674

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             V++ G+TV VKL++ D + GK +LS KV+
Sbjct: 675 EGVLEVGETVKVKLVEVDKKTGKYRLSRKVL 705


>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
 gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
          Length = 714

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/698 (41%), Positives = 428/698 (61%), Gaps = 35/698 (5%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E   AGRP K+E G++   S+ + L  YGET VL  VV     ++G DFFPL V Y+E+ 
Sbjct: 19  ETTLAGRPFKVEMGKMCGLSNASALIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKL 78

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  D + SP 
Sbjct: 79  YAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCSPE 138

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++ + S L L V+ T D ++
Sbjct: 139 IAGMIGASLVTAVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVAATMDKIV 198

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ ED +L+AI   H E K +I  I+ +     K  I     DF        Q
Sbjct: 199 MIEAGANEVDEDTMLNAIKAAHVEIKKIITFINGIVAERGKPKI-----DF--------Q 245

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHSSWNEGEI 291
           ++  D+ V   I  KY     +DD K  M               +   + E+   ++ ++
Sbjct: 246 VVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYPDLSDADL 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V   +Q  VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG TQ +  
Sbjct: 301 DLVSYKMQKYVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTT 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG  +D Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG LA RA+ P
Sbjct: 361 CTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVP 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPYT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +GD
Sbjct: 421 VLPSLEEFPYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGD 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            ++ + DI G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ ++GRL+I
Sbjct: 481 RWMTMLDIQGVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYI 540

Query: 532 LNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L+E+ K V+++ R +L  + P++  M IP D+I++VIG GGKVI+ I      K+++ +D
Sbjct: 541 LDEIIKPVIAQPREELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQED 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V +++    + + A   I++I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS
Sbjct: 601 GHVFVSAVDQEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHIS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +L T+RV +  DVV  GD + VK+ D D +G+I LS +
Sbjct: 661 KLDTKRVERVEDVVAVGDAIVVKVTDIDQQGRINLSRR 698


>gi|89898059|ref|YP_515169.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila felis
           Fe/C-56]
 gi|123483690|sp|Q255L4|PNP_CHLFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89331431|dbj|BAE81024.1| polyribonucleotide nucleotidyltransferase [Chlamydophila felis
           Fe/C-56]
          Length = 694

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/697 (42%), Positives = 425/697 (60%), Gaps = 20/697 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V +E  G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V
Sbjct: 3   FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCA-ATLEEPVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  ++GK  GG+++RE RPTE EIL SR+IDRS+RP        + Q++  V  +D
Sbjct: 61  DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
             + P  +++   SAAL +S +P    V G +V +IN  +V+NP + + D   ++L ++G
Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQINIVAGVRVGFINNTWVVNPTKAEMDVSRMELVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---------PIV 231
           T+ A+LM+E   +  +E+ V++AI FGH     + +AI    K   KE         P  
Sbjct: 181 TEKAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKAIEDWQKQIGKEKNTSAVVPLPEQ 240

Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
           + +   + +E + S +++        I EK         L+  +V     E+  +    I
Sbjct: 241 VQTAVNTLVEGKFSDLLQ--------IKEKKAFEAASKQLENDIVEKLQEENEIFTPLNI 292

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            + F+  ++  +R+++  + +R DGR   T+R IS     L RTHGS LF RG+TQ + V
Sbjct: 293 KTAFKQAKSDYMRSLIRKQGLRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTVAV 352

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG+    Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  
Sbjct: 353 CTLGSEAMAQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSH 412

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP  A+FPYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D D
Sbjct: 413 ALPDPAKFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDD 472

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              ILSDISG EDHLG MDFKVAG   GITA QMD+K+ GI+  IM  AL QAK GR +I
Sbjct: 473 HVTILSDISGLEDHLGDMDFKVAGNAEGITAFQMDIKVEGITPEIMQAALAQAKSGRQNI 532

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L  M   L+  +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D G
Sbjct: 533 LETMKATLASPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSG 592

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I++SS   IE A+ +I  +    EV KIY+G+V  ++ FGAFV     ++GL HIS+
Sbjct: 593 LVSISASSPQAIEKAKSIIEGLVGEVEVGKIYEGRVTSIVPFGAFVEILPGKEGLCHISE 652

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            S +R+    D VK+GD + VKLL  +++G+ KLS K
Sbjct: 653 FSKQRIENVGDFVKQGDILPVKLLSINEKGQYKLSHK 689


>gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
 gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
          Length = 708

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 302/706 (42%), Positives = 446/706 (63%), Gaps = 23/706 (3%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF++ T  +    GR + +ETG++ARQ+DGAV+   G+T++LATVV  +  K+G DF PL
Sbjct: 1   MFEITTQSVALPDGREITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+YQE+  + G+IPG + RRE R  ++EILISR++DR++RP+F   Y  +TQV+I ++ 
Sbjct: 61  SVDYQEKFASAGRIPGSFQRREGRLGDHEILISRLVDRALRPIFPDNYHADTQVMITLIS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D E  P  ++ +AAS+AL +S +PF GP+   +V  I+GQY +NP+  E ++ ++DL V
Sbjct: 121 ADPEVQPDALAALAASSALAVSDIPFNGPISEVRVAKIDGQYKINPKTAELERATIDLIV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDS 234
           + T+  + MVE E ++ SE  V++A+   H     +C+   E  +K+ K   +E      
Sbjct: 181 AATEKDICMVEGEMDECSEAEVVEALKVAHEAIKIQCQAQKELEAKVGKTVKRE------ 234

Query: 235 KDFSKLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
            +    +EE+   ++       +       P K  R +    ++ + ++ F  E +  N 
Sbjct: 235 YNHETHDEELRAAVRAATYDKIYEVARRQNPSKKGRSEGFKAVRDEYLASFP-EGAEVNV 293

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
           G I + F D++ +  R ++LD++ R+DGR  + +R ISA+ G L   HGS+LF RG+TQ+
Sbjct: 294 GLIKTYFHDLEWEASRRLVLDERTRLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQS 353

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DEQ VD       + F++HYNF   +TGEV       RREIGHG LA R+
Sbjct: 354 LTTVTLGTKTDEQIVDQTMFQGYSKFLLHYNFPGFSTGEVKPNRGAGRREIGHGNLAHRS 413

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  VLP   + PYT+RIVS+I ES+GSSSMATVC  ++ALMDAG+ I  PVAGIAMGL+ 
Sbjct: 414 LKKVLPPAEENPYTIRIVSDILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLIS 473

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           DGD + +LSDI GDEDHLG MDFKV GT+ GI A QMD+K+ G+S  ++  AL+QA+ GR
Sbjct: 474 DGDKYAVLSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKVDGLSYEVLAQALEQARVGR 533

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL EM K +S+ R  L    PR  ++ I  +QI  VIG GGKV++ I + +GA VNID
Sbjct: 534 LHILGEMKKGISDVRSDLKPHAPRAMVIKIDTNQIGAVIGPGGKVVQDIQKDSGAVVNID 593

Query: 589 DD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +    G V I ++S   ++ A   ++ I  VPEV + Y G+V  +  FGAFV F   +DG
Sbjct: 594 EHDNAGWVSIFATSKESMDKAVSRVKGIVAVPEVGETYVGKVKTIQPFGAFVEFMPGKDG 653

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           L+HIS++  ER+     V++ G+ V VKL+D D + GK +LS KV+
Sbjct: 654 LLHISEIKWERLETMDGVLQVGEEVTVKLIDVDKKTGKYRLSRKVL 699


>gi|168333339|ref|ZP_02691623.1| Polyribonucleotide nucleotidyltransferase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 698

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/696 (41%), Positives = 445/696 (63%), Gaps = 11/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T ++E AGR LK+E G++A  ++GA L TYGET +LAT V     K+G DFFPL+VNY
Sbjct: 2   VKTYKMELAGRELKVEIGKMAELANGAALVTYGETCILATAVASDKPKEGIDFFPLSVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA+GKIPGG+L+RE RP++  +L SR+IDR +RPLF K Y+N+  +   VM  + +
Sbjct: 62  EEKIYAIGKIPGGFLKREGRPSDKAVLTSRVIDRPLRPLFPKDYRNDVVITTTVMSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP + SM+AAS  L +S +PF GPV    V  ++G+ V+NP + + + S L L VS ++
Sbjct: 122 CSPEITSMIAASLVLDISEIPFNGPVGSVFVGLVDGEIVINPTMAQREKSQLALTVSSSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS---K 239
           D V+M+E  AN++SE+V+L+AI  GH   + +++ IS++   C K P   D + ++   +
Sbjct: 182 DKVMMIEAGANEISEEVMLEAIYKGHQANQEIVKFISEIRDDCGK-PKRYDYEKYTLPLE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           + + + +++ K  +  + F  +K  R  ++++L +++ +  + E        +   F   
Sbjct: 241 IYDRVCEIVGKPAMEGAIFTTDKLARGMRLEELLQEVKAVMAEEDMDAMP-YVEDAFYKY 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+VR  +L    R DGR  + +R + A+V L+ R HGS +F RG TQ + + TL    
Sbjct: 300 EKKIVRDSILKDHKRPDGRALDEMRILKAEVDLIPRVHGSGMFTRGQTQVLTITTLAPLS 359

Query: 359 DEQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        +M HYNF P + GE     +  RREIGHG LA RA+ PVLP   
Sbjct: 360 EAQIIDGLDELDVLKRYMHHYNFPPFSVGEAKPPRSVGRREIGHGALAERALIPVLPTEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFII 475
           +FPY +R+VSE+  S+GS+S A++CGS+LALM AGVPI  PVAGI++GLV  +  +DF++
Sbjct: 420 EFPYAMRLVSEVLSSNGSTSQASICGSTLALMAAGVPIKAPVAGISVGLVTGESTEDFVL 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV G+ +GITA+QMDMKI G++  I+  A +Q +  R +I++E 
Sbjct: 480 LTDIQGLEDFFGDMDFKVGGSKNGITAIQMDMKIDGLTYEIIKGAFEQTRIAREYIIDEI 539

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M K + ++R  L ++ P +  + + PD+I  +IG  GK I  I+E+TGAK++I+DDG + 
Sbjct: 540 MLKAIDKTRETLSKYAPCITQIKVNPDKISEIIGQKGKTINKIIEETGAKIDIEDDGRIA 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I ++  A  +   E+I  I    EV +++ G+VVK+++ GAFV     ++GLVHISQ++ 
Sbjct: 600 ICTNDEASAKRTIEIIERIAKXLEVGQVFLGKVVKIINIGAFVELAPGKEGLVHISQIAH 659

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            RV K  DV+K GD++ VK+++ D +G++ LS K +
Sbjct: 660 NRVEKVEDVLKVGDSIEVKIIEIDKQGRVNLSRKAL 695


>gi|139439612|ref|ZP_01773025.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
           25986]
 gi|133774953|gb|EBA38773.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
           25986]
          Length = 748

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/687 (42%), Positives = 433/687 (63%), Gaps = 14/687 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E  G+    E+G +A+Q+ GA L   G+T +L TVV  +  K+  DFFPLTV++ E+ Y
Sbjct: 8   FELYGKTYTFESGELAKQATGACLVKQGDTTMLDTVVVSKERKN-YDFFPLTVDFNEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGGYL+RE RP+E   L +RMIDR IRP F + ++NE  ++   +  D  +   V
Sbjct: 67  AAGRIPGGYLKREGRPSEKATLTARMIDRPIRPSFPEGFRNEVHIVATSLVADQVNPFDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
           ++++ AS A+ L G+PFEGP+   ++  +   G++++NP  +E + S LDL + G+ D +
Sbjct: 127 INVMGASLAMTLGGVPFEGPLACVRIGRNVETGEFIVNPTYEERENSDLDLELGGSADFI 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
            MVE  A ++SED +L A+ FG       C+  +E +++  ++     IV       +  
Sbjct: 187 SMVEAGAEEISEDDMLAAMKFGQEALAAFCQAQVEFVAEWEQVNGA--IVKKEYPLDQPV 244

Query: 242 EEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           EE+ + I    +++  +    +K  R  +++ LK+ + + F+ E  +  E EI    + +
Sbjct: 245 EEVQERIFAHYDEMAAALRDADKLSRIGKVEALKESIRAEFTDEEQAAWEREIPVALKKL 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K +RT++++   R+DGR ++ +R I  +   L   HGS LF RG TQ + V++LG   
Sbjct: 305 EKKAMRTMVVETGERVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVLSVLSLGMLN 364

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D++  T+   +M HYNF P  TGE  RMG+P RREIGHG LA RA+ PVLP   +
Sbjct: 365 EGQRLDTIEPTEGKRYMHHYNFPPFCTGETGRMGSPKRREIGHGNLAERALLPVLPDENE 424

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSE+ ES+GSSSMA+ CGS+LALMD GVPI +PV+GIAMGL+++    ++LSD
Sbjct: 425 FPYAIRVVSEVMESNGSSSMASTCGSTLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSD 484

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKV GT  GITA+QMD K  G++ +I+  ALQQAK GR  IL +M  V
Sbjct: 485 IQGLEDFLGDMDFKVTGTTEGITALQMDNKATGLTFDILARALQQAKEGRAFILQKMLDV 544

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E R       PR+  + +P D+IR+VIG GGKVIRGI ++TGA V+I +DGTV +  +
Sbjct: 545 IPEPRHTTRSTAPRIVSIQVPTDKIRDVIGSGGKVIRGIQDETGASVDIQEDGTVFVGGT 604

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             + ++ A E I+ I  VPE  + Y G+VV +  FGAFV+    +DGL+HIS+++  RV 
Sbjct: 605 GES-VDQAVERIKLIIKVPEPGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAKGRVE 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           K  DV+  GD V V +++ DDRGKI L
Sbjct: 664 KVEDVLNVGDEVKVVVIEVDDRGKISL 690


>gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC
           6803]
 gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC
           6803]
          Length = 718

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 303/695 (43%), Positives = 427/695 (61%), Gaps = 20/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T    +  +DG DF PLTV+Y+ R Y
Sbjct: 8   ISFDGRDIRLKMGTLAPQAGGSVLIQSGDTAVLVTATRAKG-RDGIDFLPLTVDYEGRLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E   LISR+IDR +RPLF    ++E Q++   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF+GP+   +V  +   +++NP   E   G LDL V+GT   ++M
Sbjct: 127 LAVTGASVAVILAQIPFKGPMAAVRVGLVGDDFIINPTYREVHNGDLDLVVAGTPAGIVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I A  +L       +   EP  +++     +  
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVQDLINAQRELMTDLGITLATSEPPPVNTAVEEFIAN 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--------HSSWNEGEIV-S 293
             S+ I   L    F   K  R   +D++K   V    +E         S   + ++V +
Sbjct: 247 RASKKIITVL--GQFDLGKDGRDAALDEIKATEVETAIAELPETDPVKQSVEEDPKLVGN 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
           +++ +  K++R  ++D  VR+DGR  E VR IS +VG L +R HGS LF RG TQ + + 
Sbjct: 305 LYKALTKKLMRKQIVDDGVRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLA 364

Query: 353 TLGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLG+  D Q   D L       ++ HYNF P + GE   M +P RREIGHG LA RAI P
Sbjct: 365 TLGSPGDAQDLADDLHPEDEKRYLHHYNFPPYSVGEARPMRSPGRREIGHGALAERAIIP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD
Sbjct: 425 VLPPQEDFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIKEGD 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A+ QA   RLHI
Sbjct: 485 EIRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIDGLSMEVVSKAIMQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M   + E R +L  F PR+  + I P+ I  VIG GGK I+GI EQT  K++I DDG
Sbjct: 545 LDKMLATIREPRPELSPFAPRLLTLKIEPEHIGMVIGPGGKTIKGITEQTSCKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IASS     E AR+MI ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIASSEGERAERARQMIYNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV K  D V  GD V VK+ + D +G++ L+
Sbjct: 665 LTEGRVGKVEDEVGVGDEVIVKVREIDSKGRLNLT 699


>gi|284044685|ref|YP_003395025.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
           14684]
 gi|283948906|gb|ADB51650.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
           14684]
          Length = 761

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/690 (41%), Positives = 442/690 (64%), Gaps = 8/690 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  + +E  G+ +  ETGR+A+Q+ GAV+   G+T+VL+T     +L+D  DF PLTV+ 
Sbjct: 5   VTRLSVEIGGKEISFETGRMAKQASGAVVVRSGDTMVLSTATAG-NLRD-VDFLPLTVDV 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPG + +RE R  E   L +RM+DR IRPLF K ++ ETQ++   +  D E
Sbjct: 63  EERMYAAGKIPGSFFKREGRAGEKATLTARMVDRPIRPLFPKGWRRETQLVTLTLSVDHE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFVSGT 181
               V++M  ASAALM+S +PF  PV   ++  ++G +V+NP  ++  +   LDL V+GT
Sbjct: 123 HPYDVLAMNGASAALMISDIPFPTPVGSVRIGKVDGNFVVNPNEEDLLENTDLDLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           ++A+LMVE  AN++ E  +LDA+   H+  K +     +LA+   K    ++      +L
Sbjct: 183 EEAILMVEAGANEIPEAEILDALDIAHDAIKKLCRLQWELARKAGKPKTEVEVPQVDERL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQ 299
             ++++     L  +  + +K  R      ++ ++ + Y + E  +    ++   F+ ++
Sbjct: 243 LRQLTRSHGRKLDRATAVVDKLERQDATKAVEAEVFARYAADEDDAETRAKVQLAFDKLE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             ++R  +  KK R DGR ++ +R I+ +VG+  RTHGS+LF RG TQA+   +LGT  +
Sbjct: 303 KSLIRERIAIKKKRPDGRRADEIRPITIEVGVTPRTHGSALFTRGQTQALSTASLGTTRE 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E  +D+L    R  +  HYNF P + GE   M  P RR+IGHG LA RA+ P++P T +F
Sbjct: 363 EMRLDTLGLETRKYYFHHYNFPPFSVGEAGFMRGPKRRDIGHGALAERALVPMVPSTEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS+I ES+GSSSMA+VCGSSL+LMDAGVP+ +PVAGIAMGL+K+GDD+I+LSDI
Sbjct: 423 PYAIRVVSDILESNGSSSMASVCGSSLSLMDAGVPLKRPVAGIAMGLIKEGDDYIVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G EDHLG MDFKVAGT  GITA+QMD+KI G++ +I+  AL QAK GR  IL +M+  L
Sbjct: 483 AGIEDHLGDMDFKVAGTSEGITALQMDIKITGVTFDILRDALAQAKEGREFILGKMATAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           ++ R +L ++ PR+  + I P++I  +IG GG+ IRG+ E+  A+++++D+G V I + +
Sbjct: 543 AKPREELSKWAPRISTVQIDPEKIGLLIGKGGETIRGLCEEFEAQIDVNDEGQVLIYAQN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVA 658
               +A  + IRS+T   E+   +KG+VVK   FGAFV      DGL+HIS +S   RV 
Sbjct: 603 GELGDALADRIRSMTKEVEIGDAFKGRVVKTTTFGAFVELAKGTDGLLHISNISPGRRVD 662

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
              +V+ +GD + V++++ D +RG+I L +
Sbjct: 663 TVEEVINKGDEIDVRVVEVDRERGRIGLRL 692


>gi|22299736|ref|NP_682983.1| polynucleotide phosphorylase/polyadenylase [Thermosynechococcus
           elongatus BP-1]
 gi|81742443|sp|Q8DGW9|PNP_THEEB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22295920|dbj|BAC09745.1| polyribonucleotide nucleotidyltransferase [Thermosynechococcus
           elongatus BP-1]
          Length = 715

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/693 (41%), Positives = 433/693 (62%), Gaps = 18/693 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I   GR +K+   + A Q+ G++L + GET VL T     + ++G DF PL V+Y+ER Y
Sbjct: 8   IPLDGRDIKVVLQKFAPQAAGSILISSGETAVLVTA-NRAAAREGIDFLPLVVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILI R+IDR +RPLF +  +++ QV+   +  D  + P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKAILIGRLIDRPLRPLFPQWLRDDLQVVATTVSLDENAPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF GP+   +V  +  ++V+NP   E ++G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIAVLLAQIPFNGPMAAVRVGLVGDEFVINPTYKEIERGGLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242
           VE  AN+L E  +++AI F +   + +I+A   L K     +   EP  ID    + + +
Sbjct: 187 VEAGANELPEADMIEAIDFAYEVIRDLIQAQRDLLKELGIDIVRAEPPAIDPTLENFIYD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294
             ++ +K  L+   F  +K VR   +D+++  +    ++          ++ N   + ++
Sbjct: 247 RAAEPVKAILK--RFEKDKNVRDAALDEVQGAIAQEIAALPEDDPVAVAAAENPKALPTL 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R  ++++ VR+DGR  + VR I  +VG+L +R HGS+LF RG TQ + V T
Sbjct: 305 FKAVTKKLMRQQIIEEGVRVDGRRLDEVRPIWCEVGVLPERVHGSALFNRGLTQVMSVTT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  D Q +D L       ++ HYNF P + GEV  + +P RREIGHG LA RA+ PVL
Sbjct: 365 LGSPADAQALDDLHPEDSKRYLHHYNFPPYSVGEVKPLRSPGRREIGHGALAERALEPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  SDGS+SM +VCGS+L+LMDAGVPI KPV+G AMGL+K+G++ 
Sbjct: 425 PPKEEFPYVIRVVSEVLSSDGSTSMGSVCGSTLSLMDAGVPIRKPVSGAAMGLIKEGNEV 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+   ++  A++QA+  RLHIL 
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPVAVIQQAIEQARPARLHILE 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M  VL + R QL    PR+  + IPPD I  VIG GGK +RGI EQ   KV+I ++G V
Sbjct: 545 KMLAVLDKPRPQLPPSAPRLLTLQIPPDMIGLVIGPGGKTVRGISEQYNVKVDISEEGLV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +    + AR  I  +T       +Y G+V +++  GAFV     ++G++HISQL+
Sbjct: 605 TITAPNETNAKQARAAIEGLTRKLNAGDVYLGRVTRIIPIGAFVELLPGKEGMIHISQLA 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
             RV K  D VK GD + VK+ + D +G+I L+
Sbjct: 665 EYRVGKVEDEVKIGDEIVVKIREVDSKGRINLT 697


>gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
           HTCC2155]
 gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
           HTCC2155]
          Length = 696

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/684 (41%), Positives = 439/684 (64%), Gaps = 15/684 (2%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+ +ETG++A  ++ AV  T GETVVL T     + + G DFFPL V Y+E+  A GK 
Sbjct: 15  RPITIETGKMALLANAAVTVTQGETVVLVTAC-SSAPRAGIDFFPLMVAYREKYSAAGKF 73

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
            GG+++RE+RP+E+EIL SRM DR +RPLF K + +E Q+   V+ +D  + P  ++M+ 
Sbjct: 74  LGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVNDPDTLAMLG 133

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           +SAALMLS LPF+GP+   +V  ++G++V NP  ++ + S L+L  SGT    +M+E + 
Sbjct: 134 SSAALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIYSGTPGKTIMIEGDC 193

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEM----SQ 246
           ++LSE+ + +A+ +  ++ + + +A  +L     K       KD++  K+EE++    + 
Sbjct: 194 DELSEERLFEALKYADSKVEVMAKAQLELQATFGKA-----KKDYATDKIEEDVKAAVAT 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
            I   +  +C + ++  R   +D +   +     ++      GE+   +  +    +R +
Sbjct: 249 AISGKIDEACLVIDRTERGAALDAVYATVEEALKAQFDEERHGELKEAYSHLIEMNIRRL 308

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++++  R DGR +E +R +SA+  L+ RTHGS+LF RG+TQA+V VTLG  +  Q  +++
Sbjct: 309 IIEEGKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETI 368

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G     F +HYNF   + GE  R+     REIGHG LA RA+  ++P  A +PYT+R++
Sbjct: 369 RGRYDKTFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMP--ADYPYTVRVI 426

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+  S+GS+SMA++CG SLALMDAGVP+ K VAGI++GLV++ D +++++DI G EDH 
Sbjct: 427 SEVMGSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKYVMITDILGSEDHY 486

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT  GITA Q+D+KI G+S ++M  A+ + K  R+ IL+ M   LS ++ ++
Sbjct: 487 GDMDFKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDGCLSSAQEEI 546

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            +  P+V  M I P++I  +IG GGK I+ I E+TGA++N++DDGTVK+ ++    ++AA
Sbjct: 547 SDHAPQVHAMKINPEKIGALIGPGGKHIKAICEETGAEINVEDDGTVKVFTADKTALKAA 606

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E + S    PE  KIY+G VV V +FGAFV   G   GL+HIS+L+  RV K +DVV E
Sbjct: 607 IEQVESYCFEPEAGKIYRGVVVSVKEFGAFVEIAGGHQGLLHISELADYRVEKVTDVVNE 666

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           GD V VK+L+ DDRG+++LS K  
Sbjct: 667 GDKVSVKILEIDDRGRMRLSRKAA 690


>gi|253682340|ref|ZP_04863137.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
           str. 1873]
 gi|253562052|gb|EES91504.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
           str. 1873]
          Length = 706

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/688 (42%), Positives = 436/688 (63%), Gaps = 5/688 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V    + K+G DFFPL++ YQ
Sbjct: 3   HVFETTVAGRKLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPAPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  I+G++++NP   + + S LDL V  T++
Sbjct: 123 LPNILAMNGASLALCLSSIPFTKPVGTVSVGLIDGEFIVNPTSKQREESILDLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242
            V+M+E    ++ EDV+ DAI+FG  ECK + +   K+ +   K+   +I  +  + +E+
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQEKVMEQYGKQKAELILHEINADIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+     + ++ + +I +K +R K +D++K+K+   FS ++   N  +I  V   +Q +V
Sbjct: 243 EVKDFAFDMIKEAMYITDKDLRNKAVDEVKEKVNEEFSEKYPD-NLADIGEVIYKMQKQV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L++K R DGR  + +R +SA+  LL RTHGS LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRNMILNEKRRPDGRSFDEIRPLSAETSLLPRTHGSGLFSRGLTQVMSVATLGSVSEGQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY 
Sbjct: 362 LDGIDEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV   D     IL+DI 
Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSKEEILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A+  RL IL  ++  + 
Sbjct: 482 GLEDFFGDMDFKVAGTEKGITAIQVDTKIEGLSNDCIKKAIGDARTARLTILKVINDCID 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R ++ ++ P+V  M I P +I++VIG GGK I  I+++TG K++I +DG V + +   
Sbjct: 542 KPREEVSKYAPKVFTMTINPSKIKDVIGSGGKTINKIIDETGVKIDIKEDGAVFVTAEDY 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A EMI   +   +  +IY G+V K  +FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 ESGRKALEMIEGYSKEVKEGEIYLGKVTKTSNFGAFVSILPGKEGLVHISKLDVKRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            DVV  GD + VK+ + D  G+I LS K
Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRINLSRK 689


>gi|284053181|ref|ZP_06383391.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis
           str. Paraca]
 gi|291569922|dbj|BAI92194.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis
           NIES-39]
          Length = 720

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 300/694 (43%), Positives = 431/694 (62%), Gaps = 19/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GA+L   G+T VL T       + G DF PL V+Y+ER Y
Sbjct: 8   ISFDGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEG-RPGIDFLPLLVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP +   L SR+IDR +RPL     +++ Q++   +  D +  P V
Sbjct: 67  AGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF GP+   +V  +   +++NP   E   G LDL V+G+   V+M
Sbjct: 127 LAVTGASVAVLLARIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGDLDLVVAGSPQGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFSKLEE 242
           VE  AN+L E  V++AI FG+     +I+A +++ +        +EP+  D      ++E
Sbjct: 187 VEAGANELPEHDVIEAIDFGYEAVMDLIKAQTEIMQELNIDNPVEEPLPEDRTLIEFIQE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK-KMVSYFSSEHSS--------WNEGEIVS 293
            +++ +K+ L    F   K  R   +D +K+ ++VS  +S             N   +  
Sbjct: 247 RVTEPVKKVL--GQFELNKDERDAALDVIKEEQIVSAIASMPEDDPISLFNIENPKAVGM 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
           +F+DI  K++R  +L   VR+DGR+ + VR +S +VGLL +R HGS LF RG TQ + + 
Sbjct: 305 IFKDITKKLMRQQILTDGVRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIA 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L       +M HYNF P + GE   M +P RREIGHG LA RA+ PV
Sbjct: 365 TLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETRPMRSPGRREIGHGALAERALLPV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   QFPY +RIVSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+G +
Sbjct: 425 LPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++  A+ +AK  RLHIL
Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVADAIAKAKPARLHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M +VL   R  L  F PR+  + I PD I  VIG GGK I+GI E+TG K++IDDDGT
Sbjct: 545 EKMLEVLPSPRPDLSPFAPRLLTLKIDPDLIGLVIGPGGKTIKGITEETGVKIDIDDDGT 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS+       A ++++ +T       +Y G+V +++  GAFV     ++G++HISQL
Sbjct: 605 VTIASTDSENAARAYQIVQGMTRKLNAGDVYVGKVTRIIPIGAFVEVLPGKEGMIHISQL 664

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV K  D V  GD V VK+ + D +G+I L+
Sbjct: 665 AEYRVPKVEDEVAVGDEVIVKVREIDPKGRINLT 698


>gi|282855612|ref|ZP_06264926.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
           W5455]
 gi|282586542|gb|EFB91796.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
           W5455]
          Length = 751

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/690 (41%), Positives = 437/690 (63%), Gaps = 12/690 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  +   G+ L  +TG++A+Q++ AV+A++GET +L T       + G DFFPL V+++E
Sbjct: 4   TYTLNVGGQDLVFKTGKVAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGGY++RE RP++  IL +R++DRSIR LF    +N+  V+  V+  D ++ 
Sbjct: 64  RYYAAGKIPGGYIKREGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
            +++++ AAS AL +S +P+ GPV   ++  I+G+ V+NP  D   + +LDL V+G    
Sbjct: 124 ANILAINAASMALTISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTLDLTVAGHAGG 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           + MVE  A ++ E+++++A+    +E K ++ A     +    +P  +     +   EE+
Sbjct: 184 ITMVEAGAREVPEELLVNALQTAQDEIKKIV-AFQLQVRAEIGQPKAVLPAPLAI--EEI 240

Query: 245 SQMIKEDLR----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + +K++LR     +  I  K  R   I  L +K  ++F+  ++   E  I    E +  
Sbjct: 241 DRWVKDNLREETAKAVMIHGKKERGAAISALVEKTTAHFADLYADA-ESYIAGAVESLVK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-ED 359
             +RT+    K+R DGR ++ +R IS +V +L + HGS+LF RG+TQA+VV TLG   ED
Sbjct: 300 STMRTITARDKIRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGED 359

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           +Q +D L   + N  F++HYNF P + GE+  M  P RREIGHG LA RA+ P++P   +
Sbjct: 360 DQIIDGLKLDEPNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHGALAERALAPLVPGEEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VS+I ES+GSSS A++CG SL++M AGVP+ K VAGIAMGL+K+GDD +IL+D
Sbjct: 420 FPYVVRVVSDILESNGSSSQASICGGSLSMMAAGVPMKKHVAGIAMGLIKEGDDMVILTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT  G+TA+QMD K GGI+  I+  AL QA + R+ IL+ M   
Sbjct: 480 IQGLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILSRALMQAHQARMQILDAMETC 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E    L    PR+  M I  D+IR+VIG GGKVIR IV+++GAK+N++DDG+V I + 
Sbjct: 540 IPEP-APLSPNAPRIFTMNIDVDKIRDVIGPGGKVIRNIVQESGAKINVEDDGSVYICAV 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +E AR+MI  I    E  + + G V ++M FGAFV     ++GL+HIS++ST+ + 
Sbjct: 599 SPDSVEKARQMIHDIVREVEAGEAFYGTVTRLMAFGAFVEVLPGKEGLLHISEISTKHIG 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K  DV   GD V V++ + DD+ +I LS +
Sbjct: 659 KVEDVFAPGDHVIVEVKEIDDQNRINLSRR 688


>gi|228477816|ref|ZP_04062444.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
           SK126]
 gi|228250508|gb|EEK09722.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
           SK126]
          Length = 741

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/693 (41%), Positives = 431/693 (62%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+ +AGRPL +E G++A+Q++GAV+  YG+T VL+T V  + +    DFFPL VNY+
Sbjct: 4   QTFEMTFAGRPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATA-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +
Sbjct: 63  EKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
           S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   D++   LDL V+GT++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSLLDLTVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++     + L+ 
Sbjct: 183 AINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDADLKV 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFED 297
           E+     + L  +  + EK  R      +K+++++ +    +   + E     +  + E 
Sbjct: 243 EIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLASYQERFAEDEDKETILRDVAEILEQ 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL   
Sbjct: 303 MEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPM 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP   
Sbjct: 363 SDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 423 EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ +  
Sbjct: 483 DIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPAILEEALAQAKVARFEILDVIES 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I S
Sbjct: 543 AIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A+ +I  +    +V ++Y   VV++  FGAFVH     D L+HIS+L+ ER 
Sbjct: 603 SDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALIHISELAWERT 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DVVK G TV VK++  D++G+I  S+K +
Sbjct: 663 EHVEDVVKVGGTVTVKIIKIDEKGRIDASIKAL 695


>gi|217035383|pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED
           Pnpase
          Length = 559

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/544 (50%), Positives = 373/544 (68%), Gaps = 14/544 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 14  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 73

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 74  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 134 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 194 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 247

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 248 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 307

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 308 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 367

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 368 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 427

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 428 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 487

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 488 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 547

Query: 540 SESR 543
           +  R
Sbjct: 548 NAPR 551


>gi|237823993|pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823995|pdb|3H1C|B Chain B, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823997|pdb|3H1C|C Chain C, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823999|pdb|3H1C|G Chain G, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824001|pdb|3H1C|I Chain I, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824003|pdb|3H1C|K Chain K, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824005|pdb|3H1C|M Chain M, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824007|pdb|3H1C|O Chain O, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824009|pdb|3H1C|R Chain R, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824011|pdb|3H1C|T Chain T, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824013|pdb|3H1C|V Chain V, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824015|pdb|3H1C|X Chain X, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
          Length = 549

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/544 (50%), Positives = 373/544 (68%), Gaps = 14/544 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESR 543
           +  R
Sbjct: 542 NAPR 545


>gi|331269622|ref|YP_004396114.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           BKT015925]
 gi|329126172|gb|AEB76117.1| Polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           BKT015925]
          Length = 706

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/688 (42%), Positives = 436/688 (63%), Gaps = 5/688 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V    + K+G DFFPL++ YQ
Sbjct: 3   HVFETIVAGRKLKGEFGKLGMLSDCALNISYGDTVVLINVNASPAPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  I+G+++ NP   + + S LDL V  T++
Sbjct: 123 LPNILAMNGASLALCLSSIPFTKPVGTVSVGLIDGKFIANPTSKQREESILDLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242
            V+M+E    ++ EDV+ DAI+FG  ECK + +   K+ +   K+   +I  +  S +E+
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQEKVMEQYGKQKAELILHEINSDIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+     + ++ + +I +K +R K +D++K+K+   FS  +   +  +I      +Q +V
Sbjct: 243 EVKDFAFDMIKEAMYITDKDLRNKAVDEVKEKVNQEFSERYPD-DLADIGEAIYKMQKQV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+++L++K R DGR+ + +R +SA+  LL RTHGS LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRSMILNEKRRPDGRNFDEIRPLSAETSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY 
Sbjct: 362 LDGIDEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV   D     IL+DI 
Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSKEEILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A+  RL IL  ++  + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITAIQVDTKIEGLSNDCIKKAISDARTARLTILKVINDCID 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R ++ ++ P+V  M I P +I++VIG GGK I  I+++TG K++I +DG V + +   
Sbjct: 542 KPREEVSKYAPKVFTMTINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGAVFVTAEDY 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A EMI   +   +  +IY G+V K+ +FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 ESGRKALEMIEGYSKEVKEGEIYLGKVTKISNFGAFVSILPGKEGLVHISKLDVKRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            DVV  GD + VK+ + D  G+I LS K
Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRINLSRK 689


>gi|170077686|ref|YP_001734324.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. PCC
           7002]
 gi|226704826|sp|B1XJU0|PNP_SYNP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169885355|gb|ACA99068.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. PCC
           7002]
          Length = 714

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 303/698 (43%), Positives = 432/698 (61%), Gaps = 20/698 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   I + GR ++L+TG  A Q+ G+VL   G+T VL +       + G DF PL V+Y+
Sbjct: 4   HIQSISFDGREIRLKTGLFAPQAGGSVLIESGDTAVLVSATTAPG-RQGIDFLPLLVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGGYLRRE RP E   LISR+IDR +RPLF +  +++ Q++   +  D E 
Sbjct: 63  ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPMRPLFPQWLRDDIQIVATTLSLDEEV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
            P V+++  AS A +L+GLPF GP+   +V  +   ++LNP   E   G LDL V+GT D
Sbjct: 123 PPDVLAVTGASVATLLAGLPFYGPMAAVRVGLVGDDFILNPTYREMMNGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  +++AI F +   + +IEA   L K     M + EP   D +   
Sbjct: 183 GVIMVEAGANQLPEADMIEAIDFAYEAIQELIEAQRALMKELGVEMVSAEPPAKDEELEK 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH----SSWNEGE 290
            + +  +  IK+ L  S F  +K  R   +D++K     + +     +      +  E +
Sbjct: 243 FIGDRTTDKIKKVL--SQFDLDKNGRDAALDEIKATEIIEAIEALPEDAPLRLKTTEEPK 300

Query: 291 IV-SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQA 348
           ++ + F+ +  K++R+ +++  VR+DGR  + VR IS +  +L R  HGS LF RG TQ 
Sbjct: 301 LIDNTFKALTKKLMRSQIVEDGVRVDGRKLDQVRPISCRTAVLPRAVHGSGLFNRGLTQV 360

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + + TLGT  D Q +D L  +    ++ HYNF P + GE   M +P RREIGHG LA RA
Sbjct: 361 LSIATLGTPGDAQEMDDLHPSDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERA 420

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K
Sbjct: 421 LLPVLPPKDEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIK 480

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G +  IL+DI G ED LG MDFKVAGT  GITA+QMDMKI G++  ++  A++QA   R
Sbjct: 481 EGKEVRILTDIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLAVEVVAEAIKQALPAR 540

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL +M+ V++E + +L    PR+  + I PD I  VIG GGK I+GI EQT AKV+I 
Sbjct: 541 LHILEKMTDVIAEPK-ELSPAAPRLLTIKIDPDLIGMVIGPGGKTIKGITEQTRAKVDIA 599

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDGTV IASS     E A+ +I ++T       +Y G+V +++  GAFV     ++G++H
Sbjct: 600 DDGTVTIASSESENAEKAKRLIVNMTRKLNEGDVYFGKVTRIIQIGAFVEIMPGKEGMIH 659

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           ISQL+  RV K  D V  GD V VK+ + D++G+I L+
Sbjct: 660 ISQLAEGRVGKVEDEVAVGDEVVVKVREIDNKGRINLT 697


>gi|118443480|ref|YP_878203.1| polynucleotide phosphorylase/polyadenylase [Clostridium novyi NT]
 gi|187610259|sp|A0Q0Q1|PNP_CLONN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118133936|gb|ABK60980.1| polyribonucleotide nucleotidyltransferase [Clostridium novyi NT]
          Length = 705

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 290/689 (42%), Positives = 442/689 (64%), Gaps = 7/689 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V      K+G DFFPL++ YQ
Sbjct: 3   HIFETTVAGRTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  I+G++++NP   + + S LDL V  T+D
Sbjct: 123 LPNILAMNGASLALCLSSIPFTIPVGTVSVGLIDGEFIINPTSKQREESILDLTVCATKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLE 241
            V+M+E    ++ EDV+ DAI+FG  ECK + +   K+ +   K+   +++   D + +E
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQQKVMEQYGKQKAELILHEID-ADIE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+ +   + ++ + +I +K  R K +D++K+K+   F  ++   N G+I      +Q +
Sbjct: 242 KEVREFAFDMVKEAMYITDKDSRNKAMDEVKEKVSEEFDEKYPD-NLGDIGEAIYKMQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR ++L++K R DGR  + +R +S++V LL RTHGS LF RG TQ + V TLG+  + Q
Sbjct: 301 VVRNMILNEKRRPDGRYFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSISEGQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY
Sbjct: 361 VLDGIEEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479
            +R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGLV  +D +   IL+DI
Sbjct: 421 AIRVVSEVLSSNGSTSQASVCGSTLALLDAGVPMKRPAAGIAMGLVTSEDLEKEEILTDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A++ RL IL  ++  +
Sbjct: 481 QGLEDFFGDMDFKVAGTEKGITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNCI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R ++ ++ P+V  M+I P +I++VIG GGK I  I+++TG K++I +DG+V + +  
Sbjct: 541 DKPREEVSKYAPKVFTMSINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGSVFVTAED 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A  MI   +   +  ++Y G+V K+ +FGAFV     ++GLVHIS+L  +RV K
Sbjct: 601 YESGKKALAMIDGYSREVKEGEVYLGKVTKIANFGAFVEILPGKEGLVHISKLDVKRVNK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             DVV  GD + VK+ + D  G++ LS K
Sbjct: 661 VEDVVSVGDEILVKVTEIDSMGRVNLSRK 689


>gi|239781891|pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781893|pdb|3GCM|B Chain B, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781895|pdb|3GCM|C Chain C, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781908|pdb|3GLL|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core
 gi|239781910|pdb|3GME|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase In
           Complex With Rnase E And Manganese
          Length = 549

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/544 (50%), Positives = 373/544 (68%), Gaps = 14/544 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSK 239
           MVE EA  LSED +L A++FGH + + VI+ I++L K   K       EP+         
Sbjct: 188 MVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV------NEA 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+
Sbjct: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI
Sbjct: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + +
Sbjct: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541

Query: 540 SESR 543
           +  R
Sbjct: 542 NAPR 545


>gi|302387373|ref|YP_003823195.1| polyribonucleotide nucleotidyltransferase [Clostridium
           saccharolyticum WM1]
 gi|302198001|gb|ADL05572.1| polyribonucleotide nucleotidyltransferase [Clostridium
           saccharolyticum WM1]
          Length = 709

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/692 (41%), Positives = 437/692 (63%), Gaps = 19/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA    YG+TVVLAT       +DG DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDVGRVAKQANGAAFMHYGDTVVLATATASDKPRDGIDFFPLSVEYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D + SP +
Sbjct: 67  AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQDCSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP    Q+  ++G+ V+NP   + Q S + L V+ T++ V+M
Sbjct: 127 TAMLGSAIATCISDIPFDGPCASTQIGLVDGELVVNPTQAQKQVSDMALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED +++AI   H   + +I+ I  +   C K      S     + EE+   
Sbjct: 187 IEAGANEVPEDKMIEAIFKAHEVNQEIIKFIDTIVAECGKPKHGYTS---CAVPEELFAA 243

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E++ V+ F  EK VR + I ++  K+   F ++   W    GE +  +   Q 
Sbjct: 244 IKEIVTPEEMEVAVFTDEKQVREENIRNITAKLEEAF-ADKEEWLSVLGEAIYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR  + +R ++A++ +L R HGS++F RG TQ + + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAMDQIRHLAAEIDMLPRVHGSAMFTRGQTQILNICTLAPLSES 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D +   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QRLDGIDDMETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICSSSMSLMAAGVPIKAAVAGISCGLVTGDTDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A++  ++ RL+IL+E M+
Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRTTRKARLYILDEVMA 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++E R ++G++ P+++ ++I P +I +V+G  GKVI  I+E+TG K++I DDG V + 
Sbjct: 540 KAIAEPRKEVGKYAPKIDQISIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGNVSVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    I+ A ++I+SI    E  +I+ G+VV++M+FGAFV     +DG++HIS+LS +R
Sbjct: 600 GTDQTMIDRAIQIIKSIVTEIEAGQIFTGKVVRIMNFGAFVELAPNKDGMIHISKLSEKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           VAK  DV+  GD V VK+++ D  G+I LSMK
Sbjct: 660 VAKVEDVINIGDEVTVKVIEVDKMGRINLSMK 691


>gi|153855229|ref|ZP_01996395.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
 gi|149752228|gb|EDM62159.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
          Length = 695

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/693 (42%), Positives = 428/693 (61%), Gaps = 15/693 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T E+E AGRPLK++ GR+A+Q++GAVL  YG+T VL T       +DG DFFPL+V Y E
Sbjct: 4   TFEMELAGRPLKVDVGRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   V+  D + +
Sbjct: 64  RMYAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCA 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   +   S + L V+ T++ 
Sbjct: 124 PELTAMLGAAIATTISDIPFDGPISTTQVGLVDGEFVFNPTAAQRAVSDMALTVASTREK 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           V+M+E  AN++ E  ++DAI   H   + VI  I  +   C K+    +S     + EE+
Sbjct: 184 VIMIEAGANEVPEQQMIDAIFAAHELNQKVIAFIDTIVAECGKQKHEYES---CAVPEEL 240

Query: 245 SQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              IK     E++ V+ F  +K  R + I  + +K+   F +E+  W      +V++  Q
Sbjct: 241 FAAIKEIVTPEEMEVAVFSDDKQTREENIRVVTEKLEEAF-AENEEWLAVLPEAVYQ-YQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR+ + +R ++A+V L+ R HGS++F RG TQ   + TL    +
Sbjct: 299 KKTVRKMILKDHKRPDGREIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICNICTLAPLSE 358

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L   +    +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+
Sbjct: 359 AQKLDGLDEAETTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476
           FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L
Sbjct: 419 FPYAIRTVSETFESNGSTSQASVCASSMSLMSAGVPIKAAVAGISCGLVTGDTDDDYLVL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + ++ RL+I++E M
Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAKTRKARLYIIDEVM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +   R Q+GEF P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V I
Sbjct: 539 NKAIDAPRAQVGEFAPKIVQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +    +E A+++I  I    E  ++ +G+VV + DFGAF+ F   ++G+VHIS+LS E
Sbjct: 599 CGTDAKSMEEAQKLIHIIVTDFEAGQVLEGKVVSIKDFGAFLEFAPGKEGMVHISKLSKE 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           RV +  DV+  GD V V  L  D  G+I  SMK
Sbjct: 659 RVNRVEDVLTLGDVVKVVCLGKDKMGRISFSMK 691


>gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
 gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
          Length = 707

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/688 (42%), Positives = 441/688 (64%), Gaps = 13/688 (1%)

Query: 10  EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           EW     GR L ++ G++A+QS GAVL  +G+T VLAT      + +G DF PLTV +QE
Sbjct: 3   EWRREILGRELVVQHGKVAKQSSGAVLVRFGDTAVLATANISDKVIEGIDFVPLTVEFQE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    
Sbjct: 63  RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEIQVIVTVLSADPNVP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P VV + A S AL +S +PFEG V G ++ Y +GQ++  P   D ++G +D+ V+GT+DA
Sbjct: 123 PDVVGIFAVSLALNVSKIPFEGIVAGIRIGYRDGQFIAFPTEEDIEKGLMDITVAGTKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243
           V MVE EA ++SE+ ++ A+ F H+  K +++   ++      E I V++ +    L E 
Sbjct: 183 VTMVEGEAKEVSEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPEPPEGLVET 242

Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI----VSVFEDI 298
            + ++ +E+L     +  K  R   + + ++K++S  +   S  +  EI      ++E+ 
Sbjct: 243 FNSLLDREELERRILVKAKKEREAALKEYEEKLLSQTAEALSIVDPEEIKPFVSELYEEA 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   
Sbjct: 303 VKKTMRRLIVEKGIRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +
Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  +IL+D
Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVILTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL++M + 
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDKMYET 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597
           +S  R  L  + P +++  I PD++ +VIG GG+VI+ I++    KV IDD+ G VK+  
Sbjct: 543 ISAPRPHLSRYAPIIKVTKIDPDKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S   ++ A  +IR I    EV +I +G++ ++  +G F+     + GL+H S++  E +
Sbjct: 603 NSEENVDNAIALIREIAKEIEVGEILEGKITRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +    VK GDT+ V++++ DD G+++ 
Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQF 689


>gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila
           RKU-1]
 gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila
           RKU-1]
          Length = 708

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 298/697 (42%), Positives = 445/697 (63%), Gaps = 13/697 (1%)

Query: 10  EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           EW     GR L ++ G++A+QS G+ L  +G+TVVLAT        +G DF PLTV +QE
Sbjct: 3   EWRRNILGRELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    
Sbjct: 63  RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P VV + AAS AL +S +PFEG V G +V Y +GQ++  P   D ++G +D+ V+GT+DA
Sbjct: 123 PDVVGIFAASLALNVSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243
           V MVE EA +++E+ ++ A+ F H+  K +++   ++      E I V++      L E 
Sbjct: 183 VTMVEGEAKEVAEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEGLVEA 242

Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EG---EIVSVFEDI 298
              ++ KE+L     +  K  R   + + ++++++  + + S  + EG    +  ++ED 
Sbjct: 243 FKDLLNKEELERRILVKVKKEREVALKEYEEQLLNQIAEKLSVTDLEGIKPFVSELYEDA 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   
Sbjct: 303 VKKTMRRLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +
Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  IIL+D
Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL+ M + 
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYET 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597
           +S  R  L ++ P +++  + P+++ +VIG GG+VI+ I++    KV IDD+ G VK+  
Sbjct: 543 ISAPRPHLSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS   ++ A E+IR I    EV ++ +G+V ++  +G F+     + GL+H S++  E +
Sbjct: 603 SSEENVDKAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +    VK GDT+ V++++ DD G+++       +NT
Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQFKRVTEGENT 698


>gi|149276240|ref|ZP_01882384.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
 gi|149232760|gb|EDM38135.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
          Length = 715

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 298/702 (42%), Positives = 449/702 (63%), Gaps = 25/702 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DG+V+   G+T++LATVV     K G DF PL+V+YQE+  A G+
Sbjct: 13  GRTIEIETGKLAKQADGSVVVRMGDTMLLATVVSTVGAKSGVDFLPLSVDYQEKYAAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE+R ++ E+LISR++DR++RP+F + Y ++TQV+I ++  D    P  ++ +
Sbjct: 73  IPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMITLISSDKNIMPDCLAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PF GP+   +V  I+GQ+V+NP + D ++ +++  V+GT++ ++MVE E
Sbjct: 133 AASAAIAVSDIPFNGPISEVRVAKIDGQFVINPYVSDLERATMEFLVAGTENDIVMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           A+++SE  +++AI F H      ++A  +LA++  K     + + +S   E+ +  +KE 
Sbjct: 193 ADEISESDMVEAIEFAHKAIVVQVQAQKELAQLVGK----TEKRAYS--HEDSNPELKEK 246

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIV---------SVFEDIQA 300
           +  + +  +K     + +  K +    F +    +    GE +           F D+Q 
Sbjct: 247 VYAATY--DKVYAIAKSNTSKGERGDAFGAVLMDFIATLGEDIDDVTGFLSKKYFHDVQY 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R ++LD+ +R+DGRD  TVR I ++VG L   HGS++F RG+TQ++  VTLG+++DE
Sbjct: 305 DAIRNLVLDEGIRLDGRDVRTVRPIWSEVGYLPSAHGSAVFTRGETQSLTTVTLGSKDDE 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D       N F++HYNF   +TGEV       RREIGHG LA R++  VLP   + P
Sbjct: 365 QMIDGAFINGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGIEENP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           YT+RIVS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMGL+ D     + ILSD
Sbjct: 425 YTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTGKYAILSD 484

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKV GT+ GI A QMD+KI G+   ++  AL QAK  RLHILNEM K 
Sbjct: 485 ILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNALNQAKEARLHILNEMKKT 544

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKI 595
           ++  R    +  PR+  ++I  + I  VIG GGK+I+ +  +TGA ++I+   + G V++
Sbjct: 545 IAAPREDYKDHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGASISIEEVGNKGIVEV 604

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + + A I+AA   I +I   PE+  IY G+V  +M FGAFV     +DGL+HIS++   
Sbjct: 605 FADNKASIDAAVARINAIAAKPEIGAIYDGKVKSIMPFGAFVEIMPGKDGLLHISEIDWT 664

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           R+     V KEGD + VKLLD D +GK+KLS KV+     KP
Sbjct: 665 RLETMDGVFKEGDKLQVKLLDIDKQGKMKLSRKVLLPRPPKP 706



 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 44/226 (19%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY---------DRSLKDG 53
           DV TV      RP+  E G +   + G+ + T GET  L TV           D +  +G
Sbjct: 322 DVRTV------RPIWSEVGYLP-SAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFING 374

Query: 54  QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN----EILISRMIDRSIRPLFSKCYKN 109
            + F L  N+            G+   E RP       EI    +  RS++ +     +N
Sbjct: 375 YNKFLLHYNFP-----------GFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGIEEN 423

Query: 110 ETQVIINVMQHDLES--SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI----NGQYVL 163
                I ++   LES  S  + ++ A + ALM +G+  + PV G  +  I     G+Y +
Sbjct: 424 --PYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTGKYAI 481

Query: 164 NPRL--DEDQ-GSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAI 204
              +  DED  G +D  V+GT+  ++   ++L+ N L  +V+ +A+
Sbjct: 482 LSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNAL 527


>gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 718

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/694 (42%), Positives = 437/694 (62%), Gaps = 19/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T     + ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEA-REGVDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q+I   +  D    P V
Sbjct: 67  AAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDELVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIATLIAQIPFYGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPDGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A    I++L   +  +EP + D    + + +
Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIQAQRDLIAELGLTIVHQEPPIPDQSLENYIRD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-------EHSSWNEGEIV-SV 294
             S+ IK+ L  + F   K  R   +D +K  + S   S         ++   G+++ + 
Sbjct: 247 RASEEIKKIL--AQFELTKTERDAALDVVKSAIASSIESLGEEDPIRIAATANGQVLENT 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+DI    +R  +++  VR+DGR  + VR +S+QVG+L +R HGS LF RG TQ +   T
Sbjct: 305 FKDITKYFMRRQIVEDNVRVDGRKLDEVRPVSSQVGVLPRRVHGSGLFNRGLTQVLSACT 364

Query: 354 LGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           LGT  D Q + D L   Q   ++ HYNF P + GE   + AP RREIGHG LA RAI PV
Sbjct: 365 LGTPGDAQSLSDDLQVDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAILPV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+G +
Sbjct: 425 LPTKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A++QA+  RLHIL
Sbjct: 485 VRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIKQAVEQARDARLHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M + + + R +   F PR+  + I PD I  VIG GGK I+GI E+TGAK++I+D G 
Sbjct: 545 EKMLQTIDKPRTETSPFAPRLVTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDSGI 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I++      + A+ +I+ +T       +Y G+V +++  GAFV F   ++G++HISQL
Sbjct: 605 VTISAIDEGRAKRAKSIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIHISQL 664

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV K  D V  G+ V VK+ + D +G+I L+
Sbjct: 665 ADYRVGKVEDEVAVGEEVIVKVREIDSKGRINLT 698


>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
           MSB8]
 gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
 gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
 gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
          Length = 708

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 298/697 (42%), Positives = 445/697 (63%), Gaps = 13/697 (1%)

Query: 10  EW----AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           EW     GR L ++ G++A+QS G+ L  +G+TVVLAT        +G DF PLTV +QE
Sbjct: 3   EWRRNILGRELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    
Sbjct: 63  RFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA 184
           P VV + AAS AL +S +PFEG V G +V Y +GQ++  P   D ++G +D+ V+GT+DA
Sbjct: 123 PDVVGIFAASLALNVSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243
           V MVE EA +++E+ ++ A+ F H+  K +++   ++      E I V++      L E 
Sbjct: 183 VTMVEGEAKEVTEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEGLVEA 242

Query: 244 MSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EG---EIVSVFEDI 298
              ++ KE+L     +  K  R   + + ++++++  + + S  + EG    +  ++ED 
Sbjct: 243 FKDLLNKEELERRILVKVKKEREVALKEYEEQLLNQIAEKLSVTDLEGIKPFVSELYEDA 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   
Sbjct: 303 VKKTMRRLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPM 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +
Sbjct: 363 DVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  IIL+D
Sbjct: 423 FPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL+ M + 
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYET 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIAS 597
           +S  R  L ++ P +++  + P+++ +VIG GG+VI+ I++    KV IDD+ G VK+  
Sbjct: 543 ISAPRPHLSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVG 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS   ++ A E+IR I    EV ++ +G+V ++  +G F+     + GL+H S++  E +
Sbjct: 603 SSEENVDKAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVG-EDM 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +    VK GDT+ V++++ DD G+++       +NT
Sbjct: 662 RQFLKKVKVGDTIKVQVINIDDLGRLQFKRVTEGENT 698


>gi|284929051|ref|YP_003421573.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
 gi|284809510|gb|ADB95215.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
          Length = 715

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/711 (41%), Positives = 433/711 (60%), Gaps = 52/711 (7%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GA+L   G+T VL T    +  ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKLGLLAPQAGGAILIQSGDTAVLVTATTSKG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E   LISR+IDR +RPLF   ++N+ Q+I   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPERVTLISRLIDRPLRPLFPNWFRNDIQIIATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++ + +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIAVIQAQIPFFGPMAAVRVGLVGDDFIINPTYREVEDGDLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  ANQL E  V++AI FG+   + +I A  ++                  +EE    +
Sbjct: 187 IEAGANQLPEQDVIEAIDFGYEAVRDLIGAQQEI------------------MEELGISL 228

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-------------------------FSSE 282
           +K D  V   + EK++  +  + +KK +V Y                          S E
Sbjct: 229 VKADPPVKNEVLEKFISDQSSESIKKVLVQYNLGKAERDIALDEIKETTINEIITNLSEE 288

Query: 283 HS-----SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTH 336
            S       +   + ++++ +  K++R+ ++D ++R+DGR  + VR I+  VG+L  R H
Sbjct: 289 DSIKIAAKEDPKAVNNLYKGLTKKLMRSQIVDNEIRVDGRKLDEVRPITCDVGILPPRVH 348

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           G  LF RG TQ + + TLGT  D Q + D L       ++ HYNF P +  E   M +P 
Sbjct: 349 GCGLFNRGLTQVLSLATLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPYSVAETKPMRSPG 408

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PVLPQ  +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI
Sbjct: 409 RREIGHGALAERALLPVLPQQEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPI 468

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           +KPV+G AMGL+K+G++  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +
Sbjct: 469 AKPVSGAAMGLIKEGEEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSMD 528

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  A++QA   RLHIL +M   + + R +L  F PR+  M I P+ I  +IG GGK I+
Sbjct: 529 VIAKAIEQALPARLHILEKMLSTIDKPRSELSTFAPRLLTMKIDPEMIGLIIGPGGKTIK 588

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           GI EQTG+K++I DDG V IA+    + E A+ +I ++T      ++Y G+V +++  GA
Sbjct: 589 GITEQTGSKIDISDDGMVTIAAIQAKKAEKAKSIIFNMTRKLNEGEVYLGRVTRLIPIGA 648

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           FV     ++G++HISQL+  RV K  D V  GD V VK+ + D++G++ L+
Sbjct: 649 FVEVLPGKEGMIHISQLAERRVGKVEDEVAVGDEVVVKVREIDNKGRLNLT 699


>gi|86606857|ref|YP_475620.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           JA-3-3Ab]
 gi|123504388|sp|Q2JQF4|PNP_SYNJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86555399|gb|ABD00357.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           JA-3-3Ab]
          Length = 712

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/694 (42%), Positives = 437/694 (62%), Gaps = 14/694 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +T  I + GR + +  G +A Q+   V  T GET VL T    ++ + G DF PL V+Y+
Sbjct: 4   YTRSISFYGREIDINIGLMAPQAGCGVWLTSGETSVLVTATR-QAGRAGVDFLPLLVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGGYLRRE RP E   LISR+IDR +RPLF +  +++ Q++   +  D + 
Sbjct: 63  ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPLRPLFPEWLRDDVQIVATTLSVDDKV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+ ++ AS A+  + +PF GPV   +V  +  ++++NP   E + G LDL V+G  D
Sbjct: 123 PPDVLCILGASLAIHSARIPFNGPVAAVRVGLVKDEFIINPTYAEIEAGDLDLVVAGCAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+MVE  ANQL E  V++AI FG    + +++A  ++       P+ +     ++ L  
Sbjct: 183 GVIMVEAGANQLPEKDVVEAIEFGFEAVQELLKAQQQVFADLNITPVELPPPPQNEELVA 242

Query: 243 EMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIV 292
            +++  +E++R  +  F+ +K  R +Q++ +K K+ +   +             N  E+ 
Sbjct: 243 FVAEHAQEEIRSVLRQFL-DKTSREQQLEAIKAKLEAQIQARPEGDPLRLYLLENPKELD 301

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + F+ +  K++R  +L + VR+DGR  + VR +S +VGL+ R HGS+LF RG TQ + + 
Sbjct: 302 NQFKALTKKLMRQQILQEGVRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSIT 361

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L       +M HYNF   + GEV    +P RREIGHG LA RA+ PV
Sbjct: 362 TLGTPGDAQELDDLHPVDEKRYMHHYNFPGFSVGEVRPSRSPGRREIGHGALAERALVPV 421

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP+  +FPY +R+VSE+  S+GS+SMA+VCGS+L+LMDAGVPI  PV+G+AMGL+K+GD+
Sbjct: 422 LPKEEEFPYVVRVVSEVLSSNGSTSMASVCGSTLSLMDAGVPIKAPVSGVAMGLIKEGDE 481

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGT +GITA+QMDMKI GI+ +++  AL QAK GR +IL
Sbjct: 482 VRILTDIQGIEDFLGDMDFKVAGTRAGITALQMDMKITGITVDVVEKALLQAKAGRDYIL 541

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M +VL   R QL +  PR+    + P+ I  +IG GGK++R I E TGAKV+I DDGT
Sbjct: 542 DKMLEVLPAPRPQLAKTAPRLLTFKVDPEDIGKIIGPGGKMVRSITEATGAKVDISDDGT 601

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + ++SS   + EAAR MI ++    E  ++Y G+V +++  GAFV F   ++G++HISQL
Sbjct: 602 ITVSSSVGGQAEAARAMIENLVRRVEEGQVYLGKVTRIIPIGAFVEFLPGKEGMIHISQL 661

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV++  D +   D V VK+   D +G++ L+
Sbjct: 662 AEYRVSRVEDEIAVADEVVVKVRSIDHKGRVNLT 695


>gi|81301249|ref|YP_401457.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
           PCC 7942]
 gi|123556249|sp|Q31KE9|PNP_SYNE7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81170130|gb|ABB58470.1| Polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
           PCC 7942]
          Length = 716

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/698 (41%), Positives = 427/698 (61%), Gaps = 18/698 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           + + GR ++LE G  A Q+ G+VL + G+T VL       + ++G DF PLTV+Y+ER Y
Sbjct: 8   LSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRS-TAREGIDFLPLTVDYEERMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E   L SR+IDR +RPLF    +++ QV+   +  D    P V
Sbjct: 67  AAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E ++G LDL V+GT   V+M
Sbjct: 127 LAVTGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTPAGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM--- 244
           VE  ANQL E  V++AI FG+   + +I+A   L      E I+ ++ +     E     
Sbjct: 187 VEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNTLENFVRD 246

Query: 245 --SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294
             S  +++ L+   F   K  R   +D++K  +V   ++          ++     + + 
Sbjct: 247 RASSGVQQVLQHFSFT--KSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKALGNT 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVT 353
           F+ +   ++R  +L   VR+DGR  + VR IS+QVGLL  R HGS LF RG TQ + + T
Sbjct: 305 FKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIAT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L    +  ++ HYN  P + GE   M +P RREIGHG LA RA+ PVL
Sbjct: 365 LGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERALLPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++GD++
Sbjct: 425 PSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDEY 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G ED LG MDFKVAGTD GITA+QMDMKI G+   I+  A+ QAK  RLHILN
Sbjct: 485 RVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARLHILN 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + ++  R  L  + PR+  + I P+QI  VIG GGK IR I EQTGAK++I+D G V
Sbjct: 545 KMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIEDTGAV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I++        A+ +I  +T       +Y G+V +++  GAFV F   ++G++HISQ++
Sbjct: 605 TISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQIA 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
             RVA+  D +  GD V VK+ + D +G++ L+ K +D
Sbjct: 665 DYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGID 702


>gi|332708787|ref|ZP_08428758.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
 gi|332352329|gb|EGJ31898.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
          Length = 716

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 293/696 (42%), Positives = 432/696 (62%), Gaps = 23/696 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A QS G+V+   G+T VL T       ++G DF PL V+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQSGGSVMIQSGDTAVLVTATRAPG-REGIDFLPLVVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  IL SR+IDR +RPLF    +++ Q++   +  D +  P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKVILTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++   +PF GP+   +V  +   +++NP   E + G LDL V+G+   V+M
Sbjct: 127 LAVTGASIAVLQGSIPFYGPMAAVRVGLLGDDFMINPTYKEIENGDLDLVVAGSPQGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A   L +     +   EP  +DS     LEE
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVQDLIKAQHDLLEELGIAIVIGEPPAVDSN----LEE 242

Query: 243 EMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEI 291
            +     + ++  +S F  +K  R   +D++K   V    ++           + N   +
Sbjct: 243 FIRVRATDKIKGVLSQFDLDKNGRDVALDEIKDSAVKAEITQLKEDDPIRVAVNENSALV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIV 350
             +F+ +  K++RT ++++ VR+DGR  + VR +S Q  LL QR HGS+LF RG TQ + 
Sbjct: 303 DKLFKSLTKKLMRTQIVEEGVRVDGRKLDQVRPVSCQTSLLPQRVHGSALFNRGLTQVLS 362

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            VTLGT  D Q +D L+      ++ HYNF P + GEV  + +P RREIGHG LA RA+ 
Sbjct: 363 TVTLGTPGDAQTLDDLNPEDEKRYLHHYNFPPFSVGEVKPLRSPGRREIGHGALAERALV 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMD+GVPI+KPV+G AMGL+K+G
Sbjct: 423 PVLPPQHEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDSGVPITKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S + +  A++QAK  RLH
Sbjct: 483 DEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKITGLSMDTIAQAIEQAKPARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M  V+      +  F PR+  M I P+ I  VIG GGK I+GI EQTGAK++I+DD
Sbjct: 543 ILEKMLAVIDTPSTDMSPFAPRLLTMKIDPEFIGTVIGPGGKTIKGITEQTGAKIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV +++        A  +I+ +T       +Y G+V +++  GAFV     ++G++HIS
Sbjct: 603 GTVTVSAMDGDRATKAINIIQGLTRKLHEGDVYVGRVTRIIPIGAFVEILPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           QL+  RV K  D +  GD V VK+ + D++G++ L+
Sbjct: 663 QLADYRVGKVEDELAVGDEVVVKIREIDNKGRLNLT 698



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 30/208 (14%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVD 364
           V +DK +  DGRD      I  +VGLL    G S+ I+ GDT  +V  T           
Sbjct: 2   VEIDKSISFDGRD------IRLKVGLLAPQSGGSVMIQSGDTAVLVTAT----------- 44

Query: 365 SLSGTQRNDFM---MHYNFLPCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQT 416
              G +  DF+   + Y     A G +      R G P  + I   RL  R + P+ P  
Sbjct: 45  RAPGREGIDFLPLVVDYEERLYAAGRIPGGFLRREGRPPEKVILTSRLIDRPLRPLFPSW 104

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +    +   +   +      +  V G+S+A++   +P   P+A + +GL+  GDDF+I 
Sbjct: 105 LRDDIQIVATTLSMDEQVPPDVLAVTGASIAVLQGSIPFYGPMAAVRVGLL--GDDFMI- 161

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            + +  E   G +D  VAG+  G+  ++
Sbjct: 162 -NPTYKEIENGDLDLVVAGSPQGVIMVE 188


>gi|56751675|ref|YP_172376.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
           PCC 6301]
 gi|81561823|sp|Q5N1G4|PNP_SYNP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56686634|dbj|BAD79856.1| polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
           PCC 6301]
          Length = 716

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/698 (41%), Positives = 426/698 (61%), Gaps = 18/698 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           + + GR ++LE G  A Q+ G+VL + G+T VL       + ++G DF PLTV+Y+ER Y
Sbjct: 8   LSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRS-TAREGIDFLPLTVDYEERMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E   L SR+IDR +RPLF    +++ QV+   +  D    P V
Sbjct: 67  AAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           ++   AS A +++ +PF GP+   +V  +   +++NP   E ++G LDL V+GT   V+M
Sbjct: 127 LAATGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTPAGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM--- 244
           VE  ANQL E  V++AI FG+   + +I+A   L      E I+ ++ +     E     
Sbjct: 187 VEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNTLENFVRD 246

Query: 245 --SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSV 294
             S  +++ L+   F   K  R   +D++K  +V   ++          ++     + + 
Sbjct: 247 RASSGVQQVLQHFSFT--KSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKALGNT 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVT 353
           F+ +   ++R  +L   VR+DGR  + VR IS+QVGLL  R HGS LF RG TQ + + T
Sbjct: 305 FKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIAT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L    +  ++ HYN  P + GE   M +P RREIGHG LA RA+ PVL
Sbjct: 365 LGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERALLPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++GD++
Sbjct: 425 PSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDEY 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G ED LG MDFKVAGTD GITA+QMDMKI G+   I+  A+ QAK  RLHILN
Sbjct: 485 RVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARLHILN 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + ++  R  L  + PR+  + I P+QI  VIG GGK IR I EQTGAK++I+D G V
Sbjct: 545 KMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIEDTGAV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I++        A+ +I  +T       +Y G+V +++  GAFV F   ++G++HISQ++
Sbjct: 605 TISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQIA 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
             RVA+  D +  GD V VK+ + D +G++ L+ K +D
Sbjct: 665 DYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGID 702


>gi|291544643|emb|CBL17752.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. 18P13]
          Length = 706

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/698 (40%), Positives = 434/698 (62%), Gaps = 16/698 (2%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + V +  +AGR L +ETG+    ++G+    YG +VV+A V      ++G DFFPL
Sbjct: 1   MFENYKVFKTMFAGRELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+Y+ER YAVGKIPG +++RE +P+E  IL SRM+DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDYEERLYAVGKIPGSFMKREGKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D + SP ++ M+A S A+ +S +P+ GP+ G  V  ++G+ VLNP L++  +  L+L V
Sbjct: 121 VDPDHSPEIMGMIATSIAISISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRNDLNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVID 233
           +GT   ++M+E  ANQ+ E  ++ AI+ G  E + ++  I  + K   K     E + +D
Sbjct: 181 AGTDKKIVMIEAGANQVDEATMMQAILAGQAENEKMVAFIKDIQKQIGKPKFTFESMEVD 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
              F  ++   S  +K  L  +    +K +R ++++ +K  +   F  ++       I  
Sbjct: 241 HDLFDAIDAFASDRVKFALDTN----DKNIREERLNPIKNDIHEKFDPDYPE-QIAMIDE 295

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
               +Q K+VR  + + K R+DGR  + +R ++A+VG+L R HGS LF RG TQ + V T
Sbjct: 296 CIYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVAT 354

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D Q +D +       +M HYNF   + GE      P RREIGHG LA RA+ PV+
Sbjct: 355 LGPVSDAQRIDGIDEDVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALEPVI 414

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471
           P   +FPY LR+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+   D D
Sbjct: 415 PPVEEFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPDSD 474

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +F+ + DI G ED  G MDFKV GT  GITA+Q+D+K+ G++  I+  AL++ ++ R++I
Sbjct: 475 EFMTMVDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIEEALEKTRKARIYI 534

Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L+E M K +   R  + EF P++    IP D+IR VIG GGKVI+ I  +   K+++++D
Sbjct: 535 LDEIMLKAIPHYRSSVNEFAPKMMQTKIPVDKIREVIGQGGKVIQKISAECEVKIDVNED 594

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G+V I+   L + + A +++ +I   PEV  IYKG+VV++M FGAFV     +DGLVHIS
Sbjct: 595 GSVFISGVDLEKTKKALQIVETIAHDPEVGAIYKGKVVRLMSFGAFVEIAPGKDGLVHIS 654

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +L  +RV K  DVV  GD + VK+++ D +G+I LS K
Sbjct: 655 KLDKDRVEKVEDVVSIGDEIVVKVVEIDKQGRINLSRK 692


>gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
 gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
          Length = 759

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/694 (40%), Positives = 435/694 (62%), Gaps = 22/694 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E  +AGRP  +ETG++   ++G+ +  YG+T VL  V      ++G DFFPL+V ++E+ 
Sbjct: 60  ETTFAGRPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSVEFEEKL 119

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG ++RRE RP E+ IL SR++DR IRPLF K  +N+  V + VM  D ++S  
Sbjct: 120 YAAGRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAE 179

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +  M  AS A+ +S +P+ GP+ G  V  ++G+ VLNP  ++ + S L L ++ +++ ++
Sbjct: 180 ITGMNGASLAIAMSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTLAASEEKIV 239

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  +++AI  GH E K ++  I+ +     K       K F+ +E +   
Sbjct: 240 MIEAGANEVDEATMMEAIKAGHAEIKKMLAFINSIVAEIGKP-----KKTFTPVELDHGL 294

Query: 247 MIK------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +        ++++ +    +K VR    D     ++   ++EH      +I  +   +Q 
Sbjct: 295 LADVYAKHLDEVKAAMDTDDKNVR----DAALLPIMDAIAAEHPELTAADIDLISYKLQK 350

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVRT +L+   R+DGR    +R ++A+VGLL R HGS +F RG TQ + V TLG+ +D 
Sbjct: 351 KVVRTWLLEDGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDA 410

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D LS TQ   ++ HYNF P + GE     +P RREIGHG LA RA+ PVLP  ++FP
Sbjct: 411 QLMDDLSDTQYKRYIHHYNFPPYSVGEARAPRSPGRREIGHGNLAERALVPVLPDQSEFP 470

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-----FII 475
           YT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ DGD      ++ 
Sbjct: 471 YTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITDGDPLHGGRWMT 530

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           + DI G ED  G MDFKV GT  GITA+QMD+K+ G++  I+  AL++ ++GRL+IL+E+
Sbjct: 531 MLDIQGVEDFHGDMDFKVGGTRRGITAIQMDIKVDGLTYEIVEEALEKCRKGRLYILDEI 590

Query: 536 SK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
            K V++E R +L  + P++  M IP D+I++VIG GGKVI+ +      K++I++DG V 
Sbjct: 591 IKPVIAEPRKELSPYAPKMFSMMIPVDKIKDVIGKGGKVIQEMCANFNCKIDIEEDGHVF 650

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I++    + + A   I++I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS+L  
Sbjct: 651 ISAVDQEDAKRAIATIKTIVEDPEIGAIYKGRVTRLMNFGAFVEIAPGKEGLVHISKLDD 710

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            RV    DVV  GD ++V + D D +G+I LS K
Sbjct: 711 HRVEHVEDVVAVGDPIFVMVTDIDQQGRINLSRK 744


>gi|209525615|ref|ZP_03274153.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
           CS-328]
 gi|209493948|gb|EDZ94265.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
           CS-328]
          Length = 720

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 299/698 (42%), Positives = 431/698 (61%), Gaps = 27/698 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GA+L   G+T VL T       + G DF PL V+Y+ER Y
Sbjct: 8   ISFDGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEG-RPGIDFLPLLVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP +   L SR+IDR +RPL     +++ Q++   +  D +  P V
Sbjct: 67  AGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF GP+   +V  +   +++NP   E   G LDL V+G+   V+M
Sbjct: 127 LAVTGASVAVLLARIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGDLDLVVAGSPQGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFSKLEE 242
           VE  AN+L E  V++AI FG+     +I+A +++ +    E  +      D      ++E
Sbjct: 187 VEAGANELPEHDVIEAIDFGYEAVMDLIKAQTEIMQELGIENPIEEPPPEDPTLIEFIQE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-------------SYFSSEHSSWNEG 289
            +++ +K+ L    F   K  R   +D +K++ +             S F++E    N  
Sbjct: 247 RVTEPVKKVL--GQFELTKDERDAALDVIKEEQIVSAIALMPEDDPISLFNTE----NPK 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQA 348
            +  +F+DI  K++R  +L + VR+DGR+ + VR +S +VGLL +R HGS LF RG TQ 
Sbjct: 301 AVGMIFKDITKKLMRQQILSEGVRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQV 360

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + + TLGT  D Q +D L       +M HYNF P + GE   M +P RREIGHG LA RA
Sbjct: 361 LSIATLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETRPMRSPGRREIGHGALAERA 420

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   QFPY +RIVSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K
Sbjct: 421 LLPVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPIVKPVSGAAMGLIK 480

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++  A+ +AK  R
Sbjct: 481 EGSEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVADAIAKAKPAR 540

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL +M +VL + R  L  F PR+  + I PD I  VIG GGK I+GI E+TG K++ID
Sbjct: 541 LHILEKMLEVLPKHRPDLSPFAPRLLTLKIDPDLIGLVIGPGGKTIKGITEETGVKIDID 600

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDGTV IAS+       A ++++ +T       +Y G+V +++  GAFV     ++G++H
Sbjct: 601 DDGTVTIASTDSENAARAYQIVQGMTRKLNAGDVYVGKVTRIIPIGAFVEVLPGKEGMIH 660

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           ISQL+  RV K  D V  GD V VK+ + D +G+I L+
Sbjct: 661 ISQLAEYRVPKVEDEVAVGDEVIVKVREIDPKGRINLT 698


>gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
 gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
          Length = 732

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 297/700 (42%), Positives = 444/700 (63%), Gaps = 21/700 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DG+V+   G+T++LATVV ++  ++G DF PL+V+YQE+  A G+
Sbjct: 15  GRIIEIETGKLAKQADGSVVVKQGDTMLLATVVSNKDAREGVDFLPLSVDYQEKYAASGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y  ETQV+I+++  D    P  ++ +
Sbjct: 75  IPGGFLRREARLSDYEVLISRLVDRALRPLFPEDYHAETQVMISLISSDENIMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PF GP+   +V  I+GQ V+NP R D ++ +L+  V+G++  + MVE E
Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGQLVINPSRTDLERATLEFIVAGSEKDINMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           +N++ E  +++AI F H   K  +    +L     K        + S LE      +K+ 
Sbjct: 195 SNEIQEAELVEAIQFAHEAIKKQVAVQKELTVATGKTEKRTYCHENSDLE------LKDK 248

Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV----SVFEDIQAKV 302
           +  + +     I +  +   +  D    + S F +      E  +V      F D+Q   
Sbjct: 249 VYAATYDKVYAIAKAQLPKHERSDAFATIYSEFEATLGENPEESVVFLAKQYFHDVQYDA 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L++ VR+DGR+S+ +R I ++V  L   HGSS+F RG+TQ++  VTLG+ +DEQ 
Sbjct: 309 VRNLLLNENVRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSNDDEQM 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D    +  N FM+HYNF   +TGE        RRE+GHG LA RAI  VLP   + PY 
Sbjct: 369 IDGAFISGYNRFMLHYNFPAFSTGEARPNRGVGRREVGHGNLAMRAIKKVLPPDNENPYV 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480
           +R+VS+I ES+GSSSMATVC  +LAL+DAG+ IS PV+GIAMGL+ D     + ILSDI 
Sbjct: 429 IRVVSDILESNGSSSMATVCAGTLALLDAGIKISSPVSGIAMGLISDEKTGKYAILSDIL 488

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT +GITA QMD+K+ G+S +++  AL QAK GRLHIL EM+K +S
Sbjct: 489 GDEDHLGDMDFKVTGTKNGITACQMDLKVNGLSYDVLTEALNQAKEGRLHILGEMAKTIS 548

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIAS 597
           E R       PR+  + I  + I  VIG GGK+I+ +  +TGA ++I   D+ G V++ +
Sbjct: 549 EPREDYKPHAPRIVSLTIDKEFIGAVIGPGGKIIQEMQRETGATISIEEKDNKGLVQVFA 608

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++   +++A   I++I   PEV +IY+G+V  +M FGAFV     +DGL+HIS++  +R 
Sbjct: 609 NNKESVDSAVARIKAIAAKPEVGEIYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRY 668

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                + K GD V VKLLD D +GK+KLS K +     KP
Sbjct: 669 ESMDGLFKVGDEVRVKLLDVDKQGKLKLSRKALLPRPPKP 708


>gi|300779041|ref|ZP_07088899.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
           ATCC 35910]
 gi|300504551|gb|EFK35691.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
           ATCC 35910]
          Length = 751

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 304/708 (42%), Positives = 452/708 (63%), Gaps = 38/708 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V+   G T++LATVV ++    G DF PLTV+Y+E+ YA G+
Sbjct: 16  GREITIETGKLAKQADGSVVVKCGGTMLLATVVANKEANPGVDFLPLTVDYREKFYAGGR 75

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE++P+++E+L  R++DR +RPLF + +  E QV+I+++ +D E  P  ++ +
Sbjct: 76  IPGNFFRREAKPSDDEVLTMRLVDRVLRPLFPEDFHAEVQVMISLISYDKEVMPEALAGL 135

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ ++ +PF GP+  A+V  I+G+  +NP  +   +  +D+ V  T+D+++MVE E
Sbjct: 136 AASAAIAITDIPFNGPMSEARVVRIDGELSVNPSYENLLKSDIDIMVGATKDSIVMVEGE 195

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEMSQMI 248
             ++SE  +L+AI F H E +  IEA  +LA    K         F K E   EE  + I
Sbjct: 196 MKEISEQEMLEAINFAHAEIRKQIEAQERLAAKVGKA--------FPKREYNHEEHDEEI 247

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLK-------KKMVSYFSSEHSSWNEGEIVSV------- 294
           +E +   C+  +K     +    K       K ++  F ++++  NE E+  V       
Sbjct: 248 REKVWKECY--DKVYEVAKTPSNKEERGEKFKAVLEEFLAQYAD-NEEELARVTPFVKVY 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++ + +R ++L+  +R+DGRD +T+R I +++  L   HGS++F RG+TQ++  VTL
Sbjct: 305 YHDVEKEAMRQMILEDNIRLDGRDPQTIRPIWSEIDYLPGAHGSAIFTRGETQSLTAVTL 364

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+ +D   +DS+       F +HYNF P +TGE   +   SRRE+GHG LA+RA+  V+P
Sbjct: 365 GSVKDANMIDSVITQHDERFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALTAVIP 424

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDD 472
             A+ PYT+RIVS+I ES+GSSSMATVC  +LALMDAGV I+KPV+GIAMGL+ D     
Sbjct: 425 --AENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLITDTKSGK 482

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G+S +IM  AL QAK GRLHIL
Sbjct: 483 FTVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIQGLSMDIMEKALMQAKDGRLHIL 542

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N++++ +S+ R  +    P++ +M IP D I  VIG GGK+I+ + + T   + I++ G 
Sbjct: 543 NKITETISQPRADVKPHAPKMVVMEIPKDFIGAVIGPGGKIIQQLQKDTDTVIAIEEIGE 602

Query: 593 ---VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              ++IA +   +I AA   I  IT VP V ++YKG+VVKVMDFGAFV      +GL+HI
Sbjct: 603 IGRIEIAGTDREKINAAIAKINEITFVPVVGEVYKGKVVKVMDFGAFVAIAKGTEGLLHI 662

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           S++   R+ K      EGD V VK + +DDR K+KLS KV+     KP
Sbjct: 663 SEIEWARLDKVP--YAEGDEVEVKFMGYDDRKKMKLSRKVLLPRPPKP 708


>gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii
           L2-63]
          Length = 739

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/701 (40%), Positives = 435/701 (62%), Gaps = 18/701 (2%)

Query: 2   FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           FD + V E E+AGRPLK+ETG++ + ++GA L  YG+T V   V      ++G DFFPL+
Sbjct: 7   FDKYRVFETEFAGRPLKVETGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLS 66

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ YAVGKIPG YL+RE RP+E  IL SR+IDR IRPLF K  +N+  ++  VM  
Sbjct: 67  VDYEEKMYAVGKIPGSYLKREGRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSV 126

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +  P +V+M+ AS A+ +S +P+ GP+ G  V  I+G+Y++NP  ++ + S +   V+
Sbjct: 127 DPDCQPEIVAMIGASIAISISDVPWNGPISGCSVGMIDGEYIINPTEEQRKVSQMATTVA 186

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T   + M+E  AN +S+D + +AI+ GH   + +I  I ++     K        +F+ 
Sbjct: 187 STSTRIAMIEAGANCVSDDDMYNAIMAGHEANQKIISFIEEIKAEIGKPKF-----EFAS 241

Query: 240 LE------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           LE      E +    +ED++V+    +K +R +++  + + + + F   +   +E  I  
Sbjct: 242 LEPDHDMFEAIKAFAEEDVKVALDTDDKRIRDERLKPIYEAVHAKFDEIYPE-SEALIDE 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
                Q  +VR  +LD++ R+DGR  + +R ++++VG++ R HGS +F RG TQ + + T
Sbjct: 301 CLYKTQKFIVRRWLLDEQKRVDGRGMDDIRPLASEVGVIPRVHGSGMFTRGQTQVLTIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D+Q +D + G     ++ HYNF   + GE      P RREIGHG LA RA+ PV+
Sbjct: 361 LGPVSDKQLLDGIDGETEKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVI 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY LR+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+ +GD +
Sbjct: 421 PSVEEFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGDRW 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           + + DI G ED  G MDFKVAGT  GITA+QMD+KI G++  ++  AL +  + R +IL+
Sbjct: 481 MTMVDIQGLEDFFGDMDFKVAGTHDGITAIQMDLKISGLTPEMVKEALAKTHKARNYILD 540

Query: 534 E-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
           E M K ++E R +L ++ P++    IP D+I  VIG  GKVI+ I  +   KV+I++D  
Sbjct: 541 EVMLKAIAEPREELSKYAPKMFTTTIPADKISEVIGKSGKVIKEIQAECEVKVDIEEDGE 600

Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V ++     + + A E+I +I   PE   +Y G+V ++MDFGAFV     ++GLVHI
Sbjct: 601 LGQVFVSGIDSDKCKRAIEIINTIAVDPEPGAMYLGKVTRIMDFGAFVEIAPGKEGLVHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SQL  +R    +DVV  GD + VK+++ DD+G++ LS + V
Sbjct: 661 SQLDVKRTENVTDVVNVGDIIRVKVMEIDDKGRLNLSRRQV 701


>gi|300813727|ref|ZP_07094047.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512184|gb|EFK39364.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 722

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 294/688 (42%), Positives = 437/688 (63%), Gaps = 10/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AG  LK+  G++A Q++G  L  YG+TVVL T    +  ++G DFFPL+V+Y+E+ Y
Sbjct: 7   MELAGTELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y+N+ Q++  V+  D +  P +
Sbjct: 67  AVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL LS +PF+GP    QV  ++G+YV+NP  ++ ++  ++L +SGT  A++M
Sbjct: 127 PAMIGSSIALCLSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDINLMLSGTSSAIMM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE  AN +SE+ +L+AI+ GH   K +   I  +     KE          K ++E+   
Sbjct: 187 VEAGANIVSEEQMLNAILTGHEAIKEICHFIDSIVSEIGKEK---SKYILFKPDQEIVDK 243

Query: 248 IKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +K+   D+ V+     +K +R K  D  K ++  +F  +    N  ++ +  E+I+   V
Sbjct: 244 VKDFGTDILVNAIRQKDKVLREKLTDQAKDEIRQHFE-DLMEENSKDVEAAIEEIEVTEV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++++  R DGR  E +R +S++VGLL R HGS LF RG TQ + V  LG   +EQ +
Sbjct: 303 RRGIIEEDRRPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTI 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   ++ HYNF   + G+     +P RREIGHG LA RA+ PV+P   +FPYT+
Sbjct: 363 DGLGDDKPKHYIHHYNFPGFSVGDTKPSRSPGRREIGHGALAERALIPVIPSIEEFPYTI 422

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+  S+GSSS A+VCGS+L+LMDAGVPI  PVAGIAMGL+++     IL+DI G E
Sbjct: 423 RVVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGVTKILTDIQGLE 482

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+K+ GI + I+ +AL++AK  RL IL+ +   + + R
Sbjct: 483 DHFGDMDFKVAGTSEGITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTTIDKPR 542

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             L ++ P + I+ I P++I +VIG GGK I  I+EQTG K++IDDDG V + S    + 
Sbjct: 543 DHLSKYAPIIHIILIDPNKIGDVIGAGGKTINKIIEQTGVKIDIDDDGKVSVLSEDAEKA 602

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A  +I SI    EV   Y G+V K+M FGAFV      +GL+HIS+++ ER  +  DV
Sbjct: 603 KEAISIIESIIKEVEVGDEYLGKVKKIMKFGAFVELKKGTEGLLHISEIAHERTREVGDV 662

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +  GD V VK+++ +D  GKI LS KV+
Sbjct: 663 LHVGDQVKVKVIEINDENGKISLSRKVL 690


>gi|157364256|ref|YP_001471023.1| polynucleotide phosphorylase/polyadenylase [Thermotoga lettingae
           TMO]
 gi|187611328|sp|A8F725|PNP_THELT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157314860|gb|ABV33959.1| Polyribonucleotide nucleotidyltransferase [Thermotoga lettingae
           TMO]
          Length = 710

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 296/686 (43%), Positives = 439/686 (63%), Gaps = 17/686 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E  GR   +E G++A+Q++GAV+A  G+T VLAT V   S  +G DF PLTV +QER YA
Sbjct: 7   EILGREFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSAVEGIDFVPLTVEFQERFYA 66

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE +P+E  IL +R IDR IRPLF K  +NE QV++ V+  D  ++P +V
Sbjct: 67  AGKIPGGFIKREGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVNTPDIV 126

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMV 188
            + AAS AL +S +PF G V   +V  ++G+ VL P  D+ Q SL D+ V+GT+D + MV
Sbjct: 127 GVFAASLALNISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDIVVAGTEDTITMV 186

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247
           E EA ++SE  +L A++  H+  K +I+   ++      E   I  K    ++E+E SQ+
Sbjct: 187 EGEAKEVSESQMLQALLKAHDAIKQIIDFEKEILSYFNIEKAQIAEKTLPEEIEKEFSQL 246

Query: 248 IK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV--- 303
           +   +LR    I  K  R   + +  KK+     + + +    E+  + +D   + +   
Sbjct: 247 LDGNELRERLLIQGKKARSNALSEYFKKIYEILEARYGTEKIEELSVLLKDKYEEALKYK 306

Query: 304 -RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R +++++  R+D R  + +R I+ + GLL R HGS+LF RG+TQ++ +VTLG   DEQ 
Sbjct: 307 MRRIIVEEGTRLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQI 366

Query: 363 VDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           +DSL   GT+R  FM+HYNF P +TGEV  +  PSRREIGHG LA RA+  VLP   +FP
Sbjct: 367 IDSLLEEGTKR--FMLHYNFPPFSTGEVKPLRGPSRREIGHGHLAERALKFVLPDEDRFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RIVSEI ES+GSSSMATVC  SLALMDAGVPISK VAG+AMGL+ + D  I+L+DI 
Sbjct: 425 YTIRIVSEILESNGSSSMATVCSGSLALMDAGVPISKHVAGVAMGLILEKDSQIVLTDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA QMD K+ G+S +++  AL QAK  RL++L ++ + +S
Sbjct: 485 GAEDHWGDMDFKVAGTRDGITAFQMDCKVSGVSADLLERALNQAKEARLYVLEKLYETIS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASSS 599
           + R  L ++ P +++++I P ++  +IG GGK+I+ +++    K+++DD  G V +   +
Sbjct: 545 KPRDTLSKYAPVIKVISIDPSKVAEIIGPGGKIIKALIKDYDVKISVDDLTGKVSVIGGN 604

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             +++AA E I SI     V  ++ G+V ++  FG FV     + GL+H S+L T+   K
Sbjct: 605 EEKVDAAIEQINSILKEISVGDVFSGKVTRIEPFGVFVEISPGKVGLLHQSKLITD--LK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKL 685
           T   VK G+T+ VK+ + D+ G+++L
Sbjct: 663 T---VKIGETMRVKVSNIDNLGRLQL 685


>gi|255531752|ref|YP_003092124.1| polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
           2366]
 gi|255344736|gb|ACU04062.1| Polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
           2366]
          Length = 716

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 297/700 (42%), Positives = 447/700 (63%), Gaps = 21/700 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DGAV+   G+T++LATVV     K G DF PL+V+YQE+  A G+
Sbjct: 13  GRTIEIETGKLAKQADGAVVVKMGDTMLLATVVSTVGAKAGVDFLPLSVDYQEKYAAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE+R ++ E+LISR++DR++RP+F + Y ++TQV+I+++  D    P  ++ +
Sbjct: 73  IPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMISLISSDKNIMPDCLAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PF GP+   +V  I+G++V+NP + D ++  ++  V+GT+  ++MVE E
Sbjct: 133 AASAAIAVSDIPFNGPISEVRVARIDGKFVINPYVTDLERADIEFLVAGTEKDIVMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++SE  +++AI F H      ++A  +LA++  K       +++S   E+ +  +KE 
Sbjct: 193 CNEISETEMVEAIEFAHKAIVIQVQAQKELAELVGKTV----KREYS--HEDSNPELKEQ 246

Query: 252 L------RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS-VFEDIQAKV 302
           +      +V         + ++ D   + ++ + ++     ++  G +    F D+Q   
Sbjct: 247 VYAATYDKVYAIAKSNTSKGERGDAFGQVLMDFIATLGEEIDDVTGFLAKKYFHDVQYDA 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++LD+ +R+DGRD  TVR I ++VG L   HGS++F RG+TQ++  VTLG+++DEQ 
Sbjct: 307 IRNLVLDEGIRLDGRDVRTVRPIWSEVGYLPAAHGSAVFTRGETQSLTTVTLGSKDDEQM 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D       N F++HYNF   +TGEV       RREIGHG LA R++  VLP   + PYT
Sbjct: 367 IDGAFINGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGLEENPYT 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480
           +RIVS+I ES+GSSSMATVC  +LALMDAGV I  PV+GIAMGL+ D     + ILSDI 
Sbjct: 427 IRIVSDILESNGSSSMATVCAGTLALMDAGVKIKAPVSGIAMGLITDEKSGKYAILSDIL 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT+ GI A QMD+KI G+   ++  AL QAK  RLHILNEM K ++
Sbjct: 487 GDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNALNQAKEARLHILNEMKKTIA 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIAS 597
             R       PR+  ++I  + I  VIG GGK+I+ +  +TGA ++I+   + G V+I +
Sbjct: 547 APREDYKAHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVGNKGIVEIFA 606

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A I+AA   I +I   PE+   Y+G+V  +M FGAFV     +DGL+HIS++   R+
Sbjct: 607 DNKAAIDAAVGRINAIAAKPEIGATYQGKVKSIMPFGAFVEIMPGKDGLLHISEIDWTRL 666

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                V KEGD V VKLLD D +GK+KLS K +     KP
Sbjct: 667 ETMDGVFKEGDKVEVKLLDVDKQGKMKLSRKALLPRPPKP 706



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 44/226 (19%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY---------DRSLKDG 53
           DV TV      RP+  E G +   + G+ + T GET  L TV           D +  +G
Sbjct: 322 DVRTV------RPIWSEVGYLP-AAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFING 374

Query: 54  QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN----EILISRMIDRSIRPLFSKCYKN 109
            + F L  N+            G+   E RP       EI    +  RS++ +     +N
Sbjct: 375 YNKFLLHYNFP-----------GFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGLEEN 423

Query: 110 ETQVIINVMQHDLES--SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI----NGQYVL 163
                I ++   LES  S  + ++ A + ALM +G+  + PV G  +  I    +G+Y +
Sbjct: 424 --PYTIRIVSDILESNGSSSMATVCAGTLALMDAGVKIKAPVSGIAMGLITDEKSGKYAI 481

Query: 164 NPRL--DEDQ-GSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAI 204
              +  DED  G +D  V+GT+  ++   ++L+ N L  +V+ +A+
Sbjct: 482 LSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNAL 527


>gi|282882000|ref|ZP_06290641.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|281298030|gb|EFA90485.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
          Length = 722

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/688 (42%), Positives = 437/688 (63%), Gaps = 10/688 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AG  LK+  G++A Q++G  L  YG+TVVL T    +  ++G DFFPL+V+Y+E+ Y
Sbjct: 7   MELAGTELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y+N+ Q++  V+  D +  P +
Sbjct: 67  AVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
            +M+ +S AL LS +PF+GP    QV  ++G+YV+NP  ++ ++  ++L +SGT  A++M
Sbjct: 127 PAMIGSSIALCLSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDINLMLSGTSSAIMM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           VE  AN +SE+ +L+AI+ GH   K +   I  +     KE          K ++E+   
Sbjct: 187 VEAGANIVSEEQMLNAILTGHEAIKEICHFIDSIVSEIGKEK---SKYILFKPDQEIVDK 243

Query: 248 IKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +K+   D+ V+     +K VR K  D  K ++  +F  +    N  ++ +  E+I+   V
Sbjct: 244 VKDFGTDILVNAIRQKDKVVREKLTDQAKDEIRQHFE-DLMEENSKDVEAAIEEIEVTEV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++++  R DGR  E +R +S++VGLL R HGS LF RG TQ + V  LG   +EQ +
Sbjct: 303 RRGIIEEDRRPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTI 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   ++ HYNF   + G+     +P RREIGHG LA RA+ PV+P   +FPYT+
Sbjct: 363 DGLGDDKPKHYIHHYNFPGFSVGDTKPSRSPGRREIGHGALAERALIPVIPSIEEFPYTI 422

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+  S+GSSS A+VCGS+L+LMDAGVPI  PVAGIAMGL+++     IL+DI G E
Sbjct: 423 RVVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGVTKILTDIQGLE 482

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA+QMD+K+ GI + I+ +AL++AK  RL IL+ +   + + R
Sbjct: 483 DHFGDMDFKVAGTREGITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTTIDKPR 542

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             L ++ P + I+ I P++I +VIG GGK I  I+EQTG K++IDDDG V + S    + 
Sbjct: 543 DHLSKYAPIIHIILIDPNKIGDVIGAGGKTINKIIEQTGVKIDIDDDGKVSVLSEDAEKA 602

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A  +I SI    EV   Y G+V K+M FGAFV      +GL+HIS+++ ER  +  DV
Sbjct: 603 KEAISIIESIIKEVEVGDEYLGKVKKIMKFGAFVELKKGTEGLLHISEIAHERTREVGDV 662

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +  GD + VK+++ +D  GKI LS KV+
Sbjct: 663 LHVGDQLKVKVIEINDENGKISLSRKVL 690


>gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
 gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
          Length = 716

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 281/692 (40%), Positives = 427/692 (61%), Gaps = 7/692 (1%)

Query: 2   FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           F  H + + E AGRP  +E G+ A  ++ A L  YG+T V   +      +DG DFFPL+
Sbjct: 10  FPNHKIFKTEIAGRPFSIEVGKTAELANAAALVRYGDTTVHVAICVSPRPRDGVDFFPLS 69

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ YAVG+IPG ++RRE RP+   +L SR+IDR IRPLF   ++N+  +   VM  
Sbjct: 70  VDFEEKLYAVGRIPGSFMRREGRPSLPAVLASRLIDRPIRPLFPYDFRNDVCITCTVMSV 129

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP V +M+  SA L  S +PF GP+   +V Y +G+ V NP  ++ + S +D+ V+
Sbjct: 130 DYDCSPEVTAMIGVSACLSYSEIPFAGPIGCLEVGYCDGEIVFNPTQEQRKTSRMDVTVA 189

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+  V+M+E  A+Q+ +D++ + I+  H E K  +  I+ +     K  +  D  DF++
Sbjct: 190 ATEKKVVMIEAGADQIPDDIMYEGIVKAHEEIKKQVAFINGIVSQIGKPKMEYDHADFNQ 249

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L +++     ++ + +    +K +R ++ + +  K    +  E+   ++  +       
Sbjct: 250 ELFDKIVDKYMDEAKAAMDTDDKNIREQRWNAMIDKWHEDYLEEYPEMDK-YLEEFTYKF 308

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K+V+  +L    R+DGR    +R +SA+VG+L + HGS LF RG TQ + V TL T  
Sbjct: 309 QKKIVKAWLLQGH-RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLA 367

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q +D++   +   +M HYNF P + GE     + +RRE GHG LA RA+ PVLP   +
Sbjct: 368 ASQKLDTIWEEEEKRYMHHYNFPPYSVGEAKAPRSTNRREYGHGALAERALVPVLPSVDE 427

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILS 477
           FPY +R+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL++D D  F    
Sbjct: 428 FPYAIRVVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDDGSFQTFI 487

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT +GITA+QMD+K  G++  I+  AL+  K  R  IL+E M 
Sbjct: 488 DIQGVEDFHGEMDFKVAGTKAGITAIQMDLKNDGLTHEIIKQALEITKDARYAILDEIML 547

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R ++ ++ P++  M I  D+IR VIG GG VI+ I  ++GA V+IDDDGT+ IA
Sbjct: 548 PCIAEPRPEVSKYAPKMITMKIDVDKIREVIGKGGSVIQKICAESGATVDIDDDGTIHIA 607

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S +    +AA++MI +I  VPEV ++Y G+VV+++ FGAFV     +DG+VHIS+L+  R
Sbjct: 608 SPNAEACDAAKKMIDTIVFVPEVGQLYYGKVVRILTFGAFVELAPGKDGMVHISKLADRR 667

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K  DVV  GD +WVK+ D D++G++ LS K
Sbjct: 668 VEKVEDVVNIGDMIWVKVTDIDEKGRVNLSYK 699


>gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
 gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
          Length = 580

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/569 (47%), Positives = 388/569 (68%), Gaps = 7/569 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ YA
Sbjct: 11  EWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D + SP + 
Sbjct: 70  AGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E + S LDL V+G +DAV MV
Sbjct: 130 AMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVNMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK--MCAKEPIVIDSKDFSKLEEEMSQ 246
           E  A++++E  +L+AI FGH E + +++   ++       K+  +   +D + +E   S 
Sbjct: 190 EAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDEALVERVKSL 249

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
             ++ L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  ++  + V
Sbjct: 250 TEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILNELVKEEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG   D Q +
Sbjct: 310 RRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLI 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P TA FPYT+
Sbjct: 370 DGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL+DI G E
Sbjct: 430 RIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M + + + R
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
            +L  + P+V  M I PD+IR+VIG GGK
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGK 578


>gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 719

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/693 (42%), Positives = 439/693 (63%), Gaps = 19/693 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + +ETG++A+Q+DG+V+   G TV+LATVV     KDG DF PLTV+Y+E+  A G+
Sbjct: 13  GKEISIETGKLAKQADGSVVLQMGNTVLLATVVAAPEAKDGVDFLPLTVDYREKYAAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE+RP+E EIL+ R++DR++RPLF   Y  E Q++I ++ +D  ++P  +  +
Sbjct: 73  FPGGFFRREARPSETEILVMRLVDRALRPLFPDDYHAEVQLMIQLLSYDGVNNPDALCGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PF GP+   +V  ING++++NP ++E + + +D+ V+GT   V M+E E
Sbjct: 133 AASAAIAVSDIPFNGPMSEVRVGRINGEWIVNPSMEEMKSADIDMMVAGTMKDVNMIEGE 192

Query: 192 ANQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLEEEM 244
             ++SE  +++AI   H     +C+  ++  + +     K     ++ D    +K+ E  
Sbjct: 193 FQEISELEMVEAIKIAHAAIKEQCQFQLDLAALIPTANPKRVYSHETHDENVKAKVYELA 252

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
               KE  R    +  K  R +  D +K ++ + FS E  +   G I + F +++ K VR
Sbjct: 253 MDKCKEVARQG--LANKAKRTELFDAIKTEVKAAFSEEELATVSGFISTYFSEVKKKAVR 310

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            VML+++ R+DGR  + +R I A+V  L   HGS++F RG+TQ++  +TLG + DEQ +D
Sbjct: 311 WVMLNEQKRLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTLGGKMDEQLID 370

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            ++      F++HYNF P +TGE   +   SRREIGHG LA RA+ PVLP  A   YT+R
Sbjct: 371 GVTFHGTEKFLLHYNFPPFSTGEAKPLRGTSRREIGHGNLALRALKPVLP--ADNAYTIR 428

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VS+I ES+GSSSMATVC  +LALMD GV I  PV+GIAMGLV D   F +LSDI GDED
Sbjct: 429 LVSDILESNGSSSMATVCAGTLALMDGGVQIKAPVSGIAMGLVADEGKFAVLSDILGDED 488

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+K+ G+   +++ AL QA+ GR+HILN++ + ++    
Sbjct: 489 HLGDMDFKVTGTSKGITACQMDIKVDGLPYEVLIQALDQARAGRIHILNKIIETIAVPNP 548

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD----DGTVKIASSSL 600
                TPR+E   +P D I  +IG GGK+I+GI + T   + I++    +G V+I S++ 
Sbjct: 549 DFKPQTPRIEAFNVPNDMIGAIIGPGGKIIQGIQKDTKTTITIEELETGEGRVQIMSNNA 608

Query: 601 AEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            +++AA   IR I   P V++   Y+G+V  + DFG FV      DGL+HIS+ S E+VA
Sbjct: 609 EDMDAANSRIRMIAFPPVVDEGAEYEGKVKAIKDFGVFVEILPGTDGLIHISEFSWEKVA 668

Query: 659 KTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           K  DVVKEGD +  K++  D +  K KLS +V+
Sbjct: 669 KMEDVVKEGDVLKFKVVGKDPKTKKWKLSRRVL 701


>gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CB0101]
          Length = 715

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 297/704 (42%), Positives = 423/704 (60%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT  I + GR ++L TGR A Q+ G+V+   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   HTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRESRP E   LI+R+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+++  AS A +L+ +PF GP+   +V  +   +VLNP   E ++  LDL V+GT +
Sbjct: 123 PPDVLAVTGASLATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A   L K         EP   D     
Sbjct: 183 GVIMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQQALLKELGIEQVIPEPQTTDDTLPK 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGE 290
            LE+E ++ I + L+   F   K  R +Q+D +K ++                 S N   
Sbjct: 243 FLEKECAKGIGDVLKQ--FKLTKAERDEQLDAIKGQVAEKIDGLKDDDAIKVAVSSNGKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + ++ +  K++R  ++    R+DGR+ + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LGNSYKSLTKKLMRDQIVKDGKRVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P +TGE   M +P RREIGHG LA RA+
Sbjct: 361 SCATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSTGETKPMRSPGRREIGHGALAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE   S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPSKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+    +  A+ QA+  RL
Sbjct: 481 GKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLEVKTVAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIEKPREVLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      +++ G V +V+  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFSGAVTRVIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVV+ GD V V++ + D+RG+I L+++ V Q+
Sbjct: 661 SQLSEARVEKVEDVVRVGDQVTVRVREIDNRGRINLTLRGVPQS 704


>gi|281355549|ref|ZP_06242043.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
           ATCC BAA-548]
 gi|281318429|gb|EFB02449.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
           ATCC BAA-548]
          Length = 703

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/690 (42%), Positives = 428/690 (62%), Gaps = 23/690 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +++ TG++A+ ++G+ L   G+T+VL T     + ++G DFFPL V+Y+E+  A GK 
Sbjct: 14  RTMEISTGKVAKLANGSCLVRLGDTIVL-TAACSGAPREGTDFFPLQVDYREKYSAAGKF 72

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PGGY++RE RP+  EIL  RMIDR IRPLF   + +E Q+   ++  D  + P V++MV 
Sbjct: 73  PGGYIKREGRPSTKEILTCRMIDRPIRPLFPDYFFDEVQISSVLLSADGVNEPDVLAMVG 132

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEA 192
           ASA+LMLS LPF+GP+   +V  ++GQ+V+NP R   +Q  L+L  +G  D V+M+E EA
Sbjct: 133 ASASLMLSDLPFQGPIGAVRVGLVDGQFVINPTRAQMEQSKLELIYAGRPDQVIMIEGEA 192

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KLEEEMSQ 246
           + +SE  + +A+   +   K   +A  +LAK   +       K++        L + +  
Sbjct: 193 DFVSEAQMKEAMYLANEAVKKQCDAQIELAKKAGRA-----KKEYKLYPVPEALMKGIEA 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQID----DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
              + +   C IP K  R   +D    D +K +   F+    +    E    F+D+   V
Sbjct: 248 FCADRIEAVCTIPGKEDRMVAMDALRDDARKALREQFADMSDTQFGLETAKGFDDLVRTV 307

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R V+L K+ R DGR +  +R +SA+VG+L   HGS+LF RG+TQA+V+ TLG  +D Q 
Sbjct: 308 TRNVILQKQFRPDGRSTTEIRPLSAEVGVLPVVHGSALFSRGETQALVLATLGNEKDAQE 367

Query: 363 VDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            D L+   G  +  F +HYNF   + GEV R+  P RREIGHG LA R++  V+P+   F
Sbjct: 368 ADDLTSETGITKKRFYLHYNFPNFSVGEVGRITGPGRREIGHGNLAERSVSKVVPK--DF 425

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILSD 478
           PY +R VSEI  S+GS+SMA+VCG++LALMDAGVPIS PVAGI+ GLV  D  + ++L+D
Sbjct: 426 PYVVRCVSEIMSSNGSTSMASVCGATLALMDAGVPISAPVAGISCGLVTGDNGERLLLTD 485

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKV GT  GIT  Q+D+K+ GI  +++   +++ +  R+ IL+ M   
Sbjct: 486 IIGAEDHFGDMDFKVCGTRDGITGFQLDLKLPGIPIDLLCEGMERNRIARMKILDVMEAC 545

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +++ R ++    PR+E++ I P++I  +IG GGK IR I E+TG  ++IDDDG VKI + 
Sbjct: 546 IAKPREEISSRAPRLEVIQINPEKIGALIGPGGKNIRAITEETGTSIDIDDDGNVKIMAP 605

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               +EAA+E I   T   E+ KIY+G+VV V DFGAFV      DGL+HIS+++  RV 
Sbjct: 606 DKEHLEAAKERILGSTAEAEIGKIYRGKVVTVRDFGAFVEILPGVDGLLHISEMADYRVN 665

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K +D+ +EG  V VK++D D  GKI+LS K
Sbjct: 666 KVTDICEEGQFVTVKVIDIDPSGKIRLSRK 695


>gi|255505938|ref|ZP_05349011.3| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
           DSM 14469]
 gi|255265001|gb|EET58206.1| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
           DSM 14469]
          Length = 689

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/694 (41%), Positives = 433/694 (62%), Gaps = 15/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L+++ GR+A+Q++GAVL  YG+T VL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRTLRVDVGRVAKQANGAVLMHYGDTTVLSTATASEKPREGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + SP +
Sbjct: 61  AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNLVLSVDPDCSPEL 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A ++S +PF+GP    QV  +NG++V NP   +   S L L V+ T+D V+M
Sbjct: 121 TAMLGSAIATVISDIPFDGPTSTTQVGLVNGEFVFNPNAAQKAVSDLQLTVASTRDKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEE 242
           +E  AN++ ED +++AI   H   + VI+ I  +   C KE        +  + F+ + E
Sbjct: 181 IEAGANEVPEDKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHTYTSCAVPEELFAAIRE 240

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +S    E++ V+ F  EK  R   I ++K K+   F +++  W      +V++  Q K 
Sbjct: 241 VIS---PEEMEVAVFTDEKQKREANIREIKDKLAEKF-ADNEEWLALIDEAVYQ-YQKKT 295

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   + TL    + Q 
Sbjct: 296 VRKMILKDHKRPDGRAINEIRPLAAEVDLIPRVHGSAMFTRGQTQICTITTLAPLSEAQK 355

Query: 363 VDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +D L  ++ +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FPY
Sbjct: 356 IDGLDASETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFPY 415

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479
            +R VSE  ES+GS+S A++C S+++LM AGVPI   VAGI+ GLV  +  DD+I+L+DI
Sbjct: 416 AIRTVSETFESNGSTSQASICASTMSLMAAGVPIKTAVAGISCGLVTGETDDDYIVLTDI 475

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + +  RL+IL+E M+K 
Sbjct: 476 QGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTREARLYILDEVMAKT 535

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R++L E+ P++  + I P +I +V+G  GK I  I+E+TG K++I DDG V I  +
Sbjct: 536 IAEPRMELSEYAPKIIQINIDPQKIGDVVGQRGKTINTIIERTGVKIDITDDGAVSICGT 595

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              ++  A +M+R IT   E  +I  G VV + +FGAF+ F   ++G+VHIS++S  R+ 
Sbjct: 596 DKEQMARAMDMVRIITTEFEAGQILTGTVVSIKEFGAFLEFAPGKEGMVHISKISKGRID 655

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           K  DV+K GD V V  L  D  G++  SMK V+Q
Sbjct: 656 KVEDVLKLGDVVKVVCLGKDKMGRVSFSMKDVEQ 689


>gi|325681163|ref|ZP_08160693.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
 gi|324107085|gb|EGC01371.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
          Length = 704

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 279/699 (39%), Positives = 438/699 (62%), Gaps = 19/699 (2%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +  T E  +AGRP+ +ETG+    ++G+    YGETVV+A V   +  ++G DFFPL
Sbjct: 1   MFENARTFETTYAGRPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVG+IPG + +RE + ++  IL SR +DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDFEEKMYAVGRIPGSFTKREGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D ++SP +  M+A + A+ +S +P+ GPV    V Y++G+ VLNP L++  +  L+L V
Sbjct: 121 VDPDNSPEITGMIATAIAISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNKLNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +G+ + ++M+E  A ++ +D++L AI  GH E K ++E I  +     K     +S +  
Sbjct: 181 AGSAEKIVMIEAGAEEIPDDLMLKAIETGHAEIKKMVEFIKGIQAEIGKPKFEFESMEVD 240

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEI 291
             L +E+  M+ ED++ +    +K VR         +M   + + H  ++E        +
Sbjct: 241 HDLFDEIEAMVGEDVKKALDTDDKNVR-------DARMQPIYDAVHEKYDEQYPDQGAML 293

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V   +Q K+VR  + + K R+DGR  + +R ++A+VG+L R HGS +F RG TQ + V
Sbjct: 294 EEVLYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTV 352

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG   D Q +D L       +M  YNF   + GE      P RREIGHG LA RA+ P
Sbjct: 353 CTLGPISDAQKLDGLDEETSKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALVP 412

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDG 470
           VLP   +FPY +R VSE+  S+GS+S  ++CGS+LALMDAGVPI +PVAGI+ GL+ K+ 
Sbjct: 413 VLPSVEEFPYAIRCVSEVLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKED 472

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             ++ + DI G ED  G MDFKV GT +GITA+Q+D+K+ G++ +I+  A ++ ++ R++
Sbjct: 473 GSWMTMVDIQGLEDFYGDMDFKVGGTKNGITAIQVDIKVDGLTMDIIASAFEKTRKARMY 532

Query: 531 ILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           IL+E M K + E R ++ ++ P++    +P D+IR VIG GGKVI+ I  +   K++I++
Sbjct: 533 ILDEIMLKAIPEVRPEVSKWAPKMLTTKVPVDKIREVIGSGGKVIQKISAECEVKIDINE 592

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG+V ++     + + A  +I +I + PE+  IYKG+VV++M+FGAFV     +DGLVHI
Sbjct: 593 DGSVFVSGLDKEKAQQAINIINTIANDPEIGAIYKGKVVRIMNFGAFVEIAPGKDGLVHI 652

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           S+L  +RV K  DVV  GD + VK+++ DD+G+I LS K
Sbjct: 653 SKLDKQRVEKVEDVVSIGDEIVVKVMEIDDQGRINLSRK 691


>gi|126660748|ref|ZP_01731846.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
 gi|126617989|gb|EAZ88760.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
          Length = 715

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 299/695 (43%), Positives = 440/695 (63%), Gaps = 20/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GAVL   G+T VL T    +  ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTSKG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILISR+IDR +RPLF   +++E Q+I   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRDEIQIIATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++ + +PF GP+   +V  I   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIAVIQAQIPFYGPMAAVRVGLIGDDFIINPTYREVESGDLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I A    + +L  K+   EP  +D      + +
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIGAQYDIMEELGMKLVKAEPPGVDEALEKFISD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------HSSWNEGEIVS 293
             +  IK+ L    +   K  R   +D++K+  +    +E          ++ +   +  
Sbjct: 247 RAADSIKKVL--VQYDLGKAERDTALDNIKETAIEEVIAELPEEDPIKVTTTEDPKAVGK 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
           V++ +  K++R+ ++D+ +R+DGR  + VR IS +VGLL  R HGS+LF RG TQ   + 
Sbjct: 305 VYKGLTKKLMRSQIVDEGIRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLA 364

Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q + D L       ++ HYNF P + GE   + +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAITP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+++G 
Sbjct: 425 VLPPQDEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIREGK 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A++QA   RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKITGLSMDVVAKAIEQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   + + R +L  F PR+  M I P+QI  VIG GGK I+ I EQTG+K++I DDG
Sbjct: 545 LEKMLGAIDQPRPELSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+    + E AR++I ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIAAIQAKKAERARDLIFNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV K  + V  GD V VK+ + D++G++ L+
Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLT 699


>gi|326335448|ref|ZP_08201635.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692214|gb|EGD34166.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 725

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/679 (41%), Positives = 426/679 (62%), Gaps = 14/679 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+   G  ++LATVV ++   +G DF PLTV+Y+E+  A G+
Sbjct: 15  GRTISIETGKLAKQADGAVVVRMGNAMLLATVVANKEPGEGVDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RESRP++ EIL  R++DR +RPLF + Y  E QV+I +M HD    P  ++ +
Sbjct: 75  FPGGFFKRESRPSDQEILTMRLVDRVLRPLFPEEYYCEVQVMIQLMSHDENVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASA L +S +PF+GP+   +V  INGQ+V+NP   E  Q  +D+ V  +++ V MVE E
Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRINGQFVINPNAKELTQSDMDIMVGASKEFVAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  + DAI F H   K  IEA  +L     K   V+ + +  +  +E++Q I + 
Sbjct: 195 MDEVSEKDMADAIRFAHEAIKTQIEAQERLKAKVGK---VLRAYEVPQENKEVAQKIYDF 251

Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
               C+        K+ R  + D +K++  + F+ E        +   F   Q + VR +
Sbjct: 252 CYDKCYAIAKENTTKHERNDKFDAVKEECKALFTEEELEEYSALVNKYFSKAQKEAVRNL 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L++ +R+DGR+++ +R I  +VG L   HGSS+F RG+TQA+  VTLGT  +   +D  
Sbjct: 312 ILNEDIRLDGRNTKQIRPIWCEVGYLPSPHGSSIFTRGETQALATVTLGTSREANVIDIP 371

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P+    PYT+R+V
Sbjct: 372 SEQSEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PYTVRVV 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEI ES+GSSSMATVC  +LALMDAG+ + KPV+GIAMGL+ DGD + +LSDI GDEDHL
Sbjct: 430 SEILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAVLSDILGDEDHL 489

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT  GITA QMD+KI G++  I+  AL+QA+ GR++IL +++  ++     +
Sbjct: 490 GDMDFKVTGTKDGITACQMDIKIKGLTYEILEKALEQAREGRMYILGKITDTIAVPNPTV 549

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
               P++  + +P + I   IG GGK I+ + E+T   + +++ G + I      + E  
Sbjct: 550 KPHAPKIIRLEMPKEYIGAFIGTGGKNIQDLQERTKTTIVVEELGELGIVEILGTDTEGI 609

Query: 607 REMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +E + ++  V   P   +IYK +V +++DFGAFV F   +D L+H+S+++ ERV K SDV
Sbjct: 610 QEAVDAVYHVSFEPVEGEIYKVRVARLVDFGAFVEFVPGKDSLLHVSEIAWERVEKPSDV 669

Query: 664 VKEGDTVWVKLLDFDDRGK 682
           +KEGD + VK L  D + K
Sbjct: 670 LKEGDIIEVKYLGIDPKTK 688


>gi|254425324|ref|ZP_05039042.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
 gi|196192813|gb|EDX87777.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
          Length = 716

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 295/693 (42%), Positives = 430/693 (62%), Gaps = 18/693 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I   GR ++L+ G  A Q+ G+VL + G+T VL T     S ++G DF PL V+Y+ER Y
Sbjct: 8   ISIDGRDIQLKAGLFAPQAGGSVLISSGDTAVLVTATRS-SGREGIDFLPLLVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E   L SR+IDR +RPLF +  +++ Q++   +  D +  P V
Sbjct: 67  AAGRIPGGFLRREGRPPERATLTSRLIDRPMRPLFPQWIRDDIQIVATTLSMDEDVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           ++   AS A++L+ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAATGASIAVLLAEIPFNGPMATVRVGLVGDDFIINPTYQEIENGELDLIVAGSPDGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPI-VIDSKDFSKLEE 242
           VE  ANQL E  V++AI FG+   + +I+A    + +L      EP  V D    + L +
Sbjct: 187 VEAGANQLPEQDVIEAIDFGYEVVRDLIQAQLDLVEELGLERPTEPAPVADPSLEAFLSD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVSV 294
             +  IKE L+   F   K  R  ++D +K  +    +++            N   +   
Sbjct: 247 RATADIKEVLK--QFDQSKSERDSKLDAIKATIAEEIAAKDEDDAVRIAIDSNSKALGKS 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R+ +L++ VR+DGR  + +R I+ + G+L  R HG+ LF RG TQ + V T
Sbjct: 305 FKSLTKKLMRSQILEEGVRVDGRKLDEIRKITCRTGVLPTRVHGTGLFRRGLTQVLSVTT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L   +   ++ HYNF P + GE   M +P RRE+GHG LA RA+ PVL
Sbjct: 365 LGTPGDAQMMDDLHPGEEKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALIPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY +R+VSE   S+GS+SM +VCGS+L+LMDAGVPI +PV+G AMGL+++GD+ 
Sbjct: 425 PSQEDFPYVIRVVSECLSSNGSTSMGSVCGSTLSLMDAGVPIMQPVSGAAMGLIREGDEV 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI G ED LG MDFKVAGT+SGITA+Q+DMKI G+   ++  A+ QA+  RLHIL 
Sbjct: 485 RILSDIQGIEDFLGDMDFKVAGTESGITALQLDMKITGLPMEVIGEAINQARPARLHILE 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   L + R ++  + PR+  M + PDQI  VIG GGK I+ I E TGAKV+I+DDGTV
Sbjct: 545 KMLGELDKPRTEVSPYAPRLLTMQVKPDQIGMVIGPGGKQIKAITEATGAKVDIEDDGTV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I++    + + A++MI  IT VPE   +Y G+V +V+  GAFV     ++G++HISQL+
Sbjct: 605 TISAVDSDKAKQAQKMIEGITHVPEAGNVYMGKVTRVIPIGAFVEIMPGKEGMIHISQLA 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
             RV K  D V   D V VK+ + D+RG++ L+
Sbjct: 665 DYRVNKVEDEVDVDDEVLVKVREIDNRGRVNLT 697


>gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
 gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
          Length = 719

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/694 (42%), Positives = 426/694 (61%), Gaps = 19/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GAVL   G+T VL T       + G DF PL V+Y+ER Y
Sbjct: 8   ISFDGRDIRLKIGLLAPQAGGAVLIESGDTSVLVTATRAEG-RPGIDFLPLLVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP +   L SR+IDR +RPL     +++ Q++   +  D +  P V
Sbjct: 67  AGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++++ +PF GP+   +V  +   +++NP   E   G LDL V+G+ + V+M
Sbjct: 127 LAVTGASVAVVMAQIPFYGPMAAVRVGLLGDDFIINPTYREVRNGDLDLVVAGSPEGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+     +I+A  ++AK     +   E    D+     + E
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVCDLIKAQQEIAKELNIDITPGESPQEDTTLVEFIRE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVS 293
             ++ IK+ L    F   K  R   +D++K   V    +E           S +   I  
Sbjct: 247 RTTEPIKQVLTQYHF--AKSERDAALDEIKHTQVEEPLAEKPEDDPLQVLISEDPKAISR 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
           +F+D+  + +R  ++   +R+DGR+ + VR +S +VG L +R HGS LF RG TQ + + 
Sbjct: 305 IFKDVTREFMRQQIVQDSIRVDGRNLDQVRPVSCRVGFLPKRVHGSGLFNRGLTQVLSIA 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L       +M HYNF P + GE   M +P RREIGHG LA RA+ PV
Sbjct: 365 TLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETKPMRSPGRREIGHGALAERALLPV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   QFPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI+KPV+G AMGL+K+G++
Sbjct: 425 LPVKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPITKPVSGAAMGLIKEGEE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++  A+ QAK  RLHIL
Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVIAKAIHQAKPARLHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M + + + R  L  F PR+  M I PD I  VIG GGK I+GI E+TG K++IDDDGT
Sbjct: 545 ESMLEAIQKPRSDLSPFAPRLLTMKIDPDLIGLVIGPGGKTIKGITEETGVKIDIDDDGT 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS+   +   A ++I+ +T       +Y G++ +++  GAFV     ++G++HISQL
Sbjct: 605 VTIASTDSDKAARACQIIQGMTRKLNEGDVYVGRITRIIPIGAFVEVLPGKEGMIHISQL 664

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV +  D V  GD V VK+ + D +G+I L+
Sbjct: 665 ADYRVPRVEDEVAIGDEVIVKVREIDSKGRINLT 698



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 24/203 (11%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVDSL 366
           +D+ +  DGRD      I  ++GLL    G ++ I  GDT  +V  T    E    +D L
Sbjct: 4   MDRSISFDGRD------IRLKIGLLAPQAGGAVLIESGDTSVLVTATRA--EGRPGIDFL 55

Query: 367 SGTQRNDFMMHYNFLPCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
                   ++ Y     A G +      R G P  R     RL  R + P++P   +   
Sbjct: 56  P------LLVDYEERLYAGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDI 109

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +   +   +      +  V G+S+A++ A +P   P+A + +GL+  GDDFII  + + 
Sbjct: 110 QIVATTLSMDEQVPPDVLAVTGASVAVVMAQIPFYGPMAAVRVGLL--GDDFII--NPTY 165

Query: 482 DEDHLGHMDFKVAGTDSGITAMQ 504
            E   G +D  VAG+  G+  ++
Sbjct: 166 REVRNGDLDLVVAGSPEGVVMVE 188


>gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri]
          Length = 702

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/693 (42%), Positives = 439/693 (63%), Gaps = 33/693 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L +E G++A+Q+ G+VL  YG+TVVL T   +  L +  DFFPLTV +QE+ Y+VGKIPG
Sbjct: 15  LIVEHGQLAKQASGSVLVRYGDTVVLVTATVNNKLSE-VDFFPLTVVFQEKLYSVGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RE +P+E   L +R+IDR++RPLFS+ ++NE Q++INV+  D ++   +VS+ AAS
Sbjct: 74  GFLKREGKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDNDNDVRMVSLFAAS 133

Query: 136 AALMLSGLPFEGPVVGA--QVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
            AL +S +PF GPV GA   VD  N   ++NP L++ + G ++L V+GT +A+ MVE  A
Sbjct: 134 LALSISKIPFAGPVAGALVTVDQKNN-IIINPTLEQINDGQMELIVAGTDEAINMVEAGA 192

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE-- 250
            ++SE+++L AI+ GH+    VI+      ++ A +  +I      K+E E+ Q+  E  
Sbjct: 193 KEVSENLMLQAILAGHD----VIQ------QLIAFQHEIIAKVGVPKMEVELFQVRPEII 242

Query: 251 ---------DLRVSCFIPEKYVRCKQIDDLKKKMVSYF------SSEHSSWNEGEIVSVF 295
                    DL  +  I EK  R + I+ L ++ +  +      S +       E+ +  
Sbjct: 243 TYVNNNYAKDLITAARIKEKTKRYETIEHLIEQAIKNYPMPVSLSEKEQKQLTVELKTAL 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +I  + VR  +L  K R+DGR  + +R +S+++ +L   HGS+LF RG+TQ + VVTLG
Sbjct: 303 HNIIRQEVRRQILIDKTRLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D ++  +   FM HYNF   + GE  RMG PSRREIGHG L  + +  ++P 
Sbjct: 363 ALGENQIIDGITDEESKRFMHHYNFPAFSVGETGRMGPPSRREIGHGALGEKVLLQIIPS 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+RIVSE+ ES+GS+S A++C ++LALM AGVPI+ PV GIAMGL+K+ +++ I
Sbjct: 423 EKVFPYTIRIVSEVLESNGSTSQASICAATLALMAAGVPITAPVVGIAMGLIKEKNNYTI 482

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGT +GI A+QMD+KI GI++ I+  AL+ AK+ RL IL+ +
Sbjct: 483 LTDIQGMEDHLGDMDFKVAGTATGICALQMDIKIVGINKAILQEALKAAKKARLTILDNV 542

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVK 594
              +S  R  L    P+++   IP D+IR VIG GGK+I  I+E++   K++I+DDG V 
Sbjct: 543 LATISAPRTHLAPTAPKMKTFMIPVDKIREVIGPGGKMITAIIEKSDDVKIDIEDDGQVT 602

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I       IE A ++I++I     V +   G VVK+  FG FVH     DGL+HIS+L+ 
Sbjct: 603 IYHKETTAIEKAYQLIKAIAMPVVVGEKIIGPVVKIEKFGVFVHLKENLDGLIHISKLAK 662

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           + V K  D+V+  D V VK+++ D +GKIKL +
Sbjct: 663 QHVEKAEDIVQLNDIVKVKVIEIDGKGKIKLQL 695


>gi|187471099|sp|B0C1M5|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 716

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/689 (41%), Positives = 427/689 (61%), Gaps = 18/689 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +KL  GR A Q+ G VL   GET VL T     S ++G DF PL V+Y+ER YA G+
Sbjct: 12  GREIKLTIGRFAPQAGGCVLIESGETSVLVTATRS-SGREGIDFLPLLVDYEERLYAAGR 70

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           +PGG+LRRE RP E   L  R+IDR +RPLF    +++ Q++   +  D +  P V+++ 
Sbjct: 71  VPGGFLRREGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDVLAVT 130

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS A +L+ +PF+GP+   +V  +   +++NP  +E  +G LDL V+G+ D V+MVE  
Sbjct: 131 GASVATLLAKIPFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLVVAGSPDGVIMVEAG 190

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQ 246
           AN+++E  +++AI FG+     +I+A  +L      E +       D    + ++E ++ 
Sbjct: 191 ANEVAEQDMIEAIDFGYEVVCDLIKAQKELIAELGIEQVEEAAPETDPTLENFVQERVTD 250

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVSVFEDI 298
            +K+ L  + F  +K VR   +D++K+ +         +         N   I  VF+ I
Sbjct: 251 PVKDVL--ARFEKDKNVRDAALDEIKESVKVAIDELPETDPVQVAAVENPKAIGKVFKSI 308

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTR 357
              ++R  +++ KVR+DGR  + VR IS  VG+L QR HGS LF RG TQ + + TLGT 
Sbjct: 309 TKTLMRRQVVEDKVRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTP 368

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  ++ HYNF P + GE   M +P RRE+GHG LA RA+ P+LP   
Sbjct: 369 GDAQEMDDLHPDSQKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALLPMLPSKE 428

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY LR+VSE+  S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+G++  +L+
Sbjct: 429 EFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLT 488

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKVAGT  GITA+QMDMKI G+S  ++  A+ QAK  RLHIL++M  
Sbjct: 489 DIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLSMKVIAEAIHQAKPARLHILDKMLA 548

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  +  + PR+  + I P+QI  +IG GGK I+GI E+TGAK++I+DDG V I++
Sbjct: 549 TIDSPRETMSPYAPRLLTIKIDPEQIGMIIGPGGKTIKGITEETGAKIDIEDDGRVTISA 608

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                   AR++I  +T       ++ G+V +++  GAFV    +++G++HISQL+  RV
Sbjct: 609 VDEKAASRARQIIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRV 668

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            K  D V  GD V VK+ + D+RG+I L+
Sbjct: 669 GKVEDEVTVGDEVVVKIRELDNRGRINLT 697


>gi|186683767|ref|YP_001866963.1| polynucleotide phosphorylase/polyadenylase [Nostoc punctiforme PCC
           73102]
 gi|226702669|sp|B2J2V3|PNP_NOSP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186466219|gb|ACC82020.1| 3' exoribonuclease [Nostoc punctiforme PCC 73102]
          Length = 718

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 292/692 (42%), Positives = 429/692 (61%), Gaps = 15/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T    ++ ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSQA-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q+I   +  D    P V
Sbjct: 67  AAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V+M
Sbjct: 127 LAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKE-PIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A    +++L  +  +E P  +D    + + +
Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIKAQQDLVAELGLVIVQEAPPEVDQTLENYIRD 246

Query: 243 EMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEIVSVFE 296
             S  IK+ L    F  PE+      + D     +     E      ++ N   + + F+
Sbjct: 247 RASGQIKKILSQFTFTKPERDAALDVVKDEIATTIKELPEEDPIRVAATANNKALGNTFK 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLG 355
           DI    +R  +++  VR+DGR  + VR +S  VG+L +R HGS LF R  TQ +   TLG
Sbjct: 307 DITKYFMRRQIIEDNVRVDGRKLDEVRRVSCLVGVLPKRVHGSGLFNRELTQVLSTCTLG 366

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           T  D Q + D +   Q   ++ HYNF P + GE   M +P RREIGHG LA R++ PVLP
Sbjct: 367 TPGDAQNLNDDMQLDQHKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERSLIPVLP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPY +RIVSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+KDGD+  
Sbjct: 427 SKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKDGDEVR 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A+ QAK  RLHIL +
Sbjct: 487 ILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKIPGLSLDVISQAVHQAKAARLHILEK 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   +   R++   + PR+  + I  D I  VIG GGK I+GI E+TGAK++I+DDGTV 
Sbjct: 547 MLACIDTPRIETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIEDDGTVT 606

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I++    + + AR +I+ +T       +Y G++ +++  GAFV F   ++G++HISQL+ 
Sbjct: 607 ISAVDENKAKRARNIIQGMTRKLHEGDVYAGRITRIIPIGAFVEFLPGKEGMIHISQLAD 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            RV K  D V  GD V +K+ + D++G+I L+
Sbjct: 667 YRVGKVEDEVAVGDEVIIKVREIDNKGRINLT 698


>gi|323692624|ref|ZP_08106856.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323503321|gb|EGB19151.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 707

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/697 (41%), Positives = 428/697 (61%), Gaps = 19/697 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E  GR L ++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V ++E+ Y
Sbjct: 7   MELGGRTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  D + SP  
Sbjct: 67  AVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
            +M+ A+ A  +S +PF+GP    Q+  I+G++++NP  L +    L L V+ T++ V+M
Sbjct: 127 TAMLGAAIATCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSDLALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED+VL AI   H+  + +I+ I  +   C K     +S     + EE+   
Sbjct: 187 IEAGANEVPEDIVLQAIFKAHDINQEIIKFIDTIVAECGKPKHTYES---CAVPEELFAA 243

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IKE     ++  + F  EK  R + I  +  ++   F +++  W    GE V  +   Q 
Sbjct: 244 IKEIVPPAEMEEAVFTDEKQKREENIKAITARLEEAF-ADNEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A++ +L R HGS +F RG TQ + + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   +++  +M HYNF   + GE      P RREIGHG LA RA+ PVLP+  +F
Sbjct: 360 QKLDGLDENEKSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPREEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R+HIL++ M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDVMK 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R +L ++ P++E + I P +I +V+G  GKVI  I+EQTG K++IDD GTV + 
Sbjct: 540 PVIAEPRKELSKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDIDDTGTVAVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    I+ A  +I+SI    E  ++  G VV++M+FGAFV     +DG+VHIS+LS +R
Sbjct: 600 GTDKEMIDKALHIIKSIVTDIEPGQVMTGTVVRIMNFGAFVELAPNKDGMVHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V K  DVV  GD V VK+++ D  G+I LSMK  D N
Sbjct: 660 VGKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLN 696


>gi|187611320|sp|Q7UR95|PNP_RHOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 753

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/686 (41%), Positives = 424/686 (61%), Gaps = 7/686 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG IA+Q+ G+VL  YGETVVL       + + G DFFPL  +Y+ER  A GK PG
Sbjct: 17  LSFETGHIAKQAAGSVLVQYGETVVLVAAASG-TPRPGIDFFPLMCDYRERLAAAGKFPG 75

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RE RP+  EIL SR++DR IRPL+   YK+E QV   V+  DL++   V++M+  +
Sbjct: 76  GFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLAMIGGA 135

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
            AL +S LPF+GP+   +V  ++G+ V  P  D+ +Q  LD+ VSG++D V M+E  AN+
Sbjct: 136 TALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVAMIEGFANE 195

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV 254
           + ED +++AI F H+  + VI+   +  K    E     S +   L + ++     D + 
Sbjct: 196 MPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTDAYYSDFKT 255

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVVRTVMLDKK 311
           +     K  R + +  ++ + ++    + ++ +        SV+ D++ KVVR ++L   
Sbjct: 256 AQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVVRDLIL-AG 314

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGRD  ++R I  +  LL R HGS+LF RG+TQA++ + LGT  DEQ VD L     
Sbjct: 315 TRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYS 374

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             FM+ YNF   + GE   +  P RREIGHG LA R++ PVLP    FPYT+R++S+ITE
Sbjct: 375 KKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTIRVISDITE 434

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDHLGHMD 490
           S+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G EDH G MD
Sbjct: 435 SNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGTEDHFGDMD 494

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FK+AGT +GIT +Q+D+K+ G++ +I+   L+Q++  R+ IL +M   +   R ++    
Sbjct: 495 FKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRPRREISPTA 554

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+    I PD+I  +IG GGK IRGI E TGA + +DD+GTV +ASS+    + A   +
Sbjct: 555 PRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKESAQEAMRQV 614

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            + T   ++ KIY G V  + +FGAFV     RDGLVHIS++S   ++    V+  GD +
Sbjct: 615 EACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQVIAVGDAM 674

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V ++D D+  ++KLS +   +  G+
Sbjct: 675 KVLVIDVDEHDRVKLSRRKALEELGE 700


>gi|327537258|gb|EGF23997.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
           WH47]
          Length = 819

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/686 (41%), Positives = 424/686 (61%), Gaps = 7/686 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG IA+Q+ G+VL  YGETVVL       + + G DFFPL  +Y+ER  A GK PG
Sbjct: 82  LSFETGHIAKQAAGSVLVQYGETVVLVAAASG-TPRPGIDFFPLMCDYRERLAAAGKFPG 140

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RE RP+  EIL SR++DR IRPL+   YK+E QV   V+  DL++   V++M+  +
Sbjct: 141 GFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLAMIGGA 200

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
            AL +S LPF+GP+   +V  ++G+ V  P  D+ +Q  LD+ VSG++D V M+E  AN+
Sbjct: 201 TALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVAMIEGFANE 260

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV 254
           + ED +++AI F H+  + VI+   +  K    E     S +   L + ++     D + 
Sbjct: 261 MPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTDAYYSDFKT 320

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVVRTVMLDKK 311
           +     K  R + +  ++ + ++    + ++ +        SV+ D++ KVVR ++L   
Sbjct: 321 AQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVVRDLIL-AG 379

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGRD  ++R I  +  LL R HGS+LF RG+TQA++ + LGT  DEQ VD L     
Sbjct: 380 TRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYS 439

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             FM+ YNF   + GE   +  P RREIGHG LA R++ PVLP    FPYT+R++S+ITE
Sbjct: 440 KKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTIRVISDITE 499

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDHLGHMD 490
           S+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G EDH G MD
Sbjct: 500 SNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGTEDHFGDMD 559

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FK+AGT +GIT +Q+D+K+ G++ +I+   L+Q++  R+ IL +M   +   R ++    
Sbjct: 560 FKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRPRREISPTA 619

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+    I PD+I  +IG GGK IRGI E TGA + +DD+GTV +ASS+    + A   +
Sbjct: 620 PRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKESAQEAMRQV 679

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            + T   ++ KIY G V  + +FGAFV     RDGLVHIS++S   ++    V+  GD +
Sbjct: 680 EACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQVIAVGDAM 739

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V ++D D+  ++KLS +   +  G+
Sbjct: 740 KVLVIDVDEHDRVKLSRRKALEELGE 765


>gi|32473910|ref|NP_866904.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
           SH 1]
 gi|32444447|emb|CAD74445.1| polyribonucleotide nucleotidyltransferase [Rhodopirellula baltica
           SH 1]
          Length = 818

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/686 (41%), Positives = 424/686 (61%), Gaps = 7/686 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG IA+Q+ G+VL  YGETVVL       + + G DFFPL  +Y+ER  A GK PG
Sbjct: 82  LSFETGHIAKQAAGSVLVQYGETVVLVAAASG-TPRPGIDFFPLMCDYRERLAAAGKFPG 140

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+L+RE RP+  EIL SR++DR IRPL+   YK+E QV   V+  DL++   V++M+  +
Sbjct: 141 GFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVLAMIGGA 200

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
            AL +S LPF+GP+   +V  ++G+ V  P  D+ +Q  LD+ VSG++D V M+E  AN+
Sbjct: 201 TALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVAMIEGFANE 260

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV 254
           + ED +++AI F H+  + VI+   +  K    E     S +   L + ++     D + 
Sbjct: 261 MPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTDAYYSDFKT 320

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVVRTVMLDKK 311
           +     K  R + +  ++ + ++    + ++ +        SV+ D++ KVVR ++L   
Sbjct: 321 AQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVVRDLIL-AG 379

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGRD  ++R I  +  LL R HGS+LF RG+TQA++ + LGT  DEQ VD L     
Sbjct: 380 TRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYS 439

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             FM+ YNF   + GE   +  P RREIGHG LA R++ PVLP    FPYT+R++S+ITE
Sbjct: 440 KKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTIRVISDITE 499

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDHLGHMD 490
           S+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G EDH G MD
Sbjct: 500 SNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGTEDHFGDMD 559

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FK+AGT +GIT +Q+D+K+ G++ +I+   L+Q++  R+ IL +M   +   R ++    
Sbjct: 560 FKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRPRREISPTA 619

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+    I PD+I  +IG GGK IRGI E TGA + +DD+GTV +ASS+    + A   +
Sbjct: 620 PRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKESAQEAMRQV 679

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            + T   ++ KIY G V  + +FGAFV     RDGLVHIS++S   ++    V+  GD +
Sbjct: 680 EACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQVIAVGDAM 739

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V ++D D+  ++KLS +   +  G+
Sbjct: 740 KVLVIDVDEHDRVKLSRRKALEELGE 765


>gi|323483661|ref|ZP_08089044.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
           WAL-14163]
 gi|323402997|gb|EGA95312.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
           WAL-14163]
          Length = 707

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/697 (41%), Positives = 427/697 (61%), Gaps = 19/697 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E  GR L ++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V ++E+ Y
Sbjct: 7   MELGGRTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  D + SP  
Sbjct: 67  AVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
            +M+ A+ A  +S +PF+GP    Q+  I+G++++NP  L +    L L V+ T++ V+M
Sbjct: 127 TAMLGAAIATCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSDLALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED+VL AI   H+  + +I+ I  +   C K     +S     + EE+   
Sbjct: 187 IEAGANEVPEDIVLQAIFKAHDINQEIIKFIDTIVAECGKPKHTYES---CAVPEELFAA 243

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IKE     ++  + F  EK  R + I  +  ++   F +++  W    GE V  +   Q 
Sbjct: 244 IKEIVPPAEMEEAVFTDEKQKREENIKAITARLEEAF-ADNEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A++ +L R HGS +F RG TQ + + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   +++  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QKLDGLDENEKSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R+HIL++ M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDVMK 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R +L ++ P++E + I P +I +V+G  GKVI  I+EQTG K++IDD GTV + 
Sbjct: 540 PVIAEPRKELSKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDIDDTGTVAVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    I+ A  +I+SI    E  ++  G VV++M+FGAFV     +DG+VHIS+LS +R
Sbjct: 600 GTDKEMIDKALHIIKSIVTDIEPGQVMTGTVVRIMNFGAFVELAPNKDGMVHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V K  DVV  GD V VK+++ D  G+I LSMK  D N
Sbjct: 660 VGKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLN 696


>gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 574

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/577 (47%), Positives = 383/577 (66%), Gaps = 9/577 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           ++T E    GR   +ETG++A+Q++GAVL  YGETVVL T       ++G DFFPLTV+Y
Sbjct: 1   MYTFETTLGGRSFVVETGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE RP E+ IL SR+IDR IRPLF + Y+N+ Q++  V+  + +
Sbjct: 61  EEKMYAVGKIPGGFIKREGRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           ++P +  M+ AS AL +S +PF GP+ G +V  I+G++V+NP +++ + S L+L V+G+ 
Sbjct: 121 NAPEIAGMIGASCALSISDIPFLGPIAGVRVGRIDGEFVINPTVEQREKSDLNLTVAGSY 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DAV+MVE  AN+LSE+VVLDAI+FGH E K +++   ++ + C KE           + E
Sbjct: 181 DAVMMVEAGANELSEEVVLDAILFGHEEIKRLVKFQQEMMEKCGKEK---HQPKLFTVPE 237

Query: 243 EMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           E+   I E        +    +K  R + + ++K +   +F   +   +  EI  V    
Sbjct: 238 ELVNAIHEYTYDKFDAAVRDADKLRRDEHVAEVKAQAKEHFLELYPEMDM-EIDYVLYKT 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
              +VR ++  +K+R DGR  E VR IS +VG+L RTHGS+LF RG TQ + V TLG   
Sbjct: 297 LKGIVRHMITHEKIRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALG 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D +       ++ HYNF   + GE   M +P RREIGHG LA RA+ PV+P   +
Sbjct: 357 DEQVIDGIGDDTSKRYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSVEE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYTLR+VSE+ ES+GSSSM +VCGS+L+LM AGVPI KPV+G AMGLVKDGD + IL+D
Sbjct: 417 FPYTLRLVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKKPVSGCAMGLVKDGDAYTILTD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+K+ G+S  I+  AL QAKRGR  IL++M + 
Sbjct: 477 IQGMEDALGDMDFKVAGTPDGITAIQMDIKVDGLSREILAAALAQAKRGREFILSKMLEC 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           +SE   +L  + PRV  M IP D+IR+VIG GGK I+
Sbjct: 537 ISEPNKELSPYAPRVNSMKIPTDKIRDVIGPGGKTIK 573


>gi|308233974|ref|ZP_07664711.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
 gi|328944017|ref|ZP_08241482.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
 gi|327491986|gb|EGF23760.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
          Length = 751

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 296/711 (41%), Positives = 437/711 (61%), Gaps = 31/711 (4%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           + E +   +  KLE+G +A+Q+ G  L + G++ V  TVV  +  K+  DFFPLTV++ E
Sbjct: 5   SYEFDLFNKHYKLESGELAKQATGQCLVSCGDSTVNLTVVVSKERKN-YDFFPLTVDFIE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGGYL+RE+RPTE   L +RMIDR IRP F   ++NE Q++   +  D    
Sbjct: 64  KMYAVGRIPGGYLKREARPTEKATLTARMIDRPIRPSFPDGFRNEVQIVAMPLVADQIHP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
              + ++ ASAA+   G+PFEGP+   ++  D   G+Y++NP  +E + S LDL ++G++
Sbjct: 124 VDTICVMGASAAMYTGGVPFEGPLACVRIGRDKTTGEYLVNPTYEERKNSDLDLELAGSE 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN-------ECKPVIEAISKLAKMCAK------EP 229
             + M+E  A ++SED +LDA+ FG         E K        +  +C K      EP
Sbjct: 184 TFISMLEAGAEEISEDDMLDAMAFGQKAIAAFCAEQKNFFAKYEAVNGVCEKKSYELDEP 243

Query: 230 IV-IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           I  + ++ F+  +E MS  +K+         +K  R  +++ LK  +V  F+ +  +  E
Sbjct: 244 IEEVHNRVFAHFDE-MSAALKD--------ADKLSRMDKVEALKAAIVEEFTEDEQAEWE 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I +  + ++   +R ++++   R+DGR +  VR +  +   L   HGS LF RG TQ 
Sbjct: 295 LAIPAELKSLEKHAMRKMVVETGERVDGRSATEVRPLMVKGDYLPLVHGSGLFQRGQTQV 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + + TLG   + Q +D++  T+   ++ HYNF P  TGE  R+G+P RREIGHG LA RA
Sbjct: 355 LSIATLGMLSEWQRLDTIEPTEGKRYIHHYNFPPYCTGETGRLGSPKRREIGHGNLAERA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PV+P   +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI +PV+G+AMGL++
Sbjct: 415 LLPVIPSEEEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPIKRPVSGVAMGLIQ 474

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +    ++L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL+QA  GR
Sbjct: 475 EEGKTVVLTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALKQAHEGR 534

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HIL+ M   + ++R    E  P++  M IP D IR+VIG GGKVIR I ++TGA V I 
Sbjct: 535 MHILDAMLAAVPQTRTATKETAPQIISMKIPVDNIRDVIGSGGKVIRAIQDETGATVEIQ 594

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +DG+V I+    A  + A++ I +I  VPEV + Y G+VV +  FGAFV     +DGL+H
Sbjct: 595 EDGSVFISGVGDAG-KLAQDRILAIIKVPEVGEEYTGRVVGIQPFGAFVELLPGKDGLLH 653

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI---KLSMKVVDQNTGK 696
           IS+++  RV K  DV+  GD V V++LD DD+GKI   +L    V QN G+
Sbjct: 654 ISRVAQGRVNKIEDVLSVGDEVRVRVLDVDDKGKISLDRLDKPEVAQNDGQ 704


>gi|255534604|ref|YP_003094975.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340800|gb|ACU06913.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 780

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 298/695 (42%), Positives = 450/695 (64%), Gaps = 28/695 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q++G+V+   G T++LATVV ++    G DF PLTV+Y+E+ Y+ GK
Sbjct: 16  GREITIETGKLAKQANGSVVVRMGGTMLLATVVANKDASPGVDFLPLTVDYREKFYSGGK 75

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE+RP++ EIL  R++DR +RPLF   +  E QV+I+++ +D E  P  ++ +
Sbjct: 76  IPGNFFRREARPSDEEILTMRLVDRVLRPLFPDDFHAEVQVMISLISYDKECMPEALAGL 135

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ ++ +PF GP+    V  I+GQ V+NP R + D+  L++ V  T+D+++MVE  
Sbjct: 136 AASAAIAITDIPFNGPMSEVTVARIDGQLVVNPSRENLDKADLNILVGATKDSIVMVEGV 195

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIK 249
            ++++E+ +++AI F H E K  +EA  +LA+   K    +  ++++    +EE+ + + 
Sbjct: 196 MDEITEEEMIEAIKFAHEEIKVQVEAQERLAERVGKS---LPKREYTHENHDEEIREKVW 252

Query: 250 EDLRVSCFIPEKYVRCKQ--IDDLKKKMVSYFSSEHSSWNEGEIVSV-------FEDIQA 300
           +D     +   K    K+   D+ K  +  +     + ++E E+ +V       F D++ 
Sbjct: 253 KDTFDKVYEVAKTPSAKEERHDNFKAVLEEFL----AQYSEEELETVKPFAKIYFHDVEK 308

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R ++L++K+R+DGR  ET+R I ++V  L   HGS++F RG+TQ++  VTLG+ +D 
Sbjct: 309 EAMRQMILNEKIRLDGRTPETIRPIWSEVDYLPGAHGSAVFTRGETQSLTAVTLGSVKDA 368

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
             VDS++      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A+ P
Sbjct: 369 NMVDSVAINYDEKFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALSRIIP--AENP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSD 478
           YT+RIVS+I ES+GSSSMATVC  +LALMDAGV I+KPV+GIAMGLV D +   F +LSD
Sbjct: 427 YTIRIVSDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLVTDPESGKFTVLSD 486

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKV GT  GITA QMD+KI G+S +IM  AL+QA+ GRLHIL EM K 
Sbjct: 487 ILGDEDHLGDMDFKVTGTADGITACQMDIKIQGLSMDIMETALKQAREGRLHILGEMLKT 546

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKI 595
           L   R+ +    P++E++ IP + I  VIG GGK+I+ + +     + I++ G    ++I
Sbjct: 547 LDAPRVDVKPHAPKMEVLEIPKEFIGGVIGPGGKIIQQMQKDFQTVIAIEEIGEIGRIEI 606

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +  S   I A    I  IT VP V ++Y G+VVKVMDFGAFV      +GL+HIS++   
Sbjct: 607 SGVSRENINATIAAINEITFVPTVGEVYNGRVVKVMDFGAFVAIAKGTEGLLHISEIEWA 666

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R+ K      EGD V VK + +DDR K+KLS KV+
Sbjct: 667 RLDKVP--YNEGDMVEVKFMGYDDRKKMKLSRKVL 699


>gi|257784591|ref|YP_003179808.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
           20469]
 gi|257473098|gb|ACV51217.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
           20469]
          Length = 732

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/698 (41%), Positives = 431/698 (61%), Gaps = 30/698 (4%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T E +  G+   LE G +A+Q+ GA +   G++ VL T V  +  KD  DFFPLTV++ E
Sbjct: 5   THEFDLYGKHYTLEAGELAKQATGACIVKCGDSTVLLTAVVSKERKD-YDFFPLTVDFIE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG++PGGYL+RE+RP+E   L +RMIDR +RP F + ++NE Q++   +  D  ++
Sbjct: 64  KMYAVGRVPGGYLKREARPSEKATLTARMIDRPLRPSFPEGFRNEVQIVATSLVADQVNA 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPV----VGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
              +S++ ASAAL + G+PFEGP+    +G   D   G++++NP  +E D   LDL + G
Sbjct: 124 VDTISVMGASAALAVGGVPFEGPLACVRIGRNAD--TGEFLVNPTYEERDHSDLDLELGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAK--------- 227
           +   + M+E  A+++SE+ +L A+ FG       C+   + I+K  ++            
Sbjct: 182 SSTFISMLEAGADEISEEDMLSAMAFGQEAIAAFCEEQKKFIAKWEEVNGPIVKREYILD 241

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           EPI           ++MS  +K+         +K  R +++ DL  ++ + F+ E     
Sbjct: 242 EPIAEVHDRIFAYYDQMSAALKD--------ADKQSRMQKVADLMDEIKAQFTEEEQELW 293

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              I    + ++   +R ++++   R+DGR +  +R I  +   L   HGS LF RG TQ
Sbjct: 294 SRAIAVELKALEKHAMRVMVVETGERVDGRVANEIRPIMVKPDYLPLVHGSGLFQRGQTQ 353

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + + TLG   + Q +D++       ++ HYNF P  TGE  RMG+P RREIGHG LA R
Sbjct: 354 VLSICTLGMLNEWQRLDTIEPMDGKRYIHHYNFPPFCTGETGRMGSPKRREIGHGALAER 413

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PV+P   +FPYT+R+VSE+ ES+GSSSMA+ CGS+L+LMDAGVP+ +PV+G+AMGL+
Sbjct: 414 ALLPVIPSEEEFPYTIRVVSEVMESNGSSSMASTCGSTLSLMDAGVPLKRPVSGVAMGLI 473

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           ++    ++L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL QA  G
Sbjct: 474 QENGKTVVLTDIQGLEDFLGDMDFKVCGTTKGITAMQMDNKATGLTPEILRNALMQAHEG 533

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+ ILN+M + +   R +  E  P++  ++IP D+IR+VIG GGKVIRGI E TGA V+I
Sbjct: 534 RMFILNKMLEQIPAPRTETKETAPQIISLSIPIDKIRDVIGSGGKVIRGIQEDTGATVDI 593

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
            +DGTV IA ++ A  EAA E I++I  VPEV + Y G+VV +  FGAFV     +DGL+
Sbjct: 594 QEDGTVFIAGTNGA-AEAAAERIKAIVKVPEVGEEYTGRVVGLQPFGAFVELLPGKDGLL 652

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           HIS+++  RV K  DV+  GD V VK+L+ D++GKI L
Sbjct: 653 HISRVAQGRVEKIEDVLAIGDEVKVKVLEVDEKGKISL 690


>gi|163783568|ref|ZP_02178558.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881188|gb|EDP74702.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 773

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 289/694 (41%), Positives = 436/694 (62%), Gaps = 20/694 (2%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +E GR A+Q+DGAV+   G T VL T V         DF PLTV+Y+ER  A G+IP
Sbjct: 13  PIVIEVGRYAKQADGAVVVRQGGTAVLVTAVMSDEPNTEIDFTPLTVDYRERPSAYGRIP 72

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+++RE +P+E E+L SR+IDR +RPLF + + ++  V    +  D    P V+++  A
Sbjct: 73  GGFVKREGKPSEREVLASRVIDRPLRPLFPEGFFHDVVVTALTLSADDNYDPDVLAITGA 132

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEAN 193
           SAAL +S +PFEGP+ G +V  + G++V NP  +E +   L++ ++GT+DA++MVE  A 
Sbjct: 133 SAALHISRIPFEGPIAGVRVCKVGGEFVANPTYEERKDADLEIVMAGTKDAIVMVEGGAK 192

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKL-----AKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           ++ E+V+ +A+ FGH   +  I    KL      +    E I +D +    LEEE S+ I
Sbjct: 193 EVPEEVITEALFFGHEAIQEAIALQEKLRESIGVQKVEFEGINLDEELVRALEEECSERI 252

Query: 249 KEDLRVSCF-IPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
                VS F I +K  R K +  + ++ +  +   E   +N   +   F+ +++K++R  
Sbjct: 253 -----VSAFAIQDKKERNKTLSHILEEFIEKHGVPEELHFN---VKYFFKKLESKLMREK 304

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L + VR+DGR  E +R IS ++   +R HG ++F RG TQA V VTLG  ++ Q ++++
Sbjct: 305 ILAEGVRIDGRKPEEIRPISIEIHPFERPHGCAVFTRGQTQAYVTVTLGAPDEAQLIETI 364

Query: 367 S-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G     FM+HYNF P + GE    G P RREIGHG LA RA+ PV+P+   FPY +R+
Sbjct: 365 AEGEVFKRFMLHYNFPPFSGGEARSWGPPRRREIGHGALAERALEPVIPEEDDFPYIIRV 424

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPIS--KPVAGIAMGLVKDGDDFIILSDISGDE 483
           VS+I ES+GS+SMATVCG SLAL DAGVPI   K V+GIAMGL+K+GD ++ILSDI GDE
Sbjct: 425 VSDILESNGSTSMATVCGGSLALFDAGVPIKGGKHVSGIAMGLIKEGDRYVILSDILGDE 484

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  G+T++QMD+KI GI++ IM  AL+QAK GRL+IL +M + + E +
Sbjct: 485 DHLGDMDFKVAGTREGVTSIQMDIKIKGITKEIMTEALKQAKEGRLYILEKMYEAIPEPK 544

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  + PR+ I  +P ++   VIG GG  ++ I E+T  K+ + ++G V +   S   I
Sbjct: 545 KELSPYAPRIVIYKVPEEKAALVIGPGGSNVKKIYEETEVKIWVGEEGKVFLTGYSDEAI 604

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A EMI ++    EV ++Y+G+V +V  +G FV     + GL+H+S+++ + +    D 
Sbjct: 605 QKAIEMIENLVKDVEVGQVYEGKVTRVEPYGVFVEILPGKVGLLHVSKMA-QPIKHAGDK 663

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              GDTV VK+L+ DD G+ K +   +D ++  P
Sbjct: 664 YSVGDTVKVKVLEVDDMGRPKFTTMGLDGSSSPP 697



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++Y+G+V +V  +G FV     + GL+H+  +  ER     +V + GD V VK+ + 
Sbjct: 702 EVGEVYEGKVTRVEPYGVFVEILPGKVGLLHVDNMK-ERTRDAREVFEVGDKVKVKVFEL 760

Query: 678 DDRGKIKLSMKV 689
           D+RG+ KL+ K+
Sbjct: 761 DERGRPKLTDKI 772


>gi|331084721|ref|ZP_08333809.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330410815|gb|EGG90237.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 721

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 292/693 (42%), Positives = 425/693 (61%), Gaps = 19/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+V Y+E+ 
Sbjct: 32  EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 91

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  D + SP 
Sbjct: 92  YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +   S L L V+ T+D V+
Sbjct: 152 LTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVASTRDKVI 211

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  +++AI   H   + VI+ I  +   C KE     S     + EE+ +
Sbjct: 212 MIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTS---CAVPEELFE 268

Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
            IK     E++  + F  EK VR + I  +++K+   F +E+  W E  GE +  +   Q
Sbjct: 269 AIKEIVTPEEMEEAVFTDEKQVREENIRVIREKLEEAF-AENEEWLELLGEALYQY---Q 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR  + +R ++A+  L+ R HGS++F RG TQ   + TL    +
Sbjct: 325 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTITTLAPLSE 384

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+
Sbjct: 385 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAE 444

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV  +  DD+I+L
Sbjct: 445 FPYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYIVL 504

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E M
Sbjct: 505 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDEVM 564

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK ++E R  +G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V +
Sbjct: 565 SKAIAEPRASVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSV 624

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                  +E A +MI  I    E  ++ +G+VV + +FGAFV F   ++G+VHIS++S E
Sbjct: 625 CGVDAEAMEEAMKMIAIIVTDFEAGQVLEGKVVSIKEFGAFVEFAPGKEGMVHISKISKE 684

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    DV+  GD V V  L  D  G++  S+K
Sbjct: 685 RIKNVEDVLTLGDKVKVVCLGKDKMGRMSFSIK 717


>gi|153814912|ref|ZP_01967580.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
 gi|317500424|ref|ZP_07958648.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089569|ref|ZP_08338468.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847943|gb|EDK24861.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
 gi|316898179|gb|EFV20226.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404937|gb|EGG84475.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 695

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/695 (41%), Positives = 425/695 (61%), Gaps = 19/695 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       +DG DFFPL+V Y ER 
Sbjct: 6   EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTSTASEKPRDGIDFFPLSVEYNERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D + SP 
Sbjct: 66  YAVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ AS A  +S +PF+GP+   QV  I+G++V NP   + + S L L V+ T++ V+
Sbjct: 126 LTAMLGASLATSISDIPFDGPISTTQVGLIDGEFVFNPTAAQREVSDLALTVASTKEKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ ED +++AI   H   + VI     +   C K     +S     + EE+  
Sbjct: 186 MIEAGANEVPEDRMIEAIFAAHELNQKVIAFFDTIVAECGKPKHEYES---CAIPEELFD 242

Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
            IKE     ++  + F  EK +R   I  + +K+   F  ++  W    GE +  +   Q
Sbjct: 243 AIKEIVPPAEMEQAVFTDEKQIREDNIRQITEKLEEAF-IDNEEWLSLLGEAIYQY---Q 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR  + +R ++A+V LL R HGS++F RG TQ   V TL    +
Sbjct: 299 KKTVRKMILKDHKRPDGRAIDQIRPLAAEVDLLPRVHGSAMFTRGQTQICTVTTLAPLSE 358

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L  ++    +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+
Sbjct: 359 AQRLDGLDESETTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476
           FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L
Sbjct: 419 FPYAIRTVSETFESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLVTGDTDDDYLVL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +I++E M
Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAISATKKARTYIIDEIM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +SE R ++GEF P++  M I P +I +V+G  GK I  I+EQTG K++IDD+G+V I
Sbjct: 539 NKAISEPRAEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDIDDEGSVSI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +    +E A ++I +I    E  ++++G+V+ + +FGAF+ F   ++GLVHIS+++ E
Sbjct: 599 CGTEKTAMEKAAKIIHTIVTDFEAGQVFEGKVISIKEFGAFLEFAPGKEGLVHISKIAKE 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV K  DV+  GD V    L  D  G+   S++ V
Sbjct: 659 RVNKVEDVLSLGDVVKAVCLGKDKMGRFSFSIRDV 693


>gi|182414231|ref|YP_001819297.1| polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
 gi|257096699|sp|B1ZS98|PNP_OPITP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|177841445|gb|ACB75697.1| Polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
          Length = 730

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/700 (41%), Positives = 426/700 (60%), Gaps = 29/700 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +   TG IA+ ++GAV    GET V  T    ++ K GQD+FPLTV+Y+E+  A G+ PG
Sbjct: 14  ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYREKYAAAGRFPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           GY +RE RP+E EIL SR+ DR  RPLF + + NE Q+I  +   DL +   +  +  AS
Sbjct: 74  GYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVNESDISMVNGAS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
           AAL +S +P+ GP+   +V  I G++V NP +D+    SLDL   G +  +LM+E  A+Q
Sbjct: 134 AALAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIYVGNEKDMLMIEGSADQ 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKE 250
           + E+  ++A+ FGH   +P+++AI +L   C K     P+V  + +   + E +  +  E
Sbjct: 194 IPEERFIEALAFGHESIQPILKAIKELVAQCGKPKGTFPLVGATPEARTIIERV--VPTE 251

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKVVRTVML 308
            L  + F  EK VR   +  LK++  +  ++E     + + ++  VFED+Q K  R  +L
Sbjct: 252 RLIEAIFGKEKAVRANAVKLLKEEAKAALTAELGEGKFTDVDLNVVFEDLQYKAYRKTVL 311

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS- 367
           ++ VR DGR  + +R + AQVG+L R HGS++F RGDTQ I + TLG  +D Q +D+L+ 
Sbjct: 312 ERGVRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTG 371

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G +   F++HYNF P + GE  R   P RREIGHG LA R++ PVLP    FPY++R+VS
Sbjct: 372 GVKSKSFLLHYNFPPFSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYSIRVVS 431

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----KDG--DDFIILSDISG 481
           EI  S+GS+SMA++CG  L+LMDAGVPI  PVAGI+ GL+     DG  + ++ ++DI G
Sbjct: 432 EIMASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGLMTQNASDGSIEKWVTITDILG 491

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +EDH G MDFK+AGT  GIT  Q+D+KI G+   I   A+ QA+  R+ IL  M   L  
Sbjct: 492 EEDHFGDMDFKLAGTSKGITGFQLDLKINGLPFEIAKTAIMQARDARMEILKVMLGSLPA 551

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--DDDGTVKIASSS 599
            R  L ++ PR++ + I P++I  +IG GGK IR I E TGA+++I  DD G V + S++
Sbjct: 552 PRADLSKYAPRIQTIQIDPEKIGLLIGPGGKTIRRITETTGAQIDIAEDDSGKVFVYSNN 611

Query: 600 LAEIEAAREMIRSITDVP----------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              +  A + I S+              EV KIY G+V  V +FG FV      +GL H+
Sbjct: 612 AEAMNRAIQEIDSLCGGGGPGGSKGPAIEVGKIYTGRVTGVKEFGCFVECTPGNEGLCHV 671

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
           S+L+  RV +T DVVK GD++ VK +  D+R GK++LS K
Sbjct: 672 SELADFRVRRTEDVVKMGDSITVKCIGIDERSGKVRLSRK 711


>gi|325661686|ref|ZP_08150309.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471939|gb|EGC75154.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 721

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 292/693 (42%), Positives = 425/693 (61%), Gaps = 19/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+V Y+E+ 
Sbjct: 32  EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 91

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  D + SP 
Sbjct: 92  YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +   S L L V+ T+D V+
Sbjct: 152 LTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVASTRDKVI 211

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  +++AI   H   + VI+ I  +   C KE     S     + EE+ +
Sbjct: 212 MIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTS---CAVPEELFE 268

Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
            IK     E++  + F  EK VR + I  +++K+   F +E+  W E  GE +  +   Q
Sbjct: 269 AIKEIVTPEEMEEAVFTDEKQVREENIRVIREKLEEAF-AENEEWLELLGEALYQY---Q 324

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR  + +R ++A+  L+ R HGS++F RG TQ   + TL    +
Sbjct: 325 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTITTLAPLSE 384

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+
Sbjct: 385 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAE 444

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV  +  DD+I+L
Sbjct: 445 FPYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYIVL 504

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E M
Sbjct: 505 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDEVM 564

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK ++E R  +G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V +
Sbjct: 565 SKAIAEPRASVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSV 624

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                  +E A +MI  I    E  ++ +G+VV + +FGAFV F   ++G+VHIS++S E
Sbjct: 625 CGVDAEAMEEAMKMIAIIVTDFEAGQVLEGKVVSIKEFGAFVEFAPGKEGMVHISKISKE 684

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    DV+  GD V V  L  D  G++  S+K
Sbjct: 685 RIKNVEDVLTLGDKVKVVCLGKDKMGRMSFSIK 717


>gi|229815242|ref|ZP_04445578.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
           13280]
 gi|229809252|gb|EEP45018.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
           13280]
          Length = 714

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 287/683 (42%), Positives = 426/683 (62%), Gaps = 14/683 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+    E G +A+Q+ GA L   G++ VL TVV  +  K+  DFFPLTV++ E+ YA G+
Sbjct: 12  GKTYVFEVGELAKQATGAALVKQGDSTVLTTVVVSKERKN-YDFFPLTVDFNEKMYAAGR 70

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGGYL+RE RP+E   L +RMIDR IRP F   ++NE QV+   +  D ++   V+ ++
Sbjct: 71  IPGGYLKREGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130

Query: 133 AASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVE 189
            AS A+ + G+PFEGP+   ++  D   G++++NP  +E + S LDL ++GT+D + MVE
Sbjct: 131 GASLAMTIGGVPFEGPLACVRIGRDKETGEFIVNPTYEERENSDLDLELAGTRDFISMVE 190

Query: 190 LEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
             A ++SE+ +L A+ FG       C   +E + +  ++    PIV       +  EE+ 
Sbjct: 191 AGAEEVSEEDMLAAMQFGQEAIGAFCDAQLEFVEEWERVNG--PIVKREYPLDQPVEEVH 248

Query: 246 QMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
             I    +++  +    +K  R  ++ +LK+ + + F+ E     E EI    + ++   
Sbjct: 249 DRIFAHYDEMAAALRDADKLSRQDKVAELKEAIKAEFTEEEQLVWEREIPVNLKKLEKTA 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++++   R+DGR +  +R I  +   L   HGS LF RG TQ + V++LG   + Q 
Sbjct: 309 MRRMVVETGERVDGRTAAEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQR 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D++       +M HYNF P  TGE  RMG P RREIGHG LA RA+ PVLP   +FPY 
Sbjct: 369 LDTIEPVDGKRYMHHYNFPPYCTGETGRMGTPKRREIGHGNLAERALIPVLPDENEFPYA 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSSMA+ CGS LALMD GVPI +PV+GIAMGL+++    ++LSDI G 
Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSDIQGL 488

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKV GT+ GITA+QMD K  G++ +I+  AL+QAK GR +IL++M +V+   
Sbjct: 489 EDFLGDMDFKVTGTEKGITALQMDNKATGLTFDILRTALEQAKEGRAYILDKMLEVVPGP 548

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +     P+++ + IP + IR+VIG GG+ IRGI ++TGA ++I +DGTV +     + 
Sbjct: 549 REETRTTAPKIQCITIPTENIRDVIGKGGETIRGIQDETGASIDIHEDGTVYVGGVGES- 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + AA E I  I  VPEV + Y G+VV +  FGAFV+    +DGL+HIS+++  RV K  D
Sbjct: 608 VAAAIERIELIVKVPEVGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAQGRVEKVED 667

Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685
           V+  GD V VK+++ DDRGKI L
Sbjct: 668 VLNVGDEVKVKVIEIDDRGKISL 690


>gi|317057303|ref|YP_004105770.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
 gi|315449572|gb|ADU23136.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
          Length = 705

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/699 (40%), Positives = 440/699 (62%), Gaps = 19/699 (2%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +  T E  +AGRP+ +ETG+    ++G+    YGETVV+A V   +  ++G DFFPL
Sbjct: 1   MFENARTFETTYAGRPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVG+IPG + +RE + ++  IL SR +DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDFEEKMYAVGRIPGSFTKREGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D ++SP +  M+AA+ A+ +S +P+ GPV    V Y++G+ VLNP L++  +  L+L V
Sbjct: 121 VDPDNSPEITGMIAAAIAISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNELNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +G+ D ++M+E  AN++ +D++L AI  GH E K ++E I  + K   K     +S +  
Sbjct: 181 AGSADKIVMIEAGANEIPDDLMLKAIETGHTEIKKMVEFIKGIQKEIGKPKFEFESMEVD 240

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEI 291
             L +E+  M+ ED++ +    +K +R         +M   + + H  ++E        +
Sbjct: 241 HDLFDEIEAMVGEDVKKALDTDDKNIR-------DARMQPIYDAVHEKYDEQYPDQGAML 293

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V   +Q K+VR  + + K R+DGR  + +R ++A+VG+L R HGS +F RG TQ + +
Sbjct: 294 EEVLYKLQKKIVRNWLYEGK-RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTI 352

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG   D Q +D L       +M  YNF   + GE      P RREIGHG LA RA+ P
Sbjct: 353 CTLGPVSDAQKLDGLDEETSKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALVP 412

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDG 470
           VLP   +FPY +R VSE+  S+GS+S  ++CGS+LALMDAGVPI +PVAGI+ GL+ K+ 
Sbjct: 413 VLPSVDEFPYAIRCVSEVLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKED 472

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             ++ + DI G ED  G MDFKV GT +GITA+Q+D+K+ G++ +I+  A ++ ++ R++
Sbjct: 473 GSWMTMVDIQGLEDFYGDMDFKVGGTKNGITAIQVDIKVDGLTMDIIASAFEKTRKARMY 532

Query: 531 ILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           IL+E M K + E R ++ ++ P++    +P D+IR VIG GGKVI+ I  +   K++I +
Sbjct: 533 ILDEIMLKAIPEVRPEVSKWAPKMLSTKVPVDKIREVIGSGGKVIQKISAECDVKIDISE 592

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG+V ++     + + A  +I +I + PE+  IYKG+VV++M+FGAFV     +DGLVHI
Sbjct: 593 DGSVFVSGLDKEKAQQAINIINTIANDPEIGAIYKGKVVRIMNFGAFVEIAPGKDGLVHI 652

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           S+L  +RV K  DVV  GD + VK+++ DD+G+I LS K
Sbjct: 653 SKLDNQRVEKVEDVVSIGDEIVVKVMEIDDQGRINLSRK 691


>gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 745

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 271/685 (39%), Positives = 431/685 (62%), Gaps = 7/685 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E AGR L +ETG++A+ ++G+ L  YG TVVL+T    +  + G DFFPL+V+Y+E+ YA
Sbjct: 8   ELAGRDLIVETGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYEEKMYA 67

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           +GKIP G+++RE RP+E  IL SR+IDR +RPLF K  +N+  V   V+  D  +SP + 
Sbjct: 68  IGKIPRGFIKREGRPSEKAILTSRVIDRPMRPLFPKDLRNDVAVNNLVLAVDQNASPEIA 127

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S A+ +S +P+ GP+ G Q+  I+GQ ++NP  ++  Q  + + ++GT++ + M+
Sbjct: 128 AMIGSSIAVAISDIPWRGPISGVQLGLIDGQVIINPNEEQRKQSQMAVTLAGTEEKICMI 187

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQM 247
           E  A+++ EDV+++A++ GH E +     I  +     K     +S     ++  E+ Q 
Sbjct: 188 EAGADEVPEDVMMNALLAGHQEIQKTCRFIKSIVAEIGKPKFTYESAAVPEEIMTEVKQF 247

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
             E ++ +    +K  R + ID L  ++  + ++ +  W      +V++ ++ K VR  +
Sbjct: 248 AAEKMKQAVLAVDKNERDQNIDALTAEINEHLTAINEEWAAWTNDAVYQ-LEKKTVRNYL 306

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
             +  R+DGR  + +R +S   G+L   HGS LF RG TQ + + TLG     Q +D L 
Sbjct: 307 FHEHRRVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQTLDGLD 366

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
             +   +M HYN    +TGE     +P RREIGHG LA R++ PVLP   +FPY +R VS
Sbjct: 367 NEKEKRYMHHYNMPGYSTGEAKPNRSPGRREIGHGALAERSLVPVLPSEEEFPYAIRTVS 426

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---KDGDDFIILSDISGDED 484
           EI  S+GS+S  +VC S+LALMDAGVPI +PVAGI+ GL+   ++ +DF++  DI G ED
Sbjct: 427 EIMMSNGSTSQGSVCASTLALMDAGVPIKRPVAGISCGLLVNEENDEDFLVFMDIQGIED 486

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSESR 543
             G MDFKVAGT  GIT++Q+D+K+ G+S +++  AL   ++GRL I+N+ +   L   R
Sbjct: 487 FFGDMDFKVAGTTEGITSIQVDIKVDGLSYDVIRQALAITRKGRLQIINDIILPRLPGPR 546

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L ++ P++  ++IP D+IR VIG GGKVI  I+  TG  ++I++DG V I++  L + 
Sbjct: 547 AELSQYAPKILQLSIPVDKIREVIGQGGKVINKIIADTGVAIDIEEDGRVFISAVDLEQG 606

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A ++I  I + PE  +++ G+V ++M+FGAFV F   ++GLVHIS+++ + V K  D 
Sbjct: 607 NKALKIINGIVNDPEPGQVFTGKVTRLMNFGAFVEFLPGKEGLVHISKMAWQHVEKVEDC 666

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           VKEGD V VK+++ D +G+I LSM+
Sbjct: 667 VKEGDIVTVKVIEIDAQGRINLSMR 691


>gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           RA-YM]
 gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Riemerella anatipestifer RA-GD]
          Length = 711

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 298/699 (42%), Positives = 445/699 (63%), Gaps = 35/699 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+   G T++LATVV  +    G DF PLTV+Y+E+  A G+
Sbjct: 16  GREITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFLPLTVDYREKFGAAGR 75

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE++P+++E+L  R++DR IRPLF   +  E QV+I+++ +D +  P  ++ +
Sbjct: 76  IPGNFFRREAKPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMISLISYDEKVMPDSLAGL 135

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFVSGTQDAVLMVEL 190
           AASAA+ ++ +PF GP    +V   +G   +NP  +  Q    LD+ V  T+D+++MVE 
Sbjct: 136 AASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSWETLQSGVELDIMVGATKDSIVMVEG 195

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEMSQM 247
           E ++++E  +L+AI F H E K  +EA  +LA+   K         F K E   E   + 
Sbjct: 196 EMDEITEQEMLEAITFAHQEIKTQVEAQERLAQKVGKA--------FPKREYCHETHDEE 247

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----------SEHSSWNEGEIVSV-FE 296
           +K+ +    +  +KY    +    K++    FS          +E     + ++  V F 
Sbjct: 248 LKKQIWDYAY--QKYYDIAKNPSAKEERGEKFSAVVEEFLAQYTEEELEEKADLAKVYFH 305

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+Q + VR ++L++ +R+DGR+++ +R I ++V  L   HGSS+F RG+TQ++  VTLG+
Sbjct: 306 DVQKEAVRQLILNENIRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGS 365

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D   +DS+       F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P+ 
Sbjct: 366 LMDANRIDSVITQHDERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKVMIPE- 424

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FI 474
            + PYT+RIVS+I ES+GSSSMATVC  +LALMDAG+P+ KPV+GIAMGL+ D +   + 
Sbjct: 425 -ETPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIPMRKPVSGIAMGLITDKESGKWT 483

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT++GITA QMD+KI G++ +IM  AL QAK GRLHIL E
Sbjct: 484 VLSDILGDEDHLGDMDFKVTGTENGITACQMDIKIQGLTMDIMEQALMQAKNGRLHILGE 543

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-- 592
           M K +SE R  +    P++ +M IP D I  VIG GGKVI+ + ++TG  + I++ G   
Sbjct: 544 MLKTISEPRADVKPHAPKMVMMEIPKDFIGAVIGPGGKVIQQMQKETGTVITIEEKGEIG 603

Query: 593 -VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            ++I+ +   +I AA   I  IT +P V ++Y+G+VVKVMDFGAFV      +GL+HIS+
Sbjct: 604 YIEISGTDREKINAAIAQINEITFIPIVGEVYQGKVVKVMDFGAFVQLAKGTEGLLHISE 663

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  +R  K     KEGD V VK + +DDR K+KLS KV+
Sbjct: 664 IDWKRTDKVP--YKEGDIVEVKFMGYDDRKKMKLSRKVL 700


>gi|328955438|ref|YP_004372771.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
           PW2]
 gi|328455762|gb|AEB06956.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
           PW2]
          Length = 761

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/689 (41%), Positives = 430/689 (62%), Gaps = 12/689 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   E  G+   LE+G +A+Q+ GA L   G+T  L TVV  +  K+  DFFPLTV++ E
Sbjct: 5   TRTFELYGKTYTLESGELAKQATGAALVKQGDTTALTTVVVSKERKN-YDFFPLTVDFNE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGG+L+RE R ++   L +RMIDR IRP F   ++NE Q+++  +  D  + 
Sbjct: 64  KLYAVGRIPGGFLKREGRASDKGTLTARMIDRPIRPSFPDGFRNEVQIVVTTLVADQTNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQGS-LDLFVSGTQ 182
             V+S + AS +L L G+PFEGP+   ++     +G++++NP  +E + S LDL ++GT+
Sbjct: 124 IDVISTMGASLSLTLGGVPFEGPLACVRIGRSGDSGEFIVNPTYEEIEASDLDLVLAGTR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           D + MVE  A+++SE  +L A+ FG        +          +E   I  +++  L+E
Sbjct: 184 DFISMVEAGADEISEQDMLAAMEFGQRAIGAFCDEQLAFVDQWERENGPIQRREYP-LDE 242

Query: 243 EMSQMIK------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            + ++        +++  +    +K  R +++ DLK ++ + F+ E     E EI    +
Sbjct: 243 PVPEVHDRIFTHYDEMAAALADADKLSRVEKVADLKARITAEFTEEERIAWEREIPVNLK 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ + +RT++++   R+DGR ++ +R I  +   L   HGS LF RG TQ + V+ LG 
Sbjct: 303 KLEKQAMRTMVVETGERVDGRRADEIRPIMVKDAYLPLVHGSGLFQRGQTQVLSVLALGM 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D++   +   +M  YNF P +TGE  RMGAP RREIGHG LA RA+ PVLP  
Sbjct: 363 LNESQRLDTIEPVEGKRYMHQYNFPPFSTGETGRMGAPKRREIGHGHLAERALLPVLPDE 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++FPY +R+VSE+ ES+GSSSMA+ C S LALMD GVPI +PV+GIAMGL+++    ++L
Sbjct: 423 SEFPYAIRVVSEVLESNGSSSMASTCASCLALMDGGVPIKRPVSGIAMGLIQENGKTVVL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED LG MDFKV GT+ GITA+QMD K  G++ +I+  AL+QA+ GR  I  +M 
Sbjct: 483 SDIQGIEDFLGDMDFKVTGTERGITALQMDNKATGLTFDILRQALEQARAGRAFIRGKMV 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            VL E R Q     PR+  +++P D+IR VIG GGKVIRGI ++TGA ++I +DGTV + 
Sbjct: 543 DVLPEPRSQTRSTAPRIVSVSVPVDKIREVIGSGGKVIRGIQDETGASIDIQEDGTVYVG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +  + +E A E I+ I  VPE  + + G+VV V  FGAFV     +DGL+HIS+++  R
Sbjct: 603 GTGTS-VEDAVERIKLIVHVPEPGEEFTGRVVSVQPFGAFVSLLPGKDGLLHISRVAQGR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V K  DV+  GD V V++L+ DDRGKI L
Sbjct: 662 VDKVEDVLNIGDEVRVRVLEVDDRGKISL 690


>gi|283798318|ref|ZP_06347471.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
 gi|291073901|gb|EFE11265.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
          Length = 703

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/695 (41%), Positives = 432/695 (62%), Gaps = 19/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A Q++GA    YG+T VL+T       ++G DFFPL+V ++E+ Y
Sbjct: 7   MELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + SP  
Sbjct: 67  AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP    Q+  I+G++++NP   + + S + L V+ T++ V+M
Sbjct: 127 TAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           +E  AN++ EDV++ AI   H   + +I+ I  +   C K     E   +  + F+ + E
Sbjct: 187 IEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFAAIRE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
            + Q   E++  + F  EK  R + I  + +++   F +E+  W    GE +  +E    
Sbjct: 247 IVPQ---EEMEEAVFTDEKQKREENIRVITERLEEAF-AENEEWLSVLGEAIYQYE---K 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GIT++QMD+KI G++  I+  A+ + +  RL+IL+E M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R ++G++ P++E + I P +I +V+G  GKVI  I+EQTG K++I+DDG V + 
Sbjct: 540 PVIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +  A I+ A  +IRSI    E  ++  G VV++M+FGAFV     +DG++HIS+LS +R
Sbjct: 600 GTDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           VAK  DVV  GD V VK+++ D  G+I LSMK  D
Sbjct: 660 VAKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGD 694


>gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 721

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 293/709 (41%), Positives = 435/709 (61%), Gaps = 32/709 (4%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L TG  A Q+ GAV+   G+T +L T     + K   DF PL  +Y+E+ Y
Sbjct: 8   ITFDGREIRLTTGLYAPQAGGAVMIECGDTSLLVTAT-KTTKKQAADFLPLICDYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG++RRE RP E   LI+R+IDR +RPLF    ++E Q++ + +  D      V
Sbjct: 67  AAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           + +  AS A +L+ +PF GP+   +V  I   ++LNP   E ++G LD+ V+G+ + ++M
Sbjct: 127 LGVTGASIATLLAEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPEGIVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMS 245
           +E  ANQLSE   ++AI FG+       EA+S+L K  A+E ++ D   K    LE E  
Sbjct: 187 IEAGANQLSEQDTIEAIDFGY-------EAVSELIK--AQENLLKDLGIKQVKPLEPEED 237

Query: 246 QMIKEDLRVSCFIP-----EKYVRCKQIDDLK--------KKMVSYFSSEH-----SSWN 287
           + +   L  +C  P     +K+ + K+  DL+        +  +     ++     +S N
Sbjct: 238 KALATYLEKNCTKPIDLILKKFDQSKEERDLELDKIELEVQTKIDSLKDDNQLKVLTSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346
           E  I S F+ +  K++R+ ++++  R+DGRD + VR ISA  G+L +R HGS+LF RG T
Sbjct: 298 EKLIHSDFKKLTKKLMRSQIINEGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL
Sbjct: 418 RAITPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+  +++  A+++A+ 
Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPVSVISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARLHILEKMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFPGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVAQNGG 706


>gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9215]
 gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 721

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 292/702 (41%), Positives = 428/702 (60%), Gaps = 18/702 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L TG  A Q+ G+V+   G+T +L T     + K+  DF PL  +Y+E+ Y
Sbjct: 8   ITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTAT-KTTKKEASDFLPLICDYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG++RRE RP E   LISR+IDR +RPLF    ++E Q++ + +  D      V
Sbjct: 67  AAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLDERVPADV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G+ D ++M
Sbjct: 127 LAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-----LEE 242
           +E  ANQLSE   ++AI FG+     +I++   L K    + I     +  K     LE+
Sbjct: 187 IEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLKDLGIKQIKPSDPEEDKTLPSYLEK 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVSV 294
             S+ I  DL +  F   K  R  +++ +K +  S   S          +S NE  I S 
Sbjct: 247 NCSKAI--DLVLKKFDQSKEERDLELEKIKTETQSKIDSLKDDNEVRVLTSENEKLIHSD 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R+ +++   R+DGR+ + VR I+A  G+L +R HGS+LF RG TQ +   T
Sbjct: 305 FKKLTKKLMRSQIINDGKRVDGRELDEVRKITASAGILPKRVHGSALFQRGLTQVLSTTT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA RAI PVL
Sbjct: 365 LGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV G AMGL+K+G D 
Sbjct: 425 PGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVGGTAMGLIKEGKDV 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+  +I+  A+++A+  RLHIL 
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTNKGITALQMDMKITGLPVSIISDAIKKARPARLHILE 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G V
Sbjct: 545 KMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+VHISQLS
Sbjct: 605 TIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQLS 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 665 EARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706


>gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
 gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
          Length = 758

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 292/695 (42%), Positives = 438/695 (63%), Gaps = 26/695 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + LETG++A+Q+DGAV+   G T++LATVV  +      DF PL+V+Y+E+  +VG+
Sbjct: 13  GRVITLETGKLAKQADGAVMLKMGNTMLLATVVSAQDAGPDVDFMPLSVDYKEKFASVGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE + ++ EIL+SR++DR++RPLF   Y  ET V + +   D ES P  ++ +
Sbjct: 73  FPGGFTRREGKSSDYEILVSRLVDRALRPLFPDDYHAETFVQVTLYSADEESMPDALAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I G++V+NP      +  LD+ V  T + ++MVE E
Sbjct: 133 AASAALAVSDIPFHGPISEVRVARIQGEFVINPTASALKEADLDIMVGATYENIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++SE  +LDAI F H   K    A  +LA    KE         +   E   + +++D
Sbjct: 193 MNEVSEKEMLDAIKFAHAAIKEQCVAQQELAAAVGKE-------KRTYCHEVNDEELRKD 245

Query: 252 LRVSCFI----------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +   C+             K++R + +D+++ + ++    E        +   + D++ +
Sbjct: 246 IWDKCYQKAYDVARQCNANKHLRGELLDNVRAEYLASLPEEEQIEKAMLVGRYYHDVEKE 305

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++LD+ VR+DGR +E +R I  +VG L   HGSS+F RG+TQ++  VTLGT+ DE+
Sbjct: 306 AMRRMILDEGVRLDGRTTEQIRPIWCEVGYLPGPHGSSIFTRGETQSLSSVTLGTKLDEK 365

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D  +   +  F++HYNF P +TGE        RREIGHG LA RA+  ++P+   FPY
Sbjct: 366 IIDEATIQGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLALRALKRMIPE--DFPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV GIAMGL+ D     + +LSDI
Sbjct: 424 TVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVTGIAMGLITDKGCAKYAVLSDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+K+ G+S  IM  AL+QAKRGR+HI++ +++ +
Sbjct: 484 LGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEIMEQALEQAKRGRMHIMDIITETM 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIA 596
              R  L    PR+  + I  DQI  +IG GGK+I+ I E++GA +NI+   + G V ++
Sbjct: 544 PAPREDLKPHAPRIVTVTIDKDQIGALIGPGGKIIQDIQEKSGATINIEEVGNKGIVDVS 603

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +++   I+ A   IR+I   PEV ++Y G V  +M FGAF+     +DGL+H+S++  +R
Sbjct: 604 ATNKESIDKALARIRAIVAKPEVGEVYDGIVKSIMPFGAFIEILPGKDGLLHVSEIDYKR 663

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           + K  DV+KEGD + VKLL+ D + GK++LS K +
Sbjct: 664 IEKVEDVLKEGDHIQVKLLEVDPKTGKLRLSHKAL 698


>gi|291546827|emb|CBL19935.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. SR1/5]
          Length = 697

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 433/693 (62%), Gaps = 13/693 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VLAT    +  ++G DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLATATASKEPREGIDFFPLSVEYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E +P +
Sbjct: 67  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVDMVMSVDPECNPEI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S A  +S +PF+GP    QV  I+G++++NP L +   S L L V+ T++ V+M
Sbjct: 127 PAMLGSSIATCISDIPFDGPCATTQVGMIDGEFIINPTLAQKAVSDLQLTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           +E  AN++ ED +++AI   H   + +I+ I ++   C KE    +S    + L +E+ +
Sbjct: 187 IEAGANEIPEDKMIEAIYKAHEVNQEIIKFIDQIVAECGKEKHSYESCAVPQELFDEIKK 246

Query: 247 MI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKVV 303
           ++  E++ V+ F  +K  R   I ++  K+   F +++  W    GE V  +   Q K V
Sbjct: 247 IVPPEEMEVAVFSDDKQTRENNISEITDKLKEAF-ADNEEWLAVLGEAVYQY---QKKTV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L    R DGR+   +R ++A+  ++ R HGS++F RG TQ   V TL    + Q +
Sbjct: 303 RKMILKDHKRPDGREIRQIRPLAAETDIIPRVHGSAMFTRGQTQICTVTTLAPLTEAQRL 362

Query: 364 DSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FPY 
Sbjct: 363 DGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYA 422

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDIS 480
           +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV  +  DD+I+L+DI 
Sbjct: 423 IRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGETDDDYIVLTDIQ 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVL 539
           G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M K +
Sbjct: 483 GLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVMEKCI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R  +GEF P++  + I P +I +V+G  GK I  I+E+TG K++I DDG V I  + 
Sbjct: 543 DKPRTTVGEFAPKIIQIQIDPQKIGDVVGQRGKTINTIIERTGVKIDITDDGAVSICGTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++ A+ MI  IT   E  +I+ G+VV + +FGAF+ F   ++G+VHIS++S +R+ +
Sbjct: 603 QKGMDEAKRMIEIITTEFEAGQIFTGRVVSIKEFGAFLEFAPGKEGMVHISKISKQRINR 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             DV+  GD V V  L  D  G+I  SMK V +
Sbjct: 663 VEDVLTLGDKVKVICLGKDKMGRISFSMKDVPE 695


>gi|295092781|emb|CBK78888.1| polyribonucleotide nucleotidyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 703

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/695 (41%), Positives = 432/695 (62%), Gaps = 19/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A Q++GA    YG+T VL+T       ++G DFFPL+V ++E+ Y
Sbjct: 7   MELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + SP  
Sbjct: 67  AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP    Q+  I+G++++NP   + + S + L V+ T++ V+M
Sbjct: 127 TAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           +E  AN++ EDV++ AI   H   + +I+ I  +   C K     E   +  + F+ + E
Sbjct: 187 IEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFAAIRE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
            + Q   E++  + F  EK  R + I  + +++   F +E+  W    GE +  +E    
Sbjct: 247 IVPQ---EEMEEAVFTDEKQKREENIRVITERLEEAF-AENEEWLSVLGEAIYQYE---K 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GIT++QMD+KI G++  I+  A+ + +  RL+IL+E M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTYKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R ++G++ P++E + I P +I +V+G  GKVI  I+EQTG K++I+DDG V + 
Sbjct: 540 PVIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +  A I+ A  +IRSI    E  ++  G VV++M+FGAFV     +DG++HIS+LS +R
Sbjct: 600 GTDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           VAK  DVV  GD V VK+++ D  G+I LSMK  D
Sbjct: 660 VAKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGD 694


>gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           LPCoLN]
          Length = 694

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 312/688 (45%), Positives = 437/688 (63%), Gaps = 22/688 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ L  ETG+IARQ++GAVL   GET V A+      L D  DF PL V+YQE+  + GK
Sbjct: 13  GKILVFETGKIARQANGAVLVRSGETCVFASACA-VDLDDKVDFLPLRVDYQEKFSSTGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
             GG+++RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D +  P  +++ 
Sbjct: 72  TLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDGQVLPDPLAIC 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASAAL +S +P    V G ++  I+ Q+V+NP   E   S LDL ++GT++A+LM+E  
Sbjct: 132 AASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLAGTENAILMIEGH 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LEEEMSQMI 248
            +  +E+ VLDAI FGH      I  I K  ++  +E  +  SK+ S    L  E+   +
Sbjct: 192 CDFFTEEQVLDAIEFGHKH----IVTICKRLQLWQEE--IGKSKNLSAVYPLPTEVLTAV 245

Query: 249 KE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQA 300
           KE   D     F I +K V      ++++ ++     E     SS+N   I +  + +++
Sbjct: 246 KECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFN---IKAACKTLKS 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R ++ D+++R DGR   TVR I+ +   L RTHGS LF RG+TQ + V TLG+    
Sbjct: 303 DTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  + L+G   + F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP +A FP
Sbjct: 363 QRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RI S ITES+GSSSMA+VCG  LALMDAGVPIS P+AGIAMGL+ D    IILSDIS
Sbjct: 423 YTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILSDIS 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFK+AG+  GITA QMD+K+ GI+  IM  AL QAK+G   ILN M++ LS
Sbjct: 483 GLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALS 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             +  L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++I+D G V I++SS 
Sbjct: 543 APKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDINDLGVVSISASSA 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           + I  A+E+I  +    EV K Y+G+V  V+ FGAFV     ++GL HIS+ S +R+   
Sbjct: 603 SAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCHISEFSRQRIENI 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SDVVKEGD + VKLL  +++G++KLS K
Sbjct: 663 SDVVKEGDIIDVKLLSINEKGQLKLSHK 690


>gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
 gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
          Length = 716

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/684 (40%), Positives = 425/684 (62%), Gaps = 6/684 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  GRPL +E G++A  +  + +  YGET VL  V      +DG DFFPL+V ++E+ Y
Sbjct: 18  MDLCGRPLTIEVGKVAELASASAMVKYGETTVLVAVTVSPRPRDGIDFFPLSVEFEEKLY 77

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVG+IPG ++RRE RP+   +L SR+IDR +RPLF   ++N+  +   VM  D + SP V
Sbjct: 78  AVGRIPGSFMRREGRPSLPAVLASRLIDRPMRPLFPYDFRNDVCIQCTVMSVDYDCSPEV 137

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ASA +  S +PF GP+   +V Y +GQ VLNP  ++ + S +D+ V+ T + V+M
Sbjct: 138 AAMIGASACVSYSEIPFAGPIGCLEVGYCDGQIVLNPNQEQRKTSRMDVTVAATAEKVVM 197

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           +E  A+++ ++++   I+  H E K  I+ I+++     K  +  +   F++ L +++  
Sbjct: 198 IEAGADEIPDEIMYAGIVKAHEEIKKQIDFINQIVAEIGKPKMEYEHAQFNQELFDKIVD 257

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
              ++ + +    +K VR  + + +  K    +  E+   ++  +       Q K+V+  
Sbjct: 258 EFMDEAKAAMDTDDKNVRETRWNAMIDKWHEKYLEEYPDMDQ-YLEEFTYKFQKKIVKAW 316

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L+   R+DGR    +R ++A+VG+L R HGS LF RG TQ + V TL T    Q +D++
Sbjct: 317 LLEGH-RVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTI 375

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  +M HYNF P + GE     + +RRE GHG LA RA+ PVLP   +FPY +R+V
Sbjct: 376 WEEDEKRYMHHYNFPPYSVGEARAPRSTNRREYGHGALAERALVPVLPSVEEFPYAIRVV 435

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDISGDEDH 485
           SE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL++D +  F    DI G ED 
Sbjct: 436 SEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDNGGFTTFIDIQGVEDF 495

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSESRL 544
            G MDFKVAGT +GITA+QMD+K  G++  I+  AL+  +  R  IL+E M   +S  R 
Sbjct: 496 HGEMDFKVAGTKAGITAIQMDLKNDGLTHEIIKEALEITRDARYAILDEIMLPCISAPRA 555

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ ++ P++  M I PD+IR VIG GG VI+ I  ++GA V+I+DDGT+ IAS +    +
Sbjct: 556 EVSKYAPKMITMKIDPDKIREVIGKGGSVIQKITAESGATVDIEDDGTIHIASPNAEACD 615

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA++MI +I  VP+V ++Y G+VV+++ FGAFV     +DG+VHIS+L+  RV K  DVV
Sbjct: 616 AAKKMIETIVFVPQVGELYYGKVVRILQFGAFVELAPGKDGMVHISKLADRRVEKVEDVV 675

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMK 688
             GD +WVK+ D DD+G++ LS +
Sbjct: 676 NIGDMIWVKVTDIDDKGRVNLSYR 699


>gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
 gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
          Length = 743

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/683 (42%), Positives = 426/683 (62%), Gaps = 14/683 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+   LE G +A+Q+ GA L   G++ VL TVV  +  K+  DFFPLTV++ E+ YA G+
Sbjct: 12  GKTYVLEAGELAKQATGAALVKQGDSTVLTTVVVSKERKN-YDFFPLTVDFNEKMYAAGR 70

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGGYL+RE RP+E   L +RMIDR IRP F   ++NE QV+   +  D ++   V+ ++
Sbjct: 71  IPGGYLKREGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130

Query: 133 AASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
            AS A+ L G+PFEGP+   ++  D   G++++NP  +E D   LDL ++GT+D + MVE
Sbjct: 131 GASLAMTLGGVPFEGPLACVRIGRDKETGEFIVNPTYEERDASDLDLELAGTRDFISMVE 190

Query: 190 LEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
             A ++SE+ +L A+ FG       C   +E +++  ++     IV       +  EE+ 
Sbjct: 191 AGAEEVSEEDMLAAMQFGQEAIGAFCDAQLEFVAEWEQVNGA--IVKREYPLDEPNEEVH 248

Query: 246 QMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
             I    +++  +    +K  R  ++ +LK+ + + F+ E  +  E EI    + ++   
Sbjct: 249 DRIFAHYDEMAAALRDADKLARQDKVAELKEAIKAEFTEEEQAAWEREIPVNLKKLEKTA 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++++   R+DGR +  +R I  +   L   HGS LF RG TQ + V++LG   + Q 
Sbjct: 309 MRRMVVETGERVDGRAANEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQR 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D++   +   +M HYNF P  TGE  RMG+P RREIGHG LA RA+ PVLP   +FPY 
Sbjct: 369 LDTIEPVEGKRYMHHYNFPPYCTGETGRMGSPKRREIGHGNLAERALIPVLPDENEFPYA 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSSMA+ CGS LALMD GVPI +PV+GIAMGL+++    ++LSDI G 
Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLSDIQGL 488

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKV GT+ GITA+QMD K  G++ +I+  AL+QAK GR  IL++M +V+   
Sbjct: 489 EDFLGDMDFKVTGTERGITALQMDNKATGLTFDILRTALEQAKEGRAFILDKMLEVVPGP 548

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R       P+++ + IP + IR+VIG GG+ IRGI ++TGA ++I +DGTV +     + 
Sbjct: 549 REDTRATAPKIQSITIPTENIRDVIGKGGETIRGIQDETGASIDIHEDGTVYVGGVGDS- 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + AA E I  I  VPEV + Y G+VV +  FGAFV+    +DGL+HIS+++  RV K  D
Sbjct: 608 VAAAIERIELIVKVPEVGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAQGRVEKVED 667

Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685
           V+  GD V V +++ DDRGKI L
Sbjct: 668 VLNVGDEVKVTVIEIDDRGKISL 690


>gi|187734890|ref|YP_001877002.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|226702592|sp|B2UNA9|PNP_AKKM8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187424942|gb|ACD04221.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 714

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/695 (39%), Positives = 429/695 (61%), Gaps = 11/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+VE      P+ +ETG++AR +DGAV+   G+TVVL TVV    +K+GQ FFPL+V Y
Sbjct: 3   IHSVECNVGTNPITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G  PGGY +RE RPTE EIL  RM DR +RP+F K Y  +TQVI  ++  D E
Sbjct: 63  KEKAAAAGMFPGGYFKREGRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVITLLLSADGE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++S+  ASAA ++S LPF  PV   +V  I+GQ+V+NP   + + S LDL  +GT+
Sbjct: 123 NEPDILSINGASAACVVSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHSQLDLVFAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           D V+M+E  AN+L E+  + A+       K + E   +L  +C KE    +      +L 
Sbjct: 183 DQVIMIEGSANELPEEDFIAALRVAQENVKVICEKQEELRAVCGKEKRAYELCLAKPELL 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E   ++  + +  + + P K  R K++  L+ ++ +     H    + ++  VFE IQ K
Sbjct: 243 EIGYEIAGDRIEEAIYAPSKVERQKKVGALRDEVEAAIKERHPEATDFDVEQVFEYIQKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDE 360
             R  +++K  R DGR  + +R ++A+V +L    HGS++F RG+T ++ + TL   E+ 
Sbjct: 303 AFRISIMEKDKRADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPMEER 362

Query: 361 QYVDSLSGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           QY+D+ +G+     F++HYNF P + G+  R G  +RREIGHG LA R+I PV+P   +F
Sbjct: 363 QYMDNYTGSVNEKRFILHYNFPPFSVGDTGRFGGQNRREIGHGALAERSIAPVVPGEQEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------F 473
           PY +R+ SEI ES+GS+SMA+VC  +++L+ AGVP+ +PVAGI++GLV + +D      +
Sbjct: 423 PYAIRVSSEIMESNGSTSMASVCAGTMSLLAAGVPLKRPVAGISVGLVTEQNDQHEITSY 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             L DI G ED  G MDFK+ GT  G+T  Q+D+K+ GI  +I+  A+  AK GR  +L 
Sbjct: 483 KTLLDIIGSEDFYGDMDFKLCGTSEGVTGYQLDLKLPGIPLSILEEAIHVAKAGRTDVLK 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M++ ++ +  Q+    PR+E   IP D+I  +IG GGK I+ I  ++GA +NI++DGTV
Sbjct: 543 VMNEAIA-APAQMSPNAPRIETTKIPADRIGELIGPGGKNIKAIQAESGADINIEEDGTV 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I ++    ++ A E++  +    E+ ++Y G++V    FGAF+     +DGL+HIS+L+
Sbjct: 602 HIYAAKQEGLDRALELVTRMFKTIEIGELYTGKIVSTTTFGAFMEVLPGKDGLIHISELA 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             R AKT DVV  GD V  K +  DD+G++K+S++
Sbjct: 662 EGRTAKTEDVVSVGDVVTAKCIGIDDKGRVKMSIR 696


>gi|166030867|ref|ZP_02233696.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
           27755]
 gi|166029134|gb|EDR47891.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
           27755]
          Length = 707

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/693 (41%), Positives = 429/693 (61%), Gaps = 15/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y ER 
Sbjct: 18  EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERM 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  D + SP 
Sbjct: 78  YAVGKIPGGFNKREGKASENAVLTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ A+ A  +S +PF+GP+   QV  ++G++V+NP  ++   S L L V+ T++ V+
Sbjct: 138 LTAMLGAAIATTISDIPFDGPISTTQVGLVDGEFVINPTAEQKAVSDLALTVASTREKVI 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           M+E  AN++ E  ++DAI   H   + VI+ I  +   C K     E   +  + F+ ++
Sbjct: 198 MIEAGANEVPEQQMIDAIFKAHEVNQEVIKFIDTIVAECGKPKHSYESFAVPEELFAAMK 257

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E ++    E++  + F  +K  R + I  + +K+   F +++  W      +V++  Q K
Sbjct: 258 EVVT---PEEMEEAVFTDDKQTREENIRVVTEKLEEAF-ADNEEWLAILPDAVYQ-YQKK 312

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR  + +R ++A+V L+ R HGS++F RG TQ   + TL    + Q
Sbjct: 313 TVRKMILKDHKRPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICDICTLAPLSEAQ 372

Query: 362 YVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L   +    +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A FP
Sbjct: 373 RLDGLDEAETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEADFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSD 478
           Y +R VSE  ES+GS+S A+VC SS+ALM AGVPI   VAGI+ GLV     DD+++L+D
Sbjct: 433 YAIRTVSETFESNGSTSQASVCASSMALMAAGVPIKSAVAGISCGLVTGDTDDDYLVLTD 492

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + ++ RL+I++E MSK
Sbjct: 493 IQGLEDFFGDMDFKVAGTHEGITAIQMDIKIHGLTRAIIEEAIAKTRKARLYIMDEVMSK 552

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R ++GE+ P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V I  
Sbjct: 553 AINEPRAEVGEYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSICG 612

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    +E AR++I +I    E  ++ +G+V+ + +FGAFV F   ++G+VHIS++S ERV
Sbjct: 613 TDATGMEQARKLIYTIVTDFEAGQVLEGKVISIKEFGAFVEFAPGKEGMVHISKISKERV 672

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DV+  GDTV V  L  D  G+   SMK V
Sbjct: 673 NHVEDVLTLGDTVKVVCLGKDKMGRFSFSMKDV 705


>gi|312885678|ref|ZP_07745313.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
           DSM 18603]
 gi|311301885|gb|EFQ78919.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
           DSM 18603]
          Length = 715

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 296/692 (42%), Positives = 442/692 (63%), Gaps = 18/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DG+V+   G+T++LATVV     K+G DF PL+V+YQE+  A G+
Sbjct: 15  GRTIEIETGKLAKQADGSVVVKMGDTMLLATVVSTPEAKEGVDFLPLSVDYQEKYAATGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE+R ++ E+LISR++DR++RPLF   Y  + QV+I+++  D    P  ++ +
Sbjct: 75  IPGGFLRREARLSDYEVLISRLVDRALRPLFPDDYHADVQVMISLISADKNIMPDCLAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PF GP+   +V  I+G+ V+NP + D ++ SL+  V+G+   + MVE E
Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGKLVINPTVSDLERASLEFIVAGSASDINMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLEEEMSQMIKE 250
            +++ E  +++AI F H+  K  ++A  +LA   AK  +  + S + S   E++ + +  
Sbjct: 195 CSEIQEAELVEAIKFAHDAIKIQVQAQVELAAEVAKAKVKRVYSHEHSN--EDLKKQVFA 252

Query: 251 D-----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           D       ++     K  R +   +L+K++V+    +    ++      F D+Q   VR 
Sbjct: 253 DTYDKVYAIAASASSKDERSEAFKNLQKEVVASLGEDADDVSKFLAKKYFHDVQYDAVRN 312

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD+  R+DGR +  +R I ++VG L   HGS++F RG+TQA+  VTLG ++DEQ +D 
Sbjct: 313 LVLDEGKRLDGRTTTQIRPIWSEVGYLPAAHGSAVFTRGETQALTTVTLGAKDDEQMIDG 372

Query: 366 --LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             ++G Q+  F++HYNF   +TGEV       RREIGHG LA R++  VLP   + PYT+
Sbjct: 373 AFINGYQK--FLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKQVLPDENENPYTI 430

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISG 481
           RIVS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMGL+ +  G  + ILSDI G
Sbjct: 431 RIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITNPEGTKYAILSDILG 490

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT+ GI A QMD+KI G+S  ++  AL QAK GRLHILNEM K +  
Sbjct: 491 DEDHLGDMDFKVTGTEKGIVACQMDLKINGLSYEVLSKALDQAKEGRLHILNEMKKTIDI 550

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASS 598
            R       PR+  M I  + I  VIG GGK+I+ +  ++GA ++I   D+ G ++I   
Sbjct: 551 PRDDYKAHAPRIVSMRIDKEFIGAVIGPGGKIIQEMQRESGATISIEEKDNQGIIQIFGD 610

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I+ A   IR I   PEV +IY+G+V  +M FGAFV     +DGL+HIS++  +R+ 
Sbjct: 611 NKESIDKAVTRIRQIVAKPEVGEIYEGKVRSIMPFGAFVEIMPGKDGLLHISEIDHKRIE 670

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               + + GD V VKLLD D +GK+KLS K +
Sbjct: 671 TMDGIFEIGDEVRVKLLDVDKQGKLKLSRKAL 702


>gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae CWL029]
 gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae J138]
 gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae AR39]
 gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae
           CWL029]
 gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           AR39]
 gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           J138]
          Length = 694

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 312/688 (45%), Positives = 437/688 (63%), Gaps = 22/688 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ L  ETG+IARQ++GAVL   GET V A+      L D  DF PL V+YQE+  + GK
Sbjct: 13  GKILVFETGKIARQANGAVLVRSGETCVFASACA-VDLDDKVDFLPLRVDYQEKFSSTGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
             GG+++RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D +  P  +++ 
Sbjct: 72  TLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDGQVLPDPLAIC 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASAAL +S +P    V G ++  I+ Q+V+NP   E   S LDL ++GT++A+LM+E  
Sbjct: 132 AASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLAGTENAILMIEGH 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LEEEMSQMI 248
            +  +E+ VLDAI FGH      I  I K  ++  +E  V  SK+ S    L  E+   +
Sbjct: 192 CDFFTEEQVLDAIEFGHKH----IVTICKRLQLWQEE--VGKSKNLSAVYPLPAEVLTAV 245

Query: 249 KE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQA 300
           KE   D     F I +K V      ++++ ++     E     SS+N   I +  + +++
Sbjct: 246 KECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFN---IKAACKTLKS 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R ++ D+++R DGR   TVR I+ +   L RTHGS LF RG+TQ + V TLG+    
Sbjct: 303 DTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  + L+G   + F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP +A FP
Sbjct: 363 QRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RI S ITES+GSSSMA+VCG  LALMDAGVPIS P+AGIAMGL+ D    IILSDIS
Sbjct: 423 YTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILSDIS 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFK+AG+  GITA QMD+K+ GI+  IM  AL QAK+G   ILN M++ LS
Sbjct: 483 GLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALS 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             +  L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++++D G V I++SS 
Sbjct: 543 APKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDVNDLGVVSISASSA 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           + I  A+E+I  +    EV K Y+G+V  V+ FGAFV     ++GL HIS+ S +R+   
Sbjct: 603 SAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCHISECSRQRIENI 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           SDVVKEGD + VKLL  +++G++KLS K
Sbjct: 663 SDVVKEGDIIDVKLLSINEKGQLKLSHK 690


>gi|295116235|emb|CBL37082.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SM4/1]
          Length = 703

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/695 (40%), Positives = 432/695 (62%), Gaps = 19/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A Q++GA    YG+T VL+T       ++G DFFPL+V ++E+ Y
Sbjct: 7   MELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + SP  
Sbjct: 67  AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPEY 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP    Q+  I+G++++NP   + + S + L V+ T++ V+M
Sbjct: 127 TAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           +E  AN++ EDV++ AI   H   + +I+ I  +   C K     E   +  + F+ + E
Sbjct: 187 IEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFAAIRE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
            + Q   E++  + F  EK  R + I  + +++   F +++  W    GE +  +E    
Sbjct: 247 IVPQ---EEMEEAVFTDEKQKREENIRVITERLEEAF-ADNEEWLSVLGEAIYQYE---K 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GIT++QMD+KI G++  I+  A+ + +  RL+IL+E M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTHKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMK 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R ++G++ P++E + I P +I +V+G  GKVI  I+EQTG K++I+DDG V + 
Sbjct: 540 PVIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +  A I+ A  +IRSI    E  ++  G VV++M+FGAFV     +DG++HIS+LS +R
Sbjct: 600 GTDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           VAK  DVV  GD V VK+++ D  G+I LSMK  D
Sbjct: 660 VAKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGD 694


>gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae TW-183]
 gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           TW-183]
          Length = 694

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 313/700 (44%), Positives = 441/700 (63%), Gaps = 23/700 (3%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +  T+ I    G+ L  ETG+IARQ++GAVL   GET V A+      L D  DF PL 
Sbjct: 1   MNFQTISINLTEGKILVFETGKIARQANGAVLVRSGETCVFASACA-VDLDDKVDFLPLR 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  + GK  GG+++RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +
Sbjct: 60  VDYQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +  P  +++ AASAAL +S +P    V G ++  I+ Q+V+NP   E   S LDL ++
Sbjct: 120 DGQVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++A+LM+E   +  +E+ VLDAI FGH      I  I K  ++  +E  +  SK+ S 
Sbjct: 180 GTENAILMIEGHCDFFTEEQVLDAIEFGHKH----IVTICKRLQLWQEE--IGKSKNLSA 233

Query: 240 ---LEEEMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNE 288
              L  E+   +KE   D     F I +K V      ++++ ++     E     SS+N 
Sbjct: 234 VYPLPAEVLTAVKECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFN- 292

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I +  + +++  +R ++ D+++R DGR   TVR I+ +   L RTHGS LF RG+TQ 
Sbjct: 293 --IKAACKTLKSDTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQT 350

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TLG+    Q  + L+G   + F + Y F P + GEV R+G+P RREIGHG+LA +A
Sbjct: 351 LAVCTLGSEAMAQRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKA 410

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   LP +A FPYT+RI S ITES+GSSSMA+VCG  LALMDAGVPIS P+AGIAMGL+ 
Sbjct: 411 LSHALPDSATFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLIL 470

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           D    IILSDISG EDHLG MDFK+AG+  GITA QMD+K+ GI+  IM  AL QAK+G 
Sbjct: 471 DDQGAIILSDISGLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGC 530

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             ILN M++ LS  +  L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++++
Sbjct: 531 NDILNIMNEALSAPKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDVN 590

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G V I++SS + I  A+E+I  +    EV K Y+G+V  V+ FGAFV     ++GL H
Sbjct: 591 DLGVVSISASSASAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCH 650

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           IS+ S +R+   SDVVKEGD + VKLL  +++G++KLS K
Sbjct: 651 ISECSRQRIENISDVVKEGDIIDVKLLSINEKGQLKLSHK 690


>gi|86608913|ref|YP_477675.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502399|sp|Q2JLJ5|PNP_SYNJB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86557455|gb|ABD02412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 712

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 295/696 (42%), Positives = 431/696 (61%), Gaps = 18/696 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +T  I + GR + +  G +A Q+   V  T GET +L T       + G DF PL V+Y+
Sbjct: 4   YTRSISFYGREIDINIGLMAPQAGCGVWLTSGETSILVTATRQPG-RPGVDFMPLLVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGGYLRRE RP E   LISR+IDR IRPLF +  +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPIRPLFPEWLRDDVQVVATTLSVDDTV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+ ++ AS A+  + +PF GPV   +V  +  +++LNP   E + G LDL V+G  D
Sbjct: 123 PPDVLCILGASLAIHGARIPFNGPVAAVRVGLVKDEFILNPTYAEIEAGDLDLVVAGCAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFS 238
            V+MVE  ANQL E  V++AI FG    + +++A  ++       P+ +     + +  +
Sbjct: 183 GVIMVEAGANQLPEKDVVEAIEFGFEAIQELLKAQQQVLADLNITPVELPPPPKNEELIA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290
            +EE+  + I+  LR   F+ +K  R +Q+++LK K+ +                 N  E
Sbjct: 243 FVEEQAQEGIRSILR--QFL-DKTSREQQLEELKAKLEAQIQERPEGDPLRLYLLENPKE 299

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           + + F+ +  K++R  +L + VR+DGR  + VR +S +VGL+ R HGS+LF RG TQ + 
Sbjct: 300 LDNQFKALLKKLMRQQILQEGVRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLS 359

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + TLGT  D Q +D L       +M HYNF   + GE     +P RREIGHG LA RA+ 
Sbjct: 360 ITTLGTPGDAQELDDLHPVDEKRYMHHYNFPGFSVGETRPSRSPGRREIGHGALAERALV 419

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP+  +FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI  PV+G+AMGL+K+G
Sbjct: 420 PVLPKEEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLIKEG 479

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  IL+DI G ED LG MDFKVAGT +GITA+QMDMKI GI+ +++  A++QAK GR  
Sbjct: 480 DEVRILTDIQGIEDFLGDMDFKVAGTRAGITALQMDMKITGITVDVVEQAIRQAKAGREF 539

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M + ++  R QL +  PR+    + P+ I  +IG GGK +RGI E TGAKV+I DD
Sbjct: 540 ILDKMLETIAAPRPQLAKTAPRLLTFKVDPEDIGKIIGPGGKTVRGITEATGAKVDISDD 599

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GT+ ++SS   + EAAR MI ++    E  ++Y G+V +++  GAFV F   ++G++HIS
Sbjct: 600 GTITVSSSVGGQAEAARAMIENLVRRVEEGQVYLGKVTRIIPIGAFVEFLPGKEGMIHIS 659

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           QL+  RV +  D V   D V VK+   D +G+I L+
Sbjct: 660 QLAEYRVGRVEDEVAVEDEVVVKVRSIDHKGRINLT 695


>gi|197301798|ref|ZP_03166868.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
           29176]
 gi|197299238|gb|EDY33768.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
           29176]
          Length = 695

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/695 (41%), Positives = 426/695 (61%), Gaps = 19/695 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       +DG DFFPL+V Y ER 
Sbjct: 6   EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPRDGIDFFPLSVEYNERM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D + SP 
Sbjct: 66  YSVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMAVDQDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   +   S L L V+ T++ V+
Sbjct: 126 LTAMLGAALATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKVVSDLALTVASTKEKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  A ++ ED +++AI   H   + VI     +   C K+    + + F+ + +E+  
Sbjct: 186 MIEAGAKEVPEDKMIEAIFAAHELNQKVITFFDTIVAECGKKK--HEYQSFA-VPQELFD 242

Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDIQ 299
            I+E     ++  + F  +K  R + I  + +K+   F +++  W    GE V  +   Q
Sbjct: 243 AIQEIVTPAEMEEAVFTDDKQTREENIRVITEKLEEAF-ADNEEWLAKLGEAVYQY---Q 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR  + +R ++A+V L+ R HGS++F RG TQ   V TL    +
Sbjct: 299 KKTVRKMILKDHKRPDGRAIDQIRPLAAEVDLISRVHGSAMFTRGQTQICTVTTLAPLSE 358

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L  T+    +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+
Sbjct: 359 AQRLDGLDETETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEAE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV  +  DD+++L
Sbjct: 419 FPYAIRTVSETFESNGSTSQASVCASSMSLMSAGVPIKSAVAGISAGLVTGETDDDYLVL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +I++E M
Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK ++E R ++GEF P++  M I P +I +V+G  GK I  I+E+TG K++IDDDG V I
Sbjct: 539 SKAIAEPRAEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIEETGVKIDIDDDGNVSI 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +    +E A + I +I    E  ++++G+VV + +FGAFV F   ++G+VHIS+LS  
Sbjct: 599 CGTEKENMEKAAKYIHTIVTDYEAGQLFEGKVVSIKEFGAFVEFAPGKEGMVHISKLSKN 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV K  DVV  GD V V  L  D  G+   SMK V
Sbjct: 659 RVEKVEDVVSLGDVVKVVCLGKDKMGRFSFSMKDV 693


>gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9515]
 gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 721

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 292/703 (41%), Positives = 433/703 (61%), Gaps = 20/703 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L TG  A Q++GAV+   G+T +L T       K+  DF PL  +Y+E+ Y
Sbjct: 8   ITFDGREIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNK-KEAADFLPLICDYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG++RRE RP E   LI+R+IDR +RPLF    ++E Q++ + +  D      V
Sbjct: 67  AAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVPADV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +L  +PF GP+   +V  +   ++LNP   E ++G LD+ V+G+ + ++M
Sbjct: 127 LAVTGASLATLLGEIPFYGPMAAVRVGLLGDDFILNPSYREIEKGDLDIIVAGSPEGIVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK------MCAKEPIVIDSKDFSKLE 241
           +E  ANQLSE   ++AI FG+     +I+A   L K      +   EP V D+   + LE
Sbjct: 187 IEAGANQLSEQDTIEAIDFGYEAVTELIKAQENLLKDLGIKQVKPSEPEV-DNTLAAYLE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS 293
           +  ++ I  DL +  F   K  R  +++ +K ++ S   S          +S NE  I S
Sbjct: 246 KNCTKPI--DLVLKKFDQSKEERDLELEKIKLEVHSKIDSLKDDNQLKVLTSENEKLIHS 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
            F+ +  K++R+ +++   R+DGRD + VR ISA+ G+L +R HGS++F RG TQ +   
Sbjct: 304 DFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISAKAGILPKRVHGSAVFQRGLTQVLSTT 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA RAI PV
Sbjct: 364 TLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPV 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL+K+G +
Sbjct: 424 LPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKE 483

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+  +I+  A+++A+  RLHIL
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPVSIISDAIKKARPARLHIL 543

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M   + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G 
Sbjct: 544 EKMQDAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGI 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+VHISQL
Sbjct: 604 VTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQL 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 664 SEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVAQNGG 706


>gi|154506293|ref|ZP_02043031.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
 gi|153793432|gb|EDN75852.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
          Length = 718

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/698 (41%), Positives = 426/698 (61%), Gaps = 19/698 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       +DG DFFPL+V Y ER 
Sbjct: 28  EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNERL 87

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D + SP 
Sbjct: 88  YAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 147

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   + + S L L V+ T++ V+
Sbjct: 148 LTAMLGAAIATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVASTKEKVI 207

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  +++AI   H   + VI  I  +   C K      S     + EE+ +
Sbjct: 208 MIEAGANEVPEAQMIEAIFAAHELNQKVIAFIETIVAECGKAKHEYTS---CAVPEELFE 264

Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
            IKE     ++  + F  +K  R + I  + +K+   F +E+  W    GE V  +   Q
Sbjct: 265 AIKEIVPPAEMEEAVFTDDKQTREENIRVITEKLEEAF-AENEEWLAVLGEAVYQY---Q 320

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR  + +R ++A+  L+ R HGS++F RG TQ   V TL    +
Sbjct: 321 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTVTTLAPLSE 380

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+
Sbjct: 381 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAE 440

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV  +  DD+++L
Sbjct: 441 FPYAIRTVSETFESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLVTGETDDDYLVL 500

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E M
Sbjct: 501 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVM 560

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V I
Sbjct: 561 NKAIAEPRKEVGTYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSI 620

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +    +E A ++I +I    E  ++++G+V+ + +FGAF+ F   ++G+VHIS++S E
Sbjct: 621 CGTEKEAMEKAAKLIATIVTDFEAGQLFEGKVISIKEFGAFLEFAPGKEGMVHISKISKE 680

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           RV K  DV+  GD V V  L  D  G+   SMK V ++
Sbjct: 681 RVNKVEDVLNIGDVVKVVCLGKDKMGRFSFSMKDVAED 718


>gi|325479584|gb|EGC82680.1| polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 710

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/680 (42%), Positives = 429/680 (63%), Gaps = 3/680 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+  ++  G+ A Q++G      G+T +L T V     ++G DFFPL  ++QE+ YAVGK
Sbjct: 12  GKDFEVTIGKFAEQANGECYIRSGDTSMLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE + ++   LISR +DR +RPLF + Y N+ Q+I  V+  D ++ P  ++ +
Sbjct: 72  IPGGFLRREGKSSDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDPLTTI 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS AL +S +PF+GPV    V  +  + ++NP  +E ++ +L+L V+G + A+ MVE  
Sbjct: 132 GASIALGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSTLELTVAGKKGAINMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           AN+LSE  +L+A++    E   + + I  +     KE   +   + + L+ ++S+  ++D
Sbjct: 192 ANELSESDMLEAMLLALEEIGHISDFIQSIIDDIGKEKAEVSEIEETDLDRKISEDFEQD 251

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           ++ S    +K  R   I  ++++  + +  E+   +E EI    ++I  K VR ++   K
Sbjct: 252 IKDSIRTTDKTEREDNIFRIEEEAKAKYLEEYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGRD   +R +SA+ GLL R HGS LF RG TQ + VVTLG+  D Q +D L+  + 
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFKRGQTQVLSVVTLGSPADVQIIDGLNREEI 370

Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
               MH YNF P   G+V  +  P RREIGHGRLA RA+ PVLP  ++FPYT+R+VSE+ 
Sbjct: 371 TKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGRLAERALVPVLPDESEFPYTIRVVSEVL 430

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+DI G EDHLG MD
Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTDIQGLEDHLGDMD 490

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+QMDMKI GI+  ++  +L  A   R+ IL+ +   +   R  + ++ 
Sbjct: 491 FKVAGTRDGITALQMDMKISGITREVLEKSLADAHDARMRILDVIETAIKSPRADISDYA 550

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS +    + A EMI
Sbjct: 551 PRLYTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASDNGESGKKAIEMI 610

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++I   P+   IY G+VV++M+FGAFV     ++GL+HISQ+   RV K  DV+  GD V
Sbjct: 611 KAIVTDPKPGDIYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVEKVEDVLSVGDEV 670

Query: 671 WVKLLDFDDRGKIKLSMKVV 690
            VK+ + D +G+I LS K +
Sbjct: 671 KVKVTEIDRQGRINLSRKAL 690


>gi|227872010|ref|ZP_03990395.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
           F0268]
 gi|227842153|gb|EEJ52398.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
           F0268]
          Length = 695

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/694 (41%), Positives = 438/694 (63%), Gaps = 17/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++  R+  QS+GA L  YG+T VL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRTLTVDVDRVCAQSNGAALMHYGDTTVLSTCTASAKPRDGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGK PGG+ +RE R ++N IL +R+IDR +RPLF K Y+N+  +   V+  D ++SP +
Sbjct: 61  SVGKFPGGFKKREGRASDNAILTARVIDRPMRPLFPKDYRNDVLLNNLVLSVDQDASPEL 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           ++M+ +S +  LS +PF+GP    Q+  + G++V+NP   E   S L L V+ T++ V+M
Sbjct: 121 LAMLGSSLSTCLSDVPFDGPCATTQIGMVGGEFVVNPGNGEKAVSDLLLTVASTKEKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQ 246
           +E  AN+L E  +++AI   H+  + +I     + + C KE    + S    +L  +M +
Sbjct: 181 IEAGANELPEAKMIEAIYLAHDVNQQIIGFFESIIEECGKEKHSYVSSAIPEELFAKMKE 240

Query: 247 MIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED----IQAK 301
           ++K E++  + F  +K  R   +  L +++V  F  +       E +++  D     + K
Sbjct: 241 VVKPEEMEKAVFTDDKAERDANVSLLSERLVEAFQDDE------EALAILPDAIYQYEKK 294

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR  + +R + A+V LL R HGS++F RG TQ + + TL    + Q
Sbjct: 295 TVRKMILKDHKRPDGRAIDEIRKLEAEVDLLPRVHGSAMFKRGQTQIMNITTLAPLSEVQ 354

Query: 362 YVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            V+ L+  +     +H YNF   + GE      P RREIGHG LA +A+ PVLP   +FP
Sbjct: 355 KVEGLNEFETEKRYLHQYNFPGYSVGEAKASRGPGRREIGHGALAEKALIPVLPSVEEFP 414

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDD-FIILSD 478
           Y +R VSE  ES+GS+SMA+ C S ++LM AGVPI KPVAGI+ GLV  D DD +++L+D
Sbjct: 415 YAIRSVSETMESNGSTSMASTCASCMSLMAAGVPIKKPVAGISCGLVTGDSDDEYLVLTD 474

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT+ GITA+QMD+KI G++  I+  A+++A+  RL I+N  M +
Sbjct: 475 IQGLEDFFGDMDFKVTGTEDGITAIQMDIKIHGLTRPIVEEAIRRAREARLFIMNGVMKE 534

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R +L  + P++  M+I P++I +VIG  GK I GI+E+TG K++IDD+GTV I+ 
Sbjct: 535 AIAEPRAELSPYAPKILTMSINPEKIGDVIGKQGKTINGIIEETGVKIDIDDNGTVSISG 594

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++L ++E A+++I SI +  E  +I++G VV++MDFGAFV     +DG++HIS+LS +RV
Sbjct: 595 TNLPDLERAKKIIESIVNDIEPGQIFEGTVVRMMDFGAFVQLSPNKDGMIHISKLSDQRV 654

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            K  DVV  GD V VK+L+ D  G+I LSM+  D
Sbjct: 655 NKVEDVVHIGDKVRVKVLEVDKMGRINLSMRPQD 688


>gi|312879870|ref|ZP_07739670.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
           DSM 12260]
 gi|310783161|gb|EFQ23559.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
           DSM 12260]
          Length = 756

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/699 (41%), Positives = 433/699 (61%), Gaps = 27/699 (3%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  ++ AGR L  ETG++A+Q++ +V A YGETV+L T V     ++G DFFPL V+Y+
Sbjct: 3   QTFTLDLAGRTLSFETGKMAKQANASVFARYGETVILVTSVLAEKAREGLDFFPLLVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+ GKIPGG+++RE RP+E  IL  RM+DRSIR LF    +N+  V+  V+  D ++
Sbjct: 63  ERFYSAGKIPGGFIKREGRPSETAILSGRMVDRSIRSLFPDYLRNDVHVVATVLSVDQQN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           +P+V+++ AASAAL LS +P+EGP+   ++  ++G  V+NP   E    +LDL V+G + 
Sbjct: 123 APNVLAINAASAALALSDIPWEGPIGAVRIGCLDGNLVVNPTEQEIPLSTLDLLVAGHEG 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------PIVIDSKD- 236
            + MVE  A ++SE +++DA+   H E + ++  I ++     K       P  I   D 
Sbjct: 183 GITMVEAGAQEVSEALLVDALELAHREIRRIVAFILEMRAAAGKPKRDFPAPARIPEIDQ 242

Query: 237 --FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              S+L+ E+ Q ++        + +K  R   +  + +K V  F+  + +  +G +  V
Sbjct: 243 WVLSELDGEIYQAVQ--------VHDKMERAAALSKVSQKAVEQFAEAYPN-AKGYVAGV 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E+     +R ++L++  R DGR  + +R I  + GLL + HGS+LF RG+TQ++ V TL
Sbjct: 294 VEERVKDGLRRLLLEEGRRADGRKMDELRPICCETGLLPKAHGSALFTRGETQSLAVTTL 353

Query: 355 G-TREDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           G   ED+Q +D L   + +  F++HYNF P + GEV  M  P RREIGHG LA RA+ P+
Sbjct: 354 GMVGEDDQILDGLKHDEPSKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPM 413

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
            P  A FPY +R+VS+I ES+GSSSMA+VCG SL++MDAGVP+ K VAG+AMGLV DG  
Sbjct: 414 FPDEAAFPYVVRVVSDILESNGSSSMASVCGGSLSMMDAGVPLKKAVAGVAMGLVTDGSR 473

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G EDH G MDFKV GT  G+TA+QMD K GGI+  I+  AL QA+ GR+ IL
Sbjct: 474 VRILTDIQGLEDHYGDMDFKVTGTRDGVTALQMDNKAGGITRAILEQALSQAREGRMKIL 533

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M   L   R ++    PR+  + I P++IR VIG GGK IR IV QTGAKV+++DDG 
Sbjct: 534 DIMDGALQTPREEISPNAPRILTLTIDPEKIREVIGPGGKTIRSIVAQTGAKVDVEDDGR 593

Query: 593 VKIASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + +A+ +    EAA   ++ ITD+    +  + + G V +++ FG FV     ++GL+H+
Sbjct: 594 IYVAALTY---EAANHAVKIITDLTREVQAGETFLGTVTRMLSFGVFVEVLPGKEGLLHV 650

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           S++ST  + +  D    GD V V + + DD  ++ LS +
Sbjct: 651 SEVSTYHIPRLEDAFSIGDQVLVVVKEIDDMKRVNLSRR 689


>gi|300770058|ref|ZP_07079937.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762534|gb|EFK59351.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 729

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 296/693 (42%), Positives = 436/693 (62%), Gaps = 21/693 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G  ++L TG++A+Q+DG+V+   G+T++LATVV  R  K G DF PL+V+YQE+  A G+
Sbjct: 15  GTQIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y  +TQV+I+++  D +  P  ++ +
Sbjct: 75  IPGGFLRREARLSDYEVLISRLVDRALRPLFPENYHADTQVMISLISADKDIMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PF GP+   +V  I+GQ V+NP+L D ++ +L+  V+G+   + MVE E
Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLEFVVAGSAQDIGMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           AN++SE  +++AI F H   K  I A  +LA +          ++++   E  +  ++E 
Sbjct: 195 ANEISEAEMVEAIAFAHEAIKKQIAAQVELANLVG----ATTKREYN--HEPSNPELREA 248

Query: 252 LRVSCFI---------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           +  + +            K+ R ++  ++ ++       E     +      F D+Q   
Sbjct: 249 IFAATYDKVYAIAKSGSTKHERGEKFAEIGEEFFVTLGEEIDDDTKFLAKKYFHDVQYDA 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++LD+ +R+DGRD  TVR I ++V  L   HGS++F RG+TQ++  VTLG ++DEQ 
Sbjct: 309 VRNLVLDEGIRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQM 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D       N F++HYNF   +TGEV     P RRE+GHG LA R++  VLP  A+ PYT
Sbjct: 369 IDGAFINGYNKFILHYNFPAFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPADAENPYT 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480
           +R+VS+I ES+GSSSMATVC  +LALMDAGV +  PV+GIAMGL+ D     + ILSDI 
Sbjct: 429 IRVVSDILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTGKYAILSDIL 488

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT  GI A QMD+KI G+   ++  AL QAK  RLHIL EM+K +S
Sbjct: 489 GDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAKTIS 548

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIAS 597
             R       PR+  + I  + I  VIG GGK+I+ +  +TGA ++I   D+ G V+I +
Sbjct: 549 APREDYKPHAPRIIQIIIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVDNKGIVQIFA 608

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A I+ A   IR+I   PE+   Y+G+V  +M FGAFV     +DGL+HIS++  +R 
Sbjct: 609 DNKAAIDEASARIRAIAAKPEIGATYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRY 668

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
                + KEGD V VKLLD D +GK+KLS K +
Sbjct: 669 ETMDGIFKEGDKVTVKLLDIDKQGKMKLSRKAL 701


>gi|227486455|ref|ZP_03916771.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235636|gb|EEI85651.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 718

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/680 (42%), Positives = 425/680 (62%), Gaps = 3/680 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G   ++  G+ A Q++GA L   G+T +L T V     ++G DFFPL  ++QE+ YAVGK
Sbjct: 12  GYDFEVTIGKYAEQANGACLIQSGDTTLLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE + ++   LI+R +DR +RPLF + Y N+ Q+I  V+  D +  P  ++ +
Sbjct: 72  IPGGFLRREGKASDEATLIARQMDRPLRPLFPEDYYNDVQIIATVLSMDHDHLPDPLTTI 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191
            AS AL +S +PF GPV    V  ++G+ V+NP   D  +  L+L V+G + A+ MVE  
Sbjct: 132 GASIALGISDIPFNGPVGACMVGKVDGKLVVNPNEEDRKKSQLELTVAGRKGAINMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           AN+L E  +L+A++   +E   + + I  +          ++  + ++L+  +S+  +ED
Sbjct: 192 ANELDESEMLEAMLLALDEIGDISDFIQTIIDDIGLPKKEVEVHEETELDRLISEAFEED 251

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           ++ S    +K  R   I  ++++    F   +   +E EI    ++I  K VR ++   K
Sbjct: 252 IKSSIRTTDKTEREDNIFRIEEEAKEKFLEAYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R +SA+ G+L R HGS LF RG TQ + +VTLG+  D Q +D L+    
Sbjct: 311 IRPDGRELTEIRPLSAEAGVLPRVHGSGLFQRGQTQVLSIVTLGSPADSQLIDGLNIEDV 370

Query: 372 NDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
               MH YNF P   G+V  +  P RREIGHG LA RA+ PVLP    FPYT+R+VSE+ 
Sbjct: 371 EKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGHLAERALVPVLPDEKDFPYTMRVVSEVL 430

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+DI G EDHLG MD
Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTDIQGLEDHLGDMD 490

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+QMDMKI GI+E ++  +L  AK  R  IL+ +   +   R +L E+ 
Sbjct: 491 FKVAGTRDGITALQMDMKISGITEEVLRQSLADAKDARFRILDVIEAAIDAPRAELSEYA 550

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS+  A  + A EMI
Sbjct: 551 PRLYTIDIDPEKVRDVIGSGGKNINKIIDATGVKIETEDDGHITVASNDGASGKKAIEMI 610

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++I   P+   IY+G VV++M+FGAFV     ++GL+HISQ++  RVAK  D +K GD V
Sbjct: 611 KAIVTDPKPGDIYEGTVVRLMNFGAFVEIAIGKEGLLHISQIANHRVAKVEDELKVGDKV 670

Query: 671 WVKLLDFDDRGKIKLSMKVV 690
            VK+ + D +G+I LS K +
Sbjct: 671 TVKVTEIDRQGRINLSRKAL 690


>gi|325265390|ref|ZP_08132114.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
 gi|324029391|gb|EGB90682.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
          Length = 695

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/695 (41%), Positives = 423/695 (60%), Gaps = 19/695 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++ GR+A+Q++GA L  YG+T VL T       ++G DFFPL+V Y ER 
Sbjct: 6   EMELAGRTLRVDVGRVAKQANGAALMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  D + SP 
Sbjct: 66  YSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQDAVL 186
           + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP    +D   + L V+ T++ V+
Sbjct: 126 LTAMLGAAIATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKDISDMALTVASTKEKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  ++DAI   H   + VI  I  +   C K      S +   + EE+ +
Sbjct: 186 MIEAGANEVPEAQMIDAIFAAHELNQKVIAFIETIVAECGKPK---HSYESCAVPEELFE 242

Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
            IKE     ++  + F  +K  R + I  +  K+   F +E   W    GE V  +   Q
Sbjct: 243 AIKEIVTPAEMEEAVFTDDKQTREENIRLITAKLEEAF-AEKEEWLAVLGEAVYQY---Q 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L  + R DGR  + +R +SA+  L+ R HGS++F RG TQ   V TL    D
Sbjct: 299 KKTVRKMILKDQKRPDGRAIDQIRALSAETDLIPRVHGSAMFTRGQTQICTVTTLAPLSD 358

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP  ++
Sbjct: 359 AQRIDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSESE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476
           FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+++L
Sbjct: 419 FPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDTDDDYLVL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R  IL+E M
Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDEVM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V +
Sbjct: 539 NKTIAEPRPEVGPYAPKIVQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSV 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A ++ A +MI  IT   E  ++++G+V+ + +FGAF+ F   ++G+VHIS++S E
Sbjct: 599 CGTEQAGMDEAMKMIAVITTDFEAGQVFEGKVISIKEFGAFLEFAPGKEGMVHISKISKE 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R+ K  DV+K GD V V  L  D  G+   SM+ V
Sbjct: 659 RINKVEDVLKLGDIVKVVCLGKDKMGRFSFSMRDV 693


>gi|288818483|ref|YP_003432831.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787883|dbj|BAI69630.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752073|gb|ADO45556.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
          Length = 705

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/685 (41%), Positives = 441/685 (64%), Gaps = 26/685 (3%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLAT-VVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           P+ +ETG  A+ SDGAV+   G+T VL T VV +  L+D  DF PL+V+Y+E++ A GKI
Sbjct: 14  PIIIETGHYAKLSDGAVVVRQGDTAVLVTAVVSEEPLQD-IDFMPLSVDYREQSSAWGKI 72

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PGG+++RE +PT+ E+L+SR+IDR IRPLF + + ++  +    +  D +  P V+++  
Sbjct: 73  PGGFVKREGKPTDREVLVSRVIDRPIRPLFPEGFFHDVVITALTLSADDKYDPDVLAITG 132

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           ASAAL +S +PFEGP+ G +V  I G++V NP  +E Q + L++ ++ ++D+++MVE  A
Sbjct: 133 ASAALHISRIPFEGPIAGLRVCRIEGKFVANPTYEERQKADLEIILAVSKDSIIMVEGGA 192

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIKE 250
            ++ E+V  +A+ FG    K +I A  +L     +E + +    F    L +E+  +++E
Sbjct: 193 KEVDEEVFANALYFGLEAGKELISAQEEL-----REKVGVPKMSFEGIHLPQEIKDLMEE 247

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKK------MVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
                 F  E+ ++  +I D +++      ++  F   H    E   ++   ++ + +K+
Sbjct: 248 ------FCTERILKTFEIQDKRERKENTSAILREFIERHQIPEELHFKVGYHYKKLISKL 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R  +L++ VR+DGR  E +R IS ++   +R HGS++F RG TQA   VTLG+  + Q 
Sbjct: 302 MRQKVLNEGVRIDGRKPEEIRPISIEIKPFERPHGSAIFTRGQTQAFATVTLGSPHEAQL 361

Query: 363 VDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           V+S+  G     FM+HYNF P +TGE    G P RREIGHG LA RAI P++P   +FPY
Sbjct: 362 VESIYEGEVFKRFMLHYNFPPFSTGEAKPWGPPRRREIGHGALAERAIEPLIPPEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +RIVS I ES+GS+SMATVC  SLAL DAGVPI K VAGIAMGL+ +G+ ++ILSDI G
Sbjct: 422 IIRIVSNILESNGSTSMATVCAGSLALFDAGVPIKKHVAGIAMGLIMEGERYVILSDILG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DED LG MDFKVAGT  GIT++QMD+KI G+ + IM+ +L QAKRGRL+IL +M + + E
Sbjct: 482 DEDQLGDMDFKVAGTKDGITSVQMDIKIKGLKKEIMIESLMQAKRGRLYILEKMYEAIPE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PR+EI+ +P ++   +IG GGK ++ I E+TG  V + + G V + + S +
Sbjct: 542 PRKELSPYAPRIEIITVPEEKAMLIIGPGGKTVKDIKEKTGTTVWVLEGGKVSLTAPSKS 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            I+AA+E+I ++    EV K+Y+G+V +V  +G FV     + GL+H+S++    V    
Sbjct: 602 AIDAAKEIIENLIRDVEVGKVYEGKVTRVEPYGVFVEILPGKVGLLHVSKMEG-YVKDVR 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLS 686
            V   GDT+ VK+L+ D++G+ KL+
Sbjct: 661 AVFSVGDTLKVKVLEVDEQGRAKLT 685


>gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 707

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 283/699 (40%), Positives = 428/699 (61%), Gaps = 16/699 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+        +  ETG++A+ +DGAV    G+T+V+ T V    +K+GQDFFPL+V Y
Sbjct: 3   IHTITAALPNGDITFETGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A GK PGGY +RE RPTE EIL  RM DR +RPLF K Y  +TQ++  ++  D E
Sbjct: 63  KEKAAAAGKFPGGYFKREGRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIVALLLSADGE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +   ++S+  ASAAL +S +PF GPV   +V  +NGQ+VLNP   +   S LDL   G +
Sbjct: 123 NDADIISINGASAALCVSDIPFAGPVGAVRVGRVNGQFVLNPTHSQRAKSDLDLVYVGNK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFS 238
             V+M+E  AN+L E   + A+ F     + ++    E  +K  K+  + P+++   +  
Sbjct: 183 SEVIMIEGAANELPEAEFIKALAFAQEHVQVLVAVQEELRAKAGKVKREVPLMLVKDELL 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++  E++      +  + + P K  R K +  L+ ++ +   + +      EI   F+ +
Sbjct: 243 EIAYEVA---GSRIEGAIYRPSKVERSKAVGALRDEVEAAIKARYPESGNFEISQAFDYL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K  R  +LDK+ R DGR  + +R +S + GL+ R+HGS+LF RG+TQA+ + TL   +
Sbjct: 300 QKKAFRVAILDKQTRADGRGIDQLRPLSGETGLIPRSHGSALFARGETQALALATLAPLD 359

Query: 359 DEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D+ +G +    F++HYNF P + GE  R G  +RREIGHG LA R++ PV+P + 
Sbjct: 360 EAQEMDNYAGGETTKRFILHYNFPPFSVGETGRFGGQNRREIGHGALAERSVEPVVPSSE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD----- 472
            FPY +R+ SE+ ES+GS+SMA+VC   +AL+DAGVP+ +PVAGI++GLV + D      
Sbjct: 420 DFPYAMRVSSEVMESNGSTSMASVCSGVMALLDAGVPLKRPVAGISVGLVSEYDANNQMS 479

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            ++ + DI G EDH G MDFK+ GT+ G+T  Q+D+K+ GI  +I+  A+ +A  GR +I
Sbjct: 480 RYLTMLDIIGSEDHFGDMDFKLCGTELGVTGFQLDLKLPGIPLSILNEAIAKAVTGRTNI 539

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L  M   ++  +  L EF PR+E   I PD+I  +IG GGK I+ I  ++GA ++I+DDG
Sbjct: 540 LEVMKSAIAAPK-SLSEFAPRIEKTKINPDKIGELIGPGGKNIKAIQAESGADISINDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV I +SS   +E A E++ +     EV K Y G+VV   +FGAF+   G +DGL+HIS+
Sbjct: 599 TVLIYASSKEALERALELVNNTVGEVEVGKNYTGRVVSTTNFGAFMSLGGKKDGLIHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           L+  RV    DVVK GD V  K +  DD+G++KLS K V
Sbjct: 659 LADFRVNVVEDVVKVGDVVTAKCIGVDDKGRVKLSRKAV 697


>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
 gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
          Length = 747

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/709 (41%), Positives = 431/709 (60%), Gaps = 37/709 (5%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E  G  +K  TG +A+ ++GAV  + GET V        ++K GQDFFPLTV+Y+E+  
Sbjct: 7   VEVPGTNIKFTTGDMAKFANGAVTVSIGETNVFVAATAATTIKPGQDFFPLTVDYREKYS 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+ PGGY +RE +P+E EIL SR+ DR  RPLF + + NE QV+  ++  D      +
Sbjct: 67  AAGRFPGGYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQVVGLLLSADQLHEADI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
             +  ASAAL +S +P+ GP+   +V  I+GQ+V NP +++    SLDL   GT+  +LM
Sbjct: 127 AMVNGASAALAISDIPWAGPIGAVRVAQIDGQFVANPTIEQMFSSSLDLIYVGTEKDMLM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA----KMCAKEPIVIDSKDFSKLEEE 243
           +E  A+Q+ ED  ++A+ F H   +P+I AI +LA    K  A+  +V    +   + E 
Sbjct: 187 IEGSADQIPEDRFVEALEFAHQAIQPIIAAIKELAAKVGKPKAQFALVTAKPEARAIIER 246

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVSVFEDIQAK 301
           +  + +    +  F  EK VR   ++ LK +  +   +E    N    +I  VFED+Q K
Sbjct: 247 VVPIARVSEAIFGF--EKQVRGANVNALKVEAEAALKAELGEGNYAPHDISIVFEDLQYK 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R  +L++ +R D RD++T+R ++++VG L R HGS+LF RGDTQ +V  TLG  ++ Q
Sbjct: 305 AYRATVLERGLRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQ 364

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L+ G     F++HYNF P + GE  R G P RREIGHG LA R++ PVLP    FP
Sbjct: 365 DMDGLTGGATSKSFILHYNFPPYSVGETGRFGNPGRREIGHGALAERSLVPVLPPEDVFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----DG--DDFI 474
           YT+R+VS+I  S+GS+SMA++CG  LALMDAGVPI  PVAGI+ GL+     DG  D ++
Sbjct: 425 YTIRLVSDIMASNGSTSMASICGGCLALMDAGVPIIAPVAGISCGLMTSNKDDGSIDKWV 484

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
            ++DI G+EDH G MDFK+AGT SGIT  Q+D+KI G+   I   A+ QA+  R+ IL  
Sbjct: 485 TITDILGEEDHFGDMDFKLAGTTSGITGFQLDLKIKGLPIEIARTAIFQARDARVEILKA 544

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--DDDGT 592
           M   +   R  L  + PR++ + I P++I  +IG GGK IR IVE TGA+++I  DD G 
Sbjct: 545 MLGAIPAPRKALSTYAPRIQTIQIDPEKIGLLIGPGGKTIRRIVETTGAQIDIADDDSGK 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVP------------EVNKIYKGQVVKVMDFGAFVHFC 640
           V I S++      A  M R+I+++             EV KIY G+V  V +FGAFV   
Sbjct: 605 VFIYSNN------ADAMNRAISEIDGLCGGSGGGAQIEVGKIYTGRVSGVKEFGAFVECL 658

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
             ++GL HIS+L+  RV +T DVVK GD++ VK +  D+R  K++LS +
Sbjct: 659 PGKEGLCHISELADFRVRRTEDVVKVGDSITVKCIGIDERSNKVRLSRR 707


>gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
 gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
          Length = 721

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 296/704 (42%), Positives = 424/704 (60%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +++G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT +
Sbjct: 123 PADVLAVTGASLATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A   + K    E ++     +D+   +
Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQQAILKEAGIEQVIPTTPEVDATLPT 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGE 290
            LE+  ++ I E L+   F   K  R  ++D ++                    S N   
Sbjct: 243 YLEKNCTKAIGEVLK--QFDQTKGERDDKLDAIRTSTAETIQGLKDDDPVRVAVSTNGKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++    R+DGR  + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LPNSFKALTKKLMRQQIVKDGKRVDGRALDEVRTISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  N +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVNTVADAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMMEAIDTPRQGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAAEEAQRIIEGLTRKVNEGEVFTGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704


>gi|331091291|ref|ZP_08340132.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404738|gb|EGG84277.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 696

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/692 (41%), Positives = 427/692 (61%), Gaps = 13/692 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+V Y+E+ 
Sbjct: 6   EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D + SP 
Sbjct: 66  YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +   S L L V+ T+D V+
Sbjct: 126 LTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVASTRDKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           M+E  AN++ ED +++AI   H   + VI+ I  +   C K      S     +L E M 
Sbjct: 186 MIEAGANEVPEDKMIEAIFAAHEVNQQVIQFIDTIVAECGKPKHEYTSCAVPEELFEAMK 245

Query: 246 QMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
           +++  E++ V+ F  EK VR + +  +++K+   F +++  W E  GE +  +   Q K 
Sbjct: 246 EIVTPEEMEVAVFTDEKQVREENLRVIREKLEEAF-ADNEEWLEILGEALYQY---QKKT 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L    R DGR  + +R ++A++ L+ R HGS++F RG TQ   V TL    + Q 
Sbjct: 302 VRKMILKDHKRPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQICTVTTLAPLSEAQR 361

Query: 363 VDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FPY
Sbjct: 362 IDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDI 479
            +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+++L+DI
Sbjct: 422 AIRTVSETFESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLVTGDTDDDYLVLTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K+ R +IL+E M   
Sbjct: 482 QGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTKQARTYILDEVMHNA 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I D+G+V +   
Sbjct: 542 IAEPREEVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDEGSVSVCGV 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               +E A +MI  I    E  ++ +G+V+ + +FGAF+ F   ++G+VHIS++S ER+ 
Sbjct: 602 DAKAMEEAMKMIAIIVTDFEAGQVLEGKVISIKEFGAFLEFAPGKEGMVHISKISKERIN 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              DV+  GD V V  L  D  G+I  SMK V
Sbjct: 662 HVEDVLTLGDKVKVVCLGKDKMGRISFSMKDV 693


>gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 712

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/700 (42%), Positives = 446/700 (63%), Gaps = 17/700 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           + H  +IE+   R L LETGRIA+Q+DG+V+A  G+T+VL+T     S+ +  +FFPLTV
Sbjct: 4   EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF   + ++  V+  V+   
Sbjct: 63  DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +    V++ V +SAALMLSG PF GP    +V  ++G Y++NP + + ++  +DL V+G
Sbjct: 123 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            +DA++MVE EA ++SE+ +++A+   H   + + E   +L +  A EP   + +   ++
Sbjct: 183 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQ-AGEPDPFEWE-ADRV 240

Query: 241 EEEMSQMIKEDL--RVSCFIPEKYVR---CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            E++ Q ++E+   +V+  I   Y +      I DLK + V     + S   EG   S  
Sbjct: 241 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 300

Query: 296 EDIQAKV----VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            D   +V    +R +++++  R+DGRD   VRD+  +VG L R HGS++F RG+TQ +  
Sbjct: 301 RDAIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT +D Q VD +       F +HY F P + GE S +  P RREIGH  LA RA+ P
Sbjct: 361 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+  +FPYT+RI +++ ES+GSSSMA+VC  SLALMDAGVPI KPVAGIAMGLV++ D
Sbjct: 421 VIPEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G EDHLG MDFK+ GT  GITA QMDMKI G+S ++M+ AL+Q++  R HI
Sbjct: 481 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L+ M + ++E R +L    PR+  + I PD+I  VIG GGKV++ + E+T  ++ ++++ 
Sbjct: 541 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 600

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V IA+++  + EAA E I+ I  VPE  + Y G V  + DFGAFV     + GL+H
Sbjct: 601 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 660

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +S++  + V    D ++ GD V V LL+  D GK++L+ K
Sbjct: 661 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRK 700


>gi|225572738|ref|ZP_03781493.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039911|gb|EEG50157.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
           10507]
          Length = 745

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 282/694 (40%), Positives = 432/694 (62%), Gaps = 19/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 54  MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMY 113

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+  +   VM  D E +P +
Sbjct: 114 AVGKIPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLSNMVMSVDPECNPEI 173

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ +  +S +PF+GP    QV  ++G++++NP L + + S L L V+ T++ V+M
Sbjct: 174 PAMLGSAISTCISDIPFDGPCATTQVGLLDGEFIINPSLAQKKISDLQLTVASTREKVIM 233

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN+L ED +++AI   H+  + +I+ I K+ + C KE     S +   + EE+ Q 
Sbjct: 234 IEAGANELPEDKMIEAIYLAHDVNQEIIKFIDKIVEECGKEK---HSYESCAVPEELFQA 290

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E++ V+ F  EK +R + I  +  K+   F +++  W E  GE +  +   Q 
Sbjct: 291 IKEIVPPEEMEVAVFADEKQIRDENIRQITDKLEEKF-ADNEEWLEVLGEAIYQY---QK 346

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   V TL    + 
Sbjct: 347 KTVRKMILKDHKRPDGRAINEIRPLAAEVDIIPRVHGSAMFTRGQTQICTVTTLAPLSEA 406

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 407 QRLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEF 466

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV  +  DD+++L+
Sbjct: 467 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISAGLVTGETDDDYLVLT 526

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M 
Sbjct: 527 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVME 586

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K + E R  +G + P++  + I P +I +V+G  GK I  I+++TG K++I DDG V + 
Sbjct: 587 KCIHEPRTSVGPYAPKIVQIQIDPQKIGDVVGQRGKTINTIIDETGVKIDITDDGAVSVC 646

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             +  +++ A  +I+ IT   E  +++ G+VV + +FGAFV F   ++G+VHIS++  ER
Sbjct: 647 GLNQKDMDEAVRLIKVITTDFEAGQVFTGKVVSIKEFGAFVEFAPGKEGMVHISKICKER 706

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + +  DV+  GD V V  L  D  G+   SMK V
Sbjct: 707 INRVEDVLTLGDKVKVVCLGKDKMGRFSFSMKDV 740


>gi|194476549|ref|YP_002048728.1| polyribonucleotide nucleotidyltransferase [Paulinella
           chromatophora]
 gi|171191556|gb|ACB42518.1| polyribonucleotide nucleotidyltransferase [Paulinella
           chromatophora]
          Length = 724

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 299/714 (41%), Positives = 433/714 (60%), Gaps = 22/714 (3%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T+    S ++G DF PLT +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQASGSVLVECGDTAVLVTITRSNS-REGVDFLPLTCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE+RP E  ILI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRRENRPPERAILIARLIDRPMRPLFPSWMRDDIQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V++   AS A +++ +PF GP+   +V  +   ++LNP   E ++  LDL V+GT D
Sbjct: 123 PPDVLAATGASIATLIAKIPFHGPMATVRVGLLGDDFILNPSYREIERSDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL+E  V++AI FG+     +I+A +K+ +         E  V DS  F+
Sbjct: 183 GVVMVEAGANQLAEQDVIEAIDFGYEAVVELIKAQNKILQDMGIEYVKPEERVEDSTVFN 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGE 290
            LE E S+ I + L    +   K  R  Q+D +K ++    +S          ++ N   
Sbjct: 243 YLERECSKAIIDVL--GQYGKTKKERDSQLDTVKLQIGEKINSLKEDDTVRVAANTNAKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
             S ++++  K++R +++D   R+DGR    +R I + VG+L +R HGSSLF RG TQ +
Sbjct: 301 FNSSYKNLTKKIMRGLIVDTGKRIDGRSLSEIRPIISSVGILPKRVHGSSLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPATEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGVLAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SM  VC  +LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 APVLPDKENFPYVLRVVSEVLSSNGSTSMGAVCSGTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++  IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+    +  A+ QA+  RL
Sbjct: 481 GEEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKMTGLEMETIAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + + + R  L    PR+    I  + I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDKPREVLSPHAPRLLSFRIDSELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      + ++G V +++  GAFV     ++G++HI
Sbjct: 601 GGVVTIASHDGAAAEEAQRIIEGLTRRVSEGETFQGAVTRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN----TGKPIV 699
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+    T +PIV
Sbjct: 661 SQLSESRVEKVDDVVKVGDKVTVRVREIDNRGRINLTLRGVPQDNSHSTQEPIV 714


>gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM
           13855]
 gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM
           13855]
          Length = 722

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/700 (42%), Positives = 446/700 (63%), Gaps = 17/700 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           + H  +IE+   R L LETGRIA+Q+DG+V+A  G+T+VL+T     S+ +  +FFPLTV
Sbjct: 14  EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 72

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF   + ++  V+  V+   
Sbjct: 73  DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 132

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +    V++ V +SAALMLSG PF GP    +V  ++G Y++NP + + ++  +DL V+G
Sbjct: 133 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 192

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            +DA++MVE EA ++SE+ +++A+   H   + + E   +L +  A EP   +  +  ++
Sbjct: 193 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQ-AGEPDPFEW-EADRV 250

Query: 241 EEEMSQMIKEDL--RVSCFIPEKYVR---CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            E++ Q ++E+   +V+  I   Y +      I DLK + V     + S   EG   S  
Sbjct: 251 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 310

Query: 296 EDIQAKV----VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            D   +V    +R +++++  R+DGRD   VRD+  +VG L R HGS++F RG+TQ +  
Sbjct: 311 RDAIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 370

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT +D Q VD +       F +HY F P + GE S +  P RREIGH  LA RA+ P
Sbjct: 371 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 430

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+  +FPYT+RI +++ ES+GSSSMA+VC  SLALMDAGVPI KPVAGIAMGLV++ D
Sbjct: 431 VIPEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 490

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G EDHLG MDFK+ GT  GITA QMDMKI G+S ++M+ AL+Q++  R HI
Sbjct: 491 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 550

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L+ M + ++E R +L    PR+  + I PD+I  VIG GGKV++ + E+T  ++ ++++ 
Sbjct: 551 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 610

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V IA+++  + EAA E I+ I  VPE  + Y G V  + DFGAFV     + GL+H
Sbjct: 611 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 670

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +S++  + V    D ++ GD V V LL+  D GK++L+ K
Sbjct: 671 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRK 710


>gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
 gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
          Length = 708

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 290/701 (41%), Positives = 426/701 (60%), Gaps = 16/701 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRESRP E   LI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+++  AS A +L+ +PF GP+   +V  +   +VLNP   E ++  LDL V+GT  
Sbjct: 123 PPDVLAVTGASMATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDLDLVVAGTPQ 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-----FS 238
            V+MVE  ANQL E  V++ I FG+     +I+A   L K    E +  +++       +
Sbjct: 183 GVIMVEAGANQLPEQDVIEGIDFGYEAVSELIKAQQALLKDLGIEQVFPEARSDDPTLPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSE---HSSWNEGEIV 292
            LE+E S  I E L+   F   K  R  ++D +K ++   ++  + +    ++ +     
Sbjct: 243 FLEKECSDAIGEVLKQ--FSLTKAERDAKLDAIKAEVGEKIAALAEDDPIRTAASGKAFG 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVV 351
           + ++ +  K++R  ++ +  R+DGR+ + VR I A  G+L +R HGS+LF RG TQ +  
Sbjct: 301 NSYKGLTKKLMRAQIVGEGKRVDGRNLDEVRPIQAAAGVLPKRVHGSALFQRGLTQVLSC 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D Q +D L+ +    ++ HYNF P +TGE   M +P RREIGHG LA RA+ P
Sbjct: 361 ATLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSTGETKPMRSPGRREIGHGALAERALVP 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP    FPY LR+VSE   S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+G+
Sbjct: 421 VLPAKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGE 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G++   +  A+ QA+  RLHI
Sbjct: 481 EVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLAVGTVAEAVNQARPARLHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G
Sbjct: 541 LEKMLEAIDKPRDTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS   A  E A+ +I  +T      +++ G V +V+  GAFV     ++G++HISQ
Sbjct: 601 IVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFTGGVTRVIPIGAFVEILPGKEGMIHISQ 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           LS  RV K  DVV  GD V V++ + D+RG+I L+++ V Q
Sbjct: 661 LSEARVEKVEDVVNVGDQVTVRVREIDNRGRINLTLRGVPQ 701


>gi|210615800|ref|ZP_03290781.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
 gi|210150136|gb|EEA81145.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
          Length = 696

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/693 (40%), Positives = 428/693 (61%), Gaps = 19/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+V Y+E+ 
Sbjct: 6   EMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  D + SP 
Sbjct: 66  YAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +   S + L V+ T+D V+
Sbjct: 126 LTAMLGSAIATAISDIPFDGPTSTTQVGMIDGEFVFNPNAAQRAVSDMQLTVASTRDKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  +++AI   H   + VI+ I  +   C KE     S     + EE+  
Sbjct: 186 MIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTS---CAVPEELFV 242

Query: 247 MIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
            I+     E++ V+ F  EK VR + +  +++K+   F +E+  W E  GE +  +   Q
Sbjct: 243 AIREIVTPEEMEVAVFTDEKQVREENLRVIREKLEEAF-AENEEWLEILGEALYQY---Q 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR  + +R ++A+  ++ R HGS++F RG TQ   + TL    +
Sbjct: 299 KKTVRKMILKDHKRPDGRAIDQIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSE 358

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +
Sbjct: 359 AQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476
           FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+++L
Sbjct: 419 FPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLVTGDTDDDYLVL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K+ R +IL+E M
Sbjct: 479 TDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTKQARTYILDEVM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K + + R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I D+G+V +
Sbjct: 539 AKTIEQPRPEVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDEGSVSV 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                 +++ A +MI +I    E  ++++G+VV + +FGAF+ F   ++G+VHIS++S E
Sbjct: 599 CGVDAQKMDEAMKMIATIVTDFEAGQVFEGKVVSIKEFGAFIEFAPGKEGMVHISKISKE 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    DV+  GD V V  L  D  G+I  SMK
Sbjct: 659 RIKHVEDVLTLGDKVKVVCLGKDKMGRISFSMK 691


>gi|254444672|ref|ZP_05058148.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258980|gb|EDY83288.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
           DG1235]
          Length = 745

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/690 (40%), Positives = 422/690 (61%), Gaps = 18/690 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +   TG +A  + GAV  + GET +  +    +++++GQD+FPLTV+Y+E+  A G+IPG
Sbjct: 14  ITFSTGDVANLASGAVTVSTGETSLFVSATVAKTVREGQDWFPLTVDYREKYTAAGRIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           GY +RE RP+E EIL SR+ DR  RPLF K + NE Q+I  V+  D  +   ++ +  AS
Sbjct: 74  GYFKREGRPSEKEILTSRLCDRPCRPLFPKGFLNEVQIIGFVLSADQVNDADILMVNGAS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL +S +P+ GP+   +V  I+G +V NP ++E   S LDL   GT+D +LM+E  A+Q
Sbjct: 134 AALAISDIPWNGPIGAVRVGQIDGHFVANPTIEEQYASDLDLIYVGTEDEMLMIEGSADQ 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKE 250
           +SE+  L+A+ + H   +P+I  I +L +   KE    P+ +   D  ++   ++ ++ +
Sbjct: 194 ISEERFLEALEYAHKAIQPIIAGIKQLREEAGKEKKTFPLCVLEDDVRQI---VNSLVGD 250

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVVRTVMLD 309
            +  +C   +K  R  +ID+LK         ++   +N  ++    E++     R  +LD
Sbjct: 251 RIGEACAAGDKQERNAKIDELKVLAEGALQEKYGDDYNPAQLNMAMEELLEHTYRKSILD 310

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-G 368
             VR  GR    +R++ +QVG++ R HGS+LF RG+TQ +V+ TLG     Q +D+++ G
Sbjct: 311 NGVRSGGRKPNELRELKSQVGVVPRVHGSALFSRGETQGLVLTTLGPANQAQSLDAITGG 370

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                FM+HYNF P + GE  R G P RREIGHG LA R++ PV+P    FPY++RI SE
Sbjct: 371 PTTKSFMLHYNFPPFSVGETGRFGTPGRREIGHGALAERSLLPVVPSEDVFPYSIRISSE 430

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSDISGD 482
           I  S+GS+SMA++CG  L+LMDAGVPI+ PVAGI++GLV + D+        IL+DI G+
Sbjct: 431 IMASNGSTSMASICGGCLSLMDAGVPITDPVAGISVGLVSEFDENGKPAKHHILTDILGE 490

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFK+AGT +GIT  Q+D+KI G+  +I+  ++ Q++  RL IL  M+  L   
Sbjct: 491 EDHFGDMDFKIAGTKNGITGFQLDLKINGLPFDIVKASVAQSREARLEILANMATALEAP 550

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--GTVKIASSSL 600
           R ++    PR+  + I P++I  +IG GGK IR IVE TGA+V+I+DD  G V + ++S 
Sbjct: 551 REEVAATAPRITTVQINPEKIGALIGPGGKNIRRIVEITGAQVDINDDNSGRVNVYATSE 610

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A   I  +    E  KIY+G V    +FG FV     ++GLVHIS+L+  RV  T
Sbjct: 611 EAMKRALHEIDLVCGEIEEGKIYRGIVKATKEFGCFVEVLPGQEGLVHISELADFRVRNT 670

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DV K GD + VK L  D+RG+++LS K  
Sbjct: 671 EDVCKAGDEMVVKCLGVDERGRVRLSRKAA 700


>gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
 gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
          Length = 752

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/691 (41%), Positives = 426/691 (61%), Gaps = 16/691 (2%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+ GR L +E G IA+Q+ G+V+  Y +T VL+T   +   KD  DFFPLTV YQE+ YA
Sbjct: 21  EFHGRTLTVENGEIAKQAGGSVVIRYADTTVLSTATANNQAKD-TDFFPLTVLYQEKMYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+ RRE RPTE+  L +R+IDR IRPLF++ ++NE Q++  V+  D ++S  + 
Sbjct: 80  AGKIPGGFTRREGRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCDPDASSEMA 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           S+  +S AL +S +PF GPV G  V  ++G+Y++NP +++++ S L++ V+GT++A+ MV
Sbjct: 140 SLFGSSLALCISDIPFNGPVAGVMVARVDGEYIINPSVEQEKNSDLNVTVAGTKNAINMV 199

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           E  A ++SE+ +L A++ GH+  K +     ++   CAKE + +   + + +   + Q++
Sbjct: 200 EAGAKEVSEEDMLKALMIGHDAIKELCAIQEEVIAACAKEKMEVSLYEINPI---VKQLV 256

Query: 249 KED----LRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHSSWNEGEIVSVFE---DI 298
            E     +R +  I  K  R  +ID+L  +M   V+    E     E  +    E   ++
Sbjct: 257 DEKGAQRIREAVSIKGKLERYGKIDELIAEMEEEVAKLEWEDDKAREKAVKQAHEYGVEV 316

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A  VR ++ ++K+R DGR  + +R + +QV LL R HGS++F RG+TQ + V TLG   
Sbjct: 317 EAGEVRRLISEEKIRPDGRGLDELRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGPLS 376

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+      FM  YNF P + GEV RM +P RREIGHG L  RA+  VLP   +
Sbjct: 377 DAQLIDDLTTETEKRFMHQYNFPPFSVGEVGRMSSPGRREIGHGALGERALLQVLPTAEE 436

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R  +E+ ES+GSSS A++C  +++LM AGVPI   VAG+AMGL+  GD + IL+D
Sbjct: 437 FPYAIRTCAEVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSILTD 496

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT +GITA+QMD+K+ GISE I+  AL QA +GR+ IL+ M   
Sbjct: 497 IQGMEDHYGDMDFKVAGTRNGITALQMDIKVTGISEEILREALAQAHKGRMEILDNMETA 556

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIAS 597
           +S  R  + E+ P++  M IP ++IR VIG GG+ I  I+    G K++I DDG      
Sbjct: 557 ISTPRDHVSEWAPKMAQMMIPVEKIRVVIGKGGEQIDKIIAACDGIKIDITDDGKCVFYH 616

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I+ A +++  +    +V  IY   V++V +  AFV      D L+H+S+L+  RV
Sbjct: 617 TKQDMIDKAMQIVGDLIREAKVGDIYDATVLEVRESFAFVMLFPGTDALLHVSELAWNRV 676

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K  D +  GD + VK+   D  GK+K+S K
Sbjct: 677 EKIQDALHVGDVIKVKVTGVDATGKVKVSAK 707


>gi|227538513|ref|ZP_03968562.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241432|gb|EEI91447.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 729

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/693 (42%), Positives = 435/693 (62%), Gaps = 21/693 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G  ++L TG++A+Q+DG+V+   G+T++LATVV  R  K G DF PL+V+YQE+  A G+
Sbjct: 15  GTQIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y  +TQV+I+++  D +  P  ++ +
Sbjct: 75  IPGGFLRREARLSDYEVLISRLVDRALRPLFPENYHADTQVMISLISADKDIMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PF GP+   +V  I+GQ V+NP+L D ++ +L+  V+G+   + MVE E
Sbjct: 135 AASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLEFIVAGSAQDIGMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           AN++SE  +++AI F H   K  I A  +LA +          ++++   E  +  ++E 
Sbjct: 195 ANEISETEMVEAIAFAHEAIKKQIAAQVELANLVG----ATTKREYN--HEPSNPELREA 248

Query: 252 LRVSCFI---------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           +  + +            K+ R ++  ++ ++       E     +      F D+Q   
Sbjct: 249 IFAATYDKVYAIAKSGSTKHERGEKFAEIGEEFFVTLGEEIDDDTKFLAKKYFHDVQYDA 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++LD+ +R+DGRD  TVR I ++V  L   HGS++F RG+TQ++  VTLG ++DEQ 
Sbjct: 309 VRNLVLDEGIRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQM 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D       N F++HYNF   +TGEV     P RRE+GHG LA R++  VLP  A+ PYT
Sbjct: 369 IDGAFINGYNKFILHYNFPAFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPADAENPYT 428

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDIS 480
           +R+VS+I ES+GSSSMATVC  +LALMDAGV +  PV+GIAMGL+ D     + ILSDI 
Sbjct: 429 IRVVSDILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTGKYAILSDIL 488

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT  GI A QMD+KI G+   ++  AL QAK  RLHIL EM+K +S
Sbjct: 489 GDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAKTIS 548

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIAS 597
             R       PR+  + I  + I  VIG GGK+I+ +  +TGA ++I   D+ G V+I +
Sbjct: 549 APREDYKPHAPRIIQIIIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVDNKGIVQIFA 608

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +   I+ A   IR+I   PE+   Y+G+V  +M FGAFV     +DGL+HIS++  +R 
Sbjct: 609 DNKTAIDEATARIRAIAAKPEIGATYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRY 668

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
                + KEGD V VKLLD D +GK+KLS K +
Sbjct: 669 ETMDGIFKEGDKVTVKLLDVDKQGKMKLSRKAL 701


>gi|225388763|ref|ZP_03758487.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
           DSM 15981]
 gi|225045170|gb|EEG55416.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
           DSM 15981]
          Length = 702

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 290/701 (41%), Positives = 429/701 (61%), Gaps = 17/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  +++++  AGR L +E GR+A Q++GAV   YG+TVVL+T       ++G DFFPL+
Sbjct: 1   MFKSYSMDL--AGRKLTVEVGRVAAQANGAVFMHYGDTVVLSTATASTKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V ++E+ YAVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEFEEKLYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNIVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D   SP + +M+ ++ A  +S +PF GP    QV  I+G++++NP  D+   S L L V+
Sbjct: 119 DPNCSPELTAMLGSAIATSISDIPFAGPCATTQVGMIDGEFIINPTADQKHVSDLALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ V+M+E  AN++ ED +++AI       K +I  I  +   C KE    +S     
Sbjct: 179 STREKVIMIEAGANEVPEDKMIEAIFKADQVNKEIIAFIDTIVAECGKEKHTYES---CA 235

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + EE+   IKE     ++  + F  +K  R   I  + +++   F +E+  W  G I   
Sbjct: 236 IPEELFAAIKELVPPAEMEEAVFTDDKQTREGNIRAISERLEEAF-AENEEW-LGLIDEA 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L    R DGR    +R ++A+V LL R HGS +F RG TQ +   TL
Sbjct: 294 VYQYQKKTVRKMILKDHKRPDGRAVTEIRRLAAEVDLLPRVHGSGMFTRGQTQILNACTL 353

Query: 355 GTREDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 354 APLSEAQRLDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALVPVL 413

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD 471
           P   +FPY +R VSE  ES+GS+S A++C S+L+LM AGVPI   VAGI+ GLV  +  D
Sbjct: 414 PSEEEFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKDMVAGISCGLVTGETDD 473

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+++L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + +  R+HI
Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVAGTKKGITAIQMDIKIHGLTRPIIEEAISRTREARIHI 533

Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L++ M  V+SE R  L  + P++  + I P +I +V+G  GKVI  I+E+TG K++I+DD
Sbjct: 534 LDDVMRPVISEPRKHLSPYAPKIIQINIDPQKIGDVVGKQGKVINKIIEETGVKIDINDD 593

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G+V +  +  A I  A ++I+SI    E   I+ G+VV++M+FGAFV     +DG++HIS
Sbjct: 594 GSVNVCGTDEAMINRAVQIIKSIVTEIEPGMIFTGKVVRLMNFGAFVELAPGKDGMIHIS 653

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +LS +RV    DVV  GD V VK+++ D  G+I LSMK  D
Sbjct: 654 KLSEKRVNTVEDVVNIGDEVTVKVIEVDKMGRINLSMKPSD 694


>gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 730

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/701 (40%), Positives = 440/701 (62%), Gaps = 23/701 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E+ G+ L +E G++A+Q+DGAV+  Y ++V+L TV  +     G DF PLTV YQE+ 
Sbjct: 7   EREFFGQKLVIENGKMAKQADGAVVLRYADSVLLTTVNGNEQAVPGTDFLPLTVEYQEKF 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+L+RESRP++N +L +R+IDR IRPLF    +NE QVI+ V+  D ++ P 
Sbjct: 67  YAAGKIPGGFLKRESRPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDNPPD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +  ++A+S  L +S +PFEG V G QV Y++G+YV+ P  DE ++  LD+ V+GT+DAV 
Sbjct: 127 IWGIMASSLVLNISPIPFEGIVAGVQVGYVDGKYVVFPSADELERSELDIVVAGTEDAVA 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEE 242
           MVE EA ++SE+V++ A+   H   K ++    E IS+      K  + I +     LE 
Sbjct: 187 MVEGEAKEVSEEVMVGALEAAHEAIKSLVAFQKEIISEF--QTEKWELEIPAAPEGFLES 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEI-------VSV 294
             + + +  L      P K  + K +   + +++  F      +W+E EI          
Sbjct: 245 FDTLVDRNKLAEIMLTPGKKNKDKALKTYRDELIEQFIGKAKETWSEEEIEDNIGFVKDF 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + DI+ KV+R  ++++ VRMDGR    +R I+ ++ LL R HGS+LF RG+TQ++ +VTL
Sbjct: 305 YHDIEKKVMRRRVIEEDVRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVTL 364

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   DEQ VD++       FM+HYNF P +TGEV R+  P RREIGHG LA R++  ++P
Sbjct: 365 GATMDEQIVDTMFEEGSKSFMLHYNFPPFSTGEVKRLRGPGRREIGHGHLAERSLKNIVP 424

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSE+ ES+GSSSMATVC  SL+LM AGVP+ K VAG+AMG++++ +  +
Sbjct: 425 NGESFPYTIRVVSEVLESNGSSSMATVCSGSLSLMAAGVPMEKHVAGVAMGMIQEPEKTV 484

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G+EDH+G MDFKV GT  GITA QMD+K+ G+S  IM  AL+QA+  RL IL+ 
Sbjct: 485 VLTDILGNEDHMGDMDFKVTGTRDGITAFQMDVKVSGVSSEIMTKALEQARLARLKILDL 544

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-V 593
           M + + E R  + ++ P +  + +P ++I  +IG GGKVI+ +  +  + + IDD+ +  
Sbjct: 545 MYEAIPEPRKFVSDYAPIIRTINLPYEKIGEIIGPGGKVIKKLSSEYDSTIFIDDERSQA 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KI  S+  +++   ++I +I    +  ++++G++ +   +G FV     + GL+HIS++ 
Sbjct: 605 KIVGSNREKLDQLEKVIDAIISEVKPGQLFEGKISRAEAYGFFVEIAPGKTGLLHISKMG 664

Query: 654 TERVAKTSDVVKE---GDTVWVKLLDFDDRGKIKLSMKVVD 691
               A   D ++E   GDT+ V++   D  GKI L ++ V+
Sbjct: 665 ----ASGKDFLREHKVGDTIAVEVAGTDQMGKISLKLEGVE 701


>gi|298373282|ref|ZP_06983271.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298274334|gb|EFI15886.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 741

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/699 (42%), Positives = 451/699 (64%), Gaps = 28/699 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+ T G+T++LATV   +    G DF PL+V+Y+E+  A G+
Sbjct: 13  GREIIIETGKLAKQADGAVMVTLGKTMLLATVCSAQEANPGTDFMPLSVDYKEKFSACGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+LRRE RP++ EILISR++DR++RPLF   Y  ET V + +   D   +P  ++ +
Sbjct: 73  FPGGFLRREGRPSDYEILISRLVDRALRPLFPDDYHAETFVNVTLYSADGVDAPDALAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I+G++V+NP +++ Q + L+L V+ T D ++MVE E
Sbjct: 133 AASAALAVSDIPFGGPISEVRVARIDGEFVINPTMEQLQNADLELIVAATLDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKP-------VIEAISKLAK--MCAKEPIVIDSKDFSKLEE 242
             ++SEDV+L+AI   H   KP       ++EA  K  K   C ++    + +D  +   
Sbjct: 193 MKEVSEDVLLNAIKAAHEAIKPQCQVQLDMMEAAGKTEKRLYCHED----NDEDLRRDVR 248

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301
           E +     D+ VS    +K+ R    + + ++ ++    E ++     ++   + D++  
Sbjct: 249 EKTYQKAYDIAVSGNA-DKHCRTAAFEAIVEEYIATIPEEEATDERKALIKRYYHDVEKD 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD+  R+DGR +  +R I ++V  L  THGS++F RG+TQ++  VTLGT+ DE+
Sbjct: 308 AMRRAILDEGKRLDGRKTNEIRPIWSEVDYLPATHGSAIFTRGETQSLSTVTLGTKLDEK 367

Query: 362 YVDS--LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            +D   ++GT R  F++HYNF P +TGE        RRE+GHG LA RA+ PV+P+   +
Sbjct: 368 IIDEALITGTDR--FLLHYNFPPFSTGEARPSRGVGRREVGHGNLALRALKPVIPE--NY 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILS 477
            Y +R+VS+I ES+GSSSMATVC  +LALMDAGVPISKPV+GIAMGL+ +  G ++ +LS
Sbjct: 424 KYCIRVVSDILESNGSSSMATVCAGTLALMDAGVPISKPVSGIAMGLISENKGKNYAVLS 483

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QA  GR+HIL ++++
Sbjct: 484 DILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILENALRQAHEGRMHILGKITE 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTVK 594
            ++E R  L    PR+E++ IP + I  VIG  GK+I+GI  +TGA ++     + G V+
Sbjct: 544 TIAEPRADLKPHVPRIEVITIPKEFIGAVIGPQGKIIQGIQAETGATISIEEEGEVGIVE 603

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA+++   IEAA E +R IT +PE  K+Y   V  VM +G FV F   ++GL+HIS++  
Sbjct: 604 IAAANRDSIEAALEKVRRITAMPEAGKVYSSTVKSVMPYGVFVEFMPGKEGLLHISEIDY 663

Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            + A   +  +KEGDT  VKL++ D  GK +LS +V+ +
Sbjct: 664 NKYATIEETGLKEGDTFDVKLIEIDKSGKYRLSSRVLKE 702


>gi|160880894|ref|YP_001559862.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           phytofermentans ISDg]
 gi|187610260|sp|A9KNK6|PNP_CLOPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160429560|gb|ABX43123.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           phytofermentans ISDg]
          Length = 698

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/690 (41%), Positives = 426/690 (61%), Gaps = 14/690 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A Q++GA    YG+TVVL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLSVDVGRVAAQANGAAFMHYGDTVVLSTATASDKPREGIDFFPLSVEYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGK+PGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D + SP +
Sbjct: 67  AVGKVPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ ++ +S +PF+GP    QV  ++G+ V NP   +   S L L V+ T+D V+M
Sbjct: 127 TAMLGSAISVAISDIPFDGPCATTQVGLVDGELVFNPTAAQKAVSDLALTVASTRDKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED +L+AI   H   + VI+ I K+     KE     S    ++ EEM   
Sbjct: 187 IEAGANEVPEDKMLEAIFAAHEVNQEVIQFIDKIVAEFGKEKHGYIS---CEIPEEMFAA 243

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           IK     E +  + F   K VR + I ++K K+   F   +  W      +V++  Q K 
Sbjct: 244 IKEVVTPEQMEEAVFTDVKQVREENIREIKNKLAEVFEESNPEWLHLIDEAVYK-YQKKT 302

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L    R DGR+   +R ++A+V +L R HGS +F RG TQ + V TL    + Q 
Sbjct: 303 VRKMILKDHKRPDGREIHQIRRLAAEVDMLPRVHGSGMFTRGQTQILTVTTLAPLSEAQK 362

Query: 363 VDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +D L   +++  +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+FPY
Sbjct: 363 LDGLDEAEKSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEAEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDI 479
            +R VSE  ES+GS+S A+VC S+L+LM AGVPI K VAGI+ GLV     DD+++L+DI
Sbjct: 423 AIRTVSETMESNGSTSQASVCASTLSLMAAGVPIKKQVAGISCGLVTGDTDDDYLVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +I+NE M+  
Sbjct: 483 QGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRAIIEEAIRRTKEAREYIINEVMTPA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R ++G++ P++  + I P +I +V+G  GK I  I+EQTG K++I+D+G V +  +
Sbjct: 543 IAEPRTEVGKYAPKIIQIQIDPQKIGDVVGQRGKTINAIIEQTGVKIDINDEGAVSVCGT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  MIR+I    E  ++++G+V+ + +FGAF+ F   ++G+VHIS++S ER+ 
Sbjct: 603 DKDMMDKAINMIRTIVTEFEEGQVFEGKVISIKEFGAFLEFAPGKEGMVHISKISKERIN 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
              DV+  GD V V  L  D  G+I  S+K
Sbjct: 663 HVEDVLTLGDVVKVVCLGKDKMGRISFSIK 692


>gi|172035539|ref|YP_001802040.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. ATCC
           51142]
 gi|254782715|sp|B1WQ52|PNP_CYAA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171696993|gb|ACB49974.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 715

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 300/695 (43%), Positives = 442/695 (63%), Gaps = 20/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GAVL   G+T VL T    +  ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTTKG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILISR+IDR +RPLF   ++N+ Q+I   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRNDIQIIATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  +S A++ + +PF GP+   +V  I   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGSSIAVIQAQIPFYGPMAAVRVGLIGDDFIINPTYREVENGDLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK-EPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I    E + +L    AK EP  +D      + +
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVRDLIGAQYEIMEELGMEIAKAEPPSVDEALEKFISD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------HSSWNEGEIVS 293
             +  IK+ L    +   K  R   +D++K+  +    +E          +S +   + +
Sbjct: 247 RAADSIKKVL--VQYDLGKAERDSALDNIKETAIEEAIAELPEDDPIKVTTSEDPKAVGN 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
           +++ +  K++R+ ++D+ +R+DGR  + VR IS +VGLL  R HGS+LF RG TQ   + 
Sbjct: 305 LYKGLTKKLMRSQIVDEGIRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLA 364

Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q + D L       ++ HYNF P + GE   + +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAILP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++G 
Sbjct: 425 VLPPQDEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIREGK 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A++QA   RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKITGLSMDVVAKAIEQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M  V+ + R +L  F PR+  M I P+QI  VIG GGK I+ I EQTG+K++I DDG
Sbjct: 545 LDKMLAVIDQPRPELSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+    + E AR++I ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIAAIQAKKAERARDLIFNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV K  + V  GD V VK+ + D++G++ L+
Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLT 699


>gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
 gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
          Length = 721

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 296/704 (42%), Positives = 422/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+S+  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT +
Sbjct: 123 PADVLSVTGASMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239
            ++MVE  ANQL E  V++AI FG+     +I+A   + K    E +  ++ D       
Sbjct: 183 GIVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQESILKDAGIEQVKPEAPDADTTLPL 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGE 290
            LE+  S+ I E L    F   K  R  ++D ++                 +  S N   
Sbjct: 243 YLEKACSKSIGEVL--GQFAQSKADRDSKLDAIRSNTAEAIEGLKDTDPVRQLVSSNSKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++    R+DGR  + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LPTSFKALTKKLMRQQIVKDGKRVDGRTLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPNTEKTYLHHYNFPPYSVGETKPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G++ N +  A+ +A+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLAMNTIAEAINKARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMMEAIDTPRDGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  + A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGAITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704


>gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
 gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
          Length = 745

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 295/700 (42%), Positives = 445/700 (63%), Gaps = 17/700 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           + H  +IE+   R L LETGRIA+Q+DG+V+A  G+T+VL+T     S+ +  +FFPLTV
Sbjct: 37  EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF   + ++  V+  V+   
Sbjct: 96  DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +    V++ V +SAALMLSG PF GP    +V  ++G Y++NP + + ++  +DL V+G
Sbjct: 156 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 215

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            +DA++MVE EA ++SE+ +++A+   H   + + E   +L +  A EP   +  +  ++
Sbjct: 216 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQ-AGEPDPFEW-EADRV 273

Query: 241 EEEMSQMIKEDL--RVSCFIPEKYVR---CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            E++ Q ++E+   +V+  I   Y +      I DLK + V     + S   EG   S  
Sbjct: 274 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 333

Query: 296 EDIQAKV----VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            D   +V    +R +++++  R+DGRD   VRD+  +VG L R HGS++F RG+TQ +  
Sbjct: 334 RDAIGEVEKDEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 393

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT +D Q VD +       F +HY F P + GE S +  P RREIGH  LA RA+ P
Sbjct: 394 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 453

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+   FPYT+RI +++ ES+GSSSMA+VC  SLALMDAGVPI KPVAGIAMGLV++ D
Sbjct: 454 VIPEQDAFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 513

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G EDHLG MDFK+ GT  GITA QMDMKI G+S ++M+ AL+Q++  R HI
Sbjct: 514 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 573

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L+ M + ++E R +L    PR+  + I PD+I  VIG GGKV++ + E+T  ++ ++++ 
Sbjct: 574 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 633

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V IA+++  + EAA E I+ I  VPE  + Y G V  + DFGAFV     + GL+H
Sbjct: 634 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 693

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +S++  + V    D ++ GD V V LL+  D GK++L+ K
Sbjct: 694 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRK 733


>gi|53715606|ref|YP_101598.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           YCH46]
 gi|60683550|ref|YP_213694.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           NCTC 9343]
 gi|253566582|ref|ZP_04844035.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
 gi|265767451|ref|ZP_06095117.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
 gi|81313402|sp|Q5L7Z7|PNP_BACFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81381032|sp|Q64N73|PNP_BACFR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52218471|dbj|BAD51064.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           YCH46]
 gi|60494984|emb|CAH09802.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
           fragilis NCTC 9343]
 gi|251944754|gb|EES85229.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
 gi|263252756|gb|EEZ24268.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
 gi|301165064|emb|CBW24632.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
           fragilis 638R]
          Length = 708

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 440/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIEL-GDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP  D+ +Q  +D+ V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQADMDIMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           + ++MVE E +++SE  +L+A+   H   K   +A  +L +M  K      +       E
Sbjct: 185 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK------TVKREYCHE 238

Query: 243 EMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           E  + +++ +  +C+             K+ R    D ++ +  + FS E        I 
Sbjct: 239 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P+   +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IPE--DYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           IL ++ + +SE R +L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 537 ILGKIEETISEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+ G ++I+ ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701


>gi|257066122|ref|YP_003152378.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           DSM 20548]
 gi|256798002|gb|ACV28657.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           DSM 20548]
          Length = 711

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/680 (41%), Positives = 428/680 (62%), Gaps = 3/680 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+  ++  G+ A Q++G      G+T +L T V     ++G DFFPL  ++QE+ YAVGK
Sbjct: 12  GKDFEITIGKFAEQANGECYIKSGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+L+RE + ++   LISR +DR +RPLF + Y N+ Q+I  V+  D ++ P  ++ +
Sbjct: 72  IPGGFLKREGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDPLTTI 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS AL +S +PF+GPV    V  +  + ++NP  +E ++ SL+L V+G + A+ MVE  
Sbjct: 132 GASIALGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSSLELTVAGKKGAINMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           A ++SE  +L+A++    E   + + I  +     KE I +   + ++L+ ++S   +E+
Sbjct: 192 AKEISEGEMLEAMLLALEEIGNISDFIQTIIDDIGKEKIEVAQVEETELDRKISADFEEE 251

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           ++ S    +K  R   I ++++     +  E+   +E EI    ++I  K VR ++   K
Sbjct: 252 IKNSIRTTDKTEREDNIFNIEEAAKEKYLEEYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370
           +R DGRD   +R +SA+ GLL R HGS LF RG TQ + VVTLG+  D Q +D L+  + 
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           +  ++  YNF P   G+V  +  P RREIGHGRLA RA+ PVLP    FPYT+R+VSE+ 
Sbjct: 371 QKRYIHQYNFPPFCVGDVRPLRGPGRREIGHGRLAERALLPVLPDEKDFPYTIRVVSEVL 430

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GSSS A++CGS+L+LMDAGVPI+KPVAGIAMGL+K+ D   IL+DI G EDHLG MD
Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPITKPVAGIAMGLIKEDDSISILTDIQGLEDHLGDMD 490

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+QMDMKI GI+  ++  +L  A   R+ IL+ +   + + R  + ++ 
Sbjct: 491 FKVAGTRDGITALQMDMKIDGITREVLEESLNDAHSARMRILDVIESAIEKPRSDISDYA 550

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS      + A EMI
Sbjct: 551 PRLFTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASEDGESGKKAIEMI 610

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +SI   P+   IY G+VV++M+FGAFV     ++GL+HISQ+   RV K  DV+  GD V
Sbjct: 611 KSIVTDPKPGDIYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVEKVEDVLSVGDEV 670

Query: 671 WVKLLDFDDRGKIKLSMKVV 690
            VK+ + D +G+I LS K +
Sbjct: 671 KVKVTEIDRQGRINLSRKAL 690


>gi|29347973|ref|NP_811476.1| polynucleotide phosphorylase/polyadenylase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572562|ref|ZP_04849964.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
 gi|81444021|sp|Q8A4N6|PNP_BACTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29339875|gb|AAO77670.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837977|gb|EES66066.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
          Length = 708

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 292/705 (41%), Positives = 443/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  D+ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           D ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 185 DNIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + ++E      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFDAIREEFKAQFSEEELEEKAPLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D++    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VSEI ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+++++ ++E R  L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILDKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701


>gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
 gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
          Length = 712

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 299/696 (42%), Positives = 431/696 (61%), Gaps = 12/696 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG +A+Q+DG+V+   G+ ++LATVV  +   +G DF P++V+YQE+  + GK
Sbjct: 15  GREIIIETGALAKQADGSVVVKMGKAMLLATVVSKKEAGEGVDFLPMSVDYQEKFASTGK 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+L+RE R ++ EILISR++DR+IRP+F   Y  +TQ+ I ++  D E  P  ++ +
Sbjct: 75  IPGGFLKREGRLSDYEILISRIVDRAIRPIFPDDYHADTQIAITLVSGDDEVLPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I+G+  +NP   E ++ SL+  V+G+ D +LMVE E
Sbjct: 135 AASAALAVSDIPFNGPISEVRVAKIDGKLKINPTPTELEKASLEFIVAGSLDFILMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249
           A+++ E+ +L+A+ F H E K   +A  +L K+  KE        K    L ++M   + 
Sbjct: 195 ADEIQEEEMLEAMQFAHEEIKRHCQAQIELTKLVGKEVKREYTHEKSDPALFDKMKAEVY 254

Query: 250 EDL--RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + L   VS  I  K  R   I ++K + V     EH  +    I   F  I  +  R + 
Sbjct: 255 DKLYASVSKQIANKSERSALIKEIKDEFVESLGEEHE-YEASLIGPYFSKIHKEAARNLT 313

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           LD+K R+DGR    VR I + V  L   HGS++F RG+TQ++   TLGT+ DE  VD  +
Sbjct: 314 LDEKKRLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGTKMDEMMVDGAT 373

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
            +  N F +HYNF   +TGEV     P RRE+GHG LA RA+  VLP   + PYT+RIVS
Sbjct: 374 ISGYNKFYLHYNFPGFSTGEVKPNRGPGRREVGHGNLAMRALKKVLPPAEENPYTIRIVS 433

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDEDH 485
           +I ES+GSSSMATVC  SLA+MDAG+ I   V GIAMG++ D +   + ILSDI GDEDH
Sbjct: 434 DILESNGSSSMATVCAGSLAMMDAGIQIKSAVTGIAMGMISDANTGKYSILSDILGDEDH 493

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKV GT  GITA QMD+K+ G+  +++  AL QAK GRLHIL+E++K L+  + +
Sbjct: 494 LGDMDFKVTGTSQGITACQMDLKVEGLDYSVLKEALLQAKEGRLHILDEITKTLAAPKTE 553

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSSLAE 602
           L   TPR  +M IP + I  VIG GGKVI+ I + T   +    +D+ G + + S++   
Sbjct: 554 LKPHTPRSFMMMIPKELIGAVIGPGGKVIQEIQKDTSTTIVIEEVDNQGKISVFSANQDN 613

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++AA   I++I   PE+ + Y G+V  +  FGAFV F   +DGL+HIS++  ERV     
Sbjct: 614 MDAAISRIKAIVAQPEIGETYTGKVKNIQPFGAFVEFMPGKDGLLHISEIKWERVESMDG 673

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           V++ G+ + VKL+D D + GK KLS K +     KP
Sbjct: 674 VLEPGEEIMVKLIDIDKKTGKFKLSRKALLPKPEKP 709


>gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9303]
 gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 721

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 294/704 (41%), Positives = 422/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMMECGDTSVLVTATRSTG-REGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLLAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A   + K         EP   D+K  +
Sbjct: 183 GVVMVEAGANQLPEGDVIEAIDFGYEAVCELIKAQQSILKDAGIKQVQPEPPTQDTKLST 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGE 290
            LE+  S+ I E L+   F   K  R  ++D +K K      S        +  + N   
Sbjct: 243 YLEKNCSKSIGEVLK--QFEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANSKV 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++ +  R+DGR  + VR I++  G+L +R HGS LF RG TQ +
Sbjct: 301 LSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRTITSAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M +P RRE+GHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPPKDTFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             +  IL+DI G ED LG MDFKVAGT  GITA+QMDMKI G+    +  A+ QA+  R+
Sbjct: 481 DAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDAPRTSLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  EAA+ +I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFSGTITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 SQLSEARVEKVDDVVKVGDEVTVRIREIDNRGRINLTLRGVPQN 704


>gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9301]
 gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 721

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 433/709 (61%), Gaps = 32/709 (4%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L TG  A Q++G+V+   G+T +L T     + K+  DF PL  +Y+E+ Y
Sbjct: 8   ITFDGREIRLTTGLYAPQANGSVMIECGDTSLLVTAT-KTTKKEVSDFLPLICDYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG++RRE RP E   LISR+IDR +RPLF    ++E Q++ + +  D      +
Sbjct: 67  AAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G+++ ++M
Sbjct: 127 LAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSKEGIVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMS 245
           +E  ANQLSE   ++AI FG+       EA+S+L K  ++E ++ D   K     E E  
Sbjct: 187 IEAGANQLSEQDTIEAIDFGY-------EAVSELIK--SQEDLLKDLGIKQVKPSEPEED 237

Query: 246 QMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSEH-------------SSWN 287
           + +   L  +C  P     +K+   K+  DL+ + +   +                 S N
Sbjct: 238 KTLPSFLEKNCTKPIELVLKKFDLSKEERDLELEKIKVETQGKIESLKDDNQLKVLLSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346
           +  + S F+ +  K++R+ +++   R+DGRD + VR ISA  G+L +R HGS+LF RG T
Sbjct: 298 DKLLSSDFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL
Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  +I+  A+++A+ 
Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARLHILEKMQEAIEKPQETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFPGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNGG 706


>gi|298387792|ref|ZP_06997342.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
 gi|298259397|gb|EFI02271.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
          Length = 708

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 292/705 (41%), Positives = 443/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  D+ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           D ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 185 DNIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + ++E      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFDAIREEFKAQFSEEELEEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D++    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VSEI ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+++++ ++E R  L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILDKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701


>gi|326800482|ref|YP_004318301.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
 gi|326551246|gb|ADZ79631.1| Polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
          Length = 732

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 293/695 (42%), Positives = 441/695 (63%), Gaps = 25/695 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DG+V+   G T++LATVV  +  K G DF PL+V+YQE+  A G+
Sbjct: 30  GRQIEIETGKLAKQADGSVVVKMGNTMLLATVVSAQEAKPGTDFLPLSVDYQEKYAATGR 89

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+LRRE+R ++ EILISR++DR++RPLF   Y  +TQV+I ++  D +  P  ++ +
Sbjct: 90  IPGGFLRREARLSDYEILISRLVDRALRPLFPDDYHADTQVMITLISADKDIMPDALAGL 149

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I+G++V+NP L D ++ +L+  V+G+ + ++MVE E
Sbjct: 150 AASAALAVSDIPFNGPISEVRVAKIDGKFVINPLLSDLERATLEFIVAGSANDIVMVEGE 209

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           A ++SE+ +++AI F H   K  ++A  +LA+M  K    ++ + ++   E  +  +KE 
Sbjct: 210 AKEISEEEMVEAIAFAHEAIKVQVQAQLELAEMVGK----LEKRVYN--HEPSNPELKER 263

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIV---------SVFEDIQA 300
           +  + +     V    +   KK+  + F+  +E  +   GE V           F D+Q 
Sbjct: 264 VYAATYDSVYAVAKSGLS--KKERSAKFADIAEAFALTLGEDVDEETVFLAKKYFHDVQY 321

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++L++ +R+DGRD  TVR I ++V  L   HGS++F RG+TQ++  VTLG +EDE
Sbjct: 322 DAVRNLILNEGIRLDGRDVRTVRPIWSEVDYLPAAHGSAIFTRGETQSLTSVTLGAKEDE 381

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D       + F++HYNF   +TGEV     P RRE+GHG LA R++  VLP   + P
Sbjct: 382 QMIDGAFINGYSRFILHYNFPGFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPSQEENP 441

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSD 478
           YT+R+VS+I ES+GSSSMATVC  +LALMDAGV I+ PV+GIAMGL+ D     + +LSD
Sbjct: 442 YTIRVVSDILESNGSSSMATVCAGTLALMDAGVKITAPVSGIAMGLITDEKTGKYAVLSD 501

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKV GT  GI A QMD+KI G+   ++  AL QAK  RLHILNEM K 
Sbjct: 502 ILGDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVLKEALYQAKESRLHILNEMLKT 561

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKI 595
           +   R       PR+  + I  + I  +IG GGK+I+ +  +TG  ++I++    G V++
Sbjct: 562 IEAPREDFKPHAPRIVSLTIDKEFIGAIIGPGGKIIQEMQRETGTTISIEEIEGKGIVQV 621

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +   I+ A   I++I   PEV  +Y+G+V  +M FGAFV     +DGL+HIS++  +
Sbjct: 622 FADNKTSIDDAVRRIKAIAAKPEVGDVYEGKVKSIMPFGAFVEILPGKDGLLHISEIDWK 681

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R      + + G+ V VKLLD D +GK+KLS K +
Sbjct: 682 RYETMEGIFQVGEIVKVKLLDIDKQGKLKLSRKAL 716


>gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
 gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
          Length = 733

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/689 (41%), Positives = 433/689 (62%), Gaps = 12/689 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T E +  G+   LE G +A+Q+ GA +   G++ VL T V  +  KD  DFFPLTV++ E
Sbjct: 5   THEFDLYGKHYVLEAGELAKQATGACVVKCGDSTVLLTAVVSKERKD-YDFFPLTVDFIE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGGYL+RE+RP+E   LI+RMIDR +RP F + ++NE Q++   +  D  ++
Sbjct: 64  KMYAVGRIPGGYLKREARPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQINA 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
              +S++ ASAAL + G+P+EGP+   ++  +   G++++NP  +E D   LDL ++G+ 
Sbjct: 124 VDTISVMGASAALHIGGVPYEGPLACVRIGRNSETGEFLVNPTYEERDHSDLDLELAGSA 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             + M+E  A+++SE+ +L A+ FG        E   K  +        I+ +++  L+E
Sbjct: 184 TFISMLEAGAHEISEEDMLSAMAFGQEAIAAFCEEQKKFFEKWEAVNGPIEKREYI-LDE 242

Query: 243 EMSQMIK------EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            + ++ +      +++  +    +K  R  ++ DL + + + F+ E        I    +
Sbjct: 243 PIPEVHERIFAHYDEMSAALKDADKQSRMAKVADLMETIKAEFNEEEQEEWSRAIAVELK 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   +R ++++   R+DGR ++ +R I  +   L   HGS LF RG TQ + + TLG 
Sbjct: 303 SLEKHAMRVMVVETGERVDGRAADEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGM 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D++       ++ HYNF P  TGE  RMG+P RREIGHG LA RA+ PV+P  
Sbjct: 363 LNEWQRLDTIEPVDGKRYIHHYNFPPFCTGETGRMGSPKRREIGHGALAERALLPVIPSE 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVP+ +PV+G+AMGL+++    ++L
Sbjct: 423 DEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPLVRPVSGVAMGLIQENGKTVVL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL QA  GR+ ILN+M 
Sbjct: 483 TDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALMQAHEGRMFILNKML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +  E  P++  ++IP D+IR+VIG GGKVIRGI E TGA V+I +DG+V IA
Sbjct: 543 EAIPAPREETKETAPQILSLSIPTDKIRDVIGSGGKVIRGIQEDTGATVDIQEDGSVFIA 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            ++ A  EAA E I++I  VPEV + Y G+VV +  FGAFV     +DGL+HIS+++  R
Sbjct: 603 GTNGA-AEAAAERIKAIVKVPEVGEEYTGRVVGIQPFGAFVELLPGKDGLLHISRVAQGR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V K  DV+  GD V V++L+ D++GKI L
Sbjct: 662 VEKIEDVLSIGDEVKVRVLEVDEKGKISL 690


>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
 gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
 gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
          Length = 902

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/745 (39%), Positives = 449/745 (60%), Gaps = 61/745 (8%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           + +I    R + +ETG I RQ+  +V+ T GET+V ++V    +  D  DFFP++V+YQE
Sbjct: 91  STKIPVGDRHILVETGHIGRQASASVMVTDGETIVYSSVCLADTPNDPSDFFPMSVHYQE 150

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+L+ R+IDR +RP   K +  ETQ++  V  +D   S
Sbjct: 151 RLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHS 210

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P  +++ AA  A+ LS +P +  + G +V  IN Q+V+NP  ++ D   LDL ++GT  A
Sbjct: 211 PDSLAITAAGVAMALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTDSA 270

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242
           +LM+E   + L+E+ +L A+  G    + + +AI  L + C K+ +  D+ D    +L  
Sbjct: 271 ILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKM-FDAIDLPPPELYR 329

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSSW---------- 286
            +  +  ++L  +  I EK +R K +  L++K+++      Y + + SS           
Sbjct: 330 HVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADVIE 389

Query: 287 -------------NEGEI----VS---------------VFEDIQAKVVRTVMLDKKVRM 314
                        +EGE+    VS               VF+++ +K +R  +++   R 
Sbjct: 390 EEDEDEVIVDGEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGKRS 449

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN-D 373
           DGR    +R I++Q GLL R HGS+LF RG+TQA+ VVTLG  +  Q +D+L  T+ +  
Sbjct: 450 DGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKS 509

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y F P + GEV R+GAP+RREIGHG LA RA+ P+LP    FPYT+R+ S ITES+
Sbjct: 510 FYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESN 569

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED  G
Sbjct: 570 GSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASG 629

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG ++GI+A QMD+K+ GI+  IM  AL QA+ GR HILNEMSK        L 
Sbjct: 630 DMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKVLS 689

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAA 606
            + P + +M + P+++  +IG GGK I+ I+E+TG   ++  DDGTVKI +  L+ +E +
Sbjct: 690 PYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKS 749

Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           + +I ++T VP+V +IY+   +K +  +GAFV     R+GL HIS+LS+  +AK  D  K
Sbjct: 750 KAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAFK 809

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VKL++ +D+G+++LS + +
Sbjct: 810 VGDRIDVKLIEINDKGQLRLSSRAL 834


>gi|291562544|emb|CBL41360.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SS3/4]
          Length = 739

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/695 (41%), Positives = 428/695 (61%), Gaps = 19/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L +E GR+A+Q++GA    YG+TVVL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVEVGRVAKQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN  L SR+IDR +RPLF K Y+N+  +   VM  D E SP +
Sbjct: 67  SVGKIPGGFTKREGKASENATLTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPECSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP    QV  I+G++++NP   + + S L L V+ T++ V+M
Sbjct: 127 TAMLGSAIATCISDIPFDGPCAMTQVGLIDGEFIINPTSTQKKVSDLALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  A ++ E  +++AI   H   + +I+ I ++   C KE    +S     + +E+   
Sbjct: 187 IEAGAKEVPEQTMINAIFKAHEVNQEIIKFIDRIVAECGKEKHTYES---CAIPDELFAA 243

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IKE     ++  + F  EK  R + I  + +++   F +E+  W    G+ V  +   Q 
Sbjct: 244 IKEIVPPAEMEEAVFTDEKQKREENIRQITERLEEAF-AENEEWLPLIGQAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR  + +R ++A++ +L R HGS +F RG TQ +   TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRRIDEIRPLAAEIDILPRVHGSGMFTRGQTQILNACTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   +    +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QRLDGLDENETTKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI   VAGI+ GLV  +  DD+I+L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKTMVAGISCGLVTGETDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536
           DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++ +  RL+I+ N M+
Sbjct: 480 DIQGLEDFFGDMDFKVGGTHEGITAIQMDIKIHGLTRPIIEEAIRRCREARLYIMDNIMA 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+SE R  L ++ P++  + I P +I +V+G  GKVI  I+E+TG K++I DDG V + 
Sbjct: 540 PVISEPRKTLSKYAPKITQITIDPAKIGDVVGKQGKVINKIIEETGVKIDITDDGAVNVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    I+ A   IR+I    E   IY G+VV++M+FGAFV     +DG+VHIS+LS +R
Sbjct: 600 GTDQEMIDKAIATIRNIVTDVEPGMIYTGKVVRIMEFGAFVELAPNKDGMVHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           VAK  DVV  GD V V++++ D  G+I L+M+  D
Sbjct: 660 VAKVEDVVNIGDEVTVRVVEVDRMGRINLTMRPED 694


>gi|228472909|ref|ZP_04057666.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275491|gb|EEK14268.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 727

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/679 (40%), Positives = 426/679 (62%), Gaps = 14/679 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V+   G  ++LATVV ++   +G DF PLTV+Y+E+  A G+
Sbjct: 15  GRTISIETGKLAKQADGSVVVQMGNAMLLATVVANKEAGEGVDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  E QV+I +M HD    P  ++ +
Sbjct: 75  FPGGFFKREARPSDQEILTMRLVDRVLRPLFPKEYYCEVQVMIQLMSHDENVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASA L +S +PF+GP+   +V  ING++++NP   +  +  +D+ V  +++ V MVE E
Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRINGEFIINPSAQQLAESDMDIMVGASKEFVAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  + DAI F H   K  IEA  +L +   K    I + +  +  EE+++ I + 
Sbjct: 195 MDEVSEKDMADAIHFAHEAIKVQIEAQERLREKVGK---TIRTYEVPQENEEVAKKIYDF 251

Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
               C+        K+ R  + D +K+   + F+ E     +  +   F   Q + VR +
Sbjct: 252 CYDKCYAIAKENTTKHERSDKFDAVKEACKALFTEEELEEYDKLVSKYFSKAQKEAVRNL 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L++ +R+DGR+++ +R I  +VG L   HGS++F RG+TQ++  VTLGT  +   +D  
Sbjct: 312 ILNEDLRLDGRNTKQIRPIWCEVGYLPSPHGSAIFTRGETQSLTTVTLGTSREANVIDIP 371

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P+    PYT+R+V
Sbjct: 372 SEQGEERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKRMIPEDC--PYTVRVV 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEI ES+GSSSMATVC  +LALMDAG+ + KPV+GIAMGL+ DGD + +LSDI GDEDHL
Sbjct: 430 SEILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAVLSDILGDEDHL 489

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT  GITA QMD+KI G++  I+  AL+QA+ GR+HIL +++  ++     +
Sbjct: 490 GDMDFKVTGTKDGITACQMDIKIKGLTYEILEKALEQAREGRMHILGKITDTIAVPNPTV 549

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEI 603
               P++  + +P + I   IG GGK I+ +  +T   + +++    G V+I  +    I
Sbjct: 550 KPHAPKIVRLEMPKEYIGAFIGTGGKNIQDLQARTKTTIVVEEVGELGVVEILGTDADGI 609

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A + +  ++  P   ++YK +V ++++FGAFV F   +D L+H+S+++ ERV K SDV
Sbjct: 610 QEAVDAVYHVSFEPVEGEVYKVRVARLVEFGAFVEFVPGKDSLLHVSEIAWERVEKPSDV 669

Query: 664 VKEGDTVWVKLLDFDDRGK 682
           +KEGD + VK L  D + K
Sbjct: 670 LKEGDIIEVKYLGIDPKTK 688


>gi|239626266|ref|ZP_04669297.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520496|gb|EEQ60362.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 706

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/695 (40%), Positives = 425/695 (61%), Gaps = 19/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++ AGR L +E GR+A Q++GA    YG+TVVLAT       ++G DFFPL+V Y+E+ Y
Sbjct: 7   MDLAGRKLTVEIGRVAAQANGAAFMHYGDTVVLATATASSKPREGIDFFPLSVEYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  D + SP +
Sbjct: 67  SVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPDCSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF GP    QV  ++G++V+NP   + Q S + L V+ T++ V+M
Sbjct: 127 TAMLGSAIATSISDIPFAGPCATTQVGLVDGEFVINPTAAQKQVSDMALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ E  ++DAI   H   + +I  I  +   C KE     S +   + EE+   
Sbjct: 187 IEAGANEVPEQKMIDAIFKAHEVNQEIIRFIDTIVAECGKEK---HSYESCAVPEELFAA 243

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           I+E     ++  + F  +K  R K I ++  ++   F+  +  W    GE V  +   Q 
Sbjct: 244 IREIVPPVEMETAVFTDDKQTREKNIAEITARLEEAFAG-NEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR  + +R ++A++ LL R HGS +F RG TQ +   TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAIDEIRHLAAEIDLLPRVHGSGMFTRGQTQILNACTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QRIDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSAEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI + VAGI+ GLV     DD+++L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKEMVAGISCGLVTGDTDDDYLVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT +GITA+QMD+KI G++  I+  A+ + +  R+HIL++ M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTKNGITAIQMDIKIHGLTRPIIEEAITRTREARMHILDDVMK 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+SE R  L  + P+++ + I P +I +V+G  GKVI  I+E+TG K++I DDG+V + 
Sbjct: 540 PVISEPRKHLSPYAPKIKQITIDPQKIGDVVGKQGKVINKIIEETGVKIDITDDGSVNVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +  A I+ A  +I  I    E   +++G+VV++M+FGAFV     +DG+VHIS+LS +R
Sbjct: 600 GTDEAMIDRAITIITGIVTDIEAGMVFEGKVVRIMNFGAFVELAPNKDGMVHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V K  DVV  GD V VK+ + D  G+I L+M+  D
Sbjct: 660 VGKVEDVVNIGDEVTVKVTEVDKMGRINLTMRPSD 694


>gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured
           Prochlorococcus marinus clone ASNC1363]
          Length = 721

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 291/703 (41%), Positives = 431/703 (61%), Gaps = 20/703 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQERT 67
           I + GR ++L TG  A Q+ G+V+   G+T +L T    ++LK +  DF PL  +Y+E+ 
Sbjct: 8   ITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTAT--KTLKKETSDFLPLICDYEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG++RRE RP E   LI+R+IDR +RPLF    ++E Q++ + +  D      
Sbjct: 66  YAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLDERVPAD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V+++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G+ D ++
Sbjct: 126 VLAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIV 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKD----FSKLE 241
           M+E  ANQLSE   ++AI FG+     +I++   L K +  K+    D ++     S LE
Sbjct: 186 MIEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLKDLGIKQNKPTDPEEDKTLPSYLE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGEIVS 293
           +   + I  DL +  F   K  R  +++ +K +      S          +S NE  I S
Sbjct: 246 KNCGKAI--DLVLKKFDQSKEERDLELEKIKTEAQGKIDSLKDDNQVKVLTSENEKLIHS 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
            F+ +  K++R+ +++   R+DGRD + VR I+A   +L +R HGS+LF RG TQ +   
Sbjct: 304 DFKKLTKKLMRSQIINDGKRVDGRDLDEVRKITASASILPKRVHGSALFQRGLTQVLSTT 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA RAI PV
Sbjct: 364 TLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPV 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL+K+G +
Sbjct: 424 LPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKE 483

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  +I+  A+++A+  RLHIL
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARPARLHIL 543

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G 
Sbjct: 544 EKMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGI 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+VHISQL
Sbjct: 604 VTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQL 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 664 SEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706


>gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           7803]
 gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7803]
          Length = 721

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 297/704 (42%), Positives = 423/704 (60%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+S+  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT +
Sbjct: 123 PADVLSVTGASMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFS 238
            ++MVE  ANQL E  V++AI FG+     +I+A   + K    E +       DS    
Sbjct: 183 GIVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQESILKDAGIEQVKPEQPEEDSTLPV 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGE 290
            LE+  ++ I E L  S F   K  R  ++D ++        +        +  S N   
Sbjct: 243 YLEKACTKAIGEVL--SQFDQSKADRDSKLDAIRSSTAETIEALKDSDPVRKLVSANSKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++    R+DGR  + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LPTSFKALTKKLMRQQIVKDGKRVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETKPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G++   +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLAMGTIAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMMEAIDTPRDGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  + A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGAITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704


>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
 gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
          Length = 714

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 288/689 (41%), Positives = 436/689 (63%), Gaps = 19/689 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQERT 67
           ++  GR L +ETG+ A+   G+V  TYGETVV+AT    D  ++   DF PLTV ++ER 
Sbjct: 15  VDVGGRTLTIETGKYAKHVSGSVWVTYGETVVMATAQASDAPIQ--ADFLPLTVEFEERH 72

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVG+IPG ++RRE RP E  IL +R+ DR IRPLF K +++E QV++ V+  D E++P 
Sbjct: 73  YAVGRIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVLLTVLSADQENTPD 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLM 187
           ++  +AASAALMLS +P+EGP+   +V   NG+ VLNP   ED   LDL V+G+++A++M
Sbjct: 133 ILGPIAASAALMLSDIPWEGPIASVRVGLQNGRLVLNPVAQEDS-QLDLVVAGSKEAIIM 191

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKLE 241
           VE  A ++SED +++A+ F H   +P++E   ++       K   + P  +D+   + L 
Sbjct: 192 VEAGAQEVSEDRLVEALEFAHRAMQPILELQEQMRAELGKPKFAYEPPAKLDADTQATL- 250

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGE---IVSVFE 296
               + +++ L        K  R   ++  ++ ++      +E  S ++     +   F+
Sbjct: 251 --YQRAVEKGLSSVLQTASKGERSAALEAFRQTLLEELVPPAEDGSVDQERRKLVAEGFD 308

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + +R ++L +  R DGR    VR I  +  +L +THGS++F RG+TQ + VVTLGT
Sbjct: 309 EVVKQELRRLILQENKRADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTLGT 368

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L     + F++HYNF P +TGEV R+   SRRE+GHG LA+R +  VLP  
Sbjct: 369 GRDAQLVDDLGIETEDPFLVHYNFPPYSTGEVRRLRGVSRREVGHGNLAKRGLRAVLPSR 428

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+V ++ ES+GSSSMATVC   LAL+DAGVP+ K VAG+AMGLVK+G+  ++L
Sbjct: 429 EEFPYTIRVVGDVLESNGSSSMATVCAGCLALLDAGVPLKKHVAGVAMGLVKEGEQAVVL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+KI G++  IM  AL QA+  RLHIL+ M 
Sbjct: 489 TDILGLEDALGDMDFKVTGTRDGVTALQMDIKIKGLTPEIMRAALYQAREARLHILSLME 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R ++    PR+  + + PD+I  +IG GGK IR + E+ G +++I+ DGT+++ 
Sbjct: 549 RAVPTHRAEMKPHVPRILTLKVNPDKIGGIIGPGGKNIRQL-EELGVEIDIEQDGTIRLY 607

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S A  E A+  I   T   +V +IY+G V ++ +FGAF+     +DGL+HISQL+  R
Sbjct: 608 SASAAAAEEAKARILGQTAEAKVGEIYEGTVTRITNFGAFIEILPGKDGLLHISQLAQGR 667

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V K  DV+  G  + VK+   D++G++ L
Sbjct: 668 VQKVEDVLSLGQKIKVKVNSIDEQGRVDL 696


>gi|160940474|ref|ZP_02087819.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437054|gb|EDP14821.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
           BAA-613]
          Length = 707

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/695 (40%), Positives = 423/695 (60%), Gaps = 19/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++ AGR L +E GR+A Q+ GA    YG+TVVL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 7   MDLAGRKLTVEVGRVAAQASGAAFMHYGDTVVLSTATASSKPREGIDFFPLSVEYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  D   SP +
Sbjct: 67  SVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMCVDPNCSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF GP    QV  I+G++++NP  D+ Q S + L V+ T++ V+M
Sbjct: 127 TAMLGSAIATSISDIPFAGPCATTQVGLIDGEFIINPTADQKQVSDMALTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ E +++DAI   H   + +I+ I  +   C KE    +S     + EE+   
Sbjct: 187 IEAGANEVPEQIMIDAIFRAHEVNQEIIKFIDTIVAECGKEKHTYES---CAVPEELFAA 243

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           I+E     ++  + F  +K  R K I ++  K+   F+  +  W    GE V  +   Q 
Sbjct: 244 IREIVTPQEMEEAVFTDDKQTREKNIAEITAKLEEAFAG-NEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V LL R HGS +F RG TQ +   TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAITEIRHLAAEVDLLPRVHGSGMFTRGQTQILNACTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QKLDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSAEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVP+ + VAGI+ GLV     DD+++L+
Sbjct: 420 PYAIRTVSETMESNGSTSQASICASTLSLMAAGVPLKEMVAGISCGLVTGDTDDDYLVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536
           DI G ED  G MDFKV GT +GITA+QMD+KI G++  I+  A+ + +  R++IL N M 
Sbjct: 480 DIQGLEDFFGDMDFKVGGTKNGITAIQMDIKIHGLTRPIIEEAIARTREARMYILDNVMR 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+SE R  L  + P+++ + I P +I +V+G  GKVI  I+E+TG K++I DDG V + 
Sbjct: 540 PVISEPRKHLSPYAPKIKQITIDPQKIGDVVGKQGKVINKIIEETGVKIDITDDGAVNVC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +  A I+ A ++I  I    E   I+ G+VV++M+FGAFV     +DG++HIS+LS +R
Sbjct: 600 GTDEAMIDKAIQIITGIVTDIEAGMIFNGKVVRIMNFGAFVELAPNKDGMIHISKLSDKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V K  DVV  GD V VK+ + D  G+I L+M+  D
Sbjct: 660 VGKVEDVVNIGDEVTVKVTEVDKMGRINLTMRPSD 694


>gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea
           DSM 7271]
 gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           DSM 7271]
          Length = 735

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/684 (40%), Positives = 429/684 (62%), Gaps = 23/684 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+   G  ++LATVV  + +    DF PLTV+Y+E+  A G+
Sbjct: 15  GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++ HD    P  ++ +
Sbjct: 75  FPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASA L +S +PF+GP+   +V  +NGQ+++NP  ++ + S +D+ V  ++D V MVE E
Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIV----IDSKDFSKLE 241
            +++SE  + +AI F H   KP IEA  +LA+   K      EP V    + +K +    
Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEVENEEVKAKVYPLAY 254

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E+   + KE+         K  R ++ + +K++ ++ F+ E        I   F++ + +
Sbjct: 255 EKCYAIAKENTT-------KQERGEKFNAVKEECLALFTEEELEELTPIITRYFDEAEKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTLGT  +  
Sbjct: 308 AVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREAN 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P+    PY
Sbjct: 368 VIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DG+ + +LSDI G
Sbjct: 426 TVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSDILG 485

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +++  +++
Sbjct: 486 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIAK 545

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASS 598
               +    P++  M +P + I   IG GGK I+ +  +T   + +++ G    ++I  +
Sbjct: 546 PNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGIIEILGT 605

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS++S +RV 
Sbjct: 606 DEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRVD 665

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGK 682
           K  D +KEGD + VK L  D + K
Sbjct: 666 KIEDALKEGDIIEVKYLGIDPKTK 689


>gi|295132795|ref|YP_003583471.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
           SM-A87]
 gi|294980810|gb|ADF51275.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
           SM-A87]
          Length = 731

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 294/699 (42%), Positives = 441/699 (63%), Gaps = 19/699 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV   +     DFFPLT++Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVRMGDAMLLCTVVSSYT-PTTMDFFPLTLDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGGY +RE+RP+  EIL+ R++DR +RPLF K YK ETQV+I +M HD E  P  ++ +
Sbjct: 74  FPGGYFKREARPSSEEILVMRLVDRVLRPLFPKDYKFETQVMIQLMSHDPEVMPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ +S +PFE P+   +V  I+G+ V+NP  ++ ++  LD+ V  + D+V+MVE E
Sbjct: 134 AASAAIQVSDIPFETPISEVRVARIDGELVINPSFEQLEKADLDMMVGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE+ + +AI F H   K   EA ++L K   K    I   + ++ +E++ Q I + 
Sbjct: 194 MDEISEEEMAEAIKFAHEAIKVQCEAQTRLRKAAGK--TEIREYEVTEEDEDLKQKIYDA 251

Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           +    +        K+ R + I +LK+++++ FS E     +  I S F D   K VR V
Sbjct: 252 VYQKAYDVAKQGSTKHERSEAISNLKEEVLAMFSEEELEEKQKLISSYFSDAHKKAVRDV 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L + +R+DGR +  +R I  +V  L   HGSS+F RG+TQA+  VTLGT  +   VD  
Sbjct: 312 VLKEGIRLDGRKTTEIRPIWCEVDYLPSPHGSSIFTRGETQALATVTLGTSREANQVDLP 371

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +     +F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P  +  PYT+R+V
Sbjct: 372 TQQGEENFYLHYNFPPFSTGEAYPIRGTSRREIGHGNLAQRALKGMIP--SDCPYTVRVV 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+ ES+GSSSMATVC  ++ALMDAG+ + KPV+GIAMGL+ DG+DF +LSDI GDEDHL
Sbjct: 430 SEVLESNGSSSMATVCAGTMALMDAGIQLKKPVSGIAMGLISDGEDFAVLSDILGDEDHL 489

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  ++E    +
Sbjct: 490 GDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILEKLTDTIAEPNANV 549

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601
              +P++    IP D I  +IG GGKVI+ + ++T  ++ I++D     G V+I  +S  
Sbjct: 550 KAHSPKIITRRIPGDYIGALIGPGGKVIQELQKETKTEIVINEDPVTEEGIVEILGTSQE 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659
            I+     I SIT  PE   +Y+ +V+K++DFGA V +  A   + L+HIS+L+ ER   
Sbjct: 610 GIDKVLAKIDSITFKPEKGSVYEVKVIKLLDFGAVVEYIEAPGNEVLLHISELAWERTNN 669

Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKP 697
            +DVV  GD + VK    D +  K K+S K +     +P
Sbjct: 670 VTDVVNLGDVIDVKYFGVDPKTRKEKVSRKALLPRPERP 708


>gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
           marinus SJ]
          Length = 709

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/702 (40%), Positives = 426/702 (60%), Gaps = 19/702 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D     + + G+ + +ETGR+A+Q+DG+VL +   T VL TV     +KDGQDFFPL V 
Sbjct: 4   DKKVYSLNYGGKEVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEVKDGQDFFPLLVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y E+ Y+ GK  GG+L+RE RP+ +E L +R+IDR +RPLF + Y  +T V  NV+ +  
Sbjct: 64  YTEKFYSAGKFVGGFLKREGRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLSYSD 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E    V++ + ASAAL +S +PF GP+   +V  ++G+ VLNP   +  +  L++ V+ +
Sbjct: 124 EGDAEVLAGLGASAALTISDIPFNGPIGTCKVGRVDGKLVLNPSHSQWAESDLEIAVAAS 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SK 239
            DA+LMVE EA  + E  VL+AI FGH+  K  ++ + ++     +  I    ++F  + 
Sbjct: 184 ADAILMVEGEAKVVPEKEVLEAIYFGHDNIKEYVKLMEQM-----RSEIGRPKREFVSAA 238

Query: 240 LEEEMSQMIKEDL----RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-------E 288
             E M   ++ D     R    I +K  R + +  L+K++ +  S    ++         
Sbjct: 239 ANETMMSKMRSDFASGARNCISIDDKMDRQRAVKALEKEVKNAMSEAPEAFGLTADDSFG 298

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E     +++  +++R  +L+++ R+ GR    VR+I  +  LL+  HGSSLF RG+TQ 
Sbjct: 299 KEAYKGVDELLYEMMRGDILNEEKRIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQV 358

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VT+G +  E+  DS+ GT+   F +HYNF P + GE   +    RRE+GHG LA RA
Sbjct: 359 MAAVTIGGKHGEKMEDSIRGTEFQKFYLHYNFPPFSVGEARGVRGVGRRELGHGNLAERA 418

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  V+P   +F YT R+V E+ ES+GSSSM +VC +S+ALMDAGVPIS PVAGIAMGL+ 
Sbjct: 419 VKAVMPSEEEFAYTTRVVCEVMESNGSSSMGSVCSASMALMDAGVPISNPVAGIAMGLIT 478

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           DG+ F +L+DI GDEDHLG MDFKVAGT  GITA+QMD+KI G++  I+  +++QA+ GR
Sbjct: 479 DGERFKVLTDILGDEDHLGDMDFKVAGTVDGITAIQMDIKITGLTREIVEKSIEQAREGR 538

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           LHIL EM+K +S  R +  +  PR+  + IP D+I  +IG GGK I+ + E     V I 
Sbjct: 539 LHILGEMAKTISTKRAEFKDGVPRIVTVQIPVDKIGALIGPGGKNIKKLQEDFDVTVEIT 598

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++G VK+  +    +      I    + PEV  IY+  VV + ++GAFV       GLVH
Sbjct: 599 EEGLVKVLGTDTDILNNCVASIDLQINGPEVGSIYEAVVVTIKEYGAFVDIIPGVSGLVH 658

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +S+LS ERV   S+ + EGD V VK+++ D  G++KLS K V
Sbjct: 659 VSELSDERVKDVSEYLSEGDKVSVKVVEVDRMGRLKLSAKAV 700


>gi|153806044|ref|ZP_01958712.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
 gi|149130721|gb|EDM21927.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
          Length = 708

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       D  
Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YDHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + + ++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAICEEFKAQFSEEELEEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D++    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VSEI ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILDKIAETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 EGVGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLIDIDPKTGKFKLSRKVL 701


>gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
 gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
          Length = 712

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/680 (41%), Positives = 429/680 (63%), Gaps = 3/680 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+  ++  G+ A Q++G      G+T +L T V     ++G DFFPL  ++QE+ YAVGK
Sbjct: 12  GKDFEITIGKFAEQTNGECYIRCGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGK 71

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+L+RE + ++   LISR +DR +RPLF + Y N+ Q+I  V+  D ++ P  ++ +
Sbjct: 72  IPGGFLKREGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDPLTTI 131

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS AL +S +PF GPV    V  ++G+ ++NP  +E ++ +L+L V+G + A+ MVE  
Sbjct: 132 GASIALGISDIPFYGPVGACMVGKVDGKLIINPSKEEREKSTLELTVAGKKGAINMVEAG 191

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
           A +LSE+ +L+A++    E   + + I  +     KE I +   + ++L+ ++S+  +ED
Sbjct: 192 ACELSEEEMLEAMLLALEEIGNISDFIQTIIDDIGKEKIEVAQIEETELDRKISEDFEED 251

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
           ++ S    +K  R   I  ++++    +   +   +E EI    ++I  K VR ++   K
Sbjct: 252 IKNSIRTTDKTEREANIFRIEEEAKEKYLEAYPE-SEDEIHRRIDNIMKKEVRRMISIDK 310

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370
           +R DGRD   +R +SA+ GLL R HGS LF RG TQ + VVTLG+  D Q +D L+  + 
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           +  ++  YNF P   G++  +  P RREIGHGRLA RA+ PVLP    FPYT+R+VSE+ 
Sbjct: 371 QKRYIHQYNFPPFCVGDIRPLRGPGRREIGHGRLAERALIPVLPDEKDFPYTIRVVSEVL 430

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+     IL+DI G EDHLG MD
Sbjct: 431 SSNGSSSQASICGSTLSLMDAGVPIRKPVAGIAMGLIKEDSSISILTDIQGLEDHLGDMD 490

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+QMDMKI GI+  ++  +L  A   R+ IL+ +   + + R  + E+ 
Sbjct: 491 FKVAGTRDGITALQMDMKIDGITREVLEESLNDAHSARMRILDVIEAAIDKPRDDISEYA 550

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS+     + A EMI
Sbjct: 551 PRLFTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASNDGESGKKAIEMI 610

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++I   P+   +Y G+VV++M+FGAFV     ++GL+HISQ+   RV K  D +K GD V
Sbjct: 611 KAIVTDPKAGDVYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVEKVEDELKVGDEV 670

Query: 671 WVKLLDFDDRGKIKLSMKVV 690
            VK+ + D +G+I LS K +
Sbjct: 671 KVKVTEIDRQGRINLSRKAL 690


>gi|113475234|ref|YP_721295.1| polynucleotide phosphorylase/polyadenylase [Trichodesmium
           erythraeum IMS101]
 gi|122965040|sp|Q115K2|PNP_TRIEI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110166282|gb|ABG50822.1| Polyribonucleotide nucleotidyltransferase [Trichodesmium erythraeum
           IMS101]
          Length = 717

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/694 (41%), Positives = 433/694 (62%), Gaps = 19/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G  A Q+ GAV+   G+T VL T    +  ++G DF PL V+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLFAPQAGGAVMIESGDTAVLVTATTAKG-REGIDFLPLLVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP E   L SR+IDR +RPLF    +++ Q++   +  D E  P V
Sbjct: 67  AGGKIPGGFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  +S A++L+ LPF GP+   +V  +   +++NP   E   G LDL V+G+   V+M
Sbjct: 127 LAVTGSSVAVLLAKLPFYGPMAAVRVGLVGDDFIINPTYREVKNGDLDLVVAGSPQGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+     +I+A    I+++  ++   EP  +D    + ++E
Sbjct: 187 VEAGANQLPEQDIIEAIDFGYEAVCDLIQAQREIIAEMGIELVELEPPEVDPTLENYIKE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS--SWNEGE---IVSV 294
           + ++ IKE L  S +  +K  R +++D++K  +   ++    E +  +  E E   + + 
Sbjct: 247 KATEQIKEIL--SQYDLDKNQRDEKLDEIKDSLAESITELPEEEAVRAMVESESMLLGNA 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R  ++ + +R+DGR  + VR +S +VG+L  R HGSSLF RG TQ +  VT
Sbjct: 305 FKSVTKKLMRQQIVAEGIRVDGRKLDEVRPVSCRVGVLPSRVHGSSLFNRGLTQVMSAVT 364

Query: 354 LGTREDEQ-YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           LGT  D Q   D L       ++ HYNF P + GE   +  P RREIGHG LA RA+ PV
Sbjct: 365 LGTPGDAQELADDLHPQDEKRYLHHYNFPPFSVGETKPLRQPGRREIGHGALAERALIPV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P++  FPY +R+VSE+  S+GS+SM +VC S+L LMDAGVPI KPV+G AMGL+K+ ++
Sbjct: 425 IPKSDIFPYVIRVVSEVLSSNGSTSMGSVCASTLGLMDAGVPIVKPVSGAAMGLIKEDEE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+   ++  A+ QAK  R+HIL
Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPIEVIADAIHQAKPARIHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M  VL   R  +  + PR+    I P+ I  VIG GGK I+GI E+TG K++IDDDGT
Sbjct: 545 DKMLSVLDLPRPDMSPYAPRLLSFKIDPEMIGLVIGPGGKTIKGITEETGVKIDIDDDGT 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IA++   + + A  +I+ +T       +Y G+V +++  GAFV     ++G+VHISQ+
Sbjct: 605 VTIAAADGEKAKQACNIIQGMTKKLNPGDVYVGRVTRIIPIGAFVEVFAGKEGMVHISQI 664

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV K  D +  GD V VK+ + D +G++ L+
Sbjct: 665 ADYRVGKVEDELAIGDEVIVKVREIDSKGRVNLT 698


>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
           TCF52B]
 gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
           TCF52B]
          Length = 697

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/697 (40%), Positives = 444/697 (63%), Gaps = 29/697 (4%)

Query: 10  EWA----GRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQ 64
           EW     GR + ++ G++A+QS G+V   +G++VVLAT  + DR++ +G DF PLTV YQ
Sbjct: 5   EWTKELFGRKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTI-EGVDFVPLTVEYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K  +N+ Q+I+ V+  D  +
Sbjct: 64  EKFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNT 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V  ++AAS AL +S +PFEG V G ++ Y++G++V+ P  ++ ++  LD+ V+G++D
Sbjct: 124 PPDVTGIIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDF 237
           A+ MVE EA +++E+ +++A++  H+  K +IE   ++       KM  +EP   ++   
Sbjct: 184 AITMVEGEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKMEIEEPKPNETL-I 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY------FSSEHSSWNEGEI 291
            K EE +S+   E+LR    I EK  R  ++ + + +++           +     E  +
Sbjct: 243 GKFEEMISE---EELRDKLLIKEKLERSAKLKEYRDQILEKIFEDVEMEDDEKILQESLL 299

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
              F++   K++R +++++ +R DGR  + +R I+ +VG+L RTHGS+LF RG+TQ++ +
Sbjct: 300 KEYFDERTKKLMRKIIIEEGIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGI 359

Query: 352 VTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VTLG   +EQ VD++   GT+R  F++HYNF P + GEV  +  P RREIGHG LA RA+
Sbjct: 360 VTLGAPMEEQIVDTIMEEGTKR--FILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERAL 417

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPY +R+VSEI ES+GSSSMATVC  SLALMDAGVPI   VAG+AMGL+ +
Sbjct: 418 KAVVPSEEEFPYVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIE 477

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
               ++L+DI G EDH G MDFKVAGT +GITA QMD K+ G+ E ++  ALQQAK  R+
Sbjct: 478 DGQEVVLTDIQGLEDHWGDMDFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARM 537

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL+ M   + + R  L  + P +  + I P ++  +IG GGKVI+ I+++   +++IDD
Sbjct: 538 KILDIMFNTIEKPRESLSPYAPLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDD 597

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V I      ++  A E I++IT   EV  +++G++ ++  +G FV     + GL H
Sbjct: 598 TTGKVSIYGKDQKKVNEAIEYIKTITKDIEVGDVFEGKITRIEPYGIFVELMPGKIGLAH 657

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            S+L  E      +  K GDT+ V +++ D+ G+I+L
Sbjct: 658 SSKLG-EDSKNFKEKYKIGDTIKVIVVNIDENGRIQL 693


>gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu
           str. Miyayama]
 gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu
           str. Miyayama]
          Length = 757

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 304/715 (42%), Positives = 438/715 (61%), Gaps = 40/715 (5%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR---SLKDGQDF- 56
           MF++    +EW G+ L ++TG +ARQ+ GA   +YG TVVLA V   +   + K   D  
Sbjct: 1   MFEIKESSMEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLS 60

Query: 57  -FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
              L  N+  ++YA+G+IP G+ +RE + +E E+L SR++DR++RPL  +   NE  ++ 
Sbjct: 61  GLALVTNFLAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVC 120

Query: 116 NVMQH-DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL 174
            ++ H + +  P + +++AASAAL LSG+PF GPV+G  VD + G  V    + E +G L
Sbjct: 121 KLLAHGNRKVLPEIPALIAASAALQLSGIPFSGPVIGVDVD-MRGSEVTCNEIRETEGGL 179

Query: 175 DLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPI--V 231
           +LFV+ T+++V+MVE EA++ SE+ V++A+       KPV   I++  K +   +PI  +
Sbjct: 180 ELFVACTEESVVMVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVKPIGVL 239

Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSS 281
            D+K+             E +R +C           I  K  R  ++  +     +  S 
Sbjct: 240 YDNKELC-----------EKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSD 288

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           +   + E E++   + ++ ++VR  +L++ +R DGR    +R IS  +  L  THGS+LF
Sbjct: 289 D--GYAESEVLFFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALF 346

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG TQ++VV TLG+ +DEQ +D + G +R   ++HYNFLP A GEV  + AP RREIGH
Sbjct: 347 TRGGTQSLVVATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGH 406

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           GRLA +A+  VLP    FPYTLR+VSEITESDGSSSMATVCGSSLALMD GVPI+K VAG
Sbjct: 407 GRLALKAVKAVLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAG 466

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           IAMGL+ DG    +LSDISGDED LG MDFKVAGT +GI A+QMDMK+ GIS   +  AL
Sbjct: 467 IAMGLITDGVRSAVLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDAL 526

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QA  GRLHIL +M  V+++ R  L +  P++    I  D +  VIG GGK IRGI   T
Sbjct: 527 NQALAGRLHILEKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDT 586

Query: 582 GAKVNIDDDGTVKIAS---SSLAEIEAAREMIRSITD--VPE--VNKIYKGQVVKVMDFG 634
            AK++ID +  V I +    +L E +   +M    +D  VP+  + ++Y G++V V+DFG
Sbjct: 587 SAKIDIDQNNYVYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDFG 646

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            FV     ++GLVHIS++S  RV        EG  V V++ D    GKIKL+M++
Sbjct: 647 LFVVLPNKQEGLVHISEISKNRVNDIRADYTEGQAVTVRIKDIGSDGKIKLTMRI 701


>gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. AS9601]
 gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. AS9601]
          Length = 721

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 288/709 (40%), Positives = 430/709 (60%), Gaps = 32/709 (4%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L TG  A Q+ G+V+   G+T +L T     + K+  DF PL  +Y+E+ +
Sbjct: 8   ITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTAT-KTAKKEPSDFLPLICDYEEKLF 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG++RRE RP E   LI+R+IDR +RPLF     +E Q++ + +  D      V
Sbjct: 67  AAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLDERVPADV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A ++  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G+ D ++M
Sbjct: 127 LAVTGASIATLVGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMS 245
           +E  ANQLSE   ++AI FG+       EA+++L K  ++E ++ D   K     E E  
Sbjct: 187 IEAGANQLSEQDTIEAIDFGY-------EAVTELIK--SQEDLLQDLGIKQIKPSEPEED 237

Query: 246 QMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSEH-------------SSWN 287
           + +   L  +C  P     +K+   K+  DL+ + +   +                +S N
Sbjct: 238 KTLPSYLEKNCTKPIELVLKKFDLSKEERDLELEKIKTETQSKIDSLKDDNQVKVLTSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346
           E  + S F+ +  K++R+ +++   R+DGRD + VR ISA  G+L +R HGS+LF RG T
Sbjct: 298 EKLLHSDFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL
Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  +I+  A+++A+ 
Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R+HIL +M   + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARIHILEKMQGAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706


>gi|237722890|ref|ZP_04553371.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
 gi|229447412|gb|EEO53203.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
          Length = 708

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 290/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREVCYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           ILN++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701


>gi|237713950|ref|ZP_04544431.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
 gi|262409141|ref|ZP_06085685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
 gi|294647465|ref|ZP_06725048.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
           2a]
 gi|294808931|ref|ZP_06767656.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229446106|gb|EEO51897.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
 gi|262352888|gb|EEZ01984.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
 gi|292637175|gb|EFF55610.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
           2a]
 gi|294443866|gb|EFG12608.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 708

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 290/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEVIREEFKAQFSEEELDEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           ILN++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701


>gi|293373410|ref|ZP_06619765.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
           CMC 3f]
 gi|298482234|ref|ZP_07000421.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
 gi|292631548|gb|EFF50171.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
           CMC 3f]
 gi|295085266|emb|CBK66789.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens XB1A]
 gi|298271521|gb|EFI13095.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
          Length = 708

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 290/705 (41%), Positives = 442/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           ILN++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 701


>gi|331082947|ref|ZP_08332067.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330399942|gb|EGG79600.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 697

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/696 (40%), Positives = 427/696 (61%), Gaps = 19/696 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  +   VM  D E +P V
Sbjct: 67  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPEV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           V+M+ +S A  +S +PF+GP    Q+  +NG+ V+NP L + + S L L V+ T++ V+M
Sbjct: 127 VAMLGSSIATCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISDLQLTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ E  +++AI   H   + +I  I K+   C KE     S +   + EE+   
Sbjct: 187 IEAGANEIPEAKMIEAIFKAHEVNQEIIAFIDKIVAECGKEK---HSYESCAVPEELFAA 243

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E++  + F  EK VR + I  + +K+   F +E+  W    GE V  +   Q 
Sbjct: 244 IKEIVTPEEMEEAVFTDEKQVREENIRVITEKLEEAF-AENEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+  ++ R HGS++F RG TQ   + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSEA 359

Query: 361 QYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   +    +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 QRLDGLDEFEVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV  +  DD+++L+
Sbjct: 420 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGETDDDYLVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K  R +IL E M 
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVME 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R  + ++ P++  + I P++I +V+G  GK I  I+++TG K++IDD+G V I 
Sbjct: 540 KCIPAPRKTVSKYAPKIVQIQIDPEKIGDVVGQRGKTINAIIDETGVKIDIDDNGGVSIC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    ++ A E I++IT   +  +I+ G+V+ + +FGAF+ F   ++G+VHIS++S ER
Sbjct: 600 GTDQHMMDKAVEYIKTITTDYQEGQIFTGKVISIKEFGAFLEFAPGKEGMVHISKISKER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+  GD V V  L  D  G+I  SMK V +
Sbjct: 660 IEKVEDVLSIGDVVKVVCLGKDKMGRISFSMKDVPE 695


>gi|255693073|ref|ZP_05416748.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
           DSM 17565]
 gi|260621113|gb|EEX43984.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
           DSM 17565]
          Length = 708

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 292/709 (41%), Positives = 440/709 (62%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELA-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E  ++SE  +L+A+   H      CK  +E    + K   +E          
Sbjct: 185 ENIMMVEGEMQEVSEAELLEAMKVAHEAIKIHCKAQMELTEAVGKTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +R +C+             K+ R    + ++++  + FS E      
Sbjct: 235 YCHEVNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFEAIREEFKAQFSEEELEEKG 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ+
Sbjct: 295 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LTSVTLGTKMDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 415 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NPGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR+HILN++++ ++E R +L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GRMHILNKITETIAEPRAELKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVIT 592

Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
              ID  G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 593 IEEIDGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLIDIDPKTGKFKLSRKVL 701


>gi|315223620|ref|ZP_07865474.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946401|gb|EFS98396.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 735

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/684 (40%), Positives = 429/684 (62%), Gaps = 23/684 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+   G  ++LATVV  + +    DF PLTV+Y+E+  A G+
Sbjct: 15  GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++ HD    P  ++ +
Sbjct: 75  FPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASA L +S +PF+GP+   +V  +NG++++NP  ++ + S +D+ V  ++D V MVE E
Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIV----IDSKDFSKLE 241
            +++SE  + +AI F H   KP IEA  +LA+   K      EP V    + +K +    
Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEVENEEVKAKVYPLAY 254

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E+   + KE+         K  R ++ + +K++ ++ F+ E        I   F++ + +
Sbjct: 255 EKCYAIAKENTT-------KQERGEKFNAVKEECLALFTEEELEELTPIITRYFDEAEKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTLGT  +  
Sbjct: 308 AVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREAN 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P+    PY
Sbjct: 368 VIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DG+ + +LSDI G
Sbjct: 426 TVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSDILG 485

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +++  +++
Sbjct: 486 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIAK 545

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASS 598
               +    P++  M +P + I   IG GGK I+ +  +T   + +++ G    ++I  +
Sbjct: 546 PNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGIIEILGT 605

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS++S +RV 
Sbjct: 606 DEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRVD 665

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGK 682
           K  D +KEGD + VK L  D + K
Sbjct: 666 KIEDSLKEGDIIEVKYLGIDPKTK 689


>gi|226323220|ref|ZP_03798738.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
 gi|225208410|gb|EEG90764.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
          Length = 695

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/692 (40%), Positives = 427/692 (61%), Gaps = 17/692 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++ GR+A+Q++GAVL  YG+TVVL+T       ++G DFFPL+V Y E+ 
Sbjct: 6   EMELAGRTLRVDVGRVAKQANGAVLMHYGDTVVLSTATASDKPREGIDFFPLSVEYNEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  + + SP 
Sbjct: 66  YAVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVLSVEQDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ ++ A  +S +PF+GP    QV  ++G+ V NP  ++ + S L L V+ T++ V+
Sbjct: 126 LTAMLGSAIATAISDIPFDGPTASTQVGLVDGELVFNPTAEQKEKSDLALTVASTREKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  +L+AI   H   + VI  I ++   C K     D   F+  EE    
Sbjct: 186 MIEAGANEVPEAKMLEAIFAAHEVNQKVIAFIDQIVAECGKPK--HDYVSFAVPEELFEA 243

Query: 247 MIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDIQA 300
           + K    E++ V+ F  +K  R + I  + +K+   F +++  W    GE V  +   Q 
Sbjct: 244 IQKIVTPEEMEVAVFTDDKQTREENIRKITEKLEEAF-ADNEEWLAKLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR ++L    R DGR  E +R ++A++ L+ R HGS++F RG TQ   + TL    + 
Sbjct: 300 KVVRKMILKDHKRPDGRAIEEIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q VD L  ++ +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QKVDGLDESETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L+
Sbjct: 420 PYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISCGLVTGATDDDYLVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + ++ R++IL+E M+
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTRKARVYILDEVMA 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++E R Q+G++ P++  M I P +I  V+G  GK I  I+E+TG K++I D+G+V I 
Sbjct: 540 KTIAEPRAQVGKYAPKIIQMNIDPAKIGEVVGQRGKTINAIIEKTGVKIDITDEGSVSIC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 +E AR+MI +I    E   + +G VV + +FGAF+ F   ++G+VHIS+++ +R
Sbjct: 600 GVDADSMEQARKMIATIVTDFEAGMVLEGDVVSIKEFGAFIEFAPGKEGMVHISKIAKQR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +    DV+  GD V V  L  D  G++  S+K
Sbjct: 660 IDHVEDVLSIGDHVKVVCLGKDKMGRLSFSIK 691


>gi|332882701|ref|ZP_08450313.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679501|gb|EGJ52486.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 747

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/684 (41%), Positives = 428/684 (62%), Gaps = 23/684 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+   G  ++LATVV  R +    DF PLTV+Y+E+  A G+
Sbjct: 15  GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSARDINPETDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++ HD    P  ++ +
Sbjct: 75  FPGGFFKREARPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASA L +S +PF+GP+   +V  +NG++++NP  ++ + S +D+ V  ++D V MVE E
Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIV----IDSKDFSKLE 241
            +++SE  + +AI F H   KP IEA  +LA+   K      EP V    + +K +    
Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEVENEEVKAKVYPLAY 254

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E+   + KE+         K  R ++ + +K++ ++ F+ E        I   F D + +
Sbjct: 255 EKCYAIAKENTT-------KQERGEKFNAVKEECLALFTEEELEELTPLITRYFGDAEKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTLGT  +  
Sbjct: 308 AVRNLILEENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREAN 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P+    PY
Sbjct: 368 VIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--PY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DGD + +LSDI G
Sbjct: 426 TVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLISDGDRYAVLSDILG 485

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +++  +++
Sbjct: 486 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIAQ 545

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASS 598
               +    P++  M +P + I   IG GGK I+ +  +T   + +++ G    V+I  +
Sbjct: 546 PNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTKTTIVVEEVGELGIVEILGT 605

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS++S +RV 
Sbjct: 606 DEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRVD 665

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGK 682
           K  D +KEGD + VK L  D + K
Sbjct: 666 KIEDALKEGDIIEVKYLGIDPKTK 689


>gi|253580814|ref|ZP_04858077.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847884|gb|EES75851.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 697

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/696 (40%), Positives = 424/696 (60%), Gaps = 19/696 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++  R+A+Q++GA L  YG+T VL+T    +  ++G DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDINRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E +P +
Sbjct: 67  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPEI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLM 187
            +M+ +S A  +S +PF+GP    QV  ING+Y++NP +  +D   L L V+ T++ V+M
Sbjct: 127 PAMLGSSIATCISDIPFDGPCATTQVGLINGEYIINPTMAQKDVSDLQLTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  A ++ ED +++AI   H   + +I+ I K+ + C K      S +   + EE+   
Sbjct: 187 IEAGAKEVPEDKMIEAIYKAHEVNQEIIKFIDKIVEECGKPK---HSYESCAVPEELFAA 243

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IKE     ++ V+ F  +K  R + I  + +K+   F ++   W    GE V  +   Q 
Sbjct: 244 IKEVVPPAEMEVAVFSDDKQTREENIRQVTEKLKEAF-ADKEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+  ++ R HGS++F RG TQ   + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAITQIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLAEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QKLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGDTDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M 
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVME 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++  R  +GE+ P++  + I P +I +V+G  GK I  I+E+TG K++I D+G V I 
Sbjct: 540 KCIAAPRTTVGEYAPKIIQIQIDPQKIGDVVGQRGKTINTIIERTGVKIDITDEGAVSIC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 ++ A  M++ I    E  +I+ G+VV + +FGAFV F   ++G+VHIS++  ER
Sbjct: 600 GVDQKSMDEAANMVKIIATDFEAGQIFTGKVVSIKEFGAFVEFAPGKEGMVHISKICKER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + +  DV+  GD V V  L  D  G+I  SMK V +
Sbjct: 660 INRVEDVLTLGDKVKVICLGKDKMGRISFSMKDVPE 695


>gi|260589519|ref|ZP_05855432.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
           20583]
 gi|260540087|gb|EEX20656.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
           20583]
          Length = 691

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/696 (40%), Positives = 427/696 (61%), Gaps = 19/696 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRILTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  +   VM  D E +P V
Sbjct: 61  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPEV 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           V+M+ +S A  +S +PF+GP    Q+  +NG+ V+NP L + + S L L V+ T++ V+M
Sbjct: 121 VAMLGSSIATCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISDLQLTVASTREKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ E  +++AI   H   + +I  I K+   C KE     S +   + EE+   
Sbjct: 181 IEAGANEIPEAKMIEAIFKAHEVNQEIIAFIDKIVAECGKEK---HSYESCAVPEELFAA 237

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E++  + F  EK VR + I  + +K+   F +E+  W    GE V  +   Q 
Sbjct: 238 IKEIVTPEEMEEAVFTDEKQVREENIRVITEKLEEAF-AENEEWLAVLGEAVYQY---QK 293

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+  ++ R HGS++F RG TQ   + TL    + 
Sbjct: 294 KTVRKMILKDHKRPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSEA 353

Query: 361 QYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   +    +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +F
Sbjct: 354 QRLDGLDEFEVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEF 413

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV  +  DD+++L+
Sbjct: 414 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGETDDDYLVLT 473

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K  R +IL E M 
Sbjct: 474 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVME 533

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R  + ++ P++  + I P++I +V+G  GK I  I+++TG K++IDD+G V I 
Sbjct: 534 KCIPAPRKTVSKYAPKIVQIQIDPEKIGDVVGQRGKTINAIIDETGVKIDIDDNGGVSIC 593

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    ++ A E I++IT   +  +I+ G+V+ + +FGAF+ F   ++G+VHIS++S ER
Sbjct: 594 GTDQHMMDKAVEYIKTITTDYQEGQIFTGKVISIKEFGAFLEFAPGKEGMVHISKISKER 653

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+  GD V V  L  D  G+I  SMK V +
Sbjct: 654 IEKVEDVLSIGDVVKVVCLGKDKMGRISFSMKDVPE 689


>gi|153812986|ref|ZP_01965654.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
 gi|149830933|gb|EDM86023.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
          Length = 691

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 279/696 (40%), Positives = 431/696 (61%), Gaps = 19/696 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VL+T    +  ++G DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E +P +
Sbjct: 61  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPEI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S A  +S +PF+GP    QV  I+G++V+NP L + + S L L V+ T++ V+M
Sbjct: 121 PAMLGSSIATCISDIPFDGPCATTQVGLIDGEFVINPSLAQKELSDLQLTVASTREKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED +++AI   H+  + +I  I K+   C KE  +  S     + EE+ + 
Sbjct: 181 IEAGANEVPEDTMIEAIYKAHDVNQEIIRFIDKIVAECGKEKHLYAS---CAVPEELFEA 237

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E++  + F  +K  R + I ++  ++   F +++  W    GE V  +   Q 
Sbjct: 238 IKKIVPPEEMEEAVFTDDKQTREENIREITARLQDAF-ADNEEWLAVLGEAVYQY---QK 293

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   + TL    + 
Sbjct: 294 KTVRKMILKDHKRPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEA 353

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 354 QRIDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSAEEF 413

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+I+L+
Sbjct: 414 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGATDDDYIVLT 473

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M 
Sbjct: 474 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVME 533

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++  R  + ++ P++  + I P +I +V+G  GK I  I+E+TG +++I D+G V I 
Sbjct: 534 KCIAAPRDHVNKYAPKIVQIQIDPQKIGDVVGQRGKTINAIIERTGVQIDITDEGAVSIC 593

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 ++ A++MI++I    E  +I++G VV + +FGAFV F   ++G+VHIS++S  R
Sbjct: 594 GVDQHGMDEAKKMIKTIATDFEAGQIFEGTVVSIKEFGAFVEFAPGKEGMVHISKISDHR 653

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + +  DV+  GD V V  +  D  G++  S+K V +
Sbjct: 654 INRVEDVLTLGDKVKVICMGKDKMGRMSFSIKDVPE 689


>gi|300868336|ref|ZP_07112962.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
           6506]
 gi|300333629|emb|CBN58148.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
           6506]
          Length = 714

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 292/695 (42%), Positives = 422/695 (60%), Gaps = 20/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GAVL   G+T VL T    +  ++G DF PL V+Y+ER Y
Sbjct: 8   ISFDGRDIRLKIGLLAPQAGGAVLIQSGDTSVLVTATRAQG-REGIDFLPLLVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP E   L  R+IDR +RPLF    +++ QV+   +  D E  P V
Sbjct: 67  AGGKIPGGFLRREGRPPEKVTLTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF GP+   +V  +   +++NP   E   G LDL V+G+ D V+M
Sbjct: 127 LAVTGASVAVLLAKMPFYGPMAAVRVGLVGDDFIINPTYKEIKTGELDLVVAGSPDGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+     +I+A  ++      ++  +E    D    + + +
Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAASDLIQAQREIMAELGIELIREERPETDPTLENFIRD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEGEIVS 293
                IK+ L  S F  +K  R   +D++K   V    +E          +  +   I +
Sbjct: 247 RAEAPIKQIL--SQFELDKKARDTALDEVKAAAVVAAIAELAEDDPVRVAAGVDSKAIAN 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVV 352
           VF+D+  K++R  +++  VR+DGR  + VR +S +V +L  R HGSSLF RG TQ +  V
Sbjct: 305 VFKDVTKKLMRRQIVEDGVRVDGRKLDEVRPVSCRVSVLPSRVHGSSLFNRGLTQVMSAV 364

Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQDLGDDLHPQDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAILP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP  A FPY +R+VSE+  S+GS+SM +VC S+LALMDAGVP+ +PV+G AMGL+K+GD
Sbjct: 425 VLPPQADFPYVIRVVSEVLSSNGSTSMGSVCASTLALMDAGVPLIQPVSGAAMGLIKEGD 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+   ++  A+ +AK  RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLPLQVIAEAIHKAKPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   + + R  +  F PR+  + I P+ I  VIG GGK I+ I E+TG K++IDDDG
Sbjct: 545 LEKMLSTIDKPRTTMSPFAPRLLTLKIEPEFIGLVIGPGGKTIKAITEETGVKIDIDDDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA +       A  +I+ +T       +Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIAGNDSERAARAYNIIQGMTRKLNAGDVYVGRVTRIIPIGAFVEILPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV K  D +   D V VK+ + D++G+I L+
Sbjct: 665 LADYRVGKVEDELAVADEVIVKVREIDNKGRINLT 699


>gi|291519474|emb|CBK74695.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 693

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/699 (40%), Positives = 430/699 (61%), Gaps = 19/699 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T  ++ AGR L+++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V +
Sbjct: 1   MKTFTMDLAGRTLRVDIGRVAAQANGAAFIQYGDTTVLSTATASDKPRDGIDFFPLSVEF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+TYAVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 61  EEKTYAVGKIPGGFNKREGKASENSVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDPQ 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P +V+M+ A+ A  +S +PF+GP    Q+  I+G++++NP  ++ D+G L L V+ T+
Sbjct: 121 CRPELVAMLGAAIATCISDIPFDGPCAMTQMGMIDGEFIVNPSQEQWDKGDLKLTVASTR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237
           + V+M+E  AN + ED +++AI   H+  + VI  I ++ K C K         I  + F
Sbjct: 181 EKVIMIEAGANIIPEDKMIEAIYKCHDVNQTVIAFIDEMVKECGKPKHEYTSCAIPEELF 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295
           +K++E +     E+   + F  EK VR + I  + +++   F +E+  W    GE +  +
Sbjct: 241 AKMKEIVPPAEMEE---AVFTDEKQVREENIRQITERLEEAF-AENEEWLAVLGEAIYQY 296

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E    K VR ++L    R DGR+   +R ++A+V ++ R HGSS+F RG TQ   VVTL 
Sbjct: 297 E---KKTVRKMILKDHKRPDGREITQIRPLAAEVDIIPRVHGSSMFTRGQTQICDVVTLA 353

Query: 356 TREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
              + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP
Sbjct: 354 PLSEAQKIDGLDAFVTEKRYMHHYNFPAYSVGETKPSRGPGRREIGHGALAERALLPVLP 413

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDD 472
              +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DD
Sbjct: 414 TPEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDD 473

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R  I+
Sbjct: 474 FVLLTDIQGLEDFFGDMDFKVTGTKEGITAIQMDIKIHGLTRPIVEGAIARCREARFFIM 533

Query: 533 -NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
            N MSK ++E R Q+GE+ P++  ++I P++I +V+G  GK I  I+ +   K++I DDG
Sbjct: 534 DNCMSKAIAEPRPQVGEYAPKIIQLSIDPEKIGDVVGQRGKTINEIIARCDVKIDITDDG 593

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I  +  A+++ A+ MI  IT   E ++I  G+VV + +FGAF+ F   ++G+VHIS+
Sbjct: 594 NVSICGTDAAKMDEAKRMIEIITTDFEKDQILTGKVVSIKEFGAFIEFAPGKEGMVHISK 653

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++ ER+ +  DV+  GDTV V  L  D  G+I  S+K V
Sbjct: 654 IAKERIDRVEDVLTLGDTVKVVCLGKDKMGRISFSIKDV 692


>gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium
           nodosum Rt17-B1]
 gi|187610262|sp|A7HK24|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 693

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/692 (40%), Positives = 440/692 (63%), Gaps = 22/692 (3%)

Query: 10  EWA----GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           EW     GR    + G++A+QS G++ A +G++VVLATV    ++ +G DF PLTV + E
Sbjct: 3   EWRKNLFGREWLFQHGKVAKQSAGSIWARFGDSVVLATVNVSDNVVEGIDFVPLTVEFME 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+++RE +P+E+ IL SR+IDR IRPLF K  +NE QVI+ V+  D    
Sbjct: 63  KFYAAGKIPGGFVKREGKPSESGILSSRLIDRPIRPLFPKNLRNEVQVIVTVLSVDPNCP 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             V+ + AAS AL +S +PF+G V G Q+ Y++GQ+++ P  ++ ++  +D+ V+GT+DA
Sbjct: 123 TDVLGITAASLALNISRVPFDGIVAGVQIGYVDGQFIVFPTAEQLERSKIDIVVAGTKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243
           + MVE EA +++E+ +L A++  H   K ++    ++ K    E + +    ++ +L E+
Sbjct: 183 ITMVEGEAKEVTEEEMLQALMTAHEAIKQIVAFQEEVIKEFNVEKMPLPEPKYNVELVEK 242

Query: 244 MSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSV-----FE 296
             + I   +L    F   K  R +  D+  + +V  +F   +    E E  ++     ++
Sbjct: 243 FVEYIDMTELEKRIFARGKQERAEMADEYYESIVQKFFEDNNIPEEEQEEYAIPLKEKYD 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I  K++R +++++ +R DGR  + +R I+ +VGLL RTHGSSLF RG+TQ++ +VTLG+
Sbjct: 303 EISKKLMRKIIIERGLRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIVTLGS 362

Query: 357 REDEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
             +EQ +D+L   GT+R  F++HYNF P +TGEV  +  PSRREIGHG LA RA+  ++P
Sbjct: 363 PAEEQIIDTLIEEGTKR--FILHYNFPPFSTGEVKPLRGPSRREIGHGHLAERAVKAIIP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY +R+VSEI ES+GSSSMATVC +SLALMDAGVP  K VAG+AMGL+ +    +
Sbjct: 421 PEDEFPYVIRVVSEILESNGSSSMATVCSASLALMDAGVPTKKHVAGVAMGLILEEGKGV 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDH G MDFKVAGT  GITA QMD K+ G+SE ++  AL QAK  R+ IL++
Sbjct: 481 ILTDIIGLEDHWGDMDFKVAGTKDGITAFQMDCKVSGVSEELLRQALYQAKEARMFILDK 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTV 593
           + + +SE R +L  + PR+    I P +   +IG GGK I+ I++    ++++DD  G V
Sbjct: 541 LYETISEPRKELSPYAPRISWFFIDPTRSGELIGPGGKTIKSIIKMFDVEISLDDSTGKV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            ++     +++ A E I+++     +  +Y G+V +V ++G FV     + GLVH S+L 
Sbjct: 601 TVSGVDAEKVQEAVEYIQNMFRDISIGDLYTGKVTRVENYGIFVEIMPGKIGLVHSSKLG 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              V  TS   K GD + V++++ DD G+++ 
Sbjct: 661 N--VKPTS--FKVGDKIKVEVINIDDAGRLQF 688


>gi|291523665|emb|CBK81958.1| polyribonucleotide nucleotidyltransferase [Coprococcus catus GD/7]
          Length = 697

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/695 (40%), Positives = 425/695 (61%), Gaps = 19/695 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +  +E AGR L++E G +A Q++GA L  YG+T VL+T       +DG DFFPL+V ++E
Sbjct: 7   SFSMELAGRTLRVEVGHVAAQANGAALMYYGDTCVLSTATASEKPRDGIDFFPLSVEFEE 66

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + Y+VGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D   S
Sbjct: 67  KMYSVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLCVDQTCS 126

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +M+ ++ A  +S +PF+GP    QV  ING++++NP  ++   S L L V+ T++ 
Sbjct: 127 PELTAMLGSAIATCISDIPFDGPCAMTQVGMINGEFIINPSNEQKSVSDLALTVASTREK 186

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEE 242
           V+M+E  AN++ ED +++AI   H+  + +I+ I ++   C KE      KD+    + E
Sbjct: 187 VIMIEAGANEVPEDKMIEAIYAAHDVNQEIIKFIDQIVAECGKE-----KKDYEHYAIPE 241

Query: 243 EMSQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           E++  +K     E +  + F  EK  R   I  +K K+   F ++   W      +V++ 
Sbjct: 242 ELNAAMKELFPPEAMEEAVFADEKQTRDANIRVIKDKLAEAF-ADKEEWLPLIDDAVYQ- 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR  + +R ++A++ L  RTHGS++F RG TQ   + TL   
Sbjct: 300 YQKKTVRKMILKDHKRPDGRAIDQIRPLAAEIDLFARTHGSAMFTRGQTQICTITTLAPL 359

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            D Q VD L+       +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 360 SDAQKVDGLNEFVTSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSE 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474
            +FPY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD++
Sbjct: 420 EEFPYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGDTDDDYL 479

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K+ R +IL E
Sbjct: 480 VLTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKQAREYILTE 539

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            +   +SE R ++GEF P+++ + I P +I +V+G  GKVI  I+++TG K++I DDG V
Sbjct: 540 IIEPCISEPRKEVGEFAPKIQQIKIDPSKIGDVVGQKGKVINQIIDETGVKIDITDDGAV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I       I+ A +MI  I    E  +IY G+VV + +FGAF+ F   ++G+VHIS+L 
Sbjct: 600 SICGVDKVGIQKAIDMITMIVSDFEEGRIYTGKVVSIKEFGAFLEFAPGKEGMVHISKLD 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +R+    DV+  GD + VK +  D  G+I  S K
Sbjct: 660 KKRINHVEDVLTLGDVIKVKCMGKDKMGRISFSKK 694


>gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
           43644]
 gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
           43644]
          Length = 766

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 293/701 (41%), Positives = 427/701 (60%), Gaps = 13/701 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE     + L LETG++A+Q+ G+V+   G T+ L  VV     ++G DFFPL V Y+E+
Sbjct: 18  VEATIGDKLLILETGKLAKQATGSVVVQVGGTMSLVAVVTAPG-REGLDFFPLQVEYREK 76

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GK PGG+++RE RPT  +IL SR+IDR IRPLF + Y++E Q+  + +  D  + P
Sbjct: 77  VYAAGKFPGGFIKREGRPTTKDILTSRLIDRPIRPLFPEWYRDEVQIQASPISADRINDP 136

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+SM+ ASAAL L+  PF GPV   +V  I+G+ V  P  +E +Q  LDL V+ T   +
Sbjct: 137 DVLSMIGASAALCLTPAPFLGPVGSIRVGRIDGRLVPLPTAEEMEQSDLDLVVASTTSKI 196

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           +M+E    +L E  + DAI+  H   + VI    +L       P+         L + + 
Sbjct: 197 VMIEGFGQELPESEMFDAIMKAHEYNQAVIALQHELRAAVGLPPMEPPPPRHDPLVDYLY 256

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIVSVFED 297
           Q   +++R +  I  K  R   +D L+ ++V+  ++          +   E  + + F++
Sbjct: 257 QRYGDEIRQAKRIVAKLERYAVMDQLRARVVAETTAAPVPGVGDPETPPTELAVKAAFKE 316

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            + +VVR ++LD  +R DGR  + +R IS +VGLL + HGS+LF RG+TQA+V   LGT 
Sbjct: 317 AETRVVRAMILDG-LRSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQALVTTVLGTA 375

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D +       FM+ YN    A GEV  +  P RREIGHG LA R++ PVLP  A
Sbjct: 376 ADEQRIDGIMDEYTKKFMLDYNMPSFAVGEVRPIRGPGRREIGHGALAERSVAPVLPDPA 435

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPYT+R+VS+I ES+GSSSMA+VCG++L+LMDAGVPIS PV GI++GLV D   D F++
Sbjct: 436 RFPYTIRVVSDILESNGSSSMASVCGATLSLMDAGVPISDPVGGISIGLVWDEPTDRFVL 495

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDH G MDFKVAGT  G+T +Q+D+K  GIS  I+   L QA   R+ IL  M
Sbjct: 496 LTDIIGDEDHYGDMDFKVAGTQRGVTGIQLDLKNLGISPRIVRETLDQALEARMEILRTM 555

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +   R  + E  PR+  + + P++I  +IG GGK IR + E+TGAK+ ID+ G + I
Sbjct: 556 LRSIKRPRDHISENAPRLIQIQVNPEKIGLIIGPGGKTIRRLEEETGAKIEIDNSGVITI 615

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +       + AR+ I+ +T+  +V KIY G+V  + DFGAFV     +DGLVHIS+L+  
Sbjct: 616 SCVRAEGAQDARDRIQGMTEGVQVGKIYDGRVSSIKDFGAFVEILPGKDGLVHISELTEG 675

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V+  +DV K GD + VK++  D++ ++KLS K      G+
Sbjct: 676 YVSSVADVCKVGDVMPVKVILVDEQDRVKLSRKAALAELGQ 716


>gi|189465341|ref|ZP_03014126.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
           17393]
 gi|189437615|gb|EDV06600.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
           17393]
          Length = 714

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 291/701 (41%), Positives = 438/701 (62%), Gaps = 19/701 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  D+ ++  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V         +E
Sbjct: 185 ENIMMVEGEMSEVSELDLLNAMKAAHEAIKVQCQAQKELAEAVGS--TVKREYCHEVNDE 242

Query: 243 EMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E+ + + +      +         K+ R    D ++++  + FS E  S     I   + 
Sbjct: 243 ELRKAVHDACYAKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELSEKAALIDRYYH 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++ + +R  +LD+  R+DGR ++ +R I +++  L   HGS++F RG+TQ++  VTLGT
Sbjct: 303 DVEKEAMRRSILDEGKRLDGRKTDEIRPIWSEISYLPGPHGSAIFTRGETQSLATVTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   +P  
Sbjct: 363 KLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQIP-- 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFI 474
           A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I +PV+GIAMGL+K+   D + 
Sbjct: 421 ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIAMGLIKNPGEDKYA 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT +GITA QMD+K+ G+S +I+  AL QAK GR+HIL +
Sbjct: 481 VLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKVDGLSFDILERALNQAKEGRMHILGK 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDG 591
           + + + E R +L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I   D+ G
Sbjct: 541 ILETIQEPREELKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEEVDNIG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            ++I+ ++   I+ A  +I+ I  VPEV ++YKG+V  VM +GAFV F   +DGL+HIS+
Sbjct: 601 RIEISGTNKKSIDDAMRLIKGIVAVPEVGEVYKGKVRSVMPYGAFVEFLPGKDGLLHISE 660

Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 661 IDWKRLETVEEAGIKEGDEIEVKLLDIDPKTGKFKLSRKVL 701


>gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM
           22836]
          Length = 723

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 291/696 (41%), Positives = 435/696 (62%), Gaps = 26/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y+E+  A G+
Sbjct: 14  GRTITIETGKLAKQADGSVMVRMGNTMLLATVCAAKDANPGVDFMPLQVEYKEKFAAYGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE R ++ EIL+ R++DR++RPLF   Y  E  V + +   D E  P  ++ +
Sbjct: 74  FPGGFQRREGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFSSDGEDMPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  ++GQ++LNP   +  +  +D+ V  T D ++MVE E
Sbjct: 134 AASAALAVSDIPFNGPISEVRVARVDGQFILNPTFSQLAKADMDIMVGATIDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  +L+AI F H   K   +A  +L ++          +++S   E   + +++D
Sbjct: 194 MKEVSEVEMLEAIKFAHEAIKVQCQAQIELMELVG----TTKKREYS--HETNDEDLRKD 247

Query: 252 LRVSCFIPEKYV-------RCKQIDDLKKKMVSYFS--SEHSSWNEGEIVS-VFEDIQAK 301
           +   C+     V       + +++D+ K     Y +  +E     +G ++S  + D++ +
Sbjct: 248 VWEKCYDKAYAVAASGNTNKHERVDNFKAIEEEYKANLTEEELAEKGALISRYYHDVEKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD+  R+DGR +  +R I ++V  L   HGS++F RG+TQ++  VTLGT+ DE+
Sbjct: 308 AMRRSILDEGKRLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKLDEK 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +    +  F++HYNF P +TG+        RREIGHG LA RA+ P++P  + +PY
Sbjct: 368 IIDDVLNNGKERFLLHYNFPPFSTGDARPQRGVGRREIGHGNLAHRALKPMIP--SDYPY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479
            +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV GIAMGL+  K G +F +LSDI
Sbjct: 426 VIRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVTGIAMGLISEKKGTNFAVLSDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QA+ GRLHI+ ++ + L
Sbjct: 486 LGDEDHLGDMDFKVCGTKDGITATQMDIKVDGLSYEILEKALNQAREGRLHIMGKILETL 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTVKIA 596
            E R    E  PR+E++ I  + I  VIG GGK+I+GI E+TGA V    ID  G V+++
Sbjct: 546 PEPRADFKENAPRIEVLIISKEFIGAVIGPGGKIIQGIQEETGATVTIEEIDGYGRVEVS 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +++   I+AA   IR I  VPEV ++Y  +V  VM +GAF  F   +DGL+HIS++S +R
Sbjct: 606 ATNKTAIDAAMAKIRGIVTVPEVGEVYTAKVRSVMPYGAFCEFLPGKDGLLHISEISWDR 665

Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           V     V +KEGD + VKL+D D + GK KLS KV+
Sbjct: 666 VEDMEKVGLKEGDKIEVKLIDIDPKTGKFKLSRKVL 701


>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 897

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 294/747 (39%), Positives = 444/747 (59%), Gaps = 65/747 (8%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG I RQ+ G+V+ T GET+V  +V    +  D  DFFP++V+YQE
Sbjct: 90  SVKIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTPSDPSDFFPMSVHYQE 149

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+L+ R+IDR +RP   K +  ETQ++  V  +D   S
Sbjct: 150 RLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGLHS 209

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P  V++ AA  A+ LS +P +  + G ++  IN Q+V+NP  ++ + S LDL ++GT  A
Sbjct: 210 PDCVAVTAAGIAMALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMEDSELDLMMAGTDSA 269

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK----EPIVIDSKDFSKL 240
           +LM+E   N L+E+ +L A+  G    + + +AI  L + C K    E I +   +  + 
Sbjct: 270 ILMIEGFCNFLTEEKLLQAVETGQAAIREICKAIDVLVQTCGKKKMVEAINLPPTELYRH 329

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV------SYFSSEHSS--------- 285
            E++S    E+L  +  I EK +R K +  L++K++       Y S +  S         
Sbjct: 330 VEDLS---GEELVKALQIKEKILRRKALSALEEKVIMILSEQGYVSKDELSGTIENLADI 386

Query: 286 ---------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKV 312
                                            ++E ++  VF+++ +K +R  +++ + 
Sbjct: 387 VEEEDEDEVIEDGEVDEGDVHIKPVSRKPRRQLFSEVDVKLVFKEVSSKYLRRRIVEGEK 446

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R I++Q G+L R HGS+LF RG+TQA+ VVTLG  +  Q +D+L  T+ +
Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506

Query: 373 -DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             F + Y F P + GEV R GAP+RREIGHG LA RA+ P+LP    FPYT+R+ S ITE
Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPPEVDFPYTIRVESTITE 566

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDH 485
           S+GSSSMA+VCG  LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED 
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTHEFGGDGTPLILSDITGSEDA 626

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAG + GI+A QMD+K+ GI+  +M  AL QA+ GR HILNEM K        
Sbjct: 627 SGDMDFKVAGNEHGISAFQMDIKVVGITLPVMEQALLQARDGRNHILNEMLKCSPPPSKA 686

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIE 604
           L    P + +M + P+++  +IG GG+ I+ I+E+TG   ++  DDGTVKI +  +  +E
Sbjct: 687 LSPHAPVIHVMKVKPNKVNLIIGSGGRTIKSILEETGVYAIDARDDGTVKITARDMKSLE 746

Query: 605 AAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            ++ +I ++T VP+V +I++   +K V  +GAFV     R+GL HIS+LS+  +AK  D 
Sbjct: 747 KSKNIITNLTMVPKVGEIFRNCEIKTVAPYGAFVEIAPGREGLCHISELSSSWLAKAEDA 806

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K GD + VKL++ +D+G+++LS K +
Sbjct: 807 YKVGDRIDVKLIEINDKGQLRLSCKAL 833


>gi|213961824|ref|ZP_03390090.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213955613|gb|EEB66929.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 744

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/685 (41%), Positives = 424/685 (61%), Gaps = 25/685 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+   G  ++LATVV  + +    DF PLTV+Y+E+  A G+
Sbjct: 15  GRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++ HD    P  ++ +
Sbjct: 75  FPGGFFKREARPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLISHDENVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           AASA L +S +PF+GP+   +V  +NGQ+++NP  ++ + S +D+ V  ++D V MVE E
Sbjct: 135 AASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASDIDIMVGASKDFVAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK------EPIVIDSKDFSKLEEEMS 245
            +++SE  + +AI F H   KP IEA  +LA+   K      EP V +        EE+ 
Sbjct: 195 MDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRSYEPEVEN--------EEVK 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             + +     C+   K    KQ        +K++ ++ F+ E        I   F D + 
Sbjct: 247 VKVYDFAYNKCYAIAKENTTKQERGEKFAAVKEECLALFTEEELEELTPIITRYFGDAEK 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTLGT  + 
Sbjct: 307 EAVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREA 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
             +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P+    P
Sbjct: 367 NVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDC--P 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DG+ + +LSDI 
Sbjct: 425 YTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +++  ++
Sbjct: 485 GDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITDTIA 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIAS 597
           +    +    P++  M +P + I   IG GGK I+ +  +T   + +++ G    V+I  
Sbjct: 545 QPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGIVEILG 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS++S +R+
Sbjct: 605 TDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVSWDRI 664

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK 682
            K  D +KEGD + VK L  D + K
Sbjct: 665 EKIEDALKEGDIIEVKYLGIDPKTK 689


>gi|160883669|ref|ZP_02064672.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
 gi|156111082|gb|EDO12827.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
          Length = 752

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/705 (40%), Positives = 440/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 50  VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 108

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 109 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 168

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 169 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 228

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 229 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 282

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 283 VNDEDLRKAVREACYEKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKGALID 342

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 343 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 402

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 403 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 462

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 463 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 520

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 521 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 580

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           IL ++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 581 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 640

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 641 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 700

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 701 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVL 745


>gi|295110267|emb|CBL24220.1| polyribonucleotide nucleotidyltransferase [Ruminococcus obeum
           A2-162]
          Length = 697

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 279/696 (40%), Positives = 430/696 (61%), Gaps = 19/696 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VL+T    +  ++G DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E +P +
Sbjct: 67  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPEI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ +S A  +S +PF+GP    QV  I+G++++NP L + + S L L V+ T++ V+M
Sbjct: 127 PAMLGSSIATCISDIPFDGPCATTQVGLIDGEFIINPSLAQKELSDLQLTVASTREKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED +++AI   H+  + +I  I K+   C KE  +  S     + EE+ + 
Sbjct: 187 IEAGANEVPEDTMIEAIYKAHDVNQEIIRFIDKIVAECGKEKHLYAS---CAVPEELFEA 243

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E++  + F  +K  R + I ++  ++   F  ++  W    GE V  +   Q 
Sbjct: 244 IKKIVPSEEMEEAVFTDDKQTREENIREITARLQDAF-VDNEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QRIDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSAEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+I+L+
Sbjct: 420 PYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGATDDDYIVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M 
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVME 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++  R  + ++ P++  + I P +I +V+G  GK I  I+E+TG +++I D+G V I 
Sbjct: 540 KCIAAPRDHVNKYAPKIVQIQIDPQKIGDVVGQRGKTINAIIERTGVQIDITDEGAVSIC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 ++ A++MI++I    E  +I++G VV + +FGAFV F   ++G+VHIS++S  R
Sbjct: 600 GVDQHGMDEAKKMIKTIATDFEAGQIFEGTVVSIKEFGAFVEFAPGKEGMVHISKISDHR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + +  DV+  GD V V  L  D  G++  S+K V +
Sbjct: 660 INRVEDVLTLGDKVKVICLGKDKMGRMSFSIKDVPE 695


>gi|299147541|ref|ZP_07040605.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
 gi|298514328|gb|EFI38213.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
          Length = 752

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/705 (40%), Positives = 440/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 50  VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 108

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 109 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 168

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 169 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 228

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 229 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGKTVKRE------YNHE 282

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 283 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 342

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 343 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 402

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 403 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 462

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 463 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 520

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 521 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 580

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           IL ++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 581 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 640

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 641 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 700

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 701 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVL 745


>gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 720

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 294/708 (41%), Positives = 432/708 (61%), Gaps = 36/708 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + LETG++A+Q+DG+V+   G T++LATV   +  K   DF PL V Y+E+  A G+
Sbjct: 13  GRTITLETGKLAKQADGSVMLRMGNTMMLATVCAAKDAKPDVDFMPLQVEYKEKFAAFGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+LRRE R ++ EIL+ R++DR++RPLF   Y  E  V + +   D    P  ++ +
Sbjct: 73  FPGGFLRREGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFSSDGIDMPDALAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  ++GQ++LNP   + +Q  +D+ V  T D ++MVE E
Sbjct: 133 AASAALAVSDVPFNGPISEVRVARVDGQFILNPTFAQVEQADMDIMVGATIDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
             ++SE  +L+AI   H     +C+  IE +  + K   +E             E   + 
Sbjct: 193 FKEVSEAEMLEAIKVAHEAIKIQCQAQIELMEAVGKTVKRE----------YCHEVNDEE 242

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----------SEHSSWNEGEIVS-VFE 296
           +++D+   C+  + Y      +  K +    F+          +E     +G ++S  + 
Sbjct: 243 LRKDVWAKCY-DKAYAVAASANTNKHERGDNFAAIVDEYKAGLTEEELAEKGSLISRYYH 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++ + +R  +LD+  R+DGR +  +R I ++V  L   HGS++F RG+TQ++  VTLGT
Sbjct: 302 DVEKEAMRRSILDEGKRLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVTLGT 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DE+ +D +    +  F++HYNF P +TG+        RREIGHG LA RA+ P++P  
Sbjct: 362 KLDEKIIDDVLNNGKERFLLHYNFPPFSTGDARPQRGVGRREIGHGNLAHRALKPMIP-- 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFI 474
           A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV GIAMGL+  K G +F 
Sbjct: 420 ANYPYVIRVVSDILESNGSSSMATVCAGTLALMDAGVQIKKPVTGIAMGLISEKKGTNFA 479

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QA+ GRLHI+ +
Sbjct: 480 VLSDILGDEDHLGDMDFKVCGTKDGITATQMDIKVDGLSYEILEKALNQAREGRLHIMGK 539

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDG 591
           + + L E R    E  PR+E++ I  + I  VIG GGK+I+GI E+TGA V    ID  G
Sbjct: 540 ILETLPEPRADFKENAPRIEVIIINKEFIGAVIGPGGKIIQGIQEETGATVTIEEIDGYG 599

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V+I+++S   IEAA   I+ I  VPEV ++Y  +V  VM +GAF  F   +DGL+HIS+
Sbjct: 600 RVEISATSRTSIEAAVAKIKGIVAVPEVGEVYTAKVRSVMPYGAFCEFLPGKDGLLHISE 659

Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           +S +R+       +KEGD + VKL+D D + GK KLS KV+     +P
Sbjct: 660 ISWDRIEDMEKAGLKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPPRP 707


>gi|260175214|ref|ZP_05761626.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. D2]
 gi|315923445|ref|ZP_07919685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
 gi|313697320|gb|EFS34155.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
          Length = 708

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/705 (40%), Positives = 440/705 (62%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E   ++ K   +E       +  
Sbjct: 185 ENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGKTVKRE------YNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYEKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKGALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           IL ++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 537 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVL 701


>gi|87303144|ref|ZP_01085942.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           5701]
 gi|87282311|gb|EAQ74271.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           5701]
          Length = 678

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/677 (42%), Positives = 409/677 (60%), Gaps = 16/677 (2%)

Query: 31  VLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEIL 90
           +L   G+T VL T    +  ++G DF PLT +Y+ER YA G+IPG + RRE RP E  IL
Sbjct: 1   MLVECGDTAVLVTATRSKG-REGIDFLPLTCDYEERLYAAGRIPGSFFRREGRPPERAIL 59

Query: 91  ISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVV 150
            +R+IDR +RPLF    +++ QV+   +  D    P V+++  AS A +L+ +PF GP+ 
Sbjct: 60  TTRLIDRPLRPLFPSWLRDDLQVVATCLSLDERVPPDVLAVTGASIATLLAKIPFSGPMA 119

Query: 151 GAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHN 209
             +V  +   +VLNP   E ++  LDL V+GT   V+MVE  ANQL E  V++AI FG+ 
Sbjct: 120 AVRVGLLGDDFVLNPSYREIERSELDLVVAGTPTGVVMVEAGANQLPEQDVIEAIDFGYE 179

Query: 210 ECKPVIEAISKLA-----KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVR 264
               +I+A  KL      +    EP V D    + LE+E    I E L+   F   K  R
Sbjct: 180 AVGELIKAQQKLLADLGIEQVFPEPQVQDPALPAFLEQECGAGIGEVLK--QFSLTKAER 237

Query: 265 CKQID----DLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318
             Q+D    D+ +K+      +    +     + + ++ I  K++R  +L +  R+DGR+
Sbjct: 238 DAQLDVIKADVAQKIAGLSDDDPIRVAAAGKALGNTYKGITKKLMRAQILSEGKRVDGRN 297

Query: 319 SETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
            + VR ISA VG+L +R HGS LF RG TQ +   TLGT  D Q +D L+      ++ H
Sbjct: 298 LDEVRPISAAVGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPMGEKTYLHH 357

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           YNF P + GE   M +P RRE+GHG LA RAI PVLP    FPY LR+VSE   S+GS+S
Sbjct: 358 YNFPPYSVGETRPMRSPGRREVGHGALAERAIVPVLPPKESFPYVLRVVSECLSSNGSTS 417

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           M +VCGS+LALMDAGVP+  PV+G AMGL+K+GD+  IL+DI G ED LG MDFKVAGT+
Sbjct: 418 MGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVAGTE 477

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            GITA+QMDMKI G++ + +  A+ QA+  RLHIL +M + + + R  L    PR+    
Sbjct: 478 KGITALQMDMKISGLAVSTIAEAVNQARPARLHILEKMLEAIGKPRNVLSPHAPRLLSFR 537

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P+ I  VIG GG+ I+GI E+T  K++I+D G V IAS   A  E A+ +I  +T   
Sbjct: 538 IDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQRIIEGLTRRV 597

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
              +++ G V +++  GAFV     ++G++HISQLS  RV K  DV+K GD V V++ + 
Sbjct: 598 SEGEMFNGSVTRIIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVIKVGDAVTVRVREI 657

Query: 678 DDRGKIKLSMKVVDQNT 694
           D+RG+I L+++ V Q T
Sbjct: 658 DNRGRINLTLRGVAQET 674


>gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
 gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
          Length = 669

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/660 (41%), Positives = 412/660 (62%), Gaps = 11/660 (1%)

Query: 41  LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100
           + T V    LK+ QDF PL V Y+E+  A G+ PGGY R+E RPT+ EIL SRMIDR +R
Sbjct: 1   MVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLR 60

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF K Y  ETQ++  ++  D ++ P V+++  ASAALM+S +PF GPV   ++  I+G+
Sbjct: 61  PLFPKGYFYETQILGTLLSADGQNDPDVMAINGASAALMVSDIPFYGPVGAVRIGQIDGR 120

Query: 161 YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +++NP   E + S +DL   G++   LM+E  A +  E+  + A+ F H   + VI A  
Sbjct: 121 WIINPTHREREISDIDLVYVGSEHYPLMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQK 180

Query: 220 KLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
           +LA+   K     V+  ++ + +   ++++    L+ + +   K  R K++  LK+++ +
Sbjct: 181 ELAEKVGKPKRSCVLFEENLA-ITNRLAELYSSQLQDALYTSSKTERQKKLAKLKEELTA 239

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               E  +    EI S ++ +Q  + RT +L+ K R DGR  E +R I+ +  ++ R+HG
Sbjct: 240 KILEEFPTATPREITSSYDSLQKTIFRTNVLETKRRCDGRGPEDIRPIAIETSVVPRSHG 299

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           SSLF RG+TQA+ + TL +  + Q +D+  G  Q   F++HY F P + GEV R+   SR
Sbjct: 300 SSLFCRGETQALCMATLASLNEAQELDAYGGGEQSKRFLLHYFFPPFSVGEVGRITGQSR 359

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA R++ PV+P    FPY +R+ SEI ES+GS+SMATVCG SLALMDAGVP+ 
Sbjct: 360 REIGHGALAERSLLPVIPSETDFPYAIRVSSEILESNGSTSMATVCGGSLALMDAGVPLK 419

Query: 457 KPVAGIAMGLVK------DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
             VAGI++GLVK      D   + +L+DI G EDH G MDFK+AGT  GIT  Q+D+K+ 
Sbjct: 420 TSVAGISVGLVKGKEEDFDWSRYCLLTDILGLEDHYGDMDFKIAGTRKGITGFQLDLKLR 479

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI  ++M  A+ Q+++ R+ IL+ M KV++  R ++ +  PR+E + I PD+I  +IG G
Sbjct: 480 GIPLDVMAKAIFQSQKARMVILDCMDKVINAPRAEISKHAPRIEKIKIHPDKIGLLIGPG 539

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           GK I+ I  ++GA++ I+DDGTV I SSS   +EAAREMI  +     V  IY+ +VV V
Sbjct: 540 GKTIKKISAESGAEITIEDDGTVMIYSSSADSLEAAREMIEDMVGEVTVGGIYRSKVVSV 599

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DFG F+   G  +GLVHIS+LS   V +   VV+ G+ +WVK +  D++G+ K S K  
Sbjct: 600 KDFGCFIEIKGKGEGLVHISELSDTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKAA 659


>gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9902]
 gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902]
          Length = 721

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 296/703 (42%), Positives = 422/703 (60%), Gaps = 18/703 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  I + GR ++L TGR A Q+ G+VL   G+T VL T    +  +DG DF PL  +Y+E
Sbjct: 5   TQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSKG-RDGIDFLPLICDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA G+IPG Y+RRE+RP E   L  R+IDR +RPLF    +++ QV+   +  D    
Sbjct: 64  RLYAAGRIPGSYMRREARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D 
Sbjct: 124 SDVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTADG 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFSK 239
           V+MVE  ANQL E  V++AI FG+   + +I+A   L K         E    D+   + 
Sbjct: 184 VVMVEAGANQLPEGDVIEAIDFGYEAIQELIKAQETLLKDLGIKQVKPEAPKEDTTVPAY 243

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEI 291
           LE++ ++ I   L  S F   K  R   ++ +K       ++        +  S +   +
Sbjct: 244 LEKQCTKAISAVL--SKFEQSKEDRDNGLEAVKADAAEAIAALKEDDAVRQAVSSSSKLL 301

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIV 350
            + F+ +  K++R  +L    R+DGR  + VR ISA  G+L +R HGS LF RG TQ + 
Sbjct: 302 GNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLS 361

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
             TLGT  D Q +D L       ++ HYNF P + GE   M +P RREIGHG LA RAI 
Sbjct: 362 TATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAIL 421

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+G
Sbjct: 422 PVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEG 481

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            D  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+   +M  A+ QA+  RLH
Sbjct: 482 KDIKILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKVMAEAVNQARPARLH 541

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D 
Sbjct: 542 ILEKMLEAIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDS 601

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HIS
Sbjct: 602 GIVTIASHDGAAAEEAQKIIEGLTRKVNEGEMFSGSITRIIPIGAFVEILPGKEGMIHIS 661

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           QLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 662 QLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|197294708|ref|YP_001799249.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
           australiense]
 gi|226702674|sp|B1VAN5|PNP_PHYAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171854035|emb|CAM12008.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
           australiense]
          Length = 710

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 287/697 (41%), Positives = 424/697 (60%), Gaps = 38/697 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D +VL  + +TVVL T V+    K+  DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDPSVLIRFQDTVVLTTTVFSNK-KNNFDFLPLTVIYQEKFYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE R T++EIL SR+IDRS+RPLF K ++ E QVI  V+  + +    + S++ +S
Sbjct: 74  SFLRREGRSTDHEILSSRLIDRSLRPLFPKEFRQEIQVINTVLSSNPDFKSEIASILGSS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            +L++S +PF  PV G  V YI  Q+V+NP   +   S L L V+GT+  V+M+E  A++
Sbjct: 134 LSLLISEIPFFEPVAGVYVAYIQNQFVINPNAQQLTNSPLHLLVAGTKKNVVMIEAHASE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIKEDLR 253
           +SE++ L+AI+F H   K +      + K   +   +ID   +   LE+E ++   E  R
Sbjct: 194 VSEEMFLEAIVFAHEYIKKLCLFQEDVQKKVGQTKKLIDLDAELQSLEKEFNEQYHEQTR 253

Query: 254 VSCFIPEKYVRCKQIDDL---KKKM---------------VSYFSSEHSSWNEGEIVSVF 295
               +        Q +DL   KKK+               +++F  E        I ++F
Sbjct: 254 T---LVANVFEQDQKNDLQVFKKKILAKAQQKAFVKTIDQITFFDVEEQKNYLLLIENLF 310

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +  + +R  ++  K R D R  E VR++ +Q+ LL R HGS+LF RG TQ++ VVTLG
Sbjct: 311 QKLFNQEMRNYIIKNKKRPDKRTLEEVRNLDSQIDLLPRPHGSALFTRGQTQSLAVVTLG 370

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  + + +D LSG     FM+HYNF P A G + R  APSRREIGHG LA +AI P+LP+
Sbjct: 371 TLSESKIIDDLSGESNKRFMLHYNFPPFAVGSIGRYAAPSRREIGHGNLAEKAILPLLPE 430

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDF 473
              FPY +R+VSEI ES+GSSS ATVC +S++LM AGVP+ + V+GIAMGL  D   +++
Sbjct: 431 ENDFPYAIRVVSEILESNGSSSQATVCATSMSLMAAGVPLKRAVSGIAMGLFMDSKTNEY 490

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +ILSDI G EDH+G MD K+AG+D GITA+QMD+KI GIS+ I+  A  QAK+GRLHIL 
Sbjct: 491 VILSDIQGLEDHIGDMDLKIAGSDKGITALQMDLKIEGISQAILKQAFFQAKKGRLHILE 550

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGT 592
            M+K ++  R ++ ++ P+V++  I P++IR+VIG  GK+I  I+E   G K++I+ DG 
Sbjct: 551 HMNKTIASPRKEMSQYAPKVQMFQIKPEKIRDVIGSAGKIINQIIENHDGVKIDIEQDGR 610

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGL 646
           + +  S+L  ++ A   I+++    EVN IY   + + ++       GAF     + +GL
Sbjct: 611 IFVMHSNLETVKQAILFIKNLIQDAEVNSIYHAHISRFLNDKAGNILGAFAQVSPSIEGL 670

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +  S     +  K +DVVK GD V VK +  ++RG+I
Sbjct: 671 IRFS-----KAKKENDVVKIGDKVLVKCVKINERGRI 702


>gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
          Length = 737

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/701 (40%), Positives = 439/701 (62%), Gaps = 21/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M D    E E+ GR + +E G++A+QS GA    + ++ +LATV           F PLT
Sbjct: 1   MNDYRVWEREFFGRKIIVEHGKMAKQSHGACFVRFADSAILATVNASEEPLPQAGFVPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +QE+ YA GKIPGG+++RE +P+EN IL +R+IDR IRPLF K   NE QVI+ V+  
Sbjct: 61  VEFQEKFYAAGKIPGGFVKREGKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P  + + A+S AL +S +PF+G V G +V Y++G+Y+  P  +E ++  LD+ V+
Sbjct: 121 DPDNPPDTIGIFASSLALNISPIPFDGMVAGVRVGYVDGEYIFFPTSEELEKSELDIVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA--------KMCAKEPIV 231
           GT++AV MVE EA ++SE+V+L A++  H   K ++E   ++         ++   EP  
Sbjct: 181 GTKEAVTMVEGEAKEVSEEVMLKALMKAHEAIKQLVEFQEEIVSEFEVQKWELEVPEPPE 240

Query: 232 IDSKDFSKL---EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              + F  L   +E + +M+    +      ++Y R   I+++K+K    +S +    NE
Sbjct: 241 GFIEAFESLLDDQEIIERMLTPGKKNKGRALKEY-RNAIIEEMKEKFTDKWSEDEFVENE 299

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             +   +E+    ++R  ++++ +RMDGR +  +R I+ ++ +L RTHGS+LF RG+TQ+
Sbjct: 300 HFLKEHYEEKVKHLMRRSIVERNLRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQS 359

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLG   DEQ +D+L       FM+HYNF P +TGEV RM  P RREIGHG LA RA
Sbjct: 360 LATVTLGAPIDEQIIDTLLEEGSKTFMLHYNFPPFSTGEVKRMRGPGRREIGHGHLAERA 419

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  ++P   +FPYT+R+VSEI ES+GSSSMATVC  SLALM AGVPI + VAG+AMGL++
Sbjct: 420 LKNMIPPEEEFPYTIRVVSEILESNGSSSMATVCSGSLALMAAGVPIKRHVAGVAMGLIQ 479

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + D+ +IL+DI G+EDH G MDFKVAGT  GITA QMD+K+ G+SE IM+ AL QAK  R
Sbjct: 480 EPDETVILTDILGNEDHYGDMDFKVAGTRDGITAFQMDVKVAGVSEEIMLKALYQAKEAR 539

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           + IL+ M + +SE R ++  + P +++MA+P ++I  +IG GGKV++ +     A++ ID
Sbjct: 540 MKILDLMYETISEPRKEISPYAPVIKVMAVPYEKIGEIIGPGGKVVKKLSTDYDARIFID 599

Query: 589 D-DGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D    VKI  +   ++E    +I + I+DV E  +++ G + ++  +G FV     + GL
Sbjct: 600 DVKCQVKIIGNDPEKVEKLMGVINAVISDVKE-GQVFDGVISRIEPYGIFVEIAPGKTGL 658

Query: 647 VHISQLS--TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +H S+     +   KT++V   G  + V++   D+ G+I+L
Sbjct: 659 LHSSKFGGDMKEFIKTNNV---GAHLKVEVTAIDNLGRIQL 696


>gi|167758075|ref|ZP_02430202.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
 gi|167663972|gb|EDS08102.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
          Length = 695

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/694 (40%), Positives = 421/694 (60%), Gaps = 17/694 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y ER 
Sbjct: 6   EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   V+  D + SP 
Sbjct: 66  YSVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ A+ A  +S +PF+GP+   QV  ++ ++V NP   + + S L L V+ T++ V+
Sbjct: 126 LTAMLGAAIATTISDIPFDGPISTTQVGIVDDEFVFNPTAAQKEASDLALTVASTKEKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ E  ++DAI   H   + VI  I  +   C K     +S     + EE+  
Sbjct: 186 MIEAGANEVPEQKMIDAIFAAHELNQKVIAFIETIVAECGKPKHAYES---CAVPEELFA 242

Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300
            I E     ++  + F  +K  R + I  +  K+   F+ +    N  GE V  +   Q 
Sbjct: 243 AITEIVPPSEMEEAVFTDDKQTREENIRVITAKLEEAFADKEEWLNVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L  + R DGR  + +R ++A++ L+ R HGS++F RG TQ   + TL    + 
Sbjct: 300 KTVRKMILKDQKRPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLAEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+F
Sbjct: 360 QRLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPNEAEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILS 477
           PY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+++L+
Sbjct: 420 PYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDSDDDYLVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E MS
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVMS 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++E R ++G++ P++  M I P +I +V+G  GK I  I++QTG K++I DDG V I 
Sbjct: 540 KTIAEPRPEVGQYAPKIIQMQIDPQKIGDVVGQRGKTINAIIDQTGVKIDITDDGAVSIC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    +E A+ +++ I    E  ++ +G+VV + +FGAF+ F   ++G+VHIS++S ER
Sbjct: 600 GTDANSMEEAKRLVQIIVTDFEAGQVLEGKVVSIKEFGAFLEFAPGKEGMVHISKISKER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +    DV+  GD V V  L  D  G++  SMK V
Sbjct: 660 INHVEDVLTLGDVVKVVCLGKDKMGRLSFSMKDV 693


>gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9312]
 gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312]
          Length = 721

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/702 (40%), Positives = 430/702 (61%), Gaps = 18/702 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L TG  A Q++G+V+   G+T +L T     + K+  DF PL  +Y+E+ Y
Sbjct: 8   ITFDGREIRLTTGLYAPQANGSVMIECGDTSLLVTAT-KTTKKEVADFLPLICDYEEKLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG++RRE RP E   LISR+IDR +RPLF    ++E Q++ + +  D      V
Sbjct: 67  AAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G+ D ++M
Sbjct: 127 LAVTGASIATLLGEIPFHGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPDGIVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFSKLEE 242
           +E  ANQLSE   ++AI FG+     +I++   L K    + +       D+   S LE+
Sbjct: 187 IEAGANQLSEQDTIEAIDFGYESVTELIKSQVDLLKDLGIKQVKSSAPEEDNTLPSYLEK 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGEIVSV 294
             ++ I  +L +  F   K  R  +++ +K    +   S           S N+  + S 
Sbjct: 247 NCTKGI--ELVLKKFDQSKDERDLELEKIKVDTQAKIESLKDDNELKVLLSENDKLLSSD 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R+ +++   R+DGR+ + VR ISA  G+L +R HGS+LF RG TQ +   T
Sbjct: 305 FKKLTKKLMRSQIINDGKRVDGRELDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA RAI PVL
Sbjct: 365 LGTPSDAQEMDDLNPSTEKTYLHHYNFPPFSVGETRPMRTPGRREIGHGALAERAIIPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+   V+G AMGL+K+G + 
Sbjct: 425 PGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKALVSGTAMGLIKEGKEI 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+S +++  A+++A+  RLHIL 
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLSVSVISDAIKKARPARLHILE 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G V
Sbjct: 545 KMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+VHISQLS
Sbjct: 605 TIASHDGAAAEEAQKIIEGLTRKVHEGEIFTGVVTRIIPIGAFVEILPGKEGMVHISQLS 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             RV +  DVV++GD V V++ + D RG+I L+++ V QN+G
Sbjct: 665 EARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVSQNSG 706


>gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
 gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
          Length = 721

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 297/703 (42%), Positives = 425/703 (60%), Gaps = 18/703 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T       +DG DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG-RDGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y+RRESRP E   L +R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYMRRESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A  +L K         E    DS   +
Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGITQVKPEQPDEDSTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGE 290
            LE++ ++ I   L  S F   K  R   ++ +K ++   ++    +H+     + +   
Sbjct: 243 YLEKQCTKAISAVL--SKFDQSKDERDTALETVKGEVSETIAGLKEDHAVRQALASSPKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  +L    R+DGR  + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L       ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+S   +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLSVKTVAEAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDTPRDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQ 703


>gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 722

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/711 (40%), Positives = 430/711 (60%), Gaps = 32/711 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR ++L TGR A Q+ G+VL   G+T VL T    +  ++G DF PL+ +Y+
Sbjct: 4   QTTSVSFDGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQGQG-REGADFLPLSCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              ++++  +S A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADILAVTGSSMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSFREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLE 241
            V+MVE  +NQL+E  V++AI FG+       EA+++L K  A+E I+ DS        +
Sbjct: 183 GVVMVEAGSNQLTEQDVIEAIDFGY-------EAVNELIK--AQESILKDSGLTQIKPEK 233

Query: 242 EEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSS-------EHS 284
            ++ + +   L  +C  P           K  R  ++D++K        S       + S
Sbjct: 234 PDLDETVPSYLEKNCTKPISALLKEFDLSKEDRDLKLDEIKTNCAEKIDSLKDDNAVKKS 293

Query: 285 SWNEGEIVSV-FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFI 342
                +++ + F+ +  K++R  ++    R+DGR  + VR+ISA+ G+L +R HGS LF 
Sbjct: 294 ITTNTKLLGISFKALTKKLMREQIIKDGKRVDGRALDEVREISAEAGILPKRVHGSGLFQ 353

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG TQ +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RRE+GHG
Sbjct: 354 RGLTQVLSTATLGTPSDAQEMDDLNPSPDKTYIHHYNFPPYSVGETRPMRTPGRREVGHG 413

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS++AL+DAGVP+  PV+G 
Sbjct: 414 ALAERAIIPVLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGA 473

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G++  IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+   I+  A+ 
Sbjct: 474 AMGLIKEGEEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKMTGLPIKIIGEAIN 533

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QAK  R HIL +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T 
Sbjct: 534 QAKPARTHILEKMVQAIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTN 593

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K++I+D G V IAS      E A+++I  +T      +++ G + +++  GAFV     
Sbjct: 594 TKIDIEDGGIVTIASHDGVAAEEAQKIIEGLTRKVHEGEVFTGSITRIIPIGAFVEILPG 653

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           ++G++HISQLS  RV K  DVVK GD V V++ + D+RG+I L+++ + QN
Sbjct: 654 KEGMIHISQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGIPQN 704


>gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
           4252]
 gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
           4252]
          Length = 772

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 293/708 (41%), Positives = 437/708 (61%), Gaps = 33/708 (4%)

Query: 8   EIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           EIE+A G+ L+LETGR+A+Q++GAV+   G+T+VL T V     ++GQ FFPLTV Y+E+
Sbjct: 9   EIEFAPGKSLRLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPLTVEYREK 68

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IPGG+++RE RPT+ EIL SR+IDR+IRPLF   + +E Q+I  V+  D     
Sbjct: 69  FAAGGRIPGGFIKREGRPTDKEILSSRLIDRAIRPLFPDGFFHEVQIICYVISADDRYDA 128

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V++   ASAAL+L+G PF+GP+   +V  ++GQ+V+NP L E +Q  ++L V+G +DA+
Sbjct: 129 DVLAGTGASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDINLVVAGKEDAI 188

Query: 186 LMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +MVE E  ++SE+ +L+A+   H      C+  +E ++   +    EP    +   + L 
Sbjct: 189 VMVEGEMKEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAHGR---PEPFPYQT---TTLP 242

Query: 242 EEMSQMIKE----DLRVSCFIP-EKYVRCKQIDDLKKKMVSYF-------------SSEH 283
           EE+   ++E     L      P +K    + ++ + ++ V+                +  
Sbjct: 243 EELVARVRELAVPKLEAHLRAPYDKQTFYEGLEQIGEETVAALLGTTDAEGNQVLAEATP 302

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
             W   +I      +  +V+R ++L +  R+DGR  + +R I  +VG L R HGS++F R
Sbjct: 303 EGWTADQIRKAVSQVTREVMRQMILREGRRIDGRSLDEIRPIWMEVGYLPRVHGSAIFTR 362

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ +  VTLGT +D Q +D +       F +HY F P  TGE+  +  P RREIGHG 
Sbjct: 363 GETQVLASVTLGTSKDVQMIDQIFVQGDKRFFLHYEFPPFCTGEIRFLRGPGRREIGHGY 422

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+  +LP  + FPYT+R+ +++ ES+GSSSMA+VC  SLALMDAGVP+ K VAG+A
Sbjct: 423 LAERALAAMLPDESSFPYTIRVNADVLESNGSSSMASVCAGSLALMDAGVPVKKHVAGVA 482

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           MGL+K+GD   IL+DI G EDHLG MDFKVAGT  GITA QMD+KIGG++  IM  AL+Q
Sbjct: 483 MGLIKEGDQVAILTDILGTEDHLGDMDFKVAGTRDGITACQMDIKIGGLTREIMQRALEQ 542

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+R R++IL+ M + +   R +L  + PR+  + I P+ I  VIG GG+V++GI  +T  
Sbjct: 543 ARRARMYILDLMEQTIEAPRPELSPYAPRLTQITIDPEFIGAVIGPGGRVVQGIQRETNT 602

Query: 584 KVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            + I++    G V +A+++    + A EMI+ I  VPEV   Y+G V  +  FGA V   
Sbjct: 603 TIEIEERDGVGVVTVAATNQENAQRAIEMIKQIVAVPEVGAEYEGIVRSIQSFGAIVEIM 662

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             ++GL+HIS+L    V    D +K GD V VKL++  + GK++LS K
Sbjct: 663 PGKEGLLHISELDHGYVRDIHDYLKVGDKVRVKLIEIREDGKLRLSRK 710


>gi|158313041|ref|YP_001505549.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. EAN1pec]
 gi|226702654|sp|A8L6G1|PNP_FRASN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158108446|gb|ABW10643.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EAN1pec]
          Length = 729

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 287/702 (40%), Positives = 430/702 (61%), Gaps = 33/702 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++ ETGR+ARQ+ GAV+A  G+T+VL+     RS K+  DFFPLTV+ +ER YA G+I
Sbjct: 19  RTVRFETGRLARQAAGAVVAHLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D ++   VV++ A
Sbjct: 79  PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAINA 138

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186
           ASA+ ML+GLPF GP+   +V Y++G ++  P   E ++ + D+ V+G      +  A++
Sbjct: 139 ASASTMLAGLPFSGPIGATRVGYVDGDWIAFPTHSELERATFDMVVAGRVLEDGSDVAIM 198

Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE----PI 230
           MVE EA   +  +V         + +  G    KP I     A S+LA   AK     P+
Sbjct: 199 MVEAEATPGTVALVAGGAPAPTEEVVAAGLEAAKPAIRELCRAQSELAAGAAKPQREFPL 258

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            ID  D   + E ++  + E+L  +  I  K  R  +++ ++   V   S +    ++ E
Sbjct: 259 FIDYHD--DVLETLTAAVGEELAAALRIAGKAERETELERVRALAVEKVSGQFEGRDK-E 315

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I   +  +  K+VR+ ++   VR+DGR +  +R++SA+V  + R HGS+LF RG+TQ + 
Sbjct: 316 ISPAYRALTKKLVRSRIVTDGVRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQILG 375

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA+ 
Sbjct: 376 VTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+++G
Sbjct: 436 PVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIREG 495

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA+  RL 
Sbjct: 496 DAFVTLTDILGAEDAYGDMDFKVAGTQEFVTALQLDTKLDGIPASVLAGALQQARAARLT 555

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M++ +     ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ ++DD
Sbjct: 556 ILEVMAEAIGGPD-EMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614

Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           GT+ I ++     E AR  I +I +  +PEV + Y G +VK+ +FGAFV     +DGL+H
Sbjct: 615 GTIYIGAADGPAAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGKDGLLH 674

Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +S+L      +RV K  DV+  G  + V++ + D RGKI L+
Sbjct: 675 VSKLKQLAGGKRVEKVEDVLSVGQKLQVEITEIDARGKISLA 716


>gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9605]
 gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 721

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 297/703 (42%), Positives = 425/703 (60%), Gaps = 18/703 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y+RRESRP E   L +R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYMRRESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A  +L K         E    DS   +
Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGITQVKPEKPDEDSTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGE 290
            LE++ S+ I   L  S F   K  R   ++ +K ++   ++    +H+     + +   
Sbjct: 243 YLEKQCSKAISAVL--SKFDQSKDERDTALETVKGEVSETIAGLKEDHAVRQALASSPKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  +L    R+DGR  + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L       ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+S   +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLSVKTVAEAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDTPRDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQ 703


>gi|291550238|emb|CBL26500.1| polyribonucleotide nucleotidyltransferase [Ruminococcus torques
           L2-14]
          Length = 695

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/694 (40%), Positives = 427/694 (61%), Gaps = 17/694 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y ER 
Sbjct: 6   EMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPREGIDFFPLSVEYNERM 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   V+  D + SP 
Sbjct: 66  YAVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   + + S L L V+ T++ V+
Sbjct: 126 LTAMLGAALATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVASTKEKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  A ++ E  +++AI   H+  + VI     +   C K     + + F+ + +E+  
Sbjct: 186 MIEAGAKEVPEAKMIEAIFAAHDLNQKVIAFFDTIVAECGKPK--HEYQSFA-VPQELFD 242

Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQA 300
            I+E     ++  + F  +K  R + I  + +++   F+ +E      GE V  +   Q 
Sbjct: 243 AIQEIVPAAEMEEAVFTDDKQTREENIRVITERLEEAFADNEEYLAKLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR  + +R ++A+V L+ R HGS++F RG TQ   + TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICTMTTLAPLSEA 359

Query: 361 QYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   ++   +M HYNF   + GE      P RREIGHG LA RA+ PVLP  ++F
Sbjct: 360 QKLDGLDEAEKTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSESEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV  +  DD+++L+
Sbjct: 420 PYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYLVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +I++E MS
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVMS 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++E R ++GEF P++  M I P +I +V+G  GK I  I+++TG K++IDD+G V I 
Sbjct: 540 KAIAEPRKEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIDETGVKIDIDDEGNVSIC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    +E A + I++I    E  ++++G+V+ + +FGAFV F   ++G+VHIS+LS +R
Sbjct: 600 GTEKENMEKAAKYIQTIVTDYEAGQLFEGKVISIKEFGAFVEFAPGKEGMVHISKLSKQR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K  DVV  GD V V  L  D  G+   SMK V
Sbjct: 660 VDKVEDVVSIGDVVKVVCLGKDKMGRFSFSMKDV 693


>gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 710

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/699 (40%), Positives = 431/699 (61%), Gaps = 33/699 (4%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +ETG+IARQ+DGA +     T++LATVV  + +K+  +F PLTV+Y+E+  A GKIP
Sbjct: 16  PIVIETGKIARQADGAAIVRAKNTILLATVVVSKEIKNEINFLPLTVDYREKYSASGKIP 75

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+++RE RP++ EIL  R++DR +RP FS+ ++NE Q++I+++ +D    P  ++ +AA
Sbjct: 76  GGFIKREGRPSDEEILTMRLVDRVLRPTFSESFRNEIQIMISLLSYDKTVLPDELAGLAA 135

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           S AL ++G+PF GP+   ++  +NG++++NP LD+ ++  +DL V  ++ +++M+E E  
Sbjct: 136 STALSVAGIPFNGPISEIRIIRVNGKFIINPSLDQLEKADIDLIVGASEHSIIMIEGEMK 195

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253
           +++E   L AI   HN  KP IEA  KL K   K        DF +   E   + KE L 
Sbjct: 196 EITEKEFLKAINIAHNAIKPQIEAQKKLVKKIQKNRFF----DFKENNRENPSLEKEFLE 251

Query: 254 VSCF-------------IPEKYVRCKQ----IDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              F             + +K  R  Q    +++ KKK+    S E    NE  I   +E
Sbjct: 252 KELFSFSYEKIYGMYKDLLDKKTRSIQEKTILNNFKKKL----SIEEREKNEIFIDQYYE 307

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+ +VVR ++L++ +R+DGR S+ +R I + V  L   HGS+LF RG+TQ++  VTLG+
Sbjct: 308 EIKKRVVRHMILEEGIRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGS 367

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D   +D++    +  F +HYNF P +TGE+  +   SRREIGHG LA+RA+  V+P  
Sbjct: 368 SLDANKIDNVIMENQEKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQRALKNVIPDN 427

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
              PYT+R+VS+I ES+GSSSMATVC +SLALMDAG+ I  PV+GI+MGL  D +  +IL
Sbjct: 428 N--PYTIRVVSDILESNGSSSMATVCAASLALMDAGIAIENPVSGISMGLFTDKEKKVIL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKRGRLHILNEM 535
           SDI G+ED  G +DFK+ GT +GITA QMD+ KI G++ +++   L QA  GRL IL +M
Sbjct: 486 SDIMGEEDGFGELDFKITGTKNGITACQMDVKKIQGLTNDLLSQILMQALEGRLFILKKM 545

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGT 592
            + L + R +     P++    IP D I  VIG GGKVI+ I   T   + I+   D G 
Sbjct: 546 LETLPKYRNKQKPNAPKIYTFNIPKDFIGAVIGPGGKVIQEIQSCTDTSILIEEKGDMGA 605

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           ++I      +++ A   I+ IT VPE+ KIYK +V  + DFGAFV      +GL+HIS++
Sbjct: 606 IEIIGKDYQKMKQAINRIKEITFVPEIGKIYKAKVKSIKDFGAFVEISKGVEGLLHISEI 665

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
             +R+    + +  GD + VK +  D++  K+KLS KV+
Sbjct: 666 GWKRLNNIEEELNIGDIIEVKFMGIDEKNKKMKLSRKVL 704


>gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9313]
 gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 723

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/706 (41%), Positives = 421/706 (59%), Gaps = 20/706 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTG-REGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+ +PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVID--SKD 236
            V+MVE  ANQL +  V++AI FG+     +I+A   + K         EP   D  +K 
Sbjct: 183 GVVMVEAGANQLPQGDVIEAIDFGYEAVCELIKAQQTILKDAGIKQVQPEPPTQDQDTKL 242

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNE 288
            + LE+  S+ I E L+   F   K  R  ++D +K K      S        +  + N 
Sbjct: 243 STYLEKNCSKSIGEVLK--QFEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANS 300

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQ 347
             + + F+ +  K++R  ++ +  R+DGR  + VR IS+  G+L +R HGS LF RG TQ
Sbjct: 301 KVLSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQ 360

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            +   TLGT  D Q +D L+      ++ HYNF P + GE   M +P RRE+GHG LA R
Sbjct: 361 VLSTATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAER 420

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+
Sbjct: 421 AIIPVLPPKDSFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLI 480

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+  +  IL+DI G ED LG MDFKVAGT  GITA+QMDMKI G+    +  A+ QA+  
Sbjct: 481 KEDAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPA 540

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I
Sbjct: 541 RIHILEKMLEAIDAPRTTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDI 600

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D G V IAS   A  EAA+ +I  +T      +++ G + +++  GAFV     ++G++
Sbjct: 601 EDGGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFTGTITRIIPIGAFVEILPGKEGMI 660

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           HISQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 HISQLSEARVEKVDDVVKVGDQVTVRIREIDNRGRINLTLRGVPQN 706


>gi|225439207|ref|XP_002270169.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 946

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/759 (39%), Positives = 445/759 (58%), Gaps = 72/759 (9%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG I RQ+ G+V  T GET+V  +V       +  DFFPL+VNYQE
Sbjct: 79  SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQE 138

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 139 RFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 198

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P  +++ AA  A+ LS LP    V G +V  +  ++++NP   E + S LDL V+GT  A
Sbjct: 199 PDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLLVAGTDSA 258

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS------KDFS 238
           +LM+E   N L E+ +L A+  G +  + +   +  LAK   K P ++D+      + + 
Sbjct: 259 ILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGK-PKMLDAIKLPPPELYR 317

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------------- 282
            +EE   Q + + L++   IP    R K +  L++++++  + E                
Sbjct: 318 HVEEIAGQQLGKVLQIRNKIP----RRKALISLEEEVLTILTEEGYVSKDETLGTAETIQ 373

Query: 283 ------------------------------HSS---WNEGEIVSVFEDIQAKVVRTVMLD 309
                                          SS   ++E ++  VF+++ +K +R  +++
Sbjct: 374 DLFEDEDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRIVE 433

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R DGR  + +R I++Q GLL R HGS+LF RG+TQ++ VVTLG R+  Q +D+L   
Sbjct: 434 GGKRSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDV 493

Query: 370 -QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +   F + Y+F P   GEV RMGAPSRREIGHG LA RA+ P+LP    FPYT+R+ S 
Sbjct: 494 DELKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVEST 553

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGD 482
           ITES+GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V + ++F      +ILSDI+G 
Sbjct: 554 ITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDITGS 613

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED  G MDFKVAGT+ GITA QMD+K+GGI+  IM  AL QAK GR  IL EMSK     
Sbjct: 614 EDASGDMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSPLP 673

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLA 601
             +L ++ P + IM + P++I  +IG GGK ++ I+E+TG + ++  DDG VKI +  L 
Sbjct: 674 AKRLSKYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLT 733

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            +E ++ +I S+T VP V  IY+   +K +  +G FV     R+GL HIS+LS   +AKT
Sbjct: 734 SLEKSKTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLAKT 793

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            D  K GD + VKL++ +D+G+++LS K +  + N  KP
Sbjct: 794 EDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKP 832


>gi|198274276|ref|ZP_03206808.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
 gi|198272951|gb|EDY97220.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
          Length = 727

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/709 (41%), Positives = 436/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELN-DGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  REKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  +  ++  +D+ V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDIMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E  ++SE  +L+A+ F H      CK  +E + ++ K   +E          
Sbjct: 185 ENIMMVEGEMKEVSEQDLLEAMKFAHEAIKVHCKAQMELMEEVGKTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +  +C+             K+ R    D + ++  + FS E      
Sbjct: 235 YCHEENDEDLRKAVHDACYEKAYAVAKSGNKNKHERGDAFDAICEEFKAQFSEEELEEKG 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGSS+F RG+TQ+
Sbjct: 295 PMIDRYYHDVEKEAMRRCILDEGKRLDGRATTEIRPIWCETSPLPGPHGSSIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKMDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGVPI KPV+GIAMGL+K
Sbjct: 415 LKGQIP--ADYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K  G++ +I+  AL QAK+
Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKCDGLTYDILEKALMQAKQ 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL ++++ ++E R +L    PR+E + IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILGKLTECIAEPRAELKPHAPRIETLTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I   D  G ++IA ++   I+ A  MI++I  VPEV ++Y G+V  +M +GAFV F   +
Sbjct: 593 IEEVDGAGRIEIAGTNKKCIDDAMRMIKAIVAVPEVGEVYTGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R     +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRFETIEETGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 701


>gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 703

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/678 (41%), Positives = 433/678 (63%), Gaps = 20/678 (2%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +E  + A Q+D ++L + G T VL TV        G DF PL+V+Y+ER++A GKIP
Sbjct: 12  PIYIEANKYAHQADSSILISQGGTKVLVTVCVSEEPLCGIDFAPLSVDYRERSFAWGKIP 71

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+++RE +PT+ E+LISR+IDR +RPL  K + NE  V    +  D +  P V+++  A
Sbjct: 72  GGFIKREGKPTDREVLISRVIDRPLRPLMPKGFLNEVVVTCLTLSADDKYDPDVLAITGA 131

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEAN 193
           SAAL+ S +PFEGP+ G +V  +NG++++NP  ++ + S +D+ ++ ++DA++MVE  A 
Sbjct: 132 SAALVSSSVPFEGPIAGMRVCRVNGEFIINPTYEQRKNSDMDIVMALSKDAIVMVEGGAK 191

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPI--VIDSKDFS-KLEEEMSQMI 248
           ++ E V+LDA+ FG  + + +I+A  +L       K+PI  +  S D + KL+E  S  I
Sbjct: 192 EVEESVLLDALFFGLEKGQTLIKAQEELVDSLKPEKKPIGHIGLSDDMANKLKEIASSKI 251

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
            E   +     +K  R K + D+  + +       S   E + +  F+D++++++R  +L
Sbjct: 252 LEAFSIE----DKKERSKALKDVYAQAMQKLGI--SKEQEFDFLVSFKDLESQLMREQIL 305

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-S 367
             K R+DGR    +R I+ ++  L+R HGS++F RG TQA+  VTL  +++ Q V+++  
Sbjct: 306 KYKKRIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLVETIFE 365

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G     FM+HYNF P +TGE    G P RREIGHG LA RA+ P+L +   FPY +R+VS
Sbjct: 366 GETFKRFMLHYNFPPFSTGEARPWGPPRRREIGHGALAERALEPLLAKEEDFPYIIRVVS 425

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           +I ES+GSSSMATVC  SLAL DAGVP+ K VAGIAMGL+KDGD+F+IL+DI GDEDHLG
Sbjct: 426 DILESNGSSSMATVCAGSLALFDAGVPMKKHVAGIAMGLIKDGDNFVILTDILGDEDHLG 485

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT  G+T++QMD+KI G+S++IM+ AL QAK  R+ IL+++ + + E   ++ 
Sbjct: 486 DMDFKVAGTRDGVTSVQMDIKIKGLSKDIMIKALNQAKEARMFILDKLYEAIPEPNKEVS 545

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           ++ P+ ++M IP D++  VIG  GK I+ I EQ GA V I D     I + ++  +  A 
Sbjct: 546 KYAPKAQVMKIPEDKVGLVIGPAGKNIKYIKEQFGASVWI-DGANAYINAPTIEAVNKAA 604

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I S+    EV  +Y+G+V++V ++G FV     + GL+H S + TE+       +  G
Sbjct: 605 DFINSLIQEVEVGGVYEGKVIRVENYGLFVEVLPGKVGLLHASAM-TEK-----PTINVG 658

Query: 668 DTVWVKLLDFDDRGKIKL 685
           DT+ VK++  D++ ++ L
Sbjct: 659 DTIKVKVMAIDEQNRLNL 676


>gi|294056196|ref|YP_003549854.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615529|gb|ADE55684.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 724

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 288/701 (41%), Positives = 428/701 (61%), Gaps = 20/701 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V ++  G  +++ TG +A  + GAV    GET +  +     +L+ GQDFFPLTV+Y+
Sbjct: 5   HNVTVDGLG--IEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLTVDYR 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+  A GK PGGY +RE +P+E EIL SR+ DR +RPLF K + NE QVI  ++  D   
Sbjct: 63  EKFSAGGKFPGGYFKREGKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLATDQTH 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P V+ + AASAA ++S +P+ GPV   +V  I+G++V NP  DE   S LDL   G++ 
Sbjct: 123 EPDVLMVNAASAATLISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLDLIYVGSET 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PIVIDSKDFSK 239
            ++M+E  A  +S++   +A+ +G    +P+I A  +LAK+  KE    P+V+   D ++
Sbjct: 183 EMMMIEGSAEFISDERFYEALEYGQQAIQPIIAAQKELAKLAGKEKKEFPLVLTPADVTE 242

Query: 240 L-EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
             E   ++ +KE L    +   K        D    +     +++   N  ++   F++I
Sbjct: 243 FCEAHAAEKVKEALGHDSYTERKLAIEAIAKDTTAALEEKLGADNVDGN--DVARAFDEI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K+ R  +L+   R+DGR ++ +R IS   G+L R HGS++F RG+TQA+V+ TLGT  
Sbjct: 301 QEKLYRQNILETGRRVDGRGAKDLRAISCDTGVLPRVHGSAVFNRGETQALVISTLGTSR 360

Query: 359 DEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           D Q +D L+ G     F++HYNF P +TGE  R G   RREIGHG LA R++ P+LP   
Sbjct: 361 DVQDIDGLTGGATSKSFILHYNFPPFSTGEAGRFGFTGRREIGHGALAERSLLPILPPED 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGD---- 471
           +FPY +R+VSE+  S+GS+SMA++CG  L+LMDAGVPI+ P AGI+ GLV  KD D    
Sbjct: 421 EFPYAIRVVSEVMSSNGSTSMASICGGCLSLMDAGVPITAPCAGISTGLVTEKDADGKIT 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             +IL+DI G EDH G MDFK+AGT  GIT  Q+D+KI G+  +I + A++Q +  R+ I
Sbjct: 481 KHVILTDILGAEDHFGDMDFKIAGTPEGITGFQLDLKIQGLPFDITLEAIKQNRDARMKI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           +  M++ L ESR  L E  PR+  + I P++I  +IG GGK IR I E +GA+++ID+D 
Sbjct: 541 IAIMAEHLPESRQDLREHAPRIHTIKIDPEKIGALIGPGGKNIRRITEVSGAQIDIDEDN 600

Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V + ++    ++ A + +   T   EV K Y+G V  + DFGAFV     ++GLVHI
Sbjct: 601 SGRVLVFATDKESMDRAIQEVELCTAEIEVGKTYRGIVRGIKDFGAFVECLPGKEGLVHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S+L+  RV KT D+ K GD + VK +   ++GK++LS K  
Sbjct: 661 SELADFRVNKTEDICKLGDEMVVKCIGM-EKGKVRLSRKAA 700


>gi|67921975|ref|ZP_00515491.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67856191|gb|EAM51434.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 715

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 296/695 (42%), Positives = 439/695 (63%), Gaps = 20/695 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ GAVL    +T VL T    +  ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKLGLLAPQAGGAVLIQSQDTAVLVTATTTKG-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILISR+IDR +RPLF   ++ + Q+I   +  D E  P V
Sbjct: 67  AAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRKDIQIIATTLSMDEEVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  +S A++ +G+PF GP+   +V  I   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGSSIAVIQAGIPFYGPMAAVRVGLIGDDFIINPTYREVENGDLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAK-EPIVIDSKDFSKLEE 242
           VE  AN L E  +++AI FG+   + +I A    + +L     K EP   +      +E+
Sbjct: 187 VEAGANTLPEQDIIEAIDFGYEAVRDLIGAQYDIMEELGMEIGKAEPPSTNEVLEKFIEK 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS--------- 293
           + +  IK+ L    +   K  R   +D++K+  +    SE S  +  ++ +         
Sbjct: 247 QAADSIKKVL--VQYDLSKADRDTALDNIKETAIEEAISELSEEDPIKVATTEDPKAVGN 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
           +++ +  K++R+ ++ + +R+DGR  + VR I+ +VGL+  R HGS+LF RG TQ   + 
Sbjct: 305 LYKGLTKKLMRSQIISEGIRVDGRKLDEVRPIACRVGLMPPRVHGSALFTRGLTQVFSLA 364

Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q + D L       ++ HYNF P + GE   + +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSMGETKPLRSPGRREIGHGALAERAILP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++G 
Sbjct: 425 VLPPQEEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIREGK 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G++ +I+  A+QQA   RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLTMDIVAKAIQQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M   +++ R  L  F PR+  M I P+QI  VIG GGK I+ I EQTG+K++I DDG
Sbjct: 545 LDKMLATIAQPRRDLSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+    + E AR++I ++T   +  ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIAAIQARKAEKARDLIFNMTRKLKEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV K  + V  GD V VK+ + D++G++ L+
Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLT 699


>gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107]
 gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107]
          Length = 721

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 302/714 (42%), Positives = 423/714 (59%), Gaps = 40/714 (5%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  I + GR ++L TGR A Q+ G+VL   G+T VL T     S +DG DF PL  +Y+E
Sbjct: 5   TQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRS-SGRDGIDFLPLICDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA G+IPG Y+RRE+RP E   L  R+IDR +RPLF    +++ QV+   +  D    
Sbjct: 64  RLYAAGRIPGSYMRREARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D 
Sbjct: 124 ADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTADG 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEA------------------------ISK 220
           V+MVE  ANQL E  V++AI FG+   + +I+A                         + 
Sbjct: 184 VVMVEAGANQLPEQDVIEAIDFGYEAIQELIKAQETLLKDLGIKQVKPEAPKEDTTVPAY 243

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           L K C K    + SK F + +EE    + E ++VS    E     K+ DD  ++ VS  S
Sbjct: 244 LEKQCTKAISAVLSK-FEQSKEERDNGL-EAVKVSAA--EAIAALKE-DDAVRQAVS--S 296

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSS 339
           S     N       F+ +  K++R  +L    R+DGR  + VR ISA  G+L +R HGS 
Sbjct: 297 SSKLLGNS------FKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSG 350

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG TQ +   TLGT  D Q +D L       ++ HYNF P + GE   M +P RREI
Sbjct: 351 LFQRGLTQVLSTATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREI 410

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RAI PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV
Sbjct: 411 GHGALAERAILPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPV 470

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +G AMGL+K+G D  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+   ++  
Sbjct: 471 SGAAMGLIKEGKDIKILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKVVAD 530

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           A+ QA+  RLHIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E
Sbjct: 531 AVNQARPARLHILEKMLEAIDTPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITE 590

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +T  K++I+D G V IAS   A  E A+++I  +T      +++ G + +++  GAFV  
Sbjct: 591 RTNTKIDIEDSGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEMFSGSITRIIPIGAFVEI 650

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              ++G++HISQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 651 LPGKEGMIHISQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|269215563|ref|ZP_06159417.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
           700122]
 gi|269131050|gb|EEZ62125.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
           700122]
          Length = 769

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 297/695 (42%), Positives = 424/695 (61%), Gaps = 26/695 (3%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           ++E E  G+    ETG +A+Q+ GAVL   GET VL T V  +  KD  DFFPLTV++ E
Sbjct: 35  SLEFELYGKSYAFETGELAKQATGAVLVRQGETTVLVTSVISKEEKD-YDFFPLTVDFME 93

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGGYL+RE R ++   L +RM+DR IRP F++ +K E  V+      D E++
Sbjct: 94  KMYAVGRIPGGYLKREGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAIDGENA 153

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           P  + +  ASAAL+++  PF+GPV   ++  +    ++++NP   E + S L+L ++GT+
Sbjct: 154 PDCMCVGGASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELTIAGTK 213

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE- 241
           D + MVE  A+Q+ E+ +L A+ FG        EAI   A  C K+   +   D  K E 
Sbjct: 214 DYISMVEAGADQVGEEDMLAAMNFGQ-------EAI---AAFCEKQAEFLSMVDIQKREW 263

Query: 242 ---------EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSEHSSWNEGEI 291
                     E      + +  +    +K  R  ++++LK  +    FS E  +    +I
Sbjct: 264 PIHVPDASIAERVNAHYDAMSAALKDADKQSRIAKVEELKASIKENDFSDEERAAWASDI 323

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +  + ++   +R ++++   R DGR  E +R +  + G L R HGS LF RG TQ + V
Sbjct: 324 AAACKALEKHAMRRMIIETGERADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSV 383

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG   + Q +D++       +M  YNF P  TGEV RMGAP RRE+GHG LA RAI P
Sbjct: 384 ATLGLLNEAQRLDTIDPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILP 443

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY++R+VSE+ ES+GSSSMA+ CGS LALMDAGVPI  PV+G+AMGL+K+ D
Sbjct: 444 VLPNEDEFPYSIRVVSEVLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDD 503

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             +ILSDI G ED LG MDFKV GT  GITA+QMD K  G+S  I+  AL QAK GR HI
Sbjct: 504 GVVILSDIQGLEDFLGDMDFKVTGTPEGITALQMDNKARGLSTEILGRALAQAKEGRAHI 563

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M   ++  R +L +  PR+E + IP ++IR VIG GG+ IRGI + TGA + I +DG
Sbjct: 564 LSAMLDEIAAPRAELRDTAPRIETIKIPVEKIREVIGKGGETIRGIQDATGASIEIQEDG 623

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+   A   AA + ++ I   PEV ++Y+G VV +  FGAFV     +DGL+HIS+
Sbjct: 624 TVHIAAVDQAAGAAAMQAVKDIVKEPEVGEVYEGTVVGIQSFGAFVKLTPNKDGLLHISR 683

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
           ++  RV +  DV+  GDTV V++++ D + GK+ L
Sbjct: 684 MANGRVGQVEDVLNLGDTVKVEVIEIDSKTGKVSL 718


>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 948

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 287/746 (38%), Positives = 443/746 (59%), Gaps = 62/746 (8%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I +  R + +ETG   RQ+ G+V+ T GET+V  TV  D    +  DFFPL+VNYQE
Sbjct: 92  SVKIPFGDRHILVETGHTGRQASGSVMVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQE 151

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 152 RFSAAGRTSGGFFKREGRAKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 211

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
              +++ AA  A+ LS +P    + G +V  +  ++++NP   E ++  LDL ++GT  A
Sbjct: 212 SDALAVTAAGIAVALSEVPTTKAIAGVRVGLVGDKFIVNPTTKEMEESKLDLVMAGTDSA 271

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242
           +LM+E   N L E+ +L+A+  G +  + +   +  L K C K P + D+      +L +
Sbjct: 272 ILMIEGYCNFLPEEKLLEAVQVGQDAVRAICNEVDALVKKCGK-PKMHDAIKLPPPELYK 330

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-----FSSEHSSWNEGEIVS---- 293
            + ++  ++L     I  K  R K +  L++K++S      F S+ +S+   E V+    
Sbjct: 331 HVKEIAGDELVNVLQIRNKIPRRKALSSLEEKVISILTEEGFVSKDTSFGTTETVADLLE 390

Query: 294 ----------------------------------------VFEDIQAKVVRTVMLDKKVR 313
                                                   VF+++ ++ +R  +++   R
Sbjct: 391 EEEEDEEFVVDGEVDEGDIHIKPVSRKSSPLLYSEVDVKLVFKEVTSQFLRRRIVEGGKR 450

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT-QRN 372
            DGR+++ +R I+++ GLL R HGS+LF RG+TQ++ V TLG ++  Q VD+L    +  
Sbjct: 451 SDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEFK 510

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            F + Y+F P + GEV RMGAPSRREIGHG LA RA+ P+LP  A FPYT+R+ S ITES
Sbjct: 511 RFYLQYSFPPSSVGEVGRMGAPSRREIGHGMLAERALEPILPSEADFPYTIRVESTITES 570

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486
           +GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V D ++F      +ILSDI+G ED  
Sbjct: 571 NGSSSMASVCGGCLALQDAGVPVKCSIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDAS 630

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAG + G+TA QMD+K+GGI+  +M  AL QA+ GR HIL EM K       +L
Sbjct: 631 GDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRRALLQARDGRKHILAEMLKCSPSPSKRL 690

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605
            +  P + +M + P ++  +IG GGK +R I+E+TG + ++ DDDGT+KI +  L+ +E 
Sbjct: 691 SKHAPLIHMMKVDPQKVNMIIGSGGKKVRSIIEETGVEAIDTDDDGTIKITAKDLSSLEK 750

Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ +I ++T VP V  IY+   +K +  +G FV     R+GL HIS+L++  +AK  D  
Sbjct: 751 SKSIISNLTMVPTVGDIYRNCEIKTIAPYGVFVEIAPGREGLCHISELTSSWLAKAEDAF 810

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD V VKL++ +++G++KLS K +
Sbjct: 811 KVGDRVDVKLIEVNEKGQLKLSRKAL 836


>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 922

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/751 (38%), Positives = 450/751 (59%), Gaps = 63/751 (8%)

Query: 2   FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           F  H +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL 
Sbjct: 84  FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 143

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +
Sbjct: 144 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 203

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D   +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++
Sbjct: 204 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 263

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  A+L +E  +N L E+++L+A+  G +  +    AI  LAK   K P ++D+     
Sbjct: 264 GTDTAILTIEGYSNFLPEEMLLEAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 322

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284
            +L + + ++  E+L  +  I  K  R K I  L++K+             V++ + E  
Sbjct: 323 PELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQ 382

Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308
                                                ++E ++  VF+++ +K++R  ++
Sbjct: 383 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 442

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G
Sbjct: 443 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 502

Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           + +   F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S
Sbjct: 503 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481
            + ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 622

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K    
Sbjct: 623 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 682

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600
             L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +
Sbjct: 683 PTLSLSKYAPLIHIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 742

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659
           A +E A+ +I  +T VP V  IY+   +K M  +GAFV     R+GL HIS+LS E +AK
Sbjct: 743 ASLERAKAIISGLTMVPAVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 802

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D  K GD + VKL++ +++G+++LS++ +
Sbjct: 803 PEDAYKVGDRIDVKLIEVNEKGQLRLSVRAL 833


>gi|225011625|ref|ZP_03702063.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           MS024-2A]
 gi|225004128|gb|EEG42100.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           MS024-2A]
          Length = 709

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/699 (41%), Positives = 431/699 (61%), Gaps = 18/699 (2%)

Query: 6   TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           T EI +  GR + +ETG++A+Q+DG+V+   G+ ++LAT V  R      DF PLTV+Y+
Sbjct: 7   TQEIRFEDGRTITIETGKLAKQADGSVVVRMGDCMLLATAVSARKASP-VDFLPLTVDYR 65

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+  A G+ PGG+ +RE+RP++NE+L  R++DR +RPLF K Y  ETQV+I +M HD   
Sbjct: 66  EKFAAAGRFPGGFFKREARPSDNEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENV 125

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P  ++ +AAS A+ LS +PFE P+   +V  ++G +++NP  ++ D   +D+ +  + D
Sbjct: 126 MPDALAGLAASTAIQLSDIPFEYPISEVRVARVDGMFIVNPSREQLDASDIDIMIGASAD 185

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI---DSKDFSKL 240
           +V MVE E +++SE+ +LDAI FGH   K  I+A   LA+   K+ +     + KD S  
Sbjct: 186 SVAMVEGEFDEISEEEMLDAISFGHEAIKDQIKAQIALAEAVGKKQVRTYEEEDKDDSLE 245

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED-IQ 299
           +E      ++   ++     K  R +Q  ++K+   + FS E     +GE++S + +  Q
Sbjct: 246 KEIHDATYQKYYDIAKKGLSKAERSEQFSEVKEASKTSFSEEDLE-EKGELISRYNNSAQ 304

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L++ +R+DGR +  +R I  +V  L  THGS+LF RG+TQA+   TLGT  +
Sbjct: 305 KKAVRDLVLEEGIRLDGRKTTDIRPIWCEVDYLPSTHGSALFTRGETQALATTTLGTSRE 364

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
              +DS S      F +HYNF P  TGE   +   SRRE+GHG LA+RA+  V+P     
Sbjct: 365 ANMIDSPSHQGEETFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKKVMPDDC-- 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIVSE+ ES+GSSSMATVC  ++ALMDAGV I KPV+GIAMGL+ DGD F +LSDI
Sbjct: 423 PYTVRIVSEVLESNGSSSMATVCAGTMALMDAGVKIKKPVSGIAMGLITDGDRFAVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+KI G+  +IM  AL QA+ GRLHIL+ + + +
Sbjct: 483 LGDEDHLGDMDFKVTGTADGITACQMDIKIKGLRFDIMTQALNQARDGRLHILDHLIETI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVK 594
           +     +    P++    +P + I  +IG GGKVI+ + + +G  + I++D     G ++
Sbjct: 543 ATPNEDVKAHAPKMITRRVPNEFIGAMIGPGGKVIQELQKVSGCTIVINEDPVTEEGIIE 602

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQL 652
           I  +S   I      I S+T  P V   Y+ +V+K++DFGA V +  A   + L+H+S+L
Sbjct: 603 ILGTSPEGIAMVEAKIDSVTFKPIVGNTYQVKVIKMLDFGAVVEYIDAPGNEVLLHVSEL 662

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           + ER     DVV  GDT+ VK    D R  K K+S K +
Sbjct: 663 AWERTENVGDVVSMGDTLEVKYFGIDSRTRKEKVSRKAL 701


>gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9311]
 gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           CC9311]
          Length = 721

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 293/704 (41%), Positives = 420/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T    +  +DG DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSKG-RDGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRESRP E   LI R+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRRESRPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+ +PF GP+   +V  +   +VLNP   E ++G LDL V+GT  
Sbjct: 123 PADVLAVTGASMATLLAKIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPQ 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239
            V+MVE  ANQL E  V++AI FG+     +I+A   + K    E ++ ++ +  K    
Sbjct: 183 GVVMVEAGANQLPEGDVIEAIDFGYEAVSELIKAQQSILKEAGIEQVIPEAPEQDKTLPV 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290
            LE+  S+ I E L    F   K  R +++D ++            S         N   
Sbjct: 243 YLEKACSKSIGEVL--GQFEQTKAERDEKLDAIRSTTAETIQGLKDSDPVRVAVSANGKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +   ++R  +L    R+DGR+ + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LPNSFKALTKTLMRQQILKDGKRVDGRNLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF   + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPSNEKTYLHHYNFPAYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 VPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED L  MDFKVAGTD GITA+QMDMKI G+  +I+  A+ QA+  RL
Sbjct: 481 GDEVKILTDIQGIEDFLVDMDFKVAGTDKGITALQMDMKITGLPVSIVADAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+ I E+T  K++I+D
Sbjct: 541 HILEKMMEAIESPREGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKNITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFTGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera]
          Length = 942

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/759 (39%), Positives = 445/759 (58%), Gaps = 72/759 (9%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG I RQ+ G+V  T GET+V  +V       +  DFFPL+VNYQE
Sbjct: 79  SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQE 138

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 139 RFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 198

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P  +++ AA  A+ LS LP    V G +V  +  ++++NP   E + S LDL V+GT  A
Sbjct: 199 PDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLLVAGTDSA 258

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS------KDFS 238
           +LM+E   N L E+ +L A+  G +  + +   +  LAK   K P ++D+      + + 
Sbjct: 259 ILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGK-PKMLDAIKLPPPELYR 317

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---------------- 282
            +EE   Q + + L++   IP    R K +  L++++++  + E                
Sbjct: 318 HVEEIAGQQLGKVLQIRNKIP----RRKALISLEEEVLTILTEEGYVSKDETLGTAETIQ 373

Query: 283 ------------------------------HSS---WNEGEIVSVFEDIQAKVVRTVMLD 309
                                          SS   ++E ++  VF+++ +K +R  +++
Sbjct: 374 DLFEDEDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRIVE 433

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R DGR  + +R I++Q GLL R HGS+LF RG+TQ++ VVTLG R+  Q +D+L   
Sbjct: 434 GGKRSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDV 493

Query: 370 -QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +   F + Y+F P   GEV RMGAPSRREIGHG LA RA+ P+LP    FPYT+R+ S 
Sbjct: 494 DELKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVEST 553

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGD 482
           ITES+GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V + ++F      +ILSDI+G 
Sbjct: 554 ITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDITGS 613

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED  G MDFKVAGT+ GITA QMD+K+GGI+  IM  AL QAK GR  IL EMSK     
Sbjct: 614 EDASGDMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSPLP 673

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLA 601
             +L ++ P + IM + P++I  +IG GGK ++ I+E+TG + ++  DDG VKI +  L 
Sbjct: 674 AKRLSKYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLT 733

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            +E ++ +I S+T VP V  IY+   +K +  +G FV     R+GL HIS+LS   +AKT
Sbjct: 734 SLEKSKTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLAKT 793

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            D  K GD + VKL++ +D+G+++LS K +  + N  KP
Sbjct: 794 EDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKP 832


>gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
 gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
          Length = 743

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 288/701 (41%), Positives = 439/701 (62%), Gaps = 27/701 (3%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           IE A GR + +ETG++A+Q+DGAV    G TV+LATV   +    G DF PL V Y+E+ 
Sbjct: 9   IELADGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V + +   D E  P 
Sbjct: 69  SAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNVILFSADGEDMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAAL +S +PF GP+   +V  I+G+YV+NP   E ++  +D+ V  T D ++
Sbjct: 129 ALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKADIDIMVGATLDNIM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE E +++ E  +L+AI   H   K   +A  +L++ C K    +  +++    E    
Sbjct: 189 MVEGEMDEVQESEMLEAIKVAHEAIKVQCQAQLELSEACGK----LVKREYC--HEVNDD 242

Query: 247 MIKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFE 296
            +++D+   C+           +K+ R +  + + ++  + FS E  +  + E++   + 
Sbjct: 243 ELRKDVHEKCYAKAYAVATSGTDKHQRAEAFEAVVEEYKAQFSEEELTDEKVEMIGRYYH 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT
Sbjct: 303 DVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++P  
Sbjct: 363 KADEKMIDDVLNHGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLAHRALKRMIP-- 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
             +PY +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G ++ 
Sbjct: 421 TDYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGQNYA 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+HIL +
Sbjct: 481 ILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGK 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---G 591
           + +   E R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA + I+++   G
Sbjct: 541 IMEAQPEVRPDLKPHAPRIETMTIGKEFIGAVIGPGGKIIQGIQEKTGAVITIEEEDGVG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            ++I+ ++ A I+AA   I++I  VPE+ +IY+G++  +M +GAFV F   +DGL+HIS+
Sbjct: 601 KIEISGTNKATIDAAIRSIKAIVAVPEIGEIYEGKISSIMPYGAFVEFMPGKDGLLHISE 660

Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  +R+       +KEGDT+ VKL+D D + GK KLS KV+
Sbjct: 661 IDWKRLETVEQAGLKEGDTISVKLVDIDAKTGKFKLSHKVL 701


>gi|225570607|ref|ZP_03779632.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
           15053]
 gi|225160620|gb|EEG73239.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
           15053]
          Length = 695

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/693 (40%), Positives = 416/693 (60%), Gaps = 15/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y ER 
Sbjct: 6   EMELAGRKLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  D + SP 
Sbjct: 66  YSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           + +M+ A+ A  +S +PF+GP+   QV  ++   V NP   + + S + L V+ T+D V+
Sbjct: 126 LTAMLGAAIATTISDIPFDGPISATQVGLVDNTLVFNPTAAQKEASDMALTVASTRDKVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ ED +++AI   H   + VI  I  +   C K+    +S     + EE+  
Sbjct: 186 MIEAGANEVPEDKMIEAIFAAHELNQKVIAFIDTIVAECGKQKHTYES---CAVPEELFA 242

Query: 247 MIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            I+E     ++  + F  +K  R + I  +  ++   F +E   W E    +V++  Q K
Sbjct: 243 AIRELVPPQEMEEAVFTDDKQTREENIRVITARLEEAF-AEKEEWLEVLSEAVYQ-YQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR  + +R ++A++ L+ R HGS++F RG TQ   V TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRAVDQIRALAAEIDLIPRVHGSAMFTRGQTQICTVTTLAPLAEAQ 360

Query: 362 YVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L   + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 361 RLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSETEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSD 478
           Y +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+++L+D
Sbjct: 421 YAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDTDDDYLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R  IL+E M+K
Sbjct: 481 IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDEVMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V I  
Sbjct: 541 TIAEPRPEVGAYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSICG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                +  A+ +I  I    E  +I +G+VV + +FGAF+ F   ++G+VHIS++S ER+
Sbjct: 601 VEADSMAEAKRLIEIIVADFEAGQILEGKVVSIKEFGAFLEFAPGKEGMVHISKISKERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DV+  GD V V  L  D  G+I  SMK V
Sbjct: 661 NHVEDVLTLGDVVTVVCLGKDKMGRISFSMKDV 693


>gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
          Length = 743

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 288/701 (41%), Positives = 439/701 (62%), Gaps = 27/701 (3%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           IE A GR + +ETG++A+Q+DGAV    G TV+LATV   +    G DF PL V Y+E+ 
Sbjct: 9   IELADGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V + +   D E  P 
Sbjct: 69  SAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNVILFSADGEDMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAAL +S +PF GP+   +V  I+G+YV+NP   E ++  +D+ V  T D ++
Sbjct: 129 ALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKADIDIMVGATLDNIM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE E +++ E  +L+AI   H   K   +A  +L++ C K    +  +++    E    
Sbjct: 189 MVEGEMDEVQESEMLEAIKVAHEAIKIQCQAQLELSEACGK----LVKREYC--HEVNDD 242

Query: 247 MIKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFE 296
            +++D+   C+           +K+ R +  + + ++  + FS E  +  + E++   + 
Sbjct: 243 ELRKDVHEKCYAKAYAVATSGTDKHQRAEAFEAVVEEYKAQFSEEELTDEKVEMIGRYYH 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT
Sbjct: 303 DVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++P  
Sbjct: 363 KADEKMIDDVLNHGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLAHRALKRMIP-- 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
             +PY +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G ++ 
Sbjct: 421 TDYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGQNYA 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+HIL +
Sbjct: 481 ILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGK 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---G 591
           + +   E R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA + I+++   G
Sbjct: 541 IMEAQPEVRSDLKPHAPRIETMTIGKEFIGAVIGPGGKIIQGIQEKTGAIITIEEEDGVG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            ++I+ ++ A I+AA   I++I  VPE+ +IY+G++  +M +GAFV F   +DGL+HIS+
Sbjct: 601 KIEISGTNKATIDAAIRSIKAIVAVPEIGEIYEGKISSIMPYGAFVEFMPGKDGLLHISE 660

Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  +R+       +KEGDT+ VKL+D D + GK KLS KV+
Sbjct: 661 IDWKRLETVEQAGLKEGDTISVKLVDIDAKTGKFKLSHKVL 701


>gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
 gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
          Length = 727

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 289/709 (40%), Positives = 439/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIEL-GDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILYSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALTVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E N++SE  +L+A+   H      CK  +E + ++     +E          
Sbjct: 185 ENIMMVEGEMNEVSEQDLLEALKAAHEAIKIHCKAQMELMEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +  +C+             K+ R    D + ++  + F+ E      
Sbjct: 235 YCHEENDEDLRKAVHDACYEKAYAIAASGNRNKHERQDAFDAICEEFKAQFTEEELEEKA 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
           G I   + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGSS+F RG+TQ+
Sbjct: 295 GMIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKLDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGVPI  PV+GIAMGL+K
Sbjct: 415 LKGQIP--ADYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT +GITA QMD+K  G++ +I+  AL QAK 
Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKCDGLTYDILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +ILN++++ + + R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILNKLTECIGKPRQDLKPNAPRIETMIIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I++    G ++IA ++   I+ A  +I+ I  VPE+ ++Y+G+V  +M +GAFV F   +
Sbjct: 593 IEEINGVGRIEIAGNNKKMIDDAMRLIKGIVAVPEIGEVYQGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETIEEAGLKEGDDIEVKLLDIDSKTGKFKLSHKVL 701


>gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5]
          Length = 744

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 288/692 (41%), Positives = 434/692 (62%), Gaps = 16/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DG+V+   G+T++LATVV  +  K   DF PL V Y+E+  + G+
Sbjct: 19  GRQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPLQVEYKEKYASCGR 78

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+++RE R  ++EIL++R+IDR++RPLF   Y  E  V +N++  D +  P  ++ +
Sbjct: 79  YPGGFMKREGRANDSEILVARLIDRALRPLFPADYHAEVYVTVNLISADKDIQPDALAGL 138

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  ++G+YV+NP+  E D+  LD+ V GT D +LMVE E
Sbjct: 139 AASAALAVSDIPFGGPISEVRVARLDGEYVINPKFSEMDRVDLDIMVGGTIDNILMVEGE 198

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE+V+L AI F H E K       +L+K   K+  V  +    + +EE+ Q+I ++
Sbjct: 199 MKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHEENDEELRQLIVKE 256

Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRT 305
           L    +        K+ R    + L+ +  + +S E  +     I   F +D+Q K +R 
Sbjct: 257 LYDKAYAIATSGTMKHEREDMFNALEAEFAARYSEEELAEKAMLIHKYFHDDVQKKAMRN 316

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD+ +R+DGR ++ +R I  +V  L   HGS++F RG+TQ++  VTLGT+ DE+  D 
Sbjct: 317 MILDEGLRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSVTLGTKLDEKQKDE 376

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       F++HYNF P +TGE       SRREIGHG LA RA+ P++P   + PY +R+
Sbjct: 377 VLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPMVPLGEENPYAVRV 436

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDE 483
           VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ D     + +LSDI GDE
Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISDSQSGKWAVLSDILGDE 496

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+K+ G+S  ++  AL+QA++GRLHIL ++++ ++E R
Sbjct: 497 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKGRLHILGKLTECIAEPR 556

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNIDDDGTVKIASSSL 600
                F PR+  + IP D I  VIG GGKVI+ I +    T     +D+ G V I     
Sbjct: 557 ADYKPFVPRIVQITIPQDMIGAVIGPGGKVIQDIQKTTGTTITITEVDNKGIVDIFGQDK 616

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A ++ A   I++I  +PEV + Y G++  ++ FGAFV     +D L+HIS++  +R    
Sbjct: 617 AALDGALNRIKAIVAIPEVGETYHGKIRSIVTFGAFVEIMPGKDALLHISEIDYKRFETM 676

Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +  +KEGD + VKL+  D +  K KLS KV+
Sbjct: 677 EETGLKEGDEIDVKLIGIDPKTNKFKLSRKVL 708


>gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9211]
 gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 722

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 287/708 (40%), Positives = 422/708 (59%), Gaps = 24/708 (3%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR ++L TGR A Q+ G+VL   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTTTVSFDGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQSPG-REGADFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++ A+S A +L+ +PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PSDVLAVTASSMATLLAEIPFYGPMAAVRVGLLGDDFVLNPSFREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLE 241
            V+M+E  ANQLSE  V++A+ FG+     +I+A   + K        ID K  D  +++
Sbjct: 183 GVVMIEAGANQLSEQDVIEAVDFGYEAVTELIKAQQSILKESG-----IDHKKPDEQEID 237

Query: 242 EEMSQMIKEDLR------VSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWN 287
           E +   + ++ R      +  F   K  R  +++++K  +     S        +  S N
Sbjct: 238 ETLPNYLDKNGRKPIGELLKKFELTKKERDLKLEEIKTNLGEKIDSLKEDNAVKKAISSN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDT 346
              + + F+ +  K++R  ++    R+DGR  + VR I A  G+L +R HGS LF RG T
Sbjct: 298 PKLLTTSFKSLTKKLMREQIIKDGKRVDGRALDEVRKIEAAAGILPKRVHGSGLFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RRE+GHG LA 
Sbjct: 358 QVLSTATLGTPSDAQEMDDLNPSSDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP    FPY LR+VSE+  S+GS+SM +VCGS++AL+DAGVP+  PV+G AMGL
Sbjct: 418 RALIPVLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGAAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+    +  A+ QAK 
Sbjct: 478 IKEGKEIRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKVTGLEVKTIADAINQAKP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R HIL +M++ + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARTHILEKMNETIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS      E A+++I  +T      +I+ G + +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGVAAEEAQKIIEGLTRKVHEGEIFTGSITRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +HISQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN 
Sbjct: 658 IHISQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVSQNN 705


>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
 gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
          Length = 877

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 290/736 (39%), Positives = 441/736 (59%), Gaps = 51/736 (6%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V I    R + +ETG I RQ+  +V+ T GET++  +V    +  D  DFFPL+V+YQE
Sbjct: 75  SVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPADFFPLSVHYQE 134

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE +  ++E+L+ R+IDR +RP   K +  ETQ++  V  +D   S
Sbjct: 135 RLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHS 194

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P  +++ AA  A+ LS +P +  + G ++  I+ Q+V+NP  ++ + S LDL ++GT  A
Sbjct: 195 PDCLAITAAGIAVALSEIPNKQTIAGVRIGLIDDQFVVNPTTEQMENSELDLMMAGTDSA 254

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLEEE 243
           +LM+E   + L+E+ +L+A+  G    + + +AI  L + C K+ +V   S    +L   
Sbjct: 255 ILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQSCGKKKMVDAISLPPPELYRH 314

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSS------------ 285
           +  +  ++L  +  I  K  R K +  L+ K++S      Y S + SS            
Sbjct: 315 VEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGYVSKDASSGVTESLADIVED 374

Query: 286 ----------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVR 323
                                 + E ++  VF+++ +K +R  +++   R DGR    +R
Sbjct: 375 EDEDEIIVDGEVDEGDFPIKPLFAEVDVKLVFKEVSSKYLRRRIVEGGRRSDGRSPWELR 434

Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ-RNDFMMHYNFLP 382
            I++Q GLL R HGS+LF RG+TQ++ VVTLG  +  Q +D+L  T+    F + Y+F P
Sbjct: 435 PINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDSKSFYLQYSFPP 494

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
              GEV R+GAPSRREIGHG LA RA+ P+LP    FPYT+R+ S ITES+GSSSMA+VC
Sbjct: 495 SCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGSSSMASVC 554

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKVAGT 496
           G  LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED  G MD K+AG 
Sbjct: 555 GGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLILSDITGAEDASGDMDLKIAGN 614

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           +SGI+A QMD+K+ GI+  +M  AL QA+ GR HILNEMSK        L  + P + +M
Sbjct: 615 ESGISAFQMDIKVVGITLPVMEQALFQARDGRQHILNEMSKSSPPPSKALSPYAPLIHVM 674

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            + P+++  +IG GGK I+ I+E+TG   ++  DDGTVKI +  L+ +E ++ +I ++T 
Sbjct: 675 KVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKSKTIIANLTM 734

Query: 616 VPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           VP+V +IY+   +K +  +GAFV     R+GL HIS+LS+  +AK  D  K GD + VKL
Sbjct: 735 VPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSGWLAKAEDAFKVGDRIDVKL 794

Query: 675 LDFDDRGKIKLSMKVV 690
           ++ +D+G+++LS + +
Sbjct: 795 IEINDKGQLRLSSRAL 810


>gi|150003997|ref|YP_001298741.1| polynucleotide phosphorylase/polyadenylase [Bacteroides vulgatus
           ATCC 8482]
 gi|187470937|sp|A6L0A5|PNP_BACV8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149932421|gb|ABR39119.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           ATCC 8482]
          Length = 711

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           D ++MVE E  ++SE  +L A+   H      CK  +E + ++     +E          
Sbjct: 185 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +R +C+             K+ R    D ++ +  + ++ E      
Sbjct: 235 YCHEENDEDLRKAVREACYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ+
Sbjct: 295 ALIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K
Sbjct: 415 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR HILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + 
Sbjct: 533 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 592

Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I++    G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +
Sbjct: 593 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 701


>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
           melanesiensis BI429]
 gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
           melanesiensis BI429]
          Length = 699

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/692 (40%), Positives = 439/692 (63%), Gaps = 23/692 (3%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E+ GR L ++ G++A+QS GA    +G++VVLAT      + +G DF PLTV YQE+ YA
Sbjct: 10  EFFGRKLTIQYGKVAKQSSGAAWVQFGDSVVLATANISDRVIEGVDFVPLTVEYQEKFYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE +PTE+ IL +R+IDR IRPLF K  +N+ Q+I+ V+  D ++ P V 
Sbjct: 70  AGKIPGGFIKREGKPTESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGDTPPDVT 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
            + AAS AL  S +PF+G V G ++ Y++G++V+ P  ++ + S LD+ V+G++DA+ MV
Sbjct: 130 GIFAASLALNFSKIPFQGIVAGVRIGYVDGEFVIFPTEEQLKNSKLDIVVAGSKDAITMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL------AKMCAKEPIVIDSKDFSKLEE 242
           E EA +++E+ ++ A++  H   K +IE   ++       KM  +EP   D     + EE
Sbjct: 190 EGEAKEVTEEEMVQALMVAHEAIKKLIEFEEEILREFNVEKMEIEEPKPKDEL-IGRFEE 248

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS------VFE 296
               +++ +LR    I EK  R  ++ + K++++S    E    +E ++        +F+
Sbjct: 249 ---LLVENELRKRLLIKEKLERSLKLKEYKEELISKIFEEFEIDDEEKLTQEMLLKELFD 305

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +   K++R +++++ +R DGR  E +R I+ +VG+L RTHGS+LF RG+TQ++ +VTLG 
Sbjct: 306 EKAKKLMRKIIINEGIRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGA 365

Query: 357 REDEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
             +EQ VD++   GT+R  F++HYNF P + GEV  +  P RREIGHG LA RA+  V P
Sbjct: 366 PMEEQIVDTIMEEGTKR--FILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVAP 423

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPY +R+VSEI ES+GSSSMATVC  SLALMDAGVPI   VAG+AMGL+ D ++ +
Sbjct: 424 DEEDFPYVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVDEENEV 483

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT +GITA QMD KI G+ E ++  AL+QA+  R+ IL+ 
Sbjct: 484 VLTDIQGLEDHWGDMDFKVAGTRNGITAFQMDCKIAGVGEELLKKALKQARVARMRILDI 543

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTV 593
           M + + E R  L  + P +  + I P ++  +IG GGKVI+ IV++   +++IDD  G V
Sbjct: 544 MFETIKEPRKSLSPYAPLIANIEIDPMKVGELIGPGGKVIKSIVKEFDVEISIDDVTGKV 603

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +      ++  A E I+++T   EV  +++G++ ++  +G FV     + GL H S+L 
Sbjct: 604 SVYGKDQNKVNQAIEYIKTLTREIEVGDMFEGKITRIEPYGLFVELMPGKIGLAHSSKLG 663

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +   +     K GD + V +++ DD G+I+L
Sbjct: 664 NDS-KEFRKKYKVGDVIKVVVVNIDDSGRIQL 694


>gi|254880757|ref|ZP_05253467.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           4_3_47FAA]
 gi|294778033|ref|ZP_06743467.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           PC510]
 gi|319639767|ref|ZP_07994497.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
 gi|254833550|gb|EET13859.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           4_3_47FAA]
 gi|294448091|gb|EFG16657.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           PC510]
 gi|317388584|gb|EFV69433.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
          Length = 728

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 23  VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 81

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 82  KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 141

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V+ T 
Sbjct: 142 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMVAATY 201

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           D ++MVE E  ++SE  +L A+   H      CK  +E + ++     +E          
Sbjct: 202 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 251

Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +R +C+             K+ R    D ++ +  + ++ E      
Sbjct: 252 YCHEENDEDLRKAVREACYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 311

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ+
Sbjct: 312 ALIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 371

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 372 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 431

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K
Sbjct: 432 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 489

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 490 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 549

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR HILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + 
Sbjct: 550 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 609

Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I++    G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +
Sbjct: 610 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 669

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 670 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 718


>gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/
           RNA binding / nucleic acid binding / polyribonucleotide
           nucleotidyltransferase [Arabidopsis thaliana]
 gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 922

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/751 (38%), Positives = 449/751 (59%), Gaps = 63/751 (8%)

Query: 2   FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           F  H +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL 
Sbjct: 84  FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 143

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +
Sbjct: 144 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 203

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D   +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++
Sbjct: 204 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 263

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  A+L +E  +N L E+++L A+  G +  +    AI  LAK   K P ++D+     
Sbjct: 264 GTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 322

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284
            +L + + ++  E+L  +  I  K  R K I  L++K+             V++ + E  
Sbjct: 323 PELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQ 382

Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308
                                                ++E ++  VF+++ +K++R  ++
Sbjct: 383 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 442

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G
Sbjct: 443 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 502

Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           + +   F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S
Sbjct: 503 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481
            + ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 622

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K    
Sbjct: 623 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 682

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600
             L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +
Sbjct: 683 PTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 742

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659
           A +E A+ +I  +T VP V  IY+   +K M  +GAFV     R+GL HIS+LS E +AK
Sbjct: 743 ASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 802

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D  K GD + VKL++ +++G+++LS++ +
Sbjct: 803 PEDAYKVGDRIDVKLIEVNEKGQLRLSVRAL 833


>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 948

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/751 (38%), Positives = 449/751 (59%), Gaps = 63/751 (8%)

Query: 2   FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           F  H +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL 
Sbjct: 110 FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 169

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +
Sbjct: 170 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 229

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D   +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++
Sbjct: 230 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 289

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  A+L +E  +N L E+++L A+  G +  +    AI  LAK   K P ++D+     
Sbjct: 290 GTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 348

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284
            +L + + ++  E+L  +  I  K  R K I  L++K+             V++ + E  
Sbjct: 349 PELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQ 408

Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308
                                                ++E ++  VF+++ +K++R  ++
Sbjct: 409 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 468

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G
Sbjct: 469 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 528

Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           + +   F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S
Sbjct: 529 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 588

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481
            + ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G
Sbjct: 589 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 648

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K    
Sbjct: 649 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 708

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600
             L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +
Sbjct: 709 PTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 768

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659
           A +E A+ +I  +T VP V  IY+   +K M  +GAFV     R+GL HIS+LS E +AK
Sbjct: 769 ASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 828

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D  K GD + VKL++ +++G+++LS++ +
Sbjct: 829 PEDAYKVGDRIDVKLIEVNEKGQLRLSVRAL 859


>gi|284992338|ref|YP_003410892.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
           obscurus DSM 43160]
 gi|284065583|gb|ADB76521.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
           obscurus DSM 43160]
          Length = 762

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 294/706 (41%), Positives = 425/706 (60%), Gaps = 37/706 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +  ETGR+A+Q+ G+V+ T G+T++L+     R  K+  DFFPLTV+ +ER YA 
Sbjct: 33  FGSRTITFETGRLAKQAAGSVVVTMGDTMLLSATTAGRQPKEHFDFFPLTVDVEERMYAA 92

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+I V+  D +    V++
Sbjct: 93  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFAKGLRNEVQVVITVLSLDPDHLYDVLA 152

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184
           +  ASA+  LSGLPF GPV G +V  +NGQ+V  P   E +    D+ V+G        A
Sbjct: 153 INGASASTQLSGLPFSGPVGGTRVALVNGQWVGFPTHAELEDAVFDMVVAGRVLPDGDVA 212

Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKE 228
           ++MVE EA + + ++V         + +  G    KP I+A+         K AK  A  
Sbjct: 213 IMMVEAEATEKTIELVAGGATAPTEEVVAQGLEAAKPFIKALCEAQSALAEKAAKPVADF 272

Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           P  +D +D  ++ +E      + E   ++     K  R    D+LK   V+  +      
Sbjct: 273 PRFLDYQDDVYAAVESHAGARLAEVQAIAG----KQERNDATDELKDGTVAALAGRFEG- 327

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ + F  +  KVVR  +L  KVR+DGR    +R +SA+V +L R HGS+LF RG+T
Sbjct: 328 REKEVSAAFRALTKKVVRQRILRDKVRIDGRGLTDIRPLSAEVEVLPRVHGSALFERGET 387

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 388 QILGVTTLNMLRMEQQLDTLSPVNRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 447

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGL
Sbjct: 448 RALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAMGL 507

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           V D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL 
Sbjct: 508 VSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAQALT 567

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ + ++  ++  + PRV  + IP D+I  VIG  G++I  I ++TG
Sbjct: 568 QARAARLHILDVMNEAI-DAPDEMSPYAPRVTTVRIPVDKIGAVIGPKGQMINAIQDETG 626

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ + +S     +AA + I +I +  +P+V + + G VVK   FGAFV   
Sbjct: 627 ADITIEDDGTIYVGASDGPSAQAAVDRINAIANPQMPKVGERFLGTVVKTTPFGAFVSLL 686

Query: 641 GARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGLVHIS+L   +R+ K  DVV  GD + V++ D D RGKI L
Sbjct: 687 PGKDGLVHISKLGGGKRIGKVEDVVNVGDKLQVEITDIDARGKISL 732


>gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           RCC307]
 gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RCC307]
          Length = 719

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 287/706 (40%), Positives = 425/706 (60%), Gaps = 14/706 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L T R A Q+ G+VL   G+T VL T       ++G DF PLT +Y+
Sbjct: 4   ETRSISFDGREIRLTTRRYAPQAGGSVLIECGDTAVLVTATRANG-REGIDFLPLTCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRESRP E   L  R+IDR IRPLF    +++ Q++  VM  D   
Sbjct: 63  ERLYAAGRIPGSFMRRESRPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSVDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+++  AS A +L+ +PF GP+   +V  +   ++LNP   E ++  LDL V+GT +
Sbjct: 123 PPDVLAVTGASLATLLAKIPFYGPMAAVRVGLLGDDFILNPSYREIERSELDLVVAGTAE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPIVIDSKDFSKLEE 242
            V+MVE  A QL E+ +++AI FG+     +I    + +A++  ++ +     + + + +
Sbjct: 183 GVVMVEAGAQQLPEEDMIEAIDFGYEAVLELIRHQKETIAELGIEQVVPEKPAEDTTVPD 242

Query: 243 EMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGEIV 292
            +++   +D+   +S F   K  R  Q+D +K K     ++           S N   + 
Sbjct: 243 YLAKQCTKDIGAVLSQFTLTKAERDSQLDSIKAKAAEAIAALKETDAVRAAVSSNGKLLG 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVV 351
           + F+ +   ++R  ++    R+DGR  + VR ISA  G+L +R HGS LF RG TQ +  
Sbjct: 303 NSFKALTKSMMRAQIVKDGKRVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLST 362

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D Q +D L+ +    ++ HYNF P + GE   M +P RREIGHG LA RA+ P
Sbjct: 363 ATLGTPSDAQEMDDLNPSNEKHYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERALLP 422

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP    FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVPI+ PVAG AMGL+++G 
Sbjct: 423 VLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAAPVAGAAMGLIREGS 482

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G ED LG MDFKVAGT+ GITA+QMDMKI G++   +  A+ QA+  RLHI
Sbjct: 483 EVRVLTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLAMKTIGEAVTQARPARLHI 542

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + L + R  +    PR     I P+ I  VIG GG+ I+GI E+T  K++I+D G
Sbjct: 543 LEKMLEALDKPRDTMSPHAPRRLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDTG 602

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V +AS   A  E A+++I  +T      + + G+V +V+  GAFV     ++G++HISQ
Sbjct: 603 IVTVASHDGAAAEEAQKIIEGLTRRVSEGEYFDGKVTRVIPIGAFVEILPGKEGMIHISQ 662

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           LS +RV K  DVV  GD V V++ + D+RG+I L+++ V Q+   P
Sbjct: 663 LSDQRVEKVEDVVNVGDEVRVRVREIDNRGRINLTLRGVPQDGSDP 708


>gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 613

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/611 (43%), Positives = 398/611 (65%), Gaps = 7/611 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE    G P  +ETG  A+Q++GAV+   G+T VL   V     +   DF PLTV Y+E+
Sbjct: 6   VETVVNGAPYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREK 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGG+++RE +P+E EIL++R IDR IRPLF K + N+  +    +  D +  P
Sbjct: 66  YYAYGKIPGGFVKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSADDQYDP 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+ +V ASAAL +S +PFEGP+ G +V  ++GQ+++NP   +   S L++ V+G++DA+
Sbjct: 126 DVLGIVGASAALHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAGSKDAI 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSKDFSKLEEE 243
           +MVE  A ++ E+V+L+A++FGH E K +IE   +L     K+   I ID ++   L+E+
Sbjct: 186 VMVEGGAKEVPEEVILEAMLFGHQEIKKLIELQEELRAKYGKDKLEIPIDEEEIL-LKEK 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             ++  E +R +  I +K  R KQI+ + +++ +          +   V  ++D+ + V+
Sbjct: 245 FKELAYERIREAFNISDKKERNKQINAIFEEIKTTLEIPEEKVKKASFV--YKDVVSNVM 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L +  R+DGR  E +R I  +VG+  R HGS++F RG TQA V VTLG+  + Q  
Sbjct: 303 RDLVLYENRRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIE 362

Query: 364 DSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +S+ +G     FM+HYNF P +TGE       SRREIGHG LA RA+ P++P   +FPY 
Sbjct: 363 ESIEAGETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYV 422

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VS+I ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K  D F++LSDI GD
Sbjct: 423 IRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGD 482

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+T++QMD+K+ G+++ I+  AL+QA+ GR +IL+ M + + E 
Sbjct: 483 EDHLGDMDFKVAGTRDGVTSIQMDIKVRGLTKEILQKALEQARVGRYYILDLMYQAIPEP 542

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P V  + + P++I  +IG  GK I+ I+E+TG K+++D  G VKI ++S   
Sbjct: 543 RKELSPYAPTVTTLRVLPEKISVIIGPAGKNIKKIIEETGVKIDLDPTGLVKIYATSKVA 602

Query: 603 IEAAREMIRSI 613
            E A +MI  +
Sbjct: 603 AEKAIDMINQL 613


>gi|171741337|ref|ZP_02917144.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
           27678]
 gi|171276951|gb|EDT44612.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
           27678]
          Length = 880

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGFEAAKPFIKVICEAQAELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  E++   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           ++ E    I + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQAK  R  IL  +++ + +   ++  F PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+E+I SI +  VPE  + Y G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734

Query: 692 QNTGKP 697
           Q +  P
Sbjct: 735 QESSAP 740


>gi|291458661|ref|ZP_06598051.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291419194|gb|EFE92913.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 701

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 281/690 (40%), Positives = 426/690 (61%), Gaps = 9/690 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+  Q++GA L  YGET VL++       +DG DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDIGRVCAQANGAALMHYGETTVLSSCTASEKPRDGIDFFPLSVEYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGK PGG+ +RE+RP ++ IL  R+IDR +RPLF K Y+N+  +   V+  D + SP +
Sbjct: 67  AVGKFPGGFKKREARPADSAILTDRVIDRPMRPLFPKDYRNDVLLDNLVLSVDQDCSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           ++M+ +S A  +S +PF+GP    QV  ING++++NP   E   S L L V+ T+D V+M
Sbjct: 127 LAMLGSSLAACISDVPFDGPCASTQVGMINGEFIMNPGNAEKTASDLLLTVASTRDKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           +E  AN++S++ +++AI   H   + +I     +   C K+     S    + L E + +
Sbjct: 187 IEAGANEISDEKMIEAIYLAHGLNQQIIGFFDSIIAECGKKKHEYVSCSIPETLFERIRE 246

Query: 247 MIKE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++ E ++  + F  +K  R + +  L +K+   FS +  + +   +       + K VR 
Sbjct: 247 IVPEKEMEKAVFADDKKERDENLSVLSQKLEGAFSEDEEALS--LLPEAIYQYEKKTVRR 304

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L    R DGR  + +R + A+V L+ R HGS++F RG TQ + + TL    + Q V+ 
Sbjct: 305 MILKDHKRPDGRRIDEIRPLEAEVDLIPRVHGSAMFKRGQTQILNITTLAPLSEVQKVEG 364

Query: 366 LSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           L+  +     +H YNF   + GE      P RREIGHG LA RA+ PVLP    FPY +R
Sbjct: 365 LNEYETEKRYLHQYNFPGYSVGEARASRGPGRREIGHGALAERALLPVLPSVEDFPYAIR 424

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGD 482
            VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV  +  +D+++L+DI G 
Sbjct: 425 SVSETMESNGSTSMASTCASCMSLMAAGVPIRKMVAGISCGLVTGESDEDYLVLTDIQGL 484

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSE 541
           ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A+++A   RL I++  M   +SE
Sbjct: 485 EDFFGDMDFKVTGTREGITAIQMDIKIHGLTRDIVEEAIRRAHEARLFIMDGVMKSAISE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P++  + I P++I +VIG  GKVI GI E+TGAK++IDD G + I+   LA
Sbjct: 545 PRKELSPYAPKIITLQINPEKIGDVIGKQGKVINGISEETGAKIDIDDSGMISISGIDLA 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A+ +I SI +  E  +I  G VV++M+FGAFV     +DG+VHIS+L+  RV +  
Sbjct: 605 SLEKAKSIIESIVNDVEPGQIIDGTVVRIMNFGAFVQLSPNKDGMVHISKLADGRVNRVE 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           DVV+ GD V VK+L+ D  G+I L+M+ +D
Sbjct: 665 DVVQIGDKVRVKVLEIDKMGRINLTMRPMD 694


>gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5]
 gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5]
          Length = 775

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/683 (40%), Positives = 429/683 (62%), Gaps = 20/683 (2%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +ETG+ A+ +DG+V+   G T VL T V         DF PL V+Y+ER  A G+IP
Sbjct: 15  PIIIETGKYAKLTDGSVVVRQGGTAVLVTAVMSDEPITDVDFTPLAVDYRERASAYGRIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE +PT+ EIL+SR+IDR IRPLF + + ++  +    +  D +  P V+++  A
Sbjct: 75  GGFTKREGKPTDREILVSRVIDRPIRPLFPEGFFHDVIITALTLSADDKYDPDVLAITGA 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           SAAL +S +PFEGP+ G +V  +NG++V NP  ++  +  LD+ ++GT+DA++MVE    
Sbjct: 135 SAALHISRIPFEGPIAGVRVCRVNGEFVANPTYEQRKEADLDIVMAGTKDAIVMVEGGGK 194

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMI 248
           ++ E+V+ DA+ FG +  K VIEA  +L +   K     + + +       LEEE +  I
Sbjct: 195 EIPEEVLADALFFGLDAIKEVIEAQERLREKVGKPKFEYQKVELPEDILKALEEECTPKI 254

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSVFEDIQAKVVRTV 306
            E   +     +K  R   +D    K+V  F   H    E    +   ++ ++++++R  
Sbjct: 255 LEAFNIK----DKKERYSTLD----KIVEEFIEAHQIPEELHFAVKYFYKKLESRLMREK 306

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L + VR+DGR    +R I  +V   +R HG+++F RG TQA V VTLGT ++   ++++
Sbjct: 307 VLKEGVRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETI 366

Query: 367 S-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           + G     FM+HY+  P + GE    G P RREIGHG LA RAI P+LP   ++P+ +R+
Sbjct: 367 AEGEVFKRFMLHYSMPPFSVGEAKPWGPPRRREIGHGALAERAIEPLLPPEEEYPFIIRV 426

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPI--SKPVAGIAMGLVKDGDDFIILSDISGDE 483
           VS+I ES+GS+SMATVCG+SLAL DAGVP+  +K VAGIAMGL+ + D ++ILSDI GDE
Sbjct: 427 VSDILESNGSTSMATVCGASLALFDAGVPMKDNKHVAGIAMGLILEKDRYVILSDILGDE 486

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GIT++QMD+K+ GI++ IM+ AL+QA+ GRL+IL +M + + E R
Sbjct: 487 DHLGDMDFKVAGTKDGITSVQMDIKVKGITKEIMLDALKQAREGRLYILEKMYEAIPEPR 546

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +   +TP+VE++ +P ++   +IG GG  ++ I ++TG KV + + G V +      ++
Sbjct: 547 KEPHPYTPKVEVVDVPEEKAPLIIGPGGSTVKKIYDETGVKVWVGEQGKVYLFVFPGGDV 606

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++MI+ I    EV  +YKG + +V  +G FV     + GL+H+S+++ E V   ++ 
Sbjct: 607 EKAKQMIQDIVREVEVGAVYKGTITRVEPYGVFVELWPGKIGLLHVSKMA-EPVRSATEK 665

Query: 664 VKEGDTVWVKLLDFDDRGKIKLS 686
            K G+ + VK+LD D+ G+ + +
Sbjct: 666 YKVGEEIIVKVLDLDELGRPRFT 688



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 61/102 (59%), Gaps = 6/102 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D+ G  +  +  + ++   ++ ++     P+V  +Y+G+VV+V  +GAF+ +   + 
Sbjct: 677 LDLDELGRPRFTTIGIEDVGTEKKEVK-----PKVGDVYEGKVVRVEPYGAFIEYAPGKV 731

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           GL+H+S++  ERV       K GD V VK+++ D++G+ K +
Sbjct: 732 GLLHVSKMK-ERVKDARQKYKVGDVVKVKVVEIDEQGRPKFT 772


>gi|309802878|ref|ZP_07696979.1| guanosine pentaphosphate ligase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308220345|gb|EFO76656.1| guanosine pentaphosphate ligase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 763

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  E++   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           ++ E    I + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQAK  R  IL  +++ + +   ++  F PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+E+I SI +  VPE  + Y G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734

Query: 692 QNTGKP 697
           Q +  P
Sbjct: 735 QESSAP 740


>gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea]
          Length = 822

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/741 (40%), Positives = 435/741 (58%), Gaps = 60/741 (8%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           ++V+I +  R + +ETG I RQ+ GAV  T GET+V  TV       +  DFFPL+VNYQ
Sbjct: 78  YSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQ 137

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER  A G+  GG+ +RE RP +NE+L+ R+IDR +R    K + +ETQ++  V+ +D   
Sbjct: 138 ERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGLH 197

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P  +++ AA  A+ LS LP   PV G +V  + G+Y++NP  +E + S LDL V+GT  
Sbjct: 198 PPDALAVTAAGIAVALSELPHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLVVAGTDS 257

Query: 184 AVLMVE-----------LEANQLSEDVV-------------------LDAIIFGHNECKP 213
           A+LM+E           LEA ++ +D V                   +DAI     E   
Sbjct: 258 AILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGKPKMIDAIKLPPPELYK 317

Query: 214 VIEAIS--KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEK----YV 263
            +E I+  +L      +  +   K    LEE++  ++ +       V+  IPE     YV
Sbjct: 318 HVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVGKSVATVIPETLPDLYV 377

Query: 264 RCKQIDDLKKKMVSYFSSEHSS----------WNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
             ++ +++           H            ++E ++  VF++  +K +R  +++   R
Sbjct: 378 DEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKETTSKYLRKRIVEGGRR 437

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT-QRN 372
            DGR SE VR I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G  +  
Sbjct: 438 SDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDESK 497

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            F + Y+F P   GE  R+GAPSRREIGHG LA RA+ P+LP   +FPYT+R+ S ITES
Sbjct: 498 RFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYTVRVESNITES 557

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486
           +GSSSMA+VCG SLAL+DAGVP+  P+AGIAMG+V D  +F      +ILSDI+G ED  
Sbjct: 558 NGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDAS 617

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAG    +TA QMD+K+GGI+ ++M  AL QAK GR  IL EMSK L      L
Sbjct: 618 GDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSKCLPPPSKTL 677

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605
             + P + +M + P+++  +IG GGK +R I+E TG + ++  DDGTVKI +  L  +E 
Sbjct: 678 SIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQDDGTVKITARDLESLEK 737

Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ MI ++T VP +  IY+   +K +  +GAFV     R+GL HIS+LS   +AK  D  
Sbjct: 738 SKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSPSYLAKAEDAF 797

Query: 665 KEGDTVWVKLLDFDDRGKIKL 685
           K GD V VKL++ +++G++ L
Sbjct: 798 KVGDRVDVKLIEVNEKGQLAL 818


>gi|150026085|ref|YP_001296911.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
           psychrophilum JIP02/86]
 gi|187610264|sp|A6H185|PNP_FLAPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149772626|emb|CAL44109.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 711

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/692 (42%), Positives = 429/692 (61%), Gaps = 20/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETGR+A+Q+DG+V+   G+TV+L TVV  R    G DF PLTV+Y+E+  A G+
Sbjct: 15  GRNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP+++E+L  R++DR +RPLF   Y  E QV+I +M HD E  P  ++ +
Sbjct: 75  FPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDEEVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAAL LS +PFE  +  A+V  I+G++++NP R   +   +D+ +  + D++ MVE E
Sbjct: 135 AASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMMIGASTDSIAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD------FSKLEEEMS 245
             ++SE  +L+AI F H   K  I A  +LA    K+ +    K+      ++K++E   
Sbjct: 195 MKEISEAEMLEAIKFAHEHIKVQIAAQERLAAAFGKKEVRTYEKEKSDDAIYAKVKEAAY 254

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVR 304
             I    +V      K  R    D +K+++ + F+ E  + N G++VS  F     + VR
Sbjct: 255 DKIYNIAKVGS---AKQERTAAFDAVKEEVKALFTEEELAEN-GDLVSKYFYKTNKEAVR 310

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            V LD   R+DGR +  +R I  +V  L   HGS+LF RG+TQA+   TLGT  +   +D
Sbjct: 311 NVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQID 370

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT+R
Sbjct: 371 SPSQQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIP--ADCPYTIR 428

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMATVC  +L+LMDAG+ + +PV+GIAMGL+ DG+ F +LSDI GDED
Sbjct: 429 VVSEVLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAVLSDILGDED 488

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+KI G+   IM  AL QA+ GRLHILN +++ L+  ++
Sbjct: 489 HLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILTETLATPKV 548

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSSLA 601
            +  + P++ +  IP + I  +IG GGKVI+ + + TG  +    +D+ G V+I  +  A
Sbjct: 549 DVKAYAPKIIMRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEMGVVEILGTDPA 608

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAK 659
            IEA    I SIT  P++ + Y+ +V+K++DFGA V +      + L+H+S+L+ ER   
Sbjct: 609 GIEAVLAKIESITFKPQIGEAYEVKVIKMLDFGAVVEYTAVPGNEVLLHVSELAWERTEN 668

Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
            +DVV  GD   VK L  D +  K K+S K +
Sbjct: 669 VTDVVNMGDVFMVKYLGLDPKTRKEKVSRKAL 700


>gi|238916832|ref|YP_002930349.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238872192|gb|ACR71902.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 723

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 279/690 (40%), Positives = 423/690 (61%), Gaps = 13/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E AGR L+++ GR+  Q++GA L  YG+TVVL+T    +  ++G DFFPL+V Y+E+ 
Sbjct: 35  EMELAGRTLRVDIGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEEKM 94

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D    P 
Sbjct: 95  YAAGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDENCRPE 154

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           +++M+ ++ A  +S +PF+GP    Q+  I+G++++NP   + Q G L L V+ T+  V+
Sbjct: 155 LLAMIGSAIATSISDIPFDGPCATTQIGMIDGEFIVNPSQAQWQDGDLQLTVASTKQKVI 214

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMS 245
           M+E  AN++ ED +++AI   H+  + +I  I K+     KE    +     +++ E M 
Sbjct: 215 MIEAGANEIPEDKMIEAIYKAHDINQTIIAFIDKIVAEVGKEKHSYVSCAVPAEMFEAMK 274

Query: 246 QMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
           Q++  E++ V+ F  +K  R K ID + +KM   F +++  W    GE V  +   Q K 
Sbjct: 275 QVVSPEEMEVAVFTDDKQTREKNIDAVTEKMKEAF-ADNEEWLAVLGEAVYQY---QKKT 330

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   VVTL    + Q 
Sbjct: 331 VRKMILKDHKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDVVTLAPLSEAQK 390

Query: 363 VDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           VD L        ++ HYNF   + GE      P RREIGHG LA +A+ PVLP   +FPY
Sbjct: 391 VDGLDENVTTKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAEKALVPVLPSEEEFPY 450

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479
            +R VSE  ES+GS+SMA+ C S ++LM AGVPI + VAGI+ GLV  +  DD+I+L+DI
Sbjct: 451 AIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGETDDDYIVLTDI 510

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++ +  RL I++  M   
Sbjct: 511 QGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIRRTREARLFIMDTCMKPA 570

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R  +GE+ P++   +I P +I  V+G  GK I  I+++ G K++I DDG V +   
Sbjct: 571 IAEPRKTVGEYAPKIIQTSIDPAKIGEVVGQRGKTINAIIDECGVKIDITDDGFVSVCGV 630

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A ++ A + I++I +  E  KIY+G+VV + +FGAFV F   ++G+VHIS++S ER+ 
Sbjct: 631 EQAGMDKAMKYIKTIVEDFEEGKIYEGKVVSIKEFGAFVEFAPGKEGMVHISKISNERIN 690

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
              DV+  GD V  K +  D  G+I  S+K
Sbjct: 691 HVEDVLTLGDHVKCKCMGKDKMGRISFSIK 720


>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 922

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/751 (38%), Positives = 448/751 (59%), Gaps = 63/751 (8%)

Query: 2   FDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           F  H +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL 
Sbjct: 84  FPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLY 143

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +
Sbjct: 144 VHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSY 203

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D   +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++
Sbjct: 204 DGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLA 263

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  A+L +E  +N L E+++L A+  G +  +    AI  LAK   K P ++D+     
Sbjct: 264 GTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGK-PKMLDAIRLPP 322

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-------------VSYFSSEHS 284
            +L + + ++  E+L  +  I  K  R K I  L++K+             V++ + E  
Sbjct: 323 PELYKHVKELAGEELTKALQIKSKISRRKAISPLEEKVLTILTEKGYVIDEVAFGTIEAQ 382

Query: 285 S------------------------------------WNEGEIVSVFEDIQAKVVRTVML 308
                                                ++E ++  VF+++ +K++R  ++
Sbjct: 383 PDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIV 442

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G
Sbjct: 443 EGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEG 502

Query: 369 T-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           + +   F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S
Sbjct: 503 SDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVES 562

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISG 481
            + ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITG 622

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K    
Sbjct: 623 AEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPP 682

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSL 600
             L L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +
Sbjct: 683 PTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDV 742

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAK 659
           A +E A+ +I  +T VP V  IY+   +K M  +GAFV     R+GL HIS+LS E +AK
Sbjct: 743 ASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAK 802

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D  K GD + VKL++ ++ G+++LS++ +
Sbjct: 803 PEDAYKVGDRIDVKLIEVNEEGQLRLSVRAL 833


>gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
 gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
          Length = 770

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 57  VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 115

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 116 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 175

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  D+ ++  +DL V  T 
Sbjct: 176 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMVGATY 235

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E N++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 236 ENIMMVEGEMNEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 285

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +  +C+             K+ R    D ++++  + FS E      
Sbjct: 286 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 345

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ+
Sbjct: 346 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 405

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 406 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 465

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 466 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 523

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 524 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 583

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 584 GREYILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 643

Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
              ID+ G ++IA ++   IE A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 644 IEEIDNIGRIEIAGTNKKCIEDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 704 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 752


>gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2]
          Length = 713

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/696 (41%), Positives = 437/696 (62%), Gaps = 20/696 (2%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +ETG++A+Q+DG+V+   G+T++LATVV+ + L    DF PL V YQE+  A GKI
Sbjct: 16  REITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAGKI 75

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PGG+LRRE +  ++E+LISR++DR+IRPLF   YK+ETQ+ I ++  D E  P  ++ +A
Sbjct: 76  PGGFLRREGKLGDHEVLISRLVDRAIRPLFPDNYKHETQINIFLISADPEILPESLAGLA 135

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           ASAALM+S +PFEGP+   +V  I+GQ+V+NP     ++  +DL V G++  +LMVE E 
Sbjct: 136 ASAALMISPIPFEGPISEVRVARIDGQFVVNPTQSALEKADIDLMVGGSEKNILMVEGEM 195

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQM 247
           +++ E  ++ AI F H   K   +   +LA   A      EP+  ++++F +L++   + 
Sbjct: 196 DEVQEADIIAAIQFAHEAIKLQCQVQKELADAVATLKFEAEPLQ-ETENF-ELKDRTFKA 253

Query: 248 IKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           + + +  +    I  K++R      +KK+ +     +    +       + +++ +VVR 
Sbjct: 254 LYDKVYATAKKGITNKHLRKSSFKQIKKEYLKELLQQDPETSTVHFDKYYYELEKQVVRD 313

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           + L++ +R+DGR  + +R I +++  L   HGSSLF RG+TQ++  VTLGT+ DEQ +D 
Sbjct: 314 LALNEGLRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKLDEQLIDR 373

Query: 366 --LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             L+G  R  FM+HYNF   +TGEV     P RREIGHG LA RA+  VLP   + PYT+
Sbjct: 374 ALLNGYSR--FMLHYNFPSFSTGEVKFNRGPGRREIGHGHLAMRALKKVLPLDTENPYTI 431

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481
           RIVS+I ES+GSSSMATVC  SLALMDAG+ I   V+GIAMGL+ D       ILSDI G
Sbjct: 432 RIVSDILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQTGKHAILSDILG 491

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DED LG MDFKVAGT  GITA QMD+K+ G++  ++  AL+QAK GRLHIL EM+K ++E
Sbjct: 492 DEDALGDMDFKVAGTAKGITACQMDIKVSGLTPQLLQKALEQAKAGRLHILGEMNKTITE 551

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIASS 598
            +    +  P    M IP + I  VIG  GK+++ +  +TG  + I++    G +K    
Sbjct: 552 PKTTYKKHAPSFSTMTIPKNMIGAVIGPSGKIVQEMQRETGTTIIIEEVEGKGIIKFFGP 611

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   +++A + ++ I   P V  +Y+G V  ++ FGAFV F   ++GL+HIS++  ER+ 
Sbjct: 612 NQEAVQSAEKRVKDIVAEPVVGDVYQGTVKSIVPFGAFVEFMPGKEGLLHISEVKWERIE 671

Query: 659 KTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
               V++ G+ + VKLL+ D + GK KLS KV+  N
Sbjct: 672 NLDQVLELGEVIPVKLLEIDPKSGKYKLSRKVLLPN 707


>gi|306823630|ref|ZP_07457005.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           ATCC 27679]
 gi|304553337|gb|EFM41249.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           ATCC 27679]
          Length = 880

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  E++   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           ++ E    I + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQAK  R  IL  +++ + +   ++  F PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+E+I SI +  VPE  + Y G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734

Query: 692 QNTGKP 697
           Q +  P
Sbjct: 735 QESSAP 740


>gi|283455304|ref|YP_003359868.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           Bd1]
 gi|283101938|gb|ADB09044.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
           dentium Bd1]
          Length = 880

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 303/726 (41%), Positives = 440/726 (60%), Gaps = 42/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  E++   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           ++ E    I + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQAK  R  IL  +++ + +   ++  F PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+E+I SI +  VPE  + Y G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFED 734

Query: 692 QNTGKP 697
           Q +  P
Sbjct: 735 QESSAP 740


>gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
 gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
          Length = 714

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  INGQ+V+NP  ++ +Q  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 185 ENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +  +C+             K+ R    D ++++  + FS E      
Sbjct: 235 YCHEVNDEELRKAVHNACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ+
Sbjct: 295 ALIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 415 LKGQIP--ANYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I   D+ G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 593 IEEVDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701


>gi|310288093|ref|YP_003939352.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           S17]
 gi|309252030|gb|ADO53778.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           S17]
          Length = 887

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 296/714 (41%), Positives = 432/714 (60%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  D + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           A+ M+E  A + +  ++ D          +  G    KP I+ I + A+   KE    ++
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICE-AQNELKEKAAKET 256

Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           KDF    E        + ++  EDL  +  I EK  R  +I ++K+ +    ++E +  +
Sbjct: 257 KDFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMD 316

Query: 288 ----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 317 DAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG 
Sbjct: 377 GETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 437 LAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 497 MGLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           ALQQA   R  IL+ +++ + +   ++ E+ PR+    +P D+I  +IG  GK+I  I E
Sbjct: 557 ALQQAHEARTTILDLINECI-DGPAEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQE 615

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGTV I+S      E A+ +I  I +  VPE  + Y G+VVK   FGAFV
Sbjct: 616 DTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|311064966|ref|YP_003971692.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           PRL2010]
 gi|310867286|gb|ADP36655.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
           bifidum PRL2010]
          Length = 887

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 296/714 (41%), Positives = 432/714 (60%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  D + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           A+ M+E  A + +  ++ D          +  G    KP I+ I + A+   KE    ++
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICE-AQNELKEKAAKET 256

Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           KDF    E        + ++  EDL  +  I EK  R  +I ++K+ +    ++E +  +
Sbjct: 257 KDFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMD 316

Query: 288 ----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 317 DAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG 
Sbjct: 377 GETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 437 LAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 497 MGLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           ALQQA   R  IL+ +++ + +   ++ E+ PR+    +P D+I  +IG  GK+I  I E
Sbjct: 557 ALQQAHEARTTILDLINECI-DGPAEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQE 615

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGTV I+S      E A+ +I  I +  VPE  + Y G+VVK   FGAFV
Sbjct: 616 DTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 729


>gi|87123698|ref|ZP_01079548.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9917]
 gi|86168267|gb|EAQ69524.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9917]
          Length = 691

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/673 (42%), Positives = 409/673 (60%), Gaps = 18/673 (2%)

Query: 36  GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95
           G+T VL T     S ++G DF PL  +Y+ER YA G+IPG ++RRE RP E   LISR+I
Sbjct: 5   GDTSVLVTATRS-SGREGIDFLPLICDYEERLYAAGRIPGSFMRREGRPPERATLISRLI 63

Query: 96  DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155
           DR +RPLF    +++ Q++   M  D      V+++  AS A +L+G+PF GP+   +V 
Sbjct: 64  DRPMRPLFPNWLRDDLQIVATCMSLDERVPADVLAVTGASMATLLAGIPFHGPMAAVRVG 123

Query: 156 YINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214
            +   +VLNP   E ++G LDL V+GT + V+MVE  ANQL E  V++AI FG+     +
Sbjct: 124 LLGDDFVLNPSYREIERGDLDLVVAGTPEGVVMVEAGANQLPEQDVIEAIDFGYEAVCEL 183

Query: 215 IEAISKLAKMCAKEPIVI-----DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
           I+A  ++ K    E ++      D+   S LE++ S+ I E L+   F   K  R  ++D
Sbjct: 184 IKAQQEILKQAGIEQVIPPAPEPDATLPSYLEKQCSKSIGEVLK--HFEQSKAERDAKLD 241

Query: 270 DLKKKMVSYFSS--------EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSET 321
            ++                 +  S N   + + F+ +  K++R  +L    R+DGR  + 
Sbjct: 242 AIRASTAETIQGLKEDDPVRQAVSANSKALPATFKALTKKLMRQQILKDGKRVDGRGLDE 301

Query: 322 VRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           VR ISA  G+L +R HGS LF RG TQ +   TLGT  D Q +D L+ +    ++ HYNF
Sbjct: 302 VRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSTEKTYLHHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   M +P RREIGHG LA RAI PVLP    FPY +R+VSE+  S+GS+SM +
Sbjct: 362 PPYSVGETKPMRSPGRREIGHGALAERAILPVLPAKDTFPYVVRVVSEVLSSNGSTSMGS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCGS+LALMDAGVP+  PV+G AMGL+K+GD+  IL+DI G ED LG MDFKVAGTD GI
Sbjct: 422 VCGSTLALMDAGVPLKSPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVAGTDKGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+QMDMKI G++ + +  A+ QA+  RLHIL +M + +   R  L    PR+    I P
Sbjct: 482 TALQMDMKITGLAVSTVAEAVNQARPARLHILEKMMQAIDTPREGLSPHAPRLLSFRIDP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           + I  VIG GG+ I+GI E+T  K++I+D G V IAS   A  + A+++I  +T      
Sbjct: 542 ELIGTVIGPGGRTIKGITERTNTKIDIEDSGIVTIASHDGAAADEAQKIIEGLTRKVNEG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +++ G + +++  GAFV     ++G++HISQLS  RV K  DVVK GD V V++ + D+R
Sbjct: 602 EVFSGAITRIIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVVKVGDEVTVRVREIDNR 661

Query: 681 GKIKLSMKVVDQN 693
           G+I L+++ V QN
Sbjct: 662 GRINLTLRGVPQN 674


>gi|224283646|ref|ZP_03646968.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140799|ref|ZP_07802992.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
 gi|313133309|gb|EFR50926.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
          Length = 887

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 296/714 (41%), Positives = 432/714 (60%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  D + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           A+ M+E  A + +  ++ D          +  G    KP I+ I + A+   KE    ++
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICE-AQNELKEKAAKET 256

Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           KDF    E        + ++  EDL  +  I EK  R  +I ++K+ +    ++E +  +
Sbjct: 257 KDFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMD 316

Query: 288 ----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 317 DAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG 
Sbjct: 377 GETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 437 LAEKAIVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 497 MGLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           ALQQA   R  IL+ +++ + +   ++ E+ PR+    +P D+I  +IG  GK+I  I E
Sbjct: 557 ALQQAHEARTTILDLINECI-DGPAEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQE 615

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGTV I+S      E A+ +I  I +  VPE  + Y G+VVK   FGAFV
Sbjct: 616 DTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 729


>gi|237709532|ref|ZP_04540013.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           9_1_42FAA]
 gi|237724873|ref|ZP_04555354.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D4]
 gi|229436611|gb|EEO46688.1| polyribonucleotide nucleotidyltransferase [Bacteroides dorei
           5_1_36/D4]
 gi|229456588|gb|EEO62309.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           9_1_42FAA]
          Length = 711

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 435/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++  +  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           D ++MVE E  ++SE  +L A+   H      CK  +E + ++     +E          
Sbjct: 185 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +R +C+             K+ R    D ++ +  + ++ E      
Sbjct: 235 YCHEENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ+
Sbjct: 295 TLIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K
Sbjct: 415 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR HILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + 
Sbjct: 533 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 592

Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I++    G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +
Sbjct: 593 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 701


>gi|288921719|ref|ZP_06415986.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EUN1f]
 gi|288346891|gb|EFC81201.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EUN1f]
          Length = 729

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/702 (40%), Positives = 430/702 (61%), Gaps = 33/702 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++ ETGR+ARQ+ G+V+A  G+T+VL+     RS K+  DFFPLTV+ +ER YA G+I
Sbjct: 19  RTVRFETGRLARQAAGSVVAYLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D E+   VV++ A
Sbjct: 79  PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPETLYDVVAINA 138

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186
           ASA+ ML+GLPF GP+   +V +++G+++  P   E ++ + D+ V+G      +  A++
Sbjct: 139 ASASTMLAGLPFSGPIGATRVGFVDGEWIAFPTHAELERATFDMVVAGRVLEDGSDVAIM 198

Query: 187 MVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE----PI 230
           MVE EA               +E+VV   +       + +  A S+LA   AK     P+
Sbjct: 199 MVEAEATPGTVGLLAGGSPAPTEEVVAAGLEAAKPAIRELCRAQSELAAGAAKPQRDFPL 258

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            +D    + + E ++  + E+L  +  I  K  R  +++ ++   V   S +    ++ E
Sbjct: 259 FVDYH--ADVLESLTAAVGEELAAALRIAGKAEREAELERVRVLAVEKVSGQFEGRDK-E 315

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I   +  +  K+VR+ ++   VR+DGR +  +R++SA+V  + R HGS+LF RG+TQ + 
Sbjct: 316 IGPAYRALTKKLVRSRIVADGVRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQILG 375

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA+ 
Sbjct: 376 VTTLAMLRMEQTVDTLNPERTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+++G
Sbjct: 436 PVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIQEG 495

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA+  RL 
Sbjct: 496 DAFVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPASVLAGALQQARAARLT 555

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M++ +     ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ ++DD
Sbjct: 556 ILEVMAEAIGAPD-EMSTHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614

Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           GT+ I ++     E AR  I +I +  +PEV + Y G +VK+ +FGAFV     +DGL+H
Sbjct: 615 GTIYIGAADGTSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGKDGLLH 674

Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +S+L      +RV K  DV+  G  + V++ + D RGKI L+
Sbjct: 675 VSKLKQLAGGKRVEKVEDVLSVGQKLQVEITEIDARGKISLA 716


>gi|86742236|ref|YP_482636.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. CcI3]
 gi|123764534|sp|Q2J735|PNP_FRASC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86569098|gb|ABD12907.1| Polyribonucleotide nucleotidyltransferase [Frankia sp. CcI3]
          Length = 729

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/702 (40%), Positives = 431/702 (61%), Gaps = 33/702 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++ ETGR+A+Q+ G+ +A  G+T+VL+     +  K+  DFFPLTV+ +ER YA G+I
Sbjct: 19  RTVRFETGRLAKQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D ++   VV++ A
Sbjct: 79  PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAINA 138

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186
           ASA+  LSGLPF GP+   +V +++G+++  P   E  + + D+ V+G      +  A++
Sbjct: 139 ASASTTLSGLPFTGPIGATRVGFVDGEWIAFPTHAELARATFDMVVAGRVIEDGSDVAIM 198

Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE----PI 230
           MVE EA   + +++         + +  G    KP I     A S+LA + AK     P+
Sbjct: 199 MVEAEATPGTVELLAHGAPAPTEEVVAAGLEAAKPAIRELCRAQSELAALAAKPAREFPV 258

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            ID  D   + + +S  I ++L  +  IP K  R  ++D +++      +S+     E E
Sbjct: 259 FIDYHD--DVLDALSAAIGDELSAALRIPGKAERENELDRVRQLAAEKVASQFEG-REKE 315

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I + +  +  K+VR+ ++ + VR+DGR +  +R +SA+V  + R HGS+LF RG+TQ + 
Sbjct: 316 IGAAYRALTKKLVRSRIVTESVRIDGRSTTEIRALSAEVDYIPRVHGSALFERGETQILG 375

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA+ 
Sbjct: 376 VTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+   
Sbjct: 436 PVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIHAD 495

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA+  RL 
Sbjct: 496 DSYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLAAALQQARGARLA 555

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+ M++ +  S  ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ ++DD
Sbjct: 556 ILDVMAEAIG-SPDEMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614

Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           GT+ I +      E+AR  I +I +  +PEV + Y G +VK+ +FGAFV     RDGL+H
Sbjct: 615 GTIYIGAVDGPSAESARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGRDGLLH 674

Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +S+L T    +RV K  DV+  G  + V++ + D RGKI LS
Sbjct: 675 VSKLKTLSGGKRVEKVEDVLTVGQKLQVEITEIDSRGKISLS 716


>gi|302335751|ref|YP_003800958.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
 gi|301319591|gb|ADK68078.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
          Length = 743

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/704 (41%), Positives = 431/704 (61%), Gaps = 42/704 (5%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T E +  G+   LETG +A+Q+ G  L + GE+ V  TVV  +  K+  DFFPLTV++ E
Sbjct: 5   THEFDLFGKHYTLETGELAKQATGECLVSCGESTVNVTVVVSKERKN-YDFFPLTVDFVE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGGYL+RE+RP+E   L +R+IDR IRP F + ++NE Q++   +  D  + 
Sbjct: 64  KMYAVGRIPGGYLKREARPSEKATLTARLIDRPIRPSFPEGFRNEVQIVAMPLVADQVNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
              +S++ ASAA+ + G+PFEGP+   +V  D   G++++NP  +E D   LDL ++G+ 
Sbjct: 124 VDTISVMGASAAMTVGGVPFEGPLACVRVGRDVETGEFIVNPSYEERDASDLDLELAGSA 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             + M+E  A ++SED +L A+ FG        EAI   A  C ++ +      F+K+E+
Sbjct: 184 TFISMLEAGAKEVSEDDMLAAMAFGQ-------EAI---AAFCEEQRVF-----FAKVEQ 228

Query: 243 EMSQMIKEDLRVSCFIPE--------------------KYVRCKQIDDLKKKMVSYFSS- 281
               ++  +  +   +PE                    K  R  +++ LK+ + + FS  
Sbjct: 229 ANGSIVAREYVLDEPVPEVHERVFAHFDEMRAALTDADKLARMGKVEALKEAIRAEFSED 288

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           E   W+   I    + ++   +R ++++   R+DGR +  VR +  +   L R HGS LF
Sbjct: 289 EQLQWDRA-IPVELKSLEKHAMRRMVVECGERVDGRSATEVRPLMVKPDYLPRVHGSGLF 347

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG TQ + + TLG   + Q +D++       ++ HYNF P  TGE  RMGAP RREIGH
Sbjct: 348 QRGQTQVLSIATLGMLNEWQRLDTIEPVDGKRYIHHYNFPPFCTGETGRMGAPKRREIGH 407

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PV+P   +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVP+++PV+G
Sbjct: 408 GSLAERALLPVIPSEDEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPLARPVSG 467

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           +AMGL+++    ++L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL
Sbjct: 468 VAMGLIQEEGKTVVLTDIQGLEDFLGDMDFKVCGTVKGITAMQMDNKATGLTPEILRQAL 527

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QA  GR+HIL  M + +   R    E  P++  + IP D+IR+VIG GGKVIRGI + T
Sbjct: 528 MQAHEGRMHILEAMLEQIPAPRESTKESAPQIISIQIPTDKIRDVIGSGGKVIRGIQDDT 587

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           GA ++I +DGTV IA +  A  EA+ E I++I  VPE  + Y G+VV +  FGAFV    
Sbjct: 588 GATIDIQEDGTVFIAGTGGAAGEAS-ERIKAIVKVPEAGEEYTGRVVGIQPFGAFVELLP 646

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HIS+++  RV K  DV+  GD V V++++ D++GKI L
Sbjct: 647 GKDGLLHISRVAQGRVDKVEDVLSIGDEVKVRVIEVDEKGKISL 690


>gi|265754741|ref|ZP_06089793.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           3_1_33FAA]
 gi|263234855|gb|EEZ20423.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           3_1_33FAA]
          Length = 728

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 435/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 23  VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 81

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 82  KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 141

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++  +  +DL V+ T 
Sbjct: 142 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMVAATY 201

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           D ++MVE E  ++SE  +L A+   H      CK  +E + ++     +E          
Sbjct: 202 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 251

Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +R +C+             K+ R    D ++ +  + ++ E      
Sbjct: 252 YCHEENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 311

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ+
Sbjct: 312 TLIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 371

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 372 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 431

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K
Sbjct: 432 LKGQIP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 489

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 490 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 549

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR HILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + 
Sbjct: 550 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 609

Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I++    G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +
Sbjct: 610 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 669

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 670 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 718


>gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
 gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
          Length = 714

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  INGQ+V+NP  ++ +Q  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 185 ENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +  +C+             K+ R    D ++++  + FS E      
Sbjct: 235 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ+
Sbjct: 295 ALIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 415 LKGQIP--ANYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I   D+ G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 593 IEEVDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701


>gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 716

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  D+ ++  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E N++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 185 ENIMMVEGEMNEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +  +C+             K+ R    D ++++  + FS E      
Sbjct: 235 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ+
Sbjct: 295 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 415 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NTGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
              ID+ G ++IA ++   IE A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 593 IEEIDNIGRIEIAGTNKKCIEDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701


>gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL1A]
 gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. NATL1A]
          Length = 722

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/707 (41%), Positives = 420/707 (59%), Gaps = 20/707 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR +KL TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTKSVSFDGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKS-SGREGVDFLPLMCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +++G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVIDSKDF 237
            V+MVE  ANQLSE  V++AI FG+     +I A  ++ K         K P  ID    
Sbjct: 183 GVVMVEAGANQLSEQDVIEAIDFGYEAITELINAQKEVLKESGIKQEMPKAP-EIDDTIS 241

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEG 289
           + L++  ++ I E L+   F   K  R  +I+++K  + +            +  S N  
Sbjct: 242 TYLDKNCTKSISEVLK--NFDQTKEERDNKIEEIKISISAKIDGLKDDNAVKKSLSLNNK 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQA 348
            + + ++ +  K++R  ++ +  R+DGR+   VR I A   +L  R HGS+LF RG TQ 
Sbjct: 300 LLENSYKALTKKLMREQIIKEGKRVDGRELNEVRAIEADAAVLPNRVHGSALFQRGLTQV 359

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +   TLGT  D Q +D L+      ++ HYNF P + GE   M  P RRE+GHG LA RA
Sbjct: 360 LSTATLGTPSDAQEMDDLNPNTDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERA 419

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP    FPY LR+VSE+  S+GS+SMA+VCGS+LALMDAGVP+  PV G AMGL+K
Sbjct: 420 LIPVLPAKDTFPYVLRVVSEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIK 479

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+    +  A+ QA   R
Sbjct: 480 EGKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPIETIGEAINQALPAR 539

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
            HIL +M   +   +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+
Sbjct: 540 THILGKMLDAIETPKDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIE 599

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G V IAS   A  E A+ +I  +T      +I+ G + +++  GAFV     ++G++H
Sbjct: 600 DGGIVTIASHDGAAAEEAQRIIEGLTRKVHEGEIFPGSITRIIPIGAFVEILPGKEGMIH 659

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ISQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN G
Sbjct: 660 ISQLSEARVEKVEDVVKVGDQVTVRVREIDNRGRINLTLRGVSQNGG 706


>gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL2A]
 gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A]
          Length = 722

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/707 (41%), Positives = 420/707 (59%), Gaps = 20/707 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR +KL TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTKSVSFDGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKS-SGREGVDFLPLMCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +++G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------KEPIVIDSKDF 237
            V+MVE  ANQLSE  V++AI FG+     +I A  ++ K         K P  ID    
Sbjct: 183 GVVMVEAGANQLSEQDVIEAIDFGYEAITELINAQKEVLKESGIKQEMPKAP-EIDDTIS 241

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEG 289
           + L++  ++ I E L+   F   K  R  +I+++K  + +            +  S N  
Sbjct: 242 TYLDKNCTKSISEVLK--NFDQTKEERDNKIEEIKISISAKIDGLKDDNAVKKSLSLNNK 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQA 348
            + + ++ +  K++R  ++ +  R+DGR+   VR I A   +L  R HGS+LF RG TQ 
Sbjct: 300 LLENSYKALTKKLMREQIIKEGKRVDGRELNEVRAIDADAAVLPNRVHGSALFQRGLTQV 359

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +   TLGT  D Q +D L+      ++ HYNF P + GE   M  P RRE+GHG LA RA
Sbjct: 360 LSTATLGTPSDAQEMDDLNPNTDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERA 419

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP    FPY LR+VSE+  S+GS+SMA+VCGS+LALMDAGVP+  PV G AMGL+K
Sbjct: 420 LIPVLPAKDTFPYVLRVVSEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIK 479

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+    +  A+ QA   R
Sbjct: 480 EGKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPIETIGEAINQALPAR 539

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
            HIL +M   +   +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+
Sbjct: 540 THILGKMLDAIETPKDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIE 599

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G V IAS   A  E A+ +I  +T      +I+ G + +++  GAFV     ++G++H
Sbjct: 600 DGGIVTIASHDGAAAEEAQRIIEGLTRKVHEGEIFPGSITRIIPIGAFVEILPGKEGMIH 659

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ISQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN G
Sbjct: 660 ISQLSEARVEKVEDVVKVGDQVTVRVREIDNRGRINLTLRGVSQNGG 706


>gi|111225112|ref|YP_715906.1| polynucleotide phosphorylase/polyadenylase [Frankia alni ACN14a]
 gi|123142666|sp|Q0RDT1|PNP_FRAAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|111152644|emb|CAJ64385.1| polynucleotide phosphorylase, has polyadenylase activity [Frankia
           alni ACN14a]
          Length = 729

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/703 (40%), Positives = 430/703 (61%), Gaps = 34/703 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++ ETGR+ARQ+ G+ +A  G+T+VL+     +  K+  DFFPLTV+ +ER YA G+I
Sbjct: 19  RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D ++   VV++ A
Sbjct: 79  PGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAINA 138

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186
           ASA+  LSGLPF GP+   +V Y++G+++  P   E  + + D+ V+G      +  A++
Sbjct: 139 ASASTTLSGLPFTGPIGATRVGYVDGEWIAFPTHAELARATFDMVVAGRVVEDGSDVAIM 198

Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE-----P 229
           MVE EA   + +++         + +  G    KP I     A S+LA +  K      P
Sbjct: 199 MVEAEATPGTVELIAGGAPAPTEEVVAAGLEAAKPAIRELCRAQSELASLAGKAATREFP 258

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
           + ID  D   + E +S  + ++L  +  I  K  R  ++D +++      +++     E 
Sbjct: 259 VFIDHHD--DVLEALSAAVGDELSAALRIAGKSERENELDRVRQLAAEKVAAQFEG-REK 315

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI + +  +  K+VR+ ++ + VR+DGR +  +R++SA+V  + R HGS+LF RG+TQ +
Sbjct: 316 EIGAAYRALTKKLVRSRIVTEGVRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQIL 375

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 376 GVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERAL 435

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV  
Sbjct: 436 LPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVHA 495

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            D ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA+  RL
Sbjct: 496 DDAYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLASALQQARGARL 555

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL+ M++ +  S  ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ ++D
Sbjct: 556 AILDVMAEAIG-SPDEMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVED 614

Query: 590 DGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DGT+ I ++     E AR  I +I +  +PEV + Y G +VK+ +FGAFV     RDGL+
Sbjct: 615 DGTIYIGAADGTSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGRDGLL 674

Query: 648 HISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           H+S+L T    +RV K  DV+  G  + V++ + D RGKI LS
Sbjct: 675 HVSKLKTLSGGKRVEKVEDVLTVGQKLQVEITEIDARGKISLS 717


>gi|333029627|ref|ZP_08457688.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
           DSM 18011]
 gi|332740224|gb|EGJ70706.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
           DSM 18011]
          Length = 713

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/706 (40%), Positives = 438/706 (62%), Gaps = 28/706 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIEL-GDGRTITLETGKLAKQADGAVMLRMGNTMMLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ RRE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V   +G++++NP  ++ ++  +D+ V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFHGPISEVRVARTDGKFIINPTFEQLEKADMDIMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  IE    +     +E       +  
Sbjct: 185 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQIELAEAVGSTVKRE------YNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + + E      +         K+ R    + +K++  + F+ E     E  I 
Sbjct: 239 ENDEDLRKAVHEACYEKAYAVAASGNANKHERFDAFEAIKEEFKAQFTEEELEEKEALIN 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  VR I ++V  L   HGS++F RG+TQA+  V
Sbjct: 299 KYYHDVEKEAMRRSILDEGKRLDGRKTTQVRPIWSEVDCLPGPHGSAVFTRGETQALCTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RRE+GHG LA RA+  +
Sbjct: 359 TLGTKSDEKIIDDVLCHGKERFLLHYNFPPFSTGEARPQRGVGRREVGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P+   +PY +R++S+I ES+GSSSMATVCG +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IPE--NYPYVIRVISDILESNGSSSMATVCGGTLALMDAGVQIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSFDILEKALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL+++ + L   R  L    PR+E M IP + I  +IG GGK+I+ + E+TGA + I++ 
Sbjct: 537 ILDKILETLDAPRTDLKPHAPRIEKMTIPKEFIGAIIGPGGKIIQNMQEETGATITIEET 596

Query: 590 ---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
              +G+++I++++   I+ A  MI++I  VPEV ++Y G+V  +M +GAF+ F   +DGL
Sbjct: 597 EAGEGSIEISATNKKSIDDAVRMIKAIVAVPEVGEVYTGKVRSIMPYGAFIEFLPGKDGL 656

Query: 647 VHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +HIS++   R+ K  D  + E D + VKL+D D + GK KLS KV+
Sbjct: 657 LHISEIEWRRLDKVEDAGIHENDEIEVKLIDIDRKTGKFKLSHKVL 702


>gi|229827407|ref|ZP_04453476.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
           49176]
 gi|229788345|gb|EEP24459.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
           49176]
          Length = 697

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/692 (40%), Positives = 418/692 (60%), Gaps = 15/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++  R+A+Q++GA L  YG+TVVL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDVDRVAKQANGAALMHYGDTVVLSTCTASEKPREGIDFFPLSVEYEEKQY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   VM  D   SP +
Sbjct: 67  AVGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPTCSPEL 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
            +M+ ++ A  +S +PF+GP    QV  I+G++V+NP   E   S L L V+ T++ V+M
Sbjct: 127 TAMLGSAIATAISDVPFDGPCATTQVGLIDGEFVINPSNAEMANSALKLTVASTKEKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  A+++ E  +++AI   H   + +I  I K+   C K        +   + EE+   
Sbjct: 187 IEAGADEIPEAKMIEAIYKAHEVNQEIIVFIEKIVAECGKPK---SEYERYAVPEELFTA 243

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           IKE     ++  + F  EK +R + I  +  K+  +F +E+  W      +V++  Q K 
Sbjct: 244 IKEIVTPDEMEKAVFTDEKQIREENISAIMDKLTEHF-AENEEWLSFLPDAVYQ-YQKKT 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L    R DGR+   +R ++A+  ++ R HGS++F RG TQ   + TL    + Q 
Sbjct: 302 VRKMILKDYKRPDGREMTQIRALAAETDIIPRVHGSAMFTRGQTQICNITTLAPLSEVQK 361

Query: 363 VDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           VD L+  +    ++ HYNF   + GE      P RREIGHG LA RA+ PVLP   +FPY
Sbjct: 362 VDGLNAEETYKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIILSDI 479
            +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV     DD+++L+DI
Sbjct: 422 AIRTVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGDTDDDYVLLTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + K  R+ I++  M   
Sbjct: 482 QGLEDFFGDMDFKVTGTTDGITAIQMDIKIHGLTREIVEGAIARTKEARMFIMDTCMKPA 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R  + E+ P++E + I PD+I  V+G  GK I  I+++TG K++I D+G V I  +
Sbjct: 542 IAEPRASVNEYAPKIEQIKIDPDKIGEVVGQKGKTINAIIDKTGVKIDITDEGNVSICGT 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            + +I  A+E+IR I    E  KIY G+V+ + +FGAFV F   ++G+VHIS+++ ER+ 
Sbjct: 602 DIDKINEAKEIIRMIVTEFEEGKIYTGKVISIKEFGAFVEFAPGKEGMVHISKVAKERIN 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              DV+  GD V    L  D  G+I  S+K V
Sbjct: 662 NVEDVLTLGDIVKTICLGKDKMGRISFSIKDV 693


>gi|124006215|ref|ZP_01691050.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
           23134]
 gi|123988139|gb|EAY27797.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
           23134]
          Length = 712

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 300/705 (42%), Positives = 444/705 (62%), Gaps = 24/705 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           V T EI  A GR + LETG++ARQ++G+V+ T G+T++LATVV  +  KD  DF PL+V+
Sbjct: 5   VITKEIVLADGRKITLETGKLARQANGSVVVTMGQTMLLATVVSQKEAKDDVDFLPLSVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           +QER  A GK+PGG+L+RE R +  EIL  R++DR++RPLF   Y  +TQ+ I ++  D 
Sbjct: 65  FQERFAAAGKVPGGFLKREGRLSNYEILTCRLVDRAMRPLFPGDYHADTQINIFLISSDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E     ++ +AAS+A+ +S +PF GP    +V  +NG++V+NP ++  ++  LD+ ++ T
Sbjct: 125 EVPADALAALAASSAVSVSDIPFNGPTAEVRVARVNGEFVINPSVEAIEEADLDIMLAAT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKL 240
            D+VLMVE E  ++SE  +LDAI FGH   K + +A  +L A+  A E       D  K 
Sbjct: 185 LDSVLMVEGEMQEVSEQDMLDAIRFGHEVIKTLCQAQKELEAEAGATEK---REYDHEKH 241

Query: 241 EEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + E+ Q + ++L    +      I  K  R +  + +K + +     +H   +   +   
Sbjct: 242 DPELEQRLYDELYEKAYKVAQQQISNKSERSEAFNVIKDEFIDSLPEDHE-VDLYLVKQY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +  I+ K  R + L  + R+DGRD   +R I  +V  L  THGS+LF RG+TQ++  +TL
Sbjct: 301 YGKIKKKACRDLALKDRKRIDGRDFSEIRPIWGEVNYLPATHGSALFTRGETQSLTTLTL 360

Query: 355 GTREDEQYVD--SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           GT+ DE ++D  +  GTQ+  FM+HYNF   +TGEV      SRREIGHG LA RA+  +
Sbjct: 361 GTKLDELFIDNATFKGTQK--FMLHYNFPGFSTGEVKPNRGASRREIGHGNLAYRALKGM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP+    PYT+RIVS+I ES+GSSSMATVC  ++ALMD G+ I  PV+GIAMGL+ D  D
Sbjct: 419 LPKDEDNPYTIRIVSDIMESNGSSSMATVCAGTMALMDGGISIKAPVSGIAMGLISDESD 478

Query: 473 ---FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
              + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QA+ GRL
Sbjct: 479 PENYAVLSDILGDEDHLGDMDFKVTGTRDGITACQMDIKMEGLSYDILTKALAQAREGRL 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI-- 587
           HIL+++ +++  +   L    PR   + I  D I  VIG GGK+++ I +++GA V I  
Sbjct: 539 HILDKIEEIIPSTNSDLKPHAPRSTTVVIEKDMIGAVIGPGGKIVQLIQKESGATVVIEE 598

Query: 588 -DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            D+ G V I ++    ++ A EM++ I  VP V ++Y+G+V  +M FGAFV F   ++GL
Sbjct: 599 KDEHGHVNIFANDRESMDKAHEMVKQIIAVPTVGEVYEGKVKSIMPFGAFVEFLPGKEGL 658

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +HIS++  ER+ K   V++ G+ + VKL+D D R GK +LS K +
Sbjct: 659 LHISEIKWERIEKMDGVLESGEEITVKLIDVDKRSGKYRLSRKAL 703


>gi|119025278|ref|YP_909123.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154486675|ref|ZP_02028082.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
           L2-32]
 gi|187470939|sp|A1A008|PNP_BIFAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118764862|dbj|BAF39041.1| polynucleotide nucleotidyl transferase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084538|gb|EDN83583.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
           L2-32]
          Length = 892

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 301/726 (41%), Positives = 437/726 (60%), Gaps = 42/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  VV
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  E++   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            + E    I + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 EDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQAK  R  IL  +++ + +   ++  + PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E TGA++ I+DDGTV I+S      E A+E+I  I +  VPE  + Y G+VVK   FGAF
Sbjct: 615 EDTGAEIAIEDDGTVYISSEGGEAAEKAKEIIDQIANPHVPEAGETYNGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFED 734

Query: 692 QNTGKP 697
           Q +  P
Sbjct: 735 QESSAP 740


>gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides
           distasonis ATCC 8503]
 gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7]
 gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
 gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides
           distasonis ATCC 8503]
 gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
          Length = 746

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/696 (41%), Positives = 435/696 (62%), Gaps = 26/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV      TV+LATV   +    G DF PL V Y+E+  A G+
Sbjct: 14  GRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V I +   D E  P  ++ +
Sbjct: 74  FPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFSADGEDLPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V   +G+Y++NP   E ++  +D+ V+ T D ++MVE E
Sbjct: 134 AASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMVAATIDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++ E  +L+AI   H   K   +A  +L++ C K    +  +++    E     +++D
Sbjct: 194 MNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK----LVKREY--CHEVNDDELRKD 247

Query: 252 LRVSCFIPE---------KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301
           +   C+            K+ R +  + + ++  + FS E  +  + E++   + D++ +
Sbjct: 248 VHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIGRYYHDVEKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+
Sbjct: 308 AMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEK 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       F++HYNF P +TGE        RREIGHG LA RA+  ++P    +PY
Sbjct: 368 MIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRMIPD--NYPY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
            +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G ++ ILSDI
Sbjct: 426 VVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGTNYAILSDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+HIL ++ +  
Sbjct: 486 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEAQ 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIA 596
            E+R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA V+ID+    G ++I+
Sbjct: 546 PEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEVDGVGKIEIS 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            ++ A I+AA + I++I  VPE+ ++Y+G++  +M +GAFV F   +DGL+HIS++  +R
Sbjct: 606 GTNKATIDAAVKAIKAIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLLHISEIDWKR 665

Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +       +KEGDTV VKL+D D + GK KLS KV+
Sbjct: 666 LETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVL 701


>gi|313905717|ref|ZP_07839077.1| polyribonucleotide nucleotidyltransferase [Eubacterium
           cellulosolvens 6]
 gi|313469424|gb|EFR64766.1| polyribonucleotide nucleotidyltransferase [Eubacterium
           cellulosolvens 6]
          Length = 715

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/696 (39%), Positives = 418/696 (60%), Gaps = 15/696 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  T  +E AGR L ++ GR+ +Q++G     YG+T +L T    +  ++G DFFPL+V 
Sbjct: 14  NYKTYSMELAGRTLSVDIGRVGKQANGCAFMHYGDTTLLCTATASKQPREGVDFFPLSVE 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++E+ YAVGK PGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+  +   VM  D 
Sbjct: 74  FEEKMYAVGKFPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
              P VV+M+ +S A  +S +PF+GP    Q+  I+G++V+NP  ++  + +L L V+ T
Sbjct: 134 ACDPEVVAMLGSSLATAISDIPFDGPCAATQIGMIDGEFVINPGYEQKAESTLALTVAST 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           ++ V+M+E  A ++ E  +++AI       K VI    ++   C KE     S +   + 
Sbjct: 194 REKVIMIEAGAEEIPEAKMIEAIYLADETNKKVIAFFDQIVAECGKEK---HSYESCAIP 250

Query: 242 EEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           EE+   IKE     ++ V+ F  EK VR   I  + +K+   F +++  W      +V++
Sbjct: 251 EELFAAIKEIVPPAEMEVAVFTDEKQVREANIAAVTEKLQEAF-ADNEEWLAILPEAVYQ 309

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
             Q K VR ++L  + R DGR    +R ++A+V ++   HGS++F RG TQ   V+TL  
Sbjct: 310 -YQKKTVRKMILKDQKRPDGRAVRQIRPLAAEVDVIPHVHGSAMFTRGQTQICDVITLAP 368

Query: 357 REDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             + Q V+ L     +  +M  YNF   + GE      P RREIGHG LA RA+ PVLP 
Sbjct: 369 LSEAQKVEGLDPFITKKRYMHQYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPT 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDF 473
             +FPY +R VSE  ES+GS+S A+VC SS+ALM AGVPI KPVAGI+ GLV     DD+
Sbjct: 429 EEEFPYAIRAVSETFESNGSTSQASVCASSMALMAAGVPIKKPVAGISCGLVTGDTDDDY 488

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K  R +IL 
Sbjct: 489 LVLTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAISRCKDAREYILT 548

Query: 534 E-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           E M K ++  R  + E+ P++E M I PD+I  V+G  GK I  I+ +TG K++IDDDGT
Sbjct: 549 EVMEKAIAAPRESVNEYAPKIESMKIDPDKIGEVVGKQGKTINEIIARTGVKIDIDDDGT 608

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V +  +  A+++ A + I  IT   E  ++ KG VV + +FGAFV F   ++G+VHIS++
Sbjct: 609 VSVCGTDRAKMDEAEKYIEIITMNFEEGQVLKGTVVSIKEFGAFVEFAPGKEGMVHISKI 668

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + ER+    D++  GD V V  L  D  G++  S+K
Sbjct: 669 AKERINHVEDILTLGDVVKVVCLGKDRMGRLSFSIK 704


>gi|224023647|ref|ZP_03642013.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
           18228]
 gi|224016869|gb|EEF74881.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
           18228]
          Length = 719

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIEL-GDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  REKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  +  ++  +D+ V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDIMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E  ++SE  +L A+ F H      CK  +E + ++ K   +E          
Sbjct: 185 ENIMMVEGEMKEVSEQDLLAAMKFAHEAIKVHCKAQMELMEEVGKTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCFI----------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +  +C+             K+ R    + +  +  + F+ E      
Sbjct: 235 YCHEENDEELRKAVHDACYAKAYAIAESGNKNKHEREDAFNAICDEFKAQFTEEELEEKG 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +V  L   HGSS+F RG+TQ+
Sbjct: 295 PMIDRYYHDVEKEAMRRCILDEGKRLDGRATTDIRPIWCEVSPLPGPHGSSIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKLDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P+   +PY +R+VS+I ES+GSSSMATVC  +LALMDAGVPI KPV+GIAMGL+K
Sbjct: 415 LKGQIPE--NYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K  G++ +I+  AL QAK+
Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKCDGLTYDILEKALLQAKQ 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILGKLTECIAEPRADLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I   D  G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  +M +GAFV F   +
Sbjct: 593 IEEVDGVGRIEIAGTNKKCIDDAVRLIKGIVAVPEVGEVYTGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETIEEANLKEGDEIEVKLMDIDPKTGKFKLSHKVL 701


>gi|212692847|ref|ZP_03300975.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
 gi|212664636|gb|EEB25208.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
          Length = 728

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/709 (40%), Positives = 434/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 23  VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 81

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 82  KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFSADGI 141

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++  +  +DL V+ T 
Sbjct: 142 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMVAATY 201

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           D ++MVE E  ++SE  +L A+   H      CK  +E + ++     +E          
Sbjct: 202 DNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 251

Query: 239 KLEEEMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +R +C+             K+ R    D ++ +  + ++ E      
Sbjct: 252 YCHEENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKG 311

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ+
Sbjct: 312 TLIDRYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQS 371

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 372 LTSVTLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRA 431

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P    +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K
Sbjct: 432 LKGQIP--TGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIK 489

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 490 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKE 549

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR HILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + 
Sbjct: 550 GREHILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATIT 609

Query: 587 IDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I++    G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +
Sbjct: 610 IEETDGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGK 669

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 670 DGLLHISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVL 718


>gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
 gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
          Length = 714

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/709 (40%), Positives = 433/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  INGQ+V+NP  ++ +Q  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 185 ENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +  +C+             K+ R    D ++++  + FS E      
Sbjct: 235 YCHEVNDEELRKAVHNACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ+
Sbjct: 295 ALIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P    +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 415 LKGQIP--VNYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 I---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I   D+ G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 593 IEEVDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701


>gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
 gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
          Length = 746

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/696 (41%), Positives = 434/696 (62%), Gaps = 26/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV      TV+LATV   +    G DF PL V Y+E+  A G+
Sbjct: 14  GRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V I +   D E  P  ++ +
Sbjct: 74  FPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFSADGEDLPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V   +G+Y++NP   E ++  +D+ V+ T D ++MVE E
Sbjct: 134 AASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMVAATIDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++ E  +L+AI   H   K   +A  +L++ C K    +  +++    E     +++D
Sbjct: 194 MNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK----LVKREY--CHEVNDDELRKD 247

Query: 252 LRVSCFIPE---------KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301
           +   C+            K+ R +  + + ++  + FS E  +  + E++   + D++ +
Sbjct: 248 VHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIGRYYHDVEKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+
Sbjct: 308 AMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEK 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       F++HYNF P +TGE        RREIGHG LA RA+  ++P    +PY
Sbjct: 368 MIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRMIPD--NYPY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
            +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G ++ ILSDI
Sbjct: 426 VVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGTNYAILSDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+HIL ++ +  
Sbjct: 486 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEAQ 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIA 596
            E+R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA V+ID+    G ++I+
Sbjct: 546 PEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEVDGVGKIEIS 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            ++ A I+AA + I+ I  VPE+ ++Y+G++  +M +GAFV F   +DGL+HIS++  +R
Sbjct: 606 GTNKATIDAAVKAIKGIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLLHISEIDWKR 665

Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +       +KEGDTV VKL+D D + GK KLS KV+
Sbjct: 666 LETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVL 701


>gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
 gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
          Length = 746

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/696 (41%), Positives = 434/696 (62%), Gaps = 26/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV      TV+LATV   +    G DF PL V Y+E+  A G+
Sbjct: 14  GRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V I +   D E  P  ++ +
Sbjct: 74  FPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFSADGEDLPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V   +G+Y++NP   E ++  +D+ V+ T D ++MVE E
Sbjct: 134 AASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMVAATIDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++ E  +L+AI   H   K   +A  +L++ C K    +  +++    E     +++D
Sbjct: 194 MNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK----LVKREY--CHEVNDDELRKD 247

Query: 252 LRVSCFIPE---------KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAK 301
           +   C+            K+ R +  + + ++  + FS E  +  + E++   + D++ +
Sbjct: 248 VHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIGRYYHDVEKE 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+
Sbjct: 308 AMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEK 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       F++HYNF P +TGE        RREIGHG LA RA+  ++P    +PY
Sbjct: 368 MIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRMIPD--NYPY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
            +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G ++ ILSDI
Sbjct: 426 VVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKGTNYAILSDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+HIL ++ +  
Sbjct: 486 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILEAQ 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIA 596
            E+R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA V+ID+    G ++I+
Sbjct: 546 PEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEVDGVGKIEIS 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            ++ A I+AA + I+ I  VPE+ ++Y+G++  +M +GAFV F   +DGL+HIS++  +R
Sbjct: 606 GTNKATIDAAVKAIKGIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLLHISEIDWKR 665

Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +       +KEGDTV VKL+D D + GK KLS KV+
Sbjct: 666 LETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVL 701


>gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 737

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/699 (40%), Positives = 430/699 (61%), Gaps = 33/699 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +K+ETG++A+Q+DGAV  T G TV+LATV          DF PL V+Y+E+  AVG+
Sbjct: 14  GRTIKVETGKLAKQADGAVTVTMGNTVLLATVCAAADAAPDCDFMPLQVDYKEKYSAVGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE + ++ EIL SR++DR++RPLF   Y  E  V I +   D    P  ++ +
Sbjct: 74  FPGGFTRREGKASDYEILTSRLVDRALRPLFPADYHAEVFVNITLFSADGVDMPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AAS+AL +S +PFEGP+   +V  ING++++NP  ++     +D+ V+ T D ++MVE E
Sbjct: 134 AASSALAVSDIPFEGPISEVRVARINGEFLINPTYEQVANADIDMMVAATIDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
            +++ E  +L+AI   H     +C+  +E    + K+  +          +   EE    
Sbjct: 194 MDEVQEADMLEAIKVAHEAIKKQCQAQLELSEAVGKLVKR----------TYCHEENDDA 243

Query: 248 IKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++D+   C+            K  R    + L ++  + FS E  +  +  I   + D+
Sbjct: 244 LRQDVHDKCYAKAYAIATSGTSKQERTASFEALIEEYKAQFSEEDLAAKKSMIARYYHDV 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ 
Sbjct: 304 EKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVTLGTKA 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +    +  F++HYNF P +TGE     A  RREIGHG LA RA+  ++P   +
Sbjct: 364 DEKLVDDVLCRCKERFLLHYNFPPFSTGEARPQRATGRREIGHGNLAFRALKRMIPD--E 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIIL 476
           +PY +R++S+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+ +  G ++ +L
Sbjct: 422 YPYVVRVISDILESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISENKGTNYAVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QA+ GR+HIL ++ 
Sbjct: 482 SDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALAQAREGRMHILGKIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTV 593
           + +   R  L    PR+E + +P + I  +IG GGK+I+GI E++GA V+   ID +G V
Sbjct: 542 EAMPSVRPDLKPQAPRIEKLRVPKEFIGAIIGPGGKIIQGIQEKSGAVVSIEEIDGEGHV 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +I+S++   ++AA  M+R I  +PEV ++Y G+V  VM +G FV F   ++GL+HIS++ 
Sbjct: 602 EISSANKESLDAALAMVRGIVAMPEVGEVYDGKVTSVMPYGCFVEFLPGKEGLLHISEIE 661

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             R  K  D  + EGD + ++LL+ D + GK KLS +V+
Sbjct: 662 WRRFEKIEDTNLHEGDNIRIQLLEIDPKTGKFKLSHRVL 700


>gi|302670339|ref|YP_003830299.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           proteoclasticus B316]
 gi|302394812|gb|ADL33717.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           proteoclasticus B316]
          Length = 696

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/704 (40%), Positives = 417/704 (59%), Gaps = 23/704 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T  +E AGR LK+E G++ +Q++G     YG+T VL T       +DG DFFPL+V Y
Sbjct: 2   VKTYSMELAGRTLKVEIGKVGKQANGCAFMQYGDTTVLCTATASAKPRDGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVGK PGGY +RE +P+EN IL SR+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 62  GEKFYAVGKFPGGYNKREGKPSENAILTSRVIDRPMRPLFPKDYRNDVTIETMVMAVDPQ 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P +V+M+ AS ++ +S +PF+GP    Q+  I+G+ ++NP  ++ + G L L V+   
Sbjct: 122 CRPELVAMLGASVSVSISDIPFDGPCAMTQIGMIDGELIVNPTQEQWNTGDLKLTVASVG 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             V+M+E  AN++ E+ + +AI   H+    +IE    +     K      S     + E
Sbjct: 182 QKVIMIEAGANEIPEEKMKEAIYKAHDVNLQIIEFFKGIVAEVGKPKHEYTS---CAVPE 238

Query: 243 EMSQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295
           E+   IK     E++  + F  +K  R   I D+  ++   F +++  W    GE +  +
Sbjct: 239 ELFAAIKEVVPPEEMEKAVFTDDKQTREANIADITDRLTEKF-ADNEEWLAILGEAIYQY 297

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E    K VR ++L    R DGR+ + +R +SA+V L+ R HGS++F RG TQ   VVTL 
Sbjct: 298 E---KKTVRKMILKDHKRPDGREIKQIRPLSAEVDLIPRVHGSAMFTRGQTQICDVVTLA 354

Query: 356 TREDEQYV---DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
              + Q V   DS +  +R  ++  YNF   + GE      P RREIGHG LA RA+ PV
Sbjct: 355 PLSEAQKVEGLDSFAADKR--YVHQYNFPAYSVGETKVSRGPGRREIGHGALAERALLPV 412

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DG 470
           LP   +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV     
Sbjct: 413 LPSVEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGDTD 472

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           DDF++L+DI G ED  G MDFKV GT  GITA+QMD+KI G+++ I+  A+ Q +  R  
Sbjct: 473 DDFVVLTDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTKPIVETAIAQCREARFF 532

Query: 531 ILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           I++E MSK ++E R ++ ++ P++  + I P++I +V+G  GK I  I+ +TG K++I D
Sbjct: 533 IMDECMSKAIAEPRKEVSKYAPKIVSIQIDPEKIGDVVGQRGKTINEIIARTGVKIDITD 592

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V +      +I  A  M+  I    E  +++ G+VV + +FGAFV F   ++G+VHI
Sbjct: 593 DGKVSVCGEDQDKINEAVNMVNIIVSDFEKGQVFTGKVVSIKEFGAFVEFAPGKEGMVHI 652

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           S++S ER+    DV+  GDTV V  L  D  G+I  SMK V QN
Sbjct: 653 SKISRERIEHVEDVLTLGDTVTVVCLGKDKMGRISFSMKDVAQN 696


>gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
 gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
          Length = 714

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/705 (40%), Positives = 433/705 (61%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 185 ENIMMVEGEMDEVSERDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKREYC------HE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVHDACYEKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAPLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--- 587
           IL ++++ L+E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I   
Sbjct: 537 ILGKITECLAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+ G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701


>gi|291456054|ref|ZP_06595444.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
           DSM 20213]
 gi|291382463|gb|EFE89981.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
           DSM 20213]
          Length = 949

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 297/718 (41%), Positives = 433/718 (60%), Gaps = 47/718 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 65  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 124

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 125 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 184

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 185 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 244

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 245 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAAGLEAAKPFIKVICEAQDELKKIAAKE-- 302

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    + E 
Sbjct: 303 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 359

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 360 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 419

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 420 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 479

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 480 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 539

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 540 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 599

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+    +P ++I  VIG  GK+I 
Sbjct: 600 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 658

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      E A+ +I SI +  VPE  + Y G+VVK   F
Sbjct: 659 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 718

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GAFV+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 719 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 776


>gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           8102]
 gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8102]
          Length = 721

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 293/704 (41%), Positives = 419/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG-REGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y RRE RP E   L +R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYQRREGRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLIVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE   NQL E  V++AI FG+     +I+A  +L K         E    D+   +
Sbjct: 183 GVVMVEAGGNQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGIEQVKPETPTQDTTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--------SSWNEGE 290
            LE++ ++ I E L+   F   K  R K +D +K +     +           ++ N   
Sbjct: 243 YLEKQCTKAISEVLKK--FDQTKDERDKALDAIKAEAAEAIAGLKEDDAIRVATASNSKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAI 349
           + + F+ +   ++R  +L    R+DGR  + VR ISA  G+L +R HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKTLMRQQILKDGKRVDGRALDEVRAISALAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L  +    ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPSTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GDD  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+    +  A+ QA+  RL
Sbjct: 481 GDDIRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKTIAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDTPREGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  + A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
 gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
          Length = 716

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  ++ ++  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFEQLEKADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 185 ENIMMVEGEMDEVSERDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +  +C+             K+ R    D ++++  + FS E      
Sbjct: 235 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ+
Sbjct: 295 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 415 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 473 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 533 GREYILSKITECIAEPHADLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 592

Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
              ID+ G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 593 IEEIDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 701


>gi|229818418|ref|ZP_04448699.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
           20098]
 gi|229784288|gb|EEP20402.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
           20098]
          Length = 893

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 294/714 (41%), Positives = 434/714 (60%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + T++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPQDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  P  D+ ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPTWDQRERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           A+ M+E  A + +  ++ D          +  G    KP I+ I + A+   KE    ++
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICE-AQNELKEKAAKET 256

Query: 235 KDFS-------KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           K+F        +L   + ++  +DL  +  I EK  R  +I ++K+ + +  ++E    +
Sbjct: 257 KEFQLFPEYTDELYSRIDEIAHKDLDEALTIAEKLPRQDRIKEIKEGVKATLANEFEDMD 316

Query: 288 EGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E    I + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 317 DAEKDKEIGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 376

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLSG Q   +M +Y   P +TGE  R+G+P RREIGHG 
Sbjct: 377 GETQILGVTTLNMLKMEQQLDSLSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 437 LAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 496

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 497 MGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAA 556

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           ALQQAK  R  IL  +++ + +   ++ EF PR+    +P D+I  VIG  GK+I  I E
Sbjct: 557 ALQQAKEARTTILEVINECI-DGPSEMSEFAPRIITTTVPVDKIGEVIGPKGKMINQIQE 615

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGTV I+S      E A+++I  I +  VPE  + Y G+VVK   FGAFV
Sbjct: 616 DTGAEIAIEDDGTVYISSEGGEAAEKAKQIIDQIANPHVPEAGETYNGKVVKTTSFGAFV 675

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+    + ER+    DV++EGDTV V +   DDRGKI L++
Sbjct: 676 NLTPGTDGLLHISQIRNLANGERIDAVEDVLQEGDTVEVVVQGVDDRGKISLAI 729


>gi|212716682|ref|ZP_03324810.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660386|gb|EEB20961.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
           16992]
          Length = 893

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 299/726 (41%), Positives = 438/726 (60%), Gaps = 42/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ ++SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTLISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA ++L  + AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQTELKNIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  E++   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDM 315

Query: 287 N----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +    E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQAK  R  IL  +++ + +   ++  + PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+++I  I +  VPE  + Y G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVFISSEGGDGAEKAKQIIEQIANPHVPEAGETYNGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFED 734

Query: 692 QNTGKP 697
           Q +  P
Sbjct: 735 QESSAP 740


>gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
 gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
          Length = 704

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/690 (40%), Positives = 424/690 (61%), Gaps = 36/690 (5%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +ETG  A+Q+DGAV+   G+T VL T V     +   DF PLTV+Y+E++ A GKIP
Sbjct: 13  PIIIETGHYAKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVDYREQSSAWGKIP 72

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+++RE +PT+ EIL+SR+IDR IRPLF + + ++  V    +  D +  P V+++  A
Sbjct: 73  GGFIKREGKPTDREILVSRVIDRPIRPLFPEGFSHDVVVTALTLSADDKYDPDVLAITGA 132

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEAN 193
           SAAL +S +PFEGP+ G ++  + G+ V NP  +E Q + L++ ++G++DA++MVE  A 
Sbjct: 133 SAALHISRIPFEGPIAGVRICRVEGRLVANPTYEERQKADLEIVMAGSKDAIVMVEGGAK 192

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----SKLEEEMSQMI 248
           ++ E+V+ +A+ FG    + ++ A  +L     +        D      ++L E  S  I
Sbjct: 193 EVDEEVLTEALYFGLEVIQDLLRAQEELRDKIGQPKASFQGLDLPEEIQNQLVEFCSPRI 252

Query: 249 KEDLRVS---------CFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           KE  ++            + E++++  QI +  K  VSY                ++ + 
Sbjct: 253 KESFQIQDKRERKSFQSKVLEEFLQTYQIPEELKFRVSY---------------QYKKLI 297

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +K++R ++L++  R+DGR  + +R I+ ++   +R HGS++F RG TQA   VTLG  E+
Sbjct: 298 SKLMRKMVLEEGRRIDGRGPKDIRPITIELHPFERPHGSAIFTRGQTQAFATVTLGAPEE 357

Query: 360 EQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q V+S+  G     FM+HYNF P +TGE    G P RREIGHG LA RA+ P++P   +
Sbjct: 358 AQMVESIYEGEVFKRFMLHYNFPPFSTGEARSWGPPRRREIGHGALAERALEPLIPPEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VS I ES+GS+SMATVC +SLAL DAGVP+ K  AGIAMGL+ +GD ++ILSD
Sbjct: 418 FPYIIRVVSNILESNGSTSMATVCAASLALFDAGVPMKKHAAGIAMGLIMEGDRYVILSD 477

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED LG MDFKVAGT  GIT++QMD+K+ G+ + IM  ALQQAK GRL+IL +M + 
Sbjct: 478 ILGDEDQLGDMDFKVAGTKDGITSVQMDIKVKGLKKEIMREALQQAKEGRLYILQKMYEA 537

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E R Q+  + P +EI+ IP D+   VIG GG+ +R   ++ G  V + + G V + S+
Sbjct: 538 IPEPRPQVSPYAPVIEIITIPEDKALVVIGPGGRNVRDWRDRLGVSVWVHEGGRVSLTST 597

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS--TER 656
           +   ++  +E I+++    EV K+Y+G+V +V  +G FV     + GL+H+  +    + 
Sbjct: 598 NREALQQVKEAIQNLVAEVEVGKVYEGKVTRVEPYGVFVEILPGKVGLMHVKDMEGFVKD 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V K   V   GD V VK+ + DD G+ KL+
Sbjct: 658 VRKAYSV---GDKVKVKVYELDDLGRPKLT 684


>gi|262281984|ref|ZP_06059753.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
           2_1_36FAA]
 gi|262262438|gb|EEY81135.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
           2_1_36FAA]
          Length = 668

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/637 (40%), Positives = 394/637 (61%), Gaps = 7/637 (1%)

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP 
Sbjct: 2   YAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQ 61

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVL 186
           + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+ 
Sbjct: 62  MAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAIN 121

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+ 
Sbjct: 122 MVESGAKELSEDIMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEIV 181

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQA 300
                DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++ 
Sbjct: 182 AAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEH 241

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    + 
Sbjct: 242 AEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGET 301

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +FP
Sbjct: 302 QIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEFP 361

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+  G ++ +L+DI 
Sbjct: 362 YAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISYGSNYTVLTDIQ 421

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   + 
Sbjct: 422 GLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATIP 481

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS  
Sbjct: 482 APRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSDQ 541

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R    
Sbjct: 542 DAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNNV 601

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            DVV+ GD V VK++  D +G++  SMK +     KP
Sbjct: 602 EDVVQIGDEVDVKVIKIDAKGRVDASMKALLPRPPKP 638


>gi|296454907|ref|YP_003662051.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296184339|gb|ADH01221.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 914

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 296/718 (41%), Positives = 433/718 (60%), Gaps = 47/718 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    + E 
Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHQDLNEALSIAEKLPRQDRIHEIKEHVREVLADEF 312

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+    +P ++I  VIG  GK+I 
Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 611

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      + A+ +I SI +  VPE  + Y G+VVK   F
Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GAFV+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|225351118|ref|ZP_03742141.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158574|gb|EEG71816.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 887

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 299/726 (41%), Positives = 438/726 (60%), Gaps = 42/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA ++L  + AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKNIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  E++   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDM 315

Query: 287 N----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +    E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVMPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQAK  R  IL  +++ + +   ++  + PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 SALQQAKEARTTILEVINECI-DGPAEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+++I  I +  VPE  + Y G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVFISSEGGDGAEKAKQIIDQIANPHVPEAGETYNGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFED 734

Query: 692 QNTGKP 697
           Q +  P
Sbjct: 735 QESSAP 740


>gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 774

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/692 (41%), Positives = 429/692 (61%), Gaps = 19/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +K+ETG++A+Q+DGAV  T G TV+LATV   +    G DF PL V Y+E+  A+G+
Sbjct: 45  GRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGR 104

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE + ++ EIL  R++DR++RPLF   Y  E  V + +   D E  P  ++ +
Sbjct: 105 FPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFSADGEDMPDALAGL 164

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  ++G+Y++NP  ++ ++  +DL V  T D ++MVE E
Sbjct: 165 AASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMVGATMDNIMMVEGE 224

Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245
            +++ E  +L+ I   H     +CK  +E    + K+  +E    V D     K+ +E  
Sbjct: 225 MDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVNDEDLRKKVHDECY 284

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               E   V+     K+ R +  + + ++  + ++ E  +     I   + D++ + +R 
Sbjct: 285 ARAYE---VATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYYHDVEKEAMRR 341

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+ VD 
Sbjct: 342 AILDEGKRLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDD 401

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++P    +PY +R+
Sbjct: 402 VLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIP--TDYPYVVRV 459

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDE 483
           +S+I ES+GSSSMATVC  +LAL DAGV I KPV+GIAMGL+ +  G ++ ILSDI GDE
Sbjct: 460 ISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAILSDILGDE 519

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QAK+GRLHIL ++ +   E+R
Sbjct: 520 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEAQPETR 579

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600
             L    PR+E M I  + I  VIG GGK+I+GI E++GA VNI   D  G ++I+ ++ 
Sbjct: 580 DDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGVIEISGTNK 639

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+AA  MI+ I  +PEV + Y G++  VM +G FV F   ++GL+HIS++  +R    
Sbjct: 640 PCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEVDWKRFETI 699

Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            D  +KEG+++ VKLLD D + GK KLS KV+
Sbjct: 700 EDTNLKEGESINVKLLDIDPKTGKFKLSRKVL 731


>gi|325955410|ref|YP_004239070.1| polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
           16922]
 gi|323438028|gb|ADX68492.1| Polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
           16922]
          Length = 721

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/708 (40%), Positives = 445/708 (62%), Gaps = 34/708 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG+ A+Q+DG+V+   G+T++LATVV ++   +G DF PLTV+Y+E+ YA G+
Sbjct: 15  GREISIETGKYAKQADGSVIVRMGDTMLLATVVANKEANEGVDFLPLTVDYREKFYAGGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE++P+++E+L  R++DR +RP+F + +  E QV+I+++ +D +  P  ++ +
Sbjct: 75  IPGNFFRREAKPSDDEVLTMRLVDRVLRPMFPEDFHAEVQVMISLISYDEKVMPEALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ ++ +PF   +  A+V  +NG+ ++NP  ++ +Q  +D+ V  ++++V+MVE E
Sbjct: 135 AASAAIAITDIPF-TLISEARVIRLNGELMINPSREQLEQADIDIMVGASKESVVMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  +LDAI F H E K  IEA  +LA+   K       +++S   E   + I+E 
Sbjct: 194 MEEISEREMLDAIQFAHEEIKKQIEAQERLAEKVGKS---FPKREYS--HENHDEEIRE- 247

Query: 252 LRVSCFIPEKYVRC-------KQIDDLKKKMVSYFSSEHSSWNEGEIVSV-------FED 297
            +V  F  +KY           + +D  + +V  F +++   +E E+  V       F D
Sbjct: 248 -KVWNFGYQKYYDIAKHPSDKHERNDKFEAIVEEFLAQYEE-DEEELARVTPFVKTYFHD 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q + VR ++L++ +R+DGRD +T+R I  +V +L   HGSS+F RG+TQA+  +TLG+ 
Sbjct: 306 VQKEAVRQLILEEGIRLDGRDPKTIRPIWTEVDILPGAHGSSVFTRGETQALAALTLGSS 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD +       F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P+  
Sbjct: 366 RDANLVDGVVLNHEERFFLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALTKMIPEDN 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
             PY +R+VSE+ ES+GSSSMATVC  +LALMDAG+PI KPV+GIAMGL+ D     + +
Sbjct: 426 --PYVIRLVSEVLESNGSSSMATVCAGTLALMDAGIPIKKPVSGIAMGLITDTKSGKWTV 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  IM  AL+QA+ GRLHIL+++
Sbjct: 484 LSDILGDEDHLGDMDFKVTGTKDGITACQMDIKVQGLSMEIMEKALEQAREGRLHILDKL 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592
           ++ L+  R  L    P++ +M IP + I  VIG GGK+I+ + ++T   + + ++   G 
Sbjct: 544 TETLATPRPNLKPNAPKIALMEIPKEFIGAVIGPGGKIIQELQKETDTVIVLTEEENFGR 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V+I   +  +I+     I+ I  VPEV   Y   V  +  FGAFV      +GLVHIS++
Sbjct: 604 VEINGVNQEKIDQVIARIKQIAFVPEVGATYDAVVKSIKPFGAFVEISKGIEGLVHISEI 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697
             +R+ K  D +   D + VK L +DD+ K+KLS K +    + T KP
Sbjct: 664 EHKRLEKVEDALGINDKIQVKFLGYDDKKKMKLSRKALLPKPERTEKP 711


>gi|23336421|ref|ZP_00121639.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Bifidobacterium longum DJO10A]
 gi|23466099|ref|NP_696702.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           NCC2705]
 gi|189440526|ref|YP_001955607.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           DJO10A]
 gi|81753609|sp|Q8G447|PNP_BIFLO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702620|sp|B3DPX0|PNP_BIFLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23326831|gb|AAN25338.1| PnpA [Bifidobacterium longum NCC2705]
 gi|189428961|gb|ACD99109.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           DJO10A]
 gi|291516498|emb|CBK70114.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum F8]
          Length = 913

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 298/730 (40%), Positives = 438/730 (60%), Gaps = 49/730 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    + E 
Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+   ++P ++I  VIG  GK+I 
Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      E A+ +I  I +  VPE  + Y G+VVK   F
Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSF 671

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           GAFV+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++  
Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPG 731

Query: 690 VD--QNTGKP 697
            +  +N  +P
Sbjct: 732 FEDQENNARP 741


>gi|227546434|ref|ZP_03976483.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227213091|gb|EEI80970.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 913

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 298/730 (40%), Positives = 438/730 (60%), Gaps = 49/730 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWRLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    + E 
Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+   ++P ++I  VIG  GK+I 
Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      E A+ +I  I +  VPE  + Y G+VVK   F
Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSF 671

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           GAFV+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++  
Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPG 731

Query: 690 VD--QNTGKP 697
            +  +N  +P
Sbjct: 732 FEDQENNARP 741


>gi|225374866|ref|ZP_03752087.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
           16841]
 gi|225213249|gb|EEG95603.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
           16841]
          Length = 697

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/700 (40%), Positives = 425/700 (60%), Gaps = 23/700 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+  Q++GA L  YGET VL+TVV     +DG DFFPL+V ++E+ Y
Sbjct: 7   MELAGRTLTVDIGRVCAQANGAALIKYGETTVLSTVVASDKPRDGVDFFPLSVEFEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E  P V
Sbjct: 67  AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECRPEV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187
           V M+ ++    +S +PF+GP    Q+  ++G++++NP     D+G L L V+ T+  V+M
Sbjct: 127 VGMIGSALVTTMSDIPFDGPCAMTQMGMVDGEFIVNPSQKVWDEGDLQLTVASTRTKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEE 242
           +E  AN++ E+ +++AI   H+  + +I+ + K+   C K         I  + F+ ++E
Sbjct: 187 IEAGANEIPEEKMIEAIYKCHDVNQTIIQFMDKIVAECGKPKHEYTSCAIPDEMFAAMKE 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
            ++    ED+  + F  EK  R + I ++  K+   F ++   W    GE V  +   Q 
Sbjct: 247 IVT---PEDMENAVFTDEKQKREENIREITDKLAEAF-ADKEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 359

Query: 361 QYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           Q +D L     T+R  ++  YNF   + GE      P RREIGHG LA +A+  VLP   
Sbjct: 360 QKIDGLDANITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALVAVLPSEE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S +ALM AGVPI   VAGI+ GLV     DD+I+
Sbjct: 418 EFPYAIRAVSETFESNGSTSMASTCASCMALMAAGVPIKSMVAGISCGLVTGDTDDDYIV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E 
Sbjct: 478 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK +S+ R ++G + P++  + I P++I +V+G  GK I  I+ +T  K++I D+G V 
Sbjct: 538 MSKAISKPRKEVGAYAPKIIQIQIDPNKIGDVVGQKGKTINEIIARTDVKIDITDEGAVS 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +   ++  A +MI++IT   E  +I+ G VV + +FGAF+ F   ++G+VHIS++S 
Sbjct: 598 VCGTDKEKMAEAIDMIKTITTDFEEGQIFTGTVVSIKEFGAFIEFAPGKEGMVHISKISK 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           ER+ +  DV+  GD V V  L  D  G+I  SMK V +N 
Sbjct: 658 ERINRVEDVLTLGDKVTVVCLGKDKMGRISFSMKDVPENN 697


>gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
 gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
          Length = 753

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/709 (40%), Positives = 436/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 43  VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 101

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 102 KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 161

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  ++ ++  +DL V  T 
Sbjct: 162 DMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFEQLEKADMDLMVGATY 221

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 222 ENIMMVEGEMDEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKRE---------- 271

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              E   + +++ +  +C+             K+ R    D ++++  + FS E      
Sbjct: 272 YCHEVNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKA 331

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ+
Sbjct: 332 PLIDRYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQS 391

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 392 LSTVTLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 451

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K
Sbjct: 452 LKGQIP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIK 509

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK 
Sbjct: 510 NAGEEKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKE 569

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + 
Sbjct: 570 GREYILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATIT 629

Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
              ID+ G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +
Sbjct: 630 IEEIDNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGK 689

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 690 DGLLHISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVL 738


>gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis W83]
 gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           W83]
          Length = 743

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/692 (41%), Positives = 429/692 (61%), Gaps = 19/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +K+ETG++A+Q+DGAV  T G TV+LATV   +    G DF PL V Y+E+  A+G+
Sbjct: 14  GRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE + ++ EIL  R++DR++RPLF   Y  E  V + +   D E  P  ++ +
Sbjct: 74  FPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFSADGEDMPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  ++G+Y++NP  ++ ++  +DL V  T D ++MVE E
Sbjct: 134 AASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMVGATMDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245
            +++ E  +L+ I   H     +CK  +E    + K+  +E    V D     K+ +E  
Sbjct: 194 MDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVNDEDLRKKVHDECY 253

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               E   V+     K+ R +  + + ++  + ++ E  +     I   + D++ + +R 
Sbjct: 254 ARAYE---VATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYYHDVEKEAMRR 310

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+ VD 
Sbjct: 311 AILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDD 370

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++P    +PY +R+
Sbjct: 371 VLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIP--TDYPYVVRV 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDE 483
           +S+I ES+GSSSMATVC  +LAL DAGV I KPV+GIAMGL+ +  G ++ ILSDI GDE
Sbjct: 429 ISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAILSDILGDE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QAK+GRLHIL ++ +   E+R
Sbjct: 489 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEAQPETR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600
             L    PR+E M I  + I  VIG GGK+I+GI E++GA VNI   D  G ++I+ ++ 
Sbjct: 549 DDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGVIEISGTNK 608

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+AA  MI+ I  +PEV + Y G++  VM +G FV F   ++GL+HIS++  +R    
Sbjct: 609 PCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEVDWKRFETI 668

Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            D  +KEG+++ VKLLD D + GK KLS KV+
Sbjct: 669 EDTNLKEGESINVKLLDIDPKTGKFKLSRKVL 700


>gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 743

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/692 (41%), Positives = 429/692 (61%), Gaps = 19/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +K+ETG++A+Q+DGAV  T G TV+LATV   +    G DF PL V Y+E+  A+G+
Sbjct: 14  GRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE + ++ EIL  R++DR++RPLF   Y  E  V + +   D E  P  ++ +
Sbjct: 74  FPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFSADGEDMPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  ++G+Y++NP  ++ ++  +DL V  T D ++MVE E
Sbjct: 134 AASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMVGATMDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMS 245
            +++ E  +L+ I   H     +CK  +E    + K+  +E    V D     K+ +E  
Sbjct: 194 MDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVNDEDLRKKVHDECY 253

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
               E   V+     K+ R +  + + ++  + ++ E  +     I   + D++ + +R 
Sbjct: 254 ARAYE---VATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYYHDVEKEAMRR 310

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+ VD 
Sbjct: 311 AILDEGKRLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDD 370

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++P    +PY +R+
Sbjct: 371 VLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIP--TDYPYVVRV 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDE 483
           +S+I ES+GSSSMATVC  +LAL DAGV I KPV+GIAMGL+ +  G ++ ILSDI GDE
Sbjct: 429 ISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAILSDILGDE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QAK+GRLHIL ++ +   E+R
Sbjct: 489 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEAQPETR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSL 600
             L    PR+E M I  + I  VIG GGK+I+GI E++GA VNI   D  G ++I+ ++ 
Sbjct: 549 DDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGVIEISGTNK 608

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+AA  MI+ I  +PEV + Y G++  VM +G FV F   ++GL+HIS++  +R    
Sbjct: 609 PCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEVDWKRFETI 668

Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            D  +KEG+++ VKLLD D + GK KLS KV+
Sbjct: 669 EDTNLKEGESINVKLLDIDPKTGKFKLSRKVL 700


>gi|300788163|ref|YP_003768454.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
           mediterranei U32]
 gi|299797677|gb|ADJ48052.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
           mediterranei U32]
          Length = 753

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 295/719 (41%), Positives = 434/719 (60%), Gaps = 36/719 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   E T++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 21  FGTRTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKDHFDFFPLTVDVEERMYA 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F+   +NE QV+I V   + +    V+
Sbjct: 81  AGRIPGAFFRREGRPSTDAILTCRLIDRPLRPSFTDGLRNEIQVVITVQSLNPDDPYDVL 140

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  ++GLPF GPV G +V  +  Q+V  P   + ++ + ++ V+G       A
Sbjct: 141 AINAASASTQIAGLPFSGPVGGVRVALVEDQWVAFPTWSQLEKATFNMVVAGRIVGDDVA 200

Query: 185 VLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKLAKMCAKE---- 228
           ++MVE E  + + D++          A+  G    KP I    EA  +LA + AK     
Sbjct: 201 IMMVEAEGTEHTLDLIAAGGKAPDEAAVAAGLEASKPFIKVLCEAQQQLADVAAKPTGEF 260

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +  +    + + ++ +  +DL  +  IP K  R    D++K  ++           E
Sbjct: 261 PVFLAYE--QDVYDAVAAIATDDLARALQIPGKQDRDAATDEVKAAVLEKIGLGEGEAFE 318

Query: 289 G---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
           G   EI   F+ +  K++R  +L +K+RMDGR    +R +SA+V ++ R HGS+LF RG+
Sbjct: 319 GRDKEIGGAFKALTKKIMRQRVLTEKIRMDGRGLTDIRSLSAEVAVIPRAHGSALFERGE 378

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 379 TQILGVTTLNMLRLEQQIDSLSPETHKRYMHHYNFPPFSTGETGRVGSPKRREIGHGMLA 438

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP+  +FPY +R VSE   S+GS+SM +VC S++AL +AGVP+  PVAGIAMG
Sbjct: 439 ERALVPVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMALYNAGVPLKAPVAGIAMG 498

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    ++ L+DI G ED LG MDFKVAGT   ITA+Q+D K+ GI   ++  AL
Sbjct: 499 LVSDEVDGETRYVALTDILGAEDALGDMDFKVAGTKDIITALQLDTKLDGIPSEVLAAAL 558

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  RL IL  +++ + +S  ++  ++PRV  + IP D+I  VIG  GK+I  I EQT
Sbjct: 559 KQAKDARLTILEVIAEAI-DSPDEMSPYSPRVTSVKIPVDKIGEVIGPKGKMINSITEQT 617

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ + ++     EAA ++I +I +  +P+V + + G VVK   FGAFV  
Sbjct: 618 GADISIEDDGTIYVGAADGPSAEAAIDLINAIANPQLPKVGERFLGTVVKTAAFGAFVSL 677

Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              +DGLVHIS+L   +R+AK  DVV  GD + V++ D D+RGKI L + V D    KP
Sbjct: 678 LPGKDGLVHISKLGNGKRIAKVEDVVNVGDKLRVEIADIDNRGKISL-IVVKDDEPAKP 735


>gi|315651726|ref|ZP_07904731.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
           DSM 3986]
 gi|315485981|gb|EFU76358.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
           DSM 3986]
          Length = 717

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/704 (40%), Positives = 431/704 (61%), Gaps = 24/704 (3%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +  +E AGR L+++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V 
Sbjct: 21  EFKSYSMELAGRILRVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVE 80

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGK+PGGY +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  D 
Sbjct: 81  YEEKMYAVGKMPGGYNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDP 140

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVS 179
           + SP + +M+ ++ A  +S +PF+GP    Q+  + G +V+NP  +E+Q     L L V+
Sbjct: 141 DCSPELTAMLGSAIATAISDIPFDGPCATTQIGMVGGFFVVNP--NEEQMAVSDLKLTVA 198

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D V+M+E  AN++ ++ +++AI    +  K +I  I K+     K+     S     
Sbjct: 199 STKDKVIMIEAGANEIPDEKMIEAIYKADSVNKEIIAFIDKIVAEVGKQK---HSYTAFT 255

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292
           + +E+S  I+E     ++  + F  EK +R + I  + +K+   F ++   W    GE V
Sbjct: 256 IPDELSTAIREIVPQDEMEKAVFTDEKQIREENIKAITEKLEEAF-ADKEEWLSLLGEAV 314

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             +   Q K VR ++L  + R DGR    +R ++A+V ++ R HGS++F RG TQ   VV
Sbjct: 315 YQY---QKKTVRKMILKDQKRPDGRAMTQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVV 371

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TL    + Q +D L+ ++     +H YNF   + GE      P RREIGHG LA RA+ P
Sbjct: 372 TLAPLAEAQKIDGLNQSETTKRYIHQYNFPSYSVGETRPSRGPGRREIGHGALAERALIP 431

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KD 469
           VLP   +FPY +R VSE  ES+GS+SMA+ C S +ALM AGVPI K VAGI+ GLV  + 
Sbjct: 432 VLPAPEEFPYAIRSVSETFESNGSTSMASTCSSCMALMAAGVPIKKMVAGISCGLVTGES 491

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            DD+++L+DI G ED  G MDFKV GTDSGITA+QMD+KI G++++I+  A+ +    R 
Sbjct: 492 DDDYVLLTDIQGLEDFFGDMDFKVTGTDSGITAIQMDIKIHGLTKDIVKGAIARCHEARD 551

Query: 530 HILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
            I+   M   ++E R ++ ++ P++  + I P +I +V+G  GK I  I+E TG K++I 
Sbjct: 552 FIMETCMKPCIAEPRKEISKYAPKIAQIQISPSKIGDVVGKQGKTINKIIEDTGVKIDIS 611

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +DG V ++ +  A I+ A ++IR IT   E   I +G+VV++++FGAFV     +DG+VH
Sbjct: 612 EDGLVSVSGTDQAMIDKAVDIIRGITIEIEAGMIMQGKVVRILEFGAFVELAPGKDGMVH 671

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           IS+LS  RV K  DVVK GD V VK++  D  +G+I LSMK  D
Sbjct: 672 ISKLSDRRVEKVEDVVKIGDEVTVKVIKVDAIKGRIDLSMKPSD 715


>gi|239620975|ref|ZP_04664006.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|322689964|ref|YP_004209698.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322691904|ref|YP_004221474.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|239516076|gb|EEQ55943.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|320456760|dbj|BAJ67382.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320461300|dbj|BAJ71920.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 913

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/718 (41%), Positives = 434/718 (60%), Gaps = 47/718 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    ++E 
Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLANEF 312

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+    +P ++I  VIG  GK+I 
Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 611

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      + A+ +I SI +  VPE  + Y G+VVK   F
Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GAFV+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|238924296|ref|YP_002937812.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875971|gb|ACR75678.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
           33656]
          Length = 718

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/700 (40%), Positives = 427/700 (61%), Gaps = 25/700 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A Q++GAV   YG+T VL+T       +DG DFFPL+V ++E+ Y
Sbjct: 29  MELAGRTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMY 88

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D E  P +
Sbjct: 89  SVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPEI 148

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+M+  + A+ +S +PF+GP    Q+  ++G++++NP   + D+G L L V+ T++ V+M
Sbjct: 149 VAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKEKVIM 208

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED +++AI   H+  + VI  + ++     K     +S     + E+M + 
Sbjct: 209 IEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYES---CAIPEQMFED 265

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---Q 299
           IK     E +  + F  EK  R + I  + +++   F+      NE  +  + E I   Q
Sbjct: 266 IKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFAD-----NEEYLAVLGEAIYQYQ 320

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    +
Sbjct: 321 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSE 380

Query: 360 EQYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            Q +D L     T+R  +M HYNF   + GE      P RREIGHG LA +A+ PVLP  
Sbjct: 381 IQKIDGLDANITTKR--YMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSI 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474
            +FPYT+R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DDF+
Sbjct: 439 EEFPYTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFL 498

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E
Sbjct: 499 VLTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDE 558

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R ++ E+ P++E + I P +I +V+G  GK I  I+++TG K++I DDG V
Sbjct: 559 VMSKAIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAV 618

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +  +    I  A +MI+ IT   E  +I +G VV + +FGAF+ F   ++G+VHIS+++
Sbjct: 619 SVCGTDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIA 678

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ER+ +  DV+  GD V V  L  D  G+I  SMK V ++
Sbjct: 679 KERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 718


>gi|256396976|ref|YP_003118540.1| polynucleotide phosphorylase/polyadenylase [Catenulispora
           acidiphila DSM 44928]
 gi|256363202|gb|ACU76699.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Catenulispora acidiphila DSM
           44928]
          Length = 737

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 305/724 (42%), Positives = 437/724 (60%), Gaps = 46/724 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   E T+VL+     +S KD  DFFPLTV+ +ER YA
Sbjct: 17  FGQRTVRFETGRLARQAAGSVVAYLDEETMVLSATTASKSPKDSLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VG+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  +M  + +    VV
Sbjct: 77  VGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  I  ++V  P   E      D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIQDRWVAFPTHTELADAVFDMVVAGRTLEDGDV 196

Query: 184 AVLMVELEANQLS------------EDVVLDAIIFGHNECKPVIEAI--------SKLAK 223
           A++MVE EA   +            E+VV D    G    KP I+A+        S+ AK
Sbjct: 197 AIMMVEAEATSQTVSLVAGGSTAPTEEVVAD----GLEAAKPFIKALCVAQQELASQAAK 252

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
             A+ P  +D +D   + E +S   K +L  +  I  K+ R +++D +K  +V   + + 
Sbjct: 253 ATAEFPRFLDYQD--DVLEAVSATAKNELSNALTIAGKHEREEELDRVKALVVEKLAQQF 310

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI   F  +  K+VR  ++  +VR+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 311 EG-REKEIGGAFRALTKKLVRERIIRDQVRIDGRGVRDIRPLSAEVEVVPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + + TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 370 GETQILGITTLNMLRMEQQLDTLNPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    DG  +++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLVSAEIDGKTEYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QAK  RLHIL+ M + +     ++ EF PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQAKDARLHILDVMMEAIDVPD-EMSEFAPRIISVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I +S+ A  EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGAEITIEDDGTIYIGASNGAAAEAARVTINQIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                RDGL+H+SQL      +RV    DVVK GD + V++ + D RGK+ L + V+   
Sbjct: 669 SLMPGRDGLLHVSQLKKLAGGKRVENVEDVVKVGDKLQVEIAEIDSRGKLSL-IPVLPDE 727

Query: 694 TGKP 697
             KP
Sbjct: 728 ESKP 731


>gi|315502540|ref|YP_004081427.1| guanosine pentaphosphate synthetase i/polyribonucleotide
           nucleotidyltransferase [Micromonospora sp. L5]
 gi|315409159|gb|ADU07276.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora sp. L5]
          Length = 789

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/704 (40%), Positives = 426/704 (60%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  ++  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   +V +++GQ+V  P L+E  + + D+ V+G      + A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARATFDMVVAGRTLADGEVA 199

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228
           ++MVE EA   +  ++ D         +  G    KP I     A S+LA++ AK     
Sbjct: 200 IMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSELAEVAAKPVSEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D +D   + + ++ + + D+  +  I  K  R + +D +K K+    +       E
Sbjct: 260 PVFLDYQD--DVYDAVADVARADVTEALKIAGKADREEALDRIKAKVAEELTGRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R +SA+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ VD+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQMVDTLSPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL+ M + + E+  ++ ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 HEARQTILDVMQRAI-EAPAEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA + I  I +  +P+V + + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVDRINGIANPTLPKVGERFLGTVVKTAAFGAFISLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDARGKIYL 719


>gi|302865980|ref|YP_003834617.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora aurantiaca ATCC
           27029]
 gi|302568839|gb|ADL45041.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora aurantiaca ATCC
           27029]
          Length = 796

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/704 (40%), Positives = 426/704 (60%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  ++  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   +V +++GQ+V  P L+E  + + D+ V+G      + A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARATFDMVVAGRTLADGEVA 199

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228
           ++MVE EA   +  ++ D         +  G    KP I     A S+LA++ AK     
Sbjct: 200 IMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSELAEVAAKPVSEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D +D   + + ++ + + D+  +  I  K  R + +D +K K+    +       E
Sbjct: 260 PVFLDYQD--DVYDAVADVARADVTEALKIAGKADREEALDRIKAKVAEELTGRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R +SA+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ VD+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQMVDTLSPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL+ M + + E+  ++ ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 HEARQTILDVMQRAI-EAPAEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA + I  I +  +P+V + + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVDRINGIANPTLPKVGERFLGTVVKTAAFGAFISLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDARGKIYL 719


>gi|309812542|ref|ZP_07706290.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Dermacoccus sp. Ellin185]
 gi|308433520|gb|EFP57404.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Dermacoccus sp. Ellin185]
          Length = 826

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 293/716 (40%), Positives = 437/716 (61%), Gaps = 39/716 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q++GAV+A   + T +L+T    +  K+  DFFPLTV+ +ER+YA
Sbjct: 18  FGTRTVRFETGRLAKQANGAVMAYLDDDTCLLSTTTASKQPKEHFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV+I V+  + +    V+
Sbjct: 78  AGKIPGSFFRREGRPSTDAILTCRLIDRPLRPAFKKGLRNEVQVVITVLAQNPDVQYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184
           ++  ASA+  +SGLPF GP+ G ++  I+GQ+V  P   D ++ + D+ V+G       A
Sbjct: 138 AINGASASTQISGLPFTGPIGGVRISLIDGQWVAFPNFSDIERSAFDMVVAGRIVGDDVA 197

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE E+ +             +E+VV + +       + + EA  +LAK  AKE    
Sbjct: 198 IMMVEAESTESTWNLVKNGTQAPTEEVVAEGLEAAKKFIRVLCEAQMELAKQAAKEVQDF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287
           P+ +D +D   + E +++   +    +  I  K  R  ++D++K  + +  + E   +  
Sbjct: 258 PVFLDYQD--DVYEAVAKDGTDQTAAAMTIAGKAERESKLDEIKDALKAELAGEGKPFEG 315

Query: 288 -EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ + F  +Q ++VR  +L  KVR+DGR    +R +SA+V +L R HGS++F RG+T
Sbjct: 316 RESEVSAAFRSLQKQLVRERILRDKVRIDGRGLADIRALSAEVEVLPRVHGSAIFERGET 375

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +DSLS   R  +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 376 QIMGVTTLNMLRMEQQIDSLSPRTRKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 435

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL
Sbjct: 436 RALMPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 495

Query: 467 VK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           V    DG+  +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL 
Sbjct: 496 VSAEIDGETQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPAQVLAGALT 555

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ + ++  ++  F PRV  + IP D+I  VIG  GK+I  I E TG
Sbjct: 556 QARDARLHILDVMNEAI-DAPDEMSPFAPRVLAVKIPVDKIGEVIGPKGKMINQIQEDTG 614

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A ++I+DDGTV I ++     EAAR  + +I +  +PEV + + G VVK   FGAFV   
Sbjct: 615 ADLSIEDDGTVYIGATDGPSAEAARNAVNAIANPQMPEVGERFLGTVVKTTTFGAFVSLL 674

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             +DGL+HIS++      +R+    DV+K G  V V+L + D RG  KLS+ VV++
Sbjct: 675 PGKDGLLHISEVRKLVGGKRIDAVEDVLKIGRKVQVELKEIDPRG--KLSLGVVEK 728


>gi|163814157|ref|ZP_02205549.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
 gi|158450606|gb|EDP27601.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
          Length = 731

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/694 (41%), Positives = 416/694 (59%), Gaps = 24/694 (3%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E AGR L ++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V Y+E+ Y+
Sbjct: 44  EIAGRMLTVDIGRVAAQANGAAFIKYGDTTVLSTCTASEKPRDGIDFFPLSVEYEEKLYS 103

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   VM  D E  P +V
Sbjct: 104 VGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPELV 163

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S A  +S +PF+GP    QV  I+G++++NP   + D+G L L V+ T   V+M+
Sbjct: 164 AMLGSSIATCISDVPFDGPCAMTQVGLIDGEFIINPTQKQWDEGDLKLTVASTSQKVIMI 223

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEE 243
           E  AN + E  +++AI   H+  + +I  I+++     K         +  + F+ ++E 
Sbjct: 224 EAGANIVPEAKMIEAIYMAHDINQDIIAFINEIVAEVGKPKHSYVSCAVPEELFAAIKEI 283

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED----IQ 299
           +     ED   + F  EK VR + I  + +K+   F +++  W     ++V  D     Q
Sbjct: 284 VPPAAMED---AVFSDEKQVREENIRQITEKLEEAF-ADNEEW-----LAVLPDAIYQYQ 334

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   V TL    +
Sbjct: 335 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLSE 394

Query: 360 EQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q VD L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +
Sbjct: 395 IQRVDGLDENVTTKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAERALLPVLPSEEE 454

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFIIL 476
           FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DD+I+L
Sbjct: 455 FPYAIRTVSETFESNGSTSMASTCSSCMSLMAAGVPIKAMVAGISCGLVTGDTDDDYIVL 514

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL I+   M
Sbjct: 515 TDIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARLFIMETCM 574

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++  R  + EF P+++ + I P++I  VIG  GK I  I+E+TG K++IDD+G + I
Sbjct: 575 KPAIAAPRPTVNEFAPKIKQIKIDPEKIGEVIGQRGKTINTIIEETGVKIDIDDEGRISI 634

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                A ++ A EMI  I +  EV K Y G+VVKV+D GA V     +DGL+HIS+LS +
Sbjct: 635 CGVEQAGMDKAIEMINMIVEPLEVGKNYHGKVVKVIDCGAIVSLAPNKDGLIHISKLSDK 694

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
           RVAK  DVV  GD V VK++  D+R G+I LS+K
Sbjct: 695 RVAKVEDVVNVGDEVDVKVIKIDERAGRISLSLK 728


>gi|291525068|emb|CBK90655.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale DSM
           17629]
          Length = 696

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/700 (40%), Positives = 427/700 (61%), Gaps = 25/700 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A Q++GAV   YG+T VL+T       +DG DFFPL+V ++E+ Y
Sbjct: 7   MELAGRTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D E  P +
Sbjct: 67  SVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPEI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+M+  + A+ +S +PF+GP    Q+  ++G++++NP   + D+G L L V+ T++ V+M
Sbjct: 127 VAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKEKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED +++AI   H+  + VI  + ++     K     +S     + E+M + 
Sbjct: 187 IEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYES---CAIPEQMFED 243

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---Q 299
           IK     E +  + F  EK  R + I  + +++   F+      NE  +  + E I   Q
Sbjct: 244 IKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFAD-----NEEYLAVLGEAIYQYQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    +
Sbjct: 299 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSE 358

Query: 360 EQYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            Q +D L     T+R  +M HYNF   + GE      P RREIGHG LA +A+ PVLP  
Sbjct: 359 IQKIDGLDANITTKR--YMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSV 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474
            +FPYT+R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DDF+
Sbjct: 417 EEFPYTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFL 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E
Sbjct: 477 VLTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDE 536

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R ++ E+ P++E + I P +I +V+G  GK I  I+++TG K++I DDG V
Sbjct: 537 VMSKAIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +  +    I  A +MI+ IT   E  +I +G VV + +FGAF+ F   ++G+VHIS+++
Sbjct: 597 SVCGTDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIA 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ER+ +  DV+  GD V V  L  D  G+I  SMK V ++
Sbjct: 657 KERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 696


>gi|213693120|ref|YP_002323706.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|257096682|sp|B7GNH2|PNP_BIFLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|213524581|gb|ACJ53328.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320459298|dbj|BAJ69919.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 914

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 295/718 (41%), Positives = 434/718 (60%), Gaps = 47/718 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    + E 
Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 493 AGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+   ++P ++I  VIG  GK+I 
Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      + A+ +I SI +  VPE  + Y G+VVK   F
Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GAFV+     DGL+HISQ+    + ER+    DV++EGDTV V +   DDRGKI L++
Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLREGDTVEVIVQGVDDRGKISLAI 729


>gi|312133835|ref|YP_004001174.1| pnp [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773126|gb|ADQ02614.1| PnP [Bifidobacterium longum subsp. longum BBMN68]
          Length = 913

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 297/730 (40%), Positives = 438/730 (60%), Gaps = 49/730 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AK+  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKK-- 255

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    + E 
Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHQDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+   ++P ++I  VIG  GK+I 
Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKGKMIN 611

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      E A+ +I  I +  VPE  + Y G+VVK   F
Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSF 671

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           GAFV+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++  
Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPG 731

Query: 690 VD--QNTGKP 697
            +  +N  +P
Sbjct: 732 FEDQENNARP 741


>gi|325859693|ref|ZP_08172823.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           CRIS 18C-A]
 gi|325482619|gb|EGC85622.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           CRIS 18C-A]
          Length = 742

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/699 (41%), Positives = 425/699 (60%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 64  YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADSVDQPDALAGF 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +P E P    +V  ING+YV++P  ++  +  +DL V  T+D ++MVE E
Sbjct: 124 AASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVGATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D    +EE+ + ++++
Sbjct: 184 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEELREQVRKE 241

Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298
              +C+        +K  R +  + +K      + + H+  +E        EI   F D+
Sbjct: 242 TYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEEKHAEIDRYFADV 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS+LF RG+T ++   TLGT+ 
Sbjct: 302 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKM 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD++       F++HYNF P  TGE        RREIGHG LA RA+   +P  A 
Sbjct: 362 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 420 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN ++
Sbjct: 480 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593
             ++E R ++    PR+  + IP + I  VIG GGK+I+ + E TGA + I++    G V
Sbjct: 540 DTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGATITIEETDGVGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I+SI  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 600 QVSAPNKDSIDAALGKIKSIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 659

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    D  +KEGD + VKLLD D + GK KLS +V+
Sbjct: 660 WKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 698


>gi|325268379|ref|ZP_08135011.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
           DSM 16608]
 gi|324989233|gb|EGC21184.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
           DSM 16608]
          Length = 751

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/699 (41%), Positives = 425/699 (60%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADSVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +P E P    +V  ING+YV++P  ++  +  +DL V  T+D ++MVE E
Sbjct: 133 AASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D    +EE+ + ++++
Sbjct: 193 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEELREQVRKE 250

Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298
              +C+        +K  R +  + +K      + + H+  +E        EI   F D+
Sbjct: 251 TYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEEKHAEIDRYFADV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS+LF RG+T ++   TLGT+ 
Sbjct: 311 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKM 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ +D++       F++HYNF P  TGE        RREIGHG LA RA+   +P  A 
Sbjct: 371 DEKMIDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN ++
Sbjct: 489 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593
             ++E R ++    PR+  + IP + I  VIG GGK+I+ + E TGA + ID+    G V
Sbjct: 549 DTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGAVITIDETDGVGKV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I++I  VPE+ +IY+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPNKESIDAALGKIKAIVAVPEIGEIYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    D  +KEGD + VKLLD D + GK KLS +V+
Sbjct: 669 WKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 707


>gi|317483033|ref|ZP_07942035.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915534|gb|EFV36954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 913

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/718 (41%), Positives = 433/718 (60%), Gaps = 47/718 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKE-- 255

Query: 231 VIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              +K+F    E        + ++  +DL  +  I EK  R  +I ++K+ +    + E 
Sbjct: 256 ---TKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEF 312

Query: 284 SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  ++ E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+
Sbjct: 313 TDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSA 372

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREI
Sbjct: 373 LFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREI 432

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PV
Sbjct: 433 GHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPV 492

Query: 460 AGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +
Sbjct: 493 AGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPAD 552

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQAK  R  IL  +++ + +   ++ EF PR+    +P ++I  VIG  GK+I 
Sbjct: 553 ILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTTVPVEKIGEVIGPKGKMIN 611

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA++ I+DDGTV I+S      + A+ +I SI +  VPE  + Y G+VVK   F
Sbjct: 612 QIQEDTGAEIAIEDDGTVFISSEGGDAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSF 671

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GAFV+     DGL+HISQ+    + ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 672 GAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|327312938|ref|YP_004328375.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           F0289]
 gi|326944531|gb|AEA20416.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           F0289]
          Length = 751

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/699 (41%), Positives = 425/699 (60%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADSVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +P E P    +V  ING+YV++P  ++  +  +DL V  T+D ++MVE E
Sbjct: 133 AASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D    +EE+ + ++++
Sbjct: 193 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEELREQVRKE 250

Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298
              +C+        +K  R +  + +K      + + H+  +E        EI   F D+
Sbjct: 251 TYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEEKHAEIDRYFADV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS+LF RG+T ++   TLGT+ 
Sbjct: 311 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKM 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD++       F++HYNF P  TGE        RREIGHG LA RA+   +P  A 
Sbjct: 371 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN ++
Sbjct: 489 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593
             ++E R ++    PR+  + IP + I  VIG GGK+I+ + E TGA + I++    G V
Sbjct: 549 DTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGATITIEETDGVGKV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I+SI  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPNKDSIDAALGKIKSIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    D  +KEGD + VKLLD D + GK KLS +V+
Sbjct: 669 WKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 707


>gi|291529163|emb|CBK94749.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale
           M104/1]
          Length = 696

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/700 (40%), Positives = 426/700 (60%), Gaps = 25/700 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A Q++G V   YG+T VL+T       +DG DFFPL+V ++E+ Y
Sbjct: 7   MELAGRTLTVDIGRVAAQANGTVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D E  P +
Sbjct: 67  SVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPEI 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V+M+  + A+ +S +PF+GP    Q+  ++G++++NP   + D+G L L V+ T++ V+M
Sbjct: 127 VAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKEKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ ED +++AI   H+  + VI  + ++     K     +S     + E+M + 
Sbjct: 187 IEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYES---CAIPEQMFED 243

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---Q 299
           IK     E +  + F  EK  R + I  + +++   F+      NE  +  + E I   Q
Sbjct: 244 IKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFAD-----NEEYLAVLGEAIYQYQ 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    +
Sbjct: 299 KKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSE 358

Query: 360 EQYVDSLSG---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            Q +D L     T+R  +M HYNF   + GE      P RREIGHG LA +A+ PVLP  
Sbjct: 359 IQKIDGLDANITTKR--YMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSV 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFI 474
            +FPYT+R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DDF+
Sbjct: 417 EEFPYTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFL 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E
Sbjct: 477 VLTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDE 536

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R ++ E+ P++E + I P +I +V+G  GK I  I+++TG K++I DDG V
Sbjct: 537 VMSKAIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +  +    I  A +MI+ IT   E  +I +G VV + +FGAF+ F   ++G+VHIS+++
Sbjct: 597 SVCGTDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIA 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ER+ +  DV+  GD V V  L  D  G+I  SMK V ++
Sbjct: 657 KERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 696


>gi|291302562|ref|YP_003513840.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290571782|gb|ADD44747.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 825

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 292/704 (41%), Positives = 425/704 (60%), Gaps = 39/704 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +   TGR+A+Q+ G+VL   G+TVVL+T    +  K+  DFFPLTV+ +ER YA G+I
Sbjct: 32  REITFSTGRLAKQAAGSVLVQLGDTVVLSTTAAGKHPKEHFDFFPLTVDVEERMYAAGRI 91

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH-VVSMV 132
           PG + RRE RP+E+ IL  R+IDR +RP F K  +NE QVI  V+  D E+ P+ VV+M 
Sbjct: 92  PGSFFRREGRPSEDAILTCRLIDRGLRPSFIKGLRNEVQVIETVLALD-EAHPYDVVAMN 150

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVL 186
            ASA+  LSGLP +GP+   +V  ING++V  P L++ +  + D+ V+G        A++
Sbjct: 151 GASASTALSGLPCQGPLGSTRVANINGEWVAFPTLEQLETATFDMVVTGRVVEGGDVAIM 210

Query: 187 MVELEANQLSEDVV--------LDAIIFGHNECKPVIEAISK----LAKMCAKE----PI 230
           MVE EA   + +++         + +  G    KPVI  + +    LA + AK     P+
Sbjct: 211 MVEAEATDKAVELIGGGSVAPTEEVVAAGLEAAKPVISELCRAQRELAGVAAKPAVEFPL 270

Query: 231 VIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
             +  D  F+++E E    +  +L     I +K  R  ++D +K  +V   + E     E
Sbjct: 271 FPEYGDDVFARVEAE----VGTELAAGLTIADKQEREAELDRIKAALVEKIAGEFEE-RE 325

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
           GEI S    +  K+VR  +L + VR+DGR +  +R +SA+V +L R HGS+LF RG+TQ 
Sbjct: 326 GEIGSALRSLTKKLVRRRVLTEGVRIDGRGTRDIRPLSAEVKILPRVHGSALFERGETQI 385

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS   +  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 386 MGVTTLNMLRMEQAIDTLSPVSKKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 445

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           I PVLP   +FPY +R VSE   S+GS+SM +VC S+++LM AGVP+  PVAGIAMGL+ 
Sbjct: 446 IVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLMAAGVPLKAPVAGIAMGLIS 505

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ ++DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  AL QA
Sbjct: 506 DEVDGKTEYVTITDILGAEDAFGDMDFKVAGTRNFVTALQLDTKLDGIPSDVLAGALSQA 565

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  I++ M++ ++E    + E  PRV  + +P D+I  VIG  G+ I  I E+TGA 
Sbjct: 566 YDARQAIMDVMAEAIAEPS-AMAETAPRVTTVKVPVDKIGMVIGPKGQTINSITEETGAD 624

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I +++    EAA  MI  I +  +P V   + G VVK   FGAF+     
Sbjct: 625 ISIEDDGTIYIGATTGPAAEAAVAMINGIANPTLPNVGDRFLGTVVKTAAFGAFISLVPG 684

Query: 643 RDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +R+ K  DV+  GD + V++ D D RGKI L
Sbjct: 685 RDGLLHISKIGDGKRIDKVEDVLNVGDKIEVEIADVDGRGKIYL 728


>gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
 gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
          Length = 737

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/692 (41%), Positives = 423/692 (61%), Gaps = 16/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V+   G+T++L TVV  +  K   DF PL V Y+E+  A G+
Sbjct: 19  GREIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAACGR 78

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+++RE +  ++EIL++R+IDR++RPLF   Y  E  V +N++  D +  P  ++ +
Sbjct: 79  YPGGFMKREGKANDSEILVARLIDRALRPLFPSDYHAEVYVTVNLISADKDIQPDALAGL 138

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I GQYV+NP   + Q   LD+ V GT D +LMVE E
Sbjct: 139 AASAALAVSDIPFGGPISEVRVARIGGQYVINPAFSQMQDADLDIMVGGTIDNILMVEGE 198

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE+V+L AI F H E K       +L+K   K+  V  +      +EE+ Q I  +
Sbjct: 199 MKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHEVNDEELRQTIIRE 256

Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRT 305
           L    +        K+ R    + L+ +  + FS E        I   F +D+Q K +R 
Sbjct: 257 LYDKAYAIATSGTMKHEREDAFNALEAEFATRFSEEELVEKAPLIHKYFHDDVQKKAMRN 316

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD+  R+DGR ++ +R I  +VG L   HGS++F RG+TQ++  VTLGT+ DE+  D 
Sbjct: 317 MILDEGKRLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKMDEKVKDE 376

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       F++HYNF P +TGE       SRREIGHG LA RA+ P++P   + PY +R+
Sbjct: 377 VLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPMVPVGEENPYAVRV 436

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDE 483
           VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ D     + +LSDI GDE
Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISDSATGRWAVLSDILGDE 496

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+K+ G+S  ++  AL+QA+ GR+HIL ++++ ++E R
Sbjct: 497 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAKALEQARVGRMHILGKLTECIAEPR 556

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNIDDDGTVKIASSSL 600
                F PR+  + IP D I  VIG GGKVI+ I +    T      D+ G V I     
Sbjct: 557 ADYRPFVPRIVQITIPQDMIGAVIGPGGKVIQDIQKTTGTTITITETDNKGVVDIFGLDK 616

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++AA   I+SI   PEV  +Y G+V  +M FGAFV     +D L+HIS++  +R    
Sbjct: 617 EAMDAALSRIKSIVAQPEVGDVYNGKVRSIMPFGAFVEIMPGKDALLHISEIDYKRFETM 676

Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +  +KEGD + VK++  D +  K+KLS +V+
Sbjct: 677 EETGLKEGDMIEVKVIGIDPKTNKLKLSHRVL 708


>gi|293115582|ref|ZP_05792154.2| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
           DSM 2876]
 gi|292808925|gb|EFF68130.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
           DSM 2876]
          Length = 705

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/693 (39%), Positives = 421/693 (60%), Gaps = 15/693 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +  ++ AGR L ++  R+A+Q++GA    YG+TVVL+T       +DG DFFPL+V Y+E
Sbjct: 11  SFSMDLAGRTLTVDVDRVAKQANGAAFMHYGDTVVLSTATASEKPRDGVDFFPLSVEYEE 70

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D + S
Sbjct: 71  KLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNLVMSVDPDCS 130

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P + +M+ ++ ++ +S +PF+GP    QV  I+G++V+NP   +   S L L V+ T++ 
Sbjct: 131 PELTAMLGSAISVAISDIPFDGPCATTQVGMIDGEFVINPSGSQMAVSDLKLTVASTREK 190

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           V+M+E  AN++ E  +++AI   H   + +I  I K+   C K      S     + EE+
Sbjct: 191 VIMIEAGANEIPEARMIEAIYKAHEVNQQIIAFIDKIVAECGKPKHEYTS---CAIPEEL 247

Query: 245 SQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              IKE     ++ V  F PEK VR +++ +LK  +   F ++   W      +V++  +
Sbjct: 248 FAAIKEIVPPAEMEVVMFAPEKQVREERVRNLKDMLCEKF-ADKEEWLPLIDEAVYQ-YE 305

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR+   +R ++A+V ++ R HGS++F RG TQ   V TL    D
Sbjct: 306 KKTVRKMILKDHKRPDGREITQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLSD 365

Query: 360 EQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L+  + +  +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +
Sbjct: 366 AQKIDGLNDQETSKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAERALIPVLPSVEE 425

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV  +  DDF++L
Sbjct: 426 FPYAIRTVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGETDDDFVLL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEM 535
           +DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R  I+ N M
Sbjct: 486 TDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTRQIVEGAIARCREARFFIMDNCM 545

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK ++E R ++G++ P++  + I P +I +V+G  GK I  I+E+TG K++I DDG V +
Sbjct: 546 SKAIAEPRKEVGKYAPKIIQIQIDPAKIGDVVGQRGKTINAIIEETGVKIDITDDGAVSV 605

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +    ++ A + I++I    E   + +G+V+ + +FGAFV F   ++G++HIS++S +
Sbjct: 606 CGTDKEAMDKAVKYIQTIVTDYEEGLVLEGKVISIKEFGAFVEFAPGKEGMIHISKVSKD 665

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           R+    DV+  GD V    L  D  G+   S+K
Sbjct: 666 RIEHVEDVLTLGDVVKCVCLGKDKMGRYSFSIK 698


>gi|271963663|ref|YP_003337859.1| polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270506838|gb|ACZ85116.1| Polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 773

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/719 (40%), Positives = 435/719 (60%), Gaps = 38/719 (5%)

Query: 1   MFDVHTVEI-----EWAGRPLKLETGRIARQSDG-AVLATYGETVVLATVVYDRSLKDGQ 54
           M  VH+ E       +  R ++ ETGR+ARQ+ G AV+    ET+VL+     ++ K+  
Sbjct: 1   MEGVHSSEAVIDNGSFGTRTIRFETGRLARQAAGSAVVYLDDETMVLSATTASKNPKENL 60

Query: 55  DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114
           DFFPLTV+ +ER YA G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+
Sbjct: 61  DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVV 120

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173
             +M  + +    VV++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E    +
Sbjct: 121 ATIMALNPDHLYDVVAINAASLSTQLAGLPFSGPIGGVRVALIEGQWVAFPTHSELANAT 180

Query: 174 LDLFVSG--TQD---AVLMVELEANQLSEDVVLDAIIF--------GHNECKPVI----E 216
            D+ V+G   +D   A++MVE E+ + +  +V D  +         G    KP I    E
Sbjct: 181 FDMVVAGRVLEDGDVAIMMVEAESTRDTLKLVADGAVAPTEETVAQGLEASKPFIKVLCE 240

Query: 217 AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           A SK+AK+ AK     P+ +D +D   + E ++  +K +L  +  I  K  R  ++D +K
Sbjct: 241 AQSKIAKVAAKATAEYPLFLDYQD--DVLEAVTGAVKSELAAALTIAGKQERETELDRVK 298

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
              +    SE     E EI + F  +  K++R  ++ + VR+DGR  + +R ++A+V ++
Sbjct: 299 ALALEKVGSEFEG-REKEISAAFRSLTKKLMRERVISEGVRIDGRGVKDIRQLNAEVHVV 357

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + + TL     EQ +D+L+  +   +M +YNF P +TGE  R+G
Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQMIDTLNPERTKRYMHNYNFPPYSTGETGRVG 417

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S++AL+DAG
Sbjct: 418 SPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMALLDAG 477

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           VP+   VAGIAMGL+ +GD ++ L+DI G ED +G MDFKVAGT   ITA+Q+D K+ GI
Sbjct: 478 VPLKGIVAGIAMGLINEGDQYVTLTDILGAEDAMGDMDFKVAGTKDVITALQLDTKLDGI 537

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +++  AL+QAK  RL I++ M + + +S  ++    PR+  + +P D+I  VIG  GK
Sbjct: 538 PASVLAAALKQAKGARLAIIDVMQEAI-DSPAEMNATAPRIITIKVPVDKIGEVIGPKGK 596

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630
           +I  I + TGA++ I+DDGT+ I ++     EAAR  I +I +  +PEV + Y G VVK+
Sbjct: 597 MINQIQDDTGAEITIEDDGTIYIGATDGPSAEAARSAINAIANPHMPEVGERYLGTVVKI 656

Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             FGAF+     +DGL+H+SQ+      +R+    DV+  G+ V V++ + D RGK+ L
Sbjct: 657 AAFGAFISLMPGKDGLLHVSQIRKLHGGKRIENVEDVMNVGEKVQVEIAEIDSRGKLSL 715


>gi|294786716|ref|ZP_06751970.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens F0305]
 gi|294485549|gb|EFG33183.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens F0305]
          Length = 922

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/714 (41%), Positives = 428/714 (59%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A    +++VL+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRVLRFETGRLAQQADGAVAAYLDNDSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + S  ++
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDSYDMI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           +M AASA+ M+SGLPFEGPV G ++  I+ Q+V  P   E ++   +L V+G        
Sbjct: 138 AMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPSWSERERAVFELVVAGRVLDNGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           A+ M+E  A + +  ++ D          +  G    KP I+ I + A+   K     D+
Sbjct: 198 AIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKVICQ-AQNELKAQAAKDT 256

Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--- 284
           KDF    E        + Q+   DL  +  I EK  R  +I  +K+ +V   +SE +   
Sbjct: 257 KDFPLFPEYTEDLYNRIDQIAHSDLDEALSIAEKLPRQDRISQIKQGVVETLTSEFTGME 316

Query: 285 -SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
            +  E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 317 DAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLSDIRTLSAEVDVVPRVHGSALFQR 376

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ  D+LSG     +M +Y   P +TGE  R+G+P RREIGHG 
Sbjct: 377 GETQILGVTTLNMLKMEQTTDALSGPDTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 436

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+  PVAGIA
Sbjct: 437 LAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIA 496

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    D    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 497 MGLVSGEVDGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 556

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           ALQQA   R  IL  + + + +   ++  + PR+    +P D+I  VIG  GK+I  I E
Sbjct: 557 ALQQAYEARTTILEVIDECI-DGVNEMSPYAPRIITTKVPVDKIGEVIGPKGKMINEIQE 615

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
           +TGA+V+I+DDGTV IAS      EAAR++I  IT   +PE  + Y+G+VVK   FGAFV
Sbjct: 616 KTGAEVSIEDDGTVYIASEGGEAAEAARQIIDQITHPHIPEAGEKYQGKVVKTTSFGAFV 675

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+    + +R+    DV++EGDTV V +   DD+GKI L++
Sbjct: 676 NLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 729


>gi|315226331|ref|ZP_07868119.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens DSM 10105]
 gi|315120463|gb|EFT83595.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens DSM 10105]
          Length = 966

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/714 (41%), Positives = 428/714 (59%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A    +++VL+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 62  FGKRVLRFETGRLAQQADGAVAAYLDNDSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYA 121

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + S  ++
Sbjct: 122 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDSYDMI 181

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           +M AASA+ M+SGLPFEGPV G ++  I+ Q+V  P   E ++   +L V+G        
Sbjct: 182 AMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPSWSERERAVFELVVAGRVLDNGDV 241

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           A+ M+E  A + +  ++ D          +  G    KP I+ I + A+   K     D+
Sbjct: 242 AIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKVICQ-AQNELKAQAAKDT 300

Query: 235 KDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--- 284
           KDF    E        + Q+   DL  +  I EK  R  +I  +K+ +V   +SE +   
Sbjct: 301 KDFPLFPEYTEDLYNRIDQIAHSDLDEALSIAEKLPRQDRISQIKQGVVETLTSEFTGME 360

Query: 285 -SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
            +  E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 361 DAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLSDIRTLSAEVDVVPRVHGSALFQR 420

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ  D+LSG     +M +Y   P +TGE  R+G+P RREIGHG 
Sbjct: 421 GETQILGVTTLNMLKMEQTTDALSGPDTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 480

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+  PVAGIA
Sbjct: 481 LAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIA 540

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    D    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 541 MGLVSGEVDGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAG 600

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           ALQQA   R  IL  + + + +   ++  + PR+    +P D+I  VIG  GK+I  I E
Sbjct: 601 ALQQAYEARTTILEVIDECI-DGVNEMSPYAPRIITTKVPVDKIGEVIGPKGKMINEIQE 659

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
           +TGA+V+I+DDGTV IAS      EAAR++I  IT   +PE  + Y+G+VVK   FGAFV
Sbjct: 660 KTGAEVSIEDDGTVYIASEGGEAAEAARQIIDQITHPHIPEAGEKYQGKVVKTTSFGAFV 719

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+    + +R+    DV++EGDTV V +   DD+GKI L++
Sbjct: 720 NLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 773


>gi|218133599|ref|ZP_03462403.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990974|gb|EEC56980.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
           43243]
          Length = 742

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/700 (40%), Positives = 421/700 (60%), Gaps = 21/700 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M+  +++EI  AGR L ++ GR+  Q++GA L  YG+TVVL+T    +  ++G DFFPL+
Sbjct: 47  MYKSYSMEI--AGRTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLS 104

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 105 VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSV 164

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E  P +V+M+ AS A  +S +PF+GP    Q+  I+G++V+NP  ++   G L L V+
Sbjct: 165 DPECRPELVAMLGASIATCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRLTVA 224

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T   V+M+E  AN++ E  +++AI   H   + +IE I+K+     K      S +   
Sbjct: 225 STSQKVIMIECGANEVPEARMIEAIYKCHEVNQTIIEFINKIVAEVGKPK---HSYESCA 281

Query: 240 LEEEMSQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292
           + +EM   +K     E++ V+ F  +K  R   ID + +K    F +++  W    GE V
Sbjct: 282 IPQEMFDAMKAIVTPEEMEVAVFTDDKQTREANIDAITEKFKEAF-ADNEEWLAILGEAV 340

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             +   Q K VR ++L    R DGR    +R ++A++ L+ R HGS++F RG TQ   VV
Sbjct: 341 YQY---QKKTVRKMILKDHKRPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVV 397

Query: 353 TLGTREDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TL    + Q VD L        ++ HYNF   + GE      P RREIGHG LA RA+ P
Sbjct: 398 TLAPLSEAQKVDGLDENVTAKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIP 457

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--D 469
           VLP   +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI + VAGI+ GLV    
Sbjct: 458 VLPSEEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGDT 517

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            DD+I+L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL
Sbjct: 518 DDDYIVLTDIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARL 577

Query: 530 HILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
            I++  M   ++E R ++G++ P++    I P +I +V+G  GK I  I+E+TG K++I+
Sbjct: 578 FIMDTCMKPAIAEPRKEVGKYAPKIIQTKIDPAKIGDVVGQRGKTINAIIEETGVKIDIN 637

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDG V I       ++ A + I +I    E  +I++G+VV + +FGAF+ F   ++G+VH
Sbjct: 638 DDGFVSICGVESEGMQKALKYINTIVTDFEEGQIFEGKVVSIKEFGAFIEFAPGKEGMVH 697

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           IS+++ ER+    DV+  GDTV    L  D  G+I  S+K
Sbjct: 698 ISKIAKERINHVEDVLTLGDTVRCICLGKDKMGRISFSIK 737


>gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95]
 gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95]
          Length = 695

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/698 (40%), Positives = 438/698 (62%), Gaps = 32/698 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           +E E  GR L++E G++A+QS G+V+ T+ E+ +L T         GQDFFPLTV +QE+
Sbjct: 4   LEKELFGRKLRIEHGKVAKQSLGSVMLTFNESTILVTADASEETVKGQDFFPLTVEFQEK 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE +P++  IL +R+IDR IRPLF + + NE QVI  V       S 
Sbjct: 64  FYAVGKIPGGFIKREGKPSDEAILAARLIDRPIRPLFPENFFNEVQVITTVFSMLNGDSI 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
               +  AS AL LS +PF G V G ++ Y++GQ++  P  ++ + S +D+ V+GT+DAV
Sbjct: 124 ETWGITGASLALNLSPIPFNGIVAGVRIGYVDGQFIAFPTQEQLKNSKIDMVVAGTKDAV 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKL--AKMCAKEPIVIDSKDFSK 239
            MVE E+ ++SE+ +++A++F   + K +I      +S+L   K   ++ IV   ++F  
Sbjct: 184 TMVEGESLEVSEEEMVEALMFAQEKIKEIIAIEEEFLSELNIEKWEVQKEIV--PEEF-- 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFED- 297
           +E+ +S + +E+L+       K  R K I + KK ++  F       W+    V+ FED 
Sbjct: 240 IEDYLSLIDEEELKKVLLTKGKKNRDKVISEYKKNVMKKFEEIFLEKWS----VAFFEDK 295

Query: 298 -------IQAKV---VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
                   + K+   +R +++++  R+DGR  + +RDI+ +VGL+ R HGS+LF RG+TQ
Sbjct: 296 KRFLENAFEEKLQDSMRKMIINENKRVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQ 355

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++  VTLG   D Q +D++   +   FM+HYNF P +TGEV R+   SRREIGHG LA R
Sbjct: 356 SLGTVTLGAPLDVQVLDTIFSDEEKRFMLHYNFPPFSTGEVKRLRGVSRREIGHGHLAER 415

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A   ++P   +FPYT+R+VS+I ES+GSSSMA+VC +SLALMDAGVPI K VAGIAMGL+
Sbjct: 416 AHKNLIPSDEEFPYTIRVVSDILESNGSSSMASVCSASLALMDAGVPIQKHVAGIAMGLI 475

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            + D+F++L+DI G EDHLG MDFKVAGT  GITA QMD+K   +++ ++  AL++AK  
Sbjct: 476 FENDNFVVLTDILGMEDHLGDMDFKVAGTRDGITAFQMDVKTSQVNKEVLQKALEKAKIA 535

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RL IL++M + + + R +L  + P +++  IP  +I  VIG GGK I+ I E    +V I
Sbjct: 536 RLKILDKMYETIPQPRKELSPYVPIMKVFKIPVSKIGEVIGPGGKNIKEISELYNVEVYI 595

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +DDG VK+   +  +++ A   I+++    E   I++G V +V  +G FV     + G++
Sbjct: 596 EDDGKVKVTGHNANKVDEAINHIQNLIAQVEKGGIFEGTVKRVEKYGIFVEVLPGKVGML 655

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           H+S L  +      +  K GD V V+++  +D+GK +L
Sbjct: 656 HVSNLKDKL-----ESFKIGDKVKVEVMKVEDQGKFQL 688


>gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans
           DSM 18053]
 gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans
           DSM 18053]
          Length = 713

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 302/704 (42%), Positives = 440/704 (62%), Gaps = 15/704 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           +F++ T  I    GR + +ETG++A+Q+DG+V+   G T++LATVV ++ +K+G DF PL
Sbjct: 2   LFNIVTKTITLPDGREITIETGKLAKQADGSVVVRLGNTMLLATVVANKDIKEGLDFLPL 61

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+YQE+  + G+IPG + RRE + +++E+L SR++DR +RPLF   Y  E QV I ++ 
Sbjct: 62  SVDYQEKFASAGRIPGSFQRREGKLSDHEVLTSRLVDRVLRPLFPDDYHAEVQVNILLIS 121

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D E+ P  ++ +AASAAL  S +PF GPV   +V  I+G+YV+NP        +LDL V
Sbjct: 122 ADAEALPDALAALAASAALAASDIPFGGPVSEVRVAKIDGEYVINPGTTALANATLDLMV 181

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---EPIVIDSK 235
             T + + MVE E +++SE+ V++A+   H   K    A+ +      K      V D  
Sbjct: 182 GATYNDIAMVEGEMSEVSEEEVIEALKIAHEAIKTQCLALKEFEAAVGKTEKREYVGDPA 241

Query: 236 DFSKLEEEMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIV 292
           D   LE  + +     +     +    K VR      + ++  +  + E ++ +NEG   
Sbjct: 242 D-DALEARLREFAYGKIYAVTQLGSTNKTVRKDGFKAVWEEFKTTITEEEAAEFNEGLAK 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             F D+  +  R ++LD++ R+DGR  + VR I+++V  L   HGS+LF RG+TQ++  V
Sbjct: 301 RYFNDLVWEASRRLVLDERKRLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTV 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT++DEQ VD+      + FM+HYNF   +TGEV     P RRE+GHG LA RA+  V
Sbjct: 361 TLGTKQDEQIVDTPLKYGYSKFMLHYNFPGFSTGEVKPNRGPGRREVGHGNLALRALKKV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           LP     PYT+RIVS+I ES+GSSSMATVC  SLALMD+G+ I  PV+GIAMGL+ D   
Sbjct: 421 LPAEGDNPYTIRIVSDILESNGSSSMATVCAGSLALMDSGLKIKAPVSGIAMGLISDEAT 480

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GITA QMDMK+ G+S  ++  AL QAK GRLH
Sbjct: 481 GKYAVLSDILGDEDHLGDMDFKVTGTAEGITACQMDMKVNGLSFEVLTEALMQAKAGRLH 540

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--- 587
           IL EM+K ++ESR  L   TPR  ++ I  + I  VIG GGKV++ I +++GA ++I   
Sbjct: 541 ILGEMNKTITESRPDLKPHTPRAIVIKIDREMIGAVIGPGGKVVQDIQKESGATISIEEK 600

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G V I S+  + ++ A   ++ I  VPE+ +IY G+V  +M FGAFV F   +DGL+
Sbjct: 601 DGAGFVSIFSADKSSMDKAVARVKGIILVPEIGEIYSGKVKSIMPFGAFVEFLPGKDGLL 660

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  ER+ K   V++ G+ V VKL++ D + GK +LS KV+
Sbjct: 661 HISEIKWERLEKMDGVLEVGEEVQVKLVEIDKKTGKYRLSRKVL 704


>gi|313674338|ref|YP_004052334.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312941036|gb|ADR20226.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 713

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 288/702 (41%), Positives = 435/702 (61%), Gaps = 37/702 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V    G+T++LATVV ++  ++G DF P++V+YQE+  + GK
Sbjct: 16  GREISIETGKLAKQADGSVEVRMGDTILLATVVSNKEAREGVDFLPMSVDYQEKFASSGK 75

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+L+RE + ++ E+L SR++DR++RPLF   Y  ETQV+I +   +    P  ++ +
Sbjct: 76  IPGGFLKREGKLSDYEVLTSRLVDRALRPLFPSDYHAETQVMIQLFSLEENDLPDALAAL 135

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +PF GP+   +V  +NG+ ++NP   + ++  +D+ V+ T D ++MVE E
Sbjct: 136 AASAALTASDIPFAGPISEVRVGRVNGEMIINPNSKQLEESDIDMIVAATIDNIMMVEGE 195

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  +++AI F H   K   +A   LAK   K     + ++++  EE  +++ KE 
Sbjct: 196 LKEISEQEMVEAINFAHESIKLQCQAQLDLAKDAGK----TEKREYNHEEEPDAELEKE- 250

Query: 252 LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDI---------- 298
                 I +KY +  Q  D+  K ++  +     ++E   G I S+ ED           
Sbjct: 251 ------IFDKYYQ--QFFDIAAKGLADKAERARLFSEIKDGYIDSLPEDTEISLSLAKSY 302

Query: 299 ----QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR   L+ + R+DGR  + +R I +++  L   HGS++F RG+TQ++  VTL
Sbjct: 303 LSAAQKKAVRNATLETRSRLDGRKLDEIRPIWSEIDYLPSAHGSAVFTRGETQSLTTVTL 362

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DEQ VD    +  N F++HYNF   +TGE      P RRE+GHG LA RA+  +LP
Sbjct: 363 GTKLDEQMVDGAVHSGYNKFILHYNFPAFSTGEARPNRGPGRREVGHGNLALRALKQILP 422

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--D 472
              + PYT+R+VS+I ES+GSSSMATVC  SLALMDAG+PI  PV+GIAMGL+ D +   
Sbjct: 423 TPDELPYTIRVVSDILESNGSSSMATVCAGSLALMDAGIPIKAPVSGIAMGLISDPETGK 482

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDH+G MDFKV GT+ GITA QMD+K+ G+S  +M+ AL QAK GR HI 
Sbjct: 483 YAILSDILGDEDHIGDMDFKVTGTEKGITACQMDIKVDGLSSELMMEALNQAKAGRDHIR 542

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
           NEMSK ++  R       PRV  + I  + I  VIG GGKV++ I + TGA V I++   
Sbjct: 543 NEMSKTIAAPREDYKPNAPRVVNIEIDREMIGAVIGPGGKVVQEIQKTTGATVVIEETEK 602

Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G + + + +   ++ A + I+ I   PEV ++Y G V  +  +GAFV     +DGL+HI
Sbjct: 603 GGKINVFAVNKESLDQAVKWIKGIVAKPEVGEVYDGIVKAIQPYGAFVEIMPGKDGLLHI 662

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           S++  E++     +++ G+ V VKL+D D + GK++LS KV+
Sbjct: 663 SEIKHEKIDNLEGILEIGEEVKVKLIDIDKKTGKLRLSRKVL 704


>gi|330466373|ref|YP_004404116.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
           AB-18-032]
 gi|328809344|gb|AEB43516.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
           AB-18-032]
          Length = 789

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/704 (40%), Positives = 423/704 (60%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  ++  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   ++ +++GQ+V  P  +E  + + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELSRATFDMVVAGRALADGDVA 199

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228
           ++MVE EA + +  +V D         +  G    KP I     A S+LA++ AK     
Sbjct: 200 IMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D  D +   + ++Q  + D+  +  I  K  R + +D +K ++V           E
Sbjct: 260 PVFLDYSDDAY--DAVAQFARADVAEALQIAGKADREEALDAIKSRLVEELGPRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R ++A+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLNAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQALDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL+ M + + E+  ++ ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 HEARQTILDVMQRAI-EAPAEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA E I +I +  +P+    + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVERINAIANPTMPKAGDRFLGTVVKTAPFGAFISLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDRVEVEIADIDQRGKIYL 719


>gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
 gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
          Length = 729

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/709 (40%), Positives = 435/709 (61%), Gaps = 35/709 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DGAV    G TV+LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGAVTLRMGNTVLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+G++V++P  ++ +Q  +DL V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGKFVIDPTFEQLEQADMDLMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H      CK  +E + ++     +E          
Sbjct: 185 ENIMMVEGEMDEVSEQDLLEALKAAHEAIKVHCKAQMELMEEVGSTVKRE---------- 234

Query: 239 KLEEEMSQMIKEDLRVSCF----------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
              EE  + +++ +  +C+             K+ R      +  +  + FS E      
Sbjct: 235 YCHEENDEDLRKAVHEACYDKAYAIAQSGNKNKHEREDAFTAICDEFKAQFSEEELEEKG 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I   + D++ + +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+TQ+
Sbjct: 295 PMIDRYYHDVEKEAMRRCILDEGKRLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQS 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA
Sbjct: 355 LSTVTLGTKADEKVVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   +P  A +PY +R++S+I ES+GSSSMATVC  +LALMDAGVPI  PV+GIAMGL+K
Sbjct: 415 LKGQIP--AGYPYCVRVMSDILESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIK 472

Query: 469 DG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +   D + +LSDI GDEDHLG MDFKV GT +GITA QMD+K  G++ +I+  AL QAK 
Sbjct: 473 NAGEDKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKCDGLTYDILEKALLQAKE 532

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +IL ++++ ++E R +L    PR+E M IP + I  VIG GGK+I+G+ E+TGA ++
Sbjct: 533 GREYILGKLTECIAEPRPELKPNAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAIIS 592

Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
              ID  G ++IA ++   I+ A  MI+SI  +PE+ ++Y G+V  +M +GAFV F   +
Sbjct: 593 IEEIDGVGRIEIAGTNKKCIDDAVRMIKSIVAIPEIGEVYTGKVRSIMPYGAFVEFLPGK 652

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DGL+HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 653 DGLLHISEIDWKRLETIEESGLKEGDEIQVKLMDIDPKTGKFKLSHKVL 701


>gi|206895816|ref|YP_002247081.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|257096676|sp|B5Y8I4|PNP_COPPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206738433|gb|ACI17511.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 697

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/680 (38%), Positives = 418/680 (61%), Gaps = 6/680 (0%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           AG+ +  ++G +A Q++GAVLA +G+TV L+TV+     K   DFFPLTV+Y+E++YAVG
Sbjct: 14  AGKKVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVDYEEKSYAVG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+ ++E RPT+ EIL +R+IDRSIRP+F    +NE QV+  ++  D+E+ P +V++
Sbjct: 74  KIPGGFFKKEGRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADMENPPDIVAL 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
              +AAL +S +P    + G +V YI+G+YVLNP   E  +  LDL V+GT+D+++M+E 
Sbjct: 134 NGTAAALAVSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLVVAGTRDSIVMIEA 193

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
            A ++ + +++  + F     + +I+ I++L +   +    I    F + + +  +  ++
Sbjct: 194 GAAEVDKSILIGGLKFAQEGIRQIIDLIAELKEKVGRPKAEITVVSFPQEQLDFMRNHED 253

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
             R +   P K  R + + +LKK +           +E     +F +++ +VVR  M   
Sbjct: 254 RFRAALITPIKQERERAVSELKKALFQEMLEVFPDLDEAMFNLMFGEVEKEVVRAYMKST 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R+DGR  + +R + A+  +L + HGS LFIRG TQ +  VTLG+  D Q++D++   +
Sbjct: 314 RKRVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEE 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              FM  Y+F P +TGEV     PSRREIGHG L  RA+  ++P    FPYT+R+VSE+ 
Sbjct: 374 FKRFMHQYDFPPFSTGEVKPRRGPSRREIGHGALVERALSYLIPSEEVFPYTIRVVSEVL 433

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GS+SMA+ C SS+ALM AGVP+++ V GIAMGL++  D+ ++L+DI G EDHLG MD
Sbjct: 434 ESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYNDENVVLTDIQGLEDHLGDMD 493

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGT  GITA+Q+D+K+ GIS   +  A+ QA+  R  IL+ +   +   R  L E  
Sbjct: 494 FKVAGTREGITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDAIPSPR-PLSETA 552

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + IP D+I  VIG GG+ ++ I ++TGA ++I +DG   +   +   +  A++ +
Sbjct: 553 PRIVKIEIPVDKIGEVIGPGGRNVKRITQETGATIDIREDGVAFVKGLTDESVNMAKQQV 612

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT- 669
             I   PEV +    +VV+V    A V     + GL+H+S++S  R+    DV+  G T 
Sbjct: 613 EMIVKDPEVGEELTARVVRVTPSYAIVEIAPGKTGLLHVSEVSETRIRSLEDVLSVGQTI 672

Query: 670 -VWVKLLDFDDRGKIKLSMK 688
            VWVK  + D  G+++ S K
Sbjct: 673 KVWVK--EKDGEGRLRFSAK 690


>gi|282858733|ref|ZP_06267886.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
           JCVIHMP010]
 gi|282588482|gb|EFB93634.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
           JCVIHMP010]
          Length = 748

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/702 (40%), Positives = 425/702 (60%), Gaps = 31/702 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 64  FPGGFTKREGKANDDEILTSRLVDRVLRPLFPADYHTEVYVQVMLLSADGIDQPDALAGF 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +P E P+   +V  ING+YV+NP   +  +  +D+ V  T+D ++MVE E
Sbjct: 124 AASAALAASDIPIEYPISEVRVARINGEYVINPTFPQMKEADMDIMVGATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKLEEEMSQMI 248
            +++SE  ++ A+   H   KP+ E   +L+K C    K     +  D     EE+ + +
Sbjct: 184 MDEVSELDLIGALKAAHEAIKPMCELQEELSKECGTDVKREYCDEVND-----EELREQV 238

Query: 249 KEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE------ 296
           +++   +C+        +K+ R +    +K   V  F + H+     E+    E      
Sbjct: 239 RKETYDACYAQAQSGDNDKHHREEVYAQIKADFVEKFDAAHTELTADELAEKHEMIDRYY 298

Query: 297 -DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++   +R  +LD   RMDGR ++ +R I ++V  L   HGS+LF RG+T ++   TLG
Sbjct: 299 ADVERDTMRRSVLDTGKRMDGRATDEIRHIWSEVDTLPMPHGSALFQRGETMSLSTCTLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T+ DE+ VD++       F++HYNF P +TGE        RREIGHG LA RA+   +P 
Sbjct: 359 TKMDEKMVDNVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKNQIP- 417

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDF 473
              FPYT+R+VS+I ES+GSSSMATVC  +LAL+DAGVP+ KPV+GIAMGL+K+   D +
Sbjct: 418 -TDFPYTVRLVSQILESNGSSSMATVCAGTLALLDAGVPMKKPVSGIAMGLIKNPGEDKY 476

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QAK GR HIL 
Sbjct: 477 AILSDILGDEDHLGDMDFKTTGTKDGITATQMDIKCDGLSYEILEKALMQAKAGREHILG 536

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDD 590
           +M + +SE R ++    PR+E M IP + I  +IG GGK+I+ + E TGA +    I++ 
Sbjct: 537 KMMETMSEPREEMKPQVPRIEQMFIPKEFIGAIIGPGGKIIQQMQEDTGATITIEEIENQ 596

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +++++ +   I+AA   I++I  VPE+ +IY+G V  +M +G FV     +DGL+HIS
Sbjct: 597 GKIQVSAPNKESIDAALGKIKAIVAVPEIGEIYEGTVRSIMPYGCFVEILPGKDGLLHIS 656

Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           ++  +R+    +  +KEGD + VKLL+ D + GK KLS KV+
Sbjct: 657 EIDWKRLETVEEAGIKEGDKIQVKLLEIDQKTGKYKLSRKVL 698


>gi|260591852|ref|ZP_05857310.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
           F0319]
 gi|260536136|gb|EEX18753.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
           F0319]
          Length = 751

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/699 (40%), Positives = 427/699 (61%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGIDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +P + P    +V  +NG+YV+NP  ++     +DL V  T+D ++MVE E
Sbjct: 133 AASAALAASDIPIDYPTSEVRVARVNGEYVINPTFEQMKHADMDLMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D    +E++ + ++++
Sbjct: 193 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEDLREQVRKE 250

Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298
              +C+        +K  R +  + +K   +  + + H+  +E        EI   F D+
Sbjct: 251 TYDACYAEAQSGDNDKKHREETYEKIKSDFIEAYDAAHTDLSEDDLEEKHAEIERYFADV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS++F RG+T ++   TLGT+ 
Sbjct: 311 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSAIFQRGETMSLSTCTLGTKM 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD++       F++HYNF P  TGE        RREIGHG LA RA+   +P  A 
Sbjct: 371 DEKMVDNVLDKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--AD 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN ++
Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLLT 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593
           + ++E R ++    PR+  + IP + I  VIG GGK+I+ I E+TGA + I++    G V
Sbjct: 549 ETIAEPRQEMKPQVPRIIQLEIPKEFIGAVIGPGGKIIQQIQEETGATITIEETEGIGKV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I++I  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    +  +KEGD + VKLLD D + GK KLS +V+
Sbjct: 669 WKRLETVEEAGIKEGDKIKVKLLDIDPKTGKYKLSRRVL 707


>gi|332881702|ref|ZP_08449350.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680341|gb|EGJ53290.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 742

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/703 (39%), Positives = 430/703 (61%), Gaps = 33/703 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+ T G T++LATV   +    G DF PL V Y+E+  A G+
Sbjct: 13  GRTISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKFAAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V + +   D    P  ++  
Sbjct: 73  FPGGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSADGVDMPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PFEGP+   +V  +NG+YV+NP   + +Q  +D+ V  T++ ++MVE E
Sbjct: 133 AASAALAVSDIPFEGPISEVRVARVNGEYVVNPTFAQLEQADMDIMVGATEENIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             +++E  +L+A+   H   KP+     +L K   KE      +++    E   + ++E+
Sbjct: 193 MKEVTEQDLLNALKVAHEAIKPMCRLQKELEKEAGKEV----KREYC--HEVNDEDLREE 246

Query: 252 LRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------V 294
           ++ +C+            +K+ R     ++++     ++  H+  +E E+          
Sbjct: 247 VKKACYDAAYRIAQEGNRDKHAREDAFMEIRENFKLSYAEAHADLSEDELAEKNALIDRY 306

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++   +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+TQ++   TL
Sbjct: 307 YHDVERDAMRRCVLDEGKRLDGRATTDIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTL 366

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA R +   +P
Sbjct: 367 GTKLDEKIIDEVLDQSKMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DD 472
               FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   + 
Sbjct: 427 --TDFPYTVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEEK 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HIL
Sbjct: 485 YAVLSDILGDEDHLGDMDFKTTGTIDGLTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
            ++++ +   R +L    PR+  + IP + I  VIG GGK+I+GI E+TGA + I++   
Sbjct: 545 GKLTECMPAPRAELKPHVPRIVQITIPKEFIGAVIGPGGKIIQGIQEETGAVITIEETDG 604

Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V+++ ++   I+AA   I+SI  VPEV ++Y G +  VM +GAFV F   RDGL+HI
Sbjct: 605 VGVVQVSGANKDVIDAALGKIKSIVAVPEVGEVYDGVIRSVMPYGAFVEFMPGRDGLLHI 664

Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           S++  +R+    +  +KEGD + VKL+D D + GK KLS +V+
Sbjct: 665 SEIDWKRLETVEEAGLKEGDHIQVKLVDIDQKTGKFKLSRRVL 707


>gi|315606750|ref|ZP_07881760.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
           33574]
 gi|315251605|gb|EFU31584.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
           33574]
          Length = 780

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/700 (40%), Positives = 426/700 (60%), Gaps = 28/700 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKANDDEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PF+ P+   +V  + G+YV+NP   +     +DL V  T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFDYPISEVRVARVGGEYVINPTFQQMADADMDLMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  ++ A+       KP+ E   +L+K    +  V    D    +EE+ + IK +
Sbjct: 193 MKEVSEQDLIGALKVAAEAIKPMCELQEELSKELGTD--VKREYDHEVNDEELREQIKSE 250

Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------VFEDIQ 299
           L    +       EK+ R    D + +  +  + + H+  +E E+          ++D+ 
Sbjct: 251 LYQPVYDVNKQALEKHARQDAFDKILEDFLEKYDAAHTELSEDELDEKHAEAHRYYDDVM 310

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+ +R+DGR +  +R I ++V  L   HGS+LF RG+T ++   TLGT+ D
Sbjct: 311 RDAMRRCILDEGLRLDGRATTEIRPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLD 370

Query: 360 EQYVDS--LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           E+ VD   + G QR  F++HYNF P +TGE        RRE+GHG LA R +   +P  A
Sbjct: 371 EKLVDDVLMKGYQR--FLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRGLKDQIP--A 426

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFII 475
            FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + I
Sbjct: 427 DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAI 486

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN+M
Sbjct: 487 LSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNKM 546

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592
            + +SE R ++    PR+E   IP + I  VIG GGK+I+ + E TGA + ID+    G 
Sbjct: 547 METISEPRAEMKPQVPRIEAFEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDETDGVGK 606

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V++++ +   I+AA   IRSI  +PEV ++Y+G V  +M +G FV     +DGL+HIS++
Sbjct: 607 VQVSAPNKDAIDAAIAKIRSIVAIPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEI 666

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             +R+    +  +KEGD + VKL++ D + GK KLS +V+
Sbjct: 667 DWKRLETVEEAGIKEGDKLKVKLMEIDPKTGKYKLSRRVL 706


>gi|331002061|ref|ZP_08325581.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330411857|gb|EGG91262.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 700

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 289/704 (41%), Positives = 433/704 (61%), Gaps = 24/704 (3%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +  +E AGR L+++ GR+A Q++GA L  YGET VL+T       ++G DFFPL+V 
Sbjct: 4   EFKSYSMELAGRTLRVDIGRVAAQANGAALMHYGETTVLSTATASDKPREGIDFFPLSVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGK+PGGY +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D 
Sbjct: 64  YEEKMYAVGKMPGGYNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDP 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVS 179
           + SP + +M+ ++ A  +S +PF+GP    Q+  + G +V+NP  +E+Q     L L V+
Sbjct: 124 DCSPELTAMLGSAIATAISDIPFDGPCATTQIGMVGGFFVVNP--NEEQMAVSDLKLTVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D V+M+E  AN++ ++ +++AI    +  K +IE I K+     KE     +  FS 
Sbjct: 182 STRDKVIMIEAGANEIPDEKMIEAIYKADSVNKEIIEFIDKIVAEVGKEKHAYTA--FS- 238

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292
           + EE++  IKE     ++ V+ F  EK VR + I  + +++   F ++   W    GE +
Sbjct: 239 IPEELTAAIKEIVPPQEMEVAVFTDEKQVREENIKAITQRLEEAF-ADKEEWLSLLGEAI 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             +   Q K VR ++L  + R DGR    +R ++A+  ++ R HGS++F RG TQ   +V
Sbjct: 298 YQY---QKKTVRKMILKDQKRPDGRAMNQIRTLAAETDIIPRVHGSAMFTRGQTQICNIV 354

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TL    + Q +D L+  +     +H YNF   + GE      P RREIGHG LA RA+ P
Sbjct: 355 TLAPLSEAQKIDGLNLLETTKRYIHQYNFPSYSVGETRPSRGPGRREIGHGALAERALIP 414

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--D 469
           VLP   +FPY +R VSE  ES+GS+SMA+ C S +ALM AGVPI + VAGI+ GLV    
Sbjct: 415 VLPTPEEFPYAIRSVSETFESNGSTSMASTCSSCMALMAAGVPIKRMVAGISCGLVTGDS 474

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            DD+++L+DI G ED  G MDFKV GTD GITA+QMD+KI G++++I+  A+ +    R 
Sbjct: 475 DDDYVLLTDIQGLEDFFGDMDFKVTGTDMGITAIQMDIKIHGLTQDIVKGAIAKCHEARD 534

Query: 530 HILNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
            ILN  M   +SE R ++ ++ P++  + I P +I +V+G  GK I  I+E TG K++I 
Sbjct: 535 FILNTCMRPCISEPRKEISKYAPKIAQIQINPSKIGDVVGKQGKTINKIIEDTGVKIDIS 594

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++G V +A +  A I+ A ++IR IT   E   I +G VV++++FGAFV     +DG+VH
Sbjct: 595 EEGLVSVAGTDQAMIDKAIDIIRGITIEIEAGMIMRGTVVRMLEFGAFVELAPGKDGMVH 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           IS+LS +RV K  DVVK G+ V VK++  D  +G+I LSMK  D
Sbjct: 655 ISKLSDKRVEKVEDVVKVGNEVTVKVIKVDPMKGRIDLSMKTSD 698


>gi|254525392|ref|ZP_05137444.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536816|gb|EEE39269.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 691

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/667 (41%), Positives = 405/667 (60%), Gaps = 39/667 (5%)

Query: 55  DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114
           DF PL  +Y+E+ YA G+IPGG++RRE RP E   LI+R+IDR +RPLF    ++E Q++
Sbjct: 23  DFLPLICDYEEKLYAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPSWMRDEIQIV 82

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173
            + +  D      V+++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G 
Sbjct: 83  ASCLSLDERVPADVLAVTGASLATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGD 142

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA---------------- 217
           LD+ ++GT D ++M+E  ANQLSE   ++AI FG+     +I++                
Sbjct: 143 LDIVIAGTPDGIVMIEAGANQLSEQDTIEAIDFGYEAVTELIKSQDDLLKDLGIKQIKPS 202

Query: 218 --------ISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
                    S L K C K PI +  K F  L +E   +  E ++V     +  +   + D
Sbjct: 203 DPEEDKTLSSYLEKNCTK-PIELVLKKFD-LSKEDRDLELEKIKVET---QGKIESLKDD 257

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
           D  K ++S         ++  + S F+ +  K++R+ +++   R+DGRD + VR ISA  
Sbjct: 258 DQLKVLLS--------EDDKLLSSDFKKLTKKLMRSQIINDNKRVDGRDLDEVRKISAFA 309

Query: 330 GLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           G+L +R HGS+LF RG TQ +   TLGT  D Q +D L+ +    ++ HYNF P + GE 
Sbjct: 310 GILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGET 369

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
             M  P RREIGHG LA RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L
Sbjct: 370 RPMRTPGRREIGHGALAERAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSL 429

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           +DAGVP+  PV+G AMGL+K+G +  IL+DI G ED LG MDFKVAGTD GITA+QMDMK
Sbjct: 430 LDAGVPLKAPVSGTAMGLIKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMK 489

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           I G+  +I+  A+++A+  RLHIL +M + +++ +  L    PR+    I P+ I  VIG
Sbjct: 490 ITGLPVSIISDAIKKARPARLHILEKMQEAINKPQESLSPHAPRLLSFRIDPELIGTVIG 549

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
            GG+ I+GI E+T  K++I+D G V IAS   A  E A+++I  +T      +I+ G V 
Sbjct: 550 PGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVT 609

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +++  GAFV     ++G+VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++
Sbjct: 610 RIIPIGAFVEILPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLR 669

Query: 689 VVDQNTG 695
            V QN+G
Sbjct: 670 GVGQNSG 676


>gi|303232220|ref|ZP_07318919.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
           PB189-T1-4]
 gi|302481630|gb|EFL44691.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
           PB189-T1-4]
          Length = 760

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/697 (41%), Positives = 425/697 (60%), Gaps = 28/697 (4%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           + E +   +  KLETG +A+Q+ G  L + G++ V  TVV  +  KD  DFFPLTV++ E
Sbjct: 5   SYEFDLYDKHYKLETGELAKQATGECLVSCGDSTVNVTVVVSKERKD-YDFFPLTVDFIE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGGYL+RESRPTE   L +RMIDR IRP F   ++NE Q++   +  D  + 
Sbjct: 64  KMYAVGRIPGGYLKRESRPTEKATLTARMIDRPIRPAFPDGFRNEVQIVAMPLVADQFNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
              + ++ AS A+   G+PFEGP+   ++  +   G++++NP  +E + S LDL ++G+ 
Sbjct: 124 VDTICVMGASCAMRTGGVPFEGPLACVRIGRNTQTGEFIVNPTYEERKHSDLDLELAGSA 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAK---------EP 229
             + M+E  A ++SE+ +L A+ FG       C    +  +K+A++            EP
Sbjct: 184 TFISMLEAAAQEISEEDMLSAMAFGQQAIAAFCAEQEKFFAKVAEVNGPIEEHTYELDEP 243

Query: 230 I-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           I  + ++ F+  +E MS  +K+D        +K  R ++++ LK  +V  F+ E      
Sbjct: 244 IEALHNRVFAHFDE-MSAALKDD--------DKLHRIEKVEKLKAAIVDEFTEEEQEEWA 294

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             + +  + ++   +R ++++   R+DGR +  VR +  +   L   HGS LF RG TQ 
Sbjct: 295 VALPAELKSLEKHAMRLMVVETGERVDGRSATEVRPLMIKPDYLPLVHGSGLFQRGQTQV 354

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TLG   + Q +D++   +   +M HYNF P  TGE  R+G+P RREIGHG LA RA
Sbjct: 355 LSVATLGMLSEWQRLDTIEPQEGKRYMHHYNFPPYCTGETGRLGSPKRREIGHGNLAERA 414

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PV+P   +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI +PV+G+AMGL++
Sbjct: 415 LLPVIPSEDEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPIVRPVSGVAMGLIQ 474

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +    ++L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  ALQQA  GR
Sbjct: 475 EEGKTVVLTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALQQAHVGR 534

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           + IL+ M   +   R    E  P++  + IP D IR+VIG GGKVIR I ++TGA V I 
Sbjct: 535 MEILDAMLAQIPVPRAHTKETAPKIISIKIPVDTIRDVIGSGGKVIRSIQDETGATVEIQ 594

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +DG+V IA    A  +AA + I  I  VPEV + Y G+VV +  FGAFV     +DGL+H
Sbjct: 595 EDGSVFIAGVGEA-AQAAADRINMIIKVPEVGEEYHGRVVGLQPFGAFVELLPGKDGLLH 653

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           IS+++  RV K  DV+  GD V V +L+ DD+GKI L
Sbjct: 654 ISRVAQGRVEKIEDVLSIGDEVNVVVLEVDDKGKISL 690


>gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL
           8301]
          Length = 747

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/692 (41%), Positives = 427/692 (61%), Gaps = 16/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR +++ETG++A+Q+DG+V+   G+T++L TVV  +  K   DF PL V Y+E+  AVG+
Sbjct: 19  GRQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAAVGR 78

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+++RE+R  ++E+L++R+IDR++RPLF   Y  E  V +N++  D +  P  ++ +
Sbjct: 79  FPGGFMKREARANDSEVLVARLIDRALRPLFPADYHAEVYVTVNLISADKDIQPDALAGL 138

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V   NG+Y +NP   E  +  LD+ V GT D +LMVE E
Sbjct: 139 AASAALAVSDIPFGGPISEVRVVRRNGEYAINPTYSEMPECDLDIMVGGTIDNILMVEGE 198

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE+V+L AI F H E K       +L+K   K+  V  +      +EE+ Q I  +
Sbjct: 199 MKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHEVNDEELRQTIIRE 256

Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-EDIQAKVVRT 305
           L    +        K+ R  + + L+ +  + +S E        I   F +D+Q K +R 
Sbjct: 257 LYDKAYAIATSGTMKHEREDKFNALEAEFAARYSEEELIEKAPLIHKYFHDDVQKKAMRN 316

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD+ VR+DGR ++ +R I  +VG L   HGS++F RG+TQ++  VTLGT+ DE+  D 
Sbjct: 317 MILDEGVRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDE 376

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +       F++HYNF P +TGE       SRREIGHG LA RA+ P++P     PY +R+
Sbjct: 377 VLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPMIPLGEDNPYAVRV 436

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDE 483
           VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ D +   + +LSDI GDE
Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDAGVKLRKPVSGIAMGLISDSETGKWAVLSDILGDE 496

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+K+ G+S  ++  AL+QA++GR+HIL ++++ ++E R
Sbjct: 497 DHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKGRMHILGKLTECIAEPR 556

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNIDDDGTVKIASSSL 600
                  PR+  + IP D I  VIG GGKVI+ I +    T     +D+ G V I     
Sbjct: 557 EDYKPCVPRIVQIVIPQDMIGPVIGPGGKVIQDIQKTTNTTITITEVDNKGIVDIFGIDK 616

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A   I++I  +PEV + Y G+V  ++ FGAFV     +D L+HIS++  +R    
Sbjct: 617 EALDGALARIKAIVAIPEVGETYHGKVRSIVAFGAFVEIMPGKDALLHISEIDYKRFETM 676

Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +  +KEGD + VKL+  D +  K+KLS K +
Sbjct: 677 EETGLKEGDEIDVKLIGVDPKTNKLKLSRKAL 708


>gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 735

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/705 (40%), Positives = 431/705 (61%), Gaps = 27/705 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+ Q+V+NP  ++ ++  +DL V  T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDNQFVINPTFEQLEKADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + ++MVE E +++SE  +L+A+   H     +CK  +E   ++     +E          
Sbjct: 185 ENIMMVEGEMSEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVGSTVKREYC------HE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D + ++  + FS E  +     I 
Sbjct: 239 VNDEELRKAVHDACYAKAYAIAASGNKNKHERMDAFDAICEEFKAQFSEEELAEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+  +
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GITA QMD+K  G++ +I+  AL QAK GR  
Sbjct: 477 AKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKCDGLTYDILEKALLQAKEGREF 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           IL ++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA +    I
Sbjct: 537 ILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEEI 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+ G ++IA ++   I+ A  MI+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNVGRIEIAGTNKQCIDDAMRMIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKLL+ D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLLEVDPKTGKFKLSRKVL 701


>gi|300727487|ref|ZP_07060878.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
 gi|299775190|gb|EFI71791.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
          Length = 739

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/698 (40%), Positives = 430/698 (61%), Gaps = 24/698 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRTITIETGKVAKQADGSAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++ E+L SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 64  FPGGFTKREGKASDEEVLTSRLVDRALRPLFPSDYHCEVYVQVMLLSADGVDQPDALAGF 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PF+  +   +V  ING++V+NP   + ++  +DL V  T+D ++MVE E
Sbjct: 124 AASAAMACSDIPFDYTISEVRVARINGEFVINPTFQQMEEADMDLMVGATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  +++A+   H   KP+ +   +LAK    +  V    D    +EE+ Q IK++
Sbjct: 184 MKEVSELDLINALKAAHEAIKPMCDLQDELAKELGTD--VKREYDDEINDEELRQQIKDE 241

Query: 252 LRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----------GEIVSVFEDIQ 299
           L    + I  K +  ++ +D   K+++ F  ++ + +E            E    ++D+ 
Sbjct: 242 LYQPAYDINHKALPKQERNDSFDKLLADFLEKYDAAHEDLSADDLEEKHAEAKRYYDDVL 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+ +R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT+ D
Sbjct: 302 RDAMRRCILDEGLRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E+ VD +       F++HYNF P +TGE        RREIGHG LA RA+   +P  A +
Sbjct: 362 EKLVDGVLNRSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKDQIP--ADY 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PYT+R+VS++ ES+GSSSMAT C  +LALMDAGVPI KPV+GIAMGL+K+   D + ILS
Sbjct: 420 PYTVRLVSQVLESNGSSSMATTCAGTLALMDAGVPIKKPVSGIAMGLIKNPGEDKYAILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILNEM K
Sbjct: 480 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNEMMK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594
            +SE R +L    PR+E+  IP + I  VIG GGK+I+ + E+TGA + I++    G V+
Sbjct: 540 TISEPRAELKPQVPRIEVFDIPKEFIGAVIGPGGKIIQQMQEETGATITIEETEGKGHVQ 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++ +   I+AA   IR+I  VPEV ++Y+G V  +M +G FV     +DGL+HIS++  
Sbjct: 600 VSAPNKESIDAALLKIRAIVAVPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDW 659

Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +R+    +  +KEGD + VKL++ D + GK KLS + +
Sbjct: 660 KRLETVEEAGLKEGDKIQVKLMEIDPKTGKYKLSRRAL 697


>gi|332667455|ref|YP_004450243.1| polyribonucleotide nucleotidyltransferase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336269|gb|AEE53370.1| Polyribonucleotide nucleotidyltransferase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 777

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/692 (41%), Positives = 434/692 (62%), Gaps = 22/692 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A Q+DG+V+   G T++ A    D+  + GQDFFPL+V+YQE+  + G+
Sbjct: 16  GREVIIETGKLATQADGSVVVRCGNTMIFAVATSDKEARAGQDFFPLSVDYQEKFASSGR 75

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE++ ++ EIL SR++DR+IRPLF   Y N+TQ++IN++  +    P     +
Sbjct: 76  IPGNFFRRETKLSDYEILCSRLVDRAIRPLFPNHYMNDTQIMINLISVEKNEMPDAFVAL 135

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF+GP+   +V  ING++V+NP  +      +DL V+ T   + MVE E
Sbjct: 136 AASAALSVSDIPFQGPISEVRVARINGEFVINPGKEALKTADIDLIVAATLQDITMVEGE 195

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE------MS 245
           A ++ E+ ++DA+   H   K    A   LA++   + ++   ++   L E+      + 
Sbjct: 196 AKEMDEESMIDALRIAHEAIKVQCHAQIALAQLVGDKALI--KREVPPLPEDEGVLEKLK 253

Query: 246 QMIKEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGE--IVSVFEDIQA 300
           +++ + +R V+    EK  R K+ +++KK+     +  +   +W E +      F+ ++ 
Sbjct: 254 ELVVDKIRAVASSASEKNARKKKFEEVKKEAEVEMALAYGEEAWPEKKPFFKRYFDVLKK 313

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K +R V+LD  +R+DGR    +R I ++V  L  THGS++F RG+TQA+  +TLGT+ DE
Sbjct: 314 KTIREVILDG-IRLDGRGPSEIRHIWSEVDYLPSTHGSAIFTRGETQALTSLTLGTKTDE 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+        F++HYNF   + GEV     P RRE+GH  LA R++  V+P  A  P
Sbjct: 373 QMIDNSQEMYHEKFILHYNFPGYSVGEVKPSRGPGRREVGHANLAARSLRKVMP--ADLP 430

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RIVS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMG++K+GD   ILSDI 
Sbjct: 431 YTVRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGMIKEGDRVAILSDIL 490

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDED LG MDFKV GT++GIT  QMD+KI G+  +++V AL QA+ GRLHILNEM K + 
Sbjct: 491 GDEDALGDMDFKVTGTENGITGCQMDIKIDGLPYDLLVRALSQAREGRLHILNEMKKTIE 550

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIAS 597
             R       PR+  + I    I  VIG GGKVI+ I   TG ++NI+   D G V IAS
Sbjct: 551 VPREDYKPHAPRIVEIIIDKSFIGAVIGPGGKVIQEIQASTGTQINIEEKGDKGHVTIAS 610

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S+   I++A E +  IT  P V  +++G V  VM +G FV F G + GL+H+S++S  R+
Sbjct: 611 SNKDAIDSAIEWVNRITFNPTVGDVFRGVVKSVMPYGVFVDFNG-KSGLLHVSEISHTRI 669

Query: 658 AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
               DV+KEGD + V+L++ D + GK++LS K
Sbjct: 670 DNVEDVLKEGDEIKVQLVEVDKKTGKMRLSRK 701


>gi|304383335|ref|ZP_07365801.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
           16973]
 gi|304335503|gb|EFM01767.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
           16973]
          Length = 780

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/699 (39%), Positives = 424/699 (60%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETGR+A+Q+DG+V+   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRSISVETGRLAKQTDGSVVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYAAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +P++NEIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKPSDNEILTSRLVDRVLRPLFPSNYHAEVFVNVMLLSADGIDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PF+  +   +V  +NG+YV+NP  ++  +  +D+ V  T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFDFHISEVRVARVNGKYVVNPTSEQMKEADMDIMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  +++A+   H    P+ +   +L+K    +  V    D    +EE+   + +D
Sbjct: 193 MKEVSEQDLIEALKVAHQAIIPMCDVQEELSKELGTD--VKREYDHETNDEELRAQLHKD 250

Query: 252 LRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------VFEDI 298
               C+        +K  R +  D +K   +  + + H+  +E E+          ++D+
Sbjct: 251 TYDKCYAIALAGDHDKKTRGEAFDKIKADFLETYDAAHTELSEDELEEKHAMVDRYYDDV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+TQ++   TLGT+ 
Sbjct: 311 MRDSMRRCILDEGKRLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLTTCTLGTKL 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ +D +       F++HYNF P  TGE     +  RREIGHG LA R +   +P  A 
Sbjct: 371 DEKMIDDVLDKSYQRFILHYNFPPFCTGEARPQRSVGRREIGHGHLAWRGLKGQIP--AD 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 429 YPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HIL +++
Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEEALMQAKAGREHILGKIT 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593
           + ++E R +L    PR+    IP + I  VIG GGK+I+ + E TG  + ID+    G V
Sbjct: 549 ETIAEPRAELKPQVPRIVAFDIPKEFIGAVIGPGGKIIQQMQEDTGTTITIDEIDGKGKV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++     I+AA E I++I  +PE+ +IY+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPDKESIDAALEKIKAIVAIPEIGEIYEGTVRSIMPYGCFVEIMPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             R+    D  +KEGD + VKL+D D + GK KLS +V+
Sbjct: 669 WRRLETVEDAGIKEGDKIRVKLMDIDPKTGKYKLSRRVL 707


>gi|317504248|ref|ZP_07962238.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
           15606]
 gi|315664618|gb|EFV04295.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
           15606]
          Length = 757

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/698 (40%), Positives = 420/698 (60%), Gaps = 24/698 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PFE  +   +V  ING++V++P   +     +DL V+ T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFEYAISEVRVARINGEFVIDPTFQQMADADMDLMVAATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  ++DA+       KP+ E   +L+K       V    D    +EE+ + IK +
Sbjct: 193 MKEVSEQDLIDALKAASEAIKPMCELQEELSKELGTN--VKREYDHEINDEELREQIKNE 250

Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDIQ 299
           L    +       EK+ R    D +    +  + + HS  +E        E    +ED+ 
Sbjct: 251 LYQPVYDVNKQALEKHARHDAFDKILADFLEKYDAAHSDLSEEDLEEKHAEATRYYEDVM 310

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT+ D
Sbjct: 311 RDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLD 370

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P+   +
Sbjct: 371 EKMVDDVMEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DY 428

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + ILS
Sbjct: 429 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 488

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN M +
Sbjct: 489 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLE 548

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594
            +SE R +L    PR+E   IP + I  +IG GGK+I+ + E+TGA + ID+    G V 
Sbjct: 549 TISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEETGATITIDEADGKGHVT 608

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++ +   I+AA   I++I  VPEV ++Y+G V  +M +G FV     +DGL+HIS++  
Sbjct: 609 VSAPNKESIDAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPGKDGLLHISEIDW 668

Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +R+    +  +KEGD V VKL++ D + GK KLS +V+
Sbjct: 669 KRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVL 706


>gi|291536078|emb|CBL09190.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           M50/1]
          Length = 697

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/694 (40%), Positives = 416/694 (59%), Gaps = 23/694 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+  Q++GA L  YGET VL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 7   MELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E  P V
Sbjct: 67  AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPEV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187
           V+M+ ++ A+ +S +PF GP    Q+  ++G++++NP     D G L L V+ T + V+M
Sbjct: 127 VAMIGSALAVTISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGDLQLTVASTAEKVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ E+ +++AI   H+  + +I  I+ + +   K      S     + EEM   
Sbjct: 187 IEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTS---CAIPEEMFAA 243

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E +  + F  EK  R + I ++  K+   F +++  W    GE V  +   Q 
Sbjct: 244 IKEIVTPEQMEEAVFTDEKQKREENIREITDKLAEAF-ADNEEWLAVLGEAVYQY---QK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 359

Query: 361 QYVDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           Q +D L     T+R  ++  YNF   + GE      P RREIGHG LA +A+  VLP   
Sbjct: 360 QKIDGLDENITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     DD+++
Sbjct: 418 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ +A+  R++I++E 
Sbjct: 478 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK + E R ++  F P++  + I PD+I +V+G  GK I  I+++TG K++I DDG V 
Sbjct: 538 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    +  A EMI+ IT      +I+ G VV + +FGAFV F   ++G+VHIS++S 
Sbjct: 598 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ER+ +  DV+  GD V V  L  D  G+I  SMK
Sbjct: 658 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMK 691


>gi|282878811|ref|ZP_06287578.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
           35310]
 gi|281299019|gb|EFA91421.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
           35310]
          Length = 778

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/699 (40%), Positives = 427/699 (61%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +P++NEIL SR++DR++RPLF   Y  E  V I ++  D    P  ++ +
Sbjct: 73  FPGGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVYVQIMLLSADGVDQPDALAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PF+  +   +V  ING+YV+NP  ++  Q  +DL V  T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFDFYISEVRVARINGEYVINPTFEQMKQADMDLMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  +++A+   H   KP+     +L K   K+  V    D    +E++ + +  +
Sbjct: 193 MKEVSELDLINALKAAHEAIKPMCAVQDELNKELGKD--VKREYDHEVNDEDLREKMNNE 250

Query: 252 LRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWN------------EGEIVSVFEDI 298
           L    + I ++ +  ++  D   K+++ F  E+ + +              E    ++D+
Sbjct: 251 LYQPVYDITKQALPKQERHDAFDKVLADFLEEYDAAHAADLTEEELEEKHAEATRYYDDV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+TQ++   TLGT+ 
Sbjct: 311 LKNAMRRCVLDEGKRLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKL 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +       F++HYNF P +TGE        RREIGHG LA R +   LP    
Sbjct: 371 DEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQLPD--D 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN+M 
Sbjct: 489 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALLQAKAGREHILNKML 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTV 593
           + ++E R ++    PR+E   IP + I  VIG GGK+I+ + E TGA + I   D+ G +
Sbjct: 549 ETIAEPRPEMKPQVPRIEAFEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDEVDNVGKI 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I+SI  +PEV +IY+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPNKESIDAAIAKIKSIVAIPEVGEIYEGTVRSIMPYGCFVEILPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    D  + EGD + VKLL+ D + GK KLS +V+
Sbjct: 669 WKRLETVEDAGIHEGDKIRVKLLEIDPKTGKYKLSRRVL 707


>gi|85057750|ref|YP_456666.1| polynucleotide phosphorylase/polyadenylase [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123725338|sp|Q2NJ06|PNP_AYWBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84789855|gb|ABC65587.1| polyribonucleotide nucleotidyltransferase [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 715

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/696 (40%), Positives = 422/696 (60%), Gaps = 37/696 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D ++L  Y +TVVL T+V+ R   +  DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDSSILVRYQDTVVLTTMVFSRK-PNNLDFLPLTVIYQEKLYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE R  ++EIL SR+IDRS+RPLF   ++ E QVI  V+  D +    + SM+ +S
Sbjct: 74  SFLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGSS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
            +L++S +PF   + G  V  IN ++++NP L +    +L L V+GT+  V M+E  AN+
Sbjct: 134 LSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKHNVTMIEAHANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVI---EAIS------KLAKMCAKEPIVIDSKDFSKLEEEMS 245
           +SE   L+AI F H   K +    E I       K+ K   +   +     F+K   ++ 
Sbjct: 194 VSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPVKMTKTLHQTEQIQQQSFFAKNHSQVK 253

Query: 246 QMIKEDLRVSCFIPEKYVRCK-QIDDLKKKM--------VSYFSSEHSSWNEGEIVSVFE 296
           Q I     +SC       + K QI D  K+         ++ F  E    +     ++F+
Sbjct: 254 QAI-----LSCNSKNDLQQLKEQILDQAKQTPFFKTIDAITVFDYEAHKKHLQITENLFQ 308

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  + +R+++L +K+R D R+ E +R + +Q+ LL R HGS+LF RG TQ++  VTLG 
Sbjct: 309 KLSKQEMRSLILQEKIRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGC 368

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + + +D LS  Q   FM+HYNF P + G V R  APSRREIGHG LA +AI  VLP+ 
Sbjct: 369 LSESKIIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEE 428

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
             FPYT+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAGI++GLV D   + ++
Sbjct: 429 KDFPYTIRVVSEILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETNKYV 488

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH+G MD K+AGT+ GITA+QMD+KI GI   I+  A  QAK+GRLHIL +
Sbjct: 489 ILSDIQGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIPFKILQEAFLQAKKGRLHILEQ 548

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTV 593
           M++ +S+ RL++ ++ P+V +M I P++IR++IG GGK+I  I+E   G K++I+ DG V
Sbjct: 549 MNQTISQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGRV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLV 647
            +  S+L  ++     I S+    +V   Y+  +++ +        GA    C   +GL+
Sbjct: 609 FVMHSNLETVKKTVAFIESLIQEIQVGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGLI 668

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           H++++   +  K +DV+K G+TV VK    ++RG+I
Sbjct: 669 HVNKM---KFQKITDVLKIGETVLVKCTKINERGRI 701


>gi|257413916|ref|ZP_04744667.2| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           L1-82]
 gi|257201810|gb|EEV00095.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           L1-82]
          Length = 719

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/694 (40%), Positives = 416/694 (59%), Gaps = 23/694 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+  Q++GA L  YGET VL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 29  MELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMY 88

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E  P V
Sbjct: 89  AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPEV 148

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187
           V+M+ ++ A+ +S +PF GP    Q+  ++G++++NP     D G L L V+ T + V+M
Sbjct: 149 VAMIGSALAVTISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGDLQLTVASTAEKVIM 208

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ E+ +++AI   H+  + +I  I+ + +   K      S     + EEM   
Sbjct: 209 IEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTS---CAIPEEMFAA 265

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E +  + F  EK  R + I ++  K+   F +++  W    GE V  +   Q 
Sbjct: 266 IKEIVTPEQMEEAVFTDEKQKREENIREITDKLAEAF-ADNEEWLAVLGEAVYQY---QK 321

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + 
Sbjct: 322 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 381

Query: 361 QYVDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           Q +D L     T+R  ++  YNF   + GE      P RREIGHG LA +A+  VLP   
Sbjct: 382 QKIDGLDENITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 439

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     DD+++
Sbjct: 440 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 499

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ +A+  R++I++E 
Sbjct: 500 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 559

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK + E R ++  F P++  + I PD+I +V+G  GK I  I+++TG K++I DDG V 
Sbjct: 560 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 619

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    +  A EMI+ IT      +I+ G VV + +FGAFV F   ++G+VHIS++S 
Sbjct: 620 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 679

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ER+ +  DV+  GD V V  L  D  G+I  SMK
Sbjct: 680 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMK 713


>gi|294790571|ref|ZP_06755729.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
           F0304]
 gi|294458468|gb|EFG26821.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
           F0304]
          Length = 953

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/719 (41%), Positives = 431/719 (59%), Gaps = 47/719 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ Y
Sbjct: 17  DFGKRVLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENFDFFPLTVDVEEKMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+    + S  +
Sbjct: 77  AAGKIPGSFFRREGRPSNEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSISPDDSYDM 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           ++M AASA+ M+SGLPFEGPV G ++  I+ Q+V  PR  E ++   +L V+G       
Sbjct: 137 IAMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPRWSERERAVFELVVAGRVLDNGD 196

Query: 183 DAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEP 229
            A+ M+E  A + +  ++ D          +  G    KP I    EA ++L K  AKE 
Sbjct: 197 VAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKTICEAQNELKKAAAKE- 255

Query: 230 IVIDSKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
               +KDF    E        + Q+   DL  +  I EK  R  +I  +K+ +V   ++E
Sbjct: 256 ----TKDFPLFPEYTEDLYNRIDQIAHSDLNDALSIAEKLPRQDRIAQIKQGVVDTLAAE 311

Query: 283 HSSWN----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
            +  +    E EI + F+++Q ++VRT +L +  R+DGR    +R +SA+V ++ R HGS
Sbjct: 312 FTDMDDAEKEKEIGNAFKELQRQIVRTRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGS 371

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           +LF RG+TQ + V TL   + EQ  D+LSG     +M +Y   P +TGE  R+G+P RRE
Sbjct: 372 ALFQRGETQILGVTTLNMLKMEQTTDALSGPSTKRYMHNYEMPPYSTGETGRVGSPKRRE 431

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           +GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+  P
Sbjct: 432 VGHGALAERALIPVLPSREKFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAP 491

Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           VAGIAMGLV    +    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  
Sbjct: 492 VAGIAMGLVSGEVNGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPA 551

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           +I+  AL+QA   R  IL  +++ + +   ++  + PR+  M +P D+I  +IG  GK+I
Sbjct: 552 DILAAALRQAYEARTTILEVINECI-DGVNEMSPYAPRIISMTVPVDKIGEIIGPKGKMI 610

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA+V I+DDGTV IAS      E AR++I  I +  +PE  + Y+G+VVK   
Sbjct: 611 NEIQEKTGAEVTIEDDGTVYIASEGGNAAEEARKLIDQIANPHIPEEGEKYQGKVVKTTS 670

Query: 633 FGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           FGAFV+     DGL+HISQ+      +R+    DV++EGDTV V +   DD+GKI L++
Sbjct: 671 FGAFVNLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 729


>gi|330997766|ref|ZP_08321601.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569654|gb|EGG51419.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 742

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/703 (39%), Positives = 430/703 (61%), Gaps = 33/703 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV+ T G T++LATV   +    G DF PL V Y+E+  A G+
Sbjct: 13  GRTISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKFAAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V + +   D    P  ++  
Sbjct: 73  FPGGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSADGVDMPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PFEGP+   +V  ING+YV+NP   + +Q  +D+ V  T++ ++MVE E
Sbjct: 133 AASAALAVSDIPFEGPISEVRVARINGEYVVNPTFAQLEQADMDIMVGATEENIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             +++E  +L+A+   H   KP+     +L K   KE      +++    E   + ++E+
Sbjct: 193 MKEVTEQDLLNALKVAHEAIKPMCRLQKELEKEAGKEV----KREYC--HEVNDEDLREE 246

Query: 252 LRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------V 294
           ++ +C+            +K+ R     ++++     ++  H+  +E E+          
Sbjct: 247 VKKACYDAAYRIAQEGNRDKHAREDAFMEIRENFKLSYAEAHADLSEDELAEKNTLIDRY 306

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++   +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+TQ++   TL
Sbjct: 307 YHDVERDAMRRCVLDEGKRLDGRATTEIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTL 366

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA R +   +P
Sbjct: 367 GTKLDEKIIDEVLEQSKMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DD 472
           +   FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   + 
Sbjct: 427 E--DFPYTVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEEK 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HIL
Sbjct: 485 YAVLSDILGDEDHLGDMDFKTTGTIDGLTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
            ++++ +   R +L    PR+  + IP + I  VIG GGK+I+GI E TG+ + I++   
Sbjct: 545 GKLTECMPAPRPELKPHVPRIVQITIPKEFIGAVIGPGGKIIQGIQEDTGSVITIEETDG 604

Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V+++ ++   I+AA   I+SI  VPEV ++Y G +  VM +GAFV F   RDGL+HI
Sbjct: 605 VGVVQVSGANKDVIDAALGKIKSIVAVPEVGEVYDGVIRSVMPYGAFVEFMPGRDGLLHI 664

Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           S++  +R+    +  +KEGD + VKL+D D + GK KLS +V+
Sbjct: 665 SEIDWKRLETVEEAGLKEGDHIQVKLVDIDQKTGKFKLSRRVL 707


>gi|194246773|ref|YP_002004412.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
           mali]
 gi|257096701|sp|B3QZG1|PNP_PHYMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193807130|emb|CAP18568.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
           mali]
          Length = 728

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/712 (39%), Positives = 438/712 (61%), Gaps = 32/712 (4%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           EI +    L++E G I+RQ++G+V+  Y +TV+L+  V     K+  +F PLTVNYQE+ 
Sbjct: 14  EIIFENNVLRIEIGEISRQANGSVMLFYKDTVILSVAVCGDK-KNSLNFLPLTVNYQEKL 72

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+LRRE +P++ EIL SR+IDR+IRPLFSK +KNE Q+I  V+  D + +  
Sbjct: 73  YAAGKIPGGFLRREGKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDPDGNNE 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++++ +S AL++S +PF  PV    V  I    ++NP L + +  S  L ++GT+D++ 
Sbjct: 133 NIALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLILAGTKDSLN 192

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE---- 242
           MVE+ + ++SE+  L++I FGH   K +    +++A    K  I I   + + L E    
Sbjct: 193 MVEMSSKEISENNFLESIKFGHEIIKKLCLFQTEIANQIGKTKIKIPLHNVNNLLEVEIK 252

Query: 243 -----EMSQMIKEDLRVSCFIPE---KYVRCKQIDDLKKKMVS-------YFSSEHSSWN 287
                E+  ++K    V+        K ++   +++ K+K ++           E+    
Sbjct: 253 DKYFSEIEMILKNKCNVNNVKKSDILKKLKENVLENYKEKFLNNKKDNFNLLDLENQKLY 312

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             E+  +F+ +   ++R  +L + +R DGR+S  +R I++++ +L RTHGS+LF RG TQ
Sbjct: 313 LNEVEIIFDFLVRTIIRETILKENIRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQ 372

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++ +VTLGT  + + +D LS      FM+HYNF   A G V R  APSRREIGHG LA +
Sbjct: 373 SLAIVTLGTLRESKIIDDLSDEVDKRFMLHYNFPAFAVGSVGRYLAPSRREIGHGMLAEK 432

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  VLP    FPY++R+VSEI +S+GSSS AT+C SS+ALM AGVP+   VAG+AMGL+
Sbjct: 433 ALECVLPSENDFPYSIRVVSEILDSNGSSSQATICASSMALMSAGVPLKSLVAGVAMGLI 492

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    + ILSDI G ED+ G +DFK+AGT  GITA+Q+D+KI GI+  I    L+Q
Sbjct: 493 VDDIDKINHYTILSDIEGLEDYQGDIDFKIAGTKVGITALQLDIKIKGITLEIFEKVLEQ 552

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ-TG 582
           AK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG GGK+I  I+E+   
Sbjct: 553 AKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSGGKIINQIIEKHDN 612

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV----MD--FGAF 636
            K++I  DG + I   ++  ++     I++     +V  +Y+ ++++     MD  FGA 
Sbjct: 613 VKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILRFVKDKMDKTFGAI 672

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
                  +G +HIS+L   +V K  DV+K G  + VK +  ++RG+I LS K
Sbjct: 673 AEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIILVKCIKINERGQIDLSKK 724


>gi|154485033|ref|ZP_02027481.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
           27560]
 gi|149733986|gb|EDM50105.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
           27560]
          Length = 688

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/692 (39%), Positives = 417/692 (60%), Gaps = 19/692 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA    YG+T VL+T       ++G DFFPL+V ++E+ Y
Sbjct: 1   MELAGRTLTVDVGRVAKQANGAAFMHYGDTTVLSTATASDKPREGVDFFPLSVEFEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   VM  D E  P +
Sbjct: 61  SVGKIPGGFNKREGKASENSVLTARVIDRPMRPLFPKDYRNDVSLNNLVMSVDPECRPEL 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLM 187
           V+M+ ++ +  +S +PF+GP    QV  ++G++V+NP +   D G L L V+ T+  V+M
Sbjct: 121 VAMLGSAISTCISDIPFDGPCAMTQVGMVDGEFVVNPSQAVWDNGDLQLTVASTKQKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN + E  +++AI   H+  + +IE I K+     KE    +S     + EE+   
Sbjct: 181 IEAGANIIPEAKMIEAIYMAHDINQTIIEFIEKIVAEVGKEKHTYES---CAIPEELFAA 237

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IKE     ++ V+ F  +K  R   I ++ +K+   F +++  W    GE +  +   Q 
Sbjct: 238 IKEIVPPAEMEVAVFTDDKQTREANIKEITEKLEEAF-ADNEEWLAVLGEAIYQY---QK 293

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR  + +R ++A+V ++ R HGS++F RG TQ   V TL    + 
Sbjct: 294 KTVRKMILKDHKRPDGRALDQIRPLAAEVDIVPRVHGSAMFTRGQTQICNVCTLAPLSEA 353

Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L    +   +M HYNF   + GE      P RREIGHG LA +A+ PVLP   +F
Sbjct: 354 QKIDGLDENVKTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAEKALMPVLPSEEEF 413

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV  +  DD+++L+
Sbjct: 414 PYAIRTVSETFESNGSTSMASTCSSCMSLMAAGVPIKSMVAGISCGLVTGETDDDYVLLT 473

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A+ + +  RL I++  M 
Sbjct: 474 DIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRDIVEGAIARTREARLFIMDTCMK 533

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R ++  + P++E + I PD+I +V+G  GKVI  I+E+TG K++I D+G V + 
Sbjct: 534 PAIAEPRKEVNAYAPKIETIQINPDKIGDVVGKSGKVINAIIEETGVKIDISDEGMVSVC 593

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 I+ A + I++I    E   I +G VV + +FGAF+ F   ++G+VHIS+++ ER
Sbjct: 594 GVDKDMIDKALKYIKTIVTDFEEGMILEGTVVSIKEFGAFIEFAPGKEGMVHISKIAKER 653

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V    D +  GD V  K L  D  G+I  S+K
Sbjct: 654 VEHVEDYLTLGDKVKCKCLGKDKMGRISFSIK 685


>gi|229829166|ref|ZP_04455235.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
           14600]
 gi|229792329|gb|EEP28443.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
           14600]
          Length = 710

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/699 (39%), Positives = 420/699 (60%), Gaps = 17/699 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T  +E AGR L++E G++A+Q++GAV+  YGET +L T       ++G DFFPL+V +
Sbjct: 15  MKTFRMELAGRELQIEVGKVAKQANGAVMIRYGETTLLCTATASEKPREGIDFFPLSVEF 74

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGK PGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D  
Sbjct: 75  EEKYYSVGKFPGGFNKREGKASENSVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPS 134

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQ 182
             P +V+M+  + A  +S +PF+GP    QV  ING  ++NP + D D G L L V+ T+
Sbjct: 135 CRPELVAMIGTAMATAISDIPFDGPCAMTQVGMINGDLLINPSQSDWDNGDLRLTVASTR 194

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDF 237
           D V+M+E  AN+LS+  +++AI   H+  + +I  I ++     K     E + ID + F
Sbjct: 195 DKVIMIEAGANELSDQEMIEAIYKAHDVNQTIIALIDQMVAEVGKAKHDYEHVAIDRQMF 254

Query: 238 SKLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
               EEM +++  + +  + F  EK VR + I  + +++   F+          + S   
Sbjct: 255 ----EEMKKIVTPKQMEEAVFSDEKQVREENIRRVTERLAEAFADREDYL--AVLDSAVY 308

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
             Q K VR ++L    R DGR  + +R +SA+V L+ R HGS++F RG TQ   +VTL  
Sbjct: 309 QYQKKTVRKMILKDHRRPDGRALDQIRPLSAEVDLIPRVHGSAMFTRGQTQICNIVTLAP 368

Query: 357 REDEQYVDSLSGTQRNDFMMH-YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             + Q V+ L     N   +H YNF   + GE      P RREIGHG LA RA+ PVLP 
Sbjct: 369 LSEVQRVEGLDANVTNKRYIHQYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPT 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDF 473
              FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV  +D DD+
Sbjct: 429 VEDFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGEDDDDY 488

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL- 532
           ++L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++    RL I+ 
Sbjct: 489 VLLTDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTRTIVEEAIRRTHEARLFIMD 548

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N MSK +   R +L ++ P++  + I P +I +V+G  GK I  I+++TGAK++ID+ G 
Sbjct: 549 NCMSKAIDRPRAELSKYAPKIVQIQIDPSKIGDVVGQRGKTINEIIDRTGAKIDIDESGA 608

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V +++   A I+ A  ++  IT   E  +   G+VV + +FGAF+ F   ++G+VHIS++
Sbjct: 609 VSVSAMDQAAIDEAVRLVEIITMDFEKGQHLTGKVVSIKEFGAFIEFAPGKEGMVHISRI 668

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           + +R+ +  DV+  GD V V  +  D  G++  SMK  D
Sbjct: 669 ANQRIDRVEDVLTLGDIVEVVCMGKDKMGRMSFSMKSSD 707


>gi|297243010|ref|ZP_06926948.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           AMD]
 gi|296889221|gb|EFH27955.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           AMD]
          Length = 920

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/728 (40%), Positives = 438/728 (60%), Gaps = 42/728 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+    L  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI----SKLAKMCAKEPI 230
           A+ M+E  A + + +++ +          +  G    KP I+ I    ++L ++ AKE  
Sbjct: 198 AIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQNELKRIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  +E+   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +E E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DEAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ VD+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPGREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQA   R  IL  +++ + +   ++  F PR+    IP D+I  VIG  GK+I  I 
Sbjct: 556 AALQQAHEARTTILEVINECI-DCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+ +I SI +  VP+  + + G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVYISSEGGEAAEKAKGIIDSIANPRVPKAGETFTGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGD V V +   D+RGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFED 734

Query: 692 QNTGKPIV 699
           Q +  P V
Sbjct: 735 QESSAPAV 742


>gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
 gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
          Length = 718

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/704 (41%), Positives = 438/704 (62%), Gaps = 18/704 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF++    I+   G  + LETG++ARQ+DGAV+   G+ ++LATV   ++ K+G DF PL
Sbjct: 1   MFNIVQQTIQMPDGSTITLETGKLARQADGAVVLRSGKLMMLATVCAAKTHKEGTDFLPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+YQE+  + GKIPG + RRE + ++NEILISR+IDR++RP+F + +  E QV++ +  
Sbjct: 61  SVDYQEKFASNGKIPGSFQRREGKLSDNEILISRLIDRALRPIFPEDFHAEVQVMVTLHS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAA+M S +PF GP+   +V  ING+YV+NP +       LDL V
Sbjct: 121 ADENIQPDALAALAASAAIMASDIPFNGPISEVRVAKINGEYVINPPVQAIGNADLDLIV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKM--CAKEPIVIDSK 235
           +GT D+++MVE E+N++SE  +++A+   H   K  + A  +  AK+    K     +  
Sbjct: 181 AGTSDSIIMVEGESNEVSEIEMVEALRAAHEVIKLQVAAQKEFEAKVGSTTKREYNHEVH 240

Query: 236 DFSKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           D ++++E+M   + + +   C    P K+ R +      K +  + +++     +  +  
Sbjct: 241 D-AEIKEKMYSELFDKVYAVCLEGNPNKHYRSEA---FAKILEDFIAAQPEELQDNPLYK 296

Query: 294 V-FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           V F DI     R ++L++  R+DGR    +R I+ +V  L   HGS+LF RG+TQ++   
Sbjct: 297 VYFGDITYDASRKMVLEEGKRLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTT 356

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DEQ VD       + F +HYNF   +TGEV       RREIGHG LA+R++  V
Sbjct: 357 TLGTKLDEQIVDLPMVKGYSKFYLHYNFPGFSTGEVRPNRGVGRREIGHGNLAQRSLERV 416

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P   + PYT+R+VS+I ES+GSSSMATVC   L+LMDAGVPI  PV+GIAMGL+ D   
Sbjct: 417 MPPEEENPYTIRVVSDILESNGSSSMATVCAGCLSLMDAGVPIKAPVSGIAMGLITDPST 476

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GI A QMD+KIGG+S +I+  AL QA+ GRLH
Sbjct: 477 GKWAVLSDILGDEDHLGDMDFKVTGTAQGIVACQMDIKIGGLSFDIIEKALNQAREGRLH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--- 587
           IL +M++VL + +  L    PR   + I  + I  VIG GGKV++ I  ++GA VNI   
Sbjct: 537 ILGKMTEVLEKPKPDLKPHAPRAVTIVIDRELIGAVIGPGGKVVQEIQRESGATVNIEEK 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+ G V I +++   ++ AR+ I +I   PEV +IY   V  +  FGAF+ F   ++GL+
Sbjct: 597 DNKGYVSIFATNGESMDLARKRIDAIVKQPEVGEIYDATVKSIQPFGAFMEFLPGKEGLL 656

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++S ER+     V+KEGD + +KL + D + GK +LS KV+
Sbjct: 657 HISEISWERLPSMDGVLKEGDQLQIKLTEVDKKTGKFRLSRKVL 700


>gi|288800995|ref|ZP_06406451.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288331929|gb|EFC70411.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 743

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/699 (39%), Positives = 428/699 (61%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+ + T G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRFISVETGKVAKQADGSAVITMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +PF+ P+   +V  ING+YV+NP   + +   +DL V  T+D +LMVE E
Sbjct: 133 AASAALACSDIPFDFPISEVRVARINGEYVVNPTFQQMENADMDLMVGATKDNILMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  +++A+   H   KP+ +  ++L+K    +  V    +    +EE+ + +++ 
Sbjct: 193 MDEVSEQELIEALKVAHEAIKPMCDLQTELSKELGVD--VKREYNHENNDEELREALRKA 250

Query: 252 LRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------VFEDI 298
               C+        +K  R +  D +K+  +  +++ H+   E E+          ++D+
Sbjct: 251 TYDKCYAIALAGDHDKKSRGEAFDQIKEAFIEEYNNAHTDLTEDELSDKHALVDRYYDDV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR  + +R I  +V  L   HGS+LF RG+TQ++   TLG++ 
Sbjct: 311 MRDSMRRCILDEGKRLDGRKPDEIRPIWCEVSTLPMPHGSALFTRGETQSLSTCTLGSKL 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +       F++HYNF P +TGE        RRE+GHG LA R +   +P  A 
Sbjct: 371 DEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRGLKGQIP--AD 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +L+LMDAGVP+  PV+GIAMGL+K+   + + +L
Sbjct: 429 FPYTVRLVSQILESNGSSSMATVCAGTLSLMDAGVPMKAPVSGIAMGLIKNPGEEKYAVL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QAK GR HIL++M+
Sbjct: 489 SDILGDEDHLGDMDFKTTGTLKGITATQMDIKCDGLSFEILEKALMQAKAGREHILSKMT 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTV 593
           + +S  R ++    PR+  + IP + I  +IG GGK+I+ + E+TGA + I   D  G V
Sbjct: 549 ETISAPREEMKPQVPRIVSLEIPKEFIGAIIGPGGKIIQQMQEETGATITIEEVDGVGKV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA + I++I  VPE+ + Y G V  VM +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPNKDSIDAALKKIKAIVAVPEIGETYDGVVRSVMPYGCFVEIMPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    +  +KEGD + VKLLD D + GK KLS + +
Sbjct: 669 WKRLESVEEAGIKEGDNITVKLLDIDPKTGKYKLSRRAL 707


>gi|283782720|ref|YP_003373474.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|298253113|ref|ZP_06976905.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           5-1]
 gi|283441010|gb|ADB13476.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|297532508|gb|EFH71394.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           5-1]
          Length = 926

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/728 (40%), Positives = 438/728 (60%), Gaps = 42/728 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+    L  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI----SKLAKMCAKEPI 230
           A+ M+E  A + + +++ +          +  G    KP I+ I    ++L ++ AKE  
Sbjct: 198 AIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQNELKRIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  +E+   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +E E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DEAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ VD+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPGREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQA   R  IL  +++ + +   ++  F PR+    IP D+I  VIG  GK+I  I 
Sbjct: 556 AALQQAHEARATILEVINECI-DCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      E A+ +I SI +  VP+  + + G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVYISSEGGEAAEKAKGIIDSIANPRVPKAGETFTGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGD V V +   D+RGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFED 734

Query: 692 QNTGKPIV 699
           Q +  P V
Sbjct: 735 QESSAPAV 742


>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
          Length = 897

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/745 (37%), Positives = 434/745 (58%), Gaps = 60/745 (8%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+++I    R   +ETG + RQ+ G+V  T GET+V  TV  + +  +  DFFPL+VNYQ
Sbjct: 87  HSLKIPVGDRHTLVETGHMGRQASGSVTVTDGETIVYTTVCLNDTPSEPSDFFPLSVNYQ 146

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER  A G+  GG+ +RE +  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   
Sbjct: 147 ERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGSH 206

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           +P  +++ AA  AL LS +P    V G +V  I  +Y++NP  +E + S LDL ++GT  
Sbjct: 207 APDALAITAAGIALALSEIPTSKAVAGVRVGLIGDKYIVNPTAEEMENSELDLMLAGTDS 266

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLE 241
           A+LM+E   N L E+ +L A+  G +  + +   +  L K C K P +ID+      +L 
Sbjct: 267 AILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGK-PKMIDAIKLPPPELY 325

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS------EHSSWNEGEIVS-- 293
           + + ++  ++L     I  K  R K +  L+++++   +       E +  +  E ++  
Sbjct: 326 KHVEEIAGDELVKVLQIRNKIPRRKALSSLEERVLKILTENGFVIDESTPRSNAETIAEI 385

Query: 294 ---------------------------------------VFEDIQAKVVRTVMLDKKVRM 314
                                                  VF+++ +K +R  +++   R 
Sbjct: 386 LEDEDEEVIVDGEVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRS 445

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGTQRND 373
           DGR  + +R I++   +L R HGS+LF RG+TQA+ V TLG  +  Q +++L        
Sbjct: 446 DGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDYKR 505

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y+F P   GE  R+GAPSRREIGHG LA R++  +LP    FPYT+R+ S ITES+
Sbjct: 506 FYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYTIRVESTITESN 565

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVPI   +AGIAMGLV D  +F      +ILSDI+G ED  G
Sbjct: 566 GSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASG 625

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG + GITA QMD+K+ GI+  IM  AL QA+ GR HIL EM K L     +L 
Sbjct: 626 DMDFKVAGNEDGITAFQMDIKVAGITLPIMREALLQARDGRKHILGEMMKSLPPPAKRLS 685

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           ++ P + +M + PD+I  +IG GGK ++ I+EQ+G + ++ +D+GTV+I +  LA +E +
Sbjct: 686 KYAPLIHVMKVRPDKINLIIGSGGKKVKSIIEQSGIEAIDTEDNGTVRIFAKDLASLEKS 745

Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           + +I S+T VP +  IY+   +K ++ +G FV     R+GL +IS+LS+  +AK  DV K
Sbjct: 746 KAIISSLTMVPNIGDIYRNCEIKSIVPYGVFVEIAPGREGLCYISELSSGWLAKAEDVFK 805

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD + VKL + +++G+++LS + +
Sbjct: 806 VGDHIDVKLTEINEKGQLRLSHRAL 830


>gi|291538574|emb|CBL11685.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 719

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/694 (40%), Positives = 415/694 (59%), Gaps = 23/694 (3%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+  Q++GA L  YGET VL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 29  MELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMY 88

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E  P V
Sbjct: 89  AVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPEV 148

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187
           V+M+ ++ A+ +S +PF GP    Q+   +G++++NP     D G L L V+ T + V+M
Sbjct: 149 VAMIGSALAVTISDIPFAGPCAMTQMGMADGEFIINPSQKVWDTGDLQLTVASTAEKVIM 208

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN++ E+ +++AI   H+  + +I  I+ + +   K      S     + EEM   
Sbjct: 209 IEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTS---CAIPEEMFAA 265

Query: 248 IK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           IK     E +  + F  EK  R + I ++  K+   F +++  W    GE V  +   Q 
Sbjct: 266 IKEIVTPEQMEEAVFTDEKQKREENIREITDKLAEAF-ADNEEWLAVLGEAVYQY---QK 321

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + 
Sbjct: 322 KTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEV 381

Query: 361 QYVDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           Q +D L     T+R  ++  YNF   + GE      P RREIGHG LA +A+  VLP   
Sbjct: 382 QKIDGLDENITTKR--YIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 439

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     DD+++
Sbjct: 440 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 499

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ +A+  R++I++E 
Sbjct: 500 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 559

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK + E R ++  F P++  + I PD+I +V+G  GK I  I+++TG K++I DDG V 
Sbjct: 560 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 619

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    +  A EMI+ IT      +I+ G VV + +FGAFV F   ++G+VHIS++S 
Sbjct: 620 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 679

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ER+ +  DV+  GD V V  L  D  G+I  SMK
Sbjct: 680 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMK 713


>gi|39938737|ref|NP_950503.1| polynucleotide phosphorylase/polyadenylase [Onion yellows
           phytoplasma OY-M]
 gi|81402500|sp|Q6YQX2|PNP_ONYPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39721846|dbj|BAD04336.1| polyribonucleotide nucleotidyltransferase [Onion yellows
           phytoplasma OY-M]
          Length = 715

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/696 (40%), Positives = 416/696 (59%), Gaps = 37/696 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D ++L  Y +TVVL T V+ R   +  DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDASILVRYQDTVVLTTTVFSRK-PNNLDFLPLTVIYQEKLYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE R  ++EIL SR+IDRS+RPLF   ++ E QVI  V+  D +    + SM+ +S
Sbjct: 74  SFLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGSS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
            +L++S +PF   + G  V  IN ++++NP L +    +L L V+GT+  V M+E  AN+
Sbjct: 134 LSLLISEIPFFEAISGVYVGKINDKFIINPTLQQLANSTLHLMVAGTKHNVTMIEAHANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVI---------EAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           +SE   L+AI F H   K +           A +K+     +         F+K + ++ 
Sbjct: 194 VSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPAKITNTLHQTEQTQQQAFFAKHQSQVK 253

Query: 246 QMIKEDLRVSCFIPEKYVRCK-QIDDLKKKM--------VSYFSSEHSSWNEGEIVSVFE 296
           Q I     +SC       + K QI D  K+          + F  E    +     ++F+
Sbjct: 254 QAI-----LSCNSKNDLQQLKEQILDQAKQTPFFKTIDTATVFDYEAHKKHLQTTETLFQ 308

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  +  R+++L +K+R D R  E +R + +Q+ LL R HGS+LF RG TQ++  VTLG 
Sbjct: 309 KLSKQETRSLILQEKIRPDKRGLEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGC 368

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + + +D LS  Q   FM+HYNF P + G V R  APSRREIGHG LA +AI  VLP+ 
Sbjct: 369 LSESKIIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEE 428

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
             FPYT+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAG+++GLV D   + ++
Sbjct: 429 KDFPYTIRVVSEILESNGSSSQATVCASSLALMASGVPLKKAVAGMSVGLVFDQATNKYV 488

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH+G MD K+AGT+ GITA+QMD+KI GI   I+  A  QAK+GRLHIL  
Sbjct: 489 ILSDIQGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIHFKILQEAFLQAKKGRLHILEH 548

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTV 593
           MS+ +S+ RL++ ++ P+V +M I P++IR++IG GGK+I  I+E   G K++I+ DG V
Sbjct: 549 MSQTISQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGRV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLV 647
            +  S+L  ++     I S+    ++   Y+  +++ +        GA    C   +GL+
Sbjct: 609 FVMHSNLETVKKTVAFIESLIQEIQIGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGLI 668

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           H++Q   ++  K +DV+K G+TV VK    +DRG+I
Sbjct: 669 HVNQ---KKFQKITDVLKIGETVSVKCTKINDRGRI 701


>gi|288929802|ref|ZP_06423645.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288328903|gb|EFC67491.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 742

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/699 (40%), Positives = 428/699 (61%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +P +NEIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ +
Sbjct: 73  FPGGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSADGVDQPDALAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AAS+A+  S +PF+  +   +V  +NG+YV+NP  ++  +  +D+ V  T+D ++MVE E
Sbjct: 133 AASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFEQMKEADMDIMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            ++++E  ++ A+   H+  KP+     +LAK   K+  V    D    +E++ + + ++
Sbjct: 193 MDEVTEQDLIQALKVAHDAIKPMCTMQEELAKELGKD--VKREYDHEVNDEDLRKQMNDE 250

Query: 252 LRVSCFIPEKYVRCKQ-IDDLKKKMVSYFSSEHSSWNEGEIVS------------VFEDI 298
           L    +   K    KQ   D   K+V+ F  ++ + N  ++ +             ++D+
Sbjct: 251 LYQPVYDVTKQALAKQERHDAFDKIVTDFLEKYDAENTEKLTAEELEEKHALAARYYDDV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+TQ++   TLGT+ 
Sbjct: 311 LRDAMRRCILDEGKRLDGRKTDEIRPIWCEVSSLPMPHGSAIFTRGETQSLSTCTLGTKL 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P  A 
Sbjct: 371 DEKMVDDVLDKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   + + IL
Sbjct: 429 YPYTVRVVSQILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGLIKNPGEEKYAIL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HIL +++
Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILGKLT 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593
           + ++E R +L    PR+  + IP + I  VIG GGK+I+ + E TG  + ID+    G V
Sbjct: 549 ETIAEPRPELKPQVPRIVQIEIPKEFIGAVIGPGGKIIQQMQEDTGTTITIDEVDGKGKV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++   A I+AA   IR+I  VPEV +IY+G V  VM +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPDKASIDAALSKIRAIVAVPEVGEIYEGTVRSVMPYGCFVEIMPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    +  +KEGD + VKLLD D + GK KLS +V+
Sbjct: 669 WKRLETVEEAGIKEGDKMQVKLLDIDPKTGKYKLSRRVL 707


>gi|225677342|ref|ZP_03788315.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590610|gb|EEH11864.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 507

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/510 (49%), Positives = 347/510 (68%), Gaps = 6/510 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GRPL LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRPLSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E + S LDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  K D   +     K  R + ++ +++ +++    + +  +E  I    ++ 
Sbjct: 240 DITQELEKYGK-DFEKAYSQTVKQERVQALEAIRENILNTL--KETGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           I GDED+LG MDFKVAGT  G+TA+QMDMK
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMK 506


>gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
 gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
          Length = 768

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/706 (39%), Positives = 429/706 (60%), Gaps = 37/706 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA++     T++LATVV  +    G DF PL  +Y+E+  A G+
Sbjct: 13  GRTISIETGKLAKQADGAIMLRLNNTMLLATVVAAKDAVPGTDFMPLQCDYKEKYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE R ++ EIL SR++DR++RPLF   Y  E  V I +   D +  P  ++  
Sbjct: 73  FPGGFTKREGRASDYEILTSRLVDRALRPLFPSNYHAEVYVNITLFSADGKDMPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +PF+GP+   +V  ING YV+NP  ++  Q  +D+ V  T++ ++MVE E
Sbjct: 133 AASAALAASDIPFDGPISEVRVARINGAYVINPTFEQLKQADMDIMVGATEENIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++ E  +L+A+   H   KP+     +L K    +  V    D    +E++ + + ++
Sbjct: 193 MDEVPESALLEALKAAHEAIKPMCRLQKELMKELGTD--VKREYDHEVNDEDLRKQVTDE 250

Query: 252 LRVSCFIP----------------EKYVRCKQIDDLKKKMVS---YFSSEHSSWNEGEIV 292
               C+ P                E + + ++  D K++ V+     +++        I 
Sbjct: 251 ----CYQPVYAIAAAGNHNKNQREEGFTKIRE--DFKERYVAAHVTLAADELEEKNALID 304

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++   +R  +LD+  R+DGR +  +R I  + G L   HGS++F RG+TQA+   
Sbjct: 305 RYYNDVERDAMRRCILDEGKRLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGETQALATT 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGTR DE+ +D +       F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 365 TLGTRLDEKMIDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKNQ 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A FPYT+RIVS+I ES+GSSSMATVC  +L+L+DAGVP+++PV+GIAMGL+K+   
Sbjct: 425 IP--ADFPYTVRIVSDILESNGSSSMATVCAGTLSLLDAGVPMNRPVSGIAMGLIKNPGE 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + ILSDI GDEDHLG MDFK  GT +G+TA QMD+K  G+S  I+  AL QAK GR H
Sbjct: 483 EKYAILSDILGDEDHLGDMDFKTTGTINGLTATQMDIKCDGLSYEILEKALMQAKAGREH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++++ L+E R       PR+    IP + I  VIG GGK+I+G+ E+TG+ + I+++
Sbjct: 543 ILGKLTETLAEPRPDFKPHVPRIVAFEIPKEFIGAVIGPGGKIIQGMQEETGSTITIEEE 602

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G +++++     I+AA   IR+I  VPEV +IY  ++V +M +G FV F   ++GL+
Sbjct: 603 DGVGKIQVSAPCKESIDAAVAKIRAIVAVPEVGEIYDAKIVSIMPYGCFVEFMPGKEGLL 662

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691
           HIS+++ +R+    +  + EGD   VKLL+ DD+ GK +LS +V++
Sbjct: 663 HISEIAWKRLESVEEAGLHEGDHTSVKLLEIDDKTGKFRLSHRVLE 708


>gi|119717401|ref|YP_924366.1| polynucleotide phosphorylase/polyadenylase [Nocardioides sp. JS614]
 gi|187610316|sp|A1SLJ4|PNP_NOCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119538062|gb|ABL82679.1| Polyribonucleotide nucleotidyltransferase [Nocardioides sp. JS614]
          Length = 742

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/711 (41%), Positives = 428/711 (60%), Gaps = 41/711 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R +K ETG +ARQ+ GAV A   E T++L+     +  KD  DFFPLT++ +ER Y
Sbjct: 17  KFGTRTVKFETGLLARQAAGAVTAYLDEDTMLLSATTAGKHPKDHFDFFPLTIDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + R E RP E+ IL  R+IDR +RP F K  +NE QV+I VM  + ++   V
Sbjct: 77  AAGKIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALNPDTPYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD 183
           +++ AAS +  LSGLPF GPV G +V  I GQ+V  P   + +    D+ V+G    T D
Sbjct: 137 LAINAASLSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDMVVAGRVTETGD 196

Query: 184 -AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE-- 228
            A++MVE EA + + D+V           +  G +  KP I    EA  +LA + AK   
Sbjct: 197 VAIMMVEAEATEQTWDLVRSGTQAPTEEIVAGGLDAAKPFIKQLCEAQVELANVAAKPVQ 256

Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
             P+ +D +D  +  +E  +   +   ++++    +K  R  + D+LK ++++    E  
Sbjct: 257 DFPVFLDYEDDVYDAVEAAVKAELAAAMKIA----DKQERNDRTDELKDEVLAKLG-EQF 311

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E EI + F  +  +VVR  +L  KVR+DGR    +R + A+VG++ R HGS+LF RG
Sbjct: 312 EGREKEIGAAFRSVNKQVVRESILRDKVRIDGRGLADIRPLHAEVGVIPRVHGSALFERG 371

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LS  +   +M  Y F P +TGE  R+G+P RRE+GHG L
Sbjct: 372 ETQILGVTTLDMLKMEQQLDTLSPEKHRRYMHKYVFPPFSTGETGRVGSPKRREVGHGAL 431

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           ARRA+ PVLP   +FPY +R +SE   S+GS+SM +VC S+LAL+ AGVP+  PVAGIAM
Sbjct: 432 ARRALLPVLPTREEFPYAIRQLSEAMGSNGSTSMGSVCASTLALLQAGVPLKAPVAGIAM 491

Query: 465 GLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    DG   ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  A
Sbjct: 492 GLVSGEIDGQLQYVALTDILGAEDAFGDMDFKVAGTREFVTALQLDTKLDGIPAEVLAQA 551

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA+  RL IL+ M++ + E   ++  + PR+  + IP D+I  VIG  GK+I  I + 
Sbjct: 552 LTQARDARLTILDVMAEAIDEPE-EMSAYAPRIITITIPVDKIGEVIGPKGKIINQIQDD 610

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA ++I+DDGT+ I +++    EAA+  + +I +  +PEV + Y G VVK  +FGAFV 
Sbjct: 611 TGASISIEDDGTIYIGATNGEAAEAAKNAVNAIANPTMPEVGERYLGTVVKTTNFGAFVS 670

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
               +DGL+HIS+L +    +RV    DVV  G  + V++ + DDRGK+ L
Sbjct: 671 LMPGKDGLLHISKLRSLAGGKRVDAVEDVVSVGQKIQVQIAEIDDRGKLSL 721


>gi|160892563|ref|ZP_02073353.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
 gi|156865604|gb|EDO59035.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
          Length = 700

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/703 (40%), Positives = 423/703 (60%), Gaps = 20/703 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  T  ++ AG+ L+++ GR+A Q++GA    YG+T VL+T+      +DG DFFPL+V 
Sbjct: 4   EFKTYSMDIAGKTLRVDIGRVAAQANGAAFMHYGDTTVLSTITASEKPRDGIDFFPLSVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   V   D 
Sbjct: 64  YEEKMYAVGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVTSVDP 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E  P +V+M+ ++ A  +S +PF GP    QV  I+G++++NP   + D+G L L V+ T
Sbjct: 124 ECRPELVAMLGSAIATAISDVPFCGPCAMTQVGMIDGEFIINPSQKQWDEGDLKLTVAST 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SK 239
              V+M+E  AN++ ED +++AI   H+    +IE I+K+ +   K        D+    
Sbjct: 184 STKVIMIEAGANEIPEDKMIEAIYKAHDVNLSIIEFINKMVEEVGKP-----KHDYVSCA 238

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + EE+   +KE     ++ V+ F  EK VR + I  +++K    F +++  W    I   
Sbjct: 239 IPEELFAAMKEIVTPAEMEVAVFTDEKQVREENIRQIREKFEEAF-ADNEEW-LALIPEA 296

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L  + R DGR    +R ++A+V ++ R HGS++F RG TQ   +VTL
Sbjct: 297 LYQYQKKTVRKMILKDRKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDIVTL 356

Query: 355 GTREDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 357 APLSEIQKIDGLDENVVSKRYMHHYNFPSYSVGETKVSRGPGRREIGHGALAERALLPVL 416

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGD 471
           P   +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     D
Sbjct: 417 PSVEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKSMVAGISCGLVTGDTDD 476

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+++L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL I
Sbjct: 477 DYVVLTDIQGLEDFFGDMDFKVTGTYKGITAIQMDIKIHGLTRPIVEEAIARTREARLFI 536

Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ++  MS  +   R  + EF P++  + I PD+I  VIG  GK I  I+E+TG K++IDDD
Sbjct: 537 MDGVMSSAIPAPRTHVNEFAPKIVQIKIDPDKIGEVIGQRGKTINTIIEETGVKIDIDDD 596

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V +       ++ A  MI+ I +   V   YKG+VVK++D GA V     +DGL+HIS
Sbjct: 597 GNVSVCGVEQESMDKAMNMIKMIVEPLVVGDDYKGKVVKILDCGAIVSLAPNKDGLIHIS 656

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           +LS +RVAK  DVV  GD V VK++  D+R G+I LS+K V+ 
Sbjct: 657 KLSDKRVAKVEDVVNVGDDVVVKVIKIDERAGRISLSLKDVEN 699


>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
 gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
          Length = 853

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/746 (38%), Positives = 434/746 (58%), Gaps = 62/746 (8%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG + RQ+ G+V  T GET++  +V  D    +  DF+PL+VNYQE
Sbjct: 18  SVKIPVGDRHIMVETGHLGRQASGSVTVTDGETIIYTSVCLDDVPSEPSDFYPLSVNYQE 77

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 78  RFSAAGRTSGGFFKREGRLKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 137

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P  +++ AA  AL LS +P    + G +V  ++ ++++NP   E ++  LDL ++GT  A
Sbjct: 138 PDSLAVTAAGIALALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESKLDLLLAGTDSA 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEE 242
           + M+E   N L E+ +L+A+  G +  + +   ++ L K C K P ++D+      +L +
Sbjct: 198 IFMIEGYCNFLPEEKLLEAVQIGQDAVRTICNEVNALVKKCGK-PKMLDAIKLPPPELYK 256

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---------------------- 280
            M ++  ++L     I  K  R K +  L++K++S  +                      
Sbjct: 257 HMEEIAGDELVKVLQIRNKVPRRKALQSLEEKVLSILTEKGYVSKDQSFGIPETVADLLE 316

Query: 281 ---------------------------SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
                                      S  S ++E ++  VF+++ +K +R  +++   R
Sbjct: 317 VEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLFSEVDVKLVFKEVTSKFLRRRIVEGGKR 376

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-N 372
            DGR  E +R I +  GLL R HGS+LF RG+TQ++ VVTLG ++  Q VD+L   +   
Sbjct: 377 SDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEFK 436

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            F + Y+F P   GEV R+GAPSRREIGHG LA RA+ P+LP    FPYT+R+ S ITES
Sbjct: 437 RFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPSENDFPYTVRVESTITES 496

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486
           +GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V D ++F      +ILSDI+G ED  
Sbjct: 497 NGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDAS 556

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAG + G+TA QMD+K+GGI+  +M  AL QA+ GR HIL EM K       +L
Sbjct: 557 GDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRTALLQARDGRKHILAEMLKCSPSPSKRL 616

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605
            ++ P + IM + P+++  +IG GGK ++ I+E+TG + ++  DDG VKI +  L+ IE 
Sbjct: 617 SKYAPLIHIMKVNPEKVNIIIGSGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLSSIEK 676

Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +  +I  +T VP V  IYK   +K V  +G FV      +GL HIS+LS+  + K  D  
Sbjct: 677 SISIISQLTMVPAVGDIYKNCEIKSVAPYGVFVEIAPGHEGLCHISELSSNWLPKAEDAF 736

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD V VKL++ + +G+++LS K +
Sbjct: 737 KVGDRVDVKLIEVNGKGQLRLSRKAL 762


>gi|296269051|ref|YP_003651683.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermobispora bispora DSM 43833]
 gi|296091838|gb|ADG87790.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermobispora bispora DSM 43833]
          Length = 773

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/719 (39%), Positives = 432/719 (60%), Gaps = 38/719 (5%)

Query: 1   MFDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQ 54
           M  VHT E       +  R ++ ETGR+ARQ+ G+ +A    ET+VL+     +  K+G 
Sbjct: 1   MEGVHTSEAVIDNGSFGTRTVRFETGRLARQATGSAVAYLDDETMVLSATTVSKQPKEGL 60

Query: 55  DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114
           DFFPLTV+ +ER YA GKIPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE Q++
Sbjct: 61  DFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQIV 120

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173
             V+    +    VV++ AAS +  L+GLPF GP+ G +V  I+G++V  P   E +  +
Sbjct: 121 ATVLAIHPDHLYDVVAINAASMSTQLAGLPFSGPIGGVRVGLIDGKWVAFPTYSELENAT 180

Query: 174 LDLFVSG--TQD---AVLMVELEANQLSEDVVLDAIIF--------GHNECKPVI----E 216
            D+ V+G   +D   A++MVE E+ + +  +V +  +         G    KP I    E
Sbjct: 181 FDMVVAGRVLEDGDVAIMMVEAESTRNTLKLVAEGAVAPTEEVVAQGLEAAKPFIKVLCE 240

Query: 217 AISKLAKMCAKEP----IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           A  KLAK+  K P    I  D +D   + E +   +K +L  +  IP K  R  +I+ +K
Sbjct: 241 AQEKLAKVAGKAPGNYPIYPDYQD--DVYEAVCAAVKSELAAALTIPGKQERELEIERVK 298

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
                    E     E EI   F  +  +++R  +L++ +R+DGR  + +R ++A+V ++
Sbjct: 299 AIAAEKLLPEFEG-REKEIGPAFRALTRQLMRERVLNEGIRIDGRGPKDIRQLNAEVHVI 357

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + + TL     EQ +D+L+  +   +M +YNF P +TGEV R+G
Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQTIDTLNPERTKRYMHNYNFPPYSTGEVGRVG 417

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           AP RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAG
Sbjct: 418 APKRREIGHGALAERALLPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAG 477

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           VP+   VAGIAMGL+ +   ++ L+DI G ED +G MDFKVAGT   ITA+Q+D K+ GI
Sbjct: 478 VPLKDMVAGIAMGLIGENGKYVTLTDIIGAEDAMGDMDFKVAGTRDLITALQLDTKLDGI 537

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
              ++  AL+QA+  RL IL+ M + + ++   L    PR+  + +P D+I +VIG  GK
Sbjct: 538 PAEVLAGALKQARSARLAILDVMKEAI-DAPAPLNPNAPRILTLKVPVDKIGDVIGPKGK 596

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630
           +I  I E+TGA++ I+DDGT+ I ++  A  EAA  +I  I +  +PEV + Y G +VK+
Sbjct: 597 IINQIQEKTGAEITIEDDGTIYIGATDGASAEAASALINGIANPHMPEVGERYLGTIVKL 656

Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             FGAFV     +DGL+HISQ+      +R+    DV+  G+ + V++++ D RGK+ L
Sbjct: 657 AAFGAFVSLLPGKDGLLHISQIRKLYGGKRIDNVEDVLTVGEKIQVEVVEIDSRGKLSL 715


>gi|317967932|ref|ZP_07969322.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CB0205]
          Length = 680

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/673 (42%), Positives = 404/673 (60%), Gaps = 18/673 (2%)

Query: 36  GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95
           G+T VL T       ++G DF PL  +Y+ER YA G+IPG ++RRESRP E   LI+R+I
Sbjct: 5   GDTSVLVTATRSGG-REGIDFLPLICDYEERLYAAGRIPGSFMRRESRPPERATLIARLI 63

Query: 96  DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155
           DR +RPLF    +++ QV+   M  D    P V+++  AS A +L+ +PF GP+   +V 
Sbjct: 64  DRPMRPLFPSWLRDDMQVVATCMSLDERVPPDVLAVTGASLATLLAKIPFNGPMAAVRVG 123

Query: 156 YINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214
            +   ++LNP   E ++  LDL V+GT   V+MVE  ANQL E  V++AI FG+     +
Sbjct: 124 LLGDDFILNPSYREIERSELDLVVAGTPQGVIMVEAGANQLPEQDVIEAIDFGYEAVCEL 183

Query: 215 IEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
           I+    L K    E ++     +D+   + LE+E S+ I + L+   F   K  R +Q+D
Sbjct: 184 IKVQQTLLKELGIEQVIPEAQTVDATLPTFLEKECSKGIGDVLKQ--FSLTKAERDEQLD 241

Query: 270 DLKKKMVSYFSSEHS--------SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSET 321
            +K +     S            S N   + + ++ +  K++R  +++   R+DGR+ + 
Sbjct: 242 AIKAQAAEKISGLKDDDAVKVAVSSNGKALGNNYKALTKKLMRAQIVNDGKRVDGRNLDE 301

Query: 322 VRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           VR ISA  G+L +R HGS LF RG TQ +   TLGT  D Q +D L+ +    ++ HYNF
Sbjct: 302 VRPISAAAGVLPKRVHGSGLFQRGMTQVLSCATLGTPSDAQEMDDLNPSNEKTYLHHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   M +P RREIGHG LA RA+ PVLP    FPY LR+VSE   S+GS+SM +
Sbjct: 362 PPYSVGETRPMRSPGRREIGHGALAERALIPVLPSKESFPYVLRVVSECLSSNGSTSMGS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCGS+LALMDAGVP+  PV+G AMGL+K+G +  IL+DI G ED LG MDFKVAGT+ GI
Sbjct: 422 VCGSTLALMDAGVPLKAPVSGAAMGLIKEGSEVRILTDIQGIEDFLGDMDFKVAGTEKGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+QMDMKI G+    +  A+ QA+  RLHIL +M   + + R  L    PR+    I P
Sbjct: 482 TALQMDMKITGLEVKTVAEAINQARPARLHILEKMLAAIDKPRDVLSPHAPRLLSFRIDP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           + I  VIG GG+ I+GI E+T  K++I+D G V IAS   A  E A+ +I  +T      
Sbjct: 542 ELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQRIIEGLTRRVSEG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +++ G V +V+  GAFV     ++G++HISQLS  RV K  DVVK GD V V++ + D+R
Sbjct: 602 EVFSGAVTRVIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVVKVGDHVTVRVREIDNR 661

Query: 681 GKIKLSMKVVDQN 693
           G+I L+++ V Q 
Sbjct: 662 GRINLTLRGVPQQ 674


>gi|282881124|ref|ZP_06289811.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304928|gb|EFA97001.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
           CRIS 5C-B1]
          Length = 766

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/698 (39%), Positives = 421/698 (60%), Gaps = 24/698 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRTISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +P++NEIL SR++DR++RPLF   Y  E  V I ++  D    P  ++ +
Sbjct: 64  FPGGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVYVQIMLLSADGVDQPDALAGL 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PF+  +   +V  ING+YV+NP  ++     +DL V  T+D ++MVE E
Sbjct: 124 AASAAMACSDIPFDFYISEVRVARINGEYVVNPTFEQMKSADMDLMVGATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++SE  +++A+   H   KP+     +L K   K+  V    D    +E++ Q + ++
Sbjct: 184 MNEVSELDLIEALKAAHEAIKPMCTVQEELNKELGKD--VKREYDHEVNDEDLRQQMNDE 241

Query: 252 LRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWN-------EGEIVSVFEDIQ 299
           L    +   K    KQ      D +    +  + + H+            E    ++D+ 
Sbjct: 242 LYQPAYDITKQALPKQERHDAFDKIIADFLEKYDAAHADLTEEELEEKHAEATRYYDDVL 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+TQ++   TLGT+ D
Sbjct: 302 KNAMRRCILDEGKRLDGRKTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P+   F
Sbjct: 362 EKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D ++ILS
Sbjct: 420 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYVILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HIL +M +
Sbjct: 480 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILGKMLE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594
            + E R ++    PR+E   IP + I  +IG GGK+I+ + E TGA + ID+    G ++
Sbjct: 540 TMPEPRSEMKPQVPRIEAFEIPKEFIGAIIGPGGKIIQQMQEDTGATITIDELDGVGKIQ 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++ +   I++A   I+ I  +PE+ ++Y+G V  +M +G FV     +DGL+HIS++  
Sbjct: 600 VSAPNKEAIDSAIAKIKGIVAIPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDW 659

Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +R+    D  + EGD + VKLL+ D + GK KLS KV+
Sbjct: 660 KRLETVEDAGIHEGDKIKVKLLEIDPKTGKYKLSRKVL 697


>gi|163787538|ref|ZP_02181985.1| putative polyribonucleotide nucleotidyltransferase
           [Flavobacteriales bacterium ALC-1]
 gi|159877426|gb|EDP71483.1| putative polyribonucleotide nucleotidyltransferase
           [Flavobacteriales bacterium ALC-1]
          Length = 751

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/692 (40%), Positives = 427/692 (61%), Gaps = 17/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD  +F PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-VNFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD E  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDPEVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE P+  A+V  ING++++NP   + ++  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECPISEARVGRINGEFIINPTFAQLEESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249
            +++SE+ + DAI F H   K    A  KLA+   K+ +      ++   LE+++  M  
Sbjct: 194 MDEISEEEMADAIKFAHEHIKVQCAAQVKLAEAFGKKAVREYEPEREDKDLEKKVHDMAY 253

Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           + +  ++     K+ R      +K+ + + FS E      G +   +   +   +R + L
Sbjct: 254 DKVYAIAKAGSAKHERSAAFQQIKEDIKATFSEEELEDYGGLVSDYYRKAEKAAIRDLTL 313

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D+ +R+DGR +  +R I  +V  L  THGSS+F RG+TQA+  VTLGT  D   +D  S 
Sbjct: 314 DEGLRLDGRKTTEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSRDANQIDMPSQ 373

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                F +HYNF P  TGE   +   SRRE+GHG LA+RA+  ++P     PYT+R+VSE
Sbjct: 374 EGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMVPDDC--PYTVRVVSE 431

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDEDHL 486
           + ES+GSSSMATVC  ++A+MDAGV ++KPV+GIAMGL+ D D   + +LSDI GDEDHL
Sbjct: 432 VLESNGSSSMATVCAGTMAMMDAGVQMTKPVSGIAMGLISDADSGKYAVLSDILGDEDHL 491

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT  GITA QMD+K+ G+S  I+V ALQQA+ GRLHIL +++  +++   ++
Sbjct: 492 GDMDFKVTGTADGITACQMDIKVKGLSYEILVNALQQARDGRLHILEKLTDTIAQPNAEV 551

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601
            E  P +    IP + I  +IG GGKVI+ + ++T   + I++D     G V+I      
Sbjct: 552 KEHAPTMITRRIPNEFIGALIGPGGKVIQEMQKETETTIVINEDPVTEEGIVEILGVGKT 611

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659
            I+A    I SI   PEV  +Y+ +V+K++DFGA V +  A   + L+H+S+L+ ER   
Sbjct: 612 GIDAVMAKIDSILFKPEVGSVYEVKVIKMLDFGAVVEYMEAPGNEVLLHVSELAWERTEN 671

Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
            SDVV  GD   VK    D R  K K+S K +
Sbjct: 672 VSDVVNMGDVFDVKYFGLDKRTRKEKVSRKAI 703


>gi|308235438|ref|ZP_07666175.1| polynucleotide phosphorylase/polyadenylase [Gardnerella vaginalis
           ATCC 14018]
 gi|311114219|ref|YP_003985440.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           ATCC 14019]
 gi|310945713|gb|ADP38417.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           ATCC 14019]
          Length = 914

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 290/715 (40%), Positives = 433/715 (60%), Gaps = 41/715 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+    L  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI----SKLAKMCAKEPI 230
           A+ M+E  A + + +++ +          +  G    KP I+ I    ++L ++ AKE  
Sbjct: 198 AIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKVICDAQNELKRIAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  +E+   I E    DL  +  I EK  R  +I ++K+ + +  + E +  
Sbjct: 256 TKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDM 315

Query: 287 N----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +    E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 316 DDEEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ VD+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+ 
Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            ALQQA   R  IL  +++ + +   ++  F PR+    IP D+I  VIG  GK+I  I 
Sbjct: 556 AALQQAHEARATILEVINECI-DCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E+TGA++ I+DDGTV I+S      + A+E+I SI +  +P+  + + G+VVK   FGAF
Sbjct: 615 EETGAEIAIEDDGTVYISSEGGEAAQKAKEIIDSIANPRIPKAGETFTGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           V+     DGL+HISQ+      ER+    DV+KEGD V V +   D+RGKI L++
Sbjct: 675 VNLTPGSDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAI 729


>gi|89889343|ref|ZP_01200854.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           BBFL7]
 gi|89517616|gb|EAS20272.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           BBFL7]
          Length = 748

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/677 (41%), Positives = 424/677 (62%), Gaps = 10/677 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G  + +ETG +A+Q+ G+V+ T G+ ++L TVV       G DF PLTV+Y+E+  A GK
Sbjct: 15  GPDITIETGALAKQAHGSVVITCGKAMLLGTVVSSYK-STGLDFLPLTVDYREKFAAAGK 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP + E+L  R++DR +RPLF K Y  E QV+I +M HD E  P  ++ +
Sbjct: 74  YPGGFFKREARPNDGEVLTMRLVDRVLRPLFPKDYHAEVQVMIQLMSHDPEVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS LPFE  +   +V  ++G++V+NP   + +   L++ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDLPFECAISEVRVARVDGEFVINPSYAQLEAADLEMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249
             ++SE+ ++ AI   H   K    A   LA+   K+ +      K+ + +E +++++  
Sbjct: 194 MEEISEEEMIAAIKAAHEAIKDQCAAQIALAEQVGKKEVREYEGEKEDADIEAKVAELAY 253

Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           + +  V+     K+ R     ++K+++ + FS E  + N   I   F     K VR V+L
Sbjct: 254 QKVYDVAQKGSAKHERSAAFSEIKEEIKATFSEEDQAENGDLISKYFNKTHKKAVRDVLL 313

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++ +R+DGR +  +RDI  +V  L  THGS++F RG+TQA+  VTLGT  D   +D  S 
Sbjct: 314 NEGIRLDGRKTTDIRDIWCEVDYLPSTHGSAIFSRGETQALATVTLGTSRDANVIDMASQ 373

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                F +HYNF P +TGE   +   SRREIGHG LA+RA+  +LP+    PYT+R+VSE
Sbjct: 374 EGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKNMLPE--DLPYTVRVVSE 431

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ES+GSSSMATVC  ++A+MDAG+P+ KPV+GIAMGL+ DGD + +LSDI GDEDHLG 
Sbjct: 432 VLESNGSSSMATVCAGTMAMMDAGLPMKKPVSGIAMGLITDGDKYAVLSDILGDEDHLGD 491

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKV GT+ GITA QMD+K+ G+S  I+  AL QA+ GR+HIL +++  ++     +  
Sbjct: 492 MDFKVTGTEDGITACQMDIKVKGLSYEILTNALMQARDGRMHILGKLTDTIAAPAADVKP 551

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEA 605
             P++E M I    I  VIG GGKVI+ + ++T   +NI +D   G ++IA +  A+IEA
Sbjct: 552 HAPKMESMEIEGKYIGAVIGPGGKVIQEMQKETETVINIKEDGEMGIIEIAGTDRAKIEA 611

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E I +I   P V  +Y+ +VVK++DFGA V F   ++ L+H+S+   +R+   S V+K
Sbjct: 612 ALEKISNIIFEPVVGSVYEVKVVKMLDFGAVVEFKPGKETLLHVSEFDYKRIEDPSTVLK 671

Query: 666 EGDTVWVKLLDFDDRGK 682
            GD + VK +  D R K
Sbjct: 672 VGDVLDVKYMGVDPRTK 688


>gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 713

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/707 (39%), Positives = 431/707 (60%), Gaps = 33/707 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG +A+Q+DG+ +    +T++LATVV  +  K+  +F PLTV+Y+E+  A GK
Sbjct: 14  GRSIIIETGELAKQADGSAIVRLDDTMLLATVVVSKETKNETNFLPLTVDYREKYSAGGK 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE RP++ EIL  R++DR +RP F + +K E Q++I+++ +D    P  ++ +
Sbjct: 74  IPGGFIKREGRPSDEEILTMRLVDRVLRPTFPEWFKKEIQIMISLLSYDKTVLPDGLAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AAS AL ++G+PF GP+   ++      +++NP LD+  +  +DL V  + ++++M+E E
Sbjct: 134 AASTALSVAGVPFNGPISEIRIIRSKRNFIINPSLDQLKEADIDLIVGASMNSIIMIEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++ E   L+ II  H E +  IEA  +L+K  +    +      SK     ++ +KE+
Sbjct: 194 MKEIKESEFLNTIIHAHEEIQSQIEAQIRLSKKLSNNSSLFFEDQKSKKYNPENESLKEE 253

Query: 252 L-----------------RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           L                 + + FI EK +    +++ KKK ++    E       +    
Sbjct: 254 LFSFSYEKIEKIYSNSLDKKTRFIQEKII----LNNFKKKFLTEEKIEKEEAIIDQF--- 306

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +E+I+ KV R ++L+K +R+DGR S+ +R I + V  L   HGS+LF RG+TQ++  VTL
Sbjct: 307 YEEIKKKVTRNLILEKGIRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQSLTTVTL 366

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+  D   +D++    +  F +HYNF P +TGE+  +   SRREIGHG LA+RA+  ++P
Sbjct: 367 GSSLDANKIDNVVMENQEKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQRALKNIIP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
                PYT+R+VS+I ES+GSSSMATVC +SLALMDAG+ I  PV+GIAMGL  + +  I
Sbjct: 427 NN---PYTIRVVSDILESNGSSSMATVCAASLALMDAGISIKNPVSGIAMGLFMENEKKI 483

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKRGRLHILN 533
           I+SDI G+EDH G +DFK+ GT  GITA QMD+ K  G++ +++   L+QA  GR+ IL 
Sbjct: 484 IISDIIGEEDHFGDLDFKITGTQYGITACQMDVKKTQGLTYDLLNQILKQALEGRIFILR 543

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DD 590
           +M +VL E R ++    P++    IP D I +VIG GGKVI+ I   T   + I+   D 
Sbjct: 544 KMLEVLPEYRKKMKPNAPKIYTFNIPKDFIGSVIGTGGKVIQEIQSCTNTNILIEEKGDF 603

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G ++I      +IE A + I+ IT VPE+ KIYK +V  + DFGAFV      +GL+HIS
Sbjct: 604 GYIEIIGHDDEKIEKAIDRIKQITFVPELGKIYKAKVKSIKDFGAFVEIAKGVEGLLHIS 663

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
           ++  +R+ +  + +  GD V VK +  D++  K+KLS KV+    GK
Sbjct: 664 EIGWKRLNRIEEELHIGDIVDVKFMGMDEKNKKMKLSRKVLLPRPGK 710


>gi|227488675|ref|ZP_03918991.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091336|gb|EEI26648.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 745

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/717 (40%), Positives = 433/717 (60%), Gaps = 43/717 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DG+V A   E T++LAT     + ++G DFFPLTV+ +ER Y
Sbjct: 25  DFGTRTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMY 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+ + IL  R+IDR +RP F K  +NE Q +I VM  D      V
Sbjct: 85  AKGKIPGSFFRREGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFYDV 144

Query: 129 VSMVAASAALMLSGLPFEGPVVG------AQVDYINGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++ AASAA  LSGLP  G V G      A  D+ +GQ+V  P +++ + +L ++ V+G 
Sbjct: 145 VAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVAGR 204

Query: 182 QD--------AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----L 221
           +         A++MVE  A +   + V D         +  G    KP I+ + +    L
Sbjct: 205 RVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQDQL 264

Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           +K+ AK+    PI  D  D     +    S+ I E + +           + +D + +K+
Sbjct: 265 SKLAAKDKKEFPIFPDYTDEILEAVRTSASKKIGEIMSIPGKQERDTATAEHMDQVVEKL 324

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +  F  E  +  E +I + +  +  ++VR  +L +  R+DGRD + +RD+S +V L+ R 
Sbjct: 325 LPKFEEEDETA-EKKIRAAYNAVTKEIVRHRILTEGFRIDGRDVKQIRDLSVEVELVPRA 383

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS+LF RG+TQ + V TL   + EQ +DSLS      ++ HYNF P +TGE  R+G+P 
Sbjct: 384 HGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTSKRYIHHYNFPPYSTGETGRVGSPK 443

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+
Sbjct: 444 RREIGHGALAERALLPVIPSKEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPL 503

Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 504 KAPVAGIAMGLVSDKIDGKMHYTALTDILGAEDAFGDMDFKVAGTSEIVTALQLDTKLDG 563

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  N++  ALQQA   RL IL+ M++V+ E   ++ +F PR+  + +P  +I  VIG  G
Sbjct: 564 IPSNVLAAALQQAHEARLEILDTMAQVIEEPD-EMSDFAPRITSIKVPVSKIGEVIGPKG 622

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K I  I E+TGA V+I++DGTV +++++ A  +AA E I ++ +  +P+V + + G VVK
Sbjct: 623 KNINAITEETGADVSIEEDGTVYVSATTGAAADAAIEKINAVANPQMPKVGERFLGTVVK 682

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           + +FGAFV     RDGL+HIS+L   +R+ K  DV+  G+ V V++ D D+RGKI L
Sbjct: 683 IANFGAFVSILPGRDGLIHISKLGGKKRIEKVEDVINVGEKVEVEIADIDNRGKISL 739


>gi|118471281|ref|YP_886993.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium smegmatis
           str. MC2 155]
 gi|187610287|sp|A0QVQ5|PNP_MYCS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118172568|gb|ABK73464.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mycobacterium smegmatis str. MC2
           155]
          Length = 763

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/714 (40%), Positives = 430/714 (60%), Gaps = 41/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A    ET++L+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGSAVAYLDDETMLLSATTASKNPKDHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AAS +  L+GLPF GPV GA++  I+G +V  P +++ ++   D+ V+G        
Sbjct: 142 AINAASMSTQLAGLPFSGPVGGARIALIDGTWVAFPTVEQLERAVFDMVVAGRIVGDGDS 201

Query: 181 TQDAVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAIS--------KLAKM 224
              A++MVE EA +   ++V        +A++  G    KP I+A+         + AK 
Sbjct: 202 ADVAIMMVEAEATENVVELVAGGAQAPTEAVVAEGLEAAKPFIKALCAAQQELADRAAKP 261

Query: 225 CAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
             + P+  D +  + + + ++ +  E L  +  I  K  R  + D++K +++   + E  
Sbjct: 262 AGEYPVFPDYE--ADVYDAVASVATEALAEALTIAGKTERNDRTDEIKVEVLERLA-EPY 318

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  E EI + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 319 AGREKEIGAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVIPRAHGSALFERG 378

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 379 ETQILGVTTLDMIKMAQQIDSLGPENTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL 438

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAM
Sbjct: 439 AERALVPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAM 498

Query: 465 GLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GLV D  D        ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   +
Sbjct: 499 GLVSDDVDVDGKVEKRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQV 558

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QAK  RL IL+ M++ +     ++  + PR+  + +P D+I  VIG  GK+I  
Sbjct: 559 LAGALSQAKDARLTILDVMAEAIDRPD-EMSPYAPRITTIKVPVDKIGEVIGPKGKMINS 617

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P+V + + G VVK  DFG
Sbjct: 618 ITEETGAQISIEDDGTVFVGAADGLSAQAAIDKINAIANPQLPKVGERFLGTVVKTTDFG 677

Query: 635 AFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           AFV     RDGLVHIS+L   +R+AK  DVVK GD + V++ D D+RGKI L +
Sbjct: 678 AFVSLLPGRDGLVHISKLGKGKRIAKVEDVVKVGDKLRVEIADIDNRGKISLVL 731


>gi|260910888|ref|ZP_05917531.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634996|gb|EEX53043.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 741

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 280/699 (40%), Positives = 427/699 (61%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +P +NEIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ +
Sbjct: 73  FPGGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSADGVDQPDALAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AAS+A+  S +PF+  +   +V  +NG+YV+NP  ++  +  +D+ V  T+D ++MVE E
Sbjct: 133 AASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFEQMKEADMDIMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            ++++E  ++ A+   H   KP+     +LAK   K+  V    +    +E++ + + ++
Sbjct: 193 MDEVTEQDLIQALKVAHEAIKPMCTMQEELAKELGKD--VKREYEHEVNDEDLRKQMNDE 250

Query: 252 LRVSCFIPEKYVRCKQ-IDDLKKKMVSYFSSEHSSWNEGEIVS------------VFEDI 298
           L    +   K    KQ   D   K+V+ F  ++ + N  ++ +             ++D+
Sbjct: 251 LYQPVYDVTKQALAKQERHDAFDKIVTDFLEKYDAENTEKLTAEELEEKHALAARYYDDV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+TQ++   TLGT+ 
Sbjct: 311 LRDAMRRCILDEGKRLDGRKTDEIRPIWCEVNSLPMPHGSAIFTRGETQSLSTCTLGTKL 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P  A 
Sbjct: 371 DEKMVDDVLDKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 428

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   + + IL
Sbjct: 429 YPYTVRVVSQILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGLIKNPGEEKYAIL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HIL +++
Sbjct: 489 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILGKLT 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593
           + ++E R +L    PR+  + IP + I  VIG GGK+I+ + E TG  + ID+    G V
Sbjct: 549 ETIAEPRPELKPQVPRIVQIEIPKEFIGAVIGPGGKIIQQMQEDTGTTITIDEVDGKGKV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++   A I+AA   IR+I  VPEV +IY+G V  VM +G FV     +DGL+HIS++ 
Sbjct: 609 QVSAPDKASIDAALSKIRAIVAVPEVGEIYEGTVRSVMPYGCFVEIMPGKDGLLHISEID 668

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    +  +KEGD + VKLLD D + GK KLS +V+
Sbjct: 669 WKRLETVEEAGIKEGDKMQVKLLDIDPKTGKYKLSRRVL 707


>gi|332291156|ref|YP_004429765.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169242|gb|AEE18497.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 741

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/694 (40%), Positives = 441/694 (63%), Gaps = 21/694 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD  DF PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEAKD-LDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  +NG++++NP R   ++  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMSQMI 248
            +++SE+ + DAI F H+  K    A  +LA+   K+ +     + KD + L++++  M 
Sbjct: 194 MDEISEEEMADAIKFAHDHIKVQCAAQLRLAEAFGKKEVREYPAERKD-ADLKQKVHDMA 252

Query: 249 KEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRTV 306
            + +  ++     K+ R     ++K+++ + FS E    + G++VS  +   +   +R +
Sbjct: 253 YDKVYAIAQAGSAKHERSAAFKEIKEEIKASFSEEELE-DFGDLVSKYYRAAEKAAIRDL 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
            L++ +R+DGR +  +R I ++V  L   HGS++F RG+TQA+  VTLGT  D   +D  
Sbjct: 312 TLNEGLRLDGRKTTEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMP 371

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S     +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P  A  PYT+R+V
Sbjct: 372 SHEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIP--ADCPYTVRVV 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISGDED 484
           SE+ ES+GSSSMATVC  ++A+MDAG+ ++KPV+GIAMGL+ DG    + +LSDI GDED
Sbjct: 430 SEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDGASGKYAVLSDILGDED 489

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+K+ G+S  I+V ALQQA+ GRLHIL+++++ ++  R 
Sbjct: 490 HLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALQQARAGRLHILDKITETIAAPRE 549

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSS 599
            + E+ P++  + IP + I  +IG GGKVI+ + ++TG  + I++D     G V+I  + 
Sbjct: 550 DVKEYAPKMVGVRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIVEILGTG 609

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657
              I A    I SIT  P V   YK +V+K++DFGA V +  A   + L+H+S+L+ ER 
Sbjct: 610 QEGINAVLAKIDSITFKPVVGNTYKVKVIKMLDFGAVVEYLDAPGNEVLLHVSELAWERT 669

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
              SDVV  GD + VK    D R  K K+S K +
Sbjct: 670 ENASDVVSMGDELDVKYFGIDKRTRKEKVSRKAL 703


>gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
 gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
          Length = 713

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/696 (41%), Positives = 438/696 (62%), Gaps = 26/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V+   G+T++LATV   +    G DF PL+V+Y+E+  A G+
Sbjct: 13  GRTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLSVDYKEKYAAFGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+L+RE R ++ EIL+SR++DR++RPLF   +  ET V + ++  D E  P  ++ +
Sbjct: 73  FPGGFLKREGRASDYEILVSRLVDRALRPLFPDDFHAETFVNVMLVSSDGEDMPDALAGL 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I+GQ+V+NP   +     L++ V+ T D ++MVE E
Sbjct: 133 AASAALAVSDVPFNGPISEVRVARIDGQFVINPTFAQLATADLEIMVAATIDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECK-------PVIEAISKLAK--MCAKEPIVIDSKD-FSKLE 241
             ++SE+V+L+A+   H   K        ++EA+ K  K   C +E      KD ++K  
Sbjct: 193 MKEVSEEVLLEAMKVAHEAIKVHCQVQLELMEAVGKTVKRVYCHEENDEDLKKDIWAKTY 252

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +++       +  SC   +K+ R      +K + ++    E ++  +G I   + +++ +
Sbjct: 253 DKVYA-----VAASCNT-DKHSRVDNFKAIKDEYIAALEPEVATEKKGLIGKYYHEVEKE 306

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD+  R+DGR +  +R I ++V  L   HGS++F RG+TQ++  VTLGT+ DE+
Sbjct: 307 AMRRSILDEGKRLDGRKTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKMDEK 366

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            VD      +  F++HYNF P +TGE        RRE+GHG LA RA+  ++P+   +PY
Sbjct: 367 LVDDALFKGKERFLLHYNFPPFSTGEAKASRGVGRREVGHGNLALRALKNMIPE--NYPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
            +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+ +  G +F +LSDI
Sbjct: 425 VVRVVSDILESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISENKGKNFAVLSDI 484

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+HIL ++ + L
Sbjct: 485 LGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILETALNQAKAGRMHILGKIQETL 544

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIA 596
              R  +    PR+ +M IP + I  VIG GGK+I+ +  +TGA + I+   D G V+IA
Sbjct: 545 EAPREDMKPNAPRIIVMMIPKEMIGAVIGPGGKIIQNMQVETGAVITIEEVGDQGRVEIA 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +++ A I+AA   I+ I  +PE+ + Y  +V  VM +GAFV F   ++GL+HIS++  +R
Sbjct: 605 ANNKAAIDAAIAKIKGIVAIPEIGETYPSKVKSVMPYGAFVEFMPGKEGLLHISEIDWKR 664

Query: 657 VAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +       +KEGD + VKLL+ D + GK KLS K +
Sbjct: 665 IETMDQAGIKEGDMIDVKLLEIDQKTGKFKLSRKAL 700


>gi|145593929|ref|YP_001158226.1| polynucleotide phosphorylase/polyadenylase [Salinispora tropica
           CNB-440]
 gi|187611287|sp|A4X4P8|PNP_SALTO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145303266|gb|ABP53848.1| Polyribonucleotide nucleotidyltransferase [Salinispora tropica
           CNB-440]
          Length = 785

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 285/704 (40%), Positives = 417/704 (59%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     R  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTRVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEHFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D      VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ-----DA 184
           + AAS +  LSGLPF GP+   ++ +I+G +V  P  +E  + + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELVRATFDMVVAGRALPDGDVA 199

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228
           ++MVE EA   +  +V D         +  G    KP I     A S+LA++ AK     
Sbjct: 200 IMMVEAEATAHTAKLVADGASAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D  D   + + ++++ +ED+  +  I  K  R + +D +K + V           E
Sbjct: 260 PVFLDYSD--DVYDAVTELAREDVAEALKIAGKADREEALDRIKARAVEELGPRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ +    +    VR+ +L ++VR+DGR    +R ++A+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAALRSLTKSEVRSRVLREQVRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 MGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 D----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D       ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVEGKTRYVTLTDILGAEDAFGDMDFKVAGTQEFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL  M   + E+   + ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 YEARQTILEVMQAAI-EAPATMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA E I  I +  +P+V   + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPAAQAAVERINGIANPTLPKVGDRFLGTVVKTAAFGAFISLLPG 675

Query: 643 RDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDQRGKIYL 719


>gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 463

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/459 (54%), Positives = 337/459 (73%), Gaps = 10/459 (2%)

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           M  + ++ +R +  I +K  R   +   K+++    S E     +  + S  + +++ V+
Sbjct: 1   MKGLGEDKMRAAYAITDKQQRVAAVSAAKEEIKGQLSEEQ--LEDANLGSALKKLESTVL 58

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++  K R+DGR  + VR I ++  +L RTHGSSLF RG+TQA+VV TLGT +DEQ +
Sbjct: 59  RADVVKNKRRIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQII 118

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FPYT+
Sbjct: 119 DALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTI 178

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSDISGD 482
           R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV +D  ++ IL+DI GD
Sbjct: 179 RLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGEYAILTDILGD 238

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL+EM K LSE+
Sbjct: 239 EDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALAQAKDGRMHILSEMGKALSEA 298

Query: 543 RLQLGEFT---PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
               GEF+   PR+E+M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G +KIAS +
Sbjct: 299 ----GEFSVHAPRIEMMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGLIKIASPN 354

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I+ A +MI SI   PE  K+YKG+VVK++DFGAFV+F G RDGLVH+SQ+   R+  
Sbjct: 355 GESIQKAYDMIHSIVAEPEEGKVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNH 414

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG+ +
Sbjct: 415 PSDVLKEGQEVFVKLLGFDDRGKVRLAMKMVDQETGEEV 453



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 23/193 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVY----DRSLKD---GQDFFPLTVNYQER 66
           RP++ ET  + R + G+ L T GET  L         D  + D   G       ++Y   
Sbjct: 78  RPIQSETSVLPR-THGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRSNFLLHYNFP 136

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLES 124
            Y+VG++      R   P   EI   ++  R+++ +      +    +++  + + +  S
Sbjct: 137 PYSVGEVG-----RVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRLVSEITESNGSS 191

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL--DEDQ-GSLDLFV 178
           S  + S+   S ++M +G+P + PV G  +  +   +G+Y +   +  DED  G +D  V
Sbjct: 192 S--MASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGEYAILTDILGDEDHLGDMDFKV 249

Query: 179 SGTQDAVLMVELE 191
           +GT++ +  ++++
Sbjct: 250 AGTENGITSLQMD 262


>gi|227542327|ref|ZP_03972376.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181927|gb|EEI62899.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 749

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 291/717 (40%), Positives = 432/717 (60%), Gaps = 43/717 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DG+V A   E T++LAT     + ++G DFFPLTV+ +ER Y
Sbjct: 29  DFGTRTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMY 88

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+ + IL  R+IDR +RP F K  +NE Q +I VM  D      V
Sbjct: 89  AKGKIPGSFFRREGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFYDV 148

Query: 129 VSMVAASAALMLSGLPFEGPVVG------AQVDYINGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++ AASAA  LSGLP  G V G      A  D+ +GQ+V  P +++ + +L ++ V+G 
Sbjct: 149 VAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVAGR 208

Query: 182 QD--------AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----L 221
           +         A++MVE  A +   + V D         +  G    KP I+ + +    L
Sbjct: 209 RVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQDQL 268

Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           +K+ AK+    PI  D  D     +    S+ I E + +           + +D + +K+
Sbjct: 269 SKLAAKDKKEFPIFPDYTDEILEAVRTSASKKIGEIMSIPGKQERDTATAEHMDQVVEKL 328

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +  F  E  +  E +I + +  +  ++VR  +L +  R+DGRD + +RD+S +V L+ R 
Sbjct: 329 LPKFEEEDETA-EKKIRAAYNAVTKEIVRHRILTEGFRIDGRDVKQIRDLSVEVELVPRA 387

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS+LF RG+TQ + V TL   + EQ +DSLS      ++ HYNF P +TGE  R+G+P 
Sbjct: 388 HGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTSKRYIHHYNFPPYSTGETGRVGSPK 447

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+
Sbjct: 448 RREIGHGALAERALLPVIPSKEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPL 507

Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PV GIAMGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 508 KAPVTGIAMGLVSDKIDGKMHYTALTDILGAEDAFGDMDFKVAGTSEIVTALQLDTKLDG 567

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  N++  ALQQA   RL IL+ M++V+ E   ++ +F PR+  + +P  +I  VIG  G
Sbjct: 568 IPSNVLAAALQQAHEARLEILDTMAQVIEEPD-EMSDFAPRITSIKVPVSKIGEVIGPKG 626

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K I  I E+TGA V+I++DGTV +++++ A  +AA E I ++ +  +P+V + + G VVK
Sbjct: 627 KNINAITEETGADVSIEEDGTVYVSATTGAAADAAIEKINAVANPQMPKVGERFLGTVVK 686

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           + +FGAFV     RDGL+HIS+L   +R+ K  DV+  G+ V V++ D D+RGKI L
Sbjct: 687 IANFGAFVSILPGRDGLIHISKLGGKKRIEKVEDVINVGEKVEVEIADIDNRGKISL 743


>gi|299142521|ref|ZP_07035652.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
 gi|298575956|gb|EFI47831.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
          Length = 748

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/698 (40%), Positives = 418/698 (59%), Gaps = 24/698 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 64  FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PFE  +   +V  ING+YV++P   +     +DL V+ T+D ++MVE E
Sbjct: 124 AASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQQMADADMDLMVAATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  ++ A+       KP+ E   +L+K    +  V    D    +E++ + IK +
Sbjct: 184 MKEVSEQDLIGALKAAAEAIKPMCELQEELSKELGTD--VKREYDHEINDEDLREQIKNE 241

Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDIQ 299
           L    +       EK+ R    D +    +  + + H+  +E        E    +ED+ 
Sbjct: 242 LYKPVYDINKQALEKHARHDAFDKILADFLEKYDAAHNELSEEDLEEKHAEATRYYEDVM 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT+ D
Sbjct: 302 RDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P+   +
Sbjct: 362 EKMVDDVLEKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DY 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + ILS
Sbjct: 420 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN M +
Sbjct: 480 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594
            +SE R +L    PR+E   IP + I  +IG GGK+I+ + E TGA + ID+    G V 
Sbjct: 540 TISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEDTGATITIDETDGKGHVT 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++ +   I AA   I++I  VPEV ++Y+G V  +M +G FV     RDGL+HIS++  
Sbjct: 600 VSAPNKDSINAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPGRDGLLHISEIDW 659

Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +R+    +  +KEGD V VKL++ D + GK KLS +V+
Sbjct: 660 KRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVL 697


>gi|126663253|ref|ZP_01734251.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
           bacterium BAL38]
 gi|126624911|gb|EAZ95601.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
           bacterium BAL38]
          Length = 719

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 288/692 (41%), Positives = 423/692 (61%), Gaps = 20/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETGR+A+Q+DG+V+   G+TV+L TVV  R    G DF PLTV+Y+E+  A G+
Sbjct: 15  GRSITIETGRLAKQADGSVVVRIGKTVILGTVVSARKASPGIDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP+++E+L  R++DR +RPLF   Y  E QV+I +M HD +  P  ++ +
Sbjct: 75  FPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDEDVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAAL LS +PFE  +  A+V  I+G++++NP R   +   +D+ +  + D++ MVE E
Sbjct: 135 AASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMMIGASTDSIAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI------DSKDFSKLEEEMS 245
             ++SE  +L+AI F H   K  I A  +LA    K+ +        D   ++K++    
Sbjct: 195 MKEISEAEMLEAIKFAHEHIKVQIAAQERLATAFGKKEVRTYETEKSDDAIYAKVKAAAY 254

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVR 304
             I     ++     K+ R    D +K+++ + F+ E  + N G++VS  F     + VR
Sbjct: 255 DKI---YAIASKGSAKHERSAAFDAVKEEVKALFTEEELAEN-GDLVSKYFYKTNKEAVR 310

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            V LD   R+DGR +  +R I  +V  L   HGS+LF RG+TQA+   TLGT  +   +D
Sbjct: 311 NVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQID 370

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A+ PYT+R
Sbjct: 371 SPSEQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIP--AENPYTIR 428

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           IVSE+ ES+GSSSMATVC  +LALMDAGV + +PV+GIAMGL+ DG+ F +LSDI GDED
Sbjct: 429 IVSEVLESNGSSSMATVCAGTLALMDAGVQMIRPVSGIAMGLITDGERFAVLSDILGDED 488

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+KI G+   IM  AL QA+ GRLHIL ++++ L++   
Sbjct: 489 HLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEQALAQARDGRLHILGKLTETLAKPNT 548

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSSLA 601
            +    P++ +  IP   I  +IG GGKVI+ + + TG  +    +D+ G V+I  +   
Sbjct: 549 DVKVHAPKIIMRTIPGAFIGALIGPGGKVIQELQKATGTTIVINEVDEQGVVEILGTDPD 608

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659
            I A    I SI   P + + Y+ +V+K++DFGA V +  A   + L+H+S+L+ ER   
Sbjct: 609 GIAAVLAKIDSIIFKPAMGEAYEVKVIKMLDFGAVVEYTQAPGNEVLLHVSELAWERTEN 668

Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
            +DVV  GD   VK L  D +  K K+S K +
Sbjct: 669 VTDVVNMGDVFMVKYLGVDPKTRKEKVSRKAL 700


>gi|323343826|ref|ZP_08084053.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
           33269]
 gi|323095645|gb|EFZ38219.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
           33269]
          Length = 791

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/701 (40%), Positives = 430/701 (61%), Gaps = 29/701 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + +++EIL SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKASDSEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PF+GP+   ++  ING+YV++P   +  +  +D+ V  T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFDGPISEVRIARINGEYVVDPTFQQMKEADMDIMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++SE  ++DA+    +  KP+ +  ++L+K    +  V         +EE+ + I ++
Sbjct: 193 MNEVSEQDLIDALKVAADAIKPMCDLQTELSKEFGTD--VKREYCHEVNDEELREQINKE 250

Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNE-----GEIVSVFEDI 298
           L    +       +K+ R    D+L    +  + + H+   S +E      E    +ED+
Sbjct: 251 LYQPAYDITKQALDKHARQDAFDELITNFLEKYDAAHAESLSADELEEKHAEATRYYEDV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+T ++   TLGT+ 
Sbjct: 311 MRDAMRRCVLDEGKRLDGRKTDEIRPIWCEVSALPMPHGSAIFQRGETMSLSTCTLGTKM 370

Query: 359 DEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           DE+ VD +   G QR  F++HYNF P +TGE        RREIGHG LA R +   +P  
Sbjct: 371 DEKLVDDVLEKGYQR--FLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP-- 426

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFI 474
           A FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP++KPV+GIAMGL+K+   + + 
Sbjct: 427 ADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMAKPVSGIAMGLIKNPGEEKYA 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR +IL +
Sbjct: 487 VLSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREYILGK 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DG 591
           M + +SE R +L    PR+    IP + I  VIG GGK+I+ + E TGA + ID+    G
Sbjct: 547 MMETISEPRTELKPQVPRIVAFEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDEVDGVG 606

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V++++     I+AA   I+SI  VPEV ++Y+G V  VM +G FV     +DGL+HIS+
Sbjct: 607 KVQVSAPDKDAIDAALAKIKSIVAVPEVGEVYEGTVRSVMPYGCFVEIMPGKDGLLHISE 666

Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  +R+    +  +KEGD + VKL++ D + GK KLS +V+
Sbjct: 667 IDWKRLETVEEAGIKEGDKIQVKLMEIDPKTGKYKLSHRVL 707


>gi|302344869|ref|YP_003813222.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica ATCC 25845]
 gi|302149149|gb|ADK95411.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica ATCC 25845]
          Length = 742

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/699 (40%), Positives = 425/699 (60%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ +
Sbjct: 64  YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGVDQPDALAGL 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +P E      +V  +NG+YV+NP  ++  +  +DL V  T+D ++MVE E
Sbjct: 124 AASAALAASDIPIEHTTSEVRVARVNGEYVINPTFEQMKEADMDLMVGATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  ++ A+   H   KP+ E   +L+K C  +  V  + +    +EE+ + +++ 
Sbjct: 184 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKRAYEDEVNDEELREELRKA 241

Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFEDI 298
              +C+        +K  R +  D +K      + + H+  +E +       I   F D+
Sbjct: 242 TYDACYAQAQSGDDDKKHREETYDKIKSDFTEAYDAAHTDLSEDDLEEKHTLIDRYFADV 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q   +R  +LD   RMDGR ++ +R I  ++  L   HGSSLF RG+T ++   TLGT+ 
Sbjct: 302 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKM 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD++       F++HYNF P  TGE        RREIGHG LA R +   +P  A 
Sbjct: 362 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 420 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK  R HILN M+
Sbjct: 480 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAAREHILNIMT 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593
           + ++E R ++    PR+  + IP + I  VIG GGK+I+ + E+TGA + I++    G V
Sbjct: 540 ETIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEETGATITIEETDGVGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I++I  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 600 QVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 659

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    +  +KEGD + VKLL+ D + GK KLS +V+
Sbjct: 660 WKRLETVEEAGIKEGDKIKVKLLEIDPKTGKYKLSRRVL 698


>gi|298209020|ref|YP_003717199.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
           atlanticus HTCC2559]
 gi|83848947|gb|EAP86816.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
           atlanticus HTCC2559]
          Length = 741

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/696 (39%), Positives = 435/696 (62%), Gaps = 25/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +    D  DF PLTV+Y+E+  A G+
Sbjct: 15  GREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDDDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  +NG++V+NP R    +  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFVINPTRTQLAESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIK 249
            +++SE+ + +AI F H   K   EA  KLA+   K+    ++++++  + +E++++ + 
Sbjct: 194 MDEISEEEMTEAIKFAHEAIKVQCEAQVKLAEAFGKK----ETREYAAEREDEDLAKKVH 249

Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +      +        K+ R +   D+K ++++ FS E        I   +   +   +R
Sbjct: 250 DMAYDKVYAIAQAGSAKHERSQAFSDIKDEIIATFSEEEQEDFGSLISKYYYKAEKAAIR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + L++ +R+DGR +  +R I  +V  L   HGSS+F RG+TQA+  VTLGT  D   +D
Sbjct: 310 DLTLNEGLRLDGRKTTDIRPIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANMID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P+    PYT+R
Sbjct: 370 MPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVPEDC--PYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482
           +VSE+ ES+GSSSMATVC  ++A+MDAGV + KPV+GIAMGL+ D +   + +LSDI GD
Sbjct: 428 VVSEVLESNGSSSMATVCAGTMAMMDAGVQMKKPVSGIAMGLISDAESGKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL +++  +S+ 
Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTISQP 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597
              +  + P++  + IP + I  +IG GGKVI+ + ++TG  + I++D     G ++I  
Sbjct: 548 NEDVKSYAPKMVSVRIPNEYIGAMIGPGGKVIQELQKETGTTIVINEDPVTEEGIIEILG 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655
           +    I+A    I S+T  P+V  +Y+ +V+K++DFGA V +  A   + L+H+S+L+ E
Sbjct: 608 TGQEGIDAVLAKIDSVTFKPQVGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWE 667

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           R    SDVVK GD + VK    D R  K K+S K +
Sbjct: 668 RTENVSDVVKLGDIIDVKYFGIDKRTRKEKVSRKAL 703


>gi|212550826|ref|YP_002309143.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|226702596|sp|B6YRB0|PNP_AZOPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212549064|dbj|BAG83732.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 719

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/695 (41%), Positives = 435/695 (62%), Gaps = 24/695 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + LETG++A+Q+DGA++     T++LATV   +      DF PL V Y+E+  A G+
Sbjct: 14  GRTITLETGKLAKQADGAIVLRMNNTMILATVCVAKDTNPCVDFLPLQVEYKEKFSAFGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE R ++ EIL  R+IDR++RPLF + Y +E  V I +   D E  P  ++ +
Sbjct: 74  FPGGFTKREGRASDYEILTCRLIDRTLRPLFPRDYHSEVFVNIILFSSDGEDIPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I+G++ +NP   E  +  +D+ V  T D ++MVE E
Sbjct: 134 AASAALSVSTIPFNGPISEVRVARIDGKFKINPTFGELAKADMDIMVGATADNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            N++SE+ +L+AI   H   KP  +A  +LA++      + ++      +EE+   IK  
Sbjct: 194 MNEVSEEEMLEAIKAAHEAIKPQCKAQIELARIVGT--TIKNTYSHEVNDEELRSDIKTK 251

Query: 252 LRVSCFIPEKYVRCKQ---------IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           L    +   K  +CK          I++ KK+      SE   +    I   + +I+ +V
Sbjct: 252 LYDKVYAVAKSGQCKNKRIEAFQTIIEEYKKQFKEKELSEEKIFL---IKRYYYEIEKEV 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R  +LD+ +R+DGR +  +R I ++V  +   HGS++F RG+TQA+  VTLGT+ +E+ 
Sbjct: 309 MRRCILDENIRIDGRKTTEIRPIWSEVNPITGPHGSAIFTRGETQALATVTLGTKLNEKI 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +    +  F++HYNF P ATGE        RREIGHG LA RA+ P++P    +PY 
Sbjct: 369 IDDVLINDKERFLLHYNFPPFATGEARAQRGIGRREIGHGNLAHRALKPIIPN--NYPYV 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDIS 480
           +R+VS+I ES+GSSSMATVC  +L+LMDAGV I +PV+GIAMGL+  K+G  + ILSDI 
Sbjct: 427 IRVVSDILESNGSSSMATVCAGTLSLMDAGVQIKRPVSGIAMGLIFEKEGSKYAILSDIL 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA QMD+KI G+S  ++  AL QAK+GR +IL++M + + 
Sbjct: 487 GDEDHLGDMDFKVAGTKKGITATQMDIKIDGLSYEVLERALSQAKQGREYILDKMLETIP 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIAS 597
           E R  L   TP++EI+ IP + I +VIG GGK+I+ + E+TG  + I++    G ++I  
Sbjct: 547 EPRTDLKPHTPKIEIIIIPKEFIGSVIGPGGKIIQRLQEETGTTITIEEIEKMGRIEIFG 606

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +   I+AA   I+ I  VPEV +IY+G++  +M +GAF+ F   ++GL+HIS++S + +
Sbjct: 607 DNKKSIDAALTRIKGIVSVPEVGEIYEGKIRSIMPYGAFIEFLPGKEGLLHISEISWKHL 666

Query: 658 AKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
               +  + EGD + +KL+D D + GK KLS K++
Sbjct: 667 ESIEEAGLNEGDFIKIKLVDIDSKTGKFKLSHKIL 701


>gi|288801722|ref|ZP_06407164.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica D18]
 gi|288335764|gb|EFC74197.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica D18]
          Length = 742

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 280/699 (40%), Positives = 425/699 (60%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ +
Sbjct: 64  YPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGVDQPDALAGL 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASA+L  S +P E      +V  +NG+YV+NP  ++  +  +DL V  T+D ++MVE E
Sbjct: 124 AASASLAASDIPIEHTTSEVRVARVNGEYVINPTFEQMKEADMDLMVGATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE  ++ A+   H   KP+ E   +L+K C  +  V  + +    +EE+ + +++ 
Sbjct: 184 MDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKRAYEDEVNDEELREELRKA 241

Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFEDI 298
              +C+        +K  R +  D +K      + + H+  +E +       I   F D+
Sbjct: 242 TYDACYAQAQSGDDDKKHREETYDKIKSDFTEAYDAAHTDLSEDDLEEKHTLIDRYFADV 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q   +R  +LD   RMDGR ++ +R I  ++  L   HGSSLF RG+T ++   TLGT+ 
Sbjct: 302 QRDSMRRSVLDTGKRMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKM 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD++       F++HYNF P  TGE        RREIGHG LA R +   +P  A 
Sbjct: 362 DEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--AD 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +L
Sbjct: 420 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK  R HILN M+
Sbjct: 480 SDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAAREHILNIMT 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTV 593
           + ++E R ++    PR+  + IP + I  VIG GGK+I+ + E+TGA + I++    G V
Sbjct: 540 ETIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEETGATITIEETDGVGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I++I  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 600 QVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 659

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    +  +KEGD + VKLL+ D + GK KLS +V+
Sbjct: 660 WKRLETVEEAGIKEGDKIKVKLLEIDPKTGKYKLSRRVL 698


>gi|260400856|gb|ACX37015.1| polynucleotide phosphorylase/polyadenylase [Nonomuraea sp. ATCC
           39727]
          Length = 780

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/720 (39%), Positives = 435/720 (60%), Gaps = 39/720 (5%)

Query: 1   MFDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQ 54
           M  VHT E       +  R ++ ETGR+ARQ+ G+ +A    +T+VL+     ++ K+  
Sbjct: 1   MEGVHTAEAVIDNGSFGTRTIRFETGRLARQAAGSAVAYLDSDTMVLSATTASKTPKEQF 60

Query: 55  DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114
           DFFPLTV+ +ER YA G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+
Sbjct: 61  DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVV 120

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGS 173
             VM  + +    VV++ AAS +  L+GLPF GP+ G +V  I+GQ+V  P   E ++ +
Sbjct: 121 ATVMALNPDHLYDVVAINAASLSTQLAGLPFSGPIGGVRVALIDGQWVAFPTHPELERAT 180

Query: 174 LDLFVSGT-----QDAVLMVELEANQLSEDVVLDAIIF--------GHNECKPVI----E 216
            D+ V+G        A++MVE E+ + +  +V +  +         G    KP I    E
Sbjct: 181 FDMVVAGRVLDDGDVAIMMVEAESTKDTLKLVAEGAVAPTEETVAQGLEAAKPFIKVLCE 240

Query: 217 AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           A S++A++ AKE    P+ +D +  + +   +   IK +L  +  I  K  R  +++  K
Sbjct: 241 AQSRIARVAAKETAEYPVFLDYQ--ADVYAAVEAAIKTELAAALTIAGKQERENELEKTK 298

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
                    E     E EI + F  +  K++R  ++++ VR+DGR ++ +R +SA+V ++
Sbjct: 299 ALAAEKLLPEFEG-REKEISAAFRSVMKKLMRERVINEGVRIDGRGTKDIRALSAEVHVV 357

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + + TL     EQ +D+L+  +   +M +YNF P +TGE  R+G
Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQVIDTLNPERTKRYMHNYNFPPYSTGETGRVG 417

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S++AL+DAG
Sbjct: 418 SPKRREIGHGALAERALIPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMALLDAG 477

Query: 453 VPISKPVAGIAMGLVKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           VP+ + VAGIAMGL+ +GD  ++ L+DI G ED +G MDFKVAGT   ITA+Q+D K+ G
Sbjct: 478 VPLKEMVAGIAMGLIGEGDTHYVTLTDILGAEDAMGDMDFKVAGTKDVITALQLDTKLDG 537

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++  AL+QAK  RL IL+ M + + +S  ++    PR+  + +P D+I  VIG  G
Sbjct: 538 IPASVLAGALKQAKGARLAILDVMQEAI-DSPAEMNPTAPRIITIKVPVDKIGEVIGPKG 596

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K+I  I + TGA++ I+DDGT+ I ++     EAAR  I +I +  +PEV + Y G VVK
Sbjct: 597 KMINQIQDDTGAEITIEDDGTIYIGATDGPSAEAARSAINAIANPHMPEVGERYLGTVVK 656

Query: 630 VMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +  FGAF+     +DGL+H+SQ+      +R+    DV+  G+ + V++ + D RGK+ L
Sbjct: 657 IAAFGAFISLMPGKDGLLHVSQIRKLHGGKRIENVEDVMSVGEKIQVEIAEIDGRGKLSL 716


>gi|290957009|ref|YP_003488191.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces scabiei 87.22]
 gi|260646535|emb|CBG69632.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces scabiei 87.22]
          Length = 741

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/712 (40%), Positives = 427/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 79  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  IN Q+V  P   E +    D+ V+G   +D   
Sbjct: 139 AINAASASTQLAGLPFSGPIGGVRVALINNQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 198

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +  +V         + +  G +  KP I+ +        SK AK   +
Sbjct: 199 AIMMVEAEATEKTIQLVQGGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLASKAAKPTGE 258

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            P+ +D +D   + E +S  +K++L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 259 FPVFLDYQD--DVLEALSAAVKDELTQALTIAGKQDREAELDRVKGLAAEKLLPQFEG-- 314

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 315 ---REKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 371

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 372 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 431

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 432 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 491

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 492 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 551

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 552 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 610

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I +   ++ EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 611 DTGAEITIEDDGTIYIGAQQGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 670

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 671 SLLPGKDGLLHISQIRKLAGGKRVENVEDVVGVGSKVQVEIAEIDSRGKLSL 722


>gi|183601888|ref|ZP_02963257.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682802|ref|YP_002469185.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190378|ref|YP_002967772.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195784|ref|YP_002969339.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|254782707|sp|B8DVV8|PNP_BIFA0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183218773|gb|EDT89415.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620452|gb|ACL28609.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248770|gb|ACS45710.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250338|gb|ACS47277.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178101|gb|ADC85347.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793365|gb|ADG32900.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 873

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 290/715 (40%), Positives = 433/715 (60%), Gaps = 47/715 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           R ++ ETGR+ARQ+DGAV A   + ++VL+T     S K+  DFFPLTV+ +E+ YA GK
Sbjct: 21  RTVRFETGRLARQADGAVAAYLDDDSMVLSTTTAGSSPKENYDFFPLTVDVEEKMYAAGK 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + E S  V+++ 
Sbjct: 81  IPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPEDSYDVLALN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD-AVL 186
           AASA+ ++SGLPF GPV G ++  I+GQ+V  PR  E ++   ++ V+G    + D A+ 
Sbjct: 141 AASASTLISGLPFTGPVGGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVESGDVAIA 200

Query: 187 MVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPIVID 233
           M+E  A + + +++ D          +  G    KP I    +A ++L ++ AKE     
Sbjct: 201 MIEAGAGKNAWNLIYDEGQQKPDEEVVAGGLEAAKPFIKVLCDAQNELKRLAAKE----- 255

Query: 234 SKDFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           +++F+   E        + ++   DL  +  I EK  R ++I ++K+++    S E +  
Sbjct: 256 TREFTLFPEYTDDLYNRIDEIAHADLDEALSIAEKLPRQERIAEIKQRVKDTLSVEFTDM 315

Query: 287 NE----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +E     EI + F+++Q ++VR  +L +  R+DGR    +R +SA++ ++ R HGS+LF 
Sbjct: 316 DEMEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEIDVVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + + TL   + EQ +D+LSG     +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGITTLNMLKMEQQIDALSGPTTKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGI
Sbjct: 436 ALAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++ 
Sbjct: 496 AMGLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTADFITALQLDTKLDGIPADVLA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL+QA   R  IL  +++ + +   ++  F PR+    +P D+I  VIG  GK+I  I 
Sbjct: 556 GALKQAHEARKTILEVINECI-DGPAEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E TGA++ I+DDGTV I+S      E A+++I  I +  VP+  + YKG VVK   FGAF
Sbjct: 615 EDTGAEIAIEDDGTVYISSEGGEAAEKAKQIIDEIANPHVPQAGETYKGTVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           V+     DGL+HISQ+      +R+    DV+KEGD+V V +   DDRGKI L++
Sbjct: 675 VNLTPGIDGLLHISQIRNLADGQRIDAVEDVLKEGDSVEVVVQGVDDRGKISLAI 729


>gi|312194991|ref|YP_004015052.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EuI1c]
 gi|311226327|gb|ADP79182.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EuI1c]
          Length = 727

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/702 (40%), Positives = 430/702 (61%), Gaps = 33/702 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++ ETGR+A+Q+ G+V+A  G+T+VL+     ++ K+  DFFPLTV+ +ER YA G+I
Sbjct: 19  RTIRFETGRLAKQAAGSVVAYLGDTMVLSATTASKNPKENLDFFPLTVDVEERMYAAGRI 78

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D E+   VV++ A
Sbjct: 79  PGSFFRREGRPSEDAILTCRLIDRPLRPSFTKGLRNEIQVVATVLALDPETLYDVVAINA 138

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186
           ASA+ +L+GLPF GPV   +V Y++GQ+V  P   E  + + D+ V+G      +  A++
Sbjct: 139 ASASTLLAGLPFTGPVGATRVGYVDGQWVAFPTHAELARATFDMVVAGRVLEDDSDVAIM 198

Query: 187 MVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK--------LAKMCAKEPI 230
           MVE EA   +  ++ D         +  G    KP I  + +         AK   + P+
Sbjct: 199 MVEAEATPGTVALLADGAPAPTEDVVAAGLEAAKPAIRELCRAQRELAAAAAKPVREYPV 258

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            +D  D   + + ++  + ++L  +  I  K  R  ++D +K   V    S+     E E
Sbjct: 259 FLDYTD--DVLDVLTNAVGDELAAALRIAGKQERETELDRVKALAVEKVGSQFDG-REKE 315

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I + +  +  K+VR  +++  +R+DGR +  +R +SA+V  + R HGS+LF RG+TQ + 
Sbjct: 316 IGAAYRALTKKLVRKRVVEDGLRIDGRATTEIRALSAEVDYVPRVHGSALFERGETQILG 375

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TL     EQ +D+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA+ 
Sbjct: 376 VTTLAMLRLEQTIDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALL 435

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+++G
Sbjct: 436 PVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLIREG 495

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  N++  ALQQA+  RL 
Sbjct: 496 DAFVTLTDILGAEDAYGDMDFKVAGTREFVTALQLDTKLDGIPANVLAAALQQARAARLA 555

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+ M++ + E   ++ +  PRV  + IP D+I  VIG  GK+I  I   +GA++ ++DD
Sbjct: 556 ILDVMAEAI-EGPDEMSQHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVEDD 614

Query: 591 GTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           GT+ I ++     E AR  I +I +  +PEV + Y G +VK+ +FGAFV     +DGL+H
Sbjct: 615 GTIYIGAADGVSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGKDGLLH 674

Query: 649 ISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +S+L      +RV K  DV+  G  + V++ + D RGKI LS
Sbjct: 675 VSKLKQLSGGKRVEKVEDVLNVGQKLQVEITEIDSRGKISLS 716


>gi|319953765|ref|YP_004165032.1| polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
           DSM 14237]
 gi|319422425|gb|ADV49534.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
           DSM 14237]
          Length = 747

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/694 (40%), Positives = 427/694 (61%), Gaps = 23/694 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G  ++L TVV +    D  DF PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGNCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD    P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPEAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  +NG++V+NP R    +  L++ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVARVNGEFVINPTRAQLAESDLEMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEMSQMIK 249
            +++SE+V+ DAI F H   K  I A  +LA+   K+    ++++++  E  EE+ + I 
Sbjct: 194 MDEISEEVMADAIKFAHEAIKVQIAAQLRLAEAFGKK----ETREYATAEVNEELEKRIH 249

Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +     C+        K  R     ++K+++ + F+ E  +     +   +   + + VR
Sbjct: 250 DLAYDKCYAIAKKGTSKAERTNAFAEVKEEVKASFTEEEMAEFGHLVGGYYRKAEKEAVR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + L + +R+DGR ++ +R I  ++  L  THGS++F RG+TQA+  VTLGT  D   +D
Sbjct: 310 ELTLSEGLRLDGRKTDEIRPIWCEIDYLPSTHGSAIFTRGETQALATVTLGTSRDANKID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S     +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P  +  PYT+R
Sbjct: 370 MPSFEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRGLKGMIP--SDCPYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMATVC  ++ALMDAGV + +PV+GIAMGL+ DGD + +LSDI GDED
Sbjct: 428 VVSEVLESNGSSSMATVCAGTMALMDAGVKMKRPVSGIAMGLISDGDRYAVLSDILGDED 487

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  +S    
Sbjct: 488 HLGDMDFKVTGTSEGITACQMDIKIKGLSYEILVNALKQARDGRLHILGKITDTISTPAE 547

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSS 599
            +    P++    IP + I  +IG GGKVI+ + ++TG  + I++D     G V+I    
Sbjct: 548 DVKPHAPKMVTRRIPNEFIGALIGPGGKVIQEMQKETGTTIVINEDPVTEEGIVEILGVG 607

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657
              I+A    I SI   PE+ K Y+ +V+K++DFGA V +  A   + L+H+S+L+ ER 
Sbjct: 608 QEGIDAVLAKIDSILFKPELGKSYEVKVIKMLDFGAVVEYAEAPGNEVLLHVSELAWERT 667

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
              SDVV  GD   VK    D +  K K+S K +
Sbjct: 668 ENVSDVVNMGDVFEVKYFGVDPKTRKEKVSRKAL 701


>gi|163754268|ref|ZP_02161391.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
 gi|161326482|gb|EDP97808.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
          Length = 746

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/696 (40%), Positives = 432/696 (62%), Gaps = 25/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +    D  DF PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD E  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDPEVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  ING++++NP R   ++  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRINGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIK 249
            +++SE+ + +AI F H   K    A  +LA+   K+    +++++   + +EE++Q I 
Sbjct: 194 MDEISEEEMTEAIKFAHEAIKVQCAAQLRLAEAIGKK----ETREYEPERADEELAQKIH 249

Query: 250 EDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +      +   K    K+       ++K+++++ F+ E      G I   +   +   VR
Sbjct: 250 DMAYDKVYAVAKAGSSKKERGMAFSEIKEEIIASFTEEEIEDFGGLISKYYSKAEKAAVR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + L++ +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +   +D
Sbjct: 310 DLTLNEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P+    PYT+R
Sbjct: 370 MPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVPEDC--PYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482
           +VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ D D   + +LSDI GD
Sbjct: 428 VVSEVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDADSGKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL +++  ++  
Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTIAAP 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597
              +    P++    IP D I  +IG GGKVI+ + ++T   + I++D     G V+I  
Sbjct: 548 NENVKAHAPKMITRTIPGDYIGALIGPGGKVIQELQKETNTTIVINEDPVTEEGIVEILG 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655
           +    I+A    I SIT  PE   IY+ +VVK++DFGA V +  A   + L+HIS+L+ E
Sbjct: 608 TDQEGIDAVLAKIDSITFKPEKGSIYEVKVVKMLDFGAVVEYTEAPGNEVLLHISELAWE 667

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           R    SD+VK GD + VK    D +  K K+S K +
Sbjct: 668 RTNNVSDIVKMGDILDVKYFGIDPKTRKEKVSRKAI 703


>gi|302528525|ref|ZP_07280867.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
 gi|302437420|gb|EFL09236.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
          Length = 749

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 287/719 (39%), Positives = 431/719 (59%), Gaps = 36/719 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   E T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 21  FGTRTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKEHFDFFPLTVDVEERMYA 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL +R+IDR +RP F+   +NE QV+I V   + +    V+
Sbjct: 81  AGRIPGAFFRREGRPSTDAILTARLIDRPLRPSFADGLRNEIQVVITVQSLNPDDPYDVL 140

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  ++GLPF GPV G +V  I  Q+V  P   + ++ + ++ V+G       A
Sbjct: 141 AINAASASTQIAGLPFSGPVGGVRVALIEDQWVAFPTWPQLEKATFNMVVAGRIVGDDVA 200

Query: 185 VLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKLAKMCAKE---- 228
           ++MVE E  + + D++          A+  G    KP I    EA  +LA   AK     
Sbjct: 201 IMMVEAEGTEHTLDLIAAGGKAPDEAAVAEGLEAAKPFIRVLCEAQQRLAADAAKPTGEF 260

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+    +    + E ++ +  ++L  +  I  K  R    D++K  ++           E
Sbjct: 261 PVYPAYQ--PDIYEAVAAIASDELAKALQIAGKQERDAATDEVKATVLEKLGLGEGEAFE 318

Query: 289 G---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
           G   E+   F+ +  K++R  +L +K+RMDGR    +R +SA+V ++ R HGS+LF RG+
Sbjct: 319 GRDKEVGGAFKALTKKIMRNRVLTEKIRMDGRGLTDIRQLSAEVAVVPRAHGSALFERGE 378

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + + TL     EQ +DSLS      ++ HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 379 TQILGITTLNMLRMEQQIDSLSPETTKRYLHHYNFPPFSTGETGRVGSPKRREIGHGMLA 438

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP+  +FPY +R VSE   S+GS+SM +VC S++ L++AGVP+  PVAGIAMG
Sbjct: 439 ERALVPVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMGLLNAGVPLKAPVAGIAMG 498

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    ++ L+DI G ED LG MDFKVAGT   ITA+Q+D K+ GI   ++  AL
Sbjct: 499 LVSDEVDGETRYVALTDILGAEDALGDMDFKVAGTKDIITALQLDTKLDGIPSEVLAAAL 558

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  RL IL+ +++ + +   ++  + PRV  + IP D+I  VIG  GK+I  I E+T
Sbjct: 559 KQAKDARLTILDVIAEAI-DGPDEMSPYAPRVTSVKIPVDKIGEVIGPKGKMINSITEET 617

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ + ++     EAA   I +I +  +P+V + + G VVK   FGAFV  
Sbjct: 618 GADISIEDDGTIYVGAADGPSAEAAIGKINAIANPQLPKVGERFLGTVVKTAAFGAFVSL 677

Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              +DGLVHIS+L   +R+AK  DVV  GD + V++ D D+RGKI L + V +++  KP
Sbjct: 678 LPGKDGLVHISKLGNGKRIAKVEDVVNVGDKIRVEIADIDNRGKISL-IVVKEEDAAKP 735


>gi|289643638|ref|ZP_06475751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia symbiont of Datisca
           glomerata]
 gi|289506529|gb|EFD27515.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia symbiont of Datisca
           glomerata]
          Length = 733

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 287/718 (39%), Positives = 432/718 (60%), Gaps = 42/718 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++ ETGR+ARQ+ G+ +A  G+T+VL+     +  K+  DFFPLTV+ +ER YA G+I
Sbjct: 23  RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 82

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  V+  D ++   VV++ A
Sbjct: 83  PGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQIVATVLALDPDTLYDVVAINA 142

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186
           ASA+  L+GLPF GP+   +V Y++G ++  P   E ++ + D+ V+G      +  A++
Sbjct: 143 ASASTTLAGLPFSGPIGATRVGYVDGTWIAFPTHAELERATFDMVVAGRVLDDGSDVAIM 202

Query: 187 MVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISK----LAKMCAKE----PI 230
           MVE EA   +  ++         D +  G    KP I  + +    LA+  AK     P+
Sbjct: 203 MVEAEATAHTIPLLAAGSPAPTEDVVAAGLEAAKPAIRELCRAQRGLAERAAKPTRDFPL 262

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSSW 286
            ID  D   + E +S  + ++L  +  I  K  R  ++D ++    +K+V  F       
Sbjct: 263 FIDYHD--DVLEALSIAVGDELAAALRIAGKQEREAELDRVRLLAAEKVVGQFEG----- 315

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +  K+VR  ++   VR+DGR    +R+++A+V  + R HGS+LF RG+T
Sbjct: 316 REKEIGAAYRALTKKLVRQRIVADGVRIDGRGVTEIRELAAEVDFIPRVHGSALFERGET 375

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 376 QILGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 435

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGIAMGL
Sbjct: 436 RALLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGL 495

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +++GD F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  ALQQA+ 
Sbjct: 496 IREGDQFVTLTDILGAEDAYGDMDFKVAGTREFVTALQLDTKLDGIPATVLAGALQQARA 555

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RL IL+ M++ + +   ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ 
Sbjct: 556 ARLAILDVMAEAI-DGPDEMSTHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEIT 614

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++DDGT+ I +      E+AR  I +I +  +PEV + Y G +VK+  FGAFV     +D
Sbjct: 615 VEDDGTIYIGAQDGVSAESARSAINAIANPQLPEVGERYLGTIVKITIFGAFVSLTPGKD 674

Query: 645 GLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GL+HIS+L      +RV K  +VV+ G  + V++ D D RGKI LS  VV+   G P+
Sbjct: 675 GLLHISKLKQLSGGKRVEKVEEVVQVGQKLQVEITDIDSRGKISLS-PVVEDADGVPV 731


>gi|297202779|ref|ZP_06920176.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
           ATCC 29083]
 gi|197716767|gb|EDY60801.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
           ATCC 29083]
          Length = 740

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 287/708 (40%), Positives = 421/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELEDAVFDMVVAGRALEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ +        SK AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLASKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELASALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  ++VR  ++ +K R+DGR    +R ++A+V  + R HGS++F RG+TQ
Sbjct: 314 EKEISAAYRSLTKQLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               DG+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I +      EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAVDGPSAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
 gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
          Length = 793

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 279/692 (40%), Positives = 433/692 (62%), Gaps = 20/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++ARQ+DGAV    G  ++LATVV  ++ K GQ FFPLTV+YQE+  + G+
Sbjct: 15  GRIVTIETGKLARQADGAVTVRLGNCILLATVVAAKTPKPGQSFFPLTVDYQEKFASAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + +RE + ++ E+LISR+IDR++RPLF   Y  E QV+++++  D E  P  ++ +
Sbjct: 75  IPGSFFKREGKLSDYEVLISRLIDRALRPLFPDDYFCEVQVLVSLISSDPEVMPDALACL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +P +  +   +V  I+GQ V+NP R   ++  +D  +  T+  ++MVE E
Sbjct: 135 AASAALAVSDVPIQEIISEVRVSRIDGQLVINPNRTPLEKADMDFIIGATEKNIMMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMS 245
           + + SE+ ++ AI   H   +  ++A  +L +       V   ++F K      L+ +++
Sbjct: 195 SKECSEEDIIKAIEVAHEAIRVQVKAQEELREKAG----VSGKREFEKPYANEELKAKIA 250

Query: 246 QMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
              +E  L V+     K+ R    D + +++V +   E    +   +   F  ++ +V+R
Sbjct: 251 AFAQERILAVAKSASAKHDRADAFDKISEELVEHL-GELPEEDAPLVGKYFHSLEKEVIR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD+ VR+DGR  + VR ++ +  +L   HGS+LF RG+TQ++  VTLGT +DE   +
Sbjct: 310 NMILDQSVRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTPDDELLSE 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S + ++   F++HYNF P +TGEV  M  P RRE+GHG LA R++  ++P + ++ YT+R
Sbjct: 370 SAATSKYTKFILHYNFPPFSTGEVKPMRGPGRREVGHGNLAMRSLKQMMPGS-EYAYTVR 428

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482
           +VS+I ES+GSSSMATVC  SLALMDAGVP+ K V+G+AMGL+    D  + +L+DI GD
Sbjct: 429 VVSDILESNGSSSMATVCAGSLALMDAGVPLPKHVSGVAMGLISRASDGKWAVLTDILGD 488

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GI  +QMD+K+ G+S ++M  AL+QA+ GRLHI++ M   +  +
Sbjct: 489 EDHLGDMDFKVTGTRDGICGIQMDIKVDGLSMDVMRKALEQARSGRLHIIDAMYTAMPAA 548

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIASSS 599
           R +     PR+E + I  + I  VIG GGKVI+ I  +TG  +NI+   + G V I S+ 
Sbjct: 549 RPEPKPHAPRMEKLIIDREFIGAVIGPGGKVIQEIQRETGTNINIEEVGETGEVSIFSAQ 608

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              +  A E I+ I  VPE+ + Y+  V  VM +GAFV F   + GL+HIS++S +R+  
Sbjct: 609 KEGLMKALEWIKGIVAVPEIGETYESTVKSVMPYGAFVEFLPGKQGLLHISEVSWKRLET 668

Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
              V+ EG+ V VKL+  D + GK KLS +V+
Sbjct: 669 MEGVLTEGEKVKVKLVGTDPKTGKFKLSRRVL 700


>gi|303238032|ref|ZP_07324575.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
           FB035-09AN]
 gi|302481822|gb|EFL44874.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
           FB035-09AN]
          Length = 739

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/699 (39%), Positives = 423/699 (60%), Gaps = 25/699 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 4   GRNITIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 64  FPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVFVSVMLLSADGVDMPDALAGF 123

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +P E P+   +V  +NG+Y++NP  ++  +  +D+ V  T+D ++MVE E
Sbjct: 124 AASAAMQCSDIPIEHPISEVRVARVNGEYIINPTFEQMKEADMDIMVGATKDNIMMVEGE 183

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  ++DA+   H+  KP+ E   +LAK    +       + +  +EE+ + +K++
Sbjct: 184 MEEVSEQDLIDALKAAHDAIKPMCEIQEELAKELGTDVKREYCDEVN--DEELREQVKKE 241

Query: 252 LRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298
              +C+        +K  R +  + +K   V  + + H+  +E        +I   F D+
Sbjct: 242 TYDACYAQAQSGDDDKKHRAEVYEKIKADFVERYDAAHTDLSEDDLEEKHAQIDRYFADV 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   +R  +LD   RMDGR  + +R I  +V  L   HGS+ F RG+T A+   TLGT+ 
Sbjct: 302 ERDSMRRSVLDTGKRMDGRACDEIRPIWCEVDPLPMPHGSAYFQRGETLALATCTLGTKL 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD++       F++HYNF P  TGE        RREIGHG LA R +  ++P+   
Sbjct: 362 DEKMVDNVLDKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGMIPE--D 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPYT+R+VS++ ES+GSSSMATVC  +LALMDAGVPI KPV+GIAMGL+K+   D + +L
Sbjct: 420 FPYTVRLVSQVLESNGSSSMATVCSGTLALMDAGVPIKKPVSGIAMGLIKNPGEDKYAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QAK+ R  IL++++
Sbjct: 480 SDILGDEDHLGDMDFKTTGTRDGITATQMDIKCDGLSFEILEKALMQAKQAREFILDKIT 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593
           + + E R ++    PR+  M IP + I  +IG GGK+I+ + E TGA + ID+    G +
Sbjct: 540 ETIPEPREEMKPQVPRIVQMEIPKEFIGAIIGPGGKIIQQMQEDTGATITIDEVDGVGKI 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   I++I  VPE+ + Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 600 QVSAPNKTAIDAALGKIKAIVAVPEIGETYEGTVRSIMPYGCFVEIMPGKDGLLHISEID 659

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +R+    +  +KEGD + VKLLD D + GK KLS + +
Sbjct: 660 WKRLETVEEAGIKEGDKIQVKLLDIDPKTGKYKLSRRCL 698


>gi|281423345|ref|ZP_06254258.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
 gi|281402681|gb|EFB33512.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
          Length = 757

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/698 (40%), Positives = 416/698 (59%), Gaps = 24/698 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PFE  +   +V  ING+YV++P   +     +DL V+ T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQQMADADMDLMVAATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  ++ A+       KP+ E   +L+K    +  V    D    +E++ + IK +
Sbjct: 193 MKEVSEQDLIGALKAAAEAIKPMCELQEELSKELGTD--VKREYDHEINDEDLREQIKNE 250

Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEH-------SSWNEGEIVSVFEDIQ 299
           L    +       EK+ R    D +    +  + + H             E    +ED+ 
Sbjct: 251 LYKPVYDINKQALEKHARHDAFDKILADFLEKYDAAHSELSEEDLEEKHAEATRYYEDVM 310

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT+ D
Sbjct: 311 RDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLD 370

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P+   +
Sbjct: 371 EKMVDDVLEKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE--DY 428

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + ILS
Sbjct: 429 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 488

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN M +
Sbjct: 489 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAKAGREHILNCMLE 548

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVK 594
            +SE R +L    PR+E   IP + I  +IG GGK+I+ + E+TGA + ID+    G V 
Sbjct: 549 TISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEETGATITIDETDGKGHVT 608

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++ +   I AA   I++I  VPEV ++Y+G V  +M +G FV     RDGL+HIS++  
Sbjct: 609 VSAPNKDSINAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPGRDGLLHISEIDW 668

Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +R+    +  +KEGD V VKL++ D + GK KLS +V+
Sbjct: 669 KRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVL 706


>gi|281422610|ref|ZP_06253609.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
           18205]
 gi|281403280|gb|EFB33960.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
           18205]
          Length = 772

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/698 (40%), Positives = 418/698 (59%), Gaps = 24/698 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKASDEEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PFE  +   +V  ING+YV+NP   + ++  +D+ V  T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFEYYISEVRVARINGEYVVNPTFQQMEEADMDIMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  ++ A+       KP+ E   +LAK   K   V    D    +EE+ + IK +
Sbjct: 193 MKEVSEQDLIGALKVAAEAIKPMCELQYELAK--EKGTDVKREYDHEINDEELREQIKSE 250

Query: 252 LRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDIQ 299
           L    +       EK+ R    D +    +  + + H+  +E        E    ++D+ 
Sbjct: 251 LYKPAYDINHQALEKHARQDAFDKVLADFLEKYDAAHTDLSEEDLEEKHAEATRYYDDVM 310

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+ +R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT+ D
Sbjct: 311 RDAMRRCILDEGLRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMD 370

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E+ +D +       F++HYNF P +TGE        RREIGHG LA R +   +P    F
Sbjct: 371 EKLIDGVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--TDF 428

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILS 477
           PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + ILS
Sbjct: 429 PYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILS 488

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN M +
Sbjct: 489 DILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEEALMQAKAGREHILNCMME 548

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVK 594
            +SE R ++    PR+    IP + I  VIG GGK+I+ + E TGA + I   D  G V+
Sbjct: 549 TISEPRAEMKPQVPRIVAFDIPKEFIGAVIGPGGKIIQQMQEDTGATITIEETDGQGHVQ 608

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++ +   I+AA   I++I  VPEV ++Y+G V  +M +G FV     +DGL+HIS++  
Sbjct: 609 VSAPNKDSIDAALAKIKAIVAVPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDW 668

Query: 655 ERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +R+    +  +KEGD + VKL++ D + GK KLS +V+
Sbjct: 669 KRLETVEEAGIKEGDKIKVKLMEIDPKTGKYKLSHRVL 706


>gi|305664512|ref|YP_003860799.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
           HTCC2170]
 gi|88708529|gb|EAR00765.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
           HTCC2170]
          Length = 737

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/692 (40%), Positives = 425/692 (61%), Gaps = 19/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +    D  DF PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQAD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD    P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPEAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  +NG++V+NP R   ++  +++ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFVINPTRAQLEESDIEMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE+ + DAI F H   K  I A  +LA+   K+ +     + +++ E++ + I + 
Sbjct: 194 MDEISEEEMADAIKFAHEAIKVQIAAQLRLAEAFGKKEV--REYETAEVNEDLQKRIHDL 251

Query: 252 LRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
               C+        K  R     ++K+++ + F+ E        +   +   + + VR +
Sbjct: 252 AYDKCYAIAKQGTSKVERSNAFAEVKEEVKASFTEEEMEEFGHLVGGYYGKAEKEAVREL 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
            L + +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  D   +D  
Sbjct: 312 TLSEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSRDANKIDMP 371

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S     +F +HYNF P  TGE   +   SRRE+GHG LA+RA+  ++P+    PYT+R+V
Sbjct: 372 SHEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKGMVPEDC--PYTVRVV 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+ ES+GSSSMATVC  ++A+MDAGV +++PV+GIAMGL+ DGD + +LSDI GDEDHL
Sbjct: 430 SEVLESNGSSSMATVCAGTMAMMDAGVQMTRPVSGIAMGLISDGDRYAVLSDILGDEDHL 489

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  ++     +
Sbjct: 490 GDMDFKVTGTSEGITACQMDIKIKGLSYEILVNALKQAREGRLHILGKITDTIATPAQNV 549

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601
            E  P +    IP + I  +IG GGKVI+ + ++T   + I++D     G V+I      
Sbjct: 550 KEHAPTMVTRRIPNEFIGALIGPGGKVIQEMQKETETTIVINEDPVTEEGIVEILGVGSE 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659
            I A    I S+   PEV  +Y+ +V+K++DFGA V +  A   + L+H+S+L+ ER   
Sbjct: 610 GIAAVEAKIDSLMFKPEVGSVYEVKVIKMLDFGAVVEYMEAPGNEVLLHVSELAWERTEN 669

Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
            SDVV  GD   VK    D R  K K+S K +
Sbjct: 670 VSDVVNMGDVFDVKYFGLDKRTRKDKVSRKAL 701


>gi|159036978|ref|YP_001536231.1| polynucleotide phosphorylase/polyadenylase [Salinispora arenicola
           CNS-205]
 gi|187611286|sp|A8M758|PNP_SALAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157915813|gb|ABV97240.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Salinispora arenicola CNS-205]
          Length = 786

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/704 (40%), Positives = 419/704 (59%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     R  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTRVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEQFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D      VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   ++ +I+G +V  P  +E ++ + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELERATFDMVVAGRALPDGDVA 199

Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKE---- 228
           ++MVE EA + +  +V         + +  G    KP I     A S+LA++ AK     
Sbjct: 200 IMMVEAEATEHTVKLVAGGASAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D  D +   + ++ + + D+  +  I  K  R + +D +K +++           E
Sbjct: 260 PVFLDYSDDAY--QAVADLARSDVAEALKIAGKADREEALDRIKARVIEDLGPRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ +    +    VR+ +L ++VR+DGR    +R ++A+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAALRSLTKSEVRSRVLREQVRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 D----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D       ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVEGKTRYVTLTDILGAEDAFGDMDFKVAGTQEFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL  M   + E+   + ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 YEARQTILEVMQAAI-EAPATMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA E + +I +  +P+V   + G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVERVNAIANPTLPKVGDRFLGTVVKTAAFGAFVSLLPG 675

Query: 643 RDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDYLNVGDKVEVEIADIDQRGKIYL 719


>gi|294631766|ref|ZP_06710326.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
 gi|292835099|gb|EFF93448.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
          Length = 740

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/708 (40%), Positives = 423/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  VM  + +    VV
Sbjct: 78  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVCTVMALNPDHLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G   +D   
Sbjct: 138 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ +        +K AK   +
Sbjct: 198 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 258 FPIFLDYQD--DVLEALTAAVRPELAQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  ++VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 315 EKEISAAYRALTKQLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 435 ALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 494

Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 495 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 555 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 614 EITIEDDGTIYIGAADGPSAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721


>gi|120434746|ref|YP_860433.1| polynucleotide phosphorylase/polyadenylase [Gramella forsetii
           KT0803]
 gi|187610271|sp|A0LYC0|PNP_GRAFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117576896|emb|CAL65365.1| polyribonucleotide nucleotidyltransferase [Gramella forsetii
           KT0803]
          Length = 750

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/693 (40%), Positives = 434/693 (62%), Gaps = 19/693 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD   F PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-LPFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD E  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMIQLMSHDDEVMPEAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  +NG++++NP R    +  +++ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249
            +++SE+ +++AI F H   K  IEA  +LA    ++ +    D+ +   L +++  M  
Sbjct: 194 MDEISEEDMVEAIKFAHEAIKVQIEAQHRLADAFGRKEVREYEDAPENEDLVKKVHDMAY 253

Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRTVM 307
           + +  V+     K  R      +K+++ + FS E      G++VS  +   +   VR + 
Sbjct: 254 DKVYAVAKAGSSKKERTDAFASIKEEVKASFSEEELE-EYGDLVSDYYRKAEKAAVRDLT 312

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L++ +R+DGR ++ VRDI  +V  L   HGSS+F RG+TQA+  VTLGT  D   +D  S
Sbjct: 313 LNEGIRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPS 372

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 F +HYNF P  TGE   +   SRRE+GHG LA+RA+  ++P+  + PYT+R+VS
Sbjct: 373 HEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMIPE--ECPYTVRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDEDH 485
           E+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ DGD   + +LSDI GDEDH
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSGKYAVLSDILGDEDH 490

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL +++  +++    
Sbjct: 491 LGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTIAQPNAD 550

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSL 600
           +  + P++    IP + I  +IG GGKVI+ + ++TG  + I++D     G ++I  +  
Sbjct: 551 VKAYAPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIIEILGTEQ 610

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVA 658
             I+     I SIT  PE   +Y+ +V+KV+DFGA V +  A   + L+HIS+L+ ER  
Sbjct: 611 EGIDKVIAKIESITFKPEKGSVYEVKVIKVLDFGAVVEYMDAPGNEVLLHISELAWERTN 670

Query: 659 KTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
             +DV+K GD + VK    D +  K K+S K +
Sbjct: 671 DVNDVLKLGDVLDVKYFGLDPKTRKDKVSRKAL 703


>gi|256379820|ref|YP_003103480.1| polynucleotide phosphorylase/polyadenylase [Actinosynnema mirum DSM
           43827]
 gi|255924123|gb|ACU39634.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinosynnema mirum DSM 43827]
          Length = 747

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/704 (40%), Positives = 419/704 (59%), Gaps = 29/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETG +ARQ+ G+V+A    ET++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGHLARQAAGSVVAYLDDETMLLSATTASKAPKEHFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV+I VM  +      VV
Sbjct: 78  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVITVMSLNPADLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P  ++ +    D+ V+G       A
Sbjct: 138 AINAASASTQLAGLPFSGPIGGVRVALIEGQWVAFPTHEQLENAVFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKMCAKEPIVIDSK- 235
           ++MVE EA +   D++ +         +  G    KP I+ + +     A+       + 
Sbjct: 198 IMMVEAEATEKVIDLIGEGAQAPTEEVVAAGLEASKPFIKVLCEAQAQLAQVAAKATGEF 257

Query: 236 -DFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
             F   + +  + ++     DL  +  I  K  R  +ID++K  ++   +++     E E
Sbjct: 258 PTFPAYQADAFEAVEAAGASDLAQALTIAGKQEREGRIDEVKASVLEKLAAQFEG-REKE 316

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           + + F  +  K+VR  +L  KVR+DGR    +R + A+V ++ RTHGS+LF RG+TQ + 
Sbjct: 317 VGAAFRSLTKKLVRQRILRDKVRIDGRGLTDIRSLGAEVAIIPRTHGSALFERGETQILG 376

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TL     EQ +DSLS      ++ HYNF P +TGE  R+G+P RREIGHG LA RA+ 
Sbjct: 377 VTTLNMLRMEQQIDSLSPETHKRYLHHYNFPPYSTGETGRVGSPKRREIGHGALAERALM 436

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP+  +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PV+GIAMGLV D 
Sbjct: 437 PVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVSGIAMGLVSDE 496

Query: 471 DD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
            D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL QA+ 
Sbjct: 497 VDGKTEYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPSEVLASALSQARD 556

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RL IL  M++ +     ++  F PRV  + IP D+I  VIG  GK+I  I EQTGA ++
Sbjct: 557 ARLAILEVMAEAIDVPD-EMSPFAPRVTSVKIPTDKIGEVIGPKGKMINSITEQTGADIS 615

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           I+DDGT+ + ++     EAA  +I +I +  +P+V + + G VVK   FGAFV     +D
Sbjct: 616 IEDDGTIYVGAADGPSAEAAIGLINAIANPQLPKVGERFLGTVVKTAAFGAFVSLLPGKD 675

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GL+HIS+L   +R+ K  DVVK GD + V++ D D RGKI L +
Sbjct: 676 GLIHISKLGNGKRIGKVEDVVKVGDKLRVEIADIDQRGKISLVL 719


>gi|261338333|ref|ZP_05966217.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
           DSM 20093]
 gi|270277006|gb|EFA22860.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
           DSM 20093]
          Length = 895

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 299/724 (41%), Positives = 439/724 (60%), Gaps = 42/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + T++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGTRTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + +  VV
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPDDAYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AASA+ ++SGLPF GPV G ++  I+GQ+V  PR  E ++   ++ V+G        
Sbjct: 138 ALNAASASTLISGLPFGGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVDNGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I    EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWKLIYDEGHMKPDEEVVAGGLEAAKPFIKVICEAQDELKKLAAKE-- 255

Query: 231 VIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             + + F +  +++   I E    DL  +  I EK  R ++I ++K+K+    S E +  
Sbjct: 256 TREFQLFPEYTDDLYNRIDEIAHADLDEALSIAEKLPRQERIHEIKEKVREALSLEFTDM 315

Query: 287 NEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +E E    + + F+++Q ++VR  +L +  R+DGR    +R +SA+VG++ R HGS+LF 
Sbjct: 316 DEAEKEKEVGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVGIVPRVHGSALFQ 375

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +D+LSG     +M +Y   P +TGE  R+G+P RREIGHG
Sbjct: 376 RGETQILGVTTLNMLKMEQQIDALSGPTSKRYMHNYEMPPYSTGETGRVGSPKRREIGHG 435

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+DAGVP+  PVAGI
Sbjct: 436 ALAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLDAGVPLKAPVAGI 495

Query: 463 AMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++ 
Sbjct: 496 AMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADVLA 555

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL+QA   R  IL  +++ + +   ++ E  PR+    +P D+I  +IG  GK+I  I 
Sbjct: 556 GALKQAHEARTTILEVINECI-DGPAEMNETAPRIITTVVPVDKIGEIIGPKGKMINQIQ 614

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E TGA++ I+DDGTV I+S   A  EAA+++I  I +  VP+  + Y G+VVK   FGAF
Sbjct: 615 EDTGAEIAIEDDGTVFISSEGGAAAEAAKKIIDEIANPHVPQAGETYTGKVVKTTSFGAF 674

Query: 637 VHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVD 691
           V+     DGL+HISQ+    + ER+    DV+KEGD V V + + DDRGKI L++    D
Sbjct: 675 VNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDEVEVVVQNVDDRGKISLAIPGFED 734

Query: 692 QNTG 695
           Q +G
Sbjct: 735 QESG 738


>gi|183981938|ref|YP_001850229.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium marinum M]
 gi|226702666|sp|B2HKV3|PNP_MYCMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183175264|gb|ACC40374.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium marinum M]
          Length = 762

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 287/719 (39%), Positives = 423/719 (58%), Gaps = 46/719 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+A    E ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGSVVAYLDDENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      VV
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AASA+  L+GLPF GPV G +V  I+GQ+V  P +++ ++   D+ V+G        
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 201

Query: 181 -TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI-----------S 219
            T D A++MVE EA     ++V           +  G    KP I A+            
Sbjct: 202 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 261

Query: 220 KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
             AK  A+ P+  +  D   +   +S +  + L  +  I  K  R ++ +++K +++   
Sbjct: 262 ATAKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 319

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  +    E EI + F  +  K+VR  ++    R+DGR    +R +SA+V L+ R HGS+
Sbjct: 320 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGITDIRALSAEVALVPRAHGSA 378

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 379 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 438

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PV
Sbjct: 439 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 498

Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           AGIAMGLV D  +        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 499 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 558

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  RL IL  M++ + ++  ++  + PRV  + +P D+I  VIG  G
Sbjct: 559 IPSQVLAGALAQAKDARLTILEVMAEAI-DTPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 617

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           KVI  I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK
Sbjct: 618 KVINSITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 677

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L +
Sbjct: 678 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 736


>gi|297562516|ref|YP_003681490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846964|gb|ADH68984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 770

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/705 (40%), Positives = 421/705 (59%), Gaps = 35/705 (4%)

Query: 11  WAGRPLKLETGRIARQSDG-AVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G A +    ETVVL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 16  FGTRTIRFETGRLARQAAGSATVYLDDETVVLSATTASKRPKENLDFFPLTVDVEERMYA 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  V+    E    VV
Sbjct: 76  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETVLALHPEHLYDVV 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GP+ G +V  I+GQ+V  P   E +  + D+ V+G        
Sbjct: 136 AINAASMSTQIAGLPFSGPIGGVRVALIDGQWVGFPTHAELENATFDMVVAGRVLADGDV 195

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNE---------CKPVIEAISKLAKMCAKE------ 228
           A++MVE E+   +  +V +  + G NE          KP I+ + K  +  A +      
Sbjct: 196 AIMMVEAESTVRTLKLVAEGAV-GPNEQTVAEGLEAAKPFIKVLCKAQQAVADQTSREQG 254

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             PI +D +D   +  E +  ++E+L  +  I +K  R  ++D +K       + E    
Sbjct: 255 EFPIFLDYEDDVYVAVEGA--VREELSKALTIADKQDREAELDRVKASAAEKLA-EDFEG 311

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + F  +  +++R  +L   +R+DGR  + +R +SA+VG+L R HGS+LF RG+T
Sbjct: 312 REKEIGAAFRSLSKQLMRERVLRDGIRIDGRGPKDIRQLSAEVGVLPRVHGSALFERGET 371

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 372 QIMGVTTLNMLRMEQTVDTLNPDKTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 431

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++LM AGVP+ + V+GIAMGL
Sbjct: 432 RALLPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLMAAGVPLKEMVSGIAMGL 491

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           + +GD+F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI    + +ALQQA+ 
Sbjct: 492 ISEGDEFVTLTDILGAEDAFGDMDFKVAGTRELITALQLDTKLDGIPAEQLALALQQARG 551

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RL IL+ M + + E   ++    PR+  + +P ++I  VIG  GK+I  I + TGA++ 
Sbjct: 552 ARLAILDVMQEAI-ERPAEMSPNAPRILTVKVPVEKIGEVIGPKGKMINSIQDDTGAEIT 610

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           I+DDGT+ I ++     EAAR+ I  I +  +PEV   Y G VVK   FGAFV     +D
Sbjct: 611 IEDDGTIYIGATDGPSAEAARDTINQIANPTMPEVGDRYLGTVVKTTTFGAFVSLLPGKD 670

Query: 645 GLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GL+HISQ+      +R+    DV+  G+ + V++ + DDRGK+ L
Sbjct: 671 GLLHISQIRKLHGGKRIENLDDVISIGEKIQVEIREIDDRGKLSL 715


>gi|302554539|ref|ZP_07306881.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472157|gb|EFL35250.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 738

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/708 (40%), Positives = 419/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELEDAVFDMVVAGRTLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ +        SK AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQADLASKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELASALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS++F RG+TQ
Sbjct: 314 EKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I +      EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAVDGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVVGVGAKVQVEIAEIDSRGKLSL 720


>gi|145224603|ref|YP_001135281.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium gilvum
           PYR-GCK]
 gi|315444934|ref|YP_004077813.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Mycobacterium sp. Spyr1]
 gi|189037310|sp|A4TCH6|PNP_MYCGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145217089|gb|ABP46493.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium gilvum
           PYR-GCK]
 gi|315263237|gb|ADT99978.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Mycobacterium sp. Spyr1]
          Length = 756

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/715 (39%), Positives = 426/715 (59%), Gaps = 42/715 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ GAV+A    ET++L+     +  K+  DFFPLT++ +ER YA
Sbjct: 22  FGTRTIRFETGRLARQAAGAVVAYLDDETMLLSATTASKQPKEHFDFFPLTIDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFISGLRNEIQVVVTVLSLDPKDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------T 181
           ++ AASA+  +SG+PF GPV G +V  I+GQ+V  P +++ ++   D+ V+G        
Sbjct: 142 AINAASASTQISGIPFNGPVGGVRVALIDGQWVAFPTVEQLEKAVFDMVVAGRKVGDAGN 201

Query: 182 QD-AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAI--------SKLAKM 224
           +D A++MVE EA     ++V        +A++  G    KP I A+            K 
Sbjct: 202 EDVAIMMVEAEATDKVIELVAGGAGAPTEAVVAEGLEAAKPFIAALCDAQAALAGAAGKE 261

Query: 225 CAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
            A+ P+  D  +   +   ++ +  + L  +  I  K  R  + +++K ++V   + +++
Sbjct: 262 TAEYPVFPDYAE--DVYYSVASVATDALSEALTIAGKEARDDRTNEIKAEVVERLAEQYA 319

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E EI + +  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 320 G-REKEIGAAYRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAVIPRAHGSALFERG 378

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 379 ETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL 438

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAM
Sbjct: 439 AERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAM 498

Query: 465 GLVKDGDD---------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           GLV D  +         F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   
Sbjct: 499 GLVSDDVEVEGGGVERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQ 558

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QAK  R+ IL  M++ + E   ++  + PR+  + +P D+I  VIG  GK+I 
Sbjct: 559 VLAGALAQAKDARITILEVMAEAIDEPD-EMSPYAPRITTIKVPVDKIGEVIGPKGKMIN 617

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E+TGA ++I+DDGTV + +S+    +AA + I +I +  +P+V + + G VVK  DF
Sbjct: 618 SITEETGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKVGERFLGTVVKTTDF 677

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GAFV     RDGLVHIS+L   +R+ K  DV K GD + V++ D D+RGKI L +
Sbjct: 678 GAFVSLLPGRDGLVHISKLGRGKRINKVEDVAKVGDKLRVEIADIDNRGKISLVL 732


>gi|313887414|ref|ZP_07821103.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299600|ref|YP_004441521.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923056|gb|EFR33876.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176663|gb|AEE12353.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 736

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 292/691 (42%), Positives = 434/691 (62%), Gaps = 17/691 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV  T G TV+LA V   +  K   DF PL V Y+E+  AVG+
Sbjct: 14  GRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKEAKPDVDFMPLQVEYKEKYSAVGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE R ++ EIL  R++DR++RPLF   Y  E  V I +   D    P  ++ +
Sbjct: 74  FPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFSSDGVDMPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  I+G++V+NP  ++ ++  +DL V+ T D ++MVE E
Sbjct: 134 AASAALAVSDIPFGGPISEVRVARIDGEFVINPTFEQLERADIDLMVAATLDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
             ++ E+ +L+AI   H     +C+  +E    + KM  +E    + +D  +L E M + 
Sbjct: 194 MEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMTKRE-YPAEEQD-EELRERMQRE 251

Query: 248 IKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + + + +V+    +K+ R    + + ++  + F+ E        I   + D++   +R +
Sbjct: 252 LYDKIYKVATAGTDKHARGDAFEAIVEEFKAQFTEEELEAKGMIIDRYYHDMEKAAMRRM 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+ VD +
Sbjct: 312 ILDEGKRLDGRRTNEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDV 371

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
               +  F++HYNF P +TGE       SRREIGHG LA RA+  ++P+   +PY +R++
Sbjct: 372 LNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYVIRVM 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484
           S+I ES+GSSSMATVC  +LAL DAGV + KPV+GIAMGL+ +  G ++ ILSDI GDED
Sbjct: 430 SDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNYAILSDILGDED 489

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GRLHIL+++ +   E+R 
Sbjct: 490 HLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILDKIEEAQPEARP 549

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSLA 601
            +    PR+E + I  + I  VIG GGK+I+GI EQ+GA VNI   D+ G V+I+SS+  
Sbjct: 550 DMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEQSGATVNIEEVDNYGIVEISSSNKE 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++AA  M+R I   PEV ++YKG V  VM +G FV F   +DGL+HIS++  +R A   
Sbjct: 610 SLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHISEIDWKRFATIE 669

Query: 662 DV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           D  +KEGDT+ VKL++ D + GK  LS K +
Sbjct: 670 DTGLKEGDTIDVKLIEIDPKTGKFSLSHKAL 700


>gi|72161188|ref|YP_288845.1| polynucleotide phosphorylase/polyadenylase [Thermobifida fusca YX]
 gi|123629954|sp|Q47RU5|PNP_THEFY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71914920|gb|AAZ54822.1| polyribonucleotide nucleotidyltransferase [Thermobifida fusca YX]
          Length = 767

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 280/707 (39%), Positives = 422/707 (59%), Gaps = 39/707 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+  A    ET+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 16  FGTRTIRFETGRLARQATGSATAYLDDETMVLSATTVSKRPKEALDFFPLTVDVEERMYA 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  V+    +    V+
Sbjct: 76  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFQKGLRNEIQIVATVLALHPDHLYDVI 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  + GQ+V  P   E    + D+ V+G        
Sbjct: 136 AINAASMSTQLAGLPFSGPIGGVRVALVEGQWVAFPTHSELANATFDMVVAGRVLDNGDV 195

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNE---------CKPVIEAISKLAKMCAKE------ 228
           A++MVE E+   +  +V +  I G NE          KP I+ + +  +  A+       
Sbjct: 196 AIMMVEAESTPHTLRLVAEGAI-GPNEQTVAEGLEAAKPFIKVLCRAQQTVAEAAGKPPG 254

Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
             PI ID +D  ++ +EE     I ++L  +  I +K  R  ++D +K  +V+   +E  
Sbjct: 255 EYPIFIDYQDDAYAAVEE----AIHDELAAALTIADKQEREAELDRVKA-LVAEKLAEDF 309

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + F  +  K+VR  ++   VR+DGR  + +R ++A+V ++ R HGS+LF RG
Sbjct: 310 EGREKELAAAFRALTRKLVRERIVKDGVRIDGRGVKDIRSLTAEVNVIPRVHGSALFERG 369

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + + TL     EQ +D+L+  +   +M +YNF P +TGE  R+GAP RREIGHG L
Sbjct: 370 ETQILGITTLNMLRMEQTIDTLNPERTKRYMHNYNFPPYSTGETGRVGAPKRREIGHGAL 429

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++LM AGVP+   VAGIAM
Sbjct: 430 AERALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLMAAGVPLKDMVAGIAM 489

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GL+ +   ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  ALQQA
Sbjct: 490 GLIYEDGKYVTLTDILGAEDAYGDMDFKVAGTRDLITALQLDTKLDGIPAEVLASALQQA 549

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +  RL IL+ MS+ ++    ++    PR+  + +P D+I  VIG  GK+I  I ++TGA+
Sbjct: 550 RGARLAILDVMSEAINRP-AEISPHAPRILTVKVPIDKIGEVIGPKGKMINSIQDETGAE 608

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           + I+DDGT+ I ++     EAAR+ I SI +  +PEV + Y G VVK   FGAFV     
Sbjct: 609 ITIEDDGTIYIGATDGPSAEAARDAINSIANPTMPEVGERYLGTVVKTTAFGAFVSLLPG 668

Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HISQ+      +R+    DV+  G+ + V++ D D+RGK+ L
Sbjct: 669 KDGLLHISQIRKMHGGQRIENVEDVISIGEKIHVEVRDIDERGKLSL 715


>gi|324998720|ref|ZP_08119832.1| polynucleotide phosphorylase/polyadenylase [Pseudonocardia sp. P1]
          Length = 759

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 287/714 (40%), Positives = 422/714 (59%), Gaps = 47/714 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ E GR+ARQ+ G+V+A    ET++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 22  YGTRTVRFEAGRLARQAAGSVVAYLDDETMLLSATTASKRPKDQFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP  + IL  R+IDR +RP F    +NE QV++ VM  D +    VV
Sbjct: 82  AGRIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDPYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT- 181
           ++ AASA+  L+GLPF GPV G +V  I      + Q+V  P  D+ ++ + D+ V+G  
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIANETGTDTQWVAFPTHDQLERAAFDMVVAGRV 201

Query: 182 ---QDAVLMVELEA------------NQLSEDVVLDAIIFGHNECKPVIEAI----SKLA 222
                A++MVE EA            N  +EDVV D    G    KP I ++     +LA
Sbjct: 202 VGDDVAIMMVEAEATEKTIELVDGGANAPTEDVVAD----GLEAAKPFIRSLCVAQQQLA 257

Query: 223 KMCAKEPIVIDSKDFSKLE----EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
            + AK     D   F   +    E +++ ++++L  +  I  K  R  + D++K  ++  
Sbjct: 258 DVAAKP--TADYPVFPAYQPDALEAVTEAVEQELAQALTIAGKQERETRTDEIKASVLEK 315

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
              E  +  E E+ + F  +  K++R  +L  +VR+DGR    +R +SA+V ++ R HGS
Sbjct: 316 LG-ERFTGRESELGNAFRALNKKLIRRRILTDQVRIDGRGLTDIRPLSAEVEVIPRAHGS 374

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           +LF RG+TQ + V TL     EQ +DSL       ++ HYNF P +TGE  R+G+P RRE
Sbjct: 375 ALFERGETQILGVTTLNMLRMEQTIDSLGPETSKRYLHHYNFPPFSTGETGRVGSPKRRE 434

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           IGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  P
Sbjct: 435 IGHGALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAP 494

Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           VAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 495 VAGIAMGLVSDEVDGQTRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 554

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL QAK  RL IL  + + + +   ++ ++ PRV  + +P D+I  VIG  GK+I
Sbjct: 555 EVLAAALSQAKDARLTILEVIGEAI-DGPDEMSKYAPRVTAVKVPVDKIGEVIGPKGKMI 613

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA ++I+DDGT+ + ++     E A  MI +I +  +P+V + + G VVK   
Sbjct: 614 NSITEKTGADISIEDDGTIYVGANDGPSAEEAIGMINAIANPQLPKVGERFLGTVVKAAA 673

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FGAFV     +DGL+HIS+L   +R+ K  DV K GD + V++ D D+RGKI L
Sbjct: 674 FGAFVSLVPGKDGLIHISKLGNGKRIGKVEDVCKVGDKIRVEVTDIDNRGKISL 727


>gi|307564828|ref|ZP_07627356.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
           21A-A]
 gi|307346550|gb|EFN91859.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
           21A-A]
          Length = 751

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/711 (39%), Positives = 426/711 (59%), Gaps = 26/711 (3%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  I+ A GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTIQLADGRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V I ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVYVQIMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P  ++  AASAAL  S +P E P+   +V  I G+Y++NP  D+  +  +D+ V 
Sbjct: 121 DGVDQPDALAGFAASAALAASTIPIEYPISEVRVARIKGEYIINPTFDQMKEADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E +++SE  ++ A+   H   KP+ E   +L+K C  +       + + 
Sbjct: 181 ATKDNIMMVEGEMDEVSEQELIGALKAAHEAIKPMCELQEELSKECGTDVKREYCDEVN- 239

Query: 240 LEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            ++E+ + ++++   +C+        +K+ R +    +K   +  + + H      E+  
Sbjct: 240 -DDELREQVRKETYNACYAQAQSGDDDKHHREEVYSQIKADFIEKYDAAHEDLTADELAE 298

Query: 294 VFE-------DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
             E       D++   +R  +LD   RMDGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHEMIERYYADVERDTMRRSVLDTGKRMDGRATDEIRHIWCEVDALPMPHGSAIFQRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            ++   TLGT+ DE+ VD++       F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 MSLSTCTLGTKMDEKMVDNVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+   +P    FPYT+R+VS+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL
Sbjct: 419 RALKNQIP--TDFPYTVRLVSQILESNGSSSMATVCAGTLALFDAGVPMKKPVSGIAMGL 476

Query: 467 VKDG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   D + ILSDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEDKYAILSDILGDEDHLGDMDFKTTGTRDGITATQMDIKCDGLSYEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR +IL +M + +   R ++    PR+E + IP + I  +IG GGK+I+ + E TGA 
Sbjct: 537 KAGREYILGKMMETMPAPRSEMKPQVPRIEQLFIPKEFIGAIIGPGGKIIQQMQEDTGAT 596

Query: 585 VN---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           +    ID+ G + I++ +   I+AA   I+SI  VPE+ ++Y+G V  +M +G FV    
Sbjct: 597 ITIEEIDNQGKISISAPNKESIDAALGKIKSIVAVPEIGEVYEGIVRSIMPYGCFVEIMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +DGL+HIS++  +R+    +  +KEGD + VKLL+ D + GK KLS +V+
Sbjct: 657 GKDGLLHISEIDWKRLETVEEAGIKEGDKIKVKLLEIDQKTGKYKLSHRVL 707


>gi|294675265|ref|YP_003575881.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
           23]
 gi|294472822|gb|ADE82211.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
           23]
          Length = 792

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 282/700 (40%), Positives = 428/700 (61%), Gaps = 28/700 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V+     TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTITIETGKVAKQTDGSVVLRMNNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE + ++NEIL SR++DR +RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKASDNEILTSRLVDRVLRPLFPSNYHAEVFVNVMLLSADGIDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL  S +PFE P+   +V  +NG+YV++P  ++     +D+ V  + + ++MVE E
Sbjct: 133 AASAALACSDIPFECPISEVRVARVNGEYVIDPTFEQMKNADMDIMVGASAENIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
             ++SE  ++ A+       KP+ E  ++L+K   K+  V    D    +EE+ + + ++
Sbjct: 193 MKEVSEQDMIGALKAAMAAIKPMCELQAELSKELGKD--VKREYDHEVNDEELRERMSKE 250

Query: 252 LRVSCFIPEKYVRCKQ--IDDLKKKMVSY---FSSEHSSWNEGEIVS-------VFEDIQ 299
           L    +   K    KQ   D  +K +  +   +++EH+   E E+          + D++
Sbjct: 251 LYQPAYDVTKQALPKQDRADAFEKILTDFKEKYAAEHADLTEDELEEKYAMMERYYHDVE 310

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD+ +R+DGR ++ +R I  +V  L   HGSS+F RG+TQ++   TLGT+ D
Sbjct: 311 RDAMRRCILDEGIRLDGRKTDEIRPIWCEVSPLPMPHGSSIFTRGETQSLSTCTLGTKLD 370

Query: 360 EQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           E+ VD +   G QR  F++HYNF P  TGE        RREIGHG LA R +   +P+  
Sbjct: 371 EKMVDDVLEHGYQR--FLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIPE-- 426

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFII 475
            FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +
Sbjct: 427 DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAV 486

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S +I+  AL QAK GR HIL  +
Sbjct: 487 LSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFDILEKALMQAKAGREHILKCL 546

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGT 592
           +  ++E R ++    PR+  M IP + I  VIG GGK+I+ + E TGA + ID+    G 
Sbjct: 547 TDTIAEPRAEMKPQVPRIVQMEIPKEFIGAVIGPGGKIIQQMQEDTGATITIDEVDGVGK 606

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V++++ +   I+AA   I++I  +PEV ++Y G V  +M +G FV     +DGL+HIS++
Sbjct: 607 VQVSAPNKESIDAAIGKIKAIVAIPEVGEVYDGVVRSIMPYGCFVEIMPGKDGLLHISEI 666

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             +R+    +  +KEGD + VKLL+ D + GK KLS +V+
Sbjct: 667 DWKRLETVEEAGIKEGDHIQVKLLEIDPKTGKYKLSHRVL 706


>gi|302206397|gb|ADL10739.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330953|gb|ADL21147.1| Polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 767

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 434/723 (60%), Gaps = 48/723 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE--TVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++A+Q+DG+V  TY +  T++LAT    +  ++G DFFPLTV+ +ER 
Sbjct: 42  DFGTRTIRFETGQLAKQADGSV-TTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERM 100

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    
Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYD 160

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180
           VV++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ + +L +L V+G
Sbjct: 161 VVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAG 220

Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK 220
                       +D A++MVE  A +   + + D         +  G    KP IE + +
Sbjct: 221 RLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCR 280

Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
               LA+  AK+    P+     D  +  +E+++S+ +++ L +           + ++ 
Sbjct: 281 AQAGLAEHAAKDAQEFPLFPPYSDVIYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYMES 340

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           ++ ++++ F SE  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V 
Sbjct: 341 IEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEVE 400

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGS+LF RG+TQ + V TL   + EQ +DSLS T    ++ HYNF P +TGE  R
Sbjct: 401 LIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETGR 460

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L +
Sbjct: 461 VGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYN 520

Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D
Sbjct: 521 AGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLD 580

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL QA   R  IL  M++V+ ES  ++ ++ PR+  + +P  +I  V
Sbjct: 581 TKLDGIPSEVLASALAQAYEAREAILETMAEVI-ESPDEMSKYAPRITTVTVPVSKIGEV 639

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624
           IG  GK I  I E+TGA ++I++DGTV ++++S    EAA E I +I +  +P+V + + 
Sbjct: 640 IGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAEAAIEKINAIANPQLPKVGERFL 699

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G +VK   FGAFV     RDGL+HIS+L   +R+ K  DVV  GD V V++LD D+RGKI
Sbjct: 700 GTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGKI 759

Query: 684 KLS 686
            L+
Sbjct: 760 SLA 762


>gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
           L37603]
 gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
           L37603]
          Length = 598

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/597 (43%), Positives = 385/597 (64%), Gaps = 6/597 (1%)

Query: 102 LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQY 161
           +F K YK++ Q++  V+  D + SP + +M+ +S AL +S +PF GP+ G  V Y++G+Y
Sbjct: 1   MFPKGYKHDVQIMNIVLSADPDCSPEMAAMIGSSMALSVSDIPFLGPIAGVNVGYVDGKY 60

Query: 162 VLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           V+NP + E + S LDL V+G +DAV MVE  A++++E  +L+AI FGH+E K ++     
Sbjct: 61  VINPTVAEKEVSRLDLEVAGHKDAVNMVEAGASEITESEMLEAIFFGHDEIKRLVAFQQG 120

Query: 221 LAKMCA--KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
           +       K+  +   +D + +E+  S    + L+ +    +K  R   +D LK+ +V+ 
Sbjct: 121 IIDYIQPEKQAFIPVERDEALVEKVKSLTEAKGLKDTVLTFDKQQRDINLDALKEDIVAE 180

Query: 279 FSSEHSSWNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           F  E    NE    E+ ++  D+  + VR ++ D+K+R DGR  + +R + ++VGLL R 
Sbjct: 181 FIDEEDPDNEALIKEVYAILNDLVKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRA 240

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS LF RG TQA+ V+TLG   D Q +D L   +   FM HYNF   + GE   + AP 
Sbjct: 241 HGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPG 300

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG L  RA+  ++P T+ FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI
Sbjct: 301 RREIGHGALGERALKYIIPDTSDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPI 360

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
             PVAGIAMGLV   D + IL+DI G ED LG MDFKVAGT  GITA+QMD+KI G++  
Sbjct: 361 KAPVAGIAMGLVTREDSYTILTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTRE 420

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QA++GRL I++ M + + + R +L  + P+V  M I P++IR+VIG GGK I 
Sbjct: 421 VIEEALEQARQGRLAIMDHMLQTIDQPRNELSAYAPKVVTMNIKPEKIRDVIGPGGKKIN 480

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I+++TG K++I+ DG + I +     I  ARE+I  IT   EV ++Y  +V ++  +GA
Sbjct: 481 EIIDETGVKLDIEQDGQIFIGAVDQEMINRAREIIEEITREAEVGQVYNAKVKRIEKYGA 540

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           FV     +D L+HISQ+STER+ K  DV+K GD++ VK+ + D +G++  S K +++
Sbjct: 541 FVELFPGKDALLHISQISTERINKVEDVLKLGDSIEVKVTEIDKQGRVNASHKAINE 597


>gi|146299204|ref|YP_001193795.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
           johnsoniae UW101]
 gi|187610263|sp|A5FJZ1|PNP_FLAJO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146153622|gb|ABQ04476.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
           johnsoniae UW101]
          Length = 714

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/681 (40%), Positives = 416/681 (61%), Gaps = 20/681 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DG+V+   G  ++LAT V  R+   G DF PLTV+Y+E+  A G+
Sbjct: 15  GRSISIETGKLAKQADGSVVVRLGNCMLLATAVSARTSNPGVDFLPLTVDYREKFAAAGR 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP+++E+L  R++DR +RPLF   Y  ETQV+I +M HD    P  ++ +
Sbjct: 75  FPGGFFKREARPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMIQLMSHDDNVMPDALAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF   +   +V  I+G+ V+NP R + ++  +D+ +  + D+V MVE E
Sbjct: 135 AASAALAVSDIPFYNLISEVRVARIDGKLVINPSRTELEKSDIDMMIGASLDSVAMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
             ++SE  +++AI F H   K  I A  KL AK+ ++E    + +   +      +    
Sbjct: 195 MKEISEAEMIEAIKFAHEAIKVQIHAQQKLRAKLSSQEYRTYEGEVEDEAVYAKVKAAAY 254

Query: 251 DLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKV 302
           D    C+        K  R ++   +K++  + F+ E  + N    G +   F     + 
Sbjct: 255 D---KCYAIAQEASGKAERGEKFATVKEEAKALFTEEEYAENADLAGLVGKYFYKTNKEA 311

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR V+L+K +R+DGR +  +R I  +   L   HGSSLF RG+TQA+  VTLGT  +   
Sbjct: 312 VRNVILEKGIRLDGRKTTEIRPIWCETDYLPSVHGSSLFTRGETQALATVTLGTSREANQ 371

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT
Sbjct: 372 IDSPSEQGEEKFYLHYNFPPFSTGEAKPLRGTSRREVGHGNLAQRALKNMIP--ADCPYT 429

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ DG+ F +LSDI GD
Sbjct: 430 IRVVSEVLESNGSSSMATVCAGTMALMDAGVQMVKPVSGIAMGLITDGEKFAVLSDILGD 489

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+KI G+  +IM  AL QA+ GRLHIL ++++ ++  
Sbjct: 490 EDHLGDMDFKVTGTADGITACQMDIKIDGLRYDIMEQALAQARDGRLHILGKLTETIAAP 549

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---NIDDDGTVKIASSS 599
           R  +    P++    IP + I  +IG GGKVI+ + + TG  +    +D+ G V+I  + 
Sbjct: 550 RADVKAHAPKIITRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEQGVVEILGTD 609

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657
              I+     I ++T  P+V + Y+ +V+K++DFGA V +  A   + L+H+S+L+ ER 
Sbjct: 610 PEGIKTVLAKIDALTFKPQVGEAYEVKVIKMLDFGAVVEYTAAPGNEVLLHVSELAWERT 669

Query: 658 AKTSDVVKEGDTVWVKLLDFD 678
              +DVVK GD   VK L  D
Sbjct: 670 ENVADVVKMGDVFEVKYLGVD 690


>gi|86141304|ref|ZP_01059850.1| putative polyribonucleotide nucleotidyltransferase
           [Leeuwenhoekiella blandensis MED217]
 gi|85831863|gb|EAQ50318.1| putative polyribonucleotide nucleotidyltransferase
           [Leeuwenhoekiella blandensis MED217]
          Length = 741

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/696 (40%), Positives = 427/696 (61%), Gaps = 25/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +    D  DF PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD E  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDDEVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +   +V  +NG++++NP R    +  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEVRVGRVNGEFIINPSRAQLAESDIDMVIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF------SKLEEEMS 245
            +++SE+ + +AI   H   K   EA  +LA+   K+P    ++++      ++LE+++ 
Sbjct: 194 MDEISEEEMTEAIKAAHEAIKVQCEAQIRLAEAFGKKP----TREYEPEVEDAELEKKVY 249

Query: 246 QMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            +  + +  V+     K+ R    D +K+++   FS E        I   F   +   VR
Sbjct: 250 DLTYDKVYEVAKAGSSKHERSTAFDAIKEEVKGTFSEEDLEAFGDLISKYFYKAEKAAVR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + L++ +R+DGR +  +R I  +   L   HGSS+F RG+TQA+  VTLGT  +   +D
Sbjct: 310 DLTLNEGLRLDGRKTTEIRPIWCETDYLPSVHGSSIFTRGETQALATVTLGTSREANQID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT+R
Sbjct: 370 MPSYEGEETFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMIP--ADCPYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482
           +VSEI ES+GSSSMATVC  ++A+MDAGV + KPV+GIAMGL+ D +   + +LSDI GD
Sbjct: 428 VVSEILESNGSSSMATVCAGTMAIMDAGVKLKKPVSGIAMGLITDVETGKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL QA+ GRLHILN ++  +SE 
Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVKALHQARDGRLHILNHLTDTISEP 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597
           R  + ++ P++    I  + I  +IG GGKVI+ + ++TG  + I++D     G V+I  
Sbjct: 548 REDVKDYAPKMVTTRIANEYIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIVEILG 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655
           +    I A    I SIT  P+V + YK +V+K++DFGA V +  A   + L+H+S+L+ E
Sbjct: 608 TGTEGINAVLAKIDSITFKPKVGESYKVKVIKMLDFGAVVEYLAAPGNEVLLHVSELAWE 667

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           R    SDVV  GD   VK    D R  K K+S K +
Sbjct: 668 RTENVSDVVNMGDEFEVKYFGIDSRTRKEKVSRKAL 703


>gi|308276640|gb|ADO26539.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
           pseudotuberculosis I19]
          Length = 767

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 433/723 (59%), Gaps = 48/723 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE--TVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++A+Q+DG+V  TY +  T++LAT    +  ++G DFFPLTV+ +ER 
Sbjct: 42  DFGTRTIRFETGQLAKQADGSV-TTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERM 100

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    
Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYD 160

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180
           VV++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ + +L +L V+G
Sbjct: 161 VVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAG 220

Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK 220
                       +D A++MVE  A +   + + D         +  G    KP IE + +
Sbjct: 221 RLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCR 280

Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
               LA+  AK+    P+     D  +  +E+++S+ +++ L +           + ++ 
Sbjct: 281 AQAGLAEHAAKDAQEFPLFPPYSDVIYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYMES 340

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           ++ ++++ F SE  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V 
Sbjct: 341 IEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEVE 400

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGS+LF RG+TQ + V TL   + EQ +DSLS T    ++ HYNF P +TGE  R
Sbjct: 401 LIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETGR 460

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L +
Sbjct: 461 VGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYN 520

Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D
Sbjct: 521 AGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLD 580

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL QA   R  IL  M++V+ ES  ++ ++ PR   + +P  +I  V
Sbjct: 581 TKLDGIPSEVLASALAQAYEAREAILETMAEVI-ESPDEMSKYAPRTTTVTVPVSKIGEV 639

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624
           IG  GK I  I E+TGA ++I++DGTV ++++S    EAA E I +I +  +P+V + + 
Sbjct: 640 IGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAEAAIEKINAIANPQLPKVGERFL 699

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G +VK   FGAFV     RDGL+HIS+L   +R+ K  DVV  GD V V++LD D+RGKI
Sbjct: 700 GTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGKI 759

Query: 684 KLS 686
            L+
Sbjct: 760 SLA 762


>gi|257055504|ref|YP_003133336.1| polynucleotide phosphorylase/polyadenylase [Saccharomonospora
           viridis DSM 43017]
 gi|256585376|gb|ACU96509.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Saccharomonospora viridis DSM 43017]
          Length = 823

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 285/717 (39%), Positives = 431/717 (60%), Gaps = 43/717 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A    ET+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 24  FGQRTVRFETGRLARQAAGSVVAYLDDETMVLSATTASKQPKEQFDFFPLTVDVEERMYA 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F++  +NE Q+++ V     +    V+
Sbjct: 84  AGRIPGAFFRREGRPSTDAILTCRLIDRPLRPSFAEGLRNEIQIVVTVQSLHPDDPYDVL 143

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQ 182
           ++ AASA+  ++GLPF GP+ G ++  I+G++V  P   + ++ + ++ V+G       +
Sbjct: 144 AINAASASTQIAGLPFSGPIGGVRLGLIDGEWVAFPTWSQLERATFNMVVAGRIVGDRPE 203

Query: 183 D-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKEP 229
           D A++MVE E  + + D++ +         +  G +  KP I    EA  +LA + AK  
Sbjct: 204 DVAIMMVEAEGTENTLDLIANGATAPTEKTVAEGLDAAKPFIRVLCEAQQRLADVAAKP- 262

Query: 230 IVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSE 282
            V +   F   E++    ++ +  + L  +  I  K  R   ID++K  +   V     E
Sbjct: 263 -VGEFPLFPDYEQDAYDAVAAIATDGLAKALTIAGKQERENAIDEVKNAVLERVGIGEGE 321

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                E EI + F  +  K++R  +L  KVR+DGR    +R ++A+V ++ R HGS+LF 
Sbjct: 322 AFEGREKEIGAAFRALTKKLIRQRILRDKVRIDGRGVTDIRQLAAEVSVVPRAHGSALFE 381

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL     EQ +D+LS      F+ HYNF P +TGE  R+G P RREIGHG
Sbjct: 382 RGETQILGVTTLNMLRMEQQLDTLSPETTKRFLHHYNFPPYSTGETGRVGTPKRREIGHG 441

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PV+P+  +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGI
Sbjct: 442 MLAERALVPVVPKREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGI 501

Query: 463 AMGLVKD------GDD---FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           AMGLV D      G+    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI 
Sbjct: 502 AMGLVSDEVENENGETEVRYVALTDILGAEDAFGDMDFKVAGTREIITALQLDTKLDGIP 561

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  AL+QA+  RL IL+ M++ + +   ++  + PRV  + +P D+I  VIG  GK+
Sbjct: 562 SDVLAAALEQARDARLTILDVMAEAI-DGPDEMSPYAPRVTSLKVPVDKIGEVIGPKGKM 620

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVM 631
           I  I E+TGA ++I+DDGT+ + ++     +AA E I +I +  +P+V + Y G VVK  
Sbjct: 621 INSITEETGADISIEDDGTIYVGAADGPSADAAIEKINAIANPQLPKVGERYLGTVVKTA 680

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            FGAFV     RDGLVHIS+L   +RVAK  DVV  GD + V++ D D RGKI L +
Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGNGKRVAKVEDVVHVGDKLQVEIADIDSRGKISLVL 737


>gi|326382957|ref|ZP_08204647.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198547|gb|EGD55731.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 750

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/714 (40%), Positives = 420/714 (58%), Gaps = 43/714 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R +  ETGR+A Q+ G+V+A   E T++L+T    ++ K+  DFFPLTV+ +ER YA
Sbjct: 24  FGTRTITFETGRLALQAAGSVVAYLDEGTMILSTTTASKNPKEHFDFFPLTVDVEERMYA 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q++  V+  D +    VV
Sbjct: 84  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVETVLSLDPKDLYDVV 143

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSGT- 181
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +G+  D+ V+G  
Sbjct: 144 AINAASASTQIAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVVAGRL 203

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCA 226
                A++MVE EA      ++ D         +  G    KP I    EA  +LA   +
Sbjct: 204 VDGDVAIMMVEAEATDNVLALIADGATAPSEAVVAEGLEAAKPFIATLCEAQKQLAAAAS 263

Query: 227 KE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           KE    P+    KD +   E +++     L  +  I +K  R    D LK  ++     E
Sbjct: 264 KETRDFPLFPPYKDDAY--EAVAEFATARLGEAMSIADKQERDGATDALKGDVLEALG-E 320

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                EGE+ + +  +  K+VR  +L    R+DGR    +R +SA+VG++ R HGS+LF 
Sbjct: 321 RFEGREGELGAAYRSLTKKLVRQRILTDHFRIDGRGITDIRSLSAEVGIIPRAHGSALFE 380

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG
Sbjct: 381 RGETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 440

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGI
Sbjct: 441 ALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTISLLNAGVPLKAPVAGI 500

Query: 463 AMGLVKD--------GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           AMGLV D           ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 501 AMGLVSDEVTIDGKTETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 560

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL QAK+ RL IL+ +++ + E   ++  + PR+  + IP D+I  +IG  GK I
Sbjct: 561 KVLAGALSQAKQARLTILDVLAEAIDEPD-EMSPYAPRITTIKIPMDKIGELIGPKGKTI 619

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
            GI E+TGA ++I+DDGTV I ++     +AA + + +I +  +P+V + + G VVK   
Sbjct: 620 NGITEETGANISIEDDGTVFIGAADGPSAQAAIDKVNAIANPQLPKVGERFLGTVVKTAA 679

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FGAFV     RDGLVHIS+L   +R+ K  DVVK GD + V++ D D+RGKI L
Sbjct: 680 FGAFVSLLPGRDGLVHISKLGNGKRIGKVEDVVKVGDKLQVEIADIDERGKISL 733


>gi|317508352|ref|ZP_07966026.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253350|gb|EFV12746.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 731

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 286/718 (39%), Positives = 420/718 (58%), Gaps = 39/718 (5%)

Query: 3   DVHTVEIE-----WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           +VH V  E     +  R +K +TG++A+Q+ G+V A+  E T VL+   Y    K   DF
Sbjct: 7   EVHEVTCELDNGAYGVRTVKFQTGKLAQQAAGSVFASLDEDTTVLSATTYSSQPKSQFDF 66

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+   IL  R+IDR +RP F    +NE Q+++ 
Sbjct: 67  FPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPSFVDGLRNEVQIVVT 126

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LD 175
           V+  +  +   V+++ AASA+  LSGLPF GP+ G +V  I  Q+V  P +++ +G+  D
Sbjct: 127 VLSLNPNALYDVLAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLEGAVFD 186

Query: 176 LFVSGT-----QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAI 218
           + V+G        AV+MVE EA             + +E+VV + +       K +  A 
Sbjct: 187 MVVAGRVLDDGDVAVMMVEAEATDHAIKLIEGGATKPTEEVVAEGLEAAKPFLKQLAIAQ 246

Query: 219 SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV----SCFIPEKYVRCKQIDDLKKK 274
             LA +  KE    + + F   ++++ + +  + R     +  +P K  R  +I+++K  
Sbjct: 247 EALAAVAGKE--AFELQQFHAYQQDVYEAVDFNARAVLSEALSLPGKLEREARIEEIKSA 304

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
                  +     EGEI + F  +  K+VR  +L    R+DGR    +R +S ++  + R
Sbjct: 305 AKEQLEPQFEG-REGEISAAFRSLNKKLVRERILSDGFRIDGRGLREIRPLSVEISPIPR 363

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS+LF RG+TQ + V TL   +  Q VD+L    +  +M HYNF P +TGE  R+G+P
Sbjct: 364 VHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVTKRHYMHHYNFPPYSTGETGRVGSP 423

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PVLP  A FPY +R VSE   S+GS+SM +VC S+++L+ AGVP
Sbjct: 424 KRREIGHGALAERALVPVLPDQADFPYAIRQVSEALGSNGSTSMGSVCASTMSLLAAGVP 483

Query: 455 ISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           I  PVAGIAMGLV    +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ 
Sbjct: 484 IKAPVAGIAMGLVSGEVNGETKYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLD 543

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++  AL QAK  R  IL+ ++  + E   +L    PR+  + IP D+I  VIG  
Sbjct: 544 GIPSQVLAGALAQAKEARDTILDVIADAIDEPG-ELSPHAPRITTIKIPVDKIGEVIGPK 602

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628
           GK+I  I E+TGA ++I+DDGTV +A++S    +AA + I +I +  +P+V + Y G VV
Sbjct: 603 GKMINSITEETGANISIEDDGTVYVAATSGDSAQAAIDKINAIANPQLPKVGERYLGTVV 662

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           K   FGAFV     +DGLVHIS+L   +R+A   DVV+ G  + V++ D DDRGKI L
Sbjct: 663 KTTAFGAFVSLTPGKDGLVHISKLGNGKRIASVEDVVQIGSKLRVEIADIDDRGKISL 720


>gi|329936628|ref|ZP_08286335.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces griseoaurantiacus
           M045]
 gi|329303858|gb|EGG47741.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces griseoaurantiacus
           M045]
          Length = 740

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/708 (39%), Positives = 419/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGTRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ +        +K AK   +
Sbjct: 197 AIMMVEAEATEKTIQLIKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTGAVRPELAQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPFSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLNGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDRPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|117928715|ref|YP_873266.1| polynucleotide phosphorylase/polyadenylase [Acidothermus
           cellulolyticus 11B]
 gi|187470956|sp|A0LV20|PNP_ACIC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117649178|gb|ABK53280.1| Polyribonucleotide nucleotidyltransferase [Acidothermus
           cellulolyticus 11B]
          Length = 782

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 291/720 (40%), Positives = 432/720 (60%), Gaps = 41/720 (5%)

Query: 3   DVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF 57
           DVHT E       +  R ++ ETGR+ARQ+ G+ +A  G+T+VL+     +  ++  DFF
Sbjct: 5   DVHTAEAVIDNGSFGVRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFF 64

Query: 58  PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117
           PLTV+ +ER YA G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ V
Sbjct: 65  PLTVDVEERLYAAGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTV 124

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDL 176
           +  D E    VV++ AAS + +L+GLPF GP+ G ++ +I+G +V  P   E ++ + D+
Sbjct: 125 LAVDPEHLYDVVAINAASMSTLLAGLPFSGPIGGVRMAHIDGTWVAFPTYSELERATFDM 184

Query: 177 FVSGT-----QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----S 219
            V+G        A++MVE EA + +  ++ +         +  G    KP I  +    S
Sbjct: 185 VVAGRVLPDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLCAAQS 244

Query: 220 KLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           +LA   AK     P+  D +D   + + ++  +++D+  +  I  K  R   +D++    
Sbjct: 245 ELAARAAKPVTEFPLFRDYED--DVYDAVAATVRDDVARALTIAGKQEREAALDEVANTA 302

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +     E  +  E EI++    +  K+VR  ++ +KVR+DGR    +R ++A+VG++ R 
Sbjct: 303 LGRLG-ERFAGREKEILAALRALTKKLVRERIIREKVRIDGRGLTDIRPLTAEVGIVPRV 361

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS+LF RG+TQ + V TL     EQ +D++S   +  +M HYNF P +TGEV R+G+P 
Sbjct: 362 HGSALFERGETQILGVTTLNMLRMEQQLDTVSPRTKKRYMHHYNFPPYSTGEVGRVGSPK 421

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+
Sbjct: 422 RREIGHGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPL 481

Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGL+ D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 482 RAPVAGIAMGLISDTVDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDG 541

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++  AL QA+  RL IL+ M+K +SE    +  + PR+  + IP DQI  VIG  G
Sbjct: 542 IPASVLAAALPQAREARLTILDVMAKAISEP-APMSPYAPRIITIKIPVDQIGAVIGPKG 600

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K+I  I + TGA++ I+DDGT+ I ++     EAAR  I +I +  +PEV + Y G VVK
Sbjct: 601 KIINQIQDDTGAEITIEDDGTIYIGATEGTAAEAARAAISAIANPQLPEVGERYLGTVVK 660

Query: 630 VMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              FG FV     +DGL+HIS+L       RV    DV+K GD + V++ D D RGK+ L
Sbjct: 661 ATPFGVFVSLLPGKDGLLHISELRKMAGGRRVENVEDVLKVGDKIQVEIRDIDARGKLSL 720


>gi|269127530|ref|YP_003300900.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermomonospora curvata DSM
           43183]
 gi|268312488|gb|ACY98862.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermomonospora curvata DSM
           43183]
          Length = 775

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 290/716 (40%), Positives = 432/716 (60%), Gaps = 38/716 (5%)

Query: 4   VHTVEI-----EWAGRPLKLETGRIARQSDG-AVLATYGETVVLATVVYDRSLKDGQDFF 57
           VHT E       +  R L+ ETGR+ARQ+ G AV+    ET+VL+     +  K+  DFF
Sbjct: 9   VHTAEAVIDNGSFGTRTLRFETGRLARQAAGSAVVYLDEETMVLSATTVSKKPKETLDFF 68

Query: 58  PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117
           PLTV+ +ER YA G+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE Q++  V
Sbjct: 69  PLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQIVETV 128

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDL 176
           +    E    VV++ AAS + +LSG+PF GP+ G +V  I+GQ+V  P   E ++ + D+
Sbjct: 129 LALHPEHLYDVVAINAASMSTLLSGVPFSGPIGGVRVALIDGQWVAFPTHSELERATFDM 188

Query: 177 FVSG-TQD----AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAIS 219
            V+G T D    A++MVE E+ + +  +V +         +  G    KP I    +A  
Sbjct: 189 VVAGRTLDNGDVAIMMVEAESTRDTLKLVAEGAPAPTEERVAEGLEASKPFIKILCDAQR 248

Query: 220 KLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           +LA + AKE    P+ +D  D   + E +S  + EDL  +  I  K  R  ++++L+   
Sbjct: 249 ELAAVAAKETIEFPLFLDYTD--DVLEAVSATVSEDLAQALTIVGKQEREAKLEELRAAT 306

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +     +    ++ E+ + F  +  K++R  ++   VR+DGR  + +R +SA+V ++ R 
Sbjct: 307 IEKLLPDFEGRDK-ELAAAFRAVTKKLIRERIVRDGVRIDGRGVKDLRQLSAEVHVVPRV 365

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS+LF RG+TQ + V TL     EQ +D+LS  +   +M HYNF P +TGE  R+G+P 
Sbjct: 366 HGSALFERGETQILGVTTLNMLRMEQTIDTLSPERTKRYMHHYNFPPYSTGETGRVGSPK 425

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+
Sbjct: 426 RREIGHGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPL 485

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
              VAGIAMGL+ +  +++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   
Sbjct: 486 KDMVAGIAMGLIYENGEYVTLTDILGAEDAFGDMDFKVAGTRDLITALQLDTKLDGIPAE 545

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QAK  RL IL+ M++ +SE   +L  + PR+  + +P D+I  VIG  GK+I 
Sbjct: 546 VLAAALKQAKAARLAILDVMAEAISEP-AELSPYAPRIITIKVPVDKIGEVIGPKGKMIN 604

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I + TGA + I+DDGT+ + +      EAAR+ I +I +  +PEV + Y G VVKV  F
Sbjct: 605 SIQDDTGADITIEDDGTIYVGALDGPSAEAARQAINAIANPHMPEVGERYLGTVVKVTTF 664

Query: 634 GAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     +DGL+H+SQ+       R+    D +K G+ V V++ + D RGK+ L
Sbjct: 665 GAFVSLLPGKDGLLHVSQIRKLHGGARIDNVEDYLKVGEKVQVEVTEIDPRGKLSL 720


>gi|331698425|ref|YP_004334664.1| polyribonucleotide nucleotidyltransferase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953114|gb|AEA26811.1| Polyribonucleotide nucleotidyltransferase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 750

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/702 (40%), Positives = 419/702 (59%), Gaps = 29/702 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A    ET++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 21  FGTRTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQPKEQFDFFPLTVDVEERMYA 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           +GKIPG + RRE RP  + IL  R+IDR +RP F    +NE Q+++ V+  D       +
Sbjct: 81  IGKIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTVLSLDPRDPYDAL 140

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT----QDA 184
           ++ AASA+  L+GLPF GP+ G +V  I+GQ+V  P+ ++ Q +  D+ V+G       A
Sbjct: 141 AINAASASTQLAGLPFSGPIGGVRVALIDGQWVAFPQYEDLQRAVFDMVVAGRIVGDDVA 200

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAKEPIVI 232
           ++MVE EA   + ++V           +  G    KP I ++     +LA + AK     
Sbjct: 201 IMMVEAEATTETVELVAGGAQAPTEQVVAQGLEAAKPFIRSLCVAQQQLADVAAKPTGSF 260

Query: 233 DSKDFSKLE--EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            +    + +  E +     +DL  +  I  K  R  +ID++K  +++    E     E E
Sbjct: 261 PTYPAYQPDAFEAVEAAASDDLAAALTIAGKQEREARIDEVKAGVLASLG-EKFEGREKE 319

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           + + F  +  K+VR  +L  +VR+DGR    +R +SA+V ++ R HGS+LF RG+TQ + 
Sbjct: 320 LGAAFRSLNKKLVRRRILTDQVRIDGRGLTDIRPLSAEVEVVPRAHGSALFERGETQIMG 379

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TL     EQ +DSL       ++ HYNF P +TGE  R+G+P RREIGHG LA RA+ 
Sbjct: 380 VTTLNMLRMEQQIDSLGPETHKRYLHHYNFPPYSTGETGRVGSPKRREIGHGALAERALL 439

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGLV D 
Sbjct: 440 PVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDE 499

Query: 471 DD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
            D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL QAK 
Sbjct: 500 VDGKATYVALTDILGAEDAFGDMDFKVAGTSDFVTALQLDTKLDGIPSEVLAAALNQAKD 559

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RL IL  + + + +   ++  + PRV  + +P D+I  VIG  GK+I  I EQTGA ++
Sbjct: 560 ARLTILEVLGEAI-DGPDEMSTYAPRVTAIKVPVDKIGEVIGPKGKMINSITEQTGADIS 618

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           I+DDGT+ + ++     EAA  MI +I +  +P++ + + G VVK   FGAFV     +D
Sbjct: 619 IEDDGTIYVGAADGPSAEAAIGMINAIANPQLPKIGERFLGTVVKTAAFGAFVSLVPGKD 678

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GLVHIS+L   +R+ K  DVVK GD + V++ D D+RGKI L
Sbjct: 679 GLVHISKLGNGKRIGKVEDVVKVGDKLRVEVTDIDNRGKISL 720


>gi|239928583|ref|ZP_04685536.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291436909|ref|ZP_06576299.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339804|gb|EFE66760.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 739

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 284/715 (39%), Positives = 420/715 (58%), Gaps = 37/715 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRTLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ + +          K  A+
Sbjct: 197 AIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLAAKAAKPTAE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELAQALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 K---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDRPD-EMSPHAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L   + D+
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLVPVIEDE 727


>gi|228469449|ref|ZP_04054457.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
 gi|228309024|gb|EEK17667.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
          Length = 736

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 289/691 (41%), Positives = 434/691 (62%), Gaps = 17/691 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGAV  T G TV+LA V   +  K   DF PL V Y+E+  A+G+
Sbjct: 14  GRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKDAKPDVDFMPLQVEYKEKFSAIGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ RRE R ++ EIL  R++DR++RPLF   Y  E  V I +   D    P  ++ +
Sbjct: 74  FPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFSSDGVDMPDALAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAAL +S +PF GP+   +V  ++G +V+NP  ++ ++  +DL V+ T D ++MVE E
Sbjct: 134 AASAALAVSDIPFGGPISEVRVARVDGDFVINPTFEQLERADIDLMVAATLDNIMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHN----ECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
             ++ E+ +L+AI   H     +C+  +E    + KM  +E    + +D  +L E M + 
Sbjct: 194 MEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMVKRE-YPAEEQD-EELRERMQRE 251

Query: 248 IKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           + + + +V+    +K+ R      + ++  + F++E        I   + D++   +R +
Sbjct: 252 LYDKIYKVATAGTDKHARGDAFAAIVEEFKAQFTAEELEEKGMIIDRYYHDMEKAAMRRM 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD+  R+DGR ++ +R I  +   L   HGS++F RG+TQ++  VTLGT+ DE+ VD +
Sbjct: 312 ILDEGKRLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDV 371

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
               +  F++HYNF P +TGE       SRREIGHG LA RA+  ++P+   +PY +R++
Sbjct: 372 LNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYVIRVM 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484
           S+I ES+GSSSMATVC  +LAL DAGV + KPV+GIAMGL+ +  G ++ ILSDI GDED
Sbjct: 430 SDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNYAILSDILGDED 489

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GRLHILN++ +   E+R 
Sbjct: 490 HLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILNKIEEAQPEARP 549

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSLA 601
            +    PR+E + I  + I  VIG GGK+I+GI E++GA VNI   D+ G V+I+SS+  
Sbjct: 550 DMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDNYGIVEISSSNKE 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++AA  M+R I   PEV ++YKG V  VM +G FV F   +DGL+HIS++  +R A   
Sbjct: 610 SLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHISEIDWKRFATIE 669

Query: 662 DV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  +KEGDT+ VKL++ D + GK  LS K +
Sbjct: 670 ETGLKEGDTIDVKLIEIDPKTGKFSLSHKAL 700


>gi|240171316|ref|ZP_04749975.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium kansasii
           ATCC 12478]
          Length = 756

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 286/723 (39%), Positives = 421/723 (58%), Gaps = 50/723 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   E  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 13  FGTRTIRFETGRLALQAAGAVVAYLDEENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 73  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPNDLYDVL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQDA 184
           ++ AASA+  L GLPF GP+   +V  I+G +V  P +++  +   D+ V+G    T DA
Sbjct: 133 AINAASASTQLGGLPFSGPIGAVRVALIDGTWVAFPTVEQIGRAVFDMVVAGRIVGTDDA 192

Query: 185 ------VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCA 226
                 ++MVE EA +   D++           +  G    KP I A+     +LA  C 
Sbjct: 193 GKPDVAIMMVEAEATENVIDLLEGGAAAPTESVVAQGLEAAKPFIAALCTAQQELADACG 252

Query: 227 KE-------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                    P+  D  D   +   +S +  ++L  +  I  K  R ++ D++K +++   
Sbjct: 253 ASAGTAGDFPVFPDYGD--DVYYAVSSVATDELAAALTIAGKAERNQRTDEIKTQVLERL 310

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  +    E EI + F  +  K+VR  ++    R+DGR    +R +SA+V ++ R HGS+
Sbjct: 311 ADTYPG-REKEIGAAFRALTKKLVRQRIVTDHFRIDGRGITDIRALSAEVAVVPRAHGSA 369

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 370 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 429

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PV
Sbjct: 430 GHGALAERALVPVLPGVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 489

Query: 460 AGIAMGLVKD-----GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           AGIAMGLV D     GDD       F+ L+DI G ED  G MDFKVAGT   +TA+Q+D 
Sbjct: 490 AGIAMGLVSDDIEVEGDDGKRTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 549

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI   ++  AL+QA+  RL IL  M++ +     ++  + PRV  + +P D+I  VI
Sbjct: 550 KLDGIPSQVLAGALEQARDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVI 608

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625
           G  GKVI  I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G
Sbjct: 609 GPKGKVINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 668

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
            VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI 
Sbjct: 669 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 728

Query: 685 LSM 687
           L +
Sbjct: 729 LVL 731


>gi|42632644|gb|AAS22253.1| polynucleotide phosphorylase [Aster yellows witches'-broom
           phytoplasma]
          Length = 716

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/697 (40%), Positives = 419/697 (60%), Gaps = 38/697 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D ++L  Y +TVVL T+V+ R   +  DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDSSILVRYQDTVVLTTMVFSRK-PNNLDFLPLTVIYQEKLYAAGKIPG 73

Query: 76  GYLR-RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
            +L  R     ++EIL SR+IDRS+RPLF   ++ E QVI  V+  D +    + SM+ +
Sbjct: 74  SFLTPRRGGSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGS 133

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           S +L++S +PF   + G  V  IN ++++NP L +    +L L V+GT+  V M+E  AN
Sbjct: 134 SLSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKHNVTMIEAHAN 193

Query: 194 QLSEDVVLDAIIFGHNECKPVI---EAIS------KLAKMCAKEPIVIDSKDFSKLEEEM 244
           ++SE   L+AI F H   K +    E I       K+ K   +   +     F+K   ++
Sbjct: 194 EVSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPVKMTKTLHQTEQIQQQSFFAKNHSQV 253

Query: 245 SQMIKEDLRVSCFIPEKYVRCK-QIDDLKKKM--------VSYFSSEHSSWNEGEIVSVF 295
            Q I     +SC       + K QI D  K+         ++ F  E    +     ++F
Sbjct: 254 KQAI-----LSCNSKNDLQQLKEQILDQAKQTPFFKTIDAITVFDYEAHKKHLQITENLF 308

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +  + +R+++L +K+R D R+ E +R + +Q+ LL R HGS+LF RG TQ++  VTLG
Sbjct: 309 QKLSKQEMRSLILQEKIRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLG 368

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + + +D LS  Q   FM+HYNF P + G V R  APSRREIGHG LA +AI  VLP+
Sbjct: 369 CLSESKIIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPE 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
              FPYT+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAGI++GLV D   + +
Sbjct: 429 EKDFPYTIRVVSEILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETNKY 488

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +ILSDI G EDH+G MD K+AGT+ GITA+QMD+KI GI   I+  A  QAK+GRLHIL 
Sbjct: 489 VILSDIQGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIPFKILQEAFLQAKKGRLHILE 548

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGT 592
           +M++ +S+ RL++ ++ P+V +M I P++IR++IG GGK+I  I+E   G K++I+ DG 
Sbjct: 549 QMNQTISQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGR 608

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGL 646
           V +  S+L  ++     I S+    +V   Y+  +++ +        GA    C   +GL
Sbjct: 609 VFVMHSNLETVKKTVAFIESLIQEIQVGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGL 668

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +H++++   +  K +DV+K G+TV VK    ++RG+I
Sbjct: 669 IHVNKM---KFQKITDVLKIGETVLVKCTKINERGRI 702


>gi|300858688|ref|YP_003783671.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686142|gb|ADK29064.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 767

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/723 (39%), Positives = 433/723 (59%), Gaps = 48/723 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE--TVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++A+Q+DG+V  TY +  T++LAT    +  ++G DFFPLTV+ +ER 
Sbjct: 42  DFGTRTIRFETGQLAKQADGSV-TTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERM 100

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    
Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYD 160

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180
           VV++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ + +L +L V+G
Sbjct: 161 VVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAG 220

Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK 220
                       +D A++MVE  A +   + + D         +  G    KP IE + +
Sbjct: 221 RLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCR 280

Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
               LA+  AK+    P+     D  +  +E+++S+ +++ L +           + ++ 
Sbjct: 281 AQAGLAEHAAKDAQEFPLFPPYSDVIYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYMES 340

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           ++ ++++ F SE  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V 
Sbjct: 341 IEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEVE 400

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGS+LF RG+TQ + V TL   + EQ +DSLS T    ++ HYNF P +TGE  R
Sbjct: 401 LIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETGR 460

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L +
Sbjct: 461 VGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYN 520

Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D
Sbjct: 521 AGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLD 580

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL QA   R  IL  M++V+ ES  ++ ++ PR+  + +P  +I  V
Sbjct: 581 TKLDGIPSEVLASALAQAYEAREAILETMAEVI-ESPDEMSKYAPRITTVTVPVSKIGEV 639

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624
           IG  GK I  I E+TGA ++I++DGTV ++++S     AA E I +I +  +P+V + + 
Sbjct: 640 IGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAGAAIEKINAIANPQLPKVGERFL 699

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G +VK   FGAFV     RDGL+HIS+L   +R+ K  DVV  GD V V++LD D+RGKI
Sbjct: 700 GTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGKI 759

Query: 684 KLS 686
            L+
Sbjct: 760 SLA 762


>gi|169630188|ref|YP_001703837.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium abscessus
           ATCC 19977]
 gi|226702665|sp|B1MD62|PNP_MYCA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169242155|emb|CAM63183.1| Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium abscessus]
          Length = 755

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 292/717 (40%), Positives = 425/717 (59%), Gaps = 50/717 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ G+V+A    ET++L+T    ++ KD  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGSVVAYLDDETMLLSTTAASKTPKDHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  +      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLNPADLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AASA+  L+GLPF GPV G +V  I GQ+V  P +++ ++   D+ V+G        
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIEGQWVAFPTVEQLEKAVFDMVVAGRKVGTAGD 201

Query: 181 TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI----SKLAKM 224
           +  A++MVE EA               +E VV +    G    KP I A+     +LA  
Sbjct: 202 SDVAIMMVEAEATDNVIALIDGGAGAPTETVVAE----GLEAAKPFIAALCTAQEELAGS 257

Query: 225 CAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            AK     P+  D +D   +   ++ +  E L  +  I  K  R ++ D++K  ++    
Sbjct: 258 AAKPTGEFPLFPDYQD--DVYAAVAAVATEPLSQALSIAGKAERDEKTDEIKVDVLGRLQ 315

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            E     E EI + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HGS+L
Sbjct: 316 -EGFDGREKEIGAAFRSLTKKLVRQRILKDQFRIDGRGVTDIRALSAEVAVIPRAHGSAL 374

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RREIG
Sbjct: 375 FERGETQIMGVTTLDMIKMAQQVDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 434

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVA
Sbjct: 435 HGALAERALIPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 494

Query: 461 GIAMGLVKDGDD---------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           GIAMGLV D  +         F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 495 GIAMGLVSDDIELADGTAERRFVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 554

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  R  IL  M++ + ++  ++  + PR+  + +P D+I  VIG  G
Sbjct: 555 IPSQVLAAALSQAKDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKG 613

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K+I  I E+TGA ++I+DDGTV + ++  A  +AA + I +I +  +P++ + + G VVK
Sbjct: 614 KMINSITEETGANISIEDDGTVFVGAADGASAQAAIDKINAIANPQLPKIGERFLGTVVK 673

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             DFGAFV     RDGLVHIS+L   +R+AK  DVVK GD + V++ D D+RGKI L
Sbjct: 674 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVKVGDKIQVEIADIDNRGKISL 730


>gi|182435576|ref|YP_001823295.1| polynucleotide phosphorylase/polyadenylase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326776210|ref|ZP_08235475.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
           XylebKG-1]
 gi|226702691|sp|B1VXZ6|PNP_STRGG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|178464092|dbj|BAG18612.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase alpha chain [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656543|gb|EGE41389.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 737

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/712 (39%), Positives = 424/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AAS + +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +  +V D         +  G +  KP I+A+        SK AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLDAAKPFIKALCKAQSDLASKAAKPVGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ +D +D   + E +++ +  +L+ +  I  K  R  ++D +K+    K++  F    
Sbjct: 257 FPVFLDYQD--DVFEALAKAVTSELKQALTIAGKQDREAELDRVKEIAAEKLLPAFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +  ++VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRSLTKQLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIA
Sbjct: 430 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIA 489

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGT+ I + + ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGADITIEDDGTIYIGAQAGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLMPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|296394402|ref|YP_003659286.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181549|gb|ADG98455.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rotundus DSM 44985]
          Length = 737

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 286/722 (39%), Positives = 426/722 (59%), Gaps = 47/722 (6%)

Query: 3   DVHTVEIE-----WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           +VH V  E     +  R +K +TG++A+Q+ G+V AT  E T VL+   +    K   DF
Sbjct: 7   NVHEVTCELDNGAFGVRTVKFQTGKLAQQAAGSVFATLDEDTSVLSATTFSAQPKSQFDF 66

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F+   +NE Q+++ 
Sbjct: 67  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFADGLRNEVQIVVT 126

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LD 175
           V+  +  +   V+++ AASA+  LSGLPF GP+ G +V  I  Q+V  P +++ Q +  D
Sbjct: 127 VLSLNPNAVYDVLAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLQEAVFD 186

Query: 176 LFVSG--TQD---AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAI 218
           + V+G   +D   AV+MVE EA             + +E VV +    G    KP ++ +
Sbjct: 187 MVVAGRVLEDGDVAVMMVEAEATDHAIKLIEGGATKPTEQVVAE----GLEAAKPFLKQL 242

Query: 219 S----KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED----LRVSCFIPEKYVRCKQIDD 270
           +     LA +  KE    + + F   ++++   ++ +    L  +  +P K  R  +I+ 
Sbjct: 243 AIAQEALAAVAGKE--AFELQQFHPYQQDVYDAVEFNAGAVLSEALSLPGKVEREARIEA 300

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           +K +  +    +     E EI + F  +  K+VR  +L    R+DGR    +R +SA++ 
Sbjct: 301 IKAEAKAQLEPQFEG-RESEISAAFRSLNKKLVRERILSDGFRIDGRGLRDIRPLSAEIS 359

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
            + R HGS+LF RG+TQ + V TL   +  Q VD+L    +  +M HYNF P +TGE  R
Sbjct: 360 PVPRVHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVSKRHYMHHYNFPPYSTGETGR 419

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+ 
Sbjct: 420 VGSPKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLA 479

Query: 451 AGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVPI  PVAGIAMGLV    +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D
Sbjct: 480 AGVPIKAPVAGIAMGLVSGEVNGETKYVTLTDILGAEDAFGDMDFKVAGTADFVTALQLD 539

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL QAK  R  +L+ ++  + E   +L  F PR+  + IP D+I  V
Sbjct: 540 TKLDGIPSQVLAEALAQAKEARDTLLDVIANAIDEP-AELSPFAPRITTIKIPVDKIGEV 598

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624
           IG  GK+I  I E+TGA ++I+DDGTV +A++S    +AA + I +I +  +P+V + Y 
Sbjct: 599 IGPKGKMINSITEETGANISIEDDGTVYVAAASGDSAQAAIDKINAIANPQLPKVGERYL 658

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G VVK   FGAFV     +DGLVHIS+L   +R+    DVV+ G  + V++ D DDRGKI
Sbjct: 659 GTVVKTTAFGAFVSLTPGKDGLVHISKLGNGKRIVSVEDVVQIGSKLRVEIADIDDRGKI 718

Query: 684 KL 685
            L
Sbjct: 719 SL 720


>gi|134102361|ref|YP_001108022.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|187611285|sp|A4FM22|PNP_SACEN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133914984|emb|CAM05097.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
           nucleotidyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 750

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/709 (39%), Positives = 422/709 (59%), Gaps = 39/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 23  FGTRTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYA 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    V+
Sbjct: 83  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 142

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++  ASA+  LSGLPF GPV G ++  I+GQ+V  P  ++ ++   D+ V+G       A
Sbjct: 143 AINGASASTQLSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERAVFDMVVAGRIVGDDVA 202

Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKMCAKE-------- 228
           ++MVE EA + +  +V         + +  G    KP I  + +  +  A+         
Sbjct: 203 IMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLCQAQQQLAQAAGKATEEF 262

Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           P+     D  F+ +E+  S  + E L+++     K  R  ++D++K  ++    +     
Sbjct: 263 PVFPAYADDAFTAVEQAASAELAEALKIAS----KQERENRLDEIKAAVLEKVGTGEGEQ 318

Query: 287 NEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
            EG   E+ + F  +  K+VR  ++  +VR+DGR    +R +SA+VG++ R HGS+LF R
Sbjct: 319 FEGREKEVGAAFRSLTKKLVRQRIIRDQVRIDGRGLTDIRSLSAEVGVIPRAHGSALFER 378

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 379 GETQILGVSTLNMLRLEQTIDSLSPETTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGA 438

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY LR VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 439 LAERALIPVLPTREEFPYALRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIA 498

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  
Sbjct: 499 MGLVSDEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPSEVLAQ 558

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  R  IL  M++ + +   ++    PRV  ++IP D+I  VIG  GK+I  I E
Sbjct: 559 ALGQARDARFTILEVMAEAIGKPD-EMSPHAPRVTSISIPVDKIGEVIGPKGKMINSITE 617

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
           +TGA++ I+DDGT+ + ++     EAA + I +I +  +P+V + + G VVK   FGAFV
Sbjct: 618 ETGAEITIEDDGTIYVGAADGPSAEAAIDKINAIANPQLPKVGERFLGTVVKTAAFGAFV 677

Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGLVHIS+L   +R+ K  DVV  GD + V++ D D RGKI L
Sbjct: 678 SLLPGKDGLVHISKLGNGKRIGKVEDVVNVGDKLRVEIADIDSRGKISL 726


>gi|291009326|ref|ZP_06567299.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 747

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/709 (39%), Positives = 422/709 (59%), Gaps = 39/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 20  FGTRTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    V+
Sbjct: 80  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++  ASA+  LSGLPF GPV G ++  I+GQ+V  P  ++ ++   D+ V+G       A
Sbjct: 140 AINGASASTQLSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERAVFDMVVAGRIVGDDVA 199

Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKMCAKE-------- 228
           ++MVE EA + +  +V         + +  G    KP I  + +  +  A+         
Sbjct: 200 IMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLCQAQQQLAQAAGKATEEF 259

Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           P+     D  F+ +E+  S  + E L+++     K  R  ++D++K  ++    +     
Sbjct: 260 PVFPAYADDAFTAVEQAASAELAEALKIAS----KQERENRLDEIKAAVLEKVGTGEGEQ 315

Query: 287 NEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
            EG   E+ + F  +  K+VR  ++  +VR+DGR    +R +SA+VG++ R HGS+LF R
Sbjct: 316 FEGREKEVGAAFRSLTKKLVRQRIIRDQVRIDGRGLTDIRSLSAEVGVIPRAHGSALFER 375

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 376 GETQILGVSTLNMLRLEQTIDSLSPETTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGA 435

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY LR VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 436 LAERALIPVLPTREEFPYALRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIA 495

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  
Sbjct: 496 MGLVSDEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPSEVLAQ 555

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  R  IL  M++ + +   ++    PRV  ++IP D+I  VIG  GK+I  I E
Sbjct: 556 ALGQARDARFTILEVMAEAIGKPD-EMSPHAPRVTSISIPVDKIGEVIGPKGKMINSITE 614

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
           +TGA++ I+DDGT+ + ++     EAA + I +I +  +P+V + + G VVK   FGAFV
Sbjct: 615 ETGAEITIEDDGTIYVGAADGPSAEAAIDKINAIANPQLPKVGERFLGTVVKTAAFGAFV 674

Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGLVHIS+L   +R+ K  DVV  GD + V++ D D RGKI L
Sbjct: 675 SLLPGKDGLVHISKLGNGKRIGKVEDVVNVGDKLRVEIADIDSRGKISL 723


>gi|256371446|ref|YP_003109270.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008030|gb|ACU53597.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 792

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/712 (39%), Positives = 421/712 (59%), Gaps = 31/712 (4%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           PL+ ETG++A Q++GAV+A  G T VL T    + +++G DFFPLTV+ +ER YA GKIP
Sbjct: 16  PLRFETGKLALQANGAVVARLGGTTVLVTATGAKHVREGIDFFPLTVDVEERMYAAGKIP 75

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           G + RRE R T+  IL +R+IDR +RP F+  ++NE  V+  V+  DL +   V+++ AA
Sbjct: 76  GSFFRREGRATDQAILTARLIDRPLRPSFADGFRNEVHVVATVLGADLVNPHDVLAINAA 135

Query: 135 SAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE-DQGSLDLFVSG------TQDAVL 186
           SAALM+SGLPFEGP+   +V    +G ++  P   + D  S +L V+G      T  A++
Sbjct: 136 SAALMVSGLPFEGPIGAVRVALAADGSWIPFPTFQQGDASSFELVVAGRKTSDGTDIAIM 195

Query: 187 MVE----------LEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           MVE           EAN    +E  V + ++      +  IE   +L       P    +
Sbjct: 196 MVEAGGTEATWGAFEANAAIPTEATVAEGLVAAKQWIRESIELQEELVAKLDHRPTFAWT 255

Query: 235 --KDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
             +D+ + +   ++++ +E L  +    +K  R   +D     + +  + E     E E+
Sbjct: 256 PMRDYEEDVLVRVNEVGRERLAAANAHTDKVTRQDALDAAGDAIWAELADEFPE-REREV 314

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +    +  ++VR  +  + VR+DGRD+ T+R +  +VGL+   HGS LF RG+TQ + +
Sbjct: 315 RAAIRRVTKEIVRERITREGVRIDGRDTTTIRPLLIEVGLIPTAHGSGLFQRGETQVLNI 374

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLG     Q +D+L   +   +M HYN  P ATGE   M  P RREIGHG LA RA+ P
Sbjct: 375 CTLGMPRMNQQLDTLGVDEEKRYMHHYNMPPFATGETGFMRGPKRREIGHGLLAERALVP 434

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP  ++FPY LR+VSE+  S+GS+SMA+VCGS+L+LMDAGVPI   V GIAMGL+    
Sbjct: 435 VLPPESEFPYALRLVSEVLSSNGSTSMASVCGSTLSLMDAGVPIRAAVGGIAMGLIAHDG 494

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            +  L+DI G ED  G MDFKVAGT   +TA+Q+D KI GI   ++  AL+QA++ R+ I
Sbjct: 495 VYTTLTDILGAEDAFGDMDFKVAGTREFVTALQLDTKIDGIPSEVLAAALEQARQARVSI 554

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M  V+   R ++ E  PR+    +P D++  +IG  GK I  + ++TGA V+IDDDG
Sbjct: 555 LDQMLAVIPAPRSEVAETAPRLITFQVPLDKVGEIIGPKGKTINTLQQETGADVSIDDDG 614

Query: 592 TVKIASSSLAEIEAAREM---IRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            V        +IEAARE    I+ I + P+  + ++Y+G+VV +  FGAFV+    +DGL
Sbjct: 615 VVGTVVIGARDIEAAREAERRIQLILNPPQATLGEVYEGKVVGMTKFGAFVNVLPGKDGL 674

Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           VHIS+L   +RV +  DV++ G  + V++ D D  GK+ LS+ V D+N   P
Sbjct: 675 VHISKLGRGKRVERVEDVLEMGQVLKVRVDDIDPSGKLSLSI-VDDENGETP 725


>gi|329768891|ref|ZP_08260319.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
 gi|328837254|gb|EGF86891.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
          Length = 618

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/561 (45%), Positives = 376/561 (67%), Gaps = 7/561 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPLTVNY+E+ YA
Sbjct: 11  KWAGKELTVEIGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPLTVNYEEKMYA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+  + +  P + 
Sbjct: 70  VGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S +L +S +PF+GP+ G  V YI+G+Y++NP +++ ++  +DL V+GT DA+ MV
Sbjct: 130 AMLGSSLSLSVSNIPFKGPIAGVTVGYIDGEYIINPNIEQLEKSEIDLKVAGTSDAINMV 189

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247
           E  A ++SE+++L+AI+FGH E K +I    ++ +   +E + ++ K   + +  E+ ++
Sbjct: 190 EAGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIVEEIGQEKMEVELKVIDENIYNEVLEL 249

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----VFEDIQAKVV 303
              +++ +  I +K  R + I  +K+K+V+ F    S  +E +IV       + I    V
Sbjct: 250 ALSEMKSAISIKDKQERDEAISAVKEKVVAIFEERASEEDELDIVKEAKLSLDKIVKDEV 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  + + KVR DGR    +R +++++ +L RTHGS+LF RG TQ++ VVTLG   DEQ +
Sbjct: 310 RREITEDKVRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+P    FPYT+
Sbjct: 370 DDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + + IL+DI G E
Sbjct: 430 RIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHYTILTDIQGME 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL+ M++ +S  R
Sbjct: 490 DHLGDMDFKVAGTTDGITALQMDIKIDGLSEQILKESLEQARIGRLQILDHMNETISAPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIR 564
            ++  + P+++I+ I P++++
Sbjct: 550 EEVSTYAPKIKIIKIKPEKLK 570


>gi|145344077|ref|XP_001416565.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576791|gb|ABO94858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 823

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 289/694 (41%), Positives = 417/694 (60%), Gaps = 26/694 (3%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           ++LETG+I  Q++GAV A+ GETV+  T    R       F PLTVNY ER  A G+  G
Sbjct: 80  VRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFVPLTVNYAERFSAAGRTSG 139

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           GY +R+    ENE L +R++DR IRP+  K +  ETQV+  +M  D E S   +++ AAS
Sbjct: 140 GYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDAERSTDALAITAAS 199

Query: 136 AALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
           AAL +S +P + PVVG +V  + G  + V+NP  ++  Q  LDL ++GT +AVLM+E   
Sbjct: 200 AALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRLDLVLAGTDEAVLMIEGFC 259

Query: 193 NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           + L+ D +L AI  G       CK +    + +A     + +++  +    ++E ++ ++
Sbjct: 260 DFLTTDEMLRAIEKGQEAVAKACKEIDAWAATVAPQKMMQKLIVQPEG---VDEAVAALV 316

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           +++L+ +  +P K  R   I   +++ V     E   +    +++    I+++ +R V+ 
Sbjct: 317 EDELKQAIVVPIKQERGAMIGAARERAVEALQDE---FQASAVINACGKIESRALRDVIR 373

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
            K  R DGR +  +R I+ + G+L RTHGSSLF RG+TQAI V TLG  +D Q  D +  
Sbjct: 374 TKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDVEA 433

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +   FM+HY F P + GE  R G  SRREIGHG LA RA+ P+LP    FP+  ++ S 
Sbjct: 434 GEDKRFMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCKLEST 493

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------KDGDDF--IILSDIS 480
           ITES+GSSSMATVC  +LAL+DAGVPI + VAGIAMGL+        GD+   I+L+DI 
Sbjct: 494 ITESNGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLILGSEAAGGGDELEPIVLTDIL 553

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAG   GITA QMD+K+ GI+ ++M  AL++A++G +HIL EM K   
Sbjct: 554 GSEDALGDMDFKVAGDKDGITAFQMDIKVEGITIDVMKTALEEAQKGLVHILGEMEKCDP 613

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIAS 597
                  ++ PR+  +A+P      VIG GG+ IR I+E+TGA+ NID   +   V +  
Sbjct: 614 APAGATSKYAPRIASIAVPEKYFGKVIGKGGETIRSIMEKTGAE-NIDVNKEKEMVFVTG 672

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVV-KVMDFGAFVHFCGARDGLVHISQLSTER 656
            + A+++AA  MI  +   PEV KIY+G VV KV++FG FV +    +GLVHIS+L   R
Sbjct: 673 GADADLDAAIRMIEGMIVEPEVGKIYRGCVVKKVVEFGCFVEYLPGLEGLVHISELDVSR 732

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V   SDV  EG  + VK++  D+RGK  LS K V
Sbjct: 733 VPNVSDVTSEGAVMDVKIIAVDNRGKTSLSRKEV 766


>gi|15609920|ref|NP_217299.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Rv]
 gi|15842321|ref|NP_337358.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31793959|ref|NP_856452.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           AF2122/97]
 gi|121638663|ref|YP_978887.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662625|ref|YP_001284148.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Ra]
 gi|148823971|ref|YP_001288725.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis F11]
 gi|167968613|ref|ZP_02550890.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Ra]
 gi|215412596|ref|ZP_03421324.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428215|ref|ZP_03426134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T92]
 gi|215447035|ref|ZP_03433787.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T85]
 gi|219558792|ref|ZP_03537868.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T17]
 gi|224991155|ref|YP_002645844.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798133|ref|YP_003031134.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232881|ref|ZP_04926208.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis C]
 gi|254365434|ref|ZP_04981479.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551842|ref|ZP_05142289.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187800|ref|ZP_05765274.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis CPHL_A]
 gi|289444328|ref|ZP_06434072.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T46]
 gi|289448441|ref|ZP_06438185.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553430|ref|ZP_06442640.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 605]
 gi|289570962|ref|ZP_06451189.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T17]
 gi|289746586|ref|ZP_06505964.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289751440|ref|ZP_06510818.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T92]
 gi|289758910|ref|ZP_06518288.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T85]
 gi|289762955|ref|ZP_06522333.1| guanosine pentaphosphate synthetase + polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|294994124|ref|ZP_06799815.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 210]
 gi|297635394|ref|ZP_06953174.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732392|ref|ZP_06961510.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN R506]
 gi|298526249|ref|ZP_07013658.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|306780966|ref|ZP_07419303.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu002]
 gi|306785594|ref|ZP_07423916.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu003]
 gi|306790189|ref|ZP_07428511.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu004]
 gi|306794273|ref|ZP_07432575.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu005]
 gi|306798691|ref|ZP_07436993.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu006]
 gi|306804546|ref|ZP_07441214.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu008]
 gi|306807414|ref|ZP_07444082.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu007]
 gi|307085479|ref|ZP_07494592.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu012]
 gi|308378098|ref|ZP_07668668.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu009]
 gi|313659724|ref|ZP_07816604.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN V2475]
 gi|81421764|sp|Q7TXW0|PNP_MYCBO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81669114|sp|O33325|PNP_MYCTU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610286|sp|A1KMC6|PNP_MYCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610290|sp|A5U6D6|PNP_MYCTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782730|sp|C1AFP7|PNP_MYCBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2624305|emb|CAA15578.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
           POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882616|gb|AAK47172.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           CDC1551]
 gi|31619553|emb|CAD94991.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
           POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
           bovis AF2122/97]
 gi|121494311|emb|CAL72789.1| Bifunctional protein polyribonucleotide nucleotidyltransferase
           gpsI: guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124601940|gb|EAY60950.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis C]
 gi|134150947|gb|EBA42992.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506777|gb|ABQ74586.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148722498|gb|ABR07123.1| bifunctional protein polyribonucleotide nucleotidyltransferase
           gpsI: guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis F11]
 gi|224774270|dbj|BAH27076.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319636|gb|ACT24239.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417247|gb|EFD14487.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T46]
 gi|289421399|gb|EFD18600.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438062|gb|EFD20555.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 605]
 gi|289544716|gb|EFD48364.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T17]
 gi|289687114|gb|EFD54602.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289692027|gb|EFD59456.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T92]
 gi|289710461|gb|EFD74477.1| guanosine pentaphosphate synthetase + polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|289714474|gb|EFD78486.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T85]
 gi|298496043|gb|EFI31337.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|308326219|gb|EFP15070.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu002]
 gi|308329777|gb|EFP18628.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu003]
 gi|308333383|gb|EFP22234.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu004]
 gi|308337406|gb|EFP26257.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu005]
 gi|308341071|gb|EFP29922.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu006]
 gi|308346145|gb|EFP34996.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu007]
 gi|308348876|gb|EFP37727.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu008]
 gi|308353596|gb|EFP42447.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu009]
 gi|308365003|gb|EFP53854.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu012]
 gi|323718629|gb|EGB27793.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904398|gb|EGE51331.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis W-148]
 gi|328457906|gb|AEB03329.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 4207]
          Length = 752

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230
           ++MVE EA +   ++V           +  G    KP I A+     +LA    K  +P 
Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261

Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           V D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +   
Sbjct: 262 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 319

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+T
Sbjct: 320 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 379

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 380 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 439

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGL
Sbjct: 440 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 499

Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           V D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 500 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 559

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI
Sbjct: 560 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 618

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK  D
Sbjct: 619 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 678

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L + V D
Sbjct: 679 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 737

Query: 692 QNT 694
           +++
Sbjct: 738 EDS 740


>gi|320008201|gb|ADW03051.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 737

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/712 (39%), Positives = 422/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AASA+ +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +  +V D         +  G    KP I+ +        +K AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKTLCKAQSDLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ +D +D   + E +++ ++ +L  +  I  K  R  ++D +K+    K++  F    
Sbjct: 257 FPVFLDYQD--DVLEALTKAVRTELAKALTIAGKQEREAELDRIKEIAGEKLLPAFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISGAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIA
Sbjct: 430 LAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIA 489

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    DG   ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLMPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|227503420|ref|ZP_03933469.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           accolens ATCC 49725]
 gi|227075923|gb|EEI13886.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           accolens ATCC 49725]
          Length = 748

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 291/718 (40%), Positives = 424/718 (59%), Gaps = 44/718 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DG+V  TY   +T++LAT       ++  DFFPLTV+ +ER 
Sbjct: 28  DFGTRTVRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERM 86

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    
Sbjct: 87  YAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYYD 146

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180
           VV++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G
Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206

Query: 181 -------TQD-AVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISK 220
                   +D A++MVE  A     + + D        A+  G    KP I    EA + 
Sbjct: 207 RIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNG 266

Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           LA+  AKE    P+    +D  F+ +E+  S+ ++  L +           + ++ +++ 
Sbjct: 267 LAERTAKETQEFPLFPAYEDDVFAAVEKAASKKLESLLTIPGKQERDEATNEHMEQVEQD 326

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           ++  F+    +    +I + + ++  K+VR  +L    R+DGR    +RD+S +V L+ R
Sbjct: 327 LLPQFADLEEAVASKQIRAAYNEVMKKIVRRKILTDGFRIDGRGLTDIRDLSVEVDLVPR 386

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+P
Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIESKRYMHHYNFPPFSTGETGRVGSP 446

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP
Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVP 506

Query: 455 ISKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           +  PVAGIAMGL    VK  + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ 
Sbjct: 507 LKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLD 566

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++  AL+QA+  R  IL  M++V+ +S  ++    P++  + IP ++I  +IG  
Sbjct: 567 GIPSKVLAQALEQARDARATILETMAEVI-DSPDEMSGLAPKITSVKIPVNKIGELIGPK 625

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628
           GK I  I E TGA V+I+DDGTV I++ +    +AA E + SI +  +P+V + + G VV
Sbjct: 626 GKTINQITEDTGADVSIEDDGTVYISAVTGEAADAAIEKVNSIANPQLPKVGERFLGTVV 685

Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           K + FGAFV     RDGL+HIS L   ER+ K  DVV  GD V V++ D D+RGKI L
Sbjct: 686 KTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVVNVGDKVQVEIADIDNRGKISL 743


>gi|307331543|ref|ZP_07610655.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces violaceusniger Tu
           4113]
 gi|306882814|gb|EFN13888.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces violaceusniger Tu
           4113]
          Length = 752

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 285/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTVSKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E ++   D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHSELEEAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKM--------CAK 227
           A++MVE EA Q +  +V D         +  G    KP I+ + K             A+
Sbjct: 197 AIMMVEAEATQQTIQLVKDGAEAPTEEIVAAGLEASKPFIKVLCKAQADLAAKAAKPTAE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E ++  ++++L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 257 FPIFLDFQD--DILEALTAAVRDELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRALTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALLPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    DG+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGT+ I +      EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGADITIEDDGTIYIGAVDGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+K G  V V++ + D RGK+ L
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL 720


>gi|215404753|ref|ZP_03416934.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 02_1987]
 gi|218754524|ref|ZP_03533320.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis GM 1503]
 gi|260201911|ref|ZP_05769402.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T46]
 gi|308380469|ref|ZP_07669200.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu011]
 gi|308361392|gb|EFP50243.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu011]
          Length = 743

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 13  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 73  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 192

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230
           ++MVE EA +   ++V           +  G    KP I A+     +LA    K  +P 
Sbjct: 193 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 252

Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           V D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +   
Sbjct: 253 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 310

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+T
Sbjct: 311 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 370

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 371 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 430

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGL
Sbjct: 431 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 490

Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           V D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 491 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 550

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI
Sbjct: 551 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 609

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK  D
Sbjct: 610 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 669

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L + V D
Sbjct: 670 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 728

Query: 692 QNT 694
           +++
Sbjct: 729 EDS 731


>gi|332518964|ref|ZP_08395431.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044812|gb|EGI81005.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
           5H-3-7-4]
          Length = 750

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/696 (39%), Positives = 430/696 (61%), Gaps = 25/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +    D  DF PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQAD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE P+  A+V  +NG++++NP R   ++  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECPISEARVGRVNGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE--EMSQMIK 249
            +++SE+ + +AI F H   K    A  KLA+   K+    +++++    E  E++Q I 
Sbjct: 194 MDEISEEEMTEAIKFAHEAIKVQCAAQVKLAEAFGKK----ETREYEPEREDAELAQKIH 249

Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +      +        K+ R     ++K+++ + FS E  +   G +   +   +   VR
Sbjct: 250 DMAYDKVYAVAQAGSAKHERSAAFAEIKEEIKATFSEEELADFGGLVSKYYSKAEKAAVR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + L++ +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +   +D
Sbjct: 310 DLTLNEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSREANQID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P+    PYT+R
Sbjct: 370 MPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVPEDC--PYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482
           +VSEI ES+GSSSMATVC  ++A+MDAGV + KPV+GIAMGL+ D D   + +LSDI GD
Sbjct: 428 VVSEILESNGSSSMATVCAGTMAMMDAGVQLKKPVSGIAMGLISDADSGKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL+++++ +   
Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILDKITETIETP 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597
              + +  P +    IP + I  +IG GGKVI+ + ++T   + I++D     G V+I  
Sbjct: 548 NADVKDHAPTMVSRRIPNEFIGALIGPGGKVIQEMQKETDTTIVINEDPVTEEGIVEILG 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655
                I+A    I ++   P+V  IY+ +V+K++DFGA V +  A   + L+H+S+L+ E
Sbjct: 608 VGRKGIDAVMAKIDALLFKPQVGSIYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWE 667

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           R    SDVV  GD   VK    D R  K K+S K +
Sbjct: 668 RTENVSDVVNMGDVFDVKYFGIDKRTRKEKVSRKAI 703


>gi|229820964|ref|YP_002882490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
 gi|259534112|sp|C5BWR2|PNP_BEUC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229566877|gb|ACQ80728.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 744

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/708 (40%), Positives = 420/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAVLAT  E TVVL+T    +  K+  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAAGAVLATLDEDTVVLSTTAAGKHPKEQFDFFPLTVDVEERQYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF K  +NE QV+  ++    + S  V+
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVETILAIHPDDSYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  +SGLPF GPV G +V  I+G +V  PR  E ++   D+ V+G       A
Sbjct: 138 AINAASASTQISGLPFSGPVGGVRVALIDGTWVGFPRYSEKERAVFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVVL---------DAIIFGHNECKPVIEAISKLAKMCA----KEPIV 231
           + MVE EA   + +++          + +  G    KP I A+ +     A    KE  V
Sbjct: 198 ITMVEAEATDNAWELIKGEGAGAPTEEVVAEGLEAAKPFIRALCEAQAALASRAAKEVQV 257

Query: 232 IDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
                F + E +    + Q + + L  +  I +K  R  ++D++K   V    +      
Sbjct: 258 FPV--FPEYEPDAYDAVEQQVADHLDAALRIADKQERESRLDEIKDAAVGALQAGFDG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ + +  +  K +R  +L    R+DGR  + +R ++A+V +L R HGS+LF RG+TQ
Sbjct: 315 EKELSAAYRALTKKFIRRHILTDSFRIDGRGLKDIRPLTAEVEVLPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   + EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 ILGVTTLNMLKMEQQLDTLSPVSRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+  PVAGIAMGLV
Sbjct: 435 ALVPVLPARDEFPYAIRQVSEALSSNGSTSMGSVCASTLSMLNAGVPLRAPVAGIAMGLV 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 495 SDEVDGETRYATLTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGALSQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ + ++  ++    PRV  + +P D+I  VIG  GK+I  I + TGA
Sbjct: 555 AREARLHILDVMAEAI-DTPDEMAATAPRVITVQVPVDKIGEVIGPKGKMINQIQDDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I ++     EAAR+ I +I +  +PEV + + G VVK   FGAFV    
Sbjct: 614 DISIEDDGTVFIGATDGPSAEAARQAINAIANPHMPEVGERFVGTVVKTTSFGAFVSLTP 673

Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 GKDGLLHISQIRRLVGGKRVENVEDVLGVGQKVQVEIAEIDPRGKLSL 721


>gi|308232239|ref|ZP_07664037.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu001]
 gi|308379315|ref|ZP_07668942.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu010]
 gi|308214573|gb|EFO73972.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu001]
 gi|308357442|gb|EFP46293.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu010]
          Length = 831

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 101 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 160

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 161 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 220

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 221 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 280

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230
           ++MVE EA +   ++V           +  G    KP I A+     +LA    K  +P 
Sbjct: 281 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 340

Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           V D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +   
Sbjct: 341 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 398

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+T
Sbjct: 399 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 458

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 459 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 518

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGL
Sbjct: 519 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 578

Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           V D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 579 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 638

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI
Sbjct: 639 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 697

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK  D
Sbjct: 698 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 757

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L + V D
Sbjct: 758 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 816

Query: 692 QNT 694
           +++
Sbjct: 817 EDS 819


>gi|282866915|ref|ZP_06275947.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces sp. ACTE]
 gi|282558228|gb|EFB63798.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces sp. ACTE]
          Length = 737

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 285/712 (40%), Positives = 421/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+ +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +  +V D         +  G    KP I+A+        +K AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKALCKAQSDLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ +D +D   + E ++  +  +L  +  I  K  R  ++D +K+    K++  F    
Sbjct: 257 FPVFLDYQD--DVLEALTGAVSTELAKALTIAGKQEREAELDRIKEIAAEKLLPAFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISGAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIA
Sbjct: 430 LAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIA 489

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    DG   ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLMPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|260206095|ref|ZP_05773586.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis K85]
 gi|289575481|ref|ZP_06455708.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis K85]
 gi|289539912|gb|EFD44490.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis K85]
          Length = 752

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230
           ++MVE EA +   ++V           +  G    KP I A+     +LA    K  +P 
Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261

Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           V D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +   
Sbjct: 262 V-DFLVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 319

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+T
Sbjct: 320 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 379

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 380 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 439

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGL
Sbjct: 440 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 499

Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           V D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 500 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 559

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI
Sbjct: 560 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 618

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK  D
Sbjct: 619 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 678

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L + V D
Sbjct: 679 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 737

Query: 692 QNT 694
           +++
Sbjct: 738 EDS 740


>gi|187611321|sp|A9WPX4|PNP_RENSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 746

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/711 (39%), Positives = 421/711 (59%), Gaps = 41/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    + T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ A+S +  LSGLPF GP+ G +V  I  Q+V  PR  E ++   ++ V+G       A
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFNMVVAGRVAGDDVA 197

Query: 185 VLMVELEANQLSEDVVLDA---------IIFGHNECKPVIEAISKLA--------KMCAK 227
           ++MVE EA   S +++ +          +  G    KP I+A+ +          K   +
Sbjct: 198 IMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCEAQADLAARAAKPTVE 257

Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            PI +D +D  F  +    +  + E  +++    +K  R    D LK ++VS  SS+   
Sbjct: 258 FPIFLDYQDDIFEAVNAAAAAKLTEVFQIA----DKQERDNASDALKDEVVSSLSSKFDG 313

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E EI + F  +  +VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F RG+
Sbjct: 314 -REKEISAAFRSVTKQVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGE 372

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG LA
Sbjct: 373 TQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 432

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 433 ERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 492

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 493 LVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAAAL 552

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QA+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E T
Sbjct: 553 KQAREARLHILGVLNAAIDVPD-ELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQEDT 611

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGTV I +++    +AAR  I +I +  +PE+ + Y G VVK   FGAFV  
Sbjct: 612 GADISIEDDGTVYIGATNGPSADAARSAINAIANPQIPEIGERYLGTVVKTTTFGAFVSL 671

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
              +DGL+H+++L      +RV    DVV  G  + V++   DDRGK+ LS
Sbjct: 672 TPGKDGLLHVTELRKINDGKRVDNVDDVVSVGQKIQVEITKIDDRGKLSLS 722


>gi|163839428|ref|YP_001623833.1| polynucleotide phosphorylase/polyadenylase [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952904|gb|ABY22419.1| polyribonucleotide nucleotidyltransferase [Renibacterium
           salmoninarum ATCC 33209]
          Length = 778

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/711 (39%), Positives = 421/711 (59%), Gaps = 41/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    + T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 50  FGKRTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 109

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 110 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 169

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ A+S +  LSGLPF GP+ G +V  I  Q+V  PR  E ++   ++ V+G       A
Sbjct: 170 AINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFNMVVAGRVAGDDVA 229

Query: 185 VLMVELEANQLSEDVVLDA---------IIFGHNECKPVIEAISKLA--------KMCAK 227
           ++MVE EA   S +++ +          +  G    KP I+A+ +          K   +
Sbjct: 230 IMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCEAQADLAARAAKPTVE 289

Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            PI +D +D  F  +    +  + E  +++    +K  R    D LK ++VS  SS+   
Sbjct: 290 FPIFLDYQDDIFEAVNAAAAAKLTEVFQIA----DKQERDNASDALKDEVVSSLSSKFDG 345

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E EI + F  +  +VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F RG+
Sbjct: 346 -REKEISAAFRSVTKQVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGE 404

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG LA
Sbjct: 405 TQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 464

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 465 ERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 524

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 525 LVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAAAL 584

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QA+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E T
Sbjct: 585 KQAREARLHILGVLNAAIDVPD-ELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQEDT 643

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGTV I +++    +AAR  I +I +  +PE+ + Y G VVK   FGAFV  
Sbjct: 644 GADISIEDDGTVYIGATNGPSADAARSAINAIANPQIPEIGERYLGTVVKTTTFGAFVSL 703

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
              +DGL+H+++L      +RV    DVV  G  + V++   DDRGK+ LS
Sbjct: 704 TPGKDGLLHVTELRKINDGKRVDNVDDVVSVGQKIQVEITKIDDRGKLSLS 754


>gi|91216373|ref|ZP_01253340.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
           torquis ATCC 700755]
 gi|91185511|gb|EAS71887.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
           torquis ATCC 700755]
          Length = 683

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/677 (41%), Positives = 416/677 (61%), Gaps = 21/677 (3%)

Query: 36  GETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRM 94
           G+T++L TVV   S K+ + DFFPLTV+Y+E+  A G+ PGG+ +RE+RP++ E+L  R+
Sbjct: 2   GDTMLLCTVV--SSYKESKMDFFPLTVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRI 59

Query: 95  IDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV 154
           +DR +RPLF   Y+ ETQV+I +M HD +  P  ++ +AASAA+ LS +PFE  +  A+V
Sbjct: 60  VDRVLRPLFPSDYRTETQVMIQLMSHDEDVMPDALAGLAASAAIQLSDIPFETAISEARV 119

Query: 155 DYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKP 213
             ING++V+NP R    +  +D+ +  + D+V+MVE E  ++SE+ + +AI F H   K 
Sbjct: 120 ARINGEFVINPSRSQLKESDIDMIIGASMDSVMMVEGEMKEISEEEMAEAIQFAHEHIKK 179

Query: 214 VIEAISKLAKMCAKEPI-----VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI 268
            +EA  +LA+   K+P+       D++DF K   +++    +   ++     K  R +  
Sbjct: 180 QVEAQLRLAEAFGKKPVREYAVTEDNEDFEKKIHDLA--YDKIYEIAKGGHSKKDRGEAF 237

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328
             +K + ++ FS E    NE  I   +   +   VR + L + +R+DGR ++ +R I  +
Sbjct: 238 SAVKDEAMALFSEEELEGNEKLIKKYYNKTEKAAVRELTLAEGLRLDGRKTDEIRPIWCE 297

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           V  L   HGS++F RG+TQA+  VTLGT  +   +D  +      F +HYNF P  TGE 
Sbjct: 298 VAYLPSVHGSAIFTRGETQALATVTLGTSREASTIDMPTHQGEEKFYLHYNFPPFCTGEA 357

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
             +   SRREIGHG LA+RA+  ++P++   PYT+RIVSE+ ES+GSSSMATVC  ++A+
Sbjct: 358 YPIRGTSRREIGHGNLAQRALKGMIPESN--PYTVRIVSEVLESNGSSSMATVCAGTMAM 415

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           MDAG+ + KPV+GIAMGL+ DGD   +LSDI GDEDHLG MDFKV GT  GITA QMD+K
Sbjct: 416 MDAGIKMKKPVSGIAMGLISDGDRHAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIK 475

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + G+   I+V ALQQA+ GRLHIL +++  +S     +    P++    IP + I  +IG
Sbjct: 476 VKGLPYEILVKALQQARAGRLHILEKLTDTISLPNENVKAHAPKIITRRIPNEFIGALIG 535

Query: 569 MGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            GGKVI+ + + TG ++ I++D     G V+I  +    I+     I S+T  PE   +Y
Sbjct: 536 PGGKVIQELQKSTGTEIVINEDPVTEEGIVEILGTKQEGIDKVLAKIDSVTFKPEKGSVY 595

Query: 624 KGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           +  VVKV+DFGA V +  A   + L+HIS+L+ ER    +DV+K GD + VK    D R 
Sbjct: 596 EVTVVKVLDFGAVVEYNDAPGNEVLLHISELAWERTENVADVMKLGDVLDVKYFGVDPRT 655

Query: 681 GKIKLSMKVVDQNTGKP 697
            K K+S K + +   +P
Sbjct: 656 KKPKVSRKALLKKPERP 672



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+  E   +     G+ + T GET  LATV    S +      P T   +E+ Y     
Sbjct: 292 RPIWCEVAYLP-SVHGSAIFTRGETQALATVTLGTSREASTIDMP-THQGEEKFYLHYNF 349

Query: 74  PGGYLRRESRP----TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           P  +   E+ P    +  EI    +  R+++ +  +      +++  V++ +  SS  + 
Sbjct: 350 P-PFCTGEAYPIRGTSRREIGHGNLAQRALKGMIPESNPYTVRIVSEVLESNGSSS--MA 406

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING---QYVLNPRL-DEDQ-GSLDLFVSGTQDA 184
           ++ A + A+M +G+  + PV G  +  I+      VL+  L DED  G +D  V+GT D 
Sbjct: 407 TVCAGTMAMMDAGIKMKKPVSGIAMGLISDGDRHAVLSDILGDEDHLGDMDFKVTGTADG 466

Query: 185 VLMVELE 191
           +   +++
Sbjct: 467 ITACQMD 473


>gi|153864819|ref|ZP_01997588.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
 gi|152145686|gb|EDN72412.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
          Length = 416

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/413 (56%), Positives = 305/413 (73%)

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
            S+E   W+E +++ V E ++  +VR+ ++  K R+DGRD+ TVR I+ + G+L RTHGS
Sbjct: 3   MSTETEDWSENQVLQVIEKLEKNIVRSDIIAGKPRIDGRDTRTVRPITIRTGVLPRTHGS 62

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           +LF RG+TQA+VV TLGT  D Q +D+L G  +  F++HYNF P   GEV R+G P RRE
Sbjct: 63  ALFTRGETQALVVTTLGTERDAQIIDALEGEYKEGFLLHYNFPPYCVGEVGRIGTPKRRE 122

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           +GHGRLARR +  V+P +  FPY++R+VSEITES+GSSSMATVCG+SLALMDA VPI  P
Sbjct: 123 LGHGRLARRGVQAVMPTSEVFPYSVRLVSEITESNGSSSMATVCGASLALMDAAVPIKAP 182

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VAGIAMGL+K+ + F++L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM 
Sbjct: 183 VAGIAMGLIKEDEQFVVLTDIMGDEDHLGDMDFKVAGTLEGVTALQMDIKIDGITREIME 242

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL QAK GRLHIL+ M K L++ R ++ E  PR+    I PD+IR VIG GG  IR I 
Sbjct: 243 TALAQAKDGRLHILSVMDKALAKPRSEMSEHAPRIITFKIKPDKIREVIGKGGATIRAIT 302

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           EQTGA V+I+D+G +KIAS  L   E AR  I  IT   EV K+Y+G+VVK+MDFGAFV 
Sbjct: 303 EQTGAMVDINDEGVIKIASVDLIAGEKARRRIEEITSDIEVGKVYEGKVVKLMDFGAFVT 362

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
               +DGL+HISQ+  ERV K SD +KEG+TV VK+L+ D +G+I+LSMK V+
Sbjct: 363 ILPGKDGLLHISQICEERVEKVSDKLKEGETVRVKVLEVDKQGRIRLSMKAVN 415



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 22/192 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66
           RP+ + TG + R + G+ L T GET  +V+ T+  +R  +     +G+      ++Y   
Sbjct: 47  RPITIRTGVLPR-THGSALFTRGETQALVVTTLGTERDAQIIDALEGEYKEGFLLHYNFP 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLES 124
            Y VG++      R   P   E+   R+  R ++ +   S+ +    +++  + + +  S
Sbjct: 106 PYCVGEVG-----RIGTPKRRELGHGRLARRGVQAVMPTSEVFPYSVRLVSEITESNGSS 160

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL--DEDQ-GSLDLFVS 179
           S  + ++  AS ALM + +P + PV G  +  I  + Q+V+   +  DED  G +D  V+
Sbjct: 161 S--MATVCGASLALMDAAVPIKAPVAGIAMGLIKEDEQFVVLTDIMGDEDHLGDMDFKVA 218

Query: 180 GTQDAVLMVELE 191
           GT + V  ++++
Sbjct: 219 GTLEGVTALQMD 230


>gi|289754889|ref|ZP_06514267.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289695476|gb|EFD62905.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis EAS054]
          Length = 752

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    ++E Q+++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVTILSLDPGDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230
           ++MVE EA +   ++V           +  G    KP I A+     +LA    K  +P 
Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261

Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           V D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +   
Sbjct: 262 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 319

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+T
Sbjct: 320 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 379

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 380 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 439

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGL
Sbjct: 440 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 499

Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           V D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 500 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 559

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI
Sbjct: 560 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 618

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK  D
Sbjct: 619 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 678

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L + V D
Sbjct: 679 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 737

Query: 692 QNT 694
           +++
Sbjct: 738 EDS 740


>gi|29829065|ref|NP_823699.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           avermitilis MA-4680]
 gi|81720032|sp|Q82K80|PNP_STRAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29606171|dbj|BAC70234.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 738

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/712 (39%), Positives = 423/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKENLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRALEDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227
           A++MVE EA + +  +V         + +  G +  KP I+ + K              +
Sbjct: 197 AIMMVEAEATEKTIQLVAGGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ +D +D   + E ++  +K +L  +  I  K  R  ++D +K+    K++  F    
Sbjct: 257 FPVFLDYQD--DVLEALTAAVKSELSQALTIAGKQDREAELDRVKEIAAEKLLPQFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I +   ++ EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGAEITIEDDGTIYIGAQVGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|239944720|ref|ZP_04696657.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
          Length = 737

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/708 (39%), Positives = 417/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  VM  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AAS +  L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228
           A++MVE EA + +  +V D         +  G    KP I+ + K    LA   AK    
Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEGD 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + + +++ +  +L+ +  I  K  R  ++D +K+        E     
Sbjct: 257 FPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL+
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|291448178|ref|ZP_06587568.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351125|gb|EFE78029.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
          Length = 742

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 283/708 (39%), Positives = 417/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  VM  + +    VV
Sbjct: 82  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AAS +  L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 142 AINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 201

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228
           A++MVE EA + +  +V D         +  G    KP I+ + K    LA   AK    
Sbjct: 202 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEGD 261

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + + +++ +  +L+ +  I  K  R  ++D +K+        E     
Sbjct: 262 FPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG-R 318

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 319 EKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 378

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 379 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 438

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL+
Sbjct: 439 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLI 498

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 499 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALKQ 558

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 559 ARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 617

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV    
Sbjct: 618 DITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 677

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 678 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 725


>gi|302542113|ref|ZP_07294455.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459731|gb|EFL22824.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 743

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/712 (40%), Positives = 425/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E ++   D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHSELEEAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA   +  +V D         +  G    KP I+ +        +K AK   +
Sbjct: 197 AIMMVEAEATTQTIQLVKDGAEAPTEEIVAAGLEAAKPYIKVLCKAQSDLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E ++  ++++L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 257 FPIFLDYQD--DVLEALTAAVRDELSQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPETRRRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALLPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    DG+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLAVGSKVQVEIAEIDQRGKLSL 720


>gi|215431723|ref|ZP_03429642.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis EAS054]
          Length = 743

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 287/723 (39%), Positives = 425/723 (58%), Gaps = 43/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 13  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDFFPLTVDVEERMYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    ++E Q+++ ++  D      V+
Sbjct: 73  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVTILSLDPGDLYDVL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 192

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMCAK--EPI 230
           ++MVE EA +   ++V           +  G    KP I A+     +LA    K  +P 
Sbjct: 193 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 252

Query: 231 VIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           V D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +   
Sbjct: 253 V-DFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG- 310

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+T
Sbjct: 311 REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGET 370

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 371 QILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 430

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGL
Sbjct: 431 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 490

Query: 467 VKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           V D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 491 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 550

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI
Sbjct: 551 QVLAGALEQAKDARLTILEVMAEAIDRPD-EMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 609

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK  D
Sbjct: 610 NAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTD 669

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L + V D
Sbjct: 670 FGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLIL-VAD 728

Query: 692 QNT 694
           +++
Sbjct: 729 EDS 731


>gi|187610336|sp|A0PQE7|PNP_MYCUA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 762

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/719 (39%), Positives = 423/719 (58%), Gaps = 46/719 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+     E ++L+     ++ K+  +FFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      VV
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AASA+  L+GLPF GPV G +V  I+GQ+V  P +++ ++   D+ V+G        
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 201

Query: 181 -TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLA---- 222
            T D A++MVE EA     ++V           +  G    KP I A+     +LA    
Sbjct: 202 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 261

Query: 223 ---KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
              K  A+ P+  +  D   +   +S +  + L  +  I  K  R ++ +++K +++   
Sbjct: 262 ATVKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 319

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  +    E EI + F  +  K+VR  ++    R+DGR    +R +SA+V L+ R HGS+
Sbjct: 320 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGVTDIRALSAEVALVPRAHGSA 378

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 379 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 438

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PV
Sbjct: 439 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 498

Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           AGIAMGLV D  +        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 499 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 558

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  RL IL  M++ + ++  ++  + PRV  + +P D+I  VIG  G
Sbjct: 559 IPSQVLAGALAQAKDARLTILEVMAEAI-DTPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 617

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           KVI  I E+T A+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK
Sbjct: 618 KVINSITEETRAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 677

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L +
Sbjct: 678 TTDFGAFVALLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 736


>gi|239991184|ref|ZP_04711848.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 11379]
          Length = 737

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 283/708 (39%), Positives = 417/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  VM  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETVMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AAS +  L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228
           A++MVE EA + +  +V D         +  G    KP I+ + K    LA   AK    
Sbjct: 197 AIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEGD 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + + +++ +  +L+ +  I  K  R  ++D +K+        E     
Sbjct: 257 FPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL+
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|325285569|ref|YP_004261359.1| polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
           7489]
 gi|324321023|gb|ADY28488.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
           7489]
          Length = 747

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/697 (39%), Positives = 435/697 (62%), Gaps = 27/697 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G  ++L T+V +    D  DF PLTV+Y+E+  + G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGNCMLLCTLVSNYKQSD-VDFLPLTVDYREKFASAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD    P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS +PFE P+  A+V  ING++++NP R   ++  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDVPFETPISEARVGRINGEFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIK 249
             ++SE+ + +AI F H   K    A  KLA+   K+    +++++   + +E++++ I 
Sbjct: 194 MLEISEEEMAEAIKFAHEAIKVQCAAQVKLAEAFGKK----ETREYEPEREDEDLAKKIY 249

Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVV 303
           +      +        K+ R     ++K+++ + FS E  + + G++VS  +   +   +
Sbjct: 250 DMAYDKVYAVAKAGSSKHERSTAFGEIKEEIKATFSEEELA-DYGDLVSKYYAKAEKAAI 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + LD+ +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +   +
Sbjct: 309 RNLTLDEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQI 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT+
Sbjct: 369 DMPSYEGEERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMVP--ADCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481
           R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ D +   + +LSDI G
Sbjct: 427 RVVSEVLESNGSSSMATVCAGTMALMDAGVQLIKPVSGIAMGLISDAETGKYAVLSDILG 486

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT+ GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL +++  +S 
Sbjct: 487 DEDHLGDMDFKVTGTEDGITACQMDIKVKGLSYEILVNALKQAREGRLHILGKLTDTISA 546

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
               +   +P++    IP + I  +IG GGKVI+ + ++TG  + I++D     G V+I 
Sbjct: 547 PASDVKSHSPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPETEEGVVEIL 606

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLST 654
            +    I++    I S+   PE   +Y+ +V+K++DFGA V +  A   + L+H+S+L+ 
Sbjct: 607 GTGQDGIDSVLAKIDSLLFKPEKGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAW 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           ER    +DVV  GD   VK    D R  K K+S K +
Sbjct: 667 ERTENVTDVVNMGDVFDVKYFGVDPRTRKEKVSRKAL 703


>gi|118617705|ref|YP_906037.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium ulcerans
           Agy99]
 gi|118569815|gb|ABL04566.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium ulcerans Agy99]
          Length = 753

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/719 (39%), Positives = 423/719 (58%), Gaps = 46/719 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+     E ++L+     ++ K+  +FFPLTV+ +ER YA
Sbjct: 13  FGTRTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNFFPLTVDVEERMYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      VV
Sbjct: 73  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AASA+  L+GLPF GPV G +V  I+GQ+V  P +++ ++   D+ V+G        
Sbjct: 133 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 192

Query: 181 -TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLA---- 222
            T D A++MVE EA     ++V           +  G    KP I A+     +LA    
Sbjct: 193 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 252

Query: 223 ---KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
              K  A+ P+  +  D   +   +S +  + L  +  I  K  R ++ +++K +++   
Sbjct: 253 ATVKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 310

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  +    E EI + F  +  K+VR  ++    R+DGR    +R +SA+V L+ R HGS+
Sbjct: 311 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGVTDIRALSAEVALVPRAHGSA 369

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 370 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 429

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PV
Sbjct: 430 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 489

Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           AGIAMGLV D  +        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 490 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 549

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  RL IL  M++ + ++  ++  + PRV  + +P D+I  VIG  G
Sbjct: 550 IPSQVLAGALAQAKDARLTILEVMAEAI-DTPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 608

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           KVI  I E+T A+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK
Sbjct: 609 KVINSITEETRAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 668

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L +
Sbjct: 669 TTDFGAFVALLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 727


>gi|239982654|ref|ZP_04705178.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
 gi|291454495|ref|ZP_06593885.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
 gi|291357444|gb|EFE84346.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
          Length = 735

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 286/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALINGQWVGFPTHTELEDAVFDMVVAGRVLDDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +  +V D         +  G    KP I+A+        +K AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVKDGAAAPTEEVVAAGLEAAKPFIKALCKAQSELAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E +   ++ +L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 257 FPIFLDYQD--DVLEALKAAVESELAQALTIGGKQEREAELDRVKAVAAEKLLPQFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +  ++VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRALTKELVRRRVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    DG+  ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|262202098|ref|YP_003273306.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
           43247]
 gi|262085445|gb|ACY21413.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
           43247]
          Length = 759

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 293/719 (40%), Positives = 417/719 (57%), Gaps = 52/719 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ G+V A    E ++L+T    +  K+  DFFPLTV+ +ER YA
Sbjct: 29  FGTRTIRFETGRLALQAAGSVTAYLDDENMLLSTTAASKHPKEHFDFFPLTVDVEERMYA 88

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  +      VV
Sbjct: 89  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPNDLYDVV 148

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDL-----F 177
           ++ AASA+  L+GLPF GPV G +V  I       GQ+V  P +++ +G+  D+      
Sbjct: 149 AINAASASTQLAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVVAGRI 208

Query: 178 VSGTQDA----VLMVELEANQLSEDVV-------LDAIIF-GHNECKPVI----EAISKL 221
           VSG  DA    ++MVE EA     +++        +AI+  G    KP I    EA   L
Sbjct: 209 VSGEGDAADVAIMMVEAEATDKVLEIIAGGAQAPTEAIVAEGLEAAKPFIARLCEAQKSL 268

Query: 222 AKMCAKE--------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273
           A   AKE        P   D+ D       +    K+ L     IP K  R ++ D+LK 
Sbjct: 269 AAAAAKETGEFPLFPPYASDAYD------AVEAAAKDRLSEILTIPGKQERDEKTDELKD 322

Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
            +++    E     E EI + +  +  K+VR  +L    R+DGR    +R +SA+V ++ 
Sbjct: 323 DILAQLG-EQFEGREKEIGAAYRSVTKKLVRQRILTDHFRIDGRGITDIRSLSAEVAVIP 381

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393
           R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+
Sbjct: 382 RAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGS 441

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
           P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGV
Sbjct: 442 PKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGV 501

Query: 454 PISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           P+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+
Sbjct: 502 PLKAPVAGIAMGLVSDTVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKL 561

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI   ++  AL QAK  RL IL+ M++ + E   ++  + PR+  + IP D+I  +IG 
Sbjct: 562 DGIPSQVLAGALSQAKDARLTILDVMAEAIDEPD-EMSPYAPRITTVKIPMDKIGELIGP 620

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQV 627
            GK I GI E TGA ++I+DDGTV + ++     +AA + I +I +  +P+V + + G +
Sbjct: 621 KGKTINGITEDTGANISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPKVGERFLGTI 680

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           VK   FGAFV     RDGLVHIS+L   +R+ K  DVV  G  + V++ D DDRGKI L
Sbjct: 681 VKTTAFGAFVSLLPGRDGLVHISKLGKGKRINKVEDVVNVGSKLRVEIADIDDRGKISL 739


>gi|313149393|ref|ZP_07811586.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           3_1_12]
 gi|313138160|gb|EFR55520.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           3_1_12]
          Length = 711

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/652 (40%), Positives = 405/652 (62%), Gaps = 25/652 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 69  VKTIEL-GDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 127

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 128 KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 187

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP  D+ ++  +D+ V+ T 
Sbjct: 188 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKADMDIMVAATY 247

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           + ++MVE E +++SE  +L+A+   H   K   +A  +L +M  K      +       E
Sbjct: 248 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK------TVKREYCHE 301

Query: 243 EMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           E  + +++ +  +C+             K+ R    D ++ +  + FS E        I 
Sbjct: 302 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 361

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 362 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 421

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 422 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKKM 481

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P+   +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 482 IPE--DYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 539

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 540 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 599

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           IL ++ + ++E R +L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 600 ILGKIQETIAEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 659

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           D+ G ++I+ ++   I+ A  +I+ I  VPE+ ++YKG+V  +M +GAFV F
Sbjct: 660 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEF 711


>gi|255011565|ref|ZP_05283691.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           3_1_12]
          Length = 648

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/652 (40%), Positives = 405/652 (62%), Gaps = 25/652 (3%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIEL-GDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +   D  
Sbjct: 65  KEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFSADGV 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP  D+ ++  +D+ V+ T 
Sbjct: 125 DMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKADMDIMVAATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           + ++MVE E +++SE  +L+A+   H   K   +A  +L +M  K      +       E
Sbjct: 185 ENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK------TVKREYCHE 238

Query: 243 EMSQMIKEDLRVSCFIP----------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           E  + +++ +  +C+             K+ R    D ++ +  + FS E        I 
Sbjct: 239 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKKM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P+   +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IPE--DYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---I 587
           IL ++ + ++E R +L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA +    I
Sbjct: 537 ILGKIQETIAEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           D+ G ++I+ ++   I+ A  +I+ I  VPE+ ++YKG+V  +M +GAFV F
Sbjct: 597 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEF 648


>gi|254495070|ref|ZP_05107994.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
 gi|85819420|gb|EAQ40577.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
          Length = 746

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/694 (39%), Positives = 424/694 (61%), Gaps = 23/694 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + LETG++A+Q+ G+V+   G+ ++L TVV +   KD  DF PLTV+Y+E+  A G+
Sbjct: 15  GRTISLETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQMMSHDDDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS LPFE P+   +V  +NG++++NP R    +  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDLPFECPISEVRVGRVNGEFIINPTRAQLAEADIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMS 245
            ++ SE+ + +AI F H   K    A   LA+   K+    ++++++       LE+++ 
Sbjct: 194 MDECSEEEMAEAIKFAHEAIKVQCAAQVALAEAFGKK----ETREYTPETNDEDLEKKIH 249

Query: 246 QMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            ++ +    ++     K+ R     ++K+++ + FS E  +     I       Q   +R
Sbjct: 250 DLVYDKTYEIAKAGSAKHERSAAFSEIKEEVKNSFSEEEQAEYGNLISKYVAKAQKNAIR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + L + +R+DGR +  +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +   +D
Sbjct: 310 DLTLKEGLRLDGRKTTDIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT+R
Sbjct: 370 MPSYEGEETFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMIP--ADCPYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ DG +  +LSDI GDED
Sbjct: 428 VVSEVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDGTNHAVLSDILGDED 487

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  +     
Sbjct: 488 HLGDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILGKLTDTIETPNS 547

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSS 599
            +    P++    IP D I   IG GGK I+ + ++T   + I +D     G ++I  + 
Sbjct: 548 DVKAHAPKMITRRIPNDLIGAFIGPGGKHIQELQKETETTIVITEDPVTEEGIIEILGTK 607

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERV 657
            A ++A    I S+   PE   +Y+ +V+K++DFGA V +  A   + L+H+S+L+ ER 
Sbjct: 608 PAGMDAVITKIESMLFKPEKGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWERT 667

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
              +DVV  GD + VK    D R  K K+S K +
Sbjct: 668 DNVTDVVNLGDVLDVKYFGIDPRTRKEKVSRKAL 701


>gi|256824776|ref|YP_003148736.1| polynucleotide phosphorylase/polyadenylase [Kytococcus sedentarius
           DSM 20547]
 gi|256688169|gb|ACV05971.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Kytococcus sedentarius DSM 20547]
          Length = 842

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 287/725 (39%), Positives = 421/725 (58%), Gaps = 46/725 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE------TVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +  R ++ ETGR+A+Q+ G+V A   E      T+VL+T    +  KD  DFFPLTV+ +
Sbjct: 18  YGTRTIRFETGRLAQQAAGSVAAYLVEDDIDDATMVLSTTTAGKEPKDHFDFFPLTVDVE 77

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG + RRE RP  + IL  R+IDR +RP F+K  +NE QV++ V+ H  + 
Sbjct: 78  ERMYAAGRIPGSFFRREGRPGTDAILTCRLIDRPLRPTFTKGLRNEVQVVVTVLAHHPDH 137

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG--T 181
              V+++ AASA+  +SGLPF GP+ G ++  I+GQ+V  P   D  + + D+ V+G  T
Sbjct: 138 QYDVLAINAASASTQISGLPFSGPIGGVRISLIDGQWVAFPNFSDIARSTFDMVVAGRLT 197

Query: 182 QD---AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            D   A++MVE E+ + +             E+VV   +       + + EA + L    
Sbjct: 198 DDGDVAIMMVEAESTESTWALVNDEGKTAPTEEVVSQGLEASKVFIRALCEAQASLHAAA 257

Query: 226 AKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
            KE    P  +D +D  +  +E    +   E L ++    E+  R  +I D  K  ++  
Sbjct: 258 GKEVQEFPTFLDFQDDAYQAVESAAEKNTAEALTIAG-KQEREGRLDEIKDSLKADLAGA 316

Query: 280 SSEHSSWNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
             E      G   E+ + F+ +Q K++R  +L   VR+DGR  + +R +SA+V  L R H
Sbjct: 317 DEESGKPFAGRAKEVSAAFKALQKKLIRERILRDGVRIDGRGPKDIRALSAEVQALPRVH 376

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS++F RG+TQ + V TL     EQ +D L+   R  +M +YNF P +TGE  R+G+P R
Sbjct: 377 GSAIFERGETQIMGVTTLNMLRMEQQLDGLNPVTRKRYMHNYNFPPYSTGETGRVGSPKR 436

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+ 
Sbjct: 437 REIGHGALAERAILPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLK 496

Query: 457 KPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV      G  +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI
Sbjct: 497 APVAGIAMGLVSAQVDGGTRYQALTDILGAEDAFGDMDFKVAGTKDFVTAIQLDTKLDGI 556

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
               +  AL QA+  RLHIL+ MS+ + ++  ++    PRV  + +P D+I  VIG  GK
Sbjct: 557 PAEELSKALTQAREARLHILDVMSQAI-DAPDEMSPNAPRVIAVKVPVDKIGEVIGPKGK 615

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630
           +I  I E TGA ++I+DDGTV I ++     EAAR  + +I +  +PE+ + + G VVK 
Sbjct: 616 MINQIQEDTGADISIEDDGTVYIGATDGPSAEAARSAVNAIANPQMPEIGERFLGTVVKT 675

Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
             FGAF+     +DGL+HIS++      +R+    DV+  GD V V+L + D RGK+ L 
Sbjct: 676 TTFGAFISLLPGKDGLLHISEIRKLVGGKRIDAVEDVLNVGDKVQVELKEIDQRGKLSLG 735

Query: 687 MKVVD 691
             V +
Sbjct: 736 AVVAE 740


>gi|32141272|ref|NP_733673.1| polynucleotide phosphorylase/polyadenylase [Streptomyces coelicolor
           A3(2)]
 gi|256784838|ref|ZP_05523269.1| polynucleotide phosphorylase/polyadenylase [Streptomyces lividans
           TK24]
 gi|289768731|ref|ZP_06528109.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
           TK24]
 gi|81445833|sp|Q8CJQ6|PNP_STRCO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24413893|emb|CAD55364.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces coelicolor A3(2)]
 gi|289698930|gb|EFD66359.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
           TK24]
          Length = 739

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/718 (39%), Positives = 423/718 (58%), Gaps = 38/718 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           A++MVE EA   +        E    + +  G +  KP I+ + +          K   +
Sbjct: 197 AIMMVEAEATDKTIKLVEGGAEAPTEEVVAAGLDAAKPFIKVLCRAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDFQD--DVLEALTGAVKPELTQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I ++  ++ EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAAQGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L + V++   G
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL-IPVIEGEAG 729


>gi|254382116|ref|ZP_04997478.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
 gi|194341023|gb|EDX21989.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
          Length = 745

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 288/712 (40%), Positives = 420/712 (58%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 82  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 142 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 201

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------- 228
           A++MVE EA + +        E    + +  G +  KP I+ + K     A +       
Sbjct: 202 AIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLDAAKPFIKVLCKAQADLAAKAAKPEGE 261

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ +D +D   + E ++  +K DL  +  I  K  R  ++D +K+    K++  F    
Sbjct: 262 FPVFLDYQD--DVYEALAAAVKGDLSQALTIAGKQDREAELDRVKEIAAEKLLPAFEG-- 317

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 318 ---REKEISAAYRSLTKALVRERVIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFER 374

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 375 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 435 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 494

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 495 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++   +  F PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 555 ALKQARDARLHILDVMMEAI-DTPDAMSPFAPRIITVKIPVDKIGEVIGPKGKMINQIQE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I +I +  +PEV + Y G VVK   FGAFV
Sbjct: 614 DTGAEITIEDDGTIYIGAADGPAAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFV 673

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 674 SLMPGKDGLLHISQIRKLAGGKRVENVEDVVAVGTKVQVEIAEIDSRGKLSL 725


>gi|297191697|ref|ZP_06909095.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721446|gb|EDY65354.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 738

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 287/722 (39%), Positives = 426/722 (59%), Gaps = 46/722 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + + ++V         + +  G    KP I+ +        +K AK   +
Sbjct: 197 AIMMVEAEATEKTIELVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ +D +D   + E ++  +K +L  +  I  K  R  ++D +K+    K++  F    
Sbjct: 257 FPVFLDYQD--DVLEALTAAVKSELAQALTIAGKQERETELDRIKELAAEKLLPAFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISGAYRALTKKLVRERIIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+ +  D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISEQIDGETHYVALTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L + VV+  
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLAVGSKVQVEIAEIDSRGKLSL-IPVVEGE 727

Query: 694 TG 695
            G
Sbjct: 728 EG 729


>gi|297156777|gb|ADI06489.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           bingchenggensis BCW-1]
          Length = 750

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 286/722 (39%), Positives = 428/722 (59%), Gaps = 46/722 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIRGQWVAFPTHSELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA   +  +V D         +  G    KP I+ +        +K AK   +
Sbjct: 197 AIMMVEAEATDKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E ++  ++++L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 257 FPIFLDYQD--DVLEALTAAVRDELAQALTIAGKQERETELDRVKGLAAEKLLPQFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALLPVLPSREDFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLRAPVAGIA 489

Query: 464 MGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    DG+  ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMNEAIDVPD-EMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                +DGL+HISQ+      +RV    DV+K G  V V++ + D RGK+ L + V++  
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL-IPVIEDE 727

Query: 694 TG 695
            G
Sbjct: 728 EG 729


>gi|305680822|ref|ZP_07403629.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305659027|gb|EFM48527.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 758

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 294/730 (40%), Positives = 426/730 (58%), Gaps = 59/730 (8%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V     E T++L+TV   +  ++G DFFPLTV+ +ER Y
Sbjct: 31  DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMY 90

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+  D +    V
Sbjct: 91  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMYDV 150

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG- 180
           V++  ASAA  LSGLP  GPV G ++  I       GQ+V  P     ++   +L V+G 
Sbjct: 151 VAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVAGR 210

Query: 181 -----------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIE- 216
                         A++MVE  A +             +E+VV +    G    KPVIE 
Sbjct: 211 IVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAE----GLEAAKPVIEL 266

Query: 217 ---AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVR----C 265
              A   LA   AKEP   +   F    + + Q ++    + LR    I +K  R     
Sbjct: 267 LCLAQRGLADRVAKEPQ--EFPLFPPYSDNIYQAVERKATKKLRDLLTIKDKQERDDATN 324

Query: 266 KQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
             ++ +   ++  F+ +    + E EI + +  +  K+VR ++L +  R+DGR    +RD
Sbjct: 325 AYLEQVMDGLIGKFAEDLGEADAEKEIRAAYSAVMKKIVRHMILTEHFRIDGRGVTDIRD 384

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +  +V L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+ T    ++ HYNF P +
Sbjct: 385 LGVEVDLIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTTKRYIHHYNFPPYS 444

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
           TGE  R+G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S
Sbjct: 445 TGETGRVGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCAS 504

Query: 445 SLALMDAGVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           +L+L +AGVP+  PVAGIAMGLV D     + ++ L+DI G ED  G MDFKVAGT   I
Sbjct: 505 TLSLYNAGVPLKAPVAGIAMGLVSDVVNGKERYVALTDILGAEDAFGDMDFKVAGTADFI 564

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+Q+D K+ GI   ++  AL QA+  RL IL+ M++V+     ++ +F PR+  + +P 
Sbjct: 565 TALQLDTKLDGIPSKVLADALAQARDARLTILDTMAEVIDIPD-EMSQFAPRITSVKVPV 623

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618
            +I  VIG  GK I  I E+TGA+V+I++DGTV I+++S    +AA E I +I +  +P+
Sbjct: 624 SKIGEVIGPKGKTINQITEETGAEVSIEEDGTVYISATSGEAADAAIEKINAIANPQLPK 683

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDF 677
           V + + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  GD + V++LD 
Sbjct: 684 VGERFLGSVVKTTPFGAFVSLLPGRDGLVHISKLGGGKRVEKVEDVVNVGDKIEVEILDI 743

Query: 678 DDRGKIKLSM 687
           D+RGKI L +
Sbjct: 744 DNRGKISLGL 753


>gi|158339001|ref|YP_001520178.1| polynucleotide phosphorylase/polyadenylase [Acaryochloris marina
           MBIC11017]
 gi|158309242|gb|ABW30859.1| polyribonucleotide nucleotidyltransferase [Acaryochloris marina
           MBIC11017]
          Length = 646

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/629 (40%), Positives = 390/629 (62%), Gaps = 17/629 (2%)

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           +PGG+LRRE RP E   L  R+IDR +RPLF    +++ Q++   +  D +  P V+++ 
Sbjct: 1   MPGGFLRREGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDVLAVT 60

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS A +L+ +PF+GP+   +V  +   +++NP  +E  +G LDL V+G+ D V+MVE  
Sbjct: 61  GASVATLLAKIPFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLVVAGSPDGVIMVEAG 120

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQ 246
           AN+++E  +++AI FG+     +I+A  +L      E +       D    + ++E ++ 
Sbjct: 121 ANEVAEQDMIEAIDFGYEVVCDLIKAQKELIAELGIEQVEEAAPETDPTLENFVQERVTD 180

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVSVFEDI 298
            +K+ L  + F  +K VR   +D++K+ +         +         N   I  VF+ I
Sbjct: 181 PVKDVL--ARFEKDKNVRDAALDEIKESVKVAIDELPETDPVQVAAVENPKAIGKVFKSI 238

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTR 357
              ++R  +++ KVR+DGR  + VR IS  VG+L QR HGS LF RG TQ + + TLGT 
Sbjct: 239 TKTLMRRQVVEDKVRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTP 298

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  ++ HYNF P + GE   M +P RRE+GHG LA RA+ P+LP   
Sbjct: 299 GDAQEMDDLHPDSQKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALLPMLPSKE 358

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY LR+VSE+  S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+G++  +L+
Sbjct: 359 EFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLT 418

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKVAGT  GITA+QMDMKI G+S  ++  A+ QAK  RLHIL++M  
Sbjct: 419 DIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLSMKVIAEAIHQAKPARLHILDKMLA 478

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  +  + PR+  + I P+QI  +IG GGK I+GI E+TGAK++I+DDG V I++
Sbjct: 479 TIDSPRETMSPYAPRLLTIKIDPEQIGMIIGPGGKTIKGITEETGAKIDIEDDGRVTISA 538

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                   AR++I  +T       ++ G+V +++  GAFV    +++G++HISQL+  RV
Sbjct: 539 VDEKAASRARQIIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRV 598

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            K  D V  GD V VK+ + D+RG+I L+
Sbjct: 599 GKVEDEVTVGDEVVVKIRELDNRGRINLT 627


>gi|225021179|ref|ZP_03710371.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946086|gb|EEG27295.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 758

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 294/730 (40%), Positives = 426/730 (58%), Gaps = 59/730 (8%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V     E T++L+TV   +  ++G DFFPLTV+ +ER Y
Sbjct: 31  DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMY 90

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+  D +    V
Sbjct: 91  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMYDV 150

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG- 180
           V++  ASAA  LSGLP  GPV G ++  I       GQ+V  P     ++   +L V+G 
Sbjct: 151 VAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVAGR 210

Query: 181 -----------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIE- 216
                         A++MVE  A +             +E+VV +    G    KPVIE 
Sbjct: 211 IVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAE----GLEAAKPVIEL 266

Query: 217 ---AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVR----C 265
              A   LA   AKEP   +   F    + + Q ++    + LR    I +K  R     
Sbjct: 267 LCLAQRGLADRVAKEPQ--EFPLFPPYSDNIYQAVERKATKKLRDLLTIKDKQERDDATN 324

Query: 266 KQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
             ++ +   ++  F+ +    + E EI + +  +  K+VR ++L +  R+DGR    +RD
Sbjct: 325 GYLEQVMDGLIGKFAEDLGEADAEKEIRAAYSAVMKKIVRHMILTEHFRIDGRGVTDIRD 384

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +  +V L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+ T    ++ HYNF P +
Sbjct: 385 LGVEVDLIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTTKRYIHHYNFPPYS 444

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
           TGE  R+G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S
Sbjct: 445 TGETGRVGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCAS 504

Query: 445 SLALMDAGVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           +L+L +AGVP+  PVAGIAMGLV D     + ++ L+DI G ED  G MDFKVAGT   I
Sbjct: 505 TLSLYNAGVPLKAPVAGIAMGLVSDVVNGKERYVALTDILGAEDAFGDMDFKVAGTADFI 564

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+Q+D K+ GI   ++  AL QA+  RL IL+ M++V+     ++ +F PR+  + +P 
Sbjct: 565 TALQLDTKLDGIPSKVLADALAQARDARLTILDTMAEVIDIPD-EMSQFAPRITSVKVPV 623

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618
            +I  VIG  GK I  I E+TGA+V+I++DGTV I+++S    +AA E I +I +  +P+
Sbjct: 624 SKIGEVIGPKGKTINQITEETGAEVSIEEDGTVYISATSGEAADAAIEKINAIANPQLPK 683

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDF 677
           V + + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  GD + V++LD 
Sbjct: 684 VGERFLGSVVKTTPFGAFVSLLPGRDGLVHISKLGGGKRVEKVEDVVNVGDKIEVEILDI 743

Query: 678 DDRGKIKLSM 687
           D+RGKI L +
Sbjct: 744 DNRGKISLGL 753


>gi|323191874|gb|EFZ77122.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
          Length = 499

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/486 (49%), Positives = 331/486 (68%), Gaps = 10/486 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 18  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA----LN 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 314 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 374 VLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 433

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI G
Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 493

Query: 482 DEDHLG 487
           DEDHLG
Sbjct: 494 DEDHLG 499


>gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
 gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
          Length = 719

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/705 (39%), Positives = 421/705 (59%), Gaps = 82/705 (11%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE  G     +  ++A+Q+ GAVL   G++VVLA V  +    + +DF PLTV Y E+ Y
Sbjct: 5   IEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREEKPVE-EDFLPLTVQYIEKAY 63

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V
Sbjct: 64  AAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDLQV 123

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +S+ AAS AL LS +P + PV G ++  I  ++VLNP  +E + S LDL+V+G +D +LM
Sbjct: 124 MSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDELLM 183

Query: 188 VELEA---------------------------NQLSEDVVLDA-------IIFGHNECKP 213
           +E+ A                           N+LSED +L+A       I+ G N  + 
Sbjct: 184 IEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNAYEE 243

Query: 214 VIEAISKLAKMCAKEPI-------VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                 K + +  K+ I        I++    ++ + ++QM K +            R  
Sbjct: 244 AFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIIQAINQMAKSE------------RAS 291

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
           +++ + +K++++ S+  + W+E  I++    ++ K+VR+ +L+ K R DGR+   VR I+
Sbjct: 292 ELNKIAEKILNFESA--TKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIA 349

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLP 382
            +  +L   HGS LF RG TQA+VV TLG+  D Q VD L  T++N     FM++YNF  
Sbjct: 350 IETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVL--TEKNPINERFMVNYNFPG 407

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            + GE S + AP RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVC
Sbjct: 408 FSVGEASPIKAPGRRELGHGNLAKRALYPSIDEN--YPYIIRLVSEILESNGSSSMATVC 465

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           G SLAL  AGVP  K VAG+AMGL+ +GD + IL+DI G EDH G MDFKVAG+  GITA
Sbjct: 466 GGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITA 525

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +QMD+K+GGI + I+  AL QAK GR+HILN M + L E  +   E  P++E+  + P +
Sbjct: 526 LQMDIKLGGIDQKILKEALYQAKEGRIHILNIMEEALKEIVVN-EEVLPKLELFNVDPSK 584

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           I ++IG  GK I+ I+E+ G  +++D + G VKIA +   +I+AA++ I +IT   + NK
Sbjct: 585 IVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNK 644

Query: 622 I---------------YKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                           ++G+V K+ +FGAF+      DGL+H S+
Sbjct: 645 KGFKEKDLSNFEIGEEFEGKVKKITNFGAFIELKNGIDGLLHNSK 689


>gi|317125320|ref|YP_004099432.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589408|gb|ADU48705.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 747

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 286/711 (40%), Positives = 421/711 (59%), Gaps = 41/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   E T++++T    ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRKVRFETGRLAKQAGGAVVAYLDEDTMIMSTTSAGKTPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           +GKIPG + RRE RPT + IL  R+IDR +RP F K  +NE QVII+V   + +    V+
Sbjct: 78  IGKIPGSFFRREGRPTTDAILTCRLIDRPLRPTFKKGLRNEVQVIISVFALNPDHQYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184
           ++ AASA+  +SGLPF GPV G +V  I+GQ+V  P   D ++   D+ V+G       A
Sbjct: 138 AINAASASTQISGLPFSGPVGGVRVSLIDGQWVAFPNFSDIERSVFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------KMCAK 227
           ++MVE E+   + D+V +          +  G    K  I+ + +          K   +
Sbjct: 198 IMMVEAESTDSTWDLVKNEGKQAPTEEVVAEGLESSKKFIKVLCEAQAELAARAAKPVEE 257

Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            P+ +D +D  F+ +E  +S     D   +  I  K  R  ++D++K  + +  + +   
Sbjct: 258 FPVFLDYEDDVFAAVESAVSA----DTAAALTIAGKTEREDRLDEIKAAVKAQLAGQFEG 313

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E EI + F  +Q K+VR  +L  KVR+DGR    +R + A+V +L R HGS++F RG+
Sbjct: 314 -REKEISAAFRSVQKKLVRQRILRDKVRIDGRGLADIRALGAEVEVLPRVHGSAIFERGE 372

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL   + EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA
Sbjct: 373 TQIMGVTTLNMLKMEQQLDTLSPQTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 432

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 433 ERALMPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMG 492

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL
Sbjct: 493 LVSDEVDGETRYAALTDILGAEDAFGDMDFKVAGTKEFVTAIQLDTKLDGIPATVLAGAL 552

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QA+  RLHIL+ M++ +     ++  + PR+  + +P D+I  VIG  GK+I  I + T
Sbjct: 553 TQARDARLHILDVMAEAIDVPD-EMSPYAPRIITVKVPVDKIGEVIGPKGKMINQIQDDT 611

Query: 582 GAKVNIDDDGTVKIAS--SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGTV I +     AE   A     +   +PEV + + G VVK   FGAFV  
Sbjct: 612 GADISIEDDGTVFIGAVDGPSAEAARAAINAIANPTMPEVGERFLGTVVKTTTFGAFVSL 671

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
              +DGL+HIS++      +R+    DVVK G  + V+L + D RGK+ L+
Sbjct: 672 LPGKDGLLHISEVRKLVGGKRIDNVDDVVKIGQKIQVELKEIDPRGKLSLA 722


>gi|305431698|ref|ZP_07400867.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
 gi|304445293|gb|EFM37937.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
          Length = 738

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/705 (39%), Positives = 421/705 (59%), Gaps = 82/705 (11%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE  G     +  ++A+Q+ GAVL   G++VVLA V  +    + +DF PLTV Y E+ Y
Sbjct: 24  IEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREEKPVE-EDFLPLTVQYIEKAY 82

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V
Sbjct: 83  AAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDLQV 142

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLM 187
           +S+ AAS AL LS +P + PV G ++  I  ++VLNP  +E + S LDL+V+G +D +LM
Sbjct: 143 MSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDELLM 202

Query: 188 VELEA---------------------------NQLSEDVVLDA-------IIFGHNECKP 213
           +E+ A                           N+LSED +L+A       I+ G N  + 
Sbjct: 203 IEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNAYEE 262

Query: 214 VIEAISKLAKMCAKEPI-------VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                 K + +  K+ I        I++    ++ + ++QM K +            R  
Sbjct: 263 AFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIVQAINQMAKSE------------RAS 310

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
           +++ + +K++++ S+  + W+E  I++    ++ K+VR+ +L+ K R DGR+   VR I+
Sbjct: 311 ELNKIAEKILNFESA--TKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIA 368

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLP 382
            +  +L   HGS LF RG TQA+VV TLG+  D Q VD L  T++N     FM++YNF  
Sbjct: 369 IETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVL--TEKNPINERFMVNYNFPG 426

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            + GE S + AP RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVC
Sbjct: 427 FSVGEASPIKAPGRRELGHGNLAKRALYPSIDEN--YPYIIRLVSEILESNGSSSMATVC 484

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           G SLAL  AGVP  K VAG+AMGL+ +GD + IL+DI G EDH G MDFKVAG+  GITA
Sbjct: 485 GGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITA 544

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +QMD+K+GGI + I+  AL QAK GR+HILN M + L E  +   E  P++E+  + P +
Sbjct: 545 LQMDIKLGGIDQKILKEALYQAKEGRIHILNIMEEALKEIVVN-EEVLPKLELFNVDPSK 603

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           I ++IG  GK I+ I+E+ G  +++D + G VKIA +   +I+AA++ I +IT   + NK
Sbjct: 604 IVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNK 663

Query: 622 I---------------YKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                           ++G+V K+ +FGAF+      DGL+H S+
Sbjct: 664 KGFKEKDLSNFEIGEEFEGKVKKITNFGAFIELKNGIDGLLHNSK 708


>gi|15827380|ref|NP_301643.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
           TN]
 gi|221229857|ref|YP_002503273.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
           Br4923]
 gi|81537101|sp|Q9CCF8|PNP_MYCLE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782731|sp|B8ZQJ6|PNP_MYCLB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13092930|emb|CAC31235.1| putative polyribonucleotide phosphorylase / guanosine
           pentaphosphate synthetase [Mycobacterium leprae]
 gi|219932964|emb|CAR70949.1| putative polyribonucleotide phosphorylase / guanosine
           pentaphosphate synthetase [Mycobacterium leprae Br4923]
          Length = 773

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 281/720 (39%), Positives = 422/720 (58%), Gaps = 47/720 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A    + ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVDPNDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD- 183
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ ++   D+ ++G    T D 
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVIAGRIVGTDDE 201

Query: 184 -----AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAI------------ 218
                A++MVE EA +   ++V        ++I+  G    KP I A+            
Sbjct: 202 GKPDVAIMMVEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQQELADVVS 261

Query: 219 SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
           S+ AK   + P   D  D   +   ++ M  ++L  +  I  K  R ++ +++K +++  
Sbjct: 262 SRQAKPPVEYPTFPDYGD--DVYYSVASMATDELAAALTIGAKLERDQRTNEIKTQVLER 319

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
            +  +    E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS
Sbjct: 320 LAGTYEG-REKELGAAFRSLTKKLVRQRILTNHFRIDGRGITDIRALSAEVAVVPRAHGS 378

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           +LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RRE
Sbjct: 379 ALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRRE 438

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           IGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  P
Sbjct: 439 IGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAP 498

Query: 459 VAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           VAGIAMGLV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ 
Sbjct: 499 VAGIAMGLVSDDVEFDGGTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLD 558

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  
Sbjct: 559 GIPSQVLAGALAQAKDARLTILEVMAEAIDRPD-EMSPYAPRVITIKVPVDKIGEVIGPK 617

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628
           GKVI  I E+TGA+++I+DDGTV + ++     +AA   I +I +  +P V + + G VV
Sbjct: 618 GKVINAITEETGAQISIEDDGTVFVGATDGLSAQAAINKINAIANPQLPTVGERFLGTVV 677

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           K+ +FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D + RGKI L +
Sbjct: 678 KITEFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIEKRGKISLVL 737


>gi|2342619|emb|CAB11392.1| guanosine pentaphosphate synthetase/ polyribonucleotide
           nucleotidyltransferase [Mycobacterium leprae]
          Length = 777

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 281/720 (39%), Positives = 422/720 (58%), Gaps = 47/720 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A    + ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 26  FGTRAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTVDVEERMYA 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 86  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVDPNDLYDVL 145

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD- 183
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ ++   D+ ++G    T D 
Sbjct: 146 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVIAGRIVGTDDE 205

Query: 184 -----AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAI------------ 218
                A++MVE EA +   ++V        ++I+  G    KP I A+            
Sbjct: 206 GKPDVAIMMVEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQQELADVVS 265

Query: 219 SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
           S+ AK   + P   D  D   +   ++ M  ++L  +  I  K  R ++ +++K +++  
Sbjct: 266 SRQAKPPVEYPTFPDYGD--DVYYSVASMATDELAAALTIGAKLERDQRTNEIKTQVLER 323

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
            +  +    E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS
Sbjct: 324 LAGTYEG-REKELGAAFRSLTKKLVRQRILTNHFRIDGRGITDIRALSAEVAVVPRAHGS 382

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           +LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RRE
Sbjct: 383 ALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRRE 442

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           IGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  P
Sbjct: 443 IGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAP 502

Query: 459 VAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           VAGIAMGLV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ 
Sbjct: 503 VAGIAMGLVSDDVEFDGGTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLD 562

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  
Sbjct: 563 GIPSQVLAGALAQAKDARLTILEVMAEAIDRPD-EMSPYAPRVITIKVPVDKIGEVIGPK 621

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628
           GKVI  I E+TGA+++I+DDGTV + ++     +AA   I +I +  +P V + + G VV
Sbjct: 622 GKVINAITEETGAQISIEDDGTVFVGATDGLSAQAAINKINAIANPQLPTVGERFLGTVV 681

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           K+ +FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D + RGKI L +
Sbjct: 682 KITEFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIEKRGKISLVL 741


>gi|328885433|emb|CCA58672.1| Polyribonucleotide nucleotidyltransferase [Streptomyces venezuelae
           ATCC 10712]
          Length = 739

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 284/718 (39%), Positives = 423/718 (58%), Gaps = 45/718 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ +L  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+ +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ +        +K AK   +
Sbjct: 197 AIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ +D +D   + E ++  +K DL  +  I  K  R  ++D +K+    K++  F    
Sbjct: 257 FPVFLDYQD--DVLEALTAAVKGDLAKALTIAGKQERETELDRIKELAAEKLLPAFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISGAYRALTKKLVRERIIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+ +  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISEEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L   + D
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLAIGSKVQVEIAEIDQRGKLSLIPVIAD 726


>gi|88801520|ref|ZP_01117048.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
           irgensii 23-P]
 gi|88782178|gb|EAR13355.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
           irgensii 23-P]
          Length = 746

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/692 (39%), Positives = 426/692 (61%), Gaps = 17/692 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD   F PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYEQKD-LGFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYTAETQVMIQLMSHDEDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  ING++++NP R    +  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRINGKFIINPTRAQLAESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIK 249
            +++SE+ + DAI F H   K    A  +LA+   K+ +     +++  +LE+ +  M  
Sbjct: 194 MDEISEEEMADAIKFAHEAIKVQCAAQIRLAEAFGKKEVREYEKAREDKELEKRVHDMAY 253

Query: 250 EDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           + +  ++     K+ R     ++K  + + F+ E  +   G +   +   +   +R + L
Sbjct: 254 DKVYAIAEAGSSKHERTAAFKEIKTAIKATFTEEELADYGGLVSDYYRKAEKAAIRDLTL 313

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +  +R+DGR ++ +R I ++V  L   HGS++F RG+TQA+  VTLGT  D   +D  S 
Sbjct: 314 NVGLRLDGRKTDEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSF 373

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
               +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P     PYT+R+VSE
Sbjct: 374 EGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIPTDC--PYTVRVVSE 431

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGDEDHL 486
           + ES+GSSSMATVC  ++ALMDAGV + +PV+GIAMGL+ D +   + +LSDI GDEDHL
Sbjct: 432 VLESNGSSSMATVCAGTMALMDAGVQMIRPVSGIAMGLISDAESGKYAVLSDILGDEDHL 491

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT  GITA QMD+K+ G+   I+V AL+QA+ GRLHIL ++++ +S + +++
Sbjct: 492 GDMDFKVTGTSEGITACQMDIKVKGLGYEILVNALKQAREGRLHILGKITETISTANVEV 551

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLA 601
            E+ P++    IP + I   IG GGK I+ + ++TG  + I +D     G ++I  +   
Sbjct: 552 KEYAPKMINRRIPNELIGAFIGPGGKHIQELQKETGTTIVITEDAVTEEGIIEILGTDPE 611

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAK 659
            IE     I S+   PEV   Y+ +V+K++DFGA V +  A   + L+H+S+L+ ER   
Sbjct: 612 GIEKVIARIESMLFKPEVGSAYEVKVIKILDFGAVVEYVEAPGNEVLLHVSELAWERTDN 671

Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
            SDVVK GD + VK    D R  K K+S K +
Sbjct: 672 VSDVVKMGDILDVKYFGLDPRTRKEKVSRKAL 703


>gi|86131670|ref|ZP_01050268.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
           MED134]
 gi|85818115|gb|EAQ39283.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
           MED134]
          Length = 742

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/695 (39%), Positives = 431/695 (62%), Gaps = 23/695 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD  DF PLTV+Y+E+  A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYESKD-VDFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  +NG++++NP R   ++  +D+ +  + ++V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDIDMMIGASAESVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMSQ 246
            +++SE+ + DAI F H   K   EA  +LA+   ++     P   + +D  K   +M+ 
Sbjct: 194 MDEISEEEMADAIKFAHEHIKVQCEAQMRLAEAVGRKEVREYPAEREDEDLKKKVHDMA- 252

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-VFEDIQAKVVRT 305
              +   ++     K  R      +K+++ + FS E    + G++VS  +   +   +R 
Sbjct: 253 -YDKVYAIAKAGSSKKERGMAFSQIKEEIKATFSEEELE-DFGDLVSKYYRSAEKAAIRD 310

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           + L++ +R+DGR +  +R I  +   L   HGS++F RG+TQA+  VTLGT  D   +D 
Sbjct: 311 LTLNEGLRLDGRQTVDIRPIWCETDYLPSVHGSAVFTRGETQALATVTLGTSRDANQIDM 370

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            S      F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P     PYT+R+
Sbjct: 371 PSHEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMVPDDC--PYTVRV 428

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGDE 483
           VSE+ ES+GSSSMATVC  ++A+MDAG+ ++KPV+GIAMGL+ D +   + +LSDI GDE
Sbjct: 429 VSEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETGKYAVLSDILGDE 488

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT+ GITA QMD+K+ G+S  I+V ALQQA+ GRLHIL +++  ++  R
Sbjct: 489 DHLGDMDFKVTGTEDGITACQMDIKVKGLSYEILVNALQQARAGRLHILEKLTDTIAAPR 548

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASS 598
             + ++ P++  + I  + I  +IG GGKVI+ + ++TG  + I++D     G V+I  +
Sbjct: 549 EDVKDYAPKMVGVRIANEYIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGVVEILGT 608

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTER 656
             A I+A    I SIT  P V   YK +V+K++DFGA V +  A   + L+H+S+++ ER
Sbjct: 609 GQAGIDAVLAKIDSITFKPVVGNTYKVKVIKMLDFGAVVEYLDAPGNEVLLHVSEIAWER 668

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
               SDV+  G+ + VK    D R  K K+S K +
Sbjct: 669 TENASDVLSMGEELDVKYFGIDKRTRKEKVSRKAL 703


>gi|95932676|gb|ABF57675.1| chloroplast polyribonucleotide phosphorylase [Chlamydomonas
           reinhardtii]
          Length = 854

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 284/712 (39%), Positives = 429/712 (60%), Gaps = 32/712 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ +KLETG I RQ++GA++AT GET++ AT     S      F PLTVNY ER  A G+
Sbjct: 94  GKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAGR 153

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
             GG+++R+ RP + E+L+SR++DR IRP+F+K + N+TQ++  V+ +D  + P  +++ 
Sbjct: 154 TSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAIT 213

Query: 133 AASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           AA+AAL++S +P +  V G +V    +G +++NP ++E + S LDL V+GT+DAVLM+E 
Sbjct: 214 AAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIEG 273

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQMI 248
             + L+E+ +++A+  G      + + +   AK   K P   D+      +LE  + +++
Sbjct: 274 FCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGK-PKRTDAVVTVPEELESRLMELV 332

Query: 249 KEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS-------------- 293
            + L  +      K VR   + + + + +   ++E  + +  E V               
Sbjct: 333 GDSLTAAYKTSLSKEVRGAAVAEAQARALEALAAESGAASGSETVGGNGNGGGGRSYTPL 392

Query: 294 ----VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
                 E ++++V+R ++LD++VR DGR    +R ++ + GLL RTHGS+LF RG+TQ+I
Sbjct: 393 QISMALEAVESRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSI 452

Query: 350 VVVTLGTREDEQYVDSLSGTQRND-----FMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
            V TLG+  D    D++      D     F + Y+F P + GE  R GAP RRE+GHG L
Sbjct: 453 CVATLGSANDALRSDTMRKPDGEDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGEL 512

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+ P+LP  AQFPYT+R+ S ITES+GSSSMA+VCG  LA+MDAGVPI++PVAGIAM
Sbjct: 513 AQRALAPILPDPAQFPYTVRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAM 572

Query: 465 GLVKDGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           GL+ + +    +LSDI G ED LG MDFKVAG    ITA QMD+K+ GI+ +IM  ALQQ
Sbjct: 573 GLILESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKVEGITLDIMAKALQQ 632

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK GR HIL++M+K        L    PR+  + I PD+   VIG GG+VI+ I + +GA
Sbjct: 633 AKAGRRHILDQMAKCAPPPANTLSAHAPRMMRLQIDPDKKGAVIGSGGRVIKQIRDVSGA 692

Query: 584 -KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCG 641
             ++ID+ G V + + S      A E ++ +   PE   I++ + V  +  FG FV  C 
Sbjct: 693 TAIDIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCP 752

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            R GLVH+S+L        + VVK GD + V ++   D GK+ LS K V ++
Sbjct: 753 GRQGLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQRH 804


>gi|311744161|ref|ZP_07717966.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
           DSM 15272]
 gi|311312516|gb|EFQ82428.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
           DSM 15272]
          Length = 753

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 292/724 (40%), Positives = 432/724 (59%), Gaps = 46/724 (6%)

Query: 4   VHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFF 57
           +HTVE       +  R ++ ETG +A+Q+ G+V A   + T++L+     R  K+  DFF
Sbjct: 17  LHTVETVIDNGRFGTRTVRFETGVLAQQAAGSVSAYLDDDTMLLSATTAGRHPKEFLDFF 76

Query: 58  PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117
           PLT++ +ER YA G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+INV
Sbjct: 77  PLTIDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFKKGLRNEVQVVINV 136

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDL 176
           M  + ++   V+++ AASA+  +SGLPF GPV   +V  I+GQ+V  P   + ++   D+
Sbjct: 137 MALNPDTPYDVLAINAASASTQISGLPFTGPVGATRVALIDGQWVAFPSHSQLEEAVFDM 196

Query: 177 FVSG---------TQDAVLMVELEANQLSEDVV-------LDAIIFGHNECKPV-----I 215
            V+G         +  A++MVE E+ + + D+V        + ++ G  E   V      
Sbjct: 197 VVAGRIAAQADGSSDVAIMMVEAESTEATWDLVQSGVQAPTEEVVAGGLEAAKVAIRQMC 256

Query: 216 EAISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL 271
           EA S+LA   AK     PI +D +D +   + ++++   DL  +  I  K  R ++  ++
Sbjct: 257 EAQSELAAAAAKPVKDFPIFLDYEDDAF--DAVAEVASGDLAQALTILHKADREERESEI 314

Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331
           K  +V     E     E E+ +    +   +VR  +L  KVR+DGR    +R++SA+V +
Sbjct: 315 KANVVEQLG-ERFEGREKELGAALRSLTKSLVRDRVLRDKVRIDGRGLADIRELSAEVSV 373

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391
           + R HGS+LF RG+TQ + V TL   + EQ +D+LS   +  +M +YNF P +TGE  R+
Sbjct: 374 IPRVHGSALFQRGETQILGVTTLNMLDLEQKLDTLSPETKRRYMHNYNFPPFSTGETGRV 433

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G+P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L L++A
Sbjct: 434 GSPKRREIGHGALAGRALLPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLGLLNA 493

Query: 452 GVPISKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           GVP+  PVAGIAMGL+    DG  +++ L+DI G ED  G MDFKVAGT   ITA+Q+D 
Sbjct: 494 GVPLRAPVAGIAMGLISGEVDGRTEYVTLTDILGAEDAFGDMDFKVAGTPEFITALQLDT 553

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI  +++  AL QAK  RL IL+ M++ + E   ++  + PR+  + IP D+I  VI
Sbjct: 554 KLDGIPADVLAGALNQAKGARLTILDVMAQAIDEPD-EMSPYAPRIITIKIPVDKIGEVI 612

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS--LAEIEAAREMIRSITDVPEVNKIYKG 625
           G  GKVI  + + TGAK++IDDDGTV + + +   AE   A     +   +PEV + Y G
Sbjct: 613 GPKGKVINQLQDDTGAKISIDDDGTVYVGADNGDAAEAARAAINAIANPTMPEVGERYLG 672

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            VVKV+DFGAF+     +DGL+HIS+L      +RV    DVV  G  + V++ +  DRG
Sbjct: 673 TVVKVVDFGAFISLSPGKDGLLHISKLRDLNGGQRVNNVEDVVSVGQKIQVEIAELGDRG 732

Query: 682 KIKL 685
           KI L
Sbjct: 733 KISL 736


>gi|108799067|ref|YP_639264.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. MCS]
 gi|119868182|ref|YP_938134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. KMS]
 gi|126434670|ref|YP_001070361.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. JLS]
 gi|123178942|sp|Q1BA76|PNP_MYCSS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610288|sp|A3PY93|PNP_MYCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610289|sp|A1UET6|PNP_MYCSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108769486|gb|ABG08208.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. MCS]
 gi|119694271|gb|ABL91344.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. KMS]
 gi|126234470|gb|ABN97870.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. JLS]
          Length = 759

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 289/710 (40%), Positives = 428/710 (60%), Gaps = 37/710 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    ET++L+     +S KD  DFFPLT++ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKSPKDHFDFFPLTIDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    VV
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFVSGLRNEIQVVVTVMSLDPKDLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--A 184
           ++ AASA+  ++GLPF GPV G +V  I+G +V  P +++ ++   D+ V+G  T D  A
Sbjct: 142 AINAASASTQIAGLPFSGPVGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKTADDVA 201

Query: 185 VLMVELEANQLSEDVV-------LDAIIF-GHNECKPVI----EAISKLAKMCAKEPIVI 232
           ++MVE EA     ++V        +A++  G    KP I    EA  +LA   AK     
Sbjct: 202 IMMVEAEATDKVVELVAGGAQAPTEAVVAEGLEAAKPFIKVLCEAQQELAGRAAKP--TA 259

Query: 233 DSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           D   F +  E++    + +  + L  +  I  K  R  + D++K +++   + + +   E
Sbjct: 260 DYPLFPEYGEDVYYAVASVATDALSEALTIAGKEERNNRTDEIKVEVLGRLADQFAG-RE 318

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            EI   F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+TQ 
Sbjct: 319 KEIGGAFRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAIVPRAHGSALFERGETQI 378

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 379 LGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERA 438

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV 
Sbjct: 439 LMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVS 498

Query: 469 DGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   ++  A
Sbjct: 499 DDVEVDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQVLAGA 558

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  R+ IL  M++ + ++  ++  + PR+  + +P D+I  VIG  GK+I  I E+
Sbjct: 559 LAQAKDARITILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSITEE 617

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA ++I+DDGTV + +S+    +AA + I +I +  +P++ + + G VVK  DFGAFV 
Sbjct: 618 TGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKIGERFLGTVVKTTDFGAFVS 677

Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
               RDGLVHIS+L   +R+AK  DV K GD + V++ D D+RGKI L +
Sbjct: 678 LLPGRDGLVHISKLGRGKRIAKVEDVAKVGDKLRVEIADIDNRGKISLVL 727


>gi|260063685|ref|YP_003196765.1| polynucleotide phosphorylase/polyadenylase [Robiginitalea biformata
           HTCC2501]
 gi|88783130|gb|EAR14303.1| putative polyribonucleotide nucleotidyltransferase [Robiginitalea
           biformata HTCC2501]
          Length = 750

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/687 (39%), Positives = 425/687 (61%), Gaps = 24/687 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G  ++L TVV +    D  DF PLTV+Y+E+ +A G+
Sbjct: 15  GREISIETGKLAKQAHGSVVVRSGNCMLLCTVVSNYKASD-LDFLPLTVDYREKFHASGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP+  EIL+ R++DR +RPLF K Y  ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSTGEILVMRLVDRVLRPLFPKNYHCETQVMIQLMSHDDDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE P+   +V  ++G++++NP R   +   +D+ V  ++D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECPISEVRVGRVDGEFIINPTRTQLESSDIDMIVGASEDSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            +++SE+ + +AI F H   K  I A ++LA    ++   +   +  +  E + + I++ 
Sbjct: 194 MDEISEEDMTEAIKFAHEAVKVQIAAQNRLADKAGRK--EVREYEIEEENEAVEKKIRDI 251

Query: 252 LRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
                +   K    KQ       +LK+++++ FS E        I   +  ++ + VR +
Sbjct: 252 AYDKAYAIAKAGSAKQERSAAFSELKEEVLAAFSEEEQEELGDLIKKYYYKVEKEAVRNL 311

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD-- 364
            LD+++R+DGR ++ +R I  +V  L  THGS++F RG+TQA+  VTLGT  +   +D  
Sbjct: 312 TLDEQIRLDGRKTDEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANIIDMP 371

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S  G +R  F +HYNF P +TGE   +   SRREIGHG LA+RA+   +P+    PYT+R
Sbjct: 372 SFEGEER--FYLHYNFPPFSTGEARPIRGTSRREIGHGNLAQRALSRQVPEDC--PYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--FIILSDISGD 482
           +VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ D +   + +LSDI GD
Sbjct: 428 VVSEVLESNGSSSMATVCAGTMALMDAGVKLRKPVSGIAMGLISDPESGKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+KI G+S  I++ AL+QA+ GRLHIL++++  ++  
Sbjct: 488 EDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILIKALKQARDGRLHILSKLTDTIAAP 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597
              +    P++    IP + I  VIG GG+VI+ + ++TG  + I++D     G V+I  
Sbjct: 548 AEDVKPHAPKMVTRIIPNEYIGAVIGKGGEVIQELQKETGTTIVINEDPATGEGIVEILG 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655
           +    I+     I SI   PE   +Y+ +V+K++DFGA V +  A   + L+H+S+L+ E
Sbjct: 608 TDQGGIDKVLAKIDSIMFTPEEGSVYEVKVIKMLDFGAVVEYLDAPGNEILLHVSELAWE 667

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           R     DV+  GD   VK +  D R +
Sbjct: 668 RTENVEDVLSMGDVFDVKYMGIDPRTR 694


>gi|237785717|ref|YP_002906422.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|257096678|sp|C4LJ74|PNP_CORK4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237758629|gb|ACR17879.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 775

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 292/750 (38%), Positives = 429/750 (57%), Gaps = 73/750 (9%)

Query: 2   FDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQD 55
           F  H+VE      ++  R ++LETG++ARQ++G+V+A   E T++L+T       ++G D
Sbjct: 28  FGTHSVEATIDNGDFGSRTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFD 87

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
           FFPLTV+ +ER YA G+IPG + RRE RP  + IL  R+IDR +RP F K  +NE QVI+
Sbjct: 88  FFPLTVDVEERMYAAGRIPGSFFRREGRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIV 147

Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNPRLDE 169
            VM  D +    VV++ AASA+  LSGLP  GPV G ++      D+ +GQ+V  P  ++
Sbjct: 148 TVMSLDPKDMYDVVAINAASASTQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQ 207

Query: 170 DQGSL-DLFVSGT---------------------------QDAVLMVELEANQLSEDVVL 201
            + +L ++ V+G                              A++MVE  A +   + V 
Sbjct: 208 HESALFEMVVAGRLTDEQVPEKPRKGRRRGRKSSPRKKTDNVAIMMVEAGATETVVERVN 267

Query: 202 DA--------IIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----------SKLEE 242
           D         +  G    KP I  +   A+   ++ +  ++++F           + ++ 
Sbjct: 268 DGAPAPTESVVAEGIEAAKPFIAELCG-AQQALRQAVDPETEEFPLFPPYGADVLAAVDS 326

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E    I + + ++            +DD  + ++  F        E EI +    +  +V
Sbjct: 327 EAKGRISDIMSIADKQERDEALSSDMDDTVEALLEEFPE-----REAEIRAAHNAVTKEV 381

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ +L    R+DGR  E +RD+  +V L+ R HGSSLF RG+TQ + V TL T + EQ 
Sbjct: 382 VRSRILADGFRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQ 441

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           VDSL       ++ HYNF P +TGE  R+G+P RREIGHG LA RA+ P++P    FPYT
Sbjct: 442 VDSLGPVDHRRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALKPMIPSRDDFPYT 501

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL----VKDGDDFIILSD 478
           +R VSE   S+GS+SM +VC S+L+L +AGVP+  PVAGIAMGL    VK    ++ L+D
Sbjct: 502 IRQVSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKMTYVTLTD 561

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT+  ITA+Q+D K+ GI  +++  AL+QA+  RL ILN M++V
Sbjct: 562 ILGAEDAFGDMDFKVAGTEDFITALQLDTKLDGIPSDVLAGALKQAREARLEILNTMAEV 621

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E    + ++ PR+  +++P  +I  VIG  GK I  I E TGA+V+I+DDGTV I+++
Sbjct: 622 IDEPD-PMSDYAPRITTISVPVSKIGEVIGPKGKNINQITEDTGARVSIEDDGTVFISAT 680

Query: 599 SLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STE 655
           S    EAA + I  I +  +P+V + + G VVK   FGAFV     RDGLVHIS+L   +
Sbjct: 681 SGGSAEAAVDRINEIANPQLPKVGERFLGTVVKTTAFGAFVSILPNRDGLVHISKLGGKK 740

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           R+ K  DVV  GD + V++ D D+RGKI L
Sbjct: 741 RIEKVEDVVNVGDKLEVEIADIDNRGKISL 770


>gi|297626619|ref|YP_003688382.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) (PNPase) (Guanosine pentaphosphate
           synthetase) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922384|emb|CBL56956.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) (Guanosine pentaphosphate
           synthetase) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 736

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/714 (39%), Positives = 428/714 (59%), Gaps = 41/714 (5%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ ETG +A+Q+DGA  A Y  G++++L+T    +  ++  DFFPLTV+ +E+ YAVG+I
Sbjct: 23  MRFETGLLAQQADGAA-AVYLDGDSMLLSTTTAQKKPREAIDFFPLTVDVEEKMYAVGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+EN IL  R+IDR +RP F K  +NE QV++ V+  + +    +V+M A
Sbjct: 82  PGSFFRREGRPSENAILTCRLIDRPLRPAFKKGLRNEVQVVVTVLALNPQVEYDMVAMNA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QDAVLM 187
           AS +  +SGLPF GP+   ++  I  Q+V  P +D+++  +  + V+G        A++M
Sbjct: 142 ASMSTQISGLPFSGPIGAVRISLIGDQWVCLPTVDQEKDATFSMVVAGRVLPDGDIAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVI----EAISKLAKMCAKEPIVIDSK 235
           VE    + + ++V         + +  G +  KP I    +A ++LA    KE    D  
Sbjct: 202 VEAGGTEATWELVKGGRTAPTEEVVAAGLDAAKPFIKVLCDAQAELAAQVNKE--TYDFP 259

Query: 236 DFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGE 290
            F + E+++   +KE     L     +  K  R +   DLK ++V     E      EGE
Sbjct: 260 VFKEYEDDVWDRVKELGYDKLDKIEQVAAKLDRQEAESDLKHEIVGQMVGEEDFEGREGE 319

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I   F+ ++ K+VR  +L K VR+DGR  + +R +S++VG++ R HGS LF RG+TQ + 
Sbjct: 320 IAGAFKALEKKIVRDRVLSKGVRIDGRGPKDIRALSSEVGVVPRVHGSGLFQRGETQVLG 379

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + TL   + EQ +D+LS      +M  Y   P +TGE  R+G+P RRE+GHG LA RAI 
Sbjct: 380 ITTLNMLDMEQKLDTLSSVHTKRYMHQYEMPPYSTGETGRVGSPKRREVGHGALASRAIV 439

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+ + 
Sbjct: 440 PVLPTREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLMSET 499

Query: 471 DD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL QA+
Sbjct: 500 DESGKTSYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLNGIPADVLAAALLQAR 559

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             R  IL+ +   + +S  ++  + PR+  + IP D+I  VIG  GKVI  I + TGA +
Sbjct: 560 DARHAILDVIHDAI-DSPDEMSPYAPRIITVHIPTDKIGEVIGPKGKVINQIQDDTGANI 618

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           +I++DGT+ + + +    EAAR MI +I +  +PE  + Y G VVK+  FGAF+     +
Sbjct: 619 SIEEDGTIYVGADNGDAAEAARTMINAIANPTMPERGERYLGTVVKLTSFGAFISLLPGK 678

Query: 644 DGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           DGL+HIS+L      +RV    DV+  G  + V++ D DDRGK+ L + V+D++
Sbjct: 679 DGLLHISKLRALNDGKRVENVEDVLSVGQKLQVEISDIDDRGKLSL-VPVLDED 731


>gi|283458493|ref|YP_003363120.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
           DY-18]
 gi|283134535|dbj|BAI65300.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
           DY-18]
          Length = 739

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 293/713 (41%), Positives = 426/713 (59%), Gaps = 43/713 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           R ++ ETGR+A+Q++G+VL T   ET +L+  V  +S +DG DFFPLTV+ +ER YA GK
Sbjct: 21  RHVRFETGRLAKQANGSVLVTIDDETTLLSATVVGKSPRDGFDFFPLTVDVEERMYAAGK 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  Y RRE RP+   IL +R+IDR +RP F+K  +NE QV++ V+ ++ +   +  ++ 
Sbjct: 81  IPASYFRREGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYNPDEIYNTFAIN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183
           AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G        T+D
Sbjct: 141 AASASTTLSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGTED 200

Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISK----LAKMCAKEP 229
            A++MVE EA   S  ++ +          +  G    KP I A+ K    LA    K  
Sbjct: 201 VAIMMVEAEATDNSWKLIKEDGQTAPTEEVVAQGLEAAKPFIAALCKAQADLASRAGKP- 259

Query: 230 IVIDSKDFSKLEEEMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
             ++   F    E++   +KE   D  V  + I  K  R     +L+++++   + E   
Sbjct: 260 -ALELPFFGGHGEDVDAAVKEFAADRLVEVYSIAGKQEREAAAAELQEELMEALTGEGKE 318

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E   E+   F  +   VVR  +L ++VR+DGR    +R ++A+V +L R HGS+LF R
Sbjct: 319 FEERSNEVSVAFAALTKHVVRQRILTEQVRIDGRGLTDIRQLTAEVEILPRVHGSALFER 378

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + + TL   + EQ +DSL   +   ++ HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 379 GETQIMGITTLNMLKMEQQLDSLHPVKSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 438

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 439 LAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 498

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 499 MGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 558

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL  +   + ++  ++ EF PR+  + IP  +I  VIG  GK+I  I E
Sbjct: 559 ALTQAREARLHILEVLVSAI-DAPDEMSEFAPRIISVKIPVAKIGEVIGPKGKMINQIQE 617

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I ++     EAAR  + +I +  VPEV + Y G VVKV DFGAF+
Sbjct: 618 DTGADISIEDDGTVYIGAADGPSAEAARAAVNAIANPQVPEVGERYLGTVVKVTDFGAFI 677

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ L+
Sbjct: 678 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLA 730


>gi|302558058|ref|ZP_07310400.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           griseoflavus Tu4000]
 gi|302475676|gb|EFL38769.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           griseoflavus Tu4000]
          Length = 747

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 284/708 (40%), Positives = 418/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ + +          K   +
Sbjct: 197 AIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALAGAVKPELASALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 K---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGHKVQVEIAEIDSRGKLSL 720


>gi|288925349|ref|ZP_06419283.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
 gi|288337820|gb|EFC76172.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
          Length = 746

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 276/677 (40%), Positives = 409/677 (60%), Gaps = 28/677 (4%)

Query: 36  GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95
           G TV+LATV   +    G DF PL V+Y+E+  A G+ PGG+ +RE +  ++EIL SR++
Sbjct: 2   GNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRFPGGFTKREGKANDDEILTSRLV 61

Query: 96  DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155
           DR++RPLF   Y  E  V + ++  D    P  ++  AASAA+  S +PF+ P+   +V 
Sbjct: 62  DRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGFAASAAMACSDIPFDYPISEVRVA 121

Query: 156 YINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214
            + G+YV+NP   +     +DL V  T+D ++MVE E  ++SE  ++ A+       KP+
Sbjct: 122 RVGGEYVINPTFQQMADADMDLMVGATKDNIMMVEGEMKEVSEQDLIGALKVAAEAIKPM 181

Query: 215 IEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCF-----IPEKYVRCKQID 269
            E   +L+K    +  V    D    +EE+ + IK +L    +       EK+ R    D
Sbjct: 182 CELQEELSKELGTD--VKREYDHEVNDEELREQIKSELYQPVYDVNKQALEKHARQDAFD 239

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVS-------VFEDIQAKVVRTVMLDKKVRMDGRDSETV 322
            + +  +  + + H+  +E E+          ++D+    +R  +LD+ +R+DGR +  +
Sbjct: 240 KILEDFLEKYDAAHTELSEDELDEKHAEAHRYYDDVMRDAMRRCILDEGLRLDGRATTEI 299

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS--LSGTQRNDFMMHYNF 380
           R I ++V  L   HGS+LF RG+T ++   TLGT+ DE+ VD   + G QR  F++HYNF
Sbjct: 300 RPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGYQR--FLLHYNF 357

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P +TGE        RRE+GHG LA R +   +P  A FPYT+R+VS+I ES+GSSSMAT
Sbjct: 358 PPFSTGEAKAQRGVGRREVGHGHLAWRGLKDQIP--ADFPYTVRLVSQILESNGSSSMAT 415

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISGDEDHLGHMDFKVAGTDS 498
           VC  +LALMDAGVP+ KPV+GIAMGL+K+   D + ILSDI GDEDHLG MDFK  GT  
Sbjct: 416 VCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILSDILGDEDHLGDMDFKTTGTKD 475

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G+TA QMD+K  G+S  I+  AL QAK GR HILN+M + +SE R ++    PR+E   I
Sbjct: 476 GLTATQMDIKCDGLSFEILEKALMQAKAGREHILNKMMETISEPRAEMKPQVPRIEAFEI 535

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEAAREMIRSITD 615
           P + I  VIG GGK+I+ + E TGA + ID+    G V++++ +   I+AA   IRSI  
Sbjct: 536 PKEFIGAVIGPGGKIIQQMQEDTGATITIDETDGVGKVQVSAPNKDAIDAAIAKIRSIVA 595

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKL 674
           +PEV ++Y+G V  +M +G FV     +DGL+HIS++  +R+    +  +KEGD + VKL
Sbjct: 596 IPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDWKRLETVEEAGIKEGDKLKVKL 655

Query: 675 LDFDDR-GKIKLSMKVV 690
           ++ D + GK KLS +V+
Sbjct: 656 MEIDPKTGKYKLSRRVL 672


>gi|255073611|ref|XP_002500480.1| predicted protein [Micromonas sp. RCC299]
 gi|226515743|gb|ACO61738.1| predicted protein [Micromonas sp. RCC299]
          Length = 838

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 288/732 (39%), Positives = 426/732 (58%), Gaps = 60/732 (8%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + +ETGRI RQ++GAV+ T GETV+ AT+   R +     F PLTVNYQER  AVG+  G
Sbjct: 63  VTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVPLTVNYQERYSAVGRTAG 122

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           GY +R+    ENE LI R++DR +RP+  K +  +TQ++  V+ +D   S   +++ AAS
Sbjct: 123 GYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQILEWVLSYDGARSTDALAITAAS 182

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQY--VLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA 192
            A  +S +P + P+ G +V  + G+   ++NP  ++ ++  LDL ++GT+DAV+M+E   
Sbjct: 183 CAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDLVLAGTEDAVMMIEGFG 242

Query: 193 NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           + L+   +L AI  GH    N C+  I+A +K       E  V+ + +   +++ +  ++
Sbjct: 243 DFLTTQEMLYAIEKGHEAVANACRD-IDAWAKDVGRVKNEAAVLVAPE--GVDDAVRALV 299

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMV-------------------------------- 276
             +L  +  I  K  R   ++ ++ + +                                
Sbjct: 300 GAELAEAMAISVKQTRGAAVEGIRARAIESLAGGDDAKFTVSAVRRPAQSLRFAFCALLL 359

Query: 277 -SYFSSEHSSWN-----------EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
            S F     +++           E ++       ++  +R+++    VR DGRD++TVR 
Sbjct: 360 FSLFPPGPRAFSRPFVRLPPPALENDVRLACGRCESNALRSMIRANGVRQDGRDTKTVRP 419

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           I+   GLL RTHGSSLF RG+TQAI   TLG   D Q VD L   +   F +HY F P +
Sbjct: 420 ITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKDRRFYLHYFFPPSS 479

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
            GE  R+GA SRRE+GHG LA RA+ PV+P    FP+T+R+ S ITES+GSSSMATVC  
Sbjct: 480 VGETGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLESTITESNGSSSMATVCAG 539

Query: 445 SLALMDAGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           SLAL DAGVPI++ VAGIAMGL+      G+  +IL+DI G ED LG MDFKVAG   GI
Sbjct: 540 SLALQDAGVPITRKVAGIAMGLILGDESAGEAPVILTDILGSEDALGDMDFKVAGDGDGI 599

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A QMD+K+ GI+  ++  AL+ A+ G +HIL EM K       ++  + P+VE++ +P 
Sbjct: 600 SAFQMDIKVEGITLAVLREALESARVGLVHILGEMDKADPAPAGRMSAYAPQVEVVEVPT 659

Query: 561 DQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             I  VIG GG+ I+ I EQT    ++I+++G V +  S   ++  A E+IRS+T  PEV
Sbjct: 660 KYIGKVIGKGGEQIKAICEQTKIDTIDINEEGVVTLTGSFGCDMPKAVEIIRSLTVEPEV 719

Query: 620 NKIYK-GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            K Y+  +V KV+DFGAFV      +GL H+S+L   RVA   DVV+EG T+ VKLL+ +
Sbjct: 720 GKTYRNARVTKVLDFGAFVEILPGVEGLCHVSELDVTRVANVRDVVEEGQTIDVKLLETN 779

Query: 679 DRGKIKLSMKVV 690
           +RG+ KLS + V
Sbjct: 780 ERGQFKLSRRAV 791


>gi|296139452|ref|YP_003646695.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
           paurometabola DSM 20162]
 gi|296027586|gb|ADG78356.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
           paurometabola DSM 20162]
          Length = 750

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 283/711 (39%), Positives = 421/711 (59%), Gaps = 42/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR A+Q+ G+V A    ET++L+   + +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRFAQQAAGSVAAYLDDETMLLSATSHSKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AASA+  ++GLPF GPV G +V  I+GQ+V  P +++ ++   D+ V+G        
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRIVSGSGK 204

Query: 181 -TQDAVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVI----EAISKLAKMCAK 227
               A++MVE EA +   +++        +A++  G    KP I    EA  +LA   AK
Sbjct: 205 DADVAIMMVEAEATENVIELIAGGATAPTEAVVAEGLEAAKPFIAVLCEAQKQLAAGAAK 264

Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
                P+    +D  F+ +E   +  + + L ++     K  R    D +K +++     
Sbjct: 265 PTGEFPLFPAYQDDVFAAVEAAGAAKLNDALSIAG----KQERDNATDVVKAEVLEAVGP 320

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           +     EGEI + F  +  K+VR  +L    R+DGR    +R +SA++ ++ R HGS+LF
Sbjct: 321 QFEG-REGEIGAAFRSLTKKLVRQRILTDHFRIDGRGITDIRSLSAEIAVIPRAHGSALF 379

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL   +  Q +DSL   +   +M HYNF P +TGE  R+G+P RREIGH
Sbjct: 380 ERGETQILGVTTLDMVKMAQQIDSLGPEKSKRYMHHYNFPPYSTGETGRVGSPKRREIGH 439

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAG
Sbjct: 440 GALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAG 499

Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++
Sbjct: 500 IAMGLVSDEVDGQARYVALTDILGAEDAFGDMDFKVAGTSDFVTALQLDTKLDGIPSQVL 559

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK  R  IL  M++ + ++  ++  + PR+  + +P D+I  VIG  GK I  I
Sbjct: 560 AGALGQAKDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGKTINSI 618

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            E+TGA ++I+DDGTV + ++     +AA + I +I +  +P+V + + G VVK   FGA
Sbjct: 619 TEETGANISIEDDGTVFVGAADGPSAQAAIDRINAIANPQLPKVGERFLGTVVKTTAFGA 678

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FV     RDGLVHIS+L   +RV K  DVV  G  + V++ D D+RGKI L
Sbjct: 679 FVSLVPGRDGLVHISKLGNGKRVNKVEDVVNVGSKLQVEIADIDERGKISL 729


>gi|311113230|ref|YP_003984452.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
           17931]
 gi|310944724|gb|ADP41018.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
           17931]
          Length = 753

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 287/713 (40%), Positives = 420/713 (58%), Gaps = 43/713 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           R ++ ETGR+A+Q+ G+VL T   ET +L+     +S ++G DFFPLTV+ +ER YA GK
Sbjct: 35  RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE RP    IL +R+IDR +RP F+K  +NE QV++ V+  + +   +  ++ 
Sbjct: 95  IPGSFFRREGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIYNTFAIN 154

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183
           AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G        ++D
Sbjct: 155 AASASTALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGSED 214

Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISK----LAKMCAKEP 229
            A++MVE EA   S  ++ +          +  G    KP I A+ K    L +   K  
Sbjct: 215 VAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPFIAALCKAQVDLVERAGKPD 274

Query: 230 IVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
           + +    F    E++   +K    E L     I  K  R     +L+ +++   + E   
Sbjct: 275 LELPY--FGGHGEDVDAAVKDFAGERLVEVYSIAGKQDREAAAAELEAELMEALTGEGKE 332

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E   E+   F  +    VR  +L ++VR+DGR    +R ++A+V +L R HGS++F R
Sbjct: 333 FEERANEVSVAFAALTKHTVRQRILTEQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 392

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 393 GETQIMGVTTLNMLKLEQQLDSLYPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 452

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 453 LAERALTPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 512

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 513 MGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 572

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL+ ++  + ++  ++ EF PR+  + +P  +I  VIG  GK+I  I E
Sbjct: 573 ALTQAREARLHILDVLTAAI-DAPDEMSEFAPRIISVKVPVAKIGEVIGPKGKMINQIQE 631

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I ++     EAAR  I +I +  VPEV + Y G VVKV DFGAF+
Sbjct: 632 DTGADISIEDDGTVFIGATDGPSAEAARTAINAIANPQVPEVGERYLGTVVKVTDFGAFI 691

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 692 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLS 744


>gi|71901372|ref|ZP_00683466.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71728871|gb|EAO31008.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 469

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/452 (52%), Positives = 318/452 (70%), Gaps = 2/452 (0%)

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAK 301
           + ++I   L  +  I EK  R   I  +K  ++   +   E   WN  E++  F +++ +
Sbjct: 14  LKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELEYR 73

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D Q
Sbjct: 74  TMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQ 133

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+++G  + +F+ HYNF P + GE  R G   RREIGHGRLARR +  V+P   +FPY
Sbjct: 134 VIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEFPY 193

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI G
Sbjct: 194 TIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILG 253

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L+ 
Sbjct: 254 DEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKALAA 313

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS + A
Sbjct: 314 PRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVNNA 373

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +  
Sbjct: 374 AAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERVG 433

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 434 DKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 465



 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 26/208 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER------- 66
           RP+ ++ G + R   G+ L T GET  +       + +DGQ    +T  Y+E        
Sbjct: 95  RPITVKVGVLPR-VHGSGLFTRGETQAIVVTTLG-TARDGQVIDAVTGEYKENFLFHYNF 152

Query: 67  -TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES- 124
             Y+VG+   G    + R    EI   R+  R +  +      +E    I V+    ES 
Sbjct: 153 PPYSVGEC--GRFGVQKR---REIGHGRLARRGVLAVMPSL--DEFPYTIRVVSEITESN 205

Query: 125 -SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQ--YVLNPRL-DEDQ-GSLDLFV 178
            S  + S+  +S ALM +G+P + PV G  +  +  G+   VL+  L DED  G +D  V
Sbjct: 206 GSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILGDEDHLGDMDFKV 265

Query: 179 SGTQDAV--LMVELEANQLSEDVVLDAI 204
           +GT + V  L ++++   ++E+++  A+
Sbjct: 266 AGTSEGVSALQMDIKIEGITEEIMRQAL 293


>gi|254393066|ref|ZP_05008227.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294815456|ref|ZP_06774099.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443808|ref|ZP_08218542.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706714|gb|EDY52526.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328055|gb|EFG09698.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 739

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 285/712 (40%), Positives = 420/712 (58%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISK----LAKMCAKE--- 228
           A++MVE EA + +  +V D         +  G    KP I+ + K    LA   AK    
Sbjct: 197 AIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPEGE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH 283
            P+ ++ +D   + E ++  +K +L  +  I  K  R  ++D +K+    K++  F    
Sbjct: 257 FPVFLEYQD--DVYEALTAAVKGELAQALTIAGKQDRETELDRVKELAAEKLLPAFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRSLTKALVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|254821343|ref|ZP_05226344.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 744

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 295/726 (40%), Positives = 430/726 (59%), Gaps = 51/726 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    E ++L+     +S K+  DFFPLTV+ +ER YA
Sbjct: 13  FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D      V+
Sbjct: 73  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVMSLDPNDLYDVL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AASA+  LSGLPF GP+ G +V  I+GQ+V  P +++ ++   D+ V+G        
Sbjct: 133 AINAASASTQLSGLPFSGPIGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRIVGGGAA 192

Query: 181 TQD-AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI----SKLAK 223
            +D A++MVE EA +             +E VV +    G    KP I  +     +LA 
Sbjct: 193 EKDIAIMMVEAEATENVIELVEGGAQAPTETVVAE----GLEAAKPFIATLCTAQEELAG 248

Query: 224 MCAKEPIVIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
             AK   V +   F   +E++    + +  ++L  +  I  K  R  + D+LK ++++  
Sbjct: 249 AAAKP--VGEFPTFPDYQEDVYYSVASVATDELAKALTIGGKAERDARTDELKAEVLARL 306

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           + E     E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+
Sbjct: 307 A-ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSA 365

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 366 LFQRGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREI 425

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PV
Sbjct: 426 GHGALAERALIPVLPGVEDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPV 485

Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           AGIAMGLV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ G
Sbjct: 486 AGIAMGLVSDDVEIDGRTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDG 545

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  RL IL  M++ + ++  ++  + PRV  + +P D+I  VIG  G
Sbjct: 546 IPSQVLAGALGQAKDARLTILEVMAEAI-DAPDEMSPYAPRVTTIKVPVDKIGEVIGPKG 604

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           KVI GI E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK
Sbjct: 605 KVINGITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLGTVVK 664

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
             DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L + 
Sbjct: 665 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL- 723

Query: 689 VVDQNT 694
           V D N+
Sbjct: 724 VEDDNS 729


>gi|259507481|ref|ZP_05750381.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
 gi|259164969|gb|EEW49523.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 766

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 296/734 (40%), Positives = 434/734 (59%), Gaps = 56/734 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DGAV  TY   ET++LAT       ++G DFFPLTV+ +ER 
Sbjct: 39  DFGTRTIRFETGQLARQADGAV-TTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERM 97

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QVII VM    E S  
Sbjct: 98  YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYD 157

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180
           VV++  ASAA  +SGLP  G V G ++  I       GQ+V  P  ++ + S  +L V+G
Sbjct: 158 VVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAG 217

Query: 181 ------------TQDAVLMVELEANQLSEDVVL-----------DAIIFGHNECKPVIEA 217
                       +  AV+MVE  A   SE+VV              +  G    KP I+ 
Sbjct: 218 RLVERKRGNKTFSDVAVMMVEAGA---SENVVERIKEGAPAPTEKTVAEGLEAAKPFIDL 274

Query: 218 ISK----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267
           + +    LA+  AKE    P+     D  ++ +E++ S+ + + + +      +      
Sbjct: 275 LCRAQEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDF 334

Query: 268 IDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
           + ++++K++  F  +  ++    EI + +  +  K+VR  +L +  R+DGR    +RD+ 
Sbjct: 335 MVEVEEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLG 394

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
            +V L+ R HGSSLF RG+TQ + V TL   + EQ++DSL+      +M HYNF P +TG
Sbjct: 395 VEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTG 454

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E  R+G+P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L
Sbjct: 455 ETGRVGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTL 514

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           +L +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA
Sbjct: 515 SLYNAGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITA 574

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +Q+D K+ GI   ++  AL+QA+  RL IL  M++V+ +   ++ +F PR+  + IP  +
Sbjct: 575 LQLDTKLDGIPSKVLADALEQARDARLAILETMAEVI-DGPDEMSQFAPRITTIQIPVSK 633

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVN 620
           I  +IG  GK I  + E+TGA ++I+DDGTV I+++S    EAA E I ++ +  +P+V 
Sbjct: 634 IGELIGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVG 693

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  G+ + V++ D D+
Sbjct: 694 ERFLGTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDN 753

Query: 680 RGKIKLSMKVVDQN 693
           RGKI L + VV+++
Sbjct: 754 RGKISL-VPVVEED 766


>gi|187610337|sp|Q8FPB7|PNP_COREF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 752

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 296/734 (40%), Positives = 434/734 (59%), Gaps = 56/734 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DGAV  TY   ET++LAT       ++G DFFPLTV+ +ER 
Sbjct: 25  DFGTRTIRFETGQLARQADGAV-TTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERM 83

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QVII VM    E S  
Sbjct: 84  YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYD 143

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180
           VV++  ASAA  +SGLP  G V G ++  I       GQ+V  P  ++ + S  +L V+G
Sbjct: 144 VVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAG 203

Query: 181 ------------TQDAVLMVELEANQLSEDVVL-----------DAIIFGHNECKPVIEA 217
                       +  AV+MVE  A   SE+VV              +  G    KP I+ 
Sbjct: 204 RLVERKRGNKTFSDVAVMMVEAGA---SENVVERIKEGAPAPTEKTVAEGLEAAKPFIDL 260

Query: 218 ISK----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267
           + +    LA+  AKE    P+     D  ++ +E++ S+ + + + +      +      
Sbjct: 261 LCRAQEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDF 320

Query: 268 IDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
           + ++++K++  F  +  ++    EI + +  +  K+VR  +L +  R+DGR    +RD+ 
Sbjct: 321 MVEVEEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLG 380

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
            +V L+ R HGSSLF RG+TQ + V TL   + EQ++DSL+      +M HYNF P +TG
Sbjct: 381 VEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTG 440

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E  R+G+P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L
Sbjct: 441 ETGRVGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTL 500

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           +L +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA
Sbjct: 501 SLYNAGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITA 560

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +Q+D K+ GI   ++  AL+QA+  RL IL  M++V+ +   ++ +F PR+  + IP  +
Sbjct: 561 LQLDTKLDGIPSKVLADALEQARDARLAILETMAEVI-DGPDEMSQFAPRITTIQIPVSK 619

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVN 620
           I  +IG  GK I  + E+TGA ++I+DDGTV I+++S    EAA E I ++ +  +P+V 
Sbjct: 620 IGELIGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVG 679

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  G+ + V++ D D+
Sbjct: 680 ERFLGTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDN 739

Query: 680 RGKIKLSMKVVDQN 693
           RGKI L + VV+++
Sbjct: 740 RGKISL-VPVVEED 752


>gi|25028424|ref|NP_738478.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           efficiens YS-314]
 gi|23493709|dbj|BAC18678.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 769

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 296/734 (40%), Positives = 434/734 (59%), Gaps = 56/734 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DGAV  TY   ET++LAT       ++G DFFPLTV+ +ER 
Sbjct: 42  DFGTRTIRFETGQLARQADGAV-TTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERM 100

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QVII VM    E S  
Sbjct: 101 YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYD 160

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180
           VV++  ASAA  +SGLP  G V G ++  I       GQ+V  P  ++ + S  +L V+G
Sbjct: 161 VVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAG 220

Query: 181 ------------TQDAVLMVELEANQLSEDVVL-----------DAIIFGHNECKPVIEA 217
                       +  AV+MVE  A   SE+VV              +  G    KP I+ 
Sbjct: 221 RLVERKRGNKTFSDVAVMMVEAGA---SENVVERIKEGAPAPTEKTVAEGLEAAKPFIDL 277

Query: 218 ISK----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267
           + +    LA+  AKE    P+     D  ++ +E++ S+ + + + +      +      
Sbjct: 278 LCRAQEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDF 337

Query: 268 IDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
           + ++++K++  F  +  ++    EI + +  +  K+VR  +L +  R+DGR    +RD+ 
Sbjct: 338 MVEVEEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLG 397

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
            +V L+ R HGSSLF RG+TQ + V TL   + EQ++DSL+      +M HYNF P +TG
Sbjct: 398 VEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTG 457

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E  R+G+P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L
Sbjct: 458 ETGRVGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTL 517

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           +L +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA
Sbjct: 518 SLYNAGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITA 577

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +Q+D K+ GI   ++  AL+QA+  RL IL  M++V+ +   ++ +F PR+  + IP  +
Sbjct: 578 LQLDTKLDGIPSKVLADALEQARDARLAILETMAEVI-DGPDEMSQFAPRITTIQIPVSK 636

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVN 620
           I  +IG  GK I  + E+TGA ++I+DDGTV I+++S    EAA E I ++ +  +P+V 
Sbjct: 637 IGELIGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVG 696

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  G+ + V++ D D+
Sbjct: 697 ERFLGTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDN 756

Query: 680 RGKIKLSMKVVDQN 693
           RGKI L + VV+++
Sbjct: 757 RGKISL-VPVVEED 769


>gi|50842950|ref|YP_056177.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
           KPA171202]
 gi|289426541|ref|ZP_06428284.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289428637|ref|ZP_06430320.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J165]
 gi|81611463|sp|Q6A7P6|PNP_PROAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50840552|gb|AAT83219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           KPA171202]
 gi|289153269|gb|EFD01987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289158035|gb|EFD06255.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J165]
 gi|313763615|gb|EFS34979.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL013PA1]
 gi|313794010|gb|EFS42034.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA1]
 gi|313801396|gb|EFS42647.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA2]
 gi|313807924|gb|EFS46405.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA2]
 gi|313813334|gb|EFS51048.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL025PA1]
 gi|313816795|gb|EFS54509.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL059PA1]
 gi|313819709|gb|EFS57423.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL046PA2]
 gi|313822184|gb|EFS59898.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA1]
 gi|313823581|gb|EFS61295.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA2]
 gi|313825906|gb|EFS63620.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL063PA1]
 gi|313829586|gb|EFS67300.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL063PA2]
 gi|313839882|gb|EFS77596.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL086PA1]
 gi|314914770|gb|EFS78601.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA4]
 gi|314919268|gb|EFS83099.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA1]
 gi|314920821|gb|EFS84652.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA3]
 gi|314924673|gb|EFS88504.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA3]
 gi|314930500|gb|EFS94331.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL067PA1]
 gi|314957473|gb|EFT01576.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA1]
 gi|314962057|gb|EFT06158.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA2]
 gi|314963636|gb|EFT07736.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL082PA1]
 gi|314968532|gb|EFT12630.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA1]
 gi|314978848|gb|EFT22942.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL072PA2]
 gi|314986493|gb|EFT30585.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA2]
 gi|314990852|gb|EFT34943.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA3]
 gi|315079490|gb|EFT51483.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL053PA2]
 gi|315081283|gb|EFT53259.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL078PA1]
 gi|315083481|gb|EFT55457.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL027PA2]
 gi|315087167|gb|EFT59143.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA3]
 gi|315089337|gb|EFT61313.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL072PA1]
 gi|315099243|gb|EFT71219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL059PA2]
 gi|315100450|gb|EFT72426.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL046PA1]
 gi|315109042|gb|EFT81018.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL030PA2]
 gi|327329757|gb|EGE71513.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL096PA3]
 gi|327334275|gb|EGE75989.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL097PA1]
 gi|327446443|gb|EGE93097.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL013PA2]
 gi|327451969|gb|EGE98623.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL092PA1]
 gi|327454994|gb|EGF01649.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA3]
 gi|327457717|gb|EGF04372.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL083PA2]
 gi|328752198|gb|EGF65814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL020PA1]
 gi|328755172|gb|EGF68788.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA1]
 gi|328758348|gb|EGF71964.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL025PA2]
          Length = 733

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 278/707 (39%), Positives = 423/707 (59%), Gaps = 44/707 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|332675901|gb|AEE72717.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           266]
          Length = 749

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 278/709 (39%), Positives = 424/709 (59%), Gaps = 44/709 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 39  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 97

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 98  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 157

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 158 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 217

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 218 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 277

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 278 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 332

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 333 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 392

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 393 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 452

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 453 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 512

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 513 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 572

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 573 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 631

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 632 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 691

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L +
Sbjct: 692 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSLVL 740


>gi|258652431|ref|YP_003201587.1| polynucleotide phosphorylase/polyadenylase [Nakamurella
           multipartita DSM 44233]
 gi|258555656|gb|ACV78598.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nakamurella multipartita DSM
           44233]
          Length = 750

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 289/711 (40%), Positives = 425/711 (59%), Gaps = 42/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV A   + T++L+     +  K+  DFFPLT++ +ER YA
Sbjct: 18  FGTRTVRFETGRLAQQAAGAVAAYLDDDTMLLSATSVGKHPKEQFDFFPLTIDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F+   +NE QV+I VM  + +    V+
Sbjct: 78  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFTNGLRNEVQVVITVMALNPDDLYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----A 184
           ++ AASA+  +SGLPF GPV G +V  I+GQ+V  PR  E ++   D+ V+G       A
Sbjct: 138 AINAASASTQISGLPFSGPVAGVRVALIDGQWVAFPRHSELERAVFDMVVAGRLAGDDVA 197

Query: 185 VLMVELEANQLS------------EDVVLDAI----IFGHNECKPVIEAISKLAKMCAKE 228
           ++MVE EA   +            E+VV + +     F    C+   E   K AK  A+ 
Sbjct: 198 IMMVEAEATTATVGLVAGGAVAPTEEVVAEGLEAAKPFLRVLCQAQNELAGKSAKPVAEF 257

Query: 229 PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           P+    ++  F+ +E   S  + + L ++     K  R   +D +K ++    S+  +  
Sbjct: 258 PLFPAYQEDAFAAVENVASDELAQALTIAG----KQDRDAAVDAVKARVYEQLSATFAG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ + F  +  K+VR  +L  KVR+DGR    +R + A+VG L R HGS+LF RG+T
Sbjct: 313 RESELGNAFRSVTKKLVRQRVLKDKVRIDGRGLTDIRTLGAEVGYLPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLAPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGIAMGL
Sbjct: 433 RALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGL 492

Query: 467 VKD---GDD------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           V D    +D      ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++
Sbjct: 493 VSDTVTAEDGTSSVQYVALTDILGAEDAFGDMDFKVAGTRQFVTALQLDTKLDGIPSEVL 552

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA+  R  IL+ M + + ++   + E  PR+  + +P D+I  VIG  GK+I  I
Sbjct: 553 RGALVQARDARFTILDVMHEAI-DAPDPMSENAPRITTIKVPVDKIGEVIGPKGKMINSI 611

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            EQTGA + I+DDGT+ ++      ++AA ++I SI +  +P+V + + G VVK   FGA
Sbjct: 612 TEQTGADIAIEDDGTIFVSGPDGGAVQAAIDIINSIANPQLPKVGERFLGTVVKTTAFGA 671

Query: 636 FVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FV     RDGLVHIS+L S +R+AK  DVV  GD + V++++ D RGKI L
Sbjct: 672 FVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGDKLQVEIVEIDARGKISL 722


>gi|38234048|ref|NP_939815.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564774|sp|Q6NGP1|PNP_CORDI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|38200310|emb|CAE49995.1| guanosine pentaphosphate synthetase/ polyribonucleotide
           nucleotidyltransferase [Corynebacterium diphtheriae]
          Length = 755

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 429/723 (59%), Gaps = 48/723 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DG+V  TY   +T++LAT       ++G DFFPLTV+ +ER 
Sbjct: 29  DFGKRTIRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 87

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  + +    
Sbjct: 88  YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSVNPQDMYD 147

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSG 180
           VV++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ +Q   +L V+G
Sbjct: 148 VVAINGASAATQLSGLPVSGPVGGVRMALIADDAHPKGQWIAFPTHEQHEQALFELVVAG 207

Query: 181 ----------TQD--AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISK 220
                     T D  A++MVE  A +   D V           +  G    KP IE + +
Sbjct: 208 RIVSKKQGKKTVDDVAIMMVEAGATEQVVDRVKAGAPAPTESVVAEGLEAAKPFIEVLCR 267

Query: 221 ----LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
               LA+  AKE    P+     D  +  +E+++S+ ++  L +             +++
Sbjct: 268 AQAGLAERAAKETQEFPLFPPYTDVVYDAVEKKVSKKLRSLLTIKSKQDRDEATNAYMEE 327

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           ++  +++   S+  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V 
Sbjct: 328 IEADLIAQLGSDDEAAASKAIRAAYNAVMKKIVRHMILTEHFRIDGRGVTDIRDLGVEVD 387

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+      ++ HYNF P +TGE  R
Sbjct: 388 LIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPATSKRYIHHYNFPPYSTGETGR 447

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L +
Sbjct: 448 VGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLYN 507

Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D
Sbjct: 508 AGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTRQFITALQLD 567

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL QA   R  IL+ M++V+ E+  ++ ++ PR+  + +P ++I  V
Sbjct: 568 TKLDGIPSEVLAQALSQANDARNTILDTMAEVI-ETPDEMSDYAPRITAITVPVNKIGEV 626

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYK 624
           IG  GK I  I E+TGA ++I++DGTV ++++S A  EAA E I +I +  +P+V + + 
Sbjct: 627 IGPKGKTINSITEETGANISIEEDGTVYVSAASGAAAEAAIEKINAIANPQLPKVGERFL 686

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G VVK   FGAFV     RDGLVHIS+L   +R+ K  DVV  GD + V++LD D+RGKI
Sbjct: 687 GTVVKTTAFGAFVSLLPGRDGLVHISKLGGGKRIEKVEDVVNVGDKLEVEILDIDNRGKI 746

Query: 684 KLS 686
            L+
Sbjct: 747 SLA 749


>gi|319950925|ref|ZP_08024802.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
 gi|319435418|gb|EFV90661.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
          Length = 753

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 291/733 (39%), Positives = 426/733 (58%), Gaps = 59/733 (8%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETGR+A+Q+ G+V+A   + T++L+     +  KD  DFFPLTV+ +ER Y
Sbjct: 24  DFGRREVRFETGRLAKQAAGSVVAYLDDDTMLLSATTAGKHPKDHFDFFPLTVDVEERMY 83

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+ + IL  R+IDR +RP F+   +NE QV++ VM  D +    V
Sbjct: 84  AAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFADGVRNEVQVVVTVMSLDPKDLYDV 143

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG- 180
           V++ AASA+  LSGLPF GPV G +V  I       GQ+V  P  ++ +G+  D+ V+G 
Sbjct: 144 VAINAASASTQLSGLPFSGPVGGVRVALIPTAADPAGQWVAFPTSEQLEGAVFDMVVAGR 203

Query: 181 -------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK--------LAKMC 225
                     A++MVE EA     D V++ I  G     P  E +++        +A++C
Sbjct: 204 VVGSGDDADVAIMMVEAEAT----DNVIEKIAGGAQ--APTEEVVAQGLEAAKPFIAELC 257

Query: 226 AKEPIVIDSKDFSKLEEEM----------------SQMIKEDLRVSCFIPEKYVRCKQID 269
           A +  +  +   +  E  +                   + E +R++    +K  R    D
Sbjct: 258 AAQQALATAAPGTPREFPLFPPYADDAYAAVAEVAETKLAEIMRIA----DKQEREVATD 313

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
           +LK  ++   +   +    GEI + F+ +  K+VR  +L    R+DGR    +R +SA+V
Sbjct: 314 ELKASVLDELADRFAD-RLGEIGAAFKSLTKKIVRQRILTDHFRIDGRGVRDIRALSAEV 372

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
            ++ R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  
Sbjct: 373 EVIPRAHGSALFERGETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETG 432

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+
Sbjct: 433 RVGSPKRREIGHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLL 492

Query: 450 DAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+
Sbjct: 493 NAGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTGMFVTALQL 552

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D K+ GI   ++  AL QA+  RL IL+ M++ + E   +L  F PR+  + +P D+I  
Sbjct: 553 DTKLDGIPSEVLAGALTQAREARLTILDVMAEAIDEPD-ELSPFAPRIIAIKVPVDKIGE 611

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY 623
           VIG  GK+I  I E+TGA V+I+DDGTV I ++     +AA + I +I +  +P+V + +
Sbjct: 612 VIGPKGKMINSITEETGASVSIEDDGTVYIGATDGESAQAAIDKINAIANPQLPKVGERF 671

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G VVK   FGAF+     RDGLVHIS+L   +RV K  DVV  GD + V++ D D+RGK
Sbjct: 672 LGTVVKTAPFGAFLSLLPGRDGLVHISKLGGGKRVGKVEDVVNVGDKMQVEIADIDNRGK 731

Query: 683 IKLSMKVVDQNTG 695
           I L     D + G
Sbjct: 732 ISLVPVGEDSDNG 744


>gi|314954342|gb|EFS98748.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL027PA1]
          Length = 733

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/707 (39%), Positives = 423/707 (59%), Gaps = 44/707 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPENPRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|295131021|ref|YP_003581684.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|291376503|gb|ADE00358.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|313773552|gb|EFS39518.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL074PA1]
 gi|313831348|gb|EFS69062.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL007PA1]
 gi|313834958|gb|EFS72672.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL056PA1]
 gi|314974222|gb|EFT18318.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL053PA1]
 gi|314976667|gb|EFT20762.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL045PA1]
 gi|314984307|gb|EFT28399.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA1]
 gi|315095362|gb|EFT67338.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL038PA1]
 gi|327328376|gb|EGE70138.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327444160|gb|EGE90814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL043PA2]
 gi|327444959|gb|EGE91613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL043PA1]
 gi|328760033|gb|EGF73613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL099PA1]
          Length = 733

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/709 (39%), Positives = 423/709 (59%), Gaps = 44/709 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAIS--------KLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +         KL K     P+ 
Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAVKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L +
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSLVL 724


>gi|300743980|ref|ZP_07073000.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
           M567]
 gi|300380341|gb|EFJ76904.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
           M567]
          Length = 753

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 287/713 (40%), Positives = 421/713 (59%), Gaps = 43/713 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           R ++ ETGR+A+Q+ G+VL T   ET +L+     +S ++G DFFPLTV+ +ER YA GK
Sbjct: 35  RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE RP    IL +R+IDR +RP F+K  +NE QV++ V+  + +   +  ++ 
Sbjct: 95  IPGSFFRREGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIYNTFAIN 154

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183
           AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G        ++D
Sbjct: 155 AASASTALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGSED 214

Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISK----LAKMCAKEP 229
            A++MVE EA   S  ++ +          +  G    KP I A+ K    L +   K  
Sbjct: 215 VAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPFIAALCKAQVDLVERAGKPD 274

Query: 230 IVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
           + +    F    E++   +K    E L     I  K  R     +L+ +++   + E   
Sbjct: 275 LELPY--FGGHGEDVDAAVKDFAGERLVEVYSIAGKQDREAAAAELEAELMEALTGEGKE 332

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E   E+   F  +    VR  +L ++VR+DGR    +R ++A+V +L R HGS++F R
Sbjct: 333 FEERANEVSVAFAALTKHTVRQRILTEQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 392

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 393 GETQIMGVTTLNMLKLEQQLDSLYPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 452

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 453 LAERALTPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 512

Query: 464 MGLVKD---GDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D   G+  +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 513 MGLVSDEVNGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 572

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL+ ++  + ++  ++ EF PR+  + +P  +I  VIG  GK+I  I E
Sbjct: 573 ALTQAREARLHILDVLTAAI-DAPDEMSEFAPRIISVKVPVAKIGEVIGPKGKMINQIQE 631

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I ++     EAAR  I +I +  VPEV + Y G VVKV DFGAF+
Sbjct: 632 DTGADISIEDDGTVFIGATDGPSAEAARTAINAIANPQVPEVGERYLGTVVKVTDFGAFI 691

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 692 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLS 744


>gi|313811605|gb|EFS49319.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL083PA1]
          Length = 733

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/716 (38%), Positives = 426/716 (59%), Gaps = 44/716 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAIS--------KLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +         KL K     P+ 
Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAVKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L +   + +T
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSLVLASDEDDT 731


>gi|311898696|dbj|BAJ31104.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Kitasatospora setae KM-6054]
          Length = 736

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 290/717 (40%), Positives = 422/717 (58%), Gaps = 36/717 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKQPKEHFDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV++ VM  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVVTVMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ-----D 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELESAVFDMVVAGRALPDGDV 196

Query: 184 AVLMVELEAN----QL----SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
           A++MVE EA     QL    +E    + +  G    KP I+ +       AK+     + 
Sbjct: 197 AIMMVEAEATTKTIQLVEGGAEAPTEEVVAAGLEAAKPFIKVLCAAQAQLAKQ-AAKPTG 255

Query: 236 DFSKLEE-------EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           +F +  E        ++  +K++L  +  I  K  R  ++D +K         E     E
Sbjct: 256 EFPRFLEYQDDVLAALTSAVKDELAKALTIAGKQERQNELDRIKGVAADKLLPEFEG-RE 314

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ 
Sbjct: 315 KEISAAYNALTKKIVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA RA
Sbjct: 375 LGVTTLNMLRMEQQLDTLSPETRRRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           I PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+ 
Sbjct: 435 ILPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLIS 494

Query: 469 ---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
              DG+  ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++  AL+QA
Sbjct: 495 QEIDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFITALQLDTKLDGIPASVLAAALKQA 554

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  RLHIL+ M++ + ++  ++    PR+  + IP D+I  VIG  GK+I  I E TGA+
Sbjct: 555 KDARLHILDVMNEAI-DAPDEMSPNAPRIITIKIPVDKIGEVIGPKGKMINQIQEDTGAE 613

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           + I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV     
Sbjct: 614 ITIEDDGTIYIGAADGPAAEAARSTINQIANPTMPEVGERYLGTVVKTTTFGAFVSLMPG 673

Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L + VV+   G
Sbjct: 674 KDGLLHISQIRKLAGGKRVENVEDVLAVGAKVQVEIAEIDPRGKLSL-IPVVEGEEG 729


>gi|295395380|ref|ZP_06805579.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971702|gb|EFG47578.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 749

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 283/714 (39%), Positives = 418/714 (58%), Gaps = 41/714 (5%)

Query: 16  LKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           ++  TGR+A+Q+ G   AT  GET +L+     ++ ++G DFFPLTV+ +ER YA GKIP
Sbjct: 27  IEFGTGRLAQQAAGCATATLDGETTLLSATAVSKNPREGFDFFPLTVDVEERMYAAGKIP 86

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           G + RRE RPT + IL  R+IDR +RP F K  +NE Q+++ V+    +     +++ AA
Sbjct: 87  GSFFRREGRPTTDAILACRLIDRPLRPSFVKGLRNEVQIVVTVLSMHPDHLYDTLAINAA 146

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDAVLMVE 189
           S +  L GLPF GP+ G ++  I+ Q+V  P   + +    D+ V+G       A++MVE
Sbjct: 147 SMSTQLGGLPFSGPIGGVRIALIDDQWVAFPNYSQLENAVFDMAVAGRVVGDDVAIMMVE 206

Query: 190 LEANQLSEDVVL--------DAIIFGHNECKPVIE----AISKLAKMCAKEPIVIDSKDF 237
            EA++ S D++         + +  G    KP I     A  +LA   AK     + + F
Sbjct: 207 AEASENSWDLIQGGARKPTEEVVAEGLEAAKPFIRELVRAQQELADRVAKP--TAEFELF 264

Query: 238 SKLEEEMSQMIKE---DLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
              E+++ + ++E   D +   F I +K  R    D+L   +++    E     E EIV 
Sbjct: 265 KDYEDDVYEAVRELAWDKQTQNFQIADKQEREAAGDELLDSLLNDLG-EKFEGRESEIVG 323

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
               +  ++VR  +L ++VR+DGR  + +R +SA+  +L R HGS+LF RG+TQ + V T
Sbjct: 324 ALNSMTKEIVRKRILTERVRIDGRGIKDIRPLSAETNILPRVHGSALFERGETQIMGVTT 383

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L   + EQ +DSL+      ++ HYNF P +TGE  R+G+P RREIGHG LA RA+ PV+
Sbjct: 384 LDMLKMEQQIDSLTPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVI 443

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---- 469
           P    FPY +R VSE   S+GS+SM +VC S+++L+ AGVP+  PVAGIAMGLV D    
Sbjct: 444 PSREDFPYAIRQVSEALGSNGSTSMGSVCASTMSLLSAGVPLRAPVAGIAMGLVSDVIET 503

Query: 470 ----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                  +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++  AL+QA+
Sbjct: 504 DQGKQTAYAALTDILGAEDAFGDMDFKVAGTKDFITAIQLDTKLDGIPASVLAAALKQAR 563

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             RL IL+ ++  ++E   ++    PR+  + IP D+I  VIG  GK+I  I E TGA +
Sbjct: 564 EARLTILDVLTAAIAEPG-EMAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQEDTGADI 622

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           +I+DDGTV I ++     EAAR  I +I +  VPEV + Y G VVK+M FGAFV     +
Sbjct: 623 SIEDDGTVFIGATDGPAAEAARSAINAIANPQVPEVGERYLGTVVKLMSFGAFVSLTPGK 682

Query: 644 DGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           DGL+HIS+L      +RV    DV+  G  + V++   DDRGK+ L   V+D++
Sbjct: 683 DGLLHISELKKLNGGKRVEDAEDVLGVGQKIQVEITKVDDRGKLSLQ-PVIDED 735


>gi|255325195|ref|ZP_05366301.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297760|gb|EET77071.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 748

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 287/718 (39%), Positives = 421/718 (58%), Gaps = 44/718 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R L+ ETG++ARQ+DG+V  TY   +T++LAT       ++G DFFPLTV+ +ER 
Sbjct: 28  DFGTRTLRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 86

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ VM  D E    
Sbjct: 87  YAAGKIPGSFFRREGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYYD 146

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSLDLFV--- 178
           VV++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L   V   
Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206

Query: 179 ----SGTQD--AVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISK 220
                G +D  A++MVE  A     + + D        A+  G    KP I    EA + 
Sbjct: 207 RIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNG 266

Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           LA   AKE    P+     D  F+ +E+  ++ +++ L +           + ++ +++K
Sbjct: 267 LADRAAKETQEFPLFPAYGDDVFAAVEKAATKKLEKLLTIPGKQERDDATNEYMEQVEEK 326

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           ++  F     +    +I   +  +  ++VR  +L +  R+DGR    +RD+S +V L+ R
Sbjct: 327 LLDQFEDLEEADASKQIRGAYNALMKQIVRQKILSEGFRIDGRGVTDIRDLSVEVDLVPR 386

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+P
Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPFSTGETGRVGSP 446

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP
Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVP 506

Query: 455 ISKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           +  PVAGIAMGL    V   + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ 
Sbjct: 507 LKAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLD 566

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++  AL+QA+  R  IL  M++V+ ++  ++    P++  + IP ++I  +IG  
Sbjct: 567 GIPSKVLAQALEQARDARSTILETMAEVI-DTPDEMSGLAPKITSVKIPVNKIGELIGPK 625

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628
           GK I  I E+TGA V+I+DDGTV +++++    +AA + + SI +  +P+V + + G VV
Sbjct: 626 GKTINQITEETGADVSIEDDGTVYVSAATGEAADAAIDKVNSIANPQLPKVGERFLGTVV 685

Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           K + FGAFV     RDGL+HIS L   ER+ K  DV+  GD V V++ D D+RGKI L
Sbjct: 686 KTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVINVGDKVQVEIADIDNRGKISL 743


>gi|34557289|ref|NP_907104.1| polynucleotide phosphorylase/polyadenylase [Wolinella succinogenes
           DSM 1740]
 gi|81833066|sp|Q7M9I4|PNP_WOLSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34483005|emb|CAE10004.1| NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes]
          Length = 736

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 282/736 (38%), Positives = 431/736 (58%), Gaps = 71/736 (9%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           EI    +    E G IA+Q++G+VL   G++V+LA+V Y+   +  +DF PLTV Y E++
Sbjct: 7   EIALPNKTETFEFGAIAKQANGSVLYRCGKSVLLASVCYESDERVKEDFLPLTVQYIEKS 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GK PGG+++RES+P + E L SR+IDRS+RPLF K Y + TQ+ + V+    ++   
Sbjct: 67  YAAGKFPGGFIKRESKPGDFETLTSRIIDRSLRPLFPKGYAHPTQITVMVLSAQNDADLQ 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            +++ AASAAL +S +P   PV G ++  ING  V+NP   E  + +LDLFVSG ++ +L
Sbjct: 127 TMALNAASAALFVSDIPLRKPVHGLRIGKINGALVVNPTTKEMSESTLDLFVSGVEEDLL 186

Query: 187 MVELEANQLSEDVVLDAIIFG-----------------HNECKP---------------- 213
           M+E+    L+ D + +    G                  NE K                 
Sbjct: 187 MIEMRT--LASDEINNTCFVGDCGMVAASASDILKIHQANEMKEEELLEALELAKTSIKK 244

Query: 214 ----VIEAISKLAK---MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                +EA + LAK   +   +P +  S+ +  ++E  +  IKE +        +  + +
Sbjct: 245 ASACYVEAFTPLAKPDAILELKPDITSSEIYQYIKENHAIAIKEAIT-------RMAKSE 297

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVR 323
           +  DLK+      SSE +  +E    +V+E +   + + VR ++L+++ R DGR  + VR
Sbjct: 298 RHSDLKRIAKEIASSERAQESEWSFEAVYETVGKYKREAVRALILEERRRADGRGLKEVR 357

Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFL 381
            I  Q  +L   H S+LF RG+TQA+VV TLG   D Q  + L+  G+ +  FM+HYNF 
Sbjct: 358 PIDIQTNILPNAHASALFTRGETQALVVATLGGDMDAQSYELLTEKGSSKERFMVHYNFP 417

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
             + GE   +GAP RRE+GHG LA+RA+ P + +      T+R+VSEI ES+GSSSMATV
Sbjct: 418 SFSVGEAGMVGAPGRRELGHGNLAKRALEPTIEEWG--AQTIRLVSEILESNGSSSMATV 475

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
           CG SLAL  AG+  +  VAG+AMGL+ + +   IL+DI G EDH G MDFK+AGT +GIT
Sbjct: 476 CGGSLALKAAGINTTALVAGVAMGLIVEAEKHAILTDIMGLEDHDGDMDFKIAGTSTGIT 535

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561
           AMQMD+K+GG+S  I+  AL QAK GR HIL  M K  SE  +   E  P ++I +I P 
Sbjct: 536 AMQMDIKLGGLSMEILKEALYQAKEGREHILGIMEKAQSEIIIN-DEILPSLQIFSINPG 594

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT------ 614
           +I ++IG  GK I+ I+E+    ++++ D+G VK+  S+  ++EAA+E I SI+      
Sbjct: 595 RIVDIIGQAGKTIKEIIERFEVAIDLNRDNGEVKVTGSNKQKVEAAKEHILSISNQEAPQ 654

Query: 615 -----DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                DV    +++KG+V K++DFGAF+      DGL+H+S++   R  +  +V+KEG+ 
Sbjct: 655 RVRVADVYSAGEVFKGKVKKIVDFGAFIELPKGGDGLLHVSKIVQHRDQRIDEVIKEGEE 714

Query: 670 VWVKLLDFDDRGKIKL 685
           + V++L   ++ K++L
Sbjct: 715 IEVQILSI-NKNKVEL 729


>gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
 gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
          Length = 710

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/689 (38%), Positives = 434/689 (62%), Gaps = 13/689 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L +ETG +A Q++G+ +     T ++ATVV     K G +F PL ++Y+E+  A GK
Sbjct: 15  GRTLSIETGYLACQANGSAVVRMANTSLIATVVVSTEEKKGVNFLPLNIDYREKYSAGGK 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE RP++ EIL  R++DR +RPLF K +  E Q++I+++ +D+   P  ++ +
Sbjct: 75  IPGGFIKREGRPSDEEILTMRLVDRLLRPLFPKIFYKEIQIMISLLSYDINVLPDGLAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
            AS A+ LSG+PF+GPV   ++  +   +++NP +++ + S +DL V G+ +++LMVE E
Sbjct: 135 VASTAVYLSGIPFKGPVSAVRIIRMKNLFIINPGIEDVKKSDIDLIVGGSINSILMVEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV---IDSKDFSKLEEEMSQMI 248
             ++SE  ++  I   H   K  I+A   L K   K+  +   I + +F  L+E+++ + 
Sbjct: 195 MKEVSEKEIMKIIKIAHFYIKRQIKAQINLLKKIKKKSKIDFNIKNNNFFYLKEKLNFLF 254

Query: 249 KEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            E +  +     +K +R K+I+ L   +   F ++H   +E EI  +F +I+ K++R ++
Sbjct: 255 FEKIYNIYKKFYKKKIRLKKINILLNNIKKIFFNDHIIIHENEIDIIFFEIKKKIIREII 314

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
             + +R+DGR  + +R+IS++V  L   HGS++F RG+TQA+  VTLG+  D   +D++ 
Sbjct: 315 CKENIRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVI 374

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
              +  F +HYNF P +TGE+  +   SRREIGHG LA+RA+  ++P     PYT+R+VS
Sbjct: 375 IQDKQKFYLHYNFPPFSTGEIKLLKGVSRREIGHGNLAQRALKNIIPFDN--PYTIRVVS 432

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGDEDH 485
           ++ ES+GSSSMATVC S+LALMDAG+PI +PV+GI+MGL+  K   + +ILSDI GDED+
Sbjct: 433 DVLESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIFNKFTGEALILSDILGDEDN 492

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           +G MDFK+ GT  G+TA QMD+KI GIS +I++  + +AK+G + I+N M   L+  R+ 
Sbjct: 493 IGDMDFKITGTKYGMTACQMDLKIYGISYDILLKTILKAKKGIIFIINNMLTTLNSPRIS 552

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAE 602
           L    P++    IP   I  VIG GGK+I+ I   T   + I++    G ++I   +  +
Sbjct: 553 LKPTAPKIYTFNIPKTFIGAVIGPGGKIIQEIQYSTETNLKIEEKENLGKIEILGKNYNK 612

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A E I+ I   P++ KIYK +V  +  FG FV      +GL+HIS++S +++    +
Sbjct: 613 IKDAIEKIKYIVFFPKIGKIYKAKVKYIKPFGVFVELSKGIEGLLHISEISWKKLTNLEN 672

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            +K G+ + VK L  +++ GKIKLS K++
Sbjct: 673 YLKIGNFINVKYLGKNNKNGKIKLSHKIL 701


>gi|315106802|gb|EFT78778.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL030PA1]
          Length = 733

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/707 (39%), Positives = 422/707 (59%), Gaps = 44/707 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S   +    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 557 KEARTAILEVMNEAI-DSPDGMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|227833344|ref|YP_002835051.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184330|ref|ZP_06043751.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|257096677|sp|C3PH09|PNP_CORA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|227454360|gb|ACP33113.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 756

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 288/717 (40%), Positives = 423/717 (58%), Gaps = 42/717 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V     E T++L+T       ++G DFFPLTV+ +ER Y
Sbjct: 35  DFGTRTIRFETGQLARQAGGSVTTYLDEDTMLLSTTTASNQPREGFDFFPLTVDVEERMY 94

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+  D E    V
Sbjct: 95  AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMDPEEYYDV 154

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSLDLFV---- 178
           V++  ASA+  LSGLP  GPV G ++  I       GQ+V  P  ++ + +L   V    
Sbjct: 155 VAINGASASTQLSGLPVSGPVGGVRMALIADDKHPKGQWVAFPNNEQHERALFEMVVAGR 214

Query: 179 ---SGTQD--AVLMVELEAN-QLSEDVVLDA-------IIFGHNECKPVI----EAISKL 221
               G +D  A++MVE  A   ++E +   A       +  G    KP I    EA + L
Sbjct: 215 IVKKGRKDDVAIMMVEAGAGVNVAERIKEGAPAPQESTVAEGLEAAKPFIKSLCEAQAGL 274

Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           A+  AKE    P+     D  ++ +E+  S+ +++ L +           + ++ ++ K+
Sbjct: 275 AERAAKETQEFPLFPPYGDDVYAAVEKAASKKLEKLLTIPGKQDRDDATNEYMEQVEAKL 334

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +  F     +    +I + F  +   +VRT +L +  R+DGR    +RD+  +V L+ R 
Sbjct: 335 IEDFDDLDEADASKQIRNAFNAVMKDIVRTKILTEGFRIDGRGVTDIRDLGVEVDLIPRA 394

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+P 
Sbjct: 395 HGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPYSTGETGRVGSPK 454

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP+
Sbjct: 455 RREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPL 514

Query: 456 SKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGL    V   + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G
Sbjct: 515 KAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDG 574

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++  AL+QA+  R  IL+ MS+V+ ES  ++    PR+  + IP ++I  +IG  G
Sbjct: 575 IPSHVLADALEQARDARAAILDTMSEVI-ESPDEMSGLAPRITSVTIPVNKIGELIGPKG 633

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K I  I E+TGA V+I++DGTV I++++    +AA + + SI +  +P+V + + G VVK
Sbjct: 634 KTINAITEETGADVSIEEDGTVYISAATGEAADAAIDRVNSIANPQLPKVGERFLGTVVK 693

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            + FGAFV     RDGLVHIS+L   ER+ K  DVV  GD + V++ D D+RGKI L
Sbjct: 694 TVAFGAFVSLTPGRDGLVHISKLGGDERIEKVEDVVNVGDKIQVEIADIDNRGKISL 750


>gi|282854618|ref|ZP_06263953.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J139]
 gi|282582200|gb|EFB87582.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J139]
 gi|314923878|gb|EFS87709.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL001PA1]
 gi|314966065|gb|EFT10164.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL082PA2]
 gi|314981898|gb|EFT25991.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA3]
 gi|315090762|gb|EFT62738.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA4]
 gi|315095011|gb|EFT66987.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL060PA1]
 gi|327328056|gb|EGE69825.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL103PA1]
          Length = 733

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/707 (39%), Positives = 422/707 (59%), Gaps = 44/707 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GPV G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPVGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRALADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYRALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|118466887|ref|YP_882853.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           104]
 gi|187610285|sp|A0QIW5|PNP_MYCA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118168174|gb|ABK69071.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mycobacterium avium 104]
          Length = 748

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 289/723 (39%), Positives = 419/723 (57%), Gaps = 54/723 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    E ++L+     +S K+  DFFPLTV+ +ER YA
Sbjct: 13  FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 73  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPNDLYDVL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ ++   D+ V+G +      
Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDGADG 192

Query: 184 ---AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAIS--------K 220
              A++MVE EA               +E VV      G    KP IE +         K
Sbjct: 193 PDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQ----GLEAAKPFIEVLCTAQQELADK 248

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            A+  +  P   D  D   +   ++ +  ++L  +  I  K  R  + D+LK ++++  +
Sbjct: 249 AARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDELKAEVLARLA 306

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            E     E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+L
Sbjct: 307 -ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSAL 365

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIG
Sbjct: 366 FQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 425

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVA
Sbjct: 426 HGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 485

Query: 461 GIAMGLVKD------GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           GIAMGLV D      GD        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D 
Sbjct: 486 GIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 545

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI   ++  AL QAK  RL IL  M++ + E   ++  + PRV  + +P D+I  VI
Sbjct: 546 KLDGIPSQVLAGALSQAKDARLTILEVMAEAIDEPD-EMSPYAPRVTTIRVPVDKIGEVI 604

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625
           G  GK+I  I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G
Sbjct: 605 GPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 664

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
            VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI 
Sbjct: 665 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 724

Query: 685 LSM 687
           L +
Sbjct: 725 LVL 727


>gi|333024088|ref|ZP_08452152.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
           sp. Tu6071]
 gi|332743940|gb|EGJ74381.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
           sp. Tu6071]
          Length = 738

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 284/712 (39%), Positives = 420/712 (58%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227
           A++MVE EA + +  +V         + +  G +  KP I+ + K              +
Sbjct: 197 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 257 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRALTKAVVRERVIKDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL    VK    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|296117686|ref|ZP_06836270.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969417|gb|EFG82658.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 779

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 283/730 (38%), Positives = 429/730 (58%), Gaps = 67/730 (9%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R +  ETG++ARQ+DG+V   + + T++L TV      ++G DFFPLTV+ +ER Y
Sbjct: 58  DFGTRTITFETGQLARQADGSVTTYFDDDTMLLTTVTASNQPREGLDFFPLTVDVEERMY 117

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE+RP+   IL  R+IDR +RP F K  +NE QVI  V+  D      V
Sbjct: 118 AAGKIPGSFFRREARPSTEAILACRLIDRPLRPTFVKGLRNEVQVINTVLSLDPAEYYDV 177

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           +++  +SAA  LSGLP  GPV G ++  +       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 178 IAINGSSAATQLSGLPVSGPVGGVRMALLADDKHPEGQWVAFPNAEQHERALFEMVVAGR 237

Query: 182 ------------QDAVLMVELEAN-QLSEDVVLDA-------IIFGHNECKPVI----EA 217
                         A++MVE  A   + E V   A       +  G    KP I    EA
Sbjct: 238 IVSRKNKGKNVDDVAIMMVEAGAGVHVHERVAEGAPAPQESTVAAGLEAAKPFIKTLCEA 297

Query: 218 ISKLAKMCAKEPIVIDSKDFS---------------KLEEEMSQMIKEDLRVSCFIPEKY 262
            + LA+  AKE     +K+F                K E+++S++    + ++       
Sbjct: 298 QAGLAERAAKE-----TKEFQLFPPYADEVYDAVARKAEKKLSKL----MTIAAKQERDE 348

Query: 263 VRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETV 322
                +++++ +++  F+ + +S    +I + +  +  ++VR  +L +  R+DGR +E +
Sbjct: 349 ATNAHMEEVEAQLLEVFTEDDASK---QIRAAYNQLMKEIVREKILTEGFRIDGRAAEDI 405

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           RD+ A++GL+ R HGS+LF RG+TQ + V TL   + EQ +DSL+  +   ++ HYNF P
Sbjct: 406 RDLGAEIGLIPRVHGSALFERGETQILGVTTLDMLKMEQTIDSLTPVESKRYIHHYNFPP 465

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            +TGE  R+G+P RREIGHG LA RA+ PV+P   QFPYT+R VSE   S+GS+SM +VC
Sbjct: 466 YSTGETGRVGSPKRREIGHGALAERALLPVIPPREQFPYTIRQVSEALGSNGSTSMGSVC 525

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDS 498
            S+++L +AGVP+  PVAGIAMGLV    DG++ F+ L+DI G ED  G MDFKVAGT  
Sbjct: 526 ASTMSLYNAGVPLKAPVAGIAMGLVSGEVDGEERFVALTDILGAEDAFGDMDFKVAGTSD 585

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            ITA+Q+D K+ GI   ++  AL QA+  R  IL+ M++ + +   ++    P++  + I
Sbjct: 586 YITALQLDTKLDGIPSEVLANALSQARNAREEILDIMAEGI-DGPDEMSPLAPKITSIKI 644

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--V 616
           P  +I  +IG  GK I  I E+TGA V+I+DDGTV ++++S    +AA E + +I +  +
Sbjct: 645 PVSKIGELIGPKGKTINTITEETGADVSIEDDGTVYVSATSGEAADAAIEKVNAIANPQL 704

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLL 675
           P+V + + G VVK + FGAFV     RDGL+HIS L   ER+ K  DVV  GD + V++ 
Sbjct: 705 PKVGERFLGTVVKTVAFGAFVSITPGRDGLIHISNLGGDERIEKVEDVVNVGDKIQVEIA 764

Query: 676 DFDDRGKIKL 685
           D D+RGKI L
Sbjct: 765 DIDNRGKISL 774


>gi|314929746|gb|EFS93577.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL044PA1]
 gi|328907604|gb|EGG27368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium sp. P08]
          Length = 735

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/707 (39%), Positives = 421/707 (59%), Gaps = 44/707 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 202 VEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E+   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EVSGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPETSRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M+  + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TG  
Sbjct: 557 KEARTAILEVMNDAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGTN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas
           denitrificans DSM 1251]
 gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 721

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 292/719 (40%), Positives = 423/719 (58%), Gaps = 56/719 (7%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           + ++I+   +  +   G +A+Q++GA     G TV+LATVV D +     DF PLTV Y 
Sbjct: 3   YDIKIDLKNKNEEYSFGEVAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLPLTVQYI 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE++ ++ E L SR++DRS+RPLF K + + TQ+ I V   D ES
Sbjct: 63  EKAYAAGKIPGGFFKRETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKES 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++ AASAAL +S +     V   +V  I+G+ +LNP L E D+ +LDL++SGT++
Sbjct: 123 DLQVLALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTKE 182

Query: 184 AVLMVELEA-------NQLSEDVVLD-----AIIFGH-NECKPVIEAISKLAKMCAKEPI 230
            +LM+E+ +         L  D ++D     AII  H +   P  E I+ LAK    E +
Sbjct: 183 DLLMIEMRSKGGIKVDTNLMIDPLMDPTLSSAIIATHVSNAVPEDELITILAKA---EEL 239

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPE------KYVRCKQIDDLKKKMVSYFSSEHS 284
           + ++   +  EE   +  KE   + C          KYVR     D+K  M     SE S
Sbjct: 240 LFETN--AMYEEMFKEFKKETSPLECKAHALNEEMLKYVRSNHYSDIKSAMNQMAKSERS 297

Query: 285 S---------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
           +               W+E E+  V E ++ + VR  +L+ +VR DGR    +R IS   
Sbjct: 298 TALRQLRKKIIITKEEWDEVELKDVIESVKKEQVRGQILNDRVRADGRALNEIRPISIST 357

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGE 387
            +L   H S LF RG TQA+VV+T+G  +D Q  ++L+  GTQ  +FM+HYNF   + GE
Sbjct: 358 NVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGTQNENFMVHYNFPGFSVGE 417

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
            S +    RRE+GHG LA+RA+ P++    Q   T+R+VSEI ES+GSSSMATVCG  +A
Sbjct: 418 ASPIMGTKRRELGHGNLAKRALEPIVNLEGQ---TVRLVSEILESNGSSSMATVCGGYMA 474

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           L  A +  S  +AGIAMG+V +GD + ILSDI G EDH G +DFKV G+  GITAMQMD+
Sbjct: 475 LRAADIETSDTIAGIAMGMVSEGDKYAILSDIMGLEDHDGDLDFKVTGSKDGITAMQMDI 534

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNV 566
           K+GGIS NI+  AL QAK GR HI+N M +  +E  +   +   P  +   I P  I ++
Sbjct: 535 KLGGISLNILKEALYQAKEGRAHIINIMQE--AEKNISFNDGVLPSTDFFHINPSFIGDI 592

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK---- 621
           IG  GK IR I+E+    ++ID  DG VK+   S + ++AARE I  I   P++ K    
Sbjct: 593 IGQAGKTIREIIEKFEVAIDIDKKDGKVKVTGKSKSGVQAAREHIEGIVSTPKMPKIEYK 652

Query: 622 ---IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
              I+KG V K+++FGAF+      DGL+HIS++S +RV K SD++KEG+ + V++L+F
Sbjct: 653 VGDIHKGIVKKIVEFGAFIELPDGVDGLLHISKISDQRVEKVSDILKEGEEINVEILEF 711


>gi|41408989|ref|NP_961825.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|81413535|sp|Q73VX0|PNP_MYCPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|41397348|gb|AAS05208.1| GpsI [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 757

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 289/723 (39%), Positives = 419/723 (57%), Gaps = 54/723 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    E ++L+     +S K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPNDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ ++   D+ V+G +      
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDGADG 201

Query: 184 ---AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI--------SK 220
              A++MVE EA               +E VV      G    KP IE +         K
Sbjct: 202 PDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQ----GLEAAKPFIEVLCTAQQELADK 257

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            A+  +  P   D  D   +   ++ +  ++L  +  I  K  R  + D+LK ++++  +
Sbjct: 258 AARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDELKAEVLARLA 315

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            E     E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+L
Sbjct: 316 -ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSAL 374

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIG
Sbjct: 375 FQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 434

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVA
Sbjct: 435 HGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 494

Query: 461 GIAMGLVKD------GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           GIAMGLV D      GD        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D 
Sbjct: 495 GIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 554

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI   ++  AL QAK  RL IL  M++ + E   ++  + PRV  + +P D+I  VI
Sbjct: 555 KLDGIPSQVLAGALSQAKDARLTILEVMAEAIDEPD-EMSPYAPRVTTIRVPVDKIGEVI 613

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625
           G  GK+I  I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G
Sbjct: 614 GPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 673

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
            VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI 
Sbjct: 674 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 733

Query: 685 LSM 687
           L +
Sbjct: 734 LVL 736


>gi|84496941|ref|ZP_00995795.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
           HTCC2649]
 gi|84383709|gb|EAP99590.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
           HTCC2649]
          Length = 807

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 282/726 (38%), Positives = 430/726 (59%), Gaps = 47/726 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV A   E T++L+T    +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAGGAVSAYLDEDTMLLSTTTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I+V+  + ++   V+
Sbjct: 78  AGKIPGSFFRREGRPSTEAILTCRLIDRPLRPTFKKGLRNEVQVVISVLALNPDAQYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG------TQ 182
           ++ AASA+  +SGLPF GP+   +V  IN Q+V  P+  D ++ + D+ V+G      + 
Sbjct: 138 AINAASASTQISGLPFSGPIGAVRVSLINDQWVAFPQFSDIERSTFDMVVAGRIVDDGSD 197

Query: 183 DAVLMVELEANQLSEDVVL---------DAIIFGHNECKPVIEAISKLA--------KMC 225
            A++MVE EA + + ++V          D +  G    K  I+ + +          K  
Sbjct: 198 VAIMMVEAEATEQTWNLVKNEGKTAPTEDVVAQGLEAAKGFIKVLCEAQADLAAKAAKPI 257

Query: 226 AKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-- 281
            + PI +D +D  ++ +E +    +  D   +  I  K  R  ++D++K  M +  +   
Sbjct: 258 QEFPIFLDYEDDAYAAVEAK----VGSDAAAALQIAGKQEREDRLDEIKDSMKAALAGTD 313

Query: 282 -EHSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
            E  S+   E E+ + ++ +Q K++R  +L  KVR+DGR    +R +SA+V +L R HGS
Sbjct: 314 GESGSFAGREKELSAAYKSVQKKLIRERILKDKVRIDGRGLADIRALSAEVEVLPRVHGS 373

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           ++F RG+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RRE
Sbjct: 374 AIFERGETQIMGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRRE 433

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           IGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  P
Sbjct: 434 IGHGALAERALMPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAP 493

Query: 459 VAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           VAGIAMGLV    DG   +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 494 VAGIAMGLVSAEVDGVTQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPA 553

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL QA+  RLHIL+ M++ +     ++  F PRV  + +P D+I  VIG  GK+I
Sbjct: 554 EVLGSALTQAREARLHILDVMNEAIDVPD-EMSPFAPRVISVQVPVDKIGEVIGPKGKMI 612

Query: 575 RGIVEQTGAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             I ++TGA+++I+DDGT+ I ++    AE   A     +   +PE+ + + G VVK   
Sbjct: 613 NQIQDETGAQISIEDDGTIYIGATDGPSAEAARAAINAIANPQMPEIGERFLGTVVKTTT 672

Query: 633 FGAFVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           FGAF+     +DGL+HIS+    +  +R+    DV+  G  V V+L + D RGK+ L   
Sbjct: 673 FGAFISLLPGKDGLLHISEVRKLVGGKRIDAVEDVLAVGQKVQVELKEIDPRGKLSLGAV 732

Query: 689 VVDQNT 694
           + D ++
Sbjct: 733 LADDDS 738


>gi|318062386|ref|ZP_07981107.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
           SA3_actG]
 gi|318078519|ref|ZP_07985851.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
           SA3_actF]
          Length = 738

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 286/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +  +V         + +  G    KP I+ +        +K AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLCKAQADLAAKAAKATGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 257 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 313 ---REKEISAAYRALTKAVVRERVIRDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 370 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 429

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 430 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 489

Query: 464 MGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL    VK    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 490 MGLISETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 549

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 550 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 608

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV
Sbjct: 609 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 668

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 669 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|315104236|gb|EFT76212.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA2]
          Length = 733

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/707 (39%), Positives = 422/707 (59%), Gaps = 44/707 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFFPLTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ +
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDVVAINS 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GPV G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPVGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRALADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 202 VEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYRALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M++ + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TGA 
Sbjct: 557 KEARTAILEVMNEAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGAN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|254776111|ref|ZP_05217627.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 748

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 289/723 (39%), Positives = 419/723 (57%), Gaps = 54/723 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    E ++L+     +S K+  DFFPLTV+ +ER YA
Sbjct: 13  FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 73  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPNDLYDVL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ ++   D+ V+G +      
Sbjct: 133 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDGADG 192

Query: 184 ---AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAIS--------K 220
              A++MVE EA               +E VV      G    KP IE +         K
Sbjct: 193 PDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQ----GLEAAKPFIEVLCTAQQELADK 248

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            A+  +  P   D  D   +   ++ +  ++L  +  I  K  R  + D+LK ++++  +
Sbjct: 249 AARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDELKAEVLARLA 306

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            E     E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+L
Sbjct: 307 -ETYEGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSAL 365

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIG
Sbjct: 366 FQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIG 425

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVA
Sbjct: 426 HGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVA 485

Query: 461 GIAMGLVKD------GDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           GIAMGLV D      GD        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D 
Sbjct: 486 GIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDT 545

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI   ++  AL QAK  RL IL  M++ + E   ++  + PRV  + +P D+I  VI
Sbjct: 546 KLDGIPSQVLAGALSQAKDARLIILEVMAEAIDEPD-EMSPYAPRVTTIRVPVDKIGEVI 604

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKG 625
           G  GK+I  I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G
Sbjct: 605 GPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLG 664

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
            VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI 
Sbjct: 665 TVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKIS 724

Query: 685 LSM 687
           L +
Sbjct: 725 LVL 727


>gi|302522241|ref|ZP_07274583.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
 gi|302431136|gb|EFL02952.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
          Length = 739

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 286/712 (40%), Positives = 422/712 (59%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 78  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 138 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAK 227
           A++MVE EA + +  +V         + +  G    KP I+ +        +K AK   +
Sbjct: 198 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLCKAQADLAAKAAKATGE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 258 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 313

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 314 ---REKEISAAYRALTKAVVRERVIRDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 370

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 371 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 430

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 431 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 490

Query: 464 MGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL    VK    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 491 MGLISETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 550

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 551 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 609

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV
Sbjct: 610 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 669

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 670 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721


>gi|295836212|ref|ZP_06823145.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
 gi|295825905|gb|EDY46178.2| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
          Length = 739

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 282/712 (39%), Positives = 420/712 (58%), Gaps = 45/712 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 78  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 138 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227
           A++MVE EA + +  +V         + +  G +  KP I+ + K              +
Sbjct: 198 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK----KKMVSYFSSEH 283
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K    +K++  F    
Sbjct: 258 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-- 313

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF R
Sbjct: 314 ---REKEISAAYRALTKAVVRERVIKDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFER 370

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 371 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 430

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIA
Sbjct: 431 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 490

Query: 464 MGLVKDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+ +       ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 491 MGLISETHGGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAA 550

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I E
Sbjct: 551 ALKQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQE 609

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV
Sbjct: 610 DTGAEITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFV 669

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 670 SLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721


>gi|1588265|prf||2208281A 100RNP protein
          Length = 779

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 279/702 (39%), Positives = 407/702 (57%), Gaps = 60/702 (8%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           ++V+I +  R + +ETG I RQ+ GAV  T GET+V  TV       +  DFFPL+VNYQ
Sbjct: 76  YSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQ 135

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER  A G+  GG+ +RE RP +NE+L+ R+IDR +R    K + +ETQ++  V+ +D   
Sbjct: 136 ERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGLH 195

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P  +++ AA  A+ LS L    PV G +V  + G+Y++NP  +E + S LDL V+GT  
Sbjct: 196 PPDALAVTAAGIAVALSELFHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLVVAGTDS 255

Query: 184 AVLMVE-----------LEANQLSEDVV-------------------LDAIIFGHNECKP 213
           A+LM+E           LEA ++ +D V                   +DAI     E   
Sbjct: 256 AILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGKPKMIDAIKLPPPELYK 315

Query: 214 VIEAIS--KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEK----YV 263
            +E I+  +L      +  +   K    LEE++  ++ +       V+  IPE     YV
Sbjct: 316 HVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVGKSVATVIPETLPDLYV 375

Query: 264 RCKQIDDLKKKMVSYFSSEHSS----------WNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
             ++ +++           H            ++E ++  VF++  +K +R  +++   R
Sbjct: 376 DEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKETTSKYLRKRIVEGGRR 435

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT-QRN 372
            DGR SE VR I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G  +  
Sbjct: 436 SDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDESK 495

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            F + Y+F P   GE  R+GAPSRREIGHG LA RA+ P+LP   +FPYT+R+ S ITES
Sbjct: 496 RFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYTVRVESNITES 555

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486
           +GSSSMA+VCG SLAL+DAGVP+  P+AGIAMG+V D  +F      +ILSDI+G ED  
Sbjct: 556 NGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDAS 615

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAG    +TA QMD+K+GGI+ ++M  AL QAK GR  IL EMSK L      L
Sbjct: 616 GDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSKCLPPPSKTL 675

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605
             + P + +M + P+++  +IG GGK +R I+E TG + ++  DDGTVKI +  L  +E 
Sbjct: 676 SIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQDDGTVKITARDLESLEK 735

Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGL 646
           ++ MI ++T VP +  IY+   +K +  +GAFV     R+G 
Sbjct: 736 SKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGF 777


>gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 992

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 272/701 (38%), Positives = 421/701 (60%), Gaps = 26/701 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E   R +  ETG+IAR ++G+V+    +T VL+TV   ++    +DF PLTV+YQE+ 
Sbjct: 56  EFEVGSRVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKT-DSPRDFLPLTVDYQEKQ 114

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q++ +V+  D +  P 
Sbjct: 115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMASVLSSDGKQDPD 174

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +++  A+SAALMLS +P+ GP+   ++  I GQ+V+NP +DE   S L+L  + T+D  +
Sbjct: 175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241
           M+++++ ++SE  +  A+   H E    ++   +LA+   K+       ++  K   K+ 
Sbjct: 235 MIDVQSREISEKDLAAALRLAHPEAIKYLDPQIRLAEKAGKQKKEYKLSMLSEKTLEKVT 294

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +  +  I+       +   K+ R + +D++ K +   F  E    +   +    + ++ K
Sbjct: 295 DLAATRIESVFTDPSY--GKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKK 352

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ M+    R+DGR  + VR I  +   L   HGS+LF RGDTQ +  VTLG   + Q
Sbjct: 353 VVRSRMISDGFRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQ 412

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  +  FM+HY+F P  T EV + G  +RRE+GHG LA +A+  VLP    FPY
Sbjct: 413 SLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPY 472

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474
           T+RI SE+  SDGS+SMA+VCG S+ALMDAG+P+   VAG+++GL+ D D       D+ 
Sbjct: 473 TVRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYR 532

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           I++DI G EDHLG MDFK+AGT +G+TA+Q+D+K  GI  +I+  +L+ A+  RL IL+ 
Sbjct: 533 IVTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDH 592

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + ++  R Q G ++PR+       D +R++IG  G + R I E+TGA+++I D+GT+ 
Sbjct: 593 MERNINSPRAQDGAYSPRLATFKYTNDSLRSLIGPMGVLKRKIEEETGARLSI-DNGTLT 651

Query: 595 IASSSLAEIEAAREMI-----RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           I + +   +E A+E +     R I     V  +YKG V  + ++GAFV F G + GL+H+
Sbjct: 652 IVAKNQDVMEKAQEKVDFIIGREIV----VGGVYKGTVTSIKEYGAFVEFSGGQQGLLHM 707

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S+LS E V+K SDV+  G  +    ++ D RG IKLS K +
Sbjct: 708 SELSHEPVSKVSDVLHIGQYITTMCIETDVRGNIKLSRKAM 748


>gi|184201241|ref|YP_001855448.1| polynucleotide phosphorylase/polyadenylase [Kocuria rhizophila
           DC2201]
 gi|226702657|sp|B2GKI3|PNP_KOCRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183581471|dbj|BAG29942.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Kocuria rhizophila DC2201]
          Length = 751

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 285/720 (39%), Positives = 422/720 (58%), Gaps = 46/720 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +    E T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  YGKRVVRFETGRLARQAAGSAMVYIDEETSMLSATAVGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV++ VM    +   + V
Sbjct: 78  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFGKGLRNEVQVVVTVMSIAPDEIYNTV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NG--QYVLNPRLDE-DQGSLDLFVSG--- 180
           ++ AAS +  LSG+PF+GPV G ++  +   NG  Q++  P+  + +    D+ V+G   
Sbjct: 138 AINAASMSTTLSGMPFQGPVGGVRMALMAEENGGHQWIAFPKHSQLENAVFDMAVAGRVV 197

Query: 181 -TQD-----AVLMVELEANQLSEDVVL---------DAIIFGHNECKPVIEAISKL-AKM 224
            T+D     A++MVE EA   + +++          + +  G    KP I+A+    A +
Sbjct: 198 TTKDGGQDVAIMMVEAEATDNAWELIKGQGAVAPSEELVAEGLEASKPFIKALCDAQADL 257

Query: 225 CAKE-PIVIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
            A+     +D   F    ++ +Q ++    E +     I  K  R    D+L    ++  
Sbjct: 258 AARNRKPELDLPRFGGFGDDAAQAVEQFVGERMAQVYSIAGKQEREAATDELHHDTLAEL 317

Query: 280 SSEHSSWNEG---EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           + E   + EG   E+   ++ +  + VR  +L  KVR+DGR    +R +SA+V +L R H
Sbjct: 318 TGEGKPF-EGRADEVNGAYQALTKQTVRQRILKDKVRIDGRGLTDIRQLSAEVDVLPRVH 376

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS+LF RG+TQ + V TL   + EQ +DSLS  +   ++ HYNF P +TGE  R+G+P R
Sbjct: 377 GSALFERGETQIMGVTTLNMLKMEQQIDSLSPVKHKRYIHHYNFPPYSTGETGRVGSPKR 436

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL +AGVP+ 
Sbjct: 437 REIGHGALAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLALYNAGVPLR 496

Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI
Sbjct: 497 APVAGIAMGLVSDTVDGEVQYAALTDILGAEDALGDMDFKVAGTREFVTAIQLDTKLDGI 556

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +++  AL QA+  RL+IL+ ++  + ++  ++ EF PRV  + +P  +I  VIG  GK
Sbjct: 557 PASVLASALTQAREARLYILDVLTSAI-DAPDEMSEFAPRVISVTVPVSKIGEVIGPKGK 615

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630
           +I  I E TG  ++I+DDGTV I ++     EAAR  I +I +  VPEV + Y G VVK 
Sbjct: 616 MINQIQEDTGTDISIEDDGTVYIGATDGPSAEAARSAINAIANPQVPEVGERYLGTVVKT 675

Query: 631 MDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
             FGAFV     +DGL+HIS++      +RV +  DV+  G  V V++   DDRGK+ L+
Sbjct: 676 TTFGAFVSLTPGKDGLLHISEMRQLNDDKRVNEVDDVLSVGQKVQVEITKVDDRGKLSLA 735


>gi|296171645|ref|ZP_06852859.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894006|gb|EFG73769.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 751

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 285/714 (39%), Positives = 423/714 (59%), Gaps = 45/714 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    E ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTILSLDPNDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----A 184
           ++ AASA+  +SGLPF GP+ G +V  I+G +V  P +++ ++   D+ V+G +     A
Sbjct: 142 AINAASASTQISGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDDDVA 201

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAI----SKLAKMCAKE 228
           ++MVE EA               +E VV +    G    KP I  +     +LA   AK 
Sbjct: 202 IMMVEAEATDKVIELVEGGAQAPTETVVAE----GLEAAKPFINVLCTAQQELADAAAKP 257

Query: 229 PIVIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
             V +   F   +E++    + +  ++L  +  I  K  R  + D+LK ++++  + E  
Sbjct: 258 --VGEYPTFPDYQEDVYYSVAAVATDELAKALTIGGKAERDARTDELKAEVLTRLA-ETY 314

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 315 EGREKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERG 374

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 375 ETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL 434

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAM
Sbjct: 435 AERALLPVLPGVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAM 494

Query: 465 GLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GLV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   +
Sbjct: 495 GLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQV 554

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QAK  RL IL  M++ + ++  ++  + PRV  + +P D+I  VIG  GK+I  
Sbjct: 555 LAGALAQAKDARLTILEVMAEAI-DAPDEMSPYAPRVTTIKVPVDKIGEVIGPKGKIINA 613

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E+TGA+++I+DDGTV + ++     +AA + I +I +  +P V + + G VVK  DFG
Sbjct: 614 ITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLGTVVKTTDFG 673

Query: 635 AFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           AFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L +
Sbjct: 674 AFVSLLPGRDGLVHISKLGRGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLVL 727


>gi|116669995|ref|YP_830928.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter sp. FB24]
 gi|187470967|sp|A0JUV8|PNP_ARTS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116610104|gb|ABK02828.1| Polyribonucleotide nucleotidyltransferase [Arthrobacter sp. FB24]
          Length = 746

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/713 (39%), Positives = 416/713 (58%), Gaps = 41/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    E T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQV----DYINGQYVLNPRLDEDQGSLDLFV-----SG 180
           ++ A+S +  LSGLPF GP+ G +V    D    Q+V  P+  + + S+   V     +G
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVADEHGSQWVAFPKHSQLENSVFNMVVAGRVAG 197

Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI--------SKLAK 223
              A++MVE EA   S +++ +          +  G    KP I+A+        ++ AK
Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCDAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+ +D +D +    E +   K        I +K  R    D LK  + S  + + 
Sbjct: 258 PTVEFPVFLDYEDDAYAAVEAAAAEKLAAVFQ--IADKQERDAASDQLKDDVTSSLAGQF 315

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F  +   VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F R
Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAGIA
Sbjct: 435 LAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL  ++  + ++  +L EF PRV  + IP D+I  VIG  GK+I  I E
Sbjct: 555 ALKQAREARLHILEVINSAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +++    +AAR  I +I +  VPE+ + Y G VVK   FGAF+
Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFI 673

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS+L      +RV    DVV  G  + V++   DDRGK+ LS
Sbjct: 674 SLTPGKDGLLHISELRKIAGGKRVDNVEDVVSVGQKIQVEITKIDDRGKLSLS 726


>gi|302537281|ref|ZP_07289623.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
 gi|302446176|gb|EFL17992.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
          Length = 739

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 285/714 (39%), Positives = 418/714 (58%), Gaps = 49/714 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  VM  + +    V+
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATVMALNPDHLYDVI 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--TQD--- 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIKGQWVAFPTHTELEDAVFDMVVAGRALEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE------- 228
           A++MVE EA + +        E    + +  G    KP I+ + K     A +       
Sbjct: 197 AIMMVEAEATEQTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLCKAQADLAAKAAKPEGE 256

Query: 229 -PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSS 281
            P+ +D +   ++ LE    Q ++ +L  +  I  K  R  ++D +K+    K++  F  
Sbjct: 257 FPVFLDYEQDVYAALE----QAVRGELAQALTIAGKQDREAELDRVKEIAAEKLLPAFEG 312

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
                 E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF
Sbjct: 313 -----REKEISAAYRSLTKALVRERVIKDKVRIDGRGLTDIRTLAAEVEAIPRVHGSALF 367

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGH
Sbjct: 368 ERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGH 427

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAG
Sbjct: 428 GALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAG 487

Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGL+    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++
Sbjct: 488 IAMGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVL 547

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG  GK+I  I
Sbjct: 548 AAALTQARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQI 606

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            E TGA++ I+DDGT+ I ++     EAAR  I +I +  +PEV + Y G VVK   FGA
Sbjct: 607 QEDTGAEITIEDDGTIYIGAADGPAAEAARSTINAIANPTMPEVGERYLGTVVKTTTFGA 666

Query: 636 FVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FV     +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 667 FVSLMPGKDGLLHISQIRKLAGGKRVENVEDVLAVGTKVQVEIAEIDQRGKLSL 720


>gi|296129365|ref|YP_003636615.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
 gi|296021180|gb|ADG74416.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
          Length = 744

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/711 (38%), Positives = 427/711 (60%), Gaps = 42/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T++L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREGFDFFPLTVDVEERQYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF K  +NE QV++ V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QD 183
           ++ AAS +  +SGLPF GPV   ++  I+GQ+V  PR  E ++ + ++ V+G        
Sbjct: 138 AINAASISTQISGLPFSGPVGAVRIALIDGQWVAFPRYTERERATFEIVVAGRVVEGGDV 197

Query: 184 AVLMVELEANQLSEDVV--------LDAIIF-GHNECKPVIEAI----SKLAKMCAKE-- 228
           A+ M+E EA + S +++         +A++  G    KP I+A+     +LA   AKE  
Sbjct: 198 AIAMIEAEAPEKSWNLIRNEGGVAPTEAVVAEGLEASKPFIKALVTAQMELAAQSAKETQ 257

Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
             P   D +   ++ +E+  ++ +   L+++     K  R  ++D++K ++ +  +++  
Sbjct: 258 TFPTFPDYQPDAYAAVEQAATERLSAALQIAG----KQERENRLDEIKAEVQAELAAQFE 313

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + +  +Q +++R  +L    R+DGR    +R +SA+V +L RTHGS+LF RG
Sbjct: 314 G-REKEVSAAYRSVQKQLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRTHGSALFERG 372

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL     EQ +D+L+   R  +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 373 ETQILGVTTLNMLRMEQQLDTLAPETRKRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL 432

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RAI PVLP   +FPY +R VSE   S+GS+SM +VC ++L+L++AGVP+  PVAGIAM
Sbjct: 433 AERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAM 492

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  A
Sbjct: 493 GLVSDTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGA 552

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  RL IL+ +++ +     ++  F PRV  + +P D+I  VIG  GK+I  I E+
Sbjct: 553 LTQAKEARLAILDVIAEAIDVPD-EMSPFAPRVISVKVPVDKIGEVIGPKGKMINQIQEE 611

Query: 581 TGAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA ++I+DDGTV I ++    AE   A     +   +PE+ + + G VVK   FGAF+ 
Sbjct: 612 TGADISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEIGERFVGTVVKTTTFGAFIS 671

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
               +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 LSPGKDGLLHISQIRKLVGGKRVENVEDVLAVGQKVQVEIGEIDPRGKLSL 722


>gi|120403341|ref|YP_953170.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           vanbaalenii PYR-1]
 gi|187610302|sp|A1T7L4|PNP_MYCVP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119956159|gb|ABM13164.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 754

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/720 (39%), Positives = 426/720 (59%), Gaps = 40/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ E GR+A+Q+ GAV+A    ET++L+     +S K+  DFFPLT++ +ER YA
Sbjct: 22  FGTRTIRFEAGRLAQQAAGAVVAYLDDETMLLSATTASKSPKEHFDFFPLTIDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLDPKDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183
           ++ AASA+  +SGLPF GPV G +V  I+GQ+V  P +++ ++   D+ V+G +      
Sbjct: 142 AINAASASTQISGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRKVGDDHK 201

Query: 184 --AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLAKMC 225
             A++MVE EA +   ++V           +  G    KP I  +            K  
Sbjct: 202 DVAIMMVEAEATENVIELVAGGAGAPTETVVAEGLEAAKPFIAVLCDAQAALAGAAGKET 261

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
           A+ P+  D  D   +   ++ +  E L  +  I  K  R  + D++K ++++  + +++ 
Sbjct: 262 AEYPLFPDYGD--DVYYSVASVATEALSEALTIAGKNERNDRTDEIKVEVLNRLAEQYAG 319

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E EI + +  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+
Sbjct: 320 -REKEIGAAYRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAVVPRAHGSALFERGE 378

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 379 TQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 438

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 439 ERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 498

Query: 466 LVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           LV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   ++
Sbjct: 499 LVSDDIEIDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQVL 558

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK  R+ IL  M++ + ++  ++  + PR+  + +P D+I  VIG  GK+I  I
Sbjct: 559 AGALAQAKDARITILEVMAEAI-DTPDEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSI 617

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            E+TGA ++I+DDGTV + +S+    +AA + I +I +  +P+V + + G VVK  DFGA
Sbjct: 618 TEETGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKVGERFLGTVVKTTDFGA 677

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           FV     RDGLVHIS+L   +R+ K  DV K GD + V++ D D+RGKI L +   +  T
Sbjct: 678 FVSLLPGRDGLVHISKLGRGKRINKVEDVAKVGDKLRVEIADIDNRGKISLVLVAEESET 737


>gi|152965434|ref|YP_001361218.1| polynucleotide phosphorylase/polyadenylase [Kineococcus
           radiotolerans SRS30216]
 gi|187610277|sp|A6W815|PNP_KINRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151359951|gb|ABS02954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kineococcus radiotolerans
           SRS30216]
          Length = 746

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 287/712 (40%), Positives = 420/712 (58%), Gaps = 40/712 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +  R ++ ETGR+A+Q+ G+  A Y  GE+ +L+     +S KD  DFFPLTV+ +ER+Y
Sbjct: 18  FGTRTIRFETGRLAKQAAGSA-AVYLDGESFLLSATTAGKSPKDQFDFFPLTVDVEERSY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+++VM    + +  V
Sbjct: 77  AAGKIPGSFFRREGRPSTEAILTCRLIDRPLRPSFVKGLRNEVQVVVSVMALHPDDAYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180
           V++  AS +  LSGLPF GP+ G ++  I+GQ+V  PR  E ++   D+ V+G       
Sbjct: 137 VAINVASLSTQLSGLPFSGPIGGVRIALIDGQWVAFPRYSELERAVFDMVVAGRVVTTAD 196

Query: 181 -TQD-AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLAKMCAKEP 229
            +QD A++MVE EA + S +++ D          +  G    KP I  + +     A   
Sbjct: 197 GSQDVAIMMVEAEATEGSWNLIKDQGATAPTEEVVAAGLEAAKPFIAELVRAQAEVAATA 256

Query: 230 IVIDS--KDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
               +    F   ++++ Q + E    DL  +  I  K  R  +ID++K+ + +  +   
Sbjct: 257 AKPTAAFPTFPDYQDDVYQAVFEAASADLTAALQIGGKQDRETRIDEVKEAVKAQLADAF 316

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           +   E E+ + +  +Q  ++R  +L   VR+DGR    +R +SA+V +L R HGS+LF R
Sbjct: 317 AG-REKEVSAAYRSVQKALIRQRVLKDGVRIDGRGLADIRTLSAEVEVLPRVHGSALFER 375

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 376 GETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 435

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGIA
Sbjct: 436 LAERALVPVLPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAAVAGIA 495

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+ D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 496 MGLISDTVDGETRYAALTDILGAEDAFGDMDFKVAGTKEFVTAIQLDTKLDGIPASVLAG 555

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL+ M++ + ++  ++    PR+  + +P D+I  VIG  GK+I  I E
Sbjct: 556 ALTQARDARLHILDVMAEAI-DAPDEMSPTAPRIITVKVPVDKIGEVIGPKGKMINQIQE 614

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +      EAAR  + +I +  +PEV + Y G VVK   FGAFV
Sbjct: 615 DTGADISIEDDGTVFIGAVDGPSAEAARAAVNAIANPTMPEVGERYLGTVVKTTTFGAFV 674

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQL      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 675 SLMPGKDGLLHISQLRKLSGGKRVDNVEDVVAVGQKVQVEIAEIDPRGKLSL 726


>gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 713

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/691 (39%), Positives = 414/691 (59%), Gaps = 80/691 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+TYA GKIPGGY++RE
Sbjct: 37  KVAKQATGAVLMKQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKTYAAGKIPGGYVKRE 95

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 96  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 155

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E + S LDL+V+G +D +LM+E+ A        
Sbjct: 156 DIPMKAPVCGVRIGRIDGNFILNPNNEELKNSTLDLYVAGVKDELLMIEMRALPDQKENE 215

Query: 193 -------------------NQLSEDVVLDA-------IIFGHNECKPVIEAISKLAKMCA 226
                              N+L+ED +L+A       I+ G N  K       K +++  
Sbjct: 216 IFIEAPYADVLTQTTSQNMNELNEDEILEALNLAQKAILNGSNAYKEAFSKHRKNSQIEL 275

Query: 227 K------EPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           K      E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 276 KNEIEYPEILAFVENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 323

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  I++    I+ K++R  +LDK  R DGR    VR IS +  +L   HGS 
Sbjct: 324 IAK--DWSEESILNTLAKIKRKLIREQILDKGKRADGRSLNEVRPISIETNILPNAHGSC 381

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 382 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPINERFMVNYNFPGFSVGEASPIKAPG 439

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 440 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 497

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + +   IL+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 498 LKLVAGVAMGLIFEDNKHAILTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 557

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 558 TLKQALYQAKEGRIHILNIMEEAAKEIVVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 616

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-----------DVP--EVNK 621
            I+E+ G  +++D + G VKIA +   +I+AA++ I +IT           D+   E+ +
Sbjct: 617 EIIEKFGVSIDLDREKGEVKIAGNQNEQIKAAKDYIINITSSQKGTKKNSKDISGFELGQ 676

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            ++G V K+  FGAFV      DGL+H S++
Sbjct: 677 EFQGIVKKIAPFGAFVELKNGVDGLLHNSKI 707


>gi|54025857|ref|YP_120099.1| polynucleotide phosphorylase/polyadenylase [Nocardia farcinica IFM
           10152]
 gi|81374135|sp|Q5YSV6|PNP_NOCFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|54017365|dbj|BAD58735.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Nocardia farcinica IFM 10152]
          Length = 764

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 292/729 (40%), Positives = 428/729 (58%), Gaps = 46/729 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A    ET++L+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 30  YGTRTVRFETGRLARQAAGSVVAYLDDETMLLSATTAGKTPKDQFDFFPLTVDVEERMYA 89

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    VV
Sbjct: 90  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVLSLDPKDLYDVV 149

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---------NGQYVLNPRLDEDQGS-LDLFVS 179
           ++ AASA+  ++GLPF GPV G +V  I          GQ+V  P +++ +G+  D+ V+
Sbjct: 150 AINAASASTQIAGLPFSGPVGGVRVALIPDQGANSAGGGQWVAFPTVEQLEGAVFDMVVA 209

Query: 180 G----TQD-AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISK----LA 222
           G    + D A++MVE EA +   ++V        +A++  G    KP I  + +    LA
Sbjct: 210 GRVVESGDVAIMMVEAEATEKVIELVEGGAQAPTEAVVAEGLEAAKPFIARLCRAQQDLA 269

Query: 223 KMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           ++ AK  E   +       + E +    + +L  +  I  K  R ++ID++K  ++   +
Sbjct: 270 ELAAKPTEEFPLFPPYGPDVYEAVEGAAEAELGEALSIAGKQEREEKIDEIKLAVLDRLA 329

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            E  +  E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+L
Sbjct: 330 -EQFAGREKELGAAFRSVTKKLVRQRILTDGFRIDGRGLADIRALSAEVAVVPRAHGSAL 388

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RREIG
Sbjct: 389 FERGETQILGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIG 448

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 449 HGALAERALIPVLPSQEDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVA 508

Query: 461 GIAMGLVKD------GDD---FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           GIAMGLV D      G+    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 509 GIAMGLVSDTVTNDKGEQEVRYVALTDILGAEDAFGDMDFKVAGTREFVTALQLDTKLDG 568

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QA   R  IL+ M++ ++    ++  + PRV  + IP D+I  VIG  G
Sbjct: 569 IPSQVLAGALSQAHDARTTILDVMAEAIATPD-EMSPYAPRVTAIKIPVDKIGEVIGPKG 627

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           KVI  I E TGA ++I+DDGTV + ++    A+         +   +P+V + + G VVK
Sbjct: 628 KVINQITEDTGANISIEDDGTVFVGATDGPSAQAAIDAINAIANPQLPKVGERFLGTVVK 687

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
              FGAFV     RDGLVHIS+L   +RVAK  DVV  GD + V++ D D+RGKI  S+ 
Sbjct: 688 TTAFGAFVSLLPGRDGLVHISKLGNGKRVAKVEDVVNVGDKLRVEIADIDNRGKI--SLV 745

Query: 689 VVDQNTGKP 697
            VD+N  +P
Sbjct: 746 PVDENADEP 754


>gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 997

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/693 (39%), Positives = 410/693 (59%), Gaps = 14/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E   R +  ETG+IAR ++GAV+ +  ET VL+TV   +     +DF PLTV+YQE+ 
Sbjct: 61  EFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTVASSKG-DAARDFLPLTVDYQEKH 119

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           +A G IP  ++RRE  P E E+L  R+IDR IRPLF   + +E QV+ +V+  D +  P 
Sbjct: 120 FAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 179

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V++  A SAALMLS +P+ GP+   ++  I GQ+++NP +DE     L+L  + T+D  L
Sbjct: 180 VMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACTRDKTL 239

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M++++A ++SE  +  A+   H E    +E   +LA    K          S +  E  +
Sbjct: 240 MIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDITFEKVR 299

Query: 247 MIKEDLRVSCFIPE---KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
            + E    + F      K+ R + +D + + +      E    +   +  V + ++ +VV
Sbjct: 300 NLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTVRKEVV 359

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++ + +R+DGR    VR +  + G L   HGSSLF RGDTQ +  VTLG   D Q +
Sbjct: 360 RRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRL 419

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           DSL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP   +FPYT+
Sbjct: 420 DSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEEFPYTV 479

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIIL 476
           RI SE+  SDGS+SMATVCG S+ALMDAG+P+ + VAGI++GLV + D       D+ IL
Sbjct: 480 RINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIKDYRIL 539

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+   L+ A RGRL IL+ M 
Sbjct: 540 TDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRME 599

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++  R Q    +PR+  +    D +R ++G  G + R I E+TGA++++  DGT+ + 
Sbjct: 600 QEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISV-SDGTLTVV 658

Query: 597 SSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           + + + ++  +E +  I     E+  IYKG V  V ++GAFV F G + GL+HIS+LS E
Sbjct: 659 AKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHISELSHE 718

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            V + SDVV  G  + +  +  D RG IKLS+K
Sbjct: 719 PVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLK 751


>gi|313836842|gb|EFS74556.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA2]
 gi|314972179|gb|EFT16276.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA3]
          Length = 735

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/707 (38%), Positives = 420/707 (59%), Gaps = 44/707 (6%)

Query: 16  LKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           ++ E G +A+Q+DG+  A Y  G+T++L+     ++ +D  DFF LTV+ +ER YA G+I
Sbjct: 23  VRFEAGLLAQQADGSA-AVYLDGDTMLLSATTAAKTPRDSIDFFLLTVDVEERMYAAGRI 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           PG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      VV++ A
Sbjct: 82  PGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDVVAINA 141

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----QDAVLM 187
           AS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G        A++M
Sbjct: 142 ASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGDVAIMM 201

Query: 188 VELEANQLSEDVVL--------DAIIFGHNECKPVIEAI--------SKLAKMCAKEPIV 231
           VE E+   +  +V         + +  G    KP I+ +        +KL K     P+ 
Sbjct: 202 VEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETYDFPVF 261

Query: 232 IDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            D +D  ++ +EE+ +  +    +++     K  R +   +LK ++ +  + E     E 
Sbjct: 262 KDYEDDVYAAVEEKAADELSRIEQIAA----KLERQEAESELKARIKAELA-ETFPEREA 316

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E+   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+TQ +
Sbjct: 317 EVSGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL 376

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 377 GVSTLNMLDMEQKLDTLSPETSRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAERAL 436

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL+ +
Sbjct: 437 IPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSE 496

Query: 470 GDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA
Sbjct: 497 TDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGALKQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R  IL  M+  + +S  ++    PR+  + IP D+I  VIG  GK+I  I + TG  
Sbjct: 557 KEARTAILEVMNDAI-DSPDEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDTGTN 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ I + +    E+AR MI +I +  +PEV + Y G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSLLPG 675

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 676 KDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 719

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/693 (39%), Positives = 412/693 (59%), Gaps = 82/693 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 305 ITK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDSQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 ILKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            IVE+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGPKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            + ++G V K+  FGAFV      DGL+H S++
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKI 690


>gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera]
          Length = 905

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/693 (39%), Positives = 410/693 (59%), Gaps = 14/693 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E   R +  ETG+IAR ++GAV+ +  ET VL+TV   +     +DF PLTV+YQE+ 
Sbjct: 10  EFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTVASSKG-DAARDFLPLTVDYQEKH 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           +A G IP  ++RRE  P E E+L  R+IDR IRPLF   + +E QV+ +V+  D +  P 
Sbjct: 69  FAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V++  A SAALMLS +P+ GP+   ++  I GQ+++NP +DE     L+L  + T+D  L
Sbjct: 129 VMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACTRDKTL 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M++++A ++SE  +  A+   H E    +E   +LA    K          S +  E  +
Sbjct: 189 MIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDITFEKVR 248

Query: 247 MIKEDLRVSCFIPE---KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
            + E    + F      K+ R + +D + + +      E    +   +  V + ++ +VV
Sbjct: 249 NLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTVRKEVV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++ + +R+DGR    VR +  + G L   HGSSLF RGDTQ +  VTLG   D Q +
Sbjct: 309 RRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRL 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           DSL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP   +FPYT+
Sbjct: 369 DSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEEFPYTV 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIIL 476
           RI SE+  SDGS+SMATVCG S+ALMDAG+P+ + VAGI++GLV + D       D+ IL
Sbjct: 429 RINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIKDYRIL 488

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+   L+ A RGRL IL+ M 
Sbjct: 489 TDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRME 548

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++  R Q    +PR+  +    D +R ++G  G + R I E+TGA++++  DGT+ + 
Sbjct: 549 QEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISV-SDGTLTVV 607

Query: 597 SSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           + + + ++  +E +  I     E+  IYKG V  V ++GAFV F G + GL+HIS+LS E
Sbjct: 608 AKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHISELSHE 667

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            V + SDVV  G  + +  +  D RG IKLS+K
Sbjct: 668 PVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLK 700


>gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis
           thaliana]
 gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 991

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/697 (38%), Positives = 418/697 (59%), Gaps = 18/697 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E   R +  ETG+IAR ++G+V+    ET VL+TV   ++    +DF PLTV+YQE+ 
Sbjct: 56  EFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKT-DSPRDFLPLTVDYQEKQ 114

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q++ +V+  D +  P 
Sbjct: 115 YAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSSDGKQDPD 174

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           +++  A+SAALMLS +P+ GP+   ++  I GQ+V+NP +DE   S L+L  + T+D  +
Sbjct: 175 ILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTM 234

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241
           M+++++ ++SE  +  A+   H E    ++   +LA+   K+       ++  K   K+ 
Sbjct: 235 MIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSDKTLEKVA 294

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +  +  I+       +   K+ R + +D++ K +   F  E    +   +    + ++ K
Sbjct: 295 DLAATRIESVFTDPSY--GKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKK 352

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ M+    R+DGR  + VR I  +   L   HGS+LF RGDTQ +  VTLG   + Q
Sbjct: 353 VVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQ 412

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  +  FM+HY+F P  T EV + G  +RRE+GHG LA +A+  VLP    FPY
Sbjct: 413 SLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPY 472

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474
           T+RI SE+  SDGS+SMA+VCG S+ALMDAG+P+   VAG+++GL+ D D       D+ 
Sbjct: 473 TIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYR 532

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           I++DI G EDHLG MDFK+AGT  G+TA+Q+D+K  GI  +I+  +L+ A+  RL IL+ 
Sbjct: 533 IVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDH 592

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + ++  R Q G ++PR+  +    D +R +IG  G + R I  +TGA+++I D+GT+ 
Sbjct: 593 MERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSI-DNGTLT 651

Query: 595 IASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I + +   +E A+E +  I      V  +YKG V  + ++GAFV F G + GL+H+S+LS
Sbjct: 652 IVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELS 711

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            E V+K SDV+  G  +    ++ D RG IKLS K +
Sbjct: 712 HEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKAL 748


>gi|311739667|ref|ZP_07713502.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305483|gb|EFQ81551.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 748

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 286/718 (39%), Positives = 421/718 (58%), Gaps = 44/718 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R L+ ETG++ARQ+DG+V  TY   +T++LAT       ++G DFFPLTV+ +ER 
Sbjct: 28  DFGTRTLRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 86

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ VM  D E    
Sbjct: 87  YAAGKIPGSFFRREGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYYD 146

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSLDLFV--- 178
           VV++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L   V   
Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206

Query: 179 ----SGTQD--AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISK 220
                G +D  A++MVE  A     + + D         +  G    KP I    EA + 
Sbjct: 207 RIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEATVAEGLEAAKPFIKTLCEAQNG 266

Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           LA+  AKE    P+     D  F+ +E+  ++ +++ L +           + ++ +++K
Sbjct: 267 LAERAAKETQEFPLFPAYGDDVFAAVEKAAAKKLEKLLTIPGKQERDDATNEYMEQVEEK 326

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           ++  F     +    +I   +  +  ++VR  +L +  R+DGR    +RD+S +V L+ R
Sbjct: 327 LLDQFEDLEEADASKQIRGAYNALMKQIVRQKILSEGFRIDGRGVTDIRDLSVEVDLVPR 386

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+P
Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPFSTGETGRVGSP 446

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP
Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVP 506

Query: 455 ISKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           +  PVAGIAMGL    V   + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ 
Sbjct: 507 LKAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLD 566

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++  AL+QA+  R  IL  M++V+ ++  ++    P++  + IP ++I  +IG  
Sbjct: 567 GIPSKVLAQALEQARDARSTILETMAEVI-DTPDEMSGLAPKITSVKIPVNKIGELIGPK 625

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628
           GK I  I E+TGA V+I+DDGTV +++++    +AA + + SI +  +P+V + + G VV
Sbjct: 626 GKTINQITEETGADVSIEDDGTVYVSAATGEAADAAIDKVNSIANPQLPKVGERFLGTVV 685

Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           K + FGAFV     RDGL+HIS L   ER+ K  DV+  GD V V++ D D+RGKI L
Sbjct: 686 KTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVINVGDKVQVEIADIDNRGKISL 743


>gi|229490937|ref|ZP_04384772.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
           SK121]
 gi|229322327|gb|EEN88113.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
           SK121]
          Length = 756

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 296/717 (41%), Positives = 423/717 (58%), Gaps = 48/717 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    ET++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFV---- 178
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +D+ +    D+ V    
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIVSDENKTGQWVAFPTVDQLENAVFDMVVAGRV 204

Query: 179 -SGTQD----AVLMVELEA--NQLSE-----DVVLDAIIF-GHNECKPVIEAI------- 218
            SG+ D    A++MVE EA  N +++         +AI+  G    KP I  +       
Sbjct: 205 VSGSGDNADVAIMMVEAEATDNVIAKIADGAQAPTEAIVAEGLEAAKPFIARLCAAQAAL 264

Query: 219 -SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
            SK AK     P+    +D  F+ +E   S    E L  +  I  K  R  + D++K ++
Sbjct: 265 ASKAAKPTGDYPVFPAYQDDVFAAVEAAAS----EKLNAALTIAGKQERDDKTDEVKVEV 320

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +   +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R 
Sbjct: 321 LEQVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGVTDIRSLSAEVAIIPRA 379

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P 
Sbjct: 380 HGSALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPK 439

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+
Sbjct: 440 RREIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPL 499

Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 500 RAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 559

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  R  IL  M++ + ++  ++  F PRV  + +P D+I  VIG  G
Sbjct: 560 IPSQVLAGALSQAKDARTTILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGPKG 618

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K+I  I EQTGA ++I+DDGTV + ++     +AA +MI +I +  +P+V + + G VVK
Sbjct: 619 KMINSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVK 678

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D RGKI L
Sbjct: 679 TTAFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGSKIRVEIADIDARGKISL 735


>gi|226306131|ref|YP_002766091.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus erythropolis PR4]
 gi|257096704|sp|C0ZYB7|PNP_RHOE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226185248|dbj|BAH33352.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus erythropolis PR4]
          Length = 756

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 296/717 (41%), Positives = 423/717 (58%), Gaps = 48/717 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    ET++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFV---- 178
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +D+ +    D+ V    
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIVSEDNKAGQWVAFPTVDQLENAVFDMVVAGRV 204

Query: 179 -SGTQD----AVLMVELEA--NQLSE-----DVVLDAIIF-GHNECKPVIEAI------- 218
            SG+ D    A++MVE EA  N +++         +AI+  G    KP I  +       
Sbjct: 205 VSGSGDNADVAIMMVEAEATDNVIAKIADGAQAPTEAIVAEGLEAAKPFIARLCAAQAAL 264

Query: 219 -SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
            SK AK     P+    +D  F+ +E   S    E L  +  I  K  R  + D++K ++
Sbjct: 265 ASKAAKPTGDYPVFPAYQDDVFAAVEAAAS----EKLNAALTIAGKQERDDKTDEVKVEV 320

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +   +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R 
Sbjct: 321 LEQVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGVTDIRSLSAEVAIIPRA 379

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P 
Sbjct: 380 HGSALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPK 439

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+
Sbjct: 440 RREIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPL 499

Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 500 RAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 559

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  R  IL  M++ + ++  ++  F PRV  + +P D+I  VIG  G
Sbjct: 560 IPSQVLAGALSQAKDARTTILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGPKG 618

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K+I  I EQTGA ++I+DDGTV + ++     +AA +MI +I +  +P+V + + G VVK
Sbjct: 619 KMINSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVK 678

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D RGKI L
Sbjct: 679 TTAFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGSKIRVEIADIDARGKISL 735


>gi|296127904|ref|YP_003635154.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
 gi|296019719|gb|ADG72955.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
          Length = 791

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 284/724 (39%), Positives = 428/724 (59%), Gaps = 44/724 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T++L+     +  ++  DFFPLTV+ +ER YA
Sbjct: 56  FGTRTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREAFDFFPLTVDVEERQYA 115

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+ + IL  R+IDR +RPLF K  +NE QV++ V+  + + +  V+
Sbjct: 116 AGKIPGAFFRREGRPSTDAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAYDVL 175

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AAS +  LSGLPF GPV   ++  ++GQ+V  PR  E ++ + D+ V+G       A
Sbjct: 176 AINAASISTQLSGLPFSGPVAATRLALVDGQWVAFPRYSERERSTFDIVVAGRVVGDDVA 235

Query: 185 VLMVELEANQ-------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           + M+E +A +              +E+VV   +       K ++EA  +LA   AKE   
Sbjct: 236 IAMIEADAPENAWNLIHGGGGTAPTEEVVAQGLEASKPFIKVLVEAQQQLAAQAAKETQT 295

Query: 229 -PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            P   D +   F+ +E+  S+ +   L+++     K  R  ++D++K ++    +++   
Sbjct: 296 FPTFPDYQPDAFAAVEQAASERLSAALQIAG----KQERENRLDEIKGEVAGELAAQFEG 351

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E EI + +  +Q +++R  +L    R+DGR    +R +SA+V +L RTHGS+LF RG+
Sbjct: 352 -REKEISAAYRSLQKQLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGE 410

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +DSLS   R  +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 411 TQILGVTTLNMLRMEQQIDSLSPETRKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 470

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RAI PVLP   +FPY +R VSE   S+GS+SM +VC ++L+L++AGVP+  PVAGIAMG
Sbjct: 471 ERAIVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAMG 530

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 531 LVSDTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGAL 590

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QAK  RL IL+ +++ +     ++  F PRV  + +P D+I  VIG  GK+I  I E+T
Sbjct: 591 TQAKEARLAILDVIAEAIDVPD-EMSPFAPRVISVKVPVDKIGEVIGPKGKMINQIQEET 649

Query: 582 GAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGTV I ++    AE   A     +   +PE+ + + G VVK   FGAF+  
Sbjct: 650 GADISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEIGERFVGTVVKTTTFGAFISL 709

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD--QN 693
              +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L   V+D  Q 
Sbjct: 710 SPGKDGLLHISQIRKLVGGKRVENVEDVLAVGQKVQVEIGEIDPRGKLSLH-AVLDEAQT 768

Query: 694 TGKP 697
            G P
Sbjct: 769 EGDP 772


>gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
 gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
          Length = 731

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 284/729 (38%), Positives = 424/729 (58%), Gaps = 80/729 (10%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL     TVVLATV  + + +  +DF PLTV Y E+TYA G+IPGGY++RE
Sbjct: 18  KVAKQASGAVLLRVKNTVVLATVAREDT-QVSEDFLPLTVQYIEKTYAAGRIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E    VV++ AAS AL LS
Sbjct: 77  TKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P   PV G +V YI+ ++V+NP   E + S LDL+V+G +D +LM+E+ +        
Sbjct: 137 DIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDELLMIEMRSIPTEKDEI 196

Query: 193 ----------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
                                 N+ SED++++AI            A  +      KE  
Sbjct: 197 VPIALDPMMDPNLSGVIAMQDMNEFSEDLIVEAIAEAGKAILRASNAYEEAFSKHKKEDA 256

Query: 231 VIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            ++ K   ++E E     +++  K D++ +     K  R  ++  + K++++   ++   
Sbjct: 257 QLELK--PEIENESVAVYLNEFYKNDVKAAINQMAKSERASELTKIAKQILTDEVAQKEG 314

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
           W E  + +V    + K+VR  ++++ VR DGR+ + VR IS +  +L   HGS LF RG 
Sbjct: 315 WEEEVVSNVLAKFKKKIVREQIINEGVRADGRELKEVRPISIETNILPNAHGSCLFTRGQ 374

Query: 346 TQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           TQA+VV TLGT  D Q  D L+  G   + FM +YNF   + GE S + AP RRE+GHG 
Sbjct: 375 TQALVVATLGTDGDAQMYDMLTEKGAVTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGN 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG SLAL  AGV   K VAG+A
Sbjct: 435 LAKRALAPSIDVNS--PYTIRLVSEILESNGSSSMASVCGGSLALRAAGVDTPKLVAGVA 492

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           MGL+ +GD   +L+DI G EDH G MDFKVAG+  GITA+QMD+K+GGIS +++  AL Q
Sbjct: 493 MGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGISLDVLKEALLQ 552

Query: 524 AKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           A+ GRLHILN M K  +   + + E   P++E+ ++ P +I ++IG  GK I+ I+E+  
Sbjct: 553 AREGRLHILNLMEK--ANENISVNEDILPKLELFSVDPGKIVDIIGQAGKTIKEIIEKFD 610

Query: 583 AKVNID-DDGTVKIASSSLAEIEAAREMIRSITD--------------------VPEVN- 620
             +++D + G VKIA +  + ++AA++ I  I                       PE N 
Sbjct: 611 VAIDLDREKGEVKIAGAQKSSVDAAKDYIIQIVSKDNGKGFGGKRGGKDGKPHKTPEFNI 670

Query: 621 -KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
              ++G+V  V++FGAF+   G  DGL+HIS++ T         +K GD V VK+   + 
Sbjct: 671 GDEFEGEVKSVVEFGAFIGLPGGVDGLLHISKIKTP--------LKAGDKVKVKI--SEQ 720

Query: 680 RG-KIKLSM 687
           +G KI LS+
Sbjct: 721 KGHKISLSL 729


>gi|11514054|pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
           Gpsi Enzyme
          Length = 757

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 280/708 (39%), Positives = 415/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 34  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 93

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 94  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 153

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 154 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 213

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKM--------CAK 227
           A++MVE EA + +  +V D         +  G +  KP I+ + K              +
Sbjct: 214 AIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 273

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E +S  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 274 FPVFLDYQD--DVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-R 330

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 331 EKEISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 390

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 391 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 450

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 451 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 510

Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 511 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 570

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG   ++I  I E TGA
Sbjct: 571 ARDARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGA 629

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +   PEV +   G VVK   FGAFV    
Sbjct: 630 EITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLP 689

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 690 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737


>gi|325962822|ref|YP_004240728.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468909|gb|ADX72594.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 767

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 278/715 (38%), Positives = 422/715 (59%), Gaps = 45/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    + T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 32  FGKRVIRFETGRLAKQAAGAAMVYIDDDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 91

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 92  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELYDVV 151

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NG-QYVLNPRLDEDQGSLDLFV-----SG 180
           ++ A+S +  LSGLPF GP+ G +V  +   NG Q+V  P+  + + S+   V     +G
Sbjct: 152 AINASSMSTQLSGLPFSGPIGGVRVALVADENGSQWVAFPKHSQLENSVFNMVVAGRIAG 211

Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   S +++ +          +  G    KP I+A+ +          K
Sbjct: 212 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCEAQADLAARAAK 271

Query: 224 MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
              + P+ +D +D  ++ +E   +  +    +++    +K  R    D LK ++ +  + 
Sbjct: 272 PTVEFPVFLDYEDDVYAAVESAAADKLAAVFQIA----DKQERDNASDALKDEVTASLAG 327

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           +     E E+ + F  +   VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F
Sbjct: 328 QFEG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIF 386

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL   + EQ +DSLS  +   +M +YNF P +TGE  R+G+P RREIGH
Sbjct: 387 ERGETQIMGVTTLNMLKMEQQIDSLSPVKTKRYMHNYNFPPYSTGETGRVGSPKRREIGH 446

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAG
Sbjct: 447 GALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAG 506

Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++
Sbjct: 507 IAMGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVL 566

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL+QA+  RLHIL  ++  + ++  +L EF PRV  + IP D+I  VIG  GK+I  I
Sbjct: 567 AAALKQAREARLHILEVINSAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQI 625

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            E TGA ++I+DDGTV I +++    EAAR  I +I +  VPE+ + Y G VVK   FGA
Sbjct: 626 QEDTGADISIEDDGTVYIGATNGPSAEAARSAINAIANPQVPEIGERYLGTVVKTTTFGA 685

Query: 636 FVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           FV     +DGL+HIS+L    + +RV    DVV  G  V V++   DDRGK+ L+
Sbjct: 686 FVSLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLA 740


>gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 719

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 274/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  LL   HGS 
Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNLLPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSIDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ +   F +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDSKFAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIVVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+ G  +++D + G VKIA +   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGNQNEQIKAAKDYIINITSSQKGTKKGSKDKDISDFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 719

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 274/692 (39%), Positives = 410/692 (59%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+ + AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMGLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 305 ITK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDSQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 ILKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            IVE+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGPKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|149371588|ref|ZP_01891004.1| polynucleotide phosphorylase/polyadenylase [unidentified
           eubacterium SCB49]
 gi|149355215|gb|EDM43775.1| polynucleotide phosphorylase/polyadenylase [unidentified
           eubacterium SCB49]
          Length = 739

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 270/696 (38%), Positives = 429/696 (61%), Gaps = 25/696 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD   F PLTV+Y+E+  A G+
Sbjct: 15  GREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-LPFLPLTVDYREKFAAAGR 73

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD +  P  ++ +
Sbjct: 74  YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKNYSAETQVMIQLMSHDDDVMPDAMAGL 133

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELE 191
           AASAA+ LS  PFE  +  A+V  ++G++++NP R   ++  +D+ +  + D+V+MVE E
Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVDGKFIINPTRAQLEESDIDMMIGASADSVMMVEGE 193

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL--EEEMSQMIK 249
            +++SE+ +++AI F H   K  I+A  +LA    K+ +    +++ +   +EE+ + + 
Sbjct: 194 MDEISEEEMIEAIKFAHEAIKVQIDAQLRLADAVGKKEV----REYEEAGDDEELVKRVH 249

Query: 250 EDLRVSCFIPEKYVRCKQ-----IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +      +   K    KQ        +K+++   F+ E      G +   +   +   VR
Sbjct: 250 DLAYDKVYAVAKAGSTKQERTAAFAAIKEEVKETFTEEELEEYGGLVSEYYRKAEKAAVR 309

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + +++ +R+DGR ++ VRDI  ++  L   HGS++F RG+TQA+  VTLGT  D   +D
Sbjct: 310 DLTVNEGLRLDGRKTDEVRDIWCEIDYLPSVHGSAVFTRGETQALATVTLGTSRDANKID 369

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S     +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P+    PYT+R
Sbjct: 370 MPSYEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIPEDC--PYTVR 427

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482
           +VSE+ ES+GSSSMATVC  ++A+MDAG+ ++KPV+GIAMGL+ D +   + +L+DI GD
Sbjct: 428 VVSEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETGKYAVLTDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED+LG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL ++   ++  
Sbjct: 488 EDYLGDMDFKVTGTADGITACQMDIKVKGLSYEILVSALKQARDGRLHILEKIVATIATP 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIAS 597
           R  + ++ P++  + I  + I  +IG GGKVI+ + ++TG  + I++D     G V+I  
Sbjct: 548 REDVKDYAPKMVGVRIANEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIVEILG 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTE 655
           +    I+A    I SIT  P V   Y+ +V+K++DFGA V +  A   + L+H+S+L+ E
Sbjct: 608 TGQEGIDAVLAKIDSITFKPVVGSAYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWE 667

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           R    SDVV  GD   VK    D R  K K+S K +
Sbjct: 668 RTENVSDVVNMGDVFDVKYFGIDKRTRKEKVSRKAL 703


>gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
 gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
          Length = 727

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/722 (39%), Positives = 420/722 (58%), Gaps = 56/722 (7%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           + V IE   R      G +ARQ++G+     G++V+LATVV D +     DF PLTV Y 
Sbjct: 3   YDVNIELENRVEDYSFGDVARQANGSAWLKSGDSVILATVVIDETEIVKDDFLPLTVQYI 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+TYA GKIPGG+ +RE++P++ E L SR++DRS+RPLF K + + TQ+ I V     ++
Sbjct: 63  EKTYAAGKIPGGFFKRETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSAGSDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++ AASAAL  S +     V   +   ++G+ VLNP L +  + +LDL++SGT+D
Sbjct: 123 DLQVLALNAASAALYTSDIDINTSVSAVRAAKVDGELVLNPTLSQLKEATLDLYLSGTKD 182

Query: 184 AVLMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--- 235
            +LM+E+ +      Q+ E+ ++D +I        ++  + K   +   E I I  K   
Sbjct: 183 DLLMIEMRSFGSNETQIEENYIIDPMIDPALSMPSIL--VHKSNAIAEDELIKIFEKTQN 240

Query: 236 ----DFSKLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSS 285
                 +K EE      KE + + C         + Y+R   + D+   M     SE S+
Sbjct: 241 ALFASNTKYEEAFGDYKKETVAIECKAHVINTEMQTYIRDNHMSDIAAAMNQMAKSERST 300

Query: 286 ---------------WNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
                          W++ E    +    E ++ + VR+ +L+++VR DGR    VR IS
Sbjct: 301 ALRQLRKNIIKTKTEWSDVEQEVSLKDAIESVKKEQVRSQILNERVRADGRALTEVRPIS 360

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCA 384
               +L + H S LF RG+TQA+VV+T+G  +D Q  +SL+  GTQ  +FM+HYNF   +
Sbjct: 361 ISTNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGTQNENFMVHYNFPGFS 420

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
            GE S +    RRE+GHG LA+RA+ P++    Q   T+R+VSEI ES+GSSSMATVCG 
Sbjct: 421 VGEASPIMGTKRRELGHGNLAKRALEPIVDLDGQ---TVRLVSEILESNGSSSMATVCGG 477

Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            +AL  A +  S  VAGIAMG+V DGD + ILSDI G EDH G MDFKV G+  GITAMQ
Sbjct: 478 YMALRAADIDTSDTVAGIAMGMVSDGDKYAILSDIMGLEDHDGDMDFKVTGSKDGITAMQ 537

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQI 563
           MD+K+GGIS +I+  AL QAK GR HI++ M  + +E +++  +   P  +   I P  I
Sbjct: 538 MDIKLGGISLDILKEALYQAKDGRSHIIDIM--IDAEQKIEFNDGVLPSTDFFHIDPSVI 595

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
             VIG  GKVIR I+E+    ++ID  DG VK+   + + +  ARE I  I + P++ KI
Sbjct: 596 GEVIGQAGKVIREIIEKFEVAIDIDKKDGKVKVTGKNKSAVLGAREHIEGIANSPKIEKI 655

Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                  Y+G V K++DFGAF+      DGL+HIS++S +RV K SDVV EGD + V++L
Sbjct: 656 KYQVGDKYEGVVKKIVDFGAFIGLPDGTDGLIHISKISDQRVEKVSDVVSEGDKIMVEIL 715

Query: 676 DF 677
           +F
Sbjct: 716 EF 717


>gi|256832257|ref|YP_003160984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Jonesia denitrificans DSM 20603]
 gi|256685788|gb|ACV08681.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Jonesia denitrificans DSM 20603]
          Length = 735

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 285/715 (39%), Positives = 413/715 (57%), Gaps = 37/715 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+  A   G+T++L+T    +  KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLARQAAGSACAYLDGDTMLLSTTAVGKHPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+    + +  V+
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLIDRPLRPSFVKGLRNEVQVVITVLSIHPDEAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGT----QDA 184
           ++ AAS +  LSGLP+ GPV G +V  I+ Q+V  P+  D+++   D+ VSG       A
Sbjct: 138 AINAASMSTQLSGLPYSGPVGGVRVALIDDQWVAFPKHSDKERAVFDMVVSGRIVGDDVA 197

Query: 185 VLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI--------SKLAKMCAK 227
           ++MVE EA + S ++V +          +  G    KP I A+        +K AK   +
Sbjct: 198 IMMVEAEATENSWNLVKNQGATAPTEGVVAEGLEAAKPFIRALCEAQIELAAKSAKPQME 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E +     +DLR +  I +K  R  + D++K   ++  + E     
Sbjct: 258 FPLFLDYQD--DVYEAVKNAATDDLRTALTIADKQERENRQDEIKDATLASLA-EQFEGR 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           + EI +    +   +VR  +L   VR+DGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 315 DKEISAAIRSLTKSLVRQRVLTDGVRIDGRGLADIRTLSAEVEVVPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + + TL   + EQ +DSL    R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 IMGITTLNMLKMEQQIDSLGPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+
Sbjct: 435 ALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLI 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 495 SDTVDGETRYAALTDILGAEDAYGDMDFKVAGTRDFVTAIQLDTKLDGIPASVLAGALTQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  R  IL+ + + + +    +    PRV  + +P D+I  VIG  GK+I  I E TGA
Sbjct: 555 ARDARYTILDVIEEAIDQPD-DMSPHAPRVIAVQVPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKI--ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGTV I  A  + AE   A     +   VPEV + + G VVK   FGAFV    
Sbjct: 614 DITIEDDGTVYIGAADGTSAEAARAAINAIANPHVPEVGERFVGTVVKTTTFGAFVSLTP 673

Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +DGL+HISQ+       RV    DVV  G  + V++ + D RGK+ L   V D+
Sbjct: 674 GKDGLLHISQIRRLVGGRRVENVDDVVSVGQKLQVEIAEIDPRGKLSLHAVVDDE 728


>gi|227495155|ref|ZP_03925471.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
           DSM 15436]
 gi|226831607|gb|EEH63990.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
           DSM 15436]
          Length = 782

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 282/714 (39%), Positives = 421/714 (58%), Gaps = 48/714 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETGR+ARQ+ G+ +A    ET +L+     +  KD  DFFPLTV+ +ER Y
Sbjct: 18  KFGKRVIRFETGRLARQAAGSAMAYLDDETAILSATTVGKHPKDQFDFFPLTVDVEERQY 77

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP    IL  R++DR +RP F K  +NE QV+  V+    + +  V
Sbjct: 78  AAGKIPGSFFRREGRPGTEAILACRLMDRPLRPAFVKGLRNEVQVVGTVLAIHPDDAYDV 137

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QD 183
           +++ AAS +  ++GLPF GP+ G ++  I+GQ+V  PR  E ++ + ++ V+G       
Sbjct: 138 LAINAASMSTQIAGLPFSGPIGGTRLALIDGQWVAFPRYSEMERSTFNIVVAGRVVGDDV 197

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVI----EAISKLAKMCAK 227
           A++MVE                  +E+VV D    G    KP+I    EA  ++AK  +K
Sbjct: 198 AIMMVEAGGGDDMVDLMAAGGTVPTEEVVAD----GLEAAKPIIRQLCEAQLEVAKHASK 253

Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
           E    P+  D  D  ++ +E+ ++  + E + ++  +P    R  +ID++++ M++    
Sbjct: 254 ETVEFPLYFDYTDEQYAAVEKAVTADLSEAITIAAKLP----REARIDEIQEAMLASLEE 309

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           E     E ++ + F  I+  ++R  +L   VR+DGR    +R +SA+V +L R HGS+LF
Sbjct: 310 EFPE-QEKDLKAAFRSIEKSLIRNRVLRDGVRIDGRKPTDIRSLSAEVEVLPRVHGSALF 368

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL     EQ +D+LS      +M  YNF P +TGE  R+G+P RREIGH
Sbjct: 369 QRGETQILGVTTLNMLRMEQQLDNLSPVTAKRYMHQYNFPPFSTGETGRVGSPKRREIGH 428

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAG
Sbjct: 429 GALAERALVPVIPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLQAGVPLRAPVAG 488

Query: 462 IAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGL+    DG    + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++
Sbjct: 489 IAMGLMTGEVDGVQKAVTLTDILGIEDGFGDMDFKVAGTREYITALQLDTKLDGIDSEVL 548

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA+  R  IL+ +++ +SE   ++ ++ PR+  + IP D+I  VIG  GK+I  I
Sbjct: 549 AGALAQARDARFAILDLINQAISEPD-EMSKYAPRIISVQIPVDKIGEVIGPKGKMINQI 607

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            E TGA++ I+DDGTV I + +    EAAR M+ +I +  +PEV + Y G VVK   FGA
Sbjct: 608 QEDTGAELTIEDDGTVYIGAETGEAAEAARAMVNAIANPQLPEVGERYVGTVVKTTSFGA 667

Query: 636 FVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FV     +DGL+HISQ    +  +R+    DV+  G  V V++ + D RGK+ L
Sbjct: 668 FVSLTPGKDGLLHISQVRRLVGGKRIESVEDVLGVGQQVEVEIAEIDARGKLSL 721


>gi|320094033|ref|ZP_08025857.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979038|gb|EFW10557.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 785

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 291/726 (40%), Positives = 425/726 (58%), Gaps = 50/726 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGKRTIRFETGRLARQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERAYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+
Sbjct: 79  AGRIPGSFFRREGRPGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG---TQD-- 183
           ++ AAS +  ++GLPF GP+ G ++  ++GQ+V  PR  E ++   ++ V+G   T+D  
Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALVDGQWVAFPRWSELERSVFNIVVAGRIVTKDDG 198

Query: 184 ----AVLMVELE------------ANQLSEDVVLDAI----IFGHNECKPVIEAISKLAK 223
               A++MVE              A   +E+VV D +     F    C+  +E  +K +K
Sbjct: 199 SEDVAIMMVEAGGGKNEWELIQAGATAPTEEVVADGLEAAKPFIKALCRAQLEVAAKASK 258

Query: 224 MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
             A+ P+ +D  D  +S +EE +   + E L        K  R   +D +K++M++  + 
Sbjct: 259 ETAEFPLFLDYTDEEYSAVEECVGGKLAEAL----LTEGKLARDGAVDAVKEEMLAALAD 314

Query: 282 EHSSWNEGE--IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
               + EGE  + + F  ++   +R   L  ++RMDGR    +R +SA+V +L R HGS+
Sbjct: 315 R---FPEGEKNLKAAFRSLEKATIRARTLRDEIRMDGRTPRQIRSLSAEVEVLPRVHGSA 371

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREI
Sbjct: 372 LFQRGETQILGVTTLAMLRMEQQIDNLSPVNSKRYMHQYNFAPFSTGEVGRVGSPKRREI 431

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PV
Sbjct: 432 GHGDLAERALVPVLPTREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPV 491

Query: 460 AGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGL+    DG    + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   
Sbjct: 492 AGIAMGLMTGEVDGQPKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQ 551

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QA+  RL IL+ +++ + +   ++    PR+  + +P D+I  VIG  GK+I 
Sbjct: 552 LLRAALGQARDARLAILDLINQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMIN 610

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I + TGA + I+DDGTV IASS  A  EAAR  I  I +  +PEV + + G VVK   F
Sbjct: 611 QIQDDTGADITIEDDGTVYIASSDGASAEAARTTINQIANPQMPEVGERFVGTVVKTTSF 670

Query: 634 GAFVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           GAFV     +DGL+HISQ    +  +R+    DV++ G  V V++ +  DRGK+ L   V
Sbjct: 671 GAFVSLTPGKDGLLHISQVRRLVGGKRIESVDDVLQVGQQVEVEINEIGDRGKLSLH-AV 729

Query: 690 VDQNTG 695
           +D   G
Sbjct: 730 IDGEAG 735


>gi|255326374|ref|ZP_05367458.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
           25296]
 gi|255296591|gb|EET75924.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
           25296]
          Length = 739

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/718 (40%), Positives = 424/718 (59%), Gaps = 53/718 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           R ++ ETGR+A+Q+ G+VL T   ET +L+     +S ++G DFFPLTV+ +ER YA GK
Sbjct: 21  RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAGGK 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  Y RRE RP+   IL +R+IDR +RP F+K  +NE QV++ V+ ++ +   +  ++ 
Sbjct: 81  IPASYFRREGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYEPDEIYNTFAIN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183
           AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G        T+D
Sbjct: 141 AASASTSLSGAPFNGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGTED 200

Query: 184 -AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKL-AKMCAK--EPI 230
            A++MVE EA   S  ++ +          +  G    KP I A+ K  A + A+  +P 
Sbjct: 201 VAIMMVEAEATDNSWKLIKEDGQTAPTEEIVAEGLEAAKPFIAALCKAQADLVARAGKP- 259

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI----------DDLKKKMVSYFS 280
            ++   F    E++      D  V  F  ++      I           +L+++++   +
Sbjct: 260 ALELPFFGGHGEDV------DAAVEAFAADRLAEVYSIAGKQEREAAAAELQEELMEALT 313

Query: 281 SEHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
            E   + E   E+   F  +   VVR  +L ++VR+DGR    +R ++A+V +L R HGS
Sbjct: 314 GEGKEFEERSNEVSVAFAALTKHVVRQRILTEQVRIDGRGLTDIRQLTAEVEILPRVHGS 373

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           +LF RG+TQ + + TL   + EQ +DSL   +   ++ HYNF P +TGE  R+G+P RRE
Sbjct: 374 ALFERGETQIMGITTLNMLKMEQQLDSLHPVKSKRYIHHYNFPPYSTGETGRVGSPKRRE 433

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           IGHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  P
Sbjct: 434 IGHGALAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAP 493

Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           VAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 494 VAGIAMGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPA 553

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           +++  AL QA+  RLHIL  +   + ++  ++ EF PR+  + IP  +I  VIG  GK+I
Sbjct: 554 SVLAGALTQAREARLHILEVLVSAI-DAPDEMSEFAPRIISVKIPVAKIGEVIGPKGKMI 612

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I E TGA ++I+DDGTV I ++     EAAR  + +I +  VPEV + Y G VVKV D
Sbjct: 613 NQIQEDTGADISIEDDGTVYIGAADGPSAEAARAAVNAIANPQVPEVGERYLGTVVKVTD 672

Query: 633 FGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           FGAF+     +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ L+
Sbjct: 673 FGAFISLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLA 730


>gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           RM1221]
 gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           RM1221]
 gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 719

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 274/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++ +  
Sbjct: 257 KNEIEYPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEISNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 305 IAKE--WSEESVLNTLAKVKRKLIRGQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            IVE+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|118474584|ref|YP_892413.1| polynucleotide phosphorylase/polyadenylase [Campylobacter fetus
           subsp. fetus 82-40]
 gi|187610245|sp|A0RQD0|PNP_CAMFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118413810|gb|ABK82230.1| polyribonucleotide nucleotidyltransferase [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 728

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 284/731 (38%), Positives = 420/731 (57%), Gaps = 78/731 (10%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            +  ++A+Q+ GAVL     TVVLA V  + +  + +DF PLTV Y E+ YA G+IPGGY
Sbjct: 14  FDLNKVAKQAAGAVLMRVKNTVVLAAVAREDAQVE-EDFLPLTVQYIEKQYAAGRIPGGY 72

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           ++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E    VVS+ AAS A
Sbjct: 73  VKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSSDPEVDLQVVSLNAASVA 132

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192
           L LS +P   PV G +V +ING++V+NP   E + S LDL+V+G +D +LM+E+ +    
Sbjct: 133 LYLSDIPVNSPVCGVRVGHINGKFVINPSNSELKNSALDLYVAGVKDELLMIEMRSLPNE 192

Query: 193 ----------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
                                       N+ SED+++DAI            A  +  + 
Sbjct: 193 QNEIVPVIAIDPMMDPSLNEGFVSRQKMNEFSEDLMIDAIKLATEAILKGSNAYEEAFRN 252

Query: 225 CAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
             KE   ++ K   ++E E     +++  KED++ +     K  R  ++  + K++    
Sbjct: 253 YKKETANLEYK--PEIENENVAIYINEFYKEDVKAAINQMAKSERASELSKIAKQIALSE 310

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  I ++    + K+VRT ++  K R DGR  + VR IS +  +L   HGS 
Sbjct: 311 VAQKEGWDEALISNILGKYKKKLVRTGIIKDKKRADGRGLKDVRPISIETNILPNAHGSC 370

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN----DFMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLGT  D Q  + L  T++N     FM +YNF   + GE S + AP 
Sbjct: 371 LFTRGQTQALVVTTLGTDNDAQMSEYL--TEKNAVADKFMFNYNFPGFSVGEASPLKAPG 428

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P +   +  PY+LR+VSEI ES+GSSSMA+VCG SL+L  AGV  
Sbjct: 429 RRELGHGNLAKRALYPSIDLNS--PYSLRVVSEILESNGSSSMASVCGGSLSLRAAGVET 486

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGLV +GD+  +L+DI G EDH G MDFKVAG+  GITA+QMD+K+GGIS +
Sbjct: 487 IKLVAGVAMGLVFEGDEHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGISLD 546

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QAK  R HILN M K   E  +   +  P++E+ ++ P +I ++IG  GK I+
Sbjct: 547 VLKEALYQAKEARDHILNLMVKADEEIVVN-EDVLPKLELFSVDPSKIVDIIGQAGKTIK 605

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE---------------- 618
            I+E+    +++D D G VKIA     ++EAA++ I  IT   +                
Sbjct: 606 EIIEKFEVSIDLDRDKGEVKIAGGERQKVEAAKDYIIQITQKEQRSGGFRNKREYKNVTP 665

Query: 619 --VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             +   ++G++ K+  FGAF+      DGL+HIS++ +         +KEGDT+ VK+ D
Sbjct: 666 FNIGDEFEGEIKKMAAFGAFISLRDGVDGLLHISKIVSP--------LKEGDTIKVKVSD 717

Query: 677 FDDRGKIKLSM 687
               GKI L +
Sbjct: 718 IKG-GKISLDL 727


>gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
 gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
          Length = 983

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/697 (38%), Positives = 421/697 (60%), Gaps = 21/697 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  GR +  ETG++AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+YQE+ 
Sbjct: 71  EFEIGGRSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQ 130

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q+++NV+  D +  P 
Sbjct: 131 YAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVLSSDGKQDPD 190

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V++  A+SAALMLS +P+ GP+   +V  I+G ++LNP +DE   S L+L  + ++D  L
Sbjct: 191 VMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFILNPTVDELGSSDLNLIYACSRDKTL 250

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241
           M++++A +++E  +   +   H+E    I+   +LAK   KE       +I    + K+ 
Sbjct: 251 MIDVQAREITERDLQAGMKLAHSEAIKCIDPQIRLAKRAGKEKKEYKISLISDTSYEKIR 310

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I+E    S +   K+ R + ++ + + + +    E+   +   +    + ++ +
Sbjct: 311 TFSEAPIEEVFTDSSY--GKFERGEALEKITQTVKAKLEEENDEDSLKFLHKAVDTVRKQ 368

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V+R  ++++ +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG   D Q
Sbjct: 369 VIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGAPGDAQ 428

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G     FM+HY+F P +  EV++ G  +RRE+GHG LA +A+  VLP  + FPY
Sbjct: 429 RLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPESDFPY 488

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474
            +R+ SE+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV   D       ++ 
Sbjct: 489 AVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPATGDISNYR 548

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R  IL+ 
Sbjct: 549 ILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARNQILDR 608

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +S +R      +PR+  ++   D +R ++    K    I ++TGA+V++  DGTV 
Sbjct: 609 MDQEISTARAINDGSSPRLATLSFSSDSLRKLLFHRKK----IEQETGARVSV-SDGTVT 663

Query: 595 IASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I + +   ++ A E +  +     EV + YKG V  + ++GAFV F G + GL+HIS+LS
Sbjct: 664 IVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHISELS 723

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            E VAK SDVV  G ++ ++ +  D RG IKLS+K  
Sbjct: 724 HEPVAKVSDVVTVGQSLSLRCIGQDVRGNIKLSLKAT 760


>gi|326333597|ref|ZP_08199836.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948613|gb|EGD40714.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
           bacterium Broad-1]
          Length = 753

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 290/715 (40%), Positives = 427/715 (59%), Gaps = 40/715 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R +K ETG +ARQ+ G+V A    ET++L+     +  KD  DFFPLT++ +ER Y
Sbjct: 17  KFGTRTVKFETGLLARQAAGSVTAYLDDETMLLSATTVSKQPKDHFDFFPLTIDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + R E RP E+ IL  R+IDR +RP F K  +NE QV+I VM  D +    V
Sbjct: 77  AAGKIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALDPDQPYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD 183
           +++ AAS +  LSGLPF GPV G +V  I GQ+V  P   + +    D+ V+G    T D
Sbjct: 137 LAINAASMSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDMVVAGRVTETGD 196

Query: 184 -AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE-- 228
            A++MVE E+ + + D+V           +  G +  KP I    EA ++LAK  AK   
Sbjct: 197 VAIMMVEAESTEQTWDLVQSGAQAPTEPIVAGGLDAAKPFIKQLVEAQAELAKQSAKPVQ 256

Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCF---IPEKYVRCKQIDDLKKKMVSYFSS 281
             PI +D +D  +  +E  +   + +   V      +  K  R ++ D +K  ++    +
Sbjct: 257 EYPIFLDYQDDVYEAVEATVGADVTDLYSVKGSRERVLTKLEREEEGDRIKLALLEKIGA 316

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           +     EGEI + ++ +  K +RT +L  KVR+DGR    +R + ++VG++ R HGS+LF
Sbjct: 317 QFEG-REGEIGAAYKALTKKAIRTQVLRDKVRIDGRGLADIRPLHSEVGVIPRVHGSALF 375

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL   + EQ +D+LS  +   +M  Y F P +TGE  R+G+P RRE+GH
Sbjct: 376 ERGETQILGVTTLDMLKMEQQLDTLSPEKHRRYMHKYIFPPFSTGETGRVGSPKRREVGH 435

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LARRA+ PVLP   +FPY +R +SE   S+GS+SM +VC S+++L++AGVP+  PVAG
Sbjct: 436 GALARRALLPVLPSREEFPYAIRQLSEAMGSNGSTSMGSVCASTMSLLNAGVPLKAPVAG 495

Query: 462 IAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGL+    DG+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++
Sbjct: 496 IAMGLISGEIDGETKYVALTDILGAEDAFGDMDFKVAGTSEFVTALQLDTKLDGIPAEVL 555

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK  R  IL+ M + +     ++    PR+  + +P D+I  VIG  GKVI  I
Sbjct: 556 AQALNQAKDARTTILDVMHEAIGGVE-EMAPTAPRIITVKVPVDKIGEVIGPKGKVINQI 614

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            E TGA+++I+DDGTV I ++  A  EAAR  + +I +  +PEV + Y G VVK  +FGA
Sbjct: 615 QEDTGAQISIEDDGTVLIGATDGAAAEAARAAVNAIANPTMPEVGERYLGTVVKTTNFGA 674

Query: 636 FVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           FV     +DGL+HI++L      +RV    DVV+ G  + V++ + DDRGK+ L+
Sbjct: 675 FVALLPGKDGLLHITKLRALNGGKRVESVEDVVEVGQKIQVEIAEIDDRGKLSLA 729


>gi|308176844|ref|YP_003916250.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
           arilaitensis Re117]
 gi|307744307|emb|CBT75279.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
           arilaitensis Re117]
          Length = 745

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 284/717 (39%), Positives = 425/717 (59%), Gaps = 46/717 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGRIA+Q+ G+ +     ET +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  YGTRTIRFETGRIAKQAAGSAMVYIDDETALLSATTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE QV++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQVVVTVLSIEPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVG---AQVDYING-QYVLNPRLDEDQGSLDLFV-----SG 180
           ++ A+S +  LSGLPF GP+ G   A VD  NG Q+V  P+  E + ++   V     +G
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVDDGNGAQWVAFPKHSELKNAVFNMVVAGRIAG 197

Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   + +++ +          +  G    KP I+ + +          K
Sbjct: 198 DDVAIMMVEAEATDNAWELIKERGAQAPTEEVVAEGLEAAKPFIKVLCEAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
              + P+  D ++  ++ +E   S  + E   ++    +K  R     + K ++V+  ++
Sbjct: 258 ETVEFPVFRDYEEDAYTAVEAAASTRLAEIYTIA----DKQERDNAAGEFKDEIVAQLTA 313

Query: 282 EHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           E S++ E  GEI   F  +   +VR  +L ++VR+DGR    +R +SA+V +L R HGS+
Sbjct: 314 EGSAFAERAGEISKAFGAVTKHIVRQRILTEQVRIDGRGLADIRQLSAEVEVLPRVHGSA 373

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           +F RG+TQ + V TL   + EQ +DSLS  +   +M +YNF P +TGE  R+G+P RREI
Sbjct: 374 IFERGETQIMGVTTLNMLKMEQQIDSLSPVKSKRYMHNYNFPPYSTGETGRVGSPKRREI 433

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   V
Sbjct: 434 GHGALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAV 493

Query: 460 AGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV D  D    +  L+DI G ED +G MDFKVAGT   +TA+Q+D K+ GI  +
Sbjct: 494 AGIAMGLVSDTVDGETRYAALTDILGAEDAMGDMDFKVAGTSEFVTAIQLDTKLDGIPAS 553

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QA+  RLHILN +++ + ++  +L    PR+  + IP D+I  VIG  GK+I 
Sbjct: 554 VLAAALTQAREARLHILNVLNQAI-DAPDELNVNAPRIISVKIPVDKIGEVIGPKGKMIN 612

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA ++I+DDGTV I +++    EAAR  I +I +  VPEV + Y G VVK+  F
Sbjct: 613 QIQEDTGADISIEDDGTVLIGATNGESAEAARSAINAIANPQVPEVGERYLGTVVKLTTF 672

Query: 634 GAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           GAFV     +DGL+HIS+L      +RV    DVV  G  + V++   DDRGK+ L+
Sbjct: 673 GAFVSLTPGKDGLLHISELRKINGGKRVEDVEDVVGVGQKLQVEITKIDDRGKLSLA 729


>gi|28493388|ref|NP_787549.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
           str. Twist]
 gi|81437795|sp|Q83G94|PNP_TROWT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28476429|gb|AAO44518.1| polyribonucleotide nucleotidyltransferase [Tropheryma whipplei str.
           Twist]
          Length = 738

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 289/728 (39%), Positives = 421/728 (57%), Gaps = 62/728 (8%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   GET++L++    +  K+  DFFPLTV+ +ER+YA
Sbjct: 16  FGTRTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYA 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG Y RRE RP+   IL  R+IDR +RP F+   +NE QVI+ V+          +
Sbjct: 76  AGKIPGSYFRREGRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSIAPGEFYEAL 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV--------SG 180
           ++ AASA+ ++SGLPF GP+ G ++  I+GQ+V  PR ++  G+  DL V        SG
Sbjct: 136 AINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRYEDLSGAVFDLTVAGRVFVNESG 195

Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKP---VIEAISKLAKMCAKEPIVIDSKD 236
            +D A++MVE EA + + D     +I  H   KP   VIE   + AK+  +    I    
Sbjct: 196 KEDIAIMMVEAEATESAWD-----LIHSHGAKKPNEEVIEEGIESAKVFIRTLCDIQRDL 250

Query: 237 FSKLEEEMSQ-----------------MIKEDLRV-------SCFIPEKYVRCKQIDDLK 272
            SKL    ++                 ++K DL         S + P         D++K
Sbjct: 251 ASKLSLSHTEPDLYPDYSDSVHSFVEGLVKSDLEKVYRGNHDSGYAPNA---LSASDEIK 307

Query: 273 KKMVSYF-----SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           +K    F     S      +  +    ++ +   VVRT +L+   RMDGR    +R + A
Sbjct: 308 QKAYDAFHDAVLSGRFDQDSLSQFPHAYKAVLKDVVRTCVLEGFARMDGRGLSDIRPLDA 367

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387
           +V ++ R HGS++F RG+TQ + V TL   + EQ +DSL+      ++ HYNF P +TGE
Sbjct: 368 EVQVVPRVHGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSKRYIHHYNFPPYSTGE 427

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
           V R+G+P RREIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+
Sbjct: 428 VGRVGSPKRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLS 487

Query: 448 LMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           L++AGVP+  PVAGIAMGL+    DG+  ++ L+DISG ED LG MDFKVAGT   ITA+
Sbjct: 488 LLNAGVPLRAPVAGIAMGLISGRVDGEMRYVTLTDISGSEDALGDMDFKVAGTSDFITAL 547

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q+D K+ GI  +++  AL  A+  RL IL+ +++V+ +S  Q+ E+ PRV  + IP  +I
Sbjct: 548 QLDTKLDGIPAHVLSEALAHARSARLAILDVLTRVI-DSPDQMSEYAPRVVRVKIPVQKI 606

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNK 621
             +IG  GKVI  I ++TGA+++I+DDGTV I SS     E A  M+ SI +   P V  
Sbjct: 607 GELIGPKGKVINSIQDETGAEISIEDDGTVYIGSSQADSSEKAVAMVNSIVNPVEPCVGS 666

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDF 677
            + G VVK M FG+F+     +DGL+HIS++        +    +V+  G  V V++   
Sbjct: 667 QFLGTVVKNMPFGSFISLVPGKDGLLHISEIRKMVDGRHLESVDEVLSVGQKVLVEVSKI 726

Query: 678 DDRGKIKL 685
           DDRGK+ L
Sbjct: 727 DDRGKLCL 734


>gi|28572501|ref|NP_789281.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
           TW08/27]
 gi|81628250|sp|Q820Y9|PNP_TROW8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28410633|emb|CAD67019.1| mRNA processing exonuclease [Tropheryma whipplei TW08/27]
          Length = 735

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 289/728 (39%), Positives = 421/728 (57%), Gaps = 62/728 (8%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   GET++L++    +  K+  DFFPLTV+ +ER+YA
Sbjct: 13  FGTRTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG Y RRE RP+   IL  R+IDR +RP F+   +NE QVI+ V+          +
Sbjct: 73  AGKIPGSYFRREGRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSIAPGEFYEAL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV--------SG 180
           ++ AASA+ ++SGLPF GP+ G ++  I+GQ+V  PR ++  G+  DL V        SG
Sbjct: 133 AINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRYEDLSGAVFDLTVAGRVFVNESG 192

Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKP---VIEAISKLAKMCAKEPIVIDSKD 236
            +D A++MVE EA + + D     +I  H   KP   VIE   + AK+  +    I    
Sbjct: 193 KEDIAIMMVEAEATEPAWD-----LIHSHGAKKPNEEVIEEGIESAKVFIRTLCDIQRDL 247

Query: 237 FSKLEEEMSQ-----------------MIKEDLRV-------SCFIPEKYVRCKQIDDLK 272
            SKL    ++                 ++K DL         S + P         D++K
Sbjct: 248 ASKLSLSHTEPDLYPDYSDSVHSFVEGLVKSDLEKVYRGNHDSGYAPNA---LSASDEIK 304

Query: 273 KKMVSYF-----SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           +K    F     S      +  +    ++ +   VVRT +L+   RMDGR    +R + A
Sbjct: 305 QKAYDAFHDAVLSGRFDQDSLSQFPHAYKAVLKDVVRTCVLEGFARMDGRGLSDIRPLDA 364

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387
           +V ++ R HGS++F RG+TQ + V TL   + EQ +DSL+      ++ HYNF P +TGE
Sbjct: 365 EVQVVPRVHGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSKRYIHHYNFPPYSTGE 424

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
           V R+G+P RREIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+
Sbjct: 425 VGRVGSPKRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLS 484

Query: 448 LMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           L++AGVP+  PVAGIAMGL+    DG+  ++ L+DISG ED LG MDFKVAGT   ITA+
Sbjct: 485 LLNAGVPLRAPVAGIAMGLISGRVDGEMRYVTLTDISGSEDALGDMDFKVAGTSDFITAL 544

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q+D K+ GI  +++  AL  A+  RL IL+ +++V+ +S  Q+ E+ PRV  + IP  +I
Sbjct: 545 QLDTKLDGIPAHVLSEALAHARSARLAILDVLTRVI-DSPDQMSEYAPRVVRVKIPVQKI 603

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNK 621
             +IG  GKVI  I ++TGA+++I+DDGTV I SS     E A  M+ SI +   P V  
Sbjct: 604 GELIGPKGKVINSIQDETGAEISIEDDGTVYIGSSQADSSEKAVAMVNSIVNPVEPCVGS 663

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDF 677
            + G VVK M FG+F+     +DGL+HIS++        +    +V+  G  V V++   
Sbjct: 664 QFLGTVVKNMPFGSFISLVPGKDGLLHISEIRKMVDGRHLESVDEVLSVGQKVLVEVSKI 723

Query: 678 DDRGKIKL 685
           DDRGK+ L
Sbjct: 724 DDRGKLCL 731


>gi|220912209|ref|YP_002487518.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter
           chlorophenolicus A6]
 gi|254782702|sp|B8HG67|PNP_ARTCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219859087|gb|ACL39429.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arthrobacter chlorophenolicus
           A6]
          Length = 752

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 283/713 (39%), Positives = 420/713 (58%), Gaps = 41/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    E T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NG-QYVLNPRLDEDQGSLDLFV-----SG 180
           ++ A+S +  LSGLPF GP+ G +V  +   NG Q+V  P+  + + S+   V     +G
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVADENGSQWVAFPKHSQLENSVFNMVVAGRVAG 197

Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAI--------SKLAK 223
              A++MVE EA   S +++ +          +  G    KP I+A+        ++ AK
Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCDAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+ +D +D   +   +     + L     I +K  R    D LK ++ S  + + 
Sbjct: 258 PTVEFPVFLDYQD--DVYAAVEAAAADKLAAVFQIADKQERDTASDALKDEVTSSLAGQF 315

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F  +   VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F R
Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAGIA
Sbjct: 435 LAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL  ++  + ++  +L EF PRV  + IP D+I  VIG  GK+I  I E
Sbjct: 555 ALKQAREARLHILEVINSAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +++    +AAR  I +I +  VPE+ + Y G VVK   FGAFV
Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFV 673

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS+L    + +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 674 SLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLS 726


>gi|172040539|ref|YP_001800253.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           urealyticum DSM 7109]
 gi|257096683|sp|B1VDC1|PNP_CORU7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171851843|emb|CAQ04819.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           urealyticum DSM 7109]
          Length = 765

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 291/724 (40%), Positives = 411/724 (56%), Gaps = 54/724 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+DGAV A   E T++L+T    RS ++G DFFPLTV+ +ER Y
Sbjct: 42  DFGSRTLRFETGLLARQADGAVTAYLDEDTILLSTTTASRSPREGIDFFPLTVDVEERMY 101

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G+IPG + RRE RP  + IL +R+IDR +RP F K  +NE QV+I VM  D      V
Sbjct: 102 SAGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVKGLRNEVQVVITVMSIDPNEMYDV 161

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNPRLDE-DQGSLDLFVSG- 180
           +++  ASA+  LSGLP    V G ++      ++  GQ+V  P  ++  Q   +L V+G 
Sbjct: 162 LAINGASASTQLSGLPVSSSVGGVRMALVVDEEHPEGQWVAFPTREQVSQSVFELVVAGR 221

Query: 181 --------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV-----IEAISK- 220
                            AV+MVE  A     D V++ I  G            IEA    
Sbjct: 222 VTEPAKGGRGKKSQPNVAVMMVEAGAT----DNVVERIAEGAPAPTEAVVAEGIEAAKPF 277

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL----RVSC--------FIPEKYVRCKQI 268
           +A +CA +  + D+ D    E E+     ED+       C         I +K  R + +
Sbjct: 278 IATLCAAQDALRDAVDTESREFELFPPFDEDVYSAVEAECDADVAQIMTIADKQERDESL 337

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328
            +  ++ V     E     E EI +   D+   +VR  +L+   R+DGRD  ++RD+   
Sbjct: 338 AENMQETVDALI-EQFPERESEIRAAHNDLTRTIVRQRILEDGFRIDGRDHTSIRDLGIV 396

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           V LL R HGS+LF RG+TQ + V TL T + EQ +DSL       ++ HYNF P +TGE 
Sbjct: 397 VQLLPRAHGSALFERGETQILGVTTLDTLKMEQTIDSLGPETSKRYIHHYNFPPYSTGET 456

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
            R+G+P RREIGHG LA RA+ PVLP   +FPYT+R VSE   S+GS+SM +VC S+L+L
Sbjct: 457 GRVGSPKRREIGHGALAERALTPVLPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSL 516

Query: 449 MDAGVPISKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            +AGVP+  PVAGIAMGLV    DG + F+ L+DI G ED  G MDFKVAGT   +TA+Q
Sbjct: 517 YNAGVPLKAPVAGIAMGLVSGLVDGKEKFVSLTDILGAEDAFGDMDFKVAGTSEYVTALQ 576

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           +D K+ G+   ++  AL QA+  RL IL  M   + ++  Q+ E  PR+  ++IP ++I 
Sbjct: 577 LDTKLDGLPSEVLASALGQARSARLEILQLMEDAI-DAPDQMSELAPRITKISIPQNKIG 635

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKI 622
            VIG  GK I  I E+TGA ++I+DDGTV +++      EAA E I +I +   P+V   
Sbjct: 636 EVIGPKGKTINQITEETGANISIEDDGTVFVSAVGGEAAEAAIEKINAIANPQQPKVGDR 695

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G VVK   FGAF+     RDGL+HIS +  + R+ K  D +  GD + V++ D D+RG
Sbjct: 696 FLGTVVKTTAFGAFISLLPGRDGLLHISNIGGDRRIEKVEDELNVGDKIQVEIADIDNRG 755

Query: 682 KIKL 685
           KI L
Sbjct: 756 KISL 759


>gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 472

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/452 (51%), Positives = 321/452 (71%), Gaps = 4/452 (0%)

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            S +  E  + I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F 
Sbjct: 15  LSAIRSEFGEAISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFG 70

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT
Sbjct: 71  EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 130

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP  
Sbjct: 131 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 190

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL
Sbjct: 191 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 250

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M+
Sbjct: 251 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 310

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI 
Sbjct: 311 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 370

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  R
Sbjct: 371 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 430

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           V K +D++KEG  V V +LD D+RG+IKLS+K
Sbjct: 431 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSIK 462



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 26/194 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66
           RPL +E G +  ++ G+ L T GET  +V+AT+   R  +     +G+   P  ++Y   
Sbjct: 97  RPLNIEVG-VLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 155

Query: 67  TYAVGKIP--GGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDL 122
            ++VG+    GG  RRE       I   R+  RS++ +   +  +    +V+  + + + 
Sbjct: 156 PFSVGECGRMGGAGRRE-------IGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNG 208

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQ--YVLNPRL-DEDQ-GSLDLF 177
            SS  + S+  AS ALM +G+P + PV G  +  +  G+   +L   L DED  G +D  
Sbjct: 209 SSS--MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFK 266

Query: 178 VSGTQDAVLMVELE 191
           V+GT   V  ++++
Sbjct: 267 VAGTSKGVTALQMD 280


>gi|119960529|ref|YP_947337.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter aurescens
           TC1]
 gi|187470966|sp|A1R525|PNP_ARTAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119947388|gb|ABM06299.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase alpha chain [Arthrobacter
           aurescens TC1]
          Length = 750

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/719 (39%), Positives = 420/719 (58%), Gaps = 41/719 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    E T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRVIRFETGRLAKQAAGASMVYIDEDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI----NGQYVLNPRLDEDQGSLDLFV-----SG 180
           ++ A+S +  LSGLPF GP+ G +V  I      Q+V  P+  + + ++   V     +G
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALIADEQGSQWVAFPKHSQLENAVFNMVVAGRIAG 197

Query: 181 TQDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   S +++ +          +  G    KP I+A+ +          K
Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCEAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+ +D +D   +   +     + L     I +K  R    D+LK +++   + + 
Sbjct: 258 PTVEFPVFLDYQD--DVYAAVEAAAADKLAAVFQIADKQDRDNASDELKDEVLGALAGQF 315

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F  +   VVR  +L  +VR+DGR    +R ++A+V +L R HGS++F R
Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAGIA
Sbjct: 435 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL  ++  + ++  +L EF PRV  + IP D+I  VIG  GK+I  I E
Sbjct: 555 ALKQAREARLHILEVINAAI-DTPDELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +++    +AAR  I +I +  VPE+ + Y G VVK   FGAFV
Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFV 673

Query: 638 HFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
                +DGL+HIS+L    + +RV    DVV  G  V V++   DDRGK+ LS  V ++
Sbjct: 674 SLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLSPVVAEE 732


>gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
 gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
          Length = 705

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/689 (39%), Positives = 408/689 (59%), Gaps = 15/689 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG++A+ + GAV+   GET VL TVV D  L  G+DF PL V Y+E++YA GKIP 
Sbjct: 15  LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            ++RRE  P E E+L  R+IDRSIRPLF K Y  ETQ++ NV+  D E  P +++  AAS
Sbjct: 75  TFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLSSDGEQDPDILAANAAS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL LS +P+ GP+   ++  ++G++V+NP +D   GS L+L  S T +  LM+E +A +
Sbjct: 135 AALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSCTAERSLMIETQARE 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQMIKEDL 252
           ++      A+   H+E   +IE   +LA      K P+ +   D   L E++  + +E +
Sbjct: 195 ITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDAPVL-EKIRGLSEEHI 253

Query: 253 RVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           +     P   K+ R K +    + +      E+           F+ ++ ++VR  +  K
Sbjct: 254 KAVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDTVKKQIVRENVFQK 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R+DGR    VRD+  + G+    HGSSLF RG+TQ +  VTLG  ED Q +DS+ G  
Sbjct: 314 NIRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPP 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL-PQTAQFPYTLRIVSEI 429
           +  FM+HY+F P +  EV ++G  +RRE+GHG LA +A+  +L P+   FPY++R+ SE+
Sbjct: 374 KKRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPEDENFPYSVRVNSEV 433

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGD 482
             SDGSSSMATVCG SLALMDAG+P+   VAGI++GL+ + D       ++ IL+DI G 
Sbjct: 434 MASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLITNVDAETGEIKNYKILTDILGL 493

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFK+AGT  G+TA+Q+D+K+ G+  +I+  AL+ A   R  IL+ M K +S+ 
Sbjct: 494 EDHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEKEISKP 553

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R    + TPR   + I  + I  +IG  G  IR +   +GA++ + +DG V I S S   
Sbjct: 554 RDTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGEDGNVHIISRSEKS 613

Query: 603 IEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            + A+ MI ++      V + Y G V  + DFGAF+ F G + GL+HIS++S E V+  +
Sbjct: 614 FKVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLHISEISHEPVSSIA 673

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+  G  + V     D RG +K S K V
Sbjct: 674 DVLSVGQQITVLCTGRDFRGNLKFSRKAV 702


>gi|300933063|ref|ZP_07148319.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           resistens DSM 45100]
          Length = 787

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/735 (39%), Positives = 422/735 (57%), Gaps = 73/735 (9%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ E+G +ARQ+DGAV A   E T++L+T    R+ ++G DFFPLTV+ +ER Y
Sbjct: 61  DFGKRTVRFESGLLARQADGAVTAYLDEDTMLLSTTTASRNPREGIDFFPLTVDVEERMY 120

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QVI+ V+  D +    V
Sbjct: 121 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPTFVKGLRNEVQVIVTVLSMDPQEMYDV 180

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNPRLDEDQGS-LDLFVSG- 180
           +++ AASA+  LSGLP    V G ++      D+  GQ+V  P  ++   S  +L V+G 
Sbjct: 181 LAINAASASTQLSGLPVSSAVGGVRMALVVDEDHPEGQWVAFPTREQLSASVFELVVAGR 240

Query: 181 -----------------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNEC 211
                            T  AV+MVE  A               +E VV + I       
Sbjct: 241 VTEPVKGARGRRTKGGDTNVAVMMVEAGATADAVERIAQGAPAPTEAVVAEGI----EAA 296

Query: 212 KPVI-------EAISKLAKMCAKE-----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIP 259
           KP I       +A+S+  +  A+E     P   D   ++ +E E  + + E + ++    
Sbjct: 297 KPFIATLCEAQDALSRAIETEAREFELFPPFGEDV--YTSVEAETVEALGEIMSIAD--- 351

Query: 260 EKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
               + ++ D L + M +      E     EGEI +   D+  ++VR  +L++  R+DGR
Sbjct: 352 ----KQERDDALAENMQATVDELLEEFPEREGEIRAAHNDVTKQLVRQRILEEGFRIDGR 407

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
           D+ T+RD+   V L+ R HGS+LF RG+TQ + V TL T + EQ +DSL       ++ H
Sbjct: 408 DATTIRDLGIVVQLVPRAHGSALFERGETQILGVTTLDTLKMEQQIDSLGTETSKRYIHH 467

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           YNF P +TGE  R+G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+S
Sbjct: 468 YNFPPFSTGETGRVGSPKRREIGHGALAERALVPVIPSRDEFPYTIRQVSEAMGSNGSTS 527

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKV 493
           M +VC S+L+L +AGVP+  PVAGIAMGLV     + D ++ L+DI G ED  G MDFKV
Sbjct: 528 MGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGNKDKYVTLTDILGAEDAFGDMDFKV 587

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AGT+  +TA+Q+D K+ GI  +++  AL QA+  RL IL  M   + ++   + EF PR+
Sbjct: 588 AGTEDFVTALQLDTKLDGIPSDVLAEALGQARTARLEILQLMEDAI-DAPDDMSEFAPRI 646

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
             ++IP ++I  VIG  GK I  I E+TGA ++I++DGTV I+++      AA E I +I
Sbjct: 647 TTISIPANKIGEVIGPKGKTINQITEETGADISIEEDGTVFISATGGQAAAAAEEKINAI 706

Query: 614 TD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTV 670
            +  +P++   + G VVK   FGAFV     RDGL+HIS L  + R+ +  D V  GD +
Sbjct: 707 ANPQLPKIGDRFLGTVVKTTAFGAFVSLVPGRDGLIHISNLGGDRRIERVEDEVSVGDKI 766

Query: 671 WVKLLDFDDRGKIKL 685
            V++ D D+RGKI L
Sbjct: 767 EVEIADIDNRGKISL 781


>gi|46203340|ref|ZP_00051652.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 386

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/367 (62%), Positives = 284/367 (77%)

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391
           + R HGS+L    +TQA++  TLGT +DEQ  D L+G  R  FM+HYN  P + GE  RM
Sbjct: 1   MPRAHGSALLSLVETQALLFATLGTGQDEQISDHLAGEYREHFMLHYNCPPYSVGEAGRM 60

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G+P RREIGHG+LA RA+ P LP    FPYT+R+VSEITES+GSSSMATVCGSSLA+MDA
Sbjct: 61  GSPGRREIGHGKLAWRAMRPTLPTKESFPYTMRVVSEITESNGSSSMATVCGSSLAMMDA 120

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           GVP+ KPVAGIAMGL+K+G+DF +LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI  
Sbjct: 121 GVPLPKPVAGIAMGLIKEGNDFAVLSDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITS 180

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I+E IM +AL QAK GR+HIL EM+K L  +R  +    PR+  ++IP ++IR VIG GG
Sbjct: 181 ITEEIMKIALGQAKDGRIHILGEMNKGLDHARDSVSGNAPRITSISIPKEKIREVIGTGG 240

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           KVIR I EQTGAK++IDDDGT+K+AS      + A + IR I   PE+  IY G+VVKV+
Sbjct: 241 KVIREICEQTGAKIDIDDDGTIKVASVDADAAQRAIDWIRGIVAEPELGVIYNGKVVKVV 300

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           DFGAFV+F G+RDGLVHIS+L+ ERVAKT+DVVK+GD V VK+L FDDRGK+KLSMK VD
Sbjct: 301 DFGAFVNFLGSRDGLVHISELARERVAKTADVVKQGDVVKVKVLGFDDRGKVKLSMKQVD 360

Query: 692 QNTGKPI 698
           Q TG+ I
Sbjct: 361 QTTGEDI 367



 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 16/149 (10%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVM 118
           ++Y    Y+VG+       R   P   EI   ++  R++RP     + +    +V+  + 
Sbjct: 45  LHYNCPPYSVGEAG-----RMGSPGRREIGHGKLAWRAMRPTLPTKESFPYTMRVVSEIT 99

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GS 173
           + +  SS  + ++  +S A+M +G+P   PV G  +  I   N   VL+  L DED  G 
Sbjct: 100 ESNGSSS--MATVCGSSLAMMDAGVPLPKPVAGIAMGLIKEGNDFAVLSDILGDEDHLGD 157

Query: 174 LDLFVSGTQDAV--LMVELEANQLSEDVV 200
           +D  V+GT D V  L ++++   ++E+++
Sbjct: 158 MDFKVAGTVDGVTALQMDIKITSITEEIM 186


>gi|315638718|ref|ZP_07893892.1| polyribonucleotide nucleotidyltransferase [Campylobacter
           upsaliensis JV21]
 gi|315481342|gb|EFU71972.1| polyribonucleotide nucleotidyltransferase [Campylobacter
           upsaliensis JV21]
          Length = 736

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/717 (39%), Positives = 429/717 (59%), Gaps = 70/717 (9%)

Query: 22  RIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           ++A+Q+ G+VL   G++VVLATV   D+ ++  +DF PLTV Y E+ YAVG+IPGGY++R
Sbjct: 37  KVAKQAAGSVLMRVGKSVVLATVAREDKQVE--EDFLPLTVQYIEKAYAVGRIPGGYIKR 94

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           E++P +NE L +R+IDRS+RPLF K Y   TQ+++ V+  D E    V+S+ AAS AL L
Sbjct: 95  ETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASVALYL 154

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA------- 192
           SG+P + PV G ++  IN ++VLNP   +  + +LDL+V+G +D +LM+E+ A       
Sbjct: 155 SGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGVKDELLMIEMRALPSESEG 214

Query: 193 ----------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
                                 N+LSED +L A+       K ++   +   +   K   
Sbjct: 215 EAMVETSFAEALAGTSIYEQVINELSEDEILQALSVAK---KAILNGSNAYEEAFFKHRK 271

Query: 231 VIDSKDFSKLEE-EMSQMIKEDLRVSC-FIPEKYVRCKQIDDLKKKMVSYFSSEH--SSW 286
             + +   +LE  E+ + IK++      F   +  + ++  +L+K +      E+    +
Sbjct: 272 KEELELKEELENVELFEFIKQNYTNEVKFAINQMAKSERASELEKIVKELMKLENIIDKY 331

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           ++ ++ +    ++ ++VR  +L ++ R DGR+   VR I  +  +L   HGS LF RG T
Sbjct: 332 SQEDVFNALSKVKKELVRAQILKERKRADGRNLNEVRAIEIETNILPNAHGSCLFTRGQT 391

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           QA+VV TLG   D Q VD LS  ++N     FM++YNF   + GE S + AP RRE+GHG
Sbjct: 392 QALVVATLGGENDAQMVDLLS--EKNPISERFMVNYNFPGFSVGEASPIKAPGRRELGHG 449

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP  K VAG+
Sbjct: 450 NLAKRALYPSVDEN--YPYVVRLVSEILESNGSSSMATVCGGSLALRAAGVPSIKLVAGV 507

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGLV + +D+ IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGI ENI+  AL 
Sbjct: 508 AMGLVLEDNDYAILTDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGIDENILKNALY 567

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M +  S+  +   E  P++E+ ++ P +I ++IG  GK I+ I+E+ G
Sbjct: 568 QAREARLHILDLMEEANSQIIIN-EEVLPKLELFSVEPSKIVDIIGQAGKTIKEIIEKFG 626

Query: 583 AKVNID-DDGTVKIASSSLAEIEAAREMIRSIT--------DVPEVN---KIYKGQVVKV 630
             +++D + G VKIA +   +I+AA++ I SIT        D+ +     + ++ +V KV
Sbjct: 627 VSIDLDREKGEVKIAGNQSEQIKAAKDYIISITSKGKKFSKDLTQFKVGEEFFEAEVKKV 686

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             FGAF+      DGL+H S++ T+        + E D V VK+ +  + GKI + +
Sbjct: 687 APFGAFIALKDGVDGLLHSSKMKTK--------LSENDKVDVKISEIKN-GKISVDL 734


>gi|226329676|ref|ZP_03805194.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
 gi|225202862|gb|EEG85216.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
          Length = 454

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/434 (51%), Positives = 312/434 (71%)

Query: 260 EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319
           +K  R +QI+ ++ ++++   +E  + +E EI  +F  ++  +VR  +L  + R+DGR+ 
Sbjct: 7   KKQERYEQIEAIRDEVIATLLAEDETLDEAEISEIFSGLEKNIVRARVLAGEPRIDGREK 66

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + VR +  + GLL RTHGS+LF RG+TQA+V  TLGT  D Q +D + G   + F++HYN
Sbjct: 67  DMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTDTFLLHYN 126

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F P + GE   MG+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA
Sbjct: 127 FPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMA 186

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           +VCG+SLALMDAGVPI + VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+ +G
Sbjct: 187 SVCGASLALMDAGVPIKESVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRNG 246

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           ++A+QMD+KI GI+  IM +AL QAK  RLHIL  M   +S+ R  + EF PR+  + I 
Sbjct: 247 VSALQMDIKIEGITREIMQVALNQAKSARLHILGVMEDAISKPRADISEFAPRIHTIKIN 306

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++S  + + A   I  IT   EV
Sbjct: 307 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATSGDQAKQAIARIEEITAEVEV 366

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K SD ++ G  V VK+L+ D 
Sbjct: 367 GRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVSDYLEMGQEVPVKVLEIDR 426

Query: 680 RGKIKLSMKVVDQN 693
           +G+I+LSMK    N
Sbjct: 427 QGRIRLSMKEAQAN 440



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 28/195 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----------DFFPLTVNY 63
           R L + TG + R + G+ L T GET  L T     + +D Q          D F L  N+
Sbjct: 70  RALDIRTGLLPR-THGSALFTRGETQALVTATLG-TARDAQTIDDIMGEHTDTFLLHYNF 127

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+   G +     P   EI   R+  R +  +      +    +V+  + + +
Sbjct: 128 P--PYSVGET--GMM---GSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESN 180

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDL 176
             SS  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L DED  G +D 
Sbjct: 181 GSSS--MASVCGASLALMDAGVPIKESVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDF 238

Query: 177 FVSGTQDAVLMVELE 191
            V+G+++ V  ++++
Sbjct: 239 KVAGSRNGVSALQMD 253


>gi|227497565|ref|ZP_03927791.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832965|gb|EEH65348.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
           urogenitalis DSM 15434]
          Length = 789

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/717 (38%), Positives = 410/717 (57%), Gaps = 36/717 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R   + IL  R+IDR +RP F K  +NE QV+  V+    + +  V+
Sbjct: 80  AGRIPGSFFRREGRAGTSAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDAYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AAS +  ++GLPF GPV G ++  I+GQ+V  PR  E ++ + ++ V+G        
Sbjct: 140 AINAASMSTQIAGLPFAGPVAGTRLALIDGQWVAFPRYSELERATFNMVVAGRVLEDGDV 199

Query: 181 ---------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
                    T++A  ++   A   +E VV  A+       K + EA  K+AK  +K    
Sbjct: 200 AIMMVEAGATENAWDLIRAGATAPTEPVVASALEAAKPHIKALCEAQMKVAKHASKPTAE 259

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D  D  + E         DL  +     K  R    D ++  +++  + +  +  
Sbjct: 260 FPLYLDYSD-EQYEAVEKAATAHDLAGAIATEGKQARDLATDAVRDAVLADLAEQFGTEE 318

Query: 288 E-GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +   + + F+ +  K+VR   L + +RMDGR  + +R + A+V +L R HGS++F RG+T
Sbjct: 319 DVKALKAAFKSVTKKLVRHRTLTEGIRMDGRGLKDIRTLGAEVEVLPRVHGSAIFERGET 378

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D LS      +M  Y F P +TGE  R+GAP RREIGHG LA 
Sbjct: 379 QIMGVTTLNMLRMEQQIDDLSPITHKRYMHQYIFPPFSTGETGRVGAPKRREIGHGALAE 438

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL
Sbjct: 439 RALVPVIPSRDEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 498

Query: 467 VK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    DG+  +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+  +++  AL 
Sbjct: 499 MHEEIDGETKWATLTDILGSEDAFGDMDFKVAGTREFITALQLDTKLDGLPSDVLAGALG 558

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  R  IL+ M + + +   ++    PRV  + IP D+I  VIG  GK+I  I E TG
Sbjct: 559 QARDARFFILDVMEQAI-DGPDEMAPTAPRVLTVHIPVDKIGEVIGPKGKMINQIQEDTG 617

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + ++DDGTV I +S     EAAR+ + +I +  +PE+ + + G VVK   FGAFV   
Sbjct: 618 ADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFGAFVSLT 677

Query: 641 GARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L   + D+ 
Sbjct: 678 PGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLTDEQ 734


>gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 719

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           S4-378]
          Length = 520

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/521 (45%), Positives = 339/521 (65%), Gaps = 6/521 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++    +   E+ +   GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILXXXKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQI 520


>gi|168061313|ref|XP_001782634.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665867|gb|EDQ52537.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 817

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 271/713 (38%), Positives = 417/713 (58%), Gaps = 24/713 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E     +  ETG++AR + GAV+   GET VL TVV D     G+DF PL V Y+E+ 
Sbjct: 88  EAEVGNMKMSFETGKLARFASGAVVVGVGETKVLVTVVADYKFDGGKDFLPLQVEYREKQ 147

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIP  ++RRE  P E E+L  R+IDRS+RPLF K +  ++Q+I NV+  D +  P 
Sbjct: 148 YAQGKIPATFMRREGAPKERELLCGRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPD 207

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           V+++ AASAAL++S +P++GP+   ++  + G++++NP +DE   S L+L  + T +  +
Sbjct: 208 VLAVNAASAALVISDIPWKGPIGCVRIGRVKGKFIVNPNMDEFSLSDLNLVYACTAEKTV 267

Query: 187 MVELEANQLS-EDVVLDAIIFGHNECK---PVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           M+E +A +++ +D V    +      K   P +E  +K+A +    P++    +   + E
Sbjct: 268 MIETQAREITNQDYVAALHLAHAEATKLIPPQLELAAKVAVLKRPLPVLTVPPE---VLE 324

Query: 243 EMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           ++  + K  +      P+  K+ R + +  +++++ +   SE    +   +   F+ ++ 
Sbjct: 325 KVRSLAKIAIEAVMGNPQFGKFERGQTLGAIEEEVKNRLISEGDEVSVKLLPYAFDAVKK 384

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +V+R  + +K +R+DGR    VR++  + G     HGSS+F RG+TQ +  VT+G  +D 
Sbjct: 385 EVLRRNIFEKGMRVDGRGLNQVRELQCEAGTYPALHGSSVFSRGNTQVLCTVTIGAPDDA 444

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +DSL G  R  FM+HY+F P +  EV R G  +RRE+GHG LA +A+  +LP    FP
Sbjct: 445 QRLDSLVGIDRKRFMVHYSFPPFSINEVGRTGGLNRREVGHGTLAEKALVALLPPEEDFP 504

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DF 473
           Y++R+ SE   SDGSSSMATVCG SLALMDAG+P+   V  +++GLV   D       ++
Sbjct: 505 YSVRVTSECLASDGSSSMATVCGGSLALMDAGIPLRSHVGAVSVGLVSVSDPETGRVTEY 564

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  AL+ A  GR  IL+
Sbjct: 565 RILTDILGLEDHLGDMDFKIAGTKKGITAIQLDIKPAGIPLHILCEALEPALVGRTQILD 624

Query: 534 EMSKVLSESRLQLG-EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            M +V+S  R     E  PR   M I  D I  +IG  G  I+ I + + A++NI  DG 
Sbjct: 625 FMEQVISSPRDSTARENLPRSGTMNIQQDSIGRLIGPQGSNIKNIQKVSDARINISGDGV 684

Query: 593 VKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           V I +   A  + A++M+  S+    EV   Y  +VV + DFGAF+   G   GL+HIS+
Sbjct: 685 VTIFARDQASFDLAKQMVEASVGKEVEVGGTYSARVVAIKDFGAFMELNGGYQGLLHISE 744

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-----VVDQNTGKPIV 699
           ++ ER+ + SD +  G  + V  +  D RG +KLS K     VV +N  +P +
Sbjct: 745 IAHERIERVSDYLSIGQELSVVCIGRDLRGNLKLSRKMTLPLVVPENATQPPI 797


>gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 719

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/693 (39%), Positives = 409/693 (59%), Gaps = 82/693 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP   E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNGELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYIIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            + ++G V K+  FGAFV      DGL+H S++
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKI 690


>gi|68536209|ref|YP_250914.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           jeikeium K411]
 gi|123650906|sp|Q4JV61|PNP_CORJK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68263808|emb|CAI37296.1| polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium
           K411]
          Length = 764

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 291/745 (39%), Positives = 415/745 (55%), Gaps = 71/745 (9%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG +ARQ+DGAV A   E T++L+T    R  ++G DFFPLTV+ +ER Y
Sbjct: 30  DFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMY 89

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VG+IPG + RRE RP  + IL +R+IDR +RP F +  +NE QVI+ V+  D +    V
Sbjct: 90  SVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRYDV 149

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNP-RLDEDQGSLDLFVSG- 180
           +++  ASA+  LSGLP  GPV G ++      D+  GQ+V  P R  E++   +L V+G 
Sbjct: 150 LAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVAGR 209

Query: 181 -----------------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
                                     AV+MVE  A     D V++ I  G     P  E 
Sbjct: 210 VTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGAT----DNVVERIAEGA--PAPTEEV 263

Query: 218 ISK--------LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSC------------F 257
           +++        +A +C  +  +  + D    E E+     ED+  S              
Sbjct: 264 VAQGIEAAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDIMA 323

Query: 258 IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
           I +K  R + +    +  V     E     E EI +   ++   VVR  +L+   R+DGR
Sbjct: 324 IADKQERDEALAANMQANVDELLPEFPE-REAEIRAAHNEVTKAVVRRRILEDGFRIDGR 382

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
           DS T+RD+   V L+ R HGS+LF RG+TQ + V TL   + EQ +DSL       ++ H
Sbjct: 383 DSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYIHH 442

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           YNF P +TGE  R+G+P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+S
Sbjct: 443 YNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGSTS 502

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLV-----KDG-DDFIILSDISGDEDHLGHMDF 491
           M +VC S+L+L +AGVP+  PVAGIAMGLV     K G D ++ L+DI G ED  G MDF
Sbjct: 503 MGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDMDF 562

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           KVAGT   +TA+Q+D K+ GI  +++  ALQQA+  RL IL  M + + +S   + +  P
Sbjct: 563 KVAGTPDFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAI-DSPDDMSDLAP 621

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
            +  + IP ++I  VIG  GK I  I E+TGA + I+DDGTV I++        A E I 
Sbjct: 622 HITSINIPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEKIN 681

Query: 612 SITDV--PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGD 668
           +I +   P+V   + G VVK   FGAFV     RDGL+HIS L  + R+ +  D V  GD
Sbjct: 682 AIANPQQPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSVGD 741

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQN 693
            + V++ D D+RGKI  S+ +V++N
Sbjct: 742 KLEVEIADIDNRGKI--SLVLVEEN 764


>gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 719

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/692 (39%), Positives = 409/692 (59%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G+++VLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSIVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 305 ITK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYIIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|332670053|ref|YP_004453061.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas fimi ATCC 484]
 gi|332339091|gb|AEE45674.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas fimi ATCC 484]
          Length = 742

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 283/707 (40%), Positives = 414/707 (58%), Gaps = 36/707 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+  A   GET++L+     +  KD  DFFPLT++ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAAGSAAAYLDGETMLLSATTAGKHPKDQFDFFPLTIDVEERQYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R++DR +RPLF K  +NE QV+I V+    + +   +
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRLVDRPLRPLFVKGLRNEVQVVITVLAIHPDDAYDTL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AAS +  LSGLPF GPV G ++  ++GQ+V  PR  E ++ + D+ V+G       A
Sbjct: 138 AINAASISTQLSGLPFSGPVGGVRIALVDGQWVAFPRYSERERATFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE---- 228
           + M+E EA + S +++ +         +  G    KP I    EA  +LA   AKE    
Sbjct: 198 IAMIEAEAPEKSWNLIQEGATAPTEEVVAQGLEAAKPFIKVLVEAQQELAAKAAKETQVF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P   D +D       +       L  +  I +K  R  ++D++K ++V   + E     E
Sbjct: 258 PTFPDYQD--DAFAAVEAAATTSLGEALSIADKQTRENRLDEIKAEVVGQLA-EQFEGRE 314

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + +  +Q K++R  +L    R+DGR    +R +SA+V +L R HGS++F RG+TQ 
Sbjct: 315 KELSAAYRSVQKKLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRVHGSAIFERGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 375 LGVTTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV 
Sbjct: 435 LMPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVS 494

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL QA
Sbjct: 495 DTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLGGALTQA 554

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  RL IL+ +++ +     ++  F PRV  + +P D+I  VIG  GK+I  I E+TGA 
Sbjct: 555 KEARLAILDVIAEAIDVPD-EMSPFAPRVITVKVPVDKIGEVIGPKGKMINQIQEETGAD 613

Query: 585 VNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGTV I ++    AE   A     +   +PEV + + G VVK   FGAFV     
Sbjct: 614 ISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEVGERFVGTVVKTTTFGAFVSLSPG 673

Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 KDGLLHISQIRKLVGGKRVENVEDVLSVGQKVQVEIGEIDPRGKLSL 720


>gi|289705304|ref|ZP_06501702.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micrococcus luteus SK58]
 gi|289557967|gb|EFD51260.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micrococcus luteus SK58]
          Length = 753

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 282/721 (39%), Positives = 417/721 (57%), Gaps = 39/721 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    E T +L+     +S ++G DFFPLTV+ +ER YA
Sbjct: 18  YGKRTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV++ V     +     V
Sbjct: 78  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDEDQGS-LDLFVSGT-- 181
           ++ AAS +  LSGLPF GP+ G ++  ++      Q+V  P+  + +G+  ++ V+G   
Sbjct: 138 AINAASLSTQLSGLPFSGPIGGVRMALMDDGSGTRQWVAFPKHSQLEGAVFNMAVAGRVV 197

Query: 182 --QDAVLMVELEANQLSEDVVLDA---------IIFGHNECKPVI----EAISKLAKMCA 226
               A++MVE EA   S  +V +          +  G    KP I    EA + L K   
Sbjct: 198 GDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALCEAQADLVKRAG 257

Query: 227 KEPIVIDS-KDFSKLEEEMSQMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHS 284
           K+P+ +   +D+        + +  D     F I +K  R    D    +++   + E  
Sbjct: 258 KDPVDVPVFQDYQDDAYAAVEKLATDRLAEIFSIGDKQERESASDAYLLEVLEELAGEGK 317

Query: 285 SWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            + E  GEI   +  +  ++VR  +L  +VR+DGR    +R ++A+V +L R HGS++F 
Sbjct: 318 DFAERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFE 377

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +DSL+      +M HYNF P +TGE  R+G+P RREIGHG
Sbjct: 378 RGETQIMGVTTLNMLKMEQQIDSLAPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 437

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGI
Sbjct: 438 ALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGI 497

Query: 463 AMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++ 
Sbjct: 498 AMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLA 557

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL QA+  RLHIL+ ++  + ++  ++    PR+  + IP D+I  VIG  G +I  I 
Sbjct: 558 AALTQAREARLHILSVLNAAI-DAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQ 616

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           + TGA + I+DDGTV I ++  A  EAAR  + +I +  VPEV + Y G VVK+  FGAF
Sbjct: 617 DDTGADITIEDDGTVLIGATDGASAEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGAF 676

Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V     +DGL+HIS+L      +RV    DV+  G  V V++   DDRGK+ LS  V + 
Sbjct: 677 VSLTPGKDGLLHISELRKLNEGKRVDDVEDVLGVGQKVQVEITKIDDRGKLSLSPVVAES 736

Query: 693 N 693
           +
Sbjct: 737 D 737


>gi|260578909|ref|ZP_05846813.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602961|gb|EEW16234.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 764

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 289/739 (39%), Positives = 410/739 (55%), Gaps = 69/739 (9%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG +ARQ+DGAV A   E T++L+T    R  ++G DFFPLTV+ +ER Y
Sbjct: 30  DFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMY 89

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VG+IPG + RRE RP  + IL +R+IDR +RP F +  +NE QVI+ V+  D +    V
Sbjct: 90  SVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRYDV 149

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQV------DYINGQYVLNP-RLDEDQGSLDLFVSG- 180
           +++  ASA+  LSGLP  GPV G ++      D+  GQ+V  P R  E++   +L V+G 
Sbjct: 150 LAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVAGR 209

Query: 181 -----------------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
                                     AV+MVE  A     D V++ I  G     P  E 
Sbjct: 210 VTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGAT----DNVVERIAEGA--PAPTEEV 263

Query: 218 ISK--------LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSC------------F 257
           +++        +A +C  +  +  + D    E E+     ED+  S              
Sbjct: 264 VAQGIEAAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDIMA 323

Query: 258 IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
           I +K  R + +    +  V     E     E EI +   ++   VVR  +L+   R+DGR
Sbjct: 324 IADKQERDEALAANMQANVDELLPEFPE-REAEIRAAHNEVTKAVVRRRILEDGFRIDGR 382

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
           DS T+RD+   V L+ R HGS+LF RG+TQ + V TL   + EQ +DSL       ++ H
Sbjct: 383 DSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYIHH 442

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           YNF P +TGE  R+G+P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+S
Sbjct: 443 YNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGSTS 502

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLV-----KDG-DDFIILSDISGDEDHLGHMDF 491
           M +VC S+L+L +AGVP+  PVAGIAMGLV     K G D ++ L+DI G ED  G MDF
Sbjct: 503 MGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDMDF 562

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           KVAGT   +TA+Q+D K+ GI  +++  ALQQA+  RL IL  M + + +S   + +  P
Sbjct: 563 KVAGTPDFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAI-DSPDDMSDLAP 621

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
            +  + IP ++I  VIG  GK I  I E+TGA + I+DDGTV I++        A E I 
Sbjct: 622 HITSINIPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEKIN 681

Query: 612 SITDV--PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGD 668
           +I +   P+V   + G VVK   FGAFV     RDGL+HIS L  + R+ +  D V  GD
Sbjct: 682 AIANPQQPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSVGD 741

Query: 669 TVWVKLLDFDDRGKIKLSM 687
            + V++ D D+RGKI L +
Sbjct: 742 KLEVEIADIDNRGKISLVL 760


>gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 720

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/692 (39%), Positives = 408/692 (58%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++++  
Sbjct: 257 KNEIEHPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEILNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 305 IAK--DWSEESVLNTLAKVKHKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P L +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSLDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+    +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIIEKFDVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|315604465|ref|ZP_07879531.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314171|gb|EFU62222.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 780

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 289/722 (40%), Positives = 423/722 (58%), Gaps = 46/722 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           R ++ ETGR+A+Q+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA G+
Sbjct: 22  RTVRFETGRLAKQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE R     IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+++ 
Sbjct: 82  IPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVLAIN 141

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG--------TQD 183
           AAS +  ++GLPF GP+ G ++  I+ Q+V  PR  E ++   ++ V+G        T+D
Sbjct: 142 AASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDGTED 201

Query: 184 -AVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE              A   +EDVV D +       K + EA  K+A+  +KE  
Sbjct: 202 VAIMMVEAGGGKNEWDLIQAGATAPTEDVVADGLEAAKPFIKALCEAQMKVAEKASKETA 261

Query: 229 --PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
             P+ +D  D  ++ ++E   + I + L        K  R + +D +K++M+   + E  
Sbjct: 262 EFPLFLDYTDEEYAAVQEWAGEKIAQALLTEG----KLARDEAVDAVKEEMLEALA-ERF 316

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E  + + F  ++   +R   L +++RMDGR    +R +SA+V +L R HGS+LF RG
Sbjct: 317 PEGEKSLKAAFRSLEKATIRGRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRG 376

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREIGHG L
Sbjct: 377 ETQILGVTTLAMLRMEQQIDNLSPVNSKRYMHQYNFAPFSTGEVGRVGSPKRREIGHGDL 436

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP    FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 437 AERALLPVLPSREDFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAM 496

Query: 465 GLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GL+    DG    + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  A
Sbjct: 497 GLMTGEVDGQAKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVLRAA 556

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA+  RL IL+ +S+ + +   ++    PR+  + +P D+I  VIG  GK+I  I ++
Sbjct: 557 LAQARDARLAILDLISQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQIQDE 615

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA V I+DDGTV IAS+  A  EAAR M+  I +  +PEV + + G VVK   FGAFV 
Sbjct: 616 TGADVTIEDDGTVYIASADGASAEAARTMVNQIANPQMPEVGERFVGTVVKTTSFGAFVS 675

Query: 639 FCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
               +DGL+HISQ    +  +R+    DV++ G  V V++ +  DRGK+ L   V+D   
Sbjct: 676 LTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEINEIGDRGKLSLH-AVIDGEA 734

Query: 695 GK 696
           G+
Sbjct: 735 GE 736


>gi|154509089|ref|ZP_02044731.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798723|gb|EDN81143.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
           17982]
          Length = 781

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 287/725 (39%), Positives = 426/725 (58%), Gaps = 46/725 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+
Sbjct: 79  AGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AAS +  ++GLPF GP+ G ++  I+ Q+V  PR  E ++   ++ V+G        
Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDG 198

Query: 181 TQD-AVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           ++D A++MVE              A   +ED+V D +       K + EA  K+A+  +K
Sbjct: 199 SEDVAIMMVEAGGGKNQWELIQAGATAPTEDIVADGLEAAKPFIKVLCEAQLKVAEKASK 258

Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
           E    P+ +D  D  ++ +EE  ++ + + L        K  R + +D +K++M+   + 
Sbjct: 259 ETVEFPLFLDYTDEEYAAVEEYAAEKVAQALLTEG----KLARDEAVDAVKEEMLEALA- 313

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           E    +E  + + F  ++   +R   L +++RMDGR    +R +SA+V +L R HGS+LF
Sbjct: 314 ERFPESEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALF 373

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREIGH
Sbjct: 374 QRGETQILGVTTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEVGRVGSPKRREIGH 433

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PVLP    FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PVAG
Sbjct: 434 GDLAERALVPVLPSREDFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAG 493

Query: 462 IAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGL+    DG    + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++
Sbjct: 494 IAMGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVL 553

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA+  RL IL+ +++ + +   ++    PR+  + +P D+I  VIG  GK+I  I
Sbjct: 554 RAALAQARDARLAILDLINQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQI 612

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            ++TGA V I+DDGTV IASS  A  EAAR M+  I +  +PEV + + G VVK   FGA
Sbjct: 613 QDETGADVTIEDDGTVYIASSDGASAEAARTMVNQIANPQMPEVGERFVGTVVKTTSFGA 672

Query: 636 FVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FV     +DGL+HISQ    +  +R+    DV++ G  V V++ +  DRGK+ L   V+D
Sbjct: 673 FVSLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGDRGKLSLH-AVID 731

Query: 692 QNTGK 696
              G+
Sbjct: 732 GEAGE 736


>gi|319441544|ref|ZP_07990700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           variabile DSM 44702]
          Length = 762

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 290/727 (39%), Positives = 420/727 (57%), Gaps = 57/727 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L  ETG +ARQ+DG+V A   + T++L+T    +  ++  DFFPLTV+ +ER Y
Sbjct: 37  DFGTRTLTFETGLLARQADGSVTAYLDDDTMLLSTTTASKHPRENLDFFPLTVDVEERMY 96

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL  R+IDR +RP F+K  +NE QV++ V+  D E    V
Sbjct: 97  AAGRIPGSFFRREGRPGTEAILACRLIDRPLRPTFAKGLRNEVQVVVTVLSMDPEDMYDV 156

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG- 180
           V++ AASA+  LSGLP  GPV G ++  +      +GQ+V  P R   +Q   +L V+G 
Sbjct: 157 VAINAASASTQLSGLPVSGPVGGVRMALVVDEAHADGQWVAFPTREQHEQAVFELVVAGR 216

Query: 181 --------------TQDAVLMVELEANQLSEDVVLDAIIFGHNEC--KPVIEAISK---- 220
                           D V+++ +EA   +E+VV + I  G      K V E I      
Sbjct: 217 VSEVKKPRGRRKAVPGDDVVVMMVEAGA-TENVV-ERIAEGAPAPTEKIVAEGIEAARPF 274

Query: 221 LAKMCAKEPIVIDSKDFSKLEE-EMSQMIKED------------LRVSCFIPEKYVRCKQ 267
           +A++C  +  ++D+ + S   E E+     ED            LR    I +K  R   
Sbjct: 275 IAELCGAQAALVDAVEASHAREFELFPAFGEDVYASVESESAEALRGIMAIADKQERD-- 332

Query: 268 IDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDI 325
            D L   M +   +  E     E EI +   ++  ++VR  +L    R+DGRD+  +RD+
Sbjct: 333 -DALSANMDAAVDALGEQFEGRESEIRNAHNEVSRQIVRERILTDGFRIDGRDTTAIRDL 391

Query: 326 SAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT 385
              + L+ R HGS+LF RG+TQ + V TL   + EQ +DSL       ++ HYNF P +T
Sbjct: 392 GVMIDLVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPVTSKRYIHHYNFPPYST 451

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSS 445
           GE  R+G+P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+SM +VC S+
Sbjct: 452 GETGRVGSPKRREIGHGALAERALLPVVPSREVFPYTIRQVSEALGSNGSTSMGSVCAST 511

Query: 446 LALMDAGVPISKPVAGIAMGLVK---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGIT 501
           L++ +AGVP+  PVAGIAMGLV    DG D ++ L+DI G ED  G MDFKVAGT   IT
Sbjct: 512 LSMYNAGVPLKAPVAGIAMGLVTGEVDGKDTYVTLTDILGAEDAFGDMDFKVAGTADFIT 571

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561
           A+Q+D K+ GI   ++  AL QA+  RL IL+ M++ + E   ++ +F PR+  + IP +
Sbjct: 572 ALQLDTKVDGIPAKVLAEALSQARGARLEILSTMAEAI-EGPEEMSDFAPRITTVKIPQN 630

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEV 619
           +I  +IG  GK I  I E+TGA ++I+DDGTV +++++    EAA + + SI +  +P+V
Sbjct: 631 KIGELIGPKGKTINQITEETGANISIEDDGTVFVSAAAGKAAEAALDKVNSIANPQLPKV 690

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD 678
              + G VVK   FGAF+     RDGL+HIS L  + RV K  D V  GD++ V++ D D
Sbjct: 691 GDRFLGTVVKTTAFGAFISLLPGRDGLLHISNLGGDRRVEKVEDEVSVGDSLEVEIADID 750

Query: 679 DRGKIKL 685
           +RGKI L
Sbjct: 751 NRGKISL 757


>gi|300780976|ref|ZP_07090830.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           genitalium ATCC 33030]
 gi|300532683|gb|EFK53744.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           genitalium ATCC 33030]
          Length = 759

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 289/724 (39%), Positives = 421/724 (58%), Gaps = 55/724 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+ G+V  TY   +T++L+TV      ++G DFFPLTV+ +ER 
Sbjct: 33  DFGERTIRFETGQLARQAGGSV-TTYLDDDTMLLSTVTASNQPREGFDFFPLTVDVEERM 91

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ VM  + E    
Sbjct: 92  YAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSWNPEEYYD 151

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG 180
           VV++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +  ++ V+G
Sbjct: 152 VVAINGASAATQLSGLPVSGAVGGVRMALIADDQHPEGQWVAFPNHEQHEAAVFEMVVAG 211

Query: 181 -----------TQD-AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----E 216
                       QD A++MVE  A   +  ++           +  G    KP I    E
Sbjct: 212 RIVEKKKGRKKVQDVAIMMVEAGAGANAVKLIDGGAPAPTERTVAEGLEAAKPFIQTLCE 271

Query: 217 AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCF----IPEKYVR----CKQI 268
           A + LA   AKE    D   F    +E+   +++           IP K+ R     + +
Sbjct: 272 AQNALADKSAKE--TQDFPLFPPYSDEVFDAVEKKASKKLSKLLTIPGKHERDDATNEYM 329

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328
           ++++  ++  F+ E +S    EI + +  +  ++VR  +L +  R+DGR    +RD+  +
Sbjct: 330 EEIEADLLETFAGEDASK---EIRAAYNAVMKQIVRDKILSEGFRIDGRGVTDIRDLEVE 386

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           V L+ R HGSSLF RG+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE 
Sbjct: 387 VELIPRAHGSSLFERGETQILGVTTLDMLKMEQQLDSLHPETSKHYIHHYNFPPYSTGET 446

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
            R+G+P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+SM +VC S+L+L
Sbjct: 447 GRVGSPKRREIGHGALAERALIPVIPSKEDFPYTIRQVSEALGSNGSTSMGSVCASTLSL 506

Query: 449 MDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            +AGVP++ PVAGIAMGLV    DG+  ++ L+DI G ED  G MDFKVAGT   ITA+Q
Sbjct: 507 YNAGVPLAAPVAGIAMGLVSGEVDGETKYVALTDILGAEDAFGDMDFKVAGTSEFITALQ 566

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           +D K+ GI  +++  AL QAK  R  IL+ M++V+ E   ++    P++  + +P  +I 
Sbjct: 567 LDTKLDGIPSDVLASALDQAKEARETILDTMAEVI-EGPDEMSALAPKITTVRVPVSKIG 625

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKI 622
            VIG  GK I  I E TGA V+I+DDGT+ +++++    +AA E I SI +   P+V + 
Sbjct: 626 EVIGPKGKTINQITEDTGADVSIEDDGTIYVSAATGEAADAAIEQINSIANPQQPKVGER 685

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRG 681
           Y G VVK + FGAFV     RDGLVHIS+L  + R+    DVV  GD + V++ D D+RG
Sbjct: 686 YLGTVVKTVAFGAFVSLTPGRDGLVHISKLGGDKRIENVEDVVNVGDKIEVEIADIDNRG 745

Query: 682 KIKL 685
           KI L
Sbjct: 746 KISL 749


>gi|329944611|ref|ZP_08292751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530164|gb|EGF57047.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 790

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 282/723 (39%), Positives = 420/723 (58%), Gaps = 48/723 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  E Q  +  + V+G    + D 
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227
           A++MVE  A + + +++        +A++  G    KP I+A+ +         +K  A+
Sbjct: 200 AIMMVEAGATEHAWELINAGSVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 228 EPIVIDSKD--FSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            P+ +D  D  +  +E+      ++  I  + + +  +    VR    D++  ++   F 
Sbjct: 260 FPLYLDYSDEQYDAVEKAAEAHGLAGAIATEGKQARDLATDAVR----DEVLAELAESFP 315

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
           +E  +     + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++
Sbjct: 316 TEEDTKA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIG
Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 433 HGNLAERALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492

Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL   V DG+  +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   +
Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ +++ + +S  ++    PRV  + IP D+I  VIG  GK+I  
Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DSPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E TGA + ++DDGTV I +S     EAAR+ + +I +  +PE+ + + G VVK   FG
Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671

Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AFV     +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L   + 
Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731

Query: 691 DQN 693
           D+ 
Sbjct: 732 DEQ 734


>gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 719

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/692 (39%), Positives = 410/692 (59%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIKL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++ +  
Sbjct: 257 KNEIEYPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEISNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR I+ +  +L   HGS 
Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPINIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +  ++  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEA-AKKIIVNEEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFEL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|227504840|ref|ZP_03934889.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           striatum ATCC 6940]
 gi|227198531|gb|EEI78579.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           striatum ATCC 6940]
          Length = 746

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 284/717 (39%), Positives = 422/717 (58%), Gaps = 45/717 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG +ARQ+ G+V     E T++L+T       ++G DFFPLTV+ +ER Y
Sbjct: 28  DFGTRTIRFETGLLARQAGGSVTTYLDEDTMLLSTTTASNQPREGFDFFPLTVDVEERMY 87

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+    E    V
Sbjct: 88  AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMAPEEYYDV 147

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG- 180
           +++  ASA+  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 148 IAINGASASTQLSGLPVSGAVGGVRMALIADDKHPKGQWVAFPNHEQHERALFEMVVAGR 207

Query: 181 ------TQD-AVLMVELEA-NQLSEDVVLDA-------IIFGHNECKPVI----EAISKL 221
                  +D A++MVE  A   ++E +   A       +  G    KP I    EA + L
Sbjct: 208 IVKKGNKEDVAIMMVEAGAGTNVAERIKEGAPAPQESTVAEGLEAAKPFIKTLCEAQAGL 267

Query: 222 AKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           A+  AKE    P+     D  F+ +E+  S+ +++ L +           + ++ ++  +
Sbjct: 268 AERAAKETQEFPLFPPYTDDVFAAVEKAASKKLEKLLTIPGKQDRDDATNEYMEQVEADL 327

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
              F  E +S    +I + +  +   +VR  +L +  R+DGR    +RD+  +V L+ R 
Sbjct: 328 HEKFEDEDASK---QIRAAYNAVMKAIVRKKILTEGFRIDGRGVTDIRDLGVEVDLIPRA 384

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGSSLF RG+TQ + V TL   + EQ +DSL+      +M HYNF P +TGE  R+G+P 
Sbjct: 385 HGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVTGKRYMHHYNFPPYSTGETGRVGSPK 444

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP+
Sbjct: 445 RREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPL 504

Query: 456 SKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGLV    DG + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G
Sbjct: 505 KAPVAGIAMGLVSGEVDGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLDG 564

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL+QA+  R  IL+ M++V+ E   ++    P++  + IP ++I  +IG  G
Sbjct: 565 IPSKVLAQALEQARDARATILDTMAEVI-EGPDEMSGLAPKITSVKIPVNKIGELIGPKG 623

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K I  I E+TGA+V+I++DGTV I++++    +AA E + SI +  +P+V + + G VVK
Sbjct: 624 KTINSITEETGAEVSIEEDGTVYISAATGEAADAAIEKVNSIANPQLPKVGERFLGTVVK 683

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            + FGAFV     RDGL+HIS+L   ER+ K  DVV  GD + V++ D D+RGKI L
Sbjct: 684 TVAFGAFVSLTPGRDGLIHISKLGGDERIEKVEDVVNVGDKIQVEIADIDNRGKISL 740


>gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
 gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
          Length = 717

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 283/720 (39%), Positives = 426/720 (59%), Gaps = 76/720 (10%)

Query: 22  RIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           ++A+Q+ G+VL   G++VVLATV   D+ ++  +DF PLTV Y E+ YAVG+IPGGY++R
Sbjct: 18  KVAKQAAGSVLMRVGKSVVLATVAREDKQVE--EDFLPLTVQYIEKAYAVGRIPGGYIKR 75

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           E++P +NE L +R+IDRS+RPLF K Y   TQ+++ V+  D E    V+S+ AAS AL L
Sbjct: 76  ETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASVALYL 135

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA------- 192
           SG+P + PV G ++  IN ++VLNP   +  + +LDL+V+G +D +LM+E+ A       
Sbjct: 136 SGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGVKDELLMIEMRALPSESEG 195

Query: 193 ----------------------NQLSEDVVLDA-------IIFGHNECKPVIEAISKLAK 223
                                 N+LSED +L A       I+ G N  +   EA  K  K
Sbjct: 196 EAMVETSFAEALAGTSIYEQVMNELSEDEILQALSVAKKAILNGSNAYE---EAFFKHRK 252

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
               E          +L + + Q   ++++ +     K  R  +++ + K+++    +  
Sbjct: 253 KEELELKEELEN--RELFDYIKQNFTKEVQFAINQMAKSERASELEKIAKELMK-LENII 309

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
             +N+ ++ +    ++ +++RT +L ++ R DGR    VR I  +  +L   HGS LF R
Sbjct: 310 DKYNQEDVFNALSKVKKELIRTQILKERKRADGRALNEVRAIEIETNILPNAHGSCLFTR 369

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPSRREI 399
           G TQA+VV TLG   D Q VD LS  ++N     FM++YNF   + GE S + AP RRE+
Sbjct: 370 GQTQALVVATLGGENDAQMVDLLS--EKNPISERFMVNYNFPGFSVGEASPIKAPGRREL 427

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG L +RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGV   K V
Sbjct: 428 GHGNLVKRALYPSVDEN--YPYVVRLVSEILESNGSSSMATVCGGSLALRAAGVSSIKLV 485

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           AG+AMGLV +GD++ IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGI ENI+  
Sbjct: 486 AGVAMGLVLEGDEYAILTDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGIDENILKN 545

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL+ M +  S+  +   E  P++E+ ++ P +I ++IG  GK I+ I+E
Sbjct: 546 ALYQAREARLHILDLMEEANSQIIIN-EEVLPKLELFSVEPSKIVDIIGQAGKTIKEIIE 604

Query: 580 QTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEV-----------NKIYKGQV 627
           + G  +++D + G VKIA +   +I+AA++ I SIT   +             + ++ +V
Sbjct: 605 KFGVSIDLDREKGEVKIAGNQSEQIKAAKDYIISITSKGKKFSKNLTQFKIGEEFFEAEV 664

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            KV  FGAFV      DGL+H S++ T+        + E D V VK+ +  + GKI + +
Sbjct: 665 KKVAPFGAFVGLKDGVDGLLHSSKMKTK--------LSENDKVDVKISEIKN-GKISVDL 715


>gi|303273102|ref|XP_003055912.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461996|gb|EEH59288.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 823

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 288/728 (39%), Positives = 421/728 (57%), Gaps = 57/728 (7%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           +ETG+I +Q++GAV+ + GET +  T+   R +     F PLTVNY ER  A G+  GGY
Sbjct: 36  VETGKIGKQANGAVIVSEGETQMYVTICAGRDVVADGGFVPLTVNYMERFSAAGRTSGGY 95

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            +R+    E+E LI R++DR +RP+  K +  ETQ++  V+ +D   S   +++ AASAA
Sbjct: 96  RKRDGGVREHETLIGRLVDRPLRPMIPKAWAYETQILQWVLSYDGNRSTDALAITAASAA 155

Query: 138 LMLSGLPFEGPVVGAQVDYINGQY--VLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
             +S +P   PV G +V ++ G    ++NP  ++ + S LDL ++GT+DAV+M+E   + 
Sbjct: 156 AAVSDVPLSKPVCGVRVGFLPGDATPIVNPTTEQMENSRLDLLLAGTEDAVMMIEGYGDF 215

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMSQMIKED 251
           LS D ++ AI  GH     V   +SK A    K      ++ + D   + E +   + ++
Sbjct: 216 LSVDEMITAIAAGHAAIASVCRELSKWAAEVGKAKATERLLTAPD--GIYESVKAAVGDE 273

Query: 252 LRVSCFIPEKYVRCKQIDDLKKK---MVSYFSSE-------------------------- 282
           L V+  I +K +R   ++ L+ K   MVS    E                          
Sbjct: 274 LAVAMAIGKKQIRGAAVERLRSKAIEMVSGLDKENAAYKASARAAQLPSAHMHALLKPRA 333

Query: 283 -----------HSSWNEGEIVSV-FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
                      H   +  E V +  E I+++ +R ++  +  R DGRD  TVR IS + G
Sbjct: 334 LRTHARPTLGSHPGTSGPEDVRLACEKIESEALRDMIRSRGTRQDGRDVYTVRPISCEGG 393

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
            L RTHGSSLF RG+TQAI   TLG++ D Q  D ++      F +HY F P + GE  R
Sbjct: 394 FLHRTHGSSLFTRGETQAIAAATLGSQSDAQRFDGIAEMDDRRFYLHYFFPPSSVGECGR 453

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +GA SRRE+GHG LA RA+ PVLP   +FP+T+R+ S ITES+GSSSMATVC   LAL D
Sbjct: 454 VGAASRREVGHGNLAERALAPVLPSKDEFPFTVRLESTITESNGSSSMATVCAGCLALQD 513

Query: 451 AGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVPI + VAGIAMGLV      G+D I+L+DI G ED LG MDFKVAG   G++A QMD
Sbjct: 514 AGVPIRRKVAGIAMGLVLGDETKGEDAIVLTDILGSEDALGDMDFKVAGDGEGMSAFQMD 573

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL--QLGEFTPRVEIMAIPPDQIR 564
           +K+ GIS  +M  AL++A+ G +HIL EM K     R   ++ ++ PR+E++ +    I 
Sbjct: 574 IKVEGISLPVMRTALERAREGLIHILGEMDKADPSPRKGGEMSKYAPRIEVVEVNTKYIG 633

Query: 565 NVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            +IG GG+ I+ I E+T    ++I++DG   +  S   ++  A E+I  +T  PE+ KIY
Sbjct: 634 KIIGKGGEQIKSICEETRIDTIDINNDGVCVLTGSYGCDMARALEIIAELTIEPEIGKIY 693

Query: 624 KG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +  +V KV++FGAFV      +GL H+S+L   RVA   DVV +GD + VKLL+ ++RG+
Sbjct: 694 RNSRVTKVLEFGAFVEILPGVEGLCHVSELDVTRVANVKDVVNDGDFIDVKLLETNERGQ 753

Query: 683 IKLSMKVV 690
            KLS + V
Sbjct: 754 YKLSRREV 761


>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
 gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
          Length = 961

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/700 (39%), Positives = 407/700 (58%), Gaps = 24/700 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E   R +  ETG+IAR ++G+V+    ET VL+TV   +     +DF PLTV+YQE+ 
Sbjct: 59  EFEIGSRLITFETGKIARFANGSVVLGMEETKVLSTVTSSKG-DSVRDFLPLTVDYQEKQ 117

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           +A G IP  YLRRE  P E E+L  R+IDR IRPLF   + +E QV+ +V+  D    P 
Sbjct: 118 FAQGVIPSTYLRREGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGRRDPD 177

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V++  A SAALMLS +P+ GP+   ++  I GQ+V+NP +DE     L+L  + T+D  L
Sbjct: 178 VMAANATSAALMLSDIPWGGPIGVIRIGRICGQFVVNPTMDELSLSDLNLVYACTKDKTL 237

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS------KL 240
           M++++A  ++E  +   +   H E    +E   +LA    K       KD+       + 
Sbjct: 238 MIDVQAGGIAEKDLEAGLRLAHPEAVKYLEPQIRLAAKAGKH-----KKDYKLSLVSDRT 292

Query: 241 EEEMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            E++  + +  +      P   K+ R + +D++ ++       E  + +   +  V + +
Sbjct: 293 LEKVRNLTEAKIEAVFTDPSYGKFERGEALDNIAQEAKRTLEEECDTESLTVLSKVVDRV 352

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  ++ +  R+DGR  + VR +  + G L   HGSSLF RGDTQ +  VTLG   
Sbjct: 353 RKGVVRNRIIAEGFRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPR 412

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +DSL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP    
Sbjct: 413 DAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDD 472

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------- 471
           FPYT+RI SE+  SDGS+SMATVCG S+A+MDAG+P+ + VAG+++GLV + D       
Sbjct: 473 FPYTVRINSEVMASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 532

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+ I++DI G EDHLG MDFK+AGT  G+TA+Q+D+K  GI  +I+   L+ A +GRL I
Sbjct: 533 DYRIVTDILGLEDHLGDMDFKIAGTRKGVTAVQLDIKPAGIPLDIICECLEPALKGRLQI 592

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L  M + +S  R Q    +PR+  +    D +R +IG  G + R I E TGA++++ D+ 
Sbjct: 593 LARMDQEISAPRTQDHRNSPRLATLKFSNDALRRLIGPLGVLKRKIEEDTGARMSVSDE- 651

Query: 592 TVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           T+ I + +   +E  +E I  I     EV  IYKG V  + ++GAFV F G + GL+H+S
Sbjct: 652 TLTILAKNQTVLERVQEKIDFIIGREIEVGGIYKGIVSSIKEYGAFVEFNGGQQGLLHVS 711

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +LS E V+K SDV+  G  + +  +  D RG IKLS+K  
Sbjct: 712 ELSHEPVSKISDVISVGQQLSLMCIGQDVRGNIKLSLKAT 751


>gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 718

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/693 (39%), Positives = 410/693 (59%), Gaps = 83/693 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ G VL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQATG-VLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 75

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 76  TKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 135

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 136 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 195

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 196 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 255

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K +++ ++QM K +            R  +++ + K++++  
Sbjct: 256 KNEIEHPEILAFIENNFQKQIKKAINQMAKSE------------RASELNKIAKEILNLE 303

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  I++    ++ K++R  +L++  R DGR    VR IS +  +L   HGS 
Sbjct: 304 IAK--DWSEESILNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSC 361

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 362 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 419

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 420 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 477

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  GITA+QMD+K+GGI + 
Sbjct: 478 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGIDQE 537

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 538 TLKQALYQAKEGRIHILNIMEEATKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIK 596

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   E+
Sbjct: 597 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISDFEL 656

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            + ++G V K+  FGAFV      DGL+H S++
Sbjct: 657 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKI 689


>gi|312139341|ref|YP_004006677.1| polyribonucleotide nucleotidyltransferase pnp [Rhodococcus equi
           103S]
 gi|311888680|emb|CBH47992.1| polyribonucleotide nucleotidyltransferase Pnp [Rhodococcus equi
           103S]
          Length = 752

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 285/716 (39%), Positives = 427/716 (59%), Gaps = 50/716 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    ET++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  YGTRTVRFETGRLAQQAAGAVVAYLDDETMLLSATSASKQPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDLFVSG-- 180
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +    D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRV 204

Query: 181 --TQD-AVLMVELEANQLSEDVV----------LDAIIF-GHNECKPVIEAI-------- 218
             + D A++MVE EA   +E+V+           +AI+  G    KP I ++        
Sbjct: 205 VESGDVAIMMVEAEA---TENVISLIDGGAQAPTEAIVAEGLEAAKPFIASLCGAQQALA 261

Query: 219 SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            K AK   + P+    +D  ++ +E+  +  + E L ++     K  R  + D++K +++
Sbjct: 262 EKAAKPTGEYPLFPAYQDDVYAAVEKAAAAPLSEALSIAG----KQERDDKTDEVKAEVL 317

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
              + +     E EI + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R H
Sbjct: 318 EQVAPQFEG-REKEIGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAVIPRAH 376

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P R
Sbjct: 377 GSALFERGETQIMGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKR 436

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+ 
Sbjct: 437 REIGHGALAERALVPVLPSQEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLK 496

Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI
Sbjct: 497 APVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTKNFVTALQLDTKLDGI 556

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
              ++  AL QA   R  IL  M++ + ++  ++  + PR+  + +P D+I  VIG  GK
Sbjct: 557 PSQVLAGALSQAHDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGK 615

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630
           +I  I E+TGA ++I+DDGTV + ++     +AA + I +I +  +P+V + + G VVK 
Sbjct: 616 MINSITEETGANISIEDDGTVYVGAADGPSAQAAIDKINAIANPQLPKVGERFLGTVVKT 675

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             FGAFV     RDGLVHIS+L   +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 676 TAFGAFVSLLPGRDGLVHISKLGNGKRIAKVEDVVNVGSKLRVEIADIDNRGKISL 731


>gi|325672779|ref|ZP_08152475.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
           33707]
 gi|325556656|gb|EGD26322.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
           33707]
          Length = 752

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 285/716 (39%), Positives = 427/716 (59%), Gaps = 50/716 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    ET++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  YGTRTVRFETGRLAQQAAGAVVAYLDDETMLLSATSASKQPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDLFVSG-- 180
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +    D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRV 204

Query: 181 --TQD-AVLMVELEANQLSEDVV----------LDAIIF-GHNECKPVIEAI-------- 218
             + D A++MVE EA   +E+V+           +AI+  G    KP I ++        
Sbjct: 205 VESGDVAIMMVEAEA---TENVISLIDGGAQAPTEAIVAEGLEAAKPFIASLCGAQQALA 261

Query: 219 SKLAKMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            K AK   + P+    +D  ++ +E+  +  + E L ++     K  R  + D++K +++
Sbjct: 262 EKAAKPAGEYPLFPAYQDDVYAAVEKAAAAPLSEALSIAG----KQERDDKTDEVKAEVL 317

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
              + +     E EI + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R H
Sbjct: 318 EQVAPQFEG-REKEIGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAVIPRAH 376

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P R
Sbjct: 377 GSALFERGETQIMGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKR 436

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+ 
Sbjct: 437 REIGHGALAERALVPVLPSQEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLK 496

Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI
Sbjct: 497 APVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTKNFVTALQLDTKLDGI 556

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
              ++  AL QA   R  IL  M++ + ++  ++  + PR+  + +P D+I  VIG  GK
Sbjct: 557 PSQVLAGALSQAHDARTTILEVMAEAI-DAPDEMSPYAPRITTIKVPVDKIGEVIGPKGK 615

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630
           +I  I E+TGA ++I+DDGTV + ++     +AA + I +I +  +P+V + + G VVK 
Sbjct: 616 MINSITEETGANISIEDDGTVYVGAADGPSAQAAIDKINAIANPQLPKVGERFLGTVVKT 675

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             FGAFV     RDGLVHIS+L   +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 676 TAFGAFVSLLPGRDGLVHISKLGNGKRIAKVEDVVNVGSKLRVEIADIDNRGKISL 731


>gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 719

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/692 (39%), Positives = 410/692 (59%), Gaps = 82/692 (11%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+ YA GKIPGGY++RE
Sbjct: 18  KVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +    V+S+ AAS AL LS
Sbjct: 77  TKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA-------- 192
            +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +LM+E+ A        
Sbjct: 137 DIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENE 196

Query: 193 -------------------NQLSEDVVLDAIIFGH----NECKPVIEAISKLAKMCA--- 226
                              N+LSED +L+A+        N      EA SK  K      
Sbjct: 197 IFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIEL 256

Query: 227 ------KEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  E +     +F K ++E ++QM K +            R  +++ + K++ +  
Sbjct: 257 KNEIEYPEILAFIENNFQKQIKEAINQMAKSE------------RASELNKIAKEISNLE 304

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  +++    ++ K++R  +L++  R DGR    VR I+ +  +L   HGS 
Sbjct: 305 IAK--DWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPINIETNILPNAHGSC 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND----FMMHYNFLPCATGEVSRMGAPS 395
           LF RG TQA+VV TLG   D Q +D L  T++N     FM++YNF   + GE S + AP 
Sbjct: 363 LFTRGQTQALVVATLGGENDAQMIDLL--TEKNPISERFMVNYNFPGFSVGEASPIKAPG 420

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RRE+GHG LA+RA++P + +   +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP 
Sbjct: 421 RRELGHGNLAKRALYPSVDEN--YPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPS 478

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI + 
Sbjct: 479 LKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQE 538

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL QAK GR+HILN M +  ++  +   E  P++E+ ++ P +I ++IG  GK I+
Sbjct: 539 TLKQALYQAKEGRIHILNIMEEA-AKKIIVNEEVLPKLELFSVDPSKIVDIIGQAGKTIK 597

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-------------DVP--EV 619
            I+E+ G  +++D + G VKIA S   +I+AA++ I +IT             D+   ++
Sbjct: 598 EIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFKL 657

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + ++G V K+  FGAFV      DGL+H S+
Sbjct: 658 GQEFQGIVKKIAPFGAFVELKNGVDGLLHSSK 689


>gi|111023614|ref|YP_706586.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus jostii
           RHA1]
 gi|123339641|sp|Q0S208|PNP_RHOSR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110823144|gb|ABG98428.1| polyribonucleotide nucleotidyltransferase [Rhodococcus jostii RHA1]
          Length = 757

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 291/715 (40%), Positives = 420/715 (58%), Gaps = 44/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    ET++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDL-----F 177
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +    D+      
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLENAVFDMVVAGRI 204

Query: 178 VSGTQD----AVLMVELEA--NQLS-----EDVVLDAIIF-GHNECKPVIEAI------- 218
           VSG+ D    A++MVE EA  N +S          +AI+  G    KP I  +       
Sbjct: 205 VSGSGDDADVAIMMVEAEATDNVISLIDGGAQAPTEAIVAEGLEAAKPFIARLCTAQQQL 264

Query: 219 -SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
            +K +K     P+    +D   +   +     E L  +  I  K  R  + D++K +++ 
Sbjct: 265 AAKASKPTGDFPVFPAYQD--DVFAAVEAAAAEKLSAALTIAGKQERDDKTDEVKVEVLE 322

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
             +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HG
Sbjct: 323 QVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAIVPRAHG 381

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RR
Sbjct: 382 SALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPKRR 441

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  
Sbjct: 442 EIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPLKA 501

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 502 PVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIP 561

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  AL QAK  R  IL  M++ + ++  ++  F PRV  + +P D+I  VIG  GK+
Sbjct: 562 SKVLAGALSQAKDARATILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGPKGKM 620

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVM 631
           I  I EQTGA ++I+DDGTV + ++     +AA +MI +I +  +P+V + + G VVK  
Sbjct: 621 INSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVKTT 680

Query: 632 DFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISL 735


>gi|293192221|ref|ZP_06609390.1| polyribonucleotide nucleotidyltransferase [Actinomyces
           odontolyticus F0309]
 gi|292820337|gb|EFF79330.1| polyribonucleotide nucleotidyltransferase [Actinomyces
           odontolyticus F0309]
          Length = 781

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 285/725 (39%), Positives = 427/725 (58%), Gaps = 46/725 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+
Sbjct: 79  AGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AAS +  ++GLPF GP+ G ++  I+ Q+V  PR  E ++   ++ V+G        
Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDG 198

Query: 181 TQD-AVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           ++D A++MVE              A   +EDVV D +       K + EA  K+A+  +K
Sbjct: 199 SEDVAIMMVEAGGGKNQWELIQAGATAPTEDVVADGLEAAKPFIKVLCEAQLKVAEKASK 258

Query: 228 E----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
           E    P+ +D  D  ++ +E+  ++ + + L        K  R + +D +K++M+   + 
Sbjct: 259 ETVEFPLFLDYTDEEYAAVEDYAAEKVAQALLTEG----KLARDEAVDAVKEEMLEALA- 313

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           E    +E  + + F  ++   +R   L +++RMDGR    +R +SA+V +L R HGS+LF
Sbjct: 314 ERFPESEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALF 373

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + + TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREIGH
Sbjct: 374 QRGETQILGITTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEVGRVGSPKRREIGH 433

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PVLP   +FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PVAG
Sbjct: 434 GDLAERALVPVLPSREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAG 493

Query: 462 IAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGL+    DG    + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++
Sbjct: 494 IAMGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVL 553

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA+  RL IL+ +++ + +   ++    PR+  + +P D+I  VIG  GK+I  I
Sbjct: 554 RAALAQARDARLAILDLINQAI-DGPDEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQI 612

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGA 635
            ++TGA V I+DDGTV IASS  A  +AAR M+  I +  +PEV + + G VVK   FGA
Sbjct: 613 QDETGADVTIEDDGTVYIASSDGASADAARTMVNQIANPQMPEVGERFVGTVVKTTSFGA 672

Query: 636 FVHFCGARDGLVHISQ----LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FV     +DGL+HISQ    +  +R+    DV++ G  V V++ +  DRGK+ L   V+D
Sbjct: 673 FVSLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGDRGKLSLH-AVID 731

Query: 692 QNTGK 696
              G+
Sbjct: 732 GEAGE 736


>gi|226366103|ref|YP_002783886.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus opacus B4]
 gi|257096705|sp|C1B324|PNP_RHOOB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226244593|dbj|BAH54941.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus opacus B4]
          Length = 757

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 292/719 (40%), Positives = 419/719 (58%), Gaps = 52/719 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    ET++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDL-----F 177
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +    D+      
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLENAVFDMVVAGRI 204

Query: 178 VSGTQD----AVLMVELEA--NQLS----------EDVVLDAIIFGHNECKPVIEAIS-- 219
           VSG+ D    A++MVE EA  N +S          E +V +    G    KP I  +   
Sbjct: 205 VSGSGDDADVAIMMVEAEATDNVISLIDGGAQAPTETIVAE----GLEAAKPFIARLCTA 260

Query: 220 ------KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273
                 K AK     P+    +D   +   +     E L  +  I  K  R  + D++K 
Sbjct: 261 QQQLAVKAAKPTGDFPVFPAYQD--DVFAAVEAAAAEKLSAALTIAGKQERDDKTDEVKV 318

Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
           +++   +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ 
Sbjct: 319 EVLEQVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAIVP 377

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393
           R HGS+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+
Sbjct: 378 RAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGS 437

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
           P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGV
Sbjct: 438 PKRREIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGV 497

Query: 454 PISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           P+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+
Sbjct: 498 PLKAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKL 557

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI   ++  AL QAK  R  IL  M++ + ++  ++  F PRV  + +P D+I  VIG 
Sbjct: 558 DGIPSKVLAGALSQAKDARATILEVMAEAI-DTPDEMSPFAPRVTAIKVPVDKIGEVIGP 616

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQV 627
            GK+I  I EQTGA ++I+DDGTV + ++     +AA +MI +I +  +P+V + + G V
Sbjct: 617 KGKMINSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTV 676

Query: 628 VKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           VK   FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 677 VKTTAFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISL 735


>gi|154148101|ref|YP_001405843.1| polynucleotide phosphorylase/polyadenylase [Campylobacter hominis
           ATCC BAA-381]
 gi|187610248|sp|A7I002|PNP_CAMHC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|153804110|gb|ABS51117.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           hominis ATCC BAA-381]
          Length = 711

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 276/713 (38%), Positives = 411/713 (57%), Gaps = 60/713 (8%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            E  ++A+Q+ GA L     TVVLATV  + +  + +DF PLTV Y E+ YA G+IPGGY
Sbjct: 14  FEINKVAKQAAGACLMKVKNTVVLATVARENTQVE-EDFLPLTVQYIEKQYAAGRIPGGY 72

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           ++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E    VV + AAS A
Sbjct: 73  IKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVFVLSADPEIDLQVVGLNAASVA 132

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192
           L LS +P + PV G +V YIN  +V+NP   E Q S LDL+V+G +D +LM+E+ +    
Sbjct: 133 LYLSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKDEMLMIEMRSLPNM 192

Query: 193 -------NQLSEDVVLDAIIF-------GHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
                  N+ SED +++AI F       G    +    A+ K       +P V D    +
Sbjct: 193 NGENQNMNEFSEDKMVEAIDFASKAILAGSTAYENTFSALKKPDAALEYKPEVEDENIAN 252

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +E+  +     D++ +     K  R  ++D +  K++   ++  + W +  + ++    
Sbjct: 253 FIEQNFTS----DVQAAINQMAKSERATELDKIVNKIMQSETAIQNEWQKNVVSNIIGKF 308

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K++R+ +++++ R DGR  + +R IS +  +L   HGS LF RG TQA+VV TLG   
Sbjct: 309 KRKIIRSQIINERRRADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGET 368

Query: 359 DEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           D Q  DSL+        FM  YNF     GE S + +P RRE+GHG LA+RA+ P +P  
Sbjct: 369 DAQVSDSLTSNTPISERFMFQYNFPGFCVGEASPLKSPGRRELGHGNLAKRALTPSVPLN 428

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
              P  +R VSEI ES+GSSSMA+VCG SL+L  AGV   K VAG+AMGL+ + D   IL
Sbjct: 429 N--PQVIRTVSEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLIFEDDKHAIL 486

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+K+GGIS  I+  AL QAK GR +ILN M 
Sbjct: 487 TDIMGLEDHDGDMDFKVAGTREGITALQMDIKLGGISLEILREALNQAKDGRNYILNLM- 545

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKI 595
           +V ++  +   E  P++EI  + P+++ ++IG GGK I+ ++++    ++++ D G VKI
Sbjct: 546 EVANDDIIINEEILPKIEIFGVDPNKMVDIIGQGGKTIKELIDKYEVSIDLERDSGEVKI 605

Query: 596 ASSSLAEIEAAREMIRSI---------------------TDVPEVNKIYKGQVVKVMDFG 634
             ++   +E A+  I +I                     T   +V + + G V K+MDFG
Sbjct: 606 QGANKINVENAKSDILNIVKKSNDFKKGSKFGHHHERKETSNFQVGEEFDGVVKKIMDFG 665

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           AF+      DGL+H+S++ T+        + EGDT+ VK+ +   RGKI L +
Sbjct: 666 AFISLKDGIDGLLHVSKIKTQ--------LSEGDTLRVKVEEI-KRGKISLEL 709


>gi|325067095|ref|ZP_08125768.1| polynucleotide phosphorylase/polyadenylase [Actinomyces oris K20]
          Length = 770

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/723 (38%), Positives = 418/723 (57%), Gaps = 48/723 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  E Q  +  + V+G    + D 
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227
           A++MVE  A + + +++        +A++  G    KP I+A+ +         +K  A+
Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 228 EPIVIDSKD--FSKLEEEMSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            P+ +D  D  +  +E+          I  + + +  +    VR    D++  ++   F 
Sbjct: 260 FPLYLDYTDEQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVR----DEVLAELAESFP 315

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
           +E  +     + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++
Sbjct: 316 TEEDTKA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIG
Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 433 HGNLAERALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492

Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL   V DG+  +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   +
Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ +++ + ++  ++    PRV  + IP D+I  VIG  GK+I  
Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DAPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E TGA + ++DDGTV I +S     EAAR+ + +I +  +PE+ + + G VVK   FG
Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671

Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AFV     +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L   + 
Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731

Query: 691 DQN 693
           D+ 
Sbjct: 732 DEQ 734


>gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
 gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
          Length = 705

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 275/689 (39%), Positives = 407/689 (59%), Gaps = 15/689 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG++A+ + GAV+   GET VL TVV D  L  G+DF PL V Y+E++YA GKIP 
Sbjct: 15  LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            ++RRE  P E E+L  R+IDRSIRPLF K Y  ETQ++ NV+  D E  P +++  AAS
Sbjct: 75  TFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLCSDGEQDPDILAANAAS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
           AAL LS +P+ GP+   ++  ++G++V+NP +D   GS L+L  S T +  LM+E +A +
Sbjct: 135 AALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSCTAERSLMIETQARE 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQMIKEDL 252
           ++      A+   H+E   +IE   +LA      K P+ +   D   L E++  + +E +
Sbjct: 195 ITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDVPVL-EKIRGLSEEHI 253

Query: 253 RVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           +     P   K+ R K +    + +      E+           F+ ++ ++VR  +  K
Sbjct: 254 KAVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDTVKKQIVRENVFQK 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R+DGR    VRD+  + G+    HGSSLF RG+TQ +  VTLG  ED Q +DS+ G  
Sbjct: 314 NIRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPP 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL-PQTAQFPYTLRIVSEI 429
           +  FM+HY+F P +  EV ++G  +RRE+GHG LA +A+  +L P+   FPY++R+ SE+
Sbjct: 374 KKRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPEDENFPYSVRVNSEV 433

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGD 482
             SDGSSSMATVCG SLALMDAG+P+   VAGI++GL+ + D       ++ IL+DI G 
Sbjct: 434 MASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLMTNVDAETGEIKNYKILTDILGL 493

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFK+AGT  G+TA+Q+D+K+ G+  +I+  AL+ A   R  IL+ M K +S+ 
Sbjct: 494 EDHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEKEISKP 553

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R    + TPR   + I  + I  +IG  G  IR +   +GA++ + +DG V I S S   
Sbjct: 554 RDTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGEDGNVHIISRSEKS 613

Query: 603 IEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            + A+ MI ++      V + Y G V  + DFGAF+ F G + GL+HIS++S E V   +
Sbjct: 614 FKVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLHISEISHEPVTAIA 673

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+  G  + V     D RG +K S K V
Sbjct: 674 DVLSVGQQITVLCTGRDFRGNLKFSRKAV 702


>gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus
           525.92]
 gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           curvus 525.92]
          Length = 735

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 277/703 (39%), Positives = 406/703 (57%), Gaps = 73/703 (10%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            +  ++A+Q+ GAV+     TVVLATV  D  ++  +DF PLTV Y E+ YA G+IPGGY
Sbjct: 14  FDLNKVAKQAAGAVMLRVKNTVVLATVARD-DVQVEEDFLPLTVQYIEKAYAAGRIPGGY 72

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           ++RE++P + E L +R+IDRS+RPLF K Y   TQ+++ V+  D E    VV + AAS A
Sbjct: 73  VKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVVGLNAASVA 132

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192
           L LS +P   PV G +V YI+ ++V+NP   E + S LDL+V+GT+D +LM+E+ +    
Sbjct: 133 LYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKDELLMIEMRSIAQQ 192

Query: 193 ----------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
                                       N+ SED +++AI F          A  +  K 
Sbjct: 193 SSQIIPIIAIDPMMDPSLNDSITQKQDMNEFSEDRIVEAIDFAGKAILRASNAYEEAFKE 252

Query: 225 CAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
             KE  +++ K   ++E E     + +  K D++ +     K  R  ++  + K++ S  
Sbjct: 253 HKKEDAILELK--PEIENENIAIYIDKFYKNDVKNAINQMAKSERASELGKIAKQIASDE 310

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W EG I +V    + K+VR  ++++ VR DGR  + VR IS +  +L   HGS 
Sbjct: 311 VAQKEGWEEGVISNVLGKYKKKIVREQIINEGVRADGRALDEVRPISIETNVLPNAHGSC 370

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRR 397
           LF RG TQA+VV TLGT  D Q  D L+        FM +YNF   + GE S + AP RR
Sbjct: 371 LFTRGQTQALVVATLGTDGDAQMYDILTEKTALIEKFMFNYNFPGFSVGEASPLKAPGRR 430

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E+GHG LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG +LAL  AGV   K
Sbjct: 431 ELGHGNLAKRALAPSIDINS--PYTIRLVSEILESNGSSSMASVCGGALALRAAGVDTQK 488

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            VAG+AMGL+ +GD   +L+DI G EDH G MDFKVAG+  GITA+QMD+K+GGIS  ++
Sbjct: 489 LVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSSDGITALQMDIKLGGISLEVL 548

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
             AL QAKRGR HILN M +  ++S++++ E   P++E+ ++ P +I ++IG  GK I+ 
Sbjct: 549 KEALYQAKRGREHILNLMHQ--ADSKIEVNEDVLPKLELFSVDPSKIVDIIGQAGKTIKE 606

Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------- 615
           I+E+    +++D + G VKIA  +   ++AA++ I SIT                     
Sbjct: 607 IIERFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRGFGKKPHGHDRRDKD 666

Query: 616 --VPEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
              P  N    + G V  V+DFGAF+      DGL+HIS++ T
Sbjct: 667 RQKPTFNIGDEFDGVVKSVVDFGAFIELKDGVDGLLHISKIKT 709


>gi|320533267|ref|ZP_08033971.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134517|gb|EFW26761.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 785

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 281/723 (38%), Positives = 418/723 (57%), Gaps = 48/723 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  E Q  +  + V+G    + D 
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227
           A++MVE  A + + +++        +A++  G    KP I+A+ +         +K  A+
Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 228 EPIVIDSKD--FSKLEEEMSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            P+ +D  D  +  +E+          I  + + +  +    VR    D++  ++   F 
Sbjct: 260 FPLYLDYSDEQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVR----DEVLAELAESFP 315

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
           +E  +     + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++
Sbjct: 316 TEEDTKA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIG
Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RAI PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 433 HGNLAERAIVPVLPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492

Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL   V DG+  +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   +
Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ +++ + ++  ++    PRV  + IP D+I  VIG  GK+I  
Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DTPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E TGA + ++DDGTV I +S     +AAR+ + +I +  +PE+ + + G VVK   FG
Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSADAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671

Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AFV     +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L   + 
Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731

Query: 691 DQN 693
           D+ 
Sbjct: 732 DEQ 734


>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
 gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
          Length = 808

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 273/725 (37%), Positives = 413/725 (56%), Gaps = 55/725 (7%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V I    R + LETG I RQ+ GAV  + GET++  TV       +  DF PL V+Y 
Sbjct: 68  HSVRIPVGDRQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYH 127

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER  A G+  GG+ +RE +P ++E+ ISR++DR +RP+  K Y +E QV+  V+ +D   
Sbjct: 128 ERYSAAGRTSGGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSYDGSH 187

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P  +++ AA AAL LS +P   PV G +V YING+YVLNP   E  + SLD+ ++GT D
Sbjct: 188 LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVTKSSLDMIMAGTSD 247

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEE 242
            +LM+E   N LSED ++ A+  G    K + + + +   K   K+ I+      S LEE
Sbjct: 248 GLLMIEGYCNLLSEDELVKAVETGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEE 307

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-------------WNEG 289
            + +++ +DL ++  I  K  R   I  L+KK+ S  + E  +             W+E 
Sbjct: 308 RIKEIVGDDLYLALHIRGKQPRAAVITALEKKVWSKLTEEGVALSKTREQLEYAHVWDED 367

Query: 290 EIVS-----------------------------VFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           EI                                F++  +K +++++  +KVR DGR   
Sbjct: 368 EIKDGEIDQGDVHITPTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGIS 427

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-GTQRNDFMMHYN 379
            VR IS    LL R HGS++F RG+TQA+V V LG     Q +D ++   +   F + Y 
Sbjct: 428 DVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYV 487

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F     GEV R+G  SRREIGHGRL  R++ P+ P  ++FPYT+R+ S ITES+GSSSMA
Sbjct: 488 FPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFP--SKFPYTVRVESTITESNGSSSMA 545

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKV 493
           +VCG+ LAL DAGVP+  P+AG+AMGL+ D  ++      +IL+DI G ED  G MD KV
Sbjct: 546 SVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKV 605

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AG+  GITA QMD+K+ GI+ +I+  AL +AK  R HIL EM+        +L +    +
Sbjct: 606 AGSKEGITAFQMDLKVQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLI 665

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRS 612
           + + +  +++  V+G GGK +R I++ +G + V++  DG+++I      +++ A E IRS
Sbjct: 666 DFVKVGREKVNMVVGTGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRS 725

Query: 613 ITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           IT  P V  +Y+   VK +  FG F+     R+GL HIS+L+T R+++  + V  G+ + 
Sbjct: 726 ITTDPTVGTVYRNCPVKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLD 785

Query: 672 VKLLD 676
           VK+++
Sbjct: 786 VKVIE 790


>gi|326771722|ref|ZP_08231007.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
           C505]
 gi|326637855|gb|EGE38756.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
           C505]
          Length = 785

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 281/723 (38%), Positives = 418/723 (57%), Gaps = 48/723 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG----TQD- 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  E Q  +  + V+G    + D 
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQLSEDVV-------LDAIIF-GHNECKPVIEAISKL--------AKMCAK 227
           A++MVE  A + + +++        +A++  G    KP I+A+ +         +K  A+
Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 228 EPIVIDSKD--FSKLEEEMSQM-----IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
            P+ +D  D  +  +E+          I  + + +  +    VR    D++  ++   F 
Sbjct: 260 FPLYLDYTDEQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVR----DEVLAELAESFP 315

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
           +E  +     + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++
Sbjct: 316 TEEDTRA---LKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAI 372

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIG
Sbjct: 373 FERGETQILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIG 432

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 433 HGNLAERALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 492

Query: 461 GIAMGL---VKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL   V DG+  +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   +
Sbjct: 493 GIAMGLMHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEV 552

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ +++ + ++  ++    PRV  + IP D+I  VIG  GK+I  
Sbjct: 553 LAGALGQARDARLFILDVLAQAI-DAPDEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQ 611

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E TGA + ++DDGTV I +S     EAAR+ + +I +  +PE+ + + G VVK   FG
Sbjct: 612 IQEDTGADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFG 671

Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AFV     +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L   + 
Sbjct: 672 AFVSLTPGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSLHAVLT 731

Query: 691 DQN 693
           D+ 
Sbjct: 732 DEQ 734


>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
 gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
          Length = 806

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 275/725 (37%), Positives = 411/725 (56%), Gaps = 55/725 (7%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V I    R + LETG I RQ+ GAV  + GET++  TV       +  DF PL V+Y 
Sbjct: 68  HCVRIPVGDRQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYH 127

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER  A G+  GG+ +RE +P ++E+ ISR++DR +RP+  K Y +E QV+  V+  D   
Sbjct: 128 ERYSAAGRTSGGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSFDGLH 187

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P  +++ AA AAL LS +P   PV G +V YING+YVLNP   E  + SLD+ V+GT D
Sbjct: 188 LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVTKSSLDMIVAGTSD 247

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEPIVIDSKDFSKLEE 242
            +LM+E   N LSED ++ A+  G    K + + + +   K   K+ I+      S LEE
Sbjct: 248 GLLMIEGYCNLLSEDELVKAVETGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEE 307

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-------------WNEG 289
            + +++ +DL ++  I  K  R   I  L+KK+ S  + E  +             W+E 
Sbjct: 308 RIKEIMGDDLYLALHISGKQPRAAVITALEKKVWSKLTEEGVALSKTREQLEYAHVWDED 367

Query: 290 EIVS-----------------------------VFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           EI                                F++  +K +++++  +KVR DGR   
Sbjct: 368 EIKDGEIDQGDVHITPTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGIS 427

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-GTQRNDFMMHYN 379
            VR IS    LL R HGS++F RG+TQA+V V LG     Q +D ++   +   F + Y 
Sbjct: 428 DVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYV 487

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F     GEV R+G  SRREIGHGRL  R++ P+ P  ++FPYT+R+ S ITES+GSSSMA
Sbjct: 488 FPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFP--SKFPYTVRVESTITESNGSSSMA 545

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKV 493
           +VCG+ LAL DAGVP+  P+AG+AMGL+ D  ++      +IL+DI G ED  G MD KV
Sbjct: 546 SVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKV 605

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AG+  GITA QMD+K+ GI+ +I+  AL +AK  R HIL EM+        +L +    +
Sbjct: 606 AGSKDGITAFQMDLKVQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLI 665

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRS 612
           + + I  +++  V+G GGK +R I++ +G + V++  DG+++I      +++ A E IRS
Sbjct: 666 DFVKIGREKVNMVVGTGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRS 725

Query: 613 ITDVPEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           IT  P V  +Y+   VK +  FG F+     R+GL HIS+L+T R+++  + V  G+ + 
Sbjct: 726 ITTDPTVGTVYRNCPVKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLD 785

Query: 672 VKLLD 676
           VK+++
Sbjct: 786 VKVIE 790


>gi|223940512|ref|ZP_03632361.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
 gi|223890836|gb|EEF57348.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
          Length = 664

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/603 (40%), Positives = 378/603 (62%), Gaps = 16/603 (2%)

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF K + NE QV   V+  D E+ P ++S++ ASA+LM+S +P+ GP+   ++  +NG+
Sbjct: 1   PLFPKGWYNEVQVQTVVLSADGENDPDILSIIGASASLMVSDIPWAGPLGALRIARVNGK 60

Query: 161 YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++  P   E  +  LDL   G ++ ++M E    ++SE+    A+ FG + CKP+I A  
Sbjct: 61  FIAIPTHAEMAESDLDLIYVGNENDIVMFEGAGEEISEEDFKAALKFGQDCCKPLIAAQK 120

Query: 220 KLAKMCAKEPIVIDSKDF-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID----DLKKK 274
           +LA    K+   +       ++ +E   +  + +  +   P K  R   ++    ++ KK
Sbjct: 121 ELAAKAGKKKREVKLNIVPEEILKEAKALAGDRIVPALLTPSKLAREAAVNAIFEEVGKK 180

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           +V  F +E  +    +  S +  IQ + VR +++ +  RMDGR  + +R I ++ G+L R
Sbjct: 181 LVEKFGAEKVTEFVLKDASYY--IQKEAVRGLIMKEGKRMDGRPLDGIRAIHSEAGILPR 238

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGA 393
            HGS+LF RG+TQ + + TLGT ED Q  DS +G +    F++HYNF   + GE  R+  
Sbjct: 239 AHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHYNFPNYSVGETGRISG 298

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
           P RREIGHG LA R+I P++P   ++PY +R+ SEI ES+GS+SMA+VCG +LALMDAGV
Sbjct: 299 PGRREIGHGALAERSIEPMIPLD-KYPYAIRVTSEIMESNGSTSMASVCGGTLALMDAGV 357

Query: 454 PISKPVAGIAMGLVKDGDD------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           P+ +PVAGI++G+  + D       + +LSDI G ED  G MD K+AGT+ GIT  Q+D+
Sbjct: 358 PMIRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGFGDMDCKIAGTEKGITGFQLDL 417

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI  ++M   L++A+  RL IL EM+K L+  R ++ ++ PR+E + I P++I  +I
Sbjct: 418 KLRGIPHDMMAETLEKARVARLFILGEMAKTLAAPRTEMSKYAPRIETVRINPEKIGALI 477

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G GGK I+ +VE++G ++NI+DDGTV I S S   ++ AR+ I  +T   E+ KIY+G+V
Sbjct: 478 GPGGKNIKRLVEESGCEINIEDDGTVNIYSVSSEGMKIARDAIVGMTAEAEIGKIYRGKV 537

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           V V +FGAFV F   +DGLVHIS+L+  RV +T D+VK GD +WVK L  D++G++KLS 
Sbjct: 538 VTVKEFGAFVEFLPGKDGLVHISELANFRVKQTEDIVKIGDEIWVKCLGVDEKGRVKLSR 597

Query: 688 KVV 690
           +  
Sbjct: 598 RAA 600


>gi|161833811|ref|YP_001598007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri GWSS]
 gi|187611304|sp|A8Z660|PNP_SULMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152206301|gb|ABS30611.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri GWSS]
          Length = 728

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/712 (36%), Positives = 426/712 (59%), Gaps = 43/712 (6%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L +ETG +AR+++G+ +   G T +LATVV  +  K+   F PLT++Y+E+  A GK
Sbjct: 15  GRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSAGGK 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGGY++RE RP + EIL  R++DR +RPLF   Y NE Q++I+++ +D+   P  ++ +
Sbjct: 75  IPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDINVLPDGLAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF----------VSGTQ 182
            AS A+ +S + F+GPV   ++  IN  +++NP ++E + S D +          V GT 
Sbjct: 135 VASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKS-DFYLDLDLDLDLIVGGTN 193

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPIVIDSKDFS 238
           + +++VE E  ++SE  +++AI+  H   +  IEA    I+K  K   K+   I+  ++ 
Sbjct: 194 NYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFIKKKLYKIELYNYY 253

Query: 239 KLEEEMSQ---MIKEDLRV-----------SCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
                 +     IKE ++            SC   +K  R  +I ++ KK+  +F +E  
Sbjct: 254 YKYINFNLNVFYIKEKIKFISYEEIDYIYKSCLFKQK--RSNKIYNILKKIKFHFYNESI 311

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             N  EI  +F++I+ ++++ ++  + +R+DGR  + +R+I +QV  L   HGS++F RG
Sbjct: 312 VINNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRG 371

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQA+  VTLG+  D   +D+     +  F +HYNF P +TGE+  +   SRREIGHG L
Sbjct: 372 ETQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHGNL 431

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+  ++P T    YT+R+VS++ ES+GSSSMATVC S+LALMD+G+ + +PV+GI+M
Sbjct: 432 AQRALKNIIPTT----YTIRVVSDVLESNGSSSMATVCASTLALMDSGIIVKRPVSGISM 487

Query: 465 GLVKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           GL+ +    + IILSD+ GDED++G MDFK+ GT+ G+TA QMD+KI GI+ +++   + 
Sbjct: 488 GLIMNYLTGEAIILSDLLGDEDYIGDMDFKITGTEYGMTACQMDIKISGITYDVLSYTIF 547

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +AK+G L I+ +M   LS  R  L     ++    IP   I  VIG GGK I+ I   T 
Sbjct: 548 KAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGGKRIQEIQVSTE 607

Query: 583 AKVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
             + I +    G ++I   +  +++ A   I++IT VP+V  IYK +V  +  FG FV  
Sbjct: 608 TNIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVKNIKKFGVFVKI 667

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
               +GL+HI ++S   + K    +++GD + VK L  +++  KIKLS K++
Sbjct: 668 SKYLEGLLHIYEISW--LTKVESFIRKGDIISVKYLGKNNKFRKIKLSHKMI 717


>gi|284030886|ref|YP_003380817.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kribbella flavida DSM 17836]
 gi|283810179|gb|ADB32018.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kribbella flavida DSM 17836]
          Length = 750

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 283/708 (39%), Positives = 411/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+  A   G+T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 24  FGTRTIRFETGRLAQQAAGSAAAYLDGDTMVLSATTASKKPKDQFDFFPLTVDVEERMYA 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E  IL  R+IDR +RP F    +NE QV+I V+  + +    V+
Sbjct: 84  AGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVSGLRNEIQVVITVLALNPDKLYDVL 143

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG----TQD- 183
           ++ AAS +  ++GLPF GP+   +V  I+ Q+V  P   E +    D+ V+G    + D 
Sbjct: 144 AINAASMSTQIAGLPFSGPIGATRVALIDKQWVAFPTHSELEDAVFDMVVAGRVTDSGDV 203

Query: 184 AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE E+               +E++V + +       K ++EA S LA   +K    
Sbjct: 204 AIMMVEAESTPGTFDAVAAGKQAPTEEIVAEGLEAAKGFIKTLVEAQSALAAKASKPTGE 263

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI  D          +     E+L  +  I  K  R +  + +K  +V   +++     
Sbjct: 264 FPIFPDYA--DDAFAAVQAAATEELTQALTITGKQEREEATEAVKAAVVDKLAADFEG-R 320

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ + F  +  K+VR  +L  KVRMDGR    +R + AQV +L R HGS+LF RG+TQ
Sbjct: 321 EKELSAAFRSLTKKLVRQRVLRDKVRMDGRGLADIRPLKAQVKVLPRVHGSALFERGETQ 380

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 381 ILGVTTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 440

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP    FPY LR VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAMGL+
Sbjct: 441 ALVPVLPSREDFPYALRQVSEALGSNGSTSMGSVCASTLSLLSAGVPLKAPVAGIAMGLI 500

Query: 468 K---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               DG  +++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 501 SGEVDGKTEYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPASVLAGALTQ 560

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK  RL IL+ M+K + ++  ++ EF PRV  + +P D+I  VIG  GK+I  I E TGA
Sbjct: 561 AKEARLTILDVMAKAI-DAPGEMSEFAPRVISVKVPVDKIGEVIGPKGKMINQITEDTGA 619

Query: 584 KVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I ++    AE   A     +   +PE  + Y G VVK  +FGAF+    
Sbjct: 620 DISIEDDGTVYIGATDGPSAEAARAAINAIANPTMPEKGERYLGTVVKTTNFGAFISLLP 679

Query: 642 ARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HIS+L      +RV    D++  G  + V++ + DDRGK+ L
Sbjct: 680 GKDGLLHISKLRGLAGGKRVEAVEDILSVGQKLQVEIAEIDDRGKLSL 727


>gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 726

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 288/723 (39%), Positives = 419/723 (57%), Gaps = 59/723 (8%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           + V++E   R  +   G +A+Q++G+     G+TV+LATVV D +     DF PLTV Y 
Sbjct: 3   YDVKLELENRVEEYSFGDVAKQANGSAWIKSGKTVILATVVIDETEIVKDDFLPLTVQYI 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+TYA GKIPGG+ +RE++P++ E L SR++DRS+RPLF K + + TQ+ I V   D ES
Sbjct: 63  EKTYAAGKIPGGFFKRETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSADSES 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++ AASAAL  S +     V   +   ++G+ +LNP L +    SLDL++SGT+D
Sbjct: 123 DMQVLALNAASAALFTSDIDVNSSVCAVRAAKVDGELILNPTLTQLKNSSLDLYLSGTKD 182

Query: 184 AVLMVEL--------EANQLSE------------DVVLDAIIFGHNECKPVIEAISKLAK 223
            +LM+E+        E     E             +V+D  +        +IE + K  K
Sbjct: 183 DLLMIEMRSIGSEKVEVEDTYEPMLDPMMDPSLGTIVVDTHVSNAMPEDELIEVLDKTEK 242

Query: 224 M---------CAKEPIVIDSK----DFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCK 266
           +          A  P   D K        L EEM   +KE    D+  +     K  R  
Sbjct: 243 LLFASNVEYEVAFGPYQKDIKPLDLKLDSLNEEMVAFVKERHMKDIADAMNQMAKSERST 302

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
            + +L+K++++     +  W+E E+ +  E ++ + VR+ +L++KVR DGR    +R I+
Sbjct: 303 ALRNLRKRILT----NNIEWDELELKAAIEAVKKEQVRSQILNEKVRADGRKLTEIRPIT 358

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCA 384
               +L   H S LF RG TQA+VV+T+G  +D Q  + L+  GTQ  +FM+HYNF   +
Sbjct: 359 IDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGTQNENFMVHYNFPGFS 418

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
            GE S +    RRE+GHG LA+RA+ P++    Q   T+R+VSEI ES+GSSSMATVCG 
Sbjct: 419 VGEASPVMGTKRRELGHGNLAKRALEPIIDLDGQ---TVRLVSEILESNGSSSMATVCGG 475

Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            +AL  A +  S  VAGIAMG+V DG+ + ILSDI G EDH G MDFKV G+  GITAMQ
Sbjct: 476 YMALRAADIETSDTVAGIAMGMVSDGERYAILSDIMGLEDHDGDMDFKVTGSKEGITAMQ 535

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQI 563
           MD+K+GGIS NI+  AL QAK GR HI++ M  + +ES+++  +   P  E   I P  I
Sbjct: 536 MDIKLGGISLNILKEALYQAKEGRAHIIDIM--LDAESKIEFNDGVLPSTEFFHIDPGFI 593

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
             +IG  GK IR ++E+    ++ID  +G VKI   +   ++ A+E I+ I + P+  KI
Sbjct: 594 GEIIGQAGKTIREMIEKFEVAIDIDKKEGKVKITGKNKEGVQGAKEHIQKIVNAPKKEKI 653

Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKL 674
                  Y+G V K++DFGAFV      DGL+HIS+LS + RV    DV+KEG+ V V++
Sbjct: 654 KYEVGEKYEGTVKKIVDFGAFVELPDGTDGLLHISKLSKDKRVENVHDVLKEGEKVTVEI 713

Query: 675 LDF 677
           L+F
Sbjct: 714 LEF 716


>gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
 gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
          Length = 735

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 287/738 (38%), Positives = 422/738 (57%), Gaps = 94/738 (12%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+ GA L     TVVLATV  + + +  +DF PLTV Y E+TYA G+IPGGY++RE
Sbjct: 18  KVAKQASGAALLRVKNTVVLATVAREDT-QVSEDFLPLTVQYIEKTYAAGRIPGGYVKRE 76

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E    VV++ AAS AL LS
Sbjct: 77  TKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVALYLS 136

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE--ANQLSE- 197
            +P   PV G +V YI+ ++V+NP   E + S LDL+V+G +D +LM+E+   A Q  E 
Sbjct: 137 DIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDELLMIEMRSIATQKDEM 196

Query: 198 -----DVVLDAIIFGH-------NECKP--VIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
                D ++D  + G        NE     ++EAI++  K   +          +  EE 
Sbjct: 197 MPIALDPMMDPNLGGEVIATQDMNEFSEDLIVEAIAEAGKAILRAS--------NAYEEA 248

Query: 244 MSQMIKEDLR-----------VSCFIPEKYV--------------RCKQIDDLKKKMVSY 278
            SQ  KED +           ++ ++ E Y               R  +++ + K++++ 
Sbjct: 249 FSQHKKEDAQLELKPEIENESIAVYLDEFYKNEVKAAINQMAKSERAGELNKIAKQILTD 308

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
             ++   W E  + +V    + K+VR  ++++ VR DGR  + VR IS +  +L   HGS
Sbjct: 309 EVAQKEGWEEEVVSNVLAKFKKKIVREQIINEGVRADGRGLKDVRPISIETNILPNAHGS 368

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
            LF RG TQA+VV TLGT  D Q  D L+  G   + FM +YNF   + GE S + AP R
Sbjct: 369 CLFTRGQTQALVVATLGTDGDAQMYDMLTEKGAVTDKFMFNYNFPGFSVGEASPLKAPGR 428

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           RE+GHG LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG SLAL  AGV   
Sbjct: 429 RELGHGNLAKRALAPSIDSDS--PYTIRLVSEILESNGSSSMASVCGGSLALRAAGVDTP 486

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VAG+AMGL+ +G+   +L+DI G EDH G MDFKVAG+  GITA+QMD+K+GGIS ++
Sbjct: 487 KLVAGVAMGLIFEGEKHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGISLDV 546

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA  GRLHILN M        +   E  P++E+ ++ P +I ++IG  GK I+ 
Sbjct: 547 LKEALLQACEGRLHILNLMETANKNISVN-EEILPKLELFSVDPGKIVDIIGQAGKTIKE 605

Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------- 615
           I+E+    +++D + G VKIA +  + ++AA++ I  I                      
Sbjct: 606 IIEKFDVAIDLDREKGEVKIAGAQKSSVDAAKDYIIQIVSKDGGKGFGGRRGGRDGKEGR 665

Query: 616 ---VPEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
               PE N    ++G+V  V++FGAF+   G  DGL+HIS++ T         +K GD V
Sbjct: 666 AHKTPEFNIGDEFEGEVKSVVEFGAFIGLPGGVDGLLHISKIKTP--------LKAGDRV 717

Query: 671 WVKLLDFDDRG-KIKLSM 687
            VK+   + +G KI LS+
Sbjct: 718 KVKI--SEQKGHKISLSL 733


>gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
 gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
          Length = 721

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/679 (39%), Positives = 398/679 (58%), Gaps = 25/679 (3%)

Query: 34  TYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISR 93
           T G++V+ AT   D+  +D  DF PL+V +QER  + G   G + +R+ RP E+EIL+ R
Sbjct: 2   TRGDSVLYATASRDKDKRD-IDFLPLSVEHQERFSSAGTTSGAFNKRDGRPAEHEILVCR 60

Query: 94  MIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQ 153
           +IDR +RPL ++ +++ETQ++  ++ +D   +   +++ A++AAL LS +P   PV  A 
Sbjct: 61  LIDRPLRPLIAEGWRHETQLLSWILSYDGVRTCDPLAITASAAALWLSDVPLLKPVAAAM 120

Query: 154 VDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECK 212
           V YI+GQ VLNP +++ + S L+L V+GT++AVLM+E  A+ L ED++++A+ FGH   K
Sbjct: 121 VGYIDGQLVLNPTVEQMKHSRLNLTVAGTKEAVLMIEGAADFLPEDLMVEAVTFGHEAIK 180

Query: 213 PVIEAISKLAKMCAKEPIVIDSKD-FSKLEEEMSQMI--KEDLRVSCFIPEKYVRCKQID 269
                + +L K+  K       K     L+E M ++   K D   +  + +K     Q  
Sbjct: 181 IQCAGLEELGKVAGKAKKYDSIKPPVEGLQEAMDELFTDKVDEIFNGDMAKKDQSAAQ-S 239

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            L + ++  F  ++    +  + + F+D+  + +         R+DGR    VR I ++ 
Sbjct: 240 QLNEAVMLEFEEKYPE-EKAAVKAAFKDLLCRRMFAKAKASGTRIDGRKLNEVRVIDSEA 298

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
           GL  R HGS+LF RG+TQ +   TLG     Q +D +SG +   F + Y F P   GE  
Sbjct: 299 GLFPRVHGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEKRFYLQYTFPPSCVGETG 358

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+GAP RRE+GHG LA RA+ P LP  A FPY +R+ S +TES+GSSSMA+VCG  LALM
Sbjct: 359 RVGAPGRREVGHGNLAERALVPTLPSEADFPYAIRVESLVTESNGSSSMASVCGGCLALM 418

Query: 450 DAGVPISKPVAGIAMGLV---KDG---DDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           DAGVPI  P+AGIAMG++   K G   ++ +I+SDI G ED LG MDFKVAG   GIT  
Sbjct: 419 DAGVPIKSPIAGIAMGMLLGDKGGVSDENAVIVSDILGTEDALGTMDFKVAGNKEGITTF 478

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q+D+K  G++   M  AL QAK GRLHIL EM K L E R +L    P++  + I PD I
Sbjct: 479 QLDIKCEGLTLETMKKALDQAKEGRLHILGEMEKALKEPRAELPASVPKMIKVTISPDSI 538

Query: 564 RNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNK 621
             VIG GG+ IR ++E      +++D+ G ++I    + ++E A+EMI + +   PE  K
Sbjct: 539 GKVIGPGGRQIRALIEDFKLDNIDVDESGEIQILGFDMEQMEKAKEMIPTYVGPEPEEGK 598

Query: 622 IYKGQVVKVMDFGAFVHFC-GARD-------GLVHISQLSTERVAKTSDVVK--EGDTVW 671
           IY G++  + +FG FV    GA D       GL H+S+L  ERV  T   ++    +T+ 
Sbjct: 599 IYTGKITGIHNFGVFVEILPGAEDGSTPGLEGLCHVSELHIERVRNTEGFIRAMNTETLE 658

Query: 672 VKLLDFDDRGKIKLSMKVV 690
           V     + +G+ +LS K V
Sbjct: 659 VVYQGKNKKGQHQLSRKAV 677


>gi|75349253|sp|Q53597|PNP_STRAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|642066|gb|AAB17498.1| guanosine pentaphosphate synthetase [Streptomyces antibioticus]
          Length = 740

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 407/706 (57%), Gaps = 33/706 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AASA+  L+GLPF GP  G +V  I GQ+V  P   E +    D+ V+G   +D   
Sbjct: 137 AINAASASTQLAGLPFSGPYGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKMCAKE------P 229
           A++MVE EA + +  +V D         +  G +  KP I+ + K     A +       
Sbjct: 197 AIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
             + S       E +S  ++ +L  +  I  K  R  ++D +K         E     E 
Sbjct: 257 FPVPSSTTRTTSEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-REK 315

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI + +    +      ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ +
Sbjct: 316 EISAAYRPWPSSSSAERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQIL 375

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA RAI
Sbjct: 376 GVTTLNMLRMEQQLDTLSPVTRKPYMHNYNFPPISVGETGRVGSPKRREIGHGALAERAI 435

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK- 468
            PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+  
Sbjct: 436 VPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQ 495

Query: 469 --DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
             +G+  ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+QA+
Sbjct: 496 EINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQAR 555

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             RLHIL+ M + + ++  ++    PR+  + IP D+I  VIG   ++I  I E TGA++
Sbjct: 556 DARLHILDVMMEAI-DTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEI 614

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
            I+DDGT+ I ++     EAAR  I  I +   PEV +   G VVK   FGAFV     +
Sbjct: 615 TIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGK 674

Query: 644 DGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 675 DGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|219119866|ref|XP_002180684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408157|gb|EEC48092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 830

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 278/710 (39%), Positives = 418/710 (58%), Gaps = 38/710 (5%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +ETG+I RQ+ GAV  T G++V+ AT  +D+  K+  DF PL+V+YQER  + G   
Sbjct: 89  PICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTS 148

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GGY +R+ RP E+EIL  R+IDR +RPL    +++ETQ++  V+ +D E S   ++++A+
Sbjct: 149 GGYNKRDGRPAEHEILTCRLIDRPLRPLIQSGWRHETQLLSWVLSYDGERSCDPLAIIAS 208

Query: 135 SAALMLSGLPFEGPVVGAQVDYIN-GQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEA 192
           +++L +S +P   PV   QV   + G  V+NP  L  +   L+L V+GT++AVLM+E  A
Sbjct: 209 ASSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSKLNLMVAGTEEAVLMIEGAA 268

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-----KLEEEMSQM 247
           + L E  ++ A+  GH   + + + ++ L K+  KE  +   K        +++E  S  
Sbjct: 269 DFLPESTMIQAVKTGHEAIQVLCQGLTALGKVAGKEKKLDTIKATPENLQIRVDELFSDR 328

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---FEDIQAKVVR 304
           I +D+  S     K  + K + DL   +V     ++     GE V++   F+D+  + + 
Sbjct: 329 I-DDMWSSGL--GKEAQGKIMTDLYTAVVGELIEDYP----GETVAIKGAFKDLLCRRMF 381

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
               ++ +R DGR    +R ++ + GLL R HGS+LF RG+TQ +   TLG     Q ++
Sbjct: 382 FRAREEGLRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIE 441

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L GT    F + Y F P   GE  R+GAP RRE+GHG LA RA+ P +P  A FPYT+R
Sbjct: 442 KLDGTDEKRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIR 501

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---KDG---DDFIILSD 478
           + S ITES GSSSMA+VCG SLALMDAGVPI  PVAGIAMG++   K G   ++ +ILSD
Sbjct: 502 VESLITESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVILSD 561

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAG   GI+  Q+D+K  G++   M  AL+QA+ GRLH+L+EM KV
Sbjct: 562 ILGTEDALGTMDFKVAGDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEMEKV 621

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA 596
           ++  R +L    P++   +IP + I  +IG GGK IR I+E     VN+D  ++G V+++
Sbjct: 622 IASPREELPATVPKMMSFSIPVEAIGKIIGPGGKQIRAIIEDF-ELVNMDVGEEGGVQLS 680

Query: 597 SSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFC-GARD-------GLV 647
           S   A++  A+  I ++    P   + Y G++  +  FG F+    GA D       GLV
Sbjct: 681 SFDTAKMGEAQTFITTLVRPEPVEGETYTGKITGIHPFGVFLEILPGAEDGSYPGLEGLV 740

Query: 648 HISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSMKVVDQNTG 695
           H+S+L+ ERV      +K  +   + VK L   D+GK++LS K + +  G
Sbjct: 741 HVSELAHERVRNCEGFMKSMNVEELTVKYLG-KDKGKLQLSRKALLEEQG 789


>gi|239917238|ref|YP_002956796.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Micrococcus luteus NCTC 2665]
 gi|281414287|ref|ZP_06246029.1| polynucleotide phosphorylase/polyadenylase [Micrococcus luteus NCTC
           2665]
 gi|259534137|sp|C5C9U0|PNP_MICLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239838445|gb|ACS30242.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Micrococcus luteus NCTC 2665]
          Length = 753

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 279/714 (39%), Positives = 412/714 (57%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    E T +L+     +S ++G DFFPLTV+ +ER YA
Sbjct: 18  YGKRTVRFETGRLAQQAAGAAMVYLDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV++ V     +     V
Sbjct: 78  SGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDEDQGS-LDLFVSGT-- 181
           ++ AAS +  LSGLPF GP+ G ++  ++      Q+V  P+  + +G+  ++ V+G   
Sbjct: 138 AINAASLSTQLSGLPFSGPIGGVRMALMDDGSGARQWVAFPKHSQLKGAVFNMAVAGRVV 197

Query: 182 --QDAVLMVELEANQLSEDVVLDA---------IIFGHNECKPVI----EAISKLAKMCA 226
               A++MVE EA   S  +V +          +  G    KP I    EA + L K   
Sbjct: 198 GDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALCEAQADLVKRAG 257

Query: 227 KEPIVIDS-KDFSKLEEEMSQMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHS 284
           K+P+ +   +D+        + +  D     F I +K  R         +++   + E  
Sbjct: 258 KDPVDVPVFQDYQDDAYAAVEKLATDRLTEIFSIADKQERESASYAYLLEVLEELAGEGK 317

Query: 285 SWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            + E  GEI   +  +  ++VR  +L  +VR+DGR    +R ++A+V +L R HGS++F 
Sbjct: 318 DFAERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFE 377

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG
Sbjct: 378 RGETQIMGVTTLNMLKMEQQIDSLSPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 437

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGI
Sbjct: 438 ALAERALVPVLPAREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAHVAGI 497

Query: 463 AMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    DG   +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++ 
Sbjct: 498 AMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLA 557

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL QA+  RLHIL+ ++  + ++  ++    PR+  + IP D+I  VIG  G +I  I 
Sbjct: 558 SALTQAREARLHILSVLNAAI-DAPDEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQ 616

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           + TGA + I+DDGTV I ++  A  EAAR  + +I +  VPEV + Y G VVK+  FGAF
Sbjct: 617 DDTGADITIEDDGTVLIGATDGASAEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGAF 676

Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V     +DGL+H+S+L      +RV    DV+  G  V V++   DDRGK+ LS
Sbjct: 677 VSLTPGKDGLLHVSELRKLNEGKRVDDVEDVLGVGQKVQVEITKIDDRGKLSLS 730


>gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 554

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/454 (51%), Positives = 320/454 (70%), Gaps = 5/454 (1%)

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSVFEDIQAKVVR 304
           KED  ++     K  R  ++++L+ K++S  + ++S+ +    + +IV+  +  +  +VR
Sbjct: 9   KEDFSLAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDIVTALKTFERSLVR 68

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           + ++D   R+DGR  + +RDI  +V +L + HGS+LF RG+TQA+VV  LGT +DEQ VD
Sbjct: 69  SKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVD 128

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI  VLP+ + FPYT+R
Sbjct: 129 DLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIR 188

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+ D FIILSDI GDED
Sbjct: 189 VVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSDILGDED 248

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  G+TA+QMDMKI GI  +I+  AL QAK GR+HIL++M+ V+ ESR 
Sbjct: 249 HLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHILSKMNAVIQESRN 308

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++    PR+E + I  D+IRNVIG GGK IR I E+TGAK+ I  DGTV I + +   +E
Sbjct: 309 RIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTVMIYAVNNEAVE 368

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+ MI  I   PE+ K+++G VV++M FGAFV F G + GLVHIS++  E ++    V+
Sbjct: 369 YAKSMIMDIVTEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIRNEHISSVGSVI 428

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              D V V ++   DR  I+LSM+ VDQ +G+PI
Sbjct: 429 SLNDKVKVLVIGI-DREHIQLSMRRVDQESGEPI 461



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 25/182 (13%)

Query: 26  QSDGAVLATYGETVVLATV---------VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGG 76
           ++ G+ L T G T  L            + D    D ++ F L  N+    YAVG+    
Sbjct: 98  KAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRENFLLHYNFP--PYAVGE--SA 153

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES--SPHVVSMVAA 134
            LR    P   EI   ++  R+IR +  +  K++    I V+    ES  S  + ++  A
Sbjct: 154 ALRA---PGRREIGHGKLAWRAIRYVLPE--KSDFPYTIRVVSEITESDGSSSMATVCGA 208

Query: 135 SAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL--DEDQ-GSLDLFVSGTQDAVLMVE 189
           S ALM +G+P + PV G  +  I  + ++++   +  DED  G +D  V+GT + V  ++
Sbjct: 209 SLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSDILGDEDHLGDMDFKVAGTAEGVTALQ 268

Query: 190 LE 191
           ++
Sbjct: 269 MD 270


>gi|269956017|ref|YP_003325806.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304698|gb|ACZ30248.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Xylanimonas cellulosilytica DSM
           15894]
          Length = 744

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 270/707 (38%), Positives = 413/707 (58%), Gaps = 36/707 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V A   GET++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLARQAAGSVAAYLDGETMLLSATTAGKHPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R+IDR +RPLF K  +NE QV++ V+    + +  V+
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLAIHPDDAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184
           ++ AAS +  +SGLPF GPV G ++  I+GQ+V  P+  D+++   ++ V+G       A
Sbjct: 138 AINAASLSTQISGLPFSGPVAGVRIALIDGQWVAFPKYSDKERAVFEMVVAGRVAGDDVA 197

Query: 185 VLMVELEANQLSEDVVLDAI--------IFGHNECKPVIEAISKLA--------KMCAKE 228
           + M+E EA   +  ++ + +          G    KP + A+ +          K   + 
Sbjct: 198 IAMIEAEATDDAWKLIQEGVQAPTEAVVAEGIEAAKPFLRALCEAQSALAAQAAKDVQEF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+  D +      E +          +  I +K  R  ++D++K ++++   ++     E
Sbjct: 258 PLFPDYQ--PDAFEAVEAAASARAAEALAIADKQTREGRLDEIKAELLAELGAQFEG-RE 314

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +Q K++R  +L +++R+DGR    +R + A+V +L R HGS++F RG+TQ 
Sbjct: 315 KEVSAAFRSVQKKLMRHRVLTEQIRIDGRGPRDIRTLGAEVEVLPRVHGSAIFERGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +DSL    R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 375 MGVTTLNMLRMEQQIDSLGPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+  PVAGIAMGL+ 
Sbjct: 435 LVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAPVAGIAMGLIS 494

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL QA
Sbjct: 495 DEVDGETRYVALTDILGAEDALGDMDFKVAGTRDFVTAIQLDTKLDGIPASVLAGALTQA 554

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R+ IL+ +++ +     ++    PRV  + +P D+I  VIG  GK+I  I E+TGA 
Sbjct: 555 HEARVTILDVLNEAIDVPD-EMSPNAPRVISVKVPVDKIGEVIGPKGKMINQIQEETGAD 613

Query: 585 VNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGTV I ++    AE   A     +   VPEV + + G VVK   FGAF+     
Sbjct: 614 ISIEDDGTVYIGATDGPSAEAARAAINAIANPHVPEVGERFVGTVVKTTSFGAFISLSPG 673

Query: 643 RDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 KDGLLHISQIRKLVGGKRVENVDDVLSVGQKVQVEIGEIDPRGKLSL 720


>gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus
           13826]
 gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           concisus 13826]
          Length = 732

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 273/700 (39%), Positives = 402/700 (57%), Gaps = 70/700 (10%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            +  ++A+Q+ GAVL     TVVLATV  +  ++  +DF PLTV Y E+ YA GKIPGGY
Sbjct: 14  FDLNKVAKQASGAVLLRVKNTVVLATVARE-DVQVEEDFLPLTVQYIEKAYAAGKIPGGY 72

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           ++RE++P + E L +R+IDRS+RPLF K Y   TQ+++ V+  D E    VVS+ AAS A
Sbjct: 73  VKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVVSLNAASVA 132

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA---- 192
           L LS +P   PV G +V YI+ ++V+NP   E  Q ++DL+V+GT+D +LM+E+ +    
Sbjct: 133 LYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKQSAIDLYVAGTKDELLMIEMRSLPQQ 192

Query: 193 ----------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
                                       N+ SED +++AI F          A  +  K 
Sbjct: 193 TTQLIPMVAIEPMIDPSLSDSMAQKQVMNEFSEDKMVEAIDFAGKAILRASSAYEEAFKE 252

Query: 225 CAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
             KE   ++ K   ++E E     + +  K +++ +     K  R  ++  + K++ S  
Sbjct: 253 HKKEDAALELK--PEIENENIAIYIDKFYKAEVKNAINQMAKSERASELGKIAKQISSDE 310

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W+E  I +V    + K+VR  ++++ +R DGR  E VR IS +  +L   HGS 
Sbjct: 311 VAQKEGWDEAVITNVLGKYKKKIVREQIINEGIRADGRGLEEVRPISIETNVLPNAHGSC 370

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           LF RG TQA+VV TLGT  D Q  D L+        FM +YNF   + GE S + AP RR
Sbjct: 371 LFTRGQTQALVVATLGTDSDAQMYDILTEKAPLVEKFMFNYNFPGFSVGEASPLKAPGRR 430

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E+GHG LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG SLAL  AGV   K
Sbjct: 431 ELGHGNLAKRALAPSIDLAS--PYTIRVVSEILESNGSSSMASVCGGSLALRAAGVNTQK 488

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            VAG+AMGL+ +G+   +L+DI G EDH G MDFKVAGT  GITA+QMD+K+GGIS  ++
Sbjct: 489 LVAGVAMGLIFEGEKHAVLTDIMGLEDHDGDMDFKVAGTSDGITALQMDIKLGGISLEVL 548

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
             AL QAKRGR HIL  M++  ++  +++ E   P++E+  + P +I ++IG  GK I+ 
Sbjct: 549 KEALYQAKRGREHILALMTQ--ADKNIEINEDVLPKLELFNVDPSKIVDIIGQAGKTIKE 606

Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------V 616
           I+E+    +++D + G VKIA  +   ++AA++ I SIT                     
Sbjct: 607 IIEKFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRSFGKKPFKHDKDRVK 666

Query: 617 PEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           P  N    + G V  V+DFG F+      DGL+HIS++ +
Sbjct: 667 PTFNIGDEFTGSVKSVVDFGVFIELKDGVDGLLHISKIKS 706


>gi|75763848|ref|ZP_00743497.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488666|gb|EAO52233.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 525

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/506 (45%), Positives = 340/506 (67%), Gaps = 2/506 (0%)

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + 
Sbjct: 1   MVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVR 60

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVR 304
           +M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I  + VR
Sbjct: 61  EMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 120

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA  + TLG   D Q +D
Sbjct: 121 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQAXSICTLGALGDVQILD 180

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R
Sbjct: 181 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 240

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G ED
Sbjct: 241 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMED 300

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R 
Sbjct: 301 HLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRT 360

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + P++ IM I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    +
Sbjct: 361 ELSAYAPKIIIMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMND 420

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVV
Sbjct: 421 KAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVV 480

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD + VK+++ D +G++ LS KV+
Sbjct: 481 KIGDVITVKVIEIDKQGRVNLSRKVL 506



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 16/203 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RPL  E G ++R + G+ L T G+T   +      +L D Q    L V   +R       
Sbjct: 139 RPLASEVGILSR-THGSGLFTRGQTQAXSICTLG-ALGDVQILDGLGVEESKRFMHHYNF 196

Query: 74  PG---GYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHV 128
           P    G  R    P   EI    + +R++ P+    K +    +++  V++ +  +S   
Sbjct: 197 PSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGSTSQ-- 254

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY--VLN--PRLDEDQGSLDLFVSGTQD 183
            S+  ++ A+M +G+P + PV G  +  + +G++  +L+    +++  G +D  V+GT  
Sbjct: 255 ASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDHLGDMDFKVAGTAQ 314

Query: 184 AV--LMVELEANQLSEDVVLDAI 204
            V  L ++++ + LS +++ +A+
Sbjct: 315 GVTALQMDIKIDGLSREILEEAL 337


>gi|145295879|ref|YP_001138700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum R]
 gi|187610291|sp|A4QEY2|PNP_CORGB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|140845799|dbj|BAF54798.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 753

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 290/728 (39%), Positives = 428/728 (58%), Gaps = 58/728 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DGAV  TY   +T++LAT       ++G DFFPLTV+ +ER 
Sbjct: 25  DFGTRTIRFETGQLARQADGAV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 83

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE Q+++ VM  + E    
Sbjct: 84  YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYYD 143

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG 180
           VV++  ASAA  +SGLP  G V G ++  +       GQ+V  P     +Q   ++ V+G
Sbjct: 144 VVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVAG 203

Query: 181 ------------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVI- 215
                       +  AV+MVE  A++             +E +V D    G    KP I 
Sbjct: 204 RLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSD----GLEAAKPFID 259

Query: 216 ------EAISKLAKMCAKE-PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                 E +++     AKE P+     D  +S +E ++S+ +   L +            
Sbjct: 260 ILCRAQEGLAQRVGNAAKEFPLFPPYTDEVYSAVERKVSKKLASLLTLKAKQERDDATNA 319

Query: 267 QIDDLKKKMVSYFSSEHSSWNEG--EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
            +++++ +++  F + +SS  E   EI + +  +   +VR ++L    R+DGR    +RD
Sbjct: 320 YMEEIEAELLPKFEASYSSAAEASKEIRAAYNAVMKSIVRRMILTDHFRIDGRGVTDIRD 379

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ +V L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+      +M HYNF P +
Sbjct: 380 LAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDAKRYMHHYNFPPYS 439

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
           TGE  R+G+P RREIGHG LA RA+ PV+P   +FPY++R VSE   S+GS+SM +VC S
Sbjct: 440 TGETGRVGSPKRREIGHGALAERAVLPVIPSREEFPYSIRQVSEALGSNGSTSMGSVCAS 499

Query: 445 SLALMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           +L+L +AGVP+  PVAGIAMGLV    DG  +++ L+DI G ED  G MDFKVAGT   I
Sbjct: 500 TLSLYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILGAEDAFGDMDFKVAGTADFI 559

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+Q+D K+ GI   ++  AL+QA+  RL ILN M+ V++    ++ +F PR+  + IP 
Sbjct: 560 TALQLDTKLDGIPSKVLSDALEQARDARLTILNTMADVINGPD-EMSKFAPRITTVKIPV 618

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618
            +I  +IG  GK I  + E+TGA ++I+DDGTV I+++  A  EAA E I ++ +  +P+
Sbjct: 619 AKIGELIGPKGKNINALTEETGANISIEDDGTVFISAADGASAEAAIEKINALANPQLPK 678

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677
           V + + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVVK G+ + V++ D 
Sbjct: 679 VGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEKVDDVVKVGEKIQVEIADI 738

Query: 678 DDRGKIKL 685
           D+RGKI L
Sbjct: 739 DNRGKISL 746


>gi|315637153|ref|ZP_07892375.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           JV22]
 gi|315478520|gb|EFU69231.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           JV22]
          Length = 725

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 278/726 (38%), Positives = 426/726 (58%), Gaps = 56/726 (7%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  G+    E  ++A+QS+GAVLA  G  VVLATVV +      +DF PLTV Y E+T
Sbjct: 6   EFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKT 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA  K+PGG+++RE +P++ E L SR+IDRS+RPLF K Y   T + + V+  D      
Sbjct: 66  YAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQ 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            +S+ AA+AAL  S LP +  V G +V  I    V+NP  ++ +  +LDL+V+G++D +L
Sbjct: 126 TLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSKDELL 185

Query: 187 MVELEA--------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           M+E++                     N++ ED +++AI F  N  K       K  +  +
Sbjct: 186 MIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKAFEEVS 245

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           KE + ++   F+ +EE +   +++    D++ +     K  R  Q+ D+ K M+S   +E
Sbjct: 246 KEKVEVELVKFT-IEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDVAK-MIS--KNE 301

Query: 283 HSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +   NE E  +++E +   + ++VR ++++++VR DGR  + VR IS +  +L  TH S 
Sbjct: 302 YCISNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSSC 361

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           LF RG+TQA+V+ T+   +D Q  + L+   T   +FM+HYNF   + GE   M    RR
Sbjct: 362 LFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGRR 421

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E+GHG LA++A+   + +   +  T+R+VSEI ES+GSSSMATVCG SLAL  AG+PIS 
Sbjct: 422 ELGHGNLAKKALEATIDK--DYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISD 479

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            VAG+AMG+V + D + IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGI  +++
Sbjct: 480 LVAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVL 539

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK GR HIL+ M    +E  +      P +E  AI P +I  VIG  G  I+ I
Sbjct: 540 KEALLQAKEGRTHILSLMKD--AEKDIVPSNALPLIEQFAIDPSKIMVVIGKAGATIKEI 597

Query: 578 VEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-DVP---------EVNKIYK-- 624
           +E+    +++D ++GTVK++  +   I  A E I++I+ + P         +  K+Y   
Sbjct: 598 IEKFTVSIDLDKENGTVKVSGGNKQNIIDACEHIKTISNNAPSKKDASKNIDFEKLYSED 657

Query: 625 ----GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
               G+V ++ DFGAF+      +GL+HIS++S +RV   +DV+  G  + VK+L    +
Sbjct: 658 EVVIGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKV-KK 716

Query: 681 GKIKLS 686
            +I+LS
Sbjct: 717 DRIELS 722


>gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 958

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 272/706 (38%), Positives = 418/706 (59%), Gaps = 26/706 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTVNYQER 66
           E E   + + LETG IAR ++GAV+ +  +T VL+TV   +   D  +DF PLTV+YQE+
Sbjct: 58  EFEIGSQVISLETGEIARFANGAVVLSMDQTKVLSTVTSSKG--DAVRDFLPLTVDYQEK 115

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            +A G IP  ++RRE  P E E+L  R+IDR IRPLF+  + +E QV+ +V+  D +  P
Sbjct: 116 QFAQGVIPNTFMRREGAPKERELLCGRLIDRPIRPLFAPGFYHEVQVMASVLSSDGKQDP 175

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V++  A SAALMLS +P+ GP+   ++  I GQ+++NP +DE     L+L  + T+D  
Sbjct: 176 DVMAANATSAALMLSDIPWGGPIGVIRIGRIGGQFIVNPTMDELSLSDLNLVYACTKDKT 235

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEE 243
           LM++++A ++SE  +  A+   H E    +E   +LA    K     D KD+  S + E 
Sbjct: 236 LMIDVQAREISEKDLEAALRLAHPEAVKYLEPQIRLAAKAGK-----DKKDYKLSMVSER 290

Query: 244 MSQMIKE--DLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + + ++   + ++     +    K+ R + +D++ + +      E    +   +    + 
Sbjct: 291 ILEKVRNLAETQIEAVFTDSSYGKFERGEALDNITQDVKRTLEEECDEESLNVLRKAVDT 350

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR  ++ +  R+DGR  + VR +  + G L   HGSSLF RGDTQ +  VTLG  
Sbjct: 351 VRKQVVRRRIISEGFRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAP 410

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q ++SL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP   
Sbjct: 411 GDAQRLESLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPED 470

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------ 471
            FPYT+RI SE+  SDGS+SMATVCG S+ALMDAG+P+ + VAG+++GLV + D      
Sbjct: 471 DFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDPSTGEI 530

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            D+ +L+DI G EDHLG MDFK+AGT +G+TA+Q+D+K  GI  +I+   L  A +GRL 
Sbjct: 531 KDYRVLTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICECLDHALKGRLQ 590

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+ M + ++  R Q+ +  PR+       D +R +IG  G + R I E+TGA+++I  D
Sbjct: 591 ILDHMEQEINVPRTQVDKTRPRLATFKFSNDTLRQLIGPLGVLKRKIEEETGARLSI-SD 649

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           G + + + + A ++  +E I  I     E   +YKG V  + ++GAF+ F G + GL+HI
Sbjct: 650 GMLTVGAKNQAVMDKVQEKIDFIIGCEIETGGVYKGIVTSIKEYGAFIQFNGGQQGLLHI 709

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S+LS E V+K SDVV  G  + +  +  D RG IKLS+K      G
Sbjct: 710 SELSHEPVSKVSDVVSVGQQLSLMCIGQDVRGNIKLSLKATSPPLG 755


>gi|293977923|ref|YP_003543353.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri DMIN]
 gi|292667854|gb|ADE35489.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Candidatus Sulcia muelleri DMIN]
          Length = 730

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/713 (36%), Positives = 429/713 (60%), Gaps = 43/713 (6%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L +ETG +AR+++G+ +   G T +LATVV  +  K+   F PLT++Y+E+  A GK
Sbjct: 15  GRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSAGGK 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGGY++RE RP + EIL  R++DR +RPLF   Y NE Q++I+++ +D+   P  ++ +
Sbjct: 75  IPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDINVLPDGLAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-----------DLFVSGT 181
            AS A+ +S + F+GPV   ++  IN  +++NP ++E + S            DL V GT
Sbjct: 135 VASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSYLDLDLDLDLDLDLIVGGT 194

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAKEPIVIDSKDF 237
            + +++VE E  ++SE  +++AI+  H   +  IEA    I+K  K   K+   I+  ++
Sbjct: 195 NNYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFIKKKLYKIELYNY 254

Query: 238 S-----------KLEEEMSQMIKEDLRV---SCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
                        ++E++  +  E++     SC   +K  R  +I ++ KK+  +F +E 
Sbjct: 255 YYKYINFNLNVFYIKEKIKFLSYEEIDYIYKSCLFKQK--RSNKIYNILKKIKFHFYNES 312

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
              N  EI  +F++I+ ++++ ++  + +R+DGR  + +R+I ++V  L   HGS++F R
Sbjct: 313 IVINNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNIWSKVDCLPGVHGSAIFTR 372

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQA+  VTLG+  D   +D+     +  F +HYNF P +TGE+  +   SRREIGHG 
Sbjct: 373 GETQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHGN 432

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA+RA+  ++P T+    T+R+VS++ ES+GSSSMATVC S+LALMD+G+ + +PV+GI+
Sbjct: 433 LAQRALKNIIPTTS----TIRVVSDVLESNGSSSMATVCASTLALMDSGILVKRPVSGIS 488

Query: 464 MGLVKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           MGL+ +    + IILSDI GDED++G MDFK+ GT+ G+TA QMD+KI GI+ +++   +
Sbjct: 489 MGLIMNYLTGEAIILSDILGDEDYIGDMDFKITGTEYGMTACQMDIKISGITYDVLSYTI 548

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            +AK+G L I+ +M   LS  R  L     ++    IP   I  VIG GGK I+ I   T
Sbjct: 549 FKAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGGKRIQEIQVST 608

Query: 582 GAKVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
              + I +    G ++I   +  +++ A   I++IT VP+V  IYK +V  +  FG FV 
Sbjct: 609 ETNIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVKNIKKFGVFVK 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
                +GL+HI ++S   + K    +++GD + VK L  +++  KIKLS K++
Sbjct: 669 ISKYLEGLLHIYEISW--LTKVESFLRKGDIISVKYLGKNNKFRKIKLSHKMI 719


>gi|224418070|ref|ZP_03656076.1| polynucleotide phosphorylase/polyadenylase [Helicobacter canadensis
           MIT 98-5491]
 gi|253827399|ref|ZP_04870284.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313141607|ref|ZP_07803800.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|253510805|gb|EES89464.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313130638|gb|EFR48255.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 715

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 280/717 (39%), Positives = 419/717 (58%), Gaps = 74/717 (10%)

Query: 21  GRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
            + A+Q  G+V    G  VVLAT+  D      +DF PLTV Y E+ YA GK PGGY++R
Sbjct: 18  NKFAKQCSGSVYLQSGNNVVLATIAIDTQEVVEEDFLPLTVQYIEKAYAAGKFPGGYIKR 77

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           E++P + E L +R+IDRS+RPLF K Y   TQ+ + V+  D ++   ++++ AASAAL +
Sbjct: 78  EAKPGDFETLSARIIDRSLRPLFPKDYCYPTQITLMVLSADEDADLQLLALNAASAALYV 137

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE-------- 191
           S +P   PV   ++  I G++V+NP L   ++ +LDLFVSG ++ +LM+E+         
Sbjct: 138 SEIPLSFPVSAVRIGRIEGEFVINPSLKALEESTLDLFVSGVKEDLLMIEMRSFGGVAIH 197

Query: 192 -------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
                  AN+LSE+ +++ +           +A  +  K C K P+V+++K  + +  E+
Sbjct: 198 QENTEFSANELSEEEMIEVLEIAKKAISQRSQAFEESFKDCVKTPLVLENKRKNFVSSEI 257

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS------------WNEG--- 289
            + IKE                 +++LK  + S   +E +S            W E    
Sbjct: 258 VEYIKES---------------HLEELKDIIQSLSKTERNSLLHAFARKIQKEWEEKNLK 302

Query: 290 EIVS----VFED---IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           EI S    V E    I+ +++RT++L++  R DGR+ + VR IS +   L   H S+LF 
Sbjct: 303 EIESLEKCVLESVLKIKREIIRTMILEESKRADGRELKEVRPISIETNFLPNAHSSALFT 362

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           RG TQA+VV TLG   D Q  + L+     +  FM+HYNF P + GE S + AP RRE+G
Sbjct: 363 RGQTQALVVATLGGEMDAQSYELLTDKAPLKERFMVHYNFPPFSVGEASSISAPGRRELG 422

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA+RA+   +        T+R+VSEI ES+GSSSMATVCG SLAL  AG+  +  +A
Sbjct: 423 HGNLAKRALEASVINGDL--KTIRLVSEILESNGSSSMATVCGGSLALAAAGIKCTSLIA 480

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           G+AMGLV + D + IL+DI G EDH G MDFK+AG+  GITAMQMD+K+GG+   I+  A
Sbjct: 481 GVAMGLVCENDKYAILTDIMGLEDHDGDMDFKIAGSRRGITAMQMDIKLGGLKSEILQKA 540

Query: 521 LQQAKRGRLHILNEMSK-----VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           L QAK  R HIL+ M +     VL+ES L      P  +I +I P +I +VIG  G+ I+
Sbjct: 541 LMQAKEARNHILDLMEEAKEKIVLNESVL------PSSQIFSIEPSKIIDVIGQAGRTIK 594

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE----VNKIYKGQVVKV 630
            I+E+    V+++ ++G VK++ S+  ++EAA+  I  I   P+    +  IY+G+V K+
Sbjct: 595 EIIEKFSVAVDLNRENGEVKVSGSNKEKVEAAKMHILKIIKNPQELYKIGDIYQGKVKKI 654

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           ++FGAFV      DGL+HIS+++  R  K SDV+KEGD V V++L    + K++L +
Sbjct: 655 VEFGAFVELPKGYDGLLHISKITNNREQKVSDVLKEGDNVEVEVLSL-SKNKVELKL 710


>gi|297571213|ref|YP_003696987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931560|gb|ADH92368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 809

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 277/704 (39%), Positives = 403/704 (57%), Gaps = 36/704 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           R ++ ETG +ARQ+ G  LA   GET VL+        K+  DFFPLTV+ +ER+YA G+
Sbjct: 37  RTIRFETGLLARQAAGCALAYLDGETTVLSATAVSSQPKEHFDFFPLTVDVEERSYAAGR 96

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPG + RRE RP  + IL +R+IDR +RP F K  +NE QV+  V+    + +  VV++ 
Sbjct: 97  IPGSFFRREGRPGTDAILAARLIDRPLRPAFVKGLRNEVQVVATVLTIHPDDAYDVVAIN 156

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDAVLM 187
           AAS +  LSGLPF GP+ G ++  I+GQ+V  PR  E  + +  + V+G       A++M
Sbjct: 157 AASMSTQLSGLPFSGPIGGVRISLIDGQWVAFPRWSEMPRATFTMVVAGRIVGDDVAIMM 216

Query: 188 VELEANQ------------LSEDVVLDAI----IFGHNECKPVIEAISKLAKMCAKEPIV 231
           VE E  +             +E+VV   +     F    C+   E  ++ AK   + P+ 
Sbjct: 217 VEAEGGENAVENIAKGGVKPTEEVVAQGLEAAKTFIRTLCEAQQELAAQAAKPTEEYPLF 276

Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
              +D     + +   I         I +K+ R   +++L   +V     E     +   
Sbjct: 277 PSYEDAEY--DAVGGKIGSRFEELWGITDKHERDDALNELTTDIVESLGEEFPEREQALA 334

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           ++V    + K +R  +L    RMDGR    +R I+A+  +L R HGS+LF RG+TQ + V
Sbjct: 335 LAVNAHWK-KAMRERVLTTGERMDGRTPVEIRTITAESDILPRVHGSALFQRGETQIMGV 393

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TL   + EQ +D+LS      ++ HYNF P +TGE  R+G+P RREIGHG LA RA+ P
Sbjct: 394 TTLNMLKMEQQLDNLSPVTAKRYIHHYNFPPYSTGETGRVGSPKRREIGHGMLAERALVP 453

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--- 468
           VLP   +FPY +R VSE   S+GS+SM +VC S+++LM+AGVP+   VAGIAMGLV    
Sbjct: 454 VLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTISLMNAGVPLKAVVAGIAMGLVSGEI 513

Query: 469 DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           DG+  ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI   ++  AL QA   
Sbjct: 514 DGEQRYVALTDILGAEDALGDMDFKVAGTRDFVTALQLDTKLDGIPAEVLAAALGQAHDA 573

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R  IL+ + + + E    + E  PR+  + IP D+I  VIG  GK+I  I + TGA++ I
Sbjct: 574 RQAILDLIEEAVPEPD-DMAETAPRIISVKIPVDKIGEVIGPKGKMINQIQDDTGAEITI 632

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           ++DGTV I +++ +  EAAR+ I  I +  +PEV + + G VVK   FGAF+     +DG
Sbjct: 633 EEDGTVFIGATNGSSAEAARQTINQIANPTMPEVGERFVGTVVKTTTFGAFISLAPGKDG 692

Query: 646 LVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           L+HISQ+      +RV    DV+  GD V V+L + D RGK+ L
Sbjct: 693 LLHISQIRRLVGGKRVENVEDVLNVGDKVEVELAEIDQRGKLSL 736


>gi|304390809|ref|ZP_07372761.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304325692|gb|EFL92938.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 830

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 280/723 (38%), Positives = 421/723 (58%), Gaps = 42/723 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +A+Q+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 55  KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+    + +  V
Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180
           V++ A+S A  L+GLPF GP+ GA++  I+GQ+V  P   E +Q + ++ ++G       
Sbjct: 175 VAINASSMATQLAGLPFSGPIGGARLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234

Query: 181 -TQD-AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLA-------- 222
             +D A++MVE    + + D++         D +    +  KP I+ + +          
Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K   + P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E
Sbjct: 295 KETQEYPLFPDYED--NHFEAMKSEVEADLLAAIQIADKLTRENRETEIRDAAIEKLAVE 352

Query: 283 HSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
              +   E E+ + F+ ++ K+VR  +L +  R+DGR  + +R +SA+V +L R HGS+L
Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIG
Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPATHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA  A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+A
Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532

Query: 461 GIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL+    ++G  F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  ++
Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ M   + +   +L    PR+  + IP D+I  VIG  GK+I  
Sbjct: 593 LKGALGQARDARLKILDVMHAAI-DGPDELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E TGA++ I+DDGTV I + +    EAAR+ + +I +  +PEV + + G VVK   FG
Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711

Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L   V 
Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSLHAVVD 771

Query: 691 DQN 693
           D++
Sbjct: 772 DED 774


>gi|19553179|ref|NP_601181.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390815|ref|YP_226217.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|81760356|sp|Q8NP50|PNP_CORGL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21324745|dbj|BAB99368.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Corynebacterium glutamicum ATCC 13032]
 gi|41326153|emb|CAF20316.1| PUTATIVE POLYRIBONUCLEOTIDE PHOSPHORYLASE / GUANOSINE
           PENTAPHOSPHATESYNTHETASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 753

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 292/736 (39%), Positives = 433/736 (58%), Gaps = 59/736 (8%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DGAV  TY   +T++LAT       ++G DFFPLTV+ +ER 
Sbjct: 25  DFGTRTIRFETGQLARQADGAV-TTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERM 83

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE Q+++ VM  + E    
Sbjct: 84  YAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYYD 143

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNP-RLDEDQGSLDLFVSG 180
           VV++  ASAA  +SGLP  G V G ++  +       GQ+V  P     +Q   ++ V+G
Sbjct: 144 VVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVAG 203

Query: 181 ------------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVI- 215
                       +  AV+MVE  A++             +E +V D    G    KP I 
Sbjct: 204 RLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSD----GLEAAKPFID 259

Query: 216 ------EAISKLAKMCAKE-PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                 E +++     AKE P+     D  +S +E ++S+ +   L +            
Sbjct: 260 ILCRAQEGLAQRVGNAAKEFPLFPPYTDEVYSAVERKVSKKLASLLTLKAKQERDDATNA 319

Query: 267 QIDDLKKKMVSYFSSEHSSWNEG--EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
            +++++ +++  F + +SS  E   EI + +  +   +VR ++L    R+DGR    +RD
Sbjct: 320 YMEEIEAELLPKFEASYSSAAEASKEIRAGYNAVMKAIVRRMILTDHFRIDGRGVTDIRD 379

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ +V L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+      +M HYNF P +
Sbjct: 380 LAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDAKRYMHHYNFPPYS 439

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
           TGE  R+G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S
Sbjct: 440 TGETGRVGSPKRREIGHGALAERAVLPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCAS 499

Query: 445 SLALMDAGVPISKPVAGIAMGLVK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           +L+L +AGVP+  PVAGIAMGLV    DG  +++ L+DI G ED  G MDFKVAGT   I
Sbjct: 500 TLSLYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILGAEDAFGDMDFKVAGTADFI 559

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+Q+D K+ GI   ++  AL+QA+  RL ILN M+ V++    ++ +F PR+  + IP 
Sbjct: 560 TALQLDTKLDGIPSKVLSDALEQARDARLTILNTMADVINGPD-EMSKFAPRITTVKIPV 618

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPE 618
            +I  +IG  GK I  + E+TGA ++I+DDGTV I+++  A  EAA E I ++ +  +P+
Sbjct: 619 AKIGELIGPKGKNINALTEETGANISIEDDGTVFISAADGASAEAAIEKINALANPQLPK 678

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677
           V + + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVVK G+ + V++ D 
Sbjct: 679 VGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEKVDDVVKVGEKIQVEIADI 738

Query: 678 DDRGKIKLSMKVVDQN 693
           D+RGKI L + VV+++
Sbjct: 739 DNRGKISL-VPVVEED 753


>gi|227875834|ref|ZP_03993960.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
           ATCC 35243]
 gi|227843582|gb|EEJ53765.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
           ATCC 35243]
          Length = 794

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 285/729 (39%), Positives = 427/729 (58%), Gaps = 45/729 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 17  KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM    + +  V
Sbjct: 77  AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT---QD- 183
           V++ A+S +  L+GLPF GP+ G ++  I+GQ+V  P   + +Q + ++ V+G    +D 
Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196

Query: 184 AVLMVE-------LEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKE------- 228
           A++MVE        E  Q  +    + ++ G  E  KPVI  + +     A +       
Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286
            P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E   + 
Sbjct: 257 YPLFPDYED--NHFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314

Query: 287 -NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F+ ++ K+VR  +L +  R+DGR  + +R ++A+V +L R HGS+LF RG+
Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIGHG LA
Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
             A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+AGIAMG
Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494

Query: 466 LVKD-GDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           L+ + G+D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++V A
Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTKLDGIPSDVLVGA 554

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA+  RL IL+ M   + ++  +L    PR+  + IP D+I  VIG  GK+I  I E 
Sbjct: 555 LGQARDARLKILDVMHAAI-DTPDELAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQED 613

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I + +    EAAR+ + +I +  +PEV + + G VVK   FGAF+ 
Sbjct: 614 TGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFGAFIS 673

Query: 639 FCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL-------SM 687
               +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L       ++
Sbjct: 674 LTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSLLAVVDDEAV 733

Query: 688 KVVDQNTGK 696
              D+N+G+
Sbjct: 734 TTADENSGE 742


>gi|227549063|ref|ZP_03979112.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078845|gb|EEI16808.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 776

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 274/719 (38%), Positives = 419/719 (58%), Gaps = 45/719 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V     E T++LAT    ++ +D  DFFPLTV+ +ER Y
Sbjct: 53  DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLATTTASKNPRDNIDFFPLTVDVEERMY 112

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  + +    V
Sbjct: 113 AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMNPDEYYDV 172

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDE-DQGSLDLFVSGT 181
           V++  ASAA  LSGLP  G V   ++  +       GQ+V  P  ++ D    ++ V+G 
Sbjct: 173 VAINGASAATQLSGLPVSGAVGAVRMALLTDDQHPEGQWVAFPNHEQHDHCVFEMVVAGR 232

Query: 182 ----QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI----SKLAKMC 225
                 A++MVE  A      +V D         +  G +  KP I+ +    + LA+  
Sbjct: 233 VVDGDVAIMMVEAGAGASVVKLVADGAPAPTEETVAEGLDAAKPFIKTLCETQAALAEET 292

Query: 226 AKE-------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
           AKE       P   D K +S +E+  ++ +   L +             ++++++ ++  
Sbjct: 293 AKETQEFELFPAYSD-KVYSAVEKRAAKKLATLLTIQGKKDRDDATNAYMEEIEETLLDK 351

Query: 279 FSSEHS-----SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
           F  +       +    EI + +  +   +VR  +L +  R+DGR    +RD+  +V L+ 
Sbjct: 352 FDFDDDDEDEYTQASKEIRAAYNALMKSIVREKILTEGFRIDGRGVSDIRDLEVEVELIP 411

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393
           R HGS+LF RG+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE  R+G+
Sbjct: 412 RAHGSALFERGETQILGVTTLDMLKMEQTLDSLQPETAKRYIHHYNFPPYSTGETGRVGS 471

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
           P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L +AGV
Sbjct: 472 PKRREIGHGALAERALIPVIPPREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYNAGV 531

Query: 454 PISKPVAGIAMGLVK---DG-DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           P++ PVAGIAMGLV    DG   ++ L+DI G ED  G MDFKV+GT   ITA+Q+D K+
Sbjct: 532 PLAAPVAGIAMGLVSGEVDGATKYVALTDILGAEDAFGDMDFKVSGTPDFITALQLDTKL 591

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI   ++V AL+QA+  R  IL+ M++V+ +   ++    P++  + +P  +I  VIG 
Sbjct: 592 DGIPSEVLVSALEQARDAREAILDTMAEVI-DGPDEMNPLAPKITAINVPVSKIGEVIGP 650

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQV 627
            GK+I  I E+TGA+++I+DDGT+ +++++    +AA + I  I +  +P+V + Y G V
Sbjct: 651 KGKMINSITEETGAEISIEDDGTIYVSAATGESADAAIDKINGIANPQMPKVGERYLGTV 710

Query: 628 VKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           VK + FGAFV      DGLVHIS+L  ++R+ K  DVV  G+ + V++ D D+RGKI L
Sbjct: 711 VKTVAFGAFVSILPGTDGLVHISKLGGSQRIDKVEDVVNVGEKIEVEIADIDNRGKISL 769


>gi|269977469|ref|ZP_06184441.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
           28-1]
 gi|306819115|ref|ZP_07452829.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|269934385|gb|EEZ90947.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
           28-1]
 gi|304648091|gb|EFM45402.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 794

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 285/729 (39%), Positives = 426/729 (58%), Gaps = 45/729 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 17  KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM    + +  V
Sbjct: 77  AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT---QD- 183
           V++ A+S +  L+GLPF GP+ G ++  I+GQ+V  P   + +Q + ++ V+G    +D 
Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196

Query: 184 AVLMVE-------LEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKE------- 228
           A++MVE        E  Q  +    + ++ G  E  KPVI  + +     A +       
Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286
            P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E   + 
Sbjct: 257 YPLFPDYED--NHFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314

Query: 287 -NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F+ ++ K+VR  +L +  R+DGR  + +R ++A+V +L R HGS+LF RG+
Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIGHG LA
Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
             A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+AGIAMG
Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494

Query: 466 LVKD-GDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           L+ + G+D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++V A
Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTKLDGIPSDVLVGA 554

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA+  RL IL+ M   + ++  +L    PR+  + IP D+I  VIG  GK+I  I E 
Sbjct: 555 LGQARDARLKILDVMHAAI-DTPDELAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQED 613

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I + +    EAAR+ + +I +  +PEV + + G VVK   FGAF+ 
Sbjct: 614 TGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFGAFIS 673

Query: 639 FCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL-------SM 687
               +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L       + 
Sbjct: 674 LTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSLLAVVDDEAA 733

Query: 688 KVVDQNTGK 696
              D+N+G+
Sbjct: 734 TTADENSGE 742


>gi|298345251|ref|YP_003717938.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
           ATCC 43063]
 gi|315656413|ref|ZP_07909302.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298235312|gb|ADI66444.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
           ATCC 43063]
 gi|315492972|gb|EFU82574.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 830

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 281/729 (38%), Positives = 422/729 (57%), Gaps = 43/729 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +A+Q+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 55  KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+    + +  V
Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180
           V++ A+S A  L+GLPF GP+ G ++  I+GQ+V  P   E +Q + ++ ++G       
Sbjct: 175 VAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234

Query: 181 -TQD-AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLA-------- 222
             +D A++MVE    + + D++         D +    +  KP I+ + +          
Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K   + P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E
Sbjct: 295 KETQEYPLFPDYED--NHFEAMKSEVEADLLAAIQIADKLTRENRETEIRDAAIEKLAVE 352

Query: 283 HSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
              +   E E+ + F+ ++ K+VR  +L +  R+DGR  + +R +SA+V +L R HGS+L
Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIG
Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPVTHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA  A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+A
Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532

Query: 461 GIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL+    ++G  F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  ++
Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ M   + +   +L    PR+  + IP D+I  VIG  GK+I  
Sbjct: 593 LKGALGQARDARLKILDVMHAAI-DGPDELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E TGA++ I+DDGTV I + +    EAAR+ + +I +  +PEV + + G VVK   FG
Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711

Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L   VV
Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSLHA-VV 770

Query: 691 DQNTGKPIV 699
           D   G+ + 
Sbjct: 771 DDEDGEAVT 779


>gi|257068221|ref|YP_003154476.1| polynucleotide phosphorylase/polyadenylase [Brachybacterium faecium
           DSM 4810]
 gi|256559039|gb|ACU84886.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Brachybacterium faecium DSM 4810]
          Length = 753

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 275/719 (38%), Positives = 414/719 (57%), Gaps = 47/719 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV     + T+V +        K+  DFFPLT++ +ER YA
Sbjct: 20  YGRREIRFETGRLAQQAAGAVAVYLDDDTMVFSATAVSNKPKEHFDFFPLTIDVEERMYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP  + IL +R+ DR +RP F K  +NE QV++ VM +  + +  VV
Sbjct: 80  AGRIPGSFFRREGRPGTDAILAARLTDRPLRPAFVKGLRNEVQVVLTVMANGPDDAYDVV 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI-----NGQYVLNPRLDE-DQGSLDLFVSG--T 181
            +  ASA+  +SGLPF GP+   ++  +      GQ+V  P   + D+    + V+G   
Sbjct: 140 GINGASASTQISGLPFSGPIGAVRIALMPNSQGGGQWVAFPTFSQLDEAVFSMVVAGRIV 199

Query: 182 QD--AVLMVELEANQLS-------------EDVVLDAI----IFGHNECKPVIEAISKLA 222
           +D  A++MVE EA   S             E VV + I    +F  + C    E  +  A
Sbjct: 200 EDDVAIMMVEAEATDNSWNLIKEQGAIAPTESVVAEGIEAAKVFIRSLCVAQQELAATAA 259

Query: 223 KMCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           K   + P+ +D +D  +  +E   ++ + E + ++     K  R ++ + L  ++    S
Sbjct: 260 KPVREFPLFLDYQDDAYEIVEAAATERLAEVMSIAA----KTEREERTEQLLAEITEELS 315

Query: 281 SEHSSWN--EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
            E       E E+   F  +  +VVR  +L + VR+DGR    +R +SA+V +L R HGS
Sbjct: 316 GEGKQLEDREKEVTGAFRALTKQVVRKKVLTEGVRIDGRGLRDIRALSAEVEVLPRVHGS 375

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           +LF RG+TQ + V TL   + EQ +DSL   +R  ++ HYNF P +TGE  R+G+P RRE
Sbjct: 376 ALFQRGETQIMGVSTLNMLKMEQQIDSLGPVERKRYIHHYNFPPYSTGETGRVGSPKRRE 435

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           +GHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  P
Sbjct: 436 VGHGMLAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAP 495

Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           VAGIAMGL+ D  +    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+  
Sbjct: 496 VAGIAMGLISDTIEGEIRYAALTDILGAEDAFGDMDFKVAGTGEFITAIQLDTKLDGLPA 555

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           +++  AL QA   RL IL  + + + ++  ++    PRV  + +P D+I  VIG  G++I
Sbjct: 556 SVLTGALSQAHEARLAILGVLGEAI-DAPDEMSPNAPRVLAVTVPVDKIGAVIGPKGQMI 614

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
             I + TGA + I+DDGTV I ++     EAAR  + +I +  VPEV + Y G VV+V+D
Sbjct: 615 NQIQDDTGADITIEDDGTVYIGATDGPSAEAARSAVNAIANPMVPEVGERYLGTVVRVVD 674

Query: 633 FGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           FGAF+     +DGL+H++QL      +RV    DV   G  + V++ + D RGKI L++
Sbjct: 675 FGAFISLTPGKDGLLHVTQLRKLNGGKRVDNVEDVATVGQKIEVEIREIDARGKISLAV 733


>gi|269219591|ref|ZP_06163445.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269210833|gb|EEZ77173.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 765

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 283/709 (39%), Positives = 414/709 (58%), Gaps = 40/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETG +ARQ++G+ LA   + T V A     ++ K+  DFFPLTV+ +ER+YA
Sbjct: 18  FGTRTIRFETGLLARQANGSALAYLDDDTTVFAATTASKAPKEHFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM  + + +  V+
Sbjct: 78  AGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFKKGMRNEVQVVATVMTINPDEAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AAS A  L+GLPF GP+ G ++  I+GQ+V  PR  E  + +  + ++G       A
Sbjct: 138 AINAASMATSLAGLPFSGPIGGTRMALIDGQWVAFPRWSELKRATFSMAIAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVVLDA---------IIFGHNECKPVI----EAISKLAKMCAKEPIV 231
           ++MVE +A + + D V+ A         +  G    KPVI    EA SKL + C K   V
Sbjct: 198 IMMVEAQAPEHA-DAVIKAGGAKPTEAEVAAGMEAAKPVIRTLCEAQSKLVEECGKP--V 254

Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSEHSSW 286
            D   F    +E  + ++E +    F P      K  R + +++L + +V   +      
Sbjct: 255 GDFPFFPDYTDEQYEAVEEKIG-GRFAPILGIVAKAERDEALNELTESVVEELAEAFPEE 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                 +V    + K +R  +L + VRMDGR    +R I+A+ G+L R HGS+LF RG+T
Sbjct: 314 EAAIAAAVNAAFK-KTMRHHVLTEGVRMDGRTPVEIRTITAEAGVLPRVHGSALFQRGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      ++ HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLKMEQQLDNLSPATSRRYIHHYNFPPYSTGETGRVGSPKRREIGHGHLAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
            A+   LP   +FPY +R VSE   S+GSSSM +VC S+L+L +AGVP+  PVAGIAMGL
Sbjct: 433 IALESQLPGREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLYNAGVPLKAPVAGIAMGL 492

Query: 467 VK---DGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           V    DG+  +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI   ++  AL 
Sbjct: 493 VSATIDGETKYCTLTDILGAEDALGDMDFKVAGTREYVTALQLDTKLDGIPAAVLDAALG 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  R  IL+ +++ + +   ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARFAILDLITEAI-DGPDEMAATAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A+++I+DDGTV I ++     EAAR+ + +I +  +PEV + + G VVK   FGAF+   
Sbjct: 612 AEISIEDDGTVFIGATDGPSAEAARQAVNAIANPQMPEVGERFVGTVVKTTTFGAFISLA 671

Query: 641 GARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             RDGL+HISQ+      +RV    DV+  GD V V++ + D RGK+ L
Sbjct: 672 PGRDGLLHISQIRRIVGGKRVENVEDVLNVGDKVEVEIAEIDPRGKVSL 720


>gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
 gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase
           protein [Ralstonia solanacearum IPO1609]
          Length = 481

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/481 (48%), Positives = 335/481 (69%), Gaps = 2/481 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +   ++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 I 479
           I
Sbjct: 481 I 481


>gi|315655673|ref|ZP_07908571.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315489737|gb|EFU79364.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 830

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 281/729 (38%), Positives = 421/729 (57%), Gaps = 43/729 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +A+Q+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 55  KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+    + +  V
Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180
           V++ A+S A  L+GLPF GP+ G ++  I+GQ+V  P   E +Q + ++ ++G       
Sbjct: 175 VAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234

Query: 181 -TQD-AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLA-------- 222
             +D A++MVE    + + D++         D +    +  KP I+ + +          
Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K   + P+  D +D     E M   ++ DL  +  I  K  R  +  +++   +   + E
Sbjct: 295 KETQEYPLFPDYED--NHFEAMKSEVEADLLAAIQIAYKLTRENRETEIRDAAIEKLAVE 352

Query: 283 HSSW--NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
              +   E E+ + F+ ++ K+VR  +L +  R+DGR  + +R +SA+V +L R HGS+L
Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIG
Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPVTHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA  A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+A
Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532

Query: 461 GIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL+    ++G  F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  ++
Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ M   + +   +L    PR+  + IP D+I  VIG  GK+I  
Sbjct: 593 LKGALGQARDARLKILDVMHAAI-DGPDELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFG 634
           I E TGA++ I+DDGTV I + +    EAAR+ + +I +  +PEV + + G VVK   FG
Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711

Query: 635 AFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L   VV
Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSLHA-VV 770

Query: 691 DQNTGKPIV 699
           D   G+ + 
Sbjct: 771 DDEDGEAVT 779


>gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp.
           SB155-2]
 gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp.
           SB155-2]
          Length = 732

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 279/724 (38%), Positives = 420/724 (58%), Gaps = 64/724 (8%)

Query: 19  ETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYL 78
           E G +A+Q++G+VL   G+TV+LATVV ++ + D +DF PLTV Y E++YA GKIPGG++
Sbjct: 17  EFGEVAKQTNGSVLLKSGKTVMLATVVMEKEMVD-EDFLPLTVQYIEKSYAAGKIPGGFV 75

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
           +RE +P + E L +R++DR++RPLF K Y   T + + V+  D ES   V+++ AASAAL
Sbjct: 76  KREQKPGDFETLTARIVDRALRPLFPKGYLYPTVITVMVLSADPESDLQVLALNAASAAL 135

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL------- 190
            +S +P    V G +V  ++G+ + NP L +  + +LDL+++GT++ +LM+E+       
Sbjct: 136 FVSDIPVRKAVSGLRVAKVDGEVLFNPPLSKLKESTLDLYLAGTKEELLMIEMAAIGSYK 195

Query: 191 ------------------------EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
                                   E N + E+ +   I  G +  +       K     A
Sbjct: 196 TEVVPTTVDPLMDPTLAEEVITIKEPNAMKEEELASIIAQGKDVIQIACNEYEKYFIESA 255

Query: 227 KE-------PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           KE       P  ID   ++ +EE  +  IKE ++       K  R + + ++ KK+    
Sbjct: 256 KEQLELELLPQTIDEDIWTYVEEIYAADIKEAVQAMA----KSERNELLKEIAKKISEDD 311

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++   W    I  V E  + K+VR ++L++  R DGR  + VR I  +  +L   HGS 
Sbjct: 312 VAKEQGWEYETIYKVVEKYKRKIVREMILNEGKRADGRGLKDVRPIDIKTNILPSAHGSC 371

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           LF RG+TQA+VV T+G + D Q  + L+  G +   FM+HYNF P + GE   + AP RR
Sbjct: 372 LFTRGETQALVVCTIGEKTDAQMYEMLTSKGPEYEHFMVHYNFPPFSVGEAKPISAPGRR 431

Query: 398 EIGHGRLARRAIHPVL--PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           E+GHG LARRA+ PV+  P+      T R+VSEI ES+GSSSMATVCG +LAL  A + +
Sbjct: 432 ELGHGNLARRALEPVVDVPEDK----TYRLVSEILESNGSSSMATVCGGALALKAANIDL 487

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           +  VAG+AMGL+ + D + IL+DI G EDH G MDFKVAGT  G+TAMQMD+K+GG+ + 
Sbjct: 488 ADLVAGVAMGLIVEDDKYAILTDIMGLEDHDGDMDFKVAGTHDGVTAMQMDIKLGGVQQE 547

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  ALQQA+  RLHIL  M +   +  +   E  P    + + P +I ++IG  GK I+
Sbjct: 548 ILEQALQQAREARLHILKIMEEAAEKIEIN-EENLPSSHTITVHPSKIVDIIGQAGKTIK 606

Query: 576 GIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP-------EVNKIYKGQV 627
            I+E+    ++ID D G VK+   +  ++ AA + I+ IT+ P       +   I KG++
Sbjct: 607 EIIEKFEVSIDIDRDKGKVKVTGKNRPKVIAACDYIQEITNKPKPEPVKFQEGDILKGKI 666

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
            +  +FGAFV   G  DGL+HIS+LS+ RV +  DVV  GD V V++L    +G KI+L 
Sbjct: 667 KRTTNFGAFVELPGGVDGLLHISKLSSGRVERVEDVVNIGDEVEVEVL--SQKGHKIELG 724

Query: 687 MKVV 690
           ++ V
Sbjct: 725 LRQV 728


>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
 gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
          Length = 730

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/709 (36%), Positives = 402/709 (56%), Gaps = 70/709 (9%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG I RQ+ G+V  T GET+V  +V  D    +  DF+PL+VNYQE
Sbjct: 22  SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLDDVPSEPSDFYPLSVNYQE 81

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE +  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 82  RFSAAGRTSGGFFKREGKLKDHEVLICRLIDRPLRPTMFKGFYHETQILSWVLSYDGLHS 141

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P  +++ AA  A+ LS +P    + G +V  ++ ++++NP   E ++  LDL ++GT  A
Sbjct: 142 PDSLAVTAAGIAVALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESELDLLLAGTDSA 201

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLEEE 243
           + M+E   N L+E+ +LDA+  G +  + +   +  L K C K  ++   K   ++L + 
Sbjct: 202 IFMIEGYCNFLTEEKLLDAVQIGQDAVRAICNEVGVLVKKCGKAKMLDAIKLPPAELYKH 261

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSS------------ 285
           + ++  ++L     I  K  R K +  L++K++S      Y S +               
Sbjct: 262 VEEIAGDELVKILQITSKVPRRKALASLEEKVLSILTEKGYVSKDERFGTPETVADLLEV 321

Query: 286 -------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
                                          ++E ++  VF+++ +K +R  +++   R 
Sbjct: 322 EDEDEEIVVDGEVDEGDVHIKPIGRKFSPLLFSEVDVKLVFKEVTSKFLRKRIVEGGKRS 381

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-ND 373
           DGR  + +R I ++ G+L R HGS+LF RG+TQ++ VVTLG ++  Q VD+L   +    
Sbjct: 382 DGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEFKR 441

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y F P   GEV R+GAPSRREIGHG L  RA+ P+LP    FPYT+R+ S ITES+
Sbjct: 442 FYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDFPYTVRVESTITESN 501

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V D ++F      +ILSDI+G ED  G
Sbjct: 502 GSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDASG 561

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG + GITA QMD+K+GGI+  +M  AL QA+ GR HIL EM K       +L 
Sbjct: 562 DMDFKVAGNEDGITAFQMDIKVGGITLPVMRKALLQARDGRQHILAEMLKCSPFPSERLS 621

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           ++ P + IM + P ++  +IG GGK ++ I+E+TG + ++  +DG VKI +  L+ IE +
Sbjct: 622 KYAPLIHIMKVNPKKVNIIIGSGGKKVKSIIEETGVEAIDTREDGIVKITAKDLSSIEKS 681

Query: 607 REMIRSITDVPEVNKIYK-----------GQVVKVMDFGAFVHFCGARD 644
           + +I  +T VP V  IY+            ++  V  +G FV     R+
Sbjct: 682 KSIINQLTMVPNVGDIYRHVLSLSCFSLNCEIKSVAPYGVFVEIAPGRE 730


>gi|157737429|ref|YP_001490112.1| polynucleotide phosphorylase/polyadenylase [Arcobacter butzleri
           RM4018]
 gi|187470965|sp|A8EU19|PNP_ARCB4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157699283|gb|ABV67443.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           RM4018]
          Length = 725

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 277/726 (38%), Positives = 425/726 (58%), Gaps = 56/726 (7%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  G+    E  ++A+QS+GAVLA  G  VVLATVV +      +DF PLTV Y E+T
Sbjct: 6   EFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKT 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA  K+PGG+++RE +P++ E L SR+IDRS+RPLF K Y   T + + V+  D      
Sbjct: 66  YAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQ 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            +S+ AA+AAL  S LP +  V G +V  I    V+NP  ++ +  +LDL+V+G+++ +L
Sbjct: 126 TLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSKEELL 185

Query: 187 MVELEA--------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           M+E++                     N++ ED +++AI F  N  K       K  +  +
Sbjct: 186 MIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKAFEEVS 245

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           KE   ++   F+ +EE +   +++    D++ +     K  R  Q+ D+ K M+S   +E
Sbjct: 246 KEKFEVELVKFT-IEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDVAK-MIS--KNE 301

Query: 283 HSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +   NE E  +++E +   + ++VR ++++++VR DGR  + VR IS +  +L  TH S 
Sbjct: 302 YCISNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSSC 361

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           LF RG+TQA+V+ T+   +D Q  + L+   T   +FM+HYNF   + GE   M    RR
Sbjct: 362 LFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGRR 421

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E+GHG LA++A+   + +   +  T+R+VSEI ES+GSSSMATVCG SLAL  AG+PIS 
Sbjct: 422 ELGHGNLAKKALEATIDK--DYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISD 479

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            VAG+AMG+V + D + IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGI  +++
Sbjct: 480 LVAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVL 539

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK GR HIL+ M    +E  +      P +E  AI P +I  VIG  G  I+ I
Sbjct: 540 KEALLQAKEGRTHILSLMKD--AEKDIVPSGALPLIEQFAIDPSKIMVVIGKAGATIKEI 597

Query: 578 VEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT-DVP---------EVNKIYK-- 624
           +E+    +++D ++GTVK++  +   I  A E I++I+ + P         +  K+Y   
Sbjct: 598 IEKFTVSIDLDKENGTVKVSGGNKQNIIDACEHIKTISNNAPSKKDASKNIDFEKLYSED 657

Query: 625 ----GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
               G+V ++ DFGAF+      +GL+HIS++S +RV   +DV+  G  + VK+L    +
Sbjct: 658 EVVIGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKV-KK 716

Query: 681 GKIKLS 686
            +I+LS
Sbjct: 717 DRIELS 722


>gi|323356776|ref|YP_004223172.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
           StLB037]
 gi|323273147|dbj|BAJ73292.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
           StLB037]
          Length = 765

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 278/731 (38%), Positives = 421/731 (57%), Gaps = 48/731 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV A   E T++L+     +  ++G DFFPLTV+ +ER+YA
Sbjct: 18  FGTRTIRFETGRLAQQAQGAVAAYLDEETMLLSATSAGKHPREGFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE Q+++ V+          +
Sbjct: 78  AGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSIAPGEFYDAL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING------QYVLNPRLDE-DQGSLDLFVSGT- 181
           ++ AAS +  +SGLPF GP+ G ++  I G      Q+V  P+ ++ +    DL V+G  
Sbjct: 138 AINAASMSTQISGLPFSGPIAGVRLALIPGHGEHADQWVAFPKAEQLEDAVFDLIVAGRV 197

Query: 182 ----QDAVLMVELEANQLS------------EDVVLDAIIFGHNECKPVIEAISKLAKMC 225
                 A++MVE EA + S            E VV + +       + +++A +++A+  
Sbjct: 198 LDDGDVAIMMVEAEATEGSWNLIKGGATKPNEQVVAEGLEAAKPFLRQLVDAQNEVARTA 257

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIK---EDLRVSCF-IPEKYVRCKQIDDLKKK-----MV 276
           +KE  +     F    +E    +     D  V  + I +K  R    D++K       + 
Sbjct: 258 SKE--IQSFPVFPAYSQETYDFVAGRAYDRLVPVYQIADKQERQNADDEVKTSVKEQLLA 315

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +  S E  +    E  + ++ +   +VR  +L + VRMDGR    +R + A+V ++ R H
Sbjct: 316 AVESGELPAVATLEFNAAYKSVTKTIVRGRILAEGVRMDGRGLADIRPLDAEVQVIPRVH 375

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS++F RG+TQ + V TL   + EQ +DSLS      ++ HYNF P +TGE  R+G+P R
Sbjct: 376 GSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITSKRYLHHYNFPPYSTGETGRVGSPKR 435

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+ 
Sbjct: 436 REIGHGFLAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLR 495

Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   ITA+Q+D K+ GI
Sbjct: 496 APVAGIAMGLVTDEVDGQTRYAALTDILGAEDALGDMDFKVAGTAEFITAIQLDTKLDGI 555

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +++  AL QAK  RL ILN ++  + ++  ++    PRV  + IP D+I  +IG  GK
Sbjct: 556 PSSVLAAALTQAKEARLTILNVLNAAI-DAPDEMAPTAPRVISVQIPVDKIGELIGPKGK 614

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKV 630
            I  I ++TGA+++I+DDGTV I ++     EAAR  + +I +   PEV + + G VVK+
Sbjct: 615 TINSIQDETGAQISIEDDGTVYIGATDGPSAEAARAQVNAIANPTNPEVGEQFLGTVVKI 674

Query: 631 MDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
             FGAFV     +DGL+H+S++      +RV    DV+  G  + V++   DDRGK+ L 
Sbjct: 675 ATFGAFVSLLPGKDGLLHVSEVRKLAGGKRVENVEDVLSVGRKILVRITKIDDRGKLSLE 734

Query: 687 MKVVDQNTGKP 697
             V+D++   P
Sbjct: 735 -PVLDEDAATP 744


>gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 746

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 280/727 (38%), Positives = 408/727 (56%), Gaps = 78/727 (10%)

Query: 19  ETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYL 78
           + G++A+Q+ GA L     TV+LATV  D + +  ++F PLTV Y E++YAVGKIPGGY+
Sbjct: 15  DIGKVAKQAAGAALLKIKNTVILATVARDDT-QVSENFVPLTVQYVEKSYAVGKIPGGYI 73

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
           +RE++P + E L SR+IDRS+RPLF K Y   TQ+ + V+  D E    V ++ AA AAL
Sbjct: 74  KRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDLQVAALNAAGAAL 133

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLMVELEA----- 192
            LS +P    V G ++ Y++G YV+NP      + +LDL+V+GT++ +LM+E+ +     
Sbjct: 134 YLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTKEELLMIEMRSIASME 193

Query: 193 ---------------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
                                      N+  ED +L AI    N       A        
Sbjct: 194 SVSLPVMAIDPMLDPTLAENMMAKQVINEFPEDAILAAIDTAQNAITEATTAYENTFVSL 253

Query: 226 AKEPIVIDSKD-------FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
            KE  ++D K        F+ ++E   + + + +             K +D + K  ++ 
Sbjct: 254 KKEDAILDYKQDLTSDAIFAYIDEFYKEAVYDAINQMAKSERASELSKIVDAILKDNIAT 313

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
                  W++  + SV +  + K+VR ++++K+VR DGR    +R IS +  LL   HGS
Sbjct: 314 L----EGWDKALVDSVLQTYKKKIVREMIVEKRVRADGRKLTEIRPISIETNLLPLAHGS 369

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
            LF RG TQA+V+ TLG  +D Q  D L+   +  + FM++YNF   + GE S + AP R
Sbjct: 370 CLFTRGQTQALVIATLGNDKDAQMYDLLTEKSSVSDTFMVNYNFPGFSVGEASPLRAPGR 429

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           RE+GHG LARRA+ PV+        T+R+VSEI ES+GSSSMAT+CG +LAL  AGV I 
Sbjct: 430 RELGHGNLARRALEPVV--DINRLQTIRLVSEILESNGSSSMATICGGALALKAAGVEIE 487

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VAGIAMGLV +GD   +LSDI G EDH G MDFKVAGT  GITA+QMD+K+GGIS ++
Sbjct: 488 KLVAGIAMGLVFEGDKHAVLSDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGISRDV 547

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+ GR HIL  M K  SE  +      P++E+  + P +I ++IG  GK IR 
Sbjct: 548 LKEALYQAREGREHILAIMEKA-SEEIVINNAVLPKLELFNVDPSKIVDIIGQAGKTIRE 606

Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-------------------- 615
           I+E+    +++D + G VKIA  +  +++AA+E I  IT+                    
Sbjct: 607 IIEKFEVSIDLDREKGEVKIAGENKEKVDAAKEHIIQITNKASFGGRGGHGRDRDNKYPT 666

Query: 616 -----VPEV--NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                VP    +++  G V +++DFGAFV   G  DGL+H+S+++  RV K SD +    
Sbjct: 667 KESKPVPTFIQDEVVDGTVKRIVDFGAFVELPGGIDGLLHVSKIADHRVDKVSDYLALEQ 726

Query: 669 TVWVKLL 675
            V VK+L
Sbjct: 727 KVRVKIL 733


>gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa
           Japonica Group]
          Length = 982

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/703 (37%), Positives = 419/703 (59%), Gaps = 27/703 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  GR +  ETG++AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+YQE+ 
Sbjct: 64  EFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQ 123

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI------INVMQHD 121
           YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E QV+      +NV+  D
Sbjct: 124 YAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQVMNATIIMVNVISSD 183

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +  P V++  A+SAALMLS +P+ GP+   +V  I+G +VLNP +DE     L+L  + 
Sbjct: 184 GKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYAC 243

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSK 235
           ++D  LM++++A +++E  +   +   H E    I    +LAK   K+       +I  K
Sbjct: 244 SRDKTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDK 303

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            + K+       I+E    S +   K+ R + ++++ + + +    E    +   +    
Sbjct: 304 SYEKIRTLSEAPIEEVFTDSTY--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAV 361

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++ +V+R  +++K +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG
Sbjct: 362 DTVRKQVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLG 421

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +DS+ G     FM+HY+F P +  EV++ G  +RRE+GHG LA +A+  VLP 
Sbjct: 422 APGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPP 481

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471
             +FPYT+R+ SE+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV + D    
Sbjct: 482 EGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQTTG 541

Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
               + IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R
Sbjct: 542 DISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEPARKAR 601

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL+ M + +S +R      +PR+  ++   D +R ++    K    I ++TGA+V++ 
Sbjct: 602 NQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLLFHRKK----IEQETGARVSV- 656

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
            DGTV I + +   ++ A E +  +     EV + YKG V  + ++GAFV F G + GL+
Sbjct: 657 SDGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLL 716

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           HIS+LS ++V+K SDVV  G  + +  +  D RG IKLS+K  
Sbjct: 717 HISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKAT 759


>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
          Length = 865

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/675 (38%), Positives = 397/675 (58%), Gaps = 74/675 (10%)

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM--------- 139
           +L+ R+IDR +RP   K +  ETQ++  V  +D   SP  +++ AA  A+          
Sbjct: 124 VLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAICSCSYLPQSF 183

Query: 140 ----LSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
               LS +P +  + G ++  IN Q+V+NP  ++ D   LDL ++GT  A+LM+E   + 
Sbjct: 184 LCRALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMDDSELDLVMAGTDSAILMIEGYCDF 243

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIKEDL 252
           L+E+ +L A+  G    + + +AI  L + C K+ +  D+ D    +L   +  +  ++L
Sbjct: 244 LTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKM-FDAIDLPPPELYRHVEDISGDEL 302

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSSW-------------------- 286
             +  I EK +R K +  L++K+++      Y + + SS                     
Sbjct: 303 VKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADVIEEEDEDEVIVD 362

Query: 287 ---NEGEI----VS---------------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
              +EGE+    VS               VF+++ +K +R  +++   R DGR    +R 
Sbjct: 363 GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGKRSDGRSPCELRP 422

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN-DFMMHYNFLPC 383
           I++Q GLL R HGS+LF RG+TQA+ VVTLG  +  Q +D+L  T+ +  F + Y F P 
Sbjct: 423 INSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQYTFPPS 482

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           + GEV R+GAP+RREIGHG LA RA+ P+LP    FPYT+R+ S ITES+GSSSMA+VCG
Sbjct: 483 SVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGSSSMASVCG 542

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKVAGTD 497
             LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED  G MDFKVAG +
Sbjct: 543 GCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASGDMDFKVAGNE 602

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
           +GI+A QMD+K+ GI+  IM  AL QA+ GR HILNEMSK        L  + P + +M 
Sbjct: 603 NGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKVLSPYAPLIHVMK 662

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           + P+++  +IG GGK I+ I+E+TG   ++  DDGTVKI +  L+ +E ++ +I ++T V
Sbjct: 663 VKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKSKAIIANLTMV 722

Query: 617 PEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           P+V +IY+   +K +  +GAFV     R+GL HIS+LS+  +AK  D  K GD + VKL+
Sbjct: 723 PKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAFKVGDRIDVKLI 782

Query: 676 DFDDRGKIKLSMKVV 690
           + +D+G+++LS + +
Sbjct: 783 EINDKGQLRLSSRAL 797


>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
          Length = 778

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 264/675 (39%), Positives = 397/675 (58%), Gaps = 74/675 (10%)

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM--------- 139
           +L+ R+IDR +RP   K +  ETQ++  V  +D   SP  +++ AA  A+          
Sbjct: 37  VLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAICSCSYLPQSF 96

Query: 140 ----LSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
               LS +P +  + G +V  IN Q+V+NP  ++ D   LDL ++GT  A+LM+E   + 
Sbjct: 97  LCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTDSAILMIEGYCDF 156

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIKEDL 252
           L+E+ +L A+  G    + + +AI  L + C K+ +  D+ D    +L   +  +  ++L
Sbjct: 157 LTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKM-FDAIDLPPPELYRHVEDISGDEL 215

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSSW-------------------- 286
             +  I EK +R K +  L++K+++      Y + + SS                     
Sbjct: 216 VKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADVIEEEDEDEVIVD 275

Query: 287 ---NEGEI----VS---------------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
              +EGE+    VS               VF+++ +K +R  +++   R DGR    +R 
Sbjct: 276 GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGKRSDGRSPCELRP 335

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN-DFMMHYNFLPC 383
           I++Q GLL R HGS+LF RG+TQA+ VVTLG  +  Q +D+L  T+ +  F + Y F P 
Sbjct: 336 INSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQYTFPPS 395

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           + GEV R+GAP+RREIGHG LA RA+ P+LP    FPYT+R+ S ITES+GSSSMA+VCG
Sbjct: 396 SVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGSSSMASVCG 455

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKVAGTD 497
             LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED  G MDFKVAG +
Sbjct: 456 GCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASGDMDFKVAGNE 515

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
           +GI+A QMD+K+ GI+  IM  AL QA+ GR HILNEMSK        L  + P + +M 
Sbjct: 516 NGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKVLSPYAPLIHVMK 575

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           + P+++  +IG GGK I+ I+E+TG   ++  DDGTVKI +  L+ +E ++ +I ++T V
Sbjct: 576 VKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKSKAIIANLTMV 635

Query: 617 PEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           P+V +IY+   +K +  +GAFV     R+GL HIS+LS+  +AK  D  K GD + VKL+
Sbjct: 636 PKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAFKVGDRIDVKLI 695

Query: 676 DFDDRGKIKLSMKVV 690
           + +D+G+++LS + +
Sbjct: 696 EINDKGQLRLSSRAL 710


>gi|242310417|ref|ZP_04809572.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239522815|gb|EEQ62681.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 714

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 280/716 (39%), Positives = 415/716 (57%), Gaps = 74/716 (10%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + A+Q  G+V    G  VVLATV  D      +DF PLTV Y E+ YA GK PGGY++RE
Sbjct: 19  KFAKQCSGSVYLQSGNNVVLATVAIDTQEVVEEDFLPLTVQYIEKAYAAGKFPGGYIKRE 78

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P + E L +R++DRS+RPLF K Y   TQ+ I V+  D ++   ++++ AASAAL +S
Sbjct: 79  AKPGDFETLSARIVDRSLRPLFPKGYCYPTQITILVLSADQDADLQLLALNAASAALYVS 138

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE--------- 191
            +P   PV   ++  I   +V+NP L + ++ SLDLFVSG  + +LM+E+          
Sbjct: 139 EIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVSGVNEDLLMIEMRTFGGIKTQE 198

Query: 192 ------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
                 AN+L E+ +++A+    N       AIS+ +K+      V   KD+ K    + 
Sbjct: 199 GQAIFSANELQEEEMIEALEIAKN-------AISQKSKL-----FVEHFKDYIKPSLNLE 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS------------WNEG---- 289
           Q  K  +   C    +Y++ + + +LK  + S   +E  S            W E     
Sbjct: 247 QTRKTYV---CQKILEYIQSEHLGELKGIIQSLSKTERHSLLMAFARKIQKEWEEKYPQD 303

Query: 290 ------EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
                   +     I+ +++R ++L++  R DGR  + VR IS     L   H S LF R
Sbjct: 304 TQDLSKRTLETILKIKREIIRAMVLEESTRADGRGLKEVRPISIDTNFLPNAHSSVLFTR 363

Query: 344 GDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
           G TQA+VV TLG   D Q  + L+   + +  FM+HYNF P + GE S + AP RRE+GH
Sbjct: 364 GQTQALVVATLGGDMDAQSYELLTNKASSKERFMVHYNFPPFSVGEASSISAPGRRELGH 423

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA+RA+   +        T+R+VSEI ES+GSSSMATVCG SLAL+ AG+  +  VAG
Sbjct: 424 GNLAKRALEASIINGDM--RTIRLVSEILESNGSSSMATVCGGSLALVAAGIECTSLVAG 481

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           +AMGLV + D +++L+DI G EDH G MDFKVAG+  GITAMQMD+K+GG++  I+  AL
Sbjct: 482 VAMGLVCENDKYVVLTDIMGLEDHDGDMDFKVAGSRHGITAMQMDIKLGGLNMQILKDAL 541

Query: 522 QQAKRGRLHILNEMSK-----VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
            QAK  R HILN M +     +L+ES L      P  +I +I P +I  VIG  GK I+ 
Sbjct: 542 NQAKEARNHILNLMEEARGKIILNESVL------PSSQIFSIEPSKIIEVIGQAGKTIKE 595

Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT----DVPEVNKIYKGQVVKVM 631
           I+E+ G  ++++ ++G VK++ S+  ++EAA+E I  IT    D+ +V  IY+G+V KV+
Sbjct: 596 IIEKFGVAIDLNRENGEVKVSGSNKEKVEAAKEHILKITKNLQDIYKVGDIYQGKVKKVV 655

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +FGAFV      DGL+HIS+++  R  K SDV+  G+ V V++L   ++ K++L +
Sbjct: 656 EFGAFVELPEGYDGLLHISKITNSRDEKASDVLSVGEMVEVEVLSL-NKNKVELGL 710


>gi|222823533|ref|YP_002575107.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
           RM2100]
 gi|257096671|sp|B9KFM1|PNP_CAMLR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222538755|gb|ACM63856.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
           RM2100]
          Length = 702

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/673 (40%), Positives = 399/673 (59%), Gaps = 49/673 (7%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            +T ++A+Q+ GAVL      VVLATV  +  + + +DF PLTV Y E+ YA GKIPGGY
Sbjct: 14  FDTDKVAKQAAGAVLMQEKNAVVLATVAREEKMVE-EDFLPLTVQYIEKAYAAGKIPGGY 72

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           ++RE++P ++E L +R+IDRS+RPLF K Y   TQ+++ V+  D E    V+S+ AAS A
Sbjct: 73  VKRETKPGDSETLSARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVMSLNAASVA 132

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA---- 192
           L LS +P + PV G ++  IN ++VLNP   E + S LDL+V+G +D +LM+E+ A    
Sbjct: 133 LYLSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDLYVAGVKDELLMIEMRALSNK 192

Query: 193 -------NQLSEDVVLDAIIF-------GHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
                  N+LSED  L A+ F       G NE +    A  K +K+  K    I+S +  
Sbjct: 193 KDNQHCMNELSEDDTLKALDFASSAILRGSNEYEKAFAAYRKNSKLEFK----IESDNIQ 248

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++   +  I + L+++     K  R  +I  + K++ S   +  + W   +I       
Sbjct: 249 IIDYIKNTYITK-LKIAINQMAKSERASEILQIAKEIESESMAIENEWKFEDIEKALHVC 307

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  ++++  R DGR  + VR I  +  +L   HGS LF RG TQA+VV TLG   
Sbjct: 308 KRELVRNQIINENKRADGRGLKDVRKIDIETNILPSAHGSCLFTRGQTQALVVATLGNDN 367

Query: 359 DEQYVDSLSGTQRN----DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           D Q  D L  T++N     FM++YNF   + GE S + AP RRE+GHG LA+RA++P + 
Sbjct: 368 DAQMSDML--TEKNPICEKFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSV- 424

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
             A + +T+R+VSEI ES+GSSSMATVCG +LAL  AGV   K VAG+AMGLV + + + 
Sbjct: 425 -DADYIHTIRLVSEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFEEEKYA 483

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDH G MDFKVAG+  GITA+QMD+K+GGI + ++  AL QAK  R +ILN 
Sbjct: 484 ILTDIMGLEDHDGDMDFKVAGSHDGITALQMDIKLGGIEQKVLQEALYQAKEARGYILNL 543

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTV 593
           M +   E  +      P+VEI  + P++I ++IG GGK I+ I+E+    +++D D G V
Sbjct: 544 MQEA-CEKIIVNEAILPKVEIFNVDPNKIPDIIGQGGKTIKDIIEKFEVNIDLDRDKGEV 602

Query: 594 KIASSSLAEIEAAREMI------------RSITDVP--EVNKIYKGQVVKVMDFGAFVHF 639
           KIA      I  ++E I            R   ++P  ++ + + G+V KV++FG FV  
Sbjct: 603 KIAGIDHNLISQSKEYILNLLHSKGSNKRRDKKEMPKFDIGEEFLGRVQKVVEFGVFVEL 662

Query: 640 CGARDGLVHISQL 652
               DGL+H S++
Sbjct: 663 KEGVDGLLHNSKI 675


>gi|260905182|ref|ZP_05913504.1| polynucleotide phosphorylase/polyadenylase [Brevibacterium linens
           BL2]
          Length = 740

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 277/712 (38%), Positives = 415/712 (58%), Gaps = 40/712 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +    ++ ETGR+A+Q+ G+ +A    ET++ +     ++ ++G DFFPLTV+ +ER YA
Sbjct: 17  YGSHTIRFETGRLAQQAAGSAVAYLDDETMLFSATSAGKNPREGFDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + +L  R+IDR +RP F K  +NE QV++ VM    +     +
Sbjct: 77  AGRIPGSFFRREGRPSTDAVLTCRLIDRPLRPSFVKGLRNEVQVVVTVMSIHPDHIYDAL 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AAS +  LSGLPF GP+ G ++  I+ Q+V  P   + D    ++ V+G       A
Sbjct: 137 AINAASMSTQLSGLPFSGPIGGVRIALIDDQWVAFPNHSQLDDAVFNMVVAGRVVGDDVA 196

Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISK----LAKMCAKE---- 228
           ++MVE EA   + D +         + +  G    KP I  + +    LA   AK     
Sbjct: 197 IMMVEAEATDNAIDRIKTGATAPTEEVVAEGLEAAKPFISELCRAQQELADSAAKPTVEF 256

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+  D +D   + E + ++ +     +  I +K  R    + L  ++      E  +  E
Sbjct: 257 PVFKDYQD--DVYEAVRELAEAKQTENFQIADKQEREAAGEVLLSELFDKLG-ERFAGRE 313

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            EI      +  +VVR  +L +++R+DGR  + +R ++A+  ++ R HGS++F RG+TQ 
Sbjct: 314 KEIAGALNGLTKQVVRKRILTEQIRIDGRGLKDIRPLTAETNVIPRAHGSAIFERGETQI 373

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL   + EQ++DSLS      +M HYNF P + GE  R+G+P RREIGHG LA RA
Sbjct: 374 LGVTTLNMLKLEQHIDSLSPVTTKRYMHHYNFPPYSVGETGRVGSPKRREIGHGALAERA 433

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP+   FPY +R VSE   S+GS+SM +VC S+LA++ AGVP+  PVAGIAMGLV 
Sbjct: 434 LVPVLPKREDFPYAIREVSEALGSNGSTSMGSVCASTLAMLSAGVPLQAPVAGIAMGLVS 493

Query: 469 D------GDD--FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           D      GD   +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+  +++  A
Sbjct: 494 DVISTDTGDQTAYAALTDILGAEDAFGDMDFKVAGTRDFITAIQLDTKLDGLPASVLGAA 553

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L+QA+  R+ IL+ +++ + ++  ++    PR+  + IP D+I  VIG  GK+I  + E 
Sbjct: 554 LKQAQEARMVILDVIAEAI-DAPAEMAPTAPRIISVNIPVDKIGEVIGPKGKMINQMQED 612

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA ++I+DDGTV I ++  A  EAAR MI +I +  VPEV + Y G VVK M FGAFV 
Sbjct: 613 TGADISIEDDGTVLIGATDGAAAEAARSMINAIANPQVPEVGERYLGTVVKTMSFGAFVS 672

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
               +DGL+HIS+L      +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 673 LTPGKDGLLHISELRKLNDGKRVEDVEDVVGVGQKVQVEITKIDDRGKLSLS 724


>gi|269795632|ref|YP_003315087.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Sanguibacter keddieii DSM 10542]
 gi|269097817|gb|ACZ22253.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Sanguibacter keddieii DSM 10542]
          Length = 735

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/721 (37%), Positives = 418/721 (57%), Gaps = 41/721 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+  A   GET++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLARQAAGSAAAYLDGETMLLSATTVGKHPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+    + +   +
Sbjct: 78  AGRIPGSFFRREGRPSTEAILTCRLIDRPLRPTFVKGLRNEVQVVVTVLAAHPDDAYDTL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT----QDA 184
           ++  AS +  LSGLPF GPV   ++  ++GQ+V  P+  D+++   D+ V+G       A
Sbjct: 138 AINVASLSTQLSGLPFSGPVGAVRIALVDGQWVAFPKYSDKEKAVFDMVVAGRVAGDDVA 197

Query: 185 VLMVELEANQLS-------------EDVVLDAI----IFGHNECKPVIEAISKLAKMCAK 227
           ++MVE EA   S             E+VV + +    +F    C+      ++ AK   +
Sbjct: 198 IMMVEAEATDNSWTLIKDEGVAAPTEEVVAEGLEASKVFIRQLCEAQAALAARAAKPVRE 257

Query: 228 EPIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            P+ +D +D  ++ +E +++  + + L ++    +K  R  ++D++K + +   + +   
Sbjct: 258 FPLFLDYQDDAYAAIEAQVATPLGQALTIA----DKQDRENRLDEIKAEALEALAGQFEG 313

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ +    +  K++R  +L   VR+DGR    +R +SA+V ++ R HGS++F RG+
Sbjct: 314 -REKELSAAVRSVTKKLIRQRVLTDGVRIDGRGLADIRTLSAEVEVVPRVHGSAIFERGE 372

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + + TL     EQ +DSL    R  +M +YNF P +TGE  R+G+P RREIGHG LA
Sbjct: 373 TQIMGITTLNMLRMEQQIDSLGPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALA 432

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 433 ERALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMG 492

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           L+ D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 493 LISDTVDGKPRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLGGAL 552

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QA+  R  IL+ + + +     ++    PRV  + +P D+I  VIG  GK+I  I E+T
Sbjct: 553 TQARDARFAILDVLGEAIDVPD-EMSPHAPRVIAVKVPVDKIGEVIGPKGKMINQIQEET 611

Query: 582 GAKVNIDDDGTVKIASS--SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGTV I ++    AE   A     +   VPEV + + G VVK+  FGAF+  
Sbjct: 612 GADISIEDDGTVYIGATDGPSAEAARAAINAIANPHVPEVGERFVGTVVKIAPFGAFISL 671

Query: 640 CGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L   V +   G
Sbjct: 672 SPGKDGLLHISQIRKLVGGKRVENVEDVLSIGQKVQVEIGEVDPRGKLSLHAVVDEAEAG 731

Query: 696 K 696
           +
Sbjct: 732 Q 732


>gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1]
 gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1]
          Length = 729

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/715 (37%), Positives = 419/715 (58%), Gaps = 51/715 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           +EI       K E  +IA+Q+ GAV+   G+ V++A V  D    + +DF PLTV Y ER
Sbjct: 6   IEINLNNLDEKYEFNKIAKQASGAVMYRQGKAVLIAAVAVDEKAVE-EDFLPLTVQYMER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA  KIPGG+++RE++P + E L SR++DRS+RPLF K +     + + V+  D E   
Sbjct: 65  SYAAAKIPGGFIKRETKPGDFETLTSRIVDRSLRPLFPKGFYYPVTISVMVVSSDSEVDM 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AA+AAL +S +  +  +   +V  I  + VLNP L + D+  LDL V G++  +
Sbjct: 125 QVAALHAANAALYVSDISVQRSIAAVRVGKIEDELVLNPTLSQQDESVLDLLVVGSEQDI 184

Query: 186 LMVELEA--NQLSEDVVLDAI---------IFGHNECKPV-----IEAISKLAKMCAKEP 229
           +M+E+ A  ++  +D+ +D I         I  H EC  V     ++AI+  AK   +E 
Sbjct: 185 IMIEMRAIASEKIDDIEMDMIDPMMGGVPLILEHQECNEVDNEALVDAIAFAAK-AIEEA 243

Query: 230 IVIDSKDFS--------------KLEEEMSQMIKEDLR--VSCFIPE--KYVRCKQIDDL 271
             I  K+F+              K++EE+   IKE+    V+  I    K  R  ++  +
Sbjct: 244 SAIYEKEFTPVMRTPLGLSLAEEKVDEELYAYIKENYSEAVAKAISHMAKSERSTELKKV 303

Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331
           + +++    SE    ++  +  V +  +  VVR ++LDK +R DGR  + VR I+ +  +
Sbjct: 304 RAQIMEALESEGKEADKELVSKVLDRYKTTVVRDMILDKGIRADGRGLDEVRPITIETNI 363

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVS 389
           L   HGS LF RG TQA+V  TLG ++D Q  + ++   TQ  +FM+HYNF   + GE  
Sbjct: 364 LPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNTQSENFMVHYNFPGYSVGEAK 423

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
            +GAP RRE+GHG LA+RA+ PV+P    +  T+R+VSE+ ES+GSSSMAT+CG +LAL 
Sbjct: 424 FIGAPGRRELGHGNLAKRALEPVIP--INYDGTIRLVSEVLESNGSSSMATICGGALALR 481

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
            A V + + VAGIAMGLV DG+   +L+DI G EDH G MDFK+AGT +GITA+QMD+K+
Sbjct: 482 AAEVDMVELVAGIAMGLVTDGERVAVLTDIMGLEDHDGDMDFKIAGTRNGITALQMDIKL 541

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
           GGI    + +AL++A +G+ HIL+ M +  +E +++  +  P  E  +I P +I ++IG 
Sbjct: 542 GGIDLITLKVALEKAAQGKDHILDLMEE--AEKKMESSQALPSTEHFSINPQKIADIIGK 599

Query: 570 GGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP-------EVNK 621
            G  IR I+E+    +++D D G VK++     ++ AA+E I  I + P       EV K
Sbjct: 600 AGATIRDIIEKFEVSIDLDRDKGGVKLSGHDKEKVAAAKEHIEKIANAPVRKQMQYEVGK 659

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            Y G+V K++DFG FV      D L+HIS+++ ERV   ++   EGD + V +++
Sbjct: 660 TYVGKVKKIVDFGIFVEMPDGFDALLHISKVAKERVNNLNERYHEGDDITVVVME 714


>gi|170781592|ref|YP_001709924.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|257096675|sp|B0RGW7|PNP_CLAMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169156160|emb|CAQ01301.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 757

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 276/719 (38%), Positives = 413/719 (57%), Gaps = 45/719 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ E GR+A+Q+ GAV A   E T++L+     +  KD  DFFPLT++ +ER+Y
Sbjct: 17  KYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKDNFDFFPLTIDVEERSY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE QV+I V+    +     
Sbjct: 77  AAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDS 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180
           +++ AASA+ MLSG+PF GP+ G ++  I  Q+V+ P+  +  +   D+ V+G       
Sbjct: 137 LAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDAQ 196

Query: 181 -TQD-AVLMVELEANQLSEDVVL-------DAIIF-GHNECKPVIEAI--------SKLA 222
             +D A++MVE EA + + D++        +A++  G    KP I  +         + A
Sbjct: 197 GNEDVAIMMVEAEATEGAWDLIQAGATKPDEAVVAQGLEAAKPFIRQLVAAQASLAQQAA 256

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS- 281
           K     P+ +     S   + +S +  E+L     I +K  R    D LK +     ++ 
Sbjct: 257 KPTVDYPVFLPYAQQSY--DAVSALALEELGTVYRIADKIERQDADDALKTRTKEAVAAK 314

Query: 282 ----EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               E       E  + ++ +   VVR  +L   +RMDGR    +R + A+V ++ R HG
Sbjct: 315 VEAGELPQSALTEFSAAYKSVTKTVVRGRILRDGIRMDGRGLADIRPLDAEVQVIPRVHG 374

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S++F RG+TQ + V TL   + EQ +DSLS   +  FM HYNF P +TGE  R+G+P RR
Sbjct: 375 SAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRFMTHYNFPPYSTGETGRVGSPKRR 434

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  
Sbjct: 435 EIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRA 494

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 495 PVAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIP 554

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  AL+QAK  R  IL  +++ + ++  ++    PRV  + IP D+I  +IG  GK 
Sbjct: 555 TSVLDGALKQAKEARTAILGVLNQAI-DAPDEMAPTAPRVISVNIPVDKIGELIGPKGKT 613

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKVM 631
           I  I ++TGA ++I++DG V I +      EAAR  + +I +   PEV + + G VVK+ 
Sbjct: 614 INAIQDETGADISIEEDGAVYIGAVDGPSAEAARAQVNAIANPTNPEVGESFLGTVVKIA 673

Query: 632 DFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            FGAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRGK+ L+
Sbjct: 674 TFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEITKIDDRGKLSLA 732


>gi|313681466|ref|YP_004059204.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154326|gb|ADR33004.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
           DSM 16994]
          Length = 725

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 282/722 (39%), Positives = 419/722 (58%), Gaps = 59/722 (8%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           + VE+    +       ++A Q++GA     G+TV+LATVV D +    +DF PLTV Y 
Sbjct: 3   YNVELTLQNKTEAYAFNQVAAQANGAAWLKCGDTVILATVVIDETDFVDEDFLPLTVQYI 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E++YA GK PGG+++RE++P++ E L SR++DRS+RPLF K + N  Q+ + V+  D E+
Sbjct: 63  EKSYAAGKFPGGFIKRETKPSDFETLTSRIVDRSLRPLFPKGFANPVQITVMVLSADREA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
              V+++ AASAAL +S +     V   +V  I+G+ V NP L + Q S LDL+++G+++
Sbjct: 123 DLQVLALNAASAALYVSDIDIFNSVSAVRVGKIDGEIVFNPTLSQLQKSTLDLYLAGSKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIE--------AISKLAKMCAKEPIVI--- 232
            +LM+E++     E  +LD  I       P+++        A+ +   M   E I I   
Sbjct: 183 DMLMIEMQTLGSDEVEILDIGII-----DPLVDPAMSTPSVAVRRSNAMSEDELIRILAS 237

Query: 233 ----DSKDFSKLEEEMSQMIKEDLRVSCFIPE------KYVRCKQIDDLKKKMVSYFSSE 282
                S+  S  E       K    +   + E      +YVR    DDLK+ +     +E
Sbjct: 238 AQIALSEANSAYESAFKSYAKPPFELQTIVSEISGEMIEYVRSVHTDDLKRGINQMAKTE 297

Query: 283 HSS---------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
            S+               WNE E+    E ++  +VR  +LD+KVR DGR    VR IS 
Sbjct: 298 RSTALRTIRKTILKEKPEWNEHELKKAIESVKRSMVRAQILDEKVRADGRALNEVRPISI 357

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCAT 385
           +  +L   H S+LF RG TQA+VV+TLG  +D Q  ++L  SGTQ   FM+HYNF   + 
Sbjct: 358 ETNVLPSAHASALFTRGQTQALVVLTLGGAKDAQMFENLTDSGTQNEGFMVHYNFPGFSV 417

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSS 445
           GE S +GAP RRE+GHG LA+RA+     +  Q   T+R+VSE+ ES+GSSSMATVCG  
Sbjct: 418 GEPSPIGAPRRRELGHGNLAKRALEGACVRNGQ---TIRLVSEVLESNGSSSMATVCGGY 474

Query: 446 LALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AL    + ++ P+AG+AMG+V++G    IL+DI G EDH G +DFKVAG+  GITAMQM
Sbjct: 475 MALRAGDIEVADPIAGVAMGMVQEGSRHAILTDIMGLEDHDGDLDFKVAGSKGGITAMQM 534

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR 564
           D+K+GGI  +++  AL QAK  R HI++ M  + SE +++L E T P  ++  I P  I 
Sbjct: 535 DIKLGGIHLDVLKEALYQAKEARSHIIDIM--ISSEDKIELNEGTLPSTDLFHIDPSFIG 592

Query: 565 NVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKI 622
           ++IG  GK IR I+E+    ++ID   G+VK+   +   +  AR+ I  I +    V K+
Sbjct: 593 DIIGQAGKTIREIIERFDVTIDIDKKKGSVKLTGKNRDGLRGARDHIEGIVSGATPVEKV 652

Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                   KG+V K++DFGAF+   G  DGL+HIS+LS   V++ SDVV EGD + V+++
Sbjct: 653 EYKVGDVVKGKVKKIVDFGAFIELPGGVDGLIHISKLSDGHVSRVSDVVNEGDELMVEIV 712

Query: 676 DF 677
           +F
Sbjct: 713 EF 714


>gi|299115591|emb|CBN75793.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 834

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 274/744 (36%), Positives = 419/744 (56%), Gaps = 53/744 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  + +   GR L  ETG++ RQ+ GAV+A  GETVV +T   DR      +F PL V+Y
Sbjct: 23  VSVLRVTVGGRDLSFETGKVGRQASGAVMARDGETVVYSTACTDRKTTT-SNFSPLRVDY 81

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            ER  A G   GGY +R+ R ++ E L+SR++DR +RP     + +ETQ++  V+ +D  
Sbjct: 82  MERFSAAGMTSGGYNKRDGRASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTV 141

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLD-EDQGSLDLFVSGT 181
             P  +++ AASAAL LS +P    + G  V     G+ V+NP +       L+L ++GT
Sbjct: 142 HPPVPLAITAASAALALSNVPLVRAIAGVTVGMDSEGELVVNPEISVAAMSPLNLTIAGT 201

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-- 239
            D VLM+E E++ + E+ ++ AI  GH   + +   I + +++  KE    D+       
Sbjct: 202 ADGVLMIEGESDFVCEEDMMRAIEVGHAAVRDLCLGIEEWSEVAGKEKKT-DTLRLPPEG 260

Query: 240 LEEEMSQMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEI 291
           L+E M +  ++ +  + F       ++    +++  L ++ +     E   +  ++  ++
Sbjct: 261 LDEIMERDFQDKVDHALFESGEGKDDQSSAMRELTGLTREALQVAEGEEPGNGRYSTYDV 320

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +  + + +K +RT++ +   R DGR ++ VR IS + GLL RTHGS LF RGDTQAI  
Sbjct: 321 ETALKKLYSKRLRTIVKETGRRCDGRRTDEVRPISIETGLLPRTHGSCLFTRGDTQAIAT 380

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           VTLG     Q  D ++G     F + Y F P   GE  R+G P RRE+GHG LA +A+  
Sbjct: 381 VTLGGSGSSQKTDGITGMILKHFYLQYTFPPSCVGETGRIGGPGRREVGHGALAEKALSY 440

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-- 469
            +P    FPYT+R+ S ITES GSSSMA+VCG SLA+MDAG+P+S P+AG+AMGL+ D  
Sbjct: 441 TVPPVNDFPYTVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMGLLLDEE 500

Query: 470 ---GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
              G++ ++L+DI G ED LG MDFKVAG D GIT  Q+D+K  G++  ++  AL QAK 
Sbjct: 501 GGSGEEAVVLTDILGLEDALGTMDFKVAGNDKGITTFQLDIKCAGLTTALLGRALTQAKA 560

Query: 527 GRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK- 584
           GRLHIL EM K   +  R ++  F P   IM++ PDQI  +IG GGK+IR I+E      
Sbjct: 561 GRLHILGEMQKAQPDGPRKEISPFVPTATIMSVDPDQIGKIIGPGGKIIRQIIEDFSLDG 620

Query: 585 VNIDDDGTVKIA----SSSLAEIEAAREMIRSIT------------------DVPE---- 618
           +++++DG V I+    +S+ + ++   EM++ +T                   VP     
Sbjct: 621 MDVEEDGRVMISAFNSTSAASAVKYIEEMLKDVTLRGGGRGGGGGGGGRSSRGVPADFNA 680

Query: 619 ---VNKIYKG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   Y+  +VV +  FGAFV F    +GLVH+S+L   RV      + +   + VK+
Sbjct: 681 TAIIGTTYRDCEVVSIQPFGAFVEFAPGLEGLVHVSELDVNRVVTAEGFLADKPAIDVKV 740

Query: 675 LDFDDRGKIKLSMKVV--DQNTGK 696
           +  +D+GK++LS K V  D+  GK
Sbjct: 741 IGLNDKGKVRLSRKAVLMDERGGK 764


>gi|50954610|ref|YP_061898.1| polynucleotide phosphorylase/polyadenylase [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|81391079|sp|Q6AFQ2|PNP_LEIXX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50951092|gb|AAT88793.1| polyribonucleotide nucleotidyltransferase [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 761

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 280/731 (38%), Positives = 419/731 (57%), Gaps = 52/731 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGRIA+Q+ GAV A   E T++L+     +  KD  DFFPLTV+ +ER+YA
Sbjct: 18  FGARTVRFETGRIAQQAQGAVAAYLDEETMLLSATSASKHPKDNFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE Q+++ V+    +     +
Sbjct: 78  AGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSIAPDEFYDAL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING------QYVLNPRLDE-DQGSLDLFVSG-- 180
           ++ AASA+  +SGLPF GP+ G ++  I G      Q+V  P+  + ++   DL V G  
Sbjct: 138 AINAASASTQISGLPFSGPIAGVRLALIPGNGAHEDQWVAFPKASQLEEAVFDLIVVGRV 197

Query: 181 --TQD------AVLMVELEANQLSEDVVLDAIIFGHNE--------CKPVIE----AISK 220
              +D      A++MVE EA + S +++    +  + E         KP I     A + 
Sbjct: 198 LTNEDGTEGDVAIMMVEAEATEGSWNLIQGGAVKPNEEVVAQGLEAAKPFIRQLVGAQAA 257

Query: 221 LAKMCAKEPIVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
           LAK  AK   + D   F    +E    ++ +  ++L     I +K  R    D LK+++ 
Sbjct: 258 LAKQSAKA--IADYPVFLPYSQETYDSVAALAYDELVNVYQIADKVERQNADDALKERVK 315

Query: 277 SYFSSEHSSWN-EGEIVSVFEDIQAKVVRTVM----LDKKVRMDGRDSETVRDISAQVGL 331
           +  + +  +   + E ++ F      V + VM    L + VR+DGR    +R + A+V +
Sbjct: 316 AALAEKAQAGALDAEALTQFSAAYKSVSKVVMRGRVLREGVRIDGRGLTDIRPLDAEVQI 375

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391
           + R HGS++F RG+TQ + V TL   + EQ +DSLS   +  ++ HYNF P +TGE  R+
Sbjct: 376 IPRVHGSAVFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRYLHHYNFPPYSTGETGRV 435

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G+P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++A
Sbjct: 436 GSPKRREIGHGFLAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNA 495

Query: 452 GVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           GVP+  PVAGIAMGL+ D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D 
Sbjct: 496 GVPLRAPVAGIAMGLISDVIDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDT 555

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI  +++  AL+QAK  R  IL+ +   + ++  ++    PRV  + IP D+I  +I
Sbjct: 556 KLDGIPSSVLASALKQAKDARTTILSVLDAAI-DAPDEMAPTAPRVISVQIPVDKIGELI 614

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKG 625
           G  GK I  I ++TGA ++ID+DGTV I +      EAAR  +  I +   PEV + + G
Sbjct: 615 GPKGKTINAIQDETGADISIDEDGTVYIGAVDGPSAEAARAQVNVIANPTNPEVGEQFLG 674

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            VVK   FGAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRG
Sbjct: 675 TVVKNAAFGAFVSLLPGKDGLLHISEVRKLAGGKRVESVDDVLSIGQKILVEITKIDDRG 734

Query: 682 KIKLSMKVVDQ 692
           K+ L+  + D+
Sbjct: 735 KLSLAPVLADE 745


>gi|296273302|ref|YP_003655933.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097476|gb|ADG93426.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 725

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 291/726 (40%), Positives = 426/726 (58%), Gaps = 57/726 (7%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  G+    E  ++A+Q++G+VLA  G  V+LATVV +      +DF PLTV Y E+ 
Sbjct: 6   EFELNGKDEIFEFNKVAKQANGSVLAKCGNAVILATVVSEFDNPGSEDFTPLTVQYIEKA 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA  KIPGG+ +RES+P+E E L SR+IDRS+RPLF K Y   T + + V+  D +    
Sbjct: 66  YAAAKIPGGFFKRESKPSELETLTSRIIDRSLRPLFPKGYVYPTTITVMVLSADKDVDLQ 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVL 186
            +++ AASAAL  S +P +  V G ++  I+G+Y++NP + D    +LDL+V+G++D +L
Sbjct: 126 TLALNAASAALYTSNIPVKKSVAGVRIAKIDGEYIVNPNVTDMVNSTLDLYVAGSKDELL 185

Query: 187 MVELEANQLSEDVV---LDAI--IFGHNEC--KPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           M+E+ A   SED+V   ++A   I   NE   + ++EAIS +A++  KE        F  
Sbjct: 186 MIEMRAIS-SEDMVEVDIEAFSKIHKTNEMTEEELVEAIS-IAQIALKEANSTYETGFEN 243

Query: 240 LEEEMSQM------IKEDLRV---SCFIPE---------KYVRCKQIDDLKKKMVSYFSS 281
           + +E  ++      I EDL V   + ++ +         K  R  ++ DL KK+      
Sbjct: 244 VCKEKHEVELVEFTISEDLIVHVKNTYLHDVKDAVKKLAKSERATELKDLAKKIAK---D 300

Query: 282 EHSSWNEGEIVSVFEDI---QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
           E+ + NE    +V+E +   + +VVR ++++  VR DGR  +TVR IS    +L   H S
Sbjct: 301 EYCTSNEFPFENVYEAVSIVKKEVVRAMIVNDHVRADGRGLKTVRPISIDTNILPSAHSS 360

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
            LF RG+TQA+VV TL   +D Q  ++L+   T   +FM+HYNF   + GE   M    R
Sbjct: 361 CLFTRGETQALVVATLAGAKDGQMFETLNEKSTSMENFMVHYNFPGFSVGEAKPMFGVGR 420

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           RE+GHG L +RA+   + +   F  T+R+VSEI ES+GSSSMATVCG SLAL  AGVPIS
Sbjct: 421 RELGHGNLGKRALEATIDR--DFADTVRLVSEILESNGSSSMATVCGGSLALKAAGVPIS 478

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
             VAG+AMG+V +GD   +L+DI G EDH G MDFKVAG  +GITA+QMD+K+GGI  ++
Sbjct: 479 GLVAGVAMGMVVEGDKHCVLTDIMGLEDHDGDMDFKVAGPKTGITALQMDIKLGGIELSV 538

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QAK GR HIL  M +  +E  +      P +E  AI P +I  VIG  G  I+ 
Sbjct: 539 LKEALLQAKEGREHILTLMEEASAE--IIPSPALPLMEQFAIDPSKIMVVIGKAGSTIKE 596

Query: 577 IVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK---------IYK-- 624
           I+E+    +++D D G VK+A  +   +  A   I++I+D     K         +YK  
Sbjct: 597 IIEKFSVSIDLDRDSGNVKVAGDNKQNVLDACAHIKTISDNAPSRKQNEKIIFDSLYKEE 656

Query: 625 ----GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
               G V +++DFGAF+      +GL+HIS++S ERV   SDV+  GD V +K+L    R
Sbjct: 657 EVLEGIVERIVDFGAFMKLPKGGEGLLHISKISKERVKNVSDVLSVGDKVELKVLKV-SR 715

Query: 681 GKIKLS 686
            +I+L+
Sbjct: 716 DRIELA 721


>gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
 gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
          Length = 752

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/469 (49%), Positives = 326/469 (69%), Gaps = 2/469 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP R       LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +   ++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLI 469



 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 143/209 (68%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGTD+ ITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   +  +R +L
Sbjct: 521 GDMDFKVAGTDNCITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSAMGHARTEL 580

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
               PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+S   +  A
Sbjct: 581 SAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIASTSSEGMAEA 640

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV + SD VKE
Sbjct: 641 KRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVNQVSDYVKE 700

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           G  V VKLL  D++G+++LS+K      G
Sbjct: 701 GQLVRVKLLSTDEKGRMRLSIKAAKAEEG 729


>gi|156543904|ref|XP_001607068.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase
           [Nasonia vitripennis]
          Length = 765

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/705 (36%), Positives = 405/705 (57%), Gaps = 31/705 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + L TG+ AR +DG  +AT G+T V+ T V          F PL V+Y+++  A G+
Sbjct: 50  GKHMILSTGKYARLADGCAVATLGDTSVMVTTVSKSQSSGVNSFLPLVVDYRQKAAAAGR 109

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  + RRE   TE+EIL SR+IDRS+RPLF + Y  ETQV+ N++  D  + P V+S+ 
Sbjct: 110 IPTNFFRRELGHTEHEILTSRLIDRSLRPLFPQKYNYETQVVCNMLALDGNNDPDVLSIN 169

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVEL 190
            ASAAL +S +P+ GPV   +V  I+ + ++NP R +  Q SL+L V+ T Q+ V+M+E 
Sbjct: 170 GASAALAVSDIPWNGPVGAVRVGLIDNEVLINPTRREIQQSSLNLIVTATQQNLVVMLEG 229

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK- 249
            A+ +    +  A+  G  EC+ ++++I KL K   K    ++    ++L EE+ + IK 
Sbjct: 230 SADNILVPELRKALKAGVKECQIIVQSIQKLQKNFGKPKRTVEPP--AELPEEIVESIKS 287

Query: 250 ---EDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
              + LR   S +  +K  R   I++L+ ++++   + HS  + G  +  F +    + R
Sbjct: 288 LSEKKLRKIFSDYKHDKLSRDNAINNLRNEVLTTVKASHSELDSGLTLEAFSEFSKTLFR 347

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +++ +   R DGR    +R+I+ QV L +  HGS+LF RG TQ +  VTL + +    +D
Sbjct: 348 SLIFENNCRCDGRKYTDLRNITCQVDLFKPLHGSALFQRGQTQVLCTVTLDSPDSALKMD 407

Query: 365 SL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           ++    SG +  +F +HY F P AT E  R G   RRE+GHG LA R +  +LP+  ++P
Sbjct: 408 TMSMLSSGVKEKNFFLHYEFPPYATNETGRTGPVGRREMGHGALAERGLRAILPK--EYP 465

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DF 473
           +T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI+ P AG+A+GLV   D       D+
Sbjct: 466 FTIRLTSEVLESNGSSSMASVCGGSLALMDAGVPIAAPAAGVAIGLVTKYDKDTKHIKDY 525

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED+LG MDFK+AGT  G+TA+Q D+KI G+   I++ +L+QA   +  ILN
Sbjct: 526 KILTDILGIEDYLGDMDFKIAGTKKGVTALQADIKIPGLPLKIVMESLEQATEAKTQILN 585

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M++ +S+ R       P  E + +P      ++G+GG  I+ I  QTG  +N ++D   
Sbjct: 586 IMNEAISKPRTDKKNNMPVTETIEVPAHLRGKLLGIGGTNIKKIFLQTGVHINQEEDTKF 645

Query: 594 KIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647
            + + +   ++ A+E I  +T        E   IY  ++V++ D G  V  +      L+
Sbjct: 646 VLFAPNETAMDEAKETINQLTKQEREPTLEFGGIYTAKIVEMKDIGVMVTLYPSMPPALL 705

Query: 648 HISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
           H SQL   +V   S +  E G  + VK    D   G ++LS KV+
Sbjct: 706 HNSQLDQRKVNHPSALGFEVGQELQVKYFGRDPASGNMRLSRKVL 750


>gi|148273228|ref|YP_001222789.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|187610254|sp|A5CSN9|PNP_CLAM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147831158|emb|CAN02110.1| putative polyribonucleotide nucleotidyltransferase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 757

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/718 (38%), Positives = 413/718 (57%), Gaps = 43/718 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ E GR+A+Q+ GAV A   E T++L+     +  KD  DFFPLT++ +ER+Y
Sbjct: 17  KYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKDNFDFFPLTIDVEERSY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE QV+I V+    +     
Sbjct: 77  AAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDS 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------- 180
           +++ AASA+ MLSG+PF GP+ G ++  I  Q+V+ P+  +  +   D+ V+G       
Sbjct: 137 LAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDSE 196

Query: 181 -TQD-AVLMVELEANQLSEDVVL-------DAIIF-GHNECKPVIEAI---SKLAKMCAK 227
             +D A++MVE EA + + D++        +AI+  G    KP I+ +          A 
Sbjct: 197 GNEDVAIMMVEAEATEGAWDLIQGGATKPDEAIVAQGLEAAKPFIQQLVAAQASLAQQAA 256

Query: 228 EPIVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-- 281
           +P V D   F    +E    +S +  ++L       +K  R    D LK +     ++  
Sbjct: 257 KPTV-DYPVFLPYAQETYDAVSALALDELGTVYQTADKIERQDADDALKTRTKEAVAAKV 315

Query: 282 ---EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
              E       E  + ++ +   VVR  +L   VRMDGR    +R + A+V ++ R HGS
Sbjct: 316 EAGELPQSALTEFSAAYKSVTKTVVRGRILRDGVRMDGRGLADIRPLDAEVQVIPRVHGS 375

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           ++F RG+TQ + V TL   + EQ +DSLS   +  ++ HYNF P +TGE  R+G+P RRE
Sbjct: 376 AIFQRGETQILGVTTLNMLKMEQQIDSLSPITKKRYLHHYNFPPYSTGETGRVGSPKRRE 435

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           IGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  P
Sbjct: 436 IGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAP 495

Query: 459 VAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           VAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 496 VAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPT 555

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           +++  AL+QAK  R  IL  +++ + +   ++    PRV  + IP D+I  +IG  GK I
Sbjct: 556 SVLDGALKQAKEARTAILGVLNQAI-DGPDEMAPTAPRVISVNIPVDKIGELIGPKGKTI 614

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKVMD 632
             I ++TGA ++I++DGTV I +      +AAR  + +I +   PEV + + G VVK+  
Sbjct: 615 NAIQDETGADISIEEDGTVYIGAVDGPSADAARAQVNAIANPTNPEVGESFLGTVVKIAT 674

Query: 633 FGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           FGAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRGK+ L+
Sbjct: 675 FGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEITKIDDRGKLSLA 732


>gi|11514023|pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
           Enzyme
          Length = 757

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 273/708 (38%), Positives = 402/708 (56%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 34  FGTRTIRFETGRLARQAAGSAVAYLDDDTXVLSATTASKNPKDQLDFFPLTVDVEERXYA 93

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +   + +    VV
Sbjct: 94  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIXALNPDHLYDVV 153

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT--QD--- 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D  V+G   +D   
Sbjct: 154 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDXVVAGRVLEDGDV 213

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKM--------CAK 227
           A+  VE EA + +  +V D         +  G +  KP I+ + K              +
Sbjct: 214 AIXXVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 273

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E +S  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 274 FPVFLDYQD--DVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-R 330

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 331 EKEISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 390

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +  +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 391 ILGVTTLNXLRXEQQLDTLSPVTRKRYXHNYNFPPYSVGETGRVGSPKRREIGHGALAER 450

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+S  +VC S+ +L++AGVP+  PVAGIA GL+
Sbjct: 451 AIVPVLPTREEFPYAIRQVSEALGSNGSTSXGSVCASTXSLLNAGVPLKAPVAGIAXGLI 510

Query: 468 K---DGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               +G+  ++ L+DI G ED  G  DFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 511 SQEINGETHYVALTDILGAEDAFGDXDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 570

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+   + + ++  +     PR+  + IP D+I  VIG   + I  I E TGA
Sbjct: 571 ARDARLHILDVXXEAI-DTPDEXSPNAPRIITVKIPVDKIGEVIGPKRQXINQIQEDTGA 629

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +   PEV +   G VVK   FGAFV    
Sbjct: 630 EITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLP 689

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 690 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737


>gi|195449886|ref|XP_002072269.1| GK22421 [Drosophila willistoni]
 gi|194168354|gb|EDW83255.1| GK22421 [Drosophila willistoni]
          Length = 769

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 266/718 (37%), Positives = 415/718 (57%), Gaps = 34/718 (4%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +V +VE++++ GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 36  EVPSVEVKFSNGRNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++  D
Sbjct: 96  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKEYRNETQLVCNMLSMD 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V    G+ ++NP   E Q S LDL VS 
Sbjct: 156 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCEGEVLINPTRRELQSSQLDLVVSA 215

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           T Q+ V+M+E +   +    +L AI  G  E + +I+ I +L K   +    I++   S+
Sbjct: 216 TKQNLVVMLEGKGQVVLLQDLLKAIKQGTREAQFIIQEIERLQKSYGRHKRSIET--ISE 273

Query: 240 LEEEMSQMIK--EDLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           ++EE+ Q ++   ++R+         +K  R   ++D++  ++    S +       I  
Sbjct: 274 VDEELQQAVRSMSEMRLREIFQDAQHDKISRDNAVNDVRSNVIDKVWSSYPDTEPAVIGE 333

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F  +   + R ++ ++  R DGRD +++R+IS QV + +  HGS+LF RG TQ    V+
Sbjct: 334 EFNKVSRNIFRDLLFERTKRCDGRDFDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 393

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L + E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA RA
Sbjct: 394 LDSPESAMKLDSLAALESGGLKSKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERA 453

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP  + +P+T+R+ SE+ ES+GSSSMA+VCG SLAL+DAGVP+S P AG+A+GLV 
Sbjct: 454 LMPTLP--SDYPFTVRLTSEVLESNGSSSMASVCGGSLALLDAGVPVSAPAAGVAIGLVT 511

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED+LG MD KVAGT  G TA+Q D+KI GI   +++ +
Sbjct: 512 RYENNDTKHLQDYRILTDILGIEDYLGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 571

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   +  IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +
Sbjct: 572 LQKATDAKSKILDIMSEAIREPRKYRKECWPVSETLTVEPQQRSQLIGPSGLHLKRIYLE 631

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGA 635
           TG  +   D+G   + + S A ++ A+E+I        VP  E   IY  ++ ++ D G 
Sbjct: 632 TGTTLTAADEGQFTVFAPSQAAMDEAKELIEGYLVKERVPDLEFGGIYTAKITELRDTGV 691

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 692 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 749


>gi|88855410|ref|ZP_01130074.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
           PHSC20C1]
 gi|88815317|gb|EAR25175.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
           PHSC20C1]
          Length = 749

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 279/719 (38%), Positives = 426/719 (59%), Gaps = 45/719 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETGR+A+Q+ GAV A   E T++L+     +  ++G DFFPLTV+ +ER+Y
Sbjct: 17  KFGKRTVRFETGRLAQQAQGAVAAYLDEETMILSATSAGKHPREGFDFFPLTVDVEERSY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL+ R+IDR +RP F +  +NE Q++I V+    +     
Sbjct: 77  AAGKIPGSFFRREGRPSTEAILVCRLIDRPMRPTFVEGLRNEVQIVITVLSIAPDEFYDA 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG---TQD- 183
           +S+ AAS +  +SGLPF GP+ G ++  IN Q+V  P+  +      DL V+G   T D 
Sbjct: 137 LSINAASLSTQISGLPFYGPIAGIRLALINDQWVAFPKHSQLADAVFDLTVAGRMVTNDN 196

Query: 184 -----AVLMVELEANQLSEDVVL-------DAIIF-GHNECKPVIEAISK----LAKMCA 226
                A++MVE EA + S +++        +A++  G    KP ++ + K    +A   A
Sbjct: 197 GEEDIAIMMVEAEATENSWELIKAGATKPDEAVVAQGLEASKPFLKQLVKAQLEVANKAA 256

Query: 227 KEPIVIDSKDFSKLEEE----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS- 281
           K   V + + F    ++    +S++ + +LR    I +K  R    D+LK ++ +   S 
Sbjct: 257 KP--VAEFQLFPPYSDQAYNAVSEIAEAELRDVYKIADKIQRQTADDELKARVKAEVQSK 314

Query: 282 ----EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               E S+   G +   ++ +  KV+R  +L + +R+DGR    +R + A+V ++ R HG
Sbjct: 315 VDAEELSADVLGMVGGAYKAVSKKVMRQRVLTEGIRIDGRGLSDIRALDAEVEVIPRVHG 374

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S++F RG+TQ + V TL   + EQ +DSL+   +  +M HYNF P +TGE  R+G+P RR
Sbjct: 375 SAIFQRGETQILGVTTLNMLKMEQQIDSLAPVTKKRYMHHYNFPPYSTGETGRVGSPKRR 434

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  
Sbjct: 435 EIGHGFLAERAIAPVLPPREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRA 494

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGL+ D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ G+ 
Sbjct: 495 PVAGIAMGLISDEVDGVTRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLAGLP 554

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  AL+QAK  R  IL+ ++  + ++  ++    PRV  + IP D+I  +IG  GK 
Sbjct: 555 SSVLDGALKQAKEARTAILSVLNAAI-DAPDEMAPTAPRVISVQIPIDKIGELIGPKGKN 613

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--PEVNKIYKGQVVKVM 631
           I  I + TGA ++I+DDGTV I +      EAAR  + +I +   PEV + + G VVK+ 
Sbjct: 614 INQIQDDTGADISIEDDGTVYIGAVDGPSAEAARAAVNAIANPLNPEVGERFLGTVVKIA 673

Query: 632 DFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            FGAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRGK+ L+
Sbjct: 674 TFGAFVSLTPGKDGLLHISEVRKLAGGKRVENVEDVLAVGQKIQVEITKIDDRGKLSLA 732


>gi|261878984|ref|ZP_06005411.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
 gi|270334369|gb|EFA45155.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
          Length = 616

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 365/606 (60%), Gaps = 26/606 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G+
Sbjct: 13  GRTISIETGKVAKQADGAAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGR 72

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+ +RE +P++ EIL SR+IDR++RPLF   Y  E  V + ++  D    P  ++  
Sbjct: 73  FPGGFTKREGKPSDEEILTSRLIDRALRPLFPADYHCEVYVQVMLLSADGVDQPDALAGF 132

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AASAA+  S +PF+  +   +V  +NG++V+NP   + ++  +DL V  T+D ++MVE E
Sbjct: 133 AASAAMACSDIPFDYTISEVRVARVNGEFVINPTFQQMEEADMDLMVGATKDNIMMVEGE 192

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEMSQMI 248
             ++ E  ++ A+   H   KP+     +L+K      +  D+K   + E   +E+ Q I
Sbjct: 193 MKEVQETDLIAALKAAHEAIKPMCVLQEELSK-----ELGTDTKREYEDEVNDDELCQQI 247

Query: 249 KEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI-------VSVFE 296
           K++L    +       EK+ R +  D +    +  + + H+   E E+          +E
Sbjct: 248 KDELYQPVYDVNRQALEKHARHEAFDKIFADFIEKYDAAHTDLTEDELEEKHAEAARYYE 307

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+    +R  +LD+ +R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT
Sbjct: 308 DVMRDAMRRCILDEGLRLDGRGTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGT 367

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DE+ VD++       F++HYNF P +TGE        RREIGHG LA R I   +P+ 
Sbjct: 368 KLDEKLVDNVLNRGYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGIKDQIPE- 426

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFI 474
             FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPVAGIAMGL+K+   D + 
Sbjct: 427 -DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVAGIAMGLIKNPGEDKYA 485

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK  R HI+ E
Sbjct: 486 ILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKDAREHIMGE 545

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTV 593
           M K LSE R ++    PR+  + IP + I  VIG GGK+I+ + E TG+ + ID+ DG  
Sbjct: 546 MMKTLSEPRKEMKPQVPRIVAIEIPKEFIGAVIGPGGKIIQQLQEDTGSTITIDEVDGVG 605

Query: 594 KIASSS 599
           K+  S+
Sbjct: 606 KVQVSA 611


>gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
 gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
          Length = 693

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/687 (37%), Positives = 416/687 (60%), Gaps = 37/687 (5%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +A+Q+ G+VL   G TV+LA+V  D    +G DF PL+V Y E++YA GKIPGG+++RE 
Sbjct: 20  VAKQASGSVLYERGGTVILASVAIDDKDVEG-DFLPLSVQYIEKSYATGKIPGGFIKREG 78

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +P E E L SR+IDR++RPLF K Y+  T + + V+ +D ES   V ++ AA+ AL+LS 
Sbjct: 79  KPGEFETLTSRIIDRTLRPLFPKHYRKTTHISVFVLSYDGESDLQVCALNAAANALLLSA 138

Query: 143 LPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEANQ-----LS 196
            PF  P    ++  I+G +VLNP R +    +LDL++SG+   +LM+E++        ++
Sbjct: 139 APFCVPTAAVRIGRIDGVFVLNPSRSELANSALDLYISGSFGDLLMIEMKGGSTKESGIN 198

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMC----AKEPIVIDSKDFSKLEEEMSQMIKEDL 252
           E+ +L+AI       K  I+ +S L +       K P+ +  K     +EE+  ++K++ 
Sbjct: 199 EEELLEAITL----AKAHIQELSSLYEQNIAPHKKAPLALPEK-IELFDEEIDTLLKQEY 253

Query: 253 --RVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
             R    + +  K  R K ++ L +++   + +    W+  ++       + +V+R  +L
Sbjct: 254 FSRTQEILNQMSKSERNKDLESLGEEIYQKYQN-FKPWSLEQVQYTLWQYKKQVMRNQVL 312

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++ +R DGR +  VR IS +  +L   HGS LF RG TQ++VV TLG+  D Q  ++L+ 
Sbjct: 313 ERGIRADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLND 372

Query: 369 T--QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +  Q+ +F  HYNF   + GE   +G+  RRE+GHG LA++A+   + +  +   TLR+V
Sbjct: 373 SIPQKENFTFHYNFPGFSVGEALMIGSVGRRELGHGNLAKKALEDSIIEKDR---TLRLV 429

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEI ES+GSSSMA+VCG SLA+   G+  S  VAG+AMGL+K+G ++ +L+DI G EDH 
Sbjct: 430 SEILESNGSSSMASVCGGSLAICACGMESSGLVAGVAMGLIKEGSEYAVLTDIMGLEDHD 489

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAG ++ ITAMQMD+K+GG+   I+  AL QA+  RLHIL    +++ E+R ++
Sbjct: 490 GDMDFKVAGNENFITAMQMDIKLGGLELGILKEALYQARDARLHIL----QIMQEARARI 545

Query: 547 ---GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAE 602
               +  P+VE   +PP +I  +IG GGK I+ I+E+ G  +++D + G VK+ +++   
Sbjct: 546 VVNHDIIPKVETFCVPPSKIIEIIGSGGKTIKEIIERFGVSIDLDREKGEVKVFATNAKT 605

Query: 603 IEAAREMIRSITDVPEV--NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           ++  +  I  I        N+I+ G V K++DFG FV      DGL+HIS+ + ++  K+
Sbjct: 606 LQDCKNYILQIIGSQGYVENEIFLGVVKKIVDFGVFVSLPRGGDGLLHISKFAQDKSKKS 665

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           SD  +EG  +  K+L F ++GK+ L +
Sbjct: 666 SDYFQEGQKISCKILGF-NKGKVDLDL 691


>gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
 gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 691

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/684 (34%), Positives = 404/684 (59%), Gaps = 22/684 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ + +ETG++A Q++G  +   G+T ++AT+V  +  K+G +F PL ++Y+E   A GK
Sbjct: 15  GQIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLPLIIDYKENYSAGGK 74

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE RP++ E+L  R+IDR +RPLF + +  E Q+II ++ +D    P  ++ +
Sbjct: 75  IPGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLLSYDRNVLPDGLAGL 134

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
            ASAA+ +SG+PF+GPV   ++      +++NP +   + S ++L + GT++++LM+E E
Sbjct: 135 VASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDINLIIGGTKNSILMIEGE 194

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEA---ISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
             ++SE+ ++  I   H   K  I A   + K  K+      V ++ +F  L+ ++  + 
Sbjct: 195 MKEISENEIIYFIKIAHFFIKLQITAQINLIKNLKIKRNNLPVFNNLNFIYLKNKIKYIF 254

Query: 249 KEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
            E  ++ C   +    +R +Q++ L  K+ +YF  ++   NE E   +FE ++ +++R +
Sbjct: 255 YE--KIYCLYKQASSIIRFQQMEILLLKINNYFLYDNIILNEDEQNYIFEILKKEILREI 312

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L +  R+DGR  + +R I +Q   L   HGS++F RG+TQA+  VTLG+  D   +D++
Sbjct: 313 ILKENHRLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNV 372

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
               +  F +HYNF P +TGE+  +   SRREIGHG LA+RA+  ++P   + PYT+R+V
Sbjct: 373 ILQDQQKFYLHYNFPPFSTGEIKLLKGISRREIGHGNLAQRALKNIIP--FKTPYTIRVV 430

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484
           S+I ES+GSSSMATVC S+LALMDAG+PI +PV+GI+MGL+ +   D+ IILSDI GDED
Sbjct: 431 SDILESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIINFLTDEAIILSDILGDED 490

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           ++G MDFK+ GT  GITA QMD+   G +  +++ ++ +AK   L ++ ++   +   R 
Sbjct: 491 NIGDMDFKMTGTKFGITACQMDINFPGSNYEMLLNSIFKAKNCLLFLIKKILNTIQYPRF 550

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLA 601
              E +P++    I    I  VIG GGK+I+ I   T   + I+++   G ++I   +  
Sbjct: 551 SFKENSPKIFYFEIKKKLIGTVIGSGGKIIQEIKTSTNTNLKIEEEENLGIIEIYGKTDK 610

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +I+ A   I+++   P+  K+YK ++  + +    +     +        L         
Sbjct: 611 QIKNAILKIKNLIFFPKKEKLYKVKIKSIKNSELIIILPSGQT-----MDLKKSENLNLY 665

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKL 685
             +++GD  W+K+   +  GKI  
Sbjct: 666 SFLRKGD--WIKIKSVNQNGKINF 687


>gi|195112939|ref|XP_002001029.1| GI10566 [Drosophila mojavensis]
 gi|193917623|gb|EDW16490.1| GI10566 [Drosophila mojavensis]
          Length = 770

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 263/718 (36%), Positives = 410/718 (57%), Gaps = 34/718 (4%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           DV +VE+ ++ GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 36  DVPSVEVSFSNGRKMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++  D
Sbjct: 96  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMD 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 156 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLVVSA 215

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           T Q+ V+M+E + N +    +L AI  G  E + +I  I +L K   ++   +D  +  +
Sbjct: 216 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKRDVD--ELPE 273

Query: 240 LEEEMSQMIKE--DLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            + E+ Q +K   ++R+         +K  R   +++++  ++    S +   +   I  
Sbjct: 274 PQAELVQAVKSMCEMRLREIFQDASHDKISRDTAVNEVRANVIDKVWSSYPDLDPAAIGE 333

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F +   ++ R ++ +   R DGRD +++R I+ QV + +  HGS+LF RG TQ    V+
Sbjct: 334 EFNNACREIFRELIFESNRRCDGRDYDSLRKINCQVDMYKPLHGSALFQRGQTQVFCTVS 393

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L + E    +D+L+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R+
Sbjct: 394 LDSPESAMKLDTLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERS 453

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI+ P AG+A+GLV 
Sbjct: 454 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPITAPAAGVAIGLVT 511

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +
Sbjct: 512 KYENNDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 571

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   +  IL+ M + + E R    +  P  E + + P Q   +IG  G  ++ I  +
Sbjct: 572 LQKATDAKSKILDIMGETIREPRKYRKDCWPVSENLVVEPHQRSQLIGPSGLHMKRIYLE 631

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD---VP--EVNKIYKGQVVKVMDFGA 635
           TG  +   DD    + + S A ++ A+EMI        VP  E   IY   + ++ D G 
Sbjct: 632 TGTTLTPSDDSNFTVFAPSQAAMDEAKEMIEGYMHKERVPDLEFGGIYTATITELRDTGV 691

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  + G    L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 692 MVILYPGMPPALLHNSQLDQRKIAHPSALGLEVGQEIQVKYFGRDPVSGFMRLSRKVL 749


>gi|237753403|ref|ZP_04583883.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375670|gb|EEO25761.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 736

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 266/717 (37%), Positives = 411/717 (57%), Gaps = 56/717 (7%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +A+Q+ G+V    G  V+LAT+  D      +DF PLTV Y E+ YA GK PGGY++RE+
Sbjct: 20  VAKQASGSVYYKSGNNVLLATLAVDCDCIVEEDFLPLTVQYIEKAYAAGKFPGGYIKREA 79

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +P + E L +R++DRS+RPLF K Y   TQ+ I V+  D ++   ++++ AASAAL  S 
Sbjct: 80  KPGDFETLTARIVDRSLRPLFPKDYCYPTQITIMVLSADNDADLQLLALNAASAALYTSE 139

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE---------- 191
           +P    V G ++  I  ++V+NP L E +Q +LDLFVSG  + +LM+E+           
Sbjct: 140 IPLNFAVNGVRIGRIGNEFVVNPSLKEMEQSTLDLFVSGVNEDLLMIEMRTFGGVDIQTP 199

Query: 192 -------------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
                              AN+L+E  ++ A+           + + +  K C KEP+ +
Sbjct: 200 SNPLSLVTTLMEDKKAEFSANELTEIELMQALEIAKTHISKKSKLVEEHFKACIKEPLEL 259

Query: 233 DSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--- 285
                + + + + + IK+     LR       K  R  ++    K++V  ++  +     
Sbjct: 260 TQARKNYICQSVQEFIKQGYLGGLREILAELSKTERHSRLKAFAKQIVQDYAKSNPQDIE 319

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
           + E  +       +  ++R ++L + +R DGR  + VR IS +  +L + H S LF RG 
Sbjct: 320 FLEQRVNETLNLQKRAMLRAMILQEGIRADGRGLKEVRPISIETNILPKAHSSVLFTRGQ 379

Query: 346 TQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           TQA+VV TLG   D Q  + L+  GT +  FM+HYNF P + GE   +GA  RRE+GHG 
Sbjct: 380 TQALVVCTLGGEMDAQSYELLTDKGTSKERFMVHYNFPPFSVGEAIPIGATGRRELGHGN 439

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA+RA+   +    Q   T+R+VSEI ES+GSSSMA+VCG SLAL  A +  +  +AG+A
Sbjct: 440 LAKRALECSVINGDQ--KTIRLVSEILESNGSSSMASVCGGSLALAAADIECTSLIAGVA 497

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           MGLV +G+ + +L+DI G EDH G MDFKVAG+ SGITA+QMD+K+GG+S  I+  AL Q
Sbjct: 498 MGLVCEGEKYAVLTDIMGLEDHDGDMDFKVAGSKSGITALQMDIKLGGLSTEILECALLQ 557

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           AK  R HIL  M    ++ ++ L     P  +  AI P +I  VIG  GK I+ I+E+  
Sbjct: 558 AKEARFHILEIMES--AKEKIVLNTVALPSSQTFAIHPSKIVEVIGQAGKTIKEIIEKFE 615

Query: 583 AKVNID-DDGTVKIASSSLAEIEAAREMIRSIT----DVPEVNKIYK------GQVVKVM 631
             ++++ D+G VK++  +  +++AA+E I  IT    D P + ++YK      G+V KV+
Sbjct: 616 VAIDLNRDNGEVKVSGGNKEKVDAAKEYIIGITSASSDKPSIAELYKVGDVYEGRVKKVV 675

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           DFGAFV      DGL+HIS++++ R A+ SD +  GD + V++L   ++ K++L ++
Sbjct: 676 DFGAFVELPHNYDGLLHISKITSSRGAQASDYLSVGDLLRVEVLSL-NKNKVELGLQ 731


>gi|195053730|ref|XP_001993779.1| GH21615 [Drosophila grimshawi]
 gi|193895649|gb|EDV94515.1| GH21615 [Drosophila grimshawi]
          Length = 760

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/718 (36%), Positives = 409/718 (56%), Gaps = 34/718 (4%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           D  TVE++++ GR + L +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 29  DAPTVEVQFSNGRNMTLSSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVV 88

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+++  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+NETQ++ N++  D
Sbjct: 89  DYRQKNAASGRIPMNFMRRELGPSEREILSARLIDRSLRPLFPKDYRNETQLVCNMLAMD 148

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP ++++ AAS AL +S +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 149 AVHSPDILAINAASMALSVSDIPWHGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSA 208

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           T Q+ V+M+E + N +    +L AI  G  E + +I  I +L K   ++   +D+    +
Sbjct: 209 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKSYGRQKRDVDA--LPE 266

Query: 240 LEEEMSQMIKE--DLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            E E+ Q ++   ++R+         +K  R   +++++  ++    S +       I  
Sbjct: 267 SEPELVQAVRSMCEMRLREIFQDAQHDKISRDTAVNEVRANVLDKVWSSYPDAEPATIGE 326

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F      + R ++ +   R DGRD +++R+I+ QV + +  HGS+LF RG TQ    V+
Sbjct: 327 EFNKACRSIFRELIFESNRRCDGRDYDSLRNINCQVDMYKPLHGSALFQRGQTQVFCTVS 386

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L ++E    +D+L+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R 
Sbjct: 387 LDSQESAMKLDTLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERG 446

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI  P AG+A+GLV 
Sbjct: 447 LLPTLPH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPIIAPAAGVAIGLVT 504

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +
Sbjct: 505 KYENEDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 564

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   +  IL+ M+  + E R    E  P  E +++ P Q   +IG  G  ++ I  +
Sbjct: 565 LQKATDAKAKILDIMADTIREPRTYRKECWPVSETLSVEPHQRAQLIGPSGLHMKRIYLE 624

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635
           TG  +   DD +  I + S A ++ A+E+I        VP  E   IY  ++ ++ D G 
Sbjct: 625 TGTTLTAADDNSFTIFAPSQAALDEAKELIDGYMLKERVPQLEFGGIYTAKITELRDTGV 684

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 685 MVILYPSMPPALLHNSQLDQRKIAHPSALGLEVGQELQVKYFGRDPVSGFMRLSRKVL 742


>gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
 gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
          Length = 638

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/586 (43%), Positives = 359/586 (61%), Gaps = 26/586 (4%)

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAV 185
           P + +++AASAAL LSG+PF GPVVG  V+    +   N  + E +  L+LFV+ T+++V
Sbjct: 14  PEIPALIAASAALQLSGIPFSGPVVGVDVNMHGSETTCN-EIRETEDGLELFVACTEESV 72

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-MCAKEPIVIDSKDFSKLEEEM 244
           +MVE EAN+ SE+ V+ A+       KP+   I++  K +   +P+ +   +     EE+
Sbjct: 73  VMVEAEANEASEEEVVHALSEALKSAKPIFSFINEFVKSVTTVKPVGVLYDN-----EEL 127

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQI-------DDLKKKMVSYFSS-EHSSWNEGEIVSVFE 296
                E +R +C    + V  ++I       + L +   + F+  E   + E EI+    
Sbjct: 128 C----EKVRAACNAQLESVYNERISSKEERHNKLNQVYANTFARLEDDGYTESEILFFIR 183

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR  +L++ +R DGR    +R IS  +  L  THGS+LF RG TQ++VV TLG+
Sbjct: 184 KLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGS 243

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D + G +R   ++HYNFLP A GEV  + AP RREIGHGRLA +A+  VLP  
Sbjct: 244 YQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKAVKAVLPGK 303

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYTLR+VSEITESDGSSSMATVCGSSLALMD GVPI+K VAGIAMGL+ DG    IL
Sbjct: 304 EVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGARSAIL 363

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDISGDED LG MDFKVAGT +GI A+QMDMK+ GIS   +  AL QA  GRLHIL +M 
Sbjct: 364 SDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRNALNQALAGRLHILEKME 423

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +++ R  L +  P++    I  D +  VIG GGK IRGI   T  K++ID +  V I 
Sbjct: 424 HAIAKPREGLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSTKIDIDQNNYVYIM 483

Query: 597 S---SSLAEIEAAREMIRSITDVP----EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +    +L E +   +M    +D      ++ ++Y+G++V ++DFG FV     ++GLVHI
Sbjct: 484 ADTEEALMEAKTRVDMASGTSDSNVSQLKIGELYEGKIVSIVDFGLFVVLPNKQEGLVHI 543

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S++S  RV        EG +V V++ D    GKIKL+M++ +   G
Sbjct: 544 SEISRNRVNDIRAEHTEGQSVTVRIKDIGSDGKIKLTMRIDEDRVG 589


>gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
 gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
          Length = 725

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 265/713 (37%), Positives = 416/713 (58%), Gaps = 53/713 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V+I+  G+  K    ++ARQ+D ++    G TV+LAT+ Y+      +DF PL V Y ER
Sbjct: 5   VDIKINGKEQKFILNKVARQADSSIWWQEGNTVMLATLTYNPDEVIEEDFVPLVVQYVER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIP G+++RE +P + E L +R++DRS+RPLF K +  +T + I  +  D +S  
Sbjct: 65  AYAVGKIPAGFVKREQKPGDFETLTARIVDRSLRPLFPKNFGYDTIITIMALSADEDSDL 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V +M AA+A + +S LPF   V G ++  I+G+ + NP L + ++G  +LFV+GT+D +
Sbjct: 125 QVAAMNAAAACMYMSSLPFAKMVHGVRITRIDGEIIFNPTLSQLEKGDFNLFVTGTKDEL 184

Query: 186 LMVELEANQLSE-------DVVLDA-------IIFGHNECKP--VIEAISKLAKMCAKEP 229
           LM+E  +    E       D++LD        I +  NE     +IE + K  +   +  
Sbjct: 185 LMIEYASQGQEEVEIIPVEDIMLDGVPVENTIIKYKTNEISEDELIEILKKAQEKIKEGA 244

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------ 283
              +S   + ++E++  + ++++ ++ +I  K ++ K ID+L++ +     SE       
Sbjct: 245 ETYESALKNFVKEKIEFVERKEVDLTPYI--KLIKEKYIDELREIIKHLSKSERDYLLKE 302

Query: 284 ------SSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
                  + NE +    I+   ++++ ++VR ++L + +R DGR  + +R IS +  +L 
Sbjct: 303 FARKIAKTLNEEDNFEAILKAVKEVKREIVRGMILYEGIRADGRKLDEIRPISIETNVLP 362

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN--DFMMHYNFLPCATGEVSRM 391
           R HGS LF RG TQA+ V T G   D Q   +L+  +     FM+HYNF   A GE  R+
Sbjct: 363 RAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEEKLEKFMLHYNFPAFAVGEAVRL 422

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G PSRRE+GHG LA+RAI P+L    +F  T+R+VSEI ES+GSSSMAT+C SS+AL  A
Sbjct: 423 GPPSRRELGHGNLAKRAIEPLL--DPEFDETVRVVSEILESNGSSSMATICASSIALKAA 480

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
            VP+ K  AGIAMGLV +G+ + IL+DI G EDH G MDFKVAGT  GITAMQMD+K+GG
Sbjct: 481 KVPLLKLAAGIAMGLVSEGEKYAILTDIMGLEDHDGDMDFKVAGTWDGITAMQMDIKLGG 540

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I+ +I+  AL QA+  R  IL +M   +   +    +  P+     + PD+I ++IG  G
Sbjct: 541 IALDILKEALYQAREARAFILEKMENAVENIKYN-EDVLPKSLSFKVEPDRIIDIIGTAG 599

Query: 572 KVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT---DVP-----EVNKI 622
           K ++ I+ + G  +++D + G VKI   S  +++AA++ I ++    D P     E+  I
Sbjct: 600 KTVKEIIAKFGITIDLDRETGKVKIFGDSHEQMQAAKDYILNVICKEDTPKIPEFEIGSI 659

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +G + + + FG FV      +GL+HIS+L+     K+ D  + GD + VK+L
Sbjct: 660 LEGVIKRKVPFGLFVELAPDVEGLLHISKLN----GKSLDDFEIGDKIKVKVL 708


>gi|125773375|ref|XP_001357946.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
 gi|195165852|ref|XP_002023752.1| GL27239 [Drosophila persimilis]
 gi|54637680|gb|EAL27082.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
 gi|194105912|gb|EDW27955.1| GL27239 [Drosophila persimilis]
          Length = 769

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/717 (36%), Positives = 413/717 (57%), Gaps = 32/717 (4%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +V +VE++++ GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 36  EVPSVEVKFSNGRNMSISSGKLARFANGTAVCQMGDTAVMVTAVAKPKPTPGQNFMPLVV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+ ETQ++ N++  D
Sbjct: 96  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFNKDYRTETQLVCNMLAMD 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP ++++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 156 AVHSPDILAINAASMALSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLVVSA 215

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-- 237
           T Q+ V+M+E + N +    +L AI  G  E + +I+ I +L K   ++   ++S +   
Sbjct: 216 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIQEIERLQKAYGRKKREVESPNRVD 275

Query: 238 SKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L+E +  M +  LR        +K  R   +++++  ++    S +     G I   F
Sbjct: 276 PELQEAVRSMCEMRLREIFQDANHDKISRDNAVNEVRSNVIDKVWSSYPDTEPGVIGEEF 335

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ ++  R DGRD +T+R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 336 NQTCRSIFRELIFERNYRCDGRDYDTLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 395

Query: 356 TREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 396 SPESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERSLL 455

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--- 467
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV   
Sbjct: 456 PTLPH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKY 513

Query: 468 -----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
                K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+K+ GI   +++ +LQ
Sbjct: 514 ENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKVPGIPLKVVMESLQ 573

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ M++ + E R    +  P  E +++ P Q   +IG  G  ++ I  +TG
Sbjct: 574 KATDAKSKILDIMAEAIREPRKYPKDSWPVSETISVEPHQRSQLIGPSGLHMKRIYLETG 633

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRS------ITDVPEVNKIYKGQVVKVMDFGAF 636
           A +   D+    + + S A ++ A+E+I        I D+ E   IY  +V ++ D G  
Sbjct: 634 ATLTAADESHFAVFAPSQAAMDEAKELIEGYMVKERIPDL-EFGGIYTAKVTELRDTGVM 692

Query: 637 V-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
           V  +      L+H SQL   ++   S +  E G  + VK    D   G ++LS KV+
Sbjct: 693 VILYPSMPPALLHNSQLDQRKIGHPSALGLEVGQDIQVKYFGRDPVSGFMRLSRKVL 749


>gi|257460281|ref|ZP_05625384.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
           RM3268]
 gi|257442346|gb|EEV17486.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
           RM3268]
          Length = 704

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 265/706 (37%), Positives = 402/706 (56%), Gaps = 53/706 (7%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +IE  G     +  ++A+Q+ GA L     TVVLATV  + + +  +DF PLTV Y E+ 
Sbjct: 4   KIEVNGNTEIFDINKVAKQAAGAALLRVKNTVVLATVAREET-QVQEDFLPLTVQYIEKM 62

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGGY++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E    
Sbjct: 63  YAAGRIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVYVLSADPEVDLQ 122

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           VV++ AASAAL LS +P + PV G ++ Y NG ++LNP     + S LDL+V+G  D +L
Sbjct: 123 VVALNAASAALYLSDIPIKAPVCGVRIGYENGNFILNPSNSTLKASVLDLYVAGVGDELL 182

Query: 187 MVELEA-----------NQLSEDVVLDAIIF-------GHNECKPVIEAISKLAKMCAKE 228
           M+E+ +           N+ SED+++DAI F       G N  +     + K       +
Sbjct: 183 MIEMRSLPQINGDAQQMNEFSEDLMVDAIDFAAKAISAGSNAYEEAFLPLKKPDASLEYK 242

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P  I+ +D +     +    K+ ++ +     K  R  +++ +  ++++   +  + W++
Sbjct: 243 P-EIEDEDIADF---IDANYKDAVKAAINQMAKSERATELNKIVDQILATEVAAQNEWSK 298

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I SV    +  ++RT +++ + R DGR  + VR IS +  +L   HGS LF RG TQA
Sbjct: 299 EVISSVIGKYKRGIIRTQIIEDRRRADGRALDEVRPISIETNILPCAHGSCLFTRGQTQA 358

Query: 349 IVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           +VV TLG   D Q  DSL+  +     FM +YNF     GE S + +P RRE+GHG LA+
Sbjct: 359 LVVTTLGGDSDAQLSDSLTQLEPISERFMFNYNFPGFCVGEASPLKSPGRRELGHGNLAK 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA++P +   +  P ++R+VSEI ES+GSSSMA+VCG +L+L  AGVP  K VAG+AMGL
Sbjct: 419 RALYPSINLNS--PQSIRVVSEILESNGSSSMASVCGGALSLRAAGVPTLKLVAGVAMGL 476

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           + +G+   +L+DI G EDH G MDFKVAGT  GITA+QMD+K+GGIS  ++  AL QA++
Sbjct: 477 IFEGEKHAVLTDIMGLEDHDGDMDFKVAGTYEGITALQMDIKLGGISLEVLKEALAQARQ 536

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R HIL  M +  +   +   +  P++EI  +   +I ++IG GGKVI+ I E  G  ++
Sbjct: 537 ARAHILGLMEQADAAIVINR-DVLPKLEIFNVEASKIPDIIGQGGKVIKEITESFGVNID 595

Query: 587 ID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------EVNKIYKGQVVKV 630
           +D + G VKI  +  + +  A+E I SI                   ++ + + G V  V
Sbjct: 596 LDREKGEVKIQGAKASGVSGAKEKILSIVSNSRDFRKPRGERKEVKFQIGEEFDGVVQSV 655

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           +DFG F+      DGL+    ++T          K GD V V++ D
Sbjct: 656 LDFGTFISLRDGVDGLLRAKFITTP--------YKAGDVVRVRVTD 693


>gi|194741988|ref|XP_001953491.1| GF17196 [Drosophila ananassae]
 gi|190626528|gb|EDV42052.1| GF17196 [Drosophila ananassae]
          Length = 771

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/713 (36%), Positives = 406/713 (56%), Gaps = 30/713 (4%)

Query: 6   TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +VE+ ++ GR +   +GR+AR ++G+ +   G+T V+ T V       GQ F PL V+Y+
Sbjct: 41  SVEVNFSNGRNMTFSSGRLARFANGSSVCQMGDTAVMVTAVAKAKPTPGQGFMPLVVDYR 100

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLFSK Y+ ETQ++ N++  D   
Sbjct: 101 LKNAASGRIPMNFMRREMGPSEKEILSARLIDRSLRPLFSKDYRTETQLVCNMLAMDAVH 160

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-Q 182
           SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T Q
Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSATKQ 220

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KL 240
           + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   +++   +  +L
Sbjct: 221 NLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEAPTATDPEL 280

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           E+ +  M +  LR        +K  R   +++++  ++    S        +I  +F   
Sbjct: 281 EQAVRSMCEMRLREIFQDAHHDKISRDNAVNEVRSNVIDKVWSSFPDTEPSQIGELFNQT 340

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             ++ R ++ +++ R DGR  + +R+IS QV L +  HGS+LF RG TQ    V+L + E
Sbjct: 341 SREIFRELIFEREQRCDGRSYDQLRNISCQVDLYKPLHGSALFQRGQTQVFCTVSLDSPE 400

Query: 359 DEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R + P L
Sbjct: 401 SAMKLDSLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERGLLPTL 460

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------ 467
           P    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP++ P AG+A+GLV      
Sbjct: 461 PH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYEND 518

Query: 468 --KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
             K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A 
Sbjct: 519 DTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKAT 578

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL+ M + + E R    +  P  E + + P Q   +IG  G  ++ I  +TGA +
Sbjct: 579 DAKSKILDIMGEAIREPRKYRKDSWPVSETLTVEPHQRAQLIGPSGLHMKRIYLETGATL 638

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV-HF 639
              D+    + + S A ++ A+E+I        VP  E   IY  ++ ++ D G  V  +
Sbjct: 639 TAADESNFSVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILY 698

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
                 L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 699 PSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751


>gi|195575304|ref|XP_002105619.1| GD16436 [Drosophila simulans]
 gi|194201546|gb|EDX15122.1| GD16436 [Drosophila simulans]
          Length = 771

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/715 (36%), Positives = 404/715 (56%), Gaps = 34/715 (4%)

Query: 6   TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +VE+ ++ GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V+Y+
Sbjct: 41  SVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVVDYR 100

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D   
Sbjct: 101 LKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 160

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-Q 182
           SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T Q
Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQ 220

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----SKDF 237
           + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++       + 
Sbjct: 221 NLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPEL 280

Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            K    M +M ++E  + S    +K  R   +++++  ++    S         I   F 
Sbjct: 281 GKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFN 338

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
                + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L +
Sbjct: 339 QTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDS 398

Query: 357 REDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P
Sbjct: 399 QESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLLP 458

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---- 467
            LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV    
Sbjct: 459 TLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFE 516

Query: 468 ----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               K  +D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+
Sbjct: 517 NDDTKHLEDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQK 576

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A   +  IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG 
Sbjct: 577 ATDAKSKILDIMSEAIREPRKYRKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGT 636

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV- 637
            +   D+    + + S A ++ A+E+I        VP  E   IY  ++ ++ D G  V 
Sbjct: 637 SLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVI 696

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 697 LYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751


>gi|54650534|gb|AAV36846.1| RH44882p [Drosophila melanogaster]
          Length = 771

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/718 (36%), Positives = 405/718 (56%), Gaps = 34/718 (4%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ ++ GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234
           T Q+ V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++      
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277

Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +  K    M +M ++E  + S    +K  R   +++++  ++    S         I  
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 335

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F      + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+
Sbjct: 336 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 395

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L ++E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R+
Sbjct: 396 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 455

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV 
Sbjct: 456 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 513

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +
Sbjct: 514 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 573

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   + +IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +
Sbjct: 574 LQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 633

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635
           TG  +   D+    + + S A ++ A+E+I        VP  E   IY  ++ ++ D G 
Sbjct: 634 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 693

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 694 MVILYPSMPPALLHNSQLDQRKIAHPSTLNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751


>gi|24651641|ref|NP_651867.2| CG11337, isoform A [Drosophila melanogaster]
 gi|24651643|ref|NP_733429.1| CG11337, isoform B [Drosophila melanogaster]
 gi|281362905|ref|NP_001163783.1| CG11337, isoform D [Drosophila melanogaster]
 gi|23172770|gb|AAF57151.2| CG11337, isoform A [Drosophila melanogaster]
 gi|23172771|gb|AAN14273.1| CG11337, isoform B [Drosophila melanogaster]
 gi|272477256|gb|ACZ95076.1| CG11337, isoform D [Drosophila melanogaster]
          Length = 771

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/718 (36%), Positives = 405/718 (56%), Gaps = 34/718 (4%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ ++ GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234
           T Q+ V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++      
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277

Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +  K    M +M ++E  + S    +K  R   +++++  ++    S         I  
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 335

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F      + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+
Sbjct: 336 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 395

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L ++E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R+
Sbjct: 396 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 455

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV 
Sbjct: 456 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 513

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +
Sbjct: 514 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 573

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   + +IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +
Sbjct: 574 LQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 633

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635
           TG  +   D+    + + S A ++ A+E+I        VP  E   IY  ++ ++ D G 
Sbjct: 634 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 693

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 694 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751


>gi|195391142|ref|XP_002054222.1| GJ22920 [Drosophila virilis]
 gi|194152308|gb|EDW67742.1| GJ22920 [Drosophila virilis]
          Length = 769

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/717 (36%), Positives = 407/717 (56%), Gaps = 34/717 (4%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           V  VE+ ++ GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V+
Sbjct: 36  VPAVEVSFSNGRNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVVD 95

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++  D 
Sbjct: 96  YRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDA 155

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
             SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T
Sbjct: 156 VHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLNDGEVLINPTRRELQSSQLDLVVSAT 215

Query: 182 -QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            Q+ V+M+E + N +    +L AI  G  E + +I  I +L K   +    +D+    + 
Sbjct: 216 KQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKAYGRHKREVDA--LPEA 273

Query: 241 EEEMSQMIKE--DLRVSCFIP----EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
             E+ Q +K   ++R+         +K  R   +++++  ++    S +   +   I   
Sbjct: 274 NSELVQAVKSMCEMRLREIFQDAQHDKISRDTAVNEVRSNVIDKVWSSYPDTDPAAIGEE 333

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F      + R ++ +   R DGRD +++R+IS QV + +  HGS+LF RG TQ    V+L
Sbjct: 334 FNKACRDIFRELIFESNRRCDGRDYDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSL 393

Query: 355 GTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + E    +D+L+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++
Sbjct: 394 DSPESAMKLDTLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERSL 453

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-- 467
            P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP++ P AG+A+GLV  
Sbjct: 454 LPTLPH--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTK 511

Query: 468 ------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
                 K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +L
Sbjct: 512 YENNDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESL 571

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           Q+A   +  IL+ M + + E R    +  P  E +A+ P Q   +IG  G  ++ I  +T
Sbjct: 572 QKATDAKSKILDIMGESIKEPRKYRKDCWPVSERLAVEPHQRAQLIGPSGLHMKRIYLET 631

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD---VP--EVNKIYKGQVVKVMDFGAF 636
           G  +   DD T  + + S A ++ A+E+I        VP  E   IY  ++ ++ D G  
Sbjct: 632 GTTLTAADDSTFTVFAPSQAALDEAKELIDGYMHKERVPDLEFGGIYTAKITELRDTGVM 691

Query: 637 VH-FCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDD-RGKIKLSMKVV 690
           V  +      L+H SQL   ++A  S +  E D  + VK    D   G ++LS KV+
Sbjct: 692 VTLYPSMPPALLHNSQLDQRKIAHPSALGLEVDQEIQVKYFGRDPVSGFMRLSRKVL 748


>gi|218191180|gb|EEC73607.1| hypothetical protein OsI_08089 [Oryza sativa Indica Group]
          Length = 1030

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 266/751 (35%), Positives = 419/751 (55%), Gaps = 75/751 (9%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  GR +  ETG++AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+YQE+ 
Sbjct: 64  EFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQ 123

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q+++NV+  D +  P 
Sbjct: 124 YAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQDPD 183

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V++  A+SAALMLS +P+ GP+   +V  I+G +VLNP +DE     L+L  + ++D  L
Sbjct: 184 VMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRDKTL 243

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241
           M++++A +++E  +   +   H E    I    +LAK   K+       +I  K + K+ 
Sbjct: 244 MIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKSYEKIR 303

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I+E    S +   K+ R + ++++ + + +    E    +   +    + ++ +
Sbjct: 304 TLSEAPIEEVFTDSTY--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRKQ 361

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V+R  +++K +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG   D Q
Sbjct: 362 VIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQ 421

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH-GRLA--------------- 405
            +DS+ G     FM+HY+F P +  EV++ G  +RRE+GH  RL                
Sbjct: 422 RLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHVTRLPIAWAHTDGLHGPIRL 481

Query: 406 ---------RRAIHP-----------------------------VLPQTAQFPYTLRIVS 427
                     +A+ P                             VLP   +FPYT+R+ S
Sbjct: 482 GDELRVWIEHKALDPTGFLLTNRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNS 541

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDIS 480
           E+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV + D        + IL+DI 
Sbjct: 542 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQTTGDISSYRILTDIL 601

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R  IL+ M + +S
Sbjct: 602 GLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQEIS 661

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +R      +PR+  ++   D +R ++    K    I ++TGA+V++  DGTV I + + 
Sbjct: 662 SARAFNDGSSPRLATLSFSSDSLRKLLFHRKK----IEQETGARVSV-SDGTVTIVAKTQ 716

Query: 601 AEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++ A E +  +     EV K YKG V  + ++GAFV F G + GL+HIS+LS ++V+K
Sbjct: 717 PIMDKAIEKVEFLVGREIEVGKTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSK 776

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SDVV  G  + +  +  D RG IKLS+K  
Sbjct: 777 VSDVVSVGQVLSLTCIGQDLRGNIKLSLKAT 807


>gi|195505449|ref|XP_002099509.1| GE23317 [Drosophila yakuba]
 gi|194185610|gb|EDW99221.1| GE23317 [Drosophila yakuba]
          Length = 771

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/715 (36%), Positives = 403/715 (56%), Gaps = 34/715 (4%)

Query: 6   TVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +VE+ ++ GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V+Y+
Sbjct: 41  SVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVVDYR 100

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D   
Sbjct: 101 LKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 160

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-Q 182
           SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T Q
Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSATKQ 220

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----SKDF 237
           + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++       + 
Sbjct: 221 NLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVTADVDPEL 280

Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            K    M +M ++E  + S    +K  R   +++++  ++    S         I   F 
Sbjct: 281 GKAVRSMCEMRLREIFQDSTH--DKISRDNAVNEVRSNVIDKVWSSFPDTEPSLIAEQFN 338

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
                + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L +
Sbjct: 339 QTSRAIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDS 398

Query: 357 REDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P
Sbjct: 399 QESAMKLDSLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLLP 458

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---- 467
            LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV    
Sbjct: 459 TLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE 516

Query: 468 ----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+
Sbjct: 517 NDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQK 576

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A   +  IL+ MS+ + E R    +  P  E + + P Q   +IG  G  ++ I  +TG 
Sbjct: 577 ATDAKSKILDIMSEAIREPRKYPKDSWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGT 636

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV- 637
            +   D+    + + S A ++ A+E+I        VP  E   IY  ++ ++ D G  V 
Sbjct: 637 SLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVI 696

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 697 LYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751


>gi|194904919|ref|XP_001981085.1| GG11868 [Drosophila erecta]
 gi|190655723|gb|EDV52955.1| GG11868 [Drosophila erecta]
          Length = 771

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/718 (36%), Positives = 405/718 (56%), Gaps = 34/718 (4%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ ++ GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKSKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASVALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234
           T Q+ V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++      
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277

Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +  K    M +M ++E  + S    +K  R   +++++  ++    S         I  
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTH--DKISRDNAVNEVRSNVIDKVWSSFPDTEPSLIAE 335

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F      + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+
Sbjct: 336 QFNQTCRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 395

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L ++E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R+
Sbjct: 396 LDSQESAMKLDSLTALESGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERS 455

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP   ++P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV 
Sbjct: 456 LLPTLPN--EYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 513

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+K+ GI   +++ +
Sbjct: 514 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKVPGIPLKVVMES 573

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   +  IL+ MS+ + E R    +  P  E + + P Q   +IG  G  ++ I  +
Sbjct: 574 LQKATDAKSKILDIMSEAIREPRKYPKDSWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 633

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635
           TG  +   D+    I + S A ++ A+E+I        VP  E   IY  ++ ++ D G 
Sbjct: 634 TGTSLTAVDETHFSIFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 693

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 694 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 751


>gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group]
          Length = 941

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/725 (35%), Positives = 410/725 (56%), Gaps = 64/725 (8%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+YQE+ YA G IP  Y+RRE 
Sbjct: 1   MARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQYAQGVIPTTYMRREG 60

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
            P E E+L  R+IDR IRPLF   + +E Q+++NV+  D +  P V++  A+SAALMLS 
Sbjct: 61  APKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQDPDVMAANASSAALMLSD 120

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +P+ GP+   +V  I+G +VLNP +DE     L+L  + ++D  LM++++A +++E  + 
Sbjct: 121 IPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRDKTLMIDVQAREITERDLQ 180

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEEEMSQMIKEDLRVSC 256
             +   H E    I    +LAK   K+       +I  K + K+       I+E    S 
Sbjct: 181 AGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKSYEKIRTLSEAPIEEVFTDST 240

Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316
           +   K+ R + ++++ + + +    E    +   +    + ++ +V+R  +++K +R+DG
Sbjct: 241 Y--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRKQVIRKRIIEKGLRVDG 298

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R  + VR +  +       HGS+LF RGDTQ +  VTLG   D Q +DS+ G     FM+
Sbjct: 299 RQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFML 358

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH----------------------------------- 401
           HY+F P +  EV++ G  +RRE+GH                                   
Sbjct: 359 HYSFPPFSINEVAKRGGLNRREVGHDGLHGPIRLGDELRVWIEHKALDPTGFLLTNRLVF 418

Query: 402 --------GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
                   G LA +A+  VLP   +FPYT+R+ SE+  SDGS+SMA+VCG S+ALMDAG+
Sbjct: 419 WERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGI 478

Query: 454 PISKPVAGIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           P+ + VAG+++GLV + D        + IL+DI G EDHLG MDFK+AGT  GITA+Q+D
Sbjct: 479 PVREHVAGVSVGLVSEVDQTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLD 538

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +K  GI  +I+  +L+ A++ R  IL+ M + +S +R      +PR+  ++   D +R +
Sbjct: 539 IKPAGIPLDIICESLEPARKARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKL 598

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKG 625
           +    K    I ++TGA+V++  DGTV I + +   ++ A E +  +     EV + YKG
Sbjct: 599 LFHRKK----IEQETGARVSV-SDGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKG 653

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            V  + ++GAFV F G + GL+HIS+LS ++V+K SDVV  G  + +  +  D RG IKL
Sbjct: 654 VVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKL 713

Query: 686 SMKVV 690
           S+K  
Sbjct: 714 SLKAT 718


>gi|332141240|ref|YP_004426978.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551262|gb|AEA97980.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 382

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 267/367 (72%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +    G+L RTHGS+LF RG+TQAI+  TLGT  D Q +D L G + + FM+HYNF 
Sbjct: 2   IRALDVATGILPRTHGSALFTRGETQAIMAATLGTERDAQMIDELQGKRDSRFMLHYNFP 61

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY +R+VSEITES+GSSSMA+V
Sbjct: 62  PYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITESNGSSSMASV 121

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
           CG+SLALMDAGVPI   VAGIAMGLVK  D+F++LSDI GDEDHLG MDFKVAGT  GIT
Sbjct: 122 CGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKVAGTTDGIT 181

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561
           A+QMD+KI GI++ IM +AL+QAK  RLHILN M + +   R +L EF PR+  M I  D
Sbjct: 182 ALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGHREELSEFAPRIYTMKIDQD 241

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +IR+VIG GG +IR I E++   + I+DDGT+KI ++  A+ + A   I  +T   EV K
Sbjct: 242 KIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATERAKADIAIGKIEQVTAEIEVGK 301

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            Y G++ +++DFGAFV     ++GLVHISQ++ ERV K +D +KEG+ V VK+++ D + 
Sbjct: 302 TYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVTDYLKEGEMVDVKVMEIDRQN 361

Query: 682 KIKLSMK 688
           +++LS+K
Sbjct: 362 RVRLSIK 368



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 22/192 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66
           R L + TG + R + G+ L T GET  ++ AT+  +R  +      G+      ++Y   
Sbjct: 3   RALDVATGILPR-THGSALFTRGETQAIMAATLGTERDAQMIDELQGKRDSRFMLHYNFP 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES-- 124
            Y VG+   G +     P   EI   R+  R I+ +     + E   ++ V+    ES  
Sbjct: 62  PYCVGET--GMI---GSPKRREIGHGRLAKRGIQAVMPS--EEEFPYVVRVVSEITESNG 114

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ---YVLNPRL-DEDQ-GSLDLFVS 179
           S  + S+   S ALM +G+P +  V G  +  +       VL+  L DED  G +D  V+
Sbjct: 115 SSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKVA 174

Query: 180 GTQDAVLMVELE 191
           GT D +  ++++
Sbjct: 175 GTTDGITALQMD 186


>gi|16768780|gb|AAL28609.1| LD03255p [Drosophila melanogaster]
          Length = 720

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/704 (36%), Positives = 396/704 (56%), Gaps = 33/704 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V+Y+ +  A G+IP 
Sbjct: 1   MTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRIPM 60

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D   SP V+++ AAS
Sbjct: 61  NFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINAAS 120

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEAN 193
            AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T Q+ V+M+E + N
Sbjct: 121 MALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQNLVVMLEGKGN 180

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----SKDFSKLEEEMSQM- 247
            + +  +L AI  G  E + +I  I +L K   ++   ++       +  K    M +M 
Sbjct: 181 VVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPELGKAVRSMCEMR 240

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           ++E  + S    +K  R   +++++  ++    S         I   F      + R ++
Sbjct: 241 LREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQTSRTIFRELI 298

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L ++E    +DSL+
Sbjct: 299 FERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLA 358

Query: 368 -----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
                G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P LP    +P+T
Sbjct: 359 ALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPTLPN--DYPFT 416

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDFI 474
           +R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV        K   D+ 
Sbjct: 417 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYR 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A   + +IL+ 
Sbjct: 477 ILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSNILDI 536

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG  +   D+    
Sbjct: 537 MSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFN 596

Query: 595 IASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV-HFCGARDGLVH 648
           + + S A ++ A+E+I        VP  E   IY  ++ ++ D G  V  +      L+H
Sbjct: 597 VFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPALLH 656

Query: 649 ISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 657 NSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 700


>gi|266619741|ref|ZP_06112676.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
 gi|288868702|gb|EFD01001.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
          Length = 551

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/560 (40%), Positives = 346/560 (61%), Gaps = 21/560 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  +++E+  AGR L +E GR+A+Q+ GA L  YG+TVVL+T       ++G DFFPL+
Sbjct: 1   MFKSYSMEL--AGRTLTVEVGRVAKQASGAALMHYGDTVVLSTATASDKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ ++ A  +S +PF+GP    Q+  ++G+ V+NP   + Q S + L V+
Sbjct: 119 DQDCSPELTAMLGSAIATCISDIPFDGPCATTQIGMVDGELVVNPTQAQKQASDMALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ V+M+E  AN++ ED++++AI   H+  + VI+ I  +   C K      S     
Sbjct: 179 STREKVIMIEAGANEVPEDIMIEAIFKAHSVNQEVIKFIDTIVAECGKPK---HSYISCA 235

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIV 292
           + EE+   IKE     ++ V+ F  +K  R + I  +  K+   F ++   W    GE V
Sbjct: 236 VPEELFAAIKEIVPPAEMEVAVFTDDKQTREENIRTITAKLEEAF-ADKEEWLAVLGEAV 294

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             +   Q K VR ++L    R DGR  + +R ++A++ +L R HGS++F RG TQ + + 
Sbjct: 295 YQY---QKKTVRKMILKDHKRPDGRAIDQIRPLAAEIDMLPRVHGSAMFTRGQTQILNIC 351

Query: 353 TLGTREDEQYVDSLSGTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TL    + Q +D +   + +  +M HYNF   + GE      P RREIGHG LA RA+ P
Sbjct: 352 TLAPLSESQRLDGIDDMETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIP 411

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--D 469
           VLP   +FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV    
Sbjct: 412 VLPSEEEFPYAIRTVSETMESNGSTSQASICSSSMSLMAAGVPIKSAVAGISCGLVTGDT 471

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            DD+I+L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++ +  R+
Sbjct: 472 DDDYIVLTDIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRRTREARI 531

Query: 530 HILNE-MSKVLSESRLQLGE 548
           +IL+E M+K ++E R ++G+
Sbjct: 532 YILDEVMAKAIAEPRKEVGK 551


>gi|193690697|ref|XP_001944927.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 762

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 401/711 (56%), Gaps = 32/711 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +KL  G+ AR SDG  +AT G+T V+AT V   +     +F PLTV+Y+++  A G+IP 
Sbjct: 45  IKLSGGKYARLSDGCAVATLGDTSVMATTVSKSTKSS-SNFLPLTVDYRQKAAAAGRIPT 103

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            YLRRE   +E+EIL SR+IDRS+RPLF   Y  +TQ++ N++  D  + P ++S+ AAS
Sbjct: 104 NYLRRELSVSEHEILTSRLIDRSLRPLFPSTYCFDTQIMCNLLAVDGINHPDILSINAAS 163

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDL-FVSGTQDAVLMVELEAN 193
            AL LS +P+ GPV   +V   +   V NP R +     L+L  VS  ++ V+M+E  AN
Sbjct: 164 TALALSDIPWNGPVGAVRVGLCDNNLVTNPTRRELSNSELNLVVVSAAKNLVIMLEGSAN 223

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF----SKLEEEMSQMIK 249
            + +  VL AI FG  EC+ ++  I  L K   K     ++K+       LE  +    +
Sbjct: 224 NVLQQDVLKAIKFGVKECQHIVNCIDNLQKEFGKPKREFETKNIDDTNGNLETVIDSFCE 283

Query: 250 EDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
             LR   +     K  R   + D+K +++    S   + N      +F+ +  ++ R ++
Sbjct: 284 IKLREIFTNVNHHKISRDIAVKDVKTEVIENLKSNFDNLNLELCSIIFDKVCKRIFRNLI 343

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL- 366
            +   R DGR  + +R+IS +V L +  HGS+LF RG TQ    V L + +    +D + 
Sbjct: 344 FENDTRCDGRKLDDLRNISCEVDLYKPLHGSALFQRGQTQVFCTVALDSIDSALKLDPMT 403

Query: 367 ---SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              SG    +F +HY F P AT ++ RMG   RREIGHG LA R +  ++P+   FP+T+
Sbjct: 404 ILTSGINEKNFFLHYEFPPYATNDIGRMGPSMRREIGHGALAERGLRSIVPE--NFPFTI 461

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DFII 475
           R+ SE+ ES+GSSSMA++CG SLALMDAGVPIS+P AG+A+GL+ + D        D+ I
Sbjct: 462 RLTSEVLESNGSSSMASICGGSLALMDAGVPISQPAAGVAIGLITNYDDNDSKHIKDYRI 521

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED+LG MDFK+AGT  GITA+Q D+KI G+   I++ A++ A   +  I+N M
Sbjct: 522 LTDILGIEDYLGDMDFKLAGTKKGITALQADIKIPGLPLKIVMEAVEAATSAKHKIINIM 581

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTV 593
           +  +  +R Q  +  P  EI+ +P  +   ++G GG  ++ I+ +TGA++  N ++DG  
Sbjct: 582 NATIQSTRKQKKDNWPVTEILNVPIHKKGKLLGPGGINLKRIMLETGAQISSNSENDGFT 641

Query: 594 KIASSSLAEIEAAREMIRSITDVP----EVNKIYKGQVVKVMDFGAFVH-FCGARDGLVH 648
             A +  A  EA   + + + +      E   IYK +VV++ + G  V  +   +  LVH
Sbjct: 642 IFAPNQDALDEAKETVDKLMAEKSEPQLEFGAIYKAKVVEIREIGVMVTLYPSMQPTLVH 701

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            SQL   +++  S + ++EG  + +K    D   G ++LS KV+   +  P
Sbjct: 702 NSQLDQRKISHPSALGLEEGHEIQIKYFGRDPVSGMMRLSRKVLQGPSSSP 752


>gi|328784963|ref|XP_396984.3| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Apis mellifera]
          Length = 747

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/705 (35%), Positives = 396/705 (56%), Gaps = 55/705 (7%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G  +KL TG+ AR + G+V+AT G+T ++ TVV +  L +     PLTVNY+++  A+G+
Sbjct: 50  GSEIKLSTGKYARFTSGSVIATVGDTSIMTTVVRNNVLSNNS-IIPLTVNYRQKAAAIGR 108

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  + RRE   T+NEIL+SR+IDRS+RPLF   Y  ETQ++ N++  D  ++P V+S+ 
Sbjct: 109 IPTNFFRRELGYTDNEILVSRIIDRSLRPLFQPKYSYETQIVCNLLAIDGINNPDVLSIN 168

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-TQDAVLMVEL 190
           AASAAL +S +P+ GPV   ++  I+  Y++NP   E  Q  L+L +S  +++ ++M+E 
Sbjct: 169 AASAALSISDIPWNGPVAAVRIGLIDNTYIINPSKRELQQSKLNLVLSCISKNLIVMIEG 228

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LEEEMSQMI 248
            AN + E  +  AI  G  EC+ +I +IS+L K   K  + I S D S   +EE + + +
Sbjct: 229 SANDILEPELRKAIKLGIKECQTIINSISELQKQIGKPKLNIVSDDESNNDVEEFVREFV 288

Query: 249 KEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
             +LR   +    +K  R   I DL+ +M+    +  S + E  +  +F +I  ++ R++
Sbjct: 289 SNELREIFNYHFHDKISRDNAIFDLRNRMLEKIKNHDSKYIENAL-KIFSNISKEIFRSL 347

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           + + + R DGR    +R+IS QV L Q  HGS+ F RG TQ +  VTL + E    +D++
Sbjct: 348 IFETEKRCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTVTLDSIESSLKLDTI 407

Query: 367 ----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               SG +  +F +HY F P A  E  ++    RREIGHG LA + +  V+PQ   +P+ 
Sbjct: 408 SMLSSGIKEKNFFLHYEFPPYAINETGKLTGIDRREIGHGALAEKGLQAVIPQ--NYPFA 465

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--------DDFI 474
           +R+ SE+ ES+GSSSMA++CG SLALM+AG+PIS PVAG+AMGLV +          D+ 
Sbjct: 466 IRLTSEVLESNGSSSMASICGGSLALMNAGIPISSPVAGVAMGLVCNNTNTADLKETDYK 525

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DISG EDHLG MDFK+AGT  G TA Q D+K+ GI   ++     + K         
Sbjct: 526 ILTDISGIEDHLGDMDFKIAGTKRGFTAFQADIKVPGIPFKVITKTTNKKKN-------- 577

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
                           P ++ + +P  Q R+ +G+GG  ++ I+ +TG  +   +D    
Sbjct: 578 ---------------KPVLDTIEVPIHQRRHFLGIGGLNLKKILHETGVNIYSVNDTVFS 622

Query: 595 IASSSLAEIEAAREMIRSITDV---PEV--NKIYKGQVVKVMDFGAFVH-FCGARDGLVH 648
           I + +   ++ A+ MI  I +    P +    IY  ++ ++ + G  V  +      L+ 
Sbjct: 623 IFAPNQNAMDEAKYMINKILETEVEPTLIFGDIYTAKITEIREIGVMVTLYPTMMPTLLP 682

Query: 649 ISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            SQL   ++    DV  +  GD + VK    D   G+I+LS K++
Sbjct: 683 NSQLDQRKIHH-PDVLGLNVGDEIKVKYFGRDPVNGRIRLSRKIL 726


>gi|126304424|ref|XP_001382164.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 785

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 401/713 (56%), Gaps = 31/713 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            TV ++  GR L++ +GR+AR +DG  +   GET V+ T V        Q F PL V+Y+
Sbjct: 45  RTVTVDLGGRKLEISSGRLARFADGCAVVQSGETAVMVTAVSKTKPSPSQ-FMPLVVDYK 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  +LRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 104 QKAAAAGRIPTNHLRREFGSSDKEILTSRIIDRSIRPLFPSGYFYDTQVLCNLLAVDSVN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQD 183
            P V+++  ASAAL LS +P+ GP+   ++  I+G+Y++NP R +    +L+L V+G  +
Sbjct: 164 EPDVLAINGASAALSLSDIPWNGPIGAVRIGIIDGEYIVNPTRKEMSYSTLNLVVAGAPN 223

Query: 184 A-VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           + ++M+E  A  + +     AI  G    + +I+ I KL K   +       K FS   E
Sbjct: 224 SQIVMLEAAAENVLQQDFCHAIKVGMKHNQQIIQGIQKLMKESGRVKRT-PQKLFSAPPE 282

Query: 243 EMSQMIKEDLR-----VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +  + K  +       + +  +K  R   I+ ++  +      +    +  EI+  F  
Sbjct: 283 MVKFVNKHAMERIYAVFTDYNHDKVSRDDAINKIRLDIEELIKEKFPEADPYEIIESFNV 342

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +   V R+++L++  R DGRD  ++RDIS +V + +  HGS+LF RG TQ +  VT  + 
Sbjct: 343 VSKDVFRSIVLNEYRRCDGRDLTSLRDISCEVDMFRTLHGSALFQRGQTQVLCTVTFDSL 402

Query: 358 EDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           E     D    ++SG +  +FM+HY F P AT E  ++   +RRE+GHG LA ++++PV+
Sbjct: 403 ESSLKSDPITTAISGIKEKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKSLYPVI 462

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------ 467
           P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GL+      
Sbjct: 463 PK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLIAKNSSN 520

Query: 468 KDG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+G  +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA 
Sbjct: 521 KEGEIEDYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAIQQAT 580

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  QTG  V
Sbjct: 581 AAKREILQIMNKTISKPRESRKENGPVVETVQVPLTKRAKFVGPGGYNLKRLQAQTGVTV 640

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-F 639
           N  D+ T  + + + + +  ARE I  I         E   +Y   + ++ D G  +  +
Sbjct: 641 NQVDEETFSVFAPTPSAMNEAREFITEICKDDQEHQLEFGAVYTATITEIRDTGVMIKLY 700

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H SQL   +V   S +  E G  + VK    D   G+++LS KV+
Sbjct: 701 PNMTAVLLHNSQLDQRKVKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 753


>gi|322785621|gb|EFZ12276.1| hypothetical protein SINV_11817 [Solenopsis invicta]
          Length = 692

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/669 (36%), Positives = 386/669 (57%), Gaps = 30/669 (4%)

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
           F PL V+Y+++  A G+IP  +LRRE  P+E+EIL SR+IDRSIRPLF + +   TQ++ 
Sbjct: 15  FLPLVVDYRQKAAAAGRIPTNFLRRELGPSEHEILTSRVIDRSIRPLFPEGFYFNTQIMC 74

Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-L 174
           N++  D  + P V+++  ASAAL +S +P+ GPV   ++  I+ + ++NP   + Q S L
Sbjct: 75  NMLAIDGMNDPDVIAINGASAALSVSDIPWNGPVGAVRLGMIDNEIIVNPTRRQIQDSIL 134

Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           +L ++   Q+ ++M+E  AN++ E  +  AI  G  EC+ ++ AI+ L K C K   V++
Sbjct: 135 NLIITAAKQNLIIMLEGSANEILEQQLRKAIKLGVKECQSIVAAITNLQKTCGKTKRVLE 194

Query: 234 SKD------FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           + +       +    E+S+   +D+  S    +K  R   ++DL+  ++    ++++  +
Sbjct: 195 TSEQQQDDSLNSSVRELSEAKLQDI-FSNHTHDKISRDNAVNDLRNNVIEILRNDNADLD 253

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
                S+F  +   V RT++L+K VR DGR  + +RDIS QV L    HGS+LF RG TQ
Sbjct: 254 VKLAESIFGKVVKDVFRTLILEKGVRCDGRPMDGIRDISCQVDLFNPLHGSALFQRGQTQ 313

Query: 348 AIVVVTLGTREDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
            +  VTL + +    +D+    +SG +  +F +HY F P AT E        RRE+GHG 
Sbjct: 314 VMCAVTLDSLQSALKMDTISMLISGMKEKNFFLHYEFPPYATNETGHASRAGRRELGHGA 373

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +A+ PVLP+   +P+T+R+ SE+ ES+GSSSMATVCG SLAL+DAG+PIS P AG+A
Sbjct: 374 LAEKALRPVLPK--DYPFTIRLTSEVLESNGSSSMATVCGGSLALLDAGIPISSPTAGVA 431

Query: 464 MGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           +GLV   +       ++ IL+DI G ED+LG MDFK+AGT  G TA+Q D+KI G+   I
Sbjct: 432 IGLVTKCNETNTNIENYKILTDILGIEDYLGDMDFKIAGTKRGFTALQADIKISGVPLKI 491

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           ++  +QQA   +L I+  M+ V+ E R    +  P V+ + +P  Q    +G+GG  ++ 
Sbjct: 492 IMECIQQATNAKLQIIKTMNTVIREPRQTRKDKMPVVDNLEVPIHQRGKFLGIGGMNLKK 551

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVM 631
           I+ +TG  +   D+ T  I + +   +  A+EMI ++       + E   IY  ++V++ 
Sbjct: 552 ILLETGVHIYPHDENTYSIFAPNEDAMTEAKEMIENVLQKDREPILEFGAIYTAKIVEIR 611

Query: 632 DFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMK 688
           + G  V  +      L+  SQL   ++   S +  E G  + VK    D   G+I++S K
Sbjct: 612 ETGVMVTLYNNMIPTLLPNSQLDQRKILHPSALSLEVGQDIQVKYFGRDPVSGQIRISRK 671

Query: 689 VVDQNTGKP 697
           V+ + T  P
Sbjct: 672 VLQKPTLTP 680


>gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
          Length = 729

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 266/687 (38%), Positives = 396/687 (57%), Gaps = 62/687 (9%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPLTVNYQE 65
           +EI   G       G++ARQ+DG+VL   G+T++LATVV  D+++   + F PLTV Y E
Sbjct: 6   IEITSNGLQESFTLGKVARQTDGSVLYRQGKTMILATVVSSDKAVH--EPFLPLTVQYIE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA  KIPGG+++RES+P++ E L SR+IDRS+RPLF + +   T + + V+  D E  
Sbjct: 64  KAYAAAKIPGGFVKRESKPSDFETLTSRIIDRSLRPLFPEDFAYPTVITVLVLSADSEVD 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             V ++ AA+AAL++S LP E  V   ++  I+G+  LNP L   ++ +LDL + G+ + 
Sbjct: 124 LQVAALHAANAALLVSDLPVERSVAAVRLGKIDGERRLNPPLSRMEESALDLLLVGSGEE 183

Query: 185 VLMVEL------------------------------EANQLSEDVVLDAIIFGHNE---- 210
           +LM+E+                              E+N+L E+ ++  I     E    
Sbjct: 184 LLMIEMAAKATEVIEVEEIPEPELLMGPMPVLLPHQESNELPEEELIALIGEARGEIAEA 243

Query: 211 CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL--RVSCFIP--EKYVRCK 266
           C+   EA+        + P VID  +     E+++ +++E    R++  +    K  R  
Sbjct: 244 CRRYEEALRPFKAEIREFPPVIDRAEL----EDLTALVREQFSDRIASALAGLSKSERAD 299

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIV-SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDI 325
            ID++ +++ +Y   EH    E  +V    E ++ +++R  +L++ VR DGR  + VR I
Sbjct: 300 IIDEVVQEVEAYL-VEHGIHREPLVVYRAIEAVKREMLRRQILEEGVRPDGRKPDEVRPI 358

Query: 326 SAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPC 383
           S +  LL   HGS LF RG+TQA+  VTLG  ++ Q  + L+    +   FM+HYNF P 
Sbjct: 359 SIETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSPRTERFMVHYNFPPF 418

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
             GE   +GAPSRRE+GHG LA+RA+ PV+ +  +   T+R+VSEI ES+GSSSMATVC 
Sbjct: 419 CVGEARPIGAPSRRELGHGNLAKRALEPVIDR--ELSRTIRLVSEILESNGSSSMATVCA 476

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            SLAL+ A   IS  VAG+AMGLVK+GD   +L+DI G EDH G MDFKVAGT  GITAM
Sbjct: 477 GSLALVSAEAEISALVAGVAMGLVKEGDRHRVLTDIMGLEDHDGDMDFKVAGTRKGITAM 536

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q+D+K+GG+   I+  AL QAK+ R HIL+ M +  ++  +      P  E   I P +I
Sbjct: 537 QLDIKLGGLDLEILSEALTQAKKARFHILDLMEE--AQKSIVPSAALPVAEHFHIDPSKI 594

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITD-----VP 617
            +VIG  G  IR I+E+   K+++D + G VK+  +   +++AARE I  I       VP
Sbjct: 595 VHVIGKAGSTIREIIEKFEVKIDMDREKGKVKVTGADREKVKAAREHIEGIASREEPKVP 654

Query: 618 --EVNKIYKGQVVKVMDFGAFVHFCGA 642
             EV   Y+G V ++ D+G FV   GA
Sbjct: 655 KYEVGATYQGTVKRIADYGLFVELPGA 681


>gi|321469848|gb|EFX80827.1| hypothetical protein DAPPUDRAFT_243159 [Daphnia pulex]
          Length = 743

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 405/711 (56%), Gaps = 41/711 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ L  ++G+ AR +DG+ +A++G+T VL T V  ++      F PLTV+Y+++  A G+
Sbjct: 23  GKKLVFQSGKYARFADGSAVASFGDTAVLVTAV-SKAKSSPASFLPLTVDYRQKAAAAGR 81

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  +LRRE   +E EIL SRMIDRS+RPLF   Y  ETQV+ N++  D  + P V+S+ 
Sbjct: 82  IPTNFLRRELGTSEREILTSRMIDRSLRPLFPDGYFYETQVVCNLLSVDGVNDPEVLSIN 141

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVEL 190
           AASAAL +S +P+ GPV   +V +I+ + V+NP R +     L+L VS T  + V+M+E 
Sbjct: 142 AASAALAISDIPWNGPVAAVRVGFIDNEVVINPTRRELAHSQLNLVVSSTFPNLVVMLEA 201

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL----EEEMS- 245
            A  + +   L AI  G  EC+ + +AI KL +   K       ++F+ L    EE +S 
Sbjct: 202 SAENVYQQDFLKAIRTGVKECQTIAKAIEKLREDAGKP-----KREFTVLPSGSEELLSA 256

Query: 246 -QMIKED-LRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            +++ E+ LRV    F  +K  R   +  ++  ++    +     +   I   F     +
Sbjct: 257 VKLLSENRLRVILRDFNHDKISRDVAVATVRNDVMEKLRTSFPDTDPMIISESFNKFFKE 316

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R ++LD+++R DGR    +R+IS  V L +  HGS++F RG TQ +  V   + E   
Sbjct: 317 FFRQLILDEEIRCDGRKLTDIRNISCGVDLYKPLHGSAIFQRGQTQVVCTVAFDSPESAL 376

Query: 362 YVDSLS----GTQRNDFMMHYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLP 414
             D +S    G +  +F +HY F P AT E  R+   G+  RRE+GHG LA + + PV+P
Sbjct: 377 KSDPVSILMGGLKAKNFFLHYEFPPYATNETGRVGSGGSAGRRELGHGALAEKGLRPVVP 436

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------- 467
             + +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI +P AG+A+GLV       
Sbjct: 437 --SDYPFTIRLTSEVLESNGSSSMASVCGGSLALMDAGVPILQPAAGVAVGLVSRVNPET 494

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K  DD+ IL+D+ G ED+LG MDFK+AGT  GITA+Q D K+ G+   I++ ++ QA   
Sbjct: 495 KQIDDYRILTDLLGIEDYLGDMDFKLAGTKKGITALQADFKLPGVPLKIIMESVVQASDA 554

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           + HIL+ M++ + + R    +  P  E + I   +    +G+GG  ++ +  +TG ++  
Sbjct: 555 KSHILDIMAQTIKQPRNDKKDIWPLSEKLEIEAHKRPKFVGIGGSNLKKLTAETGVQITS 614

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSI-----TDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            DD T  I + + + ++ A+EMI            E   IYK ++V++ + G  V F   
Sbjct: 615 IDDLTFSIFAPNQSAMDEAKEMIEQFLKEEKEPELEFGAIYKARIVEMKETGVLVTFYPK 674

Query: 643 R-DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
               L+H SQL   +VA  S + ++ GD + +K    D   G+++LS KV+
Sbjct: 675 MVPTLLHNSQLDVRKVAHPSALGLQVGDEISIKYFGRDPVSGRMRLSRKVL 725


>gi|298708135|emb|CBJ30476.1| Polyribonucleotide nucleotidyltransferase [Ectocarpus siliculosus]
          Length = 763

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/719 (34%), Positives = 383/719 (53%), Gaps = 55/719 (7%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +  ETG+IA+ +DG V A  G TVV+ + V +R+  D   F PL+V+Y+E+ +A+GKIP 
Sbjct: 19  ITFETGKIAQLADGFVTARQGGTVVMVSAVSNRAEMDDSGFLPLSVDYREKAHALGKIPR 78

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
              RR+ R T+ E+L++R +DR +RPLF   Y  +TQV+  V   +    P VV++ AAS
Sbjct: 79  TPNRRDGRETDEEVLVARAVDRVLRPLFPPGYCFDTQVVATVQALEAGGDPVVVAINAAS 138

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-------EDQGSLDLFVSGTQDAVLMV 188
           AAL +S +P++GP    ++  ++G+ V+NP  D        D G  DL  +  +  VLM+
Sbjct: 139 AALCVSNIPWDGPAGCVRIGRVDGKLVVNPSPDTFSPTAWNDGGGFDLLYAANEHRVLMI 198

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           E+      E ++  A+   H    P+IEA   L +   KE ++  S            M+
Sbjct: 199 EMGGGPTGERLMDSALKLAHKHVAPLIEAQRALQRDAGKEKVLPRSDAAPS-----PGML 253

Query: 249 KEDLRVSCFIPEK----YVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--------SVFE 296
            E +RV   +P+         K  DD         S       EG ++        + F 
Sbjct: 254 TEAMRVG--LPDAKALFAAPPKGGDDATAGESGNPSKADRGRAEGALLGRVRKALATSFP 311

Query: 297 DIQA------------KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           D               + +R  ++++  R DGR  +  RD++ +V +L   HGS +F RG
Sbjct: 312 DAPPAARVAAAEAVLKRAMRAAIVEEGRRPDGRGKDEARDLTGEVDVLPTVHGSGMFTRG 371

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRND------FMMHYNFLPCATGEVSRMGAPSRRE 398
            TQ + +VTLG   +      L   Q           +HY F P    E  R+G  +RR 
Sbjct: 372 QTQTLAIVTLGPALESAPQRFLGKAQEASDTLDARLYLHYEFPPYCVNETGRVGLVNRRM 431

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           +GHG LA RA+  V+P+T  FPYT R+ +E+T S+GSSSMAT C +SLALMDAGVP+S P
Sbjct: 432 VGHGNLAERAVLSVMPETETFPYTTRVSAEVTMSNGSSSMATACATSLALMDAGVPVSSP 491

Query: 459 VAGIAMGLV-----KDGDDF---IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI- 509
           V GI++GL+      DG+D     IL DI G EDH G MDFKVAGT +GITA+Q+D+K+ 
Sbjct: 492 VGGISVGLMTTDAPADGEDIGPHSILMDIQGTEDHYGDMDFKVAGTATGITAIQLDVKLR 551

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
           GG+   ++  AL+ AK GR  +L  M K +      L +  PR EI+    D+ ++++G 
Sbjct: 552 GGVPLPVLSEALRVAKAGRAQVLKAMKKAIGSPNGTLKDRAPRCEIVHFEADRKKDLVGF 611

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            G+ ++GI E  G  +++  +G   + S +   +  A  ++R +    E    Y+G V  
Sbjct: 612 QGQTMKGIEENFGVALDLSTEGRAVVFSDNAQSVAGAVRLVRELVHEIEEGDFYEGTVTT 671

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V ++G  V     + GL+H+S ++ +  A  + D+VK GDTV V++++ D  RG IKL+
Sbjct: 672 VHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVGVRVMEVDRLRGLIKLA 730


>gi|15612201|ref|NP_223854.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           J99]
 gi|81555135|sp|Q9ZK11|PNP_HELPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4155738|gb|AAD06718.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
          Length = 688

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 398/712 (55%), Gaps = 59/712 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLNHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASA L L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASATLFLAHIAPIKSVSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227

Query: 241 EEEMSQMIKE------DLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHS 284
           + E+  + KE      + R+   +  +Y              + +++ K++    S  HS
Sbjct: 228 QNEL--LFKEGEGIVLNERLLDLLKNQYFDEIIKGIESSALSERENVFKEVAKKISEAHS 285

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
            ++  EI    E ++   +R +++  K+R D R  E VR IS +  LL   H S LF RG
Sbjct: 286 EFSLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRG 345

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
            TQ++VV  LG   D Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG
Sbjct: 346 QTQSLVVGVLGMDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHG 405

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+
Sbjct: 406 NLAKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGV 462

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMG+V +  D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL 
Sbjct: 463 AMGMVSERQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALL 522

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QAKR R HIL  M +   +  +      P+ EI  + PD+I  +IG GG+VI+ IVE+  
Sbjct: 523 QAKRARKHILKIMHEAKEKIVINFSHL-PQTEIFNVAPDKIIEIIGQGGRVIKEIVEKFE 581

Query: 583 AKVNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGA 635
            K++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGA
Sbjct: 582 VKIDLNTPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGA 641

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           F+      +GL     L  + + K   ++KEGD++  +++ F ++GKI L +
Sbjct: 642 FLSLPKGGEGL-----LRKQNMDKCQVILKEGDSIRCRVISF-NKGKIALDL 687


>gi|255087891|ref|XP_002505868.1| predicted protein [Micromonas sp. RCC299]
 gi|226521139|gb|ACO67126.1| predicted protein [Micromonas sp. RCC299]
          Length = 791

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/707 (36%), Positives = 395/707 (55%), Gaps = 39/707 (5%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            ETGR+AR +DGA++A+ G++ V+   V  R       FFPL V+Y+ER  A GKIP  +
Sbjct: 53  FETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIPPTF 112

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            RRE  P + E+L  R++DR+IRPLF K +  +T V   V+  D    P V+++  ASAA
Sbjct: 113 TRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVLAVNGASAA 172

Query: 138 LMLSGLPFEGPVVGAQVDYIN--GQYVLNPR-LDEDQGSLDLFVSGTQDAVLMVELEANQ 194
           L +S +P+ GPV   +V  +    + +LNP   D +   L LF +G ++  LM+E +A  
Sbjct: 173 LSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLTLFYAGNENRTLMIEAQAGT 232

Query: 195 -----LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQM 247
                + E VV  A+   H   K +IE   +L +   KE +  V  + + +KL  ++   
Sbjct: 233 ADEGGVPESVVASALRAAHEAAKVLIEPQRRLQRAIGKEKLDPVQQTPEQAKLRHDVFDR 292

Query: 248 IKEDLR------VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             E LR      + C    K+ R K++ +LK ++V+  + E  S+   ++   F  + ++
Sbjct: 293 SSEKLRALYKEEIQC----KHTRGKRMAELKDEIVNSMTEEGMSFTNNDVEQAFFWVSSR 348

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V+R ++ + K R+DGR    +R + A+  +L   HGSS+F RG+TQA+  VT+G   D Q
Sbjct: 349 VMRDMIFEDKKRVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQ 408

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+  G      M+HY+F   +  E  R G  SRREIGHG LA +++  ++P   ++P+
Sbjct: 409 KLDAPVGPDNRRMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPF 468

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-------FI 474
            +RI +E  ES+GSSSMA VC  SLALMDAGVPI + V  I++GLV D D+       + 
Sbjct: 469 AVRINAETMESNGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVMDEDEQTGKVTRYE 528

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI G ED LG MDFK+AGT  GIT +Q+D K  GI  +I++ A+  A   R  +++E
Sbjct: 529 LLSDIMGLEDVLGDMDFKIAGTRGGITGIQLDCKPAGIPLDILIEAMDVASIARSAVIDE 588

Query: 535 MSKVLSESRLQ-LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI------ 587
           M + +S+ R +   E   +   + +    I  +IG  G  IR +   TGAKV+I      
Sbjct: 589 MDRAISKPRSRDDSEDGAQFTTVRMDRSLIGRLIGPKGDTIRELERTTGAKVSIHEEDDA 648

Query: 588 --DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
             DD  T+ I + +   ++AA E I+ I  VP+   + K +VV  + +G F+     +DG
Sbjct: 649 GVDDQCTLGIFAGTRPGLDAALEKIQLIAWVPKEGDVVKAKVVNQLAYGWFLRLPNEQDG 708

Query: 646 LVHISQ-LSTERVAKTSD-VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           L+H S+ L T +V    D + + G+ V VK+ D  D G++ LS+K +
Sbjct: 709 LLHASEYLHTRKVDPMKDNIFQIGEEVLVKIKDVSD-GRVGLSVKAL 754


>gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Anolis carolinensis]
          Length = 765

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 260/713 (36%), Positives = 401/713 (56%), Gaps = 31/713 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HTV +E   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+
Sbjct: 25  HTVSVEVGSRKLEISSGKLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQ-FMPLVVDYR 83

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  +
Sbjct: 84  QKAAAAGRIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYYYDTQILCNLLAVDGVN 143

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P V+++  ASAAL LS +P+ GP+   +V  I+G+ V+NP R +    +LDL VS   +
Sbjct: 144 DPEVLAINGASAALTLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSSTLDLIVSSAPR 203

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             V+M+E  A  + +     AI  G    + +I+ I +LAK     P     K F+  EE
Sbjct: 204 SQVVMLEAAAENVLQQDFCHAIKVGVKHGQQIIQGIQQLAKEQGV-PKRTVQKLFTAPEE 262

Query: 243 EM---SQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +    Q+  E +    S F  +K  R + I+ ++ +       +       EI+  F  
Sbjct: 263 TVECAKQLASEKITAVFSDFTHDKISRDEAINKIRLETEEQLKEKFPDSEPYEIMEAFNV 322

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +   + R ++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + 
Sbjct: 323 VSKDIFRNLILNEYRRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSL 382

Query: 358 EDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           E     D    ++SG +  +FM+HY F P AT E+ ++ + +RRE+GHG LA +A+ PV+
Sbjct: 383 ESSVKSDLITTAISGIKEKNFMLHYEFPPYATNEIGKISSMNRRELGHGALAEKALKPVI 442

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------ 467
           P   +FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV      
Sbjct: 443 PN--EFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTSPNSE 500

Query: 468 KDGD--DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+GD  ++ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA 
Sbjct: 501 KNGDIENYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPLKIVMEAIQQAT 560

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K + + R    E  P VE + +P  +    +G GG  ++ +  +TG  V
Sbjct: 561 VAKREILQIMNKTIGKPRASRKENGPLVETVQVPLSKRARFVGPGGYNLKKLQAETGVTV 620

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  I + + A +  A+E I  +         E   IY   + ++ D G  V  +
Sbjct: 621 SQVDEETFSIFAPTPAAMHEAQEFITEVCKDDQDYQLEFGAIYTATITELRDIGVMVKLY 680

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H SQL   ++   S +  E G  + VK    D   G+++LS KV+
Sbjct: 681 PNMTPVLLHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 733


>gi|308062494|gb|ADO04382.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Cuz20]
          Length = 688

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 256/710 (36%), Positives = 395/710 (55%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCAERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASA L LS +     V   ++  I  ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASATLFLSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E  +L A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQQLNALEEPSMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  ++R D R  E VR I  +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDRIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K
Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PTTEIFNVEPDKIVEIIGQGGRVIREIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|208435109|ref|YP_002266775.1| polynucleotide phosphorylase [Helicobacter pylori G27]
 gi|257096696|sp|B5Z8L0|PNP_HELPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|208433038|gb|ACI27909.1| polynucleotide phosphorylase [Helicobacter pylori G27]
          Length = 688

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/695 (36%), Positives = 391/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR+ RPLF K Y+  TQ+ + V+ HD+E+   V ++ AAS AL L+
Sbjct: 78  GRAQDFEILTSRLIDRTFRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASVALFLA 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIDDEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFHEIAKKISEAHSEFSLEEIEWSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKTPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D+ ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK  R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYTIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V++EGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLREGDSIRCRVISF-NKGKIALDL 687


>gi|119112780|ref|XP_318517.3| AGAP010791-PA [Anopheles gambiae str. PEST]
 gi|116118616|gb|EAA13718.3| AGAP010791-PA [Anopheles gambiae str. PEST]
          Length = 737

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/705 (35%), Positives = 399/705 (56%), Gaps = 33/705 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R LK+ +G+ AR +DG  + T G+T V+ T V  +  ++   F PL V+Y++++ A G+I
Sbjct: 1   RILKISSGKYARFADGCSVVTIGDTAVMVTAVAKQKSQNAS-FLPLVVDYRQKSAAAGRI 59

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRRE  P+E EIL +R++DRSIRPLF   ++ +TQ++ N++  D  + P V ++  
Sbjct: 60  PTNFLRRELGPSEKEILSARLVDRSIRPLFPAEFRYDTQIVCNMLAIDSANPPDVQAING 119

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMVELE 191
           ASAAL LS +P+ GPV   +V  ++ + ++NP   E Q  SLDL V+ T Q+ V+M+E  
Sbjct: 120 ASAALALSDIPWNGPVGAVRVGLVDNEAIINPTRKEMQLSSLDLVVTATRQNLVVMLEGR 179

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQ 246
            N ++E+ +  AI  G  E + +I  I +L KM  K     EP+     +     + MS+
Sbjct: 180 GNVVNENELRMAIKKGTKEAQLIINGIERLQKMYGKPKRALEPLPAVDGEIQNAVQTMSE 239

Query: 247 M-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           M ++E  R   +  +K+ R + +   +   +    S   + + G I   F      V R 
Sbjct: 240 MRLREIFR--DYSHDKFSRDQAVSKTRTDTIDKVWSSFPAADPGVISETFNKFVKGVFRE 297

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L++K R DGR  + +R IS  V L +  HGS+LF RG TQ    V L + E    +D 
Sbjct: 298 MLLEEKRRCDGRGLDDLRKISCSVNLHKPLHGSALFQRGQTQVFCTVALDSPESALRLDP 357

Query: 366 L----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +    SG +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P   + P+
Sbjct: 358 IASLDSGMRSKNFFLHYEFPPYATGETGKIGPIGRREIGHGALAEKGLVPIIPN--EHPF 415

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDF 473
           T+R+ SE+ ES+GSSSMATVC  S+ALMDAGVP+ +  AG+A+GL+        K   D+
Sbjct: 416 TVRLTSEVLESNGSSSMATVCAGSMALMDAGVPVQEAAAGVAIGLITKYENNDTKHLQDY 475

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+D+ G ED++G MD KVAGT  G+TA+Q D+K+ GI   +++ ALQ++   R  IL+
Sbjct: 476 CILTDLLGIEDYMGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMEALQKSMEARFKILD 535

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M + +  SR    +  P  + + I   Q   ++G GG  +R +  +TG ++  DD+ + 
Sbjct: 536 LMDETIGASRTVRKDCWPVTDRLVIEAHQRAKLLGPGGTNLRRLYLETGVQLTPDDETSF 595

Query: 594 KIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647
           +I + S A +  A+E + ++     +P  E   IY  ++V++ D G  V  +      L+
Sbjct: 596 RIFAPSEAAMHEAKEYLENLLKAEKIPDLEFGAIYTARIVELRDTGVMVTLYPSMPPTLL 655

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+
Sbjct: 656 HNSQLDQRKIAHPSALGLQVGAEIQVKYFGRDPVSGYMRLSRKVL 700


>gi|325186086|emb|CCA20587.1| polyribonucleotide nucleotidyltransferase putative [Albugo
           laibachii Nc14]
          Length = 826

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/715 (35%), Positives = 392/715 (54%), Gaps = 52/715 (7%)

Query: 15  PLKL---------ETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           PLKL           G  AR +DG V+ T G+ V+L T V     K G+DF PL V+Y+ 
Sbjct: 94  PLKLLGSLDKPTYSIGEFARLADGGVMTTCGKCVILTTAVSQSGRKKGKDFLPLMVDYRV 153

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G IP    R+E   ++ EIL SR+IDR IRPLF K +  ETQ+I  V  +D ++ 
Sbjct: 154 KYYASGIIPDTARRKEFAGSDEEILQSRVIDRVIRPLFPKGFLEETQIIATVHSYDPDND 213

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDA 184
             V+++ + SAAL  S +P++GPV   +V  ++GQ VLNP   + +  +L++  +G Q  
Sbjct: 214 SLVLAINSTSAALATSDIPWDGPVGCVRVVQVDGQLVLNPTESQKEAATLNILYAGNQKR 273

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
            +M+E E  Q+ E  + +A+ F H+    V++A  +L K+  KE    DS    K  +E 
Sbjct: 274 TIMIEAEGEQIDEKRLSEALRFAHDGVADVLKAQRELIKLHGKEKRQYDSFTIDKTLKEQ 333

Query: 245 SQMI-----------KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           ++ I            +D + +    EK+V  K I  L+ +       +   +++     
Sbjct: 334 AKKIGLQDAVQAIQNTKDTKKARQNAEKHVFGKIISVLRDQF------KDRQYDDQLFTI 387

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
              D     +R  +++++ R DGR    +R I+A+  +L   HGS++F RGDTQA+  VT
Sbjct: 388 AAHDTFELALRDQIMNQR-RFDGRPLAQIRQINARTSILPMAHGSAVFSRGDTQALCSVT 446

Query: 354 LGT-----REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           LG+     R     +D    ++    ++HY F P    E  R+G  +RR +GHG LA +A
Sbjct: 447 LGSLDQGLRLRSATIDPSDESEYKHAILHYEFPPYCVNETGRLGGINRRMVGHGALAEKA 506

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           I P+LP   +FPYT+R+ SEIT SDGSSSMAT+CG SLAL+DAGVPI  P+AGI++GLV 
Sbjct: 507 ILPILPSIEEFPYTIRMTSEITGSDGSSSMATICGVSLALLDAGVPIEAPIAGISVGLVS 566

Query: 469 DGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           +  +       + +++DI G EDH G MDFKVAGT  GITA+Q+D+KI G+  +++  ++
Sbjct: 567 EPRESSSRFGKYRLVTDILGSEDHYGDMDFKVAGTRKGITALQLDVKIPGVPPSVLFESI 626

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPR------VEIMAIPPDQIRNVIGMGGKVIR 575
           ++A+  R  IL+ M + L++ R  L     +      +E+  IP   IR +IG  G  IR
Sbjct: 627 EKAREARYQILDSMDQTLAKPRDTLKNSASQTGEANIMEVFKIPSTSIRYLIGKAGSNIR 686

Query: 576 GIVEQTGAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMD 632
            + + TG  ++ID  DGTV++       +E A+ +I   TD    ++   Y  +V ++MD
Sbjct: 687 SMEKSTGCTISIDRYDGTVRVTGPP-GLVENAKNLIVEFTDGTFFKIGDTYTMKVAELMD 745

Query: 633 FGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FGA +     G     +HIS+LS ++       +K GD +    ++    GK+ +
Sbjct: 746 FGASLESTRPGKHRAFIHISELSLQQSQDIRQHLKIGDEIKAVCIEAGISGKMSV 800


>gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
 gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
          Length = 765

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 253/706 (35%), Positives = 400/706 (56%), Gaps = 36/706 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++L +G++A+ +DG+ +   G+T V+ T V  ++      F PL V+Y+++  A G+I
Sbjct: 36  RKMELSSGKLAKFADGSAVVQLGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAAGRI 94

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P ++++  
Sbjct: 95  PTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNDPDILAING 154

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG-TQDAVLMVELE 191
           ASAAL LS +P+ GP+   +V  ++G+ V+NP R +    +L+L V+G  Q+ V+M+E  
Sbjct: 155 ASAALALSDIPWNGPIGAVRVGLVDGETVINPTRKEMASSTLNLVVAGAAQNQVVMLEAT 214

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKDFSKLEE--EMSQ 246
           A  + +     AI  G  + + +I+ I +L     KE  V+     K F   EE  E+++
Sbjct: 215 AENILQQDFCHAIKVGVKQTQHIIQGIQQL----VKERGVVKRTVQKLFLAPEEIVELAK 270

Query: 247 MIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
            +  +   + F     +K  R + I+ ++ +       +       EI+  F  +   + 
Sbjct: 271 KLASNKIYAVFTDSSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNVVSKDIF 330

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L++  R DGRD  ++RDI  +V + +  HGS+LF RG TQ +  VT  + E     
Sbjct: 331 RNLVLNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSLESSVKS 390

Query: 364 D----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           D    ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA+ PV+PQ   F
Sbjct: 391 DVISTAVSGIKDKNFMLHYEFPPYATNEIGKVTVMNRRELGHGALAERALKPVIPQ--DF 448

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------DGDD 472
           P+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GLV        D +D
Sbjct: 449 PFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQGKGDIED 508

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G ED+ G MDFK+AGT+ GITA+Q+D+K+ GI   I+V A+QQA   +  IL
Sbjct: 509 YRLLTDILGIEDYYGDMDFKMAGTNKGITALQVDLKLPGIPIKIVVEAIQQATAAKREIL 568

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M++ L++ R    E  P VE + +P  +    +G G   ++ +  QTG  V+  D+ T
Sbjct: 569 QIMNQTLAKPRPNRKESGPVVETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVSQLDEET 628

Query: 593 VKIASSSLAEIEAAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH-FCGARDGL 646
             + + +   +  ARE I  I  D  EVN     IY   + ++ D G  V  +      L
Sbjct: 629 YSVFAPTPGAMHEAREFIGEICKDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNMTPVL 688

Query: 647 VHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
           +H SQL   ++   S +  E G  + VK    D   G+++LS K++
Sbjct: 689 LHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKIL 734


>gi|109948073|ref|YP_665301.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           acinonychis str. Sheeba]
 gi|123362511|sp|Q17VM4|PNP_HELAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109715294|emb|CAK00302.1| polyribonucleotide nucleotidyltransferase [Helicobacter acinonychis
           str. Sheeba]
          Length = 688

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 257/696 (36%), Positives = 392/696 (56%), Gaps = 57/696 (8%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  ++L   G+T++LA+V  +R L   +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLLYRLGKTIILASVCVERELV-SEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV-VSMVAASAALML 140
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V     A++A  + 
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQ 194
              PF+  V   ++  I+ ++++NP     +Q SLDLFVSGT++++ M+E+ +     N 
Sbjct: 138 HAAPFKS-VSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNA 196

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKE 250
           L E ++L+A+               +LA+   KE   +  + F+  +  +    SQ I  
Sbjct: 197 LEEPLMLEAL---------------ELAQKSLKETCTLYEETFTPHQNALLFKESQGIVF 241

Query: 251 DLRVSCFIPEKYVR----------CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           + R+   +  +Y              + +++  ++    S  HS +N  EI    E ++ 
Sbjct: 242 NERLLDLLKNQYFNEIIKGIESSALSERENVFNEIARKISEAHSEFNLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR IS +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIRDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKDQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D+ ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   I+   L QAKR R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQTLLQAKRVREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIAS 597
             +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  
Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMG 597

Query: 598 SS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +    L   E     + S+    E   ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQH 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +VA     +KEGD++  +++ F ++GKI L +
Sbjct: 658 MERCQVA-----LKEGDSIRCRVISF-NKGKIALDL 687


>gi|260804641|ref|XP_002597196.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
 gi|229282459|gb|EEN53208.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
          Length = 723

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 266/712 (37%), Positives = 398/712 (55%), Gaps = 47/712 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +++ TG+ AR +DG  +   G+T  + T V  R+      F PLTV+Y+++  A G+I
Sbjct: 12  RVMRISTGKFARFADGCAVVEIGDTSAMVTAV-SRTRPSSAGFLPLTVDYRQKAAAAGRI 70

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRRE   T+ EIL+SR+IDRSIRPLF   Y  ETQVI N++  D  + P + S+  
Sbjct: 71  PTTHLRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPDIASING 130

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQ-DAVLMVELE 191
           AS AL LS  P+ GP+   +V  ++ +YV+NP R    +  L+L V+G + + V+M+E  
Sbjct: 131 ASTALALSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLNLVVTGAERNLVVMLEGS 190

Query: 192 ANQLSEDVVLD----AIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE---EEM 244
           A    E+V+L     AI  G  E + +I  I  L K   KE      K F+  E   E+ 
Sbjct: 191 A----ENVLLPDFQRAIKTGIKETQKIIRGIQTLQKEIGKEKRT-PPKLFTPPEEILEQA 245

Query: 245 SQMIKEDLRV--SCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSSWNEGEIVSVFEDI 298
            Q+  E L+V  +     K+ R   + +++    +K+   F  E   +   E +SV   I
Sbjct: 246 RQLATERLQVVFTDATHHKFSRDNAVQEIRAEVEQKLKELF-PEAEPFMINESISV---I 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +V R ++LD   R DGRD  ++RDIS  V L +  HGS+LF RG TQ +  VT  +++
Sbjct: 302 TKQVFRNLILDTYQRCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQ 361

Query: 359 DEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               +D     L G ++ DFM+HY F P AT E  R+ + SRRE+GHG LA  A+ PV+P
Sbjct: 362 ASLKMDPIAEILGGVKQKDFMLHYVFPPYATNETGRVSSNSRRELGHGALAENALKPVVP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--- 471
             + FP+T+R+ +E+ ES+GSSSMA+ C  SLALMDAGVPIS PVAG+A+GLV   D   
Sbjct: 422 --SDFPFTIRLTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNN 479

Query: 472 -----DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
                D+ +L+DI G ED++G MDFK+AGT  G+TA+Q D+K+ G+   I++ A QQA  
Sbjct: 480 PTEIQDYKLLTDILGIEDYMGDMDFKMAGTKKGVTALQADIKLPGLPLKIIMEATQQATM 539

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            +  I+N M++ L++ R    E+ P  E + +P  +    +G GG  IR I  +TG  + 
Sbjct: 540 AKSDIINIMNRALAKPRNTRKEYGPVSEQLKVPMAKRAQFVGPGGYNIRKITAETGVTIT 599

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD---VPEVN--KIYKGQVVKVMDFGAFVH-FC 640
             D+ T  + + + A +  ARE I  +      P+++   IY   + ++ + G  V  F 
Sbjct: 600 QVDEETFSVFAPNTAAMNEAREEIDQLLKDKREPQLDFGAIYTATITEIRESGVMVKLFP 659

Query: 641 GARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
             +  L+H SQL   RV+  S +    G  + VK    D   G ++LS KV+
Sbjct: 660 TMQPTLLHNSQLDHRRVSHPSALGFDVGQEMSVKYFGRDPATGMMRLSRKVL 711


>gi|116063353|gb|AAI23081.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 789

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/711 (35%), Positives = 400/711 (56%), Gaps = 31/711 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G++ V+ T V  R+      F PL V+Y+E+
Sbjct: 53  VTVDLGARKLEISSGKLARFADGCAVLKLGDSSVMVTAV-SRTKPSPSQFMPLVVDYREK 111

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           + A G+IP  +LRRE   T +EIL SR+IDRS+RPLF   Y  ETQ++ N++  D  + P
Sbjct: 112 SAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKP 171

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS-GTQDA 184
            V+++  ASAAL LS +P+ GPV   +V  ++G++++NP   E   S L+L ++ G Q  
Sbjct: 172 DVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLVIAGGVQSQ 231

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LE 241
           ++M+E  A  + +     A+  G    + +I+ I +LAK   KE   I  K F     + 
Sbjct: 232 IVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAKEHGKEKRTIQ-KIFQAPVDIV 290

Query: 242 EEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           E   Q   E +    S F  +K  R + I+ ++ +               EI+  F  + 
Sbjct: 291 ESARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETLRERFPDAEPFEIMEAFSAVS 350

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +V R ++L++  R DGRD  ++R+I+ +V L +  HGS+LF RG TQ +  VT  + E 
Sbjct: 351 KEVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIES 410

Query: 360 EQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
               D    +LSG +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+ PV+P+
Sbjct: 411 SMKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALRPVIPK 470

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------KD 469
              FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GL+      K+
Sbjct: 471 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDKN 528

Query: 470 GD--DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           G+  D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+KI G+   I++ A+QQA   
Sbjct: 529 GEIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQADIKIPGLPLKIVMEAIQQATVA 588

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           +  I+  M+KV+S+ R    E +P  E + +P  +    +G GG  ++ I  +TG  V+ 
Sbjct: 589 KKEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRFVGPGGYNLKKIQAETGVTVSQ 648

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCG 641
            D+ T  + + + + +  ARE I  I         E   +Y   + ++ D G  V  +  
Sbjct: 649 IDEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPN 708

Query: 642 ARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
               L+H SQL   ++   S +  E G  + VK    D   G+++LS KV+
Sbjct: 709 MTPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDPTDGRMRLSRKVL 759


>gi|62859375|ref|NP_001017033.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
 gi|89267966|emb|CAJ81388.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 789

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/711 (35%), Positives = 399/711 (56%), Gaps = 31/711 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G++ V+ T V  R+      F PL V+Y+E+
Sbjct: 53  VTVDLGARKLEISSGKLARFADGCAVVKLGDSSVMVTAV-SRTKPSPSQFMPLVVDYREK 111

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           + A G+IP  +LRRE   T +EIL SR+IDRS+RPLF   Y  ETQ++ N++  D  + P
Sbjct: 112 SAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKP 171

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS-GTQDA 184
            V+++  ASAAL LS +P+ GPV   +V  ++G++++NP   E   S L+L ++ G Q  
Sbjct: 172 DVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLVIAGGVQSQ 231

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---LE 241
           ++M+E  A  + +     A+  G    + +I+ I +LAK   KE   I  K F     + 
Sbjct: 232 IVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAKEHGKEKRTIQ-KIFQAPVDIV 290

Query: 242 EEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           E   Q   E +    S F  +K  R + I+ ++ +               EI+  F  + 
Sbjct: 291 ESARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETLRERFPDAEPFEIMEAFSAVS 350

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             V R ++L++  R DGRD  ++R+I+ +V L +  HGS+LF RG TQ +  VT  + E 
Sbjct: 351 KDVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIES 410

Query: 360 EQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
               D    +LSG +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+ PV+P+
Sbjct: 411 SMKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALRPVIPK 470

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------KD 469
              FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GL+      K+
Sbjct: 471 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDKN 528

Query: 470 GD--DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           G+  D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+KI G+   I++ A+QQA   
Sbjct: 529 GEIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQADIKIPGLPLKIVMEAIQQATVA 588

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           +  I+  M+KV+S+ R    E +P  E + +P  +    +G GG  ++ I  +TG  V+ 
Sbjct: 589 KKEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRFVGPGGYNLKKIQAETGVTVSQ 648

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCG 641
            D+ T  + + + + +  ARE I  I         E   +Y   + ++ D G  V  +  
Sbjct: 649 IDEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPN 708

Query: 642 ARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
               L+H SQL   ++   S +  E G  + VK    D   G+++LS KV+
Sbjct: 709 MTPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDPTDGRMRLSRKVL 759


>gi|317011412|gb|ADU85159.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SouthAfrica7]
          Length = 688

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 261/696 (37%), Positives = 395/696 (56%), Gaps = 57/696 (8%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL LS
Sbjct: 78  GRAQDFEILTSRIIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137

Query: 142 GL-PFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQ 194
            + PF+  V   ++  ++  +++NP     +Q SLDLFVSGT++++ M+E+ +     N 
Sbjct: 138 HVAPFKS-VNACRIARVDNAFIINPSASLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNA 196

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKE 250
           L E ++L+A+               +LA+   KE   +  + F+  + E+    SQ I  
Sbjct: 197 LEEPLMLEAL---------------ELAQKSLKETCTLYEETFTPYQNELLFKESQGIVF 241

Query: 251 DLRVSCFIPEKYVR----------CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           + R+   +  +Y              + +++  ++    S  HS +   EI    E ++ 
Sbjct: 242 NERLLDLLKNQYFNEIIKGIESSALSERENVFNEIARKISEAHSEFGLEEIEWSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAKR R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKRAREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIAS 597
             +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  
Sbjct: 539 KEKIVINFSHL-PMTEIFNVAPDKIIEIIGQGGRVIREIVERFEVKIDLNKPSGEVKIMG 597

Query: 598 SS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +    L   E     + S+    E   ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQH 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +VA     +KEGD++  +++ F ++GKI L +
Sbjct: 658 MERCQVA-----LKEGDSIRCRVISF-NKGKIALDL 687


>gi|332674015|gb|AEE70832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 83]
          Length = 688

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 260/710 (36%), Positives = 399/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  + F+  
Sbjct: 183 NMMEMRSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  + GLL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDRAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K
Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|301118164|ref|XP_002906810.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262108159|gb|EEY66211.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 893

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 270/751 (35%), Positives = 403/751 (53%), Gaps = 91/751 (12%)

Query: 21  GRIARQSDGAVLATYGETVVLATVVY-----DRSLKDG---QDFFPLTVNYQERTYAVGK 72
           G++A+ +DGAVLA+ G TV+L TVV      + S+  G   +DF PLTV+++ +++AVG 
Sbjct: 88  GKLAKLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSHAVGL 147

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP    RRE   ++ E+L SR++DR+IRPLF + Y   TQV+  V  +D  + P VV++ 
Sbjct: 148 IPDNQKRREFTGSDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLVVAVN 207

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           +ASA L +S +P++GPV   +V  ++GQ V+NP   + +  ++D+  +GT +  +MVE  
Sbjct: 208 SASAVLSMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAGTAEHAIMVEAS 267

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQ 246
            ++++E  + +A+   H      IE   KLA    K      P+ I  + ++K EE + +
Sbjct: 268 GDEVTEARLDEALDLAHTNAVSAIEEQKKLAAEHGKTKREYSPLFIAPEVWAKAEE-LGR 326

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS----YFSSEHSSWNEGEIVSVFEDIQAKV 302
              E L  S  +  K  R +   ++  KM++    +F++ +   ++  I     D   +V
Sbjct: 327 ADAEALIASGRV-NKLARQEGEREVYNKMLTGMRQHFATANPPVDDAAIQRAAHDTFQRV 385

Query: 303 VRTVML--------DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +R  +L        +K VR+DGR    VR +  +  +L   HGSSLF RG+TQ +  VTL
Sbjct: 386 LRERILTIAKETKKNKPVRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSVTL 445

Query: 355 GT-----------REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G             E  +  +  +       M+HY F P    E  R+G  +RR IGHG 
Sbjct: 446 GPLERGIRLRGALHEAREQAERDAPAPFKHAMLHYEFPPFCVNETGRVGGTNRRMIGHGA 505

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +A+ P+LP   +FPYT+R+ SE+  SDGSSSMATVCG SLALMDAGVP+ + VAGIA
Sbjct: 506 LAEKAVLPILPSITEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRRAVAGIA 565

Query: 464 MGLVKDGDDFI------------ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI-G 510
           +GLV  GD F             +++DI G EDH G MDFKVAGT SG+TA+Q+D+K+ G
Sbjct: 566 IGLVTAGDPFACQEKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSGVTALQLDVKLPG 625

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL---GEFTPRVEI-MAIPPDQIRNV 566
           G+   ++   L++AK  RLHIL  MS  LSE R  L   G   P V I   I  + I  +
Sbjct: 626 GVPLFVLKEGLREAKHARLHILRRMSNELSEPRTTLKSSGSALPNVSIECVIATNLIGAL 685

Query: 567 IGMGGKVIRGIVEQTGAKVNIDD--DGTVKIASSSLAEIEAAREMIRSI----------- 613
           IG+GG  IR +  +    V+I D  +G V++  ++  + E AR+ I++            
Sbjct: 686 IGVGGSNIRDLESRFNVSVSIVDRREGIVRVVGAA-GDAEKARDWIQTELAGFASSGPRG 744

Query: 614 -----------TDVPEVNK----------IYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                       D    NK           Y   V +VMDFGA +     + G VHIS+L
Sbjct: 745 SNGNDSNSSRDNDSQGSNKDRTFFFRKGERYTMHVKQVMDFGAILEASSGQRGFVHISEL 804

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S ++V+   DVV EG  +  + L     GK+
Sbjct: 805 SRDKVSNIHDVVSEGQEMEFECLQDGASGKM 835


>gi|217034082|ref|ZP_03439503.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
 gi|216943477|gb|EEC22931.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
          Length = 688

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 258/710 (36%), Positives = 398/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKAEEFALKQVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMHSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFGEIIKGIESSALSERENVFNEIAGKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  + GLL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LG   D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGADNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K
Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLNQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|289804468|ref|ZP_06535097.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 362

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/356 (54%), Positives = 261/356 (73%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT 
Sbjct: 4   IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 63

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   
Sbjct: 64  RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 123

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LS
Sbjct: 124 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 183

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M +
Sbjct: 184 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 243

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA+
Sbjct: 244 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 303

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +   + + A   I  IT   EV +IY  +V +++DFGAFV   G ++GLVHISQ++
Sbjct: 304 TDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIA 359



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 22/192 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---------VYDRSLKDGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T          V D  + +  D F    N+ 
Sbjct: 29  RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFP 87

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
              Y+VG+   G +     P   EI   R+  R +  +     K    V +     +   
Sbjct: 88  --PYSVGET--GMV---GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 140

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDLFVS 179
           S  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L DED  G +D  V+
Sbjct: 141 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA 200

Query: 180 GTQDAVLMVELE 191
           G++D +  ++++
Sbjct: 201 GSRDGISALQMD 212


>gi|32266093|ref|NP_860125.1| polynucleotide phosphorylase/polyadenylase [Helicobacter hepaticus
           ATCC 51449]
 gi|81666186|sp|Q7VIL0|PNP_HELHP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|32262142|gb|AAP77191.1| polyribonucleotide nucleotidyltransferase [Helicobacter hepaticus
           ATCC 51449]
          Length = 709

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/717 (34%), Positives = 406/717 (56%), Gaps = 49/717 (6%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           +++E+     +     +A+ ++G +L   G +V+LA+V    + K   +F PL+V Y E+
Sbjct: 4   IKLEFENLSEQYSFNYVAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEK 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA  K P G+++RE +P+E EIL SR+IDR++RPLF K Y   T +++ V+ +D +S  
Sbjct: 64  TYANNKFPSGFIKREGKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVVMVLSYDGKSDL 123

Query: 127 HVVSMVAASAALMLSGLPFEG----PVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
            + ++ AA+ AL +S LP E      V G ++   +G +++NP +++  +  L+LFVSG 
Sbjct: 124 QLNALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNLFVSGR 183

Query: 182 QDAVLMVELE-------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
            D +LM+E++       AN+LSE+  L+A+    N  K   +   +      K P   +S
Sbjct: 184 DDELLMIEMKSIRTAQGANELSEENFLEALECAKNYIKNATQTYHQQFAPYKKSPFAFES 243

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYV----RCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            +  +L+E++  +I+           K++    R  Q+  L K++V     E     +  
Sbjct: 244 AN-DELDEQLLNIIQTHYHTPITEAIKHMAKSERHTQLKALIKQVVRECEIEDEKKVQEH 302

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I++     + K+VR ++L   +R DGR  + VR IS Q  +L   HGS LF RG TQA+V
Sbjct: 303 IMAY----KRKLVREMILQSHIRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALV 358

Query: 351 VVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
             T+G   D Q  + L      +  F+ HYNF   + GE S +G+  RRE+GHG LA+RA
Sbjct: 359 SATIGGDNDAQNYEMLGSKNALKKRFLFHYNFPSFSVGEASMIGSVGRRELGHGNLAKRA 418

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +H  + +  +   T+R+VSEI ES+GSSSMA+VCG SLAL   G+ +   +AG+AMGLV 
Sbjct: 419 LHSSVQEQDK---TIRLVSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVT 475

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
             +   IL+DISG EDH G MDFKVAG   GI+AMQMD+K+GGI++ I+  AL QAK  R
Sbjct: 476 QDEQCAILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGITQEILCQALFQAKEAR 535

Query: 529 LHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
             IL  M +  + +++ L +   P+ E   IPP +I  VIG GG+VI+ I+E+   +V+I
Sbjct: 536 EQILAIMEE--ARAKIVLNDVILPKSESFMIPPHKIVEVIGAGGRVIKDIIERF--EVSI 591

Query: 588 D---DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK--------------GQVVKV 630
           D   + G V +++S++  ++ A+  I  +       K Y+              G++ K+
Sbjct: 592 DLARESGMVSVSASNVENLQKAKTFILQLVSSAGTKKEYEKVDWESYAVGERFVGKIKKI 651

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +DFG FV      DGL+HIS+++ ++  + S++      +  ++L   ++ K++L +
Sbjct: 652 VDFGIFVELPRGGDGLIHISKITKDKTQQLSEIFHNVSELECEILS-QNKNKVELGL 707


>gi|312380418|gb|EFR26416.1| hypothetical protein AND_07550 [Anopheles darlingi]
          Length = 738

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 248/705 (35%), Positives = 396/705 (56%), Gaps = 33/705 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +++ +G+ AR +DG  + T G+T V+ T V  R       F PL V+Y++++ A G+I
Sbjct: 7   RVVRISSGKYARFADGCAVVTIGDTAVMVTAVA-RQKSQNTSFLPLVVDYRQKSAAAGRI 65

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRRE  P+E EIL +R++DRSIRPLF   ++ +TQ++ N++  D  + P V ++  
Sbjct: 66  PTNFLRRELGPSEKEILSARLVDRSIRPLFPADFRLDTQIVCNMLAIDSSNPPDVQAING 125

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMVELE 191
           ASAAL LS +P+ GPV   ++  ++ + ++NP   E Q  +LDL V+ T Q+ V+M+E  
Sbjct: 126 ASAALALSDIPWNGPVGAVRLGLVDNEVIVNPTRREMQLSALDLVVTATRQNLVVMLEGR 185

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQ 246
            N ++E+ +  AI  G  E + +I  I +L K   K     EP     ++ +     M++
Sbjct: 186 GNVVNENEIRMAIKRGTKEAQLIINGIERLQKTHGKAKRPIEPSPTVDEEIAGAVRTMAE 245

Query: 247 M-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           M ++E  R   F  +K+ R + +   +   +    S + + + G I   F      V R 
Sbjct: 246 MRLREIFR--DFTHDKFSRDQAVSKTRTDTIDKVWSSYPTADPGLISEAFNKFTRSVFRE 303

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L+  VR DGR  + +R IS  V L +  HGS+LF RG TQ    V L + E    +D 
Sbjct: 304 MLLEDGVRCDGRGLDDLRPISCSVNLHKPLHGSALFQRGQTQVFSTVALDSPESALRLDP 363

Query: 366 LS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++    G +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P  A+ P+
Sbjct: 364 VTSLDAGMKSKNFFLHYEFPPYATGETGKIGPIGRREIGHGALAEKGLVPIIP--AEHPF 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DF 473
           T+R+ SE+ ES+GSSSMATVC  S+ALMDAGVP+++  AG+A+GLV   +        D+
Sbjct: 422 TIRLTSEVLESNGSSSMATVCAGSMALMDAGVPVTEAAAGVAIGLVTKYENNDTKHLLDY 481

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSD+ G ED++G MD KVAGT  GITA+Q D+KI GI   +++ ALQ++   R  IL+
Sbjct: 482 RILSDLLGIEDYMGDMDMKVAGTRRGITAIQADLKIPGIPLKVVMEALQKSMEARFKILD 541

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M   +  +R    +  P  + + I P Q   ++G GG  +R +  +TG ++  +D+ + 
Sbjct: 542 IMDGTIGATRTIKKDCWPVTDRLVIEPSQRSRLLGPGGVNLRRLYLETGVQLTQEDETSF 601

Query: 594 KIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647
           +I + S A +  A+E +  +     +P  E   IY  ++V++ D G  V  +      L+
Sbjct: 602 RIFAPSEAAMHEAKEHLEELLKTEKIPDLEFGAIYTAKIVELRDTGVMVTLYPSMPPTLL 661

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           H SQL   ++A  S + +  G  + VK    D   G ++LS KV+
Sbjct: 662 HNSQLDQRKIAHPSALGLPVGSEIQVKYFGRDPVSGFMRLSRKVL 706


>gi|307637887|gb|ADN80337.1| Poly ribonucleotide nucleotidyl transferase [Helicobacter pylori
           908]
 gi|325996485|gb|ADZ51890.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           2018]
          Length = 688

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 253/710 (35%), Positives = 401/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++ K++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLTNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR IS +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           KR R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K
Sbjct: 525 KRAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    ++    ++  +  + +      ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKECVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   ++KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVILKEGDSIRCRVISF-NKGKIALDL 687


>gi|91085763|ref|XP_974155.1| PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum]
 gi|270009999|gb|EFA06447.1| hypothetical protein TcasGA2_TC009329 [Tribolium castaneum]
          Length = 747

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 402/709 (56%), Gaps = 40/709 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR LK+ TG+ AR +DG  +AT G+T V+ T V  ++     +F PL V+Y++++ A G+
Sbjct: 43  GRSLKISTGQYARLADGCAVATLGDTSVMVTAV-SKTKPSPSNFLPLVVDYRQKSAAAGR 101

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  + RRE  P+E EIL SR+IDRS+RPLF + +  ETQV+ N++  D  ++P VVS+ 
Sbjct: 102 IPTNFFRRELGPSEKEILTSRLIDRSLRPLFPERFAYETQVVCNMLAVDGVNNPDVVSIN 161

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVEL 190
           AASAAL LS +P+ GPV   ++  I+ + ++NP   E Q S L+L +S T ++ V+M+E 
Sbjct: 162 AASAALALSDIPWNGPVGAVRLGMIDNEVIINPTRKELQSSILNLVLSATRKNLVVMLEG 221

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
            AN + +  +L A+  G  E + ++ +I KL K   K      +K   +   E S  + E
Sbjct: 222 NANNILQQDLLKAVKLGTKEVQQIVASIEKLQKSYGK------TKRNIEYPLEASHEVYE 275

Query: 251 DLR----------VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            LR          ++ +  +K  R   + D++  +     S  S  +       +  I  
Sbjct: 276 ALRSLSEMRVRKILTDYSLDKLGRDNALTDVRSDVTEKIKSNFSDLDMSVFSETYNKIVK 335

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++ R ++ ++  R DGRD + +R+I  +V L +  HGS++F RG TQ    VTL + +  
Sbjct: 336 QIFRDLVFEEGKRCDGRDYDQLRNIECKVNLYKPLHGSAMFQRGQTQVFCTVTLDSHDSA 395

Query: 361 QYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             +D +    SG +  +F +HY F P AT E  R+G   RREIGHG LA + + P +P  
Sbjct: 396 MKLDPMAMLISGVKEKNFFLHYEFPPFATKETGRIGPIGRREIGHGALAEKGLTPSIPD- 454

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+GSSSMA+VCG +LALMDAGVPI  P AG+A+GL+   D     
Sbjct: 455 -DFPFTIRLTSEVLESNGSSSMASVCGGTLALMDAGVPIVAPAAGVAIGLITRYDDEKAN 513

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D+ +L+D+ G ED++G MDFK+AGT  GITA+Q D+KI G+   I++ ++Q+A   + 
Sbjct: 514 ITDYRLLTDLLGIEDYMGDMDFKIAGTKKGITALQADIKIPGLPLKIVMESIQKATEAKQ 573

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M + + + R    +  P  E + +   +   ++G+GG  ++ ++ +TG +V+  D
Sbjct: 574 KILQIMHECIDKPRTVKKDNWPVSEKLKVEAHKRAKLVGVGGINLKKLLAETGVQVSAID 633

Query: 590 DGTVKIASSSLAEIEAAREMIRSI---TDVP--EVNKIYKGQVVKVMDFGAFVH-FCGAR 643
           D T +I + + + ++ A+E I  +     VP  E   IY   +V++ D G  V  + G  
Sbjct: 634 DTTFEIFAPNQSAMDEAQEYINKLLTAEKVPDLEFGGIYTATIVELRDIGVMVTLYPGMP 693

Query: 644 DGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
             L+H SQL   +VA  S +  E G  + VK    D   G ++LS KV+
Sbjct: 694 PALLHNSQLDQRKVAHPSALDLEVGQEIQVKYFGRDPVSGLMRLSRKVL 742


>gi|188528001|ref|YP_001910688.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Shi470]
 gi|257096697|sp|B2UUX6|PNP_HELPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188144241|gb|ACD48658.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Shi470]
          Length = 688

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 257/695 (36%), Positives = 393/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R    G+DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCVERE-PVGEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL LS
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDVENDLQVSALNAASAALFLS 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I  ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLKEIELSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRCMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKDQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   +AG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLIAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIKCRVISF-NKGKIALDL 687


>gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia
           guttata]
          Length = 936

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 402/712 (56%), Gaps = 34/712 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V +E  GR ++L +G++A+ +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 200 VTVEVGGRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 258

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P
Sbjct: 259 AAAAGRIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNDP 318

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++++  ASAAL LS +P+ GP+   +V  ++G+ V+NP R +    +L+L V+G     
Sbjct: 319 DILAINGASAALALSDIPWNGPIGAVRVGLVDGETVINPTRKEMSSSALNLVVAGALHSQ 378

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           V+M+E  A  + +     AI  G    K   + I  + ++  ++ +V  +  K F   EE
Sbjct: 379 VVMLEATAENILQQDFCHAIKVG---VKQTQQIIQAIQQLVKEQGVVKRTVQKLFIAPEE 435

Query: 243 --EMSQMIKEDLRVSCFI---PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             E+++ +  +   + F     +K  R + I+ ++ +       +       EI+  F  
Sbjct: 436 IVELAKKLASNKIYAVFTDSSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNV 495

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +   + R ++L++  R DGRD  ++RDI  +V + +  HGS+LF RG TQ +  VT  + 
Sbjct: 496 VSKDIFRNLVLNEYRRCDGRDLTSLRDIKCEVNMFRMLHGSALFQRGQTQVLCTVTFDSL 555

Query: 358 EDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           E     D    ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA+ PV+
Sbjct: 556 ESSVKSDLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGMNRRELGHGALAERALKPVI 615

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----- 468
           PQ   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GLV      
Sbjct: 616 PQ--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQG 673

Query: 469 --DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
             D +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q+D+K+ GI   I+V A+QQA  
Sbjct: 674 KGDIEDYRLLTDILGIEDYYGDMDFKMAGTNKGITALQVDLKLPGIPIKIVVEAIQQATA 733

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            +  IL+ M++ L++ R    E  P VE + +P  +    +G G   ++ +  QTG  V+
Sbjct: 734 AKREILHIMNQTLAKPRPNRKESGPVVETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVS 793

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH-FC 640
             D+ T  + + +   +  ARE I  I  D  EVN     IY   + ++ D G  V  + 
Sbjct: 794 QLDEETYSVFAPTPGAMHEAREFIGEICKDDQEVNLEFGAIYTATITEIRDSGVMVKLYP 853

Query: 641 GARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                L+HISQL   ++   S +  E G  + VK    D   G+++LS K++
Sbjct: 854 NMTPVLLHISQLDQRKIKHPSALGLEVGHEIQVKYFGRDPTDGRMRLSRKIL 905


>gi|261838537|gb|ACX98303.1| polynucleotide phosphorylase [Helicobacter pylori 51]
          Length = 688

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/710 (36%), Positives = 399/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFLINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  + GLL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDTEGDMDFKIAGNLEGITAMQMDTKMSGIPLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K
Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PATEIFNVVPDKIVEIIGQGGRVIREIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|308183320|ref|YP_003927447.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           PeCan4]
 gi|308065505|gb|ADO07397.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           PeCan4]
          Length = 688

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 253/710 (35%), Positives = 401/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIAKMDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLEAL---------------ELAQKSLKETCTLYEEAFTPY 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    S+ I  + R+   +  +Y              + +++ K++    S  HS +
Sbjct: 228 QNELLFKESEGIALNERLLDLLKNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR IS +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIQLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           KR R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K
Sbjct: 525 KRARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +     +    ++  +  + +      ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVFKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 519

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/391 (50%), Positives = 273/391 (69%), Gaps = 4/391 (1%)

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            S +  E  + I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F 
Sbjct: 21  LSAIRSEFGEAISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFG 76

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT
Sbjct: 77  EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 136

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP  
Sbjct: 137 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 196

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL
Sbjct: 197 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 256

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M+
Sbjct: 257 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 316

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI 
Sbjct: 317 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 376

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
             S    EAAR+ +  IT   E+ KIY G  
Sbjct: 377 GESKEAAEAARQRVLGITAEAEIGKIYVGNT 407



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 26/194 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLK-----DGQDFFPLTVNYQER 66
           RPL +E G + + + G+ L T GET  +V+AT+   R  +     +G+   P  ++Y   
Sbjct: 103 RPLNIEVGVLPK-THGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 161

Query: 67  TYAVGKIP--GGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDL 122
            ++VG+    GG  RRE       I   R+  RS++ +   +  +    +V+  + + + 
Sbjct: 162 PFSVGECGRMGGAGRRE-------IGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNG 214

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQ--YVLNPRL-DEDQ-GSLDLF 177
            SS  + S+  AS ALM +G+P + PV G  +  +  G+   +L   L DED  G +D  
Sbjct: 215 SSS--MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFK 272

Query: 178 VSGTQDAVLMVELE 191
           V+GT   V  ++++
Sbjct: 273 VAGTSKGVTALQMD 286


>gi|325998073|gb|ADZ50281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           2017]
          Length = 688

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/710 (35%), Positives = 401/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++ K++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLTNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR IS +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           KR R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K
Sbjct: 525 KRAREHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    ++    ++  +  + +      ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKECVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   ++KEGD++  +++ F ++GK+ L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVILKEGDSIRCRVISF-NKGKLALDL 687


>gi|317178490|dbj|BAJ56278.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F30]
          Length = 688

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 258/695 (37%), Positives = 393/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL LS
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I+ ++V+NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIDNEFVINPNASLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIVFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFGEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|297380394|gb|ADI35281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           v225d]
          Length = 688

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 258/695 (37%), Positives = 391/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL LS
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I  ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK+ R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKKAREHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
               +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  +
Sbjct: 540 ERIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|317014601|gb|ADU82037.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Gambia94/24]
          Length = 688

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/710 (36%), Positives = 400/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCTERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVGACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLKETCALYEEAFTPY 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    S+ I  + R+   +  +Y              + +++ K++    S  HS +
Sbjct: 228 QNELLFKESEGIALNERLLDLLTNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR IS +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           KR R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K
Sbjct: 525 KRARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVERFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELERYTIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   ++KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVILKEGDSIRCRVISF-NKGKIALDL 687


>gi|317180940|dbj|BAJ58726.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F32]
          Length = 688

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 257/695 (36%), Positives = 393/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQAISSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL LS
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQRSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|317182464|dbj|BAJ60248.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F57]
          Length = 688

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 258/710 (36%), Positives = 397/710 (55%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I  ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIVFNERLLDLLKNQYFGEIIKGIESSALSERENVFNEIARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKVPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K
Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PATEIFNVTPDKIVEIIGQGGRVIREIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|317177956|dbj|BAJ55745.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F16]
          Length = 688

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 396/710 (55%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ +  + HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMALSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG VIR IVE+   K
Sbjct: 525 KKAREHILKIMHEAKEKIVINFSHL-PATEIFNVAPDKIVEIIGQGGHVIREIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|210135372|ref|YP_002301811.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           P12]
 gi|257096695|sp|B6JN53|PNP_HELP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|210133340|gb|ACJ08331.1| polynucleotide phosphorylase [Helicobacter pylori P12]
          Length = 688

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/695 (36%), Positives = 393/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL L+
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L+A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLEAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQAIVLN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLTNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIEWSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKTPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK  R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKEAREHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIKCRVISF-NKGKIALDL 687


>gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus
           cuniculus]
          Length = 784

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 246/710 (34%), Positives = 402/710 (56%), Gaps = 30/710 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFSK 239
           ++M+E  A  + +     AI  G    + +I+ I +L +   +  + P  + I S +  K
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGMKHTQQIIQGIQQLVREIGVTKRTPQKLFIPSPEIVK 285

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              +++ M K     + +  +K  R + ++ ++         +    +  EI+  F  + 
Sbjct: 286 YAHKLA-MEKLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEVDPYEIIESFNVVA 344

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358
            +V R ++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E 
Sbjct: 345 KEVFRNIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLES 404

Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
               ++   +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+
Sbjct: 405 SIKSDRITTAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIPK 464

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK------- 468
              FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS PVAG+A+GLV        
Sbjct: 465 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSPVAGVAIGLVTKNNSEKG 522

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           D +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +
Sbjct: 523 DIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 582

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL  M+K LS+ R    E  P +E + +P  +    IG GG  ++ +  +TG  ++  
Sbjct: 583 KEILQIMNKTLSKPRASRKENGPIIETVQVPLSKRAKFIGPGGYHLKKLQAETGVTISQV 642

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642
           D+ T  I + + + +  ARE I  I         E   +Y   + ++ D G  V  +   
Sbjct: 643 DEETFSIFAPTPSAMHEAREFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNM 702

Query: 643 RDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
              L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 703 TAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|308063994|gb|ADO05881.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Sat464]
          Length = 688

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/695 (36%), Positives = 392/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL LS
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I  ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    +Q I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKENQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  ++R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIKDRIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKDQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIKCRVISF-NKGKIALDL 687


>gi|317012994|gb|ADU83602.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Lithuania75]
          Length = 688

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 398/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  K F+  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEKAFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K
Sbjct: 525 KKAREHILKIMHEAKEKIVINFSNL-PATEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|317009891|gb|ADU80471.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           India7]
          Length = 688

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 253/695 (36%), Positives = 392/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCAERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL L+
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I  ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 RIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQGIVFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIGLSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  + GLL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKEARKHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 SLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                +    ++  +  + +      ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVFKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|254779759|ref|YP_003057865.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           B38]
 gi|254001671|emb|CAX29876.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Helicobacter pylori B38]
          Length = 688

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 252/696 (36%), Positives = 392/696 (56%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCIERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+       K       ++      E +  +S+  + L
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESEGIA-L 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            E +  ++K           +     + +++ K++    S  HS ++  EI    E ++ 
Sbjct: 242 NERLLDLLKNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEFSLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIAS 597
             +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++   G VKI  
Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMG 597

Query: 598 SS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +    L   E     + S+    E   ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQN 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +VA     +KEGD++  +++ F ++GKI L +
Sbjct: 658 MDRCQVA-----LKEGDSIKCRVISF-NKGKIALDL 687


>gi|170039801|ref|XP_001847711.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167863390|gb|EDS26773.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 759

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/675 (35%), Positives = 384/675 (56%), Gaps = 32/675 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD--FFPLTVNYQERTYAV 70
           GR +++ +G+ AR +DG  + T G+T V+ T V  +    G +  F PL V+Y+++  A 
Sbjct: 51  GRVVRISSGKYARFADGCSVVTVGDTAVMVTAVARQKPAGGSNASFLPLVVDYRQKAAAA 110

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IP  +LRRE  P+E EIL +R++DRS+RPLF   ++ +TQ++ N++  D  + P V +
Sbjct: 111 GRIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQA 170

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMV 188
           + AASAAL LS +P+ GPV   +V  ++ + ++NP   E Q  +LDL VS T Q+ V+M+
Sbjct: 171 INAASAALSLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLVVSATKQNLVVML 230

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEE 243
           E   N ++E+ +  AI  G  E + +I  I KL K   K     EP+    ++       
Sbjct: 231 EGRGNIVNENELRMAIKKGTQEAQLIINGIEKLQKSHGKPKRALEPLPQADEEIEAAVRT 290

Query: 244 MSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           MS+M ++E  R   F  +K+ R + +   +   +    S + S +   I   F      V
Sbjct: 291 MSEMRLREIFR--DFSHDKFSRDQAVSKTRTDTIDKVWSSYPSVDPALIGECFNKFTKSV 348

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            R ++ ++  R DGR  + +R IS+ V + +  HGS+LF RG TQ    V L ++E    
Sbjct: 349 FREMVFEENRRCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALK 408

Query: 363 VDSLS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           +D ++    G +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P    
Sbjct: 409 LDPITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLLPIIPNDN- 467

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDG 470
            P+T+R+ +E+ ES+GSSSMATVC  S+ALMDAG+P+ +  AG+A+GL+        K  
Sbjct: 468 -PFTIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKHL 526

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            D+ IL+D+ G ED+LG MD KVAGT  G+TA+Q D+K+ GI   +++ +LQ+A   R  
Sbjct: 527 QDYRILTDLLGIEDYLGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFK 586

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+ M++ +S  R    +  P  + + I P Q   ++G GG  IR +  +TG +++ +D+
Sbjct: 587 ILDLMNESISTVRTLKKDCWPVTDKLQIEPHQRSKLLGPGGINIRRLYLETGVQLSQEDE 646

Query: 591 GTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFVH-FCGARD 644
              +I + S A +  A+E + ++     VP  E   IY  ++V++ D G  V  +     
Sbjct: 647 NQFRIFAPSEAAMHEAKEYLETLMKTEKVPDLEFGAIYTAKIVEMKDTGVMVTLYPSMSP 706

Query: 645 GLVHISQLSTERVAK 659
            L+H SQL   +V++
Sbjct: 707 ALLHNSQLDQRKVSE 721


>gi|313608969|gb|EFR84717.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL F2-208]
          Length = 424

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/402 (49%), Positives = 267/402 (66%)

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 1   EIIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 60

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 61  PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 120

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 121 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 180

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 181 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 240

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 241 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 300

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 301 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 360

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 361 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 402


>gi|213850433|ref|ZP_03381331.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 369

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/348 (54%), Positives = 256/348 (73%)

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQA+V  TLGT  D Q +D L G + + F+ HYNF P + GE   +G+P RREIG
Sbjct: 1   FTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIG 60

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VA
Sbjct: 61  HGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 120

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GIAMGLVK+GD++++LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +A
Sbjct: 121 GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVA 180

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  RLHIL  M + ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+
Sbjct: 181 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEE 240

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           TG  + I+DDGTVKIA++   + + A   I  IT   EV +IY  +V +++DFGAFV   
Sbjct: 241 TGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIG 300

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 301 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 348


>gi|15645827|ref|NP_208005.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           26695]
 gi|81341641|sp|O25812|PNP_HELPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2314375|gb|AAD08258.1| polynucleotide phosphorylase (pnp) [Helicobacter pylori 26695]
          Length = 688

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 257/710 (36%), Positives = 398/710 (56%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARMDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+               +LA+   +E   +  + F+  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEAL---------------ELAQKSLEETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELFFKESQGIVFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K
Sbjct: 525 KEARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL     L  + + K   V+KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGL-----LRKQNMDKCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|315587104|gb|ADU41485.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 35A]
          Length = 688

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/695 (36%), Positives = 391/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCTERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL LS
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLS 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I+ ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQKLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIEWSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +  D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEEQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK+ R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKKAREHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  +  D+I  +IG GG+VIR IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PATEIFNVTSDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RRQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|308184960|ref|YP_003929093.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SJM180]
 gi|308060880|gb|ADO02776.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SJM180]
          Length = 688

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/710 (36%), Positives = 397/710 (55%), Gaps = 55/710 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  K F+  
Sbjct: 183 NMIEMHSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEKAFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSW 286
           + E+    SQ I  + R+   +  +Y              + +++  ++    S  HS +
Sbjct: 228 QNELLFKESQGIIFNERLLDLLTNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEF 287

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +  EI    E ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG T
Sbjct: 288 SLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQT 347

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           Q++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG L
Sbjct: 348 QSLVVGVLGTDNDAQTHESLEHKIPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNL 407

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AM
Sbjct: 408 AKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAM 464

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QA
Sbjct: 465 GMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQA 524

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K
Sbjct: 525 KEARKHILKIMHEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVK 583

Query: 585 VNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFV 637
           ++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DFGAF+
Sbjct: 584 IDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFL 643

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                 +GL+    +   +VA     +KEGD++  +++ F ++GKI L +
Sbjct: 644 SLPKGGEGLLRKQNMDRCQVA-----LKEGDSIKCRVISF-NKGKIALDL 687


>gi|307183198|gb|EFN70107.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Camponotus floridanus]
          Length = 689

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/661 (35%), Positives = 378/661 (57%), Gaps = 26/661 (3%)

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
           F PL V+Y+++  A G+IP  +LRRE  PTENEIL SR+IDRSIRPLF + +  +T ++ 
Sbjct: 15  FLPLIVDYRQKAAAAGRIPTNFLRRELGPTENEILTSRVIDRSIRPLFPEGFYYDTHIMC 74

Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-L 174
           N++  D  + P V+++  ASAAL +S +P+ GPV   ++  I+ ++++NP   + Q S L
Sbjct: 75  NMLAVDGINDPDVIAINGASAALSISDIPWNGPVGAIRIGMIDNEFIINPTRRQIQDSIL 134

Query: 175 DLFVSGTQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           ++ V+ T+ + ++M+E  AN++ E  +  AI  G  EC+ ++ AI+ L K   K    I+
Sbjct: 135 NMIVTATKHNLIVMLEGSANEILEQDLKKAIKLGVKECQNIVNAIANLQKAHGKTKRNIE 194

Query: 234 S-KDFSKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
           + +  + L   + ++ +  LR   S    +K  R   I+DL+  ++    S+++  +   
Sbjct: 195 TVEQDNNLINSVKELSETKLREIFSNHAHDKISRDNAINDLRNSVIEALKSDNTDLDVKS 254

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
             ++F  I   + RT++LD  VR DGR  + +RDIS QV L    HGS++F RG TQ + 
Sbjct: 255 AENIFGKITKDLFRTLILDTDVRCDGRSPDGLRDISCQVDLFNPLHGSAVFQRGQTQVMC 314

Query: 351 VVTLGTREDEQYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            V L + E    +D++    SG +  +F +HY F P AT E   +G   RRE+GHG LA 
Sbjct: 315 TVALDSLESALKMDAMSMLISGVKEKNFFLHYEFPPYATNETGHVGRIGRREMGHGALAE 374

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +A+  +LP+   +P+T+R+ SE+ ES+GSSSMATVCG SLAL+DAG+PIS   AG+A+GL
Sbjct: 375 KALRSILPK--DYPFTIRLTSEVLESNGSSSMATVCGGSLALLDAGIPISSSAAGVAIGL 432

Query: 467 V-------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           V        D D + IL+DI G ED+LG MDFK+AGT  G TA+Q D+KI G+   I++ 
Sbjct: 433 VTKYNETNTDIDKYKILTDILGIEDYLGDMDFKIAGTKRGFTALQADVKIPGVPLKIIME 492

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
            L QA   +  I+  M+ V+   + +  +  P +E + +P  Q    +G+GG  ++ I+ 
Sbjct: 493 CLYQAIAAKREIIKIMNDVIRTPQTKKKDKMPVIENLEVPIHQRGKFLGIGGMNLKKILL 552

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFG 634
           +TG  +   D+ T  I + +   +  A+EMI +I         E   IY  ++V++ + G
Sbjct: 553 ETGVHIFPHDENTYSIFAPNENAMNEAKEMIENILQKDREPTLEFGAIYTAKIVEIREIG 612

Query: 635 AFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVVD 691
             V         L+  SQL   ++   S +  E G  + VK    D   G+I++S KV+ 
Sbjct: 613 VMVTLHSKMVPTLLPNSQLDQRKIHHPSALGLEIGQEIQVKYFGRDPASGQIRISRKVLQ 672

Query: 692 Q 692
           +
Sbjct: 673 E 673


>gi|224438200|ref|ZP_03659135.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
 gi|313144645|ref|ZP_07806838.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
 gi|313129676|gb|EFR47293.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
          Length = 704

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/700 (36%), Positives = 400/700 (57%), Gaps = 51/700 (7%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +A+ ++G+VL   G +V+LA+V  + + K   DF PL+V Y E+ YA  K P G+++RE 
Sbjct: 20  MAKAANGSVLYQNGGSVLLASVCAEENNKYDDDFLPLSVQYIEKAYASNKFPPGFVKREG 79

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +P+E EIL SR+IDR++RPLF K YK+ T ++I V+ +D +S   + ++ AASAAL +S 
Sbjct: 80  KPSEFEILTSRLIDRTLRPLFPKGYKHITSIVIWVLSYDGKSDLQLNALNAASAALYVSN 139

Query: 143 LPFE----GPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE------ 191
           LP E      V G ++   NG +VLNP +++  +  LDLFVSG  D +LM+E++      
Sbjct: 140 LPLESLKDNAVCGVRIGRKNGAFVLNPTMEQMSESELDLFVSGRGDELLMIEMKSIRSEK 199

Query: 192 -ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID----SKDFSKLEEEMSQ 246
            AN+LSE  ++ A+    +      ++  K      K+ + ID    S +   LE+    
Sbjct: 200 GANELSERDMILALESAKSYIDRATQSYHKYFAPYKKQSLAIDLSQDSLNTDLLEKIAKN 259

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA---KVV 303
              + L    F+ +   + +    +K+ M            E +I +  E I+A   K+V
Sbjct: 260 YHSQILEAITFLAKSESQMQLHSIIKQAM------RECGIEEEKIAT--EHIKAYKKKLV 311

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++++  +R DGR  + +R IS +  +L   HGS LF RG TQA+V  TLG+  D Q  
Sbjct: 312 REMIIESAIRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQALVSATLGSENDAQSY 371

Query: 364 DSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           + L      +  F+ HYNF   + GE S +G+  RRE+GHG LARRA+   L  T+Q   
Sbjct: 372 EMLGSKNALKRRFLFHYNFPGFSVGEASMIGSVGRRELGHGNLARRALESSL--TSQ-DR 428

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSMA+VCG SLAL   GV +   +AG+AMGLV  G+ + IL+DISG
Sbjct: 429 TIRLVSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGLVTQGEKYAILTDISG 488

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDH G MDFKVAG   GI+AMQMD+K+GGIS+ I+  +L QAK  R  IL     ++ E
Sbjct: 489 LEDHDGDMDFKVAGGYKGISAMQMDIKLGGISKEILEESLLQAKEAREQILG----IMEE 544

Query: 542 SRLQL---GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIAS 597
           +R ++       P+ E   I P +I  VIG GG+VI+ I+E+    ++++ + G V +++
Sbjct: 545 ARAKIVLNHSILPKSESFKIAPHKIVEVIGQGGRVIKDIIERFEVSIDLERESGIVNVSA 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKI----------YKGQVVKVMDFGAFVHFCGARDGLV 647
           S+   +  A+  I  I    + +++          + G++ K+ DFG FV      DGL+
Sbjct: 605 SNEDNLAKAKAFILEIVSGAKSDRVDWESYHVGERFVGKIKKIADFGVFVELPRGGDGLL 664

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           HIS++  ++      V++    +  ++L   ++GK++L +
Sbjct: 665 HISKIIKDKNESIHSVLQGKSELECEILS-RNKGKVELGL 703


>gi|108563579|ref|YP_627895.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPAG1]
 gi|123373705|sp|Q1CS51|PNP_HELPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|107837352|gb|ABF85221.1| polynucleotide phosphorylase [Helicobacter pylori HPAG1]
          Length = 688

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/695 (36%), Positives = 390/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++ +Q+  ++L   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVVKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL L+
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  I  ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEVFTPHQNELLFKESQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEAHSEFSLEEIEWSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK  R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 S---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               L   E     + S+    E   ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus
           norvegicus]
 gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus]
          Length = 784

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/710 (34%), Positives = 401/710 (56%), Gaps = 30/710 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V  ++      F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++++  ASAAL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DILAINGASAALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFSK 239
           ++M+E  A  + +     AI  G    + +I++I +L K   +  + P  I   S +  K
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQKIFTPSAEIVK 285

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
               ++ M K     + +  +K  R + ++ ++     +   +    ++ EI+  F  + 
Sbjct: 286 YTHTIA-MEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQLEIIESFNVVA 344

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358
            +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E 
Sbjct: 345 KEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLES 404

Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
               +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P+
Sbjct: 405 SIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPK 464

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471
              FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   +    
Sbjct: 465 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKG 522

Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
              D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   +
Sbjct: 523 EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAK 582

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL  MSK +S+ R    E  P VE + +P  +    IG GG  ++ +  +TG  ++  
Sbjct: 583 REILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQV 642

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642
           D+ T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V  +   
Sbjct: 643 DEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNM 702

Query: 643 RDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
              L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 703 TAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Pan troglodytes]
          Length = 783

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/714 (33%), Positives = 401/714 (56%), Gaps = 38/714 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP R +    +L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           ++M+E  A  + +     AI  G    + +I+ I +L K        +  +   KL    
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFTPS 280

Query: 245 SQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +++K   +++          +  +K  R + ++ ++         +    +  EI+  F
Sbjct: 281 PEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESF 340

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             +  +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  
Sbjct: 341 NVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400

Query: 356 TRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++P
Sbjct: 401 SLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP 460

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D
Sbjct: 461 VIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTD 518

Query: 472 -------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
                  D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA
Sbjct: 519 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQA 578

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  
Sbjct: 579 SVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVT 638

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH- 638
           ++  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V  
Sbjct: 639 ISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKL 698

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
           +      L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 699 YPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|261839934|gb|ACX99699.1| polynucleotide phosphorylase [Helicobacter pylori 52]
          Length = 688

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 258/714 (36%), Positives = 399/714 (55%), Gaps = 63/714 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP  +  +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPSANLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+               +LA+   KE   +  + F+  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKAL---------------ELAQKSLKETCTLYEEIFTPH 227

Query: 241 EEEM----SQMIKEDLRVSCFIPEKYV--------------RCKQIDDLKKKMVSYFSSE 282
           + E+    SQ I  + R+   +  +Y               R    +++ KK+    S  
Sbjct: 228 QNELLFKESQGIVFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKI----SEA 283

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           HS ++  EI    E ++   +R +++  K+R D R  E VR I  +  LL   H S LF 
Sbjct: 284 HSEFSLKEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFT 343

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           RG TQ++VV  LGT  D Q  +SL      +  FM HYNF P   GE S +GA SRRE+G
Sbjct: 344 RGQTQSLVVGVLGTDNDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELG 403

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VA
Sbjct: 404 HGNLAKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVA 460

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           G+AMG+V +G +  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  A
Sbjct: 461 GVAMGMVSEGQNHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQA 520

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK+ R HIL  M     +  +      P  EI  + PD+I  +IG GG+VIR IVE+
Sbjct: 521 LLQAKKAREHILKIMHGAKEKIVINFSHL-PATEIFNVVPDKIVEIIGQGGRVIREIVEK 579

Query: 581 TGAKVNIDD-DGTVKIASSS---LAEIEAAREMIRSITDVPE---VNKIYKGQVVKVMDF 633
              K++++   G VKI  +    L   E     + S+    E   ++++ + QV +++DF
Sbjct: 580 FEVKIDLNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDF 639

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           GAF+      +GL     L  + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 640 GAFLSLPKGGEGL-----LRKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens]
 gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens]
          Length = 783

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/716 (33%), Positives = 401/716 (56%), Gaps = 38/716 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V ++   R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+
Sbjct: 45  RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP R +    +L+L V+G  +
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             ++M+E  A  + +     AI  G    + +I+ I +L K        +  +   KL  
Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFT 278

Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
              +++K   +++          +  +K  R + ++ ++         +    +  EI+ 
Sbjct: 279 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 338

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F  +  +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT
Sbjct: 339 SFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398

Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
             + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+
Sbjct: 399 FDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           +PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV  
Sbjct: 459 YPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516

Query: 470 GD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            D       D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+Q
Sbjct: 517 TDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQ 576

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG
Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637
             ++  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V
Sbjct: 637 VTISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696

Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
             +      L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|145343510|ref|XP_001416364.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576589|gb|ABO94657.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 679

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 370/665 (55%), Gaps = 49/665 (7%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+ER+YA GKIP  + RRE  P E EIL  R+IDR+ RPLF K +  E  +   VM  
Sbjct: 2   VDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQCVVMAS 61

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178
           D    P V+++  ASAAL  S +P+ GP+   +V  +N   +++P  DE  +     LF 
Sbjct: 62  DGVEDPAVLAVNGASAALTASSIPWNGPIGAVRVAVVNKAIIVSPS-DEVVESSDFTLFY 120

Query: 179 SGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
           +G +   LM+E ++N+   L E +V DA+   H   + +I             P +  + 
Sbjct: 121 AGNEARALMIEAQSNKSGGLEETLVADALRKAHEAVRELIP------------PQIALAN 168

Query: 236 DFSKLEEEMSQM-IKEDLRVSCF--------------IPEKYVRCKQIDDLKKKMVSYFS 280
           +  K ++E++   +  +++ +C+              I +K+ R +++ +L+ ++V    
Sbjct: 169 EIGKPKQELAAAPVTAEMKRACYDVAKARLVALYEEHIQDKHERGRKMAELQSEVVRELM 228

Query: 281 SEHSSWNE-GEIV-----SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
             H  W E GE+      S +  +  +V+R  +LD+ VR+DGR    +R++    G +  
Sbjct: 229 DSHPEWMESGEVSEAMLGSAYFAVCGRVLRERVLDEGVRVDGRGVYELRNLDGVTGTMPI 288

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS+LF RG+TQA+  VTLG+ ED Q +D+L+G      M+HY+F   +  E    G  
Sbjct: 289 VHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGARGL- 347

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
           SRRE+GHG LA +++  V P    FP+ +R+ +E  ES+GSSSMA VC  S+ALMDAGVP
Sbjct: 348 SRREVGHGALAEKSLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVP 407

Query: 455 ISKPVAGIAMGLVKDGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           +++ V  I++GLV D D+       + ++ DI G ED LG MDFK+AGT SG+T +Q+D 
Sbjct: 408 LTEHVGAISIGLVMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGIQLDC 467

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K  GI  +I++ AL +A   R  +++ M + +SE +  + +  PR     +PP  I  +I
Sbjct: 468 KPAGIPLDILIEALDRASAARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLI 527

Query: 568 GMGGKVIRGIVEQTGAKVN-IDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKG 625
           G  G  I+ + ++TGAKV+ ++DDG + +   + A  +AA   I ++ + + EV K Y  
Sbjct: 528 GPQGSNIKALEKETGAKVSVVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYAT 587

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            V +V+ FG  +      DGL+H+S+++ E     SDV   GD V VK +  D RG IK 
Sbjct: 588 TVKEVLPFGCVLTTASGDDGLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKW 647

Query: 686 SMKVV 690
           S K +
Sbjct: 648 SRKAL 652


>gi|298735771|ref|YP_003728296.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
 gi|298354960|emb|CBI65832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
          Length = 688

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/695 (35%), Positives = 393/695 (56%), Gaps = 55/695 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ AASAAL L+
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFLA 137

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEA-----NQL 195
            +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++ M+E+ +     N L
Sbjct: 138 HIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQQLNAL 197

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM----SQMIKED 251
            E ++L A+               +LA+   KE   +  + F+  + E+    SQ I  +
Sbjct: 198 EEPLMLKAL---------------ELAQKSLKETCTLYEEAFTPHQNELLFKESQGIIFN 242

Query: 252 LRVSCFIPEKYV----------RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            R+   +  +Y              + +++  ++    S  HS ++  EI    E ++  
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKKISEAHSEFSLEEIEWSLEKVKKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q
Sbjct: 303 EIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQ 362

Query: 362 YVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q 
Sbjct: 363 THESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ- 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDI
Sbjct: 422 --VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M +  
Sbjct: 480 SGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEAK 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASS 598
            +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++   G VKI  +
Sbjct: 540 EKIVINFSHL-PTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGN 598

Query: 599 SLAEIEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
               ++    ++  +  + +      ++++ + QV +++DFGAF+      +GL     L
Sbjct: 599 KEHVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 654 RKQNMDRCQVVLKEGDSIRCRVISF-NKGKIALDL 687


>gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Meleagris gallopavo]
          Length = 864

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 251/714 (35%), Positives = 397/714 (55%), Gaps = 48/714 (6%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           + R ++L +G++AR +DGA +   G+T V+ T V  ++      F PL V+Y+++  A G
Sbjct: 133 SNRKMELSSGKLARFADGAAVVQLGDTAVMVTAV-SKTKPSASQFMPLVVDYRQKAAAAG 191

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IP  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P V+++
Sbjct: 192 RIPTNYLRRELGTTDKEILTSRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAI 251

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVE 189
             ASAAL LS +P+ GPV   +V  ++G+ V+NP R      +L+L V+   Q+ V+M+E
Sbjct: 252 NGASAALALSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLE 311

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK------------MCAKEPIVIDSKD- 236
             A  + +     AI  G  + + +I+ I +L K              A E IV  +K  
Sbjct: 312 ATAENILQQDFCHAIKVGVKQTQQIIQGIQQLVKERGVVKRNVQKLFVAPEEIVECAKKL 371

Query: 237 -FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            F+K+    +           F  +K  R + I+ ++ +       +       EI+  F
Sbjct: 372 AFNKIYAVFTD----------FSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESF 421

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             +   + R ++L++  R DGRD  ++RDI  +V + +  HGS+LF RG TQ +  VT  
Sbjct: 422 NAVSKDIFRNLILNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFD 481

Query: 356 TREDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           + E     D    ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA+ P
Sbjct: 482 SIESSVKSDLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAERALKP 541

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---- 467
           V+PQ   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GLV    
Sbjct: 542 VIPQ--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYD 599

Query: 468 ---KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
              +D +D+ +L+DI G ED+ G MDFK+AGT  G+TA+Q+D+K+ GI   I++ A+QQA
Sbjct: 600 LEGRDLEDYRLLTDILGIEDYYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQQA 659

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              +  IL  M++ L++ R    E  P VE + +P  +    +G G   ++ +  +TG  
Sbjct: 660 TAAKREILQIMNETLAKPRPNRKESGPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTGVT 719

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH- 638
           ++  D+ T  + + + + +  ARE I  +  D  EVN     +Y   + ++ D G  V  
Sbjct: 720 LSQLDEETYSVFAPTPSAMHEAREFIGELCKDDQEVNLEFGAVYTATITEIRDSGVMVKL 779

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
           +      L+H SQL   ++   S +  E G  + VK    D   G+++LS KV+
Sbjct: 780 YPNMTPVLLHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 833


>gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Homo sapiens]
 gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|62988884|gb|AAY24271.1| unknown [Homo sapiens]
 gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo
           sapiens]
          Length = 783

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/716 (33%), Positives = 401/716 (56%), Gaps = 38/716 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V ++   R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+
Sbjct: 45  RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP R +    +L+L V+G  +
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             ++M+E  A  + +     AI  G    + +I+ I +L K        +  +   KL  
Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFT 278

Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
              +++K   +++          +  +K  R + ++ ++         +    +  EI+ 
Sbjct: 279 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 338

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F  +  +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT
Sbjct: 339 SFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398

Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
             + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+
Sbjct: 399 FDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           +PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV  
Sbjct: 459 YPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516

Query: 470 GD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            D       D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+Q
Sbjct: 517 TDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQ 576

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG
Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637
             ++  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V
Sbjct: 637 VTISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696

Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
             +      L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Callithrix jacchus]
          Length = 784

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/716 (33%), Positives = 402/716 (56%), Gaps = 38/716 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V ++   R L++ +G++AR +DG+ +   G+T V+ TVV        Q F PL V+Y+
Sbjct: 45  RAVAVDLGTRKLEISSGKLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQ-FMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREIGTSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGIN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPK 223

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             ++M+E  A  + +     AI FG    + +I+ I +L K      I +  +   KL  
Sbjct: 224 SQIVMLEASAENILQQDFCHAIKFGVKYTQQIIQGIQQLVK-----EIGVTKRTPQKLFT 278

Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
              +++K   +++          +  +K  R + ++ ++         +    +  EI+ 
Sbjct: 279 PSPEIVKHAHKLTMEKLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEADPFEIIE 338

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F  +  +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT
Sbjct: 339 SFNVVAKEVFRSIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398

Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
             + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+
Sbjct: 399 FDSLESSIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           +PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV  
Sbjct: 459 YPVIPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516

Query: 470 G-------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
                   DD+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+Q
Sbjct: 517 TDPEKGEIDDYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAVQ 576

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG
Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPIVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637
             V+  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V
Sbjct: 637 VTVSQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696

Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
             +      L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens]
          Length = 783

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/716 (33%), Positives = 401/716 (56%), Gaps = 38/716 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V ++   R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+
Sbjct: 45  RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP R +    +L+L V+G  +
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             ++M+E  A  + +     AI  G    + +I+ I +L K        +  +   KL  
Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFT 278

Query: 243 EMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
              +++K   +++          +  +K  R + ++ ++         +    +  EI+ 
Sbjct: 279 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 338

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F  +  +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT
Sbjct: 339 SFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVT 398

Query: 354 LGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
             + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+
Sbjct: 399 FDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKAL 458

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           +PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV  
Sbjct: 459 YPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTK 516

Query: 470 GD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            D       D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+Q
Sbjct: 517 TDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQ 576

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA   +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG
Sbjct: 577 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFV 637
             ++  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V
Sbjct: 637 VTISQVDEETFSVFAPTPSVMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMV 696

Query: 638 H-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
             +      L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 697 KLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis]
 gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis]
          Length = 710

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/709 (34%), Positives = 383/709 (54%), Gaps = 35/709 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R LK  TG++A  +DG+ +  Y +T VL T +  +   +   F PL V+Y+E+  A   I
Sbjct: 2   RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENS-FLPLVVDYKEKASAACLI 60

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRR+    E EIL+ R IDRS+R LF K Y  +TQ+I +++  D  ++P VV++  
Sbjct: 61  PTTFLRRDLLANEREILVCRRIDRSVRSLFMKGYTYDTQIISHLLAADRFNNPDVVAVNG 120

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEA 192
           ASA+L LS +P+ GPV   ++  ++GQ V+NP R   +   LDL V+ ++  ++MVE  A
Sbjct: 121 ASASLALSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQLDLVVTSSESKIVMVEGFA 180

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP----IVIDSKDFSKLEEEMSQMI 248
            ++ ++ + +AI    +E +P+I+AI +L     KE     I+  S+  S   EE     
Sbjct: 181 KEVPDERLCEAIKLAFSEAQPIIQAIKELRSYAGKEKKHFDIISPSQQLSDAVEEWVSYN 240

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           +   + S     +  R  +I  L+ + V  F  +      G I   F  +   V R  +L
Sbjct: 241 RFTFKTSNVSFFQLQRDDRIFGLRDECVEIFQDQFPDSGPGLIEQAFNAVNKSVFRANIL 300

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS- 367
           +K  R DGR  + +R I   + L +  HGSSLF RG+TQ     T G+      VD++S 
Sbjct: 301 EKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISE 360

Query: 368 ---GTQRNDFMMHYNFLPCATGEV-SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              G++   FM+HY F P +T EV  R G+  RREIGHG LA RA+ PVLP   + P+TL
Sbjct: 361 AVGGSKEKQFMLHYEFPPFSTNEVKQRRGSFDRREIGHGALAERALVPVLPD--ELPFTL 418

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----------KDGDDF 473
           R+ +E+  S+GSSS+A+ C  SLA+MDAGVPI   VAG A GLV          +D D++
Sbjct: 419 RLTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDNY 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G ED+LG MDFK+AGT  GITA+Q D K+ G+   I+  A+++    R  +L+
Sbjct: 479 QLLTDILGIEDYLGDMDFKIAGTRQGITALQADFKVPGLPVAIVEEAIRRCSVDRAKVLD 538

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN------- 586
            M +V+  +R    +  P    + +P  +   +IG GG VIR + ++ G  ++       
Sbjct: 539 VMEEVIPIAREFKKDNIPVSGSVRVPLSKRGRLIGTGGMVIRALQQELGVSIDQVEEEEF 598

Query: 587 ---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642
                D  T   A S + E+     +   +T       IY+G++V++  +G  +  F   
Sbjct: 599 LVFAPDQTTYDEAISKINELLVDTNIFEELTSRLTEGAIYEGKIVEMRAYGLMLELFADC 658

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              L+H+ +L   RV +   +  K GD+V VK L  D++G++ +S K +
Sbjct: 659 PTVLLHVRELDHARVHRPEMLGFKVGDSVSVKYLGIDNKGRLNISRKAL 707


>gi|157111536|ref|XP_001651608.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
 gi|108883782|gb|EAT48007.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
          Length = 777

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/705 (34%), Positives = 395/705 (56%), Gaps = 29/705 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD-FFPLTVNYQERTYAVG 71
           GR +++ +G+ AR +DG  + + G+T V+ T V       G + F PL V+Y+++  A G
Sbjct: 44  GRVIRISSGKYARFADGCSVVSVGDTAVMVTAVAKPKPSGGNNSFLPLVVDYRQKAAAAG 103

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IP  +LRRE  P+E EIL +R++DRSIRP+F   Y+++TQ++ N++  D  + P V ++
Sbjct: 104 RIPTNFLRRELGPSEKEILAARLVDRSIRPMFPAEYRSDTQLVCNMLAIDSSNLPDVQAI 163

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMVE 189
            AASAAL LS +P+ GP+   +V  ++ + ++NP   E Q  SLDL V+   Q+ V+M+E
Sbjct: 164 NAASAALALSDIPWNGPIGAVRVGLVDNEIIINPTRKELQLSSLDLVVTAAKQNLVVMLE 223

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQM 247
              N ++E+ +  AI  G  E + +I  I KL K   K    +D   +   ++E  +  M
Sbjct: 224 GRGNVVNENELRMAIKKGTKEAQLIINGIEKLQKSFGKPKRTLDPLPQAAEEIEAAVRTM 283

Query: 248 IKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            +  LR     F  +K  R + + + +   +    S + + +   I   F      V R 
Sbjct: 284 AEMRLREIFRDFAHDKLSRDQAVTNSRTDTIDKVWSSYPNVDPALITDCFNRFSKTVFRE 343

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++  R DGR  + +R IS  V L +  HGS+LF RG TQ    V L + E    +D 
Sbjct: 344 MIFEENRRCDGRQLDDLRKISCGVNLHKPLHGSALFQRGQTQVFATVALDSHESALKLDP 403

Query: 366 LS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++    G +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P   + P+
Sbjct: 404 ITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLVPIIPH--EHPF 461

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDF 473
           T+R+ +E+ ES+GSSSMATVC  S+ALMDAG+P+ +  AG+A+GLV        K   D+
Sbjct: 462 TIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLVTKYENNDTKHLQDY 521

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+D+ G ED++G MD KVAGT  G+TA+Q D+K+ GI   +++ +LQ+A   R  IL+
Sbjct: 522 RILTDLLGIEDYMGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFRILD 581

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M + ++ +R    +  P  + + I P Q   ++G GG  IR +  +TG ++N +D+ T 
Sbjct: 582 IMDETIASARTLKKDCWPVTDQLQIEPHQRSKLVGPGGINIRRLYLETGVQLNQEDEHTF 641

Query: 594 KIASSSLAEIEAAREMIRSITDVP-----EVNKIYKGQVVKVMDFGAFVH-FCGARDGLV 647
           +I + S A +  A+E + S+  V      E   IY  ++V++ D G  V  +      L+
Sbjct: 642 RIFAPSEAAMHEAKEYLESLMKVEKIPDLEFGAIYTAKIVELKDTGVMVTLYPSMPPALL 701

Query: 648 HISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
           H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 702 HNSQLDQRKIAHPSALGLEVGSEIQVKYFGRDPVSGFMRLSRKVL 746


>gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=Polynucleotide
           phosphorylase 1; Short=PNPase 1; Flags: Precursor
          Length = 783

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/714 (33%), Positives = 398/714 (55%), Gaps = 38/714 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           ++M+E  A  + +     AI  G    + +I+ I +L K        +  +   KL    
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFTPS 280

Query: 245 SQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +++K   +++          +  +K  R + ++ ++         +    +  EI+  F
Sbjct: 281 PEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPQADPYEIIESF 340

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             +  +V R ++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  
Sbjct: 341 NVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400

Query: 356 TRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++P
Sbjct: 401 SLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP 460

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D
Sbjct: 461 VIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTD 518

Query: 472 -------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
                  D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA
Sbjct: 519 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQA 578

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  
Sbjct: 579 SVAKKEILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVT 638

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH- 638
           ++  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V  
Sbjct: 639 ISQVDEETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKL 698

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
           +      L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 699 YPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos
           taurus]
 gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
 gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
          Length = 783

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 400/711 (56%), Gaps = 30/711 (4%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y++
Sbjct: 46  SVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQ 104

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + 
Sbjct: 105 KAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNE 164

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QD 183
           P V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP R +    +L+L V+G  + 
Sbjct: 165 PDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTLNLVVTGAPKS 224

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFS 238
            ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P  + + S +  
Sbjct: 225 QIVMLEASAENILQQDFCHAIKVGVKHTQQIIQGIQQLVKENGVTKRTPQKLFVPSPEIV 284

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           K   +++ M K     + +  +K  R + I+ ++         +    +  EI+  F   
Sbjct: 285 KHAHKLA-MEKLYTVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPEVDSCEIIESFNIA 343

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
              V R+++L++  R DGRD  ++R+I+ +V + +  HGSSLF RG TQ +  VT  + E
Sbjct: 344 TKDVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLE 403

Query: 359 ----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
                ++ + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA++PV+P
Sbjct: 404 SNFKSDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAERALYPVIP 463

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---- 470
           +   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV       
Sbjct: 464 K--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSPDK 521

Query: 471 ---DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
              +D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+K+ GI   I++ A+QQA   
Sbjct: 522 GEIEDYRLLTDILGIEDYHGDMDFKIAGTSKGITALQADIKLPGIPIKIVMEAIQQASVA 581

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++ 
Sbjct: 582 KKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQ 641

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCG 641
            D+ T  I + + + +  AR+ I  I         E   +Y   + ++ D G  V  +  
Sbjct: 642 VDEETFSIFAPTPSAMHEARDFITDICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPN 701

Query: 642 ARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
               L+H +QL   ++   S +  E G  + VK    D   G+++LS KV+
Sbjct: 702 MTAVLLHNTQLDQRKIKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|149640866|ref|XP_001510386.1| PREDICTED: similar to polynucleotide phosphorylase-like protein
           [Ornithorhynchus anatinus]
          Length = 764

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/704 (35%), Positives = 391/704 (55%), Gaps = 36/704 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++  A G+IP 
Sbjct: 36  LEISSGKLARFADGCAVVQLGDTSVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIPT 94

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P V+++  AS
Sbjct: 95  NYLRRELGSSDKEILTSRIIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLAINGAS 154

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEAN 193
           AAL LS +P+ GPV   +V  ING+ V+NP R +    +L+L V+G  +  V+M+E  A 
Sbjct: 155 AALSLSDIPWNGPVGAVRVGLINGECVINPTRREMASSALNLVVAGAPRSQVVMLEAAAE 214

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLEE---EMSQM 247
            + +     AI  G    + +I+ I +L K   M  + P     K F+   E    +  +
Sbjct: 215 NVLQQDFSHAIKVGMKHTQQIIQGIQQLVKEGGMAKRTP----QKLFTAPPEIVKCVQNL 270

Query: 248 IKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
             E +    + F  +K  R + I+ ++         +    +  EI+  F  +  +V R+
Sbjct: 271 ATEKIYAVFTDFNHDKISRDEAINKIRLDTEEQLKEKFPEADPFEIIESFNVVSKEVFRS 330

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD- 364
           ++L++  R DGRD  ++RDIS +V + +  HGS+LF RG TQ +  VT  + E     D 
Sbjct: 331 IVLNEYRRCDGRDLTSLRDISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDL 390

Query: 365 ---SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
              ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+ PV+P+   FP+
Sbjct: 391 ITSAVSGVKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALIPVVPK--DFPF 448

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474
           T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GL+   +       D+ 
Sbjct: 449 TMRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAIGLITKNNSEKEEIEDYR 508

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +++DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +  IL  
Sbjct: 509 LMTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAIQQATVAKREILQI 568

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++ +S+ R    E  P VE + +P  +    +G GG  I+ +  +TG  ++  D+ T  
Sbjct: 569 MNRTISKPRASRKENGPVVETVQVPLSRRAKFVGPGGYNIKKLQAETGVTISQVDEETFS 628

Query: 595 IASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVH 648
           + + +   +  A E I  I         E   +Y   + ++ D G  +  +      L+H
Sbjct: 629 VFAPTPTAMHEAAEFINEICKDDQEQQLEFGAVYTATITEIRDIGVMIKLYSNMTPVLLH 688

Query: 649 ISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
            SQL   +V   S +  E G  + VK    D   G+++LS KV+
Sbjct: 689 NSQLDQRKVRHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 732


>gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Mus musculus]
 gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus]
 gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus]
 gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus
           musculus]
          Length = 783

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 400/713 (56%), Gaps = 36/713 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241
           ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P     K F+   
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281

Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E  + +++I  +   + F     +K  R + ++ ++     +   +    ++ EI+  F 
Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV
Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   + 
Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA 
Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  +
Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V  +
Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 400/713 (56%), Gaps = 36/713 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241
           ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P     K F+   
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281

Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E  + +++I  +   + F     +K  R + ++ ++     +   +    ++ EI+  F 
Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV
Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   + 
Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA 
Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  +
Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V  +
Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|161079377|ref|NP_001097990.1| CG11337, isoform C [Drosophila melanogaster]
 gi|158030458|gb|ABW08815.1| CG11337, isoform C [Drosophila melanogaster]
          Length = 721

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/658 (36%), Positives = 372/658 (56%), Gaps = 33/658 (5%)

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           N +  T++ G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 48  NGRNMTFSSGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 107

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 108 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 167

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234
           T Q+ V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++      
Sbjct: 168 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 227

Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +  K    M +M ++E  + S    +K  R   +++++  ++    S         I  
Sbjct: 228 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 285

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F      + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+
Sbjct: 286 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 345

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L ++E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R+
Sbjct: 346 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 405

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV 
Sbjct: 406 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 463

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +
Sbjct: 464 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 523

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   + +IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +
Sbjct: 524 LQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 583

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635
           TG  +   D+    + + S A ++ A+E+I        VP  E   IY  ++ ++ D G 
Sbjct: 584 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 643

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 644 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 701


>gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial precursor (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3-5 RNA
           exonuclease OLD35) [Equus caballus]
          Length = 784

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/710 (33%), Positives = 402/710 (56%), Gaps = 30/710 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+++
Sbjct: 47  VAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFLPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDFSK 239
           ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P  + I S +  K
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFIPSPEIVK 285

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              +++ M +     + +  +K  R + ++ ++         +    +  EI+  F  + 
Sbjct: 286 HTHKLA-MERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEVDPYEIIESFNVVS 344

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358
            +V R+++L++  R DGRD  ++R+I+ +V + +  HGS+LF RG TQ +  VT  + E 
Sbjct: 345 KEVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLES 404

Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
               ++ + +++G    +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+
Sbjct: 405 SIKSDRIITAINGVNDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIPK 464

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471
              FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   +    
Sbjct: 465 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISTAVAGVAIGLVTKNNPDKG 522

Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
              D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +
Sbjct: 523 EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 582

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  
Sbjct: 583 KEILQIMNKTISKPRASRKENGPLVETIQVPLSKRAKFVGPGGYHLKKLQAETGVTISQV 642

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGA 642
           D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V  +   
Sbjct: 643 DEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDAGVMVKLYPNM 702

Query: 643 RDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
              L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 703 TAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/713 (33%), Positives = 401/713 (56%), Gaps = 36/713 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V  ++      F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241
           ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P     K F+   
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281

Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E  + +++I  +   + F     +K  R + ++ ++     +   +    ++ EI+  F 
Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV
Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   + 
Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA 
Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  +
Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V  +
Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|25012192|gb|AAN71212.1| GM16802p [Drosophila melanogaster]
          Length = 717

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/658 (36%), Positives = 371/658 (56%), Gaps = 33/658 (5%)

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           N +  T++ G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 44  NGRNMTFSSGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 103

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 104 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 163

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-----S 234
           T Q+ V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++      
Sbjct: 164 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 223

Query: 235 KDFSKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +  K    M +M ++E  + S    +K  R   +++++  ++    S         I  
Sbjct: 224 PELGKAVRSMCEMRLREIFQDSTH--DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITE 281

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F      + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+
Sbjct: 282 QFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVS 341

Query: 354 LGTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           L ++E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R+
Sbjct: 342 LDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERS 401

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV- 467
           + P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV 
Sbjct: 402 LLPTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVT 459

Query: 468 -------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                  K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +
Sbjct: 460 KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMES 519

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQ+A   +  IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +
Sbjct: 520 LQKATDAKSKILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLE 579

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVP--EVNKIYKGQVVKVMDFGA 635
           TG  +   D+    + + S A ++ A+E+I        VP  E   IY  ++ ++ D G 
Sbjct: 580 TGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGV 639

Query: 636 FV-HFCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   ++A  S +  E G  + VK    D   G ++LS KV+
Sbjct: 640 MVILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 697


>gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus]
          Length = 748

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 395/713 (55%), Gaps = 33/713 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V ++   R L++ +G++AR +DG  +   G+T V+ T V  ++      F PL V+Y+
Sbjct: 11  RAVTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 70  QKAAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGIN 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +
Sbjct: 130 EPDILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPK 189

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKL 240
             ++M+E  A  + +     AI  G    + +I+ I +L K    AK     D   F + 
Sbjct: 190 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPAEDIYSFCRD 249

Query: 241 EEEMSQMIKEDL----RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            E    +  E L    ++   I    + C QI   +    S +  +    ++ EI+  F 
Sbjct: 250 CEVTKXIAMEKLYAGFQIMNMIKFXGMNCYQI---RLDPRSIYKEKFPEVDQFEIIESFN 306

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 307 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 366

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV
Sbjct: 367 LESSIKSDQIITAVNGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 426

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P+   FP+T+R+ SE+ ES+GSSSMA+ CG S ALMDAGVPIS  VAG+A+GLV   + 
Sbjct: 427 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSXALMDAGVPISSAVAGVAVGLVTKTNP 484

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA 
Sbjct: 485 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 544

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  +
Sbjct: 545 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 604

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V  +
Sbjct: 605 SQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 664

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 665 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 717


>gi|242006246|ref|XP_002423964.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
           humanus corporis]
 gi|212507240|gb|EEB11226.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
           humanus corporis]
          Length = 708

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 247/697 (35%), Positives = 390/697 (55%), Gaps = 37/697 (5%)

Query: 21  GRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           G++A+ +DG    T+ +T V+AT V          F PLTV++Q++  A+G+IP  +LRR
Sbjct: 6   GKLAKFTDGCATVTFKDTTVMATAVSSDKGGMYSGFVPLTVSFQQKAAALGRIPLNFLRR 65

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           E    ENEILISRMIDRS+RPLF   + NETQ++ N +  D E+ P V+S+ AASAAL +
Sbjct: 66  ELGQNENEILISRMIDRSLRPLFPANFNNETQIVCNPLAMDGENFPDVLSINAASAALAV 125

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDL-FVSGTQDAVLMVELEANQLSED 198
           S +P+ GPV   +V  ++   ++NP  +   + SL+L  VS  +  V+M+E   + +  +
Sbjct: 126 SNIPWNGPVGAVRVGLVDDNIIINPDKNLLSKSSLNLVVVSKAKHYVVMLEGSCSNILLN 185

Query: 199 VVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK----EDLR- 253
            +L AI  G +EC+ +I +I  LA +C K    +   + S++ EE+ Q I+    E L  
Sbjct: 186 DLLRAIKKGVSECQKIIISIEHLASLCGKPKKEV---NISEINEELYQSIQMLASEPLNK 242

Query: 254 -VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
                I +K  R   I +++  +   FS +  ++N+     +F  +  +V R  +L   +
Sbjct: 243 IFQNSIHDKLSRDTAISEVRTLIEKKFSDKCENFNQ-----IFSLVCKEVFRNYILINNI 297

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL----SG 368
           R DGR    +R+I  +  L +  HGS+LF RG TQ    V L +      +D +    SG
Sbjct: 298 RCDGRLPVELRNIECESNLFKPLHGSALFQRGQTQVFCTVALDSPSSALKMDRISMLTSG 357

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +  +F +HY F P AT E+ ++G   RREIGHG LA +A+   +P+   FP+T+R+ SE
Sbjct: 358 LKEKNFFVHYEFPPFATKEIGKLGPIGRREIGHGSLAEKALKANIPE--NFPFTIRLTSE 415

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISG 481
           + ES+GSSSMATVCG +LAL+DAGVP+ K  AG+AMG+V   D       D++IL+DI G
Sbjct: 416 VLESNGSSSMATVCGGTLALLDAGVPLIKECAGVAMGVVTKWDDDKSGIIDYVILTDILG 475

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED+ G MD KVAGT + ITA+QMD+K  G+   I++ ++ QAK+     L  M K +  
Sbjct: 476 IEDYFGDMDMKVAGTKNHITAIQMDVKTPGLPIKIVMESITQAKQAISTTLTRMFKDVDL 535

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            +    +  P +E + +P +Q    IG GG  I+    +TG ++  ++ G  +I +++  
Sbjct: 536 QKKVKKDNWPVIEKLNVPVNQRAKFIGPGGINIKNFEMKTGVEITEENLGEFQIFAANKE 595

Query: 602 EIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTE 655
            +  A ++I    +     V E   IY   + ++ + G  V    A +  L+ ++QL  +
Sbjct: 596 ALNEAMKIINEKINSQKEPVLEFGAIYTATITEIREHGCMVILYPAMQPVLIPVTQLDHK 655

Query: 656 RVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +V+  S + +K GD   VK    D   G ++LS KV+
Sbjct: 656 KVSHPSALNLKVGDQFKVKYFGRDPISGYMRLSRKVL 692


>gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Macaca mulatta]
          Length = 754

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/656 (34%), Positives = 373/656 (56%), Gaps = 36/656 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           W  R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+++  A 
Sbjct: 17  WQ-RKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAA 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P V++
Sbjct: 75  GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDVLA 134

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMV 188
           +  AS AL LS +P+ GPV   ++  I+G+YV+NP R +    +L+L V+G  +  ++M+
Sbjct: 135 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 194

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
           E  A  + +     AI  G    + +I+ I +L K      I +  +   KL   + +++
Sbjct: 195 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVK-----EIGVTKRTPQKLFTPLPEIV 249

Query: 249 KEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           K   +++          +  EK  R + I+ ++         +    +  EI+  F  + 
Sbjct: 250 KHTHKLAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVA 309

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE- 358
            +V R+++L++  R DGRD  ++R+IS +V   +  HGS+LF RG TQ +  VT  + E 
Sbjct: 310 KEVFRSIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLES 369

Query: 359 ---DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
               +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+
Sbjct: 370 SIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPK 429

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471
              FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D    
Sbjct: 430 --DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKG 487

Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
              D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +
Sbjct: 488 EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 547

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  
Sbjct: 548 KEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV 607

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF 639
           D+ T  + + + + +  AR+ I  I         E   +Y   + ++   G  +  
Sbjct: 608 DEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRKLGILIKL 663


>gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/713 (33%), Positives = 399/713 (55%), Gaps = 36/713 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241
           ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P     K F+   
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 281

Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E  + +++I  +   + F     +K  R + ++ ++     +   +    ++ EI+  F 
Sbjct: 282 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 341

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 342 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV
Sbjct: 402 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 461

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   + 
Sbjct: 462 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 519

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA 
Sbjct: 520 EKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQAS 579

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  +
Sbjct: 580 VAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTI 639

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  I + +   +  AR+    I         E   +Y   + ++ D G  V  +
Sbjct: 640 SQVDEETFSIFAPTPTAMHEARDFNTEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 700 PNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 784

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/713 (33%), Positives = 401/713 (56%), Gaps = 36/713 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFS--- 238
           ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P     K F+   
Sbjct: 226 IVMMEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTP----QKLFTPSP 281

Query: 239 KLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           ++ E   ++  E L    + +  +K  R + ++ ++         +    +  EI+  F 
Sbjct: 282 EIVEHTHKLTMERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLREKFPEADTYEIIESFN 341

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  ++ R+++L++  R DGRD  ++R+I+ +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 342 VVAKEIFRSIILNEYKRCDGRDLTSLRNINCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 401

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV
Sbjct: 402 LESSMKSDQIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPV 461

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   + 
Sbjct: 462 IPK--DFPFTVRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKNNP 519

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+K+ GI   I++ A+QQA 
Sbjct: 520 DKGEIEDYRLLTDILGIEDYNGDMDFKIAGTTKGITALQADIKLPGIPIKIVMEAIQQAS 579

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  I+  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  V
Sbjct: 580 VAKKEIIQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTV 639

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V  +
Sbjct: 640 SQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLY 699

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 700 PNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 752


>gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
           49179]
 gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
           49179]
          Length = 679

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 248/676 (36%), Positives = 375/676 (55%), Gaps = 23/676 (3%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           IA+Q+  A+L  +   V+LAT++ D++  + ++F PL+V++ +R YA+G+IPGG+ +RE 
Sbjct: 15  IAKQATSALLYRHKGCVILATIMVDKACVE-ENFLPLSVHFSQRAYAIGRIPGGFNKREG 73

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           + +E E L SR IDRS+RPLF+K Y + TQ+ + V+ HD +S   V ++ AA+ AL L+ 
Sbjct: 74  KLSEFETLTSRAIDRSLRPLFAKDYAHPTQITLLVLSHDQQSDLQVCALHAAANALYLAN 133

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ-LSEDVV 200
           L  E  V   +V  I G+ V NP   E Q S L+L+VSGT +A+LMVE+ + + L E  +
Sbjct: 134 LGIEN-VAAVRVGRIGGKIVYNPNATELQKSDLNLYVSGTSEALLMVEMHSQESLPEATL 192

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK------LEEEMSQMIKEDLRV 254
           LD +       +       K      K P+ I++           L++   Q I E ++ 
Sbjct: 193 LDLLEKAQKHIRENCLQFQKSFAPHRKAPLAINTPTPPNPTLELLLKQHFHQQILE-IKT 251

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
                E+ V       L   +      +  S+   +I    E    + +R  +L  K R 
Sbjct: 252 QMAKSEREV---DFAHLTTAIAHTLQEKGHSYTFEQIQRSLERYTHQCIREEILHTKTRP 308

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           DGR  ET+R IS +  LL   HGS+LF RG TQA+VV T+G   D +  ++L G  +  F
Sbjct: 309 DGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENLDGLHKERF 368

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           M HYNF P + GE + + AP RREIGHG LA+ A+   + ++ Q   T+R+VSEI ES+G
Sbjct: 369 MFHYNFPPFSVGEATPLSAPGRREIGHGNLAKCALQGSILESDQ---TIRLVSEILESNG 425

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           SSSMA+VCG SLAL  +G+ +   +AG+AMGL+  G++  ILSDIS  ED  G MDFK+A
Sbjct: 426 SSSMASVCGGSLALYASGIKLKSLIAGVAMGLIIQGEETAILSDISALEDMQGDMDFKIA 485

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           G   G+ A+QMD KI G+S  ++   LQQAK  R  IL  M + + E  +   +  P  E
Sbjct: 486 GNLEGVVALQMDTKIAGLSLALLSQILQQAKEARGAILECMEQAI-EGIMPNTDALPTQE 544

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
             ++PP +I  +IG  GK I+ I+E+   ++ +D        S     +  A+E I  +T
Sbjct: 545 SFSVPPKKIATIIGPSGKSIKEIIERFEVQIELDKTSGAVCISGGAQNVLDAKEYILEMT 604

Query: 615 DVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                 V ++ + ++ KV+DFG FV      D L+H S L    + K  D   E +T+  
Sbjct: 605 GFQPYHVEEVLEVEIKKVVDFGIFVRLPRGGDALLHKSHLEKRDLDK--DSFMENNTLEC 662

Query: 673 KLLDF-DDRGKIKLSM 687
           +++   DD GKI + +
Sbjct: 663 RIIAIHDDSGKIDVDL 678


>gi|282897293|ref|ZP_06305295.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
 gi|281197945|gb|EFA72839.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
          Length = 458

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/405 (48%), Positives = 274/405 (67%), Gaps = 2/405 (0%)

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFI 342
           ++ N   + + F+DI    +R  +++  VR+DGR  + VR +S+QVGLL +R HGS LF 
Sbjct: 34  ATANSQVLTNTFKDITKYFMRRQIVEDNVRVDGRKLDEVRPVSSQVGLLPRRVHGSGLFN 93

Query: 343 RGDTQAIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
           RG TQ +   TLGT  D Q + D L   Q   ++ HYNF P + GE   + AP RREIGH
Sbjct: 94  RGLTQVLSACTLGTPGDAQSLSDDLQVDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGH 153

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RAI PVLP   QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G
Sbjct: 154 GALAERAILPVLPTKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSG 213

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
            AMGL+K+G +  +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  AL
Sbjct: 214 AAMGLIKEGSEVRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIKQAL 273

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  RLHIL++M + + + R +   F PR+  + I PD I  VIG GGK I+GI E+T
Sbjct: 274 EQAKDARLHILDKMLQTIDKPRTETSPFAPRLVTIKIDPDMIGLVIGPGGKTIKGITEET 333

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           GAK++I+D G V I++   +  + A+ +I+ +T       +Y G+V +++  GAFV F  
Sbjct: 334 GAKIDIEDSGIVTISAIDESRAKRAKSIIQGMTRKLHEGDVYLGRVTRIIPIGAFVEFLP 393

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ++G++HISQL+  RV K  D V  G+ V VK+ + D +G+I L+
Sbjct: 394 GKEGMIHISQLADYRVGKVEDEVAVGEEVIVKVREIDSKGRINLT 438



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 16/204 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-LTVNYQERT---YA 69
           RP+  + G + R+  G+ L   G T VL+      +  D Q     L V+  +R    Y 
Sbjct: 73  RPVSSQVGLLPRRVHGSGLFNRGLTQVLSACTLG-TPGDAQSLSDDLQVDQSKRYLHHYN 131

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES--SPH 127
                 G  +    P   EI    + +R+I P+     K +   +I V+   L S  S  
Sbjct: 132 FPPFSVGETKPLRAPGRREIGHGALAERAILPVLPT--KEQFPYVIRVVSEVLSSNGSTS 189

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD----ED-QGSLDLFVSGTQ 182
           + S+  ++ ALM +G+P   PV GA +  I     +    D    ED  G +D  V+GT 
Sbjct: 190 MGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSEVRVLTDIQGIEDFLGDMDFKVAGTD 249

Query: 183 DAV--LMVELEANQLSEDVVLDAI 204
             +  L ++++ + LS DV+  A+
Sbjct: 250 TGITALQMDMKISGLSLDVIKQAL 273


>gi|118087502|ref|XP_419282.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 728

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 245/694 (35%), Positives = 382/694 (55%), Gaps = 48/694 (6%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           L   G+T V+ T V  ++      F PL V+Y+++  A G+IP  YLRRE   T+ EIL 
Sbjct: 17  LIQLGDTAVMVTAV-SKTKPSASQFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDKEILT 75

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           SR+IDRSIRPLF   Y  +TQ++ N++  D  + P V+++  ASAAL LS +P+ GPV  
Sbjct: 76  SRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAINGASAALALSDIPWNGPVGA 135

Query: 152 AQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHN 209
            +V  ++G+ V+NP R      +L+L V+   Q+ V+M+E  A  + +     AI  G  
Sbjct: 136 VRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEATAENILQQDFCHAIKVGVK 195

Query: 210 ECKPVIEAISKLAK------------MCAKEPIVIDSKD--FSKLEEEMSQMIKEDLRVS 255
           + + +I+ I +L K              A E IV  +K   F+K+    +          
Sbjct: 196 QTQHIIQGIQQLVKERGVVKRTVQKLFVAPEEIVECAKKLAFNKIYAVFTD--------- 246

Query: 256 CFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMD 315
            F  +K  R + I+ ++ +       +       EI+  F  +   + R ++L++  R D
Sbjct: 247 -FSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNAVSKVIFRNLILNEYRRCD 305

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD----SLSGTQR 371
           GRD  ++RDI  +V + +  HGS+LF RG TQ +  VT  + E     D    ++SG + 
Sbjct: 306 GRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSGIKD 365

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            +FM+HY F P AT E+ ++   +RRE+GHG LA RA+ PV+PQ   FP+T+R+ SE+ E
Sbjct: 366 KNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAERALKPVIPQ--DFPFTIRVTSEVLE 423

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-------KDGDDFIILSDISGDED 484
           S+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GLV       +D +D+ +L+DI G ED
Sbjct: 424 SNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRDIEDYRLLTDILGIED 483

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           + G MDFK+AGT  G+TA+Q+D+K+ GI   I++ A+QQA   +  IL  M++ L++ R 
Sbjct: 484 YYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQQATAAKREILQIMNETLAKPRP 543

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
              E  P VE + +P  +    +G G   ++ +  +TG  ++  D+ T  + + + + + 
Sbjct: 544 NRKESGPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTGVTLSQLDEETYSMFAPTPSAMH 603

Query: 605 AAREMIRSIT-DVPEVN----KIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVA 658
            ARE I  +  D  EVN     IY   + ++ D G  V  +      L+H SQL   ++ 
Sbjct: 604 EAREFIGELCKDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNMTPVLLHNSQLDQRKIK 663

Query: 659 KTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
             S +  E G  + VK    D   G+++LS KV+
Sbjct: 664 HPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 697


>gi|170586564|ref|XP_001898049.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
           malayi]
 gi|158594444|gb|EDP33028.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
           malayi]
          Length = 752

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/689 (35%), Positives = 377/689 (54%), Gaps = 34/689 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVV-YDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           ++ ETG IAR +DGAV+ + GET VLATVV    S  D  DF PLTV++Q+   AVG+IP
Sbjct: 45  IRFETGHIARLADGAVVVSQGETSVLATVVGRHSSASDTADFMPLTVDFQQSASAVGRIP 104

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
             YLRRE +  + +IL SRMIDRSIRPLF K Y  ETQ+I   +  D +  P ++ + AA
Sbjct: 105 MNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAA 164

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA--VLMVELE 191
           SAAL LS +P+EGP+   +V  IN + V+NP R +    S+DL ++G  +   +LM++++
Sbjct: 165 SAALTLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIAGCDNGKRILMIDMD 224

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-------EPIVIDSKDFSKLEEEM 244
             ++  +   + I  G      +I+AI+K+   C +       E I I   D   L EEM
Sbjct: 225 GCEIEMENFSECIRIGLQAISHLIQAINKVKDSCGRPKRQNGNEEIDI---DLIALTEEM 281

Query: 245 SQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
             +  + L   ++    +K  R + + +L  +++  F    S     ++   F ++  + 
Sbjct: 282 HVLCGDQLYQILTNAKHDKLSRDQAVSELGDRLLEKFKERSSPH---KLRHTFRNLLKRS 338

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R  +   + R DGR    +R ++ ++ + +  HGS+LF RG TQ    VT         
Sbjct: 339 LREALFKSEKRCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQ 398

Query: 363 VDSLS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            D+LS      Q+  FM+HY F   AT  +S     SRRE+GHG LA +A+  ++P    
Sbjct: 399 PDALSQLLGAQQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIPD--D 456

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPY LR+  ++ ES+GSSSMA+VC   LAL+DAGV I  P AGIAMGL+  ++ +D+ IL
Sbjct: 457 FPYCLRLACDVLESNGSSSMASVCAGCLALLDAGVQIKAPAAGIAMGLIINEERNDYRIL 516

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI+G ED  G MDFK+AGT  G TAMQ+D+K+ GI+  ++  +L+QA+ G  H+L  M 
Sbjct: 517 TDINGLEDFAGDMDFKIAGTVRGYTAMQLDLKVPGITPKLVTESLKQARNGLEHLLQLMK 576

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K    SR Q     P  E + +   +   +   GG   + I  +TGAK++I+DD  + I 
Sbjct: 577 KAQPVSRDQFKTTVPVHETIPVEIYKRHIIFRSGGYNAKLIESETGAKISIEDDTNISIF 636

Query: 597 SSSLAEIEAAREMIRSITDVPE-----VNKIYKGQVVKVMDFGAFVHFC-GARDGLVHIS 650
           + +  ++E A+ M+  + +           +YK ++  ++D G  V    G +  L+  S
Sbjct: 637 APNKVKLEEAKVMLNKMFENENEIDLVFGAMYKAEITDLLDHGVLVTLHKGMKPILLKNS 696

Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFD 678
            L    VA    +  K G  + ++ L  D
Sbjct: 697 NLDVRNVAHAKVLGFKVGQKIIIQYLGRD 725


>gi|238063392|ref|ZP_04608101.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
           39149]
 gi|237885203|gb|EEP74031.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
           39149]
          Length = 548

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/532 (40%), Positives = 316/532 (59%), Gaps = 29/532 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  ++  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ-----DA 184
           + AAS +  LSGLPF GP+   ++ +++GQ+V  P  +E  + + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELARATFDMVVAGRALADGDVA 199

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE---- 228
           ++MVE EA + +  +V D         +  G    KP I     A S LA++ AK     
Sbjct: 200 IMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQSVLAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D +      + ++ +++ ++  +  I  K  R   +D +K ++            E
Sbjct: 260 PVFLDYQ--PDAYDAVAGLVRVEVAEALKIAGKADREGALDRIKARVAEELGGRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R +SA+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  ++
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDV 548


>gi|324505266|gb|ADY42265.1| Polyribonucleotide nucleotidyltransferase 1 [Ascaris suum]
          Length = 746

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/705 (34%), Positives = 403/705 (57%), Gaps = 30/705 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVGKIP 74
           ++ ETG +AR +DGA + + G+  +LAT V +R S      F PLTV++++   AVG+IP
Sbjct: 44  IQFETGHLARFADGAAVVSQGDNAILATAVGERDSSSSTTSFLPLTVDFKQSAAAVGRIP 103

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
             YLRRE + ++ +IL SR+IDRSIRPLF + Y++ TQVI   +  D      V+ + AA
Sbjct: 104 TNYLRREMQQSDADILASRIIDRSIRPLFPEQYRDATQVICKPLCLDETGDGVVLGINAA 163

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA--VLMVELE 191
           S AL +S +P+ GPV   +V  I+ + V+NP  +E  +  L++ +SG  D   VLM++++
Sbjct: 164 STALAVSNIPWNGPVGAVRVAIIDDRVVVNPARNELKRAKLNMVLSGCGDGKRVLMIDMD 223

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKE 250
           A +++   + +    G      +  AI K+     K    + + +  + L EE++++  E
Sbjct: 224 ACEVNAVKLDECFEAGLEAVARITAAIEKIVSEAGKIKRELAAPEVDEALIEEVAKLSSE 283

Query: 251 DLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
            L   +S    +K  R   I +L  ++++ F+ E  S     I  +F  +  K +R ++L
Sbjct: 284 RLYYILSDTSHDKTSRDVAIAELGDEVLAAFTDESPSV----IRQIFSSLTKKTLREMVL 339

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS- 367
           +  VR DGR     R I+ +V L ++ HGS+LF RG TQ +  VT        + DS+S 
Sbjct: 340 ETSVRCDGRALNDFRPINIEVDLYKKLHGSALFQRGQTQVLGTVTFDAPSAAFHPDSISQ 399

Query: 368 --GTQRND-FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             G QR   FM+HY F P A  E+S     +RRE+GHG LA +A+  ++P+   FPY++R
Sbjct: 400 LLGAQRRKMFMLHYEFPPYAVNEISSSRGLNRRELGHGALAEKALQHLIPE--NFPYSVR 457

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482
           +  ++ ES+GSSSMA+VC  SLAL+DAGVP+  P AG+A+GL+ + D   + +L+DI G 
Sbjct: 458 LACQVLESNGSSSMASVCVGSLALLDAGVPLKAPAAGVAIGLITNSDASQYKLLTDILGI 517

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED+ G MDFK+AGT +G+TAMQ+D+KI GIS  ++  A+ + + G  ++L+ M K     
Sbjct: 518 EDYAGDMDFKIAGTSNGLTAMQLDLKIAGISRQLLNEAISRGREGIAYVLSLMEKAQKAP 577

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +  +  P  E ++IP  +   +   G   ++ I  +TG K++++DD  + + + + A 
Sbjct: 578 RAEFKDSVPITENVSIPIFRRHILFRSGAYNVKLIEAETGVKISLEDDANICLTAPNRAR 637

Query: 603 IEAAREMIRSI----TDVPEVN--KIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTE 655
           +E A+EM+  +    +D+ E+N   +YK ++V++++ G  V    G R   +  S L   
Sbjct: 638 LEEAKEMMERLFADESDI-ELNFGALYKAEIVEILESGVMVTLKKGMRPMFLKNSNLDAR 696

Query: 656 RVAKTSDVVKE-GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           RVA  S +  E G  + V+ L  D   G  ++S K + Q+T  P+
Sbjct: 697 RVAHASALGLEVGSMITVQYLGRDATTGHHRISRKTL-QSTTLPV 740


>gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
 gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
          Length = 981

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 386/708 (54%), Gaps = 44/708 (6%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           PL L TG +A+ +DG   A  G+T V+ T V  ++      F PLTV+Y+++  A G+IP
Sbjct: 235 PLILSTGELAKLADGCATAQIGDTTVMVTAVSKKN-SSSPGFLPLTVDYRQKAAAAGRIP 293

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
             +LRRE   T+ EIL SRMIDRSIRPLF K +  +TQV+ N++  D    P V+S+  A
Sbjct: 294 TNHLRRERGVTDQEILTSRMIDRSIRPLFPKGFFYDTQVMCNLLAVDGLQDPGVISINGA 353

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVL-MVELEA 192
           SAAL LS +P+ GP+   +V  I+ + ++NP RLD  + ++++ V+GT+ + L MVE  A
Sbjct: 354 SAALALSDVPWNGPIGAVRVGLIDEEVMINPTRLDMRRSTINMVVAGTKKSNLVMVEASA 413

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----------PIVIDSKDFSKLE 241
           + + +   L A+  G  E + ++ +I KLA+   KE           P ++DS    +L 
Sbjct: 414 DNVLQTDFLKALKAGLKETQIIVRSIEKLAREHGKEKREYEPFGIPSPEILDS--VRRLA 471

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E    +  D   +     K+ R      +++  +S       + +   +   F  +   
Sbjct: 472 AEQYHAVYTDPTHN-----KFSRDNAASQVREHHISTVREMFPNEDPSLLNDAFSIVAKD 526

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V R ++L++  R DGR+++ +RDI+  V L +  HGS+LF RG TQ    VT  + E   
Sbjct: 527 VFRKIILEEDKRCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESAL 586

Query: 362 YVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             D +     +  +FM+HY F P AT E  R G  +RRE+GHG LA + + PV+P  + +
Sbjct: 587 RADPVWQEDIREKNFMLHYEFPPYATNETGRTGGINRRELGHGALAEKGLRPVVP--SDY 644

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------- 471
           P+T+R+ SE+ ES+GSSSMATVCG SLALMDAGVP+S PVAG+A+G++ + +        
Sbjct: 645 PFTIRLTSEVLESNGSSSMATVCGGSLALMDAGVPVSHPVAGVAIGVITETEPDDIFTIK 704

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D  I++D+ G ED++G MD K+AG+  GITA+Q D+K+  +   I+V A+Q     +  I
Sbjct: 705 DHRIVTDLLGIEDYMGDMDMKLAGSKKGITALQTDVKV-PLPMKIIVEAIQAGTAAKSKI 763

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           LN M+  + + R      +P  E + +P  +    IG GG  ++ +  +TG  ++  D+ 
Sbjct: 764 LNIMASSIRKPRDLRKSNSPVTENLEVPVQRRSKFIGPGGYNLKKLRVETGVTISPVDET 823

Query: 592 TVKIASSSLAEIEAAREMIRSI------TDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RD 644
              + + + + +  A+E I  +       D+ E   IY   + ++ D G  V    A   
Sbjct: 824 HFSVFAPTPSAMSEAKERIEQLLLEDKEPDL-EFGGIYTATITELRDNGVLVKLYPAMPP 882

Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
            L+H SQL   +V   S +  E G  + VK    D   GK++LS K +
Sbjct: 883 TLLHNSQLDQRKVNHPSALKMEVGQEIPVKYFGRDPVSGKMRLSRKAL 930


>gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
 gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
          Length = 734

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 389/674 (57%), Gaps = 62/674 (9%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + A  +D +V+   G +V+L +V  D      +DF PL+V Y E+ YA+GKIP G+L++E
Sbjct: 47  KYATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIPQGFLKKE 106

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +P++NEILISR+IDRS+RPLF K Y    Q+ I VM +D +      +M  AS  L LS
Sbjct: 107 GKPSDNEILISRLIDRSLRPLFPKDYPYPVQITILVMSYDNKIDICQKAMNLASICLYLS 166

Query: 142 GLPF--EGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE------- 191
            +P   +G + G +V   + ++ L   L D  +  LDLFVSG  + V M+E++       
Sbjct: 167 SIPLTQKGILNGIRVMRRDDEFSLCDDLNDLLESKLDLFVSGINNNVSMIEMQSLKTTTQ 226

Query: 192 --------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF------ 237
                   AN++S++ +L+AI    N  K  IE +S L  M   EP +++ +++      
Sbjct: 227 NKDSIIENANEISKNDLLEAI----NLAKKHIETMSMLY-MKHFEPFILEKREYEGSNKL 281

Query: 238 -----SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
                  LE+E +  IKE L   C +  K  R  Q+  L K++    S  H+   E EIV
Sbjct: 282 DLALKESLEKEHTDSIKECL---CGMS-KTERHTQLIALIKEI----SQTHNL--EREIV 331

Query: 293 S--VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           +  VF  I+ +++R+++L++  R DGR    +R+IS +  LL +THGS+ F RG TQA+V
Sbjct: 332 AKHVFA-IKKEIMRSMILNEGKRADGRALREIREISIESNLLPKTHGSACFTRGQTQALV 390

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
             TLG++ D Q  + +    ++  + HYNF P + GE   +GA SRRE+GHG LA +AI 
Sbjct: 391 TCTLGSQNDAQTQEGILTQGKSKIIFHYNFPPFSVGEAYPIGASSRRELGHGNLALKAIE 450

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
                 A  P+T+R+VSEI +S+GSSSMA+VCG+SLAL+ A + +   VAGIAMGL+ + 
Sbjct: 451 ---SNVANTPHTIRLVSEILQSNGSSSMASVCGASLALLGADIKMHNMVAGIAMGLIYES 507

Query: 471 DD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           ++ F ILSDI G ED  G MDFK+AG + G +A+Q+D+KI G+SE+I+  +L+QA+ G L
Sbjct: 508 EERFAILSDIMGLEDFDGDMDFKIAGNEKGFSALQLDIKIHGLSESILNQSLEQAREGIL 567

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID- 588
           HIL+ M  V  +   +L    P+ E   +P   I  +IG GG+ IR I+ +    +NID 
Sbjct: 568 HILSLMRNVEIKPNYEL---LPQKESFCVPHTSIGEIIGQGGRTIRDIISRFQVSINIDK 624

Query: 589 DDGTVKIASSSLAEIEAAREMI------RSITDVP-EVNKIYKGQVVKVMDFGAFVHFCG 641
           D+G V I++++   ++ A+  I      +   ++P +V +  +G V K ++ G  V    
Sbjct: 625 DEGIVHISANNKDSMQNAKNFILDLLRKKEKKELPYKVGECVEGVVSKQVESGFLVDLAQ 684

Query: 642 ARDGLVHISQLSTE 655
             +G++    +  E
Sbjct: 685 GGNGILRTISMQEE 698


>gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
           nucleotidyltransferase 1, mitochondrial-like [Nomascus
           leucogenys]
          Length = 778

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/714 (32%), Positives = 394/714 (55%), Gaps = 43/714 (6%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           ++M+E  A  + +     AI  G    + +I+ I +L K        +  +   KL    
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VTKRTPQKLFTPS 280

Query: 245 SQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +++K   +++          +  +K  R + ++ ++         +    +  EI+  F
Sbjct: 281 PEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESF 340

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             +  +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  
Sbjct: 341 NVVTKEVFRSIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400

Query: 356 TRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++P
Sbjct: 401 SLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP 460

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS PVAG+A+GLV   D
Sbjct: 461 VIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSPVAGVAVGLVTKTD 518

Query: 472 -------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
                  D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA
Sbjct: 519 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQA 578

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
               +   N       + R    E  P VE + +P  +    +G GG  ++ +  + G  
Sbjct: 579 SGELVSXTNYF-----KPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQLKQGVT 633

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH- 638
           ++  D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V  
Sbjct: 634 ISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKL 693

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
           +      L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 694 YPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 747


>gi|323449631|gb|EGB05517.1| hypothetical protein AURANDRAFT_59314 [Aureococcus anophagefferens]
          Length = 736

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 247/700 (35%), Positives = 386/700 (55%), Gaps = 31/700 (4%)

Query: 5   HTVEIEWAG--RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           H V I+      PL LETGR+ RQ+D AV+A  G T V  T+    S   G DF P++V 
Sbjct: 40  HAVSIDLGDGHEPLVLETGRLGRQADAAVIAKRGGTTVYTTLCVG-SADGGGDFLPMSVE 98

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQER  + G+  GGY +R+ R  + EIL  R+IDR +RP     +  + Q+I  V+ +D 
Sbjct: 99  YQERYSSTGRTSGGYNKRDGRANDKEILTCRLIDRPLRPTVVDGWCADLQLISWVLSYDG 158

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQV-----DYINGQYVLNPRLDE-DQGSLDL 176
           +    V+++ AA+AAL LS +P    V  A+V     D     +V +P ++E +  +  +
Sbjct: 159 QYPADVLAVQAAAAALQLSTVPTLCDVGCARVVATADDDGAVAFVSDPTVEELEAAAFQI 218

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
            V    D+V+MVE E + + +DV ++A+     +   V EAI   A    ++   I +K+
Sbjct: 219 VVGSGGDSVVMVEAEGDFVGDDVAVEALTRATADAARVGEAIGAWAADL-RDSGAIPAKE 277

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
                      +K  L    F  + +   K+ + L  K++++  ++   + + +     +
Sbjct: 278 AGDRVRPFPADLKAAL-AEAFADDAHR--KKYEALDAKIIAF--ADERGYGKADARRAAK 332

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  K +  V+  +  R DGR ++ VR I   +  L   HGS++F RG+TQ++   TLG 
Sbjct: 333 KLTEKCLGDVVRAEGKRSDGRATDEVRPIDVAMRPLPTAHGSAVFTRGETQSLATCTLGD 392

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
                 ++  +D     +R  F + Y F P + GE  R+GAP RRE+GHG LA +A+   
Sbjct: 393 NSMNLRNDDALDDAKPDKR--FYLQYAFPPSSVGETGRVGAPGRREVGHGALAEKALRAA 450

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG-LVKDGD 471
           +P    FPY++R+ S ITES GSSSMA+VCG  LAL+D GVP+   VAG+AMG L+ DG+
Sbjct: 451 MPDKDAFPYSVRVESLITESCGSSSMASVCGGCLALLDGGVPLRCSVAGVAMGVLLADGE 510

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D ++L+DI G ED LG MDFKVAG+  GI+A Q+D+K  G+S   +  A+ QA+  RLH+
Sbjct: 511 DPVVLTDILGVEDALGSMDFKVAGSAEGISAFQLDVKTLGLSAATLGDAMGQARAARLHV 570

Query: 532 LNEM-SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDD 589
           L+EM ++  +E    L    PR + + + P  I  +IG GG  I+G++++   + +++ +
Sbjct: 571 LSEMATRGTAEPATTLAPSVPRSKQLQVDPSFIGKIIGKGGATIKGLIDEFALSNIDVSE 630

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLV 647
            G V ++      +  A E I ++     V+K Y G VV + +FGAFV F      +GL 
Sbjct: 631 AGLVTVSGLDDEGVAGAVEAITALC----VDKTYAGSVVSIKNFGAFVEFDDFPGLEGLC 686

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           HIS+L+ ERV      ++ GD+  VK+L  DD  K KLS+
Sbjct: 687 HISELALERVRNIEKFIEVGDSFDVKVLAVDDDSK-KLSL 725


>gi|73969672|ref|XP_538497.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 1 [Canis familiaris]
          Length = 789

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 230/681 (33%), Positives = 383/681 (56%), Gaps = 30/681 (4%)

Query: 36  GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMI 95
           G+T V+ T V  ++      F PL V+Y+++  A G+IP  YLRRE   ++ E+L SR+I
Sbjct: 81  GDTAVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVI 139

Query: 96  DRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD 155
           DRSIRPLF   Y  +TQV+ N++  D  + P V+++  AS AL LS +P+ GP+   ++ 
Sbjct: 140 DRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIG 199

Query: 156 YINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKP 213
            I+G+ V+NP R +    +L+L V+G  +  ++M+E  A  + +     AI  G    + 
Sbjct: 200 MIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAENILQQDFCHAIKVGVKYTQQ 259

Query: 214 VIEAISKLAK---MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQI 268
           +I+ I +L K   +  + P  + +    ++ E + ++  E L    + +  +K  R + I
Sbjct: 260 IIQGIQQLVKEIGVTKRTPQKLFTPS-PEIVEHIHKLTMERLYAVFTDYEHDKISRDEAI 318

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328
           + ++         +    +  EI+  F  +  +V R+++L++  R DGRD  ++R+I+ +
Sbjct: 319 NKIRLDTEEQLKEKFPEADTYEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNINCE 378

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCA 384
           V L +  HGS+LF RG TQ    VT  + E     ++ + +++G +  +FM+HY F P A
Sbjct: 379 VDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHYEFPPYA 438

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
           T E+ ++   +RRE+GHG LA +A++PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG 
Sbjct: 439 TNEIGKVTGVNRRELGHGALAEKALYPVIPK--DFPFTIRVTSEVLESNGSSSMASACGG 496

Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTD 497
           SLALMDAGVPIS  VAG+A+GLV   +       D+ +L+DI G ED+ G MDFK+AGT 
Sbjct: 497 SLALMDAGVPISSAVAGVAIGLVTKNNPDKGEIEDYRLLTDILGIEDYNGDMDFKIAGTS 556

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            GITA+Q D+K+ GI   I++ A+QQA   +  IL  M+K +S+ R    E  P VE + 
Sbjct: 557 KGITALQADIKLPGIPIKIVMEAIQQASVAKREILQIMNKTISKPRASRKENGPVVETVQ 616

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--- 614
           +P  +    +G GG  ++ +  +TG  V+  D+ T  + + + + +  AR+ I  +    
Sbjct: 617 VPLSKRAKFVGPGGYHLKKLQAETGVTVSQVDEETFSVFAPTPSAMHEARDFITELCKDD 676

Query: 615 --DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTV 670
                E   +Y   + ++ D G  V  +      L+H +QL   ++   + +  E G  +
Sbjct: 677 QEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEI 736

Query: 671 WVKLLDFDDR-GKIKLSMKVV 690
            VK    D   G+++LS KV+
Sbjct: 737 QVKYFGRDPADGRMRLSRKVL 757


>gi|197100218|ref|NP_001125193.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pongo
           abelii]
 gi|55727278|emb|CAH90395.1| hypothetical protein [Pongo abelii]
          Length = 703

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 225/665 (33%), Positives = 372/665 (55%), Gaps = 37/665 (5%)

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
           F PL V+Y+++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ 
Sbjct: 15  FMPLVVDYRQKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLC 74

Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSL 174
           N++  D  + P V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L
Sbjct: 75  NLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTL 134

Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           +L V+G  +  ++M+E  A  + +     AI  G    + +I+ I +L K        + 
Sbjct: 135 NLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG-----VT 189

Query: 234 SKDFSKLEEEMSQMIKEDLRVSC---------FIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
            +   KL     +++K   +++          +  +K  R + ++ ++         +  
Sbjct: 190 KRTPQKLFTPSPEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFP 249

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             +  EI+  F  +  +V R ++L++  R DGRD  ++R++S +V + +  HGS+LF RG
Sbjct: 250 QADPYEIIESFNVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRG 309

Query: 345 DTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
            TQ +  VT  + E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+G
Sbjct: 310 QTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELG 369

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA +A++PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VA
Sbjct: 370 HGALAEKALYPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVA 427

Query: 461 GIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           G+A+GLV   D       D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI 
Sbjct: 428 GVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIP 487

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             I++ A+QQA   +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  
Sbjct: 488 IKIVMEAIQQASVAKKEILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYN 547

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVV 628
           ++ +  +TG  ++  D+ T  + + + + +  AR+ I  I         E   +Y   + 
Sbjct: 548 LKKLQAETGVTISQVDEETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAVYTATIT 607

Query: 629 KVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKL 685
           ++ D G  V  +      L+H +QL   ++   + +  E G  + VK    D   G+++L
Sbjct: 608 EIRDTGVMVKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRL 667

Query: 686 SMKVV 690
           S KV+
Sbjct: 668 SRKVL 672


>gi|297172161|gb|ADI23142.1| hypothetical protein [uncultured gamma proteobacterium
           HF0770_09E07]
          Length = 442

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/445 (44%), Positives = 281/445 (63%), Gaps = 8/445 (1%)

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAKV 302
           M   ++ DL  +    +K  R +++  +K  ++     E H  + +      F++++  V
Sbjct: 1   MGLWVRGDLVDAFTTTDKKERNEKVSSIKDNLMQDLDEELHDLYTK-----QFKEVEKDV 55

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L+ + R+DGR    VRDI+ +   L   HGS+LF RG+TQAIV  TLG+  D Q 
Sbjct: 56  VRGNVLNDQKRIDGRGMTEVRDITIETNFLPSVHGSALFTRGETQAIVTTTLGSGRDVQT 115

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           VD+L G  +++FM+HYNF   + GE+     P RREIGHG LA+R++   +P    FPY 
Sbjct: 116 VDALQGEIKDNFMLHYNFPSYSVGELGFPMGPKRREIGHGALAKRSLKFGVPSLEDFPYA 175

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEITES+GSSSMA+VCG SLALM AGVPI + VAG+AMGL+K+GD + +L+DI GD
Sbjct: 176 IRVVSEITESNGSSSMASVCGGSLALMAAGVPIKENVAGVAMGLIKEGDKYEVLTDILGD 235

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +G+T +QMD+KI GI+E I+  AL QAK  R+HIL +M  VLS+ 
Sbjct: 236 EDHLGDMDFKVAGTKNGVTGLQMDIKIEGINEEILEKALMQAKDARMHILEKMDAVLSKP 295

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
            L+L    P      +  D+++ VIG GG  I+G+ E+ G  + + D G V + + +   
Sbjct: 296 -LELTSLAPSFTKFKVHKDKVKVVIGKGGSTIKGLQEEFGVTIELQDSGEVSVFAENKEI 354

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
              A+E I  +   PE  K+Y G V KV++FGAFV     +DGL+HISQ   E     +D
Sbjct: 355 ANQAKEKIELLCAEPEEGKVYDGVVAKVVEFGAFVTIMPGKDGLLHISQFK-EDFEHLTD 413

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
           V+ EGDT+ VKL++   +G++KL  
Sbjct: 414 VINEGDTIKVKLVEVGRQGRLKLEF 438


>gi|322378832|ref|ZP_08053258.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
 gi|322380127|ref|ZP_08054375.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
 gi|321147432|gb|EFX42084.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
 gi|321148756|gb|EFX43230.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
          Length = 672

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 242/661 (36%), Positives = 357/661 (54%), Gaps = 40/661 (6%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE  G+  K++   +A+ +D A+L  Y  TV+LA+VV DR   +  DF PL+V Y +R Y
Sbjct: 4   IEINGQEFKIDY--VAKTADSALLYRYKGTVILASVVVDRQHTEA-DFLPLSVQYAQRAY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVG+ P  +LRRE +    E L SR+IDRS+RPLF K Y   TQ+ + V+ +D +S   V
Sbjct: 61  AVGRFPSNFLRREGKMDNFETLTSRLIDRSLRPLFPKGYTYPTQITLLVLSYDYQSDLQV 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMV 188
            ++ AAS AL L+ +  +  +   +   +NG         +   SLDL V G  +A+LM+
Sbjct: 121 CALNAASNALYLANIGVDTTIHAMR---LNG--------TDTAKSLDLLVVGNAEAILMI 169

Query: 189 ELE-----ANQLSEDVVLDAIIFGHNE----CKPVIEAIS---KLAKMCAKEPIVIDSKD 236
           E++      + L E  +LD I   H +    C       +   K   +  K+PI  ++  
Sbjct: 170 EMQIKDSSQHALEESKLLDLIRHAHTQIQEYCMHYYHHFTPHRKPKNLSMKDPIKPNTAL 229

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L      +I E    +  +  +  R  Q+ DL +K+    + E    +  E+    +
Sbjct: 230 IDLLNSRFKAIILE----TSSLMARSERNAQVQDLIQKIAEELNLEGQQVSLEELKLALQ 285

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
                 +R+ +++K+ R DGR    +R I  +  LL   H S LF RG TQA+V  TLG+
Sbjct: 286 TCLYAHLRSEIIEKQQRPDGRTLTQIRPIYIETNLLPACHSSVLFERGHTQALVACTLGS 345

Query: 357 RED-EQYVDSLSGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
             D +Q + +   T  +  FM+HYNF P   GE   MGA SRRE+GHG LA++A+   LP
Sbjct: 346 ENDAKQGLGTYEKTPSKERFMLHYNFPPFCVGEAMPMGALSRRELGHGHLAQKALESTLP 405

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           +  Q P  +R+VSEI ES+GSSSMA+VC  SLAL  AG+ I   VAG+AMGL+ +GD + 
Sbjct: 406 E--QHP-VIRLVSEILESNGSSSMASVCAGSLALKAAGIDIRDLVAGVAMGLMVEGDKYA 462

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDIS  ED  G MDFK+AGT  G+ AMQMD K+ GI    +   L+QAK+ R  IL  
Sbjct: 463 ILSDISALEDMQGDMDFKIAGTHQGVLAMQMDTKLSGICLEWLGEILKQAKQARTVILER 522

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTV 593
           M ++     +   +  P  E   IPP +I  +IG GGK I+ I+++   ++++D   G V
Sbjct: 523 MQEIAQIMPIN-TKAMPISESFYIPPSKISALIGTGGKNIKEILQRFAVQIDLDKQSGQV 581

Query: 594 KIASSSLAEIEAAREMIRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            I     A ++A   ++ S+ ++P     +  +  V KV+DFG FV   G    L+H S 
Sbjct: 582 CIHGIQEAVLKAKDFILESL-EIPSYVAGEQVQAWVKKVVDFGVFVRLSGGGQALLHKSD 640

Query: 652 L 652
           L
Sbjct: 641 L 641


>gi|255030484|ref|ZP_05302435.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           LO28]
          Length = 420

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/419 (45%), Positives = 271/419 (64%), Gaps = 7/419 (1%)

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 2   DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 61

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 62  GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 121

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS----V 294
           +LE E+    +  ++ +    EK  R   I+++K++++  + ++    NE EI+S    +
Sbjct: 122 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEEVKEEILESYKAKELE-NESEILSEVAHI 180

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL
Sbjct: 181 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 240

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 241 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 300

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 301 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 360

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL 
Sbjct: 361 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 419


>gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis]
          Length = 852

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 245/710 (34%), Positives = 389/710 (54%), Gaps = 41/710 (5%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYA 69
           G     ETG++AR ++G+ L   G T VLA         S ++ Q      V+Y+E+ YA
Sbjct: 129 GHTWAFETGKLARLANGSCLVQCGNTTVLAAATCQLPPWSRREAQSL-QFEVDYREKLYA 187

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VG+IPG Y +RE    E+E+L  R I R++RPLF K +  +  V  +V+  D    P V+
Sbjct: 188 VGRIPGTYNKREGTAKEHEVLAGRRIGRALRPLFPKGFALDAAVFASVLSADGGCDPEVM 247

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGS-LDLFVSGTQDA-VL 186
           ++ +ASAAL+ S +P+ GPV  A+V  + +GQ V+ P +++ + + LDL V+ T D  V 
Sbjct: 248 AVSSASAALLCSDMPWAGPVAAARVAMLHDGQLVVGPSVEQQEAAVLDLLVAATADGRVT 307

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFS---KLE 241
           M+E +  Q+ E   L+A+    +  + +I+   +LA+   ++  P  +   D +   K+ 
Sbjct: 308 MLEADGEQVPETQFLNALHLAVSTTQQLIKPQMQLAEQTRRQTRPTQLSGADPAAAPKVA 367

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------------G 289
           E  + +++  LR       K  R   +   K  +++   +  S   E             
Sbjct: 368 ELATPLVEAILRDDKLT--KSTRTIALQQAKDSVLARLKANGSFRTEFARVPGSGCVSPA 425

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           ++   F  + +  +R + +++  R DGR +  VR +  +V  +   HGS+LF RG+TQ++
Sbjct: 426 DLEHAFTAVLSSALRRLAVEEGWRCDGRGAIDVRPVHCEVDSVPVVHGSALFSRGETQSL 485

Query: 350 VVVTLGTREDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
             VT+G R+++Q ++SL G +      ++Y+F P A GE S  G   RRE+GH  LA RA
Sbjct: 486 CTVTVGRRQEQQKMESLLGGEGVKRLFVNYSFPPFAVGETSTSGM--RREMGHSDLAERA 543

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PV+P    FP++LR+ +E   S GSSSMA VCG +LAL DAGVP+   VAG+ +GL+ 
Sbjct: 544 LLPVIPDMQAFPFSLRLNAETLASAGSSSMAAVCGGALALADAGVPLKALVAGVTVGLLT 603

Query: 469 D---GDDFIILSDIS-GDEDHLGHMDFKVAGTDSGITAMQMDMKI-GGISENIMVMALQQ 523
           +   G +  +LS ++ G ED LG MD KVAGT  GITA Q+D+K+ GG+   I+  A+  
Sbjct: 604 ESSWGGELRLLSSVALGMEDQLGDMDLKVAGTSQGITACQLDVKLQGGVPLEILNEAIGL 663

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A RGR  +L  M K L E R   G   P    + +P   +  VIG GG  ++ + E+   
Sbjct: 664 AARGRAKLLGIMEKALPEKR---GASAPMFGSVKVPEAMMGRVIGSGGANLKDMEERLDV 720

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHF--C 640
           +V++ DDG + + + S    +AA   I  +T +  +   +Y+G V ++MDFGA V     
Sbjct: 721 RVDVGDDGVINVFAPSQNGYQAAEARILDLTGESVKEGAVYRGTVTRLMDFGAMVELEPS 780

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           G R  L+HIS++S +RV    DV++ G  V V  +  D +G++KLS K V
Sbjct: 781 GLR-ALLHISEVSAQRVRSIDDVLQIGQQVEVMCVGRDPKGQVKLSRKAV 829


>gi|83318937|emb|CAJ38806.1| polynucleotide phosphorylase protein [Platynereis dumerilii]
          Length = 628

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 217/618 (35%), Positives = 350/618 (56%), Gaps = 30/618 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L L TG+ AR +DG++   +G T VL T V     K   +F PL V+Y+++  A G+IP 
Sbjct: 2   LTLNTGQSARFADGSITGKFGNTSVLVTAVSKG--KSTNNFLPLMVDYRQKAAAAGRIPT 59

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE  P++ E L SRMIDRS+RPLF   Y  +TQ++ N++  D ++ P +VS+ AAS
Sbjct: 60  NHLRRELGPSDKETLTSRMIDRSLRPLFPSGYFVDTQIVCNLLAVDGQNDPDIVSINAAS 119

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEAN 193
           AAL +S +P  GPV   +V +++ + V+NP R +    + DL VS   Q+ V+M+E  A+
Sbjct: 120 AALAVSDIPRFGPVGAVRVGFVDNEIVINPTRREMAHSTXDLVVSAADQNKVVMLEASAD 179

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQMIKE-- 250
            +S+     AI  G  E + +I AI  LAK+  KE   ++ + D   + EE+++ +K   
Sbjct: 180 GISQPNFRHAIKRGVKESQKIITAIKDLAKIYGKEKRRLVQAVD---VPEEIAESVKSLA 236

Query: 251 DLRV----SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
            LR+    S  +  K  R   ++ +++++V      +   +       F ++   + R +
Sbjct: 237 ALRIREIFSDSLHHKISRDMAVNSVREEVVRKLIESNPEVDPSIFQEAFSNLSRSIFRDL 296

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS- 365
           + +  +R DGR    +R I+  V L    HGS++F RG TQ +  VT  + +    VD+ 
Sbjct: 297 IFEYDLRCDGRRLNEIRPINCGVDLFSPLHGSAMFQRGQTQVLCTVTFDSLDSAAKVDAI 356

Query: 366 ---LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
              ++G +  +F +HY F P AT E  R G   RRE+GHG LA +A+  V+P  + FP+T
Sbjct: 357 TALMAGMKEKNFFVHYEFPPYATNETGRTGFAGRRELGHGALAEKALKNVIP--SDFPFT 414

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA---GIAMG--LVKDGD-----D 472
           +R+ +E+ ES+GSSSMATVCG SLALMDAG    +P     G+A G  L +  D     D
Sbjct: 415 IRLSAEVLESNGSSSMATVCGGSLALMDAGSSKLRPKGSSLGVACGKWLTRSDDHGNVSD 474

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+D+ G ED++G MDFK AGT  G+TA+Q D+K+ G+   +++ A ++A  G+  IL
Sbjct: 475 FKVLTDLLGIEDYMGDMDFKYAGTSKGVTALQADVKVPGLPLKVIMEAEERAWEGKTEIL 534

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M   LS+ R      +P  + + +P  +    +G+GG  +R ++ +TG  +   D+  
Sbjct: 535 SIMWNCLSQHRQAKKNNSPVTQDLQVPVTKRSRFVGLGGYNLRKLMAETGVSITPIDETN 594

Query: 593 VKIASSSLAEIEAAREMI 610
            K+ + + + ++ A E I
Sbjct: 595 FKVFAPNQSAMDEASEKI 612


>gi|303286903|ref|XP_003062741.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456258|gb|EEH53560.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 846

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 222/665 (33%), Positives = 343/665 (51%), Gaps = 41/665 (6%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +  ETGR+AR +DGAV+A+ G+  V+   V  R       FFPL V Y+ER  A GKIP 
Sbjct: 88  IAFETGRLARLADGAVMASMGDNRVMCAAVAAREPDPNAGFFPLNVEYRERASAYGKIPS 147

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            + RRE  P + E+L  R++DR+IRPLF K ++N+T V   V+  D    P V+++  AS
Sbjct: 148 TFTRREGAPKDREVLAMRVVDRAIRPLFPKAFRNDTSVQAIVLASDRSLDPSVLAVNGAS 207

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVELEA 192
           AAL  S +P+ GPV   +V  +N   V+    D+    +   +L  +GT+D  LM+E  A
Sbjct: 208 AALHASSIPWNGPVGAVRVAVVNDGEVIVTNPDDATRAESEFELLYAGTEDRALMIEASA 267

Query: 193 NQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249
            +   + E VV  A+   H+  K +I    +L +   KE   +  +  +           
Sbjct: 268 TKRGGVPEAVVAKALRAAHDAAKLLIAPQRRLRERVGKEKRPLPEEADATAAAAAKLKAL 327

Query: 250 EDLRVSCF----IPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVVR 304
              R++      I  K  R + + +LK ++    ++ H        + + +    ++ +R
Sbjct: 328 AVPRLTRLYELKIQSKSERGRMMAELKAEIAEELATSHGMELTPQALDAAYLAASSRAMR 387

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +K VR+DGR    +R ++A+VG +   HGSS+F RG+TQA+  VT+G+ +D Q +D
Sbjct: 388 DLVFEKGVRVDGRKLTELRSLAAEVGAIPVVHGSSVFERGNTQALATVTIGSVDDFQRLD 447

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +  G +   FM+HY F   +  E  R G  SRREIGHG LA +++  ++P    +P+ +R
Sbjct: 448 APVGPKNKKFMLHYAFPSFSINETPRRGGLSRREIGHGALAEKSLAGMIPDDDAYPFAVR 507

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSD 478
           + +E  ES+GSSSMA VC  SLALMDAGVPI++ V  I++GLV D D+        +LSD
Sbjct: 508 VNAETLESNGSSSMAAVCAGSLALMDAGVPIAEHVGAISVGLVMDEDEDGNVTRHALLSD 567

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFK+AGT  GIT +Q                L +A   R  +++EM   
Sbjct: 568 IMGLEDVLGDMDFKIAGTRGGITGIQAP--------------LDEASVARNQVIDEMYAA 613

Query: 539 LSESRL--QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD------- 589
           ++  R   ++  FTPR   + +    +  +IG  G  I+ I   T AK++I         
Sbjct: 614 IARPREADEMSAFTPRYATLEMDQKFVGKLIGPQGSTIKNIEATTSAKISIRQAEPAAGE 673

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
               V I + S   +  A E +  +T   E    Y   V+    FG  V      +GL+H
Sbjct: 674 LAARVGIFAPSKDALALAVEQVELLTKEVEKGATYGATVIDTKPFGWIVRAPTGCEGLLH 733

Query: 649 ISQLS 653
           +++ S
Sbjct: 734 VTEYS 738


>gi|87311732|ref|ZP_01093847.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
 gi|87285516|gb|EAQ77435.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
          Length = 385

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 176/342 (51%), Positives = 234/342 (68%)

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           +GT  DEQ VD L       FM+ YNF   + GE   +  P RREIGHG LA R++ PVL
Sbjct: 1   MGTSRDEQRVDGLQEEYAKKFMLDYNFPSYSVGECRPIRGPGRREIGHGALAERSVKPVL 60

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R++S+I ES+GSSSMA+VC ++L LM AGVPIS PVAGI++GLVK+GDDF
Sbjct: 61  PGPDEFPYTIRVISDILESNGSSSMASVCAATLGLMAAGVPISNPVAGISVGLVKEGDDF 120

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I+L+DI GDEDH G MDFK+AGT +GIT +Q+D+KI GIS  I+   L+Q++  R+ IL 
Sbjct: 121 ILLTDILGDEDHFGDMDFKIAGTQNGITGIQLDLKIAGISAEIIKATLEQSRIARIEILR 180

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M   +S  + +   + PR+    I P++I  +IG GGK IRGI E+TGA +++ +DGTV
Sbjct: 181 TMLTTISAPKDEPSIWAPRLLSTKINPEKIGLLIGPGGKTIRGIQEETGATIDVQEDGTV 240

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +ASS+L   EAA   +++IT   EV KIY+G+V  V DFGAFV     RDGL HIS+LS
Sbjct: 241 LVASSTLEWAEAALARVQAITGEVEVGKIYEGRVTSVKDFGAFVEILPGRDGLCHISELS 300

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            E V   +DVVK GD + VK+L  D+  ++KLS K +D   G
Sbjct: 301 NEYVGNVNDVVKVGDMLKVKVLLVDEHDRVKLSHKAIDAPEG 342



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y   +Y+VG+      R    P   EI    + +RS++P+      +E    I V+  
Sbjct: 23  LDYNFPSYSVGE-----CRPIRGPGRREIGHGALAERSVKPVLPG--PDEFPYTIRVISD 75

Query: 121 DLES--SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL--DEDQ-GS 173
            LES  S  + S+ AA+  LM +G+P   PV G  V  +     ++L   +  DED  G 
Sbjct: 76  ILESNGSSSMASVCAATLGLMAAGVPISNPVAGISVGLVKEGDDFILLTDILGDEDHFGD 135

Query: 174 LDLFVSGTQDAVLMVELE 191
           +D  ++GTQ+ +  ++L+
Sbjct: 136 MDFKIAGTQNGITGIQLD 153


>gi|307700019|ref|ZP_07637068.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mobiluncus mulieris FB024-16]
 gi|307614780|gb|EFN94000.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mobiluncus mulieris FB024-16]
          Length = 542

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 310/528 (58%), Gaps = 31/528 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 17  KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM    + +  V
Sbjct: 77  AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT---QD- 183
           V++ A+S +  L+GLPF GP+ G ++  I+GQ+V  P   + +Q + ++ V+G    +D 
Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196

Query: 184 AVLMVE-------LEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKE------- 228
           A++MVE        E  Q  +    + ++ G  E  KPVI  + +     A +       
Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW- 286
            P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E   + 
Sbjct: 257 YPLFPDYED--NHFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314

Query: 287 -NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F+ ++ K+VR  +L +  R+DGR  + +R ++A+V +L R HGS+LF RG+
Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIGHG LA
Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
             A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+AGIAMG
Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494

Query: 466 LVKD-GDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           L+ + G+D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K
Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTK 542


>gi|289607403|emb|CBI60808.1| unnamed protein product [Sordaria macrospora]
          Length = 368

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/384 (46%), Positives = 249/384 (64%), Gaps = 20/384 (5%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    ++  G+ L LETGR+ARQ+DGAV+AT GETVVL  V   RS+K+GQDFFPLT
Sbjct: 1   MFDIKKSTMDLGGKTLTLETGRVARQADGAVIATLGETVVLCAVTAARSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +V+M+AASAAL +SG+PF GP+   +V YI+G+YVLNP LD+  +G LDL V+
Sbjct: 121 DGENEPDIVAMIAASAALTISGVPFMGPIGAGRVGYIDGEYVLNPTLDQVKEGDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T DAV+MVE EA +LSE+V+L A++F H+  K +++ I  LA+  AK+P  +    D S
Sbjct: 181 ATGDAVMMVESEAKELSEEVMLGAVVFAHDASKKIVDCIIDLAEQAAKDPWELAPVADQS 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
             ++++  +I +DL  +  + +K  R   I+D   +  +   +                 
Sbjct: 241 AAKKKLKSLIGKDLTAAYKLTDKQARQNAINDAALRHATPSPTSR--------------- 285

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R  + D + R+DGRD++TVR I A V  L R HGS+LF RG+TQAI   TLGT++
Sbjct: 286 --KAIRRSISDGR-RIDGRDTKTVRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKD 342

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLP 382
            EQ +D L+G     FM+HYNF P
Sbjct: 343 AEQMIDGLNGLHYERFMLHYNFPP 366


>gi|254479104|ref|ZP_05092456.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034953|gb|EEB75675.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 333

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/314 (52%), Positives = 228/314 (72%)

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPYT+R+VSE+  S+G
Sbjct: 1   MHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSNG 60

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           S+S A+VCGS+LALMDAGVPI  PVAGIAMGL+K+ D+ +IL+DI G ED LG MDFKVA
Sbjct: 61  STSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLILTDIQGIEDFLGDMDFKVA 120

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           GT+ G+TA+QMD+KI GI  +I+ MAL++A++ RL++L +M +V+ E R +L ++ PRV 
Sbjct: 121 GTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIKEPRKELSKYAPRVV 180

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            M + P++IR++IG  GK I  I+ +TG K++I++DG + I + +L   E A++MI +IT
Sbjct: 181 RMVVNPEKIRDIIGPAGKTITKIISETGVKIDIEEDGRLYITAPNLEAGERAKQMIEAIT 240

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV  IY G+V+++  FGAFV     ++GLVHIS LS +RV +  DVVK GD + VK+
Sbjct: 241 KDIEVGGIYLGKVLRIAPFGAFVEIAPGKEGLVHISNLSKKRVRRVEDVVKVGDNILVKV 300

Query: 675 LDFDDRGKIKLSMK 688
            + D  G+I LS K
Sbjct: 301 TEIDKLGRIVLSRK 314


>gi|307202592|gb|EFN81927.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Harpegnathos saltator]
          Length = 618

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 198/594 (33%), Positives = 334/594 (56%), Gaps = 30/594 (5%)

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QD 183
           P V+++  AS AL +S +P+ GPV   ++  IN   ++NP R     G L++ ++ T Q+
Sbjct: 10  PDVIAINGASTALSISDIPWNGPVGAVRIGMINNDILINPTRRQMQDGILNIIITATKQN 69

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID------SKDF 237
            ++M+E  AN++ E  +  AI  G  EC+ ++ +I KL K C K    ++      + + 
Sbjct: 70  LIIMLEGSANEVLEQDLKKAIKLGVKECQHIVASIMKLQKACGKTKREVEISNQQEADNL 129

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L +E+S+   +D+  S +  +K  R   I+DL+  ++   +++++  N   +  +F  
Sbjct: 130 TNLVKELSETKLQDI-FSNYTHDKSSRDNAINDLRSSVIKTLTTDNADVNIKLVEKLFTK 188

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I   V R+++ +K VR DGR    +RDIS QV L    HGS++F RG TQ +  VTL + 
Sbjct: 189 ITKDVFRSLVFEKNVRCDGRSLSDIRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSL 248

Query: 358 EDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           E    +D+    +SG +  +F +HY F P AT E+  +G   RRE+GHG LA + + P++
Sbjct: 249 ESAFKMDAVSMLISGMKEKNFFLHYEFPPYATNEIGPVGRVGRREMGHGALAEKGLRPII 308

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----- 468
           P+   +P+T+R+ SE+ ES+GSSSMAT+CG SLAL+DAG+PIS   AG+A+GL+      
Sbjct: 309 PK--DYPFTIRLTSEVLESNGSSSMATICGGSLALLDAGIPISSSAAGVAIGLLTKYDEA 366

Query: 469 --DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
             D +D+ IL+DI G ED+ G MDFK+AGT  G TA+Q D+KI G+   I++  +Q A  
Sbjct: 367 KTDIEDYKILTDILGIEDYFGDMDFKIAGTKRGFTALQADIKIPGVPLKIIMECVQHAST 426

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            +  I+  M+KV+   +    +  P +E + +P  Q    +G+GG  ++ I+ +TG  ++
Sbjct: 427 AKTEIIKIMNKVIQTPQQIKKDKMPVLENLEVPIHQRGKFLGVGGTNLKKILLETGVHIH 486

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-FC 640
             D+    + + +   +  A+EMI++I +       E   IY  ++V++ + G  V  + 
Sbjct: 487 AHDENFYSMFAPNEDAMAEAKEMIKNILEKDREPTLEFGAIYTARIVEIRETGVMVTLYS 546

Query: 641 GARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
                L+  SQL   R+   S + +  G  + VK    D   G+I++S KV+ +
Sbjct: 547 NMMPVLLPNSQLDQRRIHHPSALNLAVGQEIQVKYFGRDPVSGQIRISRKVLQE 600


>gi|302852014|ref|XP_002957529.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
           nagariensis]
 gi|300257171|gb|EFJ41423.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
           nagariensis]
          Length = 830

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/441 (42%), Positives = 259/441 (58%), Gaps = 39/441 (8%)

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F  ++++V+R+++L++ +R DGR    +R I+++ GLL RTHGS+LF RG+TQAI V TL
Sbjct: 337 FPSVESRVMRSLVLEEGIRADGRRVTDIRPIASRAGLLPRTHGSALFTRGETQAICVATL 396

Query: 355 GTREDEQYVDSLSGTQRND-----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           GT  D    D++   + +D     F + Y+F P + GE  R+G P RRE+GHG LA+RA+
Sbjct: 397 GTASDALRADTMRKAEEDDGGEGRFYLQYHFPPSSVGETGRVGGPGRRELGHGELAQRAL 456

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-- 467
            P++P   QFPYT+R+ S ITES+GSSSMA+VCG  LAL DAGVPI +PVAGIAMGL+  
Sbjct: 457 APIVPNQEQFPYTVRLESTITESNGSSSMASVCGGCLALQDAGVPILRPVAGIAMGLILE 516

Query: 468 ---KDGDD----------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
              ++ D            ++LSDI G ED LG MDFKVAG    ITA QMD+K+ GI+ 
Sbjct: 517 PAAQNPDPESGSGSSSPRHVVLSDILGSEDALGDMDFKVAGDTDSITAFQMDIKVEGITL 576

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV-----------EIMA--IPPD 561
            IM  AL QA+ GR HIL +M +       +L    PR+           E+M   + P 
Sbjct: 577 EIMSSALNQAREGRRHILQQMERCSPPPAGRLNAHAPRLLRTMVGGGPRGELMCEEVDPA 636

Query: 562 QIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +I  +IG GG+ I+ + E TG   + +D+DG V + S S      A E+I  +   PE  
Sbjct: 637 KIGAIIGTGGRTIKQLKEVTGVTAIELDEDGRVNVVSPSQEAAARAMELINLLVSDPEPG 696

Query: 621 KIYKGQVV-KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + + + V  V  FG FV  C  R GLVH+S+L+    +    VV  GD + V ++  D 
Sbjct: 697 TVLRQRAVTSVAAFGCFVELCPGRQGLVHVSELADPPPSDVGSVVAVGDKIDVMVMSCDG 756

Query: 680 RGKIKLSMKVV---DQNTGKP 697
            GK+ LS + V   DQ  G P
Sbjct: 757 -GKVALSRRAVALLDQGEGYP 776



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 138/228 (60%), Gaps = 9/228 (3%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +AT GET++ AT     S      F PLTVNY ER  A G+  GGY++R+ RP ++E+L+
Sbjct: 1   MATCGETMIYATACCSASPTGDGSFLPLTVNYAERFSAAGRTSGGYVKRDGRPRDSEVLV 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           SR++DR +RP+F K + NETQV+  V+ +D   +P  +++ AA+AAL++S +P +  V G
Sbjct: 61  SRLVDRPLRPMFGKGWANETQVLEWVLSYDGIHNPEPIAITAAAAALLISDIPLKKAVAG 120

Query: 152 AQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHN 209
            +V  +  + YV+NP +++ + S LDL V+GT+DA+LM+E   + L+E+ +++A+  G  
Sbjct: 121 VRVGLLPDEGYVVNPTVEQMKVSRLDLMVAGTRDAILMIEGFCDFLTEEQMIEALAVGSQ 180

Query: 210 E----CKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253
                C  + +   K+ K    E +V    D   LEE +  ++   LR
Sbjct: 181 AITSLCLQMEDWAKKVGKPKRTESVVSVPDD---LEERVMALVGPQLR 225


>gi|27262520|gb|AAN87541.1| Polyribonucleotide nucleotidyltransferase [Heliobacillus mobilis]
          Length = 445

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/409 (42%), Positives = 260/409 (63%), Gaps = 3/409 (0%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L +ETGR+A+Q+ G+V+A YG+TVVL+T    +  + G DFFPLTV+Y+ER YAVGKIPG
Sbjct: 34  LTVETGRVAKQAGGSVMARYGDTVVLSTATASKEPRPGIDFFPLTVDYEERLYAVGKIPG 93

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RPTE  IL SR+IDR IRPLF K ++N+ QV+  V+  D +  P +V M+ AS
Sbjct: 94  GFIKREGRPTEKAILSSRLIDRPIRPLFPKGFRNDVQVVSTVLSVDQDCPPDIVGMIGAS 153

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            AL LS +PFEGP+ G  V  ++G+ ++NPR++E + S + L V+GT+DAV+MVE  AN+
Sbjct: 154 CALCLSDVPFEGPIGGVVVGRVDGKLIINPRMEEAEKSDMHLVVAGTKDAVMMVEAGANE 213

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLR 253
           + E+ +++AI+FGH E + +++   ++ K   K    VI  K   ++++ + + + E + 
Sbjct: 214 IPEEDMIEAIMFGHQEIQRIVQFQEEMMKTAGKPKREVILHKVNPEIDQAVRRFVGEKML 273

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
            +   P+K  R   +D +K + V     +     +G I+ V + +  ++VR ++   K R
Sbjct: 274 EAIQNPDKLSRQADMDKVKAETVEAILPQFPD-GQGAILEVLDTMVKEIVRKLITVDKQR 332

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
            DGR  + +R I+ +VG+L RTHGS+LF RG TQ + V TLGT  D Q +D L   +   
Sbjct: 333 PDGRKVDEIRPITVEVGILPRTHGSALFTRGQTQVLNVCTLGTISDLQILDGLGVEESKR 392

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +M HYNF   + GE   M  P RREIGHG LA RA+ PV+P     P T
Sbjct: 393 YMHHYNFPSYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDAVPVT 441


>gi|46201049|ref|ZP_00055817.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 354

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/348 (49%), Positives = 230/348 (66%), Gaps = 17/348 (4%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+VH  EI W GR L LETG+IARQ+DGAVL TYGET VL TVV  +S K G DFFPLT
Sbjct: 3   MFNVHRKEITWGGRKLVLETGKIARQADGAVLVTYGETSVLCTVVGAKSQKPGIDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF+  ++NE QV+  V+ H
Sbjct: 63  VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS 179
           DLE+ P + ++V  SAAL +SGLPF GPV  A+V Y+NG+YVLNP + D  +  LDL V+
Sbjct: 123 DLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVNGEYVLNPLVGDLPKSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA QLSED++L A++FGH   + VI+AI +LA+ CAK+P      D  +
Sbjct: 183 GTVEGVLMVESEAKQLSEDIMLGAVMFGHRSFQAVIQAIIELAEECAKDPW-----DLPE 237

Query: 240 LEEEMSQMIKE--DLRVSCFIPEKYVRCKQID------DLKKKMVSYFSSEHSSWNEGEI 291
              E++ +  +  D  V   + E Y   K+ D       +KKK ++  +        G  
Sbjct: 238 PPAEVAVVTGKFNDAGVPAELAEAYKIIKKQDRYAAVGAIKKKALALLTEAAEIAVAG-- 295

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
             + + ++A VVR  +L   VR+DGRD++TVR I  +VG+L R HGS 
Sbjct: 296 -GILKHLEADVVRGNILKTGVRIDGRDTKTVRAIEVEVGVLPRAHGSG 342



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 23/212 (10%)

Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R +  + G + R   G+ L   G+T  +  V +G +  +  +D    T      ++Y   
Sbjct: 16  RKLVLETGKIARQADGAVLVTYGETSVLCTV-VGAKSQKPGIDFFPLT------VNYQEK 68

Query: 382 PCATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--G 434
             A G++      R G PS +E    RL  R I P+      F   +++V  +   D   
Sbjct: 69  AFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADG--FRNEVQVVCTVLSHDLEN 126

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
              +A + G+S AL  +G+P   PV    +G V +G+   +L+ + GD      +D  VA
Sbjct: 127 DPDIAALVGTSAALTISGLPFMGPVGAARVGYV-NGE--YVLNPLVGDLPK-SDLDLVVA 182

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           GT  G+  ++ + K   +SE+IM+ A+    R
Sbjct: 183 GTVEGVLMVESEAK--QLSEDIMLGAVMFGHR 212


>gi|115534063|ref|NP_497324.3| hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
          Length = 738

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 234/726 (32%), Positives = 377/726 (51%), Gaps = 55/726 (7%)

Query: 5   HTVEIEWAGRP------------LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD 52
           HT E   AGR             ++L+ G +AR +   V+A++G+  V+ATVV  +S + 
Sbjct: 15  HTKEYRLAGREQSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQG 74

Query: 53  GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNET 111
                PL V Y+    A+G+IP  +LRRE   ++NEILISR IDRSIRPL     Y  ET
Sbjct: 75  DGSGVPLQVEYRPSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY--ET 132

Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE- 169
           Q+I   +  D  +   ++ + AAS AL +S   + GP+   +V     G + +NP  +E 
Sbjct: 133 QIICKPLALDENADQIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEEL 192

Query: 170 DQGSLDLFVS-GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + SL+L V+    +  +M+EL+  + S + +  A+         + EA+ +L      E
Sbjct: 193 REASLNLIVAMRKHEKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAEPKDE 252

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHS 284
              + S+DFS LE  + +  +E  R+   I +    K  R  +I  + +++ +       
Sbjct: 253 ---LASEDFSGLERLLEETARE--RIYYVITDAGHDKISRDMEIKAIFEEICA--EKAFQ 305

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  +  I   +  +  KV+R   L   +R DGR  +  R I+  V + ++ HG S+F RG
Sbjct: 306 TCEKDAIYRTYSTLVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRG 365

Query: 345 DTQAIVVVTLGTREDEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIG 400
            TQ +  VT  +     + DS++   G+QR   FM+HY F   A  E     + +RREIG
Sbjct: 366 QTQVMSTVTFDSPAAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIG 425

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA +++  + P  A FPY  R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    A
Sbjct: 426 HGALAEKSLKNLFP--ADFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAA 483

Query: 461 GIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           G+A+GL+ D  +    + +L+DI G ED+ G MDFKVAGT  G TA Q+D+K GG++   
Sbjct: 484 GVAIGLISDEAEPETKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQ 543

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  +LQ A+ G  H+L +MS +    R Q     P ++ M I P +   +    G   + 
Sbjct: 544 LTESLQAARAGIDHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKL 603

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN--------KIYKGQVV 628
           I  +TG K++ +D+  + + +    +++ A +M   + DV E N         I + ++V
Sbjct: 604 IEAETGVKISAEDEAHISLLAQDKEKLQKAMDM---MNDVLESNSTLDFAFGSIVQAEIV 660

Query: 629 KVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDDR-GKIK 684
           ++++ G ++   G +R   +  + LS   V +  DV  +K GD + V     D+  G I+
Sbjct: 661 EIIERGVYLTLPGSSRRIFMSNNHLSLNPV-RHPDVLGLKIGDKMSVHWFGRDEHTGNIR 719

Query: 685 LSMKVV 690
           LS K +
Sbjct: 720 LSRKTL 725


>gi|196007348|ref|XP_002113540.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
 gi|190583944|gb|EDV24014.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
          Length = 741

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/663 (31%), Positives = 344/663 (51%), Gaps = 72/663 (10%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +K   G++A  +DG+VL   G T VL T V  R+      F PL V+Y+E+  A GKIP 
Sbjct: 54  IKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGFAPLRVDYREKASATGKIPV 113

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            + +RE  P+E EIL SR IDRSIR  F +    E Q++ ++M  D E    +V  +   
Sbjct: 114 NFFKRELGPSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDT-IVPAINGG 172

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDAVLMVELEANQ 194
           A                +V YIN + ++NP R++  Q  LDL +  +   ++M+E  A++
Sbjct: 173 AV---------------RVGYINDEVIINPTRVELYQSKLDLVIVASAKGLVMLEGTASE 217

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ----MIKE 250
           L +  VL AI +G  E + V++A+        K+   +    F +L+E + +    +I +
Sbjct: 218 LPDAGVLKAITYGLEEAQNVVKAVEDFGHRYGKDKTNLT---FYRLDESIKEGAYNLIGD 274

Query: 251 DLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
            +   +  F  +K  R +    +  +          + +  ++   F  +  + +   ++
Sbjct: 275 QINDIMLDFSHKKLSRDRAARKVVDENFKTLQEMFPNADNFQLSDSFSSVTKRCITQNVM 334

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
            K +R DGR    +R I A++ +    HGSSLF RG++Q                     
Sbjct: 335 TKSIRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ--------------------- 373

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                      F P A  E+ R+   SRREIGHG LA+ A+  V+  +  FP+T+R+  +
Sbjct: 374 -----------FPPYANNEIGRVMENSRREIGHGTLAKNALRSVV--SDDFPFTVRLTGQ 420

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSDISGD 482
           +  S+GS+SMA+ CG SLALMDAGVPIS+ +AG+AMGLV +  D      + IL+DI+G 
Sbjct: 421 VLMSNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANPSDDGSKFNYKILTDIAGI 480

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED+ G MDFK+AG+  GIT++Q D K+ G+S  ++  A++++   R  +L+ M  V+ + 
Sbjct: 481 EDYFGEMDFKIAGSREGITSLQADFKVTGVSMELIEEAIKKSAVARGKVLDIMYGVIDKP 540

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           RL +    P  +I+ +P  +  +++G+GG  I+G+ E+ G  +N  D+  V I + S   
Sbjct: 541 RLDVKSSAPVFDIVDVPAGKRFSIVGLGGVTIKGLQEEYGCDINFVDEDKVSIYAPSAKA 600

Query: 603 IEAAREMIRSI-TDVPE----VNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTER 656
           +   ++ I  +  D+ E     ++IY G++V + +FG  +      +  L+H+SQL   R
Sbjct: 601 LANVKQRIEELMADLKEPDLKFSQIYTGKIVDIKNFGVMLEMEPNTQPILLHVSQLDHRR 660

Query: 657 VAK 659
           V++
Sbjct: 661 VSR 663


>gi|332017453|gb|EGI58176.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Acromyrmex echinatior]
          Length = 616

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 208/597 (34%), Positives = 328/597 (54%), Gaps = 28/597 (4%)

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT- 181
           + P V+++  ASAAL +S +P+ GPV   ++  I+ + ++NP   + Q S L+L V+   
Sbjct: 8   NDPDVIAINGASAALSVSDIPWNGPVGAVRLGMIDNEVIINPTRRQIQDSMLNLIVTAAK 67

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS---KDFS 238
           Q+ ++M+E  AN++ E  +  AI  G  EC+ ++ AI+KL K C K    I++   ++  
Sbjct: 68  QNLIIMLEGSANEILEPNLKKAIKQGVKECQNIVAAITKLQKTCGKLKRKIETTEQQEDD 127

Query: 239 KLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            L+  + ++ +E L+   S    +K  R   ++DL+  ++    +++   +      +F 
Sbjct: 128 NLKSSVKELSEEKLQDIFSNHTHDKISRDMAVNDLRNSVIETLRNDNVDLDVKLAEKIFG 187

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I   V RT++L+K VR DGR    +RDIS QV L    HGS++F RG TQ +  VTL +
Sbjct: 188 KIVKDVFRTLILEKDVRCDGRSPSHLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDS 247

Query: 357 REDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E+   +D+    +SG +  +F +HY F P AT E        RRE+GHG LA +A+ PV
Sbjct: 248 LENALKMDATSMLISGVKEKNFFLHYEFPPYATNETGNSTRVGRRELGHGALAEKALRPV 307

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           LP+   +P+T+R+ SE+ ES+GSSSMATVCG SLAL DAG+PIS   AG+A GLV   + 
Sbjct: 308 LPK--DYPFTIRLTSEVLESNGSSSMATVCGGSLALFDAGIPISSAAAGVAFGLVTKYNE 365

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ IL+DI G ED+LG MDFK+AGT  G TA Q D+KI GI   I++  L +  
Sbjct: 366 TNTQIEDYKILTDILGIEDYLGDMDFKIAGTKGGFTAFQADIKIPGIPLKIIMECLDKTT 425

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +L I+  M+KV+   R    +  P V+ + +P  Q    +G+GG  ++ I  +TG  +
Sbjct: 426 NAKLEIIKIMNKVIRAPRQTKKDKMPVVDNLEVPVYQRGKFLGVGGMNLKKIFLETGVHI 485

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQVVKVMDFGAFVH-F 639
              D+ T  I + +   +  A+E+I  I       + E   IY  ++V++ + G  V  +
Sbjct: 486 YPYDENTYSIFAPNEDAMTEAKEIIEGILQKDREPILEFGAIYTARIVEIREVGIMVTLY 545

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
                 L+  SQL   ++   S +  E G  + VK    D   G+I++S KV+   T
Sbjct: 546 SNMIPVLLPNSQLDQRKIHHPSALGLEVGQEIQVKYFGRDPVSGQIRISRKVLQAPT 602


>gi|28174955|gb|AAH27228.2| Pnpt1 protein [Mus musculus]
          Length = 647

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 207/622 (33%), Positives = 345/622 (55%), Gaps = 35/622 (5%)

Query: 98  SIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           SIRPLF   Y  +TQV+ N++  D  + P ++++  AS AL LS +P+ GPV   ++  I
Sbjct: 1   SIRPLFPAGYFYDTQVLCNLLAVDGINEPDILAVNGASVALSLSDIPWNGPVGAVRIGMI 60

Query: 158 NGQYVLNP-RLDEDQGSLDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI 215
           +G+ V+NP R +    +L+L V+G  +  ++M+E  A  + +     AI  G    + +I
Sbjct: 61  DGECVVNPTRREMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQII 120

Query: 216 EAISKLAK---MCAKEPIVIDSKDFSKLEE--EMSQMIKEDLRVSCFIP---EKYVRCKQ 267
           + I +L K   +  + P     K F+   E  + +++I  +   + F     +K  R + 
Sbjct: 121 QGIQQLVKEIGVAKRTP----QKIFTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEA 176

Query: 268 IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           ++ ++     +   +    ++ EI+  F  +  +V R+++L++  R DGRD  ++R+IS 
Sbjct: 177 VNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILNEYKRCDGRDLTSLRNISC 236

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED----EQYVDSLSGTQRNDFMMHYNFLPC 383
           +V + +  HGS+LF RG TQ +  VT  + E     +Q + +++G +  +FM+HY F P 
Sbjct: 237 EVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPY 296

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           AT E  ++   +RRE+GHG LA +A+ PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG
Sbjct: 297 ATNETGKVTGVNRRELGHGALAEKALCPVIPK--DFPFTIRVTSEVLESNGSSSMASACG 354

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGT 496
            SLALMDAGVPIS  VAG+A+GLV   +       D+ +L+DI G ED+ G MDFK+AGT
Sbjct: 355 GSLALMDAGVPISSAVAGVAVGLVTKTNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 414

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           + GITA+Q D+K+ G+   I++ A+QQA   +  IL  M+K +S+ R    E  P VE +
Sbjct: 415 NKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETV 474

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-- 614
            +P  +    +G GG  ++ +  +TG  ++  D+ T  I + +   +  AR+ I  I   
Sbjct: 475 KVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRD 534

Query: 615 ---DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDT 669
                 E   +Y   + ++ D G  V  +      L+H SQL   ++   + +  E G  
Sbjct: 535 DQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQE 594

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK    D   G+++LS KV+
Sbjct: 595 IQVKYFGRDPADGRMRLSRKVL 616


>gi|156311439|ref|XP_001617784.1| hypothetical protein NEMVEDRAFT_v1g47702 [Nematostella vectensis]
 gi|156195791|gb|EDO25684.1| predicted protein [Nematostella vectensis]
          Length = 443

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/453 (41%), Positives = 277/453 (61%), Gaps = 27/453 (5%)

Query: 107 YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR 166
           Y  ETQV+I +M HD    P  ++ +AASAAL +S +PF   +   +V  ++G +++NP 
Sbjct: 2   YHAETQVMIQLMSHDENVMPDALAGLAASAALAVSDIPFYNLISEVRVARVDGNFIINPS 61

Query: 167 LDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            ++   S LD+ +  + D+V MVE E  ++SE  +++AI F H   K  I A  KL    
Sbjct: 62  REQLATSDLDMMIGASMDSVAMVEGEMKEISEAEMIEAIKFAHEAIKIQITAQEKLRA-- 119

Query: 226 AKEPIVIDSKDFSKLE-EEMSQMIKEDLRVSCFIPEKYV-----------RCKQIDDLKK 273
                 I S  + + E E   + +   ++ + +  +KY            R ++  ++K+
Sbjct: 120 -----AIGSPAYREYEGEPEDEAVYAKIKAASY--DKYYAIAESASAKSERGEKFAEIKE 172

Query: 274 KMVSYFSSEHSSWNE--GEIVSVF-EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           ++ + F+ E  + N    E+++ +    Q + VR V+L+K  R+DGR +  +R I  +V 
Sbjct: 173 EVKALFTEEDLAENPDLAELINKYIYKTQKEAVRNVILEKGTRLDGRKTTEIRPIWCEVD 232

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
            L  THGS++F RG+TQA+  VTLGT  +   +D  S      F +HYNF P +TGE   
Sbjct: 233 YLPSTHGSAIFTRGETQALATVTLGTSREANQIDLPSEQGEETFYLHYNFPPFSTGEARP 292

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +   SRRE+GHG LA+RA+  ++P  A  PYT+R+VSE+ ES+GSSSMATVC  +LA+MD
Sbjct: 293 LRGTSRREVGHGNLAQRALKNMIP--ADCPYTVRVVSEVLESNGSSSMATVCSGTLAMMD 350

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           AG+ + KPV+GIAMGL+ DG++F +LSDI GDEDHLG MDFKV GT  GITA QMD+KI 
Sbjct: 351 AGIQMIKPVSGIAMGLITDGNNFAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKID 410

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           G+  +IM  AL QA+ GRLHIL ++ + L++ R
Sbjct: 411 GLRYDIMEQALSQAREGRLHILGKLVETLAQPR 443



 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+  E   +   + G+ + T GET  LATV    S +  Q   P +   +E  Y     
Sbjct: 225 RPIWCEVDYLP-STHGSAIFTRGETQALATVTLGTSREANQIDLP-SEQGEETFYLHYNF 282

Query: 74  PGGYLRRESRP----TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           P  +   E+RP    +  E+    +  R+++ +         +V+  V++ +  SS  + 
Sbjct: 283 P-PFSTGEARPLRGTSRREVGHGNLAQRALKNMIPADCPYTVRVVSEVLESNGSSS--MA 339

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDLFVSGTQDA 184
           ++ + + A+M +G+    PV G  +  I   N   VL+  L DED  G +D  V+GT D 
Sbjct: 340 TVCSGTLAMMDAGIQMIKPVSGIAMGLITDGNNFAVLSDILGDEDHLGDMDFKVTGTADG 399

Query: 185 VLMVELE 191
           +   +++
Sbjct: 400 ITACQMD 406


>gi|330981096|gb|EGH79199.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 288

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/277 (57%), Positives = 207/277 (74%)

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP    FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+
Sbjct: 2   MLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGE 61

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F  L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+I
Sbjct: 62  KFANLTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNI 121

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M++++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG
Sbjct: 122 LGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDG 181

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           ++KI   S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS 
Sbjct: 182 SIKIFGESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISM 241

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           LS  RV K +D++KEG  V V +LD D+RG+IKLS+K
Sbjct: 242 LSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIK 278


>gi|18250193|gb|AAK73855.2|AC092690_1 Hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
          Length = 745

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 214/644 (33%), Positives = 339/644 (52%), Gaps = 42/644 (6%)

Query: 5   HTVEIEWAGRP------------LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD 52
           HT E   AGR             ++L+ G +AR +   V+A++G+  V+ATVV  +S + 
Sbjct: 15  HTKEYRLAGREQSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQG 74

Query: 53  GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNET 111
                PL V Y+    A+G+IP  +LRRE   ++NEILISR IDRSIRPL     Y  ET
Sbjct: 75  DGSGVPLQVEYRPSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLPGNSY--ET 132

Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE- 169
           Q+I   +  D  +   ++ + AAS AL +S   + GP+   +V     G + +NP  +E 
Sbjct: 133 QIICKPLALDENADQIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEEL 192

Query: 170 DQGSLDLFVS-GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + SL+L V+    +  +M+EL+  + S + +  A+         + EA+ +L      E
Sbjct: 193 REASLNLIVAMRKHEKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAEPKDE 252

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHS 284
              + S+DFS LE  + +  +E  R+   I +    K  R  +I  + +++ +       
Sbjct: 253 ---LASEDFSGLERLLEETARE--RIYYVITDAGHDKISRDMEIKAIFEEICA--EKAFQ 305

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  +  I   +  +  KV+R   L   +R DGR  +  R I+  V + ++ HG S+F RG
Sbjct: 306 TCEKDAIYRTYSTLVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRG 365

Query: 345 DTQAIVVVTLGTREDEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIG 400
            TQ +  VT  +     + DS++   G+QR   FM+HY F   A  E     + +RREIG
Sbjct: 366 QTQVMSTVTFDSPAAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIG 425

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA +++  + P  A FPY  R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    A
Sbjct: 426 HGALAEKSLKNLFP--ADFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAA 483

Query: 461 GIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           G+A+GL+ D  +    + +L+DI G ED+ G MDFKVAGT  G TA Q+D+K GG++   
Sbjct: 484 GVAIGLISDEAEPETKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQ 543

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  +LQ A+ G  H+L +MS +    R Q     P ++ M I P +   +    G   + 
Sbjct: 544 LTESLQAARAGIDHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKL 603

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           I  +TG K++ +D+  + + +    +++ A +M   + DV E N
Sbjct: 604 IEAETGVKISAEDEAHISLLAQDKEKLQKAMDM---MNDVLESN 644


>gi|291234442|ref|XP_002737157.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 560

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 190/522 (36%), Positives = 301/522 (57%), Gaps = 49/522 (9%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           ++I+   +PLKL TG++AR +DG  +A  GET V+ T +   +      F PLTV+++++
Sbjct: 53  IDIQIGDKPLKLSTGKLARFADGCAIAQIGETSVMVTAISKTTPSASSSFLPLTVDFRQK 112

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  +LRRE  PT+ EIL SR+IDRSIRPLF + Y  ++Q+I N +  D  + P
Sbjct: 113 AAAAGRIPMNHLRRERGPTDFEILTSRVIDRSIRPLFPQGYVFDSQIICNCLAVDGINDP 172

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++S+ AASAAL LS +P+ GPV   ++  I+G++++NP RL+  +  L+L V+G+ + +
Sbjct: 173 DILSINAASAALSLSDIPWNGPVGAVRMGLIDGKFIVNPTRLELIKSKLNLIVTGSKKSS 232

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-----KDFSK 239
           ++M+E  A  + +     AI  G  E   +I  I  L K   K+  V+++     +D  K
Sbjct: 233 IVMLEGSAENILQPEFCKAIKLGIKETNQIINGIESLCKTHGKKKRVVENMLTIPEDILK 292

Query: 240 LEEEMSQ-MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV---SVF 295
               +++  I E    S +   K+ R   I +++ + +   +   + + E E+      F
Sbjct: 293 AATNIAKDKIYEVF--SDYSHHKFSRDNAISNIRTECIDRLT---AMFPENEVFLFNEAF 347

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             +   V R ++LD+  R DGR    +RDIS +V + +  HGS+LF RG TQ +  VT  
Sbjct: 348 NFLVKDVFRNIILDEDRRCDGRSLTALRDISCEVDMYKPLHGSALFQRGQTQVLCTVTFD 407

Query: 356 TREDEQYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           + +     D+L    SG +  +F++HY F P AT EV RM A SRRE+GHG LA +A+ P
Sbjct: 408 SIDSALKGDALSEIISGIKEKNFLLHYEFPPFATNEVGRMFA-SRRELGHGALAEKALKP 466

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+  +FP+T+R+ SE+ ES+                  GVPI+  VAG+A+GLV   +
Sbjct: 467 VIPK--KFPFTIRLTSEVLESN------------------GVPITAAVAGVAIGLVAKTE 506

Query: 472 --------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
                   D+ +++DI G ED++G MDFK+AGT  GITA+Q+
Sbjct: 507 DDNRSNITDYRLMTDILGIEDYMGDMDFKMAGTKKGITALQV 548


>gi|316971903|gb|EFV55625.1| polyribonucleotide nucleotidyltransferase [Trichinella spiralis]
          Length = 1172

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 235/739 (31%), Positives = 387/739 (52%), Gaps = 64/739 (8%)

Query: 1    MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPL 59
             F++ +V+ +    P+ LETG++AR +DG+ +A  G T V+ATVV   RS      F PL
Sbjct: 400  FFNMVSVQADVGSVPMILETGQLARLADGSAVAKMGATAVMATVVAKSRSAVQPMMFMPL 459

Query: 60   TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK-CYKNETQVIINVM 118
            TV+Y+ R  AVG+IP  +LRRE   +++EIL +RMIDRS+RP F + CY  + QV  +++
Sbjct: 460  TVDYRSRAAAVGRIPTNFLRREIGASDSEILTARMIDRSLRPAFGRDCYV-DCQVSCSLL 518

Query: 119  QHDLESS-PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDL 176
              + +++   V+++ AASAAL  S + + GPV  A+V +++ + VLNP R   +  +L+L
Sbjct: 519  SLEADATGADVLAVNAASAALACSNVVWNGPVACARVCWVDSRPVLNPSRQQLEMSTLNL 578

Query: 177  FVS-GTQDAVLMVELEANQLSE---DVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
             +S G    ++MVE           D +        +  +  ++AI +LA    K   V 
Sbjct: 579  VLSVGEHRRIVMVEAGGGSSGSCSLDQLYACCDLAVDSAQRTLDAIKQLAARAGKPKRVP 638

Query: 233  DSKDFSK----------------------LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
              +                          L++++ +M   D RV+    E     +Q D 
Sbjct: 639  SGQLLPADKPDDLTGAIQLYASATLGELLLDKDLDKM-AFDERVANLRHETADNLRQADC 697

Query: 271  LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
             +   + +F               F D+  K +R  + +   R DGR  + +R I   V 
Sbjct: 698  FQDDQLRFFDV------------AFNDLLKKALRDQVFNTGHRRDGRTLDELRPIDCSVD 745

Query: 331  LLQRTHGSSLFIRGDTQAIVVVTLGTREDE------QYVDSLSGTQRNDFMMHYNFLPCA 384
            L    HGS+LF RG TQ +  +T  +R+          ++S   T+   FM HYNF   A
Sbjct: 746  LYPSLHGSALFQRGQTQVMCSLTFDSRQAAFRGDVFSLLNSGGITKEKKFMFHYNFASFA 805

Query: 385  TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
            T E+S      RRE+GHG LA +A+ PV+P  + FP+T+R+ +++ ES+GSSSMA+VC  
Sbjct: 806  TNELSSARGIGRRELGHGALAEKALRPVVP--SDFPFTIRLAADVLESNGSSSMASVCAG 863

Query: 445  SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503
            SLALMDAGVP    V+G+A+GL+    D+ +L+DI+G ED  G MDFK+A T +G +TA+
Sbjct: 864  SLALMDAGVPTKSSVSGVAIGLMSK-QDYRLLTDIAGIEDFFGDMDFKIAFTSNGEVTAI 922

Query: 504  QMDMK-IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
            Q+D K +GGI + I   A ++  +   ++  +M+  L++ R  +    P  E + +P  +
Sbjct: 923  QLDTKLLGGIDQRIFRQACERGLQANRNVQRKMAACLAKPRAAVKPNGPVEEQLPVPASK 982

Query: 563  IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT------DV 616
               ++G GG  ++ I  +TG +++  DD    + + +   ++ AR+ +  +       + 
Sbjct: 983  RSRLLGAGGLNLKRIEARTGVQISQLDDTVYSVFAPNKQAMQQARQSLDQLLADNVEEEQ 1042

Query: 617  PEVNKIYKGQVVKVMDFGAFVHFCGARDG-LVHISQLSTERVAKTSDV-VKEGDTVWVKL 674
             E   IY+ ++V++ D G  V    +     V  SQL + R+A  + +  + G T+ VK 
Sbjct: 1043 LEFGAIYETKIVELKDAGLMVQLHPSLAPVFVPNSQLDSRRIAHPATLGFQVGQTLLVKY 1102

Query: 675  LDFDD-RGKIKLSMKVVDQ 692
               D   G+++LS KV+ Q
Sbjct: 1103 FGRDPVTGQMRLSRKVLQQ 1121


>gi|12001940|gb|AAG43113.1|AF058952_1 polynucleotide phosphorylase A [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 425

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/423 (39%), Positives = 255/423 (60%), Gaps = 11/423 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  IE+AGR L +ETG IA Q +GAV+  YG+T VL      + +  G DFFPL VNY+E
Sbjct: 5   TFSIEFAGRTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGK-MATG-DFFPLQVNYEE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S
Sbjct: 63  KMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENAS 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDA 184
             V +M  +S AL +S +PF+GP+ G +V YI+G+Y++NP + E +  SL+L V+G  +A
Sbjct: 123 GRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLELSVAGNINA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEE 243
           + MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++     + L+ E
Sbjct: 183 INMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLKAE 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-----SVFEDI 298
           +      DL+ +  + EK  R      +K+ ++S +S+++ +     I+      + E +
Sbjct: 243 VIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILEGM 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLGT 356
           +   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL  
Sbjct: 303 EHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAP 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 363 MNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 422

Query: 417 AQF 419
            +F
Sbjct: 423 EEF 425



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 19/249 (7%)

Query: 323 RDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R ++ + G +      ++ +R GDT  +   T+G      +       Q N     Y   
Sbjct: 13  RTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGKMATGDFFP----LQVNYEEKMYAAG 68

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS--MA 439
               G   R   PS       RL  R I P+  +   F   +++++ +   D ++S  +A
Sbjct: 69  KFPGGFNKREARPSTDATLTARLIDRPIRPMFAEG--FRNEVQVINTVLSYDENASGRVA 126

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            + GSSLAL  + +P   P+AG+ +  + DG  +II   ++  E     ++  VAG  + 
Sbjct: 127 AMFGSSLALAISDIPFDGPIAGVEVAYI-DG-KYIINPTVA--EKEASSLELSVAGNINA 182

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           I  ++   K   +SE +M+ AL        + + E+ +  +E   ++G+    VE++ + 
Sbjct: 183 INMVESGAK--ELSEEVMLGALLAGH----NAVKELIEFQNEIVAKVGKEKAEVELLHVD 236

Query: 560 PDQIRNVIG 568
            D    VI 
Sbjct: 237 EDLKAEVIA 245


>gi|224537711|ref|ZP_03678250.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520634|gb|EEF89739.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 467

 Score =  310 bits (794), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 178/467 (38%), Positives = 278/467 (59%), Gaps = 12/467 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T+E+   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL V Y
Sbjct: 6   VKTIELP-DGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +   D  
Sbjct: 65  KEKFSASGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYSADGI 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  D+ ++  +DL V  T 
Sbjct: 125 DIPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMVGATY 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           + ++MVE E +++SE  +L+A+   H   K    A  +LA+       V         +E
Sbjct: 185 ENIMMVEGEMSEVSELDLLNAMKAAHEAIKVQCLAQKELAEAVGS--TVKREYCHEVNDE 242

Query: 243 EMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E+ + + E      +         K+ R    D ++++  + FS E  +     I   + 
Sbjct: 243 ELRKAVHEACYAKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELAEKAALIDRYYH 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++ + +R  +LD+  R+DGR ++ +R I +++  L   HGS++F RG+TQ++  VTLGT
Sbjct: 303 DVEKEAMRRSILDEGKRLDGRKTDEIRPIWSEINCLPGPHGSAIFTRGETQSLSTVTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DE+ +D++    +  F++HYNF P +TGE        RRE+GHG LA RA+   +P  
Sbjct: 363 KLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRALKGQIP-- 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I +PV+GIA
Sbjct: 421 ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIA 467


>gi|308800758|ref|XP_003075160.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
           tauri]
 gi|116061714|emb|CAL52432.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
           tauri]
          Length = 620

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 203/598 (33%), Positives = 326/598 (54%), Gaps = 27/598 (4%)

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDE--D 170
           M  D    P V+++  ASAALM S +P+ GPV   +V  I       + V++P  DE  +
Sbjct: 1   MASDGGEDPAVLAVNGASAALMASSIPWNGPVAAVRVAIIRDGSGEREIVVSPS-DEVVE 59

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAK-MCA 226
                LF +G     LM+E ++N+   L E ++ DA+   H   + ++ A  +LAK M  
Sbjct: 60  SSDFTLFYAGNDSRTLMIEAQSNKSGGLEESMLADALRVAHRAVRELLPAQIELAKEMGK 119

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
            +  ++ +   S+++E +   +K  L       I +K+ R +++ +L+ ++V+     + 
Sbjct: 120 PKQELVPAAVTSEMKEAVYAAMKTRLLALYEEHIQDKHERGRKMAELQSEVVAELIEANP 179

Query: 285 SWNEG--EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            W E    + S +    ++V+R  + D   R+DGR    +R +    GL+   HGS+LF 
Sbjct: 180 EWAESVDALGSAYFQTCSRVMRERIFDTDTRVDGRGLYDLRALDGVAGLMPIVHGSALFE 239

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+  +TLG+ +D Q +D+L+G      ++HY+F   +  E    G  SRRE+GHG
Sbjct: 240 RGNTQALATITLGSLDDSQKLDNLTGPTSKRLILHYSFPSFSVNETGARGI-SRREVGHG 298

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +++  V P    FP+ +R+ +E  ES+GSSSMA VC  S+ALMDAGVPI + V  I
Sbjct: 299 ALAEKSLLGVFPDEESFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPIKEHVGAI 358

Query: 463 AMGLVKDGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           ++GL+ D D+       + ++ DI G ED LG MDFK+AGT +G+T +Q+D K  GI   
Sbjct: 359 SIGLIMDEDETTREVKRYKLMDDIMGLEDVLGDMDFKIAGTRTGVTGIQLDCKPMGIPLE 418

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I++ AL +A   R  +++ M + +   +  + +  PR    +IP   I  +IG  G  I+
Sbjct: 419 ILIEALDRASAARQKVIDVMERAVKTPKTDVKDSAPRFGRASIPGSLIGKLIGPQGSNIK 478

Query: 576 GIVEQTGAKVNI-DDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDF 633
            + + TG+KV + +DDG + I   + A  +AA   I S+ + + EV K Y   V  VM F
Sbjct: 479 ALEKDTGSKVAVLNDDGDLAIFGPNKASYDAALAHIESMKNSIIEVGKTYVTTVKDVMPF 538

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           GA +      DGL+H+S+++ ER    +DV   GD V VK +  +   GKIK S K +
Sbjct: 539 GAVLITSNGDDGLLHVSEIAHERTENVADVFSVGDVVEVKCVAREGPSGKIKWSRKAL 596


>gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays]
 gi|219886165|gb|ACL53457.1| unknown [Zea mays]
          Length = 733

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/517 (35%), Positives = 300/517 (58%), Gaps = 20/517 (3%)

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLE 241
           M++++A ++SE  +   +   H+E    I+    LAK   K+       +I    + K+ 
Sbjct: 1   MIDVQAREISERDLQAGMKLAHSEAIKCIDPQISLAKRAGKKKKEYKISLISDTSYEKIR 60

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I+E    S +   K+ R   ++ + + + +    E+   +   +    + ++ +
Sbjct: 61  TFSEAPIEEVFTDSSY--GKFERGGALEKITQSVKAKLEEENDEDSLKFLHKAVDTVRKQ 118

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V+R  ++++ +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG   D Q
Sbjct: 119 VIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQ 178

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G     FM+HY+F P +  EV++ G  +RRE+GHG LA +A+  VLP  + FPY
Sbjct: 179 RLDSIVGPPTKRFMLHYSFPPFSIDEVAKRGGLNRREVGHGTLAEKALLAVLPPESDFPY 238

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474
           T+R+ +E+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV   D       ++ 
Sbjct: 239 TVRVNAEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPATGDISNYR 298

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R  IL+ 
Sbjct: 299 ILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARNQILDR 358

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +S +R      +PR+  ++   + +R ++    K    I ++TGA+V+I  DGTV 
Sbjct: 359 MDQEISTARGINDGSSPRLATLSFSNESLRKLLFHRKK----IEQETGARVSI-SDGTVT 413

Query: 595 IASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I + +   ++ A E +  +     EV + YKG V  + ++GAFV F G + GL+HIS+LS
Sbjct: 414 IVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHISELS 473

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            + V K SDVV  G ++ ++ +  D RG IKLS+K  
Sbjct: 474 HQPVTKVSDVVTLGQSLSLRCIGQDMRGNIKLSLKAT 510


>gi|268575784|ref|XP_002642872.1| Hypothetical protein CBG15142 [Caenorhabditis briggsae]
          Length = 721

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 219/713 (30%), Positives = 371/713 (52%), Gaps = 58/713 (8%)

Query: 6   TVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +V +++ G+  L+L+TG +AR +  AV+A+ G+  V+ATVV  +  +   +  PL V Y+
Sbjct: 27  SVSVDFNGKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQVEYR 86

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNETQVIINVMQHDLE 123
               AVG+IP  +LRRE   ++NEILISR IDRSIRPL  +  Y  ETQVI   +  D  
Sbjct: 87  PSASAVGRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPANSY--ETQVICKPLALDEN 144

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSG 180
           +   ++ + AAS+AL +S  PF GP+   +V  D     + +NP  +E    S+++ V+ 
Sbjct: 145 ADQIMLGINAASSALHISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNMIVAM 204

Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            ++   +M+EL+  +   + + +A+       + +  A+ +L  +          KD  +
Sbjct: 205 RRNQKTVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELGGI---------EKD--E 253

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDI 298
           L E+ + M  E L +             ++ L ++ + Y  ++    +   +I   +  +
Sbjct: 254 LPEKTTTM--EILEI-------------LEALARERIYYVMTDTLQPFPPADIYQCWSFL 298

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             KV+R   L   +R DGR     R I  QV + ++ HG S+F RG TQ +  VT  +  
Sbjct: 299 VKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPT 358

Query: 359 DEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
              + DS++   G+QR   FM+HY F   AT ++    + +RREIGHG LA +A+ P+ P
Sbjct: 359 AAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGASRSLNRREIGHGALAEKALKPLFP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--- 471
               FPY +R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ D     
Sbjct: 419 --TGFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDEKEPE 476

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ +L+DI G ED+ G MDFK+AGT +G TA Q+D+K  G++   +  +L  A+ G  H
Sbjct: 477 TNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAARAGIDH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +L +M+ +    R Q     P +E M I P +   +    G   + I  +TG K++++D+
Sbjct: 537 VLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVKISVEDE 596

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEV-----NKIYKGQVVKVMDFGAFVHFCGARDG 645
             + + + S  +++ A  M+  + +           I + ++V+  +F     +C     
Sbjct: 597 SNISLLAPSQEKLQKALSMMNGVLESNTTLDFAFGSIIQAEIVENNEFPDNGPWCVRHTT 656

Query: 646 LVHISQLSTERVAKTSDV-------VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
               +    ++ +K+S +       +K GD +       D+  G I+LS K +
Sbjct: 657 RKLPTSPYQQQPSKSSSIRHPDVLGLKVGDKMACTWFGRDEHTGNIRLSRKTL 709


>gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 726

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/400 (41%), Positives = 250/400 (62%), Gaps = 13/400 (3%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +V+R  ++ + +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG  
Sbjct: 98  VRKQVIRKRIIKEGLRVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAP 157

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DS+ G     FM+HY+F P +  EV++ G  +RRE+GHG LA +A+  VLP   
Sbjct: 158 GDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPEG 217

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------ 471
            FPYT+R+ SE+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV + D      
Sbjct: 218 DFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEADPTTGDI 277

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R  
Sbjct: 278 SSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIVCESLEPARKARNQ 337

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+ M + +S +R      +PR+  ++   + +R ++    K    I + TGA+V++  D
Sbjct: 338 ILDRMDQEISTARAINDGSSPRLATLSFSSNSLRKLLFHRKK----IEQDTGARVSV-SD 392

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           GTV I + +   ++ A E +  +     EV K YKG V  + ++GAFV F G + GL+HI
Sbjct: 393 GTVTIVAKTQPIMDKAIEKVEFLVGREIEVGKTYKGIVSSIKEYGAFVDFNGGQQGLLHI 452

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           S+LS E V+K SD++  G  + +  +  D RG IKLS+K 
Sbjct: 453 SELSHEPVSKVSDIISVGQALSLTCIGQDVRGNIKLSLKA 492


>gi|308801345|ref|XP_003077986.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
 gi|116056437|emb|CAL52726.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
          Length = 615

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/508 (36%), Positives = 278/508 (54%), Gaps = 59/508 (11%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           ++E+E     ++LETGR+  Q++GAV+A+ G+TV+ AT    R L     F PLTVNY E
Sbjct: 72  SIELEIGASRVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVPLTVNYSE 131

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +R+   +E E L +R++DR IRP+  K +  +TQV+  +M  D E S
Sbjct: 132 RFSAAGRTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGERS 191

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDE-DQGSLDLFVSGTQ 182
              +++ AASAAL +S +P + PVVG +V  + G  + ++NP  ++  +  LDL ++GT 
Sbjct: 192 TDALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKESRLDLVLAGTD 251

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA----KEPIVIDSKDFS 238
           +AVLM+E   + L+ D +L AI  GH       + I   A+  A     E +++  +   
Sbjct: 252 EAVLMIEGFCDFLTTDEMLRAIAKGHEAVSKACKEIDAWAQTVAPPKMNEKLIVPPEG-- 309

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV---------------------- 276
            ++E +  ++  +L  +  IP K VR   I   +++ V                      
Sbjct: 310 -VDEAVEALVGAELAEAIVIPIKQVRGATIGAARERAVEALKDQYEVRLRRLAPSRELDC 368

Query: 277 ------SYFSSEHSSWNEGEIVSVFEDIQA-------------------KVVRTVMLDKK 311
                 + FS E      G   S ++++ A                   + +R  +  K 
Sbjct: 369 ALPIRRNRFSREFVGC--GSTASAYKNVNALNGRPAHLAVINACGKVESRALRDTIRTKG 426

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR +  VR I+ + GLL RTHGS+LF RG+TQAI V TLG  +D Q VD +  T+ 
Sbjct: 427 RRQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTED 486

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             FM+HY F P + GE  R+G  SRRE+GHG LA RA+ P++P   +FP+  R+ S ITE
Sbjct: 487 KRFMLHYFFPPSSVGETGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMESTITE 546

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPV 459
           S+GSSSMATVC  +LAL+DAGVP+ + V
Sbjct: 547 SNGSSSMATVCAGTLALLDAGVPLKRYV 574



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATV 441
           A G   R GA S RE    RL  R I P++P+   + Y  +++  +   DG  S+    +
Sbjct: 140 AGGFRKRDGAVSERETLKARLVDRPIRPMIPKG--WGYDTQVLQWLMSFDGERSTDALAI 197

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
             +S AL  + +P+ KPV G+ +GL+   D+ I+  + S ++     +D  +AGTD  +
Sbjct: 198 TAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIV--NPSQEQMKESRLDLVLAGTDEAV 254


>gi|153876840|ref|ZP_02003956.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
 gi|152066696|gb|EDN66044.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
          Length = 255

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 152/253 (60%), Positives = 189/253 (74%)

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           MA+VCGSSLALMDAGV I  PVAGIAMGL+K+ D F++LSDI GDEDHLG MDFKVAGT 
Sbjct: 1   MASVCGSSLALMDAGVQIKAPVAGIAMGLIKEDDQFVVLSDIMGDEDHLGDMDFKVAGTT 60

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            G+TA+QMD+KI GI+  IM  AL QAK GRLHIL+ M + L+E R ++ ++ PR+    
Sbjct: 61  DGVTALQMDIKIEGITSEIMETALAQAKEGRLHILSLMCQALAEPRQEMSKYAPRIITFH 120

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P++IR VIG GG  IR I E+TG  VNI+++G V IAS  L   E AR  I +IT   
Sbjct: 121 IKPEKIREVIGKGGTTIRAIQEETGTTVNINEEGIVTIASVDLVAGEEARRQIETITSDI 180

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K+Y+G+VVK+MDFGAFV     +DGLVHISQ+S ERV K SD +KEG+TV VK+L+ 
Sbjct: 181 EVGKVYEGKVVKLMDFGAFVTILPGKDGLVHISQISQERVEKVSDKLKEGETVKVKVLEI 240

Query: 678 DDRGKIKLSMKVV 690
           D +G+I+LSMK V
Sbjct: 241 DKQGRIRLSMKAV 253


>gi|309358906|emb|CAP33602.2| hypothetical protein CBG_15142 [Caenorhabditis briggsae AF16]
          Length = 802

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 203/627 (32%), Positives = 341/627 (54%), Gaps = 24/627 (3%)

Query: 6   TVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +V +++ G+  L+L+TG +AR +  AV+A+ G+  V+ATVV  +  +   +  PL V Y+
Sbjct: 27  SVSVDFNGKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQVEYR 86

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF-SKCYKNETQVIINVMQHDLE 123
               AVG+IP  +LRRE   ++NEILISR IDRSIRPL  +  Y  ETQVI   +  D  
Sbjct: 87  PSASAVGRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPANSY--ETQVICKPLALDEN 144

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQV--DYINGQYVLNPRLDE-DQGSLDLFVSG 180
           +   ++ + AAS+AL +S  PF GP+   +V  D     + +NP  +E    S+++ V+ 
Sbjct: 145 ADQIMLGINAASSALHISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNMIVAM 204

Query: 181 TQD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            ++   +M+EL+  +   + + +A+       + +  A+ +L  +   E  + +     +
Sbjct: 205 RRNQKTVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELGGIEKDE--LPEKTTTME 262

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDI 298
           + E +  + +E +         + +  + +++K  M     +E    +   +I   +  +
Sbjct: 263 ILEILEALARERI-YYVMTDSTHDKISRDEEIKAIMEDVIGTEALQPFPPADIYQCWSFL 321

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             KV+R   L   +R DGR     R I  QV + ++ HG S+F RG TQ +  VT  +  
Sbjct: 322 VKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPT 381

Query: 359 DEQYVDSLS---GTQRN-DFMMHYNFLPCATGE--VSRMGAPSRREIGHGRLARRAIHPV 412
              + DS++   G+QR   FM+HY F   AT +  VS   + +RREIGHG LA +A+ P+
Sbjct: 382 AAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGVSASRSLNRREIGHGALAEKALKPL 441

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
            P    FPY +R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ D   
Sbjct: 442 FP--TGFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDEKE 499

Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
              ++ +L+DI G ED+ G MDFK+AGT +G TA Q+D+K  G++   +  +L  A+ G 
Sbjct: 500 PETNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAARAGI 559

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
            H+L +M+ +    R Q     P +E M I P +   +    G   + I  +TG K++++
Sbjct: 560 DHVLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVKISVE 619

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITD 615
           D+  + + + S  +++ A  M+  + +
Sbjct: 620 DESNISLLAPSQEKLQKALSMMNGVLE 646


>gi|241582682|ref|XP_002403552.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
 gi|215502222|gb|EEC11716.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
          Length = 723

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 227/718 (31%), Positives = 357/718 (49%), Gaps = 58/718 (8%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           LKL +GR+A+ +DG+ +A  G+T V+ TVV     K     F   +         G+   
Sbjct: 1   LKLASGRLAKFADGSAVAQIGDTSVMVTVV--SKTKPASATFLPLLLRLLIMRLFGQ--- 55

Query: 76  GYLRRESRPTENEILIS---------RMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
                ES P E++  +           +++RS+RPLF   Y  ETQ++ N++  D  + P
Sbjct: 56  ----SESVPHESQSRLPGSSYAQHALDLLNRSLRPLFPAGYFYETQLMCNLLAVDGINDP 111

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA- 184
            +VS+ AASAAL +S +P+ GPV   +V  I+G  V+NP R    Q SL+L V+G + + 
Sbjct: 112 DIVSLNAASAALSVSDVPWGGPVGAVRVGLIDGDVVINPTRRQMAQSSLNLIVTGAEHSQ 171

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           V+M+E   + +       A+  G  E + ++  I +  K+C +    ++       E   
Sbjct: 172 VVMLEASGDNVLLQDFQKAVRLGVKETQAIVRQIKEFQKLCGRPKRTVEKYFVPTPEMVD 231

Query: 245 SQMIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           S  +  + RV   + +    K  R   + +LK+ ++              +   F ++  
Sbjct: 232 SARLLAETRVRDILSDVGHDKISRDNALTELKQDILEKLQESFPGVESFLLNEAFTEVLK 291

Query: 301 KVVRTVMLDKKVRMD--------GRDSETVRDIS--AQVGLLQRTHGSSLFIRGDTQAIV 350
            V R  +L  +  +          R  E   D +       L     +  + +G   AI 
Sbjct: 292 AVFREQVLQNEKSIGVAYVHVLFWRLFEPCYDPNDCGDGWFLTLAAINIQYSKGKDGAIR 351

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++ L T     +V    G +  +FM+HY F P AT E  R G   RRE+GHG LA   + 
Sbjct: 352 ILNLMT----PFVLHFRGIKERNFMLHYEFPPYATNETGRSGPTGRRELGHGALAEHGLR 407

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P++P+   FP+T+R+ SE+ ES+GSSSMA+VCG S+ALMDAGVPI  P AG+A+GLV   
Sbjct: 408 PLVPR--DFPFTIRLTSEVLESNGSSSMASVCGGSMALMDAGVPIQAPAAGVAVGLVSLP 465

Query: 471 D--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           D        D+ +L+D+ G ED+LG MDFK+AGT  GITA+Q D+K+ GI   +++ A+Q
Sbjct: 466 DPDQPHQLKDYRLLTDLLGIEDYLGDMDFKMAGTKKGITALQADIKLPGIPVKVVMEAIQ 525

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA  G+  IL  M++V+S+ R Q  +  P  E + +PP Q    +G+GG  IR +  +TG
Sbjct: 526 QATEGKSEILRIMNEVISKPRAQKKDNWPVSEKLEVPPHQRARFVGLGGYNIRKLTAETG 585

Query: 583 AK-VNIDDDGTVKIASSSLAEIEA-----AREMIRSITDVP-EVNKIYKGQVVKVMDFGA 635
                I      K  + + A+        A  +IR I     E   +Y  ++V++ + G 
Sbjct: 586 VNFFFIYSSIKYKCRNYTPADYSKIKNTNAFTLIRMIQKPNLEFGAVYTAKIVEIRESGV 645

Query: 636 FVH-FCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            V  +      L+H SQL   +V   S +  +EG  + VK    D   GK++LS KV+
Sbjct: 646 MVKLYPTMVPTLLHNSQLDQRKVNHPSALGFEEGQDITVKYFGRDPVSGKMRLSRKVL 703


>gi|295103372|emb|CBL00916.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Faecalibacterium prausnitzii SL3/3]
          Length = 441

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 171/443 (38%), Positives = 245/443 (55%), Gaps = 37/443 (8%)

Query: 2   FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           FD   V E   AGRP K+E G++   S+ + L  YGET V+  VV     ++G DFFPL 
Sbjct: 12  FDNFKVYETMLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLN 71

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  
Sbjct: 72  VEYEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSL 131

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP +  M+ AS    +S +P+ GP+ G QV  +NG+ VLNP  ++ + S L L V+
Sbjct: 132 DPDCSPEIAGMIGASLVTAVSDIPWNGPIGGVQVGLVNGEIVLNPTQEQRKVSDLALTVA 191

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T D ++M+E  AN++ ED +L AI   H E K +IE I+K+     K  I     DF  
Sbjct: 192 ATMDKIVMIEAGANEVDEDTMLTAIKTAHVEIKKIIEFINKIVAERGKPKI-----DF-- 244

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---------------VSYFSSEHS 284
                 Q++  D+ V   I  KY     +DD K  M               +   + E+ 
Sbjct: 245 ------QVVGLDMDVFHAIQNKY-----LDDFKAAMDTDDKNVRDAALLPIMDKIAEEYP 293

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             +  ++  V   +Q  VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG
Sbjct: 294 DLSAADLDLVSYKMQKFVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRG 353

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
            TQ +   TLG  +D Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG L
Sbjct: 354 QTQVLTTCTLGGTKDNQLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGAL 413

Query: 405 ARRAIHPVLPQTAQFP--YTLRI 425
           A RA+ PVLP   +FP  + LR+
Sbjct: 414 AERALVPVLPSLEEFPLHHPLRV 436



 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R G P  R I   R+  R + P+ P+  +    + +     + D S  +A + G+SL   
Sbjct: 91  REGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCSPEIAGMIGASLVTA 150

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
            + +P + P+ G+ +GLV +G+   I+ + + ++  +  +   VA T   I  + ++   
Sbjct: 151 VSDIPWNGPIGGVQVGLV-NGE---IVLNPTQEQRKVSDLALTVAATMDKI--VMIEAGA 204

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
             + E+ M+ A++ A      I+  ++K+++E
Sbjct: 205 NEVDEDTMLTAIKTAHVEIKKIIEFINKIVAE 236


>gi|148691867|gb|EDL23814.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Mus
           musculus]
          Length = 551

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/494 (35%), Positives = 289/494 (58%), Gaps = 28/494 (5%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 51  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 109

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 110 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 169

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +  
Sbjct: 170 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 229

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSKLE 241
           ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P     K F+   
Sbjct: 230 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTPSA 285

Query: 242 E--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E  + +++I  +   + F     +K  R + ++ ++     +   +    ++ EI+  F 
Sbjct: 286 EIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFN 345

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 346 IVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 405

Query: 357 RE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV
Sbjct: 406 LESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPV 465

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   + 
Sbjct: 466 IPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNP 523

Query: 472 ------DFIILSDI 479
                 D+ +L+DI
Sbjct: 524 EKGEIEDYRLLTDI 537


>gi|312090436|ref|XP_003146614.1| 3' exoribonuclease [Loa loa]
 gi|307758222|gb|EFO17456.1| 3' exoribonuclease [Loa loa]
          Length = 634

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 218/680 (32%), Positives = 343/680 (50%), Gaps = 72/680 (10%)

Query: 40  VLATVV-YDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRS 98
           VLATVV    S  D  DF PLTV++Q+   AVG+IP  YLRRE +  + +IL SRMIDRS
Sbjct: 4   VLATVVGRHSSTSDTADFMPLTVDFQQSASAVGRIPTNYLRRELQRNDADILASRMIDRS 63

Query: 99  IRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158
           IRPLF K Y  ETQ+I   +  D +  P ++ + AASAAL LS +P+EGP+   ++  IN
Sbjct: 64  IRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAASAALTLSDIPWEGPLGAVRIALIN 123

Query: 159 GQYVLNP-RLDEDQGSLDLFVSGTQDA--VLMVELEANQLSEDVVLDAIIFGHNECKPVI 215
            + V+NP R +    SLDL ++   D   +LM++++  +   +     I  G      +I
Sbjct: 124 NEIVVNPSRKNMKISSLDLVIAACDDGNRILMIDMDGCETGIEKFAACIETGLQAISYLI 183

Query: 216 EAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQI 268
           +AI+K+   C ++        ID  D   L EEM  +  + L   ++    +K  R + +
Sbjct: 184 QAINKVRDSCGRQKRQNICGEIDI-DMIALMEEMQILYGDQLYHILTDIEHDKLSRDRAV 242

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328
             L   M+       +     ++   F ++  K +R  +   + R DGR  + +R +  +
Sbjct: 243 SALGNHMLESLKERSTPH---KLRHTFTNLLKKSLREALFKSERRCDGRKFDELRPVDIK 299

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           + + ++ HGS+LF RG TQ    VT          D+ S            F P A  ++
Sbjct: 300 MDVHKKLHGSALFQRGQTQVFSTVTF---------DAPSAA----------FQPDALSQL 340

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
                                         FPY LR+  ++ ES+GSSSMA+VC   LAL
Sbjct: 341 ---------------------------LEDFPYCLRLACDVLESNGSSSMASVCAGCLAL 373

Query: 449 MDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           +DAGV +  P AG+AMGL+  K+ +D+ IL+DI+G ED  G MDFK+AGT  G TAMQ+D
Sbjct: 374 LDAGVQMKTPAAGVAMGLIIDKERNDYRILTDINGLEDFAGDMDFKIAGTVRGYTAMQLD 433

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +K+ GI   +M+ +L+QA+ G  H+L  M K     R       P  E + +   +   +
Sbjct: 434 LKVPGIKPEVMMESLEQARNGLEHLLQLMRKAQPFCRNHFKSTVPVHETIPVEIYKRHII 493

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR----EMIRSITDVPEV-NK 621
              GG   + I  +TGAK++++DD  + I + +  ++E A+    +M  S +++  V   
Sbjct: 494 FRSGGYNAKLIESETGAKISVEDDANISIFAPNKVKLEEAKMMLTKMFESESEIELVFGA 553

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD- 678
           +YKG++  V++ G  V    + +  L+  S L    VA    +  K G  + ++ L  D 
Sbjct: 554 MYKGEITDVLEHGVLVTLHKSMKPILLKNSNLDVRNVAHPKVLGFKVGQKIIIQYLGRDP 613

Query: 679 DRGKIKLSMKVVDQNTGKPI 698
           + G  ++S K + Q+   PI
Sbjct: 614 NTGYHRISRKTL-QSASLPI 632


>gi|224006464|ref|XP_002292192.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971834|gb|EED90167.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
           CCMP1335]
          Length = 659

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 220/688 (31%), Positives = 338/688 (49%), Gaps = 89/688 (12%)

Query: 58  PLTVNYQERTYAVGKIPGGYLRR--ESRP-TENEILISRMIDRSIRPLF-------SKCY 107
           PL V+Y+ER +A GKIP    RR   S P T+ E+L SR+IDR+IRP          K  
Sbjct: 1   PLQVDYRERYHAAGKIPVHNRRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAI 60

Query: 108 KNETQVIIN--VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI----NGQY 161
                +++N  V  +D             S A  ++G  F  P+  A    +    +G  
Sbjct: 61  SLPGNIVVNCEVQSYD-------------SRASSINGKKFPVPLKAAACVKLAIQRDGSV 107

Query: 162 VLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           V +P  +E +    +L  +GT+D VLM+E E   +SE  V +A++       P+IE   +
Sbjct: 108 VYDPSPNESEDAKFELLYAGTKDRVLMLEFEDPGVSETTVANALMLAQEAILPIIEQQEQ 167

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           L     ++    ++ D +  E      + + L ++ F     +     +D  K       
Sbjct: 168 L-----RQNYRYNASDSTGEELMTDGEVAQLLGLNSFEETTTLDEVHCEDGAKLF----- 217

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR-----------------------MDGR 317
                 + GE     ++I A +    +L K+VR                        DGR
Sbjct: 218 -----GDNGEESPTIQNIPAHIHDGTLLSKQVRGRREYIVKSEITRLLKCAMINLRADGR 272

Query: 318 DSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
            +  VR ISA   +     HGSS F RG+TQ I   ++G   D   V   S    +   +
Sbjct: 273 GTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDG--VPHASPYSDSSAFL 330

Query: 377 HYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           HY+F   +TG V   G  S  RR IGHG LA +A+ PVLP    FPY +R+  E+T S+G
Sbjct: 331 HYDFPDFSTGTVKSKGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNG 390

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           SSSMA  CGS+LAL+DAGVP+  PVAG+++GL  D    ++  DI+G EDH G MDFKV 
Sbjct: 391 SSSMAAACGSTLALLDAGVPLVSPVAGVSVGLTPDSKTLLL--DITGTEDHYGDMDFKVC 448

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS--ESRLQLGEFTPR 552
           GT  G+ +MQ+D+K   ++  ++  AL  AK GR  IL  M K +     R  +    PR
Sbjct: 449 GTSGGVLSMQLDVK-NPVTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPR 507

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
           +E++   P++ R++IG GG V+R + ++    +++  DG +     +L  +  A+ +I  
Sbjct: 508 IEVVKFDPNRKRDLIGPGGSVLRQLEDRFNVSLDLSQDGLI---FGALQAVSGAKRVIMD 564

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS--TERVAKTS-----DVVK 665
           +    E   +Y+G V+++ DFGA V     ++GL+H+S+L+  TE+  + +     D +K
Sbjct: 565 LVADVEEGGVYEGTVIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLK 624

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
            GD + V     D  +G IKLS K + Q
Sbjct: 625 VGDKIEVLCTKIDHVQGSIKLSRKKLLQ 652


>gi|12835817|dbj|BAB23374.1| unnamed protein product [Mus musculus]
          Length = 540

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/496 (35%), Positives = 288/496 (58%), Gaps = 28/496 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+
Sbjct: 45  RAVTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGIN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP R +    +L+L V+G  +
Sbjct: 164 EPDILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPK 223

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPIVIDSKDFSK 239
             ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P     K F+ 
Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTP----QKIFTP 279

Query: 240 LEE--EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
             E  + +++I  +   + F     +K  R + ++ ++     +   +    ++ EI+  
Sbjct: 280 SAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIES 339

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F  +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT 
Sbjct: 340 FNIVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTF 399

Query: 355 GTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            + E     +Q + +++G +  +FM+HY F   AT E  ++   +RRE+GHG LA +A+ 
Sbjct: 400 DSLESSIKSDQIITAINGVKDKNFMLHYEFPLYATNETGKVTGVNRRELGHGALAEKALC 459

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   
Sbjct: 460 PVIPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKT 517

Query: 471 D-------DFIILSDI 479
           +       D+ +L+DI
Sbjct: 518 NPEKGEIEDYRLLTDI 533


>gi|89888168|gb|ABD78634.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
 gi|89888171|gb|ABD78636.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
 gi|89888174|gb|ABD78638.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
          Length = 359

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/358 (42%), Positives = 232/358 (64%), Gaps = 7/358 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTASQLKTSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT++AVLMVE EA QLSE+++L  ++FGH + +  + AI  L +   K E     +    
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAVNAIHDLVRDAGKPEWNWAPAAKND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
            L   ++   +E L  +  I EK  R  ++ D+   + +  + + ++  +       + +
Sbjct: 241 ALIAAVTAAAQEGLTAAYQIREKQARTTKLRDVYADVSAKLAEQAAAAGQDAPDSVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV
Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVV 358



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQ-----TAQFPYTLRIVSEITESDGSSSMAT 440
           G   R G PS +E    RL  R + P+ P+          +TL +  EI        +  
Sbjct: 76  GFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEI-----DPDIPA 130

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + G+S AL  +G+P + P+    +G V DG   +   + +  +     MD  VAGT++ +
Sbjct: 131 MIGASAALAISGIPFNGPIGAARVGYV-DGQYVL---NPTASQLKTSKMDLVVAGTENAV 186

Query: 501 TAMQMDMKIGGISENIMV 518
             ++ + +   +SE IM+
Sbjct: 187 LMVESEAQ--QLSEEIML 202


>gi|306836337|ref|ZP_07469316.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
 gi|304567772|gb|EFM43358.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
          Length = 493

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 175/467 (37%), Positives = 263/467 (56%), Gaps = 36/467 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY--GETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           ++  R ++ ETG++ARQ+DG+V  TY   +T++LAT       ++  DFFPLTV+ +ER 
Sbjct: 28  DFGTRTVRFETGQLARQADGSV-TTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERM 86

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    
Sbjct: 87  YAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYYD 146

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSG 180
           VV++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G
Sbjct: 147 VVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAG 206

Query: 181 -------TQD-AVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISK 220
                   +D A++MVE  A     + + D        A+  G    KP I    EA + 
Sbjct: 207 RIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNG 266

Query: 221 LAKMCAKE----PIVIDSKD--FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           LA+  AKE    P+    +D  F+ +E+  S+ ++  L +             ++ +++ 
Sbjct: 267 LAERTAKETQEFPLFPAYEDDVFAAVEKAASKKLESLLTIPGKQERDEATNAHMEQVEQD 326

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           ++  F+    +    +I + + ++  K+VR  +L    R+DGR    +RD+S +V L+ R
Sbjct: 327 LLPQFADLEEAVASKQIRAAYNEVMKKIVRRKILTDGFRIDGRGLTDIRDLSVEVDLVPR 386

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+P
Sbjct: 387 AHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIESKRYMHHYNFPPFSTGETGRVGSP 446

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
            RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +V
Sbjct: 447 KRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSV 493


>gi|3970797|emb|CAA74099.1| polynucleotide phosphorylase [Staphylococcus aureus]
          Length = 277

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/273 (49%), Positives = 187/273 (68%)

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           A+ V TL    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  R
Sbjct: 1   ALSVCTLAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGER 60

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  ++P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV
Sbjct: 61  ALAQIIPSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLV 120

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            DG+++ IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ 
Sbjct: 121 SDGENYTILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKA 180

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+ IL E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++I
Sbjct: 181 RMEILEELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDI 240

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D DG V IASS    I+ A ++I  +T   EV 
Sbjct: 241 DQDGNVSIASSDAEMIKKAIKIIEELTKEVEVT 273


>gi|133918825|emb|CAL29617.1| polyribonucleotide nucleotidyltransferase [Rhizobium undicola]
          Length = 180

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 154/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+E      
Sbjct: 17  RPIVAEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKENFMLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+I P+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918827|emb|CAL29618.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918829|emb|CAL29619.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918831|emb|CAL29620.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 154/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I A+VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVAEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180


>gi|133918847|emb|CAL29628.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
 gi|133918849|emb|CAL29629.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
 gi|133918851|emb|CAL29630.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
          Length = 180

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS++F RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEGDRFAVLSDILGDEDHL 180


>gi|133919178|emb|CAL29637.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
 gi|133919180|emb|CAL29638.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
 gi|133919182|emb|CAL29639.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
          Length = 180

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 23/157 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+E      
Sbjct: 17  RPIVAEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKENFMLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+I P+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158
             SS  + ++   S ALM +G+P   PV G  +  I 
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162


>gi|133918823|emb|CAL29616.1| polyribonucleotide nucleotidyltransferase [Rhizobium gallicum]
          Length = 180

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLATVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180


>gi|133918839|emb|CAL29624.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133918841|emb|CAL29625.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133918843|emb|CAL29626.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133919172|emb|CAL29634.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
 gi|133919174|emb|CAL29635.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris
           LMG 14919]
 gi|133919176|emb|CAL29636.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
          Length = 180

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I A+VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180


>gi|133918833|emb|CAL29621.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
 gi|133918835|emb|CAL29622.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
 gi|133918837|emb|CAL29623.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
          Length = 180

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGILPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180


>gi|133918853|emb|CAL29631.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
 gi|133918855|emb|CAL29632.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
          Length = 180

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180


>gi|133918807|emb|CAL29608.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           xinjiangense]
 gi|133918809|emb|CAL29609.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           xinjiangense]
 gi|133918811|emb|CAL29610.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918813|emb|CAL29611.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918815|emb|CAL29612.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918817|emb|CAL29613.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
          Length = 180

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVLSDILGDEDHL 180



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER---TY 68
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER    Y
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSP 126
                  G   R   P   EI   ++  R+IRP+  +   +    +V+  + + +  SS 
Sbjct: 73  NFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS- 131

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158
            + ++   S ALM +G+P   PV G  +  I 
Sbjct: 132 -MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162


>gi|46202937|ref|ZP_00052357.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 218

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 163/193 (84%)

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           MG+P RREIGHG+LA RAI PVLP   +FPYT+R+VSEITES+GSSSMA+VCG SL+LMD
Sbjct: 1   MGSPGRREIGHGKLAWRAIRPVLPAAHEFPYTIRVVSEITESNGSSSMASVCGGSLSLMD 60

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           AGVP+ +PVAGIAMGL+ +G+ F +LSDI GDEDHLG MDFKVAGT+ GIT++QMD+KI 
Sbjct: 61  AGVPLRRPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIA 120

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+E IM +AL QAK GR HIL EM++ L+ +R +LGE+ PR+E M IP D+IR+VIG G
Sbjct: 121 GITEEIMKVALAQAKDGRAHILGEMAQDLTAARPELGEYAPRIETMQIPTDKIRDVIGTG 180

Query: 571 GKVIRGIVEQTGA 583
           GK+IR IVE+TGA
Sbjct: 181 GKIIREIVEKTGA 193



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 11/126 (8%)

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES--SPHVVSMVAASAALMLS 141
           P   EI   ++  R+IRP+    +  E    I V+    ES  S  + S+   S +LM +
Sbjct: 4   PGRREIGHGKLAWRAIRPVLPAAH--EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDA 61

Query: 142 GLPFEGPVVGAQVDYI-NGQY--VLNPRL-DEDQ-GSLDLFVSGTQDAV--LMVELEANQ 194
           G+P   PV G  +  I  G+   VL+  L DED  G +D  V+GT++ +  L ++++   
Sbjct: 62  GVPLRRPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIAG 121

Query: 195 LSEDVV 200
           ++E+++
Sbjct: 122 ITEEIM 127


>gi|133918845|emb|CAL29627.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           americanum]
          Length = 180

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS++F RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180


>gi|133919170|emb|CAL29633.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
          Length = 180

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+ D F +LSDI GD+DHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDKDHL 180


>gi|133918805|emb|CAL29607.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 23/157 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+  +   +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158
             SS  + ++   S ALM +G+P   PV G  +  I 
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162


>gi|133918803|emb|CAL29606.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918819|emb|CAL29614.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER---TY 68
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER    Y
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSP 126
                  G   R   P   EI   ++  R+IRP+  +   +    +V+  + + +  SS 
Sbjct: 73  NFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS- 131

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158
            + ++   S ALM +G+P   PV G  +  I 
Sbjct: 132 -MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162


>gi|62531249|gb|AAH92603.1| Pnpt1 protein [Rattus norvegicus]
          Length = 452

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 245/420 (58%), Gaps = 21/420 (5%)

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI+  F  +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +
Sbjct: 3   EIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVL 62

Query: 350 VVVTLGTRED----EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
             VT  + E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA
Sbjct: 63  CTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALA 122

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            +A+ PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+G
Sbjct: 123 EKALCPVIPK--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVG 180

Query: 466 LVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           LV   +       D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++
Sbjct: 181 LVTKSNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIM 240

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            A+QQA   +  IL  MSK +S+ R    E  P VE + +P  +    IG GG  ++ + 
Sbjct: 241 EAIQQATVAKREILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQ 300

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDF 633
            +TG  ++  D+ T  I + +   +  AR+ I  I         E   +Y   + ++ D 
Sbjct: 301 AETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDT 360

Query: 634 GAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
           G  V  +      L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 361 GVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 420


>gi|133918787|emb|CAL29598.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum]
          Length = 180

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|195341759|ref|XP_002037473.1| GM12088 [Drosophila sechellia]
 gi|194131589|gb|EDW53632.1| GM12088 [Drosophila sechellia]
          Length = 485

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 168/452 (37%), Positives = 251/452 (55%), Gaps = 23/452 (5%)

Query: 260 EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319
           +K  R   +++++  ++    S         I   F      + R ++ ++ +R DGRD 
Sbjct: 16  DKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLIAEQFNQTSRTIFRELIFERGLRCDGRDY 75

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-----GTQRNDF 374
           + +R+IS QV + +  HGS+LF RG TQ    V+L ++E    +DSL+     G +  +F
Sbjct: 76  DQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNF 135

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           M+HY F P ATGEV R+G   RRE+GHG LA R++ P LP    +P+T+R+ SE+ ES+G
Sbjct: 136 MLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLLPTLPN--DYPFTVRLTSEVLESNG 193

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDFIILSDISGDEDHL 486
           SSSMA+VCG SLALMDAGVP+S P AG+A+GLV        K   D+ IL+DI G ED++
Sbjct: 194 SSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYM 253

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A   +  IL+ MS+ + E R   
Sbjct: 254 GDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSKILDIMSEAIREPRKYR 313

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            E  P  E + + P Q   +IG  G  ++ I  +TG  +   D+      + S A ++ A
Sbjct: 314 KECWPVSETVTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNAFAPSQAAMDEA 373

Query: 607 REMIRSIT---DVP--EVNKIYKGQVVKVMDFGAFV-HFCGARDGLVHISQLSTERVAKT 660
           +E+I        VP  E   IY  ++ ++ D G  V  +      L+H SQL   ++A  
Sbjct: 374 KELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPALLHNSQLDQRKIAHP 433

Query: 661 SDVVKE-GDTVWVKLLDFDD-RGKIKLSMKVV 690
           S +  E G  + VK    D   G ++LS KV+
Sbjct: 434 SALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL 465


>gi|119620491|gb|EAX00086.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Homo
           sapiens]
          Length = 500

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 270/459 (58%), Gaps = 15/459 (3%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V ++   R L++ +G++AR +DG+ +   G+T V+ T V  ++      F PL V+Y+
Sbjct: 45  RAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAV-SKTKPSPSQFMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGT-Q 182
            P V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP R +    +L+L V+G  +
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPK 223

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEP--IVIDSKDF 237
             ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P  +   S + 
Sbjct: 224 SQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEI 283

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            K   +++ M +     + +  +K  R + ++ ++         +    +  EI+  F  
Sbjct: 284 VKYTHKLA-MERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNV 342

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + 
Sbjct: 343 VAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSL 402

Query: 358 E----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           E     +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+
Sbjct: 403 ESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVI 462

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+G
Sbjct: 463 PR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSG 499


>gi|133918821|emb|CAL29615.1| polyribonucleotide nucleotidyltransferase [Rhizobium huautlense]
          Length = 180

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           R +  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RAIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918797|emb|CAL29603.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918799|emb|CAL29604.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918801|emb|CAL29605.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER---TY 68
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER    Y
Sbjct: 17  RPIVSEVGVLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFMLHY 72

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSP 126
                  G   R   P   EI   ++  R+IRP+  +   +    +V+  + + +  SS 
Sbjct: 73  NFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS- 131

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158
            + ++   S ALM +G+P   PV G  +  I 
Sbjct: 132 -MATVCGTSLALMDAGVPLAKPVAGIAMGLIK 162


>gi|133918791|emb|CAL29600.1| polyribonucleotide nucleotidyltransferase [Rhizobium galegae]
          Length = 180

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RPIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133919184|emb|CAL29640.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis]
          Length = 180

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180


>gi|308461535|ref|XP_003093059.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
 gi|308251715|gb|EFO95667.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
          Length = 712

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 188/657 (28%), Positives = 342/657 (52%), Gaps = 54/657 (8%)

Query: 5   HTVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            +V +++ G+  L+L++G IAR +  AV+A+ G+  V+ATVV  +  +   +  PL V Y
Sbjct: 26  QSVSVDFDGKNALELKSGHIARFASSAVVASSGDNAVMATVVQKKEKQGDGNGVPLQVEY 85

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           ++    + K                             LF + +    QVI   +  D  
Sbjct: 86  RKNFKKISK-----------------------------LFFRNFFFHFQVICKPLALDEN 116

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE-DQGSLDLFVSGT 181
           +   ++ + AAS AL +S  PF GP+   +V     G + +NP  +E  + SLD+ ++  
Sbjct: 117 ADQIMLGINAASTALHISSAPFSGPLAALRVTMSPRGTFQINPTQEELREASLDVIIAMK 176

Query: 182 QD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           ++   +M+EL+  ++S + +  A        + +  A+ K+A    K+  V+ +++  K+
Sbjct: 177 KNQKTVMIELDGKEVSAEHLEQACHVAFENVEKLHVAMEKMAVGVEKD--VLPTRNLGKI 234

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           E  + +++ E +   ++    +K  R ++I  + + +V   S E  S    +I   +  +
Sbjct: 235 ENILRELVTERVYYVMTDSTHDKISRDQEIQKIYRDVVE--SKELQSHGSQDIYPCYSAL 292

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +++R  +L+  +R DGR     R I+ QV + ++ HG S+F RG TQ +  VT  +  
Sbjct: 293 VKQILRETVLNTGIRCDGRKITDFRPITIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPA 352

Query: 359 DEQYVDSLS---GTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
              + DS++   G+QR   FM+HY F   A  EV    + +RREIGHG LA +A+  + P
Sbjct: 353 AAFHPDSVAQLLGSQRKKSFMLHYEFPSFAINEVGISRSSNRREIGHGALAEKALKNLFP 412

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-- 472
           +   FPY  R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ D ++  
Sbjct: 413 K--DFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKSAAAGVAIGLITDQNEPD 470

Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +L+DI G ED+ G MDFK+AGT +G TA Q+D+K  G++   +  +LQ A+ G  H
Sbjct: 471 SKYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLKESLQAARSGIDH 530

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +L++M+ +    R +     P ++ + I P +   +    G   + I  +TG K++ +D+
Sbjct: 531 VLSKMNIMRDRPREEFKTTVPIIQSIRIEPHKRVTLFRNNGYNCKLIEAETGVKISAEDE 590

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVP-----EVNKIYKGQVVKVMDFGAFVHFCGA 642
             + + + +  +++ A +M+  + +           I + ++V+++D G FV   G+
Sbjct: 591 NNISLLAQNKQKLQKAMDMMGEVLETHGNLDFAFGSIVQAEIVEIVDRGVFVTLPGS 647


>gi|148927324|ref|ZP_01810889.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
           genomosp. GTL1]
 gi|147887280|gb|EDK72739.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
           genomosp. GTL1]
          Length = 264

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/258 (53%), Positives = 184/258 (71%), Gaps = 1/258 (0%)

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDISGDEDHLGHMD 490
           S+GS+SMA+VC   L++MDAGVPI  PV+GIAMGL  DG+   IILSDI G ED  G MD
Sbjct: 3   SNGSTSMASVCSGILSMMDAGVPIKAPVSGIAMGLATDGNGKAIILSDIQGIEDFAGDMD 62

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKV GT  GITA+QMD+K+ GIS ++M  ALQQAK GR  IL  M   L E R +L  + 
Sbjct: 63  FKVVGTTRGITALQMDIKVKGISPDLMAKALQQAKTGRAKILEHMLSTLPEPRPELSPYA 122

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+E + + P++I  +IG GG+ I  I  +TGA+++I DDG V I++     I+ A E +
Sbjct: 123 PRIEKLMVNPEKIGAIIGKGGETINKITAETGAEIDIKDDGLVTISAVEHEAIQKALEWV 182

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +S+ + PEV K+Y+G+VVK+M+FGAFV+     DG+VHISQLS +RV K +DVVKEGD V
Sbjct: 183 KSLVEEPEVGKVYEGKVVKIMEFGAFVNIMPGIDGMVHISQLSDQRVEKVTDVVKEGDIV 242

Query: 671 WVKLLDFDDRGKIKLSMK 688
            VKL+  DDRG++ LS+K
Sbjct: 243 RVKLVAIDDRGRLNLSIK 260


>gi|133918789|emb|CAL29599.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici]
          Length = 180

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 150/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRD  TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTSSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918793|emb|CAL29601.1| polyribonucleotide nucleotidyltransferase [Rhizobium giardinii]
          Length = 180

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RPIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133919186|emb|CAL29641.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
           mediterraneum]
          Length = 180

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/180 (70%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT EDEQYVDSL
Sbjct: 1   ILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTADQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVLSDILGDEDHL 180


>gi|133918785|emb|CAL29597.1| polyribonucleotide nucleotidyltransferase [Agrobacterium rubi]
          Length = 180

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLSTVRPIVSEVGMLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RPIVSEVGMLPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPSVEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918783|emb|CAL29596.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           tumefaciens]
          Length = 180

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   VLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKDGQDFFPLTVNYQER----- 66
           RP+  E G + R + G+ L T GET  +V+AT+    + +D Q    LT  Y+ER     
Sbjct: 17  RPIVSEVGILPR-THGSALFTRGETQAIVVATL---GTGEDEQYVDSLTGMYKERFLLHY 72

Query: 67  ---TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHD 121
               Y+VG+       R   P   EI   ++  R+IRP+      +    +V+  + + +
Sbjct: 73  NFPPYSVGET-----GRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEITESN 127

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
             SS  + ++   S ALM +G+P   PV G  +  I
Sbjct: 128 GSSS--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918795|emb|CAL29602.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           rhizogenes]
          Length = 180

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180


>gi|217032224|ref|ZP_03437722.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
 gi|216946095|gb|EEC24706.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
          Length = 382

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 159/391 (40%), Positives = 228/391 (58%), Gaps = 19/391 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q  +S
Sbjct: 1   MIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHES 60

Query: 366 LSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           L      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q    +
Sbjct: 61  LEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ---VI 117

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDISG E
Sbjct: 118 RLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDISGLE 177

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M +   +  
Sbjct: 178 DAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEAKEKIV 237

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASSSLAE 602
           +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++   G VKI  +    
Sbjct: 238 INFSHL-PTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKEHV 296

Query: 603 IEAAREMIRSITDVPE------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++    ++  +  + +      ++++ + QV +++DFGAF+      +GL     L  + 
Sbjct: 297 LKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----LRKQN 351

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           + +   V+KEGD++  +++ F ++GKI L +
Sbjct: 352 MDRCQVVLKEGDSIRCRVISF-NKGKIALDL 381


>gi|114765824|ref|ZP_01444917.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541823|gb|EAU44860.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 250

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 172/243 (70%), Gaps = 7/243 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    ++W    L LE+G++ARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNITKKSMQWGEETLTLESGKVARQADGTVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V + +G YVLNP +D+ QG        
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGFEDGDYVLNPTVDDMQGLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEDCAKEPFDFQ 240

Query: 234 SKD 236
             D
Sbjct: 241 PPD 243


>gi|1628372|emb|CAA67158.1| polynucleotide phosphorylase [Dichelobacter nodosus]
          Length = 251

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/239 (55%), Positives = 172/239 (71%)

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
           SSMA+VCGSSLALMDAGVP+  PVAGIAMGL+K+GD+F IL+DI GDEDHLG MDFKVAG
Sbjct: 1   SSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDILGDEDHLGDMDFKVAG 60

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
           + +G+TA+QMD+KI GI+E IM  AL QA  GRLHIL  M++ ++ +  +L ++ PR   
Sbjct: 61  SATGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAIAGTARELSDYAPRFSS 120

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           M I  ++I++VIG GG  IR I EQTG  + I+DDG+VKIA++  A    AR +I  I  
Sbjct: 121 MRIDTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATDKAAAANARRLIEEIVA 180

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            PE+ +IY  +V K+ DFGAF+ F   ++GLVHISQ++  RV    D + EG  V VKL
Sbjct: 181 EPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDELTEGQEVKVKL 239


>gi|213024185|ref|ZP_03338632.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 204

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/204 (59%), Positives = 158/204 (77%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 1   EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 60

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 61  DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 120

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 121 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 180

Query: 479 ISGDEDHLGHMDFKVAGTDSGITA 502
           I GDEDHLG MDFKVAG+  GI+A
Sbjct: 181 ILGDEDHLGDMDFKVAGSRDGISA 204



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 26/188 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---------VYDRSLKDGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T          V D  + +  D F    N+ 
Sbjct: 25  RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFP 83

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDL 122
              Y+VG+   G +     P   EI   R+  R +  +      +    +V+  + + + 
Sbjct: 84  P--YSVGET--GMV---GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 136

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL-DEDQ-GSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L DED  G +D  
Sbjct: 137 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 194

Query: 178 VSGTQDAV 185
           V+G++D +
Sbjct: 195 VAGSRDGI 202


>gi|133919190|emb|CAL29643.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium
           japonicum]
          Length = 180

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/180 (66%), Positives = 147/180 (81%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRDS+TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT EDEQY+D+L
Sbjct: 1   ILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           SGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   +FPYT R+V
Sbjct: 61  SGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +   F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLSDILGDEDHL 180


>gi|133919188|emb|CAL29642.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium elkanii]
          Length = 180

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 147/179 (82%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRD++TVR+I A+ G+L R HGS+LF RG+TQA+VV TLGT EDEQY+D+L
Sbjct: 1   ILDTGKRIDGRDAKTVRNIIAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDAL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           SGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   +FPYT+R+V
Sbjct: 61  SGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           SEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G  F +LSDI GDEDH
Sbjct: 121 SEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGQRFAVLSDILGDEDH 179


>gi|213852747|ref|ZP_03382279.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 325

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/312 (43%), Positives = 194/312 (62%), Gaps = 10/312 (3%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 18  EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L 
Sbjct: 198 MVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVN----DALN 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  
Sbjct: 254 ARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKN 313

Query: 302 VVRTVMLDKKVR 313
           VVR+ +L  + R
Sbjct: 314 VVRSRVLAGEPR 325



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 97/204 (47%), Gaps = 21/204 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++ +  D  A+ V  +G ++ +   D    T      ++Y     A
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT------VNYQERTYA 79

Query: 385 TGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS  E    RL  R + P+ P+   F   +++++ +   +   +  
Sbjct: 80  AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEG--FVNEVQVIATVVSVNPQVNPD 137

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G +   D +++  + + DE     +D  VAGT+
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NPTQDELKESKLDLVVAGTE 193

Query: 498 SGITAMQMDMKIGGISENIMVMAL 521
           + +  ++ + ++  +SE+ M+ A+
Sbjct: 194 AAVLMVESEAEL--LSEDTMLGAV 215


>gi|254696417|ref|ZP_05158245.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 185

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/173 (69%), Positives = 145/173 (83%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR+HIL EM+K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+N
Sbjct: 2   GRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKIN 61

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+DDGTVKIASS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGL
Sbjct: 62  IEDDGTVKIASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 121

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VHISQL+ +RVAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 122 VHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 174


>gi|254479099|ref|ZP_05092451.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
 gi|214034948|gb|EEB75670.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
          Length = 328

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/316 (38%), Positives = 202/316 (63%), Gaps = 5/316 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV Y+
Sbjct: 4   RTFEMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y++GKIPGG+++RE +P+E  IL +R+IDR IRPLF + Y+N+ QVI  V+  D ++
Sbjct: 64  ERLYSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDA 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++G++V+NP  ++ + SL  L VSGT+D
Sbjct: 124 QPEIVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSGTKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLE 241
           A++MVE  A ++ E+ +LDAI++ H   K ++E I  + K     K  +V+   D  +LE
Sbjct: 184 AIVMVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEID-KELE 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++     E +  +   PEK  R   +D ++++++ +F  E+   N  +I  V   I  +
Sbjct: 243 EKVRAYATEKIYNALRTPEKKERNDNLDKVEQEVLEHFKDEYPD-NLADIDEVLYKIMKE 301

Query: 302 VVRTVMLDKKVRMDGR 317
            +R ++ ++K+R+DGR
Sbjct: 302 QMRKMIKEEKIRVDGR 317



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 323 RDISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R +  Q G + Q+ +G++    GDT  ++V    ++E  + +D    T   +  + Y+  
Sbjct: 13  RKLVVQTGKVAQQANGAAWVKYGDT-VVLVTACASKEPREGIDFFPLTVEYEERL-YSIG 70

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI--TESDGSSSMA 439
               G + R G PS + I   RL  R I P+ P+   +   +++++ +   + D    + 
Sbjct: 71  KIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEG--YRNDVQVIATVLSVDPDAQPEIV 128

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            + GSS+AL  + +P + P   +A+GLV DG  F+I       E  L H+   V+GT   
Sbjct: 129 AMIGSSVALSISDIPFNGPTGSVAVGLV-DG-KFVINPTYEQREKSLMHL--VVSGTKDA 184

Query: 500 ITAMQMDMK 508
           I  ++   K
Sbjct: 185 IVMVEAGAK 193


>gi|47218201|emb|CAF97065.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 556

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 251/437 (57%), Gaps = 15/437 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L++ +GR+AR +DG+ +   GET V+ T V  ++      F PL V+Y+++  A G+I
Sbjct: 1   RKLEISSGRLARFADGSAVVQLGETSVMVTAV-SKTKPSPSQFMPLVVDYRQKAAAAGRI 59

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  YLRRE   T+NEIL SR+IDRS+RPLF   Y  +TQV+ N++  D  + P V+++ A
Sbjct: 60  PTNYLRRELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINA 119

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQDA-VLMVELE 191
           ASAAL LS +P+ GP+   +V  ++G+ ++NP R +    +L+L VSG   + V+M+E  
Sbjct: 120 ASAALALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTLNLVVSGGPSSQVVMIEAS 179

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLA---KMCAKEPIVIDSKDFSKLEEEMSQMI 248
           A  + +     A+  G    + +I AI +LA   K+  + P+ + S   + + E + Q+ 
Sbjct: 180 AENVLQQDFCHAVKVGIKHTQQIIHAIQQLAREQKVTKRTPVKVFSAP-ADVVEYVRQVA 238

Query: 249 KEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
            E +    + +  +K  R + I+ ++ +               E++  F  +   + R +
Sbjct: 239 SESIYAVFTDYTHDKISRDEAINKVRLETEETIKDRFPQAEPFEVIESFNTVCKDIFRNL 298

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD-- 364
           +L++  R DGR+   +R+IS +V L +  HGS+LF RG TQ +  VT  + E     D  
Sbjct: 299 VLNEYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADII 358

Query: 365 --SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             +LSG +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+  V+P+  +FP+T
Sbjct: 359 TTALSGIKDKNFMLHYEFPPYATNETGKVAGLNRRELGHGALAEKALRSVIPK--EFPFT 416

Query: 423 LRIVSEITESDGSSSMA 439
           +R+ +E+ ES+G  +++
Sbjct: 417 IRVTAEVLESNGEYAVS 433


>gi|332141239|ref|YP_004426977.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551261|gb|AEA97979.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 344

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 193/305 (63%), Gaps = 2/305 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG IARQ+  AVLA+  +T VL TVV  +  K  QDFFPLTVNYQE
Sbjct: 5   TKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE QV++ VM  + +  
Sbjct: 65  KAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIP 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
             ++SM+  SAAL +SG+PF GP+  A+V + NG+Y+LN R +E  +  LDL V+GT+ A
Sbjct: 125 TDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVVAGTEGA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEE 243
           VLMVE EA+ LSE+ +L A++FGH + + V+ A+++ A     E        + + L+++
Sbjct: 185 VLMVESEADVLSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTALKDK 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +  + + ++  +  I +K  R   +  + +K +    +E    ++ E++ +  D+++ VV
Sbjct: 245 VKALAEAEMTAAYQISDKLERKDGVTAVTEKALEAILAEDEEQDKKEVLDLLHDLESDVV 304

Query: 304 RTVML 308
           R+ +L
Sbjct: 305 RSRIL 309



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 109/241 (45%), Gaps = 21/241 (8%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++    D  +++V  +G +E +   D    T      ++Y     A
Sbjct: 15  VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLT------VNYQEKAYA 68

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES--DGSSS 437
            G++      R G PS  E    RL  R I P+ P+   F   +++V  +  +  D  + 
Sbjct: 69  AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPE--GFKNEVQVVVTVMSANPDIPTD 126

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           + ++ G+S AL  +G+P + P+    +G      ++I+  +   +E     +D  VAGT+
Sbjct: 127 IISMIGTSAALAISGIPFNGPIGAARVGF--SNGEYIL--NTRAEEQAESELDLVVAGTE 182

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
             +  ++ +  +  +SE  M+ A+         +++ +++  +E   +  ++ P  E  A
Sbjct: 183 GAVLMVESEADV--LSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTA 240

Query: 558 I 558
           +
Sbjct: 241 L 241


>gi|224372889|ref|YP_002607261.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
           AmH]
 gi|223588442|gb|ACM92178.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
           AmH]
          Length = 451

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 234/443 (52%), Gaps = 39/443 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE+    R  K    ++A+Q++ +V    G TV+LAT+ Y+      +DF PL V Y E+
Sbjct: 5   VELNINNRKQKFVLNKVAKQANSSVWFEDGNTVMLATLTYNPDEMVEEDFVPLVVQYVEK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIP G+++RE +P + E L +R++DRS+RPLF K Y   T + +  +  D +S  
Sbjct: 65  AYAVGKIPAGFVKREQKPGDFETLTARIVDRSLRPLFPKEYGYNTVLTVMALSADEDSDL 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
              +M AA+A + LS LPF   V G +   I G+ ++NP L + ++G  +LFV+GT+D +
Sbjct: 125 QTAAMNAAAACMYLSDLPFAKMVYGVRATRIKGELIINPTLSQLEEGDFNLFVTGTKDEL 184

Query: 186 LMVELEANQLSE-------DVVLDAII-------FGHNECK---------PVIEAISKLA 222
           LM+E  +    E       D++LD +        +  NE K          V EAI K A
Sbjct: 185 LMIEFASQGQEEIEIIPVDDIMLDGVPVENTIVKYRINEIKEDELVEILEKVQEAIKKGA 244

Query: 223 -------KMCAKEPIVIDSK---DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
                  K   K+PI  + +   D ++  E +      +LR       K  R   +    
Sbjct: 245 SAYEEALKDFKKDPIDFEERKEADITEYIELIRSKYSNELREIIKHLSKSERDYLLKQFA 304

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
           +K+ +    E    N   I+   + ++ ++VR ++L++ +R DGR  + +R IS +  LL
Sbjct: 305 RKIAAALDKEEEFEN---ILKAVKQVKREIVRGMILNEGIRADGRKLDEIRPISIETNLL 361

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN--DFMMHYNFLPCATGEVSR 390
            R HGS LF RG TQA+ V T G   D Q   +L+  +     FM+HYNF   + GE  R
Sbjct: 362 PRAHGSCLFTRGQTQALAVATRGGDMDAQVYGNLTDKEEKLEKFMLHYNFPAFSVGEAER 421

Query: 391 MGAPSRREIGHGRLARRAIHPVL 413
           +G PSRRE+GHG LA+RAI P+L
Sbjct: 422 LGPPSRRELGHGNLAKRAIEPLL 444


>gi|260760789|ref|ZP_05873132.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260671221|gb|EEX58042.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 176

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 138/165 (83%)

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK
Sbjct: 1   MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 60

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IASS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ 
Sbjct: 61  IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 120

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +RVAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 121 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 165


>gi|213417036|ref|ZP_03350180.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 247

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 163/226 (72%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGLVK+GD++++LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL 
Sbjct: 1   AMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALN 60

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QAK  RLHIL  M + ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG
Sbjct: 61  QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETG 120

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             + I+DDGTVKIA++   + + A   I  IT   EV +IY  +V +++DFGAFV   G 
Sbjct: 121 TTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGG 180

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 181 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 226


>gi|167536393|ref|XP_001749868.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771583|gb|EDQ85247.1| predicted protein [Monosiga brevicollis MX1]
          Length = 629

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 283/556 (50%), Gaps = 38/556 (6%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL--TVNYQERTYAVGK 72
           P     G +A Q+DGAV  T  +   L +              PL   V+Y+ER  AV  
Sbjct: 50  PATFTCGALAYQADGAV--TLDQACPLHST-------PSPFLTPLLQQVDYRERGTAVNL 100

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  + RRE    + E L++R++DRS+RPL        TQ+ + ++       P V S+ 
Sbjct: 101 IPKSFHRREGGERDRETLVARLVDRSLRPLVPSDVAASTQMTVKLLASQARMEPTVQSIE 160

Query: 133 AASAALMLSGLPFEGPVVGAQV----------DYINGQYVLNPRLDEDQGSLD-LFVSGT 181
           AASAALM+S + + GPV   +V          D    + ++NP   E    +  L  SG 
Sbjct: 161 AASAALMVSDISWHGPVAAVRVGVRKALEVASDDEPYELLINPDHKETAECVGVLLYSGV 220

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSK 239
           Q   +M++ E  +L    +  A+   H   +P +EA  +L +     K+P++ +      
Sbjct: 221 QAGAVMIDFEGAELPLPALKRALRAAHQHIQPSLEAQRELGERAGRTKKPLLREPLALGI 280

Query: 240 LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   ++Q ++  L V    +  K  R ++++ +  ++ +    +        +    E++
Sbjct: 281 MAAAITQGLESVLEVLRMHMLSKRDRIERLNSITDQLEADLLQQFPMAGLRLVDDALEEV 340

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + +R ++L +  R+DGRD + V+ + A + L    HG+SLF RG+TQ     TLG R+
Sbjct: 341 LKEALRQLVLSEDTRIDGRDFDEVQAVQAAINLYPELHGNSLFQRGETQVFCTATLGDRD 400

Query: 359 DEQYVD----SLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
             + +D    +++G + +  F   Y F   A  ++       RRE GHG LA RA+  ++
Sbjct: 401 AVKRLDEIEVAVAGLSPQKSFFFDYEFPAYAINKIRVRRGQMRRETGHGSLAERALGRMI 460

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
                +  T+R+ S++T S GSSSMA+VCG SLA+MDAGVP+  PVAG++ GLV   D+ 
Sbjct: 461 --DPGYENTVRVTSQVTSSFGSSSMASVCGGSLAMMDAGVPLRAPVAGLSCGLVGYTDEE 518

Query: 473 -----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
                + +L+D+ G ED  G MD K+A T SG+ A+Q D ++ GIS +++  A+Q+   G
Sbjct: 519 GQLTKYQLLTDLKGFEDIYGAMDLKMASTQSGVNAIQFDTELRGISLDVLEEAMQRTFDG 578

Query: 528 RLHILNEMSKVLSESR 543
           +  +L EM+  +  +R
Sbjct: 579 KQVVLKEMNAAMPATR 594


>gi|169642585|gb|AAI60927.1| Pnpt1 protein [Rattus norvegicus]
          Length = 383

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 202/348 (58%), Gaps = 17/348 (4%)

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P+  
Sbjct: 6   KSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPK-- 63

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------ 471
            FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV   +      
Sbjct: 64  DFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEI 123

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   +  
Sbjct: 124 EDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKRE 183

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  MSK +S+ R    E  P VE + +P  +    IG GG  ++ +  +TG  ++  D+
Sbjct: 184 ILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDE 243

Query: 591 GTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARD 644
            T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V  +     
Sbjct: 244 ETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 303

Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
            L+H SQL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 304 VLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 351


>gi|330982939|gb|EGH81042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 275

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 118/279 (42%), Positives = 179/279 (64%), Gaps = 11/279 (3%)

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
           M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q S LD+ V+GT +AVLMV
Sbjct: 1   MIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMV 60

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEE 243
           E EA +L+ED +L A++F H+E + VI AI +LA   AK     +P    ++  S +  E
Sbjct: 61  ESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSE 120

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             + I +   ++     K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + V
Sbjct: 121 FGEAISQAYTITV----KADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTV 176

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +
Sbjct: 177 RENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLL 236

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           D+L G +++ FM+HYNF P + GE  RMG   RREIGHG
Sbjct: 237 DTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHG 275


>gi|219115974|ref|XP_002178782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409549|gb|EEC49480.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 956

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 219/378 (57%), Gaps = 28/378 (7%)

Query: 337 GSSLFIRGDTQAIVVVTLGTR----EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
           GS  F+R  TQ  +V  + +R    + E+  DS S  +     + Y+F P ATG V  +G
Sbjct: 572 GSLRFLR--TQESLVSDMNSRKVKADKERTGDSGSLAEVKRAFLQYDFPPYATGTVP-IG 628

Query: 393 --APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
             A +RR IGHG LA +A+ PVLP    FPY +RI SE+T+S+GSSSMA+VCG +LAL+D
Sbjct: 629 SQAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRISSEVTDSNGSSSMASVCGGTLALLD 688

Query: 451 AGVPISKPVAGIAMGLVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           AGVPI  PVAG+++GL +D D        +L DI+G ED+ G MDFK+AGT  GITA Q+
Sbjct: 689 AGVPIQMPVAGVSVGLARDVDAGEAGVHRLLLDITGTEDYYGGMDFKIAGTRKGITAFQL 748

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE---SRLQLGEFTPRVEIMAIPPDQ 562
           D+K   +   I+  ALQ A RGR  ILNEM    S+   +R    +  PRVE++   P +
Sbjct: 749 DVK-QLLPLEIVTEALQLACRGRNVILNEMQDQCSDGLKARPSPKDSAPRVEVVRFNPQR 807

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
            R+++G GG ++R + ++ G  +++  +G   +  +    ++ A+  +  +       ++
Sbjct: 808 KRDLVGPGGIILRQLEDRYGVALDLTQEGRCLLFGADQELVDQAKLTVMDLVADVVPGEV 867

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK---------TSDVVKEGDTVWVK 673
           Y+G ++++ DFGA V     ++GL+H+S+L+ E+ A              +KEG  V V 
Sbjct: 868 YEGTIIEIKDFGAIVELLRNKEGLLHVSELTNEQEAGDHPGGIAGFVRQYLKEGQKVEVL 927

Query: 674 LLDFDD-RGKIKLSMKVV 690
             D D  +G I+LS K +
Sbjct: 928 CTDVDPVQGSIRLSRKAI 945



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 8/98 (8%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVY------DRSLKDGQDFFPLTVNYQER 66
           G P++  TG++AR +  +V+   G TVVLATV +      +    +    F LTV+Y++R
Sbjct: 60  GPPIQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNNAASTF-LTVDYRQR 118

Query: 67  TYAVGKIPGGYLRRESRP-TENEILISRMIDRSIRPLF 103
            + VGKIP    RR++   +  E+L SR IDR++RPL 
Sbjct: 119 YHGVGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLI 156



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 258 IPEKYVRCK--QI--DDLKKKMVSYFSSEHSSWNEGEIVSVFED-----IQAKVVRTVML 308
           +P K VR +  QI   ++ + + SY ++   ++   E+  + E      +Q   V++  L
Sbjct: 422 LPSKTVRGRREQIVQTEIARLVESYVTAAGDAFEPRELQWLSEQTTKHLLQKGFVQSA-L 480

Query: 309 DKKVRMDGRD-----SETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQ 361
               R DGR       +T+R +  Q+  L  T HGS+LF RGDTQ +   TLG   D Q
Sbjct: 481 QGGARADGRGLPGHGWKTIRPLKVQMPALPDTVHGSALFARGDTQVLCTATLGPPGDGQ 539


>gi|226329677|ref|ZP_03805195.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
 gi|225202863|gb|EEG85217.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
          Length = 267

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 158/229 (68%), Gaps = 1/229 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+     T V  TVV  + +K GQDFFPLT
Sbjct: 1   MLNPTVRKFQYGQHTVSLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q++  V+  
Sbjct: 61  VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASA L LSG+PF GP+ GA+V +I+GQYVLNP +DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGGARVGFIDGQYVLNPTVDELKVSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           GT  AVLMVE EA+ LSE+ +L A++FGH++ + VIE I+ L     KE
Sbjct: 181 GTAGAVLMVESEADLLSEEEMLGAVVFGHDQQQVVIENINALVAEVGKE 229



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATVCGSSLA 447
           R G P   E    RL  R + P+ P+   F   ++IV+ +   +   +  +  + G+S  
Sbjct: 80  REGRPGEGETLIARLIDRPLRPLFPEG--FLNEIQIVATVVSVNPQVNPDIVAMIGASAV 137

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           L  +GVP + P+ G  +G + DG   +   + + DE  +  +D  VAGT   +  ++ + 
Sbjct: 138 LALSGVPFNGPIGGARVGFI-DGQYVL---NPTVDELKVSKLDLVVAGTAGAVLMVESEA 193

Query: 508 KIGGISENIMVMAL 521
            +  +SE  M+ A+
Sbjct: 194 DL--LSEEEMLGAV 205


>gi|289810801|ref|ZP_06541430.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 210

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 19  EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 78

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 79  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 138

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 139 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 198

Query: 187 MVELEANQLSED 198
           MVE EA  LSED
Sbjct: 199 MVESEAELLSED 210



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 89/192 (46%), Gaps = 19/192 (9%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++ +  D  A+ V  +G ++ +   D    T      ++Y     A
Sbjct: 27  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT------VNYQERTYA 80

Query: 385 TGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS  E    RL  R + P+ P+   F   +++++ +   +   +  
Sbjct: 81  AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEG--FVNEVQVIATVVSVNPQVNPD 138

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G +   D +++  + + DE     +D  VAGT+
Sbjct: 139 IVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NPTQDELKESKLDLVVAGTE 194

Query: 498 SGITAMQMDMKI 509
           + +  ++ + ++
Sbjct: 195 AAVLMVESEAEL 206


>gi|254490936|ref|ZP_05104118.1| S1 RNA binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224463845|gb|EEF80112.1| S1 RNA binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 208

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 147/208 (70%)

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT+ G+TA+QMD+KI GI+E IM  AL QA+ GR+HIL++M+ V+S  R ++ EF
Sbjct: 1   DFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRIHILDKMNAVISTHRTEMSEF 60

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            PR+  + I  D+IR+VIG GG  IR I E+TGA ++I DDGTV I SS     ++A   
Sbjct: 61  APRIITIKIHADKIRDVIGKGGATIRAITEETGATIDIQDDGTVMIFSSDYNAGQSALRR 120

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  IT   EV KIY+G+V K+MDFGAFV     +DGLVHISQ+S ERV   SD + EGD 
Sbjct: 121 VEDITAEVEVGKIYEGRVAKLMDFGAFVTILPGKDGLVHISQISDERVENVSDKLSEGDV 180

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           + VK+L+ D +G+I+LSMK V++ T + 
Sbjct: 181 IQVKVLEVDRQGRIRLSMKAVNEETSES 208


>gi|68171420|ref|ZP_00544811.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67999162|gb|EAM85821.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 242

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 114/231 (49%), Positives = 160/231 (69%), Gaps = 4/231 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ+ GAV+ +Y  T VLATVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRRSAEWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQ-GSLDLF 177
           D  + P V ++V A+AAL +SG+PF G VVGA+V Y+   G+Y+LN   DE    SLDLF
Sbjct: 120 DTVTPPEVTALVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +SG +D+VLMVE EA++LSE  +L AI FGH  C+ VI  I + +    K 
Sbjct: 180 LSGNEDSVLMVESEASELSESQMLGAITFGHQHCQEVINLIKEFSHEVVKH 230



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS--MATVCG 443
           G + R G PS RE    RL  R+I P+ P  A F   + IV  +   D  +   +  + G
Sbjct: 75  GFLKREGKPSDRETLISRLIDRSIRPLFP--AGFYDEISIVCNLLSYDTVTPPEVTALVG 132

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           ++ AL  +GVP +  V G  +G +     +++  + S DE     +D  ++G +  +
Sbjct: 133 ATAALSISGVPFNGLVVGARVGYLPSEGKYLL--NASADEMLCSSLDLFLSGNEDSV 187


>gi|289676029|ref|ZP_06496919.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 224

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 150/218 (68%), Gaps = 3/218 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQER 66
           + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+
Sbjct: 7   KFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEK 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P
Sbjct: 67  TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDP 126

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG-SLDLFVSGTQDA 184
            + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V+GT +A
Sbjct: 127 DIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEA 186

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           VLMVE EA +L+ED +L A++F H+E + VI AI +LA
Sbjct: 187 VLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELA 224



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV-- 388
           + ++  G+ L    D  +++V  +G ++ +      +G       +HY     A G++  
Sbjct: 22  IARQASGAVLVTVDDDVSVLVTVVGAKQAD------AGKGFFPLSVHYQEKTYAAGKIPG 75

Query: 389 ---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS--SSMATVCG 443
               R G PS +E    RL  R I P+ P+   F   +++V  +  +       +A + G
Sbjct: 76  GFFKREGRPSEKETLTSRLIDRPIRPLFPEG--FMNEVQVVCTVVSTSKKIDPDIAAMIG 133

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           +S AL  +G+P   PV G A     +   +++  + + ++     +D  VAGT   +  +
Sbjct: 134 TSAALAISGIPFDGPV-GAARVAFHESTGYLL--NPTYEQLQASSLDMVVAGTSEAVLMV 190

Query: 504 QMDMK 508
           + + K
Sbjct: 191 ESEAK 195


>gi|581223|emb|CAA25332.1| unnamed protein product [Escherichia coli]
          Length = 196

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/189 (54%), Positives = 133/189 (70%), Gaps = 1/189 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P 
Sbjct: 68  YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVL
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187

Query: 187 MVELEANQL 195
           MVE EA  L
Sbjct: 188 MVESEAQLL 196



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 95/210 (45%), Gaps = 22/210 (10%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ML+  VR       TV   + + G++ R   +++ +  D  A+ V  +G ++ +   D  
Sbjct: 1   MLNPIVRKFQYGQHTV---TLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFF 57

Query: 367 SGTQRNDFMMHYNFLPCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             T      ++Y     A G +      R G PS  E    RL  R I P+ P+   F  
Sbjct: 58  PLT------VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEG--FVN 109

Query: 422 TLRIVSEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            +++++ +   +   +  +  + G+S AL  +G+P + P+    +G +   D +++  + 
Sbjct: 110 EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NP 165

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           + DE     +D  VAGT++ +  ++ + ++
Sbjct: 166 TQDELKESKLDLVVAGTEAAVLMVESEAQL 195


>gi|218185968|gb|EEC68395.1| hypothetical protein OsI_36554 [Oryza sativa Indica Group]
          Length = 485

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 170/279 (60%), Gaps = 3/279 (1%)

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT  
Sbjct: 98  NPEIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTAG 157

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AVLMVE EA+ LSED +L A++FGH++ + VIE I+ L     K      +   ++ L  
Sbjct: 158 AVLMVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNEALHA 217

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            ++++ +  L  +  I EK  R  Q+D +K  +V    ++  + + GEI  +   ++  V
Sbjct: 218 RVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLAQDETLDAGEIQDILGTVEKNV 277

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q 
Sbjct: 278 VRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQN 337

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVS-RMGAPSRREIG 400
           +D L G + + F+ HYNF P + GE   R   P + E+ 
Sbjct: 338 LDELMGEKTDSFLFHYNFPPYSVGETGMREIDPKKAEVA 376


>gi|224537696|ref|ZP_03678235.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520699|gb|EEF89804.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 246

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 158/233 (67%), Gaps = 7/233 (3%)

Query: 465 GLVKDG--DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           GL+K+   D + +LSDI GDEDHLG MDFKV GT +GITA QMD+K+ G+S  I+  AL 
Sbjct: 1   GLIKNPGEDKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKVDGLSFEILERALN 60

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QAK GR+HIL ++ + + E R +L    PR+E M IP + I  VIG GGK+I+G+ E+TG
Sbjct: 61  QAKEGRMHILGKILETIQEPREELKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETG 120

Query: 583 AKVNI---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           A + I   D+ G ++I+ ++   I+ A  +I+ I  VPEV ++YKG+V  VM +GAFV F
Sbjct: 121 ATITIEEVDNIGRIEISGTNKKSIDDAMRLIKGIVAVPEVGEVYKGKVRSVMPYGAFVEF 180

Query: 640 CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
              +DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+
Sbjct: 181 LPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLLDIDPKTGKFKLSRKVL 233


>gi|306836335|ref|ZP_07469315.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
 gi|304567806|gb|EFM43391.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
          Length = 255

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/251 (46%), Positives = 160/251 (63%), Gaps = 8/251 (3%)

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           C S+L+L +AGVP+  PVAGIAMGLV    K  + F+ L+DI G ED  G MDFKVAGT 
Sbjct: 1   CASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAFGDMDFKVAGTS 60

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
             ITA+Q+D K+ GI   ++  AL+QA+  R  IL  M++V+ +S  ++    P++  + 
Sbjct: 61  EFITALQLDTKLDGIPSKVLAQALEQARDARATILETMAEVI-DSPDEMSGLAPKITSVK 119

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-- 615
           IP ++I  +IG  GK I  I E TGA V+I+DDGTV I++ +    +AA E + SI +  
Sbjct: 120 IPVNKIGELIGPKGKTINQITEDTGADVSIEDDGTVYISAVTGEAADAAIEKVNSIANPQ 179

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKL 674
           +P+V + + G VVK + FGAFV     RDGL+HIS L   ER+ K  DVV  GD V V++
Sbjct: 180 LPKVGERFLGTVVKTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVVNVGDKVQVEI 239

Query: 675 LDFDDRGKIKL 685
            D D+RGKI L
Sbjct: 240 ADIDNRGKISL 250


>gi|87311731|ref|ZP_01093846.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
 gi|87285515|gb|EAQ77434.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
          Length = 350

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 191/330 (57%), Gaps = 8/330 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG +A+Q+ GA L  YG+TVVL       S + G DFFPLT +Y+ERT A GK PG
Sbjct: 15  LSFETGYLAKQAAGACLTQYGDTVVLTAAATGPS-RPGTDFFPLTCDYRERTAAAGKFPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RPT  EIL  R++DR IRP+F K +++E QV+ NV+  D ++   V++M  A+
Sbjct: 74  GFIKREGRPTTKEILTCRLMDRPIRPMFPKGFRDEVQVMANVLSSDRQNDGDVLAMNGAA 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
            AL LS LPF+GP+   ++ +IN ++V+ P  +E ++  LDL +SG +++VLM+E  + +
Sbjct: 134 VALGLSSLPFDGPLAAVRLAHINDEFVVFPTHEELEESDLDLIISGNKESVLMIEGFSRE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIE-AISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253
           + ED++L AI   H   K + +  +  L K  AKE    ++   + + + +      D +
Sbjct: 194 MPEDIMLKAIETCHEYIKQICDMQLEFLEKAGAKES-NYEAAAPNPIYQTLVDRYYNDFK 252

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
            +     K  R + +  LK+++ +      +   +  +      + D+  ++VR ++L  
Sbjct: 253 SAKQTSGKQNRAEAVKALKERVKAEMIPDPNAEDAITDPVFKEAWHDLDERIVRDLIL-A 311

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
             R DGRD  T+R I  +V +L R HGS++
Sbjct: 312 GTRPDGRDGNTLRAIECKVDVLPRVHGSAV 341



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 32/210 (15%)

Query: 325 ISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           +S + G L ++  G+ L   GDT  +     G         S  GT        Y     
Sbjct: 15  LSFETGYLAKQAAGACLTQYGDTVVLTAAATGP--------SRPGTDFFPLTCDYRERTA 66

Query: 384 ATGE-----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--GSS 436
           A G+     + R G P+ +EI   RL  R I P+ P+   F   +++++ +  SD     
Sbjct: 67  AAGKFPGGFIKREGRPTTKEILTCRLMDRPIRPMFPKG--FRDEVQVMANVLSSDRQNDG 124

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
            +  + G+++AL  + +P   P+A + +  +   D+F++    + +E     +D  ++G 
Sbjct: 125 DVLAMNGAAVALGLSSLPFDGPLAAVRLAHI--NDEFVVFP--THEELEESDLDLIISGN 180

Query: 497 DSGITAMQMDMKIGGIS----ENIMVMALQ 522
              +      + I G S    E+IM+ A++
Sbjct: 181 KESV------LMIEGFSREMPEDIMLKAIE 204


>gi|213417627|ref|ZP_03350761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 196

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 126/179 (70%), Gaps = 1/179 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERT
Sbjct: 18  EFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 77

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P 
Sbjct: 78  YAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPD 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
           +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AV
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 196



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 84/183 (45%), Gaps = 19/183 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++ +  D  A+ V  +G ++ +   D    T      ++Y     A
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT------VNYQERTYA 79

Query: 385 TGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS  E    RL  R + P+ P+   F   +++++ +   +   +  
Sbjct: 80  AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEG--FVNEVQVIATVVSVNPQVNPD 137

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G +   D +++  + + DE     +D  VAGT+
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVL--NPTQDELKESKLDLVVAGTE 193

Query: 498 SGI 500
           + +
Sbjct: 194 AAV 196


>gi|77415113|ref|ZP_00791153.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
 gi|77158837|gb|EAO70108.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
          Length = 190

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 134/187 (71%)

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+
Sbjct: 3   EFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLT 62

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +  
Sbjct: 63  DIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHG 122

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I S
Sbjct: 123 AIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFS 182

Query: 598 SSLAEIE 604
           S  A I+
Sbjct: 183 SDQAAID 189


>gi|323191726|gb|EFZ76978.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
          Length = 222

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 140/200 (70%)

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + E
Sbjct: 2   MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 61

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A  
Sbjct: 62  FAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIR 121

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G 
Sbjct: 122 RIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 181

Query: 669 TVWVKLLDFDDRGKIKLSMK 688
            V VK+L+ D +G+++LS+K
Sbjct: 182 EVPVKVLEVDRQGRVRLSIK 201


>gi|218507624|ref|ZP_03505502.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli Brasil
           5]
          Length = 137

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 108/126 (85%)

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           VIR IVE+TGAK+NI+DDGTVKIASSS  EIEAAR+ I SI   PE+ +IY+G VVK  D
Sbjct: 1   VIREIVEKTGAKINIEDDGTVKIASSSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTAD 60

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           FGAFV+F GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ
Sbjct: 61  FGAFVNFFGARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQ 120

Query: 693 NTGKPI 698
            TG+ I
Sbjct: 121 ATGQEI 126


>gi|313608979|gb|EFR84725.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL F2-208]
          Length = 184

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 128/185 (69%), Gaps = 2/185 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ + S + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDA 184
           GT DA
Sbjct: 180 GTYDA 184



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 323 RDISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           + +S +VG L ++  G++L   GDT   VV+T      +           N     Y+  
Sbjct: 14  KTLSVEVGQLAKQASGAALIRYGDT---VVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVG 70

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI--TESDGSSSMA 439
               G + R G PS R     RL  R I P+  +   F   ++I S +   + D S  MA
Sbjct: 71  KVPGGFLKREGRPSDRATLTARLIDRPIRPLFAE--GFRNEVQITSTVFSVDQDCSPEMA 128

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
            + GSS+AL+ + +P   P+AG+ +G + DG  ++I   I   E     +   VAGT
Sbjct: 129 AMLGSSVALVISDIPFEGPIAGVDVGRI-DG-KYVINPTIEQAEKS--DISLTVAGT 181


>gi|223557964|gb|ACM90971.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium
           URE12]
          Length = 208

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 1/206 (0%)

Query: 489 MDFKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           MDFK+AG+ +G+TA QMD+K+  GI  +IM  A++QA RGR HIL  M K L + +  + 
Sbjct: 1   MDFKLAGSRNGVTAFQMDVKLASGIPMDIMKEAIEQATRGREHILGLMEKALPQPKSDIS 60

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           ++ PRV  + +P D+I   IG GGK IRGI+E+TGA + +++DGTV ++S     +EAAR
Sbjct: 61  QYAPRVAKLKLPKDKIGAFIGPGGKNIRGIIEKTGANIEVEEDGTVLVSSPDRDSLEAAR 120

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            M+   T   EV K+YKG+VV ++DFGAFV     ++GL+HIS++  +R  +  DV+  G
Sbjct: 121 SMVEQYTLEVEVGKVYKGRVVSIVDFGAFVEILPGKEGLLHISEIDVKRTNRVEDVLSVG 180

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQN 693
             + VK++D ++ GK +LS + + +N
Sbjct: 181 QEIEVKVIDMENSGKFRLSRRALLRN 206


>gi|71901440|ref|ZP_00683530.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71728811|gb|EAO30952.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 173

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 116/164 (70%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+YQE
Sbjct: 5   TKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E  
Sbjct: 65  KFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169
             + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E
Sbjct: 125 GDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSE 168


>gi|213423016|ref|ZP_03356034.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 233

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 9/237 (3%)

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVI 232
           V+GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K     +P  +
Sbjct: 1   VAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAV 60

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           +      L   ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+ 
Sbjct: 61  NDA----LNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELG 116

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +   I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  
Sbjct: 117 EILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTA 176

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           TLGT  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +
Sbjct: 177 TLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 233


>gi|282897292|ref|ZP_06305294.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
 gi|281197944|gb|EFA72838.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
          Length = 259

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 152/251 (60%), Gaps = 7/251 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I + GR ++L+ G +A Q+ G+VL   G+T VL T     + ++G DF PLTV+Y+ER Y
Sbjct: 8   ISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEA-REGIDFLPLTVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ QVI   +  D    P V
Sbjct: 67  AAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDELVPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIATLIAQIPFYGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPDGVIM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLA-KMCAKEPIVIDSKDFSKLEE 242
           VE  ANQL E  +++AI FG+   + +I+A    I++L   +  +EP + D    + + +
Sbjct: 187 VEAGANQLPERDIIEAIDFGYEAVRDLIQAQRDLIAELGLTIVLQEPPIPDQSLENYIRD 246

Query: 243 EMSQMIKEDLR 253
             S+ IK+  R
Sbjct: 247 RASEEIKKITR 257



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 20/201 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAIVVVTLGTREDEQYVDSL 366
           +DK +  DGRD      I  +VGLL    G S+ I  GDT   V+VT    E  + +D L
Sbjct: 4   IDKSISFDGRD------IRLKVGLLAPQAGGSVLIESGDTA--VLVTATRSEAREGIDFL 55

Query: 367 SGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
             T    + +     +P   G + R G P  R I   RL  R + P+ P   +    L++
Sbjct: 56  PLTVDYEERLYAAGRIPG--GIMRREGRPPERAILTSRLIDRPLRPLFPSWLR--DDLQV 111

Query: 426 VSEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           ++     D      +  V G+S+A + A +P   P+A + +GLV  GDDFII  + +  E
Sbjct: 112 IALTLSMDELVPPDVLAVTGASIATLIAQIPFYGPMAAVRVGLV--GDDFII--NPTYAE 167

Query: 484 DHLGHMDFKVAGTDSGITAMQ 504
              G +D  VAG+  G+  ++
Sbjct: 168 IEAGDLDLVVAGSPDGVIMVE 188


>gi|159481271|ref|XP_001698705.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
 gi|158273599|gb|EDO99387.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
          Length = 599

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 166/349 (47%), Gaps = 89/349 (25%)

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           +I V TLG+  D           R+D M  Y+F P + GE  R GAP             
Sbjct: 332 SICVATLGSAND---------ALRSDTMRKYHFPPSSVGETGRTGAP------------- 369

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
                          +R+ S ITES+GSSSMA+VCG  LA+MDAGVPI++PVAGIAMGL+
Sbjct: 370 ---------------VRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAMGLI 414

Query: 468 KDGDD-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
            + +    +LSDI G ED LG MDFKVAG    ITA QMD+KI                 
Sbjct: 415 LESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKID---------------- 458

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KV 585
                                            PD+   VIG GG+VI+ I + +GA  +
Sbjct: 459 ---------------------------------PDKKGAVIGSGGRVIKQIRDVSGATAI 485

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARD 644
           +ID+ G V + + S      A E ++ +   PE   I++ + V  +  FG FV  C  R 
Sbjct: 486 DIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCPGRQ 545

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GLVH+S+L        + VVK GD + V ++   D GK+ LS K V ++
Sbjct: 546 GLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQRH 594



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 142/217 (65%), Gaps = 2/217 (0%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ +KLETG I RQ++GA++AT GET++ AT     S      F PLTVNY ER  A G+
Sbjct: 94  GKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAGR 153

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
             GG+++R+ RP + E+L+SR++DR IRP+F+K + N+TQ++  V+ +D  + P  +++ 
Sbjct: 154 TSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAIT 213

Query: 133 AASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           AA+AAL++S +P +  V G +V    +G +++NP ++E + S LDL V+GT+DAVLM+E 
Sbjct: 214 AAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIEG 273

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
             + L+E+ +++A+  G      + + +   AK   K
Sbjct: 274 FCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGK 310


>gi|94502417|ref|ZP_01308863.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
 gi|94451026|gb|EAT14005.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
          Length = 267

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 157/258 (60%), Gaps = 8/258 (3%)

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDHLGHMDFKVAGT 496
           ATVC S+LALMD+G+ + +PV+GI+MGL+ +    + IILSD+ GDED++G MDFK+ GT
Sbjct: 1   ATVCASTLALMDSGIIVKRPVSGISMGLIMNYLTGEAIILSDLLGDEDYIGDMDFKITGT 60

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           + G+TA QMD+KI GI+ +++   + +AK+G L I+ +M   LS  R  L     ++   
Sbjct: 61  EYGMTACQMDIKISGITYDVLSYTIFKAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTF 120

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEAAREMIRSI 613
            IP   I  VIG GGK I+ I   T   + I +    G ++I   +  +++ A   I++I
Sbjct: 121 YIPKKLIGAVIGSGGKRIQEIQVSTETNIKIKEKNYLGVIEILGKNETKLKIAILKIKNI 180

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP+V  IYK +V  +  FG FV      +GL+HI ++S   + K    +++GD + VK
Sbjct: 181 TFVPKVGTIYKAKVKNIKKFGVFVKISKYLEGLLHIYEIS--WLTKVESFIRKGDIISVK 238

Query: 674 LLDFDDRG-KIKLSMKVV 690
            L  +++  KIKLS K++
Sbjct: 239 YLGKNNKFRKIKLSHKMI 256


>gi|213024825|ref|ZP_03339272.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 208

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 128/187 (68%)

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561
           A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+  + I  D
Sbjct: 1   ALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTD 60

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV +
Sbjct: 61  KIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGR 120

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           IY  +V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +G
Sbjct: 121 IYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG 180

Query: 682 KIKLSMK 688
           +++LS+K
Sbjct: 181 RVRLSIK 187


>gi|34787346|dbj|BAC87791.1| polynucleotide phosphorylase [Streptococcus bovis]
          Length = 159

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E  +AGRPL +E G++A+Q++GA +  YGE+ VL+  V  + +  G DFFPL VNY+
Sbjct: 4   QTFETTFAGRPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++
Sbjct: 63  EKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQY 161
           S  + +M  +S AL +S +PF GP+ G QV YI+G++
Sbjct: 123 SAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEF 159



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI--TESDGSSSMATVCGSSLA 447
           R G P+       RL  R I P+  +   F   +++++ +   + D S+ MA + GSSLA
Sbjct: 78  REGRPTTDATLTARLIDRPIRPMFAEG--FRNEVQVINTVLSYDEDASAPMAAMFGSSLA 135

Query: 448 LMDAGVPISKPVAGIAMGLVKDGD 471
           L  + +P + P+AG+ +  + DG+
Sbjct: 136 LSISDIPFNGPIAGVQVAYI-DGE 158


>gi|207109310|ref|ZP_03243472.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 204

 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/193 (48%), Positives = 122/193 (63%), Gaps = 5/193 (2%)

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           +A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+A
Sbjct: 1   MAKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVA 57

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           MG+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL Q
Sbjct: 58  MGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQ 117

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   
Sbjct: 118 AKKAREHILKIMHEAKEKIVINFSNL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEV 176

Query: 584 KVNIDD-DGTVKI 595
           K++++   G VKI
Sbjct: 177 KIDLNKPSGEVKI 189


>gi|255024685|ref|ZP_05296671.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J1-208]
          Length = 199

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 124/194 (63%)

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           QMD+KI G+S  I+  AL QAK GRLHIL  ++  +S  R +L  + P++  + I P++I
Sbjct: 1   QMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPKIITLNIKPEKI 60

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           ++VIG GGK I  I+++TG K++I+ DGTV IAS   A    A  +I  I    EV ++Y
Sbjct: 61  KDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVY 120

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
            G+V ++  FGAFV      DGLVHIS+L+ ERV K  D++K GD V VK+++ D +G++
Sbjct: 121 TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDQQGRV 180

Query: 684 KLSMKVVDQNTGKP 697
            LS K + +   +P
Sbjct: 181 NLSRKALLEKKEQP 194


>gi|195341761|ref|XP_002037474.1| GM12087 [Drosophila sechellia]
 gi|194131590|gb|EDW53633.1| GM12087 [Drosophila sechellia]
          Length = 285

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 140/229 (61%), Gaps = 3/229 (1%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ ++ GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 T-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           T Q+ V+M+E + N + +  +L AI  G  E + +I  I +L K   ++
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQ 266


>gi|73969676|ref|XP_865517.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 3 [Canis familiaris]
          Length = 367

 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 186/337 (55%), Gaps = 18/337 (5%)

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
           F PL V+Y+++  A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ 
Sbjct: 15  FMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVIDRSIRPLFPAGYFYDTQVLC 74

Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSL 174
           N++  D  + P V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP R +    +L
Sbjct: 75  NLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 134

Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK---MCAKEPI 230
           +L V+G  +  ++M+E  A  + +     AI  G    + +I+ I +L K   +  + P 
Sbjct: 135 NLVVAGAPKSQIVMMEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTP- 193

Query: 231 VIDSKDFS---KLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
               K F+   ++ E + ++  E L    + +  +K  R + I+ ++         +   
Sbjct: 194 ---QKLFTPSPEIVEHIHKLTMERLYAVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPE 250

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
            +  EI+  F  +  +V R+++L++  R DGRD  ++R+I+ +V L +  HGS+LF RG 
Sbjct: 251 ADTYEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQ 310

Query: 346 TQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHY 378
           TQ    VT  + E     ++ + +++G +  +FM+HY
Sbjct: 311 TQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHY 347


>gi|223557963|gb|ACM90970.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium
           URE12]
          Length = 316

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 148/253 (58%), Gaps = 3/253 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVN 62
           +  +E +   + L  ETG +A+Q+ GAV    GET+V +        KD   +F PL+ +
Sbjct: 7   ITRLETQVGDKTLYFETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCD 66

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+TYA GKIPGG+ +RE +  + EIL SR+ DRS+RPLF   +  ETQV   V+  D 
Sbjct: 67  YREKTYAAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFPDYFNTETQVNSLVISADG 126

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGT 181
           ++   V+S+ A+SAALM+S +PF GPV   ++   NG+++  P+ +E  G  ++L +SGT
Sbjct: 127 KNEADVLSINASSAALMISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGLEMELVISGT 186

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           +  +LMVE    Q+    ++ A+   H E   + +   ++ K+  K+   + + + + +L
Sbjct: 187 RQGILMVEGGGKQIPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINPEL 246

Query: 241 EEEMSQMIKEDLR 253
           +  + +M +E L+
Sbjct: 247 KAAVEEMSREPLK 259



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS--MATVCG 443
           G   R G    +EI   RL  R++ P+ P    F    ++ S +  +DG +   + ++  
Sbjct: 80  GFFKREGKARDKEILASRLTDRSVRPLFPD--YFNTETQVNSLVISADGKNEADVLSINA 137

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG-HMDFKVAGTDSGI 500
           SS ALM + +P + PV  + +G  K    FI        E+  G  M+  ++GT  GI
Sbjct: 138 SSAALMISDIPFNGPVGAVRIG--KKNGKFIFFPQ---HEERPGLEMELVISGTRQGI 190


>gi|313619119|gb|EFR90912.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           S4-378]
          Length = 193

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 109/171 (63%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GRLHIL  ++  +SE R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++
Sbjct: 1   GRLHILEHLTSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKID 60

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+ DGTV IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGL
Sbjct: 61  IEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGL 120

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           VHIS+L+ ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 121 VHISELAHERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 171


>gi|62867371|dbj|BAD95986.1| polyribonucleotide nuculeotidyltransferase [Campylobacter lari]
          Length = 243

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 26/223 (11%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           AG+   K VAG+AMGLV + + + IL+DI G EDH G MDFKVAG+  GITA+QMD+K+G
Sbjct: 1   AGIKSEKLVAGVAMGLVFEDEKYAILTDIMGLEDHDGDMDFKVAGSYEGITALQMDIKLG 60

Query: 511 GISENIMVMALQQAKRGRLHILNEMSK-----VLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           GI + ++  AL QAK  R HIL  M +     +++E+ L      P++EI  + P++I +
Sbjct: 61  GIEQQVLKEALYQAKEAREHILKLMEEADRNIIVNEAIL------PKIEIFNVDPNKIPD 114

Query: 566 VIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMI------------RS 612
           +IG GGK I+ I+E+    +++D D G VKIA  +   I  ++E I            R 
Sbjct: 115 IIGQGGKTIKEIIEKFEVNIDLDRDKGEVKIAGVNHDLISQSKEYILNLLHSKGSNKKRD 174

Query: 613 ITDVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
             ++P  ++ + + G+V KV++FG FV      DGL+H S++ 
Sbjct: 175 RKEMPKFDIGEEFIGKVQKVVEFGVFVELKDGVDGLLHNSKIK 217


>gi|207742729|ref|YP_002259121.1| c terminaus of polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
 gi|206594123|emb|CAQ61050.1| c terminaus of polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
          Length = 180

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 102/157 (64%)

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 1   MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 60

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 61  SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 120

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 121 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 157


>gi|330981095|gb|EGH79198.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 137

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQER 66
           + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+
Sbjct: 7   KFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEK 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P
Sbjct: 67  TYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDP 126

Query: 127 HVVSMVAASAA 137
            + +M+  SAA
Sbjct: 127 DIAAMIGTSAA 137


>gi|311252595|ref|XP_003125174.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Sus scrofa]
          Length = 487

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 2/186 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            TV ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+
Sbjct: 45  RTVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQD 183
            P V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP R +    +L+L V+G   
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVTGAPK 223

Query: 184 AVLMVE 189
           + + V+
Sbjct: 224 SQIDVQ 229



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 183/413 (44%), Gaps = 56/413 (13%)

Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R +    G L R   GS++   GDT  +V     T+         S +Q    ++ Y   
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKP--------SPSQFMPLVVDYRQK 105

Query: 382 PCATGEVS-----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG-- 434
             A G +      R    S +EI   R+  R+I P+ P  A + Y  +I+  +   DG  
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFP--AGYFYDTQILCNLLAVDGVN 163

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI-------------------- 474
              +  + G+S+AL  + +P + P+  + +G++ DG+  +                    
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPIGAVRIGMI-DGECVVNPTRKEMSSSTLNLVVTGAP 222

Query: 475 ---------ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                    + + + G ED+ G MDFK+AGT  GITA+Q D+K+ GI   I++ A+QQA 
Sbjct: 223 KSQIDVQPAVCAFVKGIEDYHGDMDFKIAGTAKGITALQADIKLPGIPIKIVMEAIQQAS 282

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL  M+K + + R    E  P VE + +P  +    +G GG  ++ +  +TG  +
Sbjct: 283 VAKKEILQIMNKTIPKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTI 342

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-F 639
           +  D+ T  I + + + +  A++ I  I         E   +Y   + ++ D G  V  +
Sbjct: 343 SQVDEETFSIFAPTPSAMHEAKDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLY 402

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
                 L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 403 PNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 455


>gi|217032225|ref|ZP_03437723.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
 gi|216946096|gb|EEC24707.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
          Length = 292

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 131/212 (61%), Gaps = 7/212 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECK 212
            M+E+ +     N L E ++L A+       K
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLK 214


>gi|23012215|ref|ZP_00052356.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 150

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 79/106 (74%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASS    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L
Sbjct: 1   MKIASSDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISEL 60

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + +RVAK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+ I
Sbjct: 61  AAQRVAKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDI 106


>gi|207108928|ref|ZP_03243090.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 190

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 122/187 (65%), Gaps = 2/187 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP     +Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFLINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA 192
            M+E+ +
Sbjct: 183 NMIEMRS 189


>gi|289524567|ref|ZP_06441421.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502193|gb|EFD23357.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 187

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 99/141 (70%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+E  GR L   TG +A+Q++GAV A YG+T VL T   +   ++  DFFPL V+Y+ER 
Sbjct: 13  EVEIGGRTLVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERF 72

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+++RE +P+E+ IL +R++DRSIR LF +  KN+  V+  ++  D  + P 
Sbjct: 73  YAAGKIPGGFIKREGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSVDQTNPPD 132

Query: 128 VVSMVAASAALMLSGLPFEGP 148
           V+++ AASAAL +S +P++GP
Sbjct: 133 VLAINAASAALAISDIPWDGP 153


>gi|266619742|ref|ZP_06112677.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
 gi|288868673|gb|EFD00972.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
          Length = 192

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 94/142 (66%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           G++ P++E + I P +I +V+G  GKVI  I+E+TG K++I DDG+V +  +    I  A
Sbjct: 1   GKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGSVSVCGTDKDMIARA 60

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E+I+SI    E   + KG+VV++M+FGAFV     +DG+VHIS+LS +RV K  D V  
Sbjct: 61  IEIIKSIVTDIEPGAVMKGKVVRIMNFGAFVELAPNKDGMVHISKLSDKRVEKVEDAVNI 120

Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688
           GD V V++L+ D  G+I LSMK
Sbjct: 121 GDEVTVRVLEVDKMGRINLSMK 142


>gi|110589244|gb|ABG77131.1| polyribonucleotide nucleotidyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 137

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 77/103 (74%)

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           GT  GI A+QMD+KI GI++ IM +AL+QAK GRLHIL+EM++V+S  R ++ E  PR+ 
Sbjct: 29  GTAQGINALQMDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRII 88

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + I PD+IR+VIG GG  IRGI E TGA V+I DDG VKI S
Sbjct: 89  EIKINPDKIRDVIGKGGVTIRGITEATGATVDITDDGIVKIFS 131


>gi|155183643|gb|ABT17081.1| polynucleotide phosphorylase [Dichelobacter nodosus]
          Length = 133

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 86/128 (67%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           ++I++VIG GG  IR I EQTG  + I+DDG+VKIA++  A    AR +I  I   PE+ 
Sbjct: 3   EKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATDKAAAANARRLIEEIVAEPEIG 62

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY  +V K+ DFGAF+ F   ++GLVHISQ++  RV    D + EG  V VKLL+ D +
Sbjct: 63  RIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDELTEGQEVKVKLLEIDRQ 122

Query: 681 GKIKLSMK 688
           G+++LS+K
Sbjct: 123 GRVRLSIK 130


>gi|73969674|ref|XP_865499.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 2 [Canis familiaris]
          Length = 209

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
           F PL V+Y+++  A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ 
Sbjct: 15  FMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVIDRSIRPLFPAGYFYDTQVLC 74

Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSL 174
           N++  D  + P V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP R +    +L
Sbjct: 75  NLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 134

Query: 175 DLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFG 207
           +L V+G  +  ++M+E  A  + +     AI  G
Sbjct: 135 NLVVAGAPKSQIVMMEASAENILQQDFCHAIKVG 168


>gi|77407303|ref|ZP_00784238.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
 gi|77174088|gb|EAO77022.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
          Length = 223

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 6/221 (2%)

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFI 258
           +L+A++ GH     +I    ++     KE   ++      +L+ E+       L+ +  +
Sbjct: 1   MLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEIIATHNIALQAAVQV 60

Query: 259 PEKYVRCKQIDDLKKKMVSYFSS---EHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVR 313
            EK  R    + +K+ ++  + +   EH  ++    ++  + E ++   VR ++ + K+R
Sbjct: 61  EEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEHAEVRRLITEDKIR 120

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
            DGR  + +R + A++  L + HGS LF RG TQA+ V+TL    + Q +D L+   +  
Sbjct: 121 PDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYKKR 180

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP
Sbjct: 181 FMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLP 221


>gi|307700245|ref|ZP_07637285.1| KH domain protein [Mobiluncus mulieris FB024-16]
 gi|307614456|gb|EFN93685.1| KH domain protein [Mobiluncus mulieris FB024-16]
          Length = 249

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 14/198 (7%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++V AL QA+  RL IL+ M   + ++  +L    PR+  + IP D+I  VIG  G
Sbjct: 1   IPSDVLVGALGQARDARLKILDVMHAAI-DTPDELAPTAPRIITVNIPVDKIGEVIGPKG 59

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           K+I  I E TGA++ I+DDGTV I + +    EAAR+ + +I +  +PEV + + G VVK
Sbjct: 60  KMINQIQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVK 119

Query: 630 VMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              FGAF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L
Sbjct: 120 TTTFGAFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSL 179

Query: 686 -------SMKVVDQNTGK 696
                  +    D+N+G+
Sbjct: 180 LAVVDDEAATTADENSGE 197


>gi|167945861|ref|ZP_02532935.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 205

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 113/196 (57%), Gaps = 10/196 (5%)

Query: 149 VVGA-QVDYINGQYVLNPR---LDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAI 204
           +VGA +V Y +G+Y+LN     L  D   LDL V+GT++AVLMVE EAN+LSE+V+L A+
Sbjct: 8   LVGACRVGYKDGEYILNAASTGLSADS-DLDLIVAGTEEAVLMVESEANELSEEVMLGAV 66

Query: 205 IFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYV 263
           +FGH + + VI+ I+ LA    K     +S    + L   +++  +  +  +  I +K  
Sbjct: 67  LFGHEQSQIVIDTINALAAEVGKAAGEFESPTVDEALTAAVAEAAEVGMGDAYSIADKLE 126

Query: 264 RCKQIDDLK----KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319
           R    D +K    +K+ S    E   W+  E+    E ++ ++VR  +LD + R+DGRD+
Sbjct: 127 RYAAADAVKEATLEKLCSAAEGEEPRWSTDEVKGALEKLKKRIVRGRILDGEPRIDGRDT 186

Query: 320 ETVRDISAQVGLLQRT 335
            TVR IS + G+L RT
Sbjct: 187 RTVRPISVRTGVLPRT 202


>gi|31335241|gb|AAP44472.1| PNPase [Homo sapiens]
          Length = 275

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 15/244 (6%)

Query: 462 IAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +A+GLV   D       D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI  
Sbjct: 1   VAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPI 60

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            I++ A+QQA   +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  +
Sbjct: 61  KIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNL 120

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVK 629
           + +  +TG  ++  D+ T  + + + + +  AR+ I  I         E   +Y   + +
Sbjct: 121 KKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITE 180

Query: 630 VMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLS 686
           + D G  V  +      L+H +QL   ++   + +  E G  + VK    D   G+++LS
Sbjct: 181 IRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 240

Query: 687 MKVV 690
            KV+
Sbjct: 241 RKVL 244


>gi|167947925|ref|ZP_02534999.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 99

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 70/93 (75%)

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           MD+KI GI++ IM +AL+QAK GRLHIL+EM++V+S  R ++ E  PR+  + I PD+IR
Sbjct: 1   MDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRIIEIKINPDKIR 60

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           +VIG GG  IRGI E TGA V+I DDG VKI S
Sbjct: 61  DVIGKGGVTIRGITEATGATVDITDDGIVKIFS 93


>gi|270717143|ref|ZP_06223257.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
          HK1212]
 gi|270315521|gb|EFA27748.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
          HK1212]
          Length = 82

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/76 (63%), Positives = 59/76 (77%)

Query: 16 LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
          + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERTYA GKIPG
Sbjct: 7  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIPG 66

Query: 76 GYLRRESRPTENEILI 91
          G+ +RE RP+E E LI
Sbjct: 67 GFFKREGRPSEGETLI 82


>gi|13543675|gb|AAH05986.1| PNPT1 protein [Homo sapiens]
          Length = 263

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +  
Sbjct: 5   EDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKE 64

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D+
Sbjct: 65  ILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE 124

Query: 591 GTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARD 644
            T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V  +     
Sbjct: 125 ETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 184

Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
            L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 185 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 232


>gi|34785309|gb|AAH00862.2| PNPT1 protein [Homo sapiens]
          Length = 266

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +  
Sbjct: 8   EDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKE 67

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D+
Sbjct: 68  ILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE 127

Query: 591 GTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARD 644
            T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V  +     
Sbjct: 128 ETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 187

Query: 645 GLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
            L+H +QL   ++   + +  E G  + VK    D   G+++LS KV+
Sbjct: 188 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 235


>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
 gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
          Length = 245

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 14/239 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R++   VG++    GS++   G+T A+  V  G RE   +   LS   R 
Sbjct: 14  RADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAV-YGPRE--MHPRHLSLPDRA 70

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + Y+  P +T +  +  APSRREI   ++ R A+ P +    QFP + + +  EI +
Sbjct: 71  VMRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAI-FLEQFPRSRIDVFVEIVQ 129

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DGS+ +A++  +SLAL DAGVP+   V G+++GLV    +  ++ D++G ED+ G  D 
Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDLVIGVSVGLV----NGTVVLDLNGLEDNYGEGDM 185

Query: 492 KVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            V    +   IT +Q+D   G  S +    AL+ A +G  ++ ++  + L     ++ E
Sbjct: 186 PVGYMPNLGRITLLQLD---GSWSRDKFAEALKLAIKGAEYVYSKAREALKTKYFEIAE 241



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +K+  G I+  +DG+ + +YG T  +A V   R +       P     + R Y +   
Sbjct: 24  REVKISVGVIS-NADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMRVR-YHMAPF 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                R+   P+  EI IS+++  ++ P     +  ++   V + ++Q D   S  V S+
Sbjct: 82  STRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQAD--GSTRVASL 139

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFV 178
            AAS AL  +G+P    V+G  V  +NG  VL+   L+++ G  D+ V
Sbjct: 140 TAASLALADAGVPMRDLVIGVSVGLVNGTVVLDLNGLEDNYGEGDMPV 187


>gi|294337639|emb|CBI62618.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 171

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 101/171 (59%), Gaps = 7/171 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           KI GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++I
Sbjct: 1   KIKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +++     MD  FGA        +G +HIS+L   +V K  DV+K G  + 
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVIL 171


>gi|294337647|emb|CBI62622.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 171

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 7/171 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +++     MD  FGA        +G +HIS+L   +V K  DV+K G  + 
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVIL 171


>gi|294337651|emb|CBI62624.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
 gi|294337653|emb|CBI62625.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 170

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 102/170 (60%), Gaps = 7/170 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++     MD  FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVI 170


>gi|294337641|emb|CBI62619.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
 gi|294337643|emb|CBI62620.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
 gi|294337645|emb|CBI62621.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 171

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 7/171 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +++     MD  FGA        +G +HIS+L   +V K  DV+K G  + 
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVIL 171


>gi|218672367|ref|ZP_03522036.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli GR56]
          Length = 69

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 53/58 (91%)

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 1   GARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 58


>gi|218461914|ref|ZP_03502005.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli Kim 5]
          Length = 70

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 53/58 (91%)

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 2   GARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 59


>gi|294337637|emb|CBI62617.1| polynucleotide phosphorylase [Candidatus Phytoplasma prunorum]
          Length = 170

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 99/170 (58%), Gaps = 7/170 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           I GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++IG
Sbjct: 1   IKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNKVSKYAPKVKMISINPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     IR+     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMKIVDLTIIYIRNFLKKIKVETVYEVKI 120

Query: 628 VKVMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++ +       FG         +G +HIS+L   RV K  DV+K G  + 
Sbjct: 121 IRFVKDKIGKTFGVIAEIFPGVEGFIHISKLENYRVDKVEDVLKIGQIIL 170


>gi|294337655|emb|CBI62626.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
 gi|294337657|emb|CBI62627.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 7/170 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           I GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG
Sbjct: 1   IKGITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKI 120

Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++     MD  FGA        +G +HIS+L   +V K  DV+K G  + 
Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170


>gi|294337635|emb|CBI62616.1| polynucleotide phosphorylase [Candidatus Phytoplasma prunorum]
          Length = 170

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 99/170 (58%), Gaps = 7/170 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++IG
Sbjct: 1   VKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNKVSKYAPKVKMISINPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     IR+     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMKIVDLTIIYIRNFLKKIKVETVYEVKI 120

Query: 628 VKVMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++ +       FG         +G +HIS+L   RV K  DV+K G  + 
Sbjct: 121 IRFVKDKIGKTFGVIAEIFPGVEGFIHISKLENYRVDKVEDVLKIGQIIL 170


>gi|294337663|emb|CBI62630.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 101/170 (59%), Gaps = 7/170 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + GI+  I    L+QAK+ R++ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG
Sbjct: 1   VKGITLEIFEKVLEQAKKDRINILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKI 120

Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++     MD  FGA        +G +HIS+L   +V K  DV+K G  + 
Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170


>gi|218678596|ref|ZP_03526493.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CIAT
           894]
          Length = 112

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/94 (56%), Positives = 71/94 (75%), Gaps = 1/94 (1%)

Query: 161 YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           YVLNP LDE D+ SLDL V+GT DAVLMVE EA +L+E+V+L A++FGHN  +PV++AI 
Sbjct: 1   YVLNPHLDEMDESSLDLVVAGTYDAVLMVESEAKELNEEVMLGAVMFGHNGFQPVLDAII 60

Query: 220 KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLR 253
           KLA++ AKEP     +D+S LE EM  + + +LR
Sbjct: 61  KLAEVAAKEPRDFQPEDYSALETEMLGLAEGELR 94


>gi|294337661|emb|CBI62629.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 100/170 (58%), Gaps = 7/170 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG
Sbjct: 1   VKGITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVAYIQNFLKKIKVENVYEVKI 120

Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++     MD  FGA        +G +HIS+L   +V K  DV+K G  + 
Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170


>gi|294337659|emb|CBI62628.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 100/170 (58%), Gaps = 7/170 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG
Sbjct: 1   VKGITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKI 120

Query: 628 VKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++     MD  FGA        +G +HIS+L   +V K  DV+K G  + 
Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIIL 170


>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
 gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
 gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 493

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 120/240 (50%), Gaps = 20/240 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           T++ D  +R+DGR ++ +R +  +VG+L R  GS     G  + I+V   G RE      
Sbjct: 9   TLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNK-ILVGVFGPREAHP--- 64

Query: 365 SLSGTQRND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
               +QR D       YN    +  + +R G PSRR I   +++R A  PV+     FP 
Sbjct: 65  --RRSQRADSAVIRYRYNMASFSVEDRARPG-PSRRSIEISKVSREAFEPVI-MAELFPK 120

Query: 422 T-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           T + I  E+ ++D  +  A +  SS+AL DAG+P+   +   A G V    D  I+ D++
Sbjct: 121 TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKV----DGKIVLDLN 176

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            +ED+ G  DF VA T  G IT +QMD   G ++ + +   L+  K+G   IL     VL
Sbjct: 177 KEEDNYGEADFPVAMTQDGEITLIQMD---GNLTPDEIKQGLELVKKGCKEILEIQQAVL 233



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 18/211 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G ++R +DG+    +G   +L  V   R     +    D   +   Y   +++
Sbjct: 27  RPMKIEVGVLSR-ADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPH 127
           V        R    P+   I IS++   +  P + ++ + K    + + V+Q D  +   
Sbjct: 86  VED------RARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA-V 185
             ++ A+S AL  +G+P +G +       ++G+ VL+   +ED  G  D  V+ TQD  +
Sbjct: 138 TAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVAMTQDGEI 197

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
            +++++ N L+ D +   +      CK ++E
Sbjct: 198 TLIQMDGN-LTPDEIKQGLELVKKGCKEILE 227


>gi|294337649|emb|CBI62623.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 170

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 103/170 (60%), Gaps = 7/170 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  +G + I   ++  ++     I++     ++  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQNGKIYIMHQNMEIVDLTIAYIKNFLKKIKLETVYEVK 120

Query: 627 VVKV----MD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++     MD  FGA        +G +HIS+L+  +V K  DV+K G  +
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLANYKVDKVEDVLKIGQII 170


>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
 gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
           str. Fusaro]
          Length = 501

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 120/239 (50%), Gaps = 20/239 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D  +R+DGR ++ +R +  ++G+L R  GS     G  + +V V  G RE       
Sbjct: 8   LITDDGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGV-FGPREAHPRR-- 64

Query: 366 LSGTQRNDFMM---HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
              +QR D  +    YN    +T + +R G PSRR I   +++R A  PV+     FP T
Sbjct: 65  ---SQRADTAVIRYKYNMASFSTEDRARPG-PSRRSIEISKVSREAFEPVI-MAELFPKT 119

Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  EI ++D  +  A +  SS+AL DAG+P+   V   A G V    D  I+ D++ 
Sbjct: 120 AIDIFVEILQADAGTRTAAINASSIALADAGIPMKGLVTSCAFGKV----DGQIVLDLNK 175

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +ED+ G  DF VA T  G IT +QMD   G ++ + +    +  K+G   IL     VL
Sbjct: 176 EEDNYGEADFPVAMTQDGEITLLQMD---GNLTTDEIRKGFELVKKGCKEILEIQQAVL 231



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           RP+K+E G ++R +DG+    +G   VL  V   R    +  Q      + Y+   Y + 
Sbjct: 25  RPMKIEIGVLSR-ADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVIRYK---YNMA 80

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129
                  R    P+   I IS++   +  P + ++ + K    + + ++Q D  +     
Sbjct: 81  SF-STEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQAD--AGTRTA 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA-VLM 187
           ++ A+S AL  +G+P +G V       ++GQ VL+   +ED  G  D  V+ TQD  + +
Sbjct: 138 AINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNYGEADFPVAMTQDGEITL 197

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIE 216
           ++++ N L+ D +          CK ++E
Sbjct: 198 LQMDGN-LTTDEIRKGFELVKKGCKEILE 225


>gi|213023529|ref|ZP_03337976.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 96

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-D 170
           QVI  V+  + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  
Sbjct: 2   QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 61

Query: 171 QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAII 205
           +  LDL V+GT+ AVLMVE EA  LSED +L A++
Sbjct: 62  ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVV 96


>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
 gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
           thermophila PT]
          Length = 245

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 120/243 (49%), Gaps = 14/243 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           V +   +R+DGR  + +R I  +VG+L+R  GS     GD + I  V  G RE   +   
Sbjct: 5   VFIKDGIRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAV-YGPRE--VHPRH 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           L    R      YN    +  E  R G P RR     +++R A+ PV+  T+ FP + + 
Sbjct: 62  LQEVNRAIIRYRYNMASFSVEERRRPG-PDRRSYELSKVSREALEPVI-LTSYFPKSVID 119

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++D  +  A +  +S+AL DAG+P+   V+  A G V DG    I+ D   DED
Sbjct: 120 IFVEVLQADAGTRTAGINAASVALADAGIPMRSLVSSCAAGKV-DGQ---IVLDPMKDED 175

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           + G  D  +A T +G IT +QMD   G ++ +    A++ AK+G   I     +VL E  
Sbjct: 176 NFGQADMPIAITPTGEITLLQMD---GILTRDEFRQAMELAKKGCQEIYKIQRRVLIERY 232

Query: 544 LQL 546
            Q 
Sbjct: 233 SQF 235



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 18/209 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E G + +++DG+     G+  V+A V     V+ R L++      +   Y   ++
Sbjct: 22  RPIKMEVG-VLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAI-IRYRYNMASF 79

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSP 126
           +V +      RR   P      +S++   ++ P+    Y  K+   + + V+Q D  +  
Sbjct: 80  SVEE------RRRPGPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVLQAD--AGT 131

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
               + AAS AL  +G+P    V       ++GQ VL+P  DED  G  D+ ++ T    
Sbjct: 132 RTAGINAASVALADAGIPMRSLVSSCAAGKVDGQIVLDPMKDEDNFGQADMPIAITPTGE 191

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPV 214
           + +      L+ D    A+      C+ +
Sbjct: 192 ITLLQMDGILTRDEFRQAMELAKKGCQEI 220


>gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
          Length = 245

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 12/197 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +   LS   R 
Sbjct: 16  RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRHLSLPDRA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + + +EI +
Sbjct: 73  VLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAIDVFTEILQ 130

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED  G  D 
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPEDMWGEADM 186

Query: 492 KVAGTDS--GITAMQMD 506
            VA   S   +T  Q++
Sbjct: 187 PVAMMPSLNQVTLFQLN 203



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED  G  D+ V+   + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSED 198
           V + +L  N   E+
Sbjct: 197 VTLFQLNGNMTPEE 210


>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
 gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
 gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
          Length = 246

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 19/240 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  E +R +  QVG+L    GS+L   G T+ +  V  G RE  Q    L    R 
Sbjct: 17  RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAV-YGPREPHQRFYVLP--DRA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + Y+  P +T E  +  APSRREI   ++ R A+ PV+    +FP T + +  E+ +
Sbjct: 74  ALRVRYHMAPFSTDE-RKSPAPSRREIELSKVVREALEPVV-LAEEFPRTVIDVFLEVLQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +  A V  +SLAL DAG+P+   V G+A+G ++     +++ D+   ED  G  D 
Sbjct: 132 ADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQG----VLVVDVDELEDMYGEADM 187

Query: 492 KVAGT-DSG-ITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHILNEMSK-VLSESRLQLG 547
            VA   D G IT +Q++  + G      + MAL+   R     + EM K  + +S L++G
Sbjct: 188 PVAAAPDIGEITLLQLNGVLTGEEFRTALAMALRAIDR-----VVEMEKEAIRKSYLEVG 242



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 20/179 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF------PLTVNYQERT 67
           RP++++ G I   +DG+ L  +G T VLA V   R  +  Q F+       L V Y    
Sbjct: 27  RPVRMQVG-ILHNADGSALVEFGRTRVLAAVYGPR--EPHQRFYVLPDRAALRVRYHMAP 83

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESS 125
           ++  +      R+   P+  EI +S+++  ++ P  L  +  +    V + V+Q D    
Sbjct: 84  FSTDE------RKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQAD--GG 135

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQD 183
               ++ AAS AL  +G+P    V G  V  I G  V++   L++  G  D+ V+   D
Sbjct: 136 TRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAPD 194


>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
 gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
 gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
 gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
 gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
 gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
 gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
 gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
 gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
 gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
 gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
 gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
 gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
 gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
 gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
 gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
          Length = 248

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 10/190 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD   R DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +   
Sbjct: 12  LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 68

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           LS   R    + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + 
Sbjct: 69  LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 127 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETED 182

Query: 485 HLGHMDFKVA 494
             G  D  +A
Sbjct: 183 MWGEADMPIA 192



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 29  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 87

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 88  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 139

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           +VS++AAS AL  +G+P    + G  V   +G  +L+    ED  G  D+ ++
Sbjct: 140 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIA 192


>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
 gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
          Length = 245

 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 10/190 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD   R DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +   
Sbjct: 9   LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           LS   R    + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + 
Sbjct: 66  LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETED 179

Query: 485 HLGHMDFKVA 494
             G  D  +A
Sbjct: 180 MWGEADMPIA 189



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           +VS++AAS AL  +G+P    + G  V   +G  +L+    ED  G  D+ ++
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIA 189


>gi|239636248|ref|ZP_04677250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
          L37603]
 gi|239597603|gb|EEQ80098.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
          L37603]
          Length = 89

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 8  EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
          + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVNY+E+ 
Sbjct: 9  KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVNYEEKM 67

Query: 68 YAVGKIPGGYLRRE 81
          YA GKIPGG+ + +
Sbjct: 68 YAAGKIPGGFKKEK 81


>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
 gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
          Length = 244

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 18/225 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGRD E +R I  + G+L R  GS     G  + +V    G RE   +   L    + 
Sbjct: 12  RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNK-VVAAVYGPRE--VHPKHLEDPSKA 68

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
                Y+  P +  E  R G P RR I   +++R A+ PV+ +   FP + + I  E+ +
Sbjct: 69  IIRYRYSMAPFSVEERKRPG-PDRRSIEISKVSREALEPVIMKEL-FPRSAIDIFVEVLQ 126

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  S  A +  +S+AL+DAG+P+   V  +A+  V    D I++ D   +ED+ G  D 
Sbjct: 127 ADAGSRTACLNAASVALIDAGIPMKGMVTSVAVAKV----DGILVLDPMKEEDNYGEADI 182

Query: 492 KVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             A     G    IT +QMD   G +S+  +  AL+ AK+G + I
Sbjct: 183 PFAFLIRNGKIESITLLQMD---GRVSKEELKKALEMAKKGAMQI 224



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 18/171 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E G + R +DG+     G   V+A V     V+ + L+D      +   Y    +
Sbjct: 22  RPIKIEAGVLNR-ADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAI-IRYRYSMAPF 79

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSP 126
           +V +      R+   P    I IS++   ++ P+  K    ++   + + V+Q D  S  
Sbjct: 80  SVEE------RKRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQADAGS-- 131

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
               + AAS AL+ +G+P +G V    V  ++G  VL+P  +ED  G  D+
Sbjct: 132 RTACLNAASVALIDAGIPMKGMVTSVAVAKVDGILVLDPMKEEDNYGEADI 182


>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
 gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
 gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
 gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
          Length = 245

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 12/204 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L+   R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +   
Sbjct: 9   LILEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           LS   R    + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + 
Sbjct: 66  LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDS--GITAMQMD 506
             G  D  VA   S   +T  Q++
Sbjct: 180 MWGEADMPVAMMPSLNQVTLFQLN 203



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED  G  D+ V+   + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSED 198
           V + +L  N   E+
Sbjct: 197 VTLFQLNGNMTPEE 210


>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
 gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
 gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
 gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
 gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
 gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
 gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
 gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
          Length = 245

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 115/212 (54%), Gaps = 13/212 (6%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q +  + ++ D K R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +
Sbjct: 2   LQVERPKLILEDGK-RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPK 59

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           E   +   LS   R    + Y+  P +T E  +  APSRREI   ++ R A+   +    
Sbjct: 60  E--MHPRHLSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVE 115

Query: 418 QFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            FP T + + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+
Sbjct: 116 LFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIV 171

Query: 477 SDISGDEDHLGHMDFKVAGTDS--GITAMQMD 506
            D++  ED  G  D  VA   S   +T  Q++
Sbjct: 172 LDLNEPEDMWGEADMPVAMMPSLNQVTLFQLN 203



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED  G  D+ V+   + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSED 198
           V + +L  N   E+
Sbjct: 197 VTLFQLNGNMTPEE 210


>gi|237805484|ref|ZP_04592188.1| BCCT transporter [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026591|gb|EGI06646.1| BCCT transporter [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 215

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 63/85 (74%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D+
Sbjct: 121 EAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDI 180

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           +KEG+ V V +LD D+RG+IKLS+K
Sbjct: 181 LKEGEEVEVLVLDVDNRGRIKLSIK 205


>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
 gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
          Length = 245

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 12/204 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L+   R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +   
Sbjct: 9   LILEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           LS   R    + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + 
Sbjct: 66  LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEAED 179

Query: 485 HLGHMDFKVAGTDS--GITAMQMD 506
             G  D  VA   S   +T  Q++
Sbjct: 180 MWGEADMPVAMMPSLNQVTLFQLN 203



 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED  G  D+ V+   + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEAEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSED 198
           V + +L  N   E+
Sbjct: 197 VTLFQLNGNMTPEE 210


>gi|47218202|emb|CAF97066.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 239

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 8/210 (3%)

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFK+AGT+ GITA+Q D+KI G+   +++ A+QQA   +  IL  M+K +++ R    E
Sbjct: 1   MDFKLAGTNKGITALQADVKIPGLPLKLVMEAIQQATVAKREILAIMNKCIAKPRASRKE 60

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             P VE + +P  +    +G GG  +R +  QTGA +N  D+ T  + + +   +    E
Sbjct: 61  NGPVVENVRVPVSKRARFVGPGGYNLRKLQAQTGATINQVDEETFSVFAPTPGAMNEVLE 120

Query: 609 MIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSD 662
            I  I+        E   +Y   + ++ D G  V  +      L+H SQL  +R+   S 
Sbjct: 121 FISEISKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPNMSPVLLHNSQLDHKRIKHPSA 180

Query: 663 VVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  E G  + VK    D   G+++LS KV+
Sbjct: 181 LGLEVGQQIQVKYFGRDPTDGRMRLSRKVL 210


>gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
          Length = 245

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 12/197 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +   LS   R 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRHLSLPDRA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + + +EI +
Sbjct: 73  VLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAIDVFTEILQ 130

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED  G  D 
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPEDMWGEADM 186

Query: 492 KVAGTDS--GITAMQMD 506
            VA   S   +T  Q++
Sbjct: 187 PVAMMPSLNQVTLFQLN 203



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED  G  D+ V+   + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSED 198
           V + +L  N   E+
Sbjct: 197 VTLFQLNGNMTPEE 210


>gi|51491297|emb|CAH18709.1| hypothetical protein [Homo sapiens]
          Length = 246

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 110/215 (51%), Gaps = 8/215 (3%)

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +  IL  M+K +S+ R
Sbjct: 1   DYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPR 60

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
               E  P VE + +P  +    +G GG  ++ +  +TG  ++  D+ T  + + + + +
Sbjct: 61  ASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAM 120

Query: 604 EAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERV 657
             AR+ I  I         E   +Y   + ++ D G  V  +      L+H +QL   ++
Sbjct: 121 HEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKI 180

Query: 658 AKTSDVVKE-GDTVWVKLLDFDDR-GKIKLSMKVV 690
              + +  E G  + VK    D   G+++LS KV+
Sbjct: 181 KHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 215


>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
 gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
 gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str.
           7]
          Length = 247

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 15/231 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD  +R+DGR  + +R I  ++G+L+   GS++F  G+T+ I  V  G +  E +   
Sbjct: 13  LILDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAV-YGPK--EMHPRH 69

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           L+   R    + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + 
Sbjct: 70  LALPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESTI-LVELFPRTVID 127

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + + ++  +S+AL DAG+P+   +AG+A+G      D +++ D++  ED
Sbjct: 128 VFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVG----KADGVLVLDLNEPED 183

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G  D  VA   S   +  +Q++   G ++      AL+ A++G   I N
Sbjct: 184 MWGEADMPVAMMPSLKQVALLQLN---GNMTPQEFRQALEMAQKGIETIYN 231



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ +   G T V+A V   + +       P    L V Y    ++
Sbjct: 30  RPIKIELG-VLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFS 88

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V + V+Q D  +   
Sbjct: 89  TDE------RKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD--AGTR 140

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED  G  D+ V+
Sbjct: 141 LVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVA 193


>gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
          Length = 242

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           + V++   +R+DGR  E +R +   +G+L+  +GS+L   G+T+A+  V  G RE     
Sbjct: 4   KPVLIRDGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAV-YGPRE--ALP 60

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YT 422
             +S   R    + Y+  P +T E  +  APSRREI   ++ R A+  V+  T+QFP  +
Sbjct: 61  KHISLPDRAILRVRYHMAPFSTTE-RKSPAPSRREIELSKVIREALESVV-FTSQFPRAS 118

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + +  EI ++DG +    +  +SLAL DAG+P+   V G+A+G V    D +++ DI+  
Sbjct: 119 IDVFIEILQADGGTRTTGLTAASLALADAGIPMRDLVIGVAVGKV----DGVLVLDINEL 174

Query: 483 EDHLGHMDFKV 493
           ED  G  D  V
Sbjct: 175 EDEYGEADLPV 185



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++  G + + ++G+ L  YG T  LA V   R         P    L V Y    ++
Sbjct: 23  RPVRIALG-VLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILRVRYHMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++  +   S+  +    V I ++Q D      
Sbjct: 82  TTE------RKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD--GGTR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVL 186
              + AAS AL  +G+P    V+G  V  ++G  VL+   L+++ G  DL V    +   
Sbjct: 134 TTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDEYGEADLPVGIMPNTGE 193

Query: 187 MVELEAN 193
           +V L+ N
Sbjct: 194 IVLLQLN 200


>gi|255027710|ref|ZP_05299696.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J2-003]
          Length = 137

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 71/116 (61%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           G K++I+ DGTV IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV    
Sbjct: 1   GVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFK 60

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DGLVHIS+L+ ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 61  GTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 116


>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
           V24Sta]
 gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
 gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta]
          Length = 246

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   VR DGR  + +R++   VG++    GS++   G T A+  V  G RE   +   L
Sbjct: 8   LLQGGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +    Q+P + + +
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAV-MLEQYPRSRIDV 123

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             EI ++DGS+ +A++  +SLAL DAG+ +   V G+++GLV    D  ++ D++G ED 
Sbjct: 124 FIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLV----DGTVVLDLNGLEDQ 179

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  V    +    T +Q+D   G    + ++ AL  A +G   +  +    L    
Sbjct: 180 YGEGDLPVGYMPNLRRYTLLQLD---GAWGRDKLLEALNLAVKGAEFVYQKARDALKNRY 236

Query: 544 LQLGE 548
           + + E
Sbjct: 237 MAIAE 241



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 15/172 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +++  G I+  +DG+ + +YG T  +A V   R +       P    + V Y    ++
Sbjct: 24  REVQISVGVIS-NADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
                    R+   P+  EI IS+++  ++ P  +  +  ++   V I ++Q D   S  
Sbjct: 83  TKD-----ERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD--GSTR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
           V S+ AAS AL  +G+     V+G  V  ++G  VL+    EDQ G  DL V
Sbjct: 136 VASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPV 187


>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
 gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
 gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
           DSM 4184]
          Length = 246

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +    VR DGR  + +R+++  VG++    GS++   G T A+  V  G RE   +   L
Sbjct: 8   LFQNGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425
           S   R    + Y+  P +T +  +   P+RREI   ++ R A+ P +    Q+P + + +
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAV-VLEQYPRSRIDV 123

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             EI ++DGS+ +A++  +SLAL DAGV +   V G+++GLV    D  ++ D++G ED 
Sbjct: 124 FIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLV----DGAVVLDLNGLEDQ 179

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  V    +    T +Q+D   G  + +  + AL  A +G   +  +    L    
Sbjct: 180 YGEGDLPVGYMPNLKRFTLLQLD---GAWTRDKFLEALNLAIKGAEFVYQKARDALKSKY 236

Query: 544 LQLGE 548
           + + E
Sbjct: 237 MTIAE 241



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 14/163 (8%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78
           I   +DG+ + +YG T  +A V   R +       P    + V Y    ++         
Sbjct: 32  IVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKD-----E 86

Query: 79  RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           R+   PT  EI IS+++  ++ P  +  +  ++   V I ++Q D   S  V S+ AAS 
Sbjct: 87  RKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQAD--GSTRVASLTAASL 144

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
           AL  +G+     V+G  V  ++G  VL+    EDQ G  DL V
Sbjct: 145 ALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPV 187


>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
 gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
           DSM 5348]
          Length = 245

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 15/237 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD   R+DGR  + +R +  ++G+L+   GSSL   G+T+ I+    G RE   +   
Sbjct: 9   LILDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTK-IIAAVYGPRE--MHPRH 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           L+   R    + Y+  P +T E  +   PSRREI   ++ R A+   +    QFP + + 
Sbjct: 66  LALPNRATLRVRYHMTPFSTDE-RKSPVPSRREIELSKVIREALESSI-LVEQFPRSSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A++  +SLA++DAG+P+   +A +A+G      D +++ D++  ED
Sbjct: 124 VFMEVIQADAGTRLASLMAASLAVVDAGIPVKDVIAAVAVGKA----DGVVVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G  D  VA   S   IT +Q++   G +++      L+ A +G   I N   +VL
Sbjct: 180 MWGEADMPVAMLPSLGQITLIQLN---GNMTQQEFKQGLELAYKGISTIYNLEKEVL 233



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ L   G T ++A V   R +       P    L V Y    ++
Sbjct: 26  RPMKMEIG-VLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L  +  ++   V + V+Q D  +   
Sbjct: 85  TDE------RKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQAD--AGTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + S++AAS A++ +G+P +  +    V   +G  VL+    ED  G  D+ V+
Sbjct: 137 LASLMAASLAVVDAGIPVKDVIAAVAVGKADGVVVLDLNEPEDMWGEADMPVA 189


>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
 gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
 gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Udp And Gmp
 gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Adp In Double Conformation
 gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With A Single Stranded 10-Mer Poly(A) Rna
 gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Cdp
 gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
           GE5]
          Length = 249

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+  +GS+ +I      I+    G RE   +   L    R 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNANGSA-YIEWGKNKIIAAVYGPRE--LHPKHLQRPDRA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR I   ++ + A+ P L     FP T + +  E+ +
Sbjct: 74  ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVLQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   VA  A G + +G+   I+ D++ +ED+ G  D 
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G ++++  + A++ A +G   +  +  + L E  L++ +
Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + ++G+    +G+  ++A V   R L       P    L V Y    ++
Sbjct: 27  RPIKMEVG-VLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D  +   
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P    V       I G+ VL+   +ED  G  D+ V+
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190


>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
 gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
          Length = 250

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 10/190 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD   R DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +   
Sbjct: 14  LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKE--MHPRH 70

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           LS   R    + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + 
Sbjct: 71  LSLPDRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESAV-LVELFPRTAID 128

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  E 
Sbjct: 129 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETEA 184

Query: 485 HLGHMDFKVA 494
             G  D  +A
Sbjct: 185 MWGEADMPIA 194



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 31  RSIKIELG-VLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 89

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 90  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 141

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN 164
           +VS++AAS AL  +G+P    + G  V   +G  +L+
Sbjct: 142 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILD 178


>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
 gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
 gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
          Length = 250

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+  +GS+ +I      I+    G RE   +   L    R 
Sbjct: 17  RLDGRKKYELRPIKMKVGVLKNANGSA-YIEWGKNKIIAAVYGPRE--IHPKHLQRPDRA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR I   ++ R A+ P L     FP T + +  E+ +
Sbjct: 74  ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIRGALEPAL-ILEMFPRTAIDVFIEVLQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   VA  + G + +G+   I+ D++ +ED+ G  D 
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACSAGKI-EGE---IVLDLNKEEDNYGEADV 187

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E  L++ +
Sbjct: 188 PVAIMPIKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + ++G+    +G+  ++A V   R +       P    L V Y    ++
Sbjct: 27  RPIKMKVG-VLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D  +   
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P    V       I G+ VL+   +ED  G  D+ V+
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVA 190


>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
 gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
          Length = 243

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 105/190 (55%), Gaps = 10/190 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD  +R+DGR  + +R +  +VG+L+   GS++   G+T+ I+    G RE   +   
Sbjct: 9   LILDNGLRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTK-ILAAVYGPRE--MHPRH 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           L+   R    + Y+  P +T E  +  APSRREI   ++ R A+   +    QFP T + 
Sbjct: 66  LALPNRAVLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESQI-LVEQFPRTSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A++  +SLA++DAG+P+   +A +A+G      D +++ D++  ED
Sbjct: 124 VFMEVLQADAGTRLASLMAASLAVVDAGIPVRDLIAAVAVGKA----DGVVVLDLNEPED 179

Query: 485 HLGHMDFKVA 494
             G  D  VA
Sbjct: 180 MWGEADMPVA 189



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ +   G T +LA V   R +       P    L V Y    ++
Sbjct: 26  RPMKMEVG-VLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L  +  +    V + V+Q D  +   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQAD--AGTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + S++AAS A++ +G+P    +    V   +G  VL+    ED  G  D+ V+
Sbjct: 137 LASLMAASLAVVDAGIPVRDLIAAVAVGKADGVVVLDLNEPEDMWGEADMPVA 189


>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
 gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
 gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 249

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+  +GS+ +I      I+    G RE   +   L    R 
Sbjct: 17  RIDGRKKYELRPIKMKVGVLKNANGSA-YIEWGRNKIIAAVYGPRE--LHSKHLQRPDRA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR I   ++ + A+ P L     FP T + +  E+ +
Sbjct: 74  ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTSIDVFIEVLQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   VA  A G + +G+   I+ D++ +ED+ G  D 
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E  L++ +
Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + ++G+    +G   ++A V   R L       P    L V Y    ++
Sbjct: 27  RPIKMKVG-VLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D  +   
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P    V       I G+ VL+   +ED  G  D+ V+
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190


>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
 gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
 gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
           kodakarensis KOD1]
          Length = 249

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+   GS+ ++      ++    G RE   +   L    R 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSA-YVEWGKNKVLAAVYGPRE--IHPKHLQRPDRA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR +   ++ R A+ P L     FP T + +  EI +
Sbjct: 74  ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-LLHMFPRTAIDVFIEILQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   VA  A G + DG+   I+ D++ +ED+ G  D 
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDLVAACAAGKI-DGE---IVLDLNKEEDNYGEADV 187

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G ++++  + A++ A +G   +  +  + L E  L++ +
Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 19/212 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  VLA V   R +       P    L V Y    ++
Sbjct: 27  RPIKMEVG-VLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  L     +    V I ++Q D  +   
Sbjct: 86  VEE------RKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184
           V  + AAS AL  +G+P +  V       I+G+ VL+   +ED  G  D+ V+    ++ 
Sbjct: 138 VAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
           + +++++   L++D  L+A+       K V +
Sbjct: 198 ITLLQMDG-YLTKDEFLEAVRLAIKGAKAVYQ 228


>gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
 gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
          Length = 248

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+   GS+ +I      I+    G RE           QR 
Sbjct: 16  RIDGRKKYELRKIHMEVGVLKNADGSA-YIEWGKNKILAAVYGPREIHP-----KHLQRP 69

Query: 373 D---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSE 428
           D     + YN  P +  E  + G P RR +   ++ R A+ P L     FP T+  +  E
Sbjct: 70  DTAVLRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-ILEMFPRTVVDVFIE 127

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++D  + +A +  +SLAL DAGVP+   VA  A G + DG+   I+ D++ DED+ G 
Sbjct: 128 VLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKI-DGE---IVLDLNKDEDNYGE 183

Query: 489 MDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E  L++
Sbjct: 184 ADVPVAIMPLKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKI 240

Query: 547 GE 548
            +
Sbjct: 241 AQ 242



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R + +E G + + +DG+    +G+  +LA V   R +        D   L V Y    ++
Sbjct: 26  RKIHMEVG-VLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    V I V+Q D  +   
Sbjct: 85  VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQAD--AGTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P    V       I+G+ VL+   DED  G  D+ V+
Sbjct: 137 VAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVA 189


>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
 gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
 gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 249

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+   GS+ ++      I+    G RE   +   L    R 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSA-YVEWGKNKILAAVYGPRE--IHPKHLQRPDRA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR +   ++ R A+ P L     FP T + I  E+ +
Sbjct: 74  ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-ILEMFPRTAIDIFIEVLQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   VA  A G + +G+   I+ D++ +ED+ G  D 
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G ++ +  + A++ A +G   +  +  + L E  L++ E
Sbjct: 188 PVAIMPLKNDITLLQMD---GYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAE 243



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  +LA V   R +       P    L V Y    ++
Sbjct: 27  RPIKMEVG-VLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    + I V+Q D  +   
Sbjct: 86  VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P    V       I G+ VL+   +ED  G  D+ V+
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190


>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
 gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
          Length = 245

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 110/204 (53%), Gaps = 12/204 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++LD   R+DGR  + +R +  ++G+L+   GSSL   G+T+ I+    G RE   +   
Sbjct: 9   LILDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTK-IIAAVYGPRE--MHPRH 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           L+   R    + Y+  P +T E  +   PSRREI   ++ R A+   +    QFP + + 
Sbjct: 66  LALPNRATLRVRYHMTPFSTDE-RKSPVPSRREIELSKVIREALESSV-LVEQFPRSSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A++  +SLA++DAG+P+   +A +A+G      D +++ D++  ED
Sbjct: 124 VFMEVIQADAGTRLASLMAASLAIIDAGIPVRDAIAAVAVGKA----DGVVVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDS--GITAMQMD 506
             G  D  VA   S   IT +Q++
Sbjct: 180 MWGEADMPVAMMPSLGQITLIQLN 203



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ L   G T ++A V   R +       P    L V Y    ++
Sbjct: 26  RPMKMEIG-VLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L  +  ++   V + V+Q D  +   
Sbjct: 85  TDE------RKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQAD--AGTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + S++AAS A++ +G+P    +    V   +G  VL+    ED  G  D+ V+
Sbjct: 137 LASLMAASLAIIDAGIPVRDAIAAVAVGKADGVVVLDLNEPEDMWGEADMPVA 189


>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
 gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
 gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
           protein (Rrp41p) [Thermococcus gammatolerans EJ3]
          Length = 249

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 21/242 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+   GS+ +I      I+    G RE           QR 
Sbjct: 17  RIDGRRKYELRKIHMEVGVLKNADGSA-YIEWGKNKILAAVYGPREIHP-----KHLQRP 70

Query: 373 D---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSE 428
           D     + YN  P +  E  + G P RR +   ++ R A+ P L     FP T+  +  E
Sbjct: 71  DTAVLRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAL-ILEMFPRTVVDVFIE 128

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++D  + +A +  +SLAL DAGVP+   VA  A G + DG+   I+ D++ DED+ G 
Sbjct: 129 VLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKI-DGE---IVLDLNKDEDNYGE 184

Query: 489 MDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E  L++
Sbjct: 185 ADVPVAIMPLKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKI 241

Query: 547 GE 548
            +
Sbjct: 242 AQ 243



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R + +E G + + +DG+    +G+  +LA V   R +        D   L V Y    ++
Sbjct: 27  RKIHMEVG-VLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    V I V+Q D  +   
Sbjct: 86  VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P    V       I+G+ VL+   DED  G  D+ V+
Sbjct: 138 VAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVA 190


>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
          Length = 242

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+ GR  E +R I  +VGLL+R  GS  F  G+ +A+  V  G RE   +       +R 
Sbjct: 14  RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAV-YGPRE--MHPRHFQNAKRA 70

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN  P +  +  R G P RR      ++R+A+ PV+ +       + +  E+ +S
Sbjct: 71  VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  +  A +  +S+AL DAG+P+   V+ +A+G + DG+   ++ D+   ED+ G  D  
Sbjct: 130 DAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADVP 185

Query: 493 VA--GTDSGITAMQMDMKI 509
           +A     + IT +QMD ++
Sbjct: 186 IAMIARTNTITLLQMDGRL 204



 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 21/213 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           RP+K+E G + R +DG+     G    LA V   R +  +  Q+     V Y+       
Sbjct: 24  RPIKIEVGLLKR-ADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVKYRYNMAPFS 82

Query: 72  ----KIPGGYLRRESRPTENEILISRMIDRSI-RPLFSKCYKNETQVIINVMQHDLESSP 126
               K PG     + R  E  ++  + +D  I R L+ K      +V + V+Q D  +  
Sbjct: 83  VDDRKRPGP----DRRSQEISMVSRKALDPVILRELYPKT---AIEVYVEVLQSD--AGT 133

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQD 183
               + AAS AL  +G+P    V    +  I+G+ VL+    ED  G  D+ ++     +
Sbjct: 134 RTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADVPIAMIARTN 193

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
            + +++++  +L ++     +    N C+ + E
Sbjct: 194 TITLLQMDG-RLKKEEFERGLKLAMNGCRKIYE 225


>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
 gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
          Length = 246

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+   GS+ ++      I+    G RE   +   L    R 
Sbjct: 16  RVDGRKKYELRKIKMEVGVLKSADGSA-YVEWGKNKIMAAVYGPRE--IHPKHLQKPDRA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR +   ++ R A+ P +     FP T + I  E+ +
Sbjct: 73  ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAV-ILELFPRTSIDIFIEVLQ 130

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   VA  A G + DG+   I+ D++ +ED+ G  D 
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDLVAACAAGKI-DGE---IVLDLNKEEDNYGEADV 186

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E  L++ E
Sbjct: 187 PVAIMPIKNDITLLQMD---GYLTKEEFLEAVKLAIKGAKAVYQKQREALREKYLKIVE 242



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+    +G+  ++A V   R +       P    L V Y    ++
Sbjct: 26  RKIKMEVG-VLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILRVRYNMAPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    + I V+Q D  +   
Sbjct: 85  VEE------RKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQAD--AGTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P +  V       I+G+ VL+   +ED  G  D+ V+
Sbjct: 137 VAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVA 189


>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
 gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
          Length = 240

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 9/237 (3%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I   VG+L+   GS+    G T+ I+    G RE   Y   L+   R
Sbjct: 12  LRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTK-IIAAVYGPRE--VYPRHLALPDR 68

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 Y+  P +T +  +  APSRREI   ++ R A+  ++        T+ +  E+ +
Sbjct: 69  ALIRCRYHMAPFSTSD-RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQ 127

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +    +  +SLAL DAG+P+   VAG+A G V    D +++ DI   ED  G  D 
Sbjct: 128 ADGGTRTTGLTAASLALADAGIPMRDLVAGVAAGKV----DGVLVLDIDEVEDEYGEADM 183

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            + G  +GI  + +    G  +      AL  AKRG   I   M + L +  L++ E
Sbjct: 184 PI-GYAAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETLHKKYLKVLE 239



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 19/184 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + +DG+    YG T ++A V   R +       P    +   Y    ++
Sbjct: 23  RPIKMDVG-VLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALIRCRYHMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127
                    R+   P+  EI +S++I  ++  L FS+ Y   T  V I V+Q D      
Sbjct: 82  TSD------RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD--GGTR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL---FVSGTQD 183
              + AAS AL  +G+P    V G     ++G  VL+   ++++ G  D+   + +G  +
Sbjct: 134 TTGLTAASLALADAGIPMRDLVAGVAAGKVDGVLVLDIDEVEDEYGEADMPIGYAAGIDE 193

Query: 184 AVLM 187
            VL+
Sbjct: 194 IVLL 197


>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
 gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
          Length = 246

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 18/227 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGRD + +R I  + G+L+R  GS  +I      IV    G R  E +   L    R 
Sbjct: 14  RLDGRDFDELRPIKIEAGVLRRADGSC-YIEMGKNKIVAAVYGPR--EVHPRHLQDPSRA 70

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
                YN  P +  E  + G P RR I   +++R A+ PV+ +   FP + + I  E+ +
Sbjct: 71  IIRYRYNMAPFSVEERKKPG-PDRRSIEISKVSREALEPVILKEL-FPRSGIDIFVEVLQ 128

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  +  A +  +S+AL+DAGV +   +  +A+  V +G+   I+ D   +ED+ G  D 
Sbjct: 129 ADAGTRTACLNAASVALIDAGVAMRGMITAVAVAKV-EGE---IVLDPMKEEDNYGEADV 184

Query: 492 KVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             A     G    I  +QMD   G +S   M  AL+ AK+G + I N
Sbjct: 185 PFAFLIRNGKIESIALLQMD---GKMSAEEMKKALELAKKGAMQIYN 228



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 95/199 (47%), Gaps = 23/199 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E G + R++DG+     G+  ++A V     V+ R L+D      +   Y    +
Sbjct: 24  RPIKIEAG-VLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAI-IRYRYNMAPF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSP 126
           +V +      R++  P    I IS++   ++ P+  K    ++   + + V+Q D  +  
Sbjct: 82  SVEE------RKKPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQAD--AGT 133

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD-----LFVSG 180
               + AAS AL+ +G+   G +    V  + G+ VL+P  +ED  G  D     L  +G
Sbjct: 134 RTACLNAASVALIDAGVAMRGMITAVAVAKVEGEIVLDPMKEEDNYGEADVPFAFLIRNG 193

Query: 181 TQDAVLMVELEANQLSEDV 199
             +++ +++++    +E++
Sbjct: 194 KIESIALLQMDGKMSAEEM 212


>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
 gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
 gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
          Length = 255

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 11/236 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  E +R I  +VG+L    GS+L   G T+ I  V  G RE   +   ++   R
Sbjct: 24  IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAV-YGPRE--AHPRHVALPDR 80

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 Y+  P +T E  +  AP+RRE+   ++ R A+  V+  +  +P T + +  E+ 
Sbjct: 81  AIIRCRYHMAPFSTAE-RKTPAPTRREVELSKVIREALEAVV-ISELYPRTAIDVYMEVL 138

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           +SDG +  A +  +SLAL DAG+ +   VAG+A+G V    D +++ DI   ED+    D
Sbjct: 139 QSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKV----DGVLVLDIDEIEDNYAEAD 194

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             VA   S    + + +  G ++ +  V AL+ A++G   I N   + L +  +++
Sbjct: 195 MPVAMAPSLDKVLLLQLN-GVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEV 249



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++E G +   +DG+ L  YG T V+A V   R         P    +   Y    ++
Sbjct: 35  RPIRMEVG-VLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAPFS 93

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPH 127
             +      R+   PT  E+ +S++I  ++   + S+ Y +    V + V+Q D      
Sbjct: 94  TAE------RKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSD--GGTR 145

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
             ++ AAS AL  +G+     V G  V  ++G  VL+    ED   +  + + ++ + D 
Sbjct: 146 TAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPSLDK 205

Query: 185 VLMVEL 190
           VL+++L
Sbjct: 206 VLLLQL 211


>gi|207093020|ref|ZP_03240807.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 102

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E++YA GKIPGG+++RE
Sbjct: 19  QVAKQATSSLLYRLGKTIILASVCVERE-PVSEDFLPLVVQFLEKSYAAGKIPGGFVKRE 77

Query: 82  SRPTENEILISRMIDRSIRPLFSK 105
            R  + EIL SR+IDR++RPLF K
Sbjct: 78  GRAQDFEILTSRLIDRTLRPLFPK 101


>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
 gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
          Length = 240

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 9/234 (3%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I   VG+L+   GS+    G T+ I  V  G RE   Y   L+   R
Sbjct: 12  LRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAV-YGPRE--VYPRHLALPDR 68

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 Y+  P +T +  +  APSRREI   ++ R A+  ++        T+ +  E+ +
Sbjct: 69  ALIRCRYHMAPFSTSD-RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQ 127

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +    +  +SLAL DAG+P+   VAG+A+G V    D +++ DI   ED  G  D 
Sbjct: 128 ADGGTRTTGLTAASLALADAGIPMRDLVAGVAVGKV----DGVLVLDIDEVEDEYGEADM 183

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            + G  +GI  + +    G ++      AL  AK G   I   M + L +  L+
Sbjct: 184 PI-GYAAGIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETLHKKYLK 236



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 19/184 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + +DG+    YG T V+A V   R +       P    +   Y    ++
Sbjct: 23  RPIKMDVG-VLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALIRCRYHMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127
                    R+   P+  EI +S++I  ++  L FS+ Y   T  V I V+Q D      
Sbjct: 82  TSD------RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD--GGTR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL---FVSGTQD 183
              + AAS AL  +G+P    V G  V  ++G  VL+   ++++ G  D+   + +G  +
Sbjct: 134 TTGLTAASLALADAGIPMRDLVAGVAVGKVDGVLVLDIDEVEDEYGEADMPIGYAAGIDE 193

Query: 184 AVLM 187
            VL+
Sbjct: 194 IVLL 197


>gi|289524415|ref|ZP_06441269.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502345|gb|EFD23509.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 122

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 3/121 (2%)

Query: 268 IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           I  +K+K+   F   +    E  + +V      K +R+++LD+ +R DGR  + +R IS 
Sbjct: 3   IKAIKEKVWEKFKDTYPE-QESYVSNVITKYVKKAMRSLILDEGLRADGRAMDELRPISC 61

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQYVDSLSGTQ-RNDFMMHYNFLPCAT 385
           +V LL R HGS++F RG+TQA+VV TLG   EDEQ +D L   +    FM+HYNF P + 
Sbjct: 62  EVSLLPRAHGSAVFTRGETQAMVVTTLGMFGEDEQILDGLKLDEPPKRFMLHYNFPPFSV 121

Query: 386 G 386
           G
Sbjct: 122 G 122


>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
 gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
          Length = 249

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+   GS+ +I      I+    G +E   +   L    R 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSA-YIEWGKNKIIAAVYGPKE--LHPKHLQRPDRA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR I   ++ + A+ P L     FP T + +  E+ +
Sbjct: 74  ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVLQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   VA  A G + +G+   I+ D++ +ED+ G  D 
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G +++   + A++ A +G   +  +  + L +  L++ +
Sbjct: 188 PVAIMPLRNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKDKYLKIAQ 243



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  ++A V   + L       P    L V Y    ++
Sbjct: 27  RPIKMEVG-VLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D  +   
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQAD--AGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P    V       I G+ VL+   +ED  G  D+ V+
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVA 190


>gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
 gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
          Length = 242

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 20/236 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +  +VG+L    GS++   G T+ +  V  G RE  Q    L    R 
Sbjct: 15  RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAV-YGPREPLQKYTVLP--DRA 71

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + Y+  P +T E  +   P+RRE+   ++ R A+ PV+  T  FP T + +  E+ +
Sbjct: 72  SLFVRYHMAPFSTEE-RKSPVPTRREVEISKVLREALEPVV-ITELFPRTVIEVYVEVLQ 129

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           SDG +  A+   +SLAL DAG+P+   VAG+A+G V    D +++ D++  ED+ G  D 
Sbjct: 130 SDGGTRTASATAASLALADAGIPMRALVAGVAIGKV----DNVVVLDLNEPEDNFGEADM 185

Query: 492 K-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             VA  D G+  +    ++ G      VM +++ ++G    L  +S+++ + +  L
Sbjct: 186 PVVAAPDLGLITL---FQLNG------VMTVEETQKGLDMALKAISELVEKEKQTL 232



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 22/190 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ ++ G +   +DG+ + +YG+T VLA V   R         P    L V Y    ++
Sbjct: 25  RPVDMKVG-VLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLFVRYHMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP-----LFSKCYKNETQVIINVMQHDLES 124
             +      R+   PT  E+ IS+++  ++ P     LF +      +V + V+Q D   
Sbjct: 84  TEE------RKSPVPTRREVEISKVLREALEPVVITELFPRTV---IEVYVEVLQSD--G 132

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
                S  AAS AL  +G+P    V G  +  ++   VL+    ED  G  D+ V    D
Sbjct: 133 GTRTASATAASLALADAGIPMRALVAGVAIGKVDNVVVLDLNEPEDNFGEADMPVVAAPD 192

Query: 184 AVLMVELEAN 193
             L+   + N
Sbjct: 193 LGLITLFQLN 202


>gi|153844108|ref|ZP_01993625.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|149745259|gb|EDM56510.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
          Length = 162

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 81/135 (60%)

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+ +++++ +  L  +  I EK  R  +I ++  ++     ++    +  EI ++F D
Sbjct: 28  TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 87

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+D R+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 88  LEKTVVRRSIIAGNPRIDSREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 147

Query: 358 EDEQYVDSLSGTQRN 372
            D Q +D L+G +++
Sbjct: 148 RDAQIIDELTGERKD 162


>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
 gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
          Length = 249

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 10/182 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +  +VG+L+  +GS+L   G T+ +  V  G RE       ++   R 
Sbjct: 20  RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAV-FGPRE--ALPRHIALPDRA 76

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + Y+  P +T E  +  APSRREI   ++ R A+  V+  + QFP T + I  E+ +
Sbjct: 77  TLRVRYHMAPFSTSE-RKSPAPSRREIELSKVIREALESVV-FSEQFPRTSIDIFIEVLQ 134

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +  A +  +S+AL DAG+P+   V G+A+G ++      ++ DIS  ED  G  D 
Sbjct: 135 ADGGTRTAGLTAASVALADAGIPMKDLVIGVAVGKIEGN----LVLDISELEDEYGEADL 190

Query: 492 KV 493
            +
Sbjct: 191 PL 192



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 16/170 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + ++G+ L  YG T VLA V   R         P    L V Y    ++
Sbjct: 30  RPVKIKVG-VLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLRVRYHMAPFS 88

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCY-KNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++  + FS+ + +    + I V+Q D      
Sbjct: 89  TSE------RKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQAD--GGTR 140

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL 176
              + AAS AL  +G+P +  V+G  V  I G  VL+   L+++ G  DL
Sbjct: 141 TAGLTAASVALADAGIPMKDLVIGVAVGKIEGNLVLDISELEDEYGEADL 190


>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
          Length = 247

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 12/200 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R I  +VG+L+R  GS     GD + I  V  G RE   +       +  
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAV-YGPRE--MHPRHAQDAKMA 69

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
                YN  P +T +  R G P RR +   ++ R A  PV+ +   +P T + +  E+ +
Sbjct: 70  VVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMREL-YPKTGIEVYVELLQ 127

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           SD  +  A +  +S+AL DAG+P+   V+ IA+G  K G + ++  D++  ED+ G  D 
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDLVSSIAVG--KIGGEMVL--DLNAAEDNNGEADM 183

Query: 492 KVA--GTDSGITAMQMDMKI 509
            +A     + ITA+QMD ++
Sbjct: 184 PIAMIARTNTITALQMDGRL 203



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 12/171 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           RP+K+E G + +++DG+     G+  V+A V   R +  +  QD     V ++   Y + 
Sbjct: 23  RPIKIEVG-VLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVKFR---YNMA 78

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129
                  +R   P    + IS++   +  P +  + Y K   +V + ++Q D  +     
Sbjct: 79  PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQSD--AGTRTA 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
            + AAS AL  +G+P +  V    V  I G+ VL+    ED  G  D+ ++
Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIA 186


>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
 gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
          Length = 333

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 127/255 (49%), Gaps = 26/255 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R +   +G+L R  GS     G+ + I  V  G RE           QR
Sbjct: 14  LRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAV-YGPRELHPR-----RMQR 67

Query: 372 ND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
            D       YN    +  +  R G PSRR     +++  A  PV+  T  +P T + + S
Sbjct: 68  PDAAVIRYKYNMASFSVEDRQRPG-PSRRSSEISKVSSEAFEPVV-MTQFYPNTVIDVFS 125

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E+D  +  A +  ++LAL+DAG+P+   V+  A+G V    D  ++ D++  ED+ G
Sbjct: 126 EVLEADAGTRTAAINAATLALIDAGIPLKSLVSACAVGKV----DGQLVLDLNKKEDNEG 181

Query: 488 HMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL-Q 545
             D  VA T  G IT +QMD   G ++E+ +  A++  K G      ++ ++  E+ L +
Sbjct: 182 EADLPVAITQDGEITLLQMD---GHLTEDEIKQAMELVKNG----CQQIQQIQREALLKK 234

Query: 546 LGEFT-PRVEIMAIP 559
            G++     EI ++P
Sbjct: 235 FGQYEGADTEIQSVP 249



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 18/209 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K++ G ++R +DG+    +G   +++ V   R L   +    D   +   Y   +++
Sbjct: 25  RPMKVDIGVLSR-ADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVIRYKYNMASFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNETQVIINVMQHDLESSP-- 126
           V        R+   P+     IS++   +  P+  ++ Y N    +I+V    LE+    
Sbjct: 84  VED------RQRPGPSRRSSEISKVSSEAFEPVVMTQFYPN---TVIDVFSEVLEADAGT 134

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
              ++ AA+ AL+ +G+P +  V    V  ++GQ VL+    ED +G  DL V+ TQD  
Sbjct: 135 RTAAINAATLALIDAGIPLKSLVSACAVGKVDGQLVLDLNKKEDNEGEADLPVAITQDGE 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPV 214
           + +      L+ED +  A+    N C+ +
Sbjct: 195 ITLLQMDGHLTEDEIKQAMELVKNGCQQI 223


>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
          Length = 242

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 10/199 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+ GR  E +R I   VG+L+R  GS  F  G+ +AI  V  G RE   +       +  
Sbjct: 14  RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAV-YGPRE--MHPRHFQNAKMA 70

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN  P +  +  R G P RR      ++R+A+ PV+ +       + +  E+ +S
Sbjct: 71  VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  +  A +  +S+AL DAG+P+   V+ +A+G + DG+   ++ D+   ED+ G  D  
Sbjct: 130 DAGTRTAGINAASVALADAGIPMKDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADMP 185

Query: 493 VA--GTDSGITAMQMDMKI 509
           +A     + IT +QMD ++
Sbjct: 186 IAMVARTNTITLLQMDGRL 204


>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
          Length = 247

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R I  +VG+L+R  GS     GD + I  V  G RE   +       +  
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAV-YGPRE--MHPRHAQDAKMA 69

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN  P +T +  R G P RR +   ++ R A  PV+ +       + +  E+ +S
Sbjct: 70  VVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  +  A +  +S+AL DAG+P+   V+ IA+G + +G+   ++ D++  ED+ G  D  
Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKI-NGE---MVLDLNAAEDNNGEADMP 184

Query: 493 VA--GTDSGITAMQMDMKI 509
           +A     + ITA+QMD ++
Sbjct: 185 IAMIARTNTITALQMDGRL 203



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           RP+K+E G + +++DG+     G+  V+A V   R +  +  QD     V ++   Y + 
Sbjct: 23  RPIKIEVG-VLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVKFR---YNMA 78

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129
                  +R   P    + IS++   +  P +  + Y K   +V + ++Q D  +     
Sbjct: 79  PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSD--AGTRTA 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
            + AAS AL  +G+P +  V    V  ING+ VL+    ED  G  D+ ++
Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKINGEMVLDLNAAEDNNGEADMPIA 186


>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
 gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
          Length = 242

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 10/199 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+ GR  E +R I   VG+L+R  GS  F  GD +A+  V  G RE   +       +  
Sbjct: 14  RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAV-YGPRE--MHPRHFQNAKMA 70

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN  P +  +  R G P RR      ++R+A+ PV+ +       + +  E+ +S
Sbjct: 71  VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  +  A +  +S+AL DAG+P+   V+ +A+G + DG+   ++ D+   ED+ G  D  
Sbjct: 130 DAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADMP 185

Query: 493 VA--GTDSGITAMQMDMKI 509
           +A     + IT +QMD ++
Sbjct: 186 IAMIARTNTITLLQMDGRL 204


>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 231

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 15/223 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R +  + G+L+R  GSS    G  + I+V   G RE +  +  L    R
Sbjct: 7   VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNK-ILVAVYGPREAQ--IRKLQRPDR 63

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN  P +  E  R G P RR +   ++   A+ P L    +FP + + +  E+ 
Sbjct: 64  AVIRCRYNMAPFSVEERKRPG-PDRRSVEISKITAEALRPAL-ILEKFPRSVIDVFIEVL 121

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E++G +  A +  +S+AL DAG+P+   V   A G V D     ++ D+S +ED  G  D
Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVNDQ----VVLDLSEEEDKAGQAD 177

Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             VA       IT +Q D   G +S++    AL  A  G L I
Sbjct: 178 VPVAILPRTREITLLQSD---GNLSDDEFERALDLAVEGCLRI 217



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           RPL++E G I  ++DG+    +G   +L  V   R  +       D   +   Y    ++
Sbjct: 18  RPLRIEAG-ILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFS 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++   ++RP  +  K  ++   V I V++   E    
Sbjct: 77  VEE------RKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEA--EGGTR 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
              + AAS AL  +G+P    VV      +N Q VL+   +ED+ G  D+ V+
Sbjct: 129 CAGITAASVALADAGIPMRDMVVACAAGKVNDQVVLDLSEEEDKAGQADVPVA 181


>gi|151944721|gb|EDN62980.1| RNA-dependent ATPase/ATP-dependent RNA helicase [Saccharomyces
           cerevisiae YJM789]
          Length = 1145

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647
           + KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLV
Sbjct: 150 STKIPAKIEAKIEEEAQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           HIS++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 210 HISEMSEQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
 gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
          Length = 242

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 19/201 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSG 368
           R DGR  E +R I  +VG+L+   GS++   G T  ++    G RE     E+ VD    
Sbjct: 14  RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKT-VVLAAVYGPREVVPRHEEIVD---- 68

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
             R      Y  L  +T    +  APSRREI   ++ R A+ P +  ++ +P T + I  
Sbjct: 69  --RAVIRCRYRMLSFSTLGERKSPAPSRREIELSKVIREALEPAI-ISSMYPRTAIDIFV 125

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+  ++G +  A +  +SLAL DAG+P++  VA +A+G +    D +I+ D+   ED  G
Sbjct: 126 EVINANGGTRTAGITAASLALADAGIPLADLVAAVAVGKI----DGVIVLDLDELEDMYG 181

Query: 488 HMDFKVAGTDS--GITAMQMD 506
             D  +A   S   IT +Q++
Sbjct: 182 EADMPIAAMPSLNRITMLQLN 202



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 14/161 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYA 69
           RP+++E G + + +DG+ +   G+TVVLA V   R +    ++  D   +   Y+  +++
Sbjct: 24  RPIRMEVG-VLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIRCRYRMLSFS 82

Query: 70  -VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
            +G+      R+   P+  EI +S++I  ++ P         T + I V   +       
Sbjct: 83  TLGE------RKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVINANGGTRT 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169
             + AAS AL  +G+P    V    V  I+G  VL+  LDE
Sbjct: 137 AGITAASLALADAGIPLADLVAAVAVGKIDGVIVLD--LDE 175


>gi|259145919|emb|CAY79179.1| Prp22p [Saccharomyces cerevisiae EC1118]
          Length = 1145

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647
           + KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLV
Sbjct: 150 STKIPAKIEAKIEEEAQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           HIS++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 210 HISEMSEQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
 gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
          Length = 242

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 14/198 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED-EQYVDSLSGTQR 371
           R+DGR  E  R ++ QVG+L   +GS+L   G+T  ++    G RE   +Y+   +   +
Sbjct: 15  RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNT-VVLAAVYGPREPIPRYI---TVPDK 70

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEIT 430
               + Y+  P +T +  +  AP+RREI   ++ ++A+  V+    Q+P  T+ +  E+ 
Sbjct: 71  AVVRVRYHMAPFSTDD-RKNPAPTRREIEISKVVKQALETVV-FLEQYPKSTIDVFLEVL 128

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++DGS+ + ++  +SLAL DAG+P+   V G+++G + D     ++ D++  ED+ G  D
Sbjct: 129 QADGSTRVTSITAASLALADAGIPMRDLVVGVSVGKIND----TVIVDLNKLEDNYGDGD 184

Query: 491 FK--VAGTDSGITAMQMD 506
               +A   + +  MQ+D
Sbjct: 185 LPIAIAYRKNWVLLMQLD 202



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 18/187 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ ++ G +   ++G+ L  YG TVVLA V   R         P    + V Y    ++
Sbjct: 25  RPVTMQVG-VLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVRVRYHMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127
                    R+   PT  EI IS+++ +++  + F + Y   T  V + V+Q D   S  
Sbjct: 84  TDD------RKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQAD--GSTR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDA 184
           V S+ AAS AL  +G+P    VVG  V  IN   +++    ED    G L + ++  ++ 
Sbjct: 136 VTSITAASLALADAGIPMRDLVVGVSVGKINDTVIVDLNKLEDNYGDGDLPIAIAYRKNW 195

Query: 185 VLMVELE 191
           VL+++L+
Sbjct: 196 VLLMQLD 202


>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
 gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
          Length = 246

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 15/239 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  +VG+L+   GS+ +I      I+    G RE   +   L    R 
Sbjct: 16  RIDGRKKYELRPIKMEVGVLKNADGSA-YIEWGKNKILAAVYGPRE--IHPKHLQRPDRA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + YN  P +  E  + G P RR +   ++ R A+ P +     FP T + +  E+ +
Sbjct: 73  ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAI-ILELFPRTAIDVFIEVLQ 130

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  + +A +  +SLAL DAG+P+   V+  A G ++      I+ D++ +ED+ G  D 
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDLVSACAAGKIEGQ----IVLDLNKEEDNYGEADV 186

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            VA     + IT +QMD   G ++    + A++ A +G   +  +  + L E  +++ +
Sbjct: 187 PVAIMPIKNDITLLQMD---GYLTREEFLEAVRLAIKGAKAVYQKQREALKEKYIKIAQ 242



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  +LA V   R +       P    L V Y    ++
Sbjct: 26  RPIKMEVG-VLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    V I V+Q D  +   
Sbjct: 85  VEE------RKKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQAD--AGTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           V  + AAS AL  +G+P +  V       I GQ VL+   +ED  G  D+ V+
Sbjct: 137 VAGITAASLALADAGIPMKDLVSACAAGKIEGQIVLDLNKEEDNYGEADVPVA 189


>gi|6320850|ref|NP_010929.1| Prp22p [Saccharomyces cerevisiae S288c]
 gi|130830|sp|P24384|PRP22_YEAST RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP22
 gi|4234|emb|CAA41530.1| PRP22 [Saccharomyces cerevisiae]
 gi|603605|gb|AAB64546.1| Prp22p: pre-mRNA splicing factor RNA helicase [Saccharomyces
           cerevisiae]
 gi|207346029|gb|EDZ72649.1| YER013Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273758|gb|EEU08683.1| Prp22p [Saccharomyces cerevisiae JAY291]
 gi|285811636|tpg|DAA07664.1| TPA: Prp22p [Saccharomyces cerevisiae S288c]
          Length = 1145

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647
           + KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLV
Sbjct: 150 STKIPAKIEAKIEEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           HIS++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 210 HISEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|227517|prf||1705293A RNA helicase-like protein
          Length = 1144

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 4/109 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647
           + KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLV
Sbjct: 150 STKIPAKIEAKIEEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           HIS++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 210 HISEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
 gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
          Length = 246

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R +  +VG++    GS+L   G+T  I+    G RE  Q    L    + 
Sbjct: 15  RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNT-VILAAVYGPREVPQ--KHLELPDKA 71

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEITE 431
              + Y+ +P +T E  +   PSRREI   ++ R A+ PV+    +FP  T+ +  E+ +
Sbjct: 72  ILRVRYHMIPFSTSEGRKSPTPSRREIEISKVIRTALEPVV-ILERFPRTTIDVYIEVLQ 130

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DGS+ +  +  +SLAL DAG+P+   + G+++G V       I+ D++  ED  G  D 
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDLLVGVSVGKVSG----TIIVDLNQLEDQYGEGDM 186

Query: 492 KVA--GTDSGITAMQMD 506
            +A       IT MQ D
Sbjct: 187 PLAIMYGRGLITLMQAD 203



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++E G I+  ++G+ L  YG TV+LA V   R +       P    L V Y    ++
Sbjct: 25  RPVRMEVGVIS-NAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMIPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI IS++I  ++ P  +  +  +    V I V+Q D   S  
Sbjct: 84  TSE-----GRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQAD--GSTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           V  + AAS AL  +G+P    +VG  V  ++G  +++    EDQ
Sbjct: 137 VTGITAASLALADAGIPMRDLLVGVSVGKVSGTIIVDLNQLEDQ 180


>gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 181

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 24/190 (12%)

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           M++  ++E    +EG+IV +F  +++++VR  ++  + R+DGR  +TVR +    G+L R
Sbjct: 1   MIAQITAEDEEISEGKIVDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPR 60

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
           THGS++F RG+TQA+ V TLGT  D Q +D  +    N+  M  N+              
Sbjct: 61  THGSAIFTRGETQALAVATLGTERDAQIIDEFN----NNGKMIKNWFEWEKD-------- 108

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
           +R+EI           P L  T +    L+ + EI   +G   +  V GS+  L  A   
Sbjct: 109 NRKEI-----------PKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLR-AARE 156

Query: 455 ISKPVAGIAM 464
           +++P  G  +
Sbjct: 157 LNRPSYGFEI 166


>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
 gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
 gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
          Length = 246

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 14/245 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   VR DGR  + +R++   VG++    GS++   G T A+  V  G RE   +   L
Sbjct: 8   LLQNGVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +    Q+P + + +
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAI-VLEQYPRSRIDV 123

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             EI ++DGS+ +A++  +SLAL DAG+ + + +       + DG    ++ D++G ED 
Sbjct: 124 FVEILQADGSTRVASLTAASLALADAGIYM-RDLVVGVSVGLVDG---TVVLDLNGLEDQ 179

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  +    +    T +Q+D   G  + ++ + AL  A RG  ++       L    
Sbjct: 180 YGEGDLPLGYMPNLKRFTLLQLD---GAWTRDMFLQALNLAVRGAEYVYQIARDALKNKY 236

Query: 544 LQLGE 548
           + + E
Sbjct: 237 MSIAE 241



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+  G +   +DG+ + +YG T  +A V   R +       P    + V Y    ++
Sbjct: 24  REVKIAVG-VVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
                    R+   P+  EI IS+++  ++ P  +  +  ++   V + ++Q D   S  
Sbjct: 83  TKD-----ERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD--GSTR 135

Query: 128 VVSMVAASAALMLSGL 143
           V S+ AAS AL  +G+
Sbjct: 136 VASLTAASLALADAGI 151


>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
 gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
 gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
          Length = 244

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 12/197 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  +  R I  + G L+   GSS    GD + I+V   G R+   +   +S T   
Sbjct: 17  RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNK-ILVGVFGPRD--VHPKHMSDTDTG 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
              + Y+  P + GE  +  APSRREI   ++ + A+ P +    +FP T + +  E+ +
Sbjct: 74  ILRVRYHMEPFSVGE-RKNPAPSRREIEISKVIKEALEPAV-MLEKFPRTAVDVFIEVLQ 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +  A +  +S+AL DAG+P+   VA IA G V D     ++ D++ +ED  G  D 
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVAD----TVILDVNNEEDQAGQADM 187

Query: 492 KVAGTDS--GITAMQMD 506
            +    +   IT +Q+D
Sbjct: 188 PIGYMPNLEKITLLQLD 204



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 20/202 (9%)

Query: 25  RQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLR 79
           + +DG+    +G+  +L  V     V+ + + D  D   L V Y    ++VG+      R
Sbjct: 37  KNADGSSYIEFGDNKILVGVFGPRDVHPKHMSD-TDTGILRVRYHMEPFSVGE------R 89

Query: 80  RESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           +   P+  EI IS++I  ++ P  +  K  +    V I V+Q D        ++ AAS A
Sbjct: 90  KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD--GGTRCAALTAASVA 147

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDAVLMVELEANQ 194
           L  +G+P    V       +    +L+   +EDQ G  D+ +      + + +++L+   
Sbjct: 148 LADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPNLEKITLLQLDG-V 206

Query: 195 LSEDVVLDAIIFGHNECKPVIE 216
           L+ +     I  G + CK V E
Sbjct: 207 LTPEEYKKCIQVGVDGCKLVYE 228


>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
          Length = 245

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 10/199 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R I  +VG+L+R  GS     G+ + I  V  G RE   +       +  
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAV-YGPRE--MHPRHAQDAKMA 69

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN  P +T +  R G P RR +   ++ R A  PV+ +       + +  E+ +S
Sbjct: 70  VVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQS 128

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  +  A +  +S+AL DAG+P+   V+ IA+G  K G + ++  D++  ED+ G  D  
Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVG--KIGGEMVL--DLNAAEDNNGEADMP 184

Query: 493 VA--GTDSGITAMQMDMKI 509
           +A     + ITA+QMD ++
Sbjct: 185 IAMIARTNTITALQMDGRM 203



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           RP+K+E G + +++DG+     G   V+A V   R +  +  QD     V ++   Y + 
Sbjct: 23  RPIKIEVG-VLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVKFR---YNMA 78

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129
                  +R   P    + IS++   +  P +  + Y K    V + ++Q D  +     
Sbjct: 79  PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQSD--AGTRTA 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
            + AAS AL  +G+P +  V    V  I G+ VL+    ED  G  D+ ++
Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIA 186


>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
          Length = 258

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 18/243 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R I  +  +L+R  GS     G  + I  V  G RE   + + L    +
Sbjct: 16  LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAV-FGPRE--VHPEHLQDPSK 72

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN  P +  E  R G P RR I   ++++ A   V+ +   FP + + I  E+ 
Sbjct: 73  AIIRYRYNMAPFSVEERKRPG-PDRRSIEISKVSKEAFEAVIMKEL-FPRSAIDIFVEVL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++D  S  A +  +S+AL+DAGVP+   +  +A+G     D  ++L D   +ED+ G  D
Sbjct: 131 QADAGSRTACLNAASVALVDAGVPMKGMITSVAVG---KADGQLVL-DPMKEEDNFGEAD 186

Query: 491 FKVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
              A     G    I  +QMD   G ++ + +  A++ AK+G L I     + +    ++
Sbjct: 187 MPFAFLIRNGKIESIALLQMD---GRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIE 243

Query: 546 LGE 548
           +GE
Sbjct: 244 VGE 246



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 24/204 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E   + +++DG+     G+  V+A V     V+   L+D      +   Y    +
Sbjct: 27  RPIKIEAS-VLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAI-IRYRYNMAPF 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           +V +      R+   P    I IS++   +   +  K    ++   + + V+Q D  S  
Sbjct: 85  SVEE------RKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS-- 136

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD-----LFVSG 180
               + AAS AL+ +G+P +G +    V   +GQ VL+P  +ED  G  D     L  +G
Sbjct: 137 RTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNG 196

Query: 181 TQDAVLMVELEANQLSEDVVLDAI 204
             +++ +++++  +++ D V  AI
Sbjct: 197 KIESIALLQMDG-RMTRDEVKQAI 219


>gi|291532398|emb|CBL05511.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Megamonas hypermegale ART12/1]
          Length = 83

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           MI ++T   EV  +YKG+V ++M+FGAFV     ++GL HISQL+ ERV K  DVV  GD
Sbjct: 1   MINALTAEVEVGAVYKGKVTRIMNFGAFVEILPGKEGLCHISQLAKERVGKVEDVVNIGD 60

Query: 669 TVWVKLLDFDDRGKIKLSMKVV 690
            + VK+ + D +G++ LS KV+
Sbjct: 61  ELEVKVTEIDRQGRVNLSHKVL 82


>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
          Length = 242

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 10/199 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+ GR  E +R I  +VG+L+R  GS  F  G+ + I  V  G RE   +       +  
Sbjct: 14  RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGV-YGPRE--MHPRHFQNAKMA 70

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN  P +  +  R G P RR      ++R+A+ PV+ +       + +  E+ +S
Sbjct: 71  VVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  +  A +  +S+AL DAG+P+   V+ +A+G + DG+   ++ D+   ED+ G  D  
Sbjct: 130 DAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI-DGE---VVLDLDAKEDNFGEADMP 185

Query: 493 VA--GTDSGITAMQMDMKI 509
           +A     + IT +QMD ++
Sbjct: 186 IAMIARTNTITLLQMDGRL 204


>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
          Length = 247

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 10/199 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I  +VG+L+R  GS     G+ + I  V  G RE   +       +  
Sbjct: 13  RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAV-YGPRE--MHPRHAQDAKMA 69

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN  P +T +  R G P RR +   ++ R A  PV+ +       + +  E+ +S
Sbjct: 70  VIKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQS 128

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  +  A +  +S+AL DAG+P+   V+ IA+G + +G+   ++ D++  ED+ G  D  
Sbjct: 129 DAGTRTAGINAASIALADAGIPMKDLVSSIAVGKI-NGE---VVLDLNAAEDNNGEADMP 184

Query: 493 VA--GTDSGITAMQMDMKI 509
           +A     + ITA+QMD ++
Sbjct: 185 IAMIARTNTITALQMDGRM 203



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 12/171 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           RP+K+E G + +++DG+     G   V+A V   R +  +  QD     + ++   Y + 
Sbjct: 23  RPIKIEVG-VLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIKFR---YNMA 78

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPHVV 129
                  +R   P    + IS++   +  P +  + Y K   +V + ++Q D  +     
Sbjct: 79  PFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSD--AGTRTA 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
            + AAS AL  +G+P +  V    V  ING+ VL+    ED  G  D+ ++
Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKINGEVVLDLNAAEDNNGEADMPIA 186


>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
 gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
          Length = 246

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 11/197 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R +  +VG+++   GS+L   G+T  I+    G RE  Q    L    + 
Sbjct: 15  RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNT-VILAAVYGPREVPQ--KHLELPDKA 71

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEITE 431
              + Y+  P +T E  +   PSRREI   ++ R A+ PV+    +FP  T+ +  E+ +
Sbjct: 72  ILRVRYHMAPFSTSEGRKSPTPSRREIEISKVIRTALEPVV-ILERFPRTTIDVYIEVLQ 130

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DGS+ +  +  +SLAL DAG+P+   + G+++G V       I+ D++  ED  G  D 
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDLLVGVSIGKVSG----TIVVDLNQLEDQYGEGDM 186

Query: 492 KVA--GTDSGITAMQMD 506
            +A       IT MQ D
Sbjct: 187 PLAIMYGRGLITLMQAD 203



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++E G I + ++G+ L  YG TV+LA V   R +       P    L V Y    ++
Sbjct: 25  RPVRMEVGVI-KNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI IS++I  ++ P  +  +  +    V I V+Q D   S  
Sbjct: 84  TSE-----GRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQAD--GSTR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           V  + AAS AL  +G+P    +VG  +  ++G  V++    EDQ
Sbjct: 137 VTGITAASLALADAGIPMRDLLVGVSIGKVSGTIVVDLNQLEDQ 180


>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
 gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 240

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R +  + G+L+R  GSS    G  + I+V   G RE +  +  L    R
Sbjct: 16  VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNK-ILVAVYGPREAQ--IRKLQRPDR 72

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN  P +  E  R G P RR +   ++   A+ P L    +FP + + +  E+ 
Sbjct: 73  AVIRCRYNMAPFSVEERKRPG-PDRRSVEISKITAEALRPAL-ILEKFPRSVIDVFIEVL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E++G +  A +  +S+AL DAG+P+   V   A G V  GD  ++  D+S +ED  G  D
Sbjct: 131 EAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKV--GDQVVL--DLSEEEDKEGQAD 186

Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             VA       IT +Q D   G ++      AL  A  G L I
Sbjct: 187 VPVAILPRTREITLLQSD---GNLTPEEFERALDLAVEGCLRI 226



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           RPLK+E G I  ++DG+    +G   +L  V   R  +       D   +   Y    ++
Sbjct: 27  RPLKIEAG-ILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++   ++RP  +  K  ++   V I V++   E    
Sbjct: 86  VEE------RKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEA--EGGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
              + AAS AL  +G+P    VV      +  Q VL+   +ED +G  D+ V+
Sbjct: 138 CAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVA 190


>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
 gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
 gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
 gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
 gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
 gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
 gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
 gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
 gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
          Length = 258

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 18/243 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R I  +  +L+R  GS     G  + I  V  G RE   +   L    +
Sbjct: 16  LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAV-FGPRE--VHPRHLQDPSK 72

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN  P +  E  R G P RR I   ++++ A   V+ +   FP + + I  E+ 
Sbjct: 73  AIIRYRYNMAPFSVEERKRPG-PDRRSIEISKVSKEAFEAVIMKEL-FPRSAIDIFVEVL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++D  S  A +  +S+AL+DAGVP+   +  +A+G     D  ++L D   +ED+ G  D
Sbjct: 131 QADAGSRTACLNAASVALVDAGVPMKGMITSVAVG---KADGQLVL-DPMKEEDNFGEAD 186

Query: 491 FKVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
              A     G    I  +QMD   G ++ + +  A++ AK+G L I     + +    ++
Sbjct: 187 MPFAFLIRNGKIESIALLQMD---GRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIE 243

Query: 546 LGE 548
           +GE
Sbjct: 244 VGE 246



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 24/204 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E   + +++DG+     G+  V+A V     V+ R L+D      +   Y    +
Sbjct: 27  RPIKIEAS-VLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAI-IRYRYNMAPF 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           +V +      R+   P    I IS++   +   +  K    ++   + + V+Q D  S  
Sbjct: 85  SVEE------RKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS-- 136

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD-----LFVSG 180
               + AAS AL+ +G+P +G +    V   +GQ VL+P  +ED  G  D     L  +G
Sbjct: 137 RTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNG 196

Query: 181 TQDAVLMVELEANQLSEDVVLDAI 204
             +++ +++++  +++ D V  AI
Sbjct: 197 KIESIALLQMDG-RMTRDEVKQAI 219


>gi|213863109|ref|ZP_03386364.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 77

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLD 175
           V+  + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LD
Sbjct: 3   VVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 62

Query: 176 LFVSGTQDAVLMVE 189
           L V+GT+ AVLMVE
Sbjct: 63  LVVAGTEAAVLMVE 76


>gi|269863281|ref|XP_002651164.1| polyribonucleotide nucleotidyltransferase / polynucleotide
           adenylyltransferase [Enterocytozoon bieneusi H348]
 gi|220065021|gb|EED42891.1| polyribonucleotide nucleotidyltransferase / polynucleotide
           adenylyltransferase [Enterocytozoon bieneusi H348]
          Length = 100

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 57/85 (67%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  + +  IT    + KIY G+V  ++DFGAFV+    +D L+HIS LS  RV K +D+
Sbjct: 6   EAGLQRVLGITAEARLGKIYVGKVEGIVDFGAFVNILPGKDVLIHISMLSDARVEKVTDI 65

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           +KEG  V V +LD D+RG+IKLS+K
Sbjct: 66  LKEGQEVEVLVLDVDNRGRIKLSIK 90


>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
 gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
          Length = 254

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 14/233 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +M+D K R+DGR    +R I  + G+L+R  GS     G  + +  V  G RE   +   
Sbjct: 7   LMIDGK-RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAV-YGPRE--VHPRH 62

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L    R      YN    +  E  R G P RR I   +++R A+  V+ +       + I
Sbjct: 63  LQNASRAIVRYRYNMAAFSVEERKRPG-PDRRSIEISKVSREALESVVLEELYPRSAVDI 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             EI ++D  + +A +  +S+AL DAG+P+   V+  ++G + DG+   ++ D++ DED+
Sbjct: 122 FVEILQADAGTRVAGINAASVALADAGIPMRCLVSACSVGKI-DGE---VVLDLNKDEDN 177

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G  D  VA    G +T  QMD   G ++E     AL  A  G    L+EM K
Sbjct: 178 YGQADLPVAVNQFGEVTLCQMD---GHLTEEEFGKALDMAVDG-CKKLHEMQK 226



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 20/212 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K + G + +++DG+    +G   V+A V     V+ R L++      +   Y    +
Sbjct: 23  RPIKFKAG-VLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAI-VRYRYNMAAF 80

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCY-KNETQVIINVMQHDLESSP 126
           +V +      R+   P    I IS++   ++  +   + Y ++   + + ++Q D  +  
Sbjct: 81  SVEE------RKRPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQAD--AGT 132

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ-DA 184
            V  + AAS AL  +G+P    V    V  I+G+ VL+   DED  G  DL V+  Q   
Sbjct: 133 RVAGINAASVALADAGIPMRCLVSACSVGKIDGEVVLDLNKDEDNYGQADLPVAVNQFGE 192

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
           V + +++ + L+E+    A+    + CK + E
Sbjct: 193 VTLCQMDGH-LTEEEFGKALDMAVDGCKKLHE 223


>gi|190405574|gb|EDV08841.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1145

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLV 647
           + KI +   A+I    + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLV
Sbjct: 150 STKIPAKIEAKIGEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           HIS++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 210 HISEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
 gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
          Length = 253

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I  Q G+L+R  GS     G  + +  V  G RE   +   L      
Sbjct: 13  RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAV-YGPRE--VHPRHLQQASNA 69

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN    +  E  R G P RR I   +++R A+  V+ +       + I  EI ++
Sbjct: 70  IVRYRYNMASFSVEERKRPG-PDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQA 128

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           D  + +A +  +S+AL DAG+P+   V+  A+G     DD ++L D++ DED+ G  D  
Sbjct: 129 DAGTRVAGINAASVALADAGIPMKCLVSACAVG---KADDTLVL-DLNKDEDNYGQADLP 184

Query: 493 VAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG--RLHILNEMSKVLSESR 543
           +A    G IT  QMD   G ++ +    AL  A  G  +LH L + + V   +R
Sbjct: 185 IAMNQFGEITLCQMD---GHMTSDEFSTALNMAIEGCKKLHELQKQALVEKYAR 235



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 18/177 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K + G + +++DG+    +G   V+A V     V+ R L+   +   +   Y   ++
Sbjct: 23  RPIKFQAG-VLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAI-VRYRYNMASF 80

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSP 126
           +V +      R+   P    I IS++   ++   +  + Y ++   + + ++Q D  +  
Sbjct: 81  SVEE------RKRPGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQAD--AGT 132

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            V  + AAS AL  +G+P +  V    V   +   VL+   DED  G  DL ++  Q
Sbjct: 133 RVAGINAASVALADAGIPMKCLVSACAVGKADDTLVLDLNKDEDNYGQADLPIAMNQ 189


>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
 gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
          Length = 297

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 16/227 (7%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D+ +R+DGR  + +R +  ++G+L R  GS     G+ + +  V  G RE    +     
Sbjct: 11  DEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAV-YGPRE----LHPRRM 65

Query: 369 TQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIV 426
            + N+ ++ Y +   +     R+   PSRR     +++  A  PV+  T  +P   + + 
Sbjct: 66  QKPNEVLVRYKYNMASFSVEDRIRPGPSRRSTEISKVSGEAFEPVV-MTQYYPGAVIDVF 124

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           +E+ ++D  +  A +  ++LAL DAG+P+   V+  A+G V    D  ++ D++  ED+ 
Sbjct: 125 AEVLQADAGTRTAAINAATLALADAGIPMKGLVSACAVGKV----DGQLVLDLNKPEDNY 180

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           G  D  VA T  G IT +QMD   G ++   +   L+  K+G   I+
Sbjct: 181 GQADLPVAMTQDGEITLLQMD---GHLTPEELEEGLEMVKKGCQQII 224



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV----NYQERTYA 69
           RP+K+E G ++R +DG+    +G   VLA V   R L   +   P  V     Y   +++
Sbjct: 25  RPMKVEMGVLSR-ADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLVRYKYNMASFS 83

Query: 70  V-GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET--QVIINVMQHDLESSP 126
           V  +I  G  RR +        IS++   +  P+    Y       V   V+Q D  +  
Sbjct: 84  VEDRIRPGPSRRSTE-------ISKVSGEAFEPVVMTQYYPGAVIDVFAEVLQAD--AGT 134

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
              ++ AA+ AL  +G+P +G V    V  ++GQ VL+    ED  G  DL V+ TQD  
Sbjct: 135 RTAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNYGQADLPVAMTQDGE 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
           + +      L+ + + + +      C+ +IE
Sbjct: 195 ITLLQMDGHLTPEELEEGLEMVKKGCQQIIE 225


>gi|213422759|ref|ZP_03355805.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 52

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           V+P   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAG
Sbjct: 3   VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAG 52


>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
           3091]
 gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 232

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 18/235 (7%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M ++ +R DGR   T+R++  +VG+L    GS+ +I      I+V   G RE    + S 
Sbjct: 1   MTNEFIRKDGRAYNTLRNMKMEVGVLNNADGSA-YIECGNNKILVGVYGPRE----IHSK 55

Query: 367 SGTQRNDFMMH--YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             ++ +  ++   YN  P +  E  R G P+RR     +L   AI P +        ++ 
Sbjct: 56  KHSKPDGAVLRCKYNMAPFSVKERKRPG-PNRRSTEISKLISEAITPNIFLEKYPRASID 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ E++G +    + G+SLAL DA +P+   ++  A+G V   DD I+L D+S  ED
Sbjct: 115 ISIEVLEAEGGTRCLGIVGASLALADAEIPMKDLISACAVGKV---DDHIVL-DLSEQED 170

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
             G  D  +A       IT +QMD   G +++     AL  A  G  +I N++ K
Sbjct: 171 QTGQADMPLAIIPRTGEITFLQMD---GNLTQEEFEEALDLAYDGCYYI-NQLQK 221


>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
           35061]
 gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
          Length = 234

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 16/234 (6%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M+ + +R DGR    +R I  + G+L+R  GS+    G  + I+V   G RE   Y+  L
Sbjct: 1   MMSEMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNK-ILVAVYGPRE--SYIRRL 57

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RI 425
                      YN  P +  +  R G P RR     ++   A+ P L     +P ++  I
Sbjct: 58  LEPNTGVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPAL-MLENYPRSMVDI 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ E++G +  A +  +S+AL+DAG+P+   V G A G V   +D IIL D+S  ED 
Sbjct: 116 YIEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKV---NDEIIL-DLSEVEDK 171

Query: 486 LGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G  D  +A       IT +Q D   G +S+     A+  A  G    +NE+ K
Sbjct: 172 EGQADVPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEG-CRKVNEIQK 221



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69
           RP+K+E G + R    A L   G  +++A       Y R L +      +   Y    ++
Sbjct: 17  RPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGV-IRCRYNMAPFS 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           V        R+   P      IS++   ++RP         + V I +   + E      
Sbjct: 76  VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMV 188
            + AAS AL+ +G+P +  VVG     +N + +L+   +++ +G  D+ ++       + 
Sbjct: 130 GITAASVALVDAGIPMKDIVVGCAAGKVNDEIILDLSEVEDKEGQADVPIAMMPRTGEIT 189

Query: 189 ELEAN-QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            L+++  LS++   +AI      C+ V E I K A M
Sbjct: 190 LLQSDGDLSQEEFEEAINLAMEGCRKVNE-IQKEALM 225


>gi|126330536|ref|XP_001381726.1| PREDICTED: similar to zinc finger, CCHC domain containing 17,
           [Monodelphis domestica]
          Length = 246

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           S+ D+P++  I++G+VV V ++GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   SLDDLPDLYTIFRGEVVTVTEYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +D+ K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDKVKLSLSMKVVNQGTGK 96


>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
 gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
          Length = 234

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 16/234 (6%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M+ + +R DGR    +R I  + G+L+R  GS+    G  + I+V   G RE   Y+  L
Sbjct: 1   MMSEMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNK-ILVAVYGPRE--SYIRRL 57

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RI 425
                      YN  P +  +  R G P RR     ++   A+ P L     +P ++  I
Sbjct: 58  LEPNTGVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPAL-MLENYPRSMVDI 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ E++G +  A +  +S+AL+DAG+P+   V G A G V D     I+ D+S  ED 
Sbjct: 116 YIEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDK----IVLDLSEVEDK 171

Query: 486 LGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G  D  +A       IT +Q D   G +S+     A+  A  G    +NE+ K
Sbjct: 172 EGQADVPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEG-CRKVNEIQK 221



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69
           RP+K+E G + R    A L   G  +++A       Y R L +      +   Y    ++
Sbjct: 17  RPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGV-IRCRYNMAPFS 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           V        R+   P      IS++   ++RP         + V I +   + E      
Sbjct: 76  VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 129

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMV 188
            + AAS AL+ +G+P +  VVG     +N + VL+   +++ +G  D+ ++       + 
Sbjct: 130 GITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPRTGEIT 189

Query: 189 ELEAN-QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            L+++  LS++   +AI      C+ V E I K A M
Sbjct: 190 LLQSDGDLSQEEFEEAINLAMEGCRKVNE-IQKEALM 225


>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
           11548]
 gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
 gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           calidifontis JCM 11548]
          Length = 246

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 14/245 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   +R DGR  + +R++  QVG +    GS++   G T A+  V  G RE   +   L
Sbjct: 8   LLQNGLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAV-YGPRE--MHPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +    Q+P + + +
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAV-MLEQYPRSRIDV 123

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             EI ++DGS+ +A++  +SLAL DAG+ + + +       + DG    ++ D++G ED+
Sbjct: 124 FIEILQADGSTRVASLTAASLALADAGIYM-RDLVVGVSVGLVDG---TVVLDLNGLEDN 179

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  V    +    T +Q+D   G  +    + AL  A +G  ++     + L    
Sbjct: 180 YGEGDMPVGYMPNLRRFTLLQLD---GAWTREKFLEALGLAVKGAEYVYQVAREALKNKY 236

Query: 544 LQLGE 548
           + + E
Sbjct: 237 MAIAE 241



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R ++++ G ++  +DG+ + +YG T  +A V   R +       P    + V Y    ++
Sbjct: 24  REVQIQVGTVS-NADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
                    R+   P+  EI IS+++  ++ P  +  +  ++   V I ++Q D   S  
Sbjct: 83  TKD-----ERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD--GSTR 135

Query: 128 VVSMVAASAALMLSGL 143
           V S+ AAS AL  +G+
Sbjct: 136 VASLTAASLALADAGI 151


>gi|167949191|ref|ZP_02536265.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 49

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK 108
           ++YQE+TYA GKIPGG+ RRE RP+E EIL SR+IDR IRPLF K Y+
Sbjct: 1   MDYQEKTYAAGKIPGGFFRREGRPSEKEILTSRLIDRPIRPLFPKGYQ 48


>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
 gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
 gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
          Length = 239

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 15/234 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R +  Q G+L+R  GS+    G  + IV    G R  E +        R
Sbjct: 14  LRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANK-IVAAVYGPR--ELHPRHKQKPDR 70

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN  P +  E  R G P RR I   +L++ A+ P +  T  +P T + I  E+ 
Sbjct: 71  AVVRFRYNMAPFSVDERKRPG-PDRRSIEISKLSKEALEPAI-FTEYYPRTAIDIFVEVL 128

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++D  +  A +  +S+AL DAG+ +   VA  A G V+      ++ D    ED  G  D
Sbjct: 129 QADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGK----VVLDPMYYEDGYGEAD 184

Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             +A    +  IT +QMD   G ++      A++ AK+G   +  E  + L E 
Sbjct: 185 VPLAMMPKEGKITLLQMD---GDMTPGEFKQAVKLAKKGCKIVYKEQRRALKEK 235



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYA 69
           RPLK++ G + +++DG+     G   ++A V   R L    K   D   +   Y    ++
Sbjct: 25  RPLKIQAG-VLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVRFRYNMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   ++ P +F++ Y +    + + V+Q D  +   
Sbjct: 84  VDE------RKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQAD--AGTR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
              + AAS AL  +G+     V       + G+ VL+P   ED
Sbjct: 136 CAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYED 178


>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 243

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 12/201 (5%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R+DGR    +R I  +VG+L+R  GS+ FI      I+    G  E   Y   +  
Sbjct: 10  DNGLRIDGRLPNQLRPIKMEVGVLKRADGSA-FIEWGGNKIIAAVYGPHE--AYPKHVQE 66

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
             R      Y+  P +  E  R G P RR I   ++   A+  V+    ++P T + +  
Sbjct: 67  ADRAIVRARYSMAPFSVDERKRPG-PDRRAIELSKVISEALESVI-FVEKYPRTSIDVYI 124

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ ++D  + +A +  +SLAL DAG+P+   + G A G +   DD ++L D++ +ED+ G
Sbjct: 125 EVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKI---DDVVVL-DLNKEEDNFG 180

Query: 488 HMDFKVA--GTDSGITAMQMD 506
             D  +A       I  +QMD
Sbjct: 181 QADVPMAIMPRTKEIALLQMD 201



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E G + +++DG+    +G   ++A V      Y + +++  D   +   Y    +
Sbjct: 24  RPIKMEVG-VLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEA-DRAIVRARYSMAPF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSP 126
           +V +      R+   P    I +S++I  ++   +F + Y +    V I V+Q D  +  
Sbjct: 82  SVDE------RKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQAD--AGT 133

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
            V  +  AS AL  +G+P    +VG     I+   VL+   +ED 
Sbjct: 134 RVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDN 178


>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 245

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 12/201 (5%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R+DGR    +R I  +VG+L+R  GS+ FI      I+    G  E   Y   +  
Sbjct: 12  DNGLRIDGRLPNQLRPIKMEVGVLKRADGSA-FIEWGGNKIIAAVYGPHE--AYPKHVQE 68

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
             R      Y+  P +  E  R G P RR I   ++   A+  V+    ++P T + +  
Sbjct: 69  ADRAIVRARYSMAPFSVDERKRPG-PDRRAIELSKVISEALESVI-FVEKYPRTSIDVYI 126

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ ++D  + +A +  +SLAL DAG+P+   + G A G +   DD ++L D++ +ED+ G
Sbjct: 127 EVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKI---DDVVVL-DLNKEEDNFG 182

Query: 488 HMDFKVA--GTDSGITAMQMD 506
             D  +A       I  +QMD
Sbjct: 183 QADVPMAIMPRTKEIALLQMD 203



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E G + +++DG+    +G   ++A V      Y + +++  D   +   Y    +
Sbjct: 26  RPIKMEVG-VLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEA-DRAIVRARYSMAPF 83

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCY-KNETQVIINVMQHDLESSP 126
           +V +      R+   P    I +S++I  ++   +F + Y +    V I V+Q D  +  
Sbjct: 84  SVDE------RKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQAD--AGT 135

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
            V  +  AS AL  +G+P    +VG     I+   VL+   +ED 
Sbjct: 136 RVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDN 180


>gi|29351673|gb|AAH49283.1| Pnpt1 protein [Mus musculus]
          Length = 235

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           GT+ GITA+Q D+K+ G+   I++ A+QQA   +  IL  M+K +S+ R    E  P VE
Sbjct: 1   GTNKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVE 60

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            + +P  +    +G GG  ++ +  +TG  ++  D+ T  I + +   +  AR+ I  I 
Sbjct: 61  TVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFITEIC 120

Query: 615 -----DVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKE-G 667
                   E   +Y   + ++ D G  V  +      L+H SQL   ++   + +  E G
Sbjct: 121 RDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVG 180

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVV 690
             + VK    D   G+++LS KV+
Sbjct: 181 QEIQVKYFGRDPADGRMRLSRKVL 204


>gi|324501835|gb|ADY40813.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 [Ascaris
           suum]
          Length = 1223

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 4/87 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDT 669
           I + P V KIY G+V  +  FGAFV   G R   +GL+HISQ+  ERV   +DV+  G  
Sbjct: 249 IDEEPVVGKIYTGRVNSIQSFGAFVQLEGFRQRFEGLLHISQIRKERVNAVADVLNRGQK 308

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           + VK+L F++ GKI LSMK VDQ+TG+
Sbjct: 309 IKVKVLKFEN-GKISLSMKEVDQDTGE 334


>gi|328710981|ref|XP_001948871.2| PREDICTED: ATP-dependent RNA helicase DHX8-like [Acyrthosiphon
           pisum]
          Length = 1251

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTE-RVAKT 660
           E   + I S +  PE+ K+Y G+V+ ++DFG FV     R   GLVHISQL  + RV   
Sbjct: 279 ERHEKEIESKSKFPELGKVYAGKVLNIVDFGCFVQLDMFRQSQGLVHISQLRQKGRVTSV 338

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           SDVV  GD V VK+L      KI LSMK VDQ+TG+
Sbjct: 339 SDVVSRGDKVMVKVLSISGNQKISLSMKDVDQDTGE 374


>gi|17535281|ref|NP_495019.1| Masculinisation Of Germline family member (mog-5) [Caenorhabditis
           elegans]
 gi|2500543|sp|Q09530|MOG5_CAEEL RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase mog-5; AltName: Full=Masculinization of
           germline protein 5; AltName: Full=Sex determination
           protein mog-5
 gi|733602|gb|AAC46765.1| Masculinisation of germline protein 5, confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|9864170|gb|AAG01332.1| sex determining protein MOG-5 [Caenorhabditis elegans]
          Length = 1200

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++V E+ KIY G+V  +  FGAF+   G R   +GLVHISQ+  ERV   +DV+K G+ V
Sbjct: 228 SEVAEIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENV 287

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
            VK+   ++ GKI LSMK VDQN+G+
Sbjct: 288 KVKVNKIEN-GKISLSMKEVDQNSGE 312


>gi|310796591|gb|EFQ32052.1| helicase associated domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 1198

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 15/122 (12%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++Q   + N DD+   +   +   E++          D P+++KIY G V  + DFGAFV
Sbjct: 198 LKQKSRRRNYDDEDDGRFRRAPEPEVD----------DAPQLHKIYGGHVTGIKDFGAFV 247

Query: 638 HFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +  G R   DGLVHIS+L   +RV   SD++ +G  VWVK++  +   +I LSMK VDQ 
Sbjct: 248 NIHGVRGKVDGLVHISRLVDGQRVNHPSDLLTKGQEVWVKVVSMEG-NRIGLSMKEVDQE 306

Query: 694 TG 695
           TG
Sbjct: 307 TG 308


>gi|167947926|ref|ZP_02535000.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 64

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           MDFGAFV     +DGLVHISQ+S ERV K SD + EGD + VK+L+ D +G+I+LSMK V
Sbjct: 1   MDFGAFVTILPGKDGLVHISQISNERVEKVSDKLSEGDNIRVKVLEVDKQGRIRLSMKAV 60

Query: 691 DQ 692
           ++
Sbjct: 61  EE 62


>gi|147856641|emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]
          Length = 1162

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +D PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+
Sbjct: 226 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 285

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VK++    + K+ LSM+ VDQNTG+ ++
Sbjct: 286 VKVISVSGQ-KLSLSMRDVDQNTGRDLI 312


>gi|322694281|gb|EFY86115.1| ATP-dependent RNA helicase DHX8 [Metarhizium acridum CQMa 102]
          Length = 1196

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 5/87 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQ-LSTERVAKTSDVVKEGD 668
           I D P++NK+Y+G V  V DFGAFV   H  G  DGLVHIS+ ++ +RV   SD++ +G 
Sbjct: 222 IDDAPKLNKVYQGHVTGVRDFGAFVNIHHVRGKVDGLVHISRIIAGQRVNHPSDLLSKGQ 281

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            VWVK+   +   +I LSMK VDQ TG
Sbjct: 282 DVWVKVTSIEG-NRIGLSMKDVDQETG 307


>gi|159163874|pdb|2CQO|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human
           Hypothetical Protein Flj11067
          Length = 119

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 15  TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 74

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 75  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 103


>gi|296207298|ref|XP_002750581.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 1 [Callithrix
           jacchus]
 gi|296207300|ref|XP_002750582.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 2 [Callithrix
           jacchus]
          Length = 241

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|225439090|ref|XP_002268493.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 1219

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +D PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+
Sbjct: 261 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 320

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VK++    + K+ LSM+ VDQNTG+ ++
Sbjct: 321 VKVISVSGQ-KLSLSMRDVDQNTGRDLI 347


>gi|109000926|ref|XP_001098481.1| PREDICTED: nucleolar protein of 40 kDa isoform 4 [Macaca mulatta]
 gi|109000928|ref|XP_001098574.1| PREDICTED: nucleolar protein of 40 kDa isoform 5 [Macaca mulatta]
 gi|90077370|dbj|BAE88365.1| unnamed protein product [Macaca fascicularis]
          Length = 241

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|291399417|ref|XP_002716156.1| PREDICTED: zinc finger, CCHC domain containing 17 [Oryctolagus
           cuniculus]
          Length = 201

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|74179802|dbj|BAE36478.1| unnamed protein product [Mus musculus]
          Length = 185

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|225439092|ref|XP_002268542.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 1175

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +D PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+
Sbjct: 217 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 276

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VK++    + K+ LSM+ VDQNTG+ ++
Sbjct: 277 VKVISVSGQ-KLSLSMRDVDQNTGRDLI 303


>gi|119628028|gb|EAX07623.1| zinc finger, CCHC domain containing 17, isoform CRA_c [Homo
           sapiens]
          Length = 226

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|23346607|ref|NP_694800.1| nucleolar protein of 40 kDa [Mus musculus]
 gi|73921229|sp|Q9ESX4|NO40_MOUSE RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName:
           Full=Putative S1 RNA-binding domain protein; Short=PS1D
           protein; AltName: Full=Zinc finger CCHC
           domain-containing protein 17
 gi|9843775|emb|CAC03718.1| PS1D protein [Mus musculus]
 gi|17390897|gb|AAH18382.1| Zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|29165675|gb|AAH49231.1| Zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|29568410|gb|AAO83392.1| LDC4 [Mus musculus]
 gi|74214498|dbj|BAE31100.1| unnamed protein product [Mus musculus]
 gi|74223177|dbj|BAE40725.1| unnamed protein product [Mus musculus]
 gi|148698192|gb|EDL30139.1| mCG13527 [Mus musculus]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|21361576|ref|NP_057589.2| nucleolar protein of 40 kDa [Homo sapiens]
 gi|114555227|ref|XP_001158793.1| PREDICTED: putative S1 RNA binding domain protein isoform 6 [Pan
           troglodytes]
 gi|114555229|ref|XP_001158835.1| PREDICTED: putative S1 RNA binding domain protein isoform 7 [Pan
           troglodytes]
 gi|114555231|ref|XP_001158878.1| PREDICTED: putative S1 RNA binding domain protein isoform 8 [Pan
           troglodytes]
 gi|114555233|ref|XP_001158920.1| PREDICTED: putative S1 RNA binding domain protein isoform 9 [Pan
           troglodytes]
 gi|114555235|ref|XP_001158971.1| PREDICTED: nucleolar protein of 40 kDa isoform 10 [Pan troglodytes]
 gi|73921227|sp|Q9NP64|NO40_HUMAN RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName:
           Full=Pnn-interacting nucleolar protein; AltName:
           Full=Putative S1 RNA-binding domain protein; Short=PS1D
           protein; AltName: Full=Zinc finger CCHC
           domain-containing protein 17
 gi|7106876|gb|AAF36163.1|AF151077_1 HSPC243 [Homo sapiens]
 gi|7023499|dbj|BAA91984.1| unnamed protein product [Homo sapiens]
 gi|10433933|dbj|BAB14066.1| unnamed protein product [Homo sapiens]
 gi|10436319|dbj|BAB14799.1| unnamed protein product [Homo sapiens]
 gi|13938589|gb|AAH07446.1| Zinc finger, CCHC domain containing 17 [Homo sapiens]
 gi|29792265|gb|AAH50609.1| Zinc finger, CCHC domain containing 17 [Homo sapiens]
 gi|55665390|emb|CAH71849.1| zinc finger, CCHC domain containing 17 [Homo sapiens]
 gi|119628026|gb|EAX07621.1| zinc finger, CCHC domain containing 17, isoform CRA_b [Homo
           sapiens]
 gi|119628029|gb|EAX07624.1| zinc finger, CCHC domain containing 17, isoform CRA_b [Homo
           sapiens]
 gi|123993141|gb|ABM84172.1| zinc finger, CCHC domain containing 17 [synthetic construct]
 gi|124000131|gb|ABM87574.1| zinc finger, CCHC domain containing 17 [synthetic construct]
 gi|261859994|dbj|BAI46519.1| zinc finger, CCHC domain containing 17 [synthetic construct]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
          Length = 233

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 16/229 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I  + G+L+R  GS+    G  + I+V   G RE   Y+  L     
Sbjct: 5   IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNK-ILVAVYGPRE--SYIRRLLEPNT 61

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSEIT 430
                 YN  P +  +  R G P RR     ++   A+ P L     +P ++  I  E+ 
Sbjct: 62  GVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPAL-MLENYPRSMVDIYIEVI 119

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E++G +  A +  +S+AL+DAG+P+   V G A G V D     I+ D+S  ED  G  D
Sbjct: 120 EAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDK----IVLDLSEVEDKEGQAD 175

Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
             +A       IT +Q D   G +S+     A+  A  G    +NE+ K
Sbjct: 176 VPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEG-CRKVNEIQK 220



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69
           RP+K+E G + R    A L   G  +++A       Y R L +      +   Y    ++
Sbjct: 16  RPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGV-IRCRYNMAPFS 74

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           V        R+   P      IS++   ++RP         + V I +   + E      
Sbjct: 75  VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEGGTRCA 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMV 188
            + AAS AL+ +G+P +  VVG     +N + VL+   +++ +G  D+ ++       + 
Sbjct: 129 GITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPRTGEIT 188

Query: 189 ELEAN-QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            L+++  LS++   +AI      C+ V E I K A M
Sbjct: 189 LLQSDGDLSQEEFEEAINLAMEGCRKVNE-IQKEALM 224


>gi|149694142|ref|XP_001503960.1| PREDICTED: similar to zinc finger, CCHC domain containing 17 [Equus
           caballus]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|33875741|gb|AAH00685.1| ZCCHC17 protein [Homo sapiens]
          Length = 234

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|332254544|ref|XP_003276389.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 1 [Nomascus
           leucogenys]
          Length = 240

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|73950483|ref|XP_535332.2| PREDICTED: similar to putative S1 RNA binding domain protein [Canis
           familiaris]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|114555237|ref|XP_001158210.1| PREDICTED: putative S1 RNA binding domain protein isoform 1 [Pan
           troglodytes]
          Length = 203

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|255011564|ref|ZP_05283690.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           3_1_12]
          Length = 101

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 61/90 (67%), Gaps = 2/90 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A  +I+ I  VPE+ ++YKG+V  +M +GAFV F   +DGL+HIS++  +R+    +
Sbjct: 5   IDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEE 64

Query: 663 V-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             +KEGD + VKL+D D + GK KLS KV+
Sbjct: 65  AGIKEGDEIEVKLIDIDPKTGKFKLSRKVL 94


>gi|157816901|ref|NP_001102737.1| nucleolar protein of 40 kDa [Rattus norvegicus]
 gi|149024094|gb|EDL80591.1| similar to PS1D protein (predicted) [Rattus norvegicus]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|77736247|ref|NP_001029824.1| nucleolar protein of 40 kDa [Bos taurus]
 gi|74354076|gb|AAI02396.1| Zinc finger, CCHC domain containing 17 [Bos taurus]
 gi|95769249|gb|ABF57421.1| putative S1 RNA binding domain protein [Bos taurus]
 gi|296490195|gb|DAA32308.1| zinc finger, CCHC domain containing 17 [Bos taurus]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|301777191|ref|XP_002924018.1| PREDICTED: nucleolar protein of 40 kDa-like [Ailuropoda
           melanoleuca]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|90075056|dbj|BAE87208.1| unnamed protein product [Macaca fascicularis]
          Length = 241

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GL+H + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLIHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRIKVSLSMKVVNQGTGK 96


>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
 gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
          Length = 233

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 32/232 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGRD   +RD   ++G++ +  GS+    G+T AI  V L             G ++
Sbjct: 1   MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLK-----------PGREQ 49

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEIT 430
           ++  + Y  LP A  E   +G  +RREI    +  +A+ P +    + PY T+    EI 
Sbjct: 50  SNLKVSYRMLPFAGEERKGLGL-TRREIELSYIIAKALEPAII-FEEIPYLTIEASVEII 107

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------------KDGDDFIILSD 478
           ++D  + +A +   SLAL  AG+P+   V  IA+G V            +D D  II  +
Sbjct: 108 KADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKE 167

Query: 479 ISGDEDHLGH---MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           +    ++ G    +D  +A   + IT +Q+D   G I    ++ A++  K G
Sbjct: 168 LPQYYEYYGEGKAVDIPMAMYKNKITLLQLD---GSIDRKSLLEAIKLGKDG 216


>gi|46195824|ref|NP_996861.1| nucleolar protein of 40 kDa [Gallus gallus]
 gi|41059103|gb|AAR99080.1| PS1D [Gallus gallus]
          Length = 239

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 4/85 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +PE+  I++G+V  V ++GAF+   G R  GLVH + +S+ R+ K S+VV  GD VWVKL
Sbjct: 4   LPELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEVVDVGDKVWVKL 63

Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696
           +     DD+ K+ LSMKVV+Q TGK
Sbjct: 64  IGKEMKDDKLKLSLSMKVVNQGTGK 88


>gi|157833853|pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures
          Length = 76

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 54/71 (76%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ 
Sbjct: 4   EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 63

Query: 678 DDRGKIKLSMK 688
           D +G+I+LS+K
Sbjct: 64  DRQGRIRLSIK 74


>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
 gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
           Hrk 5]
          Length = 245

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 15/230 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +  + G+L+   GS+    G+ + +  V  G RE     ++L    R 
Sbjct: 16  RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAV-YGPREPMPRHEALP--DRA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
                Y+ LP +  E  +   PSRREI   ++ R A+ P +    ++P T + +   I E
Sbjct: 73  ILKCRYSMLPFSVAE-RKSPQPSRREIELSKVIREALAPAV-FLNEYPRTSIEVYIHILE 130

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +  A++   S+AL DAG+ +   VA IA+G + +    +++ DI+G ED  G  D 
Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDLVAAIAVGKIGN----VLVLDINGIEDQYGDGDM 186

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            +A       IT +Q D   G  +   +  AL+ A++    I  E  + L
Sbjct: 187 PIAMMPQRGEITLLQAD---GVFTPQEIEEALRLAQKAFQKIYAEQVRAL 233


>gi|326932842|ref|XP_003212521.1| PREDICTED: nucleolar protein of 40 kDa-like [Meleagris gallopavo]
          Length = 239

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 4/85 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +PE+  I++G+V  V ++GAF+   G R  GLVH + +S+ R+ K S++V  GD VWVKL
Sbjct: 4   LPELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEIVDVGDKVWVKL 63

Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696
           +     DD+ K+ LSMKVV+Q TGK
Sbjct: 64  IGKEIKDDKLKLSLSMKVVNQGTGK 88


>gi|322798596|gb|EFZ20200.1| hypothetical protein SINV_03476 [Solenopsis invicta]
          Length = 1206

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 8/95 (8%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           +++  PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RVA  SDVV  G
Sbjct: 245 TLSSEPEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVSRG 304

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK---PIV 699
             V VK+L+   + K+ LSMK VDQ TG+   P+V
Sbjct: 305 QKVLVKVLNVGGQ-KVSLSMKDVDQETGRDLNPVV 338


>gi|312384431|gb|EFR29163.1| hypothetical protein AND_02133 [Anopheles darlingi]
          Length = 1308

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 5/94 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           R+    + + PEV KIY  +VV ++ FG FV   G R   +GLVHISQLSTE RV   +D
Sbjct: 334 RQRTPPMPEEPEVGKIYDARVVNIVAFGCFVQLVGFRRKKEGLVHISQLSTEGRVNLVTD 393

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VV  GD V VK++      KI LSMK V+Q+TG+
Sbjct: 394 VVNRGDDVKVKVMSLAG-NKISLSMKEVEQSTGR 426


>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
 gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
          Length = 243

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 26/240 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R +   +G+L+  +GS+L   G+T+A+  V  G RE       +S   R
Sbjct: 13  LRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAV-YGPRE--AMPKHISLPDR 69

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEIT 430
               + Y+  P +T E  +  APSRREI   ++ R A+  V+  T Q+P  ++ +  EI 
Sbjct: 70  AVLRVRYHMAPFSTSE-RKSPAPSRREIELSKVIREALESVV-FTTQYPRASIDVFIEIL 127

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++DG +  A +  +SLAL DAG+P+      + +G+       +++ DI+  ED  G  D
Sbjct: 128 QADGGTRTAGLTAASLALADAGIPMKD----LVIGVAVGKVGGVLVLDINELEDEYGEAD 183

Query: 491 FKV--AGTDSGITAMQ-------------MDMKIGGISENIMVMALQQAKRGRLHILNEM 535
             V  A   + I  +Q             M+M   G+ E I  +A +   R  L +L E+
Sbjct: 184 LPVGIAPNTNEIVLLQLNGVLTPEEFKQAMEMAFKGV-EQIYKVAKEAMYRKYLKMLEEV 242



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++  G + + ++G+ L  YG T  LA V   R         P    L V Y    ++
Sbjct: 24  RPVRIAIG-VLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVLRVRYHMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++  + F+  Y   +  V I ++Q D      
Sbjct: 83  TSE------RKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQAD--GGTR 134

Query: 128 VVSMVAASAALMLSGLPFE 146
              + AAS AL  +G+P +
Sbjct: 135 TAGLTAASLALADAGIPMK 153


>gi|255539416|ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1177

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 3/85 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE+ ++YKG+V +VMD G FV     R  +GLVH+SQ++T R+A   DVVK    V+VK+
Sbjct: 220 PELYRVYKGRVSRVMDSGCFVQLNDFRGKEGLVHVSQMATRRIANAKDVVKRDQDVFVKV 279

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699
           +    + K+ LSM+ VDQN+GK ++
Sbjct: 280 ISVSGQ-KLSLSMRDVDQNSGKDLL 303


>gi|307169908|gb|EFN62417.1| ATP-dependent RNA helicase DHX8 [Camponotus floridanus]
          Length = 1204

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 56/90 (62%), Gaps = 8/90 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RVA  SDVV  G  V V
Sbjct: 248 PEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVSRGQKVLV 307

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK---PIV 699
           K+L    + K+ LSMK VDQ TGK   P+V
Sbjct: 308 KVLSVGGQ-KVSLSMKDVDQETGKDLNPVV 336


>gi|222622658|gb|EEE56790.1| hypothetical protein OsJ_06372 [Oryza sativa Japonica Group]
          Length = 953

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE+ ++Y+G+V +VMD G FV      G R+GLVHISQ++T RVA   ++VK    V+VK
Sbjct: 279 PELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYVK 338

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++    + K+ LSM+ VDQ+TG+ ++
Sbjct: 339 VVSVKGQ-KLSLSMRDVDQDTGRDLL 363


>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG6J21]
          Length = 245

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 13/205 (6%)

Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           V+LD+  +R DGR     R ++ +VG+L+   GS+ +I      I+    G R+   +  
Sbjct: 9   VLLDENGIRSDGRKVNETRKVTIKVGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
            +S        + Y+  P +  E  +  APSRREI   ++ + A+ P +    +FP T +
Sbjct: 66  HMSNPDTGILRVRYHMAPFSVSE-RKNPAPSRREIEISKVLKEALEPAV-ILEKFPRTAI 123

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+ ++DG +  A +  +S+AL DAG+P+   V   A G V D     ++ D++ +E
Sbjct: 124 DVYLEVLQADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKVADA----LILDVNNEE 179

Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506
           D  G  D  +    +   IT +Q+D
Sbjct: 180 DQAGQADMPIGYMPNFGKITLLQLD 204



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 18/203 (8%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78
           + + +DG+    +G   +LA V   R +       P    L V Y    ++V +      
Sbjct: 35  VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMAPFSVSE------ 88

Query: 79  RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D        ++ AAS 
Sbjct: 89  RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD--GGTRCAALDAASV 146

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD--AVLMVELEAN 193
           AL  +G+P    V       +    +L+   +EDQ G  D+ +    +   + +++L+  
Sbjct: 147 ALADAGIPMRDMVCSCAAGKVADALILDVNNEEDQAGQADMPIGYMPNFGKITLLQLDG- 205

Query: 194 QLSEDVVLDAIIFGHNECKPVIE 216
            L+ D     I  G   CK V E
Sbjct: 206 VLTTDEFKKCIELGIEGCKQVYE 228


>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
 gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
          Length = 245

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 22/227 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR--EDEQYVDSLSGTQ 370
           R+DGR  + +R I  + G+L+   GS     G  + +  V  G R  + +   D      
Sbjct: 13  RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAV-YGPRKVQPKHLADPTQAIV 71

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEI 429
           R      YN  P +  E  R G P RR +   +++R A+  ++ +   FP + + I  E+
Sbjct: 72  R----YRYNMAPFSVEERKRPG-PDRRSVEISKVSREALESIIMKEL-FPRSSIDIFVEV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++D  S  A +  +S+AL+DAG+P+   +  +A+  V    D +++ D   +ED+ G  
Sbjct: 126 LQADAGSRTACLNAASVALVDAGIPMKGIITSVAVAKV----DGVLVLDPMKEEDNYGEA 181

Query: 490 DFKVA-----GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D   A     G    I  +QMD   G +++  ++ A++ AK+G + I
Sbjct: 182 DIPFAFFIRNGKIESIALLQMD---GRVTKEELMQAVELAKKGAMEI 225



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 94/199 (47%), Gaps = 21/199 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+     G+  V+A V   R ++      P    +   Y    ++
Sbjct: 23  RPIKIEAG-VLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVRYRYNMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++   ++  +  K    ++   + + V+Q D  S   
Sbjct: 82  VEE------RKRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQADAGS--R 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL----FV-SGT 181
              + AAS AL+ +G+P +G +    V  ++G  VL+P  +ED  G  D+    F+ +G 
Sbjct: 134 TACLNAASVALVDAGIPMKGIITSVAVAKVDGVLVLDPMKEEDNYGEADIPFAFFIRNGK 193

Query: 182 QDAVLMVELEANQLSEDVV 200
            +++ +++++     E+++
Sbjct: 194 IESIALLQMDGRVTKEELM 212


>gi|46121247|ref|XP_385178.1| hypothetical protein FG05002.1 [Gibberella zeae PH-1]
          Length = 1195

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 8/92 (8%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P+++K+Y+G V  + DFG FV+    +   DGLVH+S++ST +RV   SD+V +G 
Sbjct: 218 VDDSPQLHKVYQGHVTGLKDFGCFVNLHNVKGRVDGLVHVSRMSTGQRVNHPSDLVTQGQ 277

Query: 669 TVWVKLLDFDD----RGKIKLSMKVVDQNTGK 696
            VWVK+   D     R ++ LSMK VDQ  G+
Sbjct: 278 EVWVKVTSLDKDQNGRDRVGLSMKDVDQQNGQ 309


>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
           fervidus DSM 2088]
 gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
           fervidus DSM 2088]
          Length = 236

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR    +R +  + G+L+R  GSS +I   +  I+    G R+ +  +  +    R
Sbjct: 11  VRKDGRAYNELRPVKIKAGVLKRADGSS-YIELGSNKILAAVYGPRDPQ--ITKIKRPDR 67

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN  P +  E  R G P RR I   ++   A+ P +    +FP + + I  E+ 
Sbjct: 68  AIIRCRYNMAPFSVEERKRPG-PDRRSIEISKITAEALAPSI-ILEKFPRSSIDIFIEVL 125

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E+DG +  A +  +S+AL DAG+P+   V   + G V   +  ++L D++ +ED  G  D
Sbjct: 126 EADGGTRCAGITAASVALADAGIPLRDLVVACSAGKV---NGHVVL-DLTEEEDKEGEAD 181

Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
             VA       IT +Q+D   G ++   +  A+  A  G + I N++ K
Sbjct: 182 VPVAIMPRTKEITLLQVD---GELTPEELEKAIDLAIEGCMSI-NKLQK 226



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + +++DG+     G   +LA V   R  +  +   P    +   Y    ++
Sbjct: 22  RPVKIKAG-VLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAIIRCRYNMAPFS 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   ++ P  +  K  ++   + I V++ D      
Sbjct: 81  VEE------RKRPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVLEAD--GGTR 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
              + AAS AL  +G+P    VV      +NG  VL+   +ED +G  D+ V+
Sbjct: 133 CAGITAASVALADAGIPLRDLVVACSAGKVNGHVVLDLTEEEDKEGEADVPVA 185


>gi|48716672|dbj|BAD23339.1| putative RNA helicase [Oryza sativa Japonica Group]
          Length = 1240

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE+ ++Y+G+V +VMD G FV      G R+GLVHISQ++T RVA   ++VK    V+VK
Sbjct: 279 PELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYVK 338

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++    + K+ LSM+ VDQ+TG+ ++
Sbjct: 339 VVSVKGQ-KLSLSMRDVDQDTGRDLL 363


>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8O8]
          Length = 245

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           V+LD+  +R DGR     R ++ + G+L+   GS+ +I      I+    G R+   +  
Sbjct: 9   VLLDENGIRCDGRKVNETRKVTIKAGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
            LS        + Y+  P +  E  +  APSRREI   ++ + A+ P +    +FP T +
Sbjct: 66  HLSNPDTGILRVRYHMEPFSVDE-RKNPAPSRREIEISKVVKEALEPAV-ILEKFPRTVI 123

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+ ++DG +  A +  +S+AL DAG+P+   V   A G V D     ++ D++ +E
Sbjct: 124 DVFLEVLQADGGTRCAALDAASVALADAGIPMRDMVCACAAGKVAD----TLIIDVNNEE 179

Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506
           D  G  D  V    +   +T +Q+D
Sbjct: 180 DQAGQADMPVGYMPNLGKVTLLQLD 204



 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 16/172 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R + ++ G + + +DG+    +G   +LA V   R +       P    L V Y    ++
Sbjct: 27  RKVTIKAG-VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGILRVRYHMEPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D      
Sbjct: 86  VDE------RKNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQAD--GGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
             ++ AAS AL  +G+P    V       +    +++   +EDQ G  D+ V
Sbjct: 138 CAALDAASVALADAGIPMRDMVCACAAGKVADTLIIDVNNEEDQAGQADMPV 189


>gi|156836886|ref|XP_001642483.1| hypothetical protein Kpol_322p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113018|gb|EDO14625.1| hypothetical protein Kpol_322p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1143

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 4/84 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           P VNKIYKG+V  +  FG FV   G +    DGLVHISQLS   +    +++     V++
Sbjct: 184 PIVNKIYKGKVRSITSFGCFVQILGTKKINCDGLVHISQLSQHHINDPYEIISVNQIVYI 243

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K++     GKI LSMK VDQ TG+
Sbjct: 244 KVIKVQRNGKISLSMKEVDQKTGR 267


>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
 gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
          Length = 243

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 16/234 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R +  + G+L+R  GS+    G  + +  V  G RE   +V  L    + 
Sbjct: 19  RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAV-YGPRE--LFVRRLMQPNKA 75

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEITE 431
                YN  P +  +  R G P RR +   +LA +A+ P +    +FP  T+ +  E+ E
Sbjct: 76  VLRCKYNMAPFSVDDRKRPG-PDRRSVEISKLASQALTPAV-FLEKFPRSTIDVFIEVIE 133

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           ++G +  A +  +S+AL DAG+P+   V   A G     D  +IL D+S  ED  G  D 
Sbjct: 134 AEGGTRCAGITAASVALADAGIPMRDMVVACAAG---KSDGKVIL-DLSEVEDKEGQADV 189

Query: 492 KVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            +A       IT +QMD   G ++E     AL  A  G   I++E  K   ++R
Sbjct: 190 PIAIMPRTGEITLLQMD---GNLTEEEFEQALDLAING-CKIISEKQKAAIKNR 239



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 19/212 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + R +DG+     G   VLA V   R L   +   P    L   Y    ++
Sbjct: 29  RKMKIEAGVLER-ADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLRCKYNMAPFS 87

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V        R+   P    + IS++  +++ P     K  ++   V I V++   E    
Sbjct: 88  VDD------RKRPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEA--EGGTR 139

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              + AAS AL  +G+P    VV       +G+ +L+    ED   Q  + + +      
Sbjct: 140 CAGITAASVALADAGIPMRDMVVACAAGKSDGKVILDLSEVEDKEGQADVPIAIMPRTGE 199

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
           + +++++ N L+E+    A+    N CK + E
Sbjct: 200 ITLLQMDGN-LTEEEFEQALDLAINGCKIISE 230


>gi|125539090|gb|EAY85485.1| hypothetical protein OsI_06862 [Oryza sativa Indica Group]
          Length = 1240

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE+ ++Y+G+V +VMD G FV      G R+GLVHISQ++T RVA   ++VK    V+VK
Sbjct: 279 PELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYVK 338

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++    + K+ LSM+ VDQ+TG+ ++
Sbjct: 339 VVSVKGQ-KLSLSMRDVDQDTGRDLL 363


>gi|332029746|gb|EGI69615.1| ATP-dependent RNA helicase DHX8 [Acromyrmex echinatior]
          Length = 1198

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 59/95 (62%), Gaps = 8/95 (8%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           +++  PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RVA  SDVV  G
Sbjct: 237 TLSAEPEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVSRG 296

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK---PIV 699
             V VK+L    + K+ LSMK VDQ TG+   P+V
Sbjct: 297 QKVLVKVLSVGGQ-KVSLSMKDVDQETGRDLNPVV 330


>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 246

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 11/196 (5%)

Query: 301 KVVRTVMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +V++  ++D+  +R+DGR  + +R +  +VG+L++T GS+    G T+ I    +G RE 
Sbjct: 3   EVMKIRLIDENGLRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTR-IYAGVIGPRE- 60

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             +   L    +      Y+    +  E   +G  +RREI   ++ R A+  V+    +F
Sbjct: 61  -VHPKHLELPDKGVINCRYHMASFSVDERKPLGM-TRREIELSKVIREALETVV-FLEEF 117

Query: 420 P-YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           P   + I  E+ ++DG +  A +  +SLAL DAG+P++  +A IA+G V    D +++ D
Sbjct: 118 PRMMIDIFVEVIQADGGTRTAGITAASLALADAGIPMADMIAAIAVGKV----DGVLVLD 173

Query: 479 ISGDEDHLGHMDFKVA 494
           I+  ED  G  D  VA
Sbjct: 174 INEQEDKYGEADMPVA 189


>gi|66558592|ref|XP_623289.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Apis
           mellifera]
          Length = 1192

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 63/103 (61%), Gaps = 11/103 (10%)

Query: 607 REMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAK 659
           R   RS+ ++   PEV KIY G+V  ++ FG FV   G +   +GLVHISQL  E RVA 
Sbjct: 223 RSRSRSVEELSMDPEVGKIYSGKVANIVPFGCFVQLEGLKRRWEGLVHISQLRREGRVAS 282

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK---PIV 699
            SDVV  G  V VK+L+   + K+ LSMK VDQ TG+   P+V
Sbjct: 283 ASDVVSRGQKVLVKVLNIGGQ-KVSLSMKDVDQETGRDLNPVV 324


>gi|307198400|gb|EFN79342.1| ATP-dependent RNA helicase DHX8 [Harpegnathos saltator]
          Length = 1232

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 53/84 (63%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RVA  SDVV  G  V V
Sbjct: 269 PEVGKIYAGKVANIVPFGCFVSLEGLRRRLEGLVHISQLRREGRVANASDVVSRGQRVLV 328

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+L    + K+ LSMK VDQ TG+
Sbjct: 329 KVLSIGGQ-KVSLSMKDVDQETGR 351


>gi|50304197|ref|XP_452048.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641180|emb|CAH02441.1| KLLA0B11638p [Kluyveromyces lactis]
          Length = 1111

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           P ++K+Y G+V  V  FG FV   G R    DGLVH+S+LS+  V K  DVV     V+V
Sbjct: 176 PVLDKVYPGKVQNVTKFGCFVRIFGVRNTNVDGLVHVSELSSSHVDKPEDVVHRNQDVFV 235

Query: 673 KLLDFDDRGKIKLSMKVVDQNTG 695
           K++   + GKI L+MK +DQ+TG
Sbjct: 236 KVIKIQNNGKISLAMKGIDQSTG 258


>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
           639]
 gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
 gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
          Length = 243

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 10/190 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L+  +R DGR  + +R I  ++G+L+   GS++F  G+T+ I  V  G +  E +   
Sbjct: 9   LILENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAV-YGPK--EMHPRH 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           L+   +    + Y+  P +T E  +  APSRREI   ++ R A+   +     FP T + 
Sbjct: 66  LALPDKASLRVRYHMTPFSTDE-RKNPAPSRREIELSKVIREALESTI-LLNLFPRTVID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++D  + +  +  +S+AL DAG+P+   +AG+A+G     D  ++L D++  ED
Sbjct: 124 IFMEVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVG---KADGSLVL-DLNEQED 179

Query: 485 HLGHMDFKVA 494
             G  D  +A
Sbjct: 180 MWGEADMPIA 189


>gi|261878983|ref|ZP_06005410.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
 gi|270334440|gb|EFA45226.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
          Length = 141

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+AA   I+ I  +PEV ++Y+G V  +M +G FV     ++GL+HIS++  +R+A   D
Sbjct: 3   IDAALNKIKGIVAIPEVGEVYEGTVKSIMPYGCFVEILPGKEGLLHISEIEWKRLATVED 62

Query: 663 V-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             +KEGD + VKLLD D + GK KLS +V+
Sbjct: 63  AGIKEGDKIQVKLLDIDAKTGKYKLSHRVL 92


>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8G2]
          Length = 245

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           V+LD+  +R DGR     R ++ +VG+L+   GS+ +I      I+    G R+   +  
Sbjct: 9   VLLDENGIRSDGRKVNETRKVTIKVGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
            +S        + Y+  P +  E  +  APSRREI   ++ + A+ P +    +FP T +
Sbjct: 66  HMSNPDTGILRVRYHMEPFSVSE-RKNPAPSRREIEISKVLKEALEPAV-ILEKFPRTAI 123

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+ ++DG S  A +  +S+AL DAG+P+   V   A G   D     ++ D++ +E
Sbjct: 124 DVYLEVLQADGGSRCAALDAASVALADAGIPMRDMVCSCAAGKAADA----LILDVNNEE 179

Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506
           D  G  D  +    +   IT +Q+D
Sbjct: 180 DQAGQADMPIGYMPNLGKITLLQLD 204



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 18/203 (8%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78
           + + +DG+    +G   +LA V   R +       P    L V Y    ++V +      
Sbjct: 35  VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFSVSE------ 88

Query: 79  RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D        ++ AAS 
Sbjct: 89  RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD--GGSRCAALDAASV 146

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD--AVLMVELEAN 193
           AL  +G+P    V            +L+   +EDQ G  D+ +    +   + +++L+  
Sbjct: 147 ALADAGIPMRDMVCSCAAGKAADALILDVNNEEDQAGQADMPIGYMPNLGKITLLQLDG- 205

Query: 194 QLSEDVVLDAIIFGHNECKPVIE 216
            L+ D     I  G   CK V E
Sbjct: 206 VLTTDEFKKCIELGLEGCKQVYE 228


>gi|1402875|emb|CAA66825.1| RNA helicase [Arabidopsis thaliana]
 gi|1495271|emb|CAA66613.1| RNA helicase [Arabidopsis thaliana]
          Length = 1121

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE+ ++YKG+V +VMD G FV F   R  +GLVH+SQ++T RV K  + VK    V+VK+
Sbjct: 164 PELYQVYKGRVTRVMDAGCFVQFDKFRGKEGLVHVSQMATRRVDKAKEFVKRDMEVYVKV 223

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699
           +      K  LSM+ VDQNTG+ ++
Sbjct: 224 ISISS-DKYSLSMRDVDQNTGRDLI 247


>gi|15231574|ref|NP_189288.1| ATP-dependent RNA helicase, putative [Arabidopsis thaliana]
 gi|27735187|sp|Q38953|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase
 gi|9293935|dbj|BAB01838.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein
           [Arabidopsis thaliana]
 gi|332643657|gb|AEE77178.1| ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana]
          Length = 1168

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE+ ++YKG+V +VMD G FV F   R  +GLVH+SQ++T RV K  + VK    V+VK+
Sbjct: 211 PELYQVYKGRVTRVMDAGCFVQFDKFRGKEGLVHVSQMATRRVDKAKEFVKRDMEVYVKV 270

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699
           +      K  LSM+ VDQNTG+ ++
Sbjct: 271 ISISS-DKYSLSMRDVDQNTGRDLI 294


>gi|255030650|ref|ZP_05302601.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           LO28]
          Length = 106

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 53/80 (66%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++Y G+V ++  FGAFV      DGLVHIS+L+ ERV K  D++K GD V VK+++ 
Sbjct: 5   EVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEV 64

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D +G++ LS K + +   +P
Sbjct: 65  DQQGRVNLSRKALLEKKEQP 84


>gi|323697658|ref|ZP_08109570.1| RNA binding S1 domain protein [Desulfovibrio sp. ND132]
 gi|323457590|gb|EGB13455.1| RNA binding S1 domain protein [Desulfovibrio desulfuricans ND132]
          Length = 486

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K++ DD G +KI   SL+  E A+    +++    V  I  G+VV++ DFGAFV      
Sbjct: 260 KLDKDDKGRLKI---SLSMKELAQNPWDTLSATFAVGDIVSGKVVRLADFGAFVEIAPGV 316

Query: 644 DGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DGLVH+S++S T+RV K +D+VKEGD V VK+   D D+ +I LSMK
Sbjct: 317 DGLVHVSEMSYTKRVNKPADMVKEGDAVTVKIKSIDLDKRRIGLSMK 363



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 22/214 (10%)

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV----LSESR 543
            ++  V G DSG   +++   I GI    M   L++AK G L +  ++        + + 
Sbjct: 82  KVELYVVGKDSG--GIKLSRAISGIGGMAM---LEEAKAGALPVEGKVESTCKGGFNVTI 136

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           LQ   F P  +I A   +     +G   + +   +E  G          + ++  +L E 
Sbjct: 137 LQRRAFCPVSQIDARFVENPEEYVGQTLEFLITKLENHGR--------NIVVSRRALVER 188

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA E  ++  D  +V    +G V ++  FGAFV      +GLVHISQL   RV+   +V
Sbjct: 189 EAA-ESAQTFVDETKVGDEVEGTVTRLAAFGAFVEIMPGLEGLVHISQLGYGRVSHPEEV 247

Query: 664 VKEGDTVWVKL--LDFDDRGKIK--LSMKVVDQN 693
           V  G  V  K+  LD DD+G++K  LSMK + QN
Sbjct: 248 VSVGQKVRAKITKLDKDDKGRLKISLSMKELAQN 281


>gi|322708306|gb|EFY99883.1| ATP-dependent RNA helicase DHX8 [Metarhizium anisopliae ARSEF 23]
          Length = 1196

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 5/87 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQ-LSTERVAKTSDVVKEGD 668
           I D P+++K+Y+G V  V DFGAFV   H  G  DGLVHIS+ ++ +RV   SD++ +G 
Sbjct: 222 IDDAPQLHKVYQGHVTGVRDFGAFVNLHHVRGKVDGLVHISRIIAGQRVNHPSDLLSKGQ 281

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            VWVK+   +   +I LSM+ VDQ TG
Sbjct: 282 DVWVKVTSVEG-NRIGLSMRDVDQETG 307


>gi|308493535|ref|XP_003108957.1| CRE-MOG-5 protein [Caenorhabditis remanei]
 gi|308247514|gb|EFO91466.1| CRE-MOG-5 protein [Caenorhabditis remanei]
          Length = 1208

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 4/86 (4%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++V EV KIY G+V  +  FGAF+   G R   +GL HISQ+  ERV   +DV+K G +V
Sbjct: 239 SEVAEVGKIYDGRVNSIQTFGAFITLEGFRQKQEGLAHISQIRNERVQSVADVLKRGQSV 298

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
            VK+   ++ GKI L+MK VDQ+TG+
Sbjct: 299 KVKVNKIEN-GKISLTMKEVDQSTGE 323


>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
 gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
          Length = 253

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 14/246 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R +  +VG+L R  GS     G  + I  V  G R  E +   L    R
Sbjct: 16  LRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAV-YGPR--EVHPRHLQEVTR 72

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN    +  E  R G P RR     +++R A+ PV+  T+ FP + + +  E+ 
Sbjct: 73  AIVRYRYNMASFSVEERKRPG-PDRRSYELSKVSREALEPVI-LTSFFPRSVIDVFVEVL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++D  +  A +  +++AL DAG+P+   ++  A G V D     I+ D   +ED+ G  D
Sbjct: 131 QADAGTRTAGINAAAVALADAGIPMKSMISSCAAGKVGD----TIVLDPMKEEDNFGQAD 186

Query: 491 FKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
             +A T +G IT MQMD   G ++ +    A+  A +G   I     + L     Q+   
Sbjct: 187 LPIAMTPNGDITLMQMD---GNLTPDEFGQAVTMAMKGAKDIYELQRRALVAKYSQISTD 243

Query: 550 TPRVEI 555
           + R E+
Sbjct: 244 SAREEV 249


>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
 gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
          Length = 248

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 11/201 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR S  +R+I  ++ L  R  GS+ + +G+T+ +  V  G RE +    S     R
Sbjct: 13  LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAV-YGPREVKN--KSQMKNDR 69

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 Y+    +TGE  R     RR      + R+    V+  T  +P T + I  ++ 
Sbjct: 70  AIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVI-LTHLYPRTQIDIFMQVL 128

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++DG +  A +  ++LAL+DAG+P+   V   A G ++       L+D++  ED  G  D
Sbjct: 129 QADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSP----LTDLNYIEDCAGGPD 184

Query: 491 FKVA--GTDSGITAMQMDMKI 509
             +A       +T +QMD K+
Sbjct: 185 VPIALLPKHDKVTLLQMDSKL 205



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 19/214 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYA 69
           R +K +    +R +DG+     G T VLA V   R +K+      D   +   Y   T++
Sbjct: 24  RNIKFKLNLFSR-ADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY-KNETQVIINVMQHDLESSPHV 128
            G+    + +++ R TE  ++I +  +  I    +  Y + +  + + V+Q D       
Sbjct: 83  TGERKRQF-KKDRRSTEISVVIRQTFESVI---LTHLYPRTQIDIFMQVLQAD--GGTRC 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS--GTQDAV 185
             + AA+ AL+ +G+P +  VV     +I G  + +    ED  G  D+ ++     D V
Sbjct: 137 ACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKV 196

Query: 186 LMVELEANQLSED---VVLDAIIFGHNECKPVIE 216
            ++++++ +LS D    VL+  I G  +   VI+
Sbjct: 197 TLLQMDS-KLSLDQFEKVLEHAIEGCKQIHKVID 229


>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
           6242]
 gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
           burtonii DSM 6242]
          Length = 343

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 12/222 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R ++ ++G+L R  GS     G+ + +  V  G RE   +   L     
Sbjct: 14  LRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAV-YGPRE--LHPRRLQRPSE 70

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 YN    +  +  R G PSRR     +++  A   V+ +       + + +E+ +
Sbjct: 71  ALVRYRYNMAAFSVEDRIRPG-PSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVLQ 129

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +D  +  A +  ++LAL+DAG+P+   VA  A+G V    D  ++ D++  ED+ G  D 
Sbjct: 130 ADAGTRTAAINAATLALVDAGIPMKGLVAACAVGKV----DGQLVIDLNKPEDNYGDADL 185

Query: 492 KVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            +A T+ G IT +QMD   G ++ + +   ++  ++G   I 
Sbjct: 186 PIAMTEDGEITLLQMD---GNLTADEIAKGVEMVRKGCEQIF 224



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 21/218 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +E G ++R +DG+    +G   VLA V   R L   +   P    +   Y    ++
Sbjct: 25  RPMTVEMGVLSR-ADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALVRYRYNMAAFS 83

Query: 70  V-GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET--QVIINVMQHDLESSP 126
           V  +I  G  RR +        IS++   +   +  K +       V   V+Q D  +  
Sbjct: 84  VEDRIRPGPSRRSTE-------ISKVSGEAFETVVMKQFYPGAVIDVFAEVLQAD--AGT 134

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA- 184
              ++ AA+ AL+ +G+P +G V    V  ++GQ V++    ED  G  DL ++ T+D  
Sbjct: 135 RTAAINAATLALVDAGIPMKGLVAACAVGKVDGQLVIDLNKPEDNYGDADLPIAMTEDGE 194

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           + +++++ N L+ D +   +      C+ +  AI K A
Sbjct: 195 ITLLQMDGN-LTADEIAKGVEMVRKGCEQIF-AIQKEA 230


>gi|170593781|ref|XP_001901642.1| ATP-dependent helicase DHX8 [Brugia malayi]
 gi|158590586|gb|EDP29201.1| ATP-dependent helicase DHX8, putative [Brugia malayi]
          Length = 1193

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 4/87 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDT 669
           I   P V  IY G+V  + +FGAFV   G R   +GL+HISQ+  +R++  SDV+K    
Sbjct: 223 INLAPVVGHIYSGRVTSIQNFGAFVQLEGLRQRFEGLLHISQIRQDRISAVSDVLKRNQK 282

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V VK++ F + GKI LSMK VDQ TG+
Sbjct: 283 VKVKVIKF-ELGKIGLSMKEVDQETGE 308


>gi|296236363|ref|XP_002763291.1| PREDICTED: nucleolar protein of 40 kDa-like [Callithrix jacchus]
          Length = 241

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++  +P +  I+ G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMEKLPALYTIFHGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           WVKL+     +DR  + LSMKVV+Q TGK
Sbjct: 68  WVKLIGREMKNDRITVSLSMKVVNQGTGK 96


>gi|224116862|ref|XP_002331832.1| predicted protein [Populus trichocarpa]
 gi|222875070|gb|EEF12201.1| predicted protein [Populus trichocarpa]
          Length = 1171

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++ PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+
Sbjct: 211 SNEPELYGVYKGRVSRVMDTGCFVELSDFKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 270

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VK++      K+ LSM+ VDQN+GK ++
Sbjct: 271 VKVISVSG-NKLSLSMRDVDQNSGKDLL 297


>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
           13514]
 gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
 gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 246

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 5/148 (3%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   VR DGR  + +R++   VG++    GS++   G T A+  V  G RE   +   L
Sbjct: 8   LLQNGVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAV-YGPRE--MHPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +    Q+P + + +
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAV-LLEQYPRSRIDV 123

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV 453
             EI ++DGS+ +A++  +SLAL DAG+
Sbjct: 124 FIEIIQADGSTRVASLTAASLALADAGI 151



 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+  G +   +DG+ + +YG T  +A V   R +       P    + V Y    ++
Sbjct: 24  REVKISVG-VVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
                    R+   P+  EI IS+++  ++ P  L  +  ++   V I ++Q D   S  
Sbjct: 83  TKD-----ERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQAD--GSTR 135

Query: 128 VVSMVAASAALMLSGL 143
           V S+ AAS AL  +G+
Sbjct: 136 VASLTAASLALADAGI 151


>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG5E24]
          Length = 245

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           V+LD+  +R DGR     R ++ +VG+L+   GS+ +I      I+    G R+   +  
Sbjct: 9   VLLDENGIRSDGRKVNETRKVTIKVGVLKNADGSA-YIEFGGNKILAGVFGPRD--VHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
            +S        + Y+  P +  E  +  APSRREI   ++ + A+ P +    +FP T +
Sbjct: 66  HMSNPDTGILRVRYHMEPFSVSE-RKNPAPSRREIEISKVLKEALEPAV-ILEKFPRTAI 123

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+ ++DG +  A +  +S+AL DAG+P+   V   A G   D     ++ D++ +E
Sbjct: 124 DVYLEVLQADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKAAD----TLILDVNNEE 179

Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506
           D  G  D  +    +   IT +Q+D
Sbjct: 180 DQAGQADMPIGYMPNFGKITLLQLD 204



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 18/203 (8%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYL 78
           + + +DG+    +G   +LA V   R +       P    L V Y    ++V +      
Sbjct: 35  VLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFSVSE------ 88

Query: 79  RRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D        ++ AAS 
Sbjct: 89  RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD--GGTRCAALDAASV 146

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD--AVLMVELEAN 193
           AL  +G+P    V            +L+   +EDQ G  D+ +    +   + +++L+  
Sbjct: 147 ALADAGIPMRDMVCSCAAGKAADTLILDVNNEEDQAGQADMPIGYMPNFGKITLLQLDG- 205

Query: 194 QLSEDVVLDAIIFGHNECKPVIE 216
            L+ D     I  G   CK V E
Sbjct: 206 VLTTDEFKKCIELGIEGCKQVYE 228


>gi|118443587|ref|YP_877456.1| 30S ribosomal protein S1 [Clostridium novyi NT]
 gi|118134043|gb|ABK61087.1| rpsA [Clostridium novyi NT]
          Length = 387

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +VN I +G+VVK++DFGAFV   G  +GLVHI++++ E +AK SDV+K+GD V VK+L+ 
Sbjct: 284 KVNDIVEGKVVKLLDFGAFVEILGGVEGLVHITEITDENIAKPSDVLKKGDKVKVKILEI 343

Query: 678 DDRGK-IKLSMKVVDQNTGKPI 698
           ++  K I LS+K  +    + I
Sbjct: 344 NENDKRIALSIKDAENKVAEEI 365



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683
           G V ++  FGAFV   G  DGL+H S LS ERV   SDVVK GD V V +LDF  D GKI
Sbjct: 206 GVVRRLAKFGAFVDLGGV-DGLIHNSDLSWERVNNPSDVVKVGDKVEVYVLDFHKDTGKI 264

Query: 684 KLSMKVVDQN 693
            LS+K V+++
Sbjct: 265 ALSLKNVEED 274


>gi|220929150|ref|YP_002506059.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium cellulolyticum H10]
 gi|219999478|gb|ACL76079.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           cellulolyticum H10]
          Length = 672

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 3/97 (3%)

Query: 594 KIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K+  S+   IE  +E   S I D  E+ K YKGQV  +MDFGAFV   G  DGLVH+S+L
Sbjct: 449 KVVGSARILIEKNKEAASSLIWDSIEIGKTYKGQVKSLMDFGAFVDIGGV-DGLVHLSEL 507

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S  ++   S+VVK GD + V +LDFD ++ +I L  K
Sbjct: 508 SWNKIRHPSEVVKVGDEIIVSVLDFDKEKKRISLGYK 544



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+VV+++ FGAFV      DGLVHISQ+S+ R+ K  D +K G  V  K+++F
Sbjct: 559 QVGNVVSGKVVRLVPFGAFVELEEGIDGLVHISQISSVRLGKPGDALKVGQQVDAKIIEF 618

Query: 678 D-DRGKIKLSMKVVD 691
           D +  KI LS+K V+
Sbjct: 619 DTESKKISLSIKEVN 633


>gi|254582208|ref|XP_002497089.1| ZYRO0D15180p [Zygosaccharomyces rouxii]
 gi|238939981|emb|CAR28156.1| ZYRO0D15180p [Zygosaccharomyces rouxii]
          Length = 1103

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           P +NKIY G++  +  FG FV   G +    DGLVHIS+++  RV +  D+V+ G  V++
Sbjct: 178 PILNKIYPGRIKNITAFGCFVQIHGTQEKNSDGLVHISEMTNHRVRRPQDLVQLGQEVFI 237

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K++     G + LSMK +DQ TG+ I
Sbjct: 238 KVIKLQKNGNVSLSMKNIDQLTGQEI 263


>gi|242041913|ref|XP_002468351.1| hypothetical protein SORBIDRAFT_01g044300 [Sorghum bicolor]
 gi|241922205|gb|EER95349.1| hypothetical protein SORBIDRAFT_01g044300 [Sorghum bicolor]
          Length = 1242

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE+ ++Y+G+V +VMD G FV      G  +GLVH+SQ+++ RVA   +VVK    V+VK
Sbjct: 283 PELYEVYRGRVTRVMDTGCFVRLEDVRGGHEGLVHVSQMASRRVANAKEVVKRDQEVYVK 342

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++    + K+ LSM+ VDQ+TGK ++
Sbjct: 343 VVSVKGQ-KLSLSMRDVDQDTGKDLL 367


>gi|225706462|gb|ACO09077.1| Nucleolar protein of 40 kDa [Osmerus mordax]
          Length = 228

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 5/101 (4%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVA 658
           +AE E A E    +  +P +  I+KG+VV V  +GAFV   G  + GLVH+S++S  RV 
Sbjct: 1   MAEFEEAEE-PGGLDGLPTMYGIFKGEVVSVQTYGAFVKLPGYQKQGLVHVSEMSACRVE 59

Query: 659 KTSDVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGK 696
             S++V  G+ VW+K++     DD+ K+  SMK V+Q TG+
Sbjct: 60  NASEIVDVGEQVWIKVIGKEVRDDKVKLSFSMKAVNQGTGR 100


>gi|332799296|ref|YP_004460795.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Tepidanaerobacter sp. Re1]
 gi|332697031|gb|AEE91488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Tepidanaerobacter sp. Re1]
          Length = 668

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G+VVK+++FGAFV      +GLVHISQ+S E +A   DV+KEGD+V VK+LD D
Sbjct: 563 IGSIIEGKVVKLVNFGAFVEVAPGVEGLVHISQISQEHIANPEDVLKEGDSVKVKILDVD 622

Query: 679 DRGK-IKLSMK 688
            +GK + LS+K
Sbjct: 623 TKGKRMSLSIK 633



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V ++  FGAFV   G  DGL+HIS L+ +++   S++VKE   V V +L  D +R +
Sbjct: 483 KGVVKRLTGFGAFVDIGGV-DGLIHISDLAWQKIKHPSEIVKEEQEVEVLVLKVDKERER 541

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 542 ISLGLKQIMPN 552


>gi|195124361|ref|XP_002006662.1| GI21186 [Drosophila mojavensis]
 gi|193911730|gb|EDW10597.1| GI21186 [Drosophila mojavensis]
          Length = 1260

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668
           ++D PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV    
Sbjct: 294 MSDDPEVGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 353

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           TV VK++    + K+ LSMK VDQ TG+
Sbjct: 354 TVKVKVMSLAGQ-KVSLSMKEVDQETGR 380


>gi|312068671|ref|XP_003137323.1| hypothetical protein LOAG_01737 [Loa loa]
 gi|307767517|gb|EFO26751.1| hypothetical protein LOAG_01737 [Loa loa]
          Length = 693

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEG 667
           R ++  P V  IY G+V+ +  FGAF+   G R   +GL+HISQ+  +RV   SDV+   
Sbjct: 214 RRMSLAPIVGHIYNGRVISIQSFGAFIQLEGLRQRFEGLLHISQIRQDRVNAVSDVLNRN 273

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             V VK++ F + GKI LSMK VDQ TG+
Sbjct: 274 QKVKVKVIKF-ELGKIGLSMKEVDQETGQ 301


>gi|21428730|gb|AAM50025.1| SD07467p [Drosophila melanogaster]
          Length = 1242

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           ++TD PE  KIY G++  ++ FG FV   G R   +GLVHISQL  E RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            TV VK++    + K+ LSMK VDQ++GK
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGK 364


>gi|320593610|gb|EFX06019.1| ATP-dependent RNA helicase dhx8 [Grosmannia clavigera kw1407]
          Length = 1241

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 15/129 (11%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           GK  RG   + G   +  DDG      S   E+E        + D PE+ K+Y G V  +
Sbjct: 222 GKSGRGRANRNG--YDNYDDGNGNDGRSQRKEVE--------VDDAPELFKVYDGHVTGI 271

Query: 631 MDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            DFGAFV+  G R   DGLVH+S L   +RV+  SD++  G  V VK++  +   +I LS
Sbjct: 272 KDFGAFVNLHGIRGKVDGLVHVSALVDGQRVSHPSDLLTMGQKVLVKVVKIEG-SRIGLS 330

Query: 687 MKVVDQNTG 695
           MK VDQ+TG
Sbjct: 331 MKDVDQDTG 339


>gi|20129977|ref|NP_610928.1| peanuts [Drosophila melanogaster]
 gi|7303231|gb|AAF58294.1| peanuts [Drosophila melanogaster]
 gi|201065755|gb|ACH92287.1| FI05376p [Drosophila melanogaster]
          Length = 1242

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           ++TD PE  KIY G++  ++ FG FV   G R   +GLVHISQL  E RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            TV VK++    + K+ LSMK VDQ++GK
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGK 364


>gi|195334242|ref|XP_002033793.1| GM21509 [Drosophila sechellia]
 gi|194125763|gb|EDW47806.1| GM21509 [Drosophila sechellia]
          Length = 1242

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           ++TD PE  KIY G++  ++ FG FV   G R   +GLVHISQL  E RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            TV VK++    + K+ LSMK VDQ++GK
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGK 364


>gi|163915365|gb|AAI57135.1| Unknown (protein for IMAGE:7523839) [Xenopus (Silurana) tropicalis]
          Length = 177

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVW 671
           + ++PE+  I+KG+V  V D+GAF+   G R  GLVH S +S+  V + S+VV  G+ VW
Sbjct: 1   MENLPELYDIFKGEVASVTDYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVW 60

Query: 672 VKLLDF---DDRGKIKLSMKVVDQNTGK 696
           VK++     D + K+ LSMKVV+Q  GK
Sbjct: 61  VKVIGRETKDGKEKVSLSMKVVNQGDGK 88


>gi|62857343|ref|NP_001017183.1| zinc finger, CCHC domain containing 17 [Xenopus (Silurana)
           tropicalis]
 gi|41353967|gb|AAS01425.1| putative S1 RNA binding domain protein [Xenopus (Silurana)
           tropicalis]
 gi|89272111|emb|CAJ81714.1| novel S1 RNA binding domain and zinc knuckle containing protein
           (ortholog of human putative S1 RNA binding domain
           protein PS1D) [Xenopus (Silurana) tropicalis]
          Length = 234

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVW 671
           + ++PE+  I+KG+V  V D+GAF+   G R  GLVH S +S+  V + S+VV  G+ VW
Sbjct: 1   MENLPELYDIFKGEVASVTDYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVW 60

Query: 672 VKLLDF---DDRGKIKLSMKVVDQNTGK 696
           VK++     D + K+ LSMKVV+Q  GK
Sbjct: 61  VKVIGRETKDGKEKVSLSMKVVNQGDGK 88


>gi|307136047|gb|ADN33898.1| ATP-dependent RNA helicase [Cucumis melo subsp. melo]
          Length = 953

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++  PE+  +YKG+V +VMD G FV     R  +GLVH+SQ++T R++   DVVK    V
Sbjct: 263 VSHEPELYTVYKGRVSRVMDTGCFVQLNDFRGKEGLVHVSQIATRRISNAKDVVKRDQEV 322

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +VK++    + K+ LSM+ VDQ++GK ++
Sbjct: 323 YVKVISVSGQ-KLSLSMRDVDQHSGKDLL 350


>gi|316973788|gb|EFV57343.1| ATP-dependent RNA helicase DHX8 [Trichinella spiralis]
          Length = 1176

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDT 669
           + D P V KIY G+V  + DFG FV   G R   +GLVHISQ+  ERV   SDVV  G  
Sbjct: 200 LDDTPTVGKIYDGRVNSLRDFGCFVELFGLRRHVEGLVHISQMKDERVNAVSDVVTRGQK 259

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V VK+L      +  LSM+ VDQ TG+
Sbjct: 260 VKVKVLA-SSGNRTSLSMREVDQETGE 285


>gi|126307880|ref|XP_001363005.1| PREDICTED: similar to pol polyprotein [Monodelphis domestica]
          Length = 1196

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P + +IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 232 RPPPEEPSIGEIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 291

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 292 GQRVKVKVLSFTG-TKTSLSMKDVDQDTGE 320


>gi|254674298|emb|CBA10082.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha275]
          Length = 88

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMD--FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           EV K+Y+G VVK++D   GA V     +DGLVHISQ++ ERV    D ++ G  V VK L
Sbjct: 2   EVAKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKAL 61

Query: 676 DFDDRGKIKLSMK 688
           + DDRG+++LS+K
Sbjct: 62  EVDDRGRVRLSIK 74


>gi|115929959|ref|XP_001193417.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8,
           partial [Strongylocentrotus purpuratus]
          Length = 784

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTE-RVAKTSDVVKEGDTVWVK 673
           PEV ++Y+G+V  VM +G FV     R  +GLVHIS+L  E RVA+ +DVV +G  V VK
Sbjct: 161 PEVGEVYEGKVTSVMQYGCFVQLSLRRRCEGLVHISELRKEGRVAEVTDVVSKGQQVKVK 220

Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696
           +L      KI+LSMK VDQN+G+
Sbjct: 221 VLSIAG-TKIRLSMKDVDQNSGE 242


>gi|224086631|ref|XP_002195343.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           [Taeniopygia guttata]
          Length = 1199

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 235 RPPAEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 294

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 295 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 323


>gi|195058010|ref|XP_001995368.1| GH22675 [Drosophila grimshawi]
 gi|193899574|gb|EDV98440.1| GH22675 [Drosophila grimshawi]
          Length = 1243

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668
           ++D PE  KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV    
Sbjct: 276 LSDDPEAGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 335

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           TV VK++    + K+ LSMK VDQ TG+
Sbjct: 336 TVKVKVMSLAGQ-KVSLSMKEVDQETGR 362


>gi|297282801|ref|XP_001098380.2| PREDICTED: nucleolar protein of 40 kDa isoform 3 [Macaca mulatta]
          Length = 233

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 7/91 (7%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGD 668
           ++ +    E NK+Y   V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD
Sbjct: 1   MKQLIKATEKNKVY---VAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGD 57

Query: 669 TVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696
            VWVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 58  KVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 88


>gi|292619482|ref|XP_002663995.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 3 [Danio rerio]
          Length = 1224

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P V  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 246 RPPPEEPSVADIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 305

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 306 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 334


>gi|195485854|ref|XP_002091261.1| GE13554 [Drosophila yakuba]
 gi|194177362|gb|EDW90973.1| GE13554 [Drosophila yakuba]
          Length = 1242

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           ++TD PE  KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            TV VK++    + K+ LSMK VDQ++G+
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGR 364


>gi|292619478|ref|XP_002663993.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Danio rerio]
          Length = 1210

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P V  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 246 RPPPEEPSVADIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 305

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 306 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 334


>gi|118107064|ref|XP_423195.2| PREDICTED: similar to DHX8 protein [Gallus gallus]
          Length = 720

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 193 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 252

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 253 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 281


>gi|268531160|ref|XP_002630706.1| C. briggsae CBR-MOG-5 protein [Caenorhabditis briggsae]
          Length = 1205

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +V EV KIY G+V  +  FGAF+   G R   +GLVHISQ+  ERV   +DV+K G  V 
Sbjct: 235 EVAEVGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIKNERVQSVADVLKRGQAVK 294

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696
           VK+   ++ GK   +MK VDQ TG+
Sbjct: 295 VKVNKIEN-GKTSFTMKEVDQQTGE 318


>gi|115628185|ref|XP_799263.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8,
           partial [Strongylocentrotus purpuratus]
          Length = 667

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTE-RVAKTSDVVKEGDTVWVK 673
           PEV ++Y+G+V  VM +G FV     R  +GLVHIS+L  E RVA+ +DVV +G  V VK
Sbjct: 161 PEVGEVYEGKVTSVMQYGCFVQLSLRRRCEGLVHISELRKEGRVAEVTDVVSKGQQVKVK 220

Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696
           +L      KI+LSMK VDQN+G+
Sbjct: 221 VLSIAG-TKIRLSMKDVDQNSGE 242


>gi|309365279|emb|CAP24120.2| CBR-MOG-5 protein [Caenorhabditis briggsae AF16]
          Length = 1220

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +V EV KIY G+V  +  FGAF+   G R   +GLVHISQ+  ERV   +DV+K G  V 
Sbjct: 235 EVAEVGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIKNERVQSVADVLKRGQAVK 294

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696
           VK+   ++ GK   +MK VDQ TG+
Sbjct: 295 VKVNKIEN-GKTSFTMKEVDQQTGE 318


>gi|255717010|ref|XP_002554786.1| KLTH0F13772p [Lachancea thermotolerans]
 gi|238936169|emb|CAR24349.1| KLTH0F13772p [Lachancea thermotolerans]
          Length = 1114

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD----GLVHISQLSTERVAKTSDVVKEGDTVWV 672
           P ++KIY G V K++ FG FV   G +D    GLVHIS+++  R+   S+VV  G  V+V
Sbjct: 176 PAIDKIYPGVVRKLVGFGCFVRISGTKDPRCDGLVHISEMADRRINDPSEVVSLGQRVFV 235

Query: 673 KLLDFDDRGKIKLSMKVVDQNTG 695
           K++     GKI L +K ++QNTG
Sbjct: 236 KVIKVQKNGKISLRLKNINQNTG 258


>gi|118102879|ref|XP_418105.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           [Gallus gallus]
          Length = 1076

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 228 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 287

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 288 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 316


>gi|326202127|ref|ZP_08191997.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987922|gb|EGD48748.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           papyrosolvens DSM 2782]
          Length = 672

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 3/97 (3%)

Query: 594 KIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K+  S+   IE  +E   S I +  E+ K YKGQV  +MDFGAFV   G  DGLVH+S+L
Sbjct: 449 KVVGSARILIEKNKEAASSVIWNSIEIGKTYKGQVKSLMDFGAFVDIGGV-DGLVHLSEL 507

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S  ++   S+VVK GD + V +LDFD ++ +I L  K
Sbjct: 508 SWSKIKHPSEVVKVGDEIIVSVLDFDKEKKRISLGYK 544



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+VV+++ FGAFV      DGLVHISQ+S+ R+ K  D +  G  V  K+++F
Sbjct: 559 QVGNVATGKVVRLVPFGAFVELEEGIDGLVHISQISSVRLGKPGDALTVGQQVEAKIIEF 618

Query: 678 D-DRGKIKLSMKVVD 691
           D +  KI LS+K V+
Sbjct: 619 DAETKKISLSIKEVN 633


>gi|327275335|ref|XP_003222429.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Anolis
           carolinensis]
          Length = 1186

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 223 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 282

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 283 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 311


>gi|327275337|ref|XP_003222430.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 2 [Anolis
           carolinensis]
          Length = 1180

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 217 RPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 276

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ+TG+
Sbjct: 277 GQRVKVKVLSFTG-SKTSLSMKDVDQDTGE 305


>gi|156551057|ref|XP_001606022.1| PREDICTED: similar to CG8241-PA [Nasonia vitripennis]
          Length = 1230

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVK 673
           EV KIY G+V  V+ FG FV   G R   +GLVHISQL  E RV   SDVV  G+ V+VK
Sbjct: 274 EVGKIYTGKVANVVPFGCFVQLDGLRKRSEGLVHISQLRREGRVVNASDVVTRGEKVFVK 333

Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695
           +L+   + K+ LSMK VDQ +G
Sbjct: 334 VLNITGQ-KVSLSMKDVDQESG 354


>gi|302306315|ref|NP_982561.2| AAR020Wp [Ashbya gossypii ATCC 10895]
 gi|299788458|gb|AAS50385.2| AAR020Wp [Ashbya gossypii ATCC 10895]
          Length = 1111

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            P   KIY+  +  +  FG F    G +   +GL+HISQLS  RV   +DVV  GD V+V
Sbjct: 179 TPIEGKIYRAVIRNIKPFGCFARVLGTKRSCEGLIHISQLSHSRVGSPNDVVSVGDHVYV 238

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+    D GK+ LSM+ VDQ TG+
Sbjct: 239 KITKVQDNGKLSLSMREVDQATGQ 262


>gi|170940268|emb|CAP65495.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1151

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEG 667
           R + D P++NK+Y G V  V DFGAFV+  G +   DGLVHIS    +RV    DVV  G
Sbjct: 199 RDLDDTPQLNKVYDGHVTGVKDFGAFVNIHGVKGKVDGLVHISAFG-QRVNHPEDVVTRG 257

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             V VK++  +   ++ LSMK +DQ TG
Sbjct: 258 QNVKVKVVKIEG-NRVGLSMKDIDQETG 284


>gi|114555239|ref|XP_001158675.1| PREDICTED: similar to ZCCHC17 protein isoform 4 [Pan troglodytes]
 gi|114555241|ref|XP_001158730.1| PREDICTED: nucleolar protein of 40 kDa isoform 5 [Pan troglodytes]
 gi|119628025|gb|EAX07620.1| zinc finger, CCHC domain containing 17, isoform CRA_a [Homo
           sapiens]
 gi|119628027|gb|EAX07622.1| zinc finger, CCHC domain containing 17, isoform CRA_a [Homo
           sapiens]
 gi|194379268|dbj|BAG63600.1| unnamed protein product [Homo sapiens]
          Length = 233

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 7/83 (8%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E NK+Y   V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+ 
Sbjct: 9   EKNKVY---VAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 65

Query: 677 F---DDRGKIKLSMKVVDQNTGK 696
               +DR K+ LSMKVV+Q TGK
Sbjct: 66  REMKNDRIKVSLSMKVVNQGTGK 88


>gi|76636632|ref|XP_873064.1| PREDICTED: zinc finger, CCHC domain containing 17 [Bos taurus]
 gi|297483790|ref|XP_002693879.1| PREDICTED: zinc finger, CCHC domain containing 17-like [Bos taurus]
 gi|296479473|gb|DAA21588.1| zinc finger, CCHC domain containing 17-like [Bos taurus]
          Length = 237

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 4/89 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ ++P +  I++G+V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD V
Sbjct: 8   TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKV 67

Query: 671 WVKLLDF---DDRGKIKLSMKVVDQNTGK 696
            VKL+     DDR K+ LSMKVVDQ T K
Sbjct: 68  CVKLIGREMKDDRIKVSLSMKVVDQGTVK 96


>gi|301119357|ref|XP_002907406.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4]
 gi|262105918|gb|EEY63970.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4]
          Length = 1158

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCG----ARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           E+  IY G+V KVMDFG FV   G     ++GLVH+S LS  RV+   +  K GD V VK
Sbjct: 199 ELYGIYDGRVAKVMDFGVFVELEGFSREKKEGLVHVSNLSANRVSNVKEFAKRGDRVKVK 258

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           L+      K+ +SM+ VDQ TGK ++
Sbjct: 259 LISISG-AKLSMSMRDVDQRTGKDLM 283


>gi|2275200|gb|AAB63822.1| putative polyribonucleotide phosphorylase [Arabidopsis thaliana]
          Length = 171

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+YQE
Sbjct: 21  SVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVHYQE 80

Query: 66  RTYAVGKIPGGYLRRESRPTENEI 89
           R  AVG+  GG+ +RE R  ++E+
Sbjct: 81  RFSAVGRTSGGFFKREGRTKDHEV 104


>gi|194883184|ref|XP_001975683.1| GG20423 [Drosophila erecta]
 gi|190658870|gb|EDV56083.1| GG20423 [Drosophila erecta]
          Length = 1240

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           +++D PE  KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV   
Sbjct: 275 AMSDDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 334

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            TV VK++    + K+ LSMK VDQ++GK
Sbjct: 335 QTVKVKVMTITGQ-KVSLSMKEVDQDSGK 362


>gi|47216140|emb|CAG10014.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 241

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVA 658
           +++ +  R     +  +P +  I KG+VV V  +GAFV   G  ++GLVH+S++S  RV 
Sbjct: 1   MSDSDGQRPEPAGLEGLPPMYSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVE 60

Query: 659 KTSDVVKEGDTVWVKLLDFDDRG---KIKLSMKVVDQNTGK 696
             S++V  G+ VW+K++  + RG   K+  SMK V+Q TG+
Sbjct: 61  NASEIVDVGEQVWIKVIGREIRGDKVKLSFSMKAVNQGTGR 101


>gi|307110751|gb|EFN58986.1| hypothetical protein CHLNCDRAFT_137613 [Chlorella variabilis]
          Length = 1006

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGD 668
           + D PE+  +Y+G+V  VMDFG FV   G R   +GLVH+S + ST+R     D+V +GD
Sbjct: 212 LPDEPEMYGVYRGRVTGVMDFGCFVELQGFRTKQEGLVHLSNISSTKRAGSAKDMVGKGD 271

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            VWVK++    + ++ L+M+ VDQ TG+ ++
Sbjct: 272 PVWVKIVSKTGQ-RLGLAMRDVDQVTGEDLL 301


>gi|332254546|ref|XP_003276390.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 2 [Nomascus
           leucogenys]
          Length = 232

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 7/83 (8%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E NK+Y   V  V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+ 
Sbjct: 9   EKNKVY---VAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG 65

Query: 677 F---DDRGKIKLSMKVVDQNTGK 696
               +DR K+ LSMKVV+Q TGK
Sbjct: 66  REMKNDRIKVSLSMKVVNQGTGK 88


>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
 gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
          Length = 236

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 15/226 (6%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++K+R DGR  + +R I  + G+L+R  GS+    G  + I+    G RE   Y+  L  
Sbjct: 8   NEKLRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNK-ILASVYGPRE--SYIRRLLK 64

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS- 427
                  + YN  P +  +  R G P RR     ++A  A+ P L     FP ++  VS 
Sbjct: 65  PNTGVIRVRYNMAPFSVDDRKRPG-PDRRSTEISKIAADALRPAL-MLESFPRSMVDVSI 122

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E++G +  A +  +++AL DAG+P+   V G A G V D     I+ D+S  ED  G
Sbjct: 123 EVIEAEGGTRCAGITAAAVALADAGIPMKDIVVGCAAGKVNDE----IVLDLSEKEDKEG 178

Query: 488 HMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             D  +A       IT +Q D   G ++E     AL  A  G + I
Sbjct: 179 QADVPIAIMPRTGEITLLQAD---GNLTEEEFEEALDLAIEGCMKI 221


>gi|74209213|dbj|BAE24985.1| unnamed protein product [Mus musculus]
          Length = 1244

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG+FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 280 RPPPEEPAIGDIYNGKVTSIMQFGSFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 339

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 340 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 368


>gi|299116904|emb|CBN75014.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 643

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 6/87 (6%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +PEV  ++KG+VVK   FGAF+   G R  GLVH SQ+++ RV   +DV K GDTV+ K+
Sbjct: 234 LPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKV 293

Query: 675 LDFDDRG-----KIKLSMKVVDQNTGK 696
           ++  D       +I LSMK+V+Q  GK
Sbjct: 294 IEVTDGADPREQRIALSMKLVNQADGK 320


>gi|212638920|ref|YP_002315440.1| 30S ribosomal protein S1 [Anoxybacillus flavithermus WK1]
 gi|212560400|gb|ACJ33455.1| Ribosomal protein S1 [Anoxybacillus flavithermus WK1]
          Length = 386

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G VV++ +FGAFV+  G  DGLVHISQLS  RV   SDVVKEGD V VK+L  
Sbjct: 193 QVGQVLEGTVVRMTNFGAFVNI-GEVDGLVHISQLSHARVDHPSDVVKEGDVVKVKVLAI 251

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LSMK
Sbjct: 252 DEESGRVSLSMK 263



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V ++  FGAFV      +GLVHISQ+ST+ +    +V+KEGD V VK+L  +++ 
Sbjct: 282 VLEGTVKRLAPFGAFVEVFPGVEGLVHISQISTKHIGAPHEVLKEGDVVKVKVLAVNEQE 341

Query: 682 KIKLSMKV 689
           K +LS+ +
Sbjct: 342 K-RLSLSI 348



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKT 660
           E+    EM +    V EV    KGQV KV D    +   G++  G++ IS+LS+  + K 
Sbjct: 5   EVFTMEEMNQVDVRVYEVGDTVKGQVTKVEDKQVLIDVEGSKLVGIIPISELSSLHIEKA 64

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           SDV+  GD V  K+   +D   I LS K  D
Sbjct: 65  SDVLSVGDAVVAKVKKVEDEALI-LSKKAAD 94


>gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
 gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
          Length = 241

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 21/200 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR +  +R +    G+++  HGS L   GDT+ +   T+    +E       G +  
Sbjct: 8   RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATI----EEGVPGWRKGAKAG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +TG+  +    +R  R +   RL  R++  V+   A   YT+ +  ++ 
Sbjct: 64  WVTAEYAMLPASTGKRCKREYANRKGRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVI 123

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL DA            +P++  VA I+MG+V DG+  +   D+
Sbjct: 124 QADGGTRTASITGAWVALHDALAMWVEAGKIERIPLTGQVAAISMGVV-DGNTML---DL 179

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
              ED    +D  +  TD+G
Sbjct: 180 DYSEDSHAEVDMNLVATDTG 199


>gi|114666961|ref|XP_001153951.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 1 [Pan
           troglodytes]
          Length = 1007

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|42570002|ref|NP_182244.2| 3' exoribonuclease family domain 1 protein-related [Arabidopsis
           thaliana]
 gi|330255721|gb|AEC10815.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 469

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+YQE
Sbjct: 21  SVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVHYQE 80

Query: 66  RTYAVGKIPGGYLRRESRPTENEI 89
           R  AVG+  GG+ +RE R  ++E+
Sbjct: 81  RFSAVGRTSGGFFKREGRTKDHEV 104


>gi|296201537|ref|XP_002748076.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1
           [Callithrix jacchus]
          Length = 1216

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 252 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 311

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 312 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 340


>gi|119572063|gb|EAW51678.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_c [Homo
           sapiens]
          Length = 1007

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|193657113|ref|XP_001946838.1| PREDICTED: nucleolar protein of 40 kDa-like [Acyrthosiphon pisum]
          Length = 227

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +N I+ G+V  V ++GAF+   G +  GLVH +QLS   V   +DV+ +GD +W K++ 
Sbjct: 4   NINDIFIGEVSSVQNYGAFIRIPGNKQQGLVHRTQLSRVPVDDATDVLSKGDKIWAKVIG 63

Query: 677 FDDRGKIKLSMKVVDQNTGK 696
            DD GKI LSMK+VDQ +G+
Sbjct: 64  MDD-GKISLSMKLVDQGSGR 82


>gi|149054338|gb|EDM06155.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Rattus norvegicus]
          Length = 1242

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 278 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 337

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 338 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 366


>gi|119572061|gb|EAW51676.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_a [Homo
           sapiens]
          Length = 952

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|60360134|dbj|BAD90286.1| mKIAA4096 protein [Mus musculus]
          Length = 1264

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 300 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 359

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 360 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 388


>gi|308801349|ref|XP_003077988.1| Polyribonucleotide nucleotidyltransferase (ISS) [Ostreococcus
           tauri]
 gi|116056439|emb|CAL52728.1| Polyribonucleotide nucleotidyltransferase (ISS) [Ostreococcus
           tauri]
          Length = 126

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           M+ ++T   EV KIY+  QV K+++FG FV F    +GLVHIS+L   RV   SDV  EG
Sbjct: 1   MVAALTVEAEVGKIYRNCQVKKIVEFGCFVEFLPGMEGLVHISELDVSRVPNVSDVTAEG 60

Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690
             + VK+++ ++RG+ +LS K V
Sbjct: 61  ALLDVKVIEINNRGQTRLSRKEV 83


>gi|296201539|ref|XP_002748077.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 2
           [Callithrix jacchus]
          Length = 1177

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 252 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 311

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 312 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 340


>gi|114666953|ref|XP_001154075.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 3 [Pan
           troglodytes]
          Length = 1181

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|301768709|ref|XP_002919800.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Ailuropoda
           melanoleuca]
          Length = 1253

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 289 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 348

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 349 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 377


>gi|56699440|ref|NP_659080.2| ATP-dependent RNA helicase DHX8 [Mus musculus]
 gi|187471036|sp|A2A4P0|DHX8_MOUSE RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH
           box protein 8
 gi|123236581|emb|CAM22647.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|123239591|emb|CAM24250.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|124376748|gb|AAI32446.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|148702118|gb|EDL34065.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
          Length = 1244

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 280 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 339

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 340 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 368


>gi|221044526|dbj|BAH13940.1| unnamed protein product [Homo sapiens]
          Length = 1181

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|127801176|gb|AAH44586.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens]
          Length = 1220

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|127797813|gb|AAH47327.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens]
          Length = 1220

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|194376504|dbj|BAG57398.1| unnamed protein product [Homo sapiens]
          Length = 854

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 165 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 224

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 225 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 253


>gi|114666959|ref|XP_001154016.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 2 [Pan
           troglodytes]
          Length = 1129

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 165 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 224

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 225 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 253


>gi|197102406|ref|NP_001126950.1| ATP-dependent RNA helicase DHX8 [Pongo abelii]
 gi|55733262|emb|CAH93314.1| hypothetical protein [Pongo abelii]
          Length = 1127

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 163 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 222

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 223 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 251


>gi|4826690|ref|NP_004932.1| ATP-dependent RNA helicase DHX8 [Homo sapiens]
 gi|114666955|ref|XP_001154202.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 5 [Pan
           troglodytes]
 gi|3023637|sp|Q14562|DHX8_HUMAN RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH
           box protein 8; AltName: Full=RNA helicase HRH1
 gi|807817|dbj|BAA09078.1| RNA helicase [Homo sapiens]
 gi|119572062|gb|EAW51677.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_b [Homo
           sapiens]
 gi|168275648|dbj|BAG10544.1| ATP-dependent RNA helicase DHX8 [synthetic construct]
          Length = 1220

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 705

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G+VV+ ++FGAF+      +GL HISQLS + VAKT DVV EGD V VK+L  DD +
Sbjct: 587 IVQGKVVRTVNFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQ 646

Query: 681 GKIKLSMK 688
            K+ LS+K
Sbjct: 647 KKVSLSIK 654



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V ++ DFGAF+   G  DGL HISQ+S  R+      ++ G+ V VK+L  D + 
Sbjct: 502 IVDGTVKRLTDFGAFIDI-GGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPEN 560

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 561 ERISLSIK 568


>gi|158256760|dbj|BAF84353.1| unnamed protein product [Homo sapiens]
          Length = 1220

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|119572065|gb|EAW51680.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_e [Homo
           sapiens]
          Length = 1169

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|281354218|gb|EFB29802.1| hypothetical protein PANDA_008429 [Ailuropoda melanoleuca]
          Length = 1219

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 255 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 314

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 315 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 343


>gi|194216852|ref|XP_001491740.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           isoform 2 [Equus caballus]
          Length = 1226

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 262 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 321

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 322 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 350


>gi|329663394|ref|NP_001193020.1| ATP-dependent RNA helicase DHX8 [Bos taurus]
 gi|297487152|ref|XP_002696080.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus]
 gi|296476265|gb|DAA18380.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus]
          Length = 1218

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 254 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 313

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 314 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 342


>gi|123236580|emb|CAM22646.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|123239590|emb|CAM24249.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
          Length = 1175

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 227 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 286

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 287 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 315


>gi|311267143|ref|XP_003131427.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Sus scrofa]
          Length = 1158

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 248 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 307

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 308 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 336


>gi|114145427|ref|NP_001041309.1| ATP-dependent RNA helicase DHX8 [Rattus norvegicus]
 gi|37654286|gb|AAQ96248.1| LRRGT00035 [Rattus norvegicus]
          Length = 1210

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 225 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 284

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 285 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 313


>gi|73965615|ref|XP_537627.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           isoform 1 [Canis familiaris]
          Length = 1216

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 252 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 311

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 312 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 340


>gi|229543987|ref|ZP_04433046.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229325126|gb|EEN90802.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 378

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           V +D+D   ++  S  A +E  +E  R  I D  E  ++ +G V ++  FGAFV   G  
Sbjct: 153 VELDEDKN-RLILSHRAVVEKEKEEKRQDILDHLEAGQVLEGTVQRLTSFGAFVDIGGI- 210

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DGLVHISQL+ ERV   SDVV+EG+ V VK+L  D D G+I LS+K
Sbjct: 211 DGLVHISQLAHERVETPSDVVQEGEQVKVKVLSVDRDNGRISLSIK 256



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V +++ FGAFV      +GLVHISQ+S + V+   +V++EG  V VK+LD +++ 
Sbjct: 275 VLTGTVKRLVSFGAFVEVFPGVEGLVHISQISHKHVSTPHEVLREGQEVQVKVLDVNEQA 334

Query: 682 -KIKLSMKVVDQ 692
            ++ LSMK ++Q
Sbjct: 335 HRLSLSMKELEQ 346


>gi|73965613|ref|XP_857363.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           isoform 3 [Canis familiaris]
          Length = 1163

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 199 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 258

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 259 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 287


>gi|114666957|ref|XP_001154148.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 4 [Pan
           troglodytes]
          Length = 1142

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 256 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 315

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ TG+
Sbjct: 316 GQRVKVKVLSFTG-TKTSLSMKDVDQETGE 344


>gi|325115120|emb|CBZ50676.1| putative S1 RNA-binding domain containing protein [Neospora caninum
           Liverpool]
          Length = 390

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAA-REMIRSI---------TDVPEVNKIYKGQVVKVMDF 633
           KV   +DG +++   S+ + +   RE +R              PE++ I++G V ++ DF
Sbjct: 101 KVLSQEDGKLRLCMKSVNQHDGTERESLRQTFSHRGEGGGIKTPELDSIHQGTVRRIQDF 160

Query: 634 GAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           GAFV   G  RDGL+HIS +S++++ +  DV+  GD VWVK+   +  GK  L M+ + Q
Sbjct: 161 GAFVSIDGFDRDGLLHISCISSQKLDRVDDVLAVGDKVWVKVTKVEAGGKYGLDMRGISQ 220

Query: 693 NTG 695
             G
Sbjct: 221 KDG 223



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ++GL+HIS++S +RV    DV+  G  +WVK+L  +D GK++L MK V+Q+ G
Sbjct: 71  KEGLLHISRISDQRVENVEDVLAVGQEIWVKVLSQED-GKLRLCMKSVNQHDG 122


>gi|195380363|ref|XP_002048940.1| GJ21042 [Drosophila virilis]
 gi|194143737|gb|EDW60133.1| GJ21042 [Drosophila virilis]
          Length = 1267

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668
           ++D PE+ KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV    
Sbjct: 301 MSDDPELGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 360

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           TV VK++    + K+ LSMK VDQ +G+
Sbjct: 361 TVKVKVMSLTGQ-KVSLSMKEVDQESGR 387


>gi|156551017|ref|XP_001600416.1| PREDICTED: similar to putative S1 RNA binding domain protein
           [Nasonia vitripennis]
          Length = 260

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           +VN+I+ G++  V ++GAFV   G  + GLVH SQ+S+  V    +V++ G+ +W K++ 
Sbjct: 5   QVNQIFLGEISSVQNYGAFVKIPGCPQQGLVHRSQVSSAHVDDVGEVLQRGERIWCKVIS 64

Query: 677 FDDRGKIKLSMKVVDQNTGK 696
             + GKI LSMK+V+Q  GK
Sbjct: 65  IGEDGKIALSMKLVNQGNGK 84


>gi|327286703|ref|XP_003228069.1| PREDICTED: nucleolar protein of 40 kDa-like [Anolis carolinensis]
          Length = 232

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 4/84 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           PE+  I++G+V  V D+GAF+   G ++ GLVH S +S  RV   S++V  G+ VWVKL+
Sbjct: 5   PELYDIFQGEVASVTDYGAFIKIPGTSKQGLVHKSHMSHCRVDIPSELVDVGEKVWVKLI 64

Query: 676 ---DFDDRGKIKLSMKVVDQNTGK 696
                D++ K  LSMKVV+Q TGK
Sbjct: 65  GKEKTDNKLKFSLSMKVVNQGTGK 88


>gi|170050956|ref|XP_001861545.1| ATP-dependent RNA helicase DHX8 [Culex quinquefasciatus]
 gi|167872422|gb|EDS35805.1| ATP-dependent RNA helicase DHX8 [Culex quinquefasciatus]
          Length = 1253

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTE-RVAKTSDVVKE 666
           R + + PE  +IY G+VV ++ FG FV    F   ++GLVHISQLS+E RV   +DVV  
Sbjct: 272 RQMPEEPEPGQIYNGRVVNIVAFGCFVQLTDFRRKKEGLVHISQLSSEGRVNTVTDVVNR 331

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            D V VK++      KI L MK VDQ +GK
Sbjct: 332 NDNVKVKVISIAG-SKISLCMKDVDQESGK 360


>gi|194754421|ref|XP_001959493.1| GF12026 [Drosophila ananassae]
 gi|190620791|gb|EDV36315.1| GF12026 [Drosophila ananassae]
          Length = 1251

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 5/89 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           ++TD PE  KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV   
Sbjct: 286 AMTDDPEAGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVSRN 345

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             V VK++    + K+ LSMK VDQ +G+
Sbjct: 346 QAVKVKVMSITGQ-KVSLSMKEVDQESGR 373


>gi|115677377|ref|XP_001203156.1| PREDICTED: similar to ZCCHC17 protein [Strongylocentrotus
           purpuratus]
 gi|115712946|ref|XP_787656.2| PREDICTED: similar to ZCCHC17 protein [Strongylocentrotus
           purpuratus]
          Length = 232

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKL 674
           P +  IYKG+V  +  +GAFV   G  ++GLVH SQ+S T+RV   S+V+  GD VW K+
Sbjct: 5   PALYNIYKGEVASIQSYGAFVKLDGYKKNGLVHKSQISRTKRVEDVSEVLSVGDIVWSKV 64

Query: 675 LDF--DDRGKIKLSMKVVDQNTGKPI 698
           +    D+  KI LSMKVV+Q+ G+ +
Sbjct: 65  ISLGEDEEMKISLSMKVVNQDNGQDL 90


>gi|159164517|pdb|2EQS|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human
           Atp-Dependent Rna Helicase Dhx8
          Length = 103

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +G  V V
Sbjct: 10  PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKV 69

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K+L F    K  LSMK VDQ TG+ +
Sbjct: 70  KVLSFTGT-KTSLSMKDVDQETGEDL 94


>gi|323456777|gb|EGB12643.1| hypothetical protein AURANDRAFT_18668 [Aureococcus anophagefferens]
          Length = 269

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 46/75 (61%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +++G V ++  FG FV   G  DGL H+SQ+   RV    DVV  G+ V VK+++  D G
Sbjct: 40  VHRGTVARIQPFGCFVRIEGFGDGLCHVSQMCAYRVEDPKDVVDVGEAVRVKVVEHKDAG 99

Query: 682 KIKLSMKVVDQNTGK 696
           K  LSMK VDQ TG+
Sbjct: 100 KYSLSMKAVDQATGE 114


>gi|229828596|ref|ZP_04454665.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
           14600]
 gi|229793190|gb|EEP29304.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
           14600]
          Length = 294

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           + S+   E E  R   ++  D  EV  I +G V ++ DFGAFV+     DGLVHISQ+S 
Sbjct: 157 VLSARAVEQEKKRLEQQAKLDALEVGSIVEGTVARLKDFGAFVNIADGLDGLVHISQISL 216

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +RV K  D ++ G  V VK+    D GK+ LSMK V+
Sbjct: 217 KRVEKVEDALRVGQKVRVKITGMKD-GKVSLSMKAVE 252


>gi|281357105|ref|ZP_06243595.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548]
 gi|281316663|gb|EFB00687.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548]
          Length = 607

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           SL   +A  +   +I D+ +V  + KG+V K+  FGAFV      DGL+HISQLS +RV 
Sbjct: 471 SLGLKQAETDPWANINDLYKVGDVVKGKVTKIAAFGAFVELTNKIDGLIHISQLSRDRVE 530

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           K  DV+  GD V  +++  D D  +I LS+K V +N
Sbjct: 531 KVKDVLNVGDEVEARVIKVDTDERRIGLSIKAVGEN 566



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           ++  P+ +KI  G+VV +M +GAFV      +GL+H+S++S T+RV+K SDV+  G+ V 
Sbjct: 312 VSKYPKGSKI-NGKVVNIMPYGAFVEIETGVEGLIHVSEMSWTKRVSKASDVLSIGEEVE 370

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
             +LD D D  KI L ++  ++N
Sbjct: 371 AVVLDIDRDSRKISLGLRQKERN 393



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 5/81 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V+++ KG V  + DFGAF+   G  DGL+HI+ +S  R++  S+V+K G+ + V ++  
Sbjct: 231 KVDELRKGVVKNITDFGAFIDLGGV-DGLLHITDISWGRISHPSEVLKVGEEIEVVIIGI 289

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D ++ ++ L +K   Q T  P
Sbjct: 290 DKEKERVSLGLK---QKTRNP 307



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  +  +GAFV      DG++H+S +S T ++   ++V+K G  V   +LD + ++ +
Sbjct: 410 GKVRNMTSYGAFVEIENDIDGMIHVSDMSWTRKINNPNEVLKPGQEVEAIILDINPEQQR 469

Query: 683 IKLSMK 688
           I L +K
Sbjct: 470 ISLGLK 475


>gi|195149686|ref|XP_002015787.1| GL11247 [Drosophila persimilis]
 gi|194109634|gb|EDW31677.1| GL11247 [Drosophila persimilis]
          Length = 1152

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668
           + D PE  KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV    
Sbjct: 188 MADDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 247

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           TV VK++    + K+ LSMK VDQ +G+
Sbjct: 248 TVRVKVMSLTGQ-KVSLSMKEVDQESGR 274


>gi|125807271|ref|XP_001360333.1| GA20923 [Drosophila pseudoobscura pseudoobscura]
 gi|54635505|gb|EAL24908.1| GA20923 [Drosophila pseudoobscura pseudoobscura]
          Length = 1254

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668
           + D PE  KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   ++VV    
Sbjct: 290 MADDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 349

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           TV VK++    + K+ LSMK VDQ +G+
Sbjct: 350 TVRVKVMSLTGQ-KVSLSMKEVDQESGR 376


>gi|189205919|ref|XP_001939294.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975387|gb|EDU42013.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1214

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKT 660
           E  R     + D P + KIY G+V  + DFG FV+  G +   DGLVH++Q+   RV   
Sbjct: 233 EFRRPPTPELDDEPVLYKIYNGKVTGIKDFGCFVNIQGVKGKVDGLVHVTQMMEGRVNHP 292

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           SD+V     V VK++  ++ G+I LSMK VDQ TG+
Sbjct: 293 SDLVSRWQEVKVKVIKTEN-GRISLSMKEVDQQTGR 327


>gi|256083123|ref|XP_002577799.1| ATP-dependent RNA Helicase [Schistosoma mansoni]
 gi|238663131|emb|CAZ34037.1| ATP-dependent RNA Helicase, putative [Schistosoma mansoni]
          Length = 1569

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVK 665
           ++ +   P V  IY+G+V  V+ FGA V   G R   +GLVHISQL  E RVA   DVV 
Sbjct: 570 LKDLPSEPVVGDIYRGRVTNVLAFGAVVQLDGLRKRWEGLVHISQLRQEGRVASVGDVVN 629

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
               VWVK++ F    +  LSM+ VDQ TG
Sbjct: 630 RNQKVWVKVISFTG-TRTGLSMREVDQETG 658


>gi|164658227|ref|XP_001730239.1| hypothetical protein MGL_2621 [Malassezia globosa CBS 7966]
 gi|159104134|gb|EDP43025.1| hypothetical protein MGL_2621 [Malassezia globosa CBS 7966]
          Length = 1152

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 12/94 (12%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQL--------STERVAKTSDVVK 665
           P +NK+Y G+V  V DFGAFV      G RDGLVHIS L        +T R++  SDVV 
Sbjct: 165 PVLNKVYYGRVSGVKDFGAFVTLDGVAGRRDGLVHISALCSNTARGGNTGRISHPSDVVS 224

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            GD V VK++    + +I LSM+ VDQ TG+ +V
Sbjct: 225 RGDHVKVKVISIAGQ-RIGLSMRDVDQVTGRDLV 257


>gi|148225756|ref|NP_001085888.1| MGC80994 protein [Xenopus laevis]
 gi|49118496|gb|AAH73477.1| MGC80994 protein [Xenopus laevis]
          Length = 793

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 212 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 271

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V +K+L F    K  LSMK V+Q+TG+
Sbjct: 272 GQRVKIKVLSFTG-CKTSLSMKDVNQDTGE 300


>gi|297273171|ref|XP_002800602.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Macaca mulatta]
          Length = 1198

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 258 RPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 317

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK VDQ +G+
Sbjct: 318 GQRVKVKVLSFTG-TKTSLSMKDVDQESGE 346


>gi|209731456|gb|ACI66597.1| Nucleolar protein of 40 kDa [Salmo salar]
          Length = 129

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVA 658
           +A+ +  ++    +  +P +  I KG+V  V  +GAF+   G R  GLVHIS+LS  RV 
Sbjct: 1   MADFDHDQQEPAGLDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVE 60

Query: 659 KTSDVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGK 696
             ++VV  G+ VW+K++     DD+ K+  SMK V+Q TGK
Sbjct: 61  NVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGK 101


>gi|260824746|ref|XP_002607328.1| hypothetical protein BRAFLDRAFT_261238 [Branchiostoma floridae]
 gi|229292675|gb|EEN63338.1| hypothetical protein BRAFLDRAFT_261238 [Branchiostoma floridae]
          Length = 226

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++P +N I++G+VV +  +G F+   G R +GLVH SQ+S  RV    +VV  GD V+ K
Sbjct: 18  NLPAMNSIFQGEVVSLQPYGCFIKIPGCRKNGLVHKSQMSASRVEDPKEVVDMGDRVYCK 77

Query: 674 LLDFDD--RGKIKLSMKVVDQNTG 695
           ++   +   GKI LSMKVV+Q  G
Sbjct: 78  VISLGEGGNGKISLSMKVVNQGDG 101


>gi|301605879|ref|XP_002932570.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Xenopus (Silurana)
           tropicalis]
          Length = 1150

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 217 RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 276

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK V+Q+TG+
Sbjct: 277 GQRVKVKVLSFTG-CKTSLSMKDVNQDTGE 305


>gi|313680954|ref|YP_004058693.1| RNA binding s1 domain protein [Oceanithermus profundus DSM 14977]
 gi|313153669|gb|ADR37520.1| RNA binding S1 domain protein [Oceanithermus profundus DSM 14977]
          Length = 126

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G+V +VMDFGAFV   G   GLVHIS+++ E V    D + EGD V V +L  
Sbjct: 4   EAGSIVEGRVTRVMDFGAFVELPGGESGLVHISEIAHEFVKNVRDFLNEGDIVEVFVLGR 63

Query: 678 DDRGKIKLSMK 688
           DD+G++ LS+K
Sbjct: 64  DDKGRLDLSIK 74


>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
 gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
 gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
          Length = 241

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 20/241 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R + AQ+G + +  GS++F  G+T+ I  V  G RE +         Q 
Sbjct: 9   LRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAV-YGPREVQN-----RSQQI 62

Query: 372 NDFMM---HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           ND  +    Y+    +TG+  R     RR      + R+A+   +         + I  +
Sbjct: 63  NDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQ 122

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G 
Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTP----LLDLNYVEDSAGG 178

Query: 489 MDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            D  V        +T +QMD K+     EN+M +A++  K     I N + +VL E+  Q
Sbjct: 179 PDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCK----AIANYIREVLLENTKQ 234

Query: 546 L 546
           L
Sbjct: 235 L 235


>gi|163915380|gb|AAI57174.1| Unknown (protein for IMAGE:7559583) [Xenopus (Silurana) tropicalis]
          Length = 346

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 75  RPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 134

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G  V VK+L F    K  LSMK V+Q+TG+
Sbjct: 135 GQRVKVKVLSFTG-CKTSLSMKDVNQDTGE 163


>gi|39949754|ref|XP_363223.1| hypothetical protein MGG_08807 [Magnaporthe oryzae 70-15]
 gi|145009363|gb|EDJ94074.1| hypothetical protein MGG_08807 [Magnaporthe oryzae 70-15]
          Length = 1207

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + K+Y G V  V DFGAFV+  G +   DGLVH+S L+  +RV+  SD V +G 
Sbjct: 227 LDDTPVLQKVYDGHVTGVKDFGAFVNLHGVKGKVDGLVHVSALTDGQRVSHPSDFVDKGQ 286

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V VK++  +   +I LSMK VDQ TG+
Sbjct: 287 PVKVKVIKIEG-SRIGLSMKEVDQQTGE 313


>gi|229918700|ref|YP_002887346.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229470129|gb|ACQ71901.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 382

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G V ++ DFGAFV   G  DGLVHIS+++  RV K SDVV EGD V VK+L  
Sbjct: 185 EVGQVIEGTVQRLTDFGAFVDIGGV-DGLVHISEMAHSRVEKPSDVVTEGDRVKVKVLGL 243

Query: 678 D-DRGKIKLSMK 688
           D D  K+KLS+K
Sbjct: 244 DLDNEKVKLSIK 255



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD--FDD 679
           + +G V +++ FGAFV      +GL+HISQ++   +A  S+V+ EG  V VK+LD   DD
Sbjct: 274 VIEGTVKRLVTFGAFVEVAPQVEGLLHISQIANRHIATPSEVLSEGQEVKVKVLDVHLDD 333

Query: 680 RGKIKLSMKVVDQN 693
           + KI LSM+ ++ +
Sbjct: 334 K-KISLSMRALESS 346


>gi|296133096|ref|YP_003640343.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola sp. JR]
 gi|296031674|gb|ADG82442.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens
           JR]
          Length = 674

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+VV++  FGAFV      DGLVHISQL+  RVA  S+VV  GD V  K+++ D
Sbjct: 555 VGSIVEGKVVRLAPFGAFVELEPGVDGLVHISQLANRRVANCSEVVSAGDMVKAKVIEVD 614

Query: 679 -DRGKIKLSMKVVDQNT 694
            ++ +I LSMK V++N 
Sbjct: 615 AEKKRISLSMKEVEENN 631



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D   V ++  ++ E EA  +   ++ ++ +  ++ KG V ++ DFGAFV   G  DGL+H
Sbjct: 441 DARKVVLSRKAILEEEAQAKKAETLRNL-QSGQVVKGTVKRLTDFGAFVDI-GGIDGLLH 498

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +S+++  RV   S+VVKEGD + V +LD D +  K+ LS+K V  N
Sbjct: 499 VSEMAWYRVGHPSEVVKEGDQIEVFILDVDKNTEKVSLSLKKVLPN 544


>gi|196475694|gb|ACG76403.1| transcription factor-like 1 (predicted) [Otolemur garnettii]
          Length = 480

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 4/75 (5%)

Query: 626 QVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRG 681
           +V  V D+GAFV   G R  GLVH + +S+ RV K S++V  GD VWVKL+     +DR 
Sbjct: 130 EVAVVTDYGAFVKIPGCRKQGLVHQTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRI 189

Query: 682 KIKLSMKVVDQNTGK 696
           K+ LSMKVV+Q TGK
Sbjct: 190 KVFLSMKVVNQGTGK 204


>gi|85108466|ref|XP_962580.1| ATP-dependent RNA helicase DHX8 [Neurospora crassa OR74A]
 gi|28924189|gb|EAA33344.1| ATP-dependent RNA helicase DHX8 [Neurospora crassa OR74A]
          Length = 1179

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDV 663
           R   R + D P + K+Y+G V  + DFGAFV+  G +   DGLVH+S    +RV   SD+
Sbjct: 195 RPPPREVDDSPILYKVYEGHVTGIKDFGAFVNLHGVKGKVDGLVHVSAFG-QRVNHPSDL 253

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + +G  V VK++  +  G++ LSMK VDQ TG
Sbjct: 254 LSKGQEVKVKVIKLEG-GRVGLSMKDVDQETG 284


>gi|289619705|emb|CBI53988.1| unnamed protein product [Sordaria macrospora]
          Length = 1182

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDV 663
           R  +R   + P + K+Y+G V  + DFGAFV+  G +   DGLVHIS    +RV   SD+
Sbjct: 197 RPPVRETDEAPILYKVYEGHVTGIKDFGAFVNLHGVKGKVDGLVHISAFG-QRVNHPSDL 255

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + +G  V VK++  +  G++ LSMK VDQ TG
Sbjct: 256 LSKGQEVKVKVVKLEG-GRVGLSMKDVDQETG 286


>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
          Length = 240

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +M +  +R+DGR    +R I  Q G+++R  GS+    G  + IV V +     E Y   
Sbjct: 7   LMREDGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYV----REAYPKH 62

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                R      YN    +  E  R G P RR +   ++   A+   +         + +
Sbjct: 63  AQNIDRAIVKARYNMSGYSVEERKRPG-PDRRTMEISKVVSEALSSAIVLEKLPRAEIDV 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ E+D  + +A++  SS+A+ DAGVP+   V G   G     D  I+L D+S DED+
Sbjct: 122 FIQVLEADAGTRIASLTASSVAVADAGVPMRDLVVGCTAG---KADGKIVL-DLSKDEDN 177

Query: 486 LGHMDFKVA 494
            G  D  +A
Sbjct: 178 FGQADIPMA 186



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 17/193 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQ--DFFPLTVNYQERTYAV 70
           RP+K++TG + R +DG+    +G   +++A  V +   K  Q  D   +   Y    Y+V
Sbjct: 24  RPIKIQTGVVER-ADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVKARYNMSGYSV 82

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
            +      R+   P    + IS+++  ++    +  K  + E  V I V++ D  +   +
Sbjct: 83  EE------RKRPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLEAD--AGTRI 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
            S+ A+S A+  +G+P    VVG      +G+ VL+   DED   Q  + + +      V
Sbjct: 135 ASLTASSVAVADAGVPMRDLVVGCTAGKADGKIVLDLSKDEDNFGQADIPMAILPRTGKV 194

Query: 186 LMVELEANQLSED 198
           ++++L+ +   E+
Sbjct: 195 VLLQLDGDVTEEE 207


>gi|158286052|ref|XP_308573.4| AGAP007212-PA [Anopheles gambiae str. PEST]
 gi|157020283|gb|EAA04624.5| AGAP007212-PA [Anopheles gambiae str. PEST]
          Length = 1288

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 52/79 (65%), Gaps = 5/79 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDF 677
           IY G+VV ++ FG FV   G R   +GLVHISQLSTE RV   +DVV  GD V VK++  
Sbjct: 330 IYDGRVVNIVAFGCFVQLNGFRRKKEGLVHISQLSTEGRVNLVTDVVNRGDEVKVKVMSL 389

Query: 678 DDRGKIKLSMKVVDQNTGK 696
               KI LSMK V+Q++G+
Sbjct: 390 AG-NKISLSMKEVEQSSGR 407


>gi|121551159|gb|ABM55769.1| RpsA [Pasteuria ramosa]
          Length = 392

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           ID D    I S      EAA+    +  +  E+  +  G V ++ DFGAFV   GA DGL
Sbjct: 154 IDQDSNKLILSCRAVHEEAAQHQREATFNNIEIGSVVDGIVRRLTDFGAFVD-VGAVDGL 212

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           VHISQ+S +RV   SDV+  GD V  K+L FD + G+I LS++
Sbjct: 213 VHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIR 255



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N I KG V +++ FGAFV      +GL+HIS++S   +   S+++KEG  + VK+L+ D 
Sbjct: 272 NDIVKGVVKRLVSFGAFVEILPGVEGLMHISEISHRHIVTPSEILKEGQEILVKILNVDS 331

Query: 680 RG-KIKLSMKVVDQNTGK 696
              ++ L+M  V+QNT +
Sbjct: 332 NARRVSLTMCDVEQNTSQ 349


>gi|67537102|ref|XP_662325.1| hypothetical protein AN4721.2 [Aspergillus nidulans FGSC A4]
 gi|40741573|gb|EAA60763.1| hypothetical protein AN4721.2 [Aspergillus nidulans FGSC A4]
 gi|259482440|tpe|CBF76926.1| TPA: hypothetical protein similar to ATP dependent helicase (Broad)
           [Aspergillus nidulans FGSC A4]
          Length = 1241

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  V DFGAFV+  G R   DGLVH+S +    RV   SD+V  G 
Sbjct: 267 LDDSPVLYKIYDGRVTGVKDFGAFVNLVGVRGKVDGLVHVSAMQEGTRVNHPSDLVSRGQ 326

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG+ +V
Sbjct: 327 PVKVKVISIQG-SRIGLSMKEVDQETGQDLV 356


>gi|110833125|ref|YP_691984.1| S1 RNA-binding domain-containing protein [Alcanivorax borkumensis
           SK2]
 gi|110646236|emb|CAL15712.1| S1 RNA binding domain protein [Alcanivorax borkumensis SK2]
          Length = 790

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 4/99 (4%)

Query: 602 EIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +AA  +E + ++ D+ + N I +G V  V +FGAFV     +DGLVH+S L+ + V  
Sbjct: 631 EFKAAVLKEGVETLKDLKQ-NMILEGTVTNVTNFGAFVDVGVHQDGLVHVSALADKFVED 689

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              VV  GD V VK+LD D DR +I L+M++ DQ T KP
Sbjct: 690 PHQVVAPGDIVKVKVLDVDLDRKRISLTMRMGDQPTEKP 728


>gi|237843989|ref|XP_002371292.1| S1 RNA-binding domain containing protein [Toxoplasma gondii ME49]
 gi|211968956|gb|EEB04152.1| S1 RNA-binding domain containing protein [Toxoplasma gondii ME49]
 gi|221483751|gb|EEE22063.1| 40S ribosomal protein S1, putative [Toxoplasma gondii GT1]
 gi|221504239|gb|EEE29914.1| 40S ribosomal protein S1, putative [Toxoplasma gondii VEG]
          Length = 378

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 11/123 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAA-REMIRSI---------TDVPEVNKIYKGQVVKVMDF 633
           KV   +DG +++   S+ + + + RE +R              PE++ I++G V ++ +F
Sbjct: 86  KVLSQEDGKLRLCMKSVNQHDGSERESLRQSFIHRGEGGGVKTPELDSIHQGTVRRIQEF 145

Query: 634 GAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           GAFV   G  RDGL+HIS +S++++ +  D +  GD VWVK+   ++ GK  L M+ + Q
Sbjct: 146 GAFVSIDGFDRDGLLHISCISSQKLDRVDDALAVGDKVWVKVTKVEEGGKYGLDMRGISQ 205

Query: 693 NTG 695
             G
Sbjct: 206 KDG 208



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           P+   I+KG V K+  +GAFV      ++GL+HIS++S +RV    DV+  G  VWVK+L
Sbjct: 29  PQSTDIHKGVVKKLQSYGAFVKVPDLDKEGLLHISRISDQRVENVEDVLAVGQEVWVKVL 88

Query: 676 DFDDRGKIKLSMKVVDQNTG 695
             +D GK++L MK V+Q+ G
Sbjct: 89  SQED-GKLRLCMKSVNQHDG 107


>gi|295398966|ref|ZP_06808948.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978432|gb|EFG54028.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 387

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V ++ DFG FV   G  DGLVHISQLS  RVA  SDVV+EG+TV VK+L  
Sbjct: 191 ETGQVLEGIVRRITDFGVFVD-VGGFDGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSV 249

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 250 DEENGRVSLSIK 261



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G+V +++ FGAFV      +GLVHISQ+ST+R+    +V+KEG+ V  K+LD  +  
Sbjct: 280 IVTGKVKRLVPFGAFVEIFPGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAE 339

Query: 681 GKIKLSMK 688
            +I LS++
Sbjct: 340 RRISLSIR 347



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +V +V  I +G+V K+ D    V   G++  G++ IS+LS+  + KTSD V  GD V  K
Sbjct: 10  NVYKVGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSVGDEVTAK 69

Query: 674 LL-----DFDDRGKIKLSMKVVD 691
           +      + ++ G + LS K VD
Sbjct: 70  VKKVEEGENEEDGLLILSKKAVD 92


>gi|291228613|ref|XP_002734274.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8-like
           [Saccoglossus kowalevskii]
          Length = 1199

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           PE+  +Y G++  +M FG FV   G R   DGLVHISQL  E RV+  ++VV +G  V V
Sbjct: 240 PEIGHVYDGKIASIMKFGCFVQLEGLRKRCDGLVHISQLRREGRVSDVNEVVHKGQKVKV 299

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+L      ++ LSMK VDQ+TG+
Sbjct: 300 KVLSIVG-ARVSLSMKDVDQDTGE 322


>gi|145510474|ref|XP_001441170.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408409|emb|CAK73773.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1115

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           E   IY+G V KV DFG FV    F G ++GLVHIS +  +RV    D++K    V+VK+
Sbjct: 172 EKGHIYEGVVTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKRNQKVFVKV 231

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698
           +   +  KI LSM+ VDQN+G+ I
Sbjct: 232 ISIVNE-KISLSMRDVDQNSGQEI 254


>gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
 gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
          Length = 241

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 18/240 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370
           +R+DGR    +R I  ++G + +  GS+ F  G+T+ I  V  G RE E     +S    
Sbjct: 9   LRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAV-YGPREVENRSQQISDQAL 67

Query: 371 -RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R ++ M  NF   +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 68  VRCEYTMA-NF---STGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G  
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTP----LLDLNYVEDSAGGP 179

Query: 490 DFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           D  V        +T +QMD K+   I EN+M +A++  K     I N + +VL E+  QL
Sbjct: 180 DVTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIEGCK----AIANYIREVLLENTKQL 235


>gi|312110427|ref|YP_003988743.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
 gi|311215528|gb|ADP74132.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 387

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V ++ DFG FV   G  DGLVHISQLS  RVA  SDVV+EG+TV VK+L  
Sbjct: 191 ETGQVLEGIVRRITDFGVFVD-VGGFDGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSV 249

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 250 DEENGRVSLSIK 261



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G+V +++ FGAFV      +GLVHISQ+ST+R+    +V+KEG+ V  K+LD  +  
Sbjct: 280 IVTGKVKRLVPFGAFVEIFPGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAE 339

Query: 681 GKIKLSMK 688
            +I LS++
Sbjct: 340 RRISLSIR 347



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +V +V  I +G+V K+ D    V   G++  G++ IS+LS+  + KTSD V  GD V  K
Sbjct: 10  NVYKVGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSVGDEVTAK 69

Query: 674 LL-----DFDDRGKIKLSMKVVD 691
           +      + ++ G + LS K VD
Sbjct: 70  VKKVEEGENEEDGLLILSKKAVD 92


>gi|309789714|ref|ZP_07684294.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
 gi|308228200|gb|EFO81848.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
          Length = 488

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  +  FGAFV     RDGLVHIS LS+ RV K  DVVK GD V VK+L+ 
Sbjct: 286 EPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVKVGDKVTVKVLEV 345

Query: 678 DDRGK-IKLSMKVVD 691
           D + K I L+M++ D
Sbjct: 346 DQQSKRISLTMRLDD 360



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G++     FGAF      +DGL+H+S+L+  RV K  D VK GD    K+L+ 
Sbjct: 203 KVGDVVEGKITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEI 262

Query: 678 DDRG-KIKLSMK 688
           D  G +I LS++
Sbjct: 263 DPDGTRISLSLR 274



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V  +  +G FV     RDGLVHIS++S  R+   SD+V+ GDTV V++   D D  +
Sbjct: 110 EGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVKSVDPDARR 169

Query: 683 IKLSMKVVDQNTG 695
           I L+M+  +++ G
Sbjct: 170 ISLTMRSQERSEG 182


>gi|289423347|ref|ZP_06425155.1| protein YhgF [Peptostreptococcus anaerobius 653-L]
 gi|289156278|gb|EFD04935.1| protein YhgF [Peptostreptococcus anaerobius 653-L]
          Length = 716

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ E  ++  G V  V+DFGAFV      DGLVHISQ+S +RV   SD++  
Sbjct: 631 RKDVMSLEDLEEDMEL-TGTVRNVVDFGAFVDIGIKNDGLVHISQISNKRVKNPSDLLTV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK++  D +RGK+ LSMK V Q
Sbjct: 690 GDIVKVKVIGIDKERGKVSLSMKNVKQ 716


>gi|198426278|ref|XP_002127628.1| PREDICTED: similar to ATP-dependent RNA helicase DHX8 (DEAH box
           protein 8) (RNA helicase HRH1) [Ciona intestinalis]
          Length = 1185

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R I + P    I++G+V  +M FG FV   G R   +GLVHIS+L  E RV++ SDVVK 
Sbjct: 224 RQIPEEPTPGDIFEGRVTSIMQFGCFVQLEGLRKRIEGLVHISELRAEGRVSQVSDVVKR 283

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G    VK++ F    K  L+MK VDQ TG+
Sbjct: 284 GQKCKVKVISFTG-TKTSLTMKDVDQITGE 312


>gi|94984781|ref|YP_604145.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
 gi|94555062|gb|ABF44976.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
          Length = 127

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 46/67 (68%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V +V DFGAFV F     GLVHISQ++   V    D V+EG+TV VK+L  D+RG
Sbjct: 9   VVEGRVTRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGETVEVKVLGRDERG 68

Query: 682 KIKLSMK 688
           ++ LS+K
Sbjct: 69  RLDLSIK 75


>gi|145549828|ref|XP_001460593.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428423|emb|CAK93196.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1111

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           E   IY+G V KV DFG FV    F G ++GLVHIS +  +RV    D++K    V+VK+
Sbjct: 176 EKGHIYEGVVTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKRNQKVFVKV 235

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698
           +   +  KI LSM+ VDQN+G+ I
Sbjct: 236 ISIVNE-KIALSMRDVDQNSGQEI 258


>gi|311030567|ref|ZP_07708657.1| 30S ribosomal protein S1 [Bacillus sp. m3-13]
          Length = 380

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D  E  ++ +G V ++ DFGAFV   G  DGLVHISQLS E V K SDVV EG  V V
Sbjct: 181 LLDTIETGQVLEGTVQRITDFGAFVDIGGV-DGLVHISQLSYEHVGKPSDVVTEGQKVNV 239

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D D  +I LS+K
Sbjct: 240 KVLSVDRDNERISLSIK 256



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V +++ FGAFV      +GLVHISQ+S + +    +V+ EGD V VK+LD ++  
Sbjct: 275 VTEGVVKRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLTEGDKVQVKVLDVNEAD 334

Query: 682 -KIKLSMK 688
            +I LS++
Sbjct: 335 QRISLSIR 342


>gi|242012890|ref|XP_002427158.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative
           [Pediculus humanus corporis]
 gi|212511441|gb|EEB14420.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative
           [Pediculus humanus corporis]
          Length = 1236

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           PEV KIY G++  ++ FG FV     R   +GLVHISQL  E R+   +DVV  G  V V
Sbjct: 278 PEVGKIYNGKIANIVPFGCFVQLENLRKRWEGLVHISQLRREGRITTVADVVSRGQKVKV 337

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+L    + K+ LS+K VDQ+TGK
Sbjct: 338 KVLSVTGQ-KVSLSIKDVDQDTGK 360


>gi|322795735|gb|EFZ18414.1| hypothetical protein SINV_08066 [Solenopsis invicta]
          Length = 258

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E+N+I+ G+V  V ++GAFV   G  + GL+H +Q+ST  V   ++V+++G+ VW K++ 
Sbjct: 5   ELNQIFLGEVASVQNYGAFVRIPGTPQQGLIHRTQVSTAHVDNVAEVLQKGERVWCKVIS 64

Query: 677 FDDRGKIKLSMKVVDQNTG 695
             + GK+ LSMK V+Q  G
Sbjct: 65  VGEDGKVGLSMKYVNQGNG 83


>gi|291545887|emb|CBL18995.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5]
          Length = 358

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG+V ++ DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+
Sbjct: 276 VGNVVKGKVARMTDFGAFVELAPGVDALLHVSQISREHVAKPSDVLSIGQEIEAKVVDFN 335

Query: 679 --DRGKIKLSMKVVDQNTGK 696
             DR KI LSMK ++ N+ +
Sbjct: 336 GEDR-KISLSMKALEDNSAE 354



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 600 LAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           LAE  E  +E++  I     V    +G V  V DFGAF+   GA DGL+HIS++S  RV 
Sbjct: 177 LAEKAEKQKELLAKIN----VGDKVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
               V   GD V V + D +   KI LS+K  ++N
Sbjct: 232 NPKKVFNVGDKVTVLIKDING-DKIALSLKFPEEN 265


>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
           1728]
 gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
 gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
          Length = 248

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 15/213 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I  Q G+L R  GS+ +I      I+V   G +E   Y         
Sbjct: 17  LRLDGRSFNELRPIKIQAGVLNRADGSA-YIEWGGNKIMVGVYGPKE--AYPKHSQDIDH 73

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN    +  E  R G P RR +   ++   A+   +    QFP   + +  E+ 
Sbjct: 74  AIVKARYNMAAFSVDERKRPG-PDRRTMEISKVISEALSSSI-MIEQFPRAEIDVYIEVL 131

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++D  + +A +  +++AL DAGVP+   V G   G V   D  ++L D+S +ED+ G  D
Sbjct: 132 QADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKV---DGHMVL-DLSKEEDNYGEAD 187

Query: 491 FKVA--GTDSGITAMQMDMKIGGISENIMVMAL 521
             +A       I  MQMD   G ++E+ +  A+
Sbjct: 188 IPIAIMPKTGDIVLMQMD---GDVTEDELYQAM 217



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 30/222 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K++ G + R +DG+    +G   ++  V      Y +  +D  D   +   Y    +
Sbjct: 28  RPIKIQAGVLNR-ADGSAYIEWGGNKIMVGVYGPKEAYPKHSQD-IDHAIVKARYNMAAF 85

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSP 126
           +V +      R+   P    + IS++I  ++    +  +  + E  V I V+Q D  +  
Sbjct: 86  SVDE------RKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD--AGT 137

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS---GTQ 182
            +  + AA+ AL  +G+P    VVG     ++G  VL+   +ED  G  D+ ++    T 
Sbjct: 138 RIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMPKTG 197

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           D VLM      Q+  DV  D +   +     + EA  +++++
Sbjct: 198 DIVLM------QMDGDVTEDEL---YQAMDMIFEATKRISQI 230


>gi|330935553|ref|XP_003305025.1| hypothetical protein PTT_17759 [Pyrenophora teres f. teres 0-1]
 gi|311318215|gb|EFQ86962.1| hypothetical protein PTT_17759 [Pyrenophora teres f. teres 0-1]
          Length = 1214

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKT 660
           E  R     + + P + KIY G+V  + DFG FV+  G +   DGLVH++Q+   RV   
Sbjct: 233 EFRRPPTPELDEEPVLYKIYNGKVTGIKDFGCFVNIQGVKGKVDGLVHVTQMMEGRVNHP 292

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           SD+V     V VK++  ++ G+I LSMK VDQ TG+
Sbjct: 293 SDLVSRWQEVKVKVIKTEN-GRISLSMKEVDQQTGR 327


>gi|241152816|ref|XP_002406956.1| RNA helicase, putative [Ixodes scapularis]
 gi|215493984|gb|EEC03625.1| RNA helicase, putative [Ixodes scapularis]
          Length = 1122

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           P V +IY G+V  +M FG FV   G     +GLVHISQL  E R+    DVV  G  V V
Sbjct: 167 PVVGQIYNGKVTNIMQFGCFVQLEGLPRRWEGLVHISQLRREGRITNVGDVVARGQRVKV 226

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+L F  + K  LSMK VDQ+TG+
Sbjct: 227 KVLSFTGQ-KTSLSMKDVDQDTGE 249


>gi|239827521|ref|YP_002950145.1| 30S ribosomal protein S1 [Geobacillus sp. WCH70]
 gi|239807814|gb|ACS24879.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 387

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V +V DFG FV   G  DGLVHISQLS  RVA  S+VVKEG+TV VK+L  
Sbjct: 191 EPGQVLEGTVRRVTDFGVFVD-VGGFDGLVHISQLSHTRVAHPSEVVKEGETVKVKVLAV 249

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 250 DEENGRVSLSIK 261



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G+V +++ FGAFV      +GLVHISQ+S +R+    +V+KEG+ V  K+LD ++  
Sbjct: 280 IVTGKVKRLVPFGAFVEIFPGVEGLVHISQISNKRIGTPHEVLKEGEEVKAKVLDVNEAE 339

Query: 681 GKIKLSMK 688
            +I LSM+
Sbjct: 340 RRISLSMR 347



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +V +V  I +G+VVK+ D    V   G++  G++ IS+LS+  + KTSD V  GD V  K
Sbjct: 10  NVYKVGDIVRGKVVKLEDKQVLVDIEGSKQSGIIPISELSSLHIEKTSDAVSVGDEVTAK 69

Query: 674 LL-----DFDDRGKIKLSMKVVDQN 693
           +      + ++ G + LS K VD +
Sbjct: 70  VKKVEEGENEEDGLLILSKKAVDAD 94


>gi|302835331|ref|XP_002949227.1| hypothetical protein VOLCADRAFT_104170 [Volvox carteri f.
           nagariensis]
 gi|300265529|gb|EFJ49720.1| hypothetical protein VOLCADRAFT_104170 [Volvox carteri f.
           nagariensis]
          Length = 1359

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 8/90 (8%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           D PE+  +Y+G+V   M  G FV   +F    +GLVHI+ +  + +   +DVVK G+ VW
Sbjct: 246 DAPELGGVYRGRVTGTMGTGCFVELINFAKKMEGLVHIANICKKPIQSPTDVVKRGEEVW 305

Query: 672 VKLLDFDDRG-----KIKLSMKVVDQNTGK 696
           VK++     G     ++ LSM+ VDQ TGK
Sbjct: 306 VKVIGMGSVGANGQQRLSLSMRDVDQATGK 335


>gi|86157945|ref|YP_464730.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197122752|ref|YP_002134703.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. K]
 gi|220917535|ref|YP_002492839.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85774456|gb|ABC81293.1| SSU ribosomal protein S1P [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196172601|gb|ACG73574.1| ribosomal protein S1 [Anaeromyxobacter sp. K]
 gi|219955389|gb|ACL65773.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 568

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 3/75 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           KG+V KV DFGAFV      +GLVH+S++  ERV    DVV+EG  V VK++D D  DR 
Sbjct: 467 KGRVTKVTDFGAFVEIEPGIEGLVHVSEMKDERVENPRDVVQEGQEVEVKVIDMDLQDR- 525

Query: 682 KIKLSMKVVDQNTGK 696
           K+ LSMK V+++ G+
Sbjct: 526 KVALSMKAVNRDGGE 540



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GLVH+S++S T+RV   S +V  GD V   +LD D + K
Sbjct: 293 KGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNVGDQVEAVVLDIDPKAK 352

Query: 683 -IKLSMKVVDQN 693
            I L MK ++ N
Sbjct: 353 RISLGMKQIEAN 364



 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D D   K  S  + +IEA    +  + D   +    +G+V  V DFG FV      D
Sbjct: 343 VVLDIDPKAKRISLGMKQIEANPWTL--LEDKYPIGTTIRGEVRNVTDFGIFVGVEEGID 400

Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           GLVH+S +S TER+    +  K+GD V   +L+ D
Sbjct: 401 GLVHVSDISWTERIKHPGEKFKKGDVVEAVVLNID 435



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  + D+GAF+   G  DGL+H++ +S  R+   S++ + G  V V +L FD   
Sbjct: 206 ILKGVVKNLTDYGAFIDLGGI-DGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPTS 264

Query: 682 -KIKLSMKVVDQN 693
            ++ L +K + ++
Sbjct: 265 ERVSLGLKQIQED 277


>gi|261368046|ref|ZP_05980929.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Subdoligranulum
           variabile DSM 15176]
 gi|282570035|gb|EFB75570.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Subdoligranulum
           variabile DSM 15176]
          Length = 639

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +VP V   +   VV +  FGAFV      DGLVHIS++S ERV K SDV+K GD V VK
Sbjct: 555 NEVP-VGTEFTAPVVSITKFGAFVRIMPGIDGLVHISEISNERVNKVSDVLKVGDEVRVK 613

Query: 674 LLDFD-DRGKIKLSMK 688
           L + D DR +I LSMK
Sbjct: 614 LTNVDFDRKRISLSMK 629



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K Y+G V  +  +GAFV   G  DGL HIS+LS   +   S+VV  GD + V +  +
Sbjct: 473 EVGKKYQGVVKSLTSYGAFVDI-GGVDGLCHISELSWSNIKHPSEVVNVGDEIEVYVKSY 531

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +  K+ L  K  + N
Sbjct: 532 DPENQKVSLGYKKEEDN 548


>gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 503

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G +  +  FGAFV     RDGLVHIS+LS  RVA+  D VK GD V V++LD 
Sbjct: 319 EKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARVEDAVKVGDKVQVRVLDV 378

Query: 678 DDRGK-IKLSMKVVD 691
           D + K I LS+++ D
Sbjct: 379 DPQSKRISLSLRLED 393



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           +G+V  +  +G FV     RDGLVHIS++S  R+   SD+VK GDTV V++   +  G +
Sbjct: 143 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 202

Query: 683 IKLSMKV 689
           I L+M++
Sbjct: 203 ISLTMRM 209



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           +G V  +  FG FV     +DGLVH+S+L+  RV K  DVV+ G T   K+L+ D  G +
Sbjct: 242 EGTVTGLAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGAR 301

Query: 683 IKLSMK 688
           I LS++
Sbjct: 302 ISLSLR 307


>gi|307243636|ref|ZP_07525779.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493005|gb|EFM65015.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 720

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 13/135 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           D++ + IG+G   ++ I+E+      +I + GT  I  + + ++E   E +         
Sbjct: 594 DKLSSDIGVGQATLKDIIEEIKKPGRDIRESGTKPILRTDVMQLEDLEEGM--------- 644

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             +  G V  V+DFGAFV      DGLVHIS++S + V   SD +  GD V VK++  D 
Sbjct: 645 --VLNGTVRNVVDFGAFVDIGIKNDGLVHISKISNKMVKNASDFLTVGDIVMVKVIGIDK 702

Query: 679 DRGKIKLSMKVVDQN 693
           D+G++ LSMK V Q+
Sbjct: 703 DKGRVSLSMKGVSQD 717


>gi|256003709|ref|ZP_05428697.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|255992270|gb|EEU02364.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
          Length = 419

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K+  S+   IE  +E + + T +  EV K++KG V  + DFGAFV   G  DGL+HIS+L
Sbjct: 182 KVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDIGGV-DGLIHISEL 240

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S  RV   S+V+K GD V V +L+FD ++ K+ L  + ++ N
Sbjct: 241 SWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDN 282



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 611 RSITDVP--EVNKIYK-GQVVKVM-----DFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           R + D P  ++ + YK G VVKV       FGAFV      DGLVHISQ+S++R+AK  D
Sbjct: 277 RKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSKRLAKVED 336

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            ++ G  V  K+++ D +  KI LS+K V
Sbjct: 337 ALEIGMKVDAKIIEVDGENKKISLSIKEV 365


>gi|295103120|emb|CBL00664.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [Faecalibacterium prausnitzii SL3/3]
          Length = 636

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +   +   VV +  FGAFV      DGLVHIS++S +RV K SD +K GD V VKLLD D
Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 617

Query: 679 -DRGKIKLSMKVVDQN 693
            D+ +I LSMK +  N
Sbjct: 618 FDKKRISLSMKALLNN 633



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV  GDT+ V + D 
Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +  K+ L  K  + N
Sbjct: 531 DTENHKVSLGYKKSEDN 547


>gi|145346016|ref|XP_001417493.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577720|gb|ABO95786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1135

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAF---VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P V  +Y+G+V  VMDFGAF   V F    +GLVH+S ++   +    D  + G++V+VK
Sbjct: 169 PSVGGVYRGRVTNVMDFGAFVELVEFKRKAEGLVHVSAITDRHLKSAKDGARRGESVFVK 228

Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696
           +L+ +   KI LSMK VDQ +GK
Sbjct: 229 VLNRNG-NKISLSMKDVDQISGK 250


>gi|255526510|ref|ZP_05393420.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296185879|ref|ZP_06854285.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7]
 gi|255509829|gb|EET86159.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296049547|gb|EFG88975.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7]
          Length = 388

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ +  ++  + +G+V+K+  FGAFV      +GLVHIS++S ER+AK SDV+  GD V
Sbjct: 278 ESVGNKFKIGDVVEGEVLKLASFGAFVEIQPGVEGLVHISEISEERIAKPSDVLNLGDKV 337

Query: 671 WVKLLDFDDR-GKIKLSMK 688
            VK+LD D++  +I LS+K
Sbjct: 338 RVKILDIDNKENRISLSIK 356



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V ++  FGAFV   G  DGL+H+S+LS +RV   +DVV  GD V V +L  D +  KI
Sbjct: 207 GVVSRLAKFGAFVDLGGV-DGLIHVSELSWKRVNNPADVVSVGDKVEVYILSVDKENNKI 265

Query: 684 KLSMKVVDQN 693
            L++K V++N
Sbjct: 266 ALALKDVNEN 275



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ KG+++ V +  A V+     DG++  S++        SD++KE + ++V +LD +D 
Sbjct: 29  EVVKGKIISVTENHAIVNIGYMSDGILSKSEVVENEEDNLSDILKENEEIYVYVLDMNDG 88

Query: 680 RGKIKLSMKVVDQ 692
            G + LS K  D+
Sbjct: 89  EGNVLLSKKAADK 101


>gi|109000931|ref|XP_001098288.1| PREDICTED: nucleolar protein of 40 kDa isoform 2 [Macaca mulatta]
          Length = 217

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGK 696
           SMKVV+Q TGK
Sbjct: 62  SMKVVNQGTGK 72


>gi|238544547|dbj|BAH60899.1| putative ribosomal protein S1 [Desulfotignum balticum]
          Length = 486

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           EI+AAR+      DV + + + +G+V+++M FGAF+      +G+ HIS+LS  RV K  
Sbjct: 189 EIKAARQAF--FADVSQGDTL-QGKVIRLMPFGAFIELAPGVEGMAHISELSWSRVEKPD 245

Query: 662 DVVKEGDTVWVKLL-----DFDDRGKIKLSMK 688
           +VVK GDTV VKLL     D  D  KI LS+K
Sbjct: 246 EVVKPGDTVLVKLLSITPQDGQDLPKISLSLK 277



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V+++ +FGAFV      DGLVHIS++S T RV +  +VV++G  V V +   D D  +
Sbjct: 299 GKVMRITNFGAFVEIAPGVDGLVHISEMSHTRRVTRPEEVVEKGQDVQVVIKSIDMDAKR 358

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 359 VSLSIK 364


>gi|297564549|ref|YP_003683521.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM
           9946]
 gi|296848998|gb|ADH62013.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946]
          Length = 129

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G+V ++MDFGAFV       GLVHISQ++ E V    D + EG+ + V +L  
Sbjct: 4   EAGAIVEGRVTRIMDFGAFVELPNGESGLVHISQIAHEFVKNVRDHLSEGEVIQVMVLGR 63

Query: 678 DDRGKIKLSMK 688
           DD+G++ LS+K
Sbjct: 64  DDKGRLDLSIK 74


>gi|332972994|gb|EGK10934.1| YhgF like protein [Kingella kingae ATCC 23330]
          Length = 755

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 10/106 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G  K+AS +        E +  I+D+ EV  I +G V  V +FGAFV     +DGLV
Sbjct: 617 DPRGEFKMASFT--------EGVNEISDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLV 667

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           HIS LS + VA   DVVK GD V VK+L+ D  R +I L+M++ D+
Sbjct: 668 HISMLSNKFVADPRDVVKAGDVVKVKVLEVDAARKRIALTMRLEDE 713


>gi|303241879|ref|ZP_07328373.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302590553|gb|EFL60307.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 685

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L E E A++  ++  D  EV KIY G V  + DFG FV   G  DGL+HIS+LS  R+  
Sbjct: 464 LLEEEKAKKS-KAFWDEVEVGKIYSGVVKSLTDFGVFVDIGGV-DGLIHISELSWSRIKH 521

Query: 660 TSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
            S+VVK GD V V +L+F  ++GKI L  +  + N
Sbjct: 522 PSEVVKVGDKVQVSILEFKKEKGKISLGYRKTEDN 556



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V++   FG FV      DGLVHISQ+S++R+AK  DV+  G  V  K+L+FD +  KI 
Sbjct: 574 KVLRFAPFGTFVELEEGIDGLVHISQISSKRLAKPEDVLTAGMKVDAKILEFDLENKKIS 633

Query: 685 LSMKVVDQNTGKPI 698
           LS+K V     KPI
Sbjct: 634 LSIKEV-----KPI 642


>gi|297282805|ref|XP_002802330.1| PREDICTED: nucleolar protein of 40 kDa [Macaca mulatta]
          Length = 243

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGK 696
           SMKVV+Q TGK
Sbjct: 62  SMKVVNQGTGK 72


>gi|114555245|ref|XP_001158613.1| PREDICTED: nucleolar protein of 40 kDa isoform 3 [Pan troglodytes]
 gi|30316450|gb|AAF72518.3| LDC4 [Homo sapiens]
 gi|119628030|gb|EAX07625.1| zinc finger, CCHC domain containing 17, isoform CRA_d [Homo
           sapiens]
          Length = 217

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGK 696
           SMKVV+Q TGK
Sbjct: 62  SMKVVNQGTGK 72


>gi|332254548|ref|XP_003276391.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 3 [Nomascus
           leucogenys]
          Length = 216

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGK 696
           SMKVV+Q TGK
Sbjct: 62  SMKVVNQGTGK 72


>gi|242777760|ref|XP_002479099.1| RNA helicase-like splicing factor (HRH1), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218722718|gb|EED22136.1| RNA helicase-like splicing factor (HRH1), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1222

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           I D P ++KIY G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD+V  G 
Sbjct: 255 IDDQPVLHKIYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG+ ++
Sbjct: 315 PVKVKVISIQG-TRIGLSMKEVDQVTGRDLI 344


>gi|291294665|ref|YP_003506063.1| RNA binding S1 domain-containing protein [Meiothermus ruber DSM
           1279]
 gi|290469624|gb|ADD27043.1| RNA binding S1 domain protein [Meiothermus ruber DSM 1279]
          Length = 125

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G+V ++M+FGAFV F     GLVHISQ++ E V    D + EGD V V +L  
Sbjct: 4   EAGAIVEGRVTRIMEFGAFVEFPNGESGLVHISQVAHEFVKNIRDHLNEGDVVSVLVLGR 63

Query: 678 DDRGKIKLSMK 688
           D++G++ LS+K
Sbjct: 64  DEKGRLDLSIK 74


>gi|125973232|ref|YP_001037142.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium thermocellum ATCC 27405]
 gi|281417431|ref|ZP_06248451.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum JW20]
 gi|125713457|gb|ABN51949.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|281408833|gb|EFB39091.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum JW20]
 gi|316940538|gb|ADU74572.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum DSM 1313]
          Length = 694

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K+  S+   IE  +E + + T +  EV K++KG V  + DFGAFV   G  DGL+HIS+L
Sbjct: 457 KVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDIGGV-DGLIHISEL 515

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S  RV   S+V+K GD V V +L+FD ++ K+ L  + ++ N
Sbjct: 516 SWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDN 557



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 611 RSITDVP--EVNKIYK-GQVVKVM-----DFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           R + D P  ++ + YK G VVKV       FGAFV      DGLVHISQ+S++R+AK  D
Sbjct: 552 RKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSKRLAKVED 611

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            ++ G  V  K+++ D +  KI LS+K V
Sbjct: 612 ALEIGMKVDAKIIEVDGENKKISLSIKEV 640


>gi|332808269|ref|XP_001158546.2| PREDICTED: nucleolar protein of 40 kDa isoform 2 [Pan troglodytes]
          Length = 243

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGK 696
           SMKVV+Q TGK
Sbjct: 62  SMKVVNQGTGK 72


>gi|226312030|ref|YP_002771924.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
 gi|226094978|dbj|BAH43420.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
          Length = 389

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +SI D  +V ++ +G V ++ DFG FV   G  DGLVH+S+L+  RV K SDVVKEGD V
Sbjct: 181 QSIMDKIQVGQVLEGTVQRMTDFGVFVDIGGV-DGLVHVSELAWNRVDKPSDVVKEGDKV 239

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            VK+L  D +  +I LS+K
Sbjct: 240 KVKVLKIDRENERIGLSIK 258



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           I  G V +++ FGAF+      +GLVHISQ++  RV   S+V+KEG  V VK+LD     
Sbjct: 277 ILNGTVKRLVSFGAFIELAPGIEGLVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVPQE 336

Query: 681 GKIKLSMKVVDQN 693
            +I LS++ V+++
Sbjct: 337 QRISLSIRAVEED 349



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 612 SITDVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           S+TD     V  + K  V KV D  A V      DGL+ IS+LS   V K SDVV  GDT
Sbjct: 7   SLTDATTISVGDVVKATVTKVEDKQALVDLGYKYDGLIPISELSPLHVEKVSDVVAVGDT 66

Query: 670 VWVKLLDFDD 679
             VK++  +D
Sbjct: 67  FEVKVIKLND 76


>gi|56420760|ref|YP_148078.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426]
 gi|56380602|dbj|BAD76510.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426]
          Length = 387

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 3/97 (3%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E E AR+    ++ + E  ++  G V ++ DFG FV   G  DGLVHISQL
Sbjct: 167 VILSHRAVVEEEQARQQKELLSRL-EPGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQL 224

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S  RVA  S+VVKEGD V VK+L  D ++G++ LS+K
Sbjct: 225 SHTRVAHPSEVVKEGDAVKVKVLAVDPEQGRLSLSIK 261



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD V  K+LD ++
Sbjct: 280 VVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGDVVKAKVLDVNE 337


>gi|313115242|ref|ZP_07800722.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622435|gb|EFQ05910.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 636

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +   +   VV +  FGAFV      DGLVHIS++S +RV K SDV+K GD V V+LLD D
Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDVLKVGDMVDVRLLDVD 617

Query: 679 -DRGKIKLSMKVV 690
            D+ +I LSMK +
Sbjct: 618 FDKKRISLSMKAL 630



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV  GDT+ V + D 
Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDI-GGVDGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +  K+ L  K  + N
Sbjct: 531 DTENHKVSLGYKKAEDN 547


>gi|302389719|ref|YP_003825540.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200347|gb|ADL07917.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
           oceani DSM 16646]
          Length = 672

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++ +G+VVK+ +FGAFV      +GLVH+SQ+S +RVA   DV+KEG+T+ VK+LD  
Sbjct: 556 IGQVVQGKVVKLTNFGAFVELEPGVEGLVHVSQISKKRVATPKDVLKEGETIKVKILDIK 615

Query: 679 -DRGKIKLSMK 688
            +  +I LS+K
Sbjct: 616 PEEKRISLSIK 626



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V K+ DFGAFV   G  DGL+HIS LS +RV   S+V+ E   V VK+L  D +
Sbjct: 473 QVIRGTVRKLTDFGAFVDI-GGYDGLIHISDLSWQRVNHPSEVLSENQEVDVKVLKVDKE 531

Query: 680 RGKIKLSMK 688
           RG+I L +K
Sbjct: 532 RGRISLGLK 540



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679
           KI +G VVKV D    V+     DG++ +++LS    +  S++VK GD + V++L   D+
Sbjct: 299 KIVEGTVVKVSDKEVLVNVGHKSDGIIPLNELSNLPFSSPSEIVKTGDRIKVQILKLEDN 358

Query: 680 RGKIKLSMKVVD 691
            G + LS K  D
Sbjct: 359 EGNLILSKKRAD 370


>gi|66803084|ref|XP_635385.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996562|sp|Q54F05|DHX8_DICDI RecName: Full=ATP-dependent RNA helicase dhx8; AltName: Full=DEAH
           box protein 8
 gi|60463693|gb|EAL61875.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 1160

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTER--VAKTSDVVK 665
           R I   P + KIY G+V  + D+G FV      G RDGLVHISQ+ + R  +   SDVVK
Sbjct: 193 REIDKEPILYKIYDGKVSSINDYGCFVTLEGIAGRRDGLVHISQILSGRTKLNHPSDVVK 252

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
               V VK+L      KI LSMK VDQ+TG+
Sbjct: 253 RNQQVKVKILSVAS-SKISLSMKDVDQSTGR 282


>gi|138895802|ref|YP_001126255.1| 30S ribosomal protein S1 [Geobacillus thermodenitrificans NG80-2]
 gi|196248690|ref|ZP_03147390.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|134267315|gb|ABO67510.1| 30S ribosomal protein S1 [Geobacillus thermodenitrificans NG80-2]
 gi|196211566|gb|EDY06325.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 387

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V ++ DFG FV   G  DGLVHISQLS  RVA  S+VVKEGD V VK+L  
Sbjct: 191 EAGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAV 249

Query: 678 D-DRGKIKLSMK 688
           D ++G++ LS+K
Sbjct: 250 DPEQGRLSLSIK 261



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD V  K+LD ++  
Sbjct: 280 VVTGTVKRLASFGAFVEIFPGVEGLVHVSQIANRRIGSPHEVLKEGDEVKAKVLDVNEAE 339

Query: 681 GKIKLSMK-VVDQNTGKP 697
            +I LS++ ++++ T  P
Sbjct: 340 HRISLSIRALLEEETAAP 357


>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 514

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G +  +  FGAFV     RDGLVHIS+LS   VA+  DVVK GD V V++LD 
Sbjct: 322 EKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNTHVARVEDVVKVGDRVQVRVLDV 381

Query: 678 DDRGK-IKLSMKVVD 691
           D + K I LS+++ D
Sbjct: 382 DPQSKRISLSLRLED 396



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           +G+V  +  +G FV     RDGLVHIS++S  R+   SD+VK GDTV V++   +  G +
Sbjct: 146 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 205

Query: 683 IKLSMKVVDQN 693
           I L+M+  +++
Sbjct: 206 ISLTMRTKERS 216



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           +G V  +  FG FV     +DGLVH+S+L+  RV K  DVV+ G T   K+L+ D  G +
Sbjct: 245 EGTVTGMAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGAR 304

Query: 683 IKLSMK 688
           I LS++
Sbjct: 305 ISLSLR 310


>gi|157129571|ref|XP_001661730.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872147|gb|EAT36372.1| ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1238

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 5/80 (6%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLD 676
           KIY G+VV ++ FG FV     R   +GLVHISQLS+E RV   +DVV   D V VK++ 
Sbjct: 284 KIYDGRVVNIVAFGCFVQLTSFRRKKEGLVHISQLSSEGRVNNVTDVVNRNDNVKVKVIS 343

Query: 677 FDDRGKIKLSMKVVDQNTGK 696
              + KI L MK VDQ TG+
Sbjct: 344 IAGQ-KISLCMKDVDQQTGQ 362


>gi|312213828|emb|CBX93830.1| similar to ATP-dependent RNA helicase DHX8 [Leptosphaeria maculans]
          Length = 1218

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQ-LSTERVAK 659
           E  R     + D P + K+Y G+V  + DFG FV+  G R   DGLVH++Q L   RV  
Sbjct: 236 EFRRPPTPELDDEPLLYKVYDGKVTGIKDFGVFVNLQGVRGKVDGLVHVTQMLEGARVNH 295

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            SD+V     V VK++  +  GKI LSMK VDQ TG
Sbjct: 296 PSDLVSRWQEVKVKVIKMEG-GKISLSMKEVDQRTG 330


>gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
 gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
          Length = 378

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V ++ DFGAFV   G  DGLVHISQLS  RV K SDVV EGD V VK+L  D  
Sbjct: 189 QVLEGTVQRLTDFGAFVDVGGV-DGLVHISQLSHTRVEKPSDVVAEGDAVKVKVLSVDKS 247

Query: 680 RGKIKLSMK 688
            G++ LS+K
Sbjct: 248 TGRVSLSIK 256



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V +++ FGAFV      +GLVHISQ+S + +    +V+ EG+ V VK+LD +++ 
Sbjct: 275 VVDGTVKRLVSFGAFVEVLPGVEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQE 334

Query: 682 -KIKLSMK 688
            ++ LS++
Sbjct: 335 RRVSLSIR 342


>gi|321311760|ref|YP_004204047.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
 gi|291484714|dbj|BAI85789.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
 gi|320018034|gb|ADV93020.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
          Length = 382

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 9/104 (8%)

Query: 589 DDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           D   V ++  ++ E E A   +E+++S+    EV  +  G+V ++ DFGAFV   G  DG
Sbjct: 158 DKNRVILSHRAVVESEQANKKQELLQSL----EVGSVLDGKVQRLTDFGAFVDIGGI-DG 212

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVHISQLS   V K SDVV+EG  V VK+L  D D  +I LS+K
Sbjct: 213 LVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD + + 
Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENE 334

Query: 681 GKIKLSMKVVDQN 693
            +I LSM+ +++ 
Sbjct: 335 ERISLSMRELEET 347



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  D + +K+   +D   I LS + VD +
Sbjct: 62  KVDDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|16079345|ref|NP_390169.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310206|ref|ZP_03592053.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221314529|ref|ZP_03596334.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319451|ref|ZP_03600745.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323727|ref|ZP_03605021.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|585942|sp|P38494|RS1H_BACSU RecName: Full=30S ribosomal protein S1 homolog
 gi|533106|gb|AAA85150.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|1146215|gb|AAC83962.1| similar to Escherichia coli S1 ribosomal protein; putative
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634706|emb|CAB14204.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 382

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 9/104 (8%)

Query: 589 DDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           D   V ++  ++ E E A   +E+++S+    EV  +  G+V ++ DFGAFV   G  DG
Sbjct: 158 DKNRVILSHRAVVESEQANKKQELLQSL----EVGSVLDGKVQRLTDFGAFVDIGGI-DG 212

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVHISQLS   V K SDVV+EG  V VK+L  D D  +I LS+K
Sbjct: 213 LVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD + + 
Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENE 334

Query: 681 GKIKLSMKVVDQ 692
            +I LSM+ +++
Sbjct: 335 ERISLSMRELEE 346



 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  D + +K+   +D   I LS + VD +
Sbjct: 62  KVDDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|296332972|ref|ZP_06875429.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674924|ref|YP_003866596.1| RNA degradation presenting factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149823|gb|EFG90715.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413168|gb|ADM38287.1| RNA degradation presenting factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 382

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 9/104 (8%)

Query: 589 DDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           D   V ++  ++ E E A   +E+++S+    EV  +  G+V ++ DFGAFV   G  DG
Sbjct: 158 DKNRVILSHRAVVESEQANKKQELLQSL----EVGSVLDGKVQRLTDFGAFVDIGGI-DG 212

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVHISQLS   V K SDVV+EG  V VK+L  D D  +I LS+K
Sbjct: 213 LVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD + + 
Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENE 334

Query: 681 GKIKLSMKVVDQ 692
            +I LSM+ +++
Sbjct: 335 ERISLSMRELEE 346



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  D + +K+   +D   I LS + VD +
Sbjct: 62  KVDDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|257437823|ref|ZP_05613578.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium
           prausnitzii A2-165]
 gi|257199746|gb|EEU98030.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium
           prausnitzii A2-165]
          Length = 636

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +   +   VV +  FGAFV      DGLVHIS++S +RV K SD +K GD V VKLLD D
Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 617

Query: 679 -DRGKIKLSMKVV 690
            D+ +I LSMK +
Sbjct: 618 FDKKRISLSMKAL 630



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV  GDT+ V + D 
Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +  K+ L  K  + N
Sbjct: 531 DTENHKVSLGYKKAEDN 547


>gi|218132315|ref|ZP_03461119.1| hypothetical protein BACPEC_00173 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992830|gb|EEC58831.1| hypothetical protein BACPEC_00173 [Bacteroides pectinophilus ATCC
           43243]
          Length = 808

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHISQ+S  R+    D V  GD V VK+LD D  +
Sbjct: 667 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQISNRRIEHPLDAVSVGDIVDVKVLDVDAAK 726

Query: 681 GKIKLSMKV---VDQNTGKP 697
            +I L+M++    D  TG+P
Sbjct: 727 ARISLTMRIDENTDAFTGRP 746


>gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
 gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
          Length = 240

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR+D R +  +R +      L+   GS L   G+T+ I  V++    +E+    L GT +
Sbjct: 2   VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSM----EEKVPPFLKGTNQ 57

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        GA + R     RL  R++  V+  +     T+ I +
Sbjct: 58  GWLTAEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDA 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA            +PI + VA +++G+V DG+   IL
Sbjct: 118 DVIQADGGTRTAAITGAFVALYDALEKLKREGIIKEIPIREFVAAVSVGIV-DGE---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+S +ED    +D  V  T+SG
Sbjct: 174 LDLSANEDMRAEVDMNVVMTESG 196


>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
 gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
          Length = 241

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 22/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLS 367
           +R+DGR    +R + AQ+G + +  GS++F  G+T+ I  V  G RE     +Q +D   
Sbjct: 9   LRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAV-YGPREVQNRSQQIID--Q 65

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
              R ++ M  NF   +TG+  R     RR      + R+ +   +         + I  
Sbjct: 66  ALVRCEYTMA-NF---STGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYV 121

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           ++ ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G
Sbjct: 122 QVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTP----LLDLNYVEDSAG 177

Query: 488 HMDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             D  V        +T +QMD K+     EN+M +A++  K     I N + ++L E+  
Sbjct: 178 GPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCK----AIANYIREILLENTK 233

Query: 545 QL 546
           QL
Sbjct: 234 QL 235


>gi|213410649|ref|XP_002176094.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Schizosaccharomyces japonicus yFS275]
 gi|212004141|gb|EEB09801.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Schizosaccharomyces japonicus yFS275]
          Length = 1082

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQL-STERVAKTSDVVKEGD 668
           + D P++N +Y G V  + DFG FV   G R    GLVHIS +    RV   SDVV  G+
Sbjct: 201 LEDKPKINGVYTGVVSGIKDFGVFVTLDGIRQRTSGLVHISNIQQNRRVEHPSDVVAYGE 260

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
            V+VK++  D+   K  LSMK VDQ TG+
Sbjct: 261 RVYVKVIKIDEAMKKYSLSMKDVDQETGE 289


>gi|261417937|ref|YP_003251619.1| 30S ribosomal protein S1 [Geobacillus sp. Y412MC61]
 gi|319767251|ref|YP_004132752.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
 gi|261374394|gb|ACX77137.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61]
 gi|317112117|gb|ADU94609.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
          Length = 387

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E E AR+    ++ + E  ++  G V ++ DFG FV   G  DGLVHISQL
Sbjct: 167 VILSHRAVVEEEQARQQKELLSRL-EPGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQL 224

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S  RVA  S+VVKEGD V VK+L  D + G++ LS+K
Sbjct: 225 SHTRVAHPSEVVKEGDAVKVKVLAVDPENGRLSLSIK 261



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD V  K+LD ++
Sbjct: 280 VVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGDVVKAKVLDVNE 337


>gi|160945617|ref|ZP_02092843.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443348|gb|EDP20353.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii
           M21/2]
          Length = 636

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +   +   VV +  FGAFV      DGLVHIS++S +RV K SD +K GD V VKLLD D
Sbjct: 558 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 617

Query: 679 -DRGKIKLSMKVV 690
            D+ +I LSMK +
Sbjct: 618 FDKKRISLSMKAL 630



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV  GDT+ V + D 
Sbjct: 472 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 530

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +  K+ L  K  + N
Sbjct: 531 DTENHKVSLGYKKSEDN 547


>gi|15806981|ref|NP_295706.1| 30S ribosomal protein S1 [Deinococcus radiodurans R1]
 gi|6459772|gb|AAF11535.1|AE002036_6 ribosomal protein S1, putative [Deinococcus radiodurans R1]
          Length = 629

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I+  ++ E E A+    ++  + E   +++G+VV++ DFG FV+  G  DGLVH S+L
Sbjct: 272 VIISHRAIMEAEKAKAREATVGQL-EPGAVFEGEVVEITDFGVFVNLGGI-DGLVHRSEL 329

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
           +  R     DVVK GD V V+++D D+ R +I LSMK + Q+
Sbjct: 330 TYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKALTQD 371



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           KG+V  + +FGAF+      +GLVH+S++S T+RV   ++V+KEGD V   +L  D R
Sbjct: 387 KGKVTNLTNFGAFIELEPGLEGLVHVSEMSWTKRVRHPNEVMKEGDEVEAVILRIDPR 444



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           KG++  + DFG F+      +GL+HIS+L T+RV   +D+ K+GD +   +L+ D
Sbjct: 474 KGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNID 528


>gi|227431694|ref|ZP_03913724.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352518|gb|EEJ42714.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 396

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G+V ++ DFGAFV   G  DGLVHIS++S +RV   +DV+ +G+TV VK+L  D
Sbjct: 196 VGEVVEGKVARLTDFGAFVDLGGV-DGLVHISEISHDRVKNPADVLTKGETVNVKILALD 254

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 255 AEKGRISLSIK 265



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V V++LD     
Sbjct: 284 VLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVLDVKPAE 343

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 344 ERISLSMKALEE 355


>gi|297529605|ref|YP_003670880.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
 gi|297252857|gb|ADI26303.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
          Length = 387

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E E AR+    ++ + E  ++  G V ++ DFG FV   G  DGLVHISQL
Sbjct: 167 VILSHRAVVEEEQARQQKELLSRL-EPGQVLDGVVRRIADFGVFVD-VGGFDGLVHISQL 224

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S  RVA  S+VVKEGD V VK+L  D + G++ LS+K
Sbjct: 225 SHTRVAHPSEVVKEGDVVKVKVLAVDPENGRLSLSIK 261



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD V  K+LD ++
Sbjct: 280 VVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGDVVKAKVLDVNE 337


>gi|295102762|emb|CBL00307.1| Ribosomal protein S1 [Faecalibacterium prausnitzii L2-6]
          Length = 360

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +   +   VV +  FGAFV      DGLVHIS++S +RV K SD +K GD V VKLLD D
Sbjct: 282 IGSTFHAPVVSLTKFGAFVRILPGVDGLVHISEISNDRVEKVSDALKVGDMVDVKLLDVD 341

Query: 679 -DRGKIKLSMKVV 690
            D+ +I LSMK +
Sbjct: 342 FDKKRISLSMKAL 354



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV  GDT+ V + D 
Sbjct: 196 EVGKTYTGVVKSLTSYGAFVDIGGV-DGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDI 254

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +  K+ L  K  + N
Sbjct: 255 DTENHKVSLGYKKAEDN 271


>gi|29124581|gb|AAH49016.1| Zcchc17 protein [Danio rerio]
          Length = 194

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD 662
           E  RE +  +  +P +  I KG+VV V  +GAFV   G R  GLVH S++S  RV   ++
Sbjct: 4   EHMREPV-GLDGLPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAE 62

Query: 663 VVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGK 696
           +V  G+ VW+K++     DD+ K+  SMK V+Q TG+
Sbjct: 63  IVDVGEQVWIKVIGKEMKDDKVKLSFSMKSVNQGTGR 99


>gi|224120548|ref|XP_002318357.1| predicted protein [Populus trichocarpa]
 gi|222859030|gb|EEE96577.1| predicted protein [Populus trichocarpa]
          Length = 1207

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           E+  +YKG+V +VMD G FV     R  +GLVH+SQ++T R+    D VK    V+VK++
Sbjct: 251 ELYGVYKGRVSRVMDTGCFVQLSDFRGKEGLVHVSQIATRRLGNAKDAVKRDQEVYVKVI 310

Query: 676 DFDDRGKIKLSMKVVDQNTGKPIV 699
                 K+ LSM+ VDQ++GK ++
Sbjct: 311 SILG-NKLSLSMRDVDQDSGKDLL 333


>gi|331701405|ref|YP_004398364.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128748|gb|AEB73301.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929]
          Length = 416

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ +FGAFV   G  DGLVH+SQ++ ERV K SDV+K G TV VK+L  D DR
Sbjct: 202 VVEGTVARLTNFGAFVDL-GGMDGLVHVSQIAYERVDKPSDVLKVGQTVKVKVLSVDFDR 260

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 261 NRISLSIK 268



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V +++DFGAFV      +GLVHISQ++ E +   +DV+K G+ + VK+LD D
Sbjct: 284 VGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIDTPADVLKVGEKIKVKVLDVD 343

Query: 679 -DRGKIKLSMKVV 690
            DR ++ LS+K +
Sbjct: 344 TDRKRLALSIKAL 356


>gi|46249693|gb|AAH68347.1| Zcchc17 protein [Danio rerio]
          Length = 235

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +P +  I KG+VV V  +GAFV   G R  GLVH S++S  RV   +++V  G+ VW+K+
Sbjct: 15  LPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKV 74

Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696
           +     DD+ K+  SMK V+Q TG+
Sbjct: 75  IGKEMKDDKVKLSFSMKSVNQGTGR 99


>gi|227510313|ref|ZP_03940362.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189965|gb|EEI70032.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 413

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V ++ +FGAFV   G  DGLVH+SQ++ ERV K SDV+K G  V VK+L  D DR
Sbjct: 202 IVEGKVARLTNFGAFVDL-GGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDR 260

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 261 NRISLSIK 268



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 4/77 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +++DFGAFV      +GLVHISQ++ E +A   DV+K G+ + VK+LD D DR
Sbjct: 287 VLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDR 346

Query: 681 GKIKLSMKVVDQNTGKP 697
            ++ LS+K +   T KP
Sbjct: 347 KRLALSIKAL---TDKP 360


>gi|227513320|ref|ZP_03943369.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
 gi|227524464|ref|ZP_03954513.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
 gi|227083193|gb|EEI18505.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
 gi|227088334|gb|EEI23646.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
          Length = 413

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V ++ +FGAFV   G  DGLVH+SQ++ ERV K SDV+K G  V VK+L  D DR
Sbjct: 202 IVEGKVARLTNFGAFVDL-GGMDGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDR 260

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 261 NRISLSIK 268



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 4/77 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +++DFGAFV      +GLVHISQ++ E +A   DV+K G+ + VK+LD D DR
Sbjct: 287 VLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVGEKIKVKVLDVDPDR 346

Query: 681 GKIKLSMKVVDQNTGKP 697
            ++ LS+K +   T KP
Sbjct: 347 KRLALSIKAL---TDKP 360


>gi|320334347|ref|YP_004171058.1| RNA-binding S1 domain-containing protein [Deinococcus maricopensis
           DSM 21211]
 gi|319755636|gb|ADV67393.1| RNA binding S1 domain protein [Deinococcus maricopensis DSM 21211]
          Length = 127

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 46/71 (64%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G+V +V DFGAF+ F     GLVHISQ++   V   S+ ++EG+ V VK+L  
Sbjct: 4   ESGAVATGRVTRVTDFGAFIQFENGETGLVHISQIAHSFVRSVSEHLQEGENVEVKVLGR 63

Query: 678 DDRGKIKLSMK 688
           D+RG++ LS+K
Sbjct: 64  DERGRLDLSIK 74


>gi|15806757|ref|NP_295477.1| hypothetical protein DR_1754 [Deinococcus radiodurans R1]
 gi|6459529|gb|AAF11311.1|AE002017_2 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 133

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G++ +V DFGAFV F     GLVHISQ++   V    D V+EG+ V VK+L  D+RG
Sbjct: 14  VAEGRITRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGENVEVKVLGRDERG 73

Query: 682 KIKLSMK 688
           ++ LS+K
Sbjct: 74  RLDLSIK 80


>gi|29568412|gb|AAO83393.1| Ldc4 [Danio rerio]
          Length = 230

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +P +  I KG+VV V  +GAFV   G R  GLVH S++S  RV   +++V  G+ VW+K+
Sbjct: 10  LPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKV 69

Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696
           +     DD+ K+  SMK V+Q TG+
Sbjct: 70  IGKEMKDDKVKLSFSMKSVNQGTGR 94


>gi|116618391|ref|YP_818762.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097238|gb|ABJ62389.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 396

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G+V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +G+TV VK+L  D
Sbjct: 196 VGEVVEGKVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGETVNVKILALD 254

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 255 AEKGRISLSIK 265



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V V++LD     
Sbjct: 284 VLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVLDVKPAE 343

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 344 ERISLSMKALEE 355


>gi|225174807|ref|ZP_03728804.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169447|gb|EEG78244.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 678

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V +++DFGAFV      +GLVHISQL+   V + S+VV++GD V VK+LD +  G
Sbjct: 568 VVEGKVTRIVDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVKVKILDINTDG 627

Query: 682 K-IKLSMK 688
           K + LSM+
Sbjct: 628 KRVSLSMR 635



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++   + E EAA +  + + ++ E  +I KG V ++ +FGAFV   G  DGLVHIS++S 
Sbjct: 457 LSRKQVLEEEAAVQKDKVLAEL-EPGQIIKGTVKRLTNFGAFVD-VGGIDGLVHISEISW 514

Query: 655 ERVAKTSDVVKEGDTVWVKLLD-FDDRGKIKLSMK 688
            R+    +V+  GD + VK+++   +R +I LS++
Sbjct: 515 HRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLR 549


>gi|187734759|ref|YP_001876871.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
 gi|187424811|gb|ACD04090.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
          Length = 562

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D  +V  +  GQV K+  FGAFV+  G  DGL+HISQLS + V +  DV+K GD + 
Sbjct: 437 SINDRFKVGDMVTGQVAKIASFGAFVNLDGDIDGLIHISQLSEDHVERVKDVIKVGDEIT 496

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNT 694
            +++  D    +I LS+K V+ +T
Sbjct: 497 ARVIKVDSIERRIGLSIKAVNYDT 520



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 11/146 (7%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  ++  IPP  +   +G        + E    KVN DD   + ++   + E E A +
Sbjct: 124 FLPGSQVDIIPPRDLNEYVGK-------VYEFKIVKVN-DDRKNIVLSRREVIEAERADQ 175

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             R +  V E +K+ +G V  + DFGAFV   G  DGL+HI+ +S  RV   S+++  G 
Sbjct: 176 RQRFLETVKEGDKV-EGIVKNITDFGAFVDLRGM-DGLLHITDMSWGRVNHPSEMLHIGQ 233

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ V +L+ D ++ ++ L +K +  N
Sbjct: 234 SLEVVILEVDREKERVSLGLKQMTDN 259



 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVK 665
           +N   KG+V K++ +GAFV      +GLVH+S+LS  +R+ + SDV+K
Sbjct: 270 INSHVKGRVTKLLPYGAFVELEKGVEGLVHVSELSWVKRITRPSDVLK 317



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +  + KGQV  +  +GAFV      DG++H+S +S T ++   S+V+K+GD V
Sbjct: 357 IGTVIKGQVRNLTPYGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKGDEV 409


>gi|328876888|gb|EGG25251.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 1152

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           E+NKIY G++  + D+G FV      G ++GLVH+SQ++  R+   S++VK    V VK+
Sbjct: 197 ELNKIYSGRITTINDYGCFVSLEGIVGKKEGLVHVSQITKARINNPSEIVKRNQNVKVKV 256

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
           L      ++ LS+K VDQ TG+
Sbjct: 257 LSVVG-SRVSLSIKDVDQETGR 277


>gi|325283233|ref|YP_004255774.1| RNA binding S1 domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324315042|gb|ADY26157.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
          Length = 125

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G++ +V DFGAFV F     GLVHISQ++   V    D V+EG+ V VK+L  D+RG
Sbjct: 8   VIEGRITRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGENVEVKVLGRDERG 67

Query: 682 KIKLSMK 688
           ++ LS+K
Sbjct: 68  RLDLSIK 74


>gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
 gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
          Length = 238

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 21/200 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++ +R I+      +   GS L   GDT+ +   T+    DE+    L G  + 
Sbjct: 3   RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATV----DEKVPPFLRGKGQG 58

Query: 373 DFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y+ LP AT    +     PS R +   RL  RA+  V+  +A    T+ +  ++ 
Sbjct: 59  WITAEYSMLPRATEVRNIRETLRPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL DA             PI   VA I+ G+V DG+  +   D+
Sbjct: 119 QADGGTRTASITGAFIALGDAIRTLKDNKEIETNPIKSYVAAISAGIV-DGEKML---DL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
             +ED    +D  +  TD G
Sbjct: 175 RFEEDSRAQVDMNLVMTDEG 194


>gi|89099121|ref|ZP_01172000.1| 30S ribosomal protein S1 [Bacillus sp. NRRL B-14911]
 gi|89086251|gb|EAR65373.1| 30S ribosomal protein S1 [Bacillus sp. NRRL B-14911]
          Length = 385

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + +++  G + ++ DFGAFV   G  DGLVHISQLS E V K SDVV+EG  V VK+L  
Sbjct: 192 QADQVLDGTIQRITDFGAFVDIGGI-DGLVHISQLSYEHVEKPSDVVEEGQKVQVKVLSV 250

Query: 678 D-DRGKIKLSMK 688
           D D  +I LS+K
Sbjct: 251 DRDNERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V +++ +GAFV      +GLVHISQ+S + +    +V++EG  V VK+LD ++  + +
Sbjct: 284 GVVRRLVSYGAFVEVFPGVEGLVHISQISHKHIGTPHEVLEEGQQVQVKVLDVNENDQ-R 342

Query: 685 LSMKVVD 691
           LS+ + D
Sbjct: 343 LSLSIKD 349


>gi|311068805|ref|YP_003973728.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
 gi|310869322|gb|ADP32797.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
          Length = 382

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDIGGI-DGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244

Query: 678 D-DRGKIKLSMK 688
           D D  +I LS+K
Sbjct: 245 DRDNERISLSIK 256



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG  V VK+LD ++  
Sbjct: 275 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEGE 334

Query: 681 GKIKLSMKVVDQ 692
            +I LSM+ +++
Sbjct: 335 ERISLSMRELEE 346



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  D + +K+   +D   I LS + VD +
Sbjct: 62  KADDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|319762303|ref|YP_004126240.1| tex-like protein [Alicycliphilus denitrificans BC]
 gi|317116864|gb|ADU99352.1| Tex-like protein [Alicycliphilus denitrificans BC]
          Length = 794

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ E   + +G V  V  FGAFV     +DGLVH+SQL+ + V+   +VVK G
Sbjct: 661 EGVEEITDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVSDAREVVKTG 719

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V VK+L+ D  RG+I LSMK+
Sbjct: 720 DIVKVKVLEVDVARGRISLSMKL 742


>gi|168185953|ref|ZP_02620588.1| protein YhgF [Clostridium botulinum C str. Eklund]
 gi|169295878|gb|EDS78011.1| protein YhgF [Clostridium botulinum C str. Eklund]
          Length = 718

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V VK+L+ D+ RG+I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVKVLEVDEKRGRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
 gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
          Length = 405

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +V+DFGAFV      +GLVH+SQ+S + +A  SDV+K GD V VK+LD + +R
Sbjct: 287 VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPER 346

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 347 QRLSLSIKALEE 358



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I D   V  + +G+V ++ +FGAF+   G  DGLVH+S++S ERV++ SDV+  G+ V V
Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDLGGV-DGLVHVSEISHERVSQPSDVLSVGEEVKV 251

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D +R +I LS+K
Sbjct: 252 KVLGLDPERERISLSIK 268


>gi|194379410|dbj|BAG63671.1| unnamed protein product [Homo sapiens]
          Length = 243

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G R  GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGK 696
            MKVV+Q TGK
Sbjct: 62  PMKVVNQGTGK 72


>gi|320103097|ref|YP_004178688.1| RNA-binding S1 domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319750379|gb|ADV62139.1| RNA binding S1 domain protein [Isosphaera pallida ATCC 43644]
          Length = 531

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I K +V K+MDFGAF     A +GL+HIS+L+  RV + SDV+KEGD + VK+L  D   
Sbjct: 407 IVKVKVTKIMDFGAFAEIEPAVEGLIHISELANRRVNRVSDVLKEGDELEVKILSIDPAE 466

Query: 681 GKIKLSMK 688
            KI LS++
Sbjct: 467 RKIALSLR 474



 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G+V  V DFGAFV   G  DGL+H+S +S  R      VV  G  + VK+L  D +
Sbjct: 321 QVRQGKVRTVRDFGAFVDLGGV-DGLLHVSDMSWVRNKDARAVVSVGQELTVKVLKIDRE 379

Query: 680 RGKIKLSMK 688
             K+ L +K
Sbjct: 380 NRKVSLGLK 388


>gi|108762762|ref|YP_631752.1| 30S ribosomal protein S1 family protein [Myxococcus xanthus DK
           1622]
 gi|108466642|gb|ABF91827.1| ribosomal protein S1 family protein [Myxococcus xanthus DK 1622]
          Length = 548

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++++++ E +++ +G+VV++  FGAFV      DGLVHIS LS  R+A   DVVKEG+T+
Sbjct: 331 KALSEIKEGDRL-QGKVVRLQQFGAFVELRPGVDGLVHISALSDRRIAHPRDVVKEGETI 389

Query: 671 WVKLLDFDDRGK 682
           WV +   D + K
Sbjct: 390 WVSVEKIDTQEK 401


>gi|326436604|gb|EGD82174.1| DEAH box polypeptide 8 [Salpingoeca sp. ATCC 50818]
          Length = 1288

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 6/88 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST--ERVAKTSDVVKEGDTVW 671
           P   K+Y+G+V  +M +G FV   G R   DG+VH+S +S     VA  +DVVK G TV+
Sbjct: 309 PVQGKVYEGKVTGIMQYGCFVSLLGVRGRPDGMVHVSNMSPTGAHVADPNDVVKRGQTVY 368

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VK+    +  KI L+MK +DQ+TG+ + 
Sbjct: 369 VKVQSRIN-NKISLTMKDIDQSTGEDVA 395


>gi|154286240|ref|XP_001543915.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1]
 gi|150407556|gb|EDN03097.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1]
          Length = 1226

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD+V +G 
Sbjct: 250 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQVGARVNHPSDLVSKGQ 309

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V VK++      +I LSMK VDQ+TG+
Sbjct: 310 PVKVKVITIQG-SRIGLSMKEVDQSTGR 336


>gi|295670043|ref|XP_002795569.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Paracoccidioides brasiliensis Pb01]
 gi|226284654|gb|EEH40220.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Paracoccidioides brasiliensis Pb01]
          Length = 1224

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY+G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD+V +G 
Sbjct: 248 LDDQPILFKIYEGRVTGLKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 307

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG+ +V
Sbjct: 308 PVKVKVVSIQG-SRIGLSMKEVDQVTGRDLV 337


>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
 gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
 gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
          Length = 248

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I  + G+L R  GS+ +I      I+V   G +E   Y         
Sbjct: 17  LRLDGRSFNELRPIKIEAGVLNRADGSA-YIEWGGNKIIVGVYGPKE--AYPKHSQDIDH 73

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 YN    +  E  R G P RR +   ++   A+   +    QFP   + +  E+ 
Sbjct: 74  AVVKARYNMAAFSVDERKRPG-PDRRTMEISKVISEALSSSI-MIEQFPRAEIDVYIEVL 131

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++D  + +A +  +++AL DAG+P+   V G   G V   D  I+L D+S +ED+ G  D
Sbjct: 132 QADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKV---DGHIVL-DLSKEEDNFGEAD 187

Query: 491 FKVA--GTDSGITAMQMD 506
             +A       I  +QMD
Sbjct: 188 IPMAIMPKTGEIVLLQMD 205



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 30/222 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           RP+K+E G + R +DG+    +G   ++  V      Y +  +D  D   +   Y    +
Sbjct: 28  RPIKIEAGVLNR-ADGSAYIEWGGNKIIVGVYGPKEAYPKHSQD-IDHAVVKARYNMAAF 85

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSP 126
           +V +      R+   P    + IS++I  ++    +  +  + E  V I V+Q D  +  
Sbjct: 86  SVDE------RKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD--AGT 137

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL---FVSGTQ 182
            +  + AA+ AL  +G+P    VVG     ++G  VL+   +ED  G  D+    +  T 
Sbjct: 138 RIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPKTG 197

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + VL+      Q+  DV  D     +     +IEA  K++++
Sbjct: 198 EIVLL------QMDGDVTEDEF---YEATSMIIEATKKISQI 230


>gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
 gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
          Length = 240

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R +  +R +      L+   GS L   G+T+ I  V++    +E+    L GT +
Sbjct: 2   IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSM----EEKVPPFLKGTNQ 57

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        G  + R     RL  R++  V+  +     T+ I +
Sbjct: 58  GWLTAEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDT 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA            +PI + VA +++G+V DG+   IL
Sbjct: 118 DVIQADGGTRTAAITGAFVALYDALEKLKRDGVIKEIPIKEFVAAVSVGIV-DGE---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+S +ED    +D  V  T+SG
Sbjct: 174 LDLSANEDMRAEVDMNVVMTESG 196


>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
 gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
          Length = 242

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 19/221 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369
           R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +   Q V+S    
Sbjct: 11  RVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSNEAL 69

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
            R ++ M   F   +TG+  R     RR      + R+ +   +  T   P++ + I  +
Sbjct: 70  VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASI-LTHLMPHSQIDIYVQ 124

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G 
Sbjct: 125 VLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCS----TPLLDLNYLEDSAGG 180

Query: 489 MDFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525
            D  V   A  D  +T +QMD K+     EN+M +A++  K
Sbjct: 181 SDVTVGILAKMDK-VTLLQMDAKLPMDTFENVMGLAIEGCK 220



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 23/220 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++ GQ      VN  E      Y
Sbjct: 21  RQLKGEVGIVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSNEALVRCEY 74

Query: 69  AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            + +   G  RR    + R TE  ++I + ++ SI  L      ++  + + V+Q D  +
Sbjct: 75  RMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPHSQIDIYVQVLQADGGT 132

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181
               ++  AA+ AL  +G+P    V      Y+    +L+    ED  G  D+ V     
Sbjct: 133 RSACIN--AATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAK 190

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            D V +++++A +L  D   + +      CK +   I ++
Sbjct: 191 MDKVTLLQMDA-KLPMDTFENVMGLAIEGCKAIASYIREV 229


>gi|225558449|gb|EEH06733.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus G186AR]
          Length = 1266

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD+V +G 
Sbjct: 290 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQAGARVNHPSDLVSKGQ 349

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V VK++      +I LSMK VDQ TG+
Sbjct: 350 PVKVKVITIQG-SRIGLSMKEVDQGTGR 376


>gi|224081357|ref|XP_002189446.1| PREDICTED: putative S1 RNA binding domain protein [Taeniopygia
           guttata]
          Length = 234

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 4/74 (5%)

Query: 627 VVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGK 682
           V  V DFGAF+   G R  GLVH SQLS+  V   ++++  GD VWVKL+     DD+ K
Sbjct: 13  VAAVTDFGAFIRIPGCRKQGLVHRSQLSSCPVDSPAEMLAVGDRVWVKLIGREMKDDKLK 72

Query: 683 IKLSMKVVDQNTGK 696
           + LSMKVV Q TGK
Sbjct: 73  LSLSMKVVHQGTGK 86


>gi|218294649|ref|ZP_03495503.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
 gi|218244557|gb|EED11081.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
          Length = 125

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G+VV+V DFGAFV   G   GLVHISQ++ E V    D + EGD V V +   
Sbjct: 4   EAGSIVEGRVVRVTDFGAFVELPGGEQGLVHISQIAHEFVRNVRDFLNEGDIVQVMVKGR 63

Query: 678 DDRGKIKLSMK 688
           D +G++ LS+K
Sbjct: 64  DPKGRLDLSIK 74


>gi|253681106|ref|ZP_04861909.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873]
 gi|253562955|gb|EES92401.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873]
          Length = 718

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V V++L+ D+ R
Sbjct: 650 ILTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEVDEKR 709

Query: 681 GKIKLSMK 688
           G+I LSMK
Sbjct: 710 GRISLSMK 717


>gi|226355945|ref|YP_002785685.1| ribosomal protein S1-like RNA-binding domain-containing protein
           [Deinococcus deserti VCD115]
 gi|226317935|gb|ACO45931.1| putative Ribosomal protein S1-like RNA-binding domain protein
           [Deinococcus deserti VCD115]
          Length = 126

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 44/65 (67%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G++ +V DFGAF+ F     GLVH+SQ++   V    D V+EGDTV VK+L  D+RG
Sbjct: 9   VAEGRITRVTDFGAFIQFENGETGLVHMSQIAHSFVRNIHDHVREGDTVEVKVLGRDERG 68

Query: 682 KIKLS 686
           ++ LS
Sbjct: 69  RLDLS 73


>gi|23099255|ref|NP_692721.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831]
 gi|22777484|dbj|BAC13756.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831]
          Length = 376

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V ++ +FGAFV   G  DGLVHISQL+ E V KTSDVV EGD + V++L  
Sbjct: 183 EPGQVIEGTVQRITNFGAFVDLGGV-DGLVHISQLAHEHVEKTSDVVSEGDKIKVEVLSV 241

Query: 678 D-DRGKIKLSMK 688
           D D  +I LS K
Sbjct: 242 DLDNERISLSHK 253



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V +++ FGAFV      +GLVHISQ++   +    +V++ G TV VK+LD 
Sbjct: 268 KVGSTIEGTVKRLVSFGAFVELLPGVEGLVHISQIANRHIGTPQEVLEIGQTVQVKVLDV 327

Query: 678 DDRG-KIKLSMK 688
            ++  +I LS+K
Sbjct: 328 SEQDQRISLSIK 339


>gi|300173425|ref|YP_003772591.1| ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
 gi|299887804|emb|CBL91772.1| Ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
          Length = 397

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +GD V VK+L  D
Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVNVKILALD 255

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 256 TEKGRISLSIK 266



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GDTV VK+LD     
Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDTVQVKVLDIKPAE 344

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 345 ERISLSMKALEE 356


>gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 259

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGRD +++R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ +P AT       S  G  S R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITSEYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL+DA       GV    PI   VA +++G+V D      L 
Sbjct: 119 VIQADGGTRTASITGSFVALVDAMNKLLQKGVISKMPIKSFVAAVSVGIVGDNK----LL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED   H+D  +  TD G    +Q   + G  S++     L  A+ G   I+    
Sbjct: 175 DLCYLEDCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQK 234

Query: 537 KVLSESRLQLG 547
           + L +  L++G
Sbjct: 235 EALGDISLKIG 245


>gi|226293915|gb|EEH49335.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Paracoccidioides brasiliensis Pb18]
          Length = 1224

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD+V +G 
Sbjct: 248 LDDQPILFKIYDGRVTGLKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 307

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG+ +V
Sbjct: 308 PVKVKVISIQG-SRIGLSMKEVDQVTGRDLV 337


>gi|169611168|ref|XP_001799002.1| hypothetical protein SNOG_08693 [Phaeosphaeria nodorum SN15]
 gi|111062741|gb|EAT83861.1| hypothetical protein SNOG_08693 [Phaeosphaeria nodorum SN15]
          Length = 1217

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAK 659
           E  R     + D P + K+Y G+V  V DFG FV+  G +   DGLVH++Q+    RV  
Sbjct: 231 EFRRPPTPELDDEPVLYKVYDGKVTGVKDFGCFVNLQGVKGKVDGLVHVTQMVEGARVNH 290

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            SD+V     V VK++  ++ G+I LSMK VDQ +G+
Sbjct: 291 PSDIVSRMQQVKVKVVKMEN-GRISLSMKEVDQQSGR 326


>gi|297588505|ref|ZP_06947148.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Finegoldia magna ATCC 53516]
 gi|297573878|gb|EFH92599.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Finegoldia magna ATCC 53516]
          Length = 675

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+VV ++DFGAFV      +GLVH+S++S E V K SD +  GDTV VK+L+ + ++
Sbjct: 554 VIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEK 613

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I LSMK +     KP
Sbjct: 614 KRIALSMKALLPKPEKP 630



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ DFGAF+   G  DGL+HIS +S  R+    DV+K GD +   +L  + ++ +I
Sbjct: 472 GKVQRLTDFGAFIDL-GGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRI 530

Query: 684 KLSMKVVDQ 692
            L +K + Q
Sbjct: 531 SLGLKQLQQ 539



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 619 VNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NKIY     KG+V+ V D    V+     DG++ + +LSTE      D+ K+GD + V 
Sbjct: 287 MNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQGDEIEVY 346

Query: 674 LLDFDD-RGKIKLSMKVVD 691
           ++  DD  G + LS K V+
Sbjct: 347 VIKLDDGEGNVVLSTKRVE 365


>gi|225684289|gb|EEH22573.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
           [Paracoccidioides brasiliensis Pb03]
          Length = 1224

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD+V +G 
Sbjct: 248 LDDQPILFKIYDGRVTGLKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 307

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG+ +V
Sbjct: 308 PVKVKVISIQG-SRIGLSMKEVDQVTGRDLV 337


>gi|304385043|ref|ZP_07367389.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
 gi|304329237|gb|EFL96457.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
          Length = 403

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E++ S+ +     ++  G+V ++ +FGAFV   G  DGLVHIS++S ERV K SDV
Sbjct: 191 EKRQEVLSSLQE----GEVVTGKVARLTNFGAFVDLGGI-DGLVHISEISYERVEKPSDV 245

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +K G+ V VK+L  D +R +I LS+K
Sbjct: 246 LKPGEEVQVKVLSVDPERERISLSIK 271



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I +   V  +  G+V ++ DFGAFV      +GLVHISQ+S + +A  +DV++EG  + 
Sbjct: 280 NIAEKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIK 339

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+L+   +  ++ LS+K +++
Sbjct: 340 VKVLEVHPEERRLALSIKALEE 361


>gi|323142053|ref|ZP_08076901.1| putative general stress protein 13 [Phascolarctobacterium sp. YIT
           12067]
 gi|322413440|gb|EFY04311.1| putative general stress protein 13 [Phascolarctobacterium sp. YIT
           12067]
          Length = 163

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  + +FGAFV     + GL+HIS++S   V    D +KE D V VK+L  
Sbjct: 4   EVGAIVEGEVTGITNFGAFVQLPEGKVGLIHISEVSNVYVKDVHDFLKEHDKVKVKVLSV 63

Query: 678 DDRGKIKLSMK 688
           DDRGKI LS+K
Sbjct: 64  DDRGKIGLSIK 74


>gi|303233770|ref|ZP_07320424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna BVS033A4]
 gi|302495204|gb|EFL54956.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna BVS033A4]
          Length = 675

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+VV ++DFGAFV      +GLVH+S++S E V K SD +  GDTV VK+L+ + ++
Sbjct: 554 VIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEK 613

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I LSMK +     KP
Sbjct: 614 KRIALSMKALLPKPEKP 630



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 6/111 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMI--RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +NID+    ++  S  A +EA R+ I  ++  ++    KI  G+V ++ DFGAF+   G 
Sbjct: 432 LNIDEKKR-RLVLSHRAVVEAERKEIEDKAWENITVGEKI-TGKVQRLTDFGAFIDL-GG 488

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            DGL+HIS +S  R+    DV+K GD +   +L  + ++ +I L +K + Q
Sbjct: 489 VDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQLQQ 539



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 619 VNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NKIY     KG+V+ V D    V+     DG++ + +LSTE      D+ K+GD + V 
Sbjct: 287 MNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQGDEIEVY 346

Query: 674 LLDFDD-RGKIKLSMKVVD 691
           ++  DD  G + LS K V+
Sbjct: 347 VIKLDDGEGNVVLSTKRVE 365


>gi|169824523|ref|YP_001692134.1| fused penicillin tolerance LytB domain-containing protein/30S
           ribosomal protein S1 [Finegoldia magna ATCC 29328]
 gi|302380664|ref|ZP_07269129.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna ACS-171-V-Col3]
 gi|167831328|dbj|BAG08244.1| fusion penicillin tolerance LytB domain and 30S ribosomal protein
           S1 [Finegoldia magna ATCC 29328]
 gi|302311607|gb|EFK93623.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 675

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+VV ++DFGAFV      +GLVH+S++S E V K SD +  GDTV VK+L+ + ++
Sbjct: 554 VIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEK 613

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I LSMK +     KP
Sbjct: 614 KRIALSMKALLPKPEKP 630



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ DFGAF+   G  DGL+HIS +S  R+    DV+K GD +   +L  + ++ +I
Sbjct: 472 GKVQRLTDFGAFIDL-GGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRI 530

Query: 684 KLSMKVVDQ 692
            L +K + Q
Sbjct: 531 SLGLKQLQQ 539



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 619 VNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NKIY     KG+V+ V D    V+     DG++ + +LSTE      D+ K+GD + V 
Sbjct: 287 MNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQGDEIEVY 346

Query: 674 LLDFDD-RGKIKLSMKVVD 691
           ++  DD  G + LS K V+
Sbjct: 347 VIKLDDGEGNVVLSTKRVE 365


>gi|330825776|ref|YP_004389079.1| Tex-like protein [Alicycliphilus denitrificans K601]
 gi|329311148|gb|AEB85563.1| Tex-like protein [Alicycliphilus denitrificans K601]
          Length = 794

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ E   + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G
Sbjct: 661 EGVEEITDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVQDAREVVKTG 719

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V VK+L+ D  RG+I LSMK+
Sbjct: 720 DIVKVKVLEVDVARGRISLSMKL 742


>gi|172057815|ref|YP_001814275.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990336|gb|ACB61258.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 377

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G V ++ DFGAFV   G  DGLVHIS+++  RV + SD+V EG  V VK+L  
Sbjct: 185 EVGQVLEGTVQRLTDFGAFVDIGGV-DGLVHISEMAHHRVERPSDIVTEGQKVEVKVLGV 243

Query: 678 D-DRGKIKLSMK 688
           D D  K+KLS+K
Sbjct: 244 DRDTEKVKLSIK 255



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I KG+V +++ FGAFV      +GL+HISQ++   +   S+V++EG  +  K+L+ 
Sbjct: 270 EAGDIVKGRVRRIVQFGAFVELAPQVEGLLHISQIANRHIGSPSEVLEEGQEIEAKVLEV 329

Query: 678 D-DRGKIKLSMKVVDQN 693
                KI LS +V++Q 
Sbjct: 330 HLAEHKISLSTRVLEQE 346


>gi|331270412|ref|YP_004396904.1| RNA binding S1 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329126962|gb|AEB76907.1| RNA binding S1 domain protein [Clostridium botulinum BKT015925]
          Length = 722

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V V++L+ D+ RG+I
Sbjct: 657 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDVVEVRVLEVDEKRGRI 716

Query: 684 KLSMK 688
            LSMK
Sbjct: 717 SLSMK 721


>gi|270291294|ref|ZP_06197516.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
 gi|270280140|gb|EFA25976.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
          Length = 403

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E++ S+ +     ++  G+V ++ +FGAFV   G  DGLVHIS++S ERV K SDV
Sbjct: 191 EKRQEVLSSLQE----GEVVTGKVARLTNFGAFVDLGGI-DGLVHISEISYERVEKPSDV 245

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +K G+ V VK+L  D +R +I LS+K
Sbjct: 246 LKPGEEVQVKVLSVDPERERISLSIK 271



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I +   V  +  G+V ++ DFGAFV      +GLVHISQ+S + +A  +DV++EG  + 
Sbjct: 280 NIAEKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIK 339

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+L+   +  ++ LS+K +++
Sbjct: 340 VKVLEVHPEERRLALSIKALEE 361


>gi|260439486|ref|ZP_05793302.1| hypothetical protein NgonDG_00065 [Neisseria gonorrhoeae DGI2]
 gi|291042720|ref|ZP_06568461.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291013154|gb|EFE05120.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 757

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    DVVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRDVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|291287721|ref|YP_003504537.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884881|gb|ADD68581.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 706

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  V+DFGAFV      DGLVHISQL+   V+  S+VVK G TV  K+L  D +R
Sbjct: 638 VLTGKVSNVVDFGAFVDVGLKNDGLVHISQLADRFVSDPSEVVKVGQTVKTKVLSVDRER 697

Query: 681 GKIKLSMKV 689
           G++ LSMKV
Sbjct: 698 GRLSLSMKV 706


>gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4]
          Length = 299

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           +++ +G V ++ DFGAFV   G  DGLVHISQLS E V K +DVV EG  V VK+L  D 
Sbjct: 109 DQVLEGTVQRITDFGAFVDIGGV-DGLVHISQLSHEHVEKPTDVVAEGQAVKVKVLSVDR 167

Query: 679 DRGKIKLSMK 688
           D  +I LS+K
Sbjct: 168 DNERISLSIK 177



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%), Gaps = 4/78 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           + +G+V +++ +GAF+      +GLVHISQLS + V    +V++EG +V VK+LD  +D 
Sbjct: 196 VLEGEVKRIVSYGAFIELFPGVEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDD 255

Query: 681 GKIKLSMKVVDQNTGKPI 698
            ++ LS+K +++   KP+
Sbjct: 256 QRLSLSIKELEE---KPV 270


>gi|194099852|ref|YP_002002989.1| hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945]
 gi|239997870|ref|ZP_04717794.1| hypothetical protein Ngon3_00055 [Neisseria gonorrhoeae 35/02]
 gi|240116753|ref|ZP_04730815.1| hypothetical protein NgonPID1_11046 [Neisseria gonorrhoeae PID18]
 gi|268593716|ref|ZP_06127883.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268602424|ref|ZP_06136591.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18]
 gi|193935142|gb|ACF30966.1| Hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945]
 gi|268547105|gb|EEZ42523.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268586555|gb|EEZ51231.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18]
 gi|317165320|gb|ADV08861.1| hypothetical protein NGTW08_1906 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 757

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    DVVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRDVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|322515333|ref|ZP_08068330.1| YhgF like protein [Actinobacillus ureae ATCC 25976]
 gi|322118709|gb|EFX90921.1| YhgF like protein [Actinobacillus ureae ATCC 25976]
          Length = 779

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V +   VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEEPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
 gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
          Length = 252

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 22/250 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R ++      +   GS L   GDT+ I   T+    DE+    L G  + 
Sbjct: 3   RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATV----DEKVPPFLRGKGQG 58

Query: 373 DFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y+ LP AT    +     PS R +   RL  RA+  V+   A    T+ +  ++ 
Sbjct: 59  WVTAEYSMLPRATEIRNIRESLKPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A + G+ +AL+DA            +P++  VA +++G+V DG+  +   D+
Sbjct: 119 QADGGTRTAAITGAFVALVDAFKYLKDNGIIEVIPVNSFVAAVSVGIV-DGEKLL---DL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + +ED    +D  V  TD G +  +Q   +    +   +   L  A++G   +++   +V
Sbjct: 175 NFEEDCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQV 234

Query: 539 LSESRLQLGE 548
           LS+   ++G+
Sbjct: 235 LSDVVDEVGK 244


>gi|296112015|ref|YP_003622397.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
 gi|295833547|gb|ADG41428.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
          Length = 395

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +GD V VK+L  D
Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVNVKILALD 255

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 256 TEKGRISLSIK 266



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V VK+LD     
Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 344

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 345 ERISLSMKALEE 356


>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
          Length = 410

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 2/80 (2%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++ PE   + +G V +V+DFGAFV      +GLVH+SQ+S + +A  SDV+K GD V VK
Sbjct: 280 SEAPE-GTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVK 338

Query: 674 LLDFD-DRGKIKLSMKVVDQ 692
           +L+ + D+ ++ LS+K +++
Sbjct: 339 VLEVNPDKQRLSLSIKALEE 358



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FGAF+   G  DGLVH+S++S ERV++ SDV+  G+ V VK+L  D
Sbjct: 199 VGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLD 257

Query: 679 -DRGKIKLSMK 688
            ++ +I LS+K
Sbjct: 258 PEKERISLSIK 268


>gi|225077089|ref|ZP_03720288.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
           NRL30031/H210]
 gi|224951646|gb|EEG32855.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
           NRL30031/H210]
          Length = 761

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E IR I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 633 EGIREISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDKFVQDPREVVKAG 691

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 692 DVVKVKVLEVDAARKRIALTMRLDDEPGG 720


>gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
 gi|169803898|gb|ACA82516.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
          Length = 396

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +GD V VK+L  D
Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVNVKILALD 255

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 256 TEKGRISLSIK 266



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V VK+LD     
Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 344

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 345 ERISLSMKALEE 356


>gi|326474036|gb|EGD98045.1| ATP-dependent RNA helicase DHX8 [Trichophyton tonsurans CBS 112818]
          Length = 1214

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 19/120 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD                R  +  + D P + KIY G+V  + DFG FV+ 
Sbjct: 219 RSGRNYNYDDD--------------FKRPPVSELDDRPILFKIYDGRVTGIKDFGVFVNL 264

Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G R   DGLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323


>gi|150388634|ref|YP_001318683.1| RNA-binding S1 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948496|gb|ABR47024.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 728

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVH+SQLS + V    DVV  GD V VK++  D +RGK+
Sbjct: 661 GTVRNVVDFGAFVDIGVKQDGLVHVSQLSNKFVKNPMDVVSVGDEVEVKIIGIDVERGKV 720

Query: 684 KLSMK 688
            LSMK
Sbjct: 721 SLSMK 725


>gi|108761556|ref|YP_629648.1| S1 RNA-binding domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108465436|gb|ABF90621.1| S1 RNA binding domain protein [Myxococcus xanthus DK 1622]
          Length = 783

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 7/99 (7%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +RS+ DV E   + +G V  V  FGAFV     +DGLVH+SQ+ST  V   S+VVK 
Sbjct: 631 REDLRSLEDVKE-GMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD-----QNTGKPIV 699
           GD + V++L  D  R ++ LS++ V      Q +G+P V
Sbjct: 690 GDRLTVRVLTVDLARKRLALSVRAVQEGGAPQPSGRPPV 728


>gi|52080799|ref|YP_079590.1| 30S ribosomal protein S1 [Bacillus licheniformis ATCC 14580]
 gi|52786169|ref|YP_091998.1| 30S ribosomal protein S1 [Bacillus licheniformis ATCC 14580]
 gi|319645244|ref|ZP_07999477.1| YpfD protein [Bacillus sp. BT1B_CT2]
 gi|52004010|gb|AAU23952.1| Nucleic acid-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348671|gb|AAU41305.1| YpfD [Bacillus licheniformis ATCC 14580]
 gi|317393053|gb|EFV73847.1| YpfD protein [Bacillus sp. BT1B_CT2]
          Length = 382

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E ++++    E  ++ +G+V ++ DFGAFV   G  DGLVHISQLS   V K SDV
Sbjct: 176 ERKQEFLQTL----EAGQVLEGKVQRLTDFGAFVDIGGI-DGLVHISQLSHSHVEKPSDV 230

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+EG  V VK+L  D D  +I LS+K
Sbjct: 231 VEEGQDVKVKVLSVDRDNERISLSIK 256



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           +  G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG  V VK+LD  ++ 
Sbjct: 275 VLDGKVQRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEEE 334

Query: 681 GKIKLSMKVVDQNTGK 696
            +I LSMK +++NT K
Sbjct: 335 ERISLSMKELEENTDK 350



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVDIPNCKQTGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              D + +K+   +D   I LS + VD +
Sbjct: 62  NVDDELELKVTKVEDDALI-LSKRAVDAD 89


>gi|115401346|ref|XP_001216261.1| ATP-dependent RNA helicase DHX8 [Aspergillus terreus NIH2624]
 gi|114190202|gb|EAU31902.1| ATP-dependent RNA helicase DHX8 [Aspergillus terreus NIH2624]
          Length = 1228

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668
           + D P + K+Y G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD+V  G 
Sbjct: 252 LDDQPILYKVYDGRVTGVKDFGAFVNLTGVKGKVDGLVHVSAMQEGVRVNHPSDLVSRGQ 311

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG+ ++
Sbjct: 312 PVKVKVVSIQG-SRIGLSMKEVDQATGRDLI 341


>gi|226355432|ref|YP_002785172.1| 30S ribosomal protein S1 [Deinococcus deserti VCD115]
 gi|226317422|gb|ACO45418.1| putative ribosomal protein S1 [Deinococcus deserti VCD115]
          Length = 576

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E    ++G+VV++ DFG FV+  G  DGLVH S+L+  R     DVVK G+ V V++LD 
Sbjct: 235 EAGAQFEGEVVEITDFGVFVNLGGI-DGLVHRSELTYGRFNHPRDVVKVGEKVQVQVLDV 293

Query: 678 DD-RGKIKLSMKVVDQN 693
           DD R +I LSMK + Q+
Sbjct: 294 DDGRERINLSMKALTQD 310



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           KG++  + DFG F+      +GL+HIS+L T+RV   +D+ K+GD +   +L+ D
Sbjct: 413 KGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNID 467



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 14/127 (11%)

Query: 578 VEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           V + G KV +     DDG  +I  S  A  +   E     T+   + +   G+V  + +F
Sbjct: 279 VVKVGEKVQVQVLDVDDGRERINLSMKALTQDPWE---GATERYSIGQKVNGKVTNLTNF 335

Query: 634 GAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DRGKIKLSMKVV 690
           GAFV      +GLVH+S++S T+RV   ++V+KEGD V   +L  D  DR +I L ++  
Sbjct: 336 GAFVELESGLEGLVHVSEMSWTKRVRHPNEVMKEGDEVEAVILRIDPKDR-RISLGIR-- 392

Query: 691 DQNTGKP 697
            Q T  P
Sbjct: 393 -QTTDDP 398


>gi|328949606|ref|YP_004366941.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328449930|gb|AEB10831.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 123

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G+V ++MDFGAFV       GLVHIS+++ E V    D + EG TV V +L  
Sbjct: 4   EAGSIVEGRVTRIMDFGAFVELPNGESGLVHISEIAHEFVKNVHDYLTEGQTVQVFVLGR 63

Query: 678 DDRGKIKLSMK 688
           D +G++ LS+K
Sbjct: 64  DHKGRLDLSIK 74


>gi|218885973|ref|YP_002435294.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756927|gb|ACL07826.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 756

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S  D+ E   +  G V  V  FGAFV     RDGLVH+SQLS   V   ++VV  G
Sbjct: 671 EGVHSPDDL-EPGMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPAEVVAPG 729

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
            TV V++L+ D  RG++ L+MK VDQ 
Sbjct: 730 RTVRVRVLEVDRARGRVSLTMKGVDQQ 756


>gi|118443081|ref|YP_878976.1| S1 RNA-binding domain-containing protein [Clostridium novyi NT]
 gi|118133537|gb|ABK60581.1| S1 RNA binding domain protein [Clostridium novyi NT]
          Length = 718

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V V++L+ D+ RG+I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEVDEKRGRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|269792637|ref|YP_003317541.1| RNA binding S1 domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100272|gb|ACZ19259.1| RNA binding S1 domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 504

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +VV++ DFGAFV      +GL+HISQLS +RV K SDV++EG  V  K+L+ +    +I+
Sbjct: 387 KVVRLADFGAFVEIEDGVEGLIHISQLSRQRVEKPSDVLREGQEVQAKILEVNPSEKRIR 446

Query: 685 LSMKVVDQNTG 695
           LS++ +++ TG
Sbjct: 447 LSLRALEEPTG 457



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           SL+  +A  +    +T    V +  KG V  + DFGAFV      +GL+HI  LS  RV 
Sbjct: 275 SLSLKQAQEDPWVGVTSRWTVGQRTKGVVTNLADFGAFVEIEPGVEGLIHIGDLSWSRVK 334

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              +V+K+G  V V +L+ D DR +I L +K
Sbjct: 335 HPKEVLKKGQEVEVVILEVDGDRRRIGLGLK 365


>gi|319651364|ref|ZP_08005493.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
 gi|317396895|gb|EFV77604.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
          Length = 379

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++  G V ++ DFGAFV   G  DGLVHISQLS E V K SDVV+EG  V VK+L  
Sbjct: 186 QAGQVLDGTVQRITDFGAFVDIGGI-DGLVHISQLSYEHVEKPSDVVEEGQKVKVKVLSV 244

Query: 678 D-DRGKIKLSMK 688
           D D  +I LS+K
Sbjct: 245 DRDNERISLSIK 256



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V +++ +GAFV      +GLVHISQ++ + +    +V+ EG  + VK+LD +++ + 
Sbjct: 277 EGTVKRLVSYGAFVEVFPGVEGLVHISQIAHKHIGTPHEVLSEGQEIKVKVLDVNEQDQ- 335

Query: 684 KLSMKVVD 691
           +LS+ + D
Sbjct: 336 RLSLSIKD 343


>gi|41054559|ref|NP_956838.1| nucleolar protein of 40 kDa [Danio rerio]
 gi|33604160|gb|AAH56336.1| Zinc finger, CCHC domain containing 17 [Danio rerio]
          Length = 235

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 4/85 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +P +  I KG+VV V  +GAFV   G R  GLVH S++S  RV   +++V  G+ VW+K+
Sbjct: 15  LPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKV 74

Query: 675 LD---FDDRGKIKLSMKVVDQNTGK 696
           +     DD+ K+  SM  V+Q TG+
Sbjct: 75  IGKEMKDDKVKLSFSMNSVNQGTGR 99


>gi|222152148|ref|YP_002561308.1| hypothetical protein MCCL_1905 [Macrococcus caseolyticus JCSC5402]
 gi|222121277|dbj|BAH18612.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 128

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  V +FGAFV     + GLVHIS+++   V   +D +K GD V VK+L  
Sbjct: 4   EVGSKLKGKVTGVKNFGAFVELPEGKSGLVHISEVADSYVENVADHLKVGDEVEVKVLTI 63

Query: 678 DDRGKIKLSMKVVDQNTGKPIV 699
            D GKI LS+K   +   KP+ 
Sbjct: 64  GDDGKISLSIKKAKERPKKPVA 85


>gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1]
 gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1]
          Length = 237

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 28/244 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   RD++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G QR
Sbjct: 1   MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQQR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  R  A   ++ G      RL  R++  V+   A   Y + +  
Sbjct: 57  GWVTAEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD------AGVPISKP-----VAGIAMGLVKDGD--DFI 474
           ++ ++DG +  A++ G+ +AL D      A   ++KP     VA I+ G+ K     D  
Sbjct: 117 DVIQADGGTRTASITGAWVALRDCIEWMRARDMVTKPVLKDHVAAISCGIYKGTPVLDLD 176

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR--GRLHIL 532
            + D + + D     +F + GT  GI  +Q   +    +E+     L  AK+  GRL  L
Sbjct: 177 YVEDSAAETD----ANFVLTGT-GGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDL 231

Query: 533 NEMS 536
            +MS
Sbjct: 232 QKMS 235


>gi|189241238|ref|XP_972602.2| PREDICTED: similar to CG8241 CG8241-PA [Tribolium castaneum]
          Length = 1247

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           P   KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   S+VV  G  V +
Sbjct: 291 PIPGKIYTGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRAEGRVTNVSEVVSRGMKVKI 350

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+L    + K+ LSMK VDQ TGK
Sbjct: 351 KVLSVTGQ-KVSLSMKDVDQITGK 373


>gi|157692789|ref|YP_001487251.1| 30S ribosomal protein S1 [Bacillus pumilus SAFR-032]
 gi|157681547|gb|ABV62691.1| ribosomal protein S1 [Bacillus pumilus SAFR-032]
          Length = 383

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVIDGKVQRLTDFGAFVDIGGI-DGLVHISQLSHAHVEKPSDVVEEGQEVQVKVLAV 244

Query: 678 D-DRGKIKLSMK 688
           D D  +I LS+K
Sbjct: 245 DRDNERISLSIK 256



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD  +D 
Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQTVKVKVLDVNEDE 334

Query: 681 GKIKLSMKVVDQNTGKPI 698
            +I LS++ +++N  K I
Sbjct: 335 ERISLSIRDLEENPEKQI 352



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K+GD + +K+   +D   I LS + VD
Sbjct: 62  KDGDELELKVTKVEDDALI-LSKRAVD 87


>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
 gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
          Length = 247

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R DGR    +R+++ ++G+  +  GS+   +G+T+ +  V  G  E +Q   
Sbjct: 2   NIISEHGYRQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAV-YGPYEPKQRSR 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
            L    R      Y+    +T E        RR +   RL  +A    +  T  +P + +
Sbjct: 61  LLE--DRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAV-LTENYPRSQI 117

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+ ++DGS   A V   +LAL DAGVP+   VA  +     +G   +   D++  E
Sbjct: 118 DVFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPNG---VACVDVNSRE 174

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           + +G +      T SG  A+ +      + +N +++ L+ A+R   H+
Sbjct: 175 E-MGIIPRLTVATISGQDAVVLAELQNRLHKNYLIVILEAARRATAHV 221


>gi|240274879|gb|EER38394.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H143]
          Length = 1210

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD+V +G 
Sbjct: 234 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQAGARVNHPSDLVSKGQ 293

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V VK++      ++ LSMK VDQ TG+
Sbjct: 294 PVKVKVITIQG-SRVGLSMKEVDQGTGR 320


>gi|270013243|gb|EFA09691.1| hypothetical protein TcasGA2_TC011820 [Tribolium castaneum]
          Length = 1181

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           P   KIY G+V  ++ FG FV   G R   +GLVHISQL  E RV   S+VV  G  V +
Sbjct: 225 PIPGKIYTGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRAEGRVTNVSEVVSRGMKVKI 284

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+L    + K+ LSMK VDQ TGK
Sbjct: 285 KVLSVTGQ-KVSLSMKDVDQITGK 307


>gi|326692495|ref|ZP_08229500.1| 40S ribosomal protein S1 [Leuconostoc argentinum KCTC 3773]
 gi|1085376|pir||JC4026 ribosomal protein S1-like DNA-binding protein - human
          Length = 396

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +GD V VK+L  D
Sbjct: 197 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 255

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 256 TEKGRISLSIK 266



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V VK+LD     
Sbjct: 285 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 344

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 345 ERISLSMKALEE 356


>gi|330877229|gb|EGH11378.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
          pv. morsprunorum str. M302280PT]
          Length = 71

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 8  EIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLTVNYQER 66
          + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+V+YQE+
Sbjct: 7  KFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEK 66

Query: 67 TYAVG 71
          TYA G
Sbjct: 67 TYAAG 71


>gi|77410282|ref|ZP_00786723.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
 gi|77171109|gb|EAO74537.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
          Length = 182

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 94/179 (52%), Gaps = 7/179 (3%)

Query: 156 YINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214
           Y++G +++NP   E + S L+L V+GT++A+ MVE  A +LSE+++L+A++ GH     +
Sbjct: 2   YVDGNFIINPTAQEQEASALELTVAGTKEAINMVESGAKELSEEIMLEALLKGHEAVCEL 61

Query: 215 IEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273
           I    ++     KE   ++      +L+ E+       L+ +  + EK  R    + +K+
Sbjct: 62  IAFQEEIVTAIGKEKAEVELLQVDPELQAEIIATHNIALQAAVQVEEKKAREAATEAVKE 121

Query: 274 KMVSYFS---SEHSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
            ++  +    +EH  ++    ++  + E ++   VR ++ + K R DGR  + +R + A
Sbjct: 122 VVIGEYEARYAEHEEYDRIMRDVAEILEQMEHAEVRRLITEDKGRPDGRRVDEIRPLDA 180


>gi|1004353|gb|AAA77669.1| ribosomal protein S1 homolog [Homo sapiens]
          Length = 406

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +GD V VK+L  D
Sbjct: 207 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 265

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 266 TEKGRISLSIK 276



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V VK+LD     
Sbjct: 295 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 354

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 355 ERISLSMKALEE 366


>gi|296085833|emb|CBI31157.3| unnamed protein product [Vitis vinifera]
          Length = 803

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +D PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+
Sbjct: 164 SDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVY 223

Query: 672 VKLLDFDDRGKIKLSMK 688
           VK++    + K+ LSM+
Sbjct: 224 VKVISVSGQ-KLSLSMR 239


>gi|194016705|ref|ZP_03055318.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
           7061]
 gi|194011311|gb|EDW20880.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
           7061]
          Length = 383

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVIDGKVQRLTDFGAFVDIGGI-DGLVHISQLSHAHVEKPSDVVEEGQEVQVKVLAV 244

Query: 678 D-DRGKIKLSMK 688
           D D  +I LS+K
Sbjct: 245 DRDNERISLSIK 256



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD  +D 
Sbjct: 275 VLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQTVKVKVLDVNEDE 334

Query: 681 GKIKLSMKVVDQNTGKPI 698
            +I LS++ +++N  K I
Sbjct: 335 ERISLSIRDLEENPEKQI 352



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K+GD + +K+   +D   I LS + VD
Sbjct: 62  KDGDELELKVTKVEDDALI-LSKRAVD 87


>gi|255954649|ref|XP_002568077.1| Pc21g10420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589788|emb|CAP95939.1| Pc21g10420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1231

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G V  V DFGAFV+  G R   DGLVH+S +    RV   SD+V  G 
Sbjct: 255 LDDHPVLFKIYDGTVTGVKDFGAFVNLKGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK+   D   +I LSMK VDQ TG  +V
Sbjct: 315 PVKVKVASIDG-TRIGLSMKEVDQVTGMDLV 344


>gi|310659084|ref|YP_003936805.1| polyribonucleotide nucleotidyltransferase [Clostridium sticklandii
           DSM 519]
 gi|308825862|emb|CBH21900.1| Polyribonucleotide nucleotidyltransferase (General stress protein
           13) [Clostridium sticklandii]
          Length = 144

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+VV++  FGAF+     + GLVHISQ+S + + + +D + EGDTV VK++  
Sbjct: 6   EVGMIVEGKVVQLKPFGAFISLADNKRGLVHISQISHDYIKEVNDALSEGDTVKVKIISI 65

Query: 678 D-DRGKIKLSMK 688
           + D GKI LS+K
Sbjct: 66  EPDSGKISLSIK 77


>gi|152975021|ref|YP_001374538.1| 30S ribosomal protein S1 [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023773|gb|ABS21543.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 382

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 6/83 (7%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I S+ +     +I +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + SDV+++
Sbjct: 180 KEAISSLKE----GEIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISHERVGQPSDVLEQ 234

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V VK+L  D D  +I LS+K
Sbjct: 235 GQKVKVKVLSVDADTQRISLSIK 257



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D  +V  + +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V V
Sbjct: 267 VADEIKVGDVREGTVNRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKV 326

Query: 673 KLLDFDDRGK-IKLSMK 688
           K+L+ +   K I LS+K
Sbjct: 327 KVLEVNAAEKRISLSIK 343


>gi|160946420|ref|ZP_02093629.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
 gi|158447536|gb|EDP24531.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
          Length = 697

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R  + SI D+ EV    KG V  V+DFGAFV      DGLVHISQ+S + +   S+V+K 
Sbjct: 616 RSDVLSIEDL-EVGMELKGTVRNVVDFGAFVDIGIKNDGLVHISQISNKYIKHPSEVLKV 674

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
            D V VK+L+ D ++ K+KL+MK
Sbjct: 675 SDVVKVKILEIDLEKQKVKLTMK 697


>gi|240146046|ref|ZP_04744647.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia
           intestinalis L1-82]
 gi|257201862|gb|EEV00147.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia
           intestinalis L1-82]
 gi|291539046|emb|CBL12157.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4]
          Length = 374

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG+V ++ DFGAFV      D L+H+SQ++ E + K SDV+K G  +  K++DF+
Sbjct: 276 VGNVVKGKVARMTDFGAFVELAPGVDALLHVSQIAKEHIEKPSDVLKVGQEIEAKIVDFN 335

Query: 679 -DRGKIKLSMKVV 690
            D  KI LS+K +
Sbjct: 336 EDEKKISLSIKAL 348



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++E  +E+   I    +V  + +G V  V DFGAF+   GA DGL+HIS++S  RV    
Sbjct: 180 KLEQQKELFAKI----KVGDVMEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPK 234

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            V   GD V V + D +D  KI LSMK   +N
Sbjct: 235 KVFNVGDHVRVFIKDINDT-KIALSMKFPAEN 265


>gi|327299420|ref|XP_003234403.1| ATP-dependent RNA helicase DHX8 [Trichophyton rubrum CBS 118892]
 gi|326463297|gb|EGD88750.1| ATP-dependent RNA helicase DHX8 [Trichophyton rubrum CBS 118892]
          Length = 1214

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD     AS               + D P + KIY G+V  + DFG FV+ 
Sbjct: 219 RSGRNYNYDDDLKRPPASE--------------LDDRPILFKIYDGRVTGIKDFGVFVNL 264

Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G R   DGLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKIVSIQD-SRIGLSMKEVDQVSG 323


>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
 gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
          Length = 242

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 17/220 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369
           R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +   Q V+S    
Sbjct: 11  RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSNEAL 69

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R ++ M   F   +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 70  VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G  
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCS----TPLLDLNYLEDSAGGS 181

Query: 490 DFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525
           D  V   A  D  +T +QMD K+     EN+M +A++  K
Sbjct: 182 DVTVGILAKMDK-VTLLQMDAKLPMDTFENVMGLAIEGCK 220



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 23/220 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++ GQ      VN  E      Y
Sbjct: 21  RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSNEALVRCEY 74

Query: 69  AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            + +   G  RR    + R TE  ++I + ++ SI  L     +++  + + V+Q D  +
Sbjct: 75  RMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPRSQIDIYVQVLQADGGT 132

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181
               ++  AA+ AL  +G+P    V      Y+    +L+    ED  G  D+ V     
Sbjct: 133 RSACIN--AATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAK 190

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            D V +++++A +L  D   + +      CK +   I ++
Sbjct: 191 MDKVTLLQMDA-KLPMDTFENVMGLAIEGCKAIATYIREV 229


>gi|254426874|ref|ZP_05040581.1| S1 RNA binding domain protein [Alcanivorax sp. DG881]
 gi|196193043|gb|EDX88002.1| S1 RNA binding domain protein [Alcanivorax sp. DG881]
          Length = 791

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 21/154 (13%)

Query: 563 IRNVIGMGGKVIRGIV------EQTGAKVNIDDDGTVKIASSSLAEIE------------ 604
           +  + G  G+ ++ +V      ++  A    DD+  +   +  L+E+E            
Sbjct: 575 VEKIAGKHGRPLKDLVGDVPFLKKVNAAEFTDDNFGLPTVTDILSELEKPGRDPRPEFKA 634

Query: 605 -AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            A +E + ++ D+ + + I +G V  V +FGAFV     +DGLVH+S L+ + V     V
Sbjct: 635 AALKEGVETLKDLKQ-SMILEGTVTNVTNFGAFVDIGVHQDGLVHVSALADKFVEDPHQV 693

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V  GD V VK+LD D DR +I L+M++ DQ T K
Sbjct: 694 VAPGDIVKVKVLDVDLDRKRISLTMRMDDQPTEK 727


>gi|1098565|gb|AAA97575.1| ribosomal S1 protein [Homo sapiens]
          Length = 352

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +GD V VK+L  D
Sbjct: 153 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 211

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 212 TEKGRISLSIK 222



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V VK+LD     
Sbjct: 241 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 300

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 301 ERISLSMKALEE 312


>gi|302655083|ref|XP_003019336.1| hypothetical protein TRV_06617 [Trichophyton verrucosum HKI 0517]
 gi|291183052|gb|EFE38691.1| hypothetical protein TRV_06617 [Trichophyton verrucosum HKI 0517]
          Length = 1210

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD     AS               + D P + KIY G+V  + DFG FV+ 
Sbjct: 219 RSGRNYNYDDDFKRPPASE--------------LDDRPILFKIYDGRVTGIKDFGVFVNL 264

Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G R   DGLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323


>gi|157676008|emb|CAP07845.1| putative transcriptional accessory protein [Neisseria sicca ATCC
           29256]
          Length = 757

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+ +G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPSG 716


>gi|302495909|ref|XP_003009968.1| hypothetical protein ARB_03894 [Arthroderma benhamiae CBS 112371]
 gi|291173490|gb|EFE29323.1| hypothetical protein ARB_03894 [Arthroderma benhamiae CBS 112371]
          Length = 1214

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD     AS               + D P + KIY G+V  + DFG FV+ 
Sbjct: 219 RSGRNYNYDDDFKKPPASE--------------LDDRPILFKIYDGRVTGIKDFGVFVNL 264

Query: 640 CGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G R   DGLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323


>gi|311693107|gb|ADP95980.1| transcriptional accessory protein [marine bacterium HP15]
          Length = 779

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD V VK++D D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISALSHTFVKDPREVVKAGDIVKVKVMDVDIPR 712

Query: 681 GKIKLSMKVVDQ----NTGKPIV 699
            +I L+M++ DQ    N GKP+ 
Sbjct: 713 KRIALTMRMDDQPGEKNEGKPMA 735


>gi|328948657|ref|YP_004365994.1| Cytidylate kinase [Treponema succinifaciens DSM 2489]
 gi|328448981|gb|AEB14697.1| Cytidylate kinase [Treponema succinifaciens DSM 2489]
          Length = 781

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN I KG+V KV DFGAF+      +GL HIS+ S T+++ K SD+VKEGD V   +L +
Sbjct: 499 VNDIVKGKVTKVPDFGAFIELEEGIEGLAHISEFSWTKKINKPSDMVKEGDEVECMILGY 558

Query: 678 DDR-GKIKLSMKVVDQN 693
           D + G++ L +K V +N
Sbjct: 559 DIQGGRVSLGLKQVTEN 575



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           KG V     FGAF+   G  DGL+HI+ +S   V +  D VK+G  + +K++  D  GK 
Sbjct: 419 KGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIELKVIRLDPEGKR 477

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 478 INLSLK 483


>gi|317131356|ref|YP_004090670.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469335|gb|ADU25939.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 143

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V  +  FGAFV   G + G+VHIS+++   V +  D V+E  TV VK+L  
Sbjct: 4   EVGAVLEGKVTGITKFGAFVELPGGKTGMVHISEVAPTFVKEIRDFVQENQTVKVKVLAI 63

Query: 678 DDRGKIKLSMKVVD 691
            D GK+ LSMK V+
Sbjct: 64  TDDGKVSLSMKRVE 77


>gi|212533317|ref|XP_002146815.1| RNA helicase-like splicing factor (HRH1), putative [Penicillium
           marneffei ATCC 18224]
 gi|210072179|gb|EEA26268.1| RNA helicase-like splicing factor (HRH1), putative [Penicillium
           marneffei ATCC 18224]
          Length = 1227

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           I D P + K Y G+V  V DFGAFV+  G R   DGLVH+S +    RV   SD+V  G 
Sbjct: 252 IDDQPVLYKTYDGRVTGVKDFGAFVNLQGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 311

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG+ ++
Sbjct: 312 LVKVKVVSIQG-TRIGLSMKEVDQVTGRDLI 341


>gi|253578799|ref|ZP_04856070.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849742|gb|EES77701.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 358

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG+V ++ DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+
Sbjct: 276 VGNVVKGKVARMTDFGAFVELAPGVDALLHVSQISREHVAKPSDVLSIGQEIEAKVVDFN 335

Query: 679 -DRGKIKLSMK 688
            +  KI LSMK
Sbjct: 336 GEDKKISLSMK 346



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 600 LAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           LAE  E  +E++  I     V    +G V  V DFGAF+   GA DGL+HIS++S  RV 
Sbjct: 177 LAEKAEKQKELMEKI----HVGDTVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
               V   GD V V + + +   KI LS+K  + N
Sbjct: 232 NPKKVFTVGDKVKVLIKEINGE-KIALSLKFPEAN 265


>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
 gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
          Length = 242

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 19/240 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369
           R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +   Q V+S    
Sbjct: 11  RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSKDAL 69

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R ++ M  +F   +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 70  VRCEYRMA-DF---STGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G  
Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCS----TPLLDLNYIEDSAGGP 181

Query: 490 DFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           D  V        +T +QMD K+     E +M +A++  K     I N + +VL E+  +L
Sbjct: 182 DVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCK----AIANYIREVLLENTRRL 237



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 29/223 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++ GQ      VN ++      Y
Sbjct: 21  RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSKDALVRCEY 74

Query: 69  AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            +     G  RR    + R TE  ++I + ++ SI  L     +++  + + V+Q D   
Sbjct: 75  RMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPRSQIDIFVQVLQAD--G 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181
                 + AA+ AL  +G+P    V      Y+    +L+    ED  G  D+ V     
Sbjct: 131 GTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGGPDVTVGFLTK 190

Query: 182 QDAVLMVELEANQLSED---VVLDAIIFGHNECKPVIEAISKL 221
            D V +++++A +L  D    V+D  I G   CK +   I ++
Sbjct: 191 MDKVTLLQMDA-KLPMDTFETVMDLAIEG---CKAIANYIREV 229


>gi|323489677|ref|ZP_08094904.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323396808|gb|EGA89627.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 381

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  DGLVHISQLS E V K SDVV EG  V VK+L  D D  +
Sbjct: 192 KGKVQRIASFGAFVDIGGV-DGLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSER 250

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 251 ISLSIK 256



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ G V +++ +GAFV      +GLVHISQ++ + +A  S+V+ EG+ V VK+L+ +   
Sbjct: 275 VHTGTVKRLVSYGAFVEVLPGVEGLVHISQIAHKHIATPSEVLTEGEKVEVKILEVNKAD 334

Query: 682 K-IKLSMKVVDQNTGK 696
           K + LS+K + +  G+
Sbjct: 335 KRLSLSIKELQEKQGE 350


>gi|307250521|ref|ZP_07532466.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857463|gb|EFM89574.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|307257325|ref|ZP_07539095.1| hypothetical protein appser10_13230 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864175|gb|EFM96088.1| hypothetical protein appser10_13230 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|291522293|emb|CBK80586.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [Coprococcus catus GD/7]
          Length = 637

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ DFGAFV      D L+H+SQ+S + V K SDV+  G T+  K++DF+
Sbjct: 557 VGNVVEGKVARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSYGQTITAKVVDFN 616

Query: 679 DRG-KIKLSMKVVD 691
           +   KI LSMK +D
Sbjct: 617 EESQKISLSMKALD 630



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G+V  V DFGAF+   GA DGL+HIS++S  RV     V+K GDT+ V + D     KI
Sbjct: 479 EGRVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVLKVGDTLKVLIKDIQGE-KI 536

Query: 684 KLSMKVVDQN 693
            LS+K  + N
Sbjct: 537 ALSLKFPETN 546


>gi|60729648|pir||JC7997 nucleolar protein, pNO40, short form - human
          Length = 217

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 630 VMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G R  GLV  + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVRRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGK 696
           SMKVV+Q TGK
Sbjct: 62  SMKVVNQGTGK 72


>gi|307246188|ref|ZP_07528270.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255169|ref|ZP_07536987.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259606|ref|ZP_07541331.1| hypothetical protein appser11_14050 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853123|gb|EFM85346.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862042|gb|EFM94018.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866542|gb|EFM98405.1| hypothetical protein appser11_14050 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|251779026|ref|ZP_04821946.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083341|gb|EES49231.1| putative 30S ribosomal protein S1 [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 378

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I+ G+VVK   FGAFV      +GLVHIS+++ E +AK SDV++    V VK+LDF+  G
Sbjct: 280 IFDGKVVKFASFGAFVEIFDGVEGLVHISEITDENIAKPSDVLELNQKVKVKVLDFNKEG 339

Query: 682 KIKLSMKVVD 691
           K +LS+ + D
Sbjct: 340 K-RLSLSIKD 348



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +AS    E E   +  + I D  +  +   G V K++ +GAFV   G  +GL+HIS LS 
Sbjct: 168 VASRKAIENEEYEKNRKVIWDSLKEGEKRTGIVKKLVKYGAFVDIGGV-EGLIHISDLSW 226

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            RV +  ++VKE D V V +    DR   KLS+ + D N
Sbjct: 227 NRVNRPEEIVKENDKVEVYIGSV-DRENQKLSLVLKDIN 264


>gi|320449448|ref|YP_004201544.1| S1 domain-containing protein [Thermus scotoductus SA-01]
 gi|320149617|gb|ADW20995.1| S1 domain protein [Thermus scotoductus SA-01]
          Length = 125

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G+VV+V DFGAFV   G   GLVHISQ++ E V    D + EGD V V +   
Sbjct: 4   EAGSVVEGRVVRVTDFGAFVELPGGEQGLVHISQIAHEFVRNVRDFLNEGDIVQVMVKGR 63

Query: 678 DDRGKIKLSMK 688
           D +G++ LS+K
Sbjct: 64  DAKGRLDLSIK 74


>gi|313212412|emb|CBY36394.1| unnamed protein product [Oikopleura dioica]
          Length = 1041

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P+V KIY G+V  +  FG F+   G     +GL HIS+L +ERV + SDVV     V VK
Sbjct: 228 PQVGKIYNGKVTSLKHFGCFITVEGLLKPIEGLCHISELRSERVNEVSDVVARFQQVKVK 287

Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696
           +L F    +  LSMK VDQ TG+
Sbjct: 288 VLSFSG-TRTSLSMKDVDQATGE 309


>gi|153810812|ref|ZP_01963480.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174]
 gi|149833208|gb|EDM88290.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174]
          Length = 359

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+
Sbjct: 276 VGNVVTGKVARMTDFGAFVELAPGIDALLHVSQISKEHVAKPSDVLSIGQEIQAKVVDFN 335

Query: 679 -DRGKIKLSMK 688
            D  KI LSMK
Sbjct: 336 GDDKKISLSMK 346



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 600 LAE-IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           LAE  E  +E++  I     V     G V  V DFGAF+   GA DGL+HIS++S  RV 
Sbjct: 177 LAEKAEKQKELMEKI----HVGDTVTGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
               V   GD V V + + +   KI LSMK  ++N
Sbjct: 232 NPKKVFNVGDEVRVLIKEING-DKIALSMKFPEEN 265


>gi|165976690|ref|YP_001652283.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876791|gb|ABY69839.1| predicted transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|188589736|ref|YP_001919939.1| 30S ribosomal protein S1 [Clostridium botulinum E3 str. Alaska E43]
 gi|188500017|gb|ACD53153.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E3
           str. Alaska E43]
          Length = 378

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I+ G+VVK   FGAFV      +GLVHIS+++ E +AK SDV++    V VK+LDF+  G
Sbjct: 280 IFDGKVVKFASFGAFVEIFDGVEGLVHISEITDENIAKPSDVLELNQKVKVKVLDFNKEG 339

Query: 682 KIKLSMKVVD 691
           K +LS+ + D
Sbjct: 340 K-RLSLSIKD 348



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +AS    E E   +  + I D  +  +   G V K++ +GAFV   G  +GL+HIS LS 
Sbjct: 168 VASRKAIENEEYEKNRKVIWDSLKEGEKRTGVVKKLVKYGAFVDIGGV-EGLIHISDLSW 226

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            RV +  ++VKE D V V +    DR   KLS+ + D N
Sbjct: 227 NRVNRPEEIVKENDKVEVYIGSV-DRENQKLSLVLKDIN 264


>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
 gi|194692034|gb|ACF80101.1| unknown [Zea mays]
          Length = 242

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 19/221 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369
           R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +   Q V+S    
Sbjct: 11  RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSKEAL 69

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
            R ++ M   F   +TG+  R     RR      + R+ +   +  T   P++ + I  +
Sbjct: 70  VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASI-LTHLMPHSQIDIYVQ 124

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED  G 
Sbjct: 125 VLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCS----TPLLDLNYLEDSAGG 180

Query: 489 MDFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525
            D  V   A  D  +T +QMD K+     EN+M +A++  K
Sbjct: 181 SDVTVGILAKMDK-VTLLQMDAKLPIDTFENVMGLAIEGCK 220



 Score = 37.4 bits (85), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 23/220 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQER----TY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++ GQ      VN +E      Y
Sbjct: 21  RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQ-----VNSKEALVRCEY 74

Query: 69  AVGKIPGGYLRR----ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            + +   G  RR    + R TE  ++I + ++ SI  L      ++  + + V+Q D  +
Sbjct: 75  RMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASI--LTHLMPHSQIDIYVQVLQADGGT 132

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GT 181
               ++  AA+ AL  +G+P           Y+    +L+    ED  G  D+ V     
Sbjct: 133 RSACIN--AATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAK 190

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            D V +++++A +L  D   + +      CK +   I ++
Sbjct: 191 MDKVTLLQMDA-KLPIDTFENVMGLAIEGCKAIATYIREV 229


>gi|307261748|ref|ZP_07543414.1| hypothetical protein appser12_13070 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868566|gb|EFN00377.1| hypothetical protein appser12_13070 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|190150591|ref|YP_001969116.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263935|ref|ZP_07545539.1| hypothetical protein appser13_13440 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915722|gb|ACE61974.1| predicted transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870800|gb|EFN02540.1| hypothetical protein appser13_13440 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|126208738|ref|YP_001053963.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           L20]
 gi|126097530|gb|ABN74358.1| predicted transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|238506893|ref|XP_002384648.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           flavus NRRL3357]
 gi|220689361|gb|EED45712.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           flavus NRRL3357]
          Length = 1229

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + K+Y G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD+V  G 
Sbjct: 253 LDDAPILYKVYDGRVTGVKDFGAFVNLSGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 312

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            V VK++      +I LSMK VDQ TG
Sbjct: 313 PVKVKVISIQG-SRIGLSMKEVDQVTG 338


>gi|160934311|ref|ZP_02081698.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753]
 gi|156866984|gb|EDO60356.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753]
          Length = 686

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +++     +  E+ K+Y G V  +  +GAFV   G  DG+VHIS+LS  R+   S++V  
Sbjct: 474 KKLAEKFWETAEIGKVYTGTVKSLTSYGAFVDL-GGIDGMVHISELSWSRIKHPSEIVNV 532

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GDTV V + D D ++GKI L  K  + N
Sbjct: 533 GDTVEVYIKDLDPEKGKISLGYKKTEDN 560



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 45/200 (22%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +  RGR   +  +  VL + R +L E F    EI  +    ++++   G  V  G +   
Sbjct: 453 EVNRGRRRAVGSIRSVLKDERKKLAEKFWETAEIGKVYTGTVKSLTSYGAFVDLGGI--- 509

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR-------SITDV-PEVNKIYKG-------- 625
                   DG V I+  S + I+   E++         I D+ PE  KI  G        
Sbjct: 510 --------DGMVHISELSWSRIKHPSEIVNVGDTVEVYIKDLDPEKGKISLGYKKTEDNP 561

Query: 626 -QVVK---------------VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            +++K               +  FGAF       DGL+HISQ++  R+ K  DV+  GD 
Sbjct: 562 WEILKRDYPVGSVVEVTVVGMTTFGAFARILPGIDGLIHISQIADHRIEKPQDVLAIGDV 621

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V + D D D+ +I LS++
Sbjct: 622 VKVAITDIDFDKKRISLSIR 641


>gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 692

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 8/123 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           VE     +NI DD  VKI          SL   +   +     T+  EV  +  G+VV +
Sbjct: 502 VEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNL 561

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           +DFGAFV      +GL+H+S++S E V K SD +  GD V VK+L  D +  KI LS+K 
Sbjct: 562 LDFGAFVEVSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKA 621

Query: 690 VDQ 692
           + +
Sbjct: 622 LKE 624



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D  E  ++  G+V ++ DFGAFV   G+ DGL+H+S ++  RV    DV+  GD + VK+
Sbjct: 461 DELEEGQVITGKVARLTDFGAFVEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKI 519

Query: 675 LDFD-DRGKIKLSMK 688
           L  + ++ +I L  K
Sbjct: 520 LKLNKEKNRISLGRK 534


>gi|303250647|ref|ZP_07336844.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252904|ref|ZP_07534793.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650635|gb|EFL80794.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859693|gb|EFM91717.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 779

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|6175044|sp|P50889|RS1_LEULA RecName: Full=40S ribosomal protein S1
 gi|1565296|gb|AAB08978.1| ribosomal protein S1 homolog; sequence specific DNA-binding protein
           [Leuconostoc lactis]
          Length = 429

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAFV   G  DGLVH+S++S +RV   +DV+ +GD V VK+L  D
Sbjct: 230 VGEVVEGTVARLTDFGAFVDLGGV-DGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD 288

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 289 TEKGRISLSIK 299



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V VK+LD     
Sbjct: 318 VLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAE 377

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 378 ERISLSMKALEE 389


>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
 gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
          Length = 241

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 15/233 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +  +VG+L    GS+    G T+ +V    G RE    +  +    R 
Sbjct: 15  RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTE-VVAAVYGPREPP--MRGMVLPDRA 71

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSEITE 431
                Y+  P +T E  +  APSRREI   ++ R A+   +  T  FP T+  +  E+  
Sbjct: 72  VIRCRYHMAPFSTDE-RKNPAPSRREIELSKVIREALEATI-LTHLFPRTIIDVFIEVIR 129

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +  A +  +SLAL DAG+P+   VAG+A+G V+      ++ DI   ED  G  D 
Sbjct: 130 ADGGTRTAALTAASLALADAGIPMKGLVAGVAVGKVQG----TLVLDIDELEDMYGEADM 185

Query: 492 KVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            VA   S   I  +Q++   G +       AL+ A  G   I     KVL+E 
Sbjct: 186 PVAAIPSLNKIVLLQLN---GVLEPREFPQALKLAWEGIKKIHAMQKKVLAEK 235


>gi|169785967|ref|XP_001827444.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Aspergillus oryzae RIB40]
 gi|83776192|dbj|BAE66311.1| unnamed protein product [Aspergillus oryzae]
          Length = 1229

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + K+Y G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD+V  G 
Sbjct: 253 LDDAPILYKVYDGRVTGVKDFGAFVNLSGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 312

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            V VK++      +I LSMK VDQ TG
Sbjct: 313 PVKVKVISIQG-SRIGLSMKEVDQVTG 338


>gi|313230404|emb|CBY18619.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P+V KIY G+V  +  FG F+   G     +GL HIS+L +ERV + SDVV     V VK
Sbjct: 228 PQVGKIYNGKVTSLKHFGCFITVEGLLKPIEGLCHISELRSERVNEVSDVVARFQQVKVK 287

Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696
           +L F    +  LSMK VDQ TG+
Sbjct: 288 VLSFSG-TRTSLSMKDVDQATGE 309


>gi|330827877|ref|YP_004390829.1| paral putative RNase R [Aeromonas veronii B565]
 gi|328803013|gb|AEB48212.1| Paral putative RNase R [Aeromonas veronii B565]
          Length = 785

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 5/93 (5%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  I+D VPE+  + +G V  V +FGAFV     +DGLVHIS L+   V    +VVK
Sbjct: 652 KEGVEQISDLVPEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVK 709

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            GD V VK+L+ D  R +I L+M+ +D+  G+P
Sbjct: 710 AGDIVRVKVLEVDAPRKRISLTMR-LDEKAGQP 741


>gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 692

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 8/123 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           VE     +NI DD  VKI          SL   +   +     T+  EV  +  G+VV +
Sbjct: 502 VEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNL 561

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           +DFGAFV      +GL+H+S++S E V K SD +  GD V VK+L  D +  KI LS+K 
Sbjct: 562 LDFGAFVEVSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKA 621

Query: 690 VDQ 692
           + +
Sbjct: 622 LKE 624



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D  E  ++  G+V ++ DFGAFV   G+ DGL+H+S ++  RV    DV+  GD + VK+
Sbjct: 461 DELEEGQVITGKVARLTDFGAFVEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKI 519

Query: 675 LDFD-DRGKIKLSMK 688
           L  + ++ +I L  K
Sbjct: 520 LKLNKEKNRISLGRK 534


>gi|225374882|ref|ZP_03752103.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM
           16841]
 gi|225213265|gb|EEG95619.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM
           16841]
          Length = 365

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 43/196 (21%)

Query: 528 RLHILNEMSKVLSESRL-QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           R  I+ +  ++L E +L Q  E   ++++  +    ++NV   G  +  G     GA   
Sbjct: 165 RRRIIGDRKQLLVEKKLEQQKELFAKIKVGDVMEGTVKNVTDFGAFIDLG-----GA--- 216

Query: 587 IDDDGTVKIASSSLAEIEAAREM----------IRSITDVP------------------- 617
              DG + I+  S   +E+ +++          I+ I D                     
Sbjct: 217 ---DGLLHISEMSWGRVESPKKVFNVGDTVKVFIKDINDTKIALSMKFPSENPWNGAAEK 273

Query: 618 -EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             V  I KG+V ++ DFGAFV      D L+H+SQ+S + V K +DV+K G  +  K++D
Sbjct: 274 FAVGNIVKGKVARMTDFGAFVELAPGVDALLHVSQISKDHVEKPADVLKIGQEIEAKVVD 333

Query: 677 FD-DRGKIKLSMKVVD 691
           F+ D  KI LS+K ++
Sbjct: 334 FNEDDKKISLSIKALE 349


>gi|2330910|gb|AAC45837.1| similar to Bordetella pertussis toxin accessory protein encoded by
           GenBank Accession Number X95386 [Neisseria gonorrhoeae]
          Length = 265

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 137 EGIHEISDL-QVGMILEGLVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 195

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 196 DVVKVKVLEVDAARKRIALTMRLDDEPGG 224


>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
 gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
          Length = 401

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D  D
Sbjct: 285 IFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LS+K  D N 
Sbjct: 345 R-RISLSIKAADSNA 358



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FGAF+   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 255

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 256 NDRNRISLSIK 266


>gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
 gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
           ARMAN-4_'5-way FS']
          Length = 235

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 116/239 (48%), Gaps = 21/239 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R + A+ G++    GS+ F  G+T+AI  V        ++++ ++   + 
Sbjct: 5   RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVN---KG 61

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP--VLPQTAQFPYTLRIVSEIT 430
             +  Y+ LP +  + +R G   RR+I   ++   A++   +L +  +    +RI   IT
Sbjct: 62  IIVCKYDMLPFSVPDRARPGM-DRRDIEISQVITNALNRAVILEEMPRAMVNVRIY--IT 118

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL---G 487
           ++D  +  A++  +S+A  DAG+P+   VA +A G + D     I  D++ +E+     G
Sbjct: 119 QADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDS----ICLDLTKEEEDFHEGG 174

Query: 488 HMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             D  +A   + + I  +Q+D   G ++   +   ++  K+G + I  E+ K   + R 
Sbjct: 175 ATDVPIALLPSKNEIVLLQLD---GKVTREELKKVIEMGKKGAMEIY-ELEKAALKRRF 229


>gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R126a Mutant From Aquifex Aeolicus
          Length = 255

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y+ LP AT + +       R+G  +  EI   R+  RA+   +  T     T+ 
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGRTH-EIQ--RMIGRAMRTAVELTKIGERTIW 113

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG ++ A + G+ +A+ DA +           PI   VA +++G+V D    
Sbjct: 114 VDCDVIQADGGTATAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            IL D++ +ED    +D  V GT SG
Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195


>gi|257456491|ref|ZP_05621687.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
           35580]
 gi|257446151|gb|EEV21198.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
           35580]
          Length = 801

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVK 673
           D  +VN I KG V K+ DFGAFV      +GLVHIS+ S  ++V+K SD+VK GD V   
Sbjct: 512 DKFQVNDIVKGHVTKITDFGAFVELSEGIEGLVHISEFSWVKKVSKPSDMVKIGDEVECM 571

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L +D   G++ L +K V  N
Sbjct: 572 ILGYDIQAGRVSLGLKQVTAN 592



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSES--RLQLGE----FTPRVEIMAIPPDQIRNVIGM 569
           ++   LQ A R +  +   ++K++++S   + LG     F P  +  A   D+  +++G 
Sbjct: 327 VLRKKLQNAYRDKTPVTGVITKLVNKSGYDVDLGANMIAFLPISQAAAQKVDKPESLLGQ 386

Query: 570 GGK--VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            G   + + + ++ G + NI     V         +E  RE     T++ +V    KG V
Sbjct: 387 KGSFYIEKMVFDRKGNRDNI----VVNRRKYLEDTVEKNREAFFENTNIGDV---VKGAV 439

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686
                FGAF+   G  DGL+HI+ +S   V +  D VK+G  + +K++  D   K I LS
Sbjct: 440 KSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIDLKVIRLDPAEKRINLS 498

Query: 687 MK 688
           +K
Sbjct: 499 LK 500



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 40/169 (23%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------------VNIDDDGTVKIASSSLA 601
           ++ A P D I     +G ++ R +V+ T A             +++DD    K      +
Sbjct: 588 QVTANPWDNIDERYPVGTRLTRKVVKLTNAGAFIELEEGIDGFLHVDDLSWTKRVRHPNS 647

Query: 602 EIEAAREM-----------------IRSITDVP--------EVNKIYKGQVVKVMDFGAF 636
           E+E  +E+                 ++ ++D P        +   I +G+V  V DFG F
Sbjct: 648 ELEVGQELEVIVIECNPAEHRIRLGVKQLSDDPWKTFAEAYKPGSIVEGEVTSVTDFGIF 707

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFDDRGK 682
           V   G  +GL+H   L   R     +V+K+   GD V   +LD + + K
Sbjct: 708 VKVPGGIEGLIHKQNLVENREDNPDEVLKKYAVGDKVKATVLDVNVKDK 756


>gi|300856020|ref|YP_003781004.1| putative 30S ribosomal protein S1 [Clostridium ljungdahlii DSM
           13528]
 gi|300436135|gb|ADK15902.1| predicted 30S ribosomal protein S1 [Clostridium ljungdahlii DSM
           13528]
          Length = 392

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           VN I +G V K+++ GAFV      +GLVHIS++S E +AK SDV+K GD V VK+LD +
Sbjct: 285 VNDIIEGTVSKIINIGAFVEIEPGVEGLVHISEISEEHIAKPSDVLKVGDRVKVKILDIN 344

Query: 679 DR-GKIKLSMK 688
            +  +I LS+K
Sbjct: 345 TKDSRISLSIK 355



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V ++  FGAF+   G  +GL HIS+LS  R+   S+VV  GD V V +L+ D D+ +
Sbjct: 205 KGVVSRLTGFGAFIDLGGV-EGLAHISELSWRRIKNPSEVVSVGDCVEVYVLNADKDKNR 263

Query: 683 IKLSMKVVDQN 693
           I LS+K   +N
Sbjct: 264 ISLSLKDTKKN 274


>gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 687

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 19/206 (9%)

Query: 505 MDMKIGGISE--NIMVMALQQAKRGRLHILN---EMSKVLSESRLQLGEFTPRVEIMAIP 559
            D+KI  I E  N +V++ +    G+L  L    E  +V++    +L +F   VE+  + 
Sbjct: 430 WDLKIVSIDERKNRLVLSRKDVVEGQLDELWDELEEGQVVTGKVARLTDFGAFVEVNGL- 488

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRS 612
            D + +V      +    VE     +N+ D+  VKI          SL   +   +   +
Sbjct: 489 -DGLLHV----SDIAWSRVEHPSDVLNVGDEVEVKILKLNKEKNRISLGRKQLLEKPFEA 543

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
             +  EV  +  G+VV ++DFGAFV      +GLVH+S++S E V K SD +  GD + V
Sbjct: 544 FANQHEVGDVVTGKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEV 603

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K++  D +  K+ LS+K + +   +P
Sbjct: 604 KIISLDKEEEKVGLSIKALKEAPERP 629


>gi|307544277|ref|YP_003896756.1| ribonuclease RNAse H [Halomonas elongata DSM 2581]
 gi|307216301|emb|CBV41571.1| K06959 [Halomonas elongata DSM 2581]
          Length = 784

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + ++ D+ E   + +G V  V  FGAFV     +DGLVHIS LS + V     VVK 
Sbjct: 645 REGVETLKDL-EPGMVLEGSVTNVTHFGAFVDIGVHQDGLVHISALSNKFVEDPRSVVKA 703

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+++ D +R +I LSM++ DQ
Sbjct: 704 GDIVKVKVMNVDLERSRIGLSMRLDDQ 730


>gi|72160504|ref|YP_288161.1| RNA binding S1:resolvase, RNase H-like fold [Thermobifida fusca YX]
 gi|71914236|gb|AAZ54138.1| RNA binding S1:Resolvase, RNase H-like fold [Thermobifida fusca YX]
          Length = 777

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 24/157 (15%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV------KIASSSLAEIE------------ 604
           +R ++   G+ IR ++  T    ++  D  V         +  LAE+E            
Sbjct: 577 VRRILEATGRDIRALIGDTDTLRSLRPDDFVDERFGLPTVTDILAELEKPGRDPRPEFQT 636

Query: 605 -AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            A R+ +  ITD+ E   + +G V  V  FGAFV      DGLVH+S +S   V    DV
Sbjct: 637 AAFRDGVEDITDL-EPGMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMSKSFVKDPRDV 695

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKV---VDQNTGK 696
           VK GD V VK+LD D  R +I L++++   VDQ +G+
Sbjct: 696 VKPGDIVRVKVLDVDVRRKRISLTLRLDDEVDQRSGE 732


>gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
           DSM 20548]
 gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
           DSM 20548]
          Length = 686

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           VE     +N+ D+  VKI          SL   +   +   +  +  EV  +  G+VV +
Sbjct: 502 VEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVTGKVVNL 561

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           +DFGAFV      +GLVH+S++S E V K SD +  GD + VK++  D D  K+ LS+K 
Sbjct: 562 LDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKVGLSIKA 621

Query: 690 VDQNTGKP 697
           + +   +P
Sbjct: 622 LKEAPERP 629


>gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
 gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11]
 gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281491326|ref|YP_003353306.1| 50S ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
 gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
 gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11]
 gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
 gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           NZ9000]
 gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
          Length = 408

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +V +FGAFV   G  DGLVH+S+LS  R+ + SD VK GD V VK+L  D + 
Sbjct: 197 IVEGTVSRVTNFGAFVDLGGI-DGLVHVSELSHSRIKRPSDAVKPGDVVNVKILKLDPEA 255

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 256 GRLSLSLK 263



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V    +G V ++ DFGAFV      +GLVH+SQ+S ERV    DV+K G  V VK+LD  
Sbjct: 279 VGSTVEGTVKRLTDFGAFVELYPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVK 338

Query: 679 D-RGKIKLSMKVVDQNTGKP 697
               +I LS+K +++   +P
Sbjct: 339 PAEERISLSIKALEEAPARP 358


>gi|225017261|ref|ZP_03706453.1| hypothetical protein CLOSTMETH_01187 [Clostridium methylpentosum
           DSM 5476]
 gi|224950036|gb|EEG31245.1| hypothetical protein CLOSTMETH_01187 [Clostridium methylpentosum
           DSM 5476]
          Length = 157

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V KI +G+V  + +FGAF+     + G+VHIS++S   V + +D +KEG+ V VK+L  
Sbjct: 4   DVGKIVEGKVTGITNFGAFIDLGEGKTGMVHISEVSAGYVKEIADHLKEGEQVKVKVLKV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       +P
Sbjct: 64  GDDGKISLSIKQAQPQAPRP 83


>gi|87306426|ref|ZP_01088573.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
 gi|87290605|gb|EAQ82492.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
          Length = 636

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D  + N++ KG+V K+ +FG FV      +GL+HIS+L+ E+V    DVVK GD + 
Sbjct: 472 SIPDKYQPNQLVKGKVTKITNFGVFVGLEDGLEGLLHISELADEKVENPEDVVKVGDDIE 531

Query: 672 VKLLDFD-DRGKIKLSMKVV 690
           VK+L  D D  KI LS K V
Sbjct: 532 VKILRVDTDERKIGLSRKRV 551



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 7/118 (5%)

Query: 577 IVEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVM 631
           I +  G KV  +    D+    I  S  + IE  R+  R S+    E+ +  KG V  + 
Sbjct: 172 IADYIGKKVECEVLKIDEERRNIVVSRRSLIEKKRQKDRDSLLQELEIGQRRKGVVKNIA 231

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DFGAFV   G  DGL+HI+ +S  R+   ++VVK  D V V++L+ D +R KI L MK
Sbjct: 232 DFGAFVDLGGI-DGLLHITDMSWGRIGHPTEVVKIDDEVEVQILNIDHERQKIALGMK 288



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +GQVV VM +GAFV      +GLVHIS++S T+R++  S+VV  GD + V +L  + ++ 
Sbjct: 309 RGQVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQ 368

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L MK    N  + I
Sbjct: 369 EISLGMKQTQSNPWENI 385



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I KG+V  + ++GAFV      DGL+H+S +S T ++   S+++++G  V  K+L+ 
Sbjct: 391 VESIVKGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNI 450

Query: 678 -DDRGKIKLSMKVVD 691
            +DR +I L +K +D
Sbjct: 451 EEDRRRIALGLKQMD 465


>gi|291523544|emb|CBK81837.1| Ribosomal protein S1 [Coprococcus catus GD/7]
          Length = 235

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D   V  IY G+V ++  FGAFV F     GLVHISQ++ + +   ++VVK GD V VK+
Sbjct: 124 DAVNVGDIYDGKVERITSFGAFVGFADDLSGLVHISQMANKHIESPNEVVKVGDEVKVKV 183

Query: 675 LDFDDRGKIKLSMK 688
           +   D GKI LSMK
Sbjct: 184 IGKKD-GKISLSMK 196


>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
          Length = 242

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 19/221 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---QYVDSLSGT 369
           R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +   Q V+S    
Sbjct: 11  RVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAV-YGPREVQNKGQQVNSKEAL 69

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
            R ++ M   F   +TG+  R     RR      + R+ +   +  T   P++ + I  +
Sbjct: 70  VRCEYRMA-EF---STGDRRRKPKGDRRSTEISLVIRQTMEASI-LTHLMPHSQIDIYVQ 124

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED  G 
Sbjct: 125 VLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCS----TPLLDLNYLEDSAGG 180

Query: 489 MDFKV---AGTDSGITAMQMDMKIG-GISENIMVMALQQAK 525
            D  V   A  D  +T +QMD K+     EN+M +A++  K
Sbjct: 181 SDVTVGILAKMDK-VTLLQMDAKLPIDTFENVMGLAIEGCK 220


>gi|261365311|ref|ZP_05978194.1| protein YhgF [Neisseria mucosa ATCC 25996]
 gi|288566239|gb|EFC87799.1| protein YhgF [Neisseria mucosa ATCC 25996]
          Length = 757

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEARG 716


>gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 259

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGRDS ++R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ +P AT       S  G  S R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITSEYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL+DA            +PI   VA +++G+V  G++ ++  
Sbjct: 119 VIQADGGTRTASITGSFVALVDAMNKLKEKGAISKLPIKSFVAAVSVGIV--GNEKLL-- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED   H+D  +  TD G
Sbjct: 175 DLCYLEDSNAHVDMNIVMTDKG 196


>gi|291300160|ref|YP_003511438.1| RNA binding S1 domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569380|gb|ADD42345.1| RNA binding S1 domain protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 783

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  V  FGAFV     +DGLVHIS +S + VA   DV K GD V V++L+ D+ R
Sbjct: 655 VLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNDYVADPRDVAKPGDIVKVRVLEVDEAR 714

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ D+   KP
Sbjct: 715 KRISLTMRLQDKAEAKP 731


>gi|158321498|ref|YP_001514005.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158141697|gb|ABW20009.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 718

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V+DFGAFV     +DGLVH+S+LS   V    DVV  GD V VK++  D +R
Sbjct: 648 IMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVKNAMDVVSVGDEVKVKIIGLDIER 707

Query: 681 GKIKLSMKVV 690
           GKI LS+K V
Sbjct: 708 GKISLSIKQV 717


>gi|117621065|ref|YP_854833.1| S1 RNA-binding domain-containing protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562472|gb|ABK39420.1| S1 RNA binding domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 834

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 5/93 (5%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  I+D VPE+  + +G V  V +FGAFV     +DGLVHIS L+   V    +VVK
Sbjct: 703 KEGVEKISDLVPEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVK 760

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            GD V VK+L+ D  R +I L+M+ +D+  G+P
Sbjct: 761 AGDIVRVKVLEVDVPRKRISLTMR-LDEKAGQP 792


>gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R86a Mutant From Aquifex Aeolicus
          Length = 255

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y+ LP AT + +       R+G  +  EI   R+  RA+   +  T     T+ 
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGATH-EIQ--RMIGRAMRTAVELTKIGERTIW 113

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A + G+ +A+ DA +           PI   VA +++G+V D    
Sbjct: 114 VDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            IL D++ +ED    +D  V GT SG
Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195


>gi|28378535|ref|NP_785427.1| 30S ribosomal protein S1 [Lactobacillus plantarum WCFS1]
 gi|254556749|ref|YP_003063166.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
 gi|300767480|ref|ZP_07077392.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180692|ref|YP_003924820.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271371|emb|CAD64276.1| ribosomal protein S1 [Lactobacillus plantarum WCFS1]
 gi|254045676|gb|ACT62469.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
 gi|300495299|gb|EFK30455.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046183|gb|ADN98726.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 429

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ +FGAFV   G  DGLVH+S++S ERV K +DV+K G  V VK+L  D DR
Sbjct: 206 VVEGKVARLTNFGAFVDLGGI-DGLVHVSEISYERVEKPADVLKVGQEVTVKILSVDADR 264

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 265 ERVSLSIK 272



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           +  G+V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G  + VK+LD   D 
Sbjct: 291 VLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKVKVLDVRPDE 350

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 351 KRLALSIKALEE 362


>gi|157676014|emb|CAP07848.1| putative transcriptional accessory protein [Neisseria macacae]
          Length = 757

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|319638887|ref|ZP_07993645.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
 gi|317399791|gb|EFV80454.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
          Length = 757

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|153005162|ref|YP_001379487.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5]
 gi|152028735|gb|ABS26503.1| ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5]
          Length = 578

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V KV DFGAFV      +GLVH+S++  ERV    DVV EG  V VK++D D    K
Sbjct: 477 KGKVTKVTDFGAFVEIEPGIEGLVHVSEMKDERVENPRDVVTEGQEVEVKVIDMDLHERK 536

Query: 683 IKLSMKVVDQNTGK 696
           I LS+K ++++ G+
Sbjct: 537 IALSIKQLNRDGGE 550



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G+VV + D+GAF+      +GLVH+S++S T+RV   S +V +GD V   +LD D + K
Sbjct: 303 RGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNQGDQVEAVVLDIDPKAK 362

Query: 683 -IKLSMKVVDQN 693
            I L MK ++ N
Sbjct: 363 RISLGMKQIEAN 374



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D D   K  S  + +IEA    +  + D   +    +G+V  V DFG FV      D
Sbjct: 353 VVLDIDPKAKRISLGMKQIEANPWTL--LEDKYPIGTTIRGEVRNVTDFGVFVGVEEGID 410

Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           GLVH+S +S TER+    D  K+GD V   +L+ D
Sbjct: 411 GLVHVSDISWTERIKHPGDKFKKGDVVEAVVLNID 445



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KGQV  + D+GAF+   G  DGL+H++ +S  R+   S++ + G  V V +L FD   
Sbjct: 216 ILKGQVKNLTDYGAFIDLGGI-DGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPAS 274

Query: 682 -KIKLSMKVVDQN 693
            ++ L +K + ++
Sbjct: 275 ERVSLGLKQIQED 287


>gi|87308954|ref|ZP_01091092.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
 gi|87288297|gb|EAQ80193.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
          Length = 536

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 598 SSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+ A  E A+E  R  T V  +V ++  G V ++ DFGAFV   G  DGLVH+SQ+S +R
Sbjct: 306 SARAVAEKAKEDSRKETMVTLQVGQMRDGTVTRLQDFGAFVDIGGV-DGLVHVSQISWDR 364

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           V   SD + EG  V VK+   D + GKI LS++   +N
Sbjct: 365 VKHPSDALSEGQAVRVKVTKIDPETGKIGLSIRDTLEN 402



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V K+MDFGAFV      +GLVH+S++S  RV++   V+K G+ V VK+++ D
Sbjct: 413 VGAIINGKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKAGEKVEVKVVNID 472

Query: 679 -DRGKIKLSMKVV 690
            ++ +I LS+K +
Sbjct: 473 KEKRRIGLSIKAL 485


>gi|1098475|gb|AAC37046.1| region E; orf; homologous to E. coli o622, Accession Number U18997
           [Neisseria meningitidis]
          Length = 757

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
 gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
 gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
          Length = 243

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 15/193 (7%)

Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE--DEQY 362
           V+LD+  +R DGR     R +    G+L   +GS+    GD + I+    G R+   +  
Sbjct: 9   VLLDENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNK-ILAGIFGPRDVHPKHM 67

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           V + +G  R      Y+  P +  E  +  APSRREI   ++ + A+ P L    QFP T
Sbjct: 68  VRTETGILR----CRYHMSPFSVSE-RKKPAPSRREIEISKVIKEALEPSL-MLEQFPRT 121

Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + +  E+ ++DG S  A +  +S+AL DAG+P+   V+  A G V D     I+ D++ 
Sbjct: 122 AVDVFIEVLQADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVAD----TIVLDVNN 177

Query: 482 DEDHLGHMDFKVA 494
           +ED  G  D  V 
Sbjct: 178 EEDQAGQADMPVG 190


>gi|58266336|ref|XP_570324.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134111338|ref|XP_775811.1| hypothetical protein CNBD5400 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258475|gb|EAL21164.1| hypothetical protein CNBD5400 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226557|gb|AAW43017.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1189

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG----------ARDGLVHISQLSTERVAKTS 661
           ++ + P + KIY G +  + DFGAFV   G          + +GL+H+S ++  RV    
Sbjct: 216 TVDERPVLYKIYNGTIANITDFGAFVTLDGVERKIDGNQRSNEGLIHVSNITNGRVNSPR 275

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D +K G  V VK++      KI LSMK VDQNTG
Sbjct: 276 DFLKRGQRVKVKVMAVSP--KIGLSMKDVDQNTG 307


>gi|325129123|gb|EGC51971.1| S1 RNA binding domain protein [Neisseria meningitidis N1568]
 gi|325133149|gb|EGC55820.1| S1 RNA binding domain protein [Neisseria meningitidis M6190]
 gi|325138765|gb|EGC61317.1| S1 RNA binding domain protein [Neisseria meningitidis ES14902]
          Length = 757

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|325094232|gb|EGC47542.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H88]
          Length = 1226

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 7/89 (7%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD+V +G 
Sbjct: 250 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQAGARVNHPSDLVSKGQ 309

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
            V VK++    +G ++ LSMK VDQ TG+
Sbjct: 310 PVKVKVITI--QGIRVGLSMKEVDQGTGR 336


>gi|261391621|emb|CAX49059.1| putative RNA-binding protein [Neisseria meningitidis 8013]
          Length = 757

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|269214158|ref|ZP_05983718.2| protein YhgF [Neisseria cinerea ATCC 14685]
 gi|269144370|gb|EEZ70788.1| protein YhgF [Neisseria cinerea ATCC 14685]
          Length = 761

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 633 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 691

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 692 DVVKVKVLEVDAARKRIALTMRLDDEAGG 720


>gi|161869094|ref|YP_001598260.1| transcriptional accessory protein Tex, putative [Neisseria
           meningitidis 053442]
 gi|161594647|gb|ABX72307.1| transcriptional accessory protein Tex, putative [Neisseria
           meningitidis 053442]
          Length = 758

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 630 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 688

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 689 DVVKVKVLEVDAARKRIALTMRLDDEPGG 717


>gi|241758917|ref|ZP_04757029.1| protein tex [Neisseria flavescens SK114]
 gi|241320738|gb|EER56971.1| protein tex [Neisseria flavescens SK114]
          Length = 757

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|257784765|ref|YP_003179982.1| RNA binding S1 domain-containing protein [Atopobium parvulum DSM
           20469]
 gi|257473272|gb|ACV51391.1| RNA binding S1 domain protein [Atopobium parvulum DSM 20469]
          Length = 418

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V+ I +G V K++ FGAFV      +GLVHIS+++ + V   S V K GD V VK+++ D
Sbjct: 291 VDAIIEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKQHVTAPSQVCKVGDVVQVKVMEID 350

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LSMK   +  G
Sbjct: 351 LDRRRISLSMKAAAETLG 368



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  +++FGAFV   G  DGLVHIS+LS   V   S+VVK G  V V++LD D +R +
Sbjct: 211 KGTVSSIVEFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRER 269

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   ++  + +V
Sbjct: 270 ISLGLKQTSEDPWRVLV 286


>gi|227485051|ref|ZP_03915367.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236884|gb|EEI86899.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 692

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+VV ++DFGAFV      +GLVH+S++S + V K SD +  GDT+ VK++  
Sbjct: 552 QVGDVVEGKVVNLLDFGAFVEVADGVEGLVHVSEISWDHVEKPSDELNVGDTIEVKIISI 611

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D D  K+ LS+K + +   +P
Sbjct: 612 DKDEEKVGLSIKALKEAPERP 632



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D  E  ++ KG+V ++ DFGAFV   G  DGL+H+S ++  RV   SDV+  GD + V
Sbjct: 462 LWDELEEGQVVKGKVARLTDFGAFVEVNGL-DGLLHVSDIAWTRVEHPSDVLNVGDEIEV 520

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  + ++ +I L  K
Sbjct: 521 KILKLNKEKNRISLGRK 537


>gi|269214248|ref|ZP_06158449.1| protein YhgF [Neisseria lactamica ATCC 23970]
 gi|269210237|gb|EEZ76692.1| protein YhgF [Neisseria lactamica ATCC 23970]
          Length = 283

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 155 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 213

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 214 DVVKVKVLEVDAARKRIALTMRLDDEPGG 242


>gi|119479157|ref|XP_001259607.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya
           fischeri NRRL 181]
 gi|119407761|gb|EAW17710.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya
           fischeri NRRL 181]
          Length = 1230

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + K+Y G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD+V  G 
Sbjct: 255 LDDQPILYKVYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            V VK++      +I LSMK VDQ TG  +V
Sbjct: 315 PVKVKVISIQG-SRIGLSMKEVDQVTGLDLV 344


>gi|15676011|ref|NP_273139.1| putative transcriptional accessory protein Tex [Neisseria
           meningitidis MC58]
 gi|9978037|sp|Q51152|YHGF_NEIMB RecName: Full=Uncharacterized protein NMB0075
 gi|7225295|gb|AAF40542.1| putative transcriptional accessory protein Tex [Neisseria
           meningitidis MC58]
 gi|316985915|gb|EFV64854.1| protein yhgF [Neisseria meningitidis H44/76]
 gi|325141225|gb|EGC63724.1| S1 RNA binding domain protein [Neisseria meningitidis CU385]
 gi|325199301|gb|ADY94756.1| S1 RNA binding domain protein [Neisseria meningitidis H44/76]
 gi|325205168|gb|ADZ00621.1| S1 RNA binding domain protein [Neisseria meningitidis M04-240196]
          Length = 757

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
          Length = 261

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      EV++ G PS R +   RL  R++  V+        T+ I  
Sbjct: 59  WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL DA            +P+   VA +++G+V +G++ +  
Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIV-EGNELL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S  ED    +D  V  TD G I  +Q   + G  ++  +   L  A+ G   I+   
Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQ 233

Query: 536 SKVLSE 541
            +VLS+
Sbjct: 234 KEVLSD 239


>gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
 gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
          Length = 248

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +E VR      G  +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASI----EDKVPPFLKGQGE 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 YN LP +TG     +++R+    R  EI   RL  RA+  V+   A    T+ I
Sbjct: 57  GWITAEYNMLPRSTGTRKVRDIARLKVDGRTMEIQ--RLIGRALRSVMDLKALGEKTIWI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +   ++ G+ +AL+DA             PI K V+  ++G++ D     
Sbjct: 115 DCDVIQADGGTRTTSITGAFVALVDAVNKLHKEKPFEVYPIRKFVSATSVGILNDEK--- 171

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+  +ED    +D  V  TD G
Sbjct: 172 -ILDLCYEEDSNAKVDMNVIATDEG 195


>gi|313667392|ref|YP_004047676.1| RNA-associated protein [Neisseria lactamica ST-640]
 gi|313004854|emb|CBN86280.1| putative RNA-associated protein [Neisseria lactamica 020-06]
          Length = 757

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
 gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
          Length = 261

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      EV++ G PS R +   RL  R++  V+        T+ I  
Sbjct: 59  WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL DA            +P+   VA +++G+V DG+  +  
Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDISKIPLKGFVAAVSVGIV-DGNKLL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S  ED    +D  V  TD G I  +Q   + G  ++  +   L  A+ G   I+   
Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQ 233

Query: 536 SKVLSE 541
            +VLS+
Sbjct: 234 KEVLSD 239


>gi|149513007|ref|XP_001514955.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8,
           partial [Ornithorhynchus anatinus]
          Length = 468

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
           R   + P +  IY+G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +
Sbjct: 234 RPPPEEPSIGDIYQGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSK 293

Query: 667 GDTVWVKLLDFDDRGKIKLSMK 688
           G  V VK+L F    K  LSMK
Sbjct: 294 GQRVKVKVLSFTGT-KTSLSMK 314


>gi|315052548|ref|XP_003175648.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Arthroderma gypseum CBS 118893]
 gi|311340963|gb|EFR00166.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Arthroderma gypseum CBS 118893]
          Length = 1217

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAK 659
           E  R     + D P + KIY G+V  + DFG FV+  G R   DGLVH+S +    RV  
Sbjct: 232 EFRRPPTLEVDDRPILFKIYDGKVTGIKDFGVFVNLQGVRGRVDGLVHVSAMQEGARVNH 291

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 292 PSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 326


>gi|313884085|ref|ZP_07817851.1| putative ribosomal protein S1 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620532|gb|EFR31955.1| putative ribosomal protein S1 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 438

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 59/90 (65%), Gaps = 7/90 (7%)

Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE EA R E ++++    E   I +G V ++++FGAF+   G  DGLVHIS+++ E VAK
Sbjct: 195 AEREAKRAERLQTL----EEGSIIEGTVARIVNFGAFIDLDGV-DGLVHISRIAHEHVAK 249

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            SD +  G+TV VK+L  D + G++ LS+K
Sbjct: 250 PSDYLTPGETVKVKVLSVDLEEGRVSLSIK 279



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V ++ DFGAFV      +GLVHISQ+S E +A  +D ++EG  + VK+L  D + 
Sbjct: 298 VLKGTVKRLTDFGAFVEVFPGVEGLVHISQISHEHIATPADKLEEGQEIDVKVLSVDPEE 357

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 358 HRLSLSIKALEE 369


>gi|254671507|emb|CBA09093.1| putative transcription accessory protein [Neisseria meningitidis
           alpha153]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|59802211|ref|YP_208923.1| hypothetical protein NGO1895 [Neisseria gonorrhoeae FA 1090]
 gi|240015149|ref|ZP_04722062.1| hypothetical protein NgonD_11018 [Neisseria gonorrhoeae DGI18]
 gi|240017597|ref|ZP_04724137.1| hypothetical protein NgonFA_10626 [Neisseria gonorrhoeae FA6140]
 gi|240081741|ref|ZP_04726284.1| hypothetical protein NgonF_10618 [Neisseria gonorrhoeae FA19]
 gi|240114017|ref|ZP_04728507.1| hypothetical protein NgonM_10706 [Neisseria gonorrhoeae MS11]
 gi|240122220|ref|ZP_04735182.1| hypothetical protein NgonPI_10740 [Neisseria gonorrhoeae PID24-1]
 gi|240124510|ref|ZP_04737466.1| hypothetical protein NgonP_11353 [Neisseria gonorrhoeae PID332]
 gi|254494775|ref|ZP_05107946.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291]
 gi|268597839|ref|ZP_06132006.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268600083|ref|ZP_06134250.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11]
 gi|268683144|ref|ZP_06150006.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332]
 gi|293398254|ref|ZP_06642459.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62]
 gi|59719106|gb|AAW90511.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|226513815|gb|EEH63160.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291]
 gi|268551627|gb|EEZ46646.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268584214|gb|EEZ48890.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11]
 gi|268623428|gb|EEZ55828.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332]
 gi|291611517|gb|EFF40587.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|325143290|gb|EGC65626.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
 gi|325143323|gb|EGC65657.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
 gi|325143350|gb|EGC65683.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|261379513|ref|ZP_05984086.1| protein YhgF [Neisseria subflava NJ9703]
 gi|284797976|gb|EFC53323.1| protein YhgF [Neisseria subflava NJ9703]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|331268721|ref|YP_004395213.1| rpsA [Clostridium botulinum BKT015925]
 gi|329125271|gb|AEB75216.1| rpsA [Clostridium botulinum BKT015925]
          Length = 387

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +VN I +G+VVK++DFGAFV      +GLVHI++++ E + K S+V+  GD V VK+L+ 
Sbjct: 284 KVNDIVEGKVVKLLDFGAFVEIEAGVEGLVHITEITDEHIGKPSEVLNIGDKVKVKILEI 343

Query: 678 D-DRGKIKLSMK 688
           + +  KI LS+K
Sbjct: 344 NKEDKKIALSIK 355



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V ++  FGAFV   G  DGL+H S LS +RV   S+VVK GD V V +L FD ++GKI
Sbjct: 206 GIVRRLAKFGAFVDLGGV-DGLIHNSDLSWKRVNDPSEVVKVGDKVEVYVLKFDKEKGKI 264

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K ++++    I+
Sbjct: 265 ALSLKDIEEDPWNNII 280


>gi|325145402|gb|EGC67678.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
 gi|325145448|gb|EGC67723.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|325135189|gb|EGC57814.1| S1 RNA binding domain protein [Neisseria meningitidis M13399]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|218767225|ref|YP_002341737.1| putative transcriptional accessory protein [Neisseria meningitidis
           Z2491]
 gi|9979534|sp|P57072|YHGF_NEIMA RecName: Full=Uncharacterized protein NMA0194
 gi|121051233|emb|CAM07508.1| putative transcriptional accessory protein [Neisseria meningitidis
           Z2491]
 gi|302028148|gb|ADK90962.1| unknown [Neisseria meningitidis]
 gi|319411440|emb|CBY91852.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|325203201|gb|ADY98654.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240355]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|304388872|ref|ZP_07370922.1| YhgF like protein [Neisseria meningitidis ATCC 13091]
 gi|304337165|gb|EFM03349.1| YhgF like protein [Neisseria meningitidis ATCC 13091]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|240124617|ref|ZP_04737503.1| hypothetical protein NgonSK_00055 [Neisseria gonorrhoeae SK-92-679]
 gi|240129190|ref|ZP_04741851.1| hypothetical protein NgonS_11312 [Neisseria gonorrhoeae SK-93-1035]
 gi|268683184|ref|ZP_06150046.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687573|ref|ZP_06154435.1| transcriptional accessory protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268623468|gb|EEZ55868.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627857|gb|EEZ60257.1| transcriptional accessory protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|331002776|ref|ZP_08326290.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413265|gb|EGG92633.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 232

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E A++  ++  D  +V  + +G+V  + D+GAF+       GL+H+SQ+S +RV   +
Sbjct: 110 EKEEAKKERQAKFDSVKVGDVLEGKVDSIKDYGAFIDLGDGISGLLHVSQISNQRVKNPA 169

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            V+KEG+TV VK+    D GKI LS K +++N
Sbjct: 170 AVLKEGETVKVKVTGIKD-GKISLSKKALEEN 200


>gi|121633956|ref|YP_974201.1| putative transcriptional accessory protein [Neisseria meningitidis
           FAM18]
 gi|120865662|emb|CAM09383.1| putative transcriptional accessory protein [Neisseria meningitidis
           FAM18]
          Length = 758

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 630 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 688

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 689 DVVKVKVLEVDAARKRIALTMRLDDEPGG 717


>gi|296315141|ref|ZP_06865082.1| protein YhgF [Neisseria polysaccharea ATCC 43768]
 gi|296837946|gb|EFH21884.1| protein YhgF [Neisseria polysaccharea ATCC 43768]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDVARKRIALTMRLDDEPGG 716


>gi|291165668|gb|EFE27716.1| S1 RNA binding domain protein [Filifactor alocis ATCC 35896]
          Length = 718

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I ++ D+ E + +  G V  V+DFGAFV      DGLVHIS+LS + V    D+V+ GD 
Sbjct: 635 IMTLDDLKE-DMVLTGTVRNVLDFGAFVDIGLKSDGLVHISELSDKYVKHPLDIVRIGDI 693

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V+++  D +RGK+ LSMK + Q+
Sbjct: 694 VTVRVIKIDRERGKVGLSMKQLPQH 718


>gi|298370332|ref|ZP_06981648.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281792|gb|EFI23281.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|145249326|ref|XP_001401002.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Aspergillus niger CBS 513.88]
 gi|134081680|emb|CAK46614.1| unnamed protein product [Aspergillus niger]
          Length = 1231

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + K+Y G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD+V  G 
Sbjct: 255 LDDQPVLYKVYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQ 314

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            V VK++      +I LSMK VDQ TG
Sbjct: 315 PVKVKVVSIQG-SRIGLSMKEVDQVTG 340


>gi|260771983|ref|ZP_05880900.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
 gi|260612850|gb|EEX38052.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
          Length = 773

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  V +FGAFV     +DGLVHIS L+   +A   DVVK GD V VK+++ 
Sbjct: 649 EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFIADPRDVVKAGDIVKVKVMEV 708

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I LSM++ D+
Sbjct: 709 DAQRKRIALSMRLNDE 724


>gi|254805860|ref|YP_003084081.1| probable transcriptional accessory protein [Neisseria meningitidis
           alpha14]
 gi|254669402|emb|CBA08583.1| probable transcriptional accessory protein [Neisseria meningitidis
           alpha14]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|325197366|gb|ADY92822.1| S1 RNA binding domain protein [Neisseria meningitidis G2136]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 635

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+   ++  S  A +E  RE  R+   +  E N    G VVK+M +GAFV   G  +GL+
Sbjct: 441 DEHKNRLVLSRKAVLEVEREAKRAEALEHIEENTEMDGTVVKIMPYGAFVDL-GGVEGLL 499

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           HIS +S +R+    DV+  GDTV V +  FD +R +I LSMK + +N
Sbjct: 500 HISDISWKRIGAVEDVLSVGDTVHVLVQQFDRERNRISLSMKALQKN 546



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V K+++ GA +       GL+HIS L+ +R A   D+V  GD + VK++  D
Sbjct: 557 VGDVVEGEVKKILNIGAILAIDPEIQGLLHISALTEQRGAAVKDLVAIGDKMQVKIIKID 616

Query: 679 -DRGKIKLSM 687
            D+ K+ LS+
Sbjct: 617 PDKHKVALSV 626


>gi|255075577|ref|XP_002501463.1| predicted protein [Micromonas sp. RCC299]
 gi|226516727|gb|ACO62721.1| predicted protein [Micromonas sp. RCC299]
          Length = 1170

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PEV  IY+G+V  VMDFG FV    F    +GLVH+S +S+++     D V+   +VWVK
Sbjct: 196 PEVGAIYRGRVTNVMDFGCFVELTEFSRKFEGLVHVSMISSQKGVNARDQVQRDQSVWVK 255

Query: 674 LLDFDDRGKIKLSMKVVDQNT 694
           +       ++ LSM+ V+Q+T
Sbjct: 256 VTT-RSATRMALSMRDVNQST 275


>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
 gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
          Length = 402

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D  D
Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LS+K  D N 
Sbjct: 345 R-RISLSIKAADSNA 358



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FGAF+   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 256 NDRHRISLSIK 266


>gi|156032920|ref|XP_001585297.1| hypothetical protein SS1G_13866 [Sclerotinia sclerotiorum 1980]
 gi|154699268|gb|EDN99006.1| hypothetical protein SS1G_13866 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1202

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSD 662
           R +   I D   + KIY G V  V DFGAFV+  G +   DGLVH+S L   +RV   SD
Sbjct: 222 RPLTPEIDDEVNLYKIYDGHVTGVKDFGAFVNIHGVKGKVDGLVHVSALVEGQRVNHPSD 281

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +V     V VK++  +   +I LSMK VDQ TG+
Sbjct: 282 LVSRNQPVKVKVIKIEG-NRIGLSMKDVDQETGE 314


>gi|240118974|ref|ZP_04733036.1| hypothetical protein NgonPID_11052 [Neisseria gonorrhoeae PID1]
 gi|268604688|ref|ZP_06138855.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1]
 gi|268588819|gb|EEZ53495.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1]
          Length = 757

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGIHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
          Length = 403

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D  D
Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LS+K  D N 
Sbjct: 345 R-RISLSIKAADSNA 358



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V  + +G+V ++ +FG F+   G  DGLVHIS++S + V K SDV+K G  V +K++   
Sbjct: 197 VGDVIEGKVSRLTNFGGFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGID 255

Query: 678 DDRGKIKLSMK 688
           DDR +I LS+K
Sbjct: 256 DDRHRISLSIK 266


>gi|227873636|ref|ZP_03991873.1| S1 domain RNA-binding protein [Oribacterium sinus F0268]
 gi|227840507|gb|EEJ50900.1| S1 domain RNA-binding protein [Oribacterium sinus F0268]
          Length = 753

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  + D+ E   + +G V  V+DFGAFV     +DGLVHIS LS + V    DVVK 
Sbjct: 669 REDVLELEDLKE-GMVLQGTVRNVIDFGAFVDIGVHQDGLVHISALSKKFVKHPLDVVKL 727

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+L  D  R KI LSMK V+
Sbjct: 728 GDIVKVKVLSVDVARKKISLSMKDVE 753


>gi|254507323|ref|ZP_05119459.1| S1 RNA binding domain protein [Vibrio parahaemolyticus 16]
 gi|219549783|gb|EED26772.1| S1 RNA binding domain protein [Vibrio parahaemolyticus 16]
          Length = 776

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   + +G V  V +FGAFV     +DGLVHIS L+ + VA   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKYVADPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLTDE 724


>gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
 gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
          Length = 261

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      EV++ G PS R +   RL  R++  V+   A    T+ I  
Sbjct: 59  WITSEYGMLPRATEVRNPREVTK-GRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL DA            +P+   VA +++G+V +G+  +  
Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGELQKIPLKSFVAAVSVGIV-EGNKLL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S  ED    +D  V  TD G I  +Q   + G  S       L  A  G   I+   
Sbjct: 175 -DLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQ 233

Query: 536 SKVLSE 541
            +VLS+
Sbjct: 234 KEVLSD 239


>gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5]
 gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Aquifex Aeolicus
 gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5]
          Length = 255

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y+ LP AT + +       R+G  +  EI   R+  RA+   +  T     T+ 
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGRTH-EIQ--RMIGRAMRTAVELTKIGERTIW 113

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A + G+ +A+ DA +           PI   VA +++G+V D    
Sbjct: 114 VDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            IL D++ +ED    +D  V GT SG
Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195


>gi|320157699|ref|YP_004190078.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio
           vulnificus MO6-24/O]
 gi|319933011|gb|ADV87875.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio
           vulnificus MO6-24/O]
          Length = 774

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I +++D+ EV  I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGIHNVSDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLSDE 724


>gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
          Length = 403

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D  D
Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LS+K  D N 
Sbjct: 345 R-RISLSIKAADSNA 358



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FG F+   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 197 VGDVIEGKVSRLTNFGGFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 256 NDRHRISLSIK 266


>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 491

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+TV+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
 gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           157F]
          Length = 491

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+TV+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|169334402|ref|ZP_02861595.1| hypothetical protein ANASTE_00802 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259119|gb|EDS73085.1| hypothetical protein ANASTE_00802 [Anaerofustis stercorihominis DSM
           17244]
          Length = 714

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFGAFV     +DGLVHISQ+S   +   SD++K GD V V +LD + D+ +
Sbjct: 648 KGTVRNVVDFGAFVDIGVHQDGLVHISQISNTFIKHPSDILKTGDIVEVTVLDVNKDKNR 707

Query: 683 IKLSM 687
           I LSM
Sbjct: 708 ISLSM 712


>gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
 gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
          Length = 261

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      EV++ G PS R +   RL  R++  V+        T+ I  
Sbjct: 59  WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL DA            +P+   VA +++G+V +G++ +  
Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIV-EGNELL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S  ED    +D  V  TD G I  +Q   + G  ++  +   L  A+ G   I+   
Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQ 233

Query: 536 SKVLSE 541
            +VLS+
Sbjct: 234 KEVLSD 239


>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
 gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 491

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+TV+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 491

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+TV+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|27364308|ref|NP_759836.1| transcription accessory protein [Vibrio vulnificus CMCP6]
 gi|27360426|gb|AAO09363.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Vibrio
           vulnificus CMCP6]
          Length = 774

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I +++D+ EV  I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGIHNVSDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLSDE 724


>gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           T125a Mutant From Aquifex Aeolicus
          Length = 255

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y+ LP AT + +       R+G  +  EI   R+  RA+   +  T     T+ 
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGRTH-EIQ--RMIGRAMRTAVELTKIGERTIW 113

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A + G+ +A+ DA +           PI   VA +++G+V D    
Sbjct: 114 VDCDVIQADGGARTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDR--- 170

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            IL D++ +ED    +D  V GT SG
Sbjct: 171 -ILLDLNFEEDSAAQVDMNVVGTGSG 195


>gi|320161941|ref|YP_004175166.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1]
 gi|319995795|dbj|BAJ64566.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG VV++  FGAFV     R GL+HIS+++   V + S+VVKEGD + V+++DF+ + 
Sbjct: 104 VVKGTVVRLEKFGAFVEIGAERPGLLHISEMAHGYVREPSEVVKEGDEIEVEVIDFNRKK 163

Query: 682 K-IKLSMKVV 690
           + IKLS K +
Sbjct: 164 RQIKLSRKAL 173


>gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4]
 gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
          Length = 382

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   I +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|94985677|ref|YP_605041.1| 30S ribosomal protein S1 [Deinococcus geothermalis DSM 11300]
 gi|94555958|gb|ABF45872.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
          Length = 587

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
           ++G+VV++ DFG FV+  G  DGLVH S+L+  R     DVVK GD V V+++D D+ R 
Sbjct: 251 FEGEVVEITDFGVFVNLGGI-DGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRE 309

Query: 682 KIKLSMKVVDQN 693
           +I LSMK + Q+
Sbjct: 310 RINLSMKSLTQD 321



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           KG++  + DFG F+      +GL+HIS+L T+RV   +D+ K+GD +   +L+ D
Sbjct: 424 KGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNID 478



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +G+V  + +FGAFV      +GLVH+S++S T+RV   ++V+KEGD V   +L  D +
Sbjct: 337 RGKVTNLTNFGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPK 394


>gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
          Length = 382

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   I +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
           20098]
 gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
           20098]
          Length = 490

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+TV+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
          Length = 382

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   I +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 [Pediococcus pentosaceus ATCC 25745]
 gi|116102991|gb|ABJ68134.1| SSU ribosomal protein S1P [Pediococcus pentosaceus ATCC 25745]
          Length = 402

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 7/90 (7%)

Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE EA R E++ SI +      +  G+V ++ +FGAFV   G  DGLVHIS++S +RV K
Sbjct: 187 AEREAKRGEVLASIKE----GDVVTGKVARLTNFGAFVDLGGI-DGLVHISEISYQRVDK 241

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            SDV+K G+ V VK+L  D ++ ++ LS+K
Sbjct: 242 PSDVLKAGEEVQVKVLSVDAEKERVSLSIK 271



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G+V ++ DFGAFV      +GLVHISQ+S + +A  +DV+KEG  + VK+L+     
Sbjct: 290 VLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLKEGQDIKVKVLEVHPAE 349

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 350 HRLALSIKALEE 361


>gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 691

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 8/123 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASS-------SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           VE     +NI DD  VKI          SL   +   +     T+  EV  +  G+VV +
Sbjct: 502 VEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNEHEVGDVITGKVVNL 561

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           +DFGAFV      +GL+H+S++S + V K SD +  GD V VK+L  D +  KI LS+K 
Sbjct: 562 LDFGAFVEVSEGVEGLIHVSEISWDHVEKPSDELNVGDEVEVKILSIDPEEEKIGLSIKA 621

Query: 690 VDQ 692
           + +
Sbjct: 622 LKE 624



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D  E  ++  G+V ++ DFGAF+   G+ DGL+H+S ++  RV    DV+  GD + VK+
Sbjct: 461 DELEEGQVITGKVARLTDFGAFIEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKI 519

Query: 675 LDFD-DRGKIKLSMK 688
           L  + ++ +I L  K
Sbjct: 520 LKLNKEKNRISLGRK 534


>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 241

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 22/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I A+VG++ +  GS++F  G+T+ I  V  G RE    + + S  ++
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV-YGPRE----IQNKSQQKK 63

Query: 372 ND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
           ND    +  Y+    +TG+  R     RR      + R+ +   +  T   P++ + I  
Sbjct: 64  NDHAVVLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACI-LTELMPHSQIDIFL 121

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           ++ ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED  G
Sbjct: 122 QVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP----LLDLNYVEDSAG 177

Query: 488 HMDFKVAGTDS--GITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             D  V        +T +QMD K+   + E +  +A +  K     I   + +VL E+  
Sbjct: 178 GADVTVGILPKLDKVTLLQMDAKLPMETFETVFALASEGCK----AIAERIREVLQENTK 233

Query: 545 QL 546
           QL
Sbjct: 234 QL 235


>gi|182418532|ref|ZP_02949820.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum 5521]
 gi|237667880|ref|ZP_04527864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377624|gb|EDT75172.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum 5521]
 gi|237656228|gb|EEP53784.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 634

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 593 VKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +K+ +S  A +E A+ EM     +   +N + KG+V +  DFGAFV   G  DGL+H+SQ
Sbjct: 450 IKVVASRRALLEKAKNEMETKAWESFNLNDVVKGEVKRFTDFGAFVEINGV-DGLLHLSQ 508

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +S   V K  DV+K G  V VK++  D +  K+ LSMK
Sbjct: 509 ISWNHVKKIEDVLKIGQIVDVKIIGLDKETKKLSLSMK 546



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE + I  G+VV++  FGAFV      DGLVHIS++S ER+   + V+  G  +  K+L 
Sbjct: 561 PE-DSIVLGKVVRLSKFGAFVELEPGVDGLVHISKISHERIEDPAQVLTIGQEIKAKILS 619

Query: 677 FDDRGK-IKLSMK 688
            D+  K I LS+K
Sbjct: 620 VDEENKRISLSIK 632


>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213]
 gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213]
          Length = 491

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+TV+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|309389980|gb|ADO77860.1| RNA binding S1 domain protein [Halanaerobium praevalens DSM 2228]
          Length = 121

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G++  + +FGAFV       GLVHIS+++   V   S+ +KEGD V VK+++ 
Sbjct: 4   EVGSIVVGEITGITNFGAFVELESGETGLVHISEVANTYVKDISNFLKEGDDVKVKVINV 63

Query: 678 DDRGKIKLSMK 688
           D+ GKI LS+K
Sbjct: 64  DNDGKIGLSIK 74


>gi|257867659|ref|ZP_05647312.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257873988|ref|ZP_05653641.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257876567|ref|ZP_05656220.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325571138|ref|ZP_08146710.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
 gi|257801742|gb|EEV30645.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257808152|gb|EEV36974.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257810733|gb|EEV39553.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325156223|gb|EGC68409.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
          Length = 404

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E E A++    + D+ E  ++ +G+V ++ DFGAFV   G  DGLVH+S++S 
Sbjct: 182 LSHKAVVEAEKAKQKEALLADLYEGQEV-EGKVARLTDFGAFVDLGGI-DGLVHVSEISH 239

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             V K SDV+  GDTV V++L  D D+ ++ LS+K
Sbjct: 240 GHVGKPSDVLSVGDTVNVRILSVDADKERVSLSIK 274



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I +   V  +  G V ++  FGAFV      +GL+HISQ+S + +A   +V++EGD V 
Sbjct: 283 NIEEQAAVGSVLTGTVKRLTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLQEGDEVQ 342

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+L+ +    +I LS+K +++
Sbjct: 343 VKVLEVNPSEHRIALSIKALEK 364


>gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
 gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
          Length = 382

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   I +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDIVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVNVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|158320593|ref|YP_001513100.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140792|gb|ABW19104.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 378

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ DFGAFV   G  DGLVHIS LS  RV   S+VV  GD V V +LDFD D+GK+
Sbjct: 201 GEVKRITDFGAFVDIGGI-DGLVHISDLSWGRVKHPSEVVTIGDIVKVVVLDFDKDKGKV 259

Query: 684 KLSMK 688
            L +K
Sbjct: 260 SLGLK 264



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +  I +G+VV+++DFGAFV      DGLVHISQ+S + +AK S+
Sbjct: 280 IGSIVEGKVVRLVDFGAFVELEVGLDGLVHISQISEKHIAKPSE 323



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           +I  G+V+ V +   FV+     DG++   ++S +   + S++VKEGD + V +L  DD 
Sbjct: 23  EIVSGKVINVTNNEIFVNVGYKSDGIIPKDEISNDITVQPSELVKEGDEIKVYVLSLDDG 82

Query: 680 RGKIKLSMKVVDQNTG 695
            G + LS K VD   G
Sbjct: 83  DGNVLLSKKRVDLTKG 98


>gi|28210090|ref|NP_781034.1| transcription accessory protein [Clostridium tetani E88]
 gi|28202526|gb|AAO34971.1| transcription accessory protein [Clostridium tetani E88]
          Length = 718

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHIS+LS + V    DVVK GD V V++L+ D+ RG+I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLEVDEKRGRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|229816713|ref|ZP_04446999.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
           13280]
 gi|229807689|gb|EEP43505.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
           13280]
          Length = 810

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  RSI D+ EV    KG V  V+DFGAFV     +DGLVHIS+L+   V   S+VV  G
Sbjct: 724 QAARSIEDL-EVGMELKGTVRNVVDFGAFVDIGVHQDGLVHISKLADRFVKHPSEVVAVG 782

Query: 668 DTVWVKLLDFDD-RGKIKLSM 687
           DTV V +   D  RGKI L+M
Sbjct: 783 DTVTVWITGVDKARGKISLTM 803


>gi|242278186|ref|YP_002990315.1| 30S ribosomal protein S1 [Desulfovibrio salexigens DSM 2638]
 gi|242121080|gb|ACS78776.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 503

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E ARE    + DV + + + +G+V K+M FGAFV      +G+VHIS+LS  R AK  
Sbjct: 185 EQEKAREAF--MQDV-QPDAVMEGKVTKLMPFGAFVELTPGVEGMVHISELSWSRSAKPE 241

Query: 662 DVVKEGDTVWVKLLDFDDRG-----KIKLSMK 688
           DVV+ GD V V++L  + R      KI LS+K
Sbjct: 242 DVVQPGDEVSVRILSMEPRKDGKGLKIGLSLK 273



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G VV+  DFGAFV      +GLVH+S++S T+RV K  D V  G  V V + D D  + +
Sbjct: 295 GTVVRCADFGAFVEIAPGIEGLVHVSEMSYTKRVHKPEDEVSPGQEVAVMVKDIDPVKRR 354

Query: 683 IKLSMK 688
           I LSMK
Sbjct: 355 IGLSMK 360


>gi|170718656|ref|YP_001783852.1| RNA-binding S1 domain-containing protein [Haemophilus somnus 2336]
 gi|168826785|gb|ACA32156.1| RNA binding S1 domain protein [Haemophilus somnus 2336]
          Length = 767

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V  + +VVK GD 
Sbjct: 642 VEEITDL-KAGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVENSHEVVKTGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+L+ D  R +I L+M+ +D+N  K
Sbjct: 701 VKVKVLEVDVARKRIGLTMR-LDENPSK 727


>gi|148643352|ref|YP_001273865.1| transcriptional accessory protein S1 RNA binding family protein
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552369|gb|ABQ87497.1| transcriptional accessory protein, S1 RNA binding family, Tex
           [Methanobrevibacter smithii ATCC 35061]
          Length = 715

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I +G V  ++DFGAFV     +DGLVHISQL+ + V    D+V  
Sbjct: 633 RKNVLSIDDLEE-GMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADKFVKHPLDIVSV 691

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+LD D  R +I+LSM
Sbjct: 692 GDIVDVKVLDVDLARNRIQLSM 713


>gi|37678418|ref|NP_933027.1| transcriptional accessory protein [Vibrio vulnificus YJ016]
 gi|37197157|dbj|BAC92998.1| transcriptional accessory protein [Vibrio vulnificus YJ016]
          Length = 763

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I +++D+ EV  I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGIHNVSDL-EVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 245

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 306 VMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           V+LD+  +R DGR  +  R I  + G L+   GS+    GD + I+V   G R+   +  
Sbjct: 9   VLLDENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNK-ILVGVFGPRD--VHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
            +S T      + Y+  P +  E  +  APSRREI   ++ + A+ P +    +FP T +
Sbjct: 66  HMSNTDTGILRVRYHMEPFSVTE-RKNPAPSRREIEISKVIKEALEPAV-MLEKFPRTAV 123

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+ ++DG +  A +  +S+AL DAG+P+   VA  A G   D     I+ D++ +E
Sbjct: 124 DVFIEVLQADGGTRCAALSAASVALADAGIPMRDMVAACAAGKAAD----TIILDVNNEE 179

Query: 484 DHLGHMDFKVAGTDS--GITAMQMD 506
           D  G  D  +    S   IT +Q+D
Sbjct: 180 DQAGQADMPIGYMPSLEKITLLQLD 204


>gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
 gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
          Length = 382

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSQKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335

Query: 682 K-IKLSMK 688
           K I LS+K
Sbjct: 336 KRISLSIK 343


>gi|157676006|emb|CAP07844.1| putative transcriptional accessory protein [Neisseria weaveri]
          Length = 770

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 8/97 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 641 EGINEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 699

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ------NTGKP 697
           D V VK+L+ D  R +I L+M++ D+       +G+P
Sbjct: 700 DVVKVKVLEVDAARKRIALTMRLDDEAGSGTARSGRP 736


>gi|116333424|ref|YP_794951.1| 30S ribosomal protein S1 [Lactobacillus brevis ATCC 367]
 gi|116098771|gb|ABJ63920.1| SSU ribosomal protein S1P [Lactobacillus brevis ATCC 367]
          Length = 434

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ +FGAFV   G  DGLVH+S+++ ERV K SDV+K G  V VK+L  D DR
Sbjct: 208 VVDGKVARLTNFGAFVDLGGV-DGLVHVSEIAFERVEKPSDVLKVGQDVKVKVLSVDADR 266

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 267 DRISLSIK 274



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683
           G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G  + VK+LD   +  ++
Sbjct: 296 GTVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPADVLKVGQEIKVKVLDVRPEDHRL 355

Query: 684 KLSMKVVDQ 692
            LS+K +++
Sbjct: 356 ALSIKALEE 364


>gi|292669439|ref|ZP_06602865.1| RNA-binding protein [Selenomonas noxia ATCC 43541]
 gi|292648892|gb|EFF66864.1| RNA-binding protein [Selenomonas noxia ATCC 43541]
          Length = 148

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  + +FGAFV     + GL+HIS+++   V    D ++E D V  K+L  
Sbjct: 4   EVGSIVEGVVTGITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLRERDQVKAKVLTI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           DDRGKI LS+K +      P
Sbjct: 64  DDRGKIGLSIKALQAKPAVP 83


>gi|238924000|ref|YP_002937516.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Eubacterium rectale ATCC 33656]
 gi|238875675|gb|ACR75382.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Eubacterium rectale ATCC 33656]
 gi|291524741|emb|CBK90328.1| Ribosomal protein S1 [Eubacterium rectale DSM 17629]
 gi|291528938|emb|CBK94524.1| Ribosomal protein S1 [Eubacterium rectale M104/1]
          Length = 371

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG+V ++ DFGAF+      D L+H+SQ+S + V K SDV+K G  V  K+++F+ D 
Sbjct: 279 IVKGKVARMTDFGAFIELAPGVDALLHVSQISKDHVEKPSDVLKIGQEVEAKVVEFNEDD 338

Query: 681 GKIKLSMKVV 690
            KI LSMK +
Sbjct: 339 KKISLSMKAL 348



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  V DFGAF+   G  DGL+HIS++S  RV     V   G TV V + + +
Sbjct: 193 VGDVIEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFTVGQTVRVFVKNIN 251

Query: 679 DRGKIKLSMKVVDQN 693
              KI LSMK  D+N
Sbjct: 252 G-SKIALSMKFDDEN 265


>gi|308802864|ref|XP_003078745.1| DHX8_ARATH Putative pre-mRNA splicing factor ATP-dep (ISS)
           [Ostreococcus tauri]
 gi|116057198|emb|CAL51625.1| DHX8_ARATH Putative pre-mRNA splicing factor ATP-dep (ISS)
           [Ostreococcus tauri]
          Length = 1090

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVH---FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P V ++ +G+V  V+DFGAFV    F    +GLVH+S ++   +    D    GD V+VK
Sbjct: 173 PSVGEVCRGRVTNVLDFGAFVELVEFKRKFEGLVHVSAIADRHLKSAKDGASRGDRVFVK 232

Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696
           +L  + + K+ LSMK VDQ TGK
Sbjct: 233 VLSRNGQ-KMSLSMKEVDQITGK 254


>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
 gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
          Length = 383

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV   G  DGLVHISQL+  RV   ++VVKEGD V VK+L  D D 
Sbjct: 191 VVEGTVQRLTDFGAFVDVGGV-DGLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDS 249

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 250 ERVSLSIK 257



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +++ FGAFV      +GLVHISQ++   +    +V+ EG+ V  K+LD +   
Sbjct: 276 VIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVNISE 335

Query: 681 GKIKLSMKVVDQNTG 695
            +I LS++ +  + G
Sbjct: 336 KRISLSIRELLDDAG 350



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 607 REMIRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            EM   +T++    V  +  G+V KV D  AFV      DG++ IS+LS+  V K SDV+
Sbjct: 3   EEMNNEVTEMKSFSVGDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSLHVEKVSDVL 62

Query: 665 KEGDTVWVKLLDFDD 679
            EGD + +K+L  +D
Sbjct: 63  SEGDELELKVLKVED 77


>gi|222445594|ref|ZP_03608109.1| hypothetical protein METSMIALI_01234 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435159|gb|EEE42324.1| hypothetical protein METSMIALI_01234 [Methanobrevibacter smithii
           DSM 2375]
          Length = 715

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I +G V  ++DFGAFV     +DGLVHISQL+   V    D+V  
Sbjct: 633 RKNVLSIEDLEE-GMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADRFVKHPLDIVSV 691

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+LD D  R +I+LSM
Sbjct: 692 GDIVDVKVLDVDLARNRIQLSM 713


>gi|325267676|ref|ZP_08134327.1| YhgF like protein [Kingella denitrificans ATCC 33394]
 gi|324980800|gb|EGC16461.1| YhgF like protein [Kingella denitrificans ATCC 33394]
          Length = 758

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713


>gi|225025370|ref|ZP_03714562.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC
           23834]
 gi|224941814|gb|EEG23023.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC
           23834]
          Length = 758

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713


>gi|20808801|ref|NP_623972.1| hypothetical protein TTE2443 [Thermoanaerobacter tengcongensis MB4]
 gi|20517450|gb|AAM25576.1| Ribosomal protein S1 domains [Thermoanaerobacter tengcongensis MB4]
          Length = 137

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V+ + DFGAF+     + GLVHIS+++   V    D +KE D V VK+L  
Sbjct: 4   EVGDIVEGTVLNITDFGAFIKLPEGKTGLVHISEVANTYVKNIRDFLKENDRVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EPNGKISLSIK 74


>gi|301299466|ref|ZP_07205741.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852929|gb|EFK80538.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 397

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++A RE  R ++ +      + +G+V ++ +FGAF++  G  DGLVH+S++S ERV K +
Sbjct: 181 VQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFINL-GGFDGLVHVSEISYERVNKPA 239

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           D +K G  V VK+L  D ++G+I LS+K
Sbjct: 240 DALKVGQEVKVKVLSVDAEKGRISLSIK 267



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G+ V VK+L  D   
Sbjct: 286 VLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAAD 345

Query: 682 -KIKLSMKVVDQNTGKPIV 699
            ++ LS+K + +   KP V
Sbjct: 346 HRLALSIKALQE---KPAV 361


>gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 383

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I D  +   I +G+VV+++DFGAFV      DGLVHISQ+S   +AK S+ +  G  V V
Sbjct: 274 IADKFKAGDILEGKVVRLVDFGAFVELMPGLDGLVHISQISEAHIAKPSEELHVGQNVNV 333

Query: 673 KLLDFDDRGK-IKLSMKVVDQNT 694
           K+LD +  GK I LSM    +++
Sbjct: 334 KVLDINIDGKRISLSMTAAQEDS 356



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G+V ++ +FGAFV   G  DGLVHIS+LS  RV   S+VV   D V VK++DFD+  GK
Sbjct: 200 RGEVKRLTNFGAFVDIGGI-DGLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGK 258

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 259 VSLSIK 264


>gi|219870727|ref|YP_002475102.1| transcriptional accessory protein (S1 RNA binding domain)
           [Haemophilus parasuis SH0165]
 gi|219690931|gb|ACL32154.1| transcriptional accessory protein (S1 RNA binding domain)
           [Haemophilus parasuis SH0165]
          Length = 769

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 644 VEEISDL-KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISMLSNSFVEDPHQVVKTGDV 702

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+L+ D  R +I L+M++ D+ T K
Sbjct: 703 VKVKVLEVDVARKRIALTMRLDDKPTDK 730


>gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 4 [Canis familiaris]
          Length = 244

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 112/239 (46%), Gaps = 14/239 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E  + V +
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-ARGVRT 63

Query: 366 LSGTQRNDFM-MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           L  TQR   +   Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 64  L--TQRKALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 122 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLSHVEE 177

Query: 485 HLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
             G   +   +      I  ++MD +   + E+ +   L+ A R    +   + +V+ +
Sbjct: 178 AAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 233


>gi|258574049|ref|XP_002541206.1| ATP-dependent RNA helicase DHX8 [Uncinocarpus reesii 1704]
 gi|237901472|gb|EEP75873.1| ATP-dependent RNA helicase DHX8 [Uncinocarpus reesii 1704]
          Length = 1223

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P + KIY G+V  + +FGAFV+  G R   DGLVH+S +    RV   SD+V  G  V V
Sbjct: 253 PILYKIYDGRVTGIKEFGAFVNLQGVRGKVDGLVHVSSMQDGARVNHPSDLVSRGQPVKV 312

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++      +I LSMK VDQ TG+ +V
Sbjct: 313 KIVSIQG-TRIGLSMKEVDQVTGRDLV 338


>gi|224010385|ref|XP_002294150.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970167|gb|EED88505.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 303

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 17/97 (17%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           PE+  I++G V ++  +G FV        GLVHISQL   +V   +DVV   D VWVK++
Sbjct: 34  PELYSIHRGSVSRIEPYGCFVKLHTTPLSGLVHISQLHNTKVENVNDVVSLEDEVWVKVM 93

Query: 676 DFD----------------DRGKIKLSMKVVDQNTGK 696
           D                   R K+KLSMK V+Q+ G+
Sbjct: 94  DVQVEQIEGSGEDGGGFTRQRHKVKLSMKYVNQDNGE 130


>gi|229160548|ref|ZP_04288543.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
 gi|228622958|gb|EEK79789.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
          Length = 382

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 62/97 (63%), Gaps = 3/97 (3%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+
Sbjct: 163 VILSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQI 220

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 221 SHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVTVKVLEVHVAE 335

Query: 681 GKIKLSMK-VVDQNT 694
            +I LS+K  +D+N 
Sbjct: 336 KRISLSIKEALDENN 350


>gi|157676004|emb|CAP07843.1| putative transcriptional accessory protein [Neisseria canis]
          Length = 762

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V    +VVK G
Sbjct: 633 EGINEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQDPREVVKAG 691

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ------NTGKP 697
           D V VK+L+ D  R +I L+M++ D+       +G+P
Sbjct: 692 DVVKVKVLEVDAARKRIALTMRLDDEAGSGSTRSGRP 728


>gi|70997647|ref|XP_753563.1| RNA helicase-like splicing factor (HRH1) [Aspergillus fumigatus
           Af293]
 gi|66851199|gb|EAL91525.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           fumigatus Af293]
 gi|159126706|gb|EDP51822.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           fumigatus A1163]
          Length = 1230

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P + KIY G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD+V  G  V V
Sbjct: 259 PILYKIYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQPVKV 318

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++      +I LSMK VDQ TG  +V
Sbjct: 319 KVISIQG-SRIGLSMKEVDQVTGLDLV 344


>gi|324325614|gb|ADY20874.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|294669724|ref|ZP_06734790.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308290|gb|EFE49533.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 758

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713


>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
 gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
          Length = 402

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G +V VK+L+ D  D
Sbjct: 285 IFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSD 344

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LS+K  D N 
Sbjct: 345 R-RISLSIKAADSNA 358



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FGAF+   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 197 VGDVVEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 255

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 256 NDRHRISLSIK 266


>gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264]
 gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264]
 gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|52143850|ref|YP_082978.1| 30S ribosomal protein S1 [Bacillus cereus E33L]
 gi|51977319|gb|AAU18869.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
           E33L]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
          Length = 243

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 20/241 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGT 369
           +R+DGR    +R + AQ+G++ +  GS++F  G+T+ I  V  G  E +     L     
Sbjct: 9   LRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAV-YGPHEVQNKNQQLPDQAL 67

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
            R ++ M  NF   +TG+  R     RR      + R+ +   +  T   P T + I  +
Sbjct: 68  VRCEYSMA-NF---STGDRPRRSKGDRRATEISLVIRQTMEATI-LTHLMPRTQIDIFVQ 122

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A +  ++LAL DAG+P+   V   A G +        L D++  ED  G 
Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMCDLVTSCAAGYLNSTP----LLDMNYMEDSAGG 178

Query: 489 MDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            D  V        ++ +QMD K+   I E +M +A++  K     I+  +  VL E+  Q
Sbjct: 179 PDVAVGLMTKMDKLSLLQMDSKLPMDIFETVMQLAIEGCK----AIVRYIQDVLLENTKQ 234

Query: 546 L 546
           L
Sbjct: 235 L 235


>gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVQVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|222095228|ref|YP_002529288.1| 30S ribosomal protein s1 [Bacillus cereus Q1]
 gi|221239286|gb|ACM11996.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
           Q1]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|312144296|ref|YP_003995742.1| RNA binding S1 domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904947|gb|ADQ15388.1| RNA binding S1 domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 121

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V  + +FGAFV       GLVHIS+++   V   S+ +KE D V VK+++ 
Sbjct: 4   EVGSIVDGKVTGITNFGAFVELESGETGLVHISEVANTYVKDISNFLKEDDDVKVKVINI 63

Query: 678 DDRGKIKLSMK 688
           DD GKI LS+K
Sbjct: 64  DDDGKIGLSIK 74


>gi|317054824|ref|YP_004103291.1| RNA-binding S1 domain-containing protein [Ruminococcus albus 7]
 gi|315447093|gb|ADU20657.1| RNA binding S1 domain protein [Ruminococcus albus 7]
          Length = 172

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KIY+G+V  +  FGAFV       G+VHIS+++   V++  D ++EG TV VK+L  
Sbjct: 4   EVGKIYEGKVTGITKFGAFVELDKDTTGMVHISEVANTFVSEIKDHLQEGQTVKVKVLSM 63

Query: 678 DDRGKIKLSMK 688
            + GKI LS+K
Sbjct: 64  GEDGKISLSIK 74


>gi|229189679|ref|ZP_04316693.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
 gi|228593728|gb|EEK51533.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
 gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|167855135|ref|ZP_02477907.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755]
 gi|167853770|gb|EDS25012.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755]
          Length = 769

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 644 VEEISDL-KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISMLSNSFVEDPHQVVKTGDV 702

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+L+ D  R +I L+M++ D+ T K
Sbjct: 703 VKVKVLEVDVARKRIALTMRLDDKPTDK 730


>gi|154294501|ref|XP_001547691.1| hypothetical protein BC1G_13853 [Botryotinia fuckeliana B05.10]
 gi|150844693|gb|EDN19886.1| hypothetical protein BC1G_13853 [Botryotinia fuckeliana B05.10]
          Length = 1220

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWVKL 674
           + KIY G V  V DFGAFV+  G +   DGLVH+S L   +RV   SD+V     V VK+
Sbjct: 251 LQKIYDGHVTSVKDFGAFVNIHGVKGKVDGLVHVSALVEGQRVNHPSDLVSRNQPVKVKV 310

Query: 675 LDFDDRGKIKLSMKVVDQNTG 695
           +  +   +I LSMK VDQ TG
Sbjct: 311 IKVEG-NRIGLSMKEVDQETG 330


>gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 393

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335

Query: 682 K-IKLSMK 688
           K I LS+K
Sbjct: 336 KRISLSIK 343


>gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
 gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|206974887|ref|ZP_03235802.1| ribosomal protein S1 [Bacillus cereus H3081.97]
 gi|229195798|ref|ZP_04322558.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
 gi|206746906|gb|EDZ58298.1| ribosomal protein S1 [Bacillus cereus H3081.97]
 gi|228587695|gb|EEK45753.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|300117474|ref|ZP_07055264.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
 gi|298725309|gb|EFI65961.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|218896527|ref|YP_002444938.1| ribosomal protein S1 [Bacillus cereus G9842]
 gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842]
 gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335

Query: 682 K-IKLSMK 688
           K I LS+K
Sbjct: 336 KRISLSIK 343


>gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012]
 gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam]
 gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis Tsiankovskii-I]
 gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218902709|ref|YP_002450543.1| ribosomal protein S1 [Bacillus cereus AH820]
 gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227815655|ref|YP_002815664.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|229604611|ref|YP_002866001.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066]
 gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B]
 gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum]
 gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94]
 gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus anthracis CI]
 gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam]
 gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis Tsiankovskii-I]
 gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820]
 gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
          Length = 249

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 8/181 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R+I+ ++G+  +  GS+   +G+T+ +  V  G  E  Q   
Sbjct: 2   NIISEHGFRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAV-YGPHEPRQR-- 58

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
           + +   R      Y+    +T E        RR +   RL  +A    +     +P+  +
Sbjct: 59  NRTQEDRCTVNCQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAI-LVENYPHAQI 117

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ ++DGS   A V  ++LAL DAGVP+   VA  +     DG      +D+S  E
Sbjct: 118 DIFCELLQADGSHLAACVNAATLALADAGVPMRGLVAAASCACALDGTP---CADVSARE 174

Query: 484 D 484
           +
Sbjct: 175 E 175


>gi|295109915|emb|CBL23868.1| Ribosomal protein S1 [Ruminococcus obeum A2-162]
          Length = 358

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+
Sbjct: 276 VGNVVTGKVARMTDFGAFVELAPGIDALLHVSQISREHVAKPSDVLSIGQEIQAKVVDFN 335

Query: 679 -DRGKIKLSMK 688
            +  KI LSMK
Sbjct: 336 GEDKKISLSMK 346


>gi|321257277|ref|XP_003193532.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317460002|gb|ADV21745.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1188

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG----------ARDGLVHISQLS 653
           +++R    ++ + P + KIY G +  + DFGAFV   G          + +GLVH+S ++
Sbjct: 207 DSSRHGRPTLDERPVLYKIYNGTIANITDFGAFVTLDGVERRVNGNQRSNEGLVHVSNIT 266

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             RV    D +K G  V VK++      KI LSMK VDQ+TG
Sbjct: 267 NGRVNSARDFLKRGQRVKVKVMTVSP--KIGLSMKDVDQDTG 306


>gi|217959075|ref|YP_002337623.1| 30S ribosomal protein S1 [Bacillus cereus AH187]
 gi|229138291|ref|ZP_04266886.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
 gi|217064831|gb|ACJ79081.1| ribosomal protein S1 [Bacillus cereus AH187]
 gi|228645183|gb|EEL01420.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|3122814|sp|O06000|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog
 gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVN-VGGVDGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|315652689|ref|ZP_07905664.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485067|gb|EFU75474.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 232

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E A++  ++  D  +V  + +G+V  + D+GAF+       GL+H+SQ+S +RV   +
Sbjct: 110 EKEEAKKERQAKFDSVKVGDVLEGKVDSIKDYGAFIDLGDGISGLLHVSQISNQRVKNPA 169

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            V+KEG++V VK+    D GKI LS K +++N 
Sbjct: 170 AVLKEGESVKVKVTGIKD-GKISLSKKALEENA 201


>gi|302671391|ref|YP_003831351.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316]
 gi|302395864|gb|ADL34769.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316]
          Length = 379

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG+V ++ DFGAFV      D L+H+SQ++ E V K +DV+K G  V  K++DF+
Sbjct: 276 VGNVVKGKVARMTDFGAFVELEPGIDALLHVSQIAKEHVEKPADVLKVGQEVEAKIVDFN 335

Query: 679 -DRGKIKLSMK 688
            D  KI LS+K
Sbjct: 336 EDEKKISLSIK 346



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  + EAA+++  +I    +   +  G V  V DFGAF+   GA DGL+HIS++S  RV 
Sbjct: 177 SAEKAEAAKKLFDTI----KAGDVVDGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVE 231

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
               V K GDTV V L+   D  KI LS K  D+N  K
Sbjct: 232 SPKKVFKIGDTVKV-LVKSIDGSKIALSRKFDDENPWK 268


>gi|254723673|ref|ZP_05185459.1| 30S ribosomal protein S1 [Bacillus anthracis str. A1055]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILLGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
 gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   S+V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPSEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|229172235|ref|ZP_04299799.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
 gi|228611223|gb|EEK68481.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|30019646|ref|NP_831277.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 14579]
 gi|229126911|ref|ZP_04255922.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
 gi|296502167|ref|YP_003663867.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
 gi|29895190|gb|AAP08478.1| SSU ribosomal protein S1P [Bacillus cereus ATCC 14579]
 gi|228656511|gb|EEL12338.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
 gi|296323219|gb|ADH06147.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|330719102|ref|ZP_08313702.1| SSU ribosomal protein S1P [Leuconostoc fallax KCTC 3537]
          Length = 395

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G V ++ DFGAF+   G  DGLVH+S++S +RV   +DV+  G+ V VK+L  D
Sbjct: 196 VGEVVEGTVARLADFGAFIDLGGV-DGLVHVSEISYDRVKNPADVLSRGEKVNVKILALD 254

Query: 679 -DRGKIKLSMK 688
            ++G+I LS+K
Sbjct: 255 EEKGRISLSIK 265



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +V DFGAFV      +GL+H+SQ+S +RV   +DV+K GD V V++LD     
Sbjct: 284 VLEGTVKRVKDFGAFVEIFPGIEGLIHVSQISHKRVENPADVLKSGDKVKVQVLDVKPAE 343

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK +++
Sbjct: 344 ERISLSMKALEE 355


>gi|325131120|gb|EGC53841.1| S1 RNA binding domain protein [Neisseria meningitidis OX99.30304]
 gi|325137143|gb|EGC59738.1| S1 RNA binding domain protein [Neisseria meningitidis M0579]
          Length = 757

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|218283960|ref|ZP_03489821.1| hypothetical protein EUBIFOR_02417 [Eubacterium biforme DSM 3989]
 gi|218215477|gb|EEC89015.1| hypothetical protein EUBIFOR_02417 [Eubacterium biforme DSM 3989]
          Length = 715

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           +N   +G V  V+DFGAFV      DGLVH+S++ST+RV   SDVV  GD  TVWV  +D
Sbjct: 642 INDKLEGTVRNVVDFGAFVDIGLHEDGLVHVSKMSTKRVKHPSDVVSVGDIVTVWVYNID 701

Query: 677 FDDRGKIKLSM 687
             ++ K++L+M
Sbjct: 702 -QEKQKVQLTM 711


>gi|330812957|ref|XP_003291382.1| hypothetical protein DICPUDRAFT_82061 [Dictyostelium purpureum]
 gi|325078442|gb|EGC32093.1| hypothetical protein DICPUDRAFT_82061 [Dictyostelium purpureum]
          Length = 779

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 6/85 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVA--KTSDVVKEGDTVW 671
           P + KIY G+V  + D+G FV      G RDGLVHISQ+ + RV     SD VK   +V 
Sbjct: 181 PVLYKIYNGKVSTINDYGCFVSLEGIQGRRDGLVHISQIQSGRVKLNHPSDAVKRNQSVK 240

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696
           VK+L      KI LSM+ VDQ +G+
Sbjct: 241 VKVLSVAG-SKISLSMRDVDQESGR 264


>gi|304440262|ref|ZP_07400152.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371311|gb|EFM24927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 671

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G VV ++DFGAFV      DGL+H+SQ+S + + K +D++  GD V VK+ D 
Sbjct: 547 EVGDTVTGHVVNLLDFGAFVRLESGVDGLLHVSQISRDHIEKPADILNIGDEVTVKVTDI 606

Query: 678 DDRG-KIKLSMKVV 690
           D+   KI LS+K +
Sbjct: 607 DEENKKISLSIKAL 620



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 5/77 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV   G  DGL+HIS++S  R+   S+VV  G+ V V++L+ D ++
Sbjct: 466 VIEGTVQRLTDFGAFVD-VGGVDGLIHISEMSWNRIKHPSEVVAPGENVEVQILNLDEEK 524

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L +K   Q T +P
Sbjct: 525 NRIALGLK---QTTKRP 538



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITD-VPEVNK--IYKGQVVKVMDFGAFVHFCGARDGL 646
           D  +K A SS+   +   EM+ +I +    V +  I +G+V+ V D    V+     DG+
Sbjct: 258 DSVIKEAVSSMENFDN-NEMMEAIENSFKRVRRGEIVEGEVLYVTDNEIMVNIGYRSDGI 316

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           V   +LS+    K SD+ K GDT+ V ++  DD  G + LS K V+
Sbjct: 317 VSREELSSNPDVKPSDLFKPGDTIQVYVIKIDDGDGNVVLSHKRVE 362


>gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 385

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV   GA DGLVHIS+LS   V   S+VV+EGD V V++L  D + 
Sbjct: 192 VIEGTVQRLTDFGAFVDVGGA-DGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEA 250

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 251 GRISLSIK 258



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DFGAFV      +GLVH+SQ+S E V K SDV++ G  V V++L  D +R +I LSM+
Sbjct: 287 DFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMR 344


>gi|157676002|emb|CAP07842.1| putative transcriptional accessory protein [Neisseria cinerea]
          Length = 773

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 645 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 703

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 704 DVVKVKVLEVDAARKRIALTMRLDDE 729


>gi|315178828|gb|ADT85742.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218]
          Length = 526

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ++D+ E+  + +G V  V +FGAFV     +DGLVHIS L+   V+   DVVK G
Sbjct: 397 EGVNEVSDL-EIGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPRDVVKAG 455

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 456 DIVKVKVMEVDVQRKRIALSMRLNDE 481


>gi|261349855|ref|ZP_05975272.1| protein YhgF [Methanobrevibacter smithii DSM 2374]
 gi|288860638|gb|EFC92936.1| protein YhgF [Methanobrevibacter smithii DSM 2374]
          Length = 715

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I +G V  ++DFGAFV     +DGL+HISQL+ + V    D+V  
Sbjct: 633 RKNVLSIDDLEE-GMIMQGTVRNIVDFGAFVDIGVHQDGLIHISQLADKFVKHPLDIVSV 691

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+LD D  R +I+LSM
Sbjct: 692 GDIVDVKVLDVDLARNRIQLSM 713


>gi|47565960|ref|ZP_00236998.1| ribosomal protein S1 [Bacillus cereus G9241]
 gi|47556877|gb|EAL15207.1| ribosomal protein S1 [Bacillus cereus G9241]
          Length = 382

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|308388296|gb|ADO30616.1| putative transcriptional accessory protein [Neisseria meningitidis
           alpha710]
          Length = 757

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 385

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV   GA DGLVHIS+LS   V   S+VV+EGD V V++L  D + 
Sbjct: 192 VIEGTVQRLTDFGAFVDVGGA-DGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEA 250

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 251 GRISLSIK 258



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DFGAFV      +GLVH+SQ+S E V K SDV++ G  V V++L  D +R +I LSM+
Sbjct: 287 DFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMR 344


>gi|145300942|ref|YP_001143783.1| hypothetical protein ASA_4094 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853714|gb|ABO92035.1| Protein yhgF [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 768

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 16/162 (9%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIV------EQTGAKVNIDDDGTV-KIASSS 599
           E  P VE I+A    Q+ +++G  G ++R +       EQ G     D  G + K     
Sbjct: 569 ESYPVVERILAQLQQQVESLLG-NGSLLRSLKPADYTDEQFGVPTVTDIIGELDKPGRDP 627

Query: 600 LAEIEAA--REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             E + A  ++ +  I+D+ PE+  I +G V  V +FGAFV     +DGLVHIS L+   
Sbjct: 628 RPEFKTATFKDGVEKISDLAPEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRF 685

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V    +VVK GD V VK+L+ D  R +I L+M+ +D+  G+P
Sbjct: 686 VKDPREVVKAGDIVRVKVLEVDAPRKRISLTMR-LDEKAGQP 726


>gi|260770787|ref|ZP_05879716.1| transcription accessory protein [Vibrio furnissii CIP 102972]
 gi|260614024|gb|EEX39214.1| transcription accessory protein [Vibrio furnissii CIP 102972]
          Length = 769

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ++D+ E+  + +G V  V +FGAFV     +DGLVHIS L+   V+   DVVK G
Sbjct: 640 EGVNEVSDL-EIGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPRDVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|156082920|ref|XP_001608944.1| RNA helicase [Babesia bovis T2Bo]
 gi|154796194|gb|EDO05376.1| RNA helicase, putative [Babesia bovis]
          Length = 1156

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 6/83 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF---CGARDGLVHISQL--STERVAKTSDVVKEGDTVWVKLLD 676
           I+KG+V KV++FG FV F    G   GLVH+S++     R+++ S+ +KE   V+VK + 
Sbjct: 215 IFKGRVTKVVEFGGFVRFKSKNGIHSGLVHVSEILPGNRRLSEASEALKEDMVVYVKKIG 274

Query: 677 FDDRGKIKLSMKVVDQNTGKPIV 699
             +  KI LSMK VDQ TG+ + 
Sbjct: 275 MKN-DKISLSMKSVDQKTGRDLC 296


>gi|154497962|ref|ZP_02036340.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC
           29799]
 gi|150272952|gb|EDN00109.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC
           29799]
          Length = 649

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +VVK+M FGAF       DGL+HISQ++  R+ K  DV+ EG  V VK+ D D DR K+ 
Sbjct: 569 KVVKLMTFGAFAEIVPGVDGLIHISQIADHRIEKPGDVLSEGQMVDVKITDIDMDRKKVS 628

Query: 685 LSMKVV 690
           LS++ +
Sbjct: 629 LSIRAL 634



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  K Y G V  +  +GAFV   G  DG+VHIS+LS  R+   S+VVK GDTV V ++ F
Sbjct: 476 EEGKKYTGTVKSLTSYGAFVDI-GGVDGMVHISELSWSRIKHPSEVVKVGDTVEVYVISF 534

Query: 678 D-DRGKIKLSMK 688
           D ++ KI L MK
Sbjct: 535 DKEKKKISLGMK 546


>gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
 gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
 gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
          Length = 397

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++A RE  R ++ +      + +G+V ++ +FGAF+   G  DGLVH+S++S ERV K +
Sbjct: 181 VQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGV-DGLVHVSEISYERVNKPA 239

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           D +K G  V VK+L  D ++G+I LS+K
Sbjct: 240 DALKVGQEVKVKVLSVDAEKGRISLSIK 267



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G+ V VK+L  D   
Sbjct: 286 VLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAAD 345

Query: 682 -KIKLSMKVVDQNTGKPIV 699
            ++ LS+K + +   KP V
Sbjct: 346 HRLALSIKALQE---KPAV 361


>gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991139|gb|EEC57145.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC
           43243]
          Length = 365

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 614 TDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           TD PE   V  + KG+V ++ DFGAFV      D L+H+SQ++ E V K SDV+K G  +
Sbjct: 268 TDAPEKYAVGNVVKGKVARMTDFGAFVELETGVDALLHVSQIALEHVDKPSDVLKIGQEI 327

Query: 671 WVKLLDFD-DRGKIKLSMKVV 690
             K++D + +  KI LS+K +
Sbjct: 328 EAKVVDLNVEEKKISLSIKAL 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A +++ SI +   +    +G V  V DFGAF+   G  DGL+HIS++S  R      V
Sbjct: 182 EQAEKLLASIKEGDTI----EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRTENPKKV 236

Query: 664 VKEGDTV--WVKLLDFDDRGKIKLSMKVVDQN 693
            K GD+V  +VK +   +  KI LS+K  DQN
Sbjct: 237 FKVGDSVKAFVKEI---NGSKIALSLKYPDQN 265


>gi|320537739|ref|ZP_08037664.1| ribosomal protein S1 [Treponema phagedenis F0421]
 gi|320145418|gb|EFW37109.1| ribosomal protein S1 [Treponema phagedenis F0421]
          Length = 803

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           +VN I KG+V K+ DFGAF+      +GL HIS+ S  +++ K SD+VK GD V   +L 
Sbjct: 517 QVNDIVKGRVTKITDFGAFIELSEGIEGLAHISEFSWVKKINKPSDMVKSGDEVECMILG 576

Query: 677 FD-DRGKIKLSMKVVDQN 693
           +D   G++ L +K V  N
Sbjct: 577 YDIQAGRVSLGLKQVTAN 594



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-EAAR 607
           F P  +  +   D   +++G+ GK    I   +  + N ++D  V      L E+ E  R
Sbjct: 367 FLPISQADSQKVDNPESLVGVSGKFY--IERISPNRQNRENDNIVVNRRKYLEEVTEKTR 424

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     T++ +V    +G+V     FGAF+   G  DGL+H++ +S   V +  D VK+G
Sbjct: 425 DEFFQNTNIGDV---VEGRVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVMRPKDFVKKG 480

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           + + + ++  D    +I LS+K
Sbjct: 481 EKIKLMVIRLDMAEKRINLSLK 502


>gi|312898237|ref|ZP_07757628.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
 gi|310620734|gb|EFQ04303.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
          Length = 149

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  +  FGAFV     + GLVHIS+++ E V    D +K GD   VK+L+ 
Sbjct: 4   EAGNVLEGIVTGITAFGAFVELPDKKVGLVHISEVANEYVKNVHDFLKVGDKTTVKVLNV 63

Query: 678 DDRGKIKLSMK 688
           DDRGKI LS+K
Sbjct: 64  DDRGKIGLSIK 74


>gi|309378562|emb|CBX22834.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 757

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|256005189|ref|ZP_05430157.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|255990843|gb|EEU00957.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|316941592|gb|ADU75626.1| Tex-like protein [Clostridium thermocellum DSM 1313]
          Length = 718

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVHIS+LS + V    DVV  GD V V++LD D +R
Sbjct: 648 ILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRILDVDVER 707

Query: 681 GKIKLSMKVVD 691
            +I +SMK V+
Sbjct: 708 KRISMSMKGVN 718


>gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134]
 gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134]
          Length = 382

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 165 LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 222

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 223 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 257



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAE 335

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 336 KRISLSIK 343


>gi|167758828|ref|ZP_02430955.1| hypothetical protein CLOSCI_01171 [Clostridium scindens ATCC 35704]
 gi|167663568|gb|EDS07698.1| hypothetical protein CLOSCI_01171 [Clostridium scindens ATCC 35704]
          Length = 227

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  + ++GAFV       GLVHISQ+S +RV    DV+ EG  V VK++  
Sbjct: 124 KVGSVLTGKVESLQNYGAFVRLEDGLSGLVHISQISQKRVKSPKDVLTEGQEVGVKIIGV 183

Query: 678 DDRGKIKLSMKVVDQNTGKPI 698
            D GKI LSMK +++   +P+
Sbjct: 184 KD-GKISLSMKALEEVQEEPV 203


>gi|325201262|gb|ADY96716.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240149]
 gi|325207121|gb|ADZ02573.1| S1 RNA binding domain protein [Neisseria meningitidis NZ-05/33]
          Length = 757

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|258591883|emb|CBE68186.1| Putative transcriptional accessory protein containing S1
           RNA-binding domain [NC10 bacterium 'Dutch sediment']
          Length = 774

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 21/164 (12%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+A     IR VIG  G  +R +  +       DD   +      L E+E  
Sbjct: 577 EAYPVVERILADIKKSIREVIG-DGNAVRALTPEK----YTDDKFGLPTVQDILTELEKP 631

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                        RE + S+ D+ E   + +G V  V +FGAFV     +DGLVH+S L+
Sbjct: 632 GRDPRPEFKTALFREGVESLMDL-ESGMMLEGIVTNVTNFGAFVDIGVHQDGLVHVSALA 690

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            + V     +VK GD V VK+L+ D  R +I L+M++ D+ T +
Sbjct: 691 DKFVKDPHSIVKAGDVVKVKVLEVDIARKRIALTMRLSDEVTAR 734


>gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118]
 gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118]
          Length = 399

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++A RE  R ++ +      + +G+V ++ +FGAF+   G  DGLVH+S++S ERV K +
Sbjct: 183 VQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGV-DGLVHVSEISYERVNKPA 241

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           D +K G  V VK+L  D ++G+I LS+K
Sbjct: 242 DALKVGQEVKVKVLSVDAEKGRISLSIK 269



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G+ V VK+L  D   
Sbjct: 288 VLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAAD 347

Query: 682 -KIKLSMKVVDQNTGKPIV 699
            ++ LS+K + +   KP V
Sbjct: 348 HRLALSIKALQE---KPAV 363


>gi|307822523|ref|ZP_07652754.1| Tex-like protein [Methylobacter tundripaludum SV96]
 gi|307736127|gb|EFO06973.1| Tex-like protein [Methylobacter tundripaludum SV96]
          Length = 760

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  ITD+ EV     G V  V +FGAFV     +DGLVHIS LS   V    D VK GD 
Sbjct: 639 IEKITDL-EVGMRLDGVVTNVANFGAFVDIGVHQDGLVHISHLSDTFVKDPRDAVKTGDM 697

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V VK+L+ D +R +I LSMK 
Sbjct: 698 VKVKVLEVDVERKRISLSMKT 718


>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
          Length = 271

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 21/252 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 32  LLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 88

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               S +   R      Y+    +TGE  R     R+    G   R+     +       
Sbjct: 89  ----SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 144

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S
Sbjct: 145 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 200

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM--S 536
             E+  G   +   +      I  ++MD ++       ++ A  QA RG +H L ++   
Sbjct: 201 HVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARG-VHTLLDLVVR 259

Query: 537 KVLSESRLQLGE 548
           + + E+ + LG+
Sbjct: 260 QHVQEASVSLGD 271


>gi|139439282|ref|ZP_01772724.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
           25986]
 gi|133775306|gb|EBA39126.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
           25986]
          Length = 442

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           KG V  V+DFGAFV     +DGLVHIS+L+   V   SDVV+ GDT  VWV+ +D  DR 
Sbjct: 374 KGTVRNVVDFGAFVDVGVHQDGLVHISKLANRFVKHPSDVVRVGDTVKVWVEKVD-RDRK 432

Query: 682 KIKLSM 687
           KI L+M
Sbjct: 433 KISLTM 438


>gi|125974456|ref|YP_001038366.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|281418982|ref|ZP_06250000.1| Tex-like protein-like protein [Clostridium thermocellum JW20]
 gi|125714681|gb|ABN53173.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|281407439|gb|EFB37699.1| Tex-like protein-like protein [Clostridium thermocellum JW20]
          Length = 718

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVHIS+LS + V    DVV  GD V V++LD D +R
Sbjct: 648 ILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRILDVDVER 707

Query: 681 GKIKLSMKVVD 691
            +I +SMK V+
Sbjct: 708 KRISMSMKGVN 718


>gi|310819429|ref|YP_003951787.1| s1 RNA binding domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392501|gb|ADO69960.1| S1 RNA binding domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 778

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A RE ++++ DV E   + +G V  V  FGAFV     +DGLVH+SQLST  V   S+V 
Sbjct: 629 ALREDLKTLEDVKE-GMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQLSTRVVKDPSEVA 687

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           K GD + VK+L  D  R ++ LS++ V +
Sbjct: 688 KVGDRLTVKVLSVDLARKRLALSVRAVQE 716


>gi|239606255|gb|EEQ83242.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ER-3]
 gi|327355965|gb|EGE84822.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 1225

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD+V +G 
Sbjct: 249 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 308

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V VK+       +I LSMK VDQ TG+
Sbjct: 309 PVKVKVNTIQG-ARIGLSMKEVDQVTGR 335


>gi|299821632|ref|ZP_07053520.1| 30S ribosomal protein S1 [Listeria grayi DSM 20601]
 gi|299817297|gb|EFI84533.1| 30S ribosomal protein S1 [Listeria grayi DSM 20601]
          Length = 382

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 6/89 (6%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A++E  +E++  I +    N +  G+V ++ DFGAFV   G  DGLVH+SQ+S   + K 
Sbjct: 173 AKLEQKKEVLEKIHE----NDVLTGKVARLADFGAFVDLGGV-DGLVHVSQISYSHIDKP 227

Query: 661 SDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           S+V++EG  V VK+L  D    +I LS+K
Sbjct: 228 SEVLEEGQEVKVKVLSVDKANERISLSIK 256



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+VV+++ FGAFV      +GLVHISQ++ + +    +V+KEG  V VK+LD + D 
Sbjct: 275 VLSGKVVRLVSFGAFVEVAPGVEGLVHISQIAHKHIGTPQEVLKEGQEVEVKVLDVNLDE 334

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K + ++
Sbjct: 335 KRLSLSIKALQED 347


>gi|121713496|ref|XP_001274359.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           clavatus NRRL 1]
 gi|119402512|gb|EAW12933.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           clavatus NRRL 1]
          Length = 1231

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHIS-QLSTERVAKTSDVVKEGD 668
           + D P + KIY G V  V DFGAFV+  G +   DGLVH+S  L   RV   SD+V  G 
Sbjct: 255 LDDQPILYKIYDGVVTGVKDFGAFVNLKGVKGKVDGLVHVSAMLEGARVNHPSDLVSRGQ 314

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            V VK++      +I LSMK VDQ TG
Sbjct: 315 PVKVKVISIQG-SRIGLSMKEVDQVTG 340


>gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
 gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
          Length = 391

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +EAAR+  RS I D  +     KG V  ++DFGAFV   G  DGL+HIS+LS   V + S
Sbjct: 189 LEAARKAERSEILDKLKPGMKLKGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNQPS 247

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           +VVK G  V V++LD D +R +I L +K   Q T  P
Sbjct: 248 EVVKVGQEVEVQVLDVDLNRERISLGLK---QTTEDP 281



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G+V K++ FGAFV      +GLVHIS++S + V   + V K GDTV VK+++ D
Sbjct: 291 IGAIIEGKVTKLVTFGAFVDLGDGVEGLVHISEMSKQHVDAPAQVCKVGDTVQVKVMEVD 350

Query: 679 -DRGKIKLSMKVVDQNTGK 696
            +R +I LSMK   +  G+
Sbjct: 351 LERRRISLSMKAAAETLGQ 369


>gi|261188658|ref|XP_002620743.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081]
 gi|239593101|gb|EEQ75682.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081]
          Length = 1213

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGD 668
           + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD+V +G 
Sbjct: 249 LDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQDGARVNHPSDLVSKGQ 308

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            V VK+       +I LSMK VDQ TG+
Sbjct: 309 PVKVKVNTIQG-ARIGLSMKEVDQVTGR 335


>gi|225027431|ref|ZP_03716623.1| hypothetical protein EUBHAL_01687 [Eubacterium hallii DSM 3353]
 gi|224955258|gb|EEG36467.1| hypothetical protein EUBHAL_01687 [Eubacterium hallii DSM 3353]
          Length = 628

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGK 682
           G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+K G  V  K++DF  DDR K
Sbjct: 559 GKVARMTDFGAFVELEPGVDALLHVSQIAKEHIEKPSDVLKVGQEVTAKVVDFKKDDR-K 617

Query: 683 IKLSMKVVDQ 692
           I LS+K +D 
Sbjct: 618 ISLSIKALDN 627



 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAF+   GA DGL+HIS++S  RV     V   G+ + V + D     KI
Sbjct: 475 EGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFTVGEKLNVLIKDIQGE-KI 532

Query: 684 KLSMKVVDQN 693
            LS+K  + N
Sbjct: 533 ALSLKFPETN 542


>gi|123430773|ref|XP_001307952.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
 gi|121889607|gb|EAX95022.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
          Length = 125

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V KV  FGAFV     + GLVHIS+++   V   ++ + EGD V VK+L  D+RG
Sbjct: 8   IVEGVVTKVAKFGAFVDLKDGKSGLVHISEIADTFVKNINNHISEGDEVKVKVLSIDERG 67

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 68  KIALSIK 74


>gi|121999024|ref|YP_001003811.1| RNA-binding S1 domain-containing protein [Halorhodospira halophila
           SL1]
 gi|121590429|gb|ABM63009.1| RNA binding S1 domain protein [Halorhodospira halophila SL1]
          Length = 798

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A RE +  I D+ E   + +G V  V +FGAFV     +DGLVHIS L+ E V    D V
Sbjct: 649 AFREGVEKIQDL-EPGMVLEGTVTNVANFGAFVDIGVHQDGLVHISALAHEFVRDPRDKV 707

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + GD V VK+++ D +R +I LSM++ D
Sbjct: 708 RTGDVVQVKVMEVDLERQRIGLSMRLDD 735


>gi|325262655|ref|ZP_08129392.1| 40S ribosomal protein S1 [Clostridium sp. D5]
 gi|324032487|gb|EGB93765.1| 40S ribosomal protein S1 [Clostridium sp. D5]
          Length = 231

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E +A  E I SI    +   + +G V  + ++GAF+       GLVHISQ+S +R+    
Sbjct: 116 EQQARAEQIASI----KTGTVMEGTVETLQNYGAFIKLDNGLSGLVHISQISQKRIKTPG 171

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +V+K GDTV VK++   + GKI LSMK +++N
Sbjct: 172 EVLKVGDTVKVKVIGIKE-GKISLSMKALEEN 202


>gi|254673894|emb|CBA09677.1| putative transcription accessory protein [Neisseria meningitidis
           alpha275]
          Length = 757

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEIGDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D  R +I L+M++ D+  G
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|325678555|ref|ZP_08158166.1| S1 RNA binding domain protein [Ruminococcus albus 8]
 gi|324109774|gb|EGC03979.1| S1 RNA binding domain protein [Ruminococcus albus 8]
          Length = 159

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KIY+G+V  +  FGAFV       G+VHIS+++   V +  D ++EG TV VK+L  
Sbjct: 4   EVGKIYEGKVTGITKFGAFVELDKDTTGMVHISEVANTFVNEIKDHLQEGQTVKVKVLSL 63

Query: 678 DDRGKIKLSMK 688
            + GKI LS+K
Sbjct: 64  GEDGKISLSIK 74


>gi|75763037|ref|ZP_00742826.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489469|gb|EAO52896.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 313

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E+E   +   +I+ + E   + +G V ++ DFGAFV+  G  DGLVHISQ+S 
Sbjct: 96  LSHKAVVELELDSKKKEAISSLKE-GDVVEGTVQRLTDFGAFVNVGGV-DGLVHISQISH 153

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ERV + S+V+++G  V VK+L  D D  +I LS+K
Sbjct: 154 ERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIK 188



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 207 IREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 266

Query: 682 K-IKLSMK 688
           K I LS+K
Sbjct: 267 KRISLSIK 274


>gi|255066133|ref|ZP_05317988.1| protein YhgF [Neisseria sicca ATCC 29256]
 gi|255049678|gb|EET45142.1| protein YhgF [Neisseria sicca ATCC 29256]
          Length = 756

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V    +VVK G
Sbjct: 629 EGIHEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713


>gi|187777235|ref|ZP_02993708.1| hypothetical protein CLOSPO_00782 [Clostridium sporogenes ATCC
           15579]
 gi|187774163|gb|EDU37965.1| hypothetical protein CLOSPO_00782 [Clostridium sporogenes ATCC
           15579]
          Length = 718

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G V  V DFGAFV     +DGLVHISQLS   V    DVVK GD V V++L+ D  R
Sbjct: 650 ILMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDQKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 NRISLSMK 717


>gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
 gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
          Length = 687

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+VV ++DFGAFV      +GLVH+S++S E V K SD +  GD + VK++  
Sbjct: 549 EVGDVVTGKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISI 608

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +  K+ LS+K + +   +P
Sbjct: 609 DKEEEKVGLSIKALKEAPERP 629


>gi|254362451|ref|ZP_04978560.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
 gi|153094040|gb|EDN74956.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
          Length = 774

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 644 VEEITDL-KAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDV 702

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+L+ D  R +I L+M++ D+ T K
Sbjct: 703 VKVKVLEVDAARKRIALTMRLDDKPTDK 730


>gi|310642586|ref|YP_003947344.1| RNA binding s1 domain protein [Paenibacillus polymyxa SC2]
 gi|309247536|gb|ADO57103.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2]
          Length = 408

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE EA +  ++ + ++ E  +I  G V ++  FGAFV   G  DGLVH+S+++   V K 
Sbjct: 184 AEFEANK--LKVMAELKEGQEIV-GTVQRLTQFGAFVDVGGV-DGLVHVSEIAWTHVDKP 239

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           SD V EGD V VK+L  D ++GKI LSMK
Sbjct: 240 SDAVSEGDQVKVKVLKVDPEKGKISLSMK 268



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N I  G V ++++FGAFV      +GLVHISQ+S + +    +V++EG  V VK+L+ + 
Sbjct: 285 NDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILEMNP 344

Query: 680 RGK-IKLSMKVVDQ 692
             K + LS+K  ++
Sbjct: 345 SEKRVSLSIKETEE 358


>gi|308069530|ref|YP_003871135.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
 gi|305858809|gb|ADM70597.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
          Length = 408

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE EA +  ++ + ++ E  +I  G V ++  FGAFV   G  DGLVH+S+++   V K 
Sbjct: 184 AEFEANK--LKVMAELKEGQEIV-GTVQRLTQFGAFVDVGGV-DGLVHVSEIAWTHVDKP 239

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           SD V EGD V VK+L  D ++GKI LSMK
Sbjct: 240 SDAVSEGDQVKVKVLKVDPEKGKISLSMK 268



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N I  G V ++++FGAFV      +GLVHISQ+S + +    +V++EG  V VK+L+ + 
Sbjct: 285 NDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLEEGQEVKVKILEMNP 344

Query: 680 RGK-IKLSMKVVDQ 692
             K + LS+K  ++
Sbjct: 345 SEKRVSLSIKETEE 358


>gi|261494117|ref|ZP_05990620.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496042|ref|ZP_05992452.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308292|gb|EEY09585.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310283|gb|EEY11483.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 774

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 644 VEEITDL-KAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDV 702

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+L+ D  R +I L+M++ D+ T K
Sbjct: 703 VKVKVLEVDAARKRIALTMRLDDKPTDK 730


>gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
 gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
          Length = 718

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G++  V+DFGAFV      DGLVHIS++S+E V    +VVK GD V +K+L+ D  R
Sbjct: 650 ILQGEIRNVVDFGAFVDIGVKEDGLVHISEMSSEYVEDPFEVVKVGDVVKIKILEIDSAR 709

Query: 681 GKIKLSM 687
            +I L+M
Sbjct: 710 KRIALTM 716


>gi|254520236|ref|ZP_05132292.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913985|gb|EEH99186.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 382

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+VVK ++FGAFV      +GLVHI++++ E +AK SDV+K G  V VK+LD D   
Sbjct: 284 ILDGKVVKFLNFGAFVEIFPGVEGLVHINEITDENIAKPSDVLKLGQNVKVKVLDVDKTN 343

Query: 682 K-IKLSMK 688
           K I L++K
Sbjct: 344 KRISLTIK 351



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G V K++  GA V   G   GL+H++ LS  R+ +  DVV  GD V V + + D +  ++
Sbjct: 202 GVVKKIIKAGAIVDIGGIT-GLIHLNDLSWSRIHRAEDVVNIGDKVEVFIGEVDVKNERV 260

Query: 684 KLSMKVVDQN 693
            L +K +DQ+
Sbjct: 261 SLILKDIDQD 270


>gi|169839094|ref|ZP_02872282.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7
           single-cell isolate TM7a]
          Length = 43

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY 107
           YA GK PGG+++RE++P  +EILISR+IDR IRPLF + +
Sbjct: 3   YASGKFPGGFIKRETKPGTDEILISRLIDRPIRPLFPEGF 42


>gi|149376223|ref|ZP_01893987.1| Transcriptional accessory protein [Marinobacter algicola DG893]
 gi|149359420|gb|EDM47880.1| Transcriptional accessory protein [Marinobacter algicola DG893]
          Length = 776

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD V VK++D D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPREVVKAGDIVKVKVMDVDIPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ DQ
Sbjct: 713 KRIALSMRMDDQ 724


>gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 337

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 604 EAAREMI-----RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           EAARE +     R I    EV  I  G V  +  +GAF+       GLVHISQ+S++R+ 
Sbjct: 216 EAAREKLQEEKKRRIAKC-EVGVIMDGTVDSIKPYGAFISLENGLSGLVHISQISSKRIP 274

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             S V+KEG  V VK++   D  KI LSMK V+ N
Sbjct: 275 HPSAVLKEGQKVTVKIISTAD-NKISLSMKAVEAN 308


>gi|168698087|ref|ZP_02730364.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246]
          Length = 546

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 29/245 (11%)

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGI----SENIMVMALQQAKRGR 528
           ++ + ++G   +   +  +VAG    + A Q+D+ ++  +     + + VM  +     R
Sbjct: 254 VVEAKVTGTNKNKTGLTIEVAGIKGFLPASQLDLYRVENVDQFVGQRLKVMVSEVNPEER 313

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG-------IVEQT 581
             I++  + +  E +++  EF   VE   +    +R+V   G  V  G       + E +
Sbjct: 314 NLIVSRRAVLEREKQVKAEEFWRTVEKDQVRKGIVRSVKPFGAFVDLGGADGLIPVSEFS 373

Query: 582 GAKVNIDDDGTVKIASSSLAEIEA----AREM---IRSITDVP--EVNKIYK------GQ 626
             +VN D +  VKI      +I      AR++   +R++T  P  E  K  +      G+
Sbjct: 374 WQRVN-DLNEVVKIGQEVEVKISKIDFEARKIGLSMRALTTSPFEEFTKTTQAGARVTGK 432

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKL 685
           V ++ DFGAFV      +GL+H+S+LST+RV + SDV++ G  V V++L  D   K I L
Sbjct: 433 VSRLADFGAFVELAPGLEGLIHVSELSTQRVRRVSDVIEPGQNVIVEILSTDPVTKRIAL 492

Query: 686 SMKVV 690
           S+K +
Sbjct: 493 SLKKI 497


>gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
 gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
          Length = 337

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 7/95 (7%)

Query: 604 EAAREMI-----RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           EAARE +     R I    EV  I  G V  +  +GAF+       GLVHISQ+S++R+ 
Sbjct: 216 EAAREKLQEEKKRRIAKC-EVGVIMDGTVDSIKPYGAFISLENGLSGLVHISQISSKRIP 274

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             S V+KEG  V VK++   D  KI LSMK V+ N
Sbjct: 275 HPSAVLKEGQKVTVKIISTAD-NKISLSMKAVEAN 308


>gi|313901827|ref|ZP_07835249.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313467909|gb|EFR63401.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 558

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + DFGAF+   G  DGL+H+S++   R+    D++KEGDT+ VK+L  
Sbjct: 344 EEGQVRTGVVKGLTDFGAFIDLGGV-DGLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLKV 402

Query: 678 D-DRGKIKLSMK 688
           D +RG+I LS+K
Sbjct: 403 DRERGRISLSLK 414



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V    KG VV+++ FGAFV      +GLVHISQL+  RV    +VV EG  V V++L   
Sbjct: 430 VGATVKGTVVRLVPFGAFVRLEPGVEGLVHISQLADHRVESPDEVVHEGQEVEVRVLRVQ 489

Query: 679 -DRGKIKLSMK 688
            +  +I LSM+
Sbjct: 490 PEERRISLSMR 500


>gi|260587822|ref|ZP_05853735.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia
           hansenii DSM 20583]
 gi|331083824|ref|ZP_08332933.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542087|gb|EEX22656.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia
           hansenii DSM 20583]
 gi|330403249|gb|EGG82809.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 361

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G++ ++ DFGAF+      D L+H+SQ+S   V K SDV+K G  V  K++DF+
Sbjct: 276 VGNVVEGKIARMTDFGAFIELEPGVDALLHVSQISRAHVEKPSDVLKVGQVVTAKVVDFN 335

Query: 679 -DRGKIKLSMKVVD 691
            +  KI LSMKV++
Sbjct: 336 EEEKKISLSMKVLE 349



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 6/88 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM + + +      + +G +  V DFGAF+   GA DGL+HIS++S  RV     V K G
Sbjct: 182 EMKKELFERIHAGDVVEGTIKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKAG 240

Query: 668 D--TVWVKLLDFDDRGKIKLSMKVVDQN 693
           +  TV +K ++ D   KI LS+K  DQN
Sbjct: 241 EKITVLIKEINGD---KIALSLKFEDQN 265


>gi|262166725|ref|ZP_06034462.1| transcription accessory protein [Vibrio mimicus VM223]
 gi|262026441|gb|EEY45109.1| transcription accessory protein [Vibrio mimicus VM223]
          Length = 773

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGMVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVKRKRIALSMRLNDE 724


>gi|157676012|emb|CAP07847.1| putative transcriptional accessory protein [Neisseria iguanae]
          Length = 764

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGIHEIKDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713


>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
 gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
          Length = 383

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++ +FGAFV   G  DGLVHIS+L+  RV   S+VVKEGD V VK+L  D +R
Sbjct: 191 IITGKVQRLTNFGAFVDVGGV-DGLVHISELAWHRVEHPSEVVKEGDEVTVKVLKVDPER 249

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 250 ERVSLSIK 257



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V +++ FGAFV      +GLVHISQ++  R+    +V++ G  V VK+LD +
Sbjct: 273 VGDVVTGTVRRLVSFGAFVELEPGVEGLVHISQIANRRIGTPQEVLEPGQEVRVKILDVN 332

Query: 679 DRG-KIKLSMK 688
           +   +I LS++
Sbjct: 333 EEDQRISLSIR 343



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 610 IRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +R +TD+  ++K  + KG++ K+ D   FV      DG++ I +LS  RV   SDVV+ G
Sbjct: 4   MRDMTDLVALHKGDVVKGRITKIEDGQVFVDVGYKFDGVIPIGELSALRVESPSDVVQVG 63

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691
           D V V++   +D  GK+ LS K VD
Sbjct: 64  DEVEVRVQRINDEEGKLVLSKKAVD 88


>gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469]
 gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469]
          Length = 253

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 23/204 (11%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R   R  + +R ++ +  L++   GS L   GDT+ +   T+     E+ V +    
Sbjct: 14  QPLRSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATI-----EEGVPAWRRA 68

Query: 370 QRNDFMM-HYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            R  ++   Y  LP +T + ++    +R  R +   RL  R++  V+       YT+ + 
Sbjct: 69  SRAGWVTAEYAMLPASTNQRTKRERANRKGRSMEIERLIGRSLRSVVDLNRLGEYTITLD 128

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL DA            +P++  VA I+MG+V    D  +
Sbjct: 129 CDVLQADGGTRTASITGAWVALHDALFSLVEKDVLSRLPLTGQVAAISMGVV----DGQV 184

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+   ED    +D  + GT+SG
Sbjct: 185 LLDLDYPEDSHADIDMNLVGTESG 208



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 25/187 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+ LE   + + +DG+ L ++G+T VL       ++++G   +         T     +
Sbjct: 27  RPVTLERN-LMKNADGSCLVSFGDTRVLCAA----TIEEGVPAWRRASRAGWVTAEYAML 81

Query: 74  PGGYLRRESRPTENE----ILISRMIDRSIRPLFSKCYKNETQVIIN--VMQHDLESSPH 127
           P    +R  R   N     + I R+I RS+R +       E  + ++  V+Q D      
Sbjct: 82  PASTNQRTKRERANRKGRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQAD--GGTR 139

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175
             S+  A  AL           +LS LP  G V    +  ++GQ +L+    ED    +D
Sbjct: 140 TASITGAWVALHDALFSLVEKDVLSRLPLTGQVAAISMGVVDGQVLLDLDYPEDSHADID 199

Query: 176 LFVSGTQ 182
           + + GT+
Sbjct: 200 MNLVGTE 206


>gi|325510251|gb|ADZ21887.1| Transcription accessory protein TEX, RNA-binding protein containing
           S1 domain [Clostridium acetobutylicum EA 2018]
          Length = 724

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    DVVK GD V V++L+ D+ R +I
Sbjct: 659 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDEKRNRI 718

Query: 684 KLSMK 688
            L+MK
Sbjct: 719 SLTMK 723


>gi|315503018|ref|YP_004081905.1| tex-like protein protein-like protein [Micromonospora sp. L5]
 gi|315409637|gb|ADU07754.1| Tex-like protein protein-like protein [Micromonospora sp. L5]
          Length = 827

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 40/217 (18%)

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP---------- 559
            G++ENI+   L +   G      E+ KV    RL    F      + IP          
Sbjct: 530 AGLAENIV---LHRDANGPFRTRTELKKV---PRLGPKAFEQCAGFLRIPGGDDPLDSSS 583

Query: 560 --PDQ---IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA-- 606
             P+    +R ++   G+ +R ++ ++       A   +DD   +   +  LAE+E    
Sbjct: 584 VHPEAYPVVRRILSSTGQDLRALIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGR 643

Query: 607 --REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             R   R+ T V  V KI         +G V  V  FGAFV     +DGLVH+S +S   
Sbjct: 644 DPRPEFRTATFVEGVEKISDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHTF 703

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           V    DVVK GD V V++LD D  R +I L++++ D+
Sbjct: 704 VKDPRDVVKSGDVVKVRVLDVDVPRKRISLTLRLDDE 740


>gi|269926456|ref|YP_003323079.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 431

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG+V  + DFGAFV   GA DGL+H+S++S  R+   S+V+K GD V V +L+ D +
Sbjct: 261 QIVKGRVTSLADFGAFVDIGGA-DGLIHLSEISWGRINHPSEVLKPGDEVDVMVLNIDRE 319

Query: 680 RGKIKLSMK 688
             KI LSMK
Sbjct: 320 HKKIALSMK 328



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +I +G+V ++  FG FV      +GLVH+S+L   +       V+ GD + ++++  
Sbjct: 343 DVGQIVEGEVTQIAPFGVFVRLEDGIEGLVHMSELGDTK-------VQVGDKLRLRVIKM 395

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I LS++ +D+
Sbjct: 396 DTQRRRIGLSVRQLDE 411


>gi|220927810|ref|YP_002504719.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
 gi|219998138|gb|ACL74739.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
          Length = 718

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVHISQL+ + V    DVV  GD V VK+L+ D +R
Sbjct: 648 ILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKYVKNPMDVVAVGDIVKVKILEVDVER 707

Query: 681 GKIKLSMKVVD 691
            +I L+MK ++
Sbjct: 708 KRISLTMKEIN 718


>gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
          Length = 395

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++ D   V  + +G+V ++ +FGAF+   G  DGLVH+S++S ERV K SDV+K G  V
Sbjct: 188 KAVLDKLVVGDVVEGKVARLTNFGAFIDLGGV-DGLVHVSEISFERVGKPSDVLKVGQDV 246

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            VK+L  D ++ +I LS+K
Sbjct: 247 KVKVLAVDPEKDRISLSIK 265



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G+ V VK+L+ + + 
Sbjct: 284 VLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPNEVLASGEKVKVKVLNVNAEE 343

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K + + 
Sbjct: 344 HRLALSIKALQEK 356


>gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229552180|ref|ZP_04440905.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|258508384|ref|YP_003171135.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|258539595|ref|YP_003174094.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus Lc 705]
 gi|199590391|gb|EDY98483.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229314482|gb|EEN80455.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|257148311|emb|CAR87284.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus GG]
 gi|257151271|emb|CAR90243.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus Lc 705]
 gi|259649698|dbj|BAI41860.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
          Length = 436

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 6/89 (6%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           ++ EA +E+   I    +   + +G+V ++ +FGAFV   G  DGLVH+S++S + V K 
Sbjct: 188 SKAEARKEIFAKI----QPGDVVEGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKP 242

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           SDV+K G  + VK+L+ D DR +I LS+K
Sbjct: 243 SDVLKVGQEIKVKVLNVDPDRNRISLSIK 271



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S E VA  +DV+KEG  V VK+L  D D 
Sbjct: 290 VLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDA 349

Query: 681 GKIKLSMKVV 690
            ++ LS+K +
Sbjct: 350 HRLALSIKAL 359


>gi|15896097|ref|NP_349446.1| transcription accessory protein [Clostridium acetobutylicum ATCC
           824]
 gi|15025886|gb|AAK80786.1|AE007781_9 Transcription accessory protein TEX, RNA-binding protein containing
           S1 domain [Clostridium acetobutylicum ATCC 824]
          Length = 718

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    DVVK GD V V++L+ D+ R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDEKRNRI 712

Query: 684 KLSMK 688
            L+MK
Sbjct: 713 SLTMK 717


>gi|295107401|emb|CBL04944.1| Transcriptional accessory protein [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 718

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 610 IRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           IRS  D VP +     G V  V+DFGAFV     +DGLVH+S+L+   V   S+VV  GD
Sbjct: 636 IRSFDDLVPGME--LTGTVRNVVDFGAFVDIGVKQDGLVHVSKLADRFVRHPSEVVAVGD 693

Query: 669 --TVWVKLLDFDDRGKIKLSM 687
             TVWV  +D  DRGKI LSM
Sbjct: 694 TVTVWVTAVD-KDRGKISLSM 713


>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
          Length = 243

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R+   ++G+ +  HGSS    G+T+ +  V       E Y+   S  ++
Sbjct: 13  LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNV---NGPSEPYIKGKSKQEK 69

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRR----EIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
               +  NF P +  +  +     +R     +   R   +AI   L   +Q   +L ++ 
Sbjct: 70  AFINVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL- 128

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
              E DG +    +  ++LAL+DAG+ +   V     G+ +     ++L   + +E  + 
Sbjct: 129 ---EDDGGAIATCINAATLALIDAGIAMVDYVCCATAGIYETQ---VLLDLNTNEESDIS 182

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            M   V GT   +T ++ + K   +S ++   AL  A  G  HI  +M KV+ +S
Sbjct: 183 WMTVGVLGTKGKVTYLKQETK---LSLDLFEPALTTAIAGCDHIALQMQKVVRQS 234


>gi|293374966|ref|ZP_06621261.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909]
 gi|325843363|ref|ZP_08167946.1| putative ribosomal protein S1 [Turicibacter sp. HGF1]
 gi|292646376|gb|EFF64391.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909]
 gi|325489392|gb|EGC91765.1| putative ribosomal protein S1 [Turicibacter sp. HGF1]
          Length = 559

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 14/141 (9%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
           EI  +P +++ + + +  +V   +++  G K+ +     +        ++          
Sbjct: 230 EISHLPVEKVEDALTVNQEVSAKVIKVEGTKIQLSIKAVLPTPFEQFVQVHHE------- 282

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
                 N++ +G VV++ +FGAFV      +GLVH+S+LS +  AK  +VV EG  V V+
Sbjct: 283 ------NEVLEGTVVRLTEFGAFVELAKGVEGLVHLSELSWDHKAKLEEVVSEGQKVQVR 336

Query: 674 LLDFDDR-GKIKLSMKVVDQN 693
           ++  D +  +I LS+K V+Q+
Sbjct: 337 IILLDKKHNRIGLSLKKVEQD 357



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+VV++  FGAFV F GA +GLVHIS++S   V K  D +     V  K++  +
Sbjct: 199 VGDIVTGKVVRLEKFGAFVRF-GALEGLVHISEISHLPVEKVEDALTVNQEVSAKVIKVE 257

Query: 679 DRGKIKLSMKVV 690
              KI+LS+K V
Sbjct: 258 GT-KIQLSIKAV 268



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +P VN I +G VV+V +    V   GA +G +++++L+ ++V    DVVK GDT+
Sbjct: 25  LPSVNDIVEGVVVRVSNQEVTVDIGGATEGTIYLNELTLDKVESAKDVVKVGDTI 79


>gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 259

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      EV++ G PS R +   RL  R++  V+        T+ I  
Sbjct: 59  WITSEYGMLPRATETRNPREVTK-GRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL DA            +P+   VA +++G+V DG+  +  
Sbjct: 118 DVIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIV-DGNKLL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+S  ED    +D  V  TD G
Sbjct: 175 -DLSFQEDSNALVDMNVVMTDKG 196


>gi|209693812|ref|YP_002261740.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238]
 gi|208007763|emb|CAQ77882.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238]
          Length = 778

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + +++D+ E+  I +G V  V +FGAFV     +DGLVHIS LS   V+   +VVK GD 
Sbjct: 639 VNTVSDL-ELGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDI 697

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I L+M++ DQ
Sbjct: 698 VKVKVMEVDAQRKRIALTMRLNDQ 721


>gi|308047928|ref|YP_003911494.1| Tex-like protein [Ferrimonas balearica DSM 9799]
 gi|307630118|gb|ADN74420.1| Tex-like protein [Ferrimonas balearica DSM 9799]
          Length = 775

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E  A  E +  ++D+ E   + +G V  V +FGAFV     +DGLVHIS LS + V    
Sbjct: 634 ETAAFAEGVEKVSDL-EPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALSNKFVEDPR 692

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            VVK GD V VK+++ D  R +I LSM++ DQ
Sbjct: 693 TVVKAGDVVKVKVMEVDVPRQRIGLSMRLDDQ 724


>gi|299144362|ref|ZP_07037442.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518847|gb|EFI42586.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 680

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+VV +++FGAF+      DGL+H+SQ+S E V K +D +  G+ V VK+ D 
Sbjct: 552 QVGDVVEGKVVNLLEFGAFIRLESGVDGLLHVSQISKEHVEKPADKLTMGEEVTVKITDI 611

Query: 678 DDRG-KIKLSMKVV 690
           D+   KI LSMK +
Sbjct: 612 DEENKKISLSMKAL 625



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 8/97 (8%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+EA R   +S+ +  +   + +G V ++ +FGAF+   G  DGL+HIS+LS  RV   +
Sbjct: 454 ELEAKR---KSVYESLQEGDVIEGTVQRLTNFGAFIDLGGV-DGLIHISELSWNRVKHPA 509

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           DVV  G  V V++L  D ++ +I L +K   Q T KP
Sbjct: 510 DVVAPGQKVEVQVLTVDEEKNRIALGLK---QTTKKP 543


>gi|23005787|ref|ZP_00048431.1| COG2183: Transcriptional accessory protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 125

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R 
Sbjct: 7   LEGVVTNVAAFGAFVEIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLAVDVPRK 66

Query: 682 KIKLSMKVVDQNTGKP 697
           +I LSM++ D   G P
Sbjct: 67  RISLSMRLDDPIDGTP 82


>gi|183597001|ref|ZP_02958494.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827]
 gi|188023656|gb|EDU61696.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827]
          Length = 777

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK++D D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVMDVDIPR 711

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ +Q
Sbjct: 712 KRIALSMRLDEQ 723


>gi|50289563|ref|XP_447213.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526522|emb|CAG60146.1| unnamed protein product [Candida glabrata]
          Length = 1135

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 8/72 (11%)

Query: 631 MDFGAFVHF------CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           M FG FV        CG  +GLVHIS+L   +V   SDVVK+G TV+VK+      GKI 
Sbjct: 192 MPFGCFVQILHLKKECG--EGLVHISELCKNKVRHPSDVVKQGQTVYVKISKIMTNGKIS 249

Query: 685 LSMKVVDQNTGK 696
           LSM  +DQ +GK
Sbjct: 250 LSMINIDQVSGK 261


>gi|291560699|emb|CBL39499.1| Ribosomal protein S1 [butyrate-producing bacterium SSC/2]
          Length = 232

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  +M +GAFV       GLVHISQLS +RV    +VVKEGD V VK++   
Sbjct: 127 VGTVVEGTVENIMPYGAFVDIGDGISGLVHISQLSQKRVKSPEEVVKEGDAVTVKIIKVA 186

Query: 679 DRGKIKLSMKVVDQN 693
           + GK+ LS+K ++ +
Sbjct: 187 N-GKVSLSIKALEDD 200


>gi|304315782|ref|YP_003850927.1| RNA binding S1 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777284|gb|ADL67843.1| RNA binding S1 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 140

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V+ + DFGAFV     + GLVHIS+++   V   ++ +KE D V VK+L  
Sbjct: 4   QVGEVVEGTVLNITDFGAFVQLPEGKTGLVHISEVANTYVKDINEFLKENDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DKGGRISLSIK 74


>gi|317121948|ref|YP_004101951.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591928|gb|ADU51224.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
          Length = 598

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + DFGAF+   G  DGL+H+S++   R+    D++KEGDT+ VK+L  
Sbjct: 380 EEGQVRTGVVKGLTDFGAFIDLGGV-DGLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLRV 438

Query: 678 D-DRGKIKLSMK 688
           D +RG+I LS+K
Sbjct: 439 DRERGRISLSLK 450



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V    KG VV+++ FGAFV      +GLVHISQL+  RV    +VV+EG  V V++L   
Sbjct: 466 VGATVKGTVVRLVPFGAFVRLEPGVEGLVHISQLADHRVESPDEVVQEGQQVEVRVLRVQ 525

Query: 678 -DDRGKIKLSM 687
            +DR +I LSM
Sbjct: 526 PEDR-RISLSM 535


>gi|255327380|ref|ZP_05368454.1| protein YhgF [Rothia mucilaginosa ATCC 25296]
 gi|255295660|gb|EET75003.1| protein YhgF [Rothia mucilaginosa ATCC 25296]
          Length = 835

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  V  FGAFV     +DGLVHISQ+S   VA   D+V+ GD V V++++ D  R
Sbjct: 763 VLEGTVSNVAAFGAFVDIGVHQDGLVHISQMSRGYVANPHDIVRSGDIVQVRVVEVDPVR 822

Query: 681 GKIKLSMKVVDQN 693
            +I LS+ V D+N
Sbjct: 823 RRISLSLLVEDEN 835


>gi|168182214|ref|ZP_02616878.1| RNA-binding protein [Clostridium botulinum Bf]
 gi|237793495|ref|YP_002861047.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182674704|gb|EDT86665.1| RNA-binding protein [Clostridium botulinum Bf]
 gi|229263673|gb|ACQ54706.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 718

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|327485186|gb|AEA79593.1| Transcription accessory protein (S1 RNA-binding domain) [Vibrio
           cholerae LMA3894-4]
          Length = 773

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDLQRKRIALSMRLNDE 724


>gi|255284500|ref|ZP_05349055.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella
           formatexigens DSM 14469]
 gi|255264957|gb|EET58162.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella
           formatexigens DSM 14469]
          Length = 361

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++ DFGAFV      D L+H+SQ+S E V K SDV+K G  +  K++DF+ + 
Sbjct: 276 IVTGRVARMTDFGAFVELEPGVDALLHVSQISHEHVDKPSDVLKVGQQIEAKVVDFNEEE 335

Query: 681 GKIKLSMKVVDQNT 694
            KI LSMK ++  +
Sbjct: 336 KKISLSMKALENTS 349



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM +++ +   V  + +G V  + DFGAFV   GA DGL+HIS++S  RV     +   G
Sbjct: 179 EMQKALFERIHVGDVVEGVVKNITDFGAFVDLGGA-DGLLHISEMSWGRVDNPRKLFNVG 237

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D + V L D +   KI LS+K  D+N
Sbjct: 238 DKLKVLLKDINGN-KIALSLKFEDEN 262


>gi|108763761|ref|YP_631975.1| 30S ribosomal protein S1 [Myxococcus xanthus DK 1622]
 gi|108467641|gb|ABF92826.1| ribosomal protein S1 [Myxococcus xanthus DK 1622]
          Length = 570

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           KG+V KV DFGAFV      +GLVH+S+L  ERV    DVV+E   V VK++D +  DR 
Sbjct: 471 KGKVTKVTDFGAFVEIEPGIEGLVHVSELKEERVENPRDVVQEAQDVEVKIIDINTPDR- 529

Query: 682 KIKLSMKVV 690
           K+ LSMK +
Sbjct: 530 KVALSMKAL 538



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G+VV + D+GAF+      +GLVH+S++S T+R+   S +++ G  V   +LD D + K
Sbjct: 297 RGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAK 356

Query: 683 -IKLSMKVVDQN 693
            I L MK ++QN
Sbjct: 357 RIALGMKQIEQN 368



 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E ++++ +      + KG V  + D+GAF+   G  DGL+HI+ +S  R+   S++
Sbjct: 196 EMKKETLKNLKE----GAVLKGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRIGHPSEM 250

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              GD V V +L FD  + ++ L +K + ++
Sbjct: 251 FNVGDEVRVVVLKFDPTQERVSLGLKQIQED 281



 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  + KGQ+  V DFG FV      DGLVH+S +S T R+    ++ K+GD V   +L+ 
Sbjct: 379 IGSVIKGQIRNVTDFGVFVGVEEGVDGLVHVSDISWTVRIKHPGEMFKKGDEVEAVVLNI 438

Query: 678 D 678
           D
Sbjct: 439 D 439


>gi|261344527|ref|ZP_05972171.1| protein YhgF [Providencia rustigianii DSM 4541]
 gi|282567440|gb|EFB72975.1| protein YhgF [Providencia rustigianii DSM 4541]
          Length = 776

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+LD D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVLDVDIPR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
 gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
 gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
 gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
 gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
          Length = 245

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 21/252 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 66  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 174

Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM--S 536
             E+  G     +A       I  ++MD ++       ++ A  QA RG +H L ++   
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARG-VHTLLDLVVR 233

Query: 537 KVLSESRLQLGE 548
           + + E+ + LG+
Sbjct: 234 QHVQEASVSLGD 245


>gi|134299017|ref|YP_001112513.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134051717|gb|ABO49688.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           reducens MI-1]
          Length = 672

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I+  +VV++  FGAFV      +GLVHIS L+   V K  DVVKEG+ V VK+L  D
Sbjct: 555 VGNIFNAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVEKPEDVVKEGEEVQVKVLSMD 614

Query: 679 DRGK-IKLSMKVVD 691
              K ++LS++ V+
Sbjct: 615 PSEKRVRLSIREVN 628



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E + AR+    +  + E  +I KG V ++ +FGAFV   G  DGL+HIS++
Sbjct: 445 VVVSRKAVLEEQNARKREELLASLQE-GQIVKGIVRRITNFGAFVDL-GGLDGLLHISEM 502

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693
           S  R+    +VVK GD + V +L  D +  KI L +K V  N
Sbjct: 503 SWHRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVLPN 544


>gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 480

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N +YKGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 205 LNNLYKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVE 263

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L+ D DR ++ LS+K   ++
Sbjct: 264 ILEVDLDRERVSLSLKATQED 284



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+LS + V     VV  G+ V+VK++D D
Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGEEVFVKVIDID 354

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 355 LERRRISLSLKQANE 369


>gi|229527358|ref|ZP_04416750.1| transcription accessory protein [Vibrio cholerae 12129(1)]
 gi|229334990|gb|EEO00475.1| transcription accessory protein [Vibrio cholerae 12129(1)]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDLQRKRIALSMRLNDE 724


>gi|153825500|ref|ZP_01978167.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149740785|gb|EDM54876.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
 gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
 gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
 gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
          Length = 241

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 22/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I A+VG++ +  GS++F  G+T+ I  V  G RE    + + S  ++
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV-YGPRE----IQNKSQQKK 63

Query: 372 ND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
           ND    +  Y+    +TG+  R     RR      + R+ +   +  T   P++ + I  
Sbjct: 64  NDHAVVLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACI-LTELMPHSQIDIFL 121

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           ++ ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED  G
Sbjct: 122 QVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP----LLDLNYVEDSAG 177

Query: 488 HMDFKVAGTDS--GITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             D  V        ++ +QMD K+   + E +  +A +  K     I   + +VL E+  
Sbjct: 178 GADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCK----AIAERIREVLQENTK 233

Query: 545 QL 546
           QL
Sbjct: 234 QL 235


>gi|317128562|ref|YP_004094844.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473510|gb|ADU30113.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 382

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 6/88 (6%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E  R+ + SI    +V  + +G+V ++ DFGAFV   G  DGLVHISQ++   V   S
Sbjct: 175 ENEKKRKTLTSI----QVGDVLEGKVQRLTDFGAFVDIGGV-DGLVHISQMAHHHVDAPS 229

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +VV EGD + VK+L  D D  +I LS+K
Sbjct: 230 EVVSEGDQIKVKVLGVDPDNERISLSIK 257



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V +++ FGAFV      +GLVHISQ++   +    +V+KEG+ V  K+LD +   
Sbjct: 274 VIEGKVKRLVSFGAFVEVADGVEGLVHISQIANRHIGTPGEVLKEGENVSAKVLDVNLAD 333

Query: 682 K-IKLSMKVV 690
           K I LS++ +
Sbjct: 334 KRISLSIRAI 343



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 607 REMIRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            EM   + DV    V +   G + KV +  AFV+     DG++ IS+LS+  V + SDV+
Sbjct: 3   EEMNNEMADVKSFSVGETVIGTITKVEEKQAFVNVGYKMDGIIPISELSSLHVEQVSDVL 62

Query: 665 KEGDTVWVKLLDFDD 679
            EGD V ++++   D
Sbjct: 63  SEGDEVELQIIKSTD 77


>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105]
 gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105]
          Length = 493

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I +G+V K++ FG FV      +GL+HIS+L+   V     VVK G+T++VK
Sbjct: 290 THVP--GQIVRGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVENPETVVKPGETIFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G +  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QVREGTISSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|291563829|emb|CBL42645.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4]
          Length = 359

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E VAK +DV+  G  +  K++DF+
Sbjct: 276 VGNVVTGKVARMTDFGAFVELEPGVDALLHVSQISREHVAKPADVLSIGQEITAKIVDFN 335

Query: 679 --DRGKIKLSMKVVDQNT 694
             DR KI LSMK ++ + 
Sbjct: 336 EADR-KISLSMKALEADN 352



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM +++ +   V    +G V  V DFGAF+   GA DGL+HIS++S  R+     V K G
Sbjct: 182 EMQKALFEKIHVGDKVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRIENPKKVFKVG 240

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D V   + D +   KI LSMK  + N
Sbjct: 241 DKVTALIKDINGE-KIALSMKFPETN 265


>gi|229516964|ref|ZP_04406410.1| transcription accessory protein [Vibrio cholerae RC9]
 gi|229346027|gb|EEO10999.1| transcription accessory protein [Vibrio cholerae RC9]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|229524694|ref|ZP_04414099.1| transcription accessory protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229338275|gb|EEO03292.1| transcription accessory protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|15642710|ref|NP_232343.1| hypothetical protein VC2716 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121726718|ref|ZP_01679943.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674924|ref|YP_001218204.1| hypothetical protein VC0395_A2288 [Vibrio cholerae O395]
 gi|153817458|ref|ZP_01970125.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821294|ref|ZP_01973961.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082830|ref|YP_002811381.1| hypothetical protein VCM66_2636 [Vibrio cholerae M66-2]
 gi|229507236|ref|ZP_04396741.1| transcription accessory protein [Vibrio cholerae BX 330286]
 gi|229509843|ref|ZP_04399324.1| transcription accessory protein [Vibrio cholerae B33]
 gi|229606742|ref|YP_002877390.1| transcription accessory protein [Vibrio cholerae MJ-1236]
 gi|254851253|ref|ZP_05240603.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744326|ref|ZP_05418278.1| transcription accessory protein [Vibrio cholera CIRS 101]
 gi|262158564|ref|ZP_06029679.1| transcription accessory protein [Vibrio cholerae INDRE 91/1]
 gi|262170042|ref|ZP_06037731.1| transcription accessory protein [Vibrio cholerae RC27]
 gi|298500469|ref|ZP_07010273.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657313|gb|AAF95856.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630879|gb|EAX63261.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126512044|gb|EAZ74638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521226|gb|EAZ78449.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146316807|gb|ABQ21346.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227010718|gb|ACP06930.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227014602|gb|ACP10812.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229353317|gb|EEO18256.1| transcription accessory protein [Vibrio cholerae B33]
 gi|229354741|gb|EEO19662.1| transcription accessory protein [Vibrio cholerae BX 330286]
 gi|229369397|gb|ACQ59820.1| transcription accessory protein [Vibrio cholerae MJ-1236]
 gi|254846958|gb|EET25372.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737851|gb|EET93244.1| transcription accessory protein [Vibrio cholera CIRS 101]
 gi|262021450|gb|EEY40162.1| transcription accessory protein [Vibrio cholerae RC27]
 gi|262029725|gb|EEY48374.1| transcription accessory protein [Vibrio cholerae INDRE 91/1]
 gi|297540638|gb|EFH76695.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|167766775|ref|ZP_02438828.1| hypothetical protein CLOSS21_01283 [Clostridium sp. SS2/1]
 gi|317499056|ref|ZP_07957337.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711529|gb|EDS22108.1| hypothetical protein CLOSS21_01283 [Clostridium sp. SS2/1]
 gi|316893706|gb|EFV15907.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 235

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  +M +GAFV       GLVHISQLS +RV    +VVKEGD V VK++   
Sbjct: 130 VGTVVEGTVENIMPYGAFVDIGDGISGLVHISQLSQKRVKSPEEVVKEGDAVTVKIIKVA 189

Query: 679 DRGKIKLSMKVVDQN 693
           + GK+ LS+K ++ +
Sbjct: 190 N-GKVSLSIKALEDD 203


>gi|70725969|ref|YP_252883.1| hypothetical protein SH0968 [Staphylococcus haemolyticus JCSC1435]
 gi|68446693|dbj|BAE04277.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 715

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    DVV  GD 
Sbjct: 633 VLSIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDVVSVGDI 691

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V V +LD D ++GK+ L+M
Sbjct: 692 VEVWILDIDKNKGKVSLTM 710


>gi|229521790|ref|ZP_04411208.1| transcription accessory protein [Vibrio cholerae TM 11079-80]
 gi|229341384|gb|EEO06388.1| transcription accessory protein [Vibrio cholerae TM 11079-80]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDLQRKRIALSMRLNDE 724


>gi|226947398|ref|YP_002802489.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841768|gb|ACO84434.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 718

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|168177509|ref|ZP_02612173.1| RNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182670333|gb|EDT82307.1| RNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 718

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|283458687|ref|YP_003363322.1| transcriptional accessory protein [Rothia mucilaginosa DY-18]
 gi|283134737|dbj|BAI65502.1| transcriptional accessory protein [Rothia mucilaginosa DY-18]
          Length = 854

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  V  FGAFV     +DGLVHISQ+S   VA   D+V+ GD V V++++ D  R
Sbjct: 782 VLEGTVSNVAAFGAFVDIGVHQDGLVHISQMSRGYVANPHDIVRSGDIVRVRVVEVDPAR 841

Query: 681 GKIKLSMKVVDQN 693
            +I LS+ V D+N
Sbjct: 842 RRISLSLLVEDEN 854


>gi|323484701|ref|ZP_08090060.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum
           WAL-14163]
 gi|323691768|ref|ZP_08106025.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum
           WAL-14673]
 gi|323401938|gb|EGA94277.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum
           WAL-14163]
 gi|323504134|gb|EGB19939.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum
           WAL-14673]
          Length = 379

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+V ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  +++DF+
Sbjct: 280 VGNIVEGKVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSAGQIITARVVDFN 339

Query: 679 --DRGKIKLSMKVVDQNTGKPI 698
             DR KI LS K ++     P+
Sbjct: 340 EADR-KISLSTKALEAPAEAPV 360



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V DFGAF+   GA DGL+HIS++S  RV     V K GD V   + D +
Sbjct: 197 VGQTVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKVGDKVTALIKDIN 255

Query: 679 DRGKIKLSMKVVDQN 693
              K+ LS+K  + N
Sbjct: 256 GE-KVALSLKFPETN 269


>gi|322804444|emb|CBZ01994.1| transcription accessory protein (S1 RNA-binding domain)
           [Clostridium botulinum H04402 065]
          Length = 718

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDQKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|301165923|emb|CBW25496.1| 30s ribosomal protein S1 [Bacteriovorax marinus SJ]
          Length = 592

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + + +VV+V DFGAFV      +GLVHIS+LS ERV K  DV+K+GD     ++  D
Sbjct: 487 VGTVVEAEVVRVTDFGAFVELETGIEGLVHISELSEERVDKPEDVIKKGDVAKAMVISID 546

Query: 679 -DRGKIKLSMK 688
            D  KI LS+K
Sbjct: 547 KDAKKIALSIK 557



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   +M + I D  +   I KG V  + D+GAF+   G  DGL+HI+ +S  RV   S++
Sbjct: 213 EERGKMRQEILDQIQEGMIVKGIVKNITDYGAFIDLGGI-DGLLHITDMSWGRVKHPSNL 271

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +  GD + VK+L FD D+ ++ L +K V  N
Sbjct: 272 LNMGDEIDVKILKFDSDKERVSLGLKQVQPN 302



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++V V D+G F+      +GL+H+S++S T ++   +     G+ +  ++LD D +  +
Sbjct: 319 GEIVSVKDYGVFIELDDGIEGLIHVSEMSWTGKIKNPAKHFNVGERIEAQVLDVDVENKR 378

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K + +N  + I
Sbjct: 379 ISLGLKQLQENPWEAI 394


>gi|212711647|ref|ZP_03319775.1| hypothetical protein PROVALCAL_02722 [Providencia alcalifaciens DSM
           30120]
 gi|212685749|gb|EEB45277.1| hypothetical protein PROVALCAL_02722 [Providencia alcalifaciens DSM
           30120]
          Length = 776

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + ++TD+     I +G V  V +FGAFV     +DGLVHIS LS   V     VVK G
Sbjct: 639 EGVETMTDLTP-GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKTG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+LD D  R +I L+M++ +Q
Sbjct: 698 DIVKVKVLDVDIARKRIALTMRLDEQ 723


>gi|229917801|ref|YP_002886447.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229469230|gb|ACQ71002.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 709

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDR 680
           ++G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD  TVW++ +D  +R
Sbjct: 638 FQGTVRNVIDFGAFVDIGVKQDGLVHISKLSNRYVKHPLDVVAVGDIVTVWIEQVDV-NR 696

Query: 681 GKIKLSM 687
           G+I L+M
Sbjct: 697 GRISLTM 703


>gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4]
 gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4]
          Length = 258

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R +    G  +   GS L   GDT+ +   ++    D++    L GT +
Sbjct: 1   MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASI----DDKVPSFLKGTGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      EV++ G PS R +   RL  R++   +   A    T+ + 
Sbjct: 57  GWVTAEYGMLPRATESRNLREVTK-GRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G  +AL+ A            +P+   VA +++G VKD      
Sbjct: 116 CDVLQADGGTRTAAITGGFVALVYALDWLRNEGAIESLPVKDLVAAVSVGKVKDA----Y 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D++  ED +  +D  V  T  G
Sbjct: 172 LLDLTFAEDSMAEVDLNVVMTGKG 195


>gi|153941426|ref|YP_001389539.1| RNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152937322|gb|ABS42820.1| RNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295317637|gb|ADF98014.1| RNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 718

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|170756784|ref|YP_001779803.1| RNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121996|gb|ACA45832.1| RNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 718

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|296110337|ref|YP_003620718.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
 gi|295831868|gb|ADG39749.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
          Length = 731

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V+DFGAFV      DGLVHIS+L+  RV K SDVV  GD + V ++D D+ R +
Sbjct: 659 QGTVRNVVDFGAFVDLGVKHDGLVHISRLAKRRVKKPSDVVSVGDIINVWVVDIDEKRQR 718

Query: 683 IKLSM 687
           I L+M
Sbjct: 719 IGLTM 723


>gi|229825037|ref|ZP_04451106.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC
           49176]
 gi|229790784|gb|EEP26898.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC
           49176]
          Length = 647

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++ DFGAF+      D L+H+SQ++T  V K SDV+K G+ V  K++DF+
Sbjct: 554 VGTIVSGKVARMTDFGAFIELEPGVDALLHVSQIATNHVEKPSDVLKTGEEVTAKVVDFN 613

Query: 679 -DRGKIKLSMKVV----DQNTGK 696
            +  KI LS+K +    D+N  K
Sbjct: 614 AETKKISLSIKALLAGADENEEK 636



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E+ +++ +   V ++  G V  V DFGAF+   GA DGL+HIS++S   +     V K 
Sbjct: 459 NELKKALFEKLAVGQVVDGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGHIENPKKVFKV 517

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GD V   + D     KI LS+K  DQN
Sbjct: 518 GDMVKTFVKDIQGE-KIALSLKFEDQN 543


>gi|225572241|ref|ZP_03781105.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040303|gb|EEG50549.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM
           10507]
          Length = 368

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E V K +DV+  G  +  K++DF+
Sbjct: 276 VGNVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPADVLNIGQEIQAKVVDFN 335

Query: 679 -DRGKIKLSMKVVDQNTGKP 697
            +  KI LSMK ++    KP
Sbjct: 336 GEEKKISLSMKALE--AAKP 353



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 6/90 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E++  I+    V    +G V  V DFGAF+   GA DGL+HIS++S  RV     V
Sbjct: 182 EKQKELMARIS----VGDTVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKV 236

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K GDTV V + D +   KI LS+K  ++N
Sbjct: 237 FKVGDTVKVLIKDING-DKIALSLKFPEEN 265


>gi|148378180|ref|YP_001252721.1| RNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931281|ref|YP_001382580.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153934599|ref|YP_001386133.1| RNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148287664|emb|CAL81729.1| putative RNA binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927325|gb|ABS32825.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930513|gb|ABS36012.1| RNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 718

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDKKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|160934395|ref|ZP_02081782.1| hypothetical protein CLOLEP_03268 [Clostridium leptum DSM 753]
 gi|156867068|gb|EDO60440.1| hypothetical protein CLOLEP_03268 [Clostridium leptum DSM 753]
          Length = 155

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V  +  FGAF+   G + G+VHIS+++   V +  D V E  TV VK+L  
Sbjct: 4   EVGMVLEGKVTGITKFGAFIELPGGKTGMVHISEVAPTFVKEIRDFVTENQTVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
            + GK+ LSMK
Sbjct: 64  SEDGKVSLSMK 74


>gi|121586614|ref|ZP_01676399.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121549173|gb|EAX59206.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|113461634|ref|YP_719703.1| transcription accessory protein [Haemophilus somnus 129PT]
 gi|112823677|gb|ABI25766.1| transcription accessory protein, RNA-binding protein containing S1
           domain [Haemophilus somnus 129PT]
          Length = 767

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD 
Sbjct: 642 VEEITDL-KAGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVENPHEVVKTGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+L+ D  R +I L+M+ +D+N  K
Sbjct: 701 VKVKVLEVDVARKRIGLTMR-LDENQPK 727


>gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
 gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
          Length = 382

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV+  G  DGLVHISQ+S +RV + SDV+ +G +V VK+L  D D 
Sbjct: 191 VVEGTVQRLTDFGAFVN-VGNVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADT 249

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 250 QRISLSIK 257



 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335

Query: 682 K-IKLSMK-VVDQNT 694
           K I LS+K  V++N 
Sbjct: 336 KRISLSIKEAVEENN 350


>gi|153814341|ref|ZP_01967009.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756]
 gi|317500055|ref|ZP_07958290.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087715|ref|ZP_08336641.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848737|gb|EDK25655.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756]
 gi|316898540|gb|EFV20576.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409696|gb|EGG89132.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ +G V  + ++GAF+       GLVH+SQ+S +RV   SDV+  GD V VK++  
Sbjct: 136 KIGEVLEGTVETLQNYGAFIKLDNGLSGLVHVSQISQKRVKLPSDVLNAGDKVTVKVIGI 195

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LSMK +++   +P
Sbjct: 196 KD-GKISLSMKALEEVKEEP 214


>gi|153802184|ref|ZP_01956770.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|254285911|ref|ZP_04960873.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262190725|ref|ZP_06048955.1| transcription accessory protein [Vibrio cholerae CT 5369-93]
 gi|124122258|gb|EAY41001.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|150424093|gb|EDN16032.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262033402|gb|EEY51910.1| transcription accessory protein [Vibrio cholerae CT 5369-93]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|153828359|ref|ZP_01981026.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876189|gb|EDL74324.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|153212528|ref|ZP_01948275.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124116399|gb|EAY35219.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|262392648|ref|YP_003284502.1| transcription accessory protein [Vibrio sp. Ex25]
 gi|262336242|gb|ACY50037.1| transcription accessory protein [Vibrio sp. Ex25]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMKDE 724


>gi|332654410|ref|ZP_08420153.1| general stress protein 13 [Ruminococcaceae bacterium D16]
 gi|332516374|gb|EGJ45980.1| general stress protein 13 [Ruminococcaceae bacterium D16]
          Length = 155

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V  +  FGAFV     R GLVHIS+++   V + SD +KEG  V VK++  D
Sbjct: 5   VGSILDGKVTGITKFGAFVALPEGRSGLVHISEIAYSYVNEVSDYLKEGQEVKVKVIGID 64

Query: 679 DRGKIKLSMKVVD 691
              +I LS+K V+
Sbjct: 65  QANRINLSIKKVN 77


>gi|323445709|gb|EGB02186.1| hypothetical protein AURANDRAFT_69118 [Aureococcus anophagefferens]
          Length = 268

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           V  +  G+V +V  +G FV    G   GLVH+S+LS ER A+  DVV  G  V VK+L  
Sbjct: 99  VGAVRAGEVTRVESYGCFVKLDDGGASGLVHVSELSHER-ARPEDVVAVGQPVLVKVLAP 157

Query: 678 DDRGKIKLSMKVVDQNTG 695
            + G+   S+K VDQ TG
Sbjct: 158 REPGRTSFSLKAVDQRTG 175


>gi|297203813|ref|ZP_06921210.1| transcriptional accessory protein [Streptomyces sviceus ATCC 29083]
 gi|297148507|gb|EDY55899.2| transcriptional accessory protein [Streptomyces sviceus ATCC 29083]
          Length = 795

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     + +G V  V  FGAF+     +DGL H+S LS   V    DVVK 
Sbjct: 654 KEGVEKISDL-SAGMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKP 712

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V VK+LD D  R +I L++++ D+   KP
Sbjct: 713 GDIVKVKVLDVDIPRKRISLTLRLDDEAQAKP 744


>gi|262402002|ref|ZP_06078567.1| transcription accessory protein [Vibrio sp. RC586]
 gi|262351974|gb|EEZ01105.1| transcription accessory protein [Vibrio sp. RC586]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|229513644|ref|ZP_04403108.1| transcription accessory protein [Vibrio cholerae TMA 21]
 gi|229349521|gb|EEO14477.1| transcription accessory protein [Vibrio cholerae TMA 21]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|255026108|ref|ZP_05298094.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-003]
          Length = 381

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           IT+  +V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV V
Sbjct: 266 ITEKAQVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325

Query: 673 KLLDFDDRGK-IKLSMK 688
           K+L+ ++  K + LS+K
Sbjct: 326 KVLEVNEADKRLSLSIK 342



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   +V++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256


>gi|170761041|ref|YP_001785504.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408030|gb|ACA56441.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 718

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ D  R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDRKRNRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 SLSMK 717


>gi|261211279|ref|ZP_05925568.1| transcription accessory protein [Vibrio sp. RC341]
 gi|260839780|gb|EEX66391.1| transcription accessory protein [Vibrio sp. RC341]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|258624644|ref|ZP_05719580.1| RNA-binding protein [Vibrio mimicus VM603]
 gi|258583108|gb|EEW07921.1| RNA-binding protein [Vibrio mimicus VM603]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|163802253|ref|ZP_02196148.1| hypothetical protein 1103602000603_AND4_17714 [Vibrio sp. AND4]
 gi|159174058|gb|EDP58868.1| hypothetical protein AND4_17714 [Vibrio sp. AND4]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLSDE 724


>gi|91224986|ref|ZP_01260245.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01]
 gi|91190232|gb|EAS76502.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMNDE 724


>gi|254225439|ref|ZP_04919050.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125622073|gb|EAZ50396.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|320033565|gb|EFW15512.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Coccidioides posadasii str. Silveira]
          Length = 1225

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P + K+Y G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD+V     V V
Sbjct: 255 PILYKVYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSRAQPVKV 314

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++      +I LSMK VDQ TG+ +V
Sbjct: 315 KVVSIQG-SRIGLSMKEVDQVTGRDLV 340


>gi|258620410|ref|ZP_05715448.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587289|gb|EEW12000.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|303312631|ref|XP_003066327.1| ATP-dependent helicase DHX8 , putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105989|gb|EER24182.1| ATP-dependent helicase DHX8 , putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1225

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P + K+Y G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD+V     V V
Sbjct: 255 PILYKVYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSRAQPVKV 314

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++      +I LSMK VDQ TG+ +V
Sbjct: 315 KVVSIQG-SRIGLSMKEVDQVTGRDLV 340


>gi|326202462|ref|ZP_08192331.1| RNA binding S1 domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325987580|gb|EGD48407.1| RNA binding S1 domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 143

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KI +G+V  +  FGAFV     + GLVHIS+++ E V   S  +KE   V VK+L  
Sbjct: 4   EVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQMVKVKILSI 63

Query: 678 DDRGKIKLSMK 688
           D  GK+ LS+K
Sbjct: 64  DTNGKVSLSIK 74


>gi|297581556|ref|ZP_06943479.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534394|gb|EFH73232.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|284049365|ref|YP_003399704.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
 gi|283953586|gb|ADB48389.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
          Length = 724

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  ++D+ +V  I +G +  V DFGAFV       GL+HIS +S +R+    DVV  
Sbjct: 639 RQNIVKLSDI-KVGTILRGTIRNVTDFGAFVDIGIKTAGLIHISHMSQKRIKHPLDVVSA 697

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           G+TV VK++  D+ RG+I L++   D
Sbjct: 698 GETVQVKVISVDEGRGRIGLALVTAD 723


>gi|16803977|ref|NP_465462.1| 30S ribosomal protein S1 [Listeria monocytogenes EGD-e]
 gi|224498612|ref|ZP_03666961.1| 30S ribosomal protein S1 [Listeria monocytogenes Finland 1988]
 gi|224501263|ref|ZP_03669570.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-561]
 gi|254827177|ref|ZP_05231864.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N3-165]
 gi|254831461|ref|ZP_05236116.1| 30S ribosomal protein S1 [Listeria monocytogenes 10403S]
 gi|254899365|ref|ZP_05259289.1| 30S ribosomal protein S1 [Listeria monocytogenes J0161]
 gi|254936823|ref|ZP_05268520.1| 30S ribosomal protein S1 [Listeria monocytogenes F6900]
 gi|255028957|ref|ZP_05300908.1| 30S ribosomal protein S1 [Listeria monocytogenes LO28]
 gi|284802383|ref|YP_003414248.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5578]
 gi|284995525|ref|YP_003417293.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5923]
 gi|16411391|emb|CAD00016.1| lmo1938 [Listeria monocytogenes EGD-e]
 gi|258599560|gb|EEW12885.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N3-165]
 gi|258609418|gb|EEW22026.1| 30S ribosomal protein S1 [Listeria monocytogenes F6900]
 gi|284057945|gb|ADB68886.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5578]
 gi|284060992|gb|ADB71931.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5923]
          Length = 381

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           IT+  +V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV V
Sbjct: 266 ITEKAQVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325

Query: 673 KLLDFDDRGK-IKLSMK 688
           K+L+ ++  K + LS+K
Sbjct: 326 KVLEVNEADKRLSLSIK 342



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   +V++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256


>gi|329894050|ref|ZP_08270035.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC3088]
 gi|328923222|gb|EGG30542.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC3088]
          Length = 771

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+ E   + +G V  V +FGAFV     +DGLVHIS L+ + V    DVVK 
Sbjct: 636 KEGVEKISDL-ESGMVLEGTVTNVTNFGAFVDVGVHQDGLVHISALADKFVKDPRDVVKA 694

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G  V VK+++ D+ R +I LSM++ D+
Sbjct: 695 GQVVKVKVMEVDEGRKRIGLSMRMSDE 721


>gi|323705558|ref|ZP_08117132.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535035|gb|EGB24812.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 140

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V+ + DFGAFV     + GLVHIS+++   V   ++ +KE D V VK+L  
Sbjct: 4   QVGEVVEGTVLNITDFGAFVQLPEGKTGLVHISEVANTYVKDINEFLKENDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DKGGRISLSIK 74


>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 491

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|262170352|ref|ZP_06038030.1| transcription accessory protein [Vibrio mimicus MB-451]
 gi|261891428|gb|EEY37414.1| transcription accessory protein [Vibrio mimicus MB-451]
          Length = 773

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  ++D+ EV  + +G V  V +FGAFV     +DGLVHIS L+   ++   +VVK G
Sbjct: 640 EGIHEVSDL-EVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIALSMRLNDE 724


>gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
          Length = 488

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+SQLS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G    VK++D D
Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|254228562|ref|ZP_04921987.1| S1 RNA binding domain protein [Vibrio sp. Ex25]
 gi|151938944|gb|EDN57777.1| S1 RNA binding domain protein [Vibrio sp. Ex25]
          Length = 608

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 475 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 533

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 534 DIVKVKVMEVDVQRKRIGLSMRMKDE 559


>gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 235

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +   V  ++   GS L   GDT+ I   ++    +E+    L GT +
Sbjct: 2   IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASV----EEKIPPFLKGTGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +   +   R  G      RL  R++   +  TA    T+ I  
Sbjct: 58  GWITAEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKP------VAGIAMGLVKDGDDFIILSDISG 481
           ++ ++DG +  A++ G+ +AL  A   I K       VA +++G+V  G ++++  D++ 
Sbjct: 118 DVIQADGGTRTASITGAFVALYRALEKIDKLDAVKNFVAAVSVGIV--GGEYLL--DLNY 173

Query: 482 DEDHLGHMDFKVAGTDSG 499
           +ED +  +D  +   D G
Sbjct: 174 EEDSIAEVDMNIVMNDVG 191


>gi|325982394|ref|YP_004294796.1| Tex-like protein [Nitrosomonas sp. AL212]
 gi|325531913|gb|ADZ26634.1| Tex-like protein [Nitrosomonas sp. AL212]
          Length = 740

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 13/160 (8%)

Query: 535 MSKVLSESRLQLGEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           + ++L++ +L + E      ++ AI P+Q  N    G   ++ I+++   K   D   T 
Sbjct: 588 VEQILNDIKLNISELIGNQAVLKAIHPEQYANA-QFGLLTVKDILKEL-EKPGRDPRSTF 645

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           + A        A +E I +I D+   + I +G +  V  FGAFV     +DGLVHIS LS
Sbjct: 646 RTA--------AFKEGIETIKDL-RSDMILEGVITNVAAFGAFVDIGVHQDGLVHISALS 696

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
            + V     +VK G  V VK+LD D+ R +I L+M++ D 
Sbjct: 697 DKFVKNPHAIVKVGQVVTVKVLDIDEKRKRIALTMQLSDH 736


>gi|304440184|ref|ZP_07400074.1| general stress protein 13 [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371233|gb|EFM24849.1| general stress protein 13 [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 125

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ +I  G V  VM FGAFV       GLVHIS++S   V   +D VK GD+V VK+L+ 
Sbjct: 3   EIGEIVDGTVKSVMKFGAFVELEDGSTGLVHISEVSNSFVKDINDYVKSGDSVKVKVLEI 62

Query: 678 DDRGKIKLSMK 688
           +D  KI LSMK
Sbjct: 63  ED-DKISLSMK 72


>gi|253987636|ref|YP_003038992.1| hypothetical protein PAU_00153 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779086|emb|CAQ82246.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 784

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS   VA    VVK GD V VK+L+ D +R
Sbjct: 662 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVADPHTVVKAGDIVKVKVLEVDLNR 721

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 722 KRIALTMRLDEQ 733


>gi|291009547|ref|ZP_06567520.1| RNA binding S1:resolvase, RNase H-like fold protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 754

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI----- 622
           +V+RG+  ++     +DD   +   +  LAE+E      R   ++ T    V KI     
Sbjct: 596 RVLRGLKPES----FVDDKFGLPTVTDILAELEKPGRDPRPTFKTATFADGVEKIGDLKP 651

Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
               +G V  V  FGAFV     +DGLVH+S +S   V+   DVVK GD V VK+LD D 
Sbjct: 652 GMRLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVSDPHDVVKSGDVVRVKVLDVDI 711

Query: 679 DRGKIKLSMKVVDQNTG 695
            R +I L++++ D+  G
Sbjct: 712 PRKRISLTLRLDDEAGG 728


>gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
 gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
          Length = 488

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+SQLS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G    VK++D D
Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|213692621|ref|YP_002323207.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 491

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|302390898|ref|YP_003826718.1| RNA binding S1 domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302202975|gb|ADL11653.1| RNA binding S1 domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 119

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 48/80 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V  + +FGAFV   G   GL+HIS+++   V   +D ++  + + VK++  
Sbjct: 4   EVGSVVEGKVSGITNFGAFVELSGGETGLIHISEIADTYVKDVNDYLEMNEEIEVKVISI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           DD GKI LS+K ++    KP
Sbjct: 64  DDDGKIGLSLKQLEGEDRKP 83


>gi|302866611|ref|YP_003835248.1| Tex-like protein-like [Micromonospora aurantiaca ATCC 27029]
 gi|302569470|gb|ADL45672.1| Tex-like protein-like [Micromonospora aurantiaca ATCC 27029]
          Length = 815

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 40/217 (18%)

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP---------- 559
            G++ENI+   L +   G      E+ KV    RL    F      + IP          
Sbjct: 517 AGLAENIV---LHRDANGPFRTRAELKKV---PRLGPKAFEQCAGFLRIPGGDDPLDSSS 570

Query: 560 --PDQ---IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA-- 606
             P+    +R ++   G+ +R ++ ++       A   +DD   +   +  LAE+E    
Sbjct: 571 VHPESYPVVRRILSSTGQDLRALIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGR 630

Query: 607 --REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             R   R+ T V  V KI         +G V  V  FGAFV     +DGLVH+S +S   
Sbjct: 631 DPRPEFRTATFVEGVEKISDLQPGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHTF 690

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           V    DVVK GD V V++LD D  R +I L++++ D+
Sbjct: 691 VKDPRDVVKSGDVVKVRVLDVDVPRKRISLTLRLDDE 727


>gi|323497028|ref|ZP_08102051.1| transcription accessory protein [Vibrio sinaloensis DSM 21326]
 gi|323317872|gb|EGA70860.1| transcription accessory protein [Vibrio sinaloensis DSM 21326]
          Length = 775

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   + +G V  V +FGAFV     +DGLVHIS L+ + V+   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKYVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724


>gi|160878183|ref|YP_001557151.1| RNA-binding S1 domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160426849|gb|ABX40412.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg]
          Length = 303

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A+E    I+ V +   +  G V K+M FGAFV       GLVHISQ+  +R+   ++V
Sbjct: 183 EEAKEKSHKISQVQK-GIVTTGIVDKLMPFGAFVSIGEGLSGLVHISQICGKRIKSPAEV 241

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +KEG  V VK+LD  D GKI LS+K V
Sbjct: 242 LKEGQEVKVKVLDVKD-GKISLSIKAV 267


>gi|331231447|ref|XP_003328387.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309307377|gb|EFP83968.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1205

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P + KIY G V  + DFG FV      G  +GLVH++ ++  RV   SD+V  G  V VK
Sbjct: 238 PVLYKIYDGTVASIKDFGCFVTLKGVSGKAEGLVHVNAIAAGRVNHPSDLVSRGQPVKVK 297

Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695
           ++      +I +SMK VDQNTG
Sbjct: 298 VVSIAGE-RIGISMKDVDQNTG 318


>gi|258544890|ref|ZP_05705124.1| histidine triad domain-containing protein [Cardiobacterium hominis
           ATCC 15826]
 gi|258519810|gb|EEV88669.1| histidine triad domain-containing protein [Cardiobacterium hominis
           ATCC 15826]
          Length = 769

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   I +G V  V +FGAFV     +DGLVHIS L+   V    D+VK G
Sbjct: 648 EGVHEISDL-QPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALADRYVQDPRDIVKAG 706

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK+L+ D +R +I L+M++ D  T 
Sbjct: 707 DVVKVKVLEVDAERKRIALTMRLDDDATA 735


>gi|217970449|ref|YP_002355683.1| RNA binding S1 domain protein [Thauera sp. MZ1T]
 gi|217507776|gb|ACK54787.1| RNA binding S1 domain protein [Thauera sp. MZ1T]
          Length = 795

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + ++ D+ E   + +G V  V +FGAFV     +DGLVHIS LS   V     VVK 
Sbjct: 638 REGVETLKDL-EPGMLLEGVVTNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKA 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V VK+L+ D  R +I L+M++ D+ T K
Sbjct: 697 GQVVKVKVLEVDIPRHRIALTMRLGDEVTAK 727


>gi|163816329|ref|ZP_02207695.1| hypothetical protein COPEUT_02516 [Coprococcus eutactus ATCC 27759]
 gi|158448326|gb|EDP25321.1| hypothetical protein COPEUT_02516 [Coprococcus eutactus ATCC 27759]
          Length = 715

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHIS++S + +    DVV  GD V VK++  D ++
Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHPLDVVSVGDIVQVKVIGIDLNK 704

Query: 681 GKIKLSMKVVD 691
            +I+LSMK ++
Sbjct: 705 KRIQLSMKGIN 715


>gi|310287294|ref|YP_003938552.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
 gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
          Length = 490

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKSGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|269965880|ref|ZP_06179973.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829433|gb|EEZ83674.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 787

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 654 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 712

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 713 DIVKVKVMEVDVQRKRIGLSMRMNDE 738


>gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
 gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
          Length = 403

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  ++DFGAFV   G  DGLVHIS+LS   V   S+VVK GD V V++LD D  R +
Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDLQRER 269

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   Q T  P V
Sbjct: 270 ISLGLK---QTTEDPWV 283



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V K + FGAFV      +GLVHIS+++ + +   + VV  GD V VK+++ +
Sbjct: 291 VGSIIDGKVTKTVPFGAFVELGPNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEIN 350

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +R +I LSMK   ++ G
Sbjct: 351 TERRRISLSMKAAAEDLG 368


>gi|268592315|ref|ZP_06126536.1| protein YhgF [Providencia rettgeri DSM 1131]
 gi|291312098|gb|EFE52551.1| protein YhgF [Providencia rettgeri DSM 1131]
          Length = 776

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+LD D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVLDVDIAR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|71019705|ref|XP_760083.1| hypothetical protein UM03936.1 [Ustilago maydis 521]
 gi|46099848|gb|EAK85081.1| hypothetical protein UM03936.1 [Ustilago maydis 521]
          Length = 1201

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTV 670
           D P++ KIY+GQV  + DFG FV   G R   +G+VHI  ++   RV   SD++  G  V
Sbjct: 217 DRPQLYKIYEGQVSNMRDFGVFVSLEGLRGRFEGMVHIGSIAAGTRVNHPSDLLSRGQRV 276

Query: 671 WVKLLD-FDDRGKIKLSMKVVDQNTGK 696
            VK++    DR  I LSMK VDQ TG+
Sbjct: 277 KVKVMSVVGDR--IGLSMKDVDQATGR 301


>gi|225377348|ref|ZP_03754569.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
           16841]
 gi|225210879|gb|EEG93233.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
           16841]
          Length = 300

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +M +GAF++      GLVHISQ+   R+ K S+V+KEG  V  K+L+ +D  
Sbjct: 197 VMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKAKVLNTNDN- 255

Query: 682 KIKLSMKVVDQ 692
           KI LSMK +++
Sbjct: 256 KISLSMKALEE 266


>gi|220930899|ref|YP_002507807.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
 gi|219992209|gb|ACL68812.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
          Length = 722

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V+DFGAFV      DGLVHIS++S + V     VV+ GDTV VK+L+ 
Sbjct: 650 EAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEV 709

Query: 678 DD-RGKIKLSMKV 689
           D+ R +I LSMK+
Sbjct: 710 DERRNRISLSMKL 722


>gi|134101848|ref|YP_001107509.1| RNA binding S1:resolvase, RNase H-like fold [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914471|emb|CAM04584.1| RNA binding S1:resolvase, RNase H-like fold [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 796

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI----- 622
           +V+RG+  ++     +DD   +   +  LAE+E      R   ++ T    V KI     
Sbjct: 596 RVLRGLKPES----FVDDKFGLPTVTDILAELEKPGRDPRPTFKTATFADGVEKIGDLKP 651

Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
               +G V  V  FGAFV     +DGLVH+S +S   V+   DVVK GD V VK+LD D 
Sbjct: 652 GMRLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVSDPHDVVKSGDVVRVKVLDVDI 711

Query: 679 DRGKIKLSMKVVDQNTG 695
            R +I L++++ D+  G
Sbjct: 712 PRKRISLTLRLDDEAGG 728


>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 411

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  V DFGAFV   GA DGLVH+S+LS  RV   S+++K GD V V +L  D+ R
Sbjct: 237 VREGVVTSVCDFGAFVDIGGA-DGLVHLSELSWSRVKHPSEILKPGDKVQVYVLSIDNER 295

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 296 KRIALSLK 303



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++ +G V ++  FGAFV      +GL+H+S++   RV    DV++EGD V  +++  D
Sbjct: 319 IGQMVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDAVQARIIRID 378

Query: 679 D-RGKIKLSMK 688
             R +I LSM+
Sbjct: 379 PARKRIGLSMR 389


>gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
 gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
          Length = 248

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 28/254 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 YN LP +T      E++++    R  EI   RL  RA+   +   A    T+ I
Sbjct: 57  GWITAEYNMLPRSTQSRKQREINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V  G++ +
Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIV--GEEKV 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +EDH+  +D  V  T+ G    +Q   + G  S   +   L  A++G   ++ 
Sbjct: 173 L--DLCYEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQ 230

Query: 534 EMSKVLSESRLQLG 547
                L    L +G
Sbjct: 231 AQKDALKTDSLWIG 244


>gi|293596578|ref|ZP_05262508.2| 30S ribosomal protein S1 [Listeria monocytogenes J2818]
 gi|293590480|gb|EFF98814.1| 30S ribosomal protein S1 [Listeria monocytogenes J2818]
          Length = 439

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           IT+  +V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV V
Sbjct: 324 ITEKAQVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 383

Query: 673 KLLDFDDRGK-IKLSMK 688
           K+L+ ++  K + LS+K
Sbjct: 384 KVLEVNEADKRLSLSIK 400



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 216 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 273

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   +V++EG  V VK++  D +  +I LS+K
Sbjct: 274 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 314


>gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
 gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
          Length = 382

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV+  G  DGLVHISQ+S +RV + SDV+ +G +V VK+L  D D 
Sbjct: 191 VVEGTVQRLTDFGAFVN-VGDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADT 249

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 250 QRISLSIK 257



 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335

Query: 682 K-IKLSMK-VVDQNT 694
           K I LS+K  V++N 
Sbjct: 336 KRISLSIKEAVEENN 350


>gi|328462395|gb|EGF34445.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus MTCC 5462]
          Length = 121

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 6/89 (6%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           ++ EA +E+   I    +   + +G+V ++ +FGAFV   G  DGLVH+S++S + V K 
Sbjct: 15  SKAEARKEIFAKI----QPGDVVEGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKP 69

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           SDV+K G  + VK+L+ D DR +I LS+K
Sbjct: 70  SDVLKVGQEIKVKVLNVDPDRNRISLSIK 98


>gi|291460402|ref|ZP_06599792.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416969|gb|EFE90688.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 254

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V  + D+GAFV       GL+H+SQ+S  R+   +DV+KEG +V VK+   
Sbjct: 142 EVGSVLEGKVESLKDYGAFVDIGDGVTGLLHVSQISQRRIKTPADVLKEGQSVTVKITAM 201

Query: 678 DDRGKIKLSMK 688
            D G+I LSMK
Sbjct: 202 KD-GRISLSMK 211


>gi|15603313|ref|NP_246387.1| hypothetical protein PM1448 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721827|gb|AAK03532.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 791

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD 
Sbjct: 661 VEDINDL-KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDI 719

Query: 670 VWVKLLDFD-DRGKIKLSMKV----VDQNTGK 696
           V VK+L+ D  R +I L+M++    VD+N  K
Sbjct: 720 VKVKVLEVDVPRKRIALTMRLEEKPVDKNVAK 751


>gi|156972940|ref|YP_001443847.1| transcriptional accessory protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524534|gb|ABU69620.1| hypothetical protein VIBHAR_00618 [Vibrio harveyi ATCC BAA-1116]
          Length = 766

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 633 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 691

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 692 DIVKVKVMEVDVQRKRIGLSMRLNDE 717


>gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saburreum DSM 3986]
 gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saburreum DSM 3986]
          Length = 368

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + KG+V ++ DFGAFV      D L+H+SQ+S + V K SDV+K GD V   +++F++  
Sbjct: 279 VVKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPE 338

Query: 681 GKIKLSMKVVDQ 692
            KI LS+K + Q
Sbjct: 339 KKISLSIKALTQ 350



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  V DFGAFV   GA DGL+HIS++S  RV     V K G+ V   + D     
Sbjct: 196 VIEGTVKNVTDFGAFVDLGGA-DGLLHISEMSWGRVENPKKVFKSGEKVTAFIKDISGE- 253

Query: 682 KIKLSMKVVDQN 693
           KI LSMK  DQN
Sbjct: 254 KIALSMKFPDQN 265


>gi|291460381|ref|ZP_06599771.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416948|gb|EFE90667.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 374

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G+V ++ DFGAF+      D L+H+SQ+S E V K SDV+  G  +  K++D D +
Sbjct: 275 QIVRGRVARMTDFGAFIELDKGIDALLHVSQISREHVNKPSDVLSVGQEIEAKVVDLDVN 334

Query: 680 RGKIKLSMKVVDQNTGK 696
             KI LSMKV+    G+
Sbjct: 335 NHKISLSMKVLLPEEGR 351



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V  + DFGAF+   GA DGL+HIS++S  R+     + K G  V V + + +   
Sbjct: 193 VRTGVVKNLTDFGAFIDLGGA-DGLLHISEMSWGRIENPKKLFKPGQEVKVLVKEINGE- 250

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+ K  D+N  K
Sbjct: 251 RIALTRKFPDENPWK 265


>gi|253681777|ref|ZP_04862574.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum D str. 1873]
 gi|253561489|gb|EES90941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum D str. 1873]
          Length = 633

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 9/88 (10%)

Query: 610 IRSITDVPEVN--------KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           I+ +TD P  N         I  G+VV+  DFGAFV      DGLVH+S++S +R+ K S
Sbjct: 543 IKKLTDDPWTNIEEKYPIGSIVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPS 602

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           DV+K  + V  K+L+ +  GK + LS+K
Sbjct: 603 DVLKLNEEVKAKILNVNKDGKRLSLSIK 630



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 13/143 (9%)

Query: 549 FTPRVEIMAIPPDQIRNVIG--MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           F P   +     + + N IG  M  K+I   V +   K+         +AS     I+A 
Sbjct: 412 FVPASHVELFHVNDLSNYIGQDMQVKIIEFKVNKRVTKI---------VASRRELLIKAQ 462

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E      +  + +++ +G++ ++  FGAFV   G  DGL+H+S++S  RV K  DV+K 
Sbjct: 463 AEKEEEAWNTLKKDEVIEGEIRRLTSFGAFVDVNGI-DGLLHVSEISWGRVEKPEDVLKV 521

Query: 667 GDTVWVKLLDFDDRGKIKLSMKV 689
           G+ V V +LD D   K KLS+ +
Sbjct: 522 GEKVKVFILDIDKENK-KLSLSI 543


>gi|281212246|gb|EFA86406.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 1232

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P VN IY G+V  + D+G FV      G R+GLVH+SQ+ + +V   SDVVK    V   
Sbjct: 289 PGVNSIYSGKVTGINDYGFFVSLDGIVGKREGLVHVSQIRSTKVQHPSDVVKRNQVV-KV 347

Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695
            +      K+ LSMK VDQ TG
Sbjct: 348 KVLSVVGSKVSLSMKDVDQQTG 369


>gi|90023181|ref|YP_529008.1| general secretion pathway protein J [Saccharophagus degradans 2-40]
 gi|89952781|gb|ABD82796.1| RNA binding S1 [Saccharophagus degradans 2-40]
          Length = 772

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + +I D+ E   I +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD 
Sbjct: 641 VETIKDL-EPGMILEGTVTNVTNFGAFVDVGVHQDGLVHISALSNTFVKDPREVVKAGDI 699

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN----TGKP 697
           V VK+++ D  R +I +SM++ D+     TG+P
Sbjct: 700 VKVKVMEVDVPRKRIAMSMRMDDEPGEKVTGRP 732


>gi|300853471|ref|YP_003778455.1| transcriptional accessory protein [Clostridium ljungdahlii DSM
           13528]
 gi|300433586|gb|ADK13353.1| transcriptional accessory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 721

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS + V    DVV+ GD V V +L+ D+ R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVQVGDIVQVTVLEVDEKRKRI 712

Query: 684 KLSMKVVD 691
            LSMK  D
Sbjct: 713 SLSMKSSD 720


>gi|300743754|ref|ZP_07072774.1| putative transcriptional accessory protein [Rothia dentocariosa
           M567]
 gi|300380115|gb|EFJ76678.1| putative transcriptional accessory protein [Rothia dentocariosa
           M567]
          Length = 811

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  V  FGAFV     +DGL+HISQ+S E VA   D+V+ GD V V++++ D
Sbjct: 721 VGMVLEGTVSNVAAFGAFVDIGVHQDGLIHISQMSREYVANPHDIVRSGDIVTVRVVEVD 780

Query: 679 -DRGKIKLSMKVVDQNTGKP 697
             R +I LS+ V   + G+P
Sbjct: 781 ASRRRISLSLLV---DAGEP 797


>gi|153956208|ref|YP_001396973.1| Tex [Clostridium kluyveri DSM 555]
 gi|219856533|ref|YP_002473655.1| hypothetical protein CKR_3190 [Clostridium kluyveri NBRC 12016]
 gi|146349066|gb|EDK35602.1| Tex [Clostridium kluyveri DSM 555]
 gi|219570257|dbj|BAH08241.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 717

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS + V    DVVK GD V V +L+ D+ R +I
Sbjct: 653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVKVGDIVNVTVLEVDEKRKRI 712

Query: 684 KLSMK 688
            LSMK
Sbjct: 713 ALSMK 717


>gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
          Length = 516

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+SQLS + +   S+VV  GD V V++LD D D
Sbjct: 236 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLD 294

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 295 RERVSLSLKATQEDPWR 311



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G    VK++D D
Sbjct: 319 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 378

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 379 LERRRISLSLKQADED 394


>gi|315924878|ref|ZP_07921095.1| YhgF like protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621777|gb|EFV01741.1| YhgF like protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 716

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG V  V+DFGAFV     +DGLVHISQ+S   V   SDV+  GD V VK+L  D  R +
Sbjct: 650 KGTVRNVVDFGAFVDIGVHQDGLVHISQISDRYVKHPSDVLSVGDVVTVKVLSVDKPRSR 709

Query: 683 IKLSM 687
           I L+M
Sbjct: 710 IALTM 714


>gi|219125585|ref|XP_002183057.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405332|gb|EEC45275.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 325

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 13/90 (14%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +P    I  G++V++  +GAFV    C AR GL+HISQ++  R+ K  D +   D VWVK
Sbjct: 4   LPSEGSIVCGEIVRIEPYGAFVQLEECRAR-GLLHISQIANMRLEKVEDALSMNDRVWVK 62

Query: 674 LLDF--DD--------RGKIKLSMKVVDQN 693
           +L+   DD        R KIKL+MK V Q+
Sbjct: 63  VLEVVPDDNPDMSRPQRFKIKLTMKNVAQD 92


>gi|167759011|ref|ZP_02431138.1| hypothetical protein CLOSCI_01358 [Clostridium scindens ATCC 35704]
 gi|167663418|gb|EDS07548.1| hypothetical protein CLOSCI_01358 [Clostridium scindens ATCC 35704]
          Length = 373

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V K+ +G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D +
Sbjct: 276 VGKVIEGKVARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLSVGQVITAKIVDLN 335

Query: 679 D-RGKIKLSMKVVD 691
           +   KI LSMK ++
Sbjct: 336 ESEKKISLSMKALE 349



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAF+   G  DGL+HIS++S  RV     V + G+ V V + D +D  KI
Sbjct: 198 EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGEKVEVLIKDINDT-KI 255

Query: 684 KLSMKVVDQN 693
            LS+K  + N
Sbjct: 256 ALSLKFPETN 265


>gi|332982232|ref|YP_004463673.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
           50-1 BON]
 gi|332699910|gb|AEE96851.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
           50-1 BON]
          Length = 718

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D  +V  I +G+VV +  FGAFV      +GLVHISQ++ +R+ K  DV+K GD V VK+
Sbjct: 593 DKYKVGDIVRGKVVSITSFGAFVELEPGLEGLVHISQVANKRINKVEDVLKVGDEVQVKI 652

Query: 675 LDF-DDRGKIKLSMK 688
           +D   +  +I LS+K
Sbjct: 653 MDVRPEEHRISLSIK 667



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G+V  V DFGAFV   G  DGL+HI  LS  R+   S+VVK GDTV V +L  D   K K
Sbjct: 518 GKVKNVTDFGAFVDIGGV-DGLIHIGDLSWGRIKHPSEVVKPGDTVDVIVLSADKENK-K 575

Query: 685 LSM 687
           LS+
Sbjct: 576 LSL 578


>gi|311113006|ref|YP_003984228.1| transcription accessory protein [Rothia dentocariosa ATCC 17931]
 gi|310944500|gb|ADP40794.1| transcription accessory protein [Rothia dentocariosa ATCC 17931]
          Length = 811

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  V  FGAFV     +DGL+HISQ+S E VA   D+V+ GD V V++++ D
Sbjct: 721 VGMVLEGTVSNVAAFGAFVDIGVHQDGLIHISQMSREYVANPHDIVRSGDIVTVRVVEVD 780

Query: 679 -DRGKIKLSMKVVDQNTGKP 697
             R +I LS+ V   + G+P
Sbjct: 781 ASRRRISLSLLV---DAGEP 797


>gi|255016643|ref|ZP_05288769.1| hypothetical protein LmonF_00096 [Listeria monocytogenes FSL
           F2-515]
          Length = 115

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  GDDGKIGLSIRKAVDR 79


>gi|200388687|ref|ZP_03215299.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605785|gb|EDZ04330.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 776

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|16799327|ref|NP_469595.1| hypothetical protein lin0250 [Listeria innocua Clip11262]
 gi|46906450|ref|YP_012839.1| hypothetical protein LMOf2365_0229 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093160|ref|ZP_00230935.1| RNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|226222847|ref|YP_002756954.1| hypothetical protein Lm4b_00216 [Listeria monocytogenes Clip81459]
 gi|254825868|ref|ZP_05230869.1| RNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|254854448|ref|ZP_05243796.1| RNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|254933058|ref|ZP_05266417.1| RNA-binding protein [Listeria monocytogenes HPB2262]
 gi|254994426|ref|ZP_05276616.1| hypothetical protein LmonocytoFSL_16697 [Listeria monocytogenes FSL
           J2-064]
 gi|255521744|ref|ZP_05388981.1| hypothetical protein LmonocFSL_11052 [Listeria monocytogenes FSL
           J1-175]
 gi|289433573|ref|YP_003463445.1| RNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|300766351|ref|ZP_07076310.1| RNA-binding protein [Listeria monocytogenes FSL N1-017]
 gi|315301120|ref|ZP_07872407.1| RNA-binding S1 domain-containing protein [Listeria ivanovii FSL
           F6-596]
 gi|21667248|gb|AAM74000.1|AF467001_1 YabR-like protein [Listeria monocytogenes]
 gi|16412679|emb|CAC95483.1| polyribonucleotide nucleotidyltransferase domain present [Listeria
           innocua Clip11262]
 gi|46879714|gb|AAT03016.1| RNA-binding protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018467|gb|EAL09225.1| RNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|225875309|emb|CAS04006.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607848|gb|EEW20456.1| RNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|289169817|emb|CBH26355.1| RNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|293584616|gb|EFF96648.1| RNA-binding protein [Listeria monocytogenes HPB2262]
 gi|293595107|gb|EFG02868.1| RNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|300512950|gb|EFK40038.1| RNA-binding protein [Listeria monocytogenes FSL N1-017]
 gi|313630509|gb|EFR98355.1| RNA-binding S1 domain-containing protein [Listeria ivanovii FSL
           F6-596]
 gi|313635128|gb|EFS01460.1| RNA-binding S1 domain-containing protein [Listeria seeligeri FSL
           N1-067]
 gi|313639794|gb|EFS04532.1| RNA-binding S1 domain-containing protein [Listeria seeligeri FSL
           S4-171]
 gi|328467974|gb|EGF39001.1| hypothetical protein LM1816_04868 [Listeria monocytogenes 1816]
 gi|328469745|gb|EGF40667.1| hypothetical protein LM220_06692 [Listeria monocytogenes 220]
 gi|332310627|gb|EGJ23722.1| S1 RNA binding domain protein [Listeria monocytogenes str. Scott A]
          Length = 142

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  GDDGKIGLSIRKAVDR 79


>gi|220930443|ref|YP_002507352.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
 gi|220000771|gb|ACL77372.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
          Length = 144

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KI +G+V  +  FGAFV     + GLVHIS+++ E V   S  +KE   V VK+L  
Sbjct: 4   EVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQIVKVKILSV 63

Query: 678 DDRGKIKLSMK 688
           D  GK+ LS+K
Sbjct: 64  DTNGKVSLSIK 74


>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
           27678]
 gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
 gi|171278819|gb|EDT46480.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
           27678]
 gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
          Length = 490

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
 gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
          Length = 490

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N++ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V+
Sbjct: 203 LNQLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVE 261

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 262 VLDVDMDRERVSLSLKATQED 282



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            DR +I LS+K  +++
Sbjct: 353 LDRRRISLSLKQANED 368


>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|240146571|ref|ZP_04745172.1| protein YhgF [Roseburia intestinalis L1-82]
 gi|257201302|gb|EEU99586.1| protein YhgF [Roseburia intestinalis L1-82]
 gi|291540980|emb|CBL14091.1| Transcriptional accessory protein [Roseburia intestinalis XB6B4]
          Length = 752

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHISQ+S   +    +VV  GD V VK+LD D  +
Sbjct: 682 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKVLDVDLKK 741

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 742 QRIALTMKI 750


>gi|224500331|ref|ZP_03668680.1| hypothetical protein LmonF1_11944 [Listeria monocytogenes Finland
           1988]
          Length = 142

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  GDDGKIGLSIRKAVDR 79


>gi|224282840|ref|ZP_03646162.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1P RpsA [Bifidobacterium bifidum PRL2010]
 gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
 gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
          Length = 490

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|291059681|gb|ADD72416.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 829

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN + KG+V K+ DFGAF+      +GL HIS+ S  ++ +K SD+VK GD V   +L +
Sbjct: 544 VNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGY 603

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D   G++ L +K V  N  + I
Sbjct: 604 DIQAGRVSLGLKQVTANPWEEI 625



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E AR+      +   +     G V     FGAF+   G  DGL+H++ +S   VA+  + 
Sbjct: 444 ERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREF 502

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMK 688
           VK+G T+ +K++  D   K I LS+K
Sbjct: 503 VKKGQTIELKVIRLDQAEKRINLSLK 528


>gi|16802264|ref|NP_463749.1| hypothetical protein lmo0218 [Listeria monocytogenes EGD-e]
 gi|47097257|ref|ZP_00234817.1| RNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|116871601|ref|YP_848382.1| hypothetical protein lwe0181 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|217965696|ref|YP_002351374.1| S1 family RNA-binding protein [Listeria monocytogenes HCC23]
 gi|224503462|ref|ZP_03671769.1| hypothetical protein LmonFR_13292 [Listeria monocytogenes FSL
           R2-561]
 gi|254829309|ref|ZP_05233996.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|254832461|ref|ZP_05237116.1| hypothetical protein Lmon1_13986 [Listeria monocytogenes 10403S]
 gi|254900997|ref|ZP_05260921.1| hypothetical protein LmonJ_14323 [Listeria monocytogenes J0161]
 gi|254913935|ref|ZP_05263947.1| RNA-binding protein [Listeria monocytogenes J2818]
 gi|254938275|ref|ZP_05269972.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|255025714|ref|ZP_05297700.1| hypothetical protein LmonocytFSL_04095 [Listeria monocytogenes FSL
           J2-003]
 gi|255030075|ref|ZP_05302026.1| hypothetical protein LmonL_15199 [Listeria monocytogenes LO28]
 gi|284803043|ref|YP_003414908.1| hypothetical protein LM5578_2800 [Listeria monocytogenes 08-5578]
 gi|284996184|ref|YP_003417952.1| hypothetical protein LM5923_2749 [Listeria monocytogenes 08-5923]
 gi|290894274|ref|ZP_06557241.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|16409583|emb|CAD00745.1| polyribonucleotide nucleotidyltransferase domain present [Listeria
           monocytogenes EGD-e]
 gi|47014357|gb|EAL05330.1| RNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|116740479|emb|CAK19599.1| RNA binding domain protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|217334966|gb|ACK40760.1| S1 family RNA-binding protein [Listeria monocytogenes HCC23]
 gi|258601722|gb|EEW15047.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|258610885|gb|EEW23493.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284058605|gb|ADB69546.1| hypothetical protein LM5578_2800 [Listeria monocytogenes 08-5578]
 gi|284061651|gb|ADB72590.1| hypothetical protein LM5923_2749 [Listeria monocytogenes 08-5923]
 gi|290556158|gb|EFD89705.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|293591953|gb|EFG00288.1| RNA-binding protein [Listeria monocytogenes J2818]
 gi|307569757|emb|CAR82936.1| S1 RNA-binding domain protein [Listeria monocytogenes L99]
 gi|313611246|gb|EFR86026.1| RNA-binding S1 domain-containing protein [Listeria monocytogenes
           FSL F2-208]
          Length = 142

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  GDDGKIGLSIRKAVDR 79


>gi|261250556|ref|ZP_05943131.1| transcription accessory protein [Vibrio orientalis CIP 102891]
 gi|260939125|gb|EEX95112.1| transcription accessory protein [Vibrio orientalis CIP 102891]
          Length = 773

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLKDE 724


>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|188580003|ref|YP_001923448.1| RNA binding S1 domain protein [Methylobacterium populi BJ001]
 gi|179343501|gb|ACB78913.1| RNA binding S1 domain protein [Methylobacterium populi BJ001]
          Length = 773

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R +
Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLAVDVPRKR 714

Query: 683 IKLSMKVVDQNTGKP 697
           I LSM++ D   G P
Sbjct: 715 ISLSMRLDDPIDGTP 729


>gi|169632219|ref|YP_001705955.1| hypothetical protein ABSDF0251 [Acinetobacter baumannii SDF]
 gi|169151011|emb|CAO99648.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 794

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  IDD   +      LAE+E      R  
Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFIDDKFGLPTIQDVLAELEKPGRDPRPE 635

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724


>gi|291535706|emb|CBL08818.1| Transcriptional accessory protein [Roseburia intestinalis M50/1]
          Length = 752

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHISQ+S   +    +VV  GD V VK+LD D  +
Sbjct: 682 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKVLDVDLKK 741

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 742 QRIALTMKI 750


>gi|290473267|ref|YP_003466133.1| protein yhgF [Xenorhabdus bovienii SS-2004]
 gi|289172566|emb|CBJ79335.1| Protein yhgF [Xenorhabdus bovienii SS-2004]
          Length = 780

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK++D D +R
Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVENPHTVVKTGDIVKVKVMDIDLNR 711

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ +Q    P
Sbjct: 712 KRIGLTMRLDEQPGEAP 728


>gi|256375896|ref|YP_003099556.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
 gi|255920199|gb|ACU35710.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
          Length = 785

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 648 VLEGVVTNVAAFGAFVDVGVHQDGLVHISALSDTYVKDPRDVVKSGDVVRVKVLEVDIPR 707

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L++++ D+   KP
Sbjct: 708 KRIGLTLRLTDEPGRKP 724


>gi|299820647|ref|ZP_07052536.1| RNA-binding protein [Listeria grayi DSM 20601]
 gi|299817668|gb|EFI84903.1| RNA-binding protein [Listeria grayi DSM 20601]
          Length = 141

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKVQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDAVTVKVMNI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  GDDGKIGLSIRKAVDR 79


>gi|125975144|ref|YP_001039054.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|256003200|ref|ZP_05428192.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|281418435|ref|ZP_06249454.1| RNA binding S1 domain protein [Clostridium thermocellum JW20]
 gi|125715369|gb|ABN53861.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|255992891|gb|EEU02981.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|281407519|gb|EFB37778.1| RNA binding S1 domain protein [Clostridium thermocellum JW20]
 gi|316939311|gb|ADU73345.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 1313]
          Length = 140

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KI +G+V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK++  
Sbjct: 4   EVGKIVEGRVSGITSFGAFVELSNGQTGLVHISEVADEYVKDIKSHLKENQTVKVKIISV 63

Query: 678 DDRGKIKLSMK 688
           D  GKI LS+K
Sbjct: 64  DKNGKISLSIK 74


>gi|331085544|ref|ZP_08334628.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407431|gb|EGG86933.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 222

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A E  + + ++P V  I  G V  +  +GAF+       GLVH+SQ+  +R+   +DV
Sbjct: 106 EQAAERAKKVQEIP-VGSILSGTVDSLQSYGAFILLENGLSGLVHVSQICEKRIKSPADV 164

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +K G+ V VK++   D GKI LSMK +
Sbjct: 165 LKTGEEVQVKVIGIKD-GKISLSMKAL 190


>gi|313625437|gb|EFR95194.1| RNA-binding S1 domain-containing protein [Listeria innocua FSL
           J1-023]
          Length = 142

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  GDDGKIGLSIRKAVDR 79


>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 240

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E +   D 
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEAKGRRD- 63

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                R      Y+    +TGE  R     R+    G   R+     +         + I
Sbjct: 64  -----RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 118

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+ 
Sbjct: 119 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DSTALADLSHVEEA 174

Query: 486 LG--HMDFKVAGTDSGITAMQMDMKI 509
            G   +   +      I  ++MD ++
Sbjct: 175 AGGPQLALALLPASGQIALLEMDARL 200


>gi|269959402|ref|ZP_06173785.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835839|gb|EEZ89915.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 773

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMNDE 724


>gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025513|ref|YP_001933285.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum SS14]
 gi|3322552|gb|AAC65266.1| ribosomal protein S1 (rpsA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018088|gb|ACD70706.1| ribosomal protein S1 [Treponema pallidum subsp. pallidum SS14]
          Length = 863

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN + KG+V K+ DFGAF+      +GL HIS+ S  ++ +K SD+VK GD V   +L +
Sbjct: 578 VNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGY 637

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D   G++ L +K V  N  + I
Sbjct: 638 DIQAGRVSLGLKQVTANPWEEI 659



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E AR+      +   +     G V     FGAF+   G  DGL+H++ +S   VA+  + 
Sbjct: 478 ERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREF 536

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMK 688
           VK+G T+ +K++  D   K I LS+K
Sbjct: 537 VKKGQTIELKVIRLDQAEKRINLSLK 562


>gi|238916339|ref|YP_002929856.1| hypothetical protein EUBELI_00373 [Eubacterium eligens ATCC 27750]
 gi|238871699|gb|ACR71409.1| Hypothetical protein EUBELI_00373 [Eubacterium eligens ATCC 27750]
          Length = 763

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I KG V  V+DFGAFV     +DGLVHISQ+ ST+RV    DVV  GD V V+++D D  
Sbjct: 646 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDIP 705

Query: 680 RGKIKLSM 687
           + +I LSM
Sbjct: 706 KARISLSM 713


>gi|153833924|ref|ZP_01986591.1| protein YhgF [Vibrio harveyi HY01]
 gi|148869762|gb|EDL68739.1| protein YhgF [Vibrio harveyi HY01]
          Length = 773

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRMNDE 724


>gi|121594077|ref|YP_985973.1| RNA-binding S1 domain-containing protein [Acidovorax sp. JS42]
 gi|120606157|gb|ABM41897.1| RNA binding S1 domain protein [Acidovorax sp. JS42]
          Length = 798

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK G
Sbjct: 668 EGVEDIADLRE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREVVKTG 726

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V VK+L+ D  R +I LSMK+
Sbjct: 727 DIVKVKVLEVDAARKRISLSMKL 749


>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
           L2-32]
 gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084010|gb|EDN83055.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
           L2-32]
          Length = 490

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282


>gi|118579778|ref|YP_901028.1| ribosomal protein S1 [Pelobacter propionicus DSM 2379]
 gi|118502488|gb|ABK98970.1| SSU ribosomal protein S1P [Pelobacter propionicus DSM 2379]
          Length = 579

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  V ++GAFV   G  DGL+H+S LS  RV K +DV+K G TV  K+L F
Sbjct: 210 EEGQIVEGVVKNVTEYGAFVDLGGV-DGLLHVSDLSWGRVGKPADVLKPGQTVTAKVLKF 268

Query: 678 D-DRGKIKLSMK 688
           D  +GKI L +K
Sbjct: 269 DRTKGKISLGVK 280



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+ ++I  G+VV +M++GAFV      +GL+H+S++S T R+ + +DV+  GD V   +L
Sbjct: 295 PQESRI-SGRVVSLMEYGAFVELEPGVEGLIHVSEMSWTRRIRRAADVLSVGDEVEAVVL 353

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D +  KI L +K   +N
Sbjct: 354 GIDMNNRKISLGLKQAGEN 372



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + DFG FV      +GL+H+S+LS E+V       + GDT+   +L  D +  +I
Sbjct: 476 GKVTSLTDFGVFVELEEGVEGLIHVSELSREKVPTAKTFAEVGDTLEAIVLSCDPKERRI 535

Query: 684 KLSMKVV 690
            LS+K +
Sbjct: 536 SLSIKAM 542



 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +GQ+  + DFG F+      DGLVH+S +S T+R+    DV  +GD V   +L  D
Sbjct: 388 EGQIKNMTDFGMFIGIEDGIDGLVHVSDISWTKRIKHPGDVYAKGDIVQAVVLKVD 443


>gi|319939079|ref|ZP_08013443.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
 gi|319812129|gb|EFW08395.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
          Length = 399

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G  V VK+LD + D 
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
 gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
          Length = 441

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE  AARE   S     +   + +G V  + DFGAF+   G  DGL+HIS++S  R+   
Sbjct: 215 AERTAARERFWSTV---QEGDVLEGTVKSITDFGAFIDLGGV-DGLLHISEMSYGRIKHP 270

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           S VV EG+ + VK+L  D ++GK+ L +K V
Sbjct: 271 SQVVSEGERIKVKVLRLDREKGKVSLGLKQV 301



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V ++  FGAFV      DGL+HISQ++  R+    +VV  GD V VK+++ D + 
Sbjct: 318 IVEGTVARLTTFGAFVELEPGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQN 377

Query: 682 -KIKLSMK 688
            +I LS++
Sbjct: 378 RRISLSLR 385


>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Opitutaceae bacterium TAV2]
 gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Opitutaceae bacterium TAV2]
          Length = 555

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  + KG V K+  FGAFV      DGLVHISQ+S ER+ K  DV+K G  V  +++  
Sbjct: 442 KIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKI 501

Query: 678 D-DRGKIKLSMKVVD 691
           D D  ++ LS+K  +
Sbjct: 502 DRDERRLGLSIKAAN 516



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  R ++ SI    +  ++ KG V  + DFGAF+   G  DGL+HI+ +S  R+A  S++
Sbjct: 173 EKRRNLLESI----QPGQVRKGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRIAHPSEM 227

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +K+G+ + V +++ + D+ ++ L +K   +N
Sbjct: 228 LKQGEEIQVMIIEVNRDKERVSLGLKQTTKN 258



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  +  +GAF+      DG+VH+S +S T +V   S+V+K+GD V   +LD D  + +
Sbjct: 362 GKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQR 421

Query: 683 IKLSMK 688
           I L MK
Sbjct: 422 ISLGMK 427



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEG 667
           P   KI+ G+VV ++ +GAF+      +GLVHI+++S T+R+ K S++++ G
Sbjct: 268 PVGTKIH-GKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEMLRVG 318


>gi|191638372|ref|YP_001987538.1| 30S ribosomal protein S1 [Lactobacillus casei BL23]
 gi|227535138|ref|ZP_03965187.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631542|ref|ZP_04674573.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|190712674|emb|CAQ66680.1| 30S Ribosomal protein S1 [Lactobacillus casei BL23]
 gi|227187183|gb|EEI67250.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239526007|gb|EEQ65008.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327382400|gb|AEA53876.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           LC2W]
 gi|327385601|gb|AEA57075.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           BD-II]
          Length = 439

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V ++ +FGAFV   G  DGLVH+S++S + V K SDV+K G  + VK+L+ D DR +
Sbjct: 207 EGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNR 265

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 266 ISLSIK 271



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S E VA  +DV+KEG  V VK+L  D D 
Sbjct: 290 VLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDA 349

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K + +
Sbjct: 350 HRLALSIKALQE 361


>gi|153952815|ref|YP_001393580.1| hypothetical protein CKL_0162 [Clostridium kluyveri DSM 555]
 gi|219853480|ref|YP_002470602.1| hypothetical protein CKR_0137 [Clostridium kluyveri NBRC 12016]
 gi|146345696|gb|EDK32232.1| Predicted ribosomal protein [Clostridium kluyveri DSM 555]
 gi|219567204|dbj|BAH05188.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V+ +  FGAFV   G + GLVHIS++S   V    D +KE D + VK++  DD G
Sbjct: 8   ILEGTVINITSFGAFVDVNG-KTGLVHISEVSDTYVKNIRDYLKEKDKIRVKIISIDDNG 66

Query: 682 KIKLSMKVVDQN 693
           KI LSMK  +++
Sbjct: 67  KISLSMKQAEKD 78


>gi|229084599|ref|ZP_04216869.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
 gi|228698749|gb|EEL51464.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
          Length = 382

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV+  G  DGLVHISQ+S +RV + +DV+ +G +V VK+L  D D 
Sbjct: 191 VVEGTVQRLTDFGAFVNVGGV-DGLVHISQISHDRVEQPADVLTQGQSVKVKVLSVDADT 249

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 250 QRISLSIK 257



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 276 IREGLVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 335

Query: 682 K-IKLSMK 688
           K I LS+K
Sbjct: 336 KRISLSIK 343


>gi|329929826|ref|ZP_08283502.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
 gi|328935804|gb|EGG32265.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
          Length = 405

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V ++  FGAFV   G  DGLVH+S+++   V K SDV+ EGD V VK+L  D +
Sbjct: 200 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPE 258

Query: 680 RGKIKLSMK 688
           +GKI LS+K
Sbjct: 259 KGKISLSIK 267



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V +++ FGAFV      +GLVHISQ+S + +    +V+KEG  V VK+LD +   
Sbjct: 286 IVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSE 345

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 346 QRISLSIK 353


>gi|116494865|ref|YP_806599.1| 30S ribosomal protein S1 [Lactobacillus casei ATCC 334]
 gi|116105015|gb|ABJ70157.1| SSU ribosomal protein S1P [Lactobacillus casei ATCC 334]
          Length = 439

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V ++ +FGAFV   G  DGLVH+S++S + V K SDV+K G  + VK+L+ D DR +
Sbjct: 207 EGKVARLTNFGAFVDLGGV-DGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNR 265

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 266 ISLSIK 271



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S E VA  +DV+KEG  V VK+L  D D 
Sbjct: 290 VLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDA 349

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K + +
Sbjct: 350 HRLALSIKALQE 361


>gi|119192732|ref|XP_001246972.1| hypothetical protein CIMG_00743 [Coccidioides immitis RS]
          Length = 1215

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P + K+Y G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD+V     V V
Sbjct: 255 PILYKVYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSRAQPVKV 314

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++      +I LSMK VDQ TG+ +V
Sbjct: 315 KVVSIQG-PRIGLSMKEVDQVTGRDLV 340


>gi|326434949|gb|EGD80519.1| zinc finger protein [Salpingoeca sp. ATCC 50818]
          Length = 266

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +P + KIY+  V  + ++GAFV   G  +  L+HISQ+S  R+   ++VV  GD ++ K+
Sbjct: 14  MPALYKIYRVAVTSIKEYGAFVEMEGFNKKALLHISQMSQSRINDPTEVVSVGDPLFAKV 73

Query: 675 LDFDDRGKIKLSMKVVDQNTG 695
           ++  + GKI +S+K V Q+ G
Sbjct: 74  IEIKEDGKISVSIKTVRQSDG 94


>gi|303247107|ref|ZP_07333382.1| RNA binding S1 domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491533|gb|EFL51418.1| RNA binding S1 domain protein [Desulfovibrio fructosovorans JJ]
          Length = 508

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL+  +A  +   S+++   V    +G+V ++ DFGAFV      +GL+H+S++S T R+
Sbjct: 271 SLSIKQAGPDPWDSVSEKFAVGDKVEGKVTRLADFGAFVELAPGIEGLIHVSEMSHTRRI 330

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           AK SDVV  GD V V + D D  + +I LS+K
Sbjct: 331 AKPSDVVNPGDVVTVSIKDIDLAKRRISLSLK 362



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D   + ++   L E E A   +R +  V     +    + +   FGAF       +GLVH
Sbjct: 173 DGRNIVVSRRKLLEEERAESELRFLESV-NPGDVIPAVITRFATFGAFAEVAPGLEGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD----DRGKIKLSMK 688
           +S+LS  R  K  D V  G  V VK+L FD     R +I LS+K
Sbjct: 232 LSELSWSRAEKPEDAVSLGQAVTVKVLAFDRDKKGRPRISLSIK 275


>gi|331002422|ref|ZP_08325940.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410238|gb|EGG89672.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 368

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG+V ++ DFGAFV      D L+H+SQ+S + V K SDV+K GD V   +++F++  
Sbjct: 279 VVKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEAD 338

Query: 682 -KIKLSMKVVDQ 692
            KI LS+K + Q
Sbjct: 339 KKISLSIKALTQ 350


>gi|187933110|ref|YP_001884760.1| 30S ribosomal protein S1 [Clostridium botulinum B str. Eklund 17B]
 gi|187721263|gb|ACD22484.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum B
           str. Eklund 17B]
          Length = 378

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I++G+VVK   FGAFV      +GLVHIS+++ E +AK SD ++    V VK+LDF+ D 
Sbjct: 280 IFEGKVVKFASFGAFVEIFEGIEGLVHISEITDENIAKPSDALELNQKVKVKVLDFNKDT 339

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 340 KRLSLSIK 347



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K++ +GAFV   G  +GLVHIS LS  RV +  +VVKE D V V +   D ++ K+
Sbjct: 198 GVVKKLVKYGAFVDIGGV-EGLVHISDLSWNRVNRPEEVVKENDKVEVYIGSIDVEKQKL 256

Query: 684 KLSMKVVDQ 692
            L +K +++
Sbjct: 257 SLVLKDINK 265


>gi|315222942|ref|ZP_07864821.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
 gi|315187892|gb|EFU21628.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
          Length = 399

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G  V VK+LD + D 
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|262373677|ref|ZP_06066955.1| transcriptional accessory protein [Acinetobacter junii SH205]
 gi|262311430|gb|EEY92516.1| transcriptional accessory protein [Acinetobacter junii SH205]
          Length = 785

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  +DD   +      LAE+E      R  
Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV+++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 624 FRTAKFREDITEVSQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPH 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712


>gi|256752354|ref|ZP_05493215.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748765|gb|EEU61808.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 140

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 44/73 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMKVV 690
           D  G+I LS+K V
Sbjct: 64  DANGRISLSIKKV 76


>gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 5 [Canis familiaris]
          Length = 238

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 18/238 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV         Y   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV---------YGPH 56

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +   R      Y+    +TGE  R     R+    G   R+     +         + I
Sbjct: 57  EASGHRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDI 116

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+ 
Sbjct: 117 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLSHVEEA 172

Query: 486 LG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            G   +   +      I  ++MD +   + E+ +   L+ A R    +   + +V+ +
Sbjct: 173 AGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 227


>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
          Length = 405

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V ++  FGAFV   G  DGLVH+S+++   V K SDV+ EGD V VK+L  D +
Sbjct: 200 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPE 258

Query: 680 RGKIKLSMK 688
           +GKI LS+K
Sbjct: 259 KGKISLSIK 267



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V +++ FGAFV      +GLVHISQ+S + +    +V+KEG  V VK+LD +   
Sbjct: 286 IVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSE 345

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 346 QRISLSIK 353


>gi|126666627|ref|ZP_01737605.1| General secretion pathway protein J [Marinobacter sp. ELB17]
 gi|126629015|gb|EAZ99634.1| General secretion pathway protein J [Marinobacter sp. ELB17]
          Length = 304

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + ++ D+ E   + +G V  V +FGAFV     +DGLVHIS L+   +    +VVK G
Sbjct: 155 EGVETLKDL-EPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISALADRFIKDPREVVKAG 213

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V VK+++ D  R +I L+M++ DQ   +P
Sbjct: 214 DIVKVKVMEVDIPRKRIALTMRMGDQPGQQP 244


>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 484

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+TV+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 674 LLDFD 678
           ++D D
Sbjct: 348 VIDVD 352


>gi|312898940|ref|ZP_07758328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           micronuciformis F0359]
 gi|310620102|gb|EFQ03674.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           micronuciformis F0359]
          Length = 660

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 3/107 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+   ++  S  A +E  RE  R+ +    E   + +G VVKVM +GAF+   G  +GL+
Sbjct: 441 DEHKNRLVLSRKAVLEVEREKKRAEVLKTIEEGSVVEGTVVKVMPYGAFIDL-GGVEGLL 499

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           HIS +S +R+    DV++ G+ V V +  FD +R +I LSMK + +N
Sbjct: 500 HISDISWKRINAVEDVLEVGEKVEVLVQKFDEERNRISLSMKALQKN 546



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + KG+V K++ FGA +       GL+H+S+L+ +R A   D++  GD + VK++  
Sbjct: 556 EVGDVVKGEVKKLLPFGAILAIDPELQGLLHVSELTDKRGAVVKDLIAVGDVLDVKIIGI 615

Query: 678 D-DRGKIKLSMKVVDQN 693
           D D+ KI LS+  ++++
Sbjct: 616 DTDKKKISLSVVAIEED 632


>gi|222111189|ref|YP_002553453.1| resolvase rnase h domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221730633|gb|ACM33453.1| Resolvase RNase H domain protein [Acidovorax ebreus TPSY]
          Length = 798

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK G
Sbjct: 668 EGVEDIADLRE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTG 726

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V VK+L+ D  R +I LSMK+
Sbjct: 727 DIVKVKVLEVDAARKRISLSMKL 749


>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
 gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
          Length = 392

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R++     V  I +G V K++ FGAFV      +GLVHIS+++ + V   + V   GDTV
Sbjct: 283 RTLVKKYPVGAIVEGSVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVDAPAQVCAVGDTV 342

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTG 695
            VK+++ D DR +I LSMK   +  G
Sbjct: 343 QVKVMEIDLDRRRISLSMKAAAETLG 368



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD D +R +
Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRER 269

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   ++  + +V
Sbjct: 270 ISLGLKQTTEDPWRTLV 286


>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
          Length = 500

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 7/86 (8%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   ++ KG+V K++ FG F+      +GLVHIS+L+   V     VVK  + V+VK
Sbjct: 290 THVP--GQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEDVFVK 347

Query: 674 LLDFD-DRGKIKLSMK----VVDQNT 694
           ++D D DR +I LS+K     VD N+
Sbjct: 348 VIDVDLDRRRISLSLKQANEAVDPNS 373


>gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97]
 gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97]
 gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 481

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
 gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
          Length = 500

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 7/86 (8%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   ++ KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK----VVDQNT 694
           ++D D DR +I LS+K     VD N+
Sbjct: 348 VIDVDLDRRRISLSLKQATEAVDPNS 373


>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
 gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
          Length = 495

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I +G+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|318058293|ref|ZP_07977016.1| transcriptional accessory protein [Streptomyces sp. SA3_actG]
          Length = 748

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK 
Sbjct: 621 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 679

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 680 GDIVKVKVLDVDLPRKRISLTLRLDDE 706


>gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
          Length = 479

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|114561423|ref|YP_748936.1| RNA-binding S1 domain-containing protein [Shewanella frigidimarina
           NCIMB 400]
 gi|114332716|gb|ABI70098.1| RNA binding S1 domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 790

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  V +FGAFV     +DGLVHIS L+ + V+    VVK GD V VK+++ 
Sbjct: 650 KVEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEV 709

Query: 678 D-DRGKIKLSM---------KVVDQNTGKP 697
           D +R +I LSM         K + Q+ GKP
Sbjct: 710 DIERRRIALSMRLDEKIDTEKAIRQSQGKP 739


>gi|213423738|ref|ZP_03356718.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 349

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 226 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 285

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 286 KRIALTMRLDEQ 297


>gi|320165541|gb|EFW42440.1| RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1303

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVW 671
            PEV +IY   V  + +FG F    G R   +GLVHIS++  E +V   +DVV  G  + 
Sbjct: 316 APEVGRIYDASVTSIKEFGFFAQLDGFRRKVEGLVHISEIRREGKVTNPADVVSRGQQIK 375

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGK 696
           VKL     + K+ LSMK VDQ TG+
Sbjct: 376 VKLKSIAGQ-KMSLSMKDVDQTTGE 399


>gi|326790718|ref|YP_004308539.1| Tex-like protein [Clostridium lentocellum DSM 5427]
 gi|326541482|gb|ADZ83341.1| Tex-like protein [Clostridium lentocellum DSM 5427]
          Length = 711

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  I D+ E  K+ KG V  ++DFGAF+     +DGLVHISQ+S + +    +VVK GD 
Sbjct: 632 ILEIKDLKEGMKL-KGTVRNIVDFGAFIDIGVHQDGLVHISQMSNKFIKHPLEVVKVGDI 690

Query: 670 VWVKLLDFDD-RGKIKLSMK 688
           V V +L  D  + KI LSMK
Sbjct: 691 VEVSILSVDTIKNKIALSMK 710


>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018]
 gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
          Length = 500

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 7/86 (8%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   ++ KG+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK----VVDQNT 694
           ++D D DR +I LS+K     VD N+
Sbjct: 348 VIDVDLDRRRISLSLKQANEAVDPNS 373


>gi|289804102|ref|ZP_06534731.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 348

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 222 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 281

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 282 KRIALTMRLDEQ 293


>gi|213586558|ref|ZP_03368384.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 502

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 379 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 438

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 439 KRIALTMRLDEQ 450


>gi|166031925|ref|ZP_02234754.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC
           27755]
 gi|166028378|gb|EDR47135.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC
           27755]
          Length = 359

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+K G+ V  K++D +
Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIVDLN 335

Query: 679 D-RGKIKLSMKVVD 691
           +   KI LSMK ++
Sbjct: 336 EAEKKISLSMKALE 349



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAF+   G  DGL+HIS++S  RV     V K GD + V + D  D  KI
Sbjct: 198 EGVVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFKVGDELKVLVKDIHDT-KI 255

Query: 684 KLSMKVVDQN 693
            LS+K  + N
Sbjct: 256 ALSLKFPESN 265


>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 493

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGVVSSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+K   ++
Sbjct: 269 RERISLSLKATQED 282



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I +G+V K++ FG F+      +GLVHIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|227528910|ref|ZP_03958959.1| RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
 gi|227351184|gb|EEJ41475.1| RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
          Length = 169

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V ++ +FGAFV     + GLVHISQ+S   V    DV+  GDTV VK+   
Sbjct: 4   EVGAKVSGKVSEITNFGAFVDLDDNQTGLVHISQISNNYVKDIHDVLSVGDTVTVKVTKV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LSMK
Sbjct: 64  GDDGKIALSMK 74


>gi|213426885|ref|ZP_03359635.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 779

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
          Length = 480

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11]
 gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|215404070|ref|ZP_03416251.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|215411275|ref|ZP_03420083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 94_M4241A]
 gi|215426948|ref|ZP_03424867.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T92]
 gi|215430522|ref|ZP_03428441.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|215445812|ref|ZP_03432564.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|218753336|ref|ZP_03532132.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis GM 1503]
 gi|219557550|ref|ZP_03536626.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T17]
 gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
 gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260186578|ref|ZP_05764052.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CPHL_A]
 gi|260200691|ref|ZP_05768182.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T46]
 gi|260204899|ref|ZP_05772390.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis K85]
 gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289554596|ref|ZP_06443806.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210]
 gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207]
 gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506]
 gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
           94_M4241A]
 gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475]
 gi|6226090|sp|O06147|RS1_MYCTU RecName: Full=30S ribosomal protein S1
 gi|2113914|emb|CAB08883.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium tuberculosis
           H37Rv]
 gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11]
 gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
 gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289439228|gb|EFD21721.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
           94_M4241A]
 gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
          Length = 481

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|325509261|gb|ADZ20897.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium acetobutylicum EA 2018]
          Length = 642

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 11/147 (7%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P   +     D ++  IG    V   I+E +  K         KI +S  A +   +E
Sbjct: 420 FIPASHVELFHVDNLKEYIGKSFDV--AIIEYSTKK------RQTKIVASRRALLSKEKE 471

Query: 609 MIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +  ++ +  E  ++ +G+V ++ DFGAFV   G  DGL+H+S++S  RV K +DV+K G
Sbjct: 472 KVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGV-DGLLHVSEISWGRVEKPADVLKIG 530

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + V +L  D +  K+ LS+K + +N
Sbjct: 531 DKIKVYVLSVDKENKKLSLSVKKLTEN 557



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683
           G+VV+  DFGAFV      DGLVHIS++S +R+AK SD +  G+ +  K+L+   +  KI
Sbjct: 574 GKVVRFADFGAFVELEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKI 633

Query: 684 KLSMKVVDQ 692
            LS++ V++
Sbjct: 634 GLSIREVEE 642


>gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886]
 gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886]
          Length = 775

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G +  V +FGAFV     +DGLVHIS LS + ++   DVVK GD V VK+++ D  R
Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPRDVVKAGDVVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ--NTGKPI 698
            +I LSM++ D+     KP+
Sbjct: 713 KRIGLSMRLSDEPGTDSKPV 732


>gi|254787791|ref|YP_003075220.1| transcriptional accessory protein [Teredinibacter turnerae T7901]
 gi|237685533|gb|ACR12797.1| putative transcriptional accessory protein [Teredinibacter turnerae
           T7901]
          Length = 773

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ E   I +G V  V +FGAFV     +DGLVHIS LS   V    +VVK 
Sbjct: 640 QEGVEKVSDL-EPGMILEGTVTNVTNFGAFVDVGVHQDGLVHISALSNTFVKDPREVVKA 698

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V  K+++ D DR +I LS+++ D
Sbjct: 699 GDIVKAKVMEVDVDRKRIALSLRLDD 724


>gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
 gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
          Length = 248

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 28/254 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 YN LP +T      +++++    R  EI   RL  RA+   +   A    T+ I
Sbjct: 57  GWITAEYNMLPRSTQSRKQRDINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V  G++ I
Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIV--GEEKI 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +EDH+  +D  V  T+ G    +Q   + G  S   +   L  A++G   ++ 
Sbjct: 173 L--DLCYEEDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQ 230

Query: 534 EMSKVLSESRLQLG 547
                L    L +G
Sbjct: 231 AQKDALKTDSLWIG 244


>gi|168241644|ref|ZP_02666576.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194449194|ref|YP_002047528.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194407498|gb|ACF67717.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205339078|gb|EDZ25842.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 776

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
          Length = 479

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQNTGK 696
            ++ LS+K   ++  +
Sbjct: 270 ERVSLSLKATQEDPWR 285



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|147676524|ref|YP_001210739.1| RNA binding protein [Pelotomaculum thermopropionicum SI]
 gi|146272621|dbj|BAF58370.1| predicted RNA binding protein [Pelotomaculum thermopropionicum SI]
          Length = 126

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V  + +FGAF+   G   GLVHIS+++   V    D +K  D V VK++  
Sbjct: 4   EVGSVLEGVVTGITNFGAFIELPGGETGLVHISEIAEVYVKDVHDFLKTNDKVTVKVISI 63

Query: 678 DDRGKIKLSMKVVD 691
           D +GKI LS+K V+
Sbjct: 64  DPKGKIGLSIKQVN 77


>gi|29144270|ref|NP_807612.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|29139907|gb|AAO71472.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 776

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|302522933|ref|ZP_07275275.1| LOW QUALITY PROTEIN: transcription accessory protein [Streptomyces
           sp. SPB78]
 gi|302431828|gb|EFL03644.1| LOW QUALITY PROTEIN: transcription accessory protein [Streptomyces
           sp. SPB78]
          Length = 749

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK 
Sbjct: 637 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 696 GDIVKVKVLDVDLPRKRISLTLRLDDE 722


>gi|168465228|ref|ZP_02699120.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195632126|gb|EDX50610.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 777

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium acetobutylicum ATCC 824]
 gi|50401136|sp|Q97I09|ISPH_CLOAB RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase
 gi|15024823|gb|AAK79811.1|AE007693_9 penicillin tolerance LytB domain/S1 ribosomal protein fusion
           [Clostridium acetobutylicum ATCC 824]
          Length = 642

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 11/147 (7%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P   +     D ++  IG    V   I+E +  K         KI +S  A +   +E
Sbjct: 420 FIPASHVELFHVDNLKEYIGKSFDV--AIIEYSTKK------RQTKIVASRRALLSKEKE 471

Query: 609 MIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +  ++ +  E  ++ +G+V ++ DFGAFV   G  DGL+H+S++S  RV K +DV+K G
Sbjct: 472 KVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGV-DGLLHVSEISWGRVEKPADVLKIG 530

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + V +L  D +  K+ LS+K + +N
Sbjct: 531 DKIKVYVLSVDKENKKLSLSVKKLTEN 557



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683
           G+V++  DFGAFV      DGLVHIS++S +R+AK SD +  G+ +  K+L+   +  KI
Sbjct: 574 GKVIRFADFGAFVKLEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKI 633

Query: 684 KLSMKVVDQ 692
            LS++ V++
Sbjct: 634 GLSIREVEE 642


>gi|16762783|ref|NP_458400.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|56415419|ref|YP_152494.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364349|ref|YP_002143986.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|213163102|ref|ZP_03348812.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213852068|ref|ZP_03381600.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289824836|ref|ZP_06544279.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25304123|pir||AB0998 probable transcription accessory protein STY4292 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505089|emb|CAD08110.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|56129676|gb|AAV79182.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095826|emb|CAR61399.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 776

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 480

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|224368352|ref|YP_002602515.1| 30S ribosomal protein S1 [Desulfobacterium autotrophicum HRM2]
 gi|223691068|gb|ACN14351.1| RpsA1 [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--- 678
           I  G V K+M +GAF+      +G+ HIS+LS  RV K  +VVK+G+TV VKLL  +   
Sbjct: 207 ILTGSVTKLMPYGAFIELVPGVEGMAHISELSWSRVDKAEEVVKQGETVKVKLLKIETKE 266

Query: 679 --DRGKIKLSMK 688
             D  KI LS+K
Sbjct: 267 GADMPKISLSIK 278



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV++  FGAFV      DGLVH+S++S T R+ K  DVV  G+ V V + D D ++ +
Sbjct: 301 GKVVRLAPFGAFVEIAPGMDGLVHLSEMSHTRRIVKADDVVTLGEMVQVVVKDIDIEKRR 360

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 361 ISLSIK 366


>gi|213647810|ref|ZP_03377863.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 774

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 651 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 710

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 711 KRIALTMRLDEQ 722


>gi|167990707|ref|ZP_02571806.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168260772|ref|ZP_02682745.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197264071|ref|ZP_03164145.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|308065953|ref|NP_462407.2| RNase R [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197242326|gb|EDY24946.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205330816|gb|EDZ17580.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205350471|gb|EDZ37102.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|312914528|dbj|BAJ38502.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226554|gb|EFX51604.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323131863|gb|ADX19293.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 776

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|71064708|ref|YP_263435.1| hypothetical protein Psyc_0127 [Psychrobacter arcticus 273-4]
 gi|71037693|gb|AAZ18001.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 840

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I +G V  V  FG F+     +DGLVHISQ++ + VA   + VK 
Sbjct: 672 RDDVNSIKDLSE-GMILEGVVTNVTAFGCFIDVGVHQDGLVHISQMANDFVADPMNRVKP 730

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V+++  D+ RG+I  SMK   +   +P
Sbjct: 731 GDIVSVRVISIDEKRGRIGFSMKPEAEKPARP 762


>gi|240168008|ref|ZP_04746667.1| 30S ribosomal protein S1 [Mycobacterium kansasii ATCC 12478]
          Length = 481

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|239927485|ref|ZP_04684438.1| transcription accessory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291435829|ref|ZP_06575219.1| transcription accessory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291338724|gb|EFE65680.1| transcription accessory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 792

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E +  I+D+     + +G V  V  FGAFV     +DGLVH+S +S   V    DVV
Sbjct: 638 AFKEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVV 696

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K GD V VK+LD D  R +I L++++ D+  G+
Sbjct: 697 KPGDIVKVKVLDVDIPRKRISLTLRLDDEAAGQ 729


>gi|197334228|ref|YP_002154889.1| protein YhgF [Vibrio fischeri MJ11]
 gi|197315718|gb|ACH65165.1| protein YhgF [Vibrio fischeri MJ11]
          Length = 771

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + +++D+ E+  + +G V  V +FGAFV     +DGLVHIS LS   V+   +VVK GD 
Sbjct: 639 VNTVSDL-ELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDI 697

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 698 VKVKVMEVDVQRKRIALSMRLNDK 721


>gi|291534309|emb|CBL07421.1| Ribosomal protein S1 [Roseburia intestinalis M50/1]
          Length = 303

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +M +GAF++      GLVHISQ+   R+ K S+V+KEG  V  K+L+ +D  
Sbjct: 197 VLEGTVETLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKAKVLNTNDN- 255

Query: 682 KIKLSMKVVDQ 692
           KI LSMK +++
Sbjct: 256 KISLSMKALEE 266


>gi|317050828|ref|YP_004111944.1| Tex-like protein [Desulfurispirillum indicum S5]
 gi|316945912|gb|ADU65388.1| Tex-like protein [Desulfurispirillum indicum S5]
          Length = 729

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++++G V  V+DFGAFV      DGLVHIS+L+   V    +VV  G+ V V++L  
Sbjct: 655 EAGQVFEGVVRNVVDFGAFVDIGLKNDGLVHISELADTFVKNPHEVVSVGNRVRVRVLSI 714

Query: 678 D-DRGKIKLSMK 688
           D  RG++ LSMK
Sbjct: 715 DKSRGRLSLSMK 726


>gi|225872519|ref|YP_002753974.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793377|gb|ACO33467.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 753

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E ++ ITD+ E   + +G V  V  FGAFV     +DGLVHIS+LS   + + S+ VK G
Sbjct: 636 EGVKEITDLKE-GMVLEGVVTNVTKFGAFVDVGVHQDGLVHISELSNRFIKEPSEAVKAG 694

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
             V VK+L  D + K I LSM+ + +  G+
Sbjct: 695 QIVRVKVLSADAKTKRIALSMRALMEPIGR 724


>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
 gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
          Length = 441

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V+ I +G V K++ FGAFV      +GLVHIS+++ + V   S V   GD V VK+++ D
Sbjct: 291 VDAIVEGTVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVTAPSQVCTVGDKVQVKVMEID 350

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LSMK   +  G
Sbjct: 351 LDRRRISLSMKAAAETLG 368



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  +++FGAFV   G  DGLVHIS+LS   V   S+VVK G  V V++LD D +R 
Sbjct: 210 LQGTVSSIVEFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRE 268

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L +K   Q T  P
Sbjct: 269 RISLGLK---QTTEDP 281


>gi|162455512|ref|YP_001617879.1| hypothetical protein sce7230 [Sorangium cellulosum 'So ce 56']
 gi|161166094|emb|CAN97399.1| rpsA3 [Sorangium cellulosum 'So ce 56']
          Length = 683

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQL 652
           ++   + E E+ +    ++T + E   ++KG V KV+ +G FV     G  +GLVH+S+ 
Sbjct: 380 VSRRKMLEEESRKARTEALTSI-EPGSLHKGIVRKVVAWGVFVALPDAGGVEGLVHMSEA 438

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S +R AK +D+ K G  + VK+L  DD+GK+ LS K  
Sbjct: 439 SHDRGAKLADLFKPGAEIDVKVLRVDDKGKLWLSRKAA 476


>gi|59710727|ref|YP_203503.1| transcriptional accessory protein [Vibrio fischeri ES114]
 gi|59478828|gb|AAW84615.1| predicted transcriptional accessory protein [Vibrio fischeri ES114]
          Length = 771

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + +++D+ E+  + +G V  V +FGAFV     +DGLVHIS LS   V+   +VVK GD 
Sbjct: 639 VNTVSDL-ELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDI 697

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 698 VKVKVMEVDVQRKRIALSMRLNDK 721


>gi|83588965|ref|YP_428974.1| RNA binding S1 [Moorella thermoacetica ATCC 39073]
 gi|83571879|gb|ABC18431.1| RNA binding S1 [Moorella thermoacetica ATCC 39073]
          Length = 130

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  +  FGAFV   G   GLVHIS+++   V   +D VKE D V VK+++ D
Sbjct: 5   VGTVLEGVVSGITKFGAFVELPGGLTGLVHISEVADTYVKDVNDYVKEKDRVRVKVINID 64

Query: 679 DRGKIKLSMK 688
           ++GKI LS+K
Sbjct: 65  EKGKIGLSIK 74


>gi|260550802|ref|ZP_05825009.1| transcriptional accessory protein [Acinetobacter sp. RUH2624]
 gi|260406112|gb|EEW99597.1| transcriptional accessory protein [Acinetobacter sp. RUH2624]
          Length = 795

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  +DD   +      LAE+E      R  
Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 696 KVVKPGQIVQVRVMQVDAERNRVNLSMRA 724


>gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
 gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
          Length = 491

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E  +  +RS      E  ++ KG V  +++FGAFV   G  DGLVH+S+LS + 
Sbjct: 184 SRRAYLEETQSAVRSDFLHQLEKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 242

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 243 IDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|289579282|ref|YP_003477909.1| RNA binding S1 domain protein [Thermoanaerobacter italicus Ab9]
 gi|297545433|ref|YP_003677735.1| RNA binding S1 domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|289528995|gb|ADD03347.1| RNA binding S1 domain protein [Thermoanaerobacter italicus Ab9]
 gi|296843208|gb|ADH61724.1| RNA binding S1 domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 140

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DSSGRISLSIK 74


>gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1]
 gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1]
          Length = 481

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|318079275|ref|ZP_07986607.1| transcriptional accessory protein [Streptomyces sp. SA3_actF]
          Length = 741

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK 
Sbjct: 621 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 679

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 680 GDIVKVKVLDVDLPRKRISLTLRLDDE 706


>gi|260655105|ref|ZP_05860593.1| general stress protein 13 [Jonquetella anthropi E3_33 E1]
 gi|260630216|gb|EEX48410.1| general stress protein 13 [Jonquetella anthropi E3_33 E1]
          Length = 144

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V ++M +GAFV     +  ++HISQLS   + K  DV++    V  K+   D+RG
Sbjct: 17  VVTGTVEQIMPYGAFVRLSDGQRAMIHISQLSHRFIKKVEDVLQLNQEVKAKVTKIDERG 76

Query: 682 KIKLSMKVVDQNTGKP 697
           +I LSMKV+++    P
Sbjct: 77  RIDLSMKVLEEPMPAP 92


>gi|16422063|gb|AAL22366.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|261248659|emb|CBG26497.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995724|gb|ACY90609.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160047|emb|CBW19566.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|332990356|gb|AEF09339.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 775

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|238855194|ref|ZP_04645513.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
 gi|260664557|ref|ZP_05865409.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
 gi|282932512|ref|ZP_06337937.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
 gi|313471977|ref|ZP_07812469.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
 gi|238832086|gb|EEQ24404.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
 gi|239529091|gb|EEQ68092.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
 gi|260561622|gb|EEX27594.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
 gi|281303461|gb|EFA95638.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
          Length = 402

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G+V  +  FGAFV       GLVH+S++S +RV K SDV+K G+TV VK+L+ + D
Sbjct: 284 EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLNINPD 343

Query: 680 RGKIKLSMK 688
             +I LS+K
Sbjct: 344 EKRISLSIK 352



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           I +G+V ++ +FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++   DDR
Sbjct: 200 IVEGKVSRLTNFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 259 HRISLSIK 266


>gi|224543167|ref|ZP_03683706.1| hypothetical protein CATMIT_02367 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523954|gb|EEF93059.1| hypothetical protein CATMIT_02367 [Catenibacterium mitsuokai DSM
           15897]
          Length = 716

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 6/89 (6%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I ++ D+  V+   +G V  V+DFGAFV      DGLVHIS++S  R+   SDVV  
Sbjct: 631 RQDILTLEDL-HVHDKLEGTVRNVVDFGAFVDIGLHEDGLVHISKMSKNRIKHPSDVVSV 689

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693
           GD  T WV  +D + R K++L+M  +D N
Sbjct: 690 GDIVTTWVDTID-EQRHKVQLTM--IDPN 715


>gi|169794453|ref|YP_001712246.1| hypothetical protein ABAYE0261 [Acinetobacter baumannii AYE]
 gi|169147380|emb|CAM85241.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
          Length = 794

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 18/148 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  +DD   +      LAE+E      R  
Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            VVK G  V V+++  D +R ++ LSM+
Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMR 723


>gi|288572996|ref|ZP_06391353.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568737|gb|EFC90294.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 160

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V +VM +GAFV     +  +VHISQLS   +   SDVV     +  K++  DD+G
Sbjct: 18  VVTGVVEQVMPYGAFVRLSTGQRAMVHISQLSHNFIKNVSDVVSAEQEITAKVIKIDDKG 77

Query: 682 KIKLSMKVVDQNTGKP 697
           +I LS+K + +   +P
Sbjct: 78  RIDLSIKAMSEPPARP 93


>gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
 gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
          Length = 403

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K   TV VK+L+ D  D
Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSD 344

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LS+K  D N 
Sbjct: 345 R-RISLSIKAADSNA 358



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V  + +G+V ++ +FGAF+   G  DGLVHIS++S + V K SDV+K G  V VK++   
Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255

Query: 678 DDRGKIKLSMK 688
           DDR +I LS+K
Sbjct: 256 DDRHRISLSIK 266


>gi|153837872|ref|ZP_01990539.1| protein YhgF [Vibrio parahaemolyticus AQ3810]
 gi|149748735|gb|EDM59580.1| protein YhgF [Vibrio parahaemolyticus AQ3810]
          Length = 773

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S+ D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724


>gi|116618382|ref|YP_818753.1| transcriptional accessory protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097229|gb|ABJ62380.1| Transcriptional accessory protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 730

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V+DFGAFV      DGLVHIS++ST R+   S++V  GD V V ++D D+ R +
Sbjct: 662 QGTVRNVVDFGAFVDLGVKHDGLVHISRISTRRIKHPSEIVSVGDIVEVWIVDVDEKRNR 721

Query: 683 IKLSM 687
           I L+M
Sbjct: 722 IGLTM 726


>gi|168704591|ref|ZP_02736868.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246]
          Length = 618

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           +G+V K+ +FG FV      +GL+HIS+L+  +V    +VVK GD V VK+L  D  DR 
Sbjct: 477 RGKVTKLTNFGVFVQLEEGLEGLLHISELTDAKVESPEEVVKVGDEVDVKVLRVDAKDR- 535

Query: 682 KIKLSMKVVDQNT 694
           KI LSMK VD NT
Sbjct: 536 KIGLSMKNVDDNT 548



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+VV +M +GAFV      +GLVHIS++S  +R+A   ++V+ GD V V++L+ 
Sbjct: 297 INSRHTGEVVNIMPYGAFVKLEPGIEGLVHISEMSWIKRIADPKEIVQIGDKVEVQVLNI 356

Query: 678 D-DRGKIKLSMKVVDQN 693
           + D+ +I L MK    N
Sbjct: 357 NHDKKEISLGMKQCQSN 373



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I  G V  + +FGAFV   G  DGL+HI+ +   RV    DVV+   T+ V +L  
Sbjct: 211 EVGQIRTGVVKNIAEFGAFVDLGGI-DGLLHITDMGWHRVTNPRDVVQIDQTLEVYILHI 269

Query: 678 D-DRGKIKLSMK 688
           D ++ KI LS+K
Sbjct: 270 DREKEKIALSLK 281


>gi|28896924|ref|NP_796529.1| hypothetical protein VP0150 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365889|ref|ZP_05778383.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877824|ref|ZP_05890179.1| protein YhgF [Vibrio parahaemolyticus AN-5034]
 gi|260895527|ref|ZP_05904023.1| protein YhgF [Vibrio parahaemolyticus Peru-466]
 gi|28805132|dbj|BAC58413.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088488|gb|EFO38183.1| protein YhgF [Vibrio parahaemolyticus Peru-466]
 gi|308090101|gb|EFO39796.1| protein YhgF [Vibrio parahaemolyticus AN-5034]
 gi|308113482|gb|EFO51022.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 773

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S+ D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724


>gi|19114165|ref|NP_593253.1| ATP-dependent RNA helicase Prp22 [Schizosaccharomyces pombe 972h-]
 gi|3913431|sp|O42643|PRP22_SCHPO RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
           prp22
 gi|2661607|emb|CAA15715.1| ATP-dependent RNA helicase Prp22 [Schizosaccharomyces pombe]
          Length = 1168

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGD 668
           + + P +  IY G V  + DFGAFV   G R   DGLVHIS +    R+   S+ V  G 
Sbjct: 200 LLNAPTLYGIYSGVVSGIKDFGAFVTLDGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQ 259

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
            V+VK++  D+  K I LSMK V+Q TG+
Sbjct: 260 PVFVKVIRIDESAKRISLSMKEVNQVTGE 288


>gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
 gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
          Length = 385

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V ++ +FGAFV   G  DGLVHISQL+  RV   SD+V EGD V VK+L  D D  +
Sbjct: 194 EGTVQRLTNFGAFVDVGGV-DGLVHISQLAHHRVETPSDIVNEGDKVKVKVLSVDPDSER 252

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 253 VSLSIK 258



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V +++ FGAFV      +GLVHISQ++   +   S+V+ EG+ V VK+LD + D 
Sbjct: 277 VIEGTVRRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPSEVLTEGEKVEVKVLDVNLDD 336

Query: 681 GKIKLSMK 688
            +I LS++
Sbjct: 337 KRISLSIR 344


>gi|328471699|gb|EGF42576.1| hypothetical protein VP10329_01050 [Vibrio parahaemolyticus 10329]
          Length = 773

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S+ D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724


>gi|260556886|ref|ZP_05829103.1| transcriptional accessory protein [Acinetobacter baumannii ATCC
           19606]
 gi|260409492|gb|EEX02793.1| transcriptional accessory protein [Acinetobacter baumannii ATCC
           19606]
          Length = 794

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  +DD   +      LAE+E      R  
Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 636 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724


>gi|260902551|ref|ZP_05910946.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308109731|gb|EFO47271.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 773

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S+ D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G
Sbjct: 640 EGVNSVADL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDVQRKRIGLSMRLNDE 724


>gi|85710776|ref|ZP_01041837.1| Transcriptional accessory protein [Idiomarina baltica OS145]
 gi|85695180|gb|EAQ33117.1| Transcriptional accessory protein [Idiomarina baltica OS145]
          Length = 768

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ E     +G V  V +FGAFV     +DGLVHIS L+   V+   D+VK 
Sbjct: 638 KEGVEKVSDL-EPGMTLEGVVTNVANFGAFVDIGVHQDGLVHISALADTFVSDPRDIVKA 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V V++++ D DR +I LSM+  DQ
Sbjct: 697 GDIVTVRVVEVDIDRKRIGLSMRKDDQ 723


>gi|116626034|ref|YP_828190.1| RNA-binding S1 domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229196|gb|ABJ87905.1| RNA binding S1 domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 749

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +R I D+ +     +G V  V  FGAF+      DGLVH+SQL+   V   S+VVK 
Sbjct: 631 REDVREIADL-QPGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKA 689

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           G  V V+++  D + K I LSMK +D    +P
Sbjct: 690 GQIVKVQVISADPKTKRIALSMKALDAAPPEP 721


>gi|308231891|ref|ZP_07414153.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308369488|ref|ZP_07417965.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308375631|ref|ZP_07444575.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308376775|ref|ZP_07439993.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308377781|ref|ZP_07480385.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308378993|ref|ZP_07484583.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308380132|ref|ZP_07488808.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
 gi|308215731|gb|EFO75130.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308327429|gb|EFP16280.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308345717|gb|EFP34568.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308350016|gb|EFP38867.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308354653|gb|EFP43504.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308358609|gb|EFP47460.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308362535|gb|EFP51386.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
          Length = 392

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 122 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 180

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 181 ERVSLSLKATQED 193



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  
Sbjct: 196 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDA 255

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 256 MVKVIDIDLERRRISLSLKQANED 279


>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
 gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
          Length = 494

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP   +I KG+V K++ FG FV      +GL+HIS+L+   V     VVK G+ V+VK
Sbjct: 290 THVP--GQIVKGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVDNPETVVKPGEEVFVK 347

Query: 674 LLDFD-DRGKIKLSMK 688
           ++D D DR +I LS+K
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G +  +++FGAFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D D
Sbjct: 210 QIREGTISSIVNFGAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLD 268

Query: 680 RGKIKLSMK 688
           R +I LS+K
Sbjct: 269 RERISLSLK 277


>gi|260654143|ref|ZP_05859633.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
 gi|260631128|gb|EEX49322.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
          Length = 500

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 7/85 (8%)

Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           N+  KGQ     VV++ DFGAFV      +GL+HISQLS++RV K  DV+ EG  V  ++
Sbjct: 363 NRYAKGQDVQVKVVRLADFGAFVELEEGVEGLIHISQLSSKRVDKPKDVLTEGQEVTARI 422

Query: 675 LDFD-DRGKIKLSMKVVDQ-NTGKP 697
           L+ +    +I+LS++ ++    GKP
Sbjct: 423 LEVNPTERRIRLSLRALEAPEAGKP 447


>gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99]
 gi|183982447|ref|YP_001850738.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
 gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99]
 gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
          Length = 481

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|120596942|ref|YP_961516.1| RNA-binding S1 domain-containing protein [Shewanella sp. W3-18-1]
 gi|120557035|gb|ABM22962.1| RNA binding S1 domain protein [Shewanella sp. W3-18-1]
          Length = 813

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  I +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++
Sbjct: 683 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 740

Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696
            D +R +I LSM++   +DQN  +
Sbjct: 741 VDVERRRIGLSMRLDEAIDQNNAQ 764


>gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977]
 gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
          Length = 481

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|160945504|ref|ZP_02092730.1| hypothetical protein FAEPRAM212_03033 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443235|gb|EDP20240.1| hypothetical protein FAEPRAM212_03033 [Faecalibacterium prausnitzii
           M21/2]
          Length = 182

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +++G+V  V  FGAFV     R G+VHIS++S E V   + V+ +GD V V++++ 
Sbjct: 4   EVGNVFEGRVTGVKPFGAFVALPEGRVGMVHISEVSNEFVQDINTVLHDGDAVKVQVINI 63

Query: 678 DDRGKIKLSMK 688
              GKI LS+K
Sbjct: 64  APDGKIALSIK 74


>gi|93004967|ref|YP_579404.1| RNA binding S1 [Psychrobacter cryohalolentis K5]
 gi|92392645|gb|ABE73920.1| RNA binding S1 [Psychrobacter cryohalolentis K5]
          Length = 840

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + SI D+ E     +G V  V  FG F+     +DGLVHISQ++ + VA   + VK 
Sbjct: 672 REDVNSIKDLSE-GMTLEGVVTNVTAFGCFIDVGVHQDGLVHISQMANDFVADPMNRVKP 730

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V+++  D+ RG+I  SMK   +   +P
Sbjct: 731 GDIVSVRVISIDEKRGRIGFSMKPEAEKPARP 762


>gi|331696880|ref|YP_004333119.1| Tex-like protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951569|gb|AEA25266.1| Tex-like protein [Pseudonocardia dioxanivorans CB1190]
          Length = 831

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 13/119 (10%)

Query: 587 IDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDFG 634
           +DD   +   +  LAE+E      R   R+ T    V+ I         +G V  V  FG
Sbjct: 610 VDDTVGLPTVTDILAELEKPGRDPRPAFRTATFAEGVHTIGDLRPGMLLEGVVTNVAAFG 669

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           AFV     +DGLVH+S +ST  V+   +VVK GD V VK+LD D+ R +I L++++ D+
Sbjct: 670 AFVDVGVHQDGLVHVSAMSTSFVSDPREVVKSGDVVRVKVLDVDEPRKRISLTLRLDDE 728


>gi|184159741|ref|YP_001848080.1| transcriptional accessory protein [Acinetobacter baumannii ACICU]
 gi|239502002|ref|ZP_04661312.1| transcriptional accessory protein [Acinetobacter baumannii AB900]
 gi|332850219|ref|ZP_08432582.1| Tex-like protein [Acinetobacter baumannii 6013150]
 gi|332868814|ref|ZP_08438419.1| Tex-like protein [Acinetobacter baumannii 6013113]
 gi|332874243|ref|ZP_08442163.1| Tex-like protein [Acinetobacter baumannii 6014059]
 gi|183211335|gb|ACC58733.1| Transcriptional accessory protein [Acinetobacter baumannii ACICU]
 gi|322509654|gb|ADX05108.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
 gi|323519674|gb|ADX94055.1| transcriptional accessory protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730863|gb|EGJ62171.1| Tex-like protein [Acinetobacter baumannii 6013150]
 gi|332733128|gb|EGJ64326.1| Tex-like protein [Acinetobacter baumannii 6013113]
 gi|332737527|gb|EGJ68434.1| Tex-like protein [Acinetobacter baumannii 6014059]
          Length = 782

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  +DD   +      LAE+E      R  
Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712


>gi|81428628|ref|YP_395628.1| 30S ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610270|emb|CAI55319.1| 30S Ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
          Length = 403

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V ++ +FGAFV   G  DGLVH+S++S + + + SDV++ G  V VK+L  D ++
Sbjct: 207 IVEGEVARLTNFGAFVDLGGV-DGLVHVSEISYDHINQPSDVLEVGQNVKVKILSLDQEK 265

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 266 GRISLSIK 273



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I +   V    +G V ++  FGAFV      +GLVHISQ+S + +A  +DV++EG TV V
Sbjct: 283 IAEKAPVGSTLEGTVKRLTTFGAFVEVFPGVEGLVHISQISHQHIATPNDVLEEGQTVQV 342

Query: 673 KLLDFD-DRGKIKLSMKVVDQ 692
           K+L  D ++ ++ LS+K + +
Sbjct: 343 KVLSVDPEQQRLGLSIKALQE 363


>gi|227431684|ref|ZP_03913715.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352557|gb|EEJ42752.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 730

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V+DFGAFV      DGLVHIS++ST R+   S++V  GD V V ++D D+ R +
Sbjct: 662 QGTVRNVVDFGAFVDLGVKHDGLVHISRISTRRIKHPSEIVSVGDIVEVWIVDVDEKRNR 721

Query: 683 IKLSM 687
           I L+M
Sbjct: 722 IGLTM 726


>gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus]
          Length = 481

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|326391645|ref|ZP_08213172.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992298|gb|EGD50763.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 143

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DANGRISLSIK 74


>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
 gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
           malayi]
          Length = 249

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 9/228 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +++ +   R DGR    +R+++ ++G+  +  GS+   +G+T+ +  V  G  E +Q   
Sbjct: 2   SIISEHGFRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAV-YGPYEPKQRSR 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
            L    R      Y+    +T E        RR +   RL  +A    +  T  +P + +
Sbjct: 61  LLE--DRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEEAI-LTENYPRSQI 117

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+ ++DGS   A V   +LAL DAGVP+   VA  +      G   +   D++  E
Sbjct: 118 DVFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGG---LACVDVNSRE 174

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           + +G +      T SG  A+ M      + +N +++ L  A++   H+
Sbjct: 175 E-MGIVPRLTVATISGQDAVVMAELQNRLHKNHLMVILGNARKATAHV 221


>gi|160878496|ref|YP_001557464.1| RNA-binding S1 domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160427162|gb|ABX40725.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg]
          Length = 722

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I KG V  V+DFGAFV     +DGLVHISQLS ++  K   D+V  GD V VK+L  D  
Sbjct: 653 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQLSKQKFVKHPLDIVSVGDIVEVKVLSVDVS 712

Query: 680 RGKIKLSM 687
           + +I+LSM
Sbjct: 713 KKRIQLSM 720


>gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
 gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
          Length = 248

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 28/254 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 YN LP +T      +++++    R  EI   RL  RA+   +   A    T+ I
Sbjct: 57  GWITAEYNMLPRSTQSRKQRDINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V  G++ I
Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIV--GEEKI 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +EDH+  +D  V  T+ G    +Q   + G  S   +   L  A++G   ++ 
Sbjct: 173 L--DLCYEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQ 230

Query: 534 EMSKVLSESRLQLG 547
                L    L +G
Sbjct: 231 AQKDALKTDSLWIG 244


>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 248

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 101/224 (45%), Gaps = 13/224 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R DGR    +R I   VG+L++  GS+ F+      I+    G R  E +   
Sbjct: 12  LITEEGIRTDGRLPHEMRPIKMMVGVLEKADGSA-FVEWGGNRILAAVFGPR--EVHPKH 68

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +    R      YN  P +T E  R G P RR I   ++ R A+ P +         + I
Sbjct: 69  MVLPDRALIRARYNMAPFSTPERRRPG-PDRRSIELSKVIREALKPAIFAENYPGSVIDI 127

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+  SD  + +A +  +SLAL  AGV +   V+  ++G V     FI++ D + DED 
Sbjct: 128 FVEVLRSDAGTRVAGINAASLALASAGVAMRGLVSACSVGRV---GSFIVV-DPNHDEDM 183

Query: 486 LGHMDFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            G  D  +A       IT +Q D   G +SE     AL   +R 
Sbjct: 184 WGDSDMPLAMMMESEEITLLQAD---GTLSEEEFKEALDLGRRA 224



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 17/211 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+  G +  ++DG+    +G   +LA V   R +       P    +   Y    ++
Sbjct: 29  RPIKMMVG-VLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALIRARYNMAPFS 87

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCYKNET-QVIINVMQHDLESSPH 127
             +      RR   P    I +S++I  +++P +F++ Y      + + V++ D  +   
Sbjct: 88  TPE------RRRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVLRSD--AGTR 139

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           V  + AAS AL  +G+   G V    V  +    V++P  DED  G  D+ ++   ++  
Sbjct: 140 VAGINAASLALASAGVAMRGLVSACSVGRVGSFIVVDPNHDEDMWGDSDMPLAMMMESEE 199

Query: 187 MVELEAN-QLSEDVVLDAIIFGHNECKPVIE 216
           +  L+A+  LSE+   +A+  G    + V E
Sbjct: 200 ITLLQADGTLSEEEFKEALDLGRRAIRFVYE 230


>gi|54035138|gb|AAH84130.1| LOC495036 protein [Xenopus laevis]
          Length = 77

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++PE+++I+KG+V  V ++GAF+   G R  GLVH S +S+  V + S+VV  G+ VWVK
Sbjct: 3   NLPELHEIFKGEVASVTEYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVWVK 62

Query: 674 LL 675
           ++
Sbjct: 63  VI 64


>gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK]
 gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1P [Mycobacterium sp. Spyr1]
 gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK]
 gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium sp. Spyr1]
          Length = 481

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQNTGK 696
            ++ LS+K   ++  +
Sbjct: 270 ERVSLSLKATQEDPWR 285



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|333023225|ref|ZP_08451289.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
 gi|332743077|gb|EGJ73518.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
          Length = 853

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ E   + +G V  V  FGAF+     +DGLVH+S LS E V    +VVK 
Sbjct: 649 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSREFVKDPREVVKP 707

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 708 GDIVKVKVLDVDLPRKRISLTLRLDDE 734


>gi|238020739|ref|ZP_04601165.1| hypothetical protein GCWU000324_00629 [Kingella oralis ATCC 51147]
 gi|237867719|gb|EEP68725.1| hypothetical protein GCWU000324_00629 [Kingella oralis ATCC 51147]
          Length = 765

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  + D+ +V  + +G V  V +FGAFV     +DGLVHIS L+   V    DVVK G
Sbjct: 627 EGVHDMNDL-QVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALADRFVQDPRDVVKAG 685

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 686 DVVKVKVLEVDVPRKRIALTMRLNDE 711


>gi|167036685|ref|YP_001664263.1| hypothetical protein Teth39_0258 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115112|ref|YP_004185271.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855519|gb|ABY93927.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928203|gb|ADV78888.1| RNA binding S1 domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 140

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DANGRISLSIK 74


>gi|213158974|ref|YP_002320972.1| RNA binding S1 domain protein [Acinetobacter baumannii AB0057]
 gi|215482042|ref|YP_002324224.1| Protein tex [Acinetobacter baumannii AB307-0294]
 gi|301345046|ref|ZP_07225787.1| hypothetical protein AbauAB0_02357 [Acinetobacter baumannii AB056]
 gi|301512670|ref|ZP_07237907.1| hypothetical protein AbauAB05_13836 [Acinetobacter baumannii AB058]
 gi|301595103|ref|ZP_07240111.1| hypothetical protein AbauAB059_04816 [Acinetobacter baumannii
           AB059]
 gi|213058134|gb|ACJ43036.1| RNA binding S1 domain protein [Acinetobacter baumannii AB0057]
 gi|213985826|gb|ACJ56125.1| Protein tex [Acinetobacter baumannii AB307-0294]
          Length = 782

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  +DD   +      LAE+E      R  
Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712


>gi|126643235|ref|YP_001086219.1| putative RNA binding protein [Acinetobacter baumannii ATCC 17978]
 gi|126389119|gb|ABO13617.1| putative RNA binding protein [Acinetobacter baumannii ATCC 17978]
          Length = 561

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 13/125 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSIT---DVPEVNKIYKGQ--- 626
           I+ Q  A+  +DD   +      LAE+E      R   R+     D+ EV ++ +G    
Sbjct: 366 IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFREDITEVAQLTEGMQLE 425

Query: 627 --VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
             V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  V V+++  D +R ++
Sbjct: 426 GVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQVRVMQVDVERNRV 485

Query: 684 KLSMK 688
            LSM+
Sbjct: 486 NLSMR 490


>gi|28209968|ref|NP_780912.1| hypothetical protein CTC00200 [Clostridium tetani E88]
 gi|28202403|gb|AAO34849.1| ribosomal protein [Clostridium tetani E88]
          Length = 136

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV + +FGAFV   G + GLVHIS++S   V    D +KE D V VK++  D++G
Sbjct: 8   ILEGTVVNITNFGAFVEVDG-KTGLVHISEVSDSYVKDIKDYLKENDKVKVKVISVDEKG 66

Query: 682 KIKLSMKVVD--QNTGKPI 698
           KI LS+K  +  + + +PI
Sbjct: 67  KISLSIKQAEPQKKSCRPI 85


>gi|332653049|ref|ZP_08418794.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332518195|gb|EGJ47798.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 648

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T   +V  +   ++VK+M FGAF       DGL+HISQ++  R+ K  DV+ EGD V VK
Sbjct: 557 TSTYQVGDVANVRIVKLMTFGAFAEIVPGVDGLIHISQIADHRIEKPGDVLAEGDKVDVK 616

Query: 674 LLDFD-DRGKIKLSMK 688
           + D D +  K+ LS++
Sbjct: 617 ITDVDMENKKVSLSIR 632



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  K Y G V  +  +GAFV   G  DG+VHIS+LS  R+   S+VVK GDTV V ++  
Sbjct: 476 EDGKRYTGTVKSLTSYGAFVDI-GGVDGMVHISELSWSRIKHPSEVVKVGDTVDVYVISA 534

Query: 678 D-DRGKIKLSMK 688
           D ++ KI L MK
Sbjct: 535 DPEKKKISLGMK 546


>gi|149190642|ref|ZP_01868910.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1]
 gi|148835525|gb|EDL52494.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1]
          Length = 773

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ E   + +G V  V +FGAFV     +DGLVHIS L+ + VA   +VVK G
Sbjct: 640 EGVNKISDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKFVADPREVVKAG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 699 DIVKVKVMEVDAARKRIGLSMRLNDE 724


>gi|301155420|emb|CBW14886.1| predicted transcriptional accessory protein [Haemophilus
           parainfluenzae T3T1]
          Length = 770

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
            + V     VVK GD V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 685 DKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 731


>gi|291562264|emb|CBL41080.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4]
          Length = 298

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 604 EAAREMIRSITDVP----EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           EAARE  +  T+      EV  + KG V  + D+GAFV       GL+HISQ+ST+R+  
Sbjct: 175 EAAREKKQEETNKKIAKCEVGAVMKGTVETLKDYGAFVELENGLTGLLHISQISTKRIKH 234

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
              V+KEG  V VK++   +  KI LSMK
Sbjct: 235 PGAVLKEGQEVRVKIISTANN-KISLSMK 262


>gi|41582344|gb|AAS07958.1| S1 RNA binding domain protein [uncultured marine bacterium 463]
          Length = 772

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAF+     +DGLVHIS L+ + V    DVVK GD V VK+++ D  R
Sbjct: 653 VLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRVKVMEVDAPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ D+
Sbjct: 713 KRIGLSMRLSDK 724


>gi|22537308|ref|NP_688159.1| 30S ribosomal protein S1 [Streptococcus agalactiae 2603V/R]
 gi|25011274|ref|NP_735669.1| 30S ribosomal protein S1 [Streptococcus agalactiae NEM316]
 gi|76786829|ref|YP_329853.1| 30S ribosomal protein S1 [Streptococcus agalactiae A909]
 gi|22534178|gb|AAN00032.1|AE014244_9 ribosomal protein S1 [Streptococcus agalactiae 2603V/R]
 gi|23095698|emb|CAD46884.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561886|gb|ABA44470.1| ribosomal protein S1 [Streptococcus agalactiae A909]
 gi|319745155|gb|EFV97478.1| 30S ribosomal protein S1 [Streptococcus agalactiae ATCC 13813]
          Length = 400

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LSMK +++
Sbjct: 341 ERVSLSMKALEE 352



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 192 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 250

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 251 DEEAGRVSLSLK 262


>gi|296269654|ref|YP_003652286.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296092441|gb|ADG88393.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
          Length = 784

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 21/155 (13%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIE------------ 604
           +R ++   G  IR ++  TG   +      +DD   +   +  L E+E            
Sbjct: 581 VRRILEATGMGIRSLIGNTGVLRSLDPARFVDDRFGLPTVTDILKELEKPGRDPRPTFTT 640

Query: 605 -AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            A +E + +I D+ +   + +G V  V  FGAFV     +DGLVH+S ++   V    +V
Sbjct: 641 AAFKEGVETIEDL-KPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMADRFVKDPREV 699

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK GD V VK+LD D  R +I L++++ D+   +P
Sbjct: 700 VKPGDIVRVKVLDVDLARKRISLTLRLDDEAARRP 734


>gi|295116041|emb|CBL36888.1| Ribosomal protein S1 [butyrate-producing bacterium SM4/1]
          Length = 311

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  R   R   +  EV  + +G V  + D+GAFV       GLVHIS++S++R+     V
Sbjct: 196 EKERAEKRKKIEKCEVGAVMEGTVDTLKDYGAFVTLENGLSGLVHISRISSQRIKHPGVV 255

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           +KEG TV VK++   D GKI LSMK
Sbjct: 256 LKEGQTVKVKIIGIKD-GKISLSMK 279


>gi|170724523|ref|YP_001758549.1| RNA-binding S1 domain-containing protein [Shewanella woodyi ATCC
           51908]
 gi|169809870|gb|ACA84454.1| RNA binding S1 domain protein [Shewanella woodyi ATCC 51908]
          Length = 802

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 4/94 (4%)

Query: 605 AAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           A +E +  ++D+ PE+  I +G V  V +FGAFV     +DGLVHIS L+ + V+    +
Sbjct: 661 AFKEGVEKVSDLKPEM--ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTI 718

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK GD V VK+++ D +R +I LSM++ ++ + K
Sbjct: 719 VKAGDVVKVKVMEVDAERKRIALSMRLDEKPSEK 752


>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
 gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
          Length = 493

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 216 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMD 274

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 275 RERVSLSLKATQED 288



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FG+FV      +GLVHIS+L+   V     VV+  D V VK++D 
Sbjct: 298 QIGQIVPGKVTKLVPFGSFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDI 357

Query: 678 D-DRGKIKLSMK 688
           D +R +I LS+K
Sbjct: 358 DLERRRISLSLK 369


>gi|262375129|ref|ZP_06068363.1| transcriptional accessory protein [Acinetobacter lwoffii SH145]
 gi|262310142|gb|EEY91271.1| transcriptional accessory protein [Acinetobacter lwoffii SH145]
          Length = 789

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 13/125 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSIT---DVPEVNKIYKGQ--- 626
           I+ Q  A+   D+   +      LAE+E      R   R+     D+ EV ++ +G    
Sbjct: 592 IIRQVNAEEFADEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDDITEVAQLSEGMQLE 651

Query: 627 --VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
             V  V +FGAFV     +DGLVHIS+L+ E VA    VVK G  V V++L+ D +R ++
Sbjct: 652 GVVTNVTNFGAFVDVGVHQDGLVHISELTNEFVADPHKVVKPGQIVQVRVLNVDAERNRV 711

Query: 684 KLSMK 688
            LSM+
Sbjct: 712 NLSMR 716


>gi|283797557|ref|ZP_06346710.1| putative SSU ribosomal protein S1P [Clostridium sp. M62/1]
 gi|291074928|gb|EFE12292.1| putative SSU ribosomal protein S1P [Clostridium sp. M62/1]
 gi|295090842|emb|CBK76949.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10]
          Length = 311

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  R   R   +  EV  + +G V  + D+GAFV       GLVHIS++S++R+     V
Sbjct: 196 EKERAEKRKKIEKCEVGAVMEGTVDTLKDYGAFVTLENGLSGLVHISRISSQRIKHPGVV 255

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           +KEG TV VK++   D GKI LSMK
Sbjct: 256 LKEGQTVKVKIIGIKD-GKISLSMK 279


>gi|254481001|ref|ZP_05094247.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038796|gb|EEB79457.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 772

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAF+     +DGLVHIS L+ + V    DVVK GD V VK+++ D  R
Sbjct: 653 VLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRVKVMEVDAPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ D+
Sbjct: 713 KRIGLSMRLSDK 724


>gi|148827760|ref|YP_001292513.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
 gi|148719002|gb|ABR00130.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
          Length = 770

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
            + V     VVK GD V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 685 DKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 731


>gi|325576610|ref|ZP_08147328.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
 gi|325161173|gb|EGC73288.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
          Length = 772

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 573 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 627

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 628 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 686

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
            + V     VVK GD V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 687 DKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 733


>gi|332969908|gb|EGK08910.1| general stress protein 13 [Desmospora sp. 8437]
          Length = 124

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G+VV +  FGAFV       GLVHISQ+S++ V K  D +  GD+V  K+L  D  G
Sbjct: 9   VVTGEVVAIKPFGAFVKLETGETGLVHISQISSKFVEKVEDELTVGDSVKAKVLSIDSSG 68

Query: 682 KIKLSMKVV 690
           KI LS+K +
Sbjct: 69  KISLSIKAL 77


>gi|257869555|ref|ZP_05649208.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
 gi|257803719|gb|EEV32541.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
          Length = 402

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++  ++ E E  ++    + D+ E  +I +G+V ++ DFGAFV   G  DGLVH+S++S 
Sbjct: 182 LSHKAVVEAEKEKQKEALLADLYEGQEI-EGKVARLTDFGAFVDLGGI-DGLVHVSEISH 239

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             V K SDV+  GDTV V++L  D ++ ++ LS+K
Sbjct: 240 AHVGKPSDVLSVGDTVNVRVLSVDPNKERVSLSIK 274



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GL+HISQ+S + +A   +V+ EGD V VK+L+ +
Sbjct: 290 VGSVLDGVVKRLTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLHEGDQVQVKVLEVN 349

Query: 679 DRG-KIKLSMK 688
               +I LS+K
Sbjct: 350 PTDHRIALSIK 360


>gi|46446398|ref|YP_007763.1| 30S ribosomal protein S1 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400039|emb|CAF23488.1| probable ribosomal protein S1 [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 587

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI     V  + KG+V K+  FGAFV      +GL+H+++LS +   K  DVV +GD V 
Sbjct: 467 SIEKTMPVGSLVKGKVTKITAFGAFVELDSGIEGLIHVTELSDQAFGKVEDVVAKGDEVT 526

Query: 672 VKLLDFD-DRGKIKLSMK--VVDQN 693
            K++  D +  KI LS+K  ++DQN
Sbjct: 527 AKVIKLDPEHKKIALSIKEYLIDQN 551



 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++V ++ +GAF+      +GL+H+S++S  + +   S+VVK+GD V   +L    + GK
Sbjct: 306 GKIVNLLPYGAFIEIEPGIEGLIHVSEMSWVKNITDPSEVVKKGDDVEAIVLSVQKEEGK 365

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 366 ISLGIKQTEHN 376



 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + DFG F+   G  DGL+HI+ ++ +R+   S++V+ G  + V +L  D D+
Sbjct: 218 IREGVVKNITDFGVFLDLDGI-DGLLHITDMTWKRIKHPSEMVQLGQKLEVMILSVDKDK 276

Query: 681 GKIKLSMK 688
           G++ L +K
Sbjct: 277 GRVALGLK 284



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ I K ++  + ++GAFV      +GL+HIS LS  ++V+  S+V+++GD V   +L  
Sbjct: 387 VSNIVKAEIRTLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEVLRKGDVVDAIILSV 446

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  KI L +K +  N  + I
Sbjct: 447 DKESKKITLGVKQLSTNPWESI 468


>gi|303252099|ref|ZP_07338268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248294|ref|ZP_07530320.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649081|gb|EFL79268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855228|gb|EFM87405.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 775

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD 
Sbjct: 649 VEDIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDL 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNT 694
           V VK+L+ D  R +I L+M++ D+ T
Sbjct: 708 VKVKVLEVDVQRKRIALTMRLEDKPT 733


>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 388

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + SI+      ++  G V ++  FG FV   G  DGLVHISQLS E +   S+VV E
Sbjct: 180 KETLHSIS----AGEVVSGTVQRITSFGVFVDIGGV-DGLVHISQLSHEHIETPSEVVSE 234

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V VK+L  D D  +I LS+K
Sbjct: 235 GDEVKVKVLSVDPDNERISLSIK 257



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V +++ FGAFV      +GLVHISQ++   +    +V+KEG+ V  K+LD +
Sbjct: 273 VGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDIN 332

Query: 679 -DRGKIKLSMKVVDQNT 694
            D  +I LS++ +++ T
Sbjct: 333 LDDKRISLSIRALEEET 349



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           V  + KG V KV D  A+V+     DG+V IS+L++  V K  DV+ EG+    K++
Sbjct: 17  VGDVTKGTVSKVEDKQAYVNVGYKMDGVVPISELASLHVEKAGDVINEGEEYEFKVI 73


>gi|313889154|ref|ZP_07822810.1| S1 RNA binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844894|gb|EFR32299.1| S1 RNA binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 125

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V KV  FGAFV     + GLVHIS+++   V   ++ + EGD V VK+L  D++G
Sbjct: 8   IVEGVVTKVAKFGAFVDLEDGKSGLVHISEIADTFVKDINNHISEGDEVKVKVLSIDEKG 67

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 68  KIALSIK 74


>gi|302388400|ref|YP_003824222.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
 gi|302199028|gb|ADL06599.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
          Length = 310

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + D+GAF++      GL+HISQ+S++R+     V+KEG TV VK++  
Sbjct: 207 QVGTVMEGTVDSLKDYGAFINLENGLSGLLHISQISSQRIKHPGVVLKEGQTVKVKIISI 266

Query: 678 DDRGKIKLSMKVV 690
            D  KI LSMK V
Sbjct: 267 ADH-KISLSMKAV 278


>gi|225568606|ref|ZP_03777631.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
           15053]
 gi|225162534|gb|EEG75153.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  + KG V  + ++GAFV       GLVH+SQ+S +RV    DV+  GD V VK++  
Sbjct: 125 KIGSVVKGTVESLQNYGAFVRLEDGLSGLVHVSQISQKRVKAPKDVLNTGDEVTVKIIGL 184

Query: 678 DDRGKIKLSMKVV 690
            D GKI LSMK +
Sbjct: 185 KD-GKISLSMKAL 196


>gi|295111344|emb|CBL28094.1| Ribosomal protein S1 [Synergistetes bacterium SGP1]
          Length = 516

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  + DFG FV+  GA DGLVH+S+++ +R  +  D+ K+GD V VK++  D ++
Sbjct: 219 VLEGEVSSITDFGIFVNLKGAMDGLVHVSEITWKRNVRIRDLYKKGDKVTVKVIGLDKEK 278

Query: 681 GKIKLSMKVV 690
            +I LS+K V
Sbjct: 279 DRISLSIKQV 288



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  K +VV++ +FGAFV      + L+HISQLS  RV K  DV+ EG  V  ++++ +
Sbjct: 391 VGQDLKVKVVRLAEFGAFVEAEEGVEALIHISQLSNRRVEKPGDVLHEGQEVVARMIEVN 450

Query: 679 -DRGKIKLSMKVVDQNT 694
            ++ +++LS+  +++ T
Sbjct: 451 PEQRRMRLSLSALEEPT 467



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + KG V  V DFGAFV      +GL+HI  +S  R+    D  ++G  V V ++D    +
Sbjct: 305 VMKGVVTNVTDFGAFVELEPGIEGLIHIGDISWARIKHPRDTFRKGQEVEVLVMDIALSE 364

Query: 679 DRGKIKLSM 687
           D  K ++S+
Sbjct: 365 DPKKCRISL 373


>gi|170741136|ref|YP_001769791.1| RNA-binding S1 domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168195410|gb|ACA17357.1| RNA binding S1 domain protein [Methylobacterium sp. 4-46]
          Length = 776

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + +I D+ +   + +G V  V  FGAFV     +DGLVHIS LS   V     VVK G
Sbjct: 640 EGVETIGDL-KPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISALSNSFVRDPRAVVKPG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V VK+LD D  R +I L+M++ D    +P
Sbjct: 699 DVVRVKVLDVDVPRKRISLTMRLDDAPQARP 729


>gi|76799531|ref|ZP_00781663.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21]
 gi|76585115|gb|EAO61741.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21]
          Length = 466

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 347 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 406

Query: 681 GKIKLSMKVVDQ 692
            ++ LSMK +++
Sbjct: 407 ERVSLSMKALEE 418



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 258 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 316

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 317 DEEAGRVSLSLK 328


>gi|331090664|ref|ZP_08339513.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400078|gb|EGG79729.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 222

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E  R ++ V EV  + +G V  +  +GAFV       GLVHISQ+S +R+    DV+  
Sbjct: 109 KEKARRLSAV-EVGSVLEGTVESLQTYGAFVRLENDLSGLVHISQISDKRIKSPKDVLSA 167

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           GD V VK++   D GKI LSMK +
Sbjct: 168 GDAVTVKVIGIKD-GKISLSMKAL 190


>gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3]
 gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3]
          Length = 492

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D
Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LS+K  ++ TG
Sbjct: 366 LDRRRISLSLKQANEATG 383



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 282 RERVSLSLKATQEDPWR 298


>gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
 gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
          Length = 405

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V ++  FGAFV   G  DGLVH+S+++   V K +DV+ EGD V VK+L  D +
Sbjct: 200 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWSHVEKPADVLSEGDQVRVKVLKVDPE 258

Query: 680 RGKIKLSMK 688
           +GKI LS+K
Sbjct: 259 KGKISLSIK 267



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V +++ FGAFV      +GLVHISQ+S + +    +V+KEG  V VK+LD +   
Sbjct: 286 IVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSE 345

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 346 QRVSLSIK 353


>gi|210630872|ref|ZP_03296646.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
 gi|210160306|gb|EEA91277.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
          Length = 835

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  RSI D+ EV    KG V  V+DFGAFV     +DGLVHIS+L+   V   S+VV  G
Sbjct: 749 QAARSIEDL-EVGMELKGTVRNVVDFGAFVDIGVHQDGLVHISKLADRFVKHPSEVVAVG 807

Query: 668 D--TVWVKLLDFDDRGKIKLSM 687
           D  TVWV  +D   R KI L+M
Sbjct: 808 DTVTVWVTGVD-RTRKKISLTM 828


>gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614]
 gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614]
          Length = 490

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 215 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 273

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 274 RERVSLSLKATQED 287



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D V VK++D 
Sbjct: 297 QIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDI 356

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I LS+K  ++ 
Sbjct: 357 DLERRRISLSLKQANET 373


>gi|225420174|ref|ZP_03762477.1| hypothetical protein CLOSTASPAR_06517 [Clostridium asparagiforme
           DSM 15981]
 gi|225041231|gb|EEG51477.1| hypothetical protein CLOSTASPAR_06517 [Clostridium asparagiforme
           DSM 15981]
          Length = 259

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  + ++GAF+      DGL+H+SQ+ST+R+     V+KEG +V VK+L   D G
Sbjct: 158 VVEGTVDSLKNYGAFIKLADGVDGLLHVSQISTQRIKHPGVVLKEGQSVKVKILSVAD-G 216

Query: 682 KIKLSMKVV 690
           KI LSMK +
Sbjct: 217 KISLSMKAL 225


>gi|77412572|ref|ZP_00788862.1| ribosomal protein S1 [Streptococcus agalactiae CJB111]
 gi|77161374|gb|EAO72395.1| ribosomal protein S1 [Streptococcus agalactiae CJB111]
          Length = 332

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 213 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 272

Query: 681 GKIKLSMKVVDQ 692
            ++ LSMK +++
Sbjct: 273 ERVSLSMKALEE 284



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 124 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 182

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 183 DEEAGRVSLSLK 194


>gi|283798175|ref|ZP_06347328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
           M62/1]
 gi|291074158|gb|EFE11522.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
           M62/1]
 gi|295091663|emb|CBK77770.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10]
          Length = 375

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  K++DF+
Sbjct: 280 VGSVVEGKVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSVGQVIKAKVVDFN 339

Query: 679 --DRGKIKLSMKVVDQ 692
             DR KI LS+K ++ 
Sbjct: 340 EADR-KISLSIKALEN 354



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +E    M + + +  EV +  +G V  V DFGAF+   GA DGL+HIS++S  RV     
Sbjct: 181 MEKKAAMQKELFERIEVGQTVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 239

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V K G+TV   + D +   KI LS+K  + N
Sbjct: 240 VFKVGETVKALIKDINGE-KIALSLKFPETN 269


>gi|297571464|ref|YP_003697238.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931811|gb|ADH92619.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
           20595]
          Length = 489

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           ++++  G+V K++ FGAFV      +GLVHIS+L+   V     VVK GD V+VK++D D
Sbjct: 292 ISQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGDDVFVKVIDID 351

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 352 LDRRRISLSLKQANE 366



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQV-----VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV       +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 202 LNTLQKGQVRDGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGTPVTVE 260

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L+ D DR ++ LS+K   ++
Sbjct: 261 VLEVDMDRERVSLSLKATQED 281


>gi|257438775|ref|ZP_05614530.1| general stress protein 13 [Faecalibacterium prausnitzii A2-165]
 gi|257198779|gb|EEU97063.1| general stress protein 13 [Faecalibacterium prausnitzii A2-165]
          Length = 108

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V  V  FGAFV     + G+VHIS++S E V   + V+ +GD V V++++ 
Sbjct: 4   EVGNVLEGRVTGVKPFGAFVALPEGKSGMVHISEVSNEYVQDINTVLHDGDAVKVQVINI 63

Query: 678 DDRGKIKLSMK 688
              GKI LS+K
Sbjct: 64  APDGKIALSIK 74


>gi|242082121|ref|XP_002445829.1| hypothetical protein SORBIDRAFT_07g026490 [Sorghum bicolor]
 gi|241942179|gb|EES15324.1| hypothetical protein SORBIDRAFT_07g026490 [Sorghum bicolor]
          Length = 1071

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 8/86 (9%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF-CGA--RDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE+N++ +G++ +V D G FV    GA  R+GLVH+SQ+   R A     V  G  V+VK
Sbjct: 117 PELNQVRRGRITRVGDAGCFVRLGAGARGREGLVHVSQMPGGRRA----TVTRGQEVFVK 172

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++  D   K+ LSM+ VDQ+TG+ ++
Sbjct: 173 VVSVDG-AKLGLSMRDVDQDTGRDLL 197


>gi|329118647|ref|ZP_08247351.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465382|gb|EGF11663.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 789

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS   V    ++VK GD V VK+L+ 
Sbjct: 665 QIGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDRFVQDPREIVKAGDVVKVKVLEV 724

Query: 678 D-DRGKIKLSMKVVD 691
           D +R +I L+M++ D
Sbjct: 725 DAERKRIALTMRLSD 739


>gi|77414872|ref|ZP_00790982.1| ribosomal protein S1 [Streptococcus agalactiae 515]
 gi|77159073|gb|EAO70274.1| ribosomal protein S1 [Streptococcus agalactiae 515]
          Length = 339

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 220 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 279

Query: 681 GKIKLSMKVVDQ 692
            ++ LSMK +++
Sbjct: 280 ERVSLSMKALEE 291



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 131 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 189

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 190 DEEAGRVSLSLK 201


>gi|307265004|ref|ZP_07546565.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919989|gb|EFN50202.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 144

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DANGRISLSIK 74


>gi|240169473|ref|ZP_04748132.1| transcriptional accessory protein Tex [Mycobacterium kansasii ATCC
           12478]
          Length = 753

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++ I D+ +V  + +G V  V  FGAFV     +DGLVH+S ++   VA   DVV+ G  
Sbjct: 628 VQKIADL-KVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMAERFVADPHDVVRSGQV 686

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           V VK++D D +R +I LS+++ D    +P+
Sbjct: 687 VRVKVIDVDVERRRIGLSLRLNDDPQRQPV 716


>gi|127514562|ref|YP_001095759.1| RNA-binding S1 domain-containing protein [Shewanella loihica PV-4]
 gi|126639857|gb|ABO25500.1| RNA binding S1 domain protein [Shewanella loihica PV-4]
          Length = 787

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 3/91 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS L+ + V+    VVK 
Sbjct: 640 KEGVEEIKDL-KVEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFVSDPHTVVKA 698

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V VK+++ D +R +I L+M+ +D+  G+
Sbjct: 699 GDVVKVKVMEVDAERKRISLTMR-LDEKPGE 728


>gi|294651819|ref|ZP_06729113.1| YhgF family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822283|gb|EFF81192.1| YhgF family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 784

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A+  +DD   +      LAE+E      R  
Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPH 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712


>gi|256391527|ref|YP_003113091.1| RNA binding S1 domain-containing protein [Catenulispora acidiphila
           DSM 44928]
 gi|256357753|gb|ACU71250.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928]
          Length = 838

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ +   I +G V  V  FGAFV     +DGLVHIS LS   V    DVVK 
Sbjct: 648 KEGVEKIGDL-QPGMILEGVVTNVAAFGAFVDVGVHQDGLVHISALSKTFVKDPRDVVKP 706

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 707 GDVVRVKVLDVDAVRKRIALTLRLDDE 733


>gi|332763610|gb|EGJ93849.1| transcriptional accessory protein [Shigella flexneri 2930-71]
 gi|333013052|gb|EGK32428.1| protein yhgF [Shigella flexneri K-227]
          Length = 834

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|317495376|ref|ZP_07953745.1| S1 RNA binding domain-containing protein [Gemella moribillum M424]
 gi|316914435|gb|EFV35912.1| S1 RNA binding domain-containing protein [Gemella moribillum M424]
          Length = 404

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 8/86 (9%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E AR  I+       V  + +G V     FGAFV      +GLVHISQLS ERV    DV
Sbjct: 284 EVARATIK-------VGDVLEGVVRNTTAFGAFVEVMDDVEGLVHISQLSHERVDNVEDV 336

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +K+GD V VK+LD D +  ++ LS+K
Sbjct: 337 LKKGDKVTVKVLDIDFENERLSLSIK 362



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           + E E A+++     ++ E   + +G+V ++ DFGAF++  G  DGL+HIS++S  RV+K
Sbjct: 189 ILEEERAKKLAEVYGNINE-GDVIEGKVSRITDFGAFINL-GEVDGLLHISEISHARVSK 246

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            SDV+  GD V V ++  D +  KI LS K +
Sbjct: 247 VSDVLAVGDVVKVAVISVDKENEKISLSAKTL 278


>gi|237785763|ref|YP_002906468.1| putative transcriptional accessory protein [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758675|gb|ACR17925.1| putative transcriptional accessory protein [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 750

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I  ++D+     + +G V  V  FGAFV     +DGLVH+S +S   V+   DVVK 
Sbjct: 595 KEGIEKVSDLTP-GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSDRFVSDPHDVVKS 653

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK++D D DR +I LS+++ D+
Sbjct: 654 GQVVRVKVMDVDTDRQRIGLSLRLNDE 680


>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
 gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
          Length = 493

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   +   VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|89094331|ref|ZP_01167272.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Oceanospirillum sp.
           MED92]
 gi|89081390|gb|EAR60621.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Oceanospirillum sp.
           MED92]
          Length = 714

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + +ITD+ +V    +G +  V +FGAFV     +DGLVHISQL+ + V    DVV  G  
Sbjct: 633 VETITDL-QVGMRLEGTISNVTNFGAFVDLGVHQDGLVHISQLANKFVKDPHDVVSPGQI 691

Query: 670 VWVKLLDFDD-RGKIKLSMKVVD 691
           V V++L+ D+ R +I L+M+  D
Sbjct: 692 VTVRVLEVDEKRKRISLTMRTAD 714


>gi|325123755|gb|ADY83278.1| RNA binding S1 [Acinetobacter calcoaceticus PHEA-2]
          Length = 782

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A   +DD   +      LAE+E      R  
Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTVQDVLAELEKPGRDPRPE 623

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      +  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 624 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712


>gi|320546631|ref|ZP_08040943.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
 gi|320448686|gb|EFW89417.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
          Length = 398

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+LD + D 
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVGNPKDVLSVGQEVKVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I KG+V ++  FGAFV   G  DGLVH+++LS ER      VV  G+ + VK+L  
Sbjct: 192 EEGSIVKGKVARLTSFGAFVDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEIEVKVLSI 250

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 251 DEEAGRVSLSLK 262


>gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
 gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
          Length = 487

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G  V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSVKQADED 366


>gi|220930900|ref|YP_002507808.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
 gi|219992210|gb|ACL68813.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
          Length = 124

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G+V  +  FGAFV   G   GL+HIS+++   V    + +K+ DTV VK+++ 
Sbjct: 4   DVGSTVEGKVTGITKFGAFVELPGGDTGLIHISEIANTYVKDVGNYLKKNDTVKVKVINI 63

Query: 678 DDRGKIKLSMKVVDQ 692
           D  GKI LS+K +D 
Sbjct: 64  DKDGKIGLSIKRLDN 78


>gi|150017403|ref|YP_001309657.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium beijerinckii NCIMB 8052]
 gi|149903868|gb|ABR34701.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 635

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG+V +  DFGAFV   G  DGL+H+SQ+S   + K SDV+KEG  + VK++  D   
Sbjct: 481 VIKGEVKRFTDFGAFVEVNGI-DGLLHLSQISWNHIKKVSDVLKEGQIIDVKIIGLDKEA 539

Query: 682 KIKLSMKV 689
           K KLS+ +
Sbjct: 540 K-KLSLSI 546



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G+VV++ DFGAFV      DGLVHIS++S  R+   S+V+K G+ +  K+L  D+  K I
Sbjct: 569 GKVVRLNDFGAFVELEPGVDGLVHISKISHNRIEHPSEVLKIGEEIKAKILSVDEENKRI 628

Query: 684 KLSMKVV 690
            LS+K V
Sbjct: 629 SLSIKDV 635


>gi|333012576|gb|EGK31957.1| protein yhgF [Shigella flexneri K-304]
          Length = 834

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|332749494|gb|EGJ79911.1| protein yhgF [Shigella flexneri K-671]
          Length = 833

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|291557518|emb|CBL34635.1| Transcriptional accessory protein [Eubacterium siraeum V10Sc8a]
          Length = 713

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 614 TDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++N      I  G V  V+DFG FV     +DGLVHISQ+  + +    +VVK GD
Sbjct: 631 TDVADINSLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVGD 690

Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690
            V VK+LD D  + +I L+MK V
Sbjct: 691 IVKVKVLDIDPAKKRISLTMKGV 713


>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 482

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G  + VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
 gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
          Length = 484

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N ++KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 205 LNNLHKGQVRKGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVE 263

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L+ D DR ++ LS+K   ++
Sbjct: 264 ILEVDLDRERVSLSLKATQED 284



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+LS + V     VV  G+ V+VK++D D
Sbjct: 295 IGQIAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGEEVFVKIIDID 354

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 355 LERRRISLSLKQANES 370


>gi|296123806|ref|YP_003631584.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016146|gb|ADG69385.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
          Length = 557

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V K   G+V ++ DFGAF+      +G++HIS+L  +RV + +DV+KEG  V  ++L+  
Sbjct: 433 VGKTVTGKVTRITDFGAFIELEPGVEGMIHISELDYKRVKRVADVLKEGQQVDAQVLEIQ 492

Query: 679 -DRGKIKLSMKVV 690
            +R +I LS+K +
Sbjct: 493 PERQRISLSVKAL 505



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E   S  D  EV + + G +  + D+GAFV   G  DG +H+ ++S  R+   +D V+E
Sbjct: 336 KEAAASFWDKVEVGQKFTGTIKTIKDYGAFVDLGGV-DGFLHVGEMSWTRIKHPTDCVRE 394

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             TV V +L  D ++ KI L M+ + QN
Sbjct: 395 QQTVDVVVLSLDREKQKIGLGMRQLVQN 422


>gi|167749865|ref|ZP_02421992.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702]
 gi|167657177|gb|EDS01307.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702]
          Length = 713

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 614 TDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++N      I  G V  V+DFG FV     +DGLVHISQ+  + +    +VVK GD
Sbjct: 631 TDVADINSLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVGD 690

Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690
            V VK+LD D  + +I L+MK V
Sbjct: 691 IVKVKVLDIDPAKKRISLTMKGV 713


>gi|37524230|ref|NP_927574.1| hypothetical protein plu0210 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783653|emb|CAE12505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 776

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D +R
Sbjct: 652 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNRFVEDPHTVVKAGDIVKVKVLEVDLNR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|239907284|ref|YP_002954025.1| putative 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
 gi|239797150|dbj|BAH76139.1| putative 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
          Length = 492

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL+  +A  +   S+ D   V    +G+VV++ DFGAFV      +GL+H+S++S   RV
Sbjct: 271 SLSIKQAGADPWDSVGDQFNVGDKVEGKVVRLADFGAFVEIAPGIEGLIHVSEMSHVRRV 330

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           AK  DVV  GD V V + D D  + +I LS+K
Sbjct: 331 AKPGDVVAAGDAVTVSIKDIDLSKRRIGLSLK 362



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD----DRGK 682
           + +++ FGAF       +GL+H+S+LS  R  K  D V  G+ V VK+L FD     R +
Sbjct: 210 ISRLVAFGAFAEVAPGLEGLIHLSELSWSRAEKAEDAVTPGEAVTVKVLAFDRDKKGRPR 269

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 270 ISLSIK 275


>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
 gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|77406676|ref|ZP_00783718.1| ribosomal protein S1 [Streptococcus agalactiae H36B]
 gi|77174717|gb|EAO77544.1| ribosomal protein S1 [Streptococcus agalactiae H36B]
          Length = 358

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 237 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDA 296

Query: 681 GKIKLSMKVVDQ 692
            ++ LSMK +++
Sbjct: 297 ERVSLSMKALEE 308



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 148 EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSI 206

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 207 DEEAGRVSLSLK 218


>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
          Length = 486

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     +V  G+ V VK++D D
Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQIVNVGEEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|291538052|emb|CBL11163.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4]
          Length = 303

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +M +GAF++      GLVHISQ+   R+ K S+V+KEG  V VK+++ +D  
Sbjct: 197 VMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKVKVVNTNDN- 255

Query: 682 KIKLSMKVVDQ 692
           KI LSMK + +
Sbjct: 256 KISLSMKALQE 266


>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
          Length = 488

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ V VK++D D
Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVNVGEEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS]
 gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS]
 gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS]
 gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS]
 gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS]
 gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS]
          Length = 479

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|124266982|ref|YP_001020986.1| putative transcription accessory protein [Methylibium
           petroleiphilum PM1]
 gi|124259757|gb|ABM94751.1| putative transcription accessory protein [Methylibium
           petroleiphilum PM1]
          Length = 793

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVH+SQL+ + V    ++VK GD V VK+L+ D  RG+
Sbjct: 670 EGTVSNVAQFGAFVDLGVHQDGLVHVSQLANKFVNDAREIVKTGDIVKVKVLEVDLARGR 729

Query: 683 IKLSMKV 689
           I L+MK+
Sbjct: 730 ISLTMKL 736


>gi|317470286|ref|ZP_07929680.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
           sp. 3_2_56FAA]
 gi|316902259|gb|EFV24179.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
           sp. 3_2_56FAA]
          Length = 633

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K++DF
Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610

Query: 678 -DDRGKIKLSMKVV 690
             D  KI LSMK +
Sbjct: 611 KKDEKKISLSMKAL 624



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V  V DFGAF+   GA DGL+HIS++S  RV     V   GD V V + D     KI 
Sbjct: 475 GVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFSIGDKVTVLIKDIQGE-KIA 532

Query: 685 LSMKVVDQN 693
           LS+K  ++N
Sbjct: 533 LSLKFPEEN 541


>gi|293610676|ref|ZP_06692976.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827020|gb|EFF85385.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 794

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A   +DD   +      LAE+E      R  
Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTVQDVLAELEKPGRDPRPE 635

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      +  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 636 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724


>gi|218708217|ref|YP_002415838.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32]
 gi|218321236|emb|CAV17186.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32]
          Length = 776

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD 
Sbjct: 642 VNSMSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724


>gi|148976495|ref|ZP_01813191.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3]
 gi|145964071|gb|EDK29328.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3]
          Length = 776

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + S++D+ E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD 
Sbjct: 642 VNSVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724


>gi|86146555|ref|ZP_01064877.1| hypothetical protein MED222_18163 [Vibrio sp. MED222]
 gi|85835612|gb|EAQ53748.1| hypothetical protein MED222_18163 [Vibrio sp. MED222]
          Length = 776

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD 
Sbjct: 642 VNSMSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724


>gi|332530544|ref|ZP_08406482.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624]
 gi|332039990|gb|EGI76378.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624]
          Length = 796

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK GD V VK+L+ D  R
Sbjct: 677 VLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDIVKVKVLEVDLAR 736

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+MK +D    +P
Sbjct: 737 QRISLTMK-LDAAVARP 752


>gi|325660733|ref|ZP_08149361.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472807|gb|EGC76017.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 222

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A E  + + ++P V  +  G V  +  +GAF+       GLVH+SQ+  +R+   +DV
Sbjct: 106 EQAAERAKKVQEIP-VGSVLSGTVDSLQSYGAFILLENGLSGLVHVSQICEKRIKSPADV 164

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMK 688
           +K G+ V VK++   D GKI LSMK
Sbjct: 165 LKTGEEVQVKVIGIKD-GKISLSMK 188


>gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 486

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G  V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSVKQADED 366


>gi|164687095|ref|ZP_02211123.1| hypothetical protein CLOBAR_00721 [Clostridium bartlettii DSM
           16795]
 gi|164603980|gb|EDQ97445.1| hypothetical protein CLOBAR_00721 [Clostridium bartlettii DSM
           16795]
          Length = 724

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G V+K     V+DFGAFV      DGLVH SQ+S + V    ++V  GD
Sbjct: 643 TDVLKIEDIKEGMVLKGTVRNVVDFGAFVDIGIKNDGLVHKSQMSNKFVKDPMEIVSVGD 702

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
            + VK++  D D+G++ LSMK+
Sbjct: 703 VIDVKVIGIDLDKGRVSLSMKL 724


>gi|291531019|emb|CBK96604.1| Transcriptional accessory protein [Eubacterium siraeum 70/3]
          Length = 713

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 614 TDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++N      I  G V  V+DFG FV     +DGLVHISQ+  + +    +VVK GD
Sbjct: 631 TDVADINSLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVGD 690

Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690
            V VK+LD D  + +I L+MK V
Sbjct: 691 IVKVKVLDIDPAKKRISLTMKGV 713


>gi|317153562|ref|YP_004121610.1| RNA-binding S1 domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943813|gb|ADU62864.1| RNA binding S1 domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 479

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 11/113 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +EQT      D  G +KI   SL+  E A++   +I           G+VV++ DFGAFV
Sbjct: 251 IEQT------DKPGRLKI---SLSMKELAQDPWDTIASTFAEGDKVTGKVVRLADFGAFV 301

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
                 DGLVH+S++S T+RV K +D V EG  V VK+   D +  +I LSMK
Sbjct: 302 EIAPGVDGLVHVSEMSYTKRVNKPADFVSEGQQVAVKIKSIDPQTRRIGLSMK 354



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-----DFD 678
           +G V ++  FGAFV      DGLVH+SQ+S  R+    + V  G  +  K++     D  
Sbjct: 198 EGTVTRLAPFGAFVEIMPGLDGLVHVSQISHARIGHPEEAVTVGQKIKAKIVGIEQTDKP 257

Query: 679 DRGKIKLSMKVVDQN 693
            R KI LSMK + Q+
Sbjct: 258 GRLKISLSMKELAQD 272


>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 208

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           S FI      I+    G  E   Y   +    R      Y+  P +  E  R G P RR 
Sbjct: 4   SAFIEWGGNKIIAAVYGPHE--AYPKHVQEADRAIVRARYSMAPFSVDERKRPG-PDRRA 60

Query: 399 IGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           I   ++   A+  V+    ++P T + +  E+ ++D  + +A +  +SLAL DAG+P+  
Sbjct: 61  IELSKVISEALESVI-FVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRD 119

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA--GTDSGITAMQMD 506
            + G A G +   DD ++L D++ +ED+ G  D  +A       I  +QMD
Sbjct: 120 LIVGCAAGKI---DDVVVL-DLNKEEDNFGQADVPMAIMPRTKEIALLQMD 166


>gi|331654984|ref|ZP_08355983.1| protein YhgF [Escherichia coli M718]
 gi|331046999|gb|EGI19077.1| protein YhgF [Escherichia coli M718]
          Length = 773

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHSVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|302391808|ref|YP_003827628.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203885|gb|ADL12563.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
           arabaticum DSM 5501]
          Length = 676

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G++ K +DFGAF+      +GL+HISQLS   VA T +VV  GD V  K+++ + D
Sbjct: 558 EVISGKITKTVDFGAFMEIESGVEGLIHISQLSHRHVANTEEVVTAGDEVEAKIINIEPD 617

Query: 680 RGKIKLSMK 688
             K+ LS+K
Sbjct: 618 ERKVGLSLK 626



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G+V K++DFGAFV   G  +GL+HIS++S  R+   SDV++E     VK+L  
Sbjct: 470 EEGEVIEGRVTKLVDFGAFVDIGGV-EGLLHISEMSWGRIDHPSDVLEEAQETEVKVLGV 528

Query: 678 D-DRGKIKLSMKVV 690
             +  +I L +K +
Sbjct: 529 KPEEERISLGLKQI 542


>gi|115377075|ref|ZP_01464291.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
 gi|115365914|gb|EAU64933.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 641

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +G+VV++  FGAFV      DGLVHIS LS  R+A   DVV+ G+T+WV +   D
Sbjct: 438 QGKVVRLQQFGAFVELRPGVDGLVHISALSDRRIAHPRDVVQVGETIWVAIEKID 492



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P+V ++  G+V ++  +G F+ F G + GL+  ++  T+R          G  V V +LD
Sbjct: 531 PKVGQVVTGKVDRIEPYGVFLAFPGGK-GLIPAAETGTDRGTDLRKHFSLGQEVKVAILD 589

Query: 677 FDDRGKIKLSM 687
            D  GKI+LS+
Sbjct: 590 IDASGKIRLSI 600


>gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
 gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
          Length = 243

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 26/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++ +R +  Q   L    GS L   G+T+ I   T+    +E+      G+ + 
Sbjct: 3   RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATV----EEKVPPFQKGSGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP ATG     EV+R G  + R +   RL  RA+  V+        T+ I  
Sbjct: 59  WVTAEYGMLPRATGTRTQREVTR-GKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             PI + +A +++G V  G+   +L
Sbjct: 118 DVIQADGGTRTASITGAFVALKDACRRLLKNKQIQKDPIIEALAAVSVGKVA-GE---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T  G    +Q   +      + +   L+ A++G   ++   
Sbjct: 174 LDLAYEEDAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQ 233

Query: 536 SKVLSES 542
           ++ L+ES
Sbjct: 234 NQALAES 240


>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens
           YS-314]
 gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
          Length = 485

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|310821331|ref|YP_003953689.1| ribosomal protein S1 family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394403|gb|ADO71862.1| Ribosomal protein S1 family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 640

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +G+VV++  FGAFV      DGLVHIS LS  R+A   DVV+ G+T+WV +   D
Sbjct: 437 QGKVVRLQQFGAFVELRPGVDGLVHISALSDRRIAHPRDVVQVGETIWVAIEKID 491



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P+V ++  G+V ++  +G F+ F G + GL+  ++  T+R          G  V V +LD
Sbjct: 530 PKVGQVVTGKVDRIEPYGVFLAFPGGK-GLIPAAETGTDRGTDLRKHFSLGQEVKVAILD 588

Query: 677 FDDRGKIKLSM 687
            D  GKI+LS+
Sbjct: 589 IDASGKIRLSI 599


>gi|167748874|ref|ZP_02421001.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662]
 gi|167651844|gb|EDR95973.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662]
          Length = 633

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K++DF
Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610

Query: 678 -DDRGKIKLSMKVV 690
             D  KI LSMK +
Sbjct: 611 KKDEKKISLSMKAL 624



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V  V DFGAF+   GA DGL+HIS++S  RV     V   GD V V + D     KI 
Sbjct: 475 GVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFSIGDKVTVLIKDIQGE-KIA 532

Query: 685 LSMKVVDQN 693
           LS+K  ++N
Sbjct: 533 LSLKFPEEN 541


>gi|154496227|ref|ZP_02034923.1| hypothetical protein BACCAP_00512 [Bacteroides capillosus ATCC
           29799]
 gi|150274310|gb|EDN01387.1| hypothetical protein BACCAP_00512 [Bacteroides capillosus ATCC
           29799]
          Length = 150

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+V  +  FGAFV     + GLVHIS+++   V    D +KEG  V VK++  D
Sbjct: 5   VGSILEGKVTGLTKFGAFVSLPEGKSGLVHISEIAYSYVNDVKDYLKEGQEVKVKVIGID 64

Query: 679 DRGKIKLSMK 688
           + G+I LS+K
Sbjct: 65  ENGRINLSIK 74


>gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4]
 gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4]
          Length = 454

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++  R ++ +   L+   GS L   GDT+ I   T+ TR        L G   
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETR----VPRFLKGMGS 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E ++ G  S R +   RL  R++   +   A    ++ + 
Sbjct: 57  GWVHAEYSMLPRATNTRNIREAAK-GKLSGRTMEIQRLIARSLRSSIDLEALGERSITVD 115

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGD---D 472
            ++ ++DG +  A++ G+ +A       L+D+G     PI + VA I++G++KDG+   D
Sbjct: 116 CDVIQADGGTRTASITGAFVALKLAIQTLLDSGELTESPIKENVAAISVGILKDGEAVLD 175

Query: 473 FIILSDISGDED------HLGH-MDFKVAGTDSGITAMQMDMKI----GGISENIMVM-- 519
              L D S + D       LG  ++ +  G +S  ++ Q+ + +     GI+E I V   
Sbjct: 176 LNYLEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDD 235

Query: 520 ALQQA 524
           A QQA
Sbjct: 236 AFQQA 240


>gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
          Length = 486

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G  V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSVKQADED 366


>gi|297205893|ref|ZP_06923288.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
 gi|297149019|gb|EFH29317.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
          Length = 402

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G+V  +  FGAFV       GLVH+S++S +RV K SDV+K G+TV VK+L  + D
Sbjct: 284 EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPD 343

Query: 680 RGKIKLSMK 688
             +I LS+K
Sbjct: 344 EKRISLSIK 352



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           I +G+V ++ +FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++   DDR
Sbjct: 200 IVEGKVSRLTNFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 259 HRISLSIK 266


>gi|314934139|ref|ZP_07841500.1| S1 RNA binding domain protein [Staphylococcus caprae C87]
 gi|313653044|gb|EFS16805.1| S1 RNA binding domain protein [Staphylococcus caprae C87]
          Length = 716

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ E  K+  G V  V+DFGAF+     +DGLVH+S+LS + V    D+V  GD V 
Sbjct: 636 SIEDLNEGMKL-NGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 672 VKLLDFD-DRGKIKLSM 687
           V +LD D ++GK+ L+M
Sbjct: 695 VWILDIDENKGKVSLTM 711


>gi|306820494|ref|ZP_07454127.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551408|gb|EFM39366.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 714

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V++FGAFV      DGLVHISQLS + +    +VV  GD V VK++  D DR
Sbjct: 645 ILKGTVRNVLEFGAFVDIGVKNDGLVHISQLSDKFIKNPMEVVSIGDIVNVKVIGIDLDR 704

Query: 681 GKIKLSMK 688
            K+ L+M+
Sbjct: 705 KKVSLTMR 712


>gi|284923399|emb|CBG36493.1| putative transcription accessory protein [Escherichia coli 042]
          Length = 773

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|283778165|ref|YP_003368920.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM
           6068]
 gi|283436618|gb|ADB15060.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068]
          Length = 502

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E++ SI     +  + +G V K+ DFGAFV   G  DGL+HISQ+S +R+   S+++
Sbjct: 283 AKKELMASIA----IGDMREGVVRKIQDFGAFVDMGGI-DGLIHISQMSWDRIKHPSEIL 337

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688
            EG  V V++   D + GKI LS++
Sbjct: 338 TEGQKVRVRIEKIDPETGKIGLSLR 362



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I KG V ++  FGAFV      +GL+HIS+L+  RV    +VVKEG  V VK+L   
Sbjct: 378 VGSIVKGTVSRLAAFGAFVKLSPGVEGLIHISELAHNRVYAVQNVVKEGQEVEVKILTVS 437

Query: 679 -DRGKIKLSMKVVDQNTGK 696
            +  +I LS+K   Q   K
Sbjct: 438 AEDQRISLSLKATLQAPAK 456


>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
 gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
          Length = 410

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 56/86 (65%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+E+   +    +   + +G+V ++ +FGAF+   G  DGLVH+S++S + V K SDV
Sbjct: 190 EAAKEIFAKL----QPGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPSDV 244

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ G  V VK+L+ D +R +I LS+K
Sbjct: 245 LEAGQEVKVKVLNVDPERERISLSIK 270



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G  V VK+L+ D + 
Sbjct: 289 VLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEH 348

Query: 681 GKIKLSMKVVDQ 692
            ++ LSMK +++
Sbjct: 349 QRLGLSMKALEE 360


>gi|240144542|ref|ZP_04743143.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
 gi|257203431|gb|EEV01716.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
          Length = 303

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +M +GAF++      GLVHISQ+   R+ K S+V+KEG  V VK+++ +D  
Sbjct: 197 VMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKVKVVNTNDN- 255

Query: 682 KIKLSMKVVDQ 692
           KI LSMK + +
Sbjct: 256 KISLSMKALQE 266


>gi|160936761|ref|ZP_02084127.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440253|gb|EDP17999.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
           BAA-613]
          Length = 258

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +  +GAF+      DGL+HISQ+ST+R+   S V+ EG TV VK+L   + G
Sbjct: 157 VVEGTVDSIKPYGAFIKLDDGVDGLLHISQISTQRIKHPSAVLTEGQTVKVKILSAQE-G 215

Query: 682 KIKLSMKVVDQN 693
           K+ LSMKV+ + 
Sbjct: 216 KLSLSMKVLAEQ 227


>gi|323189004|gb|EFZ74288.1| protein yhgF [Escherichia coli RN587/1]
          Length = 773

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|281180439|dbj|BAI56769.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 740

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|256851010|ref|ZP_05556399.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
 gi|260661222|ref|ZP_05862136.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
 gi|282932037|ref|ZP_06337495.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
 gi|256616072|gb|EEU21260.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
 gi|260548159|gb|EEX24135.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
 gi|281303804|gb|EFA95948.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
          Length = 402

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G+V  +  FGAFV       GLVH+S++S +RV K SDV+K G+TV VK+L  + D
Sbjct: 284 EVVEGEVKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPD 343

Query: 680 RGKIKLSMK 688
             +I LS+K
Sbjct: 344 EKRISLSIK 352



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           I +G+V ++ +FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++   DDR
Sbjct: 200 IVEGKVSRLTNFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGIDDDR 258

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 259 HRISLSIK 266


>gi|293412824|ref|ZP_06655492.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468471|gb|EFF10964.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 773

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|241764598|ref|ZP_04762614.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN]
 gi|241365961|gb|EER60587.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN]
          Length = 789

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G
Sbjct: 653 EGVEDIKDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVNDAREVVKTG 711

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V VK+++ D +R +I LSMK+
Sbjct: 712 DIVKVKVMEVDVERKRIGLSMKL 734


>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
 gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
          Length = 403

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D  D
Sbjct: 285 IFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPND 344

Query: 680 RGKIKLSMK 688
           R +I LS+K
Sbjct: 345 R-RISLSIK 352



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FG+F+   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 197 VGDVVEGKVSRLTNFGSFIDVGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 255

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 256 NDRHRISLSIK 266


>gi|315634955|ref|ZP_07890236.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
 gi|315476217|gb|EFU66968.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
          Length = 771

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G
Sbjct: 640 EGVEEITDL-KAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
           D V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 699 DVVKVKVLEVDVARRRIALTMRLDESAVKNDGK 731


>gi|312968283|ref|ZP_07782493.1| protein yhgF [Escherichia coli 2362-75]
 gi|312287108|gb|EFR15018.1| protein yhgF [Escherichia coli 2362-75]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
 gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
          Length = 402

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G +  V DFGAFV   GA DGLVH+S++S  RV   S+V+  GD V V +L  D DR
Sbjct: 231 VRTGTISSVCDFGAFVDIGGA-DGLVHLSEISWSRVKHPSEVLHPGDKVQVSILSVDHDR 289

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 290 KRIALSIK 297



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I +G + ++  FGAF       +GL+HIS++  ER+    +V+ EGDT+  +++  
Sbjct: 312 QLGQIVEGTITQLASFGAFARIEDGIEGLIHISEMGDERIQHPKEVIAEGDTIQARIIRI 371

Query: 678 DD-RGKIKLSMKV 689
           D  R ++ LS+++
Sbjct: 372 DPARKRMGLSLRL 384


>gi|239624552|ref|ZP_04667583.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520938|gb|EEQ60804.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 258

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +  +GAF+      DGL+HISQ+ST+R+     V+ EG TV VK+L  D+ G
Sbjct: 157 VVEGTVDSIKPYGAFIKLDEGVDGLLHISQISTQRIKHPGAVLTEGQTVKVKILSTDN-G 215

Query: 682 KIKLSMKVVDQNTG 695
           K+ LSM+ + + T 
Sbjct: 216 KLSLSMRALAEQTA 229


>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 401

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ DFG+FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 196 VGDVVEGRVSRLTDFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 255 NDRHRISLSIK 265



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  + +FGAFV       GLVH+S+++ + V K SDV+K G  V VK+L+ D  +
Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSK 343

Query: 681 GKIKLSMKVVD 691
            +I LS+K VD
Sbjct: 344 RRISLSIKQVD 354


>gi|325498949|gb|EGC96808.1| transcriptional accessory protein [Escherichia fergusonii ECD227]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|310826138|ref|YP_003958495.1| RNA binding S1 domain protein [Eubacterium limosum KIST612]
 gi|308737872|gb|ADO35532.1| RNA binding S1 domain protein [Eubacterium limosum KIST612]
          Length = 716

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHISQ+S   ++  +DV+  GD V VK+L  D +R +I
Sbjct: 651 GTVRNVIDFGAFVDIGVHQDGLVHISQISDRYISHPTDVLSVGDVVTVKVLSVDVERKRI 710

Query: 684 KLSMKV 689
            LSM V
Sbjct: 711 GLSMLV 716


>gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM
           43247]
 gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247]
          Length = 487

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 210 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|218691684|ref|YP_002399896.1| transcriptional accessory protein [Escherichia coli ED1a]
 gi|218429248|emb|CAR10058.1| transcriptional accessory protein [Escherichia coli ED1a]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|223043965|ref|ZP_03614006.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|222442680|gb|EEE48784.1| conserved hypothetical protein [Staphylococcus capitis SK14]
          Length = 716

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ E  K+  G V  V+DFGAF+     +DGLVH+S+LS + V    D+V  GD V 
Sbjct: 636 SIEDLNEGMKL-NGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 672 VKLLDFD-DRGKIKLSM 687
           V +LD D ++GK+ L+M
Sbjct: 695 VWILDIDENKGKVSLTM 711


>gi|324111719|gb|EGC05699.1| tex protein containing protein [Escherichia fergusonii B253]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|323966220|gb|EGB61656.1| tex protein containing protein [Escherichia coli M863]
 gi|323974789|gb|EGB69901.1| tex protein containing protein [Escherichia coli TW10509]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|331685047|ref|ZP_08385633.1| protein YhgF [Escherichia coli H299]
 gi|331077418|gb|EGI48630.1| protein YhgF [Escherichia coli H299]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|284822061|gb|ADB98031.1| conserved hypothetical protein [Escherichia coli]
          Length = 316

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 196 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 255

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 256 KRIALTMRLDEQ 267


>gi|266619787|ref|ZP_06112722.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM
           13479]
 gi|288868638|gb|EFD00937.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM
           13479]
          Length = 347

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G V  + ++GAF++      GL+HISQ+S +R+     V+KEG TV VK++  
Sbjct: 244 EVGAVMDGTVDTLKEYGAFINLENGLSGLLHISQISNQRIKHPGAVLKEGQTVKVKIISI 303

Query: 678 DDRGKIKLSMKVVD 691
            D  KI LSMK ++
Sbjct: 304 KDN-KISLSMKALE 316


>gi|303277493|ref|XP_003058040.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460697|gb|EEH57991.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 698

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PEV  IY+G+V  VMDFG FV    F    +GLVH+S +S+ +     + V +   VWVK
Sbjct: 195 PEVGAIYRGRVTNVMDFGCFVELTEFERRFEGLVHVSLMSSLKQINAREQVSKDQRVWVK 254

Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695
           +       ++ LSM+ V+Q+TG
Sbjct: 255 VTTRSS-TRMALSMRDVNQDTG 275


>gi|218550665|ref|YP_002384456.1| transcriptional accessory protein [Escherichia fergusonii ATCC
           35469]
 gi|218358206|emb|CAQ90853.1| transcriptional accessory protein [Escherichia fergusonii ATCC
           35469]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|215488688|ref|YP_002331119.1| predicted transcriptional accessory protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266760|emb|CAS11200.1| predicted transcriptional accessory protein [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|170767157|ref|ZP_02901610.1| putative transcriptional accessory protein [Escherichia albertii
           TW07627]
 gi|170124595|gb|EDS93526.1| putative transcriptional accessory protein [Escherichia albertii
           TW07627]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|15803911|ref|NP_289947.1| hypothetical protein Z4762 [Escherichia coli O157:H7 EDL933]
 gi|15833503|ref|NP_312276.1| hypothetical protein ECs4249 [Escherichia coli O157:H7 str. Sakai]
 gi|12518037|gb|AAG58508.1|AE005563_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363723|dbj|BAB37672.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209756500|gb|ACI76562.1| hypothetical protein ECs4249 [Escherichia coli]
          Length = 740

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067]
          Length = 251

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 22/205 (10%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +++R+DGR+S  +R I      L    GS L   G+T+ I   ++ T+        + G 
Sbjct: 2   RQMRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGE 57

Query: 370 QRNDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            R      Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ +
Sbjct: 58  GRGWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWL 117

Query: 426 VSEITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +A+      +DA VP +K PV    A  ++G++++G   +
Sbjct: 118 DCDVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGGTVL 177

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            L+ I   ED    +D  +  T SG
Sbjct: 178 DLNYI---EDSAAQVDMNIIMTGSG 199


>gi|300937295|ref|ZP_07152137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
 gi|300457644|gb|EFK21137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|114320628|ref|YP_742311.1| RNA-binding S1 domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227022|gb|ABI56821.1| RNA binding S1 domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 782

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + ++ D+     + +G V  V +FGAFV     +DGLVHIS L+   V    +VVK 
Sbjct: 641 REGVNTLQDL-APGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALAERFVRDPHEVVKA 699

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+++ D +R +I LSM++ D+
Sbjct: 700 GDIVKVKVMEVDLERKRIGLSMRLDDE 726


>gi|91212882|ref|YP_542868.1| hypothetical protein UTI89_C3908 [Escherichia coli UTI89]
 gi|117625674|ref|YP_858997.1| putative transcriptional accessory protein [Escherichia coli APEC
           O1]
 gi|218560465|ref|YP_002393378.1| transcriptional accessory protein [Escherichia coli S88]
 gi|237703137|ref|ZP_04533618.1| yhgF [Escherichia sp. 3_2_53FAA]
 gi|91074456|gb|ABE09337.1| hypothetical protein YhgF [Escherichia coli UTI89]
 gi|115514798|gb|ABJ02873.1| putative transcriptional accessory protein [Escherichia coli APEC
           O1]
 gi|218367234|emb|CAR05008.1| transcriptional accessory protein [Escherichia coli S88]
 gi|226902401|gb|EEH88660.1| yhgF [Escherichia sp. 3_2_53FAA]
 gi|294493847|gb|ADE92603.1| protein yhgF [Escherichia coli IHE3034]
 gi|307628468|gb|ADN72772.1| putative transcriptional accessory protein [Escherichia coli UM146]
 gi|315286094|gb|EFU45532.1| S1 RNA binding domain protein [Escherichia coli MS 110-3]
 gi|323950064|gb|EGB45947.1| tex protein containing protein [Escherichia coli H252]
 gi|323954656|gb|EGB50438.1| tex protein containing protein [Escherichia coli H263]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|109900524|ref|YP_663779.1| RNA binding S1 [Pseudoalteromonas atlantica T6c]
 gi|109702805|gb|ABG42725.1| RNA binding S1 [Pseudoalteromonas atlantica T6c]
          Length = 775

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ E   I +G V  V +FGAFV     +DGLVHIS ++ + ++   ++VK 
Sbjct: 637 KEGVSSLNDLKE-GMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKYISDPREIVKT 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V VK+++ D  R ++  +M++ D  + KP
Sbjct: 696 GDIVKVKVMEVDVARKRVSFTMRLNDDISAKP 727


>gi|331674895|ref|ZP_08375652.1| protein YhgF [Escherichia coli TA280]
 gi|331067804|gb|EGI39202.1| protein YhgF [Escherichia coli TA280]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|331649205|ref|ZP_08350291.1| protein YhgF [Escherichia coli M605]
 gi|330909440|gb|EGH37954.1| transcription accessory protein (S1 RNA-binding domain)
           [Escherichia coli AA86]
 gi|331041703|gb|EGI13847.1| protein YhgF [Escherichia coli M605]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|262281983|ref|ZP_06059752.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
 gi|262262437|gb|EEY81134.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
          Length = 75

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 11 WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
          +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY+ +    
Sbjct: 10 FAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNYEGKNVCG 68

Query: 71 GKIP 74
           +IP
Sbjct: 69 WEIP 72


>gi|218697090|ref|YP_002404757.1| transcriptional accessory protein [Escherichia coli 55989]
 gi|218353822|emb|CAV00175.1| transcriptional accessory protein [Escherichia coli 55989]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|209756502|gb|ACI76563.1| hypothetical protein ECs4249 [Escherichia coli]
 gi|209756506|gb|ACI76565.1| hypothetical protein ECs4249 [Escherichia coli]
          Length = 740

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|218706998|ref|YP_002414517.1| transcriptional accessory protein [Escherichia coli UMN026]
 gi|293406985|ref|ZP_06650909.1| yhgF [Escherichia coli FVEC1412]
 gi|298382727|ref|ZP_06992322.1| yhgF [Escherichia coli FVEC1302]
 gi|300898905|ref|ZP_07117205.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
 gi|218434095|emb|CAR15012.1| transcriptional accessory protein [Escherichia coli UMN026]
 gi|291425796|gb|EFE98830.1| yhgF [Escherichia coli FVEC1412]
 gi|298276563|gb|EFI18081.1| yhgF [Escherichia coli FVEC1302]
 gi|300357457|gb|EFJ73327.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|297582398|ref|YP_003698178.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297140855|gb|ADH97612.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 140

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    +G++  +  FGAFV   G + GLVHIS+++   V    DV+  GDTV VK+L  
Sbjct: 4   EIGSKVEGKITGITHFGAFVELPGKKTGLVHISEVADGYVENIKDVLTVGDTVTVKVLKI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  ADDGKIALSIR 74


>gi|30065310|ref|NP_839481.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T]
 gi|56480331|ref|NP_709180.2| hypothetical protein SF3426 [Shigella flexneri 2a str. 301]
 gi|30043572|gb|AAP19292.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T]
 gi|56383882|gb|AAN44887.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 740

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|110643640|ref|YP_671370.1| S1 RNA-binding domain-containing protein [Escherichia coli 536]
 gi|191171603|ref|ZP_03033151.1| putative transcriptional accessory protein [Escherichia coli F11]
 gi|300987292|ref|ZP_07178100.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
 gi|110345232|gb|ABG71469.1| protein YhgF (S1 RNA binding domain) [Escherichia coli 536]
 gi|190908230|gb|EDV67821.1| putative transcriptional accessory protein [Escherichia coli F11]
 gi|300306160|gb|EFJ60680.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
 gi|324009384|gb|EGB78603.1| S1 RNA binding domain protein [Escherichia coli MS 57-2]
 gi|324014587|gb|EGB83806.1| S1 RNA binding domain protein [Escherichia coli MS 60-1]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|172058806|ref|YP_001815266.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171991327|gb|ACB62249.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 706

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWV 672
           D+ +V   ++G V  V+DFGAFV       GLVHIS+LS +RV    DV+  GD  TVWV
Sbjct: 629 DMIQVGMEFQGTVRNVLDFGAFVDIGVKESGLVHISKLSKKRVKHPLDVIAVGDIVTVWV 688

Query: 673 KLLDFDDRGKIKLSM 687
             ++  +RG+I L+M
Sbjct: 689 TSVE-PERGRIGLTM 702


>gi|331089661|ref|ZP_08338560.1| hypothetical protein HMPREF1025_02143 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405029|gb|EGG84567.1| hypothetical protein HMPREF1025_02143 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 367

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  K++D +
Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPSDVLSVGQEITAKIVDLN 335

Query: 679 -DRGKIKLSMKVVDQN 693
            +  KI LSMK ++ +
Sbjct: 336 EEEKKISLSMKALEAD 351



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G +  V DFGAFV   G  DGL+HIS++S  R+         GDT+ V + D  D  K+ 
Sbjct: 199 GVIKNVTDFGAFVDLGGV-DGLLHISEMSWGRIDNPKKNFHVGDTLTVLVKDIHDT-KVA 256

Query: 685 LSMKVVDQN 693
           LS+K  + N
Sbjct: 257 LSLKFPETN 265


>gi|153814811|ref|ZP_01967479.1| hypothetical protein RUMTOR_01026 [Ruminococcus torques ATCC 27756]
 gi|317500330|ref|ZP_07958555.1| hypothetical protein HMPREF1026_00498 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847842|gb|EDK24760.1| hypothetical protein RUMTOR_01026 [Ruminococcus torques ATCC 27756]
 gi|316898271|gb|EFV20317.1| hypothetical protein HMPREF1026_00498 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 367

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  K++D +
Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPSDVLSVGQEITAKIVDLN 335

Query: 679 -DRGKIKLSMKVVDQN 693
            +  KI LSMK ++ +
Sbjct: 336 EEEKKISLSMKALEAD 351



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G +  V DFGAFV   G  DGL+HIS++S  R+         GDT+ V + D  D  K+ 
Sbjct: 199 GVIKNVTDFGAFVDLGGV-DGLLHISEMSWGRIDNPKKNFHVGDTLTVLVKDIHDT-KVA 256

Query: 685 LSMKVVDQN 693
           LS+K  + N
Sbjct: 257 LSLKFPETN 265


>gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis]
          Length = 489

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSVKQADED 366


>gi|320197365|gb|EFW71980.1| putative transcriptional accessory protein [Escherichia coli
           WV_060327]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|331665012|ref|ZP_08365913.1| protein YhgF [Escherichia coli TA143]
 gi|331057522|gb|EGI29508.1| protein YhgF [Escherichia coli TA143]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|291542424|emb|CBL15534.1| Transcriptional accessory protein [Ruminococcus bromii L2-63]
          Length = 715

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R  I  I D+ E  ++ KG V  V+DFGAFV     +DGLVHISQ+  + +   S+V+K 
Sbjct: 633 RSDILDIKDLKEGMEL-KGTVRNVIDFGAFVDIGVHQDGLVHISQICDKYIKHPSEVLKV 691

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V VK+L  D ++ +I L+M+
Sbjct: 692 GDVVNVKVLSVDPEKNRISLTMR 714


>gi|185535577|gb|ACC77867.1| 30S ribosomal protein S1 [Staphylococcus xylosus]
          Length = 393

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A  +L   E   E++ S+ +      + +G+V ++ +FGAFV   G  DGLVH+S+LS E
Sbjct: 174 AVEALENAEKKDELLESLNE----GDVIEGKVARLTNFGAFVDIGGV-DGLVHVSELSHE 228

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            V    DVV  GD+V VK+   D D  +I LS+K
Sbjct: 229 HVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIK 262



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 618 EVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           E+N+  + +G VV++ +FGAFV       GLVHIS++S   +    +V++ G+ V VK+L
Sbjct: 275 EINEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKIL 334

Query: 676 DFD-DRGKIKLSMKVV--DQN 693
             D +  +I LS+K    D+N
Sbjct: 335 SVDPENERISLSIKATLPDEN 355



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I ++ E +K+  G+V ++ +    VH  G + +G++ ISQLST  +   SD VK GD + 
Sbjct: 10  INEIKEGDKV-TGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIG 68

Query: 671 -WVKLLDFDDRGK 682
            +V  +++D+  +
Sbjct: 69  AYVTKVEYDEENE 81


>gi|160892953|ref|ZP_02073742.1| hypothetical protein CLOL250_00485 [Clostridium sp. L2-50]
 gi|156865512|gb|EDO58943.1| hypothetical protein CLOL250_00485 [Clostridium sp. L2-50]
          Length = 716

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHISQ+S + +    DVV  GD V VK++  D  +
Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLDVVSVGDIVTVKVMGVDLAK 704

Query: 681 GKIKLSMKVVD 691
            +I+L+MK ++
Sbjct: 705 KRIQLTMKGIE 715


>gi|26250008|ref|NP_756048.1| hypothetical protein c4184 [Escherichia coli CFT073]
 gi|227883541|ref|ZP_04001346.1| transcription accessory protein [Escherichia coli 83972]
 gi|300985365|ref|ZP_07177421.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
 gi|301050382|ref|ZP_07197270.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
 gi|26110437|gb|AAN82622.1|AE016768_40 Protein yhgF [Escherichia coli CFT073]
 gi|227839420|gb|EEJ49886.1| transcription accessory protein [Escherichia coli 83972]
 gi|300297908|gb|EFJ54293.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
 gi|300408106|gb|EFJ91644.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
 gi|307555493|gb|ADN48268.1| putative transcriptional accessory protein [Escherichia coli ABU
           83972]
 gi|315291752|gb|EFU51108.1| S1 RNA binding domain protein [Escherichia coli MS 153-1]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|327251042|gb|EGE62735.1| protein yhgF [Escherichia coli STEC_7v]
          Length = 780

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|313906129|ref|ZP_07839478.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
 gi|313469016|gb|EFR64369.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
          Length = 235

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E  ++  +  E+  +  G+V  +  +GAF+       GLVHISQ+S +RV    DV+K
Sbjct: 112 ADEEKKAKIEAIEIGSVMDGKVESIQSYGAFIDLGDGLSGLVHISQISNKRVKSVEDVLK 171

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            G  V VK++   D GK+ LSMK +++
Sbjct: 172 AGQDVKVKVIRIKD-GKLSLSMKALEE 197


>gi|300933407|ref|ZP_07148663.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
          Length = 488

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G    VK++D D
Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
 gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
          Length = 489

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSVKQADED 366


>gi|209756498|gb|ACI76561.1| hypothetical protein ECs4249 [Escherichia coli]
 gi|209756504|gb|ACI76564.1| hypothetical protein ECs4249 [Escherichia coli]
          Length = 740

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|222035109|emb|CAP77854.1| Protein yhgF [Escherichia coli LF82]
 gi|312947955|gb|ADR28782.1| transcriptional accessory protein [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|170683595|ref|YP_001745655.1| putative transcriptional accessory protein [Escherichia coli
           SMS-3-5]
 gi|170521313|gb|ACB19491.1| putative transcriptional accessory protein [Escherichia coli
           SMS-3-5]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|313647297|gb|EFS11749.1| protein yhgF [Shigella flexneri 2a str. 2457T]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|301019573|ref|ZP_07183735.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
 gi|300399198|gb|EFJ82736.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|282882561|ref|ZP_06291182.1| general stress protein 13 [Peptoniphilus lacrimalis 315-B]
 gi|300814633|ref|ZP_07094884.1| putative general stress protein 13 [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|281297703|gb|EFA90178.1| general stress protein 13 [Peptoniphilus lacrimalis 315-B]
 gi|300511252|gb|EFK38501.1| putative general stress protein 13 [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 130

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  +  FGAFV+      GLVHIS++S   V   SDV++ G  V VK+L  D
Sbjct: 5   VGDVVEGVVSNLTKFGAFVNLDSGLTGLVHISEISDTFVKDVSDVLETGQNVKVKVLSID 64

Query: 679 DRGKIKLSMK 688
           D+GKI LS+K
Sbjct: 65  DKGKIALSIK 74


>gi|262280371|ref|ZP_06058155.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258149|gb|EEY76883.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 794

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A   +DD   +      LAE+E      R  
Sbjct: 581 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPE 635

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      +  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 636 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 695

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 696 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 724


>gi|260857514|ref|YP_003231405.1| putative transcriptional accessory protein [Escherichia coli
           O26:H11 str. 11368]
 gi|260870133|ref|YP_003236535.1| putative transcriptional accessory protein [Escherichia coli
           O111:H- str. 11128]
 gi|257756163|dbj|BAI27665.1| predicted transcriptional accessory protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257766489|dbj|BAI37984.1| predicted transcriptional accessory protein [Escherichia coli
           O111:H- str. 11128]
 gi|323154240|gb|EFZ40443.1| protein yhgF [Escherichia coli EPECa14]
 gi|323179068|gb|EFZ64642.1| protein yhgF [Escherichia coli 1180]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM
           20162]
 gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM
           20162]
          Length = 499

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 215 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 273

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 274 RERVSLSLKATQED 287



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 298 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDID 357

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 358 LERRRISLSLKQANED 373


>gi|197303158|ref|ZP_03168201.1| hypothetical protein RUMLAC_01882 [Ruminococcus lactaris ATCC
           29176]
 gi|197297761|gb|EDY32318.1| hypothetical protein RUMLAC_01882 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 6/86 (6%)

Query: 606 ARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ARE +I SI    +V  + KG V  + ++GAFV       GLVH+SQ+S +RV   SDV+
Sbjct: 117 AREALIASI----QVGSVLKGTVETLQNYGAFVKLENGLSGLVHVSQISQKRVKLPSDVL 172

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + G  V VK++   D GKI LSMK +
Sbjct: 173 EVGQEVEVKVIGIKD-GKISLSMKAL 197


>gi|188589637|ref|YP_001919919.1| protein tex [Clostridium botulinum E3 str. Alaska E43]
 gi|188499918|gb|ACD53054.1| protein tex [Clostridium botulinum E3 str. Alaska E43]
          Length = 725

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D  R
Sbjct: 650 VLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVDQKR 709

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK VD+
Sbjct: 710 KRISLSMKDVDE 721


>gi|187933135|ref|YP_001884732.1| protein tex [Clostridium botulinum B str. Eklund 17B]
 gi|187721288|gb|ACD22509.1| tex domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 723

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D  R
Sbjct: 650 ILNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVDQKR 709

Query: 681 GKIKLSMKVVD 691
            +I LSMK VD
Sbjct: 710 KRISLSMKDVD 720


>gi|188495896|ref|ZP_03003166.1| putative transcriptional accessory protein [Escherichia coli 53638]
 gi|188491095|gb|EDU66198.1| putative transcriptional accessory protein [Escherichia coli 53638]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|300822796|ref|ZP_07102932.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
 gi|331670229|ref|ZP_08371068.1| protein YhgF [Escherichia coli TA271]
 gi|331679471|ref|ZP_08380141.1| protein YhgF [Escherichia coli H591]
 gi|300524562|gb|EFK45631.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
 gi|331062291|gb|EGI34211.1| protein YhgF [Escherichia coli TA271]
 gi|331072643|gb|EGI43968.1| protein YhgF [Escherichia coli H591]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079782|gb|EEI17745.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 489

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVQEGIEGLVHISELAQRHVEVPDQVVGVGEEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|168759432|ref|ZP_02784439.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168785212|ref|ZP_02810219.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC869]
 gi|217325495|ref|ZP_03441579.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|261224688|ref|ZP_05938969.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254417|ref|ZP_05946950.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189369948|gb|EDU88364.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374245|gb|EDU92661.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC869]
 gi|217321716|gb|EEC30140.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|320191582|gb|EFW66232.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|326337630|gb|EGD61465.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. 1044]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|120553401|ref|YP_957752.1| RNA-binding S1 domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120323250|gb|ABM17565.1| RNA binding S1 domain protein [Marinobacter aquaeolei VT8]
          Length = 774

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD V VK+++ D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISALSHTFVKDPREVVKAGDIVKVKVMEVDIPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ DQ
Sbjct: 713 KRIGLSMRMDDQ 724


>gi|332996405|gb|EGK16032.1| protein yhgF [Shigella flexneri VA-6]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|332750344|gb|EGJ80755.1| protein yhgF [Shigella flexneri 4343-70]
 gi|332751213|gb|EGJ81616.1| protein yhgF [Shigella flexneri 2747-71]
 gi|332996645|gb|EGK16270.1| protein yhgF [Shigella flexneri K-272]
 gi|332997185|gb|EGK16801.1| protein yhgF [Shigella flexneri K-218]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|323164969|gb|EFZ50760.1| protein yhgF [Shigella sonnei 53G]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|320175774|gb|EFW50860.1| putative transcriptional accessory protein [Shigella dysenteriae
           CDC 74-1112]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|281602757|gb|ADA75741.1| putative Transcriptional accessory protein [Shigella flexneri
           2002017]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|251779114|ref|ZP_04822034.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083429|gb|EES49319.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 725

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D  R
Sbjct: 650 VLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVDQKR 709

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK VD+
Sbjct: 710 KRISLSMKDVDE 721


>gi|168747115|ref|ZP_02772137.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753160|ref|ZP_02778167.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168765755|ref|ZP_02790762.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772701|ref|ZP_02797708.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779491|ref|ZP_02804498.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168797178|ref|ZP_02822185.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC508]
 gi|195934896|ref|ZP_03080278.1| S1 RNA-binding domain-containing protein [Escherichia coli O157:H7
           str. EC4024]
 gi|208807890|ref|ZP_03250227.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814038|ref|ZP_03255367.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820215|ref|ZP_03260535.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398543|ref|YP_002272842.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|254795322|ref|YP_003080159.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|187771459|gb|EDU35303.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188018336|gb|EDU56458.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002506|gb|EDU71492.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189359374|gb|EDU77793.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364528|gb|EDU82947.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189380095|gb|EDU98511.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208727691|gb|EDZ77292.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735315|gb|EDZ84002.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740338|gb|EDZ88020.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159943|gb|ACI37376.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|254594722|gb|ACT74083.1| predicted transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|326344619|gb|EGD68368.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. 1125]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|74313910|ref|YP_312329.1| hypothetical protein SSON_3538 [Shigella sonnei Ss046]
 gi|73857387|gb|AAZ90094.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 740

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|32472024|ref|NP_865018.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|32397396|emb|CAD72702.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
          Length = 691

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I D  +  ++ KG+V K+ +FG F+      +GL+HIS+L+  +V    +VVK GD + V
Sbjct: 567 IPDKYQPGQLVKGEVTKITNFGVFIGLEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEV 626

Query: 673 KLLDFD-DRGKIKLSMKVVD 691
           K+L  D D  KI LS+K VD
Sbjct: 627 KVLRVDTDERKIGLSLKRVD 646



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD    I  S  + IE  RE  R+ +    EV +I KG V  + DFGAFV   G  DGL+
Sbjct: 282 DDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDLGGI-DGLL 340

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           HI+ ++ ER+   ++++     + VK+L  D ++ KI L +K  D+N  + I
Sbjct: 341 HITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENI 392



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  ++ G+VV VM +GAFV      +GLVHIS++S T+RV   S++V  GD + V +L  
Sbjct: 398 VESVHPGEVVNVMSYGAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGV 457

Query: 678 DDRG-KIKLSMKVVDQN 693
           D  G ++ L MK   +N
Sbjct: 458 DPEGQQLSLGMKQTLKN 474



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K  KG+V  + ++GAF+      DGL+H+S +S T ++A  S+V+++G  +  ++L
Sbjct: 484 PE-GKDVKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRIL 542

Query: 676 DFDD-RGKIKLSMKVVDQN 693
             D+ R +I L +K +D +
Sbjct: 543 SVDEQRRRIALGLKQLDND 561


>gi|306816255|ref|ZP_07450393.1| putative transcriptional accessory protein [Escherichia coli NC101]
 gi|331659696|ref|ZP_08360634.1| protein YhgF [Escherichia coli TA206]
 gi|305850651|gb|EFM51108.1| putative transcriptional accessory protein [Escherichia coli NC101]
 gi|315295933|gb|EFU55242.1| S1 RNA binding domain protein [Escherichia coli MS 16-3]
 gi|331052911|gb|EGI24944.1| protein YhgF [Escherichia coli TA206]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|299768512|ref|YP_003730538.1| transcriptional accessory protein [Acinetobacter sp. DR1]
 gi|298698600|gb|ADI89165.1| transcriptional accessory protein [Acinetobacter sp. DR1]
          Length = 782

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A   +DD   +      LAE+E      R  
Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      +  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 624 FRTAKFREDITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPH 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712


>gi|262202743|ref|YP_003273951.1| Tex-like protein protein-like protein [Gordonia bronchialis DSM
           43247]
 gi|262086090|gb|ACY22058.1| Tex-like protein protein-like protein [Gordonia bronchialis DSM
           43247]
          Length = 815

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +GQV  V  FGAFV     +DGLVH+S ++   V+   +VVK GD V VK+++ D +R
Sbjct: 649 ILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDPREVVKSGDIVTVKVMEVDVER 708

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I LS++ +D   G P
Sbjct: 709 KRIGLSLR-LDDEPGAP 724


>gi|251793287|ref|YP_003008015.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
 gi|247534682|gb|ACS97928.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
          Length = 771

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G
Sbjct: 640 EGVEEITDL-KAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
           D V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 699 DVVKVKVLEVDVARRRIALTMRLDESAVKNDGK 731


>gi|110807239|ref|YP_690759.1| hypothetical protein SFV_3412 [Shigella flexneri 5 str. 8401]
 gi|110616787|gb|ABF05454.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|82778776|ref|YP_405125.1| hypothetical protein SDY_3669 [Shigella dysenteriae Sd197]
 gi|81242924|gb|ABB63634.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 740

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|157162884|ref|YP_001460202.1| protein yhgF [Escherichia coli HS]
 gi|187730372|ref|YP_001882084.1| putative transcriptional accessory protein [Shigella boydii CDC
           3083-94]
 gi|191167913|ref|ZP_03029717.1| putative transcriptional accessory protein [Escherichia coli B7A]
 gi|209920863|ref|YP_002294947.1| hypothetical protein ECSE_3672 [Escherichia coli SE11]
 gi|218555956|ref|YP_002388869.1| transcriptional accessory protein [Escherichia coli IAI1]
 gi|256025865|ref|ZP_05439730.1| transcriptional accessory protein [Escherichia sp. 4_1_40B]
 gi|293453713|ref|ZP_06664132.1| transcriptional accessory protein [Escherichia coli B088]
 gi|300815397|ref|ZP_07095622.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
 gi|300907450|ref|ZP_07125096.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
 gi|300919306|ref|ZP_07135820.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
 gi|300926903|ref|ZP_07142669.1| S1 RNA binding domain protein [Escherichia coli MS 182-1]
 gi|300946850|ref|ZP_07161091.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
 gi|300956736|ref|ZP_07169006.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
 gi|301023059|ref|ZP_07186867.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
 gi|301302285|ref|ZP_07208417.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
 gi|301329714|ref|ZP_07222461.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
 gi|301645847|ref|ZP_07245761.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
 gi|307140093|ref|ZP_07499449.1| putative transcriptional accessory protein [Escherichia coli H736]
 gi|307311929|ref|ZP_07591567.1| Tex-like protein [Escherichia coli W]
 gi|309794677|ref|ZP_07689099.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
 gi|312972329|ref|ZP_07786503.1| protein yhgF [Escherichia coli 1827-70]
 gi|331644107|ref|ZP_08345236.1| protein YhgF [Escherichia coli H736]
 gi|157068564|gb|ABV07819.1| protein yhgF [Escherichia coli HS]
 gi|187427364|gb|ACD06638.1| putative transcriptional accessory protein [Shigella boydii CDC
           3083-94]
 gi|190902086|gb|EDV61831.1| putative transcriptional accessory protein [Escherichia coli B7A]
 gi|209914122|dbj|BAG79196.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218362724|emb|CAR00350.1| transcriptional accessory protein [Escherichia coli IAI1]
 gi|291321839|gb|EFE61270.1| transcriptional accessory protein [Escherichia coli B088]
 gi|299880981|gb|EFI89192.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
 gi|300316467|gb|EFJ66251.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
 gi|300400812|gb|EFJ84350.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
 gi|300413621|gb|EFJ96931.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
 gi|300417107|gb|EFK00418.1| S1 RNA binding domain protein [Escherichia coli MS 182-1]
 gi|300453505|gb|EFK17125.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
 gi|300532289|gb|EFK53351.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
 gi|300842448|gb|EFK70208.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
 gi|300844199|gb|EFK71959.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
 gi|301075836|gb|EFK90642.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
 gi|306908073|gb|EFN38573.1| Tex-like protein [Escherichia coli W]
 gi|308121727|gb|EFO58989.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
 gi|310334706|gb|EFQ00911.1| protein yhgF [Escherichia coli 1827-70]
 gi|315062686|gb|ADT77013.1| predicted transcriptional accessory protein [Escherichia coli W]
 gi|315255997|gb|EFU35965.1| S1 RNA binding domain protein [Escherichia coli MS 85-1]
 gi|315614675|gb|EFU95315.1| protein yhgF [Escherichia coli 3431]
 gi|320181897|gb|EFW56803.1| putative transcriptional accessory protein [Shigella boydii ATCC
           9905]
 gi|320199577|gb|EFW74167.1| putative transcriptional accessory protein [Escherichia coli
           EC4100B]
 gi|323174040|gb|EFZ59668.1| protein yhgF [Escherichia coli LT-68]
 gi|323182867|gb|EFZ68268.1| protein yhgF [Escherichia coli 1357]
 gi|323376726|gb|ADX48994.1| Tex-like protein [Escherichia coli KO11]
 gi|323939373|gb|EGB35584.1| tex protein containing protein [Escherichia coli E482]
 gi|324018697|gb|EGB87916.1| S1 RNA binding domain protein [Escherichia coli MS 117-3]
 gi|324116398|gb|EGC10317.1| tex protein containing protein [Escherichia coli E1167]
 gi|331036401|gb|EGI08627.1| protein YhgF [Escherichia coli H736]
 gi|332085555|gb|EGI90721.1| protein yhgF [Shigella boydii 5216-82]
 gi|332345359|gb|AEE58693.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|329766865|ref|ZP_08258393.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
 gi|328837590|gb|EGF87215.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
          Length = 419

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           + E E A+++     ++ E   + +G+V ++ DFGAFV+  G  DGL+HIS++S  RV K
Sbjct: 206 ILEEEKAKKLAEVYGNINE-GDVIEGKVSRITDFGAFVN-IGEVDGLLHISEISHARVEK 263

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            SDV+  GDTV V ++  D +  KI LS K +
Sbjct: 264 VSDVISVGDTVKVAVIAVDKENEKISLSAKTL 295



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E AR  I++         + +G V     FGAFV      +GLVHISQ+S +RV    DV
Sbjct: 301 EVARATIKA-------GDVLEGVVRNTTAFGAFVEVLPEVEGLVHISQISHDRVTNVEDV 353

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +K+GD V VK+L+FD +  ++ LS+K
Sbjct: 354 LKKGDKVTVKVLEFDFESERLSLSIK 379


>gi|309785848|ref|ZP_07680479.1| protein yhgF [Shigella dysenteriae 1617]
 gi|308926968|gb|EFP72444.1| protein yhgF [Shigella dysenteriae 1617]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|294638114|ref|ZP_06716371.1| protein YhgF [Edwardsiella tarda ATCC 23685]
 gi|291088746|gb|EFE21307.1| protein YhgF [Edwardsiella tarda ATCC 23685]
          Length = 775

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + ++ D+  V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK G
Sbjct: 639 EGVETLNDL-NVGMILEGCVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVDDPHKVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D +R +I L+M++ +Q
Sbjct: 698 DIVKVKVLEVDLERKRIALTMRLDEQ 723


>gi|153941449|ref|YP_001390506.1| 30S ribosomal protein S1 [Clostridium botulinum F str. Langeland]
 gi|152937345|gb|ABS42843.1| putative 30S ribosomal protein S1 [Clostridium botulinum F str.
           Langeland]
 gi|295318588|gb|ADF98965.1| putative 30S ribosomal protein S1 [Clostridium botulinum F str.
           230613]
          Length = 387

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  T KIA   L+  +  ++   ++ D   V  + +G +VK+++FGAFV      +GLVH
Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS+K   + T KP
Sbjct: 312 ISEITDEHIAKPSEKLNMGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V 
Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LDFD D  KI LS+K V ++
Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271


>gi|82545762|ref|YP_409709.1| hypothetical protein SBO_3394 [Shigella boydii Sb227]
 gi|81247173|gb|ABB67881.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 740

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 620 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 679

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 680 KRIALTMRLDEQ 691


>gi|89110603|ref|AP_004383.1| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. W3110]
 gi|90111588|ref|NP_417866.4| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082924|ref|YP_001732244.1| transcriptional accessory protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238902498|ref|YP_002928294.1| putative transcriptional accessory protein [Escherichia coli
           BW2952]
 gi|253771764|ref|YP_003034595.1| RNA binding S1 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|6176584|sp|P46837|YHGF_ECOLI RecName: Full=Protein yhgF
 gi|85676634|dbj|BAE77884.1| predicted transcriptional accessory protein [Escherichia coli str.
           K12 substr. W3110]
 gi|87082262|gb|AAC76432.2| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890759|gb|ACB04466.1| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238863139|gb|ACR65137.1| predicted transcriptional accessory protein [Escherichia coli
           BW2952]
 gi|253322808|gb|ACT27410.1| RNA binding S1 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447574|gb|ACX37996.1| RNA binding S1 domain protein [Escherichia coli DH1]
 gi|315137983|dbj|BAJ45142.1| putative transcriptional accessory protein [Escherichia coli DH1]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|193068760|ref|ZP_03049720.1| putative transcriptional accessory protein [Escherichia coli
           E110019]
 gi|192957836|gb|EDV88279.1| putative transcriptional accessory protein [Escherichia coli
           E110019]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|320186723|gb|EFW61446.1| putative transcriptional accessory protein [Shigella flexneri CDC
           796-83]
 gi|332090502|gb|EGI95600.1| protein yhgF [Shigella boydii 3594-74]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|309703818|emb|CBJ03159.1| putative transcription accessory protein [Escherichia coli ETEC
           H10407]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|157157022|ref|YP_001464864.1| protein yhgF [Escherichia coli E24377A]
 gi|193061670|ref|ZP_03042767.1| putative transcriptional accessory protein [Escherichia coli E22]
 gi|194427009|ref|ZP_03059561.1| putative transcriptional accessory protein [Escherichia coli B171]
 gi|254038574|ref|ZP_04872630.1| yhgF [Escherichia sp. 1_1_43]
 gi|256020751|ref|ZP_05434616.1| transcriptional accessory protein [Shigella sp. D9]
 gi|260846191|ref|YP_003223969.1| putative transcriptional accessory protein [Escherichia coli
           O103:H2 str. 12009]
 gi|332281954|ref|ZP_08394367.1| predicted transcriptional accessory protein [Shigella sp. D9]
 gi|157079052|gb|ABV18760.1| protein yhgF [Escherichia coli E24377A]
 gi|192932460|gb|EDV85057.1| putative transcriptional accessory protein [Escherichia coli E22]
 gi|194414970|gb|EDX31240.1| putative transcriptional accessory protein [Escherichia coli B171]
 gi|226839080|gb|EEH71103.1| yhgF [Escherichia sp. 1_1_43]
 gi|257761338|dbj|BAI32835.1| predicted transcriptional accessory protein [Escherichia coli
           O103:H2 str. 12009]
 gi|323162792|gb|EFZ48629.1| protein yhgF [Escherichia coli E128010]
 gi|323934603|gb|EGB31003.1| tex protein containing protein [Escherichia coli E1520]
 gi|323944371|gb|EGB40446.1| tex protein containing protein [Escherichia coli H120]
 gi|332104306|gb|EGJ07652.1| predicted transcriptional accessory protein [Shigella sp. D9]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|254520264|ref|ZP_05132320.1| RNA-binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914013|gb|EEH99214.1| RNA-binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 724

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G V  V DFGAFV     +DGLVH SQ++   V    DVVK GD V VK+L+ D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDVVKVGDIVKVKILEVDSKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 NRISLSMK 717


>gi|237728726|ref|ZP_04559207.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909348|gb|EEH95266.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 777

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|148381469|ref|YP_001256010.1| putative general stress protein [Clostridium botulinum A str. ATCC
           3502]
 gi|153931561|ref|YP_001385844.1| hypothetical protein CLB_3610 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934848|ref|YP_001389251.1| hypothetical protein CLC_3507 [Clostridium botulinum A str. Hall]
 gi|153938517|ref|YP_001392883.1| hypothetical protein CLI_3749 [Clostridium botulinum F str.
           Langeland]
 gi|168180998|ref|ZP_02615662.1| putative general stress protein [Clostridium botulinum NCTC 2916]
 gi|170756411|ref|YP_001783169.1| hypothetical protein CLD_0954 [Clostridium botulinum B1 str. Okra]
 gi|170761451|ref|YP_001788869.1| hypothetical protein CLK_2998 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226950985|ref|YP_002806076.1| putative general stress protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290953|emb|CAL85089.1| putative RNA binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927605|gb|ABS33105.1| putative RNA-binding protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930762|gb|ABS36261.1| putative RNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152934413|gb|ABS39911.1| putative general stress protein [Clostridium botulinum F str.
           Langeland]
 gi|169121623|gb|ACA45459.1| putative RNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169408440|gb|ACA56851.1| putative RNA-binding protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182668179|gb|EDT80158.1| putative general stress protein [Clostridium botulinum NCTC 2916]
 gi|226843689|gb|ACO86355.1| putative general stress protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|295320860|gb|ADG01238.1| putative general stress protein [Clostridium botulinum F str.
           230613]
 gi|322807854|emb|CBZ05429.1| RNA binding protein, contains ribosomal protein S1 domain
           [Clostridium botulinum H04402 065]
          Length = 134

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV + +FGAFV   G + GLVHIS++S   V    + +KE D V VK++  DD+G
Sbjct: 8   ILEGTVVNITNFGAFVEIEG-KTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKG 66

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 67  KISLSIK 73


>gi|110632678|ref|YP_672886.1| RNA binding S1 [Mesorhizobium sp. BNC1]
 gi|110283662|gb|ABG61721.1| RNA binding S1 [Chelativorans sp. BNC1]
          Length = 772

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 19/144 (13%)

Query: 564 RNVIGMGGKVIRGIVEQTGA------KVNIDDDGTVKIASSSLAEIEAA----REMIRSI 613
           R ++   G+ +R ++  +GA      +V  D+   +      +AE+E      R   R+ 
Sbjct: 576 RRIVAACGRDVRSLMGDSGALKALDPRVFADERFGLPTVRDIIAELEKPGRDPRPAFRTA 635

Query: 614 T------DVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           T      D+ ++    + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK
Sbjct: 636 TFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVK 695

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688
            GD V V++L+ D  R +I LSM+
Sbjct: 696 AGDVVKVRVLEVDIKRNRISLSMR 719


>gi|293416809|ref|ZP_06659446.1| transcriptional accessory protein [Escherichia coli B185]
 gi|291431385|gb|EFF04370.1| transcriptional accessory protein [Escherichia coli B185]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|291284743|ref|YP_003501561.1| protein yhgF [Escherichia coli O55:H7 str. CB9615]
 gi|290764616|gb|ADD58577.1| protein yhgF [Escherichia coli O55:H7 str. CB9615]
 gi|320639689|gb|EFX09283.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. G5101]
 gi|320645187|gb|EFX14203.1| putative transcriptional accessory protein [Escherichia coli
           O157:H- str. 493-89]
 gi|320650498|gb|EFX18964.1| putative transcriptional accessory protein [Escherichia coli
           O157:H- str. H 2687]
 gi|320655690|gb|EFX23613.1| putative transcriptional accessory protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661474|gb|EFX28889.1| putative transcriptional accessory protein [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666497|gb|EFX33480.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
 gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
          Length = 486

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G  V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSVKQADED 366


>gi|170018357|ref|YP_001723311.1| RNA-binding S1 domain-containing protein [Escherichia coli ATCC
           8739]
 gi|169753285|gb|ACA75984.1| RNA binding S1 domain protein [Escherichia coli ATCC 8739]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|325831217|ref|ZP_08164509.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
 gi|325486818|gb|EGC89265.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 717

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVH+S+++   V   S+VV  GD  TVWV  +D  DRGK
Sbjct: 649 GTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID-KDRGK 707

Query: 683 IKLSM 687
           I LSM
Sbjct: 708 ISLSM 712


>gi|310821587|ref|YP_003953945.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
 gi|309394659|gb|ADO72118.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 571

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           KG+V KV DFGAFV      +GLVH+S+L  ERV    DVV+E   V VK++D +  DR 
Sbjct: 471 KGKVTKVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQDR- 529

Query: 682 KIKLSMKVV 690
           K+ LS+K +
Sbjct: 530 KVALSIKAL 538



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G+VV + D+GAF+      +GLVH+S++S T+R+   S +++ G  V   +LD D + K
Sbjct: 297 RGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAK 356

Query: 683 -IKLSMKVVDQN 693
            I L MK ++QN
Sbjct: 357 RIALGMKQIEQN 368



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  + KGQ+  V DFG FV      DGLVH+S +S T+R+    ++ K+GD V   +L+ 
Sbjct: 379 IGSVIKGQIRNVTDFGIFVGVEEGVDGLVHVSDISWTQRIKHPGELYKKGDEVEAVMLNI 438

Query: 678 D 678
           D
Sbjct: 439 D 439



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E ++++ +      + KG V  + D+GAF+   G  DGL+HI+ +S  R+   S++
Sbjct: 196 EMKKETLKNLKE----GAVLKGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRIGHPSEM 250

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
              GD V V +L FD  + ++ L +K + ++
Sbjct: 251 FNVGDEVRVVVLKFDPAQERVSLGLKQIQED 281


>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
          Length = 487

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|116333199|ref|YP_794726.1| transcriptional accessory protein [Lactobacillus brevis ATCC 367]
 gi|116098546|gb|ABJ63695.1| Transcriptional accessory protein [Lactobacillus brevis ATCC 367]
          Length = 731

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHISQL+   V+  S VV  GD  TVWV  +D ++R 
Sbjct: 661 QGTVRNVVDFGAFVDIGVKQDGLVHISQLADHYVSDPSTVVTIGDVVTVWVLSVD-ENRQ 719

Query: 682 KIKLSMK 688
           +I+L+MK
Sbjct: 720 RIQLTMK 726


>gi|194431285|ref|ZP_03063578.1| putative transcriptional accessory protein [Shigella dysenteriae
           1012]
 gi|194420740|gb|EDX36816.1| putative transcriptional accessory protein [Shigella dysenteriae
           1012]
 gi|332085781|gb|EGI90945.1| protein yhgF [Shigella dysenteriae 155-74]
          Length = 773

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|257465084|ref|ZP_05629455.1| predicted transcriptional accessory protein [Actinobacillus minor
           202]
 gi|257450744|gb|EEV24787.1| predicted transcriptional accessory protein [Actinobacillus minor
           202]
          Length = 778

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK G
Sbjct: 647 EGVEEIKDL-KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNRFVDDPHTVVKAG 705

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V VK+L+ D  R +I L+M++ D
Sbjct: 706 DVVKVKVLEVDVARKRIALTMRLDD 730


>gi|168183609|ref|ZP_02618273.1| putative general stress protein [Clostridium botulinum Bf]
 gi|187777489|ref|ZP_02993962.1| hypothetical protein CLOSPO_01057 [Clostridium sporogenes ATCC
           15579]
 gi|237796990|ref|YP_002864542.1| hypothetical protein CLJ_B3859 [Clostridium botulinum Ba4 str. 657]
 gi|182673239|gb|EDT85200.1| putative general stress protein [Clostridium botulinum Bf]
 gi|187774417|gb|EDU38219.1| hypothetical protein CLOSPO_01057 [Clostridium sporogenes ATCC
           15579]
 gi|229260921|gb|ACQ51954.1| putative RNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 134

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV + +FGAFV   G + GLVHIS++S   V    + +KE D V VK++  DD+G
Sbjct: 8   ILEGTVVNITNFGAFVEIEG-KTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKG 66

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 67  KISLSIK 73


>gi|319440326|ref|ZP_07989482.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
          Length = 486

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   +     +V  G  + VK++D D
Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHIDVPDQIVTVGQDLMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|304408482|ref|ZP_07390125.1| Tex-like protein [Paenibacillus curdlanolyticus YK9]
 gi|304342541|gb|EFM08392.1| Tex-like protein [Paenibacillus curdlanolyticus YK9]
          Length = 742

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHIS+LST+ V   +DVV  GD V V +L+ D  +G+
Sbjct: 674 QGTVRNVIDFGAFVDIGIKNDGLVHISRLSTKFVKHPTDVVSVGDAVTVWVLEADLKKGR 733

Query: 683 IKLSM 687
           + L+M
Sbjct: 734 VSLTM 738


>gi|291550880|emb|CBL27142.1| Ribosomal protein S1 [Ruminococcus torques L2-14]
          Length = 231

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG V  + ++GAFV       GLVH+SQ+S +R+   SDV+  GD V VK++  
Sbjct: 125 KVGTVLKGTVETLQNYGAFVKLENGLSGLVHVSQISQKRIKMPSDVLTVGDEVEVKVIGI 184

Query: 678 DDRGKIKLSMKVV 690
            D GKI LSMK +
Sbjct: 185 KD-GKISLSMKAL 196


>gi|269216208|ref|ZP_06160062.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122]
 gi|269130467|gb|EEZ61545.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122]
          Length = 399

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V K++ FGAFV      +GLVHIS+++  R+   + VVK G  V VK+++ +
Sbjct: 291 VGSVIDGKVTKIVPFGAFVELGSNVEGLVHISEMAPRRIETPAQVVKVGQEVKVKVMEVN 350

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LSMK   +  G
Sbjct: 351 PDRRRISLSMKAAAEELG 368



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  ++DFGAFV   G  DGLVHIS+LS   V   S+VVK G  V V++LD D  R +
Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLSRER 269

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   Q T  P +
Sbjct: 270 ISLGLK---QTTPDPWI 283


>gi|115380643|ref|ZP_01467579.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
 gi|115362348|gb|EAU61647.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 571

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           KG+V KV DFGAFV      +GLVH+S+L  ERV    DVV+E   V VK++D +  DR 
Sbjct: 471 KGKVTKVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEAQEVDVKIIDINTQDR- 529

Query: 682 KIKLSMKVV 690
           K+ LS+K +
Sbjct: 530 KVALSIKAL 538



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G+VV + D+GAF+      +GLVH+S++S T+R+   S +++ G  V   +LD D + K
Sbjct: 297 RGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAK 356

Query: 683 -IKLSMKVVDQN 693
            I L MK ++QN
Sbjct: 357 RIALGMKQIEQN 368



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  + KGQ+  V DFG FV      DGLVH+S +S T+R+    ++ K+GD V    L+ 
Sbjct: 379 IGSVIKGQIRNVTDFGIFVGVEEGVDGLVHVSDISWTQRIKHPGELYKKGDEVEAVXLNI 438

Query: 678 D 678
           D
Sbjct: 439 D 439



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E ++++ +      + KG V  + D+GAF+   G  DGL+HI+ +S  R+   S++
Sbjct: 196 EMKKETLKNLKE----GAVLKGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRIGHPSEM 250

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
              GD V V +L FD  + ++ L +K + ++
Sbjct: 251 FNVGDEVRVVVLKFDPAQERVSLGLKQIQED 281


>gi|197119399|ref|YP_002139826.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter bemidjiensis Bem]
 gi|197088759|gb|ACH40030.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter bemidjiensis Bem]
          Length = 754

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +I D+ E   I +G V  V  FGAFV     +DGLVH+SQLS       +D VK 
Sbjct: 635 REDVVTIADLKE-GMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKV 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G+ V VKLL  D +R +I LS+K
Sbjct: 694 GEIVKVKLLSADPERKRISLSIK 716


>gi|167039354|ref|YP_001662339.1| hypothetical protein Teth514_0696 [Thermoanaerobacter sp. X514]
 gi|300913994|ref|ZP_07131311.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307725323|ref|YP_003905074.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X513]
 gi|166853594|gb|ABY92003.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
 gi|300890679|gb|EFK85824.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307582384|gb|ADN55783.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X513]
          Length = 140

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V      +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIRKHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DANGRISLSIK 74


>gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 415

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G+V  + DFGAFV   GA DGLVH+S+LS  RV    +V+K GD V V +L  
Sbjct: 232 EPGAVRTGRVTSLCDFGAFVDIGGA-DGLVHLSELSWSRVKHPEEVLKVGDAVSVYILSV 290

Query: 678 D-DRGKIKLSMK 688
           D D+ +I LS+K
Sbjct: 291 DEDKKRIALSIK 302



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++TD  ++ +   G V ++  FGAFV      +GL+HIS++S ER+    DV+ EGD+V 
Sbjct: 311 TVTDRYQIGQSVSGVVTQLTAFGAFVRLEDGIEGLIHISEMSDERIQHPRDVINEGDSVS 370

Query: 672 VKLLDFD-DRGKIKLSMK 688
            +++  D  R +I LS +
Sbjct: 371 ARIIRIDPTRKRIGLSTR 388


>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
 gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
          Length = 384

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 7/90 (7%)

Query: 601 AEIE-AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AEIE   ++++ S++       + +G+V ++  FGAFV   G  DGLVHISQ++ ERV  
Sbjct: 173 AEIEEKKKQVLHSLS----TGDVVEGKVQRLTSFGAFVDVGGV-DGLVHISQIAHERVEH 227

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            SDV+ EG  V VK+L  D D  ++ LS+K
Sbjct: 228 PSDVLSEGQEVRVKVLSVDPDSERVSLSIK 257



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I  G V +++ FGAFV      +GLVHISQ+S   +    +V++EG  V  K+L+    D
Sbjct: 276 IVTGTVKRLVSFGAFVEIAPGVEGLVHISQISKRHIGTPQEVLEEGQQVQAKVLEVSEAD 335

Query: 680 RGKIKLSMK 688
           R ++ LS++
Sbjct: 336 R-RVSLSIR 343



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V KV D  AFV      DG+V IS+LS+  V K SDV+   D + +K+   +
Sbjct: 17  VGDIVTGKVTKVEDKQAFVDVGFKVDGIVPISELSSLHVEKASDVLSVDDELELKVTKVE 76

Query: 679 DRGKIKLSMKVV 690
           D  ++ LS K V
Sbjct: 77  D-DELILSKKAV 87


>gi|317488041|ref|ZP_07946622.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
 gi|316912871|gb|EFV34399.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
          Length = 717

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVH+S+++   V   S+VV  GD  TVWV  +D  DRGK
Sbjct: 649 GTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID-KDRGK 707

Query: 683 IKLSM 687
           I LSM
Sbjct: 708 ISLSM 712


>gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
 gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
          Length = 247

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +  +R +       +   GS L   G+T+ I   T+    +++    L  T + 
Sbjct: 3   RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATI----EDKVPPFLKNTGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP +T      E SR     R +EI   RL  RA+  V+   A    TL I 
Sbjct: 59  WITAEYSMLPSSTQSRKVRESSRGKVEGRTQEIQ--RLIGRALRSVVDLDALGERTLWID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ GS +AL+DA            +P+   V+ I++G++ +G+  + 
Sbjct: 117 CDVIQADGGTRTASITGSFVALVDALNKLKEEGAIESIPVRSFVSAISVGII-NGEAML- 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  +  TD G
Sbjct: 175 --DLCYEEDSTAKVDMNIVMTDRG 196


>gi|313113528|ref|ZP_07799117.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624255|gb|EFQ07621.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 189

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +++G+V  V  FGAFV     R G+VHIS++S E V   + V+ +GD V V++++ 
Sbjct: 4   EVGNVFEGRVTGVKPFGAFVALPEGRVGMVHISEVSNEFVQDIAAVLHDGDIVKVQVINI 63

Query: 678 DDRGKIKLSMK 688
              GKI LS+K
Sbjct: 64  APDGKIALSIK 74


>gi|300176908|emb|CBK25477.2| unnamed protein product [Blastocystis hominis]
          Length = 1131

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + +IY G+V  +MD+GAF+        +DGL HIS ++ ER+   SDV++    V VK+ 
Sbjct: 197 MGEIYDGEVRSIMDYGAFIELLDVSPRQDGLCHISCIAHERIRHPSDVLRVNQRVKVKVT 256

Query: 676 DFDDRGKIKLSMKVVDQNTGK 696
                 KI LSMK +DQ TG+
Sbjct: 257 QIKG-TKIGLSMKDIDQQTGE 276


>gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506]
 gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506]
          Length = 237

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+L+   GS L   G+T  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           A +P+   +A ++ G+V DG+  + L
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLSWMKTRGMLATIPLRDHIAAVSCGIV-DGEPRLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
             +   ED   H D     T +G
Sbjct: 176 DYV---EDSSAHTDVNFVMTGTG 195


>gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA-processing protein 41) (Exosome component 4) (p12A)
           [Equus caballus]
          Length = 245

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 66  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E+  G   +   +      I  ++MD +   + E+ +   L+ A R    +   + +V
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTLLDRV 231

Query: 539 LSE 541
           + +
Sbjct: 232 VRQ 234


>gi|255024450|ref|ZP_05296436.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-208]
          Length = 154

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ +
Sbjct: 45  VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 104

Query: 679 DRGK-IKLSMK 688
           +  K + LS+K
Sbjct: 105 EADKRLSLSIK 115


>gi|240950293|ref|ZP_04754568.1| transcriptional accessory protein [Actinobacillus minor NM305]
 gi|240295195|gb|EER46003.1| transcriptional accessory protein [Actinobacillus minor NM305]
          Length = 778

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  R
Sbjct: 660 ILEGTVTNVANFGAFVDIGVHQDGLVHISMLSDRFVDDPHTVVKAGDVVKVKVLEVDVAR 719

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L+M+ +D++TG+
Sbjct: 720 KRIALTMR-LDESTGE 734


>gi|160947387|ref|ZP_02094554.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270]
 gi|158446521|gb|EDP23516.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270]
          Length = 674

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 37/155 (23%)

Query: 571 GKVIRGIVEQT---GAKVNIDD-DGTVKIASSSLAEIEAAREMI---------------- 610
           G V+RG V +    GA VN+ D DG + ++  S   I+   +++                
Sbjct: 472 GDVLRGTVRKLTDFGAFVNLGDVDGLIHVSDISWNRIKKPSDILSVGDEVEVIILKLNRE 531

Query: 611 --------RSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
                   + +T  P         V  +  G V+ ++DFGAFV      +GLVHISQ+S 
Sbjct: 532 RNRISLGLKQLTKKPFELFLENNSVGDVVTGTVINLVDFGAFVKLKENVEGLVHISQISH 591

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           + + K SDV+  G+ V VK+++ D+   KI LS+K
Sbjct: 592 DHIEKASDVLNIGEEVQVKIINIDEENQKISLSIK 626



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           A +NID+     + S    E +  +E +        V  + +G V K+ DFGAFV+  G 
Sbjct: 435 AIINIDERKKKIVLSRREVEEKELQEKLDLAWSKLAVGDVLRGTVRKLTDFGAFVNL-GD 493

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            DGL+H+S +S  R+ K SD++  GD V V +L  + +R +I L +K   Q T KP
Sbjct: 494 VDGLIHVSDISWNRIKKPSDILSVGDEVEVIILKLNRERNRISLGLK---QLTKKP 546


>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
          Length = 501

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N++ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 210 LNQLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 268

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 269 VLDVDMDRERVSLSLKATQED 289



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD V
Sbjct: 292 RQFARTHAIGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDV 351

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            +K++D D +R +I LS+K  ++
Sbjct: 352 MIKVIDIDLERRRISLSLKQANE 374


>gi|327543203|gb|EGF29638.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
          Length = 598

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I D  +  ++ KG+V K+ +FG F+      +GL+HIS+L+  +V    +VVK GD + V
Sbjct: 474 IPDKYQPGQLVKGEVTKITNFGVFIGLEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEV 533

Query: 673 KLLDFD-DRGKIKLSMKVVD 691
           K+L  D D  KI LS+K VD
Sbjct: 534 KVLRVDTDERKIGLSLKRVD 553



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD    I  S  + IE  RE  R+ +    EV +I KG V  + DFGAFV   G  DGL+
Sbjct: 189 DDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDLGGI-DGLL 247

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           HI+ ++ ER+   ++++     + VK+L  D ++ KI L +K  D+N  + I
Sbjct: 248 HITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENI 299



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  ++ G+VV VM +GAFV      +GLVHIS++S T+RV   S++V  GD + V +L  
Sbjct: 305 VESVHPGEVVNVMSYGAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGV 364

Query: 678 DDRG-KIKLSMKVVDQN 693
           D  G ++ L MK   +N
Sbjct: 365 DPEGQQLSLGMKQTLKN 381



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K  KG+V  + ++GAF+      DGL+H+S +S T ++A  S+V+++G  +  ++L
Sbjct: 391 PE-GKDVKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRIL 449

Query: 676 DFDD-RGKIKLSMKVVDQN 693
             D+ R +I L +K +D +
Sbjct: 450 SVDEQRRRIALGLKQLDND 468


>gi|311895436|dbj|BAJ27844.1| putative ribosomal protein S1 [Kitasatospora setae KM-6054]
          Length = 496

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +++++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD ++VK++D 
Sbjct: 296 QISQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKVIDI 355

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 356 DLERRRISLSLKQANESLG 374



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   ++VV+ G  V V++LD D D
Sbjct: 214 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPNEVVEVGQEVTVEVLDVDMD 272

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 273 RERVSLSLKATQED 286


>gi|163748835|ref|ZP_02156087.1| hypothetical protein KT99_02837 [Shewanella benthica KT99]
 gi|161331609|gb|EDQ02414.1| hypothetical protein KT99_02837 [Shewanella benthica KT99]
          Length = 790

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V+    +VK GD V VK+++ D +R
Sbjct: 671 ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTLVKAGDVVKVKVMEIDVER 730

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ ++   KP
Sbjct: 731 KRIALTMRLDEKAADKP 747


>gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101]
 gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101]
          Length = 248

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 111/254 (43%), Gaps = 28/254 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 YN +P +T      +++++    R  EI   RL  RA+   +   A    T+ I
Sbjct: 57  GWITAEYNMIPRSTQSRKQRDINKLKIDGRTMEIQ--RLIGRALRSAVDMKALGEKTIWI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V  G++ +
Sbjct: 115 DCDVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSIGIV--GEEKV 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +EDH+  +D  V   + G    +Q   +IG  S   +   L  A++G   ++ 
Sbjct: 173 L--DLCYEEDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQ 230

Query: 534 EMSKVLSESRLQLG 547
                L    L +G
Sbjct: 231 AQKNALKTDSLWIG 244


>gi|606342|gb|AAA58205.1| ORF_o622; reading frame open far upstream of start; possible
           frameshift, linking to previous ORF [Escherichia coli
           str. K-12 substr. MG1655]
          Length = 622

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 502 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 561

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 562 KRIALTMRLDEQ 573


>gi|157148991|ref|YP_001456310.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895]
 gi|157086196|gb|ABV15874.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895]
          Length = 776

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
 gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
          Length = 486

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 266

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 267 RERVSLSLKATQEDPWR 283



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 291 VGQIVPGRVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|114566869|ref|YP_754023.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337804|gb|ABI68652.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 687

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G VV++  FGAFV      DGLVHISQL+  RV K  DVV+  + + +K+L  D + 
Sbjct: 598 IIEGTVVRIAPFGAFVEIEAGVDGLVHISQLANHRVEKPEDVVQVNEKIKIKILSIDPEE 657

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 658 KRIGLSLK 665



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG++ +++D+GAF+   G  +GL+H+S+++  R+ + SDV++EG+ + V +L  
Sbjct: 509 EEGQVRKGRIKRLVDYGAFIDL-GGYEGLLHVSEIAHTRIDQPSDVLQEGEEIDVYILAL 567

Query: 678 D-DRGKIKLSMK 688
           D ++ ++ LS K
Sbjct: 568 DREKERVSLSRK 579



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V     S A++EA  EM    T  P    + KG+V++V+D    V   G  +G++ + ++
Sbjct: 313 VSANEESFAKLEA--EMADFTT--PNKGDVIKGKVIQVLDDEVMVDVGGKSEGIIPLREM 368

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           S + +    ++V+ GD + V +L +DD G I LS K VD
Sbjct: 369 SLQDIDSAKELVEVGDEIEVMVLKWDDDGTILLSKKKVD 407


>gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18]
 gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18]
          Length = 484

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+T  V     VV  G+ V+VK++D D
Sbjct: 290 LGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDID 349

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 350 MDRRRISLSLKQANE 364



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGA 635
           I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++ +G V  +++FGA
Sbjct: 162 IGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFGA 221

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 222 FVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279


>gi|283835802|ref|ZP_06355543.1| hypothetical protein CIT292_10196 [Citrobacter youngae ATCC 29220]
 gi|291067967|gb|EFE06076.1| protein YhgF [Citrobacter youngae ATCC 29220]
          Length = 777

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|261867409|ref|YP_003255331.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412741|gb|ACX82112.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 771

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V +   VVK GD 
Sbjct: 642 VEEITDL-KAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEEPHQVVKTGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
           V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 701 VKVKVLEVDVARRRIALTMRLDESAVKNDGK 731


>gi|237807289|ref|YP_002891729.1| RNA binding S1 domain-containing protein [Tolumonas auensis DSM
           9187]
 gi|237499550|gb|ACQ92143.1| RNA binding S1 domain protein [Tolumonas auensis DSM 9187]
          Length = 767

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  + D+ + + I +G V  V +FGAFV     +DGLVHIS ++   ++   +VVK 
Sbjct: 635 REGVEELKDL-KPDMILEGVVTNVTNFGAFVDIGVHQDGLVHISAITNRYISDPREVVKA 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+L+ D  R +I L+M++ D+
Sbjct: 694 GDIVKVKVLEVDIPRKRIALTMRLDDE 720


>gi|257095432|ref|YP_003169073.1| RNA-binding S1 domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047956|gb|ACV37144.1| RNA binding S1 domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 774

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  + D+ +   I +G V  V +FGAFV     +DGLVHIS ++   V     VVK 
Sbjct: 650 REGVEQVKDL-QPGMILEGVVTNVANFGAFVDIGVHQDGLVHISAIADRFVKDPRAVVKA 708

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+L+ D  R +I LSM++ D+
Sbjct: 709 GDVVKVKVLEVDLARQRIALSMRLADE 735


>gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
 gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
          Length = 484

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+T  V     VV  G+ V+VK++D D
Sbjct: 290 LGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDID 349

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 350 MDRRRISLSLKQANE 364



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGA 635
           I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++ +G V  +++FGA
Sbjct: 162 IGQQLEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFGA 221

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 222 FVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279


>gi|73662124|ref|YP_300905.1| RNA binding protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494639|dbj|BAE17960.1| putative RNA binding protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 716

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ +  K+  G V  V+DFGAFV     +DGLVH+S+L+ + V    D+V  GD V 
Sbjct: 636 SIEDLTKNMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLAKKFVKNPMDIVSVGDIVD 694

Query: 672 VKLLDFDD-RGKIKLSM 687
           V +LD DD +GK+ L+M
Sbjct: 695 VWILDIDDKKGKVSLTM 711


>gi|289550313|ref|YP_003471217.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179845|gb|ADC87090.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus lugdunensis HKU09-01]
          Length = 716

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  GD V 
Sbjct: 636 SIADLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSNKYVKNPMDIVTVGDIVD 694

Query: 672 VKLLDFDD-RGKIKLSM 687
           V ++D D+ +GK+ L+M
Sbjct: 695 VWIIDIDEQKGKVSLTM 711


>gi|288941833|ref|YP_003444073.1| Tex-like protein-like protein [Allochromatium vinosum DSM 180]
 gi|288897205|gb|ADC63041.1| Tex-like protein protein-like protein [Allochromatium vinosum DSM
           180]
          Length = 781

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 27/150 (18%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDG---------TVKIASSSLAEIEAA------- 606
           +R +    GK +RG++  T     +D            TVK     LAE+E         
Sbjct: 573 VRRIAEFTGKDVRGLIGDTATLRRLDPAAFTDERFGLPTVK---DILAELEKPGRDPRPE 629

Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                 +E + ++ D+ E   I +G V  V +FGAFV     +DGLVHIS LS   V   
Sbjct: 630 FKTAQFKEGVETLKDL-EPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISVLSDRFVKDP 688

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            +VVK GD V VK+L+ D +R +I LS ++
Sbjct: 689 HEVVKSGDLVKVKVLEVDLERKRIALSRRL 718


>gi|153854920|ref|ZP_01996143.1| hypothetical protein DORLON_02149 [Dorea longicatena DSM 13814]
 gi|149752622|gb|EDM62553.1| hypothetical protein DORLON_02149 [Dorea longicatena DSM 13814]
          Length = 361

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D +
Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISRAHVDKPSDVLSVGQEITAKIVDLN 335

Query: 679 D-RGKIKLSMKVVDQ 692
           +   KI LSMK ++Q
Sbjct: 336 EAEKKISLSMKALEQ 350



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAF+   G  DGL+HIS++S  RV     V + GD V V + D  D  KI
Sbjct: 198 EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDKVEVMIKDIHDT-KI 255

Query: 684 KLSMKVVDQN 693
            LS+K  + N
Sbjct: 256 ALSLKFPETN 265


>gi|300725196|ref|YP_003714524.1| protein yhgF [Xenorhabdus nematophila ATCC 19061]
 gi|297631741|emb|CBJ92460.1| Protein yhgF [Xenorhabdus nematophila ATCC 19061]
          Length = 783

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK++D D +R +
Sbjct: 654 EGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKTGDIVKVKVMDVDLNRKR 713

Query: 683 IKLSMKVVDQNTGKP 697
           I L+M++ +Q    P
Sbjct: 714 IALTMRLDEQPGEAP 728


>gi|284008801|emb|CBA75552.1| transcription accessory protein [Arsenophonus nasoniae]
          Length = 774

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  V +FGAFV     +DGLVHIS LS + +     +VK GD + VK++D 
Sbjct: 649 KVGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFIKDPHSLVKAGDIITVKVIDI 708

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I L+M+ +D+ T 
Sbjct: 709 DLNRKRIALTMR-LDEKTA 726


>gi|168235097|ref|ZP_02660155.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168818684|ref|ZP_02830684.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194735081|ref|YP_002116446.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249394|ref|YP_002148427.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|204928818|ref|ZP_03220017.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|194710583|gb|ACF89804.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197213097|gb|ACH50494.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197291463|gb|EDY30815.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204322251|gb|EDZ07449.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205344464|gb|EDZ31228.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320087919|emb|CBY97681.1| Polyribonucleotide nucleotidyltransferase Polynucleotide
           phosphorylase; PNPase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322614122|gb|EFY11058.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618014|gb|EFY14907.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625372|gb|EFY22198.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629837|gb|EFY26610.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632274|gb|EFY29025.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636375|gb|EFY33082.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643231|gb|EFY39800.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644767|gb|EFY41303.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651208|gb|EFY47592.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654924|gb|EFY51239.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659181|gb|EFY55433.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663118|gb|EFY59322.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668604|gb|EFY64757.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674592|gb|EFY70685.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678202|gb|EFY74263.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682541|gb|EFY78562.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684254|gb|EFY80260.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192191|gb|EFZ77423.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196383|gb|EFZ81535.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201816|gb|EFZ86879.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206358|gb|EFZ91319.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211951|gb|EFZ96778.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216857|gb|EGA01580.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222256|gb|EGA06639.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323228199|gb|EGA12330.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233534|gb|EGA17627.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237004|gb|EGA21071.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243781|gb|EGA27797.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323245977|gb|EGA29964.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250753|gb|EGA34631.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255764|gb|EGA39514.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261378|gb|EGA44964.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267649|gb|EGA51131.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268530|gb|EGA51997.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 776

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
 gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
          Length = 488

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+LS + V     VV  GD V+VK++D D
Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDID 354

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 355 LERRRISLSLKQANE 369



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 7/92 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E  +S +    +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+
Sbjct: 194 EETQSASRTSFLNNLAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASE 252

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           VV+ G  V V++L+ D +R ++ LS+K   ++
Sbjct: 253 VVEVGQEVTVEILEVDLERERVSLSLKATQED 284


>gi|54307403|ref|YP_128423.1| hypothetical protein PBPRA0182 [Photobacterium profundum SS9]
 gi|46911823|emb|CAG18621.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 792

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G +  V +FGAFV     +DGLVHIS LS + ++   +VVK GD V VK+++ D  R
Sbjct: 661 ILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLQR 720

Query: 681 GKIKLSMKVVDQ 692
            +I +SM++ D+
Sbjct: 721 KRIAMSMRMSDE 732


>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
          Length = 245

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 62

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               S +   R      Y+    +TGE  R     R+    G   R+     +       
Sbjct: 63  ----SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509
             E+  G   +   +      I  ++MD ++
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDSRL 205


>gi|315660226|ref|ZP_07913081.1| YhgF like protein [Staphylococcus lugdunensis M23590]
 gi|315494653|gb|EFU82993.1| YhgF like protein [Staphylococcus lugdunensis M23590]
          Length = 716

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  GD V 
Sbjct: 636 SIADLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSNKYVENPMDIVTVGDIVD 694

Query: 672 VKLLDFDD-RGKIKLSM 687
           V ++D D+ +GK+ L+M
Sbjct: 695 VWIIDIDEQKGKVSLTM 711


>gi|291547610|emb|CBL20718.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5]
          Length = 300

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 9/92 (9%)

Query: 605 AAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +ARE++R   +V + NKI         +G V  +  +GAFV       GLVHISQ+  +R
Sbjct: 173 SAREILRERAEVEKRNKISNIQVGFVTEGTVESLQPYGAFVELGNGVSGLVHISQICEKR 232

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + K S+V+  GD V VK++   D GK+ LS+K
Sbjct: 233 IRKPSEVLSVGDKVKVKVIAIKD-GKLSLSIK 263


>gi|291519327|emb|CBK74548.1| Ribosomal protein S1 [Butyrivibrio fibrisolvens 16/4]
          Length = 374

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSM 687
           ++ DFGAFV      D L+H+SQ+S ER+ K SDV+  G  +  K+++F DD  KI LSM
Sbjct: 286 RMKDFGAFVELAPGIDALLHVSQISKERIEKPSDVLSIGQDIEAKVVEFNDDEKKISLSM 345

Query: 688 KVV 690
           K +
Sbjct: 346 KAL 348



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V + ++G V  V DFGAF+   GA DGL+HIS++S  RV   +  +  GDT+ V + +  
Sbjct: 193 VGQEFEGTVKNVKDFGAFIDLGGA-DGLLHISEMSWGRVENPTKTLNVGDTIKVFVKEIK 251

Query: 679 DRGKIKLSMKVVDQN 693
           D GKI LS K  ++N
Sbjct: 252 D-GKIALSCKFDNEN 265


>gi|326316623|ref|YP_004234295.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373459|gb|ADX45728.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 788

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQLS + V    ++VK GD 
Sbjct: 655 VEDIADLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDI 713

Query: 670 VWVKLLDFDD-RGKIKLSMKV 689
           V VK+L+ D  R +I L+MK+
Sbjct: 714 VKVKVLEVDPVRKRISLTMKL 734


>gi|329122057|ref|ZP_08250665.1| S1 RNA-binding domain protein [Dialister micraerophilus DSM 19965]
 gi|327466864|gb|EGF12380.1| S1 RNA-binding domain protein [Dialister micraerophilus DSM 19965]
          Length = 171

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  ++ FGAFV     + GLVHIS+++ E V   ++ +K GD V VK++  
Sbjct: 4   EVGSIVEGKVSGIVKFGAFVDLGEGKTGLVHISEIAHEYVEDVNEFLKVGDEVKVKIISI 63

Query: 678 DDRGKIKLSMKVVDQN 693
           D+  K  LS+K    N
Sbjct: 64  DNHNKFALSIKQAQSN 79


>gi|325962327|ref|YP_004240233.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468414|gb|ADX72099.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Arthrobacter phenanthrenivorans Sphe3]
          Length = 805

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +   + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK G
Sbjct: 652 EGIEKISDL-KPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSNRFVSDPREVVKSG 710

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V VK+L+ D DR +I L++++ D+ T
Sbjct: 711 QVVRVKVLEADPDRKRISLTLRLDDEPT 738


>gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
 gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
          Length = 234

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R++   +  ++   GS L   GDT+ I   ++    +E+    L GT +
Sbjct: 2   IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASV----EEKVPPFLRGTGQ 57

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G  + R     RL  R++   +  TA    T+ I 
Sbjct: 58  GWITAEYAMLPRATAQRMVREAAR-GKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKP------VAGIAMGLVKDGDDFIILSDIS 480
            ++ ++DG +  A++ G+ +AL  A   + K       +A +++G+V    D  +L D++
Sbjct: 117 CDVIQADGGTRTASITGAFVALYRALEKMEKLEAVRSFLAAVSVGIV----DGTVLLDLN 172

Query: 481 GDEDHLGHMDFKVAGTDSG 499
            +ED +  +D  V   + G
Sbjct: 173 YEEDSMAEVDMNVVMNEKG 191


>gi|295093253|emb|CBK82344.1| Transcriptional accessory protein [Coprococcus sp. ART55/1]
          Length = 714

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHIS++S + +    DVV  GD V VK++  D  +
Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSDKFIKHPLDVVSVGDIVQVKVIGIDLAK 704

Query: 681 GKIKLSMK 688
            +I+LSMK
Sbjct: 705 KRIQLSMK 712


>gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN]
 gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
 gi|13432211|sp|P46836|RS1_MYCLE RecName: Full=30S ribosomal protein S1
 gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae]
 gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
          Length = 481

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQNTGK 696
            ++ LS+K   ++  +
Sbjct: 270 ERVSLSLKATQEDPWR 285



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|73662579|ref|YP_301360.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|84029459|sp|Q49XT0|RS1_STAS1 RecName: Full=30S ribosomal protein S1
 gi|72495094|dbj|BAE18415.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 393

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A  +L   E   E++ S+ +      + +G+V ++ +FGAFV   G  DGLVH+S+LS E
Sbjct: 174 AVEALENAEKKDELLESLNE----GDVIEGKVARLTNFGAFVDIGGV-DGLVHVSELSHE 228

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            V    DVV  G+TV VK+   D D  +I LS+K
Sbjct: 229 HVKSPEDVVSIGETVNVKIKSVDKDSERISLSIK 262



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G VV++ +FGAFV       GLVHIS++S   +   S+ ++ G  V VK+L  D + 
Sbjct: 281 VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVEN 340

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 341 ERISLSIK 348


>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
          Length = 413

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ +FGAFV   G  DGLVH+S++S + V K SDV+  G  V VK+L  D DR
Sbjct: 204 VVEGKVARMTNFGAFVDLGGV-DGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDR 262

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 263 ERISLSIK 270



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G  V VK+L+ D +R ++
Sbjct: 292 GTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRL 351

Query: 684 KLSMKVVDQ 692
            LSMK +++
Sbjct: 352 GLSMKALEE 360


>gi|291614014|ref|YP_003524171.1| hypothetical protein Slit_1548 [Sideroxydans lithotrophicus ES-1]
 gi|291584126|gb|ADE11784.1| Tex-like protein protein-like protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 786

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  + D+ E   I +G V  V  FGAFV     +DGLVHIS L+ + V     VVK 
Sbjct: 652 REGVEELKDL-EPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKA 710

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697
           G  V VK+L+ D  R ++ L+M++ D   Q  GKP
Sbjct: 711 GQIVKVKVLEVDVKRKRVSLTMRLTDAAGQAGGKP 745


>gi|116629547|ref|YP_814719.1| 30S ribosomal protein S1 [Lactobacillus gasseri ATCC 33323]
 gi|238852697|ref|ZP_04643107.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282852070|ref|ZP_06261428.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311110810|ref|ZP_07712207.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|116095129|gb|ABJ60281.1| SSU ribosomal protein S1P [Lactobacillus gasseri ATCC 33323]
 gi|238834843|gb|EEQ27070.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282556830|gb|EFB62434.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311065964|gb|EFQ46304.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
          Length = 399

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I +G+V  +  FGAFV       GLVH+S+++ + V K SDV+K G TV VK+L  D  D
Sbjct: 285 IIEGEVKTLTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LS+K  D N  K
Sbjct: 345 R-RISLSIKQADPNAAK 360



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V    +G+V ++  FGAFV   G  DGLVHIS++S + V K SDV+K G  V VK++   
Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255

Query: 678 DDRGKIKLSMK 688
           DDR +I LS+K
Sbjct: 256 DDRHRISLSIK 266


>gi|313891674|ref|ZP_07825281.1| S1 RNA binding domain protein [Dialister microaerophilus UPII
           345-E]
 gi|313119952|gb|EFR43137.1| S1 RNA binding domain protein [Dialister microaerophilus UPII
           345-E]
          Length = 171

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  ++ FGAFV     + GLVHIS+++ E V   ++ +K GD V VK++  
Sbjct: 4   EVGSIVEGKVSGIVKFGAFVDLGEGKTGLVHISEIAHEYVEDVNEFLKVGDEVKVKIISI 63

Query: 678 DDRGKIKLSMKVVDQN 693
           D+  K  LS+K    N
Sbjct: 64  DNHNKFALSIKQAQSN 79


>gi|271502330|ref|YP_003335356.1| Tex-like protein [Dickeya dadantii Ech586]
 gi|270345885|gb|ACZ78650.1| Tex-like protein [Dickeya dadantii Ech586]
          Length = 779

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|226953702|ref|ZP_03824166.1| RNA binding protein [Acinetobacter sp. ATCC 27244]
 gi|226835574|gb|EEH67957.1| RNA binding protein [Acinetobacter sp. ATCC 27244]
          Length = 784

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 18/149 (12%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REM 609
           +I+A     ++++IG        I+ Q  A   +DD   +      LAE+E      R  
Sbjct: 569 KIVAAKATTVKDIIGNTE-----IIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPE 623

Query: 610 IRSIT---DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            R+     D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E V+   
Sbjct: 624 FRTAKFREDITEVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPH 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            VVK G  V V+++  D +R ++ LSM+ 
Sbjct: 684 KVVKPGQIVQVRVMQVDVERNRVNLSMRA 712


>gi|120612074|ref|YP_971752.1| RNA-binding S1 domain-containing protein [Acidovorax citrulli
           AAC00-1]
 gi|120590538|gb|ABM33978.1| RNA binding S1 domain protein [Acidovorax citrulli AAC00-1]
          Length = 788

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQLS + V    ++VK GD 
Sbjct: 655 VEDIADLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDI 713

Query: 670 VWVKLLDFDD-RGKIKLSMKV 689
           V VK+L+ D  R +I L+MK+
Sbjct: 714 VKVKVLEVDPVRKRISLTMKL 734


>gi|329726096|gb|EGG62568.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU144]
          Length = 716

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D ++GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQN 693
            L+M  VD N
Sbjct: 708 SLTM--VDPN 715


>gi|319399555|gb|EFV87810.1| S1 RNA binding domain protein [Staphylococcus epidermidis FRI909]
          Length = 716

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D ++GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQN 693
            L+M  VD N
Sbjct: 708 SLTM--VDPN 715


>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1118]
          Length = 403

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D  D
Sbjct: 285 VFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSD 344

Query: 680 RGKIKLSMK 688
           R +I LS+K
Sbjct: 345 R-RISLSIK 352



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FGAF+   G  DGLVHIS++S + V K SD +K G  V VK++  D
Sbjct: 197 VGDVIEGKVSRLTNFGAFIDVGGV-DGLVHISEISYKHVDKPSDALKAGQDVKVKVIGID 255

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 256 NDRHRISLSIK 266


>gi|304317581|ref|YP_003852726.1| Tex-like protein protein-like protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779083|gb|ADL69642.1| Tex-like protein protein-like protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 712

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFG FV      DGLVHIS++S   +    DVV  GD V V+++D D DR +I
Sbjct: 648 GTVRNVVDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVIDVDIDRNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|332995759|gb|AEF05814.1| transcriptional accessory protein [Alteromonas sp. SN2]
          Length = 790

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + +I D+     I +G V  V +FGAFV     +DGLVHIS L+ + ++   DVVK 
Sbjct: 637 KEGVETIKDLTP-GMILEGVVSNVANFGAFVDVGVHQDGLVHISALTNKFISDPRDVVKA 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD V VK+L+ D  R +I  +M++ D  T
Sbjct: 696 GDIVKVKVLEVDVPRKRISFTMRLEDTPT 724


>gi|242241476|ref|ZP_04795921.1| S1 domain RNA-binding protein [Staphylococcus epidermidis W23144]
 gi|242235019|gb|EES37330.1| S1 domain RNA-binding protein [Staphylococcus epidermidis W23144]
          Length = 716

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D ++GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQN 693
            L+M  VD N
Sbjct: 708 SLTM--VDPN 715


>gi|169831339|ref|YP_001717321.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638183|gb|ACA59689.1| hydroxymethylbutenyl pyrophosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 677

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +   +VV+++ FGAFV      +GLVHIS L+   VAK  DV+ EG  + VK+L  D
Sbjct: 578 VGSVVSARVVRLVPFGAFVELEPGVEGLVHISHLADWHVAKPEDVIAEGQQINVKVLSVD 637

Query: 679 DRGK-IKLSMKVV 690
           D  K I+LS++ V
Sbjct: 638 DENKRIRLSLREV 650



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 3/108 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++   L E E +R+   ++    E   + KG V ++  FGAFV   G  DGL+HIS++
Sbjct: 468 VILSRKVLLEEEYSRKRKETLETTQE-GDVVKGVVRRLTQFGAFVDI-GGLDGLLHISEI 525

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           S  R+   S+V+K GD + V++L  D +  K+ LS+K V  N  + +V
Sbjct: 526 SWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVV 573


>gi|139437094|ref|ZP_01771254.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC
           25986]
 gi|133776741|gb|EBA40561.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC
           25986]
          Length = 369

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V K++ FGAFV      +GLVHIS+++ + V + S V   GD V VK+++ D
Sbjct: 272 VGAIVEGTVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVTHVGDKVQVKVMEID 331

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            DR +I LSMK   +  G  I
Sbjct: 332 LDRRRISLSMKSAAETLGVEI 352



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD D +R +
Sbjct: 192 QGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRER 250

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   ++  + +V
Sbjct: 251 ISLGLKQTTEDPWRALV 267


>gi|119897950|ref|YP_933163.1| transcription accessory protein [Azoarcus sp. BH72]
 gi|119670363|emb|CAL94276.1| transcription accessory protein [Azoarcus sp. BH72]
          Length = 773

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE I ++ D+ E   + +G V  V +FGAFV     +DGLVHIS L+   V     VVK 
Sbjct: 638 REGIETLKDL-EPGMMLEGVVTNVTNFGAFVDIGVHQDGLVHISALAERFVKDPHSVVKA 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V VK+L+ D  R +I L+M++ D+   K
Sbjct: 697 GQVVKVKVLEVDIPRNRIALTMRMGDEAAPK 727


>gi|313623122|gb|EFR93389.1| 30S ribosomal protein S1 [Listeria innocua FSL J1-023]
          Length = 381

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I++   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV V
Sbjct: 266 ISEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L+ + D  ++ LS+K
Sbjct: 326 KVLEVNEDDKRLSLSIK 342



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVENEKANQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEALEEGQKVKVKVIGIDPENERISLSIK 256


>gi|271968816|ref|YP_003343012.1| RNA binding S1 domain-containing protein [Streptosporangium roseum
           DSM 43021]
 gi|270511991|gb|ACZ90269.1| RNA binding S1 domain protein [Streptosporangium roseum DSM 43021]
          Length = 797

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 18/143 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           IR VIG  G V+R +  Q      +DD   +   +  L+E+E      R   ++ T    
Sbjct: 579 IRKVIG-NGTVLRALRPQD----FVDDTFGLPTVTDILSELEKPGRDPRPAFKTATFKEG 633

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V K+         +G V  V  FGAFV     +DGLVH+S LS   V    +VVK GD V
Sbjct: 634 VEKLSDLTPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSHNFVKDPREVVKPGDIV 693

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            VK+LD D  R +I L++++ D+
Sbjct: 694 RVKVLDVDIPRKRISLTLRLEDE 716


>gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
          Length = 391

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++ +G V ++ DFGAFV   G  DGLVH+S+L+  RV   S+V+ EGD V VK+L  D +
Sbjct: 201 QVMEGTVQRLTDFGAFVDIGGV-DGLVHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQ 259

Query: 681 G-KIKLSMK 688
             +I LS+K
Sbjct: 260 NERISLSIK 268



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V +++ FGAFV      +GLVHISQ+S   +A  S+ ++EG  V VK+LD   ++
Sbjct: 287 IVTGTVKRLVSFGAFVEVYQGVEGLVHISQISRRHIATPSEELEEGQEVRVKVLDMQPEQ 346

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 347 KRISLSIK 354



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I KG+V KV D    V      DG++ IS+LS+  V K SDV+ EGD V VK++  +D  
Sbjct: 29  IVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSLHVDKASDVLSEGDEVEVKVIRINDEE 88

Query: 681 GKIKLSMKVVD 691
            K+ LS K VD
Sbjct: 89  DKLVLSKKAVD 99


>gi|323224272|gb|EGA08561.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 637

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 514 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 573

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 574 KRIALTMRLDEQ 585


>gi|270158185|ref|ZP_06186842.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289163556|ref|YP_003453694.1| transcriptional accessory protein [Legionella longbeachae NSW150]
 gi|269990210|gb|EEZ96464.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288856729|emb|CBJ10540.1| transcriptional accessory protein [Legionella longbeachae NSW150]
          Length = 781

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 30/239 (12%)

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK-IGGISENIMVMALQQAKRGRLHILN 533
           +LS ISG  + L   +  +   + G    +M++K +G + E     A QQA  G L I+N
Sbjct: 504 LLSHISGLNETLAK-NIVLYRDEHGAFKNRMELKNVGRMGEK----AFQQAA-GFLRIMN 557

Query: 534 EMSKVLSESRLQLGEFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             + +  ++     E  P VE I+A     I+N+IG   + +R +     A+  +D+   
Sbjct: 558 GDNPL--DASCVHPEAYPLVEKIIANKKVDIKNLIG-NKEQLRSV----NAEQFVDEQFG 610

Query: 593 VKIASSSLAEIEAA-------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +      L+E+E               +E I  I  + E   I +G V  V +FGAF+  
Sbjct: 611 LPTIKDVLSELEKPGRDPRPEFKTAQFKEGIEDIEHLQE-GMILEGVVSNVTNFGAFIDI 669

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              +DGLVHIS ++ + ++    VVK GD V VK+++ D +R +I LSMK+ D+    P
Sbjct: 670 GVHQDGLVHISAMTHKFISDPRTVVKAGDIVTVKVVEIDKERKRIGLSMKLEDEPLSTP 728


>gi|257884453|ref|ZP_05664106.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257820291|gb|EEV47439.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
          Length = 726

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|238921495|ref|YP_002935010.1| hypothetical protein NT01EI_3647 [Edwardsiella ictaluri 93-146]
 gi|238871064|gb|ACR70775.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 779

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + ++ D+  V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK G
Sbjct: 639 EGVETLADL-SVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVEDPHKVVKAG 697

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ +Q
Sbjct: 698 DIVKVKVLEVDQARRRIALTMRLDEQ 723


>gi|294615654|ref|ZP_06695509.1| protein tex [Enterococcus faecium E1636]
 gi|291591483|gb|EFF23137.1| protein tex [Enterococcus faecium E1636]
          Length = 726

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|259503206|ref|ZP_05746108.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
 gi|259168863|gb|EEW53358.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
          Length = 413

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ +FGAFV   G  DGLVH+S++S + V K SDV+  G  V VK+L  D DR
Sbjct: 204 VVEGKVARMTNFGAFVDLGGV-DGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDR 262

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 263 ERISLSIK 270



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G  V VK+L+ D +R ++
Sbjct: 292 GTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRL 351

Query: 684 KLSMKVVDQ 692
            LSMK +++
Sbjct: 352 GLSMKALEE 360


>gi|119509069|ref|ZP_01628220.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414]
 gi|119466235|gb|EAW47121.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414]
          Length = 719

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE I+ I+D+ EV    +G V  V +FGAFV     +DGLVHISQL+   V     +VK 
Sbjct: 634 REGIKEISDL-EVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPQKIVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  V +++L+ +++ K I LS+K V Q
Sbjct: 693 GQVVKIRVLEINEKLKRISLSIKAVKQ 719


>gi|213863357|ref|ZP_03386612.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 52

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 38/50 (76%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G
Sbjct: 1   EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 50


>gi|329735684|gb|EGG71967.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 716

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D ++GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQN 693
            L+M  VD N
Sbjct: 708 SLTM--VDPN 715


>gi|293374114|ref|ZP_06620449.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
 gi|325843793|ref|ZP_08168035.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
 gi|292647280|gb|EFF65255.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
 gi|325489289|gb|EGC91667.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
          Length = 118

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 38/64 (59%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G++  V  FGAFV     + GLVHIS+LS + V K  DVV  G  V V++ +    GKI 
Sbjct: 11  GKITSVKKFGAFVELENGKSGLVHISELSEKFVEKVEDVVSVGQEVTVRVKEVTPEGKIN 70

Query: 685 LSMK 688
           LSMK
Sbjct: 71  LSMK 74


>gi|227551626|ref|ZP_03981675.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330]
 gi|257895772|ref|ZP_05675425.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|293377613|ref|ZP_06623802.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1]
 gi|227179189|gb|EEI60161.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330]
 gi|257832337|gb|EEV58758.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|292643613|gb|EFF61734.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1]
          Length = 726

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|168178576|ref|ZP_02613240.1| ribosomal protein S1 [Clostridium botulinum NCTC 2916]
 gi|226948426|ref|YP_002803517.1| 30S ribosomal protein S1 [Clostridium botulinum A2 str. Kyoto]
 gi|182670770|gb|EDT82744.1| ribosomal protein S1 [Clostridium botulinum NCTC 2916]
 gi|226844497|gb|ACO87163.1| ribosomal protein S1 [Clostridium botulinum A2 str. Kyoto]
          Length = 387

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  T KIA   L+  +  ++   ++ D   V  + +G +VK+++FGAFV      +GLVH
Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS+K   + T KP
Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V 
Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LDFD D  KI LS+K V ++
Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271


>gi|311028994|ref|ZP_07707084.1| hypothetical protein Bm3-1_00278 [Bacillus sp. m3-13]
 gi|311032284|ref|ZP_07710374.1| hypothetical protein Bm3-1_17387 [Bacillus sp. m3-13]
          Length = 154

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGTTGLVHISEVADNYVKDINDHLKVGDEVQVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|293571809|ref|ZP_06682825.1| S1 RNA binding domain protein [Enterococcus faecium E980]
 gi|291608063|gb|EFF37369.1| S1 RNA binding domain protein [Enterococcus faecium E980]
          Length = 726

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|261367121|ref|ZP_05980004.1| RNA-binding protein [Subdoligranulum variabile DSM 15176]
 gi|282571244|gb|EFB76779.1| RNA-binding protein [Subdoligranulum variabile DSM 15176]
          Length = 154

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  +  FGAFV     + GLVHIS++S E V   S V+++G TV VK+L  
Sbjct: 4   QVGDIVEGKVTGIKPFGAFVSLPEGKTGLVHISEVSYEFVQDLSAVLEDGQTVTVKVLSI 63

Query: 678 DDRGKIKLSMK 688
              GKI LS+K
Sbjct: 64  APDGKIALSIK 74


>gi|307132915|ref|YP_003884931.1| putative transcriptional accessory protein [Dickeya dadantii 3937]
 gi|306530444|gb|ADN00375.1| predicted transcriptional accessory protein [Dickeya dadantii 3937]
          Length = 781

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
 gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
          Length = 250

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R I+ ++G      GS+L   G+T+ +   T+    ++     + G Q 
Sbjct: 2   VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATI----EDGVPAWMRGQQG 57

Query: 372 NDFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT + SR     PS R     RL  RA+   +   A    T+ I  ++
Sbjct: 58  GWVTAEYAMLPRATLQRSRRERNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDV 117

Query: 430 TESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A++ G  +AL  A             P   P+A +++G+++D     +L D
Sbjct: 118 LQADGGTRTASISGGYVALALAVDHLVRSGAVETYPTLTPLAAVSVGMIQD----TLLLD 173

Query: 479 ISGDEDHLGHMDFKV 493
           +  +ED    +D  V
Sbjct: 174 LCYEEDSQADLDCNV 188


>gi|16801118|ref|NP_471386.1| 30S ribosomal protein S1 [Listeria innocua Clip11262]
 gi|16414553|emb|CAC97282.1| lin2052 [Listeria innocua Clip11262]
 gi|313618132|gb|EFR90228.1| 30S ribosomal protein S1 [Listeria innocua FSL S4-378]
          Length = 381

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I++   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV V
Sbjct: 266 ISEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEV 325

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L+ + D  ++ LS+K
Sbjct: 326 KVLEVNEDDKRLSLSIK 342



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVENEKANQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEALEEGQKVKVKVIGIDPENERISLSIK 256


>gi|293556206|ref|ZP_06674796.1| protein Tex [Enterococcus faecium E1039]
 gi|291601625|gb|EFF31887.1| protein Tex [Enterococcus faecium E1039]
          Length = 726

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|157676010|emb|CAP07846.1| putative transcriptional accessory protein [Neisseria animalis]
          Length = 762

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +   I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK G
Sbjct: 629 EGINEIKDL-QPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDKFVQDPREVVKAG 687

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ D+
Sbjct: 688 DVVKVKVLEVDAARKRIALTMRLDDE 713


>gi|294620344|ref|ZP_06699656.1| protein tex [Enterococcus faecium E1679]
 gi|291593415|gb|EFF24977.1| protein tex [Enterococcus faecium E1679]
          Length = 726

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|229845697|ref|ZP_04465820.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
 gi|229811383|gb|EEP47089.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
          Length = 770

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
            + V     VVK G+ V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVSRKRIALTMRLDESAVKNDGK 731


>gi|69248547|ref|ZP_00604768.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257878425|ref|ZP_05658078.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257882843|ref|ZP_05662496.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257889376|ref|ZP_05669029.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257894389|ref|ZP_05674042.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260560014|ref|ZP_05832192.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|261207890|ref|ZP_05922575.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289566958|ref|ZP_06447362.1| S1 RNA binding domain-containing protein [Enterococcus faecium
           D344SRF]
 gi|293559960|ref|ZP_06676468.1| protein tex [Enterococcus faecium E1162]
 gi|293569020|ref|ZP_06680333.1| S1 RNA binding domain protein [Enterococcus faecium E1071]
 gi|294623293|ref|ZP_06702158.1| protein tex [Enterococcus faecium U0317]
 gi|314948913|ref|ZP_07852282.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
 gi|68194393|gb|EAN08900.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257812653|gb|EEV41411.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257818501|gb|EEV45829.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257825736|gb|EEV52362.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257830768|gb|EEV57375.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260073849|gb|EEW62173.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|260078273|gb|EEW65979.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289161257|gb|EFD09153.1| S1 RNA binding domain-containing protein [Enterococcus faecium
           D344SRF]
 gi|291588453|gb|EFF20288.1| S1 RNA binding domain protein [Enterococcus faecium E1071]
 gi|291597321|gb|EFF28507.1| protein tex [Enterococcus faecium U0317]
 gi|291606048|gb|EFF35474.1| protein tex [Enterococcus faecium E1162]
 gi|313644703|gb|EFS09283.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
          Length = 726

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|324997170|ref|ZP_08118282.1| 30S ribosomal protein S1 [Pseudonocardia sp. P1]
          Length = 502

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N++ +GQV K     V++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNQLQRGQVRKGVVSSVVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 265 VLDVDLDRERVSLSLKATQED 285



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD   VK++D D
Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGDDAMVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 356 LDRRRISLSLKQANE 370


>gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
 gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
          Length = 518

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D
Sbjct: 331 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 390

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LS+K  ++ +G
Sbjct: 391 LDRRRISLSLKQANEASG 408



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 248 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 306

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 307 RERVSLSLKATQEDPWR 323


>gi|111023499|ref|YP_706471.1| RNA binding protein [Rhodococcus jostii RHA1]
 gi|110823029|gb|ABG98313.1| possible RNA binding protein [Rhodococcus jostii RHA1]
          Length = 778

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 19/149 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGA--KVN----IDDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++G  G  +R I+  T A   +N    +DD   +   +  + E+E      R   ++
Sbjct: 565 VRKIVGASGTGVREIIGNTSALRSLNPADFVDDRFGLPTVTDIIGELEKPGRDPRPEFKT 624

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    + K+         +G V  V  FGAFV     +DGLVH+S +S   V    DVV
Sbjct: 625 ATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVV 684

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           K GD V VK+L+ D+ R +I L++++ D+
Sbjct: 685 KSGDVVKVKVLEVDEARQRIGLTLRLDDE 713


>gi|314937788|ref|ZP_07845105.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
 gi|314941666|ref|ZP_07848546.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|314950968|ref|ZP_07854035.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|314992970|ref|ZP_07858366.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|314996417|ref|ZP_07861460.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|313589399|gb|EFR68244.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|313592493|gb|EFR71338.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|313596823|gb|EFR75668.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|313599557|gb|EFR78400.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|313642819|gb|EFS07399.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
          Length = 726

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|170756770|ref|YP_001780782.1| 30S ribosomal protein S1 [Clostridium botulinum B1 str. Okra]
 gi|169121982|gb|ACA45818.1| ribosomal protein S1 [Clostridium botulinum B1 str. Okra]
          Length = 387

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  T KIA   L+  +  ++   ++ D   V  + +G +VK+++FGAFV      +GLVH
Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS+K   + T KP
Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V 
Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LDFD D  KI LS+K V ++
Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271


>gi|153931066|ref|YP_001383520.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397]
 gi|153935687|ref|YP_001387069.1| 30S ribosomal protein S1 [Clostridium botulinum A str. Hall]
 gi|152927110|gb|ABS32610.1| ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397]
 gi|152931601|gb|ABS37100.1| ribosomal protein S1 [Clostridium botulinum A str. Hall]
          Length = 387

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  T KIA   L+  +  ++   ++ D   V  + +G +VK+++FGAFV      +GLVH
Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS+K   + T KP
Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V 
Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LDFD D  KI LS+K V ++
Sbjct: 251 VLDFDKDTKKIALSLKDVKKD 271


>gi|153854638|ref|ZP_01995888.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814]
 gi|149752742|gb|EDM62673.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814]
          Length = 269

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E AR+   +     +V  I  G V  + ++GAFV       GLVHISQ+S +R+   +DV
Sbjct: 150 EKARKEREAKIAAVKVGSIVTGTVESLQNYGAFVDLGDGLSGLVHISQISLKRIKSPADV 209

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  GD V VK++   D GKI LSMK +
Sbjct: 210 LNVGDEVTVKIIGIKD-GKISLSMKAL 235


>gi|74317963|ref|YP_315703.1| hypothetical protein Tbd_1945 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057458|gb|AAZ97898.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 800

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 605 AAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           A R+ I ++ D+ PE+  + +G V  V  FGAFV     +DGLVHIS LS   V     V
Sbjct: 649 AFRDGIETLADLKPEM--VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNSFVKDPHTV 706

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           VK G  V VK+L+ D+ R +I L+M++ D   G
Sbjct: 707 VKAGQIVKVKVLEVDEKRKRIALTMRLGDAAAG 739


>gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
 gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
          Length = 250

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 21/201 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R IS ++G      GS+L   G T+ +   T+    ++     + G Q 
Sbjct: 2   MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATV----EDGVPAWMRGQQS 57

Query: 372 NDFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT + +R     PS R     RL  R++   +   A    T+ I  ++
Sbjct: 58  GWVTAEYAMLPRATLQRTRRERNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDV 117

Query: 430 TESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A + G  +A       L+ +GV    P   PVA +++G+++     ++L D
Sbjct: 118 LQADGGTRTAAISGGYVALALAVDYLVRSGVLETRPTLTPVAAVSVGMLQG----VLLLD 173

Query: 479 ISGDEDHLGHMDFKVAGTDSG 499
           +  +ED    +D  V    +G
Sbjct: 174 LCYEEDSQADLDCNVVMNSAG 194


>gi|328955788|ref|YP_004373121.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
 gi|328456112|gb|AEB07306.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
          Length = 422

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+V K++ FGAFV      +GLVHIS+++ + V + S V+   + V VK+++ D
Sbjct: 291 VGAIVEGRVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVIHTNEAVQVKVMEID 350

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LSMK   +  G
Sbjct: 351 LDRRRISLSMKAAAETLG 368



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD D +R +I
Sbjct: 212 GTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERI 270

Query: 684 KLSMKVVDQNTGKPIV 699
            L +K   ++  + +V
Sbjct: 271 SLGLKQTTEDPWRALV 286


>gi|304436925|ref|ZP_07396889.1| YhgF like protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370124|gb|EFM23785.1| YhgF like protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 729

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  ++D+  V  I +G V  + DFGAF+     + GL+HIS++S  RV    DV+  
Sbjct: 639 RQNIVKLSDLA-VGTIMRGTVRNITDFGAFIDIGLKQAGLLHISEMSRRRVKHPLDVLSV 697

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GDT+ V ++  D +RG+I LS+K +++
Sbjct: 698 GDTLDVMVISLDEERGRIGLSLKRMEK 724


>gi|161611290|ref|YP_139113.2| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
 gi|161936373|ref|YP_141003.2| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
 gi|312277998|gb|ADQ62655.1| Putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus thermophilus ND03]
          Length = 400

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 6/87 (6%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           IEA +E+   +    EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      
Sbjct: 181 IEARKEVFSKL----EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKS 235

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMK 688
           VV  GD + VK+L  D+  G++ LS+K
Sbjct: 236 VVSVGDEIEVKVLAIDEEAGRVSLSLK 262



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFG FV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 281 VIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|298242788|ref|ZP_06966595.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297555842|gb|EFH89706.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 507

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  + +FGAFV   GA DGLVHISQL+  RV   S+V+  G  V V++L  D +
Sbjct: 256 EVRKGVVSNLANFGAFVDLGGA-DGLVHISQLAWSRVNHPSEVLHVGQEVEVQVLSVDKE 314

Query: 680 RGKIKLSMK 688
           R KI LS+K
Sbjct: 315 RKKIALSIK 323



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V K+  FGAF       +GL+H S+L+     K+  +++EG  + +++L  D +
Sbjct: 341 QLVNGTVTKIAPFGAFARIEDGIEGLIHHSELAPGTDPKS--ILQEGAQLQLRILRIDPE 398

Query: 680 RGKIKLSMKVVDQ 692
           R ++ LS++ VD+
Sbjct: 399 RRRLGLSLRQVDE 411


>gi|288574973|ref|ZP_06393330.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570714|gb|EFC92271.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 512

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGKI 683
           +VV++ DFGAFV      +GL+HISQLST RV K  DV+ EG  V  ++++   DDR +I
Sbjct: 394 KVVRLADFGAFVELEKGVEGLIHISQLSTRRVEKPGDVLSEGQEVTARVIEVNPDDR-RI 452

Query: 684 KLSMKVVDQ 692
           +LS+  +++
Sbjct: 453 RLSISALEE 461



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 602 EIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           E++  RE   R +T+      + +G V  +  FG FV+  G  DGLVHIS+LS +R AK 
Sbjct: 203 ELKEQRENFYRDVTE----GTVLEGTVSSLTSFGVFVNL-GPIDGLVHISELSWQRNAKP 257

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            D+ K+GDTV VK++  D +  +I LS+K
Sbjct: 258 KDIAKKGDTVKVKVIGIDQEHNRISLSVK 286



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G V  V DFGAFV      +GL+HI  LS  R+    +V+K+G  V   +L+ D
Sbjct: 308 GTVTNVTDFGAFVEVEPGIEGLIHIGDLSWTRIKHPKEVIKKGQEVETVVLNVD 361


>gi|119776640|ref|YP_929380.1| hypothetical protein Sama_3508 [Shewanella amazonensis SB2B]
 gi|119769140|gb|ABM01711.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 778

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  + D+ PE+  I +G V  V +FGAFV     +DGLVHIS LS + V+    VVK
Sbjct: 641 KEGVTEVRDLKPEM--ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVK 698

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            GD V VK+++ D +R +I LSM++
Sbjct: 699 AGDVVKVKVMEVDVERKRIGLSMRL 723


>gi|268610466|ref|ZP_06144193.1| RNA binding S1 [Ruminococcus flavefaciens FD-1]
          Length = 155

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ KIY G+V  +  +GAFV   G   G+VHIS+++   V++  D + E   V VK++  
Sbjct: 5   EIGKIYNGKVKGITQYGAFVDIEGGGSGMVHISEIANTYVSEIRDHLTENQEVKVKVIGI 64

Query: 678 DDRGKIKLSMKVVDQN 693
           ++ GK+ LS+K   +N
Sbjct: 65  NEAGKVSLSIKKAAEN 80


>gi|259501961|ref|ZP_05744863.1| S1-type RNA-binding domain protein [Lactobacillus antri DSM 16041]
 gi|259170138|gb|EEW54633.1| S1-type RNA-binding domain protein [Lactobacillus antri DSM 16041]
          Length = 165

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHISQ+S + +    DV+  GDTV  K+   
Sbjct: 4   EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDTVTAKVTRI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LSMK
Sbjct: 64  GDDGKIALSMK 74


>gi|119572064|gb|EAW51679.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_d [Homo
           sapiens]
          Length = 945

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 631 MDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           M FG FV   G R   +GLVHIS+L  E RVA  +DVV +G  V VK+L F    K  LS
Sbjct: 1   MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLS 59

Query: 687 MKVVDQNTGK 696
           MK VDQ TG+
Sbjct: 60  MKDVDQETGE 69


>gi|251787890|ref|YP_003002611.1| RNA binding S1 domain-containing protein [Dickeya zeae Ech1591]
 gi|247536511|gb|ACT05132.1| RNA binding S1 domain protein [Dickeya zeae Ech1591]
          Length = 780

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|296393091|ref|YP_003657975.1| RNA binding S1 domain-containing protein [Segniliparus rotundus DSM
           44985]
 gi|296180238|gb|ADG97144.1| RNA binding S1 domain protein [Segniliparus rotundus DSM 44985]
          Length = 482

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG +  +++FGAFV   G  DGLVH+S+LS + +   S+VVK GD V V++LD D  R
Sbjct: 211 IKKGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I +G+V K++ FGAFV      +GLVHIS+LS   + +   VV   D V VK++D D
Sbjct: 293 IGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELSERHIEQPESVVAVDDAVLVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSIKQANED 368


>gi|218528803|ref|YP_002419619.1| RNA binding S1 domain protein [Methylobacterium chloromethanicum
           CM4]
 gi|218521106|gb|ACK81691.1| RNA binding S1 domain protein [Methylobacterium chloromethanicum
           CM4]
          Length = 771

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R +
Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSIDVPRKR 714

Query: 683 IKLSMKVVDQNTG 695
           I LSM++ D   G
Sbjct: 715 IALSMRLDDPLEG 727


>gi|308801060|ref|XP_003075311.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
 gi|116061865|emb|CAL52583.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
          Length = 250

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V  V  +GAFV   G + GL+HISQ+S ER+    +V+  GD + V ++  
Sbjct: 134 EVGDVVEGMVQAVKPYGAFVD-VGGQSGLLHISQISHERIVAVENVLSAGDRIKVLVMSK 192

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG++ LS K ++QN G
Sbjct: 193 DAERGRLSLSTKKLEQNHG 211


>gi|52426262|ref|YP_089399.1| hypothetical protein MS2207 [Mannheimia succiniciproducens MBEL55E]
 gi|52308314|gb|AAU38814.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 771

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ +   I +G +  V +FGAFV     +DGLVHIS LS + V     VVK G
Sbjct: 640 EGVEEITDL-KAGMILEGTITNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V VK+L+ D  R +I L+M++
Sbjct: 699 DVVKVKVLEVDVARRRIALTMRL 721


>gi|330466770|ref|YP_004404513.1| tex-like protein [Verrucosispora maris AB-18-032]
 gi|328809741|gb|AEB43913.1| tex-like protein protein-like protein [Verrucosispora maris
           AB-18-032]
          Length = 799

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 40/214 (18%)

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP---------- 559
            G++ENI+   L +   G      E+ KV   SRL    F      + IP          
Sbjct: 518 AGLAENIV---LHRDANGPFRTRAELKKV---SRLGPKAFEQCAGFLRIPGGDDPLDSSS 571

Query: 560 --PDQ---IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA-- 606
             P+    +R ++   G+ +R I+ ++       A   +DD   +   +  LAE+E    
Sbjct: 572 VHPEAYPVVRRILSSTGQDLRSIIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGR 631

Query: 607 --REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             R   ++ T    V KI         +G V  V  FGAFV     +DGLVH+S +S   
Sbjct: 632 DPRPEFKTATFAEGVEKISDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTF 691

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           V    +VVK GD V VK+LD D  R +I L++++
Sbjct: 692 VKDPHEVVKSGDVVRVKVLDVDVPRKRISLTLRL 725


>gi|148379145|ref|YP_001253686.1| ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502]
 gi|148288629|emb|CAL82710.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502]
          Length = 381

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  T KIA   L+  +  ++   ++ D   V  + +G +VK+++FGAFV      +GLVH
Sbjct: 249 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 305

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS+K   + T KP
Sbjct: 306 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 352



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V 
Sbjct: 186 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 244

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LDFD D  KI LS+K V ++
Sbjct: 245 VLDFDKDTKKIALSLKDVKKD 265


>gi|317506138|ref|ZP_07963961.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255560|gb|EFV14807.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 482

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG +  +++FGAFV   G  DGLVH+S+LS + +   S+VVK GD V V++LD D  R
Sbjct: 211 IKKGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I +G+V K++ FGAFV      +GLVHIS+LS   + +   VV   D V VK++D D
Sbjct: 293 IGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELSERHIEQPESVVAVDDAVLVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSIKQANED 368


>gi|293390844|ref|ZP_06635178.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951378|gb|EFE01497.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 771

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD 
Sbjct: 642 VEEITDL-KAGMILEGMVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDV 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
           V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 701 VKVKVLEVDVARRRIALTMRLDESAVKNDGK 731


>gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
 gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
          Length = 489

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG +  +++FGAFV   G  DGLVH+S+LS + +   ++VV+ GD V V++LD D D
Sbjct: 213 QVRKGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPNEVVQVGDEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD+V VK++D 
Sbjct: 295 QIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIIDI 354

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I LS+K  ++ 
Sbjct: 355 DLERRRISLSLKQANET 371


>gi|62182006|ref|YP_218423.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129639|gb|AAX67342.1| paral putative RNase R [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322716494|gb|EFZ08065.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 776

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|326203351|ref|ZP_08193216.1| Tex-like protein [Clostridium papyrosolvens DSM 2782]
 gi|325986609|gb|EGD47440.1| Tex-like protein [Clostridium papyrosolvens DSM 2782]
          Length = 718

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVHISQL+ + V    DVV  GD V VK+++ D +R
Sbjct: 648 ILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNPMDVVAVGDIVKVKVIEVDVER 707

Query: 681 GKIKLSMKVVD 691
            +I L+M+ ++
Sbjct: 708 KRISLTMREIN 718


>gi|224585298|ref|YP_002639097.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469826|gb|ACN47656.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 776

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|167549292|ref|ZP_02343051.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442760|ref|YP_002042755.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194401423|gb|ACF61645.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|205325750|gb|EDZ13589.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 776

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|295835561|ref|ZP_06822494.1| transcriptional accessory protein [Streptomyces sp. SPB74]
 gi|295825552|gb|EFG64308.1| transcriptional accessory protein [Streptomyces sp. SPB74]
          Length = 866

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK 
Sbjct: 785 KEGVEKLSDL-EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKP 843

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V VK+LD D  R +I L+++
Sbjct: 844 GDIVKVKVLDVDLPRKRISLTLR 866


>gi|299538307|ref|ZP_07051592.1| hypothetical protein BFZC1_19910 [Lysinibacillus fusiformis ZC1]
 gi|298726509|gb|EFI67099.1| hypothetical protein BFZC1_19910 [Lysinibacillus fusiformis ZC1]
          Length = 723

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L  +R+    +VV  GD  TVWV+ +D   +G
Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQIDI-TKG 708

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 709 RISLTM 714


>gi|297620416|ref|YP_003708553.1| hypothetical protein wcw_0172 [Waddlia chondrophila WSU 86-1044]
 gi|297375717|gb|ADI37547.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 746

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           +G V  V  FGAFV     +DGLVHIS+LS + + + SDVVK GD + V++LD D + K 
Sbjct: 648 EGVVTNVTAFGAFVDIGVHQDGLVHISELSDQFIKEPSDVVKAGDRLKVRVLDVDQKLKR 707

Query: 683 IKLSMKVVDQNTGKPIV 699
           I LS K   + T  PI 
Sbjct: 708 ISLSAKSKSKGTA-PIA 723


>gi|320530146|ref|ZP_08031216.1| general stress protein 13 family protein [Selenomonas artemidis
           F0399]
 gi|320137579|gb|EFW29491.1| general stress protein 13 family protein [Selenomonas artemidis
           F0399]
          Length = 173

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + +FGAFV     + GL+HIS+++   V    D +KE DTV VK+L  DDRGKI LS+K 
Sbjct: 41  ITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLKERDTVRVKVLTVDDRGKIGLSIKA 100

Query: 690 V 690
           +
Sbjct: 101 L 101


>gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
 gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
          Length = 492

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 282 RERVSLSLKATQEDPWR 298



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D
Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LS+K  ++ + 
Sbjct: 366 LDRRRISLSLKQANEASA 383


>gi|188588993|ref|YP_001921151.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499274|gb|ACD52410.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 635

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G+VV++ DFGAF+      DGLVHIS++S  R+A  S+V+  G+ V  K+L+ D+  K +
Sbjct: 569 GKVVRINDFGAFIELEPGVDGLVHISKISFNRIAHPSEVLSVGEEVKAKILEVDEENKRV 628

Query: 684 KLSMK 688
            LS+K
Sbjct: 629 SLSIK 633



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + K +V +   FGAF+   G  DGL+H+SQ+S   V    D++K+ + + VK++  D
Sbjct: 478 VGDVIKAEVKRFTKFGAFLDVNGI-DGLLHLSQISWNHVKNIEDILKKDEMIEVKIIALD 536

Query: 679 DRGKIKLSM 687
              K KLS+
Sbjct: 537 KENK-KLSL 544


>gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
 gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
          Length = 502

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S  A +E  +  +R+ T + E+ K  +  G V  +++FGAFV   G  DGLVH+S+LS +
Sbjct: 188 SRRAWLEQTQSEVRT-TFLKELQKGQVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWK 245

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 246 HIDHPSEVVEVGDEVTVEVLDVDMDRERVSLSLKATQED 284



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FG+FV      +GLVHIS+L+   V     VV  G  ++VK++D D
Sbjct: 295 IGQVVPGKVTKLVPFGSFVRVEDGIEGLVHISELAERHVELPEQVVTVGADIFVKVIDID 354

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 355 LERRRISLSLKQANED 370


>gi|332686755|ref|YP_004456529.1| transcription accessory protein, S1 RNA-binding domain
           [Melissococcus plutonius ATCC 35311]
 gi|332370764|dbj|BAK21720.1| transcription accessory protein, S1 RNA-binding domain
           [Melissococcus plutonius ATCC 35311]
          Length = 732

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS++ST+ V   +D+V  GD  TVWV+ +D   + 
Sbjct: 658 EGTVRNVIDFGAFVDIGVKQDGLVHISKMSTKFVKHPTDIVSVGDIVTVWVEEVDL-KKA 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|251812215|ref|ZP_04826688.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251804312|gb|EES56969.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 232

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + SI D+ +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD 
Sbjct: 150 VLSIEDLSKGMKL-NGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDI 208

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V V +LD D ++GK+ L+M
Sbjct: 209 VEVWILDIDENKGKVSLTM 227


>gi|27468585|ref|NP_765222.1| hypothetical protein SE1667 [Staphylococcus epidermidis ATCC 12228]
 gi|57867586|ref|YP_189241.1| S1 RNA-binding domain-containing protein [Staphylococcus
           epidermidis RP62A]
 gi|282876524|ref|ZP_06285390.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|293366034|ref|ZP_06612722.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316132|gb|AAO05266.1|AE016749_212 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57638244|gb|AAW55032.1| S1 RNA binding domain protein [Staphylococcus epidermidis RP62A]
 gi|281294776|gb|EFA87304.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|291319757|gb|EFE60115.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329734126|gb|EGG70444.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 716

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D ++GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|326630018|gb|EGE36361.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 776

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|205354872|ref|YP_002228673.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274653|emb|CAR39707.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 775

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209]
 gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209]
          Length = 504

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631
           I +Q  AK+   D     +  S  A +E  +  +RS      +NK+ KGQV       ++
Sbjct: 183 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 238

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K  
Sbjct: 239 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDLDRERVSLSLKAT 297

Query: 691 DQN 693
            ++
Sbjct: 298 QED 300



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D
Sbjct: 311 LGQVVPGRVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 370

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 371 LERRRISLSLKQANE 385


>gi|303239809|ref|ZP_07326333.1| RNA binding S1 domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592746|gb|EFL62470.1| RNA binding S1 domain protein [Acetivibrio cellulolyticus CD2]
          Length = 143

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KI +G+V  + +FGAFV     + GLVHIS+++ E V      + E   V VK++  
Sbjct: 4   EVGKIVEGKVSGITNFGAFVQLSNGQTGLVHISEVAEEYVKDIKAHLNENQVVKVKIISV 63

Query: 678 DDRGKIKLSMK 688
           D  GKI LS+K
Sbjct: 64  DKNGKISLSIK 74


>gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 110/245 (44%), Gaps = 28/245 (11%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQRND 373
           + R  + +R +  +   ++   GS L   GDT+ I   T+     E  V S L G  +  
Sbjct: 3   ENRKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATI-----ESKVPSFLKGEGKGW 57

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
               Y+ LP AT E   +   ++ ++G       RL  R++  ++        T+ +  +
Sbjct: 58  VTAEYSMLPRAT-ESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCD 116

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ ++++ A            +P+   +A I++G+V D     I+ 
Sbjct: 117 VIQADGGTRTASITGAFVSMVLALNKLVEEKELSELPVEGYLAAISVGIVNDE----IML 172

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+ G ED     D  VAGTD G    +Q   +    S+N M   L  A++G   ++   S
Sbjct: 173 DLDGKEDFQADTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQS 232

Query: 537 KVLSE 541
           + LSE
Sbjct: 233 QALSE 237


>gi|161616544|ref|YP_001590509.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168232641|ref|ZP_02657699.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470413|ref|ZP_03076397.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|198242502|ref|YP_002217463.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|161365908|gb|ABX69676.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456777|gb|EDX45616.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197937018|gb|ACH74351.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205333149|gb|EDZ19913.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|326625244|gb|EGE31589.1| Protein yhgF [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 776

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|319793772|ref|YP_004155412.1| RNAase H [Variovorax paradoxus EPS]
 gi|315596235|gb|ADU37301.1| Tex-like protein protein-like protein [Variovorax paradoxus EPS]
          Length = 791

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK GD V VK+++ D  R
Sbjct: 673 ILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDVAR 732

Query: 681 GKIKLSMKV 689
            +I LSMK+
Sbjct: 733 KRIGLSMKL 741


>gi|255320246|ref|ZP_05361431.1| transcriptional accessory protein [Acinetobacter radioresistens
           SK82]
 gi|255302685|gb|EET81917.1| transcriptional accessory protein [Acinetobacter radioresistens
           SK82]
          Length = 785

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 13/125 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRS------ITDVPEVNK--IYK 624
           I+ Q      IDD   +      LAE+E      R   R+      ITDV ++ +    +
Sbjct: 587 IIRQVDPNQFIDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDDITDVKQLTEGMQLE 646

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V +FGAFV     +DGLVHIS+L+ E V+    +VK G  V V+++  D +R ++
Sbjct: 647 GVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIVQVRVIQVDAERNRV 706

Query: 684 KLSMK 688
            LSM+
Sbjct: 707 NLSMR 711


>gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
 gi|222120499|dbj|BAH17834.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
          Length = 387

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D  EV  + +G+V+++ +FGAFV   G  DGLVHISQ++ + + K  D +  GD V VK+
Sbjct: 187 DEIEVGSVIEGEVLRITNFGAFVD-IGEVDGLVHISQITHDHIDKVEDALSIGDKVKVKV 245

Query: 675 LDFDDRG-KIKLSMK 688
           L  D    ++ LSMK
Sbjct: 246 LSVDKEAERVSLSMK 260



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G+VV++ +FGAFV       GLVHISQ+S + +   S+V++ G  V VK+LD +
Sbjct: 276 IGDIVDGEVVRLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDIN 335

Query: 679 -DRGKIKLSMK 688
            +  +I LS+K
Sbjct: 336 KEEKRIGLSIK 346


>gi|207858744|ref|YP_002245395.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710547|emb|CAR34905.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 775

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec]
 gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
          Length = 493

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 282 RERVSLSLKATQEDPWR 298



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D
Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365

Query: 679 -DRGKIKLSMKVVDQNT 694
            DR +I LS+K  ++ +
Sbjct: 366 LDRRRISLSLKQANEAS 382


>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 487

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N++ +GQV K     V++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNQLARGQVRKGVVSSVVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 265 VLDVDLDRERVSLSLKATQED 285



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD   VK++D D
Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDDAMVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 356 LDRRRISLSLKQANE 370


>gi|322805479|emb|CBZ03043.1| SSU ribosomal protein S1p [Clostridium botulinum H04402 065]
          Length = 387

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 7/110 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  T KIA   L+  +  ++   ++ D   V  + +G +VK+++FGAFV      +GLVH
Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVH 311

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS+K   + T KP
Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V +
Sbjct: 193 NSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           LDFD D  KI LS+K V ++
Sbjct: 252 LDFDKDTKKIALSLKDVKKD 271


>gi|322514508|ref|ZP_08067545.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976]
 gi|322119578|gb|EFX91656.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976]
          Length = 568

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD V VK+L FD DR
Sbjct: 206 VVKGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDR 264

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 265 TRVSLGLKQLGQD 277


>gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
          Length = 480

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD ++VK++D 
Sbjct: 295 QIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKIIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +R +I LS+K  ++  G  +
Sbjct: 355 DLERRRISLSLKQANEGVGADV 376



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNTLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D +R ++ LS+K   ++
Sbjct: 265 VLDVDMERERVSLSLKATQED 285


>gi|240137316|ref|YP_002961785.1| transcriptional accessory protein [Methylobacterium extorquens AM1]
 gi|240007282|gb|ACS38508.1| transcriptional accessory protein [Methylobacterium extorquens AM1]
          Length = 771

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R +
Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSVDVPRKR 714

Query: 683 IKLSMKVVDQNTG 695
           I LSM++ D   G
Sbjct: 715 IALSMRLDDPLEG 727


>gi|42519016|ref|NP_964946.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|41583303|gb|AAS08912.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|329667449|gb|AEB93397.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
          Length = 400

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I +G+V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D  D
Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LS+K  D N  K
Sbjct: 345 R-RISLSIKQADPNAAK 360



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V    +G+V ++  FGAFV   G  DGLVHIS++S + V K SDV+K G  V VK++   
Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255

Query: 678 DDRGKIKLSMK 688
           DDR +I LS+K
Sbjct: 256 DDRHRISLSIK 266


>gi|299472226|emb|CBN77196.1| 30S ribosomal protein S1 [Ectocarpus siliculosus]
          Length = 749

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V + Y+G +  V+ +GAFV      +GLVHISQL+ E VA   D VKEGD V V++L+ D
Sbjct: 120 VGEEYEGVINNVVTYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLNVD 179

Query: 679 DRG-KIKLSMK 688
               K+ LSM+
Sbjct: 180 GEARKLVLSMR 190



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           ++   G+VV ++ +GAFV+  G  DGLVHIS+++  RV    DV + G  V V++ D + 
Sbjct: 607 DEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAIGRVDSVEDVCEMGQEVQVRISDINT 666

Query: 679 DRGKIKLSM 687
           D   + LSM
Sbjct: 667 DNNTVNLSM 675



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 4/78 (5%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVW 671
           T+VP   +  +G VV +M++GAFV   G  DG+VHISQL    ERV    + V+ G  V 
Sbjct: 397 TNVPS-EEWLEGTVVSIMNYGAFVRLDGDVDGMVHISQLDPHGERVDSVYNSVEIGQDVR 455

Query: 672 VKLLDFDDRG-KIKLSMK 688
           V++L+ D    K++L+M+
Sbjct: 456 VRILEADPSSRKLRLTMR 473



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  +  FGAFV      DGL+HISQ++ + V+   D ++ G  V V++++ D D  ++
Sbjct: 518 GRVASITHFGAFVAVDDDTDGLLHISQIAEDHVSNVEDHLQIGQEVQVRVIEVDVDNCRL 577

Query: 684 KLSMKVVDQNTGK 696
            LSM+   QN+ +
Sbjct: 578 GLSMREPRQNSPR 590



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV---VKEGDTVWVKLLDFDD- 679
           KG V  V D+G FV+  G  DGL+H+S++ST+R   + ++    +EG  V +++++ +  
Sbjct: 318 KGTVSAVADYGLFVNIEGV-DGLLHVSKMSTDRSITSENIHSHYEEGQEVEIRIMEVNTA 376

Query: 680 RGKIKLSM 687
             K+ LSM
Sbjct: 377 NNKMSLSM 384



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDF 677
           ++    +V  ++ +GAF        G VHISQ+S   E VA  SDV+  G  V V++ + 
Sbjct: 215 SQFVSAKVENIVSYGAFFGLEDGCSGFVHISQMSPTGEHVADVSDVLTVGQVVDVRIREV 274

Query: 678 DDR-GKIKLSM 687
           D++ G+I +S+
Sbjct: 275 DEKLGRINMSL 285


>gi|312198706|ref|YP_004018767.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
 gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
          Length = 493

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 223 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 282 RERVSLSLKATQEDPWR 298



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D
Sbjct: 306 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 365

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 366 LDRRRISLSLKQANE 380


>gi|269140622|ref|YP_003297323.1| RNA binding S1 domain protein [Edwardsiella tarda EIB202]
 gi|267986283|gb|ACY86112.1| RNA binding S1 domain protein [Edwardsiella tarda EIB202]
 gi|304560409|gb|ADM43073.1| YhgF [Edwardsiella tarda FL6-60]
          Length = 780

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + ++ D+  V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK G
Sbjct: 639 EGVETLADL-SVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVDDPHKVVKAG 697

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           D V VK+L+ D  R +I L+M++ +Q
Sbjct: 698 DIVKVKVLEVDQARRRIALTMRLDEQ 723


>gi|163850246|ref|YP_001638289.1| RNA-binding S1 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163661851|gb|ABY29218.1| RNA binding S1 domain protein [Methylobacterium extorquens PA1]
          Length = 771

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R +
Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSVDVPRKR 714

Query: 683 IKLSMKVVDQNTG 695
           I LSM++ D   G
Sbjct: 715 IALSMRLDDPLEG 727


>gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
 gi|156865623|gb|EDO59054.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
          Length = 650

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G++ ++ DFGAFV      D L+H+SQ+S + VAK  DV K GD +  K++DF 
Sbjct: 561 VGTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFK 620

Query: 679 -DRGKIKLSMKVV 690
            +  KI LS+K +
Sbjct: 621 PEEKKISLSVKAL 633



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA+E+   I    EV    +G V  V DFGAF+   GA DGL+HIS++S  RV     + 
Sbjct: 468 AAKELFEKI----EVGMTVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPKKMF 522

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K GDTV   + D +   KI LS+K  + N
Sbjct: 523 KVGDTVKAFIKDING-DKIALSLKFDETN 550


>gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
 gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
          Length = 246

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R IS     L+   GS     GDT+ I   TL    +++    L GT  
Sbjct: 1   MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATL----EDKVPPFLKGTGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   +   A   R  G      RL  RA+  V+   A    T+ I  
Sbjct: 57  GWITAEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           ++ ++DG +  A++ G+ +AL+DA            P+   +A +++G+V    D   + 
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVNTIYTDPEKPFPVKDFLAAVSVGVV----DGAAVL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  +  T +G +  +Q   +    ++  +   L   +RG   +++   
Sbjct: 173 DLCYAEDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQK 232

Query: 537 KVLSESRLQLG 547
           +VL E   ++G
Sbjct: 233 EVLGELSWKVG 243


>gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
 gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
          Length = 528

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D D
Sbjct: 248 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 306

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 307 RERVSLSLKATQED 320



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 331 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDID 390

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 391 LERRRISLSLKQANED 406


>gi|319897916|ref|YP_004136113.1| transcriptional accessory protein [Haemophilus influenzae F3031]
 gi|317433422|emb|CBY81803.1| predicted transcriptional accessory protein [Haemophilus influenzae
           F3031]
          Length = 770

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
            + V     VVK G+ V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDESAVKNDGK 731


>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 407

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G V +++DFGAF+      +GLVHISQ++   VA   +V+KEG  V  K+LDF+  +
Sbjct: 290 IVTGTVRRIVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQ 349

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K  ++
Sbjct: 350 KRVSLSIKETEE 361



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V ++  FGAF+   G  DGLVH+S++S + VA   D V EG +V VK+L  D   GK
Sbjct: 207 EGTVQRLTPFGAFIDIGGI-DGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAGK 265

Query: 683 IKLSMK 688
           I LSMK
Sbjct: 266 ISLSMK 271


>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
 gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
          Length = 495

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 209 LNALAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 267

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 268 VLDVDMDRERVSLSLKATQED 288



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V VK++D D
Sbjct: 299 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDID 358

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 359 LERRRISLSLKQANE 373


>gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152]
 gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152]
          Length = 487

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D D
Sbjct: 209 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 267

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 268 RERVSLSLKATQED 281



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 292 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 351

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 352 LERRRISLSLKQANED 367


>gi|295398579|ref|ZP_06808611.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563]
 gi|294973180|gb|EFG48975.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563]
          Length = 428

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 46/202 (22%)

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           KV GT + +      + +GGI   + +  + QA     H+ N  S VLSE +        
Sbjct: 208 KVTGTVARLANFGAFIDLGGIDGLVHISQIAQA-----HV-NHPSDVLSEGQ-------- 253

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
            VE++ +  D+ R  I +  K +     Q G   NI++       +   AE+E       
Sbjct: 254 EVEVLVLSVDEERGRISLSIKAL-----QPGPWENIEE------KAPKGAELE------- 295

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                        G V +++DFGAFV      +GLVHISQ+S + VA   + + EG  + 
Sbjct: 296 -------------GTVRRLVDFGAFVEVFPGVEGLVHISQISHDHVATPGEKLTEGQAIQ 342

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+LD D +  ++ LS+K +++
Sbjct: 343 VKVLDVDAENERLSLSIKALEE 364


>gi|317126803|ref|YP_004093085.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315471751|gb|ADU28354.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 141

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K GD V VK+L+ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEFLKVGDEVQVKVLNV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           +  GKI LS++   +    P
Sbjct: 64  ESDGKIGLSIRKAKEAPPSP 83


>gi|227872165|ref|ZP_03990534.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
 gi|227841994|gb|EEJ52255.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
          Length = 367

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V ++ DFGAF+      D L+H+SQ+S + V K SDV++ G  +  +++D D
Sbjct: 276 VGEIVTGRVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLD 335

Query: 679 -DRGKIKLSMKVV 690
            D  KI LS+K +
Sbjct: 336 VDNHKISLSIKAL 348



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  + DFGAF+   GA DGL+HIS++S  R+     + K G  V V + +     
Sbjct: 196 IRTGVVKNLTDFGAFIDLGGA-DGLLHISEMSWGRIENPKKLFKPGQEVEVLVKEISGE- 253

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+ K  ++N  K
Sbjct: 254 RIALTRKFPNENPWK 268


>gi|209964723|ref|YP_002297638.1| Tex-like protein, transcription accessory protein (S1 RNA binding
           domain) [Rhodospirillum centenum SW]
 gi|209958189|gb|ACI98825.1| Tex-like protein, transcription accessory protein (S1 RNA binding
           domain) [Rhodospirillum centenum SW]
          Length = 796

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHISQLS   V     VVK GD V VK+L+ D  R
Sbjct: 652 VLEGVVTNVTNFGAFVDVGVHQDGLVHISQLSHTFVKDPRAVVKAGDIVKVKVLEVDLKR 711

Query: 681 GKIKLSMKVVDQ 692
            ++ L+MK+ +Q
Sbjct: 712 RRVALTMKLDEQ 723


>gi|325690815|gb|EGD32816.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115]
          Length = 710

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  DR 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-DRE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|262380461|ref|ZP_06073615.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262297907|gb|EEY85822.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 790

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 13/125 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRS------ITDVPEVNK--IYK 624
           I+ Q      IDD   +      LAE+E      R   R+      ITDV ++ +    +
Sbjct: 592 IIRQVDPNQFIDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDDITDVKQLTEGMQLE 651

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V +FGAFV     +DGLVHIS+L+ E V+    +VK G  V V+++  D +R ++
Sbjct: 652 GVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIVQVRVIQVDAERNRV 711

Query: 684 KLSMK 688
            LSM+
Sbjct: 712 NLSMR 716


>gi|319424533|gb|ADV52607.1| Tex-like protein [Shewanella putrefaciens 200]
          Length = 813

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  I +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++
Sbjct: 683 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 740

Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696
            D +R +I LSM++   ++QN  +
Sbjct: 741 VDVERRRIGLSMRLDEAIEQNNAQ 764


>gi|145589404|ref|YP_001156001.1| RNA-binding S1 domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047810|gb|ABP34437.1| RNA binding S1 domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 784

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+ + + I +G V  V  FGAFV     +DGLVHIS LS   V     VVK 
Sbjct: 651 KEGVEKISDL-KADMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKA 709

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G  V VK+L+ D+ R +I L+M++ D+
Sbjct: 710 GQVVKVKVLEVDEKRKRIALTMRLSDE 736


>gi|55736656|gb|AAV60298.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
 gi|55738547|gb|AAV62188.1| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
          Length = 417

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 6/87 (6%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           IEA +E+   +    EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      
Sbjct: 198 IEARKEVFSKL----EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKS 252

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMK 688
           VV  GD + VK+L  D+  G++ LS+K
Sbjct: 253 VVSVGDEIEVKVLAIDEEAGRVSLSLK 279



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFG FV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 298 VIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 357

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 358 ERVSLSIKALEE 369


>gi|331005891|ref|ZP_08329243.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC1989]
 gi|330420335|gb|EGG94649.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC1989]
          Length = 780

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E + ++ D VP +  I +G +  V +FGAFV     +DGLVHIS LS   V     VVK
Sbjct: 637 KEGVETLKDLVPAM--ILEGVITNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPRTVVK 694

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            GD V VK+++ D  R +I LSM++ D+
Sbjct: 695 AGDIVKVKVMEVDIPRKRIALSMRLEDE 722


>gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S]
 gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S]
          Length = 490

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D D
Sbjct: 210 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368


>gi|300855310|ref|YP_003780294.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300435425|gb|ADK15192.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 637

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV+  +FGAFV      D LVHISQ+S +R+ K  DV+K G  +  K+L+ + D  KI
Sbjct: 568 GKVVRFANFGAFVELEPGVDALVHISQISHKRIDKPEDVLKIGQEIKAKILEVNKDSEKI 627

Query: 684 KLSMKVVDQ 692
            LS+K VD+
Sbjct: 628 ALSIKEVDE 636



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +I +S    +   RE +   T +V E + +  G+V ++ DFGAFV   G  DGL+H+S+L
Sbjct: 451 RIVASRRDLLRMEREKMEEQTWNVLEKDTVVDGEVRRLTDFGAFVDVQGV-DGLLHVSEL 509

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD 678
           S  RV K SDV+K GD + V +LD D
Sbjct: 510 SWGRVGKPSDVLKIGDKIKVYILDID 535


>gi|251778389|ref|ZP_04821309.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243082704|gb|EES48594.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 635

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G+VV++ DFGAF+      DGLVHIS++S  R+A  S+V+  G+ V  K+L+ D+  K +
Sbjct: 569 GKVVRINDFGAFIELEPGVDGLVHISKISFNRIAHPSEVLSVGEEVKAKILEVDEENKRV 628

Query: 684 KLSMK 688
            LS+K
Sbjct: 629 SLSIK 633



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + K +V +   FGAF+   G  DGL+H+SQ+S   V    D++K+G+ + VK++  D   
Sbjct: 481 VIKAEVKRFTKFGAFLDVNGI-DGLLHLSQISWNHVKNIEDILKKGEMIEVKIIALDKEN 539

Query: 682 KIKLSM 687
           K KLS+
Sbjct: 540 K-KLSL 544


>gi|218702152|ref|YP_002409781.1| transcriptional accessory protein [Escherichia coli IAI39]
 gi|218372138|emb|CAR20000.1| transcriptional accessory protein [Escherichia coli IAI39]
          Length = 773

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L  D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLKVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|210631374|ref|ZP_03296877.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279]
 gi|210160057|gb|EEA91028.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279]
          Length = 386

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD D +R +
Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRER 269

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   ++  + +V
Sbjct: 270 ISLGLKQTTEDPWRALV 286



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V K++ FGAFV      +GLVHIS+++ + V + + V   G  V VK+++ D
Sbjct: 291 VGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQVTAVGAKVQVKVMEID 350

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            DR +I LSMK   +  G  I
Sbjct: 351 LDRRRISLSMKSAAETLGIEI 371


>gi|146294886|ref|YP_001185310.1| RNA-binding S1 domain-containing protein [Shewanella putrefaciens
           CN-32]
 gi|145566576|gb|ABP77511.1| RNA binding S1 domain protein [Shewanella putrefaciens CN-32]
          Length = 813

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  I +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++
Sbjct: 683 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 740

Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696
            D +R +I LSM++   ++QN  +
Sbjct: 741 VDVERRRIGLSMRLDEAIEQNNAQ 764


>gi|330720456|gb|EGG98764.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC2047]
          Length = 561

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 7/97 (7%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + +I D+ + + + +G +  V +FGAFV     +DGLVHIS L+ + V     VVK 
Sbjct: 426 KEGVETIKDL-QPDMVLEGTITNVTNFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKA 484

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD-----QNTGKP 697
           GD V VK++  D +R +I L+M++ D     Q  G+P
Sbjct: 485 GDIVKVKVMAVDVERKRIGLTMRMADSAADQQGQGEP 521


>gi|317050911|ref|YP_004112027.1| RNA-binding S1 domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945995|gb|ADU65471.1| RNA binding S1 domain protein [Desulfurispirillum indicum S5]
          Length = 544

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL   + + +   +I +  E   + KG+VV  +D+GAFV      +GL+HIS++S T RV
Sbjct: 269 SLGYKQKSDDPWNNIAERCECGTVVKGKVVSFVDYGAFVEIEPGIEGLIHISEMSWTSRV 328

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693
              S V+K GD V V++LD D    ++ LS++ V  N
Sbjct: 329 RSPSQVLKIGDEVEVRILDIDSENRRLSLSLRAVRPN 365



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG++  + +FGAF+      DGL+HIS +S  R    S++VK GD V  K+L FD
Sbjct: 376 VGTVVKGKIKNITEFGAFLGLDEGVDGLIHISDMSWSRSNHPSEIVKVGDEVEAKVLAFD 435

Query: 679 -DRGKIKLSMKVVDQN 693
            ++ ++ L +K +++N
Sbjct: 436 REKERLSLGLKQLEEN 451



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGK 682
           G VV + DFGAFV      +GL+H+S++S +R+ + SDV+  G  +   ++    +DR +
Sbjct: 468 GTVVNLTDFGAFVKLEDGVEGLLHVSEISHDRIERPSDVLSVGQQIEAAVIKMSKEDR-R 526

Query: 683 IKLSMKVVDQ 692
           I LSMK V +
Sbjct: 527 IGLSMKEVGE 536



 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  G+V  + ++G F+   G  DGL+HI+ +S  RV+  S V  EGD V V +LDF+
Sbjct: 207 LLTGRVKNITEYGVFIDL-GGFDGLLHITDISWGRVSHPSAVFSEGDEVEVVVLDFN 262


>gi|290580778|ref|YP_003485170.1| hypothetical protein SmuNN2025_1252 [Streptococcus mutans NN2025]
 gi|254997677|dbj|BAH88278.1| conserved hypothetical protein [Streptococcus mutans NN2025]
          Length = 708

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  ++D+ ++ +  +G +  V+DFGAFV      DGL+HISQ+S   V   S +V  
Sbjct: 621 RQDVLELSDL-KIGQQLEGTIRNVVDFGAFVDIGLHEDGLIHISQMSKNFVKHPSQIVAV 679

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GD  TVWV  +D  +RGK+ LS+  +++
Sbjct: 680 GDVVTVWVSKIDI-ERGKVNLSLVALNE 706


>gi|300361576|ref|ZP_07057753.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
 gi|300354195|gb|EFJ70066.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
          Length = 398

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I +G+V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D  D
Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LS+K  D N  K
Sbjct: 345 R-RISLSIKQADPNAAK 360



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V    +G+V ++  FGAFV   G  DGLVHIS++S + V K SDV+K G  V VK++   
Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGID 255

Query: 678 DDRGKIKLSMK 688
           DDR +I LS+K
Sbjct: 256 DDRHRISLSIK 266


>gi|229814996|ref|ZP_04445334.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
           13280]
 gi|229809483|gb|EEP45247.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
           13280]
          Length = 386

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD D +R +
Sbjct: 211 KGTVSSIVDFGAFVDLGGI-DGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRER 269

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   ++  + +V
Sbjct: 270 ISLGLKQTTEDPWRALV 286



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V K++ FGAFV      +GLVHIS+++ + V + + V   G  V VK+++ D
Sbjct: 291 VGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQVTAVGSKVQVKVMEID 350

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            DR +I LSMK   +  G  I
Sbjct: 351 LDRRRISLSMKSAAETLGIEI 371


>gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1]
          Length = 491

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631
           I +Q  AK+   D     +  S  A +E  +  +RS      +NK+ KGQV       ++
Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K  
Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282

Query: 691 DQN 693
            ++
Sbjct: 283 QED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D
Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370


>gi|312882892|ref|ZP_07742624.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369411|gb|EFP96931.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 767

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ++D+ E   + +G V  V +FGAFV     +DGLVHIS L+ + V+   +VVK G
Sbjct: 638 EGVNKVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKFVSDPREVVKAG 696

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ D+
Sbjct: 697 DIVKVKVMEVDVKRKRIGLSMRLNDE 722


>gi|209559042|ref|YP_002285514.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131]
 gi|209540243|gb|ACI60819.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131]
          Length = 710

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703


>gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 245

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 10/207 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E  +   S
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-MRGSRS 63

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
            +   R      Y+    +TGE  R     R+    G   R+     +  T  +P + + 
Sbjct: 64  RALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAI-LTQLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGNYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLG--HMDFKVAGTDSGITAMQMDMKI 509
             G   +   +      +  ++MD ++
Sbjct: 179 AAGGPQLALALLPASGQLALLEMDARL 205


>gi|24379213|ref|NP_721168.1| transcriptional accessory protein [Streptococcus mutans UA159]
 gi|24377125|gb|AAN58474.1|AE014917_5 conserved hypothetical protein; possible transcriptional accessory
           protein [Streptococcus mutans UA159]
          Length = 708

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  ++D+ ++ +  +G +  V+DFGAFV      DGL+HISQ+S   V   S +V  
Sbjct: 621 RQDVLELSDL-KIGQQLEGTIRNVVDFGAFVDIGLHEDGLIHISQMSKNFVKHPSQIVAV 679

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GD  TVWV  +D  +RGK+ LS+  +++
Sbjct: 680 GDVVTVWVSKIDI-ERGKVNLSLVALNE 706


>gi|150015329|ref|YP_001307583.1| RNA-binding S1 domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901794|gb|ABR32627.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 725

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D+ R
Sbjct: 650 VLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVAILEVDEKR 709

Query: 681 GKIKLSMKVVDQN 693
            +I L+MK +D++
Sbjct: 710 KRISLTMKDIDES 722


>gi|295397064|ref|ZP_06807176.1| YhgF like protein [Aerococcus viridans ATCC 11563]
 gi|294974656|gb|EFG50371.1| YhgF like protein [Aerococcus viridans ATCC 11563]
          Length = 715

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS++ST+ V+  SD V  GD   VWV  +D + +G
Sbjct: 647 QGTVRNVVDFGAFVDVGVKQDGLVHISRMSTKFVSNPSDFVSVGDIVEVWVSEVD-EKKG 705

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 706 RIGLSM 711


>gi|29828211|ref|NP_822845.1| transcription accessory protein [Streptomyces avermitilis MA-4680]
 gi|29605313|dbj|BAC69380.1| putative transcription accessory protein [Streptomyces avermitilis
           MA-4680]
          Length = 810

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 643 KEGVEKISDLAS-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKP 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 702 GDIVKVKVLDIDIPRKRISLTLRLDDE 728


>gi|306827781|ref|ZP_07461052.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
 gi|304430005|gb|EFM33043.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
          Length = 710

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703


>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
 gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
          Length = 245

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 34/245 (13%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R + A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKT 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-- 418
            +  ++   Q       Y+    +T E        RR  G  +    ++H  L QT +  
Sbjct: 66  LHDRAVINCQ-------YSMATFSTAE------RKRRPHGDRKSTEMSLH--LKQTFEAA 110

Query: 419 -----FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
                +P + + I  +I +SDG +  A V  ++LA++DAG+P+   V     G V    D
Sbjct: 111 VLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFV----D 166

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
              L+D+   E+  G     +A    G  I  +QMD ++       ++ A   A +G   
Sbjct: 167 ETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSK 226

Query: 531 ILNEM 535
           +L+E+
Sbjct: 227 VLDEV 231


>gi|157372859|ref|YP_001480848.1| RNA-binding S1 domain-containing protein [Serratia proteamaculans
           568]
 gi|157324623|gb|ABV43720.1| RNA binding S1 domain protein [Serratia proteamaculans 568]
          Length = 777

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + +++D+ +   I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK G
Sbjct: 639 EGVETLSDL-QPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ +Q
Sbjct: 698 DIVKVKVMEVDLQRKRIALSMRLDEQ 723


>gi|152988034|ref|YP_001351262.1| hypothetical protein PSPA7_5945 [Pseudomonas aeruginosa PA7]
 gi|150963192|gb|ABR85217.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 779

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|15674668|ref|NP_268842.1| hypothetical protein SPy_0580 [Streptococcus pyogenes M1 GAS]
 gi|21909945|ref|NP_664213.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
 gi|28896358|ref|NP_802708.1| hypothetical protein SPs1446 [Streptococcus pyogenes SSI-1]
 gi|71903127|ref|YP_279931.1| transcription accessory protein [Streptococcus pyogenes MGAS6180]
 gi|71910293|ref|YP_281844.1| transcription accessory protein [Streptococcus pyogenes MGAS5005]
 gi|13621785|gb|AAK33563.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21904133|gb|AAM79016.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
 gi|28811609|dbj|BAC64541.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71802222|gb|AAX71575.1| transcription accessory protein [Streptococcus pyogenes MGAS6180]
 gi|71853075|gb|AAZ51098.1| transcription accessory protein [Streptococcus pyogenes MGAS5005]
          Length = 710

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703


>gi|268319594|ref|YP_003293250.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
 gi|262397969|emb|CAX66983.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
          Length = 400

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I +G+V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D  D
Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSD 344

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LS+K  D N  K
Sbjct: 345 R-RISLSIKQADPNAAK 360



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V    +G+V ++  FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++   
Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKAGQDVKVKVIGID 255

Query: 678 DDRGKIKLSMK 688
           DD+ +I LS+K
Sbjct: 256 DDKHRISLSIK 266


>gi|284991621|ref|YP_003410175.1| RNA binding S1 domain-containing protein [Geodermatophilus obscurus
           DSM 43160]
 gi|284064866|gb|ADB75804.1| RNA binding S1 domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 488

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQV-----VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+ KGQV       +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNKLAKGQVRTGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 265 VLDVDLDRERVSLSLKATQED 285



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R      ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD +
Sbjct: 288 RQFARTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEI 347

Query: 671 WVKLLDFD-DRGKIKLSMK------VVDQNTGKP 697
            VK++D D DR +I LS+K      V D++T  P
Sbjct: 348 LVKVIDIDLDRRRISLSLKQANEGVVGDEDTFDP 381


>gi|220904477|ref|YP_002479789.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868776|gb|ACL49111.1| RNA binding S1 domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 489

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 5/106 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++  D G V+IA   L+  +A  +  + +T   E   + +G+VV++  FGAFV      +
Sbjct: 259 ISKSDKGQVRIA---LSRKQAEGDPWQDVTQRLENGAVVQGKVVRLAPFGAFVEILPGIE 315

Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVHIS+LS T+RV K  ++++ GD V VK+ + + D  +I LS++
Sbjct: 316 GLVHISELSWTKRVNKPEEILQVGDIVAVKIKEINADSRRISLSLR 361



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + ++ +   V    +G++ +   FGAF+    A +G++H+S+LS  RV    + V  
Sbjct: 189 QEQLEALLEKLGVGDTVEGKISRFAPFGAFMELDTAVEGMIHLSELSWSRVGAPDEAVSL 248

Query: 667 GDTVWVKLLDF--DDRGKIKLSM 687
           GDTV  K+L     D+G++++++
Sbjct: 249 GDTVRAKVLSISKSDKGQVRIAL 271


>gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
           DSM 43183]
 gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 487

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD ++VK++D 
Sbjct: 295 QIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKIIDI 354

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D DR +I LS+K  ++  
Sbjct: 355 DLDRRRISLSLKQANETA 372



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNTLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D +R ++ LS+K   ++
Sbjct: 265 VLDVDMERERVSLSLKATQED 285


>gi|145640544|ref|ZP_01796128.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275130|gb|EDK14992.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 770

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVHQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V VK+L+ D  R +I L+M++
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721


>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
 gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
          Length = 239

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R+DGR    +R I    G++    GS+    G  + +V V +     E Y      
Sbjct: 9   DDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYV----REAYPKHAQN 64

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
             +      YN    +  E  R G P RR +   +L   A+   +    + P   + +  
Sbjct: 65  IDKAIVKARYNMAGFSVEERKRPG-PDRRTMEISKLISEALESAI-MVERLPRAEIDVYI 122

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E+D  + +A++  +S+A+ DAG+P+     G   G         ++ D+S DED+ G
Sbjct: 123 EVLEADAGTRIASLTAASVAVADAGIPMKDLPVGCTAGKANGK----VVLDLSKDEDNYG 178

Query: 488 HMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             D  +A       I  +Q+D   G +SE      L++A    L  +  +S++  E+
Sbjct: 179 DADIPMAILPKSGKIILLQLD---GDVSEQ----ELEEAMEMMLGAMKNISRIQREA 228



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFPLTVN--YQERTYAV 70
           RP+++ TG +   +DG+    +G   +V+A  V +   K  Q+     V   Y    ++V
Sbjct: 23  RPIRITTG-VVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVKARYNMAGFSV 81

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
            +      R+   P    + IS++I  ++    +  +  + E  V I V++ D  +   +
Sbjct: 82  EE------RKRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLEAD--AGTRI 133

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
            S+ AAS A+  +G+P +   VG      NG+ VL+   DED 
Sbjct: 134 ASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLDLSKDEDN 176


>gi|68467887|ref|XP_722102.1| hypothetical protein CaO19.11516 [Candida albicans SC5314]
 gi|68468204|ref|XP_721941.1| hypothetical protein CaO19.4033 [Candida albicans SC5314]
 gi|46443884|gb|EAL03163.1| hypothetical protein CaO19.4033 [Candida albicans SC5314]
 gi|46444050|gb|EAL03328.1| hypothetical protein CaO19.11516 [Candida albicans SC5314]
          Length = 996

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKL 674
           P+V KIY G V  V ++GAF+   G   GL HISQ+S +  RV  T +V+     V+VK+
Sbjct: 73  PQVGKIYSGVVQSVTNYGAFIKIEGT-SGLCHISQMSFDGSRVEST-NVLAPNQKVFVKV 130

Query: 675 LDFDDRG-KIKLSMKVVDQNTG 695
           +D      +I LSM+ ++QNTG
Sbjct: 131 IDIQTHANRISLSMRGINQNTG 152


>gi|297521212|ref|ZP_06939598.1| putative transcriptional accessory protein [Escherichia coli OP50]
          Length = 436

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 316 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 375

Query: 681 GKIKLSMKV 689
            +I L+M++
Sbjct: 376 KRIALTMRL 384


>gi|294138936|ref|YP_003554914.1| S1 RNA binding domain-containing protein [Shewanella violacea
           DSS12]
 gi|293325405|dbj|BAJ00136.1| S1 RNA binding domain protein [Shewanella violacea DSS12]
          Length = 780

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++ D +R
Sbjct: 657 ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEIDVER 716

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ ++   KP
Sbjct: 717 KRIALTMRLDEKAGDKP 733


>gi|122921517|pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
           Pseudomonas Aeruginosa
          Length = 780

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 644 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 703 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 742


>gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
 gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus]
          Length = 245

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 66  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E+  G   +   +      I  ++MD +   + E+ +   L+ A R    +   + +V
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRV 231

Query: 539 LSE 541
           + +
Sbjct: 232 VRQ 234


>gi|116053349|ref|YP_793673.1| hypothetical protein PA14_68710 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588570|gb|ABJ14585.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 779

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|312864811|ref|ZP_07725042.1| putative ribosomal protein S1 [Streptococcus downei F0415]
 gi|311099938|gb|EFQ58151.1| putative ribosomal protein S1 [Streptococcus downei F0415]
          Length = 400

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AAR+ I S     EV  I  G+V ++  FGAFV   G  DGLVH+++LS ER      VV
Sbjct: 182 AARQEIFSKL---EVGSIVTGKVARLTSFGAFVDLGGV-DGLVHVTELSHERNVSPKSVV 237

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMK 688
             GD + VK+L  D+  G+I LS+K
Sbjct: 238 SVGDEIDVKVLAIDEEAGRISLSLK 262



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L  D D 
Sbjct: 281 VIDGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K + +
Sbjct: 341 ERVSLSIKALQE 352


>gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 484

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+LS + V     VV  GD V+VK++D D
Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVAEGIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDID 354

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 355 LERRRISLSLK 365



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 205 LNNLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVE 263

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L+ D DR ++ LS+K   ++
Sbjct: 264 ILEVDLDRERVSLSLKATQED 284


>gi|50913850|ref|YP_059822.1| transcription accessory protein [Streptococcus pyogenes MGAS10394]
 gi|50902924|gb|AAT86639.1| transcription accessory protein [Streptococcus pyogenes MGAS10394]
          Length = 710

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703


>gi|313632617|gb|EFR99603.1| 30S ribosomal protein S1 [Listeria seeligeri FSL N1-067]
 gi|313637165|gb|EFS02697.1| 30S ribosomal protein S1 [Listeria seeligeri FSL S4-171]
          Length = 381

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I++   V  + +G+VV+++ FGAFV      +GLVHISQ+S + +    +V+ EG+T+ V
Sbjct: 266 ISEKASVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGETIEV 325

Query: 673 KLLDFDDRGKIKLSMKVVD 691
           K+L+ ++  K +LS+ + D
Sbjct: 326 KVLEVNEADK-RLSLSIKD 343



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYQHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256


>gi|307571520|emb|CAR84699.1| rpsA [Listeria monocytogenes L99]
          Length = 401

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ +
Sbjct: 292 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 351

Query: 679 DRGK-IKLSMK 688
           +  K + LS+K
Sbjct: 352 EADKRLSLSIK 362



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 178 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 235

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 236 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 276


>gi|241889493|ref|ZP_04776792.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
 gi|241863800|gb|EER68183.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
          Length = 402

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V     FGAFV      +GLVHISQ+S ERV    DV+K+GD V VK+L+FD +  +
Sbjct: 297 EGVVRNTTAFGAFVEVLPDVEGLVHISQISHERVTNVEDVLKKGDKVNVKVLEFDFENER 356

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 357 LSLSIK 362



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           + E E A+++     ++ E   + +G+V ++ DFGAFV+  G  DGL+HIS++S  RV K
Sbjct: 189 ILEEEKAKKLAEVYGNINE-GDVIEGKVSRITDFGAFVN-IGEVDGLLHISEISHARVEK 246

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            +DV+  GDT+ V ++  D +  K+ LS K +
Sbjct: 247 VADVLSVGDTIKVAVIAVDKENEKVSLSAKTL 278


>gi|229550028|ref|ZP_04438753.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200]
 gi|255972809|ref|ZP_05423395.1| SSU ribosomal protein S1P [Enterococcus faecalis T1]
 gi|257422631|ref|ZP_05599621.1| 30S ribosomal protein S1 [Enterococcus faecalis X98]
 gi|312951481|ref|ZP_07770377.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102]
 gi|229304834|gb|EEN70830.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200]
 gi|255963827|gb|EET96303.1| SSU ribosomal protein S1P [Enterococcus faecalis T1]
 gi|257164455|gb|EEU94415.1| 30S ribosomal protein S1 [Enterococcus faecalis X98]
 gi|310630447|gb|EFQ13730.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102]
 gi|315152496|gb|EFT96512.1| putative ribosomal protein S1 [Enterococcus faecalis TX0031]
 gi|315155774|gb|EFT99790.1| putative ribosomal protein S1 [Enterococcus faecalis TX0043]
 gi|315158059|gb|EFU02076.1| putative ribosomal protein S1 [Enterococcus faecalis TX0312]
 gi|315169715|gb|EFU13732.1| putative ribosomal protein S1 [Enterococcus faecalis TX1342]
          Length = 403

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAF+   G  DGLVH+S+++ + V K SD +  G+ V VK+L  + D 
Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPDE 265

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 266 GRISLSIK 273



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + + 
Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351

Query: 681 GKIKLSMKVVD 691
            +I LS+K ++
Sbjct: 352 HRIALSIKALE 362


>gi|326330770|ref|ZP_08197072.1| S1 RNA binding domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325951453|gb|EGD43491.1| S1 RNA binding domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 811

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  V  FGAF+     +DGLVHIS +S + V    DVV+ GD V VK+L+ D+ R
Sbjct: 708 VLEGTVTNVAAFGAFIDIGVHQDGLVHISAMSDKFVEDPRDVVRSGDVVRVKVLEVDEAR 767

Query: 681 GKIKLSMKVVDQ-NTGKP 697
            +I L++++ D+  +G P
Sbjct: 768 KRISLTLRLNDEAPSGAP 785


>gi|258653204|ref|YP_003202360.1| 30S ribosomal protein S1 [Nakamurella multipartita DSM 44233]
 gi|258556429|gb|ACV79371.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233]
          Length = 485

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N++ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 203 LNQLGKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 261

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 262 VLDVDMDRERVSLSLKATQED 282



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV   D ++V+++D D
Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVYDGIEGLVHISELAGRHVEVPEQVVTVDDEIFVRVIDID 352

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 353 LERRRISLSLK 363


>gi|90412697|ref|ZP_01220698.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
 gi|90326272|gb|EAS42691.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
          Length = 784

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G +  V +FGAFV     +DGLVHIS LS + ++   +VVK GD V VK+++ D  R
Sbjct: 653 ILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I +SM++ D+
Sbjct: 713 KRIAMSMRMGDE 724


>gi|81429179|ref|YP_396180.1| putative transcription accessory protein, RNA-binding
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610822|emb|CAI55873.1| Putative transcription accessory protein, RNA-binding
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 725

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           N   +G V  V+DFGAFV      DGLVHISQL+   V   SD V  GD V V +L  D 
Sbjct: 650 NMALEGTVRNVIDFGAFVDIGVKHDGLVHISQLANHFVKHPSDEVSVGDVVQVWVLSVDQ 709

Query: 679 DRGKIKLSMK 688
           +R +++L+MK
Sbjct: 710 ERERVQLTMK 719


>gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24]
 gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24]
          Length = 491

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631
           I +Q  AK+   D     +  S  A +E  +  +RS      +NK+ KGQV       ++
Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K  
Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282

Query: 691 DQN 693
            ++
Sbjct: 283 QED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D
Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370


>gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6]
 gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 491

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631
           I +Q  AK+   D     +  S  A +E  +  +RS      +NK+ KGQV       ++
Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K  
Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282

Query: 691 DQN 693
            ++
Sbjct: 283 QED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D
Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370


>gi|218894303|ref|YP_002443173.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           LESB58]
 gi|218774532|emb|CAW30349.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           LESB58]
          Length = 779

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
          Length = 492

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVM 631
           I +Q  AK+   D     +  S  A +E  +  +RS      +NK+ KGQV       ++
Sbjct: 168 IGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIV 223

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K  
Sbjct: 224 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKAT 282

Query: 691 DQN 693
            ++
Sbjct: 283 QED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D
Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370


>gi|296392058|ref|ZP_06881533.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           PAb1]
          Length = 779

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|139474204|ref|YP_001128920.1| transcription accessory protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134272451|emb|CAM30708.1| putative transcription accessory protein [Streptococcus pyogenes
           str. Manfredo]
          Length = 710

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703


>gi|119475503|ref|ZP_01615856.1| Transcriptional accessory protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451706|gb|EAW32939.1| Transcriptional accessory protein [marine gamma proteobacterium
           HTCC2143]
          Length = 777

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ +  I+D+ E   I +G V  V +FGAF+     +DGLVHIS LS   V     VVK 
Sbjct: 642 KDGVEKISDLVE-EMILEGTVTNVTNFGAFIDIGVHQDGLVHISALSNTFVKDPRAVVKA 700

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+++ D  R +I LSM++ D+
Sbjct: 701 GDIVRVKVMEVDTQRKRIALSMRLDDK 727


>gi|46908171|ref|YP_014560.1| 30S ribosomal protein S1 [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224542|ref|YP_002758649.1| hypothetical protein Lm4b_01955 [Listeria monocytogenes Clip81459]
 gi|254825567|ref|ZP_05230568.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-194]
 gi|254852840|ref|ZP_05242188.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-503]
 gi|254931891|ref|ZP_05265250.1| 30S ribosomal protein S1 [Listeria monocytogenes HPB2262]
 gi|255521524|ref|ZP_05388761.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-175]
 gi|300763752|ref|ZP_07073749.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N1-017]
 gi|46881441|gb|AAT04737.1| putative ribosomal protein S1 [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|225877004|emb|CAS05713.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606170|gb|EEW18778.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-503]
 gi|293583443|gb|EFF95475.1| 30S ribosomal protein S1 [Listeria monocytogenes HPB2262]
 gi|293594810|gb|EFG02571.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-194]
 gi|300515488|gb|EFK42538.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N1-017]
 gi|328466286|gb|EGF37443.1| 30S ribosomal protein S1 [Listeria monocytogenes 1816]
 gi|328472781|gb|EGF43630.1| 30S ribosomal protein S1 [Listeria monocytogenes 220]
 gi|332312378|gb|EGJ25473.1| 30S ribosomal protein S1 [Listeria monocytogenes str. Scott A]
          Length = 381

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ +
Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331

Query: 679 DRGK-IKLSMK 688
           +  K + LS+K
Sbjct: 332 EADKRLSLSIK 342



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256


>gi|28211189|ref|NP_782133.1| 30S ribosomal protein S1 [Clostridium tetani E88]
 gi|28203629|gb|AAO36070.1| SSU ribosomal protein S1P [Clostridium tetani E88]
          Length = 387

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G VVK+++FGAFV      +GL+HIS++S ER+ K  +V+K GD + VK+LD +    K+
Sbjct: 288 GTVVKLVEFGAFVELKDGLEGLLHISEISEERILKPEEVLKIGDKIKVKILDINKENRKM 347

Query: 684 KLSMKVVDQNT 694
            LS K  +  +
Sbjct: 348 SLSKKAAEDKS 358



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 6/91 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+ +++ +  ++N    G+VV+++ FG FV   G  +GLVH+S LS +RV   SD+VKEG
Sbjct: 190 ELWKTLKEGEKIN----GKVVRLVKFGVFVDIGGI-EGLVHLSDLSWKRVNNPSDIVKEG 244

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V +L+ D  R ++ L++K + ++  K 
Sbjct: 245 DEVEVFILNVDKKRERLGLALKDIKEDPWKK 275


>gi|320539829|ref|ZP_08039488.1| putative transcriptional accessory protein [Serratia symbiotica
           str. Tucson]
 gi|320030015|gb|EFW12035.1| putative transcriptional accessory protein [Serratia symbiotica
           str. Tucson]
          Length = 776

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ +Q
Sbjct: 712 KRIALSMRLDEQ 723


>gi|317497528|ref|ZP_07955847.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895211|gb|EFV17374.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 632

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K++DF
Sbjct: 550 KVGSVVTGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDF 609

Query: 678 -DDRGKIKLSMKVV 690
             D  KI LSMK +
Sbjct: 610 KKDDKKISLSMKAL 623



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + A +E  + + +  EV    +G V  V DFGAF+   GA DGL+HIS++S  RV     
Sbjct: 452 VAAKKEKQKELFEKIEVGMKVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 510

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V   GD V V + D     KI LS+K  ++N
Sbjct: 511 VFNIGDKVTVLIKDIQGE-KIALSLKFPEEN 540


>gi|227889870|ref|ZP_04007675.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
 gi|227849734|gb|EEJ59820.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
          Length = 400

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           I +G+V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D  D
Sbjct: 285 IIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSD 344

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LS+K  D N  K
Sbjct: 345 R-RISLSIKQADPNAAK 360



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V    +G+V ++  FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++   
Sbjct: 197 VGDTVEGKVSRLTGFGAFVDVGGV-DGLVHISEISYKHIDKPSDVLKAGQDVKVKVIGID 255

Query: 678 DDRGKIKLSMK 688
           DDR +I LS+K
Sbjct: 256 DDRHRISLSIK 266


>gi|254993213|ref|ZP_05275403.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-064]
          Length = 381

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ +
Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331

Query: 679 DRGK-IKLSMK 688
           +  K + LS+K
Sbjct: 332 EADKRLSLSIK 342



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256


>gi|254452060|ref|ZP_05065497.1| RNA binding S1 domain protein [Octadecabacter antarcticus 238]
 gi|198266466|gb|EDY90736.1| RNA binding S1 domain protein [Octadecabacter antarcticus 238]
          Length = 773

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 19/144 (13%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIEAA----REMIRSI 613
           R ++   G+ IR I+  T A         +DD   +      L E+E      R   ++ 
Sbjct: 576 RKIVQACGRDIRAIMGDTSALAGLRAEQFVDDSFGLPTVRDILTELEKPGRDPRPTFKTA 635

Query: 614 TDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           T    +N I         +G V  V  FGAFV     +DGLVH+SQL+   V    D+VK
Sbjct: 636 TFADGINSITDLKSGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHDIVK 695

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688
            GD V V++ + D  R +I LSM+
Sbjct: 696 AGDVVRVRVTEIDVPRKRIALSMR 719


>gi|169829725|ref|YP_001699883.1| hypothetical protein Bsph_4294 [Lysinibacillus sphaericus C3-41]
 gi|168994213|gb|ACA41753.1| hypothetical transcription accessory protein (S1 RNA binding
           domain) [Lysinibacillus sphaericus C3-41]
          Length = 723

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L  +R+    +VV  GD  TVWV+ +D   +G
Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQIDV-SKG 708

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 709 RISLTM 714


>gi|168205596|ref|ZP_02631601.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|169344206|ref|ZP_02865188.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169297664|gb|EDS79764.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170662934|gb|EDT15617.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 720

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|167766699|ref|ZP_02438752.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1]
 gi|167711636|gb|EDS22215.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1]
 gi|291558359|emb|CBL37159.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [butyrate-producing bacterium SSC/2]
          Length = 632

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K++DF
Sbjct: 550 KVGSVVTGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDF 609

Query: 678 -DDRGKIKLSMKVV 690
             D  KI LSMK +
Sbjct: 610 KKDDKKISLSMKAL 623



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + A +E  + + +  E     +G V  V DFGAF+   GA DGL+HIS++S  RV     
Sbjct: 452 VAAKKEKQKELFEKIEAGMKVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 510

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V   GD V V + D     KI LS+K  ++N
Sbjct: 511 VFNIGDKVTVLIKDIQGE-KIALSLKFPEEN 540


>gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 400

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V DFG FV   GA DGLVH+S++S  RV   S+V+K GD V V +L+ D +R
Sbjct: 232 VREGVVSSVCDFGVFVDIGGA-DGLVHLSEISWSRVKHPSEVLKVGDKVKVSILNIDHER 290

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 291 KRIALSIK 298



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I +G V ++  FGAFV      +GL+H+S++  ER+    DV+ EG  V  +++  
Sbjct: 313 QLGQIVEGTVTQLASFGAFVRIEDGVEGLIHVSEMGDERIQHPRDVLSEGQVVQARIIRI 372

Query: 678 DD-RGKIKLSMKV 689
           D  R ++ LS+++
Sbjct: 373 DPARKRMGLSLRL 385


>gi|92114773|ref|YP_574701.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
 gi|91797863|gb|ABE60002.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
          Length = 804

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + ++ D+ E   + +G V  V  FGAFV     +DGLVHIS LS   +     VVK 
Sbjct: 669 RDGVETLKDL-EPGMVLEGSVTNVTHFGAFVDIGVHQDGLVHISALSETFIEDPRQVVKA 727

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+++ D +R +I LSM++ D
Sbjct: 728 GDIVKVKVMEVDLERARIGLSMRMGD 753


>gi|15600394|ref|NP_253888.1| hypothetical protein PA5201 [Pseudomonas aeruginosa PAO1]
 gi|9951507|gb|AAG08586.1|AE004933_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 779

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|107104303|ref|ZP_01368221.1| hypothetical protein PaerPA_01005377 [Pseudomonas aeruginosa PACS2]
 gi|254243916|ref|ZP_04937238.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126197294|gb|EAZ61357.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 779

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|116511133|ref|YP_808349.1| transcriptional accessory protein [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106787|gb|ABJ71927.1| Transcriptional accessory protein [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 713

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLL 675
           ++++  +G V  V+DFGAF+      DGL H+S LS   V   SDVV  G   TVWVK L
Sbjct: 636 QIDQQLEGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSL 695

Query: 676 DFDDRGKIKLSM 687
           D   RGKI L++
Sbjct: 696 DL-QRGKINLTL 706


>gi|313678983|ref|YP_004056722.1| SSU ribosomal protein s1p [Oceanithermus profundus DSM 14977]
 gi|313151698|gb|ADR35549.1| SSU ribosomal protein S1P [Oceanithermus profundus DSM 14977]
          Length = 597

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+VV+V DFGAFV+  GA DGL+H S+LS  R     +VVK GD V  K+L  D +R +
Sbjct: 265 EGKVVEVTDFGAFVNL-GAIDGLIHRSELSWGRFEHPREVVKVGDEVKAKVLSVDKERER 323

Query: 683 IKLSMKVV 690
           + LS+K +
Sbjct: 324 VNLSIKAL 331



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           EV +  KG+VV +  FGAFV      +GL+HI+++S T+R    S+V+KEG+ V   +L 
Sbjct: 344 EVGQRIKGKVVGLTPFGAFVEIEPGLEGLIHITEMSWTKRPRHPSEVLKEGEEVEAVVLR 403

Query: 677 FD 678
            D
Sbjct: 404 ID 405



 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + KG++  V DFG FV      +GLVHIS+L  E +   ++  K+G+ + V +L+ D
Sbjct: 435 VVKGKITGVTDFGVFVEIEDGIEGLVHISELDYEHIDNPAEKFKKGEELEVVVLNID 491


>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
          Length = 403

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  V DFGAFV   GA DGLVH+S++S  R+    +V+K GD V V +L  D+ R
Sbjct: 239 VREGIVTSVCDFGAFVDIGGA-DGLVHLSEISWSRIKHPGEVLKPGDKVQVYVLSIDNER 297

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 298 KRIALSLK 305



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ +G V ++  FGAFV      +GL+H+S++   RV    DV++EGD V  +++  
Sbjct: 320 QIGQMVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDVVQARIIRI 379

Query: 678 DD-RGKIKLSMK 688
           D  R +I LSM+
Sbjct: 380 DPARKRIGLSMR 391


>gi|254238102|ref|ZP_04931425.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170033|gb|EAZ55544.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 779

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|330447155|ref|ZP_08310805.1| transcriptional accessory protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491346|dbj|GAA05302.1| transcriptional accessory protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 772

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G +  V +FGAFV     +DGLVHIS LS + V+   +VVK GD V VK+++ D  R
Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I +SM++ D+
Sbjct: 713 KRIGMSMRLSDE 724


>gi|323970005|gb|EGB65280.1| tex protein containing protein [Escherichia coli TA007]
          Length = 815

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKV 689
            +I L+M++
Sbjct: 713 KRIALTMRL 721


>gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
 gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
          Length = 248

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +DA VP +K PV    A  ++G++++G   + L
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGGTVLDL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           + I   ED    +D  +  T SG
Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196


>gi|192360642|ref|YP_001983623.1| S1 RNA binding domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686807|gb|ACE84485.1| S1 RNA binding domain protein [Cellvibrio japonicus Ueda107]
          Length = 776

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  ITD VP +  I +G V  V +FGAFV     +DGLVHIS LS   +    D VK
Sbjct: 643 QEGVEEITDLVPGM--ILEGTVTNVTNFGAFVDIGVHQDGLVHISALSHTFIKDPRDAVK 700

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            G+ V VK+++ D  R +I LSM++ D
Sbjct: 701 AGEIVKVKVMEVDVPRKRIALSMRLDD 727


>gi|153871035|ref|ZP_02000305.1| RNA binding S1 domain protein [Beggiatoa sp. PS]
 gi|152072497|gb|EDN69693.1| RNA binding S1 domain protein [Beggiatoa sp. PS]
          Length = 836

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I +I D+ E + + +G V  V +FGAFV      DGLVHIS LS + V     VVK 
Sbjct: 679 KEGIENIEDL-EADMVLEGVVTNVTNFGAFVDVGVHHDGLVHISALSRDYVKDPRAVVKA 737

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+L+ D  R ++ L+M
Sbjct: 738 GDVVKVKVLEIDLKRQRVALTM 759


>gi|145635345|ref|ZP_01791047.1| transcription elongation factor GreB [Haemophilus influenzae
           PittAA]
 gi|145267351|gb|EDK07353.1| transcription elongation factor GreB [Haemophilus influenzae
           PittAA]
          Length = 770

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V VK+L+ D  R +I L+M++
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721


>gi|299756328|ref|XP_001829254.2| ATP-dependent RNA helicase DHX8 [Coprinopsis cinerea okayama7#130]
 gi|298411627|gb|EAU92580.2| ATP-dependent RNA helicase DHX8 [Coprinopsis cinerea okayama7#130]
          Length = 1160

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P V KIY+G+V  + DFGAFV      G  +G+VH+S +    R    +D++  G  V V
Sbjct: 198 PVVFKIYEGKVAGIKDFGAFVQLEGVAGRVEGMVHVSNIQAGARANSAADLLSRGQRVKV 257

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K++     G+I LSMK VDQ TG+
Sbjct: 258 KVMSVAG-GRIGLSMKDVDQVTGR 280


>gi|178847555|pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
           Aeruginosa, Crystal Form I
 gi|178847556|pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
           Aeruginosa, Crystal Form 2
          Length = 785

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK 
Sbjct: 643 QEGVESLKDL-KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD--------QNTGKP 697
           GD V VK+++ D  R ++ LSM++ D        Q  G+P
Sbjct: 702 GDIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRP 741


>gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
 gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
          Length = 245

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   G T+ I   ++    +E+    L    + 
Sbjct: 8   RPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASV----EEKVPGWLKDQGKG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATG  +   A   ++ G      RL  R++  V+   A     ++I  +
Sbjct: 64  WVTAEYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           +T++DG +  A++ G+ +AL DA             P+   VA +++G+ +     + ++
Sbjct: 124 VTQADGGTRCASITGAYVALADAVNWLIKNGSLEKSPLKGQVAALSVGIYEG----VPVA 179

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D   DEDHL   D  V  TD+G
Sbjct: 180 DFDYDEDHLSDTDMNVVMTDAG 201


>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
          Length = 499

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 210 LNALAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 268

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 269 VLDVDMDRERVSLSLKATQED 289



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+    V VK++D D
Sbjct: 300 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDID 359

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 360 LERRRISLSLKQANE 374


>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
 gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
          Length = 497

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 210 LNALAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 268

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 269 VLDVDMDRERVSLSLKATQED 289



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+    V VK++D D
Sbjct: 300 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDID 359

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 360 LERRRISLSLKQANE 374


>gi|257791221|ref|YP_003181827.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|257475118|gb|ACV55438.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
          Length = 717

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVH+S+++   V   S+VV  GD  TVWV  +D  DRG+
Sbjct: 649 GTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID-KDRGR 707

Query: 683 IKLSM 687
           I LSM
Sbjct: 708 ISLSM 712


>gi|289523052|ref|ZP_06439906.1| SSU ribosomal protein S1P [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503595|gb|EFD24759.1| SSU ribosomal protein S1P [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 511

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +VVK++DFGAFV      +GL+HISQ+S   +   S V+K+GD V  ++L+ D +  +I+
Sbjct: 396 RVVKIVDFGAFVEIESGIEGLIHISQISRRHIDDVSKVLKKGDEVKARILEIDPNEKRIR 455

Query: 685 LSMKVVDQ 692
           LS+K +++
Sbjct: 456 LSIKALEE 463



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           +KI+ G++   +DFGAFV      +GL+HIS +S   +    +V+K+G  + V++LD D 
Sbjct: 306 DKIH-GRITNTVDFGAFVEIKPGVEGLIHISDISWGHIDHPREVLKKGQDIEVQVLDIDL 364

Query: 679 DRGKIKLSMK 688
           D+ +I L  K
Sbjct: 365 DQKRISLGYK 374


>gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|182624039|ref|ZP_02951827.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177910932|gb|EDT73286.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 720

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171]
          Length = 248

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +DA VP +K PV    A  ++G++++G   + L
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGGTVLDL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           + I   ED    +D  +  T SG
Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196


>gi|90581399|ref|ZP_01237194.1| hypothetical protein VAS14_21752 [Vibrio angustum S14]
 gi|90437376|gb|EAS62572.1| hypothetical protein VAS14_21752 [Vibrio angustum S14]
          Length = 774

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G +  V +FGAFV     +DGLVHIS LS + V+   +VVK GD V VK+++ D  R
Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I +SM++ D+
Sbjct: 713 KRIGMSMRLSDE 724


>gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 1 [Canis familiaris]
          Length = 245

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 66  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E+  G   +   +      I  ++MD +   + E+ +   L+ A R    +   + +V
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRV 231

Query: 539 LSE 541
           + +
Sbjct: 232 VRQ 234


>gi|126651478|ref|ZP_01723682.1| hypothetical protein BB14905_07339 [Bacillus sp. B14905]
 gi|126591731|gb|EAZ85827.1| hypothetical protein BB14905_07339 [Bacillus sp. B14905]
          Length = 723

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L  +R+    +VV  GD  TVWV+ +D   +G
Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQIDV-SKG 708

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 709 RISLTM 714


>gi|94988103|ref|YP_596204.1| transcription accessory protein [Streptococcus pyogenes MGAS9429]
 gi|94991990|ref|YP_600089.1| transcription accessory protein [Streptococcus pyogenes MGAS2096]
 gi|94541611|gb|ABF31660.1| transcription accessory protein (S1 RNA binding domain)
           [Streptococcus pyogenes MGAS9429]
 gi|94545498|gb|ABF35545.1| transcription accessory protein [Streptococcus pyogenes MGAS2096]
          Length = 717

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 630 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 688

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 689 GDLVTVWVSKIDL-DRHKVNLSL 710


>gi|212637532|ref|YP_002314057.1| RNA binding S1 [Shewanella piezotolerans WP3]
 gi|212559016|gb|ACJ31470.1| RNA binding S1 [Shewanella piezotolerans WP3]
          Length = 777

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ + + I +G V  V +FGAFV     +DGLVHIS ++ + +     VVK 
Sbjct: 640 KEGVEQINDL-KPDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKA 698

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V VK+++ D +R +I LSM++ D+    P
Sbjct: 699 GDIVKVKVMEVDAERRRIGLSMRLTDKAGEAP 730


>gi|94993898|ref|YP_601996.1| transcription accessory protein [Streptococcus pyogenes MGAS10750]
 gi|94547406|gb|ABF37452.1| transcription accessory protein [Streptococcus pyogenes MGAS10750]
          Length = 717

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 630 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 688

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 689 GDLVTVWVSKIDL-DRHKVNLSL 710


>gi|19745695|ref|NP_606831.1| hypothetical protein spyM18_0648 [Streptococcus pyogenes MGAS8232]
 gi|19747830|gb|AAL97330.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 710

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703


>gi|16272511|ref|NP_438725.1| transcription accessory protein [Haemophilus influenzae Rd KW20]
 gi|2501167|sp|P71353|Y568_HAEIN RecName: Full=Uncharacterized protein HI_0568
 gi|1573555|gb|AAC22226.1| transcription accessory protein (tex) [Haemophilus influenzae Rd
           KW20]
          Length = 762

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622
           G+V Q  AK  ID+   +        E+E                E +  ITD+ +   I
Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R 
Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713

Query: 682 KIKLSMKV 689
           +I L+M++
Sbjct: 714 RIALTMRL 721


>gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|301169284|emb|CBW28881.1| predicted transcriptional accessory protein [Haemophilus influenzae
           10810]
          Length = 770

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V VK+L+ D  R +I L+M++
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721


>gi|92116616|ref|YP_576345.1| RNA binding S1 [Nitrobacter hamburgensis X14]
 gi|91799510|gb|ABE61885.1| RNA binding S1 [Nitrobacter hamburgensis X14]
          Length = 778

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I ++ DV +   I +G V  V  FGAFV     +DGL+HIS +S   V     VVK 
Sbjct: 639 KEGIETLKDV-KPGMILEGAVTNVAAFGAFVDIGVHQDGLIHISAMSKSFVKDPRAVVKS 697

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V VK+L+ D  R +I L++++ D+  GK
Sbjct: 698 GDVVKVKVLEVDVARKRIALTLRLDDELGGK 728


>gi|323447671|gb|EGB03584.1| hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens]
          Length = 328

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D+ E N+ Y G++  +  +GAFV      DGLVHIS+LS   V   + VVKEGD V V
Sbjct: 62  LADLVEGNE-YAGKITGLAAYGAFVDIGAQSDGLVHISELSASYVDDVASVVKEGDDVTV 120

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKP 697
           ++L   D GK +LS+ +  +    P
Sbjct: 121 RILKI-DSGKKQLSLSMKPEGAEAP 144



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A  E +R   D  +  +   G V  V+++GAFV+     DGLVHIS++S  RV      
Sbjct: 156 KAGAEELRKYQDA-DPAEFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAE 214

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           +  GD V V+++D D D+  + L+M      T  P
Sbjct: 215 LSVGDEVKVRIIDVDLDKATLGLAMNTYRDPTAPP 249


>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
 gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
          Length = 246

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 14/186 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR S  +R + A++G+  +  GS+   +G+T+A+  V  G  E    V  
Sbjct: 6   IISDQGYRIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATV-YGPHE----VRK 60

Query: 366 LSGTQRNDFMM---HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             G  ++D  +    ++    +TGE        RR        R+    V+  T  FP +
Sbjct: 61  GRGKIQHDRAVVNCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIV-TELFPRS 119

Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  +I ++DG +  A V  ++LA++DAG+P+   V     G ++D      L DIS 
Sbjct: 120 QIDIYVQILQADGGNYCACVNAATLAVIDAGIPMKDYVCACTAGFIQDSP----LLDISY 175

Query: 482 DEDHLG 487
            E+  G
Sbjct: 176 VEESAG 181


>gi|319441361|ref|ZP_07990517.1| putative transcriptional accessory protein [Corynebacterium
           variabile DSM 44702]
          Length = 791

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+     + +G V  V  FGAFV     +DGLVH+S ++  RV    +VV+ G
Sbjct: 646 EGIEKISDLTP-GMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMAERRVNDPHEVVRTG 704

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             V VK+++ D +R +I LS+++ D+  GKP
Sbjct: 705 QVVKVKVMEVDVERQRIGLSLRLTDE-PGKP 734


>gi|94989984|ref|YP_598084.1| transcription accessory protein [Streptococcus pyogenes MGAS10270]
 gi|94543492|gb|ABF33540.1| transcription accessory protein [Streptococcus pyogenes MGAS10270]
          Length = 717

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 630 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 688

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 689 GDLVTVWVSKIDL-DRHKVNLSL 710


>gi|325578217|ref|ZP_08148352.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
 gi|325159953|gb|EGC72082.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
          Length = 549

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQILENLAEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPN 352


>gi|301156123|emb|CBW15594.1| 30S ribosomal subunit protein S1 [Haemophilus parainfluenzae T3T1]
          Length = 549

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQILENLAEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPN 352


>gi|189425204|ref|YP_001952381.1| ribosomal protein S1 [Geobacter lovleyi SZ]
 gi|189421463|gb|ACD95861.1| ribosomal protein S1 [Geobacter lovleyi SZ]
          Length = 573

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  +L E E A     ++  + E  +I +G V  + ++GAFV   G  DGL+H++
Sbjct: 179 GNIVLSRRALLEEERAESRKATLEKLSE-GQIMQGVVKNLTEYGAFVDLGGV-DGLLHVT 236

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S  RV K +DV+K G  V VK+L FD ++GK+ + +K
Sbjct: 237 DISWGRVGKPADVLKPGQEVNVKILKFDREKGKVSVGIK 275



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++  G+VV +MD+GAF+      +GLVH+S++S T+RV K +D++  GD V V +L
Sbjct: 290 PEGTRV-SGKVVSLMDYGAFIELESGIEGLVHVSEMSWTKRVRKAADMLNVGDQVDVVVL 348

Query: 676 DFDDRG-KIKLSMKVVDQNTGKPI 698
             D +  KI L +K V+ N  + I
Sbjct: 349 GVDLQNRKISLGLKQVNDNPWQSI 372



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V    DFG FV      +GL+H+S+LS E+V    D    GD++   +L+ D R  +I
Sbjct: 471 GKVASTTDFGVFVEIEEGIEGLIHVSELSREKVPSAKDFAIVGDSIEAVVLNADSRERRI 530

Query: 684 KLSMK 688
            LS+K
Sbjct: 531 SLSVK 535



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDT 669
           +SI +   V    +GQ+  + DFG F+      DGLVH+S +S T+RV    DV  +GD 
Sbjct: 370 QSIAERYPVGTKLEGQIKNMTDFGMFIGIEEGIDGLVHVSDISWTKRVKHPGDVYSKGDL 429

Query: 670 VWVKLLDFDDRG-KIKLSMK 688
           V   +L  D +  ++ L +K
Sbjct: 430 VQAVVLKVDPQNERVSLGIK 449


>gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|309972281|gb|ADO95482.1| Probable transcription accessory protein Tex [Haemophilus
           influenzae R2846]
          Length = 770

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V VK+L+ D  R +I L+M++
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721


>gi|253576861|ref|ZP_04854186.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843728|gb|EES71751.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 156

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKIGDMVTVKVINV 63

Query: 678 DDRGKIKLSMK 688
           D  GKI LS+K
Sbjct: 64  DKDGKIGLSIK 74


>gi|157373314|ref|YP_001471914.1| RNA-binding S1 domain-containing protein [Shewanella sediminis
           HAW-EB3]
 gi|157315688|gb|ABV34786.1| RNA binding S1 domain protein [Shewanella sediminis HAW-EB3]
          Length = 804

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  + D+ +++ I +G V  V +FGAFV     +DGLVHIS L+ + V+    VVK 
Sbjct: 661 KEGVEEVKDL-KLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKA 719

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V VK++  D +R +I LSM++ ++    P
Sbjct: 720 GDVVKVKVMQVDVERKRIGLSMRLDEKAADMP 751


>gi|329723961|gb|EGG60486.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU144]
 gi|329733042|gb|EGG69381.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU028]
          Length = 133

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
 gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
          Length = 255

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I      L+   GS L   GDT+ +  V++     E     L G  +
Sbjct: 1   MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSV----QESVPPFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G    R     R+  RA+   L  T     T  I  
Sbjct: 57  GWITAEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA       GV    PI   VA +++G+V D     IL
Sbjct: 117 DVLQADGGTRTAAITGAFVALADAVIKLYTEGVLTTTPIKDFVAAVSVGIVDDQ----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSGI 500
            D++ +ED    +D  V  T SG+
Sbjct: 173 LDLNFEEDSRAKVDMNVVATGSGM 196


>gi|217963910|ref|YP_002349588.1| 30S ribosomal protein S1-like protein [Listeria monocytogenes
           HCC23]
 gi|217333180|gb|ACK38974.1| putative 30S ribosomal protein S1-like protein [Listeria
           monocytogenes HCC23]
          Length = 381

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ +
Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331

Query: 679 DRGK-IKLSMK 688
           +  K + LS+K
Sbjct: 332 EADKRLSLSIK 342



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256


>gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium sp. P08]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
          Length = 498

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 227 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMD 285

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 286 RERVSLSLKATQED 299



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   D V VK++D 
Sbjct: 309 QIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDI 368

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS+K
Sbjct: 369 DLDRRRISLSLK 380


>gi|260581014|ref|ZP_05848837.1| transcription accessory protein [Haemophilus influenzae RdAW]
 gi|260092373|gb|EEW76313.1| transcription accessory protein [Haemophilus influenzae RdAW]
          Length = 770

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622
           G+V Q  AK  ID+   +        E+E                E +  ITD+ +   I
Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R 
Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713

Query: 682 KIKLSMKV 689
           +I L+M++
Sbjct: 714 RIALTMRL 721


>gi|254496032|ref|ZP_05108934.1| transcription accessory protein [Legionella drancourtii LLAP12]
 gi|254354743|gb|EET13376.1| transcription accessory protein [Legionella drancourtii LLAP12]
          Length = 780

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 7/90 (7%)

Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V ++N +++G +++     V +FGAFV     +DGLVHIS ++ + +     VVK GD V
Sbjct: 641 VEDINHLHEGMILEGVVSNVTNFGAFVDIGVHQDGLVHISAMTNKFITDPRTVVKAGDIV 700

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            VK+++ D +R +I LSMK +D +   P+V
Sbjct: 701 TVKVVEVDKERKRIGLSMK-LDDSASAPLV 729


>gi|254163335|ref|YP_003046443.1| putative transcriptional accessory protein [Escherichia coli B str.
           REL606]
 gi|253975236|gb|ACT40907.1| predicted transcriptional accessory protein [Escherichia coli B
           str. REL606]
 gi|253979392|gb|ACT45062.1| predicted transcriptional accessory protein [Escherichia coli
           BL21(DE3)]
          Length = 772

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 711

Query: 681 GKIKLSMKV 689
            +I L+M++
Sbjct: 712 KRIALTMRL 720


>gi|223044427|ref|ZP_03614460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|314932730|ref|ZP_07840100.1| general stress protein 13 [Staphylococcus caprae C87]
 gi|222442216|gb|EEE48328.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|313654560|gb|EFS18312.1| general stress protein 13 [Staphylococcus caprae C87]
          Length = 134

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|145633476|ref|ZP_01789205.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
 gi|144985845|gb|EDJ92453.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
          Length = 770

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V VK+L+ D  R +I L+M++
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721


>gi|194435878|ref|ZP_03067981.1| putative transcriptional accessory protein [Escherichia coli 101-1]
 gi|300931061|ref|ZP_07146416.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
 gi|194425421|gb|EDX41405.1| putative transcriptional accessory protein [Escherichia coli 101-1]
 gi|242378930|emb|CAQ33728.1| predicted transcriptional accessory protein [Escherichia coli
           BL21(DE3)]
 gi|300461105|gb|EFK24598.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
 gi|323959593|gb|EGB55245.1| tex protein containing protein [Escherichia coli H489]
          Length = 773

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKV 689
            +I L+M++
Sbjct: 713 KRIALTMRL 721


>gi|258615293|ref|ZP_05713063.1| S1 RNA-binding domain-containing protein [Enterococcus faecium DO]
          Length = 203

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 134 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 192

Query: 683 IKLSM 687
           I L+M
Sbjct: 193 ISLTM 197


>gi|312863902|ref|ZP_07724140.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396]
 gi|311101438|gb|EFQ59643.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396]
          Length = 400

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD V VK+L  
Sbjct: 192 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAI 250

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 251 DEEAGRVSLSLK 262



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|262370700|ref|ZP_06064025.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314500|gb|EEY95542.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 788

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 6/80 (7%)

Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           D+ EV ++ +G      V  V +FGAFV     +DGLVHIS+L+ E VA    VVK G  
Sbjct: 637 DITEVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVADPHKVVKPGQI 696

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V++L  D +R ++ LSM+
Sbjct: 697 VQVRVLTVDAERNRVNLSMR 716


>gi|168213729|ref|ZP_02639354.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|170714808|gb|EDT26990.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 720

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|168070622|ref|XP_001786877.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660263|gb|EDQ48309.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 398

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQLS+  V    DVV  GD V V +L+ D  +G+
Sbjct: 327 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSSGYVKHPMDVVSVGDNVTVWVLNVDLKKGR 386

Query: 683 IKLSMK 688
           + L+M+
Sbjct: 387 VGLTMR 392


>gi|56459392|ref|YP_154673.1| transcriptional accessory protein [Idiomarina loihiensis L2TR]
 gi|56178402|gb|AAV81124.1| Transcriptional accessory protein [Idiomarina loihiensis L2TR]
          Length = 776

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ +   + +G V  V +FGAF+     +DGLVHIS L+ + V+   +VVK 
Sbjct: 639 KEGVEKVSDL-KPGMLLEGVVTNVANFGAFIDVGVHQDGLVHISALADKFVSDPREVVKA 697

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+L+ D +R +I L+M++ D+
Sbjct: 698 GDIVKVKVLEVDIERKRIGLTMRLSDE 724


>gi|332163332|ref|YP_004299909.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667562|gb|ADZ44206.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862987|emb|CBX73120.1| protein yhgF [Yersinia enterocolitica W22703]
          Length = 794

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ +Q
Sbjct: 712 KRIALSMRLDEQ 723


>gi|323494582|ref|ZP_08099686.1| transcription accessory protein [Vibrio brasiliensis LMG 20546]
 gi|323311185|gb|EGA64345.1| transcription accessory protein [Vibrio brasiliensis LMG 20546]
          Length = 772

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ++D+ E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD 
Sbjct: 642 VNEVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 701 VKVKVMEVDVKRKRIGLSMRLNDE 724


>gi|259047480|ref|ZP_05737881.1| histidine triad domain-containing protein [Granulicatella adiacens
           ATCC 49175]
 gi|259035671|gb|EEW36926.1| histidine triad domain-containing protein [Granulicatella adiacens
           ATCC 49175]
          Length = 751

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L    V   SDVV  GD  TVWV  LD   +G
Sbjct: 679 EGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVTELDL-KKG 737

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 738 RVGLSM 743


>gi|229087412|ref|ZP_04219546.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
 gi|228695834|gb|EEL48685.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
          Length = 131

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+  
Sbjct: 27  IVKGKVTGIQDYGAFVALDQETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 86

Query: 682 -KIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ IV
Sbjct: 87  RKMSLSLKAAKRKQGRIIV 105


>gi|239623627|ref|ZP_04666658.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521658|gb|EEQ61524.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 665

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 43/193 (22%)

Query: 528 RLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           R  I+ +  ++L   + QL E    R++I       ++NV   G       ++  GA   
Sbjct: 461 RRRIIGDRKQLLVAQKAQLKEELFSRIQIGDAVEGTVKNVTDFGA-----FIDLGGA--- 512

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRS-------ITDV-----------PEVN-------- 620
              DG + I+  S   +E  +++ ++       I D+           PE N        
Sbjct: 513 ---DGLLHISEMSWGRVENPKKVFKAGDQVRVLIKDIQGEKIALSLKFPEANPWVQAAEK 569

Query: 621 ----KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                +  G+V ++ DFGAFV      D L+H+SQ+S E V K SDV++ G+ +  +++D
Sbjct: 570 YAVGNVVVGRVARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLRIGEEIEARVVD 629

Query: 677 FDDRG-KIKLSMK 688
           F++   KI LS+K
Sbjct: 630 FNEADHKISLSIK 642


>gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
          Length = 255

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 41/248 (16%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +      L    GS L   GDT+ I   ++     E     L G  +
Sbjct: 1   MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASV----TESVPPFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R     R+  RA+   +  T     TL +  
Sbjct: 57  GWITAEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+ DA            VPI   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGAFVAVADALIKLYEDGIIQSVPIKDFVAAVSVGIVNGKP----L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQ----------------MDMKIGGISENI-MV 518
            D++ +ED +  +D  V GT  G  + +Q                +D+ + GISE + + 
Sbjct: 173 LDLNFEEDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQ 232

Query: 519 MALQQAKR 526
            AL +A R
Sbjct: 233 RALYEANR 240


>gi|89892399|gb|ABD78984.1| HI0568-like protein [Haemophilus influenzae]
          Length = 770

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622
           G+V Q  AK  ID+   +        E+E                E +  ITD+ +   I
Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R 
Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713

Query: 682 KIKLSMKV 689
           +I L+M++
Sbjct: 714 RIALTMRL 721


>gi|78357054|ref|YP_388503.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219459|gb|ABB38808.1| SSU ribosomal protein S1P [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 482

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           ++ D      + +G+VV+   FGAFV      +GLVHIS++S T R+ K  DVV  GDTV
Sbjct: 279 TVADRLAAGTVVEGKVVRCTPFGAFVEVLPGIEGLVHISEMSWTRRILKAEDVVIPGDTV 338

Query: 671 WVKLLDFDD-RGKIKLSMK 688
            VK+ D D  + +I LS++
Sbjct: 339 SVKIKDIDSAKRRISLSLR 357



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK---I 683
           + ++ +FGAF       +GL+HIS+L   RV    + V +GDT+  K+L  +   K   I
Sbjct: 206 ITRLTNFGAFAELAPGVEGLIHISELGWARVQSADEAVTQGDTLRAKVLKIESTAKGLRI 265

Query: 684 KLSMKVV 690
            LS K V
Sbjct: 266 ALSAKQV 272


>gi|318607824|emb|CBY29322.1| transcription accessory protein (S1 RNA-binding domain) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 794

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ +Q
Sbjct: 712 KRIALSMRLDEQ 723


>gi|304405799|ref|ZP_07387457.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304345042|gb|EFM10878.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 162

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V    D +K  D V VK+++ 
Sbjct: 4   EVGAKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVKDHLKLEDVVKVKVINV 63

Query: 678 DDRGKIKLSMK-VVDQNTGKP 697
           D  GKI LS+K  +D+  G+P
Sbjct: 64  DKDGKIGLSIKQAIDRPEGQP 84


>gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
 gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
          Length = 248

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R I       +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASI----EDRVPPFLKGKGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM-----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 YN LP AT +V ++     G    R +   R+  RA+  V+   A    T+ + 
Sbjct: 57  GWITCEYNMLPRAT-QVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             PI   V+ I++G+V +    + 
Sbjct: 116 CDVIQADGGTRTASISGAFVALVDAVNKLHKRTPFTVYPIRDFVSAISVGIVNN----VR 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED    +D  +  TDSG
Sbjct: 172 MLDLCYLEDSRAQVDMNIVMTDSG 195


>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix
           jacchus]
          Length = 245

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 66  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509
             E+  G   +   +      I  ++MD ++
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205


>gi|289643005|ref|ZP_06475138.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507227|gb|EFD28193.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 850

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK GD V VK+LD D  R
Sbjct: 672 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVSDPREVVKPGDIVRVKVLDVDIAR 731

Query: 681 GKIKLSMKVVDQNT 694
            +I L++++ D N 
Sbjct: 732 KRISLTLRLDDDNN 745


>gi|167622183|ref|YP_001672477.1| RNA-binding S1 domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167352205|gb|ABZ74818.1| RNA binding S1 domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 785

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ +++ I +G V  V +FGAFV     +DGLVHIS ++ + +     VVK 
Sbjct: 640 KEGVEEIKDL-QLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKA 698

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+++ D +R +I LSM++ D+
Sbjct: 699 GDIVKVKVMEVDAERRRIALSMRLDDK 725


>gi|330718559|ref|ZP_08313159.1| transcriptional accessory protein [Leuconostoc fallax KCTC 3537]
          Length = 727

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L+ +RV   S+VV  GD   VW++ +D + R 
Sbjct: 655 QGTVRNVVDFGAFVDLGVKQDGLVHISKLAQKRVTHPSEVVAVGDIVDVWIESVD-EKRH 713

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 714 RIGLSM 719


>gi|322830973|ref|YP_004211000.1| Tex-like protein [Rahnella sp. Y9602]
 gi|321166174|gb|ADW71873.1| Tex-like protein [Rahnella sp. Y9602]
          Length = 776

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ +Q    P
Sbjct: 712 KRIALTMRLDEQPGEAP 728


>gi|266623563|ref|ZP_06116498.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288864643|gb|EFC96941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 367

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGK 682
           G+V ++ DFGAFV      D L+H+SQ+S + V K SDV+  G  +  K++DF  DDR K
Sbjct: 282 GRVARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDR-K 340

Query: 683 IKLSMKVV 690
           I LSMK +
Sbjct: 341 ISLSMKAL 348



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G +  V DFGAF+   GA DGL+HIS++S  RV     V K G+ + V + D +   
Sbjct: 196 VVEGTIKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPKKVFKAGEKMRVLIKDING-D 253

Query: 682 KIKLSMKVVDQNTGK 696
           KI LS+K  + N  K
Sbjct: 254 KIALSLKFPETNPWK 268


>gi|317049904|ref|YP_004117552.1| Tex-like protein [Pantoea sp. At-9b]
 gi|316951521|gb|ADU70996.1| Tex-like protein [Pantoea sp. At-9b]
          Length = 777

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+++ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|171058545|ref|YP_001790894.1| RNA-binding S1 domain-containing protein [Leptothrix cholodnii
           SP-6]
 gi|170775990|gb|ACB34129.1| RNA binding S1 domain protein [Leptothrix cholodnii SP-6]
          Length = 827

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ E   + +G V  V  FGAF+     +DGLVH+SQLS + V    +VVK GD 
Sbjct: 696 VEDIKDLSE-GMVLEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDI 754

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V++L+ D  R +I L+MK+
Sbjct: 755 VKVRVLEVDLARKRISLTMKL 775


>gi|123444176|ref|YP_001008146.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091137|emb|CAL14020.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 794

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ +Q
Sbjct: 712 KRIALSMRLDEQ 723


>gi|15672267|ref|NP_266441.1| hypothetical protein L84502 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723148|gb|AAK04383.1|AE006266_2 hypothetical protein L84502 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405864|gb|ADZ62935.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
           CV56]
          Length = 712

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+      DGL H+S LS   V   SDVV  G   TVWVK LD   RG
Sbjct: 642 EGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDL-QRG 700

Query: 682 KIKLSM 687
           KI L++
Sbjct: 701 KINLTL 706


>gi|313894879|ref|ZP_07828439.1| S1 RNA binding domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976560|gb|EFR42015.1| S1 RNA binding domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 148

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + +FGAF+     + GL+HIS+++   V    D +KE DTV VK+L  DDRGKI LS+K 
Sbjct: 16  ITNFGAFIELPEGKTGLIHISEVADVYVNDVHDFLKERDTVRVKVLTVDDRGKIGLSIKA 75

Query: 690 V 690
           +
Sbjct: 76  L 76


>gi|242371662|ref|ZP_04817236.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242350611|gb|EES42212.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 134

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|228478187|ref|ZP_04062795.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126]
 gi|228249866|gb|EEK09136.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126]
          Length = 400

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD V VK+L  
Sbjct: 192 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAI 250

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 251 DEEAGRVSLSLK 262



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|148825153|ref|YP_001289906.1| transcription elongation factor GreB [Haemophilus influenzae
           PittEE]
 gi|148715313|gb|ABQ97523.1| transcription elongation factor GreB [Haemophilus influenzae
           PittEE]
          Length = 770

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622
           G+V Q  AK  ID+   +        E+E                E +  ITD+ +   I
Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R 
Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713

Query: 682 KIKLSMKV 689
           +I L+M++
Sbjct: 714 RIALTMRL 721


>gi|18311150|ref|NP_563084.1| hypothetical protein CPE2168 [Clostridium perfringens str. 13]
 gi|18145833|dbj|BAB81874.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 720

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|88703318|ref|ZP_01101034.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
 gi|88702032|gb|EAQ99135.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
          Length = 792

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+ + + + +G V  V  FGAFV     +DGLVHIS ++ + V    DV K GD 
Sbjct: 642 VEKITDL-KPDMVLEGTVTNVTSFGAFVDVGVHQDGLVHISAMAEKFVKDPRDVAKAGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVD 691
           V VK++  D +R ++ LSM++ D
Sbjct: 701 VTVKVMSIDVERKRVGLSMRLSD 723


>gi|313607931|gb|EFR84071.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL F2-208]
          Length = 443

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ +
Sbjct: 334 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 393

Query: 679 DRGK-IKLSMK 688
           +  K + LS+K
Sbjct: 394 EADKRLSLSIK 404



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 220 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 277

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 278 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 318


>gi|242241593|ref|ZP_04796038.1| S1 family RNA-binding protein [Staphylococcus epidermidis W23144]
 gi|242234974|gb|EES37285.1| S1 family RNA-binding protein [Staphylococcus epidermidis W23144]
 gi|319399665|gb|EFV87919.1| general stress protein 13 [Staphylococcus epidermidis FRI909]
          Length = 133

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|239997047|ref|ZP_04717571.1| Transcriptional accessory protein [Alteromonas macleodii ATCC
           27126]
          Length = 782

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E + +I D+ +   I +G V  V +FGAFV     +DGLVHIS L+ + ++   +VV
Sbjct: 634 AFKEGVETINDL-KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISALTNKFISDPREVV 692

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           K GD V VK+L+ D  R +I  +M++ D
Sbjct: 693 KAGDIVKVKVLEVDVPRKRISFTMRLDD 720


>gi|226323894|ref|ZP_03799412.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758]
 gi|225207443|gb|EEG89797.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758]
          Length = 253

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 12/109 (11%)

Query: 593 VKIASSSLAE---IEAAREMIRSITDVPEVNK--------IYKGQVVKVMDFGAFVHFCG 641
           V++  ++ AE   I +ARE++R      +  K        + KG V  +  +GAFV    
Sbjct: 85  VRVIEANQAEGRLILSAREILREQKKAEDAKKLASVQVGSVVKGTVESLQSYGAFVRLEN 144

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              GLVHISQ+ST+R+     V+  GD V VK++   D GKI LS+K +
Sbjct: 145 GLSGLVHISQISTQRIKSADQVLHVGDEVDVKVIGIKD-GKISLSIKAL 192


>gi|225568091|ref|ZP_03777116.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM
           15053]
 gi|225163044|gb|EEG75663.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM
           15053]
          Length = 376

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D ++   KI
Sbjct: 282 GRVARMTDFGAFVELAPGVDALLHVSQISRAHVDKPSDVLSVGQEITAKIVDLNEAEKKI 341

Query: 684 KLSMKVVDQNT 694
            LSMK ++ +T
Sbjct: 342 SLSMKALEPDT 352



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  E  +E+   +    ++    +G V  V DFGAF+   G  DGL+HIS++S  RV   
Sbjct: 179 ARAEKQKELFEKL----QIGDTVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENP 233

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             V + GD V V + D +D  KI LS+K  + N
Sbjct: 234 KKVFQVGDIVKVLIKDINDT-KIALSLKFPETN 265


>gi|172058299|ref|YP_001814759.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990820|gb|ACB61742.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 130

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E +++  G+V  + +FGAFV       GLVHIS++S + V   +D VK GD V VK+LD 
Sbjct: 5   EKDQVVTGKVTGIQNFGAFVALDEQTQGLVHISEISHDYVKDINDYVKVGDEVTVKVLDI 64

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   K+KLS+K   +
Sbjct: 65  DEANKKMKLSIKATQE 80


>gi|125623169|ref|YP_001031652.1| transcription accessory protein TEX [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491977|emb|CAL96904.1| transcription accessory protein TEX [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069916|gb|ADJ59316.1| transcription accessory protein TEX [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 713

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+      DGL H+S LS   V   SDVV  G   TVWVK LD   RG
Sbjct: 642 EGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDL-QRG 700

Query: 682 KIKLSM 687
           KI L++
Sbjct: 701 KINLTL 706


>gi|46446608|ref|YP_007973.1| hypothetical protein pc0974 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400249|emb|CAF23698.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 754

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 5/95 (5%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE I SI D+ P ++   +G V  V  FGAF+     +DGL+H+S+LS   V+  +DVVK
Sbjct: 635 REDILSIQDLKPGLH--LEGIVTNVTAFGAFIDIGVHQDGLIHLSELSDHYVSHPNDVVK 692

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV-VDQNTGKPI 698
            GD + V++L  D +R +I L+ +V  +++T +PI
Sbjct: 693 AGDKLKVEVLTIDVERKRISLTARVGQNRSTKEPI 727


>gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
 gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
          Length = 408

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D +    I S  +A  E    +   + +     +I  G+V  + DFGAFV+  GA D
Sbjct: 191 IEVDRERRRLILSERVATPETRETLKERVIETLAEGEIRTGRVTSLADFGAFVNISGA-D 249

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +R+   S+V++ G  V VK++  D ++ +I LS++   Q  G P
Sbjct: 250 GLVHLSEISWDRIKHPSEVLQVGQEVKVKVISVDREKRRIGLSIR---QTQGDP 300



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G + ++  FGAF       +GL+HIS++S +R+    +V+KEGD V ++++  
Sbjct: 309 QVGMLVEGVITRLTKFGAFAKLDEDIEGLIHISEISEKRIEHPKEVLKEGDKVTLRIVKI 368

Query: 678 D-DRGKIKLSMKVVD 691
           D +  +I LS++ VD
Sbjct: 369 DPENHRIGLSLRRVD 383


>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 401

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FG+FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 196 VGDVVEGRVSRLTNFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 255 NDRHRISLSIK 265



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  + +FGAFV       GLVH+S++S + V K SDV+  G  V VK+L+ D  +
Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSK 343

Query: 681 GKIKLSMKVVD 691
            +I LS+K  D
Sbjct: 344 RRISLSIKQAD 354


>gi|257869273|ref|ZP_05648926.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
 gi|257803437|gb|EEV32259.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
          Length = 727

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVH+S+LS   V    DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHLSKLSRNFVKHPKDVVAVGDIVTVWIEQVD-TTKGR 715

Query: 683 IKLSMKVVDQNTGK 696
           I L+M  VD   GK
Sbjct: 716 ISLTM--VDPTHGK 727


>gi|283787959|ref|YP_003367824.1| transcription accessory protein [Citrobacter rodentium ICC168]
 gi|282951413|emb|CBG91112.1| putative transcription accessory protein [Citrobacter rodentium
           ICC168]
          Length = 772

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 401

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FG+FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 196 VGDVVEGRVSRLTNFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 255 NDRHRISLSIK 265



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  + +FGAFV       GLVH+S++S + V K SDV+  G  V VK+L+ D  +
Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSK 343

Query: 681 GKIKLSMKVVD 691
            +I LS+K  D
Sbjct: 344 RRISLSIKQAD 354


>gi|239828183|ref|YP_002950807.1| general stress protein 13 [Geobacillus sp. WCH70]
 gi|239808476|gb|ACS25541.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 121

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I KG+V  +  +G FV       GLVHIS++S E V    D V  GD + VK+L  
Sbjct: 5   EVGSIVKGKVTGIQPYGVFVELDEETQGLVHISEISHEFVKNIKDYVNVGDEIIVKVLSI 64

Query: 678 DDRGK-IKLSMKVVDQNTGK 696
           D + K + LSM+ V++  GK
Sbjct: 65  DPQTKRVSLSMRAVEERQGK 84


>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 401

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V ++ +FG+FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D
Sbjct: 196 VGDVVEGRVSRLTNFGSFVDIGGV-DGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGID 254

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 255 NDRHRISLSIK 265



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  + +FGAFV       GLVH+S+++ + V K SDV+  G  V VK+L+ D  +
Sbjct: 284 VIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSK 343

Query: 681 GKIKLSMKVVD 691
            +I LS+K VD
Sbjct: 344 RRISLSIKQVD 354


>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
 gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta]
 gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes]
 gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus
           leucogenys]
 gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41; AltName: Full=p12A
 gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
 gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
 gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
 gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
 gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
 gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
          Length = 245

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 66  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509
             E+  G   +   +      I  ++MD ++
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205


>gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 248

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R I      L    GS L   G+T+ I   ++    + +    + G  R
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASV----ENKVPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +DA VP +K PV    A  ++G++++G   + L
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDLLAATSVGVLEEGGTVLDL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           + I   ED    +D  +  T SG
Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196


>gi|157963826|ref|YP_001503860.1| RNA-binding S1 domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157848826|gb|ABV89325.1| RNA binding S1 domain protein [Shewanella pealeana ATCC 700345]
          Length = 803

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ +++ I +G V  V +FGAFV     +DGLVHIS ++ + +     VVK 
Sbjct: 661 KEGVEEIKDL-KLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKA 719

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V VK+++ D +R +I LSM++ D+    P
Sbjct: 720 GDIVKVKVMEVDAERRRIGLSMRLDDKAGDAP 751


>gi|332703922|ref|ZP_08424010.1| RNA binding S1 domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554071|gb|EGJ51115.1| RNA binding S1 domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 489

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G +KI S SL + EA  +   ++ D  +     +G+V+++ DFGAFV      +GLVH+
Sbjct: 264 EGRLKI-SLSLKQTEA--DPWTTLGDRFQAGDTVQGKVIRLADFGAFVEIAPGIEGLVHV 320

Query: 650 SQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S++S T R++K SDVV  G  + VK+ D D    +I LS++
Sbjct: 321 SEMSYTRRISKPSDVVNPGQEISVKIKDVDLANRRISLSLR 361



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---- 677
           I +G V K+M +GAFV      +G+ HIS+LS  RV   S  V+ G  V  K+L      
Sbjct: 203 IIEGTVSKLMPYGAFVELMPGLEGMAHISELSWSRVDDPSAAVQPGQRVKAKVLAVEPGK 262

Query: 678 -DDRGKIKLSMK 688
            + R KI LS+K
Sbjct: 263 KEGRLKISLSLK 274


>gi|254555611|ref|YP_003062028.1| hypothetical protein JDM1_0442 [Lactobacillus plantarum JDM1]
 gi|300768961|ref|ZP_07078852.1| S1 RNA binding domain protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308179641|ref|YP_003923769.1| hypothetical protein LPST_C0452 [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|254044538|gb|ACT61331.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
 gi|300493482|gb|EFK28659.1| S1 RNA binding domain protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045132|gb|ADN97675.1| hypothetical protein LPST_C0452 [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 179

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV+    + GLVHIS++S   V    DV+  GD V VK+L  
Sbjct: 4   EVGTKVTGKVSGITNFGAFVNLGNNQTGLVHISEVSDGFVKDIHDVLSVGDDVTVKVLSV 63

Query: 678 DDRGKIKLSM-KVVDQNTGK 696
            D GKI LS+ K VD+  G+
Sbjct: 64  GDDGKIGLSIRKAVDKPQGE 83


>gi|28377428|ref|NP_784320.1| hypothetical protein lp_0543 [Lactobacillus plantarum WCFS1]
 gi|28270260|emb|CAD63161.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 179

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV+    + GLVHIS++S   V    DV+  GD V VK+L  
Sbjct: 4   EVGTKVTGKVSGITNFGAFVNLGNNQTGLVHISEVSDGFVKDIHDVLSVGDDVTVKVLSV 63

Query: 678 DDRGKIKLSM-KVVDQNTGK 696
            D GKI LS+ K VD+  G+
Sbjct: 64  GDDGKIGLSIRKAVDKPQGE 83


>gi|239815851|ref|YP_002944761.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
 gi|239802428|gb|ACS19495.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
          Length = 791

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAF+     +DGLVH+SQLS + V    +VVK GD V VK+++ D  R
Sbjct: 673 ILEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDVAR 732

Query: 681 GKIKLSMKV 689
            +I LSMK+
Sbjct: 733 KRIGLSMKL 741


>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV  GD V V++L+ D D
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLEVDLD 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ V VK++D D
Sbjct: 291 VGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 245

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 66  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DSTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509
             E+  G   +   +      I  ++MD ++
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205


>gi|222151971|ref|YP_002561131.1| S1 RNA binding domain protein [Macrococcus caseolyticus JCSC5402]
 gi|222121100|dbj|BAH18435.1| S1 RNA binding domain protein [Macrococcus caseolyticus JCSC5402]
          Length = 726

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS   V   +DVV  GD V V + D   D+GK+
Sbjct: 657 GTVRNVVDFGAFVDIGVKQDGLVHISKLSDRFVKHPTDVVSVGDIVEVWIEDIMHDKGKV 716

Query: 684 KLSMKVVD 691
            L+M  VD
Sbjct: 717 ALTMINVD 724


>gi|84386346|ref|ZP_00989374.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
 gi|84378770|gb|EAP95625.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
          Length = 776

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + S++D+ E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G+ 
Sbjct: 642 VNSMSDL-EPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPHEVVKTGEI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 701 VKVKVMEVDVQRKRIALSMRMKDE 724


>gi|56807869|ref|ZP_00365704.1| COG2183: Transcriptional accessory protein [Streptococcus pyogenes
           M49 591]
          Length = 139

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 52  RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSV 110

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 111 GDLVTVWVSKIDL-DRHKVNLSL 132


>gi|332981388|ref|YP_004462829.1| RNA binding S1 domain-containing protein [Mahella australiensis
           50-1 BON]
 gi|332699066|gb|AEE96007.1| RNA binding S1 domain protein [Mahella australiensis 50-1 BON]
          Length = 130

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I  G V  +  FGAF+       GLVHIS+++   VA   D +KE D V VK+L  
Sbjct: 4   QVGNIVDGTVSGITKFGAFIKLPDGSTGLVHISEIADFYVADIKDQLKENDRVRVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQ 692
            D GKI+LS+K   Q
Sbjct: 64  GDDGKIRLSIKKAKQ 78


>gi|315303890|ref|ZP_07874364.1| 30S ribosomal protein S1 [Listeria ivanovii FSL F6-596]
 gi|313627740|gb|EFR96399.1| 30S ribosomal protein S1 [Listeria ivanovii FSL F6-596]
          Length = 381

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S + +    +V+ EG+T+ VK+L+ +
Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGETIEVKVLEVN 331

Query: 679 DRGKIKLSMKVVD 691
           +  K +LS+ + D
Sbjct: 332 ETDK-RLSLSIKD 343



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVENEKASQKQALLNEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   +V++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYQHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256


>gi|281490827|ref|YP_003352807.1| transcription accessory protein (S1 RNA binding domain)
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374585|gb|ADA64105.1| Transcription accessory protein (S1 RNA binding domain)
           [Lactococcus lactis subsp. lactis KF147]
          Length = 712

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+      DGL H+S LS   V   SDVV  G   TVWVK LD   RG
Sbjct: 642 EGVVRNVVDFGAFIDIGIKNDGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDL-QRG 700

Query: 682 KIKLSM 687
           KI L++
Sbjct: 701 KINLTL 706


>gi|145631752|ref|ZP_01787513.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
 gi|144982613|gb|EDJ90159.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
          Length = 770

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 15/128 (11%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622
           G+V Q  AK  ID+   +        E+E                E +  ITD+ +   I
Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R 
Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRK 713

Query: 682 KIKLSMKV 689
           +I L+M++
Sbjct: 714 RIALTMRL 721


>gi|145628950|ref|ZP_01784750.1| predicted transcriptional accessory protein [Haemophilus influenzae
           22.1-21]
 gi|144979420|gb|EDJ89106.1| predicted transcriptional accessory protein [Haemophilus influenzae
           22.1-21]
          Length = 648

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 449 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 503

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 504 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 562

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V VK+L+ D  R +I L+M++
Sbjct: 563 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 599


>gi|27382391|ref|NP_773920.1| hypothetical protein bll7280 [Bradyrhizobium japonicum USDA 110]
 gi|27355562|dbj|BAC52545.1| bll7280 [Bradyrhizobium japonicum USDA 110]
          Length = 786

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVHIS +S   +    +VVK GD V VK+LDF+  R
Sbjct: 661 ILEGTVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREVVKPGDIVKVKVLDFEVAR 720

Query: 681 GKIKLSMKVVDQ 692
            +I L++++ D+
Sbjct: 721 KRISLTLRLDDE 732


>gi|323702560|ref|ZP_08114223.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532534|gb|EGB22410.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574]
          Length = 713

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV      DGLVH S+LS        DVV  GD V V++L  D +R
Sbjct: 644 VLKGTVRNVVDFGAFVDIGLKNDGLVHRSELSDRPFRHPLDVVAVGDIVDVRVLSVDLER 703

Query: 681 GKIKLSMKV 689
           G++ LSMK+
Sbjct: 704 GRVALSMKL 712


>gi|169334397|ref|ZP_02861590.1| hypothetical protein ANASTE_00797 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259114|gb|EDS73080.1| hypothetical protein ANASTE_00797 [Anaerofustis stercorihominis DSM
           17244]
          Length = 666

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+  VK++   L + E  +E I + +    V +  K  +    +FGAF       +GL+H
Sbjct: 535 DNYKVKLSVKDLTK-EPWQEFIENYS----VGQTVKATIKNTTNFGAFAEIIPDVEGLIH 589

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQLS +RV    D VK GD V VK++D + D+ K+ LS+K
Sbjct: 590 ISQLSHDRVNNVEDAVKTGDEVNVKIIDINKDKRKVSLSIK 630



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E+  +     E+ K  +  +  + +FG F+   G  DG +HIS ++ +RV   +D+ K 
Sbjct: 463 KELKEAAIAALEIGKEVEAPIKNITNFGMFIDLNGV-DGFIHISDIAWKRVGNINDLYKV 521

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD+V   + + D D  K+KLS+K
Sbjct: 522 GDSVKAIVTELDKDNYKVKLSVK 544


>gi|168210098|ref|ZP_02635723.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711795|gb|EDT23977.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
          Length = 720

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|110800077|ref|YP_696847.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110674724|gb|ABG83711.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 720

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|322517175|ref|ZP_08070058.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124]
 gi|322124234|gb|EFX95750.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124]
          Length = 430

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD V VK+L  
Sbjct: 222 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAI 280

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 281 DEEAGRVSLSLK 292



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 311 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 370

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 371 ERVSLSIKALEE 382


>gi|168215796|ref|ZP_02641421.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|182382370|gb|EDT79849.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 720

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|154684978|ref|YP_001420139.1| YdcI [Bacillus amyloliquefaciens FZB42]
 gi|154350829|gb|ABS72908.1| YdcI [Bacillus amyloliquefaciens FZB42]
          Length = 719

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV+ +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDV-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|308188423|ref|YP_003932554.1| RNA binding protein [Pantoea vagans C9-1]
 gi|308058933|gb|ADO11105.1| putative RNA binding protein [Pantoea vagans C9-1]
          Length = 775

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|269103902|ref|ZP_06156599.1| transcription accessory protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163800|gb|EEZ42296.1| transcription accessory protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 776

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G +  V +FGAFV     +DGL+HIS LS + V+   +VVK GD V VK+++ D  R
Sbjct: 653 ILEGVITNVTNFGAFVDVGVHQDGLIHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I +SM++ D+
Sbjct: 713 KRIGMSMRLNDE 724


>gi|229846658|ref|ZP_04466766.1| transcription elongation factor GreB [Haemophilus influenzae
           7P49H1]
 gi|229810751|gb|EEP46469.1| transcription elongation factor GreB [Haemophilus influenzae
           7P49H1]
          Length = 770

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNSG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V VK+L+ D  R +I L+M++
Sbjct: 685 DKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRL 721


>gi|238898793|ref|YP_002924475.1| transcriptional accessory protein, RNA binding S1 domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466553|gb|ACQ68327.1| transcriptional accessory protein, RNA binding S1 domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 768

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           EIE  +++I  +        I +G V  +  FGAF+     +DGLVHIS ++ + V    
Sbjct: 634 EIETLKDLIPGM--------ILQGSVTNITHFGAFIDIGVHQDGLVHISSMANQFVTDPH 685

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            ++K GD V VK+L  D +R +I LSM++ +Q
Sbjct: 686 QLIKTGDIVQVKVLSIDMERKRIALSMRLDEQ 717


>gi|52078558|ref|YP_077349.1| hypothetical protein BL00507 [Bacillus licheniformis ATCC 14580]
 gi|52783920|ref|YP_089749.1| hypothetical protein BLi00076 [Bacillus licheniformis ATCC 14580]
 gi|319648587|ref|ZP_08002801.1| hypothetical protein HMPREF1012_03840 [Bacillus sp. BT1B_CT2]
 gi|52001769|gb|AAU21711.1| putative Nucleic acid-binding OB-fold protein,contains S1 domain
           [Bacillus licheniformis ATCC 14580]
 gi|52346422|gb|AAU39056.1| YabR [Bacillus licheniformis ATCC 14580]
 gi|317389354|gb|EFV70167.1| hypothetical protein HMPREF1012_03840 [Bacillus sp. BT1B_CT2]
          Length = 132

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|50546573|ref|XP_500756.1| YALI0B11352p [Yarrowia lipolytica]
 gi|49646622|emb|CAG83003.1| YALI0B11352p [Yarrowia lipolytica]
          Length = 1111

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P +NK+YKG+V  +  FGAFV   G +   DGLVH+S L+  RV   SDVV  GD V+VK
Sbjct: 161 PIINKVYKGRVKNLTSFGAFVTLSGLKNKTDGLVHVSVLAANRVDHPSDVVSVGDVVYVK 220

Query: 674 LLDFDDRGKIKLSMKVVDQNTGK 696
           +   D R KI LS+  VDQ TG+
Sbjct: 221 VCKIDGR-KIGLSLNDVDQQTGQ 242


>gi|260584479|ref|ZP_05852226.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
 gi|260157997|gb|EEW93066.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
          Length = 163

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V  + +FGAFV     + GLVHIS++S   +    DV+  GD V VK+++ 
Sbjct: 4   EVGNILPGKVTGITNFGAFVDLGNRKTGLVHISEVSNSYIKDIKDVLTVGDEVQVKVMEI 63

Query: 678 DDRGKIKLSMK 688
              GK+ LS++
Sbjct: 64  SGDGKVSLSIR 74


>gi|194366186|ref|YP_002028796.1| RNA binding S1 domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194348990|gb|ACF52113.1| RNA binding S1 domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 795

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 7/102 (6%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +AAR  E +  I D+ E   + +G V  V  FGAFV     +DGL+HIS LS   V  
Sbjct: 641 EFKAARFAEGVEDIKDLRE-GMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKD 699

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697
             DVVK GD V VK+L+ D  R +I L+ ++ D   Q T +P
Sbjct: 700 PRDVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741


>gi|190574863|ref|YP_001972708.1| putative transcription accessory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012785|emb|CAQ46414.1| putative transcription accessory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 795

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 7/102 (6%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +AAR  E +  I D+ E   + +G V  V  FGAFV     +DGL+HIS LS   V  
Sbjct: 641 EFKAARFAEGVEDIKDLRE-GMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKD 699

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697
             DVVK GD V VK+L+ D  R +I L+ ++ D   Q T +P
Sbjct: 700 PRDVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741


>gi|304397826|ref|ZP_07379702.1| Tex-like protein [Pantoea sp. aB]
 gi|304354537|gb|EFM18908.1| Tex-like protein [Pantoea sp. aB]
          Length = 775

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|253577005|ref|ZP_04854328.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843615|gb|EES71640.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 743

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G+
Sbjct: 671 QGTVRNVIDFGAFVDIGIKNDGLVHISQLSNGYVKHPMDVVSVGDNVTVWVLNVDVKKGR 730

Query: 683 IKLSMK 688
           + L+M+
Sbjct: 731 VGLTMR 736


>gi|226942660|ref|YP_002797733.1| transcriptional accessory protein [Azotobacter vinelandii DJ]
 gi|226717587|gb|ACO76758.1| transcriptional accessory protein [Azotobacter vinelandii DJ]
          Length = 770

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVRVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 NRVGLSMRMGD 721


>gi|332525945|ref|ZP_08402086.1| putative transcription accessory protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332109496|gb|EGJ10419.1| putative transcription accessory protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 779

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK G TV V++L+ D  R
Sbjct: 659 VLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVNDAREVVKTGQTVKVRVLEVDLAR 718

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 719 KRISLTMKL 727


>gi|260599708|ref|YP_003212279.1| protein YhgF [Cronobacter turicensis z3032]
 gi|260218885|emb|CBA34240.1| Protein yhgF [Cronobacter turicensis z3032]
          Length = 787

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 666 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVLEVDLPR 725

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 726 KRIALTMRLDEQ 737


>gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
          Length = 245

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ AG     PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233

Query: 536 SKVLSESRLQL 546
            +VL +S  +L
Sbjct: 234 KEVLGDSLPEL 244


>gi|332298351|ref|YP_004440273.1| ribosomal protein S1 [Treponema brennaborense DSM 12168]
 gi|332181454|gb|AEE17142.1| ribosomal protein S1 [Treponema brennaborense DSM 12168]
          Length = 572

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVK 673
           D   VN + KG+V K+ DFGAF+      +GL HIS+ S  +++ K SD+VK GD V   
Sbjct: 284 DKYHVNDVVKGRVTKLTDFGAFIELEEGIEGLAHISEFSWVKKINKASDMVKIGDEVECM 343

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L +D   G++ L +K V  N
Sbjct: 344 VLGYDIQAGRVSLGLKQVTNN 364



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           KG V     FGAF+   G  DGL+HI+ +S   V +  D VK+G  + +K++  D   K 
Sbjct: 208 KGAVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQEIELKVIRLDPAEKR 266

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 267 INLSLK 272



 Score = 37.4 bits (85), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++V + DFG FV   G  +GLV+ + LS  R     + VK+   GD V V ++D + +
Sbjct: 467 EGEIVSITDFGLFVRAPGGIEGLVNKANLSDNRDEPYEEAVKKYAVGDKVNVYVVDVNPE 526

Query: 680 RGKIKLSMK 688
           + K+  S+K
Sbjct: 527 KQKVAFSVK 535


>gi|308172343|ref|YP_003919048.1| RNA binding protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605207|emb|CBI41578.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
           [Bacillus amyloliquefaciens DSM 7]
          Length = 719

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV+ +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDV-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|283851123|ref|ZP_06368407.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
 gi|283573519|gb|EFC21495.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
          Length = 507

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V ++ DFGAFV      +GL+H+S++S   R+AK SDVV  G+TV V + D D  + 
Sbjct: 296 EGKVTRLADFGAFVEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDVDLSKR 355

Query: 682 KIKLSMKVV 690
           +I LS+K V
Sbjct: 356 RISLSLKEV 364



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D   + ++   L E E A   +R +  V     +    V +   FGAFV      +GLVH
Sbjct: 173 DGKNIVVSRRKLQEQERAESELRFLESV-NPGDVIPAVVTRFAAFGAFVEVAPGLEGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD----DRGKIKLSMK 688
           +S+LS  R  K  D V  G  V VK+L FD     R +I LS+K
Sbjct: 232 LSELSWSRAEKAEDAVDLGQAVTVKVLSFDRDKKGRPRISLSIK 275


>gi|262195845|ref|YP_003267054.1| Tex-like protein protein-like protein [Haliangium ochraceum DSM
           14365]
 gi|262079192|gb|ACY15161.1| Tex-like protein protein-like protein [Haliangium ochraceum DSM
           14365]
          Length = 801

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           R+ + ++ D+ PE+    +G V  V DFGAFV     +DGLVHISQLS   V    +VVK
Sbjct: 642 RDDVNTLEDLKPEMQ--LEGVVTNVTDFGAFVDVGVHQDGLVHISQLSDRFVKDPREVVK 699

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688
            GD + V++LD D  R +I LS +
Sbjct: 700 VGDKIKVRVLDVDLARKRIALSAR 723


>gi|145637928|ref|ZP_01793570.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
 gi|145268868|gb|EDK08829.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
          Length = 770

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVHQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + V     VVK G+ V +K+L+ D  R +I L+M++
Sbjct: 685 DKFVEDPHQVVKTGNIVKIKVLEVDVPRKRIALTMRL 721


>gi|78221406|ref|YP_383153.1| RNA binding S1 [Geobacter metallireducens GS-15]
 gi|78192661|gb|ABB30428.1| RNA binding S1 [Geobacter metallireducens GS-15]
          Length = 757

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A R+ IR ++D+ E   + +G V  V  FGAFV     +DGLVH+S LST  V   ++ V
Sbjct: 635 AFRDDIRELSDLKE-GMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAV 693

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           + G+ V VK+L  D  R +I LS++   +   +P
Sbjct: 694 RVGEVVKVKVLAVDVPRKRISLSIREAMEGGARP 727


>gi|328552155|gb|AEB22647.1| RNA binding protein containing S1 RNA binding domain,YdcI [Bacillus
           amyloliquefaciens TA208]
 gi|328910428|gb|AEB62024.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
           [Bacillus amyloliquefaciens LL3]
          Length = 719

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV+ +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDV-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|323141764|ref|ZP_08076634.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413753|gb|EFY04602.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 689

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFD 678
           ++Y G+VVKV +FG FV       GLVH ++LS +R  K +DV KEGD  TV VK +D +
Sbjct: 500 EVYTGKVVKVAEFGLFVEIGEGLVGLVHNTELSWDRSVKAADVAKEGDEVTVLVKSIDRE 559

Query: 679 DRGKIKLSMKVVDQNTGK 696
           ++ ++ LS+K   ++  K
Sbjct: 560 NK-RVALSIKATLEDPWK 576



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 10/96 (10%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++EA++  I  I DV         +VV+++ FGA V      +GLVHIS+++ ER+   S
Sbjct: 576 KVEASQFHIGDILDV---------EVVRLLAFGAIVKLSDKVEGLVHISEIAPERIEAPS 626

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           DV++ G  V  +++  D D  KI LS+  V ++  K
Sbjct: 627 DVLEVGQVVKAEIIKMDLDSKKIGLSISKVKRDAEK 662


>gi|322382482|ref|ZP_08056370.1| RNA helicase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153544|gb|EFX45940.1| RNA helicase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 762

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQ+S + V    DVV  GD V V +L+ D  +G+
Sbjct: 691 QGTVRNVIDFGAFVDIGIKSDGLVHISQMSDKFVKHPMDVVSVGDNVTVWVLNVDIKKGR 750

Query: 683 IKLSMK 688
           + L+MK
Sbjct: 751 VGLTMK 756


>gi|251809814|ref|ZP_04824287.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875438|ref|ZP_06284310.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|251806682|gb|EES59339.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295795|gb|EFA88317.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
          Length = 133

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG++  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|315640774|ref|ZP_07895876.1| YhgF like protein [Enterococcus italicus DSM 15952]
 gi|315483529|gb|EFU74023.1| YhgF like protein [Enterococcus italicus DSM 15952]
          Length = 725

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + +ITD+    ++ KG V  V+DFGAFV      DGLVH+S+LS + V K S++V  
Sbjct: 636 RKDVLTITDLSAGMEL-KGTVRNVVDFGAFVDIGVKHDGLVHVSKLSEKFVKKASEIVAV 694

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  +VWV+ +D   R ++ L+M
Sbjct: 695 GDIVSVWVEQVDL-ARERVSLTM 716


>gi|156936431|ref|YP_001440347.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534685|gb|ABU79511.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894]
          Length = 775

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVLEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|146280673|ref|YP_001170826.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri
           A1501]
 gi|145568878|gb|ABP77984.1| S1 RNA binding domain protein [Pseudomonas stutzeri A1501]
          Length = 772

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ++D+ E   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD 
Sbjct: 640 VEKLSDL-EPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDI 698

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+++ D  R ++ LSM++ D    K
Sbjct: 699 VKVKVMEVDIPRNRVGLSMRMSDTPGAK 726


>gi|71908357|ref|YP_285944.1| RNA binding S1 [Dechloromonas aromatica RCB]
 gi|71847978|gb|AAZ47474.1| RNA binding S1 [Dechloromonas aromatica RCB]
          Length = 772

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVH+S LS   V    DVVK G  V VK+L+ D  R
Sbjct: 657 ILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSNTFVKDPHDVVKAGQVVKVKVLEVDLQR 716

Query: 681 GKIKLSMKVVDQNT 694
            +I L+M++ D+ T
Sbjct: 717 QRIALTMRMGDEPT 730


>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus
           scrofa]
          Length = 245

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 62

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               S +   R      Y+    +TGE  R     R+    G   R+A    +       
Sbjct: 63  ----SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG    A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 174

Query: 481 GDEDHLG--HMDFKVAGTDSGITAMQMDMKI 509
             E+  G   +   +      I  ++MD ++
Sbjct: 175 HVEEAAGGPQLALALLPASGQIALLEMDARL 205


>gi|254559495|ref|YP_003066590.1| transcriptional accessory protein [Methylobacterium extorquens DM4]
 gi|254266773|emb|CAX22572.1| transcriptional accessory protein [Methylobacterium extorquens DM4]
          Length = 771

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R +
Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSVDVPRKR 714

Query: 683 IKLSMKV 689
           I LSM++
Sbjct: 715 IALSMRL 721


>gi|328957351|ref|YP_004374737.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
 gi|328673675|gb|AEB29721.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
          Length = 406

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG++ ++ +FGAF+   G  DGLVHISQ++ E V   +DV+  G+ V VK+L  + + 
Sbjct: 208 IVKGKIARLTNFGAFIDLGGV-DGLVHISQIAYEHVKDPADVLTVGEEVNVKILSVNEEE 266

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 267 GRISLSIK 274



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S   +A   +V+ EGD + VK+L+ +
Sbjct: 290 VGSVLDGLVKRLTSFGAFVEVFPGVEGLVHISQISHNHIATPHEVLNEGDEIKVKVLEVN 349

Query: 679 DRG-KIKLSMKVVDQNTGKP 697
               ++ LS+K +++   +P
Sbjct: 350 PTDQRLSLSIKALEEKPNQP 369


>gi|327395567|dbj|BAK12989.1| protein YhgF [Pantoea ananatis AJ13355]
          Length = 774

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+++ D  R
Sbjct: 652 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|307332556|ref|ZP_07611607.1| Tex-like protein-like protein [Streptomyces violaceusniger Tu 4113]
 gi|306881791|gb|EFN12926.1| Tex-like protein-like protein [Streptomyces violaceusniger Tu 4113]
          Length = 773

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+     I +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 639 KEGVEKIGDL-SAGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKP 697

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 698 GDIVRVKVLDIDIPRKRISLTLRLDDE 724


>gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
 gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
          Length = 409

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 8/98 (8%)

Query: 603 IEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +EAAR+  RS  +T +    K+ KG V  +++FGAFV   G  DGL+HIS+LS   V   
Sbjct: 201 LEAARKAERSEILTKLKPGMKL-KGTVSSIVEFGAFVDLGGI-DGLIHISELSWNHVNHP 258

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           ++VVK G  V V++LD D +R +I L +K   Q T  P
Sbjct: 259 AEVVKVGQEVEVQVLDIDLNRERISLGLK---QTTEDP 293



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G V K++ FGAFV      +GLVHIS+++   V   + V K GD V VK+++ D
Sbjct: 303 IGAIVEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKAHVDAPAQVCKVGDVVQVKVMEID 362

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +R +I LS+K   +  G
Sbjct: 363 LERRRISLSIKAAAETLG 380


>gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064]
 gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
 gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
          Length = 248

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|253576395|ref|ZP_04853725.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844288|gb|EES72306.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 411

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V ++++FGAFV      +GLVHISQ+S + +    +V+KEG TV VK+LD +   
Sbjct: 289 IVTGEVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPHEVLKEGQTVQVKVLDVNPSE 348

Query: 682 K-IKLSMK 688
           K + LS+K
Sbjct: 349 KRVSLSIK 356



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V ++  FGAFV   G  DGLVH+S+++   V K +DV+ EGD V VK+L  D +
Sbjct: 203 QVLEGTVQRLTQFGAFVDVGGV-DGLVHVSEIAWNHVDKPADVLSEGDKVKVKVLKVDPE 261

Query: 680 RGKIKLSMK 688
           +GKI LS+K
Sbjct: 262 KGKISLSIK 270



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG +VK+ D  A+V      DG++ I +LS+  +   +D V+ G  V  K++  DD + +
Sbjct: 33  KGTIVKIEDNQAYVSIGYKYDGVIPIRELSSVHLDNAADAVQVGQEVETKVVSIDDEKER 92

Query: 683 IKLSMKVVD 691
           + LS + +D
Sbjct: 93  LVLSKRAID 101


>gi|251792146|ref|YP_003006866.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700]
 gi|247533533|gb|ACS96779.1| ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700]
          Length = 548

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E++++    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVVESESSQDREEVLANLSEGAEV-KGTVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD + VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347


>gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e]
 gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561]
 gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459]
 gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e]
 gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99]
 gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208]
 gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220]
 gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A]
          Length = 248

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|255723463|ref|XP_002546665.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           tropicalis MYA-3404]
 gi|240130796|gb|EER30359.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           tropicalis MYA-3404]
          Length = 1027

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAK 659
           E    + +I S    P+V  +  G V  +  +GAF+   G   GL HISQ+S +  ++A 
Sbjct: 84  ETTNKKTIILSPEKPPQVGDVLPGIVEGIQAYGAFIKL-GNTSGLCHISQISFDGSKIAS 142

Query: 660 TSDVVKEGDTVWVKLLDFDDRG---KIKLSMKVVDQNTGK 696
            SD +K    V+VK+ D  ++G   KI LSM+ +DQ TG+
Sbjct: 143 VSDYLKPRQAVYVKITDIQNQGSRKKISLSMRGIDQVTGE 182


>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
 gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
          Length = 245

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 23/244 (9%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E       
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE------- 57

Query: 366 LSGTQ------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           + G++      R      Y+    +TGE  R     R+    G   R+     +      
Sbjct: 58  IRGSRARALPDRPLVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHP 117

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+
Sbjct: 118 RSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADL 173

Query: 480 SGDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           S  E+  G     +A       I  ++MD +   + E+ +   L+ A R    +   + +
Sbjct: 174 SHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDR 230

Query: 538 VLSE 541
           V+ +
Sbjct: 231 VVRQ 234


>gi|297156040|gb|ADI05752.1| transcription accessory protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 796

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+     I +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 641 KEGVEKIGDL-AAGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKP 699

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 700 GDIVRVKVLDVDIPRKRISLTLRLDDE 726


>gi|195978466|ref|YP_002123710.1| S1 RNA-binding domain transcription accessory protein
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975171|gb|ACG62697.1| S1 RNA-binding domain transcription accessory protein
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 710

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I S+ D+  V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RKDILSVKDLA-VGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKVDL-DRHKVNLSL 703


>gi|156407958|ref|XP_001641624.1| predicted protein [Nematostella vectensis]
 gi|156228763|gb|EDO49561.1| predicted protein [Nematostella vectensis]
          Length = 392

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 631 MDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           M FG FV   G +   +GLVHISQL  E RVA  SDVV  G  V VK+L      +I LS
Sbjct: 1   MQFGCFVQLEGLKGRHEGLVHISQLRREGRVANVSDVVHRGQRVRVKVLSMAG-NRISLS 59

Query: 687 MKVVDQNTGK 696
           MK VDQ+TG+
Sbjct: 60  MKDVDQDTGE 69


>gi|259046867|ref|ZP_05737268.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175]
 gi|259036490|gb|EEW37745.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175]
          Length = 397

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ +FGAF+   G  DGLVHISQ+S E VAK SD ++ G  V  K++  D + 
Sbjct: 198 VVTGKVARLTNFGAFIDLGGV-DGLVHISQISHEHVAKASDKLEVGQEVQAKVISVDPES 256

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 257 GRVSLSIK 264



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ++ + +A   +V+KEG  V VK+L+  
Sbjct: 280 VGSVLDGLVKRLTTFGAFVELFPGVEGLVHISQIAHQHIATPHEVLKEGQEVQVKVLEVH 339

Query: 679 -DRGKIKLSMKVVDQ 692
            ++ +I LS+K + +
Sbjct: 340 PEQQRISLSIKALQE 354


>gi|238754100|ref|ZP_04615458.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
 gi|238707596|gb|EEP99955.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
          Length = 782

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + ++ D+  V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK G
Sbjct: 639 EGVETMNDL-TVGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I L+M++ +Q
Sbjct: 698 DIVKVKVMEVDLQRKRIALTMRLDEQ 723


>gi|225868211|ref|YP_002744159.1| transcription accessory protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701487|emb|CAW98645.1| putative transcription accessory protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 710

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I S+ D+  V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RKDILSVKDLA-VGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKVDL-DRHKVNLSL 703


>gi|225870852|ref|YP_002746799.1| transcription accessory protein [Streptococcus equi subsp. equi
           4047]
 gi|225700256|emb|CAW94488.1| putative transcription accessory protein [Streptococcus equi subsp.
           equi 4047]
          Length = 710

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I S+ D+  V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  
Sbjct: 623 RKDILSVKDLA-VGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKVDL-DRHKVNLSL 703


>gi|161505930|ref|YP_001573042.1| hypothetical protein SARI_04111 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867277|gb|ABX23900.1| hypothetical protein SARI_04111 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 776

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLANKFVDDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 249

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 10  LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARA 69

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 70  LPDRALVNCQ-------YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPR 122

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 123 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 178

Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKI 509
             E+  G     +A       I  ++MD ++
Sbjct: 179 HVEEAAGGPQLALALLPASGQIALLEMDARL 209


>gi|110803195|ref|YP_699443.1| transcription accessory protein [Clostridium perfringens SM101]
 gi|110683696|gb|ABG87066.1| RNA-binding protein [Clostridium perfringens SM101]
          Length = 720

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V++LD D  R
Sbjct: 650 ILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDIVEVRILDVDLKR 709

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 710 KRISLSMK 717


>gi|73663557|ref|YP_302338.1| hypothetical protein SSP2248 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496072|dbj|BAE19393.1| putative RNA binding protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 132

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       +P
Sbjct: 64  ADDGKISLSIKKAKDRPRRP 83


>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 253

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R +  +VGL     GS+    G+T+ +  V  G +E +  + S     R
Sbjct: 24  LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAV-YGPKESK--IQSAQLHDR 80

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
               + YN    ++GE        +R +    + +R   PV+  T+ FP + + I  +I 
Sbjct: 81  AVINVEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVV-MTSTFPRSEIDIYVQIL 139

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           + DG +  A +  + LA++DAG+P+S  V   + G 
Sbjct: 140 QLDGGALHAAINATCLAMIDAGIPMSDYVIACSAGF 175


>gi|291544171|emb|CBL17280.1| Transcriptional accessory protein [Ruminococcus sp. 18P13]
          Length = 722

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV      DGLVHISQ+    +    D VK G  V V++LD D  R +I
Sbjct: 651 GTVRNVIDFGAFVDIGVHEDGLVHISQICNRYIKHPLDAVKVGQVVKVRVLDVDVKRKRI 710

Query: 684 KLSMKVVDQN 693
            L+M++ D N
Sbjct: 711 GLTMRLDDTN 720


>gi|260888130|ref|ZP_05899393.1| protein YhgF [Selenomonas sputigena ATCC 35185]
 gi|330840001|ref|YP_004414581.1| Tex-like protein [Selenomonas sputigena ATCC 35185]
 gi|260862159|gb|EEX76659.1| protein YhgF [Selenomonas sputigena ATCC 35185]
 gi|329747765|gb|AEC01122.1| Tex-like protein [Selenomonas sputigena ATCC 35185]
          Length = 727

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  ++D+ +   + +G V  + DFG FV       GL+HIS+LS +RV    DVV  
Sbjct: 638 RQAIVKLSDI-KAGAVMRGTVRNITDFGVFVDIGIKTAGLIHISELSKKRVKHPLDVVSV 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V ++  D +RG+I LS+K V +   
Sbjct: 697 GDIVNVMVIKVDEERGRIGLSLKQVPKEAA 726


>gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
 gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
          Length = 238

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 40/210 (19%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R+I  ++G ++ + GS+L   G T+ I  V +         D L G + 
Sbjct: 1   MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTVNI--------KDGLPGWKS 52

Query: 372 ND----FMMHYNFLPCATGEVSRMGAPSRREIGHG-------RLARRAIHPVLPQTAQFP 420
           +         Y  LP AT         S+RE G G       RL  R +   +       
Sbjct: 53  SGSGGWLTAEYRMLPGAT------HTRSKREAGVGGRSSEIQRLIGRTLRAAVDLDKLGD 106

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPIS----KPVAGIAMGLVKD 469
            T++I  ++  +DG +  A++ G+ LALM+A       GV IS     P++ I++G+VK 
Sbjct: 107 RTIQIDCDVLNADGGTRCASINGAMLALMNALKKMEEQGVDISGIIKTPLSAISVGVVKG 166

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
                 L D+   ED    +D  V  T  G
Sbjct: 167 ----QALLDLCYKEDSAADVDMNVIMTAKG 192


>gi|27469193|ref|NP_765830.1| hypothetical protein SE2275 [Staphylococcus epidermidis ATCC 12228]
 gi|57866061|ref|YP_187742.1| hypothetical protein SERP0146 [Staphylococcus epidermidis RP62A]
 gi|293366150|ref|ZP_06612837.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316742|gb|AAO05917.1|AE016751_212 polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636719|gb|AAW53507.1| general stress protein 13 [Staphylococcus epidermidis RP62A]
 gi|291319744|gb|EFE60103.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737883|gb|EGG74111.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU045]
          Length = 133

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG++  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|319950983|ref|ZP_08024854.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
 gi|319435365|gb|EFV90614.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
          Length = 490

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 209 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 267

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 268 RERVSLSLKATQED 281



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 292 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDID 351

Query: 679 -DRGKIKLSMKVVDQN 693
            DR +I LS+K  D++
Sbjct: 352 LDRRRISLSLKQADED 367


>gi|319775511|ref|YP_004137999.1| transcriptional accessory protein [Haemophilus influenzae F3047]
 gi|317450102|emb|CBY86316.1| predicted transcriptional accessory protein [Haemophilus influenzae
           F3047]
          Length = 770

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G
Sbjct: 640 EGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 698

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
           + V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 699 NIVKVKVLEVDVSRKRIALTMRLDESAVKNDGK 731


>gi|117928296|ref|YP_872847.1| 30S ribosomal protein S1 [Acidothermus cellulolyticus 11B]
 gi|117648759|gb|ABK52861.1| SSU ribosomal protein S1P [Acidothermus cellulolyticus 11B]
          Length = 515

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD ++VK++D D
Sbjct: 302 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELSDRHVEIPEQVVQVGDEIFVKIIDID 361

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 362 LERRRISLSLK 372



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 219 QIRNGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGMPVTVEVLDVDLD 277

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 278 RERVSLSLKSTQED 291


>gi|260913659|ref|ZP_05920135.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
 gi|260632198|gb|EEX50373.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
          Length = 549

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQILENLQEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD + VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   V     G+V  + D+G FV
Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVESKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPN 352


>gi|284028353|ref|YP_003378284.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283807646|gb|ADB29485.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNI------DDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++   G  ++ ++  T A  ++      D+   +   +  LAE+E      R   ++
Sbjct: 578 VRRILDKTGSDLKSLIGNTAALRSVKAADFVDETFGLPTVTDILAELEKPGRDPRPAFKT 637

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    V+KI         +GQV  V  FGAF+     +DGL H+S LS   V    +VV
Sbjct: 638 ATFAEGVDKIADLKPGMRLEGQVTNVAAFGAFIDIGVHQDGLAHVSALSKNYVKDPREVV 697

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K GD V VK+L+ D  R +I L+++ +D   G P
Sbjct: 698 KPGDIVKVKVLEVDIPRQRISLTLR-LDDEIGAP 730


>gi|225019196|ref|ZP_03708388.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum
           DSM 5476]
 gi|224948048|gb|EEG29257.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum
           DSM 5476]
          Length = 663

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ K Y G V  + D+GAFV   G  DG++HI++LS  ++   SD+VK GD V V + D 
Sbjct: 477 EIGKTYTGTVKSLTDYGAFVDL-GGVDGMIHITELSWTKIKHPSDIVKVGDVVEVYVKDI 535

Query: 678 D-DRGKIKLSMKVVDQN 693
           D ++ KI L  +  + N
Sbjct: 536 DQEKKKISLGYRKSEDN 552



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V+++    +V +  FGAF       DGL+HISQ++ + +AK SDV+  G  V  K+ + D
Sbjct: 563 VDQVVNVTIVSLTQFGAFAEIIPGVDGLIHISQIANQHIAKVSDVLSVGQKVDAKITEID 622

Query: 679 -DRGKIKLSMKVV 690
            D+ +I LSM+ +
Sbjct: 623 VDKKRISLSMRAL 635


>gi|331269557|ref|YP_004396049.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1-like protein [Clostridium botulinum
           BKT015925]
 gi|329126107|gb|AEB76052.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1-like protein [Clostridium botulinum
           BKT015925]
          Length = 634

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 9/88 (10%)

Query: 610 IRSITDVPEVN--------KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           I+ +T+ P  N         I  G+VV+  DFGAFV      DGLVH+S++S +R+ K S
Sbjct: 544 IKKLTEDPWTNIEEKYPIGSIVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPS 603

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           DV+K  + V  K+L  +  GK + LS+K
Sbjct: 604 DVLKVDEEVKAKILSVNKDGKRLSLSIK 631


>gi|116493276|ref|YP_805011.1| RNA-binding protein [Pediococcus pentosaceus ATCC 25745]
 gi|116103426|gb|ABJ68569.1| RNA binding protein (S1 domain) [Pediococcus pentosaceus ATCC
           25745]
          Length = 168

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     R GLVHIS++S   +    DV+  GDTV VK+L  
Sbjct: 4   EVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKVLSI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD 
Sbjct: 64  ADDGKIALSIRKAVDH 79


>gi|282856368|ref|ZP_06265647.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
 gi|282585739|gb|EFB91028.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
          Length = 518

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
           +VV++ DFGAFV      +GL+HISQLST RV K  DV++EG  V  ++L+ +    +I+
Sbjct: 385 KVVRLADFGAFVEIEKGVEGLIHISQLSTHRVEKPGDVLQEGQEVTARVLEVNPAERRIR 444

Query: 685 LSMKVVD 691
           LS+  ++
Sbjct: 445 LSISAIE 451



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 8/97 (8%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++ A RE   S  +V +V     G V  V  FG FV+  G  DGLVH+S++S +R +K+ 
Sbjct: 194 DLSAKREKFYSEVNVGDV---LDGTVSSVTTFGLFVN-VGPLDGLVHVSEVSWQRSSKSR 249

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           +  K+GD V VK++  D +  KI LS++   Q  G P
Sbjct: 250 ETYKKGDAVKVKVIGIDKENNKISLSIR---QAQGNP 283



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG V  V DFGAFV      +GL+HI  LS  R+    +V+ +G  V   +L+ D   K
Sbjct: 298 KGVVTNVTDFGAFVEVEPGIEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKK 356


>gi|256848385|ref|ZP_05553828.1| RNA-binding S1 domain-containing protein [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714983|gb|EEU29961.1| RNA-binding S1 domain-containing protein [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 167

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G+V  + +FGAF+     + GLVHISQ+S   V    DV+  GD V VK++   D GKI 
Sbjct: 11  GKVSGITNFGAFIDLADHQTGLVHISQVSNHYVKDIHDVLSVGDEVTVKVIKVADDGKIA 70

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 71  LSIKAAEE 78


>gi|238927087|ref|ZP_04658847.1| S1 domain RNA-binding protein [Selenomonas flueggei ATCC 43531]
 gi|238885067|gb|EEQ48705.1| S1 domain RNA-binding protein [Selenomonas flueggei ATCC 43531]
          Length = 729

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  ++D+  V  I +G V  + DFGAF+     + GL+HIS++S  RV    DV+  
Sbjct: 639 RQNIVKLSDLA-VGTIMRGTVRNITDFGAFIDIGLKQAGLLHISEMSCHRVRHPLDVLSV 697

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
           GDT+ V ++  D+ RG+I LS+K
Sbjct: 698 GDTLDVMIISIDEARGRIGLSVK 720


>gi|89076064|ref|ZP_01162424.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34]
 gi|89048216|gb|EAR53798.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34]
          Length = 772

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G +  V +FGAFV     +DGLVHIS LS + ++   +VVK GD V VK+++ D  R
Sbjct: 653 VLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I +SM++ D+
Sbjct: 713 KRIGMSMRLSDE 724


>gi|332143380|ref|YP_004429118.1| Transcriptional accessory protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553402|gb|AEB00121.1| Transcriptional accessory protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 788

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E + +I D+ +   I +G V  V +FGAFV     +DGLVHIS L+ + ++   +VV
Sbjct: 634 AFKEGVETINDL-KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISALTNKFISDPREVV 692

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           K GD V VK+L+ D  R +I  +M++ D
Sbjct: 693 KAGDIVKVKVLEVDVARKRISFTMRLDD 720


>gi|116627481|ref|YP_820100.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMD-9]
 gi|116100758|gb|ABJ65904.1| SSU ribosomal protein S1P [Streptococcus thermophilus LMD-9]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 6/87 (6%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +EA +E+   +    EV  +  G+V ++  FGAF+   G  DGLVH+++LS ER      
Sbjct: 181 MEARKEVFSKL----EVGSVVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKS 235

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMK 688
           VV  GD + VK+L  D+  G++ LS+K
Sbjct: 236 VVSVGDEIEVKVLAIDEEAGRVSLSLK 262



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFG FV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 281 VIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|327474468|gb|EGF19874.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK408]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|329122447|ref|ZP_08251034.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
 gi|327473729|gb|EGF19148.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
          Length = 773

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G
Sbjct: 643 EGVEEITDL-KPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTG 701

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD---QNTGK 696
           + V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 702 NIVKVKVLEVDVSRKRIALTMRLDESAVKNDGK 734


>gi|294055034|ref|YP_003548692.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
 gi|293614367|gb|ADE54522.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
          Length = 552

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  + KG+V K+  +GAFV      DGLVHISQ+S ERV K  DV+  G  V  +++  
Sbjct: 444 KIGDMVKGKVSKITSYGAFVELDNDIDGLVHISQISEERVEKIKDVLDSGAEVTARVIKI 503

Query: 678 D-DRGKIKLSMKVVD 691
           D D  +I LS+K  +
Sbjct: 504 DKDERRIGLSIKAAN 518



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  +  +GAFV      DG+VH+S +S T +V   S+VVK+GD V   +LD D D  
Sbjct: 363 RGKVRNLTTYGAFVELEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADSQ 422

Query: 682 KIKLSMK 688
           +I L MK
Sbjct: 423 RISLGMK 429



 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 15/153 (9%)

Query: 549 FTPRVEIMAIPPDQIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           F P  +I   PP  +   +G     KV+         K+N++    V ++   L E E  
Sbjct: 125 FLPASQIDIQPPKNLDQYVGQTYDFKVV---------KINLERKNIV-VSRRELIE-EQR 173

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E  R++ +  +     +GQV  + D+GAFV   G  DGL+HI+ +S  R+   S++VK+
Sbjct: 174 MEKRRALLEEVKPGDKRRGQVKNITDYGAFVDLDGL-DGLLHITDMSWGRIQHPSEMVKQ 232

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G+ + V +++ D DR ++ L +K +  N  + I
Sbjct: 233 GEEIEVVIIEIDRDRERVSLGLKQLADNPWERI 265



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV ++ +GAFV      +GLVH+++LS T+R++K  +V++ G+ +   +L    +  K
Sbjct: 277 GKVVNLVPYGAFVEIEEGVEGLVHVTELSWTKRISKPGEVLRIGEEIQAVVLGIQKEEQK 336

Query: 683 IKLSMKVVDQN 693
           I L ++ +D N
Sbjct: 337 ISLGVRQLDAN 347


>gi|325687504|gb|EGD29525.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK72]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|324991109|gb|EGC23043.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK353]
 gi|324992856|gb|EGC24776.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK405]
 gi|324994504|gb|EGC26417.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK678]
 gi|325689660|gb|EGD31664.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK115]
 gi|325696551|gb|EGD38441.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK160]
 gi|327462163|gb|EGF08490.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1]
 gi|327469991|gb|EGF15455.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK330]
 gi|327489845|gb|EGF21635.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1058]
 gi|328946259|gb|EGG40403.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1087]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|322372522|ref|ZP_08047058.1| ribosomal protein S1 [Streptococcus sp. C150]
 gi|321277564|gb|EFX54633.1| ribosomal protein S1 [Streptococcus sp. C150]
          Length = 417

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ + D 
Sbjct: 298 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADA 357

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 358 ERVSLSIKALEE 369



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD V VK+L  
Sbjct: 209 EVGSIVTGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVDVKVLAI 267

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 268 DEEAGRVSLSLK 279


>gi|302875853|ref|YP_003844486.1| Tex-like protein-like [Clostridium cellulovorans 743B]
 gi|307689286|ref|ZP_07631732.1| Tex-like protein-like [Clostridium cellulovorans 743B]
 gi|302578710|gb|ADL52722.1| Tex-like protein-like [Clostridium cellulovorans 743B]
          Length = 719

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + KG V  V DFGAFV     +DGLVH S++    V    DVVK GD + VK+L+ D+ R
Sbjct: 649 VLKGTVRNVADFGAFVDIGVHQDGLVHKSEMRNSFVKHPLDVVKVGDIIDVKILEVDEKR 708

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 709 RRIALSMK 716


>gi|91791611|ref|YP_561262.1| RNA binding S1 [Shewanella denitrificans OS217]
 gi|91713613|gb|ABE53539.1| RNA binding S1 [Shewanella denitrificans OS217]
          Length = 799

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  + D+ PE+  I +G V  V +FGAFV     +DGLVHIS L+ + V+    +VK
Sbjct: 644 KEGVEELKDLKPEM--ILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTIVK 701

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            GD V VK+++ D +R +I LSM++
Sbjct: 702 AGDVVKVKVMEVDIERRRIGLSMRL 726


>gi|323351529|ref|ZP_08087183.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66]
 gi|322122015|gb|EFX93741.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 489

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 212 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFD 270

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 271 RERVSLSLKATQED 284



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FG FV      +GLVH+S+L+T  V     V K GD ++VK++D 
Sbjct: 294 KIGQIVPGKVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDI 353

Query: 678 D-DRGKIKLSMK 688
           D +R +I LS+K
Sbjct: 354 DLERRRISLSLK 365


>gi|260774748|ref|ZP_05883651.1| transcription accessory protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609310|gb|EEX35462.1| transcription accessory protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 775

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ++D+ E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD 
Sbjct: 642 VNEVSDL-EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+++ D  R +I LSM++ D+
Sbjct: 701 VKVKVMEVDIQRKRIGLSMRLNDE 724


>gi|327478939|gb|AEA82249.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri DSM
           4166]
          Length = 772

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ++D+ E   + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD 
Sbjct: 640 VEKLSDL-EPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDI 698

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V VK+++ D  R ++ LSM++ D    K
Sbjct: 699 VMVKVMEVDIPRQRVGLSMRMSDTPGAK 726


>gi|154502539|ref|ZP_02039599.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149]
 gi|153796935|gb|EDN79355.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149]
          Length = 358

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D ++   KI
Sbjct: 282 GKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLSIGQEITAKVVDLNEAEKKI 341

Query: 684 KLSMKVVDQNT 694
            LSMK ++ +T
Sbjct: 342 SLSMKALEPDT 352



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V DFGAF+   G  DGL+HIS++S  RV     V + GD V V + D 
Sbjct: 192 QVGDTVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDQVKVLVKDI 250

Query: 678 DDRGKIKLSMKVVDQN 693
           +D  KI LS+K  + N
Sbjct: 251 NDT-KIALSLKFPETN 265


>gi|49482735|ref|YP_039959.1| hypothetical protein SAR0509 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427042|ref|ZP_06819679.1| hypothetical protein SIAG_02729 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|49240864|emb|CAG39531.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295129045|gb|EFG58674.1| hypothetical protein SIAG_02729 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 133

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|118380258|ref|XP_001023293.1| ATP-dependent helicase DHX8, RNA helicase HRH1 [Tetrahymena
           thermophila]
 gi|89305060|gb|EAS03048.1| ATP-dependent helicase DHX8, RNA helicase HRH1 [Tetrahymena
           thermophila SB210]
          Length = 1291

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           E + I  G V K+ +FG FV   +  G ++GLVHISQLS++RV    +V + G  V VK+
Sbjct: 320 EKDSILDGVVSKISEFGCFVTLENVGGRKEGLVHISQLSSKRVGNIQEVARIGQRVKVKV 379

Query: 675 LDFDDRGKIKLSMKVVDQNTG 695
           +      KI LSMK VDQ TG
Sbjct: 380 ISVIG-NKISLSMKDVDQITG 399


>gi|313888064|ref|ZP_07821742.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846019|gb|EFR33402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 696

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V ++ +FGAFV   G  DGL+HIS+LS  RV   SDVV  GD V V++L+ D ++
Sbjct: 467 IIEGTVQRLTNFGAFVDVGGV-DGLIHISELSWNRVKHPSDVVAPGDVVKVQVLNVDKEK 525

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L +K   Q   KP
Sbjct: 526 NRIALGLK---QTMEKP 539



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           ++DFGAFV      DGL+H+SQ+S E V K  D +  G+ V VK+ D D+   KI LS+K
Sbjct: 560 LLDFGAFVRLEQGVDGLLHVSQISREHVEKPQDKLSIGEEVTVKVTDIDEENQKISLSIK 619

Query: 689 VV 690
            +
Sbjct: 620 AL 621


>gi|320107286|ref|YP_004182876.1| Tex-like protein [Terriglobus saanensis SP1PR4]
 gi|319925807|gb|ADV82882.1| Tex-like protein [Terriglobus saanensis SP1PR4]
          Length = 750

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +R I DV +   + +G V  V  FGAF+     +DGLVHIS++S   +   S+V+K G
Sbjct: 634 ETVRDIADV-QPGMVLEGVVTNVTKFGAFIDVGVHQDGLVHISEISNRFIKDPSEVLKAG 692

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
             V  K+L  D + K I LS+K + +  G+
Sbjct: 693 QIVKAKVLSADSKTKRISLSIKALREPAGR 722


>gi|83312516|ref|YP_422780.1| TEX protein [Magnetospirillum magneticum AMB-1]
 gi|82947357|dbj|BAE52221.1| TEX protein [Magnetospirillum magneticum AMB-1]
          Length = 787

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E + ++ D+ +   I +G V  V +FGAFV     +DGLVHIS L+   V    +VV
Sbjct: 651 AFKEGVETLNDL-KPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVV 709

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKV 689
           K GD V VK+L+ D  R +I LSM++
Sbjct: 710 KPGDLVKVKVLEVDIKRSRIALSMRM 735


>gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 489

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 212 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFD 270

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 271 RERVSLSLKATQED 284



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FG FV      +GLVH+S+L+T  V     V K GD ++VK++D 
Sbjct: 294 KIGQIVPGKVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDI 353

Query: 678 D-DRGKIKLSMK 688
           D +R +I LS+K
Sbjct: 354 DLERRRISLSLK 365


>gi|15602666|ref|NP_245738.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721105|gb|AAK02885.1| RpS1 [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 549

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQILENLQEGSEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD + VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNSKLSGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347


>gi|307944634|ref|ZP_07659974.1| protein YhgF [Roseibium sp. TrichSKD4]
 gi|307772383|gb|EFO31604.1| protein YhgF [Roseibium sp. TrichSKD4]
          Length = 810

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A ++ +  I+D+ +  K+ +G V  V +FGAFV     +DGLVH+SQL+   V     VV
Sbjct: 658 ALQDGVEEISDLKQGMKL-EGTVTNVTNFGAFVDVGVHQDGLVHVSQLADRFVDDPHTVV 716

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688
           K GD V V +LD D  R +I +SMK
Sbjct: 717 KAGDIVKVTILDVDVPRKRISMSMK 741


>gi|290892098|ref|ZP_06555094.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-071]
 gi|290558221|gb|EFD91739.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-071]
          Length = 381

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ +
Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVN 331

Query: 679 DRGK-IKLSMK 688
           +  K + LS+K
Sbjct: 332 EVDKRLSLSIK 342



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   + ++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIK 256


>gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 236

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 21/227 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R    +R + A+ G++    GS+ F  G+T+AI  V        ++++ +    R 
Sbjct: 5   RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVD---RG 61

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP--VLPQTAQFPYTLRIVSEIT 430
             +  Y+ LP +  + ++ G   RR+I   ++   A++   +L    +    +R+   IT
Sbjct: 62  VIVCKYDMLPFSVPDRAKPGM-DRRDIEISQVITNALNRAIILEDMPRAMINVRVY--IT 118

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL---- 486
           ++D  +  A++  +S+A  DAG+P+   VA +A G + D     +  D+S +E+      
Sbjct: 119 QADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDH----VCLDLSKEEEDFHEGE 174

Query: 487 GHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           G  D  +A   + + I  +Q+D   G +S + +   ++  K G + I
Sbjct: 175 GATDVPIAFLPSKNEILLLQLD---GRVSRDELKKVIEVGKEGAMKI 218


>gi|270264442|ref|ZP_06192708.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13]
 gi|270041578|gb|EFA14676.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13]
          Length = 774

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + ++ D+ +   + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK G
Sbjct: 639 EGVETLNDL-QPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK+++ D  R +I LSM++ +Q
Sbjct: 698 DIVKVKVMEVDLQRKRIALSMRLDEQ 723


>gi|238027085|ref|YP_002911316.1| RNA binding S1 [Burkholderia glumae BGR1]
 gi|237876279|gb|ACR28612.1| RNA binding S1 [Burkholderia glumae BGR1]
          Length = 776

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLLP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 703 GQVVKVKVLEVDVKRQRIALTMRLADE 729


>gi|197303562|ref|ZP_03168601.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC
           29176]
 gi|197297560|gb|EDY32121.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC
           29176]
          Length = 362

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D +
Sbjct: 276 VGNVVTGKVARMTDFGAFVELAPGVDALLHVSQISKNHVDKPSDVLSIGQEITAKVVDLN 335

Query: 679 D-RGKIKLSMKVVDQNT 694
           +   KI LSMK ++ ++
Sbjct: 336 EAEKKISLSMKALESDS 352



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAFV   G  DGL+HIS++S  RV     V   GD + V + D  D  KI
Sbjct: 198 EGTVKNVTDFGAFVDLGGV-DGLLHISEMSWGRVDNPKKVFHVGDELKVLVKDIRDT-KI 255

Query: 684 KLSMKVVDQN 693
            LS+K  + N
Sbjct: 256 ALSLKFPETN 265


>gi|146305398|ref|YP_001185863.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina
           ymp]
 gi|145573599|gb|ABP83131.1| RNA binding S1 domain protein [Pseudomonas mendocina ymp]
          Length = 774

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + ++ D+ ++  + +G V  V +FGAFV     +DGLVHIS LS + +    + VK 
Sbjct: 637 QEGVETLNDL-KLGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPHEAVKA 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+++ D  R +I LSM++ D
Sbjct: 696 GDVVKVKVMEVDIPRNRIALSMRMGD 721


>gi|327460308|gb|EGF06645.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1057]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 LIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|293390073|ref|ZP_06634407.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950607|gb|EFE00726.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 548

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 6/87 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++++  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 EVLANLSEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + VK+L FD DR ++ L +K + Q+
Sbjct: 239 DEITVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347


>gi|261868288|ref|YP_003256210.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413620|gb|ACX82991.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 548

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 6/87 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++++  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 EVLANLSEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + VK+L FD DR ++ L +K + Q+
Sbjct: 239 DEITVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLK 347


>gi|115522443|ref|YP_779354.1| RNA-binding S1 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115516390|gb|ABJ04374.1| RNA binding S1 domain protein [Rhodopseudomonas palustris BisA53]
          Length = 784

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + ++ D+ +V  I +G V  V  FGAFV     +DGLVHIS +S   +    +VVK 
Sbjct: 643 KEGVETLKDL-KVGMILEGAVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREVVKP 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V VK+L+ D  R +I L++++ D+   K
Sbjct: 702 GDIVKVKVLEVDVARKRIALTLRLDDEVGAK 732


>gi|326803716|ref|YP_004321534.1| putative ribosomal protein S1 [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650493|gb|AEA00676.1| putative ribosomal protein S1 [Aerococcus urinae ACS-120-V-Col10a]
          Length = 440

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V ++ +FGAFV   G  DGLVHISQ++   V   SD ++ G TV VK+L  
Sbjct: 210 EEGEVVEGTVARLANFGAFVDLGGI-DGLVHISQIAHHHVNHPSDELEVGQTVKVKILSI 268

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS K
Sbjct: 269 DEDRDRISLSTK 280



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V +++DFGAFV      +GLVHISQ+S E V   SD ++EG  + VK+LD + +  ++
Sbjct: 302 GVVRRIVDFGAFVEVFPGVEGLVHISQISHEHVNHPSDKLEEGQDIKVKVLDVNPEEHRL 361

Query: 684 KLSMKVVDQ 692
            LS+K +++
Sbjct: 362 SLSIKALEE 370


>gi|294496935|ref|YP_003560635.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|295702302|ref|YP_003595377.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294346872|gb|ADE67201.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
 gi|294799961|gb|ADF37027.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 155

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDEVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|329937088|ref|ZP_08286717.1| transcriptional accessory protein [Streptomyces griseoaurantiacus
           M045]
 gi|329303695|gb|EGG47580.1| transcriptional accessory protein [Streptomyces griseoaurantiacus
           M045]
          Length = 795

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I+D+     + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 647 RDGVEKISDLTP-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKP 705

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+LD D  R +I L++++ D+
Sbjct: 706 GDIVKVKVLDVDIPRKRISLTLRLDDE 732


>gi|330501331|ref|YP_004378200.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina
           NK-01]
 gi|328915617|gb|AEB56448.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina
           NK-01]
          Length = 776

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + ++ D+ ++  + +G V  V +FGAFV     +DGLVHIS LS + +    + VK 
Sbjct: 637 QEGVETLNDL-KLGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPHEAVKA 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+++ D  R +I LSM++ D
Sbjct: 696 GDVVKVKVMEVDIPRNRIALSMRMGD 721


>gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
 gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
          Length = 238

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R++  +R +S      +   G+ L   GDT+ +   ++ T    Q    L GT +
Sbjct: 1   MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIET----QVPRWLKGTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E ++  A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWITAEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+DA             P+   VA +++G +K+G+   +L
Sbjct: 117 DVLQADGGTRTASITGAAVALVDALEKLQAAKKLKADPLVGLVAAVSVG-IKNGE---VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED     D  V  T  G
Sbjct: 173 LDLNYSEDSSCDTDLNVVMTQKG 195


>gi|332361158|gb|EGJ38962.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1056]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816]
          Length = 228

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|317470634|ref|ZP_07930019.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901769|gb|EFV23698.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 309

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +M +GAFV       GL+HISQ S +R+    ++V+EG  V VK+L   D  
Sbjct: 208 VLEGTVENIMPYGAFVDLGDGLSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLKIAD-N 266

Query: 682 KIKLSMKVVDQN 693
           KI LSMK ++++
Sbjct: 267 KISLSMKALEES 278


>gi|297587825|ref|ZP_06946469.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516]
 gi|297574514|gb|EFH93234.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516]
          Length = 697

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSDSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689
            DTV VK++  D DRG + LSMK+
Sbjct: 674 SDTVKVKIIGIDKDRGLVSLSMKL 697


>gi|282882121|ref|ZP_06290762.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
 gi|281298151|gb|EFA90606.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
          Length = 725

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ +FGAFV   G  DGLVHIS+LS  RV   S+VV  GD V V++L  D ++
Sbjct: 467 VIEGTVQRLTNFGAFVDI-GGIDGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEK 525

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L +K   Q T KP
Sbjct: 526 DRIALGLK---QTTEKP 539



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++DFGAFV      DGL+H+SQ+  E + K  D ++ G  V VK+++ D +  KI LS+K
Sbjct: 560 ILDFGAFVRLEEGVDGLLHVSQICREHIEKPQDRLEIGQEVEVKVIEIDQENKKISLSIK 619

Query: 689 VV 690
            +
Sbjct: 620 AL 621



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITD-VPEVNK--IYKGQVVKVMDFGAFVHFCGARDGL 646
           D  +K A SS+   +   EM+ +I +    + K  I  G+V+ V D    V+     DG+
Sbjct: 259 DKVIKEAVSSMENFDKG-EMMEAIDNSFKRIKKGEIVTGEVLYVTDNEVMVNLGYRSDGI 317

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           +   +LS    AK SD+ K+GD + V +L  DD  G + LS + V+
Sbjct: 318 ISKEELSKNTDAKPSDLYKQGDEIEVFVLKMDDGDGNVVLSARRVE 363


>gi|225375199|ref|ZP_03752420.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM
           16841]
 gi|225212950|gb|EEG95304.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM
           16841]
          Length = 748

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHISQ+S + +    +VV  GD V VK++  D  +
Sbjct: 680 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEVVSVGDIVEVKVMSVDLKK 739

Query: 681 GKIKLSMKV 689
            +I+L+MK+
Sbjct: 740 QRIQLTMKL 748


>gi|254435439|ref|ZP_05048946.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
 gi|207088550|gb|EDZ65822.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
          Length = 580

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE  A RE + S     E  K  KG V  + D+GAFV   G  DGL+HI+ +S +R+   
Sbjct: 195 AEYSAEREALLSSL---EEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 250

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S+VV  GD + V++L FD +R ++ L +K + ++  K +
Sbjct: 251 SEVVNIGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDL 289



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  V D+G FV      +GLVH+S++  T +    S +V+ G+ V V +LD D +R +
Sbjct: 301 GKVTNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRR 360

Query: 683 IKLSMK 688
           I L MK
Sbjct: 361 ISLGMK 366



 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G++  + DFG FV   G  DGLVH+S +S    A   +++   K+GD V   +L  D +R
Sbjct: 388 GEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVVLAIDPER 445

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++ +
Sbjct: 446 ERISLGVKQLEDD 458


>gi|187932428|ref|YP_001885998.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187720581|gb|ACD21802.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 635

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G+VV++ DFGAF+      DGLVHIS++S  R++  S+V+  G+ V  K+L+ D+  K +
Sbjct: 569 GKVVRINDFGAFIELEPGVDGLVHISKISFNRISHPSEVLSVGEEVKAKILEVDEENKRV 628

Query: 684 KLSMK 688
            LS+K
Sbjct: 629 SLSIK 633



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + + +V +  +FGAF+   G  DGL+H+SQ+S   V    D++K+G+ + VK++  D
Sbjct: 478 VGDVLEAEVKRFTNFGAFLDVNGI-DGLLHLSQISWNHVKNIEDILKKGEMIEVKIIALD 536

Query: 679 DRGKIKLSM 687
              K KLS+
Sbjct: 537 KENK-KLSL 544


>gi|152977194|ref|YP_001376711.1| general stress protein 13 [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025946|gb|ABS23716.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 133

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 29  IVKGKVTGIQDYGAFVALDDETQGLVHISEITNGYVKDVHDYLKIGDTVEVKVLSVDEEH 88

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  GK +V
Sbjct: 89  KKMSLSLKAAKRKQGKVLV 107


>gi|145638523|ref|ZP_01794132.1| transcription elongation factor GreB [Haemophilus influenzae
           PittII]
 gi|145272118|gb|EDK12026.1| transcription elongation factor GreB [Haemophilus influenzae
           PittII]
 gi|309750027|gb|ADO80011.1| Probable transcription accessory protein Tex [Haemophilus
           influenzae R2866]
          Length = 770

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKI 622
           G+V Q  AK  ID+   +        E+E                E +  ITD+ +   I
Sbjct: 595 GVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDL-KSGMI 653

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R 
Sbjct: 654 LEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVLRK 713

Query: 682 KIKLSMKVVD---QNTGK 696
           +I L+M++ +   +N GK
Sbjct: 714 RIALTMRLDESAVKNDGK 731


>gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
 gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
          Length = 491

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 11/102 (10%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQV-----VKVMDFGAFVHFCGARDGLVHISQL 652
           S  A +E  +  +RS      +NK+ KGQV       +++FGAFV   G  DGLVH+S+L
Sbjct: 189 SRRAWLEQTQSEVRSTF----LNKLEKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSEL 243

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 244 SWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQED 285



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D
Sbjct: 296 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370


>gi|256847157|ref|ZP_05552603.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
 gi|256715821|gb|EEU30796.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
          Length = 409

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+++   +        + +G+V ++ +FGAF+   G  DGLVH+S++S + V K SDV
Sbjct: 189 EAAKKIFSELA----AGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPSDV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ G  V VK+L+ D +R +I LS+K
Sbjct: 244 LEVGQDVKVKVLNVDPERERISLSIK 269



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V+ +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G  V VK+++ D
Sbjct: 285 VDTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVINVD 344

Query: 679 -DRGKIKLSMKVVDQ 692
            +R ++ LS+K +++
Sbjct: 345 PERQRLGLSIKALEE 359


>gi|205371987|ref|ZP_03224805.1| hypothetical protein Bcoam_00456 [Bacillus coahuilensis m4-4]
          Length = 152

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   +D +K GD V VK+L+ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVTVKVLNV 63

Query: 678 DDRGKIKLSM-KVVDQ 692
           +  GKI LS+ K VD+
Sbjct: 64  ESDGKIGLSIRKAVDK 79


>gi|110589224|gb|ABG77121.1| 30S ribosomal subunit protein S1 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 283

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 15/170 (8%)

Query: 525 KRGRLHILNEM-----SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           +R R  IL+       S+V S   L +   + R     + P  +R+   + GK +   V 
Sbjct: 24  RRSRQKILSTAASMARSRVASPLSLAISARSCRARWWIVRP--VRDTAYLEGKDLEFKVI 81

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +   + N      V ++  ++ E E + E  + + ++ E  ++ KG V  + D+GAFV  
Sbjct: 82  KLDRRRN-----NVVVSRRAVVEQEYSAEREKLLENLQEGQEL-KGVVKNLTDYGAFVDL 135

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            G  DGL+HI+ ++ +RV   SDVV+ GD + VK+L FD +R ++ L +K
Sbjct: 136 GGI-DGLLHITDMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 184


>gi|332366847|gb|EGJ44588.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1059]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195]
          Length = 245

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ AG     PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTSPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233

Query: 536 SKVLSESRLQL 546
            +VL +S  +L
Sbjct: 234 KEVLGDSLPEL 244


>gi|167746216|ref|ZP_02418343.1| hypothetical protein ANACAC_00921 [Anaerostipes caccae DSM 14662]
 gi|167654209|gb|EDR98338.1| hypothetical protein ANACAC_00921 [Anaerostipes caccae DSM 14662]
          Length = 309

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  +M +GAFV       GL+HISQ S +R+    ++V+EG  V VK+L   D  
Sbjct: 208 VLEGTVENIMPYGAFVDLGDGLSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLKIAD-N 266

Query: 682 KIKLSMKVVDQN 693
           KI LSMK ++++
Sbjct: 267 KISLSMKALEES 278


>gi|52425531|ref|YP_088668.1| 30S ribosomal protein S1 [Mannheimia succiniciproducens MBEL55E]
 gi|52307583|gb|AAU38083.1| RpsA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 549

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 6/87 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 EILANLAEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + VK+L FD DR ++ L +K + Q+
Sbjct: 239 DEITVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I     V     G+V  + D+G FV
Sbjct: 235 VNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAQNHPVGSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5]
 gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis]
 gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis]
 gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5]
          Length = 245

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ AG     PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233

Query: 536 SKVLSESRLQL 546
            +VL +S  +L
Sbjct: 234 KEVLGDSLPEL 244


>gi|315633973|ref|ZP_07889262.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393]
 gi|315477223|gb|EFU67966.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393]
          Length = 548

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 6/87 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++++  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 EVLANLSEGAEV----KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + VK+L FD DR ++ L +K + Q+
Sbjct: 239 DEIIVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+  VK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEIIVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|167947479|ref|ZP_02534553.1| 30S ribosomal protein S1 [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 222

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             V ++  ++ E E + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+
Sbjct: 27  NNVVVSRRAVVEQEYSAEREKLLENLQEGQEL-KGVVKNLTDYGAFVDLGGI-DGLLHIT 84

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++ +RV   SDVV+ GD + VK+L FD +R ++ L +K
Sbjct: 85  DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 123


>gi|332295332|ref|YP_004437255.1| RNA binding S1 domain protein [Thermodesulfobium narugense DSM
           14796]
 gi|332178435|gb|AEE14124.1| RNA binding S1 domain protein [Thermodesulfobium narugense DSM
           14796]
          Length = 113

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            Y+G V+    FGAFV       GLVHIS++S + V     V+K+GD + VK+L   + G
Sbjct: 9   FYEGVVIGTAKFGAFVELPSGEVGLVHISEVSDDYVKDVDTVIKKGDKIRVKVLSIKNDG 68

Query: 682 KIKLSMK 688
           KI+LS+K
Sbjct: 69  KIELSIK 75


>gi|327438483|dbj|BAK14848.1| transcriptional accessory protein [Solibacillus silvestris StLB046]
          Length = 723

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L   RV    DVV  GD  TVWV+ ++  ++G
Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLQKGRVKHPLDVVSLGDIVTVWVEKVEA-NKG 708

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 709 RISLTM 714


>gi|291542882|emb|CBL15992.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Ruminococcus bromii L2-63]
          Length = 163

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAFV    ++ G+VHIS+++   + + SD VK G  V VK+L  
Sbjct: 4   EVGMILEGKVSGITKFGAFVDLPDSKTGMVHISEVAPTFINEISDYVKVGQEVKVKVLAL 63

Query: 678 DDRGKIKLSMK 688
           +D GKI LSMK
Sbjct: 64  ND-GKISLSMK 73


>gi|227355092|ref|ZP_03839503.1| transcription accessory protein [Proteus mirabilis ATCC 29906]
 gi|227164879|gb|EEI49726.1| transcription accessory protein [Proteus mirabilis ATCC 29906]
          Length = 777

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKTGDIVKVKVLEVDLPR 711

Query: 681 GKIKLSMKV 689
            +I L+M++
Sbjct: 712 KRIALTMRL 720


>gi|148379766|ref|YP_001254307.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931983|ref|YP_001384064.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|148289250|emb|CAL83346.1| Composite protein include: 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase (N-terminus) and an RNA-associated domain
           (C-terminus) [Clostridium botulinum A str. ATCC 3502]
 gi|152928027|gb|ABS33527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A str. ATCC
           19397]
          Length = 638

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + +G+V +  DFGAF+   G  DGL+H+S++S  RV K  D +K GD + V +LD 
Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K+ LS+K + Q+  K +
Sbjct: 536 DKENKKLALSIKKLIQDPWKSV 557



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|77163718|ref|YP_342243.1| 30S ribosomal protein S1 [Nitrosococcus oceani ATCC 19707]
 gi|76882032|gb|ABA56713.1| SSU ribosomal protein S1P [Nitrosococcus oceani ATCC 19707]
          Length = 561

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE  A RE + S     E  K  KG V  + D+GAFV   G  DGL+HI+ +S +R+   
Sbjct: 176 AEYSAEREALLSSL---EEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 231

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S+VV  GD + V++L FD +R ++ L +K + ++  K +
Sbjct: 232 SEVVNIGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDL 270



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  V D+G FV      +GLVH+S++  T +    S +V+ G+ V V +LD D +R +
Sbjct: 282 GKVTNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRR 341

Query: 683 IKLSMK 688
           I L MK
Sbjct: 342 ISLGMK 347



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G++  + DFG FV   G  DGLVH+S +S    A   +++   K+GD V   +L  D +R
Sbjct: 369 GEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVVLAIDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++ +
Sbjct: 427 ERISLGVKQLEDD 439


>gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1]
          Length = 254

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +SV+  I  KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 1   MSVWATILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 55  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPIT 170

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++ +ED     D  V  + SG
Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGSG 209



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 30/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 85  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 139 TRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 198

Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
             +++ +SG+ D V +    E    + +++ + +      C  + +A S+
Sbjct: 199 TDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSE 248


>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
 gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
          Length = 495

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N++ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 209 LNQLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 267

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D +R ++ LS+K   ++
Sbjct: 268 VLDVDMERERVSLSLKATQED 288



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD V VK++D D
Sbjct: 299 IGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDID 358

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 359 LDRRRISLSLKQANE 373


>gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
 gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 22/231 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R +S + G+L+   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E +R  A + ++ G      RL  R++  V          + +  
Sbjct: 57  GWVTAEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D             +P+ + VA I+ G + +G   + L
Sbjct: 117 DVLQADGGTRTAAITGAWVALHDCLNWMYQRSMLKTIPLKENVAAISCG-IHEGTPVLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D + D       +F + GT  GI  +Q   +    S++ ++  L  A++G
Sbjct: 176 -DYAEDSKAETDANFVMTGT-GGIVEIQGTAEKTPFSQDELLSLLALARKG 224


>gi|310765657|gb|ADP10607.1| putative transcriptional accessory protein [Erwinia sp. Ejp617]
          Length = 775

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
 gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
          Length = 248

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 26/254 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR++  +R I+ + G+ +   GS L   GDT+ +V  T+    +++    + G  +
Sbjct: 1   MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATV----EDRVPPFMKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E +R G    R +   RL  RA+  V+   A    T+ + 
Sbjct: 57  GWVTAEYSMLPRATQSRNQREAAR-GKLGGRTMEIQRLIGRALRSVVDLQALGERTITLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +   ++ G+ +AL  A             PI+  +A +++G+V +G   + 
Sbjct: 116 CDVIQADGGTRTTSITGAFIALAIAVDKLAEKASFKSYPITDYLASVSVGVV-NGSPVL- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             D++ DED    +D  V  T +G    +Q   +    S + +   L  A+ G   ++ +
Sbjct: 174 --DLNYDEDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGK 231

Query: 535 MSKVLSESRLQLGE 548
             +VL ++  ++GE
Sbjct: 232 QREVLGQAGARIGE 245


>gi|294101537|ref|YP_003553395.1| Tex-like protein protein-like protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616517|gb|ADE56671.1| Tex-like protein protein-like protein [Aminobacterium colombiense
           DSM 12261]
          Length = 718

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 613 ITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ITD+  + K  +  G +  V  FGAFV     +DGLVHIS LS + ++    VV  G  V
Sbjct: 633 ITDISHLKKGMVLPGIITNVTAFGAFVDIGVHQDGLVHISALSDKYISSPHAVVSPGQQV 692

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            V ++D D DR +I LSMK  D
Sbjct: 693 KVIVMDIDMDRKRISLSMKTSD 714


>gi|257898342|ref|ZP_05677995.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|257836254|gb|EEV61328.1| RNA binding protein S1 [Enterococcus faecium Com15]
          Length = 726

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V   +DFGAFV     +DGLVHIS+LS + V   +DVV  GD  TVW++ +D   +G+
Sbjct: 657 GTVRNAIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|256394808|ref|YP_003116372.1| 30S ribosomal protein S1 [Catenulispora acidiphila DSM 44928]
 gi|256361034|gb|ACU74531.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928]
          Length = 493

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D
Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPEQVVNVGDEIFVKVIDID 354

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 355 LDRRRISLSLKQANE 369



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 212 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 270

Query: 680 RGKIKLSMK 688
           R ++ LS+K
Sbjct: 271 RERVSLSLK 279


>gi|16077131|ref|NP_387944.1| hypothetical protein BSU00630 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221307873|ref|ZP_03589720.1| hypothetical protein Bsubs1_00320 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312195|ref|ZP_03594000.1| hypothetical protein BsubsN3_00320 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317128|ref|ZP_03598422.1| hypothetical protein BsubsJ_00320 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321391|ref|ZP_03602685.1| hypothetical protein BsubsS_00320 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329565|ref|ZP_06872051.1| hypothetical protein BSU6633_00590 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672762|ref|YP_003864433.1| hypothetical protein BSUW23_00325 [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313733|ref|YP_004206020.1| hypothetical protein BSn5_11885 [Bacillus subtilis BSn5]
 gi|586889|sp|P37560|YABR_BACSU RecName: Full=Uncharacterized protein yabR
 gi|385178|gb|AAB38380.1| unknown [Bacillus subtilis]
 gi|467452|dbj|BAA05298.1| unknown [Bacillus subtilis]
 gi|2632330|emb|CAB11839.1| putative RNA degradation protein; polyribonucleotide
           nucleotidyltransferase or phosphorylase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291482435|dbj|BAI83510.1| hypothetical protein BSNT_00104 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153308|gb|EFG94171.1| hypothetical protein BSU6633_00590 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411005|gb|ADM36123.1| hypothetical protein BSUW23_00325 [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|320020007|gb|ADV94993.1| hypothetical protein BSn5_11885 [Bacillus subtilis BSn5]
          Length = 128

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G++  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161]
 gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818]
 gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818]
          Length = 248

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|227833405|ref|YP_002835112.1| putative transcriptional accessory protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184393|ref|ZP_06043814.1| putative transcriptional accessory protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454421|gb|ACP33174.1| putative transcriptional accessory protein [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 759

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAF+     +DGLVH+S +S + V+   DVV+ G  V VK+++ D +R
Sbjct: 643 ILEGTVTNVAAFGAFIDIGVHQDGLVHVSAMSHKFVSDPHDVVRSGQVVKVKVMEVDVER 702

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I LS++ +D   GKP
Sbjct: 703 QRIGLSLR-LDDEPGKP 718


>gi|259910055|ref|YP_002650411.1| putative transcriptional accessory protein [Erwinia pyrifoliae
           Ep1/96]
 gi|224965677|emb|CAX57209.1| putative transcriptional accessory protein [Erwinia pyrifoliae
           Ep1/96]
 gi|283480154|emb|CAY76070.1| Protein yhgF [Erwinia pyrifoliae DSM 12163]
          Length = 775

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|325186819|emb|CCA21364.1| PREDICTED: hypothetical protein isoform 1 [Albugo laibachii Nc14]
          Length = 1138

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTER-VAKTSDVVKEGDTVWVK 673
           +V  +Y G+V +VM+ G FV F    G ++GLVH+S L+  R +    ++V+ G  V VK
Sbjct: 168 KVYGVYSGKVSRVMERGVFVEFSVKNGRKEGLVHVSNLTGNRSIEHPKEIVRSGQHVKVK 227

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++      KI LSM+ VDQ TG+ ++
Sbjct: 228 VISISG-SKILLSMRDVDQKTGRDLL 252


>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
          Length = 245

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 19/234 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR--- 62

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               S +   R      Y+    +T E  R     R+    G   R+     +       
Sbjct: 63  ----SRALPDRALVNCQYSSATFSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPR 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALTDLS 174

Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             E+  G     +A       I  ++MD ++       ++ A  QA RG +H L
Sbjct: 175 HVEEASGSPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARG-VHTL 227


>gi|291619238|ref|YP_003521980.1| YhgF [Pantoea ananatis LMG 20103]
 gi|291154268|gb|ADD78852.1| YhgF [Pantoea ananatis LMG 20103]
          Length = 774

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAF+     +DGLVHIS LS + V     VVK GD V VK+++ D  R
Sbjct: 652 VLEGAVTNVTNFGAFIDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|254293974|ref|YP_003059997.1| RNA binding S1 domain protein [Hirschia baltica ATCC 49814]
 gi|254042505|gb|ACT59300.1| RNA binding S1 domain protein [Hirschia baltica ATCC 49814]
          Length = 736

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHISQL+ + V+   D+VK GD V V +++ D  R +
Sbjct: 659 EGTVTNVTAFGAFVDIGVHQDGLVHISQLADKFVSDPHDIVKAGDIVNVTVMEVDVQRKR 718

Query: 683 IKLSMK 688
           I LSMK
Sbjct: 719 IGLSMK 724


>gi|225027342|ref|ZP_03716534.1| hypothetical protein EUBHAL_01598 [Eubacterium hallii DSM 3353]
 gi|224955344|gb|EEG36553.1| hypothetical protein EUBHAL_01598 [Eubacterium hallii DSM 3353]
          Length = 241

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G+V  +M +GAFV       GLVHISQ++ +R+   ++V+K G  V VK+L  
Sbjct: 133 EAGAVLTGKVESLMPYGAFVDLGNDISGLVHISQIAQKRIESPAEVLKAGQEVNVKVLKV 192

Query: 678 DDRGKIKLSMKVVDQ 692
           ++ GKI LSMK +++
Sbjct: 193 EN-GKISLSMKALEE 206


>gi|153937572|ref|YP_001387604.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum A str. Hall]
 gi|152933486|gb|ABS38985.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A str. Hall]
          Length = 638

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + +G+V +  DFGAF+   G  DGL+H+S++S  RV K  D +K GD + V +LD 
Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K+ LS+K + Q+  K +
Sbjct: 536 DKENKKLALSIKKLIQDPWKSV 557



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|296332843|ref|ZP_06875303.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305673189|ref|YP_003864861.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150123|gb|EFG91012.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411433|gb|ADM36552.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 719

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV  +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|260424761|ref|ZP_05733199.2| S1 RNA-binding domain protein [Dialister invisus DSM 15470]
 gi|260403099|gb|EEW96646.1| S1 RNA-binding domain protein [Dialister invisus DSM 15470]
          Length = 174

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  +  FG FV     + GLVHIS+++ E V+  +D +K  D V VK++  
Sbjct: 4   EVGSIVEGTVTGLAKFGVFVEIADKKIGLVHISEVAGEYVSDVNDYLKLHDKVKVKIISV 63

Query: 678 DDRGKIKLSMK 688
           D++GKI LS+K
Sbjct: 64  DEKGKIALSIK 74


>gi|257887236|ref|ZP_05666889.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257823290|gb|EEV50222.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
          Length = 726

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD  T W++ +D   +G+
Sbjct: 657 GTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTAWIEQVD-TKKGR 715

Query: 683 IKLSM 687
           I L+M
Sbjct: 716 ISLTM 720


>gi|160880581|ref|YP_001559549.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160429247|gb|ABX42810.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 643

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V  +  G+V ++ +FGAFV      D L+H+SQ+S E + K +D +K G  V  K++DF 
Sbjct: 559 VGNVVTGRVARMTEFGAFVELEPGVDALLHVSQISKEHIEKPADALKIGQEVTAKVVDFN 618

Query: 678 DDRGKIKLSMK 688
           +D  KI LS+K
Sbjct: 619 NDEKKISLSIK 629



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E+ +++    +V  + +G V  V DFGAF+   GA DGL+HIS++S  R+     V K 
Sbjct: 464 QELSKALFAKIKVGDVVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRIESPKKVFKV 522

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GDTV   + D     KI LS+K  +QN
Sbjct: 523 GDTVKAFIKDIQGE-KIALSLKFPEQN 548


>gi|90415942|ref|ZP_01223875.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2207]
 gi|90332316|gb|EAS47513.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2207]
          Length = 800

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I +I D+     + +G V  V +FGAFV     +DGLVHIS ++   V    +VVK 
Sbjct: 642 KEGIETIKDLAPA-MLLEGVVTNVTNFGAFVDVGVHQDGLVHISAIANRFVKDPHEVVKT 700

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD V VK+++ D  R +I LSM++ D+ T
Sbjct: 701 GDIVKVKVMEVDVARKRIALSMRMDDEVT 729


>gi|89895001|ref|YP_518488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Desulfitobacterium hafniense Y51]
 gi|89334449|dbj|BAE84044.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 661

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV++  FGAFV      D L+HISQLS +RV K  DVVK GD V  K+++   +  +I
Sbjct: 561 GKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECKPEEKRI 620

Query: 684 KLSMK 688
            LS++
Sbjct: 621 SLSIR 625



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV   G  DGL+H+S ++  R+   S+ V  GD V V++L  D ++
Sbjct: 473 VVSGVVKRLAQFGAFVDIGGV-DGLLHVSDIAYTRIKHPSEYVNVGDEVEVQILKVDKEQ 531

Query: 681 GKIKLSMK 688
           GKI L +K
Sbjct: 532 GKISLGLK 539


>gi|70727502|ref|YP_254418.1| hypothetical protein SH2503 [Staphylococcus haemolyticus JCSC1435]
 gi|68448228|dbj|BAE05812.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       +P
Sbjct: 64  ADDGKISLSIKKAKDRPRRP 83


>gi|321314149|ref|YP_004206436.1| putative RNA helicase [Bacillus subtilis BSn5]
 gi|320020423|gb|ADV95409.1| putative RNA helicase [Bacillus subtilis BSn5]
          Length = 719

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV  +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
 gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
          Length = 481

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   +     VVK GD  +VK++D D
Sbjct: 292 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHIEAPEQVVKVGDGAFVKIIDID 351

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 352 LERRRISLSLKQANE 366



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   ++VV+ GD V V++L+ D  
Sbjct: 209 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPAEVVEVGDEVTVEVLEVDMS 267

Query: 680 RGKIKLSMK 688
           R ++ LS+K
Sbjct: 268 RERVSLSLK 276


>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
          Length = 245

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 24/240 (10%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R + A++G+  +  GS+   +G+T+A+ VV  G  E  +   S
Sbjct: 6   LLSDQGYRLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-VRMSRS 63

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ------- 418
            +   R      Y+    +T E        RR  G  +    ++H  L QT +       
Sbjct: 64  KTLHDRAVINCQYSMATFSTAE------RKRRPHGDRKSTEMSLH--LKQTFEAAVLTNL 115

Query: 419 FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +P + + I  +I +SDG +  A V  ++LA++DAG+P+   V     G V    D   L+
Sbjct: 116 YPRSQIDIYVKILQSDGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFV----DETPLA 171

Query: 478 DISGDEDHLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           D+   E+  G     +A    G  I  +QMD ++       ++ A   A +G   +L+++
Sbjct: 172 DLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQV 231


>gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
 gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S]
 gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003]
 gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
          Length = 248

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|21759394|sp|O42872|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
           Full=Ribosomal RNA-processing protein 41
 gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
           [Schizosaccharomyces pombe]
          Length = 242

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 13/233 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R+   ++G+    +GS+    G+T+ + +V       E  + S +   R
Sbjct: 12  LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVD---GPSEPVIKSKARADR 68

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
               +  N    +T +V +     RR I    LA +     + QT  +P + + +   + 
Sbjct: 69  TFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           + DG+   + +  ++LAL+DAG+P+   V     G+V+     ++L   S +E  L  + 
Sbjct: 128 QDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESD---MLLDLNSLEESALSWLT 184

Query: 491 FKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             V G    +  MQ++  +     E++M MA+     G  HI N M   + +S
Sbjct: 185 VAVLGNIKKVVYMQLETSMHLDYLESVMNMAIA----GSEHIYNTMQSAVRQS 233


>gi|83745880|ref|ZP_00942937.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
            solanacearum UW551]
 gi|83727570|gb|EAP74691.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
            solanacearum UW551]
          Length = 1257

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622  IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 1143 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 1202

Query: 681  GKIKLSMKVVDQNTGKP 697
             +I L+M++ D+    P
Sbjct: 1203 NRIGLTMRLTDEPGQAP 1219


>gi|219669404|ref|YP_002459839.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219539664|gb|ACL21403.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfitobacterium
           hafniense DCB-2]
          Length = 661

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV++  FGAFV      D L+HISQLS +RV K  DVVK GD V  K+++   +  +I
Sbjct: 561 GKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECKPEEKRI 620

Query: 684 KLSMK 688
            LS++
Sbjct: 621 SLSIR 625


>gi|306833370|ref|ZP_07466497.1| 30S ribosomal protein S1 [Streptococcus bovis ATCC 700338]
 gi|304424140|gb|EFM27279.1| 30S ribosomal protein S1 [Streptococcus bovis ATCC 700338]
          Length = 398

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+LD +   
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVNVKVLDVNAAA 340

Query: 682 -KIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I KG+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 192 EEGAIVKGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSI 250

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 251 DEEAGRVSLSLK 262


>gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319]
 gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319]
          Length = 248

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R +S     L+   GS L   GDT+ I   ++    D++    + G  +
Sbjct: 1   MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASI----DDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +PI   +A  ++G+   G++ I+ 
Sbjct: 117 DVIQADGGTRTASITGAFVAMVLAFGKLVEENKLTEIPIRDYLAATSVGI--HGENSIL- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  +  T SG
Sbjct: 174 -DLNYEEDSTAEVDMNIVMTGSG 195


>gi|291482888|dbj|BAI83963.1| hypothetical protein BSNT_00811 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 719

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV  +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|292489911|ref|YP_003532801.1| protein YhgF [Erwinia amylovora CFBP1430]
 gi|292900947|ref|YP_003540316.1| transcription accessory protein [Erwinia amylovora ATCC 49946]
 gi|291200795|emb|CBJ47929.1| putative transcription accessory protein [Erwinia amylovora ATCC
           49946]
 gi|291555348|emb|CBA23713.1| Protein yhgF [Erwinia amylovora CFBP1430]
          Length = 777

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|289449430|ref|YP_003475339.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289183977|gb|ADC90402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 704

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           +  I  G+VV++  FGAFV      D L HISQ+ST R+AK S+V+KEG  V  ++++  
Sbjct: 601 IGTIVHGKVVRMFPFGAFVEIADGVDALCHISQISTARLAKPSEVLKEGMEVDARVMEVS 660

Query: 678 DDRGKIKLSMKVV 690
           +++ +I +S+K V
Sbjct: 661 NEQRRISISIKEV 673



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  + DFGAFV   G  DGLVH+S+LS  R+   S+V+K GD + V + +FD
Sbjct: 516 VGDIREGVVRSLTDFGAFVDI-GGVDGLVHVSELSWNRIKHPSEVIKVGDHIQVYVKEFD 574

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I L  K ++ +
Sbjct: 575 PERKRISLGYKRIEDD 590


>gi|119962080|ref|YP_946901.1| transcriptional accessory protein [Arthrobacter aurescens TC1]
 gi|119948939|gb|ABM07850.1| putative transcriptional accessory protein [Arthrobacter aurescens
           TC1]
          Length = 818

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +   I +G V  V  FGAFV     +DGLVH+S LS + V+   ++VK G
Sbjct: 648 EGIEKISDL-KPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSG 706

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK+L+ D +R +I L++++ D+
Sbjct: 707 QVVRVKVLEADPERKRISLTLRLDDE 732


>gi|50812188|ref|NP_388359.2| RNA helicase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308302|ref|ZP_03590149.1| hypothetical protein Bsubs1_02703 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312624|ref|ZP_03594429.1| hypothetical protein BsubsN3_02679 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317547|ref|ZP_03598841.1| hypothetical protein BsubsJ_02638 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321823|ref|ZP_03603117.1| hypothetical protein BsubsS_02709 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81341845|sp|O31489|YDCI_BACSU RecName: Full=Uncharacterized protein ydcI
 gi|32468703|emb|CAB12285.2| putative RNA helicase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 719

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV  +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|312174095|emb|CBX82348.1| Protein yhgF [Erwinia amylovora ATCC BAA-2158]
          Length = 777

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain)
           [Burkholderia rhizoxinica HKI 454]
          Length = 801

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + ++ D+     I +G V  V  FGAF+     +DGLVH+S +ST+ V    +VVK 
Sbjct: 667 REGVETLADL-SPGMILEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFVKDPHEVVKA 725

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V VK+L+ D  R +I L+M++ D
Sbjct: 726 GQVVTVKVLEVDLKRQRISLTMRLSD 751


>gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
 gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
 gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
          Length = 405

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V K++ FGAF+    + +GLVHIS+++   +   + VVK GD V VK+++ +
Sbjct: 291 VGTIVDGKVTKIVPFGAFIELGQSIEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEIN 350

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            +R +I LSMK    + G  I
Sbjct: 351 PERRRISLSMKAAAADLGFEI 371


>gi|121535071|ref|ZP_01666888.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306321|gb|EAX47246.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + +FGAFV   G + GLVHIS+++   V    D +KE D V VK+L  D+RGKI LS++
Sbjct: 16  ITNFGAFVELPGGKVGLVHISEVADVYVRDVKDFLKEQDRVKVKVLSIDERGKIGLSIR 74


>gi|150015374|ref|YP_001307628.1| 30S ribosomal protein S1 [Clostridium beijerinckii NCIMB 8052]
 gi|149901839|gb|ABR32672.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 384

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS  + E E   +  ++I D  +  +   G V K++ FGAFV   G  +GL+H+S LS 
Sbjct: 172 IASRRIIEEEEYNKNKKNIWDNLKEGEKRNGVVKKIVKFGAFVDIGGV-EGLIHLSDLSW 230

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           ERV K  D+VKEGD V V + +  DR   +LS+
Sbjct: 231 ERVNKPEDIVKEGDNVEVFIGNV-DRKNERLSL 262



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I++G+V+++  FGAFV      +GLVHI++++ E +AK SDV++    V VK+L  + + 
Sbjct: 284 IFEGKVIRLTTFGAFVELFDGIEGLVHITEITDEHIAKPSDVLEANQKVKVKVLSVNREE 343

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 344 KRIALSIK 351


>gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 484

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     V K GD V+VK++D D
Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 353 LERRRISLSLKQANE 367



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D D
Sbjct: 210 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20]
 gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505]
          Length = 484

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     V K GD V+VK++D D
Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 353 LERRRISLSLKQANE 367



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D D
Sbjct: 210 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|302879053|ref|YP_003847617.1| Tex-like protein-like [Gallionella capsiferriformans ES-2]
 gi|302581842|gb|ADL55853.1| Tex-like protein-like [Gallionella capsiferriformans ES-2]
          Length = 779

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE I  I+D+ + + I +G V  V  FGAFV     +DGLVHIS L+   V     VVK 
Sbjct: 651 REGIEKISDL-QPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALANSFVKDPHTVVKA 709

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKV 689
           G  V VK+L+ D+ R +I L+M++
Sbjct: 710 GQIVKVKVLEVDEKRKRIALTMRL 733


>gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
 gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
          Length = 254

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +SV+  I  KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 1   MSVWSTILGKVSETS------RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCN 54

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 55  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++ +ED     D  V  + +G
Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIECGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 85  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198

Query: 174 --LDLFVSGTQDAV 185
             +++ +SG  D V
Sbjct: 199 TDMNVVMSGNGDFV 212


>gi|258515332|ref|YP_003191554.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779037|gb|ACV62931.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 676

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I   +VV++  FGAFV      +GLVHIS L+   V K  DVV EG+ V VK+L  D
Sbjct: 569 VGAIVAAKVVRLAPFGAFVQLEPGVEGLVHISHLADHHVEKPEDVVSEGEEVNVKVLSVD 628

Query: 679 DRGK-IKLSMKVVDQNTG--KPI 698
            + K I+LS+K V +     KP+
Sbjct: 629 TQEKRIRLSIKEVTKKVKEEKPV 651



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + +GQ V     ++ +FGAFV   G  DGL+HIS+++  RV   S++V+ GD V V 
Sbjct: 479 LNSLQEGQTVSGIVRRITNFGAFVDIGGV-DGLLHISEMAWYRVTHPSEIVQVGDEVTVM 537

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L  D +  KI L +K V  N
Sbjct: 538 VLKIDRNADKISLGLKQVLAN 558


>gi|322411371|gb|EFY02279.1| transcription accessory protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 710

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS++S   V   S VV  GD  TVWV  +D  DR 
Sbjct: 639 EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|260583466|ref|ZP_05851214.1| 30S ribosomal protein S1 [Granulicatella elegans ATCC 700633]
 gi|260158092|gb|EEW93160.1| 30S ribosomal protein S1 [Granulicatella elegans ATCC 700633]
          Length = 407

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++ +FGAF+   G  DGLVH+S++S E V+K SD +  G TV  K++  D ++
Sbjct: 208 IVTGKVARLTNFGAFIDLGGI-DGLVHVSEISHEHVSKPSDFLAVGQTVEAKVIGLDAEK 266

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 267 GRVSLSIK 274



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +IT+   V+    G V +   FGAFV      +GLVHISQ++ + +A   +V++ G  V 
Sbjct: 283 NITERAAVDSTLVGTVKRFAAFGAFVELFPGVEGLVHISQIAHKHIATPQEVLQVGQEVS 342

Query: 672 VKLLDFDDRGK-IKLSMKVVDQ 692
           VK+L+ ++  K I LS+K +++
Sbjct: 343 VKVLEVNEAEKRISLSIKALEE 364


>gi|69245447|ref|ZP_00603442.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257879858|ref|ZP_05659511.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257882584|ref|ZP_05662237.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257886018|ref|ZP_05665671.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257891699|ref|ZP_05671352.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257894174|ref|ZP_05673827.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|258614286|ref|ZP_05712056.1| hypothetical protein EfaeD_01107 [Enterococcus faecium DO]
 gi|260559531|ref|ZP_05831712.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|261206682|ref|ZP_05921380.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289565043|ref|ZP_06445497.1| hypothetical protein EDAG_00095 [Enterococcus faecium D344SRF]
 gi|293553696|ref|ZP_06674320.1| S1-type RNA-binding domain-containing protein [Enterococcus faecium
           E1039]
 gi|293563197|ref|ZP_06677653.1| S1-type RNA-binding domain [Enterococcus faecium E1162]
 gi|293570119|ref|ZP_06681199.1| S1-type RNA-binding protein [Enterococcus faecium E1071]
 gi|294614896|ref|ZP_06694787.1| S1-type RNA-binding protein [Enterococcus faecium E1636]
 gi|294618632|ref|ZP_06698171.1| RNA-binding S1 domain protein [Enterococcus faecium E1679]
 gi|294623708|ref|ZP_06702541.1| RNA-binding S1 domain protein [Enterococcus faecium U0317]
 gi|314938211|ref|ZP_07845511.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
 gi|314943106|ref|ZP_07849905.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|314949303|ref|ZP_07852646.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
 gi|314952236|ref|ZP_07855251.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|314992094|ref|ZP_07857544.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|314996277|ref|ZP_07861333.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|68195829|gb|EAN10265.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257814086|gb|EEV42844.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257818242|gb|EEV45570.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257821874|gb|EEV49004.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257828059|gb|EEV54685.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257830553|gb|EEV57160.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260074630|gb|EEW62951.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|260079175|gb|EEW66868.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289163250|gb|EFD11096.1| hypothetical protein EDAG_00095 [Enterococcus faecium D344SRF]
 gi|291587491|gb|EFF19375.1| S1-type RNA-binding protein [Enterococcus faecium E1071]
 gi|291592182|gb|EFF23800.1| S1-type RNA-binding protein [Enterococcus faecium E1636]
 gi|291595151|gb|EFF26489.1| RNA-binding S1 domain protein [Enterococcus faecium E1679]
 gi|291596923|gb|EFF28141.1| RNA-binding S1 domain protein [Enterococcus faecium U0317]
 gi|291602271|gb|EFF32499.1| S1-type RNA-binding domain-containing protein [Enterococcus faecium
           E1039]
 gi|291604847|gb|EFF34325.1| S1-type RNA-binding domain [Enterococcus faecium E1162]
 gi|313589521|gb|EFR68366.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|313593308|gb|EFR72153.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|313595631|gb|EFR74476.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|313598165|gb|EFR77010.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|313642407|gb|EFS06987.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
 gi|313644309|gb|EFS08889.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
          Length = 156

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK++  
Sbjct: 4   EVGAKLQGKVSGITNFGAFIDLGAGKTGLVHISEVSNGYVKDIHDVLSVGDEVTVKVISV 63

Query: 678 DDRGKIKLSMK 688
           +D GKI LS++
Sbjct: 64  NDDGKIGLSIR 74


>gi|295092746|emb|CBK78853.1| Transcriptional accessory protein [Clostridium cf. saccharolyticum
           K10]
          Length = 713

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHISQ++   +    +VV  GD V VK+LD + ++
Sbjct: 645 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVEVKVLDVNLEK 704

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 705 KRIGLTMKL 713


>gi|289551693|ref|YP_003472597.1| ribosomal protein S1 domain-containing RNA binding protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|315660324|ref|ZP_07913177.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
 gi|289181224|gb|ADC88469.1| ribosomal protein S1 domain-containing RNA binding protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|315494613|gb|EFU82955.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
          Length = 132

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSIGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       +P
Sbjct: 64  ADDGKISLSIKKAKDRPRRP 83


>gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 492

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   ++VV+ G  V V++LD D D
Sbjct: 218 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPTEVVEVGQEVTVEVLDVDMD 276

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 277 RERVSLSLKATQED 290



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D V VK++D 
Sbjct: 300 QMGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDI 359

Query: 678 D-DRGKIKLSMK 688
           D +R +I LS+K
Sbjct: 360 DLERRRISLSLK 371


>gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC
           484]
 gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484]
          Length = 510

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD V+VK++D D
Sbjct: 316 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDID 375

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 376 LERRRISLSLKQANE 390



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E  +  +RS      +  ++  G V  +++FGAFV   G  DGLVH+S+LS + 
Sbjct: 209 SRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 267

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 268 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQED 305


>gi|323126833|gb|ADX24130.1| putative transcription accessory protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 710

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS++S   V   S VV  GD  TVWV  +D  DR 
Sbjct: 639 EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|300173207|ref|YP_003772373.1| transcription accessory protein [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887586|emb|CBL91554.1| transcription accessory protein [Leuconostoc gasicomitatum LMG
           18811]
          Length = 731

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V+DFGAFV      DGLVHIS+L+  RV   S+VV  GD V V ++D D+ R +
Sbjct: 659 QGTVRNVVDFGAFVDLGVKHDGLVHISRLAKRRVKAPSEVVAVGDIVDVWVVDIDEKRQR 718

Query: 683 IKLSM 687
           I L+M
Sbjct: 719 IGLTM 723


>gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
 gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
          Length = 486

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 11/123 (8%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-----VM 631
           I +Q  AK+   D     +  S  A +E  +  +RS      +N++ KGQV +     ++
Sbjct: 162 IGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTF----LNQLEKGQVREGVVSSIV 217

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K  
Sbjct: 218 NFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKAT 276

Query: 691 DQN 693
            ++
Sbjct: 277 QED 279



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G+ ++VK++D D
Sbjct: 290 LGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLAEQVVSVGEELFVKIIDID 349

Query: 679 -DRGKIKLSMKVVDQ 692
            DR +I LS+K  ++
Sbjct: 350 MDRRRISLSLKQANE 364


>gi|251782010|ref|YP_002996312.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390639|dbj|BAH81098.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 710

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS++S   V   S VV  GD  TVWV  +D  DR 
Sbjct: 639 EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|153811995|ref|ZP_01964663.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174]
 gi|149831894|gb|EDM86980.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174]
          Length = 301

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 603 IEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +A+E++R+  +    NK+         +G V  +  +GAFV+      GLVHISQ+  
Sbjct: 171 ILSAKEILRAKAEEERKNKVSNLEIGLVTEGTVESLQPYGAFVNLGNGLSGLVHISQICE 230

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +R+ K S+V+  GDTV VK+    D GK+ LS+K
Sbjct: 231 KRIKKPSEVLAVGDTVKVKVTAIKD-GKLSLSIK 263


>gi|28572628|ref|NP_789408.1| 30S ribosomal protein S1 [Tropheryma whipplei TW08/27]
 gi|28410760|emb|CAD67146.1| 30s ribosomal protein S1 [Tropheryma whipplei TW08/27]
          Length = 473

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G V KVM+FG FV      +GL H+S+L    +  T DV   GD V+VK++D D
Sbjct: 286 IGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLESTEDVFSPGDEVFVKIVDID 345

Query: 679 -DRGKIKLSMK 688
            D  +I LS+K
Sbjct: 346 IDSRRISLSLK 356



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  ++ FGAFV   G  DGLVHIS++S + V + S+V+K G+ V V++L+ D +
Sbjct: 203 QVRKGTVSSIVSFGAFVDLGGI-DGLVHISEISWKHVTQPSEVLKVGEEVTVEILEVDSE 261

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS++   ++
Sbjct: 262 RHRVSLSLRATQED 275


>gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
 gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
          Length = 256

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+ + +R I  +   L+   GS L   GDT+ I   ++    DE+    + G  +
Sbjct: 1   MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASI----DERVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL---MD--------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+   MD        A  PI+  +A  ++G++K+    + L
Sbjct: 117 DVIQADGGTRTASITGAFVAMSQAMDKLYSSKKLAHYPINDFLAATSVGILKNKQAAVDL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           + I   ED    +D  V  T SG
Sbjct: 177 NYI---EDSSAEVDMNVVMTGSG 196


>gi|255525217|ref|ZP_05392159.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           carboxidivorans P7]
 gi|296188737|ref|ZP_06857124.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           carboxidivorans P7]
 gi|255511080|gb|EET87378.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           carboxidivorans P7]
 gi|296046664|gb|EFG86111.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           carboxidivorans P7]
          Length = 641

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV+  +FGAFV      D LVHISQ+S +R+ K  D +K G+ +  K+L+ + +  KI
Sbjct: 572 GKVVRFANFGAFVELEPGVDALVHISQISHKRINKPEDALKIGEEIKAKILEVNKENKKI 631

Query: 684 KLSMKVVDQ 692
            LS+K VD+
Sbjct: 632 GLSIKEVDE 640



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 9/84 (10%)

Query: 603 IEAAREMIRSITDVPE--------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           + + RE+++S  +V E         + + +G+V ++ +FGAFV   G  DGL+H+S++S 
Sbjct: 452 VASRRELLKSEKEVKEEGTWNSLEKDTVVEGEVKRLTNFGAFVDVQGV-DGLLHVSEISW 510

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD 678
            RV K  D +K G  V V +LD D
Sbjct: 511 GRVEKPEDSLKIGKKVKVYILDID 534


>gi|238788975|ref|ZP_04632765.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC
           33641]
 gi|238723002|gb|EEQ14652.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC
           33641]
          Length = 790

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEIDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|301064798|ref|ZP_07205172.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
 gi|300441092|gb|EFK05483.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
          Length = 493

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRG- 681
           G+V K+M FGAFV      +G+VHIS+L   RV K SDV++ G+TV VK+L    D++  
Sbjct: 214 GRVTKLMPFGAFVELTPGVEGMVHISELGWSRVEKPSDVLQVGETVMVKVLGVAPDEKSK 273

Query: 682 --KIKLSMK 688
             KI LS+K
Sbjct: 274 QMKISLSIK 282



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL+  + A +   S+TD  +   + +G+V +   FGAFV      +GLVHIS++S  +RV
Sbjct: 278 SLSIKQTADDPWLSVTDRFKEGDVVEGKVSRCAPFGAFVEIEPGIEGLVHISEMSYRKRV 337

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            K  DVV  GD + V + + D  R +I LSM+ V+
Sbjct: 338 LKAEDVVSPGDLIQVLIKEIDSSRQRISLSMRDVE 372


>gi|262364253|gb|ACY60810.1| hypothetical protein YPD8_0120 [Yersinia pestis D182038]
          Length = 506

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 367 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 426

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 427 KRIALTMRLDEQ 438


>gi|297170836|gb|ADI21855.1| hypothetical protein [uncultured verrucomicrobium HF0130_25O04]
          Length = 195

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG+V +V  +GAFV      DGLVHISQ+S +R+ K  D + EGD V  +++  D   
Sbjct: 83  VIKGKVXRVAGYGAFVELDHDIDGLVHISQISEDRIEKIKDYLNEGDEVSARVIKIDKEX 142

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 143 RXIGLSIKXAD 153


>gi|291550296|emb|CBL26558.1| Ribosomal protein S1 [Ruminococcus torques L2-14]
          Length = 358

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D +
Sbjct: 276 VGTVVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLAIGQEITAKIVDLN 335

Query: 679 D-RGKIKLSMKVVDQNTGK 696
           +   KI LSMK ++ +  +
Sbjct: 336 EAEKKISLSMKALEADNAE 354



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAFV   G  DGL+HIS++S  RV     V   GDT+ V + D  D  KI
Sbjct: 198 EGTVKNVTDFGAFVDLGGV-DGLLHISEMSWGRVDNPKKVFHVGDTLKVLVKDIHDT-KI 255

Query: 684 KLSMKVVDQN 693
            LS+K  + N
Sbjct: 256 ALSLKFPETN 265


>gi|315221406|ref|ZP_07863327.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
 gi|315189525|gb|EFU23219.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
          Length = 709

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ ++ +  +G V  V+DFGAFV      DGL+HIS+LS   V   S VV  
Sbjct: 622 RQDVLDIKDL-QIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSNSYVKHPSQVVSV 680

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  LD  +R K+ LS+
Sbjct: 681 GDLVTVWVDKLDI-EREKVNLSL 702


>gi|288905182|ref|YP_003430404.1| 30S ribosomal protein S1 homolog [Streptococcus gallolyticus UCN34]
 gi|306831252|ref|ZP_07464412.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978156|ref|YP_004287872.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731908|emb|CBI13473.1| 30S ribosomal protein S1 homolog [Streptococcus gallolyticus UCN34]
 gi|304426488|gb|EFM29600.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178084|emb|CBZ48128.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 398

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+LD +   
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVNVKVLDVNAAA 340

Query: 682 -KIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I KG+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 192 EEGAIVKGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSI 250

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 251 DEEAGRVSLSLK 262


>gi|322420516|ref|YP_004199739.1| Tex-like protein [Geobacter sp. M18]
 gi|320126903|gb|ADW14463.1| Tex-like protein [Geobacter sp. M18]
          Length = 756

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + +I D+ E   I +G V  V  FGAFV     +DGLVH+SQLS   +   +D VK 
Sbjct: 635 RDDVVTIADLKE-GMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRYMKDPNDAVKV 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G+ V VK+L  D +R +I LS+K
Sbjct: 694 GEIVKVKVLSADPERKRISLSIK 716


>gi|283798764|ref|ZP_06347917.1| protein YhgF [Clostridium sp. M62/1]
 gi|291073448|gb|EFE10812.1| protein YhgF [Clostridium sp. M62/1]
          Length = 713

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHISQ++   +    +VV  GD V VK+LD + ++
Sbjct: 645 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVEVKVLDVNLEK 704

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 705 KRIGLTMKL 713


>gi|28493260|ref|NP_787421.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
 gi|28476301|gb|AAO44390.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
          Length = 473

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G V KVM+FG FV      +GL H+S+L    +  T DV   GD V+VK++D D
Sbjct: 286 IGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLESTEDVFSPGDEVFVKIVDID 345

Query: 679 -DRGKIKLSMK 688
            D  +I LS+K
Sbjct: 346 IDSRRISLSLK 356



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  ++ FGAFV   G  DGLVHIS++S + V + S+V+K G+ V V++L+ D +
Sbjct: 203 QVRKGTVSSIVSFGAFVDLGGI-DGLVHISEISWKHVTQPSEVLKVGEEVTVEILEVDSE 261

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS++   ++
Sbjct: 262 RHRVSLSLRATQED 275


>gi|332306876|ref|YP_004434727.1| ribosomal protein S1 [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174205|gb|AEE23459.1| ribosomal protein S1 [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 579

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 8/127 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   V +  AK N      V ++  ++ E E++ E  + + ++ E +++
Sbjct: 163 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERDQLLANLEEGHEV 217

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD ++ 
Sbjct: 218 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKS 275

Query: 682 KIKLSMK 688
           ++ L MK
Sbjct: 276 RVSLGMK 282



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G V  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 297 PEGSKL-SGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVL 355

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 356 EIDEERRRISLGLKQCKPN 374



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S  +  +  D V+E   GD +   +L  D +R
Sbjct: 391 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKTGE--DAVREYKKGDEISAVVLQVDPER 448

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 449 ERISLGVKQIEED 461


>gi|255535011|ref|YP_003095382.1| 30S ribosomal protein S1 [Flavobacteriaceae bacterium 3519-10]
 gi|255341207|gb|ACU07320.1| SSU ribosomal protein S1p [Flavobacteriaceae bacterium 3519-10]
          Length = 597

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA  E   R I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 197 VVVSHKALIEADLEGQKREIIGQLEKGQVLEGTVKNITSYGVFVDLGGV-DGLIHITDLS 255

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             RV   S+++ +G+TV V +LDFDD + +I+L MK
Sbjct: 256 WSRVNHPSEILSDGETVKVVILDFDDEKTRIQLGMK 291



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V  ++L  D  DR
Sbjct: 312 KGKVVVLADYGAFVEVAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREDR 371

Query: 681 GKIKLSMKVVDQN 693
            KI L MK + Q+
Sbjct: 372 -KISLGMKQLSQD 383


>gi|257054903|ref|YP_003132735.1| transcriptional accessory protein [Saccharomonospora viridis DSM
           43017]
 gi|256584775|gb|ACU95908.1| transcriptional accessory protein [Saccharomonospora viridis DSM
           43017]
          Length = 775

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVH+S +S   V+   DVVK GD V VK+LD D  R +
Sbjct: 651 EGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHRYVSDPRDVVKPGDVVTVKVLDVDVPRKR 710

Query: 683 IKLSMKVVD 691
           I L++++ D
Sbjct: 711 ISLTLRLDD 719


>gi|238783100|ref|ZP_04627126.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
           43970]
 gi|238715896|gb|EEQ07882.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
           43970]
          Length = 788

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|312869842|ref|ZP_07729983.1| S1 RNA binding domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094621|gb|EFQ52924.1| S1 RNA binding domain protein [Lactobacillus oris PB013-T2-3]
          Length = 165

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 41/73 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHISQ+S + +    DV+  GDTV  K+   
Sbjct: 4   EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDTVTAKVTRV 63

Query: 678 DDRGKIKLSMKVV 690
            D GKI LSMK  
Sbjct: 64  GDDGKIALSMKAA 76


>gi|292492661|ref|YP_003528100.1| ribosomal protein S1 [Nitrosococcus halophilus Nc4]
 gi|291581256|gb|ADE15713.1| ribosomal protein S1 [Nitrosococcus halophilus Nc4]
          Length = 560

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE  A RE + S     E  K  KG V  + D+GAFV   G  DGL+HI+ +S +R+   
Sbjct: 176 AEYSAEREALLSSL---EEGKTVKGIVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 231

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S+VV  GD + V++L FD +R ++ L +K + ++  K +
Sbjct: 232 SEVVNIGDEITVQVLKFDKERQRVSLGLKQMGEDPWKDL 270



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  V D+G FV      +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 275 PDNTRLF-GKVTNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKIVQVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK    N
Sbjct: 334 DIDEERRRISLGMKQCQPN 352



 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG FV   G  DGLVH+S +S      +T    K+GD V   +L  D +R +
Sbjct: 369 GEIKSITDFGIFVGLEGGIDGLVHLSDISWSASGEETIRDYKKGDQVEAVVLAIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGIKQLEED 439


>gi|293393397|ref|ZP_06637709.1| YhgF like protein [Serratia odorifera DSM 4582]
 gi|291424134|gb|EFE97351.1| YhgF like protein [Serratia odorifera DSM 4582]
          Length = 807

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHSVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ +Q    P
Sbjct: 712 KRIALTMRLDEQPGEGP 728


>gi|288933208|ref|YP_003437267.1| Tex-like protein protein-like protein [Klebsiella variicola At-22]
 gi|288887937|gb|ADC56255.1| Tex-like protein protein-like protein [Klebsiella variicola At-22]
          Length = 776

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|219848105|ref|YP_002462538.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542364|gb|ACL24102.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 500

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G+V  +  +G FV     RDGLVHIS++S  R+   S++V+ GDT  VWVK +D D R 
Sbjct: 107 EGKVTSIALYGIFVDVGVGRDGLVHISEMSDRRIDTPSELVQIGDTVKVWVKSVDLDAR- 165

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 166 RISLTM 171



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  RE + S+    +V +I +G +     FGAF      +DGL+HIS+LS  RV K  D 
Sbjct: 197 EVDREKLASL----KVGEIVEGVITGFAPFGAFADIGVGKDGLIHISELSEGRVEKPEDA 252

Query: 664 VKEGDTVWVKLLDFDDRG-KIKLSMK 688
           VK G+    K+L+ D  G +I LS++
Sbjct: 253 VKVGERYQFKVLEIDGEGTRISLSLR 278



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  +  FGAFV     RDGLVHIS L+  RVAK  DVVK GD V VK+L  
Sbjct: 290 EPGQIIEGTVSGIATFGAFVDIGVGRDGLVHISALAPHRVAKVEDVVKVGDKVKVKVLGV 349

Query: 678 DDRGK-IKLSMKVVDQN 693
           D + K I L+M++ ++ 
Sbjct: 350 DPQSKRISLTMRLEEEQ 366


>gi|113972136|ref|YP_735929.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-4]
 gi|113886820|gb|ABI40872.1| RNA binding S1 domain protein [Shewanella sp. MR-4]
          Length = 779

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++
Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708

Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696
            D +R +I LSM++   +DQ+  +
Sbjct: 709 VDVERRRIGLSMRLDEAIDQSKAQ 732


>gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus
           scrofa]
          Length = 243

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E       
Sbjct: 6   LLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEASGRAPL 64

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                R      Y+    +TGE  R     R+    G   R+A    +         + I
Sbjct: 65  ---PDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDI 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ ++DG    A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+ 
Sbjct: 122 YVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEEA 177

Query: 486 LG--HMDFKVAGTDSGITAMQMDMKI 509
            G   +   +      I  ++MD ++
Sbjct: 178 AGGPQLALALLPASGQIALLEMDARL 203


>gi|238792873|ref|ZP_04636503.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
           29909]
 gi|238727727|gb|EEQ19251.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
           29909]
          Length = 792

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|312958364|ref|ZP_07772885.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
 gi|311287428|gb|EFQ65988.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
          Length = 774

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVDQ 692
            ++ LSM++ D+
Sbjct: 711 KRVGLSMRMSDE 722


>gi|296129804|ref|YP_003637054.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
          Length = 492

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD V+VK++D D
Sbjct: 296 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D D
Sbjct: 213 QVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDFD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|206576501|ref|YP_002236221.1| S1 RNA binding domain protein [Klebsiella pneumoniae 342]
 gi|206565559|gb|ACI07335.1| S1 RNA binding domain protein [Klebsiella pneumoniae 342]
          Length = 776

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|251796396|ref|YP_003011127.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
 gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 411

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V ++  FGAFV   G  DGLVH+S+LS + VA   DVV EG  V VK+L  
Sbjct: 193 QVGAQLEGTVQRLTPFGAFVDIGGI-DGLVHVSELSWQHVAHPKDVVSEGQQVTVKVLKV 251

Query: 678 DD-RGKIKLSMK 688
           D   GKI LS+K
Sbjct: 252 DPAAGKISLSIK 263



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G V +++ FGAFV      +GLVHISQ++   +A   +V+KEG  V  K+LDF+
Sbjct: 279 VGDIVTGTVRRLVTFGAFVEIAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQAKVLDFN 338

Query: 679 DRGK-IKLSMKVVDQNTGKP 697
              K + LS+K  ++   +P
Sbjct: 339 PAEKRVSLSIKETEEAPEQP 358



 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG ++K+ D  A+V      DG++ + +LS  ++   +D V+ G  V +K++  DD + K
Sbjct: 26  KGTIIKIDDNQAYVSLGYKYDGVIPVRELSAVQLDNANDAVQVGQEVELKVVSIDDEKEK 85

Query: 683 IKLSMKVVD 691
           + LS +++D
Sbjct: 86  LVLSKRLID 94


>gi|163856154|ref|YP_001630452.1| transcription accessory protein [Bordetella petrii DSM 12804]
 gi|163259882|emb|CAP42183.1| transcription accessory protein [Bordetella petrii]
          Length = 791

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V  +N +Y G V++     V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV
Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VK+L+ D  R ++ L+M++ D  T +P
Sbjct: 721 TVKVLEVDVARKRVALTMRLND--TAQP 746


>gi|109701062|gb|ABG40982.1| SSU ribosomal protein S1P [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 8/127 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   V +  AK N      V ++  ++ E E++ E  + + ++ E +++
Sbjct: 163 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERDQLLANLEEGHEV 217

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD ++ 
Sbjct: 218 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKS 275

Query: 682 KIKLSMK 688
           ++ L MK
Sbjct: 276 RVSLGMK 282



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G V  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 297 PEGSKL-SGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVL 355

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 356 EIDEERRRISLGLKQCKPN 374



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S  +  +  D V+E   GD +   +L  D +R
Sbjct: 391 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKTGE--DAVREYKKGDEISAVVLQVDPER 448

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 449 ERISLGVKQIEED 461


>gi|32471711|ref|NP_864704.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|32397082|emb|CAD72386.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|327541012|gb|EGF27567.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
          Length = 560

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           R+++ +  D  E    V  ++KG+V +  +FGAFV      +GL HIS+L+T RV++ S 
Sbjct: 423 RDLLENPWDSAESMFAVGSVHKGEVTRTAEFGAFVRLTAGVEGLCHISELATHRVSRVSS 482

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           VV  GD V VK++ FD D  K+ LS+K  
Sbjct: 483 VVNVGDEVDVKIMSFDRDSQKVGLSIKAA 511



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V DFGAFV   G  DGL+H+S+LS ER+   S+V++EG  V V++   
Sbjct: 353 EPGDILEGVVRSVRDFGAFVDV-GGLDGLIHVSKLSWERIKHPSEVIEEGQNVKVRVDKI 411

Query: 678 DDR-GKIKLSMKVVDQN 693
           D + GK+ L+ + + +N
Sbjct: 412 DKQTGKMSLTYRDLLEN 428


>gi|290512012|ref|ZP_06551380.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella
           sp. 1_1_55]
 gi|289775802|gb|EFD83802.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella
           sp. 1_1_55]
          Length = 776

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|297544051|ref|YP_003676353.1| Tex-like protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841826|gb|ADH60342.1| Tex-like protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 712

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVHIS++S   +    DVV  GD V VK+L+ D +R +I
Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVKVKVLNVDLERNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|238751149|ref|ZP_04612644.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
 gi|238710627|gb|EEQ02850.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
          Length = 793

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|114049369|ref|YP_739919.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-7]
 gi|113890811|gb|ABI44862.1| RNA binding S1 domain protein [Shewanella sp. MR-7]
          Length = 779

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++
Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708

Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696
            D +R +I LSM++   +DQ+  +
Sbjct: 709 VDVERRRIGLSMRLDEAIDQSKAQ 732


>gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 484

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     V K GD V+VK++D D
Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 353 LERRRISLSLKQANE 367



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D D
Sbjct: 210 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|326478233|gb|EGE02243.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Trichophyton equinum CBS 127.97]
          Length = 1214

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 19/120 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD                R  +  + D P + KIY G+V  + DFG    F
Sbjct: 219 RSGRNYNYDDD--------------FKRPPVSELDDRPILFKIYDGRVTGIKDFGVLPEF 264

Query: 640 ---CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
               G+  GLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 PFALGSTLGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQD-SRIGLSMKEVDQVSG 323


>gi|227552666|ref|ZP_03982715.1| RNA-binding protein [Enterococcus faecium TX1330]
 gi|257888635|ref|ZP_05668288.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257897410|ref|ZP_05677063.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257899970|ref|ZP_05679623.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|293378831|ref|ZP_06624986.1| general stress protein 13 family protein [Enterococcus faecium
           PC4.1]
 gi|293571075|ref|ZP_06682116.1| S1-type RNA-binding domain protein [Enterococcus faecium E980]
 gi|227178195|gb|EEI59167.1| RNA-binding protein [Enterococcus faecium TX1330]
 gi|257824689|gb|EEV51621.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257833975|gb|EEV60396.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257837882|gb|EEV62956.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|291608858|gb|EFF38139.1| S1-type RNA-binding domain protein [Enterococcus faecium E980]
 gi|292642372|gb|EFF60527.1| general stress protein 13 family protein [Enterococcus faecium
           PC4.1]
          Length = 156

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK++  
Sbjct: 4   EVGAKLQGKVSGITNFGAFIDLGAGKTGLVHISEVSNGYVKDIHDVLSVGDEVTVKVISV 63

Query: 678 DDRGKIKLSMK 688
           +D GKI LS++
Sbjct: 64  NDDGKIGLSIR 74


>gi|83590176|ref|YP_430185.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Moorella thermoacetica ATCC 39073]
 gi|83573090|gb|ABC19642.1| hydroxymethylbutenyl pyrophosphate reductase [Moorella
           thermoacetica ATCC 39073]
          Length = 736

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D    K+  S  A +E   E  R  T +  EV ++ KG V ++ +FGAFV   G  DGL+
Sbjct: 506 DRSKNKVVLSRKAILEEEYEKQRQATWNSLEVGQVRKGIVRRLTNFGAFVDLGGV-DGLL 564

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           H+S++S  RV    D + EG  + VK+L  D + GK+ L  K
Sbjct: 565 HVSEISWGRVEHPRDALSEGQEIEVKILGIDREEGKVSLGRK 606



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+++++  FGAFV      +GLVHISQL+   V K  DVV  GD + VK+L  D
Sbjct: 622 VGTIVEGKILRLAPFGAFVEVEPGIEGLVHISQLADRHVDKPEDVVSIGDIIPVKVLGVD 681

Query: 679 DRG-KIKLSMK 688
            +  ++ LS++
Sbjct: 682 QQAQRMSLSLR 692


>gi|222152742|ref|YP_002561919.1| transcription accessory protein [Streptococcus uberis 0140J]
 gi|222113555|emb|CAR41362.1| putative transcription accessory protein [Streptococcus uberis
           0140J]
          Length = 710

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S V+  
Sbjct: 623 RQDILDLKDL-EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVLSV 681

Query: 667 GD--TVWVKLLDFDDRGKIKLSM 687
           GD  TVWV  +D  DR K+ LS+
Sbjct: 682 GDLVTVWVSKIDL-DRHKVNLSL 703


>gi|32035056|ref|ZP_00135122.1| COG2183: Transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 727

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ 
Sbjct: 656 KVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKVLEV 715

Query: 678 D-DRGKIKLSMK 688
           D  R +I L+M+
Sbjct: 716 DVQRKRIALTMR 727


>gi|125718044|ref|YP_001035177.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK36]
 gi|125497961|gb|ABN44627.1| 30S ribosomal protein S1, putative [Streptococcus sanguinis SK36]
          Length = 401

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|238758693|ref|ZP_04619867.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
 gi|238702990|gb|EEP95533.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
          Length = 788

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|83649058|ref|YP_437493.1| transcriptional accessory protein [Hahella chejuensis KCTC 2396]
 gi|83637101|gb|ABC33068.1| Transcriptional accessory protein [Hahella chejuensis KCTC 2396]
          Length = 775

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISALSHKFVKDPREVVKAGDIVKVKVIEVDAAR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 713 KRIALTMRLDDE 724


>gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297]
 gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297]
          Length = 239

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 23/197 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R+++ Q    +   GS L   GDTQ I   ++    D      + G  R
Sbjct: 1   MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASV----DSGVPRFMKGEGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++  A   ++ G     GRL  R++   +        T+ I  
Sbjct: 57  GWVTAEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GV---------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA  G+         PI   VA +++G+ +D      +
Sbjct: 117 DVIQADGGTRTASITGAFVALSDAINGMLAEGTLKKNPIKHNVAAVSVGIWQD----TAV 172

Query: 477 SDISGDEDHLGHMDFKV 493
            D+   ED     D  V
Sbjct: 173 LDLDYAEDSTAETDLNV 189


>gi|238765201|ref|ZP_04626132.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
           33638]
 gi|238696584|gb|EEP89370.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
           33638]
          Length = 792

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|197286718|ref|YP_002152590.1| transcription accessory protein [Proteus mirabilis HI4320]
 gi|194684205|emb|CAR45692.1| putative transcription accessory protein [Proteus mirabilis HI4320]
          Length = 777

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKTGDIVKVKVLEVDLPR 711

Query: 681 GKIKLSMKV 689
            +I L+M++
Sbjct: 712 KRIALTMRL 720


>gi|152972285|ref|YP_001337431.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262045243|ref|ZP_06018269.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|150957134|gb|ABR79164.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259037453|gb|EEW38698.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 776

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|68249168|ref|YP_248280.1| transcriptional accessory protein [Haemophilus influenzae 86-028NP]
 gi|68057367|gb|AAX87620.1| predicted transcriptional accessory protein [Haemophilus influenzae
           86-028NP]
          Length = 770

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 24/167 (14%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD---QNTGK 696
            + V     VVK G+ V VK+L+ D  R +I L+M++ +   +N GK
Sbjct: 685 DKFVEDPLQVVKTGNIVKVKVLEVDVLRKRIALTMRLDESAVKNDGK 731


>gi|264677719|ref|YP_003277625.1| truncated RNA binding S1 [Comamonas testosteroni CNB-2]
 gi|262208231|gb|ACY32329.1| truncated RNA binding S1 [Comamonas testosteroni CNB-2]
          Length = 387

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ E     +G V  V  FGAFV     +DGLVH+SQ+S + +    +VVK G  
Sbjct: 249 VEDIKDLKE-GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQI 307

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V VK+L+ D DR +I L+MK+
Sbjct: 308 VKVKVLEVDVDRKRISLTMKL 328


>gi|238896874|ref|YP_002921619.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae NTUH-K2044]
 gi|238549201|dbj|BAH65552.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 776

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|116873380|ref|YP_850161.1| 30S ribosomal protein S1 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742258|emb|CAK21382.1| 30S ribosomal protein S1 [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 381

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+VV+++ FGAFV      +GLVHISQ+S + +    +V+ EG T+ VK+L+ +
Sbjct: 272 VGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGQTIEVKVLEVN 331

Query: 679 DRGKIKLSMKVVD 691
           +  K +LS+ + D
Sbjct: 332 EADK-RLSLSIKD 343



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGVVERLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   +V++EG  V VK++  D +  +I LS+K
Sbjct: 216 ISQISYQHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 256


>gi|330012471|ref|ZP_08307385.1| Tex-like protein [Klebsiella sp. MS 92-3]
 gi|328533822|gb|EGF60501.1| Tex-like protein [Klebsiella sp. MS 92-3]
          Length = 776

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  R
Sbjct: 653 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|301632867|ref|XP_002945501.1| PREDICTED: protein tex-like [Xenopus (Silurana) tropicalis]
          Length = 792

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQLS + V+   +VVK G
Sbjct: 661 EGVEDIADLKE-GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVSDAREVVKTG 719

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
             V VK+L+ D  R +I L+M++
Sbjct: 720 AIVKVKVLEVDAARKRISLTMRL 742


>gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
 gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
          Length = 239

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R +      L+   GS L   GDT+ I   ++    +E+    L G  +
Sbjct: 1   MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASV----EEKVPPFLRGENK 56

Query: 372 NDFMMHYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT ++  M   G  S R     RL  RA+  V+   A    T+ +  +
Sbjct: 57  GWVTAEYAMLPRAT-QIRTMRERGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCD 115

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + GS +A       L+ AG    VP++  +A  ++G+V   DD ++L 
Sbjct: 116 VVQADGGTRTAAISGSFVALYLALSKLVAAGTLSEVPVTDYLAATSIGIV---DDKLML- 171

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +D  V  T SG I  +Q   +    S   M   +  A +G   I++   
Sbjct: 172 DLAFSEDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQK 231

Query: 537 KVL 539
           ++L
Sbjct: 232 RLL 234


>gi|90409187|ref|ZP_01217301.1| hypothetical protein PCNPT3_07710 [Psychromonas sp. CNPT3]
 gi|90309713|gb|EAS37884.1| hypothetical protein PCNPT3_07710 [Psychromonas sp. CNPT3]
          Length = 723

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 9/86 (10%)

Query: 618 EVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           E+NKI         +G +  V  FGAFV     +DGL+H+SQL+ + V    +VVK G  
Sbjct: 638 EINKISDLYTDMEIQGVITNVTSFGAFVDIGVHQDGLIHLSQLANKFVKDPFEVVKTGQI 697

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNT 694
           V V++L  D +R +I LS+++ D N 
Sbjct: 698 VQVRVLSVDSERKRISLSLRLQDHNA 723


>gi|239983527|ref|ZP_04706051.1| transcriptional accessory protein [Streptomyces albus J1074]
 gi|291455345|ref|ZP_06594735.1| transcriptional accessory protein [Streptomyces albus J1074]
 gi|291358294|gb|EFE85196.1| transcriptional accessory protein [Streptomyces albus J1074]
          Length = 807

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+ E   + +G V  V  FGAFV     +DGLVH+S +S   V    +VVK 
Sbjct: 643 REGVEKLSDL-EAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVKDPREVVKP 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+++ D  R +I L++++ D+
Sbjct: 702 GDIVKVKVMEVDAARKRISLTLRLDDE 728


>gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1-like protein [Streptosporangium roseum DSM
           43021]
 gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM
           43021]
          Length = 500

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ GD ++VK++D 
Sbjct: 295 QIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKIIDI 354

Query: 678 D-DRGKIKLSMKVVDQN-TGKPI 698
           D +R +I LS+K  +++ TG  I
Sbjct: 355 DLERRRISLSLKQANESATGADI 377



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNTLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D +R ++ LS+K   ++
Sbjct: 265 VLDVDMERERVSLSLKATQED 285


>gi|319944389|ref|ZP_08018663.1| YhgF like protein [Lautropia mirabilis ATCC 51599]
 gi|319742350|gb|EFV94763.1| YhgF like protein [Lautropia mirabilis ATCC 51599]
          Length = 790

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD V VK+L+ D  R +
Sbjct: 664 EGVVTNVANFGAFVDIGVHQDGLVHISALSDRFVKDPHEVVKTGDVVKVKVLEVDVRRQR 723

Query: 683 IKLSMKVVDQ 692
           + L+M++ D+
Sbjct: 724 VALTMRMSDE 733


>gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
 gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
          Length = 250

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 24/253 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R    +R I  +  + +   GS L   GDT+ +   T+    +E+    L G + 
Sbjct: 1   MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATV----EEKVPPFLRGKRH 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  +  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWINAEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  LAL+ A             PI + +A +++G  K G + ++ 
Sbjct: 117 DVLQADGGTRTAAITGGFLALVLAVDGLIQSGKLTDTPIKEGIAAVSVG--KVGTELLL- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +  T SG I  +Q   +    S   M+  L+  ++G   +L+  
Sbjct: 174 -DLCYEEDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELLHAA 232

Query: 536 SKVLSESRLQLGE 548
            + L  S   +GE
Sbjct: 233 EQSLGASWWYVGE 245


>gi|326563237|gb|EGE13504.1| RNA binding protein S1 [Moraxella catarrhalis 46P47B1]
 gi|326569274|gb|EGE19335.1| RNA binding protein S1 [Moraxella catarrhalis BC7]
 gi|326571951|gb|EGE21956.1| RNA binding protein S1 [Moraxella catarrhalis BC8]
          Length = 788

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V    +G V  V  FG FV     +DGLVHIS+LS   VA  +DVVK 
Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKP 705

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
            D V V+++  D+ RG+I  SMK
Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728


>gi|326562258|gb|EGE12584.1| RNA binding protein S1 [Moraxella catarrhalis 103P14B1]
 gi|326575461|gb|EGE25386.1| RNA binding protein S1 [Moraxella catarrhalis 101P30B1]
          Length = 788

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V    +G V  V  FG FV     +DGLVHIS+LS   VA  +DVVK 
Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKP 705

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
            D V V+++  D+ RG+I  SMK
Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728


>gi|296112291|ref|YP_003626229.1| RNA binding protein S1 [Moraxella catarrhalis RH4]
 gi|295919984|gb|ADG60335.1| RNA binding protein S1 [Moraxella catarrhalis RH4]
          Length = 788

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V    +G V  V  FG FV     +DGLVHIS+LS   VA  +DVVK 
Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKP 705

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
            D V V+++  D+ RG+I  SMK
Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728


>gi|242371560|ref|ZP_04817134.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242350712|gb|EES42313.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 716

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVH+S+LS + V    ++V  GD V V +LD D ++GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMEIVSVGDIVDVWILDIDENKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|162382312|ref|YP_662036.2| 30S ribosomal protein S1 [Pseudoalteromonas atlantica T6c]
          Length = 557

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 8/127 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   V +  AK N      V ++  ++ E E++ E  + + ++ E +++
Sbjct: 141 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERDQLLANLEEGHEV 195

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD ++ 
Sbjct: 196 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKS 253

Query: 682 KIKLSMK 688
           ++ L MK
Sbjct: 254 RVSLGMK 260



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G V  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-SGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S  +  +  D V+E   GD +   +L  D +R
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKTGE--DAVREYKKGDEISAVVLQVDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 427 ERISLGVKQIEED 439


>gi|24376102|ref|NP_720145.1| hypothetical protein SO_4629 [Shewanella oneidensis MR-1]
 gi|24351131|gb|AAN57589.1|AE015894_9 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 784

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 6/81 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++
Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708

Query: 677 FD-DRGKIKLSMKV---VDQN 693
            D +R +I LSM++   +DQ+
Sbjct: 709 VDVERRRIGLSMRLDEAIDQS 729


>gi|238797303|ref|ZP_04640804.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
           43969]
 gi|238718940|gb|EEQ10755.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
           43969]
          Length = 788

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|325694460|gb|EGD36369.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK150]
 gi|332360264|gb|EGJ38077.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK355]
 gi|332360840|gb|EGJ38646.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK49]
          Length = 400

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|324994814|gb|EGC26727.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678]
 gi|327461023|gb|EGF07356.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1057]
 gi|327463129|gb|EGF09450.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|295097017|emb|CBK86107.1| Transcriptional accessory protein [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 776

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|226324699|ref|ZP_03800217.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758]
 gi|225207147|gb|EEG89501.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758]
          Length = 359

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D +
Sbjct: 276 VGTVVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLSVGQEITAKIVDLN 335

Query: 679 DR-GKIKLSMKVVDQ 692
           +   KI LSMK ++ 
Sbjct: 336 EADKKISLSMKALEN 350



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  V DFGAF+   G  DGL+HIS++S  RV     V   G+T+ V + D 
Sbjct: 192 KVGDVIEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVDNPKKVFTVGETLKVLVKDI 250

Query: 678 DDRGKIKLSMKVVDQN 693
            D  K+ LS+K  + N
Sbjct: 251 HDT-KVALSLKFPETN 265


>gi|168183009|ref|ZP_02617673.1| putative 30S ribosomal protein S1 [Clostridium botulinum Bf]
 gi|182673872|gb|EDT85833.1| putative 30S ribosomal protein S1 [Clostridium botulinum Bf]
          Length = 387

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V +
Sbjct: 193 NSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251

Query: 675 LDFDDR-GKIKLSMKVVDQN 693
           LDFD +  KI LS+K V +N
Sbjct: 252 LDFDKKTKKIALSLKDVKKN 271



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G VVK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ +
Sbjct: 282 VGSVVEGIVVKLLNFGAFVEVEKGIEGLVHISEIADENIAKPSEKLNIGDKVKVKVLEVN 341

Query: 679 -DRGKIKLSMK 688
            D  ++ LS+K
Sbjct: 342 SDEKRMSLSIK 352


>gi|34496992|ref|NP_901207.1| transcriptional accessory protein [Chromobacterium violaceum ATCC
           12472]
 gi|34102848|gb|AAQ59212.1| probable transcriptional accessory protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 770

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS + +     VVK GD V VK+L+ D  R
Sbjct: 654 VLEGVVTNVANFGAFVDIGVHQDGLVHISALSNKFIDDPRKVVKAGDVVKVKVLEVDVAR 713

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 714 KRIALTMRLDDE 725


>gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168]
 gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168]
          Length = 246

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 25/206 (12%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R+DGR ++ +RD+       +   GS L   GDT+ I   ++    +E     L G 
Sbjct: 5   NNLRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASV----EESVPPFLRGQ 60

Query: 370 QRNDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                   Y+ LP +T      EV+R G  S R     RL  R++  V+        T+ 
Sbjct: 61  NTGWLTAEYSLLPRSTHSRTIREVAR-GRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIW 119

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +AL+DA       GV    P++  +A  ++G+V DG+  
Sbjct: 120 VDCDVIQADGGTRTASITGAYVALVDAINYLIEEGVLEESPLNSFMAATSVGVV-DGE-- 176

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            +L D+  +ED    +D  +  T+ G
Sbjct: 177 -MLLDLCYEEDFQAQVDMNIVMTEDG 201


>gi|296105102|ref|YP_003615248.1| putative transcription accessory protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059561|gb|ADF64299.1| putative transcription accessory protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 776

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|242237776|ref|YP_002985957.1| RNA binding S1 domain protein [Dickeya dadantii Ech703]
 gi|242129833|gb|ACS84135.1| RNA binding S1 domain protein [Dickeya dadantii Ech703]
          Length = 775

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVLEVDLPR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
 gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
          Length = 493

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E  +  +RS      +  ++ +G V  +++FGAFV   G  DGLVH+S+LS + 
Sbjct: 184 SRRAYLEETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 242

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 243 IDHPSEVVEVGQKVSVEVLDVDMDRERVSLSLKATQED 280



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV     V+VK++D D
Sbjct: 291 IGEVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDID 350

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 351 LERRRISLSLK 361


>gi|115447329|ref|NP_001047444.1| Os02g0617700 [Oryza sativa Japonica Group]
 gi|113536975|dbj|BAF09358.1| Os02g0617700 [Oryza sativa Japonica Group]
          Length = 322

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 48/73 (65%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV + YKG V  + ++GAFV F G + GL+HIS+LS ++V+K SDVV  G  + +  +  
Sbjct: 27  EVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQ 86

Query: 678 DDRGKIKLSMKVV 690
           D RG IKLS+K  
Sbjct: 87  DLRGNIKLSLKAT 99


>gi|324993865|gb|EGC25784.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|323135904|ref|ZP_08070987.1| Tex-like protein-like [Methylocystis sp. ATCC 49242]
 gi|322398995|gb|EFY01514.1| Tex-like protein-like [Methylocystis sp. ATCC 49242]
          Length = 770

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHIS LS E V     VVK GD V VK+++ D  R +
Sbjct: 651 EGVVTNVAAFGAFVDIGVHQDGLVHISALSKEFVKDPRSVVKPGDIVKVKVMEVDVPRKR 710

Query: 683 IKLSMKVVD 691
           I LSM++ D
Sbjct: 711 ISLSMRLDD 719


>gi|238882910|gb|EEQ46548.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           albicans WO-1]
          Length = 996

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKL 674
           P+V KIY G V  V ++GAF+   G   GL HISQ+S +  RV  T +V+     V+VK+
Sbjct: 73  PQVGKIYSGVVQSVTNYGAFIKIEGT-SGLCHISQMSFDGSRVEST-NVLAPNQKVFVKV 130

Query: 675 LDFDDRG-KIKLSMKVVDQNTG 695
           ++      +I LSM+ ++QNTG
Sbjct: 131 INIQTHANRISLSMRGINQNTG 152


>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
 gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
          Length = 487

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ GD V V++L+ D +
Sbjct: 208 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLEVDLN 266

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 267 RERVSLSLKATQED 280



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L++  +     +V   + V VK++D D
Sbjct: 291 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  D++
Sbjct: 351 LERRRISLSLKQADED 366


>gi|170758634|ref|YP_001787128.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405623|gb|ACA54034.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 638

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 587 IDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           I D    KI  S    ++  R E I    +  E + + +G+V +  DFGAF+   G  DG
Sbjct: 445 IKDRYRTKIVGSRRNILKTIRNEHIEETWNSLEKDTVVEGEVKRFTDFGAFIEINGV-DG 503

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           L+H+S++S  RV K  D +K GD + V +LD D +  K+ LS+K + ++  K +
Sbjct: 504 LLHVSEISWGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 557



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRINKPEEELTLGKEVKAKILEVNSVEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|325687255|gb|EGD29277.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|223995143|ref|XP_002287255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976371|gb|EED94698.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 398

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 11/99 (11%)

Query: 610 IRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGAR---------DGLVHISQLSTERVAK 659
           I++I+D   + +K   G+VV  + FGAFV F  A+         DGLVHIS L+  R A 
Sbjct: 245 IKAISDKGFDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTAN 304

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            SDV   GD V V++   + + G+I LSM   +Q    P
Sbjct: 305 VSDVAAVGDKVSVRVRSVEPEAGRISLSMITKEQEEAAP 343



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    +  V  +  +GAF+      D LVH+S+LS + VA   DVVK G+ + V+++  
Sbjct: 142 EIGASVEATVKTITAYGAFLDIGAKSDALVHVSRLSDDFVANVEDVVKAGEKITVRIVSV 201

Query: 678 D-DRGKIKLSMK 688
           D ++ +I ++M+
Sbjct: 202 DTEKNQIAVTMR 213


>gi|241663192|ref|YP_002981552.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12D]
 gi|240865219|gb|ACS62880.1| RNA binding S1 domain protein [Ralstonia pickettii 12D]
          Length = 788

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF++    +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 673 VLEGVVTNVAAFGAFINIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 732

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 733 NRIGLTMRLSDE 744


>gi|325694859|gb|EGD36764.1| S1 RNA binding domain protein [Streptococcus sanguinis SK150]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|323351224|ref|ZP_08086880.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
 gi|322122448|gb|EFX94159.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|317494412|ref|ZP_07952826.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917662|gb|EFV39007.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 778

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDMQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|270291222|ref|ZP_06197445.1| transcription accessory protein [Pediococcus acidilactici 7_4]
 gi|270280618|gb|EFA26453.1| transcription accessory protein [Pediococcus acidilactici 7_4]
          Length = 724

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L    V   SDVV  GD  TVWV+ +D   R 
Sbjct: 654 QGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVESVD-TKRS 712

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 713 RIQLTM 718


>gi|268608950|ref|ZP_06142677.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Ruminococcus flavefaciens FD-1]
          Length = 657

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I K  +V +  FGAF       DGL+HISQ++  +V    DV+  GD V VK++D 
Sbjct: 567 KVGDIVKATIVSITSFGAFAQIIDGVDGLIHISQIADRKVENVKDVLSVGDEVDVKIIDI 626

Query: 678 D-DRGKIKLSMKVV 690
           D D  +I +SM+ +
Sbjct: 627 DYDSKRISISMRAL 640



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%)

Query: 590 DGTVKIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +G  K A  S+  ++ A+  E      +  EV   Y G+V  +  FGAFV   G  DG+V
Sbjct: 452 EGGRKRAVGSIKAVQNAKKAEAQAKFWETAEVGATYTGKVKSLTSFGAFVDL-GGIDGMV 510

Query: 648 HISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSMKVVDQN 693
           HIS+LS +R+   S+VV  GDT  V++K LD  +  +I L  K  + N
Sbjct: 511 HISELSWKRIKHPSEVVNVGDTLEVYIKELD-KEANRISLGYKKTEDN 557


>gi|302555511|ref|ZP_07307853.1| transcriptional accessory protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302473129|gb|EFL36222.1| transcriptional accessory protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 794

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  R
Sbjct: 658 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDVDIPR 717

Query: 681 GKIKLSMKVVDQ 692
            +I L++++ D+
Sbjct: 718 KRISLTLRLDDE 729


>gi|117922444|ref|YP_871636.1| RNA-binding S1 domain-containing protein [Shewanella sp. ANA-3]
 gi|117614776|gb|ABK50230.1| RNA binding S1 domain protein [Shewanella sp. ANA-3]
          Length = 779

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 6/81 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++
Sbjct: 651 PEM--ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVME 708

Query: 677 FD-DRGKIKLSMKV---VDQN 693
            D +R +I LSM++   +DQ+
Sbjct: 709 VDVERRRIGLSMRLDEAIDQS 729


>gi|327490297|gb|EGF22085.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|297624806|ref|YP_003706240.1| RNA binding S1 domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297165986|gb|ADI15697.1| RNA binding S1 domain protein [Truepera radiovictrix DSM 17093]
          Length = 705

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 3/97 (3%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I+  S+ E E A +   ++  + E     +G+VV++ DFGAFV+  G  DGLVH S++
Sbjct: 276 VIISRRSILEEELAEQKAETLKKL-EPGARLEGEVVEITDFGAFVNLGGI-DGLVHRSEI 333

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  R     +V++ G  V V++LD D +R +I LSMK
Sbjct: 334 THGRFNHPREVLEVGQKVKVEVLDMDLERERINLSMK 370



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  +  FGAFV      +GL+H+S++S T+RV    ++++EG  V   +L  D  + +
Sbjct: 392 GKVTNLTPFGAFVEIEEGLEGLIHVSEMSWTKRVRHPKELLEEGQEVEAMILKIDVQQQR 451

Query: 683 IKLSMK 688
           I L M+
Sbjct: 452 ISLGMR 457



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G +  + DFG F+      +GLVHIS+L+ E +   S+    GD +   +L+ D
Sbjct: 479 GPITGLTDFGVFMEIEEGIEGLVHISELAHEHIEDISEHFSRGDEITAVILNID 532


>gi|257416081|ref|ZP_05593075.1| SSU ribosomal protein S1P [Enterococcus faecalis AR01/DG]
 gi|257157909|gb|EEU87869.1| SSU ribosomal protein S1P [Enterococcus faecalis ARO1/DG]
          Length = 403

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAF+   G  DGLVH+S+++ + V K SD +  G+ V VK+L  + + 
Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 266 GRISLSIK 273



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + + 
Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351

Query: 681 GKIKLSMKVVD 691
            +I LS+K ++
Sbjct: 352 HRIALSIKALE 362


>gi|296121873|ref|YP_003629651.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776]
 gi|296014213|gb|ADG67452.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776]
          Length = 597

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 603 IEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           IE  RE ++   + D+ E  +I KG V  + DFGAFV   G  DGL+HI+ +S  R+   
Sbjct: 201 IEEQREKMKKTLLADLKE-GEIRKGTVKNIADFGAFVDLGGI-DGLLHITDMSWGRIGHP 258

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S++VK  D V V +L  D DR KI L +K  D++
Sbjct: 259 SEMVKIDDEVEVMILHIDRDREKIALGLKQKDKS 292



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           T  P   KI KG VV VM +GAFV      +GLVHIS++S T+RV   S++V  GD V V
Sbjct: 299 TKYPVGTKI-KGDVVNVMSYGAFVKLEDGIEGLVHISEMSWTKRVNHPSELVNPGDEVEV 357

Query: 673 KLLDFD-DRGKIKLSMK 688
            +L+ + D+ +I L MK
Sbjct: 358 VVLNINKDKQEISLGMK 374



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I +G V  + ++GAF+      DGL+H+S +S T +++  ++++K+GD +  +++  D +
Sbjct: 393 IVEGTVRNLTNYGAFIELEEGVDGLLHVSDMSWTRKISHANEMLKKGDLLKCQVISVDEE 452

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K +D++
Sbjct: 453 RKRIALGLKQLDED 466



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-- 678
           ++  G+V K+ +FG FV      +GL+H+S+L+ +++      VK GD + V++L  D  
Sbjct: 480 EVVTGKVTKITNFGVFVELESELEGLLHVSELADQKIENPETFVKVGDELEVRILRIDPV 539

Query: 679 DRGKIKLSMK 688
           DR KI LS K
Sbjct: 540 DR-KIGLSRK 548


>gi|237794446|ref|YP_002861998.1| ribosomal protein S1 [Clostridium botulinum Ba4 str. 657]
 gi|229261852|gb|ACQ52885.1| ribosomal protein S1 [Clostridium botulinum Ba4 str. 657]
          Length = 387

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V +
Sbjct: 193 NSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251

Query: 675 LDFDDR-GKIKLSMKVVDQN 693
           LDFD +  KI LS+K V +N
Sbjct: 252 LDFDKKTKKIALSLKDVKKN 271



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G VVK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ +
Sbjct: 282 VGSVVEGIVVKLLNFGAFVEVEKGIEGLVHISEIADENIAKPSEKLNIGDKVKVKVLEVN 341

Query: 679 -DRGKIKLSMK 688
            D  ++ LS+K
Sbjct: 342 SDEKRMSLSIK 352


>gi|195941060|ref|ZP_03086442.1| hypothetical protein EscherichcoliO157_32501 [Escherichia coli
           O157:H7 str. EC4024]
          Length = 199

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 76  VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 135

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 136 KRIALTMRLDEQ 147


>gi|332358670|gb|EGJ36493.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|329571715|gb|EGG53396.1| putative ribosomal protein S1 [Enterococcus faecalis TX1467]
          Length = 403

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAF+   G  DGLVH+S+++ + V K SD +  G+ V VK+L  + + 
Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 266 GRISLSIK 273



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + + 
Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351

Query: 681 GKIKLSMKVVD 691
            +I LS+K ++
Sbjct: 352 HRIALSIKALE 362


>gi|310640779|ref|YP_003945537.1| tex-like protein protein-like protein [Paenibacillus polymyxa SC2]
 gi|309245729|gb|ADO55296.1| Tex-like protein protein-like protein [Paenibacillus polymyxa SC2]
          Length = 753

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQL +  V    DVV  GD V V +L+ D  +G+
Sbjct: 679 QGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 738

Query: 683 IKLSMK 688
           + L+MK
Sbjct: 739 VGLTMK 744


>gi|56961881|ref|YP_173603.1| hypothetical protein ABC0099 [Bacillus clausii KSM-K16]
 gi|56908115|dbj|BAD62642.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 142

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E     +G+V  +  FGAFV   G   GLVHIS+++   V   ++++K GD V VK+++ 
Sbjct: 4   EAGSKLQGKVTGITHFGAFVELPGGSTGLVHISEVADHYVKDINELLKVGDEVTVKVVNV 63

Query: 678 DDRGKIKLSM-KVVDQNTG 695
           +  GKI LS+ K VD+  G
Sbjct: 64  EKDGKIGLSIRKAVDRPEG 82


>gi|331701918|ref|YP_004398877.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129261|gb|AEB73814.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929]
          Length = 168

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 43/76 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  + +FGAF+     R GLVHIS++S   V    DV+K GD V VK+L  
Sbjct: 4   EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDDVTVKVLKI 63

Query: 678 DDRGKIKLSMKVVDQN 693
           +   KI LS++    N
Sbjct: 64  EGNNKISLSIRKASDN 79


>gi|325696116|gb|EGD38007.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160]
 gi|328946764|gb|EGG40902.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|332367155|gb|EGJ44891.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|212212974|ref|YP_002303910.1| 30S ribosomal protein S1 [Coxiella burnetii CbuG_Q212]
 gi|212011384|gb|ACJ18765.1| SSU ribosomal protein S1P [Coxiella burnetii CbuG_Q212]
          Length = 555

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + ++ E  +I KG +  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++  RV   SD++  GD V VK+L FD D+ ++ L MK
Sbjct: 223 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 260



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN    G+V  + D+G FV      +GLVH S+L  T +    S VV+ G+ V V +L+ 
Sbjct: 276 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 335

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L +K   +N
Sbjct: 336 DEERRRISLGIKQCKRN 352



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL   +  R   +   +  E ++   G+V  + DFG F+   G  DGLVH+S +S TE  
Sbjct: 343 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 402

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            +     K+GD V   +L  D +R +I L +K   Q  G P +
Sbjct: 403 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 442


>gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
 gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
          Length = 410

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+++   +        + +G+V ++ +FGAF+   G  DGLVH+S++S + V K +DV
Sbjct: 189 EAAKKIFSELA----AGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPADV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ G  V VK+L+ D +R +I LS+K
Sbjct: 244 LEVGQEVKVKVLNVDPERERISLSIK 269



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV++ G  V VK+L+ D
Sbjct: 285 VGTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVD 344

Query: 679 -DRGKIKLSMKVVDQ 692
            +R ++ LS+K +++
Sbjct: 345 PERQRLGLSIKALEE 359


>gi|145343076|ref|XP_001416292.1| Plastid ribosomal protein S1, imported to chloroplast, small
           ribosomal subunit [Ostreococcus lucimarinus CCE9901]
 gi|144576517|gb|ABO94585.1| Plastid ribosomal protein S1, imported to chloroplast, small
           ribosomal subunit [Ostreococcus lucimarinus CCE9901]
          Length = 339

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V  V  +GAFV   G + GL+HISQ+S ER+    +V+  GD + V ++  
Sbjct: 225 EVGDVVEGMVQAVKPYGAFVDV-GGQSGLLHISQISHERIVAVENVLSPGDRIKVLVMSK 283

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++G++ LS K ++QN G
Sbjct: 284 DAEKGRLSLSTKKLEQNHG 302


>gi|125718359|ref|YP_001035492.1| transcriptional accessory ribonuclease (YqgFc, S1) [Streptococcus
           sanguinis SK36]
 gi|125498276|gb|ABN44942.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative
           [Streptococcus sanguinis SK36]
 gi|324991505|gb|EGC23438.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|72161595|ref|YP_289252.1| 30S ribosomal protein S1 [Thermobifida fusca YX]
 gi|71915327|gb|AAZ55229.1| SSU ribosomal protein S1P [Thermobifida fusca YX]
          Length = 485

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           AK+   D     +  S  A +E  +  +R +  +  +  +I KG V  +++FGAFV   G
Sbjct: 173 AKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGG 232

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++
Sbjct: 233 V-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQED 284



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  ++VK++D 
Sbjct: 294 QIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGTEIFVKIIDI 353

Query: 678 D-DRGKIKLSMKVVDQN 693
           D DR +I LS+K  +++
Sbjct: 354 DLDRRRISLSLKQANES 370


>gi|332358941|gb|EGJ36762.1| S1 RNA binding domain protein [Streptococcus sanguinis SK49]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|327474740|gb|EGF20145.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|304385510|ref|ZP_07367855.1| YhgF like protein [Pediococcus acidilactici DSM 20284]
 gi|304328717|gb|EFL95938.1| YhgF like protein [Pediococcus acidilactici DSM 20284]
          Length = 724

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L    V   SDVV  GD  TVWV+ +D   R 
Sbjct: 654 QGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVESVD-TKRS 712

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 713 RIQLTM 718


>gi|239637494|ref|ZP_04678468.1| S1 family RNA-binding protein [Staphylococcus warneri L37603]
 gi|239596939|gb|EEQ79462.1| S1 family RNA-binding protein [Staphylococcus warneri L37603]
 gi|330686090|gb|EGG97712.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU121]
          Length = 135

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSLGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS+K
Sbjct: 64  ADDGKISLSIK 74


>gi|51598056|ref|YP_072247.1| hypothetical protein YPTB3766 [Yersinia pseudotuberculosis IP
           32953]
 gi|186897256|ref|YP_001874368.1| RNA-binding S1 domain-containing protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51591338|emb|CAH23004.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186700282|gb|ACC90911.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 791

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|302328188|gb|ADL27389.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 590

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E N++ KG V  + DFGAF+   G  DGL+HI+ +S +R+   S++++ G  V V +LDF
Sbjct: 210 EKNQVRKGIVKNITDFGAFIDLGGV-DGLLHITDMSYKRINHPSEMLQLGQEVEVMVLDF 268

Query: 678 DDRG-KIKLSMKVVDQNTGKPI 698
           +D+  +I L MK +  +  K I
Sbjct: 269 NDKKERISLGMKQLKPHPWKDI 290



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  +  FGAFV      DGL+H+S +S T+++   +++VK+GD V   +L  D ++ +
Sbjct: 389 GEIRNIASFGAFVEIKEGVDGLIHVSDMSWTKKITHPNEMVKKGDKVECVVLAVDKEKRR 448

Query: 683 IKLSMK 688
           I LSMK
Sbjct: 449 ISLSMK 454



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF-DD 679
           I KG+VV + D+GAFV      +GL+H+S++S T+ V   S ++  G  V   +L   +D
Sbjct: 299 IVKGKVVSITDYGAFVELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEED 358

Query: 680 RGKIKLSMK 688
             +I L MK
Sbjct: 359 AERISLGMK 367


>gi|296117628|ref|ZP_06836212.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306]
 gi|295969359|gb|EFG82600.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306]
          Length = 749

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 4/92 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  I+D VP +  + +G V  V  FGAFV     +DGLVHIS +S + V+   +VV+
Sbjct: 627 KEGVEKISDLVPGM--VLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNKFVSDPHEVVR 684

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            G+ V VK+L+ D  R +I L++++ D+   K
Sbjct: 685 SGEVVRVKVLEVDVPRKRISLTLRLEDEAQAK 716


>gi|260913556|ref|ZP_05920033.1| YhgF like protein [Pasteurella dagmatis ATCC 43325]
 gi|260632332|gb|EEX50506.1| YhgF like protein [Pasteurella dagmatis ATCC 43325]
          Length = 771

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I+D+ +   + +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD 
Sbjct: 642 VEEISDL-KAGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V VK+L+ D  R +I L+M++
Sbjct: 701 VKVKVLEVDVPRKRIALTMRL 721


>gi|261341906|ref|ZP_05969764.1| protein YhgF [Enterobacter cancerogenus ATCC 35316]
 gi|288315809|gb|EFC54747.1| protein YhgF [Enterobacter cancerogenus ATCC 35316]
          Length = 776

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|212218847|ref|YP_002305634.1| 30S ribosomal protein S1 [Coxiella burnetii CbuK_Q154]
 gi|212013109|gb|ACJ20489.1| SSU ribosomal protein S1P [Coxiella burnetii CbuK_Q154]
          Length = 555

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + ++ E  +I KG +  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++  RV   SD++  GD V VK+L FD D+ ++ L MK
Sbjct: 223 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 260



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN    G+V  + D+G FV      +GLVH S+L  T +    S VV+ G+ V V +L+ 
Sbjct: 276 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 335

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L +K   +N
Sbjct: 336 DEERRRISLGIKQCKRN 352



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL   +  R   +   +  E ++   G+V  + DFG F+   G  DGLVH+S +S TE  
Sbjct: 343 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 402

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            +     K+GD V   +L  D +R +I L +K   Q  G P +
Sbjct: 403 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 442


>gi|167630001|ref|YP_001680500.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium
           modesticaldum Ice1]
 gi|167592741|gb|ABZ84489.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium
           modesticaldum Ice1]
          Length = 665

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           VV++  FGAF       DGL+HISQL+  RV K  DVV  GD V VK+LD  +   +I L
Sbjct: 584 VVRLTPFGAFAELEPGVDGLIHISQLADRRVNKPEDVVSVGDQVKVKVLDIKEAERRISL 643

Query: 686 SMKVVDQN 693
           S++ V ++
Sbjct: 644 SIRAVKED 651



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +  +G V ++ DFGAFV   G  DGL+H+S++S  R+   S+VVKEGD + V +L  
Sbjct: 490 EEGQTRRGTVRRLTDFGAFVDLGGV-DGLLHVSEMSWGRIKHPSEVVKEGDVIDVYVLKV 548

Query: 678 D-DRGKIKLSMKVVDQN 693
           D ++ K+ L +K V  N
Sbjct: 549 DREKEKVSLGLKQVLPN 565


>gi|26986988|ref|NP_742413.1| S1 RNA-binding domain-containing protein [Pseudomonas putida
           KT2440]
 gi|24981603|gb|AAN65877.1|AE016215_12 S1 RNA binding domain protein [Pseudomonas putida KT2440]
          Length = 861

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ 
Sbjct: 734 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 793

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 794 DIPRKRVGLSMRMSD 808


>gi|153950179|ref|YP_001402930.1| hypothetical protein YpsIP31758_3982 [Yersinia pseudotuberculosis
           IP 31758]
 gi|152961674|gb|ABS49135.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 791

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii]
          Length = 343

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 18/211 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
            + D+  R+DGR +  +R I A++G+  +  GS    +G+T+A+ VV       G+R   
Sbjct: 104 ALSDQGYRVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARA 163

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +L   Q       Y+    +TGE  R     R+    G   R+     +       
Sbjct: 164 LPDRALVNCQ-------YSSATFSTGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPR 216

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S
Sbjct: 217 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLS 272

Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKI 509
             E+  G     +A       I  ++MD ++
Sbjct: 273 HVEEAAGGPQLALALLPASGQIALLEMDARL 303


>gi|293115412|ref|ZP_05791358.2| S1 RNA binding domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292810175|gb|EFF69380.1| S1 RNA binding domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 720

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I  G V  V+DFGAFV     +DGLVHISQL++++  K   +VV  GD V VK+L+ D  
Sbjct: 651 ILSGTVRNVIDFGAFVDIGVHQDGLVHISQLTSKKYIKHPMEVVSVGDIVQVKVLNVDIP 710

Query: 680 RGKIKLSM 687
           + +I+LSM
Sbjct: 711 KKRIQLSM 718


>gi|147677954|ref|YP_001212169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Pelotomaculum thermopropionicum SI]
 gi|146274051|dbj|BAF59800.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 667

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S+ +   V  I K +VV++  FGAFV      +GLVHIS L+   V K  +VV EG+ V 
Sbjct: 549 SVQEKYPVGSIVKAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVVKPDEVVSEGEEVN 608

Query: 672 VKLLDFDDRGK-IKLSMKVV 690
           VK+L  D   K I+LS++ V
Sbjct: 609 VKVLSVDQAEKRIRLSIREV 628



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + G  K+  S  A +E     +R  T D  +  ++ KG V ++  FGAFV   G  DGL+
Sbjct: 440 NRGRKKVILSRKAVLEEEYARLRQETLDTLQEGQVVKGTVRRLTQFGAFVDIGGV-DGLL 498

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           HIS++S  R+   S+VVK GD + + +L  D +  KI L +K V  N
Sbjct: 499 HISEMSWHRINHPSEVVKVGDELEIMVLKLDRENEKISLGLKQVLPN 545


>gi|77918517|ref|YP_356332.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544600|gb|ABA88162.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
          Length = 759

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +R I+D+ E   I  G V  V  FGAFV     +DGLVH+S L+   V    +VV+ 
Sbjct: 637 RDDVREISDLKE-GMILSGTVTNVAAFGAFVDIGVHQDGLVHVSHLAHRFVKDPGEVVRV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V VK+L  D  R +I LS+K
Sbjct: 696 GDIVKVKVLSVDAARKRIGLSIK 718


>gi|25028495|ref|NP_738549.1| putative transcriptional accessory protein [Corynebacterium
           efficiens YS-314]
 gi|259507552|ref|ZP_05750452.1| histidine triad domain-containing protein [Corynebacterium
           efficiens YS-314]
 gi|23493780|dbj|BAC18749.1| putative transcriptional accessory protein [Corynebacterium
           efficiens YS-314]
 gi|259164872|gb|EEW49426.1| histidine triad domain-containing protein [Corynebacterium
           efficiens YS-314]
          Length = 775

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ 
Sbjct: 632 KEGVEKISDLSP-GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSEKFISDPHEVVRS 690

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V VK+++ D DR +I LS+++ D+  G+P
Sbjct: 691 GQVVKVKVMEVDVDRKRIGLSLRLNDE-PGQP 721


>gi|332798196|ref|YP_004459695.1| RNA binding S1 domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695931|gb|AEE90388.1| RNA binding S1 domain protein [Tepidanaerobacter sp. Re1]
          Length = 131

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I +G+V  +  FGAFV       GLVHIS+++   V   +D +KE D + VK++  
Sbjct: 4   EVGQILEGRVTGITKFGAFVEISEGVTGLVHISEVADSFVKDVNDFLKENDIIKVKVISI 63

Query: 678 DDRGKIKLSMKVVDQNT 694
              GK+ LS++   +N+
Sbjct: 64  SSDGKVSLSIRKTKENS 80


>gi|297561854|ref|YP_003680828.1| Tex-like protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846302|gb|ADH68322.1| Tex-like protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 797

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S LS + V    DVVK GD V VK+ D D  R
Sbjct: 662 LLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSYKFVEDPRDVVKPGDIVKVKVQDVDIPR 721

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 722 KRISLTMRLDDE 733


>gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7]
          Length = 249

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R         +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASI----EDKVPPFLKGKGE 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 YN +P +T      +++R G    R +   R+  RA+  V+   +    T+ I 
Sbjct: 57  GWITCEYNMIPRSTKVRKVRDINR-GKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             P+   V  I++G+V +    + 
Sbjct: 116 CDVIQADGGTRTASISGAFIALVDAVNKLHKQTPFNVYPVRDFVGAISVGIVGN----VK 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+  +ED   ++D  V  TDSG
Sbjct: 172 MLDLCYEEDSKANVDMNVVMTDSG 195


>gi|300860310|ref|ZP_07106397.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11]
 gi|300849349|gb|EFK77099.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11]
 gi|315144429|gb|EFT88445.1| putative ribosomal protein S1 [Enterococcus faecalis TX2141]
 gi|315160457|gb|EFU04474.1| putative ribosomal protein S1 [Enterococcus faecalis TX0645]
          Length = 403

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAF+   G  DGLVH+S+++ + V K SD +  G+ V VK+L  + + 
Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 266 GRISLSIK 273



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + + 
Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351

Query: 681 GKIKLSMKVVD 691
            +I LS+K ++
Sbjct: 352 HRIALSIKALE 362


>gi|225027513|ref|ZP_03716705.1| hypothetical protein EUBHAL_01769 [Eubacterium hallii DSM 3353]
 gi|224955152|gb|EEG36361.1| hypothetical protein EUBHAL_01769 [Eubacterium hallii DSM 3353]
          Length = 716

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 7/86 (8%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV E+  + +G V+K     V+DFGAFV     +DGLVHISQ++   +    +VV  GD
Sbjct: 631 TDVLEMKDLKEGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGD 690

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693
            + V+++  D ++ +I+L+MK +D N
Sbjct: 691 IIDVQVMSVDLNKKRIQLTMK-IDHN 715


>gi|209364104|ref|YP_001424879.2| 30S ribosomal protein S1 [Coxiella burnetii Dugway 5J108-111]
 gi|215918988|ref|NP_819560.2| 30S ribosomal protein S1 [Coxiella burnetii RSA 493]
 gi|206583873|gb|AAO90074.2| SSU ribosomal protein S1P [Coxiella burnetii RSA 493]
 gi|207082037|gb|ABS77449.2| SSU ribosomal protein S1P [Coxiella burnetii Dugway 5J108-111]
          Length = 555

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + ++ E  +I KG +  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++  RV   SD++  GD V VK+L FD D+ ++ L MK
Sbjct: 223 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 260



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN    G+V  + D+G FV      +GLVH S+L  T +    S VV+ G+ V V +L+ 
Sbjct: 276 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 335

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L +K   +N
Sbjct: 336 DEERRRISLGIKQCKRN 352



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL   +  R   +   +  E ++   G+V  + DFG F+   G  DGLVH+S +S TE  
Sbjct: 343 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 402

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            +     K+GD V   +L  D +R +I L +K   Q  G P +
Sbjct: 403 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 442


>gi|94310177|ref|YP_583387.1| RNA binding S1 [Cupriavidus metallidurans CH34]
 gi|93354029|gb|ABF08118.1| Putative RNA-binding transcription accessory protein [Cupriavidus
           metallidurans CH34]
          Length = 787

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LST+ V    +VVK G  V VK+++ D  R
Sbjct: 665 VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEVDVKR 724

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 725 NRIGLTMRLDDE 736


>gi|22127783|ref|NP_671206.1| hypothetical protein y3913 [Yersinia pestis KIM 10]
 gi|45439997|ref|NP_991536.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001]
 gi|108809326|ref|YP_653242.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
 gi|108814091|ref|YP_649858.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
 gi|145597384|ref|YP_001161459.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
 gi|150260816|ref|ZP_01917544.1| predicted transcriptional accessory protein [Yersinia pestis
           CA88-4125]
 gi|162421540|ref|YP_001608058.1| hypothetical protein YpAngola_A3743 [Yersinia pestis Angola]
 gi|165928028|ref|ZP_02223860.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936122|ref|ZP_02224691.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010602|ref|ZP_02231500.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213288|ref|ZP_02239323.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398728|ref|ZP_02304252.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418783|ref|ZP_02310536.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425730|ref|ZP_02317483.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468692|ref|ZP_02333396.1| hypothetical protein YpesF_12509 [Yersinia pestis FV-1]
 gi|218927345|ref|YP_002345220.1| hypothetical protein YPO0134 [Yersinia pestis CO92]
 gi|229836385|ref|ZP_04456552.1| predicted transcriptional accessory protein [Yersinia pestis
           Pestoides A]
 gi|229839990|ref|ZP_04460149.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842071|ref|ZP_04462226.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904628|ref|ZP_04519739.1| predicted transcriptional accessory protein [Yersinia pestis
           Nepal516]
 gi|270488159|ref|ZP_06205233.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294502224|ref|YP_003566286.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
 gi|21960912|gb|AAM87457.1|AE013996_2 hypothetical protein y3913 [Yersinia pestis KIM 10]
 gi|45434852|gb|AAS60413.1| Predicted RNA binding protein, Contains S1 domain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108777739|gb|ABG20258.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
 gi|108781239|gb|ABG15297.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
 gi|115345956|emb|CAL18820.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209080|gb|ABP38487.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
 gi|149290224|gb|EDM40301.1| predicted transcriptional accessory protein [Yersinia pestis
           CA88-4125]
 gi|162354355|gb|ABX88303.1| conserved hypothetical protein [Yersinia pestis Angola]
 gi|165915736|gb|EDR34344.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165919977|gb|EDR37278.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990692|gb|EDR42993.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205586|gb|EDR50066.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962777|gb|EDR58798.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051232|gb|EDR62640.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055420|gb|EDR65214.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229678746|gb|EEO74851.1| predicted transcriptional accessory protein [Yersinia pestis
           Nepal516]
 gi|229690381|gb|EEO82435.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696356|gb|EEO86403.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706453|gb|EEO92460.1| predicted transcriptional accessory protein [Yersinia pestis
           Pestoides A]
 gi|262360303|gb|ACY57024.1| hypothetical protein YPD4_0115 [Yersinia pestis D106004]
 gi|270336663|gb|EFA47440.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294352683|gb|ADE63024.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
 gi|320013270|gb|ADV96841.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 791

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|313621003|gb|EFR92132.1| general stress protein 13 [Listeria innocua FSL S4-378]
          Length = 69

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKI 683
            D GKI
Sbjct: 64  GDDGKI 69


>gi|170022431|ref|YP_001718936.1| RNA-binding S1 domain-containing protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169748965|gb|ACA66483.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 791

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|311071146|ref|YP_003976069.1| putative RNA helicase [Bacillus atrophaeus 1942]
 gi|310871663|gb|ADP35138.1| putative RNA helicase [Bacillus atrophaeus 1942]
          Length = 719

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV  +D   +G
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDA-QKG 711

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 712 RVSLSM 717


>gi|222055457|ref|YP_002537819.1| ribosomal protein S1 [Geobacter sp. FRC-32]
 gi|221564746|gb|ACM20718.1| ribosomal protein S1 [Geobacter sp. FRC-32]
          Length = 586

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEV-NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E  RE  RS T        + +G V  + D+GAFV   G  DGL+H++ +S
Sbjct: 193 IVLSRRALLEEEREKARSTTLATLAEGDVLEGVVKNIADYGAFVDLGGV-DGLLHVTDMS 251

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   S+ VK GD + VK+L +D ++GKI L +K
Sbjct: 252 WGRLNHPSEAVKVGDALKVKVLKYDREKGKISLGLK 287



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG+V  + DFG F+      +GLVHIS+LS E++A T D    GD +   +L  DD   K
Sbjct: 482 KGKVTSITDFGIFLEIEEGIEGLVHISELSQEKLASTKDFAAVGDELEAVVLGVDDVEKK 541

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 542 IALSIKAL 549



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           I D   V    +GQ+  + DFG F+      DGLVH+S +S T+R+    ++  +G T+ 
Sbjct: 384 IGDRYPVGTKIEGQIKNITDFGVFIGIEDGIDGLVHVSDISWTKRIKHPGEIFGKGQTIQ 443

Query: 672 VKLLDFDDRGKIKLSMKV 689
             +L+ D   + +LS+ +
Sbjct: 444 AVVLNIDSENE-RLSLGI 460



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV + ++GAF+      +GLVHIS++S T+RV   S+++  G  V   +L  D    
Sbjct: 308 QGKVVSLTEYGAFIALGEGVEGLVHISEMSWTKRVRHPSELLTVGQEVEAVVLGVDVSSR 367

Query: 682 KIKLSMKVVDQN 693
           +I L +K  + N
Sbjct: 368 RISLGLKQTEVN 379


>gi|146313452|ref|YP_001178526.1| RNA-binding S1 domain-containing protein [Enterobacter sp. 638]
 gi|145320328|gb|ABP62475.1| RNA binding S1 domain protein [Enterobacter sp. 638]
          Length = 776

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVQDPHTVVKAGDIVKVKVLEVDMPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|90962233|ref|YP_536149.1| transcription accessory protein [Lactobacillus salivarius UCC118]
 gi|301299872|ref|ZP_07206106.1| Tex-like protein N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821427|gb|ABE00066.1| Transcription accessory protein [Lactobacillus salivarius UCC118]
 gi|300852543|gb|EFK80193.1| Tex-like protein N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 723

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVH+S+LS + V+   DVV  G   TVWV+ +D  +R 
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVTVWVEDVDL-NRK 712

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 713 RIQLTM 718


>gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 [Enterococcus faecalis V583]
 gi|227518739|ref|ZP_03948788.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104]
 gi|227553349|ref|ZP_03983398.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22]
 gi|229545836|ref|ZP_04434561.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322]
 gi|255975865|ref|ZP_05426451.1| SSU ribosomal protein S1P [Enterococcus faecalis T2]
 gi|256619051|ref|ZP_05475897.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200]
 gi|256762477|ref|ZP_05503057.1| SSU ribosomal protein S1P [Enterococcus faecalis T3]
 gi|256853113|ref|ZP_05558483.1| ribosomal protein S1 [Enterococcus faecalis T8]
 gi|256958968|ref|ZP_05563139.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5]
 gi|256961939|ref|ZP_05566110.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96]
 gi|256965137|ref|ZP_05569308.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704]
 gi|257078999|ref|ZP_05573360.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1]
 gi|257082562|ref|ZP_05576923.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol]
 gi|257085195|ref|ZP_05579556.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1]
 gi|257086756|ref|ZP_05581117.1| SSU ribosomal protein S1P [Enterococcus faecalis D6]
 gi|257089873|ref|ZP_05584234.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188]
 gi|257419284|ref|ZP_05596278.1| 30S ribosomal protein S1P [Enterococcus faecalis T11]
 gi|293383007|ref|ZP_06628925.1| ribosomal protein S1 [Enterococcus faecalis R712]
 gi|293389504|ref|ZP_06633961.1| ribosomal protein S1 [Enterococcus faecalis S613]
 gi|294781351|ref|ZP_06746694.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1]
 gi|307271030|ref|ZP_07552313.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248]
 gi|307273237|ref|ZP_07554483.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855]
 gi|307274974|ref|ZP_07556137.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134]
 gi|307278086|ref|ZP_07559170.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860]
 gi|307289093|ref|ZP_07569049.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109]
 gi|307292008|ref|ZP_07571877.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411]
 gi|312900748|ref|ZP_07760045.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470]
 gi|312903295|ref|ZP_07762475.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635]
 gi|312907522|ref|ZP_07766513.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512]
 gi|312910140|ref|ZP_07768987.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516]
 gi|29343573|gb|AAO81335.1| ribosomal protein S1 [Enterococcus faecalis V583]
 gi|227073820|gb|EEI11783.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104]
 gi|227177518|gb|EEI58490.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22]
 gi|229309035|gb|EEN75022.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322]
 gi|255968737|gb|EET99359.1| SSU ribosomal protein S1P [Enterococcus faecalis T2]
 gi|256598578|gb|EEU17754.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200]
 gi|256683728|gb|EEU23423.1| SSU ribosomal protein S1P [Enterococcus faecalis T3]
 gi|256711572|gb|EEU26610.1| ribosomal protein S1 [Enterococcus faecalis T8]
 gi|256949464|gb|EEU66096.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5]
 gi|256952435|gb|EEU69067.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96]
 gi|256955633|gb|EEU72265.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704]
 gi|256987029|gb|EEU74331.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1]
 gi|256990592|gb|EEU77894.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol]
 gi|256993225|gb|EEU80527.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1]
 gi|256994786|gb|EEU82088.1| SSU ribosomal protein S1P [Enterococcus faecalis D6]
 gi|256998685|gb|EEU85205.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188]
 gi|257161112|gb|EEU91072.1| 30S ribosomal protein S1P [Enterococcus faecalis T11]
 gi|291079672|gb|EFE17036.1| ribosomal protein S1 [Enterococcus faecalis R712]
 gi|291081121|gb|EFE18084.1| ribosomal protein S1 [Enterococcus faecalis S613]
 gi|294451581|gb|EFG20040.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1]
 gi|295112972|emb|CBL31609.1| SSU ribosomal protein S1P [Enterococcus sp. 7L76]
 gi|306497006|gb|EFM66554.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411]
 gi|306499802|gb|EFM69163.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109]
 gi|306505483|gb|EFM74669.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860]
 gi|306508422|gb|EFM77529.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134]
 gi|306510222|gb|EFM79246.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855]
 gi|306512528|gb|EFM81177.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248]
 gi|310626550|gb|EFQ09833.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512]
 gi|310633171|gb|EFQ16454.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635]
 gi|311289413|gb|EFQ67969.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516]
 gi|311292229|gb|EFQ70785.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470]
 gi|315027278|gb|EFT39210.1| putative ribosomal protein S1 [Enterococcus faecalis TX2137]
 gi|315029397|gb|EFT41329.1| putative ribosomal protein S1 [Enterococcus faecalis TX4000]
 gi|315033957|gb|EFT45889.1| putative ribosomal protein S1 [Enterococcus faecalis TX0017]
 gi|315036966|gb|EFT48898.1| putative ribosomal protein S1 [Enterococcus faecalis TX0027]
 gi|315147252|gb|EFT91268.1| putative ribosomal protein S1 [Enterococcus faecalis TX4244]
 gi|315150549|gb|EFT94565.1| putative ribosomal protein S1 [Enterococcus faecalis TX0012]
 gi|315164002|gb|EFU08019.1| putative ribosomal protein S1 [Enterococcus faecalis TX1302]
 gi|315169047|gb|EFU13064.1| putative ribosomal protein S1 [Enterococcus faecalis TX1341]
 gi|315172324|gb|EFU16341.1| putative ribosomal protein S1 [Enterococcus faecalis TX1346]
 gi|315575879|gb|EFU88070.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309B]
 gi|315577719|gb|EFU89910.1| putative ribosomal protein S1 [Enterococcus faecalis TX0630]
 gi|315580531|gb|EFU92722.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309A]
 gi|323480711|gb|ADX80150.1| 30S ribosomal protein S1-like protein [Enterococcus faecalis 62]
 gi|327535120|gb|AEA93954.1| 30S ribosomal protein S1 [Enterococcus faecalis OG1RF]
          Length = 403

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ DFGAF+   G  DGLVH+S+++ + V K SD +  G+ V VK+L  + + 
Sbjct: 207 VVEGKVARLTDFGAFIDLGGV-DGLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEE 265

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 266 GRISLSIK 273



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + + 
Sbjct: 292 VLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEE 351

Query: 681 GKIKLSMKVVD 691
            +I LS+K ++
Sbjct: 352 HRIALSIKALE 362


>gi|21225037|ref|NP_630816.1| transcriptional accessory protein [Streptomyces coelicolor A3(2)]
 gi|4584490|emb|CAB40693.1| putative transcriptional accessory protein [Streptomyces coelicolor
           A3(2)]
          Length = 780

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 641 KEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKP 699

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT--GKP 697
           GD V VK++D D  R +I L++++ D+    G+P
Sbjct: 700 GDIVKVKVMDVDIPRKRISLTLRLDDEAAPQGEP 733


>gi|126172391|ref|YP_001048540.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS155]
 gi|125995596|gb|ABN59671.1| RNA binding S1 domain protein [Shewanella baltica OS155]
          Length = 787

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  + +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++
Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVME 712

Query: 677 FD-DRGKIKLSMKV---VDQN 693
            D +R +I LSM++   +DQ+
Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733


>gi|313496609|gb|ADR57975.1| S1 RNA-binding domain-containing protein [Pseudomonas putida
           BIRD-1]
          Length = 774

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ 
Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551]
 gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551]
          Length = 248

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R +S     L+   GS L   GDT+ I   ++    D++    + G  +
Sbjct: 1   MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASI----DDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +PI   +A  ++G+   G++ I+ 
Sbjct: 117 DVIQADGGTRTASITGAFVAMVLAFGKLVEENKLTEIPIRDYLAATSVGI--HGENSIL- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  +  T SG
Sbjct: 174 -DLNYEEDSTAEVDMNIVMTGSG 195


>gi|289644109|ref|ZP_06476204.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506078|gb|EFD27082.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 484

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +
Sbjct: 214 QIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLE 272

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ LS+K   ++  +
Sbjct: 273 RERVSLSLKATQEDPWR 289



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D
Sbjct: 297 IGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDID 356

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DR +I LS+K  + ++ 
Sbjct: 357 LDRRRISLSLKQANDSSA 374


>gi|320139405|gb|EFW31283.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA131]
          Length = 133

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    + +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELSEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|325110553|ref|YP_004271621.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324970821|gb|ADY61599.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 556

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+H+ +LS  RV   SDV++EG  V VK+L  D ++ KI
Sbjct: 351 GTVKTIKDYGAFVDIGGV-DGLLHVRELSWTRVNHPSDVLQEGQQVEVKVLSIDQEKKKI 409

Query: 684 KLSMK 688
            L MK
Sbjct: 410 SLGMK 414



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           N +  G V K  DFGAFV      +GL+HIS+L   RV +  DV+ EG     ++L+ + 
Sbjct: 431 NTVVTGLVKKTTDFGAFVEIEPGLEGLIHISELDFRRVNRVEDVLTEGQETEAQVLEINK 490

Query: 679 DRGKIKLSMKVV 690
           ++ +I LS+K +
Sbjct: 491 NKKRISLSLKSI 502


>gi|261415158|ref|YP_003248841.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371614|gb|ACX74359.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 590

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E N++ KG V  + DFGAF+   G  DGL+HI+ +S +R+   S++++ G  V V +LDF
Sbjct: 210 EKNQVRKGIVKNITDFGAFIDLGGV-DGLLHITDMSYKRINHPSEMLQLGQEVEVMVLDF 268

Query: 678 DDRG-KIKLSMKVVDQNTGKPI 698
           +D+  +I L MK +  +  K I
Sbjct: 269 NDKKERISLGMKQLKPHPWKDI 290



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  +  FGAFV      DGL+H+S +S T+++   +++VK+GD V   +L  D ++ +
Sbjct: 389 GEIRNIASFGAFVEIKEGVDGLIHVSDMSWTKKITHPNEMVKKGDKVECVVLAVDKEKRR 448

Query: 683 IKLSMK 688
           I LSMK
Sbjct: 449 ISLSMK 454



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF-DD 679
           I KG+VV + D+GAFV      +GL+H+S++S T+ V   S ++  G  V   +L   +D
Sbjct: 299 IVKGKVVSITDYGAFVELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEED 358

Query: 680 RGKIKLSMK 688
             +I L MK
Sbjct: 359 AERISLGMK 367


>gi|71278192|ref|YP_269055.1| 30S ribosomal protein S1 [Colwellia psychrerythraea 34H]
 gi|71143932|gb|AAZ24405.1| ribosomal protein S1 [Colwellia psychrerythraea 34H]
          Length = 553

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A R E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV  
Sbjct: 176 AEGSAERDELLESLAEGQEV----KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L MK
Sbjct: 231 PSEIVNVGDEIQVKVLKFDRERTRVSLGMK 260



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIQEGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVLVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V +V   GA +    + +G + +S +S ER+   S V+K GD V  + +  D + 
Sbjct: 452 IVTGKVTEVDAKGATILLAESVEGYLRVSDISVERIEDASTVLKVGDDVEARFMGVDRKN 511

Query: 682 K-IKLSMKVVDQ 692
           + I LS+K  DQ
Sbjct: 512 RTISLSIKAKDQ 523


>gi|304385529|ref|ZP_07367873.1| S1 RNA-binding domain protein [Pediococcus acidilactici DSM 20284]
 gi|304328033|gb|EFL95255.1| S1 RNA-binding domain protein [Pediococcus acidilactici DSM 20284]
          Length = 149

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     R GLVHIS++S   V     V+K GD+V VK+L  
Sbjct: 4   EVGTKVDGKVSGITNFGAFVDLGEHRSGLVHISEVSDSFVKDIHSVLKVGDSVTVKVLSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  ADDGKIALSIR 74


>gi|300691366|ref|YP_003752361.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
 gi|299078426|emb|CBJ51078.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
          Length = 779

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 666 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQVVKVKVMEVDVKR 725

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 726 NRIGLTMRLADE 737


>gi|332362463|gb|EGJ40263.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|308068003|ref|YP_003869608.1| hypothetical protein PPE_01222 [Paenibacillus polymyxa E681]
 gi|305857282|gb|ADM69070.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 740

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQL +  V    DVV  GD V V +L+ D  +G+
Sbjct: 666 QGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 725

Query: 683 IKLSMK 688
           + L+MK
Sbjct: 726 VGLTMK 731


>gi|170759608|ref|YP_001786542.1| 30S ribosomal protein S1 [Clostridium botulinum A3 str. Loch Maree]
 gi|169406597|gb|ACA55008.1| ribosomal protein S1 [Clostridium botulinum A3 str. Loch Maree]
          Length = 387

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 619 VNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V 
Sbjct: 192 LNSLEKGQKIEGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVY 250

Query: 674 LLDFD-DRGKIKLSMKVVDQ---NTGK 696
           +LDFD D  KI LS+K V +   NT K
Sbjct: 251 VLDFDKDTKKIALSLKDVKKDPWNTAK 277



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 7/110 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  T KIA   L+  +  ++   +  D   V  + +G VVK+++FGAFV      +GLVH
Sbjct: 255 DKDTKKIA---LSLKDVKKDPWNTAKDKYTVGSVVEGIVVKLLNFGAFVEVEKGIEGLVH 311

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS+K   + T KP
Sbjct: 312 ISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIK---EATEKP 358


>gi|148545516|ref|YP_001265618.1| RNA-binding S1 domain-containing protein [Pseudomonas putida F1]
 gi|148509574|gb|ABQ76434.1| RNA binding S1 domain protein [Pseudomonas putida F1]
          Length = 774

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ 
Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|327470660|gb|EGF16116.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330]
          Length = 710

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|167771538|ref|ZP_02443591.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM
           17241]
 gi|167666178|gb|EDS10308.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM
           17241]
          Length = 662

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +VV +  FGAF       DGL+HISQ+S ERV K SDV+  G  V VK+ + D ++ ++ 
Sbjct: 568 KVVSMTPFGAFAQIIPGIDGLIHISQISNERVNKPSDVLSIGQEVEVKITELDTEKKRVS 627

Query: 685 LSMKVVDQN 693
           LS++ ++++
Sbjct: 628 LSIRALNED 636



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ + Y G V  +  +GAFV+  G  DG+VHIS+LS  R+   S+VV  GDTV V + D 
Sbjct: 475 EIGRHYTGVVKSLTSYGAFVNL-GGVDGMVHISELSWHRIKHPSEVVNVGDTVDVYIKDI 533

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +  KI L  K  + N
Sbjct: 534 DAENKKISLGFKKAEDN 550


>gi|328850997|gb|EGG00156.1| hypothetical protein MELLADRAFT_93831 [Melampsora larici-populina
           98AG31]
          Length = 462

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P + KIY+G V  V D+G FV   G     +G+VH++ +++ R+   SD+V     V VK
Sbjct: 233 PILFKIYQGTVTSVKDYGCFVSLEGISERSEGMVHVNLITSTRINHPSDLVSRNQKVKVK 292

Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695
           ++      ++ LSMK VDQNTG
Sbjct: 293 VMSIVG-TRLSLSMKDVDQNTG 313


>gi|322385171|ref|ZP_08058818.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
 gi|321270795|gb|EFX53708.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
          Length = 400

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  GD + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G  V VK+L+ +   
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALKVGQEVTVKVLEVNAAA 340

Query: 682 -KIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|304437100|ref|ZP_07397063.1| general stress protein 13 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370051|gb|EFM23713.1| general stress protein 13 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 153

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + +FGAFV     + GL+HIS+++   V+   D +KE D V VK+L  DDRGKI LS+K 
Sbjct: 22  ITNFGAFVELPEGKTGLIHISEVADVYVSDVHDFLKEHDKVKVKVLTVDDRGKIGLSIKA 81

Query: 690 V 690
           +
Sbjct: 82  L 82


>gi|302541359|ref|ZP_07293701.1| putative transcriptional accessory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458977|gb|EFL22070.1| putative transcriptional accessory protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 813

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  R
Sbjct: 668 ILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVRVKVLDVDIPR 727

Query: 681 GKIKLSMKVVD 691
            +I L++++ D
Sbjct: 728 KRISLTLRLDD 738


>gi|168025428|ref|XP_001765236.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683555|gb|EDQ69964.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 421

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           ++ G+V  V  +GAFV      DGLVHIS+L+ + V + +DVV  G  V V++L+ +++ 
Sbjct: 139 VFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLELNEKA 198

Query: 681 GKIKLSMK 688
           G+I L+M+
Sbjct: 199 GRIALTMR 206


>gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
          Length = 410

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+++   +        + +G+V ++ +FGAF+   G  DGLVH+S++S + V K +DV
Sbjct: 189 EAAKKIFSELV----AGDVVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPADV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ G  V VK+L+ D +R +I LS+K
Sbjct: 244 LEVGQEVKVKVLNVDPERERISLSIK 269



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV++ G  V VK+L+ D
Sbjct: 285 VGTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVD 344

Query: 679 -DRGKIKLSMKVVDQ 692
            +R ++ LS+K +++
Sbjct: 345 PERQRLGLSIKALEE 359


>gi|260893017|ref|YP_003239114.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
           KC4]
 gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
           KC4]
          Length = 654

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 616 VPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           VPE   V  + + +VV++  FGAFV      +GL+HIS  +   V K  DV+KEGD V V
Sbjct: 548 VPEKYPVGSLVEVKVVRLAPFGAFVELEPGVEGLIHISHFADWHVEKPEDVLKEGDVVTV 607

Query: 673 KLLDFDDRGK-IKLSMK 688
           +++ FD + K ++LS++
Sbjct: 608 RVISFDPQEKRLRLSLR 624



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V +++ FGAF+   G  DGL+H+S+++  RV    +V+KEG  + VK++  D + 
Sbjct: 472 VVKGVVRRIVPFGAFIDLGGV-DGLLHVSEIAWHRVNSPDEVLKEGQEIEVKVIKVDREN 530

Query: 681 GKIKLSMKVV 690
            K+ LS K +
Sbjct: 531 EKVSLSRKAL 540


>gi|86738935|ref|YP_479335.1| RNA binding S1 [Frankia sp. CcI3]
 gi|86565797|gb|ABD09606.1| RNA binding S1 [Frankia sp. CcI3]
          Length = 864

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 608 EMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           E I ++ D VP +    +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK 
Sbjct: 651 EGIETLADLVPGMT--LEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVVKP 708

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ-NTGKP 697
           GD V VK+LD D  R +I L++++ D+   G P
Sbjct: 709 GDIVTVKVLDVDIPRKRISLTLRLDDEAGAGGP 741


>gi|325272397|ref|ZP_08138792.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324102474|gb|EGB99925.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 774

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ 
Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|254361237|ref|ZP_04977380.1| ribosomal protein S1 [Mannheimia haemolytica PHL213]
 gi|153092733|gb|EDN73776.1| ribosomal protein S1 [Mannheimia haemolytica PHL213]
          Length = 555

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD V VK+L FD D+ +
Sbjct: 196 KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTR 254

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 255 VSLGLKQLGQD 265


>gi|153207789|ref|ZP_01946389.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
 gi|165924110|ref|ZP_02219942.1| ribosomal protein S1 [Coxiella burnetii RSA 334]
 gi|120576341|gb|EAX32965.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
 gi|165916449|gb|EDR35053.1| ribosomal protein S1 [Coxiella burnetii RSA 334]
          Length = 551

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + ++ E  +I KG +  + D+GAFV   G  DGL+HI+ 
Sbjct: 161 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 218

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++  RV   SD++  GD V VK+L FD D+ ++ L MK
Sbjct: 219 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 256



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN    G+V  + D+G FV      +GLVH S+L  T +    S VV+ G+ V V +L+ 
Sbjct: 272 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 331

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L +K   +N
Sbjct: 332 DEERRRISLGIKQCKRN 348



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + DFG F+   G  DGLVH+S +S TE   +     K+GD V   +L  D +R +
Sbjct: 365 GKVRSITDFGMFIGLEGDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERER 424

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K   Q  G P +
Sbjct: 425 ISLGIK---QLEGDPFM 438


>gi|261492540|ref|ZP_05989093.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495207|ref|ZP_05991669.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309132|gb|EEY10373.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311699|gb|EEY12849.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 555

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD V VK+L FD D+ +
Sbjct: 196 KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTR 254

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 255 VSLGLKQLGQD 265


>gi|161831346|ref|YP_001596460.1| 30S ribosomal protein S1 [Coxiella burnetii RSA 331]
 gi|81629367|sp|Q83E09|RS1_COXBU RecName: Full=30S ribosomal protein S1
 gi|161763213|gb|ABX78855.1| ribosomal protein S1 [Coxiella burnetii RSA 331]
          Length = 551

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + ++ E  +I KG +  + D+GAFV   G  DGL+HI+ 
Sbjct: 161 NVVVSRRAVMEAETSAERQARLEELQEGQEI-KGVIKNITDYGAFVDLGGV-DGLLHITD 218

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++  RV   SD++  GD V VK+L FD D+ ++ L MK
Sbjct: 219 MAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMK 256



 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN    G+V  + D+G FV      +GLVH S+L  T +    S VV+ G+ V V +L+ 
Sbjct: 272 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 331

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L +K   +N
Sbjct: 332 DEERRRISLGIKQCKRN 348



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL   +  R   +   +  E ++   G+V  + DFG F+   G  DGLVH+S +S TE  
Sbjct: 339 SLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESG 398

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            +     K+GD V   +L  D +R +I L +K   Q  G P +
Sbjct: 399 EEAIRNYKKGDEVQAVILGIDPERERISLGIK---QLEGDPFM 438


>gi|17546342|ref|NP_519744.1| transcription accessory protein [Ralstonia solanacearum GMI1000]
 gi|17428639|emb|CAD15325.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 779

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 666 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 725

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 726 NRIGLTMRLTDE 737


>gi|328552793|gb|AEB23285.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens TA208]
          Length = 378

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD ++  
Sbjct: 271 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESE 330

Query: 681 GKIKLSMKVVDQ 692
            +I LSM+ +++
Sbjct: 331 ERISLSMRELEE 342



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              D + +K+   +D   I LS + VD +
Sbjct: 62  NVDDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|302344133|ref|YP_003808662.1| ribosomal protein S1 [Desulfarculus baarsii DSM 2075]
 gi|301640746|gb|ADK86068.1| ribosomal protein S1 [Desulfarculus baarsii DSM 2075]
          Length = 582

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           V E N + +G V  + D+G FV   G  DGL+HI+ +S  RV   SD+   GD + VK+L
Sbjct: 209 VLEENAVMRGVVKNITDYGVFVDLGGI-DGLLHITDMSWGRVGHPSDMFHIGDEITVKVL 267

Query: 676 DFD-DRGKIKLSMK 688
           +FD DR ++ L +K
Sbjct: 268 NFDRDRERVSLGLK 281



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G+VV + D+GAFV      +GL+H+S++S T +V   S +V  GD V   +L  +   K
Sbjct: 302 RGKVVSLADYGAFVEVDEGIEGLIHVSEMSWTRKVRHPSKIVNVGDEVEAVVLSLNPESK 361

Query: 683 -IKLSMKVVDQN 693
            I L MK V+ N
Sbjct: 362 RISLGMKQVEPN 373



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRGK 682
           G V  V DFG FV      +GL+H+S++S +++     + + GDT+  K+      DR K
Sbjct: 477 GVVTNVTDFGVFVELEEGVEGLIHVSEISGDKIKTPVGMFEIGDTITAKVTSISRKDR-K 535

Query: 683 IKLSMKVVDQ 692
           I LSM+ +D+
Sbjct: 536 IGLSMRRLDE 545



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +G+V  V DFG F+      DGLVH+S +S ++R+    ++ K+GD V   +L+ D
Sbjct: 389 EGRVKNVTDFGLFIGIDEGIDGLVHVSDISWSKRIKHPGEIYKKGDEVRAVVLNID 444


>gi|168025430|ref|XP_001765237.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683556|gb|EDQ69965.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 899

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           ++ G+V  V  +GAFV      DGLVHIS+L+ + V + +DVV  G  V V++L+ +++ 
Sbjct: 67  VFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLELNEKA 126

Query: 681 GKIKLSMK 688
           G+I L+M+
Sbjct: 127 GRIALTMR 134


>gi|23015945|ref|ZP_00055708.1| COG2183: Transcriptional accessory protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 784

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + ++ D+ +   I +G V  V +FGAFV     +DGLVHIS L+   V    +VVK 
Sbjct: 653 KEGVETLNDL-KPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKP 711

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689
           GD V VK+L+ D  R +I LSM++
Sbjct: 712 GDLVKVKVLEVDLKRQRIALSMRM 735


>gi|251798940|ref|YP_003013671.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
 gi|247546566|gb|ACT03585.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 747

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+      DGLVHISQ+S + V    DVV  GD  TVWV  +D   +G
Sbjct: 679 QGTVRNVIDFGAFIDIGIKNDGLVHISQMSDKFVKHPMDVVSVGDNVTVWVLGVDL-KKG 737

Query: 682 KIKLSMK 688
           ++ L+M+
Sbjct: 738 RVSLTMR 744


>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
 gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|300910087|ref|ZP_07127547.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112]
 gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
 gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|300892735|gb|EFK86095.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112]
 gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
          Length = 416

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V+ +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G  V VK+++ D
Sbjct: 286 VDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVD 345

Query: 679 -DRGKIKLSMKVVDQ 692
            +  ++ LSMK +++
Sbjct: 346 PEHQRLGLSMKALEE 360



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V ++ +FGAF+   G  DGLVH+S++S + V K SDV+  G  V VK+L  D +R
Sbjct: 204 VVEGKVARMTNFGAFIDLGGV-DGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPER 262

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 263 ERISLSIK 270


>gi|104779512|ref|YP_606010.1| RNA-binding transcription accessory protein [Pseudomonas
           entomophila L48]
 gi|95108499|emb|CAK13193.1| putative RNA-binding transcription accessory protein [Pseudomonas
           entomophila L48]
          Length = 775

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ 
Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 478

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D D
Sbjct: 207 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDMD 265

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 266 RERVSLSLKATQED 279



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VVK G+ V+VK++D D
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 350 LERRRISLSLKQANE 364


>gi|313905272|ref|ZP_07838639.1| Tex-like protein [Eubacterium cellulosolvens 6]
 gi|313469883|gb|EFR65218.1| Tex-like protein [Eubacterium cellulosolvens 6]
          Length = 734

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVK 665
           R  + S+ D+ E   I KG V  V+DFGAFV     +DGLVHIS++S  +  K   DVV 
Sbjct: 649 RSDVLSMEDLKE-GMILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSDRKFVKHPLDVVS 707

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            GD V VK++  D  + +I LSMK ++
Sbjct: 708 VGDIVKVKVISVDLSKKRIGLSMKGIE 734


>gi|308066886|ref|YP_003868491.1| hypothetical protein PPE_00051 [Paenibacillus polymyxa E681]
 gi|305856165|gb|ADM67953.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 174

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVMVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  GKI LS+K   Q   KP
Sbjct: 64  DKDGKIGLSIK---QTIDKP 80


>gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 484

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +
Sbjct: 210 QIRKGIVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDME 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV  GD V VK++D 
Sbjct: 292 QIGEIVPGKVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDI 351

Query: 678 D-DRGKIKLSMKVVDQ 692
           D +R +I LS+K  ++
Sbjct: 352 DLERRRISLSLKQANE 367


>gi|297559937|ref|YP_003678911.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844385|gb|ADH66405.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 496

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+ ++  +  +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G
Sbjct: 199 EVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVG 257

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V V++LD D +R ++ LS+K   ++
Sbjct: 258 QEVTVEVLDVDMERERVSLSLKATQED 284



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  ++VK++D 
Sbjct: 294 QIGQVVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGTEIFVKIIDI 353

Query: 678 D-DRGKIKLSMKVVDQN 693
           D DR +I LS+K  +++
Sbjct: 354 DLDRRRISLSLKQANES 370


>gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
 gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
          Length = 483

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VVK G+ V+VK++D D
Sbjct: 293 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDID 352

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 353 LERRRISLSLK 363



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 210 QVRTGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
           17982]
 gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|153798485|gb|EDN80905.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
           17982]
 gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
          Length = 478

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VVK G+ V+VK++D D
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 350 LERRRISLSLKQANE 364



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 207 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 265

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 266 RERVSLSLKATQED 279


>gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
 gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
 gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
 gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08]
          Length = 252

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 14  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 69

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRR-EIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT E  R G  SRR +IG       RL  R++  V+   A    T+ + 
Sbjct: 70  WVTAEYEMLPRATNE--RSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILD 127

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA           G PI+  V  I++G+V      + 
Sbjct: 128 CDVLQADGGTRTASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVVGG----VP 183

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D++ +ED     D  V  + SG
Sbjct: 184 MLDLAYEEDSRADTDMNVVMSGSG 207



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 24  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 82

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 83  NERSG----RESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQAD--GG 136

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L G P  G V    V  + G  +L+   +ED  + 
Sbjct: 137 TRTASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVVGGVPMLDLAYEEDSRAD 196

Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +SG+ D V +    E    + D++ + +      C  + +A S++
Sbjct: 197 TDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEV 247


>gi|299066633|emb|CBJ37826.1| transcriptional accessory protein [Ralstonia solanacearum CMR15]
          Length = 802

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 689 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 748

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 749 NRIGLTMRLTDE 760


>gi|18311456|ref|NP_563390.1| hypothetical protein CPE2474 [Clostridium perfringens str. 13]
 gi|110801416|ref|YP_697162.1| hypothetical protein CPF_2797 [Clostridium perfringens ATCC 13124]
 gi|110802862|ref|YP_699730.1| hypothetical protein CPR_2483 [Clostridium perfringens SM101]
 gi|168206869|ref|ZP_02632874.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|168218338|ref|ZP_02643963.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|169343178|ref|ZP_02864199.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|182627411|ref|ZP_02955025.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|18146140|dbj|BAB82180.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110676063|gb|ABG85050.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110683363|gb|ABG86733.1| RNA-binding protein [Clostridium perfringens SM101]
 gi|169298730|gb|EDS80806.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170661722|gb|EDT14405.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|177907094|gb|EDT69975.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|182379661|gb|EDT77140.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 134

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+++ + +FGAFV   G + GLVHIS+++   V    + +KE D V VK++  DD+G
Sbjct: 8   ILEGRIINITNFGAFVEVEG-KTGLVHISEVADTYVKDIREHLKEDDKVKVKVISVDDKG 66

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 67  KISLSIK 73


>gi|325912014|ref|ZP_08174416.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D]
 gi|325476199|gb|EGC79363.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D]
          Length = 395

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682
           +G+V ++  FGAF++  G  DGLVHIS++S + + K SDV+K G  V VK++   DDR +
Sbjct: 202 EGKVSRLTGFGAFINVGGV-DGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRR 260

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 261 ISLSIK 266



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  +  FGAF+       GLVH+S++S +RV K SD +K G TV VK+L  D   
Sbjct: 285 IIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSD 344

Query: 682 K-IKLSMK 688
           K I LS+K
Sbjct: 345 KRISLSIK 352


>gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988]
          Length = 248

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++ +G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLDEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|311104858|ref|YP_003977711.1| protein tex [Achromobacter xylosoxidans A8]
 gi|310759547|gb|ADP14996.1| protein tex [Achromobacter xylosoxidans A8]
          Length = 791

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V  +N +Y G V++     V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV
Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            VK+L+ D  R ++ L+M++ D
Sbjct: 721 SVKVLEVDAARKRVALTMRLND 742


>gi|259500657|ref|ZP_05743559.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335]
 gi|302191346|ref|ZP_07267600.1| 30S ribosomal protein S1 [Lactobacillus iners AB-1]
 gi|309804181|ref|ZP_07698259.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d]
 gi|309805734|ref|ZP_07699774.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c]
 gi|309807097|ref|ZP_07701076.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b]
 gi|309807721|ref|ZP_07701656.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a]
 gi|309809307|ref|ZP_07703176.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D]
 gi|312871404|ref|ZP_07731499.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a]
 gi|312872369|ref|ZP_07732439.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1]
 gi|312873932|ref|ZP_07733968.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d]
 gi|312875507|ref|ZP_07735510.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b]
 gi|315653508|ref|ZP_07906429.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195]
 gi|325912878|ref|ZP_08175256.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B]
 gi|329921336|ref|ZP_08277774.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G]
 gi|259168041|gb|EEW52536.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335]
 gi|308163764|gb|EFO66033.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d]
 gi|308164987|gb|EFO67230.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c]
 gi|308166527|gb|EFO68727.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b]
 gi|308169032|gb|EFO71115.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a]
 gi|308170420|gb|EFO72444.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D]
 gi|311089018|gb|EFQ47459.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b]
 gi|311090481|gb|EFQ48889.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d]
 gi|311092192|gb|EFQ50566.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1]
 gi|311093057|gb|EFQ51406.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a]
 gi|315489199|gb|EFU78840.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195]
 gi|325477871|gb|EGC81005.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B]
 gi|328934628|gb|EGG31132.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G]
          Length = 395

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682
           +G+V ++  FGAF++  G  DGLVHIS++S + + K SDV+K G  V VK++   DDR +
Sbjct: 202 EGKVSRLTGFGAFINVGGV-DGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRR 260

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 261 ISLSIK 266



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G+V  +  FGAF+       GLVH+S++S +RV K SD +K G TV VK+L  D   
Sbjct: 285 VIDGEVKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSD 344

Query: 682 K-IKLSMK 688
           K I LS+K
Sbjct: 345 KRISLSIK 352


>gi|256783809|ref|ZP_05522240.1| transcriptional accessory protein [Streptomyces lividans TK24]
          Length = 780

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 641 KEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKP 699

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT--GKP 697
           GD V VK++D D  R +I L++++ D+    G+P
Sbjct: 700 GDIVKVKVMDVDIPRKRISLTLRLDDEAAPQGEP 733


>gi|310659605|ref|YP_003937326.1| transcriptional accessory protein [Clostridium sticklandii DSM 519]
 gi|308826383|emb|CBH22421.1| transcriptional accessory protein [Clostridium sticklandii]
          Length = 717

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 14/143 (9%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           EFT +VE +++    I   + +G   +R IV E +    +I D+G       ++A I   
Sbjct: 585 EFTSKVEELSL--RDIAQELEIGLPTLRDIVKELSKPGRDIRDEG-------AMAPI--L 633

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R  I  + D+ E+  I +G V  V+DFGAFV      DGLVHISQLS + V    +VV  
Sbjct: 634 RSDILKLEDL-EIGMILQGTVRNVVDFGAFVDIGIKNDGLVHISQLSDKYVKNPMEVVSV 692

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V V+++D D  RGK+ LSMK
Sbjct: 693 GDVVEVRVIDIDRQRGKVSLSMK 715


>gi|311277659|ref|YP_003939890.1| Tex-like protein protein [Enterobacter cloacae SCF1]
 gi|308746854|gb|ADO46606.1| Tex-like protein protein [Enterobacter cloacae SCF1]
          Length = 777

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  R
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLPR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|319891461|ref|YP_004148336.1| RNA binding protein, contains ribosomal protein S1 domain protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161157|gb|ADV04700.1| RNA binding protein, contains ribosomal protein S1 domain protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465369|gb|ADX77522.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius
           ED99]
          Length = 125

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGSKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLTVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS+K
Sbjct: 64  ADDGKISLSIK 74


>gi|308174080|ref|YP_003920785.1| RNA degradation presenting factor [Bacillus amyloliquefaciens DSM
           7]
 gi|307606944|emb|CBI43315.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328912409|gb|AEB64005.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
          Length = 382

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD ++  
Sbjct: 275 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESE 334

Query: 681 GKIKLSMKVVDQ 692
            +I LSM+ +++
Sbjct: 335 ERISLSMRELEE 346



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              D + +K+   +D   I LS + VD +
Sbjct: 62  NVDDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 253

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R +S     L    GS L   G T+ +V  ++     E       G+  
Sbjct: 9   TRSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASV----TEGVPRWRRGSGL 64

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       SR G  S R     RL  R++  V+   A    T+ + +
Sbjct: 65  GWVTSEYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDA 124

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA           G P++  V+ I++G+VK     + +
Sbjct: 125 DVLQADGGTRTASITGAYVALHDAVEWLRERGSLAGEPLTGSVSAISVGIVKG----VPM 180

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ DED    +D  +  T +G
Sbjct: 181 LDLAYDEDSTADVDMNIVATGTG 203


>gi|290955864|ref|YP_003487046.1| transcriptional accessory protein [Streptomyces scabiei 87.22]
 gi|260645390|emb|CBG68476.1| putative transcriptional accessory protein [Streptomyces scabiei
           87.22]
          Length = 794

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGL H+S LS   V    DVVK GD V VK+LD D  R
Sbjct: 660 VLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKVKVLDVDIPR 719

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L++++ D+   K
Sbjct: 720 KRISLTLRLDDEAAPK 735


>gi|225868407|ref|YP_002744355.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus]
 gi|225701683|emb|CAW99009.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp.
           zooepidemicus]
          Length = 400

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+LD    D
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQEVTVKVLDVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA++    +        +  G V ++  FGAF+   G  DGLVH+++LS ER      V
Sbjct: 178 EAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           V  G+ V VK+L  D+  G++ LS+K
Sbjct: 237 VSVGEEVEVKVLALDEEAGRVSLSLK 262


>gi|194015965|ref|ZP_03054580.1| protein YhgF [Bacillus pumilus ATCC 7061]
 gi|194012320|gb|EDW21887.1| protein YhgF [Bacillus pumilus ATCC 7061]
          Length = 719

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD  TVWV  +D   +G
Sbjct: 651 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHPLDVVSVGDIVTVWVDSVD-QAKG 709

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 710 RVALSM 715


>gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822]
 gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis]
          Length = 791

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  R
Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731

Query: 681 GKIKLSMKVVDQNTGKP 697
            ++ L+M++ D  T +P
Sbjct: 732 KRVALTMRLND--TAEP 746


>gi|289767691|ref|ZP_06527069.1| transcriptional accessory protein [Streptomyces lividans TK24]
 gi|289697890|gb|EFD65319.1| transcriptional accessory protein [Streptomyces lividans TK24]
          Length = 787

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 648 KEGVEKISDLSS-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKP 706

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT--GKP 697
           GD V VK++D D  R +I L++++ D+    G+P
Sbjct: 707 GDIVKVKVMDVDIPRKRISLTLRLDDEAAPQGEP 740


>gi|225870666|ref|YP_002746613.1| 30S ribosomal protein S1 [Streptococcus equi subsp. equi 4047]
 gi|225700070|emb|CAW94132.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp. equi
           4047]
          Length = 400

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+LD    D
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQEVTVKVLDVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA++    +        +  G V ++  FGAF+   G  DGLVH+++LS ER      V
Sbjct: 178 EAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           V  G+ V VK+L  D+  G++ LS+K
Sbjct: 237 VSVGEEVEVKVLALDEEAGRVSLSLK 262


>gi|225389317|ref|ZP_03759041.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme
           DSM 15981]
 gi|225044618|gb|EEG54864.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme
           DSM 15981]
          Length = 660

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V ++ DFGAF+      D L+H+SQ+S E V K SDV++ G  +  +++DF++   KI
Sbjct: 573 GRVARMTDFGAFIELEPGVDALLHVSQISREHVEKPSDVLRIGQEIEARVVDFNENDHKI 632

Query: 684 KLSMKVV 690
            LS+K +
Sbjct: 633 SLSIKAL 639


>gi|221068177|ref|ZP_03544282.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
 gi|220713200|gb|EED68568.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
          Length = 793

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ E     +G V  V  FGAFV     +DGLVH+SQ+S + +    +VVK G  
Sbjct: 655 VEDIKDLKE-GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQI 713

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V VK+L+ D DR +I L+MK+
Sbjct: 714 VKVKVLEVDVDRKRISLTMKL 734


>gi|270290203|ref|ZP_06196429.1| S1 RNA binding domain-containing protein [Pediococcus acidilactici
           7_4]
 gi|270281740|gb|EFA27572.1| S1 RNA binding domain-containing protein [Pediococcus acidilactici
           7_4]
          Length = 153

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     R GLVHIS++S   V     V+K GD+V VK+L  
Sbjct: 4   EVGTKVDGKVSGITNFGAFVDLGEHRSGLVHISEVSDSFVKDIHSVLKVGDSVTVKVLSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  ADDGKIALSIR 74


>gi|317401789|gb|EFV82404.1| tex protein [Achromobacter xylosoxidans C54]
          Length = 791

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V  +N +Y G V++     V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV
Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            VK+L+ D  R ++ L+M++ D
Sbjct: 721 SVKVLEVDVARKRVALTMRLND 742


>gi|253690273|ref|YP_003019463.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756851|gb|ACT14927.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 777

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|157691241|ref|YP_001485703.1| RNA binding transcriptional accessory protein [Bacillus pumilus
           SAFR-032]
 gi|157679999|gb|ABV61143.1| RNA binding transcriptional accessory protein [Bacillus pumilus
           SAFR-032]
          Length = 719

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD  TVWV  +D   +G
Sbjct: 651 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHPLDVVSVGDIVTVWVDSVD-QAKG 709

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 710 RVALSM 715


>gi|21672576|ref|NP_660643.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|2500382|sp|Q44653|RS1_BUCAP RecName: Full=30S ribosomal protein S1
 gi|1448954|gb|AAC05429.1| ribosomal protein S1 [Buchnera aphidicola]
 gi|21623204|gb|AAM67854.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 559

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 102/201 (50%), Gaps = 23/201 (11%)

Query: 504 QMDMKIGGISENI--MVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRV-E 554
           Q+D+ +  I +     +++ ++AKR    ++ E +   SE+ + +      G FT  + E
Sbjct: 67  QIDVALDAIEDGFGETLLSREKAKRHEAWLILEQAHEKSETVIGIINGKVKGGFTVELNE 126

Query: 555 IMAIPPDQ------IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           I A  P        +R+ I + GK +   V +   K N      V ++  ++ E E + E
Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAE 181

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + +  + E  +I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD
Sbjct: 182 RDQLLESLQEGIEI-KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGD 239

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            + VK+L FD +R ++ L +K
Sbjct: 240 EINVKILKFDKERTRVSLGLK 260



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHIS----QLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           G++  + DFG F+   G  DGLVH+S    ++S E   K     K+GD +   +L  D +
Sbjct: 369 GKIKSITDFGIFIGLKGGIDGLVHLSDISWKISGEEAVKN---YKKGDEISAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K ++++
Sbjct: 426 RERISLGIKQLEED 439


>gi|330444481|ref|YP_004377467.1| 30S ribosomal protein S1 [Chlamydophila pecorum E58]
 gi|328807591|gb|AEB41764.1| ribosomal protein S1 [Chlamydophila pecorum E58]
          Length = 580

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G  +++++   EIEA   M  + +D+        G V K+  FGAFV      +GL+H+S
Sbjct: 460 GVKQLSANPWDEIEA---MFPAGSDIS-------GVVTKITAFGAFVELQNGIEGLIHVS 509

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +LS +  AK  D++  GDTV  K++  D D  K+ LS+K
Sbjct: 510 ELSEKPFAKVEDIISIGDTVHAKVIKLDPDHKKVSLSVK 548



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+HIS++S  + V   S++V +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNVVDPSEIVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 370 ISLGLKQTEHN 380



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I    E+I  IT    + ++ KG V  + DFG F+   G  DGL+HI+ ++ +R+   S+
Sbjct: 207 ISKKAELIEQIT----IGELRKGIVKNITDFGVFLDLDGI-DGLLHITDMTWKRIRHPSE 261

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 262 MVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           K ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+GD V   +L  D +  
Sbjct: 396 KAEIRNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGDVVEAVILSVDKESK 455

Query: 682 KIKLSMKVVDQN 693
           KI L +K +  N
Sbjct: 456 KITLGVKQLSAN 467


>gi|299530284|ref|ZP_07043709.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
           S44]
 gi|298721655|gb|EFI62587.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
           S44]
          Length = 793

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVH+SQ+S + +    +VVK G  V VK+L+ D DR +
Sbjct: 668 EGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKVLEVDVDRKR 727

Query: 683 IKLSMKV 689
           I L+MK+
Sbjct: 728 ISLTMKL 734


>gi|293604133|ref|ZP_06686541.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
 gi|292817358|gb|EFF76431.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
          Length = 792

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 616 VPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V  +N +Y G V++     V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV
Sbjct: 661 VETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV 720

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            VK+L+ D  R ++ L+M++ D
Sbjct: 721 SVKVLEVDVARKRVALTMRLND 742


>gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
 gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
          Length = 496

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD V+VK++D D
Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVNVGDDVFVKVIDID 354

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 355 LERRRISLSLKQANE 369



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 3/98 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E  +  +RS      +  ++  G V  +++FGAFV   G  DGLVH+S+LS + 
Sbjct: 188 SRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 246

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +    +VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 247 IDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKATQED 284


>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
 gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
 gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16]
          Length = 240

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +++ +   RMDGR    +R+I+ ++GL +   GS     G+T+ +  V  G  E +    
Sbjct: 2   SIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYESKA--- 57

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
           S     R   +  Y+    +  E        R+     RL  +A   V+  T  FP + +
Sbjct: 58  SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVI-LTESFPRSQI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
            I  E+ + DGS+  A V  +SLAL DAG+P+    +    G+V+
Sbjct: 117 DIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVE 161


>gi|319939357|ref|ZP_08013717.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
           1_2_62CV]
 gi|319811343|gb|EFW07638.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
           1_2_62CV]
          Length = 712

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLL 675
           ++ +  +G V  V+DFGAFV      DGL+HIS+LS   V   S VV  GD  TVWV  L
Sbjct: 635 QIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSNSYVKHPSQVVSVGDLVTVWVDKL 694

Query: 676 DFDDRGKIKLSM 687
           D  +R K+ LS+
Sbjct: 695 DI-EREKVNLSL 705


>gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
 gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR  + +R I       +   GS L + GDTQ I   ++    +E     L G  R
Sbjct: 9   IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASI----EESVPPFLRGRGR 64

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       A   R+ G      RL  R+I       A    TLR+  
Sbjct: 65  GWLTAEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDC 124

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A  DA            VP+   VA I++G+++     + +
Sbjct: 125 DVIQADGGTRTASISGVMIAAYDAFSLMVEEGLIEKVPLRHFVAAISVGVIQG----VPM 180

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G    +Q   + G  S +++   L  A++G   +++  
Sbjct: 181 LDLDYQEDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQ 240

Query: 536 SKVL 539
            +VL
Sbjct: 241 KRVL 244


>gi|227112180|ref|ZP_03825836.1| putative RNA binding protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 777

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|154502590|ref|ZP_02039650.1| hypothetical protein RUMGNA_00403 [Ruminococcus gnavus ATCC 29149]
 gi|153796782|gb|EDN79202.1| hypothetical protein RUMGNA_00403 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I  +P +  +  G V  + ++GAFV       GLVH+SQ+S +RV   + V+  GD V V
Sbjct: 124 IASIP-IGTVMSGTVETLQNYGAFVKLENGLSGLVHVSQISQKRVKNPAAVLNVGDEVQV 182

Query: 673 KLLDFDDRGKIKLSMKVV 690
           K++   D GKI LSMK +
Sbjct: 183 KVIGIKD-GKISLSMKAL 199


>gi|170724124|ref|YP_001751812.1| RNA-binding S1 domain-containing protein [Pseudomonas putida W619]
 gi|169762127|gb|ACA75443.1| RNA binding S1 domain protein [Pseudomonas putida W619]
          Length = 774

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ 
Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|322389474|ref|ZP_08063026.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
 gi|321143852|gb|EFX39278.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|296876572|ref|ZP_06900622.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
 gi|296432391|gb|EFH18188.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDIVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 459

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V  + DFGAFV   GA DGLVH+S+LS  RV   S+V+K G+ V V +L  + +  K
Sbjct: 232 RGRVTSITDFGAFVDIGGA-DGLVHLSELSWSRVKHPSEVLKVGEEVDVYVLGINAEEKK 290

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 291 IALSIK 296



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V ++ +FGAF       +GL+H+S+LS +R+     VV EG  + ++++  
Sbjct: 311 EVGQLVLGTVTQLANFGAFARIEDGIEGLIHVSELSEQRIGHPRQVVSEGQDLILRIIRI 370

Query: 678 DD-RGKIKLSMK 688
           D  R ++ LS++
Sbjct: 371 DPARRRMGLSLR 382


>gi|227329718|ref|ZP_03833742.1| putative RNA binding protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 777

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|167957320|ref|ZP_02544394.1| RNA binding S1 domain protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 358

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +E EA ++ +    +   V    +G V  V+DFG FV+  G  +GLVHIS++S ERV  
Sbjct: 181 FSEKEAVKDGLAERFEKLAVGDQVEGVVTGVVDFGVFVNVEGI-EGLVHISEISWERVNN 239

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            SD VK G T+  K++   D+ ++ LSMK + Q+
Sbjct: 240 PSDYVKTGQTIKAKIIAI-DKDRLSLSMKQLTQD 272


>gi|113867443|ref|YP_725932.1| transcriptional accessory protein [Ralstonia eutropha H16]
 gi|113526219|emb|CAJ92564.1| transcriptional accessory protein [Ralstonia eutropha H16]
          Length = 784

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS++ V    +VVK G  V VK+++ D  R
Sbjct: 665 VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSSKFVKDAHEVVKAGQIVKVKVMEVDVKR 724

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ D+
Sbjct: 725 NRIGLSMRLDDE 736


>gi|116669460|ref|YP_830393.1| RNA-binding S1 domain-containing protein [Arthrobacter sp. FB24]
 gi|116609569|gb|ABK02293.1| RNA binding S1 domain protein [Arthrobacter sp. FB24]
          Length = 861

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+     I +G V  V  FGAFV     +DGLVH+S L+   V+   +VVK G
Sbjct: 681 EGIEKISDL-RPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSG 739

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK+L+ D +R +I L++++ D+
Sbjct: 740 QVVRVKVLEADPERKRISLTLRLDDE 765


>gi|325283658|ref|YP_004256199.1| RNA binding S1 domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324315467|gb|ADY26582.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
          Length = 610

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
           ++G VV++ DFG FV+  G  DGLVH S+L+  R     +VV  GD V V+++D D+ R 
Sbjct: 250 FEGTVVEITDFGVFVNLGGI-DGLVHRSELTYGRFNHPREVVAVGDKVKVQVIDVDESRE 308

Query: 682 KIKLSMK 688
           +I LSMK
Sbjct: 309 RINLSMK 315



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           KGQV  + DFG F+      +GL+HIS+L  +RV   +D+ K+GD +   +L+ D
Sbjct: 423 KGQVTGLTDFGVFMEIEEGIEGLIHISELDIQRVNNPADLFKKGDEIEAVILNID 477



 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 13/90 (14%)

Query: 602 EIEAAREMI----RSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +++ +RE I    +S+T+ P         + +  KG+V  + +FGAFV      +GLVH+
Sbjct: 302 DVDESRERINLSMKSLTNDPWEGAMERYSIGQRVKGKVTNLTNFGAFVELEPGLEGLVHV 361

Query: 650 SQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           S++S T+RV   ++V+ EG+     +L  D
Sbjct: 362 SEMSWTKRVRHPNEVLTEGEEAEAVILRMD 391


>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 486

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VVK G+ V+VK++D D
Sbjct: 294 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGEDVFVKVIDID 353

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 354 LERRRISLSLKQANE 368



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G +  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 211 QVRDGVISSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLDVDMD 269

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 270 RERVSLSLKATQED 283


>gi|262404268|ref|ZP_06080823.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
 gi|262349300|gb|EEY98438.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|154483595|ref|ZP_02026043.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC
           27560]
 gi|149735505|gb|EDM51391.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC
           27560]
          Length = 365

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 9/96 (9%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           +AE EAA+   +++ +  EV +   G V  V+DFGAF+   GA DGL+HIS++S  RV  
Sbjct: 176 VAEKEAAK---KALFEKIEVGQTVTGVVKSVVDFGAFIDIGGA-DGLLHISEMSWGRVGN 231

Query: 660 TSDVVKEGD--TVWVKLLDFDDRGKIKLSMKVVDQN 693
              + K GD  T ++K ++ D   KI LS+K  D N
Sbjct: 232 PRKLFKPGDEVTAFIKEINGD---KIALSLKFEDTN 264



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ++   V K SD +  G  +  K++DF+
Sbjct: 275 VGVVVTGKVARMTDFGAFVEIEPGVDALLHVSQIANHHVDKPSDELTIGQEIEAKIVDFN 334

Query: 679 -DRGKIKLSMKVV 690
            +  KI LSMK +
Sbjct: 335 EEEKKISLSMKAL 347


>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
 gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
          Length = 245

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 34/219 (15%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R + A++ +  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKS 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-- 418
            +  ++   Q       Y+    +T E        RR  G  + +  ++H  L QT +  
Sbjct: 66  LHDRAIINCQ-------YSMATFSTAE------RKRRPHGDRKSSEMSLH--LKQTFEAA 110

Query: 419 -----FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
                +P + + I  +I ++DG +  A V  ++LAL+DAG+P+   V   + G V+D   
Sbjct: 111 VLTELYPRSQIDIYVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVED--- 167

Query: 473 FIILSDISGDEDHLGHMDFKVA--GTDSGITAMQMDMKI 509
              L+D+   E+  G     +A       I  +QMD ++
Sbjct: 168 -TPLADLCHAEESGGGTALALALLPRSGNIALLQMDARL 205


>gi|27366257|ref|NP_761785.1| 30S ribosomal protein S1 [Vibrio vulnificus CMCP6]
 gi|27362458|gb|AAO11312.1| ribosomal protein S1 [Vibrio vulnificus CMCP6]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|37679484|ref|NP_934093.1| 30S ribosomal protein S1 [Vibrio vulnificus YJ016]
 gi|320156766|ref|YP_004189145.1| 30S ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
 gi|37198228|dbj|BAC94064.1| ribosomal protein S1 [Vibrio vulnificus YJ016]
 gi|319932078|gb|ADV86942.1| SSU ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N]
 gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N]
          Length = 790

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  R
Sbjct: 672 LLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVQR 731

Query: 681 GKIKLSMKVVDQ 692
            ++ L+M++ D 
Sbjct: 732 KRVALTMRLNDN 743


>gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis]
 gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis]
          Length = 616

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I S+ D+     I +G V  V +FGAFV     +DGLVHIS LS   V    DVV+ 
Sbjct: 380 QEGINSLNDLTP-GMILEGVVTNVANFGAFVDVGVHQDGLVHISALSETFVKDPRDVVRV 438

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G TV VK+ + D  R +I L+M++ D +  K
Sbjct: 439 GQTVKVKVQEVDVARKRIGLTMRLNDDSAPK 469


>gi|182414675|ref|YP_001819741.1| ribosomal protein S1 [Opitutus terrae PB90-1]
 gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1]
          Length = 557

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V K+  FGAFV      DGLVHISQ+S ER+ K  DV+K G  V  +++  D
Sbjct: 445 IGDVVTGTVTKLTSFGAFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKID 504

Query: 679 -DRGKIKLSMKVVD 691
            +  ++ LS+K  +
Sbjct: 505 REERRLGLSIKAAN 518



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R++ D  +  +I +G V  + DFGAF+   G  DGL+HI+ +S  R++  S+++K+G+ V
Sbjct: 178 RALLDSIQPGQIRRGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRISHPSEMLKQGEEV 236

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            V +++ + ++ ++ L +K   +N
Sbjct: 237 QVMIIEVNREKERVSLGLKQTTKN 260



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  +  +GAF+      DG+VH+S +S T +V   S+++K+GD V   +LD D  + 
Sbjct: 363 RGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ 422

Query: 682 KIKLSMK 688
           +I L MK
Sbjct: 423 RISLGMK 429



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 38/161 (23%)

Query: 571 GKVIRGIVEQT---GAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITDVP--------- 617
           G++ RG+V+     GA +++D  DG + I   S   I    EM++   +V          
Sbjct: 187 GQIRRGVVKNITDFGAFIDLDGMDGLLHITDMSWGRISHPSEMLKQGEEVQVMIIEVNRE 246

Query: 618 -----------------EVNKIY------KGQVVKVMDFGAFVHFCGARDGLVHISQLS- 653
                            E+++ Y       G+VV ++ +GAFV      +GLVHI+++S 
Sbjct: 247 KERVSLGLKQTTKNPWDEIDRKYPVGAKVHGKVVNLVPYGAFVEIEPGVEGLVHITEMSW 306

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           T+R+ K S+++K G  +   +L    +  KI L ++ ++ N
Sbjct: 307 TKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLEPN 347


>gi|24379626|ref|NP_721581.1| 30S ribosomal protein S1 [Streptococcus mutans UA159]
 gi|290580374|ref|YP_003484766.1| putative ribosomal protein S1 [Streptococcus mutans NN2025]
 gi|24377577|gb|AAN58887.1|AE014956_8 putative ribosomal protein S1; sequence specific DNA-binding
           protein [Streptococcus mutans UA159]
 gi|254997273|dbj|BAH87874.1| putative ribosomal protein S1 [Streptococcus mutans NN2025]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+LD +   
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTAD 340

Query: 682 -KIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G V ++  FGAF+   G  DGLVHI++LS ER      VV  G+ + VK+L  D
Sbjct: 193 VGDIVTGTVARLTSFGAFIDLGGV-DGLVHITELSHERNVSPKSVVTVGEEIQVKVLAID 251

Query: 679 DR-GKIKLSMK 688
           +  G++ LS+K
Sbjct: 252 EEAGRVSLSLK 262


>gi|169825145|ref|YP_001692756.1| transcription accessory protein [Finegoldia magna ATCC 29328]
 gi|167831950|dbj|BAG08866.1| transcription accessory protein [Finegoldia magna ATCC 29328]
          Length = 697

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689
            DTV VK++  D +RG + LSMK+
Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMKL 697


>gi|83950988|ref|ZP_00959721.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM]
 gi|83838887|gb|EAP78183.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM]
          Length = 794

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I SITD+ +     +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 638 EGIDSITDL-KPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 696

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V V++ + D  R +I LSM+
Sbjct: 697 DVVRVRVTEIDVPRKRIGLSMR 718


>gi|319947109|ref|ZP_08021343.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
 gi|319747157|gb|EFV99416.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|289523537|ref|ZP_06440391.1| general stress protein 13 [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503229|gb|EFD24393.1| general stress protein 13 [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 155

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +VN++ K  V ++  +GAFV     + G++HIS++S   V K  DV+  G  V  K++ 
Sbjct: 23  AKVNEVVKCVVERITPYGAFVKIQNGQRGMIHISEISQGYVKKVEDVLSLGQEVEAKVIK 82

Query: 677 FDDRGKIKLSMKVV 690
            D+RG+I LS+K +
Sbjct: 83  IDERGRIDLSLKAL 96


>gi|123232500|emb|CAM19184.1| zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|123858148|emb|CAM25095.1| zinc finger, CCHC domain containing 17 [Mus musculus]
          Length = 186

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 2   GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 56


>gi|153825197|ref|ZP_01977864.1| ribosomal protein S1 [Vibrio cholerae MZO-2]
 gi|149741176|gb|EDM55227.1| ribosomal protein S1 [Vibrio cholerae MZO-2]
          Length = 544

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 172 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 226

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 227 DEILVKVLKFDRDRTRVSLGLK 248



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 263 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 321

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 322 DIDEERRRISLGLKQCKAN 340


>gi|328542586|ref|YP_004302695.1| cytochrome c oxidase, subunit I [polymorphum gilvum SL003B-26A1]
 gi|326412332|gb|ADZ69395.1| Cytochrome c oxidase, subunit I [Polymorphum gilvum SL003B-26A1]
          Length = 803

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E +  I+D+    K+ +G V  V +FGAFV     +DGLVH+SQL+   V     VV
Sbjct: 658 ALQEGVEEISDLKPGMKL-EGTVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVDDPHKVV 716

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMK 688
           K GD V V +L+ D  R +I LSM+
Sbjct: 717 KAGDIVSVTVLEVDQKRKRISLSMR 741


>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
           kowalevskii]
          Length = 198

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 22/174 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D  + E +R  S +  LL R  GS+ + +GDT  IV V  G  E +Q  +        
Sbjct: 5   RADCGNLE-LRSQSCEQNLLSRPDGSATYCQGDTSVIVAV-YGPAEVKQSKE-------- 54

Query: 373 DFMMHYNFLPCATGEV---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                  FL  AT EV    ++G P   E    RL R     ++        ++ I+ ++
Sbjct: 55  -------FLDKATLEVIFKPKVGIPGCSEKFQERLIRNTCETIVLTALHPRSSINIIIQV 107

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
             + GS     V  + +AL+DAG+P+S  VA +   L  DGD  IIL   S  E
Sbjct: 108 MHNAGSLLSCCVNSTCMALLDAGLPMSCLVAAVTCSLSCDGD--IILDPTSQQE 159


>gi|160877436|ref|YP_001556752.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS195]
 gi|160862958|gb|ABX51492.1| RNA binding S1 domain protein [Shewanella baltica OS195]
 gi|315269638|gb|ADT96491.1| Tex-like protein protein-like protein [Shewanella baltica OS678]
          Length = 787

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++
Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712

Query: 677 FD-DRGKIKLSMKV---VDQNTGK 696
            D +R +I LSM++   +DQ+  +
Sbjct: 713 VDVERRRIGLSMRLDEAIDQSKSQ 736


>gi|28867558|ref|NP_790177.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971032|ref|ZP_03399153.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301385595|ref|ZP_07234013.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058821|ref|ZP_07250362.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302132150|ref|ZP_07258140.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850793|gb|AAO53872.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924268|gb|EEB57842.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1]
 gi|331014861|gb|EGH94917.1| S1 RNA binding domain protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 773

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEIDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|15641917|ref|NP_231549.1| 30S ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147673739|ref|YP_001217448.1| 30S ribosomal protein S1 [Vibrio cholerae O395]
 gi|227082045|ref|YP_002810596.1| ribosomal protein S1 [Vibrio cholerae M66-2]
 gi|229507989|ref|ZP_04397494.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
 gi|229515301|ref|ZP_04404761.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
 gi|229518911|ref|ZP_04408354.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
 gi|229521837|ref|ZP_04411254.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
 gi|229523935|ref|ZP_04413340.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
 gi|229529059|ref|ZP_04418449.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
 gi|229607535|ref|YP_002878183.1| 30S ribosomal protein S1 [Vibrio cholerae MJ-1236]
 gi|254286724|ref|ZP_04961678.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
 gi|254849003|ref|ZP_05238353.1| ribosomal protein S1 [Vibrio cholerae MO10]
 gi|255745326|ref|ZP_05419275.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
 gi|9656450|gb|AAF95063.1| ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|146315622|gb|ABQ20161.1| ribosomal protein S1 [Vibrio cholerae O395]
 gi|150423151|gb|EDN15098.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
 gi|227009933|gb|ACP06145.1| ribosomal protein S1 [Vibrio cholerae M66-2]
 gi|227013813|gb|ACP10023.1| ribosomal protein S1 [Vibrio cholerae O395]
 gi|229332833|gb|EEN98319.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
 gi|229337516|gb|EEO02533.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
 gi|229340762|gb|EEO05767.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
 gi|229343600|gb|EEO08575.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
 gi|229348006|gb|EEO12965.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
 gi|229355494|gb|EEO20415.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
 gi|229370190|gb|ACQ60613.1| SSU ribosomal protein S1p [Vibrio cholerae MJ-1236]
 gi|254844708|gb|EET23122.1| ribosomal protein S1 [Vibrio cholerae MO10]
 gi|255737156|gb|EET92552.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
 gi|327484459|gb|AEA78866.1| SSU ribosomal protein S1p [Vibrio cholerae LMA3894-4]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|303238373|ref|ZP_07324908.1| Tex-like protein-like protein [Acetivibrio cellulolyticus CD2]
 gi|302594077|gb|EFL63790.1| Tex-like protein-like protein [Acetivibrio cellulolyticus CD2]
          Length = 718

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 613 ITDVPEVNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +TDV ++  +  G V+      V DFGAFV     +DGLVHIS+L    V    +VV  G
Sbjct: 634 LTDVLDIEDLRPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISELCDRYVKSPMEVVAVG 693

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V V++LD +  R +I LSMK ++
Sbjct: 694 DIVKVRILDVEVQRKRISLSMKEIN 718


>gi|302379353|ref|ZP_07267840.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312698|gb|EFK94692.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 697

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689
            DTV VK++  D +RG + LSMK+
Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMKL 697


>gi|330890971|gb|EGH23632.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 774

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 652 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 711

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 712 KRVGLSMRMSD 722


>gi|320093717|ref|ZP_08025582.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979338|gb|EFW10828.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 479

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 207 QVRTGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 265

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 266 RERVSLSLKATQED 279



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   +     VVK  + V+VK++D D
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHIELPDQVVKVNEEVFVKVIDID 349

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 350 LDRRRISLSLK 360


>gi|300703935|ref|YP_003745537.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
 gi|299071598|emb|CBJ42922.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
          Length = 780

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 666 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 725

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ D+    P
Sbjct: 726 NRIGLTMRLSDEPGQAP 742


>gi|258621309|ref|ZP_05716343.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
 gi|258625367|ref|ZP_05720264.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
 gi|262171091|ref|ZP_06038769.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
 gi|258582358|gb|EEW07210.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
 gi|258586697|gb|EEW11412.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
 gi|261892167|gb|EEY38153.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|229587823|ref|YP_002869942.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens
           SBW25]
 gi|229359689|emb|CAY46537.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens
           SBW25]
          Length = 774

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|323339401|ref|ZP_08079684.1| YhgF like protein [Lactobacillus ruminis ATCC 25644]
 gi|323093166|gb|EFZ35755.1| YhgF like protein [Lactobacillus ruminis ATCC 25644]
          Length = 727

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 24/160 (15%)

Query: 537 KVLSESRLQLGEFTPRV---EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           ++L+E+ ++  E + +    ++    P    N  G G + +  IVE            ++
Sbjct: 577 RLLTETGIKNAELSTKAGLEKLSCFDPQAFANKTGAGVQTVEDIVE------------SL 624

Query: 594 KIASSSLAEIEAAREMIRS----ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           K     L +    + ++RS    + D+ E  K+ +G V  V+DFGAFV     +DGLVH+
Sbjct: 625 KKPGRDLRD-SMQKPLLRSDVLHLEDLKEGMKL-QGTVRNVVDFGAFVDIGVKQDGLVHV 682

Query: 650 SQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSM 687
           S+L    V   SDVV  GD   VW+  +D + RG+I+L+M
Sbjct: 683 SKLKKGFVKNPSDVVSVGDIVDVWIDSVD-EKRGRIQLTM 721


>gi|222056100|ref|YP_002538462.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
 gi|221565389|gb|ACM21361.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
          Length = 756

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E    R+ + +I D+ E   I +G V  V  FGAFV     +DGLVH+S LS   V + S
Sbjct: 632 ETATLRDDVTTIGDLQE-GMILQGTVTNVAAFGAFVDIGVHQDGLVHVSHLSRRFVREAS 690

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + VK G+ V VK+L  D  R +I LS+K
Sbjct: 691 EAVKVGEIVKVKVLAVDLQRKRISLSIK 718


>gi|329904248|ref|ZP_08273723.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548072|gb|EGF32801.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 781

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  V  FGAFV     +DGLVHIS LS   V     VVK G  V VK+L+ D+ R
Sbjct: 665 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKAGQVVRVKVLEVDEKR 724

Query: 681 GKIKLSMKVVD 691
            +I L+M++ D
Sbjct: 725 KRIALTMRLTD 735


>gi|315180636|gb|ADT87550.1| 30S ribosomal protein S1 [Vibrio furnissii NCTC 11218]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|312867675|ref|ZP_07727881.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
 gi|311096738|gb|EFQ54976.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G  V VK+L+    D
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|304412251|ref|ZP_07393859.1| Tex-like protein [Shewanella baltica OS183]
 gi|307306035|ref|ZP_07585780.1| Tex-like protein [Shewanella baltica BA175]
 gi|304349286|gb|EFM13696.1| Tex-like protein [Shewanella baltica OS183]
 gi|306910908|gb|EFN41335.1| Tex-like protein [Shewanella baltica BA175]
          Length = 787

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++
Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712

Query: 677 FD-DRGKIKLSMKV---VDQN 693
            D +R +I LSM++   +DQ+
Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733


>gi|283850541|ref|ZP_06367829.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
 gi|283574112|gb|EFC22084.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
          Length = 714

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     RDG+VH+SQL+   V+  ++VV     VWV++++ D +RG+I
Sbjct: 641 GLVTNVTRFGAFVDIGVHRDGMVHVSQLADRFVSDPAEVVSVSREVWVRVVEIDLERGRI 700

Query: 684 KLSMK 688
            LS++
Sbjct: 701 GLSLR 705


>gi|261210556|ref|ZP_05924849.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
 gi|260840341|gb|EEX66912.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|261366361|ref|ZP_05979244.1| protein YhgF [Subdoligranulum variabile DSM 15176]
 gi|282571964|gb|EFB77499.1| protein YhgF [Subdoligranulum variabile DSM 15176]
          Length = 719

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHISQ+S   +    +V+K GD V VK+L  D  + +I
Sbjct: 653 GTVRNVIDFGAFVDLGVHQDGLVHISQISNRFIKHPREVLKVGDIVKVKVLSVDVAKKRI 712

Query: 684 KLSMK 688
            L+MK
Sbjct: 713 ALTMK 717


>gi|171910224|ref|ZP_02925694.1| 30S ribosomal protein S1 [Verrucomicrobium spinosum DSM 4136]
          Length = 557

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG+V K+  FGAFV      DGLVHISQLS + V +  DV+  GD V  +++  
Sbjct: 442 KVGDLVKGRVAKIASFGAFVELEDDIDGLVHISQLSEDHVNRVKDVLNVGDEVEARVIKV 501

Query: 678 DD-RGKIKLSMKVVD 691
           D    +I LS+K V+
Sbjct: 502 DKVERRIGLSVKAVN 516



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 11/151 (7%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  +I  IPP  +   +G        + E    KVN D+   + ++   + E E A +
Sbjct: 123 FLPGSQIDIIPPRDLNEYVGK-------VYEFKIVKVN-DERKNIVLSRREVIEAERAEQ 174

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + +  V   +K+ +G V  + DFG FV   G  DGL+HI+ ++  R+   S++V  G 
Sbjct: 175 RQKFLESVKPGDKV-EGIVKNITDFGVFVDLNGM-DGLLHITDMTWGRLNHPSELVAIGQ 232

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            + V++L+ + ++ ++ L +K +  N  + I
Sbjct: 233 KLNVQILEVNREKERVSLGLKQMQSNPWESI 263



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           SI +   V +   G V K++ +GAFV      +GL+H+S+LS T+R+A+ SDV+  G  V
Sbjct: 262 SIENRYPVGQRVHGTVTKLVAYGAFVEVEEGVEGLIHVSELSWTKRIARPSDVLTVGQKV 321

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
             ++L  + +  KI L ++ +D N
Sbjct: 322 DAQVLGINKEERKISLGVRQLDTN 345



 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
           KG+V  +  +GAFV      DG++H+S LS T ++   S+V+K+G  V   +L+ D    
Sbjct: 361 KGKVRNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVLKKGQEVEATILEIDKANQ 420

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 421 RISLGIK 427


>gi|121591424|ref|ZP_01678703.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
 gi|121546719|gb|EAX56895.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
          Length = 542

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 170 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 224

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 225 DEILVKVLKFDRDRTRVSLGLK 246



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 261 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 319

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 320 DIDEERRRISLGLKQCKAN 338


>gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I]
 gi|34978385|sp|Q45388|TEX_BORPE RecName: Full=Protein tex
 gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I]
 gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS]
          Length = 791

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  R
Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731

Query: 681 GKIKLSMKVVD 691
            ++ L+M++ D
Sbjct: 732 KRVALTMRLND 742


>gi|262166045|ref|ZP_06033782.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
 gi|262025761|gb|EEY44429.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
          Length = 556

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 249

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +E +R +       +   GS     GDT+ +  V++    +++    + GT  
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSI----EDKVPPFMKGTGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR-----REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 YN LP +T E  ++   +R     R +   RL  RA+  V+   A    TL I 
Sbjct: 57  GWITAEYNMLPRST-ETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +    + G+ +AL+DA             PI   VA +++G+V +      
Sbjct: 116 CDVIQADGGTRTTAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEK---- 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED    +D  +  TD G
Sbjct: 172 ILDLCYQEDSKAKVDMNIIMTDEG 195


>gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B]
 gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund
           17B]
          Length = 249

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +E +R +       +   GS     GDT+ +  V++    +++    + GT  
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSI----EDKVPPFMKGTGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR-----REIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 YN LP +T E  ++   +R     R +   RL  RA+  V+   A    TL I 
Sbjct: 57  GWITAEYNMLPRST-ETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +    + G+ +AL+DA             PI   VA +++G+V +      
Sbjct: 116 CDVIQADGGTRTTAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEK---- 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED    +D  +  TD G
Sbjct: 172 ILDLCYQEDSKAKVDMNIIMTDEG 195


>gi|303233848|ref|ZP_07320501.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302495043|gb|EFL54796.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 697

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+ E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 615 RQDVLSIDDLEE-GMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689
            DTV VK++  D +RG + LSMK+
Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMKL 697


>gi|255021289|ref|ZP_05293338.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
 gi|254969300|gb|EET26813.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
          Length = 573

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAF+   G  DGL+HI+ +   RV   S+VV  GD V V +L FD +R
Sbjct: 203 ILEGVVKNLTDYGAFIDLGGI-DGLLHITDMGWRRVKHPSEVVSAGDEVRVMVLKFDRER 261

Query: 681 GKIKLSMKVVDQNTGKPI 698
           G+I L MK + ++  + I
Sbjct: 262 GRISLGMKQLGEDPWQDI 279



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGL+H+S LS +R  + +    K+GD +   +L  D +R +
Sbjct: 378 GQIKSITDFGVFIGLEGGIDGLIHLSDLSWDRPGEEAVRDFKKGDELEAVVLSIDPERER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443



 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  +I+ G+V  + D+GAFV      +GLVH+S++  T +    +  +  G  V V +L
Sbjct: 284 PEGTRIF-GKVTNITDYGAFVEIEEGVEGLVHVSEIDWTNKNLNPAKALHLGQEVEVMVL 342

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 343 DIDEERRRISLGIK 356


>gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3]
          Length = 256

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 28/249 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQ 370
            R  GR ++ +RDI    G  +   GS L   GDT+ +   T+     E+ V   L G+ 
Sbjct: 17  TRPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATV-----ERGVPRFLRGSG 71

Query: 371 RNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT    G  +  G    R +   RL  R++   L        T+ + 
Sbjct: 72  SGWVTAEYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLD 131

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+ +A++DA             G P+ + +A I++G+ KD    
Sbjct: 132 CDVLQADGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEP-- 189

Query: 474 IILSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             + D+  DED     D  V  T D G   +Q   +    +++ M+  L  A++G   I 
Sbjct: 190 --VLDLDYDEDSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIA 247

Query: 533 NEMSKVLSE 541
              +  L++
Sbjct: 248 ALQTAALAD 256


>gi|261823333|ref|YP_003261439.1| hypothetical protein Pecwa_4104 [Pectobacterium wasabiae WPP163]
 gi|261607346|gb|ACX89832.1| Tex-like protein protein-like protein [Pectobacterium wasabiae
           WPP163]
          Length = 777

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  R
Sbjct: 652 ILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|153002700|ref|YP_001368381.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS185]
 gi|151367318|gb|ABS10318.1| RNA binding S1 domain protein [Shewanella baltica OS185]
          Length = 787

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++
Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712

Query: 677 FD-DRGKIKLSMKV---VDQN 693
            D +R +I LSM++   +DQ+
Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733


>gi|306836392|ref|ZP_07469370.1| YhgF like protein [Corynebacterium accolens ATCC 49726]
 gi|304567752|gb|EFM43339.1| YhgF like protein [Corynebacterium accolens ATCC 49726]
          Length = 774

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+     + +G V  V  FGAFV     +DGLVH+S +S + V+   +VV+ 
Sbjct: 628 KEGVHKVSDLTP-GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSHQFVSDPHEVVRS 686

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V VK+++ D DR +I LS++ +D   G+P
Sbjct: 687 GQVVKVKVMEVDVDRQRIGLSLR-LDDEPGQP 717


>gi|320007277|gb|ADW02127.1| Tex-like protein [Streptomyces flavogriseus ATCC 33331]
          Length = 808

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK++D D  R
Sbjct: 653 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKVKVMDVDIPR 712

Query: 681 GKIKLSMKVVDQNT 694
            ++ L++++ D+ T
Sbjct: 713 KRVSLTLRLDDEAT 726


>gi|56962592|ref|YP_174318.1| transcriptional accessory protein [Bacillus clausii KSM-K16]
 gi|56908830|dbj|BAD63357.1| transcriptional accessory protein [Bacillus clausii KSM-K16]
          Length = 720

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  ++DFGAFV     +DGLVH+S+LS   +    +VV  GD  TVWV+ +D + +G
Sbjct: 650 QGTVRNIVDFGAFVDIGVKQDGLVHVSKLSDRYIKHPMEVVSIGDVVTVWVEDVD-EKKG 708

Query: 682 KIKLSMK 688
           +I L+MK
Sbjct: 709 RISLTMK 715


>gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50]
 gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50]
          Length = 791

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  R
Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731

Query: 681 GKIKLSMKVVD 691
            ++ L+M++ D
Sbjct: 732 KRVALTMRLND 742


>gi|317151867|ref|YP_004119915.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942118|gb|ADU61169.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 732

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ E  ++  G V  V  FGAFV     RDGLVH+SQL+   V   S+VV  G
Sbjct: 644 ENVSDIKDLREGMRL-PGIVTNVTKFGAFVDVGVHRDGLVHVSQLADRFVRDPSEVVAAG 702

Query: 668 DTVWVKLLDFDD-RGKIKLSMK 688
             V V ++  D  RG+I LSMK
Sbjct: 703 REVMVTVIGLDQKRGRINLSMK 724


>gi|311895331|dbj|BAJ27739.1| putative transcription accessory protein [Kitasatospora setae
           KM-6054]
          Length = 779

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ +  I+D+ EV  + +G V  V  FGAFV     +DGLVH+S LS   V    +VVK 
Sbjct: 638 KDGVEKISDL-EVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSRNFVKDPREVVKP 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V  K+   D  R +I L++++ D  T  P
Sbjct: 697 GDIVRAKVTAVDVQRKRIGLTLRLDDDTTPGP 728


>gi|260768940|ref|ZP_05877874.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
 gi|260616970|gb|EEX42155.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
          Length = 556

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|154686535|ref|YP_001421696.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens FZB42]
 gi|154352386|gb|ABS74465.1| YpfD [Bacillus amyloliquefaciens FZB42]
          Length = 382

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG TV VK+LD ++  
Sbjct: 275 VLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNESE 334

Query: 681 GKIKLSMKVVDQ 692
            +I LSM+ +++
Sbjct: 335 ERISLSMRELEE 346



 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVV 664
             EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV
Sbjct: 2   TEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIVNVKQSGIIPISELSSLHVEKASDVV 61

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  D + +K+   +D   I LS + VD +
Sbjct: 62  KVDDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|217975273|ref|YP_002360024.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS223]
 gi|217500408|gb|ACK48601.1| RNA binding S1 domain protein [Shewanella baltica OS223]
          Length = 787

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++
Sbjct: 655 PEM--VLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVME 712

Query: 677 FD-DRGKIKLSMKV---VDQN 693
            D +R +I LSM++   +DQ+
Sbjct: 713 VDVERRRIGLSMRLDEAIDQS 733


>gi|146296242|ref|YP_001180013.1| RNA-binding S1 domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409818|gb|ABP66822.1| RNA binding S1 domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 141

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V  +  FGAFV       GLVHIS+++ E V      +KE  TV VK+LD  + G
Sbjct: 27  VVEGKVKSITKFGAFVELPTGVVGLVHISEIANEYVDDIRKYLKEQQTVKVKVLDIKENG 86

Query: 682 KIKLSMKVVDQ 692
           KI LS+K V++
Sbjct: 87  KISLSIKKVNE 97


>gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I]
          Length = 791

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  R
Sbjct: 672 VLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVAR 731

Query: 681 GKIKLSMKVVD 691
            ++ L+M++ D
Sbjct: 732 KRVALTMRLND 742


>gi|289646444|ref|ZP_06477787.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 773

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|257481800|ref|ZP_05635841.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|320322223|gb|EFW78319.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331861|gb|EFW87799.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873008|gb|EGH07157.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|331009434|gb|EGH89490.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 773

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|254522654|ref|ZP_05134709.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
 gi|219720245|gb|EED38770.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
          Length = 795

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 7/102 (6%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +AAR  E +  I D+ E   + +G V  V  FGAFV     +DGL+HIS LS   V  
Sbjct: 641 EFKAARFAEGVEDIKDLRE-GMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKD 699

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697
             +VVK GD V VK+L+ D  R +I L+ ++ D   Q T +P
Sbjct: 700 PREVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741


>gi|160936405|ref|ZP_02083774.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440688|gb|EDP18426.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC
           BAA-613]
          Length = 663

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E V K +DV++ G  +  +++DF+
Sbjct: 567 VGNVVYGRVARMTDFGAFVELEPGVDALLHVSQISREHVEKPADVLRIGQEIEARVVDFN 626

Query: 679 DRG-KIKLSMKVV 690
           +   KI LS+K +
Sbjct: 627 EADHKISLSIKAM 639



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V  V DFGAF+   GA DGL+HIS++S  RV     V K GD V V + D     KI 
Sbjct: 490 GTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKAGDQVRVLIKDIQGE-KIA 547

Query: 685 LSMKVVDQN 693
           LS+K  + N
Sbjct: 548 LSLKFPEAN 556


>gi|167031288|ref|YP_001666519.1| RNA-binding S1 domain-containing protein [Pseudomonas putida GB-1]
 gi|166857776|gb|ABY96183.1| RNA binding S1 domain protein [Pseudomonas putida GB-1]
          Length = 774

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 EPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 245

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ AG     PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  V  T SG
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSG 196


>gi|284044326|ref|YP_003394666.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
 gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
          Length = 529

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D   V    +G+V KV+ FGAFV      +GLVHIS+L+   V    ++++  D V V
Sbjct: 292 VVDTYNVGDELEGRVTKVVTFGAFVEILDGVEGLVHISELAQHHVENPREIIQPNDEVKV 351

Query: 673 KLLDFD-DRGKIKLSMKVVD 691
           K+L+ D +R ++ LS+K V+
Sbjct: 352 KILEIDSERRRLSLSIKRVE 371


>gi|260773187|ref|ZP_05882103.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
 gi|260612326|gb|EEX37529.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
          Length = 556

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +++  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHRL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVDVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|227891239|ref|ZP_04009044.1| S1 domain RNA-binding protein [Lactobacillus salivarius ATCC 11741]
 gi|227867113|gb|EEJ74534.1| S1 domain RNA-binding protein [Lactobacillus salivarius ATCC 11741]
          Length = 723

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVH+S+LS + V+   DVV  G   TVWV+ +D  +R 
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVTVWVEDVDL-NRR 712

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 713 RIQLTM 718


>gi|254518912|ref|ZP_05130968.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium sp.
           7_2_43FAA]
 gi|226912661|gb|EEH97862.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium sp.
           7_2_43FAA]
          Length = 635

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV++ DFGAFV      DGLVHIS+++ +R+    DV+K GD V   +L  D +  KI
Sbjct: 568 GKVVRISDFGAFVELEPGVDGLVHISKITHDRINNPGDVLKIGDEVKAIILSVDAENKKI 627

Query: 684 KLSMK 688
            LS+K
Sbjct: 628 ALSIK 632



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + K +V +  +FGAF    G  DGL+H+SQ+S   V     V+K+G  + VK+++ D
Sbjct: 477 VGDVVKAEVKRFTNFGAFADINGV-DGLIHLSQISWSHVKSAESVLKKGQIIDVKIIEAD 535

Query: 679 -DRGKIKLSMKVV 690
            +  ++ LS+K +
Sbjct: 536 RENNRLSLSIKAL 548


>gi|71737579|ref|YP_272550.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558132|gb|AAZ37343.1| S1 RNA binding domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 773

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|330986824|gb|EGH84927.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 773

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1P [Intrasporangium calvum DSM 43043]
 gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043]
          Length = 493

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S  A +E  +  +R+ T + E+ K  + +G V  +++FGAFV   G  DGLVH+S+LS +
Sbjct: 188 SRRAWLEQTQSEVRT-TFLKELQKGQVRQGVVSSIVNFGAFVDLGGV-DGLVHVSELSWK 245

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 246 HIDHPSEVVEVGTDVTVEVLDVDMDRERVSLSLKATQED 284



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV   D ++VK++D D
Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQVVNVADEIFVKVIDID 354

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 355 LERRRISLSLK 365


>gi|34765734|gb|AAQ82439.1| unknown [Pseudomonas syringae pv. syringae]
          Length = 343

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 222 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 281

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 282 KRVGLSMRMSD 292


>gi|50086361|ref|YP_047871.1| hypothetical protein ACIAD3386 [Acinetobacter sp. ADP1]
 gi|49532337|emb|CAG70049.1| conserved hypothetical protein; putative RNA binding protein,
           contains S1 domain [Acinetobacter sp. ADP1]
          Length = 796

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE I  I  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK 
Sbjct: 642 REDITEIAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKP 700

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V V+++  D +R ++ LSM+
Sbjct: 701 GQIVQVRVIQVDAERKRVNLSMR 723


>gi|312865889|ref|ZP_07726110.1| Tex-like protein N-terminal domain protein [Streptococcus downei
           F0415]
 gi|311098293|gb|EFQ56516.1| Tex-like protein N-terminal domain protein [Streptococcus downei
           F0415]
          Length = 710

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLL 675
           EV +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +
Sbjct: 633 EVGQKLEGTVRNVVDFGAFVDVGVHEDGLIHISEMSKNFVKHPSQVVSVGDIVTVWVSKV 692

Query: 676 DFDDRGKIKLSM 687
           D  +R K+ LS+
Sbjct: 693 DL-NREKLNLSL 703


>gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
 gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
          Length = 254

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +SV+  I  KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 1   MSVWSTILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 55  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++ +ED     D  V  + +G
Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 85  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198

Query: 174 --LDLFVSGTQDAV 185
             +++ +SG  D V
Sbjct: 199 TDMNVVMSGNGDFV 212


>gi|298485218|ref|ZP_07003311.1| transcriptional accessory factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160206|gb|EFI01234.1| transcriptional accessory factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 773

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|289577757|ref|YP_003476384.1| Tex-like protein [Thermoanaerobacter italicus Ab9]
 gi|289527470|gb|ADD01822.1| Tex-like protein [Thermoanaerobacter italicus Ab9]
          Length = 712

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVHIS++S   +    DVV  GD V VK+L  D +R +I
Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVKVKVLSVDLERNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|159477693|ref|XP_001696943.1| polyprotein of PSRP-7 and EF-Ts, imported to chloroplast
           [Chlamydomonas reinhardtii]
 gi|158274855|gb|EDP00635.1| polyprotein of PSRP-7 and EF-Ts, imported to chloroplast
           [Chlamydomonas reinhardtii]
          Length = 1013

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + DV E ++ Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V V
Sbjct: 58  LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D ++ ++ L +K
Sbjct: 117 KVLSVDAEKKRVSLELK 133


>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
 gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
          Length = 372

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 16/230 (6%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +++ +   R+DGR    +R+I+ ++GL +   GS     G+T+ +  V  G  E +    
Sbjct: 118 SIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYEGKA--- 173

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-L 423
           S     R   +  Y+    +  E        R+     RL  +A   V+  T  FP + +
Sbjct: 174 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVI-LTESFPRSQI 232

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ + DGS+  A V  +SLAL DAG+P+    +    G+V    D   + D++  E
Sbjct: 233 DIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIV----DAKPIVDLTSRE 288

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGIS--ENIMVMALQQAKRGRLHI 531
           +        V+G  S I  +    ++  I   + ++++ LQ     RLHI
Sbjct: 289 ETDLLPRVTVSGFSSIILLLHSKFQLATICGRDEVILVELQ----NRLHI 334


>gi|295109047|emb|CBL23000.1| Transcriptional accessory protein [Ruminococcus obeum A2-162]
          Length = 719

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHIS++S + +    + V  GD V V++L  D  +
Sbjct: 647 ILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSEKYIKHPLEAVSVGDVVDVRVLGVDMKK 706

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK + Q
Sbjct: 707 KRISLSMKGIKQ 718


>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
 gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
          Length = 252

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQYVDSLSGTQR 371
           R DGR  + +R+IS Q        GS L   GDT+ I    L  R        ++SG   
Sbjct: 6   RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGW- 64

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T +  +  A   ++ G G    RL  R++  V+       +TL +  
Sbjct: 65  --LTAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDC 122

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+DAG     P    +A +++G + +G+  + L
Sbjct: 123 DVLQADGGTRTASITGAYLAARLAVQKLIDAGTLKENPFRDSIAAVSVG-IYEGEPVLDL 181

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
             I   ED    +DF V  T  G    +Q   +    SE+ +   +  AK+G +  L+ M
Sbjct: 182 PYI---EDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKG-IKELSSM 237

Query: 536 SKVLSESRL 544
                  RL
Sbjct: 238 QAAFLTQRL 246


>gi|261409036|ref|YP_003245277.1| Tex-like protein [Paenibacillus sp. Y412MC10]
 gi|261285499|gb|ACX67470.1| Tex-like protein protein-like protein [Paenibacillus sp. Y412MC10]
          Length = 740

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G+
Sbjct: 667 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 726

Query: 683 IKLSMK 688
           + L+M+
Sbjct: 727 VGLTMR 732


>gi|188535335|ref|YP_001909132.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99]
 gi|188030377|emb|CAO98268.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99]
          Length = 777

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  R
Sbjct: 653 VLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 713 KRIALTMRLDEQ 724


>gi|333030297|ref|ZP_08458358.1| Tex-like protein [Bacteroides coprosuis DSM 18011]
 gi|332740894|gb|EGJ71376.1| Tex-like protein [Bacteroides coprosuis DSM 18011]
          Length = 713

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           IR+I D+ E   I  G V  + +FGAFV      +GL+H+S+++ E V+  +  V     
Sbjct: 628 IRTIEDLKE-GMILPGIVGNITNFGAFVDLGIKENGLIHLSEMANEFVSDPTQYVSIHQQ 686

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++VK+L  D +R +I+LS+K ++QN
Sbjct: 687 IYVKVLSVDLERKRIQLSLKNIEQN 711


>gi|291517976|emb|CBK73197.1| Transcriptional accessory protein [Butyrivibrio fibrisolvens 16/4]
          Length = 719

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG V  V+DFGAF+     +DGLVHISQ++   +    +VV  GD V V+++  D+ +G+
Sbjct: 647 KGTVRNVIDFGAFIDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVDVEVISVDEKKGR 706

Query: 683 IKLSMKV 689
           I L+MK+
Sbjct: 707 IALTMKL 713


>gi|256750897|ref|ZP_05491781.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750232|gb|EEU63252.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 712

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVHIS++S   +    DVV  GD V VK+L  D +R +I
Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVKVKVLSVDIERNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|53794015|gb|AAU93598.1| chloroplast polyprotein of elongation factor Ts precursor
           [Chlamydomonas reinhardtii]
          Length = 1013

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + DV E ++ Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V V
Sbjct: 58  LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D ++ ++ L +K
Sbjct: 117 KVLSVDAEKKRVSLELK 133


>gi|330952080|gb|EGH52340.1| RNA binding S1 [Pseudomonas syringae Cit 7]
          Length = 772

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|300933903|ref|ZP_07149159.1| putative transcriptional accessory protein [Corynebacterium
           resistens DSM 45100]
          Length = 762

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +V  + +G V  V  FGAFV     +DGLVH+S +S   V    DVV  G
Sbjct: 639 EGVEKISDL-KVGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHNFVKDPHDVVHSG 697

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
             V VK+++ D+ R ++ LS+++ D+  G+
Sbjct: 698 QVVKVKVMEVDEARQRVGLSLRLDDEPGGR 727


>gi|281353342|gb|EFB28926.1| hypothetical protein PANDA_013257 [Ailuropoda melanoleuca]
          Length = 200

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 1   GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 55


>gi|239906693|ref|YP_002953434.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
 gi|239796559|dbj|BAH75548.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
          Length = 713

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  V  FGAFV     RDGLVH+S L+   V   + VV  G  V V +L  D +RG++
Sbjct: 641 GRVTNVTAFGAFVDVGVHRDGLVHVSHLADAYVVDPAKVVAAGQEVMVTVLAIDKERGRL 700

Query: 684 KLSMKVVDQNT 694
            LSMK   Q T
Sbjct: 701 SLSMKSEPQAT 711


>gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
 gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
          Length = 493

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 207 QVRTGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 265

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 266 RERVSLSLKATQED 279



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV   + ++VK++D D
Sbjct: 290 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDMAEQVVSVNEELFVKVIDID 349

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 350 LDRRRISLSLK 360


>gi|289627976|ref|ZP_06460930.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866569|gb|EGH01278.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 773

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|228474894|ref|ZP_04059623.1| protein YhgF [Staphylococcus hominis SK119]
 gi|228271126|gb|EEK12506.1| protein YhgF [Staphylococcus hominis SK119]
          Length = 715

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I SI D+ +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD 
Sbjct: 633 ILSIEDLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKYVKNPMDIISVGDI 691

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693
           V V +L+  D+ K K+S+ +++ N
Sbjct: 692 VDVWILNI-DKNKEKVSLTMINPN 714


>gi|153819867|ref|ZP_01972534.1| 30S ribosomal protein S1 [Vibrio cholerae NCTC 8457]
 gi|126509597|gb|EAZ72191.1| 30S ribosomal protein S1 [Vibrio cholerae NCTC 8457]
          Length = 406

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 34  ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 88

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 89  DEILVKVLKFDRDRTRVSLGLK 110



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 125 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 183

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 184 DIDEERRRISLGLKQCKAN 202


>gi|95929492|ref|ZP_01312235.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95134608|gb|EAT16264.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 582

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E  RE  RS T    E  +I +G V  + D+GAF+   G  DGL+HI+ +S  RV+  S
Sbjct: 196 LETERESQRSDTLKTLEEGQIVEGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRVSHPS 254

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           D++  GD++ VK+L FD ++ ++ L +K
Sbjct: 255 DILAVGDSINVKVLKFDREKERVSLGLK 282



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I +GQV  + DFG FV      DGLVHIS LS T+R+   S++ K+GD V   +L+ D D
Sbjct: 388 IIEGQVKNITDFGIFVGVDEGIDGLVHISDLSWTKRIKHPSELYKKGDLVKAVVLNIDRD 447

Query: 680 RGKIKLSMKVVDQN 693
             +  L +K + Q+
Sbjct: 448 NERFSLGVKQLTQD 461



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V  V +FG F+      +GL+H+S++S ++V    D  K GD +   +L  D + 
Sbjct: 475 IIRGKVTSVTEFGIFLEVEEGVEGLIHVSEISKDKVDSPKDFAKVGDELEAVVLHVDTNE 534

Query: 681 GKIKLSMK 688
            KI LS+K
Sbjct: 535 HKIALSIK 542



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAF+      +GL+H+S++S T+R+   + ++  GD V   +L  D +  +
Sbjct: 304 GKVVSLTDYGAFIELEEGVEGLIHVSEMSWTKRIKHPNKLLSIGDEVETVVLAMDTENRR 363

Query: 683 IKLSMKVVDQN 693
           I L +K V+ N
Sbjct: 364 ISLGLKQVEPN 374


>gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54]
 gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54]
          Length = 236

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 25/200 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +E++R IS + G+      S L   G+T  I  V++    +E     + G+ +
Sbjct: 3   MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSV----EESVPPFMRGSGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LPCAT    R     R  R +   RL  R++  ++        TLR+  ++
Sbjct: 59  GWITAEYGMLPCATDSRYRRETNGRSGRTMEIQRLIGRSLRMMVDLETIGERTLRVDCDV 118

Query: 430 TESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD---DFII 475
             +DG +  A++ G +LAL DA            +P   PV  I++G+ KDG    D   
Sbjct: 119 LNADGGTRTASITGGALALRDAFTKLHTTGLLEKMPEIMPVVAISVGM-KDGQALLDLDY 177

Query: 476 LSDISGDEDHLGHMDFKVAG 495
           + D S D D     +F +AG
Sbjct: 178 VEDSSADAD----ANFVMAG 193


>gi|309972958|gb|ADO96159.1| 30S ribosomal protein S1 [Haemophilus influenzae R2846]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|322389951|ref|ZP_08063491.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           903]
 gi|321143387|gb|EFX38825.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           903]
          Length = 718

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%)

Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD- 668
           DV ++  ++ GQ     V  V+DFGAFV      DGL+HIS +S + +   S VV  GD 
Sbjct: 633 DVLDIKDLHIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDL 692

Query: 669 -TVWVKLLDFDDRGKIKLSM 687
            TVWVK +D  +R K+ LS+
Sbjct: 693 VTVWVKRIDV-EREKVNLSL 711


>gi|330972161|gb|EGH72227.1| RNA binding S1 [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 772

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|329928970|ref|ZP_08282780.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328937222|gb|EGG33649.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 731

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G+
Sbjct: 660 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 719

Query: 683 IKLSMK 688
           + L+M+
Sbjct: 720 VGLTMR 725


>gi|315649164|ref|ZP_07902254.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
 gi|315275383|gb|EFU38741.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
          Length = 737

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G+
Sbjct: 667 QGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGR 726

Query: 683 IKLSMK 688
           + L+M+
Sbjct: 727 VGLTMR 732


>gi|300214892|gb|ADJ79308.1| Transcription accessory protein [Lactobacillus salivarius CECT
           5713]
          Length = 345

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVH+S+LS + V+   D+V  G   TVWV+ +D  +R 
Sbjct: 276 EGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDIVAVGQIVTVWVEDVDL-NRK 334

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 335 RIQLTM 340


>gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
 gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
          Length = 238

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R I      ++   GS L   G+T+ I   ++     E     L GT  
Sbjct: 1   MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASI----TEGVPPFLKGTGT 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R     RL  RA+  V+  +     T+ I  
Sbjct: 57  GWITAEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL  A             PI   VA +++G++   DD I+ 
Sbjct: 117 DVIQADGGTRTASISGGFVALYSAFEKLVKSGELEKNPIKNFVAAVSVGVLN--DDVIL- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  V  TDSG
Sbjct: 174 -DLNYEEDSTARVDMNVVATDSG 195


>gi|289674467|ref|ZP_06495357.1| RNA binding S1 [Pseudomonas syringae pv. syringae FF5]
          Length = 772

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|145634451|ref|ZP_01790161.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
 gi|145641111|ref|ZP_01796692.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
 gi|145268431|gb|EDK08425.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
 gi|145274272|gb|EDK14137.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.4-21]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|145630844|ref|ZP_01786621.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
 gi|144983504|gb|EDJ90972.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
          Length = 412

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGIVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+    I
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAI 270



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|330806957|ref|YP_004351419.1| S1 RNA-binding domain protiein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375065|gb|AEA66415.1| Conserved hypothetical protein; putative S1 RNA-binding domain
           protiein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 774

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|194289459|ref|YP_002005366.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193223294|emb|CAQ69299.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 781

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS + V    +VVK G  V VK+++ D  R
Sbjct: 665 VLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVKVKVMEVDVKR 724

Query: 681 GKIKLSMKVVDQ 692
            +I LSM++ D+
Sbjct: 725 NRIGLSMRLDDE 736


>gi|172056093|ref|YP_001812553.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171988614|gb|ACB59536.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 176

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   +DV+  G  + VK+L  
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPTGKTGLVHISEVADSYVKDINDVLTVGQEITVKVLSV 63

Query: 678 DDRGKIKLSM-KVVDQNTGK 696
           ++ GKI LS+ K VD+  G+
Sbjct: 64  ENDGKIGLSIKKAVDRPEGE 83


>gi|282889926|ref|ZP_06298461.1| hypothetical protein pah_c008o002 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500119|gb|EFB42403.1| hypothetical protein pah_c008o002 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 751

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 601 AEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           A  E+A  RE + ++ D+ E  ++ +G V  V  FGAFV     +DGL+HIS+LS + + 
Sbjct: 625 ASFESAKFREDVLTLQDLKEKMQL-EGIVTNVTAFGAFVDIGVHQDGLIHISELSDQFIK 683

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             S+VVK GD + V +L  D +R +I LS +
Sbjct: 684 DPSEVVKTGDKIKVTVLSVDIERKRISLSAR 714


>gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42]
 gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42]
          Length = 245

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 115/251 (45%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ +GV    P++  +A I++G+ K+     +L
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLVKSGVIKTSPVTDYLAAISVGMDKEEG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T SG    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQ 233

Query: 536 SKVLSESRLQL 546
            +VL E+  +L
Sbjct: 234 KEVLGETLPEL 244


>gi|282889765|ref|ZP_06298304.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's
           coccus]
 gi|281500339|gb|EFB42619.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's
           coccus]
          Length = 572

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI     V  + KG V K+  FGAFV      +GL+H+++LS +   K  DVV +GD V 
Sbjct: 450 SIEKTMPVGTLVKGVVSKITAFGAFVELESGIEGLIHVTELSDKAFGKVEDVVAKGDEVI 509

Query: 672 VKLLDFD-DRGKIKLSMK--VVDQN 693
            K++  D +  KI LS+K  ++DQN
Sbjct: 510 AKVIKLDPEYKKIALSIKEYLIDQN 534



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG++V ++ +GAF+      +GL+H+S++S  + V   SDVVK+GD V   +L    D G
Sbjct: 288 KGKIVNLLPYGAFIEIEPGIEGLIHVSEMSWVKNVTDPSDVVKKGDEVEAIVLSVQKDEG 347

Query: 682 KIKLSMKVVDQN 693
           KI L +K  + N
Sbjct: 348 KISLGIKQTEHN 359



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 4/111 (3%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+NI+    V ++   L E E   +    +  + E   I +G V  + DFG F+   G  
Sbjct: 165 KINIERKNVV-VSRRELLEAERVSKKAEVLERIQE-GDIREGTVKNITDFGVFLDLDGI- 221

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           DGL+HI+ ++ +R+   S++V+ GD + VK+L  D ++G++ L +K  + N
Sbjct: 222 DGLLHITDMTWKRIKHPSEMVQLGDKLKVKILSIDKEKGRVALGLKQKEPN 272



 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           K ++  + ++GAFV      +GL+HIS LS  ++V+  S+V+++GD V   +L  D D  
Sbjct: 375 KAEIKSLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEVLRKGDVVDAVILSVDKDSK 434

Query: 682 KIKLSMKVVDQNTGKPI 698
           KI L +K +  N  + I
Sbjct: 435 KITLGVKQLSDNPWESI 451


>gi|253699853|ref|YP_003021042.1| RNA binding S1 domain protein [Geobacter sp. M21]
 gi|251774703|gb|ACT17284.1| RNA binding S1 domain protein [Geobacter sp. M21]
          Length = 756

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +I D+ E   I +G V  V  FGAFV     +DGLVH+SQL+       +D VK 
Sbjct: 637 REDVVTIADLKE-GMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V VK+L  D +R +I LS+K
Sbjct: 696 GQIVKVKVLSADPERKRISLSIK 718


>gi|330445635|ref|ZP_08309287.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489826|dbj|GAA03784.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 556

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEILVKVLKFDRDRTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|66043527|ref|YP_233368.1| RNA binding S1 [Pseudomonas syringae pv. syringae B728a]
 gi|63254234|gb|AAY35330.1| RNA binding S1 [Pseudomonas syringae pv. syringae B728a]
          Length = 772

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|329123269|ref|ZP_08251837.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
 gi|327471478|gb|EGF16926.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|319760512|ref|YP_004124450.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
 gi|318039226|gb|ADV33776.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
          Length = 575

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+++G V+K     + D+GAF+   G  DGL+HI+ +S +RV   SDV+  GD++ VK
Sbjct: 186 LNKLHEGVVLKGLVKNLTDYGAFIDLGGI-DGLLHITDISWKRVKHPSDVINIGDSITVK 244

Query: 674 LLDFD-DRGKIKLSMK 688
           +L FD +R ++ L +K
Sbjct: 245 VLKFDKERIRVSLGLK 260



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 11/114 (9%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK--------GQVVKVMDFGAF 636
           +NI D  TVK+       I  +  + + + D P  + I+         G+V  + D+G F
Sbjct: 235 INIGDSITVKVLKFDKERIRVSLGL-KQLQDDPWASVIHNYKEGDKLVGKVTNLTDYGCF 293

Query: 637 VHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +   G  +GLVHIS++  T +  + S VV  GD + V +LD D DR +I L +K
Sbjct: 294 IEIKGGVEGLVHISEMDWTNKNIQPSKVVAIGDLIEVIVLDIDKDRRRISLGLK 347



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  V DFG F+   G  DGLVH+S +S + V + S +  K+GD +   +L  D +R +
Sbjct: 369 GKIKSVTDFGIFIGLEGGIDGLVHLSDISWDMVNEESINKYKKGDEIEAVVLQVDIERER 428

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 429 ISLSIK 434


>gi|313149392|ref|ZP_07811585.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313138159|gb|EFR55519.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 69

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           M +GAFV F   +DGL+HIS++  +R+    +  +KEGD + VKL+D D + GK KLS K
Sbjct: 1   MPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRK 60

Query: 689 VV 690
           V+
Sbjct: 61  VL 62


>gi|302188957|ref|ZP_07265630.1| RNA binding S1 [Pseudomonas syringae pv. syringae 642]
          Length = 772

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRKRVGLSMRMSD 721


>gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
 gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
          Length = 497

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           microorganism HF4000_APKG2H5]
          Length = 238

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 14/198 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           RMDGR    +R IS +VG++    GS+  +R  T  ++    G    E +   +S   R 
Sbjct: 16  RMDGRKPADLRPISIEVGVVPVAAGSAC-VRWGTNHVIAAVYGPM--EAHPRKISRQDRA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
              + YN  P +T +  R G   R REI   ++   A+  V+     +P + +R+  EI 
Sbjct: 73  VLDVRYNMAPFSTTDRIRPGFNRRSREI--SKVTSDALESVV-LLEMYPRSKIRVEIEIL 129

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            ++  +    +  +S+AL  AG+P++  V  +A G +    + +++ D++ +ED+ G  D
Sbjct: 130 CAEAGTRCVGLTAASVALAHAGIPMTDMVVSVASGKI----NGVVICDLNKEEDNYGEAD 185

Query: 491 FKVAG-TDSG-ITAMQMD 506
             +    +SG +  +QMD
Sbjct: 186 LPMGMLPNSGDLVFLQMD 203


>gi|159477691|ref|XP_001696942.1| polyprotein of PSRP-7 and EF-Ts, splice variant 2 [Chlamydomonas
           reinhardtii]
 gi|158274854|gb|EDP00634.1| polyprotein of PSRP-7 and EF-Ts, splice variant 2 [Chlamydomonas
           reinhardtii]
          Length = 603

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + DV E ++ Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V V
Sbjct: 58  LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D ++ ++ L +K
Sbjct: 117 KVLSVDAEKKRVSLELK 133


>gi|145633320|ref|ZP_01789051.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
 gi|144986166|gb|EDJ92756.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKTN 352


>gi|117924758|ref|YP_865375.1| RNA-binding S1 domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608514|gb|ABK43969.1| RNA binding S1 domain protein [Magnetococcus sp. MC-1]
          Length = 773

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ +   + +G V  V +FGAFV     +DGLVHIS +S + V     V + 
Sbjct: 640 QEGVEDIKDL-QPGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAMSNQFVKDPHQVTRA 698

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+++ D +R +I LSM++ DQ
Sbjct: 699 GAVVQVKVMEIDLNRRRIALSMRLEDQ 725


>gi|312868311|ref|ZP_07728511.1| Tex-like protein N-terminal domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096056|gb|EFQ54300.1| Tex-like protein N-terminal domain protein [Streptococcus
           parasanguinis F0405]
          Length = 718

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%)

Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD- 668
           DV ++  ++ GQ     V  V+DFGAFV      DGL+HIS +S + +   S VV  GD 
Sbjct: 633 DVLDIKDLHIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDL 692

Query: 669 -TVWVKLLDFDDRGKIKLSM 687
            TVWVK +D  +R K+ LS+
Sbjct: 693 VTVWVKKIDV-EREKVNLSL 711


>gi|229845053|ref|ZP_04465189.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
 gi|229846877|ref|ZP_04466984.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
 gi|229810366|gb|EEP46085.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
 gi|229812025|gb|EEP47718.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|148827070|ref|YP_001291823.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
 gi|148718312|gb|ABQ99439.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|145629272|ref|ZP_01785071.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
 gi|145636918|ref|ZP_01792583.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
 gi|260581139|ref|ZP_05848959.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
 gi|260582648|ref|ZP_05850437.1| ribosomal protein S1 [Haemophilus influenzae NT127]
 gi|319776105|ref|YP_004138593.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
 gi|319896914|ref|YP_004135109.1| 30S ribosomal protein s1 [Haemophilus influenzae F3031]
 gi|144978775|gb|EDJ88498.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
 gi|145269999|gb|EDK09937.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
 gi|260092167|gb|EEW76110.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
 gi|260094320|gb|EEW78219.1| ribosomal protein S1 [Haemophilus influenzae NT127]
 gi|301169961|emb|CBW29565.1| 30S ribosomal subunit protein S1 [Haemophilus influenzae 10810]
 gi|317432418|emb|CBY80773.1| 30S ribosomal protein S1 [Haemophilus influenzae F3031]
 gi|317450696|emb|CBY86916.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|1881289|dbj|BAA19316.1| ydcJ [Bacillus subtilis]
          Length = 123

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDR 680
            +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD  TVWV  +D   +
Sbjct: 56  LQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDV-QK 114

Query: 681 GKIKLSM 687
           G++ LSM
Sbjct: 115 GRVSLSM 121


>gi|16273139|ref|NP_439376.1| 30S ribosomal protein S1 [Haemophilus influenzae Rd KW20]
 gi|2500383|sp|Q48082|RS1_HAEIN RecName: Full=30S ribosomal protein S1
 gi|1574150|gb|AAC22873.1| ribosomal protein S1 (rpS1) [Haemophilus influenzae Rd KW20]
          Length = 549

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGVVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|331266273|ref|YP_004325903.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
 gi|326682945|emb|CBZ00562.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
          Length = 732

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  
Sbjct: 645 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 703

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQNT 694
           GD  TVWVK +D  +R K+ LS+   D++ 
Sbjct: 704 GDLVTVWVKKID-TEREKVNLSLLAPDESN 732


>gi|315644380|ref|ZP_07897520.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
 gi|315280257|gb|EFU43549.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
          Length = 163

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63

Query: 678 DDRGKIKLSMK 688
           D  GKI LS+K
Sbjct: 64  DKDGKIGLSIK 74


>gi|302385050|ref|YP_003820872.1| Tex-like protein protein-like protein [Clostridium saccharolyticum
           WM1]
 gi|302195678|gb|ADL03249.1| Tex-like protein protein-like protein [Clostridium saccharolyticum
           WM1]
          Length = 713

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV E+  +  G V+K     V+DFGAFV     +DGLVHISQ+S + +    + V  GD
Sbjct: 632 TDVMEMKDLQPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEAVSVGD 691

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
            V VK++  D  + +I L+MK+
Sbjct: 692 IVEVKVISVDVQKKRIALTMKL 713


>gi|261403925|ref|YP_003240166.1| RNA-binding S1 domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329925485|ref|ZP_08280359.1| S1 RNA binding domain protein [Paenibacillus sp. HGF5]
 gi|261280388|gb|ACX62359.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
 gi|328939768|gb|EGG36108.1| S1 RNA binding domain protein [Paenibacillus sp. HGF5]
          Length = 162

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63

Query: 678 DDRGKIKLSMK 688
           D  GKI LS+K
Sbjct: 64  DKDGKIGLSIK 74


>gi|187935343|ref|YP_001884415.1| hypothetical protein CLL_A0161 [Clostridium botulinum B str. Eklund
           17B]
 gi|188588644|ref|YP_001919608.1| hypothetical protein CLH_0154 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251779823|ref|ZP_04822743.1| putative RNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|187723496|gb|ACD24717.1| putative RNA-binding protein [Clostridium botulinum B str. Eklund
           17B]
 gi|188498925|gb|ACD52061.1| putative RNA-binding protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243084138|gb|EES50028.1| putative RNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 138

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G VV + +FGAF+   G + GLVHIS+++   V    + +KE D V VK++  
Sbjct: 4   EAGNILEGIVVNITNFGAFIEVEG-KTGLVHISEVADSYVKDIREHLKEQDKVKVKVISI 62

Query: 678 DDRGKIKLSMK 688
           DD GKI LS+K
Sbjct: 63  DDNGKISLSIK 73


>gi|53804824|ref|YP_113508.1| S1 RNA-binding domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53758585|gb|AAU92876.1| S1 RNA binding domain protein [Methylococcus capsulatus str. Bath]
          Length = 735

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVHIS L+   V    +VVK GD V VK+L+ D  R +
Sbjct: 622 EGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKVLEVDIPRRR 681

Query: 683 IKLSMK 688
           I LSM+
Sbjct: 682 IALSMR 687


>gi|15923498|ref|NP_371032.1| hypothetical protein SAV0508 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926185|ref|NP_373718.1| hypothetical protein SA0466 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282192|ref|NP_645280.1| hypothetical protein MW0463 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485372|ref|YP_042593.1| hypothetical protein SAS0465 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651384|ref|YP_185440.1| hypothetical protein SACOL0552 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160186|ref|YP_493195.1| hypothetical protein SAUSA300_0486 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194268|ref|YP_499060.1| hypothetical protein SAOUHSC_00483 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266967|ref|YP_001245910.1| hypothetical protein SaurJH9_0530 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393013|ref|YP_001315688.1| hypothetical protein SaurJH1_0543 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220682|ref|YP_001331504.1| hypothetical protein NWMN_0470 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978836|ref|YP_001441095.1| hypothetical protein SAHV_0505 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161508748|ref|YP_001574407.1| hypothetical protein USA300HOU_0502 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142300|ref|ZP_03566793.1| hypothetical protein SauraJ_11807 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315223|ref|ZP_04838436.1| hypothetical protein SauraC_03490 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253730976|ref|ZP_04865141.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735243|ref|ZP_04869408.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005301|ref|ZP_05143902.2| hypothetical protein SauraM_02500 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424620|ref|ZP_05601048.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427286|ref|ZP_05603687.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429923|ref|ZP_05606309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432625|ref|ZP_05608987.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435529|ref|ZP_05611579.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257794251|ref|ZP_05643230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|258407232|ref|ZP_05680377.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9763]
 gi|258420801|ref|ZP_05683737.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258424456|ref|ZP_05687335.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258429625|ref|ZP_05688299.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258446105|ref|ZP_05694266.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A6300]
 gi|258448013|ref|ZP_05696143.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|258452811|ref|ZP_05700806.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|258453841|ref|ZP_05701814.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5937]
 gi|262049993|ref|ZP_06022852.1| hypothetical protein SAD30_0221 [Staphylococcus aureus D30]
 gi|262052535|ref|ZP_06024732.1| hypothetical protein SA930_1956 [Staphylococcus aureus 930918-3]
 gi|269202128|ref|YP_003281397.1| hypothetical protein SAAV_0455 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895116|ref|ZP_06303336.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|282903094|ref|ZP_06310986.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282904883|ref|ZP_06312743.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282907830|ref|ZP_06315668.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910146|ref|ZP_06317952.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913336|ref|ZP_06321127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282915826|ref|ZP_06323594.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918289|ref|ZP_06326029.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282923040|ref|ZP_06330726.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282925583|ref|ZP_06333236.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|283768943|ref|ZP_06341852.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957298|ref|ZP_06374756.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284023517|ref|ZP_06377915.1| hypothetical protein Saura13_02949 [Staphylococcus aureus subsp.
           aureus 132]
 gi|293500385|ref|ZP_06666237.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509324|ref|ZP_06668040.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515912|ref|ZP_06670602.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294850368|ref|ZP_06791101.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|295407398|ref|ZP_06817195.1| hypothetical protein SMAG_02570 [Staphylococcus aureus A8819]
 gi|296276161|ref|ZP_06858668.1| hypothetical protein SauraMR_07419 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207389|ref|ZP_06923828.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246478|ref|ZP_06930318.1| hypothetical protein SLAG_02553 [Staphylococcus aureus A8796]
 gi|297591581|ref|ZP_06950218.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|300910348|ref|ZP_07127801.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380526|ref|ZP_07363202.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13700398|dbj|BAB41696.1| SA0466 [Staphylococcus aureus subsp. aureus N315]
 gi|14246276|dbj|BAB56670.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21203628|dbj|BAB94328.1| MW0463 [Staphylococcus aureus subsp. aureus MW2]
 gi|49243815|emb|CAG42240.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285570|gb|AAW37664.1| general stress protein 13 [Staphylococcus aureus subsp. aureus COL]
 gi|87126160|gb|ABD20674.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87201826|gb|ABD29636.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740036|gb|ABQ48334.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945465|gb|ABR51401.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373482|dbj|BAF66742.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156720971|dbj|BAF77388.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367557|gb|ABX28528.1| hypothetical protein USA300HOU_0502 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725288|gb|EES94017.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726803|gb|EES95532.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257272647|gb|EEV04767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275937|gb|EEV07405.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279439|gb|EEV10034.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282490|gb|EEV12623.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285166|gb|EEV15283.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257788223|gb|EEV26563.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|257841190|gb|EEV65639.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9763]
 gi|257843193|gb|EEV67606.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257845325|gb|EEV69360.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257849684|gb|EEV73651.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257855082|gb|EEV78024.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A6300]
 gi|257858703|gb|EEV81576.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|257859497|gb|EEV82350.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|257864012|gb|EEV86767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5937]
 gi|259159582|gb|EEW44629.1| hypothetical protein SA930_1956 [Staphylococcus aureus 930918-3]
 gi|259161928|gb|EEW46511.1| hypothetical protein SAD30_0221 [Staphylococcus aureus D30]
 gi|262074418|gb|ACY10391.1| hypothetical protein SAAV_0455 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940079|emb|CBI48455.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314559|gb|EFB44946.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317855|gb|EFB48224.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282320317|gb|EFB50659.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322807|gb|EFB53127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325994|gb|EFB56300.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282328306|gb|EFB58581.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282332000|gb|EFB61509.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282592487|gb|EFB97499.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|282596520|gb|EFC01480.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282762534|gb|EFC02674.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|283461124|gb|EFC08210.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283469800|emb|CAQ49011.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283791222|gb|EFC30032.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816207|gb|ADC36694.1| RNA binding protein, contains ribosomal protein S1 domain
           [Staphylococcus aureus 04-02981]
 gi|290921320|gb|EFD98378.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096345|gb|EFE26605.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467869|gb|EFF10379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|294822792|gb|EFG39228.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|294967755|gb|EFG43787.1| hypothetical protein SMAG_02570 [Staphylococcus aureus A8819]
 gi|296887952|gb|EFH26846.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176665|gb|EFH35927.1| hypothetical protein SLAG_02553 [Staphylococcus aureus A8796]
 gi|297575450|gb|EFH94167.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|298693838|gb|ADI97060.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300888337|gb|EFK83524.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302332221|gb|ADL22414.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302750399|gb|ADL64576.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340930|gb|EFM06854.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436402|gb|ADQ75473.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829003|emb|CBX33845.1| general stress protein 13 (GSP13) [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128636|gb|EFT84639.1| hypothetical protein CGSSa03_01645 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193870|gb|EFU24264.1| hypothetical protein CGSSa00_12592 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315196191|gb|EFU26547.1| hypothetical protein CGSSa01_12543 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320144182|gb|EFW35950.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323438740|gb|EGA96480.1| hypothetical protein SAO11_2433 [Staphylococcus aureus O11]
 gi|323442048|gb|EGA99683.1| hypothetical protein SAO46_2007 [Staphylococcus aureus O46]
 gi|329313227|gb|AEB87640.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725063|gb|EGG61558.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729775|gb|EGG66172.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21189]
 gi|329731089|gb|EGG67461.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 133

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    + +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|330943283|gb|EGH45672.1| RNA binding S1 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 239

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 118 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 177

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 178 KRVGLSMRMSD 188


>gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
 gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
          Length = 499

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 5/99 (5%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S  A +E  +  +R+ T + E+ K  +  G V  +++FGAFV   G  DGLVH+S+LS +
Sbjct: 184 SRRAWLEQTQSEVRT-TFLKELQKGQVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWK 241

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 242 HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 280



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G  ++VK++D D
Sbjct: 291 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQVVTVGSDIFVKVIDID 350

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 351 LERRRISLSLKQANED 366


>gi|332141546|ref|YP_004427284.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551568|gb|AEA98286.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 504

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   V +  AK N      V ++  ++ E E++ E    + ++ E ++I
Sbjct: 127 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERETLLANLEEGHEI 181

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD ++ 
Sbjct: 182 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQ 239

Query: 682 KIKLSMK 688
           ++ L MK
Sbjct: 240 RVSLGMK 246



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  GQV  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 261 PEGTKI-NGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVL 319

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 320 EIDEERRRISLGLK 333



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S  +  +  D V   K+GD +   +L  D +R
Sbjct: 355 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKSGE--DAVRDYKKGDEISAVVLQVDPER 412

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 413 ERISLGVKQIEED 425


>gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 501

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 31/167 (18%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRV-----EIMAIPPDQIRNVIGMGGKVIRGIVEQTGA- 583
            ++ E+ + L+E + ++GE          E++A    +++  +G+GG       E+ GA 
Sbjct: 31  EVVAEVKEELAEVKEEIGEALAEAREKASEVLA----EVKERVGLGGD--DEATEEAGAT 84

Query: 584 -KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            + + D+DGT       LA++ A  E+               G+V     +G FV     
Sbjct: 85  FEPSGDEDGTT---PRRLADLHAGMEL--------------DGKVTSTALYGVFVDIGVG 127

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           RDGLVHIS++S +R+   +DVV+ GD V V++   D D  +I L+M+
Sbjct: 128 RDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRISLTMR 174



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  +  FGAFV     RDGLVHIS+LS  RV K  DVVK GD V V++L+ D D 
Sbjct: 298 VLDGKVSGIAPFGAFVDLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDS 357

Query: 681 GKIKLSMKVVDQNT 694
            +I L+M+V +  T
Sbjct: 358 KRISLTMRVEEAPT 371



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 617 PEVNK----------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           PEVN           +  G V  +  FG FV     +DGLVHIS+LS  RV K  D V  
Sbjct: 188 PEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTV 247

Query: 667 GDTVWVKLLDFDDRG-KIKLSMK 688
           G +   ++L+ D    +I LS++
Sbjct: 248 GQSYTFRVLEVDTGAQRISLSLR 270


>gi|21633221|gb|AAM22483.1| ribosomal protein S1-like protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 124

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  + +FGAFV       GLVH+S+++ + V K SDV+K G  V VK+L+ D  +
Sbjct: 7   VIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSK 66

Query: 681 GKIKLSMKVVD 691
            +I LS+K VD
Sbjct: 67  RRISLSIKQVD 77


>gi|330965662|gb|EGH65922.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 773

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|300313473|ref|YP_003777565.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
 gi|300076258|gb|ADJ65657.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
          Length = 783

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+   + I +G V  V  FGAFV     +DGLVHIS LS   V     VVK 
Sbjct: 651 KEGVEEIKDL-RPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTYVKDPHTVVKA 709

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           G  V VK+L+ D+ R +I L+M++ D
Sbjct: 710 GQVVKVKVLEVDEKRKRIALTMRLND 735


>gi|184154694|ref|YP_001843034.1| RNA binding protein [Lactobacillus fermentum IFO 3956]
 gi|227514334|ref|ZP_03944383.1| RNA-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|260663743|ref|ZP_05864631.1| RNA binding protein [Lactobacillus fermentum 28-3-CHN]
 gi|183226038|dbj|BAG26554.1| RNA binding protein [Lactobacillus fermentum IFO 3956]
 gi|227087306|gb|EEI22618.1| RNA-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|260551794|gb|EEX24910.1| RNA binding protein [Lactobacillus fermentum 28-3-CHN]
          Length = 168

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V  + +FGAF+     + GLVHISQ+S + +    DV+  GD V VK++  +  GKI 
Sbjct: 11  GTVSGITNFGAFIDLADNKTGLVHISQVSDKFIKDIHDVLTVGDKVMVKVMKIEGNGKIA 70

Query: 685 LSMK 688
           LSMK
Sbjct: 71  LSMK 74


>gi|144897525|emb|CAM74389.1| Transcriptional accessory protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 779

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVH+S L+   V    +VVK GD V VK+L+ D  R
Sbjct: 659 ILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKPGDVVSVKVLEVDLKR 718

Query: 681 GKIKLSMKVVD 691
            +I L+M+  D
Sbjct: 719 KRIALTMRKND 729


>gi|332993175|gb|AEF03230.1| 30S ribosomal protein S1 [Alteromonas sp. SN2]
          Length = 556

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   V +  AK N      V ++  ++ E E++ E    + ++ E ++I
Sbjct: 141 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERESLLANLEEGHEI 195

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD ++ 
Sbjct: 196 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQ 253

Query: 682 KIKLSMK 688
           ++ L MK
Sbjct: 254 RVSLGMK 260



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  GQV  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 275 PEGTKI-SGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S  +  +  D V   K+GD +   +L  D +R
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKSGE--DAVRDYKKGDEISAVVLQVDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 427 ERISLGVKQIEED 439


>gi|329117363|ref|ZP_08246080.1| Tex-like protein N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907768|gb|EGE54682.1| Tex-like protein N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 710

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D  DR 
Sbjct: 639 EGTVRNVVDFGAFVDVGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVSKIDL-DRH 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|94501660|ref|ZP_01308176.1| S1 RNA binding domain protein [Oceanobacter sp. RED65]
 gi|94426236|gb|EAT11228.1| S1 RNA binding domain protein [Oceanobacter sp. RED65]
          Length = 776

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE +   E I+ + D    + I +G V  V  FGAFV     +DGLVHIS +S + +   
Sbjct: 635 AEFKEGVEEIKDLKD----DMILEGVVSNVAAFGAFVDVGVHQDGLVHISMMSDQFIDDP 690

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             VVK GD V VK+++ D  R +I LSM++ D
Sbjct: 691 RQVVKAGDVVKVKVMEVDVPRKRIALSMRMSD 722


>gi|330957181|gb|EGH57441.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 134

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R + D+ ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V
Sbjct: 2   RDLKDL-QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVV 60

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            VK+++ D  R ++ LSM++ D
Sbjct: 61  KVKVMEVDIPRKRVGLSMRMSD 82


>gi|196250872|ref|ZP_03149557.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|196209601|gb|EDY04375.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 121

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I KG+V  +  +GAFV   G   GL+HIS++S   V    D V  GD V VK+LD D + 
Sbjct: 9   IVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVKVLDVDYKA 68

Query: 681 GKIKLSMKVVD 691
           G+  LS+K ++
Sbjct: 69  GRASLSLKALE 79


>gi|168180380|ref|ZP_02615044.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum NCTC 2916]
 gi|226949048|ref|YP_002804139.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668877|gb|EDT80855.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum NCTC 2916]
 gi|226843882|gb|ACO86548.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A2 str. Kyoto]
          Length = 638

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + +G+V +  DFGAF+   G  DGL+H+S++S  RV K  D +K GD + V +LD 
Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K+ LS+K + ++  K +
Sbjct: 536 DKENKKLALSIKKLIEDPWKSV 557



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612]
 gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612]
          Length = 240

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +E +R +S      +   G+ L   G+T+ I    +    +++    L G ++ 
Sbjct: 3   RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMV----EDKVPPFLRGEKKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TG  SR G    R    G      RL  R++  V+        T+ I 
Sbjct: 59  WVTAEYEMLPSSTG--SRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL DA             PI+  VA  ++G+ ++      
Sbjct: 117 CDVIQADGGTRTASITGAFVALYDAVTWLMEEEIIDEWPINGYVAATSVGINQNEP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+  +ED    +D  +  TD G
Sbjct: 173 IMDLCYEEDSTAEVDMNIVMTDEG 196


>gi|291458642|ref|ZP_06598032.1| S1 RNA binding domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419175|gb|EFE92894.1| S1 RNA binding domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 723

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  + DFGAF+     +DGLVHIS+L+   V   S++++ G    V++L  D+ R
Sbjct: 652 ILEGVVRNITDFGAFLDIGVHQDGLVHISELAERYVKHPSELLRLGQVKRVRILSVDEKR 711

Query: 681 GKIKLSMKVV 690
           G+I LSMK +
Sbjct: 712 GRISLSMKKI 721


>gi|316932054|ref|YP_004107036.1| Tex-like protein protein-like protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599768|gb|ADU42303.1| Tex-like protein protein-like protein [Rhodopseudomonas palustris
           DX-1]
          Length = 778

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 20/152 (13%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA------- 606
           +I+A     I+ +IG   KV++G+  Q  A    D+   +   S  L E+E         
Sbjct: 579 KILAATKSDIKALIGQT-KVLQGLKPQAFA----DEKFGIPTVSDILKELEKPGRDPRPE 633

Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                 +E +  ITD+ +   I +  +  V  FGAF      +DGL+HIS +S  R+   
Sbjct: 634 FKTATFQEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDP 692

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            +VVK G  V VK+L+ D  R +I L++++ D
Sbjct: 693 REVVKPGQVVKVKVLEVDVPRNRIGLTLRMSD 724


>gi|187780230|ref|ZP_02996703.1| hypothetical protein CLOSPO_03826 [Clostridium sporogenes ATCC
           15579]
 gi|187773855|gb|EDU37657.1| hypothetical protein CLOSPO_03826 [Clostridium sporogenes ATCC
           15579]
          Length = 387

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 620 NKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           N + KGQ     V ++  FGAFV   G  DGLVH SQLS  RV   S+VV  GD V V +
Sbjct: 193 NSLEKGQKIDGVVRRLEKFGAFVD-IGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYV 251

Query: 675 LDFD-DRGKIKLSMKVVDQ---NTGK 696
           LDFD D  KI LS+K V     NT K
Sbjct: 252 LDFDKDTKKIALSLKDVKNDPWNTAK 277



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V+K+++FGAF+      +GLVHIS+++ E +AK S+ +  GD V VK+L+ +
Sbjct: 282 VGSVVEGTVIKLLNFGAFIEVEKGIEGLVHISEITDENIAKPSENLNIGDRVKVKVLELN 341

Query: 679 -DRGKIKLSMK 688
            D  ++ LS+K
Sbjct: 342 SDEKRMSLSIK 352


>gi|159477689|ref|XP_001696941.1| plastid-specific ribosomal protein 7 [Chlamydomonas reinhardtii]
 gi|158274853|gb|EDP00633.1| plastid-specific ribosomal protein 7 [Chlamydomonas reinhardtii]
          Length = 560

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + DV E ++ Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V V
Sbjct: 58  LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D ++ ++ L +K
Sbjct: 117 KVLSVDAEKKRVSLELK 133


>gi|53794017|gb|AAU93599.1| plastid-specific ribosomal protein-7 precursor [Chlamydomonas
           reinhardtii]
          Length = 560

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + DV E ++ Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V V
Sbjct: 58  LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D ++ ++ L +K
Sbjct: 117 KVLSVDAEKKRVSLELK 133


>gi|330874560|gb|EGH08709.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 773

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R
Sbjct: 651 ILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPR 710

Query: 681 GKIKLSMKVVD 691
            ++ LSM++ D
Sbjct: 711 KRVGLSMRMSD 721


>gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
 gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
 gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
 gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
 gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
 gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
 gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
 gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
 gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
 gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
 gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
 gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
 gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
 gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
 gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
 gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
          Length = 254

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +SV+  I  KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 1   MSVWATILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 55  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++ +ED     D  V  + +G
Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 85  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198

Query: 174 --LDLFVSGTQDAV 185
             +++ +SG  D V
Sbjct: 199 TDMNVVMSGNGDFV 212


>gi|270293991|ref|ZP_06200193.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275458|gb|EFA21318.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 711

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I+D+ E  ++  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 628 VRTISDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLSQLADRFISDPNEVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           + VK+L  D DR +I+L+MK V+QN
Sbjct: 687 IRVKVLSIDMDRKRIQLTMKGVEQN 711


>gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C]
 gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C]
          Length = 504

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 296 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 355

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 356 DLERRRISLSLKQANESFG 374



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 214 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 272

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 273 RERVSLSLKATQED 286


>gi|227503365|ref|ZP_03933414.1| transcription accessory protein [Corynebacterium accolens ATCC
           49725]
 gi|227075868|gb|EEI13831.1| transcription accessory protein [Corynebacterium accolens ATCC
           49725]
          Length = 774

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+     + +G V  V  FGAFV     +DGLVH+S +S + V+   +VV+ 
Sbjct: 628 KEGVHKVSDLTP-GMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHQFVSDPHEVVRS 686

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V VK+++ D DR +I LS++ +D   G+P
Sbjct: 687 GQVVKVKVMEVDVDRQRIGLSLR-LDDEPGQP 717


>gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
 gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
          Length = 408

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G++ ++ DFGAF+   G  DGLVH+S+++   V K SD +  G+ V VK+L  + D 
Sbjct: 208 IVEGKIARLTDFGAFIDLGGI-DGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDE 266

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 267 GRISLSIK 274



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD + VK+L+  
Sbjct: 290 VGSILEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVH 349

Query: 679 -DRGKIKLSMKVVD 691
            +  ++ LS+K ++
Sbjct: 350 PEDHRLALSIKALE 363


>gi|53794019|gb|AAU93600.1| chloroplast polyprotein of elongation factor Ts precursor
           [Chlamydomonas reinhardtii]
          Length = 603

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + DV E ++ Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V V
Sbjct: 58  LEDVKEGSE-YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 116

Query: 673 KLLDFD-DRGKIKLSMK 688
           K+L  D ++ ++ L +K
Sbjct: 117 KVLSVDAEKKRVSLELK 133


>gi|306821676|ref|ZP_07455273.1| S1-type RNA-binding domain protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550258|gb|EFM38252.1| S1-type RNA-binding domain protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 149

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++DV EV  I  G V+ +  +G FV     + GLVHISQ+S E +   + +++ GD + V
Sbjct: 1   MSDVLEVGSIISGTVINIKPYGIFVSIGKNQKGLVHISQVSDEYIRDINQILRSGDKINV 60

Query: 673 KLLDFDDRGKIKLSMK 688
           K+L  ++ GK+ LS+K
Sbjct: 61  KVLS-NEEGKVSLSIK 75


>gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group]
          Length = 382

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ GDT+ V +L  D
Sbjct: 234 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 292

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 293 RERGRVSLSTKKLEPTPG 310


>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 242

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 13/233 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R+   + G+    +GS+    G+T+ + +V       E  + S +   R
Sbjct: 12  LRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVD---GPSEPVIKSKARADR 68

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
               +  N    +T +V +     RR I    LA +     + QT  +P + + +   + 
Sbjct: 69  TFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           + DG+   + +  ++LAL+DAG+P+   V     G+V+     ++L   S +E  L  + 
Sbjct: 128 QDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESD---MLLDLNSLEESALSWLT 184

Query: 491 FKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             V G    +  MQ++  +     E++M MA+     G  HI N M   + +S
Sbjct: 185 VAVLGNIKKVVYMQLETSMHLDYLESVMNMAIA----GSEHIYNTMQSAVRQS 233


>gi|322806046|emb|CBZ03613.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum H04402 065]
          Length = 638

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + +G+V +  DFGAF+   G  DGL+H+S++S  RV K  D +K GD + V +LD 
Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K+ LS+K + ++  K +
Sbjct: 536 DKENKKLALSIKKLIEDPWKSV 557



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2]
          Length = 254

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +SV+  I  KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 1   MSVWPTILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 55  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++ +ED     D  V  + +G
Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 209



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 85  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 139 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 198

Query: 174 --LDLFVSGTQDAV 185
             +++ +SG  D V
Sbjct: 199 TDMNVVMSGNGDFV 212


>gi|312880067|ref|ZP_07739867.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
 gi|310783358|gb|EFQ23756.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
          Length = 502

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
           +VV++ DFGAFV      +GL+HISQLS +RV K  DV++EG  V  ++L+ +    +I+
Sbjct: 387 KVVRLADFGAFVELEEGVEGLIHISQLSRQRVDKPQDVLQEGQEVEARILEVNPAERRIR 446

Query: 685 LSMK 688
           LS++
Sbjct: 447 LSLR 450



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  +  FG FV+  GA +GLVHIS+LS +R AK  D+V +GD V VK++  D + 
Sbjct: 213 VLEGDVSSITSFGVFVNL-GALEGLVHISELSWQRNAKARDLVNKGDHVKVKVIGIDRET 271

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 272 NRISLSIK 279



 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +G V  + DFGAFV      +GLVHI  LS  R+    +V+K+G  +
Sbjct: 300 EGTVTNLTDFGAFVEIEPGVEGLVHIGDLSWSRIKHPREVLKKGQKI 346


>gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
 gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
          Length = 282

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R +      ++   GS L   GDT+ I   ++    D++       +  
Sbjct: 25  LRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASV----DDKVPPFKKNSGE 80

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y+ LP +TG     ++S++    R +EI   RL  RA+  V+   A     + I
Sbjct: 81  GWVTAEYSMLPRSTGVRNQRDISKLKLNGRSQEI--QRLIGRALRSVVNFHALGERAIII 138

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +A++DA            +PI+  VA +++G++ D +   
Sbjct: 139 DCDVIQADGGTRTASITGAFVAMVDACKKLVEDGVIEKIPITDMVAAVSVGIIGDEE--- 195

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED    +D  V  T SG
Sbjct: 196 -MLDLCYGEDSNAVVDMNVVMTSSG 219


>gi|296876119|ref|ZP_06900173.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296432830|gb|EFH18623.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 718

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 8/80 (10%)

Query: 615 DVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD- 668
           DV ++  ++ GQ     V  V+DFGAFV      DGL+HIS +S + +   S VV  GD 
Sbjct: 633 DVLDIKDLHIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDL 692

Query: 669 -TVWVKLLDFDDRGKIKLSM 687
            TVWVK +D  +R K+ LS+
Sbjct: 693 VTVWVKKIDV-EREKVNLSL 711


>gi|288922364|ref|ZP_06416555.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
 gi|288346271|gb|EFC80609.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
          Length = 768

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S +S   V+   DV K GD V VK+LD D  R
Sbjct: 665 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSKNFVSDPRDVAKPGDIVRVKVLDVDIPR 724

Query: 681 GKIKLSMKVVD 691
            +I L++++ D
Sbjct: 725 KRISLTLRLDD 735


>gi|68250248|ref|YP_249360.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
 gi|68058447|gb|AAX88700.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
          Length = 549

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGIVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|329116949|ref|ZP_08245666.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020]
 gi|326907354|gb|EGE54268.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020]
          Length = 407

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S  RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLAGIDGLVHISQISHNRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+E  + +        +  G V ++  FGAF+   G  DGLVH+++LS ER      V
Sbjct: 178 EAAKEARQEVFSKLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           V  G+ V VK+L  D+  G++ LS+K
Sbjct: 237 VSVGEEVEVKVLSIDEEAGRVSLSLK 262


>gi|160889663|ref|ZP_02070666.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492]
 gi|156860655|gb|EDO54086.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492]
          Length = 704

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I+D+ E  ++  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 621 VRTISDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLSQLADRFISDPNEVVSIHQH 679

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           + VK+L  D DR +I+L+MK V+QN
Sbjct: 680 IRVKVLSIDMDRKRIQLTMKGVEQN 704


>gi|330895742|gb|EGH28031.1| RNA binding S1 [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 741

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 616 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 675

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 676 DIPRKRVGLSMRMSD 690


>gi|153941510|ref|YP_001391062.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum F str. Langeland]
 gi|152937406|gb|ABS42904.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum F str.
           Langeland]
 gi|295319111|gb|ADF99488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1-like protein [Clostridium botulinum F str.
           230613]
          Length = 638

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + +G+V +  DFGAF+   G  DGL+H+S++S  RV K  D +K GD + V +LD 
Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGDKIKVYILDI 535

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K+ LS+K + ++  K +
Sbjct: 536 DKENKKLALSIKKLIEDPWKSV 557



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105]
 gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105]
          Length = 243

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 27/206 (13%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R DGR+   +R+IS +    +   GS +   GDT  +   ++    +++    L G  
Sbjct: 5   QARPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSV----EDKVPGFLKGKN 60

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLR 424
           +      Y  LP +T   SRM   + R    GR      L  RA+   +        TL+
Sbjct: 61  QGWLTAEYGMLPRSTH--SRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERTLK 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDF 473
           I  ++ ++DG +  A++ G+ +A+ DA       G     PI + VA +++G+V    + 
Sbjct: 119 IDCDVIQADGGTRTASITGAMVAVADAIGKLIANGALPENPIKQFVAAVSVGVV----NG 174

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            ++ D++ DED     D  V  T+ G
Sbjct: 175 QVVLDLNYDEDSTCETDLNVVMTEKG 200


>gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555]
 gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016]
 gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555]
 gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 248

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R +       +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASI----EDKVPPFLKGRGE 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 YN +P AT      +++R G    R +   R+  RA+  V+   A    T+ + 
Sbjct: 57  GWITCEYNMIPRATQVRKARDINR-GRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             PI   V+ +++G+V D      
Sbjct: 116 CDVIQADGGTRTASISGAFVALVDAVNKLHKQNPFTIYPIRDFVSAVSVGIVNDTR---- 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED    +D  V  TDSG
Sbjct: 172 MLDLCYLEDSRAKVDMNVVMTDSG 195


>gi|332308524|ref|YP_004436375.1| Tex-like protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175853|gb|AEE25107.1| Tex-like protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 776

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S++D+ E   I +G V  V +FGAFV     +DGLVHIS ++ + ++   ++VK 
Sbjct: 637 KEGVSSLSDLKE-GMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKFISDPREIVKT 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+++ D  R ++  +M++ D
Sbjct: 696 GDIVKVKVMEVDVARKRVSFTMRLND 721


>gi|311694257|gb|ADP97130.1| ribosomal S1 synthesis/modification protein [marine bacterium HP15]
          Length = 564

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ ++T+  E+    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLETLTEGMEI----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 231 PSEIVNVGDEISVKVLKFDRERNRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+ K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGSKV-KARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVDVMIL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGIK 347



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD V   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVETVILSVDPERER 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|260584655|ref|ZP_05852401.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
 gi|260157678|gb|EEW92748.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
          Length = 731

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G +  V+DFGAFV     +DGLVHIS++    V   SDVV  GD  TVWV  +D   +G
Sbjct: 659 QGTIRNVVDFGAFVDIGVKQDGLVHISRMKKGFVKHPSDVVAVGDIVTVWVTEIDM-KKG 717

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 718 RVSLSM 723


>gi|212703198|ref|ZP_03311326.1| hypothetical protein DESPIG_01240 [Desulfovibrio piger ATCC 29098]
 gi|212673464|gb|EEB33947.1| hypothetical protein DESPIG_01240 [Desulfovibrio piger ATCC 29098]
          Length = 487

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ DD G  +I   SL+  +A  +      D      + +G+VV++  FGAFV      +
Sbjct: 258 VSKDDKGRTRI---SLSRKKAEGDPWLQAADRLAAGTVVEGKVVRIAPFGAFVELLPGVE 314

Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH+S++S T+RV K  DVV  GD + VK+ + + +  +I LS++
Sbjct: 315 GLVHLSEMSWTKRVNKAEDVVNVGDVISVKIKEINVESRRISLSLR 360



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V    +G++ ++  FGAF+      +G++H+S+LS  RV    + V  GD V  KLL   
Sbjct: 200 VGDTVEGRITRLASFGAFMELAPGVEGMIHLSELSWSRVNSADEAVAVGDVVRAKLLSVS 259

Query: 678 -DDRGKIKLSM 687
            DD+G+ ++S+
Sbjct: 260 KDDKGRTRISL 270


>gi|138893885|ref|YP_001124338.1| S1 RNA-binding domain-containing protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265398|gb|ABO65593.1| S1 RNA binding domain protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 721

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  GD   VWV+ +D   +G
Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDV-AKG 710

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 711 RISLSM 716


>gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
 gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
          Length = 254

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 23/202 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+ + +R +      ++   GS L   GDT+ +   T+    +++      G  +
Sbjct: 1   MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATV----EDKVPPFAKGEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   R+ G      RL  RA+  V+   A    TL I  
Sbjct: 57  GWITAEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +A       L++ G    +P+   VA +++G+V DG++ +  
Sbjct: 117 DVIQADGGTRTAAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIV-DGEEIL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS 498
            D++ +ED    +D  V  T S
Sbjct: 174 -DLNFEEDSKALVDMNVVMTGS 194


>gi|85060299|ref|YP_456001.1| hypothetical protein SG2321 [Sodalis glossinidius str. 'morsitans']
 gi|84780819|dbj|BAE75596.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 779

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS   +     VVK GD V VK+++ D  R
Sbjct: 653 VLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFIDDPHKVVKAGDIVKVKVMEVDIAR 712

Query: 681 GKIKLSMKVVDQNTGK 696
            +I LSM+ +D+  G+
Sbjct: 713 KRIALSMR-LDERPGE 727


>gi|145639201|ref|ZP_01794808.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
 gi|145271763|gb|EDK11673.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
 gi|309750777|gb|ADO80761.1| 30S ribosomal protein S1 [Haemophilus influenzae R2866]
          Length = 549

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E  + + ++ E +++ KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREQVLENLVEGSEV-KGIVKNLTEYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV   S++V  GD V VK+L FD DR ++ L +K + Q+
Sbjct: 223 MAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQD 265



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  + D+G FV
Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +    S VV  GDTV V +L+ D +R +I L +K    N
Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKAN 352


>gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
 gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
          Length = 250

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 23/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R IS  + + +   GS L   G+T+ +   ++    D +    L G+ +
Sbjct: 6   LRNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASV----DNKVPPFLRGSGQ 61

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  S R +   RL  R++   +        T+ +  
Sbjct: 62  GWVTAEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDC 121

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LAL             A  P   PVA +++G V    D  IL
Sbjct: 122 DVLQADGGTRTASITGAFLALAGAVRSLIAGGRIAASPFRMPVAAVSIGKV----DGQIL 177

Query: 477 SDISGDEDHLGHMDFKVAGTDSGI 500
           +D+   ED    +DF V G  +G+
Sbjct: 178 TDLDYSEDSRAEVDFNVVGNGNGV 201


>gi|239994307|ref|ZP_04714831.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
          Length = 556

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   V +  AK N      V ++  ++ E E++ E    + ++ E ++I
Sbjct: 141 VRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESSAERETLLANLEEGHEI 195

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD ++ 
Sbjct: 196 -KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQ 253

Query: 682 KIKLSMK 688
           ++ L MK
Sbjct: 254 RVSLGMK 260



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  GQV  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 275 PEGTKI-NGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S  +  +  D V   K+GD +   +L  D +R
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNKSGE--DAVRDYKKGDEISAVVLQVDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 427 ERISLGVKQIEED 439


>gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 500

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
 gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
          Length = 247

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R +  +VG+L +  GS+    G+T+A+  V  G  E +    +L    R
Sbjct: 12  LRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATV-YGPHEVQNKAKALH--DR 68

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
               + +     +TGE  +     R+      + RR     +         + I  ++ +
Sbjct: 69  VLLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQ 128

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG--HM 489
           +DG + +A +   +LAL++AG+P+   V+   +  V D      L DI+  E+  G   +
Sbjct: 129 ADGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTP----LMDINYLEESTGGPQL 184

Query: 490 DFKVAGTDSGITAMQMDMKI 509
              +      I   QMD ++
Sbjct: 185 TLAILPKSDKIVLFQMDSRL 204



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 19/199 (9%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVG---KIPGGYL 78
           Q+DG+     G T  LATV     +++      D   L V +   T++ G   K P    
Sbjct: 34  QADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLLNVQFGMATFSTGERKKKP---- 89

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
           R + + TE  +++ R  + +I  L +   +++  + + V+Q D     HV  + A + AL
Sbjct: 90  RGDRKATELSMMVRRTFEAAI--LINLYPRSQIDIYVQVLQAD--GGNHVACINAVTLAL 145

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLMVELEANQL 195
           + +G+P +  V    V ++N   +++   L+E  G   L L +    D +++ ++++ +L
Sbjct: 146 INAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLTLAILPKSDKIVLFQMDS-RL 204

Query: 196 SEDVVLDAIIFGHNECKPV 214
             D +   +      CK +
Sbjct: 205 HMDNMDKVLALAMKGCKDI 223


>gi|153006639|ref|YP_001380964.1| RNA-binding S1 domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030212|gb|ABS27980.1| RNA binding S1 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 527

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ G V  V D+GAFV   G  +GLVH+S+LS +RV+K  D++  GD V V++L  D+  
Sbjct: 322 VFDGVVTSVQDYGAFVDIGGV-EGLVHVSELSWDRVSKPQDLLTAGDAVQVQVLRIDEDP 380

Query: 682 K----IKLSMKVV 690
           K    I LS+K +
Sbjct: 381 KKGERIGLSVKTL 393


>gi|47207907|emb|CAF89868.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1310

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 48/91 (52%), Gaps = 17/91 (18%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDF 677
           IY G+V  +M FG FV   G R   +GLVH+S+L  E RVA  +DVV +G  V VK+L  
Sbjct: 234 IYSGKVCSIMQFGCFVQLEGLRKRWEGLVHVSELRKEGRVADVADVVTKGQKVQVKVLSV 293

Query: 678 DDRGKIKLSMKV------------VDQNTGK 696
               K  LSMK             VDQ TG+
Sbjct: 294 TG-TKASLSMKASHLGCFHEEESDVDQVTGE 323


>gi|220911765|ref|YP_002487074.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
 gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 830

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I+D+ +   + +G V  V  FGAFV     +DGLVH+S L+   V+   +VVK G
Sbjct: 652 EGIEKISDL-KPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSG 710

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK+L+ D +R +I L++++ D+
Sbjct: 711 QVVRVKVLEADPERKRISLTLRLDDE 736


>gi|207743011|ref|YP_002259403.1| rna-binding protein [Ralstonia solanacearum IPO1609]
 gi|206594408|emb|CAQ61335.1| putative rna-binding protein [Ralstonia solanacearum IPO1609]
          Length = 180

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 66  VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 125

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ D+    P
Sbjct: 126 NRIGLTMRLTDEPGQAP 142


>gi|207724157|ref|YP_002254555.1| rna-binding protein [Ralstonia solanacearum MolK2]
 gi|206589367|emb|CAQ36329.1| rna-binding protein [Ralstonia solanacearum MolK2]
          Length = 222

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 108 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 167

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M++ D+    P
Sbjct: 168 NRIGLTMRLTDEPGQAP 184


>gi|319788548|ref|YP_004148023.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317467060|gb|ADV28792.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 787

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +AA+  E +  I D+     + +G V  V  FGAFV     +DGLVHIS LS   V  
Sbjct: 638 EFKAAKFAEGVEDIKDL-RPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSERYVKD 696

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             DVVK GD V VK+L+ D  R +I L+ ++ D+
Sbjct: 697 PRDVVKAGDIVKVKVLEVDVARKRIALTCRMSDE 730


>gi|237797943|ref|ZP_04586404.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020794|gb|EGI00851.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 773

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 647 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 707 DIPRRRVGLSMRMSD 721


>gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 399

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  V DFG FV   GA DGLVH+S++S  RV    +V+K GD V V +L+ D +R
Sbjct: 231 VRDGVVSSVCDFGVFVDIGGA-DGLVHLSEISWSRVKHPGEVLKVGDKVKVAILNIDHER 289

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 290 KRIALSIK 297



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I +G + ++  FGAF       +GL+HIS++  ER+    +V+ EG  V  +++  
Sbjct: 312 QLGQIVEGTITQLASFGAFARIEDGVEGLIHISEMGDERIQHPREVLSEGQVVQARIIRI 371

Query: 678 DD-RGKIKLSMKV 689
           D  R ++ LS+++
Sbjct: 372 DPARKRMGLSLRL 384


>gi|254448853|ref|ZP_05062309.1| RNA binding S1 domain protein [gamma proteobacterium HTCC5015]
 gi|198261543|gb|EDY85832.1| RNA binding S1 domain protein [gamma proteobacterium HTCC5015]
          Length = 774

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVHIS +S E V    DVVK G+ V VK++  D  R
Sbjct: 649 ILEGVVTNVTHFGAFVDVGVHQDGLVHISAMSHEFVKDPRDVVKAGEVVKVKVMAVDVAR 708

Query: 681 GKIKLSMKVVD 691
            +I LSM++ D
Sbjct: 709 KRIGLSMRLDD 719


>gi|187779599|ref|ZP_02996072.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC
           15579]
 gi|187773224|gb|EDU37026.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC
           15579]
          Length = 638

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 10/101 (9%)

Query: 607 REMIRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           RE++++I D          E + I +G+V +  +FGAFV   G  DGL+H+S++S  RV 
Sbjct: 458 REILKTIRDEHIEETWASLEKDTIVEGEVKRFTNFGAFVEINGV-DGLLHVSEISWGRVE 516

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +  D +K GD + V +LD D +  K+ LS+K + ++  K +
Sbjct: 517 RPEDALKVGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 557



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G+VV+   FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +   K I
Sbjct: 569 GKVVRFASFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSAEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|50123042|ref|YP_052209.1| putative RNA binding protein [Pectobacterium atrosepticum SCRI1043]
 gi|49613568|emb|CAG77019.1| putative RNA binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 777

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  R
Sbjct: 652 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|300864265|ref|ZP_07109145.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337730|emb|CBN54291.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 746

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 8/98 (8%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I+ I+D+  V    +G V  V +FGAFV     +DGLVHISQL+   V     +VK 
Sbjct: 634 KEGIKEISDL-NVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKLIVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQN------TGKP 697
           G  V V++L+ +++ K I LSMK+ +Q       T KP
Sbjct: 693 GQVVKVRVLEVNEKLKRISLSMKLQEQQNSDRKATSKP 730


>gi|227510734|ref|ZP_03940783.1| S1 domain RNA-binding protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189855|gb|EEI69922.1| S1 domain RNA-binding protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 722

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS++S   V   S +V  GD  TVW+  +D  DR 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDV-DRH 711

Query: 682 KIKLSM 687
           +I+LSM
Sbjct: 712 RIQLSM 717


>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
          Length = 495

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGA 635
           I +Q  AK+   D     +  S  A +E  +  +R       +  ++  G V  +++FGA
Sbjct: 168 IGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFGA 227

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV   G  DGLVH+S+LS + +    +VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 228 FVDLGGV-DGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQED 285



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   +T++VK++D D
Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDID 355

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 356 LERRRISLSLK 366


>gi|290961257|ref|YP_003492439.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
 gi|260650783|emb|CBG73900.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
          Length = 498

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|209521839|ref|ZP_03270516.1| RNA binding S1 domain protein [Burkholderia sp. H160]
 gi|209497722|gb|EDZ97900.1| RNA binding S1 domain protein [Burkholderia sp. H160]
          Length = 784

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D +P +  + +G V  V  FGAF+     +DGLVH+S +ST+ V    +VVK
Sbjct: 644 REGVEKVSDLIPGM--VLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVK 701

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            G  V VK+L+ D  R +I L+M++ D+
Sbjct: 702 AGQIVKVKVLEVDVKRQRIALTMRLDDE 729


>gi|187929004|ref|YP_001899491.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12J]
 gi|187725894|gb|ACD27059.1| RNA binding S1 domain protein [Ralstonia pickettii 12J]
          Length = 777

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 662 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 721

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 722 NRIGLTMRLSDE 733


>gi|70733781|ref|YP_257421.1| S1 RNA-binding domain-containing protein [Pseudomonas fluorescens
           Pf-5]
 gi|68348080|gb|AAY95686.1| S1 RNA binding domain protein [Pseudomonas fluorescens Pf-5]
          Length = 873

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 746 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 805

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 806 DIPRKRVGLSMRMGD 820


>gi|295676889|ref|YP_003605413.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002]
 gi|295436732|gb|ADG15902.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002]
          Length = 783

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D +P +  + +G V  V  FGAF+     +DGLVH+S +ST+ V    +VVK
Sbjct: 644 REGVEKVSDLIPGM--VLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVK 701

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            G  V VK+L+ D  R +I L+M++ D+
Sbjct: 702 AGQIVKVKVLEVDVKRQRIALTMRLDDE 729


>gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative,
           expressed [Oryza sativa Japonica Group]
 gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group]
          Length = 402

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ GDT+ V +L  D
Sbjct: 254 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 312

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 313 RERGRVSLSTKKLEPTPG 330


>gi|300112899|ref|YP_003759474.1| 30S ribosomal protein S1 [Nitrosococcus watsonii C-113]
 gi|299538836|gb|ADJ27153.1| ribosomal protein S1 [Nitrosococcus watsonii C-113]
          Length = 561

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE  A RE +  ++ + E  K  KG V  + D+GAFV   G  DGL+HI+ +S +R+   
Sbjct: 176 AEYSAEREAL--LSSLGE-GKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHP 231

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           S+VV  GD + V++L FD +R ++ L +K + ++  K + 
Sbjct: 232 SEVVNIGDDITVQVLKFDKERQRVSLGLKQMGEDPWKDLA 271



 Score = 37.4 bits (85), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G++  + DFG FV   G  DGLVH+S +S    A   +++   K+GD V   +L  D +R
Sbjct: 369 GEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVVLAIDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++ +
Sbjct: 427 ERISLGVKQLEDD 439


>gi|239931899|ref|ZP_04688852.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
 gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
 gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|227512321|ref|ZP_03942370.1| RNA-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227522407|ref|ZP_03952456.1| RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227084496|gb|EEI19808.1| RNA-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227090465|gb|EEI25777.1| RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 169

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  + +FGAF+     R GLVHIS++S   V    DV+K GD V VK+L  
Sbjct: 4   EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDEVTVKVLKI 63

Query: 678 DDRGKIKLSMK 688
           +   KI LS++
Sbjct: 64  EGNNKISLSIR 74


>gi|254391555|ref|ZP_05006755.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|294812024|ref|ZP_06770667.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|326440254|ref|ZP_08214988.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|197705242|gb|EDY51054.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|294324623|gb|EFG06266.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
          Length = 496

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 294 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 353

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 354 DLERRRISLSLKQANESFG 372



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 212 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 270

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 271 RERVSLSLKATQED 284


>gi|138896517|ref|YP_001126970.1| general stress protein 13 [Geobacillus thermodenitrificans NG80-2]
 gi|134268030|gb|ABO68225.1| Polyribonucleotide nucleotidyltransferase, general stress protein
           13 [Geobacillus thermodenitrificans NG80-2]
          Length = 124

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I KG+V  +  +GAFV   G   GL+HIS++S   V    D V  GD V VK+LD D + 
Sbjct: 12  IVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVKVLDVDYKA 71

Query: 681 GKIKLSMKVVD 691
           G+  LS+K ++
Sbjct: 72  GRASLSLKALE 82


>gi|330977298|gb|EGH77252.1| RNA binding S1 [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 638

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ 
Sbjct: 513 QLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEV 572

Query: 678 D-DRGKIKLSMKVVD 691
           D  R ++ LSM++ D
Sbjct: 573 DIPRKRVGLSMRMSD 587


>gi|269126870|ref|YP_003300240.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
           DSM 43183]
 gi|268311828|gb|ACY98202.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 795

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS +S   V+   +VVK GD V V++LD D  R
Sbjct: 665 VLEGVVTNVAAFGAFVDVGVHQDGLVHISAMSKNYVSDPREVVKPGDIVKVRVLDVDIPR 724

Query: 681 GKIKLSMKVVD 691
            +I L++++ D
Sbjct: 725 KRISLTLRLDD 735


>gi|228476209|ref|ZP_04060912.1| RNA binding S1 domain protein [Staphylococcus hominis SK119]
 gi|314937285|ref|ZP_07844627.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269694|gb|EEK11193.1| RNA binding S1 domain protein [Staphylococcus hominis SK119]
 gi|313654581|gb|EFS18331.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
          Length = 133

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            + GKI LS+K       +P
Sbjct: 64  AEDGKISLSIKKAKDRPRRP 83


>gi|254514352|ref|ZP_05126413.1| general secretion pathway protein J [gamma proteobacterium NOR5-3]
 gi|219676595|gb|EED32960.1| general secretion pathway protein J [gamma proteobacterium NOR5-3]
          Length = 786

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  ITD+ +++ + +G V  V  FGAFV     +DGLVHIS +S + +    +  K GD 
Sbjct: 642 IEKITDL-KLDMVLEGTVTNVTSFGAFVDVGVHQDGLVHISAMSDKFIKDPREAAKAGDI 700

Query: 670 VWVKLLDFD-DRGKIKLSMKVVD 691
           V VK++  D  R ++ LSM++ D
Sbjct: 701 VKVKVMAIDVPRKRVGLSMRLTD 723


>gi|186476164|ref|YP_001857634.1| RNA-binding S1 domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184192623|gb|ACC70588.1| RNA binding S1 domain protein [Burkholderia phymatum STM815]
          Length = 780

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  I+D+     + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKISDL-SPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V VK+L+ D  R +I L+M++ D
Sbjct: 703 GQIVKVKVLEVDVKRQRISLTMRMDD 728


>gi|322387834|ref|ZP_08061442.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
 gi|321141336|gb|EFX36833.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
          Length = 709

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  
Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKKFIKHPSQVVSV 680

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQNT 694
           GD  TVWVK +D   R K+ LS+   D++ 
Sbjct: 681 GDLVTVWVKKIDV-QREKVNLSLLAPDESN 709


>gi|299538552|ref|ZP_07051835.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726139|gb|EFI66731.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 378

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 589 DDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D G  ++  S  A +EA +    +++ +  +   +  G+V ++  FGAF+   G  DGLV
Sbjct: 155 DKGKNRLILSHRAVVEAEKASQKKNVINQIKAGDVLDGKVQRLASFGAFIDLGGI-DGLV 213

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           HISQ+S E V+  S+V+ EG  V VK+L  D +  +I LS+K
Sbjct: 214 HISQVSHEHVSDVSEVLAEGQDVKVKVLSVDPENERISLSIK 255



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++  FGAFV      +GLVHISQ++ + +    + +KEG  V VK+LD + D 
Sbjct: 274 ILDGRVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQVKVLDVNADE 333

Query: 681 GKIKLSMKVVDQN 693
           G++ LS+K + +N
Sbjct: 334 GRLALSIKELLEN 346


>gi|154684582|ref|YP_001419743.1| hypothetical protein RBAM_000720 [Bacillus amyloliquefaciens FZB42]
 gi|308171954|ref|YP_003918659.1| polyribonucleotide nucleotidyltransferase or phosphorylase
           [Bacillus amyloliquefaciens DSM 7]
 gi|311070710|ref|YP_003975633.1| hypothetical protein BATR1942_18925 [Bacillus atrophaeus 1942]
 gi|154350433|gb|ABS72512.1| YabR [Bacillus amyloliquefaciens FZB42]
 gi|307604818|emb|CBI41189.1| putative RNA degradation protein; polyribonucleotide
           nucleotidyltransferase or phosphorylase [Bacillus
           amyloliquefaciens DSM 7]
 gi|310871227|gb|ADP34702.1| hypothetical protein BATR1942_18925 [Bacillus atrophaeus 1942]
 gi|328551764|gb|AEB22256.1| hypothetical protein BAMTA208_00320 [Bacillus amyloliquefaciens
           TA208]
 gi|328910024|gb|AEB61620.1| hypothetical protein LL3_00065 [Bacillus amyloliquefaciens LL3]
          Length = 128

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G++  + +FGAFV   G   GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINEHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
          Length = 488

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   ++VV  GD V V++LD D D
Sbjct: 213 QVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   +TV+VK++D D
Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVTVDETVYVKVIDID 355

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 356 LERRRISLSLK 366


>gi|219883220|ref|YP_002478382.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
 gi|219867345|gb|ACL47683.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
          Length = 763

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R  +++I+D+  V    +G V  V +FGAFV     +DGLVH+SQL+   V+    +VK 
Sbjct: 634 RADVKAISDL-SVGMQLEGMVTNVANFGAFVDIGVHQDGLVHVSQLADRFVSDPKQIVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMK 688
           G  V V++L+ D++ K I LSM+
Sbjct: 693 GQVVNVRVLEVDEKLKRISLSMR 715


>gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
          Length = 503

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 297 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 356

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 357 DLERRRISLSLKQANESFG 375



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 215 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 274 RERVSLSLKATQED 287


>gi|309782606|ref|ZP_07677329.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308918697|gb|EFP64371.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 788

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAF+     +DGLVH+S LST+ V    +VVK G  V VK+++ D  R
Sbjct: 673 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKR 732

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 733 NRIGLTMRLSDE 744


>gi|291562742|emb|CBL41558.1| Transcriptional accessory protein [butyrate-producing bacterium
           SS3/4]
          Length = 716

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHISQ+S + +    + V  GD V VK+L  D  +
Sbjct: 645 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSRKYIKHPLEAVSVGDIVEVKVLGVDMAK 704

Query: 681 GKIKLSM 687
            +I LSM
Sbjct: 705 KRISLSM 711


>gi|323340110|ref|ZP_08080375.1| S1 RNA-binding domain protein [Lactobacillus ruminis ATCC 25644]
 gi|323092487|gb|EFZ35094.1| S1 RNA-binding domain protein [Lactobacillus ruminis ATCC 25644]
          Length = 164

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G++  + +FGAFV     + GLVHIS++S   V    DV+  GDTV VK+L  
Sbjct: 4   EVGSKVSGKISGITNFGAFVDLGDKKTGLVHISEVSDGFVKDIHDVLTVGDTVTVKVLSV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKISLSIR 74


>gi|224476595|ref|YP_002634201.1| 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421202|emb|CAL28016.1| putative 30S ribosomal protein S1 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 392

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + I +G+VV++ DFGAFV       GLVHIS++S + +   S+V++    V VK+L  D+
Sbjct: 279 DSIIEGRVVRLTDFGAFVEIAAGVQGLVHISEISRKHIGTPSEVLEPNQEVTVKVLSIDE 338

Query: 680 RG-KIKLSMK 688
              +I LS+K
Sbjct: 339 ESERISLSIK 348



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G + ++ +FGAFV   G  DGLVH+S+LS E V K  DVV  GD V VK+   + D 
Sbjct: 196 VIEGTIARLTNFGAFVDIGGV-DGLVHVSELSHEHVDKPEDVVSVGDKVNVKVKSVEQDS 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 7/86 (8%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I ++ E +KI  GQV KV D    V   G +  G+V ISQLST  +   ++VVKEGD V 
Sbjct: 10  INEIKEGDKI-SGQVQKVEDKQVIVDVDGGKFSGIVPISQLSTHHIDSPNEVVKEGDAVE 68

Query: 671 -WVKLLDFDDR---GKIKLSMKVVDQ 692
            +V  ++ D+    G   LS++ ++Q
Sbjct: 69  AYVTKVEVDEENESGAYILSIRQLEQ 94


>gi|322375346|ref|ZP_08049859.1| S1 RNA binding domain protein [Streptococcus sp. C300]
 gi|321279609|gb|EFX56649.1| S1 RNA binding domain protein [Streptococcus sp. C300]
          Length = 709

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  
Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 680

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693
           GD  TVWVK +D  +R K+ LS+   D+ 
Sbjct: 681 GDLVTVWVKKID-TEREKVNLSLLAPDET 708


>gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14]
 gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14]
          Length = 496

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|167770447|ref|ZP_02442500.1| hypothetical protein ANACOL_01792 [Anaerotruncus colihominis DSM
           17241]
 gi|167667042|gb|EDS11172.1| hypothetical protein ANACOL_01792 [Anaerotruncus colihominis DSM
           17241]
          Length = 163

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAF+   G + G+VHIS++++  V + +D +     V VK++  
Sbjct: 4   EVGSILEGRVTGITKFGAFIELPGGKTGMVHISEVASSYVKEITDYLSMNQMVKVKIIGI 63

Query: 678 DDRGKIKLSMK 688
              GK+ LS+K
Sbjct: 64  TPEGKVSLSIK 74


>gi|260776375|ref|ZP_05885270.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607598|gb|EEX33863.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
          Length = 556

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLESLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1]
          Length = 254

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +SV+  I  KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 1   MSVWATILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 55  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++ +ED     D  V  + +G
Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDVNVVMSGNG 209


>gi|307326059|ref|ZP_07605257.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306888281|gb|EFN19269.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 504

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|314936391|ref|ZP_07843738.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80]
 gi|313655010|gb|EFS18755.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80]
          Length = 392

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           N + +G+V+++ +FGAFV       GLVHIS+++ + +   S+V++ G  V VK+L  D 
Sbjct: 279 NDVIEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDE 338

Query: 679 DRGKIKLSMK 688
           D  +I LS+K
Sbjct: 339 DNERISLSIK 348



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  G  V VK+   + D 
Sbjct: 196 VIKGKVARLTNFGAFVDIGGV-DGLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  GA+ +G++ ISQLST  +   S+++ EGD + 
Sbjct: 10  INDIKEGDKV-TGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++ D+  +
Sbjct: 69  AYVTKIEIDEENE 81


>gi|90962328|ref|YP_536244.1| hypothetical protein LSL_1356 [Lactobacillus salivarius UCC118]
 gi|301300307|ref|ZP_07206514.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90821522|gb|ABE00161.1| S1-type RNA-binding domain [Lactobacillus salivarius UCC118]
 gi|300214979|gb|ADJ79395.1| S1-type RNA-binding domain protein [Lactobacillus salivarius CECT
           5713]
 gi|300852080|gb|EFK79757.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 154

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + DFGAFV     + GLVHIS++S   V    +V+  GD V VK+L  
Sbjct: 4   EVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLSV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS+K
Sbjct: 64  SDDGKIGLSIK 74


>gi|269796749|ref|YP_003316204.1| transcriptional accessory protein [Sanguibacter keddieii DSM 10542]
 gi|269098934|gb|ACZ23370.1| transcriptional accessory protein [Sanguibacter keddieii DSM 10542]
          Length = 816

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V     FGAFV     +DGLVH+S LS   V+   +VVK GD V VK+L  D  R
Sbjct: 660 VLEGVVTNCAAFGAFVDVGVHQDGLVHVSALSDRFVSDPREVVKPGDVVTVKVLTVDVRR 719

Query: 681 GKIKLSMKVVDQNTG 695
           G+I L++++ D   G
Sbjct: 720 GRIGLTLRLEDPVPG 734


>gi|313898405|ref|ZP_07831942.1| Tex-like protein N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956787|gb|EFR38418.1| Tex-like protein N-terminal domain protein [Clostridium sp. HGF2]
          Length = 715

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 614 TDVPEVNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           +DV E+  ++     +G V  V+DFGAFV      DGLVHIS++S  R+A  SD V  GD
Sbjct: 632 SDVLELEDLHIGDQLEGVVRNVVDFGAFVDIGLHEDGLVHISKMSRHRIAHPSDKVSIGD 691

Query: 669 --TVWVKLLDFDDRGKIKLSM 687
              VWV  +D +++ K++LS+
Sbjct: 692 IVKVWVYNID-EEKQKVQLSL 711


>gi|229822883|ref|ZP_04448953.1| hypothetical protein GCWU000282_00173 [Catonella morbi ATCC 51271]
 gi|229787696|gb|EEP23810.1| hypothetical protein GCWU000282_00173 [Catonella morbi ATCC 51271]
          Length = 417

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V ++ DFGAFV      +GLVHISQ+S E +A   + ++EG  V VK+L  + + 
Sbjct: 290 VLKGTVKRLTDFGAFVEVLPGVEGLVHISQISHEHIATPGEKLQEGQEVDVKVLSVNPED 349

Query: 681 GKIKLSMKVVDQNTGKP 697
            ++ LS+K + +   +P
Sbjct: 350 QRLSLSIKALLERPARP 366



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++   +AE E A +   ++ ++ E   I +G V ++ +FGAFV+  G  DGLVH+S++S 
Sbjct: 179 LSHKEIAERERAEKRAAALANLVE-GSIVEGTVARLTNFGAFVNL-GDVDGLVHLSRISH 236

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             + K  DV+  GD V VK+L  + + G++ LS+K
Sbjct: 237 SHIRKPGDVLNVGDKVNVKVLSVNPEDGRVSLSIK 271


>gi|293365555|ref|ZP_06612264.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307703510|ref|ZP_07640452.1| protein tex [Streptococcus oralis ATCC 35037]
 gi|291315923|gb|EFE56367.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307622917|gb|EFO01912.1| protein tex [Streptococcus oralis ATCC 35037]
          Length = 709

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  
Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 680

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693
           GD  TVWVK +D  +R K+ LS+   D+ 
Sbjct: 681 GDLVTVWVKKID-TEREKVNLSLLAPDET 708


>gi|229820681|ref|YP_002882207.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566594|gb|ACQ80445.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
          Length = 488

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     V K G+ V+VK++D D
Sbjct: 296 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD + D
Sbjct: 213 QIRNGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVELD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1]
 gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1]
 gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2]
 gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2]
 gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1]
 gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1]
 gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2]
 gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1]
 gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2]
 gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1]
 gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1]
 gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1]
 gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1]
 gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3]
 gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2]
 gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1]
 gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1]
 gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1]
 gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2]
 gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1]
 gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2]
 gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3]
 gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2]
 gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3]
 gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1]
 gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1]
 gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2]
 gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3]
 gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1]
 gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2]
 gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2]
 gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1]
 gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1]
 gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1]
 gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266]
          Length = 254

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    G  SR G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GVPISKPVAG----IAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA       G  +S+P+ G    I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED     D  V  + SG
Sbjct: 188 DLAYEEDSRADTDMNVVMSGSG 209



 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 30/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 85  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 139 TRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 198

Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
             +++ +SG+ D V +    E    + +++ + +      C  + +A S+
Sbjct: 199 TDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSE 248


>gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 238

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GDD  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDD--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|310639524|ref|YP_003944282.1| RNA binding s1 domain protein [Paenibacillus polymyxa SC2]
 gi|309244474|gb|ADO54041.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2]
          Length = 171

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  GKI LS+K   Q   KP
Sbjct: 64  DKDGKIGLSIK---QTIDKP 80


>gi|188585248|ref|YP_001916793.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349935|gb|ACB84205.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 727

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G++  V+DFGAFV      DGL+HIS LS + V    ++V  GD V V+++  D DR
Sbjct: 660 ILEGEIRNVVDFGAFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDR 719

Query: 681 GKIKL 685
           G+I L
Sbjct: 720 GRIGL 724


>gi|158318407|ref|YP_001510915.1| RNA-binding S1 domain-containing protein [Frankia sp. EAN1pec]
 gi|158113812|gb|ABW16009.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
          Length = 901

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVH+S +S   V+   +V K GD V VK+LD D  R
Sbjct: 662 ILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVRVKVLDVDIPR 721

Query: 681 GKIKLSMKVVDQ 692
            +I L++++ D+
Sbjct: 722 KRISLTLRLDDE 733


>gi|73541033|ref|YP_295553.1| RNA binding S1 [Ralstonia eutropha JMP134]
 gi|72118446|gb|AAZ60709.1| RNA binding S1 [Ralstonia eutropha JMP134]
          Length = 802

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVHIS LS + V    +VVK G  V VK+++ D  R
Sbjct: 683 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVKVKVMEVDVMR 742

Query: 681 GKIKLSMKVVD---QNTGKP 697
            +I LSM++ D   Q + +P
Sbjct: 743 NRIGLSMRLDDEPGQTSSRP 762


>gi|56479339|ref|YP_160928.1| hypothetical protein ebA6834 [Aromatoleum aromaticum EbN1]
 gi|56315382|emb|CAI10027.1| conserved hypothetical protein, putative s1 rna binding domain
           protein [Aromatoleum aromaticum EbN1]
          Length = 782

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + ++ D+     + +G V  V +FGAFV     +DGLVHIS L+   V     VVK 
Sbjct: 638 REGVETLKDLAP-GMMLEGTVTNVTNFGAFVDVGVHQDGLVHISALADRFVKDPHSVVKA 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 697 GQVVKVKVLEVDLARKRIALTMRMSDE 723


>gi|329940857|ref|ZP_08290137.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
 gi|329300151|gb|EGG44049.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
          Length = 499

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
          Length = 280

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           VSV+     KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 27  VSVWPTTLGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 80

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 81  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 136

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 137 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIT 196

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++ +ED     D  V  + +G
Sbjct: 197 GSVQAISVGVV----DGIPMLDLAYEEDSRADTDMNVVMSGNG 235



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 52  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 110

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 111 NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 164

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 165 TRTASITGAYVALIDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 224

Query: 174 --LDLFVSGTQDAV 185
             +++ +SG  D V
Sbjct: 225 TDMNVVMSGNGDFV 238


>gi|319946581|ref|ZP_08020815.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
 gi|319746629|gb|EFV98888.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
          Length = 708

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HISQ+S + +   S VV  GD  TVWV  +D  +R 
Sbjct: 637 EGVVRNVVDFGAFVDIGIHEDGLIHISQMSQQFIKHPSQVVSVGDLVTVWVYKIDL-ERE 695

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 696 KVNLSL 701


>gi|227509309|ref|ZP_03939358.1| RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191239|gb|EEI71306.1| RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 169

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  + +FGAF+     R GLVHIS++S   V    DV+K GD V VK+L  
Sbjct: 4   EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDEVTVKVLKI 63

Query: 678 DDRGKIKLSMK 688
           +   KI LS++
Sbjct: 64  EGNNKISLSIR 74


>gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 240

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+   A   + + +  
Sbjct: 59  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GDD  +L
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDD--VL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEEG 197


>gi|149377379|ref|ZP_01895123.1| ribosomal protein S1 [Marinobacter algicola DG893]
 gi|149358303|gb|EDM46781.1| ribosomal protein S1 [Marinobacter algicola DG893]
          Length = 564

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ ++T+  E+    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLETLTEGLEI----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 231 PSEIVNVGDEINVKVLKFDRERNRVSLGLK 260



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTKVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVGVMIL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGIK 347



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD V   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVETVILSVDPERER 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|322391920|ref|ZP_08065384.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
 gi|321145146|gb|EFX40543.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
          Length = 709

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  
Sbjct: 622 RQDVLDIKDL-KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKKFIKHPSQVVSV 680

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQNT 694
           GD  TVWVK +D   R K+ LS+   D++ 
Sbjct: 681 GDLVTVWVKKIDV-QREKVNLSLLAPDESN 709


>gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
 gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
          Length = 502

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|255660000|ref|ZP_05405409.1| protein YhgF [Mitsuokella multacida DSM 20544]
 gi|260847753|gb|EEX67760.1| protein YhgF [Mitsuokella multacida DSM 20544]
          Length = 733

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  + DFGAFV      DGL+HIS+L+  RV    +VV  G  + V ++  D+ R
Sbjct: 658 ILRGTVRNITDFGAFVDIGLHEDGLIHISELAKRRVKHPLEVVSIGQVLRVMVISVDEKR 717

Query: 681 GKIKLSMKVVDQ 692
           G+I LS+K V +
Sbjct: 718 GRIGLSLKRVPE 729


>gi|82750215|ref|YP_415956.1| hypothetical protein SAB0457 [Staphylococcus aureus RF122]
 gi|82655746|emb|CAI80145.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           RF122]
          Length = 133

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG++  +  FGAFV     + GLVHIS+++   V    + +  GD V VK+L  
Sbjct: 4   EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|148263533|ref|YP_001230239.1| 30S ribosomal protein S1 [Geobacter uraniireducens Rf4]
 gi|146397033|gb|ABQ25666.1| SSU ribosomal protein S1P [Geobacter uraniireducens Rf4]
          Length = 584

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++   L E E  +    ++  + E   +  G V  + D+GAFV   G  DGL+H++
Sbjct: 189 GNIVLSRRVLLEEERDKARTTTLATLSE-GDVVDGIVKNIADYGAFVDLGGV-DGLLHVT 246

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S  R+   S+ VK GDT+ VK+L +D ++GKI L +K
Sbjct: 247 DMSWGRLNHPSEAVKVGDTIKVKVLKYDREKGKISLGLK 285



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG+V  + DFG F+      +GLVHIS+LS E++A T D    GD +   +L+ D    K
Sbjct: 480 KGKVTSITDFGVFMEIEEGIEGLVHISELSQEKLASTKDFAAVGDELDAVVLNVDTVEKK 539

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 540 IALSIK 545



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
           +G+VV + D+GAF+      +GLVHIS++S T+RV   S+++  GD V   +L  D    
Sbjct: 306 QGRVVSLTDYGAFIALEEGVEGLVHISEMSWTKRVRHPSELLTVGDNVEALILGVDTSNR 365

Query: 682 KIKLSMKVVDQN 693
           +I L +K  + N
Sbjct: 366 RISLGLKQTEVN 377



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG F+      DGLVH+S +S T+R+    ++  +G TV   +L+ D D  
Sbjct: 393 EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTKRIKHPGELYSKGQTVQAVVLNIDADNE 452

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 453 RLSLGIK 459


>gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2]
          Length = 254

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    G  SR G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GVPISKPVAG----IAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA       G  +S+P+ G    I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED     D  V  + SG
Sbjct: 188 DLAYEEDSRADTDMNVVMSGSG 209



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 30/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 85  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 138

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 139 TRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEEDSRAD 198

Query: 174 --LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
             +++ +SG+ D V +    E    + +++ + +      C  + +A S+
Sbjct: 199 TDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSE 248


>gi|239940449|ref|ZP_04692386.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
 gi|239986932|ref|ZP_04707596.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 11379]
 gi|291443880|ref|ZP_06583270.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
 gi|291346827|gb|EFE73731.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
          Length = 504

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|182439327|ref|YP_001827046.1| 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326779979|ref|ZP_08239244.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|178467843|dbj|BAG22363.1| putative 30S ribosomal protein S1 [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660312|gb|EGE45158.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 505

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|171779310|ref|ZP_02920274.1| hypothetical protein STRINF_01153 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281927|gb|EDT47358.1| hypothetical protein STRINF_01153 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 398

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ +   
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVNVKVLEVNAAA 340

Query: 682 -KIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I KG+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  
Sbjct: 192 EEGAIVKGKVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSI 250

Query: 678 DDR-GKIKLSMK 688
           D+  G++ LS+K
Sbjct: 251 DEEAGRVSLSLK 262


>gi|255994887|ref|ZP_05428022.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saphenum ATCC 49989]
 gi|255993600|gb|EEU03689.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saphenum ATCC 49989]
          Length = 703

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G +V++ ++GAF+      DGL+HIS++S  RV   + V+  GD V  K+L+ D DR +
Sbjct: 585 EGDIVQIKEYGAFLELEPGLDGLIHISEISHSRVENINSVLHIGDNVEAKILEIDKDRRR 644

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 645 ISLSIKAL 652



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 5/75 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V++  ++GAFV   G  DGL+HIS++S  ++   S+V+  GDT+ VK+L  + ++GK
Sbjct: 500 EGKVMRFTEYGAFVDI-GGVDGLLHISEISWGKLKHPSEVLTVGDTINVKILSLNPEKGK 558

Query: 683 IKLSMKVVDQNTGKP 697
           I L  K   QN  +P
Sbjct: 559 ISLGYK---QNMPEP 570


>gi|238927157|ref|ZP_04658917.1| S1 family RNA-binding protein [Selenomonas flueggei ATCC 43531]
 gi|238884939|gb|EEQ48577.1| S1 family RNA-binding protein [Selenomonas flueggei ATCC 43531]
          Length = 154

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + +FGAFV     + GL+HIS+++   V    D +KE D V VK+L  D+RGKI LS+K 
Sbjct: 22  ITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLKEHDKVKVKVLTVDERGKIGLSIKA 81

Query: 690 V 690
           +
Sbjct: 82  L 82


>gi|226366001|ref|YP_002783784.1| transcriptional accessory protein [Rhodococcus opacus B4]
 gi|226244491|dbj|BAH54839.1| transcriptional accessory protein [Rhodococcus opacus B4]
          Length = 807

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 19/149 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGA--KVN----IDDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++   G  +R I+  T A   +N    +DD   +   +  + E+E      R   ++
Sbjct: 565 VRKIVQTSGTGVREIIGNTSALRSLNPADFVDDRFGLPTVTDIIGELEKPGRDPRPEFKT 624

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    + K+         +G V  V  FGAFV     +DGLVH+S +S   V    DVV
Sbjct: 625 ATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVV 684

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           K GD V VK+L+ D+ R +I L++++ D+
Sbjct: 685 KSGDVVTVKVLEVDEARQRIGLTLRLDDE 713


>gi|261855929|ref|YP_003263212.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2]
 gi|261836398|gb|ACX96165.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2]
          Length = 560

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + D+GAF+   G  DGL+HI+ ++ +RV   S+VV  GD V VK+L FD DR
Sbjct: 197 VLRGVVKNLTDYGAFLDLGGI-DGLLHITDMAWKRVKHPSEVVNIGDEVDVKVLKFDRDR 255

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 256 NRVSLGMK 263



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++  T +      VV  GD V V +LD D +R +
Sbjct: 285 GKVTNLTDYGCFVEIDNGVEGLVHVSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRR 344

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 345 ISLGMKQCQAN 355



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGL+H+S LS     + +    K+G+ +   ++  D +R +
Sbjct: 372 GQIKSITDFGVFIGLDGGIDGLIHLSDLSWNEAGEEAVRQFKKGEEIEAVVIAIDPERER 431

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 432 ISLGLKQLESD 442


>gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
 gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
          Length = 503

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  +++ G
Sbjct: 355 DLERRRISLSLKQANESFG 373



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285


>gi|21220480|ref|NP_626259.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|256788388|ref|ZP_05526819.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
 gi|289772280|ref|ZP_06531658.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
 gi|5689891|emb|CAB52054.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|289702479|gb|EFD69908.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
          Length = 502

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|90421783|ref|YP_530153.1| RNA binding S1 [Rhodopseudomonas palustris BisB18]
 gi|90103797|gb|ABD85834.1| RNA binding S1 [Rhodopseudomonas palustris BisB18]
          Length = 782

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS +S   +    +VVK GD V VK+L+ D  R
Sbjct: 655 VLEGAVTNVAAFGAFVDIGVHQDGLVHISAMSRSFIKDPREVVKPGDIVKVKVLEVDVAR 714

Query: 681 GKIKLSMKVVDQNTGK 696
            +I LS+++ D+   K
Sbjct: 715 KRIALSLRLDDEVGAK 730


>gi|302338566|ref|YP_003803772.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293]
 gi|301635751|gb|ADK81178.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293]
          Length = 571

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           +VN I KG V K+ DFGAF+      +GL HIS+LS  +R+    +V+  GD V V +L 
Sbjct: 284 QVNDIVKGTVTKLTDFGAFIELEEGIEGLAHISELSWVKRINHPKEVLNIGDEVDVMILS 343

Query: 677 FD-DRGKIKLSMKVVDQN 693
           +D  +G++ L +K V  N
Sbjct: 344 YDIQQGRVSLGLKQVRPN 361



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V     FGAF+   G  DGL+HI+ +S   V +  D VK+G  V +K++  D
Sbjct: 200 IGDVVTGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDYVKKGQEVELKVIKLD 258

Query: 679 -DRGKIKLSMK 688
            +  KI LS+K
Sbjct: 259 PEEQKINLSLK 269


>gi|239978882|ref|ZP_04701406.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
          Length = 504

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|257064689|ref|YP_003144361.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476]
 gi|256792342|gb|ACV23012.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476]
          Length = 407

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V K++ FGAFV      +GLVHIS+++  R+   + VVK G  V VK+++ + +R
Sbjct: 294 IIDGKVTKIVPFGAFVELGNNVEGLVHISEMAPRRIDTPAQVVKVGQDVKVKVMEVNPER 353

Query: 681 GKIKLSMKVVDQNTG 695
            +I LSMK      G
Sbjct: 354 RRISLSMKAAAAELG 368



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKI 683
           G V  ++DFGAFV   G  DGLVHIS+LS   V   S+VVK G       L    DR +I
Sbjct: 212 GVVSSIVDFGAFVDLGGI-DGLVHISELSWNHVNHPSEVVKVGQEVEVEVLKVELDRERI 270

Query: 684 KLSMKVVDQNTGKP 697
            L +K   Q T  P
Sbjct: 271 SLGLK---QTTEDP 281


>gi|320529060|ref|ZP_08030152.1| S1 RNA binding domain protein [Selenomonas artemidis F0399]
 gi|320138690|gb|EFW30580.1| S1 RNA binding domain protein [Selenomonas artemidis F0399]
          Length = 733

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  ++D+  V  + +G V  + DFGAF+     + GL+HIS++S  RV    DV+  
Sbjct: 639 RQNIVKLSDLA-VGTVLRGTVRNITDFGAFIDIGLKQAGLLHISEMSGRRVRHPLDVLSV 697

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
           GD + V ++  D+ RG+I LS+K
Sbjct: 698 GDVLDVMIISIDETRGRIGLSLK 720


>gi|260437065|ref|ZP_05790881.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810374|gb|EFF69579.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
          Length = 367

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG+V ++ DFGAFV      D L+H+SQ++ + + K ++V+K G  +  K++D +
Sbjct: 280 VGSVVKGKVARMTDFGAFVELEEGVDALLHVSQIAKQHIEKPAEVLKIGQEIEAKVVDLN 339

Query: 679 -DRGKIKLSMKVV 690
            D  KI LS+K +
Sbjct: 340 ADEHKISLSIKAL 352



 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G V  V DFG F+   G  DGL+H+S++S  R+       K GD V   + D +
Sbjct: 197 VGQVVTGTVKNVTDFGVFIDIGGV-DGLLHVSEISWGRIENPKKKFKPGDEVKAYIKDIN 255

Query: 679 DRGKIKLSMKVVDQN 693
           +  KI LS+K  ++N
Sbjct: 256 N-DKIALSLKFDNEN 269


>gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
 gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
          Length = 497

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|260950407|ref|XP_002619500.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
 gi|238847072|gb|EEQ36536.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
          Length = 1677

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E+ +IY G V KV D+G FV   G A DGL H S+++  +V   + +  EGD V VK+L 
Sbjct: 1212 EIGEIYDGTVKKVADYGVFVKLDGTAVDGLCHRSEIADNQVENAAALFAEGDRVKVKILK 1271

Query: 677  -FDDRGKIKLSMK 688
             F D+ ++ L MK
Sbjct: 1272 IFKDKKQLSLGMK 1284


>gi|304310672|ref|YP_003810270.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1]
 gi|301796405|emb|CBL44613.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1]
          Length = 551

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 8/127 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   V +  AK N      V ++  ++ E E + E    ++++ E  ++
Sbjct: 136 VRDTAHLEGKELEFKVIKLDAKRN-----NVVVSRRAVLEAENSAEREALLSNLQEGMEV 190

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L FD DR 
Sbjct: 191 -KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEIVAVGDEILVKVLKFDRDRN 248

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 249 RVSLGLK 255



 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ K +V  + D+G F       +GLVH+S++  T +    S VV  G+ + V +L
Sbjct: 270 PEGARV-KARVTNLTDYGCFAELQEGVEGLVHVSEMDWTNKNIHPSKVVSIGEEIEVVIL 328

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 329 DIDEERRRISLGVKQCKPN 347


>gi|262274461|ref|ZP_06052272.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
 gi|262221024|gb|EEY72338.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
          Length = 556

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEINVKVLKFDRDRTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352



 Score = 37.4 bits (85), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRG 681
           G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R 
Sbjct: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISW-NVAGEEAVRDFKKGDEISAVVLQVDAERE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K ++++
Sbjct: 428 RISLGIKQMEED 439


>gi|15900746|ref|NP_345350.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TIGR4]
 gi|111657643|ref|ZP_01408376.1| hypothetical protein SpneT_02001175 [Streptococcus pneumoniae
           TIGR4]
 gi|149004073|ref|ZP_01828879.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69]
 gi|168484699|ref|ZP_02709651.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1873-00]
 gi|168575518|ref|ZP_02721454.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016]
 gi|237650398|ref|ZP_04524650.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974]
 gi|237822248|ref|ZP_04598093.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974M2]
 gi|14972334|gb|AAK74990.1| ribosomal protein S1 [Streptococcus pneumoniae TIGR4]
 gi|147757974|gb|EDK64982.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69]
 gi|172042098|gb|EDT50144.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1873-00]
 gi|183578463|gb|EDT98991.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016]
 gi|332202718|gb|EGJ16787.1| hypothetical protein SPAR69_0831 [Streptococcus pneumoniae GA41317]
 gi|332204016|gb|EGJ18083.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
          Length = 400

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAFV   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFVDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|31789463|gb|AAP58577.1| putative 30S ribosomal protein S1 [uncultured Acidobacteria
           bacterium]
          Length = 318

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G++ +  +FGAFV      +GL HIS+LS ERV K  DVV+ G  +  K+L  D + 
Sbjct: 144 VVRGKIARFANFGAFVELDDNLEGLCHISELSDERVEKPEDVVQLGQEMEFKILRIDVES 203

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            KI LS + V ++  +PIV
Sbjct: 204 KKIGLSARSVGKDD-EPIV 221



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEG---DTVWVKLLDFDDR 680
           G+V  + DFGAF+      DGLVH+S +S + R+   S+V+K+G   D V +  +D ++R
Sbjct: 60  GRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAV-ITSIDAENR 118

Query: 681 GKIKLSMKVVDQNT 694
            ++ LS+K ++ N 
Sbjct: 119 -RLSLSIKDLEPNA 131


>gi|299144438|ref|ZP_07037518.1| general stress protein 13 [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518923|gb|EFI42662.1| general stress protein 13 [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 133

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G V  V+ FGAF++      GLVHIS++S   V   SD +K+G  V VK+L  D
Sbjct: 5   VGQIVDGVVSGVLKFGAFINLPEDNSGLVHISEISDSYVENVSDFLKKGQKVKVKVLSLD 64

Query: 679 DRGKIKLSMKVVDQNTGKP 697
           DRGKI LS+K     + KP
Sbjct: 65  DRGKIALSIKQAQVKSSKP 83


>gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
 gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
          Length = 432

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++  R ++ +   L+   GS L   GDT+ I   T+ T+        L G   
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETK----VPRFLKGMGS 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E ++ G  S R +   RL  R++   +   A    ++ + 
Sbjct: 57  GWVHAEYSMLPRATNTRNIREAAK-GKLSGRTMEIQRLIARSLRSCIDLEALGERSITVD 115

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A       L+D+G     PI + VA I++G+++DG   + 
Sbjct: 116 CDVIQADGGTRTASITGAFVALKLAIQTLLDSGELALSPIKENVAAISVGILEDGQAVL- 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D++  ED   ++D  +  T  G
Sbjct: 175 --DLNYLEDSAANVDMNLVMTSGG 196


>gi|317478706|ref|ZP_07937860.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316905136|gb|EFV26936.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 704

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E  ++  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 621 VRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLSQLADRFISDPNEVVSIHQH 679

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           + VK+L  D DR +I+L+MK V+QN
Sbjct: 680 IRVKVLSIDMDRKRIQLTMKGVEQN 704


>gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
          Length = 500

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|296158978|ref|ZP_06841806.1| Tex-like protein-like protein [Burkholderia sp. Ch1-1]
 gi|295890853|gb|EFG70643.1| Tex-like protein-like protein [Burkholderia sp. Ch1-1]
          Length = 782

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRMDDE 729


>gi|116493258|ref|YP_804993.1| transcriptional accessory protein [Pediococcus pentosaceus ATCC
           25745]
 gi|116103408|gb|ABJ68551.1| Transcriptional accessory protein [Pediococcus pentosaceus ATCC
           25745]
          Length = 722

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L    V + SDVV  GD   VWV+ +D  +R 
Sbjct: 654 QGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDV-ERH 712

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 713 RIQLTM 718


>gi|15615909|ref|NP_244213.1| general stress protein 13 [Bacillus halodurans C-125]
 gi|10175970|dbj|BAB07066.1| polyribonucleotide nucleotidyltransferase (general stress protein
           13) [Bacillus halodurans C-125]
          Length = 138

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAFV     + GLVHIS+++   V   +DV+  GD V VK+L  
Sbjct: 5   EVGSIVEGKVTGIKPFGAFVAIDDQKQGLVHISEVAHGFVKDINDVLSVGDEVKVKILSV 64

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           D+  GKI LS++   +   +P
Sbjct: 65  DEESGKISLSIRATQEAPERP 85


>gi|294102013|ref|YP_003553871.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293616993|gb|ADE57147.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 503

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V  +  FGAF++  G  DGLVHIS+LS +R  K  +VVK+G+TV VK++  + + 
Sbjct: 213 ILEGRVSSITSFGAFINL-GPIDGLVHISELSWKRNVKPKEVVKKGETVKVKVIGIEQEN 271

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 272 NRVSLSIK 279



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 38/53 (71%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +VV++ DFGAFV      +GL+HISQLST+RV K  DV+ EG+ V  ++++ +
Sbjct: 387 KVVRLADFGAFVEVEEGVEGLIHISQLSTKRVDKPEDVLSEGEEVLARVIEIN 439



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 32/58 (55%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G V  V DFGAFV      +GL+HI  LS  R+    DV+K+G  V V +LD D   K
Sbjct: 301 GVVTNVTDFGAFVEVGPGIEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAEKK 358


>gi|323526564|ref|YP_004228717.1| Tex-like protein [Burkholderia sp. CCGE1001]
 gi|323383566|gb|ADX55657.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1001]
          Length = 780

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRLDDE 729


>gi|300778889|ref|ZP_07088747.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
 gi|300504399|gb|EFK35539.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
          Length = 596

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A+IE  +   + I    E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV   
Sbjct: 207 ADIEGQK---KEIIAQLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITDLSWSRVNHP 262

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           S+++++G TV V +LDFDD + +I+L MK
Sbjct: 263 SEILEDGQTVKVVILDFDDEKTRIQLGMK 291



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V  ++L  D +  
Sbjct: 312 KGKVVVLADYGAFVEIAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREER 371

Query: 682 KIKLSMKVVDQNTGKPI 698
           KI L +K + ++  + I
Sbjct: 372 KISLGIKQLSKDPWENI 388


>gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 [bacterium Ellin514]
 gi|223894346|gb|EEF60799.1| ribosomal protein S1 [bacterium Ellin514]
          Length = 553

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  GQV K+  FGAFV      DGLVHISQ+S ERV K  +V+K G  V  +++  
Sbjct: 442 KVGDLVTGQVTKLASFGAFVGLQHEIDGLVHISQVSEERVDKIKNVLKVGQEVTARVIKI 501

Query: 678 D--DRGKIKLSMK 688
           D  DR +I LS+K
Sbjct: 502 DKSDR-RIGLSIK 513



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + DFGAF+   G  DGL+HI+ +S  R+A  SD++K G  + V +LD + ++
Sbjct: 187 IRKGTVKNITDFGAFIDLNGI-DGLLHITDMSWGRIAHPSDILKVGQDIDVVVLDINKEK 245

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 246 ERVSLGLK 253



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV ++ +GAFV      +GLVH+++LS T+R+AK +DV+K    +   +L  + +  
Sbjct: 274 KGKVVNLVPYGAFVELEPGVEGLVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQ 333

Query: 682 KIKLSMKVVDQN 693
           KI L ++ ++ N
Sbjct: 334 KISLGVRQLETN 345



 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           KG++  +  +GAF+      DG++H+S +S T ++   S+V+K+GD V   +L+ D
Sbjct: 361 KGKIRNLTSYGAFIELEEGLDGMIHVSDISWTRKINHPSEVLKKGDEVEAVVLEID 416


>gi|91784192|ref|YP_559398.1| S1 RNA-binding domain-containing protein [Burkholderia xenovorans
           LB400]
 gi|91688146|gb|ABE31346.1| S1 RNA binding domain protein [Burkholderia xenovorans LB400]
          Length = 781

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRMDDE 729


>gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2]
 gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2]
          Length = 246

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 41/209 (19%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +  +  +++   GS +   GDT+ +   T+         D L G +R 
Sbjct: 8   RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATI--------EDGLPGWRRA 59

Query: 373 D----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                    Y  LP +TG        +RRE G  R   + I  ++ ++ +    LR + E
Sbjct: 60  SRSGWVTAEYAMLPASTGR------RTRREFGQRRGRSQEIERLIGRSLRTATNLRALGE 113

Query: 429 IT--------ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKD 469
            T        ++DG +  A + G+ +AL DA            +P+   VA ++MGLV D
Sbjct: 114 HTVTIDCDVIQADGGTRTAALTGAWVALHDALAAWVEAARIPRIPLVSQVAAVSMGLV-D 172

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDS 498
           G+   +L D+   ED    +D  +  T S
Sbjct: 173 GN---VLLDLDYAEDSRAEVDMNLVCTQS 198


>gi|322381802|ref|ZP_08055756.1| 30S ribosomal protein S1-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154190|gb|EFX46512.1| 30S ribosomal protein S1-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 411

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 6/87 (6%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E++ SI    EV ++++G V ++  FGAFV   G  DGLVHIS+++   V   S+VVKE
Sbjct: 197 KEILNSI----EVGQVFEGTVQRLTQFGAFVD-IGGLDGLVHISEMAWHHVDHPSEVVKE 251

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+L  D +  K+ LS+K  +Q
Sbjct: 252 GDKVKVKVLKVDPEHDKVSLSIKATEQ 278



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G V ++  FGAFV      +GLVHISQ++   +    +V+KEG  V VK+LD +
Sbjct: 290 IGDIVDGTVKRLASFGAFVEITPGVEGLVHISQIAHRHIGTPQEVLKEGQEVKVKILDIN 349

Query: 679 DRGK-IKLSMK 688
              K I LS+K
Sbjct: 350 AAEKRISLSIK 360



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 604 EAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +A +E   +++ V  + K  I KG++VKV    AFV      DG++ + +LS+ +V    
Sbjct: 15  DAGQEAQEAMSQVATLKKGDIVKGKIVKVEQDQAFVDIGYKYDGIIPVRELSSVQVDTAD 74

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             V+ G  V  K++  DD + K+ LS + VD
Sbjct: 75  KAVEVGQEVEAKVVTIDDNKEKLVLSKRAVD 105


>gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 257

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 25/197 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +S Q G      GS L   G T+ +   ++    +E+    L G+ R 
Sbjct: 10  RADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASV----EEKVPPFLRGSDRG 65

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP +T      ++SR G  + R     RL  R++   +   +    T+ I  
Sbjct: 66  WVTAEYSLLPRSTSTRVPRDISR-GKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDC 124

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A V G  +AL+DA            +P+   VA +++G +       +L
Sbjct: 125 DVLQADGGTRSAAVTGGFVALVDALRHLWRIGKLKSIPLRSYVAAVSVGKISGK----LL 180

Query: 477 SDISGDEDHLGHMDFKV 493
           +D+  DED    +D  V
Sbjct: 181 TDLCYDEDSRAEVDMNV 197


>gi|227891602|ref|ZP_04009407.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741]
 gi|227866749|gb|EEJ74170.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741]
          Length = 154

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + DFGAFV     + GLVHIS++S   V    +V+  GD V VK+L  
Sbjct: 4   EVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLSV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS+K
Sbjct: 64  SDDGKIGLSIK 74


>gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 490

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 211 QVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFD 269

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 270 RERVSLSLKATQED 283



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G  V+VK++D D
Sbjct: 294 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVTVGQEVFVKVIDID 353

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 354 LERRRISLSLKQANE 368


>gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74]
 gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74]
          Length = 504

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|168184863|ref|ZP_02619527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal
           protein S1 homolog [Clostridium botulinum Bf]
 gi|237795216|ref|YP_002862768.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Clostridium botulinum Ba4
           str. 657]
 gi|182672058|gb|EDT84019.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal
           protein S1 homolog [Clostridium botulinum Bf]
 gi|229260583|gb|ACQ51616.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase/ribosomal protein S1 [Clostridium botulinum
           Ba4 str. 657]
          Length = 644

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 587 IDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           I D    KI  S    ++  R E I    +  E + + +G+V +  +FGAF+   G  DG
Sbjct: 451 IKDRYKTKIVGSRRNILKTIRDEHIEETWNSLEKDTVVEGEVKRFTNFGAFIEINGV-DG 509

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           L+H+S++S  RV K  D +K GD + V +LD D +  K+ LS+K + ++  K +
Sbjct: 510 LLHVSEISWGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 563



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 575 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 634

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 635 ALSIKDVEE 643


>gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
 gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
          Length = 239

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+DA           G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQG----VPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  TDSG
Sbjct: 175 DLDYLEDSAAETDLNVVMTDSG 196


>gi|39997697|ref|NP_953648.1| 30S ribosomal protein S1 [Geobacter sulfurreducens PCA]
 gi|39984589|gb|AAR35975.1| ribosomal protein S1 [Geobacter sulfurreducens PCA]
          Length = 574

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++   L E E A     ++ ++ E  +  +G V  + D+GAFV   G  DGL+H++
Sbjct: 177 GNIVLSRRVLLEEERAGVRTETLANLAE-GQTREGVVKNITDYGAFVDIGGV-DGLLHVT 234

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            +S  R+   S+++K GD + VK+L +D ++GKI L +K +
Sbjct: 235 DMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQI 275



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G+V  V DFG F+      +GLVH+S+LS E+VA   D    GD +   +L  DD   K
Sbjct: 468 RGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKK 527

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 528 IALSVKAL 535



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G+VV + D+GAFV      +GLVH+S++S T+R+   SD++  GD V   +L  D    +
Sbjct: 295 GRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRR 354

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 355 ISLGLKQAQAN 365



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +GQ+  + DFG F+      DGLVH+S +S T+R+    +V  +G TV   +L+ D
Sbjct: 381 EGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVD 436


>gi|88798566|ref|ZP_01114150.1| Transcriptional accessory protein [Reinekea sp. MED297]
 gi|88778666|gb|EAR09857.1| Transcriptional accessory protein [Reinekea sp. MED297]
          Length = 775

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + ++ D+   N   +G V  V  FGAFV     +DGLVHIS +S   V   S VVK 
Sbjct: 637 QEGVETLKDL-RPNMTLEGVVTNVTHFGAFVDVGVHQDGLVHISAMSHSFVDDPSSVVKA 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+++ D  R +I LSM++ D
Sbjct: 696 GDIVKVKVMEVDVARKRIALSMRLDD 721


>gi|168212813|ref|ZP_02638438.1| ribosomal protein S1 family [Clostridium perfringens CPE str.
           F4969]
 gi|170715502|gb|EDT27684.1| ribosomal protein S1 family [Clostridium perfringens CPE str.
           F4969]
          Length = 378

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ 
Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336

Query: 678 DDRGKIKLSMKVVD 691
           DD  K K+S+ + D
Sbjct: 337 DDENK-KMSLSIKD 349



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +
Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDIDRER 257

Query: 683 IKLSMKVVDQN 693
           I LS+K V +N
Sbjct: 258 IALSLKDVIKN 268


>gi|309389058|gb|ADO76938.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
           praevalens DSM 2228]
          Length = 721

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G++ K++DFGAF+      +GL+HISQLS   V  T +VV  GD    K+++ D D
Sbjct: 597 EVIEGKITKLVDFGAFMEVEKGIEGLIHISQLSHRHVKTTDEVVSVGDVKEAKIINIDAD 656

Query: 680 RGKIKLSMKVVDQ 692
           + ++ LS+K +++
Sbjct: 657 QERVGLSLKELEE 669



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+  V ++   + E E A +   ++  + E  +  +G V K++DFGAF+   G  +GL+H
Sbjct: 481 DNNNVVLSHKKVLEKERAAKKEETLASLEE-GQTVEGTVTKLVDFGAFIDLGGI-EGLLH 538

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           IS++S  R+   ++V+ EG+ V VK+L  + +  +I L +K
Sbjct: 539 ISEMSWGRIESPAEVLTEGEKVEVKVLGVNKEEERISLGLK 579


>gi|306825121|ref|ZP_07458463.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432557|gb|EFM35531.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 709

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSMKVVDQNT 694
             +R K+ LS+   D++ 
Sbjct: 693 -TEREKVNLSLLAPDESN 709


>gi|298506630|gb|ADI85353.1| ribosomal protein S1 [Geobacter sulfurreducens KN400]
          Length = 586

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++   L E E A     ++ ++ E  +  +G V  + D+GAFV   G  DGL+H++
Sbjct: 189 GNIVLSRRVLLEEERAGVRTETLANLAE-GQTREGVVKNITDYGAFVDIGGV-DGLLHVT 246

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            +S  R+   S+++K GD + VK+L +D ++GKI L +K +
Sbjct: 247 DMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQI 287



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G+V  V DFG F+      +GLVH+S+LS E+VA   D    GD +   +L  DD   K
Sbjct: 480 RGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKK 539

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 540 IALSVKAL 547



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G+VV + D+GAFV      +GLVH+S++S T+R+   SD++  GD V   +L  D    +
Sbjct: 307 GRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRR 366

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 367 ISLGLKQAQAN 377



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +GQ+  + DFG F+      DGLVH+S +S T+R+    +V  +G TV   +L+ D
Sbjct: 393 EGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVD 448


>gi|307729263|ref|YP_003906487.1| Tex-like protein [Burkholderia sp. CCGE1003]
 gi|307583798|gb|ADN57196.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1003]
          Length = 781

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRLDDE 729


>gi|288554672|ref|YP_003426607.1| hypothetical protein BpOF4_08285 [Bacillus pseudofirmus OF4]
 gi|288545832|gb|ADC49715.1| hypothetical protein BpOF4_08285 [Bacillus pseudofirmus OF4]
          Length = 159

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K G+ V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEFLKVGEEVTVKVVNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EKDGKIGLSIR 74


>gi|187924504|ref|YP_001896146.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN]
 gi|187715698|gb|ACD16922.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN]
          Length = 782

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRMDDE 729


>gi|110799693|ref|YP_696828.1| 30S ribosomal protein S1 [Clostridium perfringens ATCC 13124]
 gi|168208852|ref|ZP_02634477.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC
           3626]
 gi|168215777|ref|ZP_02641402.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239]
 gi|110674340|gb|ABG83327.1| ribosomal protein S1 family [Clostridium perfringens ATCC 13124]
 gi|170713092|gb|EDT25274.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC
           3626]
 gi|182382017|gb|EDT79496.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239]
          Length = 378

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ 
Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336

Query: 678 DDRGKIKLSMKVVD 691
           DD  K K+S+ + D
Sbjct: 337 DDENK-KMSLSIKD 349



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +
Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257

Query: 683 IKLSMKVVDQN 693
           I LS+K V +N
Sbjct: 258 IALSLKDVIKN 268


>gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603]
          Length = 488

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E  +  +RS      +  ++  G V  +++FGAFV   G  DGLVH+S+LS + 
Sbjct: 183 SRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKH 241

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 242 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQED 279



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  +VK++D D
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVNVGDDAFVKVIDID 349

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 350 LERRRISLSLK 360


>gi|251794092|ref|YP_003008823.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
 gi|247541718|gb|ACS98736.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 162

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V    D +K  D V VK+++ 
Sbjct: 4   EVGAKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVKDHLKIDDVVKVKVINV 63

Query: 678 DDRGKIKLSMK-VVDQNTGK 696
           D  GKI LS+K  VD+  G+
Sbjct: 64  DKDGKIGLSIKQAVDRPEGQ 83


>gi|166712336|ref|ZP_02243543.1| transcription-related protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 786

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I LS ++ D
Sbjct: 717 KRIALSCRLSD 727


>gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672]
          Length = 238

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 23/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +RDI      ++   GS L   G+T+ I   T+     E     L GT  
Sbjct: 1   MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATI----SEGVPPFLKGTGT 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LPC+T       S+ G  + R     RL  R++   +  +     T+ I  
Sbjct: 57  GWLTSEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           ++ ++DG +  A++ G  LAL  A          G PI   VA +++G+V +G+   I+ 
Sbjct: 117 DVIQADGGTRTASITGGFLALYIACQKLSEDLKIGNPIKSFVAAVSLGIV-NGE---IML 172

Query: 478 DISGDEDHLGHMDFK-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D   +A   S I  +Q   + G   ++++   +     G   +++   
Sbjct: 173 DLNYEEDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQK 232

Query: 537 KVLS 540
           +VL+
Sbjct: 233 RVLN 236


>gi|281413894|ref|ZP_06245636.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
          Length = 413

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ 
Sbjct: 134 EKGQVRNGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 192

Query: 678 D-DRGKIKLSMKVVDQN 693
           D DR ++ LS+K   ++
Sbjct: 193 DMDRERVSLSLKATQED 209



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L++  +     VV   D ++VK++D D
Sbjct: 220 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDID 279

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 280 LERRRISLSLKQANE 294


>gi|226327578|ref|ZP_03803096.1| hypothetical protein PROPEN_01449 [Proteus penneri ATCC 35198]
 gi|225204104|gb|EEG86458.1| hypothetical protein PROPEN_01449 [Proteus penneri ATCC 35198]
          Length = 779

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS L+   +     VVK GD V VK+L+ D  R
Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLADRFIEDPHTVVKTGDIVKVKVLEVDLAR 711

Query: 681 GKIKLSMKV 689
            +I L+M++
Sbjct: 712 KRIALTMRL 720


>gi|46580651|ref|YP_011459.1| S1 RNA-binding domain-containing protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450070|gb|AAS96719.1| S1 RNA binding domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234383|gb|ADP87237.1| Tex-like protein protein-like protein [Desulfovibrio vulgaris RCH1]
          Length = 723

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     RDGLVH+SQL+   V   ++VV  G  V V++LD D  R +I
Sbjct: 653 GIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERI 712

Query: 684 KLSMKVVDQN 693
            L++K V Q 
Sbjct: 713 NLTLKGVPQQ 722


>gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78]
 gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG]
 gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF]
 gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78]
          Length = 504

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|229829150|ref|ZP_04455219.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM
           14600]
 gi|229792313|gb|EEP28427.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM
           14600]
          Length = 368

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI-----RSITDVPEVNKIYKGQVVKV 630
           G VE      N+DD   V I   +  +I  +R+          ++   V  +  G+V ++
Sbjct: 225 GRVENPRKVFNVDDKVRVFIKEINGTKIALSRKFADENPWNGASEKFAVGTVVAGKVARM 284

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKV 689
            DFGAF+      D L+H+SQ+S + V K SD++  G  V   +++F +   KI LSMK 
Sbjct: 285 TDFGAFIELAPGIDALLHVSQISKDHVDKPSDILSVGQEVTAVIVEFREADHKISLSMKA 344

Query: 690 VDQNTGK 696
           +D +  +
Sbjct: 345 LDDSNSR 351



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +  +  +E   E+ + + +  +V  I +G +  + DFGAFV   G  DGL+HIS++S 
Sbjct: 166 IGNRKMILVERKSEIQKDLLEKLKVGDIIEGTIKNITDFGAFVDLGGI-DGLLHISEMSW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            RV     V    D V V + + +   KI LS K  D+N
Sbjct: 225 GRVENPRKVFNVDDKVRVFIKEINGT-KIALSRKFADEN 262


>gi|254424866|ref|ZP_05038584.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
 gi|196192355|gb|EDX87319.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
          Length = 304

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ +G +  +  FGAFV F GA  GL+HI Q+S   ++   DV K GD +   +L+ D+ 
Sbjct: 201 ELIEGTIASLKPFGAFVDFGGA-SGLLHIKQISKSYISALGDVFKVGDPIKAVVLNIDEQ 259

Query: 680 RGKIKLSMKVVDQNTGK 696
           RG+I LS +V+++  G+
Sbjct: 260 RGRIALSTQVLEKYPGE 276


>gi|110802114|ref|YP_699426.1| 30S ribosomal protein S1 [Clostridium perfringens SM101]
 gi|110682615|gb|ABG85985.1| ribosomal protein, S1 family [Clostridium perfringens SM101]
          Length = 378

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ 
Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336

Query: 678 DDRGKIKLSMKVVD 691
           DD  K K+S+ + D
Sbjct: 337 DDENK-KMSLSIKD 349



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +
Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257

Query: 683 IKLSMKVVDQN 693
           I LS+K V +N
Sbjct: 258 IALSLKDVIKN 268


>gi|167038148|ref|YP_001665726.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116557|ref|YP_004186716.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856982|gb|ABY95390.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929648|gb|ADV80333.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 712

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVHIS++S   +    DVV  GD V V++L  D +R +I
Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|297198957|ref|ZP_06916354.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
 gi|197711117|gb|EDY55151.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
          Length = 503

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202]
 gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202]
          Length = 254

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +SV+  I  KV  T       R+DGR  + +RD+  + G L +  GS L   G T  +  
Sbjct: 1   MSVWSTILGKVSETS------RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCN 54

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARR 407
            ++     E       G+        Y  LP AT    G  SR G    R     RL  R
Sbjct: 55  ASV----TEGVPRWRKGSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGR 110

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKPVA 460
           ++  V+   A    T+ +  ++ ++DG +  A++ G+ +AL+DA       G  +S+P+ 
Sbjct: 111 SLRAVVDDKALGENTIILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPII 170

Query: 461 G----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G    I++G+V    D I + D++  ED     D  V  + +G
Sbjct: 171 GSVQAISVGVV----DGIPMLDLAYKEDSRADTDMNVVMSGNG 209


>gi|89892944|ref|YP_516431.1| hypothetical protein DSY0198 [Desulfitobacterium hafniense Y51]
 gi|219666211|ref|YP_002456646.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
 gi|89332392|dbj|BAE81987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536471|gb|ACL18210.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 128

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  + +FGAFV       GLVHIS+++   V    D +KE D V VK++  D
Sbjct: 5   VGTIVEGVVTGITNFGAFVELPEKVTGLVHISEVADAYVKDVRDYLKEQDRVKVKVIHVD 64

Query: 679 DRGKIKLSMK 688
           ++GKI LS+K
Sbjct: 65  EKGKIGLSIK 74


>gi|170694794|ref|ZP_02885945.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
 gi|170140425|gb|EDT08602.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
          Length = 783

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+L+ D  R +I L+M++ D+
Sbjct: 703 GQIVKVKVLEVDVKRQRIALTMRLDDE 729


>gi|168205615|ref|ZP_02631620.1| ribosomal protein S1 family [Clostridium perfringens E str.
           JGS1987]
 gi|170662936|gb|EDT15619.1| ribosomal protein S1 family [Clostridium perfringens E str.
           JGS1987]
          Length = 378

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ 
Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336

Query: 678 DDRGKIKLSMKVVD 691
           DD  K K+S+ + D
Sbjct: 337 DDENK-KMSLSIKD 349



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +
Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257

Query: 683 IKLSMKVVDQN 693
           I LS+K V +N
Sbjct: 258 IALSLKDVIKN 268


>gi|167039140|ref|YP_001662125.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|300913270|ref|ZP_07130587.1| Tex-like protein [Thermoanaerobacter sp. X561]
 gi|307723716|ref|YP_003903467.1| Tex-like protein [Thermoanaerobacter sp. X513]
 gi|166853380|gb|ABY91789.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
 gi|300889955|gb|EFK85100.1| Tex-like protein [Thermoanaerobacter sp. X561]
 gi|307580777|gb|ADN54176.1| Tex-like protein protein-like protein [Thermoanaerobacter sp. X513]
          Length = 712

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVHIS++S   +    DVV  GD V V++L  D +R +I
Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member
           (exos-4.1) [Caenorhabditis elegans]
 gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
           Full=Ribosomal RNA-processing protein 41
 gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 240

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R+I+ ++GL +   GS     G+T+ +  V  G  E +    S     + 
Sbjct: 10  RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYEGKS---SKRIEDKC 65

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITE 431
             +  Y+    +  E        R+     RL  +A   V+  T  FP + L I  E+ +
Sbjct: 66  AIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVI-LTEAFPRSQLDIFCEVIQ 124

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            DGS+  A V  +SLAL DAG+P+ K +A  A   V DG   + L+
Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-KGIASAATCGVVDGKPIVDLT 169


>gi|182623946|ref|ZP_02951734.1| ribosomal protein S1 family [Clostridium perfringens D str.
           JGS1721]
 gi|177910839|gb|EDT73193.1| ribosomal protein S1 family [Clostridium perfringens D str.
           JGS1721]
          Length = 378

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ 
Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336

Query: 678 DDRGKIKLSMKVVD 691
           DD  K K+S+ + D
Sbjct: 337 DDENK-KMSLSIKD 349



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +
Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257

Query: 683 IKLSMKVVDQN 693
           I LS+K V +N
Sbjct: 258 IALSLKDVIKN 268


>gi|182419861|ref|ZP_02951101.1| protein tex [Clostridium butyricum 5521]
 gi|237666425|ref|ZP_04526410.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376409|gb|EDT73991.1| protein tex [Clostridium butyricum 5521]
 gi|237657624|gb|EEP55179.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 723

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D+ R +I
Sbjct: 653 GTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVKVSILEVDEKRKRI 712

Query: 684 KLSMKVVDQN 693
            L+MK + ++
Sbjct: 713 SLTMKDIKES 722


>gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
 gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
          Length = 400

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ GDT+ V +L  D
Sbjct: 255 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 313

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 314 RERGRVSLSTKKLEPTPG 331


>gi|163845717|ref|YP_001633761.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222523422|ref|YP_002567892.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667006|gb|ABY33372.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447301|gb|ACM51567.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 520

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G+V  +  +G FV     RDGLVHIS++S  R+   S+VV+ GDT  VWVK ++ + R 
Sbjct: 108 EGKVTSIALYGVFVDIGVGRDGLVHISEMSDRRIETPSEVVQIGDTVKVWVKSIEPEAR- 166

Query: 682 KIKLSMK 688
           +I L+M+
Sbjct: 167 RISLTMR 173



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G +     FGAF      +DGL+H+S+L+  RV K  D VK G+    K+L+ D
Sbjct: 209 VGDVVEGVITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGERYQFKILEID 268

Query: 679 -DRGKIKLSMK 688
            +  +I LS++
Sbjct: 269 GEAARISLSLR 279



 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  +  FGAFV     RDGLVHIS L+  RV K  DVVK GD V VK+L  
Sbjct: 291 ETGQILEGTVSGIAPFGAFVDIGVGRDGLVHISALAPHRVEKVEDVVKVGDKVKVKVLGV 350

Query: 678 DDRGK-IKLSMKVVDQN 693
           D + K I L+M++ ++ 
Sbjct: 351 DQQSKRISLTMRLEEEQ 367


>gi|15612640|ref|NP_240943.1| hypothetical protein BH0077 [Bacillus halodurans C-125]
 gi|10172689|dbj|BAB03796.1| BH0077 [Bacillus halodurans C-125]
          Length = 137

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   ++++  G  V VK+L+ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPGGSTGLVHISEVADHYVKDINELLTVGQEVQVKVLNV 63

Query: 678 DDRGKIKLSM-KVVDQ 692
           +  GKI LS+ K +DQ
Sbjct: 64  ESDGKIGLSIRKALDQ 79


>gi|266622707|ref|ZP_06115642.1| protein YhgF [Clostridium hathewayi DSM 13479]
 gi|288865544|gb|EFC97842.1| protein YhgF [Clostridium hathewayi DSM 13479]
          Length = 713

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHISQ+S + +    + V  GD V VK++  D  +
Sbjct: 645 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSEKFIKHPLEAVSVGDIVEVKVISVDVAK 704

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 705 KRIALTMKL 713


>gi|269102376|ref|ZP_06155073.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162274|gb|EEZ40770.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 556

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD DR ++ L +K
Sbjct: 239 DEINVKVLKFDRDRTRVSLGLK 260



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGTKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRG 681
           G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R 
Sbjct: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISW-NVAGEEAVRDFKKGDEISAVVLAVDAERE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K ++++
Sbjct: 428 RISLGIKQIEED 439


>gi|239917616|ref|YP_002957174.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
 gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
          Length = 485

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ 
Sbjct: 206 EKGQVRNGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 264

Query: 678 D-DRGKIKLSMKVVDQN 693
           D DR ++ LS+K   ++
Sbjct: 265 DMDRERVSLSLKATQED 281



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L++  +     VV   D ++VK++D D
Sbjct: 292 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDID 351

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 352 LERRRISLSLKQANE 366


>gi|120602043|ref|YP_966443.1| RNA-binding S1 domain-containing protein [Desulfovibrio vulgaris
           DP4]
 gi|120562272|gb|ABM28016.1| RNA binding S1 domain protein [Desulfovibrio vulgaris DP4]
          Length = 723

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     RDGLVH+SQL+   V   ++VV  G  V V++LD D  R +I
Sbjct: 653 GIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERI 712

Query: 684 KLSMKVVDQN 693
            L++K V Q 
Sbjct: 713 NLTLKGVPQQ 722


>gi|113461119|ref|YP_719187.1| 30S ribosomal protein S1 [Haemophilus somnus 129PT]
 gi|112823162|gb|ABI25251.1| SSU ribosomal protein S1P [Haemophilus somnus 129PT]
          Length = 547

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E    + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREEILANLAEGSEV-KGTVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV    ++V  GD + VK+L FD D+ ++ L +K + Q+
Sbjct: 223 MAWKRVKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQD 265



 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 578 VEQTGAKVNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           V+  G  V++ D+ TVK+          SL   +  ++   +I +   VN    G+V  +
Sbjct: 228 VKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNL 287

Query: 631 MDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K
Sbjct: 288 TDYGCFVEILEGVEGLVHVSEMDWTNKNIHPSKVVHLGDVVEVMVLEIDEERRRISLGLK 347

Query: 689 VVDQN 693
               N
Sbjct: 348 QCKPN 352


>gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073]
 gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073]
          Length = 250

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 35/209 (16%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR    +R ++ +   L+   GS+L   GDT+ I   T+    +E+    L  T +
Sbjct: 2   LRANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATV----EEKVPPFLKNTGK 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA----------RRAIHPVLPQTAQFPY 421
                 Y+ LP +T E       + RE+  GRL            R++  V+  +     
Sbjct: 58  GWITAEYSLLPRSTKE------RTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGER 111

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
           T+ +  ++ ++DG +  A + GS +AL +A            +P+   +A +++GLV   
Sbjct: 112 TIWLDCDVLQADGGTRTAAITGSFVALAEALAGLVAAGGVPAMPLKDFLAAVSVGLV--- 168

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           DD +IL D+   ED    +D  V  T SG
Sbjct: 169 DDELIL-DLDFQEDSHAGVDMNVVMTGSG 196


>gi|52784382|ref|YP_090211.1| YdcI [Bacillus licheniformis ATCC 14580]
 gi|163119249|ref|YP_077801.2| RNA-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52346884|gb|AAU39518.1| YdcI [Bacillus licheniformis ATCC 14580]
 gi|145902755|gb|AAU22163.2| putative RNA binding protein containing S1 RNA binding domain,YdcI
           [Bacillus licheniformis ATCC 14580]
          Length = 720

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD  TVWV+ +D   +G
Sbjct: 652 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDA-AKG 710

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 711 RVSLSM 716


>gi|222099846|ref|YP_002534414.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572236|gb|ACM23048.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
          Length = 120

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  KG+V K++ +GAFV   G   G +HIS++S + V +  D +KEG  +  K++  
Sbjct: 2   KVGEFVKGKVSKIVRYGAFVDIEGGERGFIHISKISKDYVKRIEDYLKEGQEISAKVIGK 61

Query: 678 DDRGKIKLSMKVVDQNT 694
              G  +LS+K V +NT
Sbjct: 62  ARNGGWELSLKDVSENT 78


>gi|196250541|ref|ZP_03149231.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|196209890|gb|EDY04659.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 239

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  GD   VWV+ +D   +G
Sbjct: 170 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDV-AKG 228

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 229 RISLSM 234


>gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262]
 gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262]
          Length = 248

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|170717701|ref|YP_001784774.1| 30S ribosomal protein S1 [Haemophilus somnus 2336]
 gi|168825830|gb|ACA31201.1| ribosomal protein S1 [Haemophilus somnus 2336]
          Length = 547

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E    + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREEILANLAEGSEV-KGTVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++ +RV    ++V  GD + VK+L FD D+ ++ L +K + Q+
Sbjct: 223 MAWKRVKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQD 265



 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 578 VEQTGAKVNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           V+  G  V++ D+ TVK+          SL   +  ++   +I +   VN    G+V  +
Sbjct: 228 VKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQDPWVAIAENHPVNSKLTGKVTNL 287

Query: 631 MDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K
Sbjct: 288 TDYGCFVEILEGVEGLVHVSEMDWTNKNIHPSKVVHLGDVVEVMVLEIDEERRRISLGLK 347

Query: 689 VVDQN 693
               N
Sbjct: 348 QCKPN 352


>gi|329297356|ref|ZP_08254692.1| putative transcriptional accessory protein [Plautia stali symbiont]
          Length = 776

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+++ D  R
Sbjct: 652 VLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVDDPHQVVKAGNIVKVKVMEVDLQR 711

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ +Q
Sbjct: 712 KRIALTMRLDEQ 723


>gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120]
 gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120]
          Length = 248

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D   P +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEETPFTKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|169344163|ref|ZP_02865145.1| ribosomal protein S1 family [Clostridium perfringens C str.
           JGS1495]
 gi|169297621|gb|EDS79721.1| ribosomal protein S1 family [Clostridium perfringens C str.
           JGS1495]
          Length = 378

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ 
Sbjct: 277 KVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336

Query: 678 DDRGKIKLSMKVVD 691
           DD  K K+S+ + D
Sbjct: 337 DDENK-KMSLSIKD 349



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +
Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257

Query: 683 IKLSMKVVDQN 693
           I LS+K V +N
Sbjct: 258 IALSLKDVIKN 268


>gi|157149853|ref|YP_001450520.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074647|gb|ABV09330.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 401

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ +   
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNPAN 340

Query: 682 -KIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
           carboxydivorans Nor1]
 gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
           carboxydivorans Nor1]
          Length = 655

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G+V K+  FGAFV      +GLVH+S+L+  RVA   +VV+ G TV VK+L  D   K I
Sbjct: 553 GKVTKLAKFGAFVEVKPGVEGLVHLSELADRRVASAQEVVEVGQTVTVKILGIDKENKRI 612

Query: 684 KLSMKVVDQN 693
            LS+    Q+
Sbjct: 613 SLSIAQAQQD 622



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +I  G V ++ DFG FV   G  DGL+HIS LS  RV   ++VV  GD V V +   D 
Sbjct: 463 GQIVTGTVSRIADFGVFVDLGGV-DGLIHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDP 521

Query: 680 RGK-IKLSMKVVDQN 693
           + K I LS+K V ++
Sbjct: 522 KAKRISLSLKRVQRD 536


>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
          Length = 252

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 9/184 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I A+VG+  +  GS+   +G+T+ I+    G  E  +    L    R
Sbjct: 14  LRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTK-ILATVYGPHEVSRKNKPLH--DR 70

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                 Y     AT E  +     +R +      R A    +  T  +P + + I  ++ 
Sbjct: 71  AIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAV-MTQLYPRSQIDIFLQVL 129

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           +SDG +    +  ++LALMDAG+ +   V   ++G + D      L DI+  ED  G  D
Sbjct: 130 QSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTP----LLDINYIEDSAGGPD 185

Query: 491 FKVA 494
             VA
Sbjct: 186 LTVA 189


>gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378]
 gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023]
          Length = 248

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +  
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFPVKDFLAATSVGVLEEGGTVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T SG
Sbjct: 175 -DLNYVEDSAAQVDMNIIMTGSG 196


>gi|282862064|ref|ZP_06271127.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
 gi|282563089|gb|EFB68628.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
          Length = 504

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|182419749|ref|ZP_02950989.1| putative 30S ribosomal protein [Clostridium butyricum 5521]
 gi|237666935|ref|ZP_04526920.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376297|gb|EDT73879.1| putative 30S ribosomal protein [Clostridium butyricum 5521]
 gi|237658134|gb|EEP55689.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 383

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 618 EVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           E+N+  + +G+VV++  FGAFV      +GLVHI++++ E +AK SDV++    V VK+L
Sbjct: 278 EINEGDVIEGKVVRLTSFGAFVELFDGVEGLVHITEITDENIAKPSDVLQLNQKVKVKVL 337

Query: 676 DFDDRGKIKLSMKVVD 691
             D   K K+S+ + D
Sbjct: 338 SIDRESK-KMSLSIKD 352



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V K++ FGAFV   G  +GL+H+S LS ERV K  ++VKEGD V V  +   D+ K +
Sbjct: 202 GVVKKLVKFGAFVDIGGV-EGLIHLSDLSWERVNKPEEIVKEGDKVEV-FIGSVDKEKER 259

Query: 685 LSM 687
           LS+
Sbjct: 260 LSL 262


>gi|326576450|gb|EGE26358.1| RNA binding protein S1 [Moraxella catarrhalis CO72]
          Length = 788

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V    +G V  V  FG FV     +DGLVHIS+LS   V   +DVVK 
Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKP 705

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
            D V V+++  D+ RG+I  SMK
Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728


>gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
 gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
          Length = 485

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ 
Sbjct: 206 EKGQVRNGTVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 264

Query: 678 D-DRGKIKLSMKVVDQN 693
           D DR ++ LS+K   ++
Sbjct: 265 DMDRERVSLSLKATQED 281



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L++  +     VV   D ++VK++D D
Sbjct: 292 LGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDID 351

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 352 LERRRISLSLKQANE 366


>gi|167525162|ref|XP_001746916.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774696|gb|EDQ88323.1| predicted protein [Monosiga brevicollis MX1]
          Length = 375

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +P++ ++Y G V  V  FG FV   G   +GL+H+SQLS  RV     V++ G  V+VK+
Sbjct: 54  LPKLYRVYLGVVKSVKPFGGFVELDGFTHEGLLHVSQLSKFRVDDVESVLQVGQQVFVKV 113

Query: 675 LDFDD--RGKIKLSMKVVDQNTG 695
           ++  +    +I LS+K VDQ  G
Sbjct: 114 IEVGEPPEHRIALSIKTVDQRNG 136


>gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory protein [Janthinobacterium sp.
           Marseille]
 gi|151281145|gb|ABR89555.1| Tex transcriptional accessory protein [Janthinobacterium sp.
           Marseille]
          Length = 782

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  V  FGAFV     +DGLVHIS LS   V     VVK G  V VK+L+ D+ R
Sbjct: 665 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEVDEKR 724

Query: 681 GKIKLSMKVVD 691
            +I L+M++ D
Sbjct: 725 KRIALTMRLSD 735


>gi|114762771|ref|ZP_01442205.1| S1 RNA binding domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114544681|gb|EAU47687.1| S1 RNA binding domain protein [Roseovarius sp. HTCC2601]
          Length = 771

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ +     +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 637 EGVEQITDL-KPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 695

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++ + D  R +I LSM+      GKP
Sbjct: 696 DVVRVRVTEVDVPRKRIGLSMR--KDGGGKP 724


>gi|94676844|ref|YP_588705.1| 30S ribosomal protein S1 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219994|gb|ABF14153.1| ribosomal protein S1 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 558

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGLVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVTIGDEIIVKILKFDRERTR 254

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 255 VSLGLKQLSQD 265



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV   D V + +L
Sbjct: 275 PE-NSRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVNVNDIVEIMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCQAN 352



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHIS----QLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           +G++  + DFG F+   G  DGLVH+S     LS E  A+     K+G+ +   +L  D 
Sbjct: 368 EGKIKSITDFGIFIGLEGGIDGLVHLSDIYWNLSGEEAARE---YKKGEEIAAVVLQVDA 424

Query: 679 DRGKIKLSMKVVDQN 693
           +R +I L +K +DQ+
Sbjct: 425 ERERISLGIKQLDQD 439


>gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
 gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
          Length = 453

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 106/232 (45%), Gaps = 26/232 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L  +++
Sbjct: 2   IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATI----EEKVPFFLKDSEK 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R  +   +  G      RL  R++  V+        ++ I  
Sbjct: 58  GWVTAEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDC 117

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L+  G+    PI + +A +++G++ + +    +
Sbjct: 118 DVIQADGGTRTASITGAFVALKLAVEKLLQQGLLTENPIKEYLAAVSVGMLSNDN---CI 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQA 524
           +D++ +ED    +D  +  T++G    I     +    G   N M+   +QA
Sbjct: 175 TDLNYEEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQA 226


>gi|301063982|ref|ZP_07204447.1| ribosomal protein S1 [delta proteobacterium NaphS2]
 gi|300441893|gb|EFK06193.1| ribosomal protein S1 [delta proteobacterium NaphS2]
          Length = 599

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +EA R  ++  T  + E + + KG V  + D+G F+   G  DGLVHI+ +S
Sbjct: 175 IVLSRRAILEAERAALKEETLKIIEEDAVLKGVVKNITDYGLFIDLGGL-DGLVHITDMS 233

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             RV   S++ + GD + VK+L+FD +R ++ L +K
Sbjct: 234 WGRVGHPSEMHRVGDEIQVKVLNFDRERERVSLGIK 269



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GL+H+S++S T ++   S ++  GDTV   +L+ D  R +
Sbjct: 291 GRVVSLTDYGAFVEVEQGVEGLIHVSEMSWTRKIRHPSQILNVGDTVDAIVLNMDVQRKR 350

Query: 683 IKLSMKVVDQN 693
           I L MK V+ N
Sbjct: 351 ISLGMKQVEPN 361



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +G++  + DFG F+      DGLVHIS +S T+R+   S++ K+G  V   +L+ D
Sbjct: 377 EGKIKNITDFGTFIGIDEGIDGLVHISDMSWTKRIKHPSELYKKGQEVRAVVLNID 432



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G V  + DFG F+      +GLVH+S++S ++        +  D +  K+++   R  KI
Sbjct: 465 GTVTNITDFGLFIELEEGIEGLVHVSEISGDKRGNPLSRFQIDDVIQTKVINVSRREKKI 524

Query: 684 KLSMKVVDQNTGKPI 698
            LS++ ++Q + K I
Sbjct: 525 GLSIRKLEQTSEKEI 539


>gi|119471392|ref|ZP_01613864.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Alteromonadales
           bacterium TW-7]
 gi|119445668|gb|EAW26952.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Alteromonadales
           bacterium TW-7]
          Length = 774

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ D  R
Sbjct: 651 ILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKVKVVEVDASR 710

Query: 681 GKIKLSMKVVDQ--NTGKP 697
            +I  +M++ D+   + KP
Sbjct: 711 KRISFTMRLNDEIDTSNKP 729


>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
          Length = 246

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 15/188 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+ +R+DGR S+ +R +  ++G    +   S ++      ++    G RE  +   S
Sbjct: 3   LLSDQGLRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPRE-PRGGSS 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH-----PVLPQTAQFP 420
              + + + +++  F   A     R     +R+ G  R    A H         QT  +P
Sbjct: 62  GDNSNKEEAILNVQFSSAAFSTAER----KQRQRGDKRSLEMAAHLKQTFAACIQTELYP 117

Query: 421 YT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + + I  E+ ++DG    A+V  ++LAL+ AG+P+   V   +  L+K+      L DI
Sbjct: 118 RSQIDIFVEVLQTDGGHYCASVNAATLALIHAGIPLRDYVCACSASLIKE----TPLLDI 173

Query: 480 SGDEDHLG 487
           S  E +LG
Sbjct: 174 SMLESNLG 181


>gi|225575700|ref|ZP_03784310.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037080|gb|EEG47326.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM
           10507]
          Length = 301

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 603 IEAAREMIRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +ARE+++   D          EV  + +G V  +  +GAF+       GLVHISQ+S 
Sbjct: 171 ILSAREILKEKADEERKAKISNVEVGLVTEGIVESLQPYGAFIDLGNGLSGLVHISQISE 230

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +R+   S V+  GD V VK++   D GK+ LSMK +     K I
Sbjct: 231 KRIKSCSQVLAVGDKVKVKVIAIKD-GKLSLSMKALADVAAKEI 273


>gi|149391139|gb|ABR25587.1| 30S ribosomal protein S1 [Oryza sativa Indica Group]
          Length = 217

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ GDT+ V +L  D
Sbjct: 69  IGSVVLGTVESLKPYGAFIDIGGI-NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 127

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 128 RERGRVSLSTKKLEPTPG 145


>gi|156081953|ref|XP_001608469.1| RNA helicase [Plasmodium vivax SaI-1]
 gi|148801040|gb|EDL42445.1| RNA helicase, putative [Plasmodium vivax]
          Length = 1218

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF----CGARDGLVHISQL--STERVAKTSDVVKEGDTVWV 672
           VN I+ G V KVMDFG FV F     G ++GLVH + +  + +RVA   +  + G  V V
Sbjct: 239 VNNIFSGTVSKVMDFGIFVSFRSEPGGYKEGLVHCTDILPNRKRVANMREQFQRGMKVKV 298

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K+       KI L+M  VDQ TGK +V
Sbjct: 299 KVKALFGE-KISLNMAEVDQKTGKNLV 324


>gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680]
 gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680]
          Length = 501

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|326577921|gb|EGE27785.1| RNA binding protein S1 [Moraxella catarrhalis O35E]
          Length = 788

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V    +G V  V  FG FV     +DGLVHIS+LS   V   +DVVK 
Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKP 705

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
            D V V+++  D+ RG+I  SMK
Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728


>gi|326561800|gb|EGE12135.1| RNA binding protein S1 [Moraxella catarrhalis 7169]
 gi|326564763|gb|EGE14976.1| RNA binding protein S1 [Moraxella catarrhalis 12P80B1]
 gi|326568974|gb|EGE19043.1| RNA binding protein S1 [Moraxella catarrhalis BC1]
          Length = 788

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V    +G V  V  FG FV     +DGLVHIS+LS   V   +DVVK 
Sbjct: 647 RDDVNEIKDL-KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKP 705

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
            D V V+++  D+ RG+I  SMK
Sbjct: 706 QDIVTVRVISVDEVRGRIGFSMK 728


>gi|302802588|ref|XP_002983048.1| hypothetical protein SELMODRAFT_6137 [Selaginella moellendorffii]
 gi|300149201|gb|EFJ15857.1| hypothetical protein SELMODRAFT_6137 [Selaginella moellendorffii]
          Length = 163

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 16/100 (16%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD----------- 662
           ++PE+  I +G+V  V  FG FV   G R  GLVH+SQ+S   V +  D           
Sbjct: 8   ELPELYSICRGRVHSVKPFGLFVRLEGYRAHGLVHLSQVSNHEVTQREDSDEVKMQALAA 67

Query: 663 VVKEGDTVWVKLL----DFDDRGKIKLSMKVVDQNTGKPI 698
           +  +G+ +WVK++    + D   KI  SMK+V Q  G+ +
Sbjct: 68  IAGQGEEIWVKIIAVRREEDGSVKIGCSMKLVGQTDGRDL 107


>gi|222528668|ref|YP_002572550.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455515|gb|ACM59777.1| RNA binding S1 domain protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 120

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++  + G
Sbjct: 8   ILEGIVKGITQFGAFVELPSGKVGLVHISEVADEYVEDIKKYLKENQTVKVKVINVKEDG 67

Query: 682 KIKLSMKVVDQNT 694
           KI LS+K V++ T
Sbjct: 68  KISLSIKRVNETT 80


>gi|319648686|ref|ZP_08002897.1| YdcI protein [Bacillus sp. BT1B_CT2]
 gi|317389105|gb|EFV69921.1| YdcI protein [Bacillus sp. BT1B_CT2]
          Length = 720

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD  TVWV+ +D   +G
Sbjct: 652 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDA-AKG 710

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 711 RVSLSM 716


>gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays]
 gi|194703708|gb|ACF85938.1| unknown [Zea mays]
 gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays]
 gi|223948553|gb|ACN28360.1| unknown [Zea mays]
          Length = 401

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ GDT+ V +L  D
Sbjct: 255 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 313

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 314 RERGRVSLSTKKLEPTPG 331


>gi|134096173|ref|YP_001101248.1| putative polyribonucleotide nucleotidyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133740076|emb|CAL63127.1| putative transcription accessory protein TEX [Herminiimonas
           arsenicoxydans]
          Length = 780

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  V  FGAFV     +DGLVHIS LS   V     VVK G  V VK+L+ D+ R
Sbjct: 665 ILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEVDEKR 724

Query: 681 GKIKLSMKVVD 691
            +I L+M++ D
Sbjct: 725 KRIALTMRLSD 735


>gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa
          Length = 239

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+DA           G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQXVAAVSVGIYQG----VPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  TD+G
Sbjct: 175 DLDYLEDSAAETDLNVVXTDAG 196


>gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 248

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   + L
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEQVPFTKFPVKDFLAATSVGVLEEGGTVLDL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           + I   ED    +D  +  T SG
Sbjct: 177 NYI---EDSAAQVDMNIIMTGSG 196


>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
 gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
          Length = 249

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 38/198 (19%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E       
Sbjct: 6   LLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVV-YGPHE------- 57

Query: 366 LSGTQRNDFMMH--------YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + G++    M+H        Y+    +TGE        RR  G  + +   +H  L QT 
Sbjct: 58  IRGSRSK--MLHDRCVINCQYSMATFSTGE------RKRRPHGDRKSSEMTLH--LKQTF 107

Query: 418 Q-------FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           +       +P + + I  +I ++DG +    V  ++LA++DAG+P+   V   + G ++D
Sbjct: 108 EAAILTQLYPRSQIDIYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCACSAGFIED 167

Query: 470 GDDFIILSDISGDEDHLG 487
                 L+D+S  E+  G
Sbjct: 168 ----TPLADLSYVEEATG 181


>gi|257898849|ref|ZP_05678502.1| ribosomal protein S1 [Enterococcus faecium Com15]
 gi|257836761|gb|EEV61835.1| ribosomal protein S1 [Enterococcus faecium Com15]
          Length = 417

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SDV+   D V VK+L  + ++
Sbjct: 214 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 272

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 273 ERVSLSIK 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 296 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 356 PEEHRIALSIKALEE 370


>gi|238916861|ref|YP_002930378.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750]
 gi|238872221|gb|ACR71931.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750]
          Length = 355

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG V ++ DFGAFV      D L+H+SQ+S +R+ K SD +  G  +  K++D +
Sbjct: 268 VGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQISRDRIEKPSDALSIGQEIEAKVVDLN 327

Query: 679 DRG-KIKLSMKVV 690
           +   KI LS+K +
Sbjct: 328 EADKKISLSIKAL 340



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV--WVKLLDFDDRG 681
           +G V  V DFGAF+   G  DGL+HIS++S  R      V K GD+V  ++K ++ D   
Sbjct: 190 EGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRTENPKKVYKIGDSVKCFIKEINGD--- 245

Query: 682 KIKLSMKVVDQN 693
           KI LS+K  D N
Sbjct: 246 KIALSVKYPDLN 257


>gi|227551165|ref|ZP_03981214.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
 gi|257887717|ref|ZP_05667370.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
 gi|257896211|ref|ZP_05675864.1| ribosomal protein S1 [Enterococcus faecium Com12]
 gi|227179727|gb|EEI60699.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
 gi|257823771|gb|EEV50703.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
 gi|257832776|gb|EEV59197.1| ribosomal protein S1 [Enterococcus faecium Com12]
          Length = 417

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SDV+   D V VK+L  + ++
Sbjct: 214 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 272

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 273 ERVSLSIK 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 296 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 356 PEEHRIALSIKALEE 370


>gi|195978262|ref|YP_002123506.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974967|gb|ACG62493.1| SSU ribosomal protein Rps1 [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 400

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D++  G  V VK+LD    D
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDMLTVGQEVTVKVLDVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA++    +        +  G V ++  FGAF+   G  DGLVH+++LS ER      V
Sbjct: 178 EAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           V  G+ V VK+L  D+  G++ LS+K
Sbjct: 237 VSVGEEVEVKVLALDEEAGRVSLSLK 262


>gi|262282821|ref|ZP_06060588.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
 gi|262261073|gb|EEY79772.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
          Length = 401

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+ +   
Sbjct: 281 VIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNPAN 340

Query: 682 -KIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|251782575|ref|YP_002996877.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391204|dbj|BAH81663.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127399|gb|ADX24696.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 401

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+E    +        +  G V ++  FGAF+   G  DGLVH+++LS ER      V
Sbjct: 178 EAAKEARTEVFSKLSEGAVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           V  G+ V VK+L  D+  G++ LS+K
Sbjct: 237 VSVGEEVEVKVLSIDEEAGRVSLSLK 262


>gi|325289809|ref|YP_004265990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965210|gb|ADY55989.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 662

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V ++ DFGAF+   G  DGL+H+S ++  RV+  SD+V  GD V V+++  D  +
Sbjct: 472 VVQGVVRRLTDFGAFIDLGGV-DGLLHVSDMAFSRVSNPSDIVNIGDEVEVQIISVDQSK 530

Query: 681 GKIKLSMKVVDQN 693
           G+I L +K +  N
Sbjct: 531 GRISLGLKQLKTN 543



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V    + +VV++  FGAFV      D L+HISQL+  RV K  +VVK GD +  K+++  
Sbjct: 554 VGSTVQAKVVRIAVFGAFVQLEDGIDALIHISQLADRRVGKVDEVVKIGDVIEAKIIECK 613

Query: 679 -DRGKIKLSMK 688
            +  +I LS++
Sbjct: 614 PEEKRISLSIR 624


>gi|322411908|gb|EFY02816.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 401

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+E    +        +  G V ++  FGAF+   G  DGLVH+++LS ER      V
Sbjct: 178 EAAKEARTEVFSKLSEGAVVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSV 236

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           V  G+ V VK+L  D+  G++ LS+K
Sbjct: 237 VSVGEEVEVKVLSIDEEAGRVSLSLK 262


>gi|289422374|ref|ZP_06424220.1| ribosomal protein S1 [Peptostreptococcus anaerobius 653-L]
 gi|289157209|gb|EFD05828.1| ribosomal protein S1 [Peptostreptococcus anaerobius 653-L]
          Length = 412

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE EAA+     + +  EV +   G+V  +M +GAF+   G  +GL HI+ LS  RVA  
Sbjct: 207 AEREAAKIAREELFNSLEVGEKRTGKVTNIMSYGAFIDLGGV-EGLAHINNLSWTRVADV 265

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
             VV  GD V V + D +   K I LS+K  D++  K I
Sbjct: 266 ESVVSVGDEVDVYIQDINPENKRIALSLKNPDEDPWKKI 304



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            +V++++D GAFV      +  + I +LS +RV K  DVV  GD V   ++ F+ D  ++
Sbjct: 316 AKVLRIIDKGAFVEVKPGVEAYLPIGELSEDRVNKVEDVVNIGDEVKAAIIKFNPDTKRM 375

Query: 684 KLSMK 688
            LS+K
Sbjct: 376 MLSIK 380


>gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 503

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 213 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 271

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 272 RERVSLSLKATQED 285



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D 
Sbjct: 295 QIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDI 354

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K  ++  G
Sbjct: 355 DLERRRISLSLKQANEAFG 373


>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
 gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
          Length = 243

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE--DEQYVDSLSGT 369
           +R+DGR  E +R  + ++G+L R  GS+   +G+T+A+  +  G  +  D+  +      
Sbjct: 9   LRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASIN-GPHQAGDKAKIKH---- 63

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
            R      Y+    +T E        +R I   +L R      +  T  +P + + I  +
Sbjct: 64  DRVHINFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAI-LTDLYPKSQIDIHVQ 122

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           I ++DG +  A +  ++LALMDAGVP+   +      LV
Sbjct: 123 ILQADGGNYSACINAATLALMDAGVPMKDFICSCTASLV 161


>gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group]
 gi|113548409|dbj|BAF11852.1| Os03g0315800 [Oryza sativa Japonica Group]
          Length = 390

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ GDT+ V +L  D
Sbjct: 242 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 300

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 301 RERGRVSLSTKKLEPTPG 318


>gi|88810653|ref|ZP_01125910.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
 gi|88792283|gb|EAR23393.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
          Length = 563

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+VV  GD V VK+L FD +
Sbjct: 193 QVLKGIVKNLTDYGAFVDLGGI-DGLLHITDMAWRRVKHPSEVVNVGDEVDVKVLKFDRE 251

Query: 680 RGKIKLSMKVVDQNTGKPI 698
           R ++ L +K + ++  + I
Sbjct: 252 RNRVSLGLKQLGEDPWENI 270



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE ++++ G+V  + D+G+FV      +GLVH+S++  T +    + VV  G+ V V +L
Sbjct: 275 PESSRVF-GRVTNITDYGSFVEIEEGVEGLVHVSEMDWTNKNVNPAKVVTIGEEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R ++ L MK    N
Sbjct: 334 DIDEERRRVSLGMKQCQAN 352



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG FV   G  DGLVH+S LS     + +    K+G+ V   +L  D +R +
Sbjct: 369 GQIKSITDFGIFVGLAGGIDGLVHLSDLSWNITGEEAVRRYKKGEEVETVVLSVDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++Q+
Sbjct: 429 ISLGIKQLEQD 439


>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
 gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
          Length = 247

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 25/209 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R I+ Q+G+  R  GS+ + +G+T+ I+    G RE      S+SG   
Sbjct: 12  LRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTK-IIAAVYGPRE-----ISVSGQSI 65

Query: 372 ND-FMMHYNFLPCATGEVSRMGAPSRREIGH------GRLARRAIHPVLPQTAQFPYT-L 423
            D  ++   F   +     R   P ++  G         L ++A    + QT  +P + +
Sbjct: 66  FDRAIVKCEFATSSFSTTER--KPQQKTKGDRATTEISNLVKQAFESTI-QTHLYPRSQI 122

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI---S 480
            I  ++ +SDG    A +  S+LAL+DAG+ +   V  ++   + DG   + L+ I   S
Sbjct: 123 NIYIQVLQSDGGLKAAAINASTLALIDAGISMKDFVCAVSTSCI-DGVAVLDLNHIEERS 181

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           G  D L  +  ++     G+ ++ MD K+
Sbjct: 182 GGPDCLLSIQPQIG----GVISLNMDSKV 206


>gi|222153157|ref|YP_002562334.1| 30S ribosomal protein S1 [Streptococcus uberis 0140J]
 gi|222113970|emb|CAR42251.1| putative 30S ribosomal protein S1 [Streptococcus uberis 0140J]
          Length = 405

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           +  G V ++  FGAF+   G  DGLVH+++LS ER      VV  GD V VK+L  D+  
Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGDEVEVKVLSIDEEA 254

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 255 GRVSLSLK 262


>gi|168334506|ref|ZP_02692672.1| 30S ribosomal protein S1 [Epulopiscium sp. 'N.t. morphotype B']
          Length = 373

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y G++ K+M++GAFV   G  +GL+H S LS  R+    D+V+EG  V V ++  D + G
Sbjct: 206 YIGKITKLMNYGAFVDLDGI-EGLIHNSDLSWSRIKHPKDIVQEGQEVEVSIISIDRENG 264

Query: 682 KIKLSMKVVDQN 693
           KI L++K ++ +
Sbjct: 265 KIALALKDINND 276



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V +   FGAFV      +GL+HISQ+ST R  K  DV+  G  V VK++  
Sbjct: 286 EEGQLVKGIVTRFALFGAFVRIADGVEGLIHISQISTPRPTKPQDVLTSGQEVEVKIIKI 345

Query: 678 DDRGK-IKLSM 687
           D   K I LS+
Sbjct: 346 DKAEKRISLSL 356


>gi|219667445|ref|YP_002457880.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219537705|gb|ACL19444.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 721

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  ++DFGAF+      DGLVHISQ+S + +    +V+  GD V V++L  D  R
Sbjct: 644 ILEGTVRNIVDFGAFIDIGVKHDGLVHISQISEKFIKHPMEVLSVGDIVKVRVLGIDTAR 703

Query: 681 GKIKLSMK 688
            ++ LSMK
Sbjct: 704 ERVSLSMK 711


>gi|152966892|ref|YP_001362676.1| 30S ribosomal protein S1 [Kineococcus radiotolerans SRS30216]
 gi|151361409|gb|ABS04412.1| RNA binding S1 domain protein [Kineococcus radiotolerans SRS30216]
          Length = 505

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 214 QVRSGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 272

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 273 RERVSLSLKATQED 286



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+    ++VK++D D
Sbjct: 297 IGQVVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEVPEQVVQVNSDIFVKVIDID 356

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 357 LERRRISLSLK 367


>gi|224475651|ref|YP_002633257.1| hypothetical protein Sca_0159 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420258|emb|CAL27072.1| putative RNA binding protein with S1 domain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 136

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++ + V    + +  GD V VK+L  
Sbjct: 4   EVGSKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADKYVENVEEHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS+K
Sbjct: 64  ADDGKISLSIK 74


>gi|166031537|ref|ZP_02234366.1| hypothetical protein DORFOR_01237 [Dorea formicigenerans ATCC
           27755]
 gi|166028514|gb|EDR47271.1| hypothetical protein DORFOR_01237 [Dorea formicigenerans ATCC
           27755]
          Length = 717

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I KG V  V+DFGAFV     +DGLVHISQ++ ++  K   +VV  GD V VK++  D  
Sbjct: 647 ILKGTVRNVIDFGAFVDIGVHQDGLVHISQMTNKKFIKHPLEVVSVGDIVDVKVMSVDLK 706

Query: 680 RGKIKLSMKVV 690
           + +I+L+MK V
Sbjct: 707 KKRIQLTMKDV 717


>gi|18311132|ref|NP_563066.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13]
 gi|18145815|dbj|BAB81856.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13]
          Length = 378

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ 
Sbjct: 277 KVGNVVLGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNI 336

Query: 678 DDRGKIKLSMKVVD 691
           DD  K K+S+ + D
Sbjct: 337 DDENK-KMSLSIKD 349



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+V ++  FGAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +
Sbjct: 199 KGKVTRLAKFGAFVDIGGV-EGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRER 257

Query: 683 IKLSMKVVDQN 693
           I LS+K V +N
Sbjct: 258 IALSLKDVIKN 268


>gi|295698418|ref|YP_003603073.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
 gi|291157307|gb|ADD79752.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
          Length = 554

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAF+   G  DGL+HI+ +S +RV   S++VK GD + VK+L FD D+ ++
Sbjct: 199 GIVKNLTDYGAFIDLGGV-DGLLHITDISWKRVKHPSEIVKIGDNIKVKVLKFDKDKSRV 257

Query: 684 KLSMK 688
            L +K
Sbjct: 258 SLGLK 262



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH S +S +   +   V  K+GD +   +L  D +R +
Sbjct: 371 GKIKSITDFGIFIELNGGIDGLVHSSDVSWDNSYEEESVKYKKGDLISAVVLQVDFERER 430

Query: 683 IKLSMKVVDQN 693
           I L +K + ++
Sbjct: 431 ISLGIKQLSED 441


>gi|294931469|ref|XP_002779890.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
 gi|239889608|gb|EER11685.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
          Length = 1239

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 9/87 (10%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVA-----KTSDVVKEGDT 669
           E+  I++G V +VM++G FV F    G ++GLVH+ ++     A       SD+VK   +
Sbjct: 264 ELYTIHRGTVQRVMEYGCFVAFRTQEGEKEGLVHVGEILPASSAGRSRMSASDLVKRNQS 323

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V+VK++      KI LSM+  DQ TG+
Sbjct: 324 VYVKIVGLAG-SKISLSMREADQKTGE 349


>gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
 gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
          Length = 489

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I  G+V K++ FG FV      +GLVH+S+L+T  +     V K GD ++VK++D 
Sbjct: 293 KIGQIVPGKVTKLVPFGVFVRVEDGIEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDI 352

Query: 678 D-DRGKIKLSMK 688
           D +R +I LS+K
Sbjct: 353 DLERRRISLSLK 364



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 211 QVRTGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFD 269

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 270 RERVSLSLKATQED 283


>gi|314935980|ref|ZP_07843330.1| S1 RNA binding domain protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655986|gb|EFS19728.1| S1 RNA binding domain protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 715

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I SI D+ +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD 
Sbjct: 633 ILSIEDLSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKYVKNPMDIISVGDI 691

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQN 693
           V V +L+  D+ K K+++ +++ N
Sbjct: 692 VDVWILNI-DKNKEKVALTMINPN 714


>gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium
           HF0200_09I09]
          Length = 677

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA E  + +    EV  +  G V KV+ FGAF    G  +GL H+S+L   R+    +++
Sbjct: 353 AAPEQWQDLISQYEVGDVVPGIVTKVVAFGAFTRLPGPVEGLAHVSELVDRRINSPEEIL 412

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            EGD V +K++  + DR ++ LS++   Q  
Sbjct: 413 IEGDVVPLKIVRIEHDRHRLGLSLREARQEA 443



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  + +FG FV   GA DGL H+S+LS +R A    + + G  + V ++  D D
Sbjct: 284 EVRKGTVTSIRNFGVFVDLGGA-DGLAHLSELSWDRNADPEQLFQVGQDIDVYIMRIDRD 342

Query: 680 RGKIKLSMK 688
             KI LS++
Sbjct: 343 SKKIALSVR 351


>gi|294868136|ref|XP_002765399.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
 gi|239865418|gb|EEQ98116.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
          Length = 1016

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 9/87 (10%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVA-----KTSDVVKEGDT 669
           E+  I++G V +VM++G FV F    G ++GLVH+ ++     A       SD+VK   +
Sbjct: 120 ELYTIHRGTVQRVMEYGCFVAFRTQEGEKEGLVHVGEILPASSAGRSRMSASDLVKRNQS 179

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V+VK++      KI LSM+  DQ TG+
Sbjct: 180 VYVKIVGLAG-SKISLSMREADQKTGE 205


>gi|254487164|ref|ZP_05100369.1| transcriptional accessory protein [Roseobacter sp. GAI101]
 gi|214044033|gb|EEB84671.1| transcriptional accessory protein [Roseobacter sp. GAI101]
          Length = 802

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 21/145 (14%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIE------------- 604
           R ++   G+ +R I+  + A         +DD   +      LAE+E             
Sbjct: 604 RKIVQACGRDVRAIMGDSAALAGLNAEQFVDDSFGLPTVRDILAELEKPGRDPRPAFKTA 663

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +  E I SITD+ +     +G V  V  FGAFV     +DGLVH+SQL+   V    +VV
Sbjct: 664 SFAEGIDSITDL-KPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVV 722

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688
           K GD V V++ + D  R +I L+M+
Sbjct: 723 KAGDVVRVRVTEVDVPRKRIGLTMR 747


>gi|166031130|ref|ZP_02233959.1| hypothetical protein DORFOR_00815 [Dorea formicigenerans ATCC
           27755]
 gi|166028977|gb|EDR47734.1| hypothetical protein DORFOR_00815 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V  + ++GAFV       GLVH+SQ+S +R+    DV+  GD V VK++  
Sbjct: 120 KVGSVLTGTVESLQNYGAFVRLEDGLSGLVHVSQISQKRIKFPKDVLNVGDEVQVKVIGV 179

Query: 678 DDRGKIKLSMK 688
            D GKI LSMK
Sbjct: 180 KD-GKISLSMK 189


>gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
 gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
          Length = 253

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R ++     ++   GS L   GDT+ I   TL    +E+    + G  +
Sbjct: 1   MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATL----EERVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G    R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++DA            +P++  +A  ++G+V  G++ ++ 
Sbjct: 117 DVIQADGGTRTASITGAFVAMVDAMQKLVDSGTWKQLPLNDFLAATSVGVV--GEEAVL- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 -DLNYKEDSTAIVDMNVVMTGKG 195


>gi|121608029|ref|YP_995836.1| RNA-binding S1 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552669|gb|ABM56818.1| RNA binding S1 domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 794

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++ ITD+ E   + +G V  V  FGAFV     +D LVH+SQL+ + V    +VVK G  
Sbjct: 657 VQDITDLKE-GMVLEGTVSNVAQFGAFVDLGVHQDALVHVSQLAHKFVNDAREVVKTGAI 715

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V V++L+ D  R +I L+MK +D    +P
Sbjct: 716 VKVRVLEVDLPRKRIALTMK-LDAAPARP 743


>gi|89896725|ref|YP_520212.1| hypothetical protein DSY3979 [Desulfitobacterium hafniense Y51]
 gi|89336173|dbj|BAE85768.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 721

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  ++DFGAF+      DGLVHISQ+S + +    +V+  GD V V++L  D  R
Sbjct: 644 ILEGTVRNIVDFGAFIDIGVKHDGLVHISQISEKFIKHPMEVLSVGDIVKVRVLGIDTAR 703

Query: 681 GKIKLSMK 688
            ++ LSMK
Sbjct: 704 ERVSLSMK 711


>gi|315640571|ref|ZP_07895678.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
 gi|315483678|gb|EFU74167.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
          Length = 404

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I +  +V    +G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGDTV 
Sbjct: 283 NIEEKAQVGATLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDTVQ 342

Query: 672 VKLLDFDDRG-KIKLSMKVV 690
           VK+L+ +    +I LS+K +
Sbjct: 343 VKVLEVNPTDHRIALSIKAL 362



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           +G V ++ +FGAFV   G  DGLVH+S++S   V K SDV+  GDTV V +L  D    +
Sbjct: 210 EGNVARLTNFGAFVDLGGI-DGLVHVSEISHGHVGKPSDVLAVGDTVNVAVLSIDPTTER 268

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 269 ISLSIK 274


>gi|206969559|ref|ZP_03230513.1| general stress protein 13 [Bacillus cereus AH1134]
 gi|218235815|ref|YP_002369692.1| general stress protein 13 [Bacillus cereus B4264]
 gi|218900051|ref|YP_002448462.1| general stress protein 13 [Bacillus cereus G9842]
 gi|206735247|gb|EDZ52415.1| general stress protein 13 [Bacillus cereus AH1134]
 gi|218163772|gb|ACK63764.1| general stress protein 13 [Bacillus cereus B4264]
 gi|218543520|gb|ACK95914.1| general stress protein 13 [Bacillus cereus G9842]
 gi|326942665|gb|AEA18561.1| general stress protein 13 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 114

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 13  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 73  SLSLKAAKRKQGRILI 88


>gi|77456487|ref|YP_345992.1| RNA binding S1 [Pseudomonas fluorescens Pf0-1]
 gi|77380490|gb|ABA72003.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 774

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  + D+ ++  I +G V  V  FGAFV     +DGLVHIS LS + +    + VK 
Sbjct: 637 QEGVEDLKDL-QLGMILEGVVTNVTAFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKA 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+++ D  R ++ LSM++ D
Sbjct: 696 GDVVKVKVMEVDIPRKRVGLSMRMSD 721


>gi|302385380|ref|YP_003821202.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
 gi|302196008|gb|ADL03579.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
          Length = 366

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E V K +DV+  G  +  +++DF+
Sbjct: 276 VGNVVSGKVARMTDFGAFVELEPGVDALLHVSQISKEHVDKPADVLAIGQEIEARVVDFN 335

Query: 679 D-RGKIKLSMKVV 690
           +   KI LS+K +
Sbjct: 336 EGDKKISLSIKAL 348


>gi|270292576|ref|ZP_06198787.1| ribosomal protein S1 [Streptococcus sp. M143]
 gi|293365610|ref|ZP_06612319.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|307703559|ref|ZP_07640501.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|315613325|ref|ZP_07888234.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296]
 gi|322375396|ref|ZP_08049909.1| ribosomal protein S1 [Streptococcus sp. C300]
 gi|331266202|ref|YP_004325832.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5]
 gi|270278555|gb|EFA24401.1| ribosomal protein S1 [Streptococcus sp. M143]
 gi|291315978|gb|EFE56422.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|307622966|gb|EFO01961.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|315314560|gb|EFU62603.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296]
 gi|321279659|gb|EFX56699.1| ribosomal protein S1 [Streptococcus sp. C300]
 gi|326682874|emb|CBZ00491.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5]
          Length = 400

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G  V VK+LD + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|82703189|ref|YP_412755.1| 30S ribosomal protein S1 [Nitrosospira multiformis ATCC 25196]
 gi|82411254|gb|ABB75363.1| SSU ribosomal protein S1P [Nitrosospira multiformis ATCC 25196]
          Length = 571

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++
Sbjct: 203 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVISVGDEVTAKVLKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 262 NRVSLGMK 269



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L+ D +R +
Sbjct: 291 GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKVVQLGDEVEVMILEIDEERRR 350

Query: 683 IKLSMK 688
           I L MK
Sbjct: 351 ISLGMK 356



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG F+   G  DGLVH+S LS  +  + +    K+GD V   +L  D +R 
Sbjct: 377 RGQIKSITDFGVFIGLQGGIDGLVHLSDLSWNQPGEEAVRNYKKGDEVEAVVLSIDVERE 436

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 437 RISLGIK---QLEGDPF 450


>gi|332288796|ref|YP_004419648.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
 gi|330431692|gb|AEC16751.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
          Length = 549

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV    ++V  GD V VK+L FD DR +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPGEIVNVGDEVTVKVLKFDRDRTR 254

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 255 VSLGLKQLGQD 265



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 578 VEQTGAKVNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           V+  G  VN+ D+ TVK+          SL   +  ++   +I +   VN    G+V  +
Sbjct: 228 VKHPGEIVNVGDEVTVKVLKFDRDRTRVSLGLKQLGQDPWAAIAENYPVNSKLTGKVTNL 287

Query: 631 MDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ D +R +I L +K
Sbjct: 288 TDYGCFVEILDGIEGLVHVSEMDWTNKNIHPSKVVSVGDEVEVMVLEIDEERRRISLGLK 347


>gi|302764282|ref|XP_002965562.1| hypothetical protein SELMODRAFT_6138 [Selaginella moellendorffii]
 gi|300166376|gb|EFJ32982.1| hypothetical protein SELMODRAFT_6138 [Selaginella moellendorffii]
          Length = 169

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 16/100 (16%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD----------- 662
           ++PE+  I +G+V  V  FG FV   G R  GLVH+SQ+S   V +  D           
Sbjct: 8   ELPELYSICRGRVHSVKPFGLFVRLEGYRAHGLVHLSQVSNHEVTQREDSDEVKMQALAA 67

Query: 663 VVKEGDTVWVKLL----DFDDRGKIKLSMKVVDQNTGKPI 698
           +  +G+ +WVK++    + D   KI  SMK+V Q  G+ +
Sbjct: 68  IAGQGEEIWVKIIAVRREEDGSVKIGCSMKLVGQTDGRDL 107


>gi|148543502|ref|YP_001270872.1| RNA-binding S1 domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|184152909|ref|YP_001841250.1| hypothetical protein LAR_0254 [Lactobacillus reuteri JCM 1112]
 gi|194467677|ref|ZP_03073664.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227363651|ref|ZP_03847765.1| RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|227544682|ref|ZP_03974731.1| RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300909076|ref|ZP_07126539.1| S1 RNA-binding domain protein [Lactobacillus reuteri SD2112]
 gi|325681846|ref|ZP_08161365.1| S1 RNA-binding domain protein [Lactobacillus reuteri MM4-1A]
 gi|148530536|gb|ABQ82535.1| RNA binding S1 domain protein [Lactobacillus reuteri DSM 20016]
 gi|183224253|dbj|BAG24770.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|194454713|gb|EDX43610.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227071320|gb|EEI09629.1| RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|227185328|gb|EEI65399.1| RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300894483|gb|EFK87841.1| S1 RNA-binding domain protein [Lactobacillus reuteri SD2112]
 gi|324978937|gb|EGC15885.1| S1 RNA-binding domain protein [Lactobacillus reuteri MM4-1A]
          Length = 164

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHISQ+S + +    DV+  GD V  K+   
Sbjct: 4   EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDEVTAKVTRI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS+K
Sbjct: 64  GDDGKIALSIK 74


>gi|322376679|ref|ZP_08051172.1| S1 RNA binding domain protein [Streptococcus sp. M334]
 gi|321282486|gb|EFX59493.1| S1 RNA binding domain protein [Streptococcus sp. M334]
          Length = 718

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 642 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 701

Query: 677 FDDRGKIKLSMKVVDQNT 694
             +R K+ LS+   D++ 
Sbjct: 702 -TEREKVNLSLLAPDESN 718


>gi|307709199|ref|ZP_07645658.1| 40S ribosomal protein S1 [Streptococcus mitis SK564]
 gi|307620145|gb|EFN99262.1| 40S ribosomal protein S1 [Streptococcus mitis SK564]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|289167754|ref|YP_003446023.1| 30S ribosomal protein S1 [Streptococcus mitis B6]
 gi|288907321|emb|CBJ22158.1| 30S ribosomal protein S1 [Streptococcus mitis B6]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|255659244|ref|ZP_05404653.1| RNA-binding protein [Mitsuokella multacida DSM 20544]
 gi|260848698|gb|EEX68705.1| RNA-binding protein [Mitsuokella multacida DSM 20544]
          Length = 152

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + +FGAFV     + GL+HIS+++   V    D + E D V VK+L  DDRGKI LS+K
Sbjct: 16  ITNFGAFVELPEGKTGLIHISEVADVYVKDVHDFLSEKDKVKVKVLSIDDRGKIALSIK 74


>gi|145594251|ref|YP_001158548.1| RNA-binding S1 domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145303588|gb|ABP54170.1| RNA binding S1 domain protein [Salinispora tropica CNB-440]
          Length = 803

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 608 EMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           E + +I D VP +  I +G V  V  FGAFV     +DGLVH+S +S   V    +VVK 
Sbjct: 642 EGVETIADLVPGL--ILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSRTFVRDPHEVVKS 699

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V V++LD D  R +I L++++ D
Sbjct: 700 GDVVKVRVLDVDVPRKRISLTLRLDD 725


>gi|15902808|ref|NP_358358.1| 30S ribosomal protein S1 [Streptococcus pneumoniae R6]
 gi|116515525|ref|YP_816245.1| 30S ribosomal protein S1 [Streptococcus pneumoniae D39]
 gi|148984592|ref|ZP_01817860.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71]
 gi|148988281|ref|ZP_01819728.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73]
 gi|148993674|ref|ZP_01823121.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68]
 gi|148997062|ref|ZP_01824716.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70]
 gi|149007194|ref|ZP_01830858.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74]
 gi|149021729|ref|ZP_01835760.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72]
 gi|168485810|ref|ZP_02710318.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490295|ref|ZP_02714494.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           SP195]
 gi|168490951|ref|ZP_02715094.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC0288-04]
 gi|168493016|ref|ZP_02717159.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832652|ref|YP_001694315.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Hungary19A-6]
 gi|182683776|ref|YP_001835523.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14]
 gi|194397407|ref|YP_002037497.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54]
 gi|221231643|ref|YP_002510795.1| 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC 700669]
 gi|225854368|ref|YP_002735880.1| 30S ribosomal protein S1 [Streptococcus pneumoniae JJA]
 gi|225856529|ref|YP_002738040.1| 30S ribosomal protein S1 [Streptococcus pneumoniae P1031]
 gi|225858661|ref|YP_002740171.1| 30S ribosomal protein S1 [Streptococcus pneumoniae 70585]
 gi|225861244|ref|YP_002742753.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229157|ref|ZP_06962838.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255735|ref|ZP_06979321.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503131|ref|YP_003725071.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A]
 gi|307067459|ref|YP_003876425.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200]
 gi|15458359|gb|AAK99568.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae R6]
 gi|116076101|gb|ABJ53821.1| ribosomal protein S1 [Streptococcus pneumoniae D39]
 gi|147756762|gb|EDK63802.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70]
 gi|147761232|gb|EDK68199.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74]
 gi|147922983|gb|EDK74098.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71]
 gi|147925962|gb|EDK77036.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73]
 gi|147927754|gb|EDK78777.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68]
 gi|147930190|gb|EDK81176.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72]
 gi|168995154|gb|ACA35766.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182629110|gb|ACB90058.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14]
 gi|183571017|gb|EDT91545.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571355|gb|EDT91883.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           SP195]
 gi|183574635|gb|EDT95163.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC0288-04]
 gi|183576994|gb|EDT97522.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC3059-06]
 gi|194357074|gb|ACF55522.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54]
 gi|220674103|emb|CAR68621.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC
           700669]
 gi|225721143|gb|ACO16997.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           70585]
 gi|225723388|gb|ACO19241.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           JJA]
 gi|225725584|gb|ACO21436.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           P1031]
 gi|225728251|gb|ACO24102.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238726|gb|ADI69857.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A]
 gi|301793998|emb|CBW36396.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV104]
 gi|301799856|emb|CBW32430.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae OXC141]
 gi|306408996|gb|ADM84423.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200]
 gi|327390213|gb|EGE88556.1| hypothetical protein SPAR5_0822 [Streptococcus pneumoniae GA04375]
 gi|332073191|gb|EGI83670.1| 30S ribosomal protein S1 [Streptococcus pneumoniae GA17570]
 gi|332204867|gb|EGJ18932.1| hypothetical protein SPAR120_0834 [Streptococcus pneumoniae
           GA47901]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|322376414|ref|ZP_08050907.1| ribosomal protein S1 [Streptococcus sp. M334]
 gi|321282221|gb|EFX59228.1| ribosomal protein S1 [Streptococcus sp. M334]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|293570248|ref|ZP_06681317.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
 gi|291609655|gb|EFF38916.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
          Length = 409

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SDV+   D V VK+L  + ++
Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 264

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 265 ERVSLSIK 272



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 288 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 348 PEEHRIALSIKALEE 362


>gi|261207579|ref|ZP_05922264.1| ribosomal protein S1 [Enterococcus faecium TC 6]
 gi|289565091|ref|ZP_06445544.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
 gi|260077962|gb|EEW65668.1| ribosomal protein S1 [Enterococcus faecium TC 6]
 gi|289163098|gb|EFD10945.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
          Length = 409

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SDV+   D V VK+L  + ++
Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQ 264

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 265 ERVSLSIK 272



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 288 VGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 348 PEEHRIALSIKALEE 362


>gi|257877994|ref|ZP_05657647.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
 gi|257881219|ref|ZP_05660872.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
 gi|257889807|ref|ZP_05669460.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
 gi|257892256|ref|ZP_05671909.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
 gi|314938007|ref|ZP_07845317.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
 gi|314948740|ref|ZP_07852112.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
 gi|314951758|ref|ZP_07854797.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
 gi|257812222|gb|EEV40980.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
 gi|257816877|gb|EEV44205.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
 gi|257826167|gb|EEV52793.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
 gi|257828635|gb|EEV55242.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
 gi|313596037|gb|EFR74882.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
 gi|313642582|gb|EFS07162.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
 gi|313644806|gb|EFS09386.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
          Length = 417

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SDV+   D V VK+L  + ++
Sbjct: 214 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQ 272

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 273 ERVSLSIK 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 296 VGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 356 PEEHRIALSIKALEE 370


>gi|323463927|gb|ADX76080.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius
           ED99]
          Length = 716

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--T 669
           SI D+ +  K+  G V  V+DFGAFV     +DGLVHIS+L+ + +    D+V  GD   
Sbjct: 636 SIEDLSKGMKL-NGTVRNVVDFGAFVDIGIKQDGLVHISKLAKKFIKHPMDIVSVGDIVE 694

Query: 670 VWVKLLDFDDRGKIKLSM 687
           VW++ +D +++GK+ L+M
Sbjct: 695 VWIENID-ENKGKVALTM 711


>gi|293379547|ref|ZP_06625689.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
 gi|292641856|gb|EFF60024.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
          Length = 409

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SDV+   D V VK+L  + ++
Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQ 264

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 265 ERVSLSIK 272



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 288 VGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 348 PEEHRIALSIKALEE 362


>gi|163942616|ref|YP_001647500.1| general stress protein 13 [Bacillus weihenstephanensis KBAB4]
 gi|229014089|ref|ZP_04171211.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
 gi|229062574|ref|ZP_04199884.1| RNA binding S1 domain protein [Bacillus cereus AH603]
 gi|229135728|ref|ZP_04264502.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|229169624|ref|ZP_04297326.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|163864813|gb|ABY45872.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228613820|gb|EEK70943.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|228647733|gb|EEL03794.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|228716677|gb|EEL68373.1| RNA binding S1 domain protein [Bacillus cereus AH603]
 gi|228747197|gb|EEL97078.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
          Length = 114

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 13  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 73  SLSLKAAKRKQGRILI 88


>gi|89100513|ref|ZP_01173374.1| hypothetical protein B14911_02120 [Bacillus sp. NRRL B-14911]
 gi|89084779|gb|EAR63919.1| hypothetical protein B14911_02120 [Bacillus sp. NRRL B-14911]
          Length = 156

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|332076140|gb|EGI86606.1| hypothetical protein SPAR68_0864 [Streptococcus pneumoniae GA41301]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|319893018|ref|YP_004149893.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162714|gb|ADV06257.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 716

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--T 669
           SI D+ +  K+  G V  V+DFGAFV     +DGLVHIS+L+ + +    D+V  GD   
Sbjct: 636 SIEDLSKGMKL-NGTVRNVVDFGAFVDIGIKQDGLVHISKLAKKFIKHPMDIVSVGDIVE 694

Query: 670 VWVKLLDFDDRGKIKLSM 687
           VW++ +D +++GK+ L+M
Sbjct: 695 VWIENID-ENKGKVALTM 711


>gi|306829662|ref|ZP_07462852.1| 30S ribosomal protein S1 [Streptococcus mitis ATCC 6249]
 gi|304428748|gb|EFM31838.1| 30S ribosomal protein S1 [Streptococcus mitis ATCC 6249]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G  V VK+LD + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira
           defluvii]
 gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira
           defluvii]
          Length = 799

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +   + +G V  V  FGAFV     +DGLVH+S L+ + V    +VVK 
Sbjct: 664 RDGVESLADL-QPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALANKFVKDPHEVVKP 722

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           G  V VK+L  D  R +I L+M++ D  T
Sbjct: 723 GQIVKVKVLAVDVPRQRISLTMRMEDAAT 751


>gi|254490959|ref|ZP_05104141.1| ribosomal protein S1 [Methylophaga thiooxidans DMS010]
 gi|224463868|gb|EEF80135.1| ribosomal protein S1 [Methylophaga thiooxydans DMS010]
          Length = 530

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E  A RE   ++ +  E  K+ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S
Sbjct: 177 ENSAERE---ALLETLEEGKVVKGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVKHPS 232

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +VV  GD + V++L FD +R ++ L +K +  +  K I
Sbjct: 233 EVVAIGDEIEVQVLKFDKERERVSLGLKQMGDDPWKDI 270



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +I+ G+V  + D+G FV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PNSTRIH-GKVTNIADYGCFVEIEDGVEGLVHMSEMDWTNKNVHPSKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDAERRRISLGIKQCQAN 352


>gi|162448175|ref|YP_001621307.1| Tex protein-related transcription accessory protein [Acholeplasma
           laidlawii PG-8A]
 gi|161986282|gb|ABX81931.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Acholeplasma laidlawii PG-8A]
          Length = 724

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V DFGAFV      DGLVHIS+LS + V    DVV  G  V V +L+ D D+G+
Sbjct: 655 EGTVRNVTDFGAFVDVGLKNDGLVHISKLSNKFVKHPKDVVSVGQIVTVWVLNIDRDKGQ 714

Query: 683 IKLSM 687
           + L+M
Sbjct: 715 VGLTM 719


>gi|58581848|ref|YP_200864.1| transcription-related protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623748|ref|YP_451120.1| transcription-related protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576599|ref|YP_001913528.1| S1 RNA binding domain protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426442|gb|AAW75479.1| transcription-related protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367688|dbj|BAE68846.1| transcription-related protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521051|gb|ACD58996.1| S1 RNA binding domain protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 786

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD + VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIIKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I LS ++ D
Sbjct: 717 KRIALSCRLSD 727


>gi|313889985|ref|ZP_07823622.1| Tex-like protein N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121643|gb|EFR44745.1| Tex-like protein N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 713

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD  TVWV  +D  DR 
Sbjct: 642 EGTVRNVVDFGAFVDIGVHEDGLIHISEMSQTFVNHPSQVLSVGDVVTVWVSKIDL-DRH 700

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 701 KVNLSL 706


>gi|306829611|ref|ZP_07462801.1| YhgF like protein [Streptococcus mitis ATCC 6249]
 gi|304428697|gb|EFM31787.1| YhgF like protein [Streptococcus mitis ATCC 6249]
          Length = 709

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSMKVVDQN 693
             +R K+ LS+   D+ 
Sbjct: 693 -TEREKVNLSLLAPDET 708


>gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
 gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R+I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V+D     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSQADVDMNVIMTGKG 196


>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
          Length = 249

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 32/195 (16%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV       G+R   
Sbjct: 6   LLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKM 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-- 418
            +  S+   Q       Y+    +TGE        RR  G  + +   +H  L QT +  
Sbjct: 66  LHDRSVVNCQ-------YSMATFSTGE------RKRRPHGDRKSSEMTLH--LKQTFEAA 110

Query: 419 -----FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
                +P + + I  +I ++DG +    V  ++LA++DAG+P+   V   + G ++D   
Sbjct: 111 ILTQLYPRSQIDIYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCASSAGFIED--- 167

Query: 473 FIILSDISGDEDHLG 487
              L+D+S  E+  G
Sbjct: 168 -TPLADLSYVEEAAG 181


>gi|291543623|emb|CBL16732.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Ruminococcus sp. 18P13]
          Length = 156

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++Y+G V  +  +GAFV       G+VHIS+++   V+   D + E  TV VK+L  
Sbjct: 4   EIGQVYEGVVKGITPYGAFVDLADGVTGMVHISEVANVYVSNIRDHLTENQTVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
           ++ GKI LS+K
Sbjct: 64  NEAGKISLSIK 74


>gi|317132412|ref|YP_004091726.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470391|gb|ADU26995.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens
           harbinense YUAN-3]
          Length = 666

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I   ++V  M FGAF       DGL+HISQ++   VAK  D ++ G  V VK+++ 
Sbjct: 574 QVGDIVDAKIVNFMTFGAFAQIIPGVDGLIHISQIADHHVAKPQDELELGQEVRVKIIEI 633

Query: 678 -DDRGKIKLSMK 688
            +DR +I LS++
Sbjct: 634 EEDRKRISLSIR 645


>gi|209559262|ref|YP_002285734.1| 30S ribosomal protein S1 [Streptococcus pyogenes NZ131]
 gi|209540463|gb|ACI61039.1| SSU ribosomal protein S1p [Streptococcus pyogenes NZ131]
          Length = 401

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           +  G V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  
Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 255 GRVSLSLK 262


>gi|30264941|ref|NP_847318.1| general stress protein 13 [Bacillus anthracis str. Ames]
 gi|47530437|ref|YP_021786.1| general stress protein 13 [Bacillus anthracis str. 'Ames Ancestor']
 gi|47566934|ref|ZP_00237651.1| MW0837 [Bacillus cereus G9241]
 gi|49187760|ref|YP_031013.1| general stress protein 13 [Bacillus anthracis str. Sterne]
 gi|49480341|ref|YP_038921.1| general stress protein 13 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52140622|ref|YP_086205.1| general stress protein 13 [Bacillus cereus E33L]
 gi|65316891|ref|ZP_00389850.1| COG1098: Predicted RNA binding protein (contains ribosomal protein
           S1 domain) [Bacillus anthracis str. A2012]
 gi|165870810|ref|ZP_02215462.1| general stress protein 13 [Bacillus anthracis str. A0488]
 gi|167634998|ref|ZP_02393316.1| general stress protein 13 [Bacillus anthracis str. A0442]
 gi|167640042|ref|ZP_02398310.1| general stress protein 13 [Bacillus anthracis str. A0193]
 gi|170685687|ref|ZP_02876910.1| general stress protein 13 [Bacillus anthracis str. A0465]
 gi|170706916|ref|ZP_02897373.1| general stress protein 13 [Bacillus anthracis str. A0389]
 gi|177652259|ref|ZP_02934762.1| general stress protein 13 [Bacillus anthracis str. A0174]
 gi|190567121|ref|ZP_03020036.1| general stress protein 13 [Bacillus anthracis Tsiankovskii-I]
 gi|196033216|ref|ZP_03100629.1| general stress protein 13 [Bacillus cereus W]
 gi|196040462|ref|ZP_03107762.1| general stress protein 13 [Bacillus cereus NVH0597-99]
 gi|196043862|ref|ZP_03111099.1| general stress protein 13 [Bacillus cereus 03BB108]
 gi|218906099|ref|YP_002453933.1| general stress protein 13 [Bacillus cereus AH820]
 gi|225866875|ref|YP_002752253.1| general stress protein 13 [Bacillus cereus 03BB102]
 gi|227817669|ref|YP_002817678.1| general stress protein 13 [Bacillus anthracis str. CDC 684]
 gi|229603942|ref|YP_002869144.1| general stress protein 13 [Bacillus anthracis str. A0248]
 gi|254687233|ref|ZP_05151090.1| general stress protein 13 [Bacillus anthracis str. CNEVA-9066]
 gi|254725246|ref|ZP_05187029.1| general stress protein 13 [Bacillus anthracis str. A1055]
 gi|254735430|ref|ZP_05193138.1| general stress protein 13 [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740697|ref|ZP_05198388.1| general stress protein 13 [Bacillus anthracis str. Kruger B]
 gi|254753041|ref|ZP_05205077.1| general stress protein 13 [Bacillus anthracis str. Vollum]
 gi|254761384|ref|ZP_05213405.1| general stress protein 13 [Bacillus anthracis str. Australia 94]
 gi|300119698|ref|ZP_07057238.1| general stress protein 13 [Bacillus cereus SJ1]
 gi|301056390|ref|YP_003794601.1| RNA binding S1 domain-containing protein [Bacillus anthracis CI]
 gi|30259616|gb|AAP28804.1| general stress protein 13 [Bacillus anthracis str. Ames]
 gi|47505585|gb|AAT34261.1| general stress protein 13 [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556252|gb|EAL14586.1| MW0837 [Bacillus cereus G9241]
 gi|49181687|gb|AAT57063.1| general stress protein 13 [Bacillus anthracis str. Sterne]
 gi|49331897|gb|AAT62543.1| general stress protein 13 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51974091|gb|AAU15641.1| general stress protein 13 [Bacillus cereus E33L]
 gi|164713319|gb|EDR18844.1| general stress protein 13 [Bacillus anthracis str. A0488]
 gi|167512123|gb|EDR87501.1| general stress protein 13 [Bacillus anthracis str. A0193]
 gi|167529748|gb|EDR92497.1| general stress protein 13 [Bacillus anthracis str. A0442]
 gi|170128019|gb|EDS96889.1| general stress protein 13 [Bacillus anthracis str. A0389]
 gi|170670151|gb|EDT20891.1| general stress protein 13 [Bacillus anthracis str. A0465]
 gi|172082265|gb|EDT67331.1| general stress protein 13 [Bacillus anthracis str. A0174]
 gi|190561625|gb|EDV15595.1| general stress protein 13 [Bacillus anthracis Tsiankovskii-I]
 gi|195994645|gb|EDX58600.1| general stress protein 13 [Bacillus cereus W]
 gi|196025198|gb|EDX63868.1| general stress protein 13 [Bacillus cereus 03BB108]
 gi|196028594|gb|EDX67201.1| general stress protein 13 [Bacillus cereus NVH0597-99]
 gi|218537073|gb|ACK89471.1| general stress protein 13 [Bacillus cereus AH820]
 gi|225790437|gb|ACO30654.1| general stress protein 13 [Bacillus cereus 03BB102]
 gi|227007010|gb|ACP16753.1| general stress protein 13 [Bacillus anthracis str. CDC 684]
 gi|229268350|gb|ACQ49987.1| general stress protein 13 [Bacillus anthracis str. A0248]
 gi|298722926|gb|EFI63828.1| general stress protein 13 [Bacillus cereus SJ1]
 gi|300378559|gb|ADK07463.1| RNA binding S1 domain protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 114

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 13  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 73  SLSLKAAKRKQGRILI 88


>gi|315613267|ref|ZP_07888176.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
 gi|315314502|gb|EFU62545.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
          Length = 727

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ ++ +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  
Sbjct: 640 RQDVLDIKDL-KIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSV 698

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693
           GD  TVWVK +D  +R K+ LS+   D+ 
Sbjct: 699 GDLVTVWVKKID-TEREKVNLSLLAPDET 726


>gi|315302310|ref|ZP_07873200.1| protein YhgF [Listeria ivanovii FSL F6-596]
 gi|313629320|gb|EFR97563.1| protein YhgF [Listeria ivanovii FSL F6-596]
          Length = 725

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D+V  GD  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDIVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSMK 688
           +I L+M+
Sbjct: 712 RIALTMR 718


>gi|307704664|ref|ZP_07641564.1| 40S ribosomal protein S1 [Streptococcus mitis SK597]
 gi|307706411|ref|ZP_07643221.1| 40S ribosomal protein S1 [Streptococcus mitis SK321]
 gi|307708551|ref|ZP_07645016.1| S1 RNA binding domain protein [Streptococcus mitis NCTC 12261]
 gi|307615467|gb|EFN94675.1| S1 RNA binding domain protein [Streptococcus mitis NCTC 12261]
 gi|307618198|gb|EFN97355.1| 40S ribosomal protein S1 [Streptococcus mitis SK321]
 gi|307621773|gb|EFO00810.1| 40S ribosomal protein S1 [Streptococcus mitis SK597]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVKVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|296505343|ref|YP_003667043.1| general stress protein 13 [Bacillus thuringiensis BMB171]
 gi|296326395|gb|ADH09323.1| general stress protein 13 [Bacillus thuringiensis BMB171]
          Length = 114

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 13  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 73  SLSLKAAKRKQGRILI 88


>gi|55981717|ref|YP_145014.1| hypothetical protein TTHA1748 [Thermus thermophilus HB8]
 gi|55773130|dbj|BAD71571.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 125

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           FGAFV   G   GLVHISQ++ E V    D + EGD V V +   D +G++ LS+K
Sbjct: 19  FGAFVELAGGEQGLVHISQIAHEYVTNVRDYLNEGDIVQVLIKGRDAKGRLDLSIK 74


>gi|313890098|ref|ZP_07823733.1| putative ribosomal protein S1 [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121459|gb|EFR44563.1| putative ribosomal protein S1 [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 404

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           +  G V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  
Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 255 GRVSLSLK 262


>gi|283780187|ref|YP_003370942.1| 30S ribosomal protein S1 [Pirellula staleyi DSM 6068]
 gi|283438640|gb|ADB17082.1| ribosomal protein S1 [Pirellula staleyi DSM 6068]
          Length = 600

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 615 DVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           D+P   +  ++  G V K+ +FG FV      +GL+HIS+L+  +V    DVVK GD + 
Sbjct: 471 DIPGKYQPGQVVSGAVTKITNFGVFVGLEDGLEGLLHISELADHKVENPEDVVKVGDKID 530

Query: 672 VKLL--DFDDRGKIKLSMKVVD 691
           VK+L  D D+R KI LS K V+
Sbjct: 531 VKILRVDIDER-KIGLSRKRVE 551



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + KG VV VM +GAFV      +GLVHIS++S T RV   S++V  GD + V +L  
Sbjct: 303 VGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGV 362

Query: 678 DDRG-KIKLSMKVVDQN 693
           D  G ++ L MK   +N
Sbjct: 363 DKDGQQLSLGMKQTQEN 379



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 6/111 (5%)

Query: 589 DDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+    I  S  + IE  RE  R ++    E+ ++ KG V  + +FGAFV   G  DGL+
Sbjct: 187 DEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFGAFVDLGGI-DGLL 245

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           HI+ +S ER+   S++V     + V +L  D ++ KI L +K   Q  G P
Sbjct: 246 HITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKKIALGLK---QKEGNP 293



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ I +G+V  + ++GAFV      DGL+H+S +S T +++  S+++++G  V  K+L  
Sbjct: 390 VDTIVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSV 449

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L +K +D++
Sbjct: 450 DQERRRIALGLKQLDED 466


>gi|170749398|ref|YP_001755658.1| RNA-binding S1 domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655920|gb|ACB24975.1| RNA binding S1 domain protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 772

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHIS ++  R+A  ++VV+ G+ V V +L+ D  R +
Sbjct: 655 EGVVTNVAAFGAFVDIGVHQDGLVHISAMARRRIASPTEVVRIGEVVRVLVLNVDVPRKR 714

Query: 683 IKLSMKVVDQ-NTGKP 697
           I LSM++ D    G+P
Sbjct: 715 IALSMRLDDPVEPGQP 730


>gi|289665857|ref|ZP_06487438.1| transcription-related protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 787

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSESFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTCRLSD 727


>gi|15674934|ref|NP_269108.1| 30S ribosomal protein S1 [Streptococcus pyogenes M1 GAS]
 gi|19745977|ref|NP_607113.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS8232]
 gi|50914078|ref|YP_060050.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10394]
 gi|71903360|ref|YP_280163.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS6180]
 gi|71910528|ref|YP_282078.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS5005]
 gi|94988402|ref|YP_596503.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS9429]
 gi|94990283|ref|YP_598383.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10270]
 gi|94992284|ref|YP_600383.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS2096]
 gi|94994205|ref|YP_602303.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10750]
 gi|306827494|ref|ZP_07460777.1| 30S ribosomal protein S1 [Streptococcus pyogenes ATCC 10782]
 gi|13622077|gb|AAK33829.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes M1 GAS]
 gi|19748138|gb|AAL97612.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes MGAS8232]
 gi|50903152|gb|AAT86867.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10394]
 gi|71802455|gb|AAX71808.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS6180]
 gi|71853310|gb|AAZ51333.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS5005]
 gi|94541910|gb|ABF31959.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS9429]
 gi|94543791|gb|ABF33839.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10270]
 gi|94545792|gb|ABF35839.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS2096]
 gi|94547713|gb|ABF37759.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10750]
 gi|304430292|gb|EFM33318.1| 30S ribosomal protein S1 [Streptococcus pyogenes ATCC 10782]
          Length = 401

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           +  G V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  
Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 255 GRVSLSLK 262


>gi|258616519|ref|ZP_05714289.1| 30S ribosomal protein S1 [Enterococcus faecium DO]
 gi|260559045|ref|ZP_05831231.1| ribosomal protein S1 [Enterococcus faecium C68]
 gi|293556738|ref|ZP_06675301.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
 gi|293563396|ref|ZP_06677845.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
 gi|293568054|ref|ZP_06679392.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
 gi|294614847|ref|ZP_06694742.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
 gi|294618678|ref|ZP_06698212.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
 gi|294621936|ref|ZP_06701084.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
 gi|314942007|ref|ZP_07848868.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
 gi|314991835|ref|ZP_07857293.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
 gi|314995876|ref|ZP_07860963.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
 gi|260074802|gb|EEW63118.1| ribosomal protein S1 [Enterococcus faecium C68]
 gi|291589275|gb|EFF21085.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
 gi|291592309|gb|EFF23923.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
 gi|291595061|gb|EFF26404.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
 gi|291598485|gb|EFF29554.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
 gi|291601070|gb|EFF31359.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
 gi|291604657|gb|EFF34142.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
 gi|313589980|gb|EFR68825.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
 gi|313593646|gb|EFR72491.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
 gi|313599259|gb|EFR78104.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
          Length = 409

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SDV+   D V VK+L  + ++
Sbjct: 206 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQ 264

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 265 ERVSLSIK 272



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 288 VGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 347

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 348 PEEHRIALSIKALEE 362


>gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp]
 gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp]
          Length = 239

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA           G P+ + +A +++G+ + G+  +   
Sbjct: 119 VIQADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQ-GEPVL--- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T++G
Sbjct: 175 DLDYLEDSAAETDLNVVMTNAG 196


>gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
          Length = 394

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+++SI    +   + +G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G
Sbjct: 187 ELLQSI----KAGDVIEGKVARLTNFGAFIDLGGV-DGLVHVSELSHEHVKSPEEVVSIG 241

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           DTV VK+   + D  ++ LS+K
Sbjct: 242 DTVKVKVRSVEQDSERVSLSIK 263



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V+++  FGAFV       GLVHIS++S + +    +V++ G TV VK+L  + + 
Sbjct: 282 IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEE 341

Query: 681 GKIKLSMKVVD 691
            +I LS+K  +
Sbjct: 342 ERISLSIKAAN 352



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +KI  G+V ++ D    VH  G + +G++ ISQLST  V   ++VVK GD + 
Sbjct: 11  INDIKEGDKI-TGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIG 69

Query: 671 -WVKLLDFDDRGK 682
            +V  ++ D+  +
Sbjct: 70  AYVTKIEVDEENE 82


>gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208]
 gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3]
          Length = 245

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ +GV    P++  +A I++G+ K+     +L
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAAGKLVKSGVIKTSPVTDYLAAISVGMDKEEG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  +  T SG
Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSG 196


>gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [Ruminococcus sp. 18P13]
          Length = 661

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I + + A+ +AAR       +  EV +++ G+V  +  +GAFV   G  DG+VHIS+LS 
Sbjct: 460 IKAVAKAQKDAARA---KFWETAEVGQVFTGEVKSLTSYGAFVDL-GGIDGMVHISELSW 515

Query: 655 ERVAKTSDVVKEGDT--VWVKLLDFDDRGKIKLSMKVVDQN 693
           +R+   S+VVK GD   V++K LD  +  +I L  K  + N
Sbjct: 516 KRIKHPSEVVKVGDMLEVYIKALD-PEANRISLGYKKKEDN 555



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +    VV +  FGAF       DGL+HISQ++ +RV    D++  G  V VK+++ D
Sbjct: 566 VGDVVDATVVSITQFGAFAQIMDGVDGLIHISQIANQRVDNVKDILSVGQQVQVKIVEID 625

Query: 679 -DRGKIKLSMKVV 690
            ++ +I +SM+ +
Sbjct: 626 PEKKRISISMRAL 638


>gi|270292646|ref|ZP_06198857.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
 gi|270278625|gb|EFA24471.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
          Length = 709

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D  +R 
Sbjct: 638 EGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID-TERE 696

Query: 682 KIKLSMKVVDQN 693
           K+ LS+   D+ 
Sbjct: 697 KVNLSLLAPDET 708


>gi|332524026|ref|ZP_08400278.1| putative ribosomal protein S1 [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315290|gb|EGJ28275.1| putative ribosomal protein S1 [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 406

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           +  G V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  
Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 255 GRVSLSLK 262


>gi|309774609|ref|ZP_07669634.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917640|gb|EFP63355.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 715

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS++S  RV+  S++V  GD   VWV  +D +++ 
Sbjct: 647 EGVVRNVVDFGAFVDIGLHEDGLVHISKMSRHRVSHPSELVSVGDIVKVWVYHID-EEKQ 705

Query: 682 KIKLSM 687
           K++LS+
Sbjct: 706 KVQLSL 711


>gi|289669048|ref|ZP_06490123.1| transcription-related protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 787

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSESFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTCRLSD 727


>gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
 gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
          Length = 260

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 26/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGTQR 371
           R DGR  + +R ++   G  Q   GS L   G+T+ +   ++     E  V     G+ +
Sbjct: 4   RADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASV-----ELGVPGWRRGSGQ 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E SR  +   +  G      RL  R++   +   A    T+ I  
Sbjct: 59  GWLTAEYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL DA              PIS  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTASITGAYVALCDAVTYLGAAGKLTDPQPISCAIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDTG 198


>gi|160941601|ref|ZP_02088932.1| hypothetical protein CLOBOL_06501 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435495|gb|EDP13262.1| hypothetical protein CLOBOL_06501 [Clostridium bolteae ATCC
           BAA-613]
          Length = 715

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHISQ++ + +    + V  GD V VK+L  D  +
Sbjct: 645 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDKYIKHPLEAVSVGDIVDVKILSVDLAK 704

Query: 681 GKIKLSMKVV 690
            +I L+MK V
Sbjct: 705 KRISLTMKGV 714


>gi|139473926|ref|YP_001128642.1| 30S ribosomal protein S1 [Streptococcus pyogenes str. Manfredo]
 gi|134272173|emb|CAM30418.1| putative 30S ribosomal protein S1 [Streptococcus pyogenes str.
           Manfredo]
          Length = 401

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352


>gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379]
          Length = 723

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ IR I D+ E   + +G V  V  FGAFV     +DGLVHIS L+   V    D V+ 
Sbjct: 637 RDDIRKIEDLRE-GMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQA 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V VK+L  D  R +I LS++
Sbjct: 696 GQLVRVKVLSADPKRKRISLSIR 718


>gi|256829796|ref|YP_003158524.1| RNA binding S1 domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578972|gb|ACU90108.1| RNA binding S1 domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 472

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW--VKLLDFDDRG 681
           G+VVK+MDFGAFV      +GLVH+S++S  +R+ K  DVV+ GD V   VK +D + + 
Sbjct: 286 GKVVKLMDFGAFVEIAPGIEGLVHVSEMSYAKRINKPGDVVQVGDMVAAVVKQIDVEKQ- 344

Query: 682 KIKLSMK 688
           +I LSM+
Sbjct: 345 RISLSMR 351



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A+     +++D      I +G V ++  FGAFV      +GLVHIS+++  R+    ++
Sbjct: 179 QASASFFETVSD----GDIVEGTVTRLAAFGAFVELVPGVEGLVHISEIAWARIQSPEEI 234

Query: 664 VKEGDTVWVKLL 675
           +  GD V VK L
Sbjct: 235 LSVGDKVRVKYL 246


>gi|114778276|ref|ZP_01453135.1| probable transcriptional accessory protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551378|gb|EAU53934.1| probable transcriptional accessory protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 825

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++ + D+ E   I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK G+ 
Sbjct: 655 VKELRDLRE-GMILEGVVTNVANFGAFVDIGVHQDGLVHISALTHQFIDDPRKVVKTGEV 713

Query: 670 VWVKLLDFDDRGK-IKLSMKVVD 691
           V VK+L+ D R K I L+M++ D
Sbjct: 714 VQVKVLEVDARRKRISLTMRMDD 736


>gi|111219982|ref|YP_710776.1| putative transcriptional accessory protein [Frankia alni ACN14a]
 gi|111147514|emb|CAJ59167.1| Putative transcriptional accessory protein [Frankia alni ACN14a]
          Length = 895

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVH+S +S   V+   +V K GD V VK+LD D  R +
Sbjct: 666 EGTVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVTVKVLDVDIPRKR 725

Query: 683 IKLSMKVVDQ 692
           I L++++ D+
Sbjct: 726 ISLTLRLDDE 735


>gi|323486378|ref|ZP_08091703.1| hypothetical protein HMPREF9474_03454 [Clostridium symbiosum
           WAL-14163]
 gi|323694998|ref|ZP_08109145.1| YhgF [Clostridium symbiosum WAL-14673]
 gi|323400360|gb|EGA92733.1| hypothetical protein HMPREF9474_03454 [Clostridium symbiosum
           WAL-14163]
 gi|323500942|gb|EGB16857.1| YhgF [Clostridium symbiosum WAL-14673]
          Length = 713

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHISQ++   +    + V  GD V VK+L  D  +
Sbjct: 645 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHPLEAVSVGDIVEVKVLGVDLAK 704

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 705 KRISLTMKL 713


>gi|319892466|ref|YP_004149341.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 394

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+++SI    +   + +G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G
Sbjct: 187 ELLQSI----KAGDVIEGKVARLTNFGAFIDLGGV-DGLVHVSELSHEHVKSPEEVVSIG 241

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           DTV VK+   + D  ++ LS+K
Sbjct: 242 DTVKVKVRSVEQDSERVSLSIK 263



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V+++  FGAFV       GLVHIS++S + +    +V++ G TV VK+L  + + 
Sbjct: 282 IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEE 341

Query: 681 GKIKLSMKVVD 691
            +I LS+K  +
Sbjct: 342 ERISLSIKAAN 352



 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +KI  G+V ++ D    VH  G + +G++ ISQLST  V   ++VVK GD + 
Sbjct: 11  INDIKEGDKI-TGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIG 69

Query: 671 -WVKLLDFDDRGK 682
            +V  ++ D+  +
Sbjct: 70  AYVTKIEVDEENE 82


>gi|220931888|ref|YP_002508796.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
           orenii H 168]
 gi|219993198|gb|ACL69801.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
           orenii H 168]
          Length = 678

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG+V K++DFGAFV   G  +GL+HIS++S  R+   S+V++EG  + VK+L  + +
Sbjct: 480 QVVKGKVTKIVDFGAFVDLGGI-EGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKE 538

Query: 680 RGKIKLSMK 688
             +I L +K
Sbjct: 539 EERISLGLK 547



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 6/83 (7%)

Query: 621 KIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           K Y+G+VV     K++DFGAF+      +GL+HISQLS   V    +VV  G+ +  +++
Sbjct: 560 KHYEGEVVSGTITKIVDFGAFMEIENGIEGLIHISQLSHRHVKTPDEVVSVGEEIKAEII 619

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           + D ++ ++ LS+K +++    P
Sbjct: 620 NIDPEQKRVGLSIKALEEQPETP 642


>gi|294659326|ref|XP_461694.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
 gi|199433877|emb|CAG90142.2| DEHA2G03410p [Debaryomyces hansenii]
          Length = 1716

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 601  AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVA 658
            +EI     +++   D+ EV +I++G V +V DFGAF+   G  +  GL H SQ+S   V 
Sbjct: 1228 SEINGELNVLKKFEDL-EVGEIFEGSVRRVTDFGAFIKLDGTVNISGLCHHSQISDNDVE 1286

Query: 659  KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              S +  EGD V VK+L  D ++ ++ L MK
Sbjct: 1287 NVSSLFGEGDRVKVKILAIDQEKKQLSLGMK 1317


>gi|260589442|ref|ZP_05855355.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
 gi|260540187|gb|EEX20756.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
          Length = 250

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           RS  D  +V  I +G V  +  +GAF+       GLVH+SQ+S +R+     V+  GDTV
Sbjct: 138 RSKIDDIKVGSIVEGTVESLQTYGAFIDLGDGISGLVHVSQISEKRIKSPKAVLSIGDTV 197

Query: 671 WVKLLDFDDRGKIKLSMKVVD 691
             K++  +D GKI LSMK ++
Sbjct: 198 KAKVIKNED-GKISLSMKALN 217


>gi|66768285|ref|YP_243047.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573617|gb|AAY49027.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 787

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTRRLSD 727


>gi|21231593|ref|NP_637510.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113282|gb|AAM41434.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 787

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTRRLSD 727


>gi|30022942|ref|NP_834573.1| general stress protein 13 [Bacillus cereus ATCC 14579]
 gi|75761837|ref|ZP_00741767.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903399|ref|ZP_04067528.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
 gi|228910735|ref|ZP_04074545.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|228923634|ref|ZP_04086913.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228942063|ref|ZP_04104604.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955163|ref|ZP_04117173.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228968005|ref|ZP_04129013.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228974993|ref|ZP_04135553.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981584|ref|ZP_04141880.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|229048593|ref|ZP_04194151.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|229072384|ref|ZP_04205587.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|229082146|ref|ZP_04214611.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|229112343|ref|ZP_04241881.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|229130160|ref|ZP_04259120.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|229147452|ref|ZP_04275800.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|229181198|ref|ZP_04308529.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|229193166|ref|ZP_04320118.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
 gi|29898501|gb|AAP11774.1| S1-type RNA-binding domain [Bacillus cereus ATCC 14579]
 gi|74490670|gb|EAO53956.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228590286|gb|EEK48153.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
 gi|228602252|gb|EEK59742.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|228635997|gb|EEK92479.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|228653274|gb|EEL09152.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|228670991|gb|EEL26297.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|228701138|gb|EEL53659.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|228710707|gb|EEL62679.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|228722712|gb|EEL74099.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|228778069|gb|EEM26340.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|228784698|gb|EEM32717.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228791676|gb|EEM39270.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228804504|gb|EEM51113.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817579|gb|EEM63663.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228835995|gb|EEM81357.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848907|gb|EEM93751.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|228856235|gb|EEN00766.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
          Length = 119

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 18  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 78  SLSLKAAKRKQGRILI 93


>gi|228993620|ref|ZP_04153527.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228999658|ref|ZP_04159234.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|229007217|ref|ZP_04164818.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228753971|gb|EEM03408.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228760020|gb|EEM08990.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|228766049|gb|EEM14696.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 138

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG+V  + D+GAFV       GLVHIS+++   V    D +K GD V VK+L  D+  
Sbjct: 34  VVKGKVTGIQDYGAFVALDQETQGLVHISEITNGYVKDIHDFLKVGDIVEVKVLSIDEEH 93

Query: 682 -KIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ IV
Sbjct: 94  RKMSLSLKAAKRKQGRIIV 112


>gi|224825246|ref|ZP_03698352.1| RNA binding S1 domain protein [Lutiella nitroferrum 2002]
 gi|224602917|gb|EEG09094.1| RNA binding S1 domain protein [Lutiella nitroferrum 2002]
          Length = 767

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVHIS LS + +     VVK GD V VK+ + D  R
Sbjct: 654 VLEGVVTNVTNFGAFVDIGVHQDGLVHISALSNKFIDDPRKVVKAGDVVKVKVQEVDVKR 713

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 714 RRIALTMRLDDE 725


>gi|88861076|ref|ZP_01135711.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Pseudoalteromonas
           tunicata D2]
 gi|88817004|gb|EAR26824.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Pseudoalteromonas
           tunicata D2]
          Length = 772

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+ +   I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK 
Sbjct: 637 KEGVEKVSDL-KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKA 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+++ D  R +I  +M++ D+
Sbjct: 696 GDIVKVKVVEVDAARNRISFTMRLNDE 722


>gi|284007586|emb|CBA73155.1| 30S ribosomal protein S1 [Arsenophonus nasoniae]
          Length = 569

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD DR +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRDRTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|306825063|ref|ZP_07458405.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432499|gb|EFM35473.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 400

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G  V VK+LD + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
 gi|228269971|gb|EEK11451.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
          Length = 393

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G+V+++ +FGAFV       GLVHIS+++ + +   S+V++ G  V VK+L  D+
Sbjct: 280 NDVIEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDE 339

Query: 680 RG-KIKLSMK 688
              +I LS+K
Sbjct: 340 ENERISLSIK 349



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  G  V VK+   + D 
Sbjct: 197 VIKGKVARLTNFGAFVDIGGV-DGLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDT 255

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 256 ERISLSIK 263



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  GA+ +G++ ISQLST  +   S+++ EGD + 
Sbjct: 11  INDIKEGDKV-TGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIE 69

Query: 671 -WVKLLDFDDRGK 682
            +V  ++ D+  +
Sbjct: 70  AYVTKIEIDEENE 82


>gi|224112036|ref|XP_002316061.1| predicted protein [Populus trichocarpa]
 gi|222865101|gb|EEF02232.1| predicted protein [Populus trichocarpa]
          Length = 412

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  S V++ GDT+ V +L  D
Sbjct: 261 IGSVVTGTVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDISTVLQPGDTLKVMILSHD 319

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 320 RERGRVSLSTKKLEPTPG 337


>gi|210608535|ref|ZP_03287908.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787]
 gi|210152986|gb|EEA83992.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787]
          Length = 222

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G V  +  +GAF+       GLVH+SQ+  +R+   +DV+K G+ V VK++  
Sbjct: 119 EVGSVLTGTVETLQTYGAFIRLENGLSGLVHVSQICEKRIKTPADVLKTGEEVNVKVIGI 178

Query: 678 DDRGKIKLSMKVV 690
            D GKI LS+K +
Sbjct: 179 KD-GKISLSIKAL 190


>gi|118479994|ref|YP_897145.1| general stress protein 13 [Bacillus thuringiensis str. Al Hakam]
 gi|228917529|ref|ZP_04081074.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929927|ref|ZP_04092941.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936189|ref|ZP_04098989.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948623|ref|ZP_04110901.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228988145|ref|ZP_04148243.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229032543|ref|ZP_04188508.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
 gi|229093998|ref|ZP_04225085.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|229124443|ref|ZP_04253630.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
 gi|229158502|ref|ZP_04286562.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|229163882|ref|ZP_04291822.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|229187141|ref|ZP_04314287.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|118419219|gb|ABK87638.1| general stress protein 13 [Bacillus thuringiensis str. Al Hakam]
 gi|228596310|gb|EEK53984.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|228619503|gb|EEK76389.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|228624938|gb|EEK81705.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|228658991|gb|EEL14644.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
 gi|228689382|gb|EEL43198.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|228728728|gb|EEL79739.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
 gi|228771556|gb|EEM20024.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228810930|gb|EEM57273.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823436|gb|EEM69268.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829724|gb|EEM75347.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842096|gb|EEM87198.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 119

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 18  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 78  SLSLKAAKRKQGRILI 93


>gi|225387171|ref|ZP_03756935.1| hypothetical protein CLOSTASPAR_00923 [Clostridium asparagiforme
           DSM 15981]
 gi|225046719|gb|EEG56965.1| hypothetical protein CLOSTASPAR_00923 [Clostridium asparagiforme
           DSM 15981]
          Length = 715

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM R I  TDV ++  +  G V+K     V+DFGAFV     +DGLVHISQ++   +   
Sbjct: 624 EMPRPILRTDVMDMKDLKPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHP 683

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            + V  GD V VK+L  D  + +I L+MK
Sbjct: 684 LEAVSVGDVVDVKVLGVDLAKNRISLTMK 712


>gi|192289017|ref|YP_001989622.1| RNA binding S1 domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192282766|gb|ACE99146.1| RNA binding S1 domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 777

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 20/152 (13%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA------- 606
           +I+A     I+ +IG   K+++G+  Q  A    D+   +   S  L E+E         
Sbjct: 579 KILAATKSDIKALIGQT-KMLQGLKPQAFA----DEKFGIPTVSDILKELEKPGRDPRPE 633

Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                 +E +  ITD+ +   I +  +  V  FGAF      +DGL+HIS +S  R+   
Sbjct: 634 FKTATFQEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDP 692

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            +VVK G  V VK+L+ D  R +I L++++ D
Sbjct: 693 REVVKPGQVVKVKVLEVDVPRNRIGLTLRMSD 724


>gi|323498283|ref|ZP_08103285.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
 gi|323316711|gb|EGA69720.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
          Length = 556

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|39933661|ref|NP_945937.1| RNA binding S1 [Rhodopseudomonas palustris CGA009]
 gi|39647507|emb|CAE26028.1| transcriptional accessory protein [Rhodopseudomonas palustris
           CGA009]
          Length = 778

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 20/152 (13%)

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA------- 606
           +I+A     I+ +IG   K+++G+  Q  A    D+   +   S  L E+E         
Sbjct: 579 KILAATKSDIKALIGQT-KMLQGLKPQAFA----DEKFGIPTVSDILKELEKPGRDPRPE 633

Query: 607 ------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                 +E +  ITD+ +   I +  +  V  FGAF      +DGL+HIS +S  R+   
Sbjct: 634 FKTATFQEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDP 692

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            +VVK G  V VK+L+ D  R +I L++++ D
Sbjct: 693 REVVKPGQVVKVKVLEVDVPRNRIGLTLRMSD 724


>gi|91976666|ref|YP_569325.1| RNA binding S1 [Rhodopseudomonas palustris BisB5]
 gi|91683122|gb|ABE39424.1| RNA binding S1 [Rhodopseudomonas palustris BisB5]
          Length = 798

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ITD+ +   I +  +  V  FGAF      +DGL+HIS +S  R+    +VVK 
Sbjct: 663 QEGVEKITDL-KPGMILEATITNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVKP 721

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V VK+L+ D  R +I L++++ D
Sbjct: 722 GQVVKVKVLEVDVPRNRIGLTLRLAD 747


>gi|312114916|ref|YP_004012512.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220045|gb|ADP71413.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 778

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+ +   + +G V  V  FGAF+     +DGL H+S LS   V    DVVK 
Sbjct: 642 QEGVEKISDL-KPGMVLEGVVTNVAAFGAFIDIGVHQDGLAHVSALSKTFVKDPRDVVKP 700

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+L+ D  R +I L++++ D
Sbjct: 701 GDVVRVKVLEVDAPRKRISLTLRLDD 726


>gi|188991422|ref|YP_001903432.1| Putative RNA-binding protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733182|emb|CAP51380.1| Putative RNA-binding protein [Xanthomonas campestris pv.
           campestris]
          Length = 787

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTRRLSD 727


>gi|30250132|ref|NP_842202.1| S1 RNA-binding domain-containing protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30139239|emb|CAD86109.1| S1 RNA binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 801

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I SITD+ +   I +G V  V  FGAF+     +DGLVH+S L+ + +     +VK 
Sbjct: 664 QEGIESITDL-QPGMILEGVVTNVAAFGAFIDIGVHQDGLVHVSALANKFIKDPHQIVKP 722

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           G  V V++L  D  R +I L+M++ D
Sbjct: 723 GQVVKVRVLTVDAVRQRISLTMRIDD 748


>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
          Length = 246

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+ +R+DGR    +R I   +G+  +  GS+   +G+T+ +  V  G  E       
Sbjct: 6   LLSDQGLRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAV-YGPHE------- 57

Query: 366 LSGTQRNDFMMHYNFLPCATGEVS-RMGAPSRREIGHGRLARRAIH-----PVLPQTAQF 419
           + G+ ++  +    F+ C     +  MG   RR  G  +    + H         +T  +
Sbjct: 58  IRGS-KSKALHDKAFVNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELY 116

Query: 420 PYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           P + + I  E+ ++DG +  A V  + +AL+DAGVP+   V      LVKD
Sbjct: 117 PRSQIDIFVEVLQADGGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKD 167


>gi|304309783|ref|YP_003809381.1| predicted transcriptional accessory protein [gamma proteobacterium
           HdN1]
 gi|301795516|emb|CBL43714.1| predicted transcriptional accessory protein [gamma proteobacterium
           HdN1]
          Length = 787

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 8/82 (9%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R +
Sbjct: 653 EGCVTNVTNFGAFVDIGVHQDGLVHISVLSDKFVKDPHEVVKAGDIVKVKVVEIDIPRKR 712

Query: 683 IKLSMK-------VVDQNTGKP 697
           I LSM+       V   N G P
Sbjct: 713 IGLSMRMDEPVGQVTTGNKGAP 734


>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 245

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R DGR  + +R +    G      GS L   G+T+  V+ T    E        
Sbjct: 3   MTEAFLRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTR--VMCTASAEEGVPRFKKD 60

Query: 367 SGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           SG         Y  LP AT +     S  G    R     RL  R++   +  TA    T
Sbjct: 61  SG--EGWLTAEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENT 118

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           +++  ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G+V    
Sbjct: 119 IQLDCDVLQADGGTRTASITGAYVALADAIGYLKEQGVVPGEPLLAPVAAVSVGIV---- 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D  +  D+  +ED    +D  V  TDSG
Sbjct: 175 DGRVCLDLPYEEDSRAEVDLNVVMTDSG 202


>gi|229153088|ref|ZP_04281268.1| RNA binding S1 domain protein [Bacillus cereus m1550]
 gi|228630354|gb|EEK87003.1| RNA binding S1 domain protein [Bacillus cereus m1550]
          Length = 119

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 18  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 78  SLSLKAAKRKQGRILI 93


>gi|42784085|ref|NP_981332.1| general stress protein 13 [Bacillus cereus ATCC 10987]
 gi|206976489|ref|ZP_03237396.1| general stress protein 13 [Bacillus cereus H3081.97]
 gi|217962367|ref|YP_002340939.1| general stress protein 13 [Bacillus cereus AH187]
 gi|222098354|ref|YP_002532412.1| general stress protein 13 [Bacillus cereus Q1]
 gi|42740016|gb|AAS43940.1| general stress protein 13 [Bacillus cereus ATCC 10987]
 gi|206745413|gb|EDZ56813.1| general stress protein 13 [Bacillus cereus H3081.97]
 gi|217068117|gb|ACJ82367.1| general stress protein 13 [Bacillus cereus AH187]
 gi|221242413|gb|ACM15123.1| general stress protein 13 [Bacillus cereus Q1]
 gi|324328780|gb|ADY24040.1| general stress protein 13 [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 114

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 13  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 72

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 73  SLSLKAAKRKQGRILI 88


>gi|229159409|ref|ZP_04287429.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus R309803]
 gi|228624076|gb|EEK80882.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus R309803]
          Length = 722

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V    D+V  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSTQYVKHPLDIVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|119484685|ref|ZP_01619167.1| RNA binding S1 [Lyngbya sp. PCC 8106]
 gi|119457503|gb|EAW38627.1| RNA binding S1 [Lyngbya sp. PCC 8106]
          Length = 716

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I+ I+D+ E  ++ +G V  V++FGAFV     +DGLVHISQL+ + V   +  VK 
Sbjct: 634 KEGIKEISDLKEGMEL-EGIVTNVVNFGAFVDIGVHQDGLVHISQLADQFVDDPNQFVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKV 689
           G  V V++L+  ++ K I LSMK+
Sbjct: 693 GQVVKVRVLEVKEKLKRIGLSMKL 716


>gi|258592125|emb|CBE68430.1| 30S ribosomal subunit protein S1 [NC10 bacterium 'Dutch sediment']
          Length = 577

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G+V+ + D+GAFV      +GLVHIS++S T+RV   S VV  GD++ V +LD D   K
Sbjct: 304 RGKVISLTDYGAFVELADGIEGLVHISEMSWTQRVKHPSKVVSVGDSIEVVVLDVDKVNK 363

Query: 683 -IKLSMKVVDQN 693
            I L ++ ++ N
Sbjct: 364 RISLGLRQIEPN 375



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           K +VV++ DFGAFV      +GL+HIS+LS ERVAK  DVV     + +K++  D +  K
Sbjct: 479 KAKVVRLTDFGAFVELEDGVEGLLHISELSHERVAKPEDVVSIDQELSLKIIKLDANERK 538

Query: 683 IKLSMK 688
           + LS++
Sbjct: 539 LGLSLR 544



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  KI +G+V  + ++GAF+   G  DGL+HI+ +S  RV   S++   GD + V +L F
Sbjct: 213 EEGKIIRGKVKNITEYGAFIDLGGL-DGLLHITDMSWGRVGHPSELFTVGDEIEVVVLKF 271

Query: 678 D 678
           D
Sbjct: 272 D 272



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D D   K  S  L +IE    +  SI +   V    +G V  + DFGAFV      D
Sbjct: 354 VVLDVDKVNKRISLGLRQIEPNPWL--SIEESYPVGMRVEGTVRNLTDFGAFVELNDGID 411

Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           GL+H+S +S T+RV   S+V+K GD V   +L  D    +I L +K
Sbjct: 412 GLIHVSDMSWTKRVRHPSEVLKRGDKVEAVVLHTDKANRRISLGLK 457


>gi|299822367|ref|ZP_07054253.1| YhgF like protein [Listeria grayi DSM 20601]
 gi|299815896|gb|EFI83134.1| YhgF like protein [Listeria grayi DSM 20601]
          Length = 726

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + +    DVV  GD  TVWV+ +D  ++ 
Sbjct: 654 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFIKNPMDVVSVGDIVTVWVEEVDL-NKN 712

Query: 682 KIKLS 686
           +I L+
Sbjct: 713 RIALT 717


>gi|297564598|ref|YP_003683570.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM
           9946]
 gi|296849047|gb|ADH62062.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946]
          Length = 598

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +GQVV+V +FG FV   G  DGLVH S+++  R     +V+++G TV  K+L  D +R
Sbjct: 258 VVEGQVVEVTEFGVFVALGGV-DGLVHRSEITWGRFTHPKEVIQKGQTVRAKVLSVDPER 316

Query: 681 GKIKLSMKVV 690
            ++ LS+K +
Sbjct: 317 ERVNLSIKAL 326



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG+V  + DFG FV      +GL+HIS+L   RV K SD+ K+GD V   +L+ D    +
Sbjct: 432 KGKVTGLTDFGVFVEIEPGIEGLIHISELDYSRVEKPSDLFKKGDEVEAVILNIDPVEQR 491

Query: 683 IKLSMK 688
           I LS K
Sbjct: 492 ISLSRK 497



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +G+VV +  FGAFV      +GL+HIS+LS T+R    S+VVKEG  V   +L  D
Sbjct: 345 QGKVVGLTPFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGQEVEAVVLRID 400


>gi|113679482|ref|NP_001038817.1| exosome complex exonuclease RRP46 isoform 1 [Danio rerio]
 gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
 gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
          Length = 218

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 33/214 (15%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE---DEQYVDSLSGTQRND 373
           R    +R+  ++  LL R  GSS F++GDT +I+    G  E    ++  D         
Sbjct: 5   RSCPVLREYGSEQSLLSRPDGSSTFVQGDT-SILAGVYGPAEVKVSKEIYDR-------- 55

Query: 374 FMMHYNFLPCATGEV---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                     AT EV    +MG PS RE    +  R      L  T     +L ++ ++ 
Sbjct: 56  ----------ATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVV 105

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
             DGS     +  + +ALMDAG+P+S+    +   + K+G    I++D +  ++ +    
Sbjct: 106 HDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQ---IITDPTARQEKVSRAL 162

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
              A  DS    + M    G  S    V  LQQ 
Sbjct: 163 LTFA-IDSNERNVLMSSTTGSFS----VQELQQC 191


>gi|256371862|ref|YP_003109686.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 427

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           SL+     R+  +      ++ ++  G+V K++ FG FV      +GLVHIS+++   V 
Sbjct: 289 SLSLKATQRDPWQEFASAHKIGELVYGRVTKIVPFGCFVQVAPGIEGLVHISEMALHHVD 348

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
               VV  G+ +WVK++D D  R +I LS++
Sbjct: 349 LPEQVVSVGEELWVKIIDLDPGRRRISLSIR 379



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ KG V  ++ FG FV   G  DGLVH+S+LS   V   S VV  GD V V +L+ D 
Sbjct: 225 GEVRKGVVSSIVHFGVFVDL-GGMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLVLEVDQ 283

Query: 679 DRGKIKLSMKVVDQN 693
           +  +I LS+K   ++
Sbjct: 284 EHERISLSLKATQRD 298


>gi|210615657|ref|ZP_03290703.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787]
 gi|210150200|gb|EEA81209.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787]
          Length = 361

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V K   G+V ++ DFGAFV      D L+H+SQ+S   V K SD +  G  +  K++D +
Sbjct: 276 VGKEVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDALSVGQEITAKVVDLN 335

Query: 679 D-RGKIKLSMKVV 690
           +   KI LSMK +
Sbjct: 336 EAEKKISLSMKAL 348



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  V DFGAF+   G  DGL+HIS++S  RV     V + GDTV V + D 
Sbjct: 192 KVGDVVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDTVKVLVKDI 250

Query: 678 DDRGKIKLSMKVVDQN 693
           +D  K+ LS+K  + N
Sbjct: 251 NDT-KVALSLKFPETN 265


>gi|311086046|gb|ADP66128.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 558

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 23/201 (11%)

Query: 504 QMDMKIGGISENI--MVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRV-E 554
           Q+D+ +  I +     +++ ++AKR    ++ E +   SE+ + +      G FT  + +
Sbjct: 67  QIDVALDAIEDGFGETLLSREKAKRHEAWLILEKAHEKSETVIGIINGKVKGGFTVELND 126

Query: 555 IMAIPPDQ------IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           I A  P        +R+ I + GK +   V +   K N      V ++  ++ E E + E
Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAE 181

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD
Sbjct: 182 RDQLLENLQEGMHV-KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGD 239

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            + +K+L FD +R ++ L +K
Sbjct: 240 EINIKILKFDRERTRVSLGLK 260


>gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
 gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
          Length = 251

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 22/254 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   VSR  A  +   R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+DA           PI+   A I++G+  DG     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITNFCAAISVGIGPDGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T SG +  +Q   + G  + + +   L  A+     ++ +  +
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232

Query: 538 VLSESRLQLGEFTP 551
           VL  +  ++G+  P
Sbjct: 233 VLGATADKVGKEYP 246


>gi|224533971|ref|ZP_03674555.1| ribosomal protein S1 [Borrelia burgdorferi CA-11.2a]
 gi|224512807|gb|EEF83174.1| ribosomal protein S1 [Borrelia burgdorferi CA-11.2a]
          Length = 551

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTV 670
           S+ D  +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V
Sbjct: 264 SVDDKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQIV 323

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK+L+ D +  KI L +K +++N
Sbjct: 324 EVKILEIDKENQKISLGIKQINEN 347



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|167628523|ref|YP_001679022.1| hypothetical protein HM1_0392 [Heliobacterium modesticaldum Ice1]
 gi|167591263|gb|ABZ83011.1| conserved domain protein [Heliobacterium modesticaldum Ice1]
          Length = 729

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V+DFGAFV      DGLVH+SQL+ + V    +VV  GD V V +L  D  R
Sbjct: 655 VLQGTVRNVVDFGAFVDIGIKHDGLVHVSQLADKFVRHPMEVVAVGDIVTVAVLSVDRQR 714

Query: 681 GKIKLSMKVVDQNT 694
            ++ L+M+ V Q +
Sbjct: 715 ERVGLTMRGVPQTS 728


>gi|323495049|ref|ZP_08100138.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
 gi|323310706|gb|EGA63881.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
          Length = 556

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|229917405|ref|YP_002886051.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229468834|gb|ACQ70606.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 170

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV     + GLVHIS+++   V   ++V+  G  V VK+L+ 
Sbjct: 4   EVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKVLNV 63

Query: 678 DDRGKIKLSMK 688
           ++ GKI LS+K
Sbjct: 64  ENDGKIGLSIK 74


>gi|21227909|ref|NP_633831.1| translation initiation factor IF-2 subunit alpha [Methanosarcina
           mazei Go1]
 gi|20906328|gb|AAM31503.1| protein translation initiation factor 2 subunit alpha
           [Methanosarcina mazei Go1]
          Length = 271

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 609 MIRSITD-VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVK 665
           M+R   D  PEV +     V  V DFGA+V     G R+G +HIS++    V    D V+
Sbjct: 1   MVRMGNDNWPEVGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVR 60

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           EG  +  K+L+ D  RG I LS+K V+++
Sbjct: 61  EGQKIVCKVLNVDPSRGHIDLSLKDVNEH 89


>gi|28898804|ref|NP_798409.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807023|dbj|BAC60293.1| ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
 gi|328474637|gb|EGF45442.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus 10329]
          Length = 556

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1]
 gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1]
          Length = 245

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R +       +   GS L   GDT+ I   T+    +E+    L G  + 
Sbjct: 3   RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATV----EERVPPFLKGLGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP ATG     E +R G    R +   RL  RA+  V+   A    +L +  
Sbjct: 59  WVTAEYSMLPRATGSRTIREAAR-GKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+S  +A  ++G+VK G   I  
Sbjct: 118 DVIQADGGTRTASITGAYVAMIFALNRLVEQGMLEKIPVSDFIAATSVGIVK-GRPVI-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED +  +D  V  T +G
Sbjct: 175 -DLCYAEDSVAEVDMNVVMTGTG 196


>gi|325661147|ref|ZP_08149774.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085098|ref|ZP_08334184.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472654|gb|EGC75865.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407881|gb|EGG87371.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 360

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  +++D ++   KI
Sbjct: 282 GKVARMTDFGAFVELAPGVDALLHVSQISKAHVEKPSDVLSVGQEIVARVVDLNEAEKKI 341

Query: 684 KLSMKVV 690
            LSMK +
Sbjct: 342 SLSMKAL 348



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V DFGAF+   G  DGL+HIS++S  RV     V + GD V V + D 
Sbjct: 192 KVGDTVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGDQVKVLVKDI 250

Query: 678 DDRGKIKLSMKVVDQN 693
           +D  KI LS+K  + N
Sbjct: 251 NDT-KIALSLKFPESN 265


>gi|260887148|ref|ZP_05898411.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
           ATCC 35185]
 gi|260863210|gb|EEX77710.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
           ATCC 35185]
          Length = 373

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I +G V +++++GAF+   G  DGL HIS L+  RV + SDV+  GD V V + +F
Sbjct: 190 EVGQIIRGTVKRLVEYGAFIDIGGV-DGLAHISDLAWHRVKQPSDVLSVGDEVDVYVKNF 248

Query: 678 DDRGK-IKLSMK 688
           D   K I LS+K
Sbjct: 249 DPETKRISLSVK 260



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+++K+ DFGAF+      DGL+ + +L+  R+A+  + V+ GD V VK+L  D  R +
Sbjct: 281 KGKIIKLTDFGAFMEIEPGFDGLIPMGELADRRIARADEAVQLGDIVKVKILHIDMKRKR 340

Query: 683 IKLSM 687
           I LS+
Sbjct: 341 ISLSI 345


>gi|217965005|ref|YP_002350683.1| hypothetical protein LMHCC_1728 [Listeria monocytogenes HCC23]
 gi|217334275|gb|ACK40069.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
 gi|307570435|emb|CAR83614.1| toxin expression-transcriptional accessory protein [Listeria
           monocytogenes L99]
          Length = 725

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDIVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
          Length = 239

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+DA           G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQG----VPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  TD+G
Sbjct: 175 DLDYLEDSAAETDLNVVMTDAG 196


>gi|15616919|ref|NP_240132.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681673|ref|YP_002468059.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682228|ref|YP_002468612.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471362|ref|ZP_05635361.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11387054|sp|P57395|RS1_BUCAI RecName: Full=30S ribosomal protein S1
 gi|25294429|pir||B84966 30S ribosomal protein S1 [imported] - Buchnera sp. (strain APS)
 gi|10038983|dbj|BAB13018.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621961|gb|ACL30117.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624516|gb|ACL30671.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086619|gb|ADP66700.1| 30S ribosomal protein S1 [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087202|gb|ADP67282.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087727|gb|ADP67806.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 558

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 23/201 (11%)

Query: 504 QMDMKIGGISENI--MVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRV-E 554
           Q+D+ +  I +     +++ ++AKR    ++ E +   SE+ + +      G FT  + +
Sbjct: 67  QIDVALDAIEDGFGETLLSREKAKRHEAWLILEKAHEKSETVIGIINGKVKGGFTVELND 126

Query: 555 IMAIPPDQ------IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           I A  P        +R+ I + GK +   V +   K N      V ++  ++ E E + E
Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAE 181

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD
Sbjct: 182 RDQLLENLQEGMHV-KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGD 239

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            + +K+L FD +R ++ L +K
Sbjct: 240 EINIKILKFDRERTRVSLGLK 260


>gi|309389981|gb|ADO77861.1| Tex-like protein [Halanaerobium praevalens DSM 2228]
          Length = 723

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I+KG+V  ++DFGAF+     +DGL+HIS++S   V    ++V+ G  + V++L  D  R
Sbjct: 655 IFKGKVRNIVDFGAFIDIGLKQDGLLHISEMSQMYVNDPFEIVEIGQNIDVQVLAVDQSR 714

Query: 681 GKIKLSMK 688
           G+I L++K
Sbjct: 715 GRISLTLK 722


>gi|197124120|ref|YP_002136071.1| RNA binding S1 domain protein [Anaeromyxobacter sp. K]
 gi|196173969|gb|ACG74942.1| RNA binding S1 domain protein [Anaeromyxobacter sp. K]
          Length = 537

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ G V  V D+GAFV   G  +GLVH+S+L+ +RV+K  D++  GD V V++L  D+  
Sbjct: 328 VFDGVVTSVQDYGAFVDIGGV-EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDP 386

Query: 682 K----IKLSMK 688
           K    I LS+K
Sbjct: 387 KKGERIGLSVK 397



 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +  V KV  FG FV F G R GLV  S+  T R A      K GDT+   +   D
Sbjct: 429 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGADLRRSFKVGDTLQALVSAID 487

Query: 679 DRGKIKLS 686
           ++G+I+LS
Sbjct: 488 EQGRIRLS 495


>gi|86750388|ref|YP_486884.1| RNA binding S1 [Rhodopseudomonas palustris HaA2]
 gi|86573416|gb|ABD07973.1| RNA binding S1 [Rhodopseudomonas palustris HaA2]
          Length = 799

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ITD+ +   I +  V  V  FGAF      +DGL+HIS +S  R+    +VVK 
Sbjct: 663 QEGVEKITDL-KPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVKP 721

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V VK+L+ D  R +I L++++ D
Sbjct: 722 GQVVKVKVLEVDVPRNRIGLTLRLSD 747


>gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
 gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
          Length = 242

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 37/251 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R IS Q    +   GS L   GDT  +   ++     E+    L  T + 
Sbjct: 5   RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVA----EEVPPFLQNTGQG 60

Query: 373 DFMMHYNFLPCATGE--------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                Y  LP AT +        VS   A  +R IG    A    H +  +      T+ 
Sbjct: 61  WLTAEYRMLPTATQQRQPRETLKVSGRTAEIQRLIGRSLRAALDFHKLGSR------TIT 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA--------------GVPISKPVAGIAMGLVKDG 470
           + +++ ++DGS+  A + G  +AL DA              G P+ + VA +++G+V+ G
Sbjct: 115 VDADVLQADGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVR-G 173

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           +   +L D+  +ED    +D  +   + G +  +Q   + G    + ++  L  A+ G  
Sbjct: 174 E---VLVDLCYEEDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQ 230

Query: 530 HILNEMSKVLS 540
            +L    + L+
Sbjct: 231 ELLRAQRETLN 241


>gi|78222087|ref|YP_383834.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15]
 gi|78193342|gb|ABB31109.1| SSU ribosomal protein S1P [Geobacter metallireducens GS-15]
          Length = 586

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V  + D+GAFV   G  DGL+H++ +S  R+   S+++K GD + VK+L +D +
Sbjct: 218 QVREGVVKNITDYGAFVDIGGV-DGLLHVTDMSWGRLGHPSEILKPGDKLNVKVLKYDQE 276

Query: 680 RGKIKLSMKVV 690
           +GKI L +K V
Sbjct: 277 KGKISLGLKQV 287



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V  V DFG F+      +GL+H+S+LS E+VA   +    GD +   +L  D+   KI
Sbjct: 481 GKVTSVTDFGVFLEIEEGIEGLIHVSELSREKVASPKEFTNVGDELDAVVLSVDESEKKI 540

Query: 684 KLSMK 688
            LS+K
Sbjct: 541 ALSIK 545



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL--DFDDR 680
           KG+VV + D+GAF+      +GLVH+S++S T R+   S+++  GD V   +L  D  +R
Sbjct: 306 KGKVVSLTDYGAFIALEDGVEGLVHVSEMSWTRRLRHPSEILTVGDEVETVVLGVDMGNR 365

Query: 681 GKIKLSMKVVDQN 693
            +I L +K V  N
Sbjct: 366 -RISLGLKQVQVN 377



 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +GQ+  + DFG F+      DGLVH+S +S T+R+    +V  +G TV   +L+ D
Sbjct: 393 EGQIKSITDFGVFIGIEEGIDGLVHVSDISWTKRIKHPGEVFTKGQTVQAVVLNID 448


>gi|330839082|ref|YP_004413662.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746846|gb|AEC00203.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
          Length = 378

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I +G V +++++GAF+   G  DGL HIS L+  RV + SDV+  GD V V + +F
Sbjct: 195 EVGQIIRGTVKRLVEYGAFIDIGGV-DGLAHISDLAWHRVKQPSDVLSVGDEVDVYVKNF 253

Query: 678 DDRGK-IKLSMK 688
           D   K I LS+K
Sbjct: 254 DPETKRISLSVK 265



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG+++K+ DFGAF+      DGL+ + +L+  R+A+  + V+ GD V VK+L  D  R +
Sbjct: 286 KGKIIKLTDFGAFMEIEPGFDGLIPMGELADRRIARADEAVQLGDIVKVKILHIDMKRKR 345

Query: 683 IKLSM 687
           I LS+
Sbjct: 346 ISLSI 350


>gi|328947116|ref|YP_004364453.1| Tex-like protein [Treponema succinifaciens DSM 2489]
 gi|328447440|gb|AEB13156.1| Tex-like protein [Treponema succinifaciens DSM 2489]
          Length = 784

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G++  V+DFGAFV       GL+HIS+LS   V+   DV+K GD     ++D D DR +I
Sbjct: 656 GKIKNVVDFGAFVDIGLHETGLIHISELSDSFVSDPMDVIKVGDVKEFTIIDLDTDRKRI 715

Query: 684 KLSMK 688
            LS+K
Sbjct: 716 SLSLK 720


>gi|255528150|ref|ZP_05394977.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|255508163|gb|EET84576.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
          Length = 725

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V DFGAFV     +DGLVHISQLS + V    DVV+ GD V V +++ D+ R +I
Sbjct: 655 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVQVGDIVEVTVIEVDEKRKRI 714

Query: 684 KLSMKVV 690
            L+++ V
Sbjct: 715 ALTIEKV 721


>gi|268316851|ref|YP_003290570.1| 30S ribosomal protein S1 [Rhodothermus marinus DSM 4252]
 gi|262334385|gb|ACY48182.1| ribosomal protein S1 [Rhodothermus marinus DSM 4252]
          Length = 720

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G+V K+ +FG FV      DGLVHIS LS T R+   S+VVKEG+ + V +L+ D+ 
Sbjct: 466 VLRGKVRKITNFGVFVEIEPGIDGLVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEE 525

Query: 681 G-KIKLSMKVVDQN 693
             +I L  K V  N
Sbjct: 526 NRRISLGHKQVQTN 539



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G+VV + D+GAFV      +GLVHIS++S T+ +   S  V  G  V VK+L+ D  
Sbjct: 379 VVEGKVVSITDYGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDRE 438

Query: 681 G-KIKLSMKVVDQN 693
           G KI L MK ++ N
Sbjct: 439 GRKISLGMKQLEPN 452


>gi|229495637|ref|ZP_04389366.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406]
 gi|229317407|gb|EEN83311.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406]
          Length = 583

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+E  +   R I    E  ++ +G V  ++ FG FV   G  DGL+HI+ LS ERV+  
Sbjct: 187 AELEQQK---RDIISKLEKGQVLEGTVKNILPFGVFVDLGGV-DGLIHITDLSWERVSHP 242

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S+VV+    + V +LDFD ++ +I L +K +  N
Sbjct: 243 SEVVELDQKINVVILDFDENKTRIALGLKQLTPN 276



 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + KG+V  + D+GAFV      +GL+H+S++S  + +    D +K G+ V   +L  D +
Sbjct: 290 VLKGKVELITDYGAFVEIAPGIEGLIHVSEMSWAQHLRSAQDFLKVGEEVEAVILTLDRE 349

Query: 680 RGKIKLSMK 688
             K+ L MK
Sbjct: 350 ERKMSLGMK 358



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ +V    +FG FV      DGL+H+S LS T++V   S+V + G  + V++L+ D   
Sbjct: 378 HQAKVRNFTNFGVFVEIEEGVDGLIHLSDLSWTKKVKHPSEVTEIGAMIEVEVLEIDKEN 437

Query: 682 -KIKLSMKVVDQN 693
            ++ L  K  ++N
Sbjct: 438 RRLSLGHKQTEEN 450


>gi|167950655|ref|ZP_02537729.1| RNA binding S1 domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 130

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV     +DGLVHISQL+   V    +VVK GD V VK+++ D +R ++ LSM++ 
Sbjct: 23  NFGAFVDIGVHQDGLVHISQLADRFVKDPREVVKAGDLVKVKVMEVDLERKRVGLSMRLQ 82

Query: 691 DQNTGKP 697
           ++   +P
Sbjct: 83  ERAEREP 89


>gi|262393793|ref|YP_003285647.1| 30S ribosomal protein S1p [Vibrio sp. Ex25]
 gi|269966533|ref|ZP_06180616.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
 gi|262337387|gb|ACY51182.1| SSU ribosomal protein S1p [Vibrio sp. Ex25]
 gi|269828877|gb|EEZ83128.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
          Length = 556

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44]
 gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44]
          Length = 245

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR++  +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V+D     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|160934895|ref|ZP_02082281.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
 gi|156866348|gb|EDO59720.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
          Length = 722

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHISQ+  + +   S+V+K GD V V +L+ D  + +I
Sbjct: 654 GTVRNVIDFGAFVDIGVHQDGLVHISQICNKYIKHPSEVLKVGDIVKVWVLNADPVKKRI 713

Query: 684 KLSMK 688
            L+MK
Sbjct: 714 GLTMK 718


>gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01]
 gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01]
          Length = 238

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GDD  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDD--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|121604844|ref|YP_982173.1| RNA-binding S1 domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593813|gb|ABM37252.1| RNA binding S1 domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 778

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ E   + +G V  V  FGAF+     +DGLVH+SQLS + V    +VVK GD 
Sbjct: 647 VEDIRDLKE-GMLLEGTVSNVAAFGAFIDIGVHQDGLVHVSQLSNKFVTDAREVVKTGDI 705

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V++ + D  R +I L+MK+
Sbjct: 706 VKVRVTEVDVARKRIGLTMKL 726


>gi|325926365|ref|ZP_08187694.1| transcriptional accessory protein [Xanthomonas perforans 91-118]
 gi|325543244|gb|EGD14678.1| transcriptional accessory protein [Xanthomonas perforans 91-118]
          Length = 787

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTCRLSD 727


>gi|218710037|ref|YP_002417658.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
 gi|218323056|emb|CAV19233.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
          Length = 556

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGTEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEILVKVLKFDRERTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|220918900|ref|YP_002494204.1| RNA binding S1 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956754|gb|ACL67138.1| RNA binding S1 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 535

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ G V  V D+GAFV   G  +GLVH+S+L+ +RV+K  D++  GD V V++L  D+  
Sbjct: 326 VFDGVVTSVQDYGAFVDIGGV-EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDP 384

Query: 682 K----IKLSMK 688
           K    I LS+K
Sbjct: 385 KKGERIGLSVK 395



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +  V KV  FG FV F G R GLV  S+  T R +      K GDT+   +   D
Sbjct: 427 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGSDLRRSFKVGDTLQALVSAID 485

Query: 679 DRGKIKLS 686
           ++G+I+LS
Sbjct: 486 EQGRIRLS 493


>gi|157690845|ref|YP_001485307.1| hypothetical protein BPUM_0047 [Bacillus pumilus SAFR-032]
 gi|194017967|ref|ZP_03056574.1| S1 family RNA-binding protein [Bacillus pumilus ATCC 7061]
 gi|157679603|gb|ABV60747.1| S1 family RNA-binding protein [Bacillus pumilus SAFR-032]
 gi|194010304|gb|EDW19879.1| S1 family RNA-binding protein [Bacillus pumilus ATCC 7061]
          Length = 132

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K G+ V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEHLKVGEQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|330684832|gb|EGG96525.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 716

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V 
Sbjct: 636 SIEDLSEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 672 VKLLDFD-DRGKIKLSM 687
           V +L+ D  + K+ L+M
Sbjct: 695 VWILNIDKQKDKVSLTM 711


>gi|312134574|ref|YP_004001912.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774625|gb|ADQ04112.1| RNA binding S1 domain protein [Caldicellulosiruptor owensensis OL]
          Length = 120

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V  ++ FGAFV     + GLVHIS+++ E V      +KE  TV VK++D  + G
Sbjct: 8   ILEGIVKDIIQFGAFVELPNGKVGLVHISEVAEEYVEDIKKYLKENQTVKVKVIDVKEDG 67

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 68  KISLSIK 74


>gi|269961758|ref|ZP_06176118.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
 gi|269833541|gb|EEZ87640.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
          Length = 556

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
 gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
          Length = 566

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + I +  ++  + KG+V K+  FGAF+   G  DGL+HISQ+S +RV K  D +K G  V
Sbjct: 439 KEIENKYKIGDLVKGKVSKITTFGAFISLEGDIDGLIHISQISEDRVDKIKDHLKVGQEV 498

Query: 671 WVKLLDFDD-RGKIKLSMKVVD 691
             +++  D    +I LS+K  +
Sbjct: 499 EARVIKVDKTERRIGLSLKAAN 520



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  +I  +PP  ++  +G          +    K+N DD   V ++   L E E A +
Sbjct: 127 FLPGSQIDIVPPKDLQQFVG-------NTYDFKIVKIN-DDRKNVVLSRRELIEAERAEK 178

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             R   D  +V    KG V  + DFGAF+   G  DGL+HI+ ++  R+   S++VK G 
Sbjct: 179 RQR-FMDTIKVGSTVKGVVKNLTDFGAFIDLDGM-DGLLHITDMTWGRLGHPSELVKVGQ 236

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693
            + V +LD + ++ ++ L +K   +N
Sbjct: 237 ELDVIVLDINKEKERVSLGLKQTQKN 262



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           ++ +  KG V  +  +GAFV      DG++H+S +S T++V   S+V+K+GD +   ++D
Sbjct: 359 QIGRQVKGTVRNLTAYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVID 418

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
            D +  +I L +K ++ +  K I
Sbjct: 419 IDKQNQRISLGIKQLEGDPWKEI 441



 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG++  ++ +GAFV      +GL+H+S+LS T+R+ + SDV+  G  V   +L  + +  
Sbjct: 278 KGKITNLVPYGAFVEIEEGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQ 337

Query: 682 KIKLSMKVVDQN 693
           KI L ++ ++ N
Sbjct: 338 KISLGVRQLEPN 349


>gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 397

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G+V ++  FGAF+   GA DGL HIS+LS +RV    +V++ G  V V +L+ 
Sbjct: 208 EPGAVVTGRVNQLTPFGAFIDLGGA-DGLAHISELSWQRVNHPREVLQPGQEVQVYVLEV 266

Query: 678 D-DRGKIKLSMK 688
           D DR +I LS++
Sbjct: 267 DRDRERIGLSLR 278


>gi|21242797|ref|NP_642379.1| transcription-related protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108280|gb|AAM36915.1| transcription-related protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 786

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA----------AREMIRS 612
           I+ ++G  G  +RG+     A++  DD   V      L E+E           A +    
Sbjct: 591 IKALLG-DGSFLRGL----KAEMFTDDQFGVPTVRDILKELEKPGRDPRPEFKAAQFAEG 645

Query: 613 ITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           I D+  +    + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V
Sbjct: 646 IEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIV 705

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            VK+L+ D  R +I L+ ++ D
Sbjct: 706 KVKVLEVDVARKRIALTCRLSD 727


>gi|288960277|ref|YP_003450617.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510]
 gi|288912585|dbj|BAI74073.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510]
          Length = 784

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHISQL+   V     VVK GD V VK+L+ D  R
Sbjct: 650 MLEGVVTNVTAFGAFVDIGVHQDGLVHISQLANSFVKDPHTVVKAGDVVKVKVLEVDIPR 709

Query: 681 GKIKLSMKV 689
            ++ L+M++
Sbjct: 710 KRVALTMRM 718


>gi|225025738|ref|ZP_03714930.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC
           23834]
 gi|224941519|gb|EEG22728.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC
           23834]
          Length = 583

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD DR
Sbjct: 218 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDR 276

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 277 SRVSLGMK 284



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +LD D DR +
Sbjct: 306 GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILDIDEDRRR 365

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 366 ISLGMKQCQAN 376


>gi|78047770|ref|YP_363945.1| transcription-related protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036200|emb|CAJ23891.1| transcription-related protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 787

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTCRLSD 727


>gi|261253452|ref|ZP_05946025.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891]
 gi|260936843|gb|EEX92832.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891]
          Length = 556

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|223934222|ref|ZP_03626156.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|223897103|gb|EEF63530.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
          Length = 191

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D +  G  V VK+L+    D
Sbjct: 71  VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAAD 130

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 131 ER--VSLSIKALEE 142



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
            G  DGLVH+++LS ER       V  G+ V VK+L  D+  G++ LS+K
Sbjct: 3   LGGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLK 52


>gi|156975133|ref|YP_001446040.1| 30S ribosomal protein S1 [Vibrio harveyi ATCC BAA-1116]
 gi|156526727|gb|ABU71813.1| hypothetical protein VIBHAR_02860 [Vibrio harveyi ATCC BAA-1116]
          Length = 556

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116]
 gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3]
 gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116]
 gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3]
          Length = 240

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A   + + +  
Sbjct: 59  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GDD  +L
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDD--VL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEEG 197


>gi|56964417|ref|YP_176148.1| ribonuclease PH [Bacillus clausii KSM-K16]
 gi|61215808|sp|Q5WEM3|RNPH_BACSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56910660|dbj|BAD65187.1| ribonuclease PH [Bacillus clausii KSM-K16]
          Length = 250

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R++       +   GS L   GDT+ I   ++  R        L G  +
Sbjct: 1   MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASIENR----VPPFLRGQNK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP ATG+ +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWLAAEYSMLPRATGQRTIREAAKGKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+ A             PI+  +A I++G++ +      +
Sbjct: 117 DVIQADGGTRTASITGAYVALVLAVQKAFAEKTISAWPITDFLAAISVGILPEEG---AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T SG
Sbjct: 174 CDLCYSEDSQAKVDMNIVQTGSG 196


>gi|289167924|ref|YP_003446193.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288907491|emb|CBJ22328.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 709

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSCKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|228961152|ref|ZP_04122775.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798531|gb|EEM45521.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 119

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 18  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSVDEEHRKM 77

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 78  SLSLKAAKRKQGRILI 93


>gi|294656765|ref|XP_459081.2| DEHA2D13882p [Debaryomyces hansenii CBS767]
 gi|199431726|emb|CAG87249.2| DEHA2D13882p [Debaryomyces hansenii]
          Length = 1147

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 17/101 (16%)

Query: 612 SITDVP-EVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE---RVAKTSDVV 664
           ++ D P E   +YKG V  +  +GAF+     +    GL H+SQ+S +   R+   SDV+
Sbjct: 163 TVKDEPIEAGNVYKGYVSNITTYGAFIRLNDPKSFQSGLCHVSQISFDGRTRIQNPSDVL 222

Query: 665 KEGDTVWVKLLDFDD----------RGKIKLSMKVVDQNTG 695
           K    ++VK+L  +           R KI LSM+ +DQ TG
Sbjct: 223 KLNQEIFVKVLSIEKPTSQVGRRLPREKISLSMRGIDQATG 263


>gi|134298001|ref|YP_001111497.1| RNA-binding S1 domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134050701|gb|ABO48672.1| RNA binding S1 domain protein [Desulfotomaculum reducens MI-1]
          Length = 126

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + +FGAFV   G + GLVHIS+++   V   ++ +K  D V V+++  
Sbjct: 4   EQGSIVEGIVTGITNFGAFVELPGGQTGLVHISEVAEVYVKDINEFLKVNDKVKVRIISV 63

Query: 678 DDRGKIKLSMK 688
           D +GKI LS+K
Sbjct: 64  DPKGKIGLSIK 74


>gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1]
 gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
 gi|12230959|sp|P50597|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122256498|sp|Q02E28|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736925|sp|B7V5M5|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa In Complex With Phosphate
 gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
          Length = 239

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+DA           G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQG----VPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  TD+G
Sbjct: 175 DLDYLEDSAAETDLNVVMTDAG 196


>gi|313159683|gb|EFR59040.1| Tex-like protein N-terminal domain protein [Alistipes sp. HGB5]
          Length = 705

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + S+TD+ E      G V  +  FGAFV     +DGLVHISQL+   VA  +DVV  G  
Sbjct: 624 VHSVTDLRE-GMTLPGIVTNITAFGAFVDIGIKQDGLVHISQLADRYVASPADVVHLGQH 682

Query: 670 VWVKLLDFDD-RGKIKLSMK 688
           V V++   D  R +I LSM+
Sbjct: 683 VEVRVTGIDTVRNRIALSMR 702


>gi|239623425|ref|ZP_04666456.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522391|gb|EEQ62257.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 714

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHISQL+   +    + V  GD V VK++  D  +
Sbjct: 645 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQLTDRYIKHPLEAVSVGDVVDVKIISVDLAK 704

Query: 681 GKIKLSMK 688
            +I L+MK
Sbjct: 705 KRIALTMK 712


>gi|303254044|ref|ZP_07340161.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS455]
 gi|303260750|ref|ZP_07346709.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP-BS293]
 gi|303263108|ref|ZP_07349038.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS292]
 gi|303265028|ref|ZP_07350942.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS397]
 gi|303267475|ref|ZP_07353326.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS457]
 gi|303269841|ref|ZP_07355587.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS458]
 gi|307127588|ref|YP_003879619.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae 670-6B]
 gi|301801686|emb|CBW34391.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV200]
 gi|302598980|gb|EFL66009.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS455]
 gi|302635761|gb|EFL66266.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS292]
 gi|302638118|gb|EFL68594.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP-BS293]
 gi|302640638|gb|EFL71039.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS458]
 gi|302642981|gb|EFL73277.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS457]
 gi|302645388|gb|EFL75621.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS397]
 gi|306484650|gb|ADM91519.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae 670-6B]
 gi|332077274|gb|EGI87736.1| hypothetical protein SPAR148_0810 [Streptococcus pneumoniae
           GA17545]
          Length = 400

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSIK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|294101305|ref|YP_003553163.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
 gi|293616285|gb|ADE56439.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
          Length = 260

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D  +R DGR    +R IS Q        G+ L   GDT+ I   ++    +++    L
Sbjct: 1   MEDTLLRSDGRKFNEIRPISFQRHFTCYAEGAVLACFGDTKVICTASV----EDRVPPFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGE-VSRM---GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G+ +      Y  LP AT E  SRM   GA S R     RL  R++      +     T
Sbjct: 57  RGSGQGWISAEYAMLPRATAERTSRMTSKGAISGRSHEIQRLIGRSLRASADLSLLGERT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A + G+ +AL DA            +P+   VA +++G ++   
Sbjct: 117 IWLDCDVIQADGGTRTAAISGAFVALFDAMRCLKAQDVIEKIPVKSFVAAVSVGKIEGS- 175

Query: 472 DFIILSDISGDEDHLGHMDFKV 493
              +L D+  +ED    +D  V
Sbjct: 176 ---LLLDLCYEEDSCADVDCNV 194


>gi|110597804|ref|ZP_01386087.1| RNA binding S1 [Chlorobium ferrooxidans DSM 13031]
 gi|110340529|gb|EAT59012.1| RNA binding S1 [Chlorobium ferrooxidans DSM 13031]
          Length = 596

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           N ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 389 NSLHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFD 448

Query: 679 DRG-KIKLSMKVVDQN 693
               +I L  K ++Q+
Sbjct: 449 VHARRIALGHKQINQD 464



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV + D+GAFV      +GLVHIS++S T+ +      V  G  V   +L+ D D  
Sbjct: 306 QGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHT 365

Query: 682 KIKLSMKVVDQN 693
           K+ LSMK V+++
Sbjct: 366 KLSLSMKRVNED 377



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV     + V ++ F
Sbjct: 215 KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVGF 273

Query: 678 DDRGK-IKLSMKVVDQNTGKPI 698
           D+  K + L MK ++ +  + I
Sbjct: 274 DENTKRVSLGMKQLESHPWENI 295


>gi|313205786|ref|YP_004044963.1| SSU ribosomal protein s1p [Riemerella anatipestifer DSM 15868]
 gi|312445102|gb|ADQ81457.1| SSU ribosomal protein S1P [Riemerella anatipestifer DSM 15868]
 gi|315022816|gb|EFT35840.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM]
          Length = 593

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  +  +G F+   G  DGLVHI+ LS  RV   ++++++G TV V +LDF
Sbjct: 222 EKGQVLEGTVKNITSYGVFIDLGGV-DGLVHITDLSWSRVNHPTEILEDGQTVKVVILDF 280

Query: 678 D-DRGKIKLSMK 688
           D D+ +I+L MK
Sbjct: 281 DEDKTRIQLGMK 292



 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V  ++L  D +  
Sbjct: 313 KGKVVVLADYGAFVEVAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAQVLTLDKEER 372

Query: 682 KIKLSMKVVDQN 693
           KI L MK + ++
Sbjct: 373 KISLGMKQLSED 384


>gi|258592582|emb|CBE68891.1| RNase PH [NC10 bacterium 'Dutch sediment']
          Length = 258

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 23/200 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R +    G L+   GS L   G+T+ +   T+    +E+    L  T +
Sbjct: 14  VRSDGRKIDEIRPVKVDRGYLRHAEGSLLIEVGETRVLCTATV----EEKVPPFLRATGQ 69

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  S R     RL  R++  V+  T     T+ I  
Sbjct: 70  GWVTAEYGMLPRATKTRTPRESATGRASGRTFEIQRLIGRSLRAVIDLTRLGERTVLIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +    + G+ +A+ DA           G  +   VAGI++G V DG+   +L
Sbjct: 130 DVIQADGGTRTTAITGAFVAMADALSRLQENGQLKGPLLKDFVAGISIGYV-DGE---LL 185

Query: 477 SDISGDEDHLGHMDFKVAGT 496
            D++  ED +  +D  V  T
Sbjct: 186 LDLNYAEDSMADVDMNVVMT 205


>gi|288574247|ref|ZP_06392604.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569988|gb|EFC91545.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 717

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  V DFGAFV     +DGLVH+S+LS   V       K G TV V +LD D  R
Sbjct: 640 VLPGIVTNVTDFGAFVDVGVHQDGLVHVSRLSDRFVKDPHQAAKPGQTVEVAVLDVDLKR 699

Query: 681 GKIKLSMKVVD 691
            ++ LSMK  D
Sbjct: 700 KRLSLSMKKKD 710


>gi|291294513|ref|YP_003505911.1| RNA binding S1 domain-containing protein [Meiothermus ruber DSM
           1279]
 gi|290469472|gb|ADD26891.1| RNA binding S1 domain protein [Meiothermus ruber DSM 1279]
          Length = 558

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG+V  + DFG FV      +GL+H+S+L+ ERV K S++ K+GD V   +L  D    +
Sbjct: 391 KGKVTGLTDFGVFVEIEPGIEGLIHVSELAYERVEKPSEIFKKGDEVEAAILQIDPVEQR 450

Query: 683 IKLSMK 688
           I LS K
Sbjct: 451 ISLSRK 456



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           DFG FV   G  DGLVH S+++  R     DVV++G TV  K+L  D +R ++ LSMK +
Sbjct: 227 DFGVFVALGGV-DGLVHRSEITWGRFNHPRDVVQKGQTVKAKVLSVDTERERVNLSMKAL 285

Query: 691 DQN 693
            Q+
Sbjct: 286 TQD 288



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV +  FGAFV      +GL+HIS+LS T+R     +++KEG  V  ++L  D +  +
Sbjct: 305 GKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPGEILKEGQEVEAQVLRIDPEERR 364

Query: 683 IKLSMK 688
           + L +K
Sbjct: 365 LSLGLK 370


>gi|116333182|ref|YP_794709.1| hypothetical protein LVIS_0520 [Lactobacillus brevis ATCC 367]
 gi|116098529|gb|ABJ63678.1| RNA binding protein (S1 domain) [Lactobacillus brevis ATCC 367]
          Length = 181

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHIS++S   V    DV+  GD V VK+L  
Sbjct: 4   EVGAKVTGKVSGITNFGAFVDLGDHKTGLVHISEISDGYVKDIHDVLSVGDEVTVKVLTV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKIGLSIR 74


>gi|331084456|ref|ZP_08333558.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401319|gb|EGG80906.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 233

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           RS  D  +V  I +G V  +  +GAF+       GLVH+SQ+S +R+     V+  GDTV
Sbjct: 121 RSKIDDIKVGSIVEGTVESLQTYGAFIDLGDGISGLVHVSQISEKRIKSPKAVLSIGDTV 180

Query: 671 WVKLLDFDDRGKIKLSMKVVD 691
             K++  +D GKI LSMK ++
Sbjct: 181 KAKVIKNED-GKISLSMKALN 200


>gi|294673353|ref|YP_003573969.1| S1 RNA binding domain-containing protein [Prevotella ruminicola 23]
 gi|294474298|gb|ADE83687.1| S1 RNA binding domain protein [Prevotella ruminicola 23]
          Length = 731

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G V  + +FGAFV      DGLVHISQ++  R+A   DVVK    V V++ + D  R
Sbjct: 662 VLPGIVTNITNFGAFVDIGVHHDGLVHISQMANRRIAHPLDVVKLHQHVQVRVTEVDHRR 721

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 722 QRISLSMK 729


>gi|169827482|ref|YP_001697640.1| 30S ribosomal protein S1-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168991970|gb|ACA39510.1| 30S ribosomal protein S1-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 378

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVHISQ+S E V+  S+V+ EG  V VK+L  D + 
Sbjct: 189 VLDGKVQRLASFGAFIDLGGI-DGLVHISQVSHEHVSDVSEVLSEGQGVTVKVLSVDPEN 247

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 248 ERISLSIK 255



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G+V ++  FGAFV      +GLVHISQ++ + +    + +KEG  V VK+LD + + 
Sbjct: 274 ILEGKVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQDVQVKVLDVNAED 333

Query: 681 GKIKLSMKVVDQN 693
           G++ LS+K + +N
Sbjct: 334 GRLALSIKELLEN 346


>gi|149010508|ref|ZP_01831879.1| ribosomal protein S1 [Streptococcus pneumoniae SP19-BS75]
 gi|147764989|gb|EDK71918.1| ribosomal protein S1 [Streptococcus pneumoniae SP19-BS75]
          Length = 400

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSIK 262



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352


>gi|91202978|emb|CAJ72617.1| strongly similar to 30S ribosomal protein S1 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 584

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN--------KIYKGQVVKVMDFGAFVH 638
           IDD+  VKI      E E     ++  TD P  N           KGQVV +M +GAFV 
Sbjct: 264 IDDEVEVKILDVD-KEKEKVALGLKQKTDNPWFNIEEKYPVGSRVKGQVVNIMSYGAFVK 322

Query: 639 FCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                +GLVHIS++S T R+   S++V  GD V V +L  D ++ +I LS+K  + N
Sbjct: 323 LETGIEGLVHISEMSWTRRINHPSEIVAIGDMVEVVVLKIDREKEEISLSIKQTEVN 379



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 615 DVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++PE   V  I KG V K+ +FGAF+      +GL+H+S+ S ++++  +D V  GD + 
Sbjct: 471 EIPEKYKVGDIVKGHVTKLANFGAFLELGQGIEGLLHVSEFSDKKISNPADAVNVGDELE 530

Query: 672 VKLLDFDDRG-KIKLSMK 688
           VK++  +    KI LS+K
Sbjct: 531 VKVIRIEPEARKIGLSLK 548



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  +I   PP  I   +G          E T   + ID++    + S      E   +
Sbjct: 157 FLPASQIDVKPPGDIAQYVGQ---------ELTCRILKIDEERQNIVVSRRKLIEEEREK 207

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + +    E  +  KG V  + DFGAF+   G  DGL+HI+ +S  R++  S+++   D
Sbjct: 208 KKKLLLMEIEAGQTRKGVVKNIADFGAFIDL-GGMDGLLHITDMSWGRISHPSEMLAIDD 266

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+LD D ++ K+ L +K   Q T  P
Sbjct: 267 EVEVKILDVDKEKEKVALGLK---QKTDNP 293



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+V  + ++GAF+      DGL+HIS +S  ++VA  S++VK+GD +   +L  D ++ 
Sbjct: 395 KGRVRNLTNYGAFIEIEEGVDGLLHISDMSWAKKVAHPSEIVKKGDKIEAVVLSVDREKK 454

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 455 RVALGLK 461


>gi|91788399|ref|YP_549351.1| RNA-binding S1 [Polaromonas sp. JS666]
 gi|91697624|gb|ABE44453.1| RNA binding S1 [Polaromonas sp. JS666]
          Length = 803

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ E     +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G
Sbjct: 665 EGVEDIRDLKE-GMTLEGTVSNVAAFGAFVDIGVHQDGLVHVSQLANKFVNDAREVVKTG 723

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V V++ + D  R +I L+MK+ D
Sbjct: 724 DIVKVRVTEVDVARKRIGLTMKLGD 748


>gi|325673476|ref|ZP_08153167.1| S1 RNA binding domain protein [Rhodococcus equi ATCC 33707]
 gi|325555497|gb|EGD25168.1| S1 RNA binding domain protein [Rhodococcus equi ATCC 33707]
          Length = 774

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK GD V VK+L+ D +R
Sbjct: 644 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVSDPREVVKSGDVVKVKVLEVDVER 703

Query: 681 GKIKLSMKVVDQ 692
            +I L++++ D+
Sbjct: 704 QRIGLTLRLDDE 715


>gi|312139218|ref|YP_004006554.1| RNA binding protein [Rhodococcus equi 103S]
 gi|311888557|emb|CBH47869.1| RNA binding protein [Rhodococcus equi 103S]
          Length = 774

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK GD V VK+L+ D +R
Sbjct: 644 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVSDPREVVKSGDVVKVKVLEVDVER 703

Query: 681 GKIKLSMKVVDQ 692
            +I L++++ D+
Sbjct: 704 QRIGLTLRLDDE 715


>gi|312882500|ref|ZP_07742241.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369900|gb|EFP97411.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 556

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGAEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|260880822|ref|ZP_05893177.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
 gi|308093620|gb|EFO43315.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
          Length = 507

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|229118373|ref|ZP_04247727.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
 gi|228664943|gb|EEL20431.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
          Length = 119

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 18  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 78  SLSLKAAKRKQGRILI 93


>gi|311739725|ref|ZP_07713560.1| transcriptional accessory protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305541|gb|EFQ81609.1| transcriptional accessory protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 777

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+     I +G V  V  FGAFV     +DGLVH+S +S + V+   +VV+ 
Sbjct: 628 KEGVHKVSDLTP-GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHKFVSDPHEVVRS 686

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V VK+++ D +R +I LS++ +D   G+P
Sbjct: 687 GQVVKVKVMEVDVERQRIGLSLR-LDDEPGQP 717


>gi|189500922|ref|YP_001960392.1| 30S ribosomal protein S1 [Chlorobium phaeobacteroides BS1]
 gi|189496363|gb|ACE04911.1| RNA binding S1 domain protein [Chlorobium phaeobacteroides BS1]
          Length = 591

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           N ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 390 NSLHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQDLEVKVLKFD 449

Query: 679 -DRGKIKLSMKVVDQN 693
            +  +I L  K ++Q+
Sbjct: 450 VNARRIALGHKQINQD 465



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S T+ +   S  V  G  V   +L+ D +  K
Sbjct: 308 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVTLGQEVECVILNVDKEHTK 367

Query: 683 IKLSMKVVDQN 693
           + LSMK V+++
Sbjct: 368 LSLSMKRVNED 378



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AA+  EM+ +I    +V  I +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 200 LEEEYAAKREEMLANI----KVGMILEGSVKNITDFGIFVDL-GGLDGLVHITDITWGRI 254

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
              S+VV     + V ++ FD+  K + L MK ++ +  + I
Sbjct: 255 NHPSEVVDLDQPIKVVVVAFDENTKRVSLGMKQLESHPWENI 296


>gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01]
 gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01]
          Length = 238

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWITAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GD+  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDE--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|310828094|ref|YP_003960451.1| hypothetical protein ELI_2506 [Eubacterium limosum KIST612]
 gi|308739828|gb|ADO37488.1| hypothetical protein ELI_2506 [Eubacterium limosum KIST612]
          Length = 730

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           D+D  +K++  +L E     E +++  + D  EV      ++  V+DFGAF       +G
Sbjct: 563 DEDKKIKLSVKALKE-RPWEEFVKNYKVDDEVEV------KITNVLDFGAFAEILPGVEG 615

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           L+H+S++S +RV   + V+K GD V VK++  + ++ KI LS+K   +   +P
Sbjct: 616 LIHVSEISYDRVESVAAVLKPGDVVKVKIIGINTEKEKISLSIKATLEAPERP 668



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 595 IASSSLAEIEAA-REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I    + E +AA RE      D  EV  I  G V  + +FG FV   G  DG VH S L+
Sbjct: 479 ILEKEIKEKQAALREAKEKRFDELEVGDIVGGTVKTITNFGIFVDLNGI-DGFVHRSDLT 537

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
            ER  +  D+V++G  +  K++  +D   KIKLS+K + +
Sbjct: 538 WERANEPKDLVEKGQEIEAKVISKNDEDKKIKLSVKALKE 577


>gi|300718780|ref|YP_003743583.1| transcriptional accessory protein [Erwinia billingiae Eb661]
 gi|299064616|emb|CAX61736.1| putative transcriptional accessory protein [Erwinia billingiae
           Eb661]
          Length = 778

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS + +     VVK GD V VK+++ D  R
Sbjct: 653 VLEGAVTNVTGFGAFVDIGVHQDGLVHISSLSDKFIDDPHKVVKAGDIVKVKVMEVDLQR 712

Query: 681 GKIKLSMKVVDQ 692
            ++ L+M++ +Q
Sbjct: 713 KRVALTMRLDEQ 724


>gi|299137090|ref|ZP_07030273.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
 gi|298601605|gb|EFI57760.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
          Length = 752

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A  E +R ++DV +   + +G V  V  FGAF+     +DGLVHIS++S   +   S+V+
Sbjct: 631 AFNESVRELSDV-QPGMVLEGVVTNVTKFGAFIDIGVHQDGLVHISEISNRFIKDPSEVL 689

Query: 665 KEGDTVWVKLLDFDDRGK-IKLSMKVV 690
           K G  V  K+L  D + K I LS+K +
Sbjct: 690 KAGQIVKAKVLTADTKTKRIALSIKAL 716


>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
          Length = 253

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I      LQ   GS L   G+T+ I  V++     +     L G  +
Sbjct: 1   MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSV----QDGVPPFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSR------MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y+ LP AT  ++R       G  S R     R+  RA+   L  T     T  I
Sbjct: 57  GWITAEYSMLPRAT--ITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERTFWI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +A+ DA             PI   VA +++G V       
Sbjct: 115 DCDVIQADGGTRTASITGAFVAIADAVIKLYNEGILSSTPIKDFVASVSVGTVNGQ---- 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
           IL D++ +ED    +D  V  T SG
Sbjct: 171 ILLDLNYEEDSTASVDMNVVATGSG 195


>gi|260898312|ref|ZP_05906808.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
 gi|308089134|gb|EFO38829.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
          Length = 406

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 34  ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 88

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 89  DEIQVKVLKFDRERTRVSLGLK 110



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 125 PEGHKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 183

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 184 EIDEERRRISLGLKQCKAN 202


>gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 503

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPE--VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  ++E  RE  R  T + +  V  I KG+V+++  FGAF+   G  +GL+H+S++S + 
Sbjct: 184 SHRQLEEMREQERKETALAKLKVGDIVKGKVLRMTTFGAFIDLGGI-EGLMHVSEISWQH 242

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + +  D +K+G  + VK+LD     KI LS KV+
Sbjct: 243 IVRPQDELKKGQEIEVKILDIKGE-KIALSRKVL 275



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-D 679
           I   +V+++ +FGAF       +GL+ IS++S  R ++   D+VKEGD V V++L  D D
Sbjct: 292 IINCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDIVKEGDWVQVQILRIDED 351

Query: 680 RGKIKLSMKVVD 691
             KI LS+K ++
Sbjct: 352 THKISLSLKALE 363


>gi|325336774|gb|ADZ13048.1| Ribosomal protein S1 [Riemerella anatipestifer RA-GD]
          Length = 603

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  +  +G F+   G  DGLVHI+ LS  RV   ++++++G TV V +LDF
Sbjct: 232 EKGQVLEGTVKNITSYGVFIDLGGV-DGLVHITDLSWSRVNHPTEILEDGQTVKVVILDF 290

Query: 678 D-DRGKIKLSMK 688
           D D+ +I+L MK
Sbjct: 291 DEDKTRIQLGMK 302



 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V  ++L  D +  
Sbjct: 323 KGKVVVLADYGAFVEVAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAQVLTLDKEER 382

Query: 682 KIKLSMKVVDQN 693
           KI L MK + ++
Sbjct: 383 KISLGMKQLSED 394


>gi|294665049|ref|ZP_06730355.1| transcription-related protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605167|gb|EFF48512.1| transcription-related protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 786

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTCRLSD 727


>gi|254570329|ref|XP_002492274.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Pichia pastoris GS115]
 gi|238032072|emb|CAY69994.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Pichia pastoris GS115]
 gi|328353721|emb|CCA40119.1| Polyribonucleotide nucleotidyltransferase [Pichia pastoris CBS 7435]
          Length = 1694

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V  +Y+G + K+MDFG F+   G    DGL H SQ+S  ++     +  +GD V VK+L
Sbjct: 1236 KVGDVYEGTIKKIMDFGVFITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKIL 1295

Query: 676  DFDDRGKIKLSM 687
            D  +R K +LS+
Sbjct: 1296 DI-NRNKKQLSL 1306


>gi|229020135|ref|ZP_04176911.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
 gi|229026363|ref|ZP_04182720.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|229076280|ref|ZP_04209245.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|229099361|ref|ZP_04230291.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|229105521|ref|ZP_04236155.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|229141618|ref|ZP_04270149.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|229199050|ref|ZP_04325733.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|228584321|gb|EEK42456.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|228641816|gb|EEK98116.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|228677791|gb|EEL32034.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|228683985|gb|EEL37933.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|228706715|gb|EEL58923.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|228734826|gb|EEL85464.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|228741144|gb|EEL91366.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
          Length = 119

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 18  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKM 77

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 78  SLSLKAAKRKQGRILI 93


>gi|327400918|ref|YP_004341757.1| translation initiation factor 2 subunit alpha [Archaeoglobus
           veneficus SNP6]
 gi|327316426|gb|AEA47042.1| Translation initiation factor 2 subunit alpha [Archaeoglobus
           veneficus SNP6]
          Length = 272

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   +I  G V +V+DFGAFV       R+GLVHIS+++   +    D VK+G  V  K+
Sbjct: 20  PAKGEIVIGTVTRVLDFGAFVSLDEYEGREGLVHISEVAPGWIKDIRDYVKKGQKVVCKV 79

Query: 675 LDFD-DRGKIKLSMKVVDQ 692
           LD +  RG I LS+K V++
Sbjct: 80  LDVNPKRGHIDLSIKDVNE 98


>gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R]
 gi|166228277|sp|A4QGQ6|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 245

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++         DS  G    
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW--- 65

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E +R  + + +  G      RL  R++   +  +     T+ I  +
Sbjct: 66  -LTAEYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  PVA +++GLV DG+   +  
Sbjct: 125 VLQADGGTRTASITGAYVALADAIKVLQERGVVPGSPLLAPVAAVSVGLV-DGN---VCL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  +ED    +D  V  T+ G
Sbjct: 181 DLPYEEDSRADVDLNVVMTEHG 202


>gi|40062482|gb|AAR37434.1| ribosomal protein S1 [uncultured marine bacterium 105]
          Length = 589

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 21/174 (12%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE--------IMAIPPDQ------IR 564
           + L + K  ++ I +E+ K  ++ ++ +G    R++        + A  P        +R
Sbjct: 119 VVLSREKAEKMKIWDEIEKAYNDQKVVIGHVIERIKGGLAVDIGVRAFLPGSQIDVRPVR 178

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           N+  + G+ +R  V +   K      G + ++   L E E A +  ++++ + E  K+ K
Sbjct: 179 NLDSLRGEELRMRVIKVNKK-----RGNIVLSRKVLLEEENADKKQKTLSTLAE-GKVIK 232

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G V  + D+GAFV   G  DGL+HI+ +S  RV+  S++ K  D   V +L FD
Sbjct: 233 GIVKNLTDYGAFVDL-GGFDGLLHITDMSWGRVSHPSELFKINDEAEVIVLKFD 285



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN+   G++V + D+GAFV      +GL+H+S++S ++RV   S ++  GDTV   +L  
Sbjct: 312 VNERVNGRIVSLTDYGAFVELEPGVEGLIHVSEMSWSKRVKHPSKILTVGDTVEALVLAV 371

Query: 678 DDRG-KIKLSMKVVDQN 693
           D    +I L +K ++ N
Sbjct: 372 DPNARRISLGLKQIEVN 388



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  V +FGAFV      DGL+HIS +S ++R+   S+VV +GD V   +L+ D +  +
Sbjct: 405 GTVRNVTEFGAFVEVEEGVDGLIHISDMSWSKRLQHPSEVVNKGDEVESVVLNVDAENQR 464

Query: 683 IKLSMK 688
           + L +K
Sbjct: 465 LSLGLK 470


>gi|323701593|ref|ZP_08113265.1| RNA binding S1 domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323533366|gb|EGB23233.1| RNA binding S1 domain protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 129

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + +FGAFV   G   GLVHIS+++   V   ++ +K  D V VK++  
Sbjct: 4   EQGSIVEGVVTGITNFGAFVELPGGLTGLVHISEVAEVYVKDINEFLKVNDKVRVKVIAI 63

Query: 678 DDRGKIKLSMK 688
           D +GKI LS+K
Sbjct: 64  DPKGKIGLSLK 74


>gi|257884883|ref|ZP_05664536.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
 gi|257820721|gb|EEV47869.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
          Length = 417

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+  
Sbjct: 296 VGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIH 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +  +I LS+K +++
Sbjct: 356 PEEHRIALSIKALEE 370



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ DFGAFV   G  DGLVH+S++S   VAK SD++   D V VK+L  + ++
Sbjct: 214 VLSGRVARLTDFGAFVDLGGI-DGLVHVSEISHSHVAKPSDLLAVNDDVNVKVLSINPEQ 272

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 273 ERVSLSIK 280


>gi|149926155|ref|ZP_01914417.1| transcription accessory protein, TEX [Limnobacter sp. MED105]
 gi|149824973|gb|EDM84185.1| transcription accessory protein, TEX [Limnobacter sp. MED105]
          Length = 787

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 9/84 (10%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVH+S LS   V     VVK G  V VK+L+ D  R +
Sbjct: 661 EGVVTNVANFGAFVDIGVHQDGLVHVSALSNTFVKDPHAVVKTGQIVKVKVLEVDIPRKR 720

Query: 683 IKLSMKVVD--------QNTGKPI 698
           I L+MK+ D        QN G+ +
Sbjct: 721 ISLTMKMGDDVPKAAPGQNAGRQV 744


>gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10]
 gi|254808583|sp|B8I1A8|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10]
          Length = 240

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R +      ++   GS L   GDT+ I   ++  R      DS  G   
Sbjct: 2   LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGW-- 59

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y+ LP AT      ++S++    R  EI   RL  R++  ++        T+ I
Sbjct: 60  --VTAEYSMLPRATAVRNQRDISKLKLNGRSSEIQ--RLIGRSLRTIVDLKLLGERTITI 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ GS +AL+DA            +P++  VA  ++G+V +G++ +
Sbjct: 116 DCDVIQADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTVAATSVGIV-NGEELL 174

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            L  I   ED    +D  V  TD G
Sbjct: 175 DLCYI---EDSNAEVDMNVIKTDKG 196


>gi|148653919|ref|YP_001281012.1| RNA-binding S1 domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148573003|gb|ABQ95062.1| RNA binding S1 domain protein [Psychrobacter sp. PRwf-1]
          Length = 849

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S++D+ E  ++ +G V  V  FG FV     +DGLVHIS+++ + V    ++VK 
Sbjct: 685 RDDVNSVSDLEEGMQL-EGVVTNVTGFGCFVDVGVHQDGLVHISEMANDFVEDPMNLVKP 743

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V+++  D  R +I  SMK  D  + K
Sbjct: 744 GDIVSVRVISIDAKRNRIGFSMKSEDAASAK 774


>gi|91229576|ref|ZP_01262936.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
 gi|91187384|gb|EAS73741.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
          Length = 389

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLETLQEGSEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352


>gi|81429212|ref|YP_396213.1| hypothetical protein LSA1600 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610855|emb|CAI55907.1| Putative RNA-binding protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 147

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHIS++S   +    DV+  GD V VK++  
Sbjct: 4   EVGSKVPGKVTGITNFGAFVDLGEGKTGLVHISEVSDSYIKDIHDVLTVGDEVTVKVMS- 62

Query: 678 DDRGKIKLSM-KVVDQ 692
           D  GKI LS+ K VDQ
Sbjct: 63  DQNGKIGLSIRKAVDQ 78


>gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Spirochaeta coccoides DSM
           17374]
 gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Spirochaeta coccoides DSM 17374]
          Length = 571

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + K  V K+  FGAF+      +GL HIS+LS T+RV    DV+  GD V  K+L +
Sbjct: 286 VGDVVKAPVTKLTTFGAFIEIAPGIEGLAHISELSWTKRVNNPKDVLDVGDVVEAKILGY 345

Query: 678 D-DRGKIKLSMKVVDQN 693
           D D+ ++ L +K +++N
Sbjct: 346 DLDKKRVSLGLKQLEEN 362



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  + +G V     FGAF+   G  DGL+HI+ +S   V +  D VK+G T+ ++L++ D
Sbjct: 201 IGDVVQGVVKSFTSFGAFID-LGGFDGLLHINDMSWGHVTRPKDFVKKGQTIELRLINID 259

Query: 679 -DRGKIKLSMK 688
            +  K+ LS+K
Sbjct: 260 PETQKVNLSLK 270



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           SI D   V K     VVK+ + GAF+      DG +HI  +S TE+V   S   KEGD V
Sbjct: 366 SIDDRYPVGKTLTRPVVKITNSGAFIGLEDGIDGFLHIDDISWTEKVRNMSSFAKEGDMV 425

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            V +   + +  +I+LS+K ++ N
Sbjct: 426 DVVVTRVEPENRRIRLSVKQLEDN 449


>gi|313896602|ref|ZP_07830151.1| Tex-like protein N-terminal domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974787|gb|EFR40253.1| Tex-like protein N-terminal domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 733

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  + DFGAF+     + GL+HIS++S  RV    DV+  GD + V ++  D
Sbjct: 650 VGTVLRGTVRNITDFGAFIDIGLKQAGLLHISEMSGRRVRHPLDVLSVGDVLDVMIISID 709

Query: 679 D-RGKIKLSMK 688
           + RG+I LS+K
Sbjct: 710 ETRGRIGLSLK 720


>gi|307943385|ref|ZP_07658729.1| ribonuclease PH [Roseibium sp. TrichSKD4]
 gi|307773015|gb|EFO32232.1| ribonuclease PH [Roseibium sp. TrichSKD4]
          Length = 237

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 26/243 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G QR
Sbjct: 1   MRPSKRANDELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQQR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+  R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISKPV-----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL      M A   + K V     A I+ G + DG   +  
Sbjct: 117 DVIQADGGTRTAAITGSWVALRDCIEWMKARDMVKKDVLKDHIAAISCG-IHDGTPVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIM--VMALQQAKRGRLHILN 533
            D+   ED     D     T S GI  +Q   +    SE     +M L +A  GRL  L 
Sbjct: 174 -DLDYAEDSTAETDANFVMTGSGGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQ 232

Query: 534 EMS 536
           +MS
Sbjct: 233 KMS 235


>gi|254501681|ref|ZP_05113832.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437752|gb|EEE44431.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 809

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVH+SQL+ + V     VVK GD V V +L+ D  R +
Sbjct: 676 EGTVTNVTNFGAFVDVGVHQDGLVHVSQLADKFVGDPHTVVKAGDIVKVTILEVDIPRKR 735

Query: 683 IKLSMK 688
           I ++MK
Sbjct: 736 ISMTMK 741


>gi|149177391|ref|ZP_01855995.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
 gi|148843724|gb|EDL58083.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
          Length = 572

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V +  DFGAF+      +GL+HIS+L   RV + ++V+  G     K+L+ D +R +I
Sbjct: 457 GKVTRTTDFGAFIELEPGLEGLIHISELDHRRVKRVTEVLTTGQETSAKVLEVDPNRKRI 516

Query: 684 KLSMKVV 690
            LS+K +
Sbjct: 517 SLSIKAL 523



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E+ RE I + + +   + + + G V  + D+GAFV   G  DG +HI ++S  R+    
Sbjct: 349 LESEREEIQKELWEKLAIGQEHTGTVKNIKDYGAFVDLGGI-DGFLHIGEISWNRIKHPK 407

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + E   + VK+L  D ++ +I L MK + Q+
Sbjct: 408 DALSEHQQINVKILKIDKEKNRISLGMKQLQQD 440


>gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
 gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
          Length = 238

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RDI       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTASV----ENKVPPFLRGEGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRMG  + R    GR      L  R++   +   A   +T+ I
Sbjct: 57  GWITAEYGMLPRSTN--SRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G  +AL+DA             P+ + VA +++G+ K G   +
Sbjct: 115 DCDVIQADGGTRTAAITGGCVALVDALNFLVAQKRLKKSPLKQMVAAVSVGVFK-GKPVV 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED +   D  V  TD G
Sbjct: 174 ---DLDYPEDSVAETDMNVVMTDKG 195


>gi|115467950|ref|NP_001057574.1| Os06g0343100 [Oryza sativa Japonica Group]
 gi|54290955|dbj|BAD61636.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113595614|dbj|BAF19488.1| Os06g0343100 [Oryza sativa Japonica Group]
          Length = 1084

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 8/85 (9%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P + ++ +G+V  + D G FV    AR  +GLVH+S++   R+A     VK G  V+VK+
Sbjct: 127 PGLYQVCRGKVTGLADAGCFVRLDDARGREGLVHVSEMPGRRIA-----VKRGQEVFVKI 181

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699
           +    R  + LSM+ VDQ+TGK ++
Sbjct: 182 VSVQGR-NLGLSMRDVDQDTGKDLL 205


>gi|42522733|ref|NP_968113.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
 gi|39573929|emb|CAE79106.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
          Length = 398

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL---DFD 678
           + +G++V++  FGAFV      +GL+H+S+LS  RV    +VV  G  V VKL+   + D
Sbjct: 208 LLEGKIVRLEKFGAFVELEAGIEGLIHVSELSWSRVHDPKEVVMAGQPVTVKLIKMEEVD 267

Query: 679 DRGKIKLSMKVVDQNTGKP 697
            R KI LS+K  D   G P
Sbjct: 268 GRLKISLSLKQAD-GAGNP 285


>gi|303326814|ref|ZP_07357256.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
 gi|302862802|gb|EFL85734.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           +G++ ++  FGAF+    A +G++H+S+LS  RV    + V  GD V VK+L    +D+G
Sbjct: 205 EGRITRLAPFGAFMELAPAVEGMIHLSELSWSRVGAADEAVSPGDLVRVKVLGISKNDKG 264

Query: 682 KIKLSM 687
           +I++S+
Sbjct: 265 QIRISL 270



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 5/79 (6%)

Query: 615 DVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           D PE      + +G+VV++  FGAFV      +GL+H+S++S  +RV K  +V+  G+TV
Sbjct: 282 DAPERLSAGAVVQGKVVRLAPFGAFVELLPGVEGLIHVSEMSWAKRVNKPEEVLSAGETV 341

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            VK+ D + +  +I LS++
Sbjct: 342 SVKIKDVNTETRRIALSLR 360


>gi|116515126|ref|YP_802755.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256980|gb|ABJ90662.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 556

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 3/97 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             V ++  ++ E+E   E  R + ++ E + I +G V  + D+GAF+   G  DGL+HI+
Sbjct: 164 NNVVVSRKAVIELENNAERKRLLKNLQE-DTIVEGTVKNLTDYGAFIDLGGV-DGLLHIT 221

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            ++ +RV   S++V   D + VK+L FD+  KI++S+
Sbjct: 222 DMAWKRVKHPSEIVNISDKIKVKILKFDEE-KIRVSL 257



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 11/122 (9%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--------VPEVNKIYKGQVVKVMDFGAF 636
           VNI D   VKI      +I  +  + +  TD         PE NK Y G+V  + D+G F
Sbjct: 235 VNISDKIKVKILKFDEEKIRVSLGLKQLGTDPWINLSKRYPEGNK-YLGRVTNLTDYGCF 293

Query: 637 VHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           V      +GLVH+S++  T +  + + VV  GD ++V +L+ D +R +I L +K    N 
Sbjct: 294 VEIEEGIEGLVHVSEMDWTNKNIQPTKVVSSGDQIYVSILNIDEERRRISLGIKQCKINP 353

Query: 695 GK 696
            K
Sbjct: 354 WK 355


>gi|288942740|ref|YP_003444980.1| RNA binding S1 domain-containing protein [Allochromatium vinosum
           DSM 180]
 gi|288898112|gb|ADC63948.1| RNA binding S1 domain protein [Allochromatium vinosum DSM 180]
          Length = 402

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 6/84 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTV 670
           +I   P   ++ +G+V ++  FGAF+      DGLVHIS+L    RV   SDV+KEGD V
Sbjct: 284 AIEQFPAGTRV-QGRVARLQPFGAFIELAPGVDGLVHISELGAGRRVQHPSDVLKEGDEV 342

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
              ++  D +R +I LS+   D+N
Sbjct: 343 TATVIGVDLERRRISLSL---DEN 363



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL------ 675
           +  G V  + D+GAFV   G  +G++HISQL+   V    +V++ G  + V +L      
Sbjct: 203 VLTGTVTSLKDYGAFVDL-GGLEGMIHISQLAFGHVKHPKEVLQVGQPIEVSVLRIEPAT 261

Query: 676 DFDDRGKIKLSMKVVDQN 693
           D   R KI LS++ + ++
Sbjct: 262 DAKKRDKIALSIRALSRD 279


>gi|303285568|ref|XP_003062074.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456485|gb|EEH53786.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 844

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +KG V +V ++G FV F    DGLVHIS+L    V   +DVV E   V V +   D ++G
Sbjct: 74  FKGVVKRVQEYGCFVDFGAKSDGLVHISELKDGFVENVADVVSENQEVQVFIKSIDAEKG 133

Query: 682 KIKLSMK 688
           +I L+MK
Sbjct: 134 RISLTMK 140



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  +  FGAFV      +GLVH++++S +   K  D V  G+TV V++L  D + K+
Sbjct: 189 EGVVKSIQAFGAFVEIAEGVEGLVHVTEMSEDYNVKPEDFVTVGETVKVRVLGVDGQ-KV 247

Query: 684 KLSMK 688
           KLSMK
Sbjct: 248 KLSMK 252


>gi|20089531|ref|NP_615606.1| translation initiation factor IF-2 subunit alpha [Methanosarcina
           acetivorans C2A]
 gi|19914443|gb|AAM04086.1| translation initiation factor 2, subunit alpha [Methanosarcina
           acetivorans C2A]
          Length = 271

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 609 MIRSITD-VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVK 665
           M+R   D  PE+ +     V  V DFGA+V     G R+G +HIS++    V    D V+
Sbjct: 1   MVRMGNDNWPEIGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVR 60

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           EG  +  K+L+ D  RG I LS+K V+++
Sbjct: 61  EGQKIVCKVLNVDPSRGHIDLSLKDVNEH 89


>gi|117923488|ref|YP_864105.1| 30S ribosomal protein S1P [Magnetococcus sp. MC-1]
 gi|117607244|gb|ABK42699.1| SSU ribosomal protein S1P [Magnetococcus sp. MC-1]
          Length = 570

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           IE  RE  RS + +      +  G V  + D+GAFV   G  DGL+HI+ +S +RV   S
Sbjct: 184 IEKHRENARSALLETLHEGMVLDGIVKNITDYGAFVDL-GGLDGLLHITDMSWKRVKHPS 242

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            VV  GDTV V+++ F+ D  +I L MK
Sbjct: 243 AVVNVGDTVTVQVIKFNSDTQRISLGMK 270



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + D+G+FV      +GL H+S+L+ T++    S +++    V V +LD D DR
Sbjct: 290 FSGHVTNITDYGSFVELEPGVEGLAHVSELTWTKKNIHPSKILEVNQIVEVMVLDVDADR 349

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   +N
Sbjct: 350 RRISLGIKQCQEN 362


>gi|260426043|ref|ZP_05780022.1| protein tex [Citreicella sp. SE45]
 gi|260420535|gb|EEX13786.1| protein tex [Citreicella sp. SE45]
          Length = 786

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+     + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD 
Sbjct: 639 VEEITDL-RPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDV 697

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V++ + D  R +I LSM+
Sbjct: 698 VRVRVTEVDVPRKRIGLSMR 717


>gi|95931126|ref|ZP_01313851.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95132816|gb|EAT14490.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 747

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E  + R+ ++ ++D+ +   + +G V  V  FGAFV     +DGLVHIS+L+   V   +
Sbjct: 655 ETASFRDDVQEMSDL-QPGMVLQGSVTNVAAFGAFVDIGVHQDGLVHISELADRFVKNPA 713

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++VK G  V VK+L  D  R +I LS+K
Sbjct: 714 EIVKVGQVVHVKVLSVDTTRKRISLSIK 741


>gi|300113866|ref|YP_003760441.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
           C-113]
 gi|299539803|gb|ADJ28120.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
           C-113]
          Length = 786

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I+++ D+ +   I +G V  V  FGAFV     +DGLVHIS L+   V    ++V  
Sbjct: 656 KEEIQTLEDL-KPGMILEGVVTNVTAFGAFVDVGVHQDGLVHISALADRFVKDPHEIVSA 714

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKV 689
           GD V VK+L+ D+ R +I L+M++
Sbjct: 715 GDIVKVKVLEIDNVRKRIGLTMRL 738


>gi|170754879|ref|YP_001781355.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum B1 str. Okra]
 gi|169120091|gb|ACA43927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum B1 str. Okra]
          Length = 638

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + +G+V +  DFGAF+   G  DGL+H+S++S  RV K  D +K G+ + V +LD 
Sbjct: 477 EKDTVVEGEVKRFTDFGAFIEINGV-DGLLHVSEISWGRVEKPEDALKIGNKIKVYILDI 535

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K+ LS+K + ++  K +
Sbjct: 536 DKENKKLALSIKKLIEDPWKSV 557



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I
Sbjct: 569 GKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRI 628

Query: 684 KLSMKVVDQ 692
            LS+K V++
Sbjct: 629 ALSIKDVEE 637


>gi|332289032|ref|YP_004419884.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
 gi|330431928|gb|AEC16987.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
          Length = 763

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           I +G V  V +FGAFV     +DGLVHIS LS + V    DVVK GD      L    DR
Sbjct: 652 ILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHDVVKTGDIVKVKVLEVEVDR 711

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M+ +D+ T +P
Sbjct: 712 RRIALTMR-LDEQTNRP 727


>gi|229175595|ref|ZP_04303104.1| RNA binding S1 domain protein [Bacillus cereus MM3]
 gi|228607853|gb|EEK65166.1| RNA binding S1 domain protein [Bacillus cereus MM3]
          Length = 119

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D+   K+
Sbjct: 18  GKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKIGDTVEVKVLSIDEEHRKM 77

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K   +  G+ ++
Sbjct: 78  SLSLKAARRKQGRILI 93


>gi|262038518|ref|ZP_06011887.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
 gi|261747387|gb|EEY34857.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
          Length = 230

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 23/198 (11%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R++      +    GS L   G+T+ I   T+    +E+    L GT       
Sbjct: 5   RKNDEMREVKVTKNYIMHPEGSVLIEFGNTKVICNATV----EEKVPPFLRGTNSGWITA 60

Query: 377 HYNFLPCATGE-VSR---MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ LP AT   V R    G  S R +   RL  RA+   +        T+ I  ++ ++
Sbjct: 61  EYSMLPRATNNRVQREANKGRLSGRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQA 120

Query: 433 DGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G  LA       L+D G    +PI+  VA +++G +K+     IL D+  
Sbjct: 121 DGGTRTASITGGYLALELAIEKLIDKGKLNEIPINSRVAAVSVGKIKNE----ILLDLEY 176

Query: 482 DEDHLGHMDFKVAGTDSG 499
           +ED    +D  +   D G
Sbjct: 177 EEDFRADVDMNIIMNDKG 194


>gi|325921819|ref|ZP_08183636.1| transcriptional accessory protein [Xanthomonas gardneri ATCC 19865]
 gi|325547696|gb|EGD18733.1| transcriptional accessory protein [Xanthomonas gardneri ATCC 19865]
          Length = 788

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTCRLSD 727


>gi|325917461|ref|ZP_08179670.1| transcriptional accessory protein [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536335|gb|EGD08122.1| transcriptional accessory protein [Xanthomonas vesicatoria ATCC
           35937]
          Length = 787

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ D  R
Sbjct: 657 VLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVAR 716

Query: 681 GKIKLSMKVVD 691
            +I L+ ++ D
Sbjct: 717 KRIALTCRLSD 727


>gi|307708663|ref|ZP_07645126.1| toxin expression - transcriptional accessory protein [Streptococcus
           mitis NCTC 12261]
 gi|307615237|gb|EFN94447.1| toxin expression - transcriptional accessory protein [Streptococcus
           mitis NCTC 12261]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|325983541|ref|YP_004295943.1| 30S ribosomal protein S1 [Nitrosomonas sp. AL212]
 gi|325533060|gb|ADZ27781.1| ribosomal protein S1 [Nitrosomonas sp. AL212]
          Length = 570

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + D+GAFV   G  DGL+HI+ L+  RV   S+VV  GD V  K+L FD ++
Sbjct: 204 VVQGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVVNIGDEVTAKVLKFDQEK 262

Query: 681 GKIKLSMKVVDQN 693
            ++ L MK + ++
Sbjct: 263 NRVSLGMKQLSED 275



 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAF+      +GLVH+S++  T +    S +V+ GD V V +L+ D +R +
Sbjct: 292 GKVTNLTDYGAFIEIEQGIEGLVHVSEMDWTNKNVYPSKIVQLGDEVEVMILEIDEERRR 351

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 352 ISLGMKQCQTN 362



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD 678
           N   +GQ+  + DFG F+   G  DGLVH+S LS  +  + + +  K+GD V   +L  D
Sbjct: 374 NAKVRGQIKSITDFGVFIGLPGNIDGLVHLSDLSWNQPGEEAVLNYKKGDEVEAMILSID 433

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            +R +I L +K   Q  G P 
Sbjct: 434 VERERISLGIK---QMEGDPF 451


>gi|301794055|emb|CBW36456.1| putative transcription accessory protein [Streptococcus pneumoniae
           INV104]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|307704740|ref|ZP_07641637.1| protein tex [Streptococcus mitis SK597]
 gi|307621719|gb|EFO00759.1| protein tex [Streptococcus mitis SK597]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|307706709|ref|ZP_07643514.1| protein tex [Streptococcus mitis SK321]
 gi|307617794|gb|EFN96956.1| protein tex [Streptococcus mitis SK321]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|302023682|ref|ZP_07248893.1| 30S ribosomal protein S1 [Streptococcus suis 05HAS68]
          Length = 156

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D +  G  V VK+L+    D
Sbjct: 36  VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAAD 95

Query: 679 DRGKIKLSMKVVDQN 693
           +R  + LS+K +++ 
Sbjct: 96  ER--VSLSIKALEER 108


>gi|125597126|gb|EAZ36906.1| hypothetical protein OsJ_21250 [Oryza sativa Japonica Group]
          Length = 1052

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 8/85 (9%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P + ++ +G+V  + D G FV    AR  +GLVH+S++   R+A     VK G  V+VK+
Sbjct: 95  PGLYQVCRGKVTGLADAGCFVRLDDARGREGLVHVSEMPGRRIA-----VKRGQEVFVKI 149

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPIV 699
           +    R  + LSM+ VDQ+TGK ++
Sbjct: 150 VSVQGR-NLGLSMRDVDQDTGKDLL 173


>gi|116516081|ref|YP_816286.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
           D39]
 gi|148988340|ref|ZP_01819787.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
 gi|225856571|ref|YP_002738082.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
 gi|237649296|ref|ZP_04523548.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI 1974]
 gi|116076657|gb|ABJ54377.1| S1 RNA binding domain [Streptococcus pneumoniae D39]
 gi|147926021|gb|EDK77095.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
 gi|225725987|gb|ACO21839.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
 gi|332076190|gb|EGI86656.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41301]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|237820844|ref|ZP_04596689.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 725

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 649 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 708

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 709 -TEREKVNLSL 718


>gi|229542549|ref|ZP_04431609.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229326969|gb|EEN92644.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 725

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS+LS   V    D+V  GD  TVWV+ +D   +G
Sbjct: 657 QGTVRNVVDFGAFVDVGVKEDGLVHISKLSKGFVKHPLDIVSVGDIVTVWVEKVDV-QKG 715

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 716 RLSLTM 721


>gi|254409483|ref|ZP_05023264.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183480|gb|EDX78463.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 718

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E ++ ++D+ +V    +G V  V +FGAFV     +DGLVHISQL+   V    ++VK 
Sbjct: 632 KEGVKEMSDL-KVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKEIVKV 690

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  V V++L  D++ K I LSM+   Q
Sbjct: 691 GQVVNVRVLSVDEKLKRIGLSMRAAQQ 717


>gi|15925053|ref|NP_372587.1| transcription accessory protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927638|ref|NP_375171.1| hypothetical protein SA1868 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268515|ref|YP_001247458.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394578|ref|YP_001317253.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980379|ref|YP_001442638.1| hypothetical protein SAHV_2048 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006852|ref|ZP_05145453.2| hypothetical protein SauraM_10300 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794513|ref|ZP_05643492.1| transcription accessory protein [Staphylococcus aureus A9781]
 gi|258411257|ref|ZP_05681535.1| transcription accessory protein [Staphylococcus aureus A9763]
 gi|258419773|ref|ZP_05682739.1| transcription accessory protein [Staphylococcus aureus A9719]
 gi|258438080|ref|ZP_05689459.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258441328|ref|ZP_05690813.1| transcription accessory protein [Staphylococcus aureus A8115]
 gi|258446978|ref|ZP_05695130.1| transcription accessory protein [Staphylococcus aureus A6300]
 gi|258449789|ref|ZP_05697889.1| transcription accessory protein [Staphylococcus aureus A6224]
 gi|258453473|ref|ZP_05701452.1| transcription accessory protein [Staphylococcus aureus A5937]
 gi|269203697|ref|YP_003282966.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282895211|ref|ZP_06303427.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8117]
 gi|282929290|ref|ZP_06336861.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A10102]
 gi|295407609|ref|ZP_06817400.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8819]
 gi|296275694|ref|ZP_06858201.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297246606|ref|ZP_06930437.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8796]
 gi|13701858|dbj|BAB43150.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247836|dbj|BAB58225.1| similar to RNA binding protein, contains S1 domain [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|147741584|gb|ABQ49882.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947030|gb|ABR52966.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722514|dbj|BAF78931.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788485|gb|EEV26825.1| transcription accessory protein [Staphylococcus aureus A9781]
 gi|257840012|gb|EEV64478.1| transcription accessory protein [Staphylococcus aureus A9763]
 gi|257844255|gb|EEV68638.1| transcription accessory protein [Staphylococcus aureus A9719]
 gi|257848497|gb|EEV72487.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257852372|gb|EEV76297.1| transcription accessory protein [Staphylococcus aureus A8115]
 gi|257854211|gb|EEV77162.1| transcription accessory protein [Staphylococcus aureus A6300]
 gi|257856963|gb|EEV79864.1| transcription accessory protein [Staphylococcus aureus A6224]
 gi|257864345|gb|EEV87094.1| transcription accessory protein [Staphylococcus aureus A5937]
 gi|262075987|gb|ACY11960.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282589100|gb|EFB94199.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A10102]
 gi|282762401|gb|EFC02545.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8117]
 gi|285817728|gb|ADC38215.1| Transcription accessory protein (S1 RNA-binding domain)
           [Staphylococcus aureus 04-02981]
 gi|294967507|gb|EFG43545.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8819]
 gi|297176506|gb|EFH35772.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8796]
 gi|312830415|emb|CBX35257.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128402|gb|EFT84411.1| hypothetical protein CGSSa03_08001 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727782|gb|EGG64234.1| Tex-like protein N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 716

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VWV  +   D+ K K+S+ ++D
Sbjct: 695 VWVYSI---DKNKDKVSLTMID 713


>gi|282911630|ref|ZP_06319429.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282324395|gb|EFB54708.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WBG10049]
          Length = 492

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD 
Sbjct: 410 VLSIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDI 468

Query: 670 --VWVKLLDFDDRGKIKLSMKVVD 691
             VW+  +   D+ K K+S+ ++D
Sbjct: 469 VDVWIHSI---DKNKDKVSLTMID 489


>gi|158321651|ref|YP_001514158.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158141850|gb|ABW20162.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 142

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I  G V  + +FGAF+     + GLVHIS+++ + V    D +K    V VK+L  
Sbjct: 4   QVGAILDGTVSGITNFGAFIDLGEGKTGLVHISEVADDYVKNIHDYLKTQQKVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
           +D GKI LS+K
Sbjct: 64  EDNGKISLSIK 74


>gi|315126548|ref|YP_004068551.1| 30S ribosomal protein S1 [Pseudoalteromonas sp. SM9913]
 gi|332534571|ref|ZP_08410406.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis ANT/505]
 gi|315015062|gb|ADT68400.1| 30S ribosomal protein S1 [Pseudoalteromonas sp. SM9913]
 gi|332035991|gb|EGI72470.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 555

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREELLANLVEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD D+ ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347


>gi|229916479|ref|YP_002885125.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229467908|gb|ACQ69680.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 130

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E +++  G+V  +  FGAFV       GLVHIS++S + V   +D V+ G  V VK+L+ 
Sbjct: 5   EKDQVLTGKVTGIQPFGAFVALDDETQGLVHISEISHDYVKDVNDYVQVGQEVEVKILEV 64

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KIKLSMK   +
Sbjct: 65  DEASKKIKLSMKATQE 80


>gi|168186332|ref|ZP_02620967.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169295859|gb|EDS77992.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 634

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 9/88 (10%)

Query: 610 IRSITDVPEVN--------KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           I+ +T+ P  N         I  G+VV+  DFGAFV      DGLVH+S++S +R+ K S
Sbjct: 544 IKKLTEDPWTNVEEKYPVGSIVLGKVVRFADFGAFVQLEPGIDGLVHVSEISYKRINKPS 603

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           DV++  + V  K+++ +   K + LS+K
Sbjct: 604 DVLEINEEVKAKIINVNKETKRLSLSIK 631



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 9/86 (10%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA+ E+++        + I +G+V ++  FGAFV   G  DGL+H+S++S  RV K  DV
Sbjct: 468 EASWEILKK-------DSIVEGEVKRLTKFGAFVDVNGI-DGLLHVSEISWGRVEKPEDV 519

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +  G+ V V +L+ D   K KLS+ +
Sbjct: 520 LSVGEKVKVYILNVDKENK-KLSLSI 544


>gi|119471943|ref|ZP_01614228.1| 30S ribosomal protein S1 [Alteromonadales bacterium TW-7]
 gi|119445201|gb|EAW26492.1| 30S ribosomal protein S1 [Alteromonadales bacterium TW-7]
          Length = 555

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREELLANLVEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD D+ ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347


>gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|24638170|sp|Q8NMR4|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032]
 gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032]
          Length = 245

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++         DS  G    
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW--- 65

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E +R  + + +  G      RL  R++   +  +     T+ I  +
Sbjct: 66  -LTAEYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  PVA +++GLV DG+   +  
Sbjct: 125 VLQADGGTRTASITGAYVALADAIKVLQERGVVPGSPLLAPVAAVSVGLV-DGN---VCL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  +ED    +D  V  T+ G
Sbjct: 181 DLPYEEDSRADVDLNVVMTEHG 202


>gi|88859273|ref|ZP_01133913.1| 30S ribosomal subunit protein S1 [Pseudoalteromonas tunicata D2]
 gi|88818290|gb|EAR28105.1| 30S ribosomal subunit protein S1 [Pseudoalteromonas tunicata D2]
          Length = 555

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQERDELLANLIEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD D+ ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSLGLK 260



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G++  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +L
Sbjct: 275 PEGSKLT-GRITNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347


>gi|167044666|gb|ABZ09337.1| putative S1 RNA binding domain protein [uncultured marine
           microorganism HF4000_APKG7H23]
          Length = 379

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G V K+ DFGAF       +GL+H+S+LS   +    +VV+ GD++ ++++  D
Sbjct: 294 LGQLVSGTVTKLADFGAFTRVEETVEGLIHVSELSDRHIRHPREVVQVGDSLTLRIVSLD 353

Query: 679 -DRGKIKLSMKVVDQNTGK 696
            +R +I LS++ V+   GK
Sbjct: 354 LERHRIGLSLRQVEDPEGK 372


>gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
 gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|33301645|sp|Q87T93|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
          Length = 238

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  R
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GD+  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDE--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|257437093|ref|ZP_05613133.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282914908|ref|ZP_06322688.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|257283486|gb|EEV13613.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282321111|gb|EFB51442.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M899]
          Length = 716

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIHSI---DKNKDKVSLTMID 713


>gi|237808314|ref|YP_002892754.1| 30S ribosomal protein S1 [Tolumonas auensis DSM 9187]
 gi|237500575|gb|ACQ93168.1| ribosomal protein S1 [Tolumonas auensis DSM 9187]
          Length = 556

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    ++ + E +++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIETENSSERDSLLSSLQEGHEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260



 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++  T +    S VV  GDTV V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDTVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 342 ISLGLKQCKAN 352



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S    A   D V+E   GD +   +L  D +R
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEDAVREFKKGDEIEAVVLQVDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 427 ERISLGVKQIEED 439


>gi|15902852|ref|NP_358402.1| toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae R6]
 gi|149002452|ref|ZP_01827386.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|15458408|gb|AAK99612.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae R6]
 gi|147759389|gb|EDK66381.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 715

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 639 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 698

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 699 -TEREKVNLSL 708


>gi|49484289|ref|YP_041513.1| RNA binding protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257428860|ref|ZP_05605254.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431470|ref|ZP_05607843.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434180|ref|ZP_05610530.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|282904729|ref|ZP_06312603.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906408|ref|ZP_06314259.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909376|ref|ZP_06317191.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282920239|ref|ZP_06327963.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925451|ref|ZP_06333105.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958842|ref|ZP_06376287.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293508982|ref|ZP_06667769.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293547494|ref|ZP_06672169.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428650|ref|ZP_06821276.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297589873|ref|ZP_06948513.1| YhgF like protein [Staphylococcus aureus subsp. aureus MN8]
 gi|49242418|emb|CAG41132.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257274202|gb|EEV05719.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277711|gb|EEV08381.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280819|gb|EEV10964.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|282312852|gb|EFB43253.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316099|gb|EFB46480.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282326646|gb|EFB56944.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330358|gb|EFB59876.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282594762|gb|EFB99739.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|283789560|gb|EFC28383.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919614|gb|EFD96687.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094686|gb|EFE24958.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|295127320|gb|EFG56960.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297577001|gb|EFH95715.1| YhgF like protein [Staphylococcus aureus subsp. aureus MN8]
 gi|312437523|gb|ADQ76594.1| YhgF like protein [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193222|gb|EFU23620.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 716

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIHSI---DKNKDKVSLTMID 713


>gi|282898392|ref|ZP_06306383.1| RNA binding S1 [Raphidiopsis brookii D9]
 gi|281196923|gb|EFA71828.1| RNA binding S1 [Raphidiopsis brookii D9]
          Length = 718

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE IR I D+  V    +G +  V +FGAFV     +DGLVHISQL+   V     +VK 
Sbjct: 634 REGIREIRDLT-VGMELEGIITNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKTIVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMK 688
           G  V V++L+ +++ K I LSM+
Sbjct: 693 GQLVKVRVLEVNEKLKRISLSMR 715


>gi|77360368|ref|YP_339943.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis TAC125]
 gi|76875279|emb|CAI86500.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
           component of the degradosome [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 555

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E ++E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESENSQEREELLANLVEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD D+ ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD+V V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDSVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D +R +I L +K
Sbjct: 334 EIDEERRRISLGLK 347


>gi|33519839|ref|NP_878671.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
 gi|33504184|emb|CAD83446.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
          Length = 575

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAF+   G  DGL+HI+ ++ +RV   SD++  GD + VK+L FD +R
Sbjct: 194 IIKGVVKNLTDYGAFIDL-GGIDGLLHITDIAWKRVKHPSDIISIGDEISVKVLKFDRER 252

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            ++ L +K ++ +    IV
Sbjct: 253 TRVSLGLKQLEDDPWISIV 271



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G F+   G  +GLVHIS++  T +    S VV+ G+ + V +LD D DR +
Sbjct: 282 GKVTNLTDYGCFIEIAGGVEGLVHISEMDWTNKNIHPSKVVEVGECIEVMVLDIDEDRRR 341

Query: 683 IKLSMK 688
           I L +K
Sbjct: 342 ISLGLK 347


>gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B]
 gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B]
          Length = 240

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+   A   + + +  
Sbjct: 59  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GD+  +L
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDE--VL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEEG 197


>gi|221231683|ref|YP_002510835.1| transcription accessory protein [Streptococcus pneumoniae ATCC
           700669]
 gi|220674143|emb|CAR68663.1| putative transcription accessory protein [Streptococcus pneumoniae
           ATCC 700669]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|148997004|ref|ZP_01824658.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575569|ref|ZP_02721505.1| protein tex [Streptococcus pneumoniae MLV-016]
 gi|307067562|ref|YP_003876528.1| transcriptional accessory protein [Streptococcus pneumoniae AP200]
 gi|147756704|gb|EDK63744.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578556|gb|EDT99084.1| protein tex [Streptococcus pneumoniae MLV-016]
 gi|306409099|gb|ADM84526.1| Transcriptional accessory protein [Streptococcus pneumoniae AP200]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V K  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGKKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|227522435|ref|ZP_03952484.1| S1 domain RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227090387|gb|EEI25699.1| S1 domain RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 722

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS++S   V   S +V  GD  TVW+  +D  +R 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDV-NRH 711

Query: 682 KIKLSM 687
           +I+LSM
Sbjct: 712 RIQLSM 717


>gi|147749|gb|AAA24596.1| polynucleotide phosphorylase [Escherichia coli]
          Length = 62

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 8  EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
          + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 8  KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62


>gi|54026120|ref|YP_120362.1| putative RNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54017628|dbj|BAD58998.1| putative RNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 783

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V VK+L+ D  R
Sbjct: 649 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVKDPREVVKSGDVVKVKVLEVDVAR 708

Query: 681 GKIKLSMKVVDQ 692
            +I LS+++ D+
Sbjct: 709 QRIGLSLRLDDE 720


>gi|302874418|ref|YP_003843051.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690976|ref|ZP_07633422.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577275|gb|ADL51287.1| RNA binding S1 domain protein [Clostridium cellulovorans 743B]
          Length = 308

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           +  SI D   V  I + +VVK++ FGA V      +GLVH SQ+S +RV    D +KEG 
Sbjct: 191 LWESIDDKYRVGDIVETKVVKLLKFGAIVKLEEGVEGLVHNSQISDDRVMNPGDYLKEGQ 250

Query: 669 TVWVKLLDFDD-RGKIKLSMK 688
            + VK+L  D  + KI LS K
Sbjct: 251 DIKVKILTIDKVQKKISLSYK 271


>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
          Length = 190

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 13/185 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370
           +R+DGR    +R I A++G + +  GS++F  G+T+ I  V  G RE +     +S    
Sbjct: 9   LRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAV-YGPREVQNRNQQISSHAL 67

Query: 371 -RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
            R ++ M  NF   +TG+  R     RR      + R+ +   +  T   P + + I  +
Sbjct: 68  VRCEYSMA-NF---STGDRMRKPKGDRRSTEISLVIRQTMEACI-LTHLLPRSQIDIYVQ 122

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A +  ++LAL DAG+P+   V   + G +    +   L D++  ED  G 
Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYL----NSTPLLDLNYVEDSAGG 178

Query: 489 MDFKV 493
            D  +
Sbjct: 179 PDVTL 183


>gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2]
 gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1]
 gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1]
          Length = 244

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 6   RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 61

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    G  SR G    R     RL  R++  V+   A    T+ +  +
Sbjct: 62  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GVPISKPVAG----IAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA       G  +S+P+ G    I++G+V    D I + 
Sbjct: 122 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED     D  V  + +G
Sbjct: 178 DLAYEEDSRADTDMNVVMSGNG 199



 Score = 37.4 bits (85), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 16  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 74

Query: 71  GKIPGGYLRRESRPTE---NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
            +  G    RESR  +       ISR++ RS+R +       E  +I+  +V+Q D    
Sbjct: 75  NERSG----RESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQAD--GG 128

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS- 173
               S+  A  AL+           L   P  G V    V  ++G  +L+   +ED  + 
Sbjct: 129 TRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEEDSRAD 188

Query: 174 --LDLFVSGTQDAV 185
             +++ +SG  D V
Sbjct: 189 TDMNVVMSGNGDFV 202


>gi|309800113|ref|ZP_07694305.1| putative 30S ribosomal protein S1 [Streptococcus infantis SK1302]
 gi|308116254|gb|EFO53738.1| putative 30S ribosomal protein S1 [Streptococcus infantis SK1302]
          Length = 400

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G  V VK+L+ + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVTVKVLEVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEVEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|149430580|ref|XP_001515504.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus]
          Length = 245

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 8/183 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E  + + S
Sbjct: 6   LLSDEGYRVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-MRGLRS 63

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
            +   R      ++    +TGE  R     R+     +  ++     +  T  +P + + 
Sbjct: 64  RALPDRALVNCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAI-LTQLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I ++DG +  A V  ++LA++DAG+P+   V   + G V+D      L+D+S  E+
Sbjct: 123 IYVQILQADGGNYAACVNAATLAVLDAGIPLRDFVCASSAGFVED----TPLADLSYVEE 178

Query: 485 HLG 487
             G
Sbjct: 179 AAG 181


>gi|169833704|ref|YP_001694361.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996206|gb|ACA36818.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 790

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 714 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 773

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 774 -TEREKVNLSL 783


>gi|149019492|ref|ZP_01834811.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
 gi|147930867|gb|EDK81847.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|320102727|ref|YP_004178318.1| 30S ribosomal protein S1P [Isosphaera pallida ATCC 43644]
 gi|319750009|gb|ADV61769.1| SSU ribosomal protein S1P [Isosphaera pallida ATCC 43644]
          Length = 594

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 614 TDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            D+P   + N++  G+V K+ +FG FV      +GL+HIS+LS ++V    DVV+ G  +
Sbjct: 461 NDIPKRYQPNQMVTGKVTKLTNFGVFVELEPGLEGLLHISELSDQKVESPDDVVQLGQEI 520

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V++L  D +  KI LS+K
Sbjct: 521 EVRVLRVDRNERKIGLSLK 539



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV VM +GAFV      +GLVHIS++S T+R+   S++V  GD V V +L+ + ++ +
Sbjct: 300 GEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSELVNIGDKVEVVVLNINKEKQE 359

Query: 683 IKLSMK 688
           I L MK
Sbjct: 360 ISLGMK 365



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 589 DDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+    I  S    IE  RE+  +++    E  +I KG V  + DFGAFV   G  DGL+
Sbjct: 178 DEARRNIVVSRRKLIEMTRELQKKTLLAEIEPGQIRKGVVKNIADFGAFVDLGGI-DGLL 236

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           HI+ +S  R+   +D+V   D + V ++  D ++ KI L +K   Q T  P
Sbjct: 237 HITDMSWGRINNPTDMVAINDEIEVYVIHVDKEKEKIALGLK---QKTASP 284



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           N   +G V  + ++GAF+      DGL+HIS +S T ++   ++++++G+ +  ++L  D
Sbjct: 382 NTEIEGTVRNLTNYGAFIEIEEGIDGLLHISDMSWTRKIGHPNELLQKGERIRCQVLSVD 441

Query: 679 -DRGKIKLSMK 688
            +R +I L +K
Sbjct: 442 QERKRIALGLK 452


>gi|302669575|ref|YP_003829535.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394048|gb|ADL32953.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 890

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHIS ++ + +    + V  GD V V++LD + D+
Sbjct: 723 ILKGTVRNVIDFGCFVDIGVHQDGLVHISHITDKFIKHPLEAVSVGDIVDVQVLDVELDK 782

Query: 681 GKIKLSMKVVD 691
            +I L+MK+ D
Sbjct: 783 KRIALTMKLGD 793


>gi|160913588|ref|ZP_02076278.1| hypothetical protein EUBDOL_00064 [Eubacterium dolichum DSM 3991]
 gi|158434049|gb|EDP12338.1| hypothetical protein EUBDOL_00064 [Eubacterium dolichum DSM 3991]
          Length = 714

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV--WVKLLD 676
           V   ++G V  V+DFGAFV      DGLVHIS++S  R++  S++V  GD V  WV  +D
Sbjct: 642 VGDCFEGVVRNVVDFGAFVDIGLHEDGLVHISKMSKGRISHPSELVSVGDIVKTWVCNID 701

Query: 677 FDDRGKIKLSM 687
            +++ K++LS+
Sbjct: 702 -EEKQKVQLSL 711


>gi|92114285|ref|YP_574213.1| 30S ribosomal protein S1 [Chromohalobacter salexigens DSM 3043]
 gi|91797375|gb|ABE59514.1| SSU ribosomal protein S1P [Chromohalobacter salexigens DSM 3043]
          Length = 559

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ ++ +  ++N I K     + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLATLQEGQQINGIVK----NLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD V VK+L FD +R ++ L +K
Sbjct: 231 PSEIVAVGDEVNVKVLKFDRERNRVSLGLK 260



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PENTRV-NARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDDVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCTTN 352


>gi|307108388|gb|EFN56628.1| hypothetical protein CHLNCDRAFT_22007 [Chlorella variabilis]
          Length = 327

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V+ V  +GAFV   GA  GL+HISQ+S +R+     V+ EGD + V +L  
Sbjct: 206 KVGDVVEGTVISVKPYGAFVDIGGA-SGLLHISQISHDRITNVDKVLSEGDRIKVMVLSQ 264

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG++ L  K ++   G
Sbjct: 265 DRERGRVALCTKKLEPTPG 283


>gi|164687500|ref|ZP_02211528.1| hypothetical protein CLOBAR_01141 [Clostridium bartlettii DSM
           16795]
 gi|164603274|gb|EDQ96739.1| hypothetical protein CLOBAR_01141 [Clostridium bartlettii DSM
           16795]
          Length = 423

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+ AR+   SI D  E  +   G+V K+M +GAF+      +GL HI+ LS +RV   
Sbjct: 219 ARIKEARQ---SIFDSLEEGQKIHGKVTKIMPYGAFIDIGEGLEGLAHINNLSWKRVESV 275

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            DVV EG  + V +L+ + +  +I L++K ++ +  K I
Sbjct: 276 EDVVAEGQELDVYVLEVNRENNRIALAVKDINNDPWKLI 314



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+VV+ ++ GAFV      +  + ISQLS  RV   + VV  GD +  K+L+F 
Sbjct: 320 VGDVITGKVVRTIERGAFVEIKEGVEAYLPISQLSENRVPTVNSVVNPGDEIEAKILNFQ 379

Query: 679 -DRGKIKLSMKVVD 691
            +  ++ +S+K V+
Sbjct: 380 PEEKRMLISIKEVN 393


>gi|229053908|ref|ZP_04195343.1| RNA binding S1 domain protein [Bacillus cereus AH603]
 gi|228721449|gb|EEL72969.1| RNA binding S1 domain protein [Bacillus cereus AH603]
          Length = 162

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|78188548|ref|YP_378886.1| 30S ribosomal protein S1 [Chlorobium chlorochromatii CaD3]
 gi|78170747|gb|ABB27843.1| SSU ribosomal protein S1P [Chlorobium chlorochromatii CaD3]
          Length = 592

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           N I+KG +  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 390 NSIHKGTISNITDFGVFVELESGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFD 449



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 8/102 (7%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AAR  EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 200 LEEAYAARREEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRI 254

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
              S+VV+    + V ++ FD+  K + L MK ++ +  + I
Sbjct: 255 NHPSEVVELDQPIKVVVVGFDENSKRVSLGMKQLESHPWENI 296



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV + D+GAFV      +GLVHIS++S T+ +      V  G  V   +L+ D +  
Sbjct: 307 QGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKEHT 366

Query: 682 KIKLSMKVVDQN 693
           K+ LSMK V ++
Sbjct: 367 KLSLSMKRVSED 378


>gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547]
 gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547]
          Length = 492

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V      V+ G  V+V+++D D
Sbjct: 290 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDID 349

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  +Q
Sbjct: 350 LERRRISLSLKQANQ 364



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  +++FGAFV   G  DGLVH+S+LS + +    +VV+ G  V V++LD D D
Sbjct: 207 QVRPGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDMD 265

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 266 RERVSLSLKATQED 279


>gi|254520533|ref|ZP_05132589.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914282|gb|EEH99483.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAFV   G + GLVHIS+++   V      + E D V VK++  DD G
Sbjct: 8   ILEGTVVNITSFGAFVEIEG-KTGLVHISEVADSFVKDIRQHLNEQDKVKVKVISIDDNG 66

Query: 682 KIKLSMKV--VDQNTGKPI 698
           KI LS+K   V + + KPI
Sbjct: 67  KISLSIKQANVQKKSVKPI 85


>gi|255072317|ref|XP_002499833.1| predicted protein [Micromonas sp. RCC299]
 gi|226515095|gb|ACO61091.1| predicted protein [Micromonas sp. RCC299]
          Length = 876

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           ++G+V  V  FGAFV      +GLVH++++S +     +D  K GD V VK+LD D   K
Sbjct: 261 FEGEVKSVQPFGAFVEIMEGVEGLVHVTEMSDDYNVDVADFCKVGDKVSVKVLDVDG-AK 319

Query: 683 IKLSMK 688
           +KL+MK
Sbjct: 320 VKLTMK 325



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK--EGDTVWVKLLDFDDRGKIKLS 686
           +V ++G FV F    DGLVHIS+L    V   +DVV   +  TVWVK +D  ++G+I L+
Sbjct: 153 RVQEYGCFVDFGAKNDGLVHISELKDGFVENVTDVVSADQAVTVWVKSIDA-EKGRISLT 211

Query: 687 MK 688
           MK
Sbjct: 212 MK 213


>gi|46199688|ref|YP_005355.1| S1 domain-containing protein [Thermus thermophilus HB27]
 gi|46197314|gb|AAS81728.1| S1 domain protein [Thermus thermophilus HB27]
          Length = 142

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           FGAFV   G   GLVHISQ++ E V    D + EGD V V +   D +G++ LS+K
Sbjct: 36  FGAFVELAGGEQGLVHISQIAHEYVTNVRDYLNEGDIVQVLIKGRDAKGRLDLSIK 91


>gi|321437419|gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group]
          Length = 415

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAFV   G  +GL+H+SQ+S +RV+  S V++ GDT+ V +L  D
Sbjct: 265 IGSVVLGTVQSLKPYGAFVDI-GGINGLLHVSQISHDRVSDISTVLQPGDTLKVMILSHD 323

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 324 RERGRVSLSTKKLEPTPG 341


>gi|311693191|gb|ADP96064.1| ribonuclease PH [marine bacterium HP15]
          Length = 238

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RD+       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASV----ENKVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +TG  SRMG  + R    GR      L  R++   +  TA   +++ I
Sbjct: 57  GWITAEYGMLPRSTG--SRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G  +AL+DA             P+ + VA +++G+ K      
Sbjct: 115 DCDVIQADGGTRTAAITGGCVALVDALNHLVADKRLKKSPLKQMVAALSVGVYKG----T 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  TD G
Sbjct: 171 PVVDLDYPEDSEAETDMNVIMTDQG 195


>gi|307709284|ref|ZP_07645742.1| protein tex [Streptococcus mitis SK564]
 gi|307619867|gb|EFN98985.1| protein tex [Streptococcus mitis SK564]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAF+      DGL+HIS +S + +   S VV  GD  TVWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFIDIGIHEDGLIHISHMSCKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|326389632|ref|ZP_08211198.1| Tex-like protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994347|gb|EGD52773.1| Tex-like protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 712

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVH S++S   +    DVV  GD V V++L  D +R +I
Sbjct: 648 GTVRNVTDFGCFVDIGVHTDGLVHFSEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|284008817|emb|CBA75581.1| ribonuclease PH [Arsenophonus nasoniae]
          Length = 237

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+++ VR I       +   GS L   GDT+ +   T+    DE     L G  +
Sbjct: 1   MRPENREADQVRPIKITRQYTKHAEGSVLIEFGDTKVLCNATI----DEGVPRFLKGQSQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRATNSRNIREAAKGKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA             P+   VA +++G+V DG     +
Sbjct: 117 DVIQADGGTRTAAISGACVALTDALNKMVAEGKLKQSPLKSMVAAVSVGIV-DGKP---I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED +   D  V   D+G
Sbjct: 173 CDLEYSEDSVAETDMNVVMMDNG 195


>gi|256848177|ref|ZP_05553621.1| transcription accessory protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715237|gb|EEU30214.1| transcription accessory protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 724

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHISQL+ + +     VV  GD V V +L  D DR +
Sbjct: 653 QGTVRNVVDFGAFVDIGVKHDGLVHISQLTKKFIRDPRQVVAVGDIVDVWVLSVDHDRQR 712

Query: 683 IKLSM 687
           I+L+M
Sbjct: 713 IQLTM 717


>gi|149201797|ref|ZP_01878771.1| S1 RNA binding domain protein [Roseovarius sp. TM1035]
 gi|149144845|gb|EDM32874.1| S1 RNA binding domain protein [Roseovarius sp. TM1035]
          Length = 775

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 LMEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDVAR 711

Query: 681 GKIKLSMK 688
            +I LSM+
Sbjct: 712 KRIGLSMR 719


>gi|297618203|ref|YP_003703362.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
 gi|297146040|gb|ADI02797.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
          Length = 241

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 26/248 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  +  R I+   G  +   GS L   GDT+ I   ++    +++    L GT   
Sbjct: 3   RTSGRAFDEPRPINIITGYTKFAPGSVLIETGDTRVICTASV----EDKVPPFLKGTGTG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP +T      EV+R G  S R     RL  RA+  V+  +A    T+ I  
Sbjct: 59  WVTAEYSMLPGSTPTRTAREVTR-GRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALM-------DAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL        ++G+    P++  VA  ++G+V+     I L
Sbjct: 118 DVIQADGGTRTASITGAFVALYLAMQKLKESGIIERLPVTDYVAATSVGIVRG----IPL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T+SG    +Q   +    S++ +   L+ AK+G   ++ + 
Sbjct: 174 LDLEYGEDSEAEVDMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQ 233

Query: 536 SKVLSESR 543
             VL   +
Sbjct: 234 KAVLGAEK 241


>gi|229491353|ref|ZP_04385177.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229321638|gb|EEN87435.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 779

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V VK+L+ D+ R +
Sbjct: 644 EGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPREVVKSGDVVKVKVLEVDEARQR 703

Query: 683 IKLSMKVVDQNTGKP 697
           I L+++ +D   G P
Sbjct: 704 IGLTLR-LDDEVGAP 717


>gi|227504779|ref|ZP_03934828.1| transcription accessory protein [Corynebacterium striatum ATCC
           6940]
 gi|227198629|gb|EEI78677.1| transcription accessory protein [Corynebacterium striatum ATCC
           6940]
          Length = 768

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ G  V VK+++ D  R
Sbjct: 643 ILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSNKFISDPHEVVRSGQVVKVKVMEVDVQR 702

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I LS++ +D   G+P
Sbjct: 703 QRIGLSLR-LDDEPGQP 718


>gi|159570408|emb|CAM19183.2| zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|159574246|emb|CAM25094.2| zinc finger, CCHC domain containing 17 [Mus musculus]
          Length = 199

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           LVH + +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 1   LVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 54


>gi|168056001|ref|XP_001780011.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668616|gb|EDQ55220.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 298

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           E   +Y G+V  V DFGAFV         +  GLVHIS+LS + V    D+++EG  V V
Sbjct: 105 EEGSVYNGKVNSVTDFGAFVDLALPDGTSSVSGLVHISELSWDPVRNPRDLLEEGQMVRV 164

Query: 673 KLLDFD-DRGKIKLSMK 688
           K++  D +R ++ LS+K
Sbjct: 165 KVIQLDKERKRLALSIK 181


>gi|302037201|ref|YP_003797523.1| ribonuclease PH [Candidatus Nitrospira defluvii]
 gi|300605265|emb|CBK41598.1| Ribonuclease PH [Candidatus Nitrospira defluvii]
          Length = 247

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +       +   GS L   GDT+ I   ++    +E+    L G    
Sbjct: 9   RIDGRRRDQIRPVKVTRNFTKHAEGSVLIEMGDTKVICTASI----EEKVPPFLKGKGAG 64

Query: 373 DFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT + S      G    R +   RL  RA+  V+        T+ I  +
Sbjct: 65  WVTAEYAMLPRATHDRSPRESVKGKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-GV----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL DA GV          P++  +A I++G V       ++ 
Sbjct: 125 VIQADGGTRTASITGSFIALADAVGVLRKKDLIKVNPLTDYLAAISIGKVGGQ----VMV 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED    +D  +  T +G
Sbjct: 181 DLAYEEDSHAEVDLNLVMTGAG 202


>gi|259047955|ref|ZP_05738356.1| S1 RNA-binding domain protein [Granulicatella adiacens ATCC 49175]
 gi|259035375|gb|EEW36630.1| S1 RNA-binding domain protein [Granulicatella adiacens ATCC 49175]
          Length = 164

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  + +FG FV     + GLVHIS++S   +    +V+K GD V VK++  
Sbjct: 4   EVGNVIPGKVTGITNFGVFVDLGDRKTGLVHISEVSDSFIQDIKEVLKVGDEVKVKVMTI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  ADDGKISLSIR 74


>gi|260941418|ref|XP_002614875.1| hypothetical protein CLUG_04890 [Clavispora lusitaniae ATCC 42720]
 gi|238851298|gb|EEQ40762.1| hypothetical protein CLUG_04890 [Clavispora lusitaniae ATCC 42720]
          Length = 1131

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKLLD 676
           V  + +G V  +  +GAFV       GL HIS++S +  RV    DVVK+   V+V++ D
Sbjct: 204 VGAVCRGTVSNITSYGAFVRLNRFESGLCHISKMSYDGRRVGSPGDVVKQNQEVFVRITD 263

Query: 677 FDD--RGKIKLSMKVVDQNTGK 696
                R KI LSM  VDQ  G+
Sbjct: 264 VGSGRRRKIALSMVGVDQTNGE 285


>gi|229824935|ref|ZP_04451004.1| hypothetical protein GCWU000182_00284 [Abiotrophia defectiva ATCC
           49176]
 gi|229790938|gb|EEP27052.1| hypothetical protein GCWU000182_00284 [Abiotrophia defectiva ATCC
           49176]
          Length = 305

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G+V ++ ++GAFV       GLVHISQ+S  R+    +VV E D V V + D  
Sbjct: 200 IGTVVTGKVERLENYGAFVRLPDGLSGLVHISQMSERRIKHPKEVVSENDEVKVMITDIK 259

Query: 679 DRGKIKLSM------KVVDQNTGKPI 698
           D GK+ LSM      +VVD     P+
Sbjct: 260 D-GKLSLSMTKAVESEVVDDTDSIPV 284


>gi|116790591|gb|ABK25672.1| unknown [Picea sitchensis]
          Length = 425

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAFV   G  +GL+H+SQ+S +RVA    +++ GDT+ V +L  D
Sbjct: 276 IGSVVLGTVQTIKPYGAFVDL-GGINGLLHVSQISHDRVADVGTILQPGDTLKVMILSHD 334

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 335 RERGRVSLSTKKLEPTPG 352


>gi|237733108|ref|ZP_04563589.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383790|gb|EEO33881.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 325

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHIS++S ER+    D +  GD V V ++D D ++ +
Sbjct: 259 EGTVRNVVDFGAFVDIGLKNDGLVHISKISHERIKHPLDKLSIGDIVEVYVIDVDVNKHR 318

Query: 683 IKLSM 687
           + LSM
Sbjct: 319 VGLSM 323


>gi|227513748|ref|ZP_03943797.1| S1 domain RNA-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227083067|gb|EEI18379.1| S1 domain RNA-binding protein [Lactobacillus buchneri ATCC 11577]
          Length = 722

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS++S   V   S +V  GD  TVW+  +D  +R 
Sbjct: 653 QGTVRNVVDFGAFVDIGVNQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDV-NRH 711

Query: 682 KIKLSM 687
           +I+LSM
Sbjct: 712 RIQLSM 717


>gi|94968822|ref|YP_590870.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550872|gb|ABF40796.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
          Length = 539

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV      +G+VH+S+LS +RV    DVVK G  V   +L  D ++
Sbjct: 360 VIEGPVTSVQKFGAFVQLTEGVEGMVHVSELSDKRVDHPQDVVKLGQRVQAMVLAIDPEK 419

Query: 681 GKIKLSMK 688
            +IKLSMK
Sbjct: 420 RQIKLSMK 427



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G V ++MDFGAFV      +G++H+S++S  ++V K SD++K GD+V   +L  +   K
Sbjct: 275 RGTVSRLMDFGAFVELEPGIEGMIHVSEMSWAKKVRKPSDLLKTGDSVEAVILGINPAEK 334

Query: 683 -IKLSMKVVDQNTGKP 697
            I L +K   Q  G P
Sbjct: 335 RIALGLK---QALGDP 347



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  D L+H++++S  RV   +DV+  G  V  K++  D ++ +I
Sbjct: 191 GTVRSLADYGAFVDIGGV-DALLHVAEISWSRVNSPADVLTVGQEVEAKVIKVDPEKRRI 249

Query: 684 KLSMK 688
            LSMK
Sbjct: 250 SLSMK 254


>gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4]
          Length = 757

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  + D+ E   I +G V  V  FGAFV     +DGLVH+S L+   V   ++ VK 
Sbjct: 637 REDVTELGDLQE-GMILQGTVTNVTAFGAFVDIGVHQDGLVHVSHLAQRFVKDPNEAVKV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V VK+L  D  R +I LS+K  +   G
Sbjct: 696 GQIVKVKVLSVDLQRKRIALSIKEAEPANG 725


>gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
 gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
          Length = 234

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 22/202 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +RD++ ++G+ +   GS L   G+T  +   +     +E     L   +R
Sbjct: 1   MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASF----EENVPPWLKNQRR 56

Query: 372 NDFMMHYNFLPCAT---GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y+ LP AT   G   R   PS R     RL  R++  V+   A     +++  +
Sbjct: 57  GWVTAEYSMLPRATHTRGRRERDKGPSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCD 116

Query: 429 ITESDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +AL       + AGV    P++  VA I+ GL         + 
Sbjct: 117 VLQADGGTRTASITGGYVALKQAIDWALSAGVLTTSPLTDSVAAISCGLYNRAP----VV 172

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  DED     D     T +G
Sbjct: 173 DLDYDEDSTAQADANFVFTGTG 194


>gi|255546407|ref|XP_002514263.1| elongation factor ts, putative [Ricinus communis]
 gi|223546719|gb|EEF48217.1| elongation factor ts, putative [Ricinus communis]
          Length = 972

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAFV F    DGLVH+S+LS   V    +VV  G  V V+L++ + + G
Sbjct: 154 FTGKVRSIQPFGAFVDFGAFTDGLVHVSRLSDNFVKDVGNVVSVGQEVTVRLVEANTETG 213

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 214 RISLTMRESD 223


>gi|210620714|ref|ZP_03292200.1| hypothetical protein CLOHIR_00143 [Clostridium hiranonis DSM 13275]
 gi|210155215|gb|EEA86221.1| hypothetical protein CLOHIR_00143 [Clostridium hiranonis DSM 13275]
          Length = 423

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++  A ++A +E   ++ D  EV +  +G+V K+M +GAFV   G  +GLVH + LS +R
Sbjct: 212 AAERARVKAEKE---AMFDALEVGQKKEGKVTKIMQYGAFVDIGGI-EGLVHRNNLSWDR 267

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
           V    D V EG  V V +L+ D    K  L++K ++ +  K
Sbjct: 268 VENVEDFVTEGQEVEVYVLNIDQENRKFGLALKDINNDPWK 308



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V+++++ GAFV    + +  + IS+LS +RV K  +VV EGD + VK+++F
Sbjct: 323 EVLRIIESGAFVKVRESVEAYLPISELSEDRVLKVQNVVNEGDEIKVKVIEF 374


>gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8]
 gi|166228289|sp|A1TY30|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8]
          Length = 238

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RD+       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASV----ENKVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +TG  SRMG  + R    GR      L  R++   +   A   +T+ I
Sbjct: 57  GWITAEYGMLPRSTG--SRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G  +AL+DA             P+ + VA +++G+ +      
Sbjct: 115 DCDVIQADGGTRTAAITGGCVALVDALNHLVKEKRLKKSPLKQMVAAVSVGVYRG----T 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            ++D+   ED     D  V  TD G
Sbjct: 171 PVADLDYPEDSEAETDMNVIMTDQG 195


>gi|226943704|ref|YP_002798777.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
 gi|226718631|gb|ACO77802.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
          Length = 559

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 231 PSEIVNVGDEIDVKVLKFDRERNRVSLGLK 260



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTRVM-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCKSN 352


>gi|320107706|ref|YP_004183296.1| RNA-binding S1 domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319926227|gb|ADV83302.1| RNA binding S1 domain protein [Terriglobus saanensis SP1PR4]
          Length = 594

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLD 676
           +V  + +G VV +M FGAFV       GLVHIS+++ E R+   SDV++ G+ V  ++L+
Sbjct: 397 KVGSVVEGPVVTIMKFGAFVQIAEGVQGLVHISEITAERRLNHPSDVLRVGEVVKAQVLE 456

Query: 677 FD-DRGKIKLSMK 688
            D ++ +++LS+K
Sbjct: 457 IDKEKRQLRLSIK 469



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  + D+GAF+   G  DGL+H+S ++  R+   SDV++ G TV VK+L  D   
Sbjct: 229 IVDGTVRSLADYGAFIDLGGI-DGLLHVSDMAWSRIGNPSDVLEVGQTVQVKVLKIDPES 287

Query: 682 -KIKLSMK 688
            +I L +K
Sbjct: 288 RRISLGLK 295



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 7/79 (8%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDR 680
           +G V +  +FGAFV      +GLVH+S++S ++R+ K ++V+  GDTV   +L    +DR
Sbjct: 316 RGTVTRTAEFGAFVEIAPGIEGLVHLSEMSWSKRIHKATEVLNVGDTVDALILAIGVEDR 375

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            +I L +K   Q  G P V
Sbjct: 376 -RISLGLK---QALGDPWV 390


>gi|226305942|ref|YP_002765902.1| transcriptional accessory protein [Rhodococcus erythropolis PR4]
 gi|226185059|dbj|BAH33163.1| putative transcriptional accessory protein [Rhodococcus
           erythropolis PR4]
          Length = 783

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V VK+L+ D+ R +
Sbjct: 644 EGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPREVVKSGDVVKVKVLEVDEARQR 703

Query: 683 IKLSMKVVDQNTGKP 697
           I L+++ +D   G P
Sbjct: 704 IGLTLR-LDDEVGAP 717


>gi|255283228|ref|ZP_05347783.1| protein YhgF [Bryantella formatexigens DSM 14469]
 gi|255266301|gb|EET59506.1| protein YhgF [Bryantella formatexigens DSM 14469]
          Length = 724

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I +G V  V+DFG FV     +DGLVHISQ++ ++  K   + V  GD V VK+L  D  
Sbjct: 655 ILRGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKHPLEAVSVGDIVEVKVLSVDIG 714

Query: 680 RGKIKLSMKV 689
           R +I+L+MK+
Sbjct: 715 RKRIQLTMKI 724


>gi|133872|sp|P29344|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
           Full=CS1; Flags: Precursor
 gi|18060|emb|CAA46927.1| ribosomal protein S1 [Spinacia oleracea]
 gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1 [Spinacia oleracea]
          Length = 411

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 260 IGSVVTGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 318

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 319 RERGRVSLSTKKLEPTPG 336


>gi|313904089|ref|ZP_07837469.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
 gi|313471238|gb|EFR66560.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
          Length = 362

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 8/91 (8%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A  E+   IT    V  + +G V  + DFGAF+   GA DGL+HIS++S  RV     +
Sbjct: 182 KAQEELFSHIT----VGDVVEGVVKNITDFGAFIDLGGA-DGLLHISEMSWGRVDNPKSI 236

Query: 664 VKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693
           V  GD   +K+L  D +G +I LS+K  DQN
Sbjct: 237 VAVGDK--IKVLIKDIKGDRIALSLKFEDQN 265



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S + V K +DV+  G  +  +++DF+
Sbjct: 276 VGTVVTGKVARMTDFGAFVELEPGIDALLHVSQISRDHVDKPADVLAIGQDITAEIVDFN 335

Query: 679 --DRGKIKLSMKVVD 691
             DR KI LS+K ++
Sbjct: 336 AADR-KISLSVKALE 349


>gi|110834606|ref|YP_693465.1| 30S ribosomal protein S1 [Alcanivorax borkumensis SK2]
 gi|110647717|emb|CAL17193.1| 30S ribosomal protein S1 [Alcanivorax borkumensis SK2]
          Length = 560

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 29/202 (14%)

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE--------- 554
           ++D+ +  I + +    L + K  R  +  E+ K   E  +  G  + +V+         
Sbjct: 67  EVDVAVDAIDDGMGFTRLSREKAKRAEVWGELEKAFDEDEIVKGMISGKVKGGFTVDIGP 126

Query: 555 IMAIPPDQ------IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE--AA 606
           I A  P        +R+V  + GK +   V +   K N      V ++  ++ E E  A 
Sbjct: 127 IRAFLPGSLVDIRPVRDVAHLEGKELDFKVIKLDPKRN-----NVVVSRRAVMEAEHSAE 181

Query: 607 RE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE ++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+
Sbjct: 182 REQLLESLQEGMEV----KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEIVE 236

Query: 666 EGDTVWVKLLDFDDRGKIKLSM 687
            G  + VK+L F DR K+++S+
Sbjct: 237 VGQEIDVKVLKF-DREKMRVSL 257



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTRV-KAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVEIGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D DR +I L +K    N
Sbjct: 334 DIDEDRRRISLGIKQCQSN 352


>gi|47097081|ref|ZP_00234651.1| ribosomal protein S1, putative [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47014526|gb|EAL05489.1| ribosomal protein S1, putative [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 355

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 220 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 277

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQ+S + +A   +V++EG  V VK++  D +  +I LS+K
Sbjct: 278 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 318


>gi|330469194|ref|YP_004406937.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032]
 gi|328812165|gb|AEB46337.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032]
          Length = 495

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V VK++D D
Sbjct: 296 IQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEVMVKVIDID 355

Query: 679 -DRGKIKLSMKVVDQ 692
            +R +I LS+K  ++
Sbjct: 356 LERRRISLSLKQANE 370



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 7/84 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNKLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVEVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGK 696
           +LD D DR ++ LS+K   ++  +
Sbjct: 265 VLDVDLDRERVSLSLKATQEDPWR 288


>gi|327480937|gb|AEA84247.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 4166]
          Length = 560

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 231 PSEIVNVGDEIDVKVLKFDRERNRVSLGLK 260



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTRVM-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCKSN 352


>gi|307265607|ref|ZP_07547161.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919405|gb|EFN49625.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 88

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVHIS++S   +    DVV  GD V V++L  D +R +I
Sbjct: 24  GTVRNVTDFGCFVDIGVHTDGLVHISEMSQGYIKHPLDVVSVGDIVKVRVLSVDIERNRI 83

Query: 684 KLSMK 688
            LSMK
Sbjct: 84  SLSMK 88


>gi|302336447|ref|YP_003801654.1| RNAse PH [Olsenella uli DSM 7084]
 gi|301320287|gb|ADK68774.1| RNAse PH [Olsenella uli DSM 7084]
          Length = 267

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 23/209 (11%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           TV +    R  GR ++ +R       +++   GS L   GDT+ I   T+     E+ V 
Sbjct: 23  TVQVPSLTRSYGRAADQMRPAKLTRDIMKNADGSCLAEFGDTRVICTATV-----EEGVP 77

Query: 365 SLSGTQRNDFM-MHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPY 421
           +     R  ++   Y  LP +T   SR     R  R +   RL  R++  V+        
Sbjct: 78  AWRKGSRAGWVSAEYAMLPASTSTRSRREYKGRKGRSMEIERLIGRSLRAVVDLHRLGEL 137

Query: 422 TLRIVSEITESDGSSSMATVCGSSLAL-------MDAG----VPISKPVAGIAMGLVKDG 470
           T+    ++ ++DG +  A++ G+ +AL       +DAG    +P++  VA I+MG+V   
Sbjct: 138 TVICDCDVIQADGGTRTASITGAWVALHDALMASVDAGRLARLPLTGQVAAISMGMV--- 194

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            D  +L D+   ED    +D  + GTD+G
Sbjct: 195 -DGSLLLDLDYPEDSHAQVDMNLVGTDAG 222



 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 38/204 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD------------FFPLTV 61
           RP KL T  I + +DG+ LA +G+T V+ T   +  +   +               P + 
Sbjct: 41  RPAKL-TRDIMKNADGSCLAEFGDTRVICTATVEEGVPAWRKGSRAGWVSAEYAMLPAST 99

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQ 119
           + + R          Y  R+ R  E    I R+I RS+R +       E  VI   +V+Q
Sbjct: 100 STRSRRE--------YKGRKGRSME----IERLIGRSLRAVVDLHRLGELTVICDCDVIQ 147

Query: 120 HD--LESSPHVVSMVAASAALM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
            D    ++    + VA   ALM       L+ LP  G V    +  ++G  +L+    ED
Sbjct: 148 ADGGTRTASITGAWVALHDALMASVDAGRLARLPLTGQVAAISMGMVDGSLLLDLDYPED 207

Query: 171 -QGSLDLFVSGTQDAVLMVELEAN 193
               +D+ + GT DA  +VE++  
Sbjct: 208 SHAQVDMNLVGT-DAGGIVEVQGT 230


>gi|309790392|ref|ZP_07684957.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
           DG6]
 gi|308227584|gb|EFO81247.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
           DG6]
          Length = 381

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ +FGAF+   GA DGL HIS+LS +RV    +V+  G  V V +++ D DR
Sbjct: 208 VLSGRVNQLTNFGAFIDLGGA-DGLAHISELSWQRVNHPREVLSPGQEVKVVVVEIDRDR 266

Query: 681 GKIKLSMKVVDQN 693
            +I LS++ +  N
Sbjct: 267 ERIGLSLRQLQAN 279



 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G V  V  FGAFV    A +GL+H S+L  +   +  DV++ G  V  K++  D
Sbjct: 290 LGQLVSGPVTNVTPFGAFVQVEDAVEGLIHASELDVDPQTQPRDVLQPGQQVTAKVISLD 349

Query: 679 -DRGKIKLSMKVVDQ 692
             R ++ LS++ V +
Sbjct: 350 RQRQRMGLSLRRVSE 364


>gi|295108633|emb|CBL22586.1| Ribosomal protein S1 [Ruminococcus obeum A2-162]
          Length = 301

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)

Query: 605 AAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +A+E++R+  +    NK+         +G V  +  +GAFV       GLVHISQ+  +R
Sbjct: 173 SAKEILRAKAEEERKNKVSNLEIGLVTEGTVESLQPYGAFVDLGNGLSGLVHISQICEKR 232

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + K S+V+  GD V VK+    D GK+ LS+K
Sbjct: 233 IKKPSEVLAVGDKVKVKVTAIKD-GKLSLSIK 263


>gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4]
 gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4]
          Length = 238

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  G+D  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|163938069|ref|YP_001642953.1| hypothetical protein BcerKBAB4_0056 [Bacillus weihenstephanensis
           KBAB4]
 gi|229009571|ref|ZP_04166798.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
 gi|229131069|ref|ZP_04259982.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|229165050|ref|ZP_04292846.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|163860266|gb|ABY41325.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228618435|gb|EEK75464.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|228652406|gb|EEL08330.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|228751715|gb|EEM01514.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
          Length = 161

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|189345892|ref|YP_001942421.1| 30S ribosomal protein S1 [Chlorobium limicola DSM 245]
 gi|189340039|gb|ACD89442.1| RNA binding S1 domain protein [Chlorobium limicola DSM 245]
          Length = 586

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           N ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 390 NSLHKGTVSNITDFGVFVELEAGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFD 449



 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S T+ +      V  G  V   +L+ D +  K
Sbjct: 308 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKEHTK 367

Query: 683 IKLSMKVVDQN 693
           + LSMK V+++
Sbjct: 368 LSLSMKRVNED 378



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV+    + V ++ F
Sbjct: 216 KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVVVGF 274

Query: 678 DDRGK-IKLSMKVVDQNTGKPI 698
           D+  K + L MK ++ +  + I
Sbjct: 275 DENTKRVSLGMKQLESHPWENI 296


>gi|331268347|ref|YP_004394839.1| RNA binding S1 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329124897|gb|AEB74842.1| RNA binding S1 domain protein [Clostridium botulinum BKT015925]
          Length = 136

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  DD G
Sbjct: 8   ILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISVDDSG 66

Query: 682 KIKLSMK--VVDQNTGKPI 698
           ++ LS+K  +  + + KP+
Sbjct: 67  RLSLSIKQAMPSRKSAKPV 85


>gi|268679707|ref|YP_003304138.1| Tex-like protein protein-like protein [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617738|gb|ACZ12103.1| Tex-like protein protein-like protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 704

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 613 ITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK-EGDT 669
           +TD+ E+++  I  G V  + DFGAFV      DGL+HISQ+S +R+A   +V+      
Sbjct: 623 LTDISELSEGSIVSGVVRNIADFGAFVDIGLKNDGLIHISQMSEKRIAHPLEVLSINQQL 682

Query: 670 VWVKLLDFD-DRGKIKLSMKVV 690
             +++L+ D ++GK+ LS+K +
Sbjct: 683 TRIRVLEVDKEKGKVSLSLKEI 704


>gi|223995207|ref|XP_002287287.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976403|gb|EED94730.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 348

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-DRGK 682
           G VV V DFGAF++   A  GL+HISQ+   RVA  ++V K GDTV   ++++ D  +G+
Sbjct: 142 GTVVDVCDFGAFINIGYASRGLLHISQIQDTRVANINNVFKVGDTVEGARVINVDLAKGE 201

Query: 683 IKLSMK 688
           + LS++
Sbjct: 202 VGLSLR 207



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G+V  V+ +G FV    + + L+HIS+++   +      + EGD V V ++D 
Sbjct: 220 KVGDTLEGKVDSVVSYGVFVDVGASTNALLHISRITGSAIENIRHHLNEGDPVSVHVIDI 279

Query: 678 D-DRGKIKLSM--KVVDQ 692
           D +R  + +SM  K  DQ
Sbjct: 280 DVERKTMAVSMLDKKADQ 297


>gi|149918403|ref|ZP_01906893.1| hypothetical protein PPSIR1_35722 [Plesiocystis pacifica SIR-1]
 gi|149820703|gb|EDM80113.1| hypothetical protein PPSIR1_35722 [Plesiocystis pacifica SIR-1]
          Length = 793

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 601 AEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           AE EA   R+ +  ++D+ E     +G V  V  FGAFV     +DGLVH+S+LS + V 
Sbjct: 635 AEFEAPQFRDDVHEMSDLEE-GMALEGVVTNVTKFGAFVDVGVHQDGLVHVSELSDKWVD 693

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             S VVK GD + V++L  D +R +I LS +
Sbjct: 694 DPSKVVKVGDKLKVRVLSVDLERKRIALSAR 724


>gi|110741951|dbj|BAE98916.1| hypothetical protein [Arabidopsis thaliana]
          Length = 631

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D +  
Sbjct: 139 FTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 199 RISLTMREND 208


>gi|312143229|ref|YP_003994675.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
 gi|311903880|gb|ADQ14321.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
          Length = 239

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+ + +RDI       +   GS L   GDT  +  V++    ++     L G   
Sbjct: 1   MRNDGRELDQLRDIQITRDFTKYAEGSVLVETGDTMVLCNVSI----EDSVPYFLRGQNT 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +   A  R+  G      RL  R++  ++        T+ +  
Sbjct: 57  GWLTAEYSLLPRATQDRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   +A  ++G+V+       +
Sbjct: 117 DVLQADGGTRTASITGAYVALVDAVNFLLAEGKLSENPLKDFMAATSVGIVEGK----AM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +A T++G
Sbjct: 173 LDLCYEEDFRAQVDMNIAMTENG 195


>gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 29/212 (13%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R DGR ++ +R+I+ +    ++  GS+L   G T+ +   +   R         
Sbjct: 1   MTDDTPRHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNRVPRWK---- 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           +G+ +      Y  LP AT E  RM      G    R     RL  R++  V+   A   
Sbjct: 57  AGSGQGWVTAEYAMLPRATNE--RMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGE 114

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLV 467
            T+ I  ++ ++DG +  A + G+ +AL DA               P+   VA +++G+V
Sbjct: 115 NTIVIDCDVLQADGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIV 174

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            DG   + L+ +   ED     D  V  T SG
Sbjct: 175 -DGKPLLDLAYV---EDVRAETDMNVVMTGSG 202


>gi|258422935|ref|ZP_05685835.1| S1 domain RNA-binding protein [Staphylococcus aureus A9635]
 gi|257846959|gb|EEV70973.1| S1 domain RNA-binding protein [Staphylococcus aureus A9635]
          Length = 716

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|238060171|ref|ZP_04604880.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149]
 gi|237881982|gb|EEP70810.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149]
          Length = 497

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V
Sbjct: 288 RQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEV 347

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            VK++D D +R +I LS+K  ++
Sbjct: 348 MVKVIDIDLERRRISLSLKQANE 370



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNKLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVEVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 265 VLDVDLDRERVSLSLKATQED 285


>gi|225572946|ref|ZP_03781701.1| hypothetical protein RUMHYD_01137 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039692|gb|EEG49938.1| hypothetical protein RUMHYD_01137 [Blautia hydrogenotrophica DSM
           10507]
          Length = 717

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 8/88 (9%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM R I  TDV E+  + +G V+K     V+DFGAFV     +DGLVHIS+++   +   
Sbjct: 627 EMPRPILRTDVLEMKDLEEGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISKMTKRYIKHP 686

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + V  GD V VK++  D  + +I LSM
Sbjct: 687 LEAVSVGDVVEVKVISVDLQKKRIGLSM 714


>gi|73669079|ref|YP_305094.1| translation initiation factor IF-2 subunit alpha [Methanosarcina
           barkeri str. Fusaro]
 gi|72396241|gb|AAZ70514.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanosarcina barkeri str. Fusaro]
          Length = 268

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + PEV +     V  V DFGA+V     G R+G +HIS++    V    D V+EG  +  
Sbjct: 5   NWPEVGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVREGQKIVC 64

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
           K+L+ D  RG I LS+K V+++
Sbjct: 65  KVLNVDPSRGHIDLSLKDVNEH 86


>gi|330830010|ref|YP_004392962.1| 30S ribosomal subunit protein S1 [Aeromonas veronii B565]
 gi|328805146|gb|AEB50345.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
           component of the degradosome [Aeromonas veronii B565]
          Length = 556

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E   E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIETENTSERESLLANLQEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLK 260



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGVKQIEED 439


>gi|319652776|ref|ZP_08006884.1| hypothetical protein HMPREF1013_03499 [Bacillus sp. 2_A_57_CT2]
 gi|317395541|gb|EFV76271.1| hypothetical protein HMPREF1013_03499 [Bacillus sp. 2_A_57_CT2]
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 4   EIGSKVQGKVTGITNFGAFVELPGGTTGLVHISEVADSYVKDVNEHLKVGDEVTVKVLS- 62

Query: 678 DDRGKIKLSM-KVVDQNTGK 696
           +  GKI LS+ K VD+  G+
Sbjct: 63  EKEGKIALSIKKAVDRPEGQ 82


>gi|255325252|ref|ZP_05366358.1| transcriptional accessory protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297817|gb|EET77128.1| transcriptional accessory protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 778

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+     I +G V  V  FGAFV     +DGLVH+S +S + V+   +VV+ 
Sbjct: 628 KEGVHKVSDLTP-GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHKFVSDPHEVVRS 686

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V VK+++ D +R +I LS + +D   G+P
Sbjct: 687 GQVVKVKVMEVDVERQRIGLSFR-LDDEPGQP 717


>gi|298529708|ref|ZP_07017111.1| ribosomal protein S1 [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511144|gb|EFI35047.1| ribosomal protein S1 [Desulfonatronospira thiodismutans ASO3-1]
          Length = 582

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVHIS++S T ++   S +VK GD V V +L  D DR +
Sbjct: 299 GKVTNLADYGAFVELDDGVEGLVHISEMSWTRKLRHPSQLVKSGDEVEVVVLGIDSDRKR 358

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 359 ISLGMKQVSPN 369



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E  RE +R  + D  +  ++ +G+V  + ++G F+   G  DGL+HI+ +S +R+    
Sbjct: 191 LEEERENMRQELLDTIKEGQVVQGKVKNITEYGVFIDLGGL-DGLLHITDMSWKRIRHPK 249

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++V+ GD + +K+L FD +  K+ L +K
Sbjct: 250 EMVQLGDDLELKVLGFDSEEKKVSLGLK 277



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 610 IRSITDVP--EVNKIY------KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           I+ +T+ P  EV + Y       G++  + DFG FV      +GLVH+S++S +++    
Sbjct: 450 IKQLTEDPWAEVPRHYPVGTTVTGKITNITDFGLFVEVEEGIEGLVHVSEMSRKKIKNPK 509

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +   EG  +  K++    D  ++ LS+K
Sbjct: 510 EFFSEGQEIQAKVIHVSADERRLGLSIK 537



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +  V  + +FG F+      DGL+H+S +S T++V   S++ K GD V  K+L  D
Sbjct: 383 ILEAPVKNITEFGLFIGIEDGIDGLIHVSDMSWTKKVRHPSELFKNGDMVRAKVLTVD 440


>gi|150402305|ref|YP_001329599.1| RNA-binding S1 domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033335|gb|ABR65448.1| RNA binding S1 domain protein [Methanococcus maripaludis C7]
          Length = 713

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  ++DFGAF+      DGL HIS++S   +    DV+  GD V V ++D D D+
Sbjct: 643 ILKGTVRNIVDFGAFIDIGVHHDGLAHISEISDRFIKHPLDVISVGDIVDVMVMDIDFDK 702

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 703 KRVSLSIK 710


>gi|312623023|ref|YP_004024636.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203490|gb|ADQ46817.1| RNA binding S1 domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 120

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++  + G
Sbjct: 8   ILEGIVKGITQFGAFVELPSGKVGLVHISEVAYEYVEDIKKYLKENQTVKVKVINVKEDG 67

Query: 682 KIKLSMKVVDQ 692
           KI LS+K V++
Sbjct: 68  KISLSIKRVNE 78


>gi|311031149|ref|ZP_07709239.1| S1 RNA binding domain protein [Bacillus sp. m3-13]
          Length = 728

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD  TVWV  ++  ++G
Sbjct: 656 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSDRFVKHPLDVVSVGDIVTVWVDGVEV-NKG 714

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 715 RVSLTM 720


>gi|309388890|gb|ADO76770.1| RNAse PH [Halanaerobium praevalens DSM 2228]
          Length = 239

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 26/245 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R+I       +   GS L   GDT  +  V++    ++     L G  +
Sbjct: 1   MRTDGREYNQLREIEITRNYTKYAEGSVLIETGDTMVLCNVSI----EDSVPYFLRGQNK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +   A  R+  G      RL  R++  ++        T+ +  
Sbjct: 57  GWLTAEYSLLPRATQSRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL+D G+            P+   +A  ++GLVK G+  + 
Sbjct: 117 DVLQADGGTRTAAITGAFVALVD-GINFLLAEGKIEENPLKGYMAATSVGLVK-GEALL- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             D+  +ED    +D  +  T++G I  +Q   +    S   +    + A++G L ++ E
Sbjct: 174 --DLCYEEDSQAQVDMNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEE 231

Query: 535 MSKVL 539
              VL
Sbjct: 232 QKLVL 236


>gi|302333710|gb|ADL23903.1| transcription accessory protein (S1 RNA binding) [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|298695338|gb|ADI98560.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323439221|gb|EGA96948.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O11]
 gi|323442401|gb|EGB00030.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O46]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|297617653|ref|YP_003702812.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145490|gb|ADI02247.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 646

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  E+EA  EM  S+    +   +  G V++V D    V   G  +G++ + +LS   V+
Sbjct: 278 SFVEMEA--EMAESLGKGMDRGSVVTGVVIQVTDDEVMVDVGGKSEGVIPLRELSVRDVS 335

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
              +VVKEGDT+ V +L +DD G I LS K VD
Sbjct: 336 SAKEVVKEGDTIEVYVLRWDDDGTILLSKKRVD 368



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           IE      +   D  E  +I +G V ++ D+GAF+   G  +GL+HIS+++  RV   S 
Sbjct: 455 IEEKERKRKEFWDNIEEGQIRQGVVKRLTDYGAFIDLDGY-EGLLHISEMAHSRVEHPSQ 513

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+ EG  + V +L  D ++ ++ LS K
Sbjct: 514 VLTEGSVIEVYVLGVDREKERVSLSRK 540



 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           +  G+VV+   FG FV      DGLVHISQLS +RV K
Sbjct: 559 VVAGKVVRTAPFGVFVELEPGVDGLVHISQLSRKRVDK 596


>gi|283771231|ref|ZP_06344120.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283459436|gb|EFC06529.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|282866057|ref|ZP_06275105.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
 gi|282559096|gb|EFB64650.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
          Length = 814

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  I D+ PE+  + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK
Sbjct: 640 KEGVEKIGDLAPEM--VLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSRTFVKDPRDVVK 697

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            GD V VK+ + D  R +I L++++ D+
Sbjct: 698 PGDIVKVKVREVDIPRKRISLTLRLDDE 725


>gi|167756510|ref|ZP_02428637.1| hypothetical protein CLORAM_02047 [Clostridium ramosum DSM 1402]
 gi|167702685|gb|EDS17264.1| hypothetical protein CLORAM_02047 [Clostridium ramosum DSM 1402]
          Length = 713

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHIS++S ER+    D +  GD V V ++D D ++ +
Sbjct: 647 EGTVRNVVDFGAFVDIGLKNDGLVHISKISHERIKHPLDKLSIGDIVEVYVIDVDVNKHR 706

Query: 683 IKLSM 687
           + LSM
Sbjct: 707 VGLSM 711


>gi|322388030|ref|ZP_08061636.1| 30S ribosomal protein S1 [Streptococcus infantis ATCC 700779]
 gi|321141051|gb|EFX36550.1| 30S ribosomal protein S1 [Streptococcus infantis ATCC 700779]
          Length = 400

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G  V VK+LD + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+LD + + 
Sbjct: 196 VVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEVEVKILDLNEEE 254

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 255 GRVSLSLK 262


>gi|311069329|ref|YP_003974252.1| ribonuclease PH [Bacillus atrophaeus 1942]
 gi|310869846|gb|ADP33321.1| ribonuclease PH [Bacillus atrophaeus 1942]
          Length = 245

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ +GV    P++  +A I++G+ K+     +L
Sbjct: 117 DVIQADGGTRTASITGAFLAMGIAIGKLVKSGVLKKTPVTDFLAAISVGIDKEQG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T SG
Sbjct: 174 LDLNYTEDSAAEVDMNVIMTGSG 196


>gi|291166598|gb|EFE28644.1| general stress protein 13 [Filifactor alocis ATCC 35896]
          Length = 139

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G++ ++  FGAFV       GLVHISQ+S   V   ++V+  GD V VK+L  +
Sbjct: 7   VGNIVEGKISQIKPFGAFVQLDATTRGLVHISQVSHNFVKDINEVISVGDEVKVKILSIE 66

Query: 679 DRG-KIKLSMK 688
           + G KI LS+K
Sbjct: 67  EDGKKISLSIK 77


>gi|203284053|ref|YP_002221793.1| 30S ribosomal protein S1 [Borrelia duttonii Ly]
 gi|201083496|gb|ACH93087.1| 30S ribosomal protein S1 [Borrelia duttonii Ly]
          Length = 555

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 9/125 (7%)

Query: 578 VEQTGAKVNIDDDGTVKI--ASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKV 630
           VE     +++DD   +KI   S++  ++E + + ++     S+    +V  I KG++VK+
Sbjct: 225 VENVEDFIHVDDKLRLKIIKLSTNTGKMELSLKALKVNPWDSVESKYKVESIVKGKIVKI 284

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + FGA V    A  G +HIS  S  R  K+  ++VK G  V VK+L+ D +  KI L +K
Sbjct: 285 LPFGAVVELDSAISGFLHISNFSWVRSIKSPQELVKVGQIVEVKILEIDKENQKISLGIK 344

Query: 689 VVDQN 693
            V++N
Sbjct: 345 QVNEN 349


>gi|322392120|ref|ZP_08065582.1| 30S ribosomal protein S1 [Streptococcus peroris ATCC 700780]
 gi|321145020|gb|EFX40419.1| 30S ribosomal protein S1 [Streptococcus peroris ATCC 700780]
          Length = 400

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G  V VK+LD + D 
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQEVTVKVLDVNADA 340

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K +++
Sbjct: 341 ERVSLSIKALEE 352



 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSVVTVGEEVEVKILDLN 251

Query: 679 -DRGKIKLSMK 688
            + G++ LS+K
Sbjct: 252 EEEGRVSLSLK 262


>gi|294497072|ref|YP_003560772.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|294347009|gb|ADE67338.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
          Length = 724

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+     +DGLVHIS+L+   V    DVV  GD   VWV+ +D   +G
Sbjct: 655 EGTVRNVVDFGAFIDIGVKQDGLVHISKLTNRYVKHPLDVVSVGDLVNVWVEDVDM-KKG 713

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 714 RVALTM 719


>gi|283471279|emb|CAQ50490.1| protein YhgF [Staphylococcus aureus subsp. aureus ST398]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|261821283|ref|YP_003259389.1| 30S ribosomal protein S1 [Pectobacterium wasabiae WPP163]
 gi|261605296|gb|ACX87782.1| ribosomal protein S1 [Pectobacterium wasabiae WPP163]
          Length = 565

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 204 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 262

Query: 683 IKLSMK 688
           + L +K
Sbjct: 263 VSLGLK 268



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G++  + DFG F+   G  DGLVH+S +S   V + +    K+GD +   +L  D +R 
Sbjct: 376 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVVGEEAVREYKKGDEIAAVVLQVDAERE 435

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 436 RISLGVK 442


>gi|253751564|ref|YP_003024705.1| 30S ribosomal protein S1 [Streptococcus suis SC84]
 gi|253753465|ref|YP_003026606.1| 30S ribosomal protein S1 [Streptococcus suis P1/7]
 gi|251815853|emb|CAZ51463.1| putative 30S ribosomal protein S1 [Streptococcus suis SC84]
 gi|251819711|emb|CAR45541.1| putative 30S ribosomal protein S1 [Streptococcus suis P1/7]
 gi|292558214|gb|ADE31215.1| ribosomal protein S1 [Streptococcus suis GZ1]
 gi|319757998|gb|ADV69940.1| putative 30S ribosomal protein S1 [Streptococcus suis JS14]
          Length = 401

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D +  G  V VK+L+    D
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G+V ++  FGAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D
Sbjct: 193 VGEVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAID 251

Query: 679 D-RGKIKLSMK 688
           +  G++ LS+K
Sbjct: 252 EVEGRVSLSLK 262


>gi|229170912|ref|ZP_04298515.1| RNA binding S1 domain protein [Bacillus cereus MM3]
 gi|228612578|gb|EEK69797.1| RNA binding S1 domain protein [Bacillus cereus MM3]
          Length = 162

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|254974534|ref|ZP_05271006.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-66c26]
 gi|255313657|ref|ZP_05355240.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-76w55]
          Length = 421

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+AA+E    + +  EV +   G+V K+M +GAFV   G  +GL HI+ L+  RV   
Sbjct: 215 ARIKAAKE---DLFNSLEVGQKRDGKVTKIMPYGAFVDIGGI-EGLAHINNLAWTRVESV 270

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            DVV EG  V V +LD + +  KI L++K ++ +
Sbjct: 271 EDVVSEGQEVEVYVLDVNKETKKIALALKDINND 304



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +++ +   +V+++++ GAFV      D  + IS+LS  RVAK ++VV  GD V VK+LDF
Sbjct: 314 QIDDVVNAKVLRIIEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIGDEVKVKILDF 373

Query: 678 DDRGK 682
             + K
Sbjct: 374 KPKTK 378


>gi|329577264|gb|EGG58728.1| S1 RNA binding domain protein [Enterococcus faecalis TX1467]
          Length = 159

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMKV 689
            D GKI LS+++
Sbjct: 64  GDDGKIGLSIRI 75


>gi|269797499|ref|YP_003311399.1| ribonuclease PH [Veillonella parvula DSM 2008]
 gi|269094128|gb|ACZ24119.1| ribonuclease PH [Veillonella parvula DSM 2008]
          Length = 251

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 22/254 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   VSR  A  +   R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+DA           PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T SG +  +Q   + G  + + +   L  A+     ++ +  +
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232

Query: 538 VLSESRLQLGEFTP 551
           VL  +  ++G+  P
Sbjct: 233 VLGSTADKVGKVYP 246


>gi|77361757|ref|YP_341332.1| hypothetical protein PSHAa2854 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876668|emb|CAI87890.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 774

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ D  R
Sbjct: 651 ILEGVVSNVANFGAFVDVGVHQDGLVHISSITNKFISDPREVVKAGDIVKVKVVEVDAAR 710

Query: 681 GKIKLSMKVVD 691
            +I  +M++ D
Sbjct: 711 KRISFTMRLDD 721


>gi|221135015|ref|ZP_03561318.1| RNA binding S1 [Glaciecola sp. HTCC2999]
          Length = 790

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + SI D+     I +G V  V +FGAFV     +DGLVHIS ++   ++   +VVK 
Sbjct: 638 KEGVDSINDLTP-GMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDGFISDPREVVKT 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK+++ D  R +I  +M++ D+
Sbjct: 697 GDVVKVKVMEVDIARKRIAFTMRMGDE 723


>gi|329729305|gb|EGG65713.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 535

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD 
Sbjct: 453 VLSIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDI 511

Query: 670 --VWVKLLDFDDRGKIKLSMKVVD 691
             VW+  +   D+ K K+S+ ++D
Sbjct: 512 VDVWIYSI---DKNKDKVSLTMID 532


>gi|329314749|gb|AEB89162.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|229027908|ref|ZP_04184063.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
 gi|228733422|gb|EEL84249.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
          Length = 161

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|71553993|gb|AAZ33204.1| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 294

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 24/211 (11%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +V + +  R  GR ++ +R I       +   GS L   GDT+ I  V++    +     
Sbjct: 49  SVQVSQMKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPR 104

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFP 420
            L G  +      Y  LP ATGE ++  A   ++ G      RL  R++   L  +    
Sbjct: 105 FLKGQGQGWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGD 164

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVK 468
            TL +  ++ ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ +
Sbjct: 165 VTLYVDCDVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ 224

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            G+  +   D+   ED     D  V  T +G
Sbjct: 225 -GEPVL---DLDYPEDSAAETDLNVVMTSAG 251


>gi|21283716|ref|NP_646804.1| hypothetical protein MW1987 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486857|ref|YP_044078.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297210117|ref|ZP_06926510.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910480|ref|ZP_07127932.1| YhgF like protein [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205158|dbj|BAB95852.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245300|emb|CAG43775.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296885317|gb|EFH24257.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888322|gb|EFK83513.1| YhgF like protein [Staphylococcus aureus subsp. aureus TCH70]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|133870|sp|P14128|RS1_PROSP RecName: Full=30S ribosomal protein S1
 gi|897799|emb|CAA26596.1| unnamed protein product [Providencia sp.]
          Length = 378

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E++ E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 60  NVVVSRRAVIESESSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 117

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 118 MAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 155


>gi|51595757|ref|YP_069948.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
 gi|145599575|ref|YP_001163651.1| 30S ribosomal protein S1 [Yersinia pestis Pestoides F]
 gi|153949259|ref|YP_001401545.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
 gi|170024893|ref|YP_001721398.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
 gi|186894835|ref|YP_001871947.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
 gi|51589039|emb|CAH20657.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
 gi|145211271|gb|ABP40678.1| SSU ribosomal protein S1P [Yersinia pestis Pestoides F]
 gi|152960754|gb|ABS48215.1| ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
 gi|169751427|gb|ACA68945.1| ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
 gi|186697861|gb|ACC88490.1| ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|330832708|ref|YP_004401533.1| putative 30S ribosomal protein S1 [Streptococcus suis ST3]
 gi|329306931|gb|AEB81347.1| putative 30S ribosomal protein S1 [Streptococcus suis ST3]
          Length = 401

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D +  G  V VK+L+    D
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G+V ++  FGAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D
Sbjct: 193 VGEVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAID 251

Query: 679 D-RGKIKLSMK 688
           +  G++ LS+K
Sbjct: 252 EVEGRVSLSLK 262


>gi|323143254|ref|ZP_08077948.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
 gi|322417016|gb|EFY07656.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 164 NVVVSRRAIIESENSTERESVLANLQEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 221

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 222 MAWKRVKHPSEIVNVGDEITVKVLKFDRERQRVSLGLK 259



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S ++  + +    K+GD +   +L  D +R +
Sbjct: 368 GKIKSITDFGIFIGLEGGIDGLVHLSDISWQQSGEEAVREFKKGDEITAVVLQVDPERER 427

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 428 ISLGLKQIEED 438


>gi|292487830|ref|YP_003530705.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
 gi|292899057|ref|YP_003538426.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
 gi|291198905|emb|CBJ46015.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
 gi|291553252|emb|CBA20297.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
 gi|312171951|emb|CBX80208.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC BAA-2158]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEIMVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|253731100|ref|ZP_04865265.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725175|gb|EES93904.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|253688122|ref|YP_003017312.1| ribosomal protein S1 [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754700|gb|ACT12776.1| ribosomal protein S1 [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|146282681|ref|YP_001172834.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
 gi|145570886|gb|ABP79992.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
          Length = 582

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 198 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 252

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 253 PSEIVNVGDEIDVKVLKFDRERNRVSLGLK 282



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 297 PEGTRVM-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 355

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 356 DIDEERRRISLGIKQCKSN 374


>gi|57650735|ref|YP_186869.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160760|ref|YP_494667.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195963|ref|YP_500775.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151222181|ref|YP_001333003.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161510275|ref|YP_001575934.1| RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|258453226|ref|ZP_05701217.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|262049234|ref|ZP_06022109.1| hypothetical protein SAD30_0445 [Staphylococcus aureus D30]
 gi|262052480|ref|ZP_06024678.1| hypothetical protein SA930_0056 [Staphylococcus aureus 930918-3]
 gi|282923052|ref|ZP_06330737.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|284025099|ref|ZP_06379497.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 132]
 gi|294850548|ref|ZP_06791275.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|304379244|ref|ZP_07361983.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284921|gb|AAW37015.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126734|gb|ABD21248.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203521|gb|ABD31331.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374981|dbj|BAF68241.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369084|gb|ABX30055.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859172|gb|EEV82029.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|259159601|gb|EEW44647.1| hypothetical protein SA930_0056 [Staphylococcus aureus 930918-3]
 gi|259162599|gb|EEW47166.1| hypothetical protein SAD30_0445 [Staphylococcus aureus D30]
 gi|269941664|emb|CBI50071.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282593243|gb|EFB98240.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|294822568|gb|EFG39010.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|302751945|gb|ADL66122.1| transcription accessory protein (S1 RNA binding) [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304342103|gb|EFM08003.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197005|gb|EFU27347.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140766|gb|EFW32618.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143741|gb|EFW35518.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329724027|gb|EGG60551.1| Tex-like protein N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|15598358|ref|NP_251852.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
 gi|116051151|ref|YP_790018.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152988074|ref|YP_001347348.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PA7]
 gi|218890646|ref|YP_002439510.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
 gi|296388354|ref|ZP_06877829.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAb1]
 gi|313108474|ref|ZP_07794478.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
 gi|81540491|sp|Q9HZ71|RS1_PSEAE RecName: Full=30S ribosomal protein S1
 gi|9949278|gb|AAG06550.1|AE004740_3 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
 gi|115586372|gb|ABJ12387.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150963232|gb|ABR85257.1| ribosomal protein S1 [Pseudomonas aeruginosa PA7]
 gi|218770869|emb|CAW26634.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
 gi|310880980|gb|EFQ39574.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
          Length = 559

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 231 PSEIVNVGDEIDVKVLKFDRERNRVSLGLK 260



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V++L
Sbjct: 275 PEGTRVM-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCKSN 352



 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S +S   V + +    K+GD +   +L  D +R +
Sbjct: 369 GTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERER 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|120553955|ref|YP_958306.1| 30S ribosomal protein S1 [Marinobacter aquaeolei VT8]
 gi|120323804|gb|ABM18119.1| SSU ribosomal protein S1P [Marinobacter aquaeolei VT8]
          Length = 563

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE    RE ++ ++T+  E+    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSEQREALLETLTEGLEI----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 231 PSEIVNVGDEINVKVLKFDRERNRVSLGLK 260



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGSKVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGIK 347



 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD V   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVETVILSVDPERER 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|322385014|ref|ZP_08058664.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
 gi|321270924|gb|EFX53834.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
          Length = 710

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS++S   +   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLVHISKISKNFIKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           KI LS+
Sbjct: 698 KINLSL 703


>gi|237802530|ref|YP_002887724.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273764|emb|CAX10545.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/Jali20/OT]
          Length = 569

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  GD V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSTGDKVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSIK 548



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    D G
Sbjct: 309 RGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEG 368

Query: 682 KIKLSMKVVDQN 693
           KI L +K    N
Sbjct: 369 KISLGLKQTKHN 380



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 457 ITLGVKQLTPN 467


>gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 393

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++ +FGAF+   GA DGL HIS+LS +RV    +V+  G  V V +++ D +R
Sbjct: 215 ILTGRVNQLTNFGAFIDLGGA-DGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAER 273

Query: 681 GKIKLSMKVVDQN 693
            +I LS++ +  N
Sbjct: 274 ERIGLSLRRLQPN 286



 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 600 LAEIEAAREMI----RSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + EI+A RE I    R +   P         + ++  G V  V  FGAFV    A +GL+
Sbjct: 266 VVEIDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLI 325

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           H S+L  +  A+  D+++ G  +  +++  D  R ++ LS++
Sbjct: 326 HASELDADPQAQPRDLLQPGQIITARIISLDKQRQRMGLSLR 367


>gi|253733103|ref|ZP_04867268.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728936|gb|EES97665.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|238753503|ref|ZP_04614866.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
 gi|238708456|gb|EEQ00811.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|159038909|ref|YP_001538162.1| 30S ribosomal protein S1 [Salinispora arenicola CNS-205]
 gi|157917744|gb|ABV99171.1| RNA binding S1 domain protein [Salinispora arenicola CNS-205]
          Length = 493

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V
Sbjct: 288 RQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEV 347

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            VK++D D +R +I LS+K  ++
Sbjct: 348 MVKVIDIDLERRRISLSLKQANE 370



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNKLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVEVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 265 VLDVDLDRERVSLSLKATQED 285


>gi|65317521|ref|ZP_00390480.1| COG1098: Predicted RNA binding protein (contains ribosomal protein
           S1 domain) [Bacillus anthracis str. A2012]
          Length = 136

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|290473875|ref|YP_003466749.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
 gi|289173182|emb|CBJ79955.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDF 677
           N   +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  
Sbjct: 364 NDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISW-NVAGEEAVREYKKGDEIAAVVLQV 422

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 423 DAERERISLGIK 434


>gi|253755709|ref|YP_003028849.1| 30S ribosomal protein S1 [Streptococcus suis BM407]
 gi|251818173|emb|CAZ55971.1| putative 30S ribosomal protein S1 [Streptococcus suis BM407]
          Length = 401

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D +  G  V VK+L+    D
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G+V ++  FGAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D
Sbjct: 193 VGEVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAID 251

Query: 679 D-RGKIKLSMK 688
           +  G++ LS+K
Sbjct: 252 EVEGRVSLSLK 262


>gi|15982885|gb|AAL09789.1| AT4g29060/F19B15_90 [Arabidopsis thaliana]
 gi|18377634|gb|AAL66967.1| unknown protein [Arabidopsis thaliana]
 gi|20465639|gb|AAM20288.1| unknown protein [Arabidopsis thaliana]
          Length = 455

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASS-SLAEIEAAREMIRS--ITDVPEVNK----- 621
           G  V+  + EQ    V  +D  TV    S + A    +R   R    +++P V       
Sbjct: 76  GTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVP 135

Query: 622 --IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
              + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 679 DRGKIKLSMKVVD 691
           +  +I L+M+  D
Sbjct: 196 ESKRISLTMREND 208


>gi|54309615|ref|YP_130635.1| 30S ribosomal protein S1 [Photobacterium profundum SS9]
 gi|46914053|emb|CAG20833.1| putative ribosomal protein S1 [Photobacterium profundum SS9]
          Length = 556

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEINVKVLKFDRERTRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|15806593|ref|NP_295308.1| ribonuclease PH [Deinococcus radiodurans R1]
 gi|21759421|sp|Q9RU11|RNPH_DEIRA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|6459349|gb|AAF11146.1|AE002002_4 ribonuclease PH [Deinococcus radiodurans R1]
          Length = 246

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           +GRD+ T R +S Q G+     GS+    G T+ +  VTL    D++    + G +    
Sbjct: 10  EGRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTL----DDKPAPHMRGKKEGWL 65

Query: 375 MMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              Y+ LP +T +       +    R EI   RL  RA+   +        TL +  ++ 
Sbjct: 66  TAEYSMLPRSTTDRQARERNLQNGRRHEI--QRLLGRALRSSMDLRPFKNQTLYVDCDVL 123

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            +DG + +A+V     AL D           +  PI   V  I++GL+  GD+  +  D+
Sbjct: 124 VADGGTRVASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLI--GDELRV--DL 179

Query: 480 SGDEDHLGHMDFKVAGTDSGI 500
             +ED +   D  V  TD+G+
Sbjct: 180 DYEEDKVARADLNVIATDTGL 200


>gi|59712366|ref|YP_205142.1| 30S ribosomal protein S1 [Vibrio fischeri ES114]
 gi|197334803|ref|YP_002156581.1| ribosomal protein S1 [Vibrio fischeri MJ11]
 gi|59480467|gb|AAW86254.1| 30S ribosomal subunit protein S1 [Vibrio fischeri ES114]
 gi|197316293|gb|ACH65740.1| ribosomal protein S1 [Vibrio fischeri MJ11]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEINVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S    A   D V+E   GD +   +L  D +R
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEDAVREYKKGDEISAVVLAVDAER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 427 ERISLGVKQMEED 439


>gi|50121515|ref|YP_050682.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
 gi|49612041|emb|CAG75490.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|22126658|ref|NP_670081.1| 30S ribosomal protein S1 [Yersinia pestis KIM 10]
 gi|45441028|ref|NP_992567.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108806680|ref|YP_650596.1| 30S ribosomal protein S1 [Yersinia pestis Antiqua]
 gi|108812746|ref|YP_648513.1| 30S ribosomal protein S1 [Yersinia pestis Nepal516]
 gi|149366649|ref|ZP_01888683.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
 gi|165924533|ref|ZP_02220365.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938978|ref|ZP_02227531.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009737|ref|ZP_02230635.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211469|ref|ZP_02237504.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399783|ref|ZP_02305301.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419527|ref|ZP_02311280.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424191|ref|ZP_02315944.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928540|ref|YP_002346415.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
 gi|229841362|ref|ZP_04461521.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843467|ref|ZP_04463613.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229895840|ref|ZP_04511010.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
 gi|229903154|ref|ZP_04518267.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
 gi|270486949|ref|ZP_06204023.1| ribosomal protein S1 [Yersinia pestis KIM D27]
 gi|294503382|ref|YP_003567444.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
 gi|21959672|gb|AAM86332.1|AE013881_2 30S ribosomal subunit protein S1 [Yersinia pestis KIM 10]
 gi|45435887|gb|AAS61444.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776394|gb|ABG18913.1| SSU ribosomal protein S1P [Yersinia pestis Nepal516]
 gi|108778593|gb|ABG12651.1| SSU ribosomal protein S1P [Yersinia pestis Antiqua]
 gi|115347151|emb|CAL20044.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
 gi|149291023|gb|EDM41098.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
 gi|165913125|gb|EDR31749.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
 gi|165923593|gb|EDR40725.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991133|gb|EDR43434.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207240|gb|EDR51720.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962268|gb|EDR58289.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050491|gb|EDR61899.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057040|gb|EDR66803.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229678924|gb|EEO75027.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
 gi|229689814|gb|EEO81875.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697728|gb|EEO87775.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700763|gb|EEO88792.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
 gi|262361423|gb|ACY58144.1| 30S ribosomal protein S1 [Yersinia pestis D106004]
 gi|262365041|gb|ACY61598.1| 30S ribosomal protein S1 [Yersinia pestis D182038]
 gi|270335453|gb|EFA46230.1| ribosomal protein S1 [Yersinia pestis KIM D27]
 gi|294353841|gb|ADE64182.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
 gi|320015749|gb|ADV99320.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|163814142|ref|ZP_02205534.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759]
 gi|158450591|gb|EDP27586.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759]
          Length = 649

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EAA+E+   I    EV    +G V  V  FGAF+   GA DGL+HIS++S  RV     V
Sbjct: 466 EAAKELFDRI----EVGMTVEGVVKNVTSFGAFIDLGGA-DGLLHISEMSWGRVEDPKSV 520

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +K GD V   + + D   KI LS+K  D N
Sbjct: 521 LKVGDKVKAFIKNIDGE-KIALSLKFDDTN 549



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRGK 682
           G+V ++ DFGAF+      D L+H+SQ+S + V K  DV K GD V  ++++ +  D+ K
Sbjct: 566 GKVARMADFGAFIELEPGVDALLHVSQISYDHVNKPEDVYKVGDVVEAEVVECNAADK-K 624

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 625 ISLSVK 630


>gi|118496994|ref|YP_898044.1| ribonuclease PH [Francisella tularensis subsp. novicida U112]
 gi|194324228|ref|ZP_03058002.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
 gi|166228281|sp|A0Q4X5|RNPH_FRATN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118422900|gb|ABK89290.1| ribonuclease PH [Francisella novicida U112]
 gi|194321675|gb|EDX19159.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
          Length = 235

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     E   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPEFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA               P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|53794021|gb|AAU93601.1| chloroplast polyprotein of elongation factor Ts precursor
           [Arabidopsis thaliana]
          Length = 710

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D +  
Sbjct: 139 FTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 199 RISLTMREND 208


>gi|49082078|gb|AAT50439.1| PA5334 [synthetic construct]
          Length = 240

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++     G    R +   RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+DA           G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQG----VPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  TD+G
Sbjct: 175 DLDYLEDSAAETDLNVVMTDAG 196


>gi|79325369|ref|NP_001031743.1| emb2726 (embryo defective 2726); RNA binding / translation
           elongation factor [Arabidopsis thaliana]
 gi|332660181|gb|AEE85581.1| elongation factor Ts family protein [Arabidopsis thaliana]
          Length = 709

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D +  
Sbjct: 139 FTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 199 RISLTMREND 208


>gi|107102692|ref|ZP_01366610.1| hypothetical protein PaerPA_01003758 [Pseudomonas aeruginosa PACS2]
          Length = 542

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 159 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 213

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 214 PSEIVNVGDEIDVKVLKFDRERNRVSLGLK 243



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V++L
Sbjct: 258 PEGTRVM-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVL 316

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 317 DIDEERRRISLGIKQCKSN 335



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S +S   V + +    K+GD +   +L  D +R +
Sbjct: 352 GTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERER 411

Query: 683 IKLSMK 688
           I L +K
Sbjct: 412 ISLGIK 417


>gi|238757619|ref|ZP_04618803.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
 gi|238704124|gb|EEP96657.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|119946634|ref|YP_944314.1| 30S ribosomal protein S1 [Psychromonas ingrahamii 37]
 gi|119865238|gb|ABM04715.1| SSU ribosomal protein S1P [Psychromonas ingrahamii 37]
          Length = 556

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + ++ E  +I KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIETENSVERDELLENLQEGQEI-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 260



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++  T +    S VV  GD   V +LD D +R +
Sbjct: 282 GKVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDAAEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 342 ISLGLKQCKAN 352



 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S E   + + +  K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGNIDGLVHLSDISWEAEGEKAVLDYKKGDEIEAVVLQVDPERER 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|83647658|ref|YP_436093.1| 30S ribosomal protein S1 [Hahella chejuensis KCTC 2396]
 gi|83635701|gb|ABC31668.1| ribosomal protein S1 [Hahella chejuensis KCTC 2396]
          Length = 559

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVNVGDEITVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD + V +L
Sbjct: 275 PENTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQLGDELEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCHAN 352


>gi|71066420|ref|YP_265147.1| ribonuclease PH [Psychrobacter arcticus 273-4]
 gi|123647900|sp|Q4FQJ5|RNPH_PSYA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71039405|gb|AAZ19713.1| RNAse PH [Psychrobacter arcticus 273-4]
          Length = 238

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+   +R IS +    +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASV----ESGVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++  ++  +     T+ +  
Sbjct: 57  GWITAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKP-----------VAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A+V G+++AL+DA   I K            VA +++G+ KDG+ ++  
Sbjct: 117 DVLQADGGTRTASVTGAAIALIDALESIQKTKKLKADPLIGLVAAVSVGM-KDGEAYL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED     D  V  T  G
Sbjct: 174 -DLNYEEDASCDTDLNVVMTQKG 195


>gi|300722536|ref|YP_003711826.1| 30S ribosomal subunit protein S1 [Xenorhabdus nematophila ATCC
           19061]
 gi|297629043|emb|CBJ89628.1| 30S ribosomal subunit protein S1 [Xenorhabdus nematophila ATCC
           19061]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|251789939|ref|YP_003004660.1| 30S ribosomal protein S1 [Dickeya zeae Ech1591]
 gi|247538560|gb|ACT07181.1| ribosomal protein S1 [Dickeya zeae Ech1591]
          Length = 569

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|239637363|ref|ZP_04678345.1| protein YhgF [Staphylococcus warneri L37603]
 gi|239596963|gb|EEQ79478.1| protein YhgF [Staphylococcus warneri L37603]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V 
Sbjct: 636 SIEDLSEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694

Query: 672 VKLLDFDDRGKIKLSMKVVD 691
           V +L  D + K K+S+ +++
Sbjct: 695 VWILSIDTQ-KDKVSLTIIN 713


>gi|226330706|ref|ZP_03806224.1| hypothetical protein PROPEN_04626 [Proteus penneri ATCC 35198]
 gi|225201501|gb|EEG83855.1| hypothetical protein PROPEN_04626 [Proteus penneri ATCC 35198]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|197284609|ref|YP_002150481.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
 gi|227356792|ref|ZP_03841177.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
 gi|194682096|emb|CAR41670.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
 gi|227163082|gb|EEI48017.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|145595655|ref|YP_001159952.1| 30S ribosomal protein S1 [Salinispora tropica CNB-440]
 gi|145304992|gb|ABP55574.1| SSU ribosomal protein S1P [Salinispora tropica CNB-440]
          Length = 493

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V
Sbjct: 288 RQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEV 347

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            VK++D D +R +I LS+K  ++
Sbjct: 348 MVKVIDIDLERRRISLSLKQANE 370



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNKLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVEVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 265 VLDVDLDRERVSLSLKATQED 285


>gi|559914|emb|CAA86365.1| 30S ribosomal protein S1 [Mycobacterium leprae]
          Length = 482

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352

Query: 679 -DRGKIKLSMK 688
            +R +I LS+K
Sbjct: 353 LERRRISLSLK 363



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  +++FG      G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR
Sbjct: 211 IRKGVVSSIVNFGCVCR-SGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDR 269

Query: 681 GKIKLSMKVVDQN 693
            ++ LS+K   ++
Sbjct: 270 ERVSLSLKATQED 282


>gi|37525567|ref|NP_928911.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784995|emb|CAE13915.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|114320092|ref|YP_741775.1| 30S ribosomal protein S1 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226486|gb|ABI56285.1| SSU ribosomal protein S1P [Alkalilimnicola ehrlichii MLHE-1]
          Length = 561

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           + K+ +GQV+K     + D+GAFV   G  DGL+HI+ ++  RV   S+VV+ G  + VK
Sbjct: 186 LEKLQEGQVLKGIVKNLTDYGAFVDL-GGMDGLLHITDMAWRRVKNPSEVVEVGQEIEVK 244

Query: 674 LLDFD-DRGKIKLSMK 688
           +L FD +R ++ L +K
Sbjct: 245 VLKFDRERNRVSLGLK 260



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + ++GAFV      +GLVH+S++  T +    + +V  GD V V +LD D +R +
Sbjct: 282 GRVTNITEYGAFVEIEEGVEGLVHVSEMDWTNKNVNPAKMVSIGDEVEVMILDIDEERRR 341

Query: 683 IKLSMK 688
           I L MK
Sbjct: 342 ISLGMK 347



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG FV   G  DGLVH+S LS     + +    ++G+ V   +L  D +R +
Sbjct: 369 GQIKSITDFGIFVGLDGGIDGLVHLSDLSWGEAGEEAVRNYRKGEEVEAVVLSVDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++Q+
Sbjct: 429 ISLGIKQLEQD 439



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D P+   + KG V  V   GA V   G  +G V  S +S +RV     V+KEG+ +  
Sbjct: 445 LADHPK-GSLVKGTVKDVEAKGATVTLEGGMEGYVRASDISRDRVEDARTVLKEGEEIEA 503

Query: 673 KLLDFDDRGKI-KLSMKVVDQ 692
           K +  D R ++  LS+K  DQ
Sbjct: 504 KFVGVDRRNRMANLSIKAKDQ 524


>gi|288553942|ref|YP_003425877.1| general stress protein 13 [Bacillus pseudofirmus OF4]
 gi|288545102|gb|ADC48985.1| general stress protein 13 putative RNA binding protein [Bacillus
           pseudofirmus OF4]
          Length = 140

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAFV     + GLVHIS+++   V   +DV+  GD V VK+++ 
Sbjct: 5   EVGSIVEGKVTGIKPFGAFVAIDEQKQGLVHISEVAHGFVKDINDVLSVGDEVKVKIMNV 64

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           ++  GKI LS++   +   +P
Sbjct: 65  EENSGKISLSIRATQEAPERP 85


>gi|256830726|ref|YP_003159454.1| 30S riboosomal protein S1 [Desulfomicrobium baculatum DSM 4028]
 gi|256579902|gb|ACU91038.1| ribosomal protein S1 [Desulfomicrobium baculatum DSM 4028]
          Length = 593

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  ++D+GAFV      +GLVHIS++S T ++   S +V+ GD V V +L
Sbjct: 291 PEGHKL-SGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVRPGDEVDVIIL 349

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D DR +I L MK V  N
Sbjct: 350 GVDVDRKRISLGMKQVAPN 368



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 120/282 (42%), Gaps = 46/282 (16%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E D  S +     S    ++ GV +S  V  I        DD  IL D+          +
Sbjct: 17  EMDFESQLENYLNSDFGDIEEGVIVSGEVVKI--------DDSYILVDV----------N 58

Query: 491 FKVAGT---DSGITAMQMDMKIGGISENIMV--------MALQQAKRGRLHILNEMSKVL 539
           FK  G    D  +   Q+ +K+G   +  +V        + L + K  R+ +L+E+ K+L
Sbjct: 59  FKSEGQIPLDEFMENGQVTVKVGDTVDVYVVRKNEREGSIVLSREKAKRMQVLDELEKLL 118

Query: 540 SESRLQLGEFTPRVE---------IMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNI 587
               + +G    R++         I A  P     +R V  M   V +   E    K+N 
Sbjct: 119 DSGDVVVGRIVRRIKGGYVVEIKGIEAFLPGSHVDLRPVPDMDALVNQDF-EFRVLKIN- 176

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
                V ++   L E +  R+    +T + E   +  G V  + ++G F+   G  DGL+
Sbjct: 177 RRRSNVIVSRRVLLEEDRDRKRGELLTTLEEGQSVV-GVVKNITEYGVFIDLGGL-DGLL 234

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           HI+ +S +R+    ++V+ GD + +K+L FD D  K+ L +K
Sbjct: 235 HITDMSWKRIKHPKEMVQLGDELTLKVLSFDKDEKKVSLGLK 276



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 615 DVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           DVP    V  +  G +  + DFG FV      +GLVH+S++S +++    +   EGD + 
Sbjct: 459 DVPNRYPVGTMLTGTITNITDFGLFVEVEEGIEGLVHVSEMSKKKIKSPKEAFNEGDAIE 518

Query: 672 VKLLDFD-DRGKIKLSMK 688
            K++    D  ++ LS+K
Sbjct: 519 AKVIHVSADERRLGLSLK 536



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +  V  + +FG F+      DGL+H+S LS T+++   +++ K GD V  K+L  D
Sbjct: 382 ILEASVKNITEFGLFIGIEDGIDGLIHVSDLSWTKKIRHPNELYKVGDVVRAKVLTVD 439


>gi|197303695|ref|ZP_03168732.1| hypothetical protein RUMLAC_02424 [Ruminococcus lactaris ATCC
           29176]
 gi|197297215|gb|EDY31778.1| hypothetical protein RUMLAC_02424 [Ruminococcus lactaris ATCC
           29176]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 8/89 (8%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM + I  TDV E+  + +G V+K     V+DFGAFV     +DGLVHISQ++ + +   
Sbjct: 626 EMPKPILRTDVLEMKDLKEGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQITDKFIKHP 685

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            + V  GD V VK++  D  + +I+L+M+
Sbjct: 686 LEAVSVGDIVDVKVMSVDMKKKRIQLTMR 714


>gi|86160091|ref|YP_466876.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776602|gb|ABC83439.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 408

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ G V  V D+GAFV   G  +GLVH+S+L+ +RV+K  D++  GD V V++L  D+  
Sbjct: 199 VFDGVVTSVQDYGAFVDIGGV-EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDP 257

Query: 682 K----IKLSMK 688
           K    I LS+K
Sbjct: 258 KKGERIGLSVK 268



 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +  V KV  FG FV F G R GLV  S+  T R A      K GDT+   +   D
Sbjct: 300 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGADLRRSFKVGDTIQALVSAID 358

Query: 679 DRGKIKLS 686
           ++G+I+LS
Sbjct: 359 EQGRIRLS 366


>gi|123441852|ref|YP_001005835.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238749770|ref|ZP_04611275.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
 gi|238763339|ref|ZP_04624303.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
 gi|238784530|ref|ZP_04628538.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
 gi|238789317|ref|ZP_04633104.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
 gi|238792399|ref|ZP_04636033.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
 gi|238795851|ref|ZP_04639364.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
 gi|332162206|ref|YP_004298783.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122088813|emb|CAL11619.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238698438|gb|EEP91191.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
 gi|238712425|gb|EEQ04638.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
 gi|238714593|gb|EEQ06597.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
 gi|238720314|gb|EEQ12117.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
 gi|238722649|gb|EEQ14302.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
 gi|238728325|gb|EEQ19845.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
 gi|318606262|emb|CBY27760.1| SSU ribosomal protein S1p [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666436|gb|ADZ43080.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862894|emb|CBX73031.1| 30S ribosomal protein S1 [Yersinia enterocolitica W22703]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01]
 gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01]
          Length = 239

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA           G P+ + +A +++G+ + G+  +   
Sbjct: 119 VIQADGGTRTASITGAMVALIDALKVLKKRGALKGEPLKQMIAAVSVGIYQ-GEPVL--- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T++G
Sbjct: 175 DLDYLEDSAAETDLNVVMTNAG 196


>gi|322832232|ref|YP_004212259.1| ribosomal protein S1 [Rahnella sp. Y9602]
 gi|321167433|gb|ADW73132.1| ribosomal protein S1 [Rahnella sp. Y9602]
          Length = 569

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|295702437|ref|YP_003595512.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294800096|gb|ADF37162.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 724

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+     +DGLVHIS+L+   V    DVV  GD   VWV+ +D   +G
Sbjct: 655 EGTVRNVVDFGAFIDIGVKQDGLVHISKLTNRYVKHPLDVVSVGDLVNVWVEDVDM-KKG 713

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 714 RVALTM 719


>gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
 gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
          Length = 475

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +RD+       + + GS L   G+T+ I   ++    +E     + G    
Sbjct: 26  RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASI----EEGVPHFMKGAGSG 81

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT    +  +   +  G      RL  R+I  V+   A    T+ I  +
Sbjct: 82  WITAEYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCD 141

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA            +P+   +A I++G++   DD + L 
Sbjct: 142 VIQADGGTRTASITGAYVALADALYKLYKSGQIKKMPVKNLLAAISIGII---DDEVRL- 197

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           DI  +ED    +D  V   + G
Sbjct: 198 DICYEEDSKAMVDTNVVMNNRG 219


>gi|271500810|ref|YP_003333835.1| 30S ribosomal protein S1 [Dickeya dadantii Ech586]
 gi|270344365|gb|ACZ77130.1| ribosomal protein S1 [Dickeya dadantii Ech586]
          Length = 569

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|227111988|ref|ZP_03825644.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328155|ref|ZP_03832179.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|117617800|ref|YP_856344.1| 30S ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559207|gb|ABK36155.1| ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 556

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E   E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIETENTSERESLLANLQEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLK 260



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGVKQIEED 439


>gi|188025797|ref|ZP_02959855.2| hypothetical protein PROSTU_01754 [Providencia stuartii ATCC 25827]
 gi|188020538|gb|EDU58578.1| hypothetical protein PROSTU_01754 [Providencia stuartii ATCC 25827]
          Length = 569

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|301167058|emb|CBW26637.1| putative transcriptional accessory protein [Bacteriovorax marinus
           SJ]
          Length = 769

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  I D+ +V++ Y G V  +  FGAFV      +GL+H+SQ++ + V    D +K 
Sbjct: 642 RKDISKIGDL-KVDEWYPGIVTNITQFGAFVDIGIKENGLLHVSQIADKFVENALDELKV 700

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  + V++ D D DRG+I LS K  D N
Sbjct: 701 GQELKVRVKDVDLDRGRISLSCKQDDGN 728


>gi|257094467|ref|YP_003168108.1| 30S ribosomal protein S1 [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046991|gb|ACV36179.1| ribosomal protein S1 [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 566

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++
Sbjct: 200 IVKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLAVGDEVQAKILKFDQEK 258

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 259 NRVSLGLK 266



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 281 PPTTRLF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 339

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 340 EIDEDRRRISLGMK 353



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS     + +    K+GD V   +L  D D+ 
Sbjct: 374 RGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSLPGEEAIRNFKKGDEVDAVVLAIDTDKE 433

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 434 RISLGIKQLD 443


>gi|153953445|ref|YP_001394210.1| 30S ribosomal protein S1 [Clostridium kluyveri DSM 555]
 gi|146346326|gb|EDK32862.1| 30S ribosomal protein S1 [Clostridium kluyveri DSM 555]
          Length = 314

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N I  G V KV++ GAF+      +GLVHIS++S E +    +V++ GD V VK+L+ D+
Sbjct: 205 NDIVDGIVSKVINIGAFIEIEPGIEGLVHISEISQEHITTPEEVLRVGDKVKVKILNIDE 264

Query: 680 RG-KIKLSMK 688
           +  +I LS+K
Sbjct: 265 KASRISLSIK 274



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ +FG FV   G  +GLVHIS+LS +++   S+VV  GD + V +L+ + DR +I
Sbjct: 125 GRVSRITNFGVFVDLGGV-EGLVHISELSWKKIKDPSEVVSVGDKLKVYVLNLNQDRNRI 183

Query: 684 KLSMK 688
            LS+K
Sbjct: 184 SLSIK 188


>gi|145298754|ref|YP_001141595.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851526|gb|ABO89847.1| ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 556

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E   E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIETENTSERESLLANLQEGQEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSLGLK 260



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVREFKKGDEIEAVVLQVDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGVKQIEED 439


>gi|30260252|ref|NP_842629.1| hypothetical protein BA_0060 [Bacillus anthracis str. Ames]
 gi|42779140|ref|NP_976387.1| hypothetical protein BCE_0059 [Bacillus cereus ATCC 10987]
 gi|47525314|ref|YP_016663.1| hypothetical protein GBAA_0060 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569910|ref|ZP_00240577.1| S1 RNA-binding domain protein [Bacillus cereus G9241]
 gi|49183095|ref|YP_026347.1| hypothetical protein BAS0060 [Bacillus anthracis str. Sterne]
 gi|49479983|ref|YP_034414.1| hypothetical protein BT9727_0056 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145156|ref|YP_081673.1| hypothetical protein BCZK0056 [Bacillus cereus E33L]
 gi|118475832|ref|YP_892983.1| hypothetical protein BALH_0058 [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872545|ref|ZP_02217177.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167635120|ref|ZP_02393437.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|167641518|ref|ZP_02399766.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|170688881|ref|ZP_02880083.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|170707597|ref|ZP_02898050.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|190568990|ref|ZP_03021891.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036399|ref|ZP_03103796.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196041758|ref|ZP_03109048.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
 gi|196047359|ref|ZP_03114572.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|206977922|ref|ZP_03238809.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217957637|ref|YP_002336179.1| hypothetical protein BCAH187_A0070 [Bacillus cereus AH187]
 gi|218901263|ref|YP_002449097.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|222093831|ref|YP_002527880.1| hypothetical protein BCQ_0068 [Bacillus cereus Q1]
 gi|225862114|ref|YP_002747492.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
 gi|227812735|ref|YP_002812744.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228912801|ref|ZP_04076449.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925315|ref|ZP_04088412.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931564|ref|ZP_04094471.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943868|ref|ZP_04106254.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983317|ref|ZP_04143531.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089193|ref|ZP_04220475.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|229136908|ref|ZP_04265536.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|229153840|ref|ZP_04281971.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|229182456|ref|ZP_04309708.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|229194452|ref|ZP_04321256.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|229600529|ref|YP_002864713.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
 gi|254682312|ref|ZP_05146173.1| hypothetical protein BantC_00473 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724202|ref|ZP_05185987.1| hypothetical protein BantA1_17303 [Bacillus anthracis str. A1055]
 gi|254735463|ref|ZP_05193171.1| hypothetical protein BantWNA_09911 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744635|ref|ZP_05202314.1| hypothetical protein BantKB_27155 [Bacillus anthracis str. Kruger
           B]
 gi|254756340|ref|ZP_05208369.1| hypothetical protein BantV_28077 [Bacillus anthracis str. Vollum]
 gi|254762396|ref|ZP_05214238.1| hypothetical protein BantA9_28291 [Bacillus anthracis str.
           Australia 94]
 gi|300119155|ref|ZP_07056856.1| hypothetical protein BCSJ1_22210 [Bacillus cereus SJ1]
 gi|301051798|ref|YP_003790009.1| S1 RNA binding domain-containing protein [Bacillus anthracis CI]
 gi|30253573|gb|AAP24115.1| S1 RNA binding domain protein [Bacillus anthracis str. Ames]
 gi|42735055|gb|AAS38995.1| S1 RNA binding domain protein [Bacillus cereus ATCC 10987]
 gi|47500462|gb|AAT29138.1| S1 RNA binding domain protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553444|gb|EAL11828.1| S1 RNA-binding domain protein [Bacillus cereus G9241]
 gi|49177022|gb|AAT52398.1| S1 RNA binding domain protein [Bacillus anthracis str. Sterne]
 gi|49331539|gb|AAT62185.1| S1-type RNA-binding domain protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51978625|gb|AAU20175.1| S1-type RNA-binding domain protein [Bacillus cereus E33L]
 gi|118415057|gb|ABK83476.1| S1-type RNA-binding domain protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711673|gb|EDR17218.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167510503|gb|EDR85901.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|167529594|gb|EDR92344.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|170127593|gb|EDS96467.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|170667105|gb|EDT17866.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|190559914|gb|EDV13898.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991029|gb|EDX55000.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196021761|gb|EDX60455.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|196027378|gb|EDX65995.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
 gi|206743828|gb|EDZ55248.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217063105|gb|ACJ77355.1| S1 RNA binding domain protein [Bacillus cereus AH187]
 gi|218535689|gb|ACK88087.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|221237878|gb|ACM10588.1| S1-type RNA-binding domain protein [Bacillus cereus Q1]
 gi|225786141|gb|ACO26358.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
 gi|227003771|gb|ACP13514.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228589042|gb|EEK47056.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|228601036|gb|EEK58604.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|228629644|gb|EEK86340.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|228646573|gb|EEL02779.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|228694156|gb|EEL47837.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|228776431|gb|EEM24783.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815825|gb|EEM62060.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828116|gb|EEM73843.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834362|gb|EEM79902.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846861|gb|EEM91865.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229264937|gb|ACQ46574.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
 gi|298723477|gb|EFI64218.1| hypothetical protein BCSJ1_22210 [Bacillus cereus SJ1]
 gi|300373967|gb|ADK02871.1| S1 RNA binding domain protein [Bacillus cereus biovar anthracis
           str. CI]
 gi|324324051|gb|ADY19311.1| hypothetical protein YBT020_00290 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 160

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|253990303|ref|YP_003041659.1| 30S ribosomal protein S1 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781753|emb|CAQ84916.1| 30s ribosomal protein s1 [Photorhabdus asymbiotica]
          Length = 569

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|209695657|ref|YP_002263586.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
 gi|208009609|emb|CAQ79905.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEINVKVLKFDRERTRVSLGLK 260



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKAN 352



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S    A   D V+E   GD +   +L  D +R
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEDAVREYKKGDEISAVVLAVDAER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 427 ERISLGVKQMEED 439


>gi|126653373|ref|ZP_01725477.1| ribosomal protein S1, putative [Bacillus sp. B14905]
 gi|126589889|gb|EAZ84020.1| ribosomal protein S1, putative [Bacillus sp. B14905]
          Length = 378

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G+V ++  FGAF+   G  DGLVHISQ+S E V+  S+V+ EG  V VK+L  D   
Sbjct: 189 VLDGKVQRLASFGAFIDLGGI-DGLVHISQVSHEHVSDVSEVLSEGQGVTVKVLSVDPAN 247

Query: 682 -KIKLSMK 688
            +I LS+K
Sbjct: 248 ERISLSIK 255



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++  FGAFV      +GLVHISQ++ + +    + +KEG  V VK+LD + + 
Sbjct: 274 ILDGKVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQVKVLDVNAED 333

Query: 681 GKIKLSMKVVDQN 693
           G++ LS+K + +N
Sbjct: 334 GRLALSIKELLEN 346


>gi|160898815|ref|YP_001564397.1| RNA-binding S1 domain-containing protein [Delftia acidovorans
           SPH-1]
 gi|160364399|gb|ABX36012.1| RNA binding S1 domain protein [Delftia acidovorans SPH-1]
          Length = 786

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ E     +G V  V  FGAFV     +DGLVH+SQ+S + +    +VVK G  
Sbjct: 655 VEDIKDLKE-GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQI 713

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V VK+L+ D  R +I L+MK+
Sbjct: 714 VKVKVLEVDVARKRISLTMKL 734


>gi|85058971|ref|YP_454673.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
 gi|84779491|dbj|BAE74268.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
          Length = 558

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|332283688|ref|YP_004415599.1| transcription accessory protein [Pusillimonas sp. T7-7]
 gi|330427641|gb|AEC18975.1| transcription accessory protein [Pusillimonas sp. T7-7]
          Length = 804

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + +I D+     I +G V  V +FGAFV     +DGLVHIS LS   V    DVV+ 
Sbjct: 672 KEGVNTINDL-HAGMILEGVVTNVANFGAFVDVGVHQDGLVHISALSDTFVKDPRDVVRV 730

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V VK+ + D  R +I L+M++ D
Sbjct: 731 GQMVKVKVQEVDAARKRIGLTMRLND 756


>gi|317491458|ref|ZP_07949894.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921005|gb|EFV42328.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 559

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|289550745|ref|YP_003471649.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315658241|ref|ZP_07911113.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|289180277|gb|ADC87522.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315496570|gb|EFU84893.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
          Length = 392

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 603 IEAAREMIR--SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E A   ++  S+ D      + KG+V ++ +FGAF+   G  DGLVH+S+LS E V   
Sbjct: 175 VEQAENEVKKASLLDSLNAGDVIKGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVDSP 233

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            DVV  G  V VK+   + D  +I LS+K
Sbjct: 234 EDVVSVGQEVEVKVKSVEKDSERISLSIK 262



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G VV++  FGAFV       GLVHIS++  + +   S+ ++ G  V VK+L  D D 
Sbjct: 281 VIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDEDN 340

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 341 ERISLSIK 348



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +KI  G+V +V D    VH  G + +G++ ISQLST  +   ++VV  GD++ 
Sbjct: 10  INDIKEGDKI-TGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSVGDSIE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++ D+  +
Sbjct: 69  AYVTKIEVDEENE 81


>gi|242239665|ref|YP_002987846.1| 30S ribosomal protein S1 [Dickeya dadantii Ech703]
 gi|242131722|gb|ACS86024.1| ribosomal protein S1 [Dickeya dadantii Ech703]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|229015464|ref|ZP_04172465.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
 gi|229021671|ref|ZP_04178256.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|228739635|gb|EEL90046.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|228745848|gb|EEL95849.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
          Length = 162

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|94266546|ref|ZP_01290232.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
 gi|93452821|gb|EAT03347.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
          Length = 570

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E AR+ +R+ +    E  ++  G V  + D+G FV   G  DGL HI+ LS  R
Sbjct: 178 SRRAIMEEARQQLRNEMRGTLEEGQVLTGTVTNITDYGVFVDL-GGMDGLCHITDLSWGR 236

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+  S + K GD + VK+L +D +  K+ L +K
Sbjct: 237 VSHPSKMFKVGDEIQVKVLKYDQENDKVSLGVK 269



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVVKEGDTVWVKLLDFDDRGK- 682
           G+VV + D+GAFV      +GLVHIS++S  + ++  S +V  GD V V +L+ D   K 
Sbjct: 291 GKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKR 350

Query: 683 IKLSMKVVDQN 693
           I L MK +  N
Sbjct: 351 ISLGMKQLQPN 361



 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           +G++  V DFG FV      +GL+H+S+LS E+V     +   GDT+  ++++    DR 
Sbjct: 464 EGKITNVTDFGVFVELEEGIEGLIHVSELSKEKVETPVGLYNVGDTIEARVINVSAKDR- 522

Query: 682 KIKLSMKVV 690
           KI LS+K +
Sbjct: 523 KIGLSIKAL 531



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +G++  + DFG F+      DGL+H+S LS TER+    +   +G+T+   +L  D
Sbjct: 375 IIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKGETIQAVVLKID 432


>gi|30018332|ref|NP_829963.1| hypothetical protein BC0066 [Bacillus cereus ATCC 14579]
 gi|206972584|ref|ZP_03233527.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|218231669|ref|YP_002364911.1| hypothetical protein BCB4264_A0066 [Bacillus cereus B4264]
 gi|218895197|ref|YP_002443608.1| S1 RNA binding domain protein [Bacillus cereus G9842]
 gi|228905858|ref|ZP_04069756.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|228919012|ref|ZP_04082392.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228937364|ref|ZP_04100011.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228950610|ref|ZP_04112745.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956503|ref|ZP_04118300.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963162|ref|ZP_04124332.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228970250|ref|ZP_04130910.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976820|ref|ZP_04137233.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|229039967|ref|ZP_04189731.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|229067826|ref|ZP_04201144.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|229074123|ref|ZP_04207170.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|229077345|ref|ZP_04210020.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|229094783|ref|ZP_04225789.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|229100856|ref|ZP_04231664.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|229107748|ref|ZP_04237385.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|229113736|ref|ZP_04243172.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
 gi|229125579|ref|ZP_04254612.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|229142867|ref|ZP_04271310.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|229148471|ref|ZP_04276728.1| RNA binding S1 domain protein [Bacillus cereus m1550]
 gi|229159235|ref|ZP_04287260.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|229176662|ref|ZP_04304067.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|296500894|ref|YP_003662594.1| hypothetical protein BMB171_C0056 [Bacillus thuringiensis BMB171]
 gi|29893872|gb|AAP07164.1| S1-type RNA-binding domain [Bacillus cereus ATCC 14579]
 gi|206732486|gb|EDZ49665.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|218159626|gb|ACK59618.1| S1 RNA binding domain protein [Bacillus cereus B4264]
 gi|218543176|gb|ACK95570.1| S1 RNA binding domain protein [Bacillus cereus G9842]
 gi|228606829|gb|EEK64245.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|228624250|gb|EEK81051.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|228635013|gb|EEK91585.1| RNA binding S1 domain protein [Bacillus cereus m1550]
 gi|228640630|gb|EEK97017.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|228657896|gb|EEL13701.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|228669733|gb|EEL25139.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
 gi|228675721|gb|EEL30928.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|228682556|gb|EEL36625.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|228688651|gb|EEL42523.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|228705969|gb|EEL58282.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|228709017|gb|EEL61143.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|228715310|gb|EEL67168.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|228727375|gb|EEL78568.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|228782916|gb|EEM31081.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|228789485|gb|EEM37404.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228796547|gb|EEM43985.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228803193|gb|EEM50014.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228809085|gb|EEM55569.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228822322|gb|EEM68303.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228840661|gb|EEM85922.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228853798|gb|EEM98557.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|296321946|gb|ADH04874.1| hypothetical protein BMB171_C0056 [Bacillus thuringiensis BMB171]
 gi|326937853|gb|AEA13749.1| hypothetical protein CT43_CH0056 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 161

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|300716082|ref|YP_003740885.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
 gi|299061918|emb|CAX59034.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|331656982|ref|ZP_08357944.1| ribosomal protein S1 [Escherichia coli TA206]
 gi|331055230|gb|EGI27239.1| ribosomal protein S1 [Escherichia coli TA206]
          Length = 366

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|269139520|ref|YP_003296221.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
 gi|267985181|gb|ACY85010.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
 gi|304559409|gb|ADM42073.1| SSU ribosomal protein S1p [Edwardsiella tarda FL6-60]
          Length = 557

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|238020106|ref|ZP_04600532.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
 gi|237863630|gb|EEP64920.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
          Length = 251

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 22/254 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   VSR  A  +   R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+DA           PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T SG +  +Q   + G  + + +   L  A+     ++ +  +
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232

Query: 538 VLSESRLQLGEFTP 551
           VL  +  ++G+  P
Sbjct: 233 VLGTTADKVGKVYP 246


>gi|157695034|gb|ABV66106.1| 30S ribosomal protein S1 [Rickettsiella melolonthae]
          Length = 298

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E +A RE +  +T++ E  ++ KG V  + D+GAF+   G  DGL+H++ +S +RV + 
Sbjct: 53  SEGQAGREQL--LTELEE-GQVIKGIVKNLADYGAFIDLGGI-DGLLHVTDISWKRVKQP 108

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           S+V+  GD + V +L  + DRG++ L +K   Q  G P
Sbjct: 109 SEVLTIGDEIEVVVLKIERDRGRVSLGLK---QLVGDP 143



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+V  V D+G FV      +GLVH+S++  T +    + +V+ G  + V +LD D DR 
Sbjct: 158 KGKVTNVTDYGCFVEIEEGVEGLVHVSEMDWTNKNINPNKIVQAGMEIEVVVLDIDSDRR 217

Query: 682 KIKLSMKVVDQN 693
           +I L +K    N
Sbjct: 218 RISLGIKQCKSN 229


>gi|295694771|ref|YP_003588009.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
 gi|295410373|gb|ADG04865.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
          Length = 141

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    +G+V  +  FGAFV   G   GLVHIS+++   V    D +K  DTV VK++  
Sbjct: 4   ELGSKLEGKVTGITHFGAFVLLPGGVTGLVHISEIADTYVRDIRDYLKINDTVTVKVIHV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D  GKI LS++   + +
Sbjct: 64  DPNGKIGLSIRQAKEGS 80


>gi|294636910|ref|ZP_06715237.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
 gi|291089863|gb|EFE22424.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
          Length = 556

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|282917411|ref|ZP_06325164.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282318613|gb|EFB48970.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
          Length = 716

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSIGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|270261192|ref|ZP_06189465.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
 gi|270044676|gb|EFA17767.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|241894819|ref|ZP_04782115.1| S1 domain RNA-binding protein [Weissella paramesenteroides ATCC
           33313]
 gi|241871940|gb|EER75691.1| S1 domain RNA-binding protein [Weissella paramesenteroides ATCC
           33313]
          Length = 727

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS+LS + +     +V  GD  TVWV  +D   R 
Sbjct: 659 QGTVRNVVDFGAFVDIGVHEDGLVHISKLSKQHIKNPHAIVAVGDIVTVWVTEID-KKRQ 717

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 718 RIGLSM 723


>gi|169350927|ref|ZP_02867865.1| hypothetical protein CLOSPI_01704 [Clostridium spiroforme DSM 1552]
 gi|169291989|gb|EDS74122.1| hypothetical protein CLOSPI_01704 [Clostridium spiroforme DSM 1552]
          Length = 714

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V+DFGAF+      DGLVHIS++S ER+    D +  GD V V ++D D ++
Sbjct: 645 VLEGTVRNVVDFGAFIDIGLKNDGLVHISKISHERIKHPLDKLSIGDIVEVYVIDVDVNK 704

Query: 681 GKIKLSM 687
            ++ LSM
Sbjct: 705 HRVGLSM 711


>gi|308186257|ref|YP_003930388.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
 gi|308056767|gb|ADO08939.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|307130806|ref|YP_003882822.1| 30S ribosomal subunit protein S1 [Dickeya dadantii 3937]
 gi|313104175|sp|P37985|RS1_DICD3 RecName: Full=30S ribosomal protein S1
 gi|306528335|gb|ADM98265.1| 30S ribosomal subunit protein S1 [Dickeya dadantii 3937]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|219854068|ref|YP_002471190.1| hypothetical protein CKR_0725 [Clostridium kluyveri NBRC 12016]
 gi|219567792|dbj|BAH05776.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 317

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N I  G V KV++ GAF+      +GLVHIS++S E +    +V++ GD V VK+L+ D+
Sbjct: 208 NDIVDGIVSKVINIGAFIEIEPGIEGLVHISEISQEHITTPEEVLRVGDKVKVKILNIDE 267

Query: 680 RG-KIKLSMK 688
           +  +I LS+K
Sbjct: 268 KASRISLSIK 277



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ +FG FV   G  +GLVHIS+LS +++   S+VV  GD + V +L+ + DR +I
Sbjct: 128 GRVSRITNFGVFVDLGGV-EGLVHISELSWKKIKDPSEVVSVGDKLKVYVLNLNQDRNRI 186

Query: 684 KLSMK 688
            LS+K
Sbjct: 187 SLSIK 191


>gi|90581253|ref|ZP_01237051.1| 30S ribosomal protein S1 [Vibrio angustum S14]
 gi|90437624|gb|EAS62817.1| 30S ribosomal protein S1 [Vibrio angustum S14]
          Length = 556

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ +  EV    KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLASLQEGMEV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEINVKVLKFDRERTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352


>gi|126698570|ref|YP_001087467.1| putative 30S ribosomal protein S1 [Clostridium difficile 630]
 gi|255091922|ref|ZP_05321400.1| putative 30S ribosomal protein S1 [Clostridium difficile CIP
           107932]
 gi|255100021|ref|ZP_05328998.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-63q42]
 gi|255305908|ref|ZP_05350080.1| putative 30S ribosomal protein S1 [Clostridium difficile ATCC
           43255]
 gi|255516341|ref|ZP_05384017.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-97b34]
 gi|255649441|ref|ZP_05396343.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-37x79]
 gi|260682607|ref|YP_003213892.1| putative 30S ribosomal protein S1 [Clostridium difficile CD196]
 gi|260686207|ref|YP_003217340.1| putative 30S ribosomal protein S1 [Clostridium difficile R20291]
 gi|306519520|ref|ZP_07405867.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-32g58]
 gi|115250007|emb|CAJ67827.1| 30S ribosomal protein S1 [Clostridium difficile]
 gi|260208770|emb|CBA61640.1| putative 30S ribosomal protein S1 [Clostridium difficile CD196]
 gi|260212223|emb|CBE02927.1| putative 30S ribosomal protein S1 [Clostridium difficile R20291]
          Length = 424

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A I+AA+E    + +  EV +   G+V K+M +GAFV   G  +GL HI+ L+  RV   
Sbjct: 218 ARIKAAKE---DLFNSLEVGQKRDGKVTKIMPYGAFVDIGGI-EGLAHINNLAWTRVESV 273

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            DVV EG  V V +LD + +  KI L++K ++ +
Sbjct: 274 EDVVSEGQEVEVYVLDVNKETKKIALALKDINND 307



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +++ +   +V+++++ GAFV      D  + IS+LS  RVAK ++VV  GD V VK+LDF
Sbjct: 317 QIDDVVNAKVLRIIEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIGDEVKVKILDF 376

Query: 678 DDRGK 682
             + K
Sbjct: 377 KPKTK 381


>gi|162420786|ref|YP_001606429.1| 30S ribosomal protein S1 [Yersinia pestis Angola]
 gi|162353601|gb|ABX87549.1| ribosomal protein S1 [Yersinia pestis Angola]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDF 677
           N   +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  
Sbjct: 364 NDCVEGKIKSITDFGIFIGLDGGIDGLVHLSDISW-NVAGEEAVREYKKGDEIAAVVLQV 422

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 423 DAERERISLGVK 434


>gi|238920345|ref|YP_002933860.1| 30S ribosomal protein S1 [Edwardsiella ictaluri 93-146]
 gi|238869914|gb|ACR69625.1| ribosomal protein S1, putative [Edwardsiella ictaluri 93-146]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|228989269|ref|ZP_04149262.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228995452|ref|ZP_04155122.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|229003069|ref|ZP_04160924.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228758187|gb|EEM07377.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228764313|gb|EEM13190.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|228770479|gb|EEM19050.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 166

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|119952930|ref|YP_945139.1| 30S ribosomal protein S1 [Borrelia turicatae 91E135]
 gi|119861701|gb|AAX17469.1| SSU ribosomal protein S1P [Borrelia turicatae 91E135]
          Length = 555

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +V  I KG+VVK++ FGA V       G +HIS  S  RV K+  ++VK G  V VK+L+
Sbjct: 272 KVESIVKGKVVKILPFGAVVELDSEISGFIHISNFSWVRVIKSPQELVKVGQIVEVKILE 331

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K V++N
Sbjct: 332 IDKENQKISLGIKQVNEN 349


>gi|157369952|ref|YP_001477941.1| 30S ribosomal protein S1 [Serratia proteamaculans 568]
 gi|157321716|gb|ABV40813.1| ribosomal protein S1 [Serratia proteamaculans 568]
          Length = 559

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|329770414|ref|ZP_08261796.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325]
 gi|328836537|gb|EGF86197.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325]
          Length = 402

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E AR  I++         + +G V     FGAFV      +GLVHISQ+S +RV   +DV
Sbjct: 284 EVARATIKA-------GDVLEGVVRNTTAFGAFVEVMDDVEGLVHISQISHDRVNNVTDV 336

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  GD V VK+LD D +  ++ LS+K
Sbjct: 337 LNIGDKVSVKVLDVDFENERLSLSIK 362



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           + E E A+++     ++ E   + +G+V ++ +FGAFV+  G  DGL+HIS++S  R+ K
Sbjct: 189 ILEEEKAKKLAEVYGNINE-GDVIEGKVSRITNFGAFVN-IGEVDGLLHISEISHSRLEK 246

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
             D +  GDTV V ++  D +  KI LS K +
Sbjct: 247 VEDALSVGDTVKVAVIAVDKENEKISLSAKTL 278


>gi|304397071|ref|ZP_07378950.1| ribosomal protein S1 [Pantoea sp. aB]
 gi|304355220|gb|EFM19588.1| ribosomal protein S1 [Pantoea sp. aB]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|228898815|ref|ZP_04063098.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
 gi|228860840|gb|EEN05217.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
          Length = 161

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|71892158|ref|YP_277890.1| 30S ribosomal protein S1 [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796264|gb|AAZ41015.1| 30S ribosomal subunit protein S1 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 564

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + D+GAF+   G  DGL+HI+ ++ +RV   SD+V  GD + VK+L FD +R +
Sbjct: 196 RGVVKNLTDYGAFIDLGGV-DGLLHITDMAWKRVKHPSDIVNVGDEIIVKVLRFDRERIR 254

Query: 683 IKLSMKVVDQNTGKPIV 699
           + L +K + ++    IV
Sbjct: 255 VSLGLKQLGEDPWAAIV 271



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           GQV  + D+G F+      +GLVH+S++  T +    S VV  G++V V +LD D +R +
Sbjct: 282 GQVTNLTDYGCFIEIEDGVEGLVHVSEMDWTNKNIHPSKVVAVGESVEVMVLDIDKERRR 341

Query: 683 IKLSMK 688
           I L +K
Sbjct: 342 ISLGLK 347


>gi|152973909|ref|YP_001373426.1| hypothetical protein Bcer98_0056 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022661|gb|ABS20431.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 152

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDEVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|259908919|ref|YP_002649275.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
 gi|224964541|emb|CAX56051.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
 gi|283478915|emb|CAY74831.1| 30S ribosomal protein S1 [Erwinia pyrifoliae DSM 12163]
 gi|310767179|gb|ADP12129.1| 30S ribosomal protein S1 [Erwinia sp. Ejp617]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|203287593|ref|YP_002222608.1| 30S ribosomal protein S1 [Borrelia recurrentis A1]
 gi|201084813|gb|ACH94387.1| 30S ribosomal protein S1 [Borrelia recurrentis A1]
          Length = 555

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 9/125 (7%)

Query: 578 VEQTGAKVNIDDDGTVKI--ASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKV 630
           VE     +++DD   +KI   S++  ++E + + ++     S+    +V  I KG++VK+
Sbjct: 225 VENVEDFIHVDDKLRLKIIKLSTNTGKMELSLKALKVNPWDSVESKYKVESIVKGKIVKI 284

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + FGA V    A  G +HIS  S  R  K+  ++VK G  V VK+L+ D +  KI L +K
Sbjct: 285 LPFGAVVEIDSAISGFLHISNFSWVRSIKSPQELVKVGQIVEVKILEIDKENQKISLGIK 344

Query: 689 VVDQN 693
            V++N
Sbjct: 345 QVNEN 349


>gi|224099083|ref|XP_002311368.1| predicted protein [Populus trichocarpa]
 gi|118485696|gb|ABK94698.1| unknown [Populus trichocarpa]
 gi|222851188|gb|EEE88735.1| predicted protein [Populus trichocarpa]
          Length = 421

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 261 IGSVVTGTVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 319

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 320 RERGRVSLSTKKLEPTPG 337


>gi|85704359|ref|ZP_01035462.1| S1 RNA binding domain protein [Roseovarius sp. 217]
 gi|85671679|gb|EAQ26537.1| S1 RNA binding domain protein [Roseovarius sp. 217]
          Length = 781

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MMEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDVAR 711

Query: 681 GKIKLSMK 688
            +I LSM+
Sbjct: 712 KRIGLSMR 719


>gi|293396771|ref|ZP_06641047.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
 gi|291421035|gb|EFE94288.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|260597309|ref|YP_003209880.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
 gi|260216486|emb|CBA29643.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|237730874|ref|ZP_04561355.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
 gi|283833798|ref|ZP_06353539.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
 gi|226906413|gb|EEH92331.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
 gi|291070463|gb|EFE08572.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|222612339|gb|EEE50471.1| hypothetical protein OsJ_30517 [Oryza sativa Japonica Group]
          Length = 341

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261


>gi|152969495|ref|YP_001334604.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206580559|ref|YP_002239440.1| ribosomal protein S1 [Klebsiella pneumoniae 342]
 gi|238893967|ref|YP_002918701.1| 30S ribosomal protein S1 [Klebsiella pneumoniae NTUH-K2044]
 gi|262040990|ref|ZP_06014212.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936291|ref|YP_003440350.1| ribosomal protein S1 [Klebsiella variicola At-22]
 gi|290510654|ref|ZP_06550024.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
 gi|330014030|ref|ZP_08307846.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
 gi|150954344|gb|ABR76374.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206569617|gb|ACI11393.1| ribosomal protein S1 [Klebsiella pneumoniae 342]
 gi|238546283|dbj|BAH62634.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041684|gb|EEW42733.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288891000|gb|ADC59318.1| ribosomal protein S1 [Klebsiella variicola At-22]
 gi|289777370|gb|EFD85368.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
 gi|328533287|gb|EGF60039.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|150395910|ref|YP_001326377.1| RNA-binding S1 domain-containing protein [Sinorhizobium medicae
           WSM419]
 gi|150027425|gb|ABR59542.1| RNA binding S1 domain protein [Sinorhizobium medicae WSM419]
          Length = 768

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  I D+ +V    +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 639 EGIDDIKDL-KVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V V++ + D  R +I LSM+
Sbjct: 698 DVVHVRVTEVDVARKRIGLSMR 719


>gi|308049649|ref|YP_003913215.1| 30S ribosomal protein S1P [Ferrimonas balearica DSM 9799]
 gi|307631839|gb|ADN76141.1| SSU ribosomal protein S1P [Ferrimonas balearica DSM 9799]
          Length = 556

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD+V V +L
Sbjct: 275 PEGAKLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDSVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKAN 352



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DR 680
           G++  + DFG F+   G  DGLVH+S +S    A   D V+E   G+ +   +L  D +R
Sbjct: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEDAVREYKKGEEISAVVLSVDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++++
Sbjct: 427 ERISLGVKQIEED 439


>gi|219854800|ref|YP_002471922.1| hypothetical protein CKR_1457 [Clostridium kluyveri NBRC 12016]
 gi|219568524|dbj|BAH06508.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 640

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +G+V ++ DFGAFV   G  DGL+H+S+LS  RV K  DV+K GD + V +LD +
Sbjct: 483 VVEGEVRRLTDFGAFVDVQGV-DGLLHVSELSWGRVNKPGDVLKIGDKIQVYILDVN 538



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+VV+  +FGAFV      D LVHISQ+S +R+ K SD ++    +  K+L+ +    KI
Sbjct: 571 GKVVRFANFGAFVELEPGVDALVHISQISHKRIDKPSDALEIEQEIKAKILEVNKESEKI 630

Query: 684 KLSMKVVDQ 692
            LS+K VD+
Sbjct: 631 ALSIKEVDE 639


>gi|188534269|ref|YP_001908066.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
 gi|188029311|emb|CAO97188.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|18417320|ref|NP_567820.1| emb2726 (embryo defective 2726); RNA binding / translation
           elongation factor [Arabidopsis thaliana]
 gi|4972052|emb|CAB43920.1| putative protein [Arabidopsis thaliana]
 gi|7269804|emb|CAB79664.1| putative protein [Arabidopsis thaliana]
 gi|15983773|gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana]
 gi|332660180|gb|AEE85580.1| elongation factor Ts family protein [Arabidopsis thaliana]
          Length = 953

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D +  
Sbjct: 139 FTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 199 RISLTMREND 208


>gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 EDL933]
 gi|15830248|ref|NP_309021.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. Sakai]
 gi|16128878|ref|NP_415431.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. MG1655]
 gi|24112320|ref|NP_706830.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 301]
 gi|26246936|ref|NP_752976.1| 30S ribosomal protein S1 [Escherichia coli CFT073]
 gi|30062446|ref|NP_836617.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
 gi|74311468|ref|YP_309887.1| 30S ribosomal protein S1 [Shigella sonnei Ss046]
 gi|82544650|ref|YP_408597.1| 30S ribosomal protein S1 [Shigella boydii Sb227]
 gi|89107761|ref|AP_001541.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. W3110]
 gi|91210012|ref|YP_539998.1| 30S ribosomal protein S1 [Escherichia coli UTI89]
 gi|110641108|ref|YP_668838.1| 30S ribosomal protein S1 [Escherichia coli 536]
 gi|110804919|ref|YP_688439.1| 30S ribosomal protein S1 [Shigella flexneri 5 str. 8401]
 gi|117623129|ref|YP_852042.1| 30S ribosomal protein S1 [Escherichia coli APEC O1]
 gi|157156817|ref|YP_001462129.1| 30S ribosomal protein S1 [Escherichia coli E24377A]
 gi|157160433|ref|YP_001457751.1| 30S ribosomal protein S1 [Escherichia coli HS]
 gi|168751174|ref|ZP_02776196.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
 gi|168757003|ref|ZP_02782010.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
 gi|168762954|ref|ZP_02787961.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
 gi|168787340|ref|ZP_02812347.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
 gi|168801406|ref|ZP_02826413.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
 gi|170020687|ref|YP_001725641.1| 30S ribosomal protein S1 [Escherichia coli ATCC 8739]
 gi|170080569|ref|YP_001729889.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682691|ref|YP_001744259.1| 30S ribosomal protein S1 [Escherichia coli SMS-3-5]
 gi|170769166|ref|ZP_02903619.1| ribosomal protein S1 [Escherichia albertii TW07627]
 gi|187733119|ref|YP_001880894.1| 30S ribosomal protein S1 [Shigella boydii CDC 3083-94]
 gi|188493632|ref|ZP_03000902.1| ribosomal protein S1 [Escherichia coli 53638]
 gi|191172054|ref|ZP_03033598.1| ribosomal protein S1 [Escherichia coli F11]
 gi|193064659|ref|ZP_03045738.1| ribosomal protein S1 [Escherichia coli E22]
 gi|193070761|ref|ZP_03051696.1| ribosomal protein S1 [Escherichia coli E110019]
 gi|194428403|ref|ZP_03060944.1| ribosomal protein S1 [Escherichia coli B171]
 gi|194438750|ref|ZP_03070837.1| ribosomal protein S1 [Escherichia coli 101-1]
 gi|208815475|ref|ZP_03256654.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
 gi|208822805|ref|ZP_03263124.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
 gi|209397472|ref|YP_002269583.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
 gi|209918161|ref|YP_002292245.1| 30S ribosomal protein S1 [Escherichia coli SE11]
 gi|215486036|ref|YP_002328467.1| 30S ribosomal protein S1 [Escherichia coli O127:H6 str. E2348/69]
 gi|217326370|ref|ZP_03442454.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
 gi|218553498|ref|YP_002386411.1| 30S ribosomal protein S1 [Escherichia coli IAI1]
 gi|218557816|ref|YP_002390729.1| 30S ribosomal protein S1 [Escherichia coli S88]
 gi|218688751|ref|YP_002396963.1| 30S ribosomal protein S1 [Escherichia coli ED1a]
 gi|218694384|ref|YP_002402051.1| 30S ribosomal protein S1 [Escherichia coli 55989]
 gi|218700570|ref|YP_002408199.1| 30S ribosomal protein S1 [Escherichia coli IAI39]
 gi|218704338|ref|YP_002411857.1| 30S ribosomal protein S1 [Escherichia coli UMN026]
 gi|227884124|ref|ZP_04001929.1| 30S ribosomal protein S1 [Escherichia coli 83972]
 gi|237707101|ref|ZP_04537582.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
 gi|238900169|ref|YP_002925965.1| 30S ribosomal subunit protein S1 [Escherichia coli BW2952]
 gi|253774060|ref|YP_003036891.1| 30S ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161025|ref|YP_003044133.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
 gi|254792110|ref|YP_003076947.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. TW14359]
 gi|256020961|ref|ZP_05434826.1| 30S ribosomal protein S1 [Shigella sp. D9]
 gi|256023388|ref|ZP_05437253.1| 30S ribosomal protein S1 [Escherichia sp. 4_1_40B]
 gi|260843161|ref|YP_003220939.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
           12009]
 gi|260854202|ref|YP_003228093.1| 30S ribosomal subunit protein S1 [Escherichia coli O26:H11 str.
           11368]
 gi|260867083|ref|YP_003233485.1| 30S ribosomal subunit protein S1 [Escherichia coli O111:H- str.
           11128]
 gi|261227414|ref|ZP_05941695.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256163|ref|ZP_05948696.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281912|ref|YP_003498730.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
 gi|293404216|ref|ZP_06648210.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
 gi|293409288|ref|ZP_06652864.1| 30S ribosomal protein S1 [Escherichia coli B354]
 gi|293414191|ref|ZP_06656840.1| 30S ribosomal protein S1 [Escherichia coli B185]
 gi|293433208|ref|ZP_06661636.1| 30S ribosomal protein S1 [Escherichia coli B088]
 gi|297520622|ref|ZP_06939008.1| 30S ribosomal protein S1 [Escherichia coli OP50]
 gi|298379996|ref|ZP_06989601.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
 gi|300816985|ref|ZP_07097204.1| ribosomal protein S1 [Escherichia coli MS 107-1]
 gi|300823651|ref|ZP_07103778.1| ribosomal protein S1 [Escherichia coli MS 119-7]
 gi|300901659|ref|ZP_07119719.1| ribosomal protein S1 [Escherichia coli MS 198-1]
 gi|300902930|ref|ZP_07120875.1| ribosomal protein S1 [Escherichia coli MS 84-1]
 gi|300921052|ref|ZP_07137438.1| ribosomal protein S1 [Escherichia coli MS 115-1]
 gi|300925411|ref|ZP_07141296.1| ribosomal protein S1 [Escherichia coli MS 182-1]
 gi|300929606|ref|ZP_07145068.1| ribosomal protein S1 [Escherichia coli MS 187-1]
 gi|300949727|ref|ZP_07163705.1| ribosomal protein S1 [Escherichia coli MS 116-1]
 gi|300955441|ref|ZP_07167815.1| ribosomal protein S1 [Escherichia coli MS 175-1]
 gi|300978464|ref|ZP_07174279.1| ribosomal protein S1 [Escherichia coli MS 45-1]
 gi|300983139|ref|ZP_07176453.1| ribosomal protein S1 [Escherichia coli MS 200-1]
 gi|301022405|ref|ZP_07186288.1| ribosomal protein S1 [Escherichia coli MS 196-1]
 gi|301023014|ref|ZP_07186825.1| ribosomal protein S1 [Escherichia coli MS 69-1]
 gi|301047830|ref|ZP_07194881.1| ribosomal protein S1 [Escherichia coli MS 185-1]
 gi|301302481|ref|ZP_07208612.1| ribosomal protein S1 [Escherichia coli MS 124-1]
 gi|301326622|ref|ZP_07219955.1| ribosomal protein S1 [Escherichia coli MS 78-1]
 gi|301643431|ref|ZP_07243479.1| ribosomal protein S1 [Escherichia coli MS 146-1]
 gi|306812636|ref|ZP_07446829.1| 30S ribosomal protein S1 [Escherichia coli NC101]
 gi|307137540|ref|ZP_07496896.1| 30S ribosomal protein S1 [Escherichia coli H736]
 gi|307311702|ref|ZP_07591342.1| ribosomal protein S1 [Escherichia coli W]
 gi|309795105|ref|ZP_07689525.1| ribosomal protein S1 [Escherichia coli MS 145-7]
 gi|312969023|ref|ZP_07783230.1| ribosomal protein S1 [Escherichia coli 2362-75]
 gi|312971039|ref|ZP_07785218.1| ribosomal protein S1 [Escherichia coli 1827-70]
 gi|331641437|ref|ZP_08342572.1| ribosomal protein S1 [Escherichia coli H736]
 gi|331646176|ref|ZP_08347279.1| ribosomal protein S1 [Escherichia coli M605]
 gi|331651931|ref|ZP_08352950.1| ribosomal protein S1 [Escherichia coli M718]
 gi|331662324|ref|ZP_08363247.1| ribosomal protein S1 [Escherichia coli TA143]
 gi|331667288|ref|ZP_08368153.1| ribosomal protein S1 [Escherichia coli TA271]
 gi|331672450|ref|ZP_08373240.1| ribosomal protein S1 [Escherichia coli TA280]
 gi|331676699|ref|ZP_08377395.1| ribosomal protein S1 [Escherichia coli H591]
 gi|331682418|ref|ZP_08383037.1| ribosomal protein S1 [Escherichia coli H299]
 gi|332282184|ref|ZP_08394597.1| ribosomal protein S1 [Shigella sp. D9]
 gi|84028225|sp|P0AG69|RS1_ECO57 RecName: Full=30S ribosomal protein S1
 gi|84028226|sp|P0AG68|RS1_ECOL6 RecName: Full=30S ribosomal protein S1
 gi|84028227|sp|P0AG67|RS1_ECOLI RecName: Full=30S ribosomal protein S1
 gi|84028228|sp|P0AG70|RS1_SHIFL RecName: Full=30S ribosomal protein S1
 gi|12514077|gb|AAG55396.1|AE005280_7 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           EDL933]
 gi|26107336|gb|AAN79519.1|AE016758_123 30S ribosomal protein S1 [Escherichia coli CFT073]
 gi|1651439|dbj|BAA35655.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K12 substr.
           W3110]
 gi|1787140|gb|AAC73997.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. MG1655]
 gi|13360453|dbj|BAB34417.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           Sakai]
 gi|24051180|gb|AAN42537.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 301]
 gi|30040692|gb|AAP16423.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 2457T]
 gi|73854945|gb|AAZ87652.1| 30S ribosomal subunit protein S1 [Shigella sonnei Ss046]
 gi|81246061|gb|ABB66769.1| 30S ribosomal subunit protein S1 [Shigella boydii Sb227]
 gi|91071586|gb|ABE06467.1| 30S ribosomal subunit protein S1 [Escherichia coli UTI89]
 gi|110342700|gb|ABG68937.1| 30S ribosomal protein S1 [Escherichia coli 536]
 gi|110614467|gb|ABF03134.1| 30S ribosomal subunit protein S1 [Shigella flexneri 5 str. 8401]
 gi|115512253|gb|ABJ00328.1| RpsA [Escherichia coli APEC O1]
 gi|157066113|gb|ABV05368.1| ribosomal protein S1 [Escherichia coli HS]
 gi|157078847|gb|ABV18555.1| ribosomal protein S1 [Escherichia coli E24377A]
 gi|169755615|gb|ACA78314.1| ribosomal protein S1 [Escherichia coli ATCC 8739]
 gi|169888404|gb|ACB02111.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170121818|gb|EDS90749.1| ribosomal protein S1 [Escherichia albertii TW07627]
 gi|170520409|gb|ACB18587.1| ribosomal protein S1 [Escherichia coli SMS-3-5]
 gi|187430111|gb|ACD09385.1| ribosomal protein S1 [Shigella boydii CDC 3083-94]
 gi|188014741|gb|EDU52863.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
 gi|188488831|gb|EDU63934.1| ribosomal protein S1 [Escherichia coli 53638]
 gi|189355943|gb|EDU74362.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
 gi|189366807|gb|EDU85223.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
 gi|189372760|gb|EDU91176.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
 gi|189376455|gb|EDU94871.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
 gi|190907581|gb|EDV67176.1| ribosomal protein S1 [Escherichia coli F11]
 gi|192927716|gb|EDV82331.1| ribosomal protein S1 [Escherichia coli E22]
 gi|192955954|gb|EDV86422.1| ribosomal protein S1 [Escherichia coli E110019]
 gi|194413618|gb|EDX29899.1| ribosomal protein S1 [Escherichia coli B171]
 gi|194422382|gb|EDX38382.1| ribosomal protein S1 [Escherichia coli 101-1]
 gi|208732123|gb|EDZ80811.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
 gi|208738290|gb|EDZ85973.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
 gi|209158872|gb|ACI36305.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
 gi|209774868|gb|ACI85746.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774870|gb|ACI85747.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774872|gb|ACI85748.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774874|gb|ACI85749.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774876|gb|ACI85750.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209911420|dbj|BAG76494.1| 30S ribosomal protein S1 [Escherichia coli SE11]
 gi|215264108|emb|CAS08452.1| 30S ribosomal subunit protein S1 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322591|gb|EEC31015.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
 gi|218351116|emb|CAU96820.1| 30S ribosomal subunit protein S1 [Escherichia coli 55989]
 gi|218360266|emb|CAQ97816.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI1]
 gi|218364585|emb|CAR02271.1| 30S ribosomal subunit protein S1 [Escherichia coli S88]
 gi|218370556|emb|CAR18363.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI39]
 gi|218426315|emb|CAR07140.1| 30S ribosomal subunit protein S1 [Escherichia coli ED1a]
 gi|218431435|emb|CAR12313.1| 30S ribosomal subunit protein S1 [Escherichia coli UMN026]
 gi|222032642|emb|CAP75381.1| 30S ribosomal protein S1 [Escherichia coli LF82]
 gi|226898311|gb|EEH84570.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
 gi|227838876|gb|EEJ49342.1| 30S ribosomal protein S1 [Escherichia coli 83972]
 gi|238859783|gb|ACR61781.1| 30S ribosomal subunit protein S1 [Escherichia coli BW2952]
 gi|242376726|emb|CAQ31439.1| 30S ribosomal subunit protein S1, subunit of 30S ribosomal subunit
           and ribosome [Escherichia coli BL21(DE3)]
 gi|253325104|gb|ACT29706.1| ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972926|gb|ACT38597.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
 gi|253977140|gb|ACT42810.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
 gi|254591510|gb|ACT70871.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752851|dbj|BAI24353.1| 30S ribosomal subunit protein S1 [Escherichia coli O26:H11 str.
           11368]
 gi|257758308|dbj|BAI29805.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
           12009]
 gi|257763439|dbj|BAI34934.1| 30S ribosomal subunit protein S1 [Escherichia coli O111:H- str.
           11128]
 gi|260449943|gb|ACX40365.1| ribosomal protein S1 [Escherichia coli DH1]
 gi|281178042|dbj|BAI54372.1| 30S ribosomal protein S1 [Escherichia coli SE15]
 gi|281600271|gb|ADA73255.1| 30S ribosomal protein S1 [Shigella flexneri 2002017]
 gi|284920762|emb|CBG33825.1| 30S ribosomal protein S1 [Escherichia coli 042]
 gi|290761785|gb|ADD55746.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
 gi|291324027|gb|EFE63449.1| 30S ribosomal protein S1 [Escherichia coli B088]
 gi|291428802|gb|EFF01827.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
 gi|291434249|gb|EFF07222.1| 30S ribosomal protein S1 [Escherichia coli B185]
 gi|291469756|gb|EFF12240.1| 30S ribosomal protein S1 [Escherichia coli B354]
 gi|294493114|gb|ADE91870.1| ribosomal protein S1 [Escherichia coli IHE3034]
 gi|298279694|gb|EFI21202.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
 gi|299881246|gb|EFI89457.1| ribosomal protein S1 [Escherichia coli MS 196-1]
 gi|300300289|gb|EFJ56674.1| ribosomal protein S1 [Escherichia coli MS 185-1]
 gi|300306973|gb|EFJ61493.1| ribosomal protein S1 [Escherichia coli MS 200-1]
 gi|300317664|gb|EFJ67448.1| ribosomal protein S1 [Escherichia coli MS 175-1]
 gi|300354952|gb|EFJ70822.1| ribosomal protein S1 [Escherichia coli MS 198-1]
 gi|300397275|gb|EFJ80813.1| ribosomal protein S1 [Escherichia coli MS 69-1]
 gi|300405072|gb|EFJ88610.1| ribosomal protein S1 [Escherichia coli MS 84-1]
 gi|300409641|gb|EFJ93179.1| ribosomal protein S1 [Escherichia coli MS 45-1]
 gi|300411990|gb|EFJ95300.1| ribosomal protein S1 [Escherichia coli MS 115-1]
 gi|300418481|gb|EFK01792.1| ribosomal protein S1 [Escherichia coli MS 182-1]
 gi|300450875|gb|EFK14495.1| ribosomal protein S1 [Escherichia coli MS 116-1]
 gi|300462443|gb|EFK25936.1| ribosomal protein S1 [Escherichia coli MS 187-1]
 gi|300523851|gb|EFK44920.1| ribosomal protein S1 [Escherichia coli MS 119-7]
 gi|300530337|gb|EFK51399.1| ribosomal protein S1 [Escherichia coli MS 107-1]
 gi|300842320|gb|EFK70080.1| ribosomal protein S1 [Escherichia coli MS 124-1]
 gi|300846705|gb|EFK74465.1| ribosomal protein S1 [Escherichia coli MS 78-1]
 gi|301078145|gb|EFK92951.1| ribosomal protein S1 [Escherichia coli MS 146-1]
 gi|305853399|gb|EFM53838.1| 30S ribosomal protein S1 [Escherichia coli NC101]
 gi|306908257|gb|EFN38756.1| ribosomal protein S1 [Escherichia coli W]
 gi|307552750|gb|ADN45525.1| 30S ribosomal protein [Escherichia coli ABU 83972]
 gi|307627662|gb|ADN71966.1| 30S ribosomal protein S1 [Escherichia coli UM146]
 gi|308121409|gb|EFO58671.1| ribosomal protein S1 [Escherichia coli MS 145-7]
 gi|309701187|emb|CBJ00487.1| 30S ribosomal protein S1 [Escherichia coli ETEC H10407]
 gi|310336800|gb|EFQ01967.1| ribosomal protein S1 [Escherichia coli 1827-70]
 gi|312286425|gb|EFR14338.1| ribosomal protein S1 [Escherichia coli 2362-75]
 gi|312945431|gb|ADR26258.1| 30S ribosomal protein S1 [Escherichia coli O83:H1 str. NRG 857C]
 gi|313650850|gb|EFS15251.1| ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
 gi|315060196|gb|ADT74523.1| 30S ribosomal subunit protein S1 [Escherichia coli W]
 gi|315135559|dbj|BAJ42718.1| 30S ribosomal protein S1 [Escherichia coli DH1]
 gi|315257952|gb|EFU37920.1| ribosomal protein S1 [Escherichia coli MS 85-1]
 gi|315287526|gb|EFU46937.1| ribosomal protein S1 [Escherichia coli MS 110-3]
 gi|315291242|gb|EFU50602.1| ribosomal protein S1 [Escherichia coli MS 153-1]
 gi|315296193|gb|EFU55501.1| ribosomal protein S1 [Escherichia coli MS 16-3]
 gi|315619105|gb|EFU99685.1| ribosomal protein S1 [Escherichia coli 3431]
 gi|320173252|gb|EFW48461.1| SSU ribosomal protein S1p [Shigella dysenteriae CDC 74-1112]
 gi|320182021|gb|EFW56926.1| SSU ribosomal protein S1p [Shigella boydii ATCC 9905]
 gi|320192603|gb|EFW67244.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. EC1212]
 gi|320196595|gb|EFW71218.1| SSU ribosomal protein S1p [Escherichia coli WV_060327]
 gi|320202307|gb|EFW76878.1| SSU ribosomal protein S1p [Escherichia coli EC4100B]
 gi|320637779|gb|EFX07571.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. G5101]
 gi|320642904|gb|EFX12105.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. 493-89]
 gi|320648361|gb|EFX17016.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. H 2687]
 gi|320653677|gb|EFX21751.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320659822|gb|EFX27378.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664291|gb|EFX31442.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. LSU-61]
 gi|323157202|gb|EFZ43325.1| ribosomal protein S1 [Escherichia coli EPECa14]
 gi|323159537|gb|EFZ45517.1| ribosomal protein S1 [Escherichia coli E128010]
 gi|323165378|gb|EFZ51165.1| ribosomal protein S1 [Shigella sonnei 53G]
 gi|323174988|gb|EFZ60603.1| ribosomal protein S1 [Escherichia coli LT-68]
 gi|323175466|gb|EFZ61061.1| ribosomal protein S1 [Escherichia coli 1180]
 gi|323185383|gb|EFZ70747.1| ribosomal protein S1 [Escherichia coli 1357]
 gi|323190731|gb|EFZ76000.1| ribosomal protein S1 [Escherichia coli RN587/1]
 gi|323379244|gb|ADX51512.1| ribosomal protein S1 [Escherichia coli KO11]
 gi|323938017|gb|EGB34279.1| ribosomal protein S1 [Escherichia coli E1520]
 gi|323942827|gb|EGB38992.1| ribosomal protein S1 [Escherichia coli E482]
 gi|323947300|gb|EGB43308.1| ribosomal protein S1 [Escherichia coli H120]
 gi|323953382|gb|EGB49248.1| ribosomal protein S1 [Escherichia coli H252]
 gi|323958216|gb|EGB53925.1| ribosomal protein S1 [Escherichia coli H263]
 gi|323962903|gb|EGB58477.1| ribosomal protein S1 [Escherichia coli H489]
 gi|323967158|gb|EGB62582.1| ribosomal protein S1 [Escherichia coli M863]
 gi|323973214|gb|EGB68406.1| ribosomal protein S1 [Escherichia coli TA007]
 gi|323976702|gb|EGB71790.1| ribosomal protein S1 [Escherichia coli TW10509]
 gi|324009837|gb|EGB79056.1| ribosomal protein S1 [Escherichia coli MS 57-2]
 gi|324012971|gb|EGB82190.1| ribosomal protein S1 [Escherichia coli MS 60-1]
 gi|324019080|gb|EGB88299.1| ribosomal protein S1 [Escherichia coli MS 117-3]
 gi|324117224|gb|EGC11132.1| ribosomal protein S1 [Escherichia coli E1167]
 gi|326338194|gb|EGD62023.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1125]
 gi|326346171|gb|EGD69909.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1044]
 gi|327253701|gb|EGE65330.1| ribosomal protein S1 [Escherichia coli STEC_7v]
 gi|330910691|gb|EGH39201.1| SSU ribosomal protein S1p [Escherichia coli AA86]
 gi|331038235|gb|EGI10455.1| ribosomal protein S1 [Escherichia coli H736]
 gi|331044928|gb|EGI17055.1| ribosomal protein S1 [Escherichia coli M605]
 gi|331050209|gb|EGI22267.1| ribosomal protein S1 [Escherichia coli M718]
 gi|331060746|gb|EGI32710.1| ribosomal protein S1 [Escherichia coli TA143]
 gi|331065644|gb|EGI37537.1| ribosomal protein S1 [Escherichia coli TA271]
 gi|331070356|gb|EGI41721.1| ribosomal protein S1 [Escherichia coli TA280]
 gi|331075388|gb|EGI46686.1| ribosomal protein S1 [Escherichia coli H591]
 gi|331080049|gb|EGI51228.1| ribosomal protein S1 [Escherichia coli H299]
 gi|332091768|gb|EGI96847.1| ribosomal protein S1 [Shigella dysenteriae 155-74]
 gi|332093268|gb|EGI98328.1| ribosomal protein S1 [Shigella boydii 5216-82]
 gi|332093334|gb|EGI98392.1| ribosomal protein S1 [Shigella boydii 3594-74]
 gi|332104536|gb|EGJ07882.1| ribosomal protein S1 [Shigella sp. D9]
 gi|332342354|gb|AEE55688.1| ribosomal protein RpsA [Escherichia coli UMNK88]
 gi|332758996|gb|EGJ89306.1| ribosomal protein S1 [Shigella flexneri 4343-70]
 gi|332760108|gb|EGJ90406.1| ribosomal protein S1 [Shigella flexneri 2747-71]
 gi|332762680|gb|EGJ92943.1| ribosomal protein S1 [Shigella flexneri K-671]
 gi|332767858|gb|EGJ98048.1| ribosomal protein S1 [Shigella flexneri 2930-71]
 gi|333006352|gb|EGK25860.1| ribosomal protein S1 [Shigella flexneri VA-6]
 gi|333007009|gb|EGK26504.1| ribosomal protein S1 [Shigella flexneri K-218]
 gi|333008889|gb|EGK28349.1| ribosomal protein S1 [Shigella flexneri K-272]
 gi|333020060|gb|EGK39331.1| ribosomal protein S1 [Shigella flexneri K-304]
 gi|333020199|gb|EGK39469.1| ribosomal protein S1 [Shigella flexneri K-227]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|283784737|ref|YP_003364602.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
 gi|282948191|emb|CBG87758.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|258515025|ref|YP_003191247.1| RNA binding S1 domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778730|gb|ACV62624.1| RNA binding S1 domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 718

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFGAFV      DG+VH S+L T R +   DV+  GD V VK+L  D +R +
Sbjct: 650 KGTVRNVVDFGAFVDIGVKVDGMVHKSELGTRRFSHPMDVLSVGDIVTVKVLSVDLERQR 709

Query: 683 IKLSM 687
           + L++
Sbjct: 710 VALTL 714


>gi|156934599|ref|YP_001438515.1| 30S ribosomal protein S1 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532853|gb|ABU77679.1| hypothetical protein ESA_02433 [Cronobacter sakazakii ATCC BAA-894]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|291547263|emb|CBL20371.1| Transcriptional accessory protein [Ruminococcus sp. SR1/5]
          Length = 718

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHIS++S + +    + V  GD V V++L  D  +
Sbjct: 647 VLKGTVRNVIDFGAFVDIGVHQDGLVHISEMSEKFIKHPLEAVSVGDIVDVRVLGVDMKK 706

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 707 KRISLSMK 714


>gi|300024890|ref|YP_003757501.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526711|gb|ADJ25180.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
          Length = 237

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 28/234 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S +  + +   GS L   GDT  +   +L    +E+    L G  R
Sbjct: 1   MRPSKRKPDELRRVSIERAVSKHAEGSCLIKFGDTHVLCTASL----EERLPQWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPV--LPQTAQFPYTLRI 425
                 Y+ LP AT E +R     G PS R     RL  RA+  V  LP+  +   T  +
Sbjct: 57  GWVTAEYSMLPRATHERTRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQIT--V 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDF 473
             ++ ++DG +  A++ G+ +AL D             GV +   VA ++ G+ K GD  
Sbjct: 115 DCDVIQADGGTRTASITGAWVALHDCIQWMKMRDMVKDGV-LRDHVAAVSCGIYK-GDPV 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           + L D + D +     +F + GT  GI  +Q   +    +E      L  AK+G
Sbjct: 173 LDL-DYAEDSNADADSNFVMTGT-GGIVEIQGTAETTPFTEERFGDLLTLAKKG 224


>gi|114565663|ref|YP_752817.1| RNA binding S1 [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336598|gb|ABI67446.1| RNA binding S1 [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 152

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+V  +  FGAF+   G   GLVHIS+++   V    D +KEG++V VK+L+   + 
Sbjct: 13  IMEGKVQGITKFGAFIELPGGVVGLVHISEIADTYVKDVKDFIKEGESVKVKVLNVAGK- 71

Query: 682 KIKLSMKVV 690
           KI LS+K V
Sbjct: 72  KIGLSIKQV 80


>gi|291279040|ref|YP_003495875.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
 gi|290753742|dbj|BAI80119.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
          Length = 707

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V  V DFGAFV      D LVHIS+L+ + V    DVV  GD V   ++  D DR +
Sbjct: 641 RGKVTNVTDFGAFVDIGLKNDALVHISELADKFVKHPLDVVSVGDNVLATVIKVDKDRNR 700

Query: 683 IKLSMK 688
           + LS++
Sbjct: 701 VSLSLR 706


>gi|229824542|ref|ZP_04450611.1| hypothetical protein GCWU000282_01886 [Catonella morbi ATCC 51271]
 gi|229785913|gb|EEP22027.1| hypothetical protein GCWU000282_01886 [Catonella morbi ATCC 51271]
          Length = 166

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  +  FGAF+     + GLVHIS++S   V + S V+  G  V VK+L  
Sbjct: 4   EVGQKITGKVTGITHFGAFISLPDNKTGLVHISEVSDGYVKEISSVLTVGQEVAVKVLSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  ADDGKISLSIR 74


>gi|237653696|ref|YP_002890010.1| 30S ribosomal protein S1 [Thauera sp. MZ1T]
 gi|237624943|gb|ACR01633.1| ribosomal protein S1 [Thauera sp. MZ1T]
          Length = 567

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 23/184 (12%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE---------IMAIPPDQ------IRN 565
           L + K  R+   N++ K L+E  L  G  T RV+         I A  P        +++
Sbjct: 91  LSRDKAKRIAAWNDLEKALNEGTLVKGVITGRVKGGLTVMTNSIRAFLPGSLVDMRPVKD 150

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
                GK     V +   K N      V ++  ++ E     E  + + ++ E   + KG
Sbjct: 151 TTPYEGKEYEFKVIKLDRKRN-----NVVVSRRAVLEESMGEEREKLLANLKE-GTVIKG 204

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++ ++ 
Sbjct: 205 VVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGDEIEAKVLKFDQEKNRVS 263

Query: 685 LSMK 688
           L +K
Sbjct: 264 LGLK 267



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 282 PQGTRLF-GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMIL 340

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 341 EIDEDRRRISLGMK 354



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG F+   G  DGLVH+S LS +E         K+GD V   +L  D +R 
Sbjct: 375 RGQIKSITDFGVFIGLEGGIDGLVHLSDLSWSESGEDAVRRFKKGDEVEAVVLAIDVERE 434

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L +K   Q  G P
Sbjct: 435 RISLGIK---QLEGDP 447


>gi|153954192|ref|YP_001394957.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium kluyveri DSM 555]
 gi|146347073|gb|EDK33609.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-related protein
           [Clostridium kluyveri DSM 555]
          Length = 637

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +G+V ++ DFGAFV   G  DGL+H+S+LS  RV K  DV+K GD + V +LD +
Sbjct: 480 VVEGEVRRLTDFGAFVDVQGV-DGLLHVSELSWGRVNKPGDVLKIGDKIQVYILDVN 535



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+VV+  +FGAFV      D LVHISQ+S +R+ K SD ++    +  K+L+ +    KI
Sbjct: 568 GKVVRFANFGAFVELEPGVDALVHISQISHKRIDKPSDALEIEQEIKAKILEVNKESEKI 627

Query: 684 KLSMKVVDQ 692
            LS+K VD+
Sbjct: 628 ALSIKEVDE 636


>gi|146311087|ref|YP_001176161.1| 30S ribosomal protein S1 [Enterobacter sp. 638]
 gi|145317963|gb|ABP60110.1| SSU ribosomal protein S1P [Enterobacter sp. 638]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|300937745|ref|ZP_07152546.1| ribosomal protein S1 [Escherichia coli MS 21-1]
 gi|300457252|gb|EFK20745.1| ribosomal protein S1 [Escherichia coli MS 21-1]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|326791021|ref|YP_004308842.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
 gi|326541785|gb|ADZ83644.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
          Length = 382

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++   +A  +A  E  + +  + E  K+  G V K+M +GAFV   G  +GLVH + LS 
Sbjct: 172 LSGKRIATEKAQAEKTQKLAALVEGEKV-SGTVTKLMPYGAFVDLGGV-EGLVHNTDLSW 229

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
            R+   SDVVKEGD V V +   D   GKI LS+K
Sbjct: 230 VRIKHPSDVVKEGDKVDVIISSVDQSTGKIALSLK 264



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +   +V +   FGAF       +GL+HISQ+S +R+ K  + ++ G  V  K++  
Sbjct: 279 EVGDVVPAKVTRFASFGAFAAIADGLEGLIHISQISEKRINKPEEALEIGQEVQAKIVTI 338

Query: 678 DDRG-KIKLSMK 688
           D    KI LS+K
Sbjct: 339 DKEAKKIGLSLK 350


>gi|302868826|ref|YP_003837463.1| RNA binding S1 domain-containing protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|315504704|ref|YP_004083591.1| RNA binding s1 domain protein [Micromonospora sp. L5]
 gi|302571685|gb|ADL47887.1| RNA binding S1 domain protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315411323|gb|ADU09440.1| RNA binding S1 domain protein [Micromonospora sp. L5]
          Length = 494

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V
Sbjct: 288 RQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEV 347

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            VK++D D +R +I LS+K  ++
Sbjct: 348 MVKVIDIDLERRRISLSLKQANE 370



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+ KGQV K     +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V+
Sbjct: 206 LNKLQKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQEVEVE 264

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D DR ++ LS+K   ++
Sbjct: 265 VLDVDLDRERVSLSLKATQED 285


>gi|82777566|ref|YP_403915.1| 30S ribosomal protein S1 [Shigella dysenteriae Sd197]
 gi|309787782|ref|ZP_07682392.1| ribosomal protein S1 [Shigella dysenteriae 1617]
 gi|81241714|gb|ABB62424.1| 30S ribosomal subunit protein S1 [Shigella dysenteriae Sd197]
 gi|308924181|gb|EFP69678.1| ribosomal protein S1 [Shigella dysenteriae 1617]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|320184257|gb|EFW59070.1| SSU ribosomal protein S1p [Shigella flexneri CDC 796-83]
          Length = 560

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|311280175|ref|YP_003942406.1| ribosomal protein S1 [Enterobacter cloacae SCF1]
 gi|308749370|gb|ADO49122.1| ribosomal protein S1 [Enterobacter cloacae SCF1]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|218548427|ref|YP_002382218.1| 30S ribosomal protein S1 [Escherichia fergusonii ATCC 35469]
 gi|218355968|emb|CAQ88584.1| 30S ribosomal subunit protein S1 [Escherichia fergusonii ATCC
           35469]
 gi|324113758|gb|EGC07733.1| ribosomal protein S1 [Escherichia fergusonii B253]
 gi|325496850|gb|EGC94709.1| 30S ribosomal protein S1 [Escherichia fergusonii ECD227]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|212709792|ref|ZP_03317920.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
           30120]
 gi|212687603|gb|EEB47131.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
           30120]
          Length = 582

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E++ E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 190 NVVVSRRAVIESESSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDLGGV-DGLLHITD 247

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L FD +R ++ L +K
Sbjct: 248 MAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 285


>gi|212637905|ref|YP_002314425.1| RNA binding protein (S1 domain) [Anoxybacillus flavithermus WK1]
 gi|212559385|gb|ACJ32440.1| RNA binding protein (S1 domain) [Anoxybacillus flavithermus WK1]
          Length = 152

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   ++ +K GD V V++++ 
Sbjct: 26  EVGSKLQGKVTGITKFGAFVELPEGATGLVHISEVADSYVKDINEHLKVGDVVEVRVINV 85

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           +  GKI LS+K   +   +P
Sbjct: 86  EKDGKIGLSIKKAKEQASRP 105


>gi|54778754|gb|AAV39588.1| ribosomal protein S1 [synthetic construct]
          Length = 584

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 220 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 278

Query: 683 IKLSMK 688
           + L +K
Sbjct: 279 VSLGLK 284


>gi|78048052|ref|YP_364227.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036482|emb|CAJ24173.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 561

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L 
Sbjct: 365 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNYKKGDTLEAVVLA 422

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 423 VDPERERISLGVKQLEQD 440


>gi|61215895|sp|Q6A759|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 244

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 6   RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASV----TEGVPRWRKGSGLG 61

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    G  SR G    R     RL  R++  V+   A    T+ +  +
Sbjct: 62  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GVPISKPVAG----IAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA       G  +S+P+ G    I++G+V    D I + 
Sbjct: 122 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED     D  V  + +G
Sbjct: 178 DLAYKEDSRADTDMNVVMSGNG 199


>gi|223404|prf||0804233A protein S1
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|325915995|ref|ZP_08178288.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
 gi|325537805|gb|EGD09508.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
          Length = 562

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L 
Sbjct: 365 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNYKKGDTLEAVVLA 422

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 423 VDPERERISLGVKQLEQD 440


>gi|319956088|ref|YP_004167351.1| SSU ribosomal protein s1p [Nitratifractor salsuginis DSM 16511]
 gi|319418492|gb|ADV45602.1| SSU ribosomal protein S1P [Nitratifractor salsuginis DSM 16511]
          Length = 556

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G V  V DFGAFV   G  +GL+H  + S ++  +  D+   GD V VK++  D
Sbjct: 370 VGDIVTGTVSSVTDFGAFVRLDGGVEGLLHNQEASWDKSKRAKDLFNVGDEVEVKIIKID 429

Query: 679 -DRGKIKLSMKVVDQN 693
            D GKI LS K ++++
Sbjct: 430 TDAGKISLSKKALEKS 445



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 7/107 (6%)

Query: 589 DDGTVKIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D G+V I+   L E + AR  E++  + +  E      G V K+  +G FV   G  DGL
Sbjct: 169 DKGSVVISRKELIERDKARVNEIVEKLLESKEP---VVGTVKKITSYGMFVD-VGGMDGL 224

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VH SQ+S +     S   +EGD V V  LD+ D+ K  LS+ + + N
Sbjct: 225 VHYSQISHKGPVNPSKYYQEGDEVNVVALDY-DKKKRHLSLSIKEAN 270


>gi|317047558|ref|YP_004115206.1| 30S ribosomal protein S1 [Pantoea sp. At-9b]
 gi|316949175|gb|ADU68650.1| ribosomal protein S1 [Pantoea sp. At-9b]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|229492760|ref|ZP_04386561.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
 gi|229320419|gb|EEN86239.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
          Length = 495

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  
Sbjct: 285 RQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 LVKVIDIDLERRRISLSLKQANED 368



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 210 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|261339245|ref|ZP_05967103.1| hypothetical protein ENTCAN_05481 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319102|gb|EFC58040.1| ribosomal protein S1 [Enterobacter cancerogenus ATCC 35316]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|157146403|ref|YP_001453721.1| 30S ribosomal protein S1 [Citrobacter koseri ATCC BAA-895]
 gi|157083608|gb|ABV13286.1| hypothetical protein CKO_02162 [Citrobacter koseri ATCC BAA-895]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|126669095|ref|ZP_01740026.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
 gi|126626450|gb|EAZ97116.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
          Length = 455

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ ++T+   +    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 67  AENSAEREALLETLTEGLTI----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 121

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L FD +R ++ L +K
Sbjct: 122 PSEIVNVGDEINVKVLKFDRERNRVSLGLK 151



 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 166 PEGSKVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVGVMIL 224

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 225 DIDEERRRISLGIK 238



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD V   +L  D +R +
Sbjct: 260 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREYKKGDEVDTVILSVDPERER 319

Query: 683 IKLSMK 688
           I L +K
Sbjct: 320 ISLGIK 325


>gi|295096388|emb|CBK85478.1| SSU ribosomal protein S1P [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|167770408|ref|ZP_02442461.1| hypothetical protein ANACOL_01751 [Anaerotruncus colihominis DSM
           17241]
 gi|167667415|gb|EDS11545.1| hypothetical protein ANACOL_01751 [Anaerotruncus colihominis DSM
           17241]
          Length = 721

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFG FV     +DGLVHISQ++   +   S+V++ GD  TVWV  +D   + 
Sbjct: 649 RGTVRNVIDFGVFVDIGVHQDGLVHISQITNRYIRHPSEVLRVGDIVTVWVLSVDVPKK- 707

Query: 682 KIKLSMK 688
           +I L+MK
Sbjct: 708 RISLTMK 714


>gi|320539238|ref|ZP_08038908.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
 gi|320030630|gb|EFW12639.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
          Length = 558

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD V +K+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEVTIKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|254524507|ref|ZP_05136562.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
 gi|219722098|gb|EED40623.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
          Length = 561

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L  D +R
Sbjct: 370 GQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNFKKGDTLDAVVLAVDPER 427

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++Q+
Sbjct: 428 ERISLGVKQLEQD 440


>gi|94266273|ref|ZP_01289978.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
 gi|93453124|gb|EAT03595.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
          Length = 530

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E AR+ +R+ +    E  ++  G V  + D+G FV   G  DGL HI+ LS  R
Sbjct: 138 SRRAIMEEARQQLRNEMRGTLEEGQVLTGTVTNITDYGVFVDL-GGMDGLCHITDLSWGR 196

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+  S + K GD + VK+L +D +  K+ L +K
Sbjct: 197 VSHPSKMFKVGDDIQVKVLKYDQENDKVSLGVK 229



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVVKEGDTVWVKLLDFDDRGK- 682
           G+VV + D+GAFV      +GLVHIS++S  + ++  S +V  GD V V +L+ D   K 
Sbjct: 251 GKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVTVGDEVEVSVLNVDPEAKR 310

Query: 683 IKLSMKVVDQN 693
           I L MK +  N
Sbjct: 311 ISLGMKQLQPN 321



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           +G++  V DFG FV      +GL+H+S+LS E+V     +   GDT+  ++++    DR 
Sbjct: 424 EGKITNVTDFGVFVELEEGIEGLIHVSELSKEKVETPVGLYNVGDTIEARVINVSAKDR- 482

Query: 682 KIKLSMKVV 690
           KI LS+K +
Sbjct: 483 KIGLSIKAL 491



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +G++  + DFG F+      DGL+H+S LS TER+    +   +G+T+   +L  D
Sbjct: 335 IIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKGETIQAVVLKID 392


>gi|21231633|ref|NP_637550.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768245|ref|YP_243007.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991381|ref|YP_001903391.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113326|gb|AAM41474.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573577|gb|AAY48987.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733141|emb|CAP51339.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris]
          Length = 559

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L 
Sbjct: 365 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNYKKGDTLEAVVLA 422

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 423 VDPERERISLGVKQLEQD 440


>gi|21243033|ref|NP_642615.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|289665787|ref|ZP_06487368.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289671206|ref|ZP_06492281.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|294624737|ref|ZP_06703403.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294664331|ref|ZP_06729696.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325925941|ref|ZP_08187309.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
 gi|21108543|gb|AAM37151.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|292600971|gb|EFF45042.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605897|gb|EFF49183.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325543664|gb|EGD15079.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
          Length = 561

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L 
Sbjct: 365 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNYKKGDTLEAVVLA 422

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 423 VDPERERISLGVKQLEQD 440


>gi|296103087|ref|YP_003613233.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057546|gb|ADF62284.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|193213386|ref|YP_001999339.1| 30S ribosomal protein S1 [Chlorobaculum parvum NCIB 8327]
 gi|193086863|gb|ACF12139.1| RNA binding S1 domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 583

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+G  + VK+L FD +
Sbjct: 390 LHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKGQELEVKVLKFDVN 449

Query: 680 RGKIKLSMKVVDQN 693
             +I L  K ++ +
Sbjct: 450 ARRIALGHKQINND 463



 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S T+ +   S  V     V V +L+ D +  K
Sbjct: 306 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQDVEVVILNIDKEHTK 365

Query: 683 IKLSMKVV 690
           + LSMK V
Sbjct: 366 LSLSMKRV 373



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AA+  EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 198 LEEEYAAKREEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRI 252

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
              S+VV+    + V ++ FD+  K + L MK
Sbjct: 253 NHPSEVVELDQPIKVVVVGFDENTKRVSLGMK 284


>gi|168187048|ref|ZP_02621683.1| ribosomal protein S1 domain family protein [Clostridium botulinum C
           str. Eklund]
 gi|169295087|gb|EDS77220.1| ribosomal protein S1 domain family protein [Clostridium botulinum C
           str. Eklund]
          Length = 135

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  DD G
Sbjct: 8   ILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISVDDNG 66

Query: 682 KIKLSMK 688
           ++ LS+K
Sbjct: 67  RLSLSIK 73


>gi|166712378|ref|ZP_02243585.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 561

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L 
Sbjct: 365 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNYKKGDTLEAVVLA 422

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 423 VDPERERISLGVKQLEQD 440


>gi|42837|emb|CAA23630.1| unnamed protein product [Escherichia coli]
          Length = 556

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 195 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 253

Query: 683 IKLSMK 688
           + L +K
Sbjct: 254 VSLGLK 259


>gi|190574008|ref|YP_001971853.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia K279a]
 gi|190011930|emb|CAQ45551.1| putative 30S ribosomal protein S1 [Stenotrophomonas maltophilia
           K279a]
          Length = 561

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L  D +R
Sbjct: 370 GQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNFKKGDTLDAVVLAVDPER 427

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++Q+
Sbjct: 428 ERISLGVKQLEQD 440


>gi|58581803|ref|YP_200819.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623707|ref|YP_451079.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576640|ref|YP_001913569.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426397|gb|AAW75434.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367647|dbj|BAE68805.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521092|gb|ACD59037.1| ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 561

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L 
Sbjct: 365 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNYKKGDTLEAVVLA 422

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 423 VDPERERISLGVKQLEQD 440


>gi|291616906|ref|YP_003519648.1| RpsA [Pantoea ananatis LMG 20103]
 gi|291151936|gb|ADD76520.1| RpsA [Pantoea ananatis LMG 20103]
 gi|327393334|dbj|BAK10756.1| 30S ribosomal protein S1 RpsA [Pantoea ananatis AJ13355]
          Length = 569

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|194365424|ref|YP_002028034.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
 gi|194348228|gb|ACF51351.1| ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
          Length = 561

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           GQ+  + DFG F+   G  DGLVH+S +S     +  D+V   K+GDT+   +L  D +R
Sbjct: 370 GQIKSITDFGIFIGLDGGIDGLVHLSDISWATTGE--DIVRNFKKGDTLDAVVLAVDPER 427

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++Q+
Sbjct: 428 ERISLGVKQLEQD 440


>gi|226306799|ref|YP_002766759.1| 30S ribosomal protein S1 [Rhodococcus erythropolis PR4]
 gi|226185916|dbj|BAH34020.1| probable 30S ribosomal protein S1 [Rhodococcus erythropolis PR4]
          Length = 495

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  
Sbjct: 285 RQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 LVKVIDIDLERRRISLSLKQANED 368



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 210 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|332533241|ref|ZP_08409108.1| transcription accessory protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037320|gb|EGI73775.1| transcription accessory protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 797

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ D  R
Sbjct: 651 ILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKVKVVEVDAAR 710

Query: 681 GKIKLSMKVVD 691
            +I  +M++ D
Sbjct: 711 KRISFTMRLDD 721


>gi|285018380|ref|YP_003376091.1| 30s ribosomal protein s1 [Xanthomonas albilineans GPE PC73]
 gi|283473598|emb|CBA16101.1| 30s ribosomal protein s1 [Xanthomonas albilineans]
          Length = 559

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R
Sbjct: 195 ILKGVVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  D+V   K+GDT+   +L 
Sbjct: 365 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DIVRNFKKGDTLEAVVLA 422

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 423 VDPERERISLGVKQLEQD 440


>gi|42900|emb|CAA23644.1| S1 ribosomal protein [Escherichia coli]
          Length = 556

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 195 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 253

Query: 683 IKLSMK 688
           + L +K
Sbjct: 254 VSLGLK 259


>gi|56964674|ref|YP_176405.1| general stress protein 13 [Bacillus clausii KSM-K16]
 gi|56910917|dbj|BAD65444.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
           KSM-K16]
          Length = 133

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G+V  +  FGAFV     + GLVHIS+++   V   +DV+  GD V VK++  
Sbjct: 5   EEGSIVEGKVTGIKPFGAFVAIDEKKQGLVHISEVAHGYVKDIADVLAVGDEVKVKIMSV 64

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           D+  GKI LS++   +   +P
Sbjct: 65  DEESGKISLSIRATQEAPARP 85


>gi|315128002|ref|YP_004070005.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
 gi|315016516|gb|ADT69854.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
          Length = 774

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ D  R
Sbjct: 651 ILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKVKVVEVDAAR 710

Query: 681 GKIKLSMKVVD 691
            +I  +M++ D
Sbjct: 711 KRISFTMRLDD 721


>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
 gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
          Length = 263

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D   R DGR    +RD+S  +       GS+L   G TQ +V V  G RE +    +
Sbjct: 10  ILNDAGFRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVH-GPREAKMRSHT 68

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
                R +  +       +TGE  +     +R +      +    PV+ +T+ +P + + 
Sbjct: 69  FH--DRANINVEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVV-RTSLYPRSQID 125

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           I  +I + DG +    + G++LAL++AG+P+S  V  I+ G+
Sbjct: 126 IYIQILQQDGGTLQTCINGTTLALINAGIPMSDFVCAISGGV 167


>gi|118580726|ref|YP_901976.1| ribonuclease PH [Pelobacter propionicus DSM 2379]
 gi|118503436|gb|ABK99918.1| RNAse PH [Pelobacter propionicus DSM 2379]
          Length = 239

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 25/203 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR +GRDS  +R ++      +   G+ L   GDT+ I   ++    +E     L G   
Sbjct: 2   VRKNGRDSRALRPVAITRNFTKYAEGAVLVEFGDTRVICTASV----EESVPSFLRGRGT 57

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E S+ G  S R +   RL  R++  V    A    ++ + 
Sbjct: 58  GWVTAEYSMLPRATHTRSSREASK-GKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL DA            +P+ + VA +++G+V  G+  + 
Sbjct: 117 CDVLQADGGTRTASITGAYVALADALATLKQRGLLERIPLREAVAAVSVGIV-GGESLL- 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDS 498
             D+  DED    +D     T S
Sbjct: 175 --DLDYDEDSSAEVDMNFVMTSS 195


>gi|88798958|ref|ZP_01114539.1| 30S ribosomal protein S1 [Reinekea sp. MED297]
 gi|88778185|gb|EAR09379.1| 30S ribosomal protein S1 [Reinekea sp. MED297]
          Length = 560

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVQVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S  E   +     K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNESGEEAVRKYKKGDELETTILSIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K +D +
Sbjct: 429 ISLGIKQLDMD 439



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD + V +L
Sbjct: 275 PEEAKVT-AKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEIEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGIK 347


>gi|182420080|ref|ZP_02951314.1| RNA-binding protein [Clostridium butyricum 5521]
 gi|237669482|ref|ZP_04529462.1| RNA binding S1 domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376117|gb|EDT73704.1| RNA-binding protein [Clostridium butyricum 5521]
 gi|237654926|gb|EEP52486.1| putative RNA-binding protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 134

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V+ + +FGAF+   G + GLVHIS+++   V    + + E D V VK++  DD G
Sbjct: 8   IVEGTVINITNFGAFIEVEG-KTGLVHISEVADSYVKDIREHLNEQDKVKVKVISIDDNG 66

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 67  KISLSIK 73


>gi|15838756|ref|NP_299444.1| transcription-related protein [Xylella fastidiosa 9a5c]
 gi|9107302|gb|AAF84964.1|AE004030_10 transcription-related protein [Xylella fastidiosa 9a5c]
          Length = 772

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +A R  E + +I D+ +   I +G V  V  FGAFV     +DGL+HIS L+   V  
Sbjct: 636 EFKAVRFTEGVENIKDL-KPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKD 694

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             D+VK GD V VK+L+ D  R +I L+ ++ ++ 
Sbjct: 695 PRDIVKAGDIVKVKVLEIDVPRKRIALTCRLHEET 729


>gi|71276295|ref|ZP_00652573.1| RNA binding S1 [Xylella fastidiosa Dixon]
 gi|71900306|ref|ZP_00682442.1| RNA binding S1 [Xylella fastidiosa Ann-1]
 gi|71162903|gb|EAO12627.1| RNA binding S1 [Xylella fastidiosa Dixon]
 gi|71729954|gb|EAO32049.1| RNA binding S1 [Xylella fastidiosa Ann-1]
          Length = 772

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +A R  E + +I D+ +   I +G V  V  FGAFV     +DGL+HIS L+   V  
Sbjct: 636 EFKAVRFTEGVENIKDL-KPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKD 694

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             D+VK GD V VK+L+ D  R +I L+ ++ ++ 
Sbjct: 695 PRDIVKAGDIVKVKVLEIDLPRKRIALTCRLHEET 729


>gi|325954411|ref|YP_004238071.1| RNA binding S1 domain protein [Weeksella virosa DSM 16922]
 gi|323437029|gb|ADX67493.1| RNA binding S1 domain protein [Weeksella virosa DSM 16922]
          Length = 604

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G+V  +  +G FV   G  DGL+HI+ LS
Sbjct: 209 VVVSHKALIEADIEEQKKEIVAQLEKGQVLEGEVKNITSYGVFVDLGGV-DGLIHITDLS 267

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   S+++++G  + V +LDFD D+ +I+L +K
Sbjct: 268 WSRINHPSEILEDGQKINVVILDFDEDKSRIQLGIK 303



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V  ++L  D D  
Sbjct: 324 KGKVVVLADYGAFIEVAPGVEGLIHVSEMSWSTHLRSAQDFVKVGDEVEAEILTLDRDER 383

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 384 KMSLGIK 390


>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
          Length = 246

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 109/245 (44%), Gaps = 12/245 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+ +R+DGR +  +R I  ++G+  +  GS+   +G+T+ +  V        Q    
Sbjct: 3   LLSDQGLRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVY----GPHQASSK 58

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            S  +       Y+    +TGE  +     R+        ++A+   +         + +
Sbjct: 59  KSNHEEAIVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDV 118

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +  A+V  ++LAL+DAG+ + + V      L  +G+  + L D+S  E++
Sbjct: 119 YIEVLQADGGNYCASVNAATLALIDAGICLKEYVCACTASLA-NGN--VPLMDVSHLEEN 175

Query: 486 LGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G     VA   S   I  M+M  +      + +   L+ A +G   + N + + + E  
Sbjct: 176 SGGPTLTVASLPSSGKIAFMEMSQR---FHLDHLPKVLETALKGCREVQNVIDRAVREHV 232

Query: 544 LQLGE 548
            QLG+
Sbjct: 233 TQLGQ 237


>gi|224477053|ref|YP_002634659.1| hypothetical protein Sca_1569 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421660|emb|CAL28474.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 716

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVH+SQLS   V    D+V  GD V V +L  D  + K+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHVSQLSKRFVKNPMDIVNVGDIVDVWVLSADAQKNKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|170085647|ref|XP_001874047.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651599|gb|EDR15839.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1163

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P + KIY G+V  + +FGAFV   G     +G+VH+S + T  R    SD++  G  V V
Sbjct: 201 PVIFKIYNGKVTGLKEFGAFVTLEGVMGRVEGMVHVSSIQTGARANSASDLLSRGQQVKV 260

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K++      +I LSMK VDQ +G+
Sbjct: 261 KVMSVAG-NRIGLSMKDVDQVSGR 283


>gi|326392709|ref|ZP_08214008.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325991250|gb|EGD49943.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 88

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      DGLVH S++S   +    DVV  GD V V++L  D +R +I
Sbjct: 24  GTVRNVTDFGCFVDIGVHTDGLVHFSEMSQNYIKHPLDVVSVGDIVKVRVLSVDIERNRI 83

Query: 684 KLSMK 688
            LSMK
Sbjct: 84  SLSMK 88


>gi|94733276|emb|CAK04297.1| novel protein similar to mouse and human exosome component 5
           (EXOSC5) [Danio rerio]
          Length = 222

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 28/174 (16%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE---DEQYVDSLSGTQRND 373
           R    +R+  ++  LL R  GSS F++GDT +I+    G  E    ++  D         
Sbjct: 9   RSCPVLREYGSEQSLLSRPDGSSTFVQGDT-SILAGVYGPAEVKVSKEIYDR-------- 59

Query: 374 FMMHYNFLPCATGEV---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                     AT EV    +MG PS RE    +  R      L  T     +L ++ ++ 
Sbjct: 60  ----------ATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVV 109

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
             DGS     +  + +ALMDAG+P+S+    +   + K+G    I++D +  ++
Sbjct: 110 HDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQ---IITDPTARQE 160


>gi|56418591|ref|YP_145909.1| hypothetical protein GK0056 [Geobacillus kaustophilus HTA426]
 gi|297528431|ref|YP_003669706.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
 gi|56378433|dbj|BAD74341.1| polyribonucleotide nucleotidyltransferase [Geobacillus kaustophilus
           HTA426]
 gi|297251683|gb|ADI25129.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
          Length = 132

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V+VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDMVYVKVINV 63

Query: 678 DDRGKIKLSMK 688
              GKI LS++
Sbjct: 64  GQDGKIGLSIR 74


>gi|285018413|ref|YP_003376124.1| transcription-related protein [Xanthomonas albilineans GPE PC73]
 gi|283473631|emb|CBA16134.1| putative transcription-related protein [Xanthomonas albilineans]
          Length = 786

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +AAR  + +  I D+ +   + +G V  V  FGAFV     +DGLVHIS LS   V  
Sbjct: 636 EFKAARFADGVEDIKDL-KPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDSYVKD 694

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             +VVK GD V VK+L+ D  R +I L+ ++ D
Sbjct: 695 PREVVKAGDIVKVKVLEVDVARKRIALTRRLDD 727


>gi|240949276|ref|ZP_04753620.1| 30S ribosomal protein S1 [Actinobacillus minor NM305]
 gi|240296392|gb|EER47036.1| 30S ribosomal protein S1 [Actinobacillus minor NM305]
          Length = 554

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD D+ +
Sbjct: 195 KGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVTVGQEVTVKVLKFDKDKTR 253

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 254 VSLGLKQLGQD 264


>gi|291326411|ref|ZP_06124376.2| ribosomal protein S1 [Providencia rettgeri DSM 1131]
 gi|291314430|gb|EFE54883.1| ribosomal protein S1 [Providencia rettgeri DSM 1131]
          Length = 569

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 208 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 266

Query: 683 IKLSMK 688
           + L +K
Sbjct: 267 VSLGLK 272


>gi|170017311|ref|YP_001728230.1| transcriptional accessory protein [Leuconostoc citreum KM20]
 gi|169804168|gb|ACA82786.1| Transcriptional accessory protein [Leuconostoc citreum KM20]
          Length = 733

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V+DFGAFV      DGLVHIS+L   RV   S++V  GD V V +++ D  R +
Sbjct: 662 QGTVRNVVDFGAFVDLGVKHDGLVHISRLVKRRVKHPSEIVSVGDIVNVWVVEVDQKRQR 721

Query: 683 IKLSM 687
           I L+M
Sbjct: 722 IGLTM 726


>gi|161485730|ref|NP_661192.2| 30S ribosomal protein S1 [Chlorobium tepidum TLS]
          Length = 583

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+G  + VK+L FD +
Sbjct: 390 LHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKGQELEVKVLKFDVN 449

Query: 680 RGKIKLSMKVVDQN 693
             +I L  K ++ +
Sbjct: 450 ARRIALGHKQINND 463



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S T+ +   S  V     V V +L+ D +  K
Sbjct: 306 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQEVEVVILNIDKEHTK 365

Query: 683 IKLSMKVVDQN 693
           + LSMK V ++
Sbjct: 366 LSLSMKRVSED 376



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AA+  EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 198 LEEEYAAKREEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRI 252

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
              S+VV+    + V ++ FD+  K + L MK
Sbjct: 253 NHPSEVVELDQPIKVVVVGFDENTKRVSLGMK 284


>gi|118444683|ref|YP_877126.1| hypothetical protein NT01CX_1030 [Clostridium novyi NT]
 gi|118135139|gb|ABK62183.1| ribosomal protein S1 domain family protein [Clostridium novyi NT]
          Length = 135

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  DD G
Sbjct: 8   ILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISVDDNG 66

Query: 682 KIKLSMK 688
           ++ LS+K
Sbjct: 67  RLSLSIK 73


>gi|284050947|ref|ZP_06381157.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
           str. Paraca]
          Length = 718

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I+ ++D+    ++ +G V  V++FGAFV     +DGLVHISQL+   V     +V+ 
Sbjct: 634 RDDIKEVSDLKPGMEL-EGIVTNVVNFGAFVDVGVHQDGLVHISQLADRFVEDPQKIVRV 692

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKV 689
           G  V VK+L+ +++  +I LSM++
Sbjct: 693 GQVVKVKVLEVNEKLNRISLSMRI 716


>gi|257464687|ref|ZP_05629058.1| 30S ribosomal protein S1 [Actinobacillus minor 202]
 gi|257450347|gb|EEV24390.1| 30S ribosomal protein S1 [Actinobacillus minor 202]
          Length = 554

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD D+ +
Sbjct: 195 KGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVTVGQEVTVKVLKFDKDKTR 253

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 254 VSLGLKQLGQD 264


>gi|294102497|ref|YP_003554355.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293617477|gb|ADE57631.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 139

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 42/67 (62%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +V ++M +GAFV     +  ++HIS+LS   V K  DV++ G  V  K++  D++ +I L
Sbjct: 21  EVEQIMPYGAFVRLSTGQRAMIHISELSYSYVKKVEDVLEVGKKVTAKVIKIDEKNRIDL 80

Query: 686 SMKVVDQ 692
           S+K +++
Sbjct: 81  SLKKMEE 87


>gi|138893735|ref|YP_001124188.1| hypothetical protein GTNG_0056 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250777|ref|ZP_03149464.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|134265248|gb|ABO65443.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209727|gb|EDY04499.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 132

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V+VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDMVYVKVINV 63

Query: 678 DDRGKIKLSMK 688
              GKI LS++
Sbjct: 64  GQDGKIGLSIR 74


>gi|30692346|ref|NP_850903.1| RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent
           of ribosome [Arabidopsis thaliana]
 gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana]
 gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana]
 gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]
 gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana]
 gi|332006494|gb|AED93877.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
          Length = 416

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 263 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 321

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 322 RDRGRVSLSTKKLEPTPG 339


>gi|71906915|ref|YP_284502.1| 30S ribosomal protein S1 [Dechloromonas aromatica RCB]
 gi|71846536|gb|AAZ46032.1| SSU ribosomal protein S1P [Dechloromonas aromatica RCB]
          Length = 559

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++ +
Sbjct: 195 KGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLNVGDEVTAKILKFDAEKNR 253

Query: 683 IKLSMK 688
           + L MK
Sbjct: 254 VSLGMK 259



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G+FV      +GLVH+S++  T +    S VV+ GD V V +L+ D +R +
Sbjct: 281 GKVTNLTDYGSFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEERRR 340

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 341 ISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG F+   G  DGLVH+S LS     + +    K+GD V   +L  D ++ 
Sbjct: 367 KGAIKSITDFGIFIGLPGGIDGLVHLSDLSWSATGEEAIRNFKKGDEVEAVVLGIDVEKE 426

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 427 RISLGIK 433


>gi|118588274|ref|ZP_01545683.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
 gi|118438980|gb|EAV45612.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
          Length = 846

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I+D+    K+ +G V  V +FGAFV     +DGLVH+SQL+   V     VVK GD 
Sbjct: 688 VEEISDLKPGMKL-EGTVTNVTNFGAFVDVGVHQDGLVHVSQLADRFVDDPHKVVKAGDI 746

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V +L+ D  R +I ++MK
Sbjct: 747 VKVTILEVDVPRKRISMTMK 766


>gi|257875805|ref|ZP_05655458.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
 gi|257809971|gb|EEV38791.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
          Length = 210

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +  Q  + +   GS +   GDT  I   T+    +E+    L  T +
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATI----EERVPPFLRDTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        L D  +   PI + +A I++G++ DG     +
Sbjct: 117 DVVQADGGTRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSSAAVDMNLVMTESG 196


>gi|261344290|ref|ZP_05971934.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
 gi|282567894|gb|EFB73429.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
          Length = 557

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|170730495|ref|YP_001775928.1| transcription-related protein [Xylella fastidiosa M12]
 gi|167965288|gb|ACA12298.1| transcription-related protein [Xylella fastidiosa M12]
          Length = 772

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +A R  E + +I D+ +   I +G V  V  FGAFV     +DGL+HIS L+   V  
Sbjct: 636 EFKAVRFTEGVENIKDL-KPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKD 694

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             D+VK GD V VK+L+ D  R +I L+ ++ ++ 
Sbjct: 695 PRDIVKAGDIVKVKVLEIDLPRKRIALTCRLHEET 729


>gi|167563697|ref|ZP_02356613.1| ribonuclease PH [Burkholderia oklahomensis EO147]
          Length = 243

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR +  +RD+       +   GS L   GDT+ I   ++  R  E   D  
Sbjct: 1   MTNSSPRPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVATGKIPRSPITDYVAAISVGVFGGAP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
               + D+  DED     D  V  T SG
Sbjct: 177 ----VLDLDYDEDSACDTDMNVVMTGSG 200


>gi|167570847|ref|ZP_02363721.1| ribonuclease PH [Burkholderia oklahomensis C6786]
          Length = 243

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR +  +RD+       +   GS L   GDT+ I   ++  R  E   D  
Sbjct: 1   MTNSSPRPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVSTGKIPRSPITDYVAAISVGVFGGAP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
               + D+  DED     D  V  T SG
Sbjct: 177 ----VLDLDYDEDSACDTDMNVVMTGSG 200


>gi|28199110|ref|NP_779424.1| transcription-related protein [Xylella fastidiosa Temecula1]
 gi|182681838|ref|YP_001829998.1| RNA-binding S1 domain-containing protein [Xylella fastidiosa M23]
 gi|28057208|gb|AAO29073.1| transcription-related protein [Xylella fastidiosa Temecula1]
 gi|182631948|gb|ACB92724.1| RNA binding S1 domain protein [Xylella fastidiosa M23]
 gi|307578087|gb|ADN62056.1| RNA-binding S1 domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 772

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 602 EIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           E +A R  E + +I D+ +   I +G V  V  FGAFV     +DGL+HIS L+   V  
Sbjct: 636 EFKAVRFTEGVENIKDL-KPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKD 694

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             D+VK GD V VK+L+ D  R +I L+ ++ ++ 
Sbjct: 695 PRDIVKAGDIVKVKVLEIDVPRKRIALTCRLHEET 729


>gi|254369050|ref|ZP_04985063.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
 gi|157121971|gb|EDO66141.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
          Length = 235

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     +   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +  Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 59  --LIAEYGMLPRSTHMRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA       G+      P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
           laibachii Nc14]
          Length = 261

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 26/230 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD--SLSGT 369
           +R+DGR     R + A++G+  R  GS+   +G+T+ +VVV  G RE    VD  +L   
Sbjct: 18  LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVV-YGPRE----VDGTTLKNA 72

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR------AIHPVLPQ---TAQFP 420
           +    ++    + C   + S   A S R++      R+      AI  +      T  +P
Sbjct: 73  KGAASLVKKAIVHCECTQAS--FATSDRKVSRNASDRKNVEMSSAIKQIFESCIFTNLYP 130

Query: 421 YT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + + I  ++ ++DG    A++  +SLALMDAG+ ++  V     G V+       L D+
Sbjct: 131 QSQISIYPQVLQADGGELAASINATSLALMDAGIALNDFVVASTAGFVQQKS----LCDL 186

Query: 480 SGDEDHLGHMDFKVA--GTDSGITAMQMDMKIG-GISENIMVMALQQAKR 526
           +  E         VA       +  ++M+ K+   + E++M MA+    R
Sbjct: 187 NAFEQAARGPQITVAINPRSRHVNYLKMEAKLALEVFESVMGMAINGCDR 236


>gi|254785518|ref|YP_003072947.1| 30S ribosomal protein S1 [Teredinibacter turnerae T7901]
 gi|237685745|gb|ACR13009.1| ribosomal protein S1 [Teredinibacter turnerae T7901]
          Length = 560

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVAVGDEIEVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+ K  +  + D+G F       +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGAKV-KATITNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   +N
Sbjct: 334 DIDEERRRISLGIKQCQEN 352



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNEAGEEAVRKYKKGDELETVVLAIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K +D++
Sbjct: 429 ISLGIKQLDED 439


>gi|163848394|ref|YP_001636438.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526319|ref|YP_002570790.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669683|gb|ABY36049.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450198|gb|ACM54464.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 391

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ +FGAF+   GA DGL HIS+LS +RV    +V++ G  V V +++ D +R +I
Sbjct: 219 GRVNQLTNFGAFIDLGGA-DGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERI 277

Query: 684 KLSMKVVDQNTGKPI 698
            LS++ +  N  + I
Sbjct: 278 GLSIRQLQNNPWETI 292



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G V  V  FGAFV    A +GL+H S+L  +  A+  D+++ G  V  +++  D
Sbjct: 298 LGQLVTGPVTNVTPFGAFVQVEEAVEGLIHASELDADPQAQPRDILQPGQIVTARVISLD 357

Query: 679 -DRGKIKLSMKVVDQNTGKP 697
             R ++ LS++ + +N  +P
Sbjct: 358 RQRQRMGLSLRRIGENENEP 377


>gi|261417556|ref|YP_003251238.1| hypothetical protein GYMC61_0056 [Geobacillus sp. Y412MC61]
 gi|319765213|ref|YP_004130714.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
 gi|261374013|gb|ACX76756.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61]
 gi|317110079|gb|ADU92571.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
          Length = 132

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V+VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDMVYVKVINV 63

Query: 678 DDRGKIKLSMK 688
              GKI LS++
Sbjct: 64  GQDGKIGLSIR 74


>gi|113478043|ref|YP_724104.1| 30S ribosomal protein S1 [Trichodesmium erythraeum IMS101]
 gi|110169091|gb|ABG53631.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
          Length = 390

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +   S V+K  D + V ++D 
Sbjct: 195 EVGEVVIGAVRGIKPYGAFIDIGGV-SGLLHISEISHDHIETPSSVLKVNDELKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D DRG+I LS K ++   G
Sbjct: 254 DADRGRISLSTKQLEPEPG 272


>gi|297813179|ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320310|gb|EFH50732.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 416

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 263 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 321

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 322 RDRGRVSLSTKKLEPTPG 339


>gi|253699629|ref|YP_003020818.1| 30S ribosomal protein S1 [Geobacter sp. M21]
 gi|251774479|gb|ACT17060.1| ribosomal protein S1 [Geobacter sp. M21]
          Length = 584

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++   L E E  +    ++  + E   I  G V  + ++GAFV   G  DGL+H++
Sbjct: 189 GNLVLSRRVLLEEEREKARTETLATLKE-GDIVNGVVKNIAEYGAFVDLGGV-DGLLHVT 246

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S  R+   S++VK GDT+ V +L +D ++GKI L +K
Sbjct: 247 DMSWGRLGHPSEMVKVGDTLNVMVLKYDREKGKISLGLK 285



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG+V  V DFG FV      +GL+H+S++S E+VA   D    GD +   +L+ D    K
Sbjct: 480 KGRVTSVTDFGIFVEIEEGIEGLIHVSEISYEKVASPKDFANVGDELEAVVLNVDMVEKK 539

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 540 IALSIKAL 547



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAF+      +GLVH+S++S T RV   S+++K G+ V   +L  D    +
Sbjct: 307 GKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEILKVGEEVEAVILGVDPGNRR 366

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 367 ISLGLKQTEIN 377



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +GQ+  + DFG F+      DGLVH+S +S T RV    ++  +G TV   +L+ D
Sbjct: 393 EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTRRVKHPGEMFTKGQTVQAVVLNID 448


>gi|15964833|ref|NP_385186.1| hypothetical protein SMc02644 [Sinorhizobium meliloti 1021]
 gi|307300903|ref|ZP_07580672.1| Tex-like protein [Sinorhizobium meliloti BL225C]
 gi|307320720|ref|ZP_07600132.1| Tex-like protein [Sinorhizobium meliloti AK83]
 gi|15074012|emb|CAC45659.1| Putative transcriptional accessory protein [Sinorhizobium meliloti
           1021]
 gi|306893647|gb|EFN24421.1| Tex-like protein [Sinorhizobium meliloti AK83]
 gi|306903858|gb|EFN34444.1| Tex-like protein [Sinorhizobium meliloti BL225C]
          Length = 768

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +
Sbjct: 654 EGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVQVRVTEVDVARKR 713

Query: 683 IKLSMK 688
           I LSM+
Sbjct: 714 IGLSMR 719


>gi|320085220|emb|CBY95006.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 557

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|56460463|ref|YP_155744.1| 30S ribosomal protein S1 [Idiomarina loihiensis L2TR]
 gi|56179473|gb|AAV82195.1| Ribosomal protein S1 [Idiomarina loihiensis L2TR]
          Length = 560

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV  I K     + D+GAFV   G  DGL+HI+ ++ +RV   S++V  G
Sbjct: 184 ELLENLQEGQEVQGIVK----NLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEITVKVLKFDRERTRVSLGLK 260



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +++  G+V  + D+G FV      +GLVH+S++  T +    S VV   DTV V +L
Sbjct: 275 PEGHRLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVNLDDTVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 334 EIDEERRRISLGLKQCKPN 352


>gi|255654959|ref|ZP_05400368.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-23m63]
 gi|296449706|ref|ZP_06891476.1| possible ribosomal protein S1 [Clostridium difficile NAP08]
 gi|296877977|ref|ZP_06901996.1| possible ribosomal protein S1 [Clostridium difficile NAP07]
 gi|296261430|gb|EFH08255.1| possible ribosomal protein S1 [Clostridium difficile NAP08]
 gi|296431045|gb|EFH16873.1| possible ribosomal protein S1 [Clostridium difficile NAP07]
          Length = 424

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A ++AA+E    + +  EV +   G+V K+M +GAFV   G  +GL HI+ L+  RV   
Sbjct: 218 ARVKAAKE---ELFNSLEVGQKRDGKVTKIMPYGAFVDIGGI-EGLAHINNLAWTRVESV 273

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            DVV EG  V V +LD + +  KI L++K ++ +
Sbjct: 274 EDVVSEGQEVEVYVLDVNKETKKIALALKDINND 307



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +++ +   +V+++++ GAFV      D  + IS+LS  RVAK ++VV  GD V VK+LDF
Sbjct: 317 QIDDVVNAKVLRIIEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIGDEVKVKILDF 376

Query: 678 DDRGK 682
             + K
Sbjct: 377 KPKTK 381


>gi|149182576|ref|ZP_01861047.1| hypothetical protein BSG1_13331 [Bacillus sp. SG-1]
 gi|148849712|gb|EDL63891.1| hypothetical protein BSG1_13331 [Bacillus sp. SG-1]
          Length = 147

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    KG+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK++  
Sbjct: 4   EIGSKVKGKVTGITNFGAFVELPEGSTGLVHISEVADSYVKDVNDHLKVGDEVEVKVIS- 62

Query: 678 DDRGKIKLSM-KVVDQNTG 695
           ++ GKI LS+ K VD+  G
Sbjct: 63  ENAGKIALSIKKAVDKPEG 81


>gi|46579880|ref|YP_010688.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602654|ref|YP_967054.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|46449296|gb|AAS95947.1| ribosomal protein S1, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562883|gb|ABM28627.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311234119|gb|ADP86973.1| RNA binding S1 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 487

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 8/81 (9%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-- 679
           + +G V ++  FGAFV      DG+VHIS+L+  RVA+  + V  GD V VK+L   +  
Sbjct: 204 VLEGTVTRLAPFGAFVEIAPGVDGMVHISELTWSRVAQADEAVSVGDRVRVKVLGIGEAP 263

Query: 680 RGK---IKLSMKVVDQNTGKP 697
           +GK   I LS+K   Q  G P
Sbjct: 264 KGKGTRISLSVK---QAGGDP 281



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL+  +A  +   ++ D  E +++   +VV++  FGAFV      +GLVH+S++S T RV
Sbjct: 271 SLSVKQAGGDPWETVGDRLEQDQVVPAKVVRLAPFGAFVEVLPGVEGLVHVSEMSWTRRV 330

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            K  ++V  GD V VK+ + D  + +I LS++
Sbjct: 331 NKPEEIVAVGDAVNVKIKELDVAKRRISLSLR 362


>gi|150014988|ref|YP_001307242.1| hypothetical protein Cbei_0096 [Clostridium beijerinckii NCIMB
           8052]
 gi|149901453|gb|ABR32286.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 136

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V+ + +FGAF+   G + GLVHIS+++   V    + + E D V VK++  DD G
Sbjct: 8   IVEGTVINITNFGAFIEVEG-KTGLVHISEVADSYVKDIREHLSEQDKVKVKVISIDDNG 66

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 67  KISLSIK 73


>gi|327438077|dbj|BAK14442.1| predicted RNA binding protein [Solibacillus silvestris StLB046]
          Length = 142

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|324324254|gb|ADY19514.1| S1 RNA-binding domain-containing protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|228931747|ref|ZP_04094648.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228827927|gb|EEM73660.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|158520180|ref|YP_001528050.1| RNA-binding S1 domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158509006|gb|ABW65973.1| RNA binding S1 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 759

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I +I DV    K+  G V  +  FGAFV     +DGLVHISQ++   V   +D+VK  
Sbjct: 624 EGINTIDDVQPGMKL-PGIVTNITAFGAFVDIGVHQDGLVHISQMADRFVKSPADIVKVQ 682

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V V +L+ D +R +I LSMK
Sbjct: 683 QRVMVTVLEVDKERKRISLSMK 704


>gi|319654934|ref|ZP_08009008.1| hypothetical protein HMPREF1013_05630 [Bacillus sp. 2_A_57_CT2]
 gi|317393359|gb|EFV74123.1| hypothetical protein HMPREF1013_05630 [Bacillus sp. 2_A_57_CT2]
          Length = 151

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV       GLVHIS+++ + V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKLKGKVTGITKFGAFVELPEGSTGLVHISEVADKYVKDINEHLKVGDMVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
 gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
          Length = 549

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G + K+  FGAFV      DGLVHISQ+S ERV K  DVV  G  V  +++  D
Sbjct: 441 IGDVVSGTISKITSFGAFVELQDHIDGLVHISQISEERVEKIKDVVDIGTEVTARVIKID 500

Query: 679 -DRGKIKLSMKVVD 691
            +  ++ LS+K  +
Sbjct: 501 REERRLGLSIKAAN 514



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P   I   PP  +   IG          +    K+N++    V      + E  A++ 
Sbjct: 121 FLPASHIDIQPPKNLDQYIGQ-------TYDYKVLKINLERKNIVLSRRELIEEQRASKR 173

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             R + +      + KG V  + DFGAF+   G  DGL+HI+ +S  R++  S+++K+G+
Sbjct: 174 --RDLLERVNPGDVVKGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRISHPSEMLKQGE 230

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            + V +++ + ++ ++ L +K    N  + I
Sbjct: 231 EIDVMIIEINREKERVSLGLKQTKSNPWQDI 261



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 38/161 (23%)

Query: 571 GKVIRGIVEQT---GAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITDVP----EVNKI 622
           G V++G+V+     GA +++D  DG + I   S   I    EM++   ++     E+N+ 
Sbjct: 183 GDVVKGVVKNITDFGAFIDLDGMDGLLHITDMSWGRISHPSEMLKQGEEIDVMIIEINRE 242

Query: 623 YK----------------------------GQVVKVMDFGAFVHFCGARDGLVHISQLS- 653
            +                            G+VV ++ +GAF+      +GLVH++++S 
Sbjct: 243 KERVSLGLKQTKSNPWQDIEAKYPVGAKVAGKVVNLVPYGAFIEIEEGVEGLVHVTEMSW 302

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           T+R+ K S+++K GD V   +L    D  KI L ++ +D N
Sbjct: 303 TKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIRQLDPN 343



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  +  +GAFV      DG+VH+S +S T ++   S+V+K+ D +   +LD D +  +
Sbjct: 360 GKVRNITTYGAFVELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQR 419

Query: 683 IKLSMK 688
           I L MK
Sbjct: 420 ISLGMK 425


>gi|90416549|ref|ZP_01224480.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2207]
 gi|90331748|gb|EAS46976.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2207]
          Length = 557

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG +  + D+GAFV   G  DGL+HI+ +S +R+   S+++  GD + VK+L FD +R +
Sbjct: 196 KGVIKNLTDYGAFVDLGGI-DGLLHITDMSWKRIKHPSEMINVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L MK
Sbjct: 255 VSLGMK 260



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           K ++  + D+G F       +GLVH+S++  T +    S +V  GD V V +LD D +R 
Sbjct: 281 KAKITNLTDYGCFAELEDGVEGLVHVSEMDWTNKNVHPSKIVNLGDEVEVMVLDIDEERR 340

Query: 682 KIKLSMKVVDQN 693
           +I L +K    N
Sbjct: 341 RISLGIKQCHTN 352


>gi|161511183|ref|NP_777906.2| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38503269|sp|Q89AJ3|RS1_BUCBP RecName: Full=30S ribosomal protein S1
          Length = 566

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD V +K+L F DR 
Sbjct: 194 IVSGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKF-DRE 251

Query: 682 KIKLSM 687
           KI++S+
Sbjct: 252 KIRVSL 257



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G+V  + D+G FV      +GLVH+S++  T +    S +V+    V V +L
Sbjct: 275 PEKTKIT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKNN 352



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G+ DGLVH+S +S     + S    K+G+ V   +L  D DR +
Sbjct: 369 GKIKSITDFGIFIGLEGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRER 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|288930029|ref|ZP_06423870.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328688|gb|EFC67278.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 726

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 608 EMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           E + +I D VP +  +  G V  +  FGAFV     +DGLVH+SQL+   VA  ++VVK 
Sbjct: 644 ERVHTIADLVPGM--LLPGIVTNITKFGAFVDVGVHQDGLVHVSQLANRYVADPAEVVKL 701

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVV 690
              V VK+++ D  R +I L+MK V
Sbjct: 702 HQHVQVKVVEVDTRRNRISLTMKGV 726


>gi|301051978|ref|YP_003790189.1| putative transcription accessory protein [Bacillus anthracis CI]
 gi|300374147|gb|ADK03051.1| probable transcription accessory protein, S1 RNA-binding domain
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|183603130|ref|ZP_02964306.1| protein tex [Streptococcus pneumoniae CDC1087-00]
 gi|183570991|gb|EDT91519.1| protein tex [Streptococcus pneumoniae CDC1087-00]
          Length = 709

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSMKVVDQN 693
             +R K+ LS+  +++ 
Sbjct: 693 -TEREKVNLSLLALNET 708


>gi|161503891|ref|YP_001571003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865238|gb|ABX21861.1| hypothetical protein SARI_01981 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 557

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|42779356|ref|NP_976603.1| S1 RNA-binding domain-containing protein [Bacillus cereus ATCC
           10987]
 gi|42735271|gb|AAS39211.1| S1 RNA binding domain protein [Bacillus cereus ATCC 10987]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|27904178|gb|AAO27011.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 576

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD V +K+L F DR 
Sbjct: 204 IVSGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKF-DRE 261

Query: 682 KIKLSM 687
           KI++S+
Sbjct: 262 KIRVSL 267



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G+V  + D+G FV      +GLVH+S++  T +    S +V+    V V +L
Sbjct: 285 PEKTKIT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMIL 343

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 344 DIDEERRRISLGLKQCKNN 362



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G+ DGLVH+S +S     + S    K+G+ V   +L  D DR +
Sbjct: 379 GKIKSITDFGIFIGLEGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRER 438

Query: 683 IKLSMK 688
           I L +K
Sbjct: 439 ISLGIK 444


>gi|16759851|ref|NP_455468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16764341|ref|NP_459956.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142376|ref|NP_805718.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56413969|ref|YP_151044.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62179505|ref|YP_215922.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161614783|ref|YP_001588748.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168263527|ref|ZP_02685500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466572|ref|ZP_02700434.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194444412|ref|YP_002040179.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451518|ref|YP_002044973.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194468516|ref|ZP_03074500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734164|ref|YP_002114032.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251361|ref|YP_002145899.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261950|ref|ZP_03162024.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362892|ref|YP_002142529.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243294|ref|YP_002214905.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390727|ref|ZP_03217338.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929888|ref|ZP_03220909.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205352188|ref|YP_002225989.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856372|ref|YP_002243023.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161607|ref|ZP_03347317.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424598|ref|ZP_03357381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213609752|ref|ZP_03369578.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213852007|ref|ZP_03381539.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224582790|ref|YP_002636588.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913246|ref|ZP_04657083.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825856|ref|ZP_06545024.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25294435|pir||AC0614 30S ribosomal protein S1 [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16419493|gb|AAL19915.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16502144|emb|CAD05381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138006|gb|AAO69567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128226|gb|AAV77732.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62127138|gb|AAX64841.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161364147|gb|ABX67915.1| hypothetical protein SPAB_02535 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403075|gb|ACF63297.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409822|gb|ACF70041.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194454880|gb|EDX43719.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709666|gb|ACF88887.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631046|gb|EDX49632.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197094369|emb|CAR59882.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197215064|gb|ACH52461.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197240205|gb|EDY22825.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937810|gb|ACH75143.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603172|gb|EDZ01718.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204320882|gb|EDZ06083.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205271969|emb|CAR36813.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205347781|gb|EDZ34412.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206708175|emb|CAR32468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467317|gb|ACN45147.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246197|emb|CBG24001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992719|gb|ACY87604.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157524|emb|CBW17014.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911967|dbj|BAJ35941.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223304|gb|EFX48373.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616411|gb|EFY13320.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619661|gb|EFY16536.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622643|gb|EFY19488.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629792|gb|EFY26567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632486|gb|EFY29232.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637019|gb|EFY33722.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641441|gb|EFY38079.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646093|gb|EFY42609.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649605|gb|EFY46036.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654093|gb|EFY50416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658625|gb|EFY54887.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663482|gb|EFY59684.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670218|gb|EFY66358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671454|gb|EFY67576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676810|gb|EFY72877.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682735|gb|EFY78754.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686414|gb|EFY82396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713974|gb|EFZ05545.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129246|gb|ADX16676.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195937|gb|EFZ81104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199775|gb|EFZ84864.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202768|gb|EFZ87804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209039|gb|EFZ93976.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211515|gb|EFZ96354.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218000|gb|EGA02715.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219927|gb|EGA04403.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226705|gb|EGA10901.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229802|gb|EGA13925.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233027|gb|EGA17123.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240762|gb|EGA24804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243078|gb|EGA27099.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249759|gb|EGA33661.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252768|gb|EGA36606.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254794|gb|EGA38595.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260005|gb|EGA43633.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267994|gb|EGA51473.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269841|gb|EGA53290.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622658|gb|EGE29003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627232|gb|EGE33575.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332987872|gb|AEF06855.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 557

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|320527747|ref|ZP_08028917.1| S1 RNA binding domain protein [Solobacterium moorei F0204]
 gi|320131912|gb|EFW24472.1| S1 RNA binding domain protein [Solobacterium moorei F0204]
          Length = 758

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAFV      DGLVH+S +S +R++  S+ V   D   VWV  +D + R +
Sbjct: 642 GTVRNVVDFGAFVDIGLHEDGLVHLSHMSMKRISHPSECVAVNDIVKVWVYQID-EARNR 700

Query: 683 IKLSMKVVDQ 692
           ++LS+  +DQ
Sbjct: 701 VQLSLLPLDQ 710


>gi|225862297|ref|YP_002747675.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
 gi|225787563|gb|ACO27780.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|160915581|ref|ZP_02077792.1| hypothetical protein EUBDOL_01589 [Eubacterium dolichum DSM 3991]
 gi|158432701|gb|EDP10990.1| hypothetical protein EUBDOL_01589 [Eubacterium dolichum DSM 3991]
          Length = 114

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G +  +  +GAFV+     +GL+HIS++S   V      VK  + V VK+LD D
Sbjct: 2   VGEVVEGVITGIQPYGAFVYLDSKHNGLIHISEISERFVRDVHTYVKINERVKVKILDID 61

Query: 679 DRG-KIKLSMKVVDQNTGKPI 698
           + G   KLS+K V+ N  + +
Sbjct: 62  EDGIHFKLSLKAVEANKARSL 82


>gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 388

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++ +FGAF+   GA DGL HIS+LS +RV    +V+  G  V V +++ D +R
Sbjct: 215 ILTGRVNQLTNFGAFIDLGGA-DGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAER 273

Query: 681 GKIKLSMKVVDQN 693
            +I LS++ +  N
Sbjct: 274 ERIGLSLRRLQPN 286



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 600 LAEIEAAREMI----RSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + EI+A RE I    R +   P         + ++  G V  V  FGAFV    A +GL+
Sbjct: 266 VVEIDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLI 325

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           H S+L  +  A+  D+++ G  +  +++  D  R ++ LS++
Sbjct: 326 HASELDADPQAQPRDLLQPGQIITARIISLDKQRQRMGLSLR 367


>gi|331701848|ref|YP_004398807.1| Tex-like protein [Lactobacillus buchneri NRRL B-30929]
 gi|329129191|gb|AEB73744.1| Tex-like protein [Lactobacillus buchneri NRRL B-30929]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFG FV     +DGLVHIS++S   V   S V   GD  TVW+  +D  DR 
Sbjct: 653 QGTVRNVVDFGVFVDIGVKQDGLVHISKMSRTFVKDPSKVASVGDIVTVWIDSVDL-DRH 711

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 712 RIQLTM 717


>gi|294794649|ref|ZP_06759785.1| S1 RNA binding domain protein [Veillonella sp. 3_1_44]
 gi|294454979|gb|EFG23352.1| S1 RNA binding domain protein [Veillonella sp. 3_1_44]
          Length = 767

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  I KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  
Sbjct: 632 RKHVVSLEDI-KVGTIVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           GD +  +++  D  R +I LS+K +
Sbjct: 690 GDIIEAQIISVDVKRNRIGLSVKAL 714


>gi|153008797|ref|YP_001370012.1| RNA-binding S1 domain-containing protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560685|gb|ABS14183.1| RNA binding S1 domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 769

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 654 VLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDVPR 713

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 714 KRIGLTMR 721


>gi|331091238|ref|ZP_08340079.1| hypothetical protein HMPREF9477_00722 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404685|gb|EGG84224.1| hypothetical protein HMPREF9477_00722 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 363

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRGK 682
           G+V ++ DFGAFV      D L+H+SQ+S   V K +DV+  G  +  K++D +  D+ K
Sbjct: 282 GKVARMTDFGAFVELAPGVDALLHVSQISKVHVEKPADVLNVGQEITAKIVDLNVADK-K 340

Query: 683 IKLSMKVV 690
           I LSMK +
Sbjct: 341 ISLSMKAL 348



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  V DFGAF+   G  DGL+HIS++S  RV     V + G+T+ V + D 
Sbjct: 192 KVGDVVEGTVKNVTDFGAFIDLGGV-DGLLHISEMSWGRVENPKKVFQVGETIKVLVKDI 250

Query: 678 DDRGKIKLSMKVVDQN 693
           +D  K+ LS+K  + N
Sbjct: 251 NDT-KVALSLKFPETN 265


>gi|295397829|ref|ZP_06807893.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
 gi|294973926|gb|EFG49689.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
          Length = 189

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  +  FGAFV     ++GLVHIS+++   V   +DV+  GD V V + + 
Sbjct: 7   EVGNKVTGKVTGITKFGAFVDLGEGKNGLVHISEVAEGYVKDINDVLSVGDEVTVLVTNV 66

Query: 678 DDRGKIKLSMKVVDQNTG-KP 697
            D GKI LS++ ++ ++  KP
Sbjct: 67  ADDGKIALSIRRLNADSASKP 87


>gi|229089378|ref|ZP_04220653.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-42]
 gi|228693959|gb|EEL47647.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-42]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|229154014|ref|ZP_04282143.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 4342]
 gi|228629535|gb|EEK86233.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 4342]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|149007144|ref|ZP_01830808.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
 gi|147761182|gb|EDK68149.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
          Length = 709

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVSVWVKQID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|332075520|gb|EGI85988.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17545]
          Length = 709

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVSVWVKQID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|317124602|ref|YP_004098714.1| Tex-like protein [Intrasporangium calvum DSM 43043]
 gi|315588690|gb|ADU47987.1| Tex-like protein [Intrasporangium calvum DSM 43043]
          Length = 804

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAF+     +DGL H+S LS   V+   +VVK GD V  K+LD D  R +
Sbjct: 664 EGVVTNVAAFGAFIDVGVHQDGLAHVSALSHRFVSDPREVVKPGDVVTCKVLDVDLVRKR 723

Query: 683 IKLSMKVVDQ 692
           I LS+++ D+
Sbjct: 724 ISLSLRLDDE 733


>gi|254756962|ref|ZP_05208990.1| S1 RNA binding domain protein [Bacillus anthracis str. Australia
           94]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|225181427|ref|ZP_03734870.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167825|gb|EEG76633.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 133

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  +  FGAFV       GLVHIS+++   V   ++ +++ D V VK+L  D
Sbjct: 5   VGAIVEGVVTGITHFGAFVQLANGETGLVHISEVADSYVKDINEHLQKKDKVQVKVLSVD 64

Query: 679 DRGKIKLSMKVV 690
             GKI LS+K V
Sbjct: 65  GNGKIGLSIKQV 76


>gi|222094015|ref|YP_002528066.1| transcription accessory protein, s1 RNA-binding domain protein
           [Bacillus cereus Q1]
 gi|229137084|ref|ZP_04265708.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST26]
 gi|221238064|gb|ACM10774.1| probable transcription accessory protein, S1 RNA-binding domain
           protein [Bacillus cereus Q1]
 gi|228646391|gb|EEL02601.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST26]
          Length = 722

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46]
 gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46]
          Length = 253

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 29/205 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G      GS L   G+T+ +   ++     EQ V         
Sbjct: 10  RADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASV-----EQSVPRFKRDSGE 64

Query: 373 DFMM-HYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLRI 425
            ++   Y+ LP +T E  RM   S R    G      RL  R++   +        T+ I
Sbjct: 65  GWLTAEYSMLPASTHE--RMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINI 122

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G++    D  
Sbjct: 123 DCDVLQADGGTRTASITGAYVALADALTYLHAVGAVPGTPLKAPVAAVSVGII----DGR 178

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
           +  D+  +ED    +D  V  T  G
Sbjct: 179 VCLDLPYEEDSRAEVDLNVVMTAEG 203



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 29  GAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYAVG-KIPGGYLRRESR 83
           G+VL T+G T V+ T   ++S+    +D  + + LT  Y     +   ++P   +R + +
Sbjct: 34  GSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGW-LTAEYSMLPASTHERMPRESMRGKVK 92

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM-- 139
              +EI  SR+I RS+R      +  +N   +  +V+Q D        S+  A  AL   
Sbjct: 93  GRTHEI--SRLIGRSLRAAIDLKELGENTINIDCDVLQAD--GGTRTASITGAYVALADA 148

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
                    + G P + PV    V  I+G+  L+   +ED +  +DL V
Sbjct: 149 LTYLHAVGAVPGTPLKAPVAAVSVGIIDGRVCLDLPYEEDSRAEVDLNV 197


>gi|49183274|ref|YP_026526.1| S1 RNA-binding domain-containing protein [Bacillus anthracis str.
           Sterne]
 gi|49476750|ref|YP_034582.1| transcription accessory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476003|ref|YP_893154.1| transcription accessory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|170707864|ref|ZP_02898314.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|196041079|ref|ZP_03108375.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
 gi|49177201|gb|AAT52577.1| S1 RNA binding domain protein [Bacillus anthracis str. Sterne]
 gi|49328306|gb|AAT58952.1| probable transcription accessory protein, S1 RNA-binding domain
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118415228|gb|ABK83647.1| transcription accessory protein, S1 RNA-binding domain protein
           [Bacillus thuringiensis str. Al Hakam]
 gi|170127222|gb|EDS96099.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|196028014|gb|EDX66625.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
          Length = 724

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 656 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 715

Query: 683 IKLSM 687
           + LSM
Sbjct: 716 VALSM 720


>gi|52144985|ref|YP_081844.1| transcription accessory protein [Bacillus cereus E33L]
 gi|51978454|gb|AAU20004.1| probable transcription accessory protein, S1 RNA-binding domain
           [Bacillus cereus E33L]
          Length = 724

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 656 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 715

Query: 683 IKLSM 687
           + LSM
Sbjct: 716 VALSM 720


>gi|23098087|ref|NP_691553.1| hypothetical protein OB0632 [Oceanobacillus iheyensis HTE831]
 gi|22776312|dbj|BAC12588.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 724

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFG FV     +DGLVHIS++S + V    D+   GD  TVWV  +D   +G
Sbjct: 654 QGTVRNVVDFGVFVDIGVKQDGLVHISKMSKQFVKHPMDIASVGDVVTVWVDQVDV-QKG 712

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 713 RIALTM 718


>gi|226939798|ref|YP_002794871.1| 30S ribosomal protein S1 [Laribacter hongkongensis HLHK9]
 gi|226714724|gb|ACO73862.1| RpsA [Laribacter hongkongensis HLHK9]
          Length = 559

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++
Sbjct: 193 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLAVGDEVEAKVLKFDQEK 251

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 252 NRVSLGLK 259



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 274 PSGTRLF-GRVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVSLGDEVEVMIL 332

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 333 EIDEDRRRISLGMK 346



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS     + +    K+GD V   +L  D D+ 
Sbjct: 367 RGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSVAGEEAIRNFKKGDEVEAMVLSIDTDKE 426

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I + +K   Q  G P 
Sbjct: 427 RISMGIK---QLEGDPF 440


>gi|222056619|ref|YP_002538981.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
 gi|221565908|gb|ACM21880.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
          Length = 403

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVK 673
           + PE    ++GQV ++  FGAFV      DGL+HIS+L   +R+    +V+KEG+TV VK
Sbjct: 285 NYPE-GSFHRGQVARLAQFGAFVTLASGIDGLIHISKLGAGKRINHPREVLKEGETVEVK 343

Query: 674 LLDFDDRGKIKLSMKVVD 691
           +    DR   +LS+ + +
Sbjct: 344 VESV-DRENRRLSLSLAE 360


>gi|206977103|ref|ZP_03238003.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217957815|ref|YP_002336359.1| S1 RNA binding domain protein [Bacillus cereus AH187]
 gi|206744752|gb|EDZ56159.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217064993|gb|ACJ79243.1| S1 RNA binding domain protein [Bacillus cereus AH187]
          Length = 724

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 656 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 715

Query: 683 IKLSM 687
           + LSM
Sbjct: 716 VALSM 720


>gi|165871608|ref|ZP_02216254.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167634251|ref|ZP_02392573.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|167640274|ref|ZP_02398539.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|170687714|ref|ZP_02878929.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|177653364|ref|ZP_02935574.1| S1 RNA binding domain protein [Bacillus anthracis str. A0174]
 gi|190567361|ref|ZP_03020275.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036044|ref|ZP_03103445.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196046180|ref|ZP_03113407.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|218901448|ref|YP_002449282.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|227812923|ref|YP_002812932.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228925501|ref|ZP_04088594.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228944053|ref|ZP_04106436.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229119911|ref|ZP_04249169.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 95/8201]
 gi|229182642|ref|ZP_04309887.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BGSC 6E1]
 gi|254686597|ref|ZP_05150456.1| S1 RNA binding domain protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723563|ref|ZP_05185350.1| S1 RNA binding domain protein [Bacillus anthracis str. A1055]
 gi|254734925|ref|ZP_05192637.1| S1 RNA binding domain protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739710|ref|ZP_05197403.1| S1 RNA binding domain protein [Bacillus anthracis str. Kruger B]
 gi|254754919|ref|ZP_05206954.1| S1 RNA binding domain protein [Bacillus anthracis str. Vollum]
 gi|164712712|gb|EDR18243.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167511676|gb|EDR87057.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|167530565|gb|EDR93280.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|170668241|gb|EDT18989.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|172081404|gb|EDT66477.1| S1 RNA binding domain protein [Bacillus anthracis str. A0174]
 gi|190561488|gb|EDV15459.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991413|gb|EDX55380.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196022925|gb|EDX61605.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|218538623|gb|ACK91021.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|227002952|gb|ACP12695.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228600837|gb|EEK58412.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BGSC 6E1]
 gi|228663549|gb|EEL19131.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 95/8201]
 gi|228815627|gb|EEM61865.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228834163|gb|EEM79707.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 722

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|166228304|sp|A4VGR8|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166]
          Length = 240

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I   ++ T         L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIET----GVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +A++DA            G P+ + +A +++G+ + G+  + L
Sbjct: 119 VIQADGGTRTASITGAMVAVIDALKVLKKRGGLKGGDPVKQMIAAVSVGIYQ-GEPVLDL 177

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
             +   ED     D  V  TD+G
Sbjct: 178 DYL---EDSAAETDLNVVMTDAG 197


>gi|294498968|ref|YP_003562668.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|295704292|ref|YP_003597367.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294348905|gb|ADE69234.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
 gi|294801951|gb|ADF39017.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 145

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D +K G  + VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPGGQTGLVHISEVADSYVKDINDHLKVGQEIEVKVVNE 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS+K
Sbjct: 64  KD-GKIGLSIK 73


>gi|225445166|ref|XP_002280712.1| PREDICTED: similar to Os12g0541500 [Vitis vinifera]
          Length = 1135

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAF+ F    DGLVH+S+LS   V    ++V  G  V V+L++ + + G
Sbjct: 150 FTGKVKSIQPFGAFIDFGAFTDGLVHVSRLSDSYVKDVGNIVSIGQEVKVRLVEANTETG 209

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L+M+  D  T KP
Sbjct: 210 RISLTMRDSDDPT-KP 224


>gi|239825642|ref|YP_002948266.1| hypothetical protein GWCH70_0058 [Geobacillus sp. WCH70]
 gi|239805935|gb|ACS23000.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 132

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLRGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDIVNVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|113476121|ref|YP_722182.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
 gi|110167169|gb|ABG51709.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
          Length = 304

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G+VV V  FG FV   G   GL+HI+Q+S +RV   S +  +G+ V   ++D D
Sbjct: 200 VGQLLEGKVVGVKPFGVFVDLEGL-TGLLHITQVSQKRVDSLSTIFSQGNLVKAMIVDLD 258

Query: 679 D-RGKIKLSMKVVDQNTGK 696
           + R +I LS KV++   G+
Sbjct: 259 EGRKRISLSTKVLENYPGE 277


>gi|299536715|ref|ZP_07050025.1| hypothetical protein BFZC1_11862 [Lysinibacillus fusiformis ZC1]
 gi|298727829|gb|EFI68394.1| hypothetical protein BFZC1_11862 [Lysinibacillus fusiformis ZC1]
          Length = 142

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|269792910|ref|YP_003317814.1| RNA binding S1 domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100545|gb|ACZ19532.1| RNA binding S1 domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 140

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V  +  +GAFV     +  +VHIS+LS   V K  DV++    V  K++  D
Sbjct: 14  VGDVVTGTVEHIAPYGAFVRLENGQKAMVHISELSHSYVKKVEDVLELQQKVTAKVIKID 73

Query: 679 DRGKIKLSMKVVDQNTGKP 697
           +RG+I LS+K +     +P
Sbjct: 74  ERGRIDLSIKALKPRESRP 92


>gi|152979212|ref|YP_001344841.1| 30S ribosomal protein S1 [Actinobacillus succinogenes 130Z]
 gi|150840935|gb|ABR74906.1| ribosomal protein S1 [Actinobacillus succinogenes 130Z]
          Length = 550

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 197 KGIVKNLTEYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDKERTR 255

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 256 VSLGLKQLGQD 266



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VN+ D+ TVK+          SL   +  ++   +I +   V     G+V  + D+G FV
Sbjct: 236 VNVGDEITVKVLKFDKERTRVSLGLKQLGQDPWVAIAENYPVGSKLTGKVTNLTDYGCFV 295

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 +GLVH+S++  T +    S VV  GD+V V +L+ D +R +I L +K
Sbjct: 296 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLK 348


>gi|331092592|ref|ZP_08341411.1| hypothetical protein HMPREF9477_02054 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400603|gb|EGG80217.1| hypothetical protein HMPREF9477_02054 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 718

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 9/90 (10%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM + I  TDV E+  + +G V+K     V+DFG FV     +DGLVHISQ++ ++  K 
Sbjct: 626 EMPKPILRTDVLEMKDLTEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKH 685

Query: 661 S-DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             +VV  GD V VK++  D  + +I+L+MK
Sbjct: 686 PLEVVSVGDIVDVKVMSVDVKKKRIQLTMK 715


>gi|256822123|ref|YP_003146086.1| 30S ribosomal protein S1 [Kangiella koreensis DSM 16069]
 gi|256795662|gb|ACV26318.1| ribosomal protein S1 [Kangiella koreensis DSM 16069]
          Length = 555

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVQVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGIK 260



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +LD D +R 
Sbjct: 281 QGRVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEERR 340

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 341 RISLGIK 347



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRG 681
           G +  + DFG F+   G  DGLVH+S +S   VA    V   K+GD V   +L  D +R 
Sbjct: 369 GSIKSITDFGIFIGLDGGIDGLVHLSDISW-TVAGEEAVRDYKKGDEVEAVVLAVDAERE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K VD +
Sbjct: 428 RISLGIKQVDSD 439


>gi|47567492|ref|ZP_00238204.1| S1 RNA binding domain protein [Bacillus cereus G9241]
 gi|47555894|gb|EAL14233.1| S1 RNA binding domain protein [Bacillus cereus G9241]
          Length = 722

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|227821409|ref|YP_002825379.1| putative RNA-binding domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
 gi|227340408|gb|ACP24626.1| putative RNA-binding domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
          Length = 766

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +
Sbjct: 652 EGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRVTEVDVARKR 711

Query: 683 IKLSMK 688
           I LSM+
Sbjct: 712 IGLSMR 717


>gi|242280672|ref|YP_002992801.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123566|gb|ACS81262.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 716

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++ ++D+ E   I  G V  V  FGAFV     +DGLVHIS+++ + V   + VV  G  
Sbjct: 634 VKEVSDLRE-GMILNGIVTNVTAFGAFVDIGVHQDGLVHISRMADDFVRDPATVVHPGQA 692

Query: 670 VWVKLLDFD-DRGKIKLSMKVVD 691
           + VK+LD D  R +I LSM+  D
Sbjct: 693 LKVKVLDVDIQRKRISLSMRQSD 715


>gi|213579893|ref|ZP_03361719.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 443

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 82  KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 140

Query: 683 IKLSMK 688
           + L +K
Sbjct: 141 VSLGLK 146


>gi|153806802|ref|ZP_01959470.1| hypothetical protein BACCAC_01076 [Bacteroides caccae ATCC 43185]
 gi|149131479|gb|EDM22685.1| hypothetical protein BACCAC_01076 [Bacteroides caccae ATCC 43185]
          Length = 710

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +++V     
Sbjct: 627 VRTINDLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPTEIVSIHQQ 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V VK+++ D DR +I+LSM  V Q+
Sbjct: 686 VMVKIINVDTDRKRIQLSMIGVPQD 710


>gi|147677126|ref|YP_001211341.1| ribonuclease PH [Pelotomaculum thermopropionicum SI]
 gi|146273223|dbj|BAF58972.1| RNase PH [Pelotomaculum thermopropionicum SI]
          Length = 257

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +      ++   GS L   GDT+ I   T+    +++    L G  + 
Sbjct: 3   RIDGRKPDQLRPVRITRNYIKHAEGSVLIEIGDTRVICTATV----EDKVPLFLKGEGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +TG     E +R G    R     RL  R++  V+   A    T+ +  
Sbjct: 59  WITAEYGMLPRSTGVRTPREAAR-GKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA            +P+S  VA  ++G +    +  I 
Sbjct: 118 DVIQADGGTRTASITGAFVALVDALNRLKEQGQIDRIPVSDFVAATSVGRL----NGRIY 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +  T SG
Sbjct: 174 LDLCYEEDSAAEVDMNIVMTGSG 196


>gi|21646202|gb|AAM71534.1| ribosomal protein S1 [Chlorobium tepidum TLS]
          Length = 550

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+G  + VK+L FD +
Sbjct: 357 LHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKGQELEVKVLKFDVN 416

Query: 680 RGKIKLSMKVVDQN 693
             +I L  K ++ +
Sbjct: 417 ARRIALGHKQINND 430



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S T+ +   S  V     V V +L+ D +  K
Sbjct: 273 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQEVEVVILNIDKEHTK 332

Query: 683 IKLSMKVVDQN 693
           + LSMK V ++
Sbjct: 333 LSLSMKRVSED 343



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AA+  EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 165 LEEEYAAKREEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRI 219

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
              S+VV+    + V ++ FD+  K + L MK
Sbjct: 220 NHPSEVVELDQPIKVVVVGFDENTKRVSLGMK 251


>gi|82751666|ref|YP_417407.1| hypothetical protein SAB1948c [Staphylococcus aureus RF122]
 gi|82657197|emb|CAI81637.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 716

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-- 669
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S LS + V    D+V  GD   
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSTLSKKFVKNPMDIVSVGDIVD 694

Query: 670 VWVKLLDFDDRGKIKLSMKVVD 691
           VW+  +   D+ K K+S+ ++D
Sbjct: 695 VWIYSI---DKNKDKVSLTMID 713


>gi|28210997|ref|NP_781941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium tetani E88]
 gi|50401023|sp|Q895G2|ISPH_CLOTE RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase
 gi|28203436|gb|AAO35878.1| conserved protein [Clostridium tetani E88]
          Length = 635

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G VV+   FGAFV      DGL+HISQ+S +RV +  D +  G+ V  K+++ D
Sbjct: 560 VGNIVLGTVVRFASFGAFVELEPGVDGLIHISQISHKRVDRVEDELSIGEQVKAKIVEVD 619

Query: 679 -DRGKIKLSMKVVD 691
            ++ KI LS+K V+
Sbjct: 620 GEKRKIGLSIKEVN 633



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           E + I +G+V ++ DFGAFV+  G  DGL+H+S++S  RV K SD++K GD + V
Sbjct: 474 EKDTIKEGEVRRLTDFGAFVNINGV-DGLLHVSEISWGRVEKPSDMLKVGDKIKV 527


>gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329]
          Length = 238

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GD+  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDE--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|262282625|ref|ZP_06060393.1| S1 RNA binding domain-containing protein [Streptococcus sp.
           2_1_36FAA]
 gi|262261916|gb|EEY80614.1| S1 RNA binding domain-containing protein [Streptococcus sp.
           2_1_36FAA]
          Length = 710

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKISKNFVKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|332289145|ref|YP_004419997.1| ribonuclease PH [Gallibacterium anatis UMN179]
 gi|330432041|gb|AEC17100.1| ribonuclease PH [Gallibacterium anatis UMN179]
          Length = 239

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + RD+  +R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPNNRDNHAMRPIKITRHYTKHAEGSVLIEFGDTKVLCNATV----EETVPRFLKGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++  ++  T     T+ +  
Sbjct: 57  GWITAEYGMLPRATNVRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS++AL DA       G+    PI   VA +++G+V+       L
Sbjct: 117 DVIQADGGTRTAAISGSAVALHDAIQTLLDKGLIKQNPIKNLVAAVSVGIVEQQQ----L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  TD G
Sbjct: 173 CDLEYVEDSNAETDMNVVMTDDG 195


>gi|228983501|ref|ZP_04143711.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228776245|gb|EEM24601.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 722

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|229194632|ref|ZP_04321429.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1293]
 gi|228588853|gb|EEK46874.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1293]
          Length = 722

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 238

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++GL+  GD+  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL--GDE--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|93006978|ref|YP_581415.1| ribonuclease PH [Psychrobacter cryohalolentis K5]
 gi|122414849|sp|Q1Q8S2|RNPH_PSYCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|92394656|gb|ABE75931.1| RNAse PH [Psychrobacter cryohalolentis K5]
          Length = 238

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+   +R IS +    +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASV----ESGVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++  ++  +     T+ +  
Sbjct: 57  GWITAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKP-----------VAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A+V G+++AL+DA   I K            VA +++G+ KDG  ++  
Sbjct: 117 DVLQADGGTRTASVTGAAIALIDALESIQKTKKLKADPLIGLVAAVSVGM-KDGKAYL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED     D  V  T  G
Sbjct: 174 -DLNYEEDASCDTDLNVVMTQKG 195


>gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 240

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL+DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|281421926|ref|ZP_06252925.1| protein YhgF [Prevotella copri DSM 18205]
 gi|281403980|gb|EFB34660.1| protein YhgF [Prevotella copri DSM 18205]
          Length = 710

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I+ I D+ +V  +  G V  +  FGAFV      DGLVH+SQ+S   +   S+VVK  + 
Sbjct: 629 IKEIEDL-QVGMVVPGIVTNITKFGAFVDIGVHNDGLVHVSQMSNRYIQDPSEVVKLHEH 687

Query: 670 VWVKLLDFD-DRGKIKLSMKVV 690
           V V++ + D  R +I LSMK V
Sbjct: 688 VMVRVAEVDLKRKRIALSMKGV 709


>gi|119477610|ref|ZP_01617760.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
 gi|119449113|gb|EAW30353.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
          Length = 559

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ K  +  + D+G F       +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGARV-KATITNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   +N
Sbjct: 334 DIDEERRRISLGIKQCMEN 352



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G +  + DFG F+   GA DGLVH+S +S     +  D V   K+GD +   +L  D +R
Sbjct: 369 GGIKSITDFGIFIGLDGAIDGLVHLSDISWNETGE--DAVRKYKKGDEIETVILSVDPER 426

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 427 ERISLGIK 434


>gi|42522621|ref|NP_968001.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
 gi|39575153|emb|CAE78994.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
          Length = 595

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E  R+ +RS T D      +  G V  + D+GAF+   G  DGL+HI+ +S
Sbjct: 199 IVLSRRALLEEERDSLRSQTLDTMAEGSVVTGVVKNITDYGAFIDL-GGMDGLLHITDMS 257

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             RV   S+++  GD + VK+L +D ++ ++ L MK
Sbjct: 258 WGRVKHPSEMLNVGDEIQVKVLKYDKEKERVSLGMK 293



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K  DFGAFV      +GL+HIS+L+TE++    + +K G +V  +++  D D  KI 
Sbjct: 490 KVTKTADFGAFVELESDIEGLIHISELTTEKINSVEEFIKPGQSVKAEVISIDKDARKIG 549

Query: 685 LSMKVV 690
           LS K+V
Sbjct: 550 LSAKLV 555


>gi|67922621|ref|ZP_00516127.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
 gi|67855549|gb|EAM50802.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
          Length = 313

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 20/151 (13%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F PR  +M     +  ++ G+ G+++      T  +VN     T K+  S    I AAR 
Sbjct: 155 FIPRSHLM-----EKEDLNGLVGQLLTA----TFLEVN---QSTNKLVLSQRRAIAAAR- 201

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 D  EV ++  G+V ++  +G FV F G   GL+HI+Q+S  RV   + V K   
Sbjct: 202 -----IDKLEVGQLVSGKVARIQPYGIFVDFEGV-SGLLHITQVSGSRVDDLNHVFKYNQ 255

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            + V +L  D+ + +I LS K+++ + G+ I
Sbjct: 256 EIKVMILSIDEYKNRIALSTKILENHPGEII 286


>gi|225854413|ref|YP_002735925.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
 gi|225723646|gb|ACO19499.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
          Length = 709

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKQID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|239832549|ref|ZP_04680878.1| cytochrome c oxidase, subunit I [Ochrobactrum intermedium LMG 3301]
 gi|239824816|gb|EEQ96384.1| cytochrome c oxidase, subunit I [Ochrobactrum intermedium LMG 3301]
          Length = 786

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 671 LLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKAPHEVVKAGDVVKVRVTEVDVPR 730

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 731 KRIGLTMR 738


>gi|118443423|ref|YP_878169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium novyi NT]
 gi|118133879|gb|ABK60923.1| rpsA [Clostridium novyi NT]
          Length = 634

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G++V+  DFGAFV      DGLVH+S++S +R+ K SDV++    V  K+++ +   K +
Sbjct: 567 GKIVRFADFGAFVQLEPGIDGLVHVSEISYKRINKPSDVLELNQEVKAKIINVNKETKRL 626

Query: 684 KLSMK 688
            LS+K
Sbjct: 627 SLSIK 631



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G++ ++ +FGAFV   G  DGL+H+S++S  RV K  D++  G+ V V +L+ D + 
Sbjct: 479 VVEGEIKRLTNFGAFVDINGI-DGLLHVSEISWGRVEKPEDILSVGEKVKVCILNIDKEH 537

Query: 681 GKIKLSMK 688
            K+ LS+K
Sbjct: 538 KKLSLSIK 545


>gi|148653988|ref|YP_001281081.1| ribonuclease PH [Psychrobacter sp. PRwf-1]
 gi|172048586|sp|A5WHJ0|RNPH_PSYWF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148573072|gb|ABQ95131.1| RNAse PH [Psychrobacter sp. PRwf-1]
          Length = 238

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+ + +R ++ +    +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASV----EAGVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++  ++  T     T+ +  
Sbjct: 57  GWVTAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+DA             P+   VA +++G VK+G+   +L
Sbjct: 117 DVLQADGGTRTASITGAAIALIDALEVLQQKKKLKADPLIGLVAAVSVG-VKNGE---VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED     D  V  T  G
Sbjct: 173 LDLNYEEDSSCDTDLNVVMTQKG 195


>gi|77164807|ref|YP_343332.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
 gi|254434282|ref|ZP_05047790.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
 gi|76883121|gb|ABA57802.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
 gi|207090615|gb|EDZ67886.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
          Length = 765

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E I+++ D+ +   I +G    V  FGAFV     +DGLVHIS L+   V    ++V
Sbjct: 634 AFKEEIQTLEDL-KPGMILEGVATNVTAFGAFVDVGVHQDGLVHISALADRFVKDPHEIV 692

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKV 689
             GD V VK+L+ D+ R +I L+M++
Sbjct: 693 SAGDIVKVKVLEVDNVRQRIGLTMRL 718


>gi|255067151|ref|ZP_05319006.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
 gi|255048519|gb|EET43983.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
          Length = 561

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 195 IIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 335 EIDEDRRRISLGMKQCQAN 353



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D D+ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVDKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|256823536|ref|YP_003147499.1| RNA-binding S1 domain-containing protein [Kangiella koreensis DSM
           16069]
 gi|256797075|gb|ACV27731.1| RNA binding S1 domain protein [Kangiella koreensis DSM 16069]
          Length = 773

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAF+     +DGLVH+S ++ E +   ++VVK GD V V +LD D  R +
Sbjct: 657 EGVVTNVTAFGAFIDVGVHQDGLVHLSMMANEFIKDPAEVVKAGDIVKVWVLDVDMQRKR 716

Query: 683 IKLSMKVVD-QNTGKP 697
           I LSM   D Q   KP
Sbjct: 717 ISLSMIGPDAQAASKP 732


>gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
 gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
          Length = 443

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G + ++  FGAF       +GL+H+S+L+  RV   ++V++EGD V V+++  
Sbjct: 308 QVGQVVRGTITQLASFGAFARLQEGVEGLIHVSELAGWRVEHPNEVLQEGDDVIVRVIRI 367

Query: 678 DD-RGKIKLSMK 688
           D  R +I LS++
Sbjct: 368 DPARRRIGLSLR 379



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V  + DFG FV   GA DGLVH+S++S  RV   S+V++ GD V V +L  + ++ K
Sbjct: 229 RGRVTSIADFGVFVDIGGA-DGLVHLSEISWTRVKHPSEVLRVGDEVDVMVLSVNPEQRK 287

Query: 683 IKLSMK 688
           I LS++
Sbjct: 288 IALSIR 293


>gi|225858705|ref|YP_002740215.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
 gi|225720875|gb|ACO16729.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
          Length = 709

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|78485542|ref|YP_391467.1| 30S ribosomal protein S1 [Thiomicrospira crunogena XCL-2]
 gi|78363828|gb|ABB41793.1| SSU ribosomal protein S1P [Thiomicrospira crunogena XCL-2]
          Length = 557

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  + D+GAF+   G  DGL+HI+ ++  RV   S+V++ GD + VK+L F
Sbjct: 191 EEGSVLQGIVKNLTDYGAFIDLGGI-DGLLHITDMAWRRVNHPSEVIQVGDEIEVKVLKF 249

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D ++ ++ L MK + ++    +V
Sbjct: 250 DREKNRVSLGMKQLQEDPWSDMV 272



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAF+      +GLVH S+L  T R    S VV  G  V VK+LD D +R +
Sbjct: 283 GKVANITDYGAFIEIEDGIEGLVHTSELDWTNRNIHPSKVVHLGQEVKVKILDVDQERRR 342

Query: 683 IKLSMK 688
           I LS+K
Sbjct: 343 ISLSIK 348



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH++ +S  +  + +    K+GD +   +L  D +R +
Sbjct: 370 GSIKSITDFGIFIGLDGNIDGLVHLTDISWSQSGEEAVREFKKGDELETVILSIDPERER 429

Query: 683 IKLSMKVVDQN 693
           I L +K ++Q+
Sbjct: 430 ISLGLKQLEQD 440


>gi|71898476|ref|ZP_00680648.1| RNA binding S1 [Xylella fastidiosa Ann-1]
 gi|71731789|gb|EAO33848.1| RNA binding S1 [Xylella fastidiosa Ann-1]
          Length = 772

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGL+HIS L+   V    D+VK GD V VK+L+ D  R
Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEIDVPR 716

Query: 681 GKIKLSMKVVDQN 693
            +I L+ ++ ++ 
Sbjct: 717 KRIALTCRLHEET 729


>gi|325570405|ref|ZP_08146182.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325156615|gb|EGC68792.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 450

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R ++ Q  + +   GS +   GDT  I   T+    +++    L  T +
Sbjct: 1   MRHDGRKETMLRPVNIQTNVYKHPEGSVVISFGDTTVICSATI----EDRVPPFLRDTGK 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWITAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        L D  +   PI + +A I++G++ DG     +
Sbjct: 117 DVVQADGGTRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSSAAVDMNLVMTESG 196


>gi|289810200|ref|ZP_06540829.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 233

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 56  KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 114

Query: 683 IKLSMK 688
           + L +K
Sbjct: 115 VSLGLK 120


>gi|261365785|ref|ZP_05978668.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
 gi|288565693|gb|EFC87253.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
          Length = 561

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 195 IIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 335 EIDEDRRRISLGMKQCQAN 353



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D D+ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVDKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|213649373|ref|ZP_03379426.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 417

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 56  KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 114

Query: 683 IKLSMK 688
           + L +K
Sbjct: 115 VSLGLK 120


>gi|29840228|ref|NP_829334.1| 30S ribosomal protein S1 [Chlamydophila caviae GPIC]
 gi|29834576|gb|AAP05212.1| ribosomal protein S1 [Chlamydophila caviae GPIC]
          Length = 581

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G  +++S+   EIE   EM  + +++        G V K+  FGAFV      +GL+H+S
Sbjct: 460 GVKQLSSNPWNEIE---EMFPTGSNIS-------GVVTKITAFGAFVELQNGIEGLIHVS 509

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +LS +  +K  D++  GD+V  K++  D D  K+ LS+K
Sbjct: 510 ELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 370 ISLGLKQTEHN 380



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAE---IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+NID    V ++   L E   I    E+I  I     + +  +G V  + DFG F+   
Sbjct: 186 KINIDRRNVV-VSRRELLEAERISKKAELIEQIN----IGERRRGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K +  N    I
Sbjct: 457 ITLGVKQLSSNPWNEI 472


>gi|322386962|ref|ZP_08060586.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
 gi|321269244|gb|EFX52180.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
          Length = 120

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++D+D+  GK
Sbjct: 8   KGKITGIQPYGAFVELESGLIGLIHISEIRTGYIDNIHDILKIGDQVLVQVVDYDEFSGK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  ASLSMRTLEE 77


>gi|213418378|ref|ZP_03351444.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 515

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 172 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTR 230

Query: 683 IKLSMK 688
           + L +K
Sbjct: 231 VSLGLK 236


>gi|146320618|ref|YP_001200329.1| 30S ribosomal protein S1 [Streptococcus suis 98HAH33]
 gi|145691424|gb|ABP91929.1| SSU ribosomal protein S1P [Streptococcus suis 98HAH33]
          Length = 349

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G+V ++  FGAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D
Sbjct: 193 VGEVVTGKVARITSFGAFIDLGGV-DGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAID 251

Query: 679 D-RGKIKLSMK 688
           +  G++ LS+K
Sbjct: 252 EVEGRVSLSLK 262



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D +  G  V VK+L+    D
Sbjct: 281 VIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMK 688
           +R  + LS+K
Sbjct: 341 ER--VSLSIK 348


>gi|15604817|ref|NP_219601.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/UW-3/CX]
 gi|255506673|ref|ZP_05382312.1| 30S ribosomal protein S1 [Chlamydia trachomatis D(s)2923]
 gi|6831540|sp|O84100|RS1_CHLTR RecName: Full=30S ribosomal protein S1
 gi|3328495|gb|AAC67689.1| S1 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|289525142|emb|CBJ14614.1| SSU ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|296434686|gb|ADH16864.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|297748227|gb|ADI50773.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|297749107|gb|ADI51785.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-LC]
          Length = 569

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  GD V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSIK 548



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    D G
Sbjct: 309 RGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEG 368

Query: 682 KIKLSMKVVDQN 693
           KI L +K    N
Sbjct: 369 KISLGLKQTKHN 380



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 457 ITLGVKQLTPN 467


>gi|255029953|ref|ZP_05301904.1| ribonuclease PH [Listeria monocytogenes LO28]
          Length = 244

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 22/199 (11%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R    
Sbjct: 1   GRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGRGWIS 56

Query: 376 MHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  ++ +
Sbjct: 57  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 116

Query: 432 SDGSSSMATVCGSSLAL------MDAGVPISK-PV----AGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+      +D  VP +K PV    A  ++G++++G   +   D++
Sbjct: 117 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL---DLN 173

Query: 481 GDEDHLGHMDFKVAGTDSG 499
             ED    +D  +  T SG
Sbjct: 174 YVEDSAAQVDMNIIMTGSG 192


>gi|326384710|ref|ZP_08206387.1| transcriptional accessory protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196518|gb|EGD53715.1| transcriptional accessory protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 803

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G  V VK+L  D DR
Sbjct: 656 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYVSDPHEVVRSGQVVKVKVLAVDVDR 715

Query: 681 GKIKLSMKVVDQ 692
            +I LS+++ D+
Sbjct: 716 QRIGLSLRLNDE 727


>gi|292491394|ref|YP_003526833.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
 gi|291579989|gb|ADE14446.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
          Length = 762

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E ++++ D+     + +G V  V  FGAFV     +DGLVHIS L+   V    +VV  
Sbjct: 636 KEDVKTLEDL-RPGMMLEGVVTNVTAFGAFVDIGVHQDGLVHISALADRFVKDPHEVVSA 694

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V VK+L+ D  R +I L+M++ +    +P
Sbjct: 695 GDIVKVKVLEIDKARKRIGLTMRLKEAAGKQP 726


>gi|282899504|ref|ZP_06307469.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
 gi|281195611|gb|EFA70543.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
          Length = 718

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE I+ I D+  V    +G +  V +FGAFV     +DGLVHISQL+   V     +VK 
Sbjct: 634 REGIKEIRDLT-VGMELEGIITNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKTIVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMK 688
           G  V V++L+ +++ K I LSM+
Sbjct: 693 GQLVRVRVLEVNEKLKRISLSMR 715


>gi|229015646|ref|ZP_04172635.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1273]
 gi|228745646|gb|EEL95659.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1273]
          Length = 655

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 587 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 646

Query: 683 IKLSM 687
           + LSM
Sbjct: 647 VALSM 651


>gi|332201372|gb|EGJ15442.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
          Length = 709

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|166154319|ref|YP_001654437.1| 30S ribosomal protein S1 [Chlamydia trachomatis 434/Bu]
 gi|166155194|ref|YP_001653449.1| 30S ribosomal protein S1 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|255348460|ref|ZP_05380467.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70]
 gi|255503002|ref|ZP_05381392.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70s]
 gi|301335570|ref|ZP_07223814.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2tet1]
 gi|165930307|emb|CAP03793.1| SSU ribosomal protein S1P [Chlamydia trachomatis 434/Bu]
 gi|165931182|emb|CAP06747.1| SSU ribosomal protein S1P [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 569

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  GD V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSIK 548



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    D G
Sbjct: 309 RGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEG 368

Query: 682 KIKLSMKVVDQN 693
           KI L +K    N
Sbjct: 369 KISLGLKQTKHN 380



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 457 ITLGVKQLTPN 467


>gi|148992962|ref|ZP_01822581.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|168490278|ref|ZP_02714477.1| protein tex [Streptococcus pneumoniae SP195]
 gi|147928414|gb|EDK79430.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183571410|gb|EDT91938.1| protein tex [Streptococcus pneumoniae SP195]
 gi|332073238|gb|EGI83717.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17570]
          Length = 709

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|148984645|ref|ZP_01817913.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|149010452|ref|ZP_01831823.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168490996|ref|ZP_02715139.1| protein tex [Streptococcus pneumoniae CDC0288-04]
 gi|225861200|ref|YP_002742709.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229397|ref|ZP_06963078.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255859|ref|ZP_06979445.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503083|ref|YP_003725023.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147764933|gb|EDK71862.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923036|gb|EDK74151.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|183574580|gb|EDT95108.1| protein tex [Streptococcus pneumoniae CDC0288-04]
 gi|225727709|gb|ACO23560.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238678|gb|ADI69809.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799893|emb|CBW32471.1| putative transcription accessory protein [Streptococcus pneumoniae
           OXC141]
 gi|327389190|gb|EGE87535.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04375]
 gi|332202763|gb|EGJ16832.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41317]
          Length = 709

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|62263530|gb|AAX78169.1| unknown protein [synthetic construct]
          Length = 270

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 28/236 (11%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R  GR+++ +R++       +   GS L   GDT+ I   ++     +   DS  G  
Sbjct: 26  EMRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGW- 84

Query: 371 RNDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                  Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++
Sbjct: 85  ---LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKV 140

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A++ G+SLA+ DA               P+   VA I++G+  +   
Sbjct: 141 DCDVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP- 199

Query: 473 FIILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
              + D+  DED     D  V   ++ GI  +Q   +    SE      L  AK+G
Sbjct: 200 ---VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 252


>gi|84489719|ref|YP_447951.1| transcriptional accessory protein [Methanosphaera stadtmanae DSM
           3091]
 gi|84373038|gb|ABC57308.1| predicted transcriptional accessory protein [Methanosphaera
           stadtmanae DSM 3091]
          Length = 717

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I +G V  V+DFGAFV     +DGLVHIS+L  ++  +   D+V  GD V V++L  D +
Sbjct: 648 ILEGVVRNVVDFGAFVDIGVHQDGLVHISELIEDKFVRHPMDIVNVGDIVEVRVLSVDIE 707

Query: 680 RGKIKLSM 687
           R +I LSM
Sbjct: 708 RSRISLSM 715


>gi|332204911|gb|EGJ18976.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47901]
          Length = 709

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|296438403|gb|ADH20556.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
          Length = 569

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  GD V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSIK 548



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    D G
Sbjct: 309 RGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEG 368

Query: 682 KIKLSMKVVDQN 693
           KI L +K    N
Sbjct: 369 KISLGLKQTKHN 380



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 457 ITLGVKQLTPN 467


>gi|237804447|ref|YP_002888601.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272747|emb|CAX09651.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 569

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  GD V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSIK 548



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    D G
Sbjct: 309 RGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEG 368

Query: 682 KIKLSMKVVDQN 693
           KI L +K    N
Sbjct: 369 KISLGLKQTKHN 380



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 457 ITLGVKQLTPN 467


>gi|229028095|ref|ZP_04184244.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1271]
 gi|228733217|gb|EEL84050.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1271]
          Length = 656

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G+
Sbjct: 588 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDIVSVGQIVKVWVDDIDTKKGR 647

Query: 683 IKLSM 687
           + LSM
Sbjct: 648 VALSM 652


>gi|157151257|ref|YP_001450091.1| hypothetical protein SGO_0792 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076051|gb|ABV10734.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 710

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD  TVWV  LD  +R 
Sbjct: 639 EGVVRNVVDFGAFVDIGIHEDGLIHISKISKNFVKHPSQVLSVGDLVTVWVDKLDV-ERE 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|45358690|ref|NP_988247.1| RNA binding S1 domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047556|emb|CAF30683.1| RNA binding S1 [Methanococcus maripaludis S2]
          Length = 713

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  ++DFGAF+      DGL HIS+++   +    DV+  GD V V ++D D D+
Sbjct: 643 ILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDK 702

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 703 KRVSLSIK 710


>gi|15900789|ref|NP_345393.1| transcriptional regulator, putative [Streptococcus pneumoniae
           TIGR4]
 gi|111657235|ref|ZP_01408005.1| hypothetical protein SpneT_02001548 [Streptococcus pneumoniae
           TIGR4]
 gi|303254587|ref|ZP_07340690.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS455]
 gi|303259816|ref|ZP_07345791.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262231|ref|ZP_07348175.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264652|ref|ZP_07350570.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS397]
 gi|303267582|ref|ZP_07353426.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS457]
 gi|303269819|ref|ZP_07355566.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS458]
 gi|14972382|gb|AAK75033.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4]
 gi|301801754|emb|CBW34464.1| putative transcription accessory protein [Streptococcus pneumoniae
           INV200]
 gi|302598439|gb|EFL65482.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS455]
 gi|302636554|gb|EFL67045.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639021|gb|EFL69481.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302640646|gb|EFL71046.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS458]
 gi|302642880|gb|EFL73183.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS457]
 gi|302645739|gb|EFL75968.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS397]
          Length = 709

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|227520047|ref|ZP_03950096.1| RNA-binding protein [Enterococcus faecalis TX0104]
 gi|227072595|gb|EEI10558.1| RNA-binding protein [Enterococcus faecalis TX0104]
          Length = 159

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDQVTVKVTSV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKIGLSIR 74


>gi|210615499|ref|ZP_03290626.1| hypothetical protein CLONEX_02842 [Clostridium nexile DSM 1787]
 gi|210150348|gb|EEA81357.1| hypothetical protein CLONEX_02842 [Clostridium nexile DSM 1787]
          Length = 726

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I KG V  V+DFG FV     +DGLVHISQ++ ++  K   +VV  GD V VK++  D  
Sbjct: 656 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKHPLEVVSVGDIVDVKVMSVDVK 715

Query: 680 RGKIKLSMK 688
           + +I+L+MK
Sbjct: 716 KKRIQLTMK 724


>gi|76788812|ref|YP_327898.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/HAR-13]
 gi|255310900|ref|ZP_05353470.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276]
 gi|255317200|ref|ZP_05358446.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276s]
 gi|76167342|gb|AAX50350.1| SSU ribosomal protein S1P [Chlamydia trachomatis A/HAR-13]
 gi|296435615|gb|ADH17789.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|296436538|gb|ADH18708.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|296437475|gb|ADH19636.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|297139974|gb|ADH96732.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
          Length = 569

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  GD V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSIK 548



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    D G
Sbjct: 309 RGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEG 368

Query: 682 KIKLSMKVVDQN 693
           KI L +K    N
Sbjct: 369 KISLGLKQTKHN 380



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 457 ITLGVKQLTPN 467


>gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 240

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 85/205 (41%), Gaps = 29/205 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +RDI    G L    GS L   G T+ +          E       G+   
Sbjct: 4   REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAA----ASEGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y  LP AT + S       R+G  +  EI   RL  R++   +   A    T+ I
Sbjct: 60  WVTAEYAMLPQATHDRSSRESVKGRIGGRT-HEI--SRLVGRSLRATIDDKALGENTITI 116

Query: 426 VSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G+ +AL D           AG P+ + VA I++G+V    D +
Sbjct: 117 DCDVLQADGGTRTAAITGAYIALADAVAHLKGLGATAGEPLVESVAAISVGIV----DGV 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED   H D  V  T SG
Sbjct: 173 PMLDLPYVEDVRAHTDMNVVMTGSG 197


>gi|257455894|ref|ZP_05621111.1| protein tex [Enhydrobacter aerosaccus SK60]
 gi|257446640|gb|EEV21666.1| protein tex [Enhydrobacter aerosaccus SK60]
          Length = 849

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ E     +G V  V  FG FV     +DGLVHIS++  E +A   + VK 
Sbjct: 683 RDDVNSLNDLTE-GMTLEGVVTNVTSFGCFVDVGVHQDGLVHISEMGNEFIADPLNHVKP 741

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V V+++  D +R ++  SMK
Sbjct: 742 GDIVTVRVISVDAERKRVGFSMK 764


>gi|226227195|ref|YP_002761301.1| 30S ribosomal protein S1 [Gemmatimonas aurantiaca T-27]
 gi|226090386|dbj|BAH38831.1| 30S ribosomal protein S1 [Gemmatimonas aurantiaca T-27]
          Length = 585

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           G+V  +  FGAFV      DGL+HIS +S T+RV   S+VVK+GD V V +L+ D   K 
Sbjct: 408 GKVRNLTSFGAFVEIEPGIDGLIHISDMSWTKRVQHPSEVVKKGDAVDVVILNIDSENKR 467

Query: 683 IKLSMKVVDQN 693
           I L +K  +++
Sbjct: 468 ISLGLKQAEED 478



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           +++ KG V  + DFGAF+   G  DGL+HI+ +S  R++  S++V+ G  + +K+LD D 
Sbjct: 231 DQVRKGVVKNITDFGAFIDLGGV-DGLLHITDMSWGRISHPSEMVQIGMELEIKVLDIDW 289

Query: 679 DRGKIKLSMK 688
           +R +I L +K
Sbjct: 290 ERERISLGLK 299



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+VV + ++GAF+      +GLVHIS++S T  V   S +V  G+ +   +L  D+   K
Sbjct: 321 GKVVSITNYGAFIELEPGIEGLVHISEMSWTRNVRHPSKIVSIGEAIEAVVLKVDETEEK 380

Query: 683 IKLSMKVVDQN 693
           I L MK  +Q+
Sbjct: 381 ISLGMKQTEQD 391


>gi|187931269|ref|YP_001891253.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
 gi|226736911|sp|B2SF43|RNPH_FRATM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187712178|gb|ACD30475.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 235

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     +   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  TA    T++I 
Sbjct: 59  --LTAEYGMLPRSTHMRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA               P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|145344629|ref|XP_001416831.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
           lucimarinus CCE9901]
 gi|144577057|gb|ABO95124.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
           lucimarinus CCE9901]
          Length = 352

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 10/80 (12%)

Query: 627 VVKVMDFGAFVHFCGAR------DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           V  + DFGAFV  C  +      +GLVHIS++S  R++   D VK G   +VK+L+ +D 
Sbjct: 164 VTSLSDFGAFVEVCDGQGEASGLEGLVHISEISWNRISHPRDAVKVGQREFVKVLEVNDE 223

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
            G+I  S+K   Q    P++
Sbjct: 224 TGRINFSIK---QTQADPLM 240


>gi|126653283|ref|ZP_01725394.1| hypothetical protein BB14905_08913 [Bacillus sp. B14905]
 gi|126589957|gb|EAZ84086.1| hypothetical protein BB14905_08913 [Bacillus sp. B14905]
          Length = 145

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|326791629|ref|YP_004309450.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
 gi|326542393|gb|ADZ84252.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
          Length = 134

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +I +G V  +  FGAFV       GLVHIS ++   +   +D VK GD V VK+L  
Sbjct: 6   QVGQIIEGTVTGIKPFGAFVSLDETTQGLVHISHITHGYLENINDAVKVGDQVKVKILSI 65

Query: 678 D-DRGKIKLSMK 688
           D ++ KI LS+K
Sbjct: 66  DTEKNKISLSIK 77


>gi|294675912|ref|YP_003576527.1| S1 RNA binding domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294474732|gb|ADE84120.1| S1 RNA binding domain protein [Rhodobacter capsulatus SB 1003]
          Length = 769

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V  FGAFV     +DGLVHISQL+   V    +VVK GD V V++ + D  R +
Sbjct: 652 EGTVTNVAAFGAFVDIGVHQDGLVHISQLADRFVKDPHEVVKAGDVVKVRVTEVDVARKR 711

Query: 683 IKLSMK 688
           I L+M+
Sbjct: 712 IALTMR 717


>gi|257084198|ref|ZP_05578559.1| S1 RNA binding domain-containing protein [Enterococcus faecalis
           Fly1]
 gi|256992228|gb|EEU79530.1| S1 RNA binding domain-containing protein [Enterococcus faecalis
           Fly1]
          Length = 157

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKIGLSIR 74


>gi|254670492|emb|CBA06216.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha153]
          Length = 589

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 223 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 281

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 282 QRVSLGMK 289



 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 304 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 362

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 363 EIDESRRRISLGMKQCQAN 381



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 398 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 457

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 458 ISLGIK---QLEGDPF 470


>gi|209883567|ref|YP_002287424.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
 gi|226736922|sp|B6JCH9|RNPH_OLICO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209871763|gb|ACI91559.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
          Length = 238

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G+++   GS +   GDT+ +V  TL    +E+    L G  R
Sbjct: 1   MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E  R  A + ++ G      RL  R++   +   A     + I  
Sbjct: 57  GWVTAEYGMLPRATHERVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWVALADC 140


>gi|219848025|ref|YP_002462458.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542284|gb|ACL24022.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 397

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ +FGAF+   GA DGL HIS+LS +RV    +V++ G  V V +++ D +R +I
Sbjct: 219 GKVNQLTNFGAFIDLGGA-DGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERI 277

Query: 684 KLSMKVVDQNTGKPI 698
            LS++ +  N  + I
Sbjct: 278 GLSIRQLQDNPWETI 292



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 13/111 (11%)

Query: 600 LAEIEAAREMI----RSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + EI+  RE I    R + D P         + ++  G V  V  FGAFV    A +GL+
Sbjct: 267 VVEIDRERERIGLSIRQLQDNPWETIDQRYTLGQLVTGPVTNVTPFGAFVQVEEAVEGLI 326

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           H S+L+ +  A+  DV++ G  V  +++  D  R ++ LS++ ++ +   P
Sbjct: 327 HASELTADPQAQPRDVLQPGQIVTARVISLDRQRQRMGLSLRRINDDEPLP 377


>gi|282849969|ref|ZP_06259352.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745]
 gi|282580406|gb|EFB85806.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745]
          Length = 766

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  
Sbjct: 632 RKHVVSLEDI-KVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD +  +++  D  R +I LS+K +     K
Sbjct: 690 GDIIEAQIISVDVKRNRIGLSVKALQPEKSK 720


>gi|182683855|ref|YP_001835602.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|307127540|ref|YP_003879571.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
 gi|182629189|gb|ACB90137.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|306484602|gb|ADM91471.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
          Length = 715

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 639 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 698

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 699 -TEREKVNLSL 708


>gi|159905922|ref|YP_001549584.1| RNA-binding S1 domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159887415|gb|ABX02352.1| RNA binding S1 domain protein [Methanococcus maripaludis C6]
          Length = 713

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  ++DFGAF+      DGL HIS+++   +    DV+  GD V V ++D D D+
Sbjct: 643 ILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDK 702

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 703 KRVSLSIK 710


>gi|118418871|gb|ABK87290.1| RNAse PH [Bacillus thuringiensis str. Al Hakam]
          Length = 251

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 7   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 62

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 63  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 122

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 123 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 179

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 180 LDLNYAEDSKADVDMNVIMTGKG 202


>gi|65321848|ref|ZP_00394807.1| COG0689: RNase PH [Bacillus anthracis str. A2012]
          Length = 258

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 186

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 187 LDLNYAEDSKADVDMNVIMTGKG 209


>gi|330980287|gb|EGH78422.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 387

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 2   AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 56

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 57  PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 86



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 101 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 159

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 160 DIDEERRRISLGIKQCKSN 178


>gi|323491001|ref|ZP_08096195.1| hypothetical protein GPDM_16571 [Planococcus donghaensis MPA1U2]
 gi|323395357|gb|EGA88209.1| hypothetical protein GPDM_16571 [Planococcus donghaensis MPA1U2]
          Length = 140

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K G+ V VK+++ 
Sbjct: 4   EVGSKLEGKVTGITNFGAFVQLPTGATGLVHISEVADNYVKDINDHLKVGEMVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|260910080|ref|ZP_05916761.1| YhgF like protein [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635792|gb|EEX53801.1| YhgF like protein [Prevotella sp. oral taxon 472 str. F0295]
          Length = 711

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 608 EMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           E + ++ D VP +  +  G V  +  FGAFV     +DGLVH+SQL+   VA  ++VVK 
Sbjct: 629 ERVHTVADLVPGM--LLPGIVTNITKFGAFVDVGVHQDGLVHVSQLANRYVADPAEVVKL 686

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVV 690
              V VK+++ D  R +I L+MK V
Sbjct: 687 HQHVQVKVVEVDTRRNRISLTMKGV 711


>gi|237748601|ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
 gi|229379963|gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
          Length = 247

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR  +++R I       +   GS L + GDT+ I   ++    +E     L G  R
Sbjct: 7   IRANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASI----EESVPPFLRGRGR 62

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       A   R+ G      RL  R+I       A    TL++  
Sbjct: 63  GWLTAEYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDC 122

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A  DA            VP+   VA I++G+    +  + L
Sbjct: 123 DVIQADGGTRTASISGVMIAAYDAFSMMVEEGLIDKVPLRHFVAAISVGV----NQGVPL 178

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G    +Q   + G  S   +   L  A++G   ++   
Sbjct: 179 LDLDYQEDSTCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQ 238

Query: 536 SKVL 539
            KVL
Sbjct: 239 KKVL 242


>gi|229101051|ref|ZP_04231831.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-28]
 gi|228682371|gb|EEL36468.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-28]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|258404285|ref|YP_003197027.1| 30S ribosomal protein S1 [Desulfohalobium retbaense DSM 5692]
 gi|257796512|gb|ACV67449.1| ribosomal protein S1 [Desulfohalobium retbaense DSM 5692]
          Length = 575

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K + G+V  ++D+GAFV      +GLVHIS++S T ++   S V + GD V V +L
Sbjct: 290 PEGEK-FSGKVTNIVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQVCQVGDEVDVVIL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D DR +I L MK V  N
Sbjct: 349 GVDSDRKRISLGMKQVRPN 367



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E  RE  R  +    E +++  G+V  + ++G FV   G  DGL+HI+ ++ +R+    
Sbjct: 189 LEEERESKRQELLKTLEEDQVVHGKVKNITEYGVFVDL-GGLDGLLHITDMAWKRIRHPK 247

Query: 662 DVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           ++V+ GD + +K+L+FD    K+ L +K
Sbjct: 248 EMVQLGDDLELKVLNFDQESEKVSLGLK 275



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V  + DFG FV      +GLVH+S+LS +++   S+  +EG  V  K++    D  +
Sbjct: 470 EGKVTNITDFGLFVEVEEGIEGLVHLSELSRKKIKTPSEHFEEGQEVSAKVIHVSGDERR 529

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 530 LGLSIK 535


>gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 29/212 (13%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R DGR ++ +R+I+ +    ++  GS+L   G T+ +   +   R         
Sbjct: 1   MTDDTPRHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNRVPRWK---- 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           +G+ +      Y  LP AT E  RM      G    R     RL  R++  V+   A   
Sbjct: 57  AGSGQGWVTAEYAMLPRATNE--RMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGE 114

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLV 467
            T+ I  ++ ++DG +  A + G+ +AL DA               P+   VA +++G+V
Sbjct: 115 NTVVIDCDVLQADGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIV 174

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            DG   + L+ +   ED     D  V  T SG
Sbjct: 175 -DGKPLLDLAYV---EDVRAETDMNVVMTGSG 202


>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
          Length = 251

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 22/237 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDEQYVDSL 366
           +R DGR ++ +R I  ++G+     GS+   +G T+ +  V       G+R   Q+  ++
Sbjct: 13  LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425
              Q       ++    +TGE  +     R+        R+A+   + +   +P+T + +
Sbjct: 73  VNCQ-------FSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAI-KVELYPWTQIDV 124

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+  +DG    A V  ++LAL+DAG+P+ + V      L    ++ + L D+S  E+ 
Sbjct: 125 YVEVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTASL---ANNDVPLLDVSHQEEI 181

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +G     VA        + M+M     S+   V  LQ+     L    ++  +L E+
Sbjct: 182 IGGPTLTVAALPMSGKIVLMEM-----SQRFHVDHLQKVLDKALQGCKDIKSILDEA 233


>gi|260889914|ref|ZP_05901177.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
 gi|260860520|gb|EEX75020.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
          Length = 239

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L + VR + R ++ +R++      +    GS L   G+T+ I   T+    +E+    L 
Sbjct: 5   LGENVRKNNRKNDEMREVKVTKNYIIHPEGSVLMEFGNTKVICNATV----EEKIPRWLK 60

Query: 368 GTQRNDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           GT        Y+ LP AT       S  G  S R +   RL  RA+   +        T+
Sbjct: 61  GTGSGWVTAEYSMLPRATNARVQRESTKGKLSGRTMEIQRLIGRALRAAIDLEKLGERTI 120

Query: 424 RIVSEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKD 469
            I  ++ ++DG +  A++ G+ LA       L+D G    +PI   VA I++G V++
Sbjct: 121 MIDCDVIQADGGTRTASITGAYLALELAIEKLIDEGKLKDIPIKSKVAAISVGKVRN 177


>gi|183603638|ref|ZP_02964444.1| protein tex [Streptococcus pneumoniae CDC3059-06]
 gi|183575709|gb|EDT96237.1| protein tex [Streptococcus pneumoniae CDC3059-06]
          Length = 805

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 729 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 788

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 789 -TEREKVNLSL 798


>gi|158522133|ref|YP_001530003.1| 30S ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
 gi|158510959|gb|ABW67926.1| RNA binding S1 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 492

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 10/116 (8%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +++TG+K      G +KI   SL+  +AA +  +++ +  +     +G+V +  DFGAFV
Sbjct: 265 IDRTGSKT-----GGLKI---SLSAKQAAVDPWKTVGEKYKEGDKIEGKVTRCADFGAFV 316

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                 +GLVHIS++S T RV K  DV + GD V V +   D    ++ LS+K  +
Sbjct: 317 EVEPGIEGLVHISEMSHTRRVVKAEDVARPGDRVAVMVTSVDPVNRRLSLSIKAAE 372



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+VV++M +GAF+      +G+VHIS+LS  RV   S+V   G+ + V++L  D  G
Sbjct: 210 IVDGRVVRIMPYGAFMELQPGVEGMVHISELSWSRVGDPSEVTAVGEVLPVRILAIDRTG 269

Query: 682 ------KIKLSMK 688
                 KI LS K
Sbjct: 270 SKTGGLKISLSAK 282


>gi|228941669|ref|ZP_04104216.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974596|ref|ZP_04135162.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981191|ref|ZP_04141491.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228778391|gb|EEM26658.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228784999|gb|EEM33012.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817881|gb|EEM63959.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942277|gb|AEA18173.1| ribonuclease PH [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|229074292|ref|ZP_04207336.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-18]
 gi|229094955|ref|ZP_04225957.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-29]
 gi|229113909|ref|ZP_04243341.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-3]
 gi|228669550|gb|EEL24960.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-3]
 gi|228688468|gb|EEL42344.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-29]
 gi|228708844|gb|EEL60973.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-18]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 240

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYPEDSAAETDLNVVMTSAG 197


>gi|229543361|ref|ZP_04432421.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229327781|gb|EEN93456.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 128

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +Y G+V  +  FGAFV       GLVHIS++    V    D V  G+ V VK+L  
Sbjct: 5   EAGNVYTGKVTGIKPFGAFVALDEETQGLVHISEIKHGYVKDIHDHVHIGNEVKVKVLSV 64

Query: 678 D-DRGKIKLSMKVVD----QNTGKP 697
           D + GKI LS+K  +    Q+T KP
Sbjct: 65  DEENGKISLSIKATEEAPHQDTRKP 89


>gi|330939639|gb|EGH42945.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 71  AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 125

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 126 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 155



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 170 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 228

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 229 DIDEERRRISLGIKQCKSN 247


>gi|330808293|ref|YP_004352755.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376401|gb|AEA67751.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 562

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 178 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 232

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 233 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 262



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 277 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 336 DIDEERRRISLGIKQCKSN 354


>gi|228917119|ref|ZP_04080677.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842537|gb|EEM87627.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLRAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|70731658|ref|YP_261400.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf-5]
 gi|68345957|gb|AAY93563.1| ribosomal protein S1 [Pseudomonas fluorescens Pf-5]
          Length = 564

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 178 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 232

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 233 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 262



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 277 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 336 DIDEERRRISLGIKQCKSN 354


>gi|77460293|ref|YP_349800.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
 gi|77384296|gb|ABA75809.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
          Length = 561

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 178 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 232

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 233 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 262



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 277 PEGTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 336 DIDEERRRISLGIKQCKSN 354


>gi|75760745|ref|ZP_00740767.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218899648|ref|YP_002448059.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228903010|ref|ZP_04067149.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
 gi|228967584|ref|ZP_04128608.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|226736885|sp|B7IIZ1|RNPH_BACC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|74491773|gb|EAO54967.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218545068|gb|ACK97462.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228792108|gb|EEM39686.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856603|gb|EEN01124.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|330876614|gb|EGH10763.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 386

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 1   AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 55

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 56  PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 85



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 100 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 158

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 159 DIDEERRRISLGIKQCKSN 177


>gi|329942819|ref|ZP_08291598.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|328815079|gb|EGF85068.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
          Length = 584

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD+V  K++  D D 
Sbjct: 481 VISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDH 540

Query: 681 GKIKLSMK 688
            K+ LS+K
Sbjct: 541 KKVSLSVK 548



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 370 ISLGLKQTEHN 380



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAE---IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+NID    V ++   L E   I    E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINIDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDI 298


>gi|322434828|ref|YP_004217040.1| Tex-like protein protein [Acidobacterium sp. MP5ACTX9]
 gi|321162555|gb|ADW68260.1| Tex-like protein protein [Acidobacterium sp. MP5ACTX9]
          Length = 765

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +R + DV + + + +G V  V  FGAFV     +DGLVHIS+LS   +   ++ VK G
Sbjct: 634 EGVRELADV-QPDMVLEGVVTNVTKFGAFVDIGVHQDGLVHISELSNRFLKDPNEAVKVG 692

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVV 690
             V VK++  D   K I LSMK +
Sbjct: 693 QIVKVKVISADMASKRIALSMKAL 716


>gi|254720231|ref|ZP_05182042.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
 gi|265985243|ref|ZP_06097978.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
 gi|306838627|ref|ZP_07471463.1| RNA-binding S1 domain-containing protein [Brucella sp. NF 2653]
 gi|264663835|gb|EEZ34096.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
 gi|306406270|gb|EFM62513.1| RNA-binding S1 domain-containing protein [Brucella sp. NF 2653]
          Length = 767

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|269120934|ref|YP_003309111.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
 gi|268614812|gb|ACZ09180.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
          Length = 232

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 25/198 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R+I      +    GS L   G+T+ I   T+    +E+    L G+  
Sbjct: 1   MRNNNRKNDELREIKITKNFIMHPEGSVLIEFGNTKVICNATV----EEKVPPFLKGSGS 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ +P AT      EV++ G P+ R +   RL  R++   +        T+ + 
Sbjct: 57  GWVTAEYSMIPRATNVRTQREVNK-GKPTGRTMEIQRLIGRSLRSAVDLKKLGERTIIVD 115

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G  LA       L+++G+    P+   VA I++G VK G+   I
Sbjct: 116 CDVIQADGGTRTASITGGYLALETAVEQLINSGLLSQNPVIAKVAAISVGKVK-GE---I 171

Query: 476 LSDISGDEDHLGHMDFKV 493
           L D+   ED L  +D  +
Sbjct: 172 LLDLEYSEDSLAEVDMNI 189


>gi|229098953|ref|ZP_04229888.1| Ribonuclease PH [Bacillus cereus Rock3-29]
 gi|228684451|gb|EEL38394.1| Ribonuclease PH [Bacillus cereus Rock3-29]
          Length = 258

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 186

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 187 LDLNYAEDSKADVDMNVIMTGKG 209


>gi|212638433|ref|YP_002314953.1| ribonuclease PH [Anoxybacillus flavithermus WK1]
 gi|226736883|sp|B7GH12|RNPH_ANOFW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|212559913|gb|ACJ32968.1| Ribonuclease PH [Anoxybacillus flavithermus WK1]
          Length = 255

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R +  +   L+   GS L   GDT+ I   ++    +++    + G  +
Sbjct: 1   MRVDGRTNDELRPVHIEPNYLKHPEGSVLISIGDTKVICTASI----EDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  +P AT      E S+ G  S R +   RL  RA+  V+        T+ I 
Sbjct: 57  GWITAEYAMIPRATEQRNIREASK-GKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A+  A            +PI+  +A  ++G+  DG+  II
Sbjct: 116 CDVIQADGGTRTASITGAFVAMTLALGKMVEEKKLPALPITDFLAATSVGI--DGEHGII 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D++  ED    +D  +  T SG
Sbjct: 174 L-DLNYIEDSKAQVDMNIVMTGSG 196


>gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ]
 gi|259494117|sp|C1DI48|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ]
          Length = 239

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR    +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVS----AEAGVPRFLKGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE     A   R+ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA           G P+ + VA +++G+ + G+  +   
Sbjct: 119 VIQADGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQ-GEPIL--- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  TD+G
Sbjct: 175 DLDYPEDSDAETDLNVVMTDAG 196



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 24/175 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYA 69
           RP+++ T    R ++G+VL  +G+T V+ TV  +    R LK GQ    LT  Y     A
Sbjct: 13  RPIRI-TRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLK-GQGKGWLTAEYGMLPRA 70

Query: 70  VGKIPGGYLRRES---RPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLES 124
            G+     + RE+   R     + I R+I RS+R     SK  +N   V  +V+Q D  +
Sbjct: 71  TGE----RMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQADGGT 126

Query: 125 -----SPHVVSMVAASAAL----MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
                +  +V++V A A L     L G P +  V    V    G+ +L+    ED
Sbjct: 127 RTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPED 181


>gi|229589170|ref|YP_002871289.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
 gi|229361036|emb|CAY47898.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
          Length = 563

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 178 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 232

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 233 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 262



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 277 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 336 DIDEERRRISLGIKQCKSN 354


>gi|172079513|ref|ZP_02932128.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|172043456|gb|EDT51502.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
          Length = 790

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 714 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 773

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 774 -TEREKVNLSL 783


>gi|197119621|ref|YP_002140048.1| 30S ribosomal protein S1 [Geobacter bemidjiensis Bem]
 gi|197088981|gb|ACH40252.1| ribosomal protein S1 [Geobacter bemidjiensis Bem]
          Length = 584

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++   L E E  +    ++  + E   I  G V  + ++GAFV   G  DGL+H++
Sbjct: 189 GNLVLSRRVLLEEERDKARTETLATLKE-GDIVNGVVKNIAEYGAFVDLGGV-DGLLHVT 246

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S  R+   S++VK GDT+ V +L +D ++GKI L +K
Sbjct: 247 DMSWGRLGHPSEMVKVGDTLNVMVLKYDREKGKISLGLK 285



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG+V  V DFG FV      +GL+H+S++S E+VA   D    GD +   +L+ D    K
Sbjct: 480 KGRVTSVTDFGIFVEIEEGIEGLIHVSEISYEKVASPKDFANVGDELEAVVLNVDMVEKK 539

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 540 IALSIKAL 547



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAF+      +GLVH+S++S T RV   S+++K G+ V   +L  D    +
Sbjct: 307 GKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEILKVGEEVEAVILGVDPGNRR 366

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 367 ISLGLKQTEIN 377



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +GQ+  + DFG F+      DGLVH+S +S T RV    ++  +G TV   +L+ D
Sbjct: 393 EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTRRVKHPGEMFAKGQTVQAVVLNID 448


>gi|134045501|ref|YP_001096987.1| RNA-binding S1 domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132663126|gb|ABO34772.1| RNA binding S1 domain protein [Methanococcus maripaludis C5]
          Length = 713

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  ++DFGAF+      DGL HIS+++   +    DV+  GD V V ++D D D+
Sbjct: 643 ILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVMDIDFDK 702

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 703 KRVSLSIK 710


>gi|332685801|ref|YP_004455575.1| RNA binding protein, contains ribosomal protein S1 domain
           [Melissococcus plutonius ATCC 35311]
 gi|332369810|dbj|BAK20766.1| RNA binding protein, contains ribosomal protein S1 domain
           [Melissococcus plutonius ATCC 35311]
          Length = 155

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EIGAKLSGKVSGITNFGAFIDLGDGKTGLVHISEISNGFVKDIHDVLTVGDKVTVKVTAV 63

Query: 678 DDRGKIKLSMKVVDQN 693
            + GKI LS++   +N
Sbjct: 64  GNDGKIGLSIQKAQEN 79


>gi|330897209|gb|EGH28628.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 467

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 82  AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 136

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 137 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 166



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 181 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 239

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 240 DIDEERRRISLGIKQCKSN 258


>gi|332287411|ref|YP_004422312.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|325506682|gb|ADZ18320.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
          Length = 501

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD+V  K++  D D 
Sbjct: 401 VISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDH 460

Query: 681 GKIKLSMK 688
            K+ LS+K
Sbjct: 461 KKVSLSVK 468



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D GK
Sbjct: 230 GKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGK 289

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 290 ISLGLKQTEHN 300



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAE---IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+NID    V ++   L E   I    E+I  IT    + +  KG V  + DFG F+   
Sbjct: 106 KINIDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 160

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 161 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDI 218


>gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
 gi|259494125|sp|C3K479|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
          Length = 240

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL+D            AG P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSTG 197


>gi|119945506|ref|YP_943186.1| RNA-binding S1 domain-containing protein [Psychromonas ingrahamii
           37]
 gi|119864110|gb|ABM03587.1| RNA binding S1 domain protein [Psychromonas ingrahamii 37]
          Length = 728

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  I+D+ E   + +G +  V +FGAFV     +DGLVHISQL+   V+    +VK G  
Sbjct: 645 INKISDLQE-GMLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQL 703

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V++++ D  R +I LSM++
Sbjct: 704 VNVRVVEIDVQRKRIALSMRL 724


>gi|29374903|ref|NP_814056.1| hypothetical protein EF0262 [Enterococcus faecalis V583]
 gi|227555908|ref|ZP_03985955.1| RNA-binding protein [Enterococcus faecalis HH22]
 gi|229546908|ref|ZP_04435633.1| RNA-binding protein [Enterococcus faecalis TX1322]
 gi|229550497|ref|ZP_04439222.1| RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|255971762|ref|ZP_05422348.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255974762|ref|ZP_05425348.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256618327|ref|ZP_05475173.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256762057|ref|ZP_05502637.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
 gi|256855216|ref|ZP_05560577.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256956809|ref|ZP_05560980.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256960615|ref|ZP_05564786.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|256964185|ref|ZP_05568356.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|257078479|ref|ZP_05572840.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|257081550|ref|ZP_05575911.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|257088025|ref|ZP_05582386.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|257088702|ref|ZP_05583063.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|257417628|ref|ZP_05594622.1| RNA binding protein S1 [Enterococcus faecalis AR01/DG]
 gi|257418647|ref|ZP_05595641.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|257421551|ref|ZP_05598541.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|293382702|ref|ZP_06628627.1| S1 RNA-binding domain protein [Enterococcus faecalis R712]
 gi|293388116|ref|ZP_06632643.1| S1 RNA-binding domain protein [Enterococcus faecalis S613]
 gi|294779312|ref|ZP_06744715.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|300862238|ref|ZP_07108318.1| S1 RNA binding domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|307268515|ref|ZP_07549890.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|307274226|ref|ZP_07555434.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|307276451|ref|ZP_07557574.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|307278661|ref|ZP_07559731.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|307286959|ref|ZP_07567034.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|307290192|ref|ZP_07570110.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|312901066|ref|ZP_07760355.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
 gi|312904629|ref|ZP_07763784.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|312908598|ref|ZP_07767540.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|312909254|ref|ZP_07768111.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
 gi|312952662|ref|ZP_07771526.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|29342361|gb|AAO80127.1| S1 RNA-binding domain protein [Enterococcus faecalis V583]
 gi|227174965|gb|EEI55937.1| RNA-binding protein [Enterococcus faecalis HH22]
 gi|229304354|gb|EEN70350.1| RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|229307836|gb|EEN73823.1| RNA-binding protein [Enterococcus faecalis TX1322]
 gi|255962780|gb|EET95256.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255967634|gb|EET98256.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256597854|gb|EEU17030.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256683308|gb|EEU23003.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
 gi|256709729|gb|EEU24776.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256947305|gb|EEU63937.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256951111|gb|EEU67743.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|256954681|gb|EEU71313.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|256986509|gb|EEU73811.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|256989580|gb|EEU76882.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|256996055|gb|EEU83357.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|256997514|gb|EEU84034.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|257159456|gb|EEU89416.1| RNA binding protein S1 [Enterococcus faecalis ARO1/DG]
 gi|257160475|gb|EEU90435.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|257163375|gb|EEU93335.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|291079862|gb|EFE17226.1| S1 RNA-binding domain protein [Enterococcus faecalis R712]
 gi|291082492|gb|EFE19455.1| S1 RNA-binding domain protein [Enterococcus faecalis S613]
 gi|294453598|gb|EFG21997.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|295112547|emb|CBL31184.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Enterococcus sp. 7L76]
 gi|300848763|gb|EFK76520.1| S1 RNA binding domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|306498748|gb|EFM68247.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|306501905|gb|EFM71194.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|306504721|gb|EFM73921.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|306506931|gb|EFM76078.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|306509188|gb|EFM78250.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|306515176|gb|EFM83716.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|310625385|gb|EFQ08668.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|310629450|gb|EFQ12733.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|310631981|gb|EFQ15264.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|311290496|gb|EFQ69052.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
 gi|311291812|gb|EFQ70368.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
 gi|315026780|gb|EFT38712.1| S1 RNA binding domain protein [Enterococcus faecalis TX2137]
 gi|315028819|gb|EFT40751.1| S1 RNA binding domain protein [Enterococcus faecalis TX4000]
 gi|315032982|gb|EFT44914.1| S1 RNA binding domain protein [Enterococcus faecalis TX0017]
 gi|315036605|gb|EFT48537.1| S1 RNA binding domain protein [Enterococcus faecalis TX0027]
 gi|315145392|gb|EFT89408.1| S1 RNA binding domain protein [Enterococcus faecalis TX2141]
 gi|315147116|gb|EFT91132.1| S1 RNA binding domain protein [Enterococcus faecalis TX4244]
 gi|315151131|gb|EFT95147.1| S1 RNA binding domain protein [Enterococcus faecalis TX0012]
 gi|315153554|gb|EFT97570.1| S1 RNA binding domain protein [Enterococcus faecalis TX0031]
 gi|315156266|gb|EFU00283.1| S1 RNA binding domain protein [Enterococcus faecalis TX0043]
 gi|315158589|gb|EFU02606.1| S1 RNA binding domain protein [Enterococcus faecalis TX0312]
 gi|315160782|gb|EFU04799.1| S1 RNA binding domain protein [Enterococcus faecalis TX0645]
 gi|315165846|gb|EFU09863.1| S1 RNA binding domain protein [Enterococcus faecalis TX1302]
 gi|315168155|gb|EFU12172.1| S1 RNA binding domain protein [Enterococcus faecalis TX1341]
 gi|315171405|gb|EFU15422.1| S1 RNA binding domain protein [Enterococcus faecalis TX1342]
 gi|315573570|gb|EFU85761.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309B]
 gi|315579381|gb|EFU91572.1| S1 RNA binding domain protein [Enterococcus faecalis TX0630]
 gi|315582082|gb|EFU94273.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309A]
 gi|323479475|gb|ADX78914.1| S1 RNA binding domain protein [Enterococcus faecalis 62]
 gi|327534059|gb|AEA92893.1| S1 RNA-binding domain protein [Enterococcus faecalis OG1RF]
          Length = 159

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKIGLSIR 74


>gi|62185082|ref|YP_219867.1| 30S ribosomal protein S1 [Chlamydophila abortus S26/3]
 gi|62148149|emb|CAH63906.1| 30s ribosomal protein S1 [Chlamydophila abortus S26/3]
          Length = 581

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD+V  K++  D D 
Sbjct: 481 VISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDH 540

Query: 681 GKIKLSMK 688
            K+ LS+K
Sbjct: 541 KKVSLSVK 548



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 370 ISLGLKQTEHN 380



 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAE---IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+NID    V ++   L E   I    E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINIDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDI 298


>gi|228923234|ref|ZP_04086524.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836440|gb|EEM81791.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|228906025|ref|ZP_04069917.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 200]
 gi|228937536|ref|ZP_04100178.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970423|ref|ZP_04131078.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228976993|ref|ZP_04137401.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis Bt407]
 gi|228782740|gb|EEM30910.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis Bt407]
 gi|228789309|gb|EEM37233.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228822147|gb|EEM68133.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228853628|gb|EEM98393.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 200]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|229192693|ref|ZP_04319652.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
 gi|228590783|gb|EEK48643.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
          Length = 258

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 186

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 187 LDLNYAEDSKADVDMNVIMTGKG 209


>gi|146306885|ref|YP_001187350.1| 30S ribosomal protein S1 [Pseudomonas mendocina ymp]
 gi|330502874|ref|YP_004379743.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
 gi|145575086|gb|ABP84618.1| SSU ribosomal protein S1P [Pseudomonas mendocina ymp]
 gi|328917160|gb|AEB57991.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
          Length = 560

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 231 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 260



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PENTRVM-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCKTN 352


>gi|228954763|ref|ZP_04116785.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|107124175|gb|ABF83610.1| Rph [Bacillus thuringiensis serovar kurstaki]
 gi|228804961|gb|EEM51558.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQVEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|28868956|ref|NP_791575.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|66046871|ref|YP_236712.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B728a]
 gi|71737484|ref|YP_275804.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|213968716|ref|ZP_03396858.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
 gi|237799023|ref|ZP_04587484.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|257485842|ref|ZP_05639883.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289623736|ref|ZP_06456690.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648178|ref|ZP_06479521.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289677165|ref|ZP_06498055.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae FF5]
 gi|298488021|ref|ZP_07006058.1| SSU ribosomal protein S1p [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|301381331|ref|ZP_07229749.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato Max13]
 gi|302130032|ref|ZP_07256022.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302187670|ref|ZP_07264343.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae 642]
 gi|28852196|gb|AAO55270.1| ribosomal protein S1 [Pseudomonas syringae pv. tomato str. DC3000]
 gi|63257578|gb|AAY38674.1| Ribosomal protein S1 [Pseudomonas syringae pv. syringae B728a]
 gi|71558037|gb|AAZ37248.1| ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|213926649|gb|EEB60202.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
 gi|298157300|gb|EFH98383.1| SSU ribosomal protein S1p [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320323347|gb|EFW79435.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320327544|gb|EFW83556.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330866103|gb|EGH00812.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330877036|gb|EGH11185.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330889341|gb|EGH22002.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. mori str.
           301020]
 gi|330960540|gb|EGH60800.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330972340|gb|EGH72406.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330986661|gb|EGH84764.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012931|gb|EGH92987.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331016846|gb|EGH96902.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
 gi|331021877|gb|EGI01934.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 563

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 178 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 232

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 233 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 262



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 277 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 336 DIDEERRRISLGIKQCKSN 354


>gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
 gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
          Length = 255

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +       +   GS L   G+T+ I    +    +E+    L  + + 
Sbjct: 3   RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMV----EERVPHFLKNSGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP +T      E SR G    R     RL  RA+  V+   A    T+ I  
Sbjct: 59  WVTAEYSMLPSSTNTRKIRESSR-GKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL++A            +PI   V+ I++G+V D      +
Sbjct: 118 DVIQADGGTRTASITGAFIALVEAINSVKEAKKITYIPIKNYVSAISVGIVNDQP----V 173

Query: 477 SDISGDEDHLGHMDFKVAGTD 497
            D+  +ED    +D  +  TD
Sbjct: 174 LDLCYEEDSKAMVDMNIVMTD 194


>gi|312959704|ref|ZP_07774221.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
 gi|311286421|gb|EFQ64985.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
          Length = 560

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 178 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 232

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 233 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 262



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 277 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 336 DIDEERRRISLGIKQCKSN 354


>gi|302061501|ref|ZP_07253042.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato K40]
          Length = 553

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 168 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 222

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 223 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 252



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 267 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 325

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 326 DIDEERRRISLGIKQCKSN 344


>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
 gi|259494118|sp|C4LJY5|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
          Length = 254

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 28/248 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R +    G      GS L   G+T+ +   ++  R      DS  G   
Sbjct: 5   VRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGW-- 62

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLRI 425
                 Y+ LP AT E  RM   S R    G      RL  R++   +   A    T+ +
Sbjct: 63  --LTAEYSMLPSATAE--RMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTIAL 118

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISK-----------PVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA   +             PVA +++GL+   D  +
Sbjct: 119 DCDVLQADGGTRTASITGAYVALADALTYLEAEGLVSQNALLPPVAAVSVGLI---DGHV 175

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            L D+  +ED    +D  V  T+SG    +Q   +    S   ++  +  A++G   ++ 
Sbjct: 176 CL-DLPYEEDSRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSELIR 234

Query: 534 EMSKVLSE 541
              + LS+
Sbjct: 235 AQKEALSK 242


>gi|298528791|ref|ZP_07016195.1| RNA binding S1 domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512443|gb|EFI36345.1| RNA binding S1 domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 476

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 5/102 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G V+I    L+  +A  +   SIT+  E   + +G V +V  FGAFV      +GLVH
Sbjct: 258 DKGQVRIG---LSMKQAQADPWESITENFEPGSVVEGVVTRVAPFGAFVEISPGLEGLVH 314

Query: 649 ISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           +S++S  +RV+K  + V+ G  V VK+   D    +I LSM+
Sbjct: 315 VSEMSYLKRVSKPEEEVQPGQKVRVKVKGIDSLERRISLSMR 356



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           + +G V +V  +G FV      +GLVHIS++S  R     ++V  GDTV V LL  +  D
Sbjct: 199 VLQGTVTRVEPYGVFVEVAPGLEGLVHISEMSWSRSLAPEEIVSVGDTVSVHLLGIEEKD 258

Query: 680 RGKIK--LSMK 688
           +G+++  LSMK
Sbjct: 259 KGQVRIGLSMK 269


>gi|149920266|ref|ZP_01908737.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1]
 gi|149818853|gb|EDM78293.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1]
          Length = 567

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +  G +  + DFG FV      DGLVHI+ LS T+RV   SD+ K+GD V   +L+ D+ 
Sbjct: 377 VVAGVIRNIADFGVFVELEPGIDGLVHITDLSWTQRVRHPSDIYKKGDEVQAAVLNIDNS 436

Query: 681 G---KIKLSMK 688
           G   KI L +K
Sbjct: 437 GEKPKISLGIK 447



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 11/92 (11%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERV 657
           +EA R  ++  T    +NK+ +GQ+V+     + D+GAF+   G  DGL+HI+ +S  R+
Sbjct: 185 LEAERAELKHDT----LNKLAEGQIVEGVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRI 239

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
              S++ + GD V VK+L F+    ++ L +K
Sbjct: 240 NHPSELFQVGDKVKVKVLKFNSESERVSLGLK 271



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 610 IRSITDVPEVNK--------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKT 660
           ++ IT  P +N         + +G+VV + D+GAF+      +GLVH+S++S T ++   
Sbjct: 270 LKQITPDPWINAEEKYIPGTVVQGKVVSIKDYGAFIELEEGIEGLVHVSEMSWTRQIKNP 329

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             VV   D V   +LD D  + +I L MK +++N
Sbjct: 330 KQVVNLSDEVKAVVLDIDVSQNRISLGMKQLEEN 363



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E   A +NID+ G     S  + ++ ++    R   + P + K+ + +++K+ DFGAF  
Sbjct: 425 EVQAAVLNIDNSGEKPKISLGIKQL-SSDPWDRVPYEFP-IGKVTEVKILKLTDFGAFAE 482

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                +GL+HIS++S ER+     V++ G     +++  D +  KI LS+K
Sbjct: 483 IIPGVEGLIHISEISEERIEDPRQVLEPGQECRAEVIQLDANERKIGLSIK 533


>gi|94499395|ref|ZP_01305932.1| ribosomal protein S1 [Oceanobacter sp. RED65]
 gi|94428149|gb|EAT13122.1| ribosomal protein S1 [Oceanobacter sp. RED65]
          Length = 560

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ +  EV  I K     + D+GAFV   G  DGL+HI+ ++ +R+   S++V  G
Sbjct: 184 ELLANLQEGQEVTGIVKN----LTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVNVG 238

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D + VK+L FD +R ++ L +K
Sbjct: 239 DEIQVKVLKFDRERNRVSLGLK 260



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PENTKVT-AKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDDVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGIK 347


>gi|315121831|ref|YP_004062320.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495233|gb|ADR51832.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 250

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+ GR    +R+IS   G+ +   GS L   G+T  +   TL    +E+    L  T+ 
Sbjct: 3   MRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATL----EEKVPIWLRNTKN 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   +  A S R+ G      RL  R++  ++  +A  P  + I  
Sbjct: 59  GWITAEYGMLPRSTGSRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A + G+ +AL D 
Sbjct: 119 DVIQADGGTRTAAITGAWIALHDC 142


>gi|271964747|ref|YP_003338943.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
 gi|270507922|gb|ACZ86200.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
          Length = 278

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            +  T V  V +I  G V K++ FGAFV      +GL+H+S+LST  +     VV+EG+ 
Sbjct: 193 FQQFTRVIHVGQILHGPVTKLVPFGAFVRVADGVEGLIHLSELSTAPIETPDQVVQEGEE 252

Query: 670 VWVKLLDFD 678
           V V + D D
Sbjct: 253 VTVIVTDID 261


>gi|229021837|ref|ZP_04178413.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1272]
 gi|228739477|gb|EEL89897.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1272]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|119512637|ref|ZP_01631712.1| Ribonuclease PH [Nodularia spumigena CCY9414]
 gi|119462708|gb|EAW43670.1| Ribonuclease PH [Nodularia spumigena CCY9414]
          Length = 247

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R IS   G  +   GS L   GDTQ +  V++     E     L+GT + 
Sbjct: 5   RPDGRQPYELRPISFHAGFTRFAPGSVLTKFGDTQILCTVSV----SEGVPKFLAGTGKG 60

Query: 373 DFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T E     +   S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTSEYRMLPSSTQERQPRELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A + G  +AL  A       GV    P+   VA I++GL++ G+ ++ L+ I
Sbjct: 121 QADAGTRTAAITGGFVALAHAVGQLLHSGVLERSPLCGQVAAISVGLLQ-GEPYLDLNYI 179

Query: 480 SGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
              ED    +DF V    + GI  +Q   + G  S   +   L  A++G   +L
Sbjct: 180 ---EDVGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLL 230


>gi|37523713|ref|NP_927090.1| hypothetical protein glr4144 [Gloeobacter violaceus PCC 7421]
 gi|35214718|dbj|BAC92085.1| glr4144 [Gloeobacter violaceus PCC 7421]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GK 682
           +G V  V +FGAFV     +DGLVH+SQL+   VA    VVK G  V V++L+ +   G+
Sbjct: 649 EGVVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVADPKAVVKVGQIVRVRVLEVNTALGR 708

Query: 683 IKLSMK 688
           I LSM+
Sbjct: 709 IGLSMR 714


>gi|330964802|gb|EGH65062.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 563

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 178 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 232

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 233 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 262



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++    V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 277 PESTRVT-ALVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 336 DIDEERRRISLGIKQCKSN 354


>gi|254705632|ref|ZP_05167460.1| hypothetical protein BpinM_01111 [Brucella pinnipedialis
           M163/99/10]
          Length = 442

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 327 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 386

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 387 KRIGLTMR 394


>gi|253681324|ref|ZP_04862122.1| RNA binding S1 domain protein [Clostridium botulinum D str. 1873]
 gi|253562562|gb|EES92013.1| RNA binding S1 domain protein [Clostridium botulinum D str. 1873]
          Length = 136

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  DD G
Sbjct: 8   ILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISVDDGG 66

Query: 682 KIKLSMK--VVDQNTGKPI 698
           ++ LS+K  +  + + KP+
Sbjct: 67  RLSLSIKQAMPSRKSSKPV 85


>gi|229032136|ref|ZP_04188113.1| Ribonuclease PH [Bacillus cereus AH1271]
 gi|228729192|gb|EEL80191.1| Ribonuclease PH [Bacillus cereus AH1271]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVQEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|229171090|ref|ZP_04298688.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus MM3]
 gi|228612420|gb|EEK69644.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus MM3]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDIVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|227498498|ref|ZP_03928644.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Acidaminococcus
           sp. D21]
 gi|226903956|gb|EEH89874.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Acidaminococcus
           sp. D21]
          Length = 680

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G +  ++DFG FV       GLVHIS++S +R  K +D+ K GD V V +   D ++G+
Sbjct: 492 EGTIRSIVDFGMFVEIAPFVQGLVHISEISWDRSVKPADLYKVGDKVEVYIKGLDAEKGR 551

Query: 683 IKLSMKVVDQN 693
           I LS+K + ++
Sbjct: 552 ISLSVKALQED 562



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G V++ + FGA V      +G++HIS++S +R+ K  DV++ G  V VK+L  D
Sbjct: 573 VGDIVTGTVLRFLPFGAIVKLNDKNEGMIHISEISEQRIEKPEDVLEVGQEVKVKVLRVD 632

Query: 679 -DRGKIKLSMKVVDQNTGK 696
            +  KI LS+    ++  K
Sbjct: 633 TEHKKIALSITKAKEDAEK 651


>gi|313884458|ref|ZP_07818219.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620242|gb|EFR31670.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 167

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 33/56 (58%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +FGAFV       GLVHISQLS   V   +D +K GD V VK++     GKI LSM
Sbjct: 18  NFGAFVSLSDNESGLVHISQLSNSFVKDINDFIKVGDEVEVKVIKIMPDGKINLSM 73


>gi|325116055|emb|CBZ51609.1| putative 30S ribosomal protein S1 [Neospora caninum Liverpool]
          Length = 1526

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            RE +R +    + +++ +G+VV +  FG  V F   R GL+H+S++S  RV +  DV+  
Sbjct: 1258 REQMRRV----KPDQVVEGEVVSIHPFGVMVQFGECR-GLLHVSEVSAARVERLEDVLPL 1312

Query: 667  GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            G  V   +L +D   GKI L+ K++++  G+
Sbjct: 1313 GSRVRALVLHYDKPTGKIALTTKLLERYPGE 1343


>gi|312143877|ref|YP_003995323.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium sp.
           'sapolanicus']
 gi|311904528|gb|ADQ14969.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium sp.
           'sapolanicus']
          Length = 768

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G++ K++DFGAF+      +GL+HISQLS   V    +VV  GD    K+++ D +
Sbjct: 645 EVVEGKITKIVDFGAFMEVEKGIEGLIHISQLSHRHVKTADEVVSVGDVKEAKIINIDAE 704

Query: 680 RGKIKLSMKVVDQ 692
           + ++ LS+K +++
Sbjct: 705 QERVGLSLKELEE 717


>gi|306841536|ref|ZP_07474234.1| RNA-binding S1 domain-containing protein [Brucella sp. BO2]
 gi|306288373|gb|EFM59732.1| RNA-binding S1 domain-containing protein [Brucella sp. BO2]
          Length = 767

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|154359354|gb|ABS79699.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359356|gb|ABS79700.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 186

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 110 IGSVVLGVVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 168

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 169 RDRGRVSLSTKKLEPTPG 186


>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 246

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 22/223 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R + A VG++    GS+LF  G+TQ + VV  G  E       L    +
Sbjct: 11  LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVV-YGPHEVHNKAHQLH--DK 67

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRRE------IGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y+    +TGE  R G   RR       IG    A    H +LP++      + I
Sbjct: 68  ALVRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTH-LLPRS-----QIDI 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ ++DG +  A +  +S+AL DAG+P+   V   A G +        L D++  ED 
Sbjct: 122 YVQVLQADGGTRAACINAASMALADAGIPMRDLVVSCAAGYLNSTP----LLDLNYQEDS 177

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAK 525
            G  D  V        ++ +QMD K+     E ++ +A + AK
Sbjct: 178 GGGPDLVVGYFPKLEKLSLLQMDSKVSIETFEKVLELATEGAK 220


>gi|30264550|ref|NP_846927.1| ribonuclease PH [Bacillus anthracis str. Ames]
 gi|47530015|ref|YP_021364.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187372|ref|YP_030624.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49481507|ref|YP_038534.1| ribonuclease PH [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141017|ref|YP_085813.1| ribonuclease PH [Bacillus cereus E33L]
 gi|162382773|ref|YP_896797.2| ribonuclease PH [Bacillus thuringiensis str. Al Hakam]
 gi|165871495|ref|ZP_02216142.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167635642|ref|ZP_02393954.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|167641666|ref|ZP_02399911.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|170688310|ref|ZP_02879520.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|170708334|ref|ZP_02898778.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|177653076|ref|ZP_02935363.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190566932|ref|ZP_03019848.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|196034453|ref|ZP_03101862.1| ribonuclease PH [Bacillus cereus W]
 gi|196039169|ref|ZP_03106475.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|196044912|ref|ZP_03112146.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|218905683|ref|YP_002453517.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225866464|ref|YP_002751842.1| ribonuclease PH [Bacillus cereus 03BB102]
 gi|227817261|ref|YP_002817270.1| ribonuclease PH [Bacillus anthracis str. CDC 684]
 gi|228929528|ref|ZP_04092547.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935800|ref|ZP_04098612.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948205|ref|ZP_04110489.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229093577|ref|ZP_04224678.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|229124021|ref|ZP_04253213.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|229186723|ref|ZP_04313881.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|229601018|ref|YP_002868764.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|254687030|ref|ZP_05150888.1| ribonuclease PH [Bacillus anthracis str. CNEVA-9066]
 gi|254724592|ref|ZP_05186375.1| ribonuclease PH [Bacillus anthracis str. A1055]
 gi|254736584|ref|ZP_05194290.1| ribonuclease PH [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741622|ref|ZP_05199309.1| ribonuclease PH [Bacillus anthracis str. Kruger B]
 gi|254754780|ref|ZP_05206815.1| ribonuclease PH [Bacillus anthracis str. Vollum]
 gi|254757612|ref|ZP_05209639.1| ribonuclease PH [Bacillus anthracis str. Australia 94]
 gi|301055992|ref|YP_003794203.1| ribonuclease PH [Bacillus anthracis CI]
 gi|61215848|sp|Q633V4|RNPH_BACCZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215928|sp|Q6HD42|RNPH_BACHK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216034|sp|Q81LA9|RNPH_BACAN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736884|sp|B7JQ74|RNPH_BACC0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808577|sp|C3PA74|RNPH_BACAA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808578|sp|C3L7T5|RNPH_BACAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808579|sp|C1ETS9|RNPH_BACC3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30259208|gb|AAP28413.1| tRNA nucleotidyltransferase [Bacillus anthracis str. Ames]
 gi|47505163|gb|AAT33839.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181299|gb|AAT56675.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49333063|gb|AAT63709.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974486|gb|AAU16036.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           cereus E33L]
 gi|164712792|gb|EDR18322.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167510373|gb|EDR85774.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|167529062|gb|EDR91817.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|170126709|gb|EDS95592.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|170667816|gb|EDT18569.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|172081600|gb|EDT66671.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190561923|gb|EDV15892.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|195992995|gb|EDX56954.1| ribonuclease PH [Bacillus cereus W]
 gi|196024400|gb|EDX63073.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|196029796|gb|EDX68397.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|218536266|gb|ACK88664.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225790478|gb|ACO30695.1| tRNA nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|227004760|gb|ACP14503.1| tRNA nucleotidyltransferase [Bacillus anthracis str. CDC 684]
 gi|228596736|gb|EEK54398.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|228659323|gb|EEL14971.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|228689786|gb|EEL43592.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|228811563|gb|EEM57900.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823857|gb|EEM69677.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830107|gb|EEM75725.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229265426|gb|ACQ47063.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|300378161|gb|ADK07065.1| ribonuclease PH [Bacillus cereus biovar anthracis str. CI]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 242

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I    G      GS L   G+T+ +      T   EQ V        
Sbjct: 5   TRADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMC-----TASAEQGVPRFKKDSG 59

Query: 372 NDFMM-HYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLR 424
             ++   Y  LP AT E  RM   S R    G      RL  R++   +  T     T+ 
Sbjct: 60  EGWLTAEYAMLPAATHE--RMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTIN 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           I  ++ ++DG +  A++ G+ +AL DA           G P+  P+A +++G++   D  
Sbjct: 118 IDCDVLQADGGTRTASITGAYIALADAIAYLTAQGVVPGNPLLPPIAAVSVGII---DGH 174

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           + L D+  +ED    +D  V  T  G
Sbjct: 175 VCL-DLPYEEDSRADVDLNVIMTQEG 199


>gi|228898984|ref|ZP_04063261.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 4222]
 gi|228860658|gb|EEN05041.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 4222]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|228919179|ref|ZP_04082553.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228840490|gb|EEM85757.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|21910164|ref|NP_664432.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS315]
 gi|28896137|ref|NP_802487.1| 30S ribosomal protein S1 [Streptococcus pyogenes SSI-1]
 gi|21904357|gb|AAM79235.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes MGAS315]
 gi|28811387|dbj|BAC64320.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes SSI-1]
          Length = 401

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---D 678
           + + +V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G  V VK+L+    D
Sbjct: 281 VVESKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNAAD 340

Query: 679 DRGKIKLSMKVVDQ 692
           +R  + LS+K +++
Sbjct: 341 ER--VSLSIKALEE 352



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           +  G V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  
Sbjct: 196 VVTGTVARLTSFGAFIDLGGV-DGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEA 254

Query: 681 GKIKLSMK 688
           G++ LS+K
Sbjct: 255 GRVSLSLK 262


>gi|313847991|emb|CBY16988.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|328914660|gb|AEB55493.1| ribosomal protein S1 [Chlamydophila psittaci 6BC]
          Length = 581

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD+V  K++  D D 
Sbjct: 481 VISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDH 540

Query: 681 GKIKLSMK 688
            K+ LS+K
Sbjct: 541 KKVSLSVK 548



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 370 ISLGLKQTEHN 380



 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAE---IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+NID    V ++   L E   I    E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINIDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDI 298


>gi|261313042|ref|ZP_05952239.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261302068|gb|EEY05565.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M163/99/10]
          Length = 441

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 326 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 385

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 386 KRIGLTMR 393


>gi|229827331|ref|ZP_04453400.1| hypothetical protein GCWU000182_02719 [Abiotrophia defectiva ATCC
           49176]
 gi|229788269|gb|EEP24383.1| hypothetical protein GCWU000182_02719 [Abiotrophia defectiva ATCC
           49176]
          Length = 716

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           + KG V  V+DFGAFV     +DGLVHIS+LS ++  K   +VV  GD V VK++  D  
Sbjct: 644 VMKGTVRNVIDFGAFVDIGVHQDGLVHISELSDKKFVKHPLEVVSVGDIVDVKVIGVDIP 703

Query: 680 RGKIKLSMK 688
           + +I LS+K
Sbjct: 704 KKRISLSIK 712


>gi|167623971|ref|YP_001674265.1| 30S ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
 gi|167353993|gb|ABZ76606.1| ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
          Length = 555

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++    V       KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQEGQSV-------KGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|104780673|ref|YP_607171.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
 gi|95109660|emb|CAK14361.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
          Length = 558

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 176 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 230

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 231 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 260



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PESTRVM-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCKSN 352


>gi|15644433|ref|NP_229485.1| hypothetical protein TM1685 [Thermotoga maritima MSB8]
 gi|148270115|ref|YP_001244575.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|4982261|gb|AAD36752.1|AE001809_4 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|147735659|gb|ABQ46999.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
          Length = 124

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ KG+V K++ +GAFV   G   G +HIS++S   V +  D + EG  +  K++  
Sbjct: 2   KVGELVKGKVSKIVKYGAFVDIEGGERGFIHISKISKNYVKRIEDYLHEGQEISAKVIGR 61

Query: 678 DDRGKIKLSMKVVDQNTGK 696
              G  +LS+K +++ T K
Sbjct: 62  ARNGGWELSLKDLEEETPK 80


>gi|319786987|ref|YP_004146462.1| ribosomal protein S1 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465499|gb|ADV27231.1| ribosomal protein S1 [Pseudoxanthomonas suwonensis 11-1]
          Length = 562

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E  + +  + E  K+ KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 166 NVVVSRRAVVESEHSEEREQLMEKLVEGAKL-KGVVKNLTDYGAFVDLGGI-DGLLHITD 223

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S+VV  GD + V++L FD +R ++ L +K
Sbjct: 224 MAWKRVRHPSEVVNVGDELEVRVLKFDRERNRVSLGLK 261



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 335 DVDEERRRISLGMKQVAAN 353



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           GQ+  + DFG F+   G  DGLVH+S +S     +  DV+   K+GDT+   +L  D +R
Sbjct: 370 GQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVLRNFKKGDTLDAVVLAVDPER 427

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++Q+
Sbjct: 428 ERISLGLKQMEQD 440


>gi|313893100|ref|ZP_07826677.1| Tex-like protein N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442453|gb|EFR60868.1| Tex-like protein N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 759

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  
Sbjct: 636 RKHVVSLEDI-QVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAV 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           GD +  +++  D  R +I LS+K +
Sbjct: 694 GDIIEAQIISVDVKRNRIGLSVKAL 718


>gi|228912986|ref|ZP_04076629.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228846661|gb|EEM91670.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAF+     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFIDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|229117982|ref|ZP_04247342.1| Ribonuclease PH [Bacillus cereus Rock1-3]
 gi|228665431|gb|EEL20913.1| Ribonuclease PH [Bacillus cereus Rock1-3]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|322372624|ref|ZP_08047160.1| S1 RNA binding domain protein [Streptococcus sp. C150]
 gi|321277666|gb|EFX54735.1| S1 RNA binding domain protein [Streptococcus sp. C150]
          Length = 710

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKNFVNHPSQVVSVGDLVTVWVSKID 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|291614518|ref|YP_003524675.1| ribosomal protein S1 [Sideroxydans lithotrophicus ES-1]
 gi|291584630|gb|ADE12288.1| ribosomal protein S1 [Sideroxydans lithotrophicus ES-1]
          Length = 568

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++
Sbjct: 199 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLTVGDEVEAKILKFDQEK 257

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 258 NRVSLGIK 265



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 280 PQGTRLF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVALGDEVEVMIL 338

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 339 EIDEQRRRISLGMKQCKSN 357


>gi|229105117|ref|ZP_04235768.1| Ribonuclease PH [Bacillus cereus Rock3-28]
 gi|228678298|gb|EEL32524.1| Ribonuclease PH [Bacillus cereus Rock3-28]
          Length = 258

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGRGKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V  G+  ++L
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIV--GEQGVVL 187

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 188 -DLNYAEDSKADVDMNVIMTGKG 209


>gi|212635293|ref|YP_002311818.1| 30S ribosomal protein S1 [Shewanella piezotolerans WP3]
 gi|212556777|gb|ACJ29231.1| Ribosomal protein S1 [Shewanella piezotolerans WP3]
          Length = 555

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++    V       KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQEGQSV-------KGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|206972207|ref|ZP_03233154.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|229176835|ref|ZP_04304236.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 172560W]
 gi|206732781|gb|EDZ49956.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|228606643|gb|EEK64063.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 172560W]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|158337244|ref|YP_001518419.1| S1 RNA-binding domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158307485|gb|ABW29102.1| S1 RNA binding domain protein [Acaryochloris marina MBIC11017]
          Length = 720

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E I  +TD+ PE+    +G V  V +FGAFV     +DGLVHISQ++ + V     +VK
Sbjct: 633 KEGITELTDLKPEME--LEGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVK 690

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMK 688
            G  V V++L+ + + K I LSM+
Sbjct: 691 VGQVVKVRVLEVNQKLKRIGLSMR 714


>gi|154498831|ref|ZP_02037209.1| hypothetical protein BACCAP_02822 [Bacteroides capillosus ATCC
           29799]
 gi|150272221|gb|EDM99425.1| hypothetical protein BACCAP_02822 [Bacteroides capillosus ATCC
           29799]
          Length = 720

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           G V  V+DFG FV     +DGLVHISQL    RV   S+V   GD V V +L+ D++ K 
Sbjct: 652 GTVRNVIDFGVFVDIGVHQDGLVHISQLGAGRRVKHPSEVCAVGDIVTVWVLEVDEKKKR 711

Query: 683 IKLSMK 688
           I L+MK
Sbjct: 712 ISLTMK 717


>gi|90021782|ref|YP_527609.1| 30S ribosomal protein S1 [Saccharophagus degradans 2-40]
 gi|89951382|gb|ABD81397.1| SSU ribosomal protein S1P [Saccharophagus degradans 2-40]
          Length = 560

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVAVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+ K ++  + D+G F       +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PEGAKV-KARITNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   +N
Sbjct: 334 DIDEERRRISLGIKQCQEN 352



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S     + +    K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNEAGEEAVRKFKKGDEIETVVLAIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K +D++
Sbjct: 429 ISLGVKQLDED 439


>gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
 gi|123652029|sp|Q4K3R6|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|68347641|gb|AAY95247.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
          Length = 240

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL+DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSTG 197


>gi|25028957|ref|NP_739011.1| ribonuclease PH [Corynebacterium efficiens YS-314]
 gi|259508022|ref|ZP_05750922.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
 gi|61216064|sp|Q8FMU8|RNPH_COREF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23494244|dbj|BAC19211.1| putative ribonuclease [Corynebacterium efficiens YS-314]
 gi|259164363|gb|EEW48917.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
          Length = 245

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R +    G      GS L   G+T+ +   ++         DS  G   
Sbjct: 8   TRADGRAQDQMRTVKITRGFTTNPAGSVLIEFGNTRVMCTASVELGVPRFKRDSGEGW-- 65

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R  + + +  G      RL  R++   +  +     T+ I  
Sbjct: 66  --LTAEYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDC 123

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA           G P+  PVA +++GL+ DG   +  
Sbjct: 124 DVLQADGGTRTAAITGAYVALADAIRVLKEQGVVPGDPLLPPVAAVSVGLI-DGQPCL-- 180

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  T+SG
Sbjct: 181 -DLPYEEDVRADVDMNVVMTESG 202


>gi|320582873|gb|EFW97090.1| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Pichia angusta DL-1]
          Length = 1659

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 601  AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVA 658
            +EI++   +++    + + ++IY+G V +V +FG FV+  G  +  GL H SQ++  +V 
Sbjct: 1200 SEIDSDSSLLKRFDQIQK-DEIYEGSVRRVTNFGVFVNLDGTLNVSGLCHHSQIADNQVT 1258

Query: 659  KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                +  EGD V VK+LD D ++ ++ L MK
Sbjct: 1259 NIESLFSEGDRVKVKILDVDHEKKQLSLGMK 1289


>gi|254784432|ref|YP_003071860.1| ribonuclease PH [Teredinibacter turnerae T7901]
 gi|259494129|sp|C5BLF9|RNPH_TERTT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237687110|gb|ACR14374.1| tRNA nucleotidyltransferase [Teredinibacter turnerae T7901]
          Length = 239

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 28/234 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +RDIS      +   GS L   GDT+ I   T+    +E     L G  +
Sbjct: 2   LRPSGRAANQLRDISITRHYTRHAEGSVLVCFGDTKVICTATV----EEGVPRFLKGEGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +TG  SRMG  + R    GR      L  R++   +  T    +++ I
Sbjct: 58  GWVTAEYGMLPRSTG--SRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITI 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+ + G+  +
Sbjct: 116 DCDVIQADGGTRTASITGACVALVDALRFMQRSKMIQTDPLRHLVASVSVGMYQ-GEAVL 174

Query: 475 ILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRG 527
              D+   ED     D  +  T+  G+  +Q   +    SE+  +     AK G
Sbjct: 175 ---DLDYPEDSNADTDMNMVMTEQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEG 225


>gi|228963338|ref|ZP_04124503.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228796366|gb|EEM43809.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 722

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|218885413|ref|YP_002434734.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756367|gb|ACL07266.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 564

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           + D  + ++I  G+V ++  FGAF+      +GLVH+S++S T R+ K  + V  G+TV 
Sbjct: 326 VADRLDADQILTGKVTRLAPFGAFIEVLPGVEGLVHLSEMSWTRRINKPEEAVTPGETVS 385

Query: 672 VKLLDFDD-RGKIKLSMK 688
           V++ + D  R ++ LS++
Sbjct: 386 VRIKELDPARKRLSLSLR 403



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 607 REMIRSITDVPEVNK---IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           RE   S++ + E  K   + +G V ++  FGAFV      +G+VH+S+LS  RV +  + 
Sbjct: 220 REQAESLSALMENVKEGDVLEGTVARLAPFGAFVEIAPGLEGMVHVSELSWSRVQQADEA 279

Query: 664 VKEGDTVWVKLL 675
           V  GD V VK+L
Sbjct: 280 VSVGDKVRVKVL 291


>gi|197123834|ref|YP_002135785.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|220918599|ref|YP_002493903.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
 gi|226736882|sp|B4UBI2|RNPH_ANASK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808575|sp|B8J5H5|RNPH_ANAD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196173683|gb|ACG74656.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|219956453|gb|ACL66837.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 239

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR    +R I  +  + +   GS L   GDT  +   ++    DE+    + GT  
Sbjct: 1   MRKNGRGELDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASV----DEKVPPHVYGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +  A   ++ G      RL  RA+   +   A  P T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GV---------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+ A  G+         P+ + VA +++G+V       + 
Sbjct: 117 DVIQADGGTRTAAITGAYVALVQAVRGIQKRRQLAQDPVKRSVAAVSVGIVAGQ----VH 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  DED    +D  V  T  G
Sbjct: 173 LDLDYDEDSTAEVDMNVVATGDG 195


>gi|94971687|ref|YP_593735.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553737|gb|ABF43661.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
          Length = 609

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++   + E E   +  +++  + E + +  G V  + D+GAFV   G  DGL+HI+
Sbjct: 216 GNIVVSRKQILEEEQNDKKSKTLEHLNE-DAVLTGTVKNLTDYGAFVDLGGI-DGLLHIT 273

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S  R+    D+V+ GD + VK+L FD D+ ++ L  K
Sbjct: 274 DMSWGRLTHPRDLVQVGDQIQVKVLKFDRDKQRVSLGFK 312



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + +G+V  + DFGAF+      DGLVH+S LS T+RV   S+V+K+GD V   +L  
Sbjct: 415 VGGVVEGKVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKGDKVKAVVLAI 474

Query: 678 D-DRGKIKLSMK 688
           + D  ++ L +K
Sbjct: 475 EPDNRRLSLGVK 486



 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G+V+ V D+GAF+      +GLVH+S+++ ++R+   S +V  GD V   +L+ + +  +
Sbjct: 334 GRVISVTDYGAFIELEQGIEGLVHVSEMTWSKRMKHPSKIVNVGDQVDAVVLNVNPQERR 393

Query: 683 IKLSMKVVDQN 693
           I L +K ++ N
Sbjct: 394 ISLGLKQLETN 404


>gi|160872757|ref|ZP_02062889.1| ribosomal protein S1 [Rickettsiella grylli]
 gi|159121556|gb|EDP46894.1| ribosomal protein S1 [Rickettsiella grylli]
          Length = 522

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 8/98 (8%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E +A RE +  +T++ E  ++ KG V  + D+GAF+   G  DGL+H++ +S +RV + 
Sbjct: 176 SEGQAGREQL--LTELEE-GQVIKGIVKNLADYGAFIDLGGI-DGLLHVTDISWKRVKQP 231

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           S+V+  GD + V +L  + +RG++ L +K   Q  G P
Sbjct: 232 SEVLNIGDEIEVVVLKIERERGRVSLGLK---QLVGDP 266



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+V  V D+G FV      +GLVH+S++  T +    + +V+ G  + V +LD D DR 
Sbjct: 281 KGKVTNVTDYGCFVEIEEGVEGLVHVSEMDWTNKNINPNKIVQAGMEIEVIVLDIDSDRR 340

Query: 682 KIKLSMKVVDQN 693
           +I L +K    N
Sbjct: 341 RISLGIKQCKSN 352



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHIS----QLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           G++  + DFG F+   G  DGLVH+S     LS E   +     K+GD +   +L  D +
Sbjct: 369 GKIKSITDFGLFIGLPGNIDGLVHLSDIAWNLSGEEAVRK---YKKGDELETIILSIDPE 425

Query: 680 RGKIKLSMKVVDQNTGKPI 698
           R +I L +K +D  +  P 
Sbjct: 426 RERISLGIKQLDTESSHPF 444


>gi|315172638|gb|EFU16655.1| S1 RNA binding domain protein [Enterococcus faecalis TX1346]
          Length = 159

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKIGLSIR 74


>gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 248

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR S  +R +  + G  +   GS+L   G+T  +   ++    +E+    L G+ R 
Sbjct: 3   RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTASV----EEKVPQFLRGSGRG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +T      E+SR G P+ R     RL  R++   +  +     T+ I  
Sbjct: 59  WVSAEYAMLPRSTHQRTQREISR-GKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A +  S +AL+DA            +P+   VA ++ G+V  G+   ++
Sbjct: 118 DVLQADGGTRTAAITASFVALVDACRWLMSNGLVGSMPVVHQVAAVSAGIVA-GE---VM 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V   + G
Sbjct: 174 LDLCYEEDSSAQVDCNVVMAEDG 196


>gi|260886704|ref|ZP_05897967.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|330839468|ref|YP_004414048.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
 gi|260863556|gb|EEX78056.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|329747232|gb|AEC00589.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
          Length = 248

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+ GR ++ +R +    G  +   GS L   G T+ I   ++    +++    L GT   
Sbjct: 3   RIRGRAADALRPLKMMRGFQKGPAGSVLIEMGRTRVICAASV----EDRVPYFLRGTGTG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +   A   R+ G      RL  R++  V+   A    T+ +  +
Sbjct: 59  WIKAEYALLPSATSTRTPREACQGRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV---------PISKPVAGIAMGLVKDGDDFIILSDI 479
           + E+DG +  A + G+ +AL++A           P+   +A +++GL +DG+  +   D+
Sbjct: 119 VIEADGGTRTAAITGAFVALVEACASFYEKGKTFPVKDFLAAVSVGLAQDGEPIL---DL 175

Query: 480 SGDEDHLGHMDFKVAGTDS 498
             +ED    +D  V  T +
Sbjct: 176 CYEEDSTALVDMNVVMTGA 194


>gi|229188513|ref|ZP_04315557.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 10876]
 gi|228594976|gb|EEK52751.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 10876]
          Length = 722

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|157961894|ref|YP_001501928.1| 30S ribosomal protein S1 [Shewanella pealeana ATCC 700345]
 gi|157846894|gb|ABV87393.1| ribosomal protein S1 [Shewanella pealeana ATCC 700345]
          Length = 555

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++    V       KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQEGQSV-------KGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|30022573|ref|NP_834204.1| ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42783632|ref|NP_980879.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206969838|ref|ZP_03230792.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206976011|ref|ZP_03236921.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217961976|ref|YP_002340546.1| ribonuclease PH [Bacillus cereus AH187]
 gi|222097944|ref|YP_002532001.1| ribonuclease ph [Bacillus cereus Q1]
 gi|228910315|ref|ZP_04074132.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|228960757|ref|ZP_04122396.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228987732|ref|ZP_04147843.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229048198|ref|ZP_04193767.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|229071999|ref|ZP_04205209.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|229081747|ref|ZP_04214240.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|229111953|ref|ZP_04241497.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|229129777|ref|ZP_04258744.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|229141223|ref|ZP_04269762.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|229147051|ref|ZP_04275411.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|229152684|ref|ZP_04280872.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|229158099|ref|ZP_04286169.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|229180760|ref|ZP_04308098.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|229198610|ref|ZP_04325312.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|296504969|ref|YP_003666669.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|61215974|sp|Q72ZT1|RNPH_BACC1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216033|sp|Q817P3|RNPH_BACCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736887|sp|B7HQP4|RNPH_BACC7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808580|sp|B9IZ73|RNPH_BACCQ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29898131|gb|AAP11405.1| Ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42739561|gb|AAS43487.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206735526|gb|EDZ52694.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206745763|gb|EDZ57160.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217063584|gb|ACJ77834.1| ribonuclease PH [Bacillus cereus AH187]
 gi|221242002|gb|ACM14712.1| ribonuclease PH [Bacillus cereus Q1]
 gi|228584892|gb|EEK43008.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|228602738|gb|EEK60221.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|228625418|gb|EEK82175.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|228630830|gb|EEK87471.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|228636439|gb|EEK92909.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|228642264|gb|EEK98556.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|228653693|gb|EEL09564.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|228671517|gb|EEL26817.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|228701592|gb|EEL54085.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|228711158|gb|EEL63123.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|228723185|gb|EEL74561.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|228772006|gb|EEM20461.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228798973|gb|EEM45948.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228849375|gb|EEM94212.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|296326021|gb|ADH08949.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|324328384|gb|ADY23644.1| ribonuclease PH [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 245

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|269303190|gb|ACZ33290.1| ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
          Length = 580

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 11/99 (11%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G  +++S+   EIEA   M  + T       +  G V K+  FGAFV      +GL+H+S
Sbjct: 460 GVKQLSSNPWNEIEA---MFPAGT-------VISGVVTKITAFGAFVELQNGIEGLIHVS 509

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +LS +  AK  D++  G+ V  K++  D D  K+ LS+K
Sbjct: 510 ELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVK 548



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+H+S++S  + +   S+VV +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 370 ISLGLKQTEHN 380



 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 6/97 (6%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I    E+I  I+    + +  KG V  + DFG F+   G  DGL+HI+ ++ +R+   S+
Sbjct: 207 ISKKAELIEQIS----IGEYRKGVVKNITDFGVFLDLDGI-DGLLHITDMTWKRIRHPSE 261

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 262 MVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G++V   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K +  N    I
Sbjct: 457 ITLGVKQLSSNPWNEI 472


>gi|229041141|ref|ZP_04189900.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH676]
 gi|228727203|gb|EEL78401.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH676]
          Length = 722

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|228956677|ref|ZP_04118468.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229107916|ref|ZP_04237547.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-15]
 gi|229125749|ref|ZP_04254778.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-Cer4]
 gi|296501067|ref|YP_003662767.1| transcription accessory protein [Bacillus thuringiensis BMB171]
 gi|228657722|gb|EEL13531.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-Cer4]
 gi|228675539|gb|EEL30752.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-15]
 gi|228803015|gb|EEM49842.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296322119|gb|ADH05047.1| transcription accessory protein [Bacillus thuringiensis BMB171]
          Length = 722

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|218235768|ref|YP_002365082.1| S1 RNA binding domain protein [Bacillus cereus B4264]
 gi|218163725|gb|ACK63717.1| S1 RNA binding domain protein [Bacillus cereus B4264]
          Length = 722

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|126731729|ref|ZP_01747534.1| S1 RNA binding domain protein [Sagittula stellata E-37]
 gi|126707895|gb|EBA06956.1| S1 RNA binding domain protein [Sagittula stellata E-37]
          Length = 788

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 650 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDIPR 709

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 710 KRIGLTMR 717


>gi|30018504|ref|NP_830135.1| transcription accessory protein [Bacillus cereus ATCC 14579]
 gi|29894044|gb|AAP07336.1| Transcription accessory protein (S1 RNA binding domain) [Bacillus
           cereus ATCC 14579]
          Length = 724

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 656 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 715

Query: 683 IKLSM 687
           + LSM
Sbjct: 716 VALSM 720


>gi|330953535|gb|EGH53795.1| 30S ribosomal protein S1 [Pseudomonas syringae Cit 7]
          Length = 494

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 109 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 163

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 164 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 193



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 208 PESTRVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 266

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 267 DIDEERRRISLGIKQCKSN 285


>gi|317486319|ref|ZP_07945150.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
 gi|316922430|gb|EFV43685.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
          Length = 570

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE ++ + G+V  ++D+GAFV      +GLVHIS++S T ++   S +V++GD V V +L
Sbjct: 287 PEASR-HNGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRQGDEVEVVIL 345

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D ++ +I L MK +  N
Sbjct: 346 GVDPEKKRISLGMKQIKPN 364



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 6/80 (7%)

Query: 614 TDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           T+VP    V  + KG +  + DFG FV      +GLVH+S+LS ++V   +++ KEG+ +
Sbjct: 454 TNVPTAYPVGGLVKGIITNITDFGLFVEVEEGIEGLVHVSELSNKKVKTPAELYKEGEEI 513

Query: 671 WVKLLDF--DDRGKIKLSMK 688
             K++    +DR ++ LS+K
Sbjct: 514 QAKIIHVSAEDR-RLGLSIK 532



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G+   + ++G FV   G  DGL+HI+ +S +R+    ++V  G  + +K+L FD D
Sbjct: 205 QVVTGKAKNITEYGVFVDLGGL-DGLLHITDMSWKRIRHPREMVTLGQDLELKVLSFDKD 263

Query: 680 RGKIKLSMK 688
             K+ L +K
Sbjct: 264 NQKVSLGLK 272



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +G +  + +FG F+      DGL+H+S +S T+++   +++ K GDTV  K+L  D
Sbjct: 378 ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELFKVGDTVQAKVLTVD 435


>gi|228950775|ref|ZP_04112904.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229067998|ref|ZP_04201311.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus F65185]
 gi|229077597|ref|ZP_04210237.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-2]
 gi|229148642|ref|ZP_04276896.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1550]
 gi|228634900|gb|EEK91475.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1550]
 gi|228705716|gb|EEL58062.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-2]
 gi|228715136|gb|EEL66999.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus F65185]
 gi|228808915|gb|EEM55405.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 722

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|227204349|dbj|BAH57026.1| AT5G30510 [Arabidopsis thaliana]
          Length = 378

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 263 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 321

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 322 RDRGRVSLSTKKLEPTPG 339


>gi|242280849|ref|YP_002992978.1| 30S ribosomal protein S1 [Desulfovibrio salexigens DSM 2638]
 gi|242123743|gb|ACS81439.1| ribosomal protein S1 [Desulfovibrio salexigens DSM 2638]
          Length = 581

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   EM   + +  E  +  KG+V  + ++G F+   G  DGL+HI+ +S +R+    ++
Sbjct: 188 EQRNEMRSQLLETLEEEQTVKGKVKNITEYGVFIDL-GGLDGLLHITDMSWKRIKHPKEM 246

Query: 664 VKEGDTVWVKLLDFDDRG-KIKLSMK 688
           V  GD + +K+L+FD  G K+ L +K
Sbjct: 247 VALGDELELKVLNFDKEGQKVSLGLK 272



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K Y G+V  + D+GAFV      +GLVHIS++S T ++   S +V+ GD V V +L
Sbjct: 287 PEGAK-YTGKVTNLADYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVRVGDEVDVVVL 345

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D D+ +I L MK V  N
Sbjct: 346 GVDPDKKRISLGMKQVKPN 364



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + DFG FV      +GLVH+S++S +++   S++ KEG T+  K++    D  +
Sbjct: 467 EGLVTNITDFGLFVEVEEGIEGLVHVSEISHKKIKNPSEMFKEGVTIQAKVIHVSADERR 526

Query: 683 IKLSMKVVDQNTGK 696
           + LS+K + ++T K
Sbjct: 527 LGLSIKQLKEDTEK 540



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +GQ+  + +FG F+      DGL+H+S +S T +V   S+V   GD+V  K+L  D
Sbjct: 378 ILEGQIKNITEFGVFIGIEDGIDGLIHVSDISWTRKVRHPSEVYAVGDSVQAKVLTVD 435


>gi|225873902|ref|YP_002755361.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
 gi|225793852|gb|ACO33942.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
          Length = 637

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ +S  R+    D+V  GD + VK+L F
Sbjct: 273 EEGSILTGTVKNLTDYGAFVDMGGI-DGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKF 331

Query: 678 D-DRGKIKLSMK 688
           D D+ ++ L  K
Sbjct: 332 DRDKQRVSLGFK 343



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +G+V  + DFGAF+      DGLVH+S LS T+RV   S+V+K+G+ V
Sbjct: 451 EGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKGEKV 498



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           +G+V+ V D+G+FV      +GLVH+S+++ ++R+   S ++K GD V   +L  +  DR
Sbjct: 364 RGRVLSVTDYGSFVELEQGIEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDR 423

Query: 681 GKIKLSMKVVDQN 693
            +I L MK +  N
Sbjct: 424 -RISLGMKQLQDN 435


>gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425]
 gi|254808586|sp|B8HPC6|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425]
          Length = 239

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 85/199 (42%), Gaps = 21/199 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR S  +R IS + G  +   GS L   G TQ +  VT+           L G  + 
Sbjct: 5   RPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTV----RPGVPKFLEGRGQG 60

Query: 373 DFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     M   S R     RL  R++   L        TL + +++ 
Sbjct: 61  WLTAEYRMLPAATPQRQEREMLKLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + GS +AL DA             PI   VA +++GL+ +G+ F+   D+
Sbjct: 121 QADAGTRTTAITGSFVALADAIDQLLQAGELQRSPIRNYVAAVSVGLL-EGEPFL---DL 176

Query: 480 SGDEDHLGHMDFKVAGTDS 498
           S  ED    +DF V  T+S
Sbjct: 177 SYQEDVAASVDFNVVMTES 195


>gi|218895367|ref|YP_002443778.1| S1 RNA binding domain protein [Bacillus cereus G9842]
 gi|218545174|gb|ACK97568.1| S1 RNA binding domain protein [Bacillus cereus G9842]
          Length = 722

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|163741546|ref|ZP_02148937.1| S1 RNA binding domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161385280|gb|EDQ09658.1| S1 RNA binding domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 788

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + +ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK 
Sbjct: 637 KDGVETITDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKT 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V V + + D  R +I L+MK
Sbjct: 696 GQVVKVTVTEVDVPRKRIALTMK 718


>gi|127512882|ref|YP_001094079.1| 30S ribosomal protein S1 [Shewanella loihica PV-4]
 gi|126638177|gb|ABO23820.1| SSU ribosomal protein S1P [Shewanella loihica PV-4]
          Length = 555

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PENTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|120598785|ref|YP_963359.1| 30S ribosomal protein S1 [Shewanella sp. W3-18-1]
 gi|146293138|ref|YP_001183562.1| 30S ribosomal protein S1 [Shewanella putrefaciens CN-32]
 gi|120558878|gb|ABM24805.1| SSU ribosomal protein S1P [Shewanella sp. W3-18-1]
 gi|145564828|gb|ABP75763.1| SSU ribosomal protein S1P [Shewanella putrefaciens CN-32]
 gi|319426350|gb|ADV54424.1| ribosomal protein S1 [Shewanella putrefaciens 200]
          Length = 555

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|294792890|ref|ZP_06758037.1| S1 RNA binding domain protein [Veillonella sp. 6_1_27]
 gi|294456789|gb|EFG25152.1| S1 RNA binding domain protein [Veillonella sp. 6_1_27]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  
Sbjct: 632 RKHVVSLEDI-KVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           GD +  +++  D  R +I LS+K +
Sbjct: 690 GDIIEAQIISVDVKRNRIGLSIKAL 714


>gi|307730700|ref|YP_003907924.1| ribonuclease PH [Burkholderia sp. CCGE1003]
 gi|307585235|gb|ADN58633.1| ribonuclease PH [Burkholderia sp. CCGE1003]
          Length = 246

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTDTTRRPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ETVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  DA           G PIS  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVSKLLAAGHIEGSPISDFVAAISVGIY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|257066240|ref|YP_003152496.1| RNA binding S1 domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798120|gb|ACV28775.1| RNA binding S1 domain protein [Anaerococcus prevotii DSM 20548]
          Length = 699

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+ +  I D+ E   I KG+V  + DFGAFV      DGLVH+S++S + +   ++V+ 
Sbjct: 612 TRKEVMGIDDLKE-GMILKGKVRNITDFGAFVDIGVGIDGLVHVSKISNKFIKNPNEVLT 670

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688
               V VK+++ D  + +I LSMK
Sbjct: 671 NSQVVEVKVIEIDRKKERIGLSMK 694


>gi|261377757|ref|ZP_05982330.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
 gi|269146043|gb|EEZ72461.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
          Length = 561

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDESRRRISLGMKQCQAN 353


>gi|157150717|ref|YP_001449921.1| hypothetical protein SGO_0605 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075511|gb|ABV10194.1| general stress protein GSP13 [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 128

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G +  +  +GAFV       GL+HIS++ T  +    D++  GDTV V++LDFD+   K
Sbjct: 8   RGTITGIQPYGAFVELESGITGLIHISEIKTGYIENIHDLLAIGDTVQVQVLDFDEYTKK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  ASLSMRTLEE 77


>gi|187918006|ref|YP_001883569.1| 30S ribosomal protein S1 [Borrelia hermsii DAH]
 gi|119860854|gb|AAX16649.1| SSU ribosomal protein S1P [Borrelia hermsii DAH]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTV 670
           S+    ++  I KG+VVK++ FGA V       G +HIS  S  RV K+  ++VK G  V
Sbjct: 266 SVESRYKIESIVKGKVVKILPFGAVVELDSEISGFLHISNFSWVRVIKSPQELVKVGQIV 325

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK+L+ D +  KI L +K V++N
Sbjct: 326 EVKILEIDKENQKISLGIKQVNEN 349


>gi|126174291|ref|YP_001050440.1| 30S ribosomal protein S1 [Shewanella baltica OS155]
 gi|153000799|ref|YP_001366480.1| 30S ribosomal protein S1 [Shewanella baltica OS185]
 gi|160875508|ref|YP_001554824.1| 30S ribosomal protein S1 [Shewanella baltica OS195]
 gi|217973242|ref|YP_002357993.1| 30S ribosomal protein S1 [Shewanella baltica OS223]
 gi|304408840|ref|ZP_07390461.1| ribosomal protein S1 [Shewanella baltica OS183]
 gi|307302843|ref|ZP_07582598.1| ribosomal protein S1 [Shewanella baltica BA175]
 gi|125997496|gb|ABN61571.1| SSU ribosomal protein S1P [Shewanella baltica OS155]
 gi|151365417|gb|ABS08417.1| ribosomal protein S1 [Shewanella baltica OS185]
 gi|160861030|gb|ABX49564.1| ribosomal protein S1 [Shewanella baltica OS195]
 gi|217498377|gb|ACK46570.1| ribosomal protein S1 [Shewanella baltica OS223]
 gi|304352661|gb|EFM17058.1| ribosomal protein S1 [Shewanella baltica OS183]
 gi|306913203|gb|EFN43625.1| ribosomal protein S1 [Shewanella baltica BA175]
 gi|315267695|gb|ADT94548.1| ribosomal protein S1 [Shewanella baltica OS678]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|2160696|gb|AAB58903.1| unknown [Chlamydia trachomatis]
          Length = 123

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  GD V  K++  D D  K+
Sbjct: 38  GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKV 97

Query: 684 KLSMK 688
            LS+K
Sbjct: 98  SLSIK 102


>gi|89898347|ref|YP_515457.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
 gi|89331719|dbj|BAE81312.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
          Length = 581

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD+V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSVK 548



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 370 ISLGLKQTEHN 380



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+NID    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINIDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGVVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K +  N    I
Sbjct: 457 ITLGVKQLSSNPWNEI 472


>gi|157375435|ref|YP_001474035.1| 30S ribosomal protein S1 [Shewanella sediminis HAW-EB3]
 gi|157317809|gb|ABV36907.1| ribosomal protein S1 [Shewanella sediminis HAW-EB3]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++    V       KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQEGQSV-------KGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGLK 347


>gi|119774871|ref|YP_927611.1| 30S ribosomal protein S1 [Shewanella amazonensis SB2B]
 gi|119767371|gb|ABL99941.1| SSU ribosomal protein S1P [Shewanella amazonensis SB2B]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|113970262|ref|YP_734055.1| 30S ribosomal protein S1 [Shewanella sp. MR-4]
 gi|114047549|ref|YP_738099.1| 30S ribosomal protein S1 [Shewanella sp. MR-7]
 gi|117920422|ref|YP_869614.1| 30S ribosomal protein S1 [Shewanella sp. ANA-3]
 gi|113884946|gb|ABI38998.1| SSU ribosomal protein S1P [Shewanella sp. MR-4]
 gi|113888991|gb|ABI43042.1| SSU ribosomal protein S1P [Shewanella sp. MR-7]
 gi|117612754|gb|ABK48208.1| SSU ribosomal protein S1P [Shewanella sp. ANA-3]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PENTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|90406780|ref|ZP_01214972.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
 gi|90312017|gb|EAS40110.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I + + AE E   E ++   DV       KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 173 IETENSAEREELLENLQEGQDV-------KGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 225 KRVKHPSEIVNVGDEITVKVLKYDRERTRVSLGLK 259



 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD   V +L
Sbjct: 274 PESTRLT-GKVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDMAEVMVL 332

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 333 DIDEERRRISLGLKQCKAN 351


>gi|55820741|ref|YP_139183.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55736726|gb|AAV60368.1| transcriptional regulator, putative [Streptococcus thermophilus LMG
           18311]
          Length = 710

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKID 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|325474458|gb|EGC77645.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola F0402]
          Length = 811

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I  G V K  DFGAF+      +GL HIS+ S  +++ K  D++K GD V   +L +
Sbjct: 527 VEDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKINKPEDILKPGDKVTCMILGY 586

Query: 678 D-DRGKIKLSMKVVDQN 693
           D   G++ L +K V  N
Sbjct: 587 DIQAGRVSLGLKQVTDN 603



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           KG V     FGAF+   G  DGL+HI+ +S   V +  D VK+G+ + +K++  D   K 
Sbjct: 447 KGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKR 505

Query: 683 IKLSMKVVDQN 693
           I LS+K   Q+
Sbjct: 506 INLSLKHFTQD 516


>gi|325144558|gb|EGC66857.1| ribosomal protein S1 [Neisseria meningitidis M01-240013]
 gi|325205925|gb|ADZ01378.1| ribosomal protein S1 [Neisseria meningitidis M04-240196]
          Length = 561

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDESRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|312278071|gb|ADQ62728.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative
           [Streptococcus thermophilus ND03]
          Length = 710

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKID 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|294054698|ref|YP_003548356.1| Tex-like protein protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614031|gb|ADE54186.1| Tex-like protein protein [Coraliomargarita akajimensis DSM 45221]
          Length = 758

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+SQL+ + V   + +VK GD V V + + D  R +I
Sbjct: 645 GIVTNVTAFGAFVDVGVHQDGLVHVSQLADKFVEDPNQIVKVGDKVQVTVTELDLQRNRI 704

Query: 684 KLSMKVVDQNTGK 696
            LSM+   +  GK
Sbjct: 705 SLSMRARPEIGGK 717


>gi|225552212|ref|ZP_03773152.1| 30S ribosomal protein S1 [Borrelia sp. SV1]
 gi|225371210|gb|EEH00640.1| 30S ribosomal protein S1 [Borrelia sp. SV1]
          Length = 430

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K V++N
Sbjct: 330 IDKENQKISLGIKQVNEN 347



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|242216327|ref|XP_002473972.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726916|gb|EED80851.1| predicted protein [Postia placenta Mad-698-R]
          Length = 766

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLST-ERVAKTSDVVKE 666
           R + + P + KIY G+V  + +FGAFV      G  +G+VH+S +    R    +D++  
Sbjct: 198 RPLDERPVLFKIYNGRVNGMKEFGAFVQLEGVVGRVEGMVHVSNIQQGARTNSAADLLTR 257

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           G +V VK++      ++ LSMK VDQ TG+ + 
Sbjct: 258 GQSVKVKVMSVAGT-RVGLSMKDVDQATGRDLT 289


>gi|15618235|ref|NP_224520.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae CWL029]
 gi|15835850|ref|NP_300374.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae J138]
 gi|16752723|ref|NP_444990.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|33241660|ref|NP_876601.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
 gi|6707741|sp|Q9Z8M3|RS1_CHLPN RecName: Full=30S ribosomal protein S1
 gi|4376592|gb|AAD18464.1| S1 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
 gi|7189364|gb|AAF38281.1| ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|8978689|dbj|BAA98525.1| S1 ribosomal protein [Chlamydophila pneumoniae J138]
 gi|33236169|gb|AAP98258.1| ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
          Length = 580

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 11/99 (11%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G  +++S+   EIEA   M  + T       +  G V K+  FGAFV      +GL+H+S
Sbjct: 460 GVKQLSSNPWNEIEA---MFPAGT-------VISGVVTKITAFGAFVELQNGIEGLIHVS 509

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +LS +  AK  D++  G+ V  K++  D D  K+ LS+K
Sbjct: 510 ELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVK 548



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++VK++ +GAF+      +GL+HIS++S  + +   S+VV +GD V   +L    D GK
Sbjct: 310 GKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGK 369

Query: 683 IKLSMKVVDQN 693
           I L +K  ++N
Sbjct: 370 ISLGLKQTERN 380



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 6/97 (6%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I    E+I  I+    + +  KG V  + DFG F+   G  DGL+HI+ ++ +R+   S+
Sbjct: 207 ISKKAELIEQIS----IGEYRKGVVKNITDFGVFLDLDGI-DGLLHITDMTWKRIRHPSE 261

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 262 MVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G++V   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K +  N    I
Sbjct: 457 ITLGVKQLSSNPWNEI 472


>gi|261418318|ref|YP_003252000.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|319767722|ref|YP_004133223.1| ribonuclease PH [Geobacillus sp. Y412MC52]
 gi|261374775|gb|ACX77518.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|317112588|gb|ADU95080.1| ribonuclease PH [Geobacillus sp. Y412MC52]
          Length = 256

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 40/263 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATV----EEKVPSFMRGGGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E S+ G  S R +   RL  RA+  V+        T+ I 
Sbjct: 57  GWITAEYGMLPRATEQRNVREASK-GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+ A            +PI   +A  ++G+  D +  +I
Sbjct: 116 CDVIQADGGTRTASITGAYVALVLALAKLVEEGKLEALPIRDFLAATSVGI--DPEHGVI 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L D+  +ED    +D  V  T +G       ++I G  E  +        R  L  L E 
Sbjct: 174 L-DLDYNEDARAKVDMNVVMTGAG-----QFVEIQGTGEEAVF------SRAELDELLEA 221

Query: 536 SKV-----LSESRLQLGEFTPRV 553
           +++     ++  R  LGE+  R+
Sbjct: 222 AQIGIEQLIAVQRCALGEWAARI 244


>gi|42527583|ref|NP_972681.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola ATCC
           35405]
 gi|41818168|gb|AAS12592.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola ATCC
           35405]
          Length = 811

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I  G V K  DFGAF+      +GL HIS+ S  +++ K  D++K GD V   +L +
Sbjct: 527 VEDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKINKPEDILKPGDKVTCMILGY 586

Query: 678 D-DRGKIKLSMKVVDQN 693
           D   G++ L +K V  N
Sbjct: 587 DIQAGRVSLGLKQVTDN 603



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           KG V     FGAF+   G  DGL+HI+ +S   V +  D VK+G+ + +K++  D   K 
Sbjct: 447 KGTVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKR 505

Query: 683 IKLSMKVVDQN 693
           I LS+K   Q+
Sbjct: 506 INLSLKHFTQD 516


>gi|325130335|gb|EGC53101.1| ribosomal protein S1 [Neisseria meningitidis OX99.30304]
 gi|325134457|gb|EGC57102.1| ribosomal protein S1 [Neisseria meningitidis M13399]
          Length = 559

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 333 EIDESRRRISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|298368577|ref|ZP_06979895.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282580|gb|EFI24067.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
          Length = 561

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 195 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 335 EIDEDRRRISLGMKQCQAN 353



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D D+ +
Sbjct: 370 GAVKSITDFGVFVGLPGNIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVDKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|288931264|ref|YP_003435324.1| translation initiation factor 2, subunit alpha [Ferroglobus
           placidus DSM 10642]
 gi|288893512|gb|ADC65049.1| translation initiation factor 2, alpha subunit [Ferroglobus
           placidus DSM 10642]
          Length = 265

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   +I  G V +V+DFGAFV       ++G+VHIS++++  V    D VK+G  V  K+
Sbjct: 13  PSKGEIVIGTVTRVLDFGAFVSLDEYENKEGMVHISEVASGWVKDIRDYVKKGQKVVCKV 72

Query: 675 LDFD-DRGKIKLSMKVVDQNTGK 696
           L+ D  RG I LS+K V +   K
Sbjct: 73  LNVDRKRGHIDLSIKDVTERQRK 95


>gi|163845021|ref|YP_001622676.1| hypothetical protein BSUIS_B0897 [Brucella suis ATCC 23445]
 gi|163675744|gb|ABY39854.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|256015665|ref|YP_003105674.1| RNA-binding S1 domain-containing protein [Brucella microti CCM
           4915]
 gi|255998325|gb|ACU50012.1| RNA-binding S1 domain-containing protein [Brucella microti CCM
           4915]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|121997364|ref|YP_001002151.1| 30S ribosomal protein S1 [Halorhodospira halophila SL1]
 gi|121588769|gb|ABM61349.1| SSU ribosomal protein S1P [Halorhodospira halophila SL1]
          Length = 560

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+VV+ G  + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWRRVKNPSEVVEVGQEIEVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG FV   G  DGLVH+S LS +   + +    ++G+ V   +L  D +R +
Sbjct: 369 GQIKSITDFGIFVGLEGGIDGLVHLSDLSWDEAGEEAVRNYRKGEEVETVVLSIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++Q+
Sbjct: 429 ISLGIKQLEQD 439



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + ++G FV      +GLVH+S++  T +    + +V  GD V V +LD D +R +
Sbjct: 282 GKVTNITEYGCFVEIEEGVEGLVHVSEMDWTNKNVNPAKLVAVGDDVEVMILDIDEERRR 341

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 342 ISLGMKQCQPN 352


>gi|303229137|ref|ZP_07315938.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516150|gb|EFL58091.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
          Length = 257

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 21/201 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    +E     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATI----EENVPRWLKGSSQ 56

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   VSR  A  +   R +   RL  RA+  V+   A    ++ +  
Sbjct: 57  GWVTAEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+DA           PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAIDYTFGGFGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG 499
           +  +ED    +D  V  T +G
Sbjct: 173 LCYEEDSAAVVDMNVVRTGAG 193


>gi|282856237|ref|ZP_06265520.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Pyramidobacter
           piscolens W5455]
 gi|282585996|gb|EFB91281.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Pyramidobacter
           piscolens W5455]
          Length = 143

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V ++M +GAFV     +  ++HISQLS + +     V++    +  K++  D++G
Sbjct: 9   VVTGVVEQIMPYGAFVRLQSGQKAMIHISQLSHKFIKSVDAVLQPQQEIKAKVIKIDEKG 68

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I LS+K +++    P+
Sbjct: 69  RIDLSLKALEEPPTVPV 85


>gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 242

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I    G      GS L   G+T+ +      T   EQ V        
Sbjct: 5   TRADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMC-----TASAEQGVPRFKKDSG 59

Query: 372 NDFMM-HYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLR 424
             ++   Y  LP AT E  RM   S R    G      RL  R++   +  T     T+ 
Sbjct: 60  EGWLTAEYAMLPAATHE--RMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTIN 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           I  ++ ++DG +  A++ G+ +AL DA           G P+  P+A +++G++   D  
Sbjct: 118 IDCDVLQADGGTRTASITGAYIALADAIAHLTAQGVVPGNPLLPPIAAVSVGII---DGH 174

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           + L D+  +ED    +D  V  T  G
Sbjct: 175 VCL-DLPYEEDSRADVDLNVIMTQEG 199


>gi|91715111|gb|ABE55037.1| SSU ribosomal protein S1P [Shewanella denitrificans OS217]
          Length = 577

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 196 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 247

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 248 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 282



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 297 PESTKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 355

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 356 DIDEERRRISLGLK 369


>gi|24373949|ref|NP_717992.1| 30S ribosomal protein S1 [Shewanella oneidensis MR-1]
 gi|24348384|gb|AAN55436.1|AE015680_11 ribosomal protein S1 [Shewanella oneidensis MR-1]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PENTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKTN 352


>gi|116627549|ref|YP_820168.1| transcriptional regulator [Streptococcus thermophilus LMD-9]
 gi|116100826|gb|ABJ65972.1| Transcriptional accessory protein [Streptococcus thermophilus
           LMD-9]
          Length = 710

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKID 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|271965051|ref|YP_003339247.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
 gi|270508226|gb|ACZ86504.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
          Length = 294

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G V KV+ FGAFV      +GLVH+S+L+   VA   D V+ GD V V +++ D
Sbjct: 202 VGQILYGPVTKVVPFGAFVRVADDAEGLVHLSELTALPVAAALDAVQIGDEVTVIVIEID 261

Query: 679 D-RGKIKLS-----MKVVDQNTGKP 697
             R ++ LS     MK  D    KP
Sbjct: 262 PLRRRLALSRCQAAMKTWDLPPTKP 286


>gi|163738743|ref|ZP_02146157.1| RNA binding S1 [Phaeobacter gallaeciensis BS107]
 gi|161388071|gb|EDQ12426.1| RNA binding S1 [Phaeobacter gallaeciensis BS107]
          Length = 788

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + +ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK 
Sbjct: 637 KDGVETITDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKT 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V V + + D  R +I L+MK
Sbjct: 696 GQVVKVTVTEVDVPRKRIALTMK 718


>gi|241203331|ref|YP_002974427.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857221|gb|ACS54888.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 769

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 639 EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++++ D  R +I LSMK  D ++  P
Sbjct: 698 DVVKVRVVEVDAKRKRIALSMKRDDGSSAPP 728


>gi|17988737|ref|NP_541370.1| transcription accessory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|17984550|gb|AAL53634.1| transcription accessory protein (s1 RNA binding domain) [Brucella
           melitensis bv. 1 str. 16M]
          Length = 703

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 588 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 647

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 648 KRIGLTMR 655


>gi|294853853|ref|ZP_06794525.1| RNA-binding S1 domain-containing protein [Brucella sp. NVSL
           07-0026]
 gi|294819508|gb|EFG36508.1| RNA-binding S1 domain-containing protein [Brucella sp. NVSL
           07-0026]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|153810051|ref|ZP_01962719.1| hypothetical protein RUMOBE_00432 [Ruminococcus obeum ATCC 29174]
 gi|149834229|gb|EDM89309.1| hypothetical protein RUMOBE_00432 [Ruminococcus obeum ATCC 29174]
          Length = 723

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHIS+++   +    + V  GD V V+++  D  +
Sbjct: 653 ILKGTVRNVIDFGAFVDIGVHQDGLVHISEMTERYIKHPLEAVSVGDVVDVRVIGVDLKK 712

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 713 KRISLSMK 720


>gi|254710861|ref|ZP_05172672.1| hypothetical protein BpinB_11481 [Brucella pinnipedialis B2/94]
 gi|256029244|ref|ZP_05442858.1| hypothetical protein BpinM2_01040 [Brucella pinnipedialis
           M292/94/1]
 gi|256058929|ref|ZP_05449143.1| hypothetical protein Bneo5_01041 [Brucella neotomae 5K33]
 gi|261318435|ref|ZP_05957632.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261322869|ref|ZP_05962066.1| RNA-binding S1 domain-containing protein [Brucella neotomae 5K33]
 gi|265986234|ref|ZP_06098791.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|261297658|gb|EEY01155.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261298849|gb|EEY02346.1| RNA-binding S1 domain-containing protein [Brucella neotomae 5K33]
 gi|264658431|gb|EEZ28692.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M292/94/1]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|241758882|ref|ZP_04756995.1| ribosomal protein S1 [Neisseria flavescens SK114]
 gi|241321090|gb|EER57303.1| ribosomal protein S1 [Neisseria flavescens SK114]
          Length = 559

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 333 EIDEDRRRISLGMKQCQAN 351



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|225629363|ref|ZP_03787396.1| RNA-binding S1 domain-containing protein [Brucella ceti str. Cudo]
 gi|256157438|ref|ZP_05455356.1| hypothetical protein BcetM4_01081 [Brucella ceti M490/95/1]
 gi|256253584|ref|ZP_05459120.1| hypothetical protein BcetB_04659 [Brucella ceti B1/94]
 gi|260167665|ref|ZP_05754476.1| hypothetical protein BruF5_04624 [Brucella sp. F5/99]
 gi|261220719|ref|ZP_05935000.1| RNA-binding S1 domain-containing protein [Brucella ceti B1/94]
 gi|261757097|ref|ZP_06000806.1| RNA-binding S1 domain-containing protein [Brucella sp. F5/99]
 gi|265995930|ref|ZP_06108487.1| RNA-binding S1 domain-containing protein [Brucella ceti M490/95/1]
 gi|225615859|gb|EEH12908.1| RNA-binding S1 domain-containing protein [Brucella ceti str. Cudo]
 gi|260919303|gb|EEX85956.1| RNA-binding S1 domain-containing protein [Brucella ceti B1/94]
 gi|261737081|gb|EEY25077.1| RNA-binding S1 domain-containing protein [Brucella sp. F5/99]
 gi|262550227|gb|EEZ06388.1| RNA-binding S1 domain-containing protein [Brucella ceti M490/95/1]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|170726659|ref|YP_001760685.1| 30S ribosomal protein S1 [Shewanella woodyi ATCC 51908]
 gi|169812006|gb|ACA86590.1| ribosomal protein S1 [Shewanella woodyi ATCC 51908]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++    V       KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQEGQSV-------KGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGLK 347


>gi|23500631|ref|NP_700071.1| tex protein [Brucella suis 1330]
 gi|23464273|gb|AAN34076.1| tex protein, putative [Brucella suis 1330]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6]
 gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6]
          Length = 240

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL+DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSTG 197


>gi|254695919|ref|ZP_05157747.1| hypothetical protein Babob3T_15092 [Brucella abortus bv. 3 str.
           Tulya]
 gi|261216346|ref|ZP_05930627.1| RNA binding protein [Brucella abortus bv. 3 str. Tulya]
 gi|260917953|gb|EEX84814.1| RNA binding protein [Brucella abortus bv. 3 str. Tulya]
          Length = 713

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 598 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 657

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 658 KRIGLTMR 665


>gi|229083532|ref|ZP_04215870.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-44]
 gi|228699786|gb|EEL52433.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-44]
          Length = 722

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDVDMKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|219870701|ref|YP_002475076.1| 30S ribosomal protein S1 [Haemophilus parasuis SH0165]
 gi|219690905|gb|ACL32128.1| 30S ribosomal protein S1 [Haemophilus parasuis SH0165]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ +
Sbjct: 196 KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTR 254

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 255 VSLGLKQLGQD 265


>gi|194398593|ref|YP_002037544.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
 gi|194358260|gb|ACF56708.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
          Length = 709

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V K  +G V  V++FGAFV      DGL+HIS +S + +   S VV  GD  +VWVK +D
Sbjct: 633 VGKKLEGVVRXVVNFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 677 FDDRGKIKLSM 687
             +R K+ LS+
Sbjct: 693 -TEREKVNLSL 702


>gi|89255778|ref|YP_513140.1| ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115314270|ref|YP_762993.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501746|ref|YP_001427811.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009694|ref|ZP_02274625.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC200]
 gi|254367139|ref|ZP_04983171.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|290954430|ref|ZP_06559051.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|295312131|ref|ZP_06802940.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|122325696|sp|Q0BNH8|RNPH_FRATO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122501188|sp|Q2A562|RNPH_FRATH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228280|sp|A7NA52|RNPH_FRATF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89143609|emb|CAJ78797.1| Ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115129169|gb|ABI82356.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252961|gb|EBA52055.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|156252349|gb|ABU60855.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 235

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     +   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA       G+      P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|194335601|ref|YP_002017395.1| RNA binding S1 domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308078|gb|ACF42778.1| RNA binding S1 domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 592

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD  
Sbjct: 390 LHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQDLEVKVLKFDVH 449

Query: 681 G-KIKLSMKVVDQN 693
             +I L  K ++Q+
Sbjct: 450 ARRIALGHKQINQD 463



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV + D+GAFV      +GLVHIS++S T+ +      V  G  V   +L+ D D  
Sbjct: 305 QGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHT 364

Query: 682 KIKLSMKVVDQN 693
           K+ LSMK V+++
Sbjct: 365 KLSLSMKRVNED 376



 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AAR  EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 198 LEEAYAARREEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRI 252

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
              S+VV     + V ++ FD+  K + L MK ++ +  + I
Sbjct: 253 NHPSEVVDLDQPIKVVVVGFDENTKRVSLGMKQLESHPWENI 294


>gi|330945249|gb|EGH46912.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 355

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++ S+ +  +V    KG V  + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 156 AENSAEREALLESLQEGQQV----KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKH 210

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++V  GD + VK+L +D +R ++ L +K
Sbjct: 211 PSEIVNVGDEIDVKVLKYDRERNRVSLGLK 240



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 255 PESTRV-TARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 313

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 314 DIDEERRRISLGIKQCKSN 332


>gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 248

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R ++ +R +  + G  +   GS+L   G T+ +   T+    +E+    L GT   
Sbjct: 3   RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATV----EERVPFFLKGTGTG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP A  E +   A    + G      RL  RA+  V+   A    T+ I  +
Sbjct: 59  WVTAEYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV---------PISKPVAGIAMGLVKDGDDFIILSDI 479
           + ++DG +  A+V G+ +AL++A           P+   VA +++G+  + +  +   D+
Sbjct: 119 VLQADGGTRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEPLL---DL 175

Query: 480 SGDEDHLGHMDFKVAGTDSGI 500
             +ED    +D  +  T +G+
Sbjct: 176 CYEEDSAAMVDMNIVMTGAGV 196


>gi|256262203|ref|ZP_05464735.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|263091899|gb|EEZ16221.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|326411053|gb|ADZ68117.1| RNA-binding S1 domain-containing protein [Brucella melitensis M28]
 gi|326554345|gb|ADZ88984.1| RNA-binding S1 domain-containing protein [Brucella melitensis
           M5-90]
          Length = 713

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 598 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 657

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 658 KRIGLTMR 665


>gi|256043771|ref|ZP_05446693.1| transcription accessory protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260564956|ref|ZP_05835441.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|265990197|ref|ZP_06102754.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260152599|gb|EEW87692.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|263000866|gb|EEZ13556.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 713

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 598 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 657

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 658 KRIGLTMR 665


>gi|302878374|ref|YP_003846938.1| 30S ribosomal protein S1 [Gallionella capsiferriformans ES-2]
 gi|302581163|gb|ADL55174.1| ribosomal protein S1 [Gallionella capsiferriformans ES-2]
          Length = 570

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++
Sbjct: 203 IVKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLTVGDEIEAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+G+FV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PQGTRLF-GKVTNLTDYGSFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQVGDEVEVMIL 342

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 343 EIDEQRRRISLGMKQCHSN 361



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG F+   G  DGLVH+S LS  +  +      K+GD V   +L  D +R 
Sbjct: 377 RGQIKSITDFGVFIGLDGDIDGLVHLSDLSWSQPGEEMVRNFKKGDEVEAVVLAIDVERE 436

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 437 RISLGIK---QMEGDPF 450


>gi|225075203|ref|ZP_03718402.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
           NRL30031/H210]
 gi|261380192|ref|ZP_05984765.1| ribosomal protein S1 [Neisseria subflava NJ9703]
 gi|319638403|ref|ZP_07993165.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
 gi|224953378|gb|EEG34587.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
           NRL30031/H210]
 gi|284797039|gb|EFC52386.1| ribosomal protein S1 [Neisseria subflava NJ9703]
 gi|317400152|gb|EFV80811.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
          Length = 561

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 335 EIDEDRRRISLGMKQCQAN 353



 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|172041146|ref|YP_001800860.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
 gi|171852450|emb|CAQ05426.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
          Length = 257

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +RDI           GS L   G+T+ +   ++         DS  G   
Sbjct: 11  TRADGRSVDQLRDIRITRRFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW-- 68

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP AT E  RM   S R    GR      L  RA+   +  T     T+ I
Sbjct: 69  --LTAEYAMLPSATHE--RMPRESMRGKVKGRTHEISRLVGRALRAAVDLTELGENTIAI 124

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D +
Sbjct: 125 DCDVLQADGGTRTAAITGAYVALADALAYLQEQGVVPGKPLRAPVAAVSVGII----DGV 180

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+  +ED    +D  V  T +G
Sbjct: 181 ACLDLPYEEDSRADVDMNVVMTKAG 205


>gi|167855105|ref|ZP_02477877.1| 30S ribosomal protein S1 [Haemophilus parasuis 29755]
 gi|167853740|gb|EDS24982.1| 30S ribosomal protein S1 [Haemophilus parasuis 29755]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ +
Sbjct: 196 KGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTR 254

Query: 683 IKLSMKVVDQN 693
           + L +K + Q+
Sbjct: 255 VSLGLKQLGQD 265


>gi|162210774|ref|YP_562760.2| 30S ribosomal protein S1 [Shewanella denitrificans OS217]
          Length = 555

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGLK 347


>gi|161620957|ref|YP_001594843.1| RNA-binding S1 domain-containing protein [Brucella canis ATCC
           23365]
 gi|254703225|ref|ZP_05165053.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|260567843|ref|ZP_05838312.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 4 str.
           40]
 gi|261753854|ref|ZP_05997563.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|161337768|gb|ABX64072.1| RNA binding S1 domain protein [Brucella canis ATCC 23365]
 gi|260154508|gb|EEW89589.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 4 str.
           40]
 gi|261743607|gb|EEY31533.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
           686]
          Length = 767

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|55822633|ref|YP_141074.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
 gi|55738618|gb|AAV62259.1| transcriptional regulator, putative [Streptococcus thermophilus
           CNRZ1066]
          Length = 710

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKID 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|306846114|ref|ZP_07478676.1| RNA-binding S1 domain-containing protein [Brucella sp. BO1]
 gi|306273365|gb|EFM55226.1| RNA-binding S1 domain-containing protein [Brucella sp. BO1]
          Length = 767

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|306820879|ref|ZP_07454499.1| possible ribosomal protein S1 [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550993|gb|EFM38964.1| possible ribosomal protein S1 [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 372

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V  + D+G F++     DG VHIS +S + V    +V+K GDTV VK++  +
Sbjct: 274 VGDIVDGEVKNIKDYGVFINLYPVVDGFVHISNISEDFVKNPGEVLKVGDTVQVKIIGLN 333

Query: 679 DRG-KIKLSM 687
           +   KI+LSM
Sbjct: 334 EEDKKIELSM 343



 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E ++ +++  E  K +KG V  V D+G FV   G   GLVH+S++S  R  K  D+ K  
Sbjct: 178 EKLKELSETIEEGKTFKGIVKDVKDYGVFVDIGGMV-GLVHVSEVSWNRSKKLKDMFKIE 236

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             + V++L+F  +  ++ LS+K
Sbjct: 237 QEIDVQVLNFSLEEKRLSLSIK 258


>gi|254712666|ref|ZP_05174477.1| hypothetical protein BcetM6_04696 [Brucella ceti M644/93/1]
 gi|254715736|ref|ZP_05177547.1| hypothetical protein BcetM_04704 [Brucella ceti M13/05/1]
 gi|261217494|ref|ZP_05931775.1| RNA-binding S1 domain-containing protein [Brucella ceti M13/05/1]
 gi|261320369|ref|ZP_05959566.1| RNA-binding S1 domain-containing protein [Brucella ceti M644/93/1]
 gi|260922583|gb|EEX89151.1| RNA-binding S1 domain-containing protein [Brucella ceti M13/05/1]
 gi|261293059|gb|EEX96555.1| RNA-binding S1 domain-containing protein [Brucella ceti M644/93/1]
          Length = 767

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|289208391|ref|YP_003460457.1| ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
 gi|288944022|gb|ADC71721.1| ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
          Length = 556

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAF+   G  DGL+HI+ ++ +RV   SDVV+ G  V VK+L FD +R
Sbjct: 194 VVKGIVKNLTDYGAFLDLGGI-DGLLHITDMAWKRVKHPSDVVEIGQEVEVKVLKFDRER 252

Query: 681 GKIKLSMKVVDQNTGKPI 698
            ++ L +K + ++  + I
Sbjct: 253 MRVSLGLKQLGEDPWENI 270



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +I+ G+V  + D+G FV      +GLVH+S++  T +      VV  GD V V +L
Sbjct: 275 PTGTRIF-GKVTNITDYGCFVEIEDGVEGLVHVSEMDWTNKNVNPGKVVAIGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK    N
Sbjct: 334 DLDEERRRISLGMKQCQSN 352



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG FV   G  DGL+H+S LS     + +    K+GD V   +L  D +R 
Sbjct: 368 RGQIKSITDFGVFVGLDGGIDGLIHLSDLSWHEAGEEAIRNFKKGDEVEAVVLSVDPERE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D++
Sbjct: 428 RISLGLKQLDRD 439


>gi|223365844|pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus
           Anthracis At 1.7 A Resolution
          Length = 255

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 11  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 66

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 67  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 127 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 183

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 184 LDLNYAEDSKADVDMNVIMTGKG 206


>gi|153871353|ref|ZP_02000546.1| 30S ribosomal protein S1 [Beggiatoa sp. PS]
 gi|152072182|gb|EDN69455.1| 30S ribosomal protein S1 [Beggiatoa sp. PS]
          Length = 562

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+VV  GD V VK+L F DR 
Sbjct: 196 VLPGIVKNLTDYGAFVDLGGV-DGLLHITDMAWRRVKHPSEVVNVGDEVEVKVLKF-DRE 253

Query: 682 KIKLSM 687
           +I++S+
Sbjct: 254 RIRVSL 259



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  +++ G+V  + D+G FV      +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 277 PEGTRLF-GRVTNLADYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKIVQVGDEVEVMVL 335

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 336 DIDEERRRISLGIK 349


>gi|254700105|ref|ZP_05161933.1| hypothetical protein Bsuib55_04484 [Brucella suis bv. 5 str. 513]
 gi|261750596|ref|ZP_05994305.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 5 str.
           513]
 gi|261740349|gb|EEY28275.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 5 str.
           513]
          Length = 767

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 652 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 711

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 712 KRIGLTMR 719


>gi|254690775|ref|ZP_05154029.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 6
           str. 870]
 gi|256255959|ref|ZP_05461495.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
           str. C68]
 gi|260756348|ref|ZP_05868696.1| transcriptional accessory protein [Brucella abortus bv. 6 str. 870]
 gi|260882173|ref|ZP_05893787.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
           str. C68]
 gi|260676456|gb|EEX63277.1| transcriptional accessory protein [Brucella abortus bv. 6 str. 870]
 gi|260871701|gb|EEX78770.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
           str. C68]
          Length = 713

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 598 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 657

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 658 KRIGLTMR 665


>gi|183597211|ref|ZP_02958704.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
 gi|188023525|gb|EDU61565.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
          Length = 237

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR ++ +R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPEGRMADQMRPIKISRNYTKHAEGSVLIEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D           A  P+   VA +++G+V DG+    L
Sbjct: 117 DVIQADGGTRTAAISGACVALVDALNKMVEQGKLAQSPLKSMVAAVSVGIV-DGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V   D G
Sbjct: 173 CDLEYVEDSAAETDMNVVMMDDG 195


>gi|229829540|ref|ZP_04455609.1| hypothetical protein GCWU000342_01636 [Shuttleworthia satelles DSM
           14600]
 gi|229791529|gb|EEP27643.1| hypothetical protein GCWU000342_01636 [Shuttleworthia satelles DSM
           14600]
          Length = 818

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHIS++S   +    + V  GD V V+++  D D+
Sbjct: 645 VLKGTVRNVVDFGAFVDIGVHQDGLVHISRISDRFIKHPLEAVSVGDIVDVQVVAVDLDK 704

Query: 681 GKIKLSMKV 689
            ++ LSM++
Sbjct: 705 QRVALSMRI 713


>gi|261880508|ref|ZP_06006935.1| YhgF like protein [Prevotella bergensis DSM 17361]
 gi|270332848|gb|EFA43634.1| YhgF like protein [Prevotella bergensis DSM 17361]
          Length = 710

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQL+   V   +DVVK    V VK+++ D  R +I
Sbjct: 645 GIVTNITNFGAFVDIGVHQDGLVHISQLANRFVKDPNDVVKLHQHVRVKVIEVDRRRRRI 704

Query: 684 KLSMK 688
            L+MK
Sbjct: 705 ALTMK 709


>gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|258510209|ref|YP_003183643.1| RNA binding S1 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218239326|gb|EED06524.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|257476935|gb|ACV57254.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 134

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  +  FGAFV       GLVHIS++S + V   +D +K  D V VK+L  
Sbjct: 4   EVGSKVTGKVTGITRFGAFVTLPEGETGLVHISEISDDYVRDVNDYLKVNDEVTVKVLSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
              GKI LS++  ++++
Sbjct: 64  SGDGKIALSIRQANESS 80


>gi|218249762|ref|YP_002374655.1| ribosomal protein S1 [Borrelia burgdorferi ZS7]
 gi|226321962|ref|ZP_03797487.1| ribosomal protein S1 [Borrelia burgdorferi Bol26]
 gi|218164950|gb|ACK75011.1| ribosomal protein S1 [Borrelia burgdorferi ZS7]
 gi|226232552|gb|EEH31306.1| ribosomal protein S1 [Borrelia burgdorferi Bol26]
          Length = 551

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|15594472|ref|NP_212261.1| 30S ribosomal protein S1 [Borrelia burgdorferi B31]
 gi|2688008|gb|AAC66510.1| ribosomal protein S1 (rpsA) [Borrelia burgdorferi B31]
          Length = 553

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 272 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQIVEVKILE 331

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 332 IDKENQKISLGIKQINEN 349



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 169 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 228

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 229 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 262


>gi|312148223|gb|ADQ30882.1| ribosomal protein S1 [Borrelia burgdorferi JD1]
          Length = 551

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVGSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
          Length = 246

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDE 360
           ++ D+  R DGR    +R I  ++G+ ++  GS+   +G+T+ +  V       G R   
Sbjct: 6   LLSDQGFRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKA 65

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +   L   Q       Y+    +TGE        RR        RR     +  T  +P
Sbjct: 66  LHDKVLLNCQ-------YSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAI-LTHLYP 117

Query: 421 YT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + + I  ++ +SDG +  A V  ++LA++DAG+P+   V      L++D      + DI
Sbjct: 118 RSQIDIYVQVLQSDGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTP----VVDI 173

Query: 480 SGDEDHLGHMDFKVA 494
           S  E+ +G  +  VA
Sbjct: 174 SYLEESVGSPEMVVA 188


>gi|27468082|ref|NP_764719.1| 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
 gi|27315627|gb|AAO04761.1|AE016747_258 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
          Length = 166

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G  V VK+L  D 
Sbjct: 53  DDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDE 112

Query: 679 DRGKIKLSMK 688
           D  +I LS+K
Sbjct: 113 DNERISLSIK 122


>gi|89098915|ref|ZP_01171795.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
 gi|89086319|gb|EAR65440.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
          Length = 277

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R I  +   L    GS L   G+T+ I   ++    DE+    + G  +
Sbjct: 31  MRKDGREQLQLRPIHIETNYLMHPEGSVLISVGNTKVICTASI----DERVPPFMRGEGK 86

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     +  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 87  GWITAEYSMLPRATEQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 146

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A             PI++ +A  ++G++++     ++
Sbjct: 147 DVIQADGGTRTASITGAFVAMAIAVEKLYSNKKLSKFPITQFLAATSVGILENKQ---VV 203

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T +G    +Q   +    S + +   L+ A+ G   + +  
Sbjct: 204 LDLNYAEDSKAEVDMNVVMTGNGEFVELQGTGEEATFSASQLTELLKAAEEGVGRLFDIQ 263

Query: 536 SKVLSE 541
            +VL E
Sbjct: 264 KQVLGE 269


>gi|87119277|ref|ZP_01075175.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
 gi|86165668|gb|EAQ66935.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
          Length = 561

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S+++  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTKVT-AKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGVK 347



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +   + +    K+GD +   +L  D +R +
Sbjct: 369 GGIKSITDFGVFIGLEGGIDGLVHLSDLSWDETGEEAVRQYKKGDNLETVVLSIDAERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGVKQLEED 439


>gi|313894107|ref|ZP_07827673.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441671|gb|EFR60097.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 251

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 21/201 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   VSR  A  +   R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+DA           PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG 499
           +  +ED    +D  V  T SG
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSG 193


>gi|309379231|emb|CBX22188.1| 30S ribosomal protein S1 [Neisseria lactamica Y92-1009]
          Length = 326

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 IIKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261


>gi|223889064|ref|ZP_03623653.1| ribosomal protein S1 [Borrelia burgdorferi 64b]
 gi|223885313|gb|EEF56414.1| ribosomal protein S1 [Borrelia burgdorferi 64b]
          Length = 551

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347



 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVGSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|167465524|ref|ZP_02330613.1| 30S ribosomal protein S1 [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 135

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G V ++  FGAFV      +GLVHISQ++   +    +V+KEG  V VK+LD +
Sbjct: 14  IGDIVDGTVKRLASFGAFVEITPGVEGLVHISQIAHRHIGTPQEVLKEGQEVKVKILDIN 73

Query: 679 DRGK-IKLSMKVVDQ 692
              K I LS+K  ++
Sbjct: 74  AAEKRISLSIKETEE 88


>gi|152996867|ref|YP_001341702.1| 30S ribosomal protein S1 [Marinomonas sp. MWYL1]
 gi|150837791|gb|ABR71767.1| ribosomal protein S1 [Marinomonas sp. MWYL1]
          Length = 560

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S+++  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PENTKVT-AKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCTMN 352



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +   + +    K+GD +   +L  D +R +
Sbjct: 369 GAIKSITDFGVFIGLDGGIDGLVHLSDLSWDETGEEAVRQYKKGDMLETVVLSIDAERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGVKQLEED 439


>gi|116495974|ref|YP_807708.1| RNA-binding protein [Lactobacillus casei ATCC 334]
 gi|191639453|ref|YP_001988619.1| S1 family RNA-binding protein [Lactobacillus casei BL23]
 gi|227533048|ref|ZP_03963097.1| RNA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239630373|ref|ZP_04673404.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067524|ref|YP_003789547.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|116106124|gb|ABJ71266.1| RNA binding protein (S1 domain) [Lactobacillus casei ATCC 334]
 gi|190713755|emb|CAQ67761.1| S1 family RNA-binding protein [Lactobacillus casei BL23]
 gi|227189449|gb|EEI69516.1| RNA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526656|gb|EEQ65657.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439931|gb|ADK19697.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|327383545|gb|AEA55021.1| Polyribonucleotide nucleotidyltransferase [Lactobacillus casei
           LC2W]
 gi|327386738|gb|AEA58212.1| Polyribonucleotide nucleotidyltransferase [Lactobacillus casei
           BD-II]
          Length = 161

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  +  FGAFV     + GLVHIS++S   V    DV+  G+ V VK+L  
Sbjct: 4   EVGTKVTGKVTGITKFGAFVELGDGKTGLVHISEVSDAYVKDIHDVLHVGEPVTVKVLSI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  QD-GKIGLSIRKAVDK 78


>gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016]
 gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
 gi|33301654|sp|Q8DDX4|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216003|sp|Q7MPT3|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016]
 gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALA 237


>gi|332968500|gb|EGK07563.1| tRNA nucleotidyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+ + +R ++ +    +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASV----ESGVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++  ++        T+ +  
Sbjct: 57  GWVTAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+DA             P+   VA +++G VK+G+   IL
Sbjct: 117 DVLQADGGTRTASITGAAIALIDALESLQQKKKLKADPLVGLVAAVSVG-VKNGE---IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED     D  V  T  G
Sbjct: 173 LDLNYEEDSSCDTDLNVVMTQKG 195


>gi|326794751|ref|YP_004312571.1| ribosomal protein S1 [Marinomonas mediterranea MMB-1]
 gi|326545515|gb|ADZ90735.1| ribosomal protein S1 [Marinomonas mediterranea MMB-1]
          Length = 560

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S+++  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTKVT-ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGIK 347



 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +   + +    K+GD +   +L  D +R +
Sbjct: 369 GAIKSITDFGVFIGLDGGIDGLVHLSDLSWDETGEEAVRQYKKGDLLETVVLSIDAERER 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGVK 434


>gi|291550487|emb|CBL26749.1| Transcriptional accessory protein [Ruminococcus torques L2-14]
          Length = 716

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 8/89 (8%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM + I  TDV E+  + +G V+K     V+DFG FV     +DGLVHISQ++ + +   
Sbjct: 626 EMPKPILRTDVLEMKDLKEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKYIKHP 685

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            + V  GD V VK++  D  + +I+L+M+
Sbjct: 686 LEAVSVGDIVDVKVMSVDLKKKRIQLTMR 714


>gi|254473883|ref|ZP_05087277.1| transcription accessory protein [Pseudovibrio sp. JE062]
 gi|211956993|gb|EEA92199.1| transcription accessory protein [Pseudovibrio sp. JE062]
          Length = 818

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVH+SQL+   V     VVK GD V V++++ D  R
Sbjct: 674 MLEGTVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVDDPHTVVKAGDIVKVRVVEVDIAR 733

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 734 KRIGLTMR 741


>gi|206896344|ref|YP_002247530.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738961|gb|ACI18039.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
          Length = 559

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G+VV ++  G FV      +G +HISQLS  RV    D V EGD +  K++  D +
Sbjct: 452 QLVRGKVVTIIPQGVFVEIADGVEGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEE 511

Query: 680 RGKIKLSMKVV 690
           R +I LS+K +
Sbjct: 512 RRRISLSVKAI 522



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           +G VV + DFG FV      +GLV    +S +R    ++VV  GD V V +L  +  DR 
Sbjct: 369 EGTVVNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDR- 427

Query: 682 KIKLSMK 688
           KI LSM+
Sbjct: 428 KITLSMR 434


>gi|167759788|ref|ZP_02431915.1| hypothetical protein CLOSCI_02151 [Clostridium scindens ATCC 35704]
 gi|167662407|gb|EDS06537.1| hypothetical protein CLOSCI_02151 [Clostridium scindens ATCC 35704]
          Length = 717

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I KG V  V+DFG FV     +DGLVHIS+++ ++  K   +VV  GD V VK+L  D  
Sbjct: 647 ILKGTVRNVIDFGVFVDIGVHQDGLVHISEITDKKFIKHPLEVVSVGDIVDVKVLSVDLK 706

Query: 680 RGKIKLSMK 688
           + +I+L+MK
Sbjct: 707 KKRIQLTMK 715


>gi|163791057|ref|ZP_02185478.1| hypothetical protein CAT7_12105 [Carnobacterium sp. AT7]
 gi|159873702|gb|EDP67785.1| hypothetical protein CAT7_12105 [Carnobacterium sp. AT7]
          Length = 162

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G V  + +FGAF+     + GLVHIS++S   +    +V+K G+ V VK++  
Sbjct: 4   EVGEKVTGTVSGITNFGAFIDLGDRKTGLVHISEVSDSFIKDIKEVLKVGEQVTVKVMSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKIGLSIR 74


>gi|70726436|ref|YP_253350.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
 gi|84029458|sp|Q4L6I1|RS1_STAHJ RecName: Full=30S ribosomal protein S1
 gi|68447160|dbj|BAE04744.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
          Length = 392

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  G  V VK+   + D 
Sbjct: 196 VIKGKVARLTNFGAFVDIGGV-DGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDA 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+VV++ +FGAFV       GLVHIS+++ E +    + ++ G  V VK+L  D+  
Sbjct: 281 VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEEN 340

Query: 682 -KIKLSMK 688
            +I LS+K
Sbjct: 341 ERISLSIK 348



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK+GD + 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIE 68

Query: 671 -WVKLLDFDDR 680
            +V  ++ D+ 
Sbjct: 69  AYVTKIEVDEE 79


>gi|269798441|ref|YP_003312341.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
 gi|269095070|gb|ACZ25061.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
          Length = 770

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  
Sbjct: 636 RKHVVSLEDI-KVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAV 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           GD +  +++  D  R +I LS+K +
Sbjct: 694 GDIIEAQIISVDVKRNRIGLSVKAL 718


>gi|212638049|ref|YP_002314569.1| transcriptional accessory protein Tex, contains RNAse H and S1
           domains [Anoxybacillus flavithermus WK1]
 gi|212559529|gb|ACJ32584.1| Transcriptional accessory protein Tex, contains RNAse H and S1
           domains [Anoxybacillus flavithermus WK1]
          Length = 733

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFG FV     +DGLVHIS+LST  V    DVV  GD   VWV  +D   + 
Sbjct: 659 EGTVRNVVDFGVFVDIGVKQDGLVHISKLSTRYVKHPLDVVSVGDIVKVWVDSVDL-QKE 717

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 718 RIALTM 723


>gi|297583496|ref|YP_003699276.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297141953|gb|ADH98710.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 142

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G++  +  FGAFV     + GLVHIS ++   V   + V+  GDT+ VK+L  
Sbjct: 6   EAGSIVEGKITGIKPFGAFVALDEKKQGLVHISHVAHGYVEDINSVLSVGDTIKVKILSV 65

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           D+  GKI LS+K       +P
Sbjct: 66  DEESGKISLSIKETQPKPERP 86


>gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium]
          Length = 242

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR    +R I+     L+ T GS+L   G+T+ I   TL    +++    L  T R 
Sbjct: 4   RSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICAATL----EDKSAPFLKNTGRG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP +T +       +R ++G       RL  R++  V    +    T+ +  
Sbjct: 60  WVTAEYSMLPAST-QTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL++             +P++  V+ I++G++++     IL
Sbjct: 119 DVIQADGGTRTASITGGFIALVELLKKMKADGIVKEIPVNDYVSAISVGIIENK----IL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D     T SG
Sbjct: 175 LDLEYEEDSKADVDMNFVMTGSG 197


>gi|238018731|ref|ZP_04599157.1| hypothetical protein VEIDISOL_00575 [Veillonella dispar ATCC 17748]
 gi|237865202|gb|EEP66492.1| hypothetical protein VEIDISOL_00575 [Veillonella dispar ATCC 17748]
          Length = 774

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  
Sbjct: 636 RKHVVSLEDI-KVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAV 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD +  +++  D  R +I LS+K +     K
Sbjct: 694 GDIIEAQIISVDVKRNRIGLSVKALQPEKPK 724


>gi|170288939|ref|YP_001739177.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|281412543|ref|YP_003346622.1| RNA binding S1 domain protein [Thermotoga naphthophila RKU-10]
 gi|170176442|gb|ACB09494.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
 gi|281373646|gb|ADA67208.1| RNA binding S1 domain protein [Thermotoga naphthophila RKU-10]
          Length = 124

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ KG+V K++ +GAFV   G   G +HIS++S   V +  D + EG  +  K++  
Sbjct: 2   KVGELVKGKVSKIVRYGAFVDIEGGERGFIHISKISKNYVKRIEDYLHEGQEISAKVIGR 61

Query: 678 DDRGKIKLSMKVVDQNTGK 696
              G  +LS+K +++ T K
Sbjct: 62  ARNGGWELSLKDLEEETPK 80


>gi|119897363|ref|YP_932576.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
 gi|119669776|emb|CAL93689.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
          Length = 568

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++
Sbjct: 202 VVKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLNVGDEIEAKVLKFDQEK 260

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 261 NRVSLGLK 268



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 283 PQGTRLF-GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMIL 341

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 342 EIDEDRRRISLGMKQCASN 360



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG F+   G  DGLVH+S LS +E         K+GD V   +L  D +R 
Sbjct: 376 RGQIKSITDFGVFIGLDGGIDGLVHLSDLSWSESGEDAVRKFKKGDEVEAVVLAIDVERE 435

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 436 RISLGIK---QLEGDPF 449


>gi|311031422|ref|ZP_07709512.1| ribonuclease PH [Bacillus sp. m3-13]
          Length = 253

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 23/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+   +R+I      +    GS L   G+T+ I   T+    +++    + G  + 
Sbjct: 3   RTDGREQNQLREIEIITDYITHPEGSVLISVGNTKVICSATI----EDRVPPFMRGGGKG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  +
Sbjct: 59  WITAEYSMLPRATEKRTMRESTKGKVTGRTMEIQRLIGRALRSVVELDKIGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A++            A +P++  +A  ++G++KDG   + L+
Sbjct: 119 VIQADGGTRTASITGAFVAMVLAFQKLVEAKRIASLPVTDFLAATSVGVMKDGQALLDLN 178

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            I   ED    +D  V  T S  +  +Q   +    +   +   L  A+ G LH++    
Sbjct: 179 YI---EDSTAQVDMNVIMTGSLDLVELQGTGEESTFTRKQLNELLDMAEEGILHLVEVQK 235

Query: 537 KVL 539
           K L
Sbjct: 236 KAL 238


>gi|257866170|ref|ZP_05645823.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257872500|ref|ZP_05652153.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
 gi|257800104|gb|EEV29156.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257806664|gb|EEV35486.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
          Length = 450

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +  Q  + +   GS +   GDT  I   T+    +++    L  T +
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATI----EDRVPPFLRDTGK 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        L D  +   PI + +A I++G++ DG     +
Sbjct: 117 DVVQADGGTRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSSAAVDMNLVMTESG 196


>gi|297616324|ref|YP_003701483.1| RNA binding S1 domain protein [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144161|gb|ADI00918.1| RNA binding S1 domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 127

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V  +  FGAFV     + GLVHIS+++   V    D ++EG  V VK+L+  D G
Sbjct: 13  IVEGVVQGITRFGAFVELPDGKVGLVHISEIADTYVKDVKDFLQEGQRVKVKVLNVADNG 72

Query: 682 KIKLSMK 688
           K+ LS++
Sbjct: 73  KVGLSVR 79


>gi|258422493|ref|ZP_05685401.1| ribosomal protein S1 [Staphylococcus aureus A9635]
 gi|257847250|gb|EEV71256.1| ribosomal protein S1 [Staphylococcus aureus A9635]
          Length = 391

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIASGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
 gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
          Length = 261

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +   +       GS+L   G+T+ +   ++    +E     L G QR
Sbjct: 2   IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASV----EEGVPQWLRGQQR 57

Query: 372 NDFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP +T + +R      S R     RL  RA+   +   A   +T+ I  ++
Sbjct: 58  GWVTAEYALLPRSTAQRTRRERNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDV 117

Query: 430 TESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A++ G  +AL             A  PI + VA ++ G V  G + ++  D
Sbjct: 118 LQADGGTRTASITGGYVALALALHRLTAAGRLAANPIRRAVAAVSAGYV--GGNALL--D 173

Query: 479 ISGDEDHLGHMDFKVAGTDSG 499
           +   ED +  MD  +  TD G
Sbjct: 174 LDYSEDSVADMDCNLVLTDDG 194


>gi|328956576|ref|YP_004373962.1| hypothetical protein CAR_c01950 [Carnobacterium sp. 17-4]
 gi|328672900|gb|AEB28946.1| hypothetical protein CAR_c01950 [Carnobacterium sp. 17-4]
          Length = 163

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G V  + +FGAF+     + GLVHIS++S   +    +V+K G+ V VK++  
Sbjct: 4   EVGEKVTGTVSGITNFGAFIDLGDRKTGLVHISEVSDSFIKDIKEVLKVGEQVTVKVMSI 63

Query: 678 DDRGKIKLSMK 688
            D GKI LS++
Sbjct: 64  GDDGKIGLSIR 74


>gi|317056439|ref|YP_004104906.1| hydroxymethylbutenyl pyrophosphate reductase [Ruminococcus albus 7]
 gi|315448708|gb|ADU22272.1| hydroxymethylbutenyl pyrophosphate reductase [Ruminococcus albus 7]
          Length = 656

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K  +V +  FGAF       DGL+HISQ++ +RV   +D++  GD V  ++ + 
Sbjct: 571 QVGQDVKATIVSITSFGAFAQIIDGIDGLIHISQIANQRVNNVADILSVGDEVDCRITEI 630

Query: 678 D-DRGKIKLSMKVV 690
           D D+ +I LS + +
Sbjct: 631 DADKKRISLSRRAL 644



 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D   V    +G V  + D+G FV   G  DGLV  + LS  R+   SDVV  GD V VK+
Sbjct: 483 DTASVGAEMEGVVKSITDYGVFVDL-GGVDGLVRRADLSWNRIKHPSDVVSIGDKVTVKI 541

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
            D D +  K+ L+ K   +N
Sbjct: 542 KDIDPETKKVSLTYKKDSEN 561


>gi|254468796|ref|ZP_05082202.1| 30S ribosomal protein S1 [beta proteobacterium KB13]
 gi|207087606|gb|EDZ64889.1| 30S ribosomal protein S1 [beta proteobacterium KB13]
          Length = 500

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 7/86 (8%)

Query: 605 AARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           A RE +I S+T+   V    KG +  + D+GAFV   G  DGL+HI+ L+ +R+   S+V
Sbjct: 191 ADRESIIESLTEGATV----KGIIKNITDYGAFVDLGGI-DGLLHITDLAWKRIKHPSEV 245

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  GD +  K+L +D D+ ++ L +K
Sbjct: 246 LNVGDEIEAKVLKYDQDKNRVSLGLK 271



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG F+   G  DGL+H+S +S TE         K+GD V  K+L  D D+ 
Sbjct: 379 KGSIKSITDFGIFIGLDGGIDGLIHLSDISATESNEDAVKNYKKGDEVEAKILAIDVDKE 438

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 439 RISLGIK 445



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +I+ G+V  + D+GAFV      +GLVH+S++  T +    + VV  GD V V +L
Sbjct: 286 PVSTRIF-GKVSNLTDYGAFVEIESGIEGLVHVSEMDWTNKNIHPTKVVNLGDEVEVMIL 344

Query: 676 DFDDRGKIKLSMKV 689
           + D+ GK +LS+ +
Sbjct: 345 EVDE-GKRRLSLGI 357


>gi|126438556|ref|YP_001059966.1| ribonuclease PH [Burkholderia pseudomallei 668]
 gi|167903809|ref|ZP_02491014.1| ribonuclease PH [Burkholderia pseudomallei NCTC 13177]
 gi|166228273|sp|A3NC95|RNPH_BURP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126218049|gb|ABN81555.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 668]
          Length = 243

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++  R  E   +  
Sbjct: 1   MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+   G 
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGMF--GG 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
             ++  D+  DED     D  V  T +G
Sbjct: 175 TPVL--DLDYDEDSACDTDMNVVMTGAG 200


>gi|322517097|ref|ZP_08069982.1| YhgF like protein [Streptococcus vestibularis ATCC 49124]
 gi|322124357|gb|EFX95865.1| YhgF like protein [Streptococcus vestibularis ATCC 49124]
          Length = 710

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKVD 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|288941369|ref|YP_003443609.1| 30S ribosomal protein S1 [Allochromatium vinosum DSM 180]
 gi|288896741|gb|ADC62577.1| ribosomal protein S1 [Allochromatium vinosum DSM 180]
          Length = 560

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAF+   G  DGL+HI+ ++  RV   S+VV+ GD + VK+L FD +R +
Sbjct: 196 KGVVKNLTDYGAFLDLGGI-DGLLHITDMAWRRVKHPSEVVEIGDEISVKVLKFDRERQR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  +++ G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTRVF-GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCAMN 352



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S +   + +    K+GD +   +L  D +R +
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWDEAGENALRRYKKGDELETVVLSVDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K +D++
Sbjct: 429 ISLGVKQLDKD 439


>gi|228478427|ref|ZP_04063035.1| protein tex [Streptococcus salivarius SK126]
 gi|228250106|gb|EEK09376.1| protein tex [Streptococcus salivarius SK126]
          Length = 710

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKVD 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|149200323|ref|ZP_01877343.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
 gi|149136620|gb|EDM25053.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
          Length = 455

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++  V ++  +  G+V  + DFGAF+   G  DGL+HI+ +S  R+A  S+++  GDT  
Sbjct: 188 ALLKVIKIGDVLPGKVKNITDFGAFIDLNGM-DGLLHITDMSWGRIAHPSEMLAIGDTTE 246

Query: 672 VKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           V +LD D+  K + L +K    +  K I
Sbjct: 247 VMILDIDEEKKRVSLGLKQKSNDPWKDI 274



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVK 673
           D P +  I KG+V  +  +GAFV      DG++HIS +S T++V   ++V+K+GD V  K
Sbjct: 364 DYP-IGSIVKGKVRNLTTYGAFVEIKDDIDGMIHISDMSWTKKVNNPAEVLKKGDEVEAK 422

Query: 674 LLDFD-DRGKIKLSMK 688
           +LD D +  +I L +K
Sbjct: 423 VLDIDPNEQRISLGIK 438



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682
           G+VV +M +GAF+      +GL+H+S++S T+R+ + SDV+  G+ V   +LD  +D  K
Sbjct: 286 GKVVNIMPYGAFIELEDGIEGLIHVSEMSWTKRITRASDVLMIGEEVEAIILDIQEDTRK 345

Query: 683 IKLSMKVVDQN 693
           I L ++    N
Sbjct: 346 ISLGLRQTQDN 356


>gi|332968746|gb|EGK07796.1| YhgF like protein [Psychrobacter sp. 1501(2011)]
          Length = 861

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S++D+ E  ++ +G V  V  FG FV     +DGLVHIS+++ + V    ++VK 
Sbjct: 698 RDDVNSVSDLEEGMQL-EGVVTNVTGFGCFVDVGVHQDGLVHISEMANDFVEDPMNLVKP 756

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V V+++  D  R +I  SMK
Sbjct: 757 GDIVNVRVISVDAKRNRIGFSMK 779


>gi|118594697|ref|ZP_01552044.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
 gi|118440475|gb|EAV47102.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
          Length = 503

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG +  + D+GAFV   G  DGL+HI+ L+ +R+   S+++  GD +  ++L FD ++ +
Sbjct: 206 KGIIKNITDYGAFVDLGGI-DGLLHITDLAWKRIKHPSEILNVGDEIEARVLKFDQEKNR 264

Query: 683 IKLSMKVVDQN 693
           + L +K +D++
Sbjct: 265 VSLGLKQLDED 275



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   K++ G+V  + D+GAF+      +GLVH+S++  T +    +  V+ GD V V +L
Sbjct: 285 PVKTKLF-GKVSNLTDYGAFIEIETGIEGLVHVSEMDWTNKNIHPTKAVQLGDEVEVMIL 343

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR ++ L MK    N
Sbjct: 344 EIDEDRRRLSLGMKQCQAN 362


>gi|187478429|ref|YP_786453.1| ribonuclease PH [Bordetella avium 197N]
 gi|115423015|emb|CAJ49545.1| ribonuclease PH [Bordetella avium 197N]
          Length = 244

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 25/207 (12%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R DGR  +T+R  S + G  +   GS L + G+TQ +   ++     E+    L G
Sbjct: 5   DLSLRADGRAVDTLRAFSLKRGFTRYAEGSVLVVAGNTQVLCTASV----LEKVPPFLKG 60

Query: 369 TQRNDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
                    Y  LP AT      E +R G  S R     RL  R++  V    A    TL
Sbjct: 61  KGEGWVTAEYGMLPRATHTRGDREAAR-GKQSGRTQEIQRLIGRSLRAVFDLKALGERTL 119

Query: 424 RIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A++ G+ +A       LM+ G+    PI   VA +++GLV  G  
Sbjct: 120 HLDCDVLQADGGTRCASITGAWVAAADAVALLMERGLLTQNPIRDHVAAVSVGLV--GGR 177

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            ++  D++ +ED     D  V  T +G
Sbjct: 178 AVL--DLNYEEDSACEADVNVIMTGAG 202


>gi|302346323|ref|YP_003814621.1| Tex-like protein N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302150473|gb|ADK96734.1| Tex-like protein N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 910

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQLS   V   + V++    V V++++ D  R +I
Sbjct: 842 GIVTNITNFGAFVDIGVHQDGLVHISQLSDRFVTDPTQVIRLHQHVRVRVVEVDMRRKRI 901

Query: 684 KLSMKVVDQ 692
            LSMK + Q
Sbjct: 902 ALSMKNIKQ 910


>gi|312863267|ref|ZP_07723505.1| Tex-like protein N-terminal domain protein [Streptococcus
           vestibularis F0396]
 gi|311100803|gb|EFQ59008.1| Tex-like protein N-terminal domain protein [Streptococcus
           vestibularis F0396]
          Length = 710

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLD 676
           V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD  TVWV  +D
Sbjct: 634 VGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKVD 693

Query: 677 FDDRGKIKLSM 687
            +   K+ LS+
Sbjct: 694 LEHE-KLNLSL 703


>gi|168335161|ref|ZP_02693268.1| hypothetical protein Epulo_08978 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 131

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I +G V  +  FGAF+    + +GLVHIS ++   +   +D +K GD V VK+L  
Sbjct: 6   EVGQILEGTVTGIKPFGAFISLPNSYNGLVHISHITHGYLENIADAIKIGDVVKVKVLTV 65

Query: 678 D-DRGKIKLSMK 688
           D    KI LS+K
Sbjct: 66  DLTNNKISLSIK 77


>gi|34498501|ref|NP_902716.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
 gi|34104356|gb|AAQ60715.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
          Length = 563

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++
Sbjct: 198 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLAVGDEVEAKVLKFDQEK 256

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 257 NRVSLGLK 264



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 279 PSGTRLF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQVGDEVEVMIL 337

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 338 EIDEDRRRISLGMK 351



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV   G  DGLVH+S LS     + +    K+GD V   +L  D ++ 
Sbjct: 372 KGAIKSITDFGVFVGLPGGIDGLVHLSDLSWNEAGEEAVRKFKKGDEVEAVVLSIDVEKE 431

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 432 RISLGIK---QLEGDPF 445


>gi|56707964|ref|YP_169860.1| ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670435|ref|YP_666992.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134302244|ref|YP_001122213.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|208780450|ref|ZP_03247790.1| ribonuclease PH [Francisella novicida FTG]
 gi|224457045|ref|ZP_03665518.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370452|ref|ZP_04986457.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|254372353|ref|ZP_04987844.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254874766|ref|ZP_05247476.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|61215787|sp|Q5NGI2|RNPH_FRATT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123169418|sp|Q14HY4|RNPH_FRAT1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228282|sp|A4IYU1|RNPH_FRATW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54112559|gb|AAV28913.1| NT02FT0689 [synthetic construct]
 gi|56604456|emb|CAG45491.1| Ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320768|emb|CAL08874.1| Ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134050021|gb|ABO47092.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568695|gb|EDN34349.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|151570082|gb|EDN35736.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3549]
 gi|208743596|gb|EDZ89900.1| ribonuclease PH [Francisella novicida FTG]
 gi|254840765|gb|EET19201.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159150|gb|ADA78541.1| ribonuclease PH [Francisella tularensis subsp. tularensis NE061598]
          Length = 235

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     +   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA               P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|95929460|ref|ZP_01312203.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
 gi|95134576|gb|EAT16232.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
          Length = 240

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R ++ Q G  +   GS L   GDT  +   T+    +E     + G  R
Sbjct: 3   IRADQRQPDQLRPVTFQRGYTRYAEGSVLVSFGDTVVLCNATV----EESVPPFMRGEGR 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT   +   A +R ++G       RL  RA+  V+   A    T+R+ 
Sbjct: 59  GWVTAEYAMLPRATHSRNSREA-ARGKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLD 117

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL +A       GV    P+   +A I++G+V DG   + 
Sbjct: 118 CDVLQADGGTRTASITGAYVALAEAVNGLLRDGVLTVSPLKDSLAAISVGIV-DGQPLL- 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D++  ED    +D  +  T SG
Sbjct: 176 --DLNYGEDSKADVDMNIVMTGSG 197


>gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S]
 gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
 gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S]
 gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
          Length = 260

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R++    G      GS L   G+T+ +   ++    +E       G+  
Sbjct: 3   TREDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASV----EEGVPRWRKGSGL 58

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  S  G    R     RL  R++   +   A    T+ I  
Sbjct: 59  GWLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL+DA              PIS  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCAIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDTG 198


>gi|295401972|ref|ZP_06811934.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109210|ref|YP_003987526.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
 gi|294975974|gb|EFG51590.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214311|gb|ADP72915.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 132

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDVVHVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  G+I LS+K
Sbjct: 64  EKDGRIGLSIK 74


>gi|332522618|ref|ZP_08398870.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313882|gb|EGJ26867.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 710

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD  TVWV  +D   R 
Sbjct: 639 EGTVRNVVDFGAFVDIGVHEDGLIHISEMSQTFVNHPSQVLSVGDLVTVWVSKIDL-ARH 697

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 698 KVNLSL 703


>gi|260763015|ref|ZP_05875347.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260673436|gb|EEX60257.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 117

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 2   MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 61

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 62  KRIGLTMR 69


>gi|251798434|ref|YP_003013165.1| ribonuclease PH [Paenibacillus sp. JDR-2]
 gi|247546060|gb|ACT03079.1| ribonuclease PH [Paenibacillus sp. JDR-2]
          Length = 245

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R ++   G+ +   GS L   G+T+ I   ++    +E+    + G  +
Sbjct: 1   MRTDGRQPNQLRPVTITTGVNKYAEGSVLIEVGETKVICTASV----EERVPPFMKGQGK 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R +   RL  RA+  ++   A    T+ +  
Sbjct: 57  GWITAEYSMLPRATHSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL  A             PI+  +A +++G++++ +    L
Sbjct: 117 DVIQADGGTRTTSITGAFVALCLAVNKLSKTTQFPKYPITAFLASVSVGVIQERE----L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ DED    +D  V  T  G
Sbjct: 173 LDLNYDEDSKAKVDMNVVMTGEG 195


>gi|167626886|ref|YP_001677386.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596887|gb|ABZ86885.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 561

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  ++VK++ FD ++
Sbjct: 199 VLQGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIYVKVIKFDKEK 257

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 258 QRISLGIK 265



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 361 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDDVE 420

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 421 AVLVSVNTDLERIALSMKQLSEDPFKNFI 449



 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + KG V KV D GA V        DG + IS++S E      D + EG  V  ++++ D 
Sbjct: 457 LVKGNVTKVQDNGAVVMLDADNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDA 516

Query: 680 RGK-IKLSMKVVDQNT 694
           + + I LS+K VD++ 
Sbjct: 517 KKRSIALSIKAVDEDN 532


>gi|322437186|ref|YP_004219398.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX9]
 gi|321164913|gb|ADW70618.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX9]
          Length = 671

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + D+GAFV   G  DGL+HI+ +S  R+    D+V  GD + VK+L F
Sbjct: 276 EEGSVLTGTVKNLTDYGAFVDL-GGLDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKF 334

Query: 678 D-DRGKIKLSMK 688
           D D+ ++ L  K
Sbjct: 335 DKDKQRVSLGFK 346



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           I +G+V  + DFGAF+      DGLVH+S LS T+R+   S+V+K+G+ V
Sbjct: 452 IIEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKGEKV 501



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDR 680
           +G+V+ V D+GAFV      +GLVH+S+++ ++R+   S +VK GD V   +L    +DR
Sbjct: 367 RGRVLSVTDYGAFVELEQGIEGLVHVSEMTWSKRMKHPSKLVKPGDEVDTIILSVNPNDR 426

Query: 681 GKIKLSMKVVDQN 693
            +I L MK +  N
Sbjct: 427 -RISLGMKQLQDN 438


>gi|224826389|ref|ZP_03699491.1| ribosomal protein S1 [Lutiella nitroferrum 2002]
 gi|224601490|gb|EEG07671.1| ribosomal protein S1 [Lutiella nitroferrum 2002]
          Length = 567

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++
Sbjct: 198 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLAVGDEVEAKVLKFDQEK 256

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 257 NRVSLGLK 264



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 279 PSGTRLF-GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQVGDEVEVMIL 337

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 338 EIDEDRRRISLGMK 351



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G +  + DFG FV   G  DGLVH+S LS     +  D V   K+GD V   +L  D ++
Sbjct: 373 GAIKSITDFGVFVGLPGGIDGLVHLSDLSWSETGE--DAVRKFKKGDEVEAVVLSIDVEK 430

Query: 681 GKIKLSMKVVDQNTGKPI 698
            +I L +K   Q  G P 
Sbjct: 431 ERISLGIK---QLEGDPF 445


>gi|198283153|ref|YP_002219474.1| 30S ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667071|ref|YP_002425381.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247674|gb|ACH83267.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519284|gb|ACK79870.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 568

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + D+GAF+   G  DGL+HI+ +   RV   S+VV  G  V V +L FD +R
Sbjct: 203 VLEGVVKNLTDYGAFIDLGGI-DGLLHITDMGWRRVKHPSEVVTVGGEVRVLVLKFDRER 261

Query: 681 GKIKLSMKVVDQNTGKPI 698
           G+I L MK + ++  + I
Sbjct: 262 GRISLGMKQLGEDPWRDI 279



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG FV   G  DGL+H+S L+ +R  + +    K+GDT+   +L  D +R +
Sbjct: 378 GQIKSITDFGVFVGLDGGIDGLIHLSDLAWDRTGEEAVRDFKKGDTLDAVVLSIDPERER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGVK 443



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  +I+ G+V  V D+GAFV      +GLVH+S++  T +    +  +  G  V V +L
Sbjct: 284 PEATRIF-GKVTNVTDYGAFVEIEEGVEGLVHVSEIDWTNKNINPAKALHVGQEVEVMIL 342

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 343 DIDEERRRISLGIK 356


>gi|260495755|ref|ZP_05815877.1| ribosomal protein S1 [Fusobacterium sp. 3_1_33]
 gi|260196713|gb|EEW94238.1| ribosomal protein S1 [Fusobacterium sp. 3_1_33]
          Length = 827

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ ++  +G  +   IV    AK N      VK++   L E   A     ++ +  +VN
Sbjct: 514 DKLSDIYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVN 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF-- 677
              +G V KV+ +GAFV      +GLVHIS  S T++    SD VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHP 622

Query: 678 DDRGKIKLSMK 688
           +DR K+KL +K
Sbjct: 623 EDR-KLKLGIK 632



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I    V +V+DFG  V     + G +HIS++S +R+ K SD+ K GD +   ++  
Sbjct: 475 EVGQIVDCVVTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDIYKVGDHIKAVIVSL 533

Query: 678 DD-RGKIKLSMKVVDQN 693
           D+ +  +KLS+K ++++
Sbjct: 534 DEAKRNVKLSIKKLEED 550


>gi|121727134|ref|ZP_01680308.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae V52]
 gi|121630512|gb|EAX62904.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae V52]
          Length = 355

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD DR ++ L +K
Sbjct: 1   LTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLK 59



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 74  PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 132

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 133 DIDEERRRISLGLKQCKAN 151


>gi|313668440|ref|YP_004048724.1| 30S ribosomal protein S1 [Neisseria lactamica ST-640]
 gi|313005902|emb|CBN87358.1| 30S ribosomal protein S1 [Neisseria lactamica 020-06]
          Length = 595

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 229 IIKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 287

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 288 QRVSLGMK 295



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 310 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 368

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 369 EIDENRRRISLGMKQCQAN 387



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 404 GAVKSITDFGIFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 463

Query: 683 IKLSMK 688
           I L +K
Sbjct: 464 ISLGIK 469


>gi|7190413|gb|AAF39231.1| ribosomal protein S1 [Chlamydia muridarum Nigg]
          Length = 536

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  D++  GD V  K++  D D  K+
Sbjct: 450 GIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAKVIKLDPDHKKV 509

Query: 684 KLSMK 688
            LS+K
Sbjct: 510 SLSIK 514



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD- 678
           K  +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    
Sbjct: 272 KRVRGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQK 331

Query: 679 DRGKIKLSMKVVDQN 693
           D GKI L +K  + N
Sbjct: 332 DEGKISLGLKQTEHN 346



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 152 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 206

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 207 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 264



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI
Sbjct: 364 EIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKI 423

Query: 684 KLSMKVVDQN 693
            L +K +  N
Sbjct: 424 TLGVKQLTPN 433


>gi|237743636|ref|ZP_04574117.1| LytB protein [Fusobacterium sp. 7_1]
 gi|229432667|gb|EEO42879.1| LytB protein [Fusobacterium sp. 7_1]
          Length = 827

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ ++  +G  +   IV    AK N      VK++   L E   A     ++ +  +VN
Sbjct: 514 DKLSDIYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVN 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF-- 677
              +G V KV+ +GAFV      +GLVHIS  S T++    SD VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHP 622

Query: 678 DDRGKIKLSMK 688
           +DR K+KL +K
Sbjct: 623 EDR-KLKLGIK 632



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I    V +V+DFG  V     + G +HIS++S +R+ K SD+ K GD +   ++  
Sbjct: 475 EVGQIVDCVVTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDIYKVGDHIKAVIVSL 533

Query: 678 DD-RGKIKLSMKVVDQN 693
           D+ +  +KLS+K ++++
Sbjct: 534 DEAKRNVKLSIKKLEED 550


>gi|229163445|ref|ZP_04291396.1| Ribonuclease PH [Bacillus cereus R309803]
 gi|228620014|gb|EEK76889.1| Ribonuclease PH [Bacillus cereus R309803]
          Length = 245

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYIEDSKADVDMNVIMTGKG 196


>gi|269214552|ref|ZP_06158646.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
 gi|269209601|gb|EEZ76056.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
          Length = 326

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 IIKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261


>gi|255556496|ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
           [Ricinus communis]
 gi|223541597|gb|EEF43146.1| tex protein-relatedtranscription accessory protein, putative
           [Ricinus communis]
          Length = 412

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 262 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 320

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 321 RERGRVSLSTKKLEPTPG 338


>gi|169831661|ref|YP_001717643.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
 gi|226736902|sp|B1I4W9|RNPH_DESAP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169638505|gb|ACA60011.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
          Length = 261

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R +       +   GS+L   GDT+ I   ++    D +    L G  +
Sbjct: 2   IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASI----DNRVPTFLKGAGK 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 +  LP ATG      S  G P  R +   RL  R++  V+   A    T+ +  
Sbjct: 58  GWVTAEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL+DA       GV    P+   VA  ++GL  +G+  +  
Sbjct: 118 DVIQADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLF-EGEAVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +DF V  T +G
Sbjct: 175 -DLCFAEDSAAEVDFNVVMTGTG 196


>gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298484821|ref|ZP_07002921.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 240

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|330508304|ref|YP_004384732.1| S1 RNA binding domain-containing protein [Methanosaeta concilii
           GP-6]
 gi|328929112|gb|AEB68914.1| S1 RNA binding domain protein [Methanosaeta concilii GP-6]
          Length = 713

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH S+L+   V    DVV+    V VK+LD D +R +I
Sbjct: 649 GIVTNVTSFGAFVDVGVHQDGLVHKSELAKSYVPVPGDVVRVRQKVMVKVLDVDLERKRI 708

Query: 684 KLSMK 688
            LSMK
Sbjct: 709 SLSMK 713


>gi|325971203|ref|YP_004247394.1| RNA binding S1 domain protein [Spirochaeta sp. Buddy]
 gi|324026441|gb|ADY13200.1| RNA binding S1 domain protein [Spirochaeta sp. Buddy]
          Length = 571

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           K  V K+  FGAF+      +GL HIS+LS T+RV    +V+  GD V  K+L +D D+ 
Sbjct: 289 KAPVTKITTFGAFIEIEPGIEGLAHISELSWTKRVNNPKEVLDVGDVVEAKVLGYDLDKK 348

Query: 682 KIKLSMKVVDQNTGKPIV 699
           ++ L +K +++N    IV
Sbjct: 349 RVSLGLKQLEENPWDTIV 366



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  + +G V     FGAF+   G  DGL+HI+ +S   V +  D VK+G  V ++L++ 
Sbjct: 198 QIGDVVEGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRLINI 256

Query: 678 D-DRGKIKLSMK 688
           D +  KI LS+K
Sbjct: 257 DPETQKINLSLK 268


>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 242

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +      F      +  ++G   + E  +  + +R I  +   T     T  ++ ++   
Sbjct: 55  ENAEKACFEVIWKPKTGQIG---KVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHD 111

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           DGS     +  +  AL+DAG+P+      I   L  +G  +++L
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLAVAICCCLADNG--YLVL 153


>gi|284043327|ref|YP_003393667.1| ribonuclease PH [Conexibacter woesei DSM 14684]
 gi|283947548|gb|ADB50292.1| ribonuclease PH [Conexibacter woesei DSM 14684]
          Length = 245

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR +E +R +S + G ++   GS+L   G+T+ I   ++    +E     ++G    
Sbjct: 5   RSYGRTAEGLRPVSFEPGFVRSATGSALIAIGETRVICTASV----EESVPRWMTGRGTG 60

Query: 373 DFMMHYNFLPCATGE-----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +TG+     V++ G    R +   RL  R++  V+  +A    T+ +  
Sbjct: 61  WLTAEYGMLPASTGQRKARDVTK-GRADGRTVEIQRLIGRSLRGVVDFSALGERTVYVDC 119

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL  A            +P++  VA ++ G+V    D + L
Sbjct: 120 DVLQADGGTRCASITGGFVALQLACERLVADGLLERLPLTGSVAAVSAGIV----DGVPL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  V  T  G
Sbjct: 176 LDLDYPEDSTAEVDANVVMTGEG 198


>gi|229551621|ref|ZP_04440346.1| RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|258540712|ref|YP_003175211.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           Lc 705]
 gi|229315025|gb|EEN80998.1| RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|257152388|emb|CAR91360.1| RNA binding S1 domain protein [Lactobacillus rhamnosus Lc 705]
          Length = 159

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  +  FGAFV     + GLVHIS++S   V    DV+  G+ V VK+L  
Sbjct: 4   EVGTKVAGKVTGITKFGAFVELGDGKTGLVHISEVSDAYVKDIHDVLHVGEPVTVKVLSI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  QD-GKIGLSIRKAVDK 78


>gi|161579046|ref|NP_296751.2| 30S ribosomal protein S1 [Chlamydia muridarum Nigg]
 gi|270285161|ref|ZP_06194555.1| 30S ribosomal protein S1 [Chlamydia muridarum Nigg]
 gi|270289180|ref|ZP_06195482.1| 30S ribosomal protein S1 [Chlamydia muridarum Weiss]
 gi|301336556|ref|ZP_07224758.1| 30S ribosomal protein S1 [Chlamydia muridarum MopnTet14]
 gi|7404452|sp|P38016|RS1_CHLMU RecName: Full=30S ribosomal protein S1; AltName: Full=70 kDa
           antigen
          Length = 570

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  AK  D++  GD V  K++  D D  K+
Sbjct: 484 GIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAKVIKLDPDHKKV 543

Query: 684 KLSMK 688
            LS+K
Sbjct: 544 SLSIK 548



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V V +L    D G
Sbjct: 309 RGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEG 368

Query: 682 KIKLSMKVVDQN 693
           KI L +K  + N
Sbjct: 369 KISLGLKQTEHN 380



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 584 KVNIDDDGTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           K+N+D    V ++   L E E      E+I  IT    + +  KG V  + DFG F+   
Sbjct: 186 KINVDRRNVV-VSRRELLEAERISKKAELIEQIT----IGERRKGIVKNITDFGVFLDLD 240

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  + N  + I
Sbjct: 241 GI-DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQN 693
           I L +K +  N
Sbjct: 457 ITLGVKQLTPN 467


>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
          Length = 244

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 37/231 (16%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR S  +R ++ ++G+L R  GSS + +G+T+ I V   G  E        S TQ+
Sbjct: 12  LRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTK-ITVAIYGPHE--------STTQK 62

Query: 372 NDF-----MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRI 425
           + F        +     +T E        +       L ++A    +  T  FP + + I
Sbjct: 63  SLFDRASIKCEFAMSSFSTSERKVKSRFDKTAYETSTLIKQAFESTV-LTHLFPRSQIDI 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ +SDG    A +   +LA++DAG+P+   V   +   + +G   +           
Sbjct: 122 YVQVLQSDGGLKSAAINAVTLAMIDAGIPMRDYVCACSATFI-EGSALM----------D 170

Query: 486 LGHMDFKVAGTD---------SGITAMQMDMKIGG-ISENIMVMALQQAKR 526
           L HM+ +  G D          G+ ++ M+ K+   + E+++ MAL   K+
Sbjct: 171 LNHMEERSGGADLLLSIHPQLGGVISINMESKVPQEMFESVLDMALAGCKK 221


>gi|312128053|ref|YP_003992927.1| ribonuclease ph [Caldicellulosiruptor hydrothermalis 108]
 gi|311778072|gb|ADQ07558.1| ribonuclease PH [Caldicellulosiruptor hydrothermalis 108]
          Length = 258

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S +     L+  KRG   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQ 232

Query: 536 SKVLSE 541
            +VL E
Sbjct: 233 KEVLGE 238


>gi|303256837|ref|ZP_07342851.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
 gi|330998916|ref|ZP_08322643.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
 gi|302860328|gb|EFL83405.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
 gi|329576130|gb|EGG57649.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
          Length = 564

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+++G  +  K+L FD ++
Sbjct: 201 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLEQGQEITAKVLKFDQEK 259

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 260 NRVSLGIK 267



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV+ G+ V V +L
Sbjct: 282 PQGTRLF-GKVTNITDYGAFVEIEAGIEGLVHVSEMDWTNKNVDPKKVVQLGEEVEVMVL 340

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 341 EIDEERRRISLGMKQCKPN 359



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KGQ+  + DFG F+   G  DGLVH+S LS TE   +     K+G+ +   +L  D +R 
Sbjct: 375 KGQIKSITDFGVFIGLEGGIDGLVHLSDLSWTEPGEEAVRKYKKGEELEAVVLSIDVERE 434

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q +G P 
Sbjct: 435 RISLGVK---QMSGDPF 448


>gi|188579737|ref|YP_001923182.1| ribonuclease PH [Methylobacterium populi BJ001]
 gi|226736916|sp|B1ZJ73|RNPH_METPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|179343235|gb|ACB78647.1| ribonuclease PH [Methylobacterium populi BJ001]
          Length = 237

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 22/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K G   + L
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYK-GQPVLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D + D       +F V G   GI  +Q   ++   SE   +  L  AK G  +++    
Sbjct: 176 -DYAEDSAAETDANFVVTG-KGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQR 233

Query: 537 KVLS 540
           K ++
Sbjct: 234 KAIA 237


>gi|91204195|emb|CAJ71848.1| strongly similar to ribonuclease PH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 238

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 41/212 (19%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV-DSLSGTQ 370
           +R+D R  + +R ++      + + GS L   G+T+ I   ++     E+YV   +  T 
Sbjct: 1   MRVDNRKYDELRPVTITRNFTKYSAGSVLVESGNTKVICTASI-----EEYVPPHIKNTG 55

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSR--REIGHG----------RLARRAIHPVLPQTAQ 418
                  Y+ LP AT        PSR  RE   G          RL  R++  +   T  
Sbjct: 56  TGWITAEYSLLPGAT--------PSRVPRESTKGKISGRTHEIQRLIGRSLRAICDLTLL 107

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLV 467
              T+ I  ++ ++DG +  A + GS +AL DA             P+   VA I+ G+V
Sbjct: 108 KERTIWIDCDVIQADGGTRTAAITGSYIALADAVQWLLDKNVIKENPLINSVAAISAGIV 167

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            +    I L D+   ED    +D     T SG
Sbjct: 168 NN----IALLDLCYAEDASAQVDMNFVMTGSG 195


>gi|15231368|ref|NP_190207.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314404|ref|NP_001030817.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314427|ref|NP_001030818.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314448|ref|NP_001030819.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|145332769|ref|NP_001078250.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
 gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
 gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
 gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
 gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
 gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
          Length = 239

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIG-----HGRLARRAIHPVLPQTAQFPYTLRIVS 427
           +      F      EV  +  P   +IG     +  + +R I  +   T     T  ++ 
Sbjct: 55  ENAEKACF------EV--IWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVII 106

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++   DGS     +  +  AL+DAG+P+      I   L ++G  +++L
Sbjct: 107 QVVHDDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENG--YLVL 153


>gi|325479338|gb|EGC82434.1| S1 RNA binding domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 426

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++ I  I D+ E   I KG+V  + DFGAFV      DGLVH+S++S + +   ++V+ 
Sbjct: 339 TKQEIMGIDDLKE-GMILKGKVRNITDFGAFVDIGVGIDGLVHVSKISDKFIKNPNEVLT 397

Query: 666 EGDTVWVKLLDFDDRG-KIKLSMKVV 690
               V VK+++ D +  +I LSMK V
Sbjct: 398 NSQIVNVKVIEIDKKKERIGLSMKDV 423


>gi|317501909|ref|ZP_07960093.1| YhgF protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088276|ref|ZP_08337195.1| hypothetical protein HMPREF1025_00778 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896589|gb|EFV18676.1| YhgF protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408520|gb|EGG87986.1| hypothetical protein HMPREF1025_00778 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 717

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D  +
Sbjct: 647 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDRYIKHPLEAVSVGDVVDVKVMSVDMKK 706

Query: 681 GKIKLSMK 688
            +I+L+M+
Sbjct: 707 KRIQLTMR 714


>gi|294140845|ref|YP_003556823.1| 30S ribosomal protein S1 [Shewanella violacea DSS12]
 gi|293327314|dbj|BAJ02045.1| ribosomal protein S1 [Shewanella violacea DSS12]
          Length = 555

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S S AE +A  E ++         +  KG V  + D+GAFV   G  DGL+HI+ ++ 
Sbjct: 174 IESESSAERDALLENLQE-------GQAIKGIVKNLTDYGAFVDLGGV-DGLLHITDMAW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 226 KRVKHPSEIVNVGDEIDVKVLKYDRERTRVSLGLK 260



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGLK 347


>gi|291571476|dbj|BAI93748.1| probable transcription accessory protein [Arthrospira platensis
           NIES-39]
          Length = 718

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I+ ++D+    ++ +G V  V++FGAFV     +DGLVHIS+L+   V     +V+ 
Sbjct: 634 RDDIKEVSDLKPGMEL-EGIVTNVVNFGAFVDVGVHQDGLVHISELADRFVEDPQKIVRV 692

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKV 689
           G  V VK+L+ +++  +I LSM++
Sbjct: 693 GQVVKVKVLEVNEKLNRISLSMRI 716


>gi|260887809|ref|ZP_05899072.1| RNA-binding protein [Selenomonas sputigena ATCC 35185]
 gi|330838704|ref|YP_004413284.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
 gi|260862485|gb|EEX76985.1| RNA-binding protein [Selenomonas sputigena ATCC 35185]
 gi|329746468|gb|AEB99824.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
          Length = 151

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  + +FGAFV     + GLVHIS+++ E V    D +KE D V VK+L  
Sbjct: 4   EVGSIVEGVVTGITNFGAFVELPEGKVGLVHISEVADEYVRDVHDFLKEKDKVKVKVLTI 63

Query: 678 DDRGKIKLSMKVVDQNTGKPI 698
           DDRGKI LS+K + +   KP+
Sbjct: 64  DDRGKIGLSIKQLQEK--KPM 82


>gi|167751224|ref|ZP_02423351.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702]
 gi|167655731|gb|EDR99860.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702]
          Length = 658

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           +V +  FGAF       DGL+HISQ+STER+   + V+  GD V  K+++ + ++ ++ L
Sbjct: 578 IVSITPFGAFAQIIPGVDGLIHISQISTERINNVAQVLSIGDEVKAKIIEINEEQNRVSL 637

Query: 686 SMKVV 690
           S++ +
Sbjct: 638 SIRAL 642



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV + + G+V  +  +G FV   G  DG+VH S+L+  R+    ++VK GD + V +  F
Sbjct: 484 EVGQKFTGEVKSIESYGVFVDL-GGVDGMVHSSELTWNRIKHPREIVKIGDKLDVYVKSF 542

Query: 678 D-DRGKIKLSMKVVDQN 693
           D ++ ++ L  K  + N
Sbjct: 543 DPEKKRVSLGCKKEEDN 559


>gi|170720565|ref|YP_001748253.1| 30S ribosomal protein S1 [Pseudomonas putida W619]
 gi|169758568|gb|ACA71884.1| ribosomal protein S1 [Pseudomonas putida W619]
          Length = 558

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD V V++L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ + +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTRV-QARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCKSN 352


>gi|258508244|ref|YP_003170995.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           GG]
 gi|257148171|emb|CAR87144.1| RNA binding S1 domain protein [Lactobacillus rhamnosus GG]
 gi|259649561|dbj|BAI41723.1| transcription accessory protein [Lactobacillus rhamnosus GG]
          Length = 725

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD  TVW++ +D  +R 
Sbjct: 655 EGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDL-NRE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|163938245|ref|YP_001643129.1| RNA-binding S1 domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131249|ref|ZP_04260155.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST196]
 gi|163860442|gb|ABY41501.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228652240|gb|EEL08171.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST196]
          Length = 722

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G +  V+DFGAFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G+
Sbjct: 654 EGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|114563294|ref|YP_750807.1| 30S ribosomal protein S1 [Shewanella frigidimarina NCIMB 400]
 gi|114334587|gb|ABI71969.1| SSU ribosomal protein S1P [Shewanella frigidimarina NCIMB 400]
          Length = 555

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGLK 347


>gi|302340135|ref|YP_003805341.1| Tex-like protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637320|gb|ADK82747.1| Tex-like protein [Spirochaeta smaragdinae DSM 11293]
          Length = 732

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           EI +  E +RS  D+ E   I  G V  +  FGAFV     +DGLVHIS L+   V   +
Sbjct: 644 EIFSFDEGVRSPEDLRE-GMILPGIVTNITSFGAFVDIGVHQDGLVHISHLADHFVKDPA 702

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +VV+    V VK++  D +R +I LSMK
Sbjct: 703 EVVRLKQQVQVKVISVDLERRRIGLSMK 730


>gi|291532591|emb|CBL05704.1| Transcriptional accessory protein [Megamonas hypermegale ART12/1]
          Length = 728

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ +V  I +G V  + DFG FV       GL+HIS+LS + V    DVV  
Sbjct: 636 RQNIIKLEDI-KVGTIMRGTVRNITDFGVFVDIGIKTAGLIHISELSNKHVKHPLDVVSV 694

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           GD + V ++  D  R +I LS+K V
Sbjct: 695 GDILNVLVISVDAKRNRIGLSLKQV 719


>gi|229009745|ref|ZP_04166968.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides DSM 2048]
 gi|228751540|gb|EEM01343.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides DSM 2048]
          Length = 722

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G +  V+DFGAFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G+
Sbjct: 654 EGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|229083380|ref|ZP_04215730.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
 gi|228699916|gb|EEL52551.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
          Length = 166

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINEHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|77919478|ref|YP_357293.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
 gi|77545561|gb|ABA89123.1| SSU ribosomal protein S1P [Pelobacter carbinolicus DSM 2380]
          Length = 573

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 8/98 (8%)

Query: 603 IEAAREMIR--SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  RE +R  ++  + E  ++  G V  + D+GAF+   G  DGL+HI+ +S  RVA  
Sbjct: 187 LEEQRESLRQDTLETLAEDQEVV-GVVKNLTDYGAFIDLGGI-DGLLHITDMSWGRVAHP 244

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           SDV+  GD + VK+L FD ++ ++ L +K   Q T  P
Sbjct: 245 SDVLAVGDKIKVKVLKFDREKERVSLGLK---QLTADP 279



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  I +GQV  + DFG FV      DGLVHIS LS T+R+   S++ K+GD V   +L+ 
Sbjct: 376 IGTIIEGQVKNITDFGIFVGVDDGIDGLVHISDLSWTKRIKHPSELFKKGDVVKAVVLNI 435

Query: 678 D 678
           D
Sbjct: 436 D 436



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  V DFG F+      +GL+H+S++S E+V    D  K GD +   +L  D +  KI
Sbjct: 469 GKVTSVTDFGIFLEVEEGIEGLIHVSEISKEKVDSPKDFAKVGDNLEAVVLHVDTEDKKI 528

Query: 684 KLSMKVV 690
            LS+K V
Sbjct: 529 ALSIKHV 535



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  N++  G+VV + D+GAFV      +GL+H+S++S T+R+   S ++  GD +   +L
Sbjct: 288 PTGNRV-SGKVVSLTDYGAFVELDEGVEGLIHVSEMSWTKRIKHPSKILNIGDDIESVVL 346

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D    +I L +K +++N
Sbjct: 347 AVDVSNRRISLGLKQIERN 365


>gi|148549148|ref|YP_001269250.1| 30S ribosomal protein S1 [Pseudomonas putida F1]
 gi|161378133|ref|NP_743928.2| 30S ribosomal protein S1 [Pseudomonas putida KT2440]
 gi|167032375|ref|YP_001667606.1| 30S ribosomal protein S1 [Pseudomonas putida GB-1]
 gi|325276950|ref|ZP_08142633.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
 gi|148513206|gb|ABQ80066.1| SSU ribosomal protein S1P [Pseudomonas putida F1]
 gi|166858863|gb|ABY97270.1| ribosomal protein S1 [Pseudomonas putida GB-1]
 gi|313500062|gb|ADR61428.1| RpsA [Pseudomonas putida BIRD-1]
 gi|324097915|gb|EGB96078.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
          Length = 558

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD V V++L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ + +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 275 PEGTRV-QARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGIKQCKSN 352


>gi|331082804|ref|ZP_08331926.1| hypothetical protein HMPREF0992_00850 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400133|gb|EGG79782.1| hypothetical protein HMPREF0992_00850 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 714

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHISQ++   +    + V  GD V V +L  D  +
Sbjct: 644 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTERYIKHPLEAVSVGDVVDVMVLGVDMKK 703

Query: 681 GKIKLSMK 688
            +I L+MK
Sbjct: 704 KRISLTMK 711


>gi|307545306|ref|YP_003897785.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
 gi|307217330|emb|CBV42600.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
          Length = 559

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE  A RE +  +  + E  +I  G V  + D+GAFV   G  DGL+HI+ ++ +R+   
Sbjct: 176 AENSAEREAL--LATLQEGQQII-GIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHP 231

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S++V  GD V VK+L FD +R ++ L +K
Sbjct: 232 SEIVAVGDEVNVKVLKFDRERNRVSLGLK 260



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S +S TE   +     K+GD     +L  D +R +
Sbjct: 369 GTIKSITDFGIFIGLEGGIDGLVHLSDISWTEGGEEAVRQFKKGDEAEAVILSIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K +D +
Sbjct: 429 ISLGIKQLDTD 439


>gi|284048576|ref|YP_003398915.1| hydroxymethylbutenyl pyrophosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952797|gb|ADB47600.1| hydroxymethylbutenyl pyrophosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 680

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G +  ++DFG FV       GLVHIS++S +R  K +D+ K G+   V++K LD +++G
Sbjct: 491 EGTIKSIVDFGMFVEIAPMVQGLVHISEVSWDRSVKPADLYKVGEKINVYIKGLD-EEKG 549

Query: 682 KIKLSMKVVDQN 693
           +I LS+K + ++
Sbjct: 550 RISLSVKALQED 561



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           + + FGA V      +G++HIS+++ +R+ K  DV++ G  V VK+L  D +  KI LS+
Sbjct: 582 RFLPFGAIVKLNDKNEGMIHISEIAEQRIDKPEDVLEIGQEVKVKVLRVDTEHKKIALSI 641

Query: 688 KVVDQNTGK 696
               ++  K
Sbjct: 642 TKAKEDAEK 650


>gi|15615630|ref|NP_243934.1| ribonuclease PH [Bacillus halodurans C-125]
 gi|21759418|sp|Q9K8D8|RNPH_BACHD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|10175690|dbj|BAB06787.1| ribonuclease PH [Bacillus halodurans C-125]
          Length = 257

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 30/259 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +RMD R ++ +R IS ++  L    GS L   G+T+ I   +L    +++    L G  +
Sbjct: 1   MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASL----EDRVPPFLRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  ++        T+ I  
Sbjct: 57  GWITAEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL---MDAGV--------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL   M+  +        PI   +A +++G+  D     IL
Sbjct: 117 DVIQADGGTRTTSITGAFVALSLAMEKALANGAIQEWPIDDFLAAVSVGI--DPKLGAIL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T  G    +Q   +    S N ++  L  A +G       +
Sbjct: 175 -DLCYAEDAQAEVDMNVVMTGKGEYVELQGTGEEATFSHNQLLTILALADKG-------I 226

Query: 536 SKVLSESRLQLGEFTPRVE 554
            +++ E R  LG    RV+
Sbjct: 227 KQLIEEQRNALGAIANRVD 245


>gi|103486980|ref|YP_616541.1| 30S ribosomal protein S1 [Sphingopyxis alaskensis RB2256]
 gi|98977057|gb|ABF53208.1| SSU ribosomal protein S1P [Sphingopyxis alaskensis RB2256]
          Length = 570

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  + D+GAFV   G  DGL+H++ +S +RV   S+++  GDTV V+++  
Sbjct: 198 EEGQIIEGAVKNITDYGAFVDLGGI-DGLLHVTDMSYKRVNHPSEIINIGDTVKVQIIRI 256

Query: 678 D-DRGKIKLSMKVVDQN 693
           + D  +I L MK ++ +
Sbjct: 257 NRDTQRISLGMKQLESD 273


>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
          Length = 245

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++  + +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  +  +   S
Sbjct: 2   LLTSQGLRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAV-YGPHQASKSKMS 60

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
             G   N     Y+    +TGE        R+        R+A+   + +T  +P + + 
Sbjct: 61  NEGVVVN---CQYSMATFSTGERKNRPHGDRKSTEMSLHLRQALTAAI-KTELYPRSQID 116

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++DGS     V  ++LAL+DAG+P+ +  A      +   DD   L D+   E+
Sbjct: 117 VYVEVLQADGSCYCVCVNAATLALIDAGIPL-RAYACACSASMSWRDDAEPLLDVGHVEE 175

Query: 485 HLGHMDFKVAGTDSG--ITAMQMDMKI 509
             G +   VA   S   I  ++M  ++
Sbjct: 176 AAGGVCLTVASLPSTGRIALLEMSHRL 202


>gi|253567905|ref|ZP_04845316.1| RNA-binding protein [Bacteroides sp. 1_1_6]
 gi|251841978|gb|EES70058.1| RNA-binding protein [Bacteroides sp. 1_1_6]
          Length = 710

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +++V     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPTEIVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDTDRKRIQLSMIGVQQD 710


>gi|229055085|ref|ZP_04195516.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH603]
 gi|228721269|gb|EEL72794.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH603]
          Length = 722

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G +  V+DFGAFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G+
Sbjct: 654 EGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 240

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVLKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|300726999|ref|ZP_07060419.1| S1 RNA binding domain protein [Prevotella bryantii B14]
 gi|299775722|gb|EFI72312.1| S1 RNA binding domain protein [Prevotella bryantii B14]
          Length = 703

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQL+ + ++  ++VVK    V VK+L+ D  R +I
Sbjct: 637 GIVTNITNFGAFVDVGVHQDGLVHISQLADKYISDPAEVVKLHQHVRVKVLEVDLRRHRI 696

Query: 684 KLSMK 688
            L+MK
Sbjct: 697 SLTMK 701


>gi|260587033|ref|ZP_05852946.1| protein YhgF [Blautia hansenii DSM 20583]
 gi|260542523|gb|EEX23092.1| protein YhgF [Blautia hansenii DSM 20583]
          Length = 714

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHISQ++   +    + V  GD V V +L  D  +
Sbjct: 644 VLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTERYIKHPLEAVSVGDVVDVMVLGVDMKK 703

Query: 681 GKIKLSMK 688
            +I L+MK
Sbjct: 704 KRISLTMK 711


>gi|221101900|ref|XP_002160475.1| PREDICTED: similar to putative exosome complex exonuclease RRP41
           [Hydra magnipapillata]
          Length = 244

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 18/239 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I+A+ G+  +  GS+   +G+T+ I  V  G  E    V + S T  
Sbjct: 12  LRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASV-YGPHE----VSNRSKTLH 66

Query: 372 NDFMMHYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
           +  +++  F         R   P   R+      L  +     +  T  +P + + I  +
Sbjct: 67  DSTLINCQFSMATFSMSERKNRPKGDRKSTEISMLLEKTFATAI-MTELYPRSQIDIYVQ 125

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + +SDG    A +  ++LAL+DAGVP+   V       V++ +    L+DI+  E+  G 
Sbjct: 126 VIQSDGGVIAACINVATLALIDAGVPMKDFVCACTSSYVQEKN----LTDINHLEESSGS 181

Query: 489 MDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
               +A     + + A Q+  ++    +N+  + L+  K+G L I N + + +    LQ
Sbjct: 182 CQLTLAMLPRTAKVVAFQVSSRLH--LDNLEEL-LKITKQGCLDIYNVLQQAVEADSLQ 237


>gi|192362187|ref|YP_001982579.1| 30S ribosomal protein S1 [Cellvibrio japonicus Ueda107]
 gi|190688352|gb|ACE86030.1| ribosomal protein S1 [Cellvibrio japonicus Ueda107]
          Length = 558

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+    ++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPGEIVNVGDEIEVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ K +V  + D+G F       +GL+H+S++  T +    S VV+ GD + V +L
Sbjct: 275 PEGARV-KAKVTNLTDYGCFAELEEGVEGLIHVSEMDWTNKNIHPSKVVQLGDEIEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   +N
Sbjct: 334 DIDEERRRISLGLKQCQEN 352


>gi|153815704|ref|ZP_01968372.1| hypothetical protein RUMTOR_01941 [Ruminococcus torques ATCC 27756]
 gi|145846945|gb|EDK23863.1| hypothetical protein RUMTOR_01941 [Ruminococcus torques ATCC 27756]
          Length = 717

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D  +
Sbjct: 647 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDRYIKHPLEAVSVGDVVDVKVMSVDMKK 706

Query: 681 GKIKLSMK 688
            +I+L+M+
Sbjct: 707 KRIQLTMR 714


>gi|329725334|gb|EGG61817.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU144]
          Length = 392

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G  V VK+L  D 
Sbjct: 279 DDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDE 338

Query: 679 DRGKIKLSMK 688
           D  +I LS+K
Sbjct: 339 DNERISLSIK 348



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVE 68

Query: 671 -WVKLLDFDDRG 681
            +V  ++FD+  
Sbjct: 69  AYVTKIEFDEEN 80



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           SI D      +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+
Sbjct: 186 SILDSLNEGDVIDGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSVGE 241


>gi|328951770|ref|YP_004369104.1| ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109]
 gi|328452094|gb|AEB07923.1| ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109]
          Length = 615

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  K+  G V  + D+G FV   G  DGL+H++ +S  R+   S+V   GD + VK+L+F
Sbjct: 239 EGGKVVNGVVKNITDYGVFVDLGGI-DGLLHVTDMSWGRIGHPSEVFHVGDPIEVKILNF 297

Query: 678 D-DRGKIKLSMK 688
           D +  K+ L MK
Sbjct: 298 DRENEKVSLGMK 309



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           G+VV + D+GAFV      +GL+H+S++S T++V   S +V   D V  ++LD D + K 
Sbjct: 331 GKVVSLTDYGAFVELEPGVEGLIHVSEMSWTKKVRHPSKIVSVNDIVESEVLDIDPQKKR 390

Query: 683 IKLSMKVVDQN 693
           I LSMK V+ N
Sbjct: 391 ISLSMKHVEPN 401



 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I +G++  + DFG F+      DGLVHIS +S T R+   S++ K+G  V  K+L  D +
Sbjct: 415 IIEGKIKNITDFGIFIGIDEGIDGLVHISDISWTRRIKHPSEIFKKGQEVRAKVLKIDKE 474

Query: 680 RGKIKLSMKVVDQNTGKPI 698
             +  L +K + ++  K I
Sbjct: 475 NERFSLGIKQLAEDPWKTI 493


>gi|325270442|ref|ZP_08137046.1| YhgF like protein [Prevotella multiformis DSM 16608]
 gi|324987238|gb|EGC19217.1| YhgF like protein [Prevotella multiformis DSM 16608]
          Length = 728

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + DFGAFV     +DGLVHIS+L+   VA  + VV+    V V++++ D  R +I
Sbjct: 660 GIVTNITDFGAFVDIGVHQDGLVHISRLADRFVADPTQVVRLHQHVRVRVVEVDMRRKRI 719

Query: 684 KLSMKVVDQ 692
            LSMK + Q
Sbjct: 720 GLSMKNIKQ 728


>gi|312128208|ref|YP_003993082.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778227|gb|ADQ07713.1| RNA binding S1 domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 120

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++  + 
Sbjct: 7   QILEGIVKGITQFGAFVELPSGKVGLVHISEVADEYVEDIKKYLKENQTVKVKVINVKED 66

Query: 681 GKIKLSMK 688
           GKI LS+K
Sbjct: 67  GKISLSIK 74


>gi|297621095|ref|YP_003709232.1| 30S ribosomal protein S1 [Waddlia chondrophila WSU 86-1044]
 gi|297376396|gb|ADI38226.1| 30S ribosomal protein S1 [Waddlia chondrophila WSU 86-1044]
          Length = 568

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           ++ I KG V K+  +GAFV      +GL+H+++LS E   K  DVV  G  V  K++  D
Sbjct: 474 IDSIVKGTVSKITAYGAFVELDNGLEGLIHVTELSDEAFGKVEDVVSVGADVTAKVMKVD 533

Query: 679 -DRGKIKLSMK 688
            +  KI LS+K
Sbjct: 534 PEHKKISLSIK 544



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+NID    V ++   L E E   +    +  + E   I +G V  + DFG F+   G  
Sbjct: 182 KINIDRKNVV-VSRRELLEAERISKKAELLATISE-GDIREGIVKNITDFGVFLDLDGI- 238

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           DGL+HI+ ++ +R+   S++VK GD + V +L  D D+G++ L +K  + N
Sbjct: 239 DGLLHITDMTWKRIRHPSEMVKIGDKLEVMILSVDRDKGRVALGLKQKESN 289



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG++V ++ +GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D G
Sbjct: 305 KGKIVNLLSYGAFIEIEDGIEGLIHVSEMSWVKNVTDPSEVVNKGDEVEAIVLSVQRDEG 364

Query: 682 KIKLSMKVVDQN 693
           KI L +K  ++N
Sbjct: 365 KISLGIKQTERN 376



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+K  K +V  + ++GAFV      +GL+HIS LS  ++V+  S+++K+GD V   +L  
Sbjct: 387 VDKNVKVEVKSLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEILKKGDMVDAVILSV 446

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  KI L +K +  N  + I
Sbjct: 447 DKESKKITLGVKQLGSNPWEDI 468


>gi|291522082|emb|CBK80375.1| Transcriptional accessory protein [Coprococcus catus GD/7]
          Length = 713

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-D 679
           I KG V  V+DFG FV     +DGLVHISQL+ ++ V    ++V  GD V VK++  D  
Sbjct: 643 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQLTNKKFVRHPMEIVSVGDVVEVKVMSVDLA 702

Query: 680 RGKIKLSM 687
           + +I+L+M
Sbjct: 703 KKRIQLTM 710


>gi|229165226|ref|ZP_04293018.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH621]
 gi|228618258|gb|EEK75291.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH621]
          Length = 722

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G +  V+DFGAFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G+
Sbjct: 654 EGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|149675741|dbj|BAF64753.1| ribosomal protein S1 [Shewanella livingstonensis]
          Length = 555

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PESTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKHIHPSKVVNLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D +R +I L +K
Sbjct: 334 DIDEERRRISLGLK 347


>gi|329735185|gb|EGG71477.1| putative ribosomal protein S1 [Staphylococcus epidermidis VCU045]
          Length = 392

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G  V VK+L  D 
Sbjct: 279 DDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDE 338

Query: 679 DRGKIKLSMK 688
           D  +I LS+K
Sbjct: 339 DNERISLSIK 348



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVE 68

Query: 671 -WVKLLDFDDRG 681
            +V  ++FD+  
Sbjct: 69  AYVTKIEFDEEN 80



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           SI D      +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+
Sbjct: 186 SILDSLNEGDVIDGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSVGE 241


>gi|329298228|ref|ZP_08255564.1| 30S ribosomal protein S1 [Plautia stali symbiont]
          Length = 557

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV    ++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPGEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260


>gi|308047849|ref|YP_003911415.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
 gi|307630039|gb|ADN74341.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
          Length = 238

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR ++ VR +S          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRSNGRAADQVRPVSITRNFTAHAEGSVLVAFGNTKVICTASV----EESVPRFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G  S R +   RL  R++   +   A    T+ I 
Sbjct: 57  GWITAEYGMLPRATHSRNDREAAR-GKQSGRTMEIQRLIGRSLRAAVDLEALGEVTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +ALMDA       GV    P+ + +A I++G+V +      
Sbjct: 116 CDVIQADGGTRTAAITGACVALMDAIDHLKAKGVLKVSPLKQQIAAISVGVVGEH----A 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V   + G
Sbjct: 172 VCDLDYVEDSSAETDMNVVMAEDG 195


>gi|242242755|ref|ZP_04797200.1| 30S ribosomal protein S1 [Staphylococcus epidermidis W23144]
 gi|242233891|gb|EES36203.1| 30S ribosomal protein S1 [Staphylococcus epidermidis W23144]
 gi|319400825|gb|EFV89044.1| putative ribosomal protein S1 [Staphylococcus epidermidis FRI909]
          Length = 392

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G  V VK+L  D D 
Sbjct: 281 VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDN 340

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 341 ERISLSIK 348



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVE 68

Query: 671 -WVKLLDFDDRG 681
            +V  ++FD+  
Sbjct: 69  AYVTKIEFDEEN 80



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           SI D      +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+
Sbjct: 186 SILDSLNEGDVIDGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSVGE 241


>gi|160882578|ref|ZP_02063581.1| hypothetical protein BACOVA_00531 [Bacteroides ovatus ATCC 8483]
 gi|156112022|gb|EDO13767.1| hypothetical protein BACOVA_00531 [Bacteroides ovatus ATCC 8483]
          Length = 710

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDYDRKRIQLSMIGVQQD 710


>gi|329894499|ref|ZP_08270313.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC3088]
 gi|328923024|gb|EGG30349.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC3088]
          Length = 558

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + V++L FD DR +
Sbjct: 196 KGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVEVGQEIDVRVLKFDRDRNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           V  + D+G F       +GLVH+S++  T +    S +V+ GD V V +LD D +R +I 
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNVHPSKIVQLGDQVEVMVLDIDEERRRIS 343

Query: 685 LSMKVVDQN 693
           L +K   QN
Sbjct: 344 LGIKQCQQN 352


>gi|327190723|gb|EGE57804.1| putative transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CNPAF512]
          Length = 769

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 639 EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++++ D  R +I LSMK  D +   P
Sbjct: 698 DVVKVRVVEVDAKRKRIALSMKRDDGSAAPP 728


>gi|322420780|ref|YP_004200003.1| 30S ribosomal protein S1 [Geobacter sp. M18]
 gi|320127167|gb|ADW14727.1| ribosomal protein S1 [Geobacter sp. M18]
          Length = 584

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + ++GAFV   G  DGL+H++ +S  R+   S++VK GDT+ V +L +D ++
Sbjct: 219 IVSGVVKNIAEYGAFVDLGGV-DGLLHVTDMSWGRLGHPSEMVKVGDTLNVIVLKYDREK 277

Query: 681 GKIKLSMK 688
           GKI L +K
Sbjct: 278 GKISLGLK 285



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG+V  V DFG FV      +GL+H+S++S E+VA   D    GD +   +L+ D    K
Sbjct: 480 KGRVTSVTDFGIFVEIEEGIEGLIHVSEISYEKVASPKDFANVGDELEAVVLNVDMVEKK 539

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 540 IALSIKAL 547



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G+VV + D+GAF+      +GLVH+S++S T RV   S+++K G+ V   +L  D    +
Sbjct: 307 GKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEILKVGEEVEAVILGVDPANRR 366

Query: 683 IKLSMKVVDQN 693
           I L +K  + N
Sbjct: 367 ISLGLKQTEVN 377



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +GQ+  + DFG F+      DGLVH+S +S T RV    ++  +G TV   +L+ D
Sbjct: 393 EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTRRVKHPGELFTKGQTVQAVVLNID 448


>gi|224143592|ref|XP_002325009.1| predicted protein [Populus trichocarpa]
 gi|222866443|gb|EEF03574.1| predicted protein [Populus trichocarpa]
          Length = 976

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAFV F    DGLVH+S+LS   V     VV  G  V V+L++ + + G
Sbjct: 151 FTGKVRSIQPFGAFVDFGAFTDGLVHVSKLSDSFVKDVGSVVSVGQEVKVRLVEANTETG 210

Query: 682 KIKLSMKVVDQNT 694
           +I L+M+  D  +
Sbjct: 211 RISLTMRENDDTS 223


>gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642]
 gi|75503908|sp|Q4ZZY6|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|63254190|gb|AAY35286.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
 gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
 gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
 gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 240

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|24983268|gb|AAN67392.1|AE016365_7 ribosomal protein S1 [Pseudomonas putida KT2440]
          Length = 576

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD V V++L FD +R +
Sbjct: 214 KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNR 272

Query: 683 IKLSMK 688
           + L +K
Sbjct: 273 VSLGLK 278



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ + +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 293 PEGTRV-QARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVL 351

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 352 DIDEERRRISLGIKQCKSN 370


>gi|260429579|ref|ZP_05783556.1| ribonuclease PH [Citreicella sp. SE45]
 gi|260420202|gb|EEX13455.1| ribonuclease PH [Citreicella sp. SE45]
          Length = 296

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G+ +   GS L   GDTQ I   +L    +E+    + G+  
Sbjct: 60  MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASL----EERVPPFIKGSGL 115

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R  A S ++ G      RL  R++   + + A     + I  
Sbjct: 116 GWVTAEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDC 175

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 176 DVIQADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGI 225


>gi|296136322|ref|YP_003643564.1| ribosomal protein S1 [Thiomonas intermedia K12]
 gi|295796444|gb|ADG31234.1| ribosomal protein S1 [Thiomonas intermedia K12]
          Length = 567

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+VV  G  V  K+L FD ++
Sbjct: 203 LVTGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVVTPGQEVTAKVLKFDAEK 261

Query: 681 GKIKLSMK 688
           G++ L +K
Sbjct: 262 GRVSLGLK 269



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + ++GAFV      +GLVH+S++  T +    S VV+ GD V V++L+ D DR +
Sbjct: 291 GKITNIAEYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVQVLEIDEDRRR 350

Query: 683 IKLSMK 688
           I L MK
Sbjct: 351 ISLGMK 356


>gi|229552040|ref|ZP_04440765.1| S1 domain RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|258539453|ref|YP_003173952.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           Lc 705]
 gi|229314617|gb|EEN80590.1| S1 domain RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|257151129|emb|CAR90101.1| RNA binding S1 domain protein [Lactobacillus rhamnosus Lc 705]
          Length = 725

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD  TVW++ +D  +R 
Sbjct: 655 EGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDL-NRE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|57867003|ref|YP_188621.1| 30S ribosomal protein S1 [Staphylococcus epidermidis RP62A]
 gi|251810898|ref|ZP_04825371.1| 30S ribosomal protein S1 [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876092|ref|ZP_06284959.1| 30S ribosomal protein S1 [Staphylococcus epidermidis SK135]
 gi|293366557|ref|ZP_06613234.1| 30S ribosomal protein S1 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674533|sp|Q5HP69|RS1_STAEQ RecName: Full=30S ribosomal protein S1
 gi|57637661|gb|AAW54449.1| ribosomal protein S1 [Staphylococcus epidermidis RP62A]
 gi|251805578|gb|EES58235.1| 30S ribosomal protein S1 [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295117|gb|EFA87644.1| 30S ribosomal protein S1 [Staphylococcus epidermidis SK135]
 gi|291319326|gb|EFE59695.1| 30S ribosomal protein S1 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737469|gb|EGG73723.1| putative ribosomal protein S1 [Staphylococcus epidermidis VCU028]
          Length = 392

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G  V VK+L  D 
Sbjct: 279 DDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDE 338

Query: 679 DRGKIKLSMK 688
           D  +I LS+K
Sbjct: 339 DNERISLSIK 348



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVE 68

Query: 671 -WVKLLDFDDR 680
            +V  ++FD+ 
Sbjct: 69  AYVTKIEFDEE 79



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           SI D      +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+
Sbjct: 186 SILDSLNEGDVIDGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSVGE 241


>gi|262282223|ref|ZP_06059992.1| general stress protein GSP13 [Streptococcus sp. 2_1_36FAA]
 gi|262262677|gb|EEY81374.1| general stress protein GSP13 [Streptococcus sp. 2_1_36FAA]
          Length = 128

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G +  +  +GAFV       GL+HIS++ T  +    D++  GDTV V++LDFD+   K
Sbjct: 8   RGTITGIQPYGAFVELESGITGLIHISEIKTGYIENIHDLLAIGDTVQVQVLDFDEYTKK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  ASLSMRTLEE 77


>gi|221217470|ref|ZP_03588941.1| ribosomal protein S1 [Borrelia burgdorferi 72a]
 gi|225549866|ref|ZP_03770828.1| ribosomal protein S1 [Borrelia burgdorferi 118a]
 gi|221192748|gb|EEE18964.1| ribosomal protein S1 [Borrelia burgdorferi 72a]
 gi|225369557|gb|EEG99008.1| ribosomal protein S1 [Borrelia burgdorferi 118a]
          Length = 551

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|216264365|ref|ZP_03436357.1| ribosomal protein S1 [Borrelia burgdorferi 156a]
 gi|224532793|ref|ZP_03673409.1| ribosomal protein S1 [Borrelia burgdorferi WI91-23]
 gi|225549220|ref|ZP_03770193.1| ribosomal protein S1 [Borrelia burgdorferi 94a]
 gi|215980838|gb|EEC21645.1| ribosomal protein S1 [Borrelia burgdorferi 156a]
 gi|224512281|gb|EEF82666.1| ribosomal protein S1 [Borrelia burgdorferi WI91-23]
 gi|225370078|gb|EEG99518.1| ribosomal protein S1 [Borrelia burgdorferi 94a]
          Length = 551

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|317122201|ref|YP_004102204.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
 gi|315592181|gb|ADU51477.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
          Length = 120

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  +  FGAFV     R GLVHIS+++   V   SD +  GDTV VK+L  D
Sbjct: 7   VGDIVEGTVDGITGFGAFVKLPDGRTGLVHISEIAHGWVENVSDHLSVGDTVKVKVLRID 66

Query: 679 D-RGKIKLSMKVV 690
           +   KI LS+K  
Sbjct: 67  EANNKIALSIKAT 79


>gi|295099336|emb|CBK88425.1| Transcriptional accessory protein [Eubacterium cylindroides T2-87]
          Length = 713

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFG FV      DGL+HISQ++  ++   S++V  GD   VWV  +D +++ 
Sbjct: 647 QGTVRNVVDFGVFVDIGLHEDGLIHISQMADHKIGHPSEMVSVGDIIDVWVYKID-EEKH 705

Query: 682 KIKLSM 687
           K++L+M
Sbjct: 706 KVQLTM 711


>gi|319937112|ref|ZP_08011519.1| transcription accessory protein [Coprobacillus sp. 29_1]
 gi|319807478|gb|EFW04071.1| transcription accessory protein [Coprobacillus sp. 29_1]
          Length = 715

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVHIS++S +++  T DV   GD + V + D D  + +
Sbjct: 648 QGVVRNVVDFGAFVDIGLKNDGLVHISKMSKQKIKHTLDVCNVGDILDVYVYDIDLKKKR 707

Query: 683 IKLSM 687
           + LS+
Sbjct: 708 VALSL 712


>gi|296448352|ref|ZP_06890241.1| Tex-like protein-like protein [Methylosinus trichosporium OB3b]
 gi|296254144|gb|EFH01282.1| Tex-like protein-like protein [Methylosinus trichosporium OB3b]
          Length = 765

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+ +   + +G V  V  FGAFV     +DGLVHIS +S   V     V K 
Sbjct: 635 QEGVEKISDL-KPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISAMSKTFVKDPRAVAKP 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+L+ D  R ++ L+M++ D
Sbjct: 694 GDIVKVKVLEVDVPRKRVSLTMRLDD 719


>gi|237830305|ref|XP_002364450.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962114|gb|EEA97309.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221487524|gb|EEE25756.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221507320|gb|EEE32924.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1206

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 62/137 (45%), Gaps = 23/137 (16%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           N I +GGK   G  E+ G K         K  S+          MIR          IY+
Sbjct: 202 NSIPLGGKKRDGEAERAGEK---------KAGSAPAHYYGRKGPMIRYA--------IYE 244

Query: 625 GQVVKVMDFGAFVHF---CGARDGLVHISQL--STERVAKTSDVVKEGDTVWVKLLDFDD 679
           G V KV++FG FV      G R GL+H++ +  +  R  +  DVV     V VK+L    
Sbjct: 245 GVVEKVVEFGCFVRLEFDEGTRQGLLHVADMIKTDGRPIQPQDVVHRNMVVKVKILGIAG 304

Query: 680 RGKIKLSMKVVDQNTGK 696
             KI LSM+ VDQ TG+
Sbjct: 305 -TKISLSMREVDQETGE 320


>gi|190890602|ref|YP_001977144.1| transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CIAT 652]
 gi|190695881|gb|ACE89966.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CIAT 652]
          Length = 769

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 639 EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++++ D  R +I LSMK  D +   P
Sbjct: 698 DVVKVRVVEVDAKRKRIALSMKRDDGSAAPP 728


>gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|61216049|sp|Q88BE0|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 240

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|226320681|ref|ZP_03796239.1| ribosomal protein S1 [Borrelia burgdorferi 29805]
 gi|226233897|gb|EEH32620.1| ribosomal protein S1 [Borrelia burgdorferi 29805]
          Length = 540

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 259 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILE 318

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 319 IDKENQKISLGIKQINEN 336



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 156 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 215

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 216 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 249


>gi|308802430|ref|XP_003078528.1| chloroplast polyprotein of elongation factor Ts precursor (ISS)
           [Ostreococcus tauri]
 gi|116056981|emb|CAL51408.1| chloroplast polyprotein of elongation factor Ts precursor (ISS)
           [Ostreococcus tauri]
          Length = 294

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           + G+V ++ D+G FV F   +DGLVHIS+L    V   ++VV +   V V + +  D GK
Sbjct: 76  FSGKVKRIQDYGCFVDFGAKQDGLVHISELKDGFVESVAEVVSQDQDVQVWVKEIKD-GK 134

Query: 683 IKLSMK 688
           I L+MK
Sbjct: 135 ISLTMK 140



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G+V  +  FGAFV      +GL+H+++LS +   K  D VK GD V V ++  +   K+K
Sbjct: 187 GEVKSIQPFGAFVEVAEGCEGLLHVTELSDDFNVKVEDFVKVGDKVTVTIVGIEG-AKVK 245

Query: 685 LSMK 688
           LSMK
Sbjct: 246 LSMK 249


>gi|308801265|ref|XP_003077946.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
           (ISS) [Ostreococcus tauri]
 gi|116056397|emb|CAL52686.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
           (ISS) [Ostreococcus tauri]
          Length = 345

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 25/176 (14%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR+ ++N    +L   R   G FT       +P  Q+R+    GG   RG       ++ 
Sbjct: 77  GRVEVVNRGGVIL---RATPGGFT-----AFLPKSQMRSTRLRGG---RGGSASEADEMK 125

Query: 587 IDDDGTVKIASSSLAEIEAAREMI--RSITDVPEVNKIYKGQVVKVM-----DFGAFVHF 639
             +    K+    L +    R ++  R++     V K+  G+V +V+     DFGAFV  
Sbjct: 126 TLEGQIGKLIDVKLMDCSGNRIVVSERALLQEGAVEKLPAGEVKEVVVTSLSDFGAFVEV 185

Query: 640 CGAR------DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           C  +      +GLVHIS++S  R++   D VK G   +VK+L+ + + G+I  S+K
Sbjct: 186 CDGQGAASGLEGLVHISEISWNRISHPRDAVKVGQREFVKVLEVNGETGRINFSIK 241


>gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
 gi|123602792|sp|Q3K4M0|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL+DA            G P+ + +  +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSTG 197


>gi|53720176|ref|YP_109162.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|53726007|ref|YP_103672.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124386333|ref|YP_001028601.1| ribonuclease PH [Burkholderia mallei NCTC 10229]
 gi|126449191|ref|YP_001081500.1| ribonuclease PH [Burkholderia mallei NCTC 10247]
 gi|126454192|ref|YP_001067258.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|134280511|ref|ZP_01767222.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|162139483|ref|YP_992156.2| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|162210051|ref|YP_334425.2| ribonuclease PH [Burkholderia pseudomallei 1710b]
 gi|167739724|ref|ZP_02412498.1| ribonuclease PH [Burkholderia pseudomallei 14]
 gi|167816928|ref|ZP_02448608.1| ribonuclease PH [Burkholderia pseudomallei 91]
 gi|167825331|ref|ZP_02456802.1| ribonuclease PH [Burkholderia pseudomallei 9]
 gi|167846833|ref|ZP_02472341.1| ribonuclease PH [Burkholderia pseudomallei B7210]
 gi|167895425|ref|ZP_02482827.1| ribonuclease PH [Burkholderia pseudomallei 7894]
 gi|167912075|ref|ZP_02499166.1| ribonuclease PH [Burkholderia pseudomallei 112]
 gi|167920049|ref|ZP_02507140.1| ribonuclease PH [Burkholderia pseudomallei BCC215]
 gi|226193870|ref|ZP_03789472.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242317328|ref|ZP_04816344.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254175672|ref|ZP_04882332.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|254181028|ref|ZP_04887626.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|254191874|ref|ZP_04898377.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|254202370|ref|ZP_04908733.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|254259675|ref|ZP_04950729.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
 gi|254298852|ref|ZP_04966302.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|254356396|ref|ZP_04972672.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|61215844|sp|Q62HZ8|RNPH_BURMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215857|sp|Q63RV5|RNPH_BURPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228270|sp|A3MML4|RNPH_BURM7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228271|sp|A2S9I2|RNPH_BURM9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228272|sp|A3NY37|RNPH_BURP0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52210590|emb|CAH36573.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|52429430|gb|AAU50023.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124294353|gb|ABN03622.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229]
 gi|126227834|gb|ABN91374.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|126242061|gb|ABO05154.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10247]
 gi|134248518|gb|EBA48601.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|147746617|gb|EDK53694.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|148025393|gb|EDK83547.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|157808936|gb|EDO86106.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|157939545|gb|EDO95215.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|160696716|gb|EDP86686.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|184211567|gb|EDU08610.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|225934175|gb|EEH30160.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242140567|gb|EES26969.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254218364|gb|EET07748.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
          Length = 243

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++  R  E   +  
Sbjct: 1   MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+   G 
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF--GG 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
             ++  D+  DED     D  V  T +G
Sbjct: 175 TPVL--DLDYDEDSACDTDMNVVMTGAG 200


>gi|331086265|ref|ZP_08335345.1| hypothetical protein HMPREF0987_01648 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406031|gb|EGG85554.1| hypothetical protein HMPREF0987_01648 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 717

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM + I  TDV E+  + +G V+K     V+DFG FV     +DGLVHISQ++ ++  K 
Sbjct: 626 EMPKPILRTDVLEMKDLTEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKH 685

Query: 661 S-DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             + V  GD V VK++  D  + +I+L+MK
Sbjct: 686 PLEAVSVGDIVDVKVMSVDVQKKRIQLTMK 715


>gi|293369484|ref|ZP_06616065.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292635436|gb|EFF53947.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 710

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDYDRKRIQLSMIGVQQD 710


>gi|260170736|ref|ZP_05757148.1| RNA-binding protein [Bacteroides sp. D2]
 gi|315919072|ref|ZP_07915312.1| RNA-binding protein [Bacteroides sp. D2]
 gi|313692947|gb|EFS29782.1| RNA-binding protein [Bacteroides sp. D2]
          Length = 710

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDYDRKRIQLSMIGVQQD 710


>gi|255654236|ref|ZP_05399645.1| putative RNA-binding protein [Clostridium difficile QCD-23m63]
          Length = 713

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G ++K     V+DFGAFV      DGLVH S++S   V     +V  GD
Sbjct: 632 TDVLKIEDIQEGMILKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGD 691

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK++  D ++ ++ LSMK
Sbjct: 692 IVDVKVIGIDLNKKRVALSMK 712


>gi|195942367|ref|ZP_03087749.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|195942368|ref|ZP_03087750.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|195942738|ref|ZP_03088120.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|195942845|ref|ZP_03088227.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|312149735|gb|ADQ29806.1| ribosomal protein S1 [Borrelia burgdorferi N40]
          Length = 551

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  R++ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHKRNIAFNQVENV 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|218232088|ref|YP_002369288.1| ribonuclease PH [Bacillus cereus B4264]
 gi|226736886|sp|B7HEB3|RNPH_BACC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218160045|gb|ACK60037.1| tRNA nucleotidyltransferase [Bacillus cereus B4264]
          Length = 245

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKIELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|154505455|ref|ZP_02042193.1| hypothetical protein RUMGNA_02984 [Ruminococcus gnavus ATCC 29149]
 gi|153794248|gb|EDN76668.1| hypothetical protein RUMGNA_02984 [Ruminococcus gnavus ATCC 29149]
          Length = 717

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHISQ++ + +    + V  GD V VK++  D  +
Sbjct: 647 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKYIKHPLEAVSVGDIVDVKVMSVDLKK 706

Query: 681 GKIKLSMK 688
            +I+L+M+
Sbjct: 707 KRIQLTMR 714


>gi|110667224|ref|YP_657035.1| translation initiation factor IF-2 subunit alpha [Haloquadratum
           walsbyi DSM 16790]
 gi|109624971|emb|CAJ51384.1| translation initiation factor aIF-2 alpha subunit [Haloquadratum
           walsbyi DSM 16790]
          Length = 266

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVW 671
           T  PE  +   G+V ++ DFG FV      D  GL HIS++++  +    D V+EG TV 
Sbjct: 4   TGWPEPGEPVVGEVDEIADFGVFVDLEEYADKRGLCHISEVASGWIKNVRDHVREGQTVV 63

Query: 672 VKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            K+LD D+  K I LS+K V+++  K  +
Sbjct: 64  AKVLDVDESAKQIDLSIKDVNEHQRKETI 92


>gi|78222320|ref|YP_384067.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15]
 gi|78193575|gb|ABB31342.1| SSU ribosomal protein S1P [Geobacter metallireducens GS-15]
          Length = 401

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G V ++  FGAFV      DGL+HIS+L   +R+   SDV+KEG+TV VK +D  DR 
Sbjct: 291 HTGTVARLAAFGAFVTLAPGIDGLIHISKLGKGKRINHPSDVLKEGETVEVK-VDGVDRE 349

Query: 682 KIKLSMKVVD 691
             +LS+ + +
Sbjct: 350 ARRLSLALAE 359



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V ++ DFGAFV   G  DGL+ +S++   RV    DV+  G+ V V +   D + GKI
Sbjct: 208 GTVTRLADFGAFVDLGGV-DGLIPVSEVGWTRVKHVRDVLSVGEQVSVVIKKIDWEAGKI 266

Query: 684 KLSMK 688
            LS+K
Sbjct: 267 SLSLK 271


>gi|29346648|ref|NP_810151.1| RNA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338545|gb|AAO76345.1| putative RNA binding protein with S1 RNA-binding domain
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 724

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +++V     
Sbjct: 641 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPTEIVSIHQH 699

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 700 VMVRVMNVDTDRKRIQLSMIGVQQD 724


>gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein
           [Blastopirellula marina DSM 3645]
 gi|87286283|gb|EAQ78192.1| ribosomal protein S1-like RNA-binding domain protein
           [Blastopirellula marina DSM 3645]
          Length = 1043

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V+ V+DFGAFV       G+VHIS+L+   V+   +VV  GD  TVWV  +D D R  
Sbjct: 879 GTVLNVVDFGAFVDIGLHDSGMVHISRLANRYVSDPHEVVSVGDVITVWVVEIDKDRR-- 936

Query: 683 IKLSMKVVDQNTGKPI 698
            ++S+  ++  T K I
Sbjct: 937 -RVSLTAIEPGTEKAI 951


>gi|312792846|ref|YP_004025769.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876112|ref|ZP_07736100.1| RNA binding S1 domain protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797098|gb|EFR13439.1| RNA binding S1 domain protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|312179986|gb|ADQ40156.1| RNA binding S1 domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 120

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++  + 
Sbjct: 7   QILEGIVKGITQFGAFVELPDGKVGLVHISEVAEEYVEDIKKYLKENQTVKVKVINVKED 66

Query: 681 GKIKLSMKVVDQ 692
           GKI LS+K  ++
Sbjct: 67  GKISLSIKRANE 78


>gi|325264051|ref|ZP_08130783.1| S1 RNA binding domain protein [Clostridium sp. D5]
 gi|324030535|gb|EGB91818.1| S1 RNA binding domain protein [Clostridium sp. D5]
          Length = 717

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D  +
Sbjct: 647 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDRYIKHPLEAVSVGDIVDVKVMSVDLKK 706

Query: 681 GKIKLSMK 688
            +I+L+M+
Sbjct: 707 KRIQLTMR 714


>gi|294340558|emb|CAZ88943.1| 30S ribosomal protein S1 [Thiomonas sp. 3As]
          Length = 567

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+HI+ L+  RV   S+VV  G  V  K+L FD ++G++
Sbjct: 206 GVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVVTPGQEVTAKVLKFDAEKGRV 264

Query: 684 KLSMK 688
            L +K
Sbjct: 265 SLGLK 269



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + ++GAFV      +GLVH+S++  T +    S VV+ GD V V++L+ D DR +
Sbjct: 291 GKITNIAEYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVQVLEIDEDRRR 350

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 351 ISLGMKQCRAN 361


>gi|297738788|emb|CBI28033.3| unnamed protein product [Vitis vinifera]
          Length = 917

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FGAF+ F    DGLVH+S+LS   V    ++V  G  V V+L++ + + G
Sbjct: 110 FTGKVKSIQPFGAFIDFGAFTDGLVHVSRLSDSYVKDVGNIVSIGQEVKVRLVEANTETG 169

Query: 682 KIKLSMKVVDQNT 694
           +I L+M  V + +
Sbjct: 170 RISLTMHEVKKTS 182


>gi|224131510|ref|XP_002321102.1| predicted protein [Populus trichocarpa]
 gi|222861875|gb|EEE99417.1| predicted protein [Populus trichocarpa]
          Length = 299

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 7/82 (8%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           V +I+ G+V  V D+GAF+H            GLVH+S++S + V    D++  GD V V
Sbjct: 101 VGEIFAGRVGSVEDYGAFIHMRFPDGSLYHLTGLVHVSEVSWDLVQDVRDILNVGDEVTV 160

Query: 673 KLLDFDD-RGKIKLSMKVVDQN 693
           K++D D  + +I LS+K ++++
Sbjct: 161 KIIDIDQGKSRITLSIKQLEED 182


>gi|78223083|ref|YP_384830.1| ribonuclease PH [Geobacter metallireducens GS-15]
 gi|123571779|sp|Q39UG9|RNPH_GEOMG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78194338|gb|ABB32105.1| RNAse PH [Geobacter metallireducens GS-15]
          Length = 238

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 25/203 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR++ ++R I+     ++   G+ L   GDT+ I   ++    +E     L G   
Sbjct: 1   MRSDGREAGSLRGINITRHYIKHAEGAVLVEFGDTKVICTASV----EESVPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP +T   S   A +R +IG       RL  R++  V   T     ++ I 
Sbjct: 57  GWVTAEYSMLPRSTHTRSSREA-ARGKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA       GV    PI + VA +++G+V DG+   I
Sbjct: 116 CDVIQADGGTRTASITGAYVALVDALHLLVERGVLPLLPIKEAVAAVSVGIV-DGN---I 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDS 498
           L D++  ED    +D     T S
Sbjct: 172 LLDLNYVEDSAAEVDMNFVMTSS 194


>gi|313682404|ref|YP_004060142.1| tex-like protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155264|gb|ADR33942.1| Tex-like protein [Sulfuricurvum kujiense DSM 16994]
          Length = 706

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 21/159 (13%)

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV---IGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           V  ES     E   R E+ AI  DQ+  +   +G+G   +  IV +   K   D   T  
Sbjct: 557 VHPESYEAANELMKRYELSAITKDQLPKISQELGIGEATLADIVAEL-RKPGFDPRET-- 613

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                L  I     M RS +TD+ E+ +  I  G V  + DFGAFV      DGL+HISQ
Sbjct: 614 -----LPPI-----MFRSDLTDIKELREGSIVSGVVRNIADFGAFVDIGLKNDGLIHISQ 663

Query: 652 LSTERVAKTSDVVKEGDTV-WVKLLDFDD-RGKIKLSMK 688
           +S +R++   +V+     +  +++++ D  +GK+ LS+K
Sbjct: 664 MSDKRISHPLEVLSVNQQLSRIRVIEVDGVKGKVGLSLK 702


>gi|229175161|ref|ZP_04302677.1| Ribonuclease PH [Bacillus cereus MM3]
 gi|228608297|gb|EEK65603.1| Ribonuclease PH [Bacillus cereus MM3]
          Length = 245

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRERTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYVEDSKADVDMNVIMTGKG 196


>gi|199597509|ref|ZP_03210938.1| Transcriptional accessory protein [Lactobacillus rhamnosus HN001]
 gi|199591532|gb|EDY99609.1| Transcriptional accessory protein [Lactobacillus rhamnosus HN001]
          Length = 725

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD  TVW++ +D  +R 
Sbjct: 655 EGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDL-NRE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|86159780|ref|YP_466565.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496476|sp|Q2IEX1|RNPH_ANADE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85776291|gb|ABC83128.1| RNAse PH [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR    +R I  +  + +   GS L   GDT  +   ++    DE+    + GT  
Sbjct: 1   MRKNGRGPLDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASV----DEKVPPHVYGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +  A   ++ G      RL  RA+   +   A  P T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+            A  P+ + VA +++G+V  G+  +  
Sbjct: 117 DVIQADGGTRTAAITGAYVALVQAVRSIQKRKQLAHDPVKRSVAAVSVGIVA-GEVHL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  DED    +D  V  T  G
Sbjct: 174 -DLDYDEDSTAEVDMNVVATGEG 195


>gi|303231308|ref|ZP_07318044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514038|gb|EFL56044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
          Length = 257

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 22/254 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    +E     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATI----EENVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   VSR  A  +   R +   RL  RA+  V+   A    ++ +  
Sbjct: 57  GWVTAEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+DA           PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAIDFTFGGFGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T +G +  +Q   + G  S + +   L  A+     ++     
Sbjct: 173 LCYEEDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRN 232

Query: 538 VLSESRLQLGEFTP 551
           VL     ++G+  P
Sbjct: 233 VLGSVADKIGKVYP 246


>gi|296452521|ref|ZP_06894218.1| YhgF like protein [Clostridium difficile NAP08]
 gi|296881067|ref|ZP_06905010.1| YhgF like protein [Clostridium difficile NAP07]
 gi|296258626|gb|EFH05524.1| YhgF like protein [Clostridium difficile NAP08]
 gi|296427933|gb|EFH13837.1| YhgF like protein [Clostridium difficile NAP07]
          Length = 723

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G ++K     V+DFGAFV      DGLVH S++S   V     +V  GD
Sbjct: 642 TDVLKIEDIQEGMILKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGD 701

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK++  D ++ ++ LSMK
Sbjct: 702 IVDVKVIGIDLNKKRVALSMK 722


>gi|196234543|ref|ZP_03133365.1| RNA binding S1 domain protein [Chthoniobacter flavus Ellin428]
 gi|196221374|gb|EDY15922.1| RNA binding S1 domain protein [Chthoniobacter flavus Ellin428]
          Length = 770

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVHISQ+S E V   +DV+K G  V   +++ D  R +I
Sbjct: 652 GIVTNVTAFGAFVDIGVHQDGLVHISQMSDEFVKNPADVLKVGQRVQATVMEVDMARKRI 711

Query: 684 KLSMKV 689
            LS+K 
Sbjct: 712 ALSLKT 717


>gi|163748940|ref|ZP_02156191.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
 gi|161331316|gb|EDQ02204.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
          Length = 555

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E++ E    + ++ E   I KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVVSRRAVIESESSAERDALLENLQEGQSI-KGIVKNLTDYGAFVDLGGV-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV   S++V  GD + VK+L +D +R ++ L +K
Sbjct: 223 MAWKRVKHPSEIVNVGDEIDVKVLKYDRERTRVSLGLK 260



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 275 PE-NTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 334 DIDEERRRISLGLKQCKSN 352


>gi|126740326|ref|ZP_01756014.1| S1 RNA binding domain protein [Roseobacter sp. SK209-2-6]
 gi|126718462|gb|EBA15176.1| S1 RNA binding domain protein [Roseobacter sp. SK209-2-6]
          Length = 785

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + +ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 638 EGVEAITDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTG 696

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V V + + D  R +I L+M+
Sbjct: 697 QVVKVTVTEVDVARKRIGLTMR 718


>gi|323456999|gb|EGB12865.1| hypothetical protein AURANDRAFT_19250 [Aureococcus anophagefferens]
          Length = 1074

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           PE++ IY G+V KV +FGAFV   G    R+GLVH+S +S   R    +  V     V+V
Sbjct: 109 PELHAIYAGRVTKVAEFGAFVALEGPTPPREGLVHVSMISGDGRARDAARAVARDQRVFV 168

Query: 673 KLLDFDDRGKIKLSMKVVDQNTG 695
           K+L      ++ LSM+  DQ TG
Sbjct: 169 KVLGVAG-SRVSLSMRECDQATG 190


>gi|85711491|ref|ZP_01042549.1| RNase PH [Idiomarina baltica OS145]
 gi|85694643|gb|EAQ32583.1| RNase PH [Idiomarina baltica OS145]
          Length = 237

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    +      L G  +
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGDTKVLCNATV----EAGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   S+  A   ++ G      RL  R++   +   A    T+ +  
Sbjct: 57  GWVTAEYSMLPRSTHTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+ + VA I++G+V DGD    +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALNYMRASKMVKVNPLKEMVAAISVGIV-DGD---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           SD+   ED     D  V  T++G
Sbjct: 173 SDLEYIEDSQAETDMNVVMTEAG 195


>gi|331005955|ref|ZP_08329301.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
 gi|330420250|gb|EGG94570.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
          Length = 560

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + V++L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVNVGDEIDVRVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           IT+   V    K  V  + D+G F       +GLVH+S++  T +    S VV  GD V 
Sbjct: 270 ITNRYPVGAKAKAVVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVDLGDEVE 329

Query: 672 VKLLDFDD-RGKIKLSMKVVDQN 693
           V +L+ D+ R +I L +K   +N
Sbjct: 330 VMVLEIDEGRRRISLGIKQCQEN 352


>gi|138896231|ref|YP_001126684.1| ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196250189|ref|ZP_03148883.1| ribonuclease PH [Geobacillus sp. G11MC16]
 gi|166228283|sp|A4IRI5|RNPH_GEOTN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134267744|gb|ABO67939.1| Ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196210373|gb|EDY05138.1| ribonuclease PH [Geobacillus sp. G11MC16]
          Length = 255

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 23/253 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR++  +R +  Q   ++   GS L   GDT+ I   T+    +++    + G  +
Sbjct: 1   MRTDGRNNRELRPVHIQPHYIKHAEGSVLIEIGDTRVICTATV----EDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       +  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYGMLPRATEQRNAREASKGKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+ A            +P+   +A  ++G+  D +  +IL
Sbjct: 117 DVIQADGGTRTASITGAYVALVLALSKLVAEGKLESLPVRDFLAATSVGI--DPEHGVIL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T +G    +Q   +    S   +   L+ A+ G   ++   
Sbjct: 175 -DLNYSEDARAKVDMNVVMTGAGQFVEIQGTGEEASFSRAELEELLETAQLGIEQLITIQ 233

Query: 536 SKVLSESRLQLGE 548
            +VL E    +GE
Sbjct: 234 RRVLGEQAALIGE 246


>gi|85374328|ref|YP_458390.1| 30S ribosomal protein S1 [Erythrobacter litoralis HTCC2594]
 gi|84787411|gb|ABC63593.1| ribosomal protein S1 [Erythrobacter litoralis HTCC2594]
          Length = 568

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I D+ E N++  G V  + D+GAFV   G  DGL+H++ +
Sbjct: 175 IVVSRRAVLEETRAEQRSELINDLAE-NQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDM 232

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693
           S +RV   S+V++ G TV V+++  ++   +I L MK ++ +
Sbjct: 233 SYKRVNHPSEVIEIGQTVTVQIIRINEETQRISLGMKQLESD 274


>gi|39995345|ref|NP_951296.1| S1 RNA-binding domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982107|gb|AAR33569.1| S1 RNA binding domain protein [Geobacter sulfurreducens PCA]
          Length = 761

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A R+ +  I D+ E   + +G V  V  FGAFV     +DGLVH+S LS + V   ++ V
Sbjct: 636 AFRDDVTEIGDLKE-GMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAV 694

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688
           + G  V VK+L  D  R +I LS++
Sbjct: 695 RVGQVVQVKVLSVDVQRKRISLSIR 719


>gi|328675533|gb|AEB28208.1| Ribonuclease PH [Francisella cf. novicida 3523]
          Length = 235

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     +   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA               P+   VA +++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|323490580|ref|ZP_08095786.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
 gi|323395846|gb|EGA88686.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
          Length = 721

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+     +DGLVHIS+L    V    +VV  GD  T WV+ ++  D+G
Sbjct: 649 QGTVRNVVDFGAFIDIGVKQDGLVHISKLKKGFVKHPLEVVAVGDIVTAWVEKVE-KDKG 707

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 708 RIALTM 713


>gi|313901428|ref|ZP_07834889.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313468306|gb|EFR63759.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 120

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  +  FGAFV     R GLVHIS+++   V   SD +  GDTV VK+L  D
Sbjct: 7   VGDIVEGTVDGITGFGAFVKLPDGRTGLVHISEVAHGWVENVSDHLSVGDTVKVKILRID 66

Query: 679 D-RGKIKLSMKVV 690
           +   KI LS+K  
Sbjct: 67  EANNKIALSIKAT 79


>gi|298504349|gb|ADI83072.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter sulfurreducens KN400]
          Length = 761

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A R+ +  I D+ E   + +G V  V  FGAFV     +DGLVH+S LS + V   ++ V
Sbjct: 636 AFRDDVTEIGDLKE-GMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAV 694

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688
           + G  V VK+L  D  R +I LS++
Sbjct: 695 RVGQVVQVKVLSVDVQRKRISLSIR 719


>gi|226314534|ref|YP_002774430.1| hypothetical protein BBR47_49490 [Brevibacillus brevis NBRC 100599]
 gi|226097484|dbj|BAH45926.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 137

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 39/71 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  +  FG FV       GLVHISQ++   V   +D    G  V VK+L  
Sbjct: 4   QVGSIIEGKVTAIKPFGMFVAVSETEQGLVHISQVANGFVKDINDHFTVGAPVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
           DD GKI LS++
Sbjct: 64  DDAGKISLSVR 74


>gi|169825693|ref|YP_001695851.1| hypothetical protein Bsph_0083 [Lysinibacillus sphaericus C3-41]
 gi|168990181|gb|ACA37721.1| Hypothetical yabR protein [Lysinibacillus sphaericus C3-41]
          Length = 145

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITTFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|254373825|ref|ZP_04989308.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
 gi|151571546|gb|EDN37200.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
          Length = 235

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++ +   +   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVSGVPKFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA               P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   +  GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|30249909|ref|NP_841979.1| 30S ribosomal protein S1 [Nitrosomonas europaea ATCC 19718]
 gi|30180946|emb|CAD85873.1| Ribosomal protein S1:S1 RNA binding domain [Nitrosomonas europaea
           ATCC 19718]
          Length = 572

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ S+ D      + +G V  + D+GAFV   G  DGL+HI+ L+  RV   ++V+  G
Sbjct: 193 ELLASLQD----GAVVQGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPTEVINVG 247

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V  K+L FD ++ ++ L +K
Sbjct: 248 DEVTAKVLKFDQEKNRVSLGLK 269



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +I+ G+V  + D+GAFV      +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 284 PQGTRIF-GKVTNMTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKIVQLGDEVEVMIL 342

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 343 EIDEDRRRISLGMK 356



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS  +   K     K+GD V   +L  D ++ +
Sbjct: 378 GQIKSITDFGLFIGLPGNIDGLVHLSDLSWNQPGEKAISEFKKGDEVEAVVLSIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|326693063|ref|ZP_08230068.1| transcription accessory protein [Leuconostoc argentinum KCTC 3773]
          Length = 710

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWV 672
           +G V  V+DFGAFV      DGLVHIS+L+  RV   +D+V  GD   VWV
Sbjct: 659 QGTVRNVVDFGAFVDLGVKHDGLVHISRLAKHRVKTPADIVAVGDIVDVWV 709


>gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
 gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
          Length = 262

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 26/222 (11%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ D Q  V  +V + +  R  GR ++ +R I       +   GS L   GDT+ I  V+
Sbjct: 8   LYNDRQFSV--SVQVSQMKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVS 65

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAI 409
           +    +      L G  +      Y  LP ATGE ++  A   ++ G      RL  R++
Sbjct: 66  V----ENGVPRFLKGQGQGWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSL 121

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA------------GVPISK 457
              L  +     TL +  ++ ++DG +  A++ G+ +AL DA            G P+ +
Sbjct: 122 RAALDMSKLGDVTLYVDCDVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQ 181

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            +A  ++G+ + G+  + L  +   ED     D  V  T +G
Sbjct: 182 MIAAASVGMYQ-GEPVLDLDYL---EDSAAETDLNVVMTSAG 219


>gi|302847311|ref|XP_002955190.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
           nagariensis]
 gi|300259482|gb|EFJ43709.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
           nagariensis]
          Length = 431

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V  V  +GAF+   G   GL+H+SQLS +RV     ++ EGD + V +L  D
Sbjct: 309 VGDVVAGVVQSVKPYGAFIDLGGVT-GLLHVSQLSHDRVLVLDKILAEGDKIKVMILSQD 367

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 368 RDRGRVTLSTKKLEPTPG 385


>gi|218886795|ref|YP_002436116.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757749|gb|ACL08648.1| ribosomal protein S1 [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 577

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+ +G+V  ++D+GAFV      +GLVHIS++S T ++   S +V+ GD V V +L
Sbjct: 291 PEGAKL-QGRVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVIL 349

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D D+ +I L MK V  N
Sbjct: 350 GVDQDKKRISLGMKQVKPN 368



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 614 TDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           T VP    V  + +G V  + DFG FV      +GLVH+S++S +++   S++ KEG  +
Sbjct: 458 THVPSRYPVGGLIEGTVTNITDFGLFVEVEEGIEGLVHVSEISQKKIKSPSEMFKEGVVI 517

Query: 671 WVKLL 675
             K++
Sbjct: 518 QAKVI 522



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I +G +  + +FG F+      DGL+H+S +S T+++   ++V K GD V  K+L  D  
Sbjct: 382 ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEVFKTGDVVQAKVLTVDQE 441

Query: 681 G-KIKLSMK 688
             K  L +K
Sbjct: 442 NEKFTLGIK 450


>gi|149911351|ref|ZP_01899971.1| hypothetical protein PE36_23912 [Moritella sp. PE36]
 gi|149805591|gb|EDM65594.1| hypothetical protein PE36_23912 [Moritella sp. PE36]
          Length = 780

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ I  ITD+    ++ +G +  V +FGAFV     +DGLVHIS L+   V    ++VK 
Sbjct: 639 KDGIEKITDLKPGMQL-EGIISNVTNFGAFVDIGVHQDGLVHISALTNRFVKDPHEIVKA 697

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK+ + D  R +I L+M++ D+
Sbjct: 698 GQIVKVKVTEIDIARKRIALTMRLDDE 724


>gi|152974085|ref|YP_001373602.1| RNA-binding S1 domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022837|gb|ABS20607.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 722

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAF+     +DGLVHIS+LS + V    D+V  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDVDMKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|325662483|ref|ZP_08151086.1| hypothetical protein HMPREF0490_01826 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471179|gb|EGC74404.1| hypothetical protein HMPREF0490_01826 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 717

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM + I  TDV E+  + +G V+K     V+DFG FV     +DGLVHISQ++ ++  K 
Sbjct: 626 EMPKPILRTDVLEMKDLTEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKH 685

Query: 661 S-DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             + V  GD V VK++  D  + +I+L+MK
Sbjct: 686 PLEAVSVGDIVDVKVMSVDVQKKRIQLTMK 715


>gi|161551792|ref|YP_148519.2| ribonuclease PH [Geobacillus kaustophilus HTA426]
 gi|61215778|sp|Q5KWI5|RNPH_GEOKA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 256

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 40/263 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATV----EEKVPSFMRGGGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E S+ G  S R +   RL  RA+  V+        T+ I 
Sbjct: 57  GWITAEYGMLPRATEQRNVREASK-GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+ A            +PI   +A  ++G+  D +  +I
Sbjct: 116 CDVIQADGGTRTASITGAYVALVLALAKLVEEGRLEALPIRDFLAATSVGI--DPEHGVI 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L D+  +ED    +D  V  T +G       ++I G  E  +        R  L  L E 
Sbjct: 174 L-DLDYNEDARAKVDMNVVMTGAG-----QFVEIQGTGEEAVF------SRAELDELLEA 221

Query: 536 SKV-----LSESRLQLGEFTPRV 553
           +++     ++  R  LGE+  R+
Sbjct: 222 AQIGIEQLIAVQRRALGEWAARI 244


>gi|54294307|ref|YP_126722.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
 gi|53754139|emb|CAH15612.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
          Length = 558

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ S+ D  E++ I K     + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G 
Sbjct: 185 LLESLHDGQELHGIVK----NLTDYGAFIDLGGI-DGLLHITDISWKRVKHPSEVLSVGQ 239

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK+L FD +R ++ L MK
Sbjct: 240 DVKVKVLSFDSERNRVSLGMK 260



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           + K  +G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ 
Sbjct: 276 IGKRLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEI 335

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +R +I L MK   Q  G P
Sbjct: 336 DEERRRISLGMK---QCVGNP 353


>gi|54297331|ref|YP_123700.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
 gi|161723255|ref|YP_095450.2| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53751116|emb|CAH12527.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
          Length = 558

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ S+ D  E++ I K     + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G 
Sbjct: 185 LLESLHDGQELHGIVK----NLTDYGAFIDLGGI-DGLLHITDISWKRVKHPSEVLSVGQ 239

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK+L FD +R ++ L MK
Sbjct: 240 DVKVKVLSFDSERNRVSLGMK 260



 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           + K  +G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ 
Sbjct: 276 IGKRLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEI 335

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +R +I L MK   Q  G P
Sbjct: 336 DEERRRISLGMK---QCVGNP 353


>gi|303236579|ref|ZP_07323161.1| Tex-like protein N-terminal domain protein [Prevotella disiens
           FB035-09AN]
 gi|302483232|gb|EFL46245.1| Tex-like protein N-terminal domain protein [Prevotella disiens
           FB035-09AN]
          Length = 718

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + SI D+ E  ++  G V  + +FGAFV     +DGLVH+SQL+ + V+  + +V     
Sbjct: 635 VHSIEDLKEGMEL-PGIVTNITNFGAFVDLGVHQDGLVHVSQLANKFVSDPTTIVHLHQH 693

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V V++++ D  R +I LSMK V Q
Sbjct: 694 VRVRVMEVDLRRHRIALSMKGVSQ 717


>gi|169824694|ref|YP_001692305.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
 gi|302380254|ref|ZP_07268726.1| S1 RNA binding domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|303235007|ref|ZP_07321631.1| S1 RNA binding domain protein [Finegoldia magna BVS033A4]
 gi|167831499|dbj|BAG08415.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
 gi|302312037|gb|EFK94046.1| S1 RNA binding domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493862|gb|EFL53644.1| S1 RNA binding domain protein [Finegoldia magna BVS033A4]
          Length = 140

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+V  +  FGAFV       GLVHISQ+S + + K  DV+K  D V  K++  +
Sbjct: 5   VGDIVEGKVTGITKFGAFVECEDGTKGLVHISQISNDYIEKVEDVLKVNDVVKCKVMSIE 64

Query: 679 DRGKIKLSMK 688
           D  KI  S+K
Sbjct: 65  D-NKISFSIK 73


>gi|148358952|ref|YP_001250159.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
 gi|296107001|ref|YP_003618701.1| small subunit ribosomal protein S1 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280725|gb|ABQ54813.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
 gi|295648902|gb|ADG24749.1| small subunit ribosomal protein S1 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 558

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ S+ D  E++ I K     + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G 
Sbjct: 185 LLESLHDGQELHGIVK----NLTDYGAFIDLGGI-DGLLHITDISWKRVKHPSEVLSVGQ 239

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK+L FD +R ++ L MK
Sbjct: 240 DVKVKVLSFDSERNRVSLGMK 260



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           + K  +G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ 
Sbjct: 276 IGKRLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEI 335

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +R +I L MK   Q  G P
Sbjct: 336 DEERRRISLGMK---QCVGNP 353


>gi|257053851|ref|YP_003131684.1| translation initiation factor IF-2 subunit alpha [Halorhabdus
           utahensis DSM 12940]
 gi|256692614|gb|ACV12951.1| translation initiation factor 2, alpha subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 266

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++  G+V ++ DFG FV      D  GL HIS++++  +    D V EG TV  K+
Sbjct: 7   PEPGELVVGRVDEIEDFGVFVDLLEYEDKRGLAHISEVASGWIKNVRDHVNEGQTVVAKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPIV 699
           LD D D  +I LS+K V+ +  K  +
Sbjct: 67  LDVDKDAQQIDLSIKDVNDHQRKDTI 92


>gi|15924466|ref|NP_372000.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927057|ref|NP_374590.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315]
 gi|148267960|ref|YP_001246903.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH9]
 gi|150394024|ref|YP_001316699.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH1]
 gi|156979795|ref|YP_001442054.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315983|ref|ZP_04839196.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006262|ref|ZP_05144863.2| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795469|ref|ZP_05644448.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781]
 gi|258413277|ref|ZP_05681553.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763]
 gi|258420616|ref|ZP_05683558.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258426811|ref|ZP_05688031.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299]
 gi|258447357|ref|ZP_05695501.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300]
 gi|258449758|ref|ZP_05697859.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224]
 gi|258454572|ref|ZP_05702536.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|269203101|ref|YP_003282370.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98]
 gi|282928004|ref|ZP_06335613.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102]
 gi|295407225|ref|ZP_06817025.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819]
 gi|296275327|ref|ZP_06857834.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MR1]
 gi|297244649|ref|ZP_06928532.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796]
 gi|81705665|sp|Q7A5J0|RS1_STAAN RecName: Full=30S ribosomal protein S1
 gi|81781569|sp|Q99U14|RS1_STAAM RecName: Full=30S ribosomal protein S1
 gi|13701275|dbj|BAB42569.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315]
 gi|14247247|dbj|BAB57638.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741029|gb|ABQ49327.1| SSU ribosomal protein S1P [Staphylococcus aureus subsp. aureus JH9]
 gi|149946476|gb|ABR52412.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156721930|dbj|BAF78347.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789441|gb|EEV27781.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781]
 gi|257839841|gb|EEV64309.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763]
 gi|257843564|gb|EEV67971.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257849972|gb|EEV73930.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299]
 gi|257853548|gb|EEV76507.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300]
 gi|257857006|gb|EEV79906.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224]
 gi|257862955|gb|EEV85719.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262075391|gb|ACY11364.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98]
 gi|282590301|gb|EFB95381.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102]
 gi|285817156|gb|ADC37643.1| SSU ribosomal protein S1p [Staphylococcus aureus 04-02981]
 gi|294967938|gb|EFG43967.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819]
 gi|297178679|gb|EFH37925.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796]
 gi|312829866|emb|CBX34708.1| 30S ribosomal protein S1 homolog [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129192|gb|EFT85187.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727548|gb|EGG64004.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21172]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIHGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|297207865|ref|ZP_06924298.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|296887439|gb|EFH26339.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           51811]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    ++V  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEIVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|295111885|emb|CBL28635.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Synergistetes bacterium SGP1]
          Length = 146

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 4/74 (5%)

Query: 627 VVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V ++M +GAFV+     + G++HIS+LS   V K  DV+     V  K++  DD+G+I L
Sbjct: 22  VSQIMPYGAFVNLTESGKRGMIHISELSFNFVKKVEDVLSLQQNVKAKVIKIDDKGRIDL 81

Query: 686 SMKVVDQNTGKPIV 699
           S+K  ++   +P+V
Sbjct: 82  SLKKAEE---RPMV 92


>gi|282916743|ref|ZP_06324501.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139]
 gi|283770548|ref|ZP_06343440.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19]
 gi|282319230|gb|EFB49582.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139]
 gi|283460695|gb|EFC07785.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19]
 gi|298694765|gb|ADI97987.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333086|gb|ADL23279.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|329731355|gb|EGG67721.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21193]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|218508377|ref|ZP_03506255.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli Brasil 5]
          Length = 187

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 57  EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 115

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++++ D  R +I LSMK  D +   P
Sbjct: 116 DVVKVRVVEVDAKRKRIALSMKRDDGSAAPP 146


>gi|146329586|ref|YP_001209043.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
 gi|146233056|gb|ABQ14034.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
          Length = 558

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + K  V  + D+GAF+   G  DGL+HI+ ++ +R+   S+VV  GD V VK+L FD +R
Sbjct: 195 VVKAVVKNLTDYGAFLDLGGV-DGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 ARVSLGLK 261



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 585 VNIDDDGTVKI-------ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VNI D+  VK+       A  SL   +   +    I +   VN    G+V  + D+GAFV
Sbjct: 236 VNIGDEVEVKVLKFDRERARVSLGLKQLGEDPWGDIAERYPVNTQASGRVTNIADYGAFV 295

Query: 638 HFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
                 +GLVH+S++  T +       V  G  V V +LD D +R +I L MK    N
Sbjct: 296 EIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVEVMILDVDSERRRISLGMKQCQSN 353



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KGQ+  + DFG F+   G  DGLVH+S LS  E   +     ++G  V   +L  + DR 
Sbjct: 369 KGQIKSITDFGIFIGLPGGIDGLVHLSDLSWDENNEEAVRAYQKGQEVETIILGIEADRE 428

Query: 682 KIKLSMKVVDQN 693
           +I L +K + Q+
Sbjct: 429 RISLGIKQLSQD 440


>gi|261420366|ref|YP_003254048.1| general stress protein 13 [Geobacillus sp. Y412MC61]
 gi|261376823|gb|ACX79566.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61]
          Length = 124

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 12  IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 71

Query: 682 -KIKLSMKVVD 691
            +  LS+K ++
Sbjct: 72  RRASLSLKALE 82


>gi|82751072|ref|YP_416813.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122]
 gi|82656603|emb|CAI81027.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKVT-GEVQQVEDKQVVVHINGGKFNGIIPISQLSTRHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|21283094|ref|NP_646182.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49486315|ref|YP_043536.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650431|ref|YP_186360.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL]
 gi|87162219|ref|YP_494062.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195210|ref|YP_500011.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221597|ref|YP_001332419.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509643|ref|YP_001575302.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140957|ref|ZP_03565450.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253733277|ref|ZP_04867442.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451134|ref|ZP_05699169.1| ribosomal protein S1 [Staphylococcus aureus A5948]
 gi|262048998|ref|ZP_06021877.1| 30S ribosomal protein S1 [Staphylococcus aureus D30]
 gi|262051645|ref|ZP_06023865.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3]
 gi|282921723|ref|ZP_06329440.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765]
 gi|284024474|ref|ZP_06378872.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 132]
 gi|294848439|ref|ZP_06789185.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754]
 gi|300911950|ref|ZP_07129393.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380941|ref|ZP_07363600.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81649285|sp|Q6G987|RS1_STAAS RecName: Full=30S ribosomal protein S1
 gi|81694467|sp|Q5HFU7|RS1_STAAC RecName: Full=30S ribosomal protein S1
 gi|81762485|sp|Q8NWM8|RS1_STAAW RecName: Full=30S ribosomal protein S1
 gi|21204534|dbj|BAB95230.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244758|emb|CAG43194.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57284617|gb|AAW36711.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL]
 gi|87128193|gb|ABD22707.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202768|gb|ABD30578.1| 30S ribosomal protein S1, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374397|dbj|BAF67657.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368452|gb|ABX29423.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728817|gb|EES97546.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861189|gb|EEV84002.1| ribosomal protein S1 [Staphylococcus aureus A5948]
 gi|259160486|gb|EEW45510.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3]
 gi|259162930|gb|EEW47493.1| 30S ribosomal protein S1 [Staphylococcus aureus D30]
 gi|269940967|emb|CBI49351.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282593985|gb|EFB98974.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765]
 gi|294824465|gb|EFG40888.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754]
 gi|300886196|gb|EFK81398.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751306|gb|ADL65483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340527|gb|EFM06462.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315197777|gb|EFU28111.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140352|gb|EFW32208.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|329314152|gb|AEB88565.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723178|gb|EGG59709.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21189]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|258444809|ref|ZP_05693138.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|282892973|ref|ZP_06301208.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117]
 gi|257850302|gb|EEV74255.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|282764970|gb|EFC05095.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FG F+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIHGKVARLTQFGVFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|297588664|ref|ZP_06947307.1| RNA-binding protein [Finegoldia magna ATCC 53516]
 gi|297574037|gb|EFH92758.1| RNA-binding protein [Finegoldia magna ATCC 53516]
          Length = 140

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+V  V  FGAFV       GLVHISQ+S + + K  DV+K  D V  K++  +
Sbjct: 5   VGDIVEGKVTGVTKFGAFVECEDGTKGLVHISQISNDYIEKVEDVLKVNDVVKCKVMSIE 64

Query: 679 DRGKIKLSMK 688
           D  K+  S+K
Sbjct: 65  D-NKVSFSIK 73


>gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405]
 gi|125712937|gb|ABN51429.1| RNAse PH [Clostridium thermocellum ATCC 27405]
          Length = 263

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R +      ++   GS L   GDT+ I   T+    D++       T  
Sbjct: 2   LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATV----DDKVPPFKKNTGE 57

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y+ LP AT      ++S++    R +EI   RL  RA+  V+         + I
Sbjct: 58  GWVTAEYSMLPRATAARNPRDISKLKLSGRSQEI--QRLIGRALRSVVNLNLLGEREIII 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G  +AL+DA            +P++  +A +++G+V DG++ +
Sbjct: 116 DCDVIQADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIV-DGEEML 174

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED     D  V  T  G
Sbjct: 175 ---DLCYMEDSNAATDMNVVMTSKG 196


>gi|283470687|emb|CAQ49898.1| putative 30S ribosomal protein S1 homolog [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 391

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKVT-GEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|56311965|emb|CAI06610.1| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
          Length = 591

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 23/184 (12%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE---------IMAIPPDQ------IRN 565
           L + K  R+   N++ K L+E  L  G  + RV+         I A  P        +++
Sbjct: 115 LSREKAKRIAAWNDLEKALNEGSLVKGLISGRVKGGLTVMTNSIRAFLPGSLVDMRPVKD 174

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
                GK     V +   K N      V ++  ++ E     E  + + ++ E   + KG
Sbjct: 175 TSPYEGKEFEFKVIKLDRKRN-----NVVVSRRAVLEETMGEEREKLLANLKE-GTVIKG 228

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++ ++ 
Sbjct: 229 IVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVS 287

Query: 685 LSMK 688
           L +K
Sbjct: 288 LGLK 291



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 306 PQGTRLF-GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMIL 364

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 365 EIDEDRRRISLGMK 378



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG F+   G  DGLVH+S LS     + +    K+GD V   +L  D +R 
Sbjct: 399 RGQIKSITDFGVFIGLDGGIDGLVHLSDLSWSDTGEEAVRRFKKGDEVEAVVLAIDVERE 458

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 459 RISLGVK---QLEGDPF 472


>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 9/183 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R DGR +   R I  ++G+     GS++  +G+T+ +  V  G R+       
Sbjct: 3   LLSDEGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAV-FGPRQPMASQHG 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYT- 422
               ++    + Y+    A+ E  R   G    +EI    L+ +        T  +P + 
Sbjct: 62  AVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEIS---LSLKKTFEATILTTLYPRSA 118

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL-VKDGDDFIILSDISG 481
           + I  E+ ++DG      V  ++LAL+DAG+PI      ++ G+ +KD   + +L D++ 
Sbjct: 119 ISIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLL-DLAY 177

Query: 482 DED 484
            E+
Sbjct: 178 SEE 180


>gi|262195603|ref|YP_003266812.1| ribosomal protein S1 [Haliangium ochraceum DSM 14365]
 gi|262078950|gb|ACY14919.1| ribosomal protein S1 [Haliangium ochraceum DSM 14365]
          Length = 608

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-- 678
           + KG+V  + DFG FV      DGLVH+S +S T+RV   S++ ++GD V   LL+ D  
Sbjct: 377 VVKGKVRNIADFGIFVEIEEGIDGLVHVSDMSWTQRVKHPSEMFQKGDEVEAVLLNIDTA 436

Query: 679 DRGKIKLSMKVVDQNT 694
           D  K K+S+ +   NT
Sbjct: 437 DGEKPKISLGIKQLNT 452



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           KI   +V+KV+DFGAFV      +GLVH+S++S E V     V+  G  + V++L  D +
Sbjct: 466 KIVDAKVLKVLDFGAFVEIEKGIEGLVHVSEISDEHVDDPRKVLTPGQELKVQILSVDPQ 525

Query: 681 G-KIKLSMKVVDQNT 694
             KI LS+K  ++ T
Sbjct: 526 ERKIGLSVKSANRAT 540



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + ++GAF+   G  DGL+HI+ +S  RV   S++ + GD V VK+L F+ D  +
Sbjct: 207 EGIVKNLTEYGAFIDLGGI-DGLLHITDMSWGRVNHPSELFQVGDHVRVKVLKFNADTER 265

Query: 683 IKLSMKVVDQN 693
           + L +K + ++
Sbjct: 266 VSLGLKQISED 276


>gi|56421462|ref|YP_148780.1| general stress protein 13 [Geobacillus kaustophilus HTA426]
 gi|56381304|dbj|BAD77212.1| polyribonucleotide nucleotidyltransferase [Geobacillus kaustophilus
           HTA426]
          Length = 121

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 9   IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 68

Query: 682 -KIKLSMKVVD 691
            +  LS+K ++
Sbjct: 69  RRASLSLKALE 79


>gi|319768034|ref|YP_004133535.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
 gi|317112900|gb|ADU95392.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
          Length = 121

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 9   IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 68

Query: 682 -KIKLSMKVVD 691
            +  LS+K ++
Sbjct: 69  RRASLSLKALE 79


>gi|7007440|dbj|BAA90854.1| YdcI [Bacillus halodurans]
          Length = 315

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFG FV     +DGLVHIS+L+   +    +VV  G+  TVWV+ +D   +G
Sbjct: 243 QGTVRNVVDFGVFVDIGVKQDGLVHISKLANRYIKHPLEVVTVGEIVTVWVEDVDI-KKG 301

Query: 682 KIKLSM-KVVDQN 693
           +I L+M +  DQN
Sbjct: 302 RIALTMLRPEDQN 314


>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 9/183 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R DGR +   R I  ++G+     GS++  +G+T+ +  V  G R+       
Sbjct: 3   LLSDEGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAV-FGPRQPMASQHG 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYT- 422
               ++    + Y+    A+ E  R   G    +EI    L+ +        T  +P + 
Sbjct: 62  AVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEIS---LSLKKTFEATILTTLYPRSA 118

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL-VKDGDDFIILSDISG 481
           + I  E+ ++DG      V  ++LAL+DAG+PI      ++ G+ +KD   + +L D++ 
Sbjct: 119 ISIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLL-DLAY 177

Query: 482 DED 484
            E+
Sbjct: 178 SEE 180


>gi|301059712|ref|ZP_07200612.1| Tex-like protein N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300446189|gb|EFK10054.1| Tex-like protein N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 745

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E I  I D+ E      G V  ++ FGAFV     +DGLVH+SQ++   V   ++V+
Sbjct: 625 AFKEGIEKIEDL-EPGMTLPGVVTNIVAFGAFVDIGVHQDGLVHVSQMADHFVKDPNEVI 683

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K    V V++L  D +R +I LS+K  +   GK
Sbjct: 684 KVYQKVSVRVLGVDLERKRISLSLKSENSGAGK 716


>gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ-GEPVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T  G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSEG 197


>gi|282164205|ref|YP_003356590.1| translation initiation factor 2 alpha subunit [Methanocella
           paludicola SANAE]
 gi|282156519|dbj|BAI61607.1| translation initiation factor 2 alpha subunit [Methanocella
           paludicola SANAE]
          Length = 267

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P V ++    V KV+DFGAFV       ++GL+HIS++++  V    D V+EG  +  K+
Sbjct: 6   PNVGELVVCTVTKVVDFGAFVALDEYDNKEGLIHISEVASGWVKYIRDHVREGQKIVCKV 65

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           LD +  RG I LS K V+++
Sbjct: 66  LDVNPKRGHIDLSFKDVNEH 85


>gi|229824286|ref|ZP_04450355.1| hypothetical protein GCWU000282_01591 [Catonella morbi ATCC 51271]
 gi|229786259|gb|EEP22373.1| hypothetical protein GCWU000282_01591 [Catonella morbi ATCC 51271]
          Length = 725

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           + A+ P Q+   + +G   I  I+E  G K  + D     I  +  A I   RE + S+ 
Sbjct: 594 LSALKPAQLAQELEVGQATIVDIIE--GLKHPLHD-----IRDAGPAPI--LREDVMSLD 644

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D+ EV    +G V  V+DFGAFV     +DGL+HIS+LS + +   S+ V  GD + V++
Sbjct: 645 DL-EVGMQLQGVVRNVVDFGAFVDIGVKQDGLIHISKLSKKFIKHPSEAVAVGDILEVEV 703

Query: 675 LDFD-DRGKIKL 685
              D  +G+I L
Sbjct: 704 TVLDKKKGRIGL 715


>gi|56381043|dbj|BAD76951.1| ribonuclease PH [Geobacillus kaustophilus HTA426]
          Length = 257

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 40/263 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 2   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATV----EEKVPSFMRGGGK 57

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E S+ G  S R +   RL  RA+  V+        T+ I 
Sbjct: 58  GWITAEYGMLPRATEQRNVREASK-GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+ A            +PI   +A  ++G+  D +  +I
Sbjct: 117 CDVIQADGGTRTASITGAYVALVLALAKLVEEGRLEALPIRDFLAATSVGI--DPEHGVI 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L D+  +ED    +D  V  T +G       ++I G  E  +        R  L  L E 
Sbjct: 175 L-DLDYNEDARAKVDMNVVMTGAG-----QFVEIQGTGEEAVF------SRAELDELLEA 222

Query: 536 SKV-----LSESRLQLGEFTPRV 553
           +++     ++  R  LGE+  R+
Sbjct: 223 AQIGIEQLIAVQRRALGEWAARI 245


>gi|219684810|ref|ZP_03539752.1| ribosomal protein S1 [Borrelia garinii PBr]
 gi|219671755|gb|EED28810.1| ribosomal protein S1 [Borrelia garinii PBr]
          Length = 551

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQMVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 VDKENQKISLGIKQINEN 347



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  RE+ + I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LEREREIAKRIELVSSYNEEDVVDGVVDRITEYGAIVKIKNFVTGILHKRNIAFNQVENI 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|312110014|ref|YP_003988330.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
 gi|311215115|gb|ADP73719.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+++ +R +  +   ++   GS     GDT+ I   ++    D++    + G  +
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASI----DDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P++  +A  ++G+  D +  IIL
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFAKLVEEKKLDELPVNDFLAATSVGI--DPEHGIIL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T +G
Sbjct: 175 -DLNYTEDARAEVDMNVVMTGAG 196


>gi|30260431|ref|NP_842808.1| S1 RNA-binding domain-containing protein [Bacillus anthracis str.
           Ames]
 gi|47525512|ref|YP_016861.1| s1 RNA-binding domain-containing protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|65317683|ref|ZP_00390642.1| COG2183: Transcriptional accessory protein [Bacillus anthracis str.
           A2012]
 gi|229604808|ref|YP_002864882.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
 gi|30253752|gb|AAP24294.1| S1 RNA binding domain protein [Bacillus anthracis str. Ames]
 gi|47500660|gb|AAT29336.1| S1 RNA binding domain protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|229269216|gb|ACQ50853.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
          Length = 722

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G    V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTARNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LSM
Sbjct: 714 VALSM 718


>gi|254698555|ref|ZP_05160383.1| hypothetical protein Babob28_12852 [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 136

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 21  MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPR 80

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 81  KRIGLTMR 88


>gi|34557672|ref|NP_907487.1| 30S ribosomal protein S1 [Wolinella succinogenes DSM 1740]
 gi|34483389|emb|CAE10387.1| 30S RIBOSOMAL PROTEIN S1 [Wolinella succinogenes]
          Length = 553

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   GA DGL+H      E+  K  +V+KEGD V VK++  D D+
Sbjct: 375 VIKGAVATLTDFGAFIR-IGAIDGLLHNEDAFWEKNGKCKEVMKEGDEVEVKIVKIDKDK 433

Query: 681 GKIKLSMK 688
            ++ LS K
Sbjct: 434 ERVSLSRK 441



 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 28/148 (18%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEI---- 603
           F P+   M+   +  +N+    GK I+  +      +NI  +D T+ ++     E+    
Sbjct: 142 FMPK--FMSALKEDAKNL----GKTIKACI------INIKPEDDTIVVSRKRFFELDNKV 189

Query: 604 --EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A +++ +   +P       G V K+  FG FV   G  +GLVH +++S +     S
Sbjct: 190 KKEGAAKLLEATEPLP-------GVVKKITSFGMFVEVDGV-EGLVHYTEISYKGPVNPS 241

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            + +EGD V VK + +D+  K + LS+K
Sbjct: 242 KIYQEGDQVSVKAIAYDEEKKRLSLSIK 269


>gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121]
          Length = 392

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 603 IEAAREMIR--SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E A   ++  S+ D      + +G V ++ +FGAFV   G  DGLVH+S+LS + V   
Sbjct: 175 VEQAENEVKKASLLDSLNAGDVIEGTVARLTNFGAFVDIGGV-DGLVHVSELSHQHVQSP 233

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +VV  GD V VK+   + D  +I LS+K
Sbjct: 234 EEVVSVGDKVNVKVKSVEKDTERISLSIK 262



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS++  + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  + K ++VVKEGD + 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIE 68

Query: 671 -WVKLLDFDDR 680
            +V  ++FD+ 
Sbjct: 69  AYVTKIEFDEE 79


>gi|308178439|ref|YP_003917845.1| transcriptional accessory protein [Arthrobacter arilaitensis Re117]
 gi|307745902|emb|CBT76874.1| putative transcriptional accessory protein [Arthrobacter
           arilaitensis Re117]
          Length = 809

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E + +I DV P +  I +G V  V  FGAFV     +DGL+H+S +S + ++   ++V 
Sbjct: 655 KEGVETIKDVMPGM--IMEGTVSNVAAFGAFVDLGVHQDGLIHVSAMSNKFISDPREMVS 712

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
            G  V VK+L+ D  R +I L++++ D+
Sbjct: 713 SGQIVKVKVLEVDTVRKRISLTLRLDDE 740


>gi|114330421|ref|YP_746643.1| 30S ribosomal protein S1 [Nitrosomonas eutropha C91]
 gi|114307435|gb|ABI58678.1| SSU ribosomal protein S1P [Nitrosomonas eutropha C91]
          Length = 570

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + D+GAFV   G  DGL+HI+ L+  RV   ++V+  GD V  K+L FD ++
Sbjct: 203 VVQGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPTEVINVGDEVSAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGLK 269



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 284 PQGTRMF-GKVTNMTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKIVQLGDEVEVMIL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD 678
           NK+  GQ+  + DFG F+   G  DGLVH+S LS  +   K     ++GD V   +L  D
Sbjct: 374 NKV-TGQIKSITDFGLFIGLPGNIDGLVHLSDLSWIQTGEKAISEFRKGDEVEAVVLSID 432

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            ++ +I L +K   Q  G P 
Sbjct: 433 VEKERISLGIK---QLEGDPF 450


>gi|52628762|gb|AAU27503.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 579

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ S+ D  E++ I K     + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G 
Sbjct: 206 LLESLHDGQELHGIVK----NLTDYGAFIDLGGI-DGLLHITDISWKRVKHPSEVLSVGQ 260

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK+L FD +R ++ L MK
Sbjct: 261 DVKVKVLSFDSERNRVSLGMK 281



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           + K  +G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ 
Sbjct: 297 IGKRLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEI 356

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +R +I L MK   Q  G P
Sbjct: 357 DEERRRISLGMK---QCVGNP 374


>gi|51598391|ref|YP_072579.1| 30S ribosomal protein S1 [Borrelia garinii PBi]
 gi|51572962|gb|AAU06987.1| ribosomal protein S1 [Borrelia garinii PBi]
          Length = 551

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQMVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 VDKENQKISLGIKQINEN 347


>gi|303244492|ref|ZP_07330827.1| translation initiation factor 2, alpha subunit [Methanothermococcus
           okinawensis IH1]
 gi|302485190|gb|EFL48119.1| translation initiation factor 2, alpha subunit [Methanothermococcus
           okinawensis IH1]
          Length = 281

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D P+  +I  G V+ V  FGAFV       ++G+VHIS++S+  V    D VK+G  V  
Sbjct: 22  DFPDEGEIVIGTVIDVKPFGAFVELLEYPKKEGMVHISEVSSGWVKNIRDFVKKGQRVVA 81

Query: 673 KLLDFDDR-GKIKLSMK-VVDQ 692
           K++  + R G+I LS+K V DQ
Sbjct: 82  KVMRVNKRKGQIDLSLKRVTDQ 103


>gi|297529172|ref|YP_003670447.1| ribonuclease PH [Geobacillus sp. C56-T3]
 gi|297252424|gb|ADI25870.1| ribonuclease PH [Geobacillus sp. C56-T3]
          Length = 460

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 40/263 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATV----EEKVPSFMRGGGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E S+ G  S R +   RL  RA+  V+        T+ I 
Sbjct: 57  GWITAEYGMLPRATEQRNVREASK-GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+ A            +PI   +A  ++G+  D +  +I
Sbjct: 116 CDVIQADGGTRTASITGAYVALVLALAKLVEEGKLEALPIRDFLAATSVGI--DPEHGVI 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L D+  +ED    +D  V  T +G       ++I G  E  +        R  L  L E 
Sbjct: 174 L-DLDYNEDARAKVDMNVVMTGAG-----QFVEIQGTGEEAVF------SRAELDELLEA 221

Query: 536 SKV-----LSESRLQLGEFTPRV 553
           +++     ++  R  LGE+  R+
Sbjct: 222 AQIGIEQLIAVQRCALGEWAARI 244


>gi|320142721|gb|EFW34524.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 398

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 286 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 345

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 346 ENERVSLSIK 355



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 203 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 261

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 262 ERISLSIK 269



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 17  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 75

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 76  AYVTKVEFDEENE 88


>gi|253732118|ref|ZP_04866283.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724165|gb|EES92894.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 398

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 286 NDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 345

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 346 ENERVSLSIK 355



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 203 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 261

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 262 ERISLSIK 269



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 17  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 75

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 76  AYVTKVEFDEENE 88


>gi|295399427|ref|ZP_06809409.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978893|gb|EFG54489.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
          Length = 256

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+++ +R +  +   ++   GS     GDT+ I   ++    D++    + G  +
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASI----DDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P++  +A  ++G+  D +  IIL
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFAKLVEEKKLDELPVNDFLAATSVGI--DPEHGIIL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T +G
Sbjct: 175 -DLNYTEDARAEVDMNVVMTGAG 196


>gi|237721171|ref|ZP_04551652.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450006|gb|EEO55797.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295084558|emb|CBK66081.1| Transcriptional accessory protein [Bacteroides xylanisolvens XB1A]
          Length = 710

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDYDRKRIQLSMIGVPQD 710


>gi|78355554|ref|YP_387003.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217959|gb|ABB37308.1| SSU ribosomal protein S1P [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 574

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE N    G+V  ++D+GAFV      +GLVHIS++S T ++   S +V+ GD V V +L
Sbjct: 288 PE-NARLNGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVIL 346

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D D+ +I L MK V  N
Sbjct: 347 GVDPDKKRISLGMKQVKPN 365



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           V  +  G V  + DFG FV      +GLVH+S++S ++V   S++ KEG T+  K++
Sbjct: 463 VGTLVNGVVTNITDFGLFVEVEEGIEGLVHVSEISQKKVKSPSEMFKEGVTIQAKVI 519



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +G +  + +FG F+      DGL+H+S +S T+++   +++   GDTV  K+L  D
Sbjct: 379 ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVD 436


>gi|298480888|ref|ZP_06999083.1| S1 RNA binding domain protein [Bacteroides sp. D22]
 gi|298272911|gb|EFI14477.1| S1 RNA binding domain protein [Bacteroides sp. D22]
          Length = 710

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDYDRKRIQLSMIGVPQD 710


>gi|229542267|ref|ZP_04431327.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229326687|gb|EEN92362.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 140

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E     +G+V  +  FGAFV       GLVHIS+++   V    D +K GD V VK+L+ 
Sbjct: 4   EAGSKLQGKVTGITHFGAFVELPDGSTGLVHISEVADNYVKDIHDHLKVGDIVEVKVLNV 63

Query: 678 DDRGKIKLSM-KVVDQ 692
           +  GKI LS+ K  DQ
Sbjct: 64  EKDGKIGLSIRKAKDQ 79


>gi|256425255|ref|YP_003125908.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040163|gb|ACU63707.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
          Length = 760

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHIS LS   ++  ++ VK    V V +L+ D  R +I
Sbjct: 642 GVVTNITNFGAFVDIGVKQDGLVHISHLSNRFISNPNEAVKLNQKVTVTVLEVDPSRKRI 701

Query: 684 KLSMK 688
            LSMK
Sbjct: 702 SLSMK 706


>gi|226322502|ref|ZP_03798020.1| hypothetical protein COPCOM_00273 [Coprococcus comes ATCC 27758]
 gi|225209119|gb|EEG91473.1| hypothetical protein COPCOM_00273 [Coprococcus comes ATCC 27758]
          Length = 629

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D  +
Sbjct: 559 ILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDRFIKHPLEAVSVGDVVDVKVMSVDLQK 618

Query: 681 GKIKLSMK 688
            +I+L+M+
Sbjct: 619 KRIQLTMR 626


>gi|219685299|ref|ZP_03540118.1| ribosomal protein S1 [Borrelia garinii Far04]
 gi|219673072|gb|EED30092.1| ribosomal protein S1 [Borrelia garinii Far04]
          Length = 518

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQMVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 VDKENQKISLGIKQINEN 347


>gi|225432062|ref|XP_002280604.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083203|emb|CBI22839.3| unnamed protein product [Vitis vinifera]
          Length = 410

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GD + V +L  D
Sbjct: 259 IGSVVTGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHD 317

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 318 RERGRVSLSTKKLEPTPG 335


>gi|161350051|ref|YP_157511.2| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
          Length = 569

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 23/184 (12%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE---------IMAIPPDQ------IRN 565
           L + K  R+   N++ K L+E  L  G  + RV+         I A  P        +++
Sbjct: 93  LSREKAKRIAAWNDLEKALNEGSLVKGLISGRVKGGLTVMTNSIRAFLPGSLVDMRPVKD 152

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
                GK     V +   K N      V ++  ++ E     E  + + ++ E   + KG
Sbjct: 153 TSPYEGKEFEFKVIKLDRKRN-----NVVVSRRAVLEETMGEEREKLLANLKE-GTVIKG 206

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++ ++ 
Sbjct: 207 IVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVS 265

Query: 685 LSMK 688
           L +K
Sbjct: 266 LGLK 269



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 284 PQGTRLF-GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMIL 342

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 343 EIDEDRRRISLGMK 356



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +GQ+  + DFG F+   G  DGLVH+S LS     + +    K+GD V   +L  D +R 
Sbjct: 377 RGQIKSITDFGVFIGLDGGIDGLVHLSDLSWSDTGEEAVRRFKKGDEVEAVVLAIDVERE 436

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 437 RISLGVK---QLEGDPF 450


>gi|255635364|gb|ACU18035.1| unknown [Glycine max]
          Length = 412

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV   S V++ GD + V +L  D
Sbjct: 261 IGSVVTGSVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVTDISTVLQPGDILKVMILSHD 319

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 320 RERGRVSLSTKKLEPTPG 337


>gi|218677795|ref|ZP_03525692.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CIAT 894]
          Length = 195

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 99  EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 157

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++++ D  R +I LSMK  D +   P
Sbjct: 158 DVVKVRVVEVDAKRKRIALSMKRDDGSAAPP 188


>gi|199598788|ref|ZP_03212200.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|258509512|ref|YP_003172263.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           GG]
 gi|199590293|gb|EDY98387.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|257149439|emb|CAR88412.1| RNA binding S1 domain protein [Lactobacillus rhamnosus GG]
 gi|259650780|dbj|BAI42942.1| RNA binding protein [Lactobacillus rhamnosus GG]
          Length = 159

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+     G+V  +  FGAFV     + GLVHIS++S   V    DV+  G+ V VK+L  
Sbjct: 4   EIGTKVAGKVTGITKFGAFVELGDGKTGLVHISEVSDAYVKDIHDVLHVGEPVTVKVLSI 63

Query: 678 DDRGKIKLSM-KVVDQ 692
            D GKI LS+ K VD+
Sbjct: 64  QD-GKIGLSIRKAVDK 78


>gi|288799884|ref|ZP_06405343.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333132|gb|EFC71611.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 713

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G +  + +FG FV      DGLVHISQ++   ++  +DVVK    V VK+++ D  R
Sbjct: 640 VLPGIITNITNFGVFVDIGVHNDGLVHISQITNRYISSPTDVVKLHQHVQVKVIEVDLQR 699

Query: 681 GKIKLSMKV 689
            +I LSM++
Sbjct: 700 KRIALSMRL 708


>gi|282880197|ref|ZP_06288916.1| 30S ribosomal protein S1 [Prevotella timonensis CRIS 5C-B1]
 gi|281305917|gb|EFA97958.1| 30S ribosomal protein S1 [Prevotella timonensis CRIS 5C-B1]
          Length = 591

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA ++ I S     E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 197 AELEAQKKEIISKL---EKGQILEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV   + + V +LDFDD  K I L +K
Sbjct: 253 HEVVSLDEKIHVVILDFDDEKKRIALGLK 281



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +  GD V   +L  D  DR
Sbjct: 302 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDREDR 361

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 362 -KMSLGIK 368


>gi|83814780|ref|YP_445904.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855]
 gi|83756174|gb|ABC44287.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855]
          Length = 871

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G V  ++DFG F+   G  DGL+HI+ LS  RV+  S+VV+    + V +LD+
Sbjct: 362 EVGQVLEGTVKNIVDFGVFIDLGGV-DGLLHITDLSWGRVSHPSEVVELDQELEVVVLDY 420

Query: 678 -DDRGKIKLSMK 688
            ++R +I L +K
Sbjct: 421 EEERQRISLGLK 432



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + +G+VV + ++GAFV      +GLVHIS++S T  +   S +V  G  V VK+L+ D +
Sbjct: 451 VVEGKVVSITNYGAFVEIEKGIEGLVHISEMSWTRHIEHPSQMVSLGQVVDVKILNIDQE 510

Query: 680 RGKIKLSMK 688
             KI L MK
Sbjct: 511 ERKISLGMK 519



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           I+D      +  G V  + +FG FV      DGLVH+S LS T+++    D+V E   + 
Sbjct: 529 ISDRYPAGTVLTGTVRNITNFGVFVEIEPGIDGLVHVSDLSWTKKIRHPGDMVDEEQELD 588

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           V +L+ D +R +I L  K V  N
Sbjct: 589 VVILNIDEERRRISLGHKQVKTN 611


>gi|303228489|ref|ZP_07315320.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516847|gb|EFL58758.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 725

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  + KG V  V+DFGAF+ F    +GL+H S+L T +    SDV+  
Sbjct: 635 RKHVVSLEDI-KVGTVVKGTVHNVVDFGAFIDFGLKTNGLLHRSELCTAK-QHPSDVLAV 692

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD +  +++  D  R +I LS+K
Sbjct: 693 GDIIEAEIISVDVKRNRIGLSVK 715


>gi|297568691|ref|YP_003690035.1| RNA binding S1 domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924606|gb|ADH85416.1| RNA binding S1 domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 417

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE ++ ++G+V ++MDFGAFV      DGLVHIS+L    R+    +VV+ G+T+ V++ 
Sbjct: 273 PEGSR-HQGKVARLMDFGAFVTLAPGIDGLVHISKLGAGRRINHPREVVQPGETLEVEIE 331

Query: 676 DFD-DRGKIKLSM 687
             D +R ++ LS+
Sbjct: 332 AIDSERRRLSLSV 344


>gi|209548145|ref|YP_002280062.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533901|gb|ACI53836.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 769

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 639 EGVNEISDL-KPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++++ D  R +I LSMK  D +   P
Sbjct: 698 DVVKVRVVEVDAKRKRIALSMKRDDGSAAPP 728


>gi|323439521|gb|EGA97242.1| 30S ribosomal protein S1 [Staphylococcus aureus O11]
 gi|323442240|gb|EGA99871.1| 30S ribosomal protein S1 [Staphylococcus aureus O46]
          Length = 391

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGVVVRMANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|294787731|ref|ZP_06752975.1| ribosomal protein S1 [Simonsiella muelleri ATCC 29453]
 gi|294484024|gb|EFG31707.1| ribosomal protein S1 [Simonsiella muelleri ATCC 29453]
          Length = 582

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 218 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLRFDQDK 276

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 277 QRVSLGLK 284



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 299 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 357

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 358 DIDEDKRRISLGMKQCQSN 376



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ 
Sbjct: 392 KGAVKSITDFGVFVGLPGNIDGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKE 451

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 452 RISLGIK 458


>gi|256028050|ref|ZP_05441884.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium sp. D11]
 gi|289765993|ref|ZP_06525371.1| LytB protein [Fusobacterium sp. D11]
 gi|289717548|gb|EFD81560.1| LytB protein [Fusobacterium sp. D11]
          Length = 827

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           +VN   +G V KV+ +GAFV      +GLVHIS  S T++    SD VKEG+ V V++ D
Sbjct: 560 KVNDEVEGTVTKVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITD 619

Query: 677 F--DDRGKIKLSMK 688
              +DR K+KL +K
Sbjct: 620 LHPEDR-KLKLGIK 632



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I    V +V+DFG  V     + G +HIS++S +R+ K SD+ K GD +   ++  
Sbjct: 475 EVGQIVDCVVTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDIYKVGDHIKAVIVSL 533

Query: 678 DD-RGKIKLSMKVVDQN 693
           D+ +  +KLS+K ++++
Sbjct: 534 DEAKRNVKLSIKKLEED 550


>gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
 gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
          Length = 254

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+ + +RDI    G  Q   GS L   G+T+ +   ++     E      SG+  
Sbjct: 2   LRTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASV----TEGVPRWRSGSGL 57

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R     RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL DA              P+S  ++ +++G+V    D  +
Sbjct: 118 DVIQADGGTRTAAITGAYVALADAVTWLGAAGRLADPQPLSCAISAVSVGVV----DGRV 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 174 RLDLPYEEDSRAEVDMNVVATDAG 197


>gi|25010386|ref|NP_734781.1| hypothetical protein gbs0312 [Streptococcus agalactiae NEM316]
 gi|23094738|emb|CAD45957.1| unknown [Streptococcus agalactiae NEM316]
 gi|319744294|gb|EFV96658.1| S1 RNA binding domain protein [Streptococcus agalactiae ATCC 13813]
          Length = 118

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG V  +  +GAFV     R GL+HIS++ T  +    DV+  GD V+V+++D D+   K
Sbjct: 8   KGTVTGIRPYGAFVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQK 67

Query: 683 IKLSMKVVDQ 692
             LS++ +++
Sbjct: 68  ASLSLRTLEE 77


>gi|22536507|ref|NP_687358.1| hypothetical protein SAG0324 [Streptococcus agalactiae 2603V/R]
 gi|76788688|ref|YP_329046.1| hypothetical protein SAK_0394 [Streptococcus agalactiae A909]
 gi|76797810|ref|ZP_00780075.1| general stress protein GSP13 [Streptococcus agalactiae 18RS21]
 gi|77405008|ref|ZP_00782109.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
 gi|77408085|ref|ZP_00784832.1| S1 RNA-binding domain protein [Streptococcus agalactiae COH1]
 gi|77410640|ref|ZP_00787000.1| S1 RNA-binding domain protein [Streptococcus agalactiae CJB111]
 gi|77413319|ref|ZP_00789514.1| S1 RNA-binding domain protein [Streptococcus agalactiae 515]
 gi|22533339|gb|AAM99230.1|AE014206_10 general stress protein, putative [Streptococcus agalactiae 2603V/R]
 gi|76563745|gb|ABA46329.1| general stress protein, putative [Streptococcus agalactiae A909]
 gi|76586824|gb|EAO63317.1| general stress protein GSP13 [Streptococcus agalactiae 18RS21]
 gi|77160633|gb|EAO71749.1| S1 RNA-binding domain protein [Streptococcus agalactiae 515]
 gi|77163355|gb|EAO74306.1| S1 RNA-binding domain protein [Streptococcus agalactiae CJB111]
 gi|77173269|gb|EAO76391.1| S1 RNA-binding domain protein [Streptococcus agalactiae COH1]
 gi|77176447|gb|EAO79215.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
          Length = 124

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG V  +  +GAFV     R GL+HIS++ T  +    DV+  GD V+V+++D D+   K
Sbjct: 14  KGTVTGIRPYGAFVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQK 73

Query: 683 IKLSMKVVDQ 692
             LS++ +++
Sbjct: 74  ASLSLRTLEE 83


>gi|255692061|ref|ZP_05415736.1| protein YhgF [Bacteroides finegoldii DSM 17565]
 gi|260622311|gb|EEX45182.1| protein YhgF [Bacteroides finegoldii DSM 17565]
          Length = 710

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +++V     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPTEIVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDTDRKRIQLSMIGVPQD 710


>gi|227488224|ref|ZP_03918540.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091794|gb|EEI27106.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 237

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 18/203 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R DGR ++ +R++           GS L   G T+ +   ++         DS 
Sbjct: 1   MSETFTRADGRATDELREVKITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT E     S  G    R     RL  R++   +  T    YT
Sbjct: 61  EGW----LTAEYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISK------PVAGIAMGLVKDGDDFIIL 476
           + +  ++ ++DG +  A++ G+ +AL DA   I K      PVA I++GL+ DG   +  
Sbjct: 117 IALDCDVLQADGGTRTASITGAYVALADALASIDKTDALLPPVAAISVGLI-DGHPCL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +   ++G
Sbjct: 174 -DLPYEEDSRAEVDMNIIMKENG 195


>gi|302871277|ref|YP_003839913.1| RNA binding S1 domain protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574136|gb|ADL41927.1| RNA binding S1 domain protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 120

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I +G V  +  FGAFV       GLVHIS+++ E V      +KE  TV VK+++  + 
Sbjct: 7   QILEGVVKGITQFGAFVELPNGSVGLVHISEVAEEYVEDIKKYLKENQTVKVKVINVKED 66

Query: 681 GKIKLSMK 688
           GKI LS+K
Sbjct: 67  GKISLSIK 74


>gi|256111184|ref|ZP_05452220.1| transcription accessory protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265992696|ref|ZP_06105253.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
 gi|262763566|gb|EEZ09598.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
          Length = 713

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R
Sbjct: 598 MLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVLR 657

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 658 KRIGLTMR 665


>gi|288802812|ref|ZP_06408249.1| S1 RNA binding domain protein [Prevotella melaninogenica D18]
 gi|288334629|gb|EFC73067.1| S1 RNA binding domain protein [Prevotella melaninogenica D18]
          Length = 696

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQLS   V   + V++    V V++++ D  R +I
Sbjct: 628 GIVTNITNFGAFVDIGVHQDGLVHISQLSDRFVTDPTQVIRLHQHVRVRVVEVDMRRKRI 687

Query: 684 KLSMKVVDQ 692
            LSMK + Q
Sbjct: 688 ALSMKNIKQ 696


>gi|219670395|ref|YP_002460830.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
 gi|219540655|gb|ACL22394.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
          Length = 247

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR++  +R +    G      GS L   G T+ I   T+    +E+      GT   
Sbjct: 3   RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATV----EEKVPLFKKGTGSG 58

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT       S  G  + R +   RL  RA+  V+        T+ +  +
Sbjct: 59  WVTAEYSMLPRATQTRNPRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA       G+    PI   +A +++G V    D + L 
Sbjct: 119 VIQADGGTRTASITGAYVALVDAVNHLLAKGLIKENPILDSLAAVSVGKV----DGMALL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED    +D  V  T  G
Sbjct: 175 DLAYEEDSKAEVDMNVVMTGQG 196


>gi|294507814|ref|YP_003571872.1| 30S ribosomal protein S1 [Salinibacter ruber M8]
 gi|294344142|emb|CBH24920.1| 30S ribosomal protein S1 [Salinibacter ruber M8]
          Length = 876

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G V  ++DFG F+   G  DGL+HI+ LS  RV+  S+VV+    + V +LD+
Sbjct: 362 EVGQVLEGTVKNIVDFGVFIDLGGV-DGLLHITDLSWGRVSHPSEVVELDQELEVVVLDY 420

Query: 678 -DDRGKIKLSMK 688
            ++R +I L +K
Sbjct: 421 EEERQRISLGLK 432



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           + + +G+VV + ++GAFV      +GLVHIS++S T  +   S +V  G  V VK+L+ D
Sbjct: 449 DDVVEGKVVSITNYGAFVEIEKGIEGLVHISEMSWTRHIEHPSQMVSLGQVVDVKILNID 508

Query: 679 -DRGKIKLSMK 688
            +  KI L MK
Sbjct: 509 QEERKISLGMK 519



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           I+D      +  G V  + +FG FV      DGLVH+S LS T+++    D+V E   + 
Sbjct: 529 ISDRYPAGTVLTGTVRNITNFGVFVEIEPGIDGLVHVSDLSWTKKIRHPGDMVDEEQELD 588

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           V +L+ D +R +I L  K V  N
Sbjct: 589 VVILNIDEERRRISLGHKQVKTN 611


>gi|270160087|ref|ZP_06188743.1| ribosomal protein S1 [Legionella longbeachae D-4968]
 gi|289165134|ref|YP_003455272.1| 30S ribosomal protein S1 [Legionella longbeachae NSW150]
 gi|269988426|gb|EEZ94681.1| ribosomal protein S1 [Legionella longbeachae D-4968]
 gi|288858307|emb|CBJ12175.1| 30S ribosomal protein S1 [Legionella longbeachae NSW150]
          Length = 559

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ S+ D  E++ I K     + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G 
Sbjct: 185 LLESLHDGQELHGIVK----NLTDYGAFIDLGGI-DGLLHITDISWKRVKHPSEVLSVGQ 239

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            + VK+L FD +R ++ L MK
Sbjct: 240 DIKVKVLSFDSERNRVSLGMK 260



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           + K  +G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L+ 
Sbjct: 276 IGKKLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVALGDVVDVMVLEI 335

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +R +I L MK   Q  G P
Sbjct: 336 DEERRRISLGMK---QCVGNP 353



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  V      V       G + +S+LS ERV   + VVKEGD +  K+++ D + 
Sbjct: 453 IVKGTVTAVDPKTVTVALADDITGTIRVSELSDERVDDATTVVKEGDEIEAKIINVDRKN 512

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 513 RSITLSVKAKD 523


>gi|225166329|ref|ZP_03728014.1| RNA binding S1 domain protein [Opitutaceae bacterium TAV2]
 gi|224799427|gb|EEG17971.1| RNA binding S1 domain protein [Opitutaceae bacterium TAV2]
          Length = 788

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+SQLS   V   S+VVK G  V   +++ D  R +I
Sbjct: 691 GIVTNVTAFGAFVDVGVHQDGLVHVSQLSDTFVKDASEVVKPGQKVRATVIEVDLARNRI 750

Query: 684 KLSMKVVDQ 692
            LS++   Q
Sbjct: 751 ALSLRTNPQ 759


>gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36]
 gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36]
          Length = 237

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R    MG    R +   RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALKLAVNKLMKAGDVVSDPLVDPVAAISCGI 166


>gi|297528930|ref|YP_003670205.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
 gi|297252182|gb|ADI25628.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
          Length = 121

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 9   IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 68

Query: 682 -KIKLSMKVVD 691
            +  LS+K ++
Sbjct: 69  RRASLSLKALE 79


>gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
 gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
          Length = 392

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS++  + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 603 IEAAREMIR--SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E A   ++  S+ D      + +G+V ++ +FGAFV   G  DGLVH+S+LS + V   
Sbjct: 175 VEQAENEVKKASLLDSLNAGDVIEGKVARLTNFGAFVDIGGV-DGLVHVSELSHQHVQSP 233

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +VV  GD V VK+   + D  +I LS+K
Sbjct: 234 EEVVFVGDKVNVKVKSVEKDTERISLSIK 262



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  + K ++VVKEGD + 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIE 68

Query: 671 -WVKLLDFDDR 680
            +V  ++FD+ 
Sbjct: 69  AYVTKIEFDEE 79


>gi|312897937|ref|ZP_07757350.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
 gi|310620971|gb|EFQ04518.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
          Length = 724

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG V  V+DFGAFV F     GL+H S+LST       D++  GD V  +++  
Sbjct: 646 QVGTVVKGTVQNVVDFGAFVDFGLKTAGLIHRSELSTRPFKHPLDILHTGDIVEAQIIGV 705

Query: 678 D-DRGKIKLSMKVVDQ 692
           +  + +I LS+K +++
Sbjct: 706 EAKKNRIALSIKALEK 721


>gi|228995617|ref|ZP_04155283.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock3-17]
 gi|229003244|ref|ZP_04161081.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock1-4]
 gi|228758014|gb|EEM07222.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock1-4]
 gi|228764189|gb|EEM13070.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock3-17]
          Length = 722

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDVDMKKGR 713

Query: 683 IKLSM 687
           + L+M
Sbjct: 714 VALAM 718


>gi|254474658|ref|ZP_05088044.1| S1 RNA binding domain protein [Ruegeria sp. R11]
 gi|214028901|gb|EEB69736.1| S1 RNA binding domain protein [Ruegeria sp. R11]
          Length = 786

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ +  ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK 
Sbjct: 637 KDGVEEITDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKT 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V V + + D  R +I L+MK
Sbjct: 696 GQVVKVTVTEVDVPRKRIGLTMK 718


>gi|11498138|ref|NP_069363.1| translation initiation factor IF-2 subunit alpha [Archaeoglobus
           fulgidus DSM 4304]
 gi|3122240|sp|O29723|IF2A_ARCFU RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|2650097|gb|AAB90710.1| translation initiation factor eIF-2, subunit alpha (eif2A)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 267

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVV 664
           + +I   +  P   +I  G V +V+DFGAFV       R+G+VHIS++++  +    + V
Sbjct: 4   KRLIIKRSGYPSKGEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIREHV 63

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           K+G  V  K+LD +  RG I LS+K V++
Sbjct: 64  KKGQKVICKVLDVNPKRGHIDLSIKDVNE 92


>gi|238022458|ref|ZP_04602884.1| hypothetical protein GCWU000324_02366 [Kingella oralis ATCC 51147]
 gi|237867072|gb|EEP68114.1| hypothetical protein GCWU000324_02366 [Kingella oralis ATCC 51147]
          Length = 557

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 193 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGKEVEAKVLRFDQDK 251

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 252 QRVSLGLK 259



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+ ++++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQGSRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 333 DIDEDKRRISLGMKQCQAN 351



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ 
Sbjct: 367 KGTVKSITDFGVFVGLPGNIDGLVHLSDLSWTESGEEAVRKYKKGEEVETVVLAIDVEKE 426

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 427 RISLGIK---QLEGDPF 440


>gi|228989421|ref|ZP_04149410.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus pseudomycoides DSM 12442]
 gi|228770368|gb|EEM18943.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus pseudomycoides DSM 12442]
          Length = 722

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDVDMKKGR 713

Query: 683 IKLSM 687
           + L+M
Sbjct: 714 VALAM 718


>gi|220934715|ref|YP_002513614.1| ribosomal protein S1 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996025|gb|ACL72627.1| ribosomal protein S1 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 558

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAF+   G  DGL+HI+ ++ +RV   S+VV+ G  + VK+L FD +R
Sbjct: 194 VLKGIVKNLTDYGAFLDLGGI-DGLLHITDMAWKRVKHPSEVVEIGQEIEVKVLKFDRER 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++  T +    + +V  GD V V +LD D +R +
Sbjct: 282 GKVTNITDYGCFVEIEDGVEGLVHVSEMDWTNKNIAPNKMVAVGDEVEVMILDIDEERRR 341

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 342 ISLGIKQCKAN 352


>gi|293572585|ref|ZP_06683559.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
 gi|291607368|gb|EFF36716.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
          Length = 451

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATV----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ I  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALRLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|255019084|ref|ZP_05291210.1| general stress protein 13 [Listeria monocytogenes FSL F2-515]
          Length = 104

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 DDRGKIK 684
           D+R KIK
Sbjct: 65  DERKKIK 71


>gi|237736793|ref|ZP_04567274.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
 gi|229420655|gb|EEO35702.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 23/211 (10%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+  ++   M  KK+R DGRD + +R + A         GS L   G+T+ I   T+   
Sbjct: 4   IKEMIIEADMRTKKLREDGRDVDELRVLKATKDFNLYAEGSVLMECGNTKVICTATV--- 60

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVL 413
             ++    L    +      Y+ +P ATGE     S  G  + R +   RL  RA+   +
Sbjct: 61  -SDKVPPFLKNQGKGWLTAEYSMIPRATGERNQRESAKGKLTGRTMEIQRLIGRALRTAV 119

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGI 462
                   T+ I  ++ ++DG +   ++ G  +AL  A       GV    PI   VA I
Sbjct: 120 DLEKLGERTITIDCDVIQADGGTRTTSITGGYIALALAMKKLVAEGVLAENPIISNVAAI 179

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           ++G+V +G   +   D+   ED    +D  V
Sbjct: 180 SVGIV-NGTPVL---DLKYTEDSAAEVDMNV 206


>gi|299137403|ref|ZP_07030585.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600808|gb|EFI56964.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 566

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           G V ++MDFGAFV      +GL+H+S++S  ++V K SD++K GDTV
Sbjct: 300 GSVTRLMDFGAFVELEPGIEGLIHVSEMSWVQKVRKPSDLLKSGDTV 346



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDF 677
           V    +G V ++M FGAFV      +GLVHIS++S + R+    DV++ G+ V  +++  
Sbjct: 381 VGAAIEGPVTRLMKFGAFVELAEGVEGLVHISEISADKRINHPQDVLRVGEVVKAQVIGL 440

Query: 678 D-DRGKIKLSMK 688
           D ++ +++LSMK
Sbjct: 441 DPEKRQLRLSMK 452



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  GQV  +  +GAFV   G  DGL+HIS +S  RV    DV+  G  + +K+L  +   
Sbjct: 212 IVSGQVRSLASYGAFVDLGGI-DGLLHISDISWSRVGTPEDVLTVGQQLQLKVLKVEPES 270

Query: 682 K-IKLSMKVVD 691
           K I L +K ++
Sbjct: 271 KRISLGLKQLE 281


>gi|194017374|ref|ZP_03055986.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
 gi|194011242|gb|EDW20812.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
          Length = 242

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R I  + G +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASI----EDRVPPFLRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A       GV    PI+  +A I++G+  D    ++L
Sbjct: 117 DVIQADGGTRTASITGAFVAMTLAIQKLRAEGVIKQNPITDYLAAISVGI--DSQQGLLL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  V  T +G
Sbjct: 175 -DLNYEEDSSAEVDMNVIMTGAG 196


>gi|167752365|ref|ZP_02424492.1| hypothetical protein ALIPUT_00609 [Alistipes putredinis DSM 17216]
 gi|167660606|gb|EDS04736.1| hypothetical protein ALIPUT_00609 [Alistipes putredinis DSM 17216]
          Length = 647

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +++I S     E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV   
Sbjct: 245 AELEAQKQVIMSKL---EKGQILEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVNHP 300

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
            ++V   + + V +LDFDD + +I L +K
Sbjct: 301 EEIVSLDEKIRVVILDFDDAKKRIALGLK 329



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 350 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTL-DRNE 408

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 409 RKMSLGI 415


>gi|332970684|gb|EGK09665.1| 30S ribosomal protein S1 [Kingella kingae ATCC 23330]
          Length = 557

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 193 IVKGIVKNLTDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEMGQEVEAKVLKFDQDK 251

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 252 QRVSLGLK 259



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + ++GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQSTRLF-GKVSNLTEYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D D+ +I L MK    N  K
Sbjct: 333 DIDEDKRRISLGMKQCQSNPWK 354



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG F+   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ 
Sbjct: 367 KGAVKSITDFGVFIGLPGNIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKE 426

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 427 RISLGIK---QLEGDPF 440


>gi|146318425|ref|YP_001198137.1| hypothetical protein SSU05_0770 [Streptococcus suis 05ZYH33]
 gi|145689231|gb|ABP89737.1| Unknown protein [Streptococcus suis 05ZYH33]
          Length = 120

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V ++  FGAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D+  G++
Sbjct: 3   GKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRV 61

Query: 684 KLSMK 688
            LS+K
Sbjct: 62  SLSLK 66


>gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 248

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R++    G L    GS L   G T+ +   +L     E     + G  R
Sbjct: 1   MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASL----TEGVPRWMKGEGR 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R     RL  R++  VL  +     TL++  
Sbjct: 57  GWATAEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--------GVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL+DA         +P     +   VA I++G+V DG   +
Sbjct: 117 DVLQADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIV-DGTPVL 175

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+  +ED     D  V  T SG
Sbjct: 176 ---DLPYEEDSTAETDMNVVMTGSG 197


>gi|134302709|ref|YP_001122677.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050486|gb|ABO47557.1| Ribosomal protein S1 [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 556

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEINVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 455 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 515 SITLSIKAVDEDN 527


>gi|328676457|gb|AEB27327.1| Ribonuclease PH [Francisella cf. novicida Fx1]
          Length = 235

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     +   DS  G   
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA               P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   +  GI  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|317503026|ref|ZP_07961108.1| YhgF like protein [Prevotella salivae DSM 15606]
 gi|315665863|gb|EFV05448.1| YhgF like protein [Prevotella salivae DSM 15606]
          Length = 707

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAF+     +DGLVHISQL+ + +   +++VK  + V+V++++ D  R +I
Sbjct: 639 GIVTNITNFGAFIDIGVHQDGLVHISQLADKFIKDPNEIVKLHEHVFVRVIEIDHKRQRI 698

Query: 684 KLSMK 688
            LSM+
Sbjct: 699 ALSMR 703


>gi|229815851|ref|ZP_04446175.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
 gi|229808546|gb|EEP44324.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
          Length = 244

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 21/200 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR +  +R ++    +++   GS L   GDT+ +   T+    +E        + + 
Sbjct: 8   RANGRAANQMRTVNLTRDVMKHALGSCLVEFGDTKVLCAATI----EEGVPGWRKASHQG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T   +R    +R  R +   RL  R++  V+   +   +T+ +  ++ 
Sbjct: 64  WVTAEYAMLPASTNRRTRRETNNRKGRSMEIERLIGRSLRTVVNMKSLGEHTVTVDCDVI 123

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL D           A +P++  VA ++MGLV DG + +   D+
Sbjct: 124 QADGGTRTASITGAWVALHDALMAWVEAGKIARLPLTGQVAAVSMGLV-DGCELL---DL 179

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
              ED    +D  +  TD+G
Sbjct: 180 DYSEDSHAEVDMNLVATDAG 199


>gi|254465355|ref|ZP_05078766.1| S1 RNA binding domain protein [Rhodobacterales bacterium Y4I]
 gi|206686263|gb|EDZ46745.1| S1 RNA binding domain protein [Rhodobacterales bacterium Y4I]
          Length = 788

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ +  ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK 
Sbjct: 637 KDGVEEITDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKT 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V V + + D  R +I L+MK
Sbjct: 696 GQVVKVTVTEVDVPRKRIGLTMK 718


>gi|303231882|ref|ZP_07318593.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513489|gb|EFL55520.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 725

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ +V  + KG V  V+DFGAF+ F    +GL+H S+L T +    SDV+  
Sbjct: 635 RKHVVSLEDI-KVGTVVKGTVHNVVDFGAFIDFGLKTNGLLHRSELCTAK-QHPSDVLAV 692

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD +  +++  D  R +I LS+K
Sbjct: 693 GDIIEAEIISVDVKRNRIGLSVK 715


>gi|227551340|ref|ZP_03981389.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257887545|ref|ZP_05667198.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257896040|ref|ZP_05675693.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257898668|ref|ZP_05678321.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|293378788|ref|ZP_06624945.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
 gi|227179551|gb|EEI60523.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257823599|gb|EEV50531.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257832605|gb|EEV59026.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257836580|gb|EEV61654.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|292642581|gb|EFF60734.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
          Length = 451

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATV----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ I  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALRLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|30141902|emb|CAD30282.1| 30S ribosomal protein S1 [Thermus thermophilus HB27]
          Length = 536

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV +  FGAFV      +GL+HIS+LS T+R    S+VVKEGD V   +L  D +  
Sbjct: 298 RGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGDEVEAVVLRLDPEER 357

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 358 RLSLGLK 364



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + KG+V  V DFG FV      +GLVH+S+L  +RV   + + K+GD + V +L+ D   
Sbjct: 383 VLKGKVTGVTDFGVFVEIEPGIEGLVHVSELDHKRVENPAALFKKGDEMEVVVLNIDPVE 442

Query: 681 GKIKLSMK 688
            ++ LS K
Sbjct: 443 QRVSLSRK 450



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           DFG FV+  G  DGLVH S+++  R     +V+++G  V  ++L  D ++ ++ LS+K +
Sbjct: 221 DFGVFVNL-GPVDGLVHRSEITWGRFNHPREVIQKGQKVKARVLSVDPEKERVNLSIKAL 279


>gi|46200126|ref|YP_005793.1| 30S ribosomal protein S1 [Thermus thermophilus HB27]
 gi|46197754|gb|AAS82166.1| SSU ribosomal protein S1P [Thermus thermophilus HB27]
          Length = 536

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV +  FGAFV      +GL+HIS+LS T+R    S+VVKEGD V   +L  D +  
Sbjct: 298 RGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGDEVEAVVLRLDPEER 357

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 358 RLSLGLK 364



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + KG+V  V DFG FV      +GLVH+S+L  +RV   + + K+GD + V +L+ D   
Sbjct: 383 VLKGKVTGVTDFGVFVEIEPGIEGLVHVSELDHKRVENPAALFKKGDEMEVVVLNIDPVE 442

Query: 681 GKIKLSMK 688
            ++ LS K
Sbjct: 443 QRVSLSRK 450



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           DFG FV+  G  DGLVH S+++  R     +V+++G  V  ++L  D ++ ++ LS+K +
Sbjct: 221 DFGVFVNL-GPVDGLVHRSEITWGRFNHPREVIQKGQKVKAQVLSVDPEKERVNLSIKAL 279


>gi|154359308|gb|ABS79676.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359310|gb|ABS79677.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359312|gb|ABS79678.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359314|gb|ABS79679.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359316|gb|ABS79680.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359318|gb|ABS79681.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359320|gb|ABS79682.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359322|gb|ABS79683.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359324|gb|ABS79684.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359326|gb|ABS79685.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359328|gb|ABS79686.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359330|gb|ABS79687.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359332|gb|ABS79688.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359334|gb|ABS79689.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359336|gb|ABS79690.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359338|gb|ABS79691.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359340|gb|ABS79692.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359342|gb|ABS79693.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359344|gb|ABS79694.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359346|gb|ABS79695.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359348|gb|ABS79696.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359350|gb|ABS79697.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359352|gb|ABS79698.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359358|gb|ABS79701.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359362|gb|ABS79703.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359364|gb|ABS79704.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359366|gb|ABS79705.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359368|gb|ABS79706.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359370|gb|ABS79707.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359372|gb|ABS79708.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 171

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 102 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 160

Query: 679 -DRGKIKLSMK 688
            DRG++ LS K
Sbjct: 161 RDRGRVSLSTK 171


>gi|331004384|ref|ZP_08327857.1| hypothetical protein HMPREF0491_02719 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411114|gb|EGG90533.1| hypothetical protein HMPREF0491_02719 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 717

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHIS+LS + +    + V  GD V V++   D  +
Sbjct: 648 ILKGTVRNVIDFGAFVDIGVHQDGLVHISKLSKKFIKHPLEAVSVGDIVEVRVDSVDLKK 707

Query: 681 GKIKLSM 687
            +I LSM
Sbjct: 708 KRIALSM 714


>gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
 gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
          Length = 248

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 20/200 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R ++ +R +  + G  +   GS+L   G T+ +   T+    +E+    L GT   
Sbjct: 3   RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATV----EERVPFFLKGTGTG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP A  E +   A    + G      RL  RA+  V+   A    T+ I  +
Sbjct: 59  WVTAEYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV---------PISKPVAGIAMGLVKDGDDFIILSDI 479
           + ++DG +  A+V G+ +AL++A           P+   VA +++G+  + +  +   D+
Sbjct: 119 VLQADGGTRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEPLL---DL 175

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
             +ED    +D  +  T +G
Sbjct: 176 CYEEDSAAMVDMNIVMTGAG 195


>gi|218778787|ref|YP_002430105.1| ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01]
 gi|218760171|gb|ACL02637.1| ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01]
          Length = 616

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 11/97 (11%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERV 657
           +E  RE  RS T    +  I++G+VV+     + ++G FV   G  DGL+HI+ +S  RV
Sbjct: 223 LEKEREEQRSST----LQNIHEGKVVEGVVKNITEYGVFVDLGGI-DGLLHITDISWGRV 277

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              S++   G T+ VK+LD D +R ++ L MK + ++
Sbjct: 278 KHPSELFGVGQTITVKVLDLDLERERVSLGMKQLKED 314



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +G++  + DFG F+      DGLVHIS +S T+R+    DV K+GD V   +L  D
Sbjct: 417 EGRIKNITDFGMFIGIDEGIDGLVHISDISWTKRINHPGDVYKKGDEVRAIVLHID 472



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G+VV + D+GAFV      +GL+H+S++S T ++   S VV  GD +   +LD      +
Sbjct: 331 GKVVSLTDYGAFVELEEGIEGLIHVSEMSWTRKIRHPSKVVSVGDDLEAVVLDIKPSNRR 390

Query: 683 IKLSMKVVDQN 693
           + L MK V  N
Sbjct: 391 VSLGMKQVAPN 401



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I++  +V     G +  V DFG FV      +GLVH+S+++ E+V         GDTV 
Sbjct: 492 TISERYQVGTKVNGLITSVTDFGIFVELEEGIEGLVHVSEVAKEKVKTPVGQFNVGDTVE 551

Query: 672 VKLLDFDDRG-KIKLSMKVVDQN 693
             +++ + +  +I LS+K ++++
Sbjct: 552 TVVVNINPKERRIGLSIKRLEED 574


>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
 gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
          Length = 246

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 98/207 (47%), Gaps = 14/207 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V    +   ++ +S
Sbjct: 7   LLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSKHTES 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           +   Q       Y+    +T E        R+ +      ++A+   + ++  +P + + 
Sbjct: 67  IINCQ-------YSQATFSTAERKYRPRGDRKSLEFKMYLQQALSAAI-KSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISHFEE 175

Query: 485 HLGHMDFKVAG--TDSGITAMQMDMKI 509
             G     VA   T   I  ++M  + 
Sbjct: 176 VSGGPKLTVAALPTAEKIAFLEMSERF 202


>gi|55980131|ref|YP_143428.1| 30S ribosomal protein S1 [Thermus thermophilus HB8]
 gi|55771544|dbj|BAD69985.1| 30S ribosomal protein S1 [Thermus thermophilus HB8]
          Length = 536

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV +  FGAFV      +GL+HIS+LS T+R    S+VVKEGD V   +L  D +  
Sbjct: 298 RGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGDEVEAVVLRLDPEER 357

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 358 RLSLGLK 364



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + KG+V  V DFG FV      +GLVH+S+L  +RV   + + K+GD + V +L+ D   
Sbjct: 383 VLKGKVTGVTDFGVFVEIEPGIEGLVHVSELDHKRVENPAALFKKGDEMEVVVLNIDPVE 442

Query: 681 GKIKLSMK 688
            ++ LS K
Sbjct: 443 QRVSLSRK 450



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           DFG FV+  G  DGLVH S+++  R     +V+++G  V  ++L  D ++ ++ LS+K +
Sbjct: 221 DFGVFVNL-GPVDGLVHRSEITWGRFNHPREVIQKGQKVKAQVLSVDPEKERVNLSIKAL 279


>gi|292670676|ref|ZP_06604102.1| YhgF like protein [Selenomonas noxia ATCC 43541]
 gi|292647703|gb|EFF65675.1| YhgF like protein [Selenomonas noxia ATCC 43541]
          Length = 729

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  ++D+  +  I  G V  + DFGAF+     + GL+HIS++S  RV    D++  
Sbjct: 639 RQNIVKLSDLA-IGTILPGTVRNITDFGAFIDIGLKQAGLLHISEMSCRRVRHPLDILSV 697

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD + V ++  D +R +I LS+K + +
Sbjct: 698 GDALDVMIISVDEERERIGLSLKRIKK 724


>gi|288554856|ref|YP_003426791.1| Tex transcription access, protein (S1 RNA binding) [Bacillus
           pseudofirmus OF4]
 gi|288546016|gb|ADC49899.1| Tex transcription access, protein (S1 RNA binding) [Bacillus
           pseudofirmus OF4]
          Length = 726

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L+   V    +VV  G+  TVWV+ +D   +G
Sbjct: 654 QGTVRNVVDFGAFVDVGVKQDGLVHISKLTKRFVKHPLEVVAVGEIVTVWVEDVDI-KKG 712

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 713 RVALTM 718


>gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1]
 gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1]
          Length = 243

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +R++       +   GS L   GDT+ I   ++  R  E   D  
Sbjct: 1   MTNSSPRPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V+      P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +A+ DA             PIS  VA I++G+ +   
Sbjct: 117 IHIDCDVIQADGGTRTASITGAFVAVQDAVAKLVADGKLPRSPISDSVAAISVGVYQG-- 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-------------ITAMQM----DMKIGGISE 514
               L D+   ED     D  V  T +G              T  +M    D+   GI E
Sbjct: 175 --TPLLDLDYAEDSRCDTDMNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGE 232

Query: 515 NIMVMALQQAKR 526
              ++ALQ+A R
Sbjct: 233 ---LIALQKAAR 241


>gi|226360123|ref|YP_002777901.1| 30S ribosomal protein S1 [Rhodococcus opacus B4]
 gi|226238608|dbj|BAH48956.1| 30S ribosomal protein S1 [Rhodococcus opacus B4]
          Length = 494

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   D  
Sbjct: 285 RQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVNDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 LVKVIDIDLERRRISLSLKQANED 368



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 210 QVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|15839029|ref|NP_299717.1| 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
 gi|9107629|gb|AAF85237.1|AE004052_12 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
          Length = 569

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E + E    + D  +   +  G V  + D+GAFV   G  DGL+HI+ 
Sbjct: 177 NVVVSRRAVVESEHSEER-EQLLDKLQEGAVLTGTVKNMTDYGAFVDLGGV-DGLLHITD 234

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +RV    +VV  GD V V++L FD +R ++ L +K
Sbjct: 235 MAWKRVRHPCEVVNIGDEVEVRVLKFDRERNRVSLGLK 272



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +LD D +R +
Sbjct: 294 GKVSNVTDYGAFVEIEAGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMILDVDEERRR 353

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 354 ISLGMKQVAAN 364



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           GQV  + DFG F+   G  DGL+H+S +S     +  D+V   K+GDT+   +L  D +R
Sbjct: 381 GQVKSITDFGIFIGLDGGIDGLLHLSDISWNTTGE--DIVRNFKKGDTLETVVLAVDPER 438

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++Q+
Sbjct: 439 ERISLGVKQLEQD 451


>gi|28199337|ref|NP_779651.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
 gi|71276211|ref|ZP_00652490.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
 gi|71898750|ref|ZP_00680919.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|71900470|ref|ZP_00682601.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|170730703|ref|YP_001776136.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
 gi|182682062|ref|YP_001830222.1| 30S ribosomal protein S1 [Xylella fastidiosa M23]
 gi|28057443|gb|AAO29300.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
 gi|71162972|gb|EAO12695.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
 gi|71729776|gb|EAO31876.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|71731515|gb|EAO33577.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|167965496|gb|ACA12506.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
 gi|182632172|gb|ACB92948.1| ribosomal protein S1 [Xylella fastidiosa M23]
 gi|307578330|gb|ADN62299.1| 30S ribosomal protein S1 [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 558

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV    +VV  GD V V++L FD +R
Sbjct: 195 VLTGTVKNMTDYGAFVDLGGV-DGLLHITDMAWKRVRHPCEVVNIGDEVEVRVLKFDRER 253

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 254 NRVSLGLK 261



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +LD D +R +
Sbjct: 283 GKVSNVTDYGAFVEIEAGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMILDVDEERRR 342

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 343 ISLGMKQVAAN 353



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           GQV  + DFG F+   G  DGL+H+S +S     +  D+V   K+GDT+   +L  D +R
Sbjct: 370 GQVKSITDFGIFIGLDGGIDGLLHLSDISWNTTGE--DIVRNFKKGDTLETVVLAVDPER 427

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++Q+
Sbjct: 428 ERISLGVKQLEQD 440


>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
 gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
          Length = 238

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|255019644|ref|ZP_05291723.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
 gi|254970867|gb|EET28350.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
          Length = 241

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 36/237 (15%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GRD++T+R +       +   GS L   GDT+ +   ++    +++    L G  R 
Sbjct: 3   RPSGRDAQTLRPVEIIRPFTKYAEGSVLIACGDTRVLCTASI----EDKVPPFLKGQGRG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPYT 422
                Y  LP +T E  RM     RE   G          RL  R++   +   A    T
Sbjct: 59  WVTAEYGMLPRSTQE--RMP----REAAKGKIGGRTHEIQRLIGRSLRAAVDLEALGERT 112

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-------GVPISKP----VAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +AL DA       GV    P    VA +++G+ +  D
Sbjct: 113 VWIDCDVLQADGGTRTASITGACIALADALQGLLQRGVLTHNPWRHWVAAVSVGIRE--D 170

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
           + I+  D+   ED    +D  V  TD G    +Q   +    S   M   L  A+RG
Sbjct: 171 EAIL--DLDYAEDSTAEVDMNVVMTDDGRFVEVQGTAEGAAFSAARMADMLLLARRG 225


>gi|89895968|ref|YP_519455.1| hypothetical protein DSY3222 [Desulfitobacterium hafniense Y51]
 gi|89335416|dbj|BAE85011.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 247

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR++  +R +    G      GS L   G T+ I   T+    +E+      GT   
Sbjct: 3   RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATV----EEKVPLFKKGTGSG 58

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT       S  G  + R +   RL  RA+  V+        T+ +  +
Sbjct: 59  WVTAEYSMLPRATQTRNHRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA       G+    PI   +A +++G V    D + L 
Sbjct: 119 VIQADGGTRTASITGAYVALVDAVNHLLAKGLIKENPILDSLAAVSVGKV----DGMALL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED    +D  V  T  G
Sbjct: 175 DLAYEEDSKAEVDMNVVMTGQG 196


>gi|254673142|emb|CBA07943.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha275]
 gi|316984099|gb|EFV63077.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
 gi|325132498|gb|EGC55191.1| ribosomal protein S1 [Neisseria meningitidis M6190]
 gi|325140474|gb|EGC62995.1| ribosomal protein S1 [Neisseria meningitidis CU385]
          Length = 589

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 223 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 281

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 282 QRVSLGMK 289



 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 304 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 362

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 363 EIDEGRRRISLGMKQCQAN 381



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 398 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 457

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 458 ISLGIK---QLEGDPF 470


>gi|254481764|ref|ZP_05095007.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
 gi|214037893|gb|EEB78557.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
          Length = 558

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVEVGQEIDVKILKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +++   ++  + D+G F       +GLVH+S++  T +    S +V  GD + V +L
Sbjct: 275 PEGSRV-NAKITNLTDYGCFAELEEGVEGLVHVSEMDWTNKNVHPSKIVNLGDELEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   QN
Sbjct: 334 DIDEERRRISLGIKQCQQN 352


>gi|46581552|ref|YP_012360.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601286|ref|YP_965686.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|46450974|gb|AAS97620.1| ribosomal protein S1 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561515|gb|ABM27259.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311235196|gb|ADP88050.1| ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  ++D+GAFV      +GLVHIS++S T ++   S +V+ GD V V +L  D D+ 
Sbjct: 297 QGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKK 356

Query: 682 KIKLSMKVVDQN 693
           +I L MK V  N
Sbjct: 357 RISLGMKQVKPN 368



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG+   + ++G FV   G  DGL+HI+ +S +R+    ++V  G  + +K+L F
Sbjct: 206 EEGQVVKGKAKNITEYGVFVDLGGL-DGLLHITDMSWKRIRHPKELVSLGQELELKVLSF 264

Query: 678 D-DRGKIKLSMK 688
           D D  K+ L MK
Sbjct: 265 DRDSQKVSLGMK 276



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           V  +  G V  + DFG FV      +GLVH+S++S +++   S++ KEG  +  K++
Sbjct: 466 VGTLVTGSVTNITDFGLFVEVEEGIEGLVHVSEISQKKIKSPSEIYKEGQEIQAKVI 522



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +G +  + +FG F+      DGL+H+S +S T+++   +++ K GD V  K+L  D
Sbjct: 382 ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAKVLTVD 439


>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
          Length = 227

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R++S +  +L R  GSS F + DT A+  V  G  E +   + L     +
Sbjct: 4   RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAV-YGPAEVKSSKELL-----D 57

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +   F P       + G     +     + R+A+ PV+ +TA    ++ ++ ++   
Sbjct: 58  KATVQTVFRP-------KTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHD 110

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           DG+     +  +S+AL+DAGVP+S  +A +    +   D
Sbjct: 111 DGALLACALNSASMALIDAGVPMSAVLAAVTCAWLPAAD 149


>gi|118475172|ref|YP_892406.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40]
 gi|118414398|gb|ABK82818.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40]
          Length = 557

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  + +FGAFV   GA +GL+H    S +R  K  D++K GD + VK++  DD+ 
Sbjct: 378 IVKGVVTTLTNFGAFVR-VGALEGLLHNEDSSWDRNDKCKDILKTGDEIDVKIIKIDDKN 436

Query: 682 -KIKLSMK 688
            KI LS K
Sbjct: 437 QKISLSQK 444



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  R+   +I ++ +   I +G + K+  +G FV   G  DGLVH S++S +     + +
Sbjct: 188 EDRRKRKEAIANIIDNTDIIEGTIKKITTYGMFVD-VGGIDGLVHYSEISYKGPVNPNTL 246

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
            KEGD V VK++ +D D+  + LS+K
Sbjct: 247 YKEGDKVDVKIIKYDNDKKHLSLSIK 272


>gi|304387393|ref|ZP_07369585.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
 gi|304338644|gb|EFM04762.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
          Length = 589

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 223 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 281

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 282 QRVSLGMK 289



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 304 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 362

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 363 EIDEGRRRISLGMKQCQAN 381



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 398 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 457

Query: 683 IKLSMK 688
           I L +K
Sbjct: 458 ISLGIK 463


>gi|322435886|ref|YP_004218098.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163613|gb|ADW69318.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 588

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--- 678
           +  G V  + ++GAFV   GA D L+HIS ++  RVA  +DV+  GD+V  K+L  D   
Sbjct: 217 VVNGTVRSLTEYGAFVDLAGA-DALLHISDMAWHRVANPADVLSVGDSVEAKILKIDATD 275

Query: 679 -DRGKIKLSMK 688
             R +I + MK
Sbjct: 276 PARRRISIGMK 286



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 5/75 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V +  DFGAFV      +GL+HIS+++  ++V K SDVVK GD+V   +L  D ++ +
Sbjct: 308 GTVTRDADFGAFVEIAPGIEGLIHISEMAWGKKVRKPSDVVKVGDSVEAVILGIDTEQKR 367

Query: 683 IKLSMKVVDQNTGKP 697
           + L +K   Q  G P
Sbjct: 368 MSLGLK---QALGDP 379



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
           E+++++        + +G V  +  FGAFV      +G++HIS+++ E R+   SDV++ 
Sbjct: 382 ELVKTV----HAGSVVEGPVSSITKFGAFVTIAEGVEGMIHISEITAEKRLNHPSDVLRV 437

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G+ V  ++L+ D ++ ++KLS+K
Sbjct: 438 GEVVQAQVLEIDREKRQLKLSIK 460


>gi|194098874|ref|YP_002001938.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
 gi|193934164|gb|ACF29988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
          Length = 584

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 218 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 276

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 277 QRVSLGMK 284



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 299 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 357

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 358 EIDEGRRRISLGMKQCQAN 376



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 393 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 452

Query: 683 IKLSMK 688
           I L +K
Sbjct: 453 ISLGIK 458


>gi|89094100|ref|ZP_01167043.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
 gi|89081575|gb|EAR60804.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
          Length = 563

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 5/97 (5%)

Query: 595 IASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +EAA   E  + + ++ E  K+ KG V  + D+GAF+   G  DGL+HI+ +
Sbjct: 166 IVVSRRAVLEAAYSEEREKLLANLKEGLKV-KGIVKNITDYGAFIDLGGV-DGLLHITDI 223

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + +RV   S+ +K G+ + V++L FD +R ++ L MK
Sbjct: 224 AWKRVKHPSEALKVGEEIDVQVLRFDKERNRVSLGMK 260



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           K +V  + D+G F       +GL+H+S++  T +    S VV+ GD V V LLD D +R 
Sbjct: 281 KAKVTNLTDYGCFAEIENGIEGLIHVSEMDWTNKNVHPSKVVQVGDMVDVMLLDIDMERR 340

Query: 682 KIKLSMK 688
           +I L MK
Sbjct: 341 RISLGMK 347



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           G +  + DFG F+   G  DGLVH+S LS E+  +  +VV   K+GD V   +L  D +R
Sbjct: 369 GSIRSITDFGVFIGLDGGIDGLVHLSDLSWEQPGE--EVVKSYKKGDEVEAVVLSVDAER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K +D +
Sbjct: 427 ERIALGIKQLDSD 439


>gi|224532124|ref|ZP_03672756.1| ribosomal protein S1 [Borrelia valaisiana VS116]
 gi|224511589|gb|EEF81995.1| ribosomal protein S1 [Borrelia valaisiana VS116]
          Length = 551

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  +I L +K +++N
Sbjct: 330 IDKENQRISLGIKQINEN 347



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  RE+++ I  V   N+  +  G V ++ ++GA V       G++H   ++  +V   
Sbjct: 167 LERERELVKRIELVSSYNEEDVVDGVVDRITEYGAIVKIKNFVTGILHKRNIAFNQVENI 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D V+ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFVRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|126641617|ref|YP_001084601.1| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
 gi|184157939|ref|YP_001846278.1| 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
 gi|183209533|gb|ACC56931.1| putative 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
          Length = 479

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 119 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 177

Query: 684 KLSMK 688
            L +K
Sbjct: 178 SLGLK 182



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 201 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 260

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 261 RRRISLGIKQTRAN 274



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 291 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 350

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 351 ISLGIKQLNSD 361


>gi|111017993|ref|YP_700965.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1]
 gi|110817523|gb|ABG92807.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1]
          Length = 494

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   D   VK++D D
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVNDDALVKVIDID 352

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K  +++
Sbjct: 353 LERRRISLSLKQANED 368



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D D
Sbjct: 210 QVRKGIVSSIVNFGAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLD 268

Query: 680 RGKIKLSMKVVDQN 693
           R ++ LS+K   ++
Sbjct: 269 RERVSLSLKATQED 282


>gi|217420445|ref|ZP_03451950.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238561030|ref|ZP_00442682.2| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|251766543|ref|ZP_02264154.2| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
 gi|254196137|ref|ZP_04902562.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|254207704|ref|ZP_04914054.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|121229702|gb|ABM52220.1| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|147751598|gb|EDK58665.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|169652881|gb|EDS85574.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|217395857|gb|EEC35874.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238525408|gb|EEP88836.1| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|243065369|gb|EES47555.1| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
          Length = 295

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++  R  E   +  
Sbjct: 53  MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERG 112

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 113 QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 168

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+   G 
Sbjct: 169 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF--GG 226

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
             ++  D+  DED     D  V  T +G
Sbjct: 227 TPVL--DLDYDEDSACDTDMNVVMTGAG 252


>gi|297569509|ref|YP_003690853.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2]
 gi|296925424|gb|ADH86234.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2]
          Length = 568

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + D+G FV   G  DGL HI+ LS  RV+  S + K GD + VK+L +
Sbjct: 197 EEGQVLTGSVTNITDYGVFVDL-GGMDGLCHITDLSWGRVSHPSKMYKVGDEIQVKILKY 255

Query: 678 D-DRGKIKLSMK 688
           D +  K+ L +K
Sbjct: 256 DKENDKVSLGVK 267



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVVKEGDTVWVKLLDFDDRGK- 682
           G+VV + D+GAFV      +GLVHIS++S  + ++  S +V  GD V V +L+ D   K 
Sbjct: 289 GKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVSVGDEVEVAVLNVDPEAKR 348

Query: 683 IKLSMKVVDQN 693
           I L MK +  N
Sbjct: 349 ISLGMKQLQPN 359



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--DRGK 682
           G++  V DFG FV      +GLVH+S+LS E+V     +   GD +  ++++    DR K
Sbjct: 463 GKITNVTDFGVFVELEEGIEGLVHVSELSKEKVETPVGLYNVGDNLEARVINVSAKDR-K 521

Query: 683 IKLSMKVV 690
           I LS+K +
Sbjct: 522 IGLSIKAL 529



 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I +G++  + DFG F+      DGL+H+S LS TER+    +   +G+T+   +L  
Sbjct: 370 VGSIIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKGETIQAVVLKI 429

Query: 678 D 678
           D
Sbjct: 430 D 430


>gi|315924789|ref|ZP_07921006.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621688|gb|EFV01652.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 728

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           ++  V+DFGAF       +GL+HIS++S  RV   +  +  GDTV VK++  + ++ KI 
Sbjct: 585 KITNVLDFGAFAEIIPGVEGLIHISEISYRRVESVASELTPGDTVKVKIIGINREKEKIS 644

Query: 685 LSMKVVDQNTGKP 697
           LS+K   +   +P
Sbjct: 645 LSIKATLEAPERP 657


>gi|260550112|ref|ZP_05824326.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
 gi|260406867|gb|EEX00346.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
          Length = 557

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|149183233|ref|ZP_01861678.1| hypothetical protein BSG1_17276 [Bacillus sp. SG-1]
 gi|148849066|gb|EDL63271.1| hypothetical protein BSG1_17276 [Bacillus sp. SG-1]
          Length = 140

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPEGATGLVHISEVADNYVKDINEHLKVGDEVTVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EKDGKIGLSIR 74


>gi|116250726|ref|YP_766564.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255374|emb|CAK06449.1| putative RNA-binding domain transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 769

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 639 EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V V++++ D  R +I LSM+  D ++  P
Sbjct: 698 DVVKVRVVEVDAKRKRIGLSMRRDDGSSAPP 728


>gi|154359360|gb|ABS79702.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 176

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 105 IGSVVLGVVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 163

Query: 679 -DRGKIKLSMK 688
            DRG++ LS K
Sbjct: 164 RDRGRVSLSTK 174


>gi|167837502|ref|ZP_02464385.1| ribonuclease PH [Burkholderia thailandensis MSMB43]
          Length = 243

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   GDT+ I   ++  R  E   +  
Sbjct: 1   MTNSSPRPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTQLVAAGKIARSPITDYVAAISVGVFGGAP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
               + D+  DED     D  +  T +G
Sbjct: 177 ----VLDLDYDEDSACDTDMNIVMTGAG 200


>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
 gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
          Length = 247

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 27/210 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R I+ ++G+ +R  GS+ + +G+T+ I+    G RE      S+SG   
Sbjct: 12  LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTK-IIAAVYGPREI-----SVSGKGV 65

Query: 372 NDFMMHYNFLPCATGEVSRMGA---PSRREIGH------GRLARRAIHPVLPQTAQFPYT 422
            D  +    + C     S       P ++  G         L ++A    +  T  +P +
Sbjct: 66  FDRAV----VKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTI-HTHLYPRS 120

Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  ++ +SDG    A +  S+LAL+DAG+ +   +   +   +    D I + D++ 
Sbjct: 121 QINIYLQVLQSDGGLKAAAINASTLALIDAGISMKDFICACSTSCI----DGIAVLDLNN 176

Query: 482 DEDHLGHMD--FKVAGTDSGITAMQMDMKI 509
            E+  G  D    +     G+ ++ MD K+
Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSKV 206


>gi|325107428|ref|YP_004268496.1| 30S ribosomal protein S1P [Planctomyces brasiliensis DSM 5305]
 gi|324967696|gb|ADY58474.1| SSU ribosomal protein S1P [Planctomyces brasiliensis DSM 5305]
          Length = 608

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +I D   V     G+V  VM +GAFV      +GLVHIS++S T R+   S++V  GD+V
Sbjct: 294 NIGDKYPVGSRVTGEVTNVMSYGAFVRLEDGIEGLVHISEMSWTRRINHPSELVNIGDSV 353

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            V +L+ + D+ +I L MK    N
Sbjct: 354 DVVVLNINTDKQEISLGMKQTQPN 377



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + KG+V  + ++GAF+      DGL+H+S +S T +++  S+++K+GD V  +++  
Sbjct: 388 VGAVVKGKVRNLTNYGAFIELEEGVDGLLHVSDMSWTRKISHASEMLKKGDEVECQIVSV 447

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +R +I L +K   Q  G P
Sbjct: 448 DEERRRIALGLK---QLQGDP 465



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL--LDFDD 679
           I  G V K+ +FG FV      +GL+H+S+L+  +V    D V  G+++ V++  LD DD
Sbjct: 479 IVTGNVTKITNFGVFVELEPELEGLLHVSELAAHKVNNPEDEVNVGESIEVRILRLDLDD 538

Query: 680 RGKIKLSMKV 689
           R KI LS ++
Sbjct: 539 R-KIGLSRRL 547


>gi|294791775|ref|ZP_06756923.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
 gi|294457005|gb|EFG25367.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
          Length = 632

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  + KG+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALSKSPWDVAEETLHVGDVIKGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|253580013|ref|ZP_04857280.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848532|gb|EES76495.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 719

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV     +DGLVHIS+++   +    + V  GD V V+++  D  +
Sbjct: 648 VLKGTVRNVIDFGAFVDIGVHQDGLVHISEMTERFIKHPLEAVSVGDIVDVRVIGVDMKK 707

Query: 681 GKIKLSMK 688
            +I LSMK
Sbjct: 708 KRISLSMK 715


>gi|227542822|ref|ZP_03972871.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181448|gb|EEI62420.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 237

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 18/203 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R DGR ++ +R++           GS L   G T+ +   ++         DS 
Sbjct: 1   MSETFTRADGRATDELREVRITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT E     S  G    R     RL  R++   +  T    YT
Sbjct: 61  EGW----LTAEYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISK------PVAGIAMGLVKDGDDFIIL 476
           + +  ++ ++DG +  A++ G+ +AL DA   I K      PVA I++GL+ DG   +  
Sbjct: 117 IALDCDVLQADGGTRTASITGAYVALADALASIDKTDALLPPVAAISVGLI-DGHPCL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +   ++G
Sbjct: 174 -DLPYEEDSRAEVDMNIIMKENG 195


>gi|225571633|ref|ZP_03780629.1| hypothetical protein CLOHYLEM_07731 [Clostridium hylemonae DSM
           15053]
 gi|225159710|gb|EEG72329.1| hypothetical protein CLOHYLEM_07731 [Clostridium hylemonae DSM
           15053]
          Length = 718

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 608 EMIRSI--TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           EM R I  TDV E+  + +G V+K     V+DFG FV     +DGLVHIS+++ ++  K 
Sbjct: 626 EMPRPILRTDVLEMKDLTEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISEITDKKFIKH 685

Query: 661 S-DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             + V  GD V VK++  D  + +I+L+MK
Sbjct: 686 PLEAVSVGDIVDVKVMSVDLKKKRIQLTMK 715


>gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619]
 gi|226736926|sp|B1J4L4|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619]
          Length = 240

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL+D            AG P+   +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALVDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQ-GEAVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|111114950|ref|YP_709568.1| 30S ribosomal protein S1 [Borrelia afzelii PKo]
 gi|216264094|ref|ZP_03436088.1| ribosomal protein S1 [Borrelia afzelii ACA-1]
 gi|110890224|gb|ABH01392.1| ribosomal protein S1 [Borrelia afzelii PKo]
 gi|215980138|gb|EEC20960.1| ribosomal protein S1 [Borrelia afzelii ACA-1]
          Length = 551

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  +V K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIKVVKSPQELIKLGQMVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E  RE+ + I  V   N+  +  G V ++ ++GA +       G++H   ++  +V   
Sbjct: 167 LERERELAKRIELVSSYNEEDVVDGMVDRITEYGAIIKIKNFVTGILHKRNIAFNQVENI 226

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            D ++ GD + +K++  + + GK++LS+K +  N
Sbjct: 227 EDFIRVGDKLKLKIIKINPQTGKMELSLKALKAN 260


>gi|193215725|ref|YP_001996924.1| RNA binding S1 domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089202|gb|ACF14477.1| RNA binding S1 domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 758

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V DFGAFV     +DGLVH+S+L+   V+   + VK G  V V++LD +    +
Sbjct: 650 EGVVTNVTDFGAFVDIGVHQDGLVHVSELADNYVSDPLEAVKVGQIVTVRVLDVNLSLRR 709

Query: 683 IKLSMKVVDQNTGK 696
           I LSM+  D+   K
Sbjct: 710 ISLSMRSEDRKKTK 723


>gi|154359306|gb|ABS79675.1| At5g30510-like protein [Arabidopsis halleri subsp. halleri]
          Length = 175

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 105 IGSVVLGVVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 163

Query: 679 -DRGKIKLSMK 688
            DRG++ LS K
Sbjct: 164 RDRGRVSLSTK 174


>gi|169633382|ref|YP_001707118.1| 30S ribosomal protein S1 [Acinetobacter baumannii SDF]
 gi|169796132|ref|YP_001713925.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
 gi|213157134|ref|YP_002319179.1| ribosomal protein S1 [Acinetobacter baumannii AB0057]
 gi|215483586|ref|YP_002325807.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
 gi|239502184|ref|ZP_04661494.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB900]
 gi|260555182|ref|ZP_05827403.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606]
 gi|301345931|ref|ZP_07226672.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB056]
 gi|301510602|ref|ZP_07235839.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB058]
 gi|301597403|ref|ZP_07242411.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB059]
 gi|332851786|ref|ZP_08433711.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
 gi|332865834|ref|ZP_08436618.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
 gi|332872776|ref|ZP_08440742.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
 gi|169149059|emb|CAM86936.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
 gi|169152174|emb|CAP01077.1| 30S ribosomal protein S1 [Acinetobacter baumannii]
 gi|193077207|gb|ABO11999.2| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
 gi|213056294|gb|ACJ41196.1| ribosomal protein S1 [Acinetobacter baumannii AB0057]
 gi|213986936|gb|ACJ57235.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
 gi|260411724|gb|EEX05021.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606]
 gi|322508258|gb|ADX03712.1| rpsA [Acinetobacter baumannii 1656-2]
 gi|323517884|gb|ADX92265.1| 30S ribosomal protein S1 [Acinetobacter baumannii TCDC-AB0715]
 gi|332729793|gb|EGJ61128.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
 gi|332735046|gb|EGJ66131.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
 gi|332739073|gb|EGJ69934.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
          Length = 557

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|153855030|ref|ZP_01996243.1| hypothetical protein DORLON_02249 [Dorea longicatena DSM 13814]
 gi|149752527|gb|EDM62458.1| hypothetical protein DORLON_02249 [Dorea longicatena DSM 13814]
          Length = 718

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I KG V  V+DFG FV     +DGLVHIS+++ ++  K   +VV  GD V VK++  D  
Sbjct: 647 ILKGTVRNVIDFGVFVDIGVHQDGLVHISEITDKKFIKHPLEVVSVGDIVDVKVMSVDLK 706

Query: 680 RGKIKLSMK 688
           + +I+L+MK
Sbjct: 707 KKRIQLTMK 715


>gi|167036328|ref|YP_001671559.1| ribonuclease PH [Pseudomonas putida GB-1]
 gi|189043769|sp|B0KQ94|RNPH_PSEPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166862816|gb|ABZ01224.1| ribonuclease PH [Pseudomonas putida GB-1]
          Length = 240

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL D            AG P+   +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALCDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQ-GEAVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYPEDSAAETDLNVVMTSAG 197


>gi|126208220|ref|YP_001053445.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae L20]
 gi|126097012|gb|ABN73840.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 554

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 193 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 251

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 252 TRVSLGLKQLGQD 264


>gi|326387158|ref|ZP_08208768.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208339|gb|EGD59146.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 566

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I ++ E  +I  G V  + D+GAFV   G  DGL+H++ +
Sbjct: 173 IVVSRRAVLEETRAEQRSGLIQNLKE-GQIIDGVVKNITDYGAFVDLGGI-DGLLHVTDM 230

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S +RV   S+V+  GDTV V+++  + D  +I L MK ++ +
Sbjct: 231 SYKRVNHPSEVIAIGDTVRVQIIRINQDTQRISLGMKQLESD 272


>gi|299770392|ref|YP_003732418.1| 30S ribosomal protein S1 [Acinetobacter sp. DR1]
 gi|298700480|gb|ADI91045.1| 30S ribosomal protein S1 [Acinetobacter sp. DR1]
          Length = 557

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
 gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
          Length = 250

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +RDIS   G   +  GS+L   G+T+ +   +L     E     L G  R
Sbjct: 10  LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSL----TEGVPRWLRGEGR 65

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 66  GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 125

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL ++               P++  VA ++ G++    D +
Sbjct: 126 DVLQADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGII----DTV 181

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D++  ED     D  V  T SG
Sbjct: 182 PMLDLAYVEDVRAETDMNVVVTGSG 206


>gi|145220318|ref|YP_001131027.1| 30S ribosomal protein S1 [Prosthecochloris vibrioformis DSM 265]
 gi|145206482|gb|ABP37525.1| SSU ribosomal protein S1P [Chlorobium phaeovibrioides DSM 265]
          Length = 602

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           N  +KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 400 NTRHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFD 459



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV + D+GAFV      +GLVHIS++S T+ +      V  G  V   +L+ D D  
Sbjct: 317 QGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHT 376

Query: 682 KIKLSMKVVDQN 693
           K+ LSMK V+++
Sbjct: 377 KLSLSMKRVNED 388



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D  +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV     + V +
Sbjct: 223 DSIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVV 281

Query: 675 LDFDDRGK-IKLSMK 688
           + FD+  K + L MK
Sbjct: 282 VGFDENTKRVSLGMK 296


>gi|294793636|ref|ZP_06758773.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
 gi|294455206|gb|EFG23578.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
          Length = 632

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  + KG+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALSKSPWDVAEETLHVGDVIKGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|262278924|ref|ZP_06056709.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus RUH2202]
 gi|262259275|gb|EEY78008.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus RUH2202]
          Length = 557

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|85859093|ref|YP_461295.1| 30S ribosomal protein S1P [Syntrophus aciditrophicus SB]
 gi|85722184|gb|ABC77127.1| SSU ribosomal protein S1P [Syntrophus aciditrophicus SB]
          Length = 586

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  S+ E E   E   ++ ++ E   + +G +  + D+G F+   G  DGL+H++ 
Sbjct: 189 NVVLSRRSILEQEREVEKQETLANISE-GVVVEGIIKNITDYGLFIDLGGI-DGLLHVTD 246

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +S  R+ K S+    GD + VK+L FD ++ ++ L +K + +N
Sbjct: 247 ISWGRITKPSEAFNRGDKITVKVLSFDREKERVSLGLKQLTEN 289



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  + +FG FV      +GLVHIS+LS +RV   S++   GD V   +   D +G
Sbjct: 477 IVSGKVTNLTEFGIFVEVEEGIEGLVHISELSHKRVKTASEIFSIGDAVSAVVKSVDVKG 536

Query: 682 -KIKLSMKVVDQN 693
            KI+LS+K  + N
Sbjct: 537 RKIRLSIKDTEVN 549



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVW 671
           IT+   V  I +G+VV + D+GAFV      +GL+H+S++  T  +   S V+  G  V 
Sbjct: 294 ITEQYPVGAIVEGKVVNLTDYGAFVELAPGVEGLIHVSEMFWTREIRHPSKVLSLGQNVK 353

Query: 672 VKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           V +LD +   K I L +K   Q T  P
Sbjct: 354 VMILDVNKENKRISLGLK---QTTDNP 377



 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + KG +  V +FG FV      DGLVH+S +S  +RV   S++ K+G  +   +L+ D +
Sbjct: 390 LIKGVIRNVTNFGIFVGVEDGIDGLVHVSDISWKQRVKHPSEIYKKGQEIEAVVLNIDVE 449

Query: 680 RGKIKLSMKVVDQN 693
             K  L +K +++N
Sbjct: 450 SEKFSLGIKQIEKN 463


>gi|53728751|ref|ZP_00348225.1| COG0539: Ribosomal protein S1 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|303251468|ref|ZP_07337644.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303252341|ref|ZP_07338507.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302648800|gb|EFL78990.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302649700|gb|EFL79880.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 554

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 193 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 251

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 252 TRVSLGLKQLGQD 264


>gi|313159195|gb|EFR58568.1| ribosomal protein S1 [Alistipes sp. HGB5]
          Length = 630

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +++I S     E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV   
Sbjct: 217 AELEAQKQVIMSKL---EKGQILEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVNHP 272

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            ++V     + V +LDFDD + +I L +K   Q T  P
Sbjct: 273 EEIVALDQKIQVVILDFDDAKKRIALGLK---QLTAHP 307



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L   DR +
Sbjct: 322 KGRVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTL-DREE 380

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 381 RKMSLGI 387


>gi|296134058|ref|YP_003641305.1| ribonuclease PH [Thermincola sp. JR]
 gi|296032636|gb|ADG83404.1| ribonuclease PH [Thermincola potens JR]
          Length = 239

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R +      ++   GS L   GDT+ I   T+    +++    + G  + 
Sbjct: 3   RNDGRANDQLRPVKITRHYIKHAEGSVLIEMGDTKVICTATV----EDKVPPFMKGEGKG 58

Query: 373 DFMMHYNFLP-CATGEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP  A   + R  A  +   R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WITAEYGMLPRSAATRIPREAAKGKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA       GV    P+   +A +++G V +G+   IL 
Sbjct: 119 VIQADGGTRTASITGAFVALVDALRHQVDQGVLEKFPVLDYMAAVSVGKV-NGE---ILL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED +  +D  V  T  G
Sbjct: 175 DLAFSEDSVAEVDMNVVMTRGG 196


>gi|293608243|ref|ZP_06690546.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828816|gb|EFF87178.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122025|gb|ADY81548.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus PHEA-2]
          Length = 557

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|257869443|ref|ZP_05649096.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
 gi|257803607|gb|EEV32429.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
          Length = 450

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR + ++R +  +  + +   GS +   GDT  I   T+  R      DS  G   
Sbjct: 1   MRHDGRKAGSIRPVEIKTNVFKHPEGSVVISFGDTTVICSATIEDRVPPFLRDSGKGW-- 58

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 59  --VTAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A I++G++ D      +
Sbjct: 117 DVIQADGGTRTASITGAFVALRLAIDQLLTNHELTEDPIKEHLAAISVGILPDN---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+  +ED    +D  +  T+SG
Sbjct: 174 TDLDYEEDSAAAVDMNLVMTESG 196


>gi|255320506|ref|ZP_05361687.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
 gi|262378398|ref|ZP_06071555.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
 gi|255302478|gb|EET81714.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
 gi|262299683|gb|EEY87595.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
          Length = 557

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|254429454|ref|ZP_05043161.1| ribosomal protein S1 [Alcanivorax sp. DG881]
 gi|196195623|gb|EDX90582.1| ribosomal protein S1 [Alcanivorax sp. DG881]
          Length = 482

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE---------IMAIPPDQ------IRN 565
           L + K  R  +  E+ K   E  +  G  + +V+         I A  P        +R+
Sbjct: 6   LSREKAKRAEVWGELEKAFDEDEIVKGMISGKVKGGFTVDIGPIRAFLPGSLVDIRPVRD 65

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE--AARE-MIRSITDVPEVNKI 622
           V  + GK +   V +   K N      V ++  ++ E E  A RE ++ S+ +  EV   
Sbjct: 66  VAHLEGKELDFKVIKLDPKRN-----NVVVSRRAVMEAEHSAEREQLLESLQEGMEV--- 117

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + VK+L F DR K
Sbjct: 118 -KGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEIVEVGQEIDVKVLKF-DREK 174

Query: 683 IKLSM 687
           +++S+
Sbjct: 175 MRVSL 179



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 197 PEGTRV-KAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVEIGDEVEVMIL 255

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D DR +I L +K    N
Sbjct: 256 DIDEDRRRISLGIKQCQSN 274


>gi|189219063|ref|YP_001939704.1| ribosomal protein S1 [Methylacidiphilum infernorum V4]
 gi|189185921|gb|ACD83106.1| Ribosomal protein S1 [Methylacidiphilum infernorum V4]
          Length = 449

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  +I  +PP  ++     G  +   IV+ +  + N      V ++   + E E  ++
Sbjct: 120 FLPASQIDIVPPKNLKEY--EGATLTCKIVKISEERKN------VVLSRREIVEAERNQK 171

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++ +  V  V  + KG V  V DFGAF+   G  DGL+HI+ +S  R+   S+++K G 
Sbjct: 172 RLQFLEKV-HVGDLVKGVVKNVTDFGAFIDLDGI-DGLIHITDMSWGRINHPSEILKVGQ 229

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            + V ++D D ++ ++ L +K   Q T  P
Sbjct: 230 EIEVVVIDVDREKERVSLGLK---QKTPNP 256



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV +  +GAF+      +GL+HIS++S T+++ K S+V+  G  V   +LD + +  
Sbjct: 271 KGKVVNLAPYGAFIELEPGIEGLIHISEISWTQKITKPSEVLSMGQEVEAIVLDLNKEEQ 330

Query: 682 KIKLSMKVVDQN 693
           K+ LS+K ++ N
Sbjct: 331 KLSLSLKALEVN 342



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + KG+V     +GA+V      DG +H++ LS T ++   S+V+K+G+ +  K+L+ D  
Sbjct: 356 LIKGKVKNFSAYGAYVELENGLDGFIHVNDLSWTRKINHPSEVLKKGEQIEAKVLEIDKT 415

Query: 681 G-KIKLSMKVVDQNTGKPI 698
             KI L +K + ++  K I
Sbjct: 416 NQKILLGIKQLTEDPWKEI 434


>gi|21702576|gb|AAM75973.1|AF481102_9 ribosomal protein S1 [Candidatus Tremblaya princeps]
          Length = 518

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V ++  S+ E   A    R +  + +   + +G +  + D+GAF+   G  DGL+HI+
Sbjct: 164 GNVVLSRRSVIERRQAENRNRLLASLGD-GDVVQGVIKNITDYGAFIDL-GGLDGLLHIT 221

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            +S  R+   S V+  GD + VK+L F DR K ++S+
Sbjct: 222 DISWRRIRHPSQVLSVGDRITVKVLKF-DRTKTRVSL 257


>gi|50085438|ref|YP_046948.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
 gi|49531414|emb|CAG69126.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
          Length = 557

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 257

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I           GS L   G+T+ IV  ++    +++    L GT +
Sbjct: 1   MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASV----EDKVPPFLKGTGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ +P A+      EV R G+PS R     RL  R++   +        T+ I 
Sbjct: 57  GWITAEYSMIPRASETRSLREVVR-GSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG + +A++ G+ +A+ DA +           P+   VA I++G V++     I
Sbjct: 116 CDVIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISIGKVRNE----I 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D++  ED    +D  +  T  G
Sbjct: 172 VLDLNYAEDSNAQVDMNLVMTGKG 195


>gi|56709090|ref|YP_165135.1| S1 RNA-binding domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680775|gb|AAV97440.1| S1 RNA binding domain protein [Ruegeria pomeroyi DSS-3]
          Length = 765

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  ITD+     + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G  
Sbjct: 636 VEDITDL-RPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQV 694

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           + V + + D  R +I LSM+
Sbjct: 695 IKVTVTEIDVPRKRIGLSMR 714


>gi|323445343|gb|EGB02000.1| hypothetical protein AURANDRAFT_18312 [Aureococcus anophagefferens]
          Length = 88

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +   G V  V+++GAFV+     DGLVHIS++S  RV      +  GD V V+++D D D
Sbjct: 1   EFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLD 60

Query: 680 RGKIKLSMKVVDQNTGKP 697
           +  + L+M      T  P
Sbjct: 61  KATLGLAMNTYRDPTAPP 78


>gi|299133261|ref|ZP_07026456.1| ribonuclease PH [Afipia sp. 1NLS2]
 gi|298593398|gb|EFI53598.1| ribonuclease PH [Afipia sp. 1NLS2]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G+++   GS +   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSGRAPDELRPVSLERGVVKYAEGSCMVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +  R  A + ++ G      RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHDRVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWVALADC 140


>gi|262370393|ref|ZP_06063719.1| ribosomal protein S1 [Acinetobacter johnsonii SH046]
 gi|262314735|gb|EEY95776.1| ribosomal protein S1 [Acinetobacter johnsonii SH046]
          Length = 558

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDKERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMK 688
           I L +K
Sbjct: 429 ISLGIK 434


>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
 gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|257868302|ref|ZP_05647955.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257874425|ref|ZP_05654078.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257877907|ref|ZP_05657560.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
 gi|257802416|gb|EEV31288.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257808589|gb|EEV37411.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257812073|gb|EEV40893.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
          Length = 162

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V V +   
Sbjct: 19  EVGAKLKGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLSVGDEVTVLVTAI 78

Query: 678 DDRGKIKLSMK 688
            + GKI LS++
Sbjct: 79  GNDGKIGLSIR 89


>gi|37520556|ref|NP_923933.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
 gi|35211550|dbj|BAC88928.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
          Length = 320

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +NK+  GQVV      +  +GAF+   G   GL+HIS++S + +     V   GD V V 
Sbjct: 193 MNKLEAGQVVIGRVRGIKPYGAFIDIGGV-SGLLHISEISHDHIETPHSVFNVGDEVKVM 251

Query: 674 LLDFD-DRGKIKLSMKVVDQNTG 695
           ++D D +RG+I LS K +++  G
Sbjct: 252 VIDLDAERGRISLSTKQLEETPG 274


>gi|262375356|ref|ZP_06068589.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
 gi|262309610|gb|EEY90740.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
          Length = 558

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQMNND 439


>gi|165976156|ref|YP_001651749.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876257|gb|ABY69305.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 554

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 193 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 251

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 252 TRVSLGLKQLGQD 264


>gi|294650534|ref|ZP_06727891.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
 gi|292823531|gb|EFF82377.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
          Length = 560

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|291043584|ref|ZP_06569300.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
 gi|291012047|gb|EFE04036.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
          Length = 570

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 204 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 263 QRVSLGMK 270



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 285 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 343

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 344 EIDEGRRRISLGMKQCQAN 362



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 379 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 438

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 439 ISLGIK---QLEGDPF 451


>gi|226952952|ref|ZP_03823416.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
 gi|226836273|gb|EEH68656.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
          Length = 560

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439


>gi|293398896|ref|ZP_06643061.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
 gi|291610310|gb|EFF39420.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
          Length = 570

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 204 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 263 QRVSLGMK 270



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 285 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 343

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 344 EIDEGRRRISLGMKQCQAN 362



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 379 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 438

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 439 ISLGIK---QLEGDPF 451


>gi|262372480|ref|ZP_06065759.1| ribosomal protein S1 [Acinetobacter junii SH205]
 gi|262312505|gb|EEY93590.1| ribosomal protein S1 [Acinetobacter junii SH205]
          Length = 560

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++
Sbjct: 197 GTIKNLTDYGAFVDLGGI-DGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D  G +
Sbjct: 369 GTIKSITDFGIFIGLSGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNR 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++ +
Sbjct: 429 ISLGIKQLNSD 439



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ D +
Sbjct: 279 IVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQN 693
           R +I L +K    N
Sbjct: 339 RRRISLGIKQTRAN 352


>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
 gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|258616327|ref|ZP_05714097.1| ribonuclease PH/Ham1 protein [Enterococcus faecium DO]
          Length = 253

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|205372247|ref|ZP_03225061.1| hypothetical protein Bcoam_01870 [Bacillus coahuilensis m4-4]
 gi|205375697|ref|ZP_03228484.1| hypothetical protein Bcoam_22430 [Bacillus coahuilensis m4-4]
          Length = 141

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM- 687
           +  +FGAFV     + GLVHIS+++   V   +D +K GD V VK+L+ +  GKI LS+ 
Sbjct: 4   RYTNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVTVKVLNVESDGKIGLSIR 63

Query: 688 KVVDQ 692
           K VD+
Sbjct: 64  KAVDK 68


>gi|239827937|ref|YP_002950561.1| ribonuclease PH [Geobacillus sp. WCH70]
 gi|259494121|sp|C5D5M7|RNPH_GEOSW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239808230|gb|ACS25295.1| ribonuclease PH [Geobacillus sp. WCH70]
          Length = 255

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+++ +R +  +   ++   GS     GDT+ I   ++    D++    + G  +
Sbjct: 1   MRIDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASI----DDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATEQRNVRESSKGKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P++  +A  ++G+  D +  IIL
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFAKLMEEKKLDELPVNDFLAATSVGI--DPEHGIIL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  +  T +G
Sbjct: 175 -DLNYAEDARAEVDMNIVMTGAG 196


>gi|118566913|gb|ABL01768.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F DR + 
Sbjct: 83  KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKF-DRERT 140

Query: 684 KLSM 687
           ++S+
Sbjct: 141 RVSL 144


>gi|306824877|ref|ZP_07458221.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433088|gb|EFM36060.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 119

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++DFD+  GK 
Sbjct: 9   GRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVVDFDEYTGKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSIRTLEE 77


>gi|293365818|ref|ZP_06612523.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307703312|ref|ZP_07640257.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315613501|ref|ZP_07888408.1| S1 RNA binding domain protein [Streptococcus sanguinis ATCC 49296]
 gi|291315642|gb|EFE56090.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307623178|gb|EFO02170.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315314192|gb|EFU62237.1| S1 RNA binding domain protein [Streptococcus sanguinis ATCC 49296]
          Length = 119

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++DFD+  GK 
Sbjct: 9   GRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVVDFDEYTGKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSIRTLEE 77


>gi|308389421|gb|ADO31741.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha710]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|303285536|ref|XP_003062058.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456469|gb|EEH53770.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 432

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 18/98 (18%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD-----------VV 664
           P V  I +G+V  V  FG FV   G  RDGLVH + +  E   +  D             
Sbjct: 35  PAVGAILRGRVASVRPFGIFVRMDGFRRDGLVHCTHVGEELTFRREDSDDAKVMAMEYFH 94

Query: 665 KEGDTVWVKLLDFDDRG------KIKLSMKVVDQNTGK 696
            +  +VWVK++D    G      KI LSMK+VDQ  GK
Sbjct: 95  PKDASVWVKVIDVHRDGYTGGNVKIALSMKLVDQADGK 132



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 18/100 (18%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLS-----------TERVAKTSD 662
           D PE+N  ++  V +V  +G FV   G R +GLV   Q+S            E+V     
Sbjct: 166 DPPELNSTHRATVREVKPYGVFVQMEGYRKNGLVPTHQVSDFLEFAREDADEEKVRGIEG 225

Query: 663 VVKEGDTVWVKLLDFDDRG------KIKLSMKVVDQNTGK 696
           V+  G++ WVK+++    G      K+  S+K+ DQ+TG+
Sbjct: 226 VIGRGESCWVKVVEIKGGGYANDPVKVTCSLKLADQSTGE 265


>gi|121635013|ref|YP_975258.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
 gi|120866719|emb|CAM10472.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
          Length = 570

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 204 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 263 QRVSLGMK 270



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 285 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 343

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 344 EIDEGRRRISLGMKQCQAN 362



 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 379 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 438

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 439 ISLGIK---QLEGDPF 451


>gi|325136195|gb|EGC58803.1| ribosomal protein S1 [Neisseria meningitidis M0579]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESSEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|314933658|ref|ZP_07841023.1| ribosomal protein S1 [Staphylococcus caprae C87]
 gi|313653808|gb|EFS17565.1| ribosomal protein S1 [Staphylococcus caprae C87]
          Length = 392

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + +G VV++ +FGAFV    A  GLVHIS++  + +   S+ ++ G  V VK+L  D+
Sbjct: 279 DDVIEGTVVRLANFGAFVEIAPAVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              +I LS+K
Sbjct: 339 ENERISLSIK 348



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVE 68

Query: 671 -WVKLLDFDDR 680
            +V  ++FD+ 
Sbjct: 69  AYVTKIEFDEE 79



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  G+V ++ +FGAF+   G  DGLVH+S+LS E V     VV  GD 
Sbjct: 196 VIDGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVESPEQVVSVGDN 242


>gi|240121501|ref|ZP_04734463.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID24-1]
 gi|240128444|ref|ZP_04741105.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
 gi|317164447|gb|ADV07988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 333 EIDEGRRRISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|229143040|ref|ZP_04271477.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST24]
 gi|228640429|gb|EEK96822.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST24]
          Length = 722

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 654 EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 713

Query: 683 IKLSM 687
           + LS+
Sbjct: 714 VALSI 718


>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
 gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
          Length = 245

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 41/237 (17%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD-------- 364
           R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE   + D        
Sbjct: 11  RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVAAHPDYWLVRLIS 69

Query: 365 ------SLSGTQRN-------DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
                  L G  R          +   +F   +TG+  R     RR      + R+ +  
Sbjct: 70  KKAKREGLRGRSRTKVSKSTAKMLWMADF---STGDRRRKPKGDRRSTEISLVIRQTMEA 126

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            +         + I  ++ ++DG +  A +  ++LAL DAG+P+   V   +        
Sbjct: 127 SILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCS-------- 178

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAK 525
                +D++  ED  G  D  V        +T +QMD K+     E +M +A++  K
Sbjct: 179 -----ADLNYIEDSAGGPDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCK 230


>gi|282878652|ref|ZP_06287421.1| 30S ribosomal protein S1 [Prevotella buccalis ATCC 35310]
 gi|281299197|gb|EFA91597.1| 30S ribosomal protein S1 [Prevotella buccalis ATCC 35310]
          Length = 591

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA ++ I S     E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 197 AELEAQKKEIISKL---EKGQILEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV   + + V +LDFDD  K I L +K
Sbjct: 253 HEVVSLDEKINVVILDFDDEKKRIALGLK 281



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +  GD V   +L  D  DR
Sbjct: 302 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDREDR 361

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 362 -KMSLGIK 368


>gi|258545130|ref|ZP_05705364.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
 gi|258519649|gb|EEV88508.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + K  V  + D+GAF+   G  DGL+HI+ ++ +R+   S+VV  GD V VK+L FD +R
Sbjct: 193 VVKAVVKNLTDYGAFLDIGGV-DGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDRER 251

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 252 ARVSLGLK 259



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KGQ+  + DFG F+   G  DGL+H+S LS +   + +    ++G  V   +L  D +R 
Sbjct: 367 KGQIKSITDFGVFIGLEGGIDGLIHLSDLSWDENGEEAVRHYQKGQEVEAVILAIDAERE 426

Query: 682 KIKLSMKVVDQNT 694
           +I L +K + Q+T
Sbjct: 427 RISLGVKQLSQDT 439



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN   +G+V  + D+G+FV      +GLVH+S++  T +       V  G  V V +L+ 
Sbjct: 275 VNSQTRGKVTNIADYGSFVEIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVDVMILEI 334

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L MK    N
Sbjct: 335 DPERRRISLGMKQCQPN 351


>gi|240080493|ref|ZP_04725036.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
 gi|268596628|ref|ZP_06130795.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
 gi|268682369|ref|ZP_06149231.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
 gi|268550416|gb|EEZ45435.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
 gi|268622653|gb|EEZ55053.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|194334594|ref|YP_002016454.1| 30S ribosomal protein S1 [Prosthecochloris aestuarii DSM 271]
 gi|194312412|gb|ACF46807.1| RNA binding S1 domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 588

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 392 LHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQDLEVKVLKFD 449



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S T+ +   S  V  G  V V +L+ D D  K
Sbjct: 308 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLGQEVEVVILNIDKDHTK 367

Query: 683 IKLSMKVVDQN 693
           + LSMK V ++
Sbjct: 368 LSLSMKRVTED 378



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AA+  EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 200 LEEEYAAKREEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRI 254

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              S+VV+    + V ++ FD D  ++ L MK
Sbjct: 255 NHPSEVVELDQPIKVVVVGFDEDTKRVSLGMK 286


>gi|116749549|ref|YP_846236.1| 30S ribosomal protein S1 [Syntrophobacter fumaroxidans MPOB]
 gi|116698613|gb|ABK17801.1| SSU ribosomal protein S1P [Syntrophobacter fumaroxidans MPOB]
          Length = 596

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 598 SSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E  RE ++S T    E  K+ +G V  + D+G FV   G  DGL+HI+ +S  R
Sbjct: 198 SRRALLEKEREQMKSQTLANLEDGKVVEGIVKNITDYGVFVDLGGI-DGLLHITDMSWGR 256

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V   S++ + GD + V +L FD D  ++ L +K
Sbjct: 257 VGHPSELFQIGDRIKVMVLSFDRDHERVSLGLK 289



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           G+VV + D+GAFV      +GL+H+S++S T++V   S V+  GD V   +L  +   K 
Sbjct: 311 GRVVSLTDYGAFVEIEEGVEGLIHVSEMSWTKKVRHPSKVLNVGDEVEAVVLSINPENKR 370

Query: 683 IKLSMKVVDQN 693
           I L MK ++ N
Sbjct: 371 ISLGMKQLEPN 381



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 616 VPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +PE   +  +  G +  V DFG FV      +GLVH+S++S E++       K  + +  
Sbjct: 473 IPERYPLGSVISGPITNVTDFGLFVELEEGIEGLVHVSEISKEKIKSPVGQYKTAERITA 532

Query: 673 KLLDFDDRG-KIKLSMKVVDQ 692
           K+++   +  KI LS+K V++
Sbjct: 533 KVINISPKDRKIGLSIKKVEE 553



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+      DGLVHIS +S T+RV   S+V ++   V   +L+ D D  +
Sbjct: 398 GKIKNITDFGVFIGIDEGIDGLVHISDISWTKRVKHPSEVFRKNQEVQAIVLNIDKDNER 457

Query: 683 IKLSMKVVDQNTGKPI 698
             L +K ++ +  + I
Sbjct: 458 FSLGIKQLEPDPWESI 473


>gi|56707348|ref|YP_169244.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669818|ref|YP_666375.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456419|ref|ZP_03664892.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370028|ref|ZP_04986035.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874185|ref|ZP_05246895.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56603840|emb|CAG44816.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320151|emb|CAL08199.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568273|gb|EDN33927.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840184|gb|EET18620.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158480|gb|ADA77871.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 455 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 515 SITLSIKAVDEDN 527


>gi|325128402|gb|EGC51285.1| ribosomal protein S1 [Neisseria meningitidis N1568]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 333 EIDEGRRRISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|315651185|ref|ZP_07904215.1| YhgF like protein [Eubacterium saburreum DSM 3986]
 gi|315486481|gb|EFU76833.1| YhgF like protein [Eubacterium saburreum DSM 3986]
          Length = 717

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  V+DFGAFV     +DGLVHIS+LS + +    + V  GD V V++   D  +
Sbjct: 648 ILKGTVRNVIDFGAFVDIGVHQDGLVHISKLSKKFIKHPLEAVSVGDIVEVRVDSVDLKK 707

Query: 681 GKIKLSM 687
            +I LSM
Sbjct: 708 KRISLSM 714


>gi|307256763|ref|ZP_07538542.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306864811|gb|EFM96715.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 567

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 206 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 264

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 265 TRVSLGLKQLGQD 277


>gi|307249953|ref|ZP_07531925.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858013|gb|EFM90097.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 567

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 206 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 264

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 265 TRVSLGLKQLGQD 277


>gi|307247720|ref|ZP_07529758.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307252296|ref|ZP_07534193.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307261206|ref|ZP_07542881.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306855750|gb|EFM87915.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306860218|gb|EFM92234.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306868937|gb|EFN00739.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 567

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 206 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 264

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 265 TRVSLGLKQLGQD 277


>gi|306829841|ref|ZP_07463028.1| S1 RNA binding domain protein [Streptococcus mitis ATCC 6249]
 gi|331266024|ref|YP_004325654.1| RNA binding protein, putative [Streptococcus oralis Uo5]
 gi|304427852|gb|EFM30945.1| S1 RNA binding domain protein [Streptococcus mitis ATCC 6249]
 gi|326682696|emb|CBZ00313.1| RNA binding protein, putative [Streptococcus oralis Uo5]
          Length = 119

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++DFD+  GK 
Sbjct: 9   GRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVVDFDEYTGKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSIRTLEE 77


>gi|240113139|ref|ZP_04727629.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
 gi|254493933|ref|ZP_05107104.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
 gi|268599220|ref|ZP_06133387.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
 gi|268603906|ref|ZP_06138073.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
 gi|226512973|gb|EEH62318.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
 gi|268583351|gb|EEZ48027.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
 gi|268588037|gb|EEZ52713.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|223043234|ref|ZP_03613281.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis
           SK14]
 gi|222443445|gb|EEE49543.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis
           SK14]
          Length = 392

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + +G VV++ +FGAFV    A  GLVHIS++  + +   S+ ++ G  V VK+L  D+
Sbjct: 279 DDVIEGTVVRLANFGAFVEIAPAVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              +I LS+K
Sbjct: 339 ENERISLSIK 348



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVE 68

Query: 671 -WVKLLDFDDR 680
            +V  ++FD+ 
Sbjct: 69  AYVTKIEFDEE 79



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  G+V ++ +FGAF+   G  DGLVH+S+LS E V     VV  GD 
Sbjct: 196 VIDGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVESPEQVVSVGDN 242


>gi|59801032|ref|YP_207744.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
 gi|239999160|ref|ZP_04719084.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
 gi|240013932|ref|ZP_04720845.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI18]
 gi|240016374|ref|ZP_04722914.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA6140]
 gi|240115895|ref|ZP_04729957.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
 gi|240125932|ref|ZP_04738818.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
 gi|260440290|ref|ZP_05794106.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
 gi|268594992|ref|ZP_06129159.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
 gi|268601567|ref|ZP_06135734.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
 gi|268684527|ref|ZP_06151389.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
 gi|268686837|ref|ZP_06153699.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
 gi|59717927|gb|AAW89332.1| putative 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
 gi|268548381|gb|EEZ43799.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
 gi|268585698|gb|EEZ50374.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
 gi|268624811|gb|EEZ57211.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
 gi|268627121|gb|EEZ59521.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
 gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
          Length = 256

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR ++ +R +    G      GS L   G+T+ +   ++         DS  G   
Sbjct: 17  TRADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGW-- 74

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E     S  G    R     RL  RA+   +        T+ I  
Sbjct: 75  --LTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDC 132

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D +  
Sbjct: 133 DVLQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGII----DGVPC 188

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D+  +ED    +D  VA     +TA    ++I G  EN
Sbjct: 189 LDLPYEEDSRADVDMNVA-----MTAEGRFVEIQGTGEN 222


>gi|325204302|gb|ADY99755.1| ribosomal protein S1 [Neisseria meningitidis M01-240355]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 333 EIDEGRRRISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
 gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RDI       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTASV----ENKVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +TG  SRMG  + R    GR      L  R++   +  +A   +++ I
Sbjct: 57  GWITAEYGMLPRSTG--SRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G  +AL+DA             P+ + +A  ++G+ K      
Sbjct: 115 DCDVIQADGGTRTAAITGGCVALVDALNHLVKEGRLKTSPLKQMIAAFSVGVYKG----T 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  TD G
Sbjct: 171 PVLDLDYPEDSEAETDMNVIMTDQG 195


>gi|118496773|ref|YP_897823.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           U112]
 gi|194324082|ref|ZP_03057857.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           FTE]
 gi|208779955|ref|ZP_03247298.1| ribosomal protein S1 [Francisella novicida FTG]
 gi|254372138|ref|ZP_04987631.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375284|ref|ZP_04990764.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
 gi|118422679|gb|ABK89069.1| 30S ribosomal protein S1 [Francisella novicida U112]
 gi|151569869|gb|EDN35523.1| 30S ribosomal protein S1 [Francisella novicida GA99-3549]
 gi|151573002|gb|EDN38656.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
 gi|194321979|gb|EDX19462.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           FTE]
 gi|208743959|gb|EDZ90260.1| ribosomal protein S1 [Francisella novicida FTG]
 gi|328676233|gb|AEB27103.1| SSU ribosomal protein S1p [Francisella cf. novicida Fx1]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 455 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 515 SIALSIKAVDEDN 527


>gi|299139798|ref|ZP_07032970.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX8]
 gi|298598152|gb|EFI54318.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX8]
          Length = 654

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   ++ G V  + D+GAFV   G  DGL+HI+ +S  R+    D+V  GD + VK+L F
Sbjct: 273 EEGSVFTGVVKNLTDYGAFVDM-GGLDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKF 331

Query: 678 D-DRGKIKLSMK 688
           D ++ ++ L  K
Sbjct: 332 DKEKQRVSLGFK 343



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           ++ D   +  + +G+V  + DFGAF+      DGLVH+S LS T+R+   S+V+K+G+ V
Sbjct: 439 ALEDKYPIGAVIEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKGEKV 498



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDR 680
           +G+V+ V D+GAFV      +GLVH+S+++ ++R+   S +VK GD V   +L    +DR
Sbjct: 364 RGRVLSVTDYGAFVELEQGIEGLVHVSEMTWSKRMKHPSKMVKPGDIVDTIILSVNPNDR 423

Query: 681 GKIKLSMKVVDQN 693
            +I L MK +  N
Sbjct: 424 -RISLGMKQLQDN 435


>gi|254443813|ref|ZP_05057289.1| S1 RNA binding domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198258121|gb|EDY82429.1| S1 RNA binding domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 779

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + S+ D+ E  K+  G V  V  FGAF+     +DGL HISQLS   V   ++VVK 
Sbjct: 630 KEGVNSMADLTEGMKLT-GVVTNVTAFGAFIDIGVHQDGLAHISQLSDSFVKDPNEVVKV 688

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           G  V   + + D  R +I LS+K V
Sbjct: 689 GQKVSATVTEVDVARKRIGLSLKSV 713


>gi|161870174|ref|YP_001599344.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
 gi|161595727|gb|ABX73387.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
 gi|261392418|emb|CAX49960.1| 30S ribosomal protein S1 [Neisseria meningitidis 8013]
 gi|319410568|emb|CBY90937.1| 30S ribosomal protein S1 [Neisseria meningitidis WUE 2594]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|126697717|ref|YP_001086614.1| putative RNA-binding protein [Clostridium difficile 630]
          Length = 716

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G  +K     V+DFGAFV      DGLVH S++S   V     +V  GD
Sbjct: 635 TDVLKIEDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGD 694

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK++  D ++ ++ LSMK
Sbjct: 695 IVDVKVIGIDLNKKRVALSMK 715


>gi|218768323|ref|YP_002342835.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
 gi|121052331|emb|CAM08662.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQDTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|313884922|ref|ZP_07818674.1| Tex-like protein N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619613|gb|EFR31050.1| Tex-like protein N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 725

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + ++ D+ E+    +G V  V+DFG FV     +DGLVHIS+LS + +   SDVV  
Sbjct: 643 RDDVMTMEDL-EIGMQLQGVVRNVVDFGTFVDIGVKQDGLVHISRLSKKFIKHPSDVVSV 701

Query: 667 GDTVWVKLLDFD 678
           GD + V++++ D
Sbjct: 702 GDILEVEVVELD 713


>gi|294670875|ref|ZP_06735731.1| hypothetical protein NEIELOOT_02579 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307362|gb|EFE48605.1| hypothetical protein NEIELOOT_02579 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 578

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 212 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 270

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 271 QRVSLGIK 278



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 293 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 351

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 352 EIDEDRRRISLGMKQCQAN 370



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ 
Sbjct: 386 KGAVKSITDFGVFVGLPGNIDGLVHLSDLSWTETGEEAVRKYKKGEEVETVVLAIDVEKE 445

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 446 RISLGIK 452


>gi|254805102|ref|YP_003083323.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
 gi|254668644|emb|CBA06288.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|302346248|ref|YP_003814546.1| 30S ribosomal protein S1 [Prevotella melaninogenica ATCC 25845]
 gi|302151016|gb|ADK97277.1| 30S ribosomal protein S1 [Prevotella melaninogenica ATCC 25845]
          Length = 594

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 200 AELEAQRKEIISHL---EKGQILEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 255

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
            +VV     + V +LDFD+  K I L +K + Q+
Sbjct: 256 HEVVALDQKINVVILDFDEEKKRIALGLKQLTQH 289



 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 305 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDER 364

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 365 KMSLGIKQLKEDPWEAI 381


>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
 gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
          Length = 249

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +     
Sbjct: 7   LLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKG---- 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYT- 422
              T+ ND +++  +         R   P   R+        ++A+   + ++  +P + 
Sbjct: 62  -KKTEGNDLIINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAI-KSELYPRSQ 119

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  E+ ++DG++   ++  ++LAL+DAG+ +++ V      L K     I L+DIS  
Sbjct: 120 IDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSN---IPLTDISHI 176

Query: 483 EDHLGHMDFKVAG--TDSGITAMQM 505
           E+  G     +A   T   I  M+M
Sbjct: 177 EEVSGGPKLTIAALPTAEKIAFMEM 201


>gi|190150052|ref|YP_001968577.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263385|ref|ZP_07545001.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189915183|gb|ACE61435.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871263|gb|EFN02991.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 567

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 206 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 264

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 265 TRVSLGLKQLGQD 277


>gi|187932250|ref|YP_001892235.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187713159|gb|ACD31456.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 455 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 515 SITLSIKAVDEDN 527


>gi|325119608|emb|CBZ55161.1| hypothetical protein NCLIV_055860 [Neospora caninum Liverpool]
          Length = 1205

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF---CGARDGLVHISQL--STERVAKTSDVVKEGDTVWVKLLD 676
           IY+G V KV++FG FV      G R GL+HI+ +  +  R  +  DVV     V VK+L 
Sbjct: 226 IYEGVVDKVVEFGCFVRLEFDEGTRQGLLHIADMVKTDGRPVQPQDVVHRNMPVKVKILG 285

Query: 677 FDDRGKIKLSMKVVDQNTGK 696
                KI LSM+ VDQ TG+
Sbjct: 286 IAG-SKISLSMREVDQETGE 304


>gi|307245600|ref|ZP_07527686.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254556|ref|ZP_07536390.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307259010|ref|ZP_07540741.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306853302|gb|EFM85521.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862493|gb|EFM94453.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867034|gb|EFM98891.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 567

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 206 VVTGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 264

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 265 TRVSLGLKQLGQD 277


>gi|261880726|ref|ZP_06007153.1| 30S ribosomal protein S1 [Prevotella bergensis DSM 17361]
 gi|270332500|gb|EFA43286.1| 30S ribosomal protein S1 [Prevotella bergensis DSM 17361]
          Length = 590

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +   R I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 197 AELEAQK---REIISHLEKGQVLEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +VV+    + V +LDFD +R +I L +K
Sbjct: 253 HEVVELDQKIKVVILDFDEERKRIALGLK 281



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +  GD V   +L   DR +
Sbjct: 302 KGKVVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLHVGDEVEAVILTL-DRQE 360

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 361 RKISLGI 367


>gi|240118193|ref|ZP_04732255.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 333 EIDEGRRRISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|255073571|ref|XP_002500460.1| predicted protein [Micromonas sp. RCC299]
 gi|226515723|gb|ACO61718.1| predicted protein [Micromonas sp. RCC299]
          Length = 294

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 6/58 (10%)

Query: 625 GQVVKVMDFGAFVHF------CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            QVV + DFGAFV            +GL+HIS+LS  RVA   D+++ GD V VK+LD
Sbjct: 102 AQVVSLSDFGAFVELSQDDPQAPRLEGLIHISELSWSRVAHPRDILRVGDEVDVKVLD 159


>gi|224534437|ref|ZP_03675015.1| ribosomal protein S1 [Borrelia spielmanii A14S]
 gi|224514539|gb|EEF84855.1| ribosomal protein S1 [Borrelia spielmanii A14S]
          Length = 551

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           +++ I KG+V K++ FGA +       G +HIS  S  RV K+  +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVAKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQMVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K +++N
Sbjct: 330 IDKENQKISLGIKQINEN 347


>gi|33152424|ref|NP_873777.1| 30S ribosomal protein S1 [Haemophilus ducreyi 35000HP]
 gi|33148647|gb|AAP96166.1| 30S ribosomal protein S1 [Haemophilus ducreyi 35000HP]
          Length = 555

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++
Sbjct: 194 VITGTVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEK 252

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K + Q+
Sbjct: 253 TRVSLGLKQLGQD 265


>gi|328675326|gb|AEB28001.1| SSU ribosomal protein S1p [Francisella cf. novicida 3523]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 455 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 515 SIALSIKAVDEDN 527


>gi|325138272|gb|EGC60841.1| ribosomal protein S1 [Neisseria meningitidis ES14902]
 gi|325198453|gb|ADY93909.1| ribosomal protein S1 [Neisseria meningitidis G2136]
 gi|325200073|gb|ADY95528.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
 gi|325201988|gb|ADY97442.1| ribosomal protein S1 [Neisseria meningitidis M01-240149]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 333 EIDEGRRRISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|164686704|ref|ZP_02210732.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
 gi|164604094|gb|EDQ97559.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
          Length = 449

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+DGR+ + +RD+       +   GS     GDT+ +   ++    +++    L  T  
Sbjct: 2   ARIDGREFDQIRDLKITRNYTKYAEGSVFIEMGDTKVLCNASI----EDKVPPFLRNTGT 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREI-GHG----RLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP +T +  ++   SR +I G      RL  RAI  V+        T+ I 
Sbjct: 58  GWINAEYSMLPRST-QQRKIRDASRGKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A++DA            +P+   V+ I++G+V +G+    
Sbjct: 117 CDVIQADGGTRTASITGAFVAVLDAINKLHKEKAIKHMPVRNFVSAISVGIV-NGE---Y 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+  +ED    +D  +  TD G
Sbjct: 173 LLDLCYEEDSNAQVDMNIIMTDKG 196


>gi|254368625|ref|ZP_04984641.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121528|gb|EDO65719.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 455 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 515 SITLSIKAVDEDN 527


>gi|115315499|ref|YP_764222.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|169656779|ref|YP_001429450.2| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|115130398|gb|ABI83585.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|164551847|gb|ABU62494.2| ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 574

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 212 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 270

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 271 QRISLGIK 278



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 374 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 433

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 434 AVLVSVNTDLERIALSMKQLSEDPFKNFI 462



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 473 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 532

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 533 SITLSIKAVDEDN 545


>gi|89257160|ref|YP_514522.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           LVS]
 gi|254366882|ref|ZP_04982920.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
 gi|290953358|ref|ZP_06557979.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313405|ref|ZP_06804012.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144991|emb|CAJ80351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           LVS]
 gi|134252710|gb|EBA51804.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
          Length = 556

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLKGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 625 GQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G+V KV D GA V        DG + IS++S E      D + EG  V  ++++ D + +
Sbjct: 455 GKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514

Query: 683 -IKLSMKVVDQNT 694
            I LS+K VD++ 
Sbjct: 515 SITLSIKAVDEDN 527


>gi|295134296|ref|YP_003584972.1| RNA binding protein with S1 RNA-binding domain [Zunongwangia
           profunda SM-A87]
 gi|294982311|gb|ADF52776.1| putative RNA binding protein with S1 RNA-binding domain
           [Zunongwangia profunda SM-A87]
          Length = 708

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E IR ITD+    ++  G V  + +FG FV     + GLVHIS+LS   V   + +V+  
Sbjct: 627 ESIREITDLKPGMRL-PGLVNNITNFGCFVDIGLKQSGLVHISKLSNTYVNDVTQIVRLN 685

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
             V V +L+ D DR +I+LSM
Sbjct: 686 QEVEVTVLEVDLDRKRIQLSM 706


>gi|282858267|ref|ZP_06267453.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
 gi|282588976|gb|EFB94095.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
          Length = 729

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGL+HISQL+ + V+  + VV     V VK+++ D  R +I
Sbjct: 661 GIVTNITNFGAFVDLGVHQDGLIHISQLADKFVSDPNSVVHLQQHVRVKIIEVDLCRKRI 720

Query: 684 KLSMKVVDQ 692
            LSMK + Q
Sbjct: 721 GLSMKHIKQ 729


>gi|260881013|ref|ZP_05403387.2| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
 gi|260850179|gb|EEX70186.1| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
          Length = 349

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +I +G+V+K+ DFGAF+      DGL+ + +L+ +R+ +  + V  GD V VK+L  D 
Sbjct: 276 GQIIEGKVIKLTDFGAFMEIEPGFDGLIPMGELADKRIERADEAVHVGDIVRVKILRIDT 335

Query: 679 DRGKIKLSM 687
            R +I LS+
Sbjct: 336 KRKRISLSI 344



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLL 675
           E  +  +G V +++D+GAF+   G  DGL HIS L+  RV   SDV++ G    V+VK +
Sbjct: 189 EAGQTVRGTVKRLVDYGAFIDIGGV-DGLAHISDLAWHRVKHPSDVLEVGQELDVYVKSV 247

Query: 676 DFDDRGKIKLSMK 688
           D +++ +I LS+K
Sbjct: 248 DPENK-RISLSVK 259


>gi|254282959|ref|ZP_04957927.1| ribosomal protein S1 [gamma proteobacterium NOR51-B]
 gi|219679162|gb|EED35511.1| ribosomal protein S1 [gamma proteobacterium NOR51-B]
          Length = 557

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + VK+L FD +R +
Sbjct: 196 KGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVEVGQELDVKILKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +++ K +V  + D+G F       +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 275 PEGSRV-KARVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   QN
Sbjct: 334 DIDEERRRISLGIKQCTQN 352



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S +S   V + +    K+GD +   +L  D +R +
Sbjct: 369 GTIKSITDFGIFIGLEGNIDGLVHLSDISWNEVGEEAVRNYKKGDEIETVILSIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGVKQLEED 439


>gi|149177996|ref|ZP_01856593.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
 gi|148843189|gb|EDL57555.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
          Length = 641

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G VV VM +GAFV      +GLVHIS++S T+R+   S++V  GD V V +L  + D+ +
Sbjct: 313 GHVVNVMSYGAFVKLEDGIEGLVHISEMSWTKRINHPSELVNIGDEVEVVVLGVNKDKQE 372

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 373 ISLGMKQTQSN 383



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNK---IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           TD+P+  +   I +G V K+ +FG FV      +GL+HIS+L+  +V    D+VK G+ +
Sbjct: 474 TDIPQKYQPGAIVQGTVTKITNFGVFVELEEELEGLLHISELADHKVENPEDIVKVGEKL 533

Query: 671 WVKLL--DFDDRGKIKLSMKV 689
            VK+L  D DDR KI LS K+
Sbjct: 534 DVKILRVDTDDR-KIGLSRKL 553



 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 8/79 (10%)

Query: 618 EVNKIY------KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           EV K Y      KG V  + ++GAF+      DGL+H+S +S T +++  S+V+K+GD +
Sbjct: 387 EVTKKYPEGAQVKGTVRNLTNYGAFIELEEGVDGLLHVSDMSWTRKISHASEVMKKGDEI 446

Query: 671 WVKLLDFD-DRGKIKLSMK 688
              ++  D +R +I L +K
Sbjct: 447 ECLVISVDEERKRIALGLK 465


>gi|296314512|ref|ZP_06864453.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
 gi|296838822|gb|EFH22760.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVGIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|293554040|ref|ZP_06674640.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
 gi|291601822|gb|EFF32074.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
          Length = 451

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
          Length = 233

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR+D R++  +R I +++ LL +  GS+ F   D  +++    G  E     + +S    
Sbjct: 2   VRIDKRNNNQIRSIESELALLNKADGSAKF-SLDNSSVLAAIYGPVEVNPRKEKISKA-- 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RIVSEIT 430
               +   F P +       G  + +      L R AI  V+  T   P TL  I+ ++ 
Sbjct: 59  ---TVEVVFTPDS-------GNQNYQTKEQESLIRNAIESVI-MTMLHPRTLISIIIQVY 107

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            +DGS    ++  + LAL+DAG+ ++  +A I++    DG  ++
Sbjct: 108 STDGSIVSCSINAACLALLDAGIELNSLIASISLSFNSDGQIYL 151


>gi|240123741|ref|ZP_04736697.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 193 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 251

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 252 QRVSLGMK 259



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 274 PQATRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 332

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 333 EIDEGRRRISLGMKQCQAN 351



 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 368 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 427

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 428 ISLGIK---QLEGDPF 440


>gi|261346766|ref|ZP_05974410.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
 gi|282565165|gb|EFB70700.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
          Length = 237

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I       +   GS L   GDT+ +   T+    ++     L G  +
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCTATV----EDGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+VK       L
Sbjct: 117 DVIQADGGTRTASISGACVALVDALNNMIAQGKITKSPLKAMVAAVSVGIVKQE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V   D G
Sbjct: 173 CDLEYVEDSAAETDMNVVMMDDG 195


>gi|15677167|ref|NP_274320.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
 gi|81784541|sp|Q9JZ44|RS1_NEIMB RecName: Full=30S ribosomal protein S1
 gi|7226541|gb|AAF41676.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
 gi|325208261|gb|ADZ03713.1| ribosomal protein S1 [Neisseria meningitidis NZ-05/33]
          Length = 561

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 195 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 253

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 254 QRVSLGMK 261



 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 276 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 334

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 335 EIDEGRRRISLGMKQCQAN 353



 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 370 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 429

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 430 ISLGIK---QLEGDPF 442


>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 246

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 20/221 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGRD   +R +  + G+L   +GS+    G+ + +  V  G +E       L+ T + 
Sbjct: 16  RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAV-YGPKEATPR--HLADTNKA 72

Query: 373 DFMMHYNFLPCAT-GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
                Y+  P ++ G+  R G P+RR I   ++ +     V+    +FP + + I  EI 
Sbjct: 73  IIKCRYSMAPFSSMGDHGRSG-PNRRAIEISKVTKEVFENVV-MLEEFPGSEIEIFIEIL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           +SDG +  A +  +++AL +AG+ +   V  ++ G +   D+ +++ D++  ED+    D
Sbjct: 131 QSDGGTRAAGITAAAVALANAGIHVKDMVYAVSAGRI---DEHVVI-DVNMIEDNYSDAD 186

Query: 491 FKV--AGTDSGITAMQMDMKIGGISE----NIMVMALQQAK 525
             V  +  D+ +  +QMD   GG ++      M M L+  K
Sbjct: 187 MPVSISPKDNSVLLLQMD---GGFTKEQFGEAMKMILESGK 224


>gi|255099305|ref|ZP_05328282.1| putative RNA-binding protein [Clostridium difficile QCD-63q42]
 gi|328887513|emb|CAJ66965.2| putative S1 RNA-binding domain-containing protein [Clostridium
           difficile]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G  +K     V+DFGAFV      DGLVH S++S   V     +V  GD
Sbjct: 632 TDVLKIEDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGD 691

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK++  D ++ ++ LSMK
Sbjct: 692 IVDVKVIGIDLNKKRVALSMK 712


>gi|146296019|ref|YP_001179790.1| ribonuclease PH [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166228275|sp|A4XI64|RNPH_CALS8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145409595|gb|ABP66599.1| RNAse PH [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 258

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 24/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ I+  T+    D++      G+  
Sbjct: 1   MRQDQRSYNELRPIKITRNFIKYAEGSCLIEMGNTKVIITATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + +  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIILDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDDKVIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   + G  ++      L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKASVDMNLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQ 232

Query: 536 SKVLSESRLQLG 547
            +VL E    +G
Sbjct: 233 REVLGEDSKLIG 244


>gi|260681923|ref|YP_003213208.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260685521|ref|YP_003216654.1| putative RNA-binding protein [Clostridium difficile R20291]
 gi|260208086|emb|CBA60328.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260211537|emb|CBE01713.1| putative RNA-binding protein [Clostridium difficile R20291]
          Length = 716

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G  +K     V+DFGAFV      DGLVH S++S   V     +V  GD
Sbjct: 635 TDVLKIEDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGD 694

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK++  D ++ ++ LSMK
Sbjct: 695 IVDVKVIGIDLNKKRVALSMK 715


>gi|255305090|ref|ZP_05349262.1| putative RNA-binding protein [Clostridium difficile ATCC 43255]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G  +K     V+DFGAFV      DGLVH S++S   V     +V  GD
Sbjct: 632 TDVLKIEDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGD 691

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK++  D ++ ++ LSMK
Sbjct: 692 IVDVKVIGIDLNKKRVALSMK 712


>gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4]
 gi|189043764|sp|A5G3S1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 25/203 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +E++R++      L+   GS L   GDT+ I   ++    +      L G   
Sbjct: 1   MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASV----EGSVPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT   S     S+ ++G       RL  R++  V+        ++ I 
Sbjct: 57  GWVTAEYSMLPRATHTRSHR-ESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLID 115

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL D           A +P+ + VA +++G+V    D   
Sbjct: 116 CDVIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIV----DGTP 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDS 498
           L D++  ED    +D     T S
Sbjct: 172 LLDLNYVEDSSAEVDMNFVMTSS 194


>gi|87199343|ref|YP_496600.1| 30S ribosomal protein S1 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135024|gb|ABD25766.1| SSU ribosomal protein S1P [Novosphingobium aromaticivorans DSM
           12444]
          Length = 566

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I ++ E  +I  G V  + D+GAFV   G  DGL+H++ +
Sbjct: 173 IVVSRRAVLEETRAEQRSGLIQNLKE-GQIIDGVVKNITDYGAFVDLGGI-DGLLHVTDM 230

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S +RV   S+V+  GDTV V+++  + D  +I L MK ++ +
Sbjct: 231 SYKRVNHPSEVIAIGDTVRVQIIRINQDTQRISLGMKQLESD 272



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V    +G V  + ++GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 283 VGAKLRGTVTNITEYGAFVELEAGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEV 342

Query: 678 D-DRGKIKLSMKVVDQN 693
           D D+ +I L +K   QN
Sbjct: 343 DSDKRRISLGLKQAQQN 359


>gi|89094012|ref|ZP_01166956.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
 gi|89081686|gb|EAR60914.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + ++GAF+   G  DGL+HI+ ++ +R++  S+++  GD + VK++ FD + G+
Sbjct: 196 KGFVKNLTNYGAFIDLGGV-DGLLHITDMAWKRISHPSEMLNPGDEITVKIIKFDKESGR 254

Query: 683 IKLSMK 688
           I L +K
Sbjct: 255 ISLGLK 260



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + ++  + D+G F       +GLVH+S++S T +    S VV+ GD V V +LD D +R 
Sbjct: 281 QARITNLTDYGCFASIEDGVEGLVHVSEMSWTNKNIHPSKVVQIGDEVEVMILDVDEERR 340

Query: 682 KIKLSMKVVDQNTGKPIV 699
           +I L +K   Q T  P V
Sbjct: 341 RISLGIK---QCTANPWV 355



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  V   GA V      +G + +S++S +RV   S V+  GD V  K++  D R 
Sbjct: 453 IVTGKVTSVDAKGAVVELAEGIEGTLKVSEISVDRVEDASSVLNVGDEVEAKIVTLDRRN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  +Q   K  +
Sbjct: 513 RVINLSIKAKEQAEEKAAI 531


>gi|313895526|ref|ZP_07829082.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312975652|gb|EFR41111.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 55

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 4  VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF 56
          + + EIE  GR + +E G++A+Q++GA L  YG+TVVL T     + ++G DF
Sbjct: 1  MQSFEIELGGRNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDF 53


>gi|156537299|ref|XP_001606070.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Nasonia vitripennis]
          Length = 284

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 88/177 (49%), Gaps = 10/177 (5%)

Query: 293 SVFEDIQAKVVRTVMLDK-KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           S++ D+ AK  ++ + ++ K R+D R  + +R +  ++G++ +  GS+    G T+ ++ 
Sbjct: 18  SIYVDLNAKPAKSSIKNELKTRVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTK-VIC 76

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS-RREIGHGRLARRAIH 410
                RE     +  S + + +    + F   AT    R G      E  +  + +RA+ 
Sbjct: 77  SAFDPRE---IPNKTSYSTQGEIFCEFKFASFAT--CKRKGHQQDTEEKEYSLIMQRALE 131

Query: 411 PVLPQTAQFP-YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           P + +  +FP + + + + + ++ GS+  A + G+SLAL +A VP+   V  +  G+
Sbjct: 132 PAVCRH-EFPNFQVDVYALVLDNGGSALGAAIMGASLALANASVPMFGIVTAVTAGI 187


>gi|329120385|ref|ZP_08249052.1| 30S ribosomal protein S1 [Neisseria bacilliformis ATCC BAA-1200]
 gi|327462340|gb|EGF08666.1| 30S ribosomal protein S1 [Neisseria bacilliformis ATCC BAA-1200]
          Length = 559

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 193 VVKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDK 251

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 252 QRVSLGVK 259



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD   V +L+ D DR +
Sbjct: 281 GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEAEVMILEIDEDRRR 340

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 341 ISLGMKQCQAN 351



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV   G  DGLVH+S LS +E   +     K+G+ V   +L  D ++ 
Sbjct: 367 KGAVKSITDFGVFVGLPGNIDGLVHLSDLSWSEAGEEAVRKYKKGEEVEAVVLAIDVEKE 426

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 427 RISLGIK---QLEGDPF 440


>gi|288802929|ref|ZP_06408366.1| ribosomal protein S1 [Prevotella melaninogenica D18]
 gi|288334746|gb|EFC73184.1| ribosomal protein S1 [Prevotella melaninogenica D18]
          Length = 594

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 200 AELEAQRKEIISHL---EKGQILEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 255

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
            +VV     + V +LDFD+  K I L +K + Q+
Sbjct: 256 HEVVALDQKINVVILDFDEEKKRIALGLKQLTQH 289



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 305 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDER 364

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 365 KMSLGIKQLKEDPWEAI 381


>gi|242373783|ref|ZP_04819357.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1]
 gi|242348520|gb|EES40122.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1]
          Length = 399

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + +G VV++ +FGAFV    A  GLVHIS++  + +   S+ ++ G  V VK+L  D+
Sbjct: 286 DDVIEGTVVRLANFGAFVEIAPAVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGIDE 345

Query: 680 RG-KIKLSMK 688
              +I LS+K
Sbjct: 346 ENERISLSIK 355



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 17  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIESPSEVVKVGDEVE 75

Query: 671 -WVKLLDFDDRG 681
            +V  ++FD+  
Sbjct: 76  AYVTKIEFDEEN 87



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  GD
Sbjct: 203 VIDGKVARLTNFGAFIDIGGV-DGLVHVSELSHEHVQSPEEVVSVGD 248


>gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035]
 gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G+L+   GS L   GDT  +   T+    +E+    + G+  
Sbjct: 1   MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATI----EERVPPFVKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R  A + ++ G      RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 DVIQADGGTRCASITGGWVALKLAVQKLMKAGDVLSDPLIDPVAAVSCGI 166


>gi|118566925|gb|ABL01774.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F DR + 
Sbjct: 83  KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKF-DRERT 140

Query: 684 KLSM 687
           ++S+
Sbjct: 141 RVSL 144


>gi|322375583|ref|ZP_08050095.1| S1 RNA binding domain protein [Streptococcus sp. C300]
 gi|321279291|gb|EFX56332.1| S1 RNA binding domain protein [Streptococcus sp. C300]
          Length = 128

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++DFD+  GK 
Sbjct: 18  GRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVVDFDEYTGKA 77

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 78  SLSIRTLEE 86


>gi|254973804|ref|ZP_05270276.1| putative RNA-binding protein [Clostridium difficile QCD-66c26]
 gi|255091191|ref|ZP_05320669.1| putative RNA-binding protein [Clostridium difficile CIP 107932]
 gi|255312848|ref|ZP_05354431.1| putative RNA-binding protein [Clostridium difficile QCD-76w55]
 gi|255515607|ref|ZP_05383283.1| putative RNA-binding protein [Clostridium difficile QCD-97b34]
 gi|255648701|ref|ZP_05395603.1| putative RNA-binding protein [Clostridium difficile QCD-37x79]
 gi|306518821|ref|ZP_07405168.1| putative RNA-binding protein [Clostridium difficile QCD-32g58]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 614 TDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           TDV ++  I +G  +K     V+DFGAFV      DGLVH S++S   V     +V  GD
Sbjct: 632 TDVLKIEDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGD 691

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK++  D ++ ++ LSMK
Sbjct: 692 IVDVKVIGIDLNKKRVALSMK 712


>gi|227354797|ref|ZP_03839214.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
 gi|227165115|gb|EEI49946.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
          Length = 251

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 23/206 (11%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R   R ++ VR I+      +   GS L   GDT+ +   T+    +E     L G
Sbjct: 11  DNTMRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKG 66

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLR 424
             +      Y  LP AT   +   A   ++ G      RL  R++   +   A   +T+ 
Sbjct: 67  QGQGWVTAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTIT 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+V DG   
Sbjct: 127 VDCDVIQADGGTRTASISGACVALVDALNKMVAEGKLKKSPLKSMVAAVSVGIV-DGQP- 184

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             L D+   ED     D  V   D G
Sbjct: 185 --LCDLEYVEDSAAETDMNVVMIDDG 208


>gi|124802732|ref|XP_001347578.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23495160|gb|AAN35491.1|AE014833_62 RNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1290

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL--STERVAKTSDVVKEGDTVWV 672
           ++N I+ G + K+ DFG FV F    G ++GLVH + +  + +RV   ++  K    V V
Sbjct: 327 KLNNIFNGTINKITDFGLFVSFKTNEGYKEGLVHATDILPNRKRVVNMNEKFKRNMKVKV 386

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K+    ++ KI L+M  VDQ TGK +V
Sbjct: 387 KVKGIFNQ-KISLNMSEVDQKTGKNLV 412


>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
 gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +      L+   GS+L   G+T+ +   T+    +E       GT   
Sbjct: 3   RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATV----EEGVPRWRRGTGEG 58

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  R++  V+   A   YT+ +  +
Sbjct: 59  WVTAEYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+DA             P++  VA +++G+V+         
Sbjct: 119 VLQADGGTRTAAITGAYVALVDAVRYLRKQLDLKTNPLTGSVAAVSVGIVQGQPRL---- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           D++  ED +   D  V  T +G       ++I G +EN
Sbjct: 175 DLNYLEDSVAETDMNVVVTGTG-----EFIEIQGTAEN 207


>gi|15613094|ref|NP_241397.1| hypothetical protein BH0531 [Bacillus halodurans C-125]
 gi|10173144|dbj|BAB04250.1| BH0531 [Bacillus halodurans C-125]
          Length = 728

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFG FV     +DGLVHIS+L+   +    +VV  G+  TVWV+ +D   +G
Sbjct: 656 QGTVRNVVDFGVFVDIGVKQDGLVHISKLANRYIKHPLEVVTVGEIVTVWVEDVDI-KKG 714

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 715 RIALTM 720


>gi|221054143|ref|XP_002261819.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193808279|emb|CAQ38982.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1218

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF----CGARDGLVHISQL--STERVAKTSDVVKEG-DTVW 671
           VN I+ G+V K+MDFG FV F     G ++GLVH + +  + +RV   S+  ++G     
Sbjct: 244 VNNIFSGKVSKIMDFGMFVSFRTEPGGYKEGLVHCTDILPNRKRVVNMSEKFQKGMKVKV 303

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
                F +  KI L+M  VDQ TGK +V
Sbjct: 304 KVKAIFGE--KINLNMSEVDQKTGKDLV 329


>gi|94987197|ref|YP_595130.1| 30S ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731446|emb|CAJ54809.1| ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
          Length = 574

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  ++D+G FV      +GLVHIS++S T ++   S +V +GD V V +L  D D+ +
Sbjct: 297 GKVTNLVDYGVFVELESGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKR 356

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 357 ISLGMKQVKPN 367



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           V  I KG +  + DFG FV      +GLVH+S+LS++++   S++ K+G+ +  K++
Sbjct: 465 VGGIVKGIITNITDFGLFVEVEEGIEGLVHVSELSSKKIKSPSEIYKDGEEIQAKII 521



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  V ++G FV   G  DGL+HI+ +S +R+    ++V  G  + +K+L FD +  K+
Sbjct: 212 GKVKNVTEYGVFVDLGGL-DGLLHITDMSWKRIRHPREMVNLGQELELKVLSFDKENQKV 270

Query: 684 KLSMK 688
            L +K
Sbjct: 271 SLGLK 275



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I +G V  + +FG F+      DGL+H+S +S T++V   +++ K GDTV  K+L  D  
Sbjct: 381 ILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVLTVDQE 440

Query: 681 G-KIKLSMK 688
             K  L +K
Sbjct: 441 NEKFTLGIK 449


>gi|160903236|ref|YP_001568817.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360880|gb|ABX32494.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 123

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           KG+VV +  FGAF+      +G VHIS++S + V + S  +K GD V  K++     GK 
Sbjct: 13  KGKVVDIKKFGAFLELENGEEGFVHISKISKKYVREISSFLKIGDEVQGKVIGRTKDGKY 72

Query: 684 KLSMKVVD---QNTGK 696
           ++S+K  D   ++TGK
Sbjct: 73  EISLKDFDEEKEDTGK 88


>gi|328463197|gb|EGF34930.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 124

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDR 680
            +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD  TVW++ +D  +R
Sbjct: 53  LEGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDL-NR 111

Query: 681 GKIKLSM 687
            +I+L+M
Sbjct: 112 ERIQLTM 118


>gi|198276801|ref|ZP_03209332.1| hypothetical protein BACPLE_03004 [Bacteroides plebeius DSM 17135]
 gi|198270326|gb|EDY94596.1| hypothetical protein BACPLE_03004 [Bacteroides plebeius DSM 17135]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R++ D+ E  ++  G V  + +FG FV      +GLVH+SQL+   V+  +DVV+    
Sbjct: 630 VRTLDDLQEGMEL-PGIVTNITNFGCFVDIGIKENGLVHVSQLADRFVSNPADVVRIHQH 688

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK++  D +R +I+L+MK
Sbjct: 689 VRVKVMSIDHERKRIQLTMK 708


>gi|296118694|ref|ZP_06837270.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968183|gb|EFG81432.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 242

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGRD + +R +           GS L   G+T+ +   ++     EQ V         
Sbjct: 6   RADGRDLDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV-----EQGVPRFKKDSGE 60

Query: 373 DFMM-HYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
            ++   Y  LP AT +     S  G    R     RL  R++   +  +A    T+++  
Sbjct: 61  GWLTAEYAMLPSATHDRMPRESMKGKVKGRTHEISRLIGRSLRAAVDLSALGENTIQLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA           G P+ +P+A +++G+V+      + 
Sbjct: 121 DVLQADGGTRTASITGAYVALADAIAVLKEQGVVPGEPLLQPIAAVSVGMVEGN----VC 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V   +SG
Sbjct: 177 LDLPYEEDSRAEVDLNVVMQESG 199


>gi|317154744|ref|YP_004122792.1| 30S ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944995|gb|ADU64046.1| ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2]
          Length = 623

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 614 TDVP---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           T VP    V ++  G V  + DFG FV      +GLVH+S++S +++   S++ KEGDT+
Sbjct: 456 TQVPGKYPVGQMITGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKIKSPSEIYKEGDTI 515

Query: 671 WVKLLDFD-DRGKIKLSMK 688
             K++    D  ++ LS+K
Sbjct: 516 EAKVIHVSADERRLGLSIK 534



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G +  + D+GAFV      +GLVHIS++S T ++   S +VK GD V V +L  D D+
Sbjct: 294 FTGVITNLADYGAFVELENGVEGLVHISEMSWTRKLRHPSQMVKVGDEVEVVVLGVDQDK 353

Query: 681 GKIKLSMKVVDQN 693
            +I L MK +  N
Sbjct: 354 KRISLGMKQISPN 366



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  + ++G F+   G  DGL+HI+ +S +R+    ++V+ GD + +K+L FD D  K+
Sbjct: 211 GKVKNITEYGVFIDL-GGLDGLLHITDMSWKRIKHPKEMVQLGDELELKILSFDRDAQKV 269

Query: 684 KLSMK 688
            L +K
Sbjct: 270 SLGLK 274



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           + +G +  + +FG F+      DGL+H+S +S T+++   S+V K GD V  K+L  D
Sbjct: 380 VLEGAIKNITEFGVFIGIEEGIDGLIHVSDISWTKKIRHPSEVYKSGDAVQAKVLTVD 437


>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
 gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
          Length = 249

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 89/182 (48%), Gaps = 13/182 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +     
Sbjct: 7   LLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKGM--- 62

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYT- 422
              T+ ND +++  +         R   P   R+ +       +A+   + ++  +P + 
Sbjct: 63  --KTETNDVIINCQYSQATFATAERKNRPRGDRKSLEFKMYLEQALSAAI-KSELYPRSQ 119

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  
Sbjct: 120 IDIYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSS---IPLTDISHT 176

Query: 483 ED 484
           E+
Sbjct: 177 EE 178


>gi|69246345|ref|ZP_00603901.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
 gi|68195298|gb|EAN09749.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
          Length = 451

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|319942540|ref|ZP_08016850.1| 30S ribosomal protein S1 [Sutterella wadsworthensis 3_1_45B]
 gi|319803943|gb|EFW00861.1| 30S ribosomal protein S1 [Sutterella wadsworthensis 3_1_45B]
          Length = 574

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+VV+ G  +  K+L FD ++
Sbjct: 209 IVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVVQVGQEITAKVLKFDKEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 CRVSLGLK 275



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV+ G+ V V +L
Sbjct: 290 PKGTRLF-GKVTNITDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVQLGEEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D DR +I L MK    N
Sbjct: 349 DIDEDRRRISLGMKQCKAN 367



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DR 680
           GQ+  + DFG F+   G  DGLVH+S LS     +  D V   K+GD V   +L  D +R
Sbjct: 384 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWNESGE--DAVRNFKKGDEVEAVVLAIDTER 441

Query: 681 GKIKLSMKVVDQNTGKPI 698
            +I L +K   Q  G P 
Sbjct: 442 ERISLGIK---QLAGDPF 456


>gi|87120344|ref|ZP_01076239.1| hypothetical protein MED121_09133 [Marinomonas sp. MED121]
 gi|86164447|gb|EAQ65717.1| hypothetical protein MED121_09133 [Marinomonas sp. MED121]
          Length = 718

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  I+D+ E  +  +G    +  FG FV     +DGL+HISQL+   V   + +VK GD 
Sbjct: 638 IEKISDLKE-GQTLEGVATNIAAFGVFVDLGVHQDGLIHISQLTNRFVKDPASLVKVGDI 696

Query: 670 VWVKLLDFDDRGKIKLSMKVV 690
           + V++L+ D++ K ++S+K +
Sbjct: 697 LTVEVLEVDEKRK-RISLKAI 716


>gi|323344269|ref|ZP_08084495.1| YhgF like protein [Prevotella oralis ATCC 33269]
 gi|323094998|gb|EFZ37573.1| YhgF like protein [Prevotella oralis ATCC 33269]
          Length = 709

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E   +  G V  +  FGAFV     +DGLVHISQL+ + V+  + VV   + 
Sbjct: 630 VKTIDDLHE-GMLLPGIVTNITKFGAFVDIGVHQDGLVHISQLANKFVSDPATVVHLHEH 688

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V VK+L  D  R +I L+MK+
Sbjct: 689 VQVKVLAVDMQRRRISLTMKL 709


>gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
 gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
          Length = 272

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 26/245 (10%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R   R ++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G 
Sbjct: 34  RAMRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQ 89

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP ATG   R  A + ++ G      RL  R++  V+   A     + +
Sbjct: 90  NKGWVTAEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISV 149

Query: 426 VSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G+ +AL D           +G  ++  +A I+ G+ +      
Sbjct: 150 DCDVIQADGGTRTAAITGAWVALRDCVEWMKARDMVSGDVLTDHIAAISCGIYES----T 205

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRG--RLHI 531
            + D+  DED     D     T S GI  +Q   +    SE+     +  AK G  RL  
Sbjct: 206 PVLDLDYDEDSTAETDANFVMTGSGGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVD 265

Query: 532 LNEMS 536
           L +M+
Sbjct: 266 LQKMA 270


>gi|116494733|ref|YP_806467.1| transcriptional accessory protein [Lactobacillus casei ATCC 334]
 gi|116104883|gb|ABJ70025.1| Transcriptional accessory protein [Lactobacillus casei ATCC 334]
          Length = 725

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD   VW++L+D   R 
Sbjct: 655 EGTVRNVVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKTVVAIGDIVEVWIELVDL-ARE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708]
 gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708]
          Length = 246

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 21/194 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+S  +R +S      +   GS L   GDTQ +  V++     +     L+GT + 
Sbjct: 5   RPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSV----SDSVPKFLNGTGKG 60

Query: 373 DFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT   +   +   S R     RL  R++   L        TL I +++ 
Sbjct: 61  WLTAEYRMLPSATQKRQERELLKLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + GS +AL  A       GV    P+ + VA +++GL+  G+ F+ L+ I
Sbjct: 121 QADAGTRTTAITGSFVALAHAISQMLQQGVLERSPLCRQVAAVSVGLLA-GEAFLDLNYI 179

Query: 480 SGDEDHLGHMDFKV 493
              ED    +DF V
Sbjct: 180 ---EDVAATVDFNV 190


>gi|206901601|ref|YP_002251093.1| ribosomal protein S1, putative [Dictyoglomus thermophilum H-6-12]
 gi|206740704|gb|ACI19762.1| ribosomal protein S1, putative [Dictyoglomus thermophilum H-6-12]
          Length = 552

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           + P  EI    P  ++N + +G KV         AKV   DD   KI  S + ++E    
Sbjct: 303 YVPMSEISWGRPQDVKNSLKVGDKV--------KAKVLSVDDLNQKIFLS-IKQVEPNPW 353

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            +  I    ++ +I  G+V  + DFG F+      +GL+    +S ER++  SD+ K GD
Sbjct: 354 EV--IDQNYKIGEIVSGKVTNITDFGIFIEIKPGLEGLIPRKLISWERISNISDIFKPGD 411

Query: 669 TVWVKLLDFDDRGKIKLSM 687
            +  K+++ D   K KL++
Sbjct: 412 FIEAKIIEIDKENK-KLTL 429


>gi|325680686|ref|ZP_08160224.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcus
           albus 8]
 gi|324107466|gb|EGC01744.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcus
           albus 8]
          Length = 628

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           K  +V +  FGAF       DGL+HISQ++ +RV   +D++  GD V  ++ + D ++ +
Sbjct: 552 KATIVSITSFGAFAQIIDGIDGLIHISQIANQRVNNVADILAVGDVVDCRITEIDSEKKR 611

Query: 683 IKLSMKVV 690
           I LS + +
Sbjct: 612 ISLSRRAL 619



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + D+G FV   G  DGLV  + LS  R+   SDVV  GD V V + D D +  K
Sbjct: 467 EGVVKSITDYGVFVDL-GGVDGLVRRADLSWNRIKHPSDVVSIGDKVTVTIKDIDPETKK 525

Query: 683 IKLSMKVVDQN 693
           + L+ K   +N
Sbjct: 526 VSLTYKKDSEN 536


>gi|15964129|ref|NP_384482.1| ribonuclease PH [Sinorhizobium meliloti 1021]
 gi|307301274|ref|ZP_07581036.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
 gi|307317945|ref|ZP_07597382.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|21759408|sp|Q92SK2|RNPH_RHIME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15073305|emb|CAC41813.1| Probable ribonuclease PH protein [Sinorhizobium meliloti 1021]
 gi|306896347|gb|EFN27096.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|306903730|gb|EFN34317.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +E+    L    +
Sbjct: 1   MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASL----EEKVPAWLRNGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  R  A + ++ G      RL  R++  V+   A     + I  
Sbjct: 57  GWITAEYGMLPRATGERMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWIALHDC 140


>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
          Length = 247

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 21/194 (10%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D+  R DGR    +R +   +G+  +  GS+   +G+T+ +  +  G  E        S 
Sbjct: 9   DEGYRFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAI-YGPHE-------ASN 60

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-------FPY 421
             R+   +   F+ C   + +   +  R++   G    + +   + QT +       +P 
Sbjct: 61  NMRSRVCLDKCFINCEFSQ-AMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPR 119

Query: 422 T-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           + + I  ++  SDGS   A V  ++LAL+DAG+ +   V   +  L K+      L DI+
Sbjct: 120 SQIDIYLQVLHSDGSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETS----LIDIN 175

Query: 481 GDEDHLGHMDFKVA 494
             E+  G  +F  A
Sbjct: 176 HVEELAGCAEFSAA 189


>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
 gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
          Length = 249

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +     
Sbjct: 7   LLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKA---- 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYT- 422
              ++ ND +++  +         R   P   R+        ++A+   + ++  +P + 
Sbjct: 62  -KKSEGNDLIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAI-KSELYPRSQ 119

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  E+ ++DG++   ++  ++LAL+DAG+ +++ V      L K     I L+DIS  
Sbjct: 120 IDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSN---IPLTDISHI 176

Query: 483 EDHLGHMDFKVAG--TDSGITAMQM 505
           E+  G     +A   T   I  M+M
Sbjct: 177 EEVSGGPKLTIAALPTAEKIAFMEM 201


>gi|257463721|ref|ZP_05628110.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|317061266|ref|ZP_07925751.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|313686942|gb|EFS23777.1| ribonuclease PH [Fusobacterium sp. D12]
          Length = 249

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R+I           GS L   G+T+ I   ++     E+    L  T + 
Sbjct: 3   RLDGRRENQLREIKITRDFNMHAEGSVLIESGNTKVICTASV----SEKVPSFLKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  +P ATGE ++     G  S R +   RL  RA+   +        T+ +  +
Sbjct: 59  WLTAEYCMIPRATGERTQREAAKGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +A+  A             P+   VA +++G  ++     IL 
Sbjct: 119 VIQADGGTRTASITGSFIAMAIAVAKLLKEEILTESPVLSRVAAVSVGKHENS----ILL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED    +D  V   D G
Sbjct: 175 DLNYEEDSSAEVDMNVIQNDLG 196


>gi|290969232|ref|ZP_06560757.1| putative general stress protein 13 [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780738|gb|EFD93341.1| putative general stress protein 13 [Megasphaera genomosp. type_1
           str. 28L]
          Length = 143

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  K+ +G V  +  FGAFV     + GL+HIS+++ E V    D +K  D V VK+L  
Sbjct: 4   EAGKVLEGTVTGITKFGAFVELPDKKVGLIHISEVANEYVKDVHDFLKVQDVVKVKVLAV 63

Query: 678 DDRGKIKLSMK 688
           DD+GKI LS+K
Sbjct: 64  DDKGKIALSIK 74


>gi|255008568|ref|ZP_05280694.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313146296|ref|ZP_07808489.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313135063|gb|EFR52423.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
          Length = 707

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   +  G V  + +FGAFV      +GLVH+SQL+   +   ++VV     
Sbjct: 627 VRTINDLRE-GMVLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V VK+L  D +R +I+L+M +
Sbjct: 686 VTVKVLSIDFERKRIQLTMNI 706


>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
 gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
          Length = 257

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 20  MRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 76  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 135

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 136 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 192 CDLEYVEDSAADTDMNVVMTEEG 214


>gi|323703064|ref|ZP_08114719.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531958|gb|EGB21842.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 667

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           ++  FGAFV      +GLVHIS L+   VAK  +VV EG+ + VK+L  D   K I+LS+
Sbjct: 561 RLAPFGAFVQLEPGVEGLVHISHLADRHVAKPDEVVTEGEEIDVKVLSVDPAEKRIRLSI 620

Query: 688 KVVD 691
           + V+
Sbjct: 621 REVN 624



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E + AR+    +  + E  +  KG V ++ +FGAFV   G  DGL+HIS++
Sbjct: 441 VVVSRKAVLEEQYARKRAELLASIQE-GQTVKGIVRRLTNFGAFVDL-GGLDGLLHISEM 498

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S  R+   S+VV  GD + V +L  D +  KI L  K +  N
Sbjct: 499 SWYRINHPSEVVNVGDEIEVMVLKVDRENEKISLGRKQILPN 540


>gi|320451423|ref|YP_004203519.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
 gi|320151592|gb|ADW22970.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
          Length = 539

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +G+VV +  FGAFV      +GL+HIS+LS T+R    S+VVKEGD V   +L  D
Sbjct: 304 RGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGDEVEAVVLRLD 359



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ +G VV V DFGAFV+  G  DGLVH S+++  R     +V+ +G  V  +++  D 
Sbjct: 215 GQVVEGTVVDVTDFGAFVNL-GPVDGLVHRSEITWGRFNHPKEVIHKGQKVRAQVVSVDP 273

Query: 679 DRGKIKLSMKVV 690
           ++ ++ LS+K +
Sbjct: 274 EKERVNLSIKAL 285



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + KG++  + DFG FV      +GLVH+S+L   R+   + + K+G+ + V +L+ D
Sbjct: 389 VVKGKITGITDFGVFVELEPGMEGLVHVSELDHGRIENPAALFKKGEEMEVVVLNID 445


>gi|227499760|ref|ZP_03929860.1| S1 domain RNA-binding protein [Anaerococcus tetradius ATCC 35098]
 gi|227218146|gb|EEI83412.1| S1 domain RNA-binding protein [Anaerococcus tetradius ATCC 35098]
          Length = 699

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+ +  I D+ E   I KG+V  + DFGAFV      DGLVH+S++S + +    +V+ 
Sbjct: 612 TRKEVMGIDDLKE-GMILKGKVRNITDFGAFVDIGVGVDGLVHVSKISDKFIKNPREVLT 670

Query: 666 EGDTVWVKLLDFDDRG-KIKLSMK 688
               V VK+++ D +  +I LSMK
Sbjct: 671 NAQIVDVKVVEIDKKKERIGLSMK 694


>gi|327439143|dbj|BAK15508.1| predicted RNA binding protein [Solibacillus silvestris StLB046]
          Length = 124

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  +  +GAFV       GLVHIS+++   V   SD +  GD + VK+LD 
Sbjct: 6   EVGDVLTGKVTGIQPYGAFVALDEYTQGLVHISEITYGFVKDVSDFLSVGDEIEVKVLDV 65

Query: 678 D-DRGKIKLSMK 688
           D D+ KI LS++
Sbjct: 66  DTDQKKISLSIR 77


>gi|54307419|ref|YP_128439.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90412679|ref|ZP_01220680.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
 gi|61215939|sp|Q6LVN8|RNPH_PHOPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46911839|emb|CAG18637.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90326254|gb|EAS42673.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
          Length = 238

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   GDT+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             PI   VA +++G+ K G+    +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAVNSMIEKGTLKKSPIKGMVAAVSVGIYK-GE---AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEG 195


>gi|325142504|gb|EGC64906.1| ribosomal protein S1 [Neisseria meningitidis 961-5945]
          Length = 416

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD ++
Sbjct: 116 VIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEK 174

Query: 681 GKIKLSMK 688
            ++ L MK
Sbjct: 175 QRVSLGMK 182



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 197 PQGTRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 255

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D+ R +I L MK    N
Sbjct: 256 EIDEGRRRISLGMKQCQAN 274



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ +
Sbjct: 291 GAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKER 350

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q  G P 
Sbjct: 351 ISLGIK---QLEGDPF 363


>gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Pseudomonas entomophila L48]
          Length = 253

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 24/210 (11%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           V + +  R  GR ++ +R I       +   GS L   GDT+ I  V++    +      
Sbjct: 9   VQVSQMKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRF 64

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPY 421
           L G  +      Y  LP +TGE ++  A   ++ G      RL  R++   L  +     
Sbjct: 65  LKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDI 124

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKD 469
           TL +  ++ ++DG +  A++ G+ +AL DA            G P+   +A +++G+ + 
Sbjct: 125 TLYVDCDVIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQ- 183

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G+  +   D+   ED     D  V  T +G
Sbjct: 184 GEAVL---DLDYLEDSAAETDLNVVMTSAG 210


>gi|327440789|dbj|BAK17154.1| ribosomal protein S1 [Solibacillus silvestris StLB046]
          Length = 380

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V +++ FGAFV      +GLVHISQ+S + +    +V+K+G  V VK+L+ ++  
Sbjct: 275 ILTGTVKRLVTFGAFVEVFPGVEGLVHISQISHKHITTPHEVLKDGQEVEVKVLEVNEAE 334

Query: 682 K-IKLSMKVVDQNTG 695
           K + LS+K + +++ 
Sbjct: 335 KRLALSIKALQEDSA 349



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V ++  FGAF+   G  DGLVHISQ++ E V   S V++EG +V VK+L  D   
Sbjct: 190 MLEGTVQRLAKFGAFIDLGGI-DGLVHISQVAHEHVEDISTVLQEGQSVTVKVLSVDIPN 248

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 249 ERVSLSIK 256


>gi|119505043|ref|ZP_01627119.1| Flagellar biosynthesis protein FliR [marine gamma proteobacterium
           HTCC2080]
 gi|119459025|gb|EAW40124.1| Flagellar biosynthesis protein FliR [marine gamma proteobacterium
           HTCC2080]
          Length = 557

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + VK+L FD +R +
Sbjct: 196 KGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVEVGQEMDVKILKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++   +V  + D+G F       +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 275 PEGARV-NAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D DR +I L +K   QN
Sbjct: 334 DIDEDRRRISLGIKQCTQN 352



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   GA DGLVH+S +S     + +    K+GD +   +L  D +R +
Sbjct: 369 GTIKSITDFGIFIGLDGAIDGLVHLSDISWNETGEEAVRNYKKGDEIETVILSIDPERER 428

Query: 683 IKLSMKVVDQN 693
           I L +K ++++
Sbjct: 429 ISLGVKQMEED 439


>gi|332710577|ref|ZP_08430522.1| transcriptional accessory protein [Lyngbya majuscula 3L]
 gi|332350632|gb|EGJ30227.1| transcriptional accessory protein [Lyngbya majuscula 3L]
          Length = 720

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           +G V  V++FGAFV     +DGLVHISQL+   V     +VK G  V V++++ +++ K 
Sbjct: 650 EGIVTNVVNFGAFVDIGVHQDGLVHISQLADRFVEDPKQIVKVGQVVKVRVMEVNEKLKR 709

Query: 683 IKLSMK 688
           + LSM+
Sbjct: 710 VSLSMR 715


>gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4]
 gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4]
          Length = 262

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R++    G      GS L   G+T+ +   ++    ++       GT  
Sbjct: 3   TREDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASV----EDGVPRWRQGTGL 58

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  S  G    R     RL  R++   +   A    T+ +  
Sbjct: 59  GWLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL+DA              PIS  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDTG 198


>gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1]
 gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1]
          Length = 245

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 25/203 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR    +R +   +       GS+L   G+T+ +   ++    +E     L G QR
Sbjct: 2   VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASV----EEGVPQWLRGQQR 57

Query: 372 NDFMMHYNFLPCATGEVSRM---GAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T + +R    G   R +EI   RL  RA+   +   A   +T+ +  
Sbjct: 58  GWVTGEYALLPRSTAQRTRRERNGVSGRTQEIQ--RLIGRALRAAVSLEALDGFTVTVDC 115

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL             A  P+ + VA ++ G V        L
Sbjct: 116 DVLQADGGTRTASITGGYVALALALHRLTAEGRLASNPLQRAVAAVSAGYVAG----CAL 171

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED +  MD  +  TD G
Sbjct: 172 LDLDYSEDSVADMDCNLVLTDDG 194


>gi|332702711|ref|ZP_08422799.1| ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay]
 gi|332552860|gb|EGJ49904.1| ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay]
          Length = 590

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 21/202 (10%)

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG------EFTPRVEIMAIPP 560
           +KI     N++V      +  R H+  E+ + LSE ++  G      E+   V++  +  
Sbjct: 180 LKINRRRSNVIVSRRVLLEEQREHMRKELLETLSEGQVVTGKVKNITEYGVFVDLGGL-- 237

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE-V 619
           D + ++  M  + IR   E  G    + D+  +K+ S      + +  + + + D  E +
Sbjct: 238 DGLLHITDMSWRRIRHPKEMVG----LGDELELKVLSFDKDNKKVSLGLKQLVPDPWEDI 293

Query: 620 NKIY------KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
            K Y      KG+V  ++D+G+FV      +GLVHIS++S T ++   S +V  GD V V
Sbjct: 294 TKKYPEGARLKGRVTNLVDYGSFVELEPGVEGLVHISEMSWTRKLRHPSQMVHPGDEVEV 353

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +L  D D+ +I L MK +  N
Sbjct: 354 VVLGVDPDKKRISLGMKQIKPN 375



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V    KG V  + DFG FV      +GLVH+S++S ++V   +++ KEG  +  K++   
Sbjct: 473 VGATVKGIVTNITDFGLFVEVEEGIEGLVHVSEISHKKVKNPAELFKEGVEIEAKVIHVS 532

Query: 679 -DRGKIKLSMK 688
            D  ++ LS+K
Sbjct: 533 ADERRLGLSIK 543



 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I +G +  + +FG F+      DGL+H+S +S T+++    ++ K  DTV  K+L  D +
Sbjct: 389 ILEGTIKNITEFGLFIGIEDGIDGLIHVSDISWTKKIRHPGEMYKVSDTVQAKVLTVDKE 448

Query: 680 RGKIKLSMKVVDQN 693
             K  L +K ++++
Sbjct: 449 NEKFTLGVKQLNED 462


>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
 gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
 gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
          Length = 238

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|207725368|ref|YP_002255764.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum MolK2]
 gi|206590604|emb|CAQ37566.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum MolK2]
          Length = 562

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 278 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVTVL 336

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 337 DIDEDKRRISLGMKQCKAN 355



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 197 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 255

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 256 NRVSLGVK 263



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 372 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKER 431

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 432 ISLGIK---QLSGDPF 444


>gi|332703310|ref|ZP_08423398.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332553459|gb|EGJ50503.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 710

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + +I D+ E   +  G V  V  FGAF+     +DGL H+SQ++   V   ++VV+ G
Sbjct: 628 EGVNAIGDL-EPGMVLPGVVTNVTRFGAFIDVGVHQDGLAHVSQIADRYVKDPAEVVRVG 686

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V  ++L+ D +R +I LS+K
Sbjct: 687 QKVTARVLEVDKERKRISLSLK 708


>gi|309800173|ref|ZP_07694359.1| toxin expression - transcriptional accessory protein [Streptococcus
           infantis SK1302]
 gi|308116220|gb|EFO53710.1| toxin expression - transcriptional accessory protein [Streptococcus
           infantis SK1302]
          Length = 686

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  
Sbjct: 611 RQDVLDIKDL-QVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKKFIKHPSQVVSV 669

Query: 667 GD--TVWVK 673
           GD  TVWVK
Sbjct: 670 GDLVTVWVK 678


>gi|302783342|ref|XP_002973444.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
 gi|300159197|gb|EFJ25818.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
          Length = 434

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G   GL+H+SQ+S +R+    +V+  GD + V +L  D
Sbjct: 280 IGSVVVGTVQTIKPYGAFIDL-GGLTGLLHVSQISHDRITTVENVLSPGDKLKVMVLSHD 338

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG+I LS K ++   G
Sbjct: 339 KDRGRISLSTKKLEPTPG 356


>gi|253998815|ref|YP_003050878.1| 30S ribosomal protein S1 [Methylovorus sp. SIP3-4]
 gi|313200902|ref|YP_004039560.1| 30S ribosomal protein S1 [Methylovorus sp. MP688]
 gi|253985494|gb|ACT50351.1| ribosomal protein S1 [Methylovorus sp. SIP3-4]
 gi|312440218|gb|ADQ84324.1| ribosomal protein S1 [Methylovorus sp. MP688]
          Length = 592

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G+ V  K+L FD ++
Sbjct: 226 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLTVGEEVEAKILKFDQEK 284

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 285 NRVSLGIK 292



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS  +  + +    K+GD V   +L  D ++ +
Sbjct: 401 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWNQTGEEAIRNFKKGDEVAAVVLAIDVEKER 460

Query: 683 IKLSMKVVDQN 693
           I L +K +D +
Sbjct: 461 ISLGVKQLDND 471



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +    + + + GD V V +L+ D DR +
Sbjct: 314 GKVTNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRR 373

Query: 683 IKLSMK 688
           + L MK
Sbjct: 374 LSLGMK 379


>gi|302876593|ref|YP_003845226.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307687267|ref|ZP_07629713.1| hypothetical protein Ccel74_03866 [Clostridium cellulovorans 743B]
 gi|302579450|gb|ADL53462.1| RNA binding S1 domain protein [Clostridium cellulovorans 743B]
          Length = 133

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G VV +  FGAFV   G + GLVHIS+++   V    + +KE D V VK+L  ++ G
Sbjct: 8   IVDGVVVNITKFGAFVEVEG-KTGLVHISEVADNYVKDIKEHLKEQDKVKVKVLSVEEDG 66

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 67  KISLSIK 73


>gi|322381181|ref|ZP_08055184.1| hypothetical protein PL1_0093 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154757|gb|EFX47028.1| hypothetical protein PL1_0093 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 159

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   ++ +K  D V VK+++ 
Sbjct: 4   EVGSKLEGKVTGITHFGAFVELEEGVTGLVHISEIADNYVKDVNEHLKIDDKVLVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  GKI LS+K   Q   KP
Sbjct: 64  DKDGKIGLSIK---QTKEKP 80


>gi|320334056|ref|YP_004170767.1| RNA-binding S1 domain-containing protein [Deinococcus maricopensis
           DSM 21211]
 gi|319755345|gb|ADV67102.1| RNA binding S1 domain protein [Deinococcus maricopensis DSM 21211]
          Length = 557

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 7/77 (9%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+V  + +FGAFV      +GLVH+S++S T+RV   ++V+KEGD V   +L  D  DR
Sbjct: 314 KGKVTNLTNFGAFVEIEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAIILRIDPKDR 373

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L ++   Q T  P
Sbjct: 374 -RISLGLR---QTTDDP 386



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           KG+V  + DFG F+      +GL+HIS+L   RV   +D+ K+GD +   +L+ D
Sbjct: 401 KGKVTGLTDFGVFMEIEEGIEGLIHISELDLNRVNNPADLFKKGDEIEAVILNID 455



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           ++G+VV++ DFG FV+  G  DGLVH S+L+  R     DVVK GD V V+++D D  R 
Sbjct: 228 FEGEVVEITDFGVFVNLGGI-DGLVHRSELTFGRFNHPRDVVKVGDKVDVQVIDVDPSRE 286

Query: 682 KIKLSMKVV 690
           +I LSMK +
Sbjct: 287 RINLSMKAL 295


>gi|315195373|gb|EFU25760.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 391

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N   +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDDIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|312903655|ref|ZP_07762831.1| ribonuclease PH [Enterococcus faecalis TX0635]
 gi|310633008|gb|EFQ16291.1| ribonuclease PH [Enterococcus faecalis TX0635]
          Length = 451

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWIAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|288924888|ref|ZP_06418824.1| S1 RNA binding domain protein [Prevotella buccae D17]
 gi|288338078|gb|EFC76428.1| S1 RNA binding domain protein [Prevotella buccae D17]
          Length = 720

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + +FGAFV     +DGLVHISQL+   V+  ++VV+    V VK+++ D  R
Sbjct: 649 VLPGIVTNITNFGAFVDIGVHQDGLVHISQLADRYVSDPNEVVQVHCHVRVKVVEVDLRR 708

Query: 681 GKIKLSMKVVDQ 692
            +I L+M+ V+Q
Sbjct: 709 HRISLTMRGVEQ 720


>gi|320108571|ref|YP_004184161.1| 30S ribosomal protein S1 [Terriglobus saanensis SP1PR4]
 gi|319927092|gb|ADV84167.1| ribosomal protein S1 [Terriglobus saanensis SP1PR4]
          Length = 636

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ +S  R+    D+V+ GD + VK+L F
Sbjct: 260 EEGSIMTGVVKNLTDYGAFVDL-GGLDGLLHITDMSWGRLTHPRDLVQVGDEIQVKVLKF 318

Query: 678 D-DRGKIKLSMK 688
           D ++ ++ L  K
Sbjct: 319 DKEKQRVSLGFK 330



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           + +I +G+V  + DFGAF+      DGLVH+S LS T+R+   S+V+K+G+ V   +L  
Sbjct: 433 IGEIVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKGEKVRAVVLGV 492

Query: 678 DDRGKIKLSMKV 689
           +   + +LS+ V
Sbjct: 493 EPENR-RLSLGV 503



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+++ V D+GAFV      +GLVH+S+++ ++R+   S +VK GD     +L  +  DR
Sbjct: 351 KGRILSVTDYGAFVELEQGIEGLVHVSEMTWSKRMKHPSKMVKPGDEADTIILAVNPTDR 410

Query: 681 GKIKLSMKVVDQN 693
            +I L MK +  N
Sbjct: 411 -RISLGMKQLQDN 422


>gi|302823925|ref|XP_002993610.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
 gi|300138538|gb|EFJ05302.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
          Length = 438

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G   GL+H+SQ+S +R+    +V+  GD + V +L  D
Sbjct: 284 IGSVVVGTVQTIKPYGAFIDL-GGLTGLLHVSQISHDRITTVENVLSPGDKLKVMVLSHD 342

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG+I LS K ++   G
Sbjct: 343 KDRGRISLSTKKLEPTPG 360


>gi|222479439|ref|YP_002565676.1| translation initiation factor 2, alpha subunit [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452341|gb|ACM56606.1| translation initiation factor 2, alpha subunit [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 266

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++  G V ++ DFG FV      D  GL HIS++++  +    D V+EG TV  K+
Sbjct: 7   PEPGELVVGDVDEIADFGVFVDLDEYEDKRGLCHISEVASGWIKNVRDHVREGQTVVAKV 66

Query: 675 LDFDDRG-KIKLSMKVVDQNTGK 696
           LD D+   +I LS+K V+++  K
Sbjct: 67  LDVDESANQIDLSIKDVNEHQRK 89


>gi|315607913|ref|ZP_07882906.1| YhgF like protein [Prevotella buccae ATCC 33574]
 gi|315250382|gb|EFU30378.1| YhgF like protein [Prevotella buccae ATCC 33574]
          Length = 711

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + +FGAFV     +DGLVHISQL+   V+  ++VV+    V VK+++ D  R
Sbjct: 640 VLPGIVTNITNFGAFVDIGVHQDGLVHISQLADRYVSDPNEVVQVHCHVRVKVVEVDLRR 699

Query: 681 GKIKLSMKVVDQ 692
            +I L+M+ V+Q
Sbjct: 700 HRISLTMRGVEQ 711


>gi|205374390|ref|ZP_03227188.1| ribonuclease PH [Bacillus coahuilensis m4-4]
          Length = 247

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R ++ +   L    GS L   G T+ I   ++    +E+    + G  +
Sbjct: 1   MRRNERKVDELRPVTIETDYLIHPEGSVLISIGQTKVICTASV----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  R++  V+  TA    T+ I  
Sbjct: 57  GWVNAEYSMLPRATEKRTIRESSKGKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISK-------PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A   ISK       PV    + I++G+  D +  +IL
Sbjct: 117 DVIQADGGTRTASITGAFIAMTIAIDKISKEKKLPRFPVNDFLSAISVGI--DREKTVIL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+S DED    +D  V  T SG
Sbjct: 175 -DLSYDEDSTARVDMNVVMTGSG 196


>gi|90023323|ref|YP_529150.1| ribonuclease PH [Saccharophagus degradans 2-40]
 gi|123395477|sp|Q21EE1|RNPH_SACD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89952923|gb|ABD82938.1| RNAse PH [Saccharophagus degradans 2-40]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  E +RD++      +   GS L   GDT+ I   ++    +      L G  + 
Sbjct: 3   RPSGRAPEQLRDVTITRQFTRHAEGSVLVCFGDTKVICTASV----EAGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TG  SRMG  + R    GR      L  R++   +  TA   +++ I 
Sbjct: 59  WITAEYGMLPRSTG--SRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA 451
            ++ ++DG +  A++ G+ +AL+DA
Sbjct: 117 CDVIQADGGTRTASITGALVALVDA 141


>gi|49483663|ref|YP_040887.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425540|ref|ZP_05601965.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428199|ref|ZP_05604597.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430829|ref|ZP_05607211.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433588|ref|ZP_05609946.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436429|ref|ZP_05612476.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876]
 gi|282904058|ref|ZP_06311946.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160]
 gi|282905822|ref|ZP_06313677.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908793|ref|ZP_06316611.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911053|ref|ZP_06318855.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914266|ref|ZP_06322053.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899]
 gi|282919189|ref|ZP_06326924.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427]
 gi|282924373|ref|ZP_06332047.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101]
 gi|283958240|ref|ZP_06375691.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501291|ref|ZP_06667142.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510253|ref|ZP_06668961.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809]
 gi|293526848|ref|ZP_06671532.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015]
 gi|295427984|ref|ZP_06820616.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591046|ref|ZP_06949684.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8]
 gi|81651112|sp|Q6GGT5|RS1_STAAR RecName: Full=30S ribosomal protein S1
 gi|49241792|emb|CAG40483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271997|gb|EEV04135.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275040|gb|EEV06527.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278957|gb|EEV09576.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281681|gb|EEV11818.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284711|gb|EEV14831.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876]
 gi|282313760|gb|EFB44153.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101]
 gi|282316999|gb|EFB47373.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427]
 gi|282322334|gb|EFB52658.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899]
 gi|282324748|gb|EFB55058.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327057|gb|EFB57352.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331114|gb|EFB60628.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595676|gb|EFC00640.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160]
 gi|283790389|gb|EFC29206.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920406|gb|EFD97470.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015]
 gi|291096296|gb|EFE26557.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467197|gb|EFF09715.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809]
 gi|295128342|gb|EFG57976.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575932|gb|EFH94648.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8]
 gi|312438121|gb|ADQ77192.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 391

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   D D 
Sbjct: 196 VIDGKVARLTQFGAFIDIGGV-DGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDT 254

Query: 681 GKIKLSMK 688
            +I LS+K
Sbjct: 255 ERISLSIK 262



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N   +G VV++ +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+
Sbjct: 279 NDDIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDE 338

Query: 680 RG-KIKLSMK 688
              ++ LS+K
Sbjct: 339 ENERVSLSIK 348



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVKEGD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVE 68

Query: 671 -WVKLLDFDDRGK 682
            +V  ++FD+  +
Sbjct: 69  AYVTKVEFDEENE 81


>gi|312879621|ref|ZP_07739421.1| RNA binding S1 domain protein [Aminomonas paucivorans DSM 12260]
 gi|310782912|gb|EFQ23310.1| RNA binding S1 domain protein [Aminomonas paucivorans DSM 12260]
          Length = 135

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G V  +  +GAF+     +  +VHIS+L+   + K  DV++    V  K++  D
Sbjct: 14  VGEVVSGTVEHIAPYGAFIRLETGQKAMVHISELAHSYIKKVEDVLELQQKVTAKVIKID 73

Query: 679 DRGKIKLSMKVV 690
           +RG+I LS+K +
Sbjct: 74  ERGRIDLSIKAL 85


>gi|261884195|ref|ZP_06008234.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 172

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  + +FGAFV   GA +GL+H    S +R  K  D++K GD + VK++  DD+ 
Sbjct: 63  IVKGVVTTLTNFGAFVR-VGALEGLLHNEDSSWDRNDKCKDILKTGDEIDVKIIKIDDKN 121

Query: 682 -KIKLSMK 688
            KI LS K
Sbjct: 122 QKISLSQK 129


>gi|325268084|ref|ZP_08134730.1| 30S ribosomal protein S1 [Kingella denitrificans ATCC 33394]
 gi|324980469|gb|EGC16135.1| 30S ribosomal protein S1 [Kingella denitrificans ATCC 33394]
          Length = 563

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+
Sbjct: 199 LVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLRFDQDK 257

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 258 QRVSLGLK 265



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+ ++++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 280 PQGHRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 338

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 339 DIDEDKRRISLGMKQCQPN 357



 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV   G  DGLVH+S LS TE   +     K+G+ V   +L  D ++ 
Sbjct: 373 KGAVKSITDFGVFVGLPGNIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKE 432

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 433 RISLGIK---QLEGDPF 446


>gi|257878167|ref|ZP_05657820.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257881049|ref|ZP_05660702.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257889634|ref|ZP_05669287.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257892426|ref|ZP_05672079.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260559214|ref|ZP_05831400.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|261207747|ref|ZP_05922432.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289565822|ref|ZP_06446264.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|293563126|ref|ZP_06677591.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|294614004|ref|ZP_06693934.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|294617101|ref|ZP_06696767.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|294623312|ref|ZP_06702174.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|314939893|ref|ZP_07847099.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|314943740|ref|ZP_07850479.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|314949696|ref|ZP_07853014.1| ribonuclease PH [Enterococcus faecium TX0082]
 gi|314953242|ref|ZP_07856181.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|314993678|ref|ZP_07859026.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|314997405|ref|ZP_07862356.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|257812395|gb|EEV41153.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257816707|gb|EEV44035.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257825994|gb|EEV52620.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257828805|gb|EEV55412.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260074971|gb|EEW63287.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|260078130|gb|EEW65836.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289162365|gb|EFD10223.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|291593111|gb|EFF24690.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|291596638|gb|EFF27865.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|291597280|gb|EFF28469.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|291604904|gb|EFF34373.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|313588540|gb|EFR67385.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|313591852|gb|EFR70697.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|313594708|gb|EFR73553.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|313597603|gb|EFR76448.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|313640856|gb|EFS05436.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|313643954|gb|EFS08534.1| ribonuclease PH [Enterococcus faecium TX0082]
          Length = 451

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    +      L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----ENSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|169350338|ref|ZP_02867276.1| hypothetical protein CLOSPI_01099 [Clostridium spiroforme DSM 1552]
 gi|169293121|gb|EDS75254.1| hypothetical protein CLOSPI_01099 [Clostridium spiroforme DSM 1552]
          Length = 125

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 616 VPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           VP+VN+  I   ++  +  +GAF        GL+HIS++S + V      VK G+ + VK
Sbjct: 2   VPKVNRGDIVDVKITGIQPYGAFASLPDNSTGLIHISEISDKFVKSIDSFVKVGEFIKVK 61

Query: 674 LLDFDDR-GKIKLSMKVVD 691
           ++DFD+     KLS+K +D
Sbjct: 62  VIDFDEETNHAKLSLKAID 80


>gi|91775280|ref|YP_545036.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91775424|ref|YP_545180.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91709267|gb|ABE49195.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
 gi|91709411|gb|ABE49339.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
          Length = 569

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G+ V  K+L FD ++
Sbjct: 203 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLTVGEEVEAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +    + + + GD V V +L+ D DR +
Sbjct: 291 GKVTNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRR 350

Query: 683 IKLSMKVVDQN 693
           + L MK    N
Sbjct: 351 LSLGMKQCQAN 361



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS  +  + +    K+GD +   +L  D ++ +
Sbjct: 378 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWNQPGEEAIRNFKKGDELEAVVLSIDVEKER 437

Query: 683 IKLSMKVVDQN 693
           I L +K +D +
Sbjct: 438 ISLGVKQLDSD 448


>gi|159472705|ref|XP_001694485.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
 gi|40641370|emb|CAE51165.1| ribosomal protein S1 homologue [Chlamydomonas reinhardtii]
 gi|158276709|gb|EDP02480.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
          Length = 436

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V  V  +GAF+   G   GL+H+SQ+S +RV     +++EGD + V +L  D
Sbjct: 310 VGDVVAGVVQSVKPYGAFIDLGGVT-GLLHVSQISHDRVLVLDKILQEGDKIKVMILSQD 368

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 369 RERGRVTLSTKKLEPTPG 386


>gi|326938027|gb|AEA13923.1| transcription accessory protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 72

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G+
Sbjct: 4   EGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGR 63

Query: 683 IKLSM 687
           + LSM
Sbjct: 64  VALSM 68


>gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13]
 gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40]
 gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 240

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+ + +A  ++G+ + G+  + L
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAASVGMYQ-GEPVLDL 177

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
             +   ED     D  V  T +G
Sbjct: 178 DYL---EDSAAETDLNVVMTSAG 197


>gi|257388919|ref|YP_003178692.1| translation initiation factor IF-2 subunit alpha [Halomicrobium
           mukohataei DSM 12286]
 gi|257171226|gb|ACV48985.1| translation initiation factor 2, alpha subunit [Halomicrobium
           mukohataei DSM 12286]
          Length = 277

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++  G++ ++ DFG FV      D  GL HIS++++  +    D V EG TV VK+
Sbjct: 7   PESGELAVGKIDEIEDFGVFVDLEEYEDKRGLCHISEVASGWIKNVRDHVNEGQTVVVKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGK 696
           L+ D D  +I LS+K V+ +  K
Sbjct: 67  LEIDEDAQQINLSIKDVNDHQRK 89


>gi|254512351|ref|ZP_05124418.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
 gi|221536062|gb|EEE39050.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
          Length = 237

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRDLNEMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R  A S ++ G      RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGI 166


>gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260]
 gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260]
          Length = 248

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +  + G  +   GS+    G TQ +   T+    +++    L G+ + 
Sbjct: 3   RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATV----EDKVPPFLRGSGKG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT +     S  G P+ R     RL  R++   +   A    T+ I  +
Sbjct: 59  WVSAEYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA            +P+   VA +++GL+        L 
Sbjct: 119 VIQADGGTRTASITGAFVALVDALRWIRDRNGLPSLPLRHQVAAVSVGLLGG----CPLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  +ED    +D  V   + G
Sbjct: 175 DLCYEEDSGAEVDCNVVMAEDG 196


>gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
 gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
          Length = 486

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++        + GS L   G+T+ I   ++    ++     + GT + 
Sbjct: 37  RPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASV----EDGVPGFMKGTGKG 92

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT    R  +   R  G      RL  R+I  V+        T+ I  +
Sbjct: 93  WISAEYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCD 152

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA            +P++  +A +++G+V    D  +  
Sbjct: 153 VIQADGGTRTASITGAFVALADALYKLYQAGDIKKMPLTSMLAAVSVGVV----DSQVCL 208

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           DI   ED    +D  +   + G    +Q   +    + + M   L+ A++G   ++    
Sbjct: 209 DICYQEDSNAEVDTNIIMNNKGQFIEIQCTGEERPFTRDEMDKILEYAEKGNRDLMRIQR 268

Query: 537 KVLSE 541
           +VL E
Sbjct: 269 RVLGE 273


>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
 gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
          Length = 241

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 29/242 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R + A++G +    GSS F  G T+ I  +  G R      D+ SG   
Sbjct: 10  LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQI-FGPR------DNRSGDNA 62

Query: 372 NDFMMHYNF-----LPCAT-GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
            +  + + +     +P A+   ++R G  S  E+   R    AI   L     FP++ + 
Sbjct: 63  AEIRVTFEYADFAKVPHASDTSMTRRGRES--EVIMKRTFEEAIKREL-----FPHSKIL 115

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I   + + DGS   A +  ++LAL+DAG+P+   V  + + L    DD   L     + +
Sbjct: 116 IAITVIQDDGSCQSAAINAATLALIDAGIPMFDFVVSMTVALY---DDKCFLDAGRAESN 172

Query: 485 -HLGHMDFKVAGTDSGITAMQMDMKI-GGISENIMVMALQQAKRGRLH-ILNEMSKVLSE 541
                ++  +  + S I +M +  +I    S+N+M  A+   K   LH I+ ++ +V S 
Sbjct: 173 ARFPVLEVSIFPSTSEILSMNLTARIEPQASKNLMAAAIDGCK--ELHAIMQDVVRVASM 230

Query: 542 SR 543
            R
Sbjct: 231 ER 232


>gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313]
          Length = 263

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R +      ++   GS L   GDT+ I   T+    D++       T  
Sbjct: 2   LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATV----DDKVPPFKKNTGE 57

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y+ LP AT      ++S++    R +EI   RL  RA+  V+         + I
Sbjct: 58  GWVTAEYSMLPRATAARNPRDISKLKLSGRSQEI--QRLIGRALRSVVNLNLLGEREIII 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G  +AL+DA            +P++  +A +++G+V    D +
Sbjct: 116 DCDVIQADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIV----DGV 171

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  T  G
Sbjct: 172 EMLDLCYMEDSNAATDMNVVMTSKG 196


>gi|329890647|ref|ZP_08268990.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568]
 gi|328845948|gb|EGF95512.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568]
          Length = 565

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E AR   R+ +    +  +I +G V  + D+GAFV   G  DGL+H++ +S
Sbjct: 173 IVVSRRAILEEARAEQRTELVGQLQEGEIREGVVKNITDYGAFVDLGGI-DGLLHVTDMS 231

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +RV+  S V+  GDTV V+++  + D  +I L MK
Sbjct: 232 WKRVSHPSQVLAVGDTVKVQIVKINPDTQRISLGMK 267



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN  Y G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD 
Sbjct: 283 VNAKYTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVIVLDV 342

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K    N
Sbjct: 343 DSAKRRISLGLKQAQNN 359


>gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16]
 gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 59  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G+D  IL
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGIL--GED--IL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 175 CDLEYTEDSAADTDMNVVMTEDG 197


>gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
 gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G+D  IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGIL--GED--IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYTEDSAADTDMNVVMTEDG 195


>gi|313897621|ref|ZP_07831163.1| S1 RNA binding domain protein [Clostridium sp. HGF2]
 gi|312957573|gb|EFR39199.1| S1 RNA binding domain protein [Clostridium sp. HGF2]
          Length = 117

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVD 691
           +GAFV+     +GL+HIS++S   V      VK  + V VK+LD D+ G   KLS+K V+
Sbjct: 19  YGAFVYLDSKHNGLIHISEISERFVRDVHTYVKVNERVKVKILDVDEDGMHFKLSLKAVE 78

Query: 692 QNTGKPI 698
            N  + +
Sbjct: 79  ANKARSM 85


>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
           infestans T30-4]
 gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
           infestans T30-4]
          Length = 777

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV-------- 363
           +R+DGR SE VR I  + GL  R  GSS + +G+T+ +V V  G RE             
Sbjct: 25  LRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTK-VVAVVYGPRELRTAAAGSVNSGA 83

Query: 364 --------DSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
                   ++ S TQ R      +     AT E     +  R+++    LA + I     
Sbjct: 84  AAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMS-LAVKQIFEACI 142

Query: 415 QTAQFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           QT  +P + + I  ++  +DG    A++   +LAL+DAG+ ++  V   + G ++     
Sbjct: 143 QTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYLQQ---- 198

Query: 474 IILSDISGDED 484
            +L D++  E+
Sbjct: 199 TMLCDLNYAEE 209


>gi|223985661|ref|ZP_03635709.1| hypothetical protein HOLDEFILI_03015 [Holdemania filiformis DSM
           12042]
 gi|223962352|gb|EEF66816.1| hypothetical protein HOLDEFILI_03015 [Holdemania filiformis DSM
           12042]
          Length = 718

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S++   R++  S+VV  GD   VWV  +D  +R 
Sbjct: 649 EGVVRNVVDFGAFVDIGLHEDGLVHVSKMVQGRISHPSEVVSIGDILKVWVYGIDA-ERH 707

Query: 682 KIKLSM 687
           +++L+M
Sbjct: 708 RVQLTM 713


>gi|294679008|ref|YP_003579623.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
 gi|294477828|gb|ADE87216.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
          Length = 237

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R IS + G+ +   GS L   GDT  +   T+    +++    L G+  
Sbjct: 1   MRPSGRNLADIRSISIETGVTKHAEGSVLIKMGDTHVLCTATI----EDKAPSFLKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + ++A     + +  
Sbjct: 57  GWVTAEYGMLPRATNSRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKP----VAGIAMGL 466
           ++ ++DG +  A++ G  +A       L+ +G+ +S P    VA I+ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKSGLIVSDPIIDHVAAISCGI 166


>gi|307297290|ref|ZP_07577096.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916550|gb|EFN46932.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 122

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  V  FGA+V+  G  +G +HIS+++ E V    D +K G  V  K+L  
Sbjct: 4   KVGTVVEGSVTSVKKFGAYVNLEGGEEGFIHISKVAREYVKNIEDYLKVGQKVEAKVLGT 63

Query: 678 DDRGKIKLSMK 688
              GK +LS+K
Sbjct: 64  TKDGKWELSIK 74


>gi|297538802|ref|YP_003674571.1| 30S ribosomal protein S1 [Methylotenera sp. 301]
 gi|297258149|gb|ADI29994.1| ribosomal protein S1 [Methylotenera sp. 301]
          Length = 503

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G+ V  K+L FD ++
Sbjct: 204 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLTVGEEVEAKILKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 263 NRVSLGIK 270



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS  +  + +    K+GD +   +L  D ++ +
Sbjct: 379 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWSQTGEEAIRNFKKGDELQAVILAIDVEKER 438

Query: 683 IKLSMK 688
           I L +K
Sbjct: 439 ISLGVK 444



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+GAFV      +GLVH+S++  T +      + + GD V V +L+ D+ R +
Sbjct: 292 GKVSNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNIHPGKIAQLGDEVEVMILEIDEARRR 351

Query: 683 IKLSMKVVDQN 693
           + L MK    N
Sbjct: 352 LSLGMKQCKAN 362


>gi|262381422|ref|ZP_06074560.1| RNA-binding protein [Bacteroides sp. 2_1_33B]
 gi|262296599|gb|EEY84529.1| RNA-binding protein [Bacteroides sp. 2_1_33B]
          Length = 708

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M+++I D+ E  ++  G V  + +FG FV      +GLVHIS+L+   V+  + VV    
Sbjct: 627 MVKTIEDLKE-GQVLPGIVTNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQ 685

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK+L  D  R +++LSMK
Sbjct: 686 HVKVKVLSVDLSRKRVQLSMK 706


>gi|239616650|ref|YP_002939972.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505481|gb|ACR78968.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 121

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  V  +GAFV   G  +G +HIS++S   V    D +K G  +  K+L  
Sbjct: 4   KVGNIVQGKVTAVRKYGAFVTLEGGEEGFIHISKVSKGYVKNIDDYLKVGQEITAKVLGT 63

Query: 678 DDRGKIKLSMKVVDQNTG 695
              GK +LS+K    N G
Sbjct: 64  TKDGKWELSIKDAGGNQG 81


>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
 gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
          Length = 249

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 93/193 (48%), Gaps = 13/193 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +     
Sbjct: 7   LLSEQGLRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKG---- 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYT- 422
              T+ ND +++  +         R   P   R+        ++A+   + ++  +P + 
Sbjct: 62  -KKTESNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAI-KSELYPRSQ 119

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + +  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K+    I L+DIS  
Sbjct: 120 IDVYVEVLQADGANYAVALNAATLALIDAGICLNELIVACTASLSKNN---IPLTDISHI 176

Query: 483 EDHLGHMDFKVAG 495
           E+  G     VA 
Sbjct: 177 EEVSGGPKLTVAA 189


>gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51]
 gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+   +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQ-GEAVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|53713095|ref|YP_099087.1| RNA-binding protein [Bacteroides fragilis YCH46]
 gi|52215960|dbj|BAD48553.1| putative RNA binding protein with S1 RNA-binding domain
           [Bacteroides fragilis YCH46]
          Length = 707

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E      G V  + +FGAFV      +GLVH+SQL+   +   ++VV     
Sbjct: 627 VRTINDLRE-GMTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D +R +I+L+MK
Sbjct: 686 VTVKVLSIDLERKRIQLTMK 705


>gi|312144298|ref|YP_003995744.1| Tex-like protein [Halanaerobium sp. 'sapolanicus']
 gi|311904949|gb|ADQ15390.1| Tex-like protein [Halanaerobium sp. 'sapolanicus']
          Length = 722

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  I D+ E   I+ G+V  ++DFGAF+     +DGL+HIS++S   +    ++++ 
Sbjct: 639 RKDILKIEDIEE-GMIFTGKVRNIVDFGAFIDIGLKQDGLLHISEMSDFYLNDPFEILQI 697

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V VK+L+ D  R +I  ++K
Sbjct: 698 GQNVDVKVLNVDKKRERISFTLK 720


>gi|256545379|ref|ZP_05472742.1| S1 RNA binding domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256398940|gb|EEU12554.1| S1 RNA binding domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 696

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I SI D+ E + I +G V  + +FG FV      DGLVHIS +S + +   +++V   D 
Sbjct: 613 ILSIDDLNEGD-ILEGTVRNITEFGCFVDIGVGIDGLVHISNMSDKFIKDPNEIVTNSDI 671

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           + VK+++ D  R +I LSMK
Sbjct: 672 IKVKVIEIDKKRERIGLSMK 691


>gi|224368955|ref|YP_002603119.1| transcriptional accessory protein (S1 RNA binding domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691672|gb|ACN14955.1| transcriptional accessory protein (S1 RNA binding domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 703

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVHISQL+   V   ++VVK    V V +L+ D +R +I
Sbjct: 637 GLVTNVTAFGAFVDIGVHQDGLVHISQLADRFVKDPNEVVKVRQQVTVTVLEVDINRQRI 696

Query: 684 KLSMK 688
            LSM+
Sbjct: 697 SLSMR 701


>gi|332981492|ref|YP_004462933.1| ribonuclease PH [Mahella australiensis 50-1 BON]
 gi|332699170|gb|AEE96111.1| ribonuclease PH [Mahella australiensis 50-1 BON]
          Length = 247

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 31/202 (15%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R  + +R ++     L+   GS L   G+T+ I    +    +++    L GT +     
Sbjct: 6   RGFDQLRPVTLTRDYLKHPDGSVLIEAGETKIICTAMI----EDKVPPFLKGTGKGWITS 61

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH--------GRLARRAIHPVLPQTAQFPYTLRIVSE 428
            Y  LP +T +  ++   +R   GH         R+  R +  V+  +A    T+ I  +
Sbjct: 62  EYGMLPGST-QARKIRESTR---GHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDCD 117

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL  A             PIS  VA +++G+V    D  I+ 
Sbjct: 118 VIQADGGTRTASITGSFVALAIAINKLFEKKKIERFPISNLVAAVSVGIV----DGQIML 173

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  DED    +D  +A TD G
Sbjct: 174 DLCYDEDARAQVDMNIAMTDDG 195


>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
 gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +S    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 5   RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 54

Query: 373 D----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           +      +   + P  TG++ ++      E     + +R +  +   T     T  I+ +
Sbjct: 55  ENPEKACIEVIWKP-KTGQIGKL------EKEFEMILKRTLQSICILTLNPNTTTSIIVQ 107

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           +   DG+  +  +  +  AL+DAG+P+      I   L + G  ++IL     +E  +  
Sbjct: 108 VVNDDGALLVCAINAACAALVDAGIPMKHLAVAICCCLAEGG--YVILDPTKLEEQKMRG 165

Query: 489 MDFKV 493
             + V
Sbjct: 166 FTYLV 170


>gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614]
 gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614]
          Length = 237

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G  R
Sbjct: 1   MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQNR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+  R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWVALRDC 140


>gi|239908954|ref|YP_002955696.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
 gi|239798821|dbj|BAH77810.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
          Length = 576

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D   V  + KG V  + DFG FV      +GLVH+S++S ++V   +++ KEGD +  
Sbjct: 460 VPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAEIYKEGDEIEA 519

Query: 673 KLLDFD-DRGKIKLSMKVV 690
           K++    D  ++ LS+K +
Sbjct: 520 KVIHVSADERRLGLSIKSI 538



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  + ++G FV   G  DGL+HI+ +S +R+    ++V  GD + +K+L FD D+ K+
Sbjct: 213 GRVKNITEYGVFVDLGGL-DGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKV 271

Query: 684 KLSMK 688
            L MK
Sbjct: 272 SLGMK 276



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  ++D+GAFV      +GLVHIS++S T ++   S +V  GD V V +L  D D+ +
Sbjct: 298 GKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKR 357

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 358 ISLGMKQVRPN 368



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I +G V  + +FG F+      DGL+H+S +S T++V    ++ K GD V  K+L  D +
Sbjct: 382 ILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKE 441

Query: 680 RGKIKLSMKVVDQN 693
             K  L +K + ++
Sbjct: 442 NEKFTLGIKQLSED 455


>gi|119356256|ref|YP_910900.1| 30S ribosomal protein S1 [Chlorobium phaeobacteroides DSM 266]
 gi|119353605|gb|ABL64476.1| SSU ribosomal protein S1P [Chlorobium phaeobacteroides DSM 266]
          Length = 591

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           ++KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 390 LHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELDVKVLKFD 447



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G++V + D+GAFV      +GLVHIS++S T+ +   S  V     V   +L+ D D  
Sbjct: 305 RGRIVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQEVECVILNIDKDHT 364

Query: 682 KIKLSMKVVDQN 693
           K+ LSMK V+++
Sbjct: 365 KLSLSMKRVNED 376



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 600 LAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           L E  AAR  EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+
Sbjct: 198 LEEAYAARREEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRI 252

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
              S+VV     + V ++ FD+  K + L MK
Sbjct: 253 NHPSEVVDLDQPIKVVVVGFDENTKRVSLGMK 284


>gi|61216057|sp|Q8DLA4|RNPH_THEEB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 242

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 28/247 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R    Q    Q   GS L   G TQ +  V+      E     L GT + 
Sbjct: 5   RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSF----KEGVPKFLEGTGQG 60

Query: 373 DFMMHYNFLPCAT-----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      E  ++   + +EI   RL  R++   +  +     TL + +
Sbjct: 61  WLTAEYRMLPSATRPRQEREFLKLSGRT-QEI--QRLIGRSLRSAVDLSLLGECTLIVDA 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++D  +    + G  +AL+DA       GV    P+   VA +++GL+ D + ++  
Sbjct: 118 DVLQADAGTRSLAITGGYIALVDALSALLQQGVLRKSPLRHQVAAVSVGLIDD-EPYL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S  ED    +DF V  T SG    +Q   ++G      +   L  A++G   ++   
Sbjct: 175 -DLSYAEDVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQ 233

Query: 536 SKVLSES 542
            +VL+ S
Sbjct: 234 QRVLAPS 240


>gi|220932348|ref|YP_002509256.1| CRISPR-associated RAMP protein, Cmr6 family [Halothermothrix orenii
           H 168]
 gi|219993658|gb|ACL70261.1| CRISPR-associated RAMP protein, Cmr6 family [Halothermothrix orenii
           H 168]
          Length = 376

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           I +G+V ++  +GAFV     +  DGL++IS ++ + V   ++ + EGD + VK+++ + 
Sbjct: 19  IVEGRVTRIKPYGAFVRLDEKKKIDGLIYISNIADKYVKDITNYINEGDQIRVKIINIEK 78

Query: 680 RGKIKLSMK 688
            GKI LS K
Sbjct: 79  DGKIALSFK 87


>gi|319779316|ref|YP_004130229.1| SSU ribosomal protein S1p [Taylorella equigenitalis MCE9]
 gi|317109340|gb|ADU92086.1| SSU ribosomal protein S1p [Taylorella equigenitalis MCE9]
          Length = 569

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  S+ E     E+ + + ++ E   + KG V  + ++GAFV   G  DGL+HI+ 
Sbjct: 175 NVVLSRRSVLESSMGEELQKLLENLQE-GSVVKGTVKNITEYGAFVDLGGI-DGLLHITD 232

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++  RV   S+V+  G  V  K+L FD D+ ++ L +K
Sbjct: 233 MAWRRVRHPSEVLTVGQEVEAKVLKFDKDKNRVSLGIK 270



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           T  P+ +K+  G+V  + ++GAFV      +GLVH+S++  T +      VV +G  + V
Sbjct: 282 TRYPKDSKLT-GKVTNITEYGAFVEVETGIEGLVHVSEMDWTNKNVDPRKVVSQGQEIEV 340

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +L+ D DR +I L MK V  N
Sbjct: 341 CVLEIDEDRRRISLGMKQVQPN 362


>gi|291276334|ref|YP_003516106.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
 gi|290963528|emb|CBG39359.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
          Length = 529

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 11/118 (9%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVP--EVNKIYK------GQVVKVMDFGAF 636
           +NI  +  V+I   +L E    R  ++ +T+ P  E  K YK      G+V  + DFGAF
Sbjct: 308 LNIGQELDVEIIEINLEE-RRLRVSLKKLTERPFAEFAKKYKEGDVVEGRVETLTDFGAF 366

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693
           ++  GA DGL+H      ++  K  D  K+GD + VK++  D +  +I LSM+V++++
Sbjct: 367 INL-GAIDGLLHNEDAFWDKDKKCKDHFKQGDILKVKIIKIDTKNERISLSMRVLEES 423



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R    S   + E+     G V ++  FG FV   G  +GLVH ++++       +   KE
Sbjct: 165 RNHSESAKKIMEIQSPLDGVVKRITSFGMFVSVDGV-EGLVHYTEITHRGPVNPAKFYKE 223

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           GD V VK + +D+  K +  S+K + ++  K I+
Sbjct: 224 GDNVQVKAIAYDEEKKRLSYSIKALQEDPWKEII 257


>gi|253566765|ref|ZP_04844217.1| RNA-binding protein [Bacteroides sp. 3_2_5]
 gi|265763188|ref|ZP_06091756.1| RNA-binding protein [Bacteroides sp. 2_1_16]
 gi|251944328|gb|EES84817.1| RNA-binding protein [Bacteroides sp. 3_2_5]
 gi|263255796|gb|EEZ27142.1| RNA-binding protein [Bacteroides sp. 2_1_16]
 gi|301162818|emb|CBW22365.1| putative RNA-binding protein [Bacteroides fragilis 638R]
          Length = 707

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E      G V  + +FGAFV      +GLVH+SQL+   +   ++VV     
Sbjct: 627 VRTINDLRE-GMTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D +R +I+L+MK
Sbjct: 686 VTVKVLSIDLERKRIQLTMK 705


>gi|237716143|ref|ZP_04546624.1| RNA-binding protein [Bacteroides sp. D1]
 gi|262407755|ref|ZP_06084303.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647232|ref|ZP_06724830.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809620|ref|ZP_06768312.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443790|gb|EEO49581.1| RNA-binding protein [Bacteroides sp. D1]
 gi|262354563|gb|EEZ03655.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637412|gb|EFF55832.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443163|gb|EFG11938.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 710

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL    ++  ++VV     
Sbjct: 627 VRTIADLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLVERFISDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDYDRKRIQLSMIGVPQD 710


>gi|149247299|ref|XP_001528062.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146448016|gb|EDK42404.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1863

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  +N  + G V + +   +E+    +++++  D+  V ++++G V KV DFG FV   G
Sbjct: 1350 GKIINCKEQGKV-LMTLKESEVNGDLKILKNYDDLV-VGEVFEGTVTKVTDFGVFVKLDG 1407

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +  GL H S++S   V+  + +  EGD V VK+L   D GK +LS+
Sbjct: 1408 TINISGLCHHSEISENDVSNIASLFGEGDRVKVKILKV-DLGKKQLSL 1454


>gi|56694936|ref|YP_165281.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
 gi|81350765|sp|Q5LWF6|RNPH_SILPO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56676673|gb|AAV93339.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
          Length = 237

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R  A S ++ G      RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 DVIQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGI 166


>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
 gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
          Length = 211

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 23/185 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +GDT+ +  V  G +          GT++N
Sbjct: 5   RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAV-YGPK---------PGTKKN 54

Query: 373 D----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           +      +   + P  TG++ ++      E  +  + +R +  +   T     T  ++ +
Sbjct: 55  ENPEKACIEVIWKP-KTGQIGKV------EKEYEMILKRTLQTICVLTINPNTTTSVIVQ 107

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           +   DG+     +  +  AL+DAG+P+      I   L + G  ++IL     +E  +  
Sbjct: 108 VVHDDGALLTCAINAACAALVDAGIPMKHLAVAICCCLSESG--YVILDPTKLEEQKMKG 165

Query: 489 MDFKV 493
             + V
Sbjct: 166 FTYLV 170


>gi|169628639|ref|YP_001702288.1| RNA-binding protein [Mycobacterium abscessus ATCC 19977]
 gi|169240606|emb|CAM61634.1| Putative RNA binding protein, contains S1 domain [Mycobacterium
           abscessus]
          Length = 787

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK G  V VK+ + D  R
Sbjct: 657 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGQVVRVKVTEVDIPR 716

Query: 681 GKIKLSMKVVD 691
            +I L++++ D
Sbjct: 717 QRIGLTLRLND 727


>gi|60681362|ref|YP_211506.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
 gi|60492796|emb|CAH07570.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
          Length = 707

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E      G V  + +FGAFV      +GLVH+SQL+   +   ++VV     
Sbjct: 627 VRTINDLRE-GMTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D +R +I+L+MK
Sbjct: 686 VTVKVLSIDLERKRIQLTMK 705


>gi|299066876|emb|CBJ38071.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum CMR15]
          Length = 562

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 278 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 336

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 337 DIDEDKRRISLGMKQCKAN 355



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 197 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 255

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 256 NRVSLGVK 263



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D ++ +
Sbjct: 372 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVEKER 431

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 432 ISLGIK---QLSGDPF 444


>gi|147921588|ref|YP_684595.1| translation initiation factor IF-2 subunit alpha [uncultured
           methanogenic archaeon RC-I]
 gi|56295565|emb|CAH04807.1| translation initiation factor 2, subunit alpha [uncultured
           archaeon]
 gi|110619991|emb|CAJ35269.1| translation initiation factor 2, alpha subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 267

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 627 VVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           V KV+DFGAFV       ++GL+HIS++++  V    D V+EG  +  K+LD +  RG I
Sbjct: 16  VTKVVDFGAFVALDEYDNKEGLIHISEVASGWVKYIRDHVREGQKIVCKVLDVNPKRGHI 75

Query: 684 KLSMKVVDQN 693
            LS K V+++
Sbjct: 76  DLSFKDVNEH 85


>gi|88705966|ref|ZP_01103674.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
 gi|88699680|gb|EAQ96791.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
          Length = 557

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + VK+L FD +R +
Sbjct: 196 KGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVEVGQELDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +++   +V  + D+G F       +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 275 PEGSRVM-AKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   QN
Sbjct: 334 DIDEERRRISLGIKQCQQN 352


>gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
 gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G+D  IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGIL--GED--IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYTEDSAADTDMNVVMTEDG 195


>gi|193213834|ref|YP_001995033.1| 30S ribosomal protein S1 [Chloroherpeton thalassium ATCC 35110]
 gi|193087311|gb|ACF12586.1| ribosomal protein S1 [Chloroherpeton thalassium ATCC 35110]
          Length = 616

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+  +KG V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L F
Sbjct: 391 VDSEHKGIVRNITDFGVFVELESGVDGLVHISDLSWTKKIRHPSEIVKKNQELDVKVLKF 450

Query: 678 DDRGK 682
           D + +
Sbjct: 451 DVKAR 455



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 602 EIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           E EA R EM+ +I    +V  + +G V  + DFG FV   G  DGLVHI+ ++  R++  
Sbjct: 205 EYEARRKEMLANI----KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRISHP 259

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S+ V   D + V ++ +D D+ ++ L MK
Sbjct: 260 SEAVNLDDPIKVVVIGYDADKQRVSLGMK 288



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S T+ +   +  V  G  V   +L+ D +  K
Sbjct: 310 GKVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPNQFVTMGQEVECVILNIDKEHTK 369

Query: 683 IKLSMKVVDQN 693
           + LSMK  +++
Sbjct: 370 LSLSMKQTEED 380


>gi|283853642|ref|ZP_06370876.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
 gi|283570975|gb|EFC19001.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
          Length = 576

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++  G+V  ++D+GAFV      +GLVHIS++S T ++   S +V  GD V V +L
Sbjct: 291 PEDTRL-SGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVL 349

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D D+ +I L MK V  N
Sbjct: 350 SVDPDKKRISLGMKQVRPN 368



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D   V  + KG V  + DFG FV      +GLVH+S++S ++V   +++ KEGD +  
Sbjct: 460 VPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAELYKEGDEIEA 519

Query: 673 KLLDFD-DRGKIKLSMKVV 690
           K++    D  ++ LS+K +
Sbjct: 520 KVIHVSADERRLGLSIKSI 538



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M + +    E  +   G+V  + ++G FV   G  DGL+HI+ +S +R+    ++V  GD
Sbjct: 197 MRKDLLKTLEEGQTVTGRVKNITEYGVFVDLGGL-DGLMHITDMSWKRIKHPKELVHLGD 255

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            + +K+L FD D+ K+ L MK
Sbjct: 256 ELELKVLSFDQDKQKVSLGMK 276



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + +G V  + +FG F+      DGL+H+S +S T++V    ++ K GDTV  K+L  D +
Sbjct: 382 VLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 680 RGKIKLSMKVVDQN 693
             K  L +K + ++
Sbjct: 442 NEKFTLGIKQLSED 455


>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
 gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|114797230|ref|YP_761081.1| S1 RNA-binding domain-containing protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737404|gb|ABI75529.1| S1 RNA binding domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 771

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I  +TD+    ++ +G V  V  FGAFV     +DGLVHIS++S   +    D VK 
Sbjct: 648 QEGIDKVTDLKPGMRL-EGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPHDAVKT 706

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V V +++ D  R +I LSMK
Sbjct: 707 GQVVSVTVMEVDVARKRIGLSMK 729


>gi|262193889|ref|YP_003265098.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
 gi|262077236|gb|ACY13205.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
          Length = 250

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 30/204 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR++  +R +    G  Q   GS+L   G+T  +   ++    +E+    L+G    
Sbjct: 3   RPDGREANQLRPVEITTGFQQYAEGSALIKSGNTWVLCAASI----EERVPPFLAGRGTG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   +R G   R   G G    RL  R++   +   A     + I  +
Sbjct: 59  WVTAEYAMLPRSTH--TRSG---RHSGGRGKEIQRLIGRSLRAAVNMEALGERAITIDCD 113

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGVPIS------KPVAGIAMGLVKDGDDFII 475
           + ++DG + +A++ G  +A       L+ AG+  S      +P+A I++G++ DG+  + 
Sbjct: 114 VLQADGGTRVASITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGII-DGEARL- 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED    +D  V  T+SG
Sbjct: 172 --DLPYAEDSTAEVDMNVVMTESG 193


>gi|218295918|ref|ZP_03496698.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
 gi|218243656|gb|EED10184.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
          Length = 530

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           +G+VV +  FGAFV      +GL+HIS+LS T+R    S+VVKEGD V   +L  D
Sbjct: 298 RGKVVGLTHFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKEGDEVEAVVLRLD 353



 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + KG++  V DFG FV      +GLVH+S+L   RV   + + K+GD + V +L+ D
Sbjct: 383 VVKGKITGVTDFGVFVELEPGMEGLVHVSELDHIRVENPAALFKKGDEMEVVVLNID 439



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G VV V DFGAFV+  G  DGLVH S+++  R     +V+ +G  V  +++  
Sbjct: 207 EPGQVVEGTVVDVTDFGAFVNL-GPVDGLVHRSEITWGRFNHPREVLHKGQKVRAQVVSV 265

Query: 678 D-DRGKIKLSMKVV 690
           D ++ ++ LS+K +
Sbjct: 266 DPEKERVNLSIKAL 279


>gi|304319916|ref|YP_003853559.1| 30S ribosomal protein S1 [Parvularcula bermudensis HTCC2503]
 gi|303298819|gb|ADM08418.1| ribosomal protein S1 [Parvularcula bermudensis HTCC2503]
          Length = 568

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  S+ E + A      + D+ E ++   G V  + D+GAFV      DGL+H++
Sbjct: 172 GNIVVSRRSVLEEDRAEHRQEVVRDLNEGDE-RDGVVKNITDYGAFVELAPGVDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S  RV   S+V+   DTV VK++  + +  +I L MK
Sbjct: 231 DMSWSRVNHPSEVLNVNDTVSVKIIKINPETSRISLGMK 269



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLL 675
           +  I +G+V  + +FG F+      DG+VH+S L  +R  +  D +++   GD V  K+L
Sbjct: 372 IGSIVEGEVKNITEFGLFIGIDDDMDGMVHLSDLDWDR--QGDDAIRDYQKGDMVKAKVL 429

Query: 676 DFD-DRGKIKLSMKVV 690
           D D D+ +I L +K V
Sbjct: 430 DVDPDKERISLGIKQV 445



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S  ++    S +V  G  V V +L+ D+ +
Sbjct: 289 FHGKVTNITDYGAFVELEDGIEGLVHVSEMSWVKKNVPPSSIVSSGQEVDVMVLEVDEQK 348

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 349 RRVSLGLK 356


>gi|307268764|ref|ZP_07550132.1| ribonuclease PH [Enterococcus faecalis TX4248]
 gi|306514892|gb|EFM83439.1| ribonuclease PH [Enterococcus faecalis TX4248]
          Length = 451

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|302832632|ref|XP_002947880.1| hypothetical protein VOLCADRAFT_120525 [Volvox carteri f.
           nagariensis]
 gi|300266682|gb|EFJ50868.1| hypothetical protein VOLCADRAFT_120525 [Volvox carteri f.
           nagariensis]
          Length = 979

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           Y+G V  V +FGAFV    + +GL+HIS+L+        DVV  G  V VK+L+ D
Sbjct: 68  YEGTVTAVENFGAFVDIGTSTNGLIHISKLAAGFTKNAKDVVSRGQKVTVKVLNVD 123


>gi|299145320|ref|ZP_07038388.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_23]
 gi|298515811|gb|EFI39692.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_23]
          Length = 710

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ +   I  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     
Sbjct: 627 VRTIADLRK-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPTEVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDYDRKRIQLSMIGVQQD 710


>gi|256618706|ref|ZP_05475552.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|257089534|ref|ZP_05583895.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|256598233|gb|EEU17409.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|256998346|gb|EEU84866.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|315577483|gb|EFU89674.1| ribonuclease PH [Enterococcus faecalis TX0630]
          Length = 451

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|169837286|ref|ZP_02870474.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7
           single-cell isolate TM7a]
          Length = 49

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           +TQA+VV TLG++EDEQ +D +    R  F +HYNF
Sbjct: 4   ETQALVVATLGSKEDEQIIDGMEDETRKKFFLHYNF 39


>gi|56461525|ref|YP_156806.1| RNase PH [Idiomarina loihiensis L2TR]
 gi|61215805|sp|Q5QYL5|RNPH_IDILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56180535|gb|AAV83257.1| RNase PH [Idiomarina loihiensis L2TR]
          Length = 237

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQ 370
           +R  GR ++ +R ++      +   GS L   G+T+ +   ++     E+ V   L G  
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASV-----ERGVPRFLKGKG 55

Query: 371 RNDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +      Y+ LP AT      E SR G    R +   RL  R++   +  +A   +T+ I
Sbjct: 56  QGWVTAEYSMLPRATHTRSAREASR-GKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+DA       G+    P+ + VA I++G++ DG+   
Sbjct: 115 DCDVIQADGGTRTASITGACVALVDALNWMRAQGMVKVNPLKEMVAAISVGIL-DGEP-- 171

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            +SD+   ED     D  +  T++G
Sbjct: 172 -VSDLEYIEDSKADTDMNIVMTEAG 195


>gi|150399202|ref|YP_001322969.1| RNA-binding S1 domain-containing protein [Methanococcus vannielii
           SB]
 gi|150011905|gb|ABR54357.1| RNA binding S1 domain protein [Methanococcus vannielii SB]
          Length = 722

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG +  ++DFGAFV      DGL+HIS++S   +    +V+  GD V V +L  D ++
Sbjct: 650 ILKGTIRNIVDFGAFVDIGVHHDGLIHISEVSDRFIKHPLEVISVGDVVNVFVLGIDFEK 709

Query: 681 GKIKLSMK 688
            ++ LS+K
Sbjct: 710 NRVSLSIK 717


>gi|154248867|ref|YP_001409692.1| RNA-binding S1 domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152803|gb|ABS60035.1| RNA binding S1 domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 119

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ KG+V +V+ FGA +       G +HIS++S + V K  D +K G  +  K++  
Sbjct: 2   EVGQVVKGKVTEVLKFGANIELENGEKGFIHISKISNQYVQKVEDFLKVGQDIEAKVIGK 61

Query: 678 DDRGKIKLSMK 688
              GK +LS+K
Sbjct: 62  GRDGKWELSLK 72


>gi|293569789|ref|ZP_06680876.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
 gi|291587537|gb|EFF19414.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
          Length = 451

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAKYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
 gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEN----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|207743935|ref|YP_002260327.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum IPO1609]
 gi|300704750|ref|YP_003746353.1| 30S ribosomal protein S1 [Ralstonia solanacearum CFBP2957]
 gi|206595337|emb|CAQ62264.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum IPO1609]
 gi|299072414|emb|CBJ43759.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum CFBP2957]
          Length = 562

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 278 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 336

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 337 DIDEDKRRISLGMKQCKAN 355



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 197 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 255

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 256 NRVSLGVK 263



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 372 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKER 431

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 432 ISLGIK---QLSGDPF 444


>gi|153006268|ref|YP_001380593.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
 gi|166228263|sp|A7HFW3|RNPH_ANADF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152029841|gb|ABS27609.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR    +R++  + G+ +   GS L   GDT  +   ++    DE+    + GT  
Sbjct: 1   MRTNGRGPRDLRNVVLEPGVSKHAEGSCLARFGDTHVLCTASV----DEKVPPHVYGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T E  RM   + R    G      RL  RA+   +   A    T+ +
Sbjct: 57  GWVTAEYGMLPRSTHE--RMAREAARGKQGGRTLEIQRLIGRALRAAVDLRALGTRTVTL 114

Query: 426 VSEITESDGSSSMATVCGS--SLALMDAGV---------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G   +LAL   G+         P+++ VA +++GLV +G+   
Sbjct: 115 DCDVIQADGGTRTAAITGGYVALALALRGLQQRKTLSRNPLARSVAAVSVGLV-EGE--- 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
           +  D+   ED    +D  V  T  G
Sbjct: 171 VCVDLDYGEDSTAEVDMNVVATGDG 195


>gi|39996894|ref|NP_952845.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|61215993|sp|Q74C79|RNPH_GEOSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39983782|gb|AAR35172.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|307634928|gb|ADI84630.2| ribonuclease PH [Geobacter sulfurreducens KN400]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+  ++R+I      L+   GS L   GDT+ +   ++    +E     L G   
Sbjct: 1   MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASV----EESVPPFLRGKGG 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S   A   +  G      RL  R++  V   T     ++ I  
Sbjct: 57  GWVTAEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D           A +P+ + VA +++G+V  G+   +L
Sbjct: 117 DVLQADGGTRTASITGAYVALVDAFQWLVSQGTIATLPVREAVAAVSVGIV-GGE---VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D     T SG
Sbjct: 173 LDLNYIEDSRADVDMNFVMTSSG 195


>gi|83749856|ref|ZP_00946824.1| SSU ribosomal protein S1P [Ralstonia solanacearum UW551]
 gi|83723469|gb|EAP70679.1| SSU ribosomal protein S1P [Ralstonia solanacearum UW551]
          Length = 566

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 282 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 340

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 341 DIDEDKRRISLGMKQCKAN 359



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 201 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 259

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 260 NRVSLGVK 267



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 376 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKER 435

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 436 ISLGIK---QLSGDPF 448


>gi|326799943|ref|YP_004317762.1| Tex-like protein [Sphingobacterium sp. 21]
 gi|326550707|gb|ADZ79092.1| Tex-like protein [Sphingobacterium sp. 21]
          Length = 746

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVH+SQ++   +   ++VVK    V V +++ D +R +I
Sbjct: 642 GIVTNITNFGAFVDIGVHQDGLVHLSQMANRFIKDPNEVVKVHQQVEVTVIEVDANRNRI 701

Query: 684 KLSMKV 689
            LSMK 
Sbjct: 702 SLSMKT 707


>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
 gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
          Length = 256

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR +  +R +    G      GS L   G+T+ +   ++         DS  G   
Sbjct: 17  TRADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGW-- 74

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E     S  G    R     RL  RA+   +        T+ I  
Sbjct: 75  --LTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDC 132

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D +  
Sbjct: 133 DVLQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGII----DGVPC 188

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D+  +ED    +D  VA     +TA    ++I G  EN
Sbjct: 189 LDLPYEEDSRADVDMNVA-----MTAEGRFVEIQGTGEN 222


>gi|227548661|ref|ZP_03978710.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079275|gb|EEI17238.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
          Length = 246

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 26/211 (12%)

Query: 307 MLDKKV---RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           M D K    R+DGR  + +R +    G      GS L   G T+ +   ++         
Sbjct: 1   MTDPKTEFTRLDGRAFDEMRPVRITRGFTTNPAGSVLVEFGATRVMCTASVEVGVPRFKK 60

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           DS  G         Y  LP AT E     S  G    R     RL  R++   +      
Sbjct: 61  DSGEGW----LTAEYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLAQLG 116

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVK 468
             T+++  ++ ++DG +  A++ G+ +AL DA           G P+  PVA ++ GLV 
Sbjct: 117 ENTIQLDCDVLQADGGTRTASITGAYVALADAIAFLSERGLVPGEPLLAPVAAVSAGLV- 175

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
             D  + L D+  +ED    +D  V   DSG
Sbjct: 176 --DGHVAL-DLPYEEDSRAEVDLNVVMNDSG 203


>gi|187927875|ref|YP_001898362.1| 30S ribosomal protein S1 [Ralstonia pickettii 12J]
 gi|187724765|gb|ACD25930.1| ribosomal protein S1 [Ralstonia pickettii 12J]
          Length = 562

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 278 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 336

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 337 DIDEDKRRISLGMKQCKAN 355



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 197 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 255

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 256 NRVSLGVK 263



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 372 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKER 431

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 432 ISLGIK---QLSGDPF 444


>gi|17545628|ref|NP_519030.1| 30S ribosomal protein S1 [Ralstonia solanacearum GMI1000]
 gi|17427921|emb|CAD14611.1| probable 30s ribosomal subunit protein s1 [Ralstonia solanacearum
           GMI1000]
          Length = 562

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 278 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 336

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 337 DIDEDKRRISLGMKQCKAN 355



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 197 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 255

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 256 NRVSLGVK 263



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D ++ +
Sbjct: 372 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVEKER 431

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 432 ISLGIK---QLSGDPF 444


>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
 gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
 gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
 gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
          Length = 257

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 20  MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 76  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 135

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 136 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 192 CDLEYVEDSAADTDMNVVMTEEG 214


>gi|308179664|ref|YP_003923792.1| transcription accessory protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045155|gb|ADN97698.1| transcription accessory protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 723

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVH+S+L+ + +      V  GD  TVWV+ +D + R 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHVSKLTDKFLKDPRQAVAVGDIVTVWVEEVD-EQRQ 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|89890788|ref|ZP_01202297.1| 30S ribosomal protein [Flavobacteria bacterium BBFL7]
 gi|89516933|gb|EAS19591.1| 30S ribosomal protein [Flavobacteria bacterium BBFL7]
          Length = 619

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 214 VVVSHKALIEADIEEQKKEIISRLEKGQVLEGVVKNITSYGVFVDLGGV-DGLVHITDLS 272

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   ++VV+   T+ V +LDFD D+ +I+L +K
Sbjct: 273 WSRINHPNEVVELDQTLNVVILDFDEDKSRIQLGLK 308



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL--DFDDR 680
           KG+VV + D+GAFV      +GL+H+S++S +  +    D VK GDTV  ++L  D +DR
Sbjct: 329 KGKVVVIADYGAFVEIEEGVEGLIHVSEMSWSTHLRSAGDFVKVGDTVDAQVLTIDREDR 388

Query: 681 GKIKLSMK 688
            K+ L MK
Sbjct: 389 -KMSLGMK 395


>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|21759419|sp|Q9KVD6|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3894-4]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|317484723|ref|ZP_07943624.1| tex-like domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924079|gb|EFV45264.1| tex-like domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 712

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FGAFV     +DGLVHISQL+   V   ++VVK    V V +LD D  R +I
Sbjct: 646 GIVTNITAFGAFVDIGVHQDGLVHISQLANRFVRDPNEVVKVHQEVLVTVLDVDIPRKRI 705

Query: 684 KLSMK 688
            L+M+
Sbjct: 706 SLTMR 710


>gi|312131252|ref|YP_003998592.1| ssu ribosomal protein s1p [Leadbetterella byssophila DSM 17132]
 gi|311907798|gb|ADQ18239.1| SSU ribosomal protein S1P [Leadbetterella byssophila DSM 17132]
          Length = 604

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 8/108 (7%)

Query: 584 KVNIDDDGTVKIASSSLAE--IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           K+N  +D  V ++   L E  +E+ R+ I  +T++ E  ++ +G V  + +FG F+   G
Sbjct: 179 KINHTNDNVV-VSHKVLIEKDLESQRQQI--LTNL-EKGQVLEGVVKNITNFGVFIDLGG 234

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
             DGL+HI+ +S  RV   ++V+   D + V +LDFDD  K I L MK
Sbjct: 235 V-DGLLHITDISWGRVNHPNEVLNLDDKIKVVVLDFDDEKKRISLGMK 281



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + +FG F+      DGLVH+S LS T+++   SD VK GDT+ V +L+ D + 
Sbjct: 390 HTGTVRNLTNFGLFLELEEGIDGLVHVSDLSWTKKIKHPSDFVKIGDTLEVVVLELDVEN 449

Query: 681 GKIKLSMKVVDQN 693
            ++ LS K +++N
Sbjct: 450 RRLALSHKHIEEN 462



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           EV     G++V + D+GAF+      +GL+H+S++S ++ +   SD ++ GD +   +L 
Sbjct: 296 EVGSKVSGKIVNIADYGAFLELKPGVEGLIHVSEMSWSQHLRNPSDFLQIGDEISAVVLT 355

Query: 677 FD-DRGKIKLSMK 688
            D +  K+ L +K
Sbjct: 356 LDKEERKMSLGIK 368


>gi|300714644|ref|YP_003739447.1| ribonuclease PH [Erwinia billingiae Eb661]
 gi|299060480|emb|CAX57587.1| Ribonuclease PH [Erwinia billingiae Eb661]
          Length = 238

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   L   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA I++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVSIGKLKTNPMKGMVAAISVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|254515153|ref|ZP_05127214.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
 gi|219677396|gb|EED33761.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
          Length = 557

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + VK+L FD +R +
Sbjct: 196 KGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPSEIVEVGQELDVKVLKFDRERNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +++   +V  + D+G F       +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 275 PEGSRVM-AKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K   QN
Sbjct: 334 DIDEERRRISLGIKQCQQN 352


>gi|86137652|ref|ZP_01056229.1| S1 RNA binding domain protein [Roseobacter sp. MED193]
 gi|85825987|gb|EAQ46185.1| S1 RNA binding domain protein [Roseobacter sp. MED193]
          Length = 785

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G  V V + + D  R
Sbjct: 651 VLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEVVKTGQVVKVTVTEVDVAR 710

Query: 681 GKIKLSMK 688
            +I L+M+
Sbjct: 711 KRIALTMR 718


>gi|283768206|ref|ZP_06341119.1| S1 RNA binding domain protein [Bulleidia extructa W1219]
 gi|283105083|gb|EFC06454.1| S1 RNA binding domain protein [Bulleidia extructa W1219]
          Length = 749

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRGK 682
           G V  V+DFGAF+      DGL HIS ++ ++    S+++  GD  TVWV  +D  +R +
Sbjct: 642 GTVRNVVDFGAFIDIGLHEDGLAHISHMAMKKFNHPSEILSVGDIVTVWVYEIDI-NRNR 700

Query: 683 IKLSM 687
           ++LS+
Sbjct: 701 VQLSL 705


>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+++ +R+++     +    GS+L   G+T+ +V  +L T    ++   L G  R
Sbjct: 1   MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASL-TAGVPRW---LKGQGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R     RL  R++  V+        TL +  
Sbjct: 57  GWVTAEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL DA       G+      PI   +A I++G++ DG+  +
Sbjct: 117 DVLQADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGII-DGEPVL 175

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            L  +   ED     D  V  T SG
Sbjct: 176 DLPYV---EDSRADTDMNVVMTGSG 197


>gi|332711689|ref|ZP_08431620.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
 gi|332349667|gb|EGJ29276.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
          Length = 285

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 605 AAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + RE +R+ T    EV ++ +G+V  +  FG FV F    +GL+HI Q+S   V   S V
Sbjct: 167 SQREAVRAATFSELEVGQLVEGKVAAIKPFGVFVDF-NQTNGLLHIKQVSQSFVEDLSKV 225

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            + G  + V +++ D+ +G+I +S +V++   G+
Sbjct: 226 FEIGQVIQVMIINLDEGKGRISMSTRVLENYPGE 259


>gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
 gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
          Length = 243

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL--GTREDEQYVDSLSGTQ 370
           R DGR    +R IS Q    +   GS L   GDTQ +  V++  G  +  Q+      T 
Sbjct: 5   RPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPGVPKFLQF------TG 58

Query: 371 RNDFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           +      Y  LP AT +     +   S R     RL  R++   L        T+ + ++
Sbjct: 59  QGWLTAEYRMLPGATPQRQERELMKLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDAD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +   ++ G  +AL DA             PI   VA +++GL+ +G+ F+   
Sbjct: 119 VLQADAGTRTTSITGGFVALADALDKLVKNGELEQSPIVSQVAAVSVGLL-EGEPFL--- 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +DF V   ++  I  MQ   + G  S   +   L  A++G   +L    
Sbjct: 175 DLNYPEDVAAEVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQR 234

Query: 537 KVLSES 542
           + L  S
Sbjct: 235 QALRTS 240


>gi|241662463|ref|YP_002980823.1| 30S ribosomal protein S1 [Ralstonia pickettii 12D]
 gi|309781045|ref|ZP_07675783.1| ribosomal protein S1 [Ralstonia sp. 5_7_47FAA]
 gi|240864490|gb|ACS62151.1| ribosomal protein S1 [Ralstonia pickettii 12D]
 gi|308920111|gb|EFP65770.1| ribosomal protein S1 [Ralstonia sp. 5_7_47FAA]
          Length = 562

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 278 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 336

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 337 DIDEDKRRISLGMKQCKAN 355



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 197 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 255

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 256 NRVSLGVK 263



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 372 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKER 431

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 432 ISLGIK---QLSGDPF 444


>gi|229546199|ref|ZP_04434924.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|229550384|ref|ZP_04439109.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255973155|ref|ZP_05423741.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255976198|ref|ZP_05426784.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256762130|ref|ZP_05502710.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256852772|ref|ZP_05558142.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256958619|ref|ZP_05562790.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256965477|ref|ZP_05569648.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|257078027|ref|ZP_05572388.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|257082915|ref|ZP_05577276.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|257086477|ref|ZP_05580838.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257415736|ref|ZP_05592730.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis AR01/DG]
 gi|257422961|ref|ZP_05599951.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294780993|ref|ZP_06746345.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300860046|ref|ZP_07106134.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|307273813|ref|ZP_07555035.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|307274576|ref|ZP_07555756.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|307278842|ref|ZP_07559905.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|307288573|ref|ZP_07568557.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|307291105|ref|ZP_07570990.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|312951374|ref|ZP_07770272.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|229304506|gb|EEN70502.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229308723|gb|EEN74710.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|255964173|gb|EET96649.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255969070|gb|EET99692.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256683381|gb|EEU23076.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256711231|gb|EEU26269.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256949115|gb|EEU65747.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256955973|gb|EEU72605.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|256986057|gb|EEU73359.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|256990945|gb|EEU78247.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|256994507|gb|EEU81809.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257157564|gb|EEU87524.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ARO1/DG]
 gi|257164785|gb|EEU94745.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294451939|gb|EFG20389.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300850864|gb|EFK78613.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|306497759|gb|EFM67291.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|306500480|gb|EFM69813.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|306504513|gb|EFM73720.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|306508728|gb|EFM77818.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|306509498|gb|EFM78546.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|310630634|gb|EFQ13917.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|315028079|gb|EFT40011.1| ribonuclease PH [Enterococcus faecalis TX2137]
 gi|315030712|gb|EFT42644.1| ribonuclease PH [Enterococcus faecalis TX4000]
 gi|315031600|gb|EFT43532.1| ribonuclease PH [Enterococcus faecalis TX0017]
 gi|315034958|gb|EFT46890.1| ribonuclease PH [Enterococcus faecalis TX0027]
 gi|315148459|gb|EFT92475.1| ribonuclease PH [Enterococcus faecalis TX4244]
 gi|315156537|gb|EFU00554.1| ribonuclease PH [Enterococcus faecalis TX0043]
 gi|315158363|gb|EFU02380.1| ribonuclease PH [Enterococcus faecalis TX0312]
 gi|315165533|gb|EFU09550.1| ribonuclease PH [Enterococcus faecalis TX1302]
 gi|315168390|gb|EFU12407.1| ribonuclease PH [Enterococcus faecalis TX1341]
 gi|323480361|gb|ADX79800.1| ribonuclease PH [Enterococcus faecalis 62]
 gi|329576387|gb|EGG57900.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1467]
          Length = 451

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|222147322|ref|YP_002548279.1| ribonuclease PH [Agrobacterium vitis S4]
 gi|254808101|sp|B9JZG3|RNPH_AGRVS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221734312|gb|ACM35275.1| ribonuclease PH [Agrobacterium vitis S4]
          Length = 239

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS +    +   GS L   GDT  +   +L    +++    L  T +
Sbjct: 1   MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASL----EDRTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWIALHDC 140


>gi|72119667|gb|AAZ61930.1| SSU ribosomal protein S1P [Ralstonia eutropha JMP134]
          Length = 592

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 308 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 366

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 367 DIDEDKRRISLGMKQCKAN 385



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 227 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 285

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 286 NRVSLGVK 293



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 402 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLGIDVDKER 461

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 462 ISLGIK---QLSGDPF 474


>gi|28377451|ref|NP_784343.1| transcription accessory protein [Lactobacillus plantarum WCFS1]
 gi|300768796|ref|ZP_07078691.1| YhgF like protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|28270283|emb|CAD63184.1| transcription accessory protein [Lactobacillus plantarum WCFS1]
 gi|300493623|gb|EFK28796.1| YhgF like protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 723

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVH+S+L+ + +      V  GD  TVWV+ +D + R 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHVSKLTDKFLKDPRQAVAVGDIVTVWVEEVD-EQRQ 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|108804846|ref|YP_644783.1| 30S ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941]
 gi|108766089|gb|ABG04971.1| SSU ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941]
          Length = 411

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V K++ FGAFV      +GL+HIS+L+   V    ++V+ GD V  +++D D
Sbjct: 296 VGDVIHGRVTKLVSFGAFVEVAEGVEGLIHISELAEHHVETPDEIVRSGDEVDARVIDVD 355



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           I KG V  ++DFGAFV   G  DGL+HIS+LS   V   S
Sbjct: 214 IVKGTVSNLVDFGAFVDLDGI-DGLIHISELSWNHVDHPS 252


>gi|329954547|ref|ZP_08295638.1| Tex-like protein [Bacteroides clarus YIT 12056]
 gi|328527515|gb|EGF54512.1| Tex-like protein [Bacteroides clarus YIT 12056]
          Length = 713

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+  +     G V  + +FGAFV      +GL+H+SQL+ + V+  +++V     
Sbjct: 628 VRTIDDL-RIGMELPGIVGNITNFGAFVDIGIKENGLIHLSQLAQKYVSDPNEIVSIHQQ 686

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V VK+L  D +R +I+L+M  V+Q  G
Sbjct: 687 VRVKVLSVDTERKRIQLTMIGVEQGNG 713


>gi|312899597|ref|ZP_07758923.1| ribonuclease PH [Enterococcus faecalis TX0470]
 gi|311293276|gb|EFQ71832.1| ribonuclease PH [Enterococcus faecalis TX0470]
          Length = 451

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAINHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|300692113|ref|YP_003753108.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum PSI07]
 gi|299079173|emb|CBJ51841.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum PSI07]
          Length = 562

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 278 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 336

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 337 DIDEDKRRISLGMKQCKAN 355



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 197 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 255

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 256 NRVSLGVK 263



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 372 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLAIDVDKER 431

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 432 ISLGIK---QLSGDPF 444


>gi|322387425|ref|ZP_08061035.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
 gi|321141954|gb|EFX37449.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
          Length = 120

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G++  +  +GAFV       GL+HIS++ T  +    +V+K GD V V+++DFD+  GK 
Sbjct: 9   GRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYEVLKIGDEVQVQVVDFDEYTGKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSIRTLEE 77


>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
 gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
          Length = 253

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 20/193 (10%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D+ +R+DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G  +       + G
Sbjct: 7   DQNLRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAV-YGPHQ-------VRG 58

Query: 369 TQRNDFMMHYNFLPCA-TGEVSRMGAPSRREIGHGRLARRAIH-----PVLPQTAQFPYT 422
             R   ++    + C  +  V       +R  G  +   +++H         +T  +P +
Sbjct: 59  --RTKPLLDAAVINCQYSSAVFSTEERKKRPRGDKKSQEKSMHLCQALSAAIKTELYPKS 116

Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  E+ +SDG S  A V  S+LAL+DAG+P+ + V      L    ++ I L D++ 
Sbjct: 117 QIDIFVEVLQSDGGSFSAAVNVSTLALIDAGIPLKEYVTSCTASL---ANENIPLVDVTY 173

Query: 482 DEDHLGHMDFKVA 494
            E+  G     +A
Sbjct: 174 LEESCGGPTLTIA 186


>gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+   +A +++G+ + G+  + L
Sbjct: 119 VIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQ-GEAVLDL 177

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
             +   ED     D  V  T +G
Sbjct: 178 DYL---EDSAAETDLNVVMTSAG 197


>gi|115456549|ref|NP_001051875.1| Os03g0844900 [Oryza sativa Japonica Group]
 gi|41469634|gb|AAS07357.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
           sativa Japonica Group]
 gi|108712064|gb|ABF99859.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
           Japonica Group]
 gi|113550346|dbj|BAF13789.1| Os03g0844900 [Oryza sativa Japonica Group]
 gi|215712403|dbj|BAG94530.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 339

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVH--FCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH  F        GLVHIS++S + V    D + EGDTV V
Sbjct: 178 KIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTVKV 237

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +++ D ++ +I LS++ ++++
Sbjct: 238 IVVNIDMEKSRIALSIRQLEED 259


>gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121]
 gi|259494126|sp|C1A1V2|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121]
          Length = 261

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R +    G      GS L   G+T+ +   ++    +E       G+  
Sbjct: 3   TREDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASV----EEGVPRWRKGSGL 58

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  S  G    R     RL  R++   +   A    T+ +  
Sbjct: 59  GWLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A V G+ +AL+DA              PIS  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTAAVTGAYVALVDAVTYLRAADLLSDPQPISCGIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDTG 198


>gi|254555635|ref|YP_003062052.1| transcription accessory protein [Lactobacillus plantarum JDM1]
 gi|254044562|gb|ACT61355.1| transcription accessory protein [Lactobacillus plantarum JDM1]
          Length = 723

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVH+S+L+ + +      V  GD  TVWV+ +D + R 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHVSKLTDKFLKDPRQAVAVGDIVTVWVEEVD-EQRQ 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|325857413|ref|ZP_08172468.1| 30S ribosomal protein S1 [Prevotella denticola CRIS 18C-A]
 gi|327314246|ref|YP_004329683.1| 30S ribosomal protein S1 [Prevotella denticola F0289]
 gi|325483123|gb|EGC86103.1| 30S ribosomal protein S1 [Prevotella denticola CRIS 18C-A]
 gi|326945157|gb|AEA21042.1| 30S ribosomal protein S1 [Prevotella denticola F0289]
          Length = 593

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 200 AELEAQRKEIISHL---EKGQILEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 255

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV     + V +LDFD+  K I L +K
Sbjct: 256 HEVVSLDQKINVVILDFDEEKKRIALGLK 284



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L   DR +
Sbjct: 305 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDEVEAVILTL-DREE 363

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 364 RKMSLGI 370


>gi|22298135|ref|NP_681382.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
 gi|22294313|dbj|BAC08144.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
          Length = 249

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 28/247 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R    Q    Q   GS L   G TQ +  V+      E     L GT + 
Sbjct: 12  RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSF----KEGVPKFLEGTGQG 67

Query: 373 DFMMHYNFLPCAT-----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      E  ++   + +EI   RL  R++   +  +     TL + +
Sbjct: 68  WLTAEYRMLPSATRPRQEREFLKLSGRT-QEI--QRLIGRSLRSAVDLSLLGECTLIVDA 124

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++D  +    + G  +AL+DA       GV    P+   VA +++GL+ D + ++  
Sbjct: 125 DVLQADAGTRSLAITGGYIALVDALSALLQQGVLRKSPLRHQVAAVSVGLIDD-EPYL-- 181

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S  ED    +DF V  T SG    +Q   ++G      +   L  A++G   ++   
Sbjct: 182 -DLSYAEDVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQ 240

Query: 536 SKVLSES 542
            +VL+ S
Sbjct: 241 QRVLAPS 247


>gi|86356020|ref|YP_467912.1| ribonuclease PH [Rhizobium etli CFN 42]
 gi|123513255|sp|Q2KDA1|RNPH_RHIEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86280122|gb|ABC89185.1| ribonuclease PH protein [Rhizobium etli CFN 42]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +E+    L  T +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G  +AL D 
Sbjct: 117 DVIQADGGTRTASITGGWIALYDC 140


>gi|51246699|ref|YP_066583.1| 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
 gi|50877736|emb|CAG37576.1| related to 30S ribosomal protein S1 [Desulfotalea psychrophila
           LSv54]
          Length = 396

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTS 661
           IEAA+E+      VP    I  G+VV++  FGAFV+     DGL+HIS+L S  R+    
Sbjct: 269 IEAAKEL------VP--GTILTGKVVRLAQFGAFVNIAEGIDGLIHISRLGSGRRINHPR 320

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLS 686
           + V+EG  + VK+   D D  +I L+
Sbjct: 321 EAVEEGQEIEVKVESVDSDSKRISLA 346


>gi|161611256|ref|YP_296774.2| 30S ribosomal protein S1 [Ralstonia eutropha JMP134]
          Length = 564

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 280 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 338

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 339 DIDEDKRRISLGMKQCKAN 357



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 199 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 257

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 258 NRVSLGVK 265



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 374 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLGIDVDKER 433

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 434 ISLGIK---QLSGDPF 446


>gi|326803018|ref|YP_004320836.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650457|gb|AEA00640.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 152

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  ++ FG FV       GLVHIS++S   +   +D +++GD V   +   
Sbjct: 4   EVGEKVTGKVTGIVKFGVFVDLGDGNSGLVHISEISDSYIKDINDYLQKGDEVTAIVTKI 63

Query: 678 DDRGKIKLSMK-VVDQNTGKP 697
              GKI LSMK    QN  +P
Sbjct: 64  QPDGKIALSMKDAKGQNQAEP 84


>gi|218961511|ref|YP_001741286.1| 30S ribosomal subunit protein S1 (modular protein) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730168|emb|CAO81080.1| 30S ribosomal subunit protein S1 (modular protein) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 932

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 64/109 (58%), Gaps = 10/109 (9%)

Query: 585 VNIDDDG-TVKIASSSLAEIEAAR---EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           VNID++   + ++   + E EA +   E++R I    +++    G+V  +  +GAF+   
Sbjct: 249 VNIDEEHHNIILSRRQVLEEEAEQKRQELLRKI----QIDAELDGEVKNITQYGAFIDLG 304

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           G  DGL+H++ +S  ++   S++++ GD V VK+++FD +  +I L MK
Sbjct: 305 GI-DGLLHLTDMSWGKLNHPSEMLQIGDKVKVKVINFDPETNRISLGMK 352



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           G+VV +  FGAFV      +GLVHIS++S T+++      +K G+T+   +LD D   K 
Sbjct: 374 GKVVNLKPFGAFVELEPGVEGLVHISEMSWTKKITDAHKFLKIGETINAIVLDIDKENKR 433

Query: 683 IKLSMKVVDQN 693
           I L MK ++ N
Sbjct: 434 ISLGMKQMEPN 444


>gi|158521992|ref|YP_001529862.1| ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
 gi|158510818|gb|ABW67785.1| ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
          Length = 604

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++ ++ D     ++ +G V  + ++G FV   G  DGL+HI+ +S  RV   S++   G
Sbjct: 202 ELMETLAD----GQVVEGIVKNITEYGVFVDLGGI-DGLLHITDISWGRVRHPSELFTVG 256

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V +K+L FD D+ KI L MK
Sbjct: 257 DNVTLKVLSFDLDKKKISLGMK 278



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V DFG FV      +GLVH+S++STER+       + G  +  ++++ + D  KI
Sbjct: 474 GVVTNVTDFGIFVELEEGIEGLVHVSEVSTERIKTPVGQYEVGAELTARVMNVNADERKI 533

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K +D    K ++
Sbjct: 534 GLSIKRLDVEDDKTLL 549



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + ++G FV      +GL+H+S++S T ++   S VV  G+ V   +LD      +
Sbjct: 300 GKVVSITNYGIFVELEEGVEGLIHVSEISWTRKIRHPSKVVNIGEEVDAVVLDIQPGNRR 359

Query: 683 IKLSMKVVDQN 693
           I L MK V+ N
Sbjct: 360 ISLGMKQVEPN 370


>gi|300813325|ref|ZP_07093678.1| S1 RNA binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512563|gb|EFK39710.1| S1 RNA binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 148

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++DFGAFV      DGL+H+SQ+  E + K  D ++ G  V VK+++ D +  KI LS+K
Sbjct: 74  ILDFGAFVRLEEGVDGLLHVSQICREHIEKPQDRLEIGQEVEVKVIEIDQENKKISLSIK 133

Query: 689 VV 690
            +
Sbjct: 134 AL 135



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           DGLVHIS+LS  RV   S+VV  GD V V++L  D ++ +I L +K   Q T KP
Sbjct: 2   DGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEKDRIALGLK---QTTEKP 53


>gi|295401354|ref|ZP_06811325.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109686|ref|YP_003988002.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
 gi|294976569|gb|EFG52176.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214787|gb|ADP73391.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 121

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I KG+V  +  +G FV       GLVHIS++S   V    D V  GD + VK+L  
Sbjct: 5   EVGSIVKGKVTGIQPYGVFVELDRETQGLVHISEISHGFVKNIKDYVNVGDEITVKVLSI 64

Query: 678 DDRGK-IKLSMKVVDQ 692
           D   K   LSM+ V++
Sbjct: 65  DPHTKRASLSMRAVEE 80


>gi|259906754|ref|YP_002647110.1| ribonuclease PH [Erwinia pyrifoliae Ep1/96]
 gi|224962376|emb|CAX53831.1| Ribonuclease PH (TRNA nucleotidyltransferase) [Erwinia pyrifoliae
           Ep1/96]
 gi|283476540|emb|CAY72368.1| ribonuclease PH [Erwinia pyrifoliae DSM 12163]
 gi|310765964|gb|ADP10914.1| ribonuclease PH [Erwinia sp. Ejp617]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA I++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVSIGKLKANPMKGMVAAISVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
 gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 25/203 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +S      +   GS L   G+T+ I   ++     E     L  +++
Sbjct: 3   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASI----VEGVPRFLKNSEQ 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E SR G    R +   RL  R++   L      PYT+ I 
Sbjct: 59  GWLTAEYGMLPRSTHSRMDREASR-GKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + GS +A+++A       G+    P+   VA +++G+ K     + 
Sbjct: 118 CDVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKG----VP 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDS 498
           + D+   ED   H D  V  TD+
Sbjct: 174 VLDLDYAEDSNAHTDMNVVMTDN 196


>gi|76580232|gb|ABA49707.1| ribonuclease PH [Burkholderia pseudomallei 1710b]
          Length = 622

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++  R  E   +  
Sbjct: 380 MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERG 439

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 440 QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 495

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+   G 
Sbjct: 496 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF--GG 553

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
             ++  D+  DED     D  V  T +G
Sbjct: 554 TPVL--DLDYDEDSACDTDMNVVMTGAG 579


>gi|325568175|ref|ZP_08144616.1| S1 RNA-binding domain protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158376|gb|EGC70527.1| S1 RNA-binding domain protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 147

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V V +   
Sbjct: 4   EVGAKLKGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLSVGDEVTVLVTAI 63

Query: 678 DDRGKIKLSMK 688
            + GKI LS++
Sbjct: 64  GNDGKIGLSIR 74


>gi|292486561|ref|YP_003529429.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|292897799|ref|YP_003537168.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291197647|emb|CBJ44742.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291551976|emb|CBA19013.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|312170622|emb|CBX78885.1| ribonuclease PH [Erwinia amylovora ATCC BAA-2158]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA I++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVFIGKLKANPMKGMVAAISVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|194288913|ref|YP_002004820.1| 30S ribosomal protein s1 [Cupriavidus taiwanensis LMG 19424]
 gi|193222748|emb|CAQ68751.1| 30S ribosomal subunit protein S1 [Cupriavidus taiwanensis LMG
           19424]
          Length = 564

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 280 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 338

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 339 DIDEDKRRISLGMKQCKAN 357



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 199 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 257

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 258 NRVSLGVK 265



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 374 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQESGEEAVRKYKKGDEVEAVVLGIDVDKER 433

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 434 ISLGIK---QLSGDPF 446


>gi|332711140|ref|ZP_08431074.1| RNAse PH [Lyngbya majuscula 3L]
 gi|332350122|gb|EGJ29728.1| RNAse PH [Lyngbya majuscula 3L]
          Length = 234

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 22/229 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R I  +    +   GS L   G+T+ +  VT+     E+    L  T   
Sbjct: 5   RPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTV----QEEVPRFLKDTGSG 60

Query: 373 DFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E  R  +   S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPGATPERQRRELLKLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVI 120

Query: 431 ESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL+DA       GV    P+   VA +++GL+ +G+ F+ L+ I
Sbjct: 121 QADAGTRTTSITGGYVALVDAVDKLVKTGVLERSPLIHQVAAVSVGLL-EGEPFLDLNYI 179

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRG 527
              ED    +DF V   D  GI  +Q   + G  + + +   +  A++G
Sbjct: 180 ---EDVAAEVDFNVVMNDEMGIIEVQGTAESGAYTRHQLNQLIDLAEKG 225


>gi|332187529|ref|ZP_08389266.1| ribosomal protein S1 [Sphingomonas sp. S17]
 gi|332012458|gb|EGI54526.1| ribosomal protein S1 [Sphingomonas sp. S17]
          Length = 569

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I  + E  +I  G V  + D+GAFV   G  DGL+H++ L
Sbjct: 173 IVVSRRAVLEETRAEQRSGLIQSLAE-GQIIDGVVKNITDYGAFVDLGGI-DGLLHVTDL 230

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S +RV   S+++  GDTV V+++  + D  +I L MK ++ +
Sbjct: 231 SYKRVNHPSEMIAIGDTVRVQIIRINKDTQRISLGMKQLESD 272


>gi|303245616|ref|ZP_07331899.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
 gi|302492879|gb|EFL52744.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D   V  + KG V  + DFG FV      +GLVH+S++S ++V   +++ KEGD +  
Sbjct: 460 VPDTYPVGTMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAELYKEGDEIEA 519

Query: 673 KLLDFD-DRGKIKLSMKVV 690
           K++    D  ++ LS+K +
Sbjct: 520 KVIHVSADERRLGLSIKSI 538



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M + +    E  ++  G+V  + ++G FV   G  DGL+HI+ +S +R+    ++V  GD
Sbjct: 197 MRKDLLKTLEEGQVVTGRVKNITEYGVFVDLGGL-DGLMHITDMSWKRIKHPKELVHLGD 255

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            + +K+L FD ++ K+ L MK
Sbjct: 256 ELELKVLSFDQEKQKVSLGMK 276



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  ++D+GAFV      +GLVHIS++S T ++   S +V  GD V V +L  D ++ +
Sbjct: 298 GKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKR 357

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 358 ISLGMKQVRPN 368



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I +G V  + +FG F+      DGL+H+S +S T++V    ++ K GD V  K+L  D +
Sbjct: 382 ILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKE 441

Query: 680 RGKIKLSMKVVDQN 693
             K  L +K + ++
Sbjct: 442 NEKFTLGIKQLSED 455


>gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
 gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EETVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+S+A+ DA             P+   VA +++G++ +     IL
Sbjct: 117 DVIQADGGTRTAAISGASVAMADAFAHLVAKGKLKANPMKSHVAAVSVGILGEN----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A++G + I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238


>gi|218528482|ref|YP_002419298.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
 gi|254808592|sp|B7L092|RNPH_METC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218520785|gb|ACK81370.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 22/231 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K G   + L
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYK-GQPVLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D + D       +F V G   GI  +Q   ++   ++   +  L+ AK G
Sbjct: 176 -DYAEDSAAETDANFVVTG-KGGIVEVQGTAELEPFTDEQFLELLRLAKGG 224


>gi|41469635|gb|AAS07358.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
           sativa Japonica Group]
 gi|108712065|gb|ABF99860.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
           Japonica Group]
 gi|218194088|gb|EEC76515.1| hypothetical protein OsI_14295 [Oryza sativa Indica Group]
 gi|222626154|gb|EEE60286.1| hypothetical protein OsJ_13343 [Oryza sativa Japonica Group]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVH--FCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH  F        GLVHIS++S + V    D + EGDTV V
Sbjct: 178 KIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTVKV 237

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +++ D ++ +I LS++ ++++
Sbjct: 238 IVVNIDMEKSRIALSIRQLEED 259


>gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857753|dbj|BAD41911.1| ribosomal protein S1-like RNA-binding domain [Symbiobacterium
           thermophilum IAM 14863]
          Length = 764

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV      DGLVH+SQLS + V   S+VV+ GD V VK+++ D  R +I
Sbjct: 656 GTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHPSEVVQVGDVVRVKVIEVDLKRQRI 715

Query: 684 KLSMKVVD 691
            LSMK+ D
Sbjct: 716 GLSMKLGD 723


>gi|23097526|ref|NP_690992.1| hypothetical protein OB0071 [Oceanobacillus iheyensis HTE831]
 gi|22775749|dbj|BAC12027.1| polyribonucleotide nucleotidyltransferase [Oceanobacillus iheyensis
           HTE831]
          Length = 127

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   ++ +  GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELEKGTTGLVHISEVADNYVKDINEHLTVGDEVKVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
 gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii RSA 334]
 gi|61216043|sp|Q83EL9|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043758|sp|A9KGR9|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043759|sp|A9NB33|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii RSA 334]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 25/203 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +S      +   GS L   G+T+ I   ++     E     L  +++
Sbjct: 1   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASI----VEGVPRFLKNSEQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E SR G    R +   RL  R++   L      PYT+ I 
Sbjct: 57  GWLTAEYGMLPRSTHSRMDREASR-GKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + GS +A+++A       G+    P+   VA +++G+ K     + 
Sbjct: 116 CDVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKG----VP 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDS 498
           + D+   ED   H D  V  TD+
Sbjct: 172 VLDLDYAEDSNAHTDMNVVMTDN 194


>gi|325270523|ref|ZP_08137123.1| 30S ribosomal protein S1 [Prevotella multiformis DSM 16608]
 gi|324987099|gb|EGC19082.1| 30S ribosomal protein S1 [Prevotella multiformis DSM 16608]
          Length = 593

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 200 AELEAQRKEIISHL---EKGQILEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 255

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV     + V +LDFD+  K I L +K
Sbjct: 256 HEVVSLDQKINVVILDFDEEKKRIALGLK 284



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L   DR +
Sbjct: 305 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDEVEAVILTL-DREE 363

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 364 RKMSLGI 370


>gi|289672870|ref|ZP_06493760.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5]
          Length = 186

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 20/172 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVK 468
           + ++DG +  A++ G+ +AL DA            G P+ + +A +++G+ +
Sbjct: 119 VIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ 170


>gi|94309667|ref|YP_582877.1| 30S ribosomal protein S1 [Cupriavidus metallidurans CH34]
 gi|93353519|gb|ABF07608.1| 30S ribosomal subunit protein S1 [Cupriavidus metallidurans CH34]
          Length = 564

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 280 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 338

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 339 DIDEDKRRISLGMKQCKAN 357



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 199 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 257

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 258 NRVSLGVK 265



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 374 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQESGEEAVRKYKKGDEVEAVVLGIDVDKER 433

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 434 ISLGIK---QLSGDPF 446


>gi|325922079|ref|ZP_08183873.1| ribosomal protein S1 [Xanthomonas gardneri ATCC 19865]
 gi|325547416|gb|EGD18476.1| ribosomal protein S1 [Xanthomonas gardneri ATCC 19865]
          Length = 358

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P  ++++ G+V  V D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 72  PANSRVF-GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVL 130

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK V  N
Sbjct: 131 DVDEERRRISLGMKQVAAN 149



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 2/58 (3%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R ++ L +K
Sbjct: 1   DYGAFVDLGGI-DGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLK 57



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLD 676
           N    GQ+  + DFG F+   G  DGLVH+S +S     +  DVV   K+GDT+   +L 
Sbjct: 161 NDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGE--DVVRNYKKGDTLEAVVLA 218

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I L +K ++Q+
Sbjct: 219 VDPERERISLGVKQLEQD 236


>gi|113866824|ref|YP_725313.1| 30S ribosomal protein S1 [Ralstonia eutropha H16]
 gi|113525600|emb|CAJ91945.1| SSU ribosomal protein S1 [Ralstonia eutropha H16]
          Length = 564

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 280 PQGTRLF-GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 338

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 339 DIDEDKRRISLGMKQCKAN 357



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L FD ++
Sbjct: 199 IVNGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKILKFDQEK 257

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 258 NRVSLGVK 265



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS +   + +    K+GD V   +L  D D+ +
Sbjct: 374 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVLGIDVDKER 433

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 434 ISLGIK---QLSGDPF 446


>gi|292670964|ref|ZP_06604390.1| 30S ribosomal protein S1 [Selenomonas noxia ATCC 43541]
 gi|292647585|gb|EFF65557.1| 30S ribosomal protein S1 [Selenomonas noxia ATCC 43541]
          Length = 384

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  GD V VK+L  D  R +
Sbjct: 278 EGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTGDVVLVKVLRIDTKRKR 337

Query: 683 IKLSM 687
           I LS+
Sbjct: 338 ISLSI 342



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLL 675
           E  ++ +G V +++D+GAF+   G  DGL HIS L+  RV   S+V++ G    V+VK +
Sbjct: 187 EPEQVVRGTVKRLVDYGAFIDIGGV-DGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSV 245

Query: 676 DFDDRGKIKLSMK 688
           D + + +I LS+K
Sbjct: 246 DREAK-RISLSVK 257


>gi|253996885|ref|YP_003048949.1| 30S ribosomal protein S1 [Methylotenera mobilis JLW8]
 gi|253983564|gb|ACT48422.1| ribosomal protein S1 [Methylotenera mobilis JLW8]
          Length = 500

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G+ V  K+L FD ++
Sbjct: 204 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLTVGEEVEAKVLKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 263 NRVSLGIK 270



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+GAFV      +GLVH+S++  T +      + + GD V V +L+ D+ R +
Sbjct: 292 GKVSNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNIHPGKIAQLGDEVEVMILEIDEARRR 351

Query: 683 IKLSMKVVDQN 693
           + L MK    N
Sbjct: 352 LSLGMKQCQAN 362



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           GQ+  + DFG F+   G  DGLVH+S LS  +  + +    K+GD +   +L  D ++ +
Sbjct: 379 GQIKSITDFGVFIGLPGGIDGLVHLSDLSWAQSGEEAIRNFKKGDELQAVILAIDVEKER 438

Query: 683 IKLSMK 688
           I L +K
Sbjct: 439 ISLGVK 444


>gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80]
 gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|157803695|ref|YP_001492244.1| 30S ribosomal protein S1 [Rickettsia canadensis str. McKiel]
 gi|157784958|gb|ABV73459.1| 30S ribosomal protein S1 [Rickettsia canadensis str. McKiel]
          Length = 568

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      I +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMILEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           ++    V V ++ FD++ K I L +K +D N
Sbjct: 248 LEFNQKVKVMVIKFDEKTKRISLGIKQLDSN 278


>gi|288799972|ref|ZP_06405431.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333220|gb|EFC71699.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039]
          Length = 591

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +   + I    E  +I +G V  +  +G F+   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQK---KEIISKLEKGQILEGTVKNITSYGVFIDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV   + + V +LDFDD  K I L +K
Sbjct: 253 HEVVALDEKINVVILDFDDEKKRIALGLK 281



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +  GD V   +L  D +  
Sbjct: 302 KGKVVVIADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFLHVGDEVEAVVLTLDREER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWETI 378


>gi|150388019|ref|YP_001318068.1| RNA-binding S1 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149947881|gb|ABR46409.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 138

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + +FGAF+     + GLVHIS+++ + V    D +K+   V VK+L  
Sbjct: 4   QVGTVVEGTVSGITNFGAFIDLGEGQTGLVHISEVADDYVKNIRDYLKDDQKVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
              GKI LS+K
Sbjct: 64  GKDGKISLSIK 74


>gi|116621034|ref|YP_823190.1| 30S ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224196|gb|ABJ82905.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 572

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 7/88 (7%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           + D  +V +   G V +V DFGAFV      +GLVH+S++S ++++ + +D+VK GD V 
Sbjct: 292 VADKYKVGERVTGSVTRVTDFGAFVELEKGIEGLVHLSEMSWSKKIRRPADMVKPGDQVE 351

Query: 672 VKLLDFD--DRGKIKLSMKVVDQNTGKP 697
           V +L  +  DR +I L +K   Q  G P
Sbjct: 352 VVVLGVNAADR-RISLGLK---QALGDP 375



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDF 677
           V  + +G V  +  FGAFV      +G+VH+  +S E R+    DVVK G  V  ++L+ 
Sbjct: 385 VGTVIEGPVTSIQKFGAFVQVAEGVEGMVHVGDISAEKRINHPQDVVKVGQVVKAQVLEL 444

Query: 678 D-DRGKIKLSMK 688
           D ++ +++L MK
Sbjct: 445 DVEKRRLRLGMK 456



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +I  G +  + D+GAFV   G  D L+H++ +S  RV K +DV+  GD V  K+L  D 
Sbjct: 214 GEIVHGTIRSLTDYGAFVDIGGV-DALLHVADISWGRVNKPADVLNVGDKVEAKILKVDP 272

Query: 680 -RGKIKLSMK 688
            + +I L +K
Sbjct: 273 AKKRISLGLK 282


>gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4]
 gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4]
          Length = 261

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 19/200 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +RD++   G      GS L   G T+ +   ++     E       G+   
Sbjct: 8   RADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASV----TEGVPRWRKGSGLG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT E  R G  S R ++G       RL  R++   +  +A    T+ + 
Sbjct: 64  WLTAEYAMLPAATHE--RSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGENTIALD 121

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
            ++ ++DG +  A + G+ +AL DA       G     P+ G    +     D  +L D+
Sbjct: 122 CDVLQADGGTRTAAITGAYVALADAITWLQSSGAVTGNPLTGAVAAVSVGVVDGHVLCDL 181

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
             +ED    +D  V  TD G
Sbjct: 182 PYEEDSRAEVDMNVVCTDGG 201


>gi|303229902|ref|ZP_07316678.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515458|gb|EFL57424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALTKSPWDVAEETLHVGDVITGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
 gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
          Length = 257

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 76  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 135

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 136 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 192 CDLEYVEDSAADTDMNVVMTEEG 214


>gi|168014820|ref|XP_001759949.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688699|gb|EDQ75074.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 389

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  V  +GAF+   G   GL+HISQ+S +R+     V+  GD + V +L  D
Sbjct: 269 IGSVVVGTVQTVKPYGAFIDIGGV-SGLLHISQISHDRLTSVETVLSPGDKLKVMVLSQD 327

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG+I LS K ++   G
Sbjct: 328 KDRGRISLSTKKLEPTPG 345


>gi|304383005|ref|ZP_07365484.1| 30S ribosomal protein S1 [Prevotella marshii DSM 16973]
 gi|304335858|gb|EFM02109.1| 30S ribosomal protein S1 [Prevotella marshii DSM 16973]
          Length = 591

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +   + I    E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+  
Sbjct: 197 AEMEAQK---KEIISKLEKGQILEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV+    + V +LDFDD  K I L +K
Sbjct: 253 HEVVELDQKINVVILDFDDEKKRIALGLK 281



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +  GD V   +L  D +  
Sbjct: 302 KGKVVVIADYGAFVEVAPGVEGLIHVSEMSWSQHLRSAQDFLHVGDEVETVILTLDREER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWEAI 378


>gi|154500957|ref|ZP_02038995.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
 gi|150269981|gb|EDM97500.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 36/208 (17%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR------EDEQYVDSL 366
           R+DGR ++ +R I    G+ +   GS L   G+T  +   ++  R      E E +V + 
Sbjct: 3   RIDGRANDQLRPIEIIPGINKFAEGSCLIRCGNTHVLCTASVEDRVPPHVPEGEGWVTA- 61

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAP----SRREIGHGRLARRAIHPVLPQTAQFPYT 422
                      Y+ LP A  E S+        S R     RL  R++   +   A  P T
Sbjct: 62  ----------EYSMLPRANRERSKRDIAKLKLSARSAEIQRLVGRSLRAAVDMKALGPRT 111

Query: 423 LRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGD 471
           + +  ++ + DG +  A+V G  +A       L++ GV    P+   VA I+ G+V   D
Sbjct: 112 ITVDCDVLQGDGGTRTASVTGGFVALSFALHKLVEEGVLEAMPLKTCVAAISAGIV---D 168

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D ++L D+  +ED    +D     T  G
Sbjct: 169 DQLLL-DLCYEEDSSAQVDLNCVMTGEG 195


>gi|32491233|ref|NP_871487.1| 30S ribosomal protein S1 [Wigglesworthia glossinidia endosymbiont
           of Glossina brevipalpis]
 gi|25166440|dbj|BAC24630.1| rpsA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 554

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAF+   G  DGL+HI+ ++ +RV   +++V  GD + VK+L FD ++ ++
Sbjct: 197 GVVKNLTDYGAFIDLGGV-DGLLHITDMAWKRVKHPNEIVSIGDEITVKILKFDKEKTRV 255

Query: 684 KLSMKVVDQN 693
            L +K + Q+
Sbjct: 256 SLGLKQLGQD 265



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G+V  + D+G FV      +GLVHIS++  T +    S VV  GDTV V +L
Sbjct: 275 PENVKI-SGKVTNLTDYGCFVEIEEGVEGLVHISEMDWTNKNIHPSKVVNVGDTVNVLVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  K
Sbjct: 334 DIDEERRRISLGLKQCKPNPWK 355



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S     +  + VKE   GD +   +L  D D
Sbjct: 368 QGRIKSITDFGIFIGLEGGIDGLVHLSDVSWN--IQGEEAVKEYKKGDIISAMVLQVDSD 425

Query: 680 RGKIKLSMK 688
           R +I L +K
Sbjct: 426 RERISLGIK 434


>gi|303232061|ref|ZP_07318764.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513167|gb|EFL55206.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALTKSPWDVAEETLHVGDVITGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
 gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
          Length = 257

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 76  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 135

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 136 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL--GED--VL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 192 CDLEYVEDSAADTDMNVVMTEEG 214


>gi|157827436|ref|YP_001496500.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
 gi|157802740|gb|ABV79463.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
          Length = 572

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      I +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 196 EARDEMLSKIKE----GMILEGTVKNITDYGAFIDL-GSVDGLLHLTDISWARVNHPSEV 250

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++    V V ++ F++  K I L MK +D N  + I
Sbjct: 251 LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKI 286


>gi|91205227|ref|YP_537582.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
 gi|123388135|sp|Q1RJH1|RS1_RICBR RecName: Full=30S ribosomal protein S1
 gi|91068771|gb|ABE04493.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
          Length = 572

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      I +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 196 EARDEMLSKIKE----GMILEGTVKNITDYGAFIDL-GSVDGLLHLTDISWARVNHPSEV 250

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++    V V ++ F++  K I L MK +D N  + I
Sbjct: 251 LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKI 286


>gi|315153645|gb|EFT97661.1| ribonuclease PH [Enterococcus faecalis TX0031]
          Length = 451

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A       G     PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLITGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|260431972|ref|ZP_05785943.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415800|gb|EEX09059.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKIGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R  A S ++ G      RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVITDPLVDPVAAVSCGI 166


>gi|218658235|ref|ZP_03514165.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli IE4771]
          Length = 41

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/29 (75%), Positives = 26/29 (89%)

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 2   VWVKLLGFDERGKVRLSMKVVDQATGQEI 30


>gi|332522642|ref|ZP_08398894.1| S1 RNA binding domain protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313906|gb|EGJ26891.1| S1 RNA binding domain protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 117

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
           + G +  +  +GAFV       GL+HIS++ T  +    D++  GD V V+++D+D+   
Sbjct: 7   FHGTITGIKPYGAFVALDNGTTGLIHISEIKTGYIDNIHDILAVGDAVDVQVVDYDEFNQ 66

Query: 682 KIKLSMKVVDQ 692
           K+ LSM+ +++
Sbjct: 67  KVSLSMRTLEE 77


>gi|15644630|ref|NP_229244.1| ribosomal protein S1 [Thermotoga maritima MSB8]
          Length = 543

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I D   VN +  G+V  ++  GAFV      +G V +S++S +R+ +  +++K G+ V 
Sbjct: 351 NIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVK 410

Query: 672 VKLLDFDDRG-KIKLSMKVVDQN 693
           VK+L  D    KI LS+K   +N
Sbjct: 411 VKILKIDKENRKITLSIKRTQEN 433


>gi|326793908|ref|YP_004311728.1| Tex-like protein [Marinomonas mediterranea MMB-1]
 gi|326544672|gb|ADZ89892.1| Tex-like protein [Marinomonas mediterranea MMB-1]
          Length = 721

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I++I D+  +N   +G +  +  FGAFV     +DGL+HIS +S + +     VV+ G T
Sbjct: 642 IKNINDL-SINMKLEGVITNITSFGAFVDIGVHQDGLIHISNISNQFIKDPRQVVRVGQT 700

Query: 670 VWVKLLDFD-DRGKIKL 685
           V ++++D D  R +I L
Sbjct: 701 VNIEVIDLDISRRRISL 717


>gi|33860870|ref|NP_892431.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33633812|emb|CAE18771.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 363

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D 
Sbjct: 244 EVGEVVIGSVKGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVNDQMKVMIIDL 302

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 303 DSERGRISLSTKALEPEPG 321


>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
 gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
 gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
 gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
          Length = 257

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 76  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 135

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  G+D  +L
Sbjct: 136 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GED--VL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 192 CDLEYVEDSAADTDMNVVMTEEG 214


>gi|332655285|ref|ZP_08421025.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
 gi|332515790|gb|EGJ45400.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 28/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE--QYVDSLSGTQ 370
           R+DGR ++ +R I     + +   GS L   G+T  +   ++   ED+  ++V    G  
Sbjct: 3   RIDGRKNDELRPIEIIPNINKFAEGSCLIRCGNTHVLCTASV---EDKPPRHVPEGEGW- 58

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIV 426
                  Y+ LP A  E SR      +  G      RL  R++  V+ +    P+ + I 
Sbjct: 59  ---VTAEYSMLPRANRERSRRDISKLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWNITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ + DG +  A++ G  +A+M A             PIS  VA ++ G+V D    + 
Sbjct: 116 CDVLQGDGGTRTASITGGFVAMMLAFQKMMEKGQLSEYPISGYVAAVSAGVVND----VP 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+  +ED    +D      D G
Sbjct: 172 MLDLCYEEDSSAMVDLNCVMDDQG 195


>gi|323699942|ref|ZP_08111854.1| ribosomal protein S1 [Desulfovibrio sp. ND132]
 gi|323459874|gb|EGB15739.1| ribosomal protein S1 [Desulfovibrio desulfuricans ND132]
          Length = 614

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G+V  + ++G F+   G  DGL+HI+ +S +R+    ++V  GD + +K+L+F
Sbjct: 204 EEGQVVQGKVKNITEYGVFIDL-GGLDGLLHITDMSWKRIKHPKEMVSLGDDLELKILNF 262

Query: 678 DDRG-KIKLSMK 688
           D  G K+ L +K
Sbjct: 263 DREGQKVSLGLK 274



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + DFG FV      +GLVH+S++S +++   S++ KEGDT+  K++    D  ++
Sbjct: 470 GTVTNITDFGLFVEVEEGIEGLVHVSEISRKKIKSPSEMFKEGDTIEAKVIHVSADERRL 529

Query: 684 KLSMK 688
            LS+K
Sbjct: 530 GLSIK 534



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G +  + D+GAFV      +GLVHIS++S T ++   S +VK G+ V V +L  D D+
Sbjct: 294 FTGVITNLADYGAFVELENGVEGLVHISEMSWTRKLRHPSQMVKVGEEVDVVVLGVDPDK 353

Query: 681 GKIKLSMKVVDQN 693
            +I L MK +  N
Sbjct: 354 KRISLGMKQISPN 366



 Score = 40.4 bits (93), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           + +G +  + +FG F+      DGL+H+S +S T+++   S+V K GD+V  K+L  D
Sbjct: 380 VLEGAIKNITEFGVFIGIEEGIDGLIHVSDISWTKKIRHPSEVYKVGDSVQAKVLTVD 437


>gi|254559085|ref|YP_003066180.1| ribonuclease PH [Methylobacterium extorquens DM4]
 gi|254266363|emb|CAX22127.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens DM4]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD--DFI 474
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K     D  
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQPVLDLD 176

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
              D + D D     +F V G   GI  +Q   ++   ++   +  L+ AK G
Sbjct: 177 YAEDSAADTD----ANFVVTG-KGGIVEVQGTAEMEPFTDEQFLELLRLAKGG 224


>gi|325473463|gb|EGC76658.1| tex protein [Treponema denticola F0402]
          Length = 817

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG++  V+DFGAFV        L+HIS++S   ++   + VK GD V  K++  D DR +
Sbjct: 649 KGKIKNVVDFGAFVDLGIKETALLHISEMSDSFISDPLEAVKVGDIVECKIISLDEDRRR 708

Query: 683 IKLSMKV 689
           I LS K 
Sbjct: 709 ISLSRKT 715


>gi|226326904|ref|ZP_03802422.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
 gi|225204741|gb|EEG87095.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
          Length = 251

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 23/206 (11%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R   R +  VR I+      +   GS L   GDT+ +   T+    ++     L G
Sbjct: 11  DNTMRPADRQANQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATV----EDGVPRFLKG 66

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLR 424
             +      Y  LP AT   +   A   ++ G      RL  R++   +   A   +T+ 
Sbjct: 67  QGQGWVTAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTIT 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+V DG+  
Sbjct: 127 VDCDVIQADGGTRTASISGACVALVDALNKMVEEGKLKKSPLKSMVAAVSVGIV-DGEP- 184

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             L D+   ED     D  V   D G
Sbjct: 185 --LCDLEYVEDSAAETDMNVVMIDDG 208


>gi|254419951|ref|ZP_05033675.1| ribosomal protein S1 [Brevundimonas sp. BAL3]
 gi|196186128|gb|EDX81104.1| ribosomal protein S1 [Brevundimonas sp. BAL3]
          Length = 567

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E AR   R+ +    +  ++ +G V  + D+GAFV   G  DGL+H++ +S
Sbjct: 173 IVVSRRAILEEARAEQRTELVGQLQEGEVREGVVKNITDYGAFVDLGGI-DGLLHVTDMS 231

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +RV+  S V+  GDTV V+++  + D  +I L MK
Sbjct: 232 WKRVSHPSQVLAVGDTVKVQIVKINPDTQRISLGMK 267


>gi|157693251|ref|YP_001487713.1| ribonuclease PH [Bacillus pumilus SAFR-032]
 gi|166991082|sp|A8FFY6|RNPH_BACP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157682009|gb|ABV63153.1| tRNA nucleotidyltransferase [Bacillus pumilus SAFR-032]
          Length = 242

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R I  + G +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASI----EDRVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A       G     PI+  +A I++G+  D    ++L
Sbjct: 117 DVIQADGGTRTASITGAFVAMTLAIQKLRAEGAIKQNPITDYLAAISVGI--DSQQGLLL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  V  T +G
Sbjct: 175 -DLNYEEDSSAEVDMNVIMTGAG 196


>gi|225433644|ref|XP_002264430.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089601|emb|CBI39420.3| unnamed protein product [Vitis vinifera]
          Length = 390

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +  I++  V  V D+GAFVH           GLVH+S++S + V    DV+ EGD V VK
Sbjct: 193 IGDIFEAMVGSVEDYGAFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVK 252

Query: 674 LLDFDD-RGKIKLSMKVVDQN 693
           ++  D  + +I LS+K ++++
Sbjct: 253 IVKVDRVKSRITLSIKQLEED 273


>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
 gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
          Length = 252

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 26/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I    G      GS L   G+T+ +   ++     E       G+   
Sbjct: 4   RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASV----TEGVPSWRRGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP AT E S+     R +IG       RL  R++   +   A    T+ I  
Sbjct: 60  WLTAEYSMLPAATHERSKR-ESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTAAITGAYVALADAVTYLGAGGKLADPQPLSCIIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDAG 198


>gi|319943161|ref|ZP_08017444.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
 gi|319743703|gb|EFV96107.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
          Length = 583

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 298 PQNTRMF-GKVTNITDYGAFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVMVL 356

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 357 EIDEDRRRISLGMKQTHAN 375



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 6/90 (6%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L++ E   +++ ++T+      + +G V  + D+GAFV   G  DGL+HI+ ++  RV  
Sbjct: 199 LSQGEERAKLLETLTE----GAVVQGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRH 253

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++V++ G  +  K+L FD ++ ++ L +K
Sbjct: 254 PTEVLQVGQEITAKVLKFDQEKNRVSLGIK 283



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD 678
           N   KG +  + DFG F+   G  DGLVH+S LS  +  + +    K+GD V   +L  D
Sbjct: 387 NDRVKGSIKSITDFGVFIGLPGGIDGLVHLSDLSWNKSGEEAVRDFKKGDEVEAVVLGID 446

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            +R +I L +K   Q  G P 
Sbjct: 447 VERERISLGIK---QLEGDPF 464


>gi|313501268|gb|ADR62634.1| Rph [Pseudomonas putida BIRD-1]
          Length = 240

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+   +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQ-GEAVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|168013345|ref|XP_001759360.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689290|gb|EDQ75662.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 854

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ G+V  V  +GAFV      +GLVH+S+L+   V   SD VK G  V V +L+ +++ 
Sbjct: 38  VFTGRVRFVQPYGAFVDIGAFTNGLVHVSELAPGYVKDVSDFVKVGQEVTVTVLEMNEKS 97

Query: 682 K-IKLSMK-------VVDQNTGKP 697
           K I L+M+       V    +GKP
Sbjct: 98  KRIALTMRDRESEAAVPGDGSGKP 121


>gi|115376634|ref|ZP_01463864.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
 gi|115366377|gb|EAU65382.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 777

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A RE ++++ DV E   + KG V  V    A        DGLVH+SQLST  V   S+V 
Sbjct: 629 ALREDLKTLEDVKE-GMVCKGVVTNVTAL-ARSWKSAPSDGLVHVSQLSTRFVKDXSEVA 686

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           K GD + VK+L  D  R ++ LS++ V +
Sbjct: 687 KVGDRLTVKVLSVDLARKRLALSVRAVQE 715


>gi|56750057|ref|YP_170758.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
 gi|81300400|ref|YP_400608.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
 gi|3122813|sp|O33698|RS1_SYNE7 RecName: Full=30S ribosomal protein S1
 gi|2570205|gb|AAB82045.1| ribosomal protein S1 of 30S ribosome [Synechococcus elongatus PCC
           7942]
 gi|7328457|dbj|BAA92864.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
 gi|22002498|gb|AAM82650.1| ribosomal protein S1 [Synechococcus elongatus PCC 7942]
 gi|56685016|dbj|BAD78238.1| nucleic acid binding protein [Synechococcus elongatus PCC 6301]
 gi|81169281|gb|ABB57621.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
          Length = 295

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 7/99 (7%)

Query: 600 LAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           L+E +AAR  ++R I    EV ++  G+V  +  FG FV   GA   L+ I+Q+S + VA
Sbjct: 176 LSERQAARTALVREI----EVGQLINGKVTGLKPFGVFVDLGGA-TALLPINQISQKFVA 230

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
               + K GD +   ++  D+ +G+I LS KV++ + G+
Sbjct: 231 DVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHPGE 269


>gi|323527036|ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001]
 gi|323384038|gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTDTTQRPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ETVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  DA             PIS  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVSKLLAAGRIESSPISDFVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|284040497|ref|YP_003390427.1| RNA binding S1 domain protein [Spirosoma linguale DSM 74]
 gi|283819790|gb|ADB41628.1| RNA binding S1 domain protein [Spirosoma linguale DSM 74]
          Length = 595

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 18/113 (15%)

Query: 584 KVNIDDDGTVKIASSSLAE--IEAAREMIRSITDVPEVNKIYKGQVVK-----VMDFGAF 636
           K+N  +D  V ++   L E  +EA R  I        +N + KGQV++     + +FG F
Sbjct: 182 KINYANDNVV-VSHKVLIEKDLEAQRAQI--------LNNLEKGQVLEGVIKNMTNFGVF 232

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +   G  DGL+HI+ +S  R++  S+V+     V V +LDFD D+ +I L MK
Sbjct: 233 IDLGGV-DGLLHITDISWGRISHPSEVLHLDQKVNVVVLDFDEDKKRISLGMK 284



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +KG V  + +FG F+      DGLVH+S LS T++V   SD +K GD + V +L+ D D 
Sbjct: 393 HKGMVRNLTNFGLFLELEEGIDGLVHVSDLSWTKKVKHPSDFIKVGDELEVLVLELDVDN 452

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 453 RRLALGHKQLEEN 465



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG++V V D+GAF+      +GL+H+S++S ++ +    + +K GD V  ++L   DR  
Sbjct: 305 KGKIVNVADYGAFLEIQPGVEGLIHVSEMSWSQHLRNPQEFLKVGDEVEAQVLTL-DRND 363

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 364 RKMSLGI 370


>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
 gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
          Length = 251

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 99/209 (47%), Gaps = 13/209 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    S
Sbjct: 7   LLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKGKNKS 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYT- 422
              ++ ND +++  +         R   P   R+        ++A+   + ++  +P + 
Sbjct: 66  ---SESNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAI-KSELYPRSQ 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + +  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  
Sbjct: 122 IDVYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQV 178

Query: 483 EDHLGHMDFKVAG--TDSGITAMQMDMKI 509
           E+  G     VA   T   I  ++M  + 
Sbjct: 179 EEISGGPKLTVAALPTSEKIAFLEMSERF 207


>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
          Length = 543

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I D   VN +  G+V  ++  GAFV      +G V +S++S +R+ +  +++K G+ V 
Sbjct: 351 NIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVK 410

Query: 672 VKLLDFDDRG-KIKLSMKVVDQN 693
           VK+L  D    KI LS+K   +N
Sbjct: 411 VKILKIDKENRKITLSIKRTQEN 433


>gi|78187586|ref|YP_375629.1| 30S ribosomal protein S1 [Chlorobium luteolum DSM 273]
 gi|78167488|gb|ABB24586.1| SSU ribosomal protein S1P [Chlorobium luteolum DSM 273]
          Length = 589

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           ++ G V  + DFG FV      DGLVHIS LS T+++   S++VK+   + VK+L FD
Sbjct: 390 LHNGTVSNITDFGVFVELEAGVDGLVHISDLSWTKKIRHPSELVKKNQELNVKVLKFD 447



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV + D+GAFV      +GLVHIS++S T+ +      V  G  V   +L+ D D  
Sbjct: 305 QGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHT 364

Query: 682 KIKLSMKVVDQN 693
           K+ LSMK V+++
Sbjct: 365 KLSLSMKRVNED 376



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV+    + V ++ F
Sbjct: 214 KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVVVGF 272

Query: 678 DDRGK-IKLSMK 688
           D+  K + L MK
Sbjct: 273 DENTKRVSLGMK 284


>gi|26991970|ref|NP_747395.1| ribonuclease PH [Pseudomonas putida KT2440]
 gi|148550402|ref|YP_001270504.1| ribonuclease PH [Pseudomonas putida F1]
 gi|61216052|sp|Q88C89|RNPH_PSEPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228303|sp|A5WB10|RNPH_PSEP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24987100|gb|AAN70859.1|AE016730_5 ribonuclease PH [Pseudomonas putida KT2440]
 gi|148514460|gb|ABQ81320.1| RNAse PH [Pseudomonas putida F1]
          Length = 240

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  + 
Sbjct: 3   RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++  A   ++ G      RL  R++   L  +     TL +  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL DA            G P+   +A +++G+ + G+  +  
Sbjct: 119 VIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQ-GEAVL-- 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 176 -DLDYLEDSAAETDLNVVMTSAG 197


>gi|315640555|ref|ZP_07895663.1| S1 RNA-binding domain protein [Enterococcus italicus DSM 15952]
 gi|315483759|gb|EFU74247.1| S1 RNA-binding domain protein [Enterococcus italicus DSM 15952]
          Length = 152

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V   ++V+K GD V V + + 
Sbjct: 4   EVGAKVPGKVSGITNFGAFIDLGAGKTGLVHISEVSNGFVKDINEVLKVGDEVTVLVTNI 63

Query: 678 DDRGKIKLSMK 688
              GKI LS++
Sbjct: 64  GADGKIGLSIR 74


>gi|296283442|ref|ZP_06861440.1| 30S ribosomal protein S1 [Citromicrobium bathyomarinum JL354]
          Length = 566

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I+D+ E  ++  G V  + D+GAFV   G  DGL+H++ +
Sbjct: 175 IVVSRRAVLEETRAEQRSELISDLAE-GQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDM 232

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           S +RV   S+V++ G TV V+++  + +  +I L MK ++ +
Sbjct: 233 SYKRVNHPSEVIEIGQTVTVQIIRINAETQRISLGMKQLESD 274



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           GQV  + ++GAFV      +GLVH+S++S T++      +V     V V +L+ D ++ +
Sbjct: 291 GQVTNITEYGAFVEVEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEVDSEKRR 350

Query: 683 IKLSMKVVDQN 693
           I L +K   +N
Sbjct: 351 ISLGLKQAQRN 361


>gi|260590941|ref|ZP_05856399.1| ribosomal protein S1 [Prevotella veroralis F0319]
 gi|260536806|gb|EEX19423.1| ribosomal protein S1 [Prevotella veroralis F0319]
          Length = 591

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+  
Sbjct: 200 AELEAQRKEIISHL---EKGQILEGTVKNITSYGVFVDLGGV-DGLVHITDLSWGRVSDP 255

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV     + V +LDFD+  K I L +K
Sbjct: 256 HEVVALDQKINVVILDFDEEKKRIALGLK 284



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L   DR +
Sbjct: 305 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTL-DREE 363

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 364 RKMSLGI 370


>gi|256828106|ref|YP_003156834.1| RNA binding S1 domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577282|gb|ACU88418.1| RNA binding S1 domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 710

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVHIS L+   V+   +VV+ G  V V +L+ D  R +I
Sbjct: 643 GIVTNVTRFGAFVDVGVHQDGLVHISNLADRYVSDPGEVVRAGQQVQVTVLEVDAKRRRI 702

Query: 684 KLSMK 688
            LSM+
Sbjct: 703 GLSMR 707


>gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
 gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
          Length = 252

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R IS   G   +  GS+L   G+T+ +   +L T    ++   L G  R
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASL-TAGVPRW---LKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL DA               P++  +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  T SG
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSG 207


>gi|148241514|ref|YP_001226671.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
 gi|147849824|emb|CAK27318.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
          Length = 367

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 252 EVGEVVLGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDL 310

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 311 DAERGRISLSTKALEPEPG 329


>gi|83945693|ref|ZP_00958038.1| 30S ribosomal protein S1 [Oceanicaulis alexandrii HTCC2633]
 gi|83850894|gb|EAP88754.1| 30S ribosomal protein S1 [Oceanicaulis alexandrii HTCC2633]
          Length = 565

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V  + D+GAFV   G  DGL+H++ +S  RV   S+VV+ G TV V+++  + D
Sbjct: 201 EVREGVVKNITDYGAFVDLGGI-DGLLHVTDMSWSRVGHPSEVVEVGQTVQVQIIKINKD 259

Query: 680 RGKIKLSMK 688
             +I L MK
Sbjct: 260 TQRISLGMK 268



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++KG+V  + ++GAFV      +GLVH+S++S T++      +V     V V +LD D D
Sbjct: 287 VFKGRVTNIAEYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLDVDPD 346

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 347 KRRVSLGIKQTQRN 360



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + +FG F+      DG+VH+S L  +R  + +    K+GDTV  K+LD D ++ 
Sbjct: 376 EGEVKNITEFGLFIGVDEEIDGMVHLSDLDWDRSGEDAIQDYKKGDTVRAKVLDVDVEKE 435

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K   Q  G P+
Sbjct: 436 RVSLGVK---QLGGDPM 449


>gi|332299900|ref|YP_004441821.1| RNA binding S1 domain protein [Porphyromonas asaccharolytica DSM
           20707]
 gi|332176963|gb|AEE12653.1| RNA binding S1 domain protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 598

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQV++     +  +GAFV   G  DGL+HI+ LS  R+   S+VV   + + V 
Sbjct: 210 ISKLEKGQVLEGVVKGITSYGAFVDLGGV-DGLIHITDLSWGRIGDPSEVVSLDEKINVV 268

Query: 674 LLDFD-DRGKIKLSMK 688
           +LDFD ++ +I L +K
Sbjct: 269 ILDFDEEKTRIALGLK 284



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ +V    ++G FV      DGL+HIS LS T +V   ++ VK G  + V++L+ D   
Sbjct: 391 HEARVRNFTNYGVFVELDEGIDGLIHISDLSWTRKVKHPNEFVKVGQMIEVQVLEIDKEN 450

Query: 682 -KIKLSMKVVDQN 693
            ++ L  K V +N
Sbjct: 451 RRLSLGHKQVTEN 463



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD----VVKEGDTVWVKLLDF 677
           I  G+VV + D+GAFV      +GL+H+S++S  +  +++     V +E D V V +LD 
Sbjct: 303 IIHGRVVVITDYGAFVEVIPGVEGLIHVSEMSWTQHLRSAQEFLTVGQEVDAV-VLMLDR 361

Query: 678 DDRGKIKLSMK 688
           +DR K+ L +K
Sbjct: 362 EDR-KMSLGLK 371


>gi|157964625|ref|YP_001499449.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
 gi|157844401|gb|ABV84902.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
          Length = 568

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++    V V ++ FD++ K I L +K +D N  + I
Sbjct: 248 LEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAI 283


>gi|194015596|ref|ZP_03054212.1| general stress protein 13 (GSP13) [Bacillus pumilus ATCC 7061]
 gi|194013000|gb|EDW22566.1| general stress protein 13 (GSP13) [Bacillus pumilus ATCC 7061]
          Length = 130

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQVKVLSV 65

Query: 678 DDR-GKIKLSMKVVDQ 692
           D++ GKI LS++   +
Sbjct: 66  DEKAGKISLSIRATQE 81


>gi|42526523|ref|NP_971621.1| tex protein, putative [Treponema denticola ATCC 35405]
 gi|41816716|gb|AAS11502.1| tex protein, putative [Treponema denticola ATCC 35405]
          Length = 817

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG++  V+DFGAFV        L+HIS++S   ++   + VK GD V  K++  D DR +
Sbjct: 649 KGKIKNVVDFGAFVDLGIKETALLHISEMSDSFISDPLEAVKVGDIVECKIISLDEDRRR 708

Query: 683 IKLSMKV 689
           I LS K 
Sbjct: 709 ISLSRKT 715


>gi|313886404|ref|ZP_07820126.1| putative ribosomal protein S1 [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924150|gb|EFR34937.1| putative ribosomal protein S1 [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 598

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQV++     +  +GAFV   G  DGL+HI+ LS  R+   S+VV   + + V 
Sbjct: 210 ISKLEKGQVLEGVVKGITSYGAFVDLGGV-DGLIHITDLSWGRIGDPSEVVSLDEKINVV 268

Query: 674 LLDFD-DRGKIKLSMK 688
           +LDFD ++ +I L +K
Sbjct: 269 ILDFDEEKTRIALGLK 284



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ +V    ++G FV      DGL+HIS LS T +V   ++ VK G  + V++L+ D   
Sbjct: 391 HEARVRNFTNYGVFVELDEGIDGLIHISDLSWTRKVKHPNEFVKVGQMIEVQVLEIDKEN 450

Query: 682 -KIKLSMKVVDQN 693
            ++ L  K V +N
Sbjct: 451 RRLSLGHKQVTEN 463



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD----VVKEGDTVWVKLLDF 677
           I  G+VV + D+GAFV      +GL+H+S++S  +  +++     V +E D V V +LD 
Sbjct: 303 IIHGRVVVITDYGAFVEVIPGVEGLIHVSEMSWTQHLRSAQEFLTVGQEVDAV-VLMLDR 361

Query: 678 DDRGKIKLSMK 688
           +DR K+ L +K
Sbjct: 362 EDR-KMSLGLK 371


>gi|302388702|ref|YP_003824523.1| RNA binding S1 domain protein [Thermosediminibacter oceani DSM
           16646]
 gi|302199330|gb|ADL06900.1| RNA binding S1 domain protein [Thermosediminibacter oceani DSM
           16646]
          Length = 125

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +I +G+V  +  FGAFV       GLVHIS+++   V    D +   D V VK++  
Sbjct: 4   DVGQIVEGKVTGITRFGAFVELPDGATGLVHISEVADGYVKDVRDYLNCNDVVKVKVIAI 63

Query: 678 DDRGKIKLSMKVVDQN 693
            + GKI LS++   +N
Sbjct: 64  SEDGKISLSIRKTREN 79


>gi|258652498|ref|YP_003201654.1| RNA binding S1 domain-containing protein [Nakamurella multipartita
           DSM 44233]
 gi|258555723|gb|ACV78665.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233]
          Length = 793

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+  V  + +G V  V  FGAFV     +DGLVH+S +S   ++   +VV  G  
Sbjct: 652 VEKIADL-RVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFISDPREVVTSGQV 710

Query: 670 VWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           V VK++  D+ R +I L+++ +D   G P
Sbjct: 711 VKVKVMAVDEQRKRISLTLR-LDDEPGAP 738


>gi|67459163|ref|YP_246787.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
 gi|75536405|sp|Q4ULF1|RS1_RICFE RecName: Full=30S ribosomal protein S1
 gi|67004696|gb|AAY61622.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
          Length = 568

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++    V V ++ FD++ K I L +K +D N  + I
Sbjct: 248 LEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAI 283


>gi|55380037|ref|YP_137887.1| translation initiation factor IF-2 subunit alpha [Haloarcula
           marismortui ATCC 43049]
 gi|68052076|sp|Q5UX22|IF2A_HALMA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|55232762|gb|AAV48181.1| probable translation initiation factor 2 alpha subunit [Haloarcula
           marismortui ATCC 43049]
          Length = 266

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE  ++  G++ ++ DFG FV    + G R GL HIS++++  +    D V EG TV  K
Sbjct: 7   PEPGELVVGKIDEIEDFGVFVDLDEYEGKR-GLCHISEVASGWIKNVRDHVNEGQTVVAK 65

Query: 674 LLDFDDRG-KIKLSMKVVDQNTGK 696
           +LD D+   +I LS+K V+ +  K
Sbjct: 66  VLDVDESAQQIDLSIKDVNDHQRK 89


>gi|238897898|ref|YP_002923577.1| 30S ribosomal subunit protein S1 [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465655|gb|ACQ67429.1| 30S ribosomal subunit protein S1 [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 564

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 9/94 (9%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S + AE E   E ++       V +   G V  + D+GAFV   G  DGL+HI+ +S 
Sbjct: 174 IKSENSAEREQLLERLK-------VGQEVSGTVKNLTDYGAFVELGGI-DGLLHITDMSL 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSM 687
           +RV   S+VV   D + VK+L  + RG +I++S+
Sbjct: 226 KRVKHPSEVVSISDQITVKILKIERRGDEIRISL 259



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           I++  +VN    G+V  + D+G FV      +GLVH+S++  T +    S VV   D+V 
Sbjct: 272 ISERYKVNDEITGRVTNLPDYGCFVEIEPGVEGLVHVSEMDWTNKNIHPSKVVSVQDSVK 331

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
           VK+LD D+ R +I L +K   +N  K
Sbjct: 332 VKVLDIDEQRRRISLGLKQCTENPWK 357


>gi|257884710|ref|ZP_05664363.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
 gi|257820548|gb|EEV47696.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ ++L  A             PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVSLKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESG 196


>gi|124023909|ref|YP_001018216.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
 gi|123964195|gb|ABM78951.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9303]
          Length = 367

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 250 EVGEVVIGAVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDL 308

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 309 DAERGRISLSTKALEPEPG 327


>gi|294781761|ref|ZP_06747094.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481871|gb|EFG29639.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 1_1_41FAA]
          Length = 827

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V VK+ D   +DR 
Sbjct: 567 GVVTKVLPYGAFVEIKAGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVKITDLHPEDR- 625

Query: 682 KIKLSMK 688
           K+KL +K
Sbjct: 626 KLKLGIK 632



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V++FG  V    A  G +HIS++S +R+ K SD  K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLEFGLAVD-INALKGFIHISEVSWKRLDKLSDAYKVGDKIKAIVVSLDEAKRNVKL 542

Query: 686 SMK 688
           S+K
Sbjct: 543 SIK 545


>gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226736948|sp|B5YFY8|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 236

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 16/233 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R I  +   ++   GS L   G+T+ I   ++  +      D   G   
Sbjct: 1   MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWIT 60

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            ++ M     P      S  G    R     RL  R +  V+        T+ I  ++ E
Sbjct: 61  AEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDCDVIE 120

Query: 432 SDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G  +AL       M+AG+    PI   +A I++G+V  G+  +   D+ 
Sbjct: 121 ADGGTRTASITGGYIALVEAVKKAMNAGMITENPIKDSIAAISVGIVL-GEPRL---DLC 176

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             ED    +D  +  T SG    +Q   +I   S+  ++  L  A++G   I+
Sbjct: 177 YAEDSQAEVDMNIVMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREII 229


>gi|167586475|ref|ZP_02378863.1| ribonuclease PH [Burkholderia ubonensis Bu]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M     R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   D  
Sbjct: 1   MTQSTSRPSGRRADELRKVTLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G V DG 
Sbjct: 117 IHIDCDVIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVG-VFDGT 175

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
             +   D+   ED     D  V  T +G
Sbjct: 176 PVL---DLDYPEDSRCDTDMNVVMTGAG 200


>gi|15672876|ref|NP_267050.1| general stress protein GSP13 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723825|gb|AAK04992.1|AE006323_7 general stress protein GSP13 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 143

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---------ARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFYLDNSSNKEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             V  +++D D+  GKI LS++ +++N
Sbjct: 66  QKVMAQIIDIDEYNGKISLSIRSLEKN 92


>gi|121602294|ref|YP_989553.1| 30S ribosomal protein S1 [Bartonella bacilliformis KC583]
 gi|120614471|gb|ABM45072.1| ribosomal protein S1 [Bartonella bacilliformis KC583]
          Length = 566

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E N+I +G V  + D+GAF+   G  DGL+H++
Sbjct: 170 GNIVVSRRTVLE-ESRAEQRSEIVQNLEENQIVEGVVKNITDYGAFIDLGGI-DGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV+  S+++  G T+ V+++  + D  +I L MK ++ +
Sbjct: 228 DMAWRRVSHPSEILTIGQTIKVQIIRINQDTHRISLGMKQLEND 271



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           SI++   V K   G V  + D+G FV      +GL+H+S++S T++      ++     V
Sbjct: 275 SISEKYPVGKKITGSVTNITDYGCFVEIEPGIEGLIHVSEMSWTKKNIHPGKLLSTSQEV 334

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            V +L+ D  + +I L +K V +N
Sbjct: 335 EVAVLEVDPSKRRISLGLKQVSEN 358


>gi|291572098|dbj|BAI94370.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
          Length = 398

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D DRG+I LS K ++   G
Sbjct: 254 DADRGRISLSTKQLEPEPG 272


>gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1]
 gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G+D  IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFAHLVAKGKLKANPMKGHVAAVSVGIL--GED--IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYTEDSAADTDMNVVMTEDG 195


>gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
 gi|81528161|sp|Q92HM4|RS1_RICCN RecName: Full=30S ribosomal protein S1
 gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
          Length = 568

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           +     V V ++ FD++ K I L +K +D N  + I
Sbjct: 248 LDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAI 283


>gi|52786716|ref|YP_092545.1| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|161760685|ref|YP_080129.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|319647246|ref|ZP_08001468.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
 gi|81609007|sp|Q65GG2|RNPH_BACLD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52349218|gb|AAU41852.1| Rph [Bacillus licheniformis ATCC 14580]
 gi|145903088|gb|AAU24491.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|317390593|gb|EFV71398.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R ++  +  +    GS L   G T+ I   ++    +++    L G  +
Sbjct: 1   MRYDGRKNNELRPVTMDLDFITHPEGSVLITVGGTKVICNASV----EDRVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+  A       L++ G    +PI+  +A  ++G+  D +  +IL
Sbjct: 117 DVIQADGGTRTASITGAFTAMALAVGRLVEKGALKEMPITDFLAATSVGI--DKEKGLIL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S + +   L+ A++G   +L + 
Sbjct: 175 -DLNYQEDSAAEVDMNVVMTGEGRFVELQGTGEEATFSRSELDGLLELAEKGIAELLEKQ 233

Query: 536 SKVLSESRLQL 546
            +VL +  L +
Sbjct: 234 KEVLGDVALSI 244


>gi|227552907|ref|ZP_03982956.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
 gi|227177961|gb|EEI58933.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
          Length = 316

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24]
 gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24]
          Length = 252

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R IS   G  ++  GS+L   G+T+ +   +L     E     L G  R
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASL----TEGVPRWLKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL +A               P+   +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  T SG
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSG 207


>gi|223993171|ref|XP_002286269.1| ATP dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220977584|gb|EED95910.1| ATP dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 1191

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 14/96 (14%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDV-VKEGDTVW 671
           ++ +I++G V +V+DFG  V F          G+VH++ ++  R+ K  D   + G +V+
Sbjct: 225 QLYQIFRGTVQRVLDFGIVVDFNVPGNSEKASGMVHLTHVTKNRIEKPKDAGFRPGQSVY 284

Query: 672 VKLLDFDDR--------GKIKLSMKVVDQNTGKPIV 699
           VKL+    R        G + LS+K VDQ++GK ++
Sbjct: 285 VKLISIGKRGASAGAGEGGLMLSLKDVDQSSGKDLM 320


>gi|293402216|ref|ZP_06646354.1| general stress protein 13 [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304323|gb|EFE45574.1| general stress protein 13 [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 117

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G +  +  +GAFV+     +GL+HIS++S   V      VK    V VK+LD D
Sbjct: 5   VGEVVEGVITGIKPYGAFVYLDNCHNGLIHISEISERFVRDVHTYVKINQRVKVKILDID 64

Query: 679 DRG-KIKLSMKVVDQNTGKPI 698
           + G   KLS+K V+    + +
Sbjct: 65  EDGTHFKLSLKAVEAKKARSM 85


>gi|291528539|emb|CBK94125.1| Transcriptional accessory protein [Eubacterium rectale M104/1]
          Length = 786

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFG FV     +DGLVHIS++    +    + V  GD V V+++  D  +
Sbjct: 645 VLKGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKK 704

Query: 681 GKIKLSMKV 689
            +I+L+MK+
Sbjct: 705 QRIQLTMKI 713


>gi|209523929|ref|ZP_03272481.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
 gi|209495601|gb|EDZ95904.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
          Length = 375

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D DRG+I LS K ++   G
Sbjct: 254 DADRGRISLSTKQLEPEPG 272


>gi|87300975|ref|ZP_01083817.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
 gi|87284846|gb|EAQ76798.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
          Length = 361

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 245 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHTVLNVNDQMKVMIIDL 303

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 304 DAERGRISLSTKALEPEPG 322


>gi|238923236|ref|YP_002936751.1| transcription accessory protein [Eubacterium rectale ATCC 33656]
 gi|238874910|gb|ACR74617.1| transcription accessory protein [Eubacterium rectale ATCC 33656]
          Length = 786

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFG FV     +DGLVHIS++    +    + V  GD V V+++  D  +
Sbjct: 645 VLKGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKK 704

Query: 681 GKIKLSMKV 689
            +I+L+MK+
Sbjct: 705 QRIQLTMKI 713


>gi|326406439|gb|ADZ63510.1| general stress protein GSP13 [Lactococcus lactis subsp. lactis
           CV56]
          Length = 143

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---------ARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFYLDNSSNKEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             V  +++D D+  GKI LS++ +++N
Sbjct: 66  QKVMAQIIDIDEYNGKISLSIRSLEKN 92


>gi|282859452|ref|ZP_06268557.1| 30S ribosomal protein S1 [Prevotella bivia JCVIHMP010]
 gi|282587680|gb|EFB92880.1| 30S ribosomal protein S1 [Prevotella bivia JCVIHMP010]
          Length = 589

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G F+   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQRKEIISHL---EKGQILEGTVKNITTYGVFIDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV   + + V +LDFD+  K I L +K
Sbjct: 253 HEVVTLDEKIKVVILDFDEEKKRIALGLK 281



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 302 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 362 KMSLGIK 368


>gi|163849851|ref|YP_001637894.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240137077|ref|YP_002961546.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
 gi|226736915|sp|A9VZR7|RNPH_METEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163661456|gb|ABY28823.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240007043|gb|ACS38269.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 22/231 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K G   + L
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYK-GQPVLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D + D       +F V G   GI  +Q   ++   ++   +  L+ AK G
Sbjct: 176 -DYAEDSAAETDANFVVTG-KGGIVEVQGTAEMEPFTDEQFLELLRLAKGG 224


>gi|212697109|ref|ZP_03305237.1| hypothetical protein ANHYDRO_01675 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675884|gb|EEB35491.1| hypothetical protein ANHYDRO_01675 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 695

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SI D+ E + + +G V  + +FG FV      DGLVHIS +S + +   +++V   D + 
Sbjct: 615 SIDDLKEGD-VLEGTVRNITEFGCFVDIGVGIDGLVHISNMSDKFIKDPNEIVTNSDIIK 673

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+++ D  R +I LSMK + +
Sbjct: 674 VKVIEIDKKRERIGLSMKNIKE 695


>gi|197286965|ref|YP_002152837.1| ribonuclease PH [Proteus mirabilis HI4320]
 gi|226736924|sp|B4F0W3|RNPH_PROMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194684452|emb|CAR46192.1| ribonuclease PH [Proteus mirabilis HI4320]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 23/198 (11%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ VR I+      +   GS L   GDT+ +   T+    +E     L G  +     
Sbjct: 6   RQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQGWVTA 61

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP AT   +   A   ++ G      RL  R++   +   A   +T+ +  ++ ++
Sbjct: 62  EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQA 121

Query: 433 DGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL+DA             P+   VA +++G+V DG     L D+  
Sbjct: 122 DGGTRTASISGACVALVDALNKMVTEGKLKKSPLKSMVAAVSVGIV-DGQP---LCDLEY 177

Query: 482 DEDHLGHMDFKVAGTDSG 499
            ED     D  V   D G
Sbjct: 178 VEDSAAETDMNVVMIDDG 195


>gi|297583709|ref|YP_003699489.1| ribonuclease PH [Bacillus selenitireducens MLS10]
 gi|297142166|gb|ADH98923.1| ribonuclease PH [Bacillus selenitireducens MLS10]
          Length = 261

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 22/198 (11%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +RDI    G ++   GS L   GDT+ I   ++    +++    L G  +     
Sbjct: 7   RLNHQLRDIDMIPGYIKHPEGSVLISFGDTKVICSASI----EDRVPPFLRGQGKGWVTA 62

Query: 377 HYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP AT       S  G  + R +   RL  RA+  V+        T+ +  ++ ++
Sbjct: 63  EYAMLPRATESRNIRESSKGKVTGRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQA 122

Query: 433 DGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+  A       LM+ G     P++  +A I++G+  DGD   IL D+  
Sbjct: 123 DGGTRTASITGAFTAVALAFENLMEEGKLEENPLTDFLAAISVGVASDGD---ILLDLDY 179

Query: 482 DEDHLGHMDFKVAGTDSG 499
            ED    +D  +  T +G
Sbjct: 180 SEDSTADVDMNIVMTGTG 197


>gi|118602599|ref|YP_903814.1| 30S ribosomal protein S1 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567538|gb|ABL02343.1| SSU ribosomal protein S1P [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 558

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  K  +G V  + D+GAF+   G  DGL+HI+ +S +RV   S+ +  GD + VK+L++
Sbjct: 190 EEGKEIEGLVKNLADYGAFIDLGGV-DGLLHITDISWQRVNHPSEKLTIGDKIIVKVLNY 248

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D+ KI++S+  + Q T  P
Sbjct: 249 -DKEKIRVSLG-LKQLTASP 266



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +I+D   + K   G V  + D+GAFV      +GLVH+S++  T   A+ S +VK G  V
Sbjct: 269 NISDRLPIGKKVPGTVSNLTDYGAFVRIEEGVEGLVHVSEMDWTNANARPSKIVKLGQEV 328

Query: 671 WVKLLDF-DDRGKIKLSMKVVDQN 693
            V +LD  + + +I LSMK   +N
Sbjct: 329 EVVVLDVQESKHRISLSMKQAQEN 352


>gi|313893418|ref|ZP_07826990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442059|gb|EFR60479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 632

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|332654043|ref|ZP_08419787.1| S1 RNA binding domain protein [Ruminococcaceae bacterium D16]
 gi|332517129|gb|EGJ46734.1| S1 RNA binding domain protein [Ruminococcaceae bacterium D16]
          Length = 720

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V+DFG FV     +DGLVHIS+L   RV   S+++  GD V V +L  D+ + +
Sbjct: 651 QGTVRNVIDFGVFVDIGVHQDGLVHISKLP-RRVKHPSELLSVGDVVTVWVLSVDEGKKR 709

Query: 683 IKLSMK 688
           I L+MK
Sbjct: 710 ISLTMK 715


>gi|291523999|emb|CBK89586.1| Transcriptional accessory protein [Eubacterium rectale DSM 17629]
          Length = 786

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFG FV     +DGLVHIS++    +    + V  GD V V+++  D  +
Sbjct: 645 VLKGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKK 704

Query: 681 GKIKLSMKV 689
            +I+L+MK+
Sbjct: 705 QRIQLTMKI 713


>gi|228470785|ref|ZP_04055633.1| 30S ribosomal protein S1 [Porphyromonas uenonis 60-3]
 gi|228307458|gb|EEK16463.1| 30S ribosomal protein S1 [Porphyromonas uenonis 60-3]
          Length = 598

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQV++     +  +GAFV   G  DGL+HI+ LS  R+   S+VV   + + V 
Sbjct: 210 ISKLEKGQVLEGVVKGITSYGAFVDLGGV-DGLIHITDLSWGRIGDPSEVVSIDEKINVV 268

Query: 674 LLDFD-DRGKIKLSMK 688
           +LDFD ++ +I L +K
Sbjct: 269 ILDFDEEKTRIALGLK 284



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++ +V    ++G FV      DGL+HIS LS T +V   ++ VK G  + V++L+ D   
Sbjct: 391 HEARVRNFTNYGVFVELDEGIDGLIHISDLSWTRKVKHPNEFVKVGQMIEVQVLEIDKEN 450

Query: 682 -KIKLSMKVVDQN 693
            ++ L  K V +N
Sbjct: 451 RRLSLGHKQVTEN 463



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD----VVKEGDTVWVKLLDF 677
           I  G+VV + D+GAFV      +GL+H+S++S  +  +++     V +E D V V +LD 
Sbjct: 303 IVHGRVVVITDYGAFVEVIPGVEGLIHVSEMSWTQHLRSAQEFLTVGQEVDAV-VLMLDR 361

Query: 678 DDRGKIKLSMK 688
           +DR K+ L +K
Sbjct: 362 EDR-KMSLGLK 371


>gi|222084657|ref|YP_002543186.1| ribonuclease PH [Agrobacterium radiobacter K84]
 gi|254808098|sp|B9J7T9|RNPH_AGRRK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221722105|gb|ACM25261.1| ribonuclease PH [Agrobacterium radiobacter K84]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +E+    L  + +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +  A S ++ G      RL  R++  V+         + I  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWIALYDC 140


>gi|33863935|ref|NP_895495.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
 gi|33635519|emb|CAE21843.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
           MIT 9313]
          Length = 367

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 250 EVGEVVIGAVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDL 308

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 309 DAERGRISLSTKALEPEPG 327


>gi|315170973|gb|EFU14990.1| ribonuclease PH [Enterococcus faecalis TX1342]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAINHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|238019394|ref|ZP_04599820.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
 gi|237864093|gb|EEP65383.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
          Length = 632

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|198284080|ref|YP_002220401.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667606|ref|YP_002426735.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248601|gb|ACH84194.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519819|gb|ACK80405.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 242

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 28/229 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ +   ++    +E+    L G  +
Sbjct: 2   IRPSGRNADALRPVQVTRNFTKHAEGSVLIACGDTKVLCTASV----EEKVPPFLRGAGK 57

Query: 372 NDFMMHYNFLPCATGE-VSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E V+R  A  R   R     RL  R++   +   A    T+ +  
Sbjct: 58  GWVTAEYSMLPRATRERVARESAKGRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+ DA             P+   VA +++G V  G   +  
Sbjct: 118 DVLQADGGTRTASITGACLAVADAVQHLRTVGQLRNNPLRDWVAAVSVG-VYQGQAVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
            D+   ED    +D  V  T +G       +++ G +E  +  A Q A+
Sbjct: 175 -DLDYAEDSNADVDMNVVMTGAGAF-----VEVQGTAEGAVFSAEQMAE 217


>gi|91784888|ref|YP_560094.1| ribonuclease PH [Burkholderia xenovorans LB400]
 gi|122970210|sp|Q13V47|RNPH_BURXL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91688842|gb|ABE32042.1| RNAse PH [Burkholderia xenovorans LB400]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTNNTQRPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|186682777|ref|YP_001865973.1| 30S ribosomal protein S1 [Nostoc punctiforme PCC 73102]
 gi|186465229|gb|ACC81030.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
          Length = 375

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|332973007|gb|EGK10946.1| 30S ribosomal protein S1 [Psychrobacter sp. 1501(2011)]
          Length = 560

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++  + +  EV  I K     + D+GAFV   G  DGL+HI+ ++  R+  
Sbjct: 177 AENSAEREELLNKLEEGIEVEGIVK----NLTDYGAFVDLGGI-DGLLHITDMAWRRIKH 231

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S+VV+ G  + VK+L FD +R ++ L +K
Sbjct: 232 PSEVVEVGQDLKVKVLKFDRERNRVSLGLK 261



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +LD 
Sbjct: 277 VGSIVKARVTNLTDYGCFAEISDGIEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMILDI 336

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 337 DEERRRISLGIK 348


>gi|311069638|ref|YP_003974561.1| general stress protein 13 [Bacillus atrophaeus 1942]
 gi|310870155|gb|ADP33630.1| general stress protein 13 [Bacillus atrophaeus 1942]
          Length = 130

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQVKVLSV 65

Query: 678 D-DRGKIKLSMKVV 690
           D ++GKI LS++  
Sbjct: 66  DEEKGKISLSIRAT 79


>gi|241667467|ref|ZP_04755045.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876014|ref|ZP_05248724.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842035|gb|EET20449.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 556

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD ++
Sbjct: 194 VLQGIVKNITDFGAFIDLGGV-DGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEK 252

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 253 QRISLGIK 260



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 618 EVNKIYK------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           E  K YK      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD V 
Sbjct: 356 EFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDDVE 415

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             L+  + D  +I LSMK + ++  K  +
Sbjct: 416 AVLVSVNTDLERIALSMKQLSEDPFKNFI 444



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + KG V KV D GA V        DG + IS++S E      D + EG  V  ++++ D 
Sbjct: 452 LVKGNVTKVQDNGAVVMLDADNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDA 511

Query: 680 RGK-IKLSMKVVDQNT 694
           + + I LS+K VD++ 
Sbjct: 512 KKRSIALSIKAVDEDN 527


>gi|170693638|ref|ZP_02884796.1| ribonuclease PH [Burkholderia graminis C4D1M]
 gi|170141420|gb|EDT09590.1| ribonuclease PH [Burkholderia graminis C4D1M]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 82/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR +  +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTDTTQRPSGRLAHQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ETVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  DA             PIS  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVSKLLAAGRIESSPISDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|148653385|ref|YP_001280478.1| 30S ribosomal protein S1 [Psychrobacter sp. PRwf-1]
 gi|148572469|gb|ABQ94528.1| SSU ribosomal protein S1P [Psychrobacter sp. PRwf-1]
          Length = 559

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 601 AEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A RE ++  + +  EV  I K     + D+GAFV   G  DGL+HI+ ++  R+  
Sbjct: 177 AENSAEREELLNKLEEGIEVEGIVK----NLTDYGAFVDLGGI-DGLLHITDMAWRRIKH 231

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S+VV+ G  + VK+L FD +R ++ L +K
Sbjct: 232 PSEVVEVGQDLKVKVLKFDRERNRVSLGLK 261



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +LD 
Sbjct: 277 VGSIVKARVTNLTDYGCFAEISDGIEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMILDI 336

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 337 DEERRRISLGIK 348


>gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279]
 gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 30/204 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R ++ ++G +    GS+L   G T+ +V V+L T    ++V    G    
Sbjct: 3   RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSL-TDGVPRHVSGREGW--- 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR------RAIHPVLPQTAQFPYTLRIV 426
             M  YN LP +T E        R++I  GR A       RA    L  +     T+ I 
Sbjct: 59  -LMAEYNLLPRSTKERKER---ERQKIS-GRTAEIQRFLGRAFRAALDLSLLPNKTVVID 113

Query: 427 SEITESDGSSSMATVCGSSLAL---MDAGV--------PISKPVAGIAMGLVKDGDDFII 475
           +++ ++DG + +A++ G   AL   MD  V        P+++  A +++G +   DD ++
Sbjct: 114 ADVIQADGGTRVASLLGGYAALHMAMDRLVNQGKLDEWPLTE-FAAVSVGWMS--DDSLL 170

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D++  ED     D  V  T SG
Sbjct: 171 L-DLTQIEDENAWADLTVVATQSG 193


>gi|190344682|gb|EDK36410.2| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLSTE--RVAKTSDVVKEGDTVWV 672
           EV +I  G V  ++ +GAF+     +    GL H+SQL+    +++  S VVK    V+V
Sbjct: 161 EVGEIVTGAVSNIVPYGAFIRLQSGKKSVVGLCHVSQLTFTGTKISSPSQVVKVDQQVFV 220

Query: 673 KLLDFDDRGK---IKLSMKVVDQNTG 695
           K+   + +G+     LSM+ +DQ+TG
Sbjct: 221 KITKIETQGRRERFSLSMRGIDQDTG 246


>gi|315150398|gb|EFT94414.1| ribonuclease PH [Enterococcus faecalis TX0012]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|315144635|gb|EFT88651.1| ribonuclease PH [Enterococcus faecalis TX2141]
 gi|315160934|gb|EFU04951.1| ribonuclease PH [Enterococcus faecalis TX0645]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|304436633|ref|ZP_07396602.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370329|gb|EFM23985.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 376

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  GD V VK+L  D  R +
Sbjct: 283 EGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTGDVVVVKVLRIDTKRKR 342

Query: 683 IKLSM 687
           I LS+
Sbjct: 343 ISLSI 347



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLL 675
           E  +I +G V +++D+GAF+   G  DGL HIS L+  RV   S+V++ G    V+VK +
Sbjct: 192 EPEQIVRGTVKRLVDYGAFIDIGGV-DGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSV 250

Query: 676 DFDDRGKIKLSMK 688
           D D + +I LS+K
Sbjct: 251 DRDAK-RISLSVK 262


>gi|262038294|ref|ZP_06011683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Leptotrichia
           goodfellowii F0264]
 gi|261747686|gb|EEY35136.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Leptotrichia
           goodfellowii F0264]
          Length = 517

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G+V KV+DFG  V+  G   G +HIS+L     A      KEGD +  K++D D+  K +
Sbjct: 178 GEVKKVLDFGIIVN-LGVTTGFIHISELGWHHGADALKNYKEGDKIEAKVIDIDNEKKSV 236

Query: 684 KLSMKVVDQN 693
           KLS+K + +N
Sbjct: 237 KLSVKQLSEN 246



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 7/108 (6%)

Query: 585 VNIDDDG-TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           ++ID++  +VK++   L+E         S+ +  ++  I +  V +V +FG  +      
Sbjct: 227 IDIDNEKKSVKLSVKQLSE-----NPWNSVKEKYKIGDILEKDVSEVFEFGLLIELEKDI 281

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +GL+H+S L+  RV+  +   K+GD +  K++ F+D + ++ LS K +
Sbjct: 282 EGLLHVSDLAYRRVSNLNSKYKKGDVIKFKIIGFNDEKNRLSLSAKAL 329


>gi|171057652|ref|YP_001790001.1| 30S ribosomal protein S1 [Leptothrix cholodnii SP-6]
 gi|170775097|gb|ACB33236.1| ribosomal protein S1 [Leptothrix cholodnii SP-6]
          Length = 562

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +I+ G+V  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 274 PSGTRIF-GKVTNIADYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKIVALGDEVEVMVL 332

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK   QN
Sbjct: 333 EIDEDKRRISLGMKQCKQN 351



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++ ++
Sbjct: 196 GVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTVGQELTAKVLKFDAEKNRV 254

Query: 684 KLSMK 688
            L +K
Sbjct: 255 SLGLK 259



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D +R 
Sbjct: 367 KGPVKSITDFGVFVGLAAGIDGLVHLSDLSWNETGEAAVRNFKKGQDVEAIVLGIDVERE 426

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 427 RISLGIKQLDTD 438


>gi|291301239|ref|YP_003512517.1| RNA binding S1 domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570459|gb|ADD43424.1| RNA binding S1 domain protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 507

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G    VK++D D
Sbjct: 301 IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVEVPEQVVEVGSDAMVKVIDID 360

Query: 679 -DRGKIKLSMK 688
            DR +I LS+K
Sbjct: 361 LDRRRISLSLK 371



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 6/44 (13%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERV 657
           +NK+ KGQV K     +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 211 LNKLAKGQVRKGVVSSIVNFGAFVDLGGV-DGLVHVSELSWKHI 253


>gi|224476055|ref|YP_002633661.1| hypothetical protein Sca_0562 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420662|emb|CAL27476.1| hypothetical protein with S1 RNA binding domain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 128

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  K +V  +  +GAFV      +GL+HIS++  + V   S  + EG  V  K+L  
Sbjct: 6   QIGQHVKVKVAGIQPYGAFVETPDNTEGLIHISEIMNDYVHNLSRFLSEGQIVRAKILSI 65

Query: 678 DDRGKIKLSMK 688
           D+ GK+ LS+K
Sbjct: 66  DEEGKLNLSLK 76


>gi|126738497|ref|ZP_01754202.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
 gi|126720296|gb|EBA17002.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G  +   GS L   G+T  +   TL    +E+    + G+  
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSCLIKMGETHVLCTATL----EERVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R  A S ++ G      RL  RA+   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A + G  +A       LM AG     P+  PV+ I+ G+
Sbjct: 117 DVLQADGGTRCAAITGGWVALRLAVNKLMKAGDVTIDPLMDPVSAISCGI 166


>gi|311031694|ref|ZP_07709784.1| general stress protein 13 [Bacillus sp. m3-13]
          Length = 135

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++D  E+  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V V
Sbjct: 1   MSDKFEIGSVLTGKVTGIQPYGAFVALDEETQGLVHISEITHGYVKDVNEHLKMGDEVQV 60

Query: 673 KLLDFDDR-GKIKLSMK 688
           K+L  D++  KI LS+K
Sbjct: 61  KVLSVDEKSNKISLSIK 77


>gi|312880474|ref|ZP_07740274.1| Tex-like protein [Aminomonas paucivorans DSM 12260]
 gi|310783765|gb|EFQ24163.1| Tex-like protein [Aminomonas paucivorans DSM 12260]
          Length = 715

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+S LS + V   S+ V+ G  V V +L  D  R ++
Sbjct: 646 GVVTNVTAFGAFVDVGVHQDGLVHLSHLSDKYVKDPSEAVRPGQRVSVTVLGVDLPRRRL 705

Query: 684 KLSMK 688
            LSMK
Sbjct: 706 SLSMK 710


>gi|326316779|ref|YP_004234451.1| 30S ribosomal protein S1 [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373615|gb|ADX45884.1| ribosomal protein S1 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 561

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 194 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PSGTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPSKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|257085617|ref|ZP_05579978.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
 gi|256993647|gb|EEU80949.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|242242245|ref|ZP_04796690.1| RNA binding protein [Staphylococcus epidermidis W23144]
 gi|242234304|gb|EES36616.1| RNA binding protein [Staphylococcus epidermidis W23144]
          Length = 126

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSI 65

Query: 678 DDRGKIKLSMK 688
           DD GK+ LS+K
Sbjct: 66  DDEGKLNLSLK 76


>gi|269797892|ref|YP_003311792.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
           DSM 2008]
 gi|269094521|gb|ACZ24512.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
           DSM 2008]
          Length = 632

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|116075859|ref|ZP_01473118.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
 gi|116067174|gb|EAU72929.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
          Length = 359

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 243 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDL 301

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 302 DAERGRISLSTKALEPEPG 320


>gi|160900156|ref|YP_001565738.1| 30S ribosomal protein S1 [Delftia acidovorans SPH-1]
 gi|160365740|gb|ABX37353.1| ribosomal protein S1 [Delftia acidovorans SPH-1]
          Length = 561

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 194 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    + +V  GD V V +L
Sbjct: 275 PSSTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPTKLVTLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D +R 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVERE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 428 RISLGIKQLDSD 439


>gi|282848928|ref|ZP_06258318.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           parvula ATCC 17745]
 gi|282581433|gb|EFB86826.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           parvula ATCC 17745]
          Length = 632

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPE----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + + +S  DV E    V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D
Sbjct: 533 KALSKSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVED 592

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +  G  V VK++  + D  K+ L++
Sbjct: 593 YLNRGQEVEVKIISLNKDEKKLGLAL 618


>gi|120611941|ref|YP_971619.1| 30S ribosomal protein S1 [Acidovorax citrulli AAC00-1]
 gi|120590405|gb|ABM33845.1| SSU ribosomal protein S1P [Acidovorax citrulli AAC00-1]
          Length = 561

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 194 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PSGTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPSKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|302381901|ref|YP_003817724.1| ribosomal protein S1 [Brevundimonas subvibrioides ATCC 15264]
 gi|302192529|gb|ADL00101.1| ribosomal protein S1 [Brevundimonas subvibrioides ATCC 15264]
          Length = 567

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++  G V  + D+GAFV   G  DGL+H++ +S +RV+  S V+  GDTV V+++  + 
Sbjct: 199 GEVRDGVVKNITDYGAFVDLGGI-DGLLHVTDMSWKRVSHPSQVLAVGDTVQVQIVKINP 257

Query: 679 DRGKIKLSMK 688
           D  +I L MK
Sbjct: 258 DTQRISLGMK 267


>gi|34540994|ref|NP_905473.1| 30S ribosomal protein S1 [Porphyromonas gingivalis W83]
 gi|188994952|ref|YP_001929204.1| 30S ribosomal protein S1 [Porphyromonas gingivalis ATCC 33277]
 gi|4929270|gb|AAD33925.1|AF143945_1 heme uptake protein A and B [Porphyromonas gingivalis]
 gi|34397309|gb|AAQ66372.1| ribosomal protein S1 [Porphyromonas gingivalis W83]
 gi|188594632|dbj|BAG33607.1| 30S ribosomal protein S1 [Porphyromonas gingivalis ATCC 33277]
          Length = 599

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           + K+ KGQV++     +  +G F+   G  DGL+HI+ LS  RVA   ++V+    + V 
Sbjct: 208 IGKLEKGQVLEGIVKNITSYGVFIDLGGV-DGLIHITDLSWGRVAHPEEIVQLDQKINVV 266

Query: 674 LLDFD-DRGKIKLSMK 688
           +LDFD DR +I L +K
Sbjct: 267 ILDFDEDRKRIALGLK 282



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S T+ +    D +  GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFVEIAQGVEGLIHVSEMSWTQHLRSAQDFLHVGDEVEAVILTLDREER 362

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 363 KMSLGLK 369


>gi|29375698|ref|NP_814852.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256962282|ref|ZP_05566453.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257418951|ref|ZP_05595945.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|293383311|ref|ZP_06629226.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|293387532|ref|ZP_06632081.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|312905818|ref|ZP_07764838.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|312909127|ref|ZP_07767986.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|29343159|gb|AAO80922.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256952778|gb|EEU69410.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257160779|gb|EEU90739.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|291079334|gb|EFE16698.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|291083042|gb|EFE20005.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|310628157|gb|EFQ11440.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|311290551|gb|EFQ69107.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|315174641|gb|EFU18658.1| ribonuclease PH [Enterococcus faecalis TX1346]
 gi|315573714|gb|EFU85905.1| ribonuclease PH [Enterococcus faecalis TX0309B]
 gi|315582671|gb|EFU94862.1| ribonuclease PH [Enterococcus faecalis TX0309A]
 gi|327534753|gb|AEA93587.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis OG1RF]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|282895318|ref|ZP_06303520.1| RNA binding S1 [Raphidiopsis brookii D9]
 gi|281199624|gb|EFA74484.1| RNA binding S1 [Raphidiopsis brookii D9]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|240102866|ref|YP_002959175.1| translation initiation factor IF-2 subunit alpha [Thermococcus
           gammatolerans EJ3]
 gi|254172226|ref|ZP_04878902.1| translation initiation factor 2 alpha subunit [Thermococcus sp.
           AM4]
 gi|259491469|sp|C5A4Z9|IF2A_THEGJ RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|214034122|gb|EEB74948.1| translation initiation factor 2 alpha subunit [Thermococcus sp.
           AM4]
 gi|239910420|gb|ACS33311.1| Translation initiation factor 2 alpha subunit (eIF2A) [Thermococcus
           gammatolerans EJ3]
          Length = 273

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVK 665
           M R   + PE  +     V  +  +GAF+    + G ++G +HIS+++   V    D VK
Sbjct: 1   MPRKAREYPEEGEFVVATVKNIHPYGAFLILDEYPG-KEGFMHISEVAPTWVKNIRDYVK 59

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           EG  V VK++  D ++G I LS+K V+Q   K
Sbjct: 60  EGQKVVVKVIRVDPEKGHIDLSLKRVNQQQRK 91


>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
           [Tribolium castaneum]
          Length = 249

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 24/237 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R I  ++G+     GS+   +G T+ +  V  G  +        +  Q 
Sbjct: 13  LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAV-YGPHQV-----GFAKAQH 66

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-----FPYT-LRI 425
           +  +++  F    +  V   G   +R  G  +    +IH     TA      +P+T + +
Sbjct: 67  DSAVVNCQF----SMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDV 122

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+  +DG    A V  ++LAL+DAG+P+ + V      L    ++ + L D+S  E+ 
Sbjct: 123 YVEVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTASL---ANNDVPLLDVSHQEEI 179

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +G     VA        + M+M     S+   V  LQ+     L    ++  +L E+
Sbjct: 180 IGGPTLTVAALPMSGKIVLMEM-----SQRFHVDHLQKVLDKALQGCKDIKSILDEA 231


>gi|313896281|ref|ZP_07829834.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975080|gb|EFR40542.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 389

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  GD V VK+L  D  R +
Sbjct: 283 EGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTGDIVTVKVLRIDTKRKR 342

Query: 683 IKLSM 687
           I LS+
Sbjct: 343 ISLSI 347



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLL 675
           E  +I +G V +++D+GAF+   G  DGL HIS L+  RV   S+V++ G    V+VK +
Sbjct: 192 EPEQIVRGTVKRLVDYGAFIDIGGV-DGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSV 250

Query: 676 DFDDRGKIKLSMK 688
           D D + +I LS+K
Sbjct: 251 DRDAK-RISLSVK 262


>gi|168011566|ref|XP_001758474.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690509|gb|EDQ76876.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  V  +GAF+   G   GL+HISQ+S +R+     V+  GD + V +L  D
Sbjct: 265 IGSVVVGTVQTVKPYGAFIDIGGV-SGLLHISQISHDRLTTVETVLSPGDKLKVMILSQD 323

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG+I LS K ++   G
Sbjct: 324 KDRGRISLSTKKLEPTPG 341


>gi|119509035|ref|ZP_01628186.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
 gi|119466201|gb|EAW47087.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
          Length = 383

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|52081633|ref|YP_080424.1| general stress protein 13 [Bacillus licheniformis ATCC 14580]
 gi|52787016|ref|YP_092845.1| general stress protein 13 [Bacillus licheniformis ATCC 14580]
 gi|319647549|ref|ZP_08001769.1| YugI protein [Bacillus sp. BT1B_CT2]
 gi|52004844|gb|AAU24786.1| putative polyribonucleotide nucleotidyltransferase YugI [Bacillus
           licheniformis ATCC 14580]
 gi|52349518|gb|AAU42152.1| YugI [Bacillus licheniformis ATCC 14580]
 gi|317390397|gb|EFV71204.1| YugI protein [Bacillus sp. BT1B_CT2]
          Length = 129

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLAVGDEVQVKVLSV 65

Query: 678 D-DRGKIKLSMKVV 690
           D ++GKI LS++  
Sbjct: 66  DEEKGKISLSIRAT 79


>gi|16080191|ref|NP_391017.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311081|ref|ZP_03592928.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315408|ref|ZP_03597213.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320324|ref|ZP_03601618.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324608|ref|ZP_03605902.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312683|ref|YP_004204970.1| general stress protein 13 [Bacillus subtilis BSn5]
 gi|3123231|sp|P80870|GS13_BACSU RecName: Full=General stress protein 13; Short=GSP13
 gi|237640365|pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis
 gi|1934792|emb|CAB07921.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2635635|emb|CAB15128.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485587|dbj|BAI86662.1| general stress protein 13 [Bacillus subtilis subsp. natto BEST195]
 gi|320018957|gb|ADV93943.1| general stress protein 13 [Bacillus subtilis BSn5]
          Length = 130

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAV 65

Query: 678 D-DRGKIKLSMKVV 690
           D ++GKI LS++  
Sbjct: 66  DEEKGKISLSIRAT 79


>gi|85708921|ref|ZP_01039987.1| 30S ribosomal protein S1 [Erythrobacter sp. NAP1]
 gi|85690455|gb|EAQ30458.1| 30S ribosomal protein S1 [Erythrobacter sp. NAP1]
          Length = 569

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ +GQV+      + D+GAFV   G  DGL+H++ +S +RV   S+V+  GDTV V+
Sbjct: 195 IDKLAEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDMSYKRVNHPSEVIAIGDTVTVQ 253

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           ++  + +  +I L MK ++ +
Sbjct: 254 IVRINAETQRISLGMKQLESD 274



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN    GQV  + ++GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 285 VNMKLTGQVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEV 344

Query: 678 D-DRGKIKLSMKVVDQN 693
           D ++ +I L +K   +N
Sbjct: 345 DSEKRRISLGLKQAQRN 361


>gi|115350911|ref|YP_772750.1| ribonuclease PH [Burkholderia ambifaria AMMD]
 gi|122323780|sp|Q0BHF7|RNPH_BURCM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115280899|gb|ABI86416.1| RNAse PH [Burkholderia ambifaria AMMD]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   D   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+ +     + L 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVYEG----VPLL 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T +G
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAG 200


>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870517|gb|EAT34742.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870766|gb|EAT34991.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
          Length = 245

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 12/207 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+ +R+DGR +  +R I  ++G+  +  GS+   +G+T+ +  V        Q    
Sbjct: 3   LLSDEGLRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVY----GPHQAPAK 58

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
            S  +       Y+    +TGE  R     R+        ++A+   + +T  +P + + 
Sbjct: 59  KSSHEEVIVNCQYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAI-KTELYPKSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+  +DG +  A+V  ++LAL+DAG+ + + V      L       I L D+S  E+
Sbjct: 118 VYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGK----IPLMDVSNLEE 173

Query: 485 HLGHMDFKVAGTDSG--ITAMQMDMKI 509
             G     VA   S   I  M+M  + 
Sbjct: 174 MSGGPTLTVASLPSSGKIAFMEMSQRF 200


>gi|262066813|ref|ZP_06026425.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379479|gb|EFE86997.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 827

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V VK+ D   +DR 
Sbjct: 567 GVVTKVLPYGAFVEIKAGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVKITDLHPEDR- 625

Query: 682 KIKLSMK 688
           K+KL +K
Sbjct: 626 KLKLGIK 632



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKL 685
           V +V++FG  V    A  G +HIS++S +R+ K +D  K GD V   ++  D+  K +KL
Sbjct: 484 VTEVLEFGLAVD-INALKGFIHISEVSWKRLDKLADTYKVGDKVKAVVVSLDEAKKNVKL 542

Query: 686 SMK 688
           S+K
Sbjct: 543 SIK 545


>gi|189425094|ref|YP_001952271.1| ribonuclease PH [Geobacter lovleyi SZ]
 gi|226736912|sp|B3E3D2|RNPH_GEOLS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189421353|gb|ACD95751.1| ribonuclease PH [Geobacter lovleyi SZ]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 23/199 (11%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR    +R I+     ++   G+ L   GDT+ I   ++    +E     L G       
Sbjct: 5   GRGLSDLRPITMTRHFIKHPEGAVLVEFGDTRVICTASV----EESVPPFLRGKGTGWVT 60

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y+ LP AT   S   A   ++ G      RL  R++  V   T     T+ +  ++ +
Sbjct: 61  AEYSMLPRATHTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQ 120

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +AL+DA           G P+ + VA +++G+V DG   +   D+ 
Sbjct: 121 ADGGTRTASITGAYVALVDAVSALLVQGKITGNPLKEAVAAVSVGIV-DGQAVL---DLD 176

Query: 481 GDEDHLGHMDFKVAGTDSG 499
             ED    +D     T SG
Sbjct: 177 YQEDSSAEVDMNFVMTSSG 195


>gi|312877642|ref|ZP_07737599.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795589|gb|EFR11961.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
          Length = 258

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S       L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQ 232

Query: 536 SKVLSE 541
            +VL E
Sbjct: 233 KEVLGE 238


>gi|307565521|ref|ZP_07628002.1| 30S ribosomal protein S1 [Prevotella amnii CRIS 21A-A]
 gi|307345775|gb|EFN91131.1| 30S ribosomal protein S1 [Prevotella amnii CRIS 21A-A]
          Length = 593

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G F+   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQRKEIISHL---EKGQILEGTVKNITTYGVFIDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV   + + V +LDFD+  K I L +K
Sbjct: 253 HEVVTLDEKIKVVILDFDEEKKRIALGLK 281



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 302 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 362 KMSLGIK 368


>gi|284052606|ref|ZP_06382816.1| 30S ribosomal protein S1 [Arthrospira platensis str. Paraca]
          Length = 316

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D+D    + S   A +E  R+M R      EV ++  G V  +  +GAF+   G   
Sbjct: 169 LEVDEDRNRLVLSHRRALVE--RKMNRL-----EVGEVVIGTVRGIKPYGAFIDIGGV-S 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+HIS++S + +     V    D V V ++D D DRG+I LS K ++   G
Sbjct: 221 GLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEPG 272


>gi|149928276|ref|ZP_01916519.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
 gi|149823005|gb|EDM82247.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
          Length = 567

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G+ +  K+L FD ++
Sbjct: 202 VVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLTVGEEIEAKVLKFDQEK 260

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 261 NRVSLGVK 268



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +      VV  GD V V +L+ D +R +
Sbjct: 290 GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNVDPKKVVTLGDEVEVMVLEIDEERRR 349

Query: 683 IKLSMK 688
           I L MK
Sbjct: 350 ISLGMK 355



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS     + +    K+GD V   +L  D +R +
Sbjct: 377 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWNETGEEAVRRFKKGDEVEALVLAIDTERER 436

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 437 ISLGIK---QLSGDPF 449


>gi|313892642|ref|ZP_07826229.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           microaerophilus UPII 345-E]
 gi|313119039|gb|EFR42244.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           microaerophilus UPII 345-E]
          Length = 629

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V+ + + +VVK++DFG  V       GL+HI++++ +   K +DV K GD + V+++  
Sbjct: 549 DVDDVVEAKVVKILDFGVIVEMNDGLTGLLHINEMTEDHNKKPADVCKIGDVLTVRIISI 608

Query: 678 D-DRGKIKLSM 687
           D +R +I  S+
Sbjct: 609 DEERKRISFSL 619



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V K+M +GAFV   G  +GL+HIS +S +++AK  DV+     + VK+  FD ++
Sbjct: 468 VLKGTVKKIMPYGAFVGINGV-EGLLHISDISWKKIAKVEDVLSPEQVIDVKIKSFDKEK 526

Query: 681 GKIKLSMK 688
            +I  + K
Sbjct: 527 QRISFTHK 534


>gi|299535538|ref|ZP_07048859.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
 gi|298728738|gb|EFI69292.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
          Length = 249

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 22/202 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+++ +R +      L    GS L   G+T+ I   T+    +++    L G  + 
Sbjct: 3   RFDGRNADGLRPVKIDSEYLLHPEGSVLIQVGNTKVICTATI----EDKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +     S  G  + R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+  A             P++  +A  ++G+V++    +   
Sbjct: 119 VIQADGGTRTASITGAFVAMTQAIAKFAEEKPFEKFPVTDFLAATSVGIVEEQGAIL--- 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED    +D  +  T +G
Sbjct: 176 DLNYVEDVAAAVDMNIVMTGAG 197


>gi|294012140|ref|YP_003545600.1| ribosomal protein S1 [Sphingobium japonicum UT26S]
 gi|292675470|dbj|BAI96988.1| ribosomal protein S1 [Sphingobium japonicum UT26S]
          Length = 570

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  + D+GAFV   G  DGL+H++ LS +R+   ++++  GDTV V+++  + D
Sbjct: 201 QIIEGVVKNITDYGAFVDLGGI-DGLLHVTDLSYKRINHPNEMINIGDTVRVQIIRINRD 259

Query: 680 RGKIKLSMKVVDQN 693
             +I L MK ++ +
Sbjct: 260 TQRISLGMKQLESD 273


>gi|317130070|ref|YP_004096352.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315475018|gb|ADU31621.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 137

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAF+     + GLVHIS ++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSIVEGKVTGIKPFGAFIALDDQKQGLVHISHIAHGFVKDINEHLSVGDEVKVKVLSI 65

Query: 678 DDR-GKIKLSMK 688
           D+  GKI LS++
Sbjct: 66  DEETGKISLSIR 77


>gi|32307552|gb|AAP79181.1| ribosomal protein rpS1 [Bigelowiella natans]
          Length = 419

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +GAF++  G  +GL+HISQ+S + V    DV+  G  + V ++  D  G++ LS K ++ 
Sbjct: 309 YGAFINLGGV-NGLLHISQISHDHVTSVKDVMDVGQKLKVMIMSRDQNGRVSLSTKRLEP 367

Query: 693 NTG 695
           N G
Sbjct: 368 NAG 370


>gi|296330798|ref|ZP_06873274.1| general stress protein 13 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675729|ref|YP_003867401.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152112|gb|EFG92985.1| general stress protein 13 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413973|gb|ADM39092.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 130

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAV 65

Query: 678 D-DRGKIKLSMKVV 690
           D ++GKI LS++  
Sbjct: 66  DEEKGKISLSIRAT 79


>gi|282901377|ref|ZP_06309302.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
 gi|281193656|gb|EFA68628.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
          Length = 343

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|238926860|ref|ZP_04658620.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531]
 gi|238885392|gb|EEQ49030.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531]
          Length = 370

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  GD V VK+L  D  R +
Sbjct: 278 EGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTGDIVIVKVLRIDTKRKR 337

Query: 683 IKLSM 687
           I LS+
Sbjct: 338 ISLSI 342



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLL 675
           E  +I +G V +++D+GAF+   G  DGL HIS L+  RV   S+V++ G    V+VK +
Sbjct: 187 EPEQIVRGTVKRLVDYGAFIDIGGV-DGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSV 245

Query: 676 DFDDRGKIKLSMK 688
           D D + +I LS+K
Sbjct: 246 DRDTK-RISLSVK 257


>gi|332366352|gb|EGJ44103.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355]
          Length = 120

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D+D+  GK
Sbjct: 8   KGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKIGQQVLVQVVDYDEFSGK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  SSLSMRTLEE 77


>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
 gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
          Length = 246

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 97/207 (46%), Gaps = 14/207 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V    +   +  +S
Sbjct: 7   LLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKQTES 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           +   Q       Y+    +T E        R+ +      ++A+   + ++  +P + + 
Sbjct: 67  IINCQ-------YSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAI-KSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISHFEE 175

Query: 485 HLGHMDFKVAG--TDSGITAMQMDMKI 509
             G     VA   T   I  ++M  + 
Sbjct: 176 VSGGPKLTVAALPTAEKIAFLEMSERF 202


>gi|157738252|ref|YP_001490936.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
 gi|157700106|gb|ABV68266.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
          Length = 550

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG++  + DFGAFV+  G  DGL+H  + S E  AK   + K+GD V V+++  
Sbjct: 367 KVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWESNAKCKSLFKKGDEVEVRIIKI 425

Query: 678 D-DRGKIKLSMK 688
           D ++  I LS+K
Sbjct: 426 DKEKENISLSIK 437


>gi|57866458|ref|YP_188133.1| general stress protein 13 [Staphylococcus epidermidis RP62A]
 gi|251810328|ref|ZP_04824801.1| RNA binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875550|ref|ZP_06284421.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|293368331|ref|ZP_06614959.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637116|gb|AAW53904.1| general stress protein 13 [Staphylococcus epidermidis RP62A]
 gi|251806210|gb|EES58867.1| RNA binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295577|gb|EFA88100.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|291317578|gb|EFE57996.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319401767|gb|EFV89975.1| S1 RNA binding domain protein [Staphylococcus epidermidis FRI909]
 gi|329726852|gb|EGG63312.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU144]
 gi|329736797|gb|EGG73062.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU028]
 gi|329737607|gb|EGG73853.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU045]
          Length = 126

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSI 65

Query: 678 DDRGKIKLSMK 688
           DD GK+ LS+K
Sbjct: 66  DDEGKLNLSLK 76


>gi|332978052|gb|EGK14790.1| tRNA nucleotidyltransferase [Desmospora sp. 8437]
          Length = 289

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 25/223 (11%)

Query: 294 VFEDI-QAKVVRTVMLDK-KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           VFE +   +  +T +L+  ++R+DGR    +R +      ++   GS L   GDT+ I  
Sbjct: 11  VFERVFPPQFHKTYILEGYELRVDGRQYNELRKVEMISDYIKHAEGSVLMCVGDTKVICT 70

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARR 407
            ++    +E+    L G+ +      Y+ LP AT       S  G    R +   RL  R
Sbjct: 71  ASV----EERVPPFLRGSGKGWVTAEYSMLPRATQSRTIRESSKGKVGGRTMEIQRLIGR 126

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPIS 456
           ++  V+        T+ +  ++ ++DG +  A++ G+ +A   A            VPI+
Sbjct: 127 SLRSVIQLDRLGERTIWLDCDVIQADGGTRTASITGAFVAAAQAIHGLVKSGALDSVPIT 186

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
             +A  ++G+V DG   +   D+  +ED    +D  V  T SG
Sbjct: 187 DFLAATSVGIV-DGQPCL---DLCYEEDSKAKVDMNVVMTGSG 225


>gi|329121291|ref|ZP_08249918.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           micraerophilus DSM 19965]
 gi|327470225|gb|EGF15688.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           micraerophilus DSM 19965]
          Length = 629

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V+ + + +VVK++DFG  V       GL+HI++++ +   K +DV K GD + V+++  
Sbjct: 549 DVDDVVEAKVVKILDFGVIVEMNDGLTGLLHINEMTEDHNKKPADVCKIGDVLTVRIISI 608

Query: 678 D-DRGKIKLSM 687
           D +R +I  S+
Sbjct: 609 DEERKRISFSL 619



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V K+M +GAFV   G  +GL+HIS +S +++AK  DV+     + VK+  FD ++
Sbjct: 468 VLKGTVKKIMPYGAFVGINGV-EGLLHISDISWKKIAKVEDVLSPEQVIDVKIKSFDKEK 526

Query: 681 GKIKLSMK 688
            +I  + K
Sbjct: 527 QRISFTHK 534


>gi|300932726|ref|ZP_07147982.1| ribonuclease PH [Corynebacterium resistens DSM 45100]
          Length = 250

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++         DS  G    
Sbjct: 11  RADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGW--- 67

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +T E  RM   S +    GR      L  RA+   +  T     T+ I 
Sbjct: 68  -LTAEYAMLPSSTHE--RMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAID 124

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D + 
Sbjct: 125 CDVLQADGGTRTAAITGAYVALADALKVLKEQGVVPGEPLLPPVAAVSVGII----DGVA 180

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  T+ G
Sbjct: 181 CLDLPYEEDSRADVDMNVVMTEQG 204


>gi|239616621|ref|YP_002939943.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505452|gb|ACR78939.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 572

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +++  +  E     +G +  + DFGAFV       GL+  S++S +   K  DV+  G
Sbjct: 183 EKVKAYFEALETGSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPSQKVHDVLNVG 242

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D V VK++D D ++ KI LS+K + ++
Sbjct: 243 DKVTVKVIDVDPEKKKISLSLKQLQED 269



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           SL+  EA  +   +I +  +V +I  G+VVKV+  GA V       G V +S++S   V 
Sbjct: 347 SLSYREALGDPWDNIEEKYKVGEIVDGKVVKVLPTGAIVELEEYVSGFVPVSEMSWNFVD 406

Query: 659 KTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           +  DVVKE   V  K+L  D    +++LS+K
Sbjct: 407 RVEDVVKESSEVKTKILSIDKENRRMRLSLK 437



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             P  E+   P  ++ +V+ +G KV   +         ID D   K  S SL +++   +
Sbjct: 221 LIPASEVSWDPSQKVHDVLNVGDKVTVKV---------IDVDPEKKKISLSLKQLQ--ED 269

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVVKEG 667
              ++ +   V  + +G V  ++ FG FV      +GLVHIS++    V +   ++++EG
Sbjct: 270 PWNTVEEKYPVGSVVEGVVKSIVPFGFFVMIEPGVEGLVHISEVFWGNVRRDLKELIREG 329

Query: 668 DTVWVKLLDFD 678
           D V VK+ D D
Sbjct: 330 DRVKVKIKDID 340


>gi|172039437|ref|YP_001805938.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
 gi|254808585|sp|B1WUL8|RNPH_CYAA5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171700891|gb|ACB53872.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 23/198 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQR 371
           R DGR    +R ++ ++   + + GS L   G+T+ +   ++     E+YV   L G+ +
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVLAQCGETKVLCTASI-----EEYVPRFLLGSGQ 59

Query: 372 NDFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT E  R  +   S R     RL  R++   +        ++ I  ++
Sbjct: 60  GWLTAEYRMLPSATQERQRRELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDV 119

Query: 430 TESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++D  +   ++ G  +AL  A             P+  PVA I++GL+ +G+ F+   D
Sbjct: 120 LQADAGTRTTSITGGYVALALALNKLIKKGELIQSPLRFPVAAISVGLI-EGEAFL---D 175

Query: 479 ISGDEDHLGHMDFKVAGT 496
           ++  ED    +DF V  T
Sbjct: 176 LNYPEDSKADIDFNVVMT 193


>gi|298387627|ref|ZP_06997178.1| S1 RNA binding domain protein [Bacteroides sp. 1_1_14]
 gi|298259483|gb|EFI02356.1| S1 RNA binding domain protein [Bacteroides sp. 1_1_14]
          Length = 710

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I  + E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +++V     
Sbjct: 627 VRTIAGLRE-GMILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPTEIVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           V V++++ D DR +I+LSM  V Q+
Sbjct: 686 VMVRVMNVDTDRKRIQLSMIGVQQD 710


>gi|146309763|ref|YP_001174837.1| ribonuclease PH [Enterobacter sp. 638]
 gi|166991085|sp|A4W506|RNPH_ENT38 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145316639|gb|ABP58786.1| RNAse PH [Enterobacter sp. 638]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVAFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLIAAGKLKKNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED +   D  V  T+ G
Sbjct: 173 CDLEYVEDSVAETDMNVVMTEDG 195


>gi|325847830|ref|ZP_08170052.1| S1 RNA binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480848|gb|EGC83901.1| S1 RNA binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 575

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + +FG FV      DGLVHIS +S + +   +++V   D + VK+++ D  R
Sbjct: 504 ILEGTVRNITEFGCFVDIGVGIDGLVHISNMSDKFIKDPNEIVTNSDIIKVKVIEIDKKR 563

Query: 681 GKIKLSMKVVDQ 692
            +I LSMK + +
Sbjct: 564 ERIGLSMKNIKE 575


>gi|320529136|ref|ZP_08030228.1| putative ribosomal protein S1 [Selenomonas artemidis F0399]
 gi|320138766|gb|EFW30656.1| putative ribosomal protein S1 [Selenomonas artemidis F0399]
          Length = 384

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  GD V VK+L  D  R +
Sbjct: 278 EGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTGDIVTVKVLRIDTKRKR 337

Query: 683 IKLSM 687
           I LS+
Sbjct: 338 ISLSI 342



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLL 675
           E  ++ +G V +++D+GAF+   G  DGL HIS L+  RV   S+V++ G    V+VK +
Sbjct: 187 EPEQVVRGTVKRLVDYGAFIDIGGV-DGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSV 245

Query: 676 DFDDRGKIKLSMK 688
           D D + +I LS+K
Sbjct: 246 DRDAK-RISLSVK 257


>gi|292669539|ref|ZP_06602965.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
 gi|292648748|gb|EFF66720.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
          Length = 248

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R ++ +R +  + G  +   GS+L   G T+ +   T+    +E+    L G+   
Sbjct: 3   RRDLRRTDQLRPVHIERGYQRYPAGSALVETGHTRVVCAATV----EERVPFFLKGSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E +   A   R+ G      RL  RA+  V+        T+ I  +
Sbjct: 59  WVTAEYAMLPGAGAERTAREAVRGRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV---------PISKPVAGIAMGLVKDGDDFIILSDI 479
           + ++DG +  A+V G+ +AL++A           P+   VA +++G+  +G   +   DI
Sbjct: 119 VLQADGGTRTASVTGAFVALVEACATFYTKHGIFPVRDYVAAVSVGIDTEGTPLL---DI 175

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
             +ED    +D  +  T +G
Sbjct: 176 CYEEDSSAMVDMNLVMTGAG 195


>gi|33571751|emb|CAE41252.1| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
          Length = 576

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 209 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 SRVSLGVK 275



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 290 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 349 EIDEDRRRISLGMKQCRQN 367



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D ++ 
Sbjct: 383 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTEKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|288924793|ref|ZP_06418730.1| ribosomal protein S1 [Prevotella buccae D17]
 gi|315607811|ref|ZP_07882804.1| 30S ribosomal protein S1 [Prevotella buccae ATCC 33574]
 gi|288338580|gb|EFC76929.1| ribosomal protein S1 [Prevotella buccae D17]
 gi|315250280|gb|EFU30276.1| 30S ribosomal protein S1 [Prevotella buccae ATCC 33574]
          Length = 592

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R   + I    E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQR---KEIISKLEKGQILEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV     + V +LDFD+  K I L +K
Sbjct: 253 HEVVALDQKINVVILDFDEEKKRIALGLK 281



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 302 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWETI 378


>gi|171315534|ref|ZP_02904770.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|172059924|ref|YP_001807576.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
 gi|226736891|sp|B1YUN3|RNPH_BURA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171099371|gb|EDT44109.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|171992441|gb|ACB63360.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
          Length = 246

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   D   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+ +     + L 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVYEG----VPLL 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T +G
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAG 200


>gi|154687250|ref|YP_001422411.1| general stress protein 13 [Bacillus amyloliquefaciens FZB42]
 gi|154353101|gb|ABS75180.1| YugI [Bacillus amyloliquefaciens FZB42]
          Length = 130

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQVKVLAV 65

Query: 678 D-DRGKIKLSMKVV 690
           D ++GKI LS++  
Sbjct: 66  DEEKGKISLSIRAT 79


>gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076]
 gi|122251374|sp|Q01NZ9|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R +    G L    GS+L   G+T  +   T+    ++     L  T +
Sbjct: 1   MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATI----EDTVPPFLRNTGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      EV++ G PS R     RL  R++   +  ++    TL I 
Sbjct: 57  GWVTAEYSMLPRATAKRTPREVTK-GRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A+  A             PI   VA  ++GLV      I 
Sbjct: 116 CDVIQADGGTRTASITGAFVAMALAFRQLIEYRALKANPIRDYVAATSVGLVGG----IP 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+  +ED    +D  V  T  G
Sbjct: 172 MLDLCYEEDSQADVDMNVVMTGGG 195


>gi|21282566|ref|NP_645654.1| hypothetical protein MW0837 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483115|ref|YP_040339.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49485731|ref|YP_042952.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651646|ref|YP_185827.1| general stress protein 13 [Staphylococcus aureus subsp. aureus COL]
 gi|82750570|ref|YP_416311.1| hypothetical protein SAB0822 [Staphylococcus aureus RF122]
 gi|148267389|ref|YP_001246332.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393442|ref|YP_001316117.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221037|ref|YP_001331859.1| hypothetical protein NWMN_0825 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|221140423|ref|ZP_03564916.1| hypothetical protein SauraJ_02161 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253316805|ref|ZP_04840018.1| hypothetical protein SauraC_11790 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732690|ref|ZP_04866855.1| RNA binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005745|ref|ZP_05144346.2| hypothetical protein SauraM_04730 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425004|ref|ZP_05601431.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427670|ref|ZP_05604069.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430305|ref|ZP_05606688.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433002|ref|ZP_05609362.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435906|ref|ZP_05611954.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|257795310|ref|ZP_05644289.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9781]
 gi|258406959|ref|ZP_05680112.1| S1 RNA-binding protein [Staphylococcus aureus A9763]
 gi|258421927|ref|ZP_05684848.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258424358|ref|ZP_05687238.1| general stress protein 13 [Staphylococcus aureus A9635]
 gi|258435324|ref|ZP_05689063.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258441536|ref|ZP_05690896.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8115]
 gi|258447235|ref|ZP_05695384.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6300]
 gi|258449995|ref|ZP_05698093.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|258452093|ref|ZP_05700109.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|258455508|ref|ZP_05703467.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|269202570|ref|YP_003281839.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893982|ref|ZP_06302213.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|282903492|ref|ZP_06311383.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905270|ref|ZP_06313127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908250|ref|ZP_06316081.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910531|ref|ZP_06318335.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913727|ref|ZP_06321516.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282916205|ref|ZP_06323967.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918653|ref|ZP_06326390.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282922234|ref|ZP_06329929.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|282923643|ref|ZP_06331323.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282927178|ref|ZP_06334800.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A10102]
 gi|283770020|ref|ZP_06342912.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957693|ref|ZP_06375146.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284023882|ref|ZP_06378280.1| general stress protein 13 [Staphylococcus aureus subsp. aureus 132]
 gi|293500769|ref|ZP_06666620.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509720|ref|ZP_06668431.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524307|ref|ZP_06670994.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294850230|ref|ZP_06790966.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|295405760|ref|ZP_06815569.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8819]
 gi|295427438|ref|ZP_06820073.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296275850|ref|ZP_06858357.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MR1]
 gi|297208410|ref|ZP_06924840.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245351|ref|ZP_06929222.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8796]
 gi|297590202|ref|ZP_06948841.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|300912486|ref|ZP_07129929.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381492|ref|ZP_07364142.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|21204004|dbj|BAB94702.1| MW0837 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241244|emb|CAG39923.1| putative S1 RNA binding domain [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244174|emb|CAG42600.1| putative S1 RNA binding domain [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285832|gb|AAW37926.1| general stress protein 13 [Staphylococcus aureus subsp. aureus COL]
 gi|82656101|emb|CAI80510.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|147740458|gb|ABQ48756.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945894|gb|ABR51830.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373837|dbj|BAF67097.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|253729301|gb|EES98030.1| RNA binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272574|gb|EEV04697.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275863|gb|EEV07336.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279082|gb|EEV09693.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282417|gb|EEV12552.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285097|gb|EEV15216.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|257789282|gb|EEV27622.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9781]
 gi|257841498|gb|EEV65939.1| S1 RNA-binding protein [Staphylococcus aureus A9763]
 gi|257842260|gb|EEV66688.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257845371|gb|EEV69405.1| general stress protein 13 [Staphylococcus aureus A9635]
 gi|257848985|gb|EEV72968.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257852326|gb|EEV76252.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8115]
 gi|257853983|gb|EEV76937.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6300]
 gi|257856915|gb|EEV79818.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|257860308|gb|EEV83140.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|257862326|gb|EEV85095.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262074860|gb|ACY10833.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940457|emb|CBI48834.1| putative S1 RNA binding domain [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314511|gb|EFB44901.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317787|gb|EFB48159.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319645|gb|EFB49993.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322759|gb|EFB53081.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325923|gb|EFB56231.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327915|gb|EFB58197.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331677|gb|EFB61189.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590867|gb|EFB95942.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A10102]
 gi|282593524|gb|EFB98518.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|282596447|gb|EFC01408.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282763468|gb|EFC03597.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|283460167|gb|EFC07257.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470154|emb|CAQ49365.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283791144|gb|EFC29959.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921270|gb|EFD98331.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095774|gb|EFE26035.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467817|gb|EFF10332.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M809]
 gi|294823004|gb|EFG39437.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|294969195|gb|EFG45215.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8819]
 gi|295128826|gb|EFG58457.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296887149|gb|EFH26052.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177654|gb|EFH36904.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8796]
 gi|297576501|gb|EFH95216.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|298694194|gb|ADI97416.1| General stress protein 13 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886732|gb|EFK81934.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302332568|gb|ADL22761.1| S1 RNA-binding domain protein [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302750783|gb|ADL64960.1| S1 RNA-binding domain protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304339855|gb|EFM05799.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438682|gb|ADQ77753.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315130465|gb|EFT86452.1| hypothetical protein CGSSa03_03553 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315194487|gb|EFU24879.1| hypothetical protein CGSSa00_12210 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315197308|gb|EFU27646.1| hypothetical protein CGSSa01_00371 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|323440890|gb|EGA98598.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O11]
 gi|323443818|gb|EGB01430.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O46]
 gi|329313622|gb|AEB88035.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329726180|gb|EGG62650.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21189]
 gi|329728295|gb|EGG64734.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329733930|gb|EGG70252.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 125

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 11  KVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKL 70

Query: 684 KLSMK 688
            LS+K
Sbjct: 71  NLSLK 75


>gi|307292731|ref|ZP_07572577.1| ribosomal protein S1 [Sphingobium chlorophenolicum L-1]
 gi|306880797|gb|EFN12013.1| ribosomal protein S1 [Sphingobium chlorophenolicum L-1]
          Length = 570

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  + D+GAFV   G  DGL+H++ LS +R+   ++++  GDTV V+++  + D
Sbjct: 201 QIIEGVVKNITDYGAFVDLGGI-DGLLHVTDLSYKRINHPNEMINIGDTVRVQIIRINRD 259

Query: 680 RGKIKLSMKVVDQN 693
             +I L MK ++ +
Sbjct: 260 TQRISLGMKQLESD 273


>gi|237813382|ref|YP_002897833.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
 gi|237506567|gb|ACQ98885.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 19/175 (10%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++  R  E   +  
Sbjct: 1   MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGL 466
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGV 171


>gi|239825786|ref|YP_002948410.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
 gi|239806079|gb|ACS23144.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 728

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D   V +   VWV  +D  D+G
Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVDNVDL-DKG 710

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 711 RISLSM 716


>gi|161610761|ref|NP_879751.2| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
 gi|332381523|gb|AEE66370.1| 30S ribosomal protein S1 [Bordetella pertussis CS]
          Length = 571

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 204 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 263 SRVSLGVK 270



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 285 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 343

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 344 EIDEDRRRISLGMKQCRQN 362



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D ++ 
Sbjct: 378 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTEKE 437

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 438 RISLGIK 444


>gi|254252975|ref|ZP_04946293.1| RNase PH [Burkholderia dolosa AUO158]
 gi|124895584|gb|EAY69464.1| RNase PH [Burkholderia dolosa AUO158]
          Length = 246

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  D L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPDFLRDRGQG 62

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           +T++DG +  A++ G+ +A  DA             PI+  VA I++G+ +     + + 
Sbjct: 123 VTQADGGTRTASITGAFVAAHDAVSTLIAAGKLVRSPITDHVAAISVGVYEG----VPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T +G
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAG 200


>gi|325289526|ref|YP_004265707.1| Tex-like protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324964927|gb|ADY55706.1| Tex-like protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 717

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
           G V  V+DFG FV     +DGLVHIS+++ + +   S++V  GD V V +L  + + K I
Sbjct: 649 GTVRNVIDFGVFVDIGVHQDGLVHISEMADKFIRHPSEMVAVGDLVKVVVLAVETKKKRI 708

Query: 684 KLSMKVVDQ 692
            LSMK   Q
Sbjct: 709 SLSMKQAQQ 717


>gi|320160398|ref|YP_004173622.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
 gi|319994251|dbj|BAJ63022.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
          Length = 332

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +I  G V  V DFGAFV   G  +GL+H+S+LS  RV   +D+++ G  V   +L    
Sbjct: 174 GEIVNGTVTNVTDFGAFVDL-GGLEGLIHVSELSWGRVQHPTDILQVGVPVRALVLSVSA 232

Query: 679 DRGKIKLSMKVVDQN 693
           + G++ LS+K +  N
Sbjct: 233 ENGRVALSLKRLCPN 247


>gi|325106225|ref|YP_004275879.1| Tex-like protein [Pedobacter saltans DSM 12145]
 gi|324975073|gb|ADY54057.1| Tex-like protein [Pedobacter saltans DSM 12145]
          Length = 754

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV     +DGLVH+SQ+S   ++  ++VVK    V V + + D  R +I
Sbjct: 643 GIVTNITNFGAFVDIGVHQDGLVHLSQMSDRFISNPNEVVKVQQRVEVTVTEIDTARNRI 702

Query: 684 KLSMK 688
            LSMK
Sbjct: 703 GLSMK 707


>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 245

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR    +R I+   G   +  GS+L   GDT+ +   +      E     L G  +
Sbjct: 5   ARADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASF----TEGVPRWLKGEGK 60

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  S      G    R     RL  R++  V+   A    T+ +  
Sbjct: 61  GWVTAEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV--PISKP----VAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL D+       G+  P +KP    V+ I++G++ DG   +
Sbjct: 121 DVLQADGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGII-DGTPML 179

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED     D  V  T SG
Sbjct: 180 ---DLPYTEDVRAETDMNVVVTGSG 201


>gi|315658717|ref|ZP_07911587.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
 gi|315496348|gb|EFU84673.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
          Length = 126

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDDEGKL 71

Query: 684 KLSMK 688
            LS+K
Sbjct: 72  NLSLK 76


>gi|289551215|ref|YP_003472119.1| General stress protein 13 [Staphylococcus lugdunensis HKU09-01]
 gi|289180747|gb|ADC87992.1| General stress protein 13 [Staphylococcus lugdunensis HKU09-01]
          Length = 126

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDDEGKL 71

Query: 684 KLSMK 688
            LS+K
Sbjct: 72  NLSLK 76


>gi|288905732|ref|YP_003430954.1| S1 RNA binding domain protein [Streptococcus gallolyticus UCN34]
 gi|325978764|ref|YP_004288480.1| RNA binding S1 domain-containing protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732458|emb|CBI14030.1| putative S1 RNA binding domain protein [Streptococcus gallolyticus
           UCN34]
 gi|325178692|emb|CBZ48736.1| RNA binding S1 domain protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 710

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VV 664
           R+ +  I+D+ E+ +  +G V  V+DFGAFV      DGL+HISQ+S   V   S    V
Sbjct: 623 RQDVLDISDL-EIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSV 681

Query: 665 KEGDTVWVKLLDFDDRGKIKLSM 687
            +  TVWV  +D  +RGKI LS+
Sbjct: 682 GDVVTVWVSKID-KERGKINLSL 703


>gi|163856200|ref|YP_001630498.1| 30S ribosomal protein S1 [Bordetella petrii DSM 12804]
 gi|163259928|emb|CAP42229.1| 30S ribosomal protein S1 [Bordetella petrii]
          Length = 575

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 208 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 266

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 267 SRVSLGVK 274



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 289 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 347

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 348 EIDEDRRRISLGMKQCRQN 366



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D D+ 
Sbjct: 382 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDEIEAVVLGIDTDKE 441

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 442 RISLGIK 448


>gi|161609266|ref|NP_890000.2| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
 gi|161610386|ref|NP_885303.2| 30S ribosomal protein S1 [Bordetella parapertussis 12822]
          Length = 571

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 204 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 263 SRVSLGVK 270



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 285 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 343

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 344 EIDEDRRRISLGMKQCRQN 362



 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D D+ 
Sbjct: 378 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTDKE 437

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 438 RISLGIK 444


>gi|312622868|ref|YP_004024481.1| ribonuclease ph [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203335|gb|ADQ46662.1| ribonuclease PH [Caldicellulosiruptor kronotskyensis 2002]
          Length = 258

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             P++  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S +     L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQ 232

Query: 536 SKVLSE 541
            +VL E
Sbjct: 233 REVLGE 238


>gi|306831829|ref|ZP_07464985.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426027|gb|EFM29143.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 710

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VV 664
           R+ +  I+D+ E+ +  +G V  V+DFGAFV      DGL+HISQ+S   V   S    V
Sbjct: 623 RQDVLDISDL-EIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSV 681

Query: 665 KEGDTVWVKLLDFDDRGKIKLSM 687
            +  TVWV  +D  +RGKI LS+
Sbjct: 682 GDVVTVWVSKID-KERGKINLSL 703


>gi|158334623|ref|YP_001515795.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
 gi|158304864|gb|ABW26481.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
          Length = 289

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++  G V  +  FGAF+   G   GL+HI ++S   V   S V+K G+ +   +LD 
Sbjct: 185 EIGQLVSGTVSDLKPFGAFIKLDGL-TGLLHIKEVSQNFVPNLSAVLKIGEPIKAIVLDL 243

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  RG++ LS KV++   G+
Sbjct: 244 DPGRGRVSLSTKVLENRPGE 263


>gi|318042629|ref|ZP_07974585.1| 30S ribosomal protein S1 [Synechococcus sp. CB0101]
          Length = 355

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 239 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHTVLNVNDQMKVMIIDL 297

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 298 DAERGRISLSTKALEPEPG 316


>gi|302391286|ref|YP_003827106.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
 gi|302203363|gb|ADL12041.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
          Length = 251

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGRD + +R+++      +   GS L   GDT+ I   ++     E+ V      Q 
Sbjct: 1   MRVDGRDRDELREVTITRDFTKYAEGSILISTGDTKVICNASV-----EESVPYFLRDQG 55

Query: 372 NDFMM-HYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
             ++   Y  LP AT       +  G  S R     RL  RA+  V+        T+ + 
Sbjct: 56  QGWITGEYAMLPRATESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA            +P+   +A  ++G++ DG   + 
Sbjct: 116 CDVIQADGGTRTASITGAFVALIDALDYLLEKDKIDEMPVKSFIAATSVGII-DGAPAL- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED    +D  +  T+ G
Sbjct: 174 --DLCYKEDSSAQVDLNLVMTEEG 195


>gi|121716713|ref|XP_001275889.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
 gi|119404046|gb|EAW14463.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
          Length = 1819

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAF--VHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            +I D+ +V +I  G+V KV +FGAF  V       GL H S+++ +RV     + +EGD 
Sbjct: 1313 TINDL-KVGQIVTGKVRKVEEFGAFIVVDRSANISGLCHRSEMADKRVENAKALYEEGDV 1371

Query: 670  VWVKLLDFD-DRGKIKLSMK 688
            V  K++  D D+GKI  S+K
Sbjct: 1372 VKAKIIKIDRDQGKISFSLK 1391


>gi|83648974|ref|YP_437409.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
 gi|123530517|sp|Q2S8P0|RNPH_HAHCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83637017|gb|ABC32984.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 95/244 (38%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  +  RDI       +   GS L   GDT+ I   T+    +      L G  +
Sbjct: 1   MRPSGRQPDQTRDIKITKNYTKHAEGSVLVEFGDTKVICTATV----ENGVPRFLRGEDQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++  A   ++ G      RL  R++   +        ++ I  
Sbjct: 57  GWVTAEYGMLPRATGTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI   VA I++G+ +     + +
Sbjct: 117 DVIQADGGTRTASITGGFVAMADAINSLLAKGQLKNNPILHKVAAISVGVYEG----VPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D  V  TD  G   +Q   +    S   +   L  A +G   +    
Sbjct: 173 VDLDYDEDSKAETDMNVVMTDQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQ 232

Query: 536 SKVL 539
            +VL
Sbjct: 233 EEVL 236


>gi|332529387|ref|ZP_08405348.1| 30S ribosomal protein S1 [Hylemonella gracilis ATCC 19624]
 gi|332041185|gb|EGI77550.1| 30S ribosomal protein S1 [Hylemonella gracilis ATCC 19624]
          Length = 559

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 194 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PQSTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 368 KGPVKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQDVEAIVLAIDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|320538386|ref|ZP_08038261.1| S1 RNA binding domain protein [Treponema phagedenis F0421]
 gi|320144771|gb|EFW36512.1| S1 RNA binding domain protein [Treponema phagedenis F0421]
          Length = 800

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG++  V+DFGAFV        L+HIS++S   ++   + VK GD V  K++  D DR +
Sbjct: 649 KGKIKNVVDFGAFVDLGIKETALLHISEMSDSFISDPLEAVKVGDIVECKIIALDEDRRR 708

Query: 683 IKLSMK 688
           I LS K
Sbjct: 709 ISLSRK 714


>gi|311104916|ref|YP_003977769.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans A8]
 gi|310759605|gb|ADP15054.1| ribosomal protein S1 [Achromobacter xylosoxidans A8]
          Length = 576

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 209 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 SRVSLGVK 275



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 290 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 349 EIDEDRRRISLGMKQCRQN 367



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D D+ 
Sbjct: 383 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVLGIDTDKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|33574088|emb|CAE38413.1| 30S ribosomal protein S1 [Bordetella parapertussis]
 gi|33576879|emb|CAE33959.1| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
          Length = 576

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 209 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 SRVSLGVK 275



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 290 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 349 EIDEDRRRISLGMKQCRQN 367



 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D D+ 
Sbjct: 383 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTDKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|188584717|ref|YP_001916262.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349404|gb|ACB83674.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 120

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V K  +G V  + +FGAFV   G   GLVHIS+++   V      + E + V VK+L  
Sbjct: 4   KVGKTVEGVVKGITNFGAFVELPGGETGLVHISEVADTYVKDIRKFISEEEHVKVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKPI 698
           D   KI LS+K V +N  K +
Sbjct: 64  DG-DKIGLSLKRVRENKEKHV 83


>gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
 gi|81390060|sp|Q68WL4|RS1_RICTY RecName: Full=30S ribosomal protein S1
 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      I +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           ++    V V ++ FD++ K I L +K +D N
Sbjct: 248 LEFNQKVKVMVIKFDEKTKRISLGIKQLDSN 278


>gi|17227632|ref|NP_484180.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
 gi|17135114|dbj|BAB77660.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
          Length = 343

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|312890968|ref|ZP_07750494.1| Tex-like protein [Mucilaginibacter paludis DSM 18603]
 gi|311296544|gb|EFQ73687.1| Tex-like protein [Mucilaginibacter paludis DSM 18603]
          Length = 756

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV     +DGLVH+SQ++   +   ++V+K    V V + D D+ R +I
Sbjct: 642 GIVTNITNFGAFVDIGVHQDGLVHLSQITNRYIKDPNEVLKVHQKVKVTVTDVDESRKRI 701

Query: 684 KLSMK 688
            LSMK
Sbjct: 702 ALSMK 706


>gi|257455031|ref|ZP_05620275.1| ribosomal protein S1 [Enhydrobacter aerosaccus SK60]
 gi|257447544|gb|EEV22543.1| ribosomal protein S1 [Enhydrobacter aerosaccus SK60]
          Length = 557

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+HI+ ++  R+   S+VV+ G  + VK+L FD +R ++
Sbjct: 196 GVVKNLTDYGAFVDLGGI-DGLLHITDMAWRRIKHPSEVVEVGQELKVKVLKFDRERNRV 254

Query: 684 KLSMK 688
            L +K
Sbjct: 255 SLGLK 259



 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           K +V  + D+G F       +GLVH+S++  T +    S VV+ GD + V++LD D DR 
Sbjct: 280 KARVTNLTDYGCFAEIADGIEGLVHVSEMDHTNKNIHPSKVVQIGDEIMVQILDIDEDRR 339

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 340 RISLGIK 346



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS TE   +      +GDTV   +L  D +  +
Sbjct: 368 GTIKSITDFGIFIGLEGGIDGLVHLSDLSWTESGEEAIRNYNKGDTVEAVILSVDAEANR 427

Query: 683 IKLSMK 688
           I L +K
Sbjct: 428 ISLGIK 433


>gi|148264978|ref|YP_001231684.1| 30S ribosomal protein S1 [Geobacter uraniireducens Rf4]
 gi|146398478|gb|ABQ27111.1| SSU ribosomal protein S1P [Geobacter uraniireducens Rf4]
          Length = 403

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE    + G+V ++  FGAFV      DGL+HIS+L   +R+    +V+KEG+TV VK+ 
Sbjct: 287 PE-GSFHTGRVARLAQFGAFVTLDSGVDGLIHISKLGAGKRINHPREVIKEGETVEVKVE 345

Query: 676 DFDDRGKIKLSMKVVD 691
              DR   +LS+ + +
Sbjct: 346 SV-DRENRRLSLSLAE 360


>gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
 gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR  + +R +S ++G      GS L   G+T+ +   ++    ++     L G  +
Sbjct: 1   MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASV----EDNVPPWLRGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +R     G PS R     RL  R++   +   A     + +  
Sbjct: 57  GWVTGEYSMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ LAL  A             P+   +A ++ G+V +GD  +  
Sbjct: 117 DVLQADGGTRTAAITGAWLALKAAVAYLMEEDVLKADPVIAQIAAVSAGVV-NGDCVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED +   D     T +G
Sbjct: 174 -DLEYEEDRVAETDANFVLTSTG 195


>gi|94497990|ref|ZP_01304554.1| ribosomal protein S1 [Sphingomonas sp. SKA58]
 gi|94422573|gb|EAT07610.1| ribosomal protein S1 [Sphingomonas sp. SKA58]
          Length = 570

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +I +G V  + D+GAFV   G  DGL+H++ LS +R+   ++++  GDTV V+++  + D
Sbjct: 201 QIIEGVVKNITDYGAFVDLGGI-DGLLHVTDLSYKRINHPNEMINIGDTVKVQIIRINRD 259

Query: 680 RGKIKLSMKVVDQN 693
             +I L MK ++ +
Sbjct: 260 TQRISLGMKQLESD 273


>gi|82701201|ref|YP_410767.1| ribonuclease PH [Nitrosospira multiformis ATCC 25196]
 gi|123545290|sp|Q2YCZ6|RNPH_NITMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|82409266|gb|ABB73375.1| RNAse PH [Nitrosospira multiformis ATCC 25196]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 28/234 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +       +   GS L   GDT+ I   ++    DE+    L G  +
Sbjct: 1   MRPSKRRPDQLRSVQITRHYTRHAEGSVLIECGDTRIICTASV----DEKVPLFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T E  RM      G  S R +   RL  RA+  V+  T     T+++
Sbjct: 57  GWLTAEYGMLPRSTNE--RMQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQV 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +A+ DA             PI+  VA +++G+ +     +
Sbjct: 115 DCDVIQADGGTRTASITGAFVAVHDAIGTLLRKQAIEATPITGHVAAVSVGVYEG----V 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRG 527
            + D+   ED     D  +  TD  G+  MQ   +    S N + M L  A++G
Sbjct: 171 PMLDLDYLEDSRCDTDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQG 224


>gi|227518377|ref|ZP_03948426.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
 gi|227074055|gb|EEI12018.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
          Length = 451

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A        LM   +   PI + +A +++G++ DG  + +L
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG--YCVL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +  T+SG
Sbjct: 176 -DLDYAEDSNAAVDMNIVMTESG 197


>gi|298492501|ref|YP_003722678.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
 gi|298234419|gb|ADI65555.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
          Length = 341

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|212223383|ref|YP_002306619.1| translation initiation factor IF-2 subunit alpha [Thermococcus
           onnurineus NA1]
 gi|229847552|sp|B6YT35|IF2A_THEON RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|212008340|gb|ACJ15722.1| translation initiation factor eIF-2, alpha subunit [Thermococcus
           onnurineus NA1]
          Length = 275

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V  +  +GAF+       ++G +HIS++++  V    D VKE
Sbjct: 1   MPRKAKEYPEEGEFVIATVKSIHPYGAFLKLDEYPGKEGFMHISEVASTWVKNIRDYVKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V  K++  D ++G I LS+K V+Q   K
Sbjct: 61  GQKVVAKVIRVDPNKGHIDLSLKRVNQQQRK 91


>gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL]
 gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL]
          Length = 258

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +   D G
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKG 195


>gi|308174830|ref|YP_003921535.1| phosphorylase or nucleotidyl transferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607694|emb|CBI44065.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus amyloliquefaciens DSM
           7]
 gi|328554785|gb|AEB25277.1| general stress protein 13 [Bacillus amyloliquefaciens TA208]
 gi|328913142|gb|AEB64738.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus amyloliquefaciens LL3]
          Length = 130

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQVKVLAV 65

Query: 678 D-DRGKIKLSMKVV 690
           D ++GKI LS++  
Sbjct: 66  DEEKGKISLSIRAT 79


>gi|306833951|ref|ZP_07467075.1| YhgF like protein [Streptococcus bovis ATCC 700338]
 gi|304423952|gb|EFM27094.1| YhgF like protein [Streptococcus bovis ATCC 700338]
          Length = 708

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VV 664
           R+ +  I+D+ E+ +  +G V  V+DFGAFV      DGL+HISQ+S   V   S    V
Sbjct: 621 RQDVLDISDL-EIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSV 679

Query: 665 KEGDTVWVKLLDFDDRGKIKLSM 687
            +  TVWV  +D  +RGKI LS+
Sbjct: 680 GDVVTVWVSKID-KERGKINLSL 701


>gi|254432396|ref|ZP_05046099.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
 gi|197626849|gb|EDY39408.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
          Length = 351

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 235 EVGEVVLGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHTVLNVNDQMKVMIIDL 293

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 294 DAERGRISLSTKALEPEPG 312


>gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1]
 gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1]
          Length = 252

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R IS   G  ++  GS+L   G+T+ +   +L     E     L G  R
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASL----TEGVPRWLKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL +A               P+   +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  T SG
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSG 207


>gi|34581621|ref|ZP_00143101.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
 gi|28263006|gb|EAA26510.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           +     V V ++ FD++ K I L +K +D N  + I
Sbjct: 248 LDFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAI 283


>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
           mellifera]
          Length = 284

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R I  ++G+  +  GS+    G+T+ +V V    +       S S   +
Sbjct: 29  LRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITK 88

Query: 372 NDFMMHYNF--LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
                 Y+      ++GE  R     R+        + A+  ++     +P + + I  E
Sbjct: 89  GIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAII-HLELYPRSQIDIYVE 147

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
             + DGS   A+V  ++LAL+DAG+PI     G  + L+
Sbjct: 148 ALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLI 186


>gi|187477852|ref|YP_785876.1| 30S ribosomal protein S1 [Bordetella avium 197N]
 gi|115422438|emb|CAJ48963.1| 30S ribosomal protein S1 [Bordetella avium 197N]
          Length = 570

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 203 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 SRVSLGVK 269



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 284 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 343 EIDEDRRRISLGMKQCRQN 361



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D ++ 
Sbjct: 377 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVLGIDTEKE 436

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 437 RISLGIK 443


>gi|317505519|ref|ZP_07963437.1| 30S ribosomal protein S1 [Prevotella salivae DSM 15606]
 gi|315663432|gb|EFV03181.1| 30S ribosomal protein S1 [Prevotella salivae DSM 15606]
          Length = 593

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA ++ I S     E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQKKEIISHL---EKGQVLEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +VV     + V +LDFD D+ +I L +K
Sbjct: 253 HEVVSLDQKINVVILDFDEDKKRIALGLK 281



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +  GD V   +L  D D  
Sbjct: 302 KGKVVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLHVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWESI 378


>gi|170698512|ref|ZP_02889583.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
 gi|170136596|gb|EDT04853.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
          Length = 246

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   D   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+ +     + L 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVYEG----VPLL 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T +G
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAG 200


>gi|125624444|ref|YP_001032927.1| general stress protein GSP13 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493252|emb|CAL98219.1| general stress protein GSP13 [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 156

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA---------RDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 19  PKIGDIVEVEIIGMQDYGAFVKFFLQNPETNEKIEQKGLIHISEIQSGYVKSIHDIAKIG 78

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             +  +++D D+  GKI LS++ +++N
Sbjct: 79  QKIMAQIIDIDEYNGKISLSIRSLEKN 105


>gi|293604177|ref|ZP_06686585.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
 gi|292817402|gb|EFF76475.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
 gi|317402985|gb|EFV83524.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans C54]
          Length = 575

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 208 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 266

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 267 SRVSLGVK 274



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  G+ V V +L
Sbjct: 289 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVL 347

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK   QN
Sbjct: 348 EIDEDRRRISLGMKQCRQN 366



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D D+ 
Sbjct: 382 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIEAVVLGIDTDKE 441

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 442 RISLGIK 448


>gi|257871354|ref|ZP_05651007.1| S1 RNA-binding domain-containing protein [Enterococcus gallinarum
           EG2]
 gi|257805518|gb|EEV34340.1| S1 RNA-binding domain-containing protein [Enterococcus gallinarum
           EG2]
          Length = 160

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V V +   
Sbjct: 17  EVGAKLKGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLSIGDEVTVVVTAI 76

Query: 678 DDRGKIKLSMK 688
            + GKI LS++
Sbjct: 77  GNDGKIGLSIR 87


>gi|229586799|ref|YP_002845300.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
 gi|228021849|gb|ACP53557.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           +     V V ++ FD++ K I L +K +D N  + I
Sbjct: 248 LDFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAI 283


>gi|165933332|ref|YP_001650121.1| 30S ribosomal protein S1 [Rickettsia rickettsii str. Iowa]
 gi|165908419|gb|ABY72715.1| SSU ribosomal protein S1P [Rickettsia rickettsii str. Iowa]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           +     V V ++ FD++ K I L +K +D N  + I
Sbjct: 248 LDFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAI 283


>gi|162452566|ref|YP_001614933.1| hypothetical protein sce4290 [Sorangium cellulosum 'So ce 56']
 gi|161163148|emb|CAN94453.1| hypothetical protein sce4290 [Sorangium cellulosum 'So ce 56']
          Length = 788

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +R++ D+    ++ +G V  V  FGAFV     +DGLVH+SQL+   V   ++V K 
Sbjct: 647 RDDVRTMEDLKPGMEL-EGVVTNVTAFGAFVDIGVHQDGLVHVSQLADRFVKDPNEVAKV 705

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G+ + V++L+ D  R +I L+ K
Sbjct: 706 GEKIKVRVLEIDLVRKRISLTAK 728


>gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1]
 gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R++    G      GS L   G+T+ +   ++    ++       G+  
Sbjct: 3   TREDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASV----EDGVPRWRQGSGL 58

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  S  G    R     RL  R++   +   A    T+ +  
Sbjct: 59  GWLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL+DA              PIS  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDTG 198


>gi|319792457|ref|YP_004154097.1| ribosomal protein s1 [Variovorax paradoxus EPS]
 gi|315594920|gb|ADU35986.1| ribosomal protein S1 [Variovorax paradoxus EPS]
          Length = 562

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 194 VVRGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + +V  GD V V +L
Sbjct: 275 PQSTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPNKIVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     +T+    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEAGETAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 428 RISLGIKQLDSD 439


>gi|300769616|ref|ZP_07079501.1| RNA binding protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300492809|gb|EFK27992.1| RNA binding protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 133

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V  +  +GAFV   G   GL+HIS+     V   ++ +K G  V V +LD D+  GKI
Sbjct: 12  GRVTGIQPYGAFVTLDGEHQGLIHISECHEGYVKSITEYLKVGQAVDVIILDIDEYTGKI 71

Query: 684 KLSMKVVDQ 692
            LS++ ++ 
Sbjct: 72  SLSLRCIEH 80


>gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
 gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R +      ++   GS L   GDT+ I   ++  R      DS  G   
Sbjct: 2   LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGW-- 59

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y+ LP AT      ++S++    R  EI   RL  R++  ++        T+ +
Sbjct: 60  --ITAEYSMLPRATAVRNQRDISKLKLNGRSSEI--QRLIGRSLRTIVDLKLLGERTITV 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G  +AL DA             PI   VA  ++G+V +G++ +
Sbjct: 116 DCDVIQADGGTRTASITGGYVALADACRTLVKNGLISKTPIIGIVAATSVGIV-NGEELL 174

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            L  I   ED    +D  V  TD G
Sbjct: 175 DLCYI---EDSNAEVDMNVIMTDKG 196


>gi|222528843|ref|YP_002572725.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
 gi|254808576|sp|B9MQJ8|RNPH_ANATD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|222455690|gb|ACM59952.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
          Length = 258

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             P++  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +   D G
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKG 195


>gi|28378830|ref|NP_785722.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum WCFS1]
 gi|254557036|ref|YP_003063453.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum JDM1]
 gi|308181030|ref|YP_003925158.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28271667|emb|CAD64573.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum WCFS1]
 gi|254045963|gb|ACT62756.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum JDM1]
 gi|308046521|gb|ADN99064.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 135

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V  +  +GAFV   G   GL+HIS+     V   ++ +K G  V V +LD D+  GKI
Sbjct: 14  GRVTGIQPYGAFVTLDGEHQGLIHISECHEGYVKSITEYLKVGQAVDVIILDIDEYTGKI 73

Query: 684 KLSMKVVDQ 692
            LS++ ++ 
Sbjct: 74  SLSLRCIEH 82


>gi|311896220|dbj|BAJ28628.1| putative ribonuclease PH [Kitasatospora setae KM-6054]
          Length = 241

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ +    +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERNWSKHAEGSVLVSYGDTKVLCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL+DA             G PI+  V+ +++G++    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGII----DGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+  +ED     D  +  T  G
Sbjct: 175 MLDLRYEEDVRAETDMNIVCTSDG 198


>gi|319762547|ref|YP_004126484.1| ribosomal protein s1 [Alicycliphilus denitrificans BC]
 gi|330824564|ref|YP_004387867.1| 50S ribosomal protein S1 [Alicycliphilus denitrificans K601]
 gi|317117108|gb|ADU99596.1| ribosomal protein S1 [Alicycliphilus denitrificans BC]
 gi|329309936|gb|AEB84351.1| ribosomal protein S1 [Alicycliphilus denitrificans K601]
          Length = 561

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 194 IVNGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    + +V  GD V V +L
Sbjct: 275 PSGTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPNKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           + D D+ +I L MK
Sbjct: 334 EIDEDKRRISLGMK 347



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     +++    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|229824323|ref|ZP_04450392.1| hypothetical protein GCWU000282_01644 [Catonella morbi ATCC 51271]
 gi|229786123|gb|EEP22237.1| hypothetical protein GCWU000282_01644 [Catonella morbi ATCC 51271]
          Length = 133

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +GQ+  + ++G FV       GLVHIS+     + + S+ +K GD V V ++D 
Sbjct: 5   KIGDIVEGQITGIQNYGVFVGLSPTEQGLVHISECKHGYMNELSNQIKVGDKVKVMVIDI 64

Query: 678 DD-RGKIKLSMKVV 690
           D+   KI LSM+V+
Sbjct: 65  DEYTKKISLSMRVL 78


>gi|239814621|ref|YP_002943531.1| 30S ribosomal protein S1 [Variovorax paradoxus S110]
 gi|239801198|gb|ACS18265.1| ribosomal protein S1 [Variovorax paradoxus S110]
          Length = 562

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 194 VVRGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + +V  GD V V +L
Sbjct: 275 PQSTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPNKIVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     +T+    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEAGETAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 428 RISLGIKQLDSD 439


>gi|113955395|ref|YP_729757.1| 30S ribosomal protein S1 [Synechococcus sp. CC9311]
 gi|113882746|gb|ABI47704.1| ribosomal protein S1 [Synechococcus sp. CC9311]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 188 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDL 246

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 247 DAERGRISLSTKALEPEPG 265


>gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
 gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP +T       A  R +IG       RL  R++  V+   A    T+ +  
Sbjct: 59  WVTAEYSMLPRSTNTRGDREA-VRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL DA               P++  VA I++G+V    D  
Sbjct: 118 DVLQADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIV----DGT 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            L D+  +ED     D  V  T  G
Sbjct: 174 PLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|87124899|ref|ZP_01080746.1| RNA binding S1 [Synechococcus sp. RS9917]
 gi|86167219|gb|EAQ68479.1| RNA binding S1 [Synechococcus sp. RS9917]
          Length = 369

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 253 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDL 311

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 312 DAERGRISLSTKALEPEPG 330


>gi|82540029|ref|XP_724361.1| ATP-dependent helicase Ddx8 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478978|gb|EAA15926.1| ATP-dependent helicase ddx8 [Plasmodium yoelii yoelii]
          Length = 744

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 13/90 (14%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL-STERVAKTSDVVKEGDTVWVK 673
           ++N I+ G++ K+ DFG FV F    G ++GLVHI+ +    +    +D  K    V VK
Sbjct: 225 KINNIFSGKIKKITDFGMFVSFKTREGYKEGLVHITDIEKNNKRINLNDKFKRNMIVKVK 284

Query: 674 LLDFDDRG----KIKLSMKVVDQNTGKPIV 699
           +     +G    KI L+M  VDQ TGK + 
Sbjct: 285 I-----KGIFGEKISLNMSEVDQKTGKNLA 309


>gi|320547221|ref|ZP_08041514.1| YhgF like protein [Streptococcus equinus ATCC 9812]
 gi|320448109|gb|EFW88859.1| YhgF like protein [Streptococcus equinus ATCC 9812]
          Length = 710

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VV 664
           R+ +  I+D+ E+ +  +G V  V+DFGAFV      DGL+HISQ+S   V   S    V
Sbjct: 623 RQDVLDISDL-EIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSV 681

Query: 665 KEGDTVWVKLLDFDDRGKIKLSM 687
            +  TVWV  +D  +RGKI LS+
Sbjct: 682 GDVVTVWVSKID-KERGKINLSL 703


>gi|150865289|ref|XP_001384440.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
 gi|149386545|gb|ABN66411.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
          Length = 1699

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            V +I++G V +  DFG F+   G  +  GL H SQ++ + V   + +  EGD V VKLL 
Sbjct: 1246 VGEIFEGSVKRATDFGVFIKLDGTLNITGLCHHSQIADKDVDNVTSLFGEGDRVKVKLLA 1305

Query: 677  FD-DRGKIKLSMK 688
             D D+ ++ L MK
Sbjct: 1306 IDSDKKQLSLGMK 1318


>gi|157825908|ref|YP_001493628.1| 30S ribosomal protein S1 [Rickettsia akari str. Hartford]
 gi|157799866|gb|ABV75120.1| 30S ribosomal protein S1 [Rickettsia akari str. Hartford]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLAKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           ++    V V ++ FD++ K I L +K +D N
Sbjct: 248 LEFNQKVKVMVIKFDEKTKRISLGIKQLDSN 278


>gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
 gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
          Length = 261

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+DGR  + +R +    G      GS L   G T+     ++     E       GT  
Sbjct: 3   TRLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASV----TEGVPRWRKGTGE 58

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R     RL  R++   +   A    T+ +  
Sbjct: 59  GWLTAEYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL DA              PIS  +A +++GLV    D  +
Sbjct: 119 DVLQADGGTRTAAITGAFVALSDAVTWLAASGRLADPQPISCAIAAVSVGLV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDTG 198


>gi|75907727|ref|YP_322023.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
 gi|75701452|gb|ABA21128.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
          Length = 343

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|116511722|ref|YP_808938.1| RNA-binding protein [Lactococcus lactis subsp. cremoris SK11]
 gi|116107376|gb|ABJ72516.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Lactococcus lactis subsp. cremoris SK11]
          Length = 143

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA---------RDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFFLQNPETNEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             +  +++D D+  GKI LS++ +++N
Sbjct: 66  QKIMAQIIDIDEYNGKISLSIRSLEKN 92


>gi|324991778|gb|EGC23710.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353]
          Length = 119

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D+D+  GK
Sbjct: 8   KGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKIGQQVLVQVVDYDEFSGK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  SSLSMRTLEE 77


>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
          Length = 550

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG++  + DFGAFV+  G  DGL+H  + S E  AK   + K+GD V V+++  
Sbjct: 367 KVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWESNAKCKTLFKKGDEVEVRIIKI 425

Query: 678 D-DRGKIKLSMK 688
           D ++  I LS+K
Sbjct: 426 DKEKENISLSIK 437


>gi|294084819|ref|YP_003551579.1| 30S ribosomal protein S1 [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664394|gb|ADE39495.1| Ribosomal protein S1 [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 565

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 594 KIASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            I  S  A +E +R   R+  ++++ E  ++ +G V  + D+GAFV   G  DGL+H++ 
Sbjct: 170 NIVVSRRAVLEESRAEARTELVSNLQE-GQVLQGVVKNITDYGAFVDLGGV-DGLLHVTD 227

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ +R++  S+ ++ G+TV V+++ F+ +  +I L MK
Sbjct: 228 IAWQRISHPSEALQIGETVEVQVIRFNAETQRISLGMK 265



 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  + 
Sbjct: 286 EGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQQVEVMVLDVDLSKR 345

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L +K   Q TG P
Sbjct: 346 RISLGLK---QCTGNP 358



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G++  + +FG FV      DGLVH+S +S +   + + +   +GD V  K+LD D D+ 
Sbjct: 373 EGEIRNITEFGLFVGLTEEIDGLVHLSDISWDVTGEAALEGFNKGDMVKAKVLDIDTDKE 432

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 433 RISLGIK 439


>gi|315499365|ref|YP_004088169.1| ribosomal protein s1 [Asticcacaulis excentricus CB 48]
 gi|315417377|gb|ADU14018.1| ribosomal protein S1 [Asticcacaulis excentricus CB 48]
          Length = 562

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEEARAEQRTELVGQLAE-GEIRDGVVKNITDYGAFVDLGGI-DGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S +RV+  S V+  GD+V V+++  + D  +I L MK
Sbjct: 226 DMSWKRVSHPSQVLNVGDSVRVQIIKINPDTQRISLGMK 264



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 13/86 (15%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-----STERVAKTSDVVKEGDTVWVK 673
           +  + +G+V    +FG FV F    DG+VH+S L       E +AK     K+GD V  K
Sbjct: 367 IGSVIEGEVKNATEFGLFVGFENDIDGMVHLSDLDWNVAGEEAIAK----YKKGDIVKTK 422

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +LD D ++ +I L +K   Q  G P+
Sbjct: 423 VLDVDVEKERISLGIK---QLGGDPM 445


>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|75243278|sp|Q84T68|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
           Full=Exosome component 5; AltName: Full=Ribosomal
           RNA-processing protein 46; Short=oRrp46
 gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
 gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 24/185 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLSGT 369
           R DGR+   +R  S     L R HGS+ + +GDT  +  V     GTR+ E         
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGEN-------P 57

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           ++    + +  +   TG++ +      +E  +    +R +  +   T     T  ++ ++
Sbjct: 58  EKASIEVVWKPM---TGQIGK------QEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL--- 486
             +DGS     +     AL+ AG+P+      I  G+++DG+  +IL     +E  L   
Sbjct: 109 VGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE--VILDTNKAEEQQLKSF 166

Query: 487 GHMDF 491
            H+ F
Sbjct: 167 AHLVF 171


>gi|300727965|ref|ZP_07061343.1| hemin-binding protein [Prevotella bryantii B14]
 gi|299774807|gb|EFI71421.1| hemin-binding protein [Prevotella bryantii B14]
          Length = 593

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R   + I    E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQR---KEIIGKLEKGQILEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV     + V +LDFD+  K I L +K
Sbjct: 253 HEVVALDQKIKVVILDFDEEKKRIALGLK 281



 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 302 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWEAI 378


>gi|224369571|ref|YP_002603735.1| RpsA2 [Desulfobacterium autotrophicum HRM2]
 gi|223692288|gb|ACN15571.1| RpsA2 [Desulfobacterium autotrophicum HRM2]
          Length = 605

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E  RE  R+ T +  E  K+ +G V  + ++G FV   G  DGL+HI+ +S  RV   S
Sbjct: 213 LETERETARADTLEAIETGKVMEGIVKNITEYGVFVDLGGV-DGLLHITDISWGRVKHPS 271

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++    D + VK+L +D ++ ++ L +K
Sbjct: 272 ELFSVADKINVKILSYDLEKERVSLGLK 299



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + DFG FV      +GLVH+S++S E++   +     GDT+  ++++ + D  +I
Sbjct: 495 GIVTNITDFGVFVELEEGIEGLVHVSEISKEKIKTPAGHYAIGDTLTARVMNINSDERRI 554

Query: 684 KLSMKVVDQNTGKPIV 699
            LS+K +D++  + I+
Sbjct: 555 GLSIKRLDEDEDETIL 570



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GL+H+S++S T +V   S +V  G+ V   +LD   D  +
Sbjct: 321 GKVVSLTDYGAFVELEEGVEGLIHVSEMSWTRKVRHPSKIVSVGEEVEAVVLDLKPDNRR 380

Query: 683 IKLSMKVVDQN 693
           I L +K   +N
Sbjct: 381 ISLGIKQTVEN 391


>gi|223042970|ref|ZP_03613018.1| general stress protein 13 [Staphylococcus capitis SK14]
 gi|314933167|ref|ZP_07840532.1| general stress protein 13 [Staphylococcus caprae C87]
 gi|222443824|gb|EEE49921.1| general stress protein 13 [Staphylococcus capitis SK14]
 gi|313653317|gb|EFS17074.1| general stress protein 13 [Staphylococcus caprae C87]
          Length = 126

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSI 65

Query: 678 DDRGKIKLSMK 688
           DD GK+ LS+K
Sbjct: 66  DDEGKLNLSLK 76


>gi|301060657|ref|ZP_07201483.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
 gi|300445240|gb|EFK09179.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
          Length = 295

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E+E A +  + + ++ E   + +G V  + D+G F+   G  DGLVH++
Sbjct: 42  GNIVLSRRAVLEVERAAQREKVLENLEE-GVVIEGAVTNITDYGLFIDLGGI-DGLVHVT 99

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ++  +    S++ + GD + VK+L F DR K ++S+  + Q T  P
Sbjct: 100 NIAWSKTGHPSELYQIGDKIKVKVLSF-DREKERVSLG-IKQLTADP 144


>gi|254252927|ref|ZP_04946245.1| Ribosomal protein S1 [Burkholderia dolosa AUO158]
 gi|124895536|gb|EAY69416.1| Ribosomal protein S1 [Burkholderia dolosa AUO158]
          Length = 596

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 310 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 368

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 369 EIDEDRRRISLGMKQCKPN 387



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 229 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 287

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 288 NRVSLGIK 295



 Score = 37.4 bits (85), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 404 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAVVLGIDVEKER 463

Query: 683 IKLSMK 688
           I L +K
Sbjct: 464 ISLGIK 469



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA +   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 492 VVKSVDAKGAVITLTGDVEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 551

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 552 LSIKAKD 558


>gi|239941573|ref|ZP_04693510.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379]
 gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
          Length = 245

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP +T       A  R +IG       RL  R++  V+   A    T+ +  
Sbjct: 59  WVTAEYSMLPRSTNTRGDREA-VRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL DA               P++  VA I++G+V    D  
Sbjct: 118 DVLQADGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIV----DGT 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            L D+  +ED     D  V  T  G
Sbjct: 174 PLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|186475511|ref|YP_001856981.1| 30S ribosomal protein S1 [Burkholderia phymatum STM815]
 gi|184191970|gb|ACC69935.1| ribosomal protein S1 [Burkholderia phymatum STM815]
          Length = 589

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 303 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 361

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 362 EIDEDRRRISLGMKQCKPN 380



 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 222 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 280

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 281 NRVSLGIK 288



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ 
Sbjct: 396 QGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKE 455

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 456 RISLGIK 462


>gi|320530746|ref|ZP_08031790.1| ribonuclease PH [Selenomonas artemidis F0399]
 gi|320137033|gb|EFW28971.1| ribonuclease PH [Selenomonas artemidis F0399]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 21/244 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R +  + G  +   GS+L   G T+ +   T+    +E+    L G+   
Sbjct: 3   RRDLRRPDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSATV----EERVPFFLKGSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E +   A   R+ G      RL  RA+  V+   A    T+ I  +
Sbjct: 59  WVTAEYAMLPGAGTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA--------GV-PISKPVAGIAMGLVKDGDDFIILSDI 479
           + ++DG +  A++ G+ +AL++A        GV P+    A +++G+   G +   L DI
Sbjct: 119 VVQADGGTRTASITGAFVALVEACATFYTKRGVFPVRDYAAAVSVGI---GAENTPLLDI 175

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +ED    +D  +  T +G    +Q   +    S   M   L   +RG   +++   + 
Sbjct: 176 CYEEDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRA 235

Query: 539 LSES 542
           L E+
Sbjct: 236 LGET 239


>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
          Length = 246

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 24/185 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLSGT 369
           R DGR+   +R  S     L R HGS+ + +GDT  +  V     GTR+ E         
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGEN-------P 57

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           ++    + +  +   TG++ +      +E  +    +R +  +   T     T  ++ ++
Sbjct: 58  EKASIEVVWKPM---TGQIGK------QEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL--- 486
             +DGS     +     AL+ AG+P+      I  G+++DG+  +IL     +E  L   
Sbjct: 109 VGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE--VILDTNKAEEQQLKSF 166

Query: 487 GHMDF 491
            H+ F
Sbjct: 167 AHLVF 171


>gi|167841227|ref|ZP_02467911.1| 30S ribosomal protein S1 [Burkholderia thailandensis MSMB43]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|74316974|ref|YP_314714.1| 30S ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259]
 gi|74056469|gb|AAZ96909.1| ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259]
          Length = 573

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 286 PQGTRMF-GKVANLTDYGAFVEIEEGIEGLVHVSEMDWTNKNVSPSKIVQLGDEVEVMVL 344

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D D+ +I L MK    N
Sbjct: 345 DIDEDKRRISLGMKQCKSN 363



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++  RV   ++VV  G  +  K+L +D ++
Sbjct: 205 IVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVKHPTEVVHVGQELEAKILRYDTEK 263

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 264 NRVSLGLK 271


>gi|89069005|ref|ZP_01156386.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
 gi|89045374|gb|EAR51439.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
          Length = 561

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVK 673
           PE  ++ +G+V  + +FG FV   G  DG+VH+S L+ E   +  DV+   ++GD V  K
Sbjct: 367 PEGTEV-EGEVKNITEFGLFVGLEGDIDGMVHLSDLTWE--GRGEDVIGDYRKGDVVKAK 423

Query: 674 LLDFD-DRGKIKLSMKVVD 691
           +L+ D D+ +I LS+K +D
Sbjct: 424 VLEVDTDKERISLSIKALD 442



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +  +++GQ V      + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+
Sbjct: 191 IGNLHEGQAVDGVVKNITEYGAFVDLGGV-DGLLHVTDMAWRRVNHPSEILSIGETVKVQ 249

Query: 674 LLDFD-DRGKIKLSMK 688
           ++  + +  +I L MK
Sbjct: 250 VIKINKETHRISLGMK 265



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LDSVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D+ + ++ L +K   +N
Sbjct: 341 DEAKRRVSLGLKQTMRN 357


>gi|150395238|ref|YP_001325705.1| ribonuclease PH [Sinorhizobium medicae WSM419]
 gi|166228322|sp|A6U5E0|RNPH_SINMW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150026753|gb|ABR58870.1| ribonuclease PH [Sinorhizobium medicae WSM419]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 16/148 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L         D + G  R
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASL--------EDKVPGWLR 52

Query: 372 ND----FMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTL 423
           N         Y  LP ATGE  R  A + ++ G      RL  R++  V+   A     +
Sbjct: 53  NGGKGWVTAEYGMLPRATGERMRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQI 112

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA 451
            +  ++ ++DG +  A++ G+ +AL D 
Sbjct: 113 SVDCDVIQADGGTRTASITGAWIALHDC 140


>gi|332884599|gb|EGK04856.1| hypothetical protein HMPREF9456_00609 [Dysgonomonas mossii DSM
           22836]
          Length = 598

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 188 NVVVSHKALIEAELEQQK-KDIISKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 245

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           LS  RV    +VVK  + + V +LDF DD+ +I L +K
Sbjct: 246 LSWGRVQHPEEVVKLDEKINVVILDFDDDKKRIALGLK 283



 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D D  
Sbjct: 304 KGRVVVMADYGAFIEIAPGVEGLIHVSEMSWAQHLRSAQDFMKVGDEVEAVVLTLDRDER 363

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 364 KMSLGIK 370


>gi|332284738|ref|YP_004416649.1| transcription accessory protein [Pusillimonas sp. T7-7]
 gi|330428691|gb|AEC20025.1| transcription accessory protein [Pusillimonas sp. T7-7]
          Length = 571

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++
Sbjct: 204 VVKGVVKNITDYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEK 262

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 263 SRVSLGVK 270



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +      VV  GD V V +L
Sbjct: 285 PQGTRLF-GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGDEVEVMVL 343

Query: 676 DFD-DRGKIKLSMK 688
           + D DR +I L MK
Sbjct: 344 EIDEDRRRISLGMK 357



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG FV   G  DGLVH+S LS TE   +     K+GD +   +L  D D+ 
Sbjct: 378 RGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTETGEEAVRNFKKGDEIDAVVLGIDTDKE 437

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 438 RISLGIK---QLEGDPF 451


>gi|312795455|ref|YP_004028377.1| SSU ribosomal protein S1P [Burkholderia rhizoxinica HKI 454]
 gi|312167230|emb|CBW74233.1| SSU ribosomal protein S1P [Burkholderia rhizoxinica HKI 454]
          Length = 598

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 311 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 369

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 370 EIDEDRRRISLGMKQCKPN 388



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 230 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 288

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 289 NRVSLGIK 296



 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 405 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSESGEEAVRKYKKGDEVEAMVLGIDVEKER 464

Query: 683 IKLSMK 688
           I L +K
Sbjct: 465 ISLGIK 470


>gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
 gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 23/198 (11%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL  A       G+    PI + VA I++G+V      + L D+  
Sbjct: 125 DGGTRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISVGIVGG----VPLLDLDY 180

Query: 482 DEDHLGHMDFKVAGTDSG 499
            ED     D  +  T SG
Sbjct: 181 PEDSGCDSDVNIVMTASG 198


>gi|150400166|ref|YP_001323933.1| DNA-directed RNA polymerase subunit E' [Methanococcus vannielii SB]
 gi|150012869|gb|ABR55321.1| DNA-directed RNA polymerase [Methanococcus vannielii SB]
          Length = 188

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 20/101 (19%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTS 661
           +T VPE++++ +G++V V++FGAF+   G  DGL+HISQ+  + V+           +T 
Sbjct: 75  LTYVPELHEVVEGEIVDVVEFGAFIR-LGPLDGLIHISQIMDDFVSFDPKREAIIGKETG 133

Query: 662 DVVKEGD-----TVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
            V+++GD      V V L +   RG KI L+M+   Q+ GK
Sbjct: 134 KVLEKGDFVRARIVAVSLKEEKKRGSKIALTMR--QQSLGK 172


>gi|53720125|ref|YP_109111.1| 30S ribosomal protein S1 [Burkholderia pseudomallei K96243]
 gi|53724787|ref|YP_102241.1| 30S ribosomal protein S1 [Burkholderia mallei ATCC 23344]
 gi|67642915|ref|ZP_00441666.1| 30S ribosomal protein S1 [Burkholderia mallei GB8 horse 4]
 gi|76809559|ref|YP_334373.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1710b]
 gi|83719745|ref|YP_442175.1| 30S ribosomal protein S1 [Burkholderia thailandensis E264]
 gi|121599264|ref|YP_993874.1| 30S ribosomal protein S1 [Burkholderia mallei SAVP1]
 gi|124384139|ref|YP_001026937.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10229]
 gi|126441941|ref|YP_001059901.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 668]
 gi|126450751|ref|YP_001079776.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10247]
 gi|126454931|ref|YP_001067190.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106a]
 gi|134277319|ref|ZP_01764034.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 305]
 gi|166999732|ref|ZP_02265566.1| 30S ribosomal protein S1 [Burkholderia mallei PRL-20]
 gi|167581053|ref|ZP_02373927.1| 30S ribosomal protein S1 [Burkholderia thailandensis TXDOH]
 gi|167619131|ref|ZP_02387762.1| 30S ribosomal protein S1 [Burkholderia thailandensis Bt4]
 gi|167720666|ref|ZP_02403902.1| 30S ribosomal protein S1 [Burkholderia pseudomallei DM98]
 gi|167739654|ref|ZP_02412428.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 14]
 gi|167816859|ref|ZP_02448539.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 91]
 gi|167825259|ref|ZP_02456730.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 9]
 gi|167846763|ref|ZP_02472271.1| 30S ribosomal protein S1 [Burkholderia pseudomallei B7210]
 gi|167895351|ref|ZP_02482753.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 7894]
 gi|167903737|ref|ZP_02490942.1| 30S ribosomal protein S1 [Burkholderia pseudomallei NCTC 13177]
 gi|167911986|ref|ZP_02499077.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 112]
 gi|167919977|ref|ZP_02507068.1| 30S ribosomal protein S1 [Burkholderia pseudomallei BCC215]
 gi|217421085|ref|ZP_03452590.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 576]
 gi|226197856|ref|ZP_03793430.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pakistan 9]
 gi|237813295|ref|YP_002897746.1| ribosomal protein S1 [Burkholderia pseudomallei MSHR346]
 gi|242316257|ref|ZP_04815273.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106b]
 gi|254176819|ref|ZP_04883476.1| 30S ribosomal protein S1 [Burkholderia mallei ATCC 10399]
 gi|254181089|ref|ZP_04887687.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1655]
 gi|254192045|ref|ZP_04898545.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pasteur 52237]
 gi|254195641|ref|ZP_04902068.1| 30S ribosomal protein S1 [Burkholderia pseudomallei S13]
 gi|254203925|ref|ZP_04910285.1| 30S ribosomal protein S1 [Burkholderia mallei FMH]
 gi|254208905|ref|ZP_04915253.1| 30S ribosomal protein S1 [Burkholderia mallei JHU]
 gi|254258613|ref|ZP_04949667.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1710a]
 gi|254295621|ref|ZP_04963079.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 406e]
 gi|254360040|ref|ZP_04976310.1| 30S ribosomal protein S1 [Burkholderia mallei 2002721280]
 gi|257138364|ref|ZP_05586626.1| 30S ribosomal protein S1 [Burkholderia thailandensis E264]
 gi|52210539|emb|CAH36522.1| 30S ribosomal protein S1 [Burkholderia pseudomallei K96243]
 gi|52428210|gb|AAU48803.1| ribosomal protein S1 [Burkholderia mallei ATCC 23344]
 gi|76579012|gb|ABA48487.1| ribosomal protein S1 [Burkholderia pseudomallei 1710b]
 gi|83653570|gb|ABC37633.1| ribosomal protein S1 [Burkholderia thailandensis E264]
 gi|121228074|gb|ABM50592.1| 30S ribosomal protein S1 [Burkholderia mallei SAVP1]
 gi|124292159|gb|ABN01428.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10229]
 gi|126221434|gb|ABN84940.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 668]
 gi|126228573|gb|ABN92113.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106a]
 gi|126243621|gb|ABO06714.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10247]
 gi|134250969|gb|EBA51048.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 305]
 gi|147745437|gb|EDK52517.1| 30S ribosomal protein S1 [Burkholderia mallei FMH]
 gi|147750781|gb|EDK57850.1| 30S ribosomal protein S1 [Burkholderia mallei JHU]
 gi|148029280|gb|EDK87185.1| 30S ribosomal protein S1 [Burkholderia mallei 2002721280]
 gi|157805534|gb|EDO82704.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 406e]
 gi|157987867|gb|EDO95632.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pasteur 52237]
 gi|160697860|gb|EDP87830.1| 30S ribosomal protein S1 [Burkholderia mallei ATCC 10399]
 gi|169652387|gb|EDS85080.1| 30S ribosomal protein S1 [Burkholderia pseudomallei S13]
 gi|184211628|gb|EDU08671.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1655]
 gi|217396497|gb|EEC36514.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 576]
 gi|225930044|gb|EEH26057.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pakistan 9]
 gi|237504090|gb|ACQ96408.1| ribosomal protein S1 [Burkholderia pseudomallei MSHR346]
 gi|238524132|gb|EEP87567.1| 30S ribosomal protein S1 [Burkholderia mallei GB8 horse 4]
 gi|242139496|gb|EES25898.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106b]
 gi|243064225|gb|EES46411.1| 30S ribosomal protein S1 [Burkholderia mallei PRL-20]
 gi|254217302|gb|EET06686.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1710a]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|171780107|ref|ZP_02921011.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281455|gb|EDT46890.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 710

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VV 664
           R+ +  I+D+ E+ +  +G V  V+DFGAFV      DGL+HISQ+S   V   S    V
Sbjct: 623 RQDVLDISDL-EIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSV 681

Query: 665 KEGDTVWVKLLDFDDRGKIKLSM 687
            +  TVWV  +D  +RGKI LS+
Sbjct: 682 GDVVTVWVSKID-KERGKINLSL 703


>gi|332828388|gb|EGK01097.1| hypothetical protein HMPREF9455_02619 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 601

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 188 NVVVSHKALIEAELEQQK-KDIISKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 245

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           LS  RV    +VVK  + + V +LDF DD+ +I L +K
Sbjct: 246 LSWGRVQHPEEVVKLDEKINVVILDFDDDKKRIALGLK 283



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D D  
Sbjct: 304 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWAQHLRSAQDFMKVGDEVEAVVLTLDRDER 363

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 364 KMSLGIK 370


>gi|300071231|gb|ADJ60631.1| general stress protein GSP13 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 143

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA---------RDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFFLQNPETNEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             +  +++D D+  GKI LS++ +++N
Sbjct: 66  QKIMAQIIDIDEYNGKISLSIRSLEKN 92


>gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C]
 gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     +      E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T       S  G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTSEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIV----DGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+  +ED     D  V  T  G
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDG 198


>gi|134295079|ref|YP_001118814.1| 30S ribosomal protein S1 [Burkholderia vietnamiensis G4]
 gi|134138236|gb|ABO53979.1| SSU ribosomal protein S1P [Burkholderia vietnamiensis G4]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 384 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 443

Query: 683 IKLSMK 688
           I L +K
Sbjct: 444 ISLGIK 449


>gi|71066049|ref|YP_264776.1| 30S ribosomal protein S1 [Psychrobacter arcticus 273-4]
 gi|71039034|gb|AAZ19342.1| SSU ribosomal protein S1P [Psychrobacter arcticus 273-4]
          Length = 563

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + D+GAFV   G  DGL+HI+ ++  R+   S+VV+ G  + VK+L FD +R +
Sbjct: 197 EGIVKNLTDYGAFVDLGGI-DGLLHITDMAWRRIKHPSEVVEVGQDLKVKVLKFDRERNR 255

Query: 683 IKLSMK 688
           + L +K
Sbjct: 256 VSLGLK 261



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +LD 
Sbjct: 277 VGSVVKARVTNLTDYGCFAEISEGIEGLVHVSEMDHTNKNIHPSKVVQVGDEVEVMILDI 336

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 337 DEERRRISLGIK 348


>gi|260424827|ref|ZP_05733404.2| hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1
           [Dialister invisus DSM 15470]
 gi|260403304|gb|EEW96851.1| hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1
           [Dialister invisus DSM 15470]
          Length = 658

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V K+M +GAFV   G  +GL+HIS +S  +++K  DV++    + VK+  F
Sbjct: 480 ENGEVLKGTVKKIMPYGAFVALNGI-EGLLHISDVSWRKISKVEDVLQPEQVIDVKIKSF 538

Query: 678 D-DRGKIKLSMK 688
           D ++ +I  S K
Sbjct: 539 DREKQRISFSHK 550



 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV+ I   +VVK+++FG  V       GL+HI++++ +   K  D+ + GD + V+++  
Sbjct: 565 EVDDIVGARVVKILEFGVIVELEDGLTGLLHINEMTQDHNKKPGDICRVGDDLTVRIIGI 624

Query: 678 DD-RGKIKLSM 687
           D+ R +I  S+
Sbjct: 625 DEARKRISFSL 635


>gi|227820597|ref|YP_002824567.1| ribonuclease PH [Sinorhizobium fredii NGR234]
 gi|254808598|sp|C3MEJ1|RNPH_RHISN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|227339596|gb|ACP23814.1| ribonuclease PH [Sinorhizobium fredii NGR234]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +++    L    +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASL----EDKVPAWLRNGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  R  A + ++ G      RL  R++  V+   A     + I  
Sbjct: 57  GWITAEYGMLPRATGERMRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD 450
           ++ ++DG +  A++ G+ +AL D
Sbjct: 117 DVIQADGGTRTASITGAWIALHD 139


>gi|163742618|ref|ZP_02150004.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
 gi|161384203|gb|EDQ08586.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
          Length = 237

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+ + +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRNLDQMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R    MG    R +   RL  RA+   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM  G     P+  PVA ++ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKTGEVKIDPLVDPVAAVSCGI 166


>gi|317968718|ref|ZP_07970108.1| 30S ribosomal protein S1 [Synechococcus sp. CB0205]
          Length = 354

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 241 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHTVLNVNDQMKVMIIDL 299

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 300 DAERGRISLSTKALEPEPG 318


>gi|299142654|ref|ZP_07035784.1| ribosomal protein S1 [Prevotella oris C735]
 gi|298575869|gb|EFI47745.1| ribosomal protein S1 [Prevotella oris C735]
          Length = 593

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA ++ I S     E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQKKEIISHL---EKGQVLEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +VV     + V +LDFD D+ +I L +K
Sbjct: 253 HEVVALDQKINVVILDFDEDKKRIALGLK 281



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +  GD V   +L  D D  
Sbjct: 302 KGKVVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMHVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWEAI 378


>gi|330815897|ref|YP_004359602.1| 30S ribosomal protein S1 [Burkholderia gladioli BSR3]
 gi|327368290|gb|AEA59646.1| 30S ribosomal protein S1 [Burkholderia gladioli BSR3]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 472 VVKTVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 531

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 532 LSIKAKD 538



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 384 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSESGEEAVRKYKKGDEVEAIVLGIDVEKER 443

Query: 683 IKLSMK 688
           I L +K
Sbjct: 444 ISLGIK 449


>gi|314936825|ref|ZP_07844172.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655444|gb|EFS19189.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
          Length = 127

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKL 71

Query: 684 KLSMK 688
            LS+K
Sbjct: 72  NLSLK 76


>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 24/185 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLSGT 369
           R DGR+   +R  S     L R HGS+ + +GDT  +  V     GTR+ E         
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGEN-------P 57

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           ++    + +  +   TG++ +      +E  +    +R +  +   T     T  ++ ++
Sbjct: 58  EKASIEVVWKPM---TGQIGK------QEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL--- 486
             +DGS     +     AL+ AG+P+      I  G+++DG+  +IL     +E  L   
Sbjct: 109 VGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE--VILDTNKAEEQQLKSF 166

Query: 487 GHMDF 491
            H+ F
Sbjct: 167 AHLVF 171


>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
 gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
          Length = 257

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 76  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 135

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  GD   +L
Sbjct: 136 DVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGIL-GGD---VL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 192 CDLEYVEDSAADTDMNVVMTEEG 214


>gi|70726996|ref|YP_253910.1| hypothetical protein SH1995 [Staphylococcus haemolyticus JCSC1435]
 gi|68447720|dbj|BAE05304.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 126

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKL 71

Query: 684 KLSMK 688
            LS+K
Sbjct: 72  NLSLK 76


>gi|310779520|ref|YP_003967853.1| RNA binding S1 domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748843|gb|ADO83505.1| RNA binding S1 domain protein [Ilyobacter polytropus DSM 2926]
          Length = 536

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           +V  ++DFG  V   G  +G +HIS+LS  +V K SD+ K GD +  K++  D   K +K
Sbjct: 195 EVKNILDFGISVR-VGKSNGFIHISELSWGKVDKISDIYKTGDKLQAKIISLDKEKKSLK 253

Query: 685 LSMKVVDQN 693
           LS+K + Q+
Sbjct: 254 LSVKQLTQD 262



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 29/202 (14%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           +M+  +++ +RG+  ++++    L E     GEF  ++ +  +   +++N++  G  V  
Sbjct: 153 VMIKDVKEDRRGKKILVSKKDIRLKEQ----GEFFNKLNLGDVMEVEVKNILDFGISVRV 208

Query: 576 G-------IVEQTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           G       I E +  KV+         D    KI S    E ++ +  ++ +T  P V  
Sbjct: 209 GKSNGFIHISELSWGKVDKISDIYKTGDKLQAKIISLD-KEKKSLKLSVKQLTQDPWVTA 267

Query: 622 IYK--------GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
             K        G+V K++ FGAFV      +GLVH+S  +  ++    S+ VK GD V V
Sbjct: 268 DEKYPVGTEIEGKVTKLVSFGAFVELEEGVEGLVHLSDFTWNKKKINVSEFVKVGDIVKV 327

Query: 673 KLLDFDDRGK-IKLSMKVVDQN 693
           K+++ D   K +K  +K + +N
Sbjct: 328 KVIEMDKPAKRLKFGIKQLSEN 349



 Score = 40.4 bits (93), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIE---AAREMIRSITDV----PEVNKIYKGQVVKVM 631
           E+T  +  I D+  +K+ S   +E +     +++++S  D      +V  I   ++  + 
Sbjct: 396 EKTQPRYEIGDEVELKVLSFDASEKKIKGGIKQLVKSPWDSLIENYKVGDIVDRKITSIT 455

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DFG FV      DG++H SQ S + +   SD  + G+ V  ++++ D  + ++KLS+K
Sbjct: 456 DFGLFVEMEKGVDGMIHASQASKDFIKNLSDRFEVGEEVKAEIIEIDTGKKRVKLSIK 513


>gi|255034878|ref|YP_003085499.1| RNA binding S1 domain-containing protein [Dyadobacter fermentans
           DSM 18053]
 gi|254947634|gb|ACT92334.1| RNA binding S1 domain protein [Dyadobacter fermentans DSM 18053]
          Length = 705

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V  +  FGAFV     +DGLVH+SQ++ + V   ++VVK    V VK+ + 
Sbjct: 633 KVGMVLPGIVTNITAFGAFVDVGVKQDGLVHVSQMAEKFVKDPNEVVKLQQHVTVKVTEV 692

Query: 678 D-DRGKIKLSMKV 689
           D  R +I LSMK+
Sbjct: 693 DLARKRIALSMKL 705


>gi|162218058|ref|YP_620452.2| 30S ribosomal protein S1 [Burkholderia cenocepacia AU 1054]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 466 VVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 525

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 526 LSIKAKD 532



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|161702964|ref|YP_368401.2| 30S ribosomal protein S1 [Burkholderia sp. 383]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 466 VVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 525

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 526 LSIKAKD 532



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|228474295|ref|ZP_04059030.1| general stress protein 13 [Staphylococcus hominis SK119]
 gi|228271654|gb|EEK13001.1| general stress protein 13 [Staphylococcus hominis SK119]
          Length = 127

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKL 71

Query: 684 KLSMK 688
            LS+K
Sbjct: 72  NLSLK 76


>gi|159184261|ref|NP_353359.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
 gi|21759397|sp|Q8UIG8|RNPH_AGRT5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|159139588|gb|AAK86144.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +V  +L    +E+    L  + +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +  A S ++ G      RL  R++  V+   A     + I  
Sbjct: 57  GWVTAEYGMLPRSTNERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWIALHDC 140


>gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222]
 gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222]
          Length = 241

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R IS + G+++   GS L   GDT+ +   ++    +E+    L G+ +
Sbjct: 2   MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSASI----EEKAPPFLKGSGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + + A     + +  
Sbjct: 58  GWVTAEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
           ++ ++DG +  A + G  +A       L+ AG+    PI   VA ++ G+
Sbjct: 118 DVIQADGGTRCAAITGGWVALRLAMNKLLKAGIVTADPIMDHVAAVSCGI 167


>gi|315185614|gb|EFU19382.1| cytidylate kinase [Spirochaeta thermophila DSM 6578]
          Length = 800

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V     FGAF+   G  DGL+H+  +S  R  +  D VK+G+ V VK++  D ++
Sbjct: 432 IVEGVVKSFAPFGAFIDL-GGFDGLLHLQDMSWGRAVRPKDYVKKGEKVRVKIIKMDREQ 490

Query: 681 GKIKLSMKVVDQN 693
            K+ LS+K + ++
Sbjct: 491 QKVNLSLKALKED 503



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + +G V K+M FGAFV      +GLVHIS++S  + +    +V+K G  +  K+LD+D +
Sbjct: 517 VVEGVVTKLMPFGAFVEIEEGIEGLVHISEMSWVKTIEHPKEVLKRGARIQAKILDYDIE 576

Query: 680 RGKIKLSMKVVDQN 693
             ++ L ++ +  N
Sbjct: 577 ERRLSLGIRQLQAN 590


>gi|312794043|ref|YP_004026966.1| ribonuclease ph [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181183|gb|ADQ41353.1| ribonuclease PH [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 258

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +   D G
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKG 195


>gi|302871436|ref|YP_003840072.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
 gi|302574295|gb|ADL42086.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
          Length = 258

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +       R  G      RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  +   D G
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKG 195


>gi|296159962|ref|ZP_06842782.1| ribosomal protein S1 [Burkholderia sp. Ch1-1]
 gi|295889708|gb|EFG69506.1| ribosomal protein S1 [Burkholderia sp. Ch1-1]
          Length = 577

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ 
Sbjct: 383 QGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|167563628|ref|ZP_02356544.1| 30S ribosomal protein S1 [Burkholderia oklahomensis EO147]
 gi|167570790|ref|ZP_02363664.1| 30S ribosomal protein S1 [Burkholderia oklahomensis C6786]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|93006497|ref|YP_580934.1| 30S ribosomal protein S1 [Psychrobacter cryohalolentis K5]
 gi|92394175|gb|ABE75450.1| SSU ribosomal protein S1P [Psychrobacter cryohalolentis K5]
          Length = 563

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + D+GAFV   G  DGL+HI+ ++  R+   S+VV+ G  + VK+L FD +R +
Sbjct: 197 EGIVKNLTDYGAFVDLGGI-DGLLHITDMAWRRIKHPSEVVEVGQDLKVKVLKFDRERNR 255

Query: 683 IKLSMK 688
           + L +K
Sbjct: 256 VSLGLK 261



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +LD 
Sbjct: 277 VGSVVKARVTNLTDYGCFAEISEGIEGLVHVSEMDHTNKNIHPSKVVQVGDEVEVMILDI 336

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 337 DEERRRISLGIK 348


>gi|304413132|ref|ZP_07394605.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
 gi|304283975|gb|EFL92368.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 23/197 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+ GR +E VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRLAGRAAEQVRPLTLTRHYTKYAEGSVLVEFGDTKVLCTATI----EEGIPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++   +       +T+ I  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+S+AL DA             P+   VA I++G+VK+      L
Sbjct: 117 DVLQADGGTRTAAISGASVALADALEKAVIKKKLKKNPMRGLVAAISVGIVKNE----AL 172

Query: 477 SDISGDEDHLGHMDFKV 493
            D+   ED     D  V
Sbjct: 173 GDLEYTEDANAETDMNV 189


>gi|296160047|ref|ZP_06842867.1| ribonuclease PH [Burkholderia sp. Ch1-1]
 gi|295889793|gb|EFG69591.1| ribonuclease PH [Burkholderia sp. Ch1-1]
          Length = 246

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTNNTQRPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|238026536|ref|YP_002910767.1| 30S ribosomal protein S1 [Burkholderia glumae BGR1]
 gi|237875730|gb|ACR28063.1| Ribosomal protein S1 [Burkholderia glumae BGR1]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 472 VVKSVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 531

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 532 LSIKAKD 538



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 384 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSESGEEAVRKYKKGDEVEAIVLGIDVEKER 443

Query: 683 IKLSMK 688
           I L +K
Sbjct: 444 ISLGIK 449


>gi|34558836|gb|AAQ75180.1| 30S ribosomal protein S1 [Alvinella pompejana epibiont 7G3]
          Length = 556

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I KG++  + DFGAFV      +GL+H  ++S ++ A   + +K+GD V  K++  D
Sbjct: 371 VGDIVKGKISSITDFGAFVKIDDI-EGLIHNQEVSWDKSATAKNSLKKGDEVEAKIIKID 429

Query: 679 -DRGKIKLSMKVVDQN 693
            + GKI LS K ++++
Sbjct: 430 IENGKISLSKKALEES 445



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRSITDVPEVNK-IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           IE  ++ I+ I D    +K +  G V K+  +G FV   G  DGLVH S++S +     +
Sbjct: 182 IEREKKEIQEIVDKLLTDKAVVLGTVKKITSYGMFVD-VGGLDGLVHYSKISHKGPVNPA 240

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
              KEGD V V  +DFD + K + LS+K
Sbjct: 241 KHFKEGDEVNVVAIDFDKKKKHLSLSIK 268


>gi|325520510|gb|EGC99606.1| 30S ribosomal protein S1 [Burkholderia sp. TJI49]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|313673962|ref|YP_004052073.1| tex-like protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940718|gb|ADR19910.1| Tex-like protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 710

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V  ++DFG FV       G +HIS+LS   +   S +++ G+ +  K+   D +R
Sbjct: 638 IIDGKVTNIVDFGVFVDIGLKESGFIHISELSDRYIKHPSHILEVGNKIKAKIKSIDMER 697

Query: 681 GKIKLSMKVVDQN 693
            +I LS K +++N
Sbjct: 698 KRISLSKKGINEN 710


>gi|206561285|ref|YP_002232050.1| 30S ribosomal protein S1 [Burkholderia cenocepacia J2315]
 gi|198037327|emb|CAR53252.1| 30S ribosomal protein S1 [Burkholderia cenocepacia J2315]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 466 VVKTVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 525

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 526 LSIKAKD 532


>gi|254245991|ref|ZP_04939312.1| Ribosomal protein S1 [Burkholderia cenocepacia PC184]
 gi|124870767|gb|EAY62483.1| Ribosomal protein S1 [Burkholderia cenocepacia PC184]
          Length = 596

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 310 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 368

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 369 EIDEDRRRISLGMKQCKPN 387



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 229 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 287

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 288 NRVSLGIK 295



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 492 VVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 551

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 552 LSIKAKD 558


>gi|161525427|ref|YP_001580439.1| 30S ribosomal protein S1 [Burkholderia multivorans ATCC 17616]
 gi|189349836|ref|YP_001945464.1| 30S ribosomal protein S1 [Burkholderia multivorans ATCC 17616]
 gi|221201261|ref|ZP_03574301.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2M]
 gi|221206285|ref|ZP_03579298.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2]
 gi|221213566|ref|ZP_03586540.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD1]
 gi|160342856|gb|ABX15942.1| ribosomal protein S1 [Burkholderia multivorans ATCC 17616]
 gi|189333858|dbj|BAG42928.1| small subunit ribosomal protein S1 [Burkholderia multivorans ATCC
           17616]
 gi|221166355|gb|EED98827.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD1]
 gi|221173594|gb|EEE06028.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2]
 gi|221179111|gb|EEE11518.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2M]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|187924977|ref|YP_001896619.1| 30S ribosomal protein S1 [Burkholderia phytofirmans PsJN]
 gi|91688765|gb|ABE31965.1| SSU ribosomal protein S1P [Burkholderia xenovorans LB400]
 gi|187716171|gb|ACD17395.1| ribosomal protein S1 [Burkholderia phytofirmans PsJN]
          Length = 577

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ 
Sbjct: 383 QGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|83719437|ref|YP_442125.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|167580996|ref|ZP_02373870.1| ribonuclease PH [Burkholderia thailandensis TXDOH]
 gi|167619073|ref|ZP_02387704.1| ribonuclease PH [Burkholderia thailandensis Bt4]
 gi|257138313|ref|ZP_05586575.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|123537265|sp|Q2SY74|RNPH_BURTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83653262|gb|ABC37325.1| ribonuclease PH [Burkholderia thailandensis E264]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   G+T+ I   ++  R  E   +  
Sbjct: 1   MTNSSPRPSGRRADQLRDVRITRHYTKHAEGSVLVEFGETKVICTASVVERVPEFLRERG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGKIARSPITDYVAAISVGVFGGAP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
               + D+  DED     D  V  T +G
Sbjct: 177 ----VLDLDYDEDSACDTDMNVVMTGAG 200


>gi|281425226|ref|ZP_06256139.1| ribosomal protein S1 [Prevotella oris F0302]
 gi|281400692|gb|EFB31523.1| ribosomal protein S1 [Prevotella oris F0302]
          Length = 593

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA ++ I S     E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQKKEIISHL---EKGQVLEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +VV     + V +LDFD D+ +I L +K
Sbjct: 253 HEVVALDQKINVVILDFDEDKKRIALGLK 281



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +  GD V   +L  D D  
Sbjct: 302 KGKVVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMHVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWEAI 378


>gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|226736942|sp|B1VVV6|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP +T       A  R +IG       RL  R++  V+   A    T+ +  
Sbjct: 59  WVTAEYSMLPRSTNTRGDREA-VRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL DA               P++  VA I++G+V    D  
Sbjct: 118 DVLQADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIV----DGT 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            L D+  +ED     D  V  T  G
Sbjct: 174 PLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|170693719|ref|ZP_02884877.1| ribosomal protein S1 [Burkholderia graminis C4D1M]
 gi|170141501|gb|EDT09671.1| ribosomal protein S1 [Burkholderia graminis C4D1M]
          Length = 577

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ 
Sbjct: 383 QGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
 gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 35/208 (16%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R+I+          GS L   GDT+ I   ++    ++     L GT + 
Sbjct: 3   RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASV----EKNVPHFLRGTGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--IHPVLPQTAQFPYTLRIVSE-- 428
                Y  LP +TG+  RMG    RE   G+   R   I  ++ ++ +    L+++ E  
Sbjct: 59  WITAEYGMLPRSTGD--RMG----REAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQ 112

Query: 429 ------ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
                 + ++DG +  A++ G+ +AL+DA           G P+   +A +++G+ +   
Sbjct: 113 ITIDCDVIQADGGTRTASITGACVALVDAITAMREQGIITGNPLKHMIAAVSVGIYQG-- 170

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
               + D+   ED     D  V  T+ G
Sbjct: 171 --TAVLDLDYAEDSNAETDMNVIMTEQG 196


>gi|310643658|ref|YP_003948416.1| ribonuclease ph:ham1-like protein [Paenibacillus polymyxa SC2]
 gi|309248608|gb|ADO58175.1| Ribonuclease PH:Ham1-like protein [Paenibacillus polymyxa SC2]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR+ + +R +    G+ +   GS     G+T+ I   T+    +E+    + G  + 
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATV----EERVPPFMKGQGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP AT      E +R G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 59  WVTAEYSMLPRATHSRNQREAAR-GKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ GS +AL  A             PI+  +A +++G+V D      L
Sbjct: 118 DVIQADGGTRTTSITGSFVALAIAVNKIAIQHKLPVFPITDFLASVSVGVVGDK----AL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  +  T SG
Sbjct: 174 LDLNYEEDSKAKVDMNLVMTGSG 196


>gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
 gi|306532508|gb|ADN02042.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
          Length = 800

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V     FGAF+   G  DGL+H+  +S  R  +  D VK+G+ V VK++  D ++
Sbjct: 432 IVEGVVKSFAPFGAFIDL-GGFDGLLHLQDMSWGRAVRPKDYVKKGEKVRVKIIKMDREQ 490

Query: 681 GKIKLSMKVVDQN 693
            K+ LS+K + ++
Sbjct: 491 QKVNLSLKALKED 503



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + +G V K+M FGAFV      +GLVHIS++S  + +    +V+K G  +  K+LD+D  
Sbjct: 517 VVEGVVTKLMPFGAFVEIEEGIEGLVHISEMSWVKTIEHPKEVLKRGAKIQAKILDYDIQ 576

Query: 680 RGKIKLSMKVVDQN 693
             ++ L ++ + +N
Sbjct: 577 ERRLSLGIRQLQEN 590


>gi|227535276|ref|ZP_03965325.1| S1 domain RNA-binding protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187160|gb|EEI67227.1| S1 domain RNA-binding protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS+++ + V     VV  GD   VW++ +D   R 
Sbjct: 660 EGTVRNVVDFGAFVDIGVKHDGLVHISKMARKFVRDPKTVVAIGDIVEVWIESVDL-ARE 718

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 719 RIQLTM 724


>gi|209519344|ref|ZP_03268143.1| ribosomal protein S1 [Burkholderia sp. H160]
 gi|295677277|ref|YP_003605801.1| ribosomal protein S1 [Burkholderia sp. CCGE1002]
 gi|209500228|gb|EEA00285.1| ribosomal protein S1 [Burkholderia sp. H160]
 gi|295437120|gb|ADG16290.1| ribosomal protein S1 [Burkholderia sp. CCGE1002]
          Length = 577

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V  V   GA V   G  +G +  S+++ +RV    +V+KEGD V   +++ D + 
Sbjct: 468 VVDGTVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDARNVLKEGDKVNAMIINIDRKS 527

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 528 RGINLSIKAKD 538



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 384 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKER 443

Query: 683 IKLSMK 688
           I L +K
Sbjct: 444 ISLGIK 449


>gi|167586532|ref|ZP_02378920.1| 30S ribosomal protein S1 [Burkholderia ubonensis Bu]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 378 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSEAGEEAVRKYKKGDEVEAIVLGIDVEKER 437

Query: 683 IKLSMK 688
           I L +K
Sbjct: 438 ISLGIK 443


>gi|125718638|ref|YP_001035771.1| hypothetical protein SSA_1840 [Streptococcus sanguinis SK36]
 gi|125498555|gb|ABN45221.1| RNA binding protein, putative [Streptococcus sanguinis SK36]
 gi|324991968|gb|EGC23890.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405]
 gi|324994065|gb|EGC25979.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678]
 gi|325686910|gb|EGD28934.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72]
 gi|325688788|gb|EGD30797.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115]
 gi|325695230|gb|EGD37131.1| S1 RNA binding domain protein [Streptococcus sanguinis SK150]
 gi|325697716|gb|EGD39601.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160]
 gi|327459271|gb|EGF05617.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1]
 gi|327467204|gb|EGF12708.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330]
 gi|327472697|gb|EGF18124.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408]
 gi|327490489|gb|EGF22270.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058]
 gi|328945023|gb|EGG39179.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087]
 gi|332358066|gb|EGJ35899.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056]
 gi|332362994|gb|EGJ40783.1| S1 RNA binding domain protein [Streptococcus sanguinis SK49]
          Length = 120

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D+D+  GK
Sbjct: 8   KGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKIGQQVLVQVVDYDEFSGK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  SSLSMRTLEE 77


>gi|170698415|ref|ZP_02889488.1| ribosomal protein S1 [Burkholderia ambifaria IOP40-10]
 gi|172059982|ref|YP_001807634.1| 30S ribosomal protein S1 [Burkholderia ambifaria MC40-6]
 gi|170136668|gb|EDT04923.1| ribosomal protein S1 [Burkholderia ambifaria IOP40-10]
 gi|171992499|gb|ACB63418.1| ribosomal protein S1 [Burkholderia ambifaria MC40-6]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA +   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 472 VVKTVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 531

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 532 LSIKAKD 538


>gi|23099561|ref|NP_693027.1| ribonuclease PH [Oceanobacillus iheyensis HTE831]
 gi|61216060|sp|Q8EPJ5|RNPH_OCEIH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|22777791|dbj|BAC14062.1| ribonuclease PH (tRNA nucleotidyltransferase) [Oceanobacillus
           iheyensis HTE831]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R+   +R+I+     +    GS L   G+T+ I   ++    +++    + G  +
Sbjct: 1   MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASI----EDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATAQRNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A             PI   +A I++G++ +G + +  
Sbjct: 117 DVIQADGGTRTASITGAFVAMSLAFAKLVEAKTLKKTPIQDYLAAISVGVLTNGTEIL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  +  T  G
Sbjct: 175 -DLNYEEDSEAAVDMNIVMTGEG 196


>gi|307730620|ref|YP_003907844.1| 30S ribosomal protein S1 [Burkholderia sp. CCGE1003]
 gi|307585155|gb|ADN58553.1| ribosomal protein S1 [Burkholderia sp. CCGE1003]
          Length = 577

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S+++ +RV    +V+KEGD V   +++ D + + I 
Sbjct: 472 VVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDARNVLKEGDKVNAMIINIDRKSRGIN 531

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 532 LSIKAKD 538



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ 
Sbjct: 383 QGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|227486765|ref|ZP_03917081.1| S1 domain RNA-binding protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235235|gb|EEI85250.1| S1 domain RNA-binding protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 697

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG+V  + DFGAFV      DGLVH+S++S + V    D +     V V++++ 
Sbjct: 623 KVGMVLKGKVRNITDFGAFVDIGVGIDGLVHVSEISDKFVKNPHDELTNSQVVSVRIIEI 682

Query: 678 DDRG-KIKLSMK 688
           D +  +I LSM+
Sbjct: 683 DKKKERIGLSMR 694


>gi|116689070|ref|YP_834693.1| 30S ribosomal protein S1 [Burkholderia cenocepacia HI2424]
 gi|170732358|ref|YP_001764305.1| 30S ribosomal protein S1 [Burkholderia cenocepacia MC0-3]
 gi|105892314|gb|ABF75479.1| SSU ribosomal protein S1P [Burkholderia cenocepacia AU 1054]
 gi|116647159|gb|ABK07800.1| SSU ribosomal protein S1P [Burkholderia cenocepacia HI2424]
 gi|169815600|gb|ACA90183.1| ribosomal protein S1 [Burkholderia cenocepacia MC0-3]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 472 VVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 531

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 532 LSIKAKD 538


>gi|61215919|sp|Q6FFX5|RNPH_ACIAD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 238

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+DA             P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALIDAMNVLLEKKKIKQDPLKGLVAAISVGIYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|115350977|ref|YP_772816.1| 30S ribosomal protein S1 [Burkholderia ambifaria AMMD]
 gi|171316178|ref|ZP_02905402.1| ribosomal protein S1 [Burkholderia ambifaria MEX-5]
 gi|115280965|gb|ABI86482.1| SSU ribosomal protein S1P [Burkholderia ambifaria AMMD]
 gi|171098687|gb|EDT43482.1| ribosomal protein S1 [Burkholderia ambifaria MEX-5]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275


>gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11]
 gi|226736949|sp|B5FFE2|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 23/191 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD---DF 473
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G + +G+   D 
Sbjct: 117 DVIQADGGTRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVG-IYNGEAICDL 175

Query: 474 IILSDISGDED 484
             L D + D D
Sbjct: 176 EYLEDSAADTD 186


>gi|194477089|ref|YP_002049268.1| 30S ribosomal protein S1 [Paulinella chromatophora]
 gi|171192096|gb|ACB43058.1| 30S ribosomal protein S1 [Paulinella chromatophora]
          Length = 330

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D 
Sbjct: 212 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHEHIETPHTVLNVNDQMKVMIIDL 270

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 271 DAERGRISLSTKALEPEPG 289


>gi|77966377|gb|ABB07757.1| SSU ribosomal protein S1P [Burkholderia sp. 383]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVNGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 627 VVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VVK +D  GA V   G  +G +  S++S +RV    +V+KEGD V   +++ D + + I 
Sbjct: 472 VVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEGDKVNAMVINIDRKSRGIN 531

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 532 LSIKAKD 538



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ +
Sbjct: 384 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKER 443

Query: 683 IKLSMK 688
           I L +K
Sbjct: 444 ISLGIK 449


>gi|323526954|ref|YP_004229107.1| 30S ribosomal protein S1 [Burkholderia sp. CCGE1001]
 gi|323383956|gb|ADX56047.1| ribosomal protein S1 [Burkholderia sp. CCGE1001]
          Length = 577

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 290 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 348

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 349 EIDEDRRRISLGMKQCKPN 367



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 209 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 267

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 268 NRVSLGIK 275



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  V   GA V   G  +G +  S+++ +RV    +V+KEGD V   +++ D + 
Sbjct: 468 IVDGTVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDARNVLKEGDKVNAMIINIDRKS 527

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 528 RGINLSIKAKD 538



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ 
Sbjct: 383 QGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKE 442

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 443 RISLGIK 449


>gi|89900358|ref|YP_522829.1| 30S ribosomal protein S1 [Rhodoferax ferrireducens T118]
 gi|89345095|gb|ABD69298.1| SSU ribosomal protein S1P [Rhodoferax ferrireducens T118]
          Length = 566

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 199 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEK 257

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 258 NRVSLGLK 265



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G++  + D+GAFV      +GLVH+S++  T +    + +V  GD V V +L
Sbjct: 280 PQGTRMF-GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPAKIVALGDEVEVMVL 338

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 339 EIDEDKRRISLGMKQCKAN 357



 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 373 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNETGEAAVREYKKGQEVEALVLAVDVDRE 432

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 433 RISLGIKQLDSD 444


>gi|326502718|dbj|BAJ98987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 371

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGDTV V
Sbjct: 173 KIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKV 232

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +++ D ++ +I LS++ ++++
Sbjct: 233 IVVNVDAEKSRIGLSIRQLEED 254


>gi|298372981|ref|ZP_06982971.1| S1 RNA binding domain protein [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275885|gb|EFI17436.1| S1 RNA binding domain protein [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 704

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FGAFV       GL+HISQLS  R+   +DVV     V V +L+ D +R +I
Sbjct: 640 GIVTNITKFGAFVDIGIHLSGLIHISQLSANRINDPTDVVHINQHVTVTVLEVDTERKRI 699

Query: 684 KLSM 687
            LS+
Sbjct: 700 ALSL 703


>gi|291515307|emb|CBK64517.1| SSU ribosomal protein S1P [Alistipes shahii WAL 8301]
          Length = 611

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +++I S     E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV   
Sbjct: 198 AELEAQKQVIMSKL---EKGQILEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVNHP 253

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
            ++V     + V +LDFD+ + +I L +K
Sbjct: 254 EEIVALDQKINVVILDFDEAKKRIALGLK 282



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L   DR +
Sbjct: 303 KGRVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|161621315|ref|YP_560017.2| 30S ribosomal protein S1 [Burkholderia xenovorans LB400]
          Length = 571

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S VV+ GD V V +L
Sbjct: 284 PSGTRLF-GKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVL 342

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D DR +I L MK    N
Sbjct: 343 EIDEDRRRISLGMKQCKPN 361



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++
Sbjct: 203 IVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEK 261

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 262 NRVSLGIK 269



 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS +E   +     K+GD V   +L  D ++ 
Sbjct: 377 QGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKKGDEVEAIVLGIDVEKE 436

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 437 RISLGIK 443


>gi|50083344|ref|YP_044854.1| ribonuclease PH [Acinetobacter sp. ADP1]
 gi|49529320|emb|CAG67032.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ADP1]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 14  MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 69

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  ++        T+ I  
Sbjct: 70  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+DA             P+   VA I++G+ +D     +L
Sbjct: 130 DVIQADGGTRTAAITGAAVALIDAMNVLLEKKKIKQDPLKGLVAAISVGIYQDE----VL 185

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 186 LDLCYEEDSNCQTDLNVVMTQAG 208


>gi|313682012|ref|YP_004059750.1| SSU ribosomal protein s1p [Sulfuricurvum kujiense DSM 16994]
 gi|313154872|gb|ADR33550.1| SSU ribosomal protein S1P [Sulfuricurvum kujiense DSM 16994]
          Length = 551

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E +K+ +G V K+  +G FV   G  DGLVH +++S +     S + KEGD V VK + +
Sbjct: 196 EEDKVIQGTVKKITSYGMFVD-VGGIDGLVHYNEISYKGPVNPSKLYKEGDVVNVKAIAY 254

Query: 678 D-DRGKIKLSMKVV 690
           D D+  + LS+K V
Sbjct: 255 DKDKRHLSLSIKAV 268



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + DFGAFV   G  +GL+H   LS ++  K  + +K GD + VK+   + + 
Sbjct: 372 VVSGTVTSLTDFGAFVK-VGGVEGLLHNQDLSWDKNVKCKETLKVGDEIEVKIAKINAED 430

Query: 681 GKIKLSMKVVDQN 693
            KI L+ K ++++
Sbjct: 431 EKISLNRKSLEES 443


>gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
          Length = 543

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I D   VN +  G+V  ++  GAFV      +G V +S++S +R+ +  +++K G+ V 
Sbjct: 351 NIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVK 410

Query: 672 VKLLDFDDRG-KIKLSMKVVDQN 693
           VK+L  D    KI LS++   +N
Sbjct: 411 VKILKIDKENRKITLSIRRTQEN 433


>gi|329847165|ref|ZP_08262193.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19]
 gi|328842228|gb|EGF91797.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19]
          Length = 562

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEEARAEQRTELVGQLAE-GEIRDGVVKNITDYGAFVDLGGI-DGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S +RV+  S V+  GD V V+++  + D  +I L MK
Sbjct: 226 DMSWKRVSHPSQVLNVGDAVRVQIIKINPDTQRISLGMK 264



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-----STERVAKTSDVVKEGDTVWVK 673
           +    +G+V    +FG FV F    DG+VH+S L       E +AK     K+GD V  K
Sbjct: 367 IGSTIEGEVKNATEFGLFVGFENDIDGMVHLSDLDWNVPGEEAIAK----YKKGDAVRSK 422

Query: 674 LLDFD-DRGKIKLSMK 688
           +LD D D+ +I L +K
Sbjct: 423 VLDVDVDKERISLGIK 438


>gi|302545248|ref|ZP_07297590.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
 gi|302462866|gb|EFL25959.1| 30S ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
          Length = 188

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            +   D   V +  +GQV K++ FGAFV   G  +GLV + +L++  VA   + V+ GD 
Sbjct: 107 FQEFADTVGVGRRLQGQVTKLVPFGAFVQVAGGVEGLVPLQELTSTPVATPQEAVEVGDE 166

Query: 670 VWVKLLDFD 678
           V V + D D
Sbjct: 167 VTVTVTDVD 175


>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
 gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
          Length = 268

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 13/161 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R ++AQ+       GSS    G T+ + VVT G  E  Q    +   QR
Sbjct: 13  LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVT-GPSEQGQQQRRVQTAQR 71

Query: 372 NDFMMHYNFLPCATGEVSRM--GAPSRR----EIGHGRLARRAIHPVLPQTAQFPY-TLR 424
           +   ++ N +      V R   G   +R    E+         +H  L     FP+ ++ 
Sbjct: 72  DVAAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHL-----FPHSSIT 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           I   +   DGS   A +  ++LAL+DAG+P++  +A    G
Sbjct: 127 ISLHVLSQDGSLLAALLNATTLALIDAGIPMTDYIAACTAG 167


>gi|239631671|ref|ZP_04674702.1| transcriptional accessory protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066283|ref|YP_003788306.1| transcriptional accessory protein [Lactobacillus casei str. Zhang]
 gi|239526136|gb|EEQ65137.1| transcriptional accessory protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438690|gb|ADK18456.1| Transcriptional accessory protein [Lactobacillus casei str. Zhang]
          Length = 725

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS+++ + V     VV  GD   VW++ +D   R 
Sbjct: 655 EGTVRNVVDFGAFVDIGVKHDGLVHISKMARKFVRDPKTVVAIGDIVEVWIESVDL-ARE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|260836913|ref|XP_002613450.1| hypothetical protein BRAFLDRAFT_123927 [Branchiostoma floridae]
 gi|229298835|gb|EEN69459.1| hypothetical protein BRAFLDRAFT_123927 [Branchiostoma floridae]
          Length = 804

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  + DFGAFV     +DGL+H S++  +R+ K    +  GD V VK+L+ D  RG+I
Sbjct: 737 GRVTNLTDFGAFVDIGVGKDGLIHKSKIRPDRL-KGKKCLGPGDKVEVKVLNVDPSRGRI 795

Query: 684 KLSM 687
            L +
Sbjct: 796 GLEL 799


>gi|187925061|ref|YP_001896703.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
 gi|226736896|sp|B2T6B5|RNPH_BURPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187716255|gb|ACD17479.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
          Length = 246

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR +  +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTNDTQRPSGRQANQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVAKLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|20093857|ref|NP_613704.1| translation initiation factor IF-2 subunit alpha [Methanopyrus
           kandleri AV19]
 gi|23821747|sp|Q8TY86|IF2A_METKA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|19886786|gb|AAM01634.1| Translation initiation factor eIF2-alpha [Methanopyrus kandleri
           AV19]
          Length = 267

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVK 665
           M R + D+PE  +I    V +V D GAFV    + G  DG +HIS++++  V    D VK
Sbjct: 1   MPRKLRDLPEEGEIVMATVERVEDHGAFVTLDEYPGV-DGYIHISEVASGWVKNIRDYVK 59

Query: 666 EGDTVWVKLLDFDDRGKI-KLSMKVVDQNTGK 696
           EG  V  K++  + + K   LS++ V  +  K
Sbjct: 60  EGQKVVAKVIRVNPKRKYANLSLRKVTDHQRK 91


>gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG']
          Length = 591

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 614 TDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +D+P    V     G V KVMDFG FV      +GLVH+S++  E   +   V + G ++
Sbjct: 467 SDIPSRFPVGSFLDGVVTKVMDFGFFVELAEGIEGLVHVSEVDLESGQRLDQVYQPGMSL 526

Query: 671 WVKLLDFDD-RGKIKLSMKVVDQNT 694
            V+++  D    KI LSMK V  ++
Sbjct: 527 PVRVIKLDPAERKIGLSMKAVSADS 551



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  +  G++  + DFGAFV      DGL+HIS +S T+ V   S+V K+G  V V +L  
Sbjct: 387 VGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVVLKI 446

Query: 678 D-DRGKIKLSMKVVDQN 693
           + +R ++ L  K V ++
Sbjct: 447 EKERQRLSLGFKQVSED 463



 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E  R+  + +T D  +  +I +G V  + D+GAF+   G  DGL+HI+ +S  RV    
Sbjct: 198 LEEWRDRRKKVTMDALKEGEILEGIVKNITDYGAFIDLGGI-DGLLHITDMSWGRVTNPQ 256

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + +  GD V V +L  D + G++ L +K
Sbjct: 257 EFMNVGDKVNVVVLKHDKETGRVSLGLK 284



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           T  PE  ++   +VV + D+GAF+      +GL+H++++S    V   S ++  GDT+ V
Sbjct: 296 TRYPEGTRV-NARVVSITDYGAFLEIEPGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEV 354

Query: 673 KLLDFDDRG-KIKLSMKVVDQN 693
           ++L  D++  KI L +K +  N
Sbjct: 355 QVLKIDEKNRKISLGLKQLGPN 376


>gi|328882703|emb|CCA55942.1| Ribonuclease PH [Streptomyces venezuelae ATCC 10712]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTGEYSMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  V  +++G+V    D 
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIV----DG 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           + L D+  +ED     D  V  T  G
Sbjct: 173 VPLLDLCYEEDVRADTDMNVVCTGDG 198


>gi|241764520|ref|ZP_04762540.1| ribosomal protein S1 [Acidovorax delafieldii 2AN]
 gi|241366056|gb|EER60660.1| ribosomal protein S1 [Acidovorax delafieldii 2AN]
          Length = 561

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 194 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G++  + D+GAFV      +GLVH+S++  T +    + +V  GD V V +L
Sbjct: 275 PQGTRLF-GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPAKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|212703705|ref|ZP_03311833.1| hypothetical protein DESPIG_01752 [Desulfovibrio piger ATCC 29098]
 gi|212672857|gb|EEB33340.1| hypothetical protein DESPIG_01752 [Desulfovibrio piger ATCC 29098]
          Length = 574

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  ++D+GAFV      +GLVHIS++S T ++   S +V  GD V V +L  D ++ +
Sbjct: 300 GKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKR 359

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 360 ISLGMKQVRPN 370



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + DFG FV      +GLVH+S+LS++++   +++ KEG  +  K++    +  +
Sbjct: 473 KGVVTNITDFGLFVEVEEGIEGLVHVSELSSKKIKSPAELYKEGQEIQAKVIHVSAEERR 532

Query: 683 IKLSMKVV--DQNTGKP 697
           + LS+K +  D++  KP
Sbjct: 533 LGLSIKQIKDDEDRRKP 549



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I +G +  + +FG F+      DGL+H+S +S T++V   +++ K GDTV  K+L  D  
Sbjct: 384 ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNEIYKVGDTVQAKVLTVDQE 443

Query: 681 G-KIKLSMK-VVDQNTG 695
             K  L +K +VD   G
Sbjct: 444 NEKFTLGIKQLVDDPWG 460


>gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
 gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
          Length = 237

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R    +G    R +   RL  RA+   + ++A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 DVLQADGGTRCASITGGWIALRLAVNKLMKAGDVVSDPLVDPVAAVSCGI 166


>gi|304415504|ref|ZP_07396141.1| 30S ribosomal subunit protein S1 [Candidatus Regiella insecticola
           LSR1]
 gi|304282643|gb|EFL91169.1| 30S ribosomal subunit protein S1 [Candidatus Regiella insecticola
           LSR1]
          Length = 551

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ ++ +R+   ++ V  GD + V++L +D +R
Sbjct: 194 IIKGVVKNLTDYGAFVDLGGV-DGLLHITDMAWKRIKHPNECVCVGDEINVRVLKYDAER 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 TRVSLGLK 260



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+ KG+V  + D+G FV      +GLVH+S++  T +    + VV  GD V V +L
Sbjct: 275 PESSKL-KGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPAKVVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMK 688
           D D DR +I L +K
Sbjct: 334 DIDGDRRRISLGLK 347


>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040307|gb|ACT57103.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+ GR    +R+IS    + +   GS L   GDT  +   TL    +E+    +  T+ 
Sbjct: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   +  A S R+ G      R+  RA+  V+  +A     + I  
Sbjct: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A + G+ +AL D 
Sbjct: 117 DVIQADGGTRTAAITGAWVALHDC 140


>gi|56552694|ref|YP_163533.1| 30S ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762615|ref|ZP_04760688.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753664|ref|YP_003226557.1| 30S ribosomal protein S1 [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56544268|gb|AAV90422.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241372810|gb|EER62514.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258553027|gb|ACV75973.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 568

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 594 KIASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            I  S  A +E  R   RS  I  + E  ++  G V  + D+GAFV   G  DGL+H++ 
Sbjct: 172 NIVVSRRAVLEETRAEQRSGLIQSLAE-GQVITGVVKNITDYGAFVDLGGI-DGLLHVTD 229

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LS  RV   S+++  GD+V V+++  + D  +I L MK
Sbjct: 230 LSYRRVGHPSEMIAIGDSVTVQIIRINRDTQRISLGMK 267



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V   + G+V  + ++GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 283 VGAKFMGRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVVILEV 342

Query: 678 D-DRGKIKLSMKVVDQN 693
           D ++ +I L +K    N
Sbjct: 343 DAEKRRISLGLKQAQPN 359


>gi|152976902|ref|YP_001376419.1| ribonuclease PH [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043753|sp|A7GTG6|RNPH_BACCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152025654|gb|ABS23424.1| ribonuclease PH [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R +      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREVRELRHVHIHTNYLKHPEGSVLIEVGDTKVICSATV----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G++++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVTKIPVKDYLAATSVGILEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED    +D  V  T  G
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKG 196


>gi|329964008|ref|ZP_08301262.1| Tex-like protein [Bacteroides fluxus YIT 12057]
 gi|328526431|gb|EGF53445.1| Tex-like protein [Bacteroides fluxus YIT 12057]
          Length = 711

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E  ++  G V  + +FGAFV      +GL+H+SQL+   ++  ++VV     
Sbjct: 628 VRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLIHLSQLADRFISDPNEVVSIHQQ 686

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           + VK+L  D +R +I+L++K V Q+
Sbjct: 687 LRVKVLSIDIERKRIQLTLKGVAQD 711


>gi|172036568|ref|YP_001803069.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
 gi|171698022|gb|ACB51003.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
          Length = 302

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S    I AAR       D  E  ++  G+V ++  +G FV F G   GL+HI+Q
Sbjct: 177 TNKLVLSQRKAIAAAR------MDKLEAGQLVTGKVSRIQPYGVFVDFEGV-SGLLHITQ 229

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           +S  RV   + + K    + V +L  D+ + +I LS K+++   G+ I
Sbjct: 230 VSGSRVDDLNHLFKYNQDIKVMILSIDEYKNRIALSTKILENYPGEMI 277


>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
 gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
          Length = 257

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 76  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 135

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++  GD   +L
Sbjct: 136 DVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGIL-GGD---VL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 192 CDLEYVEDSAADTDMNVVMTEEG 214


>gi|281423107|ref|ZP_06254020.1| protein YhgF [Prevotella oris F0302]
 gi|281402443|gb|EFB33274.1| protein YhgF [Prevotella oris F0302]
          Length = 707

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQ++ + +   ++VVK    V V++++ D  R +I
Sbjct: 639 GIVTNITNFGAFVDIGVHQDGLVHISQMADKFIKDPNEVVKLHQHVRVRVIEVDLRRKRI 698

Query: 684 KLSMK 688
            LSM+
Sbjct: 699 ALSMR 703


>gi|220905593|ref|YP_002480905.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869892|gb|ACL50227.1| ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 570

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  ++D+GAFV      +GLVHIS++S T ++   S +V  GD V V +L  D ++ +
Sbjct: 293 GKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKR 352

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 353 ISLGMKQVRPN 363



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + DFG FV      +GLVH+S+LS+++V   +++ KEG  +  K++    +  +
Sbjct: 466 KGIVTNITDFGLFVEVEEGIEGLVHVSELSSKKVKTPAEIYKEGQEIQAKVIHVSAEERR 525

Query: 683 IKLSMKVVDQ 692
           + LS+K + +
Sbjct: 526 LGLSIKQIQE 535



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I +G +  + +FG F+      DGL+H+S +S T++V   +++ K GDTV  K+L  D  
Sbjct: 377 ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNEMYKVGDTVQAKVLTVDQE 436

Query: 681 G-KIKLSMK-VVDQNTG 695
             K  L +K +VD   G
Sbjct: 437 NEKFTLGVKQLVDDPWG 453


>gi|313672062|ref|YP_004050173.1| RNA binding s1 domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312938818|gb|ADR18010.1| RNA binding S1 domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 572

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I KG++  + +FG FV F G  DGLV  + +S TE V+  ++  K GD V  K+L  D +
Sbjct: 378 IVKGKIKGITEFGLFVDFGGVVDGLVRKTDISWTEEVSDLNERFKVGDEVEAKILTIDPE 437

Query: 680 RGKIKLSMKVVDQNTGKPI 698
           + +I L +K +++N  K I
Sbjct: 438 KERIALGIKQLEKNPWKEI 456



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           IEA  E  ++  +  +   + KG V  + +FGAF++  G  DG +    ++  RV K   
Sbjct: 190 IEAQEEEKKNFFNSIKEGDVLKGTVKSIKEFGAFINL-GPVDGFLARENIAWGRVTKVEK 248

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  D V VK++  D +  KI LS+K + +N
Sbjct: 249 YLEVDDKVDVKIIKIDRENSKIDLSIKDLKEN 280


>gi|291166728|gb|EFE28774.1| ribonuclease PH/Ham1 protein [Filifactor alocis ATCC 35896]
          Length = 471

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 19/166 (11%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           + S  +RDI+ + G+ +   GS L   GDT+ I   ++    +E+    L GT +     
Sbjct: 2   KSSIQLRDINIETGINKYAEGSVLVSFGDTRVICTASV----EEKVPAFLKGTGKGWVSA 57

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY----TLRIVSEITES 432
            Y  LP +T +  +  +   +  G G+  +R I   L     F      T+ I  ++ ++
Sbjct: 58  EYAMLPRSTEQRKKRDSSRGKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQA 117

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLV 467
           DG +  A++ GS +A+           M    PIS  ++ +++G+V
Sbjct: 118 DGGTRTASISGSFVAMAIACKQLYDKKMIEEFPISHYISAVSVGIV 163


>gi|269836459|ref|YP_003318687.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
 gi|269785722|gb|ACZ37865.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
          Length = 246

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 29/211 (13%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           V +  + R  GR ++ +R ++ Q G      GS+L   G+T  +   T+    +E+    
Sbjct: 2   VAIFNRKRPGGRANDELRPVTIQPGFAPYAEGSALITMGNTHVLCTATI----EERVPPF 57

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQF 419
           L G  +      Y  LP      S    P  R +  G      RL  R++  V       
Sbjct: 58  LVGKGQGWVTAEYGMLP----RSSPQRIPRERSLTGGRTQEIQRLIGRSLRAVTKLDLLG 113

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVK 468
             T+ I  ++  +DG +  A + G  +AL  A            VP++  VA +++G+V 
Sbjct: 114 ERTILIDCDVLRADGGTRTAAITGGYVALRLALERLVRTGQLKAVPLTGYVAAVSVGVVW 173

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D     +  D+  +ED    +D  V  TD G
Sbjct: 174 DE----VRLDLEYEEDSQAEVDCNVVMTDRG 200


>gi|221068235|ref|ZP_03544340.1| ribosomal protein S1 [Comamonas testosteroni KF-1]
 gi|264677562|ref|YP_003277468.1| ribosomal protein S1 [Comamonas testosteroni CNB-2]
 gi|299532470|ref|ZP_07045861.1| 30S ribosomal protein S1 [Comamonas testosteroni S44]
 gi|220713258|gb|EED68626.1| ribosomal protein S1 [Comamonas testosteroni KF-1]
 gi|262208074|gb|ACY32172.1| ribosomal protein S1 [Comamonas testosteroni CNB-2]
 gi|298719555|gb|EFI60521.1| 30S ribosomal protein S1 [Comamonas testosteroni S44]
          Length = 560

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 194 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    + +V  GD V V +L
Sbjct: 275 PSATRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPTKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D +R 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEAGEAAVRNYKKGQEVEAIVLAVDVERE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 428 RISLGIKQLDSD 439


>gi|72119576|gb|AAZ61839.1| RNAse PH [Ralstonia eutropha JMP134]
          Length = 258

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++  +          G+  
Sbjct: 20  MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHK----KGSGE 75

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   A   ++ G      RL  RA+  V    A   YTL +  
Sbjct: 76  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDC 135

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + L
Sbjct: 136 DVLQADGGTRTAAITGAFVAAHDAISTMLRDGLIAASPIRDFVAAVSVGMV----DGVPL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 192 LDLDYAEDSNCDTDMNVVMTGSG 214


>gi|237728940|ref|ZP_04559421.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|283787723|ref|YP_003367588.1| ribonuclease PH [Citrobacter rodentium ICC168]
 gi|226909562|gb|EEH95480.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|282951177|emb|CBG90870.1| ribonuclease PH [Citrobacter rodentium ICC168]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVASGKLKTNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152]
 gi|61215825|sp|Q5Z0V1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152]
          Length = 257

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R++    G      GS L   G T+ +   ++         DS  G    
Sbjct: 4   RADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGW--- 60

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    G  S  G    R     RL  R++   +   A    T+ I  +
Sbjct: 61  -LTAEYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              PIS  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVTWLGAAGALADPQPISCAIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDTG 198


>gi|313622601|gb|EFR92991.1| general stress protein 13 [Listeria innocua FSL J1-023]
          Length = 117

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|86608329|ref|YP_477091.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556871|gb|ABD01828.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 304

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ +G+V  +  FG FV       GL+HI Q+S   VA   D+ K G  +   ++D D+ 
Sbjct: 198 QVVEGKVSGLKPFGVFVDLEEGVTGLLHIKQVSQSFVASLPDLFKPGQRIKAVVIDVDEA 257

Query: 680 RGKIKLSMKVVDQNTGK 696
           +G++ LS++V++++ G+
Sbjct: 258 KGRMALSLRVLEKHPGE 274


>gi|310815216|ref|YP_003963180.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare Y25]
 gi|308753951|gb|ADO41880.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare Y25]
          Length = 561

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 7/81 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVK 673
           PE   + +G+V  + +FG F+   G  DG+VH+S L+ E   +  DV+   ++GD V  K
Sbjct: 367 PEGTNV-EGEVKNITEFGLFIGLSGDIDGMVHLSDLTWE--GRGEDVIGDYRKGDVVKAK 423

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L+ D ++ +I LS+K +D++
Sbjct: 424 VLEVDVEKERISLSIKAMDED 444



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLTE-GQVVDGVVKNITEYGAFVDLGGV-DGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G+T+ V+++  + +  +I L MK
Sbjct: 227 DMAWRRVNHPSEILSIGETIKVQVIKINKETHRISLGMK 265



 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ G+V  + ++GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 284 VHTGRVTNITEYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSS 343

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 344 KRRVSLGLKQTQRN 357


>gi|312112520|ref|YP_003990836.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
 gi|311217621|gb|ADP76225.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
          Length = 728

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D   V +   VWV  +D  D+G
Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVDNVDV-DKG 710

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 711 RISLSM 716


>gi|124515665|gb|EAY57174.1| ribosomal protein S1 [Leptospirillum rubarum]
          Length = 475

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 614 TDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +D+P    V     G V KVMDFG FV      +GLVH+S++  E   +   V + G ++
Sbjct: 351 SDIPSRFPVGSFLDGVVTKVMDFGFFVELAEGIEGLVHVSEVDLESGQRLDQVYQPGMSL 410

Query: 671 WVKLLDFDD-RGKIKLSMKVVDQNT 694
            V+++  D    KI LSMK V  ++
Sbjct: 411 PVRVIKLDPAERKIGLSMKAVSADS 435



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E  R+  + +T D  +  +I +G V  + D+GAF+   G  DGL+HI+ +S  RV    
Sbjct: 82  LEEWRDRRKKVTMDALKEGEILEGIVKNITDYGAFIDLGGI-DGLLHITDMSWGRVTNPQ 140

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + +  GD V V +L  D + G++ L +K
Sbjct: 141 EFMNVGDKVNVVVLKHDKETGRVSLGLK 168



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  +  G++  + DFGAFV      DGL+HIS +S T+ V   S+V K+G  V V +L  
Sbjct: 271 VGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVVLKI 330

Query: 678 D-DRGKIKLSMKVVDQN 693
           + +R ++ L  K V ++
Sbjct: 331 EKERQRLSLGFKQVSED 347



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           T  PE  ++   +VV + D+GAF+      +GL+H++++S    V   S ++  GDT+ V
Sbjct: 180 TRYPEGTRV-NARVVSITDYGAFLEIEPGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEV 238

Query: 673 KLLDFDDRG-KIKLSMKVVDQN 693
           ++L  D++  KI L +K +  N
Sbjct: 239 QVLKIDEKNRKISLGLKQLGPN 260


>gi|121610066|ref|YP_997873.1| 30S ribosomal protein S1 [Verminephrobacter eiseniae EF01-2]
 gi|121554706|gb|ABM58855.1| SSU ribosomal protein S1P [Verminephrobacter eiseniae EF01-2]
          Length = 562

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 194 IVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQDITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + +V  GD   V +L
Sbjct: 275 PQGTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPAKLVTLGDEAEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 368 KGPVKSITDFGVFVGLAAGIDGLVHLSDLSWSEPGEAAVRNYKKGQEVQAIVLAVDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|315924264|ref|ZP_07920488.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622425|gb|EFV02382.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 247

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 22/207 (10%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M ++  R DGR     R         +  HGS L   GDT+ I         +E     +
Sbjct: 4   MTEQFKRQDGRFYNEGRPTQVMRHFTKHAHGSVLMAVGDTKVICTAMC----EETVPGFM 59

Query: 367 SGTQRNDFMMHYNFLPCAT---GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            G  R      Y+ LP AT       R G    R +   RL  R++  V+        T+
Sbjct: 60  RGEGRGWVTAEYSMLPSATETRKRRDRNGKTDGRSVEIQRLIGRSLRAVMDMETLGERTI 119

Query: 424 RIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDD 472
           RI  ++ ++DG +    + G+ +A       L+D+G+    PI   VA  ++G+ +    
Sbjct: 120 RIDCDVIQADGGTRTTAITGAFIALWDCVASLLDSGMIEKNPIRGFVAATSVGVWQG--- 176

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
              + D+   ED    +D  +  TD G
Sbjct: 177 -TPILDLCYLEDSHAEVDMNLVMTDDG 202


>gi|262370973|ref|ZP_06064296.1| ribonuclease PH [Acinetobacter johnsonii SH046]
 gi|262314049|gb|EEY95093.1| ribonuclease PH [Acinetobacter johnsonii SH046]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD++      +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRTLDQLRDVTITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+DA             P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALIDAMNTLLEKKKIKQDPLKGLVAAISVGIFQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
 gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
          Length = 249

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +     
Sbjct: 7   LLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKG---- 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYT- 422
              T+ ND +++  +         R   P   R+        ++A+   + ++  +P + 
Sbjct: 62  -KKTEGNDLVINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAI-KSELYPRSQ 119

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  E+ ++DG++   ++  ++LAL+DAG+ +++ V      L    +  I L+DIS  
Sbjct: 120 IDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASL---SNANIPLTDISHI 176

Query: 483 EDHLGHMDFKVAG--TDSGITAMQM 505
           E+  G     +A   T   I  M+M
Sbjct: 177 EEVSGGPKLTIAALPTAEKIAFMEM 201


>gi|119492683|ref|ZP_01623862.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
 gi|119453021|gb|EAW34192.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D DRG+I LS K ++   G
Sbjct: 254 DADRGRISLSTKQLEPEPG 272


>gi|114762203|ref|ZP_01441671.1| ribonuclease PH [Pelagibaca bermudensis HTCC2601]
 gi|114545227|gb|EAU48230.1| ribonuclease PH [Roseovarius sp. HTCC2601]
          Length = 237

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G+ +   GS L   GDT  I   +L    + +    + G+  
Sbjct: 1   MRPSGRDLSEMRPVSIETGVTKHAEGSCLIKMGDTHVICTASL----EPRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R  A + ++ G      RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A + G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 DVIQADGGTRCAAITGGWVALRLAVNKLMKAGDVITDPLISPVAAVSCGI 166


>gi|303326029|ref|ZP_07356472.1| ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
 gi|302863945|gb|EFL86876.1| ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
          Length = 569

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  ++D+GAFV      +GLVHIS++S T ++   S +V  GD V V +L  D ++ +
Sbjct: 292 GKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKR 351

Query: 683 IKLSMKVVDQN 693
           I L MK V  N
Sbjct: 352 ISLGMKQVRPN 362



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + D   V    KG V  + DFG FV      +GLVH+S+LS ++V   +++ KEG  +  
Sbjct: 454 VPDTYPVGCTIKGVVTNITDFGLFVEVEEGIEGLVHVSELSGKKVKTPAEIYKEGQEIQA 513

Query: 673 KLL 675
           K++
Sbjct: 514 KVI 516



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G +  + +FG F+      DGL+H+S +S T++V   +++ K GDTV  K+L  D  
Sbjct: 376 VLEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELYKVGDTVQAKVLTVDQE 435

Query: 681 G-KIKLSMK-VVDQNTG 695
             K  L +K +VD   G
Sbjct: 436 NEKFTLGVKQLVDDPWG 452


>gi|239948027|ref|ZP_04699780.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922303|gb|EER22327.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 568

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S++
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEM 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++    V V ++ FD++ K I L +K +D N  + I
Sbjct: 248 LEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAI 283


>gi|157693559|ref|YP_001488021.1| general stress protein 13 [Bacillus pumilus SAFR-032]
 gi|157682317|gb|ABV63461.1| possible RNA-binding protein [Bacillus pumilus SAFR-032]
          Length = 130

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQVKVLSV 65

Query: 678 DDR-GKIKLSMKVV 690
           D+  GKI LS++  
Sbjct: 66  DENAGKISLSIRAT 79


>gi|149184781|ref|ZP_01863099.1| 30S ribosomal protein S1 [Erythrobacter sp. SD-21]
 gi|148832101|gb|EDL50534.1| 30S ribosomal protein S1 [Erythrobacter sp. SD-21]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 51/81 (62%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ +GQV+      + D+GAFV   G  DGL+H++ +S +RV   S++++ G TV V+
Sbjct: 181 IDKLAEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDMSYKRVNHPSEMIEIGQTVTVQ 239

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           ++  + D  +I L MK ++ +
Sbjct: 240 IIRINEDTQRISLGMKQLESD 260


>gi|116873734|ref|YP_850515.1| general stress protein 13 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742612|emb|CAK21736.1| S1 RNA binding domain protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 117

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|329925260|ref|ZP_08280203.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
 gi|328940093|gb|EGG36426.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
          Length = 252

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR S+ +R ++    + +   GS     GDT+ ++  T+    DE+    L G  +
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATV----DEKVPPFLKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E +R G  S R +   RL  RA+  V+   A    T+ + 
Sbjct: 57  GWVTAEYSMLPRATQSRNQREANR-GKLSGRTMEIQRLIGRALRSVVNLHALGERTITLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +   ++ G+ +AL             A  PI+  +A I++G+   G   ++
Sbjct: 116 CDVIQADGGTRTTSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIA--GGQALL 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D++ +ED    +D  +  T SG
Sbjct: 174 --DLNYEEDSKAKVDMNLVMTGSG 195


>gi|313617454|gb|EFR89830.1| general stress protein 13 [Listeria innocua FSL S4-378]
          Length = 117

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|126654692|ref|ZP_01726226.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
 gi|126623427|gb|EAZ94131.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
          Length = 304

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S    I AAR       D  E  ++  G+V ++  +G FV F G   GL+HI+Q
Sbjct: 177 TNKLVLSQRKAIAAAR------MDKLEAGQLVSGKVSRIQPYGVFVDFEGV-SGLLHITQ 229

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           +S  RV   + + K    + V +L  D+ + +I LS K+++   G+
Sbjct: 230 VSGSRVDDLNHIFKYNQDIKVMILSIDEYKNRIALSTKILENYPGE 275


>gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649]
 gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649]
          Length = 254

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 25/210 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M  ++ R DGR  E +R+I      L    GS L   G T+ +   +      E     L
Sbjct: 1   MTSQQTRHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASF----TEGVPRWL 56

Query: 367 SGTQRNDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y  LP +T       SR G    R     RL  RA+  V+   A    T
Sbjct: 57  KGKGTGWVTSEYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKD 469
           + +  ++ ++DG +  A++ G+ +AL+DA               P+   +A +++G+V  
Sbjct: 117 IVVDCDVLQADGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGG 176

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
               + + D+   ED     D  V  T SG
Sbjct: 177 ----LPVLDLDYPEDSTADTDMNVVMTGSG 202


>gi|328951609|ref|YP_004368944.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328451933|gb|AEB12834.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 551

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           ++++  EV +  +G+VV +  FGAF+      +GL+H+S++S T+R    S+V+KEG+ V
Sbjct: 300 TVSERYEVGQRVRGKVVGLTPFGAFLEVEPGLEGLIHVSEMSWTKRPKHPSEVLKEGEEV 359

Query: 671 WVKLLDFDDRGKIKLSM 687
              +L  D   + +LS+
Sbjct: 360 EAVVLRIDPEAR-RLSL 375



 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + KG++  V +FG FV      +GLVHIS+L   R+   ++  K+G+ + V +L  D   
Sbjct: 397 VIKGKITGVTEFGVFVELEPGIEGLVHISELDYARIENPAEQFKKGEELEVVILQIDPVE 456

Query: 681 GKIKLSMK 688
            +I LS K
Sbjct: 457 QRISLSRK 464


>gi|295402568|ref|ZP_06812517.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975416|gb|EFG51045.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 728

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D   V +   VWV  +D  D+G
Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVDNVDV-DKG 710

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 711 RISLSM 716


>gi|241202761|ref|YP_002973857.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856651|gb|ACS54318.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +    +   GS L   GDT  +   +L    +E+    L  T +
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G  +AL D 
Sbjct: 117 DVIQADGGTRTASITGGWIALYDC 140


>gi|87160497|ref|YP_493558.1| hypothetical protein SAUSA300_0858 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194649|ref|YP_499445.1| hypothetical protein SAOUHSC_00892 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253731562|ref|ZP_04865727.1| RNA binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|87126471|gb|ABD20985.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202207|gb|ABD30017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|253724805|gb|EES93534.1| RNA binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320141228|gb|EFW33075.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143000|gb|EFW34791.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 114

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+ L
Sbjct: 2   RVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNL 61

Query: 686 SMK 688
           S+K
Sbjct: 62  SLK 64


>gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
 gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
          Length = 273

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 36  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 91

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 92  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 151

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 152 DVIQADGGTRTASITGACVALADALNKLVASGKLKTNPMKGMVAAVSVGIV-NGE---AL 207

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 208 CDLEYVEDSAAETDMNVVMTEDG 230


>gi|251772978|gb|EES53535.1| ribosomal protein S1 [Leptospirillum ferrodiazotrophum]
          Length = 505

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 614 TDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           TD+PE   V +  KG+V KVMDFG FV      +GLVH+S++      +   +   G  +
Sbjct: 421 TDIPERFQVGQSMKGKVTKVMDFGFFVEIAEGVEGLVHVSEVDLPNGERLDQLFPVGTEL 480

Query: 671 WVKLLDFDD-RGKIKLSMKVVDQNT 694
            V+++  D    KI LS+K  D+  
Sbjct: 481 QVRIVKVDKGERKIGLSVKGADEGA 505



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+   +VV + D+GAF+      +GL+HI+++S    V   S ++  GDTV  K+L
Sbjct: 253 PEGSKV-PAKVVSITDYGAFLEIEPGVEGLMHITEMSWNHEVKHPSKIMAVGDTVEAKVL 311

Query: 676 DFDDRG-KIKLSMKVVDQN 693
             D++  KI L +K +  N
Sbjct: 312 KIDEKNRKISLGLKQLGPN 330



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ +G V  + D+GAF+   G  DGL+HI+ +S  RV+   +++  GD + V +L  D 
Sbjct: 170 GEVLEGIVKNITDYGAFIDLGGV-DGLLHITDMSWGRVSSPQNLMAVGDKINVMVLKHDK 228

Query: 679 DRGKIKLSMK 688
           + G++ L +K
Sbjct: 229 ETGRVSLGLK 238



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           + D   +  I  G+V  + DFG FV      DGL+HIS LS T  V   S++ K+G  V 
Sbjct: 335 VEDRYPIGTIVSGKVKSLTDFGVFVGLDEGIDGLIHISDLSWTRHVRHPSEMFKKGQKVE 394

Query: 672 VKLLDFD-DRGKIKLSMK 688
             +L  + +R ++ L  K
Sbjct: 395 AIVLKIEKERQRLSLGYK 412


>gi|326336535|ref|ZP_08202705.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691408|gb|EGD33377.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 585

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  R I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 191 VVVSHKALIEADIEEQKREIIGQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLIHITDLS 249

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   ++V++    + V +LDFDD + +I+L +K
Sbjct: 250 WSRINHPTEVLELDQKINVVILDFDDNKSRIQLGLK 285



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S +  +    D V  GD V   +L  D D  
Sbjct: 306 KGKVVVIADYGAFVEVADGVEGLIHVSEMSWSTHLRSAQDFVNIGDEVEAVILTLDRDER 365

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 366 KMSLGIK 372


>gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
 gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
          Length = 251

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R IS   G      GS L   G T+ +   ++    ++       G+  
Sbjct: 3   TRADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASV----NDGVPPWRRGSGL 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E S   +   R  G      RL  R++   +   A    T+ +  
Sbjct: 59  GWLTAEYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTAAITGAYVALADAVTWLRAAGKLSDPQPLSCAIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDSRAEVDMNVVATDAG 198


>gi|84501187|ref|ZP_00999392.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
 gi|84390478|gb|EAQ02966.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
          Length = 237

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 31/176 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G+ +   GS L   GDT  I   T+    +++    + G+  
Sbjct: 1   MRPSGRDLSEMRAVSIETGVTKHAEGSCLIKVGDTHVICTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPY 421
                 Y  LP +T   SRM    RRE   G          RL  R++   + + A    
Sbjct: 57  GWVTAEYGMLPRST--TSRM----RREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGER 110

Query: 422 TLRIVSEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
            + I  ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 111 QISIDCDVIQADGGTRCASITGGWVALRLAVNKLMKAGDVVTDPLVDPVAAVSCGI 166


>gi|299140633|ref|ZP_07033771.1| S1 RNA binding domain protein [Prevotella oris C735]
 gi|298577599|gb|EFI49467.1| S1 RNA binding domain protein [Prevotella oris C735]
          Length = 707

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQ++ + +   ++VVK    V V++++ D  R +I
Sbjct: 639 GIVTNITNFGAFVDIGVHQDGLVHISQMADKFIKDPNEVVKLHQHVRVRVIEVDLRRKRI 698

Query: 684 KLSMK 688
            LSM+
Sbjct: 699 ALSMR 703


>gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP +T   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYSMLPRSTN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  VA I++G+V    D 
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIV----DG 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             L D+  +ED     D  V  T  G
Sbjct: 173 TPLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|213962551|ref|ZP_03390813.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno]
 gi|213954877|gb|EEB66197.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno]
          Length = 584

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 191 VVVSHKALIEADIEEQKKEIISQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLIHITDLS 249

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   S+VV     + V +LDFDD + +I+L +K
Sbjct: 250 WARINHPSEVVSVDQKLNVVILDFDDNKSRIQLGLK 285



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 66/249 (26%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS------------ 540
           + G    IT+  + + +GG+   I +  L  A+      +N  S+V+S            
Sbjct: 220 LEGVVKNITSYGVFVDLGGVDGLIHITDLSWAR------INHPSEVVSVDQKLNVVILDF 273

Query: 541 ---ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG---IVEQTGAKVNIDD--DGT 592
              +SR+QLG      ++   P D + + + +G KV +G   ++   GA V I D  +G 
Sbjct: 274 DDNKSRIQLG----LKQLSKHPWDALADDLKVGDKV-KGKVVVIADYGAFVEIADGVEGL 328

Query: 593 VKIASSSLA--------------EIEAA--------REM---IRSITDVPEVNKIYK--- 624
           + ++  S +              E+EA         R+M   I+ +T  P +N   K   
Sbjct: 329 IHVSEMSWSTHLRSAQDFVKLGDEVEAVILTLDRNERKMSLGIKQLTPDPWINITEKYPV 388

Query: 625 -----GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
                G V    +FG FV      DGL+HI+ LS T+++   S+ V  GD + V +L+ D
Sbjct: 389 GSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNSGDKIEVVVLELD 448

Query: 679 DRGKIKLSM 687
             G  KLS+
Sbjct: 449 AEGH-KLSL 456



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V   +L   DR +
Sbjct: 306 KGKVVVIADYGAFVEIADGVEGLIHVSEMSWSTHLRSAQDFVKLGDEVEAVILTL-DRNE 364

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 365 RKMSLGI 371


>gi|146422384|ref|XP_001487131.1| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLSTE--RVAKTSDVVKEGDTVWV 672
           EV +I  G V  ++ +GAF+     +    GL H+SQL+    ++   S VVK    V+V
Sbjct: 161 EVGEIVTGAVSNIVPYGAFIRLQSGKKSVVGLCHVSQLTFTGTKILSPSQVVKVDQQVFV 220

Query: 673 KLLDFDDRGK---IKLSMKVVDQNTG 695
           K+   + +G+     LSM+ +DQ+TG
Sbjct: 221 KITKIETQGRRERFSLSMRGIDQDTG 246


>gi|163757816|ref|ZP_02164905.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
 gi|162285318|gb|EDQ35600.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S + G+ +   GS L   GDT  +   +L    +E+    L    +
Sbjct: 1   MRPSGRKTDQMRAVSFERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRNGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG+  R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGDRMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A + G+ +AL D 
Sbjct: 117 DVIQADGGTRTAAITGAWIALHDC 140


>gi|7106892|gb|AAF36171.1|AF151085_1 HSPC251 [Homo sapiens]
          Length = 212

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           I  +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 17  IELMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 67


>gi|268593302|ref|ZP_06127523.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
 gi|291310999|gb|EFE51452.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
          Length = 237

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R I+      +   GS L   GDT+ +   T+    +E     L G  +     
Sbjct: 6   RQADQMRPITITRNYTKHAEGSVLIEFGDTKVLCNATV----EEGVPRFLKGQGQGWVTA 61

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP AT   ++  A   ++ G      RL  R++   +       YT+ +  ++ ++
Sbjct: 62  EYGMLPRATNSRNQREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQA 121

Query: 433 DGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A + G+ +AL+D           A  P+   VA +++G+V        L D+  
Sbjct: 122 DGGTRTAAISGACVALVDALNNMVEQGKIAKSPLKSMVAAVSVGIVNQE----ALCDLEY 177

Query: 482 DEDHLGHMDFKVAGTDSG 499
            ED     D  V   D G
Sbjct: 178 VEDSAAETDMNVVMMDDG 195


>gi|190890032|ref|YP_001976574.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
 gi|218516544|ref|ZP_03513384.1| ribonuclease PH [Rhizobium etli 8C-3]
 gi|226736928|sp|B3PZA2|RNPH_RHIE6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190695311|gb|ACE89396.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +++    L  T +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EDKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G  +AL D 
Sbjct: 117 DVIQADGGTRTASITGGWIALYDC 140


>gi|315221995|ref|ZP_07863906.1| putative general stress protein 13 [Streptococcus anginosus F0211]
 gi|315188961|gb|EFU22665.1| putative general stress protein 13 [Streptococcus anginosus F0211]
          Length = 123

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++ T  +    +++   D V V+++D+D+  GK
Sbjct: 8   KGRITGIQPYGAFVELETGAMGLIHISEIRTGYIENIHEILHVDDQVLVQVMDYDEFSGK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  ASLSMRTLEE 77


>gi|237738612|ref|ZP_04569093.1| LytB protein [Fusobacterium sp. 2_1_31]
 gi|229424095|gb|EEO39142.1| LytB protein [Fusobacterium sp. 2_1_31]
          Length = 827

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V VK+ D   +DR 
Sbjct: 567 GVVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVKITDLHPEDR- 625

Query: 682 KIKLSMK 688
           K+KL +K
Sbjct: 626 KLKLGIK 632



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKL 685
           V +V++FG  V    A  G +HIS++S +R+ K +D  K GD +   ++  D+  K +KL
Sbjct: 484 VTEVLEFGLAVD-INALKGFIHISEVSWKRLDKLADAYKVGDKIKAVVVSLDEAKKNVKL 542

Query: 686 SMK 688
           S+K
Sbjct: 543 SIK 545



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V DFG FV      DG +     S E +    D   EGD V  ++++ + D  KIKLS+K
Sbjct: 743 VADFGLFVELTKGIDGFIPTQYASKEFIKNIRDKFNEGDVVKARVVEVNKDTQKIKLSIK 802


>gi|161611257|ref|YP_296683.2| ribonuclease PH [Ralstonia eutropha JMP134]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++  +          G+  
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   A   ++ G      RL  RA+  V    A   YTL +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + L
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAISTMLRDGLIAASPIRDFVAAVSVGMV----DGVPL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 173 LDLDYAEDSNCDTDMNVVMTGSG 195


>gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1]
 gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V DG+    L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNNLVAAGKLKTNPMKGMVAAVSVGIV-DGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
 gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
          Length = 251

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 14  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 69

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 70  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 130 DVLQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIV-NGE---AI 185

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 186 CDLEYIEDSAAETDMNVVMTEDG 208


>gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1]
 gi|166228297|sp|A1TD14|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1]
          Length = 260

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G      GS L   G T+ +   ++     E       G+ + 
Sbjct: 4   REDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASV----TEGVPRWRKGSGQG 59

Query: 373 DFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y  LP AT E S       R+G  + +EI   RL  R++   +   A    T+ I
Sbjct: 60  WLTAEYAMLPAATHERSGRESVKGRVGGRT-QEI--SRLVGRSLRACIDLAALGENTIAI 116

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDF 473
             ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D 
Sbjct: 117 DCDVLQADGGTRTAAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAVSVGVV----DG 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            I  D+   ED    +D  V  TD+G
Sbjct: 173 RIRVDLPYTEDSRAEVDMNVVATDTG 198


>gi|326490501|dbj|BAJ84914.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 369

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGDTV V
Sbjct: 171 KIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKV 230

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +++ D ++ +I LS++ ++++
Sbjct: 231 IVVNVDAEKSRIGLSIRQLEED 252


>gi|91201436|emb|CAJ74496.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 718

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I ++ D+ E      G V  + +FGAFV     +DGLVHIS ++ + V   +DVV     
Sbjct: 631 INAVEDL-ETGMTLPGIVTNITNFGAFVDIGVHQDGLVHISNMADKYVKNPADVVSVHQK 689

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V +++ D  R +I LSMK
Sbjct: 690 VMVTVIEVDIGRKRISLSMK 709


>gi|15679308|ref|NP_276425.1| translation initiation factor IF-2 subunit alpha
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|3122236|sp|O27363|IF2A_METTH RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|2622413|gb|AAB85786.1| translation initiation factor eIF-2, alpha subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 262

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + PE  ++  G V KV+++GAF        ++  +HIS++S+  V    D V+E
Sbjct: 4   MVRRKNEWPEEGELVVGTVHKVLNYGAFATLEEYPGKEAFIHISEVSSGWVKNIRDFVRE 63

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVV--DQNTGK 696
              +  ++L  + R G + +SMK +  DQ T K
Sbjct: 64  NQKIVARVLRVNPRKGHVDVSMKRIREDQRTKK 96


>gi|16801530|ref|NP_471798.1| general stress protein 13 [Listeria innocua Clip11262]
 gi|16414990|emb|CAC97695.1| lin2468 [Listeria innocua Clip11262]
          Length = 117

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|304315429|ref|YP_003850576.1| translation initiation factor 2, alpha subunit eIF2A
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588888|gb|ADL59263.1| predicted translation initiation factor 2, alpha subunit eIF2A
           [Methanothermobacter marburgensis str. Marburg]
          Length = 259

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + PE  ++  G V KV+++GAF        ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRRKNEWPEEGELVVGTVHKVLNYGAFATLEEYPGKEAFIHISEVSSGWVKNIRDFVRE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVV--DQNTGK 696
              +  ++L  + R G + +SMK +  DQ T K
Sbjct: 61  NQKIVARVLRVNPRKGHVDVSMKRIREDQRTKK 93


>gi|75908883|ref|YP_323179.1| ribonuclease PH [Anabaena variabilis ATCC 29413]
 gi|123609297|sp|Q3M9Q2|RNPH_ANAVT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|75702608|gb|ABA22284.1| RNAse PH [Anabaena variabilis ATCC 29413]
          Length = 247

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 22/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+      +   GS L I G+T+ +  V++     E     L+G+ + 
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVA----ESVPKFLAGSGKG 60

Query: 373 DFMMHYNFLPCATGEV--SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     +   S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQQRHERELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A + G  +AL +A       GV    P+   VA +++GL++  + ++ L+ I
Sbjct: 121 QADAGTRTAAITGGFVALAEAISQLLQRGVLERSPLCGQVAAVSVGLLEQ-EAYLDLNYI 179

Query: 480 SGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +DF V    + GI  +Q   + G  S   +   L  A+ G   +L    K 
Sbjct: 180 ---EDVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKA 236

Query: 539 LSE 541
           +++
Sbjct: 237 ITD 239


>gi|254447274|ref|ZP_05060741.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
 gi|198263413|gb|EDY87691.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
          Length = 557

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E++ ++T+      I  G V  + D+GAF+   G  DGL+HI+ ++ +RV   S+V
Sbjct: 180 EEREELLNNLTE----GAIVTGVVKNLTDYGAFLDLGGI-DGLLHITDMAWKRVHHPSEV 234

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  GD + V +L FD ++ ++ L +K
Sbjct: 235 VAVGDEIQVVVLKFDREKTRVSLGLK 260



 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE ++++ G+V  + D+G FV      +GLVH+S++  T +      +V  GD V V +L
Sbjct: 275 PEGSRLF-GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNVNPGKMVALGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L MK    N
Sbjct: 334 DIDEERRRISLGMKQCHAN 352



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S LS + VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDLSWD-VAGEEAVRDFKKGDELEAVVLAVDPER 426

Query: 681 GKIKLSMKVVDQN 693
            +I L +K ++Q+
Sbjct: 427 ERISLGVKQLEQD 439


>gi|332878224|ref|ZP_08445952.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683836|gb|EGJ56705.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 191 VVVSHKALIEADIEEQKKEIISQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLIHITDLS 249

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   S+VV     + V +LDFDD + +I+L +K
Sbjct: 250 WARINHPSEVVSVDQKLNVVILDFDDNKSRIQLGLK 285



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 66/249 (26%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS------------ 540
           + G    IT+  + + +GG+   I +  L  A+      +N  S+V+S            
Sbjct: 220 LEGVVKNITSYGVFVDLGGVDGLIHITDLSWAR------INHPSEVVSVDQKLNVVILDF 273

Query: 541 ---ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG---IVEQTGAKVNIDD--DGT 592
              +SR+QLG      ++   P D +   + +G KV +G   ++   GA V I D  +G 
Sbjct: 274 DDNKSRIQLG----LKQLSKHPWDALAEDLKVGDKV-KGKVVVIADYGAFVEIADGVEGL 328

Query: 593 VKIASSSLA--------------EIEAA--------REM---IRSITDVPEVNKIYK--- 624
           + ++  S +              E+EA         R+M   I+ +T  P +N   K   
Sbjct: 329 IHVSEMSWSTHLRSAQDFVKLGDEVEAVVLTLDRNERKMSLGIKQLTPDPWINITEKYPV 388

Query: 625 -----GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
                G V    +FG FV      DGL+HI+ LS T+++   S+ V  GD + V +L+ D
Sbjct: 389 GSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNTGDKIEVMVLELD 448

Query: 679 DRGKIKLSM 687
             G  KLS+
Sbjct: 449 AEGH-KLSL 456



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V   +L   DR +
Sbjct: 306 KGKVVVIADYGAFVEIADGVEGLIHVSEMSWSTHLRSAQDFVKLGDEVEAVVLTL-DRNE 364

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 365 RKMSLGI 371


>gi|257467123|ref|ZP_05631434.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918254|ref|ZP_07914494.1| LytB protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692129|gb|EFS28964.1| LytB protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 545

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
           +G+V +V+ +GAFV      +GLVHIS  +  ++     +  K G+TV VK+L+F+  G 
Sbjct: 286 EGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEGR 345

Query: 682 KIKLSMKVVDQN 693
           K+KL  K + +N
Sbjct: 346 KLKLGFKQLVEN 357



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           +MDFG  V     R G +HIS++S +R+    D+   G TV  K+L  D+  K IKLS+K
Sbjct: 207 IMDFGLSVMIDHLR-GFIHISEVSWKRLDDLRDLYTVGQTVEAKILSLDEEKKNIKLSIK 265

Query: 689 VVDQN 693
            +  N
Sbjct: 266 QLTPN 270


>gi|186475433|ref|YP_001856903.1| ribonuclease PH [Burkholderia phymatum STM815]
 gi|226736895|sp|B2JEI0|RNPH_BURP8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|184191892|gb|ACC69857.1| ribonuclease PH [Burkholderia phymatum STM815]
          Length = 246

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 24/214 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MNDITKRPSGRTADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPAFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAARDAVAKLLATGRIETSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGT-DSGITAMQ 504
           D I + D+  DED     D  V  T D G   +Q
Sbjct: 173 DGIPVLDLDYDEDSQCDTDMNVVMTGDGGFVEIQ 206


>gi|45358003|ref|NP_987560.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           S2]
 gi|44920760|emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           S2]
          Length = 187

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 18/93 (19%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTS 661
           +T VPE+ ++  G++V V++FGAFV   G  DGL+HISQ+  + V+           +T 
Sbjct: 75  LTYVPELQEVVDGEIVDVVEFGAFVRL-GPLDGLIHISQIMDDFVSFDPKREAIIGKETG 133

Query: 662 DVVKEGDT-----VWVKLLDFDDRG-KIKLSMK 688
            V+++GD      V V L +   RG KI L+M+
Sbjct: 134 KVLEKGDKVRARIVAVSLREEKKRGSKIALTMR 166


>gi|303282543|ref|XP_003060563.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458034|gb|EEH55332.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 343

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG V  V  +GAFV   G   GL+HISQ+S +R+    +V+  GD + V +L  D
Sbjct: 205 VGDVCKGIVQAVKPYGAFVDVGGV-SGLLHISQISHDRIVAVENVLSPGDELKVLILSKD 263

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +R ++ LS K ++ + G
Sbjct: 264 AERSRLSLSTKKLEPSPG 281


>gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
 gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
          Length = 242

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 40/248 (16%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL  A       G+    PI + VA I+ G+V      + L D+  
Sbjct: 125 DGGTRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISAGIVGG----VPLLDLDY 180

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED     D  +  T SG                  ++ +Q    G    L E+ K++  
Sbjct: 181 PEDSGCDSDVNIVMTASG-----------------KIIEIQGTAEGAPFSLEELGKLIGL 223

Query: 542 SRLQLGEF 549
           +   +GE 
Sbjct: 224 AEKGIGEL 231


>gi|261405343|ref|YP_003241584.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
 gi|261281806|gb|ACX63777.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
          Length = 252

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR S+ +R ++    + +   GS     GDT+ ++  T+    DE+    L G  +
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATV----DEKVPPFLKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E +R G  S R +   RL  RA+  V+   A    T+ + 
Sbjct: 57  GWVTAEYSMLPRATQSRNQREANR-GKLSGRTMEIQRLIGRALRSVVNLHALGERTITLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +   ++ G+ +AL             A  PI+  +A I++G+   G   ++
Sbjct: 116 CDVIQADGGTRTTSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIA--GGQALL 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D++ +ED    +D  +  T SG
Sbjct: 174 --DLNYEEDSKAKVDMNLVMTGSG 195


>gi|116250149|ref|YP_765987.1| ribonuclease PH [Rhizobium leguminosarum bv. viciae 3841]
 gi|166228307|sp|Q1MMD1|RNPH_RHIL3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115254797|emb|CAK05871.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +    +   GS L   GDT  +   +L    +E+    L  T +
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G  +AL D 
Sbjct: 117 DVIQADGGTRTASITGGWIALYDC 140


>gi|315224362|ref|ZP_07866196.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287]
 gi|314945752|gb|EFS97767.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 191 VVVSHKALIEADIEEQKKEIISQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLIHITDLS 249

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   S+VV     + V +LDFDD + +I+L +K
Sbjct: 250 WARINHPSEVVSVDQKLNVVILDFDDNKSRIQLGLK 285



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 69/260 (26%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS------------ 540
           + G    IT+  + + +GG+   I +  L  A+      +N  S+V+S            
Sbjct: 220 LEGVVKNITSYGVFVDLGGVDGLIHITDLSWAR------INHPSEVVSVDQKLNVVILDF 273

Query: 541 ---ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG---IVEQTGAKVNIDD--DGT 592
              +SR+QLG      ++   P D + + + +G KV +G   ++   GA V I D  +G 
Sbjct: 274 DDNKSRIQLG----LKQLSKHPWDALADDLKVGDKV-KGKVVVIADYGAFVEIADGVEGL 328

Query: 593 VKIASSSLA--------------EIEAA--------REM---IRSITDVPEVNKIYK--- 624
           + ++  S +              E+EA         R+M   I+ +T  P +N   K   
Sbjct: 329 IHVSEMSWSTHLRSAQDFVKLGDEVEAVILTLDRNERKMSLGIKQLTPDPWINITEKYPV 388

Query: 625 -----GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
                G V    +FG FV      DGL+HI+ LS T+++   S+ V  GD + V +L+ D
Sbjct: 389 GSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNSGDKIEVVVLELD 448

Query: 679 DRG-KIKLSMKVVDQNTGKP 697
             G K+ L  K   Q T  P
Sbjct: 449 AEGHKLSLGHK---QTTPNP 465


>gi|256818976|ref|YP_003140255.1| 30S ribosomal protein S1 [Capnocytophaga ochracea DSM 7271]
 gi|256580559|gb|ACU91694.1| RNA binding S1 domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 191 VVVSHKALIEADIEEQKKEIISQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLIHITDLS 249

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   S+VV     + V +LDFDD + +I+L +K
Sbjct: 250 WARINHPSEVVSVDQKLNVVILDFDDNKSRIQLGLK 285



 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 69/260 (26%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS------------ 540
           + G    IT+  + + +GG+   I +  L  A+      +N  S+V+S            
Sbjct: 220 LEGVVKNITSYGVFVDLGGVDGLIHITDLSWAR------INHPSEVVSVDQKLNVVILDF 273

Query: 541 ---ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG---IVEQTGAKVNIDD--DGT 592
              +SR+QLG      ++   P D + + + +G KV +G   ++   GA V I D  +G 
Sbjct: 274 DDNKSRIQLG----LKQLSKHPWDALADDLKVGDKV-KGKVVVIADYGAFVEIADGVEGL 328

Query: 593 VKIASSSLA--------------EIEAA--------REM---IRSITDVPEVNKIYK--- 624
           + ++  S +              E+EA         R+M   I+ +T  P +N   K   
Sbjct: 329 IHVSEMSWSTHLRSAQDFVKLGDEVEAVILTLDRNERKMSLGIKQLTPDPWINITEKYPV 388

Query: 625 -----GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
                G V    +FG FV      DGL+HI+ LS T+++   S+ V  GD + V +L+ D
Sbjct: 389 GSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNSGDKIEVVVLELD 448

Query: 679 DRG-KIKLSMKVVDQNTGKP 697
             G K+ L  K   Q T  P
Sbjct: 449 AEGHKLSLGHK---QTTPNP 465


>gi|313127247|ref|YP_004037517.1| translation initiation factor 2 subunit alpha (aeif-2a)
           [Halogeometricum borinquense DSM 11551]
 gi|312293612|gb|ADQ68072.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Halogeometricum borinquense DSM 11551]
          Length = 265

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V ++ DFG FV      D  GL HIS++++  +    D V+EG TV  K+
Sbjct: 7   PDSGELVVGKVDEITDFGVFVDLEEYEDTRGLCHISEVASGWIKNVRDHVREGQTVVAKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           LD D    +I LS+K V+++  K
Sbjct: 67  LDVDTGSQQIDLSIKDVNEHQRK 89


>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
 gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
           SAW760]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 39/189 (20%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +  +R    ++  L  + GS+    G+T    VV             L G +RN
Sbjct: 10  RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVV----------FGPLEGRRRN 59

Query: 373 ----DFMMHYNFLPCATGEVSRMGAPSRREIGHGR-------LARRAIHPVLPQTAQFPY 421
               + M+ Y+    AT          RRE  H R       L ++    V+  T   P 
Sbjct: 60  REGAELMVSYSQATFAT--------RKRREQMHDRTMIETAELLKQMYEQVII-TKLLPE 110

Query: 422 T---LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           T   LR+  +I + DGS + A +   +LAL+DAG+P+   V+    G + DG    ++ D
Sbjct: 111 TMIDLRV--QIMQDDGSVTAAVINACTLALIDAGIPMIDIVSAAEGGYI-DGK---MVVD 164

Query: 479 ISGDEDHLG 487
           ++ DE+++G
Sbjct: 165 MNKDEENVG 173


>gi|148244694|ref|YP_001219388.1| 30S ribosomal protein S1 [Candidatus Vesicomyosocius okutanii HA]
 gi|146326521|dbj|BAF61664.1| 30S ribosomal protein S1 [Candidatus Vesicomyosocius okutanii HA]
          Length = 559

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           SI+D   + K  +G V  + D+GAF+      +GLVH+S++  T   A+ S +VK G  V
Sbjct: 269 SISDRLPIGKKVQGTVSNLTDYGAFLSIEEGVEGLVHVSEMDWTNANARPSKIVKLGQEV 328

Query: 671 WVKLLDF-DDRGKIKLSMKVVDQN 693
            V +LD  + + +I LSMK   +N
Sbjct: 329 EVVVLDVQESKHRISLSMKQAQEN 352



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+HI+ +S +RV   S+ +  GD + VK+L++D ++ ++
Sbjct: 197 GIVKNLADYGAFVDLGGV-DGLLHITDISWQRVNHPSEKLTIGDKIIVKVLNYDKEKMRV 255

Query: 684 KLSMK 688
            L +K
Sbjct: 256 SLGLK 260


>gi|86356537|ref|YP_468429.1| transcriptional accessory protein [Rhizobium etli CFN 42]
 gi|86280639|gb|ABC89702.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CFN 42]
          Length = 769

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R
Sbjct: 652 VLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKR 711

Query: 681 GKIKLSMKVVDQNT 694
            +I LSM+  D ++
Sbjct: 712 KRIGLSMRRDDGSS 725


>gi|303228873|ref|ZP_07315686.1| putative general stress protein 13 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516493|gb|EFL58422.1| putative general stress protein 13 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 133

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G V  +  FGAF+     + GLVHIS+++   V   +DV+K  D V VK+L  
Sbjct: 4   EVGSVLNGTVSGITKFGAFIDLGDKQTGLVHISEVAHGYVEDINDVLKVQDAVKVKVLSV 63

Query: 678 DDRGKIKLSMKVVDQNTGKPIV 699
           D   KI LS++   Q   KP V
Sbjct: 64  DG-SKIGLSIR---QTQEKPQV 81


>gi|221124380|ref|XP_002163382.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 874

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 510 VVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEK 568

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 569 NRVSLGLK 576



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G++  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 591 PQGTRMF-GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKIVALGDEVEVMVL 649

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 650 EIDEDKRRISLGMKQCKAN 668



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     +T+    K+G  V   +L  D DR 
Sbjct: 684 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNESGETAVREFKKGQEVEAIVLAVDVDRE 743

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 744 RISLGIKQLDSD 755


>gi|206890956|ref|YP_002249561.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742894|gb|ACI21951.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 534

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 10/85 (11%)

Query: 613 ITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I ++PE   + +IY  +V+K  + G FV   G  +GLV+ S++   R       VKEGD 
Sbjct: 454 IKEIPEKFKIGEIYNAKVIKKTEHGLFVDIEGIVEGLVYNSEIDKNR------TVKEGDE 507

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V ++  D ++ KI LSMK +D+N
Sbjct: 508 IKVIVVKVDKEKRKIGLSMKKIDEN 532



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + DFG FV      DGL+HIS +S T+ +   S + K+G  V   +L  + ++ K
Sbjct: 381 GKVKTITDFGIFVRLPEGVDGLIHISDISWTKHIDHPSQIFKKGQKVDAVILSLEPEKEK 440

Query: 683 IKLSMKVVDQN 693
           + L +K + ++
Sbjct: 441 LSLGIKQLSED 451



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G+V +V DFG FV      +GLVH+S+L        +   +  + + VK+LD D +  K
Sbjct: 294 RGKVTRVEDFGLFVELEEGVEGLVHVSELDWIAPKHPTYYAEVDEWINVKVLDIDRENRK 353

Query: 683 IKLSMK 688
           I LS K
Sbjct: 354 ISLSFK 359


>gi|288957134|ref|YP_003447475.1| small subunit ribosomal protein S1 [Azospirillum sp. B510]
 gi|288909442|dbj|BAI70931.1| small subunit ribosomal protein S1 [Azospirillum sp. B510]
          Length = 568

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E +R   RS  + ++ E  +I +G V  + D+GAFV   G  DGL+H++ +
Sbjct: 175 IVVSRRAVLEESRAEARSELVANLKE-GQILQGVVKNITDYGAFVDLGGV-DGLLHVTDI 232

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +  R+   S+ ++ G TV V+++ F+ +  +I L MK ++ +
Sbjct: 233 AWRRINHPSEALQIGQTVTVQVIRFNPETQRISLGMKQLEAD 274



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+  +KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD 
Sbjct: 285 VSAKFKGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDV 344

Query: 678 D-DRGKIKLSMK 688
           D  + +I L +K
Sbjct: 345 DPQKRRISLGLK 356


>gi|284164159|ref|YP_003402438.1| translation initiation factor 2, subunit alpha [Haloterrigena
           turkmenica DSM 5511]
 gi|284013814|gb|ADB59765.1| translation initiation factor 2, alpha subunit [Haloterrigena
           turkmenica DSM 5511]
          Length = 266

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G++ ++ DFG FV     RD  GL+HIS++++  +    D V+EG  V  K+
Sbjct: 7   PDPGELVVGKIDEIEDFGVFVDLEEYRDKRGLIHISEVASGWIKNVRDHVREGQIVVCKV 66

Query: 675 LDFDDRG-KIKLSMKVVDQN 693
           L+ D+   +I LS+K V+ +
Sbjct: 67  LEIDEESQQIDLSLKDVNDH 86


>gi|31747721|gb|AAO38350.1| Lfe154p1 [Leptospirillum ferrooxidans]
          Length = 369

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E  R+  + +T D  +  ++ +G V  + D+GAF+   G  DGL+HI+ +S  RV+   
Sbjct: 35  LEEWRDRRKKVTMDALKEGEVLEGIVKNITDYGAFIDLGGI-DGLLHITDMSWGRVSNPQ 93

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           D++  GD + V +L  D D G++ L +K
Sbjct: 94  DLMNVGDKLNVVVLKHDRDTGRVSLGLK 121



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  +  G+V  + DFGAFV      DGL+HIS +S T+ V   S++ K+G  V V +L  
Sbjct: 224 VGTVVSGKVKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSELFKKGQKVDVAVLKI 283

Query: 678 D-DRGKIKLSMKVVDQN 693
           + +R ++ L  K + Q+
Sbjct: 284 EKERQRLSLGFKQLSQD 300



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           T  PE +K+   +VV + D+GAF+      +GL+H++++S    V   S ++  GD V  
Sbjct: 133 TRYPEFSKV-AAKVVSITDYGAFLEIEPGVEGLMHVTEMSWNHEVKHPSKIMNVGDVVEA 191

Query: 673 KLLDFDDRG-KIKLSMKVVDQN 693
           ++L  D++  KI L +K +  N
Sbjct: 192 RVLKIDEKNRKISLGLKQLGPN 213



 Score = 37.4 bits (85), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           G + KVMDFG FV      +GLVH+S++  E   +     + G T+ V+++
Sbjct: 318 GVITKVMDFGFFVELAEGVEGLVHVSEVDIESGQRLDQSYQVGSTISVRVI 368


>gi|332706127|ref|ZP_08426198.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
 gi|332355105|gb|EGJ34574.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
          Length = 392

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D+D    + S   A +E  R+M R      EV ++  G V  +  +GAF+   G   
Sbjct: 169 LEVDEDRNRLVLSHRRALVE--RKMNRL-----EVGEVVIGSVRGIKPYGAFIDIGGV-S 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+HIS++S + +     V    D + V ++D D DRG+I LS K ++   G
Sbjct: 221 GLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDADRGRISLSTKQLEPEPG 272


>gi|257453282|ref|ZP_05618581.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium sp. 3_1_5R]
 gi|317059815|ref|ZP_07924300.1| LytB protein [Fusobacterium sp. 3_1_5R]
 gi|313685491|gb|EFS22326.1| LytB protein [Fusobacterium sp. 3_1_5R]
          Length = 545

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
           +G+V +V+ +GAFV      +GLVHIS  +  ++     +  K G+TV VK+L+F+  G 
Sbjct: 286 EGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEGR 345

Query: 682 KIKLSMKVVDQN 693
           K+KL  K + +N
Sbjct: 346 KLKLGFKQLVEN 357



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           +MDFG  V     R G +HIS++S +R+    D+   G TV  K+L  D+  K IKLS+K
Sbjct: 207 IMDFGLSVMIDHLR-GFIHISEVSWKRLDDLRDLYTVGQTVEAKILSLDEEKKNIKLSIK 265

Query: 689 VVDQN 693
            +  N
Sbjct: 266 QLTTN 270


>gi|238650580|ref|YP_002916432.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
 gi|238624678|gb|ACR47384.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
          Length = 568

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
           +     V V ++ FD++  +I L +K +D N
Sbjct: 248 LDFNQKVKVMVIKFDEKTNRISLGIKQLDSN 278


>gi|148555371|ref|YP_001262953.1| 30S ribosomal protein S1 [Sphingomonas wittichii RW1]
 gi|148500561|gb|ABQ68815.1| SSU ribosomal protein S1P [Sphingomonas wittichii RW1]
          Length = 569

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +  +++GQV++     + D+GAFV   G  DGL+H++ LS +RV   ++++  GD V V+
Sbjct: 195 IQSLHEGQVIEGVVKNITDYGAFVDLGGI-DGLLHVTDLSYKRVGHPNEMINIGDVVKVQ 253

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           ++  + D  +I L MK ++ +
Sbjct: 254 IIRINKDTQRISLGMKQLESD 274



 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  + ++GAFV      +GLVH+S++S T++      +V     V V +L+ D D+
Sbjct: 289 FTGRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVVILEVDADK 348

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 349 RRISLGLK 356


>gi|149173903|ref|ZP_01852532.1| ribonuclease PH [Planctomyces maris DSM 8797]
 gi|148847433|gb|EDL61767.1| ribonuclease PH [Planctomyces maris DSM 8797]
          Length = 246

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  E +R I  + G  + T GS L   GDT  +   +L         +S+   ++
Sbjct: 1   MRHDSRQPEQLRPIKVERGYTKATPGSILISAGDTVVLCTASLD--------NSVPPWKK 52

Query: 372 ND------FMMHYNFLPCATGEVSRMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLR 424
           ND          YN LP +T    +  A  R  EI   RL  R++  V+   A  P T+ 
Sbjct: 53  NDENPSGWVTAEYNMLPGSTSPRKQRRADGRSSEIQ--RLIGRSLRAVIDFGALGPRTIT 110

Query: 425 IVSEITESDGSSSMATVCGSSLALMD 450
           +  ++ ++DG +   ++ G  LAL+D
Sbjct: 111 VDCDVLQADGGTRTLSITGGFLALLD 136


>gi|121605690|ref|YP_983019.1| 30S ribosomal protein S1 [Polaromonas naphthalenivorans CJ2]
 gi|120594659|gb|ABM38098.1| SSU ribosomal protein S1P [Polaromonas naphthalenivorans CJ2]
          Length = 561

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++ +
Sbjct: 196 KGIVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEIVAKILKFDTEKNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G++  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PQSTRLF-GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVALGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 428 RISLGIKQLDSD 439


>gi|325104633|ref|YP_004274287.1| SSU ribosomal protein S1P [Pedobacter saltans DSM 12145]
 gi|324973481|gb|ADY52465.1| SSU ribosomal protein S1P [Pedobacter saltans DSM 12145]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 10/85 (11%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V+K+ KGQV++     + DFG F+   G  DGL+HI+ +S  R+    +V+   + V V 
Sbjct: 249 VSKLEKGQVLEGTVKNITDFGVFIDLGGV-DGLLHITDISWGRIEHPKEVLSLDEKVNVV 307

Query: 674 LLDFDDRGK-IKLSMKVVDQNTGKP 697
           +LDFDD  K I L +K   Q T  P
Sbjct: 308 VLDFDDEKKRIALGLK---QLTAHP 329



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG++V V D+GAF+      +GL+H+S++S ++ +    + +K GD +   +L   DR +
Sbjct: 344 KGKIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRNPQEFMKIGDEIEAVVLTL-DREE 402

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 403 RKMSLGI 409


>gi|149923649|ref|ZP_01912045.1| ribosomal protein S1 [Plesiocystis pacifica SIR-1]
 gi|149815464|gb|EDM75001.1| ribosomal protein S1 [Plesiocystis pacifica SIR-1]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL---- 675
            +I  G V  +  +GAFV   G  +GL+HIS+L   RV +  DVV  G+ + VK+L    
Sbjct: 197 GQIVTGTVQTIQPYGAFVDLGGV-EGLIHISELGHGRVERVEDVVSVGEQIRVKVLTIEP 255

Query: 676 -DFDDRGKIKLSMKVVDQNTG 695
            D     +I LS++  +Q  G
Sbjct: 256 GDGKVATRISLSLRQAEQGAG 276


>gi|310657898|ref|YP_003935619.1| nucleoside-triphosphatase [Clostridium sticklandii DSM 519]
 gi|308824676|emb|CBH20714.1| Nucleoside-triphosphatase [Clostridium sticklandii]
          Length = 443

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 24/256 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           ++S  +R+I       +   GS L   GDT    VV      +E+    L  T       
Sbjct: 3   KESNMLREIKITKNFTKYAEGSVLIEFGDT----VVLCNASIEEKVPPFLKNTGTGWISA 58

Query: 377 HYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ LP +T +     S  G    R     RL  RA+  V+        T+ I  ++ ++
Sbjct: 59  EYSMLPRSTHQRKIRDSARGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQA 118

Query: 433 DGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL DA             PI+  V+ +++G+VK G   +   D+  
Sbjct: 119 DGGTRTASITGAFVALCDAMAKLYEKEAIKSFPINAFVSAVSVGIVK-GKPVL---DLCY 174

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           +ED    +D  V  TD G    +Q   +    S+N ++  L  A++G   ++    + + 
Sbjct: 175 EEDSSAEVDMNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIG 234

Query: 541 ESRLQLGEFTPRVEIM 556
           E    L    P+ E++
Sbjct: 235 EPISSLISPRPKQEMV 250


>gi|228473973|ref|ZP_04058714.1| 30S ribosomal protein S1 [Capnocytophaga gingivalis ATCC 33624]
 gi|228274487|gb|EEK13328.1| 30S ribosomal protein S1 [Capnocytophaga gingivalis ATCC 33624]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  R I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 191 VVVSHKALIEADIEEQKREIIGQLEKGQVLEGIVKNITSYGVFVDLGGV-DGLIHITDLS 249

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   ++V++    + V +LDFDD + +I+L +K
Sbjct: 250 WSRINHPTEVLELDQKINVVILDFDDNKSRIQLGLK 285



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +++D  +V    KG+VV + D+GAFV      +GL+H+S++S +  +    D V  GD V
Sbjct: 294 ALSDELKVGDKVKGKVVVIADYGAFVEVAEGVEGLIHVSEMSWSTHLRSAQDFVNIGDEV 353

Query: 671 WVKLLDFD-DRGKIKLSMK 688
              +L  D D  K+ L +K
Sbjct: 354 EAVILTLDRDERKMSLGIK 372


>gi|182413325|ref|YP_001818391.1| RNA-binding S1 domain-containing protein [Opitutus terrae PB90-1]
 gi|177840539|gb|ACB74791.1| RNA binding S1 domain protein [Opitutus terrae PB90-1]
          Length = 794

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVHISQL+   V   + VVK    V V +++ D  R +I
Sbjct: 670 GIVTNVTAFGAFVDIGVHQDGLVHISQLADTFVKDAATVVKPQQKVTVTVVEVDLARNRI 729

Query: 684 KLSMK 688
            LSM+
Sbjct: 730 ALSMR 734


>gi|330507638|ref|YP_004384066.1| translation initiation factor 2 subunit alpha [Methanosaeta
           concilii GP-6]
 gi|328928446|gb|AEB68248.1| translation initiation factor 2, alpha subunit [Methanosaeta
           concilii GP-6]
          Length = 257

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE   +    V +V+DFGAFV    + G + GL+HIS++++  +    D V+EG  +  K
Sbjct: 7   PEPGSLVVCTVTQVVDFGAFVSIDEYAG-KQGLIHISEVASGWIKYIRDHVREGQKIVCK 65

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +L+ D  R  I LS+K V+++
Sbjct: 66  VLNVDTSRHHIDLSLKDVNEH 86


>gi|218245301|ref|YP_002370672.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257058336|ref|YP_003136224.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
 gi|218165779|gb|ACK64516.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
 gi|256588502|gb|ACU99388.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V K+  +G FV   G   GL+HI+Q+S  R+   + + K G  + V +L+ D+ +G+I
Sbjct: 204 GKVAKIQPYGIFVDLNGVT-GLLHITQISGLRIDDLNTLFKFGQEIQVMILNIDEYKGRI 262

Query: 684 KLSMKVVDQNTGK 696
            LS KV++   G+
Sbjct: 263 SLSTKVLENYPGE 275


>gi|219127458|ref|XP_002183952.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404675|gb|EEC44621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 966

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +G V  + DFGAFV F G  DGL+HISQ+   RVA  + ++ +G
Sbjct: 728 QGTVRNLADFGAFVDFGGPHDGLLHISQMMANRVALDTLLIGQG 771


>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
 gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 12/207 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+ +R+DGR S  +R I  ++G+  +  GS+   +G+T+ +  V        Q    
Sbjct: 3   LLSDEGLRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVY----GPHQAPAK 58

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
            S  +       Y+    +TGE  +     R+        ++A+   + +T  +P + + 
Sbjct: 59  KSNHEECVVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAI-KTDLYPKSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+  +DG +  A+V  ++LAL+DAG+ + + V      L       + L D+S  E+
Sbjct: 118 VYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGK----VPLMDVSNLEE 173

Query: 485 HLGHMDFKVAG-TDSG-ITAMQMDMKI 509
             G     VA   +SG I  M+M  + 
Sbjct: 174 MSGGPTLTVASLPNSGKIAFMEMSQRF 200


>gi|18403854|ref|NP_566737.1| S1 RNA-binding domain-containing protein [Arabidopsis thaliana]
 gi|9293944|dbj|BAB01847.1| unnamed protein product [Arabidopsis thaliana]
 gi|15146284|gb|AAK83625.1| AT3g23700/MYM9_3 [Arabidopsis thaliana]
 gi|22655022|gb|AAM98102.1| At3g23700/MYM9_3 [Arabidopsis thaliana]
 gi|332643282|gb|AEE76803.1| ribosomal protein S1-like RNA-binding domain-containing protein
           [Arabidopsis thaliana]
          Length = 392

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 6/81 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V  ++ G+V  V D+GAF+H           GLVH+S++S + V    DV+++GD V V 
Sbjct: 195 VGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVI 254

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           + + D ++ +I LS+K ++ +
Sbjct: 255 VTNIDKEKSRITLSIKQLEDD 275


>gi|302687680|ref|XP_003033520.1| hypothetical protein SCHCODRAFT_82121 [Schizophyllum commune H4-8]
 gi|300107214|gb|EFI98617.1| hypothetical protein SCHCODRAFT_82121 [Schizophyllum commune H4-8]
          Length = 1147

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTE-RVAKTSDVVKEGD 668
           + D P V KIY G+V  V DFGAFV      G  +G+VH+S +    R+   +D++    
Sbjct: 184 LDDRPVVFKIYDGKVTGVKDFGAFVQLEGIAGRAEGMVHVSNIQKGVRINSAADLLSRNQ 243

Query: 669 TVWVKLLDFDDRGKIKLSMK 688
            V VK++      +I LSMK
Sbjct: 244 PVKVKVMAVAG-SRITLSMK 262


>gi|218671814|ref|ZP_03521483.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli GR56]
          Length = 256

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 126 EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 184

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V V++++ D  R +I LSM+  D
Sbjct: 185 DVVKVRVVEVDAKRKRIGLSMRRDD 209


>gi|146318089|ref|YP_001197801.1| hypothetical protein SSU05_0434 [Streptococcus suis 05ZYH33]
 gi|146320268|ref|YP_001199979.1| hypothetical protein SSU98_0421 [Streptococcus suis 98HAH33]
 gi|253751281|ref|YP_003024422.1| S1 RNA binding domain protein [Streptococcus suis SC84]
 gi|253753182|ref|YP_003026322.1| S1 RNA binding domain protein [Streptococcus suis P1/7]
 gi|253755005|ref|YP_003028145.1| S1 RNA binding domain protein [Streptococcus suis BM407]
 gi|145688895|gb|ABP89401.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus suis 05ZYH33]
 gi|145691074|gb|ABP91579.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus suis 98HAH33]
 gi|251815570|emb|CAZ51153.1| putative S1 RNA binding domain protein [Streptococcus suis SC84]
 gi|251817469|emb|CAZ55210.1| putative S1 RNA binding domain protein [Streptococcus suis BM407]
 gi|251819427|emb|CAR44902.1| putative S1 RNA binding domain protein [Streptococcus suis P1/7]
 gi|292557850|gb|ADE30851.1| RNA binding S1 [Streptococcus suis GZ1]
 gi|319757562|gb|ADV69504.1| hypothetical protein SSUJS14_0401 [Streptococcus suis JS14]
          Length = 123

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG V  +  +GAFV       GL+HIS++ T  V    D +K G  V V+++DFD+   K
Sbjct: 8   KGTVTGIQPYGAFVQLENGTTGLIHISEIKTGFVDNIYDHLKLGQEVLVQVVDFDEYTEK 67

Query: 683 IKLSMKVVDQNTGK 696
             LS++ +++   K
Sbjct: 68  ASLSIRTLEEEQQK 81


>gi|50119101|ref|YP_048268.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
 gi|61215912|sp|Q6DAW2|RNPH_ERWCT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|49609627|emb|CAG73060.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+VK G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVANGKLKKNPMKGMVAAVSVGIVK-GE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|116623389|ref|YP_825545.1| 30S ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226551|gb|ABJ85260.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 571

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + +G+V  + DFGAF+      DGLVH+S LS T+RV   S+V+K+G  V   +L+ 
Sbjct: 375 VGSVVEGRVRNMTDFGAFIEIEEGIDGLVHVSDLSWTKRVKHPSEVLKKGMIVQAVILNI 434

Query: 678 D 678
           D
Sbjct: 435 D 435



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN    G+VV V D+GAFV      +GL+HIS+++ + R+   S VVK GD V   +L+ 
Sbjct: 288 VNGRVIGRVVNVTDYGAFVELEPGVEGLIHISEMTWSRRMKHPSKVVKAGDQVEAVVLEV 347

Query: 678 DDRG-KIKLSMKVVDQN 693
             +  +I L +K ++ N
Sbjct: 348 HPKDRRISLGLKQLEPN 364



 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V  + D+GAF+   G  DGL+H++ +S  R+   S++++ G  + VK+L F DR K +
Sbjct: 209 GTVKNLTDYGAFIDLGGI-DGLLHVTDMSYGRITHPSEMLQVGQEITVKVLKF-DRTKER 266

Query: 685 LSMKV 689
           +S+ +
Sbjct: 267 VSLGI 271


>gi|319650349|ref|ZP_08004492.1| hypothetical protein HMPREF1013_01097 [Bacillus sp. 2_A_57_CT2]
 gi|317397910|gb|EFV78605.1| hypothetical protein HMPREF1013_01097 [Bacillus sp. 2_A_57_CT2]
          Length = 132

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 6   EVGSVITGKVTGIQPYGAFVALDENTQGLVHISEVTHGFVKDINEHLKVGDEVKVKVLSV 65

Query: 678 DDR-GKIKLSMKVVDQ 692
           D+  GKI LS++  ++
Sbjct: 66  DEEAGKIGLSIRATEE 81


>gi|222110591|ref|YP_002552855.1| 30S ribosomal protein s1 [Acidovorax ebreus TPSY]
 gi|221730035|gb|ACM32855.1| ribosomal protein S1 [Acidovorax ebreus TPSY]
          Length = 561

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 194 IVNGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PSGTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     +++    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|91787671|ref|YP_548623.1| 30S ribosomal protein S1 [Polaromonas sp. JS666]
 gi|91696896|gb|ABE43725.1| SSU ribosomal protein S1P [Polaromonas sp. JS666]
          Length = 561

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++ +
Sbjct: 196 KGIVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEIVAKILKFDTEKNR 254

Query: 683 IKLSMK 688
           + L +K
Sbjct: 255 VSLGLK 260



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G++  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PQGTRLF-GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVALGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 428 RISLGIKQLDSD 439


>gi|33151538|ref|NP_872891.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
 gi|61216021|sp|Q7VP10|RNPH_HAEDU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33147758|gb|AAP95280.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++  +R +       +   GS L   G+T+ +   ++    +E     L G Q+
Sbjct: 1   MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASI----EESVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRATHSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA       GV    P+   VA I++G+V++      +
Sbjct: 117 DVIQADGGTRTAAITGACVALQDAIHKLIADGVLKTNPLKGLVAAISVGIVENE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V   + G
Sbjct: 173 CDLEYVEDAKAETDMNVVMVEDG 195


>gi|298376641|ref|ZP_06986596.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_19]
 gi|298266519|gb|EFI08177.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_19]
          Length = 708

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV      +GLVHIS+L+   V+  + VV     
Sbjct: 628 VKTIEDLKE-GQVLPGIVTNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D  R +++LSMK
Sbjct: 687 VKVKVLSVDLSRKRVQLSMK 706


>gi|326774261|ref|ZP_08233526.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326781494|ref|ZP_08240759.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654594|gb|EGE39440.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326661827|gb|EGE46673.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 278

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  GQV K++ FGAFV      +GLVH ++   + V     +V EG+ + V++++ D  R
Sbjct: 201 VTTGQVTKLVPFGAFVRIADGVEGLVHNTEFRDDPVEHPGQIVSEGEEITVRIVEVDLVR 260

Query: 681 GKIKLSMKVVDQN 693
            ++ LS + + QN
Sbjct: 261 HRLTLSTRNLPQN 273



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 623 YKGQVVKVMDFGAFVHFCGARD----GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           ++GQV  V +FG FV+  G  D    G +   +LS  R+   +D V  G+ V  +++  D
Sbjct: 114 HRGQVQSVHNFGVFVNLDGEPDNQCTGFIRGPELSWRRIGHPADAVTAGERVVGEIIGVD 173

Query: 679 D-RGKIKLSMKVVDQN 693
             RG+++LS+K + ++
Sbjct: 174 TRRGQVQLSLKALQED 189


>gi|269122527|ref|YP_003310704.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616405|gb|ACZ10773.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
          Length = 721

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FG FV      D L+H+S+LS + ++  + V+  G+ + VK+L  D +R
Sbjct: 652 ILEGTVRNVAKFGVFVDIGLKNDALIHVSELSNKFISDPTKVLSVGEIIKVKILSIDKNR 711

Query: 681 GKIKLSMK 688
           G++ L+ K
Sbjct: 712 GRVALTRK 719


>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
 gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR    +R I+   G   +  GS+L   GDT+ +   +      E     L G  +
Sbjct: 5   ARADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASF----TEGVPRWLKGEGK 60

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 61  GWVTAEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL D+       G+      P+   V+ I++G++ DG   +
Sbjct: 121 DVLQADGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGII-DGTPML 179

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED     D  V  T SG
Sbjct: 180 ---DLPYTEDVRAETDMNVVVTGSG 201


>gi|256840817|ref|ZP_05546325.1| RNA-binding protein [Parabacteroides sp. D13]
 gi|256738089|gb|EEU51415.1| RNA-binding protein [Parabacteroides sp. D13]
          Length = 708

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV      +GLVHIS+L+   V+  + VV     
Sbjct: 628 VKTIEDLKE-GQVLPGIVTNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D  R +++LSMK
Sbjct: 687 VKVKVLSVDLSRKRVQLSMK 706


>gi|255085236|ref|XP_002505049.1| predicted protein [Micromonas sp. RCC299]
 gi|226520318|gb|ACO66307.1| predicted protein [Micromonas sp. RCC299]
          Length = 387

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG V  V  +GAFV   G   GL+HISQ+S +R+    +V+  GD + V +L  D
Sbjct: 252 VGDVCKGVVQAVKPYGAFVDVGGV-SGLLHISQISHDRIVAVENVLAPGDELKVLILSKD 310

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +R ++ LS K ++ + G
Sbjct: 311 AERSRLSLSTKKLEPSPG 328


>gi|302035807|ref|YP_003796129.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
 gi|300603871|emb|CBK40203.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
          Length = 571

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V ++   L E    R    +++ + E  ++ +G V  + D+GAF+   G  DGL+HI+
Sbjct: 172 GNVVVSRRVLLEETRDRRRQTTLSTLKE-GQLIQGTVKNITDYGAFIDLGGI-DGLLHIT 229

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S  RV   S++ +  D V V +L +D + G+I L +K
Sbjct: 230 DMSWGRVGHPSELFQVSDKVEVTVLKYDRETGRISLGLK 268



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V K+ DFG F+   G  +GL+HIS++  +   +  +  K GD V  K++  D D  KI
Sbjct: 465 GKVSKIADFGLFIELDGDVEGLIHISEVGLDANVRMEEKFKPGDDVTAKIIKVDRDERKI 524

Query: 684 KLSMK 688
            LS++
Sbjct: 525 ALSLR 529



 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
           +G+VV + D+GAFV      +GLVH+S++S T  V   S VV  GD V   +L+ D    
Sbjct: 289 RGRVVSLTDYGAFVELEPGVEGLVHVSEMSWTHEVRHPSRVVSVGDQVEAAVLNIDPGSR 348

Query: 682 KIKLSMKVVDQN 693
           KI L MK    N
Sbjct: 349 KISLGMKQTAPN 360



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +G+V  + DFGAFV      DGL+HIS +S T+ +   S++ K+G  V
Sbjct: 376 EGKVKSLTDFGAFVGLEEGIDGLIHISDMSWTKHIKHPSELFKKGQKV 423


>gi|197103656|ref|YP_002129033.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1]
 gi|196477076|gb|ACG76604.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1]
          Length = 569

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    ++ + E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 174 GNIVVSRRAILEEARAEQRTELVSQLQE-GEVREGVVKNITDYGAFVDLGGI-DGLLHVT 231

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +S +RV   S V+  GDTV V+++  + +  +I L MK
Sbjct: 232 DMSWKRVNHPSQVLAVGDTVKVQIVKINPETQRISLGMK 270


>gi|191638230|ref|YP_001987396.1| Transcription accessory protein [Lactobacillus casei BL23]
 gi|190712532|emb|CAQ66538.1| Transcription accessory protein [Lactobacillus casei BL23]
 gi|327382260|gb|AEA53736.1| S1 RNA binding domain protein [Lactobacillus casei LC2W]
 gi|327385457|gb|AEA56931.1| S1 RNA binding domain protein [Lactobacillus casei BD-II]
          Length = 725

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD   VW++ +D   R 
Sbjct: 655 EGTVRNVVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKTVVAIGDIVEVWIESVDL-ARE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|150026513|ref|YP_001297339.1| RNA-binding protein [Flavobacterium psychrophilum JIP02/86]
 gi|149773054|emb|CAL44538.1| Putative RNA binding protein with S1 RNA-binding domain
           [Flavobacterium psychrophilum JIP02/86]
          Length = 718

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+     I  G V  + +FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 639 VKTIKDL-RTGMILPGIVNNITNFGCFVDIGTKESGLVHISQLKAGFVSDVNEVVKLHQH 697

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V VK+ + D DR +I+L+M
Sbjct: 698 VTVKVTEVDEDRKRIQLTM 716


>gi|149371381|ref|ZP_01890867.1| 30S ribosomal protein S1 [unidentified eubacterium SCB49]
 gi|149355519|gb|EDM44078.1| 30S ribosomal protein S1 [unidentified eubacterium SCB49]
          Length = 621

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           IT    V  ++KG V    +FG FV      DGL++IS LS T+++   S+    GDT+ 
Sbjct: 416 ITTKYPVGSLHKGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFTNVGDTLE 475

Query: 672 VKLLDFDDRG-KIKLSMKVVDQN 693
           VK+L+ D  G K+ L  K  ++N
Sbjct: 476 VKVLELDVEGRKLSLGHKQTEEN 498



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 225 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLVHITDLS 283

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   +++V+    + V +LDFD D+ +I+L +K
Sbjct: 284 WSRINHPNEIVELDQKLNVVILDFDEDKTRIQLGLK 319



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V  ++L   DR +
Sbjct: 340 EGKVVVIADYGAFIEVTEGVEGLIHVSEMSWSTHLRSAQDFVKVGDKVNAQILTL-DREE 398

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 399 RKMSLGI 405


>gi|150403357|ref|YP_001330651.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           C7]
 gi|150034387|gb|ABR66500.1| DNA-directed RNA polymerase [Methanococcus maripaludis C7]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 18/93 (19%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTS 661
           +T VPE+ ++  G++V V++FGAFV   G  DGL+HISQ+  + V+           +T 
Sbjct: 75  LTYVPELQEVVDGEIVDVVEFGAFVR-LGPLDGLIHISQIMDDFVSFDPKREAIIGKETG 133

Query: 662 DVVKEGDT-----VWVKLLDFDDRG-KIKLSMK 688
            V+++GD      V V L +   RG KI L+M+
Sbjct: 134 KVLEKGDKVRARIVAVSLREEKKRGSKIALTMR 166


>gi|255013293|ref|ZP_05285419.1| RNA-binding protein [Bacteroides sp. 2_1_7]
          Length = 708

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV      +GLVHIS+L+   V+  + VV     
Sbjct: 628 VKTIEDLKE-GQVLPGIVTNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D  R +++LSMK
Sbjct: 687 VKVKVLSVDLSRKRVQLSMK 706


>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I AQ+       GSS   +G+T+ +V VT G  E  Q        ++
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVT-GPHEGRQSGQRGGADKQ 71

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
               +  NF   +  E  +  +  R  E+ H    R A   VL        T+ +   I 
Sbjct: 72  AKVEVEINFAGFSGVERRKRKSDKRTSEMEH--CIRSAFEGVLLLHLYPHSTITLNIHIV 129

Query: 431 ESDGSSSMATVCGSSLALMDAGVPIS 456
             DGS   A +  S+LAL+DAG+P++
Sbjct: 130 SQDGSLLAACINASTLALIDAGIPMT 155


>gi|326560464|gb|EGE10846.1| 30S ribosomal protein S1 [Moraxella catarrhalis 7169]
 gi|326564205|gb|EGE14441.1| 30S ribosomal protein S1 [Moraxella catarrhalis 12P80B1]
 gi|326565804|gb|EGE15966.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC1]
 gi|326570457|gb|EGE20497.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC8]
 gi|326577136|gb|EGE27030.1| 30S ribosomal protein S1 [Moraxella catarrhalis O35E]
          Length = 557

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A R E++  + +  EV  I K     + D+GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 177 AENSAERDELLAKLEEGMEVEGIVK----NLTDYGAFVDLGGI-DGLLHITDMAWKRIKH 231

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S+ V+ G  + VK+L FD +R ++ L +K
Sbjct: 232 PSEAVEVGQDLKVKVLKFDRERNRVSLGLK 261



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ 
Sbjct: 277 VGTITKARVTNLTDYGCFAEIAEGIEGLVHVSEMDHTNKNIHPSKVVQVGDEVNVMVLEI 336

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 337 DGERRRISLGIK 348


>gi|15604379|ref|NP_220895.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Madrid E]
 gi|6226091|sp|Q9ZD28|RS1_RICPR RecName: Full=30S ribosomal protein S1
 gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii]
 gi|292572134|gb|ADE30049.1| 30S ribosomal protein S1 [Rickettsia prowazekii Rp22]
          Length = 568

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 6/91 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  EM+  I +      + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V
Sbjct: 193 EARDEMLSKIKE----GIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEV 247

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           ++    V V ++ FD++ K I L +K +D N
Sbjct: 248 LEFNQKVKVMVIKFDEKTKRISLGIKQLDSN 278


>gi|109000938|ref|XP_001098176.1| PREDICTED: nucleolar protein of 40 kDa isoform 1 [Macaca mulatta]
 gi|73921228|sp|Q95KF9|NO40_MACFA RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName:
           Full=Putative S1 RNA-binding domain protein; Short=PS1D
           protein; AltName: Full=Zinc finger CCHC
           domain-containing protein 17
 gi|13874572|dbj|BAB46900.1| hypothetical protein [Macaca fascicularis]
          Length = 193

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 3/48 (6%)

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGK 696
           +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK
Sbjct: 1   MSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGK 48


>gi|303230962|ref|ZP_07317705.1| putative general stress protein 13 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514344|gb|EFL56343.1| putative general stress protein 13 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 133

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G V  +  FGAF+     + GLVHIS+++   V   +DV+K  D V VK+L  
Sbjct: 4   EVGSVLNGTVSGITKFGAFIDLGDKQTGLVHISEVAHGYVEDINDVLKVQDAVKVKVLSV 63

Query: 678 DDRGKIKLSMKVVDQNTGKPIV 699
           D   KI LS++   Q   KP V
Sbjct: 64  DG-SKIGLSIR---QTQEKPQV 81


>gi|114777721|ref|ZP_01452681.1| ribosomal protein S1 [Mariprofundus ferrooxydans PV-1]
 gi|114551937|gb|EAU54471.1| ribosomal protein S1 [Mariprofundus ferrooxydans PV-1]
          Length = 621

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V ++ DFGAFV   G  D L+H+S +S  R+   S+++  G +V V+++  + + GK+
Sbjct: 264 GEVKRLADFGAFVDIGGV-DALLHVSDVSWRRIKHPSEMLSVGQSVSVEIVKLNAETGKV 322

Query: 684 KLSMKVVDQN 693
            +SMK +  +
Sbjct: 323 SVSMKALQSD 332



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG FVH     DGLVH+  LS E+  A   +   +G  V   +L  D ++ +
Sbjct: 436 GKIKNITDFGFFVHVADGMDGLVHMENLSWEKSGAAAMEPYSKGQEVEAVVLGVDVEKQR 495

Query: 683 IKLSMK 688
           I L +K
Sbjct: 496 IALGIK 501


>gi|121594810|ref|YP_986706.1| 30S ribosomal protein S1 [Acidovorax sp. JS42]
 gi|120606890|gb|ABM42630.1| SSU ribosomal protein S1P [Acidovorax sp. JS42]
          Length = 561

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 194 IVNGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 275 PSGTRLF-GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVSLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 334 EIDEDKRRISLGMKQCKAN 352



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     +++    K+G  V   +L  D DR 
Sbjct: 368 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRE 427

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 428 RISLGIKQLD 437


>gi|47220309|emb|CAG03343.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2384

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A +E++  + R+  D     ++  G +V + DFG  V F     GLV +S+LS+E +++ 
Sbjct: 473 ALVESSLPLFRTFADA-RPGRVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRP 531

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            DV   G  +  K+L  D  + K+ LS K
Sbjct: 532 EDVFYVGQVLKTKVLQCDRQKAKMLLSFK 560



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 601  AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            A +E++  + R+  D     ++  G +V + DFG  V F     GLV +S+LS+E +++ 
Sbjct: 1176 ALVESSLPLFRTFADA-RPGRVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRP 1234

Query: 661  SDV------VKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             DV        EG        +FD +   KL  KV+ + 
Sbjct: 1235 EDVFYVGQRAMEGAAEEASAPEFDCQVGQKLEAKVLKKT 1273


>gi|260220854|emb|CBA28836.1| 30S ribosomal protein S1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 587

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++
Sbjct: 223 VVQGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEK 281

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 282 NRVSLGLK 289



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G++  + D+GAFV      +GLVH+S++  T +    S +V  GD V V +L
Sbjct: 304 PQGTRMF-GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKIVALGDEVEVMVL 362

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 363 EIDEDKRRISLGMKQCKAN 381



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG FV      DGLVH+S LS     +T+    K+G  V   +L  D DR 
Sbjct: 397 KGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNESGETAVREFKKGQEVEAIVLAVDVDRE 456

Query: 682 KIKLSMKVVDQN 693
           +I L +K +D +
Sbjct: 457 RISLGIKQLDSD 468


>gi|162455162|ref|YP_001617529.1| 30S ribosomal protein S1 [Sorangium cellulosum 'So ce 56']
 gi|161165744|emb|CAN97049.1| 30S ribosomal protein S1 [Sorangium cellulosum 'So ce 56']
          Length = 562

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG +  + ++GAFV   G  DGL+HI+ +S  RV   S+V + GD V VK+L ++ D  +
Sbjct: 197 KGTIKNITEYGAFVDLGGI-DGLLHITDMSWGRVNHPSEVFQVGDEVLVKVLKYNADTER 255

Query: 683 IKLSMK 688
           + L +K
Sbjct: 256 VSLGLK 261



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD 679
           K  +G+V+ + D+GAFV      +GL+H+S++S T++V   S +++ G  +  ++L+ D 
Sbjct: 279 KKVRGKVMSITDYGAFVELEPGVEGLIHVSEMSWTKKVKHPSKLLEVGQELECQVLEVDA 338

Query: 680 RGK-IKLSMK 688
           R K I L +K
Sbjct: 339 RAKRISLGLK 348


>gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN]
 gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923]
 gi|585906|sp|P37939|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808596|sp|B8ZR59|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae]
 gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae]
 gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R +    G  +   GS L   G T+ +   +      E       G+ +
Sbjct: 3   TRADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTAS----PTEGVPRWRKGSGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   +   R  G      RL  R++   +   A    T+ +  
Sbjct: 59  GWLTAEYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A V G+ +AL DA              P+S  +A +++G+V    D  I
Sbjct: 119 DVLQADGGTRTAAVTGAYVALADAVTYLSAAGRLLDPRPLSCAIAAVSVGVV----DGRI 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+S +ED    +D  V  TD+G
Sbjct: 175 RVDLSYEEDSRAEVDMNVIATDTG 198


>gi|332312793|gb|EGJ25888.1| General stress protein 13 [Listeria monocytogenes str. Scott A]
          Length = 124

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 12  KVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 71

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 72  DEEKNKISLSIRATEE 87


>gi|319939664|ref|ZP_08014023.1| general stress protein GSP13 [Streptococcus anginosus 1_2_62CV]
 gi|319811253|gb|EFW07559.1| general stress protein GSP13 [Streptococcus anginosus 1_2_62CV]
          Length = 124

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++ T  +    +++   D V V+++D+D+  GK
Sbjct: 8   KGRITGIQPYGAFVELETGDMGLIHISEIRTGYIENIHEILHVDDQVLVQVMDYDEFSGK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  ASLSMRTLEE 77


>gi|229062175|ref|ZP_04199499.1| Ribonuclease PH [Bacillus cereus AH603]
 gi|228717158|gb|EEL68834.1| Ribonuclease PH [Bacillus cereus AH603]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 15  MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 70

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 71  GWVTAEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 130

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +A++ A
Sbjct: 131 DVIQADGGTRTASITGAYVAMVLA 154


>gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H]
 gi|123634261|sp|Q48AN3|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H]
          Length = 237

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R ++          GS L   GDT+ I   T+    +      L G  +
Sbjct: 1   MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATV----EVGVPRFLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A S ++ G      RL  RA+   +   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+DA             P+   +A +++G+ K G+    +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYK-GEP---V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED     D  V  TD+G
Sbjct: 173 ADLDYPEDSAADTDMNVVMTDTG 195


>gi|307154019|ref|YP_003889403.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306984247|gb|ADN16128.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G+V K+  +G FV   GA  GL+HI+Q+S   +   + + K G ++ V +L+ D
Sbjct: 198 VGTLVEGKVAKIQPYGVFVDINGA-TGLLHITQVSGVHIDSLTTIFKIGQSIKVLILEID 256

Query: 679 D-RGKIKLSMKVVDQNTGK 696
           + + +I LS KV++   G+
Sbjct: 257 EYKNRIALSTKVLESYPGE 275


>gi|301309904|ref|ZP_07215843.1| S1 RNA binding domain protein [Bacteroides sp. 20_3]
 gi|300831478|gb|EFK62109.1| S1 RNA binding domain protein [Bacteroides sp. 20_3]
          Length = 708

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV      +GLVHIS+L+   V+  + VV     
Sbjct: 628 VKTIEDLKE-GQVLPGIVTNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D  R +++LSMK
Sbjct: 687 VKVKVLSVDLSRKRVQLSMK 706


>gi|296274213|ref|YP_003656844.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098387|gb|ADG94337.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
          Length = 702

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   EIE + + I++I D+ E      G V  + DFGAFV      DG++HISQ+S +RV
Sbjct: 612 SEFDEIEFSDD-IKTIEDLKE-GFFVSGIVRNITDFGAFVDIGLKNDGMIHISQMSEKRV 669

Query: 658 AKTSDVVKEGDTV-WVKLLDFD-DRGKIKLSMK 688
           +  S+++     +  +K++  D ++ K+ LS+K
Sbjct: 670 SHPSEILSINQQLKKIKVISIDLEKNKVGLSLK 702


>gi|227529467|ref|ZP_03959516.1| S1 domain RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350552|gb|EEJ40843.1| S1 domain RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
          Length = 735

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVH+S++S + +      V  GD V V + D D  R +
Sbjct: 662 QGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIKDPRSAVSVGDIVDVWIDDVDLKRQR 721

Query: 683 IKLSM 687
           I+L+M
Sbjct: 722 IQLTM 726


>gi|190348684|gb|EDK41184.2| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN  ++G V I     +E+     +++   D+ E  ++Y+G V +V DFG FV   G
Sbjct: 1180 GKVVNCKEEGRVLITLKE-SEVNGELNVLKKFEDLKE-GEVYEGSVRQVTDFGVFVKLDG 1237

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
              +  GL H S+++  +      +  EGD V VK+L  + ++ ++ L MKV
Sbjct: 1238 TLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEKKQLSLGMKV 1288


>gi|134046224|ref|YP_001097709.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           C5]
 gi|132663849|gb|ABO35495.1| DNA-directed RNA polymerase, subunit E' [Methanococcus maripaludis
           C5]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 18/93 (19%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTS 661
           +T VPE+ ++  G++V V++FGAFV   G  DGL+HISQ+  + V+           +T 
Sbjct: 75  LTYVPELQEVVDGEIVDVVEFGAFVR-LGPLDGLIHISQIMDDFVSFDPKREAIIGKETG 133

Query: 662 DVVKEGDT-----VWVKLLDFDDRG-KIKLSMK 688
            V+++GD      V V L +   RG KI L+M+
Sbjct: 134 KVLEKGDKVRARIVAVSLREEKKRGSKIALTMR 166


>gi|320526971|ref|ZP_08028160.1| general stress protein 13 [Solobacterium moorei F0204]
 gi|320132556|gb|EFW25097.1| general stress protein 13 [Solobacterium moorei F0204]
          Length = 122

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I +G++  +  +GAFV       GL+HIS++S   V   S  V  GD V +K+L+ DD+
Sbjct: 7   QIVEGKITGIQPYGAFVALEHHVSGLIHISEISDGFVKDISKFVAVGDVVKLKVLECDDK 66

Query: 681 -GKIKLSMKVVDQ----NTGKPI 698
              +KLS+K + +    N  KP+
Sbjct: 67  SSHVKLSLKALQKTHSRNRRKPM 89


>gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1]
 gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     +      E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T       S  G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTSEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V DG+  + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIV-DGEPLL- 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED     D  V  T  G
Sbjct: 177 --DLCYEEDVRAETDMNVVCTGDG 198


>gi|167756737|ref|ZP_02428864.1| hypothetical protein CLORAM_02284 [Clostridium ramosum DSM 1402]
 gi|237734456|ref|ZP_04564937.1| polyribonucleotide nucleotidyltransferase [Mollicutes bacterium D7]
 gi|167702912|gb|EDS17491.1| hypothetical protein CLORAM_02284 [Clostridium ramosum DSM 1402]
 gi|229382276|gb|EEO32367.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp. D7]
          Length = 125

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 621 KIYKGQVVKV-----MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           KI +G ++ V       +GAF        GL+HIS++S + V      VK G+++ VK++
Sbjct: 4   KIKRGDIIDVKITGIQPYGAFASLPDNSTGLIHISEISDKFVKSIDSFVKVGESIKVKVI 63

Query: 676 DFD-DRGKIKLSMKVVDQ 692
           DFD +    KLS+K +D 
Sbjct: 64  DFDQETNHAKLSLKAIDN 81


>gi|85706900|ref|ZP_01037990.1| ribonuclease PH [Roseovarius sp. 217]
 gi|85668511|gb|EAQ23382.1| ribonuclease PH [Roseovarius sp. 217]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G+L+   GS L   GDT  +   T+    +E+    + G+  
Sbjct: 1   MRPSGRNLSEMRPVSIETGVLKHAEGSCLIKIGDTHVLCTATI----EERVPPFVKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A + ++ G      RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTNSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 DVIQADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLIDPVAAVSCGI 166


>gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus sp. MC-1]
 gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus sp. MC-1]
          Length = 243

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 19/175 (10%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++  +R+ GR  + +R ++      +   GS L   GDTQ +   T+    +E     + 
Sbjct: 1   MNSSLRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTATV----EESQPRWMR 56

Query: 368 GTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              R      Y  LP +T    G  +  G  S R +   RL  RA+  V+   A    T+
Sbjct: 57  NEDRGWVTAEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA--GV---------PISKPVAGIAMGLV 467
            +  ++ ++DG +  A++ G+ +A+ DA  G+         P+   VA ++ G+V
Sbjct: 117 WLDCDVIQADGGTRTASITGAFVAMHDAVTGLLKAGLIRHNPLRDHVAAVSCGMV 171


>gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010]
 gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 35/209 (16%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R +S      +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASV----EERIPPFLRGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPY 421
                 Y  LP +TG  SRM    +RE   G          RL  R++   +   A    
Sbjct: 57  GWVTAEYGMLPRSTG--SRM----QREAARGKQGGRTMEIQRLIGRSLRAAINLKALGER 110

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
           ++ I  ++ ++DG +  A++ G+ +AL DA             P+   VA +++G + +G
Sbjct: 111 SITIDCDVIQADGGTRTASITGAFVALQDAINHLIKTKKLKKSPLFGQVASVSVG-IYNG 169

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG 499
              +   D+  DED     D  V   D+G
Sbjct: 170 TPVL---DLDYDEDSSAETDMNVVMNDAG 195


>gi|146412582|ref|XP_001482262.1| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN  ++G V I     +E+     +++   D+ E  ++Y+G V +V DFG FV   G
Sbjct: 1180 GKVVNCKEEGRVLITLKE-SEVNGELNVLKKFEDLKE-GEVYEGSVRQVTDFGVFVKLDG 1237

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
              +  GL H S+++  +      +  EGD V VK+L  + ++ ++ L MKV
Sbjct: 1238 TLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEKKQLSLGMKV 1288


>gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110]
 gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++ ++   + + GS +   G+T+ +   ++    +++    L G+ + 
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTASI----EDRVPRFLLGSGQG 60

Query: 373 DFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E  R  +   S R     RL  R++   +        ++ I  ++ 
Sbjct: 61  WLTAEYRMLPSATQERQRRELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A++ G  +AL  A             P+  PVA I++GL+ +G+ F+   D+
Sbjct: 121 QADAGTRTASITGGYVALGLAVNKLIKQGELIQSPLRFPVAAISVGLI-EGEAFL---DL 176

Query: 480 SGDEDHLGHMDFKVAGTDS 498
           +  ED    +DF V  T++
Sbjct: 177 NYPEDSKADIDFNVVMTEN 195


>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
 gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
          Length = 188

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 35/44 (79%), Gaps = 1/44 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            ++I  +P + ++ +G+VV+++DFGAF+ F GA DGL+H+SQ++
Sbjct: 72  FKAIVFMPMMQEVIEGKVVEIVDFGAFISF-GAMDGLLHVSQIT 114


>gi|297618529|ref|YP_003706634.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
 gi|297377506|gb|ADI35661.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
          Length = 189

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 18/93 (19%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTS 661
           +T  PEV+++ +G++V +++FGAF+   G  DGL+HISQ+  + VA           +T 
Sbjct: 75  LTYEPEVHEMIEGEIVDIVEFGAFIR-LGPLDGLIHISQVMDDYVAFDPQREAIIGKETG 133

Query: 662 DVVKEGDTVWVKLLDF---DDR---GKIKLSMK 688
            V+++GD V  +++     +DR    KI L+M+
Sbjct: 134 KVLEKGDKVRARIVAVSLKEDRKRGSKIALTMR 166


>gi|284161171|ref|YP_003399794.1| translation initiation factor 2, subunit alpha [Archaeoglobus
           profundus DSM 5631]
 gi|284011168|gb|ADB57121.1| translation initiation factor 2, alpha subunit [Archaeoglobus
           profundus DSM 5631]
          Length = 273

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   +I  G V +VMDFGAFV       ++G+VHIS+++   +    D VK+G  V  K+
Sbjct: 17  PSPGEIVIGTVTRVMDFGAFVSLDEYENKEGMVHISEVAPGWIKDIRDHVKKGQKVVCKV 76

Query: 675 LDFD-DRGKIKLSMKVVDQ 692
           L  +  RG I LS+K V +
Sbjct: 77  LGVNPKRGHIDLSIKDVTE 95


>gi|159904859|ref|YP_001548521.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           C6]
 gi|159886352|gb|ABX01289.1| DNA-directed RNA polymerase [Methanococcus maripaludis C6]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 18/93 (19%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTS 661
           +T VPE+ ++  G++V V++FGAFV   G  DGL+HISQ+  + V+           +T 
Sbjct: 75  LTYVPELQEVVDGEIVDVVEFGAFVR-LGPLDGLIHISQIMDDFVSFDPKREAIIGKETG 133

Query: 662 DVVKEGDT-----VWVKLLDFDDRG-KIKLSMK 688
            V+++GD      V V L +   RG KI L+M+
Sbjct: 134 KVLEKGDKVRARIVAVSLREEKKRGSKIALTMR 166


>gi|332828138|gb|EGK00854.1| hypothetical protein HMPREF9455_02819 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 707

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           IR+I D+ E   I  G V  + +FG FV      +GLVHIS+++   V+  ++VV     
Sbjct: 628 IRTIDDLRE-GMILPGIVTNITNFGCFVDVGIKENGLVHISEIADRFVSDPTEVVSLHQH 686

Query: 670 VWVKLLDFDD-RGKIKLSMK 688
           V VK+L  D  R +++LSMK
Sbjct: 687 VEVKVLSVDTARKRVQLSMK 706


>gi|296329347|ref|ZP_06871848.1| bifunctional penicillin tolerance protein LytB/ ribosomal protein
           S1 RpsA [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153703|gb|EFG94520.1| bifunctional penicillin tolerance protein LytB/ ribosomal protein
           S1 RpsA [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 827

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           G V KV+ +GAFV      +GLVHIS  S T++    +D VKEG+ + V++ D   +DR 
Sbjct: 567 GIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKEGEKIKVRITDLHPEDR- 625

Query: 682 KIKLSMK 688
           K+KL +K
Sbjct: 626 KLKLGIK 632



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V+DFG  V     + G +HIS++S +R+ K SD  K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKL 542

Query: 686 SMKVVDQN 693
           S+K ++++
Sbjct: 543 SIKKLEED 550


>gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5]
 gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 19/137 (13%)

Query: 378 YNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           Y+ LP AT       S+ G PS R +   RL  R++  ++   A   YT+ I  ++ ++D
Sbjct: 62  YSMLPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQAD 121

Query: 434 GSSSMATVCGSSLALMD-------AGV----PISKPVAGIAMGLVKDGDDFIILSDISGD 482
           G +  A+V G+ +AL D       AG+    P+   VA I++G+  +      L+D+   
Sbjct: 122 GGTRCASVNGAFIALADAVDSMLAAGMIGESPLRSTVAAISVGIFNNWP----LADLDYL 177

Query: 483 EDHLGHMDFKVAGTDSG 499
           ED    +D  V  T  G
Sbjct: 178 EDSQAMVDMNVVATGKG 194


>gi|16804407|ref|NP_465892.1| general stress protein 13 [Listeria monocytogenes EGD-e]
 gi|47094388|ref|ZP_00232080.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47095848|ref|ZP_00233452.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224500611|ref|ZP_03668960.1| general stress protein 13 [Listeria monocytogenes Finland 1988]
 gi|224503741|ref|ZP_03672048.1| general stress protein 13 [Listeria monocytogenes FSL R2-561]
 gi|254826370|ref|ZP_05231371.1| general stress protein [Listeria monocytogenes FSL J1-194]
 gi|254829566|ref|ZP_05234253.1| general stress protein [Listeria monocytogenes FSL N3-165]
 gi|254831207|ref|ZP_05235862.1| general stress protein 13 [Listeria monocytogenes 10403S]
 gi|254854480|ref|ZP_05243828.1| general stress protein [Listeria monocytogenes FSL R2-503]
 gi|254901169|ref|ZP_05261093.1| general stress protein 13 [Listeria monocytogenes J0161]
 gi|254914044|ref|ZP_05264056.1| general stress protein 13 [Listeria monocytogenes J2818]
 gi|254933426|ref|ZP_05266785.1| general stress protein [Listeria monocytogenes HPB2262]
 gi|254938359|ref|ZP_05270056.1| general stress protein [Listeria monocytogenes F6900]
 gi|254992405|ref|ZP_05274595.1| general stress protein 13 [Listeria monocytogenes FSL J2-064]
 gi|255026257|ref|ZP_05298243.1| general stress protein 13 [Listeria monocytogenes FSL J2-003]
 gi|255030044|ref|ZP_05301995.1| general stress protein 13 [Listeria monocytogenes LO28]
 gi|255521504|ref|ZP_05388741.1| general stress protein 13 [Listeria monocytogenes FSL J1-175]
 gi|284802811|ref|YP_003414676.1| general stress protein 13 [Listeria monocytogenes 08-5578]
 gi|284995953|ref|YP_003417721.1| general stress protein 13 [Listeria monocytogenes 08-5923]
 gi|300766249|ref|ZP_07076212.1| hypothetical protein LMHG_11314 [Listeria monocytogenes FSL N1-017]
 gi|16411857|emb|CAD00447.1| lmo2369 [Listeria monocytogenes EGD-e]
 gi|47015725|gb|EAL06654.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47017240|gb|EAL08081.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|258601981|gb|EEW15306.1| general stress protein [Listeria monocytogenes FSL N3-165]
 gi|258607881|gb|EEW20489.1| general stress protein [Listeria monocytogenes FSL R2-503]
 gi|258610972|gb|EEW23580.1| general stress protein [Listeria monocytogenes F6900]
 gi|284058373|gb|ADB69314.1| general stress protein 13 [Listeria monocytogenes 08-5578]
 gi|284061420|gb|ADB72359.1| general stress protein 13 [Listeria monocytogenes 08-5923]
 gi|293584987|gb|EFF97019.1| general stress protein [Listeria monocytogenes HPB2262]
 gi|293592063|gb|EFG00398.1| general stress protein 13 [Listeria monocytogenes J2818]
 gi|293595610|gb|EFG03371.1| general stress protein [Listeria monocytogenes FSL J1-194]
 gi|300513065|gb|EFK40149.1| hypothetical protein LMHG_11314 [Listeria monocytogenes FSL N1-017]
 gi|328465354|gb|EGF36605.1| general stress protein 13 [Listeria monocytogenes 1816]
 gi|328471538|gb|EGF42423.1| general stress protein 13 [Listeria monocytogenes 220]
          Length = 117

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|315283451|ref|ZP_07871637.1| general stress protein 13 [Listeria marthii FSL S4-120]
 gi|313612904|gb|EFR86860.1| general stress protein 13 [Listeria marthii FSL S4-120]
          Length = 117

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|312869800|ref|ZP_07729942.1| Tex-like protein N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311094646|gb|EFQ52948.1| Tex-like protein N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 724

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS+++ +       VV  GD   VW+  +D   R 
Sbjct: 652 QGTVRNVVDFGAFVDIGVKHDGLVHISKMTKKFTRDPRSVVSVGDIVDVWIDSVDL-KRQ 710

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 711 RIQLTM 716


>gi|188532222|ref|YP_001906019.1| ribonuclease PH [Erwinia tasmaniensis Et1/99]
 gi|226736908|sp|B2VF76|RNPH_ERWT9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188027264|emb|CAO95107.1| Ribonuclease PH (tRNA nucleotidyltransferase) [Erwinia tasmaniensis
           Et1/99]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +       +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA I++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVSTGKLKANPMKGMVAAISVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDAAAETDMNVVMTEDG 195


>gi|332880545|ref|ZP_08448219.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681533|gb|EGJ54456.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 597

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++    I+ + E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQKKEIISKL-EKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVQLDQKINVVILDFDDEKKRIALGLK 282



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|300113393|ref|YP_003759968.1| ribonuclease PH [Nitrosococcus watsonii C-113]
 gi|299539330|gb|ADJ27647.1| ribonuclease PH [Nitrosococcus watsonii C-113]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I       Q   GS L   G+T+ I   ++    +++    L GT R
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTQYAEGSVLVEFGNTRVICNASV----EDRIPRFLKGTGR 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    G  +  G    R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL+D           A  PI   +A +++G + +G   +  
Sbjct: 117 DVIQADGGTRTAAITGSYVALVDAIHNRLKKRAIAHSPIHGQIASVSVG-IYEGTPVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   ++G    +Q   +      N +   L+ AK G   +L + 
Sbjct: 174 -DLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQ 232

Query: 536 SKVLSES 542
           ++VL+ +
Sbjct: 233 TEVLARN 239


>gi|259503809|ref|ZP_05746711.1| YhgF like protein [Lactobacillus antri DSM 16041]
 gi|259168188|gb|EEW52683.1| YhgF like protein [Lactobacillus antri DSM 16041]
          Length = 724

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT--VWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS+++ +       VV  GD   VW+  +D   R 
Sbjct: 652 QGTVRNVVDFGAFVDIGVKHDGLVHISKMTKKFTRDPRSVVSVGDIVDVWIDSVDL-KRQ 710

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 711 RIQLTM 716


>gi|290894206|ref|ZP_06557176.1| general stress protein [Listeria monocytogenes FSL J2-071]
 gi|290556269|gb|EFD89813.1| general stress protein [Listeria monocytogenes FSL J2-071]
 gi|313607130|gb|EFR83632.1| general stress protein 13 [Listeria monocytogenes FSL F2-208]
          Length = 117

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R IS   G   +  GS+L   G+T+ +   +L T    ++   L G  R
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASL-TAGVPRW---LKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL D+               PI   +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  T SG
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSG 207


>gi|304399022|ref|ZP_07380891.1| ribonuclease PH [Pantoea sp. aB]
 gi|308188661|ref|YP_003932792.1| ribonuclease PH [Pantoea vagans C9-1]
 gi|304353482|gb|EFM17860.1| ribonuclease PH [Pantoea sp. aB]
 gi|308059171|gb|ADO11343.1| ribonuclease PH [Pantoea vagans C9-1]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 27/199 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   G+T+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSAQQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTASV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G    R +   RL  R++   +   A   +T+ +
Sbjct: 57  GWVTAEYGMLPRSTH--SRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKALGEFTITL 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA             P+   VA I++G+VK G+   
Sbjct: 115 DCDVIQADGGTRTASITGACVALADALNKLVASGKLKANPMKGMVAAISVGIVK-GE--- 170

Query: 475 ILSDISGDEDHLGHMDFKV 493
            L D+   ED     D  V
Sbjct: 171 ALCDLEYVEDSAAETDMNV 189


>gi|89100264|ref|ZP_01173130.1| hypothetical protein B14911_24571 [Bacillus sp. NRRL B-14911]
 gi|89085002|gb|EAR64137.1| hypothetical protein B14911_24571 [Bacillus sp. NRRL B-14911]
          Length = 130

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 6   EVGSVLTGKVTGIQPYGAFVALDENTQGLVHISEITHGYVKDVNEHLKVGDEVNVKVLSV 65

Query: 678 DD-RGKIKLSMK 688
           D+  GKI LS++
Sbjct: 66  DEAAGKIGLSIR 77


>gi|330996791|ref|ZP_08320663.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841]
 gi|329572513|gb|EGG54164.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841]
          Length = 597

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++    I+ + E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQKKEIISKL-EKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVQLDQKINVVILDFDDEKKRIALGLK 282



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|323489951|ref|ZP_08095172.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
 gi|323396247|gb|EGA89072.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 18/198 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R +  +R ++  V  L    GS L   G T+ I   T+    +++    L G  + 
Sbjct: 3   RIDNRQTNELRPVTVDVEYLIHPEGSVLITVGQTKVICTATI----EDKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   +R  A + +  G      RL  RA+  V+        TL I  +
Sbjct: 59  WITAEYSMLPRATNSRNRREASAGKIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           + ++DG +  A++ G+ +A+  A         P++  +A  ++G+  +    +   D++ 
Sbjct: 119 VIQADGGTRTASITGAFIAMTMAIGKLELPDFPVTDFLAATSVGVTAENGPIL---DLNY 175

Query: 482 DEDHLGHMDFKVAGTDSG 499
            ED    +D  +  T +G
Sbjct: 176 VEDSSAEVDMNLVMTGAG 193


>gi|309798588|ref|ZP_07692863.1| S1-type RNA-binding domain protein [Streptococcus infantis SK1302]
 gi|308117824|gb|EFO55225.1| S1-type RNA-binding domain protein [Streptococcus infantis SK1302]
          Length = 113

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G++  +  +GAFV       GL+HIS++ T  +    DV+K G+ V V+++D D+  GK 
Sbjct: 9   GRITGIQSYGAFVELETGITGLIHISEIRTGFIENIYDVLKIGEEVQVQVVDLDEYTGKA 68

Query: 684 KLSMKVVDQN 693
            LS++ +++ 
Sbjct: 69  SLSIRTLEEE 78


>gi|307825282|ref|ZP_07655502.1| ribosomal protein S1 [Methylobacter tundripaludum SV96]
 gi|307733738|gb|EFO04595.1| ribosomal protein S1 [Methylobacter tundripaludum SV96]
          Length = 553

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + D+GAF+   G  DGL+HI+ ++  RV   S+ V+ G  + VK+L +
Sbjct: 190 EEGAVVTGVVKNLTDYGAFIDLGGI-DGLLHITDMAWRRVRHPSECVEIGQEIKVKVLKY 248

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D+ ++ L MK + ++  + I
Sbjct: 249 DKDKNRVSLGMKQMGEDPWQNI 270



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G+V  + D+G FV      +GLVH+S++  T +    S +V+ GD V V +L
Sbjct: 275 PAGTRVF-GKVNNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVNPSKLVQLGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 334 EIDEERRRISLGMKQCKTN 352



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           G++  + DFG F+   G  DGLVH+S +S   E  A   D  K+GD +   +L  D +R 
Sbjct: 369 GKIKSITDFGIFIGLDGGIDGLVHMSDISWADEGEASVRD-FKKGDELETVILAVDSERE 427

Query: 682 KIKLSMKVVDQN 693
           +I L +K ++Q+
Sbjct: 428 RISLGIKQLEQD 439


>gi|256425571|ref|YP_003126224.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040479|gb|ACU64023.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
          Length = 630

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQV++     + DFGAF+   G  DGL++I+ +S  R++  S+V++    + V 
Sbjct: 235 ISKLEKGQVLEGTIKNITDFGAFIDL-GGLDGLLYITDISWGRISHPSEVLQMDQKINVV 293

Query: 674 LLDFDDRGK 682
           +LDFDD  K
Sbjct: 294 VLDFDDEKK 302


>gi|328956882|ref|YP_004374268.1| general stress protein 13 [Carnobacterium sp. 17-4]
 gi|328673206|gb|AEB29252.1| general stress protein 13 [Carnobacterium sp. 17-4]
          Length = 126

 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  + KG++  +  +GAFV       GL+HIS+     V   ++V+  G+ + V +LD 
Sbjct: 4   KIGMVIKGKITGIQPYGAFVSLDDETQGLIHISECKHGFVKDLNEVLTVGNEIEVMVLDI 63

Query: 678 DD-RGKIKLSMKVVDQNT 694
           D+   KI LS++ +++NT
Sbjct: 64  DEYTKKISLSLRTLEENT 81


>gi|124005220|ref|ZP_01690062.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134]
 gi|123989472|gb|EAY29033.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+N  +D  V ++   L E +   +  R + ++ E  ++ +G +  + +FG F+   G  
Sbjct: 178 KINYANDNVV-VSHKVLIEKDLEEQKARILNNL-EKGQVLEGVIKNMTNFGVFIDLGGV- 234

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           DGL+HI+ +S  R++   +V+     V V +LDFDD  K I L MK
Sbjct: 235 DGLLHITDISWGRISHPEEVLNLDQKVNVVVLDFDDEKKRISLGMK 280



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +KG V  +  FG F+      DGLVH+S LS T++V   S+ VK  D + V +L+ D D 
Sbjct: 389 HKGIVRNLTSFGLFIELEEGIDGLVHVSDLSWTKKVKHPSEFVKVNDELEVVVLELDVDN 448

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 449 KRLALGHKQLEEN 461



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG++V V D+GAF+      +GL+H+S++S ++ +    D +K  D +   +L   DR +
Sbjct: 301 KGRIVNVADYGAFLEVIPGVEGLIHVSEMSWSQHLRNPQDFIKVSDELEAVVLTL-DREE 359

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 360 RKMSLGI 366


>gi|223933222|ref|ZP_03625213.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|330832256|ref|YP_004401081.1| RNA binding S1 domain-containing protein [Streptococcus suis ST3]
 gi|223898152|gb|EEF64522.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|329306479|gb|AEB80895.1| RNA binding S1 domain protein [Streptococcus suis ST3]
          Length = 123

 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG V  +  +GAFV       GL+HIS++ T  V    D +K G  V V+++DFD+   K
Sbjct: 8   KGTVTGIQPYGAFVQLENGTTGLIHISEIKTGFVDNIYDHLKLGQEVLVQVVDFDEYTEK 67

Query: 683 IKLSMKVVDQNTGK 696
             LS++ +++   K
Sbjct: 68  ASLSIRTLEEEQQK 81


>gi|32265636|ref|NP_859668.1| 30S ribosomal protein S1 [Helicobacter hepaticus ATCC 51449]
 gi|32261684|gb|AAP76734.1| ribosomal protein S1 [Helicobacter hepaticus ATCC 51449]
          Length = 552

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + KG V K+  FG FV   G  +GLVH ++LS +     +   KEGD V VK+L +
Sbjct: 199 ENDGVQKGIVKKIAPFGVFVDVYGV-EGLVHYTELSHKGPINPAKNFKEGDEVVVKVLGY 257

Query: 678 DDRG-KIKLSMKVVDQNTGKPI 698
           D++  ++ LSMK +  +  K I
Sbjct: 258 DEKKRRLSLSMKALGDDPWKEI 279



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +I KG++  + DFGAFV+  G  DGL+H      ++ +K  D  K GD + VK++  
Sbjct: 371 QVGEIIKGKIATLTDFGAFVNLGGV-DGLLHNEDAYWDKKSKCKDGFKVGDEIEVKIIKI 429

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +  ++ LS K+++ +  +
Sbjct: 430 DKEHERVSLSKKLLEHSPAR 449


>gi|300865634|ref|ZP_07110407.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
 gi|300336361|emb|CBN55557.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
          Length = 369

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|51244751|ref|YP_064635.1| 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
 gi|50875788|emb|CAG35628.1| probable 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
          Length = 570

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 598 SSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  A +E AR  +R  +    E  +I KG +  + D+G F+   G  DGL HI+ LS  R
Sbjct: 175 SRRAILEEARNKLREEMRSKLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGR 233

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+  + + K G+ + VK+L +D +  ++ L +K
Sbjct: 234 VSHPAKLYKVGEELEVKVLKYDKEHDRVSLGVK 266



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           +T+   V  I +G++  + DFG F+      DGL+H+S LS TER+   ++   +G+ + 
Sbjct: 363 VTENYPVGSIIEGKIKNITDFGVFIGIEEGIDGLIHVSDLSWTERIKHPTEKYAKGEMIQ 422

Query: 672 VKLLDFD 678
             +L  D
Sbjct: 423 AVVLKID 429



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD--D 679
           + +G++  V DFG FV      +GLVH+S++S +++     + + GDT+   +++    D
Sbjct: 459 VVEGEITNVTDFGVFVKLEEGIEGLVHVSEISKDKIKTPVGMYQVGDTLKAIVINVSAKD 518

Query: 680 RGKIKLSMKVV 690
           R KI LS+K +
Sbjct: 519 R-KIGLSVKTL 528



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVVKEGDTV 670
           ++ D   V++   G+VV + D+G FV      +GL+H+S+++  +  +  S +V  GD +
Sbjct: 275 TVVDRYPVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSKMVAVGDEI 334

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQN 693
            V +L+ +   K I L MK +  N
Sbjct: 335 EVMVLNIETETKRISLGMKQLQPN 358


>gi|322418585|ref|YP_004197808.1| ribonuclease PH [Geobacter sp. M18]
 gi|320124972|gb|ADW12532.1| ribonuclease PH [Geobacter sp. M18]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 23/202 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R +GR ++ +R++      L+   GS L   GDT+ I   T+ T+        L G   
Sbjct: 2   TRTNGRAADALREVKITRNYLKHAEGSVLIEFGDTKVICNATVETK----VPSFLKGKGT 57

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  S R     RL  R++  V+        ++ I  
Sbjct: 58  GWVTAEYCMLPRATHTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+ + VA +++G+V DG  F+  
Sbjct: 118 DVIQADGGTRTASITGAYVALADALQSLVDNGELTRSPLREAVAAVSVGIV-DGVPFL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDS 498
            D+   ED    +D     T S
Sbjct: 175 -DLDYPEDSSAEVDMNFVMTSS 195


>gi|152992146|ref|YP_001357867.1| 30S ribosomal protein S1 [Sulfurovum sp. NBC37-1]
 gi|151424007|dbj|BAF71510.1| 30S ribosomal protein S1 [Sulfurovum sp. NBC37-1]
          Length = 552

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG V  + DFGAFV   G+ +GL+H  ++S ++       +  GD V VK++  D
Sbjct: 367 VGDVVKGTVTSITDFGAFVK-VGSVEGLLHNQEISWDKSKNAKSELAVGDEVEVKIIKID 425

Query: 679 -DRGKIKLSMKVVD 691
            D GKI LS K ++
Sbjct: 426 KDAGKISLSKKALE 439



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G+V ++   L E + A+     + ++ E  +   G + K+  +G FV   G  DGLVH
Sbjct: 166 DKGSVVVSRKELIERDKAK-TDEIVGELLENKEPVVGTIKKITSYGMFVD-VGGMDGLVH 223

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            SQ+S +     S   +EGD V V  LD+D + K  LS+ + D N
Sbjct: 224 YSQISHKGPVNPSKYFQEGDEVNVIALDYDKK-KRHLSLSIKDAN 267


>gi|319942267|ref|ZP_08016582.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
 gi|319804140|gb|EFW01040.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
          Length = 277

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 36/229 (15%)

Query: 297 DIQAKVVRTVMLDKKV---------RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           D Q      +ML+K +         R DGR  + +R +       +   GS L   GDT 
Sbjct: 10  DAQISASNALMLEKMMTTPKEAFVPRPDGRAVDALRPVEITRRFTKYAEGSVLMCAGDTH 69

Query: 348 AIVV--VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG--- 402
            +    VT+G        + L G         Y  LP +TG  +   A   ++ G     
Sbjct: 70  VLCTASVTVGV------PNFLRGKGEGWVTAEYGLLPRSTGTRTDREAARGKQTGRTQEI 123

Query: 403 -RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------GV- 453
            RL  R++  V+ +     +T++I  ++ ++DG +  A++ G+ +AL DA       G+ 
Sbjct: 124 QRLIGRSLRAVVDRKKLGEHTIQIDCDVLQADGGTRCASITGAWIALRDAVDWMLAKGMI 183

Query: 454 ---PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
              PI   V+ +++G+   G+  +   D++  ED     D  V  T +G
Sbjct: 184 SEDPILAQVSAVSVGMWS-GEPVL---DLNYAEDSASDTDMNVVMTSAG 228


>gi|152972490|ref|YP_001337636.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206579777|ref|YP_002235994.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238897086|ref|YP_002921832.1| ribonuclease PH [Klebsiella pneumoniae NTUH-K2044]
 gi|290511794|ref|ZP_06551162.1| ribonuclease PH [Klebsiella sp. 1_1_55]
 gi|166228287|sp|A6TFN5|RNPH_KLEP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736914|sp|B5XTF9|RNPH_KLEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150957339|gb|ABR79369.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206568835|gb|ACI10611.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238549414|dbj|BAH65765.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|289775584|gb|EFD83584.1| ribonuclease PH [Klebsiella sp. 1_1_55]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIV-NGEAICDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
             I   ED     D  V  T+ G
Sbjct: 176 EYI---EDSAAETDMNVVMTEDG 195


>gi|303237351|ref|ZP_07323921.1| 30S ribosomal protein S1 [Prevotella disiens FB035-09AN]
 gi|302482738|gb|EFL45763.1| 30S ribosomal protein S1 [Prevotella disiens FB035-09AN]
          Length = 591

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G FV   G  DGL+HI+ LS  R+   
Sbjct: 197 AELEAQRKEIISHL---EKGQILEGVVKNITSYGVFVDLGGV-DGLIHITDLSWGRINDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV+    + V +LDFD+  K I L +K
Sbjct: 253 HEVVELDQKINVVILDFDEEKKRIALGLK 281



 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 302 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKAGDEVEAVVLTLDRDER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLREDPWEAI 378


>gi|282865124|ref|ZP_06274177.1| ribonuclease PH [Streptomyces sp. ACTE]
 gi|282560047|gb|EFB65596.1| ribonuclease PH [Streptomyces sp. ACTE]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T       S  G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+  +ED     D  V  T  G
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDG 198


>gi|23099790|ref|NP_693256.1| general stress protein 13 [Oceanobacillus iheyensis HTE831]
 gi|22778020|dbj|BAC14291.1| polyribonucleotide nucleotidyltransferase (general stress protein
           13) [Oceanobacillus iheyensis HTE831]
          Length = 122

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +T+  E  +I +G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MTNKLEAGQIIEGKVTGIQPYGAFVSVDEETQGLVHISEITHGYVKDINEHLSVGDEVKV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQ 692
           K+++ D +R K+ LS++  ++
Sbjct: 61  KVINVDEERNKVSLSIRATEE 81


>gi|269123857|ref|YP_003306434.1| RNA binding S1 domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315183|gb|ACZ01557.1| RNA binding S1 domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 762

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE I SI D+ +V    +G V  V  FGAFV      D ++HIS+LS   +   + V+  
Sbjct: 641 REDILSIEDL-KVGMELEGTVRNVTKFGAFVDIGLKNDAMIHISELSNSFIDDPTKVLSI 699

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  + V++LD D  RG++ L+ K
Sbjct: 700 GQIIKVRVLDIDIQRGRVGLTRK 722


>gi|212712586|ref|ZP_03320714.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
 gi|212684802|gb|EEB44330.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++  A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLV-KDGDDFII 475
           ++ ++DG +  A++ G+ +AL+D           A  P+   VA +++G+V ++G     
Sbjct: 117 DVIQADGGTRTASISGACVALVDALNNMVAQGKLAKSPLKSMVAAVSVGIVGQEG----- 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+   ED     D  V   + G
Sbjct: 172 LCDLEYVEDSAAETDMNVVMMEDG 195


>gi|241663552|ref|YP_002981912.1| ribonuclease PH [Ralstonia pickettii 12D]
 gi|240865579|gb|ACS63240.1| ribonuclease PH [Ralstonia pickettii 12D]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDTQ +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRNFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  RA+  V    A   +TL +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  DA           G PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAYDAVSVMREKGQLVGNPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 173 LDLDYPEDSACDTDMNVVMTGSG 195


>gi|217963527|ref|YP_002349205.1| General stress protein 13 (GSP13) [Listeria monocytogenes HCC23]
 gi|217332797|gb|ACK38591.1| General stress protein 13 (GSP13) [Listeria monocytogenes HCC23]
 gi|307571897|emb|CAR85076.1| S1 RNA binding domain protein [Listeria monocytogenes L99]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|18026317|gb|AAL55473.1|AF016851_1 hemin-binding protein [Prevotella intermedia]
          Length = 591

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA R+ I S     E  +I +G V  +  +G FV   G  DGL+HI+ LS  R+   
Sbjct: 197 AELEAQRKEIISHL---EKGQILEGVVKNITSYGVFVDLGGV-DGLIHITDLSWGRINDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV+    + V +LDFD+  K I L +K
Sbjct: 253 HEVVELDQKINVVILDFDEEKKRIALGLK 281



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 302 KGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKAGDEVEAVVLTLDRDER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWEAI 378


>gi|227538325|ref|ZP_03968374.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33300]
 gi|300774228|ref|ZP_07084095.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241840|gb|EEI91855.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33300]
 gi|300758907|gb|EFK55736.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33861]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V K+ KGQV++     + DFG F+   G  DGL+HI+ +S  R+    +V+    T+ V 
Sbjct: 252 VAKLEKGQVLEGTVKNITDFGVFIDLGGV-DGLLHITDISWGRIEHPKEVLALDQTINVV 310

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFDD  K I L +K
Sbjct: 311 VLDFDDEKKRIALGLK 326



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG++V V D+GAF+      +GL+H+S++S ++ +    + +K GD +  ++L   DR +
Sbjct: 347 KGKIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEILTL-DREE 405

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 406 RKMSLGI 412



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 627 VVKVM-DFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           VVK M +FG FV      DGL+HIS LS ++++   ++  K G+T+ V +L+ D+   K+
Sbjct: 436 VVKNMTNFGVFVELEEGIDGLIHISDLSWSKKINHPNEFTKVGETLDVVVLELDEENRKL 495

Query: 684 KLSMKVVDQN 693
            L  K +++N
Sbjct: 496 SLGHKQLEEN 505


>gi|229004370|ref|ZP_04162139.1| 30S ribosomal protein S1 [Bacillus mycoides Rock1-4]
 gi|228756881|gb|EEM06157.1| 30S ribosomal protein S1 [Bacillus mycoides Rock1-4]
          Length = 152

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V +++ FGAFV      +GLVH+SQ++   V   ++V++ G  V VK+L+     
Sbjct: 46  IREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAE 105

Query: 682 K-IKLSMK-VVDQNT 694
           K I LS+K  V++N 
Sbjct: 106 KRISLSIKEAVEENN 120


>gi|197117592|ref|YP_002138019.1| ribonuclease PH [Geobacter bemidjiensis Bem]
 gi|197086952|gb|ACH38223.1| ribonuclease PH [Geobacter bemidjiensis Bem]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 35/208 (16%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R++      L+   GS L   GDT+ I   T+  R        L G   
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEAR----VPSFLKGKGS 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--IHPVLPQTAQFPYTLRIVSE- 428
                 Y  LP AT         ++RE   G+L+ R   I  ++ ++ +    L ++ E 
Sbjct: 58  GWVTAEYCMLPRAT------HTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGER 111

Query: 429 -------ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
                  + ++DG +  A++ G+ +AL DA             P+ + VA +++G+V DG
Sbjct: 112 SIVIDCDVIQADGGTRTASITGAYVALADALQNLVNAGELEKSPLREAVAAVSVGIV-DG 170

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDS 498
             F+   D+   ED    +D     T S
Sbjct: 171 VPFL---DLDYPEDSTAEVDMNFVMTSS 195


>gi|163942228|ref|YP_001647112.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|229013696|ref|ZP_04170825.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
 gi|229135326|ref|ZP_04264120.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|229169222|ref|ZP_04296936.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|226736888|sp|A9VIV4|RNPH_BACWK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163864425|gb|ABY45484.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|228614288|gb|EEK71399.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|228648149|gb|EEL04190.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|228747618|gb|EEL97492.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +A++ A
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLA 140


>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 37/188 (19%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +  +R    ++  L    GS+    G+T    VV             L G +RN
Sbjct: 10  RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVV----------FGPLEGRRRN 59

Query: 373 ----DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA------RRAIHPVLPQTAQFPYT 422
               + M+ Y+    AT          RRE  H R         + ++  +  T   P T
Sbjct: 60  REGAELMVSYSQATFAT--------RKRREQMHDRTMIETAELLKQMYEQIIITKLLPET 111

Query: 423 ---LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              LR+  ++ + DGS + A +   +LAL+DAG+P+   VA    G + DG    ++ D+
Sbjct: 112 MIDLRV--QVMQDDGSVTAAVINACTLALIDAGIPMIDIVAAAEGGYI-DGK---MVVDM 165

Query: 480 SGDEDHLG 487
           + DE+++G
Sbjct: 166 NKDEENVG 173


>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
 gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I AQ+       GSS   +G+T+ +V VT G  E  Q        ++
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVT-GPHEGRQSGQRGGADKQ 71

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIVS-EI 429
               +  NF   +  E  +  +  R  E+ H    R A   VL     +P+++  ++  I
Sbjct: 72  AKVEVEINFAGFSGVERRKRKSDKRTSEMEH--CIRSAFEGVL-LLHLYPHSIITLNIHI 128

Query: 430 TESDGSSSMATVCGSSLALMDAGVPIS 456
              DGS   A +  S+LAL+DAG+P++
Sbjct: 129 VSQDGSLLAACINASTLALIDAGIPMT 155


>gi|288933001|ref|YP_003437060.1| ribonuclease PH [Klebsiella variicola At-22]
 gi|288887730|gb|ADC56048.1| ribonuclease PH [Klebsiella variicola At-22]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLAAAGKLKTNPMKGMVAAVSVGIV-NGEAICDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
             I   ED     D  V  T+ G
Sbjct: 176 EYI---EDSAAETDMNVVMTEDG 195


>gi|309792378|ref|ZP_07686846.1| ribonuclease PH [Oscillochloris trichoides DG6]
 gi|308225599|gb|EFO79359.1| ribonuclease PH [Oscillochloris trichoides DG6]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 21/200 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR    +R I   V       GS+L   G+T+ +   +L    + Q    L G QR 
Sbjct: 7   RQSGRLPTELRSIEILVNAAPYAEGSALISCGNTRVLCAASL----EPQVPGWLRGQQRG 62

Query: 373 DFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y+ LP +T   +R     PS R     RL  R++   +   A     + +  ++ 
Sbjct: 63  WVTAEYSLLPRSTHTRTRRERSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVL 122

Query: 431 ESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A + G  +AL           + A  PI   VA I++G+V+      +L D+
Sbjct: 123 QADGGTRTAAITGGYVALALALRKLHAEGLIATNPIRYAVAAISVGVVEGQ----MLLDL 178

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
              ED    +D  +  T SG
Sbjct: 179 DYAEDSSADLDCNIVQTASG 198


>gi|297835412|ref|XP_002885588.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331428|gb|EFH61847.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 6/81 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V  ++ G+V  V D+GAF+H           GLVH+S++S + V    DV+++GD V V 
Sbjct: 195 VGDVFTGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVI 254

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           + + D ++ +I LS+K ++ +
Sbjct: 255 VTNIDKEKSRITLSIKQLEDD 275


>gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G+D  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLIENGKLKKNPMKGHVAAVSVGIL--GED--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDG 195


>gi|242032271|ref|XP_002463530.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
 gi|241917384|gb|EER90528.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
          Length = 366

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGD V V
Sbjct: 170 KIGDIYDGIVGSVFPYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVQDFLNEGDAVKV 229

Query: 673 KLLDFDD-RGKIKLSMKVVDQN 693
            +++ D  + +I LS++ ++++
Sbjct: 230 IVVNIDTAKSRIALSIRQLEED 251


>gi|209965768|ref|YP_002298683.1| 30S ribosomal protein S1 [Rhodospirillum centenum SW]
 gi|209959234|gb|ACI99870.1| ribosomal protein S1 [Rhodospirillum centenum SW]
          Length = 576

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E +R   RS  + ++ E  ++ +G V  + D+GAFV   G  DGL+H++ +
Sbjct: 182 IVVSRRAVLEESRAEARSELVANLKE-GQVLQGVVKNITDYGAFVDLGGV-DGLLHVTDI 239

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  R+   S+ ++ G TV V+++ F+ +  +I L MK
Sbjct: 240 AWRRINHPSEALQIGQTVTVQVIRFNPETQRISLGMK 276



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V   +KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD 
Sbjct: 292 VQAKFKGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDV 351

Query: 678 DD-RGKIKLSMKVVDQNTGKPIV 699
           D  + +I L +K   QN  +  V
Sbjct: 352 DPVKRRISLGLKQTMQNPWESFV 374


>gi|253701667|ref|YP_003022856.1| ribonuclease PH [Geobacter sp. M21]
 gi|251776517|gb|ACT19098.1| ribonuclease PH [Geobacter sp. M21]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 35/208 (16%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R++      L+   GS L   GDT+ I   T+  R        L G   
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEAR----VPSFLKGKGS 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--IHPVLPQTAQFPYTLRIVSE- 428
                 Y  LP AT         ++RE   G+L+ R   I  ++ ++ +    L ++ E 
Sbjct: 58  GWVTAEYCMLPRAT------HTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGER 111

Query: 429 -------ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
                  + ++DG +  A++ G+ +AL DA             P+ + VA +++G+V DG
Sbjct: 112 SIVIDCDVIQADGGTRTASITGAYVALADALQNLVKAGDLEKSPLREAVAAVSVGIV-DG 170

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDS 498
             F+   D+   ED    +D     T S
Sbjct: 171 VPFL---DLDYPEDSTAEVDMNFVMTSS 195


>gi|194289073|ref|YP_002004980.1| ribonuclease ph [Cupriavidus taiwanensis LMG 19424]
 gi|226736900|sp|B3R3N0|RNPH_CUPTR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|193222908|emb|CAQ68913.1| RNase PH [Cupriavidus taiwanensis LMG 19424]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++  +          G+  
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   A   ++ G      RL  RA+  V    A   YTL +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAVATMLRDGLIAASPIRDHVAAVSVGMV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 173 LDLDYAEDSNCDTDMNVVMTGSG 195


>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
          Length = 274

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 3/158 (1%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G  + +  +   S    
Sbjct: 13  LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAV-YGPHQPKSNISRNSTKAF 71

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
            +           +GE  R      +        R A+  ++     +P + + I  E+ 
Sbjct: 72  VNCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAII-HLELYPRSQIDIFVEVL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + DGS   A+V  S+LAL+DAG+PI     G  + L+ 
Sbjct: 131 QVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLIN 168


>gi|255022764|ref|ZP_05294750.1| general stress protein 13 [Listeria monocytogenes FSL J1-208]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|262374498|ref|ZP_06067772.1| ribonuclease PH [Acinetobacter junii SH205]
 gi|262310494|gb|EEY91584.1| ribonuclease PH [Acinetobacter junii SH205]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+DA             P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLSNKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|253575653|ref|ZP_04852989.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844991|gb|EES73003.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 252

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR ++  R ++  V + +   GS     GDT+ +   T+    +E+    + G  +
Sbjct: 1   MRSNGRQADERRAMNLTVNVNKYAEGSVYIEVGDTKVMCTATV----EEKVPMFMKGQGK 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSMLPRATQTRNQRESARGKLSGRTMEIQRLIARALRSVVDLQALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL  A             PI+  +A +++G+V  G+D ++ 
Sbjct: 117 DVLQADGGTRTTSITGAFVALALAMHKIAQKHALPKFPITDFLASVSVGIV--GEDTLL- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  V  T +G
Sbjct: 174 -DLNYEEDSKAKVDMNVVMTGNG 195


>gi|149278739|ref|ZP_01884874.1| 30S ribosomal protein S1 [Pedobacter sp. BAL39]
 gi|149230358|gb|EDM35742.1| 30S ribosomal protein S1 [Pedobacter sp. BAL39]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V+K+ KGQV++     + DFG F+   G  DGL+HI+ +S  R+    +V+   + + V 
Sbjct: 250 VSKLEKGQVLEGTVKNITDFGVFIDLGGV-DGLLHITDISWGRIEHPKEVLSLDEKINVV 308

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFDD  K I L +K
Sbjct: 309 VLDFDDEKKRIALGLK 324



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG++V V D+GAF+      +GL+H+S++S ++ +    + +K  D +  ++L  D D  
Sbjct: 345 KGKIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVSDEIEAEVLTLDRDER 404

Query: 682 KIKLSMKVVDQN 693
           K+ L +K + Q+
Sbjct: 405 KMSLGIKQLTQD 416



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 627 VVKVM-DFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           VVK M +FG FV      DGL+HIS LS +++V   ++  K GDT+ V +L+ D +  K+
Sbjct: 434 VVKNMTNFGVFVEIEEGIDGLIHISDLSWSKKVNHPNEFTKVGDTLDVVVLELDVESRKL 493

Query: 684 KLSMKVVDQN 693
            L  K +++N
Sbjct: 494 SLGHKQLEEN 503


>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
 gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
          Length = 251

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 1/145 (0%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I AQ+       GSS    G+T+ +V VT G  E +Q         +
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVT-GPAEGKQAGQRGGNGGQ 71

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
               +  NF   +  E  R G   +R        R A   VL        T+ +   I  
Sbjct: 72  AKVEVEINFAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIIS 131

Query: 432 SDGSSSMATVCGSSLALMDAGVPIS 456
            DGS   A +  S+LAL+DAG+P++
Sbjct: 132 QDGSLLAACINASTLALIDAGIPMT 156


>gi|157164057|ref|YP_001466439.1| 30S ribosomal protein S1 [Campylobacter concisus 13826]
 gi|112801623|gb|EAT98967.1| 30S ribosomal protein S1 [Campylobacter concisus 13826]
          Length = 558

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +++ + E + + +G V K+  +G FV   G  DGLVH S++S +     S + KEGD V 
Sbjct: 195 ALSSIVENDSVIEGTVKKITTYGMFVDVGGV-DGLVHYSEISYKGPVNPSSLYKEGDKVL 253

Query: 672 VKLLDFDDRGK-IKLSMK 688
           VK++ +D+  + + LS+K
Sbjct: 254 VKVISYDNEKRHLSLSIK 271



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + KG V  + +FGAFV   G  +GL+H    S +R  K  D+ K GD + VK++  D   
Sbjct: 378 VVKGVVTTITNFGAFVR-VGCVEGLLHNEDASWDRNDKCKDMFKAGDELEVKIIKIDSAE 436

Query: 681 GKIKLSMKVVDQ 692
            KI LS+K + Q
Sbjct: 437 QKISLSLKDLKQ 448


>gi|312795401|ref|YP_004028323.1| ribonuclease PH [Burkholderia rhizoxinica HKI 454]
 gi|312167176|emb|CBW74179.1| Ribonuclease PH (EC 2.7.7.56) [Burkholderia rhizoxinica HKI 454]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 19/169 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +RD+       +   GS L   GDT+ I   ++     E+  + L    R 
Sbjct: 7   RPSGRAADALRDVCITRHYTKHAEGSVLIECGDTKVICTASV----LEKVPEFLRDRGRG 62

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V       P TL I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGL 466
           + ++DG +  A++ G+ +A  DA             PI   VA +++G+
Sbjct: 123 VIQADGGTRCASITGAFIAAHDAVDTLLAHGKLTATPILDHVAAVSVGI 171


>gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f]
 gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f]
          Length = 256

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 24/201 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +RDI+   G  +   GS+L   G T+ +   ++     E       G+  
Sbjct: 2   IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASV----TEGVPRWRKGSGL 57

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y+ LP AT   +       R+G  +  EI   RL  R++   +   A    T+ 
Sbjct: 58  GWVTAEYSMLPRATHTRNDRESVRGRIGGRT-HEI--SRLIGRSLRAAIDLKALGENTIA 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKP------VAGIAMGLVKDGDDFIILSD 478
           I  ++  +DG +  A + G+ +AL DA   + +P      V  +++G+VK     + + D
Sbjct: 115 IDCDVLLADGGTRTAAITGAYVALADACRWLGRPSAIVTSVCAVSVGIVKG----VPMLD 170

Query: 479 ISGDEDHLGHMDFKVAGTDSG 499
           ++  ED     D  V  T +G
Sbjct: 171 LAYTEDSTADTDMNVVCTGTG 191


>gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATV----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G D  +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFDKLVADGKLKKNPMKGHVAAVSVGIL--GQD--VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEG 195


>gi|73663129|ref|YP_301910.1| S1 RNA-binding domain-containing protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495644|dbj|BAE18965.1| putative S1 RNA binding domain protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 126

 Score = 45.8 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K++  
Sbjct: 6   KVGQHVKVRVTGIQPYGAFVETPDNAEGLIHISEIMDDYVHNLKKFLSEGQIVRAKVISI 65

Query: 678 DDRGKIKLSMK 688
           DD GK+ LS+K
Sbjct: 66  DDEGKLNLSLK 76


>gi|319954394|ref|YP_004165661.1| ssu ribosomal protein s1p [Cellulophaga algicola DSM 14237]
 gi|319423054|gb|ADV50163.1| SSU ribosomal protein S1P [Cellulophaga algicola DSM 14237]
          Length = 606

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGLVHI+ LS
Sbjct: 208 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLVHITDLS 266

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             R+   ++VV+    + V +LDFDD + +I+L +K ++++
Sbjct: 267 WSRINHPNEVVELDQKLNVVILDFDDNKSRIQLGLKQLEKH 307



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDT 669
            +++D  ++    KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD 
Sbjct: 310 EALSDEIKIGDKVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVKVGDE 369

Query: 670 VWVKLL--DFDDRGKIKLSMK 688
           V   +L  D DDR K+ L +K
Sbjct: 370 VEAVVLTMDRDDR-KMSLGIK 389



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G V    +FG FV      DGL++IS LS T+++   S+ V  GD + V++L+ D  G
Sbjct: 409 HTGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFVTVGDKLEVEVLELDVEG 468

Query: 682 KIKLSM 687
           + KLS+
Sbjct: 469 R-KLSL 473


>gi|294783859|ref|ZP_06749181.1| S1 RNA binding domain protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479671|gb|EFG27450.1| S1 RNA binding domain protein [Fusobacterium sp. 1_1_41FAA]
          Length = 722

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFVDIGLKNDALLHISEISNKYIDDPSKVLAVGQIIKVRIKDVDKDRGR 713

Query: 683 IKLSMKVVDQN 693
           + L+ K  +QN
Sbjct: 714 VGLTKK--EQN 722


>gi|229019707|ref|ZP_04176514.1| Ribonuclease PH [Bacillus cereus AH1273]
 gi|229027352|ref|ZP_04183607.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228733960|gb|EEL84699.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228741614|gb|EEL91807.1| Ribonuclease PH [Bacillus cereus AH1273]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRGQAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +A++ A
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLA 140


>gi|312864918|ref|ZP_07725148.1| S1 RNA binding domain protein [Streptococcus downei F0415]
 gi|311099538|gb|EFQ57752.1| S1 RNA binding domain protein [Streptococcus downei F0415]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ + YKG +  V  +GAFV       GL+HIS++ T  +    D +K    V V++LD+
Sbjct: 2   KIGEKYKGVITGVKPYGAFVALENGTTGLIHISEIKTGYIENIFDTLKLDQEVLVQVLDY 61

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   K  LSM+ +++
Sbjct: 62  DEFSQKASLSMRTLEE 77


>gi|89093846|ref|ZP_01166792.1| Ribonuclease PH [Oceanospirillum sp. MED92]
 gi|89081976|gb|EAR61202.1| Ribonuclease PH [Oceanospirillum sp. MED92]
          Length = 256

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSG 368
           KK R  GRD++ +R++       +   GS L   G+T+ +   T+     E+ V   L G
Sbjct: 15  KKHRPSGRDNDQMREVKITRNFTKHAEGSVLVEFGETKVLCTATV-----ERGVPRFLRG 69

Query: 369 TQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +      Y  LP +T       +  G    R +   RL  R++   L        T+ 
Sbjct: 70  SGQGWVTAEYGMLPRSTTTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTIT 129

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGD 471
           +  ++ ++DG +  A++ G+ +AL DA             G PI + +A +++G+  +G+
Sbjct: 130 LDCDVLQADGGTRTASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIF-EGE 188

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
             +   D+   ED     D  V  T  G
Sbjct: 189 AVL---DLDYAEDSKAETDMNVIMTSKG 213


>gi|313890022|ref|ZP_07823658.1| S1 RNA binding domain protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121613|gb|EFR44716.1| S1 RNA binding domain protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
           + G +  +  +GAFV       GL+HIS++ T  +    D++  GD V V+++D+D+   
Sbjct: 7   FHGTITGIKPYGAFVALDNGTTGLIHISEIKTGYIDNIHDILAVGDRVDVQVVDYDEFNQ 66

Query: 682 KIKLSMKVVDQ 692
           K+ LS++ +++
Sbjct: 67  KVSLSIRTLEE 77


>gi|255531084|ref|YP_003091456.1| RNA binding S1 domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255344068|gb|ACU03394.1| RNA binding S1 domain protein [Pedobacter heparinus DSM 2366]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V+K+ KGQV++     + DFG F+   G  DGL+HI+ +S  R+    +V+   + + V 
Sbjct: 250 VSKLEKGQVLEGTVKNITDFGVFIDLGGV-DGLLHITDISWGRIEHPKEVLSLDEKINVV 308

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFDD  K I L +K
Sbjct: 309 VLDFDDEKKRIALGLK 324



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 627 VVKVM-DFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           VVK M +FG FV      DGL+HIS LS +++V   ++  K GDT+ V +L+ D D  K+
Sbjct: 434 VVKNMTNFGVFVEIEEGIDGLIHISDLSWSKKVNHPNEFTKVGDTLAVVVLELDVDNRKL 493

Query: 684 KLSMKVVDQN 693
            L  K +++N
Sbjct: 494 SLGHKQLEEN 503



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG++V V D+GAF+      +GL+H+S++S ++ +    + +K GD +  ++L  D  DR
Sbjct: 345 KGKIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEVLTLDREDR 404

Query: 681 GKIKLSMKVVDQN 693
            K+ L +K + Q+
Sbjct: 405 -KMSLGIKQLTQD 416


>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
          Length = 272

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G R+        S    
Sbjct: 12  LRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAV-YGPRQSRSSASRNSTKAI 70

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
            +           +GE  R      +        R A+  ++     +P + + +  E+ 
Sbjct: 71  INCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAII-HLELYPRSQIDVFVEVL 129

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + DGS   A+V  ++LAL+DAG+PI     G ++ LV 
Sbjct: 130 QVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVN 167


>gi|310658769|ref|YP_003936490.1| 30S ribosomal protein s1 [Clostridium sticklandii DSM 519]
 gi|308825547|emb|CBH21585.1| 30S ribosomal protein S1 [Clostridium sticklandii]
          Length = 358

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I  G+V  + ++GAF++     DG VHIS LS++ +   ++++K G  V VK++  
Sbjct: 272 KVGDIVTGEVKNIKEYGAFINLHPTVDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISI 331

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           + +  KI+LS+ + D+   +
Sbjct: 332 EQENKKIELSLILEDKEVAE 351



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++++G +  + D+G FV   G   GLVHIS++S +R  K  +  K G+ + V+++ FD  
Sbjct: 190 EVFEGVIKDIKDYGIFVD-IGGFTGLVHISEISWDRSEKIKEQYKIGEKINVQVISFDQA 248

Query: 681 G-KIKLSMK 688
             ++ LS+K
Sbjct: 249 SERLSLSIK 257


>gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
 gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
          Length = 235

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 30/175 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++ + G+ +   GS L   GDT  +   +L    D +    L  +  
Sbjct: 1   MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASL----DARVPPFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG---------RLARRAIHPVLPQTAQFPYT 422
                 Y  LP AT   SRM    +RE   G         RL  RA+   + + A     
Sbjct: 57  GWVTAEYGMLPRATH--SRM----KREAKDGQSGRTQEIQRLVGRALRAGVDRVALGERQ 110

Query: 423 LRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
           + I  ++ ++DG +  A + G  +A       L+ AGV    P+S PV+ I+ G+
Sbjct: 111 ITIDCDVIQADGGTRCAAITGGWVALRLAVNKLLKAGVIISDPLSAPVSAISCGI 165


>gi|88602981|ref|YP_503159.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1]
 gi|88188443|gb|ABD41440.1| phosphoesterase, RecJ-like protein [Methanospirillum hungatei JF-1]
          Length = 612

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SITD+  + K Y G +    +FGAFV+   +  GL+H S +            +EGDTV 
Sbjct: 17  SITDIV-IGKTYTGTIQGFANFGAFVYLNSSIKGLIHKSNMLMSH--------REGDTVI 67

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           V++ +  D G I L   V+     +P+V
Sbjct: 68  VRVGNIRDNGNIDLEEIVISSYQIQPVV 95


>gi|255322491|ref|ZP_05363636.1| S1 RNA binding domain protein [Campylobacter showae RM3277]
 gi|255300399|gb|EET79671.1| S1 RNA binding domain protein [Campylobacter showae RM3277]
          Length = 556

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V +FGAFV   GA +GL+H    S +R  K  D+ K GD V VK++  D + 
Sbjct: 377 VTKGVVTSVTNFGAFVR-IGAVEGLLHNEDASWDRNDKCKDLFKVGDEVEVKIIKIDSNE 435

Query: 681 GKIKLSMKVVDQ 692
            KI LS K + Q
Sbjct: 436 QKISLSQKDLKQ 447



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I+ V E   + +G V K+  +G FV   G  DGLVH S++S +       + KEGD V V
Sbjct: 196 ISAVAENTDVIEGVVKKITTYGMFVD-VGGVDGLVHYSEISYKGPVNPGSIYKEGDKVLV 254

Query: 673 KLLDFDDRGK-IKLSMK 688
           K++ +D+  K + LS+K
Sbjct: 255 KVIKYDNEKKHLSLSIK 271


>gi|184154721|ref|YP_001843061.1| hypothetical protein LAF_0245 [Lactobacillus fermentum IFO 3956]
 gi|183226065|dbj|BAG26581.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 725

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ +       ++  GD  TVWV  +D   R 
Sbjct: 652 EGTVRNVVDFGAFVDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVTVWVHAVD-KQRD 710

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 711 RIQLTM 716


>gi|298208633|ref|YP_003716812.1| 30S ribosomal protein S1 [Croceibacter atlanticus HTCC2559]
 gi|83848556|gb|EAP86425.1| 30S ribosomal protein S1 [Croceibacter atlanticus HTCC2559]
          Length = 619

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 223 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGTVKNITSYGVFVDLGGV-DGLVHITDLS 281

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   +++V+    + V +LDFD D+ +I+L +K
Sbjct: 282 WSRINHPNEIVELDQKLNVVILDFDEDKTRIQLGLK 317



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDT 669
            ++ D  +V    KG+VV + D+GAF+      +GL+H+S++S +  +    D V  GD 
Sbjct: 325 EALGDELKVGDTVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVNVGDE 384

Query: 670 VWVKLL--DFDDRGKIKLSMKVVDQN 693
           V  ++L  D +DR K+ L MK + Q+
Sbjct: 385 VEAQILTMDKEDR-KMSLGMKQLSQD 409



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL   + +++    IT    V   ++G V    +FG FV      DGL++IS LS T+++
Sbjct: 400 SLGMKQLSQDPWTDITSKYPVGSRHEGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKI 459

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693
              S+    GD + V +L+ D  G K+ L  K ++ N
Sbjct: 460 KHPSEFCNVGDKLEVVVLELDVEGRKLSLGHKQIEDN 496


>gi|242373122|ref|ZP_04818696.1| RNA binding protein [Staphylococcus epidermidis M23864:W1]
 gi|242349276|gb|EES40877.1| RNA binding protein [Staphylococcus epidermidis M23864:W1]
          Length = 126

 Score = 45.8 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSI 65

Query: 678 DDRGKIKLSMK 688
           D+ GK+ LS+K
Sbjct: 66  DEEGKLNLSLK 76


>gi|227513988|ref|ZP_03944037.1| S1 domain RNA-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|227087632|gb|EEI22944.1| S1 domain RNA-binding protein [Lactobacillus fermentum ATCC 14931]
          Length = 725

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ +       ++  GD  TVWV  +D   R 
Sbjct: 652 EGTVRNVVDFGAFVDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVTVWVHAVD-KQRD 710

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 711 RIQLTM 716


>gi|220909392|ref|YP_002484703.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7425]
 gi|219866003|gb|ACL46342.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
          Length = 321

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D V V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEAG 272


>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
 gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V    +      +S
Sbjct: 7   LLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTES 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           +   Q       Y+    +T E        R+ +      ++A+   + ++  +P + + 
Sbjct: 67  VINCQ-------YSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAI-KSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFEE 175

Query: 485 HLGHMDFKVAG 495
             G     VA 
Sbjct: 176 VSGGPKLTVAA 186


>gi|46908540|ref|YP_014929.1| general stress protein 13 [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224919|ref|YP_002759026.1| general stress protein 13 containing a ribosomal S1 protein domain
           [Listeria monocytogenes Clip81459]
 gi|46881812|gb|AAT05106.1| S1 RNA binding domain protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|225877381|emb|CAS06095.1| Putative general stress protein 13 containing a ribosomal S1
           protein domain [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQ 692
           D ++ KI LS++  ++
Sbjct: 65  DEEKNKISLSIRATEE 80


>gi|312129985|ref|YP_003997325.1| tex-like protein [Leadbetterella byssophila DSM 17132]
 gi|311906531|gb|ADQ16972.1| Tex-like protein [Leadbetterella byssophila DSM 17132]
          Length = 706

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + SI D+ +V  I  G V  +  FG FV     +DGLVH+S L+   V   ++VVK    
Sbjct: 626 VNSIEDL-KVGMILPGVVTNITAFGCFVDVGVHQDGLVHVSHLANRFVKDPNEVVKVHQK 684

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V  K+L+ D  R +I LS+K
Sbjct: 685 VKAKVLEVDVPRKRISLSLK 704


>gi|283956238|ref|ZP_06373718.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791958|gb|EFC30747.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 1336]
          Length = 556

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      E  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDEERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|237739143|ref|ZP_04569624.1| transcription accessory protein [Fusobacterium sp. 2_1_31]
 gi|229423743|gb|EEO38790.1| transcription accessory protein [Fusobacterium sp. 2_1_31]
          Length = 722

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFVDIGLKNDALLHISEISNKYIDDPSKVLAVGQIIKVRIKDVDKDRGR 713

Query: 683 IKLSMKVVDQN 693
           + L+ K  +QN
Sbjct: 714 VGLTKK--EQN 722


>gi|194468066|ref|ZP_03074052.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|194452919|gb|EDX41817.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
          Length = 725

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVH+S++S + +     +V  GD V V + D D  R +
Sbjct: 652 QGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIRDPRAMVAVGDIVDVWIDDVDLKRQR 711

Query: 683 IKLSM 687
           I+L+M
Sbjct: 712 IQLTM 716


>gi|184152929|ref|YP_001841270.1| transcription accessory protein [Lactobacillus reuteri JCM 1112]
 gi|227363522|ref|ZP_03847642.1| S1 domain RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|325681871|ref|ZP_08161389.1| YhgF like protein [Lactobacillus reuteri MM4-1A]
 gi|183224273|dbj|BAG24790.1| transcription accessory protein [Lactobacillus reuteri JCM 1112]
 gi|227071459|gb|EEI09762.1| S1 domain RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|324978515|gb|EGC15464.1| YhgF like protein [Lactobacillus reuteri MM4-1A]
          Length = 727

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVH+S++S + +     +V  GD V V + D D  R +
Sbjct: 654 QGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIRDPRAMVAVGDIVDVWIDDVDLKRQR 713

Query: 683 IKLSM 687
           I+L+M
Sbjct: 714 IQLTM 718


>gi|254303539|ref|ZP_04970897.1| bifunctional penicillin tolerance protein LytB/ribosomal protein S1
           RpsA [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323731|gb|EDK88981.1| bifunctional penicillin tolerance protein LytB/ribosomal protein S1
           RpsA [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 827

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V V++ D   +DR 
Sbjct: 567 GTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHPEDR- 625

Query: 682 KIKLSMK 688
           K+KL +K
Sbjct: 626 KLKLGIK 632



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V+DFG  V    A  G +HIS++S +R+ K SDV K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLDFGLAVD-INALKGFIHISEVSWKRLDKLSDVYKVGDHIKAVVVSLDEAKRNVKL 542

Query: 686 SMKVVDQN 693
           S+K ++++
Sbjct: 543 SIKKLEED 550


>gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
 gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
          Length = 244

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+  R +  +R+I+      +   GS L   GDT+ I   ++         D   G   
Sbjct: 6   MRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKGQGW-- 63

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +  A   +++G      RL  R++   +  TA    T+ I  
Sbjct: 64  --VTAEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENTITIDC 121

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL D           A  P  + VA +++G++ +G+  +  
Sbjct: 122 DVIQADGGTRTAAITGGCVALHDALQYLTEKKQLATNPFQQFVASVSVGII-NGEPML-- 178

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 179 -DLDYQEDSNADTDMNVVMTEQG 200


>gi|291460836|ref|ZP_06025454.2| S1 RNA binding domain protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380427|gb|EFE87945.1| S1 RNA binding domain protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 733

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D D DRG+
Sbjct: 665 EGTVRNVVKFGAFVDIGLKNDALLHISEISNKYIDDPSKVLAVGQIIKVRIKDVDKDRGR 724

Query: 683 IKLSMKVVDQN 693
           + L+ K  +QN
Sbjct: 725 VGLTKK--EQN 733


>gi|259418160|ref|ZP_05742079.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
 gi|259347066|gb|EEW58880.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R  A S ++ G      RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PV+ I+ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVTMDPLVDPVSAISCGI 166


>gi|226310093|ref|YP_002769987.1| hypothetical protein BBR47_05060 [Brevibacillus brevis NBRC 100599]
 gi|226093041|dbj|BAH41483.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 720

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSL-----AEIEAAREMIRS----ITDVPEVNKIYKGQVV 628
           V++T AK+ I +     I  S L        E  + ++RS    ++D+  V    +G V 
Sbjct: 596 VKETAAKLGIGEPTLQDIVDSLLRPGRDPRDELPKPLLRSDVLQLSDL-SVGMKLQGTVR 654

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
            V+DFGAFV      DGLVHIS+L    V    +VV  GD V V +++ D+ R ++ ++M
Sbjct: 655 NVVDFGAFVDIGLKNDGLVHISRLKKGFVKHPLEVVTVGDIVDVWVVEIDEKRQRVGMTM 714


>gi|148543523|ref|YP_001270893.1| RNA-binding S1 domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|148530557|gb|ABQ82556.1| RNA binding S1 domain protein [Lactobacillus reuteri DSM 20016]
          Length = 726

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV      DGLVH+S++S + +     +V  GD V V + D D  R +
Sbjct: 653 QGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIRDPRAMVAVGDIVDVWIDDVDLKRQR 712

Query: 683 IKLSM 687
           I+L+M
Sbjct: 713 IQLTM 717


>gi|19703417|ref|NP_602979.1| transcription accessory protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713489|gb|AAL94278.1| Transcription accessory protein (S1 RNA binding domain)
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 723

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+HIS++S + +   S V+  G  + VK+ D D DRG+
Sbjct: 655 EGTVRNVVKFGAFIDIGLKNDALLHISEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGR 714

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 715 VGLTRK 720


>gi|68075199|ref|XP_679516.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56500280|emb|CAH98410.1| RNA helicase, putative [Plasmodium berghei]
          Length = 1162

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 13/90 (14%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL-STERVAKTSDVVKEGDTVWVK 673
           +VN I+ G++ K+ DFG F+ F    G ++GLVHI+ +    +    ++  K    V VK
Sbjct: 194 KVNNIFSGKIKKITDFGMFISFKTRDGYKEGLVHITDIDQNNKRINLNEKFKRNMIVKVK 253

Query: 674 LLDFDDRG----KIKLSMKVVDQNTGKPIV 699
           +     +G    KI L+M  VDQ TG+ +V
Sbjct: 254 I-----KGIFGEKISLNMSEVDQKTGQNLV 278


>gi|296328741|ref|ZP_06871255.1| S1 RNA binding domain protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154076|gb|EFG94880.1| S1 RNA binding domain protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 722

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+HIS++S + +   S V+  G  + VK+ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHISEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGR 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VGLTRK 719


>gi|269469082|gb|EEZ80635.1| ribosomal protein S1 [uncultured SUP05 cluster bacterium]
          Length = 558

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++ +  E  K  +G V  + D+GAFV   G  DGL+HI+ +S  RV   S+ +  GD + 
Sbjct: 184 ALLETLEEGKEIEGIVKNLADYGAFVDLGGV-DGLLHITDISWTRVNHPSEKLTIGDKIT 242

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L++D ++ ++ L +K   Q T  P
Sbjct: 243 VKVLNYDKEKMRVSLGLK---QLTASP 266



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +I+D   + K   G V  + D+GAFV      +GLVH+S++  T   A+ S +VK G  V
Sbjct: 269 NISDRLPIGKKVTGTVSNLTDYGAFVRIEDGVEGLVHVSEMDWTNANARPSKIVKLGQEV 328

Query: 671 WVKLLDF-DDRGKIKLSMKVVDQN 693
            V +LD  + + +I LSMK   +N
Sbjct: 329 DVVVLDVQESKHRISLSMKQALEN 352


>gi|86607005|ref|YP_475768.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
 gi|86555547|gb|ABD00505.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
          Length = 323

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  +GAF+   G   GL+HIS++S E V     V    D V V ++D D +RG+I LS K
Sbjct: 206 IKPYGAFIDIGGV-SGLLHISEISHEHVDTPHSVFNVNDEVKVMIIDLDAERGRISLSTK 264

Query: 689 VVDQNTG 695
            ++ N G
Sbjct: 265 QLEPNPG 271


>gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
 gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+DGR  + +R +    G      GS L   G T+     ++     E       GT  
Sbjct: 3   TRLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASV----TEGVPRWRKGTGE 58

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R     RL  R++   +   A    T+ +  
Sbjct: 59  GWLTAEYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL DA              PIS  +A +++G+V    D  +
Sbjct: 119 DVLQADGGTRTAAITGAFVALSDAVTWLAASGRLADPQPISCGIAAVSVGVV----DGRV 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD+G
Sbjct: 175 RLDLPYEEDARAEVDMNVVATDTG 198


>gi|260663250|ref|ZP_05864142.1| transcription accessory protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552442|gb|EEX25493.1| transcription accessory protein [Lactobacillus fermentum 28-3-CHN]
          Length = 725

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVH+S+++ +       ++  GD  TVWV  +D   R 
Sbjct: 652 EGTVRNVVDFGAFVDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVTVWVHAVD-KQRD 710

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 711 RIQLTM 716


>gi|218438198|ref|YP_002376527.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
 gi|218170926|gb|ACK69659.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
          Length = 284

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  + +G+V K+  +G FV   GA  GL+HI+Q+S   +   + + K G T+ V +++ D
Sbjct: 182 IGTLVEGKVAKIQPYGVFVDINGA-TGLLHITQVSGVHIDALTTIFKIGQTIKVMIVEID 240

Query: 679 D-RGKIKLSMKVVDQNTGK 696
           + + +I LS KV++   G+
Sbjct: 241 EYKNRIALSTKVLESYPGE 259


>gi|168053672|ref|XP_001779259.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669358|gb|EDQ55947.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           ++  ++ G V K++++GA+V        G++HIS +ST R+ + S+V+K GD V +  ++
Sbjct: 446 KLGSLHDGTVTKIVNYGAYVQINRTNIGGIIHISNMSTARINRVSNVLKVGDQVKMIAVE 505

Query: 677 FDDRGKIKLSMKVVDQNTG 695
               GK+  S  +++   G
Sbjct: 506 CPTPGKLSFSTALLEFEPG 524


>gi|323345184|ref|ZP_08085408.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269]
 gi|323094454|gb|EFZ37031.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269]
          Length = 590

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +   + I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+  
Sbjct: 197 AELEAQK---KEIISKLEKGQVLEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVSDP 252

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            +VV     + V +LDFD+  K I L +K
Sbjct: 253 HEVVALDQKINVVILDFDEEKKRIALGLK 281



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +  GD V   +L   DR +
Sbjct: 302 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMHVGDEVEAVILTL-DREE 360

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 361 RKMSLGI 367


>gi|225010709|ref|ZP_03701178.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-3C]
 gi|225005080|gb|EEG43033.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-3C]
          Length = 609

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGLVHI+ LS
Sbjct: 211 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLVHITDLS 269

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             R+   ++VV+    + V +LDFDD + +I+L +K ++++
Sbjct: 270 WSRINHPNEVVELDQKLNVVILDFDDNKSRIQLGLKQLEKH 310



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +KG V    +FG FV      DGL++IS LS T+++   S+ V  GDT+ V++L+ D  G
Sbjct: 412 HKGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFVAVGDTLEVEVLELDVDG 471

Query: 682 KIKLSM 687
           + KLS+
Sbjct: 472 R-KLSL 476



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +++D   +    KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V
Sbjct: 314 ALSDTIAIGDKVKGKVVVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFVKVGDEV 373

Query: 671 W--VKLLDFDDRGKIKLSMKVVDQN 693
              V  LD +DR K+ L +K + Q+
Sbjct: 374 EAVVLTLDREDR-KMSLGIKQLTQD 397


>gi|224035425|gb|ACN36788.1| unknown [Zea mays]
          Length = 370

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGD V V
Sbjct: 174 KIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKV 233

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +++ D  + +I LS++ ++++
Sbjct: 234 IVVNIDMTKSRIALSIRQLEED 255


>gi|194689506|gb|ACF78837.1| unknown [Zea mays]
 gi|194706906|gb|ACF87537.1| unknown [Zea mays]
 gi|219887451|gb|ACL54100.1| unknown [Zea mays]
          Length = 366

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGD V V
Sbjct: 170 KIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKV 229

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +++ D  + +I LS++ ++++
Sbjct: 230 IVVNIDMTKSRIALSIRQLEED 251


>gi|146298782|ref|YP_001193373.1| RNA-binding S1 domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146153200|gb|ABQ04054.1| RNA binding S1 domain protein [Flavobacterium johnsoniae UW101]
          Length = 707

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++SI D+ +   I  G V  + +FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 628 VKSIKDL-KTGMILPGIVNNITNFGCFVDIGIKESGLVHISQLKAGFVSDVNEVVKLHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V VK+ + D DR +I+L+M
Sbjct: 687 VDVKVTEVDEDRKRIQLTM 705


>gi|120436200|ref|YP_861886.1| 30S ribosomal protein S1 [Gramella forsetii KT0803]
 gi|117578350|emb|CAL66819.1| 30S ribosomal protein S1 [Gramella forsetii KT0803]
          Length = 620

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 223 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGTVKNITSYGVFVDLGGV-DGLVHITDLS 281

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             R+   +++V+    + V +LDFD+ + +I+L +K + Q+
Sbjct: 282 WSRINHPNEIVELDQKLNVVILDFDESKSRIQLGLKQLSQH 322



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAF+      +GL+H+S++S +  +    D V  GD V  ++L  D  DR
Sbjct: 338 KGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVNVGDEVEAQILTLDREDR 397

Query: 681 GKIKLSMKVVDQN 693
            K+ L +K + Q+
Sbjct: 398 -KMSLGIKQLSQD 409



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           IT    V   ++G V    +FG FV      DGL++IS LS T+++   S+    GD + 
Sbjct: 414 ITSKYPVGSKHEGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFTNVGDKLE 473

Query: 672 VKLLDFDDRG-KIKLSMKVVDQN 693
           V +L+ D  G K+ L  K ++ N
Sbjct: 474 VVVLELDVEGRKLSLGHKQIEDN 496


>gi|304439742|ref|ZP_07399640.1| S1 RNA binding domain protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371729|gb|EFM25337.1| S1 RNA binding domain protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 691

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I +I D+ ++  + KG V  V+DFG FV      +GL+HIS LS   V    D+V  GD 
Sbjct: 612 ILTIEDL-KIGDVLKGTVRNVVDFGCFVDIGLHSEGLIHISNLSKGFVKHPKDIVSVGDI 670

Query: 670 VWVKLLDFD 678
           V V+++  D
Sbjct: 671 VNVEVISID 679


>gi|255029855|ref|ZP_05301806.1| polynucleotide phosphorylase/polyadenylase [Listeria
          monocytogenes LO28]
          Length = 50

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 1  MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVV 45
          M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V
Sbjct: 1  MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAV 45


>gi|261341748|ref|ZP_05969606.1| hypothetical protein ENTCAN_08227 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316116|gb|EFC55054.1| tRNA nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|24584046|ref|NP_609618.2| Ski6 [Drosophila melanogaster]
 gi|7298022|gb|AAF53263.1| Ski6 [Drosophila melanogaster]
 gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V    +      +S
Sbjct: 7   LLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTES 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           +   Q       Y+    +T E        R+ +      ++A+   + ++  +P + + 
Sbjct: 67  VINCQ-------YSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAI-KSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFEE 175

Query: 485 HLGHMDFKVAG 495
             G     VA 
Sbjct: 176 VSGGPKLTVAA 186


>gi|308274397|emb|CBX30996.1| Uncharacterized protein HI0568 [uncultured Desulfobacterium sp.]
          Length = 767

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+S+LS   V   +DVVK    V V +LD D DR +I
Sbjct: 654 GIVTNVTAFGAFVDVGVHQDGLVHVSELSDRYVKNPADVVKVQQKVTVTVLDVDIDRKRI 713

Query: 684 KLSMKVV 690
            LSMK V
Sbjct: 714 SLSMKKV 720


>gi|254302494|ref|ZP_04969852.1| transcriptional accessory protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322686|gb|EDK87936.1| transcriptional accessory protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 722

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+HIS++S + +   S V+  G  + VK+ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHISEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGR 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VGLTRK 719


>gi|325298110|ref|YP_004258027.1| RNA binding S1 domain-containing protein [Bacteroides salanitronis
           DSM 18170]
 gi|324317663|gb|ADY35554.1| RNA binding S1 domain protein [Bacteroides salanitronis DSM 18170]
          Length = 596

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++    I+ + E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQKKEIISKL-EKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPHEVVQLDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +K GD +   +L  D D  
Sbjct: 303 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEIEAVILTLDRDER 362

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 363 KMSLGIK 369


>gi|210620543|ref|ZP_03292091.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
 gi|210155257|gb|EEA86263.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
          Length = 712

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V+DFGAFV      DGLVH  ++   +V    +VV  GD + VK+++ D ++
Sbjct: 645 VLKGTVRNVVDFGAFVDIGVKTDGLVHKKEMGV-KVNDPMEVVSVGDIIDVKVVNVDKEK 703

Query: 681 GKIKLSMKV 689
            +I LSM V
Sbjct: 704 NRIALSMNV 712


>gi|86133043|ref|ZP_01051625.1| 30S ribosomal protein S1 [Polaribacter sp. MED152]
 gi|85819906|gb|EAQ41053.1| 30S ribosomal protein S1 [Polaribacter sp. MED152]
          Length = 609

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 6/105 (5%)

Query: 595 IASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA  E+  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 213 VVVSHKALIEADIELQKKEIIGQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLVHITDLS 271

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             R+   ++VV+    + V +LDFDD + +I+L +K   Q T  P
Sbjct: 272 WSRINHPNEVVELDQKLNVVILDFDDNKSRIQLGLK---QLTAHP 313



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DRG 681
           G+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V  ++L  D  DR 
Sbjct: 329 GEVVVLADYGAFVEVEQGVEGLIHVSEMSWSTHLRSAQDFVKVGDKVEAQVLTLDREDR- 387

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 388 KMSLGIK 394



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           IT    V   + G V    +FG FV      DGLV+IS LS T+++   SD V  G  + 
Sbjct: 404 ITTKYPVGSTHTGTVRNYTNFGVFVELEEGIDGLVYISDLSWTKKIKHPSDFVTVGQKLD 463

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           V++L+ D +  K+ L  K    N
Sbjct: 464 VQVLELDVENRKLNLGHKQTQDN 486


>gi|333031496|ref|ZP_08459557.1| RNA binding S1 domain protein [Bacteroides coprosuis DSM 18011]
 gi|332742093|gb|EGJ72575.1| RNA binding S1 domain protein [Bacteroides coprosuis DSM 18011]
          Length = 597

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++    I+ + E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQKKEIISKL-EKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD+ K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDQKKRIALGLK 282



 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFVEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|257468117|ref|ZP_05632213.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|317062402|ref|ZP_07926887.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|313688078|gb|EFS24913.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
          Length = 254

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 23/204 (11%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR  +++R+I           GS L   G+T+ I   ++     E+    + G  
Sbjct: 16  KLREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASV----SEKVPPFMRGQG 71

Query: 371 RNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y+ +P ATGE     S  G  S R +   RL  RA+   +        T+ I 
Sbjct: 72  KGWLTAEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLEKLGERTITID 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +   ++ G  +AL  A             PI   VA I++G+V+ G   + 
Sbjct: 132 CDVIQADGGTRTTSISGGFIALALAVKKLMKDRVLNVNPIVSNVAAISVGIVR-GTPML- 189

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED    +D  V     G
Sbjct: 190 --DLMYTEDSAAEVDMNVVMNGKG 211


>gi|296125740|ref|YP_003632992.1| RNA binding S1 domain protein [Brachyspira murdochii DSM 12563]
 gi|296017556|gb|ADG70793.1| RNA binding S1 domain protein [Brachyspira murdochii DSM 12563]
          Length = 554

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + +G+V  V  FGAFV      +GLVH+S LS    V   SD VK+G  +  K+LD +  
Sbjct: 280 VIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAA 339

Query: 680 RGKIKLSMKVVDQN 693
             K+ L +K V +N
Sbjct: 340 ERKLTLGLKQVKEN 353



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E     I S  +  + N I  G+V  +  FGAF+      DG + I  +S ++V     +
Sbjct: 176 ETQNASIESFLNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSI 235

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + +G+    K+L  D +  K+ L +K +D++
Sbjct: 236 ISKGEERMFKVLHIDKENKKVDLGIKQLDED 266


>gi|217976862|ref|YP_002361009.1| 30S ribosomal protein S1 [Methylocella silvestris BL2]
 gi|217502238|gb|ACK49647.1| ribosomal protein S1 [Methylocella silvestris BL2]
          Length = 582

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  
Sbjct: 199 EEGQVIEGMVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEVLSIGQTVRVKIIKI 257

Query: 678 D-DRGKIKLSMK 688
           + D  +I L MK
Sbjct: 258 NHDTHRISLGMK 269



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+  ++G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 VDARFRGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVATSQEVDVQVLEV 344

Query: 678 DD-RGKIKLSMK 688
           D  + +I L +K
Sbjct: 345 DPVKRRISLGLK 356



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G+V    +FG F+   G  DG+VH+S L  ++  + + +  K+GD V  K+LD D ++ 
Sbjct: 377 EGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWKKPGEQAIEDYKKGDIVRAKVLDVDIEKE 436

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 437 RISLGVK 443


>gi|269991313|emb|CAX12497.1| 30S ribosomal protein S1 [Fucus vesiculosus]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  +A I +   +   +     +  IY G +V + DFG F++  G +  LVHIS++    
Sbjct: 168 SFHIAHISSTSAVFSKVNKNLILEAIYLGNIVSIKDFGIFINILGIK-CLVHISEICQNP 226

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
               +   K GD + +K++  D +RGKI ++++
Sbjct: 227 TIDLTSFYKRGDQISLKIISKDIERGKISITLE 259


>gi|241956141|ref|XP_002420791.1| RNA-dependent ATPase/ATP-dependent RNA helicase, putative;
           pre-mRNA-splicing factor ATP-dependent RNA helicase,
           putative [Candida dubliniensis CD36]
 gi|223644133|emb|CAX41876.1| RNA-dependent ATPase/ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKLLD 676
           V +IY G V  + ++GAF+       GL HISQ+S +  R+  T ++++    V+ K++D
Sbjct: 83  VGEIYSGTVEGLTNYGAFIKIENT-SGLCHISQMSFDGSRIEST-NILQPKQKVFAKVID 140

Query: 677 FD-DRGKIKLSMKVVDQNTGK 696
              +  KI LSM+ ++Q TG+
Sbjct: 141 IQANHTKISLSMRGINQTTGQ 161


>gi|212530734|ref|XP_002145524.1| rRNA biogenesis protein RRP5, putative [Penicillium marneffei ATCC
            18224]
 gi|210074922|gb|EEA29009.1| rRNA biogenesis protein RRP5, putative [Penicillium marneffei ATCC
            18224]
          Length = 1807

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V ++  G+V KV DFGAF+   G+ +  GL H SQ++ + V     + + GD V  K+L
Sbjct: 1305 KVGQVVTGKVRKVEDFGAFIVIDGSANVSGLCHRSQMAEQNVQDARKLFEAGDIVKAKIL 1364

Query: 676  DFD-DRGKIKLSMKV 689
              D ++GK+   +K 
Sbjct: 1365 KIDANQGKVSFGLKA 1379


>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 14/182 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R+I  ++ +     GS L+ +G T+ I +V  G R         + TQ  
Sbjct: 5   RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQ-GPR---------AKTQSE 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
             ++ Y+  P +  E  R     +         + +   ++         + I   + ++
Sbjct: 55  LLLIEYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQN 114

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           DGSS  A     +LAL+DAGV +   +  + +GL  D  + I+  D++ +E      +  
Sbjct: 115 DGSSKSAVFNAITLALLDAGVSMKDFLVSVTVGL--DQGNLIV--DLTQEESKTAQGELT 170

Query: 493 VA 494
           ++
Sbjct: 171 IS 172


>gi|313141474|ref|ZP_07803667.1| 30s ribosomal protein s1 [Helicobacter canadensis MIT 98-5491]
 gi|313130505|gb|EFR48122.1| 30s ribosomal protein s1 [Helicobacter canadensis MIT 98-5491]
          Length = 453

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G + K+  FG FV   G  +GLVH +++S +     S + KEGD V VK+L +D D+ +
Sbjct: 209 EGTIKKITSFGMFVDVEGV-EGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKR 267

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 268 LALSIK 273



 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + DFGAF+   G  DGL+H       +  K  D++K GD + VK+   D ++
Sbjct: 379 ILKGSVATLTDFGAFIKLDGI-DGLLHNEDAYWNKNEKCKDLMKIGDEIEVKIAKIDREK 437

Query: 681 GKIKLSMK 688
            +I L+ K
Sbjct: 438 ERISLTRK 445


>gi|289435636|ref|YP_003465508.1| S1 RNA binding domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171880|emb|CBH28426.1| S1 RNA binding domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313636541|gb|EFS02268.1| general stress protein 13 [Listeria seeligeri FSL S4-171]
          Length = 117

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDDSTQGLVHISEITHGFVKDIHDFLEVGQVVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVD 691
           D ++ KI LS++  +
Sbjct: 65  DEEKNKISLSIRATE 79


>gi|257126136|ref|YP_003164250.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
 gi|257050075|gb|ACV39259.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
          Length = 231

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 19/173 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R++      +    GS L   G+T+ I   T+    +E+    L GT  
Sbjct: 1   MRNNNRKNDEMREVKVTKNYIIHPEGSVLIEFGNTKVICNATV----EEKIPRWLRGTGS 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R +   RL  RA+   +        T+ I  
Sbjct: 57  GWITAEYSMLPRATNTRVQRESTKGKLSGRTMEIQRLIGRALRATIDLEKLGERTIMIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKD 469
           ++ ++DG +  A++ G+ LAL  A            +PI   VA I++G V++
Sbjct: 117 DVIQADGGTRTASITGAYLALELAIEKLIDERKLKEMPIKAKVAAISVGKVRN 169


>gi|218556206|ref|YP_002389119.1| ribonuclease PH [Escherichia coli IAI1]
 gi|218697364|ref|YP_002405031.1| ribonuclease PH [Escherichia coli 55989]
 gi|254038843|ref|ZP_04872895.1| ribonuclease PH [Escherichia sp. 1_1_43]
 gi|218354096|emb|CAV00651.1| ribonuclease PH [Escherichia coli 55989]
 gi|218362974|emb|CAR00611.1| ribonuclease PH [Escherichia coli IAI1]
 gi|226838808|gb|EEH70835.1| ribonuclease PH [Escherichia sp. 1_1_43]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 23/206 (11%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G
Sbjct: 6   DFNMRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKG 61

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLR 424
             +      Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ 
Sbjct: 62  QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+  
Sbjct: 122 LDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE-- 178

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             + D+   ED     D  V  T+ G
Sbjct: 179 -AICDLEYVEDSAAETDMNVVMTEDG 203


>gi|17227565|ref|NP_484113.1| ribonuclease PH [Nostoc sp. PCC 7120]
 gi|21759403|sp|Q8Z0M2|RNPH_ANASP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17135047|dbj|BAB77593.1| ribonuclease PH [Nostoc sp. PCC 7120]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 22/229 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+      +   GS L I G+T+ +  V++     E     L+G+ + 
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVA----ESVPKFLTGSGKG 60

Query: 373 DFMMHYNFLPCATGEV--SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     +   S R     RL  R++   L   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQQRHERELLKLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A + G  +AL +A       GV    P+   +A +++GL++  + ++ L+ I
Sbjct: 121 QADAGTRTAAITGGFVALAEAISQLLQRGVLERSPLCGQIAAVSVGLLEQ-EAYLDLNYI 179

Query: 480 SGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
              ED    +DF V    + GI  +Q   + G  S   +   L  A+ G
Sbjct: 180 ---EDVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETG 225


>gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040]
 gi|122397509|sp|Q1GCL2|RNPH_SILST RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|99038992|gb|ABF65604.1| RNAse PH [Ruegeria sp. TM1040]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R  A S ++ G      RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PV+ I+ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVTMDPLVDPVSAISCGI 166


>gi|126734415|ref|ZP_01750162.1| ribonuclease PH [Roseobacter sp. CCS2]
 gi|126717281|gb|EBA14145.1| ribonuclease PH [Roseobacter sp. CCS2]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 30/175 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R++S + G+     GS L   G+T  +   T+    DE+    L  +  
Sbjct: 1   MRPSGRQTNEMREVSIETGVTMHAEGSCLIKCGNTHVLCTATI----DERVPPFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG---------RLARRAIHPVLPQTAQFPYT 422
                 Y  LP AT   +RM    RRE  +G         RL  R++   + + A     
Sbjct: 57  GWVTAEYGMLPRATN--TRM----RREAKNGQSGRTQEIQRLIGRSLRAGVDRVALSERQ 110

Query: 423 LRIVSEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           + +  ++ ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+
Sbjct: 111 IVVDCDVIQADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLIDPVAAISCGI 165


>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 26/192 (13%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYV 363
           M++   R DGR+   +R  +     L R HGS+ + +GDT  +  V     GTR+     
Sbjct: 1   MMEGGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRK----- 55

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
               G       +   + P  TG++ R      +E  +    +R +  +   T     T 
Sbjct: 56  ----GENPEKASIEVVWKP-KTGQIGR------QEREYEMTLKRTLQSICLLTVHPNTTT 104

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +V ++   DGS     +  S  AL  AG+P+      I+ G++ +G   +++ D S  E
Sbjct: 105 SVVLQVVGDDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNG---VVILDTSRAE 161

Query: 484 DH----LGHMDF 491
           +       H+ F
Sbjct: 162 EQQARSFAHLVF 173


>gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     +      E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP +T   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTSEYSMLPRSTN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  VA +++G+V    D 
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIV----DG 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             L D+  +ED     D  V  T  G
Sbjct: 173 TPLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|146276457|ref|YP_001166616.1| RNA-binding S1 domain-containing protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554698|gb|ABP69311.1| RNA binding S1 domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 772

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +V  + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 642 EGVEEISDL-KVGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAG 700

Query: 668 D 668
           D
Sbjct: 701 D 701


>gi|288927739|ref|ZP_06421586.1| ribosomal protein S1 [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330573|gb|EFC69157.1| ribosomal protein S1 [Prevotella sp. oral taxon 317 str. F0108]
          Length = 591

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+EA +   + I    E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   
Sbjct: 198 ELEAQK---KEIISKLEKGQILEGTVKNITTYGVFVDLGGV-DGLIHITDLSWGRVSDPH 253

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           +VV     + V +LDFDD + +I L +K
Sbjct: 254 EVVSLDQKINVVILDFDDEKRRIALGLK 281



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +  GD V   +L  D D  
Sbjct: 302 KGKVVVIADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDRDER 361

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 362 KMSLGIK 368


>gi|258544503|ref|ZP_05704737.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
 gi|258520238|gb|EEV89097.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+ +   GS+L   GDT  +   ++    +E+    L G  +
Sbjct: 1   MRASNRRPDQLRPVSIERGVNKYAEGSALIRCGDTHVLCTASV----EEKVPPFLRGKNQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E     S  G    R +   RL  R++  V+  TA     + I  
Sbjct: 57  GWVTAEYGMLPRATHERTVRESARGKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL DA             P+   +A +++G+ +       L
Sbjct: 117 DVLQADGGTRTAAISGGFVALADAIRTLIQQGRLKQNPLHGQLAAVSVGVYRG----TPL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  +   D G
Sbjct: 173 LDLEYAEDSEAETDMNIVMNDGG 195


>gi|225619757|ref|YP_002721014.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
 gi|225214576|gb|ACN83310.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
          Length = 554

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I  G+V  V  FGAFV      +GLVH+S LS    V   SD VK+G  +  K+LD +  
Sbjct: 280 IINGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAA 339

Query: 680 RGKIKLSMKVVDQN 693
             K+ L +K V +N
Sbjct: 340 ERKLTLGLKQVKEN 353



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N I  G+V  +  FGAF+      DG + I  +S ++V     V+ +G+    K+L  D 
Sbjct: 192 NDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFKVLHIDK 251

Query: 680 RG-KIKLSMKVVDQN 693
              K+ L +K +D++
Sbjct: 252 ENRKVDLGLKQLDED 266


>gi|226509759|ref|NP_001151317.1| RNA binding S1 [Zea mays]
 gi|195645792|gb|ACG42364.1| RNA binding S1 [Zea mays]
          Length = 366

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGD V V
Sbjct: 170 KIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKV 229

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
            +++ D  + +I LS++ ++++
Sbjct: 230 IVVNIDMTKSRIALSIRQLEED 251


>gi|255724334|ref|XP_002547096.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134987|gb|EER34541.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1722

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 5/110 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN  ++G V + +   +E+    ++++S  D+  V  I++G V    DFG FV   G
Sbjct: 1203 GKIVNCKEEGRV-LMTLKESEVNGELKLMKSFDDLS-VGDIFEGTVTSTTDFGVFVKLDG 1260

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              +  GL H S++S   V     +  +GD V VK+L  D ++ ++ L MK
Sbjct: 1261 TVNVSGLCHHSEISENDVENVKMLFGDGDRVKVKILKIDSEKKQLSLGMK 1310


>gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201]
 gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I+   G  ++  GS+L   G T+ +   +L     E     L G  R
Sbjct: 1   MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASL----TEGVPRWLKGEGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 57  GWVTAEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL +A       GV      P++  VA +++G++    D +
Sbjct: 117 DVLQADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGII----DGV 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V  T SG
Sbjct: 173 PMLDLPYVEDVRAETDMNVVVTGSG 197


>gi|209547618|ref|YP_002279535.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226736929|sp|B5ZMW8|RNPH_RHILW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209533374|gb|ACI53309.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +    +   GS L   GDT  +   +L    +E+    L  + +
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G  +AL D 
Sbjct: 117 DVIQADGGTRTASITGGWIALYDC 140


>gi|87121112|ref|ZP_01077003.1| ribonuclease PH [Marinomonas sp. MED121]
 gi|86163604|gb|EAQ64878.1| ribonuclease PH [Marinomonas sp. MED121]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 26/248 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +RD+       +   GS L   GDT+ I   TL           L G  +
Sbjct: 1   MRPSGRAVDQLRDLKITRNFTKHAEGSVLIECGDTKVICTATL----VPGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  + R +   RL  R++   +       +T+ I 
Sbjct: 57  GWITAEYGMLPRSTHSRVDREAAR-GKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G  +AL DA             PI   +A I++G+ K G+  + 
Sbjct: 116 CDVIQADGGTRTASITGGFVALADAVKKLVERKKIKENPIVSQIAAISVGVYK-GEPVL- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             D+   ED     D  V   D  G   +Q   +    S+  M+  L+ A++G   IL  
Sbjct: 174 --DLDYPEDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQA 231

Query: 535 MSKVLSES 542
               L E+
Sbjct: 232 QRDALFEN 239


>gi|224417933|ref|ZP_03655939.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491]
          Length = 451

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G + K+  FG FV   G  +GLVH +++S +     S + KEGD V VK+L +D D+ +
Sbjct: 207 EGTIKKITSFGMFVDVEGV-EGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKR 265

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 266 LALSIK 271



 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + DFGAF+   G  DGL+H       +  K  D++K GD + VK+   D ++
Sbjct: 377 ILKGSVATLTDFGAFIKLDGI-DGLLHNEDAYWNKNEKCKDLMKIGDEIEVKIAKIDREK 435

Query: 681 GKIKLSMK 688
            +I L+ K
Sbjct: 436 ERISLTRK 443


>gi|295095228|emb|CBK84318.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
 gi|75431903|sp|Q5E8P0|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 23/191 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD---DF 473
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G + +G+   D 
Sbjct: 117 DVIQADGGTRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVG-IYNGEAICDL 175

Query: 474 IILSDISGDED 484
             + D + D D
Sbjct: 176 EYVEDSAADTD 186


>gi|261403312|ref|YP_003247536.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           vulcanius M7]
 gi|261370305|gb|ACX73054.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           vulcanius M7]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK G  V  
Sbjct: 4   DFPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVA 63

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           K+L  D+R G I LS+K V +   +  V
Sbjct: 64  KVLRVDERKGHIDLSLKRVTEQQKRAKV 91


>gi|237749145|ref|ZP_04579625.1| small subunit ribosomal protein S1 [Oxalobacter formigenes OXCC13]
 gi|229380507|gb|EEO30598.1| small subunit ribosomal protein S1 [Oxalobacter formigenes OXCC13]
          Length = 568

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VVK GD V V +L
Sbjct: 285 PQGTRLF-GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVKLGDEVEVMVL 343

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 344 EIDEERRRISLGMKQCKAN 362



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAF+   G  DGL+HI+ L+  RV   S+++  G  +  K+L +D ++
Sbjct: 204 IVNGVVKNITDYGAFIDLGGI-DGLLHITDLAWRRVRHPSEMLTVGQEITAKVLKYDQEK 262

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 263 NRVSLGVK 270



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS     +T+    K+GD +   +L  D +R +
Sbjct: 379 GAIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGETAVHNFKKGDELEAVVLAIDVERER 438

Query: 683 IKLSMK 688
           + L +K
Sbjct: 439 VSLGVK 444


>gi|322379236|ref|ZP_08053627.1| 30S ribosomal protein S1 [Helicobacter suis HS1]
 gi|322379691|ref|ZP_08054004.1| 30S ribosomal protein S1 [Helicobacter suis HS5]
 gi|321147840|gb|EFX42427.1| 30S ribosomal protein S1 [Helicobacter suis HS5]
 gi|321148376|gb|EFX42885.1| 30S ribosomal protein S1 [Helicobacter suis HS1]
          Length = 563

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++G++ ++     ++ +  +  +S   + E   IY G V  V  FGAFV   G  +GLVH
Sbjct: 182 ENGSISVSRKRFFDVYSKYQHEQS-QKLVESGAIYTGIVKSVTSFGAFVEVEGV-EGLVH 239

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
            ++++       +   KEGD V V+ L +D++  ++ LS+K   +N    I
Sbjct: 240 YTEITHRGSTNPAKYFKEGDAVQVRALSYDEKKRRLLLSVKATIENPWNEI 290



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 607 REMIRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           R  ++ ++D P         V  + +G+V  + DFGAF++  G  DGL+H      E+  
Sbjct: 363 RVSLKQLSDKPFNEFVSKYRVGDLVEGKVATLTDFGAFINLGGV-DGLLHNKDAFWEQDK 421

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           K  +  K GD +  K+L  + +  KI L MK
Sbjct: 422 KCKEHFKIGDVIQTKILRINKEEEKISLEMK 452


>gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
 gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYSMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V      
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGG---- 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           + L D+  +ED     D  V  T  G
Sbjct: 173 VPLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|260911616|ref|ZP_05918200.1| 30S ribosomal protein S1 [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634264|gb|EEX52370.1| 30S ribosomal protein S1 [Prevotella sp. oral taxon 472 str. F0295]
          Length = 514

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+EA +   + I    E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   
Sbjct: 121 ELEAQK---KEIISKLEKGQILEGTVKNITTYGVFVDLGGV-DGLIHITDLSWGRVSDPH 176

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           +VV     + V +LDFDD + +I L +K
Sbjct: 177 EVVSLDQKINVVILDFDDEKRRIALGLK 204



 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +  GD V   +L  D D  
Sbjct: 225 KGKVVVIADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDRDER 284

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 285 KMSLGIK 291


>gi|169839599|ref|ZP_02872787.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7
           single-cell isolate TM7a]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 32/44 (72%)

Query: 171 QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214
           +  + L V+GT+DAV MVE  A ++SE+V+L+AI+FGH   K +
Sbjct: 10  ESEIQLSVAGTKDAVTMVEAGAKEVSEEVMLEAIMFGHERIKEI 53


>gi|154309384|ref|XP_001554026.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
 gi|150852410|gb|EDN27602.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
          Length = 1678

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +VN++  G++ KV DFG F+   G+ +  GL H S+++ +RV     +  EGD V   +L
Sbjct: 1312 QVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSEGDAVKAIVL 1371

Query: 676  DFD-DRGKIKLSMK 688
              D ++ +I  SMK
Sbjct: 1372 KMDTEKKRISFSMK 1385


>gi|320115997|ref|YP_004186156.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319929088|gb|ADV79773.1| RNA binding S1 domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 367

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 594 KIASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           KI  S    ++  RE ++   ++++ E   I +G+V  ++D GAFV   G  DG + +S+
Sbjct: 164 KIVGSQKEVLKLEREKVKKALLSNLKE-GDIVEGKVKNIIDKGAFVD-IGGFDGFIPLSE 221

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           +S ER+    +V+  GD V V +L+ D++  KI LS++ V
Sbjct: 222 ISWERIKNPREVLGIGDKVSVYILNVDEKKEKITLSLRKV 261


>gi|218258074|ref|ZP_03474501.1| hypothetical protein PRABACTJOHN_00154 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225793|gb|EEC98443.1| hypothetical protein PRABACTJOHN_00154 [Parabacteroides johnsonii
           DSM 18315]
          Length = 597

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KDIISKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   ++V+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSHPEEIVQLDQKINVVILDFDDEKKRIALGLK 282



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S T+ +    D +K GD +   +L  D D  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWTQHLRSAQDFMKVGDEIEAVILTLDRDER 362

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 363 KMSLGIK 369


>gi|296100489|ref|YP_003610635.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295054948|gb|ADF59686.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|326391105|ref|ZP_08212652.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992890|gb|EGD51335.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 367

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 594 KIASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           KI  S    ++  RE ++   ++++ E   I +G+V  ++D GAFV   G  DG + +S+
Sbjct: 164 KIVGSQKEVLKLEREKVKKALLSNLKE-GDIVEGKVKNIIDKGAFVD-IGGFDGFIPLSE 221

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           +S ER+    +V+  GD V V +L+ D++  KI LS++ V
Sbjct: 222 ISWERIKNPREVLGIGDKVSVYILNVDEKKEKITLSLRKV 261


>gi|319441882|ref|ZP_07991038.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++         DS  G    
Sbjct: 8   RFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGW--- 64

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT E  RM      G    R     RL  R++   +   A    T+ I 
Sbjct: 65  -LTAEYAMLPSATAE--RMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGENTVNID 121

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G++    D + 
Sbjct: 122 CDVLQADGGTRTASITGAYVALADALAVLQQRGVVPGEPLLDPVAAVSVGVI----DGVP 177

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED    +D  V  T  G
Sbjct: 178 CLDLPYPEDSRADVDMNVVMTAEG 201


>gi|154493955|ref|ZP_02033275.1| hypothetical protein PARMER_03299 [Parabacteroides merdae ATCC
           43184]
 gi|154086215|gb|EDN85260.1| hypothetical protein PARMER_03299 [Parabacteroides merdae ATCC
           43184]
          Length = 597

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KDIISKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   ++V+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSHPEEIVQLDQKINVVILDFDDEKKRIALGLK 282



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S T+ +    D +K GD +   +L  D D  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWTQHLRSAQDFMKVGDEIEAVILTLDRDER 362

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 363 KMSLGIK 369


>gi|150009217|ref|YP_001303960.1| 30S ribosomal protein S1 [Parabacteroides distasonis ATCC 8503]
 gi|255015824|ref|ZP_05287950.1| 30S ribosomal protein S1 [Bacteroides sp. 2_1_7]
 gi|256841773|ref|ZP_05547279.1| ribosomal protein S1 [Parabacteroides sp. D13]
 gi|262384104|ref|ZP_06077240.1| 30S ribosomal protein S1 [Bacteroides sp. 2_1_33B]
 gi|298376996|ref|ZP_06986950.1| ribosomal protein S1 [Bacteroides sp. 3_1_19]
 gi|301311010|ref|ZP_07216939.1| ribosomal protein S1 [Bacteroides sp. 20_3]
 gi|149937641|gb|ABR44338.1| 30S ribosomal protein S1 [Parabacteroides distasonis ATCC 8503]
 gi|256736667|gb|EEU49995.1| ribosomal protein S1 [Parabacteroides sp. D13]
 gi|262295002|gb|EEY82934.1| 30S ribosomal protein S1 [Bacteroides sp. 2_1_33B]
 gi|298265980|gb|EFI07639.1| ribosomal protein S1 [Bacteroides sp. 3_1_19]
 gi|300831073|gb|EFK61714.1| ribosomal protein S1 [Bacteroides sp. 20_3]
          Length = 596

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KDIISKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   ++V+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSHPEEIVQLDQKINVVILDFDDEKKRIALGLK 282



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S T+ +    D +K GD +   +L  D D  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWTQHLRSAQDFMKVGDEIEAVILTLDRDER 362

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 363 KMSLGIK 369


>gi|167720743|ref|ZP_02403979.1| ribonuclease PH [Burkholderia pseudomallei DM98]
          Length = 219

 Score = 45.4 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 23/193 (11%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +RD+       +   G+ L   GDT+ I   ++  R  E   +   G         Y  L
Sbjct: 1   MRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGW----LTAEYGML 56

Query: 382 PCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT   S   A   ++ G      RL  RA+  V    A  P TL +  ++ ++DG + 
Sbjct: 57  PRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQADGGTR 116

Query: 438 MATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G+ +A  DA             PI+  VA I++G+   G   ++  D+  DED  
Sbjct: 117 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF--GGTPVL--DLDYDEDSA 172

Query: 487 GHMDFKVAGTDSG 499
              D  V  T +G
Sbjct: 173 CDTDMNVVMTGAG 185


>gi|225016511|ref|ZP_03705703.1| hypothetical protein CLOSTMETH_00417 [Clostridium methylpentosum
           DSM 5476]
 gi|224950740|gb|EEG31949.1| hypothetical protein CLOSTMETH_00417 [Clostridium methylpentosum
           DSM 5476]
          Length = 717

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 8/91 (8%)

Query: 604 EAAREMIRSITDVPEVNKI-----YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           E  + ++RS  DV E+  +      KG V  V+DFGAFV      DGLVH+SQL+   V 
Sbjct: 622 ELPKPLLRS--DVLELKDLKPGMELKGTVRNVIDFGAFVDIGVHEDGLVHVSQLANRFVK 679

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              DVVK GD V V +LD D  R +I L+MK
Sbjct: 680 HPLDVVKVGDVVTVWVLDVDLKRKRISLTMK 710


>gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043]
 gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043]
          Length = 245

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  +  R+I+ + G  +   GS L   GDT+ +   ++    +      L G Q+
Sbjct: 6   MRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASV----EAGVPRWLRGKQQ 61

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  +  G    R +   RL  R++  V+       +T+ +  
Sbjct: 62  GWITAEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITVDC 121

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G  +AL+DA
Sbjct: 122 DVIQADGGTRTASITGGCVALVDA 145


>gi|262038695|ref|ZP_06012055.1| protein YhgF [Leptotrichia goodfellowii F0264]
 gi|261747247|gb|EEY34726.1| protein YhgF [Leptotrichia goodfellowii F0264]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R  I S+ D+ E   I +G V  V  FG FV      D L+HISQLS + VA  + ++  
Sbjct: 638 RSDILSMDDLKE-GMILEGTVRNVAKFGVFVDIGLKNDALIHISQLSDKFVADPTKIMSV 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  +  K+L  D +R ++ L++K
Sbjct: 697 GKIIKAKILSVDKERARVSLTIK 719


>gi|227328057|ref|ZP_03832081.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVAKGKLKKNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|154254011|ref|YP_001414835.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
 gi|171769691|sp|A7HZ45|RNPH_PARL1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154157961|gb|ABS65178.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 19/172 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G+ +   GS L   GDT  +   +L    +E+    L G  +
Sbjct: 1   MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASL----EERVPPFLKGGGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  R  A   ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHERMRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISKP-----VAGIAMGLVK 468
           ++ ++DG +  A++ G+ +AL      M A   IS P     VA I+ G+ +
Sbjct: 117 DVLQADGGTRTASITGAWVALHQCIEWMRARSMISAPVLKDHVAAISCGIYQ 168


>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V    +      +S
Sbjct: 7   LLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTES 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           +   Q       Y+    +T E        R+ +      ++A+   + ++  +P + + 
Sbjct: 67  VINCQ-------YSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAI-KSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFEE 175

Query: 485 HLGHMDFKVAG 495
             G     VA 
Sbjct: 176 VSGGPKLTVAA 186


>gi|1279215|emb|CAA65789.1| putative ribosomal protein S1 [Bacteroides fragilis]
          Length = 431

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 587 IDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           ++  G   +  S  A IEA  E   + I    E  ++ +G V  +  +G F+   G  DG
Sbjct: 14  LNQPGIQNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DG 72

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           L+HI+ LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 73  LIHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 116



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 137 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 196

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 197 KMSLGIKQLKQDPWETI 213


>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
           acidocaldarius DSM 639]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 14/155 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L++ VR+DGR     R +   +G  ++  GS+L   G+T  +  V L   ED  Y D+  
Sbjct: 23  LERGVRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKL--EEDSPYPDT-- 78

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV----LPQTAQFP--- 420
              + + +++   LP A  E    G P    I   R+  R++       L +    P   
Sbjct: 79  -PNQGNLIVNVELLPLAY-ETFEPGPPDENSIELARIVDRSLRDSKAIDLSKLVIAPGKK 136

Query: 421 -YTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            +TL +   + + DG+   A +  S  A+ D  +P
Sbjct: 137 VWTLWVDVYVLDYDGNILDACMLASIAAIYDTKLP 171


>gi|212723248|ref|NP_001131522.1| hypothetical protein LOC100192861 [Zea mays]
          Length = 541

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 10/106 (9%)

Query: 596 ASSSLAEIEAAREMIRSI--TDVPEVNK-------IYKGQVVKVMDFGAFVHFCGARDGL 646
           A +S  +  +AR++ R+I  +++P +N+        + G+V+ +  FG FV      +GL
Sbjct: 115 AEASTGQASSARKLGRNIRKSEMPPLNEEDLVPGASFTGKVMSIKPFGVFVDIGAFTEGL 174

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVD 691
           VHIS++S   V   S +   G  V V+LL+ +   K I L+M+  D
Sbjct: 175 VHISRVSDGFVKDISSLFTVGQEVSVRLLEANKETKRISLTMREGD 220


>gi|281491395|ref|YP_003353375.1| general stress protein/S1-type RNA-binding domain-containing
           protein [Lactococcus lactis subsp. lactis KF147]
 gi|281375129|gb|ADA64645.1| General stress protein with S1-type RNA-binding domain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG---------ARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFYLDNSSNKEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             V  +++D D+   KI LS++ +++N
Sbjct: 66  QKVMAQIIDIDEYNSKISLSIRSLEKN 92


>gi|253827272|ref|ZP_04870157.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491]
 gi|253510678|gb|EES89337.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491]
          Length = 558

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G + K+  FG FV   G  +GLVH +++S +     S + KEGD V VK+L +D D+ ++
Sbjct: 208 GTIKKITSFGMFVDVEGV-EGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKRL 266

Query: 684 KLSMK 688
            LS+K
Sbjct: 267 ALSIK 271



 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + DFGAF+   G  DGL+H       +  K  D++K GD + VK+   D ++
Sbjct: 377 ILKGSVATLTDFGAFIKLDGI-DGLLHNEDAYWNKNEKCKDLMKIGDEIEVKIAKIDREK 435

Query: 681 GKIKLSMK 688
            +I L+ K
Sbjct: 436 ERISLTRK 443


>gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays]
 gi|219887423|gb|ACL54086.1| unknown [Zea mays]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 26/192 (13%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYV 363
           M++   R DGR+   +R  +     L R HGS+ + +GDT  +  V     GTR+ E   
Sbjct: 1   MMEGGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPE 60

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +          +   + P  TG++ R      +E  +    +R +  +   T     T 
Sbjct: 61  KA---------SIEVVWKP-KTGQIGR------QEREYEMTLKRTLQSICLLTVHPNTTT 104

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +V ++   DGS     +  S  AL  AG+P+      I+ G++ +G   +++ D S  E
Sbjct: 105 SVVLQVVGDDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNG---VVILDTSRAE 161

Query: 484 DH----LGHMDF 491
           +       H+ F
Sbjct: 162 EQQARSFAHLVF 173


>gi|91214538|ref|ZP_01251511.1| 30S ribosomal protein S1 [Psychroflexus torquis ATCC 700755]
 gi|91186965|gb|EAS73335.1| 30S ribosomal protein S1 [Psychroflexus torquis ATCC 700755]
          Length = 609

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 215 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLVHITDLS 273

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   ++VV+    + V +LDFD D+ +I+L +K
Sbjct: 274 WSRINHPNEVVELDQKLNVVILDFDEDKTRIQLGLK 309



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           GQV    +FG FV      DGL++IS LS T+++   S+  K GD + V +L+ D  G+ 
Sbjct: 418 GQVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCKVGDQLNVVVLELDVDGR- 476

Query: 684 KLSM 687
           KLS+
Sbjct: 477 KLSL 480



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           ++  +  G V  + D+GAF+      +GL+H+S++S +  +    D VK GD V  K+L 
Sbjct: 324 KIGDVVNGTVTVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFVKVGDKVEAKILT 383

Query: 677 FD--DRGKIKLSMK 688
            D  DR K+ L +K
Sbjct: 384 LDREDR-KMSLGIK 396


>gi|145588687|ref|YP_001155284.1| 30S ribosomal protein S1 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047093|gb|ABP33720.1| SSU ribosomal protein S1P [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 557

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E     E  + ++++ E   +  G V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVLSRRAVVEASQGEERAKLMSNLKE-GAVVTGLVKNITDYGAFVDLGGI-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           L+  RV   S+++  G  V  K+L FD ++ ++ L +K
Sbjct: 223 LAWRRVRHPSEMLTVGQEVTAKILKFDQEKNRVSLGVK 260



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T V +   +  G V  V   GA +H     +  +  S++ST+RV    +V+KEGD+V   
Sbjct: 445 TSVSDKGSLVTGTVKAVDAKGATIHLADEVEAYLRASEISTDRVEDARNVLKEGDSVTAM 504

Query: 674 LLDFDDRGK-IKLSMKVVDQN 693
           +++ D + + I LS+K  D +
Sbjct: 505 IINIDRKSRVINLSIKAKDSS 525



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +    S     G  V V +LD D D+ +
Sbjct: 282 GKVTNLTDYGAFVEIESGIEGLVHVSEMDWTNKNVAPSKATALGTEVEVMVLDIDEDKRR 341

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 342 ISLGIKQCKAN 352



 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS  E   +     K+GD V   +L  D ++ +
Sbjct: 369 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWNEPGEEAVKKYKKGDEVEATVLAIDVEKER 428

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 429 ISLGIK---QLSGDPF 441


>gi|167037582|ref|YP_001665160.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856416|gb|ABY94824.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
          Length = 365

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 594 KIASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           KI  S    ++  RE ++   ++++ E   I +G+V  ++D GAFV   G  DG + +S+
Sbjct: 162 KIVGSQKEVLKLEREKVKKALLSNLKE-GDIVEGKVKNIIDKGAFVD-IGGFDGFIPLSE 219

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           +S ER+    +V+  GD V V +L+ D++  KI LS++ V
Sbjct: 220 ISWERIKNPREVLGIGDKVSVYILNVDEKKEKITLSLRKV 259


>gi|239636520|ref|ZP_04677522.1| general stress protein 13 [Staphylococcus warneri L37603]
 gi|239597875|gb|EEQ80370.1| general stress protein 13 [Staphylococcus warneri L37603]
          Length = 126

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  D+ GK+
Sbjct: 12  KVRVTGIQPYGAFVEAPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDEEGKL 71

Query: 684 KLSMK 688
            LS+K
Sbjct: 72  NLSLK 76


>gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
 gi|226736897|sp|B3PGE8|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR+ + +R I       +   GS L   GDT+ I   ++           L G  + 
Sbjct: 3   RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASV----VAGVPSFLRGQGQG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +TG     E +R G    R +   RL  R++   +   A    T+ +  
Sbjct: 59  WLTAEYGMLPRSTGTRMDREAAR-GKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+ + +A +++G+ +     + +
Sbjct: 118 DVIQADGGTRTASITGAWVALADAVAWLKAEGRVTDEPLKRAIASVSVGIYQG----VPV 173

Query: 477 SDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D+   ED     D  V  G D GI  +Q   +    +E      L  AK+G
Sbjct: 174 LDLDYPEDSAADTDMNVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQG 225


>gi|114328686|ref|YP_745843.1| 30S ribosomal protein S1 [Granulibacter bethesdensis CGDNIH1]
 gi|114316860|gb|ABI62920.1| SSU ribosomal protein S1P [Granulibacter bethesdensis CGDNIH1]
          Length = 571

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ ++ G TV V+++ F+ D 
Sbjct: 205 ILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWKRINHPSEALQIGQTVKVQVIRFNSDT 263

Query: 681 GKIKLSMK 688
            +I L MK
Sbjct: 264 QRISLGMK 271


>gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680]
 gi|61216038|sp|Q82D17|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R I+ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYSMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V      
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGG---- 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           + L D+  +ED     D  V  T  G
Sbjct: 173 VPLLDLCYEEDVKADTDMNVVCTGDG 198


>gi|126662739|ref|ZP_01733738.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteria bacterium BAL38]
 gi|126626118|gb|EAZ96807.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteria bacterium BAL38]
          Length = 712

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +RSI D+ +   I  G V  +  FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 633 VRSIKDL-KTGMILPGIVNNITAFGCFVDVGIKESGLVHISQLKEGFVSDVNEVVKMHQH 691

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+++ D+ R +I+L+M
Sbjct: 692 VQVKVVEVDEARKRIQLTM 710


>gi|85859450|ref|YP_461652.1| ribonuclease PH [Syntrophus aciditrophicus SB]
 gi|123516627|sp|Q2LTS3|RNPH_SYNAS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85722541|gb|ABC77484.1| ribonuclease PH [Syntrophus aciditrophicus SB]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R++      L+   GS L   GDT+ I    L    + +    L  + +
Sbjct: 1   MRKNRRHEDELREVKITRNYLKHPQGSVLIEVGDTKVICTAAL----EAKVPPFLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT E ++     R  IG       RL  R++  V    +    T+ I 
Sbjct: 57  GWLTAEYAMLPMATQERNQR-ESVRGHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYID 115

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ GS +AL+D             +PI   V+ +++G+V    D  +
Sbjct: 116 CDVIQADGGTRTASITGSFVALVDLFRKMKEKGICETMPIRDYVSAVSVGVV----DGQL 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+  +ED    +D  V  T +G
Sbjct: 172 LLDLEYEEDSRADVDMNVVMTGAG 195


>gi|319898285|ref|YP_004158378.1| 30S ribosomal protein S1 [Bartonella clarridgeiae 73]
 gi|319402249|emb|CBI75782.1| 30S ribosomal protein S1 [Bartonella clarridgeiae 73]
          Length = 566

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A + +  + ++ E N+I +G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRTVLEENRAEQRLEIVQNLEE-NQIVEGIVKNITDYGAFVDLGGI-DGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ------NTGKPI 698
            ++  R+   S+++  G  + V+++  + +  +I L MK ++       NT  PI
Sbjct: 228 DMAWRRINHPSEILTIGQNIKVQIIRINQETHRISLGMKQLENDPWDSINTKYPI 282



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN    G+V    +FG F+   G  DG+VH+S L   R   +  D   +GDTV   +LD 
Sbjct: 369 VNSKITGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDTVQAVVLDV 428

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 429 DVEKERISLGIK 440


>gi|317474257|ref|ZP_07933533.1| hypothetical protein HMPREF1016_00512 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909567|gb|EFV31245.1| hypothetical protein HMPREF1016_00512 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 711

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+  +     G V  + +FGAFV      +GL+H+SQL+ + V+  +++V     
Sbjct: 628 VRTIDDL-RIGMELPGIVSNITNFGAFVDIGIKENGLIHLSQLAQKYVSDPNEIVSIHQQ 686

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V VK+L  D +R +I+L+M
Sbjct: 687 VRVKILGVDTERKRIQLTM 705


>gi|313632144|gb|EFR99228.1| general stress protein 13 [Listeria seeligeri FSL N1-067]
          Length = 117

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDDSTQGLVHISEITHGFVKDIHDFLEVGQVVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVD 691
           D ++ KI LS++  +
Sbjct: 65  DEEKNKISLSIRATE 79


>gi|223039564|ref|ZP_03609851.1| S1 RNA binding domain protein [Campylobacter rectus RM3267]
 gi|222879135|gb|EEF14229.1| S1 RNA binding domain protein [Campylobacter rectus RM3267]
          Length = 556

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  V +FGAFV   GA +GL+H    S +R  K  D+ K GD + VK++  D + 
Sbjct: 377 VTKGVVTSVTNFGAFVR-IGAVEGLLHNEDASWDRNDKCKDLFKIGDEIEVKIIKIDANE 435

Query: 681 GKIKLSMKVVDQ 692
            KI LS K + Q
Sbjct: 436 QKISLSQKDLKQ 447



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      E  +    +I+ V E   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKLLDEDRKRKREAISAVAENTDVIEGVVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           GLVH S++S +       + KEGD V V+++ +D+  K + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGSIYKEGDKVLVRVIKYDNEKKHLSLSIK 271


>gi|17988058|ref|NP_540692.1| ribonuclease PH [Brucella melitensis bv. 1 str. 16M]
 gi|225851706|ref|YP_002731939.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|256045962|ref|ZP_05448834.1| ribonuclease PH [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112675|ref|ZP_05453596.1| ribonuclease PH [Brucella melitensis bv. 3 str. Ether]
 gi|256264784|ref|ZP_05467316.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563245|ref|ZP_05833731.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992375|ref|ZP_06104932.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994118|ref|ZP_06106675.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|21759402|sp|Q8YEV2|RNPH_BRUME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808582|sp|C0RGM7|RNPH_BRUMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17983807|gb|AAL52956.1| ribonuclease ph [Brucella melitensis bv. 1 str. 16M]
 gi|225640071|gb|ACN99984.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|260153261|gb|EEW88353.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|262765099|gb|EEZ11020.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263003441|gb|EEZ15734.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095193|gb|EEZ18862.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408195|gb|ADZ65260.1| ribonuclease PH [Brucella melitensis M28]
 gi|326537910|gb|ADZ86125.1| ribonuclease PH [Brucella melitensis M5-90]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R IS + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A + G  +AL + 
Sbjct: 117 DVIQADGGTRTAAITGGWVALHEC 140


>gi|88803478|ref|ZP_01119004.1| 30S ribosomal protein S1 [Polaribacter irgensii 23-P]
 gi|88781044|gb|EAR12223.1| 30S ribosomal protein S1 [Polaribacter irgensii 23-P]
          Length = 607

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA  E+  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 210 VVVSHKALIEADIELQKKEIIGQLEKGQVLEGIVKNITSYGVFVDLGGV-DGLVHITDLS 268

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   ++VV+    + V +LDFDD + +I+L +K
Sbjct: 269 WSRINHPNEVVELDQKLNVVILDFDDNKSRIQLGLK 304



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           ++ D  +V     G+VV + D+GAFV      +GL+H+S++S +  +    D VK GD V
Sbjct: 313 ALNDTLKVGDKVTGEVVVIADYGAFVEVEQGVEGLIHVSEMSWSTHLRSAQDFVKVGDKV 372

Query: 671 WVKL--LDFDDRGKIKLSMK 688
             ++  LD DDR K+ L +K
Sbjct: 373 EAQVLTLDRDDR-KMSLGIK 391



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           IT    V   + G V    +FG FV      DGLV+IS LS T+++   SD V  GD + 
Sbjct: 401 ITTKYPVGSTHTGTVRNYTNFGVFVELEEGIDGLVYISDLSWTKKIKHPSDFVTVGDKLE 460

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           V++L+ D +  K+ L  K    N
Sbjct: 461 VQVLELDVENRKLNLGHKQTQDN 483


>gi|84684654|ref|ZP_01012555.1| ribonuclease PH [Maritimibacter alkaliphilus HTCC2654]
 gi|84667633|gb|EAQ14102.1| ribonuclease PH [Rhodobacterales bacterium HTCC2654]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+ + +R IS + G+ +   GS L   GDT  +   +L    +E+    L  T  
Sbjct: 14  MRPSGRNVDELRPISIETGVTKHAEGSCLIKVGDTHVLCTASL----EERVPPWLRNTGM 69

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A + ++ G      RL  R++   + + A     + +  
Sbjct: 70  GWVTAEYGMLPRSTSSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDC 129

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 130 DVIQADGGTRCASITGGWVALRLAVQKLMKAGDIVSDPLIDPVAAVSCGI 179


>gi|209966225|ref|YP_002299140.1| ribonuclease PH [Rhodospirillum centenum SW]
 gi|209959691|gb|ACJ00328.1| ribonuclease PH [Rhodospirillum centenum SW]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 19/171 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +S +  + +   GS L   GDT  +   ++    +++    L G  + 
Sbjct: 3   RPSGRSLDQMRPVSLETNVSKHAEGSCLVRFGDTHVLCTASV----EDRVPPFLRGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E +   A   R+ G      RL  R++  V    A    T++I  +
Sbjct: 59  WVTAEYGMLPRATAERTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVK 468
           + ++DG +  A + GS +AL  A             P++  VA ++ GL +
Sbjct: 119 VLQADGGTRTAAITGSYVALALAFRHLTSIGFLKAQPLTDSVAAVSCGLYQ 169


>gi|150008009|ref|YP_001302752.1| RNA-binding protein [Parabacteroides distasonis ATCC 8503]
 gi|149936433|gb|ABR43130.1| putative RNA binding protein with S1 RNA-binding domain
           [Parabacteroides distasonis ATCC 8503]
          Length = 708

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV      +GLVHIS+L+   V+  + VV     
Sbjct: 628 VKTIEDLKE-GQVLPGIVNNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK+L  D  R +++LSMK
Sbjct: 687 VKVKVLSVDLSRKRVQLSMK 706


>gi|39996302|ref|NP_952253.1| 30S ribosomal protein S1 [Geobacter sulfurreducens PCA]
 gi|39983182|gb|AAR34576.1| ribosomal protein S1 [Geobacter sulfurreducens PCA]
 gi|298505312|gb|ADI84035.1| RNA-binding S1 domain protein [Geobacter sulfurreducens KN400]
          Length = 402

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G V ++  FGAFV      DGL+HIS+L   +R+A   +V+KEGD V V  ++  DR 
Sbjct: 292 HTGTVARLAPFGAFVTLAPGIDGLIHISKLGAGKRIAHPREVLKEGDAVEV-TVEGVDRE 350

Query: 682 KIKLSM 687
             +LS+
Sbjct: 351 SRRLSL 356



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  R+   ++ D  +      G V ++M FGAFV   G  +GL+ IS+    RV +  DV
Sbjct: 188 EEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDIGGV-EGLIPISEAGWSRVKEIGDV 246

Query: 664 VKEGD--TVWVKLLDFDDRGKIKLSMKVV 690
           +  G+  T  VK +D+++  KI LS++ V
Sbjct: 247 LSVGEQVTALVKRIDWENN-KISLSLRDV 274


>gi|299782837|gb|ADJ40835.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 725

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V  V+DFGAF+      DGLVH+S+++ +       ++  GD  TVWV  +D   R 
Sbjct: 652 EGTVRNVVDFGAFIDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVTVWVHAVD-KQRD 710

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 711 RIQLTM 716


>gi|237746992|ref|ZP_04577472.1| small subunit ribosomal protein S1 [Oxalobacter formigenes HOxBLS]
 gi|229378343|gb|EEO28434.1| small subunit ribosomal protein S1 [Oxalobacter formigenes HOxBLS]
          Length = 569

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VVK GD V V +L
Sbjct: 285 PQGTRLF-GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVKLGDEVEVMVL 343

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 344 EIDEERRRISLGMKQCKPN 362



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAF+   G  DGL+HI+ L+  RV   S+++  G  +  K+L +D ++
Sbjct: 204 IVNGVVKNITDYGAFIDLGGI-DGLLHITDLAWRRVRHPSEMLTVGQEITAKVLKYDQEK 262

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 263 NRVSLGVK 270


>gi|160902641|ref|YP_001568222.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360285|gb|ABX31899.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 720

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G++  + DFGAFV      +GL+H S L+   VA  +D+V+  D V V++++ D
Sbjct: 652 GKITNITDFGAFVDLGIKENGLIHKSNLAERFVAHPTDIVQINDIVEVEIINID 705


>gi|254439955|ref|ZP_05053449.1| ribonuclease PH [Octadecabacter antarcticus 307]
 gi|198255401|gb|EDY79715.1| ribonuclease PH [Octadecabacter antarcticus 307]
          Length = 235

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 30/175 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R IS ++ + +   GS L   GDTQ +   ++    DE+    L  +  
Sbjct: 1   MRPSGRTIDGMRPISIEIDVTRHAEGSCLIKCGDTQVLCTASI----DERVPSFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG---------RLARRAIHPVLPQTAQFPYT 422
                 Y  LP AT   +RM    RRE  +G         RL  R++   + + A     
Sbjct: 57  GWVTAEYGMLPRATN--TRM----RREAKNGQSGRTQEIQRLIGRSLRAGIDRVALGERQ 110

Query: 423 LRIVSEITESDGSSSMATVCGSSLA-------LMDAGVPISK----PVAGIAMGL 466
           + I  ++ ++DG +  A++ G  +A       LM+AG  IS     PVA ++ G+
Sbjct: 111 IVIDCDVIQADGGTRCASITGGWVALKLAVQKLMNAGDVISDPLLIPVAAVSCGI 165


>gi|330684224|gb|EGG95966.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU121]
          Length = 77

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  D+ GK+
Sbjct: 12  KVRVTGIQPYGAFVEAPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDEEGKL 71

Query: 684 KLSMK 688
            LS+K
Sbjct: 72  NLSLK 76


>gi|325290671|ref|YP_004266852.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
 gi|324966072|gb|ADY56851.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+  R+++ +R +       +   GS L   G T  +   ++    +++    L G  + 
Sbjct: 3   RIAERNNQELRPVRITRRYTEIPEGSVLIEIGKTMVLCTASI----EDRVPPFLKGAGKG 58

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP ATG      S  G  S R +   RL  RA+  V+  +     T+ +  +
Sbjct: 59  WITAEYSMLPRATGVRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------AGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL D       AG+    PI+  +A +++G V+   ++++  
Sbjct: 119 VLQADGGTRTAAITGAYVALHDAVSFLLGAGLLKTNPITDSLAAVSVGKVR--GEYLL-- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++ +ED    +D  V  T SG
Sbjct: 175 DLAYEEDSKAEVDMNVVMTGSG 196


>gi|313125280|ref|YP_004035544.1| DNA-directed RNA polymerase, subunit e' [Halogeometricum
           borinquense DSM 11551]
 gi|312291645|gb|ADQ66105.1| DNA-directed RNA polymerase, subunit E' [Halogeometricum
           borinquense DSM 11551]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++T  P++ ++  G+VV+V++FGAFV   G  DGL+H+SQ+S E +A   +  +   T  
Sbjct: 74  AVTFDPDMQEVIDGEVVEVVEFGAFVGI-GPVDGLLHVSQISDEYLAYDGENQQLASTES 132

Query: 672 VKLLDFDDRGKIKLSMKVVDQNT 694
            + L   D  ++++  K +D+  
Sbjct: 133 NRTLAVGDSVRVRVVTKSIDERN 155


>gi|171463929|ref|YP_001798042.1| ribosomal protein S1 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193467|gb|ACB44428.1| ribosomal protein S1 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 557

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E     E  + ++++ E   +  G V  + D+GAFV   G  DGL+HI+ 
Sbjct: 165 NVVLSRRAVVEASQGEERAKLMSNLKE-GAVVTGLVKNITDYGAFVDLGGI-DGLLHITD 222

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           L+  RV   S+++  G  V  K+L FD ++ ++ L +K
Sbjct: 223 LAWRRVRHPSEMLTVGQEVTAKILKFDQEKNRVSLGVK 260



 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T V +   +  G V  V   GA +H     +  +  S++ST+RV    +V+KEGD+V   
Sbjct: 445 TSVSDKGSLVTGTVKAVDAKGATIHLADEVEAYLRASEISTDRVEDARNVLKEGDSVTAM 504

Query: 674 LLDFDDRGK-IKLSMKVVDQN 693
           +++ D + + I LS+K  D +
Sbjct: 505 IINIDRKSRVINLSIKAKDSS 525



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++  T +    S     G  V V +LD D D+ +
Sbjct: 282 GKVTNLTDYGAFVEIESGIEGLVHVSEMDWTNKNVAPSKATALGTEVEVMVLDIDEDKRR 341

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 342 ISLGIKQCKAN 352



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S LS  E   +     K+GD V   +L  D ++ +
Sbjct: 369 GAIKSITDFGVFIGLPGGIDGLVHLSDLSWNEPGEEAVKKYKKGDEVEATVLAIDVEKER 428

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K   Q +G P 
Sbjct: 429 ISLGIK---QLSGDPF 441


>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
           2088]
 gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
           2088]
          Length = 270

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 18/152 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV--TLGTREDEQYVDSLSGTQ 370
           R+DGR     RDI  + G++ +  GS+    GDTQ +V V  T+G    E + D+     
Sbjct: 26  RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIG----EPFPDN---PN 78

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI--------HPVLPQTAQFPYT 422
               + +   LP A+      G P  R I   R+  R I          +     +  + 
Sbjct: 79  LGIIITNSELLPMASPTFEP-GPPDERSIELARVVDRCIRESNMLDLEKLCIIEGEKVWI 137

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
           L I   I + DG+   A+V G+  ALMD  +P
Sbjct: 138 LFIDLHILDYDGNLFDASVLGAVAALMDTKLP 169


>gi|288560738|ref|YP_003424224.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
           ruminantium M1]
 gi|288543448|gb|ADC47332.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
           ruminantium M1]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 16/95 (16%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER----------VAKTS-DVVK 665
           PE  ++ +G+V+ + +FGAFV   G  DGLVH+SQ++ +           +AK S  ++ 
Sbjct: 76  PEQQEVVEGEVIDIAEFGAFVR-IGPMDGLVHVSQVTDDYINYDPRNASLIAKESKKILT 134

Query: 666 EGDTVWVKLLDFDDRGKI----KLSMKVVDQNTGK 696
           EGD V  +++    +GK     K+ + +   N GK
Sbjct: 135 EGDRVRARIVTLSLKGKTVQESKIGLTMRQPNLGK 169


>gi|260582728|ref|ZP_05850515.1| transcriptional accessory protein [Haemophilus influenzae NT127]
 gi|260094178|gb|EEW78079.1| transcriptional accessory protein [Haemophilus influenzae NT127]
          Length = 770

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 20/135 (14%)

Query: 548 EFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
           E  P VE I+      I++++G  G     +V Q  AK  ID+   +        E+E  
Sbjct: 571 EAYPVVEKILQATAQSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKP 625

Query: 607 -------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                         E +  ITD+ +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 626 GRDPRGEFKTAVFAEGVEEITDL-KSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGD 668
            + V     VVK G+
Sbjct: 685 DKFVEDPHQVVKTGN 699


>gi|261823588|ref|YP_003261694.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
 gi|261607601|gb|ACX90087.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVAKGKLKKNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 23/200 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  L  +TGE ++  A   ++ G      RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G++++L+DA           G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQTDGGTRTASITGATVSLIDALAVLKKRVALKGNPLKQIVAAVSVGIYQG----VPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTD 497
           D+   ED     D  V  TD
Sbjct: 175 DLDYLEDSAAESDLNVVMTD 194


>gi|308070476|ref|YP_003872081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681]
 gi|305859755|gb|ADM71543.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Paenibacillus polymyxa E681]
          Length = 253

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR+ + +R +    G+ +   GS     G+T+ I   T+    +E+    + G  + 
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATV----EERVPPFMKGQGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP AT      E +R G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 59  WVTAEYSMLPRATHSRNQREAAR-GKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ GS +AL  A             PI+  +A +++G+V +      L
Sbjct: 118 DVIQADGGTRTTSITGSFVALAIAVNKIATQHKLPVFPITDFLASVSVGVVGEK----AL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++ +ED    +D  +  T SG
Sbjct: 174 LDLNYEEDSKAKVDMNLVMTGSG 196


>gi|237742908|ref|ZP_04573389.1| LytB protein [Fusobacterium sp. 4_1_13]
 gi|229430556|gb|EEO40768.1| LytB protein [Fusobacterium sp. 4_1_13]
          Length = 827

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHP 622

Query: 679 DRGKIKLSMK 688
           +  K+KL +K
Sbjct: 623 ENRKLKLGIK 632



 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKL 542

Query: 686 SMKVVDQN 693
           S+K ++++
Sbjct: 543 SIKKLEED 550


>gi|300120808|emb|CBK21050.2| unnamed protein product [Blastocystis hominis]
          Length = 245

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 19/97 (19%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +PE+N I+K  +   + FG+F      A DGL++ S    +  A      +EG  VWVK+
Sbjct: 124 IPEINNIHKAVIKSNLAFGSFARIPEYAFDGLIYTSNYIPDHPAP-----REGQEVWVKV 178

Query: 675 LD-FDDRGKIK------------LSMKVVDQNTGKPI 698
           L  F+   K+K            LSMK  +Q TGK +
Sbjct: 179 LRVFESENKVKLVMGCGFFDRMSLSMKECNQQTGKDL 215


>gi|157149261|ref|YP_001456580.1| ribonuclease PH [Citrobacter koseri ATCC BAA-895]
 gi|166228276|sp|A8ARN1|RNPH_CITK8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157086466|gb|ABV16144.1| hypothetical protein CKO_05101 [Citrobacter koseri ATCC BAA-895]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVIQADGGTRTASISGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|294673916|ref|YP_003574532.1| 30S ribosomal protein S1 [Prevotella ruminicola 23]
 gi|294472255|gb|ADE81644.1| ribosomal protein S1 [Prevotella ruminicola 23]
          Length = 592

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE+EA +   + I    E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV   
Sbjct: 198 AELEAQK---KEIIGKLEKGQILEGTVKNITSYGVFVDLGGV-DGLIHITDLSWGRVDDP 253

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             VV+    + V +LDFDD + +I L +K
Sbjct: 254 HKVVELDQKINVVILDFDDEKRRIALGLK 282



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    + +K GD V   +L  D D  
Sbjct: 303 KGKVVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDDVEAVILTLDRDER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 363 KMSLGIKQLREDPWEAI 379



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  +V    +FG FV      DGL+HIS LS T++V   S+  + G+ + V +LD D   
Sbjct: 389 HTAKVRNFTNFGVFVELEEGVDGLIHISDLSWTKKVKHPSEFTQVGEQIEVVVLDIDKEN 448

Query: 682 -KIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 449 RRLSLGHKQLEEN 461


>gi|256846880|ref|ZP_05552334.1| ribosomal protein S1 [Fusobacterium sp. 3_1_36A2]
 gi|256717678|gb|EEU31237.1| ribosomal protein S1 [Fusobacterium sp. 3_1_36A2]
          Length = 827

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHP 622

Query: 679 DRGKIKLSMK 688
           +  K+KL +K
Sbjct: 623 ENRKLKLGIK 632



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKL 542

Query: 686 SMKVVDQN 693
           S+K ++++
Sbjct: 543 SIKKLEED 550


>gi|325291761|ref|YP_004277625.1| ribonuclease PH [Agrobacterium sp. H13-3]
 gi|325059614|gb|ADY63305.1| ribonuclease PH [Agrobacterium sp. H13-3]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +V  +L    +E+    L  + +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +  A + ++ G      RL  R++  V+   A     + I  
Sbjct: 57  GWVTAEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL D 
Sbjct: 117 DVIQADGGTRTASITGAWIALHDC 140


>gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +RDI+   G   +  GS+L   G+T+ +   +      E     L G   
Sbjct: 3   LRADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASF----TEGVPRWLKGQGT 58

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  S R     RL  R++  V+   A    T+ +  
Sbjct: 59  GWVTAEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL +A       G+       ++  VA I++G++ DG   +
Sbjct: 119 DVLQADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGII-DGTPML 177

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+  +ED     D  V  T SG
Sbjct: 178 ---DLPYEEDVRAETDMNVVVTGSG 199


>gi|257125163|ref|YP_003163277.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049102|gb|ACV38286.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + I+ S L ++E  +    S+     +  I  G+V +V DFG  +   GA  G +HIS+
Sbjct: 148 NITISRSDLIKLEEEK-YFESVN----IGDIVTGKVKEVFDFGIILD-LGAASGFIHISE 201

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +S E+V   ++  K+GD +  K+++ D ++ ++KLS+K
Sbjct: 202 VSWEQVDNLTEKYKKGDEISAKIIEKDAEKNRLKLSIK 239



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           + +V DFG  +      DGL+H+S LS +R +  +   K GD +  K++DF+D + +I L
Sbjct: 348 ITEVFDFGLLISLEKDIDGLLHVSDLSYKRESNLTSKYKAGDLIKFKIVDFNDEKNRITL 407

Query: 686 SMKVV 690
           S K +
Sbjct: 408 SAKAL 412


>gi|167763615|ref|ZP_02435742.1| hypothetical protein BACSTE_01990 [Bacteroides stercoris ATCC
           43183]
 gi|167698909|gb|EDS15488.1| hypothetical protein BACSTE_01990 [Bacteroides stercoris ATCC
           43183]
          Length = 710

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+  +     G V  + +FGAFV      +GL+H+SQL+ + V+  +++V     
Sbjct: 628 VRTIDDL-RIGMELPGIVGNITNFGAFVDIGIKENGLIHLSQLAQKYVSNPNEIVSIHQQ 686

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V VK+L  D +R +I+L+M
Sbjct: 687 VRVKVLSVDTERKRIQLTM 705


>gi|320104703|ref|YP_004180294.1| Tex-like protein [Isosphaera pallida ATCC 43644]
 gi|319751985|gb|ADV63745.1| Tex-like protein [Isosphaera pallida ATCC 43644]
          Length = 1315

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624  KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
            KG V+ V+DFGAFV       GLVHISQL+   +    D   V +  TVWV  +D  DR 
Sbjct: 1032 KGTVLNVVDFGAFVDIGLKDSGLVHISQLANRYIKSPHDVVSVGDVVTVWVMAVDH-DRK 1090

Query: 682  KIKLSM 687
            ++ L+M
Sbjct: 1091 RVSLTM 1096


>gi|294784220|ref|ZP_06749515.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 3_1_27]
 gi|294488086|gb|EFG35437.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 3_1_27]
          Length = 827

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHP 622

Query: 679 DRGKIKLSMK 688
           +  K+KL +K
Sbjct: 623 ENRKLKLGIK 632



 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKL 542

Query: 686 SMKVVDQN 693
           S+K ++++
Sbjct: 543 SIKKLEED 550


>gi|154492127|ref|ZP_02031753.1| hypothetical protein PARMER_01758 [Parabacteroides merdae ATCC
           43184]
 gi|154087352|gb|EDN86397.1| hypothetical protein PARMER_01758 [Parabacteroides merdae ATCC
           43184]
          Length = 742

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV      +GLVHIS+L+   ++  + VV     
Sbjct: 657 VKTIEDLKE-GQVLPGIVTNITNFGCFVDVGIKENGLVHISELADRFISDPTQVVSIHQH 715

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK+L  D  R +++LSMK +++
Sbjct: 716 VKVKVLSVDLVRKRVQLSMKGIEE 739


>gi|218130719|ref|ZP_03459523.1| hypothetical protein BACEGG_02310 [Bacteroides eggerthii DSM 20697]
 gi|217987063|gb|EEC53394.1| hypothetical protein BACEGG_02310 [Bacteroides eggerthii DSM 20697]
          Length = 711

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+  +     G V  + +FGAFV      +GL+H+SQL+ + V+  +++V     
Sbjct: 628 VRTIDDL-RIGMELPGIVSNITNFGAFVDIGIKENGLIHLSQLAQKYVSDPNEIVSIHQQ 686

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V VK+L  D +R +I+L+M
Sbjct: 687 VRVKILGVDTERKRIQLTM 705


>gi|218551172|ref|YP_002384963.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218560715|ref|YP_002393628.1| ribonuclease PH [Escherichia coli S88]
 gi|218691927|ref|YP_002400139.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218702410|ref|YP_002410039.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218707277|ref|YP_002414796.1| ribonuclease PH [Escherichia coli UMN026]
 gi|26110719|gb|AAN82903.1|AE016769_18 Ribonuclease PH [Escherichia coli CFT073]
 gi|91074734|gb|ABE09615.1| ribonuclease PH [Escherichia coli UTI89]
 gi|218358713|emb|CAQ91369.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218367484|emb|CAR05266.1| ribonuclease PH [Escherichia coli S88]
 gi|218372396|emb|CAR20270.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218429491|emb|CAR10314.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218434374|emb|CAR15299.1| ribonuclease PH [Escherichia coli UMN026]
          Length = 246

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 23/206 (11%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G
Sbjct: 6   DFNMRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKG 61

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLR 424
             +      Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ 
Sbjct: 62  QGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTIT 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+  
Sbjct: 122 LDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE-- 178

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             + D+   ED     D  V  T+ G
Sbjct: 179 -AVCDLEYVEDSAAETDMNVVMTEDG 203


>gi|254482749|ref|ZP_05095987.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
 gi|214037108|gb|EEB77777.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
          Length = 240

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  E +RDIS          GS L   G T+ I   ++    +E     L G    
Sbjct: 3   RPSGRTPEQLRDISITRNFTCHAEGSVLVSFGKTKVICTASV----EEGVPRFLRGKGSG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TG  SRMG  + R    GR      L  R++   +        T+ I 
Sbjct: 59  WVTAEYGMLPRSTG--SRMGREASRGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA 451
            ++ ++DG +  A++ G+ +AL+DA
Sbjct: 117 CDVIQADGGTRTASITGALVALVDA 141


>gi|116789895|gb|ABK25430.1| unknown [Picea sitchensis]
          Length = 381

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 622 IYKGQVVKVMDFGAFVHFC---GAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           +++G+V  V  FGAFV+     G    DGLVHIS++S + V    D++K+GD V VK++ 
Sbjct: 187 VFEGRVSSVTKFGAFVNLRFPDGGYYVDGLVHISEVSWDLVRDVRDILKKGDDVRVKVIQ 246

Query: 677 FD-DRGKIKLSMK 688
            + ++ ++  S+K
Sbjct: 247 INVEKSRLAFSIK 259


>gi|160903054|ref|YP_001568635.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360698|gb|ABX32312.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 532

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G V K++ FG  V      +GLVH +++   R  + SD+V  GD V VK+L+ D
Sbjct: 265 IGSIVQGTVTKILPFGFTVKIDEGLEGLVHETEIFWGRKGRISDLVNVGDDVQVKILNID 324

Query: 679 -DRGKIKLSMKVVDQNTGKP 697
            +  KI LS K   Q +G P
Sbjct: 325 KENKKINLSYK---QVSGDP 341


>gi|126179994|ref|YP_001047959.1| translation initiation factor IF-2 subunit alpha [Methanoculleus
           marisnigri JR1]
 gi|125862788|gb|ABN57977.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanoculleus marisnigri JR1]
          Length = 259

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++    V  V DF AFV       R GL+ IS+++   +    D V+EG  V  K+
Sbjct: 7   PEEGELVVCTVADVKDFAAFVTLDEYNERRGLIPISEIARGWIKYIRDFVREGQKVVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L+ D DRG I LS+K V+++
Sbjct: 67  LNVDPDRGHIDLSLKDVNEH 86


>gi|260062463|ref|YP_003195543.1| 30S ribosomal protein S1 [Robiginitalea biformata HTCC2501]
 gi|88784028|gb|EAR15198.1| putative 30S ribosomal protein S1 [Robiginitalea biformata
           HTCC2501]
          Length = 615

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGLVHI+ LS
Sbjct: 217 VVVSHKALIEADIEEQKKEIISQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLVHITDLS 275

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             R+   ++VV     + V +LDFDD + +I+L +K ++++
Sbjct: 276 WSRINHPNEVVDLDQKLNVVILDFDDNKSRIQLGIKQLEKH 316



 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +KG V    +FG FV      DGL++IS LS T+++   S+ V  GD + V++L+ D D 
Sbjct: 418 HKGIVRNYTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFVSVGDEMEVEVLELDVDG 477

Query: 681 GKIKLSMKVVDQN 693
            K+ L  K   +N
Sbjct: 478 RKLSLGHKQTQEN 490



 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW--VKLLDFDDR 680
           KG+VV + D+GAF+      +GL+H+S++S +  +    D V  GD +   V  LD +DR
Sbjct: 332 KGKVVVIADYGAFLEVAEGVEGLIHVSEMSWSTHLRSAQDFVNVGDELEAVVLTLDREDR 391

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 392 -KMSLGLK 398


>gi|293375523|ref|ZP_06621800.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
 gi|292645863|gb|EFF63896.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
          Length = 728

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 624 KGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDR 680
           +G V  V+DFG FV  CG + DGLVH+S++    V    DV   GD   VWV+ +D  +R
Sbjct: 658 QGTVRNVVDFGVFVD-CGVKEDGLVHLSKMKKGFVKHPMDVASVGDIVKVWVESVDL-NR 715

Query: 681 GKIKLSM 687
            ++ L+M
Sbjct: 716 KRLALTM 722


>gi|257456237|ref|ZP_05621434.1| tex protein [Treponema vincentii ATCC 35580]
 gi|257446323|gb|EEV21369.1| tex protein [Treponema vincentii ATCC 35580]
          Length = 800

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  V+DFGAFV        L+HIS++S   V+   + VK GD V  +++  D+ R +
Sbjct: 649 KGKIKNVVDFGAFVDLGIKETALLHISEMSDSFVSDPLEAVKVGDIVECRIIALDEARRR 708

Query: 683 IKLSMK 688
           I LS K
Sbjct: 709 ISLSRK 714


>gi|228473067|ref|ZP_04057824.1| S1 RNA binding domain protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275649|gb|EEK14426.1| S1 RNA binding domain protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++  DV  V  I  G V  +  FG FV       GLVHISQL    V++ S+VVK  + 
Sbjct: 644 VKTFDDV-RVGMILPGIVNNITAFGCFVDIGIKESGLVHISQLKDGYVSEVSEVVKLHEQ 702

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+ + D  R +I LSM
Sbjct: 703 VQVKVTEVDTARKRISLSM 721


>gi|254487308|ref|ZP_05100513.1| ribonuclease PH [Roseobacter sp. GAI101]
 gi|214044177|gb|EEB84815.1| ribonuclease PH [Roseobacter sp. GAI101]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S      +   GS+L   G T  +   T+    +++    + G+  
Sbjct: 1   MRPSGRKLDEMRAVSVDTDFTKHAEGSALIKMGGTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R    MG    R +   RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P++ PVA I+ G+
Sbjct: 117 DVLQADGGTRCASITGGWIALKLAVNKLMKAGDVVNDPLADPVAAISCGI 166


>gi|227115107|ref|ZP_03828763.1| ribonuclease PH [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    SR  A  +   R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   +A +++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVAKGKLKKNPMKGMIAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|212550836|ref|YP_002309153.1| 30S ribosomal protein S1 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549074|dbj|BAG83742.1| 30S ribosomal protein S1 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 612

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AEIE  +   + I    E  +I +G V  + ++G F+   G  DGL+HI+ LS  RV+  
Sbjct: 216 AEIEQQK---KDIISKLEKGQILEGTVKNITNYGVFIDLGGV-DGLIHITDLSWGRVSHP 271

Query: 661 SDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            ++V+  +   V +LDFD+  K I L +K
Sbjct: 272 EEIVQLDEKKNVVILDFDNEKKRIALGLK 300


>gi|325840214|ref|ZP_08166981.1| Tex-like protein N-terminal domain protein [Turicibacter sp. HGF1]
 gi|325490362|gb|EGC92687.1| Tex-like protein N-terminal domain protein [Turicibacter sp. HGF1]
          Length = 728

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 624 KGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDR 680
           +G V  V+DFG FV  CG + DGLVH+S++    V    DV   GD   VWV+ +D  +R
Sbjct: 658 QGTVRNVVDFGVFVD-CGVKEDGLVHLSKMKKGFVKHPMDVASVGDIVKVWVESVDL-NR 715

Query: 681 GKIKLSM 687
            ++ L+M
Sbjct: 716 KRLALTM 722


>gi|16330162|ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
 gi|2500385|sp|P73530|RS1A_SYNY3 RecName: Full=30S ribosomal protein S1 homolog A
 gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
          Length = 328

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 194 EVAQVVVGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDL 252

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 253 DAERGRISLSTKQLEPEPG 271


>gi|254475610|ref|ZP_05088996.1| ribonuclease PH [Ruegeria sp. R11]
 gi|214029853|gb|EEB70688.1| ribonuclease PH [Ruegeria sp. R11]
          Length = 227

 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 19/160 (11%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +S + G  +   GS L   GDT  +   T+    +++    + GT        Y  L
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGTGLGWVTAEYGML 56

Query: 382 PCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT    R    MG    R +   RL  RA+   + + A     + I  ++ ++DG + 
Sbjct: 57  PRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTR 116

Query: 438 MATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
            A++ G  +A       LM AG     P+  PVA ++ G+
Sbjct: 117 CASITGGWVALRLAVNKLMKAGDVTIDPLVDPVAAVSCGI 156


>gi|311746351|ref|ZP_07720136.1| S1 RNA binding domain protein [Algoriphagus sp. PR1]
 gi|311302504|gb|EAZ79567.2| S1 RNA binding domain protein [Algoriphagus sp. PR1]
          Length = 760

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+ A  E + SI D+    K+  G V  +  FGAFV     +DGLVH+S L+   V   +
Sbjct: 633 EVFAFEESVNSIGDLKTGMKL-PGVVTNITAFGAFVDVGVHQDGLVHLSHLADRFVKDPN 691

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++V     V V +++ D  R +I LSMK
Sbjct: 692 EIVTVNQKVQVTVMEVDIPRNRIGLSMK 719


>gi|253690467|ref|YP_003019657.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494124|sp|C6DIC7|RNPH_PECCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|251757045|gb|ACT15121.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR +       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLKLTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVANGKLKKNPMKGMVAAVSVGIV-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 36/208 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYA 69
           RPLKL T    + ++G+VL  +G+T VL     +    R LK GQ    +T  Y      
Sbjct: 12  RPLKL-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLK-GQGQGWVTAEY------ 63

Query: 70  VGKIPGGYLRRESRPTEN------EILISRMIDRSIRPLFSKCYKNETQVII--NVMQHD 121
            G +P     R +R           + I R+I RS+R         E  + +  +V+Q D
Sbjct: 64  -GMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQAD 122

Query: 122 LESSPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
                   S+  A  AL            L   P +G V    V  +NG+ + +    ED
Sbjct: 123 --GGTRTASITGACVALADALNQMVANGKLKKNPMKGMVAAVSVGIVNGEALCDLEYVED 180

Query: 171 QGS-LDLFVSGTQDAVLMVELEANQLSE 197
             +  D+ V  T+D   M+E++     E
Sbjct: 181 SAAETDMNVVMTEDG-RMIEVQGTAEGE 207


>gi|225011942|ref|ZP_03702380.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004445|gb|EEG42417.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-2A]
          Length = 668

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ LS
Sbjct: 273 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITDLS 331

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   S++++    + V +LDFDD + +I+L +K
Sbjct: 332 WSRINHPSEILELDQKLNVVILDFDDNKSRIQLGLK 367



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 54/241 (22%)

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS---------ESRLQ 545
           GT   IT+  + + +GG+   I +  L  ++      + E+ + L+         +SR+Q
Sbjct: 304 GTVKNITSYGVFIDLGGVDGLIHITDLSWSRINHPSEILELDQKLNVVILDFDDNKSRIQ 363

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG---IVEQTGAKVNIDD--DGTVKIASSSL 600
           LG      ++   P D I   +  G KV +G   ++   GA V I++  +G V ++  S 
Sbjct: 364 LG----LKQLSKHPWDAISETLKEGEKV-KGKVVVIADYGAFVEIEEGVEGLVHVSEMSW 418

Query: 601 A--------------EIEA--------AREM---IRSITDVP--------EVNKIYKGQV 627
           +              E+EA        +R+M   I+ IT  P         +   + G V
Sbjct: 419 STHLRSAQDFVKVGDEVEAVILSIDRESRKMSLGIKQITPDPWTDITSKYPIGSKHSGLV 478

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
               +FG F+      DGLV+IS LS T++V   S+V+  GD + V +L+ D  G+ KLS
Sbjct: 479 RNFTNFGVFIELEEGIDGLVYISDLSWTKKVKHPSEVLALGDKIDVIVLELDVEGR-KLS 537

Query: 687 M 687
           +
Sbjct: 538 L 538


>gi|260495299|ref|ZP_05815426.1| transcriptional accessory protein [Fusobacterium sp. 3_1_33]
 gi|260197077|gb|EEW94597.1| transcriptional accessory protein [Fusobacterium sp. 3_1_33]
          Length = 722

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + VK+ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGR 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VGLTRK 719


>gi|163756082|ref|ZP_02163198.1| 30S ribosomal protein S1 [Kordia algicida OT-1]
 gi|161323956|gb|EDP95289.1| 30S ribosomal protein S1 [Kordia algicida OT-1]
          Length = 591

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ LS
Sbjct: 199 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLIHITDLS 257

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   ++VV+    + V +LDFDD + +I+L +K
Sbjct: 258 WSRINHPNEVVELDQKLNVVILDFDDNKSRIQLGLK 293



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G V    +FG FV      DGL++IS LS T++V   S+ V  GD + V +L+ D  G
Sbjct: 400 HTGTVRNFTNFGVFVELEEGIDGLIYISDLSWTKKVKHPSEFVTVGDKLEVLVLELDVEG 459

Query: 682 KIKLSM 687
           + KLS+
Sbjct: 460 R-KLSL 464



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DRGKIKLS 686
           + D+GAF+      +GL+H+S++S +  +    D VK GD V  K+L  D  DR K+ L 
Sbjct: 320 IADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVKVGDEVEAKILTLDREDR-KMSLG 378

Query: 687 MK 688
           +K
Sbjct: 379 IK 380


>gi|86142704|ref|ZP_01061143.1| 30S ribosomal protein S1 [Leeuwenhoekiella blandensis MED217]
 gi|85830736|gb|EAQ49194.1| 30S ribosomal protein S1 [Leeuwenhoekiella blandensis MED217]
          Length = 627

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 229 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGTVKNITSYGVFVDLGGV-DGLVHITDLS 287

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   +++V     + V +LDFD D+ +I+L +K
Sbjct: 288 WSRINHPNEIVDLDQKLNVVILDFDEDKTRIQLGLK 323



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL--DFDDR 680
           KG+VV + D+GAFV      +GL+H+S++S +  +    D V  GD V  ++L  D +DR
Sbjct: 344 KGKVVVIADYGAFVEVEEGVEGLIHVSEMSWSTHLRSAQDFVNVGDEVEAQILTMDREDR 403

Query: 681 GKIKLSMKVVDQN 693
            K+ L +K + Q+
Sbjct: 404 -KMSLGIKQLTQD 415


>gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R++       +   GS L   GDT+ I   T  T         L G   
Sbjct: 1   MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAET----GVPHFLRGKGV 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +TG  SRMG  + R    GR      L  R++   +        T+ I
Sbjct: 57  GWVTAEYGMLPRSTG--SRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+DA             PI   +A +++G + +G   +
Sbjct: 115 DCDVIQADGGTRTASITGACVALVDAVNSLRSKGAIKADPIKHRIAAVSVG-IYNGTPVL 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED     D  +  TDSG
Sbjct: 174 ---DLDYAEDSNAETDLNLIMTDSG 195


>gi|268325868|emb|CBH39456.1| translation initiation factor 2, alpha subunit [uncultured
           archaeon]
          Length = 269

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + PE  ++    V ++  FGAFV     G ++GL+HIS++++  V    D V+E   V  
Sbjct: 5   EWPEKGELVICAVKELKSFGAFVSVVEYGGKEGLIHISEVASGWVKHLRDYVREEQKVVC 64

Query: 673 KLLDFD-DRGKIKLSMKVVDQ 692
           K+L  D  RG I LS+K V++
Sbjct: 65  KVLFVDARRGHIDLSLKAVNE 85


>gi|257461293|ref|ZP_05626390.1| 30S ribosomal protein S1 [Campylobacter gracilis RM3268]
 gi|257441321|gb|EEV16467.1| 30S ribosomal protein S1 [Campylobacter gracilis RM3268]
          Length = 555

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V K+  +G FV   G  DGLVH S++S +     S + KEGD V VK++ +D D+
Sbjct: 201 IIEGVVKKITTYGMFVDVGGV-DGLVHYSEISYKGPVNPSSLYKEGDKVPVKVIKYDNDK 259

Query: 681 GKIKLSMK 688
             + LS+K
Sbjct: 260 KHLSLSIK 267



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG V  + +FGAFV   G  +GL+H    S +R  K  ++ K GD + VK++  
Sbjct: 369 KVGDVLKGSVTTITNFGAFVRIDGV-EGLLHNEDASWDRGEKCKNLFKVGDEIEVKIIKI 427

Query: 678 D-DRGKIKLSMK 688
           D D  KI L+ K
Sbjct: 428 DKDTQKISLNHK 439


>gi|62289149|ref|YP_220942.1| ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82699088|ref|YP_413662.1| ribonuclease PH [Brucella melitensis biovar Abortus 2308]
 gi|148559274|ref|YP_001258205.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161618161|ref|YP_001592048.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163842442|ref|YP_001626846.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189023423|ref|YP_001934191.1| ribonuclease PH [Brucella abortus S19]
 gi|225626711|ref|ZP_03784750.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237814642|ref|ZP_04593640.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|254690474|ref|ZP_05153728.1| ribonuclease PH [Brucella abortus bv. 6 str. 870]
 gi|254694963|ref|ZP_05156791.1| ribonuclease PH [Brucella abortus bv. 3 str. Tulya]
 gi|254696594|ref|ZP_05158422.1| ribonuclease PH [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700978|ref|ZP_05162806.1| ribonuclease PH [Brucella suis bv. 5 str. 513]
 gi|254705349|ref|ZP_05167177.1| ribonuclease PH [Brucella suis bv. 3 str. 686]
 gi|254707138|ref|ZP_05168966.1| ribonuclease PH [Brucella pinnipedialis M163/99/10]
 gi|254709319|ref|ZP_05171130.1| ribonuclease PH [Brucella pinnipedialis B2/94]
 gi|254713260|ref|ZP_05175071.1| ribonuclease PH [Brucella ceti M644/93/1]
 gi|254716387|ref|ZP_05178198.1| ribonuclease PH [Brucella ceti M13/05/1]
 gi|254718387|ref|ZP_05180198.1| ribonuclease PH [Brucella sp. 83/13]
 gi|254731507|ref|ZP_05190085.1| ribonuclease PH [Brucella abortus bv. 4 str. 292]
 gi|256030842|ref|ZP_05444456.1| ribonuclease PH [Brucella pinnipedialis M292/94/1]
 gi|256060312|ref|ZP_05450485.1| ribonuclease PH [Brucella neotomae 5K33]
 gi|256158871|ref|ZP_05456725.1| ribonuclease PH [Brucella ceti M490/95/1]
 gi|256254248|ref|ZP_05459784.1| ribonuclease PH [Brucella ceti B1/94]
 gi|256258730|ref|ZP_05464266.1| ribonuclease PH [Brucella abortus bv. 9 str. C68]
 gi|256368637|ref|YP_003106143.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260169746|ref|ZP_05756557.1| ribonuclease PH [Brucella sp. F5/99]
 gi|260546446|ref|ZP_05822186.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260567190|ref|ZP_05837660.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260756028|ref|ZP_05868376.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759252|ref|ZP_05871600.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760975|ref|ZP_05873318.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885049|ref|ZP_05896663.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215305|ref|ZP_05929586.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261218173|ref|ZP_05932454.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261221399|ref|ZP_05935680.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|261314614|ref|ZP_05953811.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316830|ref|ZP_05956027.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261320979|ref|ZP_05960176.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261324287|ref|ZP_05963484.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261751499|ref|ZP_05995208.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261756063|ref|ZP_05999772.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|261759287|ref|ZP_06002996.1| ribonuclease PH [Brucella sp. F5/99]
 gi|265983351|ref|ZP_06096086.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|265987900|ref|ZP_06100457.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265997361|ref|ZP_06109918.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|294851571|ref|ZP_06792244.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297247565|ref|ZP_06931283.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306839620|ref|ZP_07472424.1| ribonuclease PH [Brucella sp. NF 2653]
 gi|306842542|ref|ZP_07475193.1| ribonuclease PH [Brucella sp. BO2]
 gi|306844440|ref|ZP_07477030.1| ribonuclease PH [Brucella sp. BO1]
 gi|75497456|sp|Q57FK3|RNPH_BRUAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123546812|sp|Q2YP33|RNPH_BRUA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228268|sp|A5VNA8|RNPH_BRUO2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043754|sp|A9M7B8|RNPH_BRUC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043755|sp|B0CJ32|RNPH_BRUSI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736890|sp|B2S8G4|RNPH_BRUA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62195281|gb|AAX73581.1| Rph, ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82615189|emb|CAJ10128.1| 3' exoribonuclease:Ribonuclease PH [Brucella melitensis biovar
           Abortus 2308]
 gi|148370531|gb|ABQ60510.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161334972|gb|ABX61277.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163673165|gb|ABY37276.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189018995|gb|ACD71717.1| Ribonuclease PH [Brucella abortus S19]
 gi|225618368|gb|EEH15411.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237789479|gb|EEP63689.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|255998795|gb|ACU47194.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260096553|gb|EEW80429.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260156708|gb|EEW91788.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260669570|gb|EEX56510.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671407|gb|EEX58228.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676136|gb|EEX62957.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874577|gb|EEX81646.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916912|gb|EEX83773.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260919983|gb|EEX86636.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|260923262|gb|EEX89830.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261293669|gb|EEX97165.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261296053|gb|EEX99549.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261300267|gb|EEY03764.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261303640|gb|EEY07137.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261739271|gb|EEY27267.1| ribonuclease PH [Brucella sp. F5/99]
 gi|261741252|gb|EEY29178.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745816|gb|EEY33742.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|262551829|gb|EEZ07819.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|264660097|gb|EEZ30358.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|264661943|gb|EEZ32204.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|294820160|gb|EFG37159.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297174734|gb|EFH34081.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306275253|gb|EFM57003.1| ribonuclease PH [Brucella sp. BO1]
 gi|306287398|gb|EFM58878.1| ribonuclease PH [Brucella sp. BO2]
 gi|306405318|gb|EFM61593.1| ribonuclease PH [Brucella sp. NF 2653]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R IS + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R  A + ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL 448
           ++ ++DG +  A + G  +AL
Sbjct: 117 DVIQADGGTRTAAITGGWVAL 137


>gi|291619462|ref|YP_003522204.1| Rph [Pantoea ananatis LMG 20103]
 gi|291154492|gb|ADD79076.1| Rph [Pantoea ananatis LMG 20103]
 gi|327395785|dbj|BAK13207.1| ribonuclease Rph [Pantoea ananatis AJ13355]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 27/199 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   G+T+ +   T+    DE     L G  +
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G    R +   RL  R++   +       YT+ +
Sbjct: 57  GWVTAEYGMLPRSTH--SRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITL 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+   
Sbjct: 115 DCDVIQADGGTRTASITGACVALADALNKLVASGKLKANPMKGMVAAVSVGIV-NGE--- 170

Query: 475 ILSDISGDEDHLGHMDFKV 493
            L D+   ED     D  V
Sbjct: 171 ALCDLEYVEDSAAETDMNV 189


>gi|256027631|ref|ZP_05441465.1| transcription accessory protein [Fusobacterium sp. D11]
 gi|289765589|ref|ZP_06524967.1| transcription accessory protein [Fusobacterium sp. D11]
 gi|289717144|gb|EFD81156.1| transcription accessory protein [Fusobacterium sp. D11]
          Length = 722

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + VK+ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGR 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VGLTRK 719


>gi|224437368|ref|ZP_03658340.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
 gi|313143833|ref|ZP_07806026.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
 gi|313128864|gb|EFR46481.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
          Length = 550

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + +  G V K+  FG FV   G  +GLVH ++LS +     +   KEGD V VK+L +
Sbjct: 197 ENDGVQNGVVAKIAPFGIFVDIGGI-EGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGY 255

Query: 678 DDRG-KIKLSMKVVDQNTGKPI 698
           D++  ++ LSMK +  +  K I
Sbjct: 256 DEKKRRLSLSMKALGDDPWKEI 277



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ KG++  + DFGAFV   G  DGL+H      ++  K  +  K GD + VK++  
Sbjct: 369 QVGEVIKGKIATLTDFGAFVKLDGV-DGLLHNEDAFWDKELKCKNEFKVGDEIEVKIIKI 427

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +  +I LS K++D +  K
Sbjct: 428 DKENERISLSKKLLDHSPAK 447


>gi|86131923|ref|ZP_01050520.1| 30S ribosomal protein S1 [Dokdonia donghaensis MED134]
 gi|85817745|gb|EAQ38919.1| 30S ribosomal protein S1 [Dokdonia donghaensis MED134]
          Length = 610

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 213 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLVHITDLS 271

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   +++V+    + V +LDFD D+ +I+L +K
Sbjct: 272 WSRINHPNEIVELDQKLNVVILDFDEDKTRIQLGLK 307



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V  ++L  D  DR
Sbjct: 328 KGKVVVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFVKVGDVVDAQILTLDREDR 387

Query: 681 GKIKLSMKVVDQN 693
            K+ L +K + Q+
Sbjct: 388 -KMSLGIKQLTQD 399


>gi|258648127|ref|ZP_05735596.1| ribosomal protein S1 [Prevotella tannerae ATCC 51259]
 gi|260852006|gb|EEX71875.1| ribosomal protein S1 [Prevotella tannerae ATCC 51259]
          Length = 590

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 15/94 (15%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTE 655
           AE+EA ++ I        ++K+ KGQV++     +  +G F+   G  DGL+HI+ LS  
Sbjct: 198 AELEAQKQEI--------ISKLQKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITDLSWG 248

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           RV    +VV+    + V +LDFD+  K I L +K
Sbjct: 249 RVNDPHEVVQLDQKLNVVILDFDEEKKRIALGLK 282



 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+VV + D+GAFV      +GL+H+S++S ++ +    D +K GD V   +L  D    
Sbjct: 303 QGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFLKVGDEVEAVILTLDRQER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  K I
Sbjct: 363 KMSLGIKQLKEDPWKDI 379



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           ++G+V    +FG FV      DGLVHIS LS T++V   S+  + G  + V +L+ D   
Sbjct: 389 HQGKVRNFTNFGVFVELEEGVDGLVHISDLSWTKKVKHPSEFTQLGAELDVVVLEIDKAN 448

Query: 682 -KIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 449 RRLSLGHKQLEEN 461


>gi|305680859|ref|ZP_07403666.1| Tex-like protein N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659064|gb|EFM48564.1| Tex-like protein N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 776

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+     I +G V  V  FGAFV      DGLVH+S L+ + V+   D+V+ 
Sbjct: 635 KEGVEKLSDLTP-GMILEGTVTNVAAFGAFVDVGVHHDGLVHVSALANKYVSDPHDIVRS 693

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G       +    +R +I LSM+ +D   G+P
Sbjct: 694 GQVVKVKVMDVDVERHRIGLSMR-LDDEPGQP 724


>gi|237743222|ref|ZP_04573703.1| transcription accessory protein [Fusobacterium sp. 7_1]
 gi|229433518|gb|EEO43730.1| transcription accessory protein [Fusobacterium sp. 7_1]
          Length = 722

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + VK+ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGR 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VGLTRK 719


>gi|167765125|ref|ZP_02437238.1| hypothetical protein BACSTE_03511 [Bacteroides stercoris ATCC
           43183]
 gi|167696753|gb|EDS13332.1| hypothetical protein BACSTE_03511 [Bacteroides stercoris ATCC
           43183]
          Length = 597

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|255953027|ref|XP_002567266.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588977|emb|CAP95098.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1806

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDT 669
            ++ D+ E  +I  G+V KV +FGAF+   G+ +  GL H S+++ +RV     +  EGD 
Sbjct: 1312 TLKDLKE-GQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMADKRVEDARKLYDEGDA 1370

Query: 670  VWVKLLDFD-DRGKIKLSMK 688
            V  K++  D D  KI  S+K
Sbjct: 1371 VKAKIIKIDLDSKKISFSLK 1390


>gi|121533952|ref|ZP_01665778.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307463|gb|EAX48379.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  ++D+     + KG V  V DFG FV      +GL+H S+LS +      D+V  
Sbjct: 638 RKNIVKLSDITP-GTLVKGTVHNVTDFGVFVDIGLKTNGLIHRSELSHKPFRHPLDIVAV 696

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
           GD V   +L  D+ R +I LS+K
Sbjct: 697 GDIVECIVLSVDEARSRIALSLK 719


>gi|329766870|ref|ZP_08258398.1| hypothetical protein HMPREF0428_00095 [Gemella haemolysans M341]
 gi|328837595|gb|EGF87220.1| hypothetical protein HMPREF0428_00095 [Gemella haemolysans M341]
          Length = 722

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FGAF+     +D +VHIS++S   +    DV+  G  V V ++D D +RG++
Sbjct: 656 GTVRNITQFGAFIDIGLKKDAMVHISKISKNYIKNPLDVLSVGQIVDVYVIDVDKERGRV 715

Query: 684 KLSM 687
            L+M
Sbjct: 716 ALAM 719


>gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130]
 gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R ++ + G  +   GS L   GDT  +   +L    +E+    L G  + 
Sbjct: 5   RPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASL----EERVPPWLRGAGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG   R  A + ++ G      RL  R++  V+   A     + +  +
Sbjct: 61  WVTAEYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCD 120

Query: 429 ITESDGSSSMATVCGSSLAL 448
           + ++DG +  A++ G+ +AL
Sbjct: 121 VIQADGGTRTASITGAYVAL 140


>gi|157783152|ref|YP_001491547.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
 gi|298351814|sp|P0CG19|RNPH_ECOLI RecName: Full=Inactive ribonuclease PH; Short=RNase PH; AltName:
           Full=tRNA nucleotidyltransferase
 gi|290493|gb|AAA61996.1| RNase PH [Escherichia coli]
 gi|157672248|gb|ABV59576.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 228

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|332290893|ref|YP_004429502.1| RNA binding S1 domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168979|gb|AEE18234.1| RNA binding S1 domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 610

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGLVHI+ LS
Sbjct: 213 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFVDLGGV-DGLVHITDLS 271

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   +++V+    + V +LDFD D+ +I+L +K
Sbjct: 272 WSRINHPNEIVELDQKLNVVILDFDEDKTRIQLGLK 307



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V  ++L  D  DR
Sbjct: 328 KGKVVVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFVKVGDVVDAQILTLDREDR 387

Query: 681 GKIKLSMKVVDQN 693
            K+ L +K + Q+
Sbjct: 388 -KMSLGIKQLTQD 399


>gi|110636340|ref|YP_676548.1| ribonuclease PH [Mesorhizobium sp. BNC1]
 gi|122965408|sp|Q11B42|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R  + +R IS + G+ +   GS L   GDT  +   +L    +E+    L  + +     
Sbjct: 6   RQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASL----EEKVPAWLRNSGKGWVTA 61

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +TGE  R  A S ++ G      RL  R++  V+   A     + +  ++ ++
Sbjct: 62  EYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVLQA 121

Query: 433 DGSSSMATVCGSSLALMDA 451
           DG +  A + G  +AL D 
Sbjct: 122 DGGTRTAAITGGFVALHDC 140


>gi|325285094|ref|YP_004260884.1| RNA-binding S1 domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324320548|gb|ADY28013.1| RNA binding S1 domain protein [Cellulophaga lytica DSM 7489]
          Length = 610

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ LS
Sbjct: 211 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLIHITDLS 269

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             R+   ++VV+    + V +LDFDD + +I+L +K ++++
Sbjct: 270 WSRINHPNEVVELDQKMNVVILDFDDNKSRIQLGLKQLEKH 310



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKL--LDFDDR 680
           KG+VV + D+GAF+      +GLVH+S++S +  +    D VK GD +  ++  LD DDR
Sbjct: 326 KGKVVVIADYGAFIEVAEGVEGLVHVSEMSWSTHLRSAQDFVKVGDEIEAQILTLDRDDR 385

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 386 -KMSLGIK 392



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW 671
           IT    V+  +KG V    +FG FV      DGL++IS LS T+++   S+ V  G+T+ 
Sbjct: 402 ITSKYPVHSRHKGIVRNFTNFGVFVEMEEGIDGLIYISDLSWTKKIKHPSEFVTVGETLE 461

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           V++L+ D D  K+ L  K   +N
Sbjct: 462 VEVLELDVDARKLSLGHKQTTEN 484


>gi|262193868|ref|YP_003265077.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
 gi|262077215|gb|ACY13184.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
          Length = 410

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV++  FGAF+      +GL HISQL    R+    +V+K GD V V +L  + +R 
Sbjct: 308 KGRVVRLQPFGAFIEIEPGIEGLAHISQLGAGRRIQHPREVLKVGDEVEVNVLGVERERR 367

Query: 682 KIKLSM 687
           +I LS+
Sbjct: 368 RISLSI 373



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-------- 675
           +G V  +  FGAFV   G  +G++H+S+L   RV    DV+  G  V V++L        
Sbjct: 216 RGTVTSMKPFGAFVDIGGL-EGMIHVSELGFGRVDHPEDVLHVGQEVDVQVLRIEETRDK 274

Query: 676 DFDDRGKIKLSMKVV 690
           D   R +I LSMK +
Sbjct: 275 DAKRRERIALSMKAL 289


>gi|255693432|ref|ZP_05417107.1| ribosomal protein S1 [Bacteroides finegoldii DSM 17565]
 gi|260620818|gb|EEX43689.1| ribosomal protein S1 [Bacteroides finegoldii DSM 17565]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|224024480|ref|ZP_03642846.1| hypothetical protein BACCOPRO_01205 [Bacteroides coprophilus DSM
           18228]
 gi|224017702|gb|EEF75714.1| hypothetical protein BACCOPRO_01205 [Bacteroides coprophilus DSM
           18228]
          Length = 595

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPREVVQLDQKLNVVILDFDDEKKRIALGLK 282



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|298675857|ref|YP_003727607.1| translation initiation factor 2 subunit alpha [Methanohalobium
           evestigatum Z-7303]
 gi|298288845|gb|ADI74811.1| translation initiation factor 2, alpha subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 271

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M ++  + P V       V  V DFGA+V     G ++G +HIS++    V    D V+E
Sbjct: 2   MDKNNNEWPNVGDFVVCTVKNVTDFGAYVTLDEYGDKEGFIHISEIKAGWVKYVRDYVRE 61

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  +  K+L  D +R  I LS+K V++
Sbjct: 62  GQKIVCKVLKVDPNRRHIDLSLKDVNE 88


>gi|160887146|ref|ZP_02068149.1| hypothetical protein BACOVA_05162 [Bacteroides ovatus ATCC 8483]
 gi|237721414|ref|ZP_04551895.1| 30S ribosomal protein S1 [Bacteroides sp. 2_2_4]
 gi|260171551|ref|ZP_05757963.1| 30S ribosomal protein S1 [Bacteroides sp. D2]
 gi|293370856|ref|ZP_06617401.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CMC 3f]
 gi|299148638|ref|ZP_07041700.1| ribosomal protein S1 [Bacteroides sp. 3_1_23]
 gi|315919865|ref|ZP_07916105.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107557|gb|EDO09302.1| hypothetical protein BACOVA_05162 [Bacteroides ovatus ATCC 8483]
 gi|229449210|gb|EEO55001.1| 30S ribosomal protein S1 [Bacteroides sp. 2_2_4]
 gi|292634072|gb|EFF52616.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CMC 3f]
 gi|298513399|gb|EFI37286.1| ribosomal protein S1 [Bacteroides sp. 3_1_23]
 gi|313693740|gb|EFS30575.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|34762725|ref|ZP_00143715.1| LytB protein; SSU ribosomal protein S1P [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887624|gb|EAA24703.1| LytB protein; SSU ribosomal protein S1P [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 827

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S T++    ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGERVKVRITDLHP 622

Query: 679 DRGKIKLSMK 688
           +  K+KL +K
Sbjct: 623 ENRKLKLGIK 632



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKL 542

Query: 686 SMKVVDQN 693
           S+K ++++
Sbjct: 543 SIKKLEED 550


>gi|307108719|gb|EFN56958.1| hypothetical protein CHLNCDRAFT_143529 [Chlorella variabilis]
          Length = 349

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 18/98 (18%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTE-----------RVAKTSDVV 664
           PEV  I+  +VV V  FGAFV   G R   L+H +Q+S E           +V      +
Sbjct: 14  PEVGTIHHARVVSVRPFGAFVELPGYRKQALIHHTQVSDEIQFGREEDDEMKVKAMEFFL 73

Query: 665 KEGDTVWVKLLDFDDRG------KIKLSMKVVDQNTGK 696
             G+  W+K+L+    G      K+  SM+ V Q  G+
Sbjct: 74  PRGEQGWLKVLEVRQEGPGPQGIKLAASMRAVSQEDGR 111


>gi|290558883|gb|EFD92273.1| translation initiation factor 2, alpha subunit [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 240

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           IY  +V K++  G  V+  G ++G +HIS+LS   V    D+ KEGD +  K++
Sbjct: 8   IYICKVKKLLQHGVIVYIAGEKEGFIHISELSKRWVRDVKDIAKEGDMLVCKVI 61


>gi|255513911|gb|EET90176.1| DNA-directed RNA polymerase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 195

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 15/100 (15%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KT 660
           ++T +P+V ++  G V ++++FGAFV   G  DGLVH+SQ++ + ++           K+
Sbjct: 74  ALTYMPKVGEVVAGDVSEMVEFGAFVR-MGPMDGLVHVSQIAGDFLSFDRKTQTFVSKKS 132

Query: 661 SDVVKEGDTVWVKLLDFDDRGKI---KLSMKVVDQNTGKP 697
              +K+GD+V+ K+     +  +   K+++ +     GKP
Sbjct: 133 GKTLKKGDSVYAKVSTVSIKSSVKDSKIALTMRSDGLGKP 172


>gi|255320662|ref|ZP_05361839.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262380705|ref|ZP_06073858.1| ribonuclease PH [Acinetobacter radioresistens SH164]
 gi|255302278|gb|EET81518.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262297653|gb|EEY85569.1| ribonuclease PH [Acinetobacter radioresistens SH164]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R    +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALNQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+DA             P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLERKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|258404494|ref|YP_003197236.1| Tex-like protein protein-like protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257796721|gb|ACV67658.1| Tex-like protein protein-like protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 703

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +R I  + E   I  G V  ++DFGAFV      DGL+HIS+LS  RV+   +V+  
Sbjct: 620 RDDVRDIEALRE-GDIVSGVVRSIVDFGAFVDVGLKNDGLIHISELSHSRVSHPLEVLAV 678

Query: 667 GDTV-WVKLLD-FDDRGKIKLSMK 688
              +  +++L  F ++G++ LS+K
Sbjct: 679 NQYLPRIRVLRVFPEKGQVALSLK 702


>gi|254515846|ref|ZP_05127906.1| ribonuclease PH [gamma proteobacterium NOR5-3]
 gi|219675568|gb|EED31934.1| ribonuclease PH [gamma proteobacterium NOR5-3]
          Length = 240

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +RDIS +        GS L   G+T+ I   ++    ++     L G    
Sbjct: 3   RPSGRATDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASV----EDSVPRFLRGKNSG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TG  SRMG  + R    GR      L  R++   +  +    +T+ + 
Sbjct: 59  WITAEYGMLPRSTG--SRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA 451
            ++ ++DG +  A++ G+ +AL+DA
Sbjct: 117 CDVIQADGGTRTASITGAFVALVDA 141


>gi|218247838|ref|YP_002373209.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8801]
 gi|257060841|ref|YP_003138729.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8802]
 gi|218168316|gb|ACK67053.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
 gi|256591007|gb|ACV01894.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
          Length = 331

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 196 EVGQVVVGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDALKVMIIDL 254

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 255 DAERGRISLSTKQLEPEPG 273


>gi|126652649|ref|ZP_01724810.1| ribonuclease PH [Bacillus sp. B14905]
 gi|126590498|gb|EAZ84616.1| ribonuclease PH [Bacillus sp. B14905]
          Length = 248

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 22/202 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R +      L    GS L   G+T+ I   T+    +++    L G  + 
Sbjct: 3   RFDGRMADELRPVKMVGEYLLHPEGSVLIQVGNTKVICTATI----EDKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +     S  G  + R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+  A             P++  +A  ++G+V++    +   
Sbjct: 119 VIQADGGTRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFLAATSVGIVEEQGAVL--- 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED    +D  +  T +G
Sbjct: 176 DLNYVEDVAAAVDMNIVMTGAG 197


>gi|237715632|ref|ZP_04546113.1| 30S ribosomal protein S1 [Bacteroides sp. D1]
 gi|262408641|ref|ZP_06085187.1| ribosomal protein S1 [Bacteroides sp. 2_1_22]
 gi|294646672|ref|ZP_06724297.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CC 2a]
 gi|229444341|gb|EEO50132.1| 30S ribosomal protein S1 [Bacteroides sp. D1]
 gi|262353506|gb|EEZ02600.1| ribosomal protein S1 [Bacteroides sp. 2_1_22]
 gi|292637960|gb|EFF56353.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CC 2a]
          Length = 599

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  +V    +FG FV      DGL+HIS LS T++V   S+  + G  + V++L+ D D 
Sbjct: 389 HTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKDN 448

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 449 RRLSLGHKQLEEN 461


>gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Lutiella nitroferrum 2002]
 gi|224603358|gb|EEG09534.1| ribonuclease PH [Lutiella nitroferrum 2002]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++   G  +   GS L   GDT+ I   ++    DE     L G  +
Sbjct: 1   MRPSSRPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASV----DESVPGFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R  A S ++ G      RL  R++  V+         ++I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GV---------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA  G+         PI   VA +++G V +G   +  
Sbjct: 117 DVIQADGGTRTASITGAFVALHDAISGLIAQGKLQESPIRDFVAAVSVG-VFEGRPVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 174 -DLDYLEDSACETDMNVVMTGSG 195


>gi|152994801|ref|YP_001339636.1| RNA-binding S1 domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835725|gb|ABR69701.1| RNA binding S1 domain protein [Marinomonas sp. MWYL1]
          Length = 720

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++ + DV E     +G V  V  FGAFV     +DGL+HISQL+   V    D+V+ G  
Sbjct: 640 VQKLEDVQE-GMTLEGVVTNVAAFGAFVDLGVHQDGLIHISQLADRFVKDPRDLVRVGQV 698

Query: 670 VWVKLLDFD-DRGKIKL 685
           V V +L+ D  R +I L
Sbjct: 699 VKVTVLEVDVQRKRIAL 715


>gi|326800528|ref|YP_004318347.1| RNA binding S1 domain protein [Sphingobacterium sp. 21]
 gi|326551292|gb|ADZ79677.1| RNA binding S1 domain protein [Sphingobacterium sp. 21]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V K+ KGQV++     + DFG F+   G  DGL+HI+ +S  R+    +V+   + + V 
Sbjct: 252 VAKLEKGQVLEGTVKNITDFGVFIDLGGV-DGLLHITDISWGRIEHPKEVLSLDEKINVV 310

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFDD  K I L +K
Sbjct: 311 VLDFDDEKKRIALGLK 326



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG++V V D+GAF+      +GL+H+S++S ++ +    + +K GD +  ++L   DR +
Sbjct: 347 KGKIVTVADYGAFLEITPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEVLTL-DREE 405

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 406 RKMSLGI 412



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +K  V  + +FG FV      DGL+HIS LS ++++   ++  K G+ + V +L+ D+  
Sbjct: 433 HKAVVKNMTNFGVFVEIEEGVDGLIHISDLSWSKKINHPNEFTKVGEELDVVVLELDEEN 492

Query: 682 -KIKLSMKVVDQN 693
            K+ L  K +++N
Sbjct: 493 RKLSLGHKQLEEN 505


>gi|319891932|ref|YP_004148807.1| General stress protein 13 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161628|gb|ADV05171.1| General stress protein 13 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464977|gb|ADX77130.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius
           ED99]
          Length = 129

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  K +V  +  +GAFV    + +GL+HIS++  + V     ++  G TV  K++  D
Sbjct: 8   VGQHVKVRVTGIQPYGAFVETPDSTEGLIHISEIMDDYVHNLKKLLSPGQTVKAKIISID 67

Query: 679 DRGKIKLSMK 688
             GK+ LS+K
Sbjct: 68  HNGKLNLSLK 77


>gi|229918348|ref|YP_002886994.1| ribonuclease PH [Exiguobacterium sp. AT1b]
 gi|229469777|gb|ACQ71549.1| ribonuclease PH [Exiguobacterium sp. AT1b]
          Length = 249

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           D R  + +R +     + +   GS L   GDT+ I   T+    +E+  + L G ++   
Sbjct: 3   DARRFDELRPVEIVPHVNKHAEGSVLISIGDTKVICTATV----EERVPNFLRGKKQGWI 58

Query: 375 MMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              Y  LP ATG+     S  G  S R +   RL  R++  V+        T+ +  ++ 
Sbjct: 59  NAEYAMLPRATGDRTVRESVRGKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G   AL+ A             PI + VA I++G     D+ ++  D+
Sbjct: 119 QADGGTRTASITGGFCALVLAVDRLIRQGKLEDTPIKEGVAAISVGRT---DELVL--DL 173

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
              ED    +D  V  T SG
Sbjct: 174 DYLEDAAAEVDMNVVMTASG 193


>gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
 gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 21/197 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +       +   GS L   GDT  +   T+    +++    L G  + 
Sbjct: 3   RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTATV----EDKVPPFLRGANKG 58

Query: 373 DFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT   +    G  S R +   RL  RA+  V+   A    T+ +  ++ 
Sbjct: 59  WVTAEYAMLPRATDLRTGRERGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVL 118

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +A+ DA             PI + +A  ++G V +     ++ D+
Sbjct: 119 QADGGTRTASITGAFVAMTDALYKLAVNGQIKKFPIKEFIAATSVGRVNNE----MVLDL 174

Query: 480 SGDEDHLGHMDFKVAGT 496
              ED    +D  +  T
Sbjct: 175 CYKEDSAAEVDMNIVMT 191


>gi|302891949|ref|XP_003044856.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
 gi|256725781|gb|EEU39143.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
          Length = 1773

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 620  NKIYKGQVV-----KVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWV 672
            N I +GQVV     KV DFGAF+    + +  GL H SQ++ + VA  + + KEGD V  
Sbjct: 1279 NDIKEGQVVTGKVRKVEDFGAFILVDNSDNISGLCHRSQMAEKPVADATKLYKEGDAVKA 1338

Query: 673  KLLDFDDRGK 682
            ++L+ D + +
Sbjct: 1339 RILEIDTKKR 1348


>gi|253583194|ref|ZP_04860392.1| LytB protein [Fusobacterium varium ATCC 27725]
 gi|251833766|gb|EES62329.1| LytB protein [Fusobacterium varium ATCC 27725]
          Length = 540

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ I +G+V K++ +G FV      +GLVH+S  +  ++    ++ V+ GDTV VK+++F
Sbjct: 274 VDSIVEGKVTKILPYGVFVEIADGVEGLVHMSDFTWNKKRVSLNEFVQLGDTVKVKIIEF 333

Query: 678 DD-RGKIKLSMKVVDQN 693
                K+KL +K +  N
Sbjct: 334 QPAERKLKLGIKQLSAN 350


>gi|57641035|ref|YP_183513.1| translation initiation factor IF-2 subunit alpha [Thermococcus
           kodakarensis KOD1]
 gi|68052050|sp|Q5JE49|IF2A_PYRKO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|57159359|dbj|BAD85289.1| translation initiation factor eIF-2, alpha subunit [Thermococcus
           kodakarensis KOD1]
          Length = 275

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V  +  +GAF+       ++G +HIS+++   V    D +KE
Sbjct: 1   MPRKAKEYPEEGEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  +  K++  D ++G I LS+K V+Q   K
Sbjct: 61  GQKIVAKVIRVDPEKGHIDLSLKRVNQQQRK 91


>gi|313674969|ref|YP_004052965.1| SSU ribosomal protein s1p [Marivirga tractuosa DSM 4126]
 gi|312941667|gb|ADR20857.1| SSU ribosomal protein S1P [Marivirga tractuosa DSM 4126]
          Length = 660

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+N  +D  V ++   L E +  ++    + ++ E  ++ +G +  + +FG F+   G  
Sbjct: 183 KINYSNDNVV-VSHKVLIEKDLEKQKAEILNNL-EKGQVLEGVIKNMTNFGVFIDLGGV- 239

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DGL+HI+ +S  R+    +V+K  + V V +LDFD+ + +I L MK
Sbjct: 240 DGLLHITDISWGRINHPEEVLKLDEKVKVVVLDFDEGKKRISLGMK 285



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +KG V  + +FG F+      DGLVH+S LS T+++   S+ VK G+ + V +L+ D D 
Sbjct: 394 HKGVVRNMTNFGLFIELEEGIDGLVHVSDLSWTKKIKHPSEFVKVGEELNVVVLELDVDN 453

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 454 RRLALGHKQLEEN 466



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           S+ +  +V    KG++V V D+GAF+      +GL+H+S++S ++ +    D +  GD +
Sbjct: 294 SLAEGLDVGSKVKGKIVNVADYGAFLEIAPGVEGLIHVSEMSWSQHLRNPQDFINVGDEL 353

Query: 671 WVKLLDFD-DRGKIKLSMK 688
              +L  D +  K+ L +K
Sbjct: 354 EAVVLTLDKEERKMSLGIK 372


>gi|298481477|ref|ZP_06999669.1| ribosomal protein S1 [Bacteroides sp. D22]
 gi|295086940|emb|CBK68463.1| SSU ribosomal protein S1P [Bacteroides xylanisolvens XB1A]
 gi|298272341|gb|EFI13910.1| ribosomal protein S1 [Bacteroides sp. D22]
          Length = 599

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  +V    +FG FV      DGL+HIS LS T++V   S+  + G  + V++L+ D D 
Sbjct: 389 HTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKDN 448

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 449 RRLSLGHKQLEEN 461


>gi|67523381|ref|XP_659751.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|40745035|gb|EAA64191.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|259487526|tpe|CBF86270.1| TPA: rRNA biogenesis protein RRP5, putative (AFU_orthologue;
            AFUA_2G16040) [Aspergillus nidulans FGSC A4]
          Length = 1780

 Score = 44.7 bits (104), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V KV  FGAF+   G+ +  GL H ++++  RV     + +EGD V  K+L  D
Sbjct: 1317 QIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVD 1376

Query: 679  -DRGKIKLSMK 688
             D+GKI   +K
Sbjct: 1377 RDQGKISFGLK 1387


>gi|53712335|ref|YP_098327.1| 30S ribosomal protein S1 [Bacteroides fragilis YCH46]
 gi|60680506|ref|YP_210650.1| 30S ribosomal protein S1 [Bacteroides fragilis NCTC 9343]
 gi|253563628|ref|ZP_04841085.1| 30S ribosomal protein S1 [Bacteroides sp. 3_2_5]
 gi|255007845|ref|ZP_05279971.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12]
 gi|265762527|ref|ZP_06091095.1| ribosomal protein S1 [Bacteroides sp. 2_1_16]
 gi|313145551|ref|ZP_07807744.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12]
 gi|52215200|dbj|BAD47793.1| 30S ribosomal protein S1 [Bacteroides fragilis YCH46]
 gi|60491940|emb|CAH06700.1| putative 30S ribosomal protein S1 [Bacteroides fragilis NCTC 9343]
 gi|251947404|gb|EES87686.1| 30S ribosomal protein S1 [Bacteroides sp. 3_2_5]
 gi|263255135|gb|EEZ26481.1| ribosomal protein S1 [Bacteroides sp. 2_1_16]
 gi|301162043|emb|CBW21587.1| putative 30S ribosomal protein S1 [Bacteroides fragilis 638R]
 gi|313134318|gb|EFR51678.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12]
          Length = 597

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|238902734|ref|YP_002928530.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|298351813|sp|P0CG18|RNPH_ECOBW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|238860742|gb|ACR62740.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|260447338|gb|ACX37760.1| ribonuclease PH [Escherichia coli DH1]
 gi|315138225|dbj|BAJ45384.1| ribonuclease PH [Escherichia coli DH1]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|188495519|ref|ZP_03002789.1| ribonuclease PH [Escherichia coli 53638]
 gi|188490718|gb|EDU65821.1| ribonuclease PH [Escherichia coli 53638]
 gi|332345611|gb|AEE58945.1| ribonuclease PH [Escherichia coli UMNK88]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|329962073|ref|ZP_08300084.1| 30S ribosomal protein S1 [Bacteroides fluxus YIT 12057]
 gi|328530721|gb|EGF57579.1| 30S ribosomal protein S1 [Bacteroides fluxus YIT 12057]
          Length = 596

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32]
 gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32]
          Length = 258

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR+ + +RDI    G  Q   GS L   G+T+ +   ++     E      +G+  
Sbjct: 2   ARKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASV----TEGVPRWRAGSGL 57

Query: 372 NDFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y  LP AT           R+G  +  EI   RL  R++   +   A    T+ 
Sbjct: 58  GWVTAEYAMLPSATNTRGDRESVKGRIGGRT-HEI--SRLIGRSLRACIDLAALGENTIV 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPIS--------KPVAGIAMGLVKDGDDFIIL 476
           I  ++ ++DG +  A V G  +AL DA   +S        +P++     +     D  + 
Sbjct: 115 IDCDVIQADGGTRTAAVTGGYVALADAITWLSAANRLNDPQPLSSSVAAVSVGVVDGRVR 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 175 LDLPYEEDSRAEVDMNVVATDAG 197


>gi|225021095|ref|ZP_03710287.1| hypothetical protein CORMATOL_01107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946095|gb|EEG27304.1| hypothetical protein CORMATOL_01107 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 768

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+     I +G V  V  FGAFV      DGLVH+S L+ + V+   D+V+ 
Sbjct: 635 KEGVEKLSDLTP-GMILEGTVTNVAAFGAFVDVGVHHDGLVHVSALANKYVSDPHDIVRS 693

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G       +    +R +I LSM+ +D   G+P
Sbjct: 694 GQVVKVKVMDVDVERHRIGLSMR-LDDEPGQP 724


>gi|54298824|ref|YP_125193.1| hypothetical protein lpp2891 [Legionella pneumophila str. Paris]
 gi|53752609|emb|CAH14044.1| hypothetical protein lpp2891 [Legionella pneumophila str. Paris]
          Length = 789

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 28/233 (12%)

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LS ISG  D L     +        T       I  + E     A QQA  G L I+N 
Sbjct: 504 LLSHISGLNDTLAKNIVQFRDEHGAFTNRNQLKNINRMGEK----AFQQAA-GFLRIMN- 557

Query: 535 MSKVLSESRLQLGEFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
               L  S +   E  P VE I++     I+ +IG      R +++   A+  +D++  +
Sbjct: 558 GDNALDASCVH-PEAYPLVEKIISDKKVSIKEIIGN-----RELLQSINAEQYVDENFGL 611

Query: 594 KIASSSLAEIEAA-------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
                 L E+E               +E +  I D+ E   + +G V  V +FGAFV   
Sbjct: 612 PTIRDVLRELEKPGRDPRPEFRTAQFKEGVEDIKDL-EQGMVLEGVVSNVTNFGAFVDIG 670

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
             +DGLVHIS ++   +     VVK GD      +    +R +I LSMK+ D+
Sbjct: 671 VHQDGLVHISAMTNRFITDPRSVVKAGDIVKVKVVEVDKERRRIGLSMKLNDE 723


>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040133|gb|ACT56929.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 576

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E +R   RS I    E  ++ +G V  + D+G FV   G  DGL+H++ ++
Sbjct: 172 IVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGV-DGLLHVTDIA 230

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             R+   S V+  G  V VK++  + +  +I L MK +++N
Sbjct: 231 WHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKN 271


>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
          Length = 224

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 13/150 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R+   +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +     
Sbjct: 17  LREYGCEQSLLSRPDGSATFLQGDTSVLAGV-YGPAEIK-----VSREIHNKATLEVILR 70

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P       + G P+ +E  H +L R     V+  +     ++ IV +I    GS     +
Sbjct: 71  P-------KTGLPAIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQIISDAGSLLSCCL 123

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
             + + LMDAG+P+     G+   L  DG+
Sbjct: 124 NAACMGLMDAGLPMRSLFCGVTCALDNDGN 153


>gi|307151161|ref|YP_003886545.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981389|gb|ADN13270.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
          Length = 328

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 196 EVGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDELKVMIIDL 254

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 255 DAERGRISLSTKQLEPEAG 273


>gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91]
 gi|122314626|sp|Q0AJ79|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R + R    +R I      ++   GS L   G+T+ I   ++     E+    L G  + 
Sbjct: 3   RYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASV----IEKVPPFLKGAGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TGE  RM      G  S R +   RL  RA+  VL        T++I 
Sbjct: 59  WLTAEYGMLPRSTGE--RMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVK 468
            ++ ++DG +  A++ G+ +AL DA             PI   VA +++G++K
Sbjct: 117 CDVIQADGGTRTASITGAFVALCDAVGYLRAEKIISENPIKDHVAAVSVGILK 169


>gi|327439325|dbj|BAK15690.1| RNase PH [Solibacillus silvestris StLB046]
          Length = 250

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R    +R +      L    GS L   G+T+ I   T+    +E+    L G  + 
Sbjct: 3   RHDLRAVNELRPVQIDNNYLMHPEGSVLITVGNTKVICTATI----EEKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT + +R     G  S R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITAEYSMLPRATEQRTRRESSAGKVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA----GV-------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+  A    GV       P++  +A  ++G +   ++   + 
Sbjct: 119 VIQADGGTRTASITGAFVAMTQAIAKLGVDKPFVNFPVTDYLAATSVGKL---ENIGAVL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED    +D  V  T +G
Sbjct: 176 DLNYVEDSAAQVDMNVIMTGAG 197


>gi|319901380|ref|YP_004161108.1| SSU ribosomal protein S1P [Bacteroides helcogenes P 36-108]
 gi|319416411|gb|ADV43522.1| SSU ribosomal protein S1P [Bacteroides helcogenes P 36-108]
          Length = 596

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|313674771|ref|YP_004052767.1| tex-like protein [Marivirga tractuosa DSM 4126]
 gi|312941469|gb|ADR20659.1| Tex-like protein [Marivirga tractuosa DSM 4126]
          Length = 748

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  + +FGAFV     +DGLVH+S ++ + V+  ++VV     V V +L+ D+ R +I
Sbjct: 642 GIITNITNFGAFVDVGVHQDGLVHVSHIADKFVSNPAEVVNVAQKVEVTVLEVDEGRKRI 701

Query: 684 KLSMK 688
             SMK
Sbjct: 702 SFSMK 706


>gi|307611706|emb|CBX01401.1| hypothetical protein LPW_30941 [Legionella pneumophila 130b]
          Length = 789

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 28/233 (12%)

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LS ISG  D L     +        T       I  + E     A QQA  G L I+N 
Sbjct: 504 LLSHISGLNDTLAKNIVQFRDEHGAFTNRNQLKNINRMGEK----AFQQAA-GFLRIMN- 557

Query: 535 MSKVLSESRLQLGEFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
               L  S +   E  P VE I++     I+ +IG      R +++   A+  +D++  +
Sbjct: 558 GDNALDASCVH-PEAYPLVEKIISDKKVSIKEIIGN-----RELLQSINAEQYVDENFGL 611

Query: 594 KIASSSLAEIEAA-------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
                 L E+E               +E +  I D+ E   + +G V  V +FGAFV   
Sbjct: 612 PTIRDVLRELEKPGRDPRPEFRTAQFKEGVEDIKDL-EQGMVLEGVVSNVTNFGAFVDIG 670

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
             +DGLVHIS ++   +     VVK GD      +    +R +I LSMK+ D+
Sbjct: 671 VHQDGLVHISAMTNRFITDPRSVVKAGDIVKVKVVEVDKERRRIGLSMKLNDE 723


>gi|217077883|ref|YP_002335601.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Thermosipho africanus TCF52B]
 gi|217037738|gb|ACJ76260.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Thermosipho
           africanus TCF52B]
          Length = 811

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++T   +V  I  G+V  ++ +G +V+     DGLVHI  +   R  K SD+V  GD V
Sbjct: 530 QNVTKKYKVGDIVSGKVKNILSYGFYVNLEPGVDGLVHIDDIFWGRRGKISDIVSVGDIV 589

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            V + + D +  K++LS K V+
Sbjct: 590 KVMIKEIDPNNKKMRLSYKEVE 611



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV--WVKLLDFDD 679
           I +G V K+  FGAFV      DGL+  S++S +   K  DV+ EG +V  ++K +D ++
Sbjct: 455 IIEGIVKKIEKFGAFVRIFEGIDGLLPNSEVSYDTSLKVEDVLSEGQSVKLYIKKIDKEN 514

Query: 680 RGKIKLSMK 688
           R KI LS+K
Sbjct: 515 R-KILLSLK 522


>gi|189467749|ref|ZP_03016534.1| hypothetical protein BACINT_04141 [Bacteroides intestinalis DSM
           17393]
 gi|224538667|ref|ZP_03679206.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|189436013|gb|EDV04998.1| hypothetical protein BACINT_04141 [Bacteroides intestinalis DSM
           17393]
 gi|224519711|gb|EEF88816.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|153807671|ref|ZP_01960339.1| hypothetical protein BACCAC_01953 [Bacteroides caccae ATCC 43185]
 gi|149130033|gb|EDM21245.1| hypothetical protein BACCAC_01953 [Bacteroides caccae ATCC 43185]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|330991184|ref|ZP_08315137.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
 gi|329761770|gb|EGG78261.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +  Q G  +   GS+L   G T+ +   ++ TR        L G  +
Sbjct: 12  MRPSGRATDALRPVFIQTGFARHAEGSALIRMGGTEVLCAASVETR----VPSFLRGKGQ 67

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       A   R+ G      RL  R++  V    A    ++ +  
Sbjct: 68  GWVTAEYGMLPRATHSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDC 127

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL  A            VP+   VA ++ GL ++G     +
Sbjct: 128 DVLNADGGTRCAAITGAWVALRLALETLVRAGTLPAVPLKGQVAAVSCGLTQEG----AV 183

Query: 477 SDISGDEDHLGHMDFK-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D   V   D GI  +Q   +    +E      ++ A+ G   +    
Sbjct: 184 LDLDYAEDSTARADSNFVLTADGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQ 243

Query: 536 SKVLSES 542
           +  + E+
Sbjct: 244 TATVEEA 250


>gi|212694923|ref|ZP_03303051.1| hypothetical protein BACDOR_04460 [Bacteroides dorei DSM 17855]
 gi|212662483|gb|EEB23057.1| hypothetical protein BACDOR_04460 [Bacteroides dorei DSM 17855]
          Length = 747

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV       GLVH+SQL+ + V+  + VV     
Sbjct: 665 VKTIEDLTEGMEL-PGIVNNITNFGCFVDIGIKEKGLVHVSQLADKFVSDPTTVVSIHQH 723

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK++  D +R +I+L+MK ++Q
Sbjct: 724 VRVKVMSIDLERKRIQLTMKGLNQ 747


>gi|86605910|ref|YP_474673.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
 gi|86554452|gb|ABC99410.1| putative ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
          Length = 304

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            ++ +G+V  +  FG FV       GL+ I Q+S   VA  SD+ + G  +   ++D D+
Sbjct: 197 GQVVRGKVSALKPFGVFVELEEGGSGLLPIKQVSQSFVASLSDLFQPGQPLKAVVIDVDE 256

Query: 680 -RGKIKLSMKVVDQNTGK 696
            +G++ LS++V+++  G+
Sbjct: 257 AKGRVALSLRVLEKYPGE 274


>gi|313895897|ref|ZP_07829451.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975322|gb|EFR40783.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 248

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 21/244 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R +  + G  +   GS+L   G T+ +   ++    +E+    L G+   
Sbjct: 3   RRDLRRHDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSASV----EERVPFFLKGSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E +   A   R+ G      RL  RA+  V+   A    T+ I  +
Sbjct: 59  WVTAEYAMLPGAGTERTAREAMRGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA--------GV-PISKPVAGIAMGLVKDGDDFIILSDI 479
           + ++DG +  A++ G+ +AL++A        GV P+    A +++G+   G +   L DI
Sbjct: 119 VVQADGGTRTASITGAFVALVEACATFYTKRGVFPVRDYTAAVSVGI---GAENTPLLDI 175

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +ED    +D  +  T +G    +Q   +    S   M   L   +RG   +++   + 
Sbjct: 176 CYEEDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRA 235

Query: 539 LSES 542
           L E+
Sbjct: 236 LGET 239


>gi|307720840|ref|YP_003891980.1| 30S ribosomal protein S1P [Sulfurimonas autotrophica DSM 16294]
 gi|306978933|gb|ADN08968.1| SSU ribosomal protein S1P [Sulfurimonas autotrophica DSM 16294]
          Length = 552

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + DFGAFV   G  +GL+H   +S ++  K  DV+K GD V VK+   + D  KI
Sbjct: 376 GTVTSLTDFGAFVRIDGV-EGLLHNQDISWDKNTKAKDVLKSGDEVEVKIAKINEDEQKI 434

Query: 684 KLSMKVV 690
            L+ K +
Sbjct: 435 SLNRKTL 441



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G + K+  +G FV   G  DGLVH +++S +     S + KEGD V VK + +D D+
Sbjct: 201 IVEGVIKKITSYGMFVDVGGV-DGLVHYNEISYKGPVNPSKLYKEGDVVTVKAISYDKDK 259

Query: 681 GKIKLSMKVV 690
             + LS+K V
Sbjct: 260 RHLSLSIKAV 269


>gi|209693820|ref|YP_002261748.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
 gi|226736880|sp|B6EPI9|RNPH_ALISL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|208007771|emb|CAQ77892.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRTAQQVRPITITRHFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A S ++ G      RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD---DF 473
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G+ K G+   D 
Sbjct: 117 DVIQADGGTRTASITGASVALADAINHMIASGKLKKNPMKGHVAAVSVGIYK-GEAICDL 175

Query: 474 IILSDISGDED 484
             L D + D D
Sbjct: 176 EYLEDSAADTD 186


>gi|218129766|ref|ZP_03458570.1| hypothetical protein BACEGG_01345 [Bacteroides eggerthii DSM 20697]
 gi|317475886|ref|ZP_07935143.1| ribosomal protein S1 [Bacteroides eggerthii 1_2_48FAA]
 gi|217987876|gb|EEC54201.1| hypothetical protein BACEGG_01345 [Bacteroides eggerthii DSM 20697]
 gi|316908046|gb|EFV29743.1| ribosomal protein S1 [Bacteroides eggerthii 1_2_48FAA]
          Length = 597

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille]
 gi|151279916|gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I   ++    +++    L G  + 
Sbjct: 6   RPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASI----EDRVPGFLKGKGQG 61

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +T      E +R G  S R     RL  R++       A    TL +  
Sbjct: 62  WLTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  DA            +P+   VA I++G+ K G   +  
Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYK-GQPVL-- 177

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  DED     D  +  TD+G
Sbjct: 178 -DLDYDEDSDCDTDMNIVMTDAG 199


>gi|300311449|ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
 gi|124483528|emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae]
 gi|300074234|gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  E +R++       +   GS L   GDT+ +   ++    +E+    L G  + 
Sbjct: 6   RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASI----EEKVPGFLKGKGQG 61

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +T   +RM      G  S R     RL  RA+       A    TL++ 
Sbjct: 62  WLTAEYGMLPRSTH--TRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLD 119

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +A  DA            +P+   VA I++G+ K     + 
Sbjct: 120 CDVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKG----VP 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  TD+G
Sbjct: 176 VLDLDYPEDSDCDTDMNVVMTDAG 199


>gi|57167925|ref|ZP_00367065.1| ribosomal protein S1 VC1915 , putative [Campylobacter coli RM2228]
 gi|57021047|gb|EAL57711.1| ribosomal protein S1 VC1915 , putative [Campylobacter coli RM2228]
          Length = 556

 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I ++ +   + +G V K+  +G FV   G  DGLVH S++S +     S + KEGD V V
Sbjct: 196 INNIAQQEGLIEGVVKKITTYGMFVD-VGGVDGLVHYSEISYKGPVNPSILYKEGDKVPV 254

Query: 673 KLLDFD-DRGKIKLSMK 688
           K++ +D DR  + LS+K
Sbjct: 255 KVVKYDKDRKHLSLSIK 271


>gi|150005117|ref|YP_001299861.1| 30S ribosomal protein S1 [Bacteroides vulgatus ATCC 8482]
 gi|254883252|ref|ZP_05255962.1| 30S ribosomal protein S1 [Bacteroides sp. 4_3_47FAA]
 gi|294778927|ref|ZP_06744343.1| 30S ribosomal protein S1 [Bacteroides vulgatus PC510]
 gi|319642627|ref|ZP_07997273.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_40A]
 gi|149933541|gb|ABR40239.1| 30S ribosomal protein S1 [Bacteroides vulgatus ATCC 8482]
 gi|254836045|gb|EET16354.1| 30S ribosomal protein S1 [Bacteroides sp. 4_3_47FAA]
 gi|294447236|gb|EFG15820.1| 30S ribosomal protein S1 [Bacteroides vulgatus PC510]
 gi|317385715|gb|EFV66648.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_40A]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D D  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDRDER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|89901260|ref|YP_523731.1| RNA-binding S1 [Rhodoferax ferrireducens T118]
 gi|89345997|gb|ABD70200.1| RNA binding S1 [Rhodoferax ferrireducens T118]
          Length = 807

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQLS + V    ++VK GD
Sbjct: 673 VEDIKDLKE-GMVLEGTVSNVAAFGAFVDLGVHQDGLVHVSQLSHKFVTDAREIVKTGD 730


>gi|315292912|gb|EFU52264.1| ribonuclease PH [Escherichia coli MS 153-1]
          Length = 214

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|315122096|ref|YP_004062585.1| 30S ribosomal protein S1 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495498|gb|ADR52097.1| 30S ribosomal protein S1 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 576

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++
Sbjct: 172 IVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGIVKNITDYGAFVDLSGV-DGLLHVTDIA 230

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             R+   S V+  G  V V+++  + +  +I L MK +++N
Sbjct: 231 WHRIQHPSKVLSVGQQVKVQIIRINQETHRISLGMKQLEKN 271


>gi|305432049|ref|ZP_07401216.1| 30S ribosomal protein S1 [Campylobacter coli JV20]
 gi|304445133|gb|EFM37779.1| 30S ribosomal protein S1 [Campylobacter coli JV20]
          Length = 557

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I ++ +   + +G V K+  +G FV   G  DGLVH S++S +     S + KEGD V V
Sbjct: 197 INNIAQQEGLIEGVVKKITTYGMFVD-VGGVDGLVHYSEISYKGPVNPSILYKEGDKVPV 255

Query: 673 KLLDFD-DRGKIKLSMK 688
           K++ +D DR  + LS+K
Sbjct: 256 KVVKYDKDRKHLSLSIK 272


>gi|294501660|ref|YP_003565360.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|295707008|ref|YP_003600083.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294351597|gb|ADE71926.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
 gi|294804667|gb|ADF41733.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 133

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+  + KG+V  +  +GAFV       GLVHIS++    V   ++ +  GD V VK+L  
Sbjct: 5   EIGTVTKGKVTGIQPYGAFVALNEETQGLVHISEVKHGFVKDINEHLSVGDEVNVKVLSV 64

Query: 678 DDR-GKIKLSMKVVD 691
           D+  GKI LS++  +
Sbjct: 65  DESTGKIGLSIRATE 79


>gi|237711154|ref|ZP_04541635.1| 30S ribosomal protein S1 [Bacteroides sp. 9_1_42FAA]
 gi|237727518|ref|ZP_04557999.1| 30S ribosomal protein S1 [Bacteroides sp. D4]
 gi|265750743|ref|ZP_06086806.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_33FAA]
 gi|229434374|gb|EEO44451.1| 30S ribosomal protein S1 [Bacteroides dorei 5_1_36/D4]
 gi|229454998|gb|EEO60719.1| 30S ribosomal protein S1 [Bacteroides sp. 9_1_42FAA]
 gi|263237639|gb|EEZ23089.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_33FAA]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D D  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDRDER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|297528584|ref|YP_003669859.1| Tex-like protein protein-like protein [Geobacillus sp. C56-T3]
 gi|297251836|gb|ADI25282.1| Tex-like protein protein-like protein [Geobacillus sp. C56-T3]
          Length = 721

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D   V +   VWV+ +D   +G
Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVEHVDV-AKG 710

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 711 RISLSM 716


>gi|293375098|ref|ZP_06621388.1| general stress protein 13 [Turicibacter sanguinis PC909]
 gi|325840447|ref|ZP_08167046.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
 gi|292646292|gb|EFF64312.1| general stress protein 13 [Turicibacter sanguinis PC909]
 gi|325490314|gb|EGC92643.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+V  +  +GAFV      +GL+HIS+LS   V    D V  G+ + VK+L F+   
Sbjct: 8   IVRGKVTGIQPYGAFVQLSEDCNGLIHISELSDGYVKDIRDFVHIGEFIDVKVLKFNSES 67

Query: 682 -KIKLSMKVVDQNT 694
            + +LS++ V  N 
Sbjct: 68  LQARLSLRGVANNN 81


>gi|261418556|ref|YP_003252238.1| transcriptional accessory protein Tex [Geobacillus sp. Y412MC61]
 gi|319765370|ref|YP_004130871.1| Tex-like protein [Geobacillus sp. Y412MC52]
 gi|261375013|gb|ACX77756.1| Tex-like protein protein-like protein [Geobacillus sp. Y412MC61]
 gi|317110236|gb|ADU92728.1| Tex-like protein [Geobacillus sp. Y412MC52]
          Length = 721

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D   V +   VWV+ +D   +G
Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVEHVDV-AKG 710

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 711 RISLSM 716


>gi|150005421|ref|YP_001300165.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|149933845|gb|ABR40543.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
          Length = 709

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV       GLVH+SQL+ + V+  + VV     
Sbjct: 627 VKTIEDLTEGMEL-PGIVNNITNFGCFVDIGIKEKGLVHVSQLADKFVSDPTTVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK++  D +R +I+L+MK ++Q
Sbjct: 686 VRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|322369170|ref|ZP_08043735.1| translation initiation factor IF-2 subunit alpha [Haladaptatus
           paucihalophilus DX253]
 gi|320550902|gb|EFW92551.1| translation initiation factor IF-2 subunit alpha [Haladaptatus
           paucihalophilus DX253]
          Length = 266

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V ++ DFG FV      D  GLVH+S++++  +    D V  G TV  K+
Sbjct: 7   PDTGELVVGKVDEIEDFGVFVDLEEYEDKRGLVHVSEVASGWIKNVRDHVNTGQTVVCKV 66

Query: 675 LDFDDRG-KIKLSMKVVDQN 693
           LD D+   +I LS+K V+++
Sbjct: 67  LDVDEGSQQIDLSIKDVNEH 86


>gi|296122660|ref|YP_003630438.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
 gi|296015000|gb|ADG68239.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
          Length = 736

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G ++ V+DFGAFV        L+H+S++S + +    ++V  GD  TVWV  +D  +R 
Sbjct: 665 EGTILNVVDFGAFVDIGLKDSALIHVSKMSNQFIRNPHEIVSVGDRVTVWVADID-KERR 723

Query: 682 KIKLSM 687
           ++ LS+
Sbjct: 724 RVGLSL 729


>gi|212694510|ref|ZP_03302638.1| hypothetical protein BACDOR_04038 [Bacteroides dorei DSM 17855]
 gi|212663011|gb|EEB23585.1| hypothetical protein BACDOR_04038 [Bacteroides dorei DSM 17855]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D D  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDRDER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|150401132|ref|YP_001324898.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           aeolicus Nankai-3]
 gi|150013835|gb|ABR56286.1| translation initiation factor 2, alpha subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 262

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D PE  +I  G V+ V  FGAFV       ++G++H+S++S+  V    D VK+G  V  
Sbjct: 4   DFPEEGEIVIGTVIDVKPFGAFVELLDYPKKEGMIHVSEVSSGWVKNIRDFVKKGQRVVA 63

Query: 673 KLLDFDDR-GKIKLSMK-VVDQ 692
           K+     R  +I LS+K V DQ
Sbjct: 64  KVTRSQKRKSQIDLSLKRVTDQ 85


>gi|56418769|ref|YP_146087.1| hypothetical protein GK0234 [Geobacillus kaustophilus HTA426]
 gi|56378611|dbj|BAD74519.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 721

 Score = 44.7 bits (104), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D   V +   VWV+ +D   +G
Sbjct: 652 EGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVEHVDV-AKG 710

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 711 RISLSM 716


>gi|254884274|ref|ZP_05256984.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640643|ref|ZP_07995359.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
 gi|254837067|gb|EET17376.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387706|gb|EFV68569.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
          Length = 709

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV       GLVH+SQL+ + V+  + VV     
Sbjct: 627 VKTIEDLTEGMEL-PGIVNNITNFGCFVDIGIKEKGLVHVSQLADKFVSDPTTVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK++  D +R +I+L+MK ++Q
Sbjct: 686 VRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|169826215|ref|YP_001696373.1| general stress protein 13 (GSP13) [Lysinibacillus sphaericus C3-41]
 gi|168990703|gb|ACA38243.1| General stress protein 13 (GSP13) [Lysinibacillus sphaericus C3-41]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+  +  G+V  +  +GAFV       GLVHIS+++   V   S+ +  G  V VK+L+ 
Sbjct: 6   ELGDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVAVKILEI 65

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KI LSM+ + +
Sbjct: 66  DEEAEKISLSMRALQE 81


>gi|126652083|ref|ZP_01724272.1| hypothetical protein BB14905_11570 [Bacillus sp. B14905]
 gi|126591173|gb|EAZ85283.1| hypothetical protein BB14905_11570 [Bacillus sp. B14905]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+  +  G+V  +  +GAFV       GLVHIS+++   V   S+ +  G  V VK+L+ 
Sbjct: 6   ELGDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVEVKILEI 65

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KI LSM+ + +
Sbjct: 66  DEEAEKISLSMRALQE 81


>gi|23015735|ref|ZP_00055503.1| COG0539: Ribosomal protein S1 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 565

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I ++ E  +I +G V  + D+GAFV   G  DGL+H++ +
Sbjct: 174 IVVSRRAVLEETRAEQRSELIENLKE-GQILEGVVKNITDYGAFVDLGGV-DGLLHVTDI 231

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + +R+   S+ +  G TV V+++ F+ +  +I L +K +D +
Sbjct: 232 AWKRINHPSEALHIGQTVKVQVIRFNSETQRISLGIKQLDAD 273



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+  + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD 
Sbjct: 284 VDAKFSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDV 343

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + +I L +K    N
Sbjct: 344 DPQKRRISLGLKQTMNN 360



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           + +G++  + +FG F+   G  DG+VH+S L      + +    K+GD V  K+LD D +
Sbjct: 374 LVEGEIKNITEFGLFIGLPGDIDGMVHLSDLDWATPGEQAIQNFKKGDVVKAKVLDVDVE 433

Query: 680 RGKIKLSMK 688
           + +I L +K
Sbjct: 434 KERISLGIK 442


>gi|320352187|ref|YP_004193526.1| 30S ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
 gi|320120689|gb|ADW16235.1| SSU ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
          Length = 577

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A RE +R  T + E  +I +G +  + D+G F+   G  DGL HI+ LS  RV+  S + 
Sbjct: 195 ALREQMR--TSLQE-GQIIRGAITNITDYGLFIDL-GGMDGLCHITDLSWGRVSHPSKLY 250

Query: 665 KEGDTVWVKLLDFD 678
             G+ + VK+L +D
Sbjct: 251 TVGEEIEVKILKYD 264



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + +G++  + DFG F+      DGL+H+S LS TER+   S+   +G+T+   +L  
Sbjct: 378 VGSVIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPSEKYSKGETIQAVVLKI 437

Query: 678 D 678
           D
Sbjct: 438 D 438



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+G FV      +GLVHIS++S  +  +  S +V  G+ + V++L  +   K
Sbjct: 296 KGKVVSITDYGVFVELEEGVEGLVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAETK 355

Query: 683 -IKLSMKVVDQN 693
            I L MK +  N
Sbjct: 356 RISLGMKQLQPN 367



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           +G +  V DFG FV      +GLVH+S++S ++V     +    DT+   +++   DDR 
Sbjct: 470 EGTITNVTDFGVFVQLEEGIEGLVHVSEISKDKVKTPVGMFNVNDTLKAMVINVSADDR- 528

Query: 682 KIKLSMKVVDQ 692
           KI LS+K + +
Sbjct: 529 KIGLSVKALQE 539


>gi|167587066|ref|ZP_02379454.1| RNA binding S1 [Burkholderia ubonensis Bu]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +  I +G V  V  FGAFV     +DGLVH+S LST+ +    +VVK
Sbjct: 509 REGVEKVSDLVPGM--ILEGVVTNVAAFGAFVDVGVHQDGLVHVSALSTKFIKDPHEVVK 566

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVDQNT 694
            G       L     R +I L+M++ D  T
Sbjct: 567 AGQVVKVKVLDVDVKRQRISLTMRLDDDAT 596


>gi|329956977|ref|ZP_08297545.1| 30S ribosomal protein S1 [Bacteroides clarus YIT 12056]
 gi|328523734|gb|EGF50826.1| 30S ribosomal protein S1 [Bacteroides clarus YIT 12056]
          Length = 597

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|317136747|ref|XP_001727253.2| rRNA biogenesis protein RRP5 [Aspergillus oryzae RIB40]
          Length = 1818

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G++ KV +FGAF+   G+ +  GL H S+++  RV     V  EGD V  K+L  D
Sbjct: 1322 QIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKID 1381

Query: 679  DR-GKIKLSMK 688
             + GKI   +K
Sbjct: 1382 RKQGKISFGLK 1392


>gi|82779134|ref|YP_405483.1| ribonuclease PH [Shigella dysenteriae Sd197]
 gi|309784379|ref|ZP_07679018.1| ribonuclease PH [Shigella dysenteriae 1617]
 gi|123561122|sp|Q329L3|RNPH_SHIDS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81243282|gb|ABB63992.1| RNase PH [Shigella dysenteriae Sd197]
 gi|308927886|gb|EFP73354.1| ribonuclease PH [Shigella dysenteriae 1617]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACMALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|312113691|ref|YP_004011287.1| ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100]
 gi|311218820|gb|ADP70188.1| ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100]
          Length = 576

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V K+ +GQVV      + D+GAF+   G  DGL+H++ ++ +RV   ++++  GDTV V+
Sbjct: 202 VAKLEEGQVVDGVVKNITDYGAFIDLGGI-DGLLHVTDMAWKRVNHPTEILNVGDTVKVQ 260

Query: 674 LLDFD-DRGKIKLSMK 688
           ++  + +  +I L MK
Sbjct: 261 IVRINPETQRISLGMK 276



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +GQV  + +FG FV   G  DG+VH+S L   R  +  + +KE   GDTV   +L+ D +
Sbjct: 384 EGQVRNITEFGLFVGLEGGIDGMVHLSDLDWSRSGE--EAIKEYNKGDTVRAVVLETDPE 441

Query: 680 RGKIKLSMK 688
           + +I L +K
Sbjct: 442 KERISLGIK 450



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + D+GAFV      +GL+H+S++S  ++      +V     V V++L+ D  +
Sbjct: 296 FTGTVTNIADYGAFVELEPGVEGLIHVSEMSWVKKNVHPGKIVSTSQEVEVQVLEVDASK 355

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   +N
Sbjct: 356 RRISLGLKQTQEN 368


>gi|294777759|ref|ZP_06743206.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
 gi|294448403|gb|EFG16956.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
          Length = 709

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV       GLVH+SQL+ + V+  + VV     
Sbjct: 627 VKTIEDLTEGMEL-PGIVNNITNFGCFVDIGIKEKGLVHVSQLADKFVSDPTTVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK++  D +R +I+L+MK ++Q
Sbjct: 686 VRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|237710734|ref|ZP_04541215.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727122|ref|ZP_04557603.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265750408|ref|ZP_06086471.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229433978|gb|EEO44055.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455456|gb|EEO61177.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237304|gb|EEZ22754.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 709

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  ++  G V  + +FG FV       GLVH+SQL+ + V+  + VV     
Sbjct: 627 VKTIEDLTEGMEL-PGIVNNITNFGCFVDIGIKEKGLVHVSQLADKFVSDPTTVVSIHQH 685

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           V VK++  D +R +I+L+MK ++Q
Sbjct: 686 VRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|160892252|ref|ZP_02073255.1| hypothetical protein BACUNI_04716 [Bacteroides uniformis ATCC 8492]
 gi|270296131|ref|ZP_06202331.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480708|ref|ZP_07939794.1| ribosomal protein S1 [Bacteroides sp. 4_1_36]
 gi|156858730|gb|EDO52161.1| hypothetical protein BACUNI_04716 [Bacteroides uniformis ATCC 8492]
 gi|270273535|gb|EFA19397.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903049|gb|EFV24917.1| ribosomal protein S1 [Bacteroides sp. 4_1_36]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|83770281|dbj|BAE60414.1| unnamed protein product [Aspergillus oryzae]
          Length = 1827

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G++ KV +FGAF+   G+ +  GL H S+++  RV     V  EGD V  K+L  D
Sbjct: 1331 QIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKID 1390

Query: 679  DR-GKIKLSMK 688
             + GKI   +K
Sbjct: 1391 RKQGKISFGLK 1401


>gi|296113088|ref|YP_003627026.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
 gi|295920782|gb|ADG61133.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
 gi|326560081|gb|EGE10471.1| 30S ribosomal protein S1 [Moraxella catarrhalis 46P47B1]
 gi|326561667|gb|EGE12004.1| 30S ribosomal protein S1 [Moraxella catarrhalis 103P14B1]
 gi|326571140|gb|EGE21164.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC7]
 gi|326573434|gb|EGE23402.1| 30S ribosomal protein S1 [Moraxella catarrhalis 101P30B1]
 gi|326575670|gb|EGE25593.1| 30S ribosomal protein S1 [Moraxella catarrhalis CO72]
          Length = 557

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 601 AEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           AE  A R E++  + +  EV  I K     + ++GAFV   G  DGL+HI+ ++ +R+  
Sbjct: 177 AENSAERDELLAKLEEGMEVEGIVK----NLTEYGAFVDLGGI-DGLLHITDMAWKRIKH 231

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S+ V+ G  + VK+L FD +R ++ L +K
Sbjct: 232 PSEAVEVGQDLKVKVLKFDRERNRVSLGLK 261



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I K +V  + D+G F       +GLVH+S++  T +    S VV+ GD V V +L+ 
Sbjct: 277 VGTITKARVTNLTDYGCFAEIAEGIEGLVHVSEMDHTNKNIHPSKVVQVGDEVNVMVLEI 336

Query: 678 D-DRGKIKLSMK 688
           D +R +I L +K
Sbjct: 337 DGERRRISLGIK 348


>gi|317050112|ref|YP_004117760.1| ribonuclease PH [Pantoea sp. At-9b]
 gi|316951729|gb|ADU71204.1| ribonuclease PH [Pantoea sp. At-9b]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   G+T+ +   T+    DE     L G  +
Sbjct: 1   MRPAGRHTNQVRPVTLTRHYTKHAEGSVLVEFGETKVLCTATV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G    R +   RL  R++   +   A   YT+ +
Sbjct: 57  GWVTAEYGMLPRSTH--SRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLQALGEYTITL 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVK 468
             ++ ++DG +  A++ G+ +AL DA             P+   VA I++G+V+
Sbjct: 115 DCDVIQADGGTRTASITGACVALADALNKLVADGKLKSSPLKGMVAAISVGIVE 168


>gi|253569882|ref|ZP_04847291.1| 30S ribosomal protein S1 [Bacteroides sp. 1_1_6]
 gi|251840263|gb|EES68345.1| 30S ribosomal protein S1 [Bacteroides sp. 1_1_6]
          Length = 599

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIATGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|198276788|ref|ZP_03209319.1| hypothetical protein BACPLE_02991 [Bacteroides plebeius DSM 17135]
 gi|198270313|gb|EDY94583.1| hypothetical protein BACPLE_02991 [Bacteroides plebeius DSM 17135]
          Length = 594

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++    I+ + E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQKKEIISKL-EKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV     + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPREVVSLDQKLNVVILDFDDEKKRIALGLK 282



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|222824189|ref|YP_002575763.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
 gi|222539411|gb|ACM64512.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
          Length = 517

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I++V    +I +G V K+  +G FV   G  DGLVH S++S +     S +  EGD V V
Sbjct: 195 ISNVLNQEEIIEGIVKKITTYGMFVD-VGGVDGLVHYSEISYKGPVNPSSLYNEGDKVPV 253

Query: 673 KLLDFD-DRGKIKLSMKV 689
           K++ +D D+  + LS+K+
Sbjct: 254 KVIKYDKDKKHLSLSIKL 271



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG V  V +FGAFV      +GL+H    S  R  K  D+ K GD + VK++  
Sbjct: 372 KVGDVVKGSVTSVTNFGAFVKIANL-EGLLHNEDASWNRNDKCKDMYKVGDVIEVKIIKL 430

Query: 678 D-DRGKIKLSMK 688
           D +  KI LS K
Sbjct: 431 DKENQKISLSTK 442


>gi|238488517|ref|XP_002375496.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
 gi|220697884|gb|EED54224.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
          Length = 1827

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G++ KV +FGAF+   G+ +  GL H S+++  RV     V  EGD V  K+L  D
Sbjct: 1331 QIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKID 1390

Query: 679  DR-GKIKLSMK 688
             + GKI   +K
Sbjct: 1391 RKQGKISFGLK 1401


>gi|258573391|ref|XP_002540877.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901143|gb|EEP75544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1819

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V KV +FGAFV   G  +  GL H S+++ ++VA    + ++GD V  K+L  D
Sbjct: 1320 QIVTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKILKVD 1379

Query: 679  -DRGKIKLSMKV 689
             ++ +I L +K 
Sbjct: 1380 TEKAQISLGLKA 1391


>gi|332364567|gb|EGJ42336.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059]
          Length = 120

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++    +    D VK    V V+++D+D+  GK
Sbjct: 8   KGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKISQQVLVQVVDYDEFSGK 67

Query: 683 IKLSMKVVDQ 692
             LSM+ +++
Sbjct: 68  SSLSMRTLEE 77


>gi|257875608|ref|ZP_05655261.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
 gi|257809774|gb|EEV38594.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
          Length = 728

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           KG V  V+DFGAFV     +DGLVH+S+LS   V    D   V +  TVW++ +D   +G
Sbjct: 657 KGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHPKDVVSVGDVVTVWIEQVDV-KKG 715

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+M  VD    K
Sbjct: 716 RISLTM--VDPGNAK 728


>gi|62182227|ref|YP_218644.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75479865|sp|Q57I99|RNPH_SALCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62129860|gb|AAX67563.1| RNase PH [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|322716715|gb|EFZ08286.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVVQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIV-NGE---AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|182679167|ref|YP_001833313.1| RNA-binding S1 domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635050|gb|ACB95824.1| RNA binding S1 domain protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 766

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +G V  V +FGAFV     +DGLVHISQL+   V + +D+VK G
Sbjct: 655 EGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAG 698


>gi|313202750|ref|YP_004041407.1| SSU ribosomal protein s1p [Paludibacter propionicigenes WB4]
 gi|312442066|gb|ADQ78422.1| SSU ribosomal protein S1P [Paludibacter propionicigenes WB4]
          Length = 682

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +K GD V   +L  D D  
Sbjct: 351 KGKVVVMADYGAFVEIAAGVEGLIHVSEMSWSQHLRSAQDFLKVGDEVETVILTLDRDER 410

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 411 KMSLGIK 417



 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           + K+ KGQV++     +  +G F+   G  DGL+HI+ LS  RV+   ++V     + V 
Sbjct: 256 IGKLQKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITDLSWGRVSHPEEIVTLDQKLNVV 314

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFDD  K I L +K
Sbjct: 315 ILDFDDEKKRIALGLK 330


>gi|268323238|emb|CBH36826.1| DNA-directed RNA polymerase subunit E' [uncultured archaeon]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 16/95 (16%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           P++ +I +G VV++++FGAFV   G  DGL+HISQ++ E ++            TS  + 
Sbjct: 79  PKMQEIVEGAVVEIVEFGAFVE-IGPLDGLLHISQITDEYISYDEKGAKLVTKDTSRTLG 137

Query: 666 EGDTVWVKL----LDFDDRGKIKLSMKVVDQNTGK 696
           EGD V  ++    L+  D G  K+ + +     GK
Sbjct: 138 EGDKVRARIVAISLNERDPGDSKIGLTMRQPGLGK 172


>gi|257865981|ref|ZP_05645634.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257872314|ref|ZP_05651967.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257799915|gb|EEV28967.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257806478|gb|EEV35300.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
          Length = 728

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           KG V  V+DFGAFV     +DGLVH+S+LS   V    D   V +  TVW++ +D   +G
Sbjct: 657 KGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHPKDVVSVGDVVTVWIEQVDV-KKG 715

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+M  VD    K
Sbjct: 716 RISLTM--VDPGNAK 728


>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
 gi|150843771|gb|EDN18964.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
          Length = 261

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R ++AQ+     + GSS    G+TQ +  VT     D   + S+ G   
Sbjct: 13  LRLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVT--GPCDPSKLRSIGGGGS 70

Query: 372 ND------FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           N+        +  +F   A  +  + G   +R             P L  T     T+ I
Sbjct: 71  NNAGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILI 130

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVP----ISKPVAGIAMGLVKDGDDFIILSDIS- 480
              I   DGS   A +  S+LAL+DAG+P    I    AG       + +    L D++ 
Sbjct: 131 SLHILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNL 190

Query: 481 GDEDHLGHMDFKVAGT--DSGITAMQMDMKI-GGISENIMVMALQQAKRGR 528
           G+E  L  +    AG     G+ A+ M+ ++  G  E ++ + +   K+ R
Sbjct: 191 GEEQELPFLTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVR 241


>gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA       G+    P+   VA +++G + +G+    +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAIHYMLEKGMIKKNPLKTMVAAVSVG-IYNGEP---I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK G   I+ + 
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQ 232

Query: 536 SKVLS 540
            + L+
Sbjct: 233 KQALA 237


>gi|77409732|ref|ZP_00786392.1| ribosomal protein S1 [Streptococcus agalactiae COH1]
 gi|77171660|gb|EAO74869.1| ribosomal protein S1 [Streptococcus agalactiae COH1]
          Length = 103

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           DGLVHISQ+S +RV    DV+  G  V VK+L+ + D  ++ LSMK +++   +
Sbjct: 6   DGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDAERVSLSMKALEERPAQ 59


>gi|189502053|ref|YP_001957770.1| 30S ribosomal protein S1 [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497494|gb|ACE06041.1| hypothetical protein Aasi_0644 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 611

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           E+    KG++V + D+GAF+      +GL+HIS++S ++ + K  +VV  GD +   +L 
Sbjct: 294 EIGAKVKGKIVNIADYGAFLEIMPGIEGLIHISEMSWSQHLKKVEEVVHIGDEIEAIVLS 353

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  K+ L +K + Q+
Sbjct: 354 LDKEEKKMSLGIKQLTQD 371



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQ+++     +  FG FV   G  DGL+HI+ ++  R+    +V++ G  + V 
Sbjct: 205 LSKLEKGQILEGIVKNMTSFGVFVGLGGI-DGLLHITDIAWRRITHPEEVLELGQKIKVV 263

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           + DFD +R +I L MK +  N
Sbjct: 264 VTDFDEERKRISLGMKQLTPN 284



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           G +  +  FGA +      DGL+HIS LS T+++   +D++K GD + + +L+FD    +
Sbjct: 390 GTIKNITHFGALMELEEGIDGLLHISDLSWTKKINHPTDMLKLGDKLELLILEFDKENRR 449

Query: 683 IKLSMKVVDQN 693
           + L +K +++N
Sbjct: 450 LSLGLKQLEEN 460


>gi|71083198|ref|YP_265917.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762372|ref|ZP_01264337.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062311|gb|AAZ21314.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718174|gb|EAS84824.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1002]
          Length = 576

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           E+NKIYK +VVK+MDFGAF         L+H S+LS T++      + K GD +   + +
Sbjct: 290 ELNKIYKVKVVKLMDFGAFCELEKGLSTLLHSSELSWTKKNISAKKMFKVGDEIDCVITE 349

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D ++ ++ +S ++   N
Sbjct: 350 IDKEKRRVAISHRLTTDN 367


>gi|29349753|ref|NP_813256.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341663|gb|AAO79450.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482]
          Length = 599

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIATGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379


>gi|83313360|ref|YP_423624.1| 30S ribosomal protein S1 [Magnetospirillum magneticum AMB-1]
 gi|82948201|dbj|BAE53065.1| Ribosomal protein S1 [Magnetospirillum magneticum AMB-1]
          Length = 565

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I ++ E  +I +G V  + D+GAFV   G  DGL+H++ +
Sbjct: 174 IVVSRRAVLEETRAEQRSELIENLKE-GQILEGVVKNITDYGAFVDLGGV-DGLLHVTDI 231

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + +R+   S+ +  G TV V+++ F+ +  +I L +K +D +
Sbjct: 232 AWKRINHPSEALHIGQTVKVQVIRFNSETQRISLGIKQLDAD 273



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN  + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD 
Sbjct: 284 VNAKFSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDV 343

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + +I L +K    N
Sbjct: 344 DPQKRRISLGLKQTMNN 360



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           + +G++  + +FG F+   G  DG+VH+S L      + +    K+GD V  K+LD D +
Sbjct: 374 LVEGEIKNITEFGLFIGLPGDIDGMVHLSDLDWATPGEQAIQNFKKGDVVKAKVLDVDVE 433

Query: 680 RGKIKLSMK 688
           + +I L +K
Sbjct: 434 KERISLGIK 442


>gi|294807103|ref|ZP_06765921.1| 30S ribosomal protein S1 [Bacteroides xylanisolvens SD CC 1b]
 gi|294445669|gb|EFG14318.1| 30S ribosomal protein S1 [Bacteroides xylanisolvens SD CC 1b]
          Length = 565

 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV+    + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+  + I
Sbjct: 363 KMSLGIKQLKQDPWETI 379



 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  +V    +FG FV      DGL+HIS LS T++V   S+  + G  + V++L+ D D 
Sbjct: 389 HTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKDN 448

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 449 RRLSLGHKQLEEN 461


>gi|113866973|ref|YP_725462.1| ribonuclease PH [Ralstonia eutropha H16]
 gi|123134290|sp|Q0KD27|RNPH_RALEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113525749|emb|CAJ92094.1| Ribonuclease PH [Ralstonia eutropha H16]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++  +          G+  
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   A   ++ G      RL  RA+  V    A   YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAVSTMLRDGLIAASPIRDHVAAVSVGMV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 173 LDLDYAEDSSCDTDMNVVMTGSG 195


>gi|114568652|ref|YP_755332.1| 30S ribosomal protein S1 [Maricaulis maris MCS10]
 gi|114339114|gb|ABI64394.1| SSU ribosomal protein S1P [Maricaulis maris MCS10]
          Length = 566

 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+H++ +S  RV   S+VV+ G TV V+++  + +  +I
Sbjct: 204 GVVKNITDYGAFVDLGGI-DGLLHVTDMSWSRVGHPSEVVEVGQTVKVQIIKINKETQRI 262

Query: 684 KLSMK 688
            L MK
Sbjct: 263 SLGMK 267



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V   ++G+V  + ++GAFV      +GLVH+S++S T++      ++     V V +LD 
Sbjct: 283 VGATFEGRVTNIAEYGAFVELEEGVEGLVHVSEMSWTKKNVHPGKILSTSQEVQVMVLDV 342

Query: 678 D-DRGKIKLSMKVVDQN 693
           D D+ +I L +K   +N
Sbjct: 343 DADKRRISLGVKQTQRN 359



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G++  + +FG FV   G  DG+VH+S +S ++  + + +  K+GD V  K+LD D ++ 
Sbjct: 375 QGEIKNITEFGLFVGLEGDIDGMVHLSDISWDQSGEQAIEGFKKGDMVDAKVLDVDVEKE 434

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K   Q  G P+
Sbjct: 435 RVSLGIK---QLAGDPM 448


>gi|328949378|ref|YP_004366715.1| RNA binding S1 domain protein [Treponema succinifaciens DSM 2489]
 gi|328449702|gb|AEB15418.1| RNA binding S1 domain protein [Treponema succinifaciens DSM 2489]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           D P   KI +G + +V DFG FV+     DGLVHIS+L+ ER      + K G+
Sbjct: 258 DFPAGTKI-EGTISRVTDFGIFVNIASGIDGLVHISKLNVERNTNLKKIYKPGE 310


>gi|289192469|ref|YP_003458410.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938919|gb|ADC69674.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 263

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK G  V  
Sbjct: 4   EFPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVA 63

Query: 673 KLLDFDDR-GKIKLSMK-VVDQN 693
           K+L  D+R G I LS+K V DQ 
Sbjct: 64  KVLRVDERKGHIDLSLKRVTDQQ 86


>gi|237752568|ref|ZP_04583048.1| 30s ribosomal protein s1 [Helicobacter winghamensis ATCC BAA-430]
 gi|229376057|gb|EEO26148.1| 30s ribosomal protein s1 [Helicobacter winghamensis ATCC BAA-430]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           N   +G+V K+  FG FV   G  +GLVH +++S +     S + KE D V +K+L++D 
Sbjct: 205 NGTLEGKVKKITSFGMFVDVNGV-EGLVHYTEISYKGPVNPSKLYKEDDIVPIKVLNYDK 263

Query: 679 DRGKIKLSMKVVDQNTGKPI 698
           D+ ++ LS+K   ++  + +
Sbjct: 264 DKRRLALSIKATAEDPWREV 283



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++ KG V  + DFGAFV   G  DGL+H       +  K  D++K G++V VK+    DR
Sbjct: 378 EVLKGVVATLTDFGAFVKLDGI-DGLLHNEDAYWNKNEKCKDLMKIGESVEVKIAKI-DR 435

Query: 681 GKIKLSM 687
            K ++S+
Sbjct: 436 QKERVSL 442


>gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
 gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
          Length = 236

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 23/231 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R ++ + G+ +   GS L   GDT  +   ++    +++    L  T  
Sbjct: 1   MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTASI----EDRPPPFLRNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R  A + ++ G      RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PV+ ++ G+   G   +  
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMQAGDVTSDPLGDPVSAVSCGIYA-GQPVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D+   ED +  +D     T   +  +QM  +    S + +   L  A+RG
Sbjct: 174 -DLDYPEDSVAGVDGNFVMTGGRMIEVQMSAEGATFSRDELEQLLGLAERG 223



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 26/176 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+ +ETG + + ++G+ L   G+T VL T     S++D    F         T   G +
Sbjct: 12  RPVTIETG-VTKHAEGSCLIKMGDTHVLCTA----SIEDRPPPFLRNTGLGWVTAEYGML 66

Query: 74  P---GGYLRRESRPTEN---EILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
           P   G  +RRE+   +     + I R+I RS+R    +    E Q+ +  +V+Q D    
Sbjct: 67  PRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDCDVLQAD--GG 124

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
               S+     AL L           +  P   PV         GQ VL+    ED
Sbjct: 125 TRCASITGGWVALRLAVNKLMQAGDVTSDPLGDPVSAVSCGIYAGQPVLDLDYPED 180


>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
 gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
          Length = 259

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +RD++  +       GS+L   G TQ +V V  G RE +Q   S S   R 
Sbjct: 14  RSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSV-YGPREPKQR--SQSAHDRA 70

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEITE 431
              +     P ++GE  + G   +R        ++   PV+  T+ +P  T+ +   I +
Sbjct: 71  TINVEVGTAPFSSGERRKRGRGDKRTQELCYTVQQTFEPVV-LTSIYPRSTIDVFITILQ 129

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            DGS   A +  ++LAL+ AGVP+   V  ++ G V D +  + L+ +
Sbjct: 130 QDGSLIPACINATTLALICAGVPLLDFVCAVSAG-VHDTESMLDLTTL 176


>gi|256618890|ref|ZP_05475736.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256598417|gb|EEU17593.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|257089716|ref|ZP_05584077.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|312904062|ref|ZP_07763230.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|256998528|gb|EEU85048.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|310632538|gb|EFQ15821.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|315578409|gb|EFU90600.1| S1 RNA binding domain protein [Enterococcus faecalis TX0630]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|167626670|ref|YP_001677170.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043763|sp|B0U040|RNPH_FRAP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167596671|gb|ABZ86669.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 235

 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ +   ++         DS  G   
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  T     T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA               P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ G+  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|332299016|ref|YP_004440938.1| Tex-like protein [Treponema brennaborense DSM 12168]
 gi|332182119|gb|AEE17807.1| Tex-like protein [Treponema brennaborense DSM 12168]
          Length = 813

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G++  V+DFGAFV        L+HIS+LS   V    +V+K GD     ++  D DR +I
Sbjct: 651 GKIKNVVDFGAFVDLGIKETALLHISELSDSFVTDPMEVLKVGDIKECTIIGLDADRRRI 710

Query: 684 KLSMK 688
            LS+K
Sbjct: 711 SLSLK 715


>gi|325570064|ref|ZP_08145989.1| YhgF like protein [Enterococcus casseliflavus ATCC 12755]
 gi|325156892|gb|EGC69063.1| YhgF like protein [Enterococcus casseliflavus ATCC 12755]
          Length = 728

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           KG V  V+DFGAFV     +DGLVH+S+LS   V    D   V +  TVW++ +D   +G
Sbjct: 657 KGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHPKDVVSVGDVVTVWIEQVDV-KKG 715

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 716 RISLTM 721


>gi|315636507|ref|ZP_07891743.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
 gi|315479156|gb|EFU69853.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
          Length = 701

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 610 IRSITDVPEVNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++   D+ ++N + +G V+      + DFGAFV      D L+HISQ+S +R++  SDV+
Sbjct: 616 VKFANDILDINDLKEGYVLSGIVRNITDFGAFVDIGLKNDALLHISQISEKRISHASDVL 675

Query: 665 KEGDTVW-VKLLDFD-DRGKIKLSMK 688
                +  +K++  D ++ ++ LS+K
Sbjct: 676 SINQNLENLKVISVDLEKQRVGLSLK 701


>gi|315170000|gb|EFU14017.1| S1 RNA binding domain protein [Enterococcus faecalis TX1342]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|294784341|ref|ZP_06749632.1| S1 RNA binding domain protein [Fusobacterium sp. 3_1_27]
 gi|294487913|gb|EFG35268.1| S1 RNA binding domain protein [Fusobacterium sp. 3_1_27]
          Length = 721

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + +K+ D D DRG+
Sbjct: 655 EGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKIKIKDVDKDRGR 714

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 715 VGLTRK 720


>gi|225857163|ref|YP_002738674.1| hypothetical protein SPP_1560 [Streptococcus pneumoniae P1031]
 gi|225724940|gb|ACO20792.1| S1-type RNA-binding domain protein [Streptococcus pneumoniae P1031]
          Length = 128

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++++S T +   +K+ KG++  +  +GAFV       GL+HIS++ T  +    + +K  
Sbjct: 2   KLLKSRTKMKIGDKL-KGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVD 60

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           + V V++LD D+  GK  LS++ +++
Sbjct: 61  EEVQVQVLDLDEFTGKASLSIRTLEE 86


>gi|218440421|ref|YP_002378750.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7424]
 gi|218173149|gb|ACK71882.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 196 EVGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDELKVMIIDL 254

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 255 DAERGRISLSTKQLEPEAG 273


>gi|29375880|ref|NP_815034.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis
           V583]
 gi|227518574|ref|ZP_03948623.1| S1 domain RNA-binding protein [Enterococcus faecalis TX0104]
 gi|227553102|ref|ZP_03983151.1| S1 domain RNA-binding protein [Enterococcus faecalis HH22]
 gi|29343342|gb|AAO81104.1| S1 RNA binding domain protein [Enterococcus faecalis V583]
 gi|227073993|gb|EEI11956.1| S1 domain RNA-binding protein [Enterococcus faecalis TX0104]
 gi|227177767|gb|EEI58739.1| S1 domain RNA-binding protein [Enterococcus faecalis HH22]
 gi|315575631|gb|EFU87822.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309B]
 gi|315579927|gb|EFU92118.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309A]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|144898831|emb|CAM75695.1| 30S ribosomal protein S1 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I ++ E  +I +G V  + D+GAFV   G  DGL+H++ +
Sbjct: 167 IVVSRRAVLEETRAEQRSELIENLKE-GQILEGVVKNITDYGAFVDLGGV-DGLLHVTDI 224

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + +R+   S+ +  G TV V+++ F+ +  +I L +K +D +
Sbjct: 225 AWKRINHPSEALHIGQTVKVQVIRFNPETQRISLGIKQLDAD 266



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDF 677
           V  + +G+V  + +FG F+   G  DG+VH+S LS ++    +    K+GD V  K+LD 
Sbjct: 364 VGTLVEGEVKNITEFGLFIGLSGDIDGMVHMSDLSWDKSGDAAIAEYKKGDVVNAKVLDV 423

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 424 DVEKERISLGIK 435



 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 281 FVGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDVDPQK 340

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 341 RRISLGLK 348


>gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Oceanobacter sp. RED65]
 gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +RD+       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASV----ENKVPPFLRGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +TG  SRM      G    R +   RL  R++   +   A    ++ I
Sbjct: 57  GWVTAEYGMLPRSTG--SRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA             P+   +A +++G V +G   +
Sbjct: 115 DCDVIQADGGTRCASITGACVALADAINSMIEAGTLKASPLKYMIAAVSVG-VYEGQAIL 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED     D  V   D+G
Sbjct: 174 ---DLDYPEDSNAETDLNVIMADNG 195


>gi|78065577|ref|YP_368346.1| ribonuclease PH [Burkholderia sp. 383]
 gi|123569063|sp|Q39IL4|RNPH_BURS3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77966322|gb|ABB07702.1| RNAse PH [Burkholderia sp. 383]
          Length = 243

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 32/234 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ +   ++     E+  D L    + 
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVLCTASV----SERVPDFLRDRGQG 62

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD--DFII 475
           + ++DG +  A++ G+ +A  DA             PI+  VA I++G+ +     D   
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKITRSPITDHVAAISVGVYEGAPVLDLDY 182

Query: 476 LSDISGDED----HLGHMDF-KVAGTDSGITAMQ------MDMKIGGISENIMV 518
             D   D D      G   F +V GT  G+   +      +D+  GGI+E + +
Sbjct: 183 AEDSQCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQL 236


>gi|18977512|ref|NP_578869.1| translation initiation factor IF-2 subunit alpha [Pyrococcus
           furiosus DSM 3638]
 gi|23821748|sp|Q8U1R5|IF2A_PYRFU RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|18893219|gb|AAL81264.1| translation initiation factor eIF-2, subunit alpha [Pyrococcus
           furiosus DSM 3638]
          Length = 275

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  ++    V +V ++GAF+       ++G +HIS++++  V    D ++E
Sbjct: 1   MPRRAREYPEEGELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLRE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V  K++  D  +G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPKKGHIDLSLRRVTQQQRK 91


>gi|30065081|ref|NP_839252.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|56480393|ref|NP_709422.2| ribonuclease PH [Shigella flexneri 2a str. 301]
 gi|110807680|ref|YP_691200.1| ribonuclease PH [Shigella flexneri 5 str. 8401]
 gi|157163124|ref|YP_001460442.1| ribonuclease PH [Escherichia coli HS]
 gi|170018127|ref|YP_001723081.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194435850|ref|ZP_03067953.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253771516|ref|YP_003034347.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163571|ref|YP_003046679.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|260857962|ref|YP_003231853.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|260870373|ref|YP_003236775.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|297518127|ref|ZP_06936513.1| ribonuclease PH [Escherichia coli OP50]
 gi|300907685|ref|ZP_07125313.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300923429|ref|ZP_07139469.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300927927|ref|ZP_07143486.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|301303877|ref|ZP_07209996.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|301325325|ref|ZP_07218832.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|312972072|ref|ZP_07786246.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|61216048|sp|Q83PN2|RNPH_SHIFL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123047760|sp|Q0SYH0|RNPH_SHIF8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991084|sp|A8A6A5|RNPH_ECOHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043762|sp|B1IYV7|RNPH_ECOLC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30043342|gb|AAP19063.1| RNase PH [Shigella flexneri 2a str. 2457T]
 gi|56383944|gb|AAN45129.2| RNase PH [Shigella flexneri 2a str. 301]
 gi|110617228|gb|ABF05895.1| RNase PH [Shigella flexneri 5 str. 8401]
 gi|157068804|gb|ABV08059.1| ribonuclease PH [Escherichia coli HS]
 gi|169753055|gb|ACA75754.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194425393|gb|EDX41377.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253322560|gb|ACT27162.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975472|gb|ACT41143.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|253979628|gb|ACT45298.1| ribonuclease PH [Escherichia coli BL21(DE3)]
 gi|257756611|dbj|BAI28113.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|257766729|dbj|BAI38224.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|281603006|gb|ADA75990.1| Ribonuclease PH [Shigella flexneri 2002017]
 gi|300400621|gb|EFJ84159.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300420256|gb|EFK03567.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300464019|gb|EFK27512.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|300840840|gb|EFK68600.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|300847852|gb|EFK75612.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|309704045|emb|CBJ03391.1| ribonuclease PH [Escherichia coli ETEC H10407]
 gi|310334449|gb|EFQ00654.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|313647483|gb|EFS11933.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|313848787|emb|CAQ33969.2| rph [Escherichia coli BL21(DE3)]
 gi|315254030|gb|EFU33998.1| ribonuclease PH [Escherichia coli MS 85-1]
 gi|320201331|gb|EFW75912.1| Ribonuclease PH [Escherichia coli EC4100B]
 gi|323155294|gb|EFZ41477.1| ribonuclease PH [Escherichia coli EPECa14]
 gi|323173236|gb|EFZ58865.1| ribonuclease PH [Escherichia coli LT-68]
 gi|323179387|gb|EFZ64954.1| ribonuclease PH [Escherichia coli 1180]
 gi|323944096|gb|EGB40176.1| ribonuclease PH [Escherichia coli H120]
 gi|323959891|gb|EGB55539.1| ribonuclease PH [Escherichia coli H489]
 gi|323971285|gb|EGB66530.1| ribonuclease PH [Escherichia coli TA007]
 gi|332750601|gb|EGJ81009.1| ribonuclease PH [Shigella flexneri 4343-70]
 gi|332751354|gb|EGJ81757.1| ribonuclease PH [Shigella flexneri 2747-71]
 gi|332764155|gb|EGJ94392.1| ribonuclease PH [Shigella flexneri 2930-71]
 gi|332996132|gb|EGK15759.1| ribonuclease PH [Shigella flexneri VA-6]
 gi|332997420|gb|EGK17036.1| ribonuclease PH [Shigella flexneri K-218]
 gi|332997778|gb|EGK17389.1| ribonuclease PH [Shigella flexneri K-272]
 gi|333012908|gb|EGK32285.1| ribonuclease PH [Shigella flexneri K-304]
 gi|333013313|gb|EGK32685.1| ribonuclease PH [Shigella flexneri K-227]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|329906685|ref|ZP_08274481.1| SSU ribosomal protein S1p [Oxalobacteraceae bacterium IMCC9480]
 gi|327547180|gb|EGF32041.1| SSU ribosomal protein S1p [Oxalobacteraceae bacterium IMCC9480]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 274 PQSTRLF-GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVL 332

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 333 EIDEERRRISLGMKQCKAN 351



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L +D ++
Sbjct: 193 VVTGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLTVGQEITAKVLKYDQEK 251

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 252 NRVSLGVK 259



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS TE   +     K+GD +   +L  D +R 
Sbjct: 367 RGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRRFKKGDELEAIVLAIDVERE 426

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K   Q  G P 
Sbjct: 427 RVSLGVK---QLEGDPF 440


>gi|257082728|ref|ZP_05577089.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|256990758|gb|EEU78060.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|256965294|ref|ZP_05569465.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|257086657|ref|ZP_05581018.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|257415932|ref|ZP_05592926.1| RNA binding protein S1 [Enterococcus faecalis AR01/DG]
 gi|257419130|ref|ZP_05596124.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|300860048|ref|ZP_07106136.1| Tex-like protein N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307273397|ref|ZP_07554642.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|256955790|gb|EEU72422.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|256994687|gb|EEU81989.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|257157760|gb|EEU87720.1| RNA binding protein S1 [Enterococcus faecalis ARO1/DG]
 gi|257160958|gb|EEU90918.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|295112847|emb|CBL31484.1| Transcriptional accessory protein [Enterococcus sp. 7L76]
 gi|300850866|gb|EFK78615.1| Tex-like protein N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306509924|gb|EFM78949.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|315027448|gb|EFT39380.1| S1 RNA binding domain protein [Enterococcus faecalis TX2137]
 gi|315145621|gb|EFT89637.1| S1 RNA binding domain protein [Enterococcus faecalis TX2141]
 gi|315160293|gb|EFU04310.1| S1 RNA binding domain protein [Enterococcus faecalis TX0645]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|237741053|ref|ZP_04571534.1| transcription accessory protein [Fusobacterium sp. 4_1_13]
 gi|229431097|gb|EEO41309.1| transcription accessory protein [Fusobacterium sp. 4_1_13]
          Length = 720

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + +K+ D D DRG+
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKIKIKDVDKDRGR 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VGLTRK 719


>gi|170766572|ref|ZP_02901025.1| ribonuclease PH [Escherichia albertii TW07627]
 gi|170124010|gb|EDS92941.1| ribonuclease PH [Escherichia albertii TW07627]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG]
 gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF]
 gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
 gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYAMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA              VP+   V+ +++G+V    D 
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIV----DS 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           +   D+  +ED     D  V  T  G
Sbjct: 173 VPYLDLRYEEDVRAETDMNVVRTGDG 198


>gi|325110867|ref|YP_004271935.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
 gi|324971135|gb|ADY61913.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
          Length = 245

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV--VTLGTREDEQYVDSLSGT 369
           +R DGR +E +R I  Q        GS     G T  +    V L     +++ ++ SG 
Sbjct: 1   MRNDGRQAEQLRPIRVQRHFTGSAPGSVYIKAGRTTLLCTASVDLDVPPWKKHEENPSGW 60

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                   YN LP +T    R        R     RL  R++  V+   A  P T+ I  
Sbjct: 61  ----VTAEYNMLPGSTSPRKRRERTKVDGRSSEIQRLIGRSLRAVVDFAALGPRTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------PISKP-------VAGIAMGLVKDGDDFI 474
           ++ E+DG +    + G  +AL+DA +      P   P       VA I++G+V+      
Sbjct: 117 DVLEADGGTRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQ----T 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED    +D  V  T SG
Sbjct: 173 PMLDLDYSEDSTAEVDLNVVMTGSG 197


>gi|256762307|ref|ZP_05502887.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
 gi|256683558|gb|EEU23253.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|229546000|ref|ZP_04434725.1| S1 domain RNA-binding protein [Enterococcus faecalis TX1322]
 gi|255976017|ref|ZP_05426603.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256852959|ref|ZP_05558329.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256958797|ref|ZP_05562968.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|257078828|ref|ZP_05573189.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|294781179|ref|ZP_06746528.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|307271207|ref|ZP_07552490.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|307279129|ref|ZP_07560187.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|307291304|ref|ZP_07571188.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|229308896|gb|EEN74883.1| S1 domain RNA-binding protein [Enterococcus faecalis TX1322]
 gi|255968889|gb|EET99511.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256711418|gb|EEU26456.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256949293|gb|EEU65925.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256986858|gb|EEU74160.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|294451746|gb|EFG20199.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|306497535|gb|EFM67068.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|306504254|gb|EFM73466.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|306512705|gb|EFM81354.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|315030059|gb|EFT41991.1| S1 RNA binding domain protein [Enterococcus faecalis TX4000]
 gi|315036792|gb|EFT48724.1| S1 RNA binding domain protein [Enterococcus faecalis TX0027]
 gi|315147792|gb|EFT91808.1| S1 RNA binding domain protein [Enterococcus faecalis TX4244]
 gi|323480542|gb|ADX79981.1| S1 RNA binding domain protein [Enterococcus faecalis 62]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|15612047|ref|NP_223699.1| 30S ribosomal protein S1 [Helicobacter pylori J99]
 gi|12230557|sp|Q9ZKF6|RS1_HELPJ RecName: Full=30S ribosomal protein S1
 gi|4155561|gb|AAD06555.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
          Length = 552

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV F G  DGLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEIS-KELLEATEPVLGVVRQITPFGIFVKFKGI-DGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIK 268



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440


>gi|332527561|ref|ZP_08403608.1| 30S ribosomal protein S1 [Rubrivivax benzoatilyticus JA2]
 gi|332111964|gb|EGJ11941.1| 30S ribosomal protein S1 [Rubrivivax benzoatilyticus JA2]
          Length = 571

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++
Sbjct: 205 IVHGVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVQVGQELSAKVLKFDAEK 263

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 264 NRVSLGIK 271



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P   +++ G++  + D+GAFV      +GLVH+S++  T +    S VV  G+ V V +L
Sbjct: 286 PNGTRLF-GKITNIADYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKVVSLGEEVEVMVL 344

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D D+ +I L MK    N
Sbjct: 345 EIDEDKRRISLGMKQCKPN 363



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D +R 
Sbjct: 379 KGPVKSITDFGVFVGLSAGIDGLVHLSDLSWHEPGEAAVRNYKKGQEVEAIVLAVDVERE 438

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 439 RISLGIKQLD 448


>gi|329577124|gb|EGG58596.1| Tex-like protein [Enterococcus faecalis TX1467]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|315166715|gb|EFU10732.1| S1 RNA binding domain protein [Enterococcus faecalis TX1341]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|307288251|ref|ZP_07568249.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|306500767|gb|EFM70087.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|315164183|gb|EFU08200.1| S1 RNA binding domain protein [Enterococcus faecalis TX1302]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|251791523|ref|YP_003006244.1| ribonuclease PH [Dickeya zeae Ech1591]
 gi|247540144|gb|ACT08765.1| ribonuclease PH [Dickeya zeae Ech1591]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+VK G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNGLVAGGKLKASPLKGMVAAVSVGIVK-GE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 9/176 (5%)

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
            Y+    +TGE  R     R+    G   R+     +         + I  ++ ++DG +
Sbjct: 41  QYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGT 100

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG--HMDFKVA 494
             A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+  G   +   + 
Sbjct: 101 YAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEEAAGGPQLALALL 156

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM--SKVLSESRLQLGE 548
                I  ++MD ++       ++ A  QA RG +H L ++   + + E+ + LG+
Sbjct: 157 PASGQIALLEMDSRLHEDHLEQVLEAAAQAARG-VHTLLDLVVRQHVQEASVSLGD 211


>gi|327534936|gb|AEA93770.1| YhgF like protein [Enterococcus faecalis OG1RF]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|315174401|gb|EFU18418.1| S1 RNA binding domain protein [Enterococcus faecalis TX1346]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|315150705|gb|EFT94721.1| S1 RNA binding domain protein [Enterococcus faecalis TX0012]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|315033707|gb|EFT45639.1| S1 RNA binding domain protein [Enterococcus faecalis TX0017]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|312899402|ref|ZP_07758733.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
 gi|311293446|gb|EFQ72002.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LST+ V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|262281423|ref|ZP_06059204.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
 gi|262257249|gb|EEY75986.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+ + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRELDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  R++  ++        T+ I 
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAAR-GKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+++AL+DA             P+   VA I++G+ +D     +
Sbjct: 116 CDVIQADGGTRTAAITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDE----V 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+  +ED     D  V  T +G
Sbjct: 172 LLDLCYEEDSNCQTDLNVVMTQAG 195


>gi|256846632|ref|ZP_05552088.1| transcriptional accessory protein [Fusobacterium sp. 3_1_36A2]
 gi|256717852|gb|EEU31409.1| transcriptional accessory protein [Fusobacterium sp. 3_1_36A2]
          Length = 721

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + +K+ D D DRG+
Sbjct: 655 EGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKIKIKDVDKDRGR 714

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 715 VGLTRK 720


>gi|213579701|ref|ZP_03361527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIV-NGE---AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|153876824|ref|ZP_02003946.1| ribonuclease PH [Beggiatoa sp. PS]
 gi|152066712|gb|EDN66054.1| ribonuclease PH [Beggiatoa sp. PS]
          Length = 240

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I+          GS L   G T+ I  V++  R      D  SG   
Sbjct: 1   MRPSGRAPNELRQINFTRHYTCHAEGSVLAEFGRTKVICNVSIDERVPRFIKDKKSGW-- 58

Query: 372 NDFMMHYNFLPCAT-GEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +SR  +  R   R +   RL  R++  V+   A    T+ I  
Sbjct: 59  --LTAEYGMLPRSTHSRMSREASRGRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL+DA             PI   +A +++G+ K     I +
Sbjct: 117 DVIQADGGTRTAAITGSYIALVDAMQHLLKKRLIRKNPIHGAIAAVSVGIYKG----IPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  +   D+     +Q   +     ++ +   L  AK G   +L + 
Sbjct: 173 LDLDYNEDSDAETDMNIIMNDAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQ 232

Query: 536 SKVLSE 541
           + VL++
Sbjct: 233 NAVLND 238


>gi|38422325|emb|CAE45327.1| unnamed protein product [Magnetospirillum gryphiswaldense]
          Length = 567

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I  S  A +E  R   RS  I ++ E  +I +G V  + D+GAFV   G  DGL+H++ +
Sbjct: 174 IVVSRRAVLEETRAEQRSELIENLKE-GQILEGVVKNITDYGAFVDLGGV-DGLLHVTDI 231

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + +R+   S+ +  G TV V+++ F+ +  +I L +K +D +
Sbjct: 232 AWKRINHPSEALHIGQTVKVQVIRFNPETQRISLGIKQLDAD 273



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDF 677
           V  + +G+V  + +FG F+   G  DG+VH+S LS ++    +    K+GD V  K+LD 
Sbjct: 371 VGTLVEGEVKNITEFGLFIGLSGDIDGMVHMSDLSWDKSGDAAIAEYKKGDVVNAKVLDV 430

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 431 DVEKERISLGIK 442



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 288 FVGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLDVDPQK 347

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 348 RRISLGLK 355


>gi|325103294|ref|YP_004272948.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145]
 gi|324972142|gb|ADY51126.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145]
          Length = 1008

 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           IE+  EM R  I+   E  +I +G +  +  FGAF+   G  DGL++I+ +S  R+   S
Sbjct: 647 IESVIEMQREEISKKLEKGQILEGTIKNITYFGAFID-LGGIDGLLYITDISWGRINHPS 705

Query: 662 DVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           D+++    + V +LD+ D++ +I L +K +  N
Sbjct: 706 DLLELNQKIHVVVLDYEDNKKRISLGLKQLHPN 738


>gi|205354664|ref|YP_002228465.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|226736934|sp|B5RG80|RNPH_SALG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|205274445|emb|CAR39477.1| RNase PH [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326629803|gb|EGE36146.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIV-NGE---AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1 [Janthinobacterium sp. Marseille]
 gi|151280774|gb|ABR89184.1| small subunit ribosomal protein S1 [Janthinobacterium sp.
           Marseille]
          Length = 571

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L +D ++
Sbjct: 206 IVTGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLTVGQEITAKVLKYDQEK 264

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 265 NRVSLGVK 272



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+G+FV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 287 PQGTRLF-GKVTNLTDYGSFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVL 345

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 346 EIDEERRRISLGMKQCKAN 364



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS TE   +     K+GD +   +L  D +R 
Sbjct: 380 RGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRRFKKGDELEAIVLAIDVERE 439

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 440 RVSLGVK 446


>gi|254456362|ref|ZP_05069791.1| 30S ribosomal protein S1 [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083364|gb|EDZ60790.1| 30S ribosomal protein S1 [Candidatus Pelagibacter sp. HTCC7211]
          Length = 575

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           E+NKIYK +V K+MDFGAF         L+H S+LS T++      + K GD +   + +
Sbjct: 289 ELNKIYKVKVSKLMDFGAFCELEPGLTTLLHSSELSWTKKNISAKKMFKVGDEIDCVITE 348

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D D+ ++ +S ++  +N
Sbjct: 349 IDKDKRRVAISHRLTQEN 366


>gi|110643884|ref|YP_671614.1| ribonuclease PH [Escherichia coli 536]
 gi|191170501|ref|ZP_03032054.1| ribonuclease PH [Escherichia coli F11]
 gi|300983477|ref|ZP_07176624.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|306816009|ref|ZP_07450147.1| ribonuclease PH [Escherichia coli NC101]
 gi|123048705|sp|Q0TBG6|RNPH_ECOL5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110345476|gb|ABG71713.1| ribonuclease PH [Escherichia coli 536]
 gi|190909309|gb|EDV68895.1| ribonuclease PH [Escherichia coli F11]
 gi|300306941|gb|EFJ61461.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|305850405|gb|EFM50862.1| ribonuclease PH [Escherichia coli NC101]
 gi|324012723|gb|EGB81942.1| ribonuclease PH [Escherichia coli MS 60-1]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|148926578|ref|ZP_01810260.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845272|gb|EDK22366.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 517

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 129 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 187

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 188 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 232


>gi|16762575|ref|NP_458192.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16767019|ref|NP_462634.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29144064|ref|NP_807406.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56415624|ref|YP_152699.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161505731|ref|YP_001572843.1| ribonuclease PH [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|167549018|ref|ZP_02342777.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995207|ref|ZP_02576297.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233258|ref|ZP_02658316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235339|ref|ZP_02660397.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168241913|ref|ZP_02666845.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168260512|ref|ZP_02682485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464958|ref|ZP_02698850.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818436|ref|ZP_02830436.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442896|ref|YP_002042983.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448918|ref|YP_002047765.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469845|ref|ZP_03075829.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194735193|ref|YP_002116668.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249680|ref|YP_002148665.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264642|ref|ZP_03164716.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364551|ref|YP_002144188.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242269|ref|YP_002217694.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200388670|ref|ZP_03215282.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204928479|ref|ZP_03219678.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|207858971|ref|YP_002245622.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213052654|ref|ZP_03345532.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213425224|ref|ZP_03357974.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213615659|ref|ZP_03371485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213647931|ref|ZP_03377984.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213852853|ref|ZP_03382385.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238910231|ref|ZP_04654068.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289809748|ref|ZP_06540377.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824115|ref|ZP_06543712.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|61234148|sp|P0A2C3|RNPH_SALTY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61234155|sp|P0A2C4|RNPH_SALTI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81599223|sp|Q5PC25|RNPH_SALPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043772|sp|A9MKN2|RNPH_SALAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736931|sp|B5EXE7|RNPH_SALA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736932|sp|B5FM66|RNPH_SALDC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736933|sp|B5R5G7|RNPH_SALEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736935|sp|B4T9Y6|RNPH_SALHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736936|sp|B4SXE4|RNPH_SALNS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736937|sp|B5BI17|RNPH_SALPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736938|sp|B4TZY4|RNPH_SALSV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|25289292|pir||AG0970 RNase PH [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16422302|gb|AAL22593.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16504880|emb|CAD03259.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139700|gb|AAO71266.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56129881|gb|AAV79387.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|160867078|gb|ABX23701.1| hypothetical protein SARI_03907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194401559|gb|ACF61781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407222|gb|ACF67441.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456209|gb|EDX45048.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710695|gb|ACF89916.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632399|gb|EDX50883.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197096028|emb|CAR61615.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197213383|gb|ACH50780.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242897|gb|EDY25517.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291458|gb|EDY30810.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936785|gb|ACH74118.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605768|gb|EDZ04313.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321912|gb|EDZ07110.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205325541|gb|EDZ13380.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327076|gb|EDZ13840.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332556|gb|EDZ19320.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338962|gb|EDZ25726.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344359|gb|EDZ31123.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205350221|gb|EDZ36852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710774|emb|CAR35135.1| RNase PH [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|261248882|emb|CBG26736.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267995995|gb|ACY90880.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160271|emb|CBW19794.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312914760|dbj|BAJ38734.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088154|emb|CBY97916.1| RNase PH [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226787|gb|EFX51837.1| Ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322612900|gb|EFY09852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618965|gb|EFY15852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625258|gb|EFY22085.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630074|gb|EFY26847.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634266|gb|EFY31001.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635833|gb|EFY32542.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643029|gb|EFY39606.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645043|gb|EFY41574.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649857|gb|EFY46280.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653064|gb|EFY49399.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661117|gb|EFY57345.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662394|gb|EFY58607.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667272|gb|EFY63438.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674351|gb|EFY70444.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678441|gb|EFY74502.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680947|gb|EFY76981.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687117|gb|EFY83090.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132094|gb|ADX19524.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195841|gb|EFZ81013.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198242|gb|EFZ83348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200860|gb|EFZ85930.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206614|gb|EFZ91572.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210473|gb|EFZ95359.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216239|gb|EGA00967.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220461|gb|EGA04915.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225325|gb|EGA09559.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228439|gb|EGA12570.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234260|gb|EGA18348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237245|gb|EGA21312.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244764|gb|EGA28768.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323245861|gb|EGA29851.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250956|gb|EGA34832.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257296|gb|EGA40995.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262220|gb|EGA45781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264569|gb|EGA48073.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268858|gb|EGA52316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625479|gb|EGE31824.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|332990583|gb|AEF09566.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIV-NGE---AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|319778262|ref|YP_004129175.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
 gi|317108286|gb|ADU91032.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 23/203 (11%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K R DGR +  +R++S          GS L   G T  +   ++  +        L G  
Sbjct: 6   KNRSDGRSNNQIRNVSITRNYTPYAEGSVLIKVGQTHVLCNASVLPK----VPPFLKGQG 61

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT +     A   ++ G      RL  R++   +   A    ++ I 
Sbjct: 62  TGWVTAEYGMLPRATHDRMDREASKGKQTGRTQEIQRLIGRSLRACIDLAALGEISIHID 121

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL DA             PI + +  I++G+V DG    +
Sbjct: 122 CDVIQADGGTRCASITGAWVALYDAINKCIERGLIQSNPIHQQIVAISVGVVGDG----L 177

Query: 476 LSDISGDEDHLGHMDFKVAGTDS 498
           L D+   ED     D  V  T +
Sbjct: 178 LLDLDYSEDSNCESDINVVMTSN 200


>gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter sp. FRC-32]
 gi|254808588|sp|B9M3E3|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter sp. FRC-32]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 23/202 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR   ++R++      ++   GS L   GDT+ I   ++    +      L G   
Sbjct: 1   MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASV----ESSVPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S   A   +  G      RL  R++  V+  +     ++ I  
Sbjct: 57  GWVTAEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA            +PI + VA +++G+V      + +
Sbjct: 117 DVIQADGGTRTASITGAYVALCDALQGLVAKGELSSLPIREAVAAVSVGIVGG----VAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS 498
            D++  ED    +D     T S
Sbjct: 173 LDLNYVEDSAAEVDMNFVMTSS 194


>gi|294339657|emb|CAZ88017.1| Protein tex [Thiomonas sp. 3As]
          Length = 800

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLD 676
           E     +G V  V  FGAFV     +DGLVH+SQ++   V    +VVK GD      +  
Sbjct: 675 EAGMQLEGTVTNVTAFGAFVDLGVHQDGLVHVSQMAQRFVNDAREVVKTGDIVKVRVVEV 734

Query: 677 FDDRGKIKLSMKVVD 691
              R +I LSM+  D
Sbjct: 735 DVARKRIALSMRPAD 749


>gi|290559778|gb|EFD93102.1| RNA polymerase Rpb7 domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 179

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------AK 659
           + R+I   P +++  +GQV  + + GA V+  G  DGLVHISQ   + V          +
Sbjct: 71  VFRAIAYTPVLHETVRGQVTDISEIGAVVNI-GPIDGLVHISQTMDDFVDFSKNTLTGRR 129

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           T   +K GDTV   ++    +G +K+ + +     GKP
Sbjct: 130 TKASIKAGDTVLASIIAVSTKGIMKVGLTMRSIGLGKP 167


>gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78]
 gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYAMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA              VP+   V+ +++G+V    D 
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIV----DS 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           +   D+  +ED     D  V  T  G
Sbjct: 173 VPYLDLRYEEDVRAETDMNVVRTGDG 198


>gi|126659306|ref|ZP_01730442.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
 gi|126619388|gb|EAZ90121.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 224 EVGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFGVNDELKVMIIDL 282

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 283 DAERGRISLSTKQLEPEAG 301


>gi|315230140|ref|YP_004070576.1| eukaryotic translation initiation factor 2 subunit alpha
           [Thermococcus barophilus MP]
 gi|315183168|gb|ADT83353.1| eukaryotic translation initiation factor 2 alpha subunit
           [Thermococcus barophilus MP]
          Length = 275

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V  +  +GAF+       ++G +HIS++++  V    D +KE
Sbjct: 1   MPRRAREFPEEGEFVIATVKSIHPYGAFLTLDEYPGKEGFMHISEVASTWVKNIRDYLKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  V  K++  D R G I LS+K V Q   K
Sbjct: 61  GQKVVAKVIRVDPRKGHIDLSLKRVTQQQRK 91


>gi|91773369|ref|YP_566061.1| translation initiation factor IF-2 subunit alpha [Methanococcoides
           burtonii DSM 6242]
 gi|91712384|gb|ABE52311.1| translation initiation factor a/eIF-2 alpha subunit
           [Methanococcoides burtonii DSM 6242]
          Length = 265

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            + PE        V  V+DFGA+      G ++G +HIS++    V    D V+EG  + 
Sbjct: 4   NNWPESGDFVVCTVKNVVDFGAYTTLEEYGGKEGFIHISEVKAGWVKYVRDYVREGQKIV 63

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
            K+L+ D +R  I LS+K V+++
Sbjct: 64  CKVLNVDPNRRHIDLSLKDVNEH 86


>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
           7]
 gi|29336897|sp|Q975G9|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
 gi|15621437|dbj|BAB65432.1| 275aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 275

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L++ +R+DGR +   R IS  +   ++  GS+L   GDT  +  V L   E+E + D+  
Sbjct: 23  LERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKL--EEEEPFPDT-- 78

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
              + + +++   LP A  E    G P    I   R+  R++ 
Sbjct: 79  -PNQGNLVVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLR 119



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 40/189 (21%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+ + T   A++++G+ L   G+T+VLA V  +      ++ FP T N       V  +
Sbjct: 38  RPISV-TLNYAKKAEGSALVKLGDTMVLAGVKLEE-----EEPFPDTPNQGNLVVNVELL 91

Query: 74  PGGYLRRES-RPTENEILISRMIDRSIRPLFSKCYKNETQVII----------NVMQHDL 122
           P  Y   E   P EN I ++R++DRS+R   SK       VII          +V   D 
Sbjct: 92  PLAYETFEPGPPDENAIELARVVDRSLRD--SKAVDLSKLVIIPGKKVWTAWVDVYVLDY 149

Query: 123 ESSPHVVSMVAASAALMLSGLP---FEG------------------PVVGAQVDYINGQY 161
             +      +AA AAL  + LP    EG                  PVV   V  I    
Sbjct: 150 GGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTVTVAKIGKYL 209

Query: 162 VLNPRLDED 170
           V++P LDE+
Sbjct: 210 VVDPSLDEE 218


>gi|256752965|ref|ZP_05493790.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748148|gb|EEU61227.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 364

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+V  ++D GAFV   G  DG + +S++S ER+    +V+  GD V + +L  D++ 
Sbjct: 193 IVEGRVKNIIDKGAFVD-IGGFDGFIPLSEISWERIKNPREVLGMGDKVSIYILKVDEKN 251

Query: 682 -KIKLSMKVV 690
            KI LS++ V
Sbjct: 252 EKITLSLRKV 261


>gi|296135528|ref|YP_003642770.1| Tex-like protein protein-like protein [Thiomonas intermedia K12]
 gi|295795650|gb|ADG30440.1| Tex-like protein protein-like protein [Thiomonas intermedia K12]
          Length = 800

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLD 676
           E     +G V  V  FGAFV     +DGLVH+SQ++   V    +VVK GD      +  
Sbjct: 675 EAGMQLEGTVTNVTAFGAFVDLGVHQDGLVHVSQMAQRFVNDAREVVKTGDIVKVRVVEV 734

Query: 677 FDDRGKIKLSMKVVD 691
              R +I LSM+  D
Sbjct: 735 DVARKRIALSMRPAD 749


>gi|239931006|ref|ZP_04687959.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291439379|ref|ZP_06578769.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291342274|gb|EFE69230.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
          Length = 245

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R I+ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVLCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y  LP AT           R+G  +  EI   RL  R++  V+   A    T+ +
Sbjct: 59  WVTAEYAMLPRATHTRGDRESVKGRIGGRT-HEI--SRLVGRSLRAVIDYKALGENTVVL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + GS +AL DA               P++  V+ +++G+V     
Sbjct: 116 DCDVLQADGGTRTAAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIVGG--- 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            + L D+  +ED     D  V  T  G
Sbjct: 173 -VPLLDLCYEEDVKADTDMNVVCTGDG 198


>gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
 gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
          Length = 235

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 28/203 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +S   G      GS+L   G T+ +V V+L T    ++V    G    
Sbjct: 3   RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSL-TDGVPRHVRPREGW--- 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR------RAIHPVLPQTAQFPYTLRIV 426
             M  YN LP +T E         R+   GR A       RA   VL  ++    T+ I 
Sbjct: 59  -LMTEYNLLPRSTKERKE----RERQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVID 113

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GVPISKPV---AGIAMGLVKDGDDFIIL 476
           +++ ++DG + +A++ G   AL  A       G     P+   A I++G    G++ I+L
Sbjct: 114 ADVLQADGGTRVASLIGGYAALHQALDKMVRSGALDEWPLQEFAAISLGWF--GEERILL 171

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D++  ED     D  V  T  G
Sbjct: 172 -DLTHVEDENAWADLTVVATQGG 193


>gi|315932624|gb|EFV11555.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 532

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 144 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 202

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 203 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 247


>gi|255037232|ref|YP_003087853.1| 30S ribosomal protein S1 [Dyadobacter fermentans DSM 18053]
 gi|254949988|gb|ACT94688.1| RNA binding S1 domain protein [Dyadobacter fermentans DSM 18053]
          Length = 598

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 18/113 (15%)

Query: 584 KVNIDDDGTVKIASSSLAE--IEAAREMIRSITDVPEVNKIYKGQVVK-----VMDFGAF 636
           K+N  +D  V ++   L E  +EA R+ I        +N + KGQV++     + +FG F
Sbjct: 183 KINYANDNVV-VSHKILIEKDLEAQRQQI--------LNNLEKGQVLEGVIKNMTNFGVF 233

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           +   G  DGL+HI+ +S  R+   SD++     + V +LDFD+  K I L +K
Sbjct: 234 IDLGGV-DGLLHITDISWGRINHPSDLLSLDQKLNVVVLDFDEEKKRISLGLK 285



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +KG V  + +FG F+      DGLVH+S LS T+++   SD VK  D + V +L+ D D 
Sbjct: 394 HKGVVRNLTNFGLFIELEEGIDGLVHVSDLSWTKKIKHPSDFVKVNDELEVVVLELDADN 453

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 454 RRLALGHKQLEEN 466


>gi|227488608|ref|ZP_03918924.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227543211|ref|ZP_03973260.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227091502|gb|EEI26814.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227181020|gb|EEI61992.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 806

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ++D+     I +G V  V  FGAFV     +DGLVH+S +S   V+   DVVK 
Sbjct: 650 KEGVEKVSDLTP-GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVSDPHDVVKN 708

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GD      L     R +I L++++ D+
Sbjct: 709 GDIVKVKVLDVDVLRNRISLTLRLDDE 735


>gi|217976651|ref|YP_002360798.1| RNA binding S1 domain protein [Methylocella silvestris BL2]
 gi|217502027|gb|ACK49436.1| RNA binding S1 domain protein [Methylocella silvestris BL2]
          Length = 769

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V +FGAFV     +DGLVH+SQL+   V   ++VVK G  V V++L+ D  R
Sbjct: 653 VLEGTVTNVANFGAFVDIGVHQDGLVHVSQLADRFVKDPAEVVKAGAVVKVRVLEVDLKR 712

Query: 681 GKIKLSMKVVDQNTG 695
            +I LSM+  D   G
Sbjct: 713 KRIALSMRKEDLAKG 727


>gi|116333784|ref|YP_795311.1| RNA-binding protein [Lactobacillus brevis ATCC 367]
 gi|116099131|gb|ABJ64280.1| RNA binding protein (S1 domain) [Lactobacillus brevis ATCC 367]
          Length = 129

 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +   G +  +  +GAFV   G R GL+HIS+     V    D +     V V +LD 
Sbjct: 4   QIGQRVTGHITGIQPYGAFVSLGGHRQGLIHISECHCGYVKDIHDYLAVNQEVDVVILDI 63

Query: 678 DD-RGKIKLSMKVVDQ 692
           D+  GKI LS++ ++ 
Sbjct: 64  DEFTGKISLSLRCLEH 79


>gi|257463950|ref|ZP_05628335.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium sp. D12]
 gi|317061474|ref|ZP_07925959.1| LytB protein [Fusobacterium sp. D12]
 gi|313687150|gb|EFS23985.1| LytB protein [Fusobacterium sp. D12]
          Length = 545

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
           +G+V +V+ +GAFV      +GLVHIS  +  ++     +  K G+TV VK+L+F+    
Sbjct: 286 EGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEAR 345

Query: 682 KIKLSMKVVDQN 693
           K+KL  K + +N
Sbjct: 346 KLKLGFKQLVEN 357



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           +MDFG  V     R G +HIS++S +R+    D+   G TV  K+L  D+  K IKLS+K
Sbjct: 207 IMDFGLSVMINHLR-GFIHISEVSWKRLDDLKDLYSVGQTVEAKILSLDEEKKNIKLSIK 265

Query: 689 VVDQN 693
            + +N
Sbjct: 266 QLTEN 270


>gi|205356378|ref|ZP_03223143.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345763|gb|EDZ32401.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|315645714|ref|ZP_07898838.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
 gi|315279192|gb|EFU42502.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR S+ +R ++    + +   GS     GDT+ ++  T+    DE+    L G  +
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATV----DEKVPPFLKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E +R G  + R +   RL  RA+  V+   A    T+ + 
Sbjct: 57  GWVTAEYSMLPRATQSRNQREANR-GKLTGRTMEIQRLIGRALRSVVNLYALGERTITLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +   ++ G+ +AL             A  PI+  +A I++G+   G   ++
Sbjct: 116 CDVIQADGGTRTTSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIA--GGQALL 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D++ +ED    +D  +  T  G
Sbjct: 174 --DLNYEEDSKAKVDMNLVMTGGG 195


>gi|293374133|ref|ZP_06620467.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325837445|ref|ZP_08166427.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
 gi|292647236|gb|EFF65212.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325490977|gb|EGC93275.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
          Length = 236

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R +      +    G+ L   G+T+ I   T+    + +    + G  +
Sbjct: 1   MRTNERKNNELRPVEFIPNYIMHPEGAVLISVGNTKVICTATI----ENKLPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R +   RL  R++   +        T+ I  
Sbjct: 57  GWITAEYSMLPRATNTRNVRESARGKLSGRTMEIQRLIGRSLRAAVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +A       L+  GV    P+ + +A I++G +KDG+   ++
Sbjct: 117 DVIQADGGTRTASITGSVVAMKLAFDKLVAEGVLKESPLKEHLAAISVG-IKDGE---VI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  T+SG
Sbjct: 173 LDLDYEEDSSAEVDMNVIMTESG 195


>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
 gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 24/185 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLSGT 369
           R DGR+   +R  S     L R HGS+ + +GDT  +  V     GTR+         G 
Sbjct: 6   RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRK---------GE 56

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 +   + P  TG++       R+E  +    +R +  +   T     T  +V ++
Sbjct: 57  NPEKASIEVVWKP-KTGQI------GRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQV 109

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH---L 486
              DGS     +  S  AL  AG+P+      I  G++ +G   +IL   + +E      
Sbjct: 110 VGDDGSLLPCAINASCAALAFAGIPMKHLAVAICCGVMDNG--AVILDTSTAEEQQAKSF 167

Query: 487 GHMDF 491
            H+ F
Sbjct: 168 AHLVF 172


>gi|254566235|ref|XP_002490228.1| DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase [Pichia
           pastoris GS115]
 gi|238030024|emb|CAY67947.1| DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase [Pichia
           pastoris GS115]
 gi|328350623|emb|CCA37023.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Pichia
           pastoris CBS 7435]
          Length = 1005

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           Y GQ+  +  +GAF+     R   GL HIS++S+  +    DV   GD V   +L     
Sbjct: 118 YSGQITNITPYGAFIRLQALRRPTGLCHISEMSSSEIRHPLDVANVGDKVTATVLSVSS- 176

Query: 681 GKIKLSMKVVDQ 692
            KI LS+K  D+
Sbjct: 177 NKISLSLKNPDE 188


>gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
 gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
          Length = 246

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 28/207 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +      +    GS L   G+T+ + V +L     E       G+   
Sbjct: 5   RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLCVASL----TEGVPRWRQGSGEG 60

Query: 373 DFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT + S+     G    R     RL  R++  V+   +    T+ +  +
Sbjct: 61  WVTAEYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA--------GVPISKP--------VAGIAMGLVKDGDD 472
           + ++DG +  A++ G+ +AL DA         +P+ K         VA I++G++ DG+ 
Sbjct: 121 VLQADGGTRTASITGAYVALADAIKWGQKNGLIPLDKAHQKVLKDSVAAISVGII-DGEP 179

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            +   D+  +ED     D  V  T SG
Sbjct: 180 RL---DLPYEEDVRAETDMNVVVTGSG 203


>gi|86152098|ref|ZP_01070310.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124389|ref|YP_004066393.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840883|gb|EAQ58133.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018111|gb|ADT66204.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|300914328|ref|ZP_07131644.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307724436|ref|YP_003904187.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X513]
 gi|300889263|gb|EFK84409.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307581497|gb|ADN54896.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X513]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+V  ++D GAFV   G  DG + +S++S ER+    +V+  GD V + +L  D++ 
Sbjct: 193 IVEGRVKNIIDKGAFVD-IGGFDGFIPLSEISWERIKNPREVLGMGDKVSIYILKVDEKN 251

Query: 682 -KIKLSMKVV 690
            KI LS++ V
Sbjct: 252 EKITLSLRKV 261


>gi|298373340|ref|ZP_06983329.1| ribosomal protein S1 [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274392|gb|EFI15944.1| ribosomal protein S1 [Bacteroidetes oral taxon 274 str. F0058]
          Length = 606

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++++ KGQV++     V  +G F+   G  DGL+HI+ LS  RV    ++VK  + + V 
Sbjct: 218 ISRLEKGQVLEGIVKNVTSYGVFIDLGGV-DGLIHITDLSWGRVNHPDEIVKLDEKINVV 276

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFD+  K I L +K
Sbjct: 277 ILDFDEEKKRIALGLK 292



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S ++ +   +D +K GD V   +L  D +  
Sbjct: 313 KGKVVVMADYGAFLEIIPGVEGLIHVSEMSWSQHLRSANDFLKVGDEVEAVILTLDREER 372

Query: 682 KIKLSMK 688
           K+ L MK
Sbjct: 373 KMSLGMK 379


>gi|326335610|ref|ZP_08201797.1| YhgF like protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692376|gb|EGD34328.1| YhgF like protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 707

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++  DV +V  +  G V  +  FG FV       GLVHISQL    V+  ++VVK  + 
Sbjct: 628 VKNFDDV-QVGMVLNGIVNNITAFGCFVDIGIKESGLVHISQLKDGYVSNVNEVVKLHEQ 686

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+++ D  R +I LSM
Sbjct: 687 VRVKVVEVDTVRRRISLSM 705


>gi|147802809|emb|CAN68483.1| hypothetical protein VITISV_006784 [Vitis vinifera]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF---------------CGARDGLVHISQLSTERVAKTSDV 663
           +  I++  V  V D+GAFVH                     GLVH+S++S + V    DV
Sbjct: 193 IGDIFEAMVGSVEDYGAFVHLRFPDGTSFSVTYITGLYHLTGLVHVSEVSWDLVQDVRDV 252

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
           + EGD V VK++  D  + +I LS+K ++++
Sbjct: 253 LNEGDEVRVKIVKVDRVKSRITLSIKQLEED 283


>gi|284926127|gb|ADC28479.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|86150205|ref|ZP_01068432.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597510|ref|ZP_01100744.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562513|ref|YP_002344292.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839321|gb|EAQ56583.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190102|gb|EAQ94077.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360219|emb|CAL35014.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315927556|gb|EFV06889.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929971|gb|EFV09122.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|300871842|ref|YP_003786715.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
 gi|300689543|gb|ADK32214.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  I KG+V  V  FGAFV+     +GL+H+S LS    V   +D VK G  +  K+LD 
Sbjct: 279 VGDIIKGEVTTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDM 338

Query: 678 D-DRGKIKLSMKVVDQN 693
           +    K+ L +K V  N
Sbjct: 339 NVPERKLTLGLKQVKDN 355


>gi|189461460|ref|ZP_03010245.1| hypothetical protein BACCOP_02116 [Bacteroides coprocola DSM 17136]
 gi|189431989|gb|EDV00974.1| hypothetical protein BACCOP_02116 [Bacteroides coprocola DSM 17136]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E  ++  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 187 NVVVSHKALIEAELEQQK-KEIIGKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 244

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           LS  RV+   +VV     + V +LDFDD  K I L +K
Sbjct: 245 LSWGRVSDPREVVSLDQKLNVVILDFDDEKKRIALGLK 282



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S ++ +    D +K GD +   +L   DR +
Sbjct: 303 KGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEIEAVILTL-DREE 361

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 362 RKMSLGI 368


>gi|167040244|ref|YP_001663229.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|166854484|gb|ABY92893.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+V  ++D GAFV   G  DG + +S++S ER+    +V+  GD V + +L  D++ 
Sbjct: 191 IVEGRVKNIIDKGAFVD-IGGFDGFIPLSEISWERIKNPREVLGMGDKVSIYILKVDEKN 249

Query: 682 -KIKLSMKVV 690
            KI LS++ V
Sbjct: 250 EKITLSLRKV 259


>gi|254460324|ref|ZP_05073740.1| ribonuclease PH [Rhodobacterales bacterium HTCC2083]
 gi|206676913|gb|EDZ41400.1| ribonuclease PH [Rhodobacteraceae bacterium HTCC2083]
          Length = 237

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 31/176 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +RD+S +  + +   GS +   GDT  +   TL  R        + G+  
Sbjct: 1   MRPSGRDLNQMRDVSIETNVTKHAEGSCMIKMGDTHVLCTATLENR----VPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPY 421
                 Y  LP +T   SRM    RRE   G          RL  R++   + + A    
Sbjct: 57  GWVTAEYGMLPRST--TSRM----RREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGER 110

Query: 422 TLRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
            + +  ++ ++DG +  A++ G  +A       L+ AG     P+  PVA I+ G+
Sbjct: 111 QITVDCDVIQADGGTRCASITGGWVALKLAVNKLIKAGEITSDPLISPVAAISCGI 166


>gi|57237722|ref|YP_178970.1| 30S ribosomal protein S1 [Campylobacter jejuni RM1221]
 gi|57166526|gb|AAW35305.1| ribosomal protein S1 [Campylobacter jejuni RM1221]
 gi|315058333|gb|ADT72662.1| SSU ribosomal protein S1p [Campylobacter jejuni subsp. jejuni S3]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|304314475|ref|YP_003849622.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587934|gb|ADL58309.1| predicted DNA-directed RNA polymerase subunit E'
           [Methanothermobacter marburgensis str. Marburg]
          Length = 184

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 17/88 (19%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           PE+++I +G+V+++ +FGAFV   G  DGLVH+SQ++ + +            +T   + 
Sbjct: 79  PELHEIVEGEVIEIAEFGAFVR-IGPVDGLVHVSQVTDDYITYDAKKGSLTGKETGKRLD 137

Query: 666 EGDTVWVKLLDFDDRG-----KIKLSMK 688
           EGD V  +++    +G     K+ L+M+
Sbjct: 138 EGDLVRARIVALSLKGRREGVKVGLTMR 165


>gi|152990412|ref|YP_001356134.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
 gi|151422273|dbj|BAF69777.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
          Length = 558

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K++ ++D  V    + L +I   RE I  +  +     I +G + K+ ++G FV      
Sbjct: 169 KIDPENDSIVISRKAYLQDIFKKREEI--VNQLLNEGTIVEGTIKKITNYGMFVEVAPQV 226

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +GLVH +++S +     +   +EGD V VK +DF+ ++ ++ LS+K
Sbjct: 227 EGLVHYNEISYKGPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLSIK 272



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  + DFGAFV   G+ +GL+H   +S E+  K  D    G+ V VK+   D D 
Sbjct: 378 VVEGEVTSLTDFGAFVR-IGSVEGLLHNQDISWEKGQKAKDAFNVGEKVEVKIAKIDRDN 436

Query: 681 GKIKLSMK 688
            KI L  K
Sbjct: 437 EKISLDRK 444


>gi|83591633|ref|YP_425385.1| 30S ribosomal protein S1 [Rhodospirillum rubrum ATCC 11170]
 gi|83574547|gb|ABC21098.1| SSU ribosomal protein S1P [Rhodospirillum rubrum ATCC 11170]
          Length = 573

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E  R   RS + +     +I +G V  + D+GAFV   G  DGL+H++ +S
Sbjct: 176 IVVSRRAVLEETRAEERSKLMETLREGEILEGVVKNITDYGAFVDLGGV-DGLLHVTDIS 234

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +R+   ++ +  G TV V+++ F+ +  +I L MK
Sbjct: 235 WKRINHPTEALSIGQTVKVQVIRFNAETQRISLGMK 270



 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D D+
Sbjct: 290 FVGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMILDVDPDK 349

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 350 RRISLGLK 357



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G++  + +FG F+   G  DG++H+S L   R    +    K+GD V  K+LD D ++ 
Sbjct: 378 EGEIKNITEFGLFIGLTGDIDGMIHLSDLDWNRSGDEAVKDYKKGDVVQAKVLDVDVEKE 437

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 438 RISLGVK 444


>gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
 gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 30/207 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R +    G  +   GS L   GDT+ +   ++     +       G+  
Sbjct: 2   TRADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASV----TDGVPRWRKGSGL 57

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y  LP AT   S       R+G  +  EI   RL  R++   +   A    T+ 
Sbjct: 58  GWLTAEYAMLPSATNTRSDRESVRGRIGGRT-HEI--SRLIGRSLRACIDLKALGENTIA 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDD 472
           +  ++ ++DG +  A + G+ +AL DA              PIS  VA +++G+V    D
Sbjct: 115 LDCDVIQADGGTRTAAITGAYVALADAVTWLAAHNRLADPKPISCQVAAVSVGVV----D 170

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
             +  D+  +ED    +D  V  TD+G
Sbjct: 171 GRVRLDLPYEEDSRAEVDTNVVATDTG 197


>gi|307244332|ref|ZP_07526446.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492298|gb|EFM64337.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK- 682
           KG+V  +M +GAF+   G  +GL HI+ LS  RV     V+  GD V V +   D   K 
Sbjct: 224 KGKVTNIMPYGAFIDLGGV-EGLAHINNLSWTRVESVESVLNVGDEVEVFVQSVDPETKR 282

Query: 683 IKLSMKVVDQNTGKPI 698
           I L++K  D++  K I
Sbjct: 283 IALALKDPDKDPWKLI 298



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I D   V  + +  V+++++ GAF+      +  + I +LS  RV +  DVV  GDTV  
Sbjct: 298 IADEVSVGSVVEATVLRIIEKGAFLQVKEGVEAYLPIGELSEGRVNRVEDVVNVGDTVKA 357

Query: 673 KLLDFD-DRGKIKLSMK 688
            ++ F+ D  ++ LS++
Sbjct: 358 AIIKFNADNKRMMLSIR 374


>gi|163754589|ref|ZP_02161711.1| putative RNA binding protein with S1 RNA-binding domain [Kordia
           algicida OT-1]
 gi|161325530|gb|EDP96857.1| putative RNA binding protein with S1 RNA-binding domain [Kordia
           algicida OT-1]
          Length = 708

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I+DV +V     G V  + +FG FV       GLVHIS+L+ E ++  + VVK    
Sbjct: 629 VKTISDV-KVGMSLPGIVNNITNFGCFVDIGIKESGLVHISKLANEFISDVNSVVKLHQH 687

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           + V +++ D+ R +I+LSM
Sbjct: 688 ITVTVVEVDEARKRIQLSM 706


>gi|157415150|ref|YP_001482406.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386114|gb|ABV52429.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747793|gb|ADN91063.1| Ribosomal protein S1 [Campylobacter jejuni subsp. jejuni M1]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
 gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
 gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
           protein, putative (AFU_orthologue; AFUA_2G03740)
           [Aspergillus nidulans FGSC A4]
          Length = 265

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 12/163 (7%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLS 367
           K+R+DGR    +R + AQ+     + GSS    G+T  +  V     G R D       +
Sbjct: 13  KLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDA--TGGSA 70

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA---RRAIHPVLPQTAQFPY-TL 423
           G+      +  N    A+ +  R    S R+   GR+A   R A    L  T  +P+ T+
Sbjct: 71  GSSGAVVEVDVNIAGFASVDRKRRAGGSDRQ--SGRIASTLRSAFQSHL-HTYLYPHSTI 127

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
            I   +  SDGS   A V   +LAL+DAG+P+   + G   G+
Sbjct: 128 SIHVSVLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGM 170


>gi|215488923|ref|YP_002331354.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|254808587|sp|B7UM50|RNPH_ECO27 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|215266995|emb|CAS11440.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|323965909|gb|EGB61357.1| ribonuclease PH [Escherichia coli M863]
 gi|323975137|gb|EGB70242.1| ribonuclease PH [Escherichia coli TW10509]
 gi|327250769|gb|EGE62471.1| ribonuclease PH [Escherichia coli STEC_7v]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|283768906|ref|ZP_06341816.1| general stress protein 13 [Bulleidia extructa W1219]
 gi|283104459|gb|EFC05833.1| general stress protein 13 [Bulleidia extructa W1219]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +I +G+V  +  +GAFV       GL+HIS++S   V      V+ G  V VK++D 
Sbjct: 4   KVGQIVEGKVTGLQPYGAFVAIDKNLSGLIHISEISDGFVKNIHSFVEVGQVVRVKIIDL 63

Query: 678 DDR-GKIKLSMKVVDQ 692
           D++  + KLS+K + +
Sbjct: 64  DEKSNQAKLSLKALQK 79


>gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++  G D  IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFETLVKSGKLKHNPMKGHVAAVSVGIL--GQD--IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDG 195


>gi|262193857|ref|YP_003265066.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
 gi|262077204|gb|ACY13173.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
          Length = 609

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P V    +G+V  V  FGAFV       GLVH S+L T +V   ++ V  GD   VK+LD
Sbjct: 403 PAVGDTVQGRVRSVAAFGAFVVLPSGHVGLVHKSELRTGQVNDATEEVNVGDEFEVKVLD 462

Query: 677 F-----DDRGKIKLSMKVV 690
                  +R +I LS +V+
Sbjct: 463 VSPDGDSNRLRIGLSRRVL 481


>gi|15804184|ref|NP_290223.1| ribonuclease PH [Escherichia coli O157:H7 EDL933]
 gi|15833772|ref|NP_312545.1| ribonuclease PH [Escherichia coli O157:H7 str. Sakai]
 gi|74314123|ref|YP_312542.1| ribonuclease PH [Shigella sonnei Ss046]
 gi|82546006|ref|YP_409953.1| ribonuclease PH [Shigella boydii Sb227]
 gi|117625915|ref|YP_859238.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157158506|ref|YP_001465123.1| ribonuclease PH [Escherichia coli E24377A]
 gi|161486067|ref|NP_756329.2| ribonuclease PH [Escherichia coli CFT073]
 gi|162138338|ref|YP_543146.2| ribonuclease PH [Escherichia coli UTI89]
 gi|168748709|ref|ZP_02773731.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|168753467|ref|ZP_02778474.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|168759740|ref|ZP_02784747.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|168766063|ref|ZP_02791070.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|168772391|ref|ZP_02797398.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|168779798|ref|ZP_02804805.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|168785519|ref|ZP_02810526.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|168798588|ref|ZP_02823595.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|170680501|ref|YP_001745943.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187733771|ref|YP_001882340.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|191167816|ref|ZP_03029622.1| ribonuclease PH [Escherichia coli B7A]
 gi|193063848|ref|ZP_03044935.1| ribonuclease PH [Escherichia coli E22]
 gi|193070385|ref|ZP_03051327.1| ribonuclease PH [Escherichia coli E110019]
 gi|194430060|ref|ZP_03062565.1| ribonuclease PH [Escherichia coli B171]
 gi|194431006|ref|ZP_03063299.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|195936204|ref|ZP_03081586.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4024]
 gi|208807479|ref|ZP_03249816.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208812475|ref|ZP_03253804.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208819811|ref|ZP_03260131.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209399306|ref|YP_002273121.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209921114|ref|YP_002295198.1| ribonuclease PH [Escherichia coli SE11]
 gi|217324320|ref|ZP_03440404.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|227883811|ref|ZP_04001616.1| ribonuclease PH [Escherichia coli 83972]
 gi|237703414|ref|ZP_04533895.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|254795598|ref|YP_003080435.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|256021353|ref|ZP_05435218.1| ribonuclease PH [Shigella sp. D9]
 gi|256025627|ref|ZP_05439492.1| ribonuclease PH [Escherichia sp. 4_1_40B]
 gi|260846592|ref|YP_003224370.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|261224174|ref|ZP_05938455.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254784|ref|ZP_05947317.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK966]
 gi|291285014|ref|YP_003501832.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|293407266|ref|ZP_06651190.1| rph [Escherichia coli FVEC1412]
 gi|293413077|ref|ZP_06655745.1| ribonuclease PH [Escherichia coli B354]
 gi|293417104|ref|ZP_06659731.1| ribonuclease PH [Escherichia coli B185]
 gi|293463967|ref|ZP_06664381.1| ribonuclease PH [Escherichia coli B088]
 gi|298383012|ref|ZP_06992607.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|300815118|ref|ZP_07095343.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|300822413|ref|ZP_07102553.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300898578|ref|ZP_07116908.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300919790|ref|ZP_07136265.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300939243|ref|ZP_07153922.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300948023|ref|ZP_07162164.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300954463|ref|ZP_07166913.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300984904|ref|ZP_07177192.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|301018972|ref|ZP_07183195.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|301028402|ref|ZP_07191648.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|301047433|ref|ZP_07194512.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|301644309|ref|ZP_07244311.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|307140341|ref|ZP_07499697.1| ribonuclease PH [Escherichia coli H736]
 gi|307314272|ref|ZP_07593880.1| ribonuclease PH [Escherichia coli W]
 gi|309797616|ref|ZP_07692004.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|331644361|ref|ZP_08345490.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331649458|ref|ZP_08350544.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331655275|ref|ZP_08356274.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331659963|ref|ZP_08360901.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331665268|ref|ZP_08366169.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331670483|ref|ZP_08371322.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331675122|ref|ZP_08375879.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331679734|ref|ZP_08380404.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331685306|ref|ZP_08385892.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332282587|ref|ZP_08395000.1| ribonuclease PH [Shigella sp. D9]
 gi|54039263|sp|P66680|RNPH_ECO57 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54042177|sp|P66679|RNPH_ECOL6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123558299|sp|Q31UY3|RNPH_SHIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123615832|sp|Q3YW05|RNPH_SHISS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228279|sp|A1AHH4|RNPH_ECOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991083|sp|A7ZTJ4|RNPH_ECO24 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736905|sp|B5YWE1|RNPH_ECO5E RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736906|sp|B6I3M0|RNPH_ECOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736907|sp|B1LK80|RNPH_ECOSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736941|sp|B2TTV7|RNPH_SHIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|12518399|gb|AAG58787.1|AE005591_11 RNase PH [Escherichia coli O157:H7 str. EDL933]
 gi|13363993|dbj|BAB37941.1| RNase PH [Escherichia coli O157:H7 str. Sakai]
 gi|73857600|gb|AAZ90307.1| RNase PH [Shigella sonnei Ss046]
 gi|81247417|gb|ABB68125.1| RNase PH [Shigella boydii Sb227]
 gi|115515039|gb|ABJ03114.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157080536|gb|ABV20244.1| ribonuclease PH [Escherichia coli E24377A]
 gi|170518219|gb|ACB16397.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187430763|gb|ACD10037.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|187771578|gb|EDU35422.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|188016889|gb|EDU55011.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|189002636|gb|EDU71622.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|189359228|gb|EDU77647.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|189364689|gb|EDU83108.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|189369513|gb|EDU87929.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|189374286|gb|EDU92702.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|189378769|gb|EDU97185.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|190902159|gb|EDV61902.1| ribonuclease PH [Escherichia coli B7A]
 gi|192930563|gb|EDV83170.1| ribonuclease PH [Escherichia coli E22]
 gi|192956324|gb|EDV86785.1| ribonuclease PH [Escherichia coli E110019]
 gi|194411887|gb|EDX28204.1| ribonuclease PH [Escherichia coli B171]
 gi|194420461|gb|EDX36537.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|208727280|gb|EDZ76881.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208733752|gb|EDZ82439.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208739934|gb|EDZ87616.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209160706|gb|ACI38139.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209754598|gb|ACI75606.1| RNase PH [Escherichia coli]
 gi|209754600|gb|ACI75607.1| RNase PH [Escherichia coli]
 gi|209754602|gb|ACI75608.1| RNase PH [Escherichia coli]
 gi|209754604|gb|ACI75609.1| RNase PH [Escherichia coli]
 gi|209754606|gb|ACI75610.1| RNase PH [Escherichia coli]
 gi|209914373|dbj|BAG79447.1| ribonuclease PH [Escherichia coli SE11]
 gi|217320541|gb|EEC28965.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|222035351|emb|CAP78096.1| ribonuclease PH [Escherichia coli LF82]
 gi|226902678|gb|EEH88937.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|227839089|gb|EEJ49555.1| ribonuclease PH [Escherichia coli 83972]
 gi|254594998|gb|ACT74359.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|257761739|dbj|BAI33236.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|281180689|dbj|BAI57019.1| ribonuclease PH [Escherichia coli SE15]
 gi|284923676|emb|CBG36773.1| ribonuclease PH [Escherichia coli 042]
 gi|290764887|gb|ADD58848.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|291321599|gb|EFE61035.1| ribonuclease PH [Escherichia coli B088]
 gi|291426077|gb|EFE99111.1| rph [Escherichia coli FVEC1412]
 gi|291431135|gb|EFF04128.1| ribonuclease PH [Escherichia coli B185]
 gi|291468724|gb|EFF11217.1| ribonuclease PH [Escherichia coli B354]
 gi|294492761|gb|ADE91517.1| ribonuclease PH [Escherichia coli IHE3034]
 gi|298276848|gb|EFI18366.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|299878513|gb|EFI86724.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|300300641|gb|EFJ57026.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|300318542|gb|EFJ68326.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300357741|gb|EFJ73611.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300399466|gb|EFJ83004.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|300408333|gb|EFJ91871.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|300413143|gb|EFJ96453.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300452418|gb|EFK16038.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300455842|gb|EFK19335.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300525060|gb|EFK46129.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300532010|gb|EFK53072.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|301077347|gb|EFK92153.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|306906095|gb|EFN36614.1| ribonuclease PH [Escherichia coli W]
 gi|307555742|gb|ADN48517.1| ribonuclease PH [Escherichia coli ABU 83972]
 gi|307628716|gb|ADN73020.1| ribonuclease PH [Escherichia coli UM146]
 gi|308118803|gb|EFO56065.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|312948204|gb|ADR29031.1| ribonuclease PH [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062931|gb|ADT77258.1| ribonuclease PH [Escherichia coli W]
 gi|315285457|gb|EFU44902.1| ribonuclease PH [Escherichia coli MS 110-3]
 gi|315296969|gb|EFU56249.1| ribonuclease PH [Escherichia coli MS 16-3]
 gi|315618654|gb|EFU99240.1| ribonuclease PH [Escherichia coli 3431]
 gi|320176298|gb|EFW51358.1| Ribonuclease PH [Shigella dysenteriae CDC 74-1112]
 gi|320179979|gb|EFW54921.1| Ribonuclease PH [Shigella boydii ATCC 9905]
 gi|320186817|gb|EFW61537.1| Ribonuclease PH [Shigella flexneri CDC 796-83]
 gi|320191306|gb|EFW65956.1| Ribonuclease PH [Escherichia coli O157:H7 str. EC1212]
 gi|320193850|gb|EFW68483.1| Ribonuclease PH [Escherichia coli WV_060327]
 gi|320639550|gb|EFX09158.1| ribonuclease PH [Escherichia coli O157:H7 str. G5101]
 gi|320644989|gb|EFX14019.1| ribonuclease PH [Escherichia coli O157:H- str. 493-89]
 gi|320650256|gb|EFX18745.1| ribonuclease PH [Escherichia coli O157:H- str. H 2687]
 gi|320661342|gb|EFX28766.1| ribonuclease PH [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666356|gb|EFX33355.1| ribonuclease PH [Escherichia coli O157:H7 str. LSU-61]
 gi|323160749|gb|EFZ46685.1| ribonuclease PH [Escherichia coli E128010]
 gi|323166871|gb|EFZ52610.1| ribonuclease PH [Shigella sonnei 53G]
 gi|323182671|gb|EFZ68074.1| ribonuclease PH [Escherichia coli 1357]
 gi|323189449|gb|EFZ74730.1| ribonuclease PH [Escherichia coli RN587/1]
 gi|323376476|gb|ADX48744.1| ribonuclease PH [Escherichia coli KO11]
 gi|323934812|gb|EGB31194.1| ribonuclease PH [Escherichia coli E1520]
 gi|323939598|gb|EGB35804.1| ribonuclease PH [Escherichia coli E482]
 gi|323949882|gb|EGB45766.1| ribonuclease PH [Escherichia coli H252]
 gi|323954817|gb|EGB50597.1| ribonuclease PH [Escherichia coli H263]
 gi|324008099|gb|EGB77318.1| ribonuclease PH [Escherichia coli MS 57-2]
 gi|324019680|gb|EGB88899.1| ribonuclease PH [Escherichia coli MS 117-3]
 gi|324111538|gb|EGC05519.1| ribonuclease PH [Escherichia fergusonii B253]
 gi|324116018|gb|EGC09944.1| ribonuclease PH [Escherichia coli E1167]
 gi|326337358|gb|EGD61193.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1044]
 gi|326339883|gb|EGD63690.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1125]
 gi|330909705|gb|EGH38219.1| ribonuclease PH [Escherichia coli AA86]
 gi|331036655|gb|EGI08881.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331041956|gb|EGI14100.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331047290|gb|EGI19368.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331053178|gb|EGI25211.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331057778|gb|EGI29764.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331062545|gb|EGI34465.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331068031|gb|EGI39429.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331072906|gb|EGI44231.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331077677|gb|EGI48889.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332084483|gb|EGI89678.1| ribonuclease PH [Shigella dysenteriae 155-74]
 gi|332084823|gb|EGI90006.1| ribonuclease PH [Shigella boydii 5216-82]
 gi|332089330|gb|EGI94434.1| ribonuclease PH [Shigella boydii 3594-74]
 gi|332104939|gb|EGJ08285.1| ribonuclease PH [Shigella sp. D9]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|326565518|gb|EGE15689.1| ribonuclease PH [Moraxella catarrhalis 12P80B1]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 15/199 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R I       +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRSNNRQNNELRPIYFIRQYTKHAEGSVLVCFGDTKVLCTASI----EAGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++  A   ++ G      RL  R++  +L  +     T+ I  
Sbjct: 57  GWLTAEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISK-------PVAGIAMGLVKDGDDFIILSDIS 480
           ++ ++DG +  A++ G+++AL+DA   + +       P+ G+   +    +   +L D+ 
Sbjct: 117 DVIQADGGTRTASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLD 176

Query: 481 GDEDHLGHMDFKVAGTDSG 499
             ED     D  V  T +G
Sbjct: 177 YAEDSTCDTDLNVVMTQAG 195


>gi|312891743|ref|ZP_07751251.1| SSU ribosomal protein S1P [Mucilaginibacter paludis DSM 18603]
 gi|311295774|gb|EFQ72935.1| SSU ribosomal protein S1P [Mucilaginibacter paludis DSM 18603]
          Length = 677

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V K+ KGQV++     + DFG F+   G  DGL+HI+ +S  R+    +V+     + V 
Sbjct: 264 VAKLEKGQVLEGTVKNITDFGVFIDLGGV-DGLLHITDISWGRIEHPKEVLSLDQKINVV 322

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFDD  K I L +K
Sbjct: 323 VLDFDDEKKRIALGLK 338



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKL--LDFDDR 680
           KG++V V D+GAF+      +GL+H+S++S ++ +    + +K GD V  ++  LD DDR
Sbjct: 359 KGKIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRNPQEFLKVGDEVEAQVLTLDRDDR 418

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 419 -KMSLGIK 425



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           V  + +FG FV      DGL+HIS LS +++V   ++  K G+ + V +L+ D D  K+ 
Sbjct: 449 VKNMTNFGVFVELEDGIDGLIHISDLSWSKKVNHPNEFTKVGEKLDVVVLELDVDNRKLS 508

Query: 685 LSMKVVDQN 693
           L  K +++N
Sbjct: 509 LGHKQLEEN 517


>gi|317129838|ref|YP_004096120.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
 gi|315474786|gb|ADU31389.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
          Length = 255

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 22/197 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +      ++   GS L   G+T+ I   ++    +++    + G  +
Sbjct: 1   MRHDGRKTDDIRKVDIIPHYIKHPEGSVLISFGETKVICAASI----EDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWITAEYSMLPRATEQRNIRESAKGKLSGRTMEIQRLIGRALRSVVDLDAIGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A+V G+ +A+  A             PI   +A I++G V +G+  I +
Sbjct: 117 DVIQADGGTRTASVTGAFVAMALALHKLKEAKQIKKFPIKHFLAAISVG-VNEGN--IAI 173

Query: 477 SDISGDEDHLGHMDFKV 493
            D+   ED   ++D  +
Sbjct: 174 LDLDYIEDSKANVDMNI 190


>gi|158337672|ref|YP_001518848.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
 gi|158307913|gb|ABW29530.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
          Length = 325

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 195 EVGEVVIGTVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDDLKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|53804257|ref|YP_113870.1| 30S ribosomal protein S1 [Methylococcus capsulatus str. Bath]
 gi|53758018|gb|AAU92309.1| ribosomal protein S1 [Methylococcus capsulatus str. Bath]
          Length = 555

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAF+   G  DGL+HI+ ++ +RV   S+ V+ G  + VK+L +D ++
Sbjct: 194 IVTGVVKNLTDYGAFIDLGGI-DGLLHITDMAWKRVRHPSEAVQIGQELQVKVLKYDQEK 252

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 253 NRVSLGLK 260



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++  T +    + VV+ G+ V V +LD D +R +
Sbjct: 282 GKVSNLTDYGCFVELEEGVEGLVHVSEMDWTNKNVNPAKVVQLGEEVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQN 693
           I L MK   QN
Sbjct: 342 ISLGMKQCRQN 352


>gi|19553245|ref|NP_601247.1| RNA binding protein [Corynebacterium glutamicum ATCC 13032]
 gi|62390881|ref|YP_226283.1| transcriptional accessory protein, RNA binding [Corynebacterium
           glutamicum ATCC 13032]
 gi|21324813|dbj|BAB99436.1| Predicted RNA binding protein, contains S1 domain [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326220|emb|CAF20382.1| PUTATIVE TRANSCRIPTIONAL ACCESSORY PROTEIN, RNA BINDING
           [Corynebacterium glutamicum ATCC 13032]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ 
Sbjct: 630 KEGVEKISDLTP-GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFISNPHEVVRS 688

Query: 667 G-DTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G       +    DR +I LS+++ D+  G P
Sbjct: 689 GEVVKVKVMEVDVDRKRIGLSLRLTDE-PGAP 719


>gi|325958359|ref|YP_004289825.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
 gi|325329791|gb|ADZ08853.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
          Length = 195

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 46/77 (59%), Gaps = 12/77 (15%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVK 665
           PE+++I +G+V+++ +FGAF+   G  DGLVH+SQ++ + +            ++   ++
Sbjct: 79  PELHEIVEGEVIEITEFGAFIR-IGPMDGLVHVSQVTDDYINYDGKRGALMGKESKKTLE 137

Query: 666 EGDTVWVKLLDFDDRGK 682
           EG+ V  +++    +GK
Sbjct: 138 EGNNVRARIVALSLKGK 154


>gi|311746070|ref|ZP_07719855.1| ribosomal protein S1 [Algoriphagus sp. PR1]
 gi|126576287|gb|EAZ80565.1| ribosomal protein S1 [Algoriphagus sp. PR1]
          Length = 590

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 10/85 (11%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV++     + +FG F+   G  DGL+HI+ +S  R+    +V++    V + 
Sbjct: 205 LNNLEKGQVLEGVIKNMTNFGVFIDLGGV-DGLLHITDISWGRINHPEEVLQLDQKVQIV 263

Query: 674 LLDF-DDRGKIKLSMKVVDQNTGKP 697
           +LDF DD+ +I L MK   Q T  P
Sbjct: 264 VLDFDDDKKRISLGMK---QLTAHP 285



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           EV    +G++V V D+GAF+      +GL+H+S++S ++ +   +D VK GD +   +L 
Sbjct: 294 EVGSKVRGKIVNVADYGAFLELAPGVEGLIHVSEMSWSQHLRNPADFVKVGDEIDAVVLT 353

Query: 677 FD-DRGKIKLSMK 688
            D D  K+ L +K
Sbjct: 354 LDKDERKMSLGIK 366



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + +FG F+      DGLVH+S LS T+++   S+ VK GD + V +L+ D D 
Sbjct: 388 HTGVVRNLTNFGLFLELEEGIDGLVHVSDLSWTKKIKHPSEFVKVGDELEVAVLELDVDN 447

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 448 RRLALGHKQLEEN 460


>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
           DSM 5348]
 gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
           5348]
          Length = 280

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L++  R DGR     R +S  +G  ++  GS+L   GDT   V+  +   EDE Y D+ 
Sbjct: 22  LLERGTRSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTT--VLAGVKVEEDEPYPDT- 78

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
               + + +++   LP A  E    G P    I   R+  R++ 
Sbjct: 79  --PNQGNLVVNAELLPLAY-ETFEPGPPDENAIELSRVVDRSLR 119



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 37/196 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RPL +  G  A+++DG+ L   G+T VLA V  +       + +P T N          +
Sbjct: 38  RPLSITLGY-AKKADGSALVKLGDTTVLAGVKVEE-----DEPYPDTPNQGNLVVNAELL 91

Query: 74  PGGYLRRESRPT-ENEILISRMIDRSIRP--------LFSKCYKNETQVIINVMQHDLES 124
           P  Y   E  P  EN I +SR++DRS+R         L  +  K    V +++   D   
Sbjct: 92  PLAYETFEPGPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVWVDISVLDYGG 151

Query: 125 SPHVVSMVAASAALM---------------------LSGLPFEGPVVGAQVDYINGQYVL 163
           +      +AA AAL                      ++ LP + PVV   V  I    V+
Sbjct: 152 NVLDACTIAAVAALYDAKLPKVVRENDNIIIQKEEKVTPLPIKYPVVTVSVAKIGKFLVV 211

Query: 164 NPRLDEDQGSLDLFVS 179
           +P L E++G +D  +S
Sbjct: 212 DPDL-EEEGIMDAKIS 226


>gi|78043962|ref|YP_360744.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996077|gb|ABB14976.1| hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             +A +E A   I+ + +     +I +G+VVKV++    V      +G++ + +++  R+
Sbjct: 274 EQMASMEQALLEIKPVKE----GEIVRGKVVKVLEKEVLVDIGTKGEGVIPLEEITWYRI 329

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +  D VKEGD   V +L  D+ GKI LS K
Sbjct: 330 ERARDAVKEGDEFPVLVLKEDEEGKIILSRK 360



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           EI+  +E I ++ +  +V    KG+V K+M FGAFV   G  +GL+    +S +R  +  
Sbjct: 450 EIKTKKEKIATLKEGSKV----KGKVTKIMPFGAFVDL-GGFEGLLRAQDISWQRNVRPE 504

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSM 687
           + ++ G  + V +L+  DR  +K+S+
Sbjct: 505 EHLQVGQELEVVVLEV-DRHNLKVSL 529


>gi|305667621|ref|YP_003863908.1| putative 30S ribosomal protein S1 [Maribacter sp. HTCC2170]
 gi|88709671|gb|EAR01904.1| putative 30S ribosomal protein S1 [Maribacter sp. HTCC2170]
          Length = 625

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGLVHI+ LS
Sbjct: 225 VVVSHKALIEADIEEQKKEIISQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLVHITDLS 283

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             R+   ++VV+    + V +LDFD ++ +I+L +K ++++
Sbjct: 284 WSRINHPNEVVELDQKLNVVILDFDENKSRIQLGLKQLEKH 324



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +KG V    +FG F+      DGL++IS LS T+++   S+ V  GDT+ V++L+ D  G
Sbjct: 426 HKGIVRNFTNFGVFLELEEGIDGLIYISDLSWTKKIKHPSEFVTVGDTLEVEVLELDVEG 485

Query: 682 KIKLSM 687
           + KLS+
Sbjct: 486 R-KLSL 490



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVW--VKLLDFDDR 680
           KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V   V  LD +DR
Sbjct: 340 KGKVVVIADYGAFIEVVEGVEGLIHVSEMSWSTHLRSAQDFVKVGDEVEAVVLTLDREDR 399

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 400 -KMSLGIK 406


>gi|86153404|ref|ZP_01071608.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843130|gb|EAQ60341.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 556

 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
 gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
          Length = 232

 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 20/157 (12%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE---DEQYVDSLSGTQRNDFMMHY 378
           +R +  + GLL +  GSS F +GDTQ ++    G  E   +++ +D  +        +  
Sbjct: 15  LRAMFCEHGLLDKADGSSKFAQGDTQ-VMAAAYGPVEVKLNKELIDRAT--------LEV 65

Query: 379 NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
            F P       ++G P   E     + R +  P++        +L IV ++ ++ GS   
Sbjct: 66  IFRP-------KIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLS 118

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             V  + LA+MDAG P+   + GI    + + D+ ++
Sbjct: 119 CAVNAACLAMMDAGFPMRCMMCGITCA-ITEQDELVL 154


>gi|50303899|ref|XP_451897.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641029|emb|CAH02290.1| KLLA0B08239p [Kluyveromyces lactis]
          Length = 1729

 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN D+D  V + +   +E+     +++S +D+  V  I++G V  V DFG FV   G
Sbjct: 1212 GKVVNCDNDDRV-LLTLRESEVNGQLNVLKSYSDI-NVGDIFQGSVKNVTDFGVFVKLDG 1269

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              +  GL H S+++  ++    ++  EGD V   +L  + ++ +I L +K       KP
Sbjct: 1270 TVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTNPEKKQISLGLKASYFTNEKP 1328


>gi|296272028|ref|YP_003654659.1| RNA binding S1 domain-containing protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096203|gb|ADG92153.1| RNA binding S1 domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 550

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I  G+V  + +FGAFV   G  DGL+H  + S E  AK  ++ K+GD + VK++  
Sbjct: 367 KVGDIVTGKVATLTEFGAFVTL-GDVDGLLHNEEASWEGNAKCKNLYKKGDELEVKIIKI 425

Query: 678 D-DRGKIKLSMK 688
           D ++  I LS+K
Sbjct: 426 DKEKENISLSIK 437



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + +  G + K+  +G FV   G  DGLV+ +++S +     S+   EGD V VK+L +
Sbjct: 195 ENDGLINGTIKKITSYGMFVDLGGI-DGLVNYNEISYKGPVNPSNYYAEGDEVTVKVLSY 253

Query: 678 DDRGKIKLSMKV 689
            D+ K  LS+ V
Sbjct: 254 -DKAKQHLSLSV 264



 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 2/58 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +GAFV+     +GL+HIS++S  +  K   D++  GD V V++++ D D+ ++++S+K
Sbjct: 295 YGAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLGDEVNVEVIELDVDKKRLRVSLK 352


>gi|294676675|ref|YP_003577290.1| 30S ribosomal protein S1 [Rhodobacter capsulatus SB 1003]
 gi|294475495|gb|ADE84883.1| 30S ribosomal protein S1 [Rhodobacter capsulatus SB 1003]
          Length = 559

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           SL   +  R    +  D   V  + +G+V  + +FG F+      DG+VH+S LS ++  
Sbjct: 348 SLGLKQCLRNPWEAFADAHPVGSVIEGEVKNITEFGLFIGLENDIDGMVHLSDLSWDKRG 407

Query: 659 KTS-DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           + +    ++GD V   + + D D+ +I LS+K +D +T
Sbjct: 408 EEAIQEYRKGDVVRAAVTEVDTDKERISLSIKALDADT 445



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +I  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLTE-GQIVDGVVKNITEYGAFVDLGGV-DGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G+TV V+++  + D  +I L MK
Sbjct: 227 DMAWRRVNHPSEILTIGETVKVQVVKINKDTHRISLGMK 265



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 284 VHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEIDTA 343

Query: 680 RGKIKLSMK 688
           + ++ L +K
Sbjct: 344 KRRVSLGLK 352


>gi|268325739|emb|CBH39327.1| DNA-directed RNA polymerase, subunit E [uncultured archaeon]
          Length = 207

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 16/95 (16%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           P++ +I +G VV++++FGAFV   G  DGL+HISQ++ E ++            TS  + 
Sbjct: 79  PKMQEIVEGGVVEIVEFGAFVE-IGPLDGLLHISQITDEYISYDEKGAKLVTKDTSRTLG 137

Query: 666 EGDTVWVKL----LDFDDRGKIKLSMKVVDQNTGK 696
           EGD V  ++    L+  D G  K+ + +     GK
Sbjct: 138 EGDKVRARIVAISLNERDPGDSKIGLTMRQPGLGK 172


>gi|299536388|ref|ZP_07049701.1| general stress protein 13 [Lysinibacillus fusiformis ZC1]
 gi|298728374|gb|EFI68936.1| general stress protein 13 [Lysinibacillus fusiformis ZC1]
          Length = 125

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+  +  G+V  +  +GAFV       GLVHIS+++   V   S+ +  G  V VK+L+ 
Sbjct: 6   ELGDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVEVKILEI 65

Query: 678 DDRG-KIKLSMKVV 690
           D+   KI LSM+ +
Sbjct: 66  DEEAEKISLSMRAL 79


>gi|283954454|ref|ZP_06371974.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 414]
 gi|283794071|gb|EFC32820.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 414]
          Length = 556

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I +V +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKILDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVSVKVIKYDKERKHLSLSIK 271


>gi|145296007|ref|YP_001138828.1| hypothetical protein cgR_1931 [Corynebacterium glutamicum R]
 gi|140845927|dbj|BAF54926.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+     I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ 
Sbjct: 630 KEGVEKISDLTP-GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFISNPHEVVRS 688

Query: 667 G-DTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G       +    DR +I LS+++ D+  G P
Sbjct: 689 GEVVKVKVMEVDVDRKRIGLSLRLTDE-PGAP 719


>gi|54295658|ref|YP_128073.1| hypothetical protein lpl2746 [Legionella pneumophila str. Lens]
 gi|53755490|emb|CAH16989.1| hypothetical protein lpl2746 [Legionella pneumophila str. Lens]
          Length = 789

 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ E   + +G V  V +FGAFV     +DGLVHIS ++   +     VVK 
Sbjct: 638 KEGVEDIKDL-EQGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAMTNRFITDPRSVVKA 696

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GD      +    +R +I LSMK+ D+
Sbjct: 697 GDIVKVKVVEVDKERRRIGLSMKLNDE 723


>gi|296113600|ref|YP_003627538.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|295921294|gb|ADG61645.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|326562662|gb|EGE12964.1| ribonuclease PH [Moraxella catarrhalis 103P14B1]
 gi|326564700|gb|EGE14918.1| ribonuclease PH [Moraxella catarrhalis 46P47B1]
 gi|326568642|gb|EGE18713.1| ribonuclease PH [Moraxella catarrhalis BC7]
 gi|326568768|gb|EGE18838.1| ribonuclease PH [Moraxella catarrhalis BC8]
 gi|326572636|gb|EGE22625.1| ribonuclease PH [Moraxella catarrhalis CO72]
 gi|326574233|gb|EGE24181.1| ribonuclease PH [Moraxella catarrhalis 101P30B1]
 gi|326575018|gb|EGE24947.1| ribonuclease PH [Moraxella catarrhalis O35E]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 15/199 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R I       +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASI----EAGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++  A   ++ G      RL  R++  +L  +     T+ I  
Sbjct: 57  GWLTAEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISK-------PVAGIAMGLVKDGDDFIILSDIS 480
           ++ ++DG +  A++ G+++AL+DA   + +       P+ G+   +    +   +L D+ 
Sbjct: 117 DVIQADGGTRTASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLD 176

Query: 481 GDEDHLGHMDFKVAGTDSG 499
             ED     D  V  T +G
Sbjct: 177 YAEDSTCDTDLNVVMTQAG 195


>gi|262273502|ref|ZP_06051316.1| ribonuclease PH [Grimontia hollisae CIP 101886]
 gi|262222480|gb|EEY73791.1| ribonuclease PH [Grimontia hollisae CIP 101886]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R ++          GS L   GDT+ I   ++    +E     L G  +
Sbjct: 1   MRPSGREVGQIRPVTITRHFTAHAEGSVLVAFGDTKVICTASV----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+S+AL DA
Sbjct: 117 DVIQADGGTRTASITGASVALADA 140


>gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum]
          Length = 245

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  E +R +S + G+     GS L   G+T+ +   ++    +E+    L    +
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASV----EEKVPPFLKDQGK 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E +   A   ++ G      RL  R++  V+        T+ I  
Sbjct: 58  GWVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+  A       G+    P+ + +A +++G+V +G+  +  
Sbjct: 118 DVLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVV-EGEPVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  +  T+SG
Sbjct: 175 -DLCYTEDSGAETDMNLVMTESG 196


>gi|256820854|ref|YP_003142133.1| RNA binding S1 domain-containing protein [Capnocytophaga ochracea
           DSM 7271]
 gi|256582437|gb|ACU93572.1| RNA binding S1 domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 707

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++  DV  V  I  G V  +  FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 628 VKTFDDV-RVGMILPGIVNNITAFGCFVDIGVKESGLVHISQLKEGYVSDVNEVVKLHQQ 686

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+++ D+ R +I LSM
Sbjct: 687 VQVKVIEKDEVRKRISLSM 705


>gi|227552383|ref|ZP_03982432.1| RNA binding protein [Enterococcus faecium TX1330]
 gi|257888376|ref|ZP_05668029.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257896733|ref|ZP_05676386.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257899812|ref|ZP_05679465.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|293378084|ref|ZP_06624260.1| putative general stress protein 13 [Enterococcus faecium PC4.1]
 gi|293571133|ref|ZP_06682171.1| general stress protein 13 [Enterococcus faecium E980]
 gi|227178471|gb|EEI59443.1| RNA binding protein [Enterococcus faecium TX1330]
 gi|257824430|gb|EEV51362.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257833298|gb|EEV59719.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257837724|gb|EEV62798.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|291608746|gb|EFF38030.1| general stress protein 13 [Enterococcus faecium E980]
 gi|292643339|gb|EFF61473.1| putative general stress protein 13 [Enterococcus faecium PC4.1]
          Length = 126

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I +G+V  +  +GAFV       GL+H+S++ +        ++K G  V V+++D 
Sbjct: 4   KIGQIIEGKVTGIQPYGAFVSLDNETQGLIHVSEVQSGYTKNIHSLLKVGQPVTVQIIDI 63

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KI LS++ +++
Sbjct: 64  DEYSKKISLSLRTLEK 79


>gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
 gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYAMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA              VP+   V+ +++G++    D 
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGII----DS 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           +   D+  +ED     D  V  T  G
Sbjct: 173 VPYLDLRYEEDVRAETDMNVVRTGDG 198


>gi|182679847|ref|YP_001833993.1| 30S ribosomal protein S1 [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635730|gb|ACB96504.1| ribosomal protein S1 [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 577

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  
Sbjct: 199 EEGQVIEGMVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEVLTIGQTVRVKIIKI 257

Query: 678 D-DRGKIKLSMK 688
           + +  +I L MK
Sbjct: 258 NHETHRISLGMK 269



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 INARFHGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVATSQEVDVQVLEV 344

Query: 678 DD-RGKIKLSMK 688
           D  + +I L +K
Sbjct: 345 DPVKRRISLGLK 356



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G+V    +FG F+   G  DG+VH+S L   +  + + +  K+GD V  K+LD D ++ 
Sbjct: 377 EGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNKPGEQAIEDYKKGDIVRAKVLDVDMEKE 436

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 437 RISLGIK 443


>gi|163757676|ref|ZP_02164765.1| 30S ribosomal protein S1 [Hoeflea phototrophica DFL-43]
 gi|162285178|gb|EDQ35460.1| 30S ribosomal protein S1 [Hoeflea phototrophica DFL-43]
          Length = 568

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  +  +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQTVEGMVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + D  +I L MK ++ +
Sbjct: 239 EILSIGQTVKVQIIRINQDTHRISLGMKQLESD 271


>gi|14590809|ref|NP_142881.1| translation initiation factor IF-2 subunit alpha [Pyrococcus
           horikoshii OT3]
 gi|6016312|sp|O58655|IF2A_PYRHO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|294979442|pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
           Pyrococcus Horikoshii Ot3
 gi|3257375|dbj|BAA30058.1| 275aa long hypothetical translation initiation factor eIF-2 alpha
           chain [Pyrococcus horikoshii OT3]
          Length = 275

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V ++ ++GAF+       ++  +HIS++++  V    D +KE
Sbjct: 1   MPRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  V  K++  D R G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPRKGHIDLSLRRVTQQQRK 91


>gi|55820707|ref|YP_139149.1| hypothetical protein stu0628 [Streptococcus thermophilus LMG 18311]
 gi|55822598|ref|YP_141039.1| hypothetical protein str0628 [Streptococcus thermophilus CNRZ1066]
 gi|116627513|ref|YP_820132.1| hypothetical protein STER_0677 [Streptococcus thermophilus LMD-9]
 gi|55736692|gb|AAV60334.1| general stress protein [Streptococcus thermophilus LMG 18311]
 gi|55738583|gb|AAV62224.1| general stress protein [Streptococcus thermophilus CNRZ1066]
 gi|116100790|gb|ABJ65936.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus thermophilus LMD-9]
 gi|312278032|gb|ADQ62689.1| Putative polyribonucleotide nucleotidyltransferase (General stress
           protein 13) [Streptococcus thermophilus ND03]
          Length = 121

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G +  +  +GAFV       GL+HIS++ T  +    + +K G  V V+++DFD+   K
Sbjct: 8   RGVITGIKPYGAFVSLDNGTTGLIHISEIKTGYIDNIYNTLKVGQEVLVQVVDFDEFTQK 67

Query: 683 IKLSMKVVDQNTGK 696
             LS++ +++   K
Sbjct: 68  ASLSLRTLEEEKNK 81


>gi|257467703|ref|ZP_05631799.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317061996|ref|ZP_07926481.1| LytB protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687672|gb|EFS24507.1| LytB protein [Fusobacterium ulcerans ATCC 49185]
          Length = 540

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ + +G+V K++ +G FV      +GLVH+S  +  ++    ++ V+ GDTV VK+++F
Sbjct: 274 VDSVVEGKVTKILPYGVFVEIADGVEGLVHMSDFTWNKKRVSLNEFVQLGDTVKVKIIEF 333

Query: 678 DD-RGKIKLSMKVVDQN 693
                K+KL +K +  N
Sbjct: 334 QPAERKLKLGIKQLSAN 350


>gi|241667227|ref|ZP_04754805.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875778|ref|ZP_05248488.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254841799|gb|EET20213.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 235

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 28/235 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ +   ++         DS  G   
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGW-- 58

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  RA+   +  T     T+++ 
Sbjct: 59  --LTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ DA       G+      P+   VA I++G+  +    
Sbjct: 116 CDVIQADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEP-- 173

Query: 474 IILSDISGDEDHLGHMDFKVA-GTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             + D+  DED     D  V   ++ G+  +Q   +    SE      L  AK+G
Sbjct: 174 --VLDLDYDEDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKG 226


>gi|332665281|ref|YP_004448069.1| RNA binding S1 domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334095|gb|AEE51196.1| RNA binding S1 domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 778

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R++  S+V+     + V +LDF
Sbjct: 356 EKGQVLEGIVKNITDFGAFLDLGGV-DGLLYITDISWGRISHPSEVLSLNQKISVVVLDF 414

Query: 678 DDRGK-IKLSMK 688
           D+  K I L +K
Sbjct: 415 DENKKRISLGLK 426



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERV 657
           SL+  + A++    I +   +N  + G+V  +  +G F+       G+VHIS LS T+R 
Sbjct: 509 SLSLKQMAQDPWSEIENQFPLNSRHTGEVKNLTPYGVFIELEEGIGGMVHISDLSWTKRY 568

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              S+  K G+ + V +LD D D  K+ L  K +++N
Sbjct: 569 GHPSEFTKVGEKIDVAILDIDKDNRKLSLGHKQLEEN 605



 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           N I KG++V + D+GAF+      +GL+H+S++S + +     +  K G     K++  D
Sbjct: 443 NSIVKGKIVNIEDYGAFLEIQPGVEGLIHVSEVSWSNQPINAREFFKLGQEYSAKVVTVD 502

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            D  K+ LS+K + Q+    I
Sbjct: 503 RDERKMSLSLKQMAQDPWSEI 523


>gi|110677820|ref|YP_680827.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
 gi|123362332|sp|Q16D02|RNPH_ROSDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109453936|gb|ABG30141.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
          Length = 237

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSALIKIGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAISCGI 166


>gi|88705452|ref|ZP_01103163.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
 gi|88700542|gb|EAQ97650.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
          Length = 269

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +RDIS +        GS L   G+T+ I   ++    ++     L G    
Sbjct: 32  RPSGRAPDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASV----EDSVPRFLRGKNSG 87

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TG  SRMG  + R    GR      L  R++   +  +    +T+ + 
Sbjct: 88  WITAEYGMLPRSTG--SRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLD 145

Query: 427 SEITESDGSSSMATVCGSSLALMDA 451
            ++ ++DG +  A++ G+ +AL+DA
Sbjct: 146 CDVIQADGGTRTASITGAFVALVDA 170


>gi|67924399|ref|ZP_00517828.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
 gi|67853760|gb|EAM49090.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
          Length = 717

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+ E   I +G +  V+ FGAF+     +DGL+HISQL+   V  T++VVK 
Sbjct: 634 KEGVTEISDLSE-GMILEGVITNVVKFGAFIDIGVHQDGLIHISQLANYFVNDTNEVVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVV 690
           G+ V VK+L+ D++ K + LSMK V
Sbjct: 693 GEVVKVKVLEIDEKLKRVSLSMKEV 717


>gi|325180379|emb|CCA14782.1| rRNA biogenesis protein rrp5 putative [Albugo laibachii Nc14]
          Length = 1939

 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 622  IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFDD 679
            I  G+V K+  +G FV    +   GL HIS++  ER+ K  +++ KEGD+V  K+L  ++
Sbjct: 1469 IVTGKVSKIQSYGVFVRLNQSNLSGLCHISEIGEERIQKPLTELFKEGDSVKAKVLKVEN 1528

Query: 680  RGKIKLSMKV 689
             G+I L  K+
Sbjct: 1529 -GRISLGFKL 1537


>gi|69245265|ref|ZP_00603343.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257880140|ref|ZP_05659793.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257882372|ref|ZP_05662025.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257885569|ref|ZP_05665222.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257891231|ref|ZP_05670884.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257894043|ref|ZP_05673696.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|258614524|ref|ZP_05712294.1| general stress protein 13, putative [Enterococcus faecium DO]
 gi|260560251|ref|ZP_05832427.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|261208188|ref|ZP_05922861.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289567552|ref|ZP_06447892.1| hypothetical protein EDAG_02490 [Enterococcus faecium D344SRF]
 gi|293552945|ref|ZP_06673600.1| general stress protein 13 [Enterococcus faecium E1039]
 gi|293560655|ref|ZP_06677142.1| general stress protein 13 [Enterococcus faecium E1162]
 gi|293570152|ref|ZP_06681230.1| general stress protein 13 (GSP13) [Enterococcus faecium E1071]
 gi|294615841|ref|ZP_06695684.1| general stress protein 13 [Enterococcus faecium E1636]
 gi|294618579|ref|ZP_06698135.1| general stress protein 13 [Enterococcus faecium E1679]
 gi|294621147|ref|ZP_06700334.1| general stress protein 13 [Enterococcus faecium U0317]
 gi|314939275|ref|ZP_07846523.1| putative general stress protein 13 [Enterococcus faecium TX0133a04]
 gi|314943678|ref|ZP_07850429.1| putative general stress protein 13 [Enterococcus faecium TX0133C]
 gi|314947597|ref|ZP_07851006.1| putative general stress protein 13 [Enterococcus faecium TX0082]
 gi|314953665|ref|ZP_07856553.1| putative general stress protein 13 [Enterococcus faecium TX0133A]
 gi|314994229|ref|ZP_07859533.1| putative general stress protein 13 [Enterococcus faecium TX0133B]
 gi|314998124|ref|ZP_07863009.1| putative general stress protein 13 [Enterococcus faecium TX0133a01]
 gi|68195940|gb|EAN10374.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257814368|gb|EEV43126.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257818030|gb|EEV45358.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257821425|gb|EEV48555.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257827591|gb|EEV54217.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257830422|gb|EEV57029.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260073596|gb|EEW61922.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|260077445|gb|EEW65163.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289160652|gb|EFD08612.1| hypothetical protein EDAG_02490 [Enterococcus faecium D344SRF]
 gi|291587301|gb|EFF19187.1| general stress protein 13 (GSP13) [Enterococcus faecium E1071]
 gi|291591331|gb|EFF22997.1| general stress protein 13 [Enterococcus faecium E1636]
 gi|291595160|gb|EFF26497.1| general stress protein 13 [Enterococcus faecium E1679]
 gi|291599263|gb|EFF30293.1| general stress protein 13 [Enterococcus faecium U0317]
 gi|291602921|gb|EFF33118.1| general stress protein 13 [Enterococcus faecium E1039]
 gi|291605406|gb|EFF34853.1| general stress protein 13 [Enterococcus faecium E1162]
 gi|313587879|gb|EFR66724.1| putative general stress protein 13 [Enterococcus faecium TX0133a01]
 gi|313591353|gb|EFR70198.1| putative general stress protein 13 [Enterococcus faecium TX0133B]
 gi|313594335|gb|EFR73180.1| putative general stress protein 13 [Enterococcus faecium TX0133A]
 gi|313597644|gb|EFR76489.1| putative general stress protein 13 [Enterococcus faecium TX0133C]
 gi|313641428|gb|EFS06008.1| putative general stress protein 13 [Enterococcus faecium TX0133a04]
 gi|313645838|gb|EFS10418.1| putative general stress protein 13 [Enterococcus faecium TX0082]
          Length = 126

 Score = 43.9 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I +G+V  +  +GAFV       GL+H+S++ +        ++K G  V V+++D 
Sbjct: 4   KIGQIIEGKVTGIQPYGAFVSLDNETQGLIHVSEVQSGYTKNIHSLLKVGQPVTVQIIDI 63

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KI LS++ +++
Sbjct: 64  DEYSKKISLSLRTLEK 79


>gi|304393050|ref|ZP_07374979.1| ribosomal protein S1 [Ahrensia sp. R2A130]
 gi|303294815|gb|EFL89186.1| ribosomal protein S1 [Ahrensia sp. R2A130]
          Length = 567

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A +E  R   RS I    E  +I +G V  + D+GAFV   G  DGL+H++ ++
Sbjct: 172 IVVSRRAILEETRAEQRSEIVQNLEEGQIVEGVVKNITDYGAFVDLGGI-DGLLHVTDMA 230

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             RV   +++++ G+TV V+++  + +  +I L MK ++ +
Sbjct: 231 WRRVNHPTEILQIGETVKVQIIRVNQETHRISLGMKQLESD 271



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           + +G+V    +FG F+   G  DG+VH+S L   R  + + +   +GD V   +LD D D
Sbjct: 372 VVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWSRSGEEAIEDFNKGDMVKAVVLDVDVD 431

Query: 680 RGKIKLSMKVVD 691
           + +I L +K +D
Sbjct: 432 KERISLGIKQLD 443


>gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017]
 gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017]
          Length = 258

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR+DGRD + +R++    G  Q   GS L   G+T+ +   ++     E      +G+  
Sbjct: 2   VRVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASV----VEGVPRWRNGSGL 57

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G    R     RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPIS--------KPVAGIAMGLVKDGDDFIILSDI 479
           ++ ++DG +  A + G  +AL DA   +         KP++     +     D  +  D+
Sbjct: 118 DVIQADGGTRTAAITGGYVALADAITWLGAAGRLADPKPLSAAVSAVSVGVVDGRVRLDL 177

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
             +ED    +D  V  TD+G
Sbjct: 178 PYEEDSRAEVDMNVVATDAG 197


>gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 246

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP +T   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTGEYSMLPRSTN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  VA +++G+V    D 
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIV----DG 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             L D+  +ED     D  V  T  G
Sbjct: 173 TPLLDLCYEEDVRADTDMNVVCTGDG 198


>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
          Length = 235

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVPQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+A  L  D D  ++L   S  E
Sbjct: 134 LNAACMALVDAGVPMRALFCGVACAL--DSDGTLVLDPTSKQE 174


>gi|148361144|ref|YP_001252351.1| transcription accessory protein [Legionella pneumophila str. Corby]
 gi|296108478|ref|YP_003620179.1| Transcriptional accessory protein [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282917|gb|ABQ57005.1| transcription accessory protein [Legionella pneumophila str. Corby]
 gi|295650380|gb|ADG26227.1| Transcriptional accessory protein [Legionella pneumophila 2300/99
           Alcoy]
          Length = 789

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ E   + +G V  V +FGAFV     +DGLVHIS ++   +     VVK 
Sbjct: 638 KEGVEDIKDL-EQGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAMTNRFITDPRSVVKA 696

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GD      +    +R +I LSMK+ D+
Sbjct: 697 GDIVKVKVVEVDKERRRIGLSMKLNDE 723


>gi|78777071|ref|YP_393386.1| 30S ribosomal protein S1 [Sulfurimonas denitrificans DSM 1251]
 gi|78497611|gb|ABB44151.1| SSU ribosomal protein S1P [Sulfurimonas denitrificans DSM 1251]
          Length = 551

 Score = 43.9 bits (102), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G + K+  +G FV   G  DGLVH +++S +     S + KEGD V VK + +D D+  
Sbjct: 202 EGTIKKITSYGMFVD-VGGVDGLVHYNEISYKGPVNPSKLYKEGDAVTVKAISYDKDKRH 260

Query: 683 IKLSMKVV 690
           + LS+K V
Sbjct: 261 LSLSIKAV 268



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           G V  + DFGAFV   G  +GL+H   +S ++  +  DV+K GD V VK+
Sbjct: 375 GTVTSLTDFGAFVRIDGI-EGLLHNQDISWDKNVRCKDVLKTGDEVEVKI 423


>gi|86609793|ref|YP_478555.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558335|gb|ABD03292.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 322

 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S + V     V    D V V ++D D +RG+I LS K ++
Sbjct: 208 YGAFIDIGGV-SGLLHISEISHDHVDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLE 266

Query: 692 QNTG 695
            N G
Sbjct: 267 PNPG 270


>gi|302338872|ref|YP_003804078.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
 gi|301636057|gb|ADK81484.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
          Length = 236

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 34/239 (14%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +RD+  Q   L    GS L   GDT+ I  V+L    +++    L G         Y  L
Sbjct: 1   MRDVQFQTSYLIHPAGSCLASYGDTKVICTVSL----EDRVPSFLEGRGCGWLTAEYGML 56

Query: 382 PCATGEVSRMGAPSRREIGH--------GRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           P +TG     G   +REIG          RL  R++   +        TL +  ++ ++D
Sbjct: 57  PGSTG-----GGRKQREIGKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQAD 111

Query: 434 GSSSMATVCGSSLALMDAGVPISK-------------PVAGIAMGLVKDGDDFIILSDIS 480
           G +  A+V G  +AL +A   +++              +A +++G+V    D  ++ D+ 
Sbjct: 112 GGTRTASVSGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIV----DGQVVCDLD 167

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
              D    +D  +   +     +Q   + G  S   +   +  A  G   I  +    L
Sbjct: 168 YAHDSRAEVDMNIVKLEEAFVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDAL 226


>gi|296414013|ref|XP_002836699.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630534|emb|CAZ80890.1| unnamed protein product [Tuber melanosporum]
          Length = 327

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDV 663
           R  +  + + P + KIY G+V  + DFG FV   +  G  DGLVHIS +  +RV   +D+
Sbjct: 190 RPPVPELDENPVLYKIYNGRVSGMKDFGVFVSLQNVKGKVDGLVHISAIRLDRVNHPADL 249

Query: 664 VKEG 667
           +  G
Sbjct: 250 LSRG 253


>gi|260891275|ref|ZP_05902538.1| ribosomal protein S1 [Leptotrichia hofstadii F0254]
 gi|260858951|gb|EEX73451.1| ribosomal protein S1 [Leptotrichia hofstadii F0254]
          Length = 600

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           + +V DFG  +      DGL+H+S LS +R    +   K GD +  K++DF+D + +I L
Sbjct: 348 ITEVFDFGLLISLEKDIDGLLHVSDLSYKRETNLTSKYKAGDVIKFKIVDFNDEKNRITL 407

Query: 686 SMKVV 690
           S K +
Sbjct: 408 SAKAL 412


>gi|163732970|ref|ZP_02140414.1| ribonuclease PH [Roseobacter litoralis Och 149]
 gi|161393505|gb|EDQ17830.1| ribonuclease PH [Roseobacter litoralis Och 149]
          Length = 237

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRELNEMRAVSIETGFTKHAEGSALIKIGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+
Sbjct: 117 DVLQADGGTRCASITGGWIALRLAVNKLMKAGDVISDPLVDPVAAISCGI 166


>gi|157738220|ref|YP_001490904.1| S1 RNA-binding domain-containing protein [Arcobacter butzleri
           RM4018]
 gi|157700074|gb|ABV68234.1| S1 RNA binding domain protein [Arcobacter butzleri RM4018]
          Length = 702

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 610 IRSITDVPEVNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++   D+ ++N + +G ++      + DFGAFV      D L+HISQ+S +R++  SDV+
Sbjct: 616 VKFANDILDINDLKEGYILSGIVRNITDFGAFVDIGLKNDALLHISQISEKRISHASDVL 675

Query: 665 KEGDTVW-VKLLDFD-DRGKIKLSMK 688
                +  +K++  D ++ ++ LS+K
Sbjct: 676 SINQNLENLKVISVDLEKQRVGLSLK 701


>gi|297182786|gb|ADI18940.1| ribosomal protein s1 [uncultured SAR11 cluster bacterium
           HF0010_09O16]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D  E+ K Y  ++VK+MDFGAF         L+H S+L  ++      + K GD V  +L
Sbjct: 58  DKYEIGKDYDVKIVKLMDFGAFAELEKGLICLIHNSELGFKKSLSAKKMFKVGDIVKCRL 117

Query: 675 LDFD 678
           LD D
Sbjct: 118 LDID 121


>gi|242398565|ref|YP_002993989.1| Translation initiation factor 2 subunit alpha [Thermococcus
           sibiricus MM 739]
 gi|242264958|gb|ACS89640.1| Translation initiation factor 2 subunit alpha [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVK 665
           +M R   + PE  +     V  + ++GAF+       +DG +HIS+++   V    D +K
Sbjct: 3   KMPRRAREFPEEGEFVVATVKDIHNYGAFLSLDEYPGKDGFMHISEVAPTFVRNIRDYLK 62

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           EG  +  K++  D  +G I LS+K V Q   K
Sbjct: 63  EGQKIVAKVIRVDPTKGHIDLSLKRVKQQERK 94


>gi|323701932|ref|ZP_08113601.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
 gi|323533018|gb|EGB22888.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
          Length = 250

 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R +       +   GS L   GDT+ I   T+    +++    L G  + 
Sbjct: 3   RVDGRTPGQIRPVKITANYNKYAEGSVLIEIGDTRVICTATV----EDRVPPFLKGLGKG 58

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ +P ATG     E ++ G  S R +   RL  RA+  V+   A     + +  
Sbjct: 59  WVTAEYSMIPRATGTRTTREAAK-GKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  +++ G+ +A++ A            +P++  +A  ++G+V +G   +  
Sbjct: 118 DVIQADGGTRTSSITGAYVAMILALNKLVEQGMLEKIPVNDFIAATSVGIV-NGTPVL-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  V  T +G
Sbjct: 175 -DLCYAEDSAAEVDMNVVLTGTG 196


>gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 248

 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 5   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASV----TEGVPRWRKGSGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP +T   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 61  WVTGEYSMLPRSTN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLD 118

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  VA +++G+V    D 
Sbjct: 119 CDVLQADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIV----DG 174

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             L D+  +ED     D  V  T  G
Sbjct: 175 TPLLDLCYEEDVRADTDMNVVCTGDG 200


>gi|86604252|gb|ABD13904.1| transcriptional accessory protein [Lactobacillus reuteri]
          Length = 725

 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFG FV      DGLVH+S++S + +     +V  GD V V + D D  R +
Sbjct: 652 QGTVRNVVDFGVFVDIGVKHDGLVHVSKMSKQFIRDPRAMVAVGDIVDVWIDDVDLKRQR 711

Query: 683 IKLSM 687
           I+L+M
Sbjct: 712 IQLTM 716


>gi|322835049|ref|YP_004215076.1| ribonuclease PH [Rahnella sp. Y9602]
 gi|321170250|gb|ADW75949.1| ribonuclease PH [Rahnella sp. Y9602]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 23/197 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRNAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +  G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+VK G+    L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNALVAAGKLKANPMKGMVAAVSVGIVK-GE---AL 172

Query: 477 SDISGDEDHLGHMDFKV 493
            D+   ED     D  V
Sbjct: 173 CDLEYVEDSAAETDMNV 189


>gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
 gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
          Length = 277

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           RT+M D      GR ++++R+I      L    GS L   G+T+ I   ++    DE   
Sbjct: 33  RTIMSD--YTRTGRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASI----DENVP 86

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQF 419
             L G ++      Y  LP +T    R  A + ++ G      RL  R++  V+      
Sbjct: 87  PFLRGKEQGWVTAEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLG 146

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLAL 448
              + I  ++ ++DG +  A++ G+ +AL
Sbjct: 147 ERQILIDCDVIQADGGTRTASITGAYVAL 175


>gi|169836494|ref|ZP_02869682.1| LytB protein [candidate division TM7 single-cell isolate TM7a]
          Length = 413

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           + +V DFG  +      DGL+H+S LS +R +  +   K GD +  K++DF+D + ++ L
Sbjct: 161 ITEVFDFGLLISLEKDIDGLLHVSDLSYKRESNLTSKYKAGDLIKFKIVDFNDEKNRVTL 220

Query: 686 SMKVV 690
           S+K +
Sbjct: 221 SVKAL 225


>gi|67923044|ref|ZP_00516537.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
 gi|67855123|gb|EAM50389.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 195 EVGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFGVNDELKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEAG 272


>gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2]
 gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2]
          Length = 237

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I  + G+++   GS L   G+T  +   T+    +++    L  T  
Sbjct: 1   MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSATI----EDKAPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKP----VAGIAMGL 466
           ++ ++DG +  A++ G  +A       L+ AGV +S P    VA ++ G+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAMNKLLKAGVIVSDPMIDHVAAVSCGI 166


>gi|171778158|ref|ZP_02919415.1| hypothetical protein STRINF_00251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283140|gb|EDT48564.1| hypothetical protein STRINF_00251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 118

 Score = 43.9 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  +  +GAFV       GL+HIS++ T  +     ++K G+ V V+++DFD+   K 
Sbjct: 9   GTITGIKPYGAFVALDNGTTGLIHISEIKTGYIENIYQLLKVGEKVLVQVIDFDEFTQKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSLRTLEE 77


>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
 gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
 gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
 gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
          Length = 235

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+A  L  D D  ++L   S  E
Sbjct: 134 LNAACMALVDAGVPMRALFCGVACAL--DSDGTLVLDPTSKQE 174


>gi|227545200|ref|ZP_03975249.1| S1 domain RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300909122|ref|ZP_07126583.1| YhgF like protein [Lactobacillus reuteri SD2112]
 gi|227184809|gb|EEI64880.1| S1 domain RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300892987|gb|EFK86346.1| YhgF like protein [Lactobacillus reuteri SD2112]
          Length = 727

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFG FV      DGLVH+S++S + +     +V  GD V V + D D  R +
Sbjct: 654 QGTVRNVVDFGVFVDIGVKHDGLVHVSKMSKQFIRDPRAMVAVGDIVDVWIDDVDLKRQR 713

Query: 683 IKLSM 687
           I+L+M
Sbjct: 714 IQLTM 718


>gi|224539247|ref|ZP_03679786.1| hypothetical protein BACCELL_04149 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519129|gb|EEF88234.1| hypothetical protein BACCELL_04149 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 519

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E  ++  G V  + +FGAFV      +GL+H+SQL+   V+  +++V     
Sbjct: 437 VRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLIHLSQLADRFVSDPNEIVSIHQH 495

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V VK+L  D DR +I L +
Sbjct: 496 VRVKVLSVDMDRKRIALKL 514


>gi|15668289|ref|NP_247082.1| translation initiation factor IF-2 subunit alpha
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2494298|sp|Q57581|IF2A_METJA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|1592263|gb|AAB98098.1| translation initiation factor aIF-2, subunit alpha (aif2A)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 266

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK G  V  
Sbjct: 7   EFPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVA 66

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           K+L  D+R G I LS+K V +   +  V
Sbjct: 67  KVLRVDERKGHIDLSLKRVTEQQKRAKV 94


>gi|261402309|ref|YP_003246533.1| KH domain protein [Methanocaldococcus vulcanius M7]
 gi|261369302|gb|ACX72051.1| KH domain protein [Methanocaldococcus vulcanius M7]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE----IEAARE 608
           +EI+ IP D+I  +IG  G V + I E+ G K+ ID+DGTV I  +   +    +  A++
Sbjct: 12  IEILKIPKDRIGVLIGKKGSVKKAIEEELGVKLEIDEDGTVTIYGTDKQKDQLAVWKAKD 71

Query: 609 MIRSI 613
           ++R+I
Sbjct: 72  IVRAI 76


>gi|206561359|ref|YP_002232124.1| ribonuclease PH [Burkholderia cenocepacia J2315]
 gi|226736893|sp|B4EBP8|RNPH_BURCJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|198037401|emb|CAR53336.1| ribonuclease PH [Burkholderia cenocepacia J2315]
          Length = 246

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 32/234 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ +   ++  R  E   +   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P TL I  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTLHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD--DFII 475
           + ++DG +  A++ G+ +A  DA             PI+  VA I++G+ +     D   
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLIAAGKLTRSPITDHVAAISVGVYEGAPVLDLDY 182

Query: 476 LSDISGDED----HLGHMDF-KVAGTDSGITAMQ------MDMKIGGISENIMV 518
             D   D D      G   F +V GT  G+   +      +D+  GGI+E + +
Sbjct: 183 AEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQL 236


>gi|254168683|ref|ZP_04875525.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|254168845|ref|ZP_04875686.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|289596827|ref|YP_003483523.1| translation initiation factor 2, alpha subunit [Aciduliprofundum
           boonei T469]
 gi|197622282|gb|EDY34856.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|197622309|gb|EDY34882.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|289534614|gb|ADD08961.1| translation initiation factor 2, alpha subunit [Aciduliprofundum
           boonei T469]
          Length = 254

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  +     V  V  +GAFV       ++G +HIS+++T  +    D V+EG  V  K+
Sbjct: 6   PETGEFVIATVKTVKPYGAFVTLDEYEGKEGFIHISEIATGWIKYIRDHVREGQKVVCKV 65

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L  D  RG I LS+K V+++
Sbjct: 66  LRVDPSRGHIDLSLKRVNEH 85


>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
           pisum]
          Length = 279

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L K VR DGRD    R++  + G++ +  GS+    G T+ I  V     + ++  + + 
Sbjct: 36  LMKDVRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVF----DPKEVPNKVE 91

Query: 368 GTQRNDFMMHYNF--LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
             +  +    + F    C         +  R+        RRA+ P + +     + + I
Sbjct: 92  YAKTGELQCEFKFATFSCRQRRTYTRDSEERQLCNE---LRRALEPAICRGEFANFEIHI 148

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
              + E+DGS   A +  + LALMD  +P+   +   ++G+ K+     IL D + DE+ 
Sbjct: 149 NVLVLENDGSVLAAAITAAGLALMDGCIPMYDVIVATSLGIYKNK----ILVDPTYDEET 204

Query: 486 L 486
           L
Sbjct: 205 L 205


>gi|172035135|ref|YP_001801636.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
 gi|171696589|gb|ACB49570.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
          Length = 359

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 218 EVGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFGVNDELKVMIIDL 276

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 277 DAERGRISLSTKQLEPEAG 295


>gi|294085187|ref|YP_003551947.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664762|gb|ADE39863.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 245

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 24/232 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  + +R I+ + G      GS L   G+T  +   ++    DE+    L  + +
Sbjct: 2   TRPSGRAYDALRSITLESGFSLHAEGSCLVRCGNTHVLCTASV----DERVPSFLRNSGK 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  V    A     ++I  
Sbjct: 58  GWVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDC 117

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L+ AG     PI   VA I+ G+ K G+  +  
Sbjct: 118 DVIQADGGTRTASITGAWVALKIACEKLLLAGAITRQPIIDNVAAISCGVYK-GNSVL-- 174

Query: 477 SDISGDEDHLGHMDFK-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D+  DED    +D   V   D G+  +Q   +    S +++   L  A+ G
Sbjct: 175 -DLDYDEDSNAEIDANFVMSADGGLVEIQATGEEKPFSRDVLNAMLDLAEAG 225


>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
 gi|14285757|sp|Q9NQT4|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
           Full=Chronic myelogenous leukemia tumor antigen 28;
           AltName: Full=Exosome component 5; AltName:
           Full=Ribosomal RNA-processing protein 46; AltName:
           Full=p12B
 gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
 gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
          Length = 235

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+A  L  D D  ++L   S  E
Sbjct: 134 LNAACMALVDAGVPMRALFCGVACAL--DSDGTLVLDPTSKQE 174


>gi|159037328|ref|YP_001536581.1| RNA-binding S1 domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157916163|gb|ABV97590.1| RNA binding S1 domain protein [Salinispora arenicola CNS-205]
          Length = 797

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------- 606
           I+A    ++R VIG    V+RG+     A   +D+   +   +  LAE+E          
Sbjct: 583 ILAATKQELRMVIGRSA-VLRGLR----AADFVDETFGLPTVTDILAELEKPGRDPRPEF 637

Query: 607 -----REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                 E + +ITD VP +  I +G V  V  FGAFV     +DGLVH+S +S   V   
Sbjct: 638 RTATFTEGVETITDLVPGL--ILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRAFVRDP 695

Query: 661 SDVVKEG-DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +VVK G       L     R +I L++++ D   G+
Sbjct: 696 REVVKSGDVVKVKVLDVDVPRKRISLTLRLNDTEAGR 732


>gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Vibrio angustum S14]
 gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+ K G+    +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAINYMLEKGMIKKSPLKGMVAAVSVGIYK-GEP---I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEG 195


>gi|323449583|gb|EGB05470.1| hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens]
          Length = 381

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +Y G V  V  +GAFV   G   GL+HISQ+S +RV      +  G  +   ++D D   
Sbjct: 243 VYDGTVTAVKPYGAFVEIMGM-SGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAA 301

Query: 681 GKIKLSMKVVDQNTG 695
           G+I LS K ++   G
Sbjct: 302 GRIALSTKTLEPEPG 316


>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
          Length = 271

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 3/158 (1%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G  +    +   +    
Sbjct: 13  LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAV-YGPHQPRNNIAKNTTKAI 71

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEIT 430
            +           +GE  R      +        R A+  ++     +P + + I  EI 
Sbjct: 72  VNCQYSMAVFSFTSGERKRRPRGDWKSQERSIQLRHAMEAII-HLELYPRSQIDIFVEIL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + DGS   A+V  ++LAL+DAG+PI     G  + L+ 
Sbjct: 131 QVDGSDYCASVNAATLALIDAGIPIKNYAVGCTVALIN 168


>gi|262377117|ref|ZP_06070342.1| ribonuclease PH [Acinetobacter lwoffii SH145]
 gi|262307855|gb|EEY88993.1| ribonuclease PH [Acinetobacter lwoffii SH145]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASV----DSSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+DA             P+   VA +++G+ KD     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLERKKIKHDPLKGLVAAVSVGIFKDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|114326689|ref|YP_743846.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
 gi|114314863|gb|ABI60923.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
          Length = 250

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 26/239 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R +S + G      GS L   G T+ +   +     + +    L GT +
Sbjct: 9   ARPSGRAADALRSVSLETGFAHHAEGSCLIRMGRTEVLCTAS----AEPRIPGFLRGTGK 64

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G  S R     RL  RA+  V+ + A    ++ + 
Sbjct: 65  GWVTAEYGMLPRATHKRGDREAAR-GKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLD 123

Query: 427 SEITESDGSSSMATVCGSSLAL-------MDAG----VPISKPVAGIAMGLVKDGDDFII 475
            ++  +DG +  A+V G+ +AL       + AG    VP+   VA ++ G+V  G   + 
Sbjct: 124 CDVLNADGGTRCASVTGAYVALSLAFHKMVKAGVLKAVPLHGQVAAVSCGVV-GGQPVLD 182

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           L  I   ED     D     TD+ GI  +Q   +    SE      L  A++G   +  
Sbjct: 183 LDYI---EDSGAEADSNFVLTDAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFT 238


>gi|23501084|ref|NP_697211.1| ribonuclease PH [Brucella suis 1330]
 gi|38258602|sp|Q8G2Y5|RNPH_BRUSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23346953|gb|AAN29126.1| ribonuclease PH [Brucella suis 1330]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R IS + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R  A + ++ G      R   R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A + G  +AL + 
Sbjct: 117 DVIQADGGTRTAAITGGWVALHEC 140


>gi|121613103|ref|YP_001000568.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005501|ref|ZP_02271259.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249476|gb|EAQ72436.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 556

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  R+    I ++ +   + +G V K+  +G FV   G  D
Sbjct: 168 IKIDKDEQSIIVSRKKTLDDERRKRKELINNIAQQEDLIEGIVKKITTYGMFVD-VGGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIK 271


>gi|242398022|ref|YP_002993446.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
           739]
 gi|242264415|gb|ACS89097.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
           739]
          Length = 187

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 12/84 (14%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           PE++++ +G+V+ V+ +GAF+   G  DGLVHISQL  + V            +   V+K
Sbjct: 79  PEMHEVVEGEVIDVVPYGAFIR-IGPMDGLVHISQLMDDYVVFDEKNAQFVGKEKGHVLK 137

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKV 689
            GD V  +++   ++ KI    KV
Sbjct: 138 LGDVVRARIIAISEKSKIIRENKV 161


>gi|237747229|ref|ZP_04577709.1| tex transcriptional accessory protein [Oxalobacter formigenes
           HOxBLS]
 gi|229378580|gb|EEO28671.1| tex transcriptional accessory protein [Oxalobacter formigenes
           HOxBLS]
          Length = 780

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  ITD+ E   + +G V  V  FGAFV     +DGLVHIS LS + V     +VK 
Sbjct: 651 RDGVEEITDL-ESGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSEKFVTDPHQIVKS 709

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQN 693
           G       L     R +I LSM +  +N
Sbjct: 710 GQLVRVRVLDVDVKRRRIGLSMVLTKEN 737


>gi|209519146|ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160]
 gi|209500446|gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160]
          Length = 245

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR    +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MSNDTQRPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASI----SESVPPFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LNLDCDVIQADGGTRTASITGAFVAAHDAVAKLLATGRIESSPINDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|312867874|ref|ZP_07728079.1| S1 RNA binding domain protein [Streptococcus parasanguinis F0405]
 gi|311096629|gb|EFQ54868.1| S1 RNA binding domain protein [Streptococcus parasanguinis F0405]
          Length = 121

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G +  +  +GAFV       GL+HIS++ +  V+   D++  G+ V+V+++D D+   K
Sbjct: 8   EGTITGIQPYGAFVELESGVTGLIHISEIRSGYVSNIQDILSIGEKVFVQVIDVDEYTNK 67

Query: 683 IKLSMKVVDQNTGKPI 698
             LS++ +++   + I
Sbjct: 68  ASLSLRTLEETPQRSI 83


>gi|290477306|ref|YP_003470227.1| RNase PH [Xenorhabdus bovienii SS-2004]
 gi|289176660|emb|CBJ83469.1| RNase PH [Xenorhabdus bovienii SS-2004]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR +  VR I       +   GS L   GDT+ +   ++    +E     L G  + 
Sbjct: 7   RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASV----EEGIPRFLKGQGQG 62

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +   A   ++ G      RL  R++   +       YT+ +  +
Sbjct: 63  WITAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+DA             P+   VA +++G+V +G+    L 
Sbjct: 123 VIQADGGTRTAAISGACVALVDALNKLVADGKLKKSPMKSMVAAVSVGIV-EGEG---LC 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  +   D G
Sbjct: 179 DLEYVEDSAAETDMNIVMMDDG 200


>gi|78185433|ref|YP_377868.1| 30S ribosomal protein S1 [Synechococcus sp. CC9902]
 gi|78169727|gb|ABB26824.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
          Length = 367

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 265 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 323

Query: 692 QNTG 695
              G
Sbjct: 324 PEPG 327


>gi|242309366|ref|ZP_04808521.1| 30S ribosomal protein S1 [Helicobacter pullorum MIT 98-5489]
 gi|239523937|gb|EEQ63803.1| 30S ribosomal protein S1 [Helicobacter pullorum MIT 98-5489]
          Length = 551

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG++ K+  FG FV   G  +GLVH +++S +     S + KEGD V +K+L +D ++ +
Sbjct: 200 KGRIKKITSFGMFVDVEGV-EGLVHYTEISHKGPVNPSKLYKEGDIVSLKVLSYDKEKRR 258

Query: 683 IKLSMK 688
           + LS+K
Sbjct: 259 LALSIK 264



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + DFGAF+   G  DGL+H       +  K  D++K G+ V VK+   D ++
Sbjct: 370 ILKGVVATLTDFGAFIKLDGI-DGLLHNEDAYWNKNEKCKDLMKIGEEVEVKIAKIDKEK 428

Query: 681 GKIKLSMK 688
            +I L+ K
Sbjct: 429 ERISLTRK 436


>gi|218461415|ref|ZP_03501506.1| RNA binding S1 domain protein [Rhizobium etli Kim 5]
          Length = 717

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 639 EGVNEISDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697

Query: 668 DTVWVKLLDFD-DRGKIKLS 686
           D V V++++ D  R +I LS
Sbjct: 698 DVVKVRVVEVDAKRKRIALS 717


>gi|73667233|ref|YP_303249.1| 30S ribosomal protein S1 [Ehrlichia canis str. Jake]
 gi|72394374|gb|AAZ68651.1| SSU ribosomal protein S1P [Ehrlichia canis str. Jake]
          Length = 567

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ I+KG V  + D+G FV      +GLVH+S++S T+     + +   G+ + VK+L  
Sbjct: 321 VDSIHKGIVTSIEDYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSI 380

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ LSMK   +N
Sbjct: 381 DTAKSRMSLSMKRCQEN 397



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           I +G+V  +  +G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++ 
Sbjct: 233 IIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIK 292

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K ++++
Sbjct: 293 IDRENKKISLGVKQLEES 310


>gi|186685479|ref|YP_001868675.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186467931|gb|ACC83732.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I+ I D+  V    +G V  V +FGAFV     +DGLVHISQL+   V   + +VK 
Sbjct: 634 KEGIKEIRDL-NVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPNKIVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  V V++L+ +++ K I LSMK V Q
Sbjct: 693 GQVVKVQVLEINEKLKRISLSMKAVKQ 719


>gi|330997899|ref|ZP_08321733.1| Tex-like protein [Paraprevotella xylaniphila YIT 11841]
 gi|329569503|gb|EGG51273.1| Tex-like protein [Paraprevotella xylaniphila YIT 11841]
          Length = 707

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G +  + +FG FV       GLVHISQL+   V+  ++VV     V V++L  D +R
Sbjct: 639 VLPGIISNITNFGCFVDIGVHEKGLVHISQLADRYVSDPNEVVSLHQQVNVRVLQVDKER 698

Query: 681 GKIKLSMKV 689
            +I LS+K+
Sbjct: 699 KRIALSLKI 707


>gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
 gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
          Length = 277

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++RDI      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 43  GRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKEQGWVT 98

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ +
Sbjct: 99  AEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 158

Query: 432 SDGSSSMATVCGSSLAL 448
           +DG +  A++ G+ +AL
Sbjct: 159 ADGGTRTASITGAYVAL 175


>gi|78212018|ref|YP_380797.1| 30S ribosomal protein S1 [Synechococcus sp. CC9605]
 gi|78196477|gb|ABB34242.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 386

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 284 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 342

Query: 692 QNTG 695
              G
Sbjct: 343 PEPG 346


>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 251

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 53/249 (21%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R DGR+   +R IS++ G L R  GSS    GDT  +V V         Y    +   
Sbjct: 4   RLRDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAV---------YGPGQAKIA 54

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEI 429
           RN+ +       C        G  + +E     + RR   P++ Q  +FP T + IV +I
Sbjct: 55  RNELVDKAAIDVCVR---LNQGIAAAKEKEMELIVRRLYEPII-QRQEFPRTVISIVIQI 110

Query: 430 TESDGS-SSMAT---------------VC---------GSSLALMDAGVPISKPVAGIAM 464
            E  GS SS+ T               +C           ++ALMDA + +   V     
Sbjct: 111 IEDAGSISSLLTSHTIGFGSCVEFLDRLCLYLVSAVINAVTMALMDAEIAMLGVVTSTTC 170

Query: 465 GLVKDGDDFIILSDISGDEDH------LGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            L +DG    +L D S  E+       +    F++A  + G+  +  +   G +SE  + 
Sbjct: 171 CLTEDGS---VLLDPSQKEEAECISLVICASSFQLA--EGGVLFLSSE---GPLSEEQLF 222

Query: 519 MALQQAKRG 527
              +  KRG
Sbjct: 223 SCAEACKRG 231


>gi|302686574|ref|XP_003032967.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
 gi|300106661|gb|EFI98064.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
          Length = 291

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 14/173 (8%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           SVF+ +  ++     L+++VR DGR+ +  RD++  VG +    GSSL   GDT  +  V
Sbjct: 27  SVFQRLHPRIYYERFLEERVRPDGREFDAWRDVAVNVGSISTADGSSLVRLGDTTIVCGV 86

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR-EIGHGRLAR-RAIH 410
                + +  +DS      + F++    LP       + G P+   ++   RL      H
Sbjct: 87  KAEIAQPD--LDS----PEDGFIVPNVDLPAICSPKFKPGPPTEEAQVLSDRLNEVLTAH 140

Query: 411 PVLPQTA------QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
            VLP ++      +  + L I +     DG++  AT+     AL    +P +K
Sbjct: 141 DVLPTSSLIIHPGKAAWVLYIDATCINYDGNAFDATLIAMIAALKSTRLPRAK 193


>gi|254417151|ref|ZP_05030897.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176129|gb|EDX71147.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 299

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 605 AAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + RE  R+ +  + EV ++ +G V  +  FG FV   G   GL+HI Q+S   V   +D+
Sbjct: 183 SQREATRAASFSMLEVGQLVEGTVSNIRPFGVFVELEGI-TGLLHIKQVSQNMVESLTDM 241

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            + G ++   ++D D+   ++ LS KV++   G+ +
Sbjct: 242 FEVGQSIKAIVIDLDEGTNRVSLSTKVLENYPGEMV 277


>gi|71281662|ref|YP_271604.1| putative transcription accessory protein [Colwellia psychrerythraea
           34H]
 gi|71147402|gb|AAZ27875.1| putative transcription accessory protein [Colwellia psychrerythraea
           34H]
          Length = 796

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 4/80 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V +FGAFV     +DGLVHIS ++ + ++   ++VK G+ V VK+++ D  R
Sbjct: 660 ILEGVVSNVANFGAFVDIGVHQDGLVHISSITEKFISDPREIVKAGEVVKVKVVEVDIAR 719

Query: 681 GKIKLSMKVVDQ---NTGKP 697
            +I L+M++ +Q    T KP
Sbjct: 720 KRISLTMRLEEQVSAQTSKP 739


>gi|332879252|ref|ZP_08446949.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682672|gb|EGJ55572.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 716

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G +  + +FG FV       GLVHISQL+   V+  ++VV     V V++L  D +R
Sbjct: 648 VLPGIISNITNFGCFVDIGVHEKGLVHISQLADRYVSDPNEVVSLHQQVNVRVLQVDKER 707

Query: 681 GKIKLSMKV 689
            +I LS+K+
Sbjct: 708 KRIALSLKI 716


>gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
          Length = 224

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           DGR    +R  S ++GLL R  GS+ F++GDT   V+  L    + +    L      D 
Sbjct: 12  DGRCR--LRRFSCELGLLSRPDGSAAFLQGDTS--VLAGLYGPAEAKISKELPDRAALDV 67

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL-----PQTAQFPYTLRIVSEI 429
           ++             ++G P   E    +L ++    V+     P+TA     + +V ++
Sbjct: 68  LLR-----------PKVGLPGVLERSREQLLQQTCEAVVLGVLHPRTA-----ISLVLQV 111

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH- 488
               GS     +  + +AL+DAG+P+S    G+   L  DG    IL D +  ++     
Sbjct: 112 LSDAGSLLSCCLNAACMALLDAGLPLSALFCGVTCALQPDG---AILLDPTARQEQEARA 168

Query: 489 -MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            + F +A  D  +    M    G  S   M   L  A+R 
Sbjct: 169 VLTFAIASADRKVL---MVTTKGSCSVQEMQQCLAAAQRA 205


>gi|291280464|ref|YP_003497299.1| 30S ribosomal protein S1 [Deferribacter desulfuricans SSM1]
 gi|290755166|dbj|BAI81543.1| 30S ribosomal protein S1 [Deferribacter desulfuricans SSM1]
          Length = 566

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
           KG++  + DFG FV F    DGL+    +S TE +   ++  K GD V  K+L  D+ R 
Sbjct: 374 KGKIKNITDFGLFVDFGSFIDGLIRKEDISWTEEIEDLNERFKVGDEVEAKILKIDEKRE 433

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K +++N  K I
Sbjct: 434 RVSLGIKQLEKNPWKEI 450


>gi|300312983|ref|YP_003777075.1| 30s ribosomal protein S1 [Herbaspirillum seropedicae SmR1]
 gi|124483424|emb|CAM32585.1| 30s ribosomal subunit protein S1 [Herbaspirillum seropedicae]
 gi|300075768|gb|ADJ65167.1| 30s ribosomal subunit S1 protein [Herbaspirillum seropedicae SmR1]
          Length = 585

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+GAFV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 301 PQGTRLF-GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVL 359

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 360 EIDEERRRISLGMKQCKPN 378



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L +D ++
Sbjct: 220 VVTGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKVLKYDQEK 278

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 279 NRVSLGVK 286



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG +  + DFG F+   G  DGLVH+S LS TE   +     K+GD +   +L  D +R 
Sbjct: 394 KGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKFKKGDELEAVVLAIDVERE 453

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 454 RVSLGVK 460


>gi|327405306|ref|YP_004346144.1| 30S ribosomal protein S1P [Fluviicola taffensis DSM 16823]
 gi|327320814|gb|AEA45306.1| SSU ribosomal protein S1P [Fluviicola taffensis DSM 16823]
          Length = 602

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  +L E E   E  + I    E  ++ +G V  +  +G F+   G  DGL+HI+ 
Sbjct: 186 NVVVSHKALIEAEL-EEQKKQIISGLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITD 243

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           LS  RV    ++V+    + V +LDF DD+ +I L +K
Sbjct: 244 LSWGRVNHPEEIVELDQKLNVVILDFDDDKKRIALGLK 281



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G+VV + D+GAFV      +GL+H+S++S ++ +    D ++ GDTV   +L   DR + 
Sbjct: 303 GKVVVLADYGAFVEIAAGVEGLIHVSEMSWSQHLRSAQDFMQVGDTVEAVILTL-DREER 361

Query: 684 KLSMKV 689
           K+S+ +
Sbjct: 362 KMSLGI 367



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +K +V    +FG FV      DGL+HIS LS + ++   S+  K GD + V +L+ D + 
Sbjct: 388 HKAKVRNFTNFGVFVELEEGVDGLIHISDLSWQKKIKHPSEFCKVGDEMEVVVLEIDREN 447

Query: 681 GKIKLSMKVVDQN 693
            +I L  K +++N
Sbjct: 448 RRISLGHKQLEEN 460


>gi|300857290|ref|YP_003782274.1| putative RNA-binding S1 domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300437405|gb|ADK17172.1| predicted RNA binding S1 domain protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 136

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAFV   G + GLVHIS++S   V    D +KE D V VK++  DD G
Sbjct: 8   ILEGTVVNITSFGAFVDVEG-KTGLVHISEVSDTYVKNIRDYLKEKDKVKVKVISIDDNG 66

Query: 682 KIKLSMKV--VDQNTGKPI 698
           KI LS+K   +D+ + +P+
Sbjct: 67  KISLSIKQAGLDKKSVRPM 85


>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 237

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 29  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 82

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 83  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 135

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+A  L  D D  ++L   S  E
Sbjct: 136 LNAACMALVDAGVPMRALFCGVACAL--DSDGTLVLDPTSKQE 176


>gi|75907756|ref|YP_322052.1| RNA binding S1 [Anabaena variabilis ATCC 29413]
 gi|75701481|gb|ABA21157.1| RNA binding S1 [Anabaena variabilis ATCC 29413]
          Length = 719

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I+ ITD+ E  ++ +G V  V +FGAFV     +DGLVHISQL+   V     VVK 
Sbjct: 634 KEGIKEITDLQEGMEL-EGIVTNVANFGAFVDIGVHQDGLVHISQLTDRFVDDPKKVVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  V V++L+ + + K I LSMK V Q
Sbjct: 693 GQVVKVRVLEVNAKLKRISLSMKAVKQ 719


>gi|126695675|ref|YP_001090561.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9301]
 gi|126542718|gb|ABO16960.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 259 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALE 317

Query: 692 QNTG 695
              G
Sbjct: 318 PEPG 321


>gi|187929359|ref|YP_001899846.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|309781786|ref|ZP_07676519.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|226736927|sp|B2U8D8|RNPH_RALPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187726249|gb|ACD27414.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|308919427|gb|EFP65091.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDTQ +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRKFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  RA+  V    A   +TL +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  DA           G P+   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAYDAVSVMREKGQLVGDPVRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 173 LDLDYPEDSACDTDMNVVMTGSG 195


>gi|169632071|ref|YP_001705807.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii SDF]
 gi|169797749|ref|YP_001715542.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|184156383|ref|YP_001844722.1| ribonuclease PH [Acinetobacter baumannii ACICU]
 gi|213155451|ref|YP_002317496.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|215485100|ref|YP_002327341.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|239503769|ref|ZP_04663079.1| ribonuclease PH [Acinetobacter baumannii AB900]
 gi|260552994|ref|ZP_05825909.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260557749|ref|ZP_05829963.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|301347449|ref|ZP_07228190.1| ribonuclease PH [Acinetobacter baumannii AB056]
 gi|301513309|ref|ZP_07238546.1| ribonuclease PH [Acinetobacter baumannii AB058]
 gi|301595797|ref|ZP_07240805.1| ribonuclease PH [Acinetobacter baumannii AB059]
 gi|332852852|ref|ZP_08434434.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332866699|ref|ZP_08437161.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332873553|ref|ZP_08441502.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
 gi|226736873|sp|B7H2J6|RNPH_ACIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736874|sp|B7IBN8|RNPH_ACIB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736875|sp|B2I029|RNPH_ACIBC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736876|sp|B0VMP4|RNPH_ACIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736877|sp|B0V5W8|RNPH_ACIBY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226737251|sp|A3M0U3|RNPH_ACIBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169150676|emb|CAM88586.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|169150863|emb|CAO99466.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii]
 gi|183207977|gb|ACC55375.1| RNase PH [Acinetobacter baumannii ACICU]
 gi|193075957|gb|ABO10537.2| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
 gi|213054611|gb|ACJ39513.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|213986624|gb|ACJ56923.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|260405236|gb|EEW98733.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260408922|gb|EEX02226.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|322506253|gb|ADX01707.1| RNase PH [Acinetobacter baumannii 1656-2]
 gi|323516129|gb|ADX90510.1| ribonuclease PH [Acinetobacter baumannii TCDC-AB0715]
 gi|332728966|gb|EGJ60317.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332734468|gb|EGJ65583.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332738250|gb|EGJ69128.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+DA             P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTASITGAAVALVDAMNVLLAQKKIKQDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|91070108|gb|ABE11032.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
           clone ASNC729]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 259 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALE 317

Query: 692 QNTG 695
              G
Sbjct: 318 PEPG 321


>gi|317057260|ref|YP_004105727.1| Tex-like protein [Ruminococcus albus 7]
 gi|315449529|gb|ADU23093.1| Tex-like protein [Ruminococcus albus 7]
          Length = 760

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV      DGLVHISQL  + +    +VVK GD V V +LD D  RG++
Sbjct: 648 GTVRNVIDFGAFVDIGVHEDGLVHISQLCDKFIKHPLEVVKVGDVVKVWVLDVDMQRGRV 707

Query: 684 KLSMK 688
            L+MK
Sbjct: 708 SLTMK 712


>gi|162149228|ref|YP_001603689.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545034|ref|YP_002277263.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787805|emb|CAP57403.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532711|gb|ACI52648.1| ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
          Length = 571

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           Y G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 293 YSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSGK 352

Query: 681 GKIKLSMKVVDQN 693
            +I L +K V +N
Sbjct: 353 RRISLGLKQVQRN 365



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ ++ G  V V+++ F+ D 
Sbjct: 207 ILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWKRINHPSEALQIGQPVRVQVIRFNPDT 265

Query: 681 GKIKLSMK 688
            +I L MK
Sbjct: 266 QRISLGMK 273


>gi|292654863|ref|YP_003534760.1| translation initiation factor aIF-2 subunit alpha [Haloferax
           volcanii DS2]
 gi|291371800|gb|ADE04027.1| translation initiation factor aIF-2 alpha subunit [Haloferax
           volcanii DS2]
          Length = 266

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V  + DFG FV      D  GL HIS++++  +    D V+EG TV  K+
Sbjct: 7   PDPGELVVGKVDDIADFGVFVDLEEYEDKRGLCHISEVASGWIKNVRDHVREGQTVVAKV 66

Query: 675 LDFDDRG-KIKLSMKVVDQNTGK 696
           L+ ++   +I LS+K V+++  K
Sbjct: 67  LEVNESSQQIDLSIKDVNEHQRK 89


>gi|288956860|ref|YP_003447201.1| ribonuclease PH [Azospirillum sp. B510]
 gi|288909168|dbj|BAI70657.1| ribonuclease PH [Azospirillum sp. B510]
          Length = 239

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS +   G+T  +   ++    DE     L  T  
Sbjct: 1   MRPSGRALDQLRTVSLEPGFSRYAEGSCMVRFGNTHVLCTASV----DETVPRFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+  V  ++A     ++I  
Sbjct: 57  GWVTAEYGMLPRSTHSRTDREAAKGKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL  A            +P++  VA ++ G+ + G+  +  
Sbjct: 117 DVIQADGGTRTAAITGSYVALHLAFQHLIQIGALKTMPLTDQVAAVSCGIYQ-GNAVL-- 173

Query: 477 SDISGDEDHLGHMD--FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D+  DED     D  F + G  +GI  +Q   +    SE   +  L  A++G
Sbjct: 174 -DLDYDEDSKAQADANFVLTG-KAGIVEIQGTAEESPFSEPQFMELLALARKG 224


>gi|126663873|ref|ZP_01734868.1| 30S ribosomal protein S1 [Flavobacteria bacterium BAL38]
 gi|126624137|gb|EAZ94830.1| 30S ribosomal protein S1 [Flavobacteria bacterium BAL38]
          Length = 588

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A+IE  +   + I    E  ++ +G V  +  +G F+   G  DGL+HI+ LS  R+   
Sbjct: 201 ADIEVQK---KEIIGQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLIHITDLSWSRINHP 256

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           S+V++    + V +LDFDD + +I+L +K
Sbjct: 257 SEVLELDQKLNVVILDFDDEKTRIQLGLK 285



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAF+      +GL+H+S++S +  +    D +K GD V   +L  D D  
Sbjct: 306 KGKVVVLADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFMKIGDEVEAVVLTLDRDER 365

Query: 682 KIKLSMKVVDQN 693
           K+ L +K + Q+
Sbjct: 366 KMSLGIKQMTQD 377



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G V    +FG FV      DGLV+IS LS T+++   S+ V  GD + V +L+ D  G
Sbjct: 392 HTGIVRNFTNFGIFVELEEGIDGLVYISDLSWTKKIKHPSEFVNVGDNMDVVVLELDVEG 451

Query: 682 -KIKLSMKVVDQNTGKP 697
            K+ L  K   Q T  P
Sbjct: 452 RKLSLGHK---QTTANP 465


>gi|94968644|ref|YP_590692.1| ribonuclease PH [Candidatus Koribacter versatilis Ellin345]
 gi|94550694|gb|ABF40618.1| RNAse PH [Candidatus Koribacter versatilis Ellin345]
          Length = 245

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 25/202 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R +S     +    GS L   G+T+ I   ++    +E     L  + + 
Sbjct: 4   RSDNRTPDQLRPVSIIPDYISTAEGSCLIEVGNTRVICTASI----EESVPSFLRNSGKG 59

Query: 373 DFMMHYNFLPCAT-----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      EVS+ G  S R     RL  R++  V   T     TL +  
Sbjct: 60  WLTSEYAMLPRATLTRTPREVSK-GRASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVDC 118

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L +AG     P+   VA  ++G+V    D  +L
Sbjct: 119 DVIQADGGTRTASITGAFVAVGLAVQKLTEAGTLSISPLRDYVAATSVGIV----DGAVL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDS 498
            D++ +ED    +D  +  T S
Sbjct: 175 LDLAYEEDSRAEVDMNIVMTGS 196


>gi|58039066|ref|YP_191030.1| 30S ribosomal protein S1 [Gluconobacter oxydans 621H]
 gi|58001480|gb|AAW60374.1| SSU ribosomal protein S1P [Gluconobacter oxydans 621H]
          Length = 570

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ ++ G  V V+++ F+ D 
Sbjct: 206 ILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWKRINHPSEALQIGQPVRVQVIRFNPDT 264

Query: 681 GKIKLSMK 688
            +I L MK
Sbjct: 265 QRISLGMK 272



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 292 FTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSAK 351

Query: 681 GKIKLSMKVVDQN 693
            +I L +K V +N
Sbjct: 352 RRISLGLKQVQRN 364



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLD 676
           +V  I +G++  + +FG FV      DG+VH+S LS +   + +    ++G  V  K+LD
Sbjct: 374 KVGSIIEGEIRNITEFGLFVGLSADIDGMVHMSDLSWDEPGEAAMSHYEKGQVVKAKVLD 433

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D ++ +I L +K + ++
Sbjct: 434 VDPEKERISLGIKQLQED 451


>gi|119386493|ref|YP_917548.1| 30S ribosomal protein S1 [Paracoccus denitrificans PD1222]
 gi|119377088|gb|ABL71852.1| SSU ribosomal protein S1P [Paracoccus denitrificans PD1222]
          Length = 571

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +  +G V  + ++GAFV   G  DGL+H++
Sbjct: 181 GNIVVSRRAILEESRAEQRAEVIANLSE-GQTVEGVVKNITEYGAFVDLGGV-DGLLHVT 238

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G+TV V+++  + D  +I L MK
Sbjct: 239 DMAWRRVNHPSEILSIGETVKVQVVKINKDTHRISLGMK 277



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 293 IGSVHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 352

Query: 678 DD-RGKIKLSMKVVDQN 693
           D+ + ++ L +K   +N
Sbjct: 353 DEAKRRVSLGLKQTMRN 369


>gi|323449334|gb|EGB05223.1| hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens]
          Length = 381

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +Y G V  V  +GAFV   G   GL+HISQ+S +RV      +  G  +   ++D D   
Sbjct: 243 VYDGTVTAVKPYGAFVEIMGM-SGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAA 301

Query: 681 GKIKLSMKVVDQNTG 695
           G+I LS K ++   G
Sbjct: 302 GRIALSTKTLEPEPG 316


>gi|116072655|ref|ZP_01469921.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
 gi|116064542|gb|EAU70302.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
          Length = 367

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 265 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 323

Query: 692 QNTG 695
              G
Sbjct: 324 PEPG 327


>gi|153951138|ref|YP_001398034.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938584|gb|ABS43325.1| ribosomal protein S1 [Campylobacter jejuni subsp. doylei 269.97]
          Length = 556

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+N D+   +     +L +    R+ +  I+++ +   + +G V K+  +G FV   G+ 
Sbjct: 169 KINKDEQSIIVSRKKTLDDERKKRKEL--ISNIVQQENLIEGIVKKITTYGMFVD-VGSV 225

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DGLVH S++S +       + KEGD V VK++ +D +R  + LS+K
Sbjct: 226 DGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSVK 271


>gi|319947539|ref|ZP_08021769.1| general stress protein 13 [Streptococcus australis ATCC 700641]
 gi|319746227|gb|EFV98490.1| general stress protein 13 [Streptococcus australis ATCC 700641]
          Length = 122

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG V  +  +GAFV       GL+HIS++ +  +    D++K GD V  +++D D+  GK
Sbjct: 8   KGVVTGLQPYGAFVELETGVTGLIHISEIRSGYIDNIHDILKIGDQVCTQVIDIDEYSGK 67

Query: 683 IKLSMKVVDQNTGK 696
             LS++ ++    K
Sbjct: 68  ASLSLRTLEAGNRK 81


>gi|254458581|ref|ZP_05072006.1| RNA binding S1 [Campylobacterales bacterium GD 1]
 gi|207084889|gb|EDZ62176.1| RNA binding S1 [Campylobacterales bacterium GD 1]
          Length = 552

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G + K+  +G FV   G  DGLVH +++S +     S + K+GD V VK + +D D+
Sbjct: 201 IVEGTIKKITSYGMFVD-VGGVDGLVHYNEISYKGPVNPSKLYKDGDVVTVKAISYDKDK 259

Query: 681 GKIKLSMKVV 690
             + LS+K V
Sbjct: 260 RHLSLSIKAV 269



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + DFGAFV   G+ +GL+H   +S ++  K  DV+K G+ V VK+   + +  KI
Sbjct: 376 GTVTSLTDFGAFVR-VGSVEGLLHNQDISWDKNVKCKDVLKSGEEVEVKIAKINTEDQKI 434

Query: 684 KLSMKVV 690
            L+ K +
Sbjct: 435 SLNRKTL 441


>gi|153824200|ref|ZP_01976867.1| 30S ribosomal protein S1 [Vibrio cholerae B33]
 gi|126518276|gb|EAZ75501.1| 30S ribosomal protein S1 [Vibrio cholerae B33]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 28  PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 86

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 87  DIDEERRRISLGLKQCKAN 105


>gi|52843030|ref|YP_096829.1| transcription accessory protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630141|gb|AAU28882.1| transcription accessory protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 789

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 28/233 (12%)

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LS ISG  D L     +        T       I  + E     A QQA  G L I+N 
Sbjct: 504 LLSHISGLNDTLAKNIVQFRDEHGAFTNRNQLKNIHRMGEK----AFQQAA-GFLRIMN- 557

Query: 535 MSKVLSESRLQLGEFTPRVE-IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
               L  S +   E  P VE I++     I+ +IG      R +++   A+  +D++  +
Sbjct: 558 GDNALDASCVH-PEAYPLVEKIISDKKVSIKEIIGN-----RELLQSINAEQYVDENFGL 611

Query: 594 KIASSSLAEIEAA-------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
                 L E+E               +E +  I D+ E   + +G V  V +FGAFV   
Sbjct: 612 PTIRDVLRELEKPGRDPRPEFRTAQFQEGVEDIKDL-EQGMVLEGVVSNVTNFGAFVDIG 670

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
             +DGLVHIS ++   +     VVK GD      +    +R +I LSMK+ D+
Sbjct: 671 VHQDGLVHISAMTNRFITDPRSVVKAGDIVKVKVVEVDKERRRIGLSMKLNDE 723


>gi|14521054|ref|NP_126529.1| translation initiation factor IF-2 subunit alpha [Pyrococcus abyssi
           GE5]
 gi|9910734|sp|Q9V0E4|IF2A_PYRAB RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|5458271|emb|CAB49760.1| eIF2A translation initiation factor eIF-2, subunit alpha
           [Pyrococcus abyssi GE5]
          Length = 275

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V ++ ++GAF+       ++  +HIS++++  V    D +KE
Sbjct: 1   MPRRAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  V  K++  D R G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPRKGHIDLSLRRVTQQQRK 91


>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
          Length = 266

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R + AQ+   +   GSS    G T+ + VVT G  E ++     +G Q 
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVT-GPTEPQRR--GGAGGQT 69

Query: 372 NDFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSE 428
            +  +  N +      V R   G   +R         +A+   L  T  FP++ + I   
Sbjct: 70  KEAAVTVNLVVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANL-HTHLFPHSSISISLH 128

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           +   DGS   A +  S+LAL+DAG+P++  +A    G
Sbjct: 129 VLSQDGSLLAALLNASTLALIDAGIPMTDYIAACTAG 165


>gi|284928895|ref|YP_003421417.1| 30S ribosomal protein S1P [cyanobacterium UCYN-A]
 gi|284809354|gb|ADB95059.1| SSU ribosomal protein S1P [cyanobacterium UCYN-A]
          Length = 346

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D 
Sbjct: 195 EVGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHSVFGVNDELKVMIIDL 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG+I LS K ++   G
Sbjct: 254 DAERGRISLSTKQLEPEPG 272


>gi|241889533|ref|ZP_04776832.1| protein YhgF [Gemella haemolysans ATCC 10379]
 gi|241863840|gb|EER68223.1| protein YhgF [Gemella haemolysans ATCC 10379]
          Length = 722

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FGAF+     +D +VHIS++S   +    DV+  G  V V ++D D  RG++
Sbjct: 656 GTVRNITQFGAFIDIGLKQDAMVHISKISKNYIKNPLDVLSVGQIVDVYVIDVDKQRGRV 715

Query: 684 KLSM 687
            L+M
Sbjct: 716 ALAM 719


>gi|299822585|ref|ZP_07054471.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
 gi|299816114|gb|EFI83352.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
          Length = 248

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R I      L    GS L   GDT+ I   ++    +E+    + G  +
Sbjct: 1   MRHDGRNKGELRKIELIKDYLIHPEGSVLISTGDTKVICSASI----EEKVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWISAEYAMLPRATTTRNIRESSKGKVGGRTMEIQRLIGRALRAVVDLDALGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------GVPISK-PV----AGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A       VP++K P+    A  ++G++++    + L
Sbjct: 117 DVIQADGGTRTASITGAFVALALAIEKLYQTVPLAKFPIKDFLAATSVGILENEGAVLDL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           + I   ED    +D  +  T +G
Sbjct: 177 NYI---EDSAAEVDMNIVMTGAG 196


>gi|260599940|ref|YP_003212511.1| ribonuclease PH [Cronobacter turicensis z3032]
 gi|260219117|emb|CBA34472.1| Ribonuclease PH [Cronobacter turicensis z3032]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 3   MRPAGRSASEVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 59  GWITAEYGMLPRATHTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 119 DVIQADGGTRTASITGACVALADALNALVAAGKLKTNPLKGMVAAVSVGIV-NGE---AV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEDG 197


>gi|124025115|ref|YP_001014231.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL1A]
 gi|123960183|gb|ABM74966.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           NATL1A]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 267 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 325

Query: 692 QNTG 695
              G
Sbjct: 326 PEPG 329


>gi|157412674|ref|YP_001483540.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
 gi|157387249|gb|ABV49954.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 259 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALE 317

Query: 692 QNTG 695
              G
Sbjct: 318 PEPG 321


>gi|72383525|ref|YP_292880.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL2A]
 gi|72003375|gb|AAZ59177.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 267 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 325

Query: 692 QNTG 695
              G
Sbjct: 326 PEPG 329


>gi|330993797|ref|ZP_08317729.1| 30S ribosomal protein S1 [Gluconacetobacter sp. SXCC-1]
 gi|329759065|gb|EGG75577.1| 30S ribosomal protein S1 [Gluconacetobacter sp. SXCC-1]
          Length = 571

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           Y G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 293 YTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSAK 352

Query: 681 GKIKLSMKVVDQN 693
            +I L +K V +N
Sbjct: 353 RRISLGLKQVQRN 365



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ ++ G  V V+++ F+ D 
Sbjct: 207 ILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWKRINHPSEALQIGQPVRVQVIRFNPDT 265

Query: 681 GKIKLSMK 688
            +I L MK
Sbjct: 266 QRISLGMK 273


>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
           WM276]
 gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
           [Cryptococcus gattii WM276]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 5/161 (3%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D  +R D R    +R  S Q+     + GSS   +G T  +VV   G RE      S
Sbjct: 8   ILNDGGLRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLT-TVVVSVFGPREPRNR--S 64

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LR 424
           L+   R    +    +P A G  +R     +R    G   R+   PV+  T  +P + + 
Sbjct: 65  LASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVI-MTHLYPRSEIA 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           I  ++  +DG     ++  ++LAL+DAG+ +   V+ I++G
Sbjct: 124 IHVQVLSADGGILPTSINATTLALIDAGISLLDYVSSISIG 164


>gi|299772068|ref|YP_003734094.1| ribonuclease PH [Acinetobacter sp. DR1]
 gi|298702156|gb|ADI92721.1| ribonuclease PH [Acinetobacter sp. DR1]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G  S R     RL  R++  ++        T+ I 
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAAR-GKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+++AL+DA             P+   VA I++G+ +D     +
Sbjct: 116 CDVIQADGGTRTASITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDE----V 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+  +ED     D  V  T +G
Sbjct: 172 LLDLCYEEDSNCQTDLNVVMTQAG 195


>gi|325678259|ref|ZP_08157887.1| Tex-like protein N-terminal domain protein [Ruminococcus albus 8]
 gi|324110022|gb|EGC04210.1| Tex-like protein N-terminal domain protein [Ruminococcus albus 8]
          Length = 761

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV      DGLVHISQ+S + +    +VVK GD V V +LD D +RG++
Sbjct: 648 GTVRNVIDFGAFVDIGVHEDGLVHISQISDKFIKHPLEVVKVGDVVKVWVLDVDMERGRV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|282163022|ref|YP_003355407.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
           SANAE]
 gi|282155336|dbj|BAI60424.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
           SANAE]
          Length = 195

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 18/96 (18%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KT 660
           +I+  PE+ +I +GQVV+++ FGAFV   G  D LVH+SQ++ E ++           ++
Sbjct: 74  AISYRPELQEIVEGQVVEIVAFGAFVS-VGPIDCLVHVSQVADEFMSYDEKNSRLVSKES 132

Query: 661 SDVVKEGDT-----VWVKLLDFDDR-GKIKLSMKVV 690
           S  + EGD+     V V L + D R  KI L+M+ V
Sbjct: 133 SKSLGEGDSVRARIVAVSLNEHDARESKIGLTMRQV 168


>gi|229511773|ref|ZP_04401252.1| SSU ribosomal protein S1p [Vibrio cholerae B33]
 gi|229351738|gb|EEO16679.1| SSU ribosomal protein S1p [Vibrio cholerae B33]
          Length = 334

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++  T +    S VV  GD V V +L
Sbjct: 53  PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 111

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           D D +R +I L +K    N
Sbjct: 112 DIDEERRRISLGLKQCKAN 130


>gi|91069895|gb|ABE10824.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
           clone ASNC2150]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 259 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKALE 317

Query: 692 QNTG 695
              G
Sbjct: 318 PEPG 321


>gi|298293818|ref|YP_003695757.1| ribosomal protein S1 [Starkeya novella DSM 506]
 gi|296930329|gb|ADH91138.1| ribosomal protein S1 [Starkeya novella DSM 506]
          Length = 569

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN  +KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V +L+ 
Sbjct: 285 VNARFKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVATSQEVEVAILEV 344

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   QN
Sbjct: 345 DPVKRRISLGLKQTLQN 361



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V    +FG F+   G  DG+VH+S L   R   +  D  K+GD +  ++LD D ++ 
Sbjct: 377 EGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEFKKGDVIKAQVLDVDVEKE 436

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 437 RISLGVK 443


>gi|293611262|ref|ZP_06693560.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|292826513|gb|EFF84880.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|325124022|gb|ADY83545.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+DA             P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTASITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
 gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G+V  G +   L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAIKSLIDSGKLKKNPMKGHVAAVSVGIV--GAEA--L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDG 195


>gi|126329382|ref|XP_001372178.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 237

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 13/150 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +V V  G  E +     +S    N   +    
Sbjct: 29  SLRHFACEQNLLSRPDGSASFLQGDTSVLVGV-YGPAEVK-----VSKEIFNKATLEVIL 82

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V +I    GS     
Sbjct: 83  KP-------KIGLPGVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQIVSDAGSLLACC 135

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           +  + LAL+DAGVP+     G+   L  DG
Sbjct: 136 LNAACLALVDAGVPLRALFCGVTCALDLDG 165


>gi|323706501|ref|ZP_08118061.1| Tex-like protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534163|gb|EGB23954.1| Tex-like protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 712

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFG FV      DGLVHIS++S + +    DVV  GD V V+++D D +R +I
Sbjct: 648 GTVRNVVDFGCFVDIGVHTDGLVHISEMSQKYINHPLDVVSVGDVVKVRVIDVDVERNRI 707

Query: 684 KLSMK 688
            LSMK
Sbjct: 708 SLSMK 712


>gi|296116782|ref|ZP_06835389.1| 30S ribosomal protein S1 [Gluconacetobacter hansenii ATCC 23769]
 gi|295976704|gb|EFG83475.1| 30S ribosomal protein S1 [Gluconacetobacter hansenii ATCC 23769]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           Y G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 128 YTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSAK 187

Query: 681 GKIKLSMKVVDQN 693
            +I L +K V +N
Sbjct: 188 RRISLGLKQVQRN 200



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ ++ G  V V+++ F+ D 
Sbjct: 42  ILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWKRINHPSEALQIGQPVRVQVIRFNPDT 100

Query: 681 GKIKLSMK 688
            +I L MK
Sbjct: 101 QRISLGMK 108



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKL 674
           +V  + +G++  + +FG F+      DG+VH+S LS   T  VA T    ++G  V  K+
Sbjct: 210 KVGSVVEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDETGEVAMTH--YEKGQVVKAKV 267

Query: 675 LDFD-DRGKIKLSMK 688
           LD D ++ +I L +K
Sbjct: 268 LDVDVEKERISLGIK 282


>gi|195978653|ref|YP_002123897.1| hypothetical protein Sez_1551 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225868025|ref|YP_002743973.1| S1 RNA binding domain protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871057|ref|YP_002747004.1| S1 RNA binding domain protein [Streptococcus equi subsp. equi 4047]
 gi|195975358|gb|ACG62884.1| general stress protein [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225700461|emb|CAW94876.1| putative S1 RNA binding domain protein [Streptococcus equi subsp.
           equi 4047]
 gi|225701301|emb|CAW98307.1| putative S1 RNA binding domain protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 120

 Score = 43.5 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G +  +  +GAFV       GL+HIS++ T  +     +++ G+ V V+++D+D+   K+
Sbjct: 9   GTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQILRLGEAVLVQVIDYDEYSHKV 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSLRTLEE 77


>gi|123967873|ref|YP_001008731.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
 gi|123197983|gb|ABM69624.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           AS9601]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 259 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKALE 317

Query: 692 QNTG 695
              G
Sbjct: 318 PEPG 321


>gi|325524722|gb|EGD02709.1| ribonuclease PH [Burkholderia sp. TJI49]
          Length = 246

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   +   G    
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           + ++DG +  A++ G+ +A  DA   +SK +A
Sbjct: 123 VIQADGGTRTASITGAFVAAHDA---VSKLIA 151


>gi|16082590|ref|NP_394548.1| DNA-directed RNA polymerase subunit E' [Thermoplasma acidophilum
           DSM 1728]
          Length = 192

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           R++   PE+ +I  G+VV V  FGAF+ F  + +GL+HISQ+  +R+
Sbjct: 83  RALVYYPEMQEIVDGEVVSVQKFGAFIKFS-SFEGLLHISQIMDDRI 128


>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
 gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
          Length = 259

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 26/189 (13%)

Query: 296 EDIQAKVVRTVMLDK---KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +DI A+V R  +L K     R+DGR  + +R I  Q G++++  GS+L   G+TQ +V V
Sbjct: 3   DDILAEVRRDYVLSKIRDGERIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGV 62

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI--- 409
            +  +  E + D+     +   + +   +P A+      G P    I   R+  R I   
Sbjct: 63  KM--QPGEPFPDA---PNKGIIITNAELVPLASPTFEP-GPPDENAIELARVVDRGIRES 116

Query: 410 -----HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
                  +  +  +  + + I     + DG+   A+  G+  AL++  VP  +       
Sbjct: 117 EAVDLEKLCIEEGEKVWLIFIDIWALDDDGNLLDASALGAIAALLNTTVPAER------- 169

Query: 465 GLVKDGDDF 473
              + GDDF
Sbjct: 170 --FEVGDDF 176


>gi|269124830|ref|YP_003298200.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
           DSM 43183]
 gi|268309788|gb|ACY96162.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 162

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V  +  FGAFV   G  +GL+    +S   +   SDV+  G  V VK+LD D  R
Sbjct: 15  IVTGRVRSLERFGAFVDLGGV-EGLLKTHNISWRPIEYPSDVLSVGKEVTVKILDVDLQR 73

Query: 681 GKIKLSMK 688
           G+I LS+K
Sbjct: 74  GQISLSLK 81


>gi|126735021|ref|ZP_01750767.1| ribosomal protein S1 [Roseobacter sp. CCS2]
 gi|126715576|gb|EBA12441.1| ribosomal protein S1 [Roseobacter sp. CCS2]
          Length = 553

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 7/79 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVK 673
           PE  ++ +G+V  + +FG FV   G  DG+VH+S L+ E   +  DV+   ++GD V  K
Sbjct: 361 PEGTEV-EGEVKNITEFGLFVGLEGDIDGMVHLSDLTWE--GRGEDVIGDFRKGDVVQAK 417

Query: 674 LLDFD-DRGKIKLSMKVVD 691
           + + D ++ +I LS+K +D
Sbjct: 418 VAEVDVEKERISLSIKALD 436



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 8/95 (8%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S AE  A  E+I ++T+  EV+ + K     + ++GAFV   G  DGL+H++ ++ 
Sbjct: 172 ILEESRAEQRA--EVIGNLTEGQEVDGVVK----NITEYGAFVDLGGV-DGLLHVTDMAW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            RV   S+++  G+T+ V+++  + +  +I L MK
Sbjct: 225 RRVNHPSEILTIGETIKVQVIKINKETHRISLGMK 259



 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  +++G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 334

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DSAKRRVSLGLKQTQRN 351


>gi|27468083|ref|NP_764720.1| 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
 gi|27315628|gb|AAO04762.1|AE016747_259 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTV- 670
           I D+ E +K+  G+V +V D    VH  G + +G++ ISQLST  +   S+VVK GD V 
Sbjct: 10  INDIKEGDKV-TGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVE 68

Query: 671 -WVKLLDFDDR 680
            +V  ++FD+ 
Sbjct: 69  AYVTKIEFDEE 79


>gi|260428264|ref|ZP_05782243.1| ribosomal protein S1 [Citreicella sp. SE45]
 gi|260422756|gb|EEX16007.1| ribosomal protein S1 [Citreicella sp. SE45]
          Length = 558

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEESRAEQRAEVIANLTE-GQTVDGVVKNITEYGAFVDLGGV-DGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++
Sbjct: 226 DMAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQED 269



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 280 LGSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 339

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 340 DPAKRRVSLGLKQTMRN 356


>gi|254526843|ref|ZP_05138895.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538267|gb|EEE40720.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9202]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 259 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLSTKALE 317

Query: 692 QNTG 695
              G
Sbjct: 318 PEPG 321


>gi|163791752|ref|ZP_02186138.1| general stress protein 13, putative [Carnobacterium sp. AT7]
 gi|159872980|gb|EDP67098.1| general stress protein 13, putative [Carnobacterium sp. AT7]
          Length = 126

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           + KG++  +  +GAFV       GL+HIS+     V   S+V+  G+ + V +LD D+  
Sbjct: 8   VIKGKITGIQPYGAFVSLDEETQGLIHISECKHGFVKDLSEVLAVGNEIEVMVLDIDEYT 67

Query: 681 GKIKLSMKVVDQNT 694
            KI LS++ ++++T
Sbjct: 68  KKISLSLRALEEST 81


>gi|16330820|ref|NP_441548.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
 gi|2500386|sp|P74142|RS1B_SYNY3 RecName: Full=30S ribosomal protein S1 homolog B
 gi|1653313|dbj|BAA18228.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            IY+G+V K+  +G FV   G   GL+H+SQ+S  RV   + +   G  + V + + D+ 
Sbjct: 195 NIYEGKVAKIQPYGVFVEIEGVT-GLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEY 253

Query: 680 RGKIKLSMKVVDQNTGK 696
           + +I LS ++++   G+
Sbjct: 254 KNRISLSTRILETYPGE 270


>gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22]
 gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22]
          Length = 245

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y+ LP AT           R+G  +  EI   RL  R++  V+   A    T+ +
Sbjct: 59  WVTAEYSMLPRATNTRGDRESVRGRIGGRT-HEI--SRLIGRSLRAVIDYKALGENTIVL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V     
Sbjct: 116 DCDVLQADGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGG--- 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            + L D+  +ED     D  V  T  G
Sbjct: 173 -VPLLDLRYEEDVKADTDMNVVCTGDG 198


>gi|260436204|ref|ZP_05790174.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
 gi|260414078|gb|EEX07374.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 261 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 319

Query: 692 QNTG 695
              G
Sbjct: 320 PEPG 323


>gi|302545021|ref|ZP_07297363.1| tRNA nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462639|gb|EFL25732.1| tRNA nucleotidyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 241

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ + G  +   GS L   GDT+ +   ++    +E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASV----NEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYAMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V      
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIVGG---- 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           + L D+  +ED     D  V  T  G
Sbjct: 173 VPLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478]
          Length = 259

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G  +   GS L   G T+ +   ++     E       G+   
Sbjct: 4   REDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASV----TEGVPRWRKGSGVG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   +   R  G      RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A I++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAISVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 VDLPYEEDSRAEVDMNVVATDTG 198


>gi|220926381|ref|YP_002501683.1| 30S ribosomal protein S1 [Methylobacterium nodulans ORS 2060]
 gi|219950988|gb|ACL61380.1| ribosomal protein S1 [Methylobacterium nodulans ORS 2060]
          Length = 569

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN   KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 286 VNAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEV 345

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   QN
Sbjct: 346 DPVKRRISLGLKQTLQN 362



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  
Sbjct: 200 EEGQVIDGVVKNITEYGAFVDLGGI-DGLLHVTDMAWRRVNHPSEVVNIGQTVKVKIIKI 258

Query: 678 D-DRGKIKLSMK 688
           + +  +I L +K
Sbjct: 259 NHETHRISLGIK 270



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V    +FG F+   G  DG+VH+S L   R   +  D  K+GD V  ++LD D ++ 
Sbjct: 378 EGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDEFKKGDVVRAQVLDVDVEKE 437

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 438 RISLGIK---QLAGDPF 451


>gi|150025838|ref|YP_001296664.1| 30S ribosomal protein S1 [Flavobacterium psychrophilum JIP02/86]
 gi|149772379|emb|CAL43859.1| 30S ribosomal protein S1 [Flavobacterium psychrophilum JIP02/86]
          Length = 596

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           + ++ KGQV++     +  +G F+   G  DGL+HI+ LS  R+   S+V++    + V 
Sbjct: 211 IGQLQKGQVLEGVVKNITSYGVFIDLGGV-DGLIHITDLSWSRINHPSEVLELDQKLNVV 269

Query: 674 LLDFDD-RGKIKLSMK 688
           +LDFDD + +I+L +K
Sbjct: 270 ILDFDDEKTRIQLGLK 285



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V   +L   DR +
Sbjct: 306 KGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVKVGDIVEGVILTL-DRSE 364

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 365 RKMSLGI 371


>gi|78778703|ref|YP_396815.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9312]
 gi|78712202|gb|ABB49379.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 262 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLSTKALE 320

Query: 692 QNTG 695
              G
Sbjct: 321 PEPG 324


>gi|88811403|ref|ZP_01126658.1| hypothetical protein NB231_11729 [Nitrococcus mobilis Nb-231]
 gi|88791292|gb|EAR22404.1| hypothetical protein NB231_11729 [Nitrococcus mobilis Nb-231]
          Length = 759

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVHIS ++   V    +V + GD V V+++  D +R
Sbjct: 655 ILEGVVTNVTSFGAFVDIGVHQDGLVHISAMAEHFVRDPREVARTGDVVKVRVVSVDLER 714

Query: 681 GKIKLSMKVV 690
            +I LSM++ 
Sbjct: 715 SRIGLSMRLA 724


>gi|10640403|emb|CAC12217.1| DNA-directed RNA polymerase, subunit E related protein
           [Thermoplasma acidophilum]
          Length = 189

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           R++   PE+ +I  G+VV V  FGAF+ F  + +GL+HISQ+  +R+
Sbjct: 80  RALVYYPEMQEIVDGEVVSVQKFGAFIKFS-SFEGLLHISQIMDDRI 125


>gi|88807804|ref|ZP_01123315.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
 gi|88787843|gb|EAR18999.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
          Length = 368

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 266 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 324

Query: 692 QNTG 695
              G
Sbjct: 325 PEPG 328


>gi|270292435|ref|ZP_06198646.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
 gi|270278414|gb|EFA24260.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
          Length = 119

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G++  +  +GAFV       GL+HIS++ T  +    +V+K G+ V V+++D D+  GK 
Sbjct: 9   GRITGIQPYGAFVELETGVIGLIHISEIRTGFIENIYEVLKIGEEVQVQVVDLDEFSGKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSIRTLEE 77


>gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
 gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 33/240 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R+I       +   GS L   GDT+ I   ++    +E+      G+  
Sbjct: 1   MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASV----EERVPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +TG  SRM      G  S R     RL  R++  V+        T++I
Sbjct: 57  GWVTAEYGMLPRSTG--SRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD--D 472
             ++ ++DG +  A++ G+ +AL DA             P++  +A I++G+ +     D
Sbjct: 115 DCDVIQADGGTRTASITGAYVALQDAVSSLIEKGLLTETPVTDAIAAISVGIYQGTPVLD 174

Query: 473 FIILSDISGDED----HLGHMDF-KVAGTDSGITAMQMDM-KIGGISENIMV--MALQQA 524
              L D + D D     LG   F +V GT  G    +++M ++  +++N +V  + +QQA
Sbjct: 175 LDYLEDSACDTDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQQA 234


>gi|189459676|ref|ZP_03008461.1| hypothetical protein BACCOP_00304 [Bacteroides coprocola DSM 17136]
 gi|189433635|gb|EDV02620.1| hypothetical protein BACCOP_00304 [Bacteroides coprocola DSM 17136]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + +FG FV      +GLVHISQL+ + V+  + VV     V V++L  D +R +I
Sbjct: 644 GIINNITNFGCFVDIGIKENGLVHISQLADKFVSDPTTVVSMHQHVRVRVLSIDHERKRI 703

Query: 684 KLSMK 688
           +L+MK
Sbjct: 704 QLTMK 708


>gi|163788766|ref|ZP_02183211.1| putative 30S ribosomal protein S1 [Flavobacteriales bacterium
           ALC-1]
 gi|159876003|gb|EDP70062.1| putative 30S ribosomal protein S1 [Flavobacteriales bacterium
           ALC-1]
          Length = 613

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGLVHI+ LS
Sbjct: 216 IVVSHKALIEADIEEQKKEIIGQLEKGQVLEGIVKNITSYGVFIDLGGV-DGLVHITDLS 274

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   +++V+    + V +LDFD ++ +I+L +K
Sbjct: 275 WSRINHPNEIVELDQKLNVVILDFDENKSRIQLGLK 310



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV--WVKLLDFDDR 680
           KG+VV + D+GAFV      +GLVH+S++S +  +    D V  GD +   +  LD +DR
Sbjct: 331 KGKVVVIADYGAFVEVEEGVEGLVHVSEMSWSTHLRSAQDFVSVGDEIDAVILTLDREDR 390

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 391 -KMSLGIK 397


>gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14]
 gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14]
          Length = 241

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y  LP AT           R+G  +  EI   RL  R++  V+   A    T+ +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVKGRIGGRT-HEI--SRLIGRSLRAVIDYKALGENTVVL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V     
Sbjct: 116 DCDVLQADGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGG--- 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            + L D+  +ED     D  V  T  G
Sbjct: 173 -VPLLDLCYEEDVRADTDMNVVCTGDG 198


>gi|238897732|ref|YP_002923411.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259494122|sp|C4K3X0|RNPH_HAMD5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229465489|gb|ACQ67263.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 241

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 15/199 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   G+ L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRTAQQLRPLTFTRHYTKYAEGAVLVEFGETRVLCTATV----EEGVPRFLKGQNK 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T       S  G    R +   RL  RA+   +  T    +T+++  
Sbjct: 57  GWITAEYSMLPRSTHQRHARESVKGKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           ++ ++DG +  A + G+ +AL DA       G   S P+ G+   +         + D+ 
Sbjct: 117 DVLQADGGTRTAAITGACVALQDALQKMRVEGKLKSNPMKGLVAAVSVGVVGGESICDLE 176

Query: 481 GDEDHLGHMDFKVAGTDSG 499
             ED +   D  V   + G
Sbjct: 177 YIEDAIAETDMNVVMIEEG 195


>gi|226357252|ref|YP_002786992.1| tRNA nucleotidyltransferase [Deinococcus deserti VCD115]
 gi|226319242|gb|ACO47238.1| putative tRNA nucleotidyltransferase (Phosphate-dependent
           exonuclease) (Ribonuclease PH) (RNase PH) [Deinococcus
           deserti VCD115]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 25/201 (12%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           +GR     R +S + G+     GS+  I G T+ +  VTL    +++    + G +    
Sbjct: 13  EGRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTL----EDKPAPHMRGKKEGWL 68

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY----TLRIVSEIT 430
              Y+ LP AT +  R       + G     +R +   L  +    Y    T+ +  ++ 
Sbjct: 69  TAEYSMLPRATND--RQARERNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVL 126

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            +DG + +A++     AL D           +  P++  V  I++GLV  G++  +  D+
Sbjct: 127 VADGGTRVASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLV--GEEVRV--DL 182

Query: 480 SGDEDHLGHMDFKVAGTDSGI 500
              ED +   D  V  TD+G+
Sbjct: 183 DYAEDKVARADLNVVATDTGL 203


>gi|261365535|ref|ZP_05978418.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
 gi|288565953|gb|EFC87513.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
          Length = 246

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           RD++++RDI      L    GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RDADSLRDIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKGQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|254449788|ref|ZP_05063225.1| ribonuclease PH [Octadecabacter antarcticus 238]
 gi|198264194|gb|EDY88464.1| ribonuclease PH [Octadecabacter antarcticus 238]
          Length = 235

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 30/175 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R IS +V + +   GS L   GDT  +   ++    DE+    L  +  
Sbjct: 1   MRPSGRKIDEMRSISIEVNVTRHAEGSCLIKCGDTHVLCTASI----DERVPPFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG---------RLARRAIHPVLPQTAQFPYT 422
                 Y  LP AT   +RM    RRE  +G         RL  R++   + + A     
Sbjct: 57  GWVTAEYGMLPRATN--TRM----RREAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQ 110

Query: 423 LRIVSEITESDGSSSMATVCGSSLA-------LMDAGVPISK----PVAGIAMGL 466
           + I  ++ ++DG +  A++ G  +A       LM AG  IS     PVA ++ G+
Sbjct: 111 IIIDCDVIQADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLLIPVAAVSCGI 165


>gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans]
 gi|133739214|emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I   ++    +++    L G  + 
Sbjct: 6   RPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASI----EDRVPGFLKGKGQG 61

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +T      E +R G  S R     RL  R++       A    TL +  
Sbjct: 62  WLTAEYGMLPRSTHTRMDREAAR-GKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  DA            +P+   VA I++G+ K G   +  
Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYK-GQPVL-- 177

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  DED     D  +  TD+G
Sbjct: 178 -DLDYDEDSDCDTDMNIVMTDAG 199


>gi|186682825|ref|YP_001866021.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
 gi|226736921|sp|B2J9Q1|RNPH_NOSP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|186465277|gb|ACC81078.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 22/234 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R IS      +   GS L   GDTQ +  V++    ++     L GT + 
Sbjct: 5   RPDGRLPYELRPISFYPSFTRFAPGSVLARCGDTQVLCTVSV----NKGVPKFLEGTGKG 60

Query: 373 DFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT   +   +   S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQKRQERELLKLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + GS +AL  A       GV    P+   VA +++GL+ + + F+ L+ I
Sbjct: 121 QADAGTRTTAITGSFVALAHAISKLLQEGVLERSPLCGQVAAVSVGLL-EAEPFLDLNYI 179

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
              ED    +DF V      GI  +Q   + G  S   +   L  A++G   +L
Sbjct: 180 ---EDVAATVDFNVVMDQHLGIIEVQGTAEEGSFSRTQLDQLLDVAQKGIQELL 230


>gi|283777853|ref|YP_003368608.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM
           6068]
 gi|283436306|gb|ADB14748.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068]
          Length = 1147

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V+ V+DFG FV    +  GLVHIS+L+   +    +VV  GD + V +++  D+ + +
Sbjct: 923 GSVLNVVDFGVFVDIGLSDSGLVHISRLADRYIRDPHEVVGVGDVLKVWVVEV-DKSRRR 981

Query: 685 LSMKVVDQNTGKP 697
           +S+  +   + KP
Sbjct: 982 VSLTAIAPGSEKP 994


>gi|253581079|ref|ZP_04858339.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847615|gb|EES75585.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + +++  +   +A  E    I++V +V  + +G V  +  +GAFV       GLVHIS
Sbjct: 168 GRLILSAKEILREKAEEERKTKISNV-QVGLVTEGVVESLQPYGAFVDLGNGLSGLVHIS 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           Q+  +R+ K S+V+  GD V VK+    D GK+ LS+K
Sbjct: 227 QICEKRIKKPSEVLTVGDKVKVKVTAVKD-GKLSLSIK 263


>gi|146300512|ref|YP_001195103.1| 30S ribosomal protein S1 [Flavobacterium johnsoniae UW101]
 gi|146154930|gb|ABQ05784.1| 30S ribiosomal protein S1 [Flavobacterium johnsoniae UW101]
          Length = 591

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           + ++ KGQV++     +  +G F+   G  DGL+HI+ LS  R+   S+V++    + V 
Sbjct: 211 IGQLQKGQVLEGVVKNITSYGVFIDLGGV-DGLIHITDLSWSRINHPSEVLELDQKLNVV 269

Query: 674 LLDFDD-RGKIKLSMK 688
           +LDFDD + +I+L +K
Sbjct: 270 ILDFDDEKTRIQLGLK 285



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAF+      +GL+H+S++S +  +    D VK GD V   +L  D  DR
Sbjct: 306 KGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVKVGDVVEAVILTLDREDR 365

Query: 681 GKIKLSMKVVDQN 693
            K+ L +K + Q+
Sbjct: 366 -KMSLGIKQLTQD 377


>gi|159902888|ref|YP_001550232.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
 gi|159888064|gb|ABX08278.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 371

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 269 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 327

Query: 692 QNTG 695
              G
Sbjct: 328 PEPG 331


>gi|317495369|ref|ZP_07953738.1| tex protein [Gemella moribillum M424]
 gi|316914428|gb|EFV35905.1| tex protein [Gemella moribillum M424]
          Length = 722

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FGAF+     +D +VH+S++S   +    DV+  G  V V ++D D  RG++
Sbjct: 656 GTVRNITQFGAFIDIGLKQDAMVHVSKISKNYIKNPLDVLSVGQIVDVYVIDIDKQRGRV 715

Query: 684 KLSM 687
            L+M
Sbjct: 716 ALAM 719


>gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|61215900|sp|Q6AEK9|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 251

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 29/208 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R ++ +    ++  GS+L   G T+ +   +  T    ++   +SG  R
Sbjct: 5   IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASF-TNGVPRW---MSGKGR 60

Query: 372 NDFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T +  RM   S +  IG       RL  R++  V+   A    T+ +
Sbjct: 61  GWVTAEYAMLPRSTND--RMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVL 118

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + G+ +AL DA               P+   V+ +++G+V DG  
Sbjct: 119 DCDVLQADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIV-DGSP 177

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGI 500
            +   D++  ED     D  V  T  G+
Sbjct: 178 ML---DLAYTEDVRAETDMNVVVTGRGL 202


>gi|260575707|ref|ZP_05843704.1| RNA binding S1 domain protein [Rhodobacter sp. SW2]
 gi|259022105|gb|EEW25404.1| RNA binding S1 domain protein [Rhodobacter sp. SW2]
          Length = 772

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 18/126 (14%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA----REMI 610
           D  R ++   G+ +R ++ + G       +  ID+   +      LAE+E      R   
Sbjct: 576 DLARKIVAACGRDLRAVMAEPGVLRALDPRDFIDERFGLPTVKDILAELEKPGRDPRPSF 635

Query: 611 RSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ T   EV  I         +G V  V  FGAFV     +DGLVH+SQL+   V     
Sbjct: 636 KTATFSEEVQDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADAFVKDPHA 695

Query: 663 VVKEGD 668
           VVK GD
Sbjct: 696 VVKAGD 701


>gi|253583583|ref|ZP_04860781.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
 gi|251834155|gb|EES62718.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
          Length = 254

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 23/204 (11%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR  +++R+I           GS L   G+T+ I   ++     ++    + G  
Sbjct: 16  KLREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASV----SDKVPPFMRGQG 71

Query: 371 RNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y+ +P ATGE     S  G  S R +   RL  RA+   +        T+ I 
Sbjct: 72  KGWLTAEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLDKLGERTITID 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +   ++ G  +AL  A             PI   VA I++G+V+ G   + 
Sbjct: 132 CDVIQADGGTRTTSISGGFIALALAVKKLMKDRVLSVNPIVSNVAAISVGIVR-GTPML- 189

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED    +D  V     G
Sbjct: 190 --DLMYTEDSAAEVDMNVVMNGKG 211


>gi|163793689|ref|ZP_02187663.1| Ribosomal protein S1 [alpha proteobacterium BAL199]
 gi|159180800|gb|EDP65317.1| Ribosomal protein S1 [alpha proteobacterium BAL199]
          Length = 568

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  E++ S+ +      +  G V  + D+GAFV   G  DGL+H++ ++  R+   ++ 
Sbjct: 186 EARSELVASLKE----GMVLSGVVKNITDYGAFVDLGGV-DGLLHVTDIAWRRINHPTEA 240

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ G TV V+++ F+ +  +I L MK
Sbjct: 241 LQIGQTVKVQVIRFNSETQRISLGMK 266



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + +FG FV   G  DG+VH+S +  E   + +    K+GD V +K+LD D D+ 
Sbjct: 374 EGEVKNITEFGLFVGLPGDIDGMVHLSDIDWEIPGEEAIQSFKKGDMVKIKVLDVDTDKE 433

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 434 RISLGIK 440



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V   + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD 
Sbjct: 282 VGTKFTGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMILDV 341

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D ++ +I L +K   Q  G P
Sbjct: 342 DPNKRRISLGLK---QCMGNP 359


>gi|33239803|ref|NP_874745.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237329|gb|AAP99397.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 367

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 265 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 323

Query: 692 QNTG 695
              G
Sbjct: 324 PEPG 327


>gi|70945753|ref|XP_742662.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521770|emb|CAH81958.1| hypothetical protein PC000099.05.0 [Plasmodium chabaudi chabaudi]
          Length = 669

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL-STERVAKTSDVVKEGDTVWVK 673
           +V  I+ G + K+ DFG FV F    G ++GLVHI+ +    +    ++  K    V VK
Sbjct: 221 KVGNIFSGSIKKITDFGMFVSFKTREGYKEGLVHITDVEKNNKKINLNENYKRNMIVKVK 280

Query: 674 LLDFDDRG----KIKLSMKVVDQNTGKPIV 699
           +     +G    KI L+M  VDQ TGK +V
Sbjct: 281 I-----KGIFGEKISLNMSEVDQKTGKNLV 305


>gi|33866517|ref|NP_898076.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8102]
 gi|33633295|emb|CAE08500.1| 30S ribosomal protein S1, homolog A [Synechococcus sp. WH 8102]
          Length = 367

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 265 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 323

Query: 692 QNTG 695
              G
Sbjct: 324 PEPG 327


>gi|322390994|ref|ZP_08064499.1| RNA binding protein [Streptococcus parasanguinis ATCC 903]
 gi|321142298|gb|EFX37771.1| RNA binding protein [Streptococcus parasanguinis ATCC 903]
          Length = 136

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           +G +  +  +GAFV       GL+HIS++ +  V+   D++  G+ V+V+++D D+   K
Sbjct: 8   EGTITGIQPYGAFVELESGVTGLIHISEIRSGYVSNIHDILSIGEKVFVQVIDVDEYSKK 67

Query: 683 IKLSMKVVDQNTGKPI 698
             LS++ +++   + I
Sbjct: 68  ASLSLRTLEETPQRSI 83


>gi|300777665|ref|ZP_07087523.1| YhgF like protein [Chryseobacterium gleum ATCC 35910]
 gi|300503175|gb|EFK34315.1| YhgF like protein [Chryseobacterium gleum ATCC 35910]
          Length = 707

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++SI D+ +   I  G V  +  FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 628 VKSIKDL-KAGMILPGIVNNITAFGCFVDLGIKESGLVHISQLKDGFVSDVNEVVKLHQH 686

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+ + D+ R +++LSM
Sbjct: 687 VRVKVTEVDEARKRVQLSM 705


>gi|45359270|ref|NP_988827.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis S2]
 gi|45048145|emb|CAF31263.1| translation initiation factor aIF-2, subunit alpha [Methanococcus
           maripaludis S2]
          Length = 265

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            D PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V 
Sbjct: 3   NDFPEEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVV 62

Query: 672 VKLLDFD-DRGKIKLSMK 688
            K++     + +I LS+K
Sbjct: 63  AKVMRVTPHKNQIDLSLK 80


>gi|329770405|ref|ZP_08261787.1| hypothetical protein HMPREF0433_01551 [Gemella sanguinis M325]
 gi|328836528|gb|EGF86188.1| hypothetical protein HMPREF0433_01551 [Gemella sanguinis M325]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FGAFV     +D ++HIS++S   +    DV+  G  V V ++D D DR ++
Sbjct: 343 GTVRNITQFGAFVDIGLKQDAMIHISKISKNYIKNPLDVLSVGQIVDVYVIDVDKDRSRV 402

Query: 684 KLSM 687
            L+M
Sbjct: 403 GLAM 406


>gi|295133734|ref|YP_003584410.1| 30S ribosomal protein S1 [Zunongwangia profunda SM-A87]
 gi|294981749|gb|ADF52214.1| 30S ribosomal protein S1 [Zunongwangia profunda SM-A87]
          Length = 609

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G FV   G  DGL+HI+ LS
Sbjct: 214 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGTVKNITSYGVFVDLGGV-DGLIHITDLS 272

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             R+   +++V+    + V +LDFD+ + +I+L +K
Sbjct: 273 WSRINHPNEIVELDQKLNVVILDFDEAKTRIQLGLK 308



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKL--LDFDDR 680
           KG+VV + D+GAF+      +GL+H+S++S +  +    D V  GD V  ++  LD DDR
Sbjct: 329 KGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVNVGDEVEAQILTLDRDDR 388

Query: 681 GKIKLSMK 688
            K+ L +K
Sbjct: 389 -KMSLGIK 395


>gi|322420992|ref|YP_004200215.1| RNA-binding S1 domain-containing protein [Geobacter sp. M18]
 gi|320127379|gb|ADW14939.1| RNA binding S1 domain protein [Geobacter sp. M18]
          Length = 400

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V ++  FGAFV      DGL+HIS+L   +R+    +V+ EG  V VK+   D +  K
Sbjct: 295 GKVARLTPFGAFVTLASGVDGLIHISKLGAGKRIQHPKEVLSEGQEVEVKVEAVDREAKK 354

Query: 683 IKLSMKVVDQ 692
           I LS+  V +
Sbjct: 355 ISLSLASVSR 364



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + DFGAFV   GA +GL+ +S+++  RV+  SDV+  G  V V +   D ++ +
Sbjct: 209 KGTVTSLRDFGAFVS-IGAVEGLLPVSEVAWARVSHVSDVLSVGQEVEVVVKGIDWEKNR 267

Query: 683 IKLSMK 688
           I  S+K
Sbjct: 268 ISFSLK 273


>gi|255534058|ref|YP_003094430.1| RNA binding S1 domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255347042|gb|ACU06368.1| RNA binding S1 domain protein [Pedobacter heparinus DSM 2366]
          Length = 775

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+ +  E +  I+D+ +V     G V  + +FGAFV     +DGLVH SQ+S + VA  +
Sbjct: 620 EVFSFTEGVNEISDL-KVGMKLPGIVTNITNFGAFVDIGVHQDGLVHTSQISDKFVANAA 678

Query: 662 DVVK-EGDTVWVKLLDFDDRGKIKLSMK 688
           DVVK         +     R +I LSMK
Sbjct: 679 DVVKVHQKVEVTVVEVDVARKRISLSMK 706


>gi|170744131|ref|YP_001772786.1| 30S ribosomal protein S1 [Methylobacterium sp. 4-46]
 gi|168198405|gb|ACA20352.1| ribosomal protein S1 [Methylobacterium sp. 4-46]
          Length = 569

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           VN   KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 286 VNAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQILEV 345

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   QN
Sbjct: 346 DPVKRRISLGLKQTLQN 362



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  
Sbjct: 200 EEGQVIDGVVKNITEYGAFVDLGGI-DGLLHVTDMAWRRVNHPSEVVNIGQTVKVKIIKI 258

Query: 678 D-DRGKIKLSMK 688
           + +  +I L +K
Sbjct: 259 NHETHRISLGIK 270



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V    +FG F+   G  DG+VH+S L   R   +  D  K+GD V  ++LD D ++ 
Sbjct: 378 EGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDEFKKGDVVRAQVLDVDVEKE 437

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q  G P 
Sbjct: 438 RISLGIK---QLAGDPF 451


>gi|330815847|ref|YP_004359552.1| Ribonuclease PH [Burkholderia gladioli BSR3]
 gi|327368240|gb|AEA59596.1| Ribonuclease PH [Burkholderia gladioli BSR3]
          Length = 243

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 19/177 (10%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +R++       +   GS L   GDT+ I   ++  R  E   D  
Sbjct: 1   MTNSSSRPSGRPADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRDRG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT   S   A   ++ G      RL  RA+  V+        T
Sbjct: 61  QGW----LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVK 468
           + I  ++ ++DG +  A++ G+ +A+ D           A  PI+  VA I++G+ +
Sbjct: 117 IHIDCDVIQADGGTRTASITGAFVAVQDAVAKLIAAGKLASSPITDSVAAISVGVYQ 173


>gi|189466315|ref|ZP_03015100.1| hypothetical protein BACINT_02689 [Bacteroides intestinalis DSM
           17393]
 gi|189434579|gb|EDV03564.1| hypothetical protein BACINT_02689 [Bacteroides intestinalis DSM
           17393]
          Length = 708

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E  ++  G V  + +FGAFV      +GLVH+SQL+   V+  +++V     
Sbjct: 628 VRTINDLHEGMEL-PGIVGNITNFGAFVDIGIKENGLVHLSQLADRFVSDPNEIVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V V++L  D DR +I L +
Sbjct: 687 VRVRVLSVDTDRKRIALKL 705


>gi|226952284|ref|ZP_03822748.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|294648770|ref|ZP_06726228.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836950|gb|EEH69333.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|292825340|gb|EFF84085.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+DA             P+   +A I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLSNKKIKQDPLKGLIAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED     D  V  T +G
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAG 195


>gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1]
 gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1]
          Length = 255

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR++  +R ++ + G   +  GS+L   G T+ +   +  T    ++   ++G  + 
Sbjct: 3   RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASF-TNGVPRW---MAGKGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP +T   SRM      G    R     RL  R++  V+   A    T+ I 
Sbjct: 59  WVTAEYSMLPRSTN--SRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA 451
            ++ ++DG +  A + G+ +AL DA
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADA 141


>gi|163797073|ref|ZP_02191028.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
 gi|159177589|gb|EDP62142.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
          Length = 243

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 21/172 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R++  + G  +   GS L   GDT  +   ++    +++    L G  + 
Sbjct: 8   RPSGRAVDALREVRLEPGFAKHAEGSCLVRFGDTHVLCTASV----EDRVPPWLKGGGKG 63

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +T      E +R G  S R     RL  R++  V    A     +R+  
Sbjct: 64  WVTAEYGMLPRSTHTRTDREAAR-GKQSGRTQEIQRLIGRSLRSVTDLVALGERQIRVDC 122

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVK 468
           ++ ++DG +  A + GS +AL  A            +P++  VA I+ G+ K
Sbjct: 123 DVIQADGGTRTAAITGSWVALHQAMSTLLRFGAVKSLPLTDKVAAISCGIYK 174


>gi|323137931|ref|ZP_08073006.1| ribosomal protein S1 [Methylocystis sp. ATCC 49242]
 gi|322396934|gb|EFX99460.1| ribosomal protein S1 [Methylocystis sp. ATCC 49242]
          Length = 581

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 174 GNIVVSRRTVLE-ESRAEQRHEIVANLEEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVT 231

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+V+  G TV VK++  + +  +I L MK
Sbjct: 232 DIAWRRVNHPSEVLTIGQTVKVKIIKINHETHRISLGMK 270



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V++L+ D  +
Sbjct: 290 FHGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVQVLEVDPVK 349

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 350 RRISLGLKQTLQN 362


>gi|297571668|ref|YP_003697442.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
 gi|296932015|gb|ADH92823.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
          Length = 246

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 27/207 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR +  +R +      L    GS L   G+T+ + V +          DS  G   
Sbjct: 5   TRADGRATNELRPVKITRNFLDAGEGSVLVEFGNTKVLCVASFTEGVPRWRKDSGLGW-- 62

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G  S R     RL  RA+  V+  +A    T+ +  
Sbjct: 63  --VTGEYSMLPRATSTRNQRESVKGKVSGRTQEISRLVGRALRAVVDMSALGDNTIVLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMD--------------AGVPISK-PVAGIAMGLVKDGDD 472
           ++ ++DG +  A++ G+ +AL D              AG P+ +  VA I++G++    D
Sbjct: 121 DVLQADGGTRTASITGAYVALADAVAWGIERGHIKPRAGKPVLRDSVAAISVGII----D 176

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            +   D+  +ED     D  V  T +G
Sbjct: 177 GVPCLDLPYEEDVRAETDMNVVMTGTG 203


>gi|288561435|ref|YP_003424921.1| RNA-binding S1 domain-containing protein [Methanobrevibacter
           ruminantium M1]
 gi|288544145|gb|ADC48029.1| RNA-binding S1 domain-containing protein [Methanobrevibacter
           ruminantium M1]
          Length = 728

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +  G V  ++DFG FV     +DG+VH S+++ ++ V    D V  GD + VK+LD D  
Sbjct: 659 VLSGTVRNIVDFGIFVDIGVHQDGMVHKSEITDSQYVNHPMDFVSVGDIIDVKVLDVDIP 718

Query: 680 RGKIKLSM 687
           + +I+LSM
Sbjct: 719 KRRIQLSM 726


>gi|251773010|gb|EES53566.1| ribonuclease PH [Leptospirillum ferrodiazotrophum]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S+ +R +S      +   GS+L   G T  +  V+L    +E+    L    R
Sbjct: 1   MRSDGRTSDQLRTLSIDPSPNRYAEGSALIRMGFTHVLATVSL----EEKVPPFLKDQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP----YTLRIVS 427
                 Y  LP +T E S   A   ++ G  +  +R I   L     F      T  I  
Sbjct: 57  GWVTAEYGMLPRSTHERSPREAARGKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTATIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A       GV    P+   +A +++G+V DG+  +  
Sbjct: 117 DVIQADGGTRCASIGGAFVALALAFSNLKKVGVIAESPLVDYLAAVSVGIV-DGEPCL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  V  T  G
Sbjct: 174 -DLCYTEDSAADVDMNVVMTGKG 195


>gi|242237612|ref|YP_002985793.1| ribonuclease PH [Dickeya dadantii Ech703]
 gi|242129669|gb|ACS83971.1| ribonuclease PH [Dickeya dadantii Ech703]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++  R I+      +   G+ L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQTRPITLTRHYTKHAEGAVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G    R +   RL  R++   +       YT+ + 
Sbjct: 57  GWITAEYGMLPRATHSRNAREAAR-GKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMD--AGV---------PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL D  AG+         P+   VA +++G+V +G+    
Sbjct: 116 CDVLQADGGTRTASITGACVALADAIAGLVASGKLAKNPMKGMVAAVSVGIV-NGE---A 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T+ G
Sbjct: 172 VCDLEYVEDSAAETDMNVVMTEDG 195



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 32/206 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYA 69
           RP+ L T    + ++GAVL  +G+T VL T   +    R LK GQ    +T  Y      
Sbjct: 12  RPITL-TRHYTKHAEGAVLVEFGDTKVLCTATVEEGVPRFLK-GQGQGWITAEY------ 63

Query: 70  VGKIPGGYLRRESRPTE------NEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHD 121
            G +P     R +R           + I R+I RS+R         E  + +  +V+Q D
Sbjct: 64  -GMLPRATHSRNAREAARGKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDCDVLQAD 122

Query: 122 LES-----SPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
             +     +   V++  A A L+ SG     P +G V    V  +NG+ V +    ED  
Sbjct: 123 GGTRTASITGACVALADAIAGLVASGKLAKNPMKGMVAAVSVGIVNGEAVCDLEYVEDSA 182

Query: 173 S-LDLFVSGTQDAVLMVELEANQLSE 197
           +  D+ V  T+D   M+E++     E
Sbjct: 183 AETDMNVVMTEDG-RMIEVQGTAEGE 207


>gi|296109361|ref|YP_003616310.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           infernus ME]
 gi|295434175|gb|ADG13346.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           infernus ME]
          Length = 262

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D PE   I  G V +V  +GAFV       ++GL+HIS++++  V    D VK G  V  
Sbjct: 4   DFPEEGDIVIGTVKEVKPYGAFVELLEYPGKEGLIHISEVTSGWVRNIRDHVKVGQRVVA 63

Query: 673 KLLDFD-DRGKIKLSMK-VVDQN 693
           K+L  + ++G I LS+K V DQ 
Sbjct: 64  KVLRVNKEKGHIDLSLKRVSDQQ 86


>gi|239992091|ref|ZP_04712755.1| putative transcription accessory protein [Streptomyces roseosporus
           NRRL 11379]
          Length = 771

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  + D+ E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK 
Sbjct: 641 KEGVEKLGDL-EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKP 699

Query: 667 GD 668
           GD
Sbjct: 700 GD 701


>gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG']
          Length = 245

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  E +R +S + G+     GS L   G+T+ +   ++    +E+    L    +
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASV----EEKVPPFLKDQGK 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E +   A   ++ G      RL  R++  V+        T+ I  
Sbjct: 58  GWVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+  A       G+    P+ + +A +++G+V+     + +
Sbjct: 118 DVLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEG----LPV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  +  T+SG
Sbjct: 174 LDLCYTEDSGAETDMNLVMTESG 196


>gi|189425601|ref|YP_001952778.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
 gi|189421860|gb|ACD96258.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
          Length = 762

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ IR I+D+ E   I +G V  V  FGAFV     +DGLVH+S L+   +   +D V+ 
Sbjct: 637 RDDIREISDLQE-GMILQGVVTNVTAFGAFVDIGVHQDGLVHVSHLANRFIKDPNDAVQV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G  V VK+L  D  R +I LS+K
Sbjct: 696 GQVVKVKVLSADPQRKRIALSIK 718


>gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037]
 gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037]
          Length = 241

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R ++ + G      GS+L   G T+ +   +  T    ++   L+G  + 
Sbjct: 3   RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASF-TNGVPRW---LTGKGKG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  RA+  V+   A    T+ I  +
Sbjct: 59  WVTAEYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 119 VLQADGGTRTAAITGAYVALADA 141


>gi|161170278|gb|ABX59248.1| RNase PH [uncultured marine bacterium EB000_55B11]
 gi|297183806|gb|ADI19929.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 252

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 38/238 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I  +VG  +   GS L   GDT  +   ++  R        L  T  
Sbjct: 16  MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVXDRTPPW----LRNTGM 71

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG  +R  A S ++ G      RL  R++   + +       + +  
Sbjct: 72  GWVTAEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDC 131

Query: 428 EITESDGSSSMATVCGSSLAL-------MDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL       + AG     P+++ VA ++ G+   G   I+ 
Sbjct: 132 DVLQADGGTRCASITGGWIALRLAINAMIKAGDLKEDPLTEHVAAVSCGIY--GGQPILD 189

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQ----------------MDMKIGGISENIMV 518
            D + D +     +F + G++ G+  +Q                MD+   GISE I+ 
Sbjct: 190 LDYAEDSEAGTDANFVMTGSN-GLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIA 246


>gi|134095742|ref|YP_001100817.1| 30S ribosomal protein S1 [Herminiimonas arsenicoxydans]
 gi|133739645|emb|CAL62696.1| 30S ribosomal subunit protein S1 [Herminiimonas arsenicoxydans]
          Length = 559

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L +D ++
Sbjct: 193 VVTGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLTVGQEITAKVLKYDQEK 251

Query: 681 GKIKLSMK 688
            ++ L +K
Sbjct: 252 NRVSLGVK 259



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           P+  +++ G+V  + D+G+FV      +GLVH+S++  T +    + VV+ GD V V +L
Sbjct: 274 PQGTRLF-GKVTNLTDYGSFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVL 332

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L MK    N
Sbjct: 333 EIDEERRRISLGMKQCKAN 351



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G +  + DFG F+   G  DGLVH+S LS TE   +     K+GD +   +L  D +R 
Sbjct: 367 RGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRRFKKGDELEAIVLAIDVERE 426

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 427 RVSLGVK 433


>gi|288559435|ref|YP_003422921.1| translation initiation factor aIF-2 alpha subunit
           [Methanobrevibacter ruminantium M1]
 gi|288542145|gb|ADC46029.1| translation initiation factor aIF-2 alpha subunit
           [Methanobrevibacter ruminantium M1]
          Length = 260

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + P   ++  G V KV+++GAF +      ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRKSQEWPNEGELIVGTVYKVLNYGAFANLEEYAGKEAFIHISEVSSGWVKNIRDHVRE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV--DQNTGK 696
              +  ++L  +  +G +  S+K +  DQ T K
Sbjct: 61  NQKIVARVLRVNPKKGHVDASLKRIREDQRTKK 93


>gi|255081712|ref|XP_002508078.1| predicted protein [Micromonas sp. RCC299]
 gi|226523354|gb|ACO69336.1| predicted protein [Micromonas sp. RCC299]
          Length = 598

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 17/97 (17%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD-----------VV 664
           P ++ I KG+V  V  FG FV   G  RDGLVH + +S E   +  D             
Sbjct: 190 PPLHSIQKGRVATVRPFGLFVRMNGFVRDGLVHCANVSDELTFRREDGDDAKVMAMEYFH 249

Query: 665 KEGDTVWVKLLDFDDRG-----KIKLSMKVVDQNTGK 696
                V+ K+++    G     K+ LSMK+VDQ++G+
Sbjct: 250 PRDSEVYAKVVEIRRDGYSGDVKVGLSMKLVDQSSGE 286



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 19/100 (19%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLS-----------TERVAKTSD 662
           D P +N  ++  V +V  +G FV   G  R+GLV   Q+S            ++V     
Sbjct: 325 DPPALNSTHRAVVKEVKPYGVFVSMAGFRRNGLVPHHQVSDYLEFSREDTDEDKVKALEG 384

Query: 663 VVKEGDTVWVKLLDFDDRG-------KIKLSMKVVDQNTG 695
            V +GD  WVK+++  +         K+  S+K+ DQ  G
Sbjct: 385 AVGKGDEAWVKVVELKEPNYPGEGPVKVTCSIKLCDQRDG 424


>gi|182434777|ref|YP_001822496.1| putative transcription accessory protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178463293|dbj|BAG17813.1| putative transcription accessory protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 843

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  + D+ E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK 
Sbjct: 674 KEGVEKLGDL-EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKP 732

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GD      +     R +I L++++ D+
Sbjct: 733 GDIVKVKVMDVDVPRKRISLTLRLDDE 759


>gi|220924066|ref|YP_002499368.1| RNA binding S1 domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219948673|gb|ACL59065.1| RNA binding S1 domain protein [Methylobacterium nodulans ORS 2060]
          Length = 769

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------- 606
           I+A     I+ VIG    ++RG+      K   DD   +   +  +AE+E          
Sbjct: 579 ILAATKSDIKGVIG-NTALLRGL----NPKSFTDDTFGLPTVTDIIAELEKPGRDPRPSF 633

Query: 607 -----REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                RE + +I D+ +   + +G V  V  FGAFV     +DGLVHIS LS   V    
Sbjct: 634 RTATFREGVETIADL-KPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISALSNSFVKDPR 692

Query: 662 DVVKEG 667
           +VVK G
Sbjct: 693 NVVKPG 698


>gi|145860184|dbj|BAF57042.1| hypothetical stress protein [Streptococcus bovis]
          Length = 118

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  +  +GAFV       GL+HIS++ T  +     ++K G+ V V+++DFD+   K 
Sbjct: 9   GTITGIKPYGAFVALDNGTTGLIHISEIKTGYIENIYQLLKVGEKVLVQVVDFDEFTQKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSLRTLEE 77


>gi|124267431|ref|YP_001021435.1| 30S ribosomal protein S1 [Methylibium petroleiphilum PM1]
 gi|124260206|gb|ABM95200.1| SSU ribosomal protein S1P [Methylibium petroleiphilum PM1]
          Length = 571

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++ ++
Sbjct: 207 GVVKNITEYGAFVDLGGI-DGLLHITDMAWRRVRHPSEVVTVGQELTAKVLKFDAEKNRV 265

Query: 684 KLSMK 688
            L +K
Sbjct: 266 SLGLK 270



 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + D+GAFV      +GLVH+S++  T +    S +V  G+ V V +L+ D D+ +
Sbjct: 292 GKITNIADYGAFVEIEPGIEGLVHVSEMDWTNKNIAPSKLVTLGEEVEVMVLEIDEDKRR 351

Query: 683 IKLSMKVVDQN 693
           I L MK    N
Sbjct: 352 ISLGMKQCKAN 362



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D +R 
Sbjct: 378 KGPVKSITDFGVFVGLAAGIDGLVHLSDLSWHEPGEAAVRNYKKGQEVEALVLAIDVERE 437

Query: 682 KIKLSMKVVD 691
           +I L +K +D
Sbjct: 438 RISLGIKQLD 447


>gi|330752238|emb|CBL87195.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
 gi|330752261|emb|CBL87217.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
          Length = 740

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R+   S+V++    + V +LDF
Sbjct: 243 EKGQVLEGTVKNLTDFGAFMDLGGV-DGLLYITDISWGRINHPSEVLELNQNLNVVVLDF 301

Query: 678 DDRGK-IKLSMK 688
           D+  K I L +K
Sbjct: 302 DENKKRISLGLK 313



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  +  +G FV       G+VHIS LS T+R +  S+  K G+T+ V +L+ D D 
Sbjct: 420 HSGEVKNLTPYGVFVELKEGIGGMVHISDLSWTKRYSHPSEFTKVGETIDVTILEVDQDS 479

Query: 681 GKIKLSMKVVDQN 693
            K+ L  K +++N
Sbjct: 480 RKLSLGHKQLEEN 492


>gi|257452603|ref|ZP_05617902.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|257466460|ref|ZP_05630771.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917617|ref|ZP_07913857.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059143|ref|ZP_07923628.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|313684819|gb|EFS21654.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|313691492|gb|EFS28327.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS +S E V+  S V+  G  + V++ + D +RG+
Sbjct: 655 EGTVRNVVKFGAFVDIGLKNDALLHISAISDEFVSDPSKVLSVGQIIKVRIKEIDKERGR 714

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 715 VGLTRK 720


>gi|15639909|ref|NP_219359.1| tex protein (tex) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|3323244|gb|AAC65881.1| tex protein (tex) [Treponema pallidum subsp. pallidum str. Nichols]
          Length = 778

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S  D+ +V    +G+V  V+DFGAFV        L+H+SQ+S   V+     VK 
Sbjct: 634 RQGLISFADL-KVGATVQGKVKNVVDFGAFVDIGIKETALLHVSQMSDHFVSNPLKKVKV 692

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
           GD     ++  D+ R +I LS++
Sbjct: 693 GDVYTCTIIGLDEARRRISLSLR 715


>gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 239

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I       +   GS L   GDT+ I   ++    +E+    + G  R
Sbjct: 1   MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASV----EERVPGWMRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRMG  + R    G      RL  R++   +   A    ++ +
Sbjct: 57  GWVTAEYGMLPRSTD--SRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIAL 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA             P+  PVA +++G+ K      
Sbjct: 115 DCDVIQADGGTRTASITGAWIALHDAVQHILQQDLLKTDPMIGPVASVSVGVHKG----T 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            + D+   ED     D  V   D G
Sbjct: 171 PILDLDYAEDSSAETDMNVVMNDQG 195


>gi|330752193|emb|CBL87151.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
          Length = 740

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R+   S+V++    + V +LDF
Sbjct: 243 EKGQVLEGTVKNLTDFGAFMDLGGV-DGLLYITDISWGRINHPSEVLELNQNLNVVVLDF 301

Query: 678 DDRGK-IKLSMK 688
           D+  K I L +K
Sbjct: 302 DENKKRISLGLK 313



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  +  +G FV       G+VHIS LS T+R +  S+  K G+T+ V +L+ D D 
Sbjct: 420 HSGEVKNLTPYGVFVELKEGIGGMVHISDLSWTKRYSHPSEFTKVGETIDVTILEVDQDS 479

Query: 681 GKIKLSMKVVDQN 693
            K+ L  K +++N
Sbjct: 480 RKLSLGHKQLEEN 492


>gi|297619844|ref|YP_003707949.1| translation initiation factor 2 subunit alpha [Methanococcus voltae
           A3]
 gi|297378821|gb|ADI36976.1| translation initiation factor 2, alpha subunit [Methanococcus
           voltae A3]
          Length = 263

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++ PE   I  G V  V  FGAFV       ++G+VHIS++S+  +    D +K+G  V 
Sbjct: 3   SNFPEEGDIVIGNVSDVKSFGAFVELLEYPKKEGMVHISEVSSGWIKNIRDHIKKGQRVV 62

Query: 672 VKLLDFD-DRGKIKLSMK-VVDQ 692
            K++  + ++ +I LS+K V DQ
Sbjct: 63  AKVVRVNPNKNQIDLSLKRVTDQ 85


>gi|123965580|ref|YP_001010661.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9515]
 gi|123199946|gb|ABM71554.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9515]
          Length = 363

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS K ++
Sbjct: 259 YGAFIDIGGV-SGLLHISEISHEHIETPHNVLNVTDQMKVMIIDLDSERGRISLSTKALE 317

Query: 692 QNTG 695
              G
Sbjct: 318 PEPG 321


>gi|281420270|ref|ZP_06251269.1| ribosomal protein S1 [Prevotella copri DSM 18205]
 gi|281405765|gb|EFB36445.1| ribosomal protein S1 [Prevotella copri DSM 18205]
          Length = 594

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+E  R   + I    E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   
Sbjct: 198 ELEQQR---KEIIGKLEKGQILEGTVKNITTYGVFVDLGGV-DGLIHITDLSWGRVSDPH 253

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           +VV     + V +LDFD+  K I L +K
Sbjct: 254 EVVSLDQKINVVILDFDEEKKRIALGLK 281



 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +K GD V   +L   DR +
Sbjct: 302 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTL-DRAE 360

Query: 683 IKLSMKV 689
            K+S+ +
Sbjct: 361 RKMSLGI 367


>gi|20807800|ref|NP_622971.1| ribosomal protein S1 [Thermoanaerobacter tengcongensis MB4]
 gi|20516357|gb|AAM24575.1| Ribosomal protein S1 [Thermoanaerobacter tengcongensis MB4]
          Length = 367

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           + +G+V +++  GAFV+  G  DG + IS+L   R+    +V+K G  V   +L  D + 
Sbjct: 193 VIEGKVSRIIPKGAFVN-LGGMDGFIPISELGHGRIKSPEEVIKPGHKVSAYVLKVDKKE 251

Query: 681 GKIKLSMKVVDQN 693
           GKI LS+K +  N
Sbjct: 252 GKITLSLKKLLPN 264


>gi|329901883|ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
 gi|327548975|gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 27/206 (13%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R  GR ++ +R +       +   GS L   GDT+ I   ++    +++    L G  
Sbjct: 4   QLRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASI----EDKVPGFLKGKG 59

Query: 371 RNDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +      Y  LP +T   +RM      G  S R     RL  R++      +A    TL 
Sbjct: 60  QGWMTAEYGMLPRSTH--TRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLH 117

Query: 425 IVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +A       L+D GV    P+   VA I++G+ +     
Sbjct: 118 LDCDVIQADGGTRTASITGAMVAAHDAFSKLVDTGVLSAMPLKHFVAAISVGVFQG---- 173

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             + D+  DED     D  V  TD+G
Sbjct: 174 TPVLDLDYDEDSTCDTDMNVVMTDAG 199


>gi|323487994|ref|ZP_08093249.1| general stress protein 13 (GSP13) [Planococcus donghaensis MPA1U2]
 gi|323398346|gb|EGA91137.1| general stress protein 13 (GSP13) [Planococcus donghaensis MPA1U2]
          Length = 124

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  +  +GAFV       GLVHIS+++   V + S+ ++ G  V VK+L+ D +  KI
Sbjct: 13  GKVTGIQPYGAFVALDDQTQGLVHISEITHGYVKEVSEYLEVGQEVDVKVLEVDTKSKKI 72

Query: 684 KLSMK------VVDQNTGKP 697
            LS++      V  Q T KP
Sbjct: 73  SLSIRALQEQPVAAQKTEKP 92


>gi|315046956|ref|XP_003172853.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
 gi|311343239|gb|EFR02442.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
          Length = 1821

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +I  G+V KV ++GAF+   G+ +  GL H S+++ +RV   + + ++ D V  K+L
Sbjct: 1332 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1391

Query: 676  DFD-DRGKIKLSMK 688
              D ++G+I L +K
Sbjct: 1392 KVDLEKGQIALGLK 1405


>gi|110638350|ref|YP_678559.1| 30S ribosomal protein S1 [Cytophaga hutchinsonii ATCC 33406]
 gi|110281031|gb|ABG59217.1| SSU ribosomal protein S1P [Cytophaga hutchinsonii ATCC 33406]
          Length = 606

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +N + KGQV++     + +FG F+   G  DGL+HI+ +S  R++   +V+     V V 
Sbjct: 215 LNNLEKGQVLEGVIKNMTNFGVFIDLGGV-DGLLHITDISWGRISHPQEVLSLDQKVQVV 273

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFD+  K I L MK
Sbjct: 274 VLDFDEEKKRISLGMK 289



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG++V V D+GAF+      +GL+H+S++S ++ +    D +K GD +   +L  D D  
Sbjct: 310 KGKIVNVADYGAFLELHPGVEGLIHVSEMSWSQHLRNPQDFIKVGDELETVVLTLDRDER 369

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 370 KMSLGIK 376



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + +FG F+      DGLVH+S LS T+++   S+ VK GD + V +L+ D + 
Sbjct: 398 HTGLVRNLTNFGLFIELEEGIDGLVHVSDLSWTKKIKHPSEFVKVGDKLDVVVLELDVEN 457

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K +++N
Sbjct: 458 RRLALGHKQLEEN 470


>gi|330752286|emb|CBL87241.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
          Length = 740

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R+   S+V++    + V +LDF
Sbjct: 243 EKGQVLEGTVKNLTDFGAFMDLGGV-DGLLYITDISWGRINHPSEVLELNQNLNVVVLDF 301

Query: 678 DDRGK-IKLSMK 688
           D+  K I L +K
Sbjct: 302 DENKKRISLGLK 313



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  +  +G FV       G+VHIS LS T+R +  S+  K G+T+ V +L+ D D 
Sbjct: 420 HSGEVKNLTPYGVFVELKEGIGGMVHISDLSWTKRYSHPSEFTKVGETIDVTILEVDQDS 479

Query: 681 GKIKLSMKVVDQN 693
            K+ L  K +++N
Sbjct: 480 RKLSLGHKQLEEN 492


>gi|195436234|ref|XP_002066074.1| GK22168 [Drosophila willistoni]
 gi|194162159|gb|EDW77060.1| GK22168 [Drosophila willistoni]
          Length = 1236

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 644 DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +GLVHISQL  E RV   ++VV    TV VK++    + K+ LSMK VDQ +G+
Sbjct: 304 EGLVHISQLRAEGRVTDVTEVVSRNQTVKVKVMSITGQ-KVSLSMKEVDQESGR 356


>gi|325279173|ref|YP_004251715.1| RNA binding S1 domain-containing protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324310982|gb|ADY31535.1| RNA binding S1 domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 621

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQV++     +  +G F+   G  DGL+HI+ LS  RV   +++V     + V 
Sbjct: 227 ISKLEKGQVLEGTVKNITSYGVFIDLGGV-DGLIHITDLSWGRVNHPNEIVTLDQKLNVV 285

Query: 674 LLDFDDRGK-IKLSMK 688
           +LDFDD  K I L +K
Sbjct: 286 ILDFDDEKKRIALGLK 301



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S ++ +    D +K GD V   +L  D D  
Sbjct: 322 KGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDRDER 381

Query: 682 KIKLSMK 688
           K+ L +K
Sbjct: 382 KMSLGIK 388


>gi|326775294|ref|ZP_08234559.1| Tex-like protein [Streptomyces cf. griseus XylebKG-1]
 gi|326655627|gb|EGE40473.1| Tex-like protein [Streptomyces cf. griseus XylebKG-1]
          Length = 828

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  + D+ E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK 
Sbjct: 661 KEGVEKLGDL-EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKP 719

Query: 667 GD 668
           GD
Sbjct: 720 GD 721


>gi|285017590|ref|YP_003375301.1| ribonuclease ph protein [Xanthomonas albilineans GPE PC73]
 gi|283472808|emb|CBA15313.1| hypothetical ribonuclease ph protein [Xanthomonas albilineans]
          Length = 241

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR +E +R +  +    +   GS L   GDT+ +   ++    D +    L G    
Sbjct: 5   RPSGRTAEQLRPVRIERAFTRHAEGSVLVSFGDTRVLCNASV----DNRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHSRSEREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL+DA
Sbjct: 121 VLQADGGTRTAAITGAYVALVDA 143


>gi|134046725|ref|YP_001098210.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis C5]
 gi|132664350|gb|ABO35996.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanococcus maripaludis C5]
          Length = 265

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            D PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V 
Sbjct: 3   NDFPEEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVV 62

Query: 672 VKLLDFD-DRGKIKLSMK 688
            K++     + +I LS+K
Sbjct: 63  AKVMRVTPHKNQIDLSLK 80


>gi|302669602|ref|YP_003829562.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394075|gb|ADL32980.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EMI ++    EV  + +G V  + ++GAFV+      GLVHISQ+  +R+A  S V+K G
Sbjct: 191 EMISNV----EVGLVTEGVVESLQNYGAFVNLGNGMTGLVHISQICNQRIAHPSSVLKVG 246

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQ 692
             V VK+    D GK+ LSMK +++
Sbjct: 247 QKVKVKVTAIKD-GKLSLSMKALEE 270


>gi|154246109|ref|YP_001417067.1| RNA-binding S1 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154160194|gb|ABS67410.1| RNA binding S1 domain protein [Xanthobacter autotrophicus Py2]
          Length = 780

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%)

Query: 539 LSESRLQLGEFTPRVEIMAIPP---DQIRNVIGMGGKVIRGIVEQTGA------KVNIDD 589
           LS   L++ E T  ++  A+ P   D  + ++   G+ +R ++  T A      +  +D+
Sbjct: 555 LSAGFLRIAEGTEPLDASAVHPEAYDLAKKIVAACGRDVRALMGDTAALKALDPRAFVDE 614

Query: 590 DGTVKIASSSLAEIEAA----REMIRSITDVPEVNK--------IYKGQVVKVMDFGAFV 637
              +      L+E+E      R   ++ T    VN+        + +G V  V  FGAFV
Sbjct: 615 RFGLPTVRDILSELEKPGRDPRPQFKTATFAEGVNEMSDLKPGMVLEGTVTNVAAFGAFV 674

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                +DGLVH+S L+   V    +VVK G
Sbjct: 675 DIGVHQDGLVHVSALADRFVKDPHEVVKAG 704


>gi|326516488|dbj|BAJ92399.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 426

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + KG V K+  +GA +   G  R GL+HIS +S  RV   SD++K  D + V ++  +  
Sbjct: 282 LLKGNVHKIFPYGAQIRITGTNRSGLLHISNISQGRVLSVSDILKVDDELKVLVIKSNVS 341

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS+  ++   G
Sbjct: 342 DKIALSIADLESAPG 356


>gi|326481772|gb|EGE05782.1| rRNA biogenesis protein RRP5 [Trichophyton equinum CBS 127.97]
          Length = 1738

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +I  G+V KV ++GAF+   G+ +  GL H S+++ +RV   + + ++ D V  K+L
Sbjct: 1248 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1307

Query: 676  DFD-DRGKIKLSMK 688
              D ++G+I L +K
Sbjct: 1308 KVDLEKGQIALGLK 1321


>gi|148238851|ref|YP_001224238.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
 gi|147847390|emb|CAK22941.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
          Length = 367

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS K ++
Sbjct: 265 YGAFIDIGGV-SGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALE 323

Query: 692 QNTG 695
              G
Sbjct: 324 PEPG 327


>gi|330508866|ref|YP_004385294.1| DNA-directed RNA polymerase [Methanosaeta concilii GP-6]
 gi|328929674|gb|AEB69476.1| DNA-directed RNA polymerase [Methanosaeta concilii GP-6]
          Length = 194

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           PE+ +I +G+VV+++ FGAF+   G  DGL+H+SQ++ E ++
Sbjct: 79  PEMQEIIEGEVVEIVKFGAFLSL-GPFDGLLHVSQITNEYIS 119


>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
          Length = 329

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 25/219 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT----LGTREDEQYVDSLSG 368
           R D R S  +R I ++  LL +  GS+ F +G +  +  V     + T   E+   S+  
Sbjct: 85  RDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSV-- 142

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                  +  +F P ATG  +       RE+    L R A+  ++         + ++ +
Sbjct: 143 -------VDVSFTP-ATGNTTYFD--KEREM----LVRNAVESIILTLLHPRTQINVIVQ 188

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           +  +DGS     +    LAL+DAG+ ++  ++ I +    D    I L     +E++   
Sbjct: 189 VYSNDGSIISCAINACCLALLDAGIELNCLISSITLSFTHDNQ--IYLDPTQKEENNSKG 246

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           +      + S I    M    G I E++    L  AK+ 
Sbjct: 247 LAVYAINSKSEIV---MTKTTGIIGESLYFQGLNIAKQS 282


>gi|322383243|ref|ZP_08057054.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152512|gb|EFX45298.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 251

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +       +   GS L   GDT+ I   T+    +E+    L    +
Sbjct: 1   MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATI----EERVPPFLKNEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT +V      S+ ++G       RL  RA+  V+   A    ++ + 
Sbjct: 57  GWVTAEYSMLPRAT-QVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLD 115

Query: 427 SEITESDGSSSMATVCGSSLALM--------DAGV---PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +   ++ G+ +A+         D  +   PI+  +A +++G+V+ G+  + 
Sbjct: 116 CDVIQADGGTRTTSITGAFIAMSLAIHKLMEDKKITVNPITDYLASVSVGIVQ-GETLL- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED   H+D  V  T  G
Sbjct: 174 --DLMYTEDSQAHVDMNVVMTGRG 195


>gi|332521413|ref|ZP_08397867.1| RNA binding S1 domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042812|gb|EGI79011.1| RNA binding S1 domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 630

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 595 IASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  S  A IEA   E  + I    E  ++ +G V  +  +G F+   G  DGLVHI+ LS
Sbjct: 233 VVVSHKALIEADIEEQKKEIIGQLEKGQVLEGVVKNITSYGVFIDLGGV-DGLVHITDLS 291

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             R+   +++V+    + V +LDFD ++ +I+L +K
Sbjct: 292 WSRINHPNEIVELDQKLNVVILDFDENKSRIQLGLK 327



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD--DR 680
           KG+VV + D+GAF+      +GLVH+S++S +  +   +D V  GD +  ++L  D  DR
Sbjct: 348 KGKVVVIADYGAFIEVAEGVEGLVHVSEMSWSTHLRSANDFVNVGDEIEAQILTLDREDR 407

Query: 681 GKIKLSMKVVDQN 693
            K+ L +K + Q+
Sbjct: 408 -KMSLGIKQLSQD 419


>gi|158317399|ref|YP_001509907.1| ribonuclease PH [Frankia sp. EAN1pec]
 gi|226736910|sp|A8L766|RNPH_FRASN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158112804|gb|ABW15001.1| ribonuclease PH [Frankia sp. EAN1pec]
          Length = 260

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +RD++ + G  +   GS+L   G T+ +   ++     E       G+  
Sbjct: 2   IRVDGRTTDQLRDVTIERGWQEHAEGSALISAGRTRVLCAASV----TEGVPRWRKGSGL 57

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y+ LP AT   +       R+G  +  EI   RL  R++   +   A    T+ 
Sbjct: 58  GWVTAEYSMLPRATHTRNDRESVRGRIGGRT-HEI--SRLIGRSLRAAIDLKALGENTIA 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           I  ++  +DG +  A + G+ +AL DA   + +P A
Sbjct: 115 IDCDVLLADGGTRTAAITGAYVALADACRWLGRPAA 150


>gi|327305835|ref|XP_003237609.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
 gi|326460607|gb|EGD86060.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
          Length = 1823

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +I  G+V KV ++GAF+   G+ +  GL H S+++ +RV   + + ++ D V  K+L
Sbjct: 1332 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1391

Query: 676  DFD-DRGKIKLSMK 688
              D ++G+I L +K
Sbjct: 1392 KVDLEKGQIALGLK 1405


>gi|167619837|ref|ZP_02388468.1| transcription accessory protein, TEX [Burkholderia thailandensis
           Bt4]
          Length = 751

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G       L     R +I L+M++ D     P
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDDDAAPSP 734


>gi|326471469|gb|EGD95478.1| rRNA biogenesis protein RRP5 [Trichophyton tonsurans CBS 112818]
          Length = 1827

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +I  G+V KV ++GAF+   G+ +  GL H S+++ +RV   + + ++ D V  K+L
Sbjct: 1337 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1396

Query: 676  DFD-DRGKIKLSMK 688
              D ++G+I L +K
Sbjct: 1397 KVDLEKGQIALGLK 1410


>gi|302667984|ref|XP_003025570.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
 gi|291189685|gb|EFE44959.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
          Length = 1799

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +I  G+V KV ++GAF+   G+ +  GL H S+++ +RV   + + ++ D V  K+L
Sbjct: 1310 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1369

Query: 676  DFD-DRGKIKLSMK 688
              D ++G+I L +K
Sbjct: 1370 KVDLEKGQIALGLK 1383


>gi|161833643|ref|YP_001597839.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri GWSS]
 gi|152206132|gb|ABS30442.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri GWSS]
          Length = 614

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQV++     +  +G+F+   G  DGL HI+ +S ER+   S+ ++ G T+   
Sbjct: 230 ISKLEKGQVLRGIVKNITHYGSFIDIGGGIDGLCHITDISWERIEHPSEKLEIGQTINFV 289

Query: 674 LLDFDD-RGKIKLSMKVVDQN 693
           +L  D  + +++L +K +  N
Sbjct: 290 ILSIDKIKNRVQLGLKQLQSN 310



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 632 DFGAFVHFCGARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           D+GAFV      +GLVH+S++S   T+++  +   VK GD + V +L++D    K+ LS+
Sbjct: 334 DYGAFVEIFPGVEGLVHVSEMSWSKTKKLRSSQSFVKIGDKIKVLILNYDISDQKMSLSL 393

Query: 688 K 688
           K
Sbjct: 394 K 394


>gi|291533802|emb|CBL06915.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Megamonas hypermegale ART12/1]
          Length = 153

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  +  FGAFV   G + GLVHIS+++   V   +D +KE D V VK+L  
Sbjct: 4   EVGNILEGVVTGITKFGAFVELPGGKVGLVHISEVADVYVKDVNDFLKEKDKVKVKVLSV 63

Query: 678 DDRGKIKLSM------KVVDQNT 694
           DD GKI LS+      KV +QNT
Sbjct: 64  DDHGKIGLSIKQLQEKKVEEQNT 86


>gi|260219479|emb|CBA26324.1| hypothetical protein Csp_E34120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 127

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I +G V  V  FGAF+     +DGLVH+SQL+ + V    +VVK GD V V++++ D  R
Sbjct: 6   ILEGTVSNVAQFGAFIDLGVHQDGLVHVSQLAHKFVNDAREVVKTGDIVKVQVVEVDVAR 65

Query: 681 GKIKLSMKV 689
            +I L+MK+
Sbjct: 66  KRIGLTMKI 74


>gi|255535041|ref|YP_003095412.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341237|gb|ACU07350.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteriaceae bacterium 3519-10]
          Length = 707

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++SI D+ +   I  G V  +  FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 628 VKSIKDL-KTGMILPGIVNNITAFGCFVDLGIKESGLVHISQLKEGFVSDVNEVVKLHQH 686

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V V++ + D+ R +++LSM
Sbjct: 687 VQVRVTEVDEARKRVQLSM 705


>gi|255522701|ref|ZP_05389938.1| ribonuclease PH [Listeria monocytogenes FSL J1-175]
          Length = 229

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 22/183 (12%)

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG----E 387
           L    GS L   G+T+ I   ++ T+        + G  R      Y+ LP AT      
Sbjct: 2   LMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGRGWISAEYSMLPRATNTRNIR 57

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
            S  G  + R +   RL  RA+  V+   A    T+ +  ++ ++DG +  A++ G+ +A
Sbjct: 58  ESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIA 117

Query: 448 L------MDAGVPISK-PV----AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
           +      +D  VP +K PV    A  ++G++++G   +   D++  ED    +D  +  T
Sbjct: 118 MVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVL---DLNYVEDSAAQVDMNIIMT 174

Query: 497 DSG 499
            SG
Sbjct: 175 GSG 177


>gi|83720619|ref|YP_442769.1| transcription accessory protein, TEX [Burkholderia thailandensis
           E264]
 gi|257138979|ref|ZP_05587241.1| transcription accessory protein, TEX [Burkholderia thailandensis
           E264]
 gi|83654444|gb|ABC38507.1| transcription accessory protein, TEX [Burkholderia thailandensis
           E264]
          Length = 775

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G       L     R +I L+M++ D     P
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDDDAAPSP 734


>gi|255262103|ref|ZP_05341445.1| ribosomal protein S1 [Thalassiobium sp. R2A62]
 gi|255104438|gb|EET47112.1| ribosomal protein S1 [Thalassiobium sp. R2A62]
          Length = 553

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 7/79 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVK 673
           PE  ++ +G+V  + +FG FV   G  DG+VH+S L+ E   +  DV+   ++GD V  K
Sbjct: 361 PEGTEV-EGEVKNITEFGLFVGLDGDIDGMVHLSDLTWE--GRGEDVIGDYRKGDMVNAK 417

Query: 674 LLDFD-DRGKIKLSMKVVD 691
           + + D ++ +I LS+K +D
Sbjct: 418 VTEVDVEKERISLSIKAMD 436



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 8/95 (8%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S AE  A  E+I ++T+  +V+ + K     + ++GAFV   G  DGL+H++ ++ 
Sbjct: 172 ILEESRAEQRA--EVIGNLTEGQQVDGVVK----NITEYGAFVDLGGV-DGLLHVTDMAW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            RV   S++V  G+T+ V+++  + +  +I L MK
Sbjct: 225 RRVNHPSEIVTIGETIQVQVIKINKETHRISLGMK 259



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  +
Sbjct: 279 HTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAK 338

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K   +N
Sbjct: 339 RRVSLGLKQTQRN 351


>gi|19705086|ref|NP_602581.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|50401078|sp|Q8RI52|ISPH_FUSNN RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase
 gi|19713008|gb|AAL93880.1| LytB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 827

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDRG 681
           G V KV+ +GAFV      +GLVHIS  S T++    +D VKE + + V++ D   +DR 
Sbjct: 567 GIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKEREKIKVRITDLHPEDR- 625

Query: 682 KIKLSMK 688
           K+KL +K
Sbjct: 626 KLKLGIK 632



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V +V+DFG  V     + G +HIS++S +R+ K SD  K GD +   ++  D+ +  +KL
Sbjct: 484 VTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKL 542

Query: 686 SMKVVDQN 693
           S+K ++++
Sbjct: 543 SIKKLEED 550


>gi|320120527|gb|ADW16175.1| hypothetical protein HMPREF0389_01731 [Filifactor alocis ATCC
           35896]
          Length = 394

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V+ I +  V  + ++G FV      DG +HIS LS+  V   ++VV +GD +  +++  +
Sbjct: 273 VDDIIECTVKNIKEYGVFVKLNETVDGFIHISNLSSSYVKNPNEVVSQGDVITARIISIN 332

Query: 679 DRG-KIKLSMKV 689
           +   K++L+M +
Sbjct: 333 EETQKVELTMNL 344


>gi|298244158|ref|ZP_06967964.1| Tex-like protein [Ktedonobacter racemifer DSM 44963]
 gi|297551639|gb|EFH85504.1| Tex-like protein [Ktedonobacter racemifer DSM 44963]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V+DFGAFV     +DGLVHIS+L+   V     VV  G  V V++L  D  R
Sbjct: 702 ILQGTVRNVVDFGAFVDIGVKQDGLVHISELAERFVKDPLTVVAVGQVVSVRVLSIDLKR 761

Query: 681 GKIKLSMKVVDQ 692
            +++LSM+   Q
Sbjct: 762 NRVQLSMRNAKQ 773


>gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R +S   G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y+ LP AT           R+G  +  EI   RL  R++  V+   A    T+ +
Sbjct: 59  WVTAEYSMLPRATNTRGDRESVRGRIGGRT-HEI--SRLIGRSLRAVIDYKALGENTIVL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V     
Sbjct: 116 DCDVLQADGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAP- 174

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
              L D+  +ED     D  V  T  G
Sbjct: 175 ---LLDLCYEEDVRADTDMNVVCTGDG 198


>gi|289582158|ref|YP_003480624.1| translation initiation factor 2, subunit alpha [Natrialba magadii
           ATCC 43099]
 gi|289531711|gb|ADD06062.1| translation initiation factor 2, alpha subunit [Natrialba magadii
           ATCC 43099]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G++ ++ DFG FV      D  GL+HIS++++  +    D V+EG     K+
Sbjct: 7   PDPGELVVGKIDEIEDFGVFVDLEEYEDKRGLIHISEVASGWIKNVRDHVREGQIAVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           LD D +  +I LS+K V+ +
Sbjct: 67  LDVDKESQQIDLSLKDVNDH 86


>gi|146279884|ref|YP_001170042.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides ATCC 17025]
 gi|145558125|gb|ABP72737.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides ATCC 17025]
          Length = 561

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++ +Y+GQ V      + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+
Sbjct: 191 ISNLYEGQTVDGVVKNITEYGAFVDLGGV-DGLLHVTDMAWRRVNHPSEILSIGETVKVQ 249

Query: 674 LLDFD-DRGKIKLSMK 688
           ++  + +  +I L MK
Sbjct: 250 VIKINKETHRISLGMK 265



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 IGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DSAKRRVSLGLKQTMRN 357


>gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101]
 gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR S  +R IS ++   +    S L   G+T+ +  VT+     +   D+  G    
Sbjct: 5   RPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGW--- 61

Query: 373 DFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E  +      S R     RL  R++   L        T+ + +++ 
Sbjct: 62  -LTAEYRMLPAATSERQQREFMKLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVL 120

Query: 431 ESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +A       L+D G     PI   VA +++GL+ + + ++   D+
Sbjct: 121 QADAGTRTVSITGGFVAVANAISKLIDQGKLERSPILHQVAAVSVGLL-EKEPYL---DL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D   +  +Q   +IG  S   +   L  A+ G   + +   +V
Sbjct: 177 NYPEDVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQV 236

Query: 539 LS 540
           +S
Sbjct: 237 IS 238


>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
 gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 23/185 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +S    +L R HGS+ + +GDT+    V  G +         +GT++N
Sbjct: 5   RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAV-YGPK---------AGTKKN 54

Query: 373 D----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           +      +   + P  TG++ ++     RE  +  + +R +  +   T     T  I+ +
Sbjct: 55  ENPEKACVEVIWKP-KTGQIGKL----ERE--YEMILKRTLQSICILTLNPNTTTSIIVQ 107

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
               DG+  +  +  +  AL+DA +P+      I   L   G  ++IL     +E  +  
Sbjct: 108 FVNDDGALLVCAINAACAALVDARIPMKHLAVAICCCLADVG--YVILDPTKLEEQKMKG 165

Query: 489 MDFKV 493
             + V
Sbjct: 166 FAYLV 170


>gi|145251307|ref|XP_001397167.1| rRNA biogenesis protein RRP5 [Aspergillus niger CBS 513.88]
 gi|134082698|emb|CAK42591.1| unnamed protein product [Aspergillus niger]
          Length = 1822

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            ++  G+V KV +FGAF+   G+++  GL H S+++  RV     + +EGD V  K+L  D
Sbjct: 1329 QVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKID 1388

Query: 679  DRG-KIKLSMK 688
             +  KI   +K
Sbjct: 1389 RKQEKISFGLK 1399


>gi|229553841|ref|ZP_04442566.1| RNA binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|258507807|ref|YP_003170558.1| General stress protein 13 [Lactobacillus rhamnosus GG]
 gi|229312811|gb|EEN78784.1| RNA binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|257147734|emb|CAR86707.1| General stress protein 13 [Lactobacillus rhamnosus GG]
          Length = 127

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G+V  V  +GAFV       GLVHIS+     V  TSD+   G  V V +LD D
Sbjct: 5   IGDILTGKVTGVQPYGAFVMLDEHTQGLVHISECQHGYVKDTSDIFNVGQRVEVVILDID 64

Query: 679 DRG-KIKLSMKVV 690
           +   KI LS++ +
Sbjct: 65  EYTQKISLSLRAL 77


>gi|332284454|ref|YP_004416365.1| ribonuclease PH [Pusillimonas sp. T7-7]
 gi|330428407|gb|AEC19741.1| ribonuclease PH [Pusillimonas sp. T7-7]
          Length = 271

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 19/171 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+ GR +  +R +  + G  +   GS L   GDT  +   ++     E+    L G  +
Sbjct: 35  TRLSGRAASELRPVVIETGYTRHAEGSVLIKAGDTHVLCNASV----LEKVPPFLKGKSQ 90

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++  V   TA    T+++  
Sbjct: 91  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDC 150

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLV 467
           ++ ++DG +  A++ G+ +A       L++ GV    P+   VA +++GLV
Sbjct: 151 DVLQADGGTRCASITGAWVAAALAVRGLVEQGVLAQSPLLDQVAAVSVGLV 201


>gi|258541164|ref|YP_003186597.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256632242|dbj|BAH98217.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256635299|dbj|BAI01268.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-03]
 gi|256638354|dbj|BAI04316.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-07]
 gi|256641408|dbj|BAI07363.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-22]
 gi|256644463|dbj|BAI10411.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-26]
 gi|256647518|dbj|BAI13459.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-32]
 gi|256650571|dbj|BAI16505.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653562|dbj|BAI19489.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-12]
          Length = 572

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+I+ +T+      I  G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ 
Sbjct: 192 EQRSELIQGLTE----GMILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWKRINHPSEA 246

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ G  V V+++ F+ +  +I L MK
Sbjct: 247 LQIGQPVRVQVIRFNPETQRISLGMK 272



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 292 FTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSAK 351

Query: 681 GKIKLSMKVVDQN 693
            +I L +K V +N
Sbjct: 352 RRISLGLKQVQRN 364


>gi|167465849|ref|ZP_02330938.1| hypothetical protein Plarl_25333 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           FGAFV       GLVHIS+++   V   ++ +K  D V VK+++ D  GKI LS+K   Q
Sbjct: 3   FGAFVELEEGVTGLVHISEIAHNYVKDVNEHLKIDDKVLVKVINVDKDGKIGLSIK---Q 59

Query: 693 NTGKP 697
              KP
Sbjct: 60  TKEKP 64


>gi|148259766|ref|YP_001233893.1| 30S ribosomal protein S1 [Acidiphilium cryptum JF-5]
 gi|326403266|ref|YP_004283347.1| 30S ribosomal protein S1 [Acidiphilium multivorum AIU301]
 gi|146401447|gb|ABQ29974.1| SSU ribosomal protein S1P [Acidiphilium cryptum JF-5]
 gi|325050127|dbj|BAJ80465.1| 30S ribosomal protein S1 [Acidiphilium multivorum AIU301]
          Length = 575

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++S T++ A    +V     V V +LD D  + +
Sbjct: 295 GRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNAHPGKIVATSQEVEVMVLDVDAGKRR 354

Query: 683 IKLSMKVVDQN 693
           I L +K V +N
Sbjct: 355 ISLGLKQVQRN 365



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+I+ + +     +I  G V  + D+GAFV   G  DGL+H++ ++  R+   ++ 
Sbjct: 193 EQRSELIQGLKE----GQILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWRRINHPAEA 247

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G  V V+++ F+ D  +I L MK
Sbjct: 248 LTIGQPVRVQVIRFNPDTQRISLGMK 273



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           SL   +  R       D   V  I +G++  + +FG F+      DG+VH+S LS +   
Sbjct: 356 SLGLKQVQRNPWEQFLDEHPVGSIVEGEIRNITEFGLFIGLAPDIDGMVHMSDLSWDEPG 415

Query: 659 KTSDV-VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + +     +G+ V  K+LD D ++ +I L +K ++++
Sbjct: 416 ELAMAKFNKGEMVKAKVLDVDVEKERISLGVKQLEED 452


>gi|226506016|ref|NP_001141809.1| hypothetical protein LOC100273947 [Zea mays]
 gi|194706008|gb|ACF87088.1| unknown [Zea mays]
          Length = 153

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G+V +V D G FV   G R GLVH+SQ+   R A  +  + +   V  K++   D  K+ 
Sbjct: 50  GRVTRVGDVGCFVCLDGGRKGLVHVSQMLGRRRAGATFTLGQ---VSFKVV-LVDGAKLG 105

Query: 685 LSMKVVDQNTGK 696
           LSM  VDQ+ GK
Sbjct: 106 LSMVDVDQDIGK 117


>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
          Length = 138

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 419 FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +P++ + I  E+ ++DGS+    V  ++LAL+DAG+P+ + +   +  L   G+  + L 
Sbjct: 3   YPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGIPLKEYIIACSASL---GNGDVPLI 59

Query: 478 DISGDEDHLGHMDFKVAGTD-SG-ITAMQMDMK 508
           D+S  E+ LG  +  +A    SG IT ++M  K
Sbjct: 60  DVSHLEESLGGSNLTIAALPLSGQITVLEMSQK 92


>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
 gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
 gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 23/196 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   +          DS  G    
Sbjct: 11  RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGW--- 67

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  R++   +  +     T+ I  +
Sbjct: 68  -LTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCD 126

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  PVA +++G++    D  +  
Sbjct: 127 VLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVI----DGAVCL 182

Query: 478 DISGDEDHLGHMDFKV 493
           D+  +ED    +D  V
Sbjct: 183 DLPYEEDSRADVDMNV 198


>gi|296314065|ref|ZP_06864006.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
 gi|296839317|gb|EFH23255.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
          Length = 241

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 15/194 (7%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALMDA-------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +AL  A       G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILTENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG 499
               D  +  T SG
Sbjct: 185 GCDSDVNIVMTASG 198


>gi|218260365|ref|ZP_03475721.1| hypothetical protein PRABACTJOHN_01384 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224556|gb|EEC97206.1| hypothetical protein PRABACTJOHN_01384 [Parabacteroides johnsonii
           DSM 18315]
          Length = 708

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++I D+ E  +I  G V  + +FG FV      +GLVHIS+L+   V+  + VV     
Sbjct: 628 VKTIEDLKE-GQILPGIVTNITNFGCFVDVGIKENGLVHISELADRFVSDPTQVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V VK++  D  R ++ LSMK
Sbjct: 687 VKVKVVSVDLVRKRVGLSMK 706


>gi|154147885|ref|YP_001406069.1| 30S ribosomal protein S1 [Campylobacter hominis ATCC BAA-381]
 gi|153803894|gb|ABS50901.1| 30S ribosomal protein S1 [Campylobacter hominis ATCC BAA-381]
          Length = 557

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E +  +E+I  +  +   +++ +G V K+  +G FV   G  DGLVH S++S +     +
Sbjct: 186 ERKVKKEVISKL--LENTDQVIEGIVKKITTYGMFVD-VGGVDGLVHYSEISYKGPVNPN 242

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
            + KEGD V VK++++D+  + + LS+K
Sbjct: 243 SLYKEGDKVPVKVINYDNEKRHLSLSIK 270



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G +  + +FGAFV      +GL+H    S +R  +  D+ K GD V VK++  
Sbjct: 372 KVGDIAEGTITTITNFGAFVKIENV-EGLLHNEDASWDRNVRCKDLFKIGDNVKVKIIKI 430

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KI L+ K +++
Sbjct: 431 DEENQKISLNHKDLEE 446


>gi|107022076|ref|YP_620403.1| ribonuclease PH [Burkholderia cenocepacia AU 1054]
 gi|116689020|ref|YP_834643.1| ribonuclease PH [Burkholderia cenocepacia HI2424]
 gi|170732309|ref|YP_001764256.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
 gi|254246044|ref|ZP_04939365.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|123245179|sp|Q1BY75|RNPH_BURCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228269|sp|A0K5H3|RNPH_BURCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736892|sp|B1JXM2|RNPH_BURCC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|105892265|gb|ABF75430.1| RNAse PH [Burkholderia cenocepacia AU 1054]
 gi|116647109|gb|ABK07750.1| RNAse PH [Burkholderia cenocepacia HI2424]
 gi|124870820|gb|EAY62536.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|169815551|gb|ACA90134.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
          Length = 246

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 32/234 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ +   ++  R  E   +   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD--DFII 475
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+ +     D   
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLIAAGKLARSPITDHVAAISVGVYEGAPVLDLDY 182

Query: 476 LSDISGDED----HLGHMDF-KVAGTDSGITAMQ------MDMKIGGISENIMV 518
             D   D D      G   F +V GT  G+   +      +D+  GGI+E + +
Sbjct: 183 AEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQL 236


>gi|327399484|ref|YP_004340353.1| RNA-binding S1 domain-containing protein [Hippea maritima DSM
           10411]
 gi|327182113|gb|AEA34294.1| RNA binding S1 domain protein [Hippea maritima DSM 10411]
          Length = 517

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 15/117 (12%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMI-----------RSITDVPEVNKIYKGQVVKVMDF 633
           VN+DD+  VKI    + E E  +++            ++I +   V  + KG++V ++D+
Sbjct: 238 VNLDDEVEVKIIK--IEENEGKKKIYLGMKQLSEDPWKNIEEKFSVGNMVKGKIVNIVDY 295

Query: 634 GAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           G FV      +GLVH S++S ++   K  +  K GD V VK+ + D    ++ LS+K
Sbjct: 296 GLFVEIDKGIEGLVHKSEISYDKYPPKFEETYKIGDEVDVKITNIDKENRRMSLSIK 352


>gi|159905349|ref|YP_001549011.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis C6]
 gi|159886842|gb|ABX01779.1| translation initiation factor 2, alpha subunit [Methanococcus
           maripaludis C6]
          Length = 265

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  
Sbjct: 4   DFPEEGDIVIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVA 63

Query: 673 KLLDFD-DRGKIKLSMK 688
           K++     + +I LS+K
Sbjct: 64  KVMRVTPHKNQIDLSLK 80


>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
          Length = 268

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 60  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 113

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 114 RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 166

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+A  L  D D  ++L   S  E
Sbjct: 167 LNAACMALVDAGVPMRALFCGVACAL--DSDGTLVLDPTSKQE 207


>gi|293977754|ref|YP_003543184.1| 30S ribosomal protein S1 [Candidatus Sulcia muelleri DMIN]
 gi|292667685|gb|ADE35320.1| Ribosomal protein S1 [Candidatus Sulcia muelleri DMIN]
          Length = 656

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 619 VNKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++K+ KGQV++     +  +G+F+   G  DGL HI+ +S ER+   S+ ++ G T+   
Sbjct: 219 ISKLEKGQVLRGIVKNITHYGSFIDIGGGIDGLCHITDISWERIEHPSEKLEIGQTINFV 278

Query: 674 LLDFDD-RGKIKLSMKVVDQN 693
           +L  D  + +++L +K +  N
Sbjct: 279 ILSIDKIKNRVQLGLKQLQSN 299



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 632 DFGAFVHFCGARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           D+GAFV      +GLVH+S++S   T+++  +   VK GD + V +L++D    K+ LS+
Sbjct: 323 DYGAFVEIFPGVEGLVHVSEMSWSKTKKLRSSQSFVKIGDKIKVLILNYDISDQKMSLSL 382

Query: 688 K 688
           K
Sbjct: 383 K 383


>gi|227891617|ref|ZP_04009422.1| RNA binding protein [Lactobacillus salivarius ATCC 11741]
 gi|227866533|gb|EEJ73954.1| RNA binding protein [Lactobacillus salivarius ATCC 11741]
          Length = 132

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G++  +  +GAFV       GL+HIS+     V    + +K G  V V ++D D
Sbjct: 5   IGMIIEGRITGIQPYGAFVSLDNRTQGLIHISECHHGYVDNIRNFLKVGQMVRVMIIDID 64

Query: 679 D-RGKIKLSMKVVDQ 692
           +  GKI LS++ +++
Sbjct: 65  EYTGKISLSIRCLEK 79


>gi|320547871|ref|ZP_08042154.1| RNA binding protein [Streptococcus equinus ATCC 9812]
 gi|320447411|gb|EFW88171.1| RNA binding protein [Streptococcus equinus ATCC 9812]
          Length = 118

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  +  +GAFV       GL+HIS++    +     ++K G+ V V+++DFD+   K+
Sbjct: 9   GTITGIKPYGAFVALDNGTTGLIHISEIKAGYIENIYQLLKVGEKVLVQVVDFDEFTQKV 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSLRTLEE 77


>gi|27375851|ref|NP_767380.1| 30S ribosomal protein S1 [Bradyrhizobium japonicum USDA 110]
 gi|27348989|dbj|BAC46005.1| 30S ribosomal protein S1 [Bradyrhizobium japonicum USDA 110]
          Length = 582

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 205 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 259

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 260 LSIGQTVKVKIIKINHETHRISLGMK 285



 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  +
Sbjct: 305 FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVK 364

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   +N
Sbjct: 365 RRISLGLKQTMRN 377


>gi|301300865|ref|ZP_07207038.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851529|gb|EFK79240.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 131

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G++  +  +GAFV       GL+HIS+     V    + +K G  V V ++D D
Sbjct: 5   IGMIIEGRITGIQPYGAFVSLDNRTQGLIHISECHHGYVDNIRNFLKVGQMVRVMIIDID 64

Query: 679 D-RGKIKLSMKVVDQ 692
           +  GKI LS++ +++
Sbjct: 65  EYTGKISLSIRCLEK 79


>gi|296447758|ref|ZP_06889673.1| ribosomal protein S1 [Methylosinus trichosporium OB3b]
 gi|296254735|gb|EFH01847.1| ribosomal protein S1 [Methylosinus trichosporium OB3b]
          Length = 577

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S+V+  G +V VK++  
Sbjct: 199 EEGQVIEGVVKNITDYGAFVDLGGI-DGLLHVTDVAWRRVNHPSEVLSIGQSVRVKIIKI 257

Query: 678 D-DRGKIKLSMK 688
           + +  +I L MK
Sbjct: 258 NHETHRISLGMK 269



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V++L+ D  +
Sbjct: 289 FHGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVATSQEVDVQVLEVDPVK 348

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 349 RRISLGLKQTLQN 361


>gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015]
 gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +RD+           GS L   G+T+ I   ++    +E+    L G  + 
Sbjct: 4   RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASV----EERVPPFLKGQGQG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TG  SRMG  + R    G      RL  R++   +   A     + + 
Sbjct: 60  WVTAEYGMLPRSTG--SRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLD 117

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL DA             P+   VA I++G + +G   + 
Sbjct: 118 CDVIQADGGTRTASITGAFVALTDAVNQLINDGKLSKSPLLGQVASISVG-IYEGTPVL- 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED     D  V   D+G
Sbjct: 176 --DLDYPEDSNAETDMNVVMNDAG 197


>gi|328545800|ref|YP_004305909.1| 30S ribosomal protein S1 [polymorphum gilvum SL003B-26A1]
 gi|326415540|gb|ADZ72603.1| 30S ribosomal protein S1 [Polymorphum gilvum SL003B-26A1]
          Length = 566

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+++S+    E  +  +G V  + D+GAFV   G  DGL+H++ ++  R+   S+V
Sbjct: 186 EQRSELVQSL----EEGQTVEGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRINHPSEV 240

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV V+++  + D  +I L MK
Sbjct: 241 LSIGQTVRVQIIRVNQDTHRISLGMK 266



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V +L+ D  +
Sbjct: 286 FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEVDPVK 345

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 346 RRISLGLKQTLQN 358



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V    +FG F+   G  DG+VH+S L   R   +  +  K+GD V   +LD D D+ 
Sbjct: 374 EGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKKGDVVKAVVLDVDVDKE 433

Query: 682 KIKLSMK 688
           +I L +K
Sbjct: 434 RISLGIK 440


>gi|312183607|gb|ADQ42373.1| translation initiation factor IF-2 subunit A [Methanosaeta
           harundinacea]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 627 VVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           V +V+DFGAFV    +   R GL+HIS++++  +    D V+EG  +  K+L+ D  R  
Sbjct: 5   VDQVVDFGAFVILDEYANKR-GLIHISEVASGWIKYIRDHVREGQKIVCKVLNVDPSRHH 63

Query: 683 IKLSMKVVDQN 693
           I LS+K V+++
Sbjct: 64  IDLSLKDVNEH 74


>gi|257871109|ref|ZP_05650762.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
 gi|257805273|gb|EEV34095.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
          Length = 126

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I  G V  +  +GAFV       GL+H+S++ +       DV++ G  V V+++D 
Sbjct: 4   QIGTIIDGTVTGIQPYGAFVSLDKETQGLIHVSEIQSGYTKNIHDVLQVGQEVRVQIIDI 63

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KI LS + ++Q
Sbjct: 64  DEYSQKISLSRRTLEQ 79


>gi|150402906|ref|YP_001330200.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis C7]
 gi|150033936|gb|ABR66049.1| translation initiation factor 2, alpha subunit [Methanococcus
           maripaludis C7]
          Length = 265

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  
Sbjct: 4   DFPEEGDIVIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVA 63

Query: 673 KLLDFD-DRGKIKLSMK 688
           K++     + +I LS+K
Sbjct: 64  KVMRVTPHKNQIDLSLK 80


>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336572|sp|O26778|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
 gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 271

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 297 DIQAKVVR---TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           DI  ++ R   T +++ K R+DGR     RDIS + G++ +  GSS    G+TQ  ++V 
Sbjct: 6   DIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQ--IIVG 63

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           +  +  E + D+    +    + +   LP A+      G P  R +   R+  R I 
Sbjct: 64  VKPQIGEPFPDT---PEMGVILTNSELLPMASPTFEP-GPPDERSVELSRVVDRCIR 116


>gi|329114774|ref|ZP_08243531.1| 30S ribosomal protein S1 [Acetobacter pomorum DM001]
 gi|326695905|gb|EGE47589.1| 30S ribosomal protein S1 [Acetobacter pomorum DM001]
          Length = 572

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+I+ +T+      I  G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ 
Sbjct: 192 EQRSELIQGLTE----GMILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWKRINHPSEA 246

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++ G  V V+++ F+ +  +I L MK
Sbjct: 247 LQIGQPVRVQVIRFNPETQRISLGMK 272



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD D  +
Sbjct: 292 FTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQEVDVMVLDVDSAK 351

Query: 681 GKIKLSMKVVDQN 693
            +I L +K V +N
Sbjct: 352 RRISLGLKQVQRN 364


>gi|307705996|ref|ZP_07642819.1| hypothetical protein SMSK564_0041 [Streptococcus mitis SK564]
 gi|307620415|gb|EFN99528.1| hypothetical protein SMSK564_0041 [Streptococcus mitis SK564]
          Length = 120

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D D+  GK
Sbjct: 8   KGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHEALKVDEEVLVQVVDLDEFTGK 67

Query: 683 IKLSMKVVDQ 692
             LS++ +++
Sbjct: 68  ASLSIRTLEE 77


>gi|90961417|ref|YP_535333.1| polyribonucleotide nucleotidyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90820611|gb|ABD99250.1| Polyribonucleotide nucleotidyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 136

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G++  +  +GAFV       GL+HIS+     V    + +K G  V V ++D D
Sbjct: 5   IGMIIEGRITGIQPYGAFVSLDNRTQGLIHISECHHGYVDNIRNFLKVGQMVRVMIIDID 64

Query: 679 D-RGKIKLSMKVVDQ 692
           +  GKI LS++ +++
Sbjct: 65  EYTGKISLSIRCLEK 79


>gi|83854723|ref|ZP_00948253.1| 30S ribosomal protein S1 [Sulfitobacter sp. NAS-14.1]
 gi|83941246|ref|ZP_00953708.1| 30S ribosomal protein S1 [Sulfitobacter sp. EE-36]
 gi|83842566|gb|EAP81733.1| 30S ribosomal protein S1 [Sulfitobacter sp. NAS-14.1]
 gi|83847066|gb|EAP84941.1| 30S ribosomal protein S1 [Sulfitobacter sp. EE-36]
          Length = 553

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S AE  A  E+I ++T+  EV+ + K     + ++GAFV   G  DGL+H++ ++ 
Sbjct: 172 ILEESRAEQRA--EVIGNLTEGQEVDGVVK----NITEYGAFVDLGGV-DGLLHVTDMAW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            RV   S+++  G+T+ V+++  + +  +I L MK + ++
Sbjct: 225 RRVNHPSEILSIGETIKVQVIKINKETHRISLGMKQLQED 264



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG FV   G  DG+VH+S LS  +R  +     ++GDTV   + 
Sbjct: 361 PEGTEV-EGEVKNITEFGLFVGLPGDIDGMVHLSDLSWDQRGEEAIQDYRKGDTVQAVVS 419

Query: 676 DFD-DRGKIKLSMKVV 690
           + D ++ +I LS+K V
Sbjct: 420 EVDVEKERISLSIKGV 435


>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
 gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
          Length = 283

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L++  R DGR     R +S  +G  ++  GS+L   GDT  +  V +   EDE Y D+ 
Sbjct: 22  LLERGSRNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKI--EEDEPYSDT- 78

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
               + + +++   LP A  E    G P    I   R+  R++ 
Sbjct: 79  --PNQGNLVVNAELLPLAY-ETFEPGPPDENAIELSRVVDRSLR 119



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVY--DRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL +  G  A+++DG+ L   G+T VLA V    D    D  +   L VN +       
Sbjct: 38  RPLSITLG-YAKKADGSALVKLGDTTVLAGVKIEEDEPYSDTPNQGNLVVNAE------- 89

Query: 72  KIPGGYLRRES-RPTENEILISRMIDRSIR 100
            +P  Y   E   P EN I +SR++DRS+R
Sbjct: 90  LLPLAYETFEPGPPDENAIELSRVVDRSLR 119


>gi|307128513|ref|YP_003880543.1| putative 30S ribosomal protein S1 [Candidatus Sulcia muelleri CARI]
 gi|306482975|gb|ADM89845.1| putative 30S ribosomal protein S1 [Candidatus Sulcia muelleri CARI]
          Length = 574

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDF-DD 679
           I KG V  + D+GAFV      +GLVH+S++S  +  +++   VK GD + V +L++ + 
Sbjct: 318 IVKGTVTVITDYGAFVEIFPGVEGLVHVSEMSWAQQLRSAQYFVKIGDKIKVLILNYSNS 377

Query: 680 RGKIKLSMK 688
             K+ LSMK
Sbjct: 378 EKKMSLSMK 386


>gi|317182308|dbj|BAJ60092.1| 30S ribosomal protein S1 [Helicobacter pylori F57]
          Length = 552

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+VV + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVVTLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSTK 440



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIK 268


>gi|288553636|ref|YP_003425571.1| ribonuclease PH [Bacillus pseudofirmus OF4]
 gi|288544796|gb|ADC48679.1| ribonuclease PH [Bacillus pseudofirmus OF4]
          Length = 251

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +      L+   GS L   GDT+ I   ++    +E+    + G  +
Sbjct: 1   MRSDGRQVNELRAVQLDTDYLKHPEGSVLISMGDTKVICTASI----EERVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  R++  +L        T+ I  
Sbjct: 57  GWITAEYSMLPRATEQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           ++ ++DG +  A++ G+ +AL    + ++K V     GL+K
Sbjct: 117 DVIQADGGTRTASITGAFVAL---SIAVNKAV---ERGLIK 151


>gi|257466146|ref|ZP_05630457.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917304|ref|ZP_07913544.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691179|gb|EFS28014.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R+I           GS L   G+T+ I   ++     E+    +  T + 
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASV----SEKVPSFIKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ +P ATGE ++     G  S R +   RL  RA+   +        T+ +  +
Sbjct: 59  WLTAEYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       L+  G     P+   VA +++G   +G+ F+   
Sbjct: 119 VIQADGGTRTASITGAFVAMAIAAAKLLREGTITESPVLSSVAAVSVGKC-EGNIFL--- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED    +D  V   D G
Sbjct: 175 DLNYVEDSSAEVDMNVIQNDLG 196


>gi|144897368|emb|CAM74232.1| RNase PH [Magnetospirillum gryphiswaldense MSR-1]
          Length = 241

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 22/230 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R I  + G  +   GS L   GDT  +   ++    +E+    L  T + 
Sbjct: 4   RPSGRAFDQLRVIRLETGFSRHAEGSCLAKFGDTHVLCTASV----EERVPPFLRNTGKG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   +   A   ++ G      RL  R++  V   TA     +++  +
Sbjct: 60  WVTAEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLDCD 119

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       L++AG    VP+   VA I+ G + +G   + L 
Sbjct: 120 VLQADGGTRTASITGAWVALHLAFQKLVEAGKLSAVPLIDQVAAISCG-IYEGQAVLDL- 177

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           D   D       +F + GT  GI  +Q   +    S +     L+ A++G
Sbjct: 178 DYPEDSSAQADANFVLTGT-GGIVEVQGTAEERPFSRDQFTQLLELAEKG 226


>gi|114769782|ref|ZP_01447392.1| ribonuclease PH [alpha proteobacterium HTCC2255]
 gi|114549487|gb|EAU52369.1| ribonuclease PH [alpha proteobacterium HTCC2255]
          Length = 237

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 38/238 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I  +VG  +   GS L   GDT  +   ++    +++    L  T  
Sbjct: 1   MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASV----EDRTPPWLRNTGM 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG  +R  A S ++ G      RL  R++   + +       + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-------MDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL       + AG     P+++ VA ++ G+   G   I+ 
Sbjct: 117 DVLQADGGTRCASITGGWIALRLAINAMIKAGDLKEDPLTEHVAAVSCGIY--GGQPILD 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQ----------------MDMKIGGISENIMV 518
            D + D +     +F + G++ G+  +Q                MD+   GISE I+ 
Sbjct: 175 LDYAEDSEAGTDANFVMTGSN-GLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIA 231


>gi|159046003|ref|YP_001534797.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
 gi|189043761|sp|A8LPD1|RNPH_DINSH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157913763|gb|ABV95196.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
          Length = 237

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R +S + G  +   GS L   G+T+ +   ++    +E+    L  T  
Sbjct: 1   MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASV----EERVPPFLRNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R  A + ++ G      RL  R++   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKP----VAGIAMGL 466
           ++ ++DG +  A++ G+ +A       LM AG  I+ P    VA ++ GL
Sbjct: 117 DVIQADGGTRCASITGAWVALRLAVNKLMKAGDIITDPLTDHVAAVSCGL 166


>gi|154175267|ref|YP_001407858.1| 30S ribosomal protein S1 [Campylobacter curvus 525.92]
 gi|112803420|gb|EAU00764.1| S1 RNA binding domain protein [Campylobacter curvus 525.92]
          Length = 557

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E + +I D  +V    +G + K+  +G FV   G  DGLVH S++S +     S +  E
Sbjct: 193 KEALANIVDNADV---IEGTIKKITTYGMFVD-VGGVDGLVHYSEISYKGPVNPSSLYNE 248

Query: 667 GDTVWVKLLDFDDRGK-IKLSMK 688
           GD V VK++ +D+  + + LS+K
Sbjct: 249 GDKVLVKVISYDNEKRHLSLSIK 271


>gi|332559239|ref|ZP_08413561.1| RNA binding protein [Rhodobacter sphaeroides WS8N]
 gi|332276951|gb|EGJ22266.1| RNA binding protein [Rhodobacter sphaeroides WS8N]
          Length = 773

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD
Sbjct: 655 LLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGD 701


>gi|307822918|ref|ZP_07653148.1| ribonuclease PH [Methylobacter tundripaludum SV96]
 gi|307735693|gb|EFO06540.1| ribonuclease PH [Methylobacter tundripaludum SV96]
          Length = 345

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+ + +RDI    G  +   GS L   GDT+ +   ++    D      L G   
Sbjct: 106 MRPSGRNPDQLRDIKFTCGFTKHAEGSVLVEFGDTRVLCTASV----DRSVPRFLKGKGE 161

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPY 421
                 Y  LP +T   SRMG    RE  +G          RL  R++   +   A   +
Sbjct: 162 GWITAEYGMLPRSTH--SRMG----REASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEH 215

Query: 422 TLRIVSEITESDGSSSMATVCGSSLAL 448
           T+ I  ++ ++DG +  A++ G  +AL
Sbjct: 216 TIMIDCDVLQADGGTRTASITGGFVAL 242


>gi|77464348|ref|YP_353852.1| RNA binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388766|gb|ABA79951.1| RNA binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 773

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD
Sbjct: 655 LLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGD 701


>gi|332884082|gb|EGK04362.1| hypothetical protein HMPREF9456_01390 [Dysgonomonas mossii DSM
           22836]
          Length = 708

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I++I D+ E      G V  + +FG FV      +GLVH+S+L+   V+  ++VV     
Sbjct: 628 IKTIEDLRE-GMTLPGIVTNITNFGCFVDVGIKENGLVHVSELADRFVSDPTEVVSLHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V++L  D  R +++LSMK 
Sbjct: 687 VEVRVLSVDISRKRVQLSMKT 707


>gi|297190576|ref|ZP_06907974.1| transcription accessory protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297150541|gb|EDY61798.2| transcription accessory protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 793

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  R
Sbjct: 651 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKSGDVVKVKVLDVDIPR 710

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L++++ D  T +P
Sbjct: 711 KRISLTLRLDDMATAQP 727


>gi|221640233|ref|YP_002526495.1| RNA binding S1 domain-containing protein [Rhodobacter sphaeroides
           KD131]
 gi|221161014|gb|ACM01994.1| RNA binding S1 domain protein [Rhodobacter sphaeroides KD131]
          Length = 773

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD
Sbjct: 655 LLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGD 701


>gi|157364475|ref|YP_001471242.1| RNA-binding S1 domain-containing protein [Thermotoga lettingae TMO]
 gi|157315079|gb|ABV34178.1| RNA binding S1 domain protein [Thermotoga lettingae TMO]
          Length = 117

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + +V  + K +V ++  FGA V       G +HIS+++ + V    D +K+G  V  K++
Sbjct: 1   MTKVGDVVKSKVTQITKFGAIVTLENGEAGFIHISKIANQYVKNVEDFLKQGQEVTAKII 60

Query: 676 DFDDRGKIKLSMK 688
                GK +LS+K
Sbjct: 61  GKTKDGKWELSLK 73


>gi|126463190|ref|YP_001044304.1| RNA-binding S1 domain-containing protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104854|gb|ABN77532.1| RNA binding S1 domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 773

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD
Sbjct: 655 LLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGD 701


>gi|224024678|ref|ZP_03643044.1| hypothetical protein BACCOPRO_01406 [Bacteroides coprophilus DSM
           18228]
 gi|224017900|gb|EEF75912.1| hypothetical protein BACCOPRO_01406 [Bacteroides coprophilus DSM
           18228]
          Length = 710

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I DV E  ++  G V  + +FG FV       GL+H+SQL+   V+  + VV     
Sbjct: 630 VRTIDDVQEGMEL-PGIVTNITNFGCFVDLGIKEKGLIHVSQLADRFVSDPTTVVSIHQH 688

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V+++  D +R +I L+MK
Sbjct: 689 VRVRVIGVDRERKRIALTMK 708


>gi|134295025|ref|YP_001118760.1| ribonuclease PH [Burkholderia vietnamiensis G4]
 gi|166228274|sp|A4JCC2|RNPH_BURVG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134138182|gb|ABO53925.1| RNAse PH [Burkholderia vietnamiensis G4]
          Length = 246

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   +   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRERGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ I  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTINIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G V +G   +   
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVG-VYEGAPVL--- 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T +G
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAG 200


>gi|92115795|ref|YP_575524.1| 30S ribosomal protein S1 [Nitrobacter hamburgensis X14]
 gi|91798689|gb|ABE61064.1| SSU ribosomal protein S1P [Nitrobacter hamburgensis X14]
          Length = 566

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LAIGQTVKVKIIKINHETHRISLGMK 269



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  Y G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 LNARYTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEV 344

Query: 678 DD-RGKIKLSMKVVDQNTGKPIV 699
           D  + +I L +K   +N  +  V
Sbjct: 345 DAVKRRISLGLKQTMRNPWEAFV 367


>gi|85706231|ref|ZP_01037326.1| 30S ribosomal protein S1 [Roseovarius sp. 217]
 gi|85669395|gb|EAQ24261.1| 30S ribosomal protein S1 [Roseovarius sp. 217]
          Length = 553

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTE-GQTVDGVVKNITEYGAFVDLGGV-DGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++
Sbjct: 221 DMAWRRVNHPSEILTIGETVKVQVIKINKDTHRISLGMKQLQED 264



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG F+   G  DG+VH+S LS  ER        K+GD V   + 
Sbjct: 361 PEGTEV-EGEVKNITEFGLFIGLEGEIDGMVHLSDLSWDERGEDAIQSYKKGDMVHAVVS 419

Query: 676 DFD-DRGKIKLSMKVV 690
           + D ++ +I LS+K +
Sbjct: 420 EVDIEKERISLSIKAL 435


>gi|218778660|ref|YP_002429978.1| RNA binding S1 domain protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760044|gb|ACL02510.1| RNA binding S1 domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 752

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V +FGAFV     +DGLVHISQLS   V   +DVVK    V V++L+ D  R +I
Sbjct: 645 GIVTNVTNFGAFVDVGVHQDGLVHISQLSDGFVKNPADVVKVQQRVKVRVLEVDLPRKRI 704

Query: 684 KLSMK 688
            LSMK
Sbjct: 705 SLSMK 709


>gi|37528679|ref|NP_932024.1| ribonuclease PH [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|61215997|sp|Q7MAX2|RNPH_PHOLL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|36788118|emb|CAE17242.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +E VR I+      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G    R +   RL  R++   +       YT+ + 
Sbjct: 57  GWVTAEYGMLPRSTHTRNAREAAR-GKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+V DG+    
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNKIVEAGKLKESPLKSMVAAVSVGIV-DGEGRCD 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L  +   ED     D  V   + G
Sbjct: 175 LEYV---EDSAAETDMNVVMMEDG 195


>gi|145224029|ref|YP_001134707.1| RNA-binding S1 domain-containing protein [Mycobacterium gilvum
           PYR-GCK]
 gi|145216515|gb|ABP45919.1| RNA binding S1 domain protein [Mycobacterium gilvum PYR-GCK]
          Length = 787

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           I +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G       +    +R
Sbjct: 667 ILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYVSDPHEVVRSGQVVRVKVVDVDVER 726

Query: 681 GKIKLSMKVVDQNT 694
            +I LSM++ D+ T
Sbjct: 727 QRIGLSMRLNDETT 740


>gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102]
 gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++R+I      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 8   GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKEQGWVT 63

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ +
Sbjct: 64  AEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 432 SDGSSSMATVCGSSLAL 448
           +DG +  A++ G+ +AL
Sbjct: 124 ADGGTRTASITGAYVAL 140


>gi|307942850|ref|ZP_07658195.1| ribosomal protein S1 [Roseibium sp. TrichSKD4]
 gi|307773646|gb|EFO32862.1| ribosomal protein S1 [Roseibium sp. TrichSKD4]
          Length = 564

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+++S+    E  +  +G V  + D+GAFV   G  DGL+H++ ++  R+   S+V
Sbjct: 186 EQRSELVQSL----EEGQTVEGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRINHPSEV 240

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV V+++  + D  +I L MK
Sbjct: 241 LTIGQTVKVQIIRVNQDTHRISLGMK 266



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN   +G+V    +FG F+   G  DG+VH+S L   R   +  D  K+GD V   +LD 
Sbjct: 369 VNTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIDEYKKGDMVRAVVLDV 428

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ +I L +K   Q  G P+
Sbjct: 429 DVEKERISLGIK---QLGGDPM 447



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V +L+ D  +
Sbjct: 286 FSGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVMILEVDPVK 345

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 346 RRISLGLKQTLQN 358


>gi|239830871|ref|ZP_04679200.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301]
 gi|239823138|gb|EEQ94706.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301]
          Length = 576

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 190 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 248

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 249 EILTIGQTVKVQIIRINQETHRISLGMKQLEND 281


>gi|149201246|ref|ZP_01878221.1| 30S ribosomal protein S1 [Roseovarius sp. TM1035]
 gi|149145579|gb|EDM33605.1| 30S ribosomal protein S1 [Roseovarius sp. TM1035]
          Length = 553

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTE-GQTVDGVVKNITEYGAFVDLGGV-DGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++
Sbjct: 221 DMAWRRVNHPSEILTIGETVKVQVIKINKDTHRISLGMKQLQED 264



 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG F+   G  DG+VH+S LS  ER        K+GD V   + 
Sbjct: 361 PEGTEV-EGEVKNITEFGLFIGLEGEIDGMVHLSDLSWDERGEDAIQSYKKGDMVHAVVS 419

Query: 676 DFD-DRGKIKLSMKVV 690
           + D ++ +I LS+K +
Sbjct: 420 EVDIEKERISLSIKAL 435


>gi|116494372|ref|YP_806106.1| RNA-binding protein [Lactobacillus casei ATCC 334]
 gi|191637707|ref|YP_001986873.1| RNA binding protein (S1 domain) [Lactobacillus casei BL23]
 gi|227534523|ref|ZP_03964572.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239629756|ref|ZP_04672787.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065883|ref|YP_003787906.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|116104522|gb|ABJ69664.1| RNA binding protein (S1 domain) [Lactobacillus casei ATCC 334]
 gi|190712009|emb|CAQ66015.1| RNA binding protein (S1 domain) [Lactobacillus casei BL23]
 gi|227187922|gb|EEI67989.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239528442|gb|EEQ67443.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438290|gb|ADK18056.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|327381766|gb|AEA53242.1| putative transcriptional accessory protein [Lactobacillus casei
           LC2W]
 gi|327384930|gb|AEA56404.1| putative transcriptional accessory protein [Lactobacillus casei
           BD-II]
          Length = 127

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G+V  V  +GAFV       GLVHIS+     V  TSD+   G  V V +LD D
Sbjct: 5   IGDILTGKVTGVQPYGAFVMLDEHTQGLVHISECQHGYVKDTSDIFTVGQRVEVVILDID 64

Query: 679 DRG-KIKLSMKVV 690
           +   KI LS++ +
Sbjct: 65  EYTQKISLSLRAL 77


>gi|148251724|ref|YP_001236309.1| 30S ribosomal protein S1 [Bradyrhizobium sp. BTAi1]
 gi|146403897|gb|ABQ32403.1| SSU ribosomal protein S1P [Bradyrhizobium sp. BTAi1]
          Length = 569

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 192 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 246

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 247 LSIGQTVKVKIIKINHETHRISLGMK 272



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  +
Sbjct: 292 FHGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVK 351

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   +N
Sbjct: 352 RRISLGLKQTMRN 364


>gi|224006742|ref|XP_002292331.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
 gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G V  +  +GAFV   G   GL+HISQ+S +R+     V++ G  +   ++D D   
Sbjct: 191 VIDGIVKALKPYGAFVE-VGGMSGLLHISQISMDRITDLEQVLQPGQKIKCMIIDHDKVN 249

Query: 681 GKIKLSMKVVDQNTGKPI 698
           G+I LS K ++   G  I
Sbjct: 250 GRIALSTKTLEPEPGDMI 267


>gi|307299324|ref|ZP_07579125.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915120|gb|EFN45506.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 571

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I++  +  EV +  +G V  + +FGAFV        L+  S++S +   + SD++K G
Sbjct: 182 EAIKAYFETIEVGQELEGTVESIKNFGAFVKLNDNVTALIPASEMSWDPSVRISDLLKPG 241

Query: 668 DTVWVKLLDFDD-RGKIKLSMK 688
            TV  K++  D+   KI LS+K
Sbjct: 242 QTVRTKVIGVDEAEKKISLSLK 263



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           SL+  EA  +  ++I D  +   I K +  KV+  G  +       G V +S++S   V 
Sbjct: 346 SLSYREAMGDPWQNIGDKYKEGDILKAKTAKVLPTGVILELEEYVSGFVPVSEVSWNFVD 405

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           +  DVVKEGD + VK+L  D    +++LS+K
Sbjct: 406 RIEDVVKEGDEIEVKILSIDSVNRRMRLSIK 436


>gi|254488080|ref|ZP_05101285.1| ribosomal protein S1 [Roseobacter sp. GAI101]
 gi|214044949|gb|EEB85587.1| ribosomal protein S1 [Roseobacter sp. GAI101]
          Length = 553

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S AE  A  E+I ++T+  EV+ + K     + ++GAFV   G  DGL+H++ ++ 
Sbjct: 172 ILEESRAEQRA--EVIGNLTEGQEVDGVVK----NITEYGAFVDLGGV-DGLLHVTDMAW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            RV   S+++  G+T+ V+++  + +  +I L MK + ++
Sbjct: 225 RRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQED 264


>gi|94263173|ref|ZP_01286991.1| RNA binding S1 [delta proteobacterium MLMS-1]
 gi|93456544|gb|EAT06658.1| RNA binding S1 [delta proteobacterium MLMS-1]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V ++ DFGAFV      DGLVHIS+L    R+    +VV+ GD + V++   D ++ 
Sbjct: 279 RGRVARLTDFGAFVTLAPGVDGLVHISKLGAGRRLNHPREVVQVGDELEVRVEAVDVEQK 338

Query: 682 KIKLSM 687
           +I L++
Sbjct: 339 RISLAV 344


>gi|85714048|ref|ZP_01045037.1| 30S ribosomal protein S1 [Nitrobacter sp. Nb-311A]
 gi|85699174|gb|EAQ37042.1| 30S ribosomal protein S1 [Nitrobacter sp. Nb-311A]
          Length = 567

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LAIGQTVKVKIIKINHETHRISLGMK 269



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  +
Sbjct: 289 FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVK 348

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   +N
Sbjct: 349 RRISLGLKQTMRN 361


>gi|90421921|ref|YP_530291.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris BisB18]
 gi|90103935|gb|ABD85972.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris BisB18]
          Length = 565

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LTIGQTVKVKIIKINHETHRISLGMK 269



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 LNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEV 344

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   +N
Sbjct: 345 DSVKRRISLGLKQTMRN 361


>gi|315444366|ref|YP_004077245.1| transcriptional accessory protein [Mycobacterium sp. Spyr1]
 gi|315262669|gb|ADT99410.1| transcriptional accessory protein [Mycobacterium sp. Spyr1]
          Length = 787

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           I +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G       +    +R
Sbjct: 667 ILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYVSDPHEVVRSGQVVRVKVVDVDVER 726

Query: 681 GKIKLSMKVVDQNT 694
            +I LSM++ D+ T
Sbjct: 727 QRIGLSMRLNDETT 740


>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
 gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 28/186 (15%)

Query: 312 VRMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTREDEQYVDS 365
           +R D R  S  +RD+  ++G+L +  GS  F +G+T  I  V     ++  + D+  +D 
Sbjct: 6   LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKEKGDQAIIDV 65

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +             F P       R    S  E  +  + R+ +  V+  T  +P T+  
Sbjct: 66  M-------------FQP-------RDKKASEEEKEYELIIRQTLENVI-LTNIYPRTVIT 104

Query: 426 VS-EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +S ++ + DG    A++  +SLAL+DAGV +   +   +   +  GD  +  + I  D  
Sbjct: 105 ISIQVVQYDGCLLSASLNAASLALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIEQDFS 164

Query: 485 HLGHMD 490
            + H D
Sbjct: 165 SILHND 170


>gi|126656406|ref|ZP_01727667.1| RNA binding S1 [Cyanothece sp. CCY0110]
 gi|126622092|gb|EAZ92799.1| RNA binding S1 [Cyanothece sp. CCY0110]
          Length = 717

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+ E   I +G +  V++FGAFV     +DGL+HISQL+   V+   +VVK 
Sbjct: 634 KEGVTEISDLTE-GMILEGVITNVVNFGAFVDIGVHQDGLIHISQLANYFVSDPKEVVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVV 690
           G+ V VK+L+ D + K I LSMK V
Sbjct: 693 GEVVKVKVLEIDQKLKRISLSMKEV 717


>gi|75674405|ref|YP_316826.1| 30S ribosomal protein S1 [Nitrobacter winogradskyi Nb-255]
 gi|74419275|gb|ABA03474.1| SSU ribosomal protein S1P [Nitrobacter winogradskyi Nb-255]
          Length = 567

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LAIGQTVKVKIIKINHETHRISLGMK 269



 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  +
Sbjct: 289 FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVK 348

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   +N
Sbjct: 349 RRISLGLKQTMRN 361


>gi|257452055|ref|ZP_05617354.1| ribonuclease PH [Fusobacterium sp. 3_1_5R]
 gi|317058603|ref|ZP_07923088.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
 gi|313684279|gb|EFS21114.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R+I           GS L   G+T+ I   ++     E+    +  T + 
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASV----SEKVPSFIKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ +P ATGE ++     G  S R +   RL  RA+   +        T+ +  +
Sbjct: 59  WLTAEYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       L+  G     P+   VA +++G   +G+ F+   
Sbjct: 119 VIQADGGTRTASITGAFVAMAIAAAKLLREGTITDSPVLSSVAAVSVGKC-EGNIFL--- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED    +D  V   D G
Sbjct: 175 DLNYVEDSSAEVDMNVIQNDLG 196


>gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
 gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++R+I      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 8   GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKEQGWVT 63

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ +
Sbjct: 64  AEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 432 SDGSSSMATVCGSSLAL 448
           +DG +  A++ G+ +AL
Sbjct: 124 ADGGTRTASITGAYVAL 140


>gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
 gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +           GS L   G+T+ +   ++         DS  G    
Sbjct: 9   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGW--- 65

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +     S  G    R     RL  R++   +  +     T+++  +
Sbjct: 66  -LTAEYSMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  PVA +++G++    D  I  
Sbjct: 125 VLQADGGTRTASITGAYVALADAIEYLKSEGVVPGEPLLDPVAAVSVGII----DGQICL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  +ED    +D  V   + G
Sbjct: 181 DLPYEEDSRAEVDLNVVMQEGG 202


>gi|115522477|ref|YP_779388.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris BisA53]
 gi|115516424|gb|ABJ04408.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris BisA53]
          Length = 565

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LTIGQTVKVKIIKINHETHRISLGMK 269



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 LNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEV 344

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   +N
Sbjct: 345 DSVKRRISLGLKQTMRN 361


>gi|116749271|ref|YP_845958.1| RNA-binding S1 domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698335|gb|ABK17523.1| RNA binding S1 domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 788

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     RDGLVH+S+LS   V     VV+    V V +LD D +RG+I
Sbjct: 670 GIVTNVTAFGAFVDIGVHRDGLVHVSELSDCFVKDPRQVVRVQQRVTVTVLDVDLERGRI 729

Query: 684 KLSMK 688
            LSMK
Sbjct: 730 SLSMK 734


>gi|313903625|ref|ZP_07837015.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466178|gb|EFR61702.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  ++D+GAF+     R GL+HIS++S   V +  D   +G+ V V+++ FD + GK 
Sbjct: 25  GTITGIVDYGAFLVTDDGRRGLIHISEISDWYVERAEDYFYKGERVQVEVVHFDPNSGKY 84

Query: 684 KLSMK 688
             S +
Sbjct: 85  AFSTR 89


>gi|237737804|ref|ZP_04568285.1| LytB protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419684|gb|EEO34731.1| LytB protein [Fusobacterium mortiferum ATCC 9817]
          Length = 540

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + + +V  V+DFG  V     R G VHIS++S +++ K +D  K+GD +  +++  
Sbjct: 188 KVGDVVEAEVTDVLDFGLSVKIGHLR-GFVHISEISWKKLEKLTDEYKKGDIIKGEIISL 246

Query: 678 D-DRGKIKLSMKVVDQN 693
           + ++  IKLS+K + +N
Sbjct: 247 EAEKKNIKLSIKALTRN 263



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V  + +G+V K++ +G FV      +GL+H+S  +  ++     + V+ GDTV V++L+F
Sbjct: 274 VGSVVEGKVTKLLPYGVFVEIADGVEGLIHMSDFTWNKKRVNLGEFVQVGDTVKVRVLEF 333

Query: 678 -DDRGKIKLSMKVVDQN 693
                K+KL +K + +N
Sbjct: 334 VPAERKLKLGIKQLCEN 350



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 610 IRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           I+++T  P        +V +  + ++  +MDFG F++     DG V     S + V    
Sbjct: 428 IKALTKSPWEVALETYKVGQTVEKEIKNIMDFGLFLNLSKGVDGFVPAQMASKDFVKNLK 487

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           D  K GD V  ++++ D ++ +IKLS+K ++
Sbjct: 488 DKFKVGDVVKAQIVEIDKEKQRIKLSIKKIE 518


>gi|90420974|ref|ZP_01228878.1| 30S ribosomal subunit protein S1 [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334752|gb|EAS48528.1| 30S ribosomal subunit protein S1 [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 566

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GD 668
           S  D   +  I +G+V    +FG F+   G  DG+VH+S L   R  +   V++E   GD
Sbjct: 361 SFRDQFPIGTIVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQ--VIEEFNKGD 418

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            V  ++LD D D+ +I L MK   Q  G P V
Sbjct: 419 LVKAQVLDVDIDKERISLGMK---QVGGDPFV 447



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVDGIVKNITDYGAFVDLGGI-DGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   +++++ G TV V+++  + +  +I L MK
Sbjct: 227 DMAWRRVNHPTEILQIGQTVKVQIIRINQETHRISLGMK 265


>gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|256787469|ref|ZP_05525900.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|21759422|sp|Q9S2H7|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y  LP AT           R+G  +  EI   RL  R++  V+   A    T+ +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVKGRIGGRT-HEI--SRLIGRSLRAVIDYKALGENTVVL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V    D
Sbjct: 116 DCDVLQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIV----D 171

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
              L D+  +ED     D  V  T  G
Sbjct: 172 GTPLLDLRYEEDVRADTDMNVVCTGDG 198


>gi|254464531|ref|ZP_05077942.1| ribosomal protein S1 [Rhodobacterales bacterium Y4I]
 gi|206685439|gb|EDZ45921.1| ribosomal protein S1 [Rhodobacterales bacterium Y4I]
          Length = 559

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLSE-GQAVDGVVKNITEYGAFVDLGGV-DGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQED 270



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LNSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DGAKRRVSLGLKQTMRN 357



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + 
Sbjct: 367 PEGTQV-EGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDVVQAVVS 425

Query: 676 DFD-DRGKIKLSMKVV 690
           + D D+ +I LS+K +
Sbjct: 426 EVDVDKERISLSIKAL 441


>gi|146337269|ref|YP_001202317.1| 30S ribosomal protein S1 [Bradyrhizobium sp. ORS278]
 gi|146190075|emb|CAL74067.1| 30S ribosomal subunit protein S1 [Bradyrhizobium sp. ORS278]
          Length = 569

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 192 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 246

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 247 LSIGQTVKVKIIKINHETHRISLGMK 272



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  +
Sbjct: 292 FHGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVK 351

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   +N
Sbjct: 352 RRISLGLKQTMRN 364


>gi|39933144|ref|NP_945420.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris CGA009]
 gi|192288500|ref|YP_001989105.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris TIE-1]
 gi|81564498|sp|Q6NDP1|RS1_RHOPA RecName: Full=30S ribosomal protein S1; AltName: Full=RRP-S1
 gi|39652769|emb|CAE25508.1| ribosomal protein S1 [Rhodopseudomonas palustris CGA009]
 gi|192282249|gb|ACE98629.1| ribosomal protein S1 [Rhodopseudomonas palustris TIE-1]
          Length = 565

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LTIGQTVKVKIIKINHETHRISLGMK 269



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 LNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEV 344

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   +N
Sbjct: 345 DSVKRRISLGLKQTMRN 361


>gi|68466849|ref|XP_722620.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
 gi|68467128|ref|XP_722479.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444457|gb|EAL03732.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444607|gb|EAL03881.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
          Length = 1722

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN   +G + + +   +E+    +++++  D+ ++  I++G V    DFG FV   G
Sbjct: 1200 GKIVNCKQEGRI-LMTLKESEVNGELKIMKTFDDL-QIGDIFEGTVTSTTDFGVFVKLDG 1257

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              +  GL H S++S   V     +   GD V VK+L  D ++ ++ L MK
Sbjct: 1258 TVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMK 1307


>gi|316931461|ref|YP_004106443.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris DX-1]
 gi|315599175|gb|ADU41710.1| ribosomal protein S1 [Rhodopseudomonas palustris DX-1]
          Length = 565

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LTIGQTVKVKIIKINHETHRISLGMK 269



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 LNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEV 344

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   +N
Sbjct: 345 DSVKRRISLGLKQTMRN 361


>gi|238882053|gb|EEQ45691.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1726

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN   +G + + +   +E+    +++++  D+ ++  I++G V    DFG FV   G
Sbjct: 1204 GKIVNCKQEGRI-LMTLKESEVNGELKIMKTFDDL-QIGDIFEGTVTSTTDFGVFVKLDG 1261

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              +  GL H S++S   V     +   GD V VK+L  D ++ ++ L MK
Sbjct: 1262 TVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMK 1311


>gi|119482079|ref|XP_001261068.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
 gi|119409222|gb|EAW19171.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
          Length = 1819

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V ++  G+V KV +FGAF+    + +  GL H S+++ +RV     + +EGD V  K++
Sbjct: 1318 KVGQVVTGKVRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAKII 1377

Query: 676  DFD-DRGKIKLSMK 688
              D + GKI  S+K
Sbjct: 1378 KVDRESGKISFSLK 1391


>gi|255524050|ref|ZP_05391012.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296186906|ref|ZP_06855307.1| S1 RNA binding domain protein [Clostridium carboxidivorans P7]
 gi|255512337|gb|EET88615.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296048620|gb|EFG88053.1| S1 RNA binding domain protein [Clostridium carboxidivorans P7]
          Length = 135

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAFV   G + GLVHIS++S   V    D +KE D V VK++  D+ G
Sbjct: 8   ILEGTVVNITSFGAFVEIDG-KTGLVHISEVSDTYVKNIRDYLKEKDKVKVKVISVDENG 66

Query: 682 KIKLSMK 688
           KI LS+K
Sbjct: 67  KISLSIK 73


>gi|254437855|ref|ZP_05051349.1| ribosomal protein S1 [Octadecabacter antarcticus 307]
 gi|198253301|gb|EDY77615.1| ribosomal protein S1 [Octadecabacter antarcticus 307]
          Length = 555

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 7/79 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVK 673
           PE  ++ +G+V  + +FG FV   G  DG+VH+S L+ E   +  DV+   ++GD V  K
Sbjct: 361 PEGTEV-EGEVKNITEFGLFVGLDGDIDGMVHLSDLTWE--GRGEDVIGDFRKGDVVNAK 417

Query: 674 LLDFD-DRGKIKLSMKVVD 691
           + + D ++ +I LS+K +D
Sbjct: 418 VTEVDVEKERISLSIKAMD 436



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 8/95 (8%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S AE  A  E+I ++T+  EV+ + K     + ++GAFV   G  DGL+H++ ++ 
Sbjct: 172 ILEESRAEQRA--EVIGNLTEGQEVDGVVK----NITEYGAFVDLGGV-DGLLHVTDMAW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            RV   S+++  G+T+ V+++  + +  +I L MK
Sbjct: 225 RRVNHPSEILTIGETIKVQVIKINKETHRISLGMK 259



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D+ +
Sbjct: 279 HTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDESK 338

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K   +N
Sbjct: 339 RRVSLGLKQTQRN 351


>gi|150400715|ref|YP_001324481.1| DNA-directed RNA polymerase subunit E' [Methanococcus aeolicus
           Nankai-3]
 gi|150013418|gb|ABR55869.1| DNA-directed RNA polymerase [Methanococcus aeolicus Nankai-3]
          Length = 195

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           PE+ +I +G++V V++FG FV   G  DGL+HISQ+  + V+           ++  V++
Sbjct: 79  PELYEIIEGEIVDVVEFGLFVRL-GPLDGLIHISQIMDDFVSYDPQRGAIIGKESGKVIE 137

Query: 666 EGDTVWVKLLDFDDR------GKIKLSMKVVDQNTGK 696
           +GD V  +++    R       KI L+M+   Q  GK
Sbjct: 138 KGDKVRARIVAISLREAKRRGSKIALTMR--QQGLGK 172


>gi|46111359|ref|XP_382737.1| hypothetical protein FG02561.1 [Gibberella zeae PH-1]
          Length = 1782

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 620  NKIYKGQVV-----KVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWV 672
            N I +GQVV     KV +FGAF+   G+ +  GL H SQ++ + V   + + KEGD V  
Sbjct: 1284 NDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKA 1343

Query: 673  KLLDFD 678
            ++L  D
Sbjct: 1344 RVLSVD 1349


>gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
 gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  I  GQV +V  FG FV    +   GL H+S+LS E V   +   K GD V  K+L  
Sbjct: 1401 VGDIIDGQVKRVESFGLFVTIRRSELVGLCHVSELSDEPVVDINSCYKAGDMVKAKILKI 1460

Query: 678  DD-RGKIKLSMK 688
            D+ R ++ L MK
Sbjct: 1461 DEKRHRVSLGMK 1472


>gi|254409968|ref|ZP_05023748.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
 gi|196183004|gb|EDX77988.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R    +R IS   G  +    S L   GDTQ +  VT+           L GT   
Sbjct: 5   RPDHRQPNQLRPISFVRGFTKFAPASVLTKCGDTQVLCNVTI----QPGIPRFLEGTGSG 60

Query: 373 DFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT   +   +   S R     RL  R++   +  TA    T+ + +++ 
Sbjct: 61  WLTAEYRMLPGATPQRQTRELLKLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A++ G  +AL +A             PI   +A +++GL+  G+ F+   D+
Sbjct: 121 QADAGTRTASITGGYVALAEALDKLVQAGELERSPIRHQIAAVSVGLLA-GEPFL---DL 176

Query: 480 SGDEDHLGHMDFKVAGTD 497
             +ED     DF +   D
Sbjct: 177 KYEEDVAAQTDFNIVMND 194


>gi|77412776|ref|ZP_00788989.1| polyribonucleotide nucleotidyltransferase [Streptococcus
          agalactiae CJB111]
 gi|77161173|gb|EAO72271.1| polyribonucleotide nucleotidyltransferase [Streptococcus
          agalactiae CJB111]
          Length = 87

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 8  EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF 56
          E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DF
Sbjct: 14 EMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DF 61


>gi|172038374|ref|YP_001804875.1| RNA binding S1 protein [Cyanothece sp. ATCC 51142]
 gi|171699828|gb|ACB52809.1| probable RNA binding S1 protein [Cyanothece sp. ATCC 51142]
          Length = 718

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+ E   I +G +  V++FGAFV     +DGL+HISQL+   V+   +VVK 
Sbjct: 635 KEGVTEINDLRE-GMILEGVITNVVNFGAFVDIGVHQDGLIHISQLANYFVSDPKEVVKV 693

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVV 690
           G+ V VK+L+ D++ K I LSMK V
Sbjct: 694 GEVVKVKVLEIDEKLKRISLSMKEV 718


>gi|209883625|ref|YP_002287482.1| ribosomal protein S1 [Oligotropha carboxidovorans OM5]
 gi|209871821|gb|ACI91617.1| ribosomal protein S1 [Oligotropha carboxidovorans OM5]
          Length = 566

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 190 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 244

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 245 LTIGQTVKVKIIKINHETHRISLGMK 270


>gi|308234186|ref|ZP_07664923.1| RNAse PH [Atopobium vaginae DSM 15829]
 gi|328944441|ref|ZP_08241903.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
 gi|327491025|gb|EGF22802.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 29/229 (12%)

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           EG+ ++V +  + + +         R  GR +   R  + +  +++   GS L   GDT+
Sbjct: 13  EGKSLAVCDQTRVQTISQKSNSVHARSYGRSAFEARPCTLERQVMKYADGSCLITCGDTR 72

Query: 348 ----AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR--REIGH 401
               A V  TL T     ++  +S          Y  LP +    +      R  R +  
Sbjct: 73  VLCSATVEDTLPTWRKLSHLGWVSA--------EYAMLPASAKRRTPREYKGRKGRSMEI 124

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG--------- 452
            RL  R++  V+  +    +T+ I  ++ ++DG +  A++ G+ +AL DA          
Sbjct: 125 ERLIGRSLRSVVDFSKLGEHTITIDCDVLQADGGTRTASIVGAWVALHDACRKMVEADKI 184

Query: 453 --VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
              P++  VA I+MG+V  G+   +L D+   ED    +D  V   D G
Sbjct: 185 ARCPLTGQVAAISMGIVH-GE---LLVDLDYPEDSNADVDLNVVMRDDG 229



 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 25/184 (13%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
            RP  LE  ++ + +DG+ L T G+T VL +   + +L   +    L   +    YA+  
Sbjct: 47  ARPCTLER-QVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHL--GWVSAEYAM-- 101

Query: 73  IPGGYLRRESRPTENE----ILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSP 126
           +P    RR  R  +      + I R+I RS+R +  FSK  ++   +  +V+Q D     
Sbjct: 102 LPASAKRRTPREYKGRKGRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQAD--GGT 159

Query: 127 HVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-L 174
              S+V A  AL            ++  P  G V    +  ++G+ +++    ED  + +
Sbjct: 160 RTASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGELLVDLDYPEDSNADV 219

Query: 175 DLFV 178
           DL V
Sbjct: 220 DLNV 223


>gi|94268201|ref|ZP_01291117.1| RNA binding S1 [delta proteobacterium MLMS-1]
 gi|93451696|gb|EAT02473.1| RNA binding S1 [delta proteobacterium MLMS-1]
          Length = 410

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V ++ DFGAFV      DGLVHIS+L    R+    +VV+ GD + V++   D ++ 
Sbjct: 279 RGRVARLTDFGAFVTLAPGVDGLVHISKLGAGRRLNHPREVVQVGDELEVRVEAVDVEQK 338

Query: 682 KIKLSM 687
           +I L++
Sbjct: 339 RISLAV 344


>gi|87308273|ref|ZP_01090414.1| ribonuclease PH [Blastopirellula marina DSM 3645]
 gi|87288830|gb|EAQ80723.1| ribonuclease PH [Blastopirellula marina DSM 3645]
          Length = 237

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 33/204 (16%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R++  +    +   GS L   G T  +   ++    +      L G+ + 
Sbjct: 3   RHDGRKANQLRELKIKRRFTKNAAGSVLIQTGATTVLCTASV----ESSVPPWLKGSGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR-------REIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                YN LP +T        P+R       R     RL  R++  V    A     + +
Sbjct: 59  WITAEYNMLPGST--------PTRKSRKVDGRTTEIQRLIGRSLRAVADLEALGEQMITV 110

Query: 426 VSEITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFII 475
             ++ ++DG +  A++ G+ +AL+DA            P+   VA +++GLV        
Sbjct: 111 DCDVLDADGGTRTASITGAFIALVDALQTIVLPDPKKFPLVDSVAAVSVGLVNGAGAL-- 168

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+   ED    +D  V  T SG
Sbjct: 169 --DLDYIEDVDAAVDMNVVMTGSG 190


>gi|313206084|ref|YP_004045261.1| tex-like protein [Riemerella anatipestifer DSM 15868]
 gi|312445400|gb|ADQ81755.1| Tex-like protein [Riemerella anatipestifer DSM 15868]
 gi|315023735|gb|EFT36738.1| putative RNA binding protein with S1 RNA-binding domain [Riemerella
           anatipestifer RA-YM]
 gi|325336473|gb|ADZ12747.1| Transcriptional accessory protein [Riemerella anatipestifer RA-GD]
          Length = 708

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I++I D+ +V     G V  +  FG FV       GL+HISQL+   V+  ++VVK   T
Sbjct: 629 IKTIADI-KVGLSLPGIVNNITAFGCFVDIGIKESGLIHISQLTDGFVSDVNEVVKLHQT 687

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V V++L+ D+ R +I L +
Sbjct: 688 VEVQVLEIDEVRKRIGLKL 706


>gi|308482650|ref|XP_003103528.1| hypothetical protein CRE_28700 [Caenorhabditis remanei]
 gi|308259949|gb|EFP03902.1| hypothetical protein CRE_28700 [Caenorhabditis remanei]
          Length = 586

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK--IASSSLAEIEAAREMIRSI 613
           M +P +++  VIG+ G  I  I EQ+ A +  D  G VK  + S +  ++E A+ +I+ +
Sbjct: 435 MNVPTEKVDQVIGVSGSYINLIREQSNACIEYDPRGPVKKFLISGTTVQVETAKALIKEV 494

Query: 614 TDVP 617
           TD P
Sbjct: 495 TDGP 498


>gi|299133337|ref|ZP_07026532.1| ribosomal protein S1 [Afipia sp. 1NLS2]
 gi|298593474|gb|EFI53674.1| ribosomal protein S1 [Afipia sp. 1NLS2]
          Length = 566

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 190 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 244

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 245 LTIGQTVKVKIIKINHETHRISLGMK 270


>gi|302505220|ref|XP_003014831.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
 gi|291178137|gb|EFE33928.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
          Length = 1820

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            ++ +I  G+V KV ++GAF+   G+ +  GL H S+++ +RV   + + ++ D V  K+L
Sbjct: 1331 KIGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1390

Query: 676  DFD-DRGKIKLSMK 688
              D ++G+I L +K
Sbjct: 1391 KVDLEKGQIALGLK 1404


>gi|260574087|ref|ZP_05842092.1| ribosomal protein S1 [Rhodobacter sp. SW2]
 gi|259023553|gb|EEW26844.1| ribosomal protein S1 [Rhodobacter sp. SW2]
          Length = 560

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   I  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLTEGQSI-DGVVKNITEYGAFVDLGGV-DGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G+TV V+++  + D  +I L MK
Sbjct: 227 DMAWRRVNHPSEILAIGETVKVQVIKINKDTHRISLGMK 265



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LHSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DSAKRRVSLGLKQTQRN 357


>gi|154485040|ref|ZP_02027488.1| hypothetical protein EUBVEN_02758 [Eubacterium ventriosum ATCC
           27560]
 gi|149733993|gb|EDM50112.1| hypothetical protein EUBVEN_02758 [Eubacterium ventriosum ATCC
           27560]
          Length = 711

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFGAFV     +DGLVHIS++S + +    DVV  GD V V++L  D +R +
Sbjct: 645 KGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHPLDVVSVGDVVDVRVLSVDKERKR 704

Query: 683 IKLSMK 688
           I+LSMK
Sbjct: 705 IQLSMK 710


>gi|332878619|ref|ZP_08446339.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683520|gb|EGJ56397.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 707

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++  DV  V  +  G V  +  FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 628 VKTFDDV-RVGMVLPGIVNNITAFGCFVDIGLKESGLVHISQLKDGYVSDVNEVVKLHQQ 686

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+ + D+ R +I LSM
Sbjct: 687 VEVKVTEVDEARHRISLSM 705


>gi|330831556|ref|YP_004394508.1| RNase PH [Aeromonas veronii B565]
 gi|328806692|gb|AEB51891.1| RNase PH [Aeromonas veronii B565]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +  +R ++      +   GS L   G+T+ +   ++    D      L G  + 
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASV----DTSVPRFLKGKNQG 58

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +T   SRM      G  S R +   RL  R++   +  TA   +++ + 
Sbjct: 59  WVTAEYGMLPRSTH--SRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             P+ + +A +++G+ + G+    
Sbjct: 117 CDVLQADGGTRTASITGACVALVDALNWMVEKGMIKQSPLKQMIAAVSVGMYQ-GE---A 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T+ G
Sbjct: 173 ICDLEYIEDSAAETDMNVVMTEDG 196


>gi|260430863|ref|ZP_05784835.1| protein YhgF [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418304|gb|EEX11562.1| protein YhgF [Silicibacter lacuscaerulensis ITI-1157]
          Length = 810

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 20/126 (15%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGA------KVNIDDDGTVKIASSSLAEIE---------- 604
           D  R ++   G+ IR I+   GA      +  +DD   +       AE+E          
Sbjct: 611 DVARRIVQACGRDIRQIMGNDGALRGLRAEQFVDDRFGLPTVRDIFAELEKPGRDPRPSF 670

Query: 605 ---AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
              + +E +  ITD+ +   + +G V  V  FGAFV     +DGLVH+S+L+   V    
Sbjct: 671 VTASFKEGVEEITDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSELADRFVKDPH 729

Query: 662 DVVKEG 667
           +VVK G
Sbjct: 730 EVVKAG 735


>gi|237814503|ref|ZP_04593501.1| ribosomal protein S1 [Brucella abortus str. 2308 A]
 gi|237789340|gb|EEP63550.1| ribosomal protein S1 [Brucella abortus str. 2308 A]
          Length = 576

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 190 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 248

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 249 EILTIGQTVKVQIIRINQETHRISLGMKQLESD 281


>gi|257125153|ref|YP_003163267.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049092|gb|ACV38276.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
          Length = 721

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV      D L+HIS+++ + V+  +  +  G  + VK+L  D +R
Sbjct: 652 VLEGTVRNVAKFGAFVDIGLKNDALIHISEIAEKFVSDATKELSVGQIIKVKILSLDKER 711

Query: 681 GKIKLSMK 688
           G++ L+ K
Sbjct: 712 GRVGLTRK 719


>gi|167569750|ref|ZP_02362624.1| transcription accessory protein, TEX [Burkholderia oklahomensis
           C6786]
          Length = 324

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ V    +VVK 
Sbjct: 194 REGVEKVSDL-TPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFVKDPHEVVKA 252

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 253 GQVVKVKVLDVDVKRQRISLTMRLDD 278


>gi|86747766|ref|YP_484262.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris HaA2]
 gi|86570794|gb|ABD05351.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris HaA2]
          Length = 565

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LTIGQTVKVKIIKINHETHRISLGMK 269



 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 LNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEV 344

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   +N
Sbjct: 345 DSVKRRISLGLKQTMRN 361


>gi|225626575|ref|ZP_03784614.1| ribosomal protein S1 [Brucella ceti str. Cudo]
 gi|294851434|ref|ZP_06792107.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026]
 gi|17983961|gb|AAL53096.1| ssu ribosomal protein s1p [Brucella melitensis bv. 1 str. 16M]
 gi|225618232|gb|EEH15275.1| ribosomal protein S1 [Brucella ceti str. Cudo]
 gi|294820023|gb|EFG37022.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026]
          Length = 576

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 190 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 248

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 249 EILTIGQTVKVQIIRINQETHRISLGMKQLESD 281


>gi|254713388|ref|ZP_05175199.1| 30S ribosomal protein S1 [Brucella ceti M644/93/1]
 gi|254716254|ref|ZP_05178065.1| 30S ribosomal protein S1 [Brucella ceti M13/05/1]
 gi|261218030|ref|ZP_05932311.1| ribosomal protein S1 [Brucella ceti M13/05/1]
 gi|261321120|ref|ZP_05960317.1| ribosomal protein S1 [Brucella ceti M644/93/1]
 gi|260923119|gb|EEX89687.1| ribosomal protein S1 [Brucella ceti M13/05/1]
 gi|261293810|gb|EEX97306.1| ribosomal protein S1 [Brucella ceti M644/93/1]
          Length = 566

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILTIGQTVKVQIIRINQETHRISLGMKQLESD 271


>gi|23500942|ref|NP_697069.1| 30S ribosomal protein S1 [Brucella suis 1330]
 gi|148560426|ref|YP_001258073.1| 30S ribosomal protein S1 [Brucella ovis ATCC 25840]
 gi|161511120|ref|NP_540832.2| 30S ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
 gi|161618017|ref|YP_001591904.1| 30S ribosomal protein S1 [Brucella canis ATCC 23365]
 gi|163842303|ref|YP_001626707.1| 30S ribosomal protein S1 [Brucella suis ATCC 23445]
 gi|225851571|ref|YP_002731804.1| 30S ribosomal protein S1 [Brucella melitensis ATCC 23457]
 gi|254690342|ref|ZP_05153596.1| 30S ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
 gi|254694831|ref|ZP_05156659.1| 30S ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
 gi|254700843|ref|ZP_05162671.1| 30S ribosomal protein S1 [Brucella suis bv. 5 str. 513]
 gi|254705209|ref|ZP_05167037.1| 30S ribosomal protein S1 [Brucella suis bv. 3 str. 686]
 gi|254707271|ref|ZP_05169099.1| 30S ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
 gi|254709187|ref|ZP_05170998.1| 30S ribosomal protein S1 [Brucella pinnipedialis B2/94]
 gi|254718248|ref|ZP_05180059.1| 30S ribosomal protein S1 [Brucella sp. 83/13]
 gi|256030711|ref|ZP_05444325.1| 30S ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
 gi|256060170|ref|ZP_05450352.1| 30S ribosomal protein S1 [Brucella neotomae 5K33]
 gi|256112535|ref|ZP_05453456.1| 30S ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
 gi|256158714|ref|ZP_05456593.1| 30S ribosomal protein S1 [Brucella ceti M490/95/1]
 gi|256254116|ref|ZP_05459652.1| 30S ribosomal protein S1 [Brucella ceti B1/94]
 gi|256258596|ref|ZP_05464132.1| 30S ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
 gi|256264918|ref|ZP_05467450.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
 gi|256368492|ref|YP_003105998.1| 30S ribosomal protein S1 [Brucella microti CCM 4915]
 gi|260169614|ref|ZP_05756425.1| 30S ribosomal protein S1 [Brucella sp. F5/99]
 gi|260563108|ref|ZP_05833594.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
 gi|260567325|ref|ZP_05837795.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260755883|ref|ZP_05868231.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
 gi|260884907|ref|ZP_05896521.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
 gi|261215158|ref|ZP_05929439.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
 gi|261221257|ref|ZP_05935538.1| ribosomal protein S1 [Brucella ceti B1/94]
 gi|261314754|ref|ZP_05953951.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
 gi|261316687|ref|ZP_05955884.1| ribosomal protein S1 [Brucella pinnipedialis B2/94]
 gi|261324148|ref|ZP_05963345.1| ribosomal protein S1 [Brucella neotomae 5K33]
 gi|261751352|ref|ZP_05995061.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513]
 gi|261755917|ref|ZP_05999626.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686]
 gi|261759142|ref|ZP_06002851.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|265983208|ref|ZP_06095943.1| ribosomal protein S1 [Brucella sp. 83/13]
 gi|265987757|ref|ZP_06100314.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
 gi|265993974|ref|ZP_06106531.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
 gi|265997218|ref|ZP_06109775.1| ribosomal protein S1 [Brucella ceti M490/95/1]
 gi|297247435|ref|ZP_06931153.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196]
 gi|306839990|ref|ZP_07472784.1| ribosomal protein S1 [Brucella sp. NF 2653]
 gi|306842680|ref|ZP_07475323.1| ribosomal protein S1 [Brucella sp. BO2]
 gi|306843627|ref|ZP_07476228.1| ribosomal protein S1 [Brucella sp. BO1]
 gi|23346797|gb|AAN28984.1| ribosomal protein S1 [Brucella suis 1330]
 gi|148371683|gb|ABQ61662.1| ribosomal protein S1 [Brucella ovis ATCC 25840]
 gi|161334828|gb|ABX61133.1| ribosomal protein S1 [Brucella canis ATCC 23365]
 gi|163673026|gb|ABY37137.1| ribosomal protein S1 [Brucella suis ATCC 23445]
 gi|225639936|gb|ACN99849.1| ribosomal protein S1 [Brucella melitensis ATCC 23457]
 gi|255998650|gb|ACU47049.1| 30S ribosomal protein S1 [Brucella microti CCM 4915]
 gi|260153124|gb|EEW88216.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
 gi|260156843|gb|EEW91923.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260675991|gb|EEX62812.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
 gi|260874435|gb|EEX81504.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
 gi|260916765|gb|EEX83626.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
 gi|260919841|gb|EEX86494.1| ribosomal protein S1 [Brucella ceti B1/94]
 gi|261295910|gb|EEX99406.1| ribosomal protein S1 [Brucella pinnipedialis B2/94]
 gi|261300128|gb|EEY03625.1| ribosomal protein S1 [Brucella neotomae 5K33]
 gi|261303780|gb|EEY07277.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
 gi|261739126|gb|EEY27122.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|261741105|gb|EEY29031.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513]
 gi|261745670|gb|EEY33596.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686]
 gi|262551686|gb|EEZ07676.1| ribosomal protein S1 [Brucella ceti M490/95/1]
 gi|262764955|gb|EEZ10876.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
 gi|263095403|gb|EEZ19004.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
 gi|264659954|gb|EEZ30215.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
 gi|264661800|gb|EEZ32061.1| ribosomal protein S1 [Brucella sp. 83/13]
 gi|297174604|gb|EFH33951.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196]
 gi|306276318|gb|EFM58018.1| ribosomal protein S1 [Brucella sp. BO1]
 gi|306287126|gb|EFM58628.1| ribosomal protein S1 [Brucella sp. BO2]
 gi|306404954|gb|EFM61239.1| ribosomal protein S1 [Brucella sp. NF 2653]
 gi|326408040|gb|ADZ65105.1| 30S ribosomal protein S1 [Brucella melitensis M28]
 gi|326537757|gb|ADZ85972.1| ribosomal protein S1 [Brucella melitensis M5-90]
          Length = 566

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILTIGQTVKVQIIRINQETHRISLGMKQLESD 271


>gi|62289016|ref|YP_220809.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941]
 gi|82698954|ref|YP_413528.1| 30S ribosomal protein S1 [Brucella melitensis biovar Abortus 2308]
 gi|189023292|ref|YP_001934060.1| 30S ribosomal protein S1 [Brucella abortus S19]
 gi|254696460|ref|ZP_05158288.1| 30S ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731372|ref|ZP_05189950.1| 30S ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
 gi|260546309|ref|ZP_05822049.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260759107|ref|ZP_05871455.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
 gi|260760832|ref|ZP_05873175.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
 gi|62195148|gb|AAX73448.1| RpsA, ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941]
 gi|82615055|emb|CAJ09981.1| Ribosomal protein S1:RNA binding S1 [Brucella melitensis biovar
           Abortus 2308]
 gi|189018864|gb|ACD71586.1| Ribosomal protein S1 [Brucella abortus S19]
 gi|260096416|gb|EEW80292.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260669425|gb|EEX56365.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
 gi|260671264|gb|EEX58085.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
          Length = 566

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILTIGQTVKVQIIRINQETHRISLGMKQLESD 271


>gi|91974674|ref|YP_567333.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris BisB5]
 gi|91681130|gb|ABE37432.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris BisB5]
          Length = 565

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E+++++    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 189 EQRQELVQNL----EEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 243

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 244 LTIGQTVKVKIIKINHETHRISLGMK 269



 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +N  + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ 
Sbjct: 285 LNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVDVQVLEV 344

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + +I L +K   +N
Sbjct: 345 DSVKRRISLGLKQTMRN 361


>gi|242046826|ref|XP_002461159.1| hypothetical protein SORBIDRAFT_02g041940 [Sorghum bicolor]
 gi|241924536|gb|EER97680.1| hypothetical protein SORBIDRAFT_02g041940 [Sorghum bicolor]
          Length = 937

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 10/103 (9%)

Query: 596 ASSSLAEIEAAREMIRSI--TDVPEVNK-------IYKGQVVKVMDFGAFVHFCGARDGL 646
           A +S  +  + R++ R+I  +++P +N+        + G+V+ +  FG FV      +GL
Sbjct: 111 AEASTGQASSPRKLGRNIRKSEMPPLNEEDLVPGASFTGKVMSIKPFGVFVDIGAYTEGL 170

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           VHIS++S   V   S +   G  V V+LL+ +   K I L+M+
Sbjct: 171 VHISRVSDGFVKDISSLFTVGQEVSVRLLEANKETKRISLTMR 213


>gi|256810767|ref|YP_003128136.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           fervens AG86]
 gi|256793967|gb|ACV24636.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           fervens AG86]
          Length = 263

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK G  V  
Sbjct: 4   EFPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVA 63

Query: 673 KLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           K+L  D+ +G I LS+K V +   +  V
Sbjct: 64  KVLRVDEKKGHIDLSLKRVTEQQKRAKV 91


>gi|254454768|ref|ZP_05068205.1| ribosomal protein S1 [Octadecabacter antarcticus 238]
 gi|198269174|gb|EDY93444.1| ribosomal protein S1 [Octadecabacter antarcticus 238]
          Length = 555

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 7/79 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVK 673
           PE  ++ +G+V  + +FG FV   G  DG+VH+S L+ E   +  DV+   ++GD V  K
Sbjct: 361 PEGTEV-EGEVKNITEFGLFVGLDGDIDGMVHLSDLTWE--GRGEDVIGDFRKGDIVNAK 417

Query: 674 LLDFD-DRGKIKLSMKVVD 691
           + + D ++ +I LS+K +D
Sbjct: 418 VTEVDVEKERISLSIKAMD 436



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 8/95 (8%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S AE  A  E+I ++T+  EV+ + K     + ++GAFV   G  DGL+H++ ++ 
Sbjct: 172 ILEESRAEQRA--EVIGNLTEGQEVDGVVK----NITEYGAFVDLGGV-DGLLHVTDMAW 224

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            RV   S+++  G+T+ V+++  + +  +I L MK
Sbjct: 225 RRVNHPSEILTIGETIKVQVIKINKETHRISLGMK 259



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LDSVHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 334

Query: 678 DD-RGKIKLSMKVVDQN 693
           D+ + ++ L +K   +N
Sbjct: 335 DEAKRRVSLGLKQTQRN 351


>gi|254252272|ref|ZP_04945590.1| RNA binding S1 [Burkholderia dolosa AUO158]
 gi|124894881|gb|EAY68761.1| RNA binding S1 [Burkholderia dolosa AUO158]
          Length = 841

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +  + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 711 REGVEKVSDLVPGM--LLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 768

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
            G       L     R +I L+M++ D+
Sbjct: 769 AGQVVKVKVLDVDVKRQRISLTMRLDDE 796


>gi|89053212|ref|YP_508663.1| 30S ribosomal protein S1 [Jannaschia sp. CCS1]
 gi|88862761|gb|ABD53638.1| SSU ribosomal protein S1P [Jannaschia sp. CCS1]
          Length = 558

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 7/79 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVK 673
           PE  ++ +G+V  + +FG FV   G  DG+VH+S L+ E   +  D++ E   GD V   
Sbjct: 366 PEGTQV-EGEVKNITEFGLFVGLEGEIDGMVHLSDLTWE--GRGEDMIGEFRKGDIVKAV 422

Query: 674 LLDFD-DRGKIKLSMKVVD 691
           + + D D+ +I LS+K VD
Sbjct: 423 VTEVDTDKERISLSIKAVD 441



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 280 LDTVHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 339

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 340 DTVKRRVSLGLKQTMRN 356



 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           + K+ +G VV      + ++GAFV   G  DGL+H++ ++  RV    +++  G+TV V+
Sbjct: 190 IGKLNEGDVVDGVVKNITEYGAFVDLGGV-DGLLHVTDMAWRRVNDPKEILTIGETVKVQ 248

Query: 674 LLDFD-DRGKIKLSMK 688
           ++  + +  +I L MK
Sbjct: 249 VIKVNKETHRISLGMK 264


>gi|121635173|ref|YP_975418.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|161870362|ref|YP_001599532.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|218768484|ref|YP_002342996.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|304387097|ref|ZP_07369348.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|21759416|sp|Q9JTN2|RNPH_NEIMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228298|sp|A1KUT9|RNPH_NEIMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043768|sp|A9M0T5|RNPH_NEIM0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120866879|emb|CAM10638.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|121052492|emb|CAM08831.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|161595915|gb|ABX73575.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|304338846|gb|EFM04949.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|308389647|gb|ADO31967.1| ribonuclease PH [Neisseria meningitidis alpha710]
 gi|319410733|emb|CBY91115.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis WUE 2594]
 gi|325132653|gb|EGC55339.1| ribonuclease PH [Neisseria meningitidis M6190]
 gi|325134681|gb|EGC57321.1| ribonuclease PH [Neisseria meningitidis M13399]
 gi|325138569|gb|EGC61132.1| ribonuclease PH [Neisseria meningitidis ES14902]
 gi|325198624|gb|ADY94080.1| ribonuclease PH [Neisseria meningitidis G2136]
 gi|325201806|gb|ADY97260.1| ribonuclease PH [Neisseria meningitidis M01-240149]
 gi|325205751|gb|ADZ01204.1| ribonuclease PH [Neisseria meningitidis M04-240196]
 gi|325208441|gb|ADZ03893.1| ribonuclease PH [Neisseria meningitidis NZ-05/33]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|265990396|ref|ZP_06102953.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1]
 gi|263001105|gb|EEZ13755.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1]
          Length = 499

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 103 GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 160

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G TV V+++  + +  +I L MK ++ +
Sbjct: 161 DMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQLESD 204


>gi|254673252|emb|CBA08277.1| ribonuclease PH [Neisseria meningitidis alpha275]
          Length = 261

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|153007374|ref|YP_001368589.1| 30S ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188]
 gi|151559262|gb|ABS12760.1| ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188]
          Length = 566

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILTIGQTVKVQIIRINQETHRISLGMKQLESD 271


>gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118]
 gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+  R +  +R +  Q G      GS L   G+T+ +   ++    +E+      G+ +
Sbjct: 5   LRVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASV----EEKVPAHKKGSGQ 60

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  RA+  V   +     T+ +  
Sbjct: 61  GWVTAEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  DA             PI   VA I++G+V    D   L
Sbjct: 121 DVLQADGGTRTAAITGAFVAAQDAVTQLLMQGKLQLSPIRDHVAAISVGIV----DGTPL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 177 LDLEYTEDSACDTDMNVVMTGAG 199


>gi|68536262|ref|YP_250967.1| putative transcriptional accessory protein [Corynebacterium
           jeikeium K411]
 gi|68263861|emb|CAI37349.1| putative transcriptional accessory protein [Corynebacterium
           jeikeium K411]
          Length = 756

 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I +I D+ +   + +G V  V  FGAFV     +DGLVH+S +S + V    DVV  G
Sbjct: 628 EGIETIKDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSEQFVKDPHDVVSSG 686

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           + V V+++D D  R +I LS+++ D+
Sbjct: 687 EVVKVRVVDVDVPRNRIGLSLRLQDE 712


>gi|308270373|emb|CBX26985.1| 30S ribosomal protein S1 [uncultured Desulfobacterium sp.]
          Length = 611

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           K+ +G V  + ++G FV   G  DGL+HI+ +S  R+   +++   GD + VK+L  D +
Sbjct: 244 KVSEGFVKNITEYGVFVDLGGV-DGLLHITDISWGRIKHPAEMFAVGDKIQVKILSIDKE 302

Query: 680 RGKIKLSMK 688
           + ++ L MK
Sbjct: 303 KERVSLGMK 311



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +G+V  + DFG FV      DGL+HIS +S T+R+   S++ K+GD +
Sbjct: 419 EGKVKNITDFGIFVGIDEGIDGLIHISDISWTKRIKHPSELYKKGDVI 466



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  V DFG FV      +GLVH+S++S E++         GD +  K+++ +    +I
Sbjct: 507 GTITNVTDFGIFVELEEGIEGLVHVSEISKEKIKTPVGKYNVGDGITAKVMNINSAERRI 566

Query: 684 KLSMKVV----DQN 693
            LS+K +    DQN
Sbjct: 567 GLSIKRLQMENDQN 580


>gi|58699609|ref|ZP_00374304.1| ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533874|gb|EAL58178.1| ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 148

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G  V+VK+L  
Sbjct: 66  VDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSI 125

Query: 678 D-DRGKIKLSMK 688
           D  + ++ LSMK
Sbjct: 126 DIAKSRMSLSMK 137


>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
 gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
          Length = 259

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 27/222 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  +  R ++ +VG++ +  GSS  + GD++  VVV +  +  E ++D+     + 
Sbjct: 23  RADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSR--VVVGVKIQPGEPFMDT---PDKG 77

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQTAQFPYTLR 424
             + +   +P A+      G P    I   R+  R +          +  ++ Q  + + 
Sbjct: 78  VIITNLELVPLAS-PTFETGPPREDAIELARVVDRGVRESEAIDLSKLCIESGQKVWMVF 136

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISK---------PVAGIAMGL--VKDGDDF 473
           I   + + DG+   A   G+  ALM A +P +K         P+  + +G+  VK G   
Sbjct: 137 IDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGLGEDAKLPLEDVPVGVTAVKIGSSI 196

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           I+  D S DE+++      V     G  A      +G ++ +
Sbjct: 197 IL--DPSLDEENVASCKLTVITNKEGALAGMQKSGVGTLTPD 236


>gi|219114931|ref|XP_002178261.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409996|gb|EEC49926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 284

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  +  +GAFV   G   GL+HISQ+S +R+     V++ G  V   ++D D   G+I
Sbjct: 194 GMVKALKPYGAFVE-VGGMSGLLHISQISYDRIDDLEKVLQPGMQVKCMIIDHDKVNGRI 252

Query: 684 KLSMKVVDQNTG 695
            LS K ++   G
Sbjct: 253 ALSTKTLEPEPG 264


>gi|166367132|ref|YP_001659405.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
 gi|166089505|dbj|BAG04213.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D D
Sbjct: 196 VGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLD 254

Query: 679 -DRGKIKLSMKVVDQNTG-----KPIV 699
            +RG+I LS K ++   G     +P+V
Sbjct: 255 AERGRISLSTKQLEPEPGDMLKNRPLV 281


>gi|167562568|ref|ZP_02355484.1| putative tex protein [Burkholderia oklahomensis EO147]
          Length = 774

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ V    +VVK 
Sbjct: 644 REGVEKVSDLTP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFVKDPHEVVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|499181|emb|CAA25357.1| unnamed protein product [Escherichia coli]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++D  +  A++ G+ +AL+DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADAWTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195


>gi|315224039|ref|ZP_07865880.1| YhgF like protein [Capnocytophaga ochracea F0287]
 gi|314946010|gb|EFS98018.1| YhgF like protein [Capnocytophaga ochracea F0287]
          Length = 707

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++  DV  +  I  G V  +  FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 628 VKTFDDV-RIGMILPGIVNNITAFGCFVDIGVKESGLVHISQLKEGYVSDVNEVVKLHQQ 686

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+++ D+ R +I L+M
Sbjct: 687 VQVKVIEKDEVRKRISLNM 705


>gi|260578962|ref|ZP_05846865.1| histidine triad domain-containing protein [Corynebacterium jeikeium
           ATCC 43734]
 gi|258602936|gb|EEW16210.1| histidine triad domain-containing protein [Corynebacterium jeikeium
           ATCC 43734]
          Length = 759

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I +I D+ +   + +G V  V  FGAFV     +DGLVH+S +S + V    DVV  G
Sbjct: 631 EGIETIKDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSEQFVKDPHDVVSSG 689

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           + V V+++D D  R +I LS+++ D+
Sbjct: 690 EVVKVRVVDVDVPRNRIGLSLRLQDE 715


>gi|126736966|ref|ZP_01752701.1| 30S ribosomal protein S1 [Roseobacter sp. SK209-2-6]
 gi|126721551|gb|EBA18254.1| 30S ribosomal protein S1 [Roseobacter sp. SK209-2-6]
          Length = 553

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGKLSEGDSV-DGVVKNITEYGAFVDLGGV-DGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++
Sbjct: 221 DMAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQED 264



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 334

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DGSKRRVSLGLKQTQRN 351



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + 
Sbjct: 361 PEGTEV-EGEVKNITEFGLFIGLEGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVSAVVS 419

Query: 676 DFD-DRGKIKLSMKVV 690
           + D D+ +I LS+K +
Sbjct: 420 EVDVDKERISLSIKAL 435


>gi|256043981|ref|ZP_05446896.1| 30S ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1]
          Length = 503

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 107 GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 164

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G TV V+++  + +  +I L MK ++ +
Sbjct: 165 DMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQLESD 208


>gi|15678292|ref|NP_275407.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621314|gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 184

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           PE+++I +G+V+++ +FGAFV   G  DGLVH+SQ++ + + 
Sbjct: 79  PELHEIVEGEVIEIAEFGAFVR-IGPVDGLVHVSQVTDDYIT 119


>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
          Length = 715

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIASSSLAEIEAAREMI 610
           + IP + +  VIG GG  +R + E++GA++++D+    GTV+I S    E+EAAR+ +
Sbjct: 84  IPIPGNMVAKVIGRGGSTVRQMREESGARIDVDNADGQGTVRI-SGGAREVEAARKAV 140


>gi|218528186|ref|YP_002419002.1| 30S ribosomal protein S1 [Methylobacterium chloromethanicum CM4]
 gi|218520489|gb|ACK81074.1| ribosomal protein S1 [Methylobacterium chloromethanicum CM4]
          Length = 570

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+ KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L
Sbjct: 285 PEEAKL-KGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQIL 343

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D  + +I L +K   QN
Sbjct: 344 EVDSVKRRISLGLKQTLQN 362



 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  
Sbjct: 200 EEGQVIDGVVKNITEYGAFVDLGGI-DGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKI 258

Query: 678 D-DRGKIKLSMK 688
           + +  +I L +K
Sbjct: 259 NHETHRISLGIK 270


>gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34]
 gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 35/209 (16%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--IHPVLPQTAQFPYTLRIVSE- 428
                 Y  LP AT         +RRE   G+   R   I  ++ ++ +    L+I+ E 
Sbjct: 57  GWVTAEYGMLPRATH------TRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQ 110

Query: 429 -------ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
                  + ++DG +  A++ G+ +AL+DA             P+   VA +++G+ K G
Sbjct: 111 MITVDCDVIQADGGTRTASITGAMVALVDAINYMLENGMIKKSPLKSMVAAVSVGIYK-G 169

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           +      D+   ED     D  V  T+ G
Sbjct: 170 EP---TCDLEYLEDSAAETDMNVVMTEEG 195


>gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4]
 gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4]
          Length = 258

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 16/200 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR+ + +R++    G  +   GS L   G+T+ +   ++     E      +G+  
Sbjct: 2   ARKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASV----TEGVPRWRAGSGL 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   A   R  G      RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPIS--------KPVAGIAMGLVKDGDDFIILSDI 479
           ++ ++DG +  A V G  +AL DA   +         +P++     +     D  +  D+
Sbjct: 118 DVIQADGGTRTAAVTGGYVALADAITWLGAANRLNDPQPLSSSVAAVSVGVVDGRVRLDL 177

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
             +ED    +D  V  TD+G
Sbjct: 178 PYEEDSRAEVDMNVVATDAG 197


>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
          Length = 248

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 99/210 (47%), Gaps = 28/210 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R ++ ++G+  R  GS+ + +G+T+ I V   G RE       ++  QR
Sbjct: 12  LRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTK-ITVAVYGPRE-------VASNQR 63

Query: 372 NDFMMH-YNFLPCATGEVSRMGA----PSRREIGH----GRLARRAIHPVLPQTAQFPYT 422
              M+H    + C   + +   A    P+R+          L ++A    + Q   FP +
Sbjct: 64  ---MLHDRAIVNCEYSQAAFSSATDRKPTRKSDKQSYEIASLIKQAFESTI-QITLFPRS 119

Query: 423 -LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  ++ ++DG    A +  ++LA++DAG+P+   +   +   ++     + L D++ 
Sbjct: 120 QIDIYVQVLQADGGLKAAALNAATLAVIDAGLPMRDFICACSATFIEG----VPLLDMNQ 175

Query: 482 DEDHLGHMD--FKVAGTDSGITAMQMDMKI 509
            E+  G  D    +     G+ ++ M+ K+
Sbjct: 176 MEERSGGADLLLSIQPQLGGVISLNMESKV 205


>gi|296109403|ref|YP_003616352.1| KH domain protein [Methanocaldococcus infernus ME]
 gi|295434217|gb|ADG13388.1| KH domain protein [Methanocaldococcus infernus ME]
          Length = 208

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++GE T  VEI+ +P D+I  +IG GG+V + I ++   K+ ID DGTV I S +  +  
Sbjct: 5   RVGEAT-NVEIIKVPKDRIGVLIGKGGEVKKRIEDELKVKIKIDADGTVTIYSKNNEDPL 63

Query: 605 A---AREMIRSI 613
           A   A++++++I
Sbjct: 64  ALWKAKDIVKAI 75


>gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
 gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 28/210 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR    +R+I+          GS L   G T+ +   ++     E     L G+ + 
Sbjct: 3   RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASV----SEGVPRFLRGSGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TG  SRM      G    R +   RL  R++  V+       YT+ + 
Sbjct: 59  WITAEYGMLPRSTG--SRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA--GV---------PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA  G+         P+++ VA +++G+ +     + 
Sbjct: 117 CDVIQADGGTRTASITGACVALVDALNGLQRDKALKTDPLNQLVASVSVGVYQG----VP 172

Query: 476 LSDISGDEDHLGHMDFKVA-GTDSGITAMQ 504
           + D+   ED     D  V  G D G+  +Q
Sbjct: 173 VLDLDYPEDSSADTDMNVVMGEDGGLIEVQ 202


>gi|325298000|ref|YP_004257917.1| Tex-like protein [Bacteroides salanitronis DSM 18170]
 gi|324317553|gb|ADY35444.1| Tex-like protein [Bacteroides salanitronis DSM 18170]
          Length = 710

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FG FV       GLVH+SQL+   V+  + VV     V V++L  D +R +I
Sbjct: 644 GIVTNITNFGCFVDIGIKEKGLVHVSQLAGHFVSDPTTVVSIHQQVRVRVLSVDRERKRI 703

Query: 684 KLSMK 688
           +L+MK
Sbjct: 704 QLTMK 708


>gi|159028923|emb|CAO87384.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++  G V  +  +GAF+   G   GL+HIS++S + +     V    D + V ++D D
Sbjct: 196 VGQVVIGSVRGIKPYGAFIDIGGV-SGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLD 254

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG+I LS K ++   G
Sbjct: 255 AERGRISLSTKQLEPEPG 272


>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR    +R I+   G  +   GS+L   G+T+ +   +      E     L G  +
Sbjct: 4   TREDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASF----TEGVPRWLKGEGK 59

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   +   R  G      RL  R++  V+        T+ +  
Sbjct: 60  GWVTAEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDC 119

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL DA               P+   V+ I++G++ DG   +
Sbjct: 120 DVLQADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGII-DGTPML 178

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED     D  V  T SG
Sbjct: 179 ---DLPYTEDVRAETDMNVVVTGSG 200


>gi|227538263|ref|ZP_03968312.1| transcription accessory protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241778|gb|EEI91793.1| transcription accessory protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 741

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV     +DGLVH+SQL+   V+   +VVK    V V + + D+ R +I
Sbjct: 637 GIVTNITNFGAFVDIGVHQDGLVHLSQLANRFVSDPHEVVKVQQQVMVTVTEVDEKRNRI 696

Query: 684 KLSMKVVDQNTGKP 697
            LSMK  +++  +P
Sbjct: 697 GLSMKTEEKSAPRP 710


>gi|319902565|ref|YP_004162293.1| Tex-like protein [Bacteroides helcogenes P 36-108]
 gi|319417596|gb|ADV44707.1| Tex-like protein [Bacteroides helcogenes P 36-108]
          Length = 713

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R+I D+ E  ++  G V  + +FGAFV      +GL+H+SQL+   ++  + VV     
Sbjct: 628 VRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLIHLSQLAERFISDPNKVVSIHQH 686

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ 692
           + VK+L  D  R +I+L++  V+Q
Sbjct: 687 LRVKVLSIDIARKRIQLTLIGVEQ 710


>gi|163849636|ref|YP_001637679.1| 30S ribosomal protein S1 [Methylobacterium extorquens PA1]
 gi|240136835|ref|YP_002961302.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens AM1]
 gi|254558710|ref|YP_003065805.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens DM4]
 gi|163661241|gb|ABY28608.1| ribosomal protein S1 [Methylobacterium extorquens PA1]
 gi|240006799|gb|ACS38025.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens AM1]
 gi|254265988|emb|CAX21738.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens DM4]
          Length = 570

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+ KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L
Sbjct: 285 PEEAKL-KGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQIL 343

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D  + +I L +K   QN
Sbjct: 344 EVDSVKRRISLGLKQTLQN 362



 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  
Sbjct: 200 EEGQVIDGVVKNITEYGAFVDLGGI-DGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKI 258

Query: 678 D-DRGKIKLSMK 688
           + +  +I L +K
Sbjct: 259 NHETHRISLGIK 270


>gi|19075390|ref|NP_587890.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces pombe 972h-]
 gi|74582568|sp|O74835|RRP5_SCHPO RecName: Full=rRNA biogenesis protein rrp5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein rrp5; Short=U3
            snoRNA-associated protein rrp5
 gi|3650378|emb|CAA21087.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces pombe]
          Length = 1690

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G+ V ID+D      S   ++I+ + E+ ++  D+  V     G VVKV D+G  +   G
Sbjct: 1199 GSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIA-VGSNLDGTVVKVGDYGVLIRIDG 1257

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              +  GL H S+++   V   S +   GD V   +LD D ++ +I L +K
Sbjct: 1258 TDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLK 1307


>gi|298369114|ref|ZP_06980432.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283117|gb|EFI24604.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 246

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++RDI      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 8   GRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASV----DENVPPFLRGKEQGWVT 63

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ +
Sbjct: 64  AEYGMLPASTATRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 432 SDGSSSMATVCGSSLAL 448
           +DG +  A++ G+ +AL
Sbjct: 124 ADGGTRTASITGAFVAL 140


>gi|295677344|ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002]
 gi|295437187|gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002]
          Length = 245

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR    +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MSNDTHRPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASV----SESVPPFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S   A   ++ G      RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 INLDCDVIQADGGTRTASITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D + + D+  DED     D  V  T +G
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAG 200


>gi|163737986|ref|ZP_02145402.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
 gi|161388602|gb|EDQ12955.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
          Length = 227

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +S + G  +   GS L   GDT  +   T+    +++    + G+        Y  L
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGLGWVTAEYGML 56

Query: 382 PCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT    R    MG    R +   RL  RA+   + + A     + I  ++ ++DG + 
Sbjct: 57  PRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTR 116

Query: 438 MATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
            A++ G  +A       LM  G     P+  PVA ++ G+
Sbjct: 117 CASITGGWVALRLAVNKLMKTGEVKIDPLVDPVAAVSCGI 156


>gi|71042114|pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From
           Pyrococcus Abyssi
          Length = 274

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGD 668
           R   + PE  +     V ++ ++GAF+       ++  +HIS++++  V    D +KEG 
Sbjct: 2   RRAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQ 61

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
            V  K++  D R G I LS++ V Q   K
Sbjct: 62  KVVAKVIRVDPRKGHIDLSLRRVTQQQRK 90


>gi|85060191|ref|YP_455893.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
 gi|123518740|sp|Q2NQT7|RNPH_SODGM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84780711|dbj|BAE75488.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
          Length = 239

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 19/171 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSVQQVRPVTITRHFTRHAEGSVLIAFGDTRVLCTASV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A   ++ G      RL  R++   +  T    YT+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLV 467
           ++ ++DG +  A++ G+ +AL DA             P+   VA I++G+V
Sbjct: 117 DVIQADGGTRTASITGACVALADALSSMQKKGQLKTNPMKGFVAAISVGIV 167


>gi|213962640|ref|ZP_03390901.1| S1 RNA binding domain protein [Capnocytophaga sputigena Capno]
 gi|213954635|gb|EEB65956.1| S1 RNA binding domain protein [Capnocytophaga sputigena Capno]
          Length = 707

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +++  DV  +  I  G V  +  FG FV       GLVHISQL    V+  ++VVK    
Sbjct: 628 VKTFDDV-RIGMILPGIVNNITAFGCFVDIGVKESGLVHISQLKDGYVSDVNEVVKLHQQ 686

Query: 670 VWVKLLDFDD-RGKIKLSM 687
           V VK+ + D+ R +I L+M
Sbjct: 687 VQVKVTEVDELRKRISLTM 705


>gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2]
          Length = 237

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ +   T+    +E     + G  +
Sbjct: 1   MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATV----EEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT    G  +  G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA       G+    P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTYMRSKGILKANPLKHMIAALSVGIYKG----TPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED +   D  +  T++G
Sbjct: 173 ADLEYTEDSVAETDMNIVMTETG 195


>gi|325128546|gb|EGC51419.1| ribonuclease PH [Neisseria meningitidis N1568]
 gi|325143439|gb|EGC65766.1| ribonuclease PH [Neisseria meningitidis M01-240013]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
          Length = 226

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 14/161 (8%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           KKV M+   S  +R+   +  LL R  GS+ F++GDT  +  V  G  E +     +S  
Sbjct: 8   KKVLMEAVGS-VLREYGCEQSLLSRPDGSATFLQGDTSVMAGV-YGPAEIK-----VSRE 60

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
             N   +     P       + G P+ +E    +L R     V+  +     ++ IV +I
Sbjct: 61  IHNKATLEVILRP-------KTGLPAIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQI 113

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
               GS     +  + + LMDAG+P+     G+   +  DG
Sbjct: 114 VSDAGSLLSCCLNAACMGLMDAGLPMRALFCGVTCAMDNDG 154


>gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
 gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R I+ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y+ LP +T           R+G  +  EI   RL  R++  V+   A    T+ +
Sbjct: 59  WVTAEYSMLPRSTNTRGDRESVKGRIGGRT-HEI--SRLIGRSLRAVIDYKALGENTIVL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V     
Sbjct: 116 DCDVLQADGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGG--- 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            + L D+  +ED     D  V  T  G
Sbjct: 173 -VPLLDLCYEEDVKADTDMNVVCTGDG 198


>gi|188579485|ref|YP_001922930.1| 30S ribosomal protein S1 [Methylobacterium populi BJ001]
 gi|179342983|gb|ACB78395.1| ribosomal protein S1 [Methylobacterium populi BJ001]
          Length = 570

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+ KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L
Sbjct: 285 PEGAKL-KGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQIL 343

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D  + +I L +K   QN
Sbjct: 344 EVDSVKRRISLGLKQTLQN 362



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  
Sbjct: 200 EEGQVIDGVVKNITEYGAFVDLGGI-DGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKI 258

Query: 678 D-DRGKIKLSMK 688
           + +  +I L +K
Sbjct: 259 NHETHRISLGIK 270


>gi|284048932|ref|YP_003399271.1| RNA binding S1 domain protein [Acidaminococcus fermentans DSM
           20731]
 gi|283953153|gb|ADB47956.1| RNA binding S1 domain protein [Acidaminococcus fermentans DSM
           20731]
          Length = 162

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 42/73 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + +FGAFV     + GL+HIS++S   V    D +K  D V VK++  
Sbjct: 4   EKGAVVDGIVTGITNFGAFVSLPENKVGLIHISEVSNVFVKDVHDFLKVKDKVTVKVVSI 63

Query: 678 DDRGKIKLSMKVV 690
           DD+GKI LS+K +
Sbjct: 64  DDKGKIGLSLKAL 76


>gi|298345213|ref|YP_003717900.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304390773|ref|ZP_07372725.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235274|gb|ADI66406.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304325656|gb|EFL92902.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 257

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M ++  R DGR  + +R+++  +  +    G  L   G+T+ +   +L         DS 
Sbjct: 1   MTERIERADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSG 60

Query: 367 SGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT       S  G  S R     RL  RA+   +   A    T
Sbjct: 61  FGW----VTAEYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +AL  A           G P    V  I++G++    
Sbjct: 117 IAIDCDVLQADGGTRTASITGAWIALQRAIAVGRDSGFIPGNPTRDSVCAISVGII---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D I   D+  +ED     D  V  T SG
Sbjct: 173 DSIPRLDLPYEEDSRAETDMNVVMTGSG 200


>gi|205374682|ref|ZP_03227476.1| general stress protein 13 [Bacillus coahuilensis m4-4]
          Length = 103

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 6   EVGNVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDVNEHLKIGDEVSVKVLAV 65

Query: 678 DDRGK 682
           +  GK
Sbjct: 66  EAEGK 70


>gi|13541317|ref|NP_111005.1| DNA-directed RNA polymerase subunit E' [Thermoplasma volcanium
           GSS1]
          Length = 192

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           PE+ +I  G+VV V  FGAFV F  + +GL+HISQ+  +R+
Sbjct: 89  PEMQEIVDGEVVSVQKFGAFVKFS-SFEGLLHISQIMDDRI 128


>gi|300711176|ref|YP_003736990.1| hypothetical protein HacjB3_09075 [Halalkalicoccus jeotgali B3]
 gi|299124859|gb|ADJ15198.1| hypothetical protein HacjB3_09075 [Halalkalicoccus jeotgali B3]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + Y+G V    DFG FV    +  GL+H S+L  +R  ++ D   EGDTV+V++    D
Sbjct: 38  GRFYQGTVDGFADFGVFVDIGDSVTGLLHRSEL--DRRLESLD-WDEGDTVYVQVTGVQD 94

Query: 680 RGKIKLSMKV 689
            G + LS  +
Sbjct: 95  NGNVDLSWSI 104


>gi|299116642|emb|CBN76266.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 985

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 11/81 (13%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           PE+  IY G V K           G R +GLVH+SQ+    +   S VVK G    VK++
Sbjct: 321 PELYGIYDGSVSKA---------NGKRQEGLVHVSQIQNGMLRDPSKVVKRGQNCKVKVI 371

Query: 676 DFDDRGKIKLSMKVVDQNTGK 696
                 ++ LS+K VDQ TG+
Sbjct: 372 SMAG-ARLSLSIKEVDQATGE 391


>gi|13474344|ref|NP_105912.1| 30S ribosomal protein S1 [Mesorhizobium loti MAFF303099]
 gi|14025097|dbj|BAB51698.1| ribosomal protein S1 [Mesorhizobium loti MAFF303099]
          Length = 565

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   +
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPT 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQTVKVQIIRINQETHRISLGMKQLESD 271


>gi|302815257|ref|XP_002989310.1| hypothetical protein SELMODRAFT_427936 [Selaginella moellendorffii]
 gi|300142888|gb|EFJ09584.1| hypothetical protein SELMODRAFT_427936 [Selaginella moellendorffii]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           K+  G V  +M FGAF+      DGL+HIS++S   V    DV+  G  V V++   D
Sbjct: 85  KVLTGSVKAIMTFGAFIDLDARFDGLLHISKISDRFVQNVEDVLTVGQQVQVEIESVD 142


>gi|256962096|ref|ZP_05566267.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|293383118|ref|ZP_06629035.1| protein YhgF [Enterococcus faecalis R712]
 gi|293387729|ref|ZP_06632274.1| protein YhgF [Enterococcus faecalis S613]
 gi|312907293|ref|ZP_07766284.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|312909911|ref|ZP_07768759.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
 gi|256952592|gb|EEU69224.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|291079457|gb|EFE16821.1| protein YhgF [Enterococcus faecalis R712]
 gi|291082918|gb|EFE19881.1| protein YhgF [Enterococcus faecalis S613]
 gi|310626321|gb|EFQ09604.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|311289869|gb|EFQ68425.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
 gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
          Length = 245

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGE-------VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                Y  LP AT           R+G  +  EI   RL  R++  V+   A    T+ +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGRIGGRT-HEI--SRLIGRSLRAVIDYKALGENTVVL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V     
Sbjct: 116 DCDVLQADGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGG--- 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
            + L D+  +ED     D  V  T  G
Sbjct: 173 -VPLLDLRYEEDVKADTDMNVVCTGDG 198


>gi|154246172|ref|YP_001417130.1| 30S ribosomal protein S1 [Xanthobacter autotrophicus Py2]
 gi|154160257|gb|ABS67473.1| ribosomal protein S1 [Xanthobacter autotrophicus Py2]
          Length = 571

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  +
Sbjct: 286 FKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDSAK 345

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 346 RRISLGLKQTLQN 358



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  + +  +I
Sbjct: 203 GVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEVLNIGQTVKVKIIKINHETHRI 261

Query: 684 KLSMK 688
            L MK
Sbjct: 262 SLGMK 266


>gi|222147725|ref|YP_002548682.1| hypothetical protein Avi_0962 [Agrobacterium vitis S4]
 gi|221734713|gb|ACM35676.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 770

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G
Sbjct: 643 VEEITDL-KPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEVVKAG 699


>gi|257085428|ref|ZP_05579789.1| RNA binding protein S1 [Enterococcus faecalis Fly1]
 gi|256993458|gb|EEU80760.1| RNA binding protein S1 [Enterococcus faecalis Fly1]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|229550202|ref|ZP_04438927.1| S1 domain RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|257422802|ref|ZP_05599792.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|307277561|ref|ZP_07558653.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|312952309|ref|ZP_07771184.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|229304640|gb|EEN70636.1| S1 domain RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|257164626|gb|EEU94586.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|306505826|gb|EFM75004.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|310629693|gb|EFQ12976.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|315153272|gb|EFT97288.1| S1 RNA binding domain protein [Enterococcus faecalis TX0031]
 gi|315155950|gb|EFT99966.1| S1 RNA binding domain protein [Enterococcus faecalis TX0043]
 gi|315157882|gb|EFU01899.1| S1 RNA binding domain protein [Enterococcus faecalis TX0312]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
           carolinensis]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M  ++ + D  D  ++R I  + GLL R  GS+ +++GDT  +  V  G  E +     +
Sbjct: 1   METEQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGV-YGPSEVK-----V 54

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S    +   +     P       ++G P   E    ++ ++    V+  T     ++ IV
Sbjct: 55  SKEIYDKATLEVMLRP-------KVGLPGVYERSREQMIKKTCEAVVLGTLHPRSSITIV 107

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            ++    GS   + +  + + LMDAG+P+     G+   L  DG+
Sbjct: 108 LQVITDAGSLLASCLNAACMGLMDAGLPMGSLFCGVTCALDADGN 152


>gi|320354873|ref|YP_004196212.1| 30S ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
 gi|320123375|gb|ADW18921.1| SSU ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
          Length = 363

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV--KLLDFDDRGK 682
           G+V  + +FGAFV   G  DGL+ +S+L+  +  K  DV++ G  V V  K LD+ D+ +
Sbjct: 172 GEVTSIREFGAFVDIGGI-DGLIPLSELAWGQTDKVEDVLQRGQQVEVIIKRLDW-DKDR 229

Query: 683 IKLSMK 688
           I LS++
Sbjct: 230 ISLSLR 235



 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDT 669
           +++T  P +  +++G+V ++  FGAFV      DGL+HIS+L    R+    +V++ G  
Sbjct: 244 KALTQYP-IGSVHQGKVSRLAAFGAFVTLEPGIDGLLHISKLGGGRRIHHPREVLEAGQE 302

Query: 670 VWVKLLDFD 678
           + VK+   D
Sbjct: 303 LTVKIESID 311


>gi|255972979|ref|ZP_05423565.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255963997|gb|EET96473.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V        V +  TVWV+ +D   +G
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDL-KKG 716

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 717 RISLTM 722


>gi|284035601|ref|YP_003385531.1| Tex-like protein protein-like protein [Spirosoma linguale DSM 74]
 gi|283814894|gb|ADB36732.1| Tex-like protein protein-like protein [Spirosoma linguale DSM 74]
          Length = 713

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R++ D+ E   +  G V  +  FGAFV     +DGLVHISQL+   V+  + VVK    
Sbjct: 633 VRTVDDLHE-GMVLPGVVTNITAFGAFVDIGVKQDGLVHISQLANHFVSDPNTVVKVYQK 691

Query: 670 VWVKLLDFDD-RGKIKLSMKV 689
           V VK+++ D  R +I LSMK+
Sbjct: 692 VKVKVMEVDKARKRIALSMKI 712


>gi|157964776|ref|YP_001499600.1| ribonuclease PH [Rickettsia massiliae MTU5]
 gi|157844552|gb|ABV85053.1| Ribonuclease PH [Rickettsia massiliae MTU5]
          Length = 250

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 12  MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCET----TVPPFLRGQNQ 67

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +  A   ++ G      RL  RA+  V+         + I  
Sbjct: 68  GWITAEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDC 127

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGD--DFI 474
           ++  +DG +  A + GS +A       LM   V    P+   +A I+ G+ K     D  
Sbjct: 128 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYKGEAILDLD 187

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
            L D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +   
Sbjct: 188 YLEDSDADVDS----NFVFAG-NGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKL 242

Query: 535 MSKVLSES 542
            ++VL ES
Sbjct: 243 QNQVLLES 250


>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
           troglodytes]
          Length = 235

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+   L  D D  ++L   S  E
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCAL--DSDGTLVLDPTSKQE 174


>gi|302798376|ref|XP_002980948.1| hypothetical protein SELMODRAFT_420490 [Selaginella moellendorffii]
 gi|300151487|gb|EFJ18133.1| hypothetical protein SELMODRAFT_420490 [Selaginella moellendorffii]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           K+  G V  +M FGAF+      DGL+HIS++S   V    DV+  G  V V++   D
Sbjct: 85  KVLTGSVKAIMTFGAFIDLDARFDGLLHISKISDRFVQNVEDVLTVGQQVQVEIESVD 142


>gi|260462840|ref|ZP_05811045.1| ribosomal protein S1 [Mesorhizobium opportunistum WSM2075]
 gi|259031484|gb|EEW32755.1| ribosomal protein S1 [Mesorhizobium opportunistum WSM2075]
          Length = 565

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   +
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPT 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQTVKVQIIRINQETHRISLGMKQLESD 271



 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G+V    +FG F+   G  DG+VH+S L   R  +   V++E   GD V  ++LD D D
Sbjct: 374 EGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWTRPGE--QVIEEYNRGDMVKAQVLDVDID 431

Query: 680 RGKIKLSMKVVDQNT 694
           + +I L +K + ++T
Sbjct: 432 KERISLGIKQLAKDT 446


>gi|157412946|ref|YP_001483812.1| ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
 gi|157387521|gb|ABV50226.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S  L   E    ++  +T++ E+ ++ +G+V+ V  +G F+   GA  GL+H S L+   
Sbjct: 272 SRKLVLSEKKASLVSKLTNL-ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTNGS 329

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +    +V +EG+ +   + + D ++G+I L+  +++ + G+ I+
Sbjct: 330 IRSLREVFREGEMIKALISEIDLEKGRIGLNTALLENSAGELII 373


>gi|197117381|ref|YP_002137808.1| 30S ribosomal protein S1 [Geobacter bemidjiensis Bem]
 gi|197086741|gb|ACH38012.1| RNA-binding S1 domain protein [Geobacter bemidjiensis Bem]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V ++  FGAFV      DGL+HIS+L   +R+    +V+ EG  V VK+   D ++ +
Sbjct: 295 GKVARLTPFGAFVTLGSGVDGLIHISKLGAGKRIQHPREVLAEGQEVEVKVEGVDREQRR 354

Query: 683 IKLSMKVVDQ 692
           I LS+  V +
Sbjct: 355 ISLSLASVSR 364



 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++ +   V +  KG V  + DFGAFV   GA +GL+ +S+++  RV   SDV+  G  V 
Sbjct: 197 ALKETLNVGQRVKGTVTSLRDFGAFVS-IGAVEGLLPVSEVAWARVNHVSDVLTVGQEVE 255

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V +   D ++ +I  S+K
Sbjct: 256 VVVKGIDWEKNRISFSLK 273


>gi|319780059|ref|YP_004139535.1| ribosomal protein S1 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165947|gb|ADV09485.1| ribosomal protein S1 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 565

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   +
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPT 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQTVKVQIIRINQETHRISLGMKQLESD 271



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G+V    +FG F+   G  DG+VH+S L   R  +   V++E   GD V  ++LD D D
Sbjct: 374 EGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWTRPGE--QVIEEYNRGDMVKAQVLDVDID 431

Query: 680 RGKIKLSMKVVDQNT 694
           + +I L +K + ++T
Sbjct: 432 KERISLGIKQLAKDT 446


>gi|168030832|ref|XP_001767926.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680768|gb|EDQ67201.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 299

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 622 IYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           +Y+G+V  V DFGAFV         +  GLV  S+LS   V    D+ + G +V VK+L 
Sbjct: 108 VYEGKVNSVTDFGAFVDVVLPDGTSSVRGLVRTSELSWNPVRNPRDICEIGQSVRVKILQ 167

Query: 677 FD-DRGKIKLSMK 688
            D ++  + LS+K
Sbjct: 168 LDKEKSHLYLSIK 180


>gi|149278329|ref|ZP_01884467.1| S1 RNA-binding domain protein [Pedobacter sp. BAL39]
 gi|149231095|gb|EDM36476.1| S1 RNA-binding domain protein [Pedobacter sp. BAL39]
          Length = 782

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK-EGDTVWVKLLDFDDRGKI 683
           G V  + +FGAFV     +DGLVH SQL+   VA  +DVVK         +     R +I
Sbjct: 642 GIVTNITNFGAFVDIGVHQDGLVHTSQLADRFVANPNDVVKVHQKVEVTVVEVDVARKRI 701

Query: 684 KLSMKV 689
            LSMK 
Sbjct: 702 SLSMKT 707


>gi|86136032|ref|ZP_01054611.1| ribosomal protein S1 [Roseobacter sp. MED193]
 gi|85826906|gb|EAQ47102.1| ribosomal protein S1 [Roseobacter sp. MED193]
          Length = 552

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGKLSEGDSV-DGVVKNITEYGAFVDLGGV-DGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++
Sbjct: 221 DMAWRRVNHPSEILAIGETVKVQVIKINKDTHRISLGMKQLQED 264



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 334

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DGSKRRVSLGLKQTQRN 351


>gi|329766743|ref|ZP_08258286.1| RNA-binding S1 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136998|gb|EGG41291.1| RNA-binding S1 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 265

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVHISQLSTERVAKTSDVVK 665
           M   + ++PE  +I    + KVMD GA+V    + G + G +HIS+++   +   S  VK
Sbjct: 1   MSTEVQEMPEQGEIVLATITKVMDHGAYVTLDEYNGIQ-GFLHISEIAPGWIRSVSKFVK 59

Query: 666 EGD--TVWVKLLDFDDRGKIKLSMKVVDQN 693
           +G+   + VK ++  DRG I LS+K V ++
Sbjct: 60  DGEKKVLLVKKVN-QDRGDIDLSLKQVSKD 88


>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
 gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
          Length = 243

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 25/205 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR    +R I+   G  +   GS+L   G+T+ +   +      E     L G  +
Sbjct: 4   TREDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASF----TEGVPRWLKGEGK 59

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   +   R  G      RL  R++  V+        T+ +  
Sbjct: 60  GWVTAEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDC 119

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL DA               P+   V+ I++G++ DG   +
Sbjct: 120 DVLQADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGII-DGTPML 178

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D+   ED     D  V  T SG
Sbjct: 179 ---DLPYTEDVRAETDMNVVVTGSG 200


>gi|326559598|gb|EGE10012.1| ribonuclease PH [Moraxella catarrhalis 7169]
 gi|326567722|gb|EGE17828.1| ribonuclease PH [Moraxella catarrhalis BC1]
          Length = 238

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R I       +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASI----EAGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++  A   ++ G      RL  R++  +L  +     T+ I  
Sbjct: 57  GWLTAEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+++AL+DA
Sbjct: 117 DVIQADGGTRTASISGAAVALIDA 140


>gi|315655635|ref|ZP_07908533.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315489699|gb|EFU79326.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 257

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M ++  R DGR  + +R+++  +  +    G  L   G+T+ +   +L         DS 
Sbjct: 1   MTERIERADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSG 60

Query: 367 SGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT       S  G  S R     RL  RA+   +   A    T
Sbjct: 61  LGW----VTAEYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +AL  A           G P    V  I++G++    
Sbjct: 117 IAIDCDVLQADGGTRTASITGAWIALQRAIAVGRDSGFIPGNPTRDSVCAISVGII---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D I   D+  +ED     D  V  T SG
Sbjct: 173 DSIPRLDLPYEEDSRAETDMNVVMTGSG 200


>gi|289621121|emb|CBI51904.1| unnamed protein product [Sordaria macrospora]
          Length = 1776

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 610  IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEG 667
            + +I+D+ E   I  G+V KV +FGAF+   G+ +  GL H S++S + V     + +EG
Sbjct: 1279 LTTISDLKEGQTIT-GRVRKVEEFGAFIDIDGSDNLSGLCHRSEMSDKAVKDARKLYEEG 1337

Query: 668  DTVWVKLLDFDDRGK-IKLSMK 688
            D V  K+L  D   K I L +K
Sbjct: 1338 DKVKAKVLKVDATAKRINLGLK 1359


>gi|14324700|dbj|BAB59627.1| DNA-directed RNA polymerase E' [Thermoplasma volcanium GSS1]
          Length = 195

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           PE+ +I  G+VV V  FGAFV F  + +GL+HISQ+  +R+
Sbjct: 92  PEMQEIVDGEVVSVQKFGAFVKFS-SFEGLLHISQIMDDRI 131


>gi|282858144|ref|ZP_06267339.1| S1 RNA binding domain protein [Pyramidobacter piscolens W5455]
 gi|282584066|gb|EFB89439.1| S1 RNA binding domain protein [Pyramidobacter piscolens W5455]
          Length = 719

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +R +TD+    K+  G V  V  FGAFV+    +DGLVH+SQ+    V   S V+  G  
Sbjct: 629 VRELTDLEPGMKL-PGIVSNVTAFGAFVNIGVHQDGLVHVSQMG-RYVKDISTVLHPGMA 686

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V ++D D  R +I L M++
Sbjct: 687 VEVYVIDVDVKRRRISLRMEL 707


>gi|116207588|ref|XP_001229603.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
 gi|88183684|gb|EAQ91152.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
          Length = 1766

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 610  IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEG 667
            + +I D+ E   I  G+V KV +FGAF+   G+ +  GL H S+++   V     +  EG
Sbjct: 1260 LTTIADLKEGQTIT-GKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNVKDARTLYNEG 1318

Query: 668  DTVWVKLLDFD-DRGKIKLSMK 688
            D V  ++L  D ++ +I L +K
Sbjct: 1319 DRVKARVLKVDLEKKRINLGLK 1340


>gi|326573864|gb|EGE23817.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           O35E]
          Length = 38

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 28/37 (75%)

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           ERV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 2   ERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 38


>gi|110635932|ref|YP_676140.1| 30S ribosomal protein S1 [Mesorhizobium sp. BNC1]
 gi|110286916|gb|ABG64975.1| SSU ribosomal protein S1P [Chelativorans sp. BNC1]
          Length = 569

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   +
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPT 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G TV V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQTVKVQIIRINQETHRISLGMKQLESD 271



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLL 675
           V  + +G+V    +FG F+   G  DG+VH+S L   R  +   V++E   GD V  ++L
Sbjct: 369 VGSVVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWSRPGEQ--VIEEYNRGDMVKAQVL 426

Query: 676 DFD-DRGKIKLSMK 688
           D D ++ +I L +K
Sbjct: 427 DVDIEKERISLGIK 440


>gi|327538498|gb|EGF25162.1| transcriptional accessory protein [Rhodopirellula baltica WH47]
          Length = 711

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++S+ D+ E   + +G +  V  FGAF+     +DGL+H+SQL+ + V+  S+VV  GD 
Sbjct: 630 VQSMEDLRE-GMVLEGVITNVTHFGAFIDLGVHQDGLIHVSQLANQFVSDPSEVVSVGDV 688

Query: 670 VWVKLLDFD-DRGKIKLSMKVV 690
           V VK+L+ D DR +I +S K +
Sbjct: 689 VKVKVLEIDLDRKRIAVSKKAL 710


>gi|161525573|ref|YP_001580585.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189349699|ref|YP_001945327.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|226736894|sp|A9AEQ7|RNPH_BURM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|160343002|gb|ABX16088.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189333721|dbj|BAG42791.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
          Length = 246

 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   +   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ +  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  DA             PI   VA I++G V +G   +   
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLLAAGKLERSPIVDHVAAISVG-VYEGTPVL--- 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T +G
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAG 200


>gi|167836414|ref|ZP_02463297.1| transcription accessory protein, TEX [Burkholderia thailandensis
           MSMB43]
          Length = 740

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|56695704|ref|YP_166055.1| 30S ribosomal protein S1 [Ruegeria pomeroyi DSS-3]
 gi|56677441|gb|AAV94107.1| ribosomal protein S1 [Ruegeria pomeroyi DSS-3]
          Length = 558

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEESRAEQRAEVIGNLTE-GQTVDGVVKNITEYGAFVDLGGV-DGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   ++++  G+TV V+++  + D  +I L MK + ++
Sbjct: 226 DMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISLGMKQLQED 269



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + + D D
Sbjct: 370 VVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVKAVVSEVDID 429

Query: 680 RGKIKLSMKVV 690
           + +I LS+K V
Sbjct: 430 KERISLSIKSV 440



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 283 VHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGA 342

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 343 KRRVSLGLKQTMRN 356


>gi|221212785|ref|ZP_03585761.1| putative tex protein [Burkholderia multivorans CGD1]
 gi|221166998|gb|EED99468.1| putative tex protein [Burkholderia multivorans CGD1]
          Length = 774

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 644 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 701

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
            G       L     R +I L+M++ D+
Sbjct: 702 AGQVVKVKVLDVDVKRQRISLTMRLDDE 729


>gi|166157063|emb|CAO79520.1| 30S ribosomal protein S1 [uncultured candidate division WWE3
           bacterium EJ0ADIGA11YD11]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G V  +M FG FV   G  +GLVHIS+++ E+V+  S+  K G  + V +L  D+   K+
Sbjct: 224 GIVTGIMPFGVFVDLDGV-EGLVHISEIAWEKVSHPSNYFKVGQKIKVMVLGVDEESNKL 282

Query: 684 KLSMK 688
            LS+K
Sbjct: 283 ALSVK 287


>gi|260584869|ref|ZP_05852614.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
          ATCC 700633]
 gi|260157526|gb|EEW92597.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
          ATCC 700633]
          Length = 51

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 8  EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD 52
          +  +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + + +
Sbjct: 7  QTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMAN 51


>gi|32472440|ref|NP_865434.1| RNA binding protein [Rhodopirellula baltica SH 1]
 gi|32443676|emb|CAD73118.1| conserved hypothetical protein-putative RNA binding protein
           [Rhodopirellula baltica SH 1]
          Length = 750

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++S+ D+ E   + +G +  V  FGAF+     +DGL+H+SQL+ + V+  S+VV  GD 
Sbjct: 669 VQSMEDLRE-GMVLEGVITNVTHFGAFIDLGVHQDGLIHVSQLANQFVSDPSEVVSVGDV 727

Query: 670 VWVKLLDFD-DRGKIKLSMKVV 690
           V VK+L+ D DR +I +S K +
Sbjct: 728 VKVKVLEIDLDRKRIAVSKKAL 749


>gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97]
 gi|59798839|sp|Q7U076|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium bovis AF2122/97]
          Length = 259

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +    G  +   GS L   G T+ +   ++     E        T   
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASV----TEGVPRWRKATGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ I  +
Sbjct: 60  WLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 VDLPYEEDSRAEVDMNVVATDTG 198


>gi|304310165|ref|YP_003809763.1| Ribonuclease PH [gamma proteobacterium HdN1]
 gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1]
          Length = 238

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R I+          GS L   G+T+ I   +      E     L GT R
Sbjct: 1   MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTAS----ATEGVPRFLKGTGR 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E SR G    R +   RL  R++   +        T+ + 
Sbjct: 57  GWVTAEYGMLPRSTHDRMDREASR-GKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G  +AL+DA       G     P+ + +A +++G+ K     + 
Sbjct: 116 CDVIQADGGTRTASITGGCVALVDALSFLLKKGTIKQDPLQRLIASVSVGIYKG----VP 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T  G
Sbjct: 172 VLDLDYPEDSKAETDMNVVMTQHG 195


>gi|223984133|ref|ZP_03634285.1| hypothetical protein HOLDEFILI_01577 [Holdemania filiformis DSM
           12042]
 gi|223963927|gb|EEF68287.1| hypothetical protein HOLDEFILI_01577 [Holdemania filiformis DSM
           12042]
          Length = 121

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I +G +  +  +GAFV       GL+HIS++S   V   +  V   D V VK++DF
Sbjct: 4   QIGQIVEGTITGIQPYGAFVSLDEETSGLIHISEISEGFVKDVNHFVHVHDRVKVKIIDF 63

Query: 678 DD-RGKIKLSMKVV 690
           D    + +LS+K +
Sbjct: 64  DKATHQARLSLKAL 77


>gi|222153501|ref|YP_002562678.1| hypothetical protein SUB1380 [Streptococcus uberis 0140J]
 gi|222114314|emb|CAR42987.1| putative S1 RNA binding domain protein [Streptococcus uberis 0140J]
          Length = 118

 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G +  +  +GAFV       GL+HIS++ T  V   ++++K G  V V+++D+D+   K 
Sbjct: 9   GTITGIKTYGAFVALENNTTGLIHISEIKTGYVDNINNLLKVGQKVLVQVVDYDEYNQKA 68

Query: 684 KLSMKVVD 691
            LS++ ++
Sbjct: 69  SLSLRTLE 76


>gi|253701864|ref|YP_003023053.1| 30S ribosomal protein S1 [Geobacter sp. M21]
 gi|251776714|gb|ACT19295.1| RNA binding S1 domain protein [Geobacter sp. M21]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V ++  FGAFV      DGL+HIS+L   +R+    +V+ EG  V VK+   D ++ +
Sbjct: 295 GKVARLTPFGAFVTLGSGVDGLIHISKLGAGKRIQHPREVLAEGQEVEVKVEGVDREQRR 354

Query: 683 IKLSMKVVDQ 692
           I LS+  V +
Sbjct: 355 ISLSLASVSR 364



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++ +  +V +  KG V  + DFGAFV   GA +GL+ +S+++  RV   SDV+  G  V 
Sbjct: 197 ALKETLKVGQRVKGTVTSLRDFGAFVS-IGAVEGLLPVSEVAWARVNHVSDVLTVGQEVE 255

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V +   D ++ +I  S+K
Sbjct: 256 VVVKGIDWEKDRISFSLK 273


>gi|34763707|ref|ZP_00144630.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain)
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27886535|gb|EAA23776.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain)
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 359

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + + + D D DRG+
Sbjct: 293 EGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKITIKDVDKDRGR 352

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 353 VGLTRK 358


>gi|313203212|ref|YP_004041869.1| tex-like protein [Paludibacter propionicigenes WB4]
 gi|312442528|gb|ADQ78884.1| Tex-like protein [Paludibacter propionicigenes WB4]
          Length = 713

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV      +GLVHIS +S + ++  +DVV     V V++L+ D  R ++
Sbjct: 649 GIVTNITNFGAFVDIGIKENGLVHISNMSDKFISNPADVVSVHQHVKVRVLEVDAVRKRV 708

Query: 684 KLSM 687
           +L +
Sbjct: 709 QLKL 712


>gi|189350594|ref|YP_001946222.1| transcription accessory protein [Burkholderia multivorans ATCC
           17616]
 gi|189334616|dbj|BAG43686.1| transcription accessory protein [Burkholderia multivorans ATCC
           17616]
          Length = 774

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 644 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 701

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
            G       L     R +I L+M++ D+
Sbjct: 702 AGQVVKVKVLDVDVKRQRISLTMRLDDE 729


>gi|88802812|ref|ZP_01118339.1| putative RNA binding protein with S1 RNA-binding domain
           [Polaribacter irgensii 23-P]
 gi|88781670|gb|EAR12848.1| putative RNA binding protein with S1 RNA-binding domain
           [Polaribacter irgensii 23-P]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           ++A++ +    I++I D+  + ++  G V  + +FG FV       GL+H+S LS   V 
Sbjct: 594 AIAKVFSFDATIKTIADL-RIGQVLPGIVNNITNFGCFVDIGTKESGLIHVSNLSNTFVK 652

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
             + +V     + VK+L+ D  R +I+L++
Sbjct: 653 DVNAIVTLQQQIMVKVLEVDLPRKRIQLAL 682


>gi|86136764|ref|ZP_01055342.1| ribonuclease PH [Roseobacter sp. MED193]
 gi|85826088|gb|EAQ46285.1| ribonuclease PH [Roseobacter sp. MED193]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQ 370
           +R   R+   +R +S + G  +   GS L   G+T  +   +L     E  V S + G+ 
Sbjct: 1   MRPSNRELNEMRSVSIETGFTKHAEGSCLIKMGETHVLCTASL-----EPRVPSFIKGSG 55

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT    R  A + ++ G      RL  RA+   + + A     + I 
Sbjct: 56  LGWVTAEYGMLPRATNTRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITID 115

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
            ++ ++DG +  A + G  +A       LM AG     P+  PV+ I+ G+
Sbjct: 116 CDVLQADGGTRCAAITGGWVALRLAVNKLMKAGEVKIDPLMDPVSAISCGI 166


>gi|260891262|ref|ZP_05902525.1| protein YhgF [Leptotrichia hofstadii F0254]
 gi|260859289|gb|EEX73789.1| protein YhgF [Leptotrichia hofstadii F0254]
          Length = 488

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV      D L+HIS+++ + V+  +  +  G  + VK+L  D +R
Sbjct: 419 VLEGTVRNVAKFGAFVDIGLKNDALIHISEIAEKFVSDATKELSVGQIIKVKILSLDKER 478

Query: 681 GKIKLSMK 688
           G++ L+ K
Sbjct: 479 GRVGLTRK 486


>gi|224146056|ref|XP_002325863.1| predicted protein [Populus trichocarpa]
 gi|222862738|gb|EEF00245.1| predicted protein [Populus trichocarpa]
          Length = 145

 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GL HIS+L++  + K  DV K GD V VKL+  +++G+++LS K +
Sbjct: 1   GLCHISELTSNWLPKAEDVFKVGDRVDVKLIKVNEKGQLRLSRKAL 46


>gi|119513349|ref|ZP_01632384.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
 gi|119461989|gb|EAW42991.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++N++ +G+V  +  FG FV   G    L+HI Q+S + +     V + G T+   ++D 
Sbjct: 181 QLNQLVEGRVTGIKPFGIFVDLDGL-SALLHIKQVSQKYIESLEKVFQIGQTIKAVIIDL 239

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           D+ +G++ +S +V++   G+
Sbjct: 240 DEGKGRVAISTRVLENFPGE 259


>gi|90420650|ref|ZP_01228556.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
 gi|90334941|gb|EAS48702.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
          Length = 241

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S +    +   GS L   GDT  +   +L    +E+    L  + +
Sbjct: 1   MRPSKRAFDELRPVSLERNYSRHAEGSCLVRFGDTHVLCTASL----EERVPGWLKNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+  R  A S ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGDRMRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD 450
           ++ ++DG +  A + G  +AL D
Sbjct: 117 DVIQADGGTRTAAITGGYVALAD 139


>gi|313668116|ref|YP_004048400.1| ribonuclease PH [Neisseria lactamica ST-640]
 gi|313005578|emb|CBN87014.1| ribonuclease PH [Neisseria lactamica 020-06]
          Length = 242

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 20/142 (14%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPYTLRIV 426
            Y  LP +T   SRM    RRE   G          RL  R++  V+         + I 
Sbjct: 65  EYGMLPAST--ASRM----RREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILID 118

Query: 427 SEITESDGSSSMATVCGSSLAL 448
            ++ ++DG +  A++ G+ +AL
Sbjct: 119 CDVIQADGGTRTASITGAFVAL 140


>gi|34784958|gb|AAH57030.1| Tdrkh protein [Mus musculus]
          Length = 560

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|110625942|ref|NP_082583.1| tudor and KH domain-containing protein [Mus musculus]
 gi|46396815|sp|Q80VL1|TDRKH_MOUSE RecName: Full=Tudor and KH domain-containing protein
 gi|29387121|gb|AAH49363.1| Tudor and KH domain containing protein [Mus musculus]
 gi|148706783|gb|EDL38730.1| mCG5013, isoform CRA_c [Mus musculus]
          Length = 560

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|254805268|ref|YP_003083489.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|254668810|emb|CBA06795.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|325136604|gb|EGC59205.1| ribonuclease PH [Neisseria meningitidis M0579]
          Length = 242

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|148706782|gb|EDL38729.1| mCG5013, isoform CRA_b [Mus musculus]
          Length = 566

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 125 LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 184

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 185 TQKEVAAAKHLI 196


>gi|319654666|ref|ZP_08008745.1| transcription accessory protein [Bacillus sp. 2_A_57_CT2]
 gi|317393582|gb|EFV74341.1| transcription accessory protein [Bacillus sp. 2_A_57_CT2]
          Length = 725

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS + V    D   V +  TVWV  +D   +G
Sbjct: 656 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSRQFVKHPLDVVSVGDVVTVWVDSVD-KHKG 714

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 715 RVALTM 720


>gi|315425802|dbj|BAJ47456.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
           subterraneum]
 gi|315425826|dbj|BAJ47479.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427684|dbj|BAJ49280.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
           subterraneum]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           R     +T +P +N++  G+VV++ DFG FV   G  DGL+HISQ+
Sbjct: 69  RSTFTLLTYMPLLNEVVLGEVVEITDFGCFVRI-GPIDGLIHISQI 113


>gi|312137244|ref|YP_004004581.1| translation initiation factor 2 subunit alpha (aeif-2a)
           [Methanothermus fervidus DSM 2088]
 gi|311224963|gb|ADP77819.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanothermus fervidus DSM 2088]
          Length = 257

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           ++ + PE  ++    V KV D+GAFV       ++G +HIS++S+  V    D VKE   
Sbjct: 2   ALKEWPEEGELVVATVKKVRDYGAFVRLEEYKGKEGFIHISEVSSGWVKNIRDFVKENQK 61

Query: 670 VWVKLLDFDD-RGKIKLSMK 688
           +  +++  +  +G++ LS+K
Sbjct: 62  IVARVVRVNPVKGQVDLSLK 81


>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
          Length = 248

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 34/195 (17%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLSGT 369
           R DGR+   +R  S     L R HGS+ + +GDT  +  V     GTR+ E         
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGEN-------P 57

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           ++    + +  +   TG++       ++E  +    +R +  +   T     T  ++ ++
Sbjct: 58  EKASIEVVWKPM---TGQI------GKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSS------MATVCGSSL----ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
             +DGS S      ++ V G  L    +L+ AG+P+      I  G+++DG+  +IL   
Sbjct: 109 VGNDGSVSFCRNVLLSIVSGCLLDYEHSLVFAGIPLKHLAVAIGCGVLEDGE--VILDTN 166

Query: 480 SGDEDHL---GHMDF 491
             +E  L    H+ F
Sbjct: 167 KAEEQQLKSFAHLVF 181


>gi|291084699|ref|NP_001014060.2| tudor and KH domain containing [Rattus norvegicus]
 gi|109465173|ref|XP_227438.4| PREDICTED: tudor and KH domain containing [Rattus norvegicus]
 gi|109467142|ref|XP_001053329.1| PREDICTED: tudor and KH domain containing [Rattus norvegicus]
 gi|149030752|gb|EDL85789.1| rCG51933, isoform CRA_a [Rattus norvegicus]
          Length = 560

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|30248295|ref|NP_840365.1| 3' exoribonuclease [Nitrosomonas europaea ATCC 19718]
 gi|61216039|sp|Q82XJ4|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718]
          Length = 241

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 25/191 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R + R    +R +      ++   GS L   G+T+ I   ++     E+    L G  + 
Sbjct: 3   RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASV----IEKVPPFLKGAGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +TGE  RM      G  S R +   RL  RA+  +L        T+++ 
Sbjct: 59  WLTAEYGMLPRSTGE--RMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD--DF 473
            ++ ++DG +  A++ G+ +AL DA             PI   VA +++G++K     D 
Sbjct: 117 CDVIQADGGTRTASITGAFVALYDAIDYLRAERMISQNPIRDHVAAVSVGILKGQPLLDL 176

Query: 474 IILSDISGDED 484
             L D   D D
Sbjct: 177 DYLEDSGCDTD 187


>gi|296131734|ref|YP_003638981.1| RNA binding S1 domain protein [Thermincola sp. JR]
 gi|296030312|gb|ADG81080.1| RNA binding S1 domain protein [Thermincola potens JR]
          Length = 122

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  + +FGAFV   G   GLVHIS+++   V    D +K+ D V VK++  
Sbjct: 4   EVGSILEGVVTGITNFGAFVELPGGETGLVHISEVAEAYVKDVKDYLKDKDKVKVKVIAI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           ++ GKI LS+K   Q   KP
Sbjct: 64  EN-GKIGLSIK---QANPKP 79


>gi|221201201|ref|ZP_03574241.1| ribonuclease PH [Burkholderia multivorans CGD2M]
 gi|221206345|ref|ZP_03579358.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221213625|ref|ZP_03586599.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221166414|gb|EED98886.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221173654|gb|EEE06088.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221179051|gb|EEE11458.1| ribonuclease PH [Burkholderia multivorans CGD2M]
          Length = 246

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++  R  E   +   G    
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGW--- 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  RA+  V    A  P T+ +  +
Sbjct: 64  -LTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  DA             PI   VA I++G V +G   +   
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLLAAGKLERSPIVDHVAAISVG-VYEGTPVL--- 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V  T +G
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAG 200


>gi|150399757|ref|YP_001323524.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           vannielii SB]
 gi|150012460|gb|ABR54912.1| translation initiation factor 2, alpha subunit [Methanococcus
           vannielii SB]
          Length = 265

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D PE   I  G V  V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  
Sbjct: 4   DFPEEGDIVIGNVTDVKAFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVA 63

Query: 673 KLLDFD-DRGKIKLSMK 688
           K++  +  + +I LS+K
Sbjct: 64  KVMRVNPGKNQIDLSLK 80


>gi|322368923|ref|ZP_08043490.1| hypothetical protein ZOD2009_05537 [Haladaptatus paucihalophilus
           DX253]
 gi|320551654|gb|EFW93301.1| hypothetical protein ZOD2009_05537 [Haladaptatus paucihalophilus
           DX253]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + YKG V    DFG F+       GL+H S+L  +R  ++ D   +GDTV+V+++   D 
Sbjct: 39  RFYKGTVDGFADFGVFIDIGNHVTGLLHKSEL--DRRLESLD-WDQGDTVYVEVIGVRDN 95

Query: 681 GKIKLSMKV 689
           G + LS  +
Sbjct: 96  GNVDLSWSI 104


>gi|294495170|ref|YP_003541663.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
           DSM 5219]
 gi|292666169|gb|ADE36018.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
           DSM 5219]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 12/75 (16%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KT 660
           +I  +P + ++ +G+VV+ ++FGAFV   GA DGL+H+SQ++ + ++             
Sbjct: 74  AIMFIPTLQEVIEGEVVETVEFGAFVS-IGAMDGLLHVSQITDDFMSYDGKNGRLISKNV 132

Query: 661 SDVVKEGDTVWVKLL 675
           + V+ EGD V  +++
Sbjct: 133 NKVLSEGDRVRARIV 147


>gi|159163269|pdb|1WE8|A Chain A, Solution Structure Of Kh Domain In Protein Bab28342
          Length = 104

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 9   LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 68

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 69  TQKEVAAAKHLI 80


>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           +  + +AL+DAGVP+     G+   L  DG
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALNSDG 163


>gi|268679253|ref|YP_003303684.1| RNA binding S1 domain protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617284|gb|ACZ11649.1| RNA binding S1 domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 558

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG++  +  FGAFV   G  +GL+H    S +R  K  ++ K GD V VK++  
Sbjct: 375 KVGDVVKGEITTITAFGAFVRIGGI-EGLLHNEDASWDRNNKCKELFKVGDEVEVKIVKI 433

Query: 678 DDRG-KIKLSMK 688
           D+   K+ LS K
Sbjct: 434 DEEAEKVSLSKK 445



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E+++ + D  EV    +G + K+  +G FV   G  DGLVH S++S +       + KE
Sbjct: 195 KEIVQELIDRDEV---VEGTIKKITTYGMFVD-VGGIDGLVHYSEISYKGPVNPGTLYKE 250

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           G+ + VK + +D D+  + LS+K
Sbjct: 251 GEVIPVKAIKYDKDKRHLSLSVK 273


>gi|221198064|ref|ZP_03571110.1| putative tex protein [Burkholderia multivorans CGD2M]
 gi|221204378|ref|ZP_03577395.1| putative tex protein [Burkholderia multivorans CGD2]
 gi|221175235|gb|EEE07665.1| putative tex protein [Burkholderia multivorans CGD2]
 gi|221181996|gb|EEE14397.1| putative tex protein [Burkholderia multivorans CGD2M]
          Length = 812

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 682 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 739

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
            G       L     R +I L+M++ D+
Sbjct: 740 AGQVVKVKVLDVDVKRQRISLTMRLDDE 767


>gi|77919626|ref|YP_357441.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
 gi|77545709|gb|ABA89271.1| RNAse PH [Pelobacter carbinolicus DSM 2380]
          Length = 244

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I    G  +   GS L   G+T+ +   T+    +E     L G  + 
Sbjct: 8   RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATV----EEGVPSFLRGQGQG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y+ LP AT +V      +R ++G       RL  R++  +         T+ I  
Sbjct: 64  WITAEYSMLPRAT-QVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDC 122

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA             P+   V+ +++GLV DG   +  
Sbjct: 123 DVLQADGGTRTAAITGAYVALHDAVYGLVRENQLSDSPLRDSVSAVSVGLV-DGHPLL-- 179

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D     T SG
Sbjct: 180 -DLDYAEDFRAAVDMNFVITGSG 201


>gi|51891481|ref|YP_074172.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
 gi|61215887|sp|Q67SL5|RNPH_SYMTH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|51855170|dbj|BAD39328.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
          Length = 273

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +           GS L   G T+ I   TL    +++    L G   
Sbjct: 1   MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATL----EDRVPPFLRGRGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+ +   A   R+ G      RL  RA+  V+   A    TL I  
Sbjct: 57  GWITAEYGMLPRATGQRTAREAARGRQGGRTMEIQRLIGRALRSVIDLAALGERTLIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +A++DA
Sbjct: 117 DVIQADGGTRTASITGAYVAMVDA 140


>gi|332159278|ref|YP_004424557.1| translation initiation factor IF-2 subunit alpha [Pyrococcus sp.
           NA2]
 gi|331034741|gb|AEC52553.1| translation initiation factor IF-2 subunit alpha [Pyrococcus sp.
           NA2]
          Length = 275

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V ++ ++GAF        ++  +HIS++++  V    D +KE
Sbjct: 1   MPRRAREYPEEGEFVVATVKRIHNYGAFFELDEYPGKEAFMHISEVASTWVRNIRDYLKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V  K++  D  +G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPKKGHIDLSLRRVTQQQRK 91


>gi|325566935|ref|ZP_08143713.1| general stress protein 13 [Enterococcus casseliflavus ATCC 12755]
 gi|325159107|gb|EGC71252.1| general stress protein 13 [Enterococcus casseliflavus ATCC 12755]
          Length = 126

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  +  +GAFV       GL+H+S++ +       +V++ G  + V+++D 
Sbjct: 4   QIGNIIEGTVTGIQPYGAFVSLDKETQGLIHVSEIQSGFTKNIHEVLQIGQKIRVQIIDI 63

Query: 678 DDRG-KIKLSMKVVDQNTGKP 697
           D+   KI LS + ++ +  +P
Sbjct: 64  DEYSQKISLSRRTLESSFVQP 84


>gi|293401931|ref|ZP_06646071.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304589|gb|EFE45838.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 717

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV      DGLVHIS++  +RV   S+   V +   VWV  +D  ++ 
Sbjct: 648 EGVVRNVVDFGAFVDIGLHEDGLVHISKMRRQRVQHPSEVVAVGDVVKVWVYNID-QEKQ 706

Query: 682 KIKLSM 687
           K++LS+
Sbjct: 707 KVQLSL 712


>gi|161524649|ref|YP_001579661.1| RNA-binding S1 domain-containing protein [Burkholderia multivorans
           ATCC 17616]
 gi|160342078|gb|ABX15164.1| RNA binding S1 domain protein [Burkholderia multivorans ATCC 17616]
          Length = 812

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 682 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 739

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
            G       L     R +I L+M++ D+
Sbjct: 740 AGQVVKVKVLDVDVKRQRISLTMRLDDE 767


>gi|17232741|ref|NP_489289.1| hypothetical protein alr5249 [Nostoc sp. PCC 7120]
 gi|17134388|dbj|BAB76948.1| alr5249 [Nostoc sp. PCC 7120]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I  ITD+ E  ++ +G V  V +FGAFV     +DGLVHISQL+   V     VVK 
Sbjct: 634 KEGITEITDLQEGMEL-EGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKKVVKV 692

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           G  V V++L+ + +  +I LSMK V Q
Sbjct: 693 GQVVKVRVLEVNAKLRRISLSMKAVKQ 719


>gi|71002516|ref|XP_755939.1| rRNA biogenesis protein RRP5 [Aspergillus fumigatus Af293]
 gi|66853577|gb|EAL93901.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus Af293]
          Length = 1822

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +   G+V KV +FGAF+    + +  GL H S+++ +RV     + +EGD V  K++
Sbjct: 1318 KVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKII 1377

Query: 676  DFD-DRGKIKLSMK 688
              D + GKI  S+K
Sbjct: 1378 KIDRESGKISFSLK 1391


>gi|332527984|ref|ZP_08404018.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332112558|gb|EGJ12351.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 241

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR  GR  + +R ++      +   GS L   GDTQ +   ++    +E+      G+  
Sbjct: 4   VRSSGRAHDALRPVTITRHYTKHAEGSVLVCFGDTQVLCTASV----EEKVPPHKRGSGE 59

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G  S R     RL  R++  V    A    ++ I 
Sbjct: 60  GWVTAEYGMLPRATHTRGDREAAR-GKQSGRTQEIQRLIGRSLRTVFDLGALGERSILID 118

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +A  D           A  PI   VA I++G+V+       
Sbjct: 119 CDVLQADGGTRTAAITGAFVAAQDAVNWLLAQGKIAASPIRDQVAAISVGIVQG----TP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+   ED     D  V  T SG
Sbjct: 175 LLDLEYIEDSACDTDMNVVMTGSG 198


>gi|302557132|ref|ZP_07309474.1| transcriptional accessory protein [Streptomyces griseoflavus
           Tu4000]
 gi|302474750|gb|EFL37843.1| transcriptional accessory protein [Streptomyces griseoflavus
           Tu4000]
          Length = 742

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I D+     + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK 
Sbjct: 641 KEGVEKIADL-SSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKP 699

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GD      L     R +I L++++ D+
Sbjct: 700 GDIVKVKVLDVDVPRKRISLTLRLDDE 726


>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
 gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 22/187 (11%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ D+  R+DGR     R I  ++G+  +  GS+   +G+ + +  V  G  E      +
Sbjct: 6   LLSDEGYRLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAV-YGPHEPR---GN 61

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ------- 418
            S    +  +++  F         R     RR  G  +     +H  + QT +       
Sbjct: 62  RSRALHDRVLVNCQFSMATFSTFER----KRRPRGDKKSQEMTLH--IQQTFEATILTQL 115

Query: 419 FPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +P + + I  E+ +SDG +    V  ++LAL+DAG+ +   V   ++G +    D + L 
Sbjct: 116 YPRSQIDIFVEVLQSDGGTLSVCVNAATLALIDAGIALKDYVCACSVGFI----DGVPLV 171

Query: 478 DISGDED 484
           DIS  E+
Sbjct: 172 DISSIEE 178


>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 7/175 (4%)

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
            Y+    +TGE  R     R+    G   R+     +         + I  ++ ++DG +
Sbjct: 41  QYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGT 100

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG--HMDFKVA 494
             A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+  G   +   + 
Sbjct: 101 YAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEEAAGGPQLALALL 156

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV-LSESRLQLGE 548
                I  ++MD ++       ++ A  QA R    +L+ + +  + E+ + LG+
Sbjct: 157 PASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEASILLGD 211


>gi|313619754|gb|EFR91362.1| protein YhgF [Listeria innocua FSL S4-378]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 712 RIALTMRNPD 721


>gi|158425343|ref|YP_001526635.1| 30S ribosomal protein S1 [Azorhizobium caulinodans ORS 571]
 gi|158332232|dbj|BAF89717.1| ribosomal protein S1 [Azorhizobium caulinodans ORS 571]
          Length = 563

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+++++    E  +  +G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 186 EQRHELVQNL----EEGQAIEGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRVNHPTEV 240

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV VK++  + +  +I L MK
Sbjct: 241 LNIGQTVKVKIIKINHETHRISLGMK 266



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  +
Sbjct: 286 FKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDPAK 345

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 346 RRISLGLKQTLQN 358


>gi|282900962|ref|ZP_06308895.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
 gi|281194053|gb|EFA69017.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 21/194 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++      +   GS L   G+TQ +  V++     E     L G+ + 
Sbjct: 5   RLDGRQPDQLRTLNFYPHFTRFAPGSVLAQCGETQVLCTVSI----TEGVPKFLMGSGKG 60

Query: 373 DFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     +   S R     RL  R++   L        TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQQRQERELLKLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A       GV    P+   +A +++GL+K G+ F+   D+
Sbjct: 121 QADAGTRTISITGGFIALAHAITHLLQQGVLERSPLCGQIAAVSVGLLK-GEAFL---DL 176

Query: 480 SGDEDHLGHMDFKV 493
              ED    +DF V
Sbjct: 177 DFTEDVNAEVDFNV 190


>gi|227549007|ref|ZP_03979056.1| transcription accessory protein [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078917|gb|EEI16880.1| transcription accessory protein [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 755

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           I +G V  V  FGAFV     +DGLVH+S +S   VA   +VV+ G       L    +R
Sbjct: 644 ILEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSRSFVADPHEVVRSGQVVKVKVLDVDVER 703

Query: 681 GKIKLSMKVVDQ-NTGKP 697
            +I LS+++ D   + KP
Sbjct: 704 QRIGLSLRLDDTPGSAKP 721


>gi|159129996|gb|EDP55110.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus A1163]
          Length = 1822

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +   G+V KV +FGAF+    + +  GL H S+++ +RV     + +EGD V  K++
Sbjct: 1318 KVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKII 1377

Query: 676  DFD-DRGKIKLSMK 688
              D + GKI  S+K
Sbjct: 1378 KIDRESGKISFSLK 1391


>gi|24213960|ref|NP_711441.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45658291|ref|YP_002377.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194819|gb|AAN48459.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45601533|gb|AAS71014.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 560

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 617 PEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVK 673
           PE+ +  + +G +  +  +GAFV      +GL+HIS ++  E+VA  +  +K+GDTV   
Sbjct: 364 PEIRRGNVLEGVITGITKYGAFVEVENGIEGLIHISDITWDEKVANPTSQLKKGDTVRYM 423

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD + D  +I   +K + +N
Sbjct: 424 ILDVNLDAQRISCGLKQLMEN 444



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V  +  FGAFV      +GL+H S+L+ +++  +  D++K+G  V   +LD D +
Sbjct: 284 VIRGTVTSLTKFGAFVELKEGLEGLIHTSELAWSKKPPQPKDILKKGQEVEALVLDIDFK 343

Query: 681 G-KIKLSMKVVDQN 693
             ++ L +K +  N
Sbjct: 344 NRRLSLGLKQLQPN 357


>gi|213964688|ref|ZP_03392888.1| transcriptional accessory protein [Corynebacterium amycolatum SK46]
 gi|213952881|gb|EEB64263.1| transcriptional accessory protein [Corynebacterium amycolatum SK46]
          Length = 763

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I+D+ +   I +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ 
Sbjct: 636 KEGVEKISDL-QPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSNMARGFVSDPHEVVRS 694

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQNT-GKP 697
           G+      L    +R +I LS+++ D  +  KP
Sbjct: 695 GEVVKVKVLDVDVERNRIGLSLRLDDDTSDAKP 727


>gi|148553491|ref|YP_001261073.1| ribonuclease PH [Sphingomonas wittichii RW1]
 gi|166228323|sp|A5V3R9|RNPH_SPHWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148498681|gb|ABQ66935.1| RNAse PH [Sphingomonas wittichii RW1]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R IS + G      GS L   GDT+ +V  ++    +E+    L G  +
Sbjct: 1   MRPSGRAPDQMRAISIETGFTVHAEGSVLISFGDTRVLVTASV----EEKVPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       A   ++ G      RL  R++  V+         + I  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       L+ +G     PI+  VA I+ G + +G   + L
Sbjct: 117 DVLQADGGTRTASISGGWVALRLAVDKLLASGAIAEDPITAQVAAISCG-IHEGTPVLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
             I   ED   H D      D+G
Sbjct: 176 DYI---EDSNAHADANFVLLDNG 195


>gi|4838357|gb|AAD30971.1|AF119121_1 putative RNA binding protein [Homo sapiens]
          Length = 606

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
           pisum]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R I  ++G+  +  GS+   +G+T+ +V    G  E    + +      
Sbjct: 9   LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTK-VVAAIYGPHE----IRTNRAKAP 63

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH-----PVLPQTAQFPYT-LRI 425
           ND  +    + C     +   +  +R     + A   +H         +T  +P + + I
Sbjct: 64  NDSAV----INCQYSMATFSRSERKRRPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDI 119

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             ++ +SDG +    V  ++LAL+DAG+ + + V      L  +G+  ++  DIS  E+ 
Sbjct: 120 FVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLA-NGETPLV--DISHLEET 176

Query: 486 LGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           +G     VA    SG  AM    +   I  N +   L +A RG  +I   ++K++ +   
Sbjct: 177 MGGPSLTVAILPISGKIAMLETSQ--RIHINHLEPVLTEAVRGCRYIYENLNKIIKKHYE 234

Query: 545 QLG 547
           ++G
Sbjct: 235 EIG 237


>gi|254779609|ref|YP_003057715.1| 30S ribosomal protein S1 [Helicobacter pylori B38]
 gi|254001521|emb|CAX29539.1| 30S ribosomal protein S1 [Helicobacter pylori B38]
          Length = 556

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSTK 444



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPALGIVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         K+GD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKKGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|307329928|ref|ZP_07609081.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
 gi|306884419|gb|EFN15452.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASV----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +T   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYAMLPRSTN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V      
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGG---- 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           I L D+  +ED     D  V  T  G
Sbjct: 173 IPLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665]
          Length = 254

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I+   G  ++  GS+L   G+T+ +   +      E     L G    
Sbjct: 10  RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASF----TEGVPRWLKGEGTG 65

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S+  +   R  G      RL  R++  V+  +A    T+ +  +
Sbjct: 66  WVTAEYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCD 125

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISK-PVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL +A            G  + K  VA +++G+V    D + 
Sbjct: 126 VLDADGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIV----DGVP 181

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T +G
Sbjct: 182 VLDLPYVEDVKAETDMNVVVTGAG 205


>gi|170748864|ref|YP_001755124.1| 30S ribosomal protein S1 [Methylobacterium radiotolerans JCM 2831]
 gi|170655386|gb|ACB24441.1| ribosomal protein S1 [Methylobacterium radiotolerans JCM 2831]
          Length = 570

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  K+ KG+V  + D+GAFV      +GL+H+S++S T++      +V     V V++L
Sbjct: 286 PEGAKL-KGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQIL 344

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + D  + +I L +K   QN
Sbjct: 345 EVDPVKRRISLGLKQTLQN 363



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  
Sbjct: 201 EEGQVIDGVVKNITEYGAFVDLGGI-DGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKI 259

Query: 678 D-DRGKIKLSMK 688
           + +  +I L +K
Sbjct: 260 NHETHRISLGIK 271


>gi|16799970|ref|NP_470238.1| hypothetical protein lin0897 [Listeria innocua Clip11262]
 gi|16413347|emb|CAC96129.1| lin0897 [Listeria innocua Clip11262]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 712 RIALTMRNPD 721


>gi|164425200|ref|XP_962876.2| hypothetical protein NCU06272 [Neurospora crassa OR74A]
 gi|157070830|gb|EAA33640.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1774

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 610  IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEG 667
            + +I+D+ E   I  G+V KV +FGAF+   G+ +  GL H S++S + V     + +EG
Sbjct: 1279 LTTISDLKEGQTI-TGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEG 1337

Query: 668  DTVWVKLLDFDDRGK-IKLSMK 688
            D V  K+L  D   K I L +K
Sbjct: 1338 DKVKAKVLKVDITAKRINLGLK 1359


>gi|313624453|gb|EFR94460.1| protein YhgF [Listeria innocua FSL J1-023]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 712 RIALTMRNPD 721


>gi|300769925|ref|ZP_07079804.1| YhgF like protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762401|gb|EFK59218.1| YhgF like protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 745

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I +I+D+  +     G V  + +FGAFV     +DGLVH+SQL+   V+   +VVK    
Sbjct: 627 INTISDL-RIGMKLPGIVTNITNFGAFVDIGVHQDGLVHLSQLANRFVSDPHEVVKVQQQ 685

Query: 670 VWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           V V + + D+ R +I LSMK  ++   +P
Sbjct: 686 VMVTVTEVDEKRNRIGLSMKTEEKAAPRP 714


>gi|76811207|ref|YP_333734.1| transcription accessory protein, TEX [Burkholderia pseudomallei
           1710b]
 gi|76580660|gb|ABA50135.1| transcription accessory protein, TEX [Burkholderia pseudomallei
           1710b]
          Length = 821

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 691 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 749

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 750 GQVVKVKVLDVDVKRQRISLTMRLDD 775


>gi|319403578|emb|CBI77160.1| 30S ribosomal protein S1 [Bartonella rochalimae ATCC BAA-1498]
          Length = 566

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN    G++    +FG F+   G  DG+VH+S L   R   +  D+  +GDTV   +LD 
Sbjct: 369 VNSQITGEIKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDIYNKGDTVQAVVLDV 428

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 429 DVEKERISLGIK 440


>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 297 DIQAKVVR---TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           DI  ++ R   T +++ K R+DGR     RDIS + G++ +  GSS    G+TQ  ++V 
Sbjct: 2   DIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQ--IIVG 59

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           +  +  E + D+    +    + +   LP A+      G P  R +   R+  R + 
Sbjct: 60  VKPQIGEPFPDT---PEMGVILTNSELLPMASPTFEP-GPPDERSVELSRVVDRCVR 112


>gi|124003430|ref|ZP_01688279.1| S1 RNA binding domain protein [Microscilla marina ATCC 23134]
 gi|123990999|gb|EAY30451.1| S1 RNA binding domain protein [Microscilla marina ATCC 23134]
          Length = 764

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + +I D+    K+  G V  V  FGAFV     +DGLVHIS+LS   V+  ++VVK  
Sbjct: 627 EGVNTIEDLKTGMKL-NGVVTNVTKFGAFVDIGVHQDGLVHISELSNTFVSDPNEVVKVQ 685

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V V +LD D +R +I+L+MK
Sbjct: 686 QKVEVMVLDVDVERKRIQLTMK 707


>gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104]
 gi|166228290|sp|A0QD04|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104]
          Length = 259

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G  +   GS L   G T+ +   ++     E       G+   
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASV----TEGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   +   R  G      RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 VDLPYEEDARAEVDMNVVATDTG 198


>gi|319406490|emb|CBI80131.1| 30S ribosomal protein S1 [Bartonella sp. 1-1C]
          Length = 566

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN    G++    +FG F+   G  DG+VH+S L   R   +  D+  +GDTV   +LD 
Sbjct: 369 VNSKITGEIKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDIYNKGDTVQAVVLDV 428

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 429 DVEKERISLGIK 440


>gi|34849374|gb|AAP58873.1| ribosomal protein S1 [Spiroplasma kunkelii CR2-3x]
          Length = 111

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
            +V  +  FGAF     A  GL+HIS++S   V    + V  GD V V++LD+D  + ++
Sbjct: 14  AKVTNITPFGAFCELKNAA-GLIHISEISDYYVRDIKEFVNIGDNVEVEVLDYDPVKKQV 72

Query: 684 KLSMK 688
           KLS K
Sbjct: 73  KLSYK 77


>gi|317180145|dbj|BAJ57931.1| 30S ribosomal protein S1 [Helicobacter pylori F32]
          Length = 552

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 268


>gi|199598131|ref|ZP_03211554.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|258538996|ref|YP_003173495.1| General stress protein 13 [Lactobacillus rhamnosus Lc 705]
 gi|199591057|gb|EDY99140.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|257150672|emb|CAR89644.1| General stress protein 13 [Lactobacillus rhamnosus Lc 705]
 gi|259649153|dbj|BAI41315.1| RNA binding protein [Lactobacillus rhamnosus GG]
          Length = 119

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G+V  V  +GAFV       GLVHIS+     V  TSD+   G  V V +LD D+   KI
Sbjct: 3   GKVTGVQPYGAFVMLDEHTQGLVHISECQHGYVKDTSDIFNVGQRVEVVILDIDEYTQKI 62

Query: 684 KLSMKVV 690
            LS++ +
Sbjct: 63  SLSLRAL 69


>gi|319781706|ref|YP_004141182.1| Tex-like protein protein-like protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167594|gb|ADV11132.1| Tex-like protein protein-like protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 775

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G V  V  FGAFV     +DGLVH+SQL+   +    +VVK GD V V+++D D  R
Sbjct: 655 LLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVRVVDVDIKR 714

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I LSM+      G P
Sbjct: 715 KRIALSMRKDSGEGGAP 731


>gi|309378698|emb|CBX22648.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 242

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
           melanoleuca]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 31  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 84

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 85  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACC 137

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           +  + +AL+DAGVP+     G+   L  DG
Sbjct: 138 LNAACMALVDAGVPMRALFCGVTCALNSDG 167


>gi|159026257|emb|CAO86406.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 293

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V K+  G VVK+  +G FV  CG   GL+H  Q++           K G  + V + + D
Sbjct: 190 VGKLLSGTVVKLQPYGVFVD-CGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEID 248

Query: 679 D-RGKIKLSMKVVDQNTGK 696
           + + +I LS K+++ + G+
Sbjct: 249 EYKNRISLSTKILEAHPGE 267


>gi|126313736|ref|XP_001366858.1| PREDICTED: similar to putative RNA binding protein [Monodelphis
           domestica]
          Length = 568

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ +      S 
Sbjct: 119 LTENTPVYEQLSVPQRSVGRIIGRGGETIRAICKSSGAKITCDKESEGTLLLTRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|78212274|ref|YP_381053.1| SSU ribosomal protein S1P [Synechococcus sp. CC9605]
 gi|78196733|gb|ABB34498.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +GQV  V  +G F+   G   GL+H S ++  R+    +V  +GD V   + + 
Sbjct: 315 EVGQLVEGQVAAVKPYGLFIDLGGI-SGLLHQSAITNGRLRSIREVFDQGDRVSALITEL 373

Query: 678 DD-RGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 374 DPGRGRIGLNTALLEGPPGELLI 396


>gi|329116408|ref|ZP_08245125.1| S1 RNA binding domain protein [Streptococcus parauberis NCFD 2020]
 gi|326906813|gb|EGE53727.1| S1 RNA binding domain protein [Streptococcus parauberis NCFD 2020]
          Length = 117

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G++  +  +GAFV       GLVHIS++ +  +   +D++ +G  V V+++D D+   K 
Sbjct: 9   GKITGIKPYGAFVALEDGTTGLVHISEIKSGYIDNINDILCKGQEVLVQVVDVDEFTNKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSLRTLEE 77


>gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018]
 gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 254

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R DGRD + +R +           GS L   G+T+ +   T          D+  G 
Sbjct: 12  KPIRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIGVPRWRRDTGLGW 71

Query: 370 QRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I
Sbjct: 72  ----VTAEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQI 127

Query: 426 VSEITESDGSSSMATVCGSSLALMDA 451
             ++ ++DG +  A++ G+ +AL+DA
Sbjct: 128 DCDVLQADGGTRTASITGAYVALVDA 153


>gi|154250605|ref|YP_001411429.1| 30S ribosomal protein S1 [Parvibaculum lavamentivorans DS-1]
 gi|154154555|gb|ABS61772.1| ribosomal protein S1 [Parvibaculum lavamentivorans DS-1]
          Length = 569

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E++ ++ +     ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   ++V
Sbjct: 190 EQRQELVENLKE----GQVLEGVVKNITDYGAFVDLGGV-DGLLHVTDIAWRRVNHPTEV 244

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV V+++  + +  +I L MK
Sbjct: 245 LSIGQTVKVQVIKVNHETQRISLGMK 270



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  +
Sbjct: 290 FKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEVDPVK 349

Query: 681 GKIKLSMK 688
            +I L +K
Sbjct: 350 RRISLGLK 357


>gi|118092989|ref|XP_421739.2| PREDICTED: similar to KIAA0185 [Gallus gallus]
          Length = 1826

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 587 IDDDGTVKIASSSLAEIEAARE--MIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + D G   I     A I A +E  ++RS +++ P V  I  G V KVM FG FV F    
Sbjct: 656 LSDKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGVLLI--GYVRKVMPFGVFVEFPFGV 713

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GL     +S + V  T D    G TV  K++  D ++ ++ LS+KV + ++G
Sbjct: 714 TGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVSECSSG 766


>gi|110004212|emb|CAK98550.1| conserved hypothetical protein yabr [Spiroplasma citri]
          Length = 107

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
            +V  +  FGAF     A  GL+HIS++S   V    + V  GD+V V++LD+D  + ++
Sbjct: 10  AKVTNITPFGAFCELKNAA-GLIHISEISDYYVRDIKEFVNIGDSVEVEVLDYDPVKKQV 68

Query: 684 KLSMK 688
           KLS K
Sbjct: 69  KLSYK 73


>gi|107029022|ref|YP_626117.1| RNA binding S1 [Burkholderia cenocepacia AU 1054]
 gi|105898186|gb|ABF81144.1| RNA binding S1 [Burkholderia cenocepacia AU 1054]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +  + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 685 REGVEKVSDLVPGM--MLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 742

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       +     R +I L+M++ D
Sbjct: 743 AGQVVKVKVIDVDVKRQRIALTMRLDD 769


>gi|315656450|ref|ZP_07909339.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493009|gb|EFU82611.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 259

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 23/208 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M ++  R DGR  + +R+++  +  +    G  L   G+T+ +   +L         DS 
Sbjct: 3   MTERIERADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSG 62

Query: 367 SGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y  LP AT       S  G  S R     RL  RA+   +   A    T
Sbjct: 63  LGW----VTAEYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENT 118

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +AL  A           G P    V  I++G++    
Sbjct: 119 IAIDCDVLQADGGTRTASITGAWIALQCAIAVGRDSGFIPGNPTRDSVCAISVGII---- 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG 499
           D I   D+  +ED     D  V  T SG
Sbjct: 175 DSIPRLDLPYEEDSRAETDMNVVMTGSG 202


>gi|22299589|ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
 gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
          Length = 330

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S + +     V    D V V ++D D +RG+I LS K ++
Sbjct: 209 YGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDQVKVMIIDLDAERGRISLSTKQLE 267

Query: 692 QNTG 695
              G
Sbjct: 268 PEPG 271


>gi|152978269|ref|YP_001343898.1| RNA-binding S1 domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150839992|gb|ABR73963.1| RNA binding S1 domain protein [Actinobacillus succinogenes 130Z]
          Length = 773

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ITD+ +   I +G +  V +FGAFV     +DGLVHIS LS   V     VVK G
Sbjct: 642 VEDITDL-QPGMILEGTITNVTNFGAFVDIGVHQDGLVHISGLSDRFVENPHQVVKTG 698


>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 69  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 122

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 123 RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 175

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+   L  D D  ++L   S  E
Sbjct: 176 LNAACMALVDAGVPMRALFCGVTCAL--DSDGTLVLDPTSKQE 216


>gi|330817153|ref|YP_004360858.1| RNA binding S1 [Burkholderia gladioli BSR3]
 gi|327369546|gb|AEA60902.1| RNA binding S1 [Burkholderia gladioli BSR3]
          Length = 777

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK 
Sbjct: 644 REGVEKVSDL-MPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           G       L     R +I L+M++ D+
Sbjct: 703 GQVVKVKVLDVDVKRQRIALTMRMDDE 729


>gi|300711776|ref|YP_003737590.1| translation initiation factor IF-2 subunit alpha [Halalkalicoccus
           jeotgali B3]
 gi|299125459|gb|ADJ15798.1| translation initiation factor IF-2 subunit alpha [Halalkalicoccus
           jeotgali B3]
          Length = 266

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   ++  G++ ++ DFG FV      D  GL+HIS++++  +    D V+ G TV  K+
Sbjct: 7   PTPGELVVGKIEEIEDFGVFVDLLEYEDKQGLIHISEVASGWIKNVRDHVRVGQTVVCKV 66

Query: 675 LDFDDRG--KIKLSMKVVDQNTGKPIV 699
           L+  D+G  +I LS K V+++  K  +
Sbjct: 67  LEV-DKGSQQIDLSYKDVNEHQRKDTI 92


>gi|291397996|ref|XP_002715590.1| PREDICTED: CG7082-like [Oryctolagus cuniculus]
          Length = 554

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|269123373|ref|YP_003305950.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
 gi|268314699|gb|ACZ01073.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R+I      ++   GS L   G+T+ I  VT+    +E+    L    +
Sbjct: 1   MRTNNRKNNELREIKITREYIKYPEGSVLIEFGNTKVICNVTV----EEKVPPFLKNLGQ 56

Query: 372 NDFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G  S R +   RL  R++   L        TL +  
Sbjct: 57  GWVTAEYSMLPRATNTRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  LA       L+ +G+    PI   VA I++G V +     + 
Sbjct: 117 DVIQADGGTRTASITGGYLAMEIAINKLILSGLLNENPIRAKVAAISVGKVNNE----LF 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  +     G
Sbjct: 173 LDLEFYEDSHADVDMNIVMNSKG 195


>gi|297199655|ref|ZP_06917052.1| 30S ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
 gi|197713975|gb|EDY58009.1| 30S ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           G+V K++ FG FV      +GLVH+S+L++  VA   DVV+ GD
Sbjct: 201 GRVTKLVPFGVFVELADGIEGLVHLSELNSVPVAAPEDVVQVGD 244


>gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
 gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
          Length = 254

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 29/211 (13%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R DGR  + +R I+ +  +     GS L   G+T+ I   T+     E  V    
Sbjct: 1   MSNHTRADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATI-----EPKVPLWM 55

Query: 368 GTQR---NDFMMHYNFLPCATGE-----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
             Q+         Y+ LP +T +     +S+ G    R +   RL  RA+  VL  +   
Sbjct: 56  KQQKVPGGWLTAEYSLLPYSTHDRKARDISK-GKLDGRTVEIQRLIGRALRAVLDLSKLG 114

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVK 468
             TL I  ++ ++DG +  A++ G+ LA       L+D G     P +  +A I++G++ 
Sbjct: 115 ENTLWIDCDVLQADGGTRTASITGAYLATRLALQKLLDTGKLAENPFTDSIAAISVGILG 174

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
             +    L D+   ED    +D  +  T  G
Sbjct: 175 GRE----LLDLPYTEDKDAEVDANIVMTGRG 201


>gi|99080544|ref|YP_612698.1| RNA binding S1 [Ruegeria sp. TM1040]
 gi|99036824|gb|ABF63436.1| RNA binding S1 [Ruegeria sp. TM1040]
          Length = 814

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+ + V    ++VK G
Sbjct: 668 VEEITDL-KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEIVKTG 724


>gi|332673856|gb|AEE70673.1| 30S ribosomal protein S1 [Helicobacter pylori 83]
          Length = 552

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDILEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVHVKAIAYDEEKRRLSLSIK 268


>gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
          Length = 253

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 8/146 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R+DGRD + +R +           GS L   G+T+ +   T          DS  G 
Sbjct: 12  KPIRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGW 71

Query: 370 QRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I
Sbjct: 72  ----VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQI 127

Query: 426 VSEITESDGSSSMATVCGSSLALMDA 451
             ++ ++DG +  A+V G+ +AL+DA
Sbjct: 128 DCDVLQADGGTRTASVTGAYVALVDA 153


>gi|271498722|ref|YP_003331747.1| ribonuclease PH [Dickeya dadantii Ech586]
 gi|270342277|gb|ACZ75042.1| ribonuclease PH [Dickeya dadantii Ech586]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNGMVASGKLKASPLKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 36/230 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYA 69
           RPL   T    + ++G+VL  +G+T VL     +    R LK GQ    +T  Y      
Sbjct: 12  RPLTF-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLK-GQGQGWITAEY------ 63

Query: 70  VGKIPGGYLRRESRPTEN------EILISRMIDRSIRPLFSKCYKNETQVII--NVMQHD 121
            G +P     R +R           + I R+I RS+R         E  + +  +V+Q D
Sbjct: 64  -GMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDCDVLQAD 122

Query: 122 LESSPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
             +    ++    + A  L+G+         P +G V    V  +NG+ V +    ED  
Sbjct: 123 GGTRTASITGACVALADALNGMVASGKLKASPLKGMVAAVSVGIVNGEAVCDLEYVEDSA 182

Query: 173 S-LDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIEA 217
           +  D+ V  T+D   M+E+    E    S D +L  +       + ++ A
Sbjct: 183 AETDMNVVMTEDG-RMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRA 231


>gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291]
 gi|61215988|sp|Q73X87|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 259

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G  +   GS L   G T+ +   ++     E       G+   
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASV----TEGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   +   R  G      RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 VDLPYEEDARAEVDMNVVATDTG 198


>gi|317012828|gb|ADU83436.1| 30S ribosomal protein S1 [Helicobacter pylori Lithuania75]
          Length = 556

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSAK 444



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|116689819|ref|YP_835442.1| RNA-binding S1 domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|116647908|gb|ABK08549.1| RNA binding S1 domain protein [Burkholderia cenocepacia HI2424]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +  + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 644 REGVEKVSDLVPGM--MLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 701

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       +     R +I L+M++ D
Sbjct: 702 AGQVVKVKVIDVDVKRQRIALTMRLDD 728


>gi|108742058|gb|AAI17595.1| Pdcd11 protein [Danio rerio]
          Length = 1431

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +   A +E+   + +S +D     +I  G VV + +FG  V F     GLV + +L+T
Sbjct: 507 ILTRKKALVESTLPIFQSYSDA-RPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTT 565

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           E V    ++   G  V VK+L  D+  K ++LS K V +
Sbjct: 566 ETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKSVTE 604


>gi|77165901|ref|YP_344426.1| ribonuclease PH [Nitrosococcus oceani ATCC 19707]
 gi|123593634|sp|Q3J8F0|RNPH_NITOC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76884215|gb|ABA58896.1| RNAse PH [Nitrosococcus oceani ATCC 19707]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I       +   GS L   G+T+ I   ++    +++    L GT R
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTRYAEGSVLVEFGNTRVICNASV----EDRIPRFLKGTGR 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    G  +  G    R +   R   RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL+DA             PI   +A I++G + +G   +  
Sbjct: 117 DVIQADGGTRTAAITGSYVALVDAINNRLKKRIITHSPIHGQLASISVG-IYEGTPVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   ++G    +Q   +      N +   L  AK G   +L + 
Sbjct: 174 -DLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQ 232

Query: 536 SKVLSES 542
           ++VL+++
Sbjct: 233 TEVLAKN 239


>gi|83746454|ref|ZP_00943505.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|207723807|ref|YP_002254205.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|207743767|ref|YP_002260159.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|300703571|ref|YP_003745173.1| RNAse ph (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
 gi|83726785|gb|EAP73912.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|206589012|emb|CAQ35974.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|206595166|emb|CAQ62093.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|299071234|emb|CBJ42552.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDT  +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRSVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  RA+  V   +A   +TL +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  DA           G PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAYDAVSVMRGKGLLTGEPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 173 LDLDYPEDSACDTDMNVVMTGNG 195


>gi|167738286|ref|ZP_02411060.1| putative tex protein [Burkholderia pseudomallei 14]
 gi|167893963|ref|ZP_02481365.1| putative tex protein [Burkholderia pseudomallei 7894]
          Length = 748

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|167719286|ref|ZP_02402522.1| putative tex protein [Burkholderia pseudomallei DM98]
          Length = 747

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|59801347|ref|YP_208059.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|194098405|ref|YP_002001463.1| ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|239998810|ref|ZP_04718734.1| putative ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|240014274|ref|ZP_04721187.1| putative ribonuclease PH [Neisseria gonorrhoeae DGI18]
 gi|240016710|ref|ZP_04723250.1| putative ribonuclease PH [Neisseria gonorrhoeae FA6140]
 gi|240080902|ref|ZP_04725445.1| putative ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|240112738|ref|ZP_04727228.1| putative ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|240115487|ref|ZP_04729549.1| putative ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|240117781|ref|ZP_04731843.1| putative ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|240121837|ref|ZP_04734799.1| putative ribonuclease PH [Neisseria gonorrhoeae PID24-1]
 gi|240123337|ref|ZP_04736293.1| putative ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|240125585|ref|ZP_04738471.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|240128040|ref|ZP_04740701.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|254493595|ref|ZP_05106766.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|260440703|ref|ZP_05794519.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|268594653|ref|ZP_06128820.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268597020|ref|ZP_06131187.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268598803|ref|ZP_06132970.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268601161|ref|ZP_06135328.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268603481|ref|ZP_06137648.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268681961|ref|ZP_06148823.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268684174|ref|ZP_06151036.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268686430|ref|ZP_06153292.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291044013|ref|ZP_06569729.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|293399206|ref|ZP_06643371.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|75432481|sp|Q5F840|RNPH_NEIG1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736920|sp|B4RL28|RNPH_NEIG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59718242|gb|AAW89647.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|193933695|gb|ACF29519.1| putative ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|226512635|gb|EEH61980.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|268548042|gb|EEZ43460.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268550808|gb|EEZ45827.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268582934|gb|EEZ47610.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268585292|gb|EEZ49968.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268587612|gb|EEZ52288.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268622245|gb|EEZ54645.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268624458|gb|EEZ56858.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268626714|gb|EEZ59114.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291012476|gb|EFE04465.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|291610620|gb|EFF39730.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|317164098|gb|ADV07639.1| ribonuclease PH [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 242

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 32/244 (13%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENAPPFLHGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTALRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALMDA-------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +AL  A       G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPILEAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
               D  +  T SG                  ++ +Q    G    L+E+ K+++ ++  
Sbjct: 185 GCDSDVNIVMTASG-----------------KIIEIQGTAEGAPFSLDELGKLVALAQKG 227

Query: 546 LGEF 549
           +GE 
Sbjct: 228 IGEL 231


>gi|237749845|ref|ZP_04580325.1| 30s ribosomal protein s1 [Helicobacter bilis ATCC 43879]
 gi|229374595|gb|EEO24986.1| 30s ribosomal protein s1 [Helicobacter bilis ATCC 43879]
          Length = 562

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG+V  + +FGAFV+  GA DGL+H      ++  K +D  K GD++ VK+   
Sbjct: 373 KVGDVIKGKVATITNFGAFVNL-GAVDGLLHNEDAFWDKSKKCADEFKVGDSIEVKIDKI 431

Query: 678 D 678
           D
Sbjct: 432 D 432



 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDT 669
           + I D  +V  + +  V  + D+GAFV      +G +HIS++S ++ + + SD +K G+ 
Sbjct: 279 KEIKDEIKVGYVIRVTVSNIEDYGAFVDLGNDVEGFLHISEMSWDKNIKQPSDCLKVGEE 338

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           + V++++ D D  ++++S+K
Sbjct: 339 INVEVIEIDPDNRRLRVSLK 358



 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V  FG FV   G+ DGLVH +++S           K GD V VK L+++ ++ 
Sbjct: 206 YEGVVKNVTKFGLFVEI-GSVDGLVHFTEISHRGPVNPEKHYKVGDKVQVKPLEYNEEKN 264

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ LS++ +  +  K I
Sbjct: 265 RLSLSIRALFDDPWKEI 281


>gi|208434951|ref|YP_002266617.1| ribosomal protein S1 [Helicobacter pylori G27]
 gi|208432880|gb|ACI27751.1| ribosomal protein S1 [Helicobacter pylori G27]
          Length = 556

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSAK 444



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVCQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|168031842|ref|XP_001768429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680354|gb|EDQ66791.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1785

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S+  + ++AA  +   I+ + +   +  G V  + D G FV F G   GL  + Q++ 
Sbjct: 616 IVSAKQSLLQAASSLPSDISQL-QPQSVIPGYVANITDRGCFVRFLGRLTGLASVPQVAD 674

Query: 655 ERVAKTSDVVKEGDTVWVKLLD-FDDRGKIKLSMK 688
           E V+  S+    G +V  ++L+ + D GK  L +K
Sbjct: 675 EFVSDPSNHFSVGQSVRAQVLEVYHDTGKFSLCLK 709


>gi|167910655|ref|ZP_02497746.1| transcription accessory protein, TEX [Burkholderia pseudomallei
           112]
          Length = 750

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|167823883|ref|ZP_02455354.1| transcription accessory protein, TEX [Burkholderia pseudomallei 9]
          Length = 748

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|325528639|gb|EGD05727.1| RNA-binding S1 domain-containing protein [Burkholderia sp. TJI49]
          Length = 775

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 644 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSTKFIKDPHEVVK 701

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
            G       L     R +I L+M++ D+
Sbjct: 702 AGQVVKVKVLDVDVKRQRISLTMRLDDE 729


>gi|308184793|ref|YP_003928926.1| 30S ribosomal protein S1 [Helicobacter pylori SJM180]
 gi|308060713|gb|ADO02609.1| 30S ribosomal protein S1 [Helicobacter pylori SJM180]
          Length = 556

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDIIEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSAK 444



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEIS-KELLEAKEPVLGVVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIK 272


>gi|302206447|gb|ADL10789.1| Transcriptional accessory protein tex, N-terminal domain protein
           [Corynebacterium pseudotuberculosis C231]
 gi|308276689|gb|ADO26588.1| Transcriptional accessory protein tex, N-terminal domain protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 767

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  I+D +P +  I +G V  V  FGAFV     +DGLVH+S L+   V+    VV+
Sbjct: 627 KEGVEKISDLIPGM--ILEGTVTNVAAFGAFVDVGVHQDGLVHVSALAETFVSDPHYVVR 684

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       +    +R +I LSMK+ D
Sbjct: 685 SGQVVKVKVMDVDPERKRISLSMKLSD 711


>gi|296533547|ref|ZP_06896117.1| 30S ribosomal protein S1 [Roseomonas cervicalis ATCC 49957]
 gi|296266117|gb|EFH12172.1| 30S ribosomal protein S1 [Roseomonas cervicalis ATCC 49957]
          Length = 569

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V   + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +LD 
Sbjct: 284 VGAKFSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQEVDVMILDV 343

Query: 678 DD-RGKIKLSMKVVDQNTGKP 697
           D+ + +I L +K   Q  G P
Sbjct: 344 DEPKRRISLGLK---QAQGNP 361



 Score = 40.4 bits (93), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  + D+GAFV   G  DGL+H++ ++  R+   S+ +  G  V V+++ F+ + 
Sbjct: 202 ILDGVVKNITDYGAFVDLGGV-DGLLHVTDIAWRRINHPSEALTIGQQVRVQVIRFNSET 260

Query: 681 GKIKLSMK 688
            +I L MK
Sbjct: 261 QRISLGMK 268



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           + +G++  + +FG FV      DG+VH+S LS E   + +    K+GD V  K+LD D +
Sbjct: 374 MVEGEIRNITEFGLFVGLAPEIDGMVHMSDLSWEIPGEQAMAAYKKGDIVKAKVLDVDVE 433

Query: 680 RGKIKLSMK 688
           + +I L +K
Sbjct: 434 KERISLGIK 442


>gi|295398556|ref|ZP_06808588.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
 gi|294973157|gb|EFG48952.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
          Length = 128

 Score = 41.6 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  + +G+V  +  +G FV       GL+HIS+++   V+   D    G  + VK++D D
Sbjct: 10  IGDVVEGEVTGLQPYGVFVQLDEDHQGLIHISEINHGYVSNVEDKFTIGQKLKVKIIDID 69

Query: 679 D-RGKIKLSMKVVDQ--NTGKP 697
           +  GK+ LS++ + +   + KP
Sbjct: 70  EFTGKMSLSIRALKKLATSNKP 91


>gi|124486118|ref|YP_001030734.1| translation initiation factor IF-2 subunit alpha
           [Methanocorpusculum labreanum Z]
 gi|124363659|gb|ABN07467.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanocorpusculum labreanum Z]
          Length = 257

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 627 VVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           V +V DF AFV+      R GL+ I++++   +    D ++EG  V  K+L  D+ RG I
Sbjct: 17  VTEVKDFAAFVNLDEYEGRQGLIPIAEIARGWIKYIRDYIREGQKVVCKVLHVDEHRGHI 76

Query: 684 KLSMKVVDQN 693
            LS+K V+++
Sbjct: 77  DLSLKDVNEH 86


>gi|326526035|dbj|BAJ93194.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + KG V K+  +GA +   G  R GL+HIS +S  RV   SD++K  D + V ++  +  
Sbjct: 96  LLKGNVHKIFPYGAQIRITGTNRSGLLHISNISQGRVLSVSDILKVDDELKVLVIKSNVS 155

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS+  ++   G
Sbjct: 156 DKIALSIADLESAPG 170


>gi|237812533|ref|YP_002896984.1| tex domain protein [Burkholderia pseudomallei MSHR346]
 gi|254179567|ref|ZP_04886166.1| putative tex protein [Burkholderia pseudomallei 1655]
 gi|184210107|gb|EDU07150.1| putative tex protein [Burkholderia pseudomallei 1655]
 gi|237504765|gb|ACQ97083.1| tex domain protein [Burkholderia pseudomallei MSHR346]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|53719161|ref|YP_108147.1| putative transcription accessory protein [Burkholderia pseudomallei
           K96243]
 gi|254189042|ref|ZP_04895553.1| putative tex protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254261867|ref|ZP_04952921.1| putative tex protein [Burkholderia pseudomallei 1710a]
 gi|52209575|emb|CAH35528.1| putative transcription accessory protein [Burkholderia pseudomallei
           K96243]
 gi|157936721|gb|EDO92391.1| putative tex protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254220556|gb|EET09940.1| putative tex protein [Burkholderia pseudomallei 1710a]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|221369598|ref|YP_002520694.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides KD131]
 gi|332561263|ref|ZP_08415581.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides WS8N]
 gi|221162650|gb|ACM03621.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides KD131]
 gi|332275061|gb|EGJ20377.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides WS8N]
          Length = 555

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++ +++GQ V      + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+
Sbjct: 185 ISNLFEGQTVDGVVKNITEYGAFVDLGGV-DGLLHVTDMAWRRVNHPSEILSIGETVKVQ 243

Query: 674 LLDFD-DRGKIKLSMK 688
           ++  + +  +I L MK
Sbjct: 244 VIKINKETHRISLGMK 259



 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 IGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 334

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DSAKRRVSLGLKQTMRN 351


>gi|254457481|ref|ZP_05070909.1| competence protein ComEA helix-hairpin-helix region
           [Campylobacterales bacterium GD 1]
 gi|207086273|gb|EDZ63557.1| competence protein ComEA helix-hairpin-helix region
           [Campylobacterales bacterium GD 1]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFDD-RGK 682
           G V  + DFGAFV      DG++HIS++S +R+A   +V+     +  ++++  D+ +GK
Sbjct: 633 GVVRNIADFGAFVDIGLKNDGMIHISKMSEKRIAHPLEVLSLNQYLPQIEVISVDNEKGK 692

Query: 683 IKLSM 687
           + LS+
Sbjct: 693 VSLSL 697


>gi|167815472|ref|ZP_02447152.1| transcription accessory protein, TEX [Burkholderia pseudomallei 91]
          Length = 747

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|317014439|gb|ADU81875.1| 30S ribosomal protein S1 [Helicobacter pylori Gambia94/24]
          Length = 552

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIK 268


>gi|257866923|ref|ZP_05646576.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257872560|ref|ZP_05652213.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257876520|ref|ZP_05656173.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
 gi|257800881|gb|EEV29909.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257806724|gb|EEV35546.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257810686|gb|EEV39506.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
          Length = 126

 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  +  +GAFV       GL+H+S++ +       +V++ G  + V+++D 
Sbjct: 4   QIGNIIEGTVTGIQPYGAFVSLDKETQGLIHVSEIQSGFTKNIHEVLQIGQKIRVQIIDI 63

Query: 678 DDRG-KIKLSMKVVDQNTGKP 697
           D+   KI LS + ++ +  +P
Sbjct: 64  DEYSQKISLSRRTLETSFVQP 84


>gi|254294704|ref|YP_003060727.1| 30S ribosomal protein S1 [Hirschia baltica ATCC 49814]
 gi|254043235|gb|ACT60030.1| ribosomal protein S1 [Hirschia baltica ATCC 49814]
          Length = 564

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GL+H+S++S T++      ++     V V +LD D D+ +
Sbjct: 288 GRVTNITDYGAFVELEDGVEGLIHVSEMSWTKKNLHPGKIISSSQEVEVMVLDVDSDKRR 347

Query: 683 IKLSMKVVDQN 693
           I L +K    N
Sbjct: 348 ISLGLKQTQNN 358



 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + +FG F+      DG+VHI+ +   R  + +     +GDTV  ++LD D ++ 
Sbjct: 374 EGEVRGITEFGMFIGLGPELDGMVHINDIDWNRSGEEAIQDFNKGDTVKARVLDVDVEKE 433

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q TG PI
Sbjct: 434 RISLGIK---QLTGDPI 447


>gi|238810101|dbj|BAH69891.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 722

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKLLDFD 678
           I  G V  + DFG FV+    +  L+HIS +   +   +  +S+VVK GD + +++L+ D
Sbjct: 649 ILDGSVQNITDFGIFVYIGIKQAALIHISNMKRNKDHYIKHSSEVVKTGDNIKIQILEID 708


>gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
 gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 95/243 (39%), Gaps = 38/243 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ---YVDSLSG 368
           +R DGR  + +R I  Q    +   GS L   GDT  +V  ++    DE    +  +   
Sbjct: 1   MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASI----DETLPPWKAADPA 56

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG------RLARRAIHPVLPQTAQFPYT 422
            Q+      Y  LP +T    R      RE   G      RL  R++   +      P T
Sbjct: 57  AQKGWLTAEYCMLPGSTSPRKR----REREKVDGRSTEIQRLIGRSLRACVDFETLGPRT 112

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA----GVPISK--PVAGIAMGLVKDG-DDFII 475
           + I  E+ ++DG +    + G  +AL DA    G  +SK  PV   ++  V  G      
Sbjct: 113 IMIDVEVLQADGGTRTLGITGGYIALCDAIATLGDKVSKDRPVLTTSIAAVSVGISHGTP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-------------ITAMQMDMKIGGISENI-MVMAL 521
           + D+   ED    +D  V  T SG              T  Q+D ++    + I  +M L
Sbjct: 173 ILDLDYIEDSQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMEL 232

Query: 522 QQA 524
           QQA
Sbjct: 233 QQA 235


>gi|226197337|ref|ZP_03792914.1| putative tex protein [Burkholderia pseudomallei Pakistan 9]
 gi|225930716|gb|EEH26726.1| putative tex protein [Burkholderia pseudomallei Pakistan 9]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|56750845|ref|YP_171546.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
 gi|81299505|ref|YP_399713.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 7942]
 gi|59802964|sp|P46228|RS1_SYNP6 RecName: Full=30S ribosomal protein S1
 gi|56685804|dbj|BAD79026.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
 gi|81168386|gb|ABB56726.1| SSU ribosomal protein S1P [Synechococcus elongatus PCC 7942]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S + +     V    D V V ++D D +RG+I LS K ++
Sbjct: 210 YGAFIDIGGV-SGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLE 268

Query: 692 QNTG 695
              G
Sbjct: 269 PEPG 272


>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
           3638]
 gi|29336823|sp|Q8U0M0|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
 gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV--TLGTREDEQYVD 364
           +L +K R+D R  E  R I  +VG++++  GS+L   G+TQ +V +  TLG    E + D
Sbjct: 18  LLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLG----EPFPD 73

Query: 365 SLSGTQRNDFMMHYN--FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV----LPQTAQ 418
           +      N  +M  N   +P A+      G P  R I   R+  R I       L +   
Sbjct: 74  T-----PNMGVMTTNVELVPLASPTFEP-GPPDERAIELARVIDRGIRESRALNLEKMVI 127

Query: 419 FP-YTLRIV---SEITESDGSSSMATVCGSSLALMDAGVP 454
            P   +R+V     + + DG+   A   G+  AL++A VP
Sbjct: 128 APGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVP 167


>gi|77465591|ref|YP_355094.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides 2.4.1]
 gi|126464030|ref|YP_001045143.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides ATCC 17029]
 gi|4761123|gb|AAD29257.1|AF107093_2 ribosomal protein S1 [Rhodobacter sphaeroides]
 gi|77390009|gb|ABA81193.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides 2.4.1]
 gi|126105841|gb|ABN78371.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides ATCC 17029]
          Length = 561

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++ +++GQ V      + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+
Sbjct: 191 ISNLFEGQTVDGVVKNITEYGAFVDLGGV-DGLLHVTDMAWRRVNHPSEILSIGETVKVQ 249

Query: 674 LLDFD-DRGKIKLSMK 688
           ++  + +  +I L MK
Sbjct: 250 VIKINKETHRISLGMK 265



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 IGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DSAKRRVSLGLKQTMRN 357


>gi|296228823|ref|XP_002759973.1| PREDICTED: tudor and KH domain-containing protein [Callithrix
           jacchus]
 gi|166092126|gb|ABY82106.1| tudor and KH domain containing isoform a (predicted) [Callithrix
           jacchus]
          Length = 560

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|141795595|gb|AAI39595.1| Pdcd11 protein [Danio rerio]
          Length = 932

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +   A +E+   + +S +D     +I  G VV + +FG  V F     GLV + +L+T
Sbjct: 507 ILTRKKALVESTLPIFQSYSDA-RPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTT 565

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           E V    ++   G  V VK+L  D+  K ++LS K V +
Sbjct: 566 ETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKSVTE 604


>gi|53723516|ref|YP_102989.1| transcription accessory protein, TEX [Burkholderia mallei ATCC
           23344]
 gi|67641333|ref|ZP_00440114.1| putative tex protein [Burkholderia mallei GB8 horse 4]
 gi|121599721|ref|YP_993138.1| putative tex protein [Burkholderia mallei SAVP1]
 gi|124384978|ref|YP_001026086.1| putative tex protein [Burkholderia mallei NCTC 10229]
 gi|126438941|ref|YP_001059209.1| putative tex protein [Burkholderia pseudomallei 668]
 gi|126449225|ref|YP_001080644.1| putative tex protein [Burkholderia mallei NCTC 10247]
 gi|126452035|ref|YP_001066475.1| putative tex protein [Burkholderia pseudomallei 1106a]
 gi|134277877|ref|ZP_01764592.1| putative tex protein [Burkholderia pseudomallei 305]
 gi|167002226|ref|ZP_02268016.1| putative tex protein [Burkholderia mallei PRL-20]
 gi|167845422|ref|ZP_02470930.1| putative tex protein [Burkholderia pseudomallei B7210]
 gi|217421596|ref|ZP_03453100.1| putative tex protein [Burkholderia pseudomallei 576]
 gi|242316461|ref|ZP_04815477.1| putative tex protein [Burkholderia pseudomallei 1106b]
 gi|254177979|ref|ZP_04884634.1| putative tex protein [Burkholderia mallei ATCC 10399]
 gi|254197363|ref|ZP_04903785.1| putative tex protein [Burkholderia pseudomallei S13]
 gi|254199935|ref|ZP_04906301.1| putative tex protein [Burkholderia mallei FMH]
 gi|254206268|ref|ZP_04912620.1| putative tex protein [Burkholderia mallei JHU]
 gi|254297444|ref|ZP_04964897.1| putative tex protein [Burkholderia pseudomallei 406e]
 gi|254358317|ref|ZP_04974590.1| putative tex protein [Burkholderia mallei 2002721280]
 gi|52426939|gb|AAU47532.1| transcription accessory protein, TEX [Burkholderia mallei ATCC
           23344]
 gi|121228531|gb|ABM51049.1| putative tex protein [Burkholderia mallei SAVP1]
 gi|124292998|gb|ABN02267.1| putative tex protein [Burkholderia mallei NCTC 10229]
 gi|126218434|gb|ABN81940.1| putative tex protein [Burkholderia pseudomallei 668]
 gi|126225677|gb|ABN89217.1| putative tex protein [Burkholderia pseudomallei 1106a]
 gi|126242095|gb|ABO05188.1| putative tex protein [Burkholderia mallei NCTC 10247]
 gi|134251527|gb|EBA51606.1| putative tex protein [Burkholderia pseudomallei 305]
 gi|147749531|gb|EDK56605.1| putative tex protein [Burkholderia mallei FMH]
 gi|147753711|gb|EDK60776.1| putative tex protein [Burkholderia mallei JHU]
 gi|148027444|gb|EDK85465.1| putative tex protein [Burkholderia mallei 2002721280]
 gi|157806810|gb|EDO83980.1| putative tex protein [Burkholderia pseudomallei 406e]
 gi|160699018|gb|EDP88988.1| putative tex protein [Burkholderia mallei ATCC 10399]
 gi|169654104|gb|EDS86797.1| putative tex protein [Burkholderia pseudomallei S13]
 gi|217395338|gb|EEC35356.1| putative tex protein [Burkholderia pseudomallei 576]
 gi|238522248|gb|EEP85694.1| putative tex protein [Burkholderia mallei GB8 horse 4]
 gi|242139700|gb|EES26102.1| putative tex protein [Burkholderia pseudomallei 1106b]
 gi|243062044|gb|EES44230.1| putative tex protein [Burkholderia mallei PRL-20]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  ++D+     + +G V  V  FGAFV     +DGLVH+S +ST+ +    ++VK 
Sbjct: 644 REGVEKVSDLAP-GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKA 702

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L+M++ D
Sbjct: 703 GQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|319777536|ref|YP_004137187.1| putative RNA binding protein [Mycoplasma fermentans M64]
 gi|318038611|gb|ADV34810.1| Putative RNA binding protein [Mycoplasma fermentans M64]
          Length = 718

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKLLDFD 678
           I  G V  + DFG FV+    +  L+HIS +   +   +  +S+VVK GD + +++L+ D
Sbjct: 645 ILDGSVQNITDFGIFVYIGIKQAALIHISNMKRNKDHYIKHSSEVVKTGDNIKIQILEID 704


>gi|313638705|gb|EFS03809.1| protein YhgF [Listeria seeligeri FSL S4-171]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 399 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 457

Query: 682 KIKLSMK 688
           +I L+M+
Sbjct: 458 RIALTMR 464


>gi|307267235|ref|ZP_07548738.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917730|gb|EFN48001.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 594 KIASSSLAEIEAAREMIRS--ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           KI  S    ++  RE ++   ++++ E + I +G+V  ++D G FV   G  DG + +S+
Sbjct: 164 KIVGSQKEVLKLEREKVKKALLSNLKEGD-IVEGKVKNIIDKGVFVDI-GGFDGFIPLSE 221

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +S ER+    +V+  GD V V +L+ D++ K
Sbjct: 222 ISWERIKNPREVLGIGDKVSVYILNVDEKKK 252


>gi|300858740|ref|YP_003783723.1| hypothetical protein cpfrc_01323 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686194|gb|ADK29116.1| hypothetical protein cpfrc_01323 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331003|gb|ADL21197.1| Putative transcriptional accessory protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 767

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  I+D +P +  I +G V  V  FGAFV     +DGLVH+S L+   V+    VV+
Sbjct: 627 KEGVEKISDLIPGM--ILEGTVTNVAAFGAFVDVGVHQDGLVHVSALAETFVSDPHYVVR 684

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       +    +R +I LSMK+ D
Sbjct: 685 SGQVVKVKVMDVDPERKRISLSMKLSD 711


>gi|307637717|gb|ADN80167.1| SSU ribosomal protein S1p [Helicobacter pylori 908]
 gi|325996320|gb|ADZ51725.1| 30S ribosomal protein S1 [Helicobacter pylori 2018]
 gi|325997909|gb|ADZ50117.1| 30S ribosomal protein S1 [Helicobacter pylori 2017]
          Length = 552

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGI-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIK 268


>gi|302341581|ref|YP_003806110.1| Tex-like protein [Desulfarculus baarsii DSM 2075]
 gi|301638194|gb|ADK83516.1| Tex-like protein [Desulfarculus baarsii DSM 2075]
          Length = 776

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V +FGAFV     +DGLVHIS+L+   VA    VVK    V V++L+ D +RG+I
Sbjct: 643 GIVTNVTNFGAFVDVGVHQDGLVHISELTDGFVADPRQVVKVQQQVRVRVLEVDLERGRI 702

Query: 684 KLSMK 688
            LSM+
Sbjct: 703 SLSMR 707


>gi|237749386|ref|ZP_04579866.1| tex transcriptional accessory protein [Oxalobacter formigenes
           OXCC13]
 gi|229380748|gb|EEO30839.1| tex transcriptional accessory protein [Oxalobacter formigenes
           OXCC13]
          Length = 784

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 607 REMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  I D+ P++  I +G V  V  FGAFV     +DGLVHIS LS + V     VV 
Sbjct: 656 REGVEDIKDLRPDM--ILEGVVTNVTAFGAFVDIGVHQDGLVHISALSDKFVKDPHQVVS 713

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            G  V VK+++ D  R +I L+M + ++
Sbjct: 714 TGQVVRVKVVEVDLQRRRIALTMNLAEK 741


>gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
 gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11]
 gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|215403187|ref|ZP_03415368.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|215410985|ref|ZP_03419793.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|215426669|ref|ZP_03424588.1| ribonuclease PH [Mycobacterium tuberculosis T92]
 gi|215430226|ref|ZP_03428145.1| ribonuclease PH [Mycobacterium tuberculosis EAS054]
 gi|215445522|ref|ZP_03432274.1| ribonuclease PH [Mycobacterium tuberculosis T85]
 gi|218753051|ref|ZP_03531847.1| ribonuclease PH [Mycobacterium tuberculosis GM 1503]
 gi|219557243|ref|ZP_03536319.1| ribonuclease PH [Mycobacterium tuberculosis T17]
 gi|224989745|ref|YP_002644432.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799612|ref|YP_003032613.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186279|ref|ZP_05763753.1| ribonuclease PH [Mycobacterium tuberculosis CPHL_A]
 gi|260200397|ref|ZP_05767888.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289554868|ref|ZP_06444078.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210]
 gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207]
 gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506]
 gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475]
 gi|1710618|sp|Q10628|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228291|sp|A1KID0|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228295|sp|A5U240|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808595|sp|C1AMY5|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|1419043|emb|CAA99973.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11]
 gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289439500|gb|EFD21993.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A]
 gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148]
 gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207]
          Length = 259

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +    G  +   GS L   G T+ +   ++     E        T   
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASV----TEGVPRWRKATGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ I  +
Sbjct: 60  WLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 VDLPYEEDSRAEVDMNVVATDTG 198


>gi|326923909|ref|XP_003208175.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Meleagris
            gallopavo]
          Length = 2041

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 587  IDDDGTVKIASSSLAEIEAARE--MIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGAR 643
            + D G   I     A I A +E  ++RS +++ P V  +  G V KVM FG FV F    
Sbjct: 904  LSDKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGV--LLTGYVRKVMPFGVFVEFPFGV 961

Query: 644  DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GL     +S + V  T D    G TV  K++  D ++ ++ L++KV + ++G
Sbjct: 962  TGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLNLKVSECSSG 1014


>gi|149912349|ref|ZP_01900907.1| 30S ribosomal protein S1 [Moritella sp. PE36]
 gi|149804575|gb|EDM64648.1| 30S ribosomal protein S1 [Moritella sp. PE36]
          Length = 215

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G++  + DFG F+   G  DGLVH+S +S +   + +    K+GD +   +L  D +R +
Sbjct: 28  GKIKSITDFGIFIGLDGGIDGLVHLSDISWDSTGEEAVREYKKGDEITAVVLQVDPERER 87

Query: 683 IKLSMKVVDQN 693
           I L +K +D++
Sbjct: 88  ISLGIKQIDED 98


>gi|145297207|ref|YP_001140048.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142849979|gb|ABO88300.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +  +R ++      +   GS L   G+T+ +   ++    D      L G  + 
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASV----DTSVPRFLKGKGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +T   SRM      G  S R +   RL  R++   +  TA   +++ + 
Sbjct: 59  WVTAEYGMLPRSTH--SRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             P+ + +A +++G+ + G+    
Sbjct: 117 CDVLQADGGTRTASITGACVALVDALNWMVEKGMIKQSPLKQMIAAVSVGMYQ-GE---A 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T+ G
Sbjct: 173 ICDLEYIEDSAAETDMNVVMTEDG 196


>gi|332810294|ref|XP_003308432.1| PREDICTED: tudor and KH domain-containing protein isoform 1 [Pan
           troglodytes]
 gi|332810296|ref|XP_003308433.1| PREDICTED: tudor and KH domain-containing protein isoform 2 [Pan
           troglodytes]
 gi|332810300|ref|XP_003308435.1| PREDICTED: tudor and KH domain-containing protein isoform 4 [Pan
           troglodytes]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|115471081|ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
 gi|113610675|dbj|BAF21053.1| Os07g0203300 [Oryza sativa Japonica Group]
          Length = 689

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           V  I  GQV +V  FG FV   G+    L H+S+LS E V       K GD V  K+L  
Sbjct: 236 VGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKI 295

Query: 678 D-DRGKIKLSMK 688
           D +R ++ + MK
Sbjct: 296 DEERHRVSIGMK 307


>gi|91774198|ref|YP_566890.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
           DSM 6242]
 gi|91713213|gb|ABE53140.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
           DSM 6242]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  +I  +P++ ++ +G VV+ ++FGAFV   GA DGL+H+SQ++
Sbjct: 71  IFEAIIFIPQLQEVIEGLVVETVEFGAFVS-IGAMDGLLHVSQIT 114


>gi|1075612|pir||S51485 ribosomal protein S1 - Synechococcus sp. (PCC 6301)
 gi|666973|dbj|BAA05946.1| ribosomal protein S1 [Synechococcus elongatus PCC 6301]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S + +     V    D V V ++D D +RG+I LS K ++
Sbjct: 210 YGAFIDIGGV-SGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLE 268

Query: 692 QNTG 695
              G
Sbjct: 269 PEPG 272


>gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
 gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
          Length = 245

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 33/253 (13%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ML   +R+DGR    +R  S ++  L    GS++   G T+ +   ++     E     L
Sbjct: 1   MLQDVIRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASI----QEGVPKFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--IHPVLPQTAQFPYTLR 424
            GT +      Y+ LP +T    +   P  RE   GRL  R   I  ++ ++ +    L 
Sbjct: 57  EGTGQGWLTAEYSMLPAST----QTRTP--RESHTGRLQGRTQEIQRLIGRSLRAAVKLD 110

Query: 425 IVSEIT--------ESDGSSSMATVCGSSLALM--------DAGVPISKPVAGIAMGLVK 468
            + EIT        ++DG +  A++ G  +A +        D    +  PVA +++G+V 
Sbjct: 111 QIGEITIIVDCDVLQADGGTRTASITGGYVATVLALRKIFPDTYRDLVSPVAAVSVGIV- 169

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
           +G   +   D++  ED     D  V     G    +Q   +    S   +   L  A +G
Sbjct: 170 NGTPML---DLNYAEDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKG 226

Query: 528 RLHILNEMSKVLS 540
              ++   SKVLS
Sbjct: 227 IAELMESQSKVLS 239


>gi|116872299|ref|YP_849080.1| transcriptional accessory RNA-binding protein, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116741177|emb|CAK20299.1| transcriptional accessory RNA-binding protein, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 725

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSMK 688
           +I L+M+
Sbjct: 712 RIALTMR 718


>gi|308190203|ref|YP_003923134.1| transcription accessory protein TEX [Mycoplasma fermentans JER]
 gi|307624945|gb|ADN69250.1| predicted transcription accessory protein TEX [Mycoplasma
           fermentans JER]
          Length = 718

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKLLDFD 678
           I  G V  + DFG FV+    +  L+HIS +   +   +  +S+VVK GD + +++L+ D
Sbjct: 645 ILDGSVQNITDFGIFVYIGIKQAALIHISNMKRNKDHYIKHSSEVVKTGDNIKIQILEID 704


>gi|301767872|ref|XP_002919361.1| PREDICTED: tudor and KH domain-containing protein-like [Ailuropoda
           melanoleuca]
          Length = 562

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|219111547|ref|XP_002177525.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217412060|gb|EEC51988.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 65

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           +V  +  +GAF+ F    DGL+HISQLS   +   S+++K G  V V++ +
Sbjct: 11  KVKSIASYGAFMDFGAQTDGLLHISQLSVGYIKDVSEILKPGQEVEVRITN 61


>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
 gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
          Length = 240

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R +    G L    GS L   G T+ +   ++     E       GT  
Sbjct: 2   LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASV----LEGVPKWRKGTGL 57

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y  LP AT   +       R+G  ++ EI   RL  R++   +        T+ 
Sbjct: 58  GWVTGEYAMLPRATTTRTDRESVRGRLGGRTQ-EIS--RLVGRSLRACVEPARLGENTVH 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A + G+ LAL DA             P+ + VA +++G+V    D 
Sbjct: 115 LDCDVLQADGGTRTAAITGAYLALADACRWMRDHGWVTSDPLVRSVAAVSVGIV----DG 170

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           + + D+  DED     D  V  T  G
Sbjct: 171 VPVLDLCYDEDVRAGTDMNVVMTGDG 196


>gi|329114777|ref|ZP_08243534.1| Ribonuclease PH [Acetobacter pomorum DM001]
 gi|326695908|gb|EGE47592.1| Ribonuclease PH [Acetobacter pomorum DM001]
          Length = 267

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 299 QAKVVRTVMLD----KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           Q +++R   L+      +R  GR  + +R I+ + G      GS+L   G T+ +   ++
Sbjct: 7   QKRIIRATHLNFTKELSMRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASI 66

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIH 410
               + +    L G         Y  LP AT       A   ++ G      RL  R++ 
Sbjct: 67  ----ENRVPPFLRGKGTGWVTAEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLR 122

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPV 459
            V    A    ++ +  ++  +DG +  A++ G+ +AL  A            +P+   V
Sbjct: 123 AVTDLNALGEMSITLDCDVLNADGGTRCASITGAWVALRLALGKLVATNVLPRLPLRGQV 182

Query: 460 AGIAMGLVKDGD----DFIILSDISGDEDHLGHMDFKV 493
           A ++ GL  +G     D++  S  S D + +   D ++
Sbjct: 183 AAVSCGLTTEGAVLDLDYVEDSSASADTNFVLTADRRI 220


>gi|313634101|gb|EFS00768.1| protein YhgF [Listeria seeligeri FSL N1-067]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 393 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 451

Query: 682 KIKLSMK 688
           +I L+M+
Sbjct: 452 RIALTMR 458


>gi|300721256|ref|YP_003710526.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
 gi|297627743|emb|CBJ88269.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR +  VR I       +   GS L   GDT+ +   ++    +E     L G  + 
Sbjct: 7   RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASV----EEGIPRFLKGQGQG 62

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +   A   ++ G      RL  R++   +       +T+ +  +
Sbjct: 63  WITAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+DA             P+   VA +++G+V  G+    L 
Sbjct: 123 VIQADGGTRTAAISGACVALVDALNKLVADGKLKESPLKSMVAAVSVGIV-GGEG---LC 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D  V   D G
Sbjct: 179 DLEYVEDSAAETDMNVVMIDDG 200


>gi|148594034|emb|CAL63586.1| ribosomal protein S1 [Sinorhizobium saheli]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1]
 gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 8/146 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R+DGRD + +R +           GS L   G+T+ +   T          DS  G 
Sbjct: 6   KPIRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGW 65

Query: 370 QRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I
Sbjct: 66  ----VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQI 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDA 451
             ++ ++DG +  A+V G+ +AL+DA
Sbjct: 122 DCDVLQADGGTRTASVTGAYVALVDA 147


>gi|297279980|ref|XP_001108076.2| PREDICTED: tudor and KH domain-containing protein [Macaca mulatta]
          Length = 538

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 96  LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 155

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 156 TQKEVAAAKHLI 167


>gi|194381224|dbj|BAG64180.1| unnamed protein product [Homo sapiens]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|72388474|ref|XP_844661.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360138|gb|AAX80558.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801194|gb|AAZ11102.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 265

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             P  E++  PP+ I +VIG GG  I+ +  +TGA + I D   V I + +  ++  A  
Sbjct: 18  MNPLQEVIEAPPEFIGHVIGEGGSTIKSLQCETGATITISDGCRVCITADNKEKLSDATS 77

Query: 609 MIRSITDVPEVNKIYKG 625
            +R I +   +N  Y+G
Sbjct: 78  RVRDIINAA-INPDYEG 93


>gi|33235571|dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
 gi|50508626|dbj|BAD31015.1| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
          Length = 1668

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  I  GQV +V  FG FV   G+    L H+S+LS E V       K GD V  K+L  
Sbjct: 1215 VGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKI 1274

Query: 678  D-DRGKIKLSMK 688
            D +R ++ + MK
Sbjct: 1275 DEERHRVSIGMK 1286



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 20/138 (14%)

Query: 571 GKVIRGIVEQ-TGAKVNIDDDGTVK--IASSSLAE----------IEAAREMIRSITDVP 617
           G ++ G+VE+ T A V +  +G  K  I +  LA+          + A + +I   +D+P
Sbjct: 459 GSIVSGVVERLTPAAVVVSVNGFCKGSILNEHLADHRDVEGQNLVLSAKQSLINCASDIP 518

Query: 618 ------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                     ++ G V  +++ G FV F G   G     +     V K S+    G +V 
Sbjct: 519 SEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVR 578

Query: 672 VKLLDFD-DRGKIKLSMK 688
             +L+ + +  ++KLS++
Sbjct: 579 SHILNVNAESARVKLSLQ 596


>gi|297663597|ref|XP_002810256.1| PREDICTED: tudor and KH domain-containing protein-like isoform 1
           [Pongo abelii]
 gi|297663599|ref|XP_002810257.1| PREDICTED: tudor and KH domain-containing protein-like isoform 2
           [Pongo abelii]
 gi|297663601|ref|XP_002810258.1| PREDICTED: tudor and KH domain-containing protein-like isoform 3
           [Pongo abelii]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|193786414|dbj|BAG51697.1| unnamed protein product [Homo sapiens]
          Length = 557

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 115 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 174

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 175 TQKEVAAAKHLI 186


>gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
 gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
          Length = 270

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 27/213 (12%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +VM+ +  R D R  + +R IS + G+      S L   G T+ I  VT+     E+ V 
Sbjct: 4   SVMIPRMERQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTI-----EEDVP 58

Query: 365 SLSGTQRND---FMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTA 417
                QR +       Y+ LP +T +  R    + +  G      RL  R++   +    
Sbjct: 59  RWMKVQRVEGGWLTAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGK 118

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGL 466
               T+ +  ++ ++DG +  A++ G+S+AL             A  P+ + V+ +++G+
Sbjct: 119 IGQRTIWVDCDVLQADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGI 178

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           + +G+  +   D+   ED    +D  +  TD G
Sbjct: 179 L-EGEALL---DLCYVEDKDAEVDMNLVMTDQG 207


>gi|148594036|emb|CAL63587.1| ribosomal protein S1 [Sinorhizobium arboris]
 gi|148594056|emb|CAL63597.1| ribosomal protein S1 [Sinorhizobium arboris LMG 14919]
 gi|148594072|emb|CAL63605.1| ribosomal protein S1 [Sinorhizobium arboris]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
 gi|166228314|sp|A4F913|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 24/204 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R++    G      GS L   G T+ +   ++     E      +G+  
Sbjct: 2   ARADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASV----QEGVPRWRAGSGL 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   +   R  G      RL  R++   +   A    T+ +  
Sbjct: 58  GWVTAEYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  +
Sbjct: 118 DVIQADGGTRTAAITGAYVALADAITWLSAAGRLTDPKPLSCSIAAVSVGVV----DGRV 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
             D+  +ED    +D  V  TD G
Sbjct: 174 RLDLPYEEDSRAEVDMNVVATDHG 197


>gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA       G+    P+   VA +++G + +G+    +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAINYMLEKGMIKKNPLKGMVAAVSVG-IYNGEP---I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEG 195


>gi|123979838|gb|ABM81748.1| tudor and KH domain containing [synthetic construct]
 gi|124000485|gb|ABM87751.1| tudor and KH domain containing [synthetic construct]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|73947485|ref|XP_852838.1| PREDICTED: similar to Exosome complex exonuclease RRP46 (Ribosomal
           RNA processing protein 46) (Exosome component 5) (p12B)
           (Chronic myelogenous leukemia tumor antigen 28) [Canis
           familiaris]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           +  + +AL+DAGVP+     G+   L  DG
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALNSDG 163


>gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01]
 gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIV----GAQAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDG 195


>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 253

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R I  + G + + +GS+    G+ + I  V    +   + + S +GT + 
Sbjct: 31  RADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQC 90

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEITE 431
           DF     F P  +GE  +  A   +E     +  +A+ P + +   +P +T+++   + E
Sbjct: 91  DF----KFAP-FSGEKRKGYAKDDQEKEFSMVLEQALTPSI-RLENYPKFTIQVFVIVLE 144

Query: 432 SDGSSS--MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +DGS S   A +  +SLAL +AG+ +   VA  A  +   G+  + L D+S  E+
Sbjct: 145 NDGSMSALAAAISCASLALANAGIEMLDMVA--ASSIAYFGESMLCL-DVSLKEE 196


>gi|154800462|ref|NP_001082837.2| protein RRP5 homolog [Danio rerio]
          Length = 1816

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +   A +E+   + +S +D     +I  G VV + +FG  V F     GLV + +L+T
Sbjct: 510 ILTRKKALVESTLPIFQSYSDA-RPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTT 568

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           E V    ++   G  V VK+L  D+  K ++LS K V +
Sbjct: 569 ETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKSVTE 607


>gi|148594052|emb|CAL63595.1| ribosomal protein S1 [Sinorhizobium saheli]
 gi|148594074|emb|CAL63606.1| ribosomal protein S1 [Sinorhizobium saheli]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|145312256|ref|NP_006853.2| tudor and KH domain-containing protein isoform a [Homo sapiens]
 gi|145312259|ref|NP_001077434.1| tudor and KH domain-containing protein isoform a [Homo sapiens]
 gi|145312270|ref|NP_001077432.1| tudor and KH domain-containing protein isoform a [Homo sapiens]
 gi|332278122|sp|Q9Y2W6|TDRKH_HUMAN RecName: Full=Tudor and KH domain-containing protein; AltName:
           Full=Tudor domain-containing protein 2
 gi|55960564|emb|CAI17177.1| tudor and KH domain containing [Homo sapiens]
 gi|119573794|gb|EAW53409.1| tudor and KH domain containing, isoform CRA_b [Homo sapiens]
 gi|119573796|gb|EAW53411.1| tudor and KH domain containing, isoform CRA_b [Homo sapiens]
 gi|162317984|gb|AAI56178.1| Tudor and KH domain containing [synthetic construct]
 gi|225000644|gb|AAI72470.1| Tudor and KH domain containing [synthetic construct]
 gi|261858570|dbj|BAI45807.1| tudor and KH domain containing [synthetic construct]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|288904714|ref|YP_003429935.1| RNA binding protein [Streptococcus gallolyticus UCN34]
 gi|306830717|ref|ZP_07463882.1| RNA binding protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306832894|ref|ZP_07466027.1| RNA binding protein [Streptococcus bovis ATCC 700338]
 gi|325977635|ref|YP_004287351.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731439|emb|CBI12991.1| putative RNA binding protein [Streptococcus gallolyticus UCN34]
 gi|304424969|gb|EFM28102.1| RNA binding protein [Streptococcus bovis ATCC 700338]
 gi|304427225|gb|EFM30332.1| RNA binding protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177563|emb|CBZ47607.1| Polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 118

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++DFD+   K 
Sbjct: 9   GTITGIKPYGAFVALDNGTTGLIHISEIKTGYIENIYQLLSVGEKVLVQVVDFDEFTQKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSLRTLEE 77


>gi|183221954|ref|YP_001839950.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912022|ref|YP_001963577.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776698|gb|ABZ94999.1| 30S Ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780376|gb|ABZ98674.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 566

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + +G+V  ++ FG FV      +GLVHIS++   R  K  D+ K GD+V   ++  + + 
Sbjct: 463 LVEGRVKSIVSFGVFVEVEPGYEGLVHISEIPDGRNIKLEDLYKVGDSVRTVVVKIEPNN 522

Query: 681 GKIKLSMKVVDQ 692
            KI LS+K  D+
Sbjct: 523 KKISLSIKDFDK 534



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           + +G V  + +FGAFV      +GL+H ++LS  ++     DV+K+G  V  ++LD D
Sbjct: 289 VVRGIVTSLTNFGAFVELKEGLEGLIHTTELSWAKKPPHPKDVLKKGQEVDSEILDID 346



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           + +G++  +  +GAFV      +GL+HIS ++ +   K   +++K+G +V  K+LD + D
Sbjct: 376 VLEGKITGITKYGAFVEVESGIEGLIHISDITWDEKEKNPLNLLKKGQSVQYKILDVNLD 435

Query: 680 RGKIKLSMKVVDQN 693
             +I   +K + ++
Sbjct: 436 AQRISCGLKQLSEH 449


>gi|55960563|emb|CAI17176.1| tudor and KH domain containing [Homo sapiens]
 gi|119573793|gb|EAW53408.1| tudor and KH domain containing, isoform CRA_a [Homo sapiens]
          Length = 557

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 115 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 174

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 175 TQKEVAAAKHLI 186


>gi|7109258|gb|AAF36701.1|AF227192_1 tudor and KH domain-containing protein [Homo sapiens]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|332220303|ref|XP_003259296.1| PREDICTED: tudor and KH domain-containing protein isoform 1
           [Nomascus leucogenys]
 gi|332220305|ref|XP_003259297.1| PREDICTED: tudor and KH domain-containing protein isoform 2
           [Nomascus leucogenys]
 gi|332220307|ref|XP_003259298.1| PREDICTED: tudor and KH domain-containing protein isoform 3
           [Nomascus leucogenys]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|325292030|ref|YP_004277894.1| Transcriptional accessory protein [Agrobacterium sp. H13-3]
 gi|325059883|gb|ADY63574.1| Transcriptional accessory protein [Agrobacterium sp. H13-3]
          Length = 812

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 686 ITDL-KPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 739


>gi|148594048|emb|CAL63593.1| ribosomal protein S1 [Sinorhizobium terangae]
 gi|148594050|emb|CAL63594.1| ribosomal protein S1 [Sinorhizobium terangae]
 gi|148594054|emb|CAL63596.1| ribosomal protein S1 [Sinorhizobium terangae]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|15668573|ref|NP_247371.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500642|sp|Q57840|RPOE1_METJA RecName: Full=DNA-directed RNA polymerase subunit E'
 gi|17943304|pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
           Polymerase Ii Rpb4RPB7 COMPLEX
 gi|17943306|pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
           Polymerase Ii Rpb4RPB7 COMPLEX
 gi|1591102|gb|AAB98387.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 187

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +  ++  +PE+ ++ +G+VV V++FG+FV   G  DGL+H+SQ+  + V+
Sbjct: 71  VFETLVYIPEMYELIEGEVVDVVEFGSFVRL-GPLDGLIHVSQIMDDYVS 119


>gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32]
 gi|254808602|sp|B7VHJ7|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A S ++ G      RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIV----GAQAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDG 195


>gi|332686064|ref|YP_004455838.1| general stress protein [Melissococcus plutonius ATCC 35311]
 gi|332370073|dbj|BAK21029.1| general stress protein [Melissococcus plutonius ATCC 35311]
          Length = 132

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I  G +  V  +GAFV       GL+H+S++ T        ++  G  V V+++D 
Sbjct: 14  KIGMILNGMITGVQPYGAFVSLDSKTQGLIHVSEIQTGYTQNIDSLLGIGQKVIVQIIDI 73

Query: 678 DDRG-KIKLSMKVVDQ 692
           D+   KI LS++ +++
Sbjct: 74  DEYSKKISLSLRTLEE 89


>gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
           maculans]
          Length = 280

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I AQ+       GSS    G+T+ +V VT G  E  Q         +
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVT-GPAEGRQSGQRGGQNGQ 71

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIVSEIT 430
               +  NF    +G   R     +R        R A   VL     +P+ T+ +   I 
Sbjct: 72  GKVEVEINF-AGFSGVDRRKRKSDKRTSEMEHCLRSAFEGVL-LLHLYPHSTITLNIHII 129

Query: 431 ESDGSSSMATVCGSSLALMDAGVPIS 456
             DGS   A +  ++LAL+DAG+P+S
Sbjct: 130 SQDGSLLAACINAATLALIDAGIPMS 155


>gi|289434167|ref|YP_003464039.1| resolvase domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170411|emb|CBH26951.1| resolvase domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 725

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSMK 688
           +I L+M+
Sbjct: 712 RIALTMR 718


>gi|170733158|ref|YP_001765105.1| RNA-binding S1 domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169816400|gb|ACA90983.1| RNA binding S1 domain protein [Burkholderia cenocepacia MC0-3]
          Length = 815

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 685 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 742

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       +     R +I L+M++ D
Sbjct: 743 AGQVVKVKVIDVDVKRQRIALTMRLDD 769


>gi|84683354|ref|ZP_01011257.1| 30S ribosomal protein S1 [Maritimibacter alkaliphilus HTCC2654]
 gi|84668097|gb|EAQ14564.1| 30S ribosomal protein S1 [Rhodobacterales bacterium HTCC2654]
          Length = 554

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +  +G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLSE-GQTVEGVVKNITEYGAFVDLGGV-DGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++
Sbjct: 221 DMAWRRVNHPSEILSIGETINVQVIKINKETHRISLGMKQLQED 264



 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 278 VHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDQA 337

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 338 KRRVSLGLKQTMRN 351


>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R    +R +   VG+L R  GS+ F  G +  +  V   T            ++  
Sbjct: 18  RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPT-----------ASRPR 66

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           D  + +  +      VS +     R   H    R+ +  ++        T++I  ++   
Sbjct: 67  DEKLDHAHIQVVFSPVSGISGTQERTYEH--FIRQVVEAIVLSALHPRTTIQITLQVLFD 124

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           DGS     +  + LAL+DAG+P+SK  + +   + K+G
Sbjct: 125 DGSILSTAINAAVLALIDAGIPLSKTCSAVTCMISKEG 162


>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
          Length = 227

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 6/154 (3%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           L+TG I+ Q+ G+     G T ++  V   R ++   DF      + E  +A    P   
Sbjct: 1   LKTGIIS-QAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFA----PFSC 55

Query: 78  LRRESRPTENE-ILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
            +R     +NE +++S ++  ++          + QV +NVM  + + SP   ++  AS 
Sbjct: 56  QKRRGHQQDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASL 115

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
           AL  + +P    ++G  V  I   ++L+P  DE+
Sbjct: 116 ALASASIPMYDLMIGTSVRQIPKLFLLDPTKDEE 149


>gi|255280488|ref|ZP_05345043.1| putative S1 RNA binding domain protein [Bryantella formatexigens
           DSM 14469]
 gi|255268953|gb|EET62158.1| putative S1 RNA binding domain protein [Bryantella formatexigens
           DSM 14469]
          Length = 354

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           VN +D   +  A   L E EA  +  R I++V EV  + +G V  +  +GAF++      
Sbjct: 218 VNEEDKKLILSAREILREREAEEKKAR-ISNV-EVGLVTEGTVESLQPYGAFINLGNGLS 275

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVH+SQ+S +R+   S V+K GD V VK++   D GK+ LSMK +
Sbjct: 276 GLVHVSQISEKRIKSPSAVLKVGDKVKVKVIAVKD-GKLSLSMKAL 320


>gi|220679188|emb|CAX13319.1| programmed cell death 11 [Danio rerio]
          Length = 1816

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +   A +E+   + +S +D     +I  G VV + +FG  V F     GLV + +L+T
Sbjct: 510 ILTRKKALVESTLPIFQSYSDA-RPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTT 568

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           E V    ++   G  V VK+L  D+  K ++LS K V +
Sbjct: 569 ETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKSVTE 607


>gi|315186954|gb|EFU20712.1| RNAse PH [Spirochaeta thermophila DSM 6578]
          Length = 223

 Score = 41.2 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM-HYNFLPC 383
           +S +VG+L    GS L   G+T+ +   ++     E+ V      +   ++   Y  LP 
Sbjct: 1   MSFEVGVLAYPAGSCLVSFGNTKVLCAASI-----EEGVPPFIEQEGEGWLTAEYAMLPA 55

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           +  E  +      R +   R   R++   L +T   PYT+ I  ++ ++DG +  A + G
Sbjct: 56  SVPEGRKRRERDSRAVEIQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGGTRTAAISG 115

Query: 444 SSLALMDA--------GVP-----ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
             +AL  A        GV      ++  VA +++G+V+      +++D+    D    +D
Sbjct: 116 GWVALYQALEKLAELHGVEGPEYFLAGQVAAVSVGIVEGQ----LVADLDFAHDLAAQVD 171

Query: 491 FKVAGTDSGITAMQMDMKIGGIS 513
             V   D  +  +Q + + G  +
Sbjct: 172 MNVVMCDDRLVEVQGNGEKGAFT 194


>gi|313678695|ref|YP_004056435.1| ribonuclease R [Mycoplasma bovis PG45]
 gi|312950828|gb|ADR25423.1| ribonuclease R [Mycoplasma bovis PG45]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVP-------EVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           KIA+ + A  E A ++ R + D+        ++N  ++GQV  +  FG F+ F    D +
Sbjct: 591 KIAAMNSASEENAVQLERDVNDLKFAEYFKSKINSEFEGQVFGITKFGMFIQFANKTDAM 650

Query: 647 VHISQL 652
           VHIS +
Sbjct: 651 VHISNI 656


>gi|254166930|ref|ZP_04873784.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|254168500|ref|ZP_04875344.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289596090|ref|YP_003482786.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197622555|gb|EDY35126.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197624540|gb|EDY37101.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289533877|gb|ADD08224.1| ribonuclease PH [Aciduliprofundum boonei T469]
          Length = 234

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 33/205 (16%)

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           M  R  + +R++       ++ +GS+L  +GDT    VV    +  E   D L       
Sbjct: 1   MRNRKPDEIRNVEIIPNYQKKPYGSALIKQGDT----VVLCSAQVIENVPDWLKEQNSGW 56

Query: 374 FMMHYNFLPCAT--------GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
               Y+ LP ++        G V+       R IG      R +   +      P T+ I
Sbjct: 57  LTAEYSMLPGSSETRIFRDRGHVNGRSKEIERIIG------RCLRAAVDLKKLGPRTIWI 110

Query: 426 VSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++    +A       LM  G     PI   VA I+ G+V +G+  +
Sbjct: 111 DCDVIQADGGTRTASITAGFVALSLAIRRLMKEGKLGENPIKYKVAAISAGIV-NGEPLL 169

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D++ +ED    +D  +A  + G
Sbjct: 170 ---DLAYEEDSQADVDINIAMNEEG 191


>gi|148258685|ref|YP_001243270.1| transcriptional accessory protein [Bradyrhizobium sp. BTAi1]
 gi|146410858|gb|ABQ39364.1| Putative transcriptional accessory protein containing S1
           RNA-binding domain [Bradyrhizobium sp. BTAi1]
          Length = 771

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ITD+ +   I +  V  V  FGAF      +DGL+HIS +S +R+    +VVK 
Sbjct: 640 QEGVEKITDL-KPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSEKRINDPREVVKP 698

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVD 691
           G       L     R +I L++++ D
Sbjct: 699 GQVVKVKVLDVDVPRNRISLTLRLSD 724


>gi|209544228|ref|YP_002276457.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531905|gb|ACI51842.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 19/174 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  + +R IS + G      GS+L   G T+ +   T+ +R        L G  +
Sbjct: 3   TRPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESR----VPPFLRGQGK 58

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  +  G  S R     RL  R++  V+   A    ++ +  
Sbjct: 59  GWVTAEYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDC 118

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDG 470
           ++  +DG +  A++ G+ +AL           + A +P++  VA ++ GL   G
Sbjct: 119 DVLNADGGTRCASITGAWVALRLALETLVRNRVLARLPLTAQVAAVSCGLTGAG 172


>gi|148594040|emb|CAL63589.1| ribosomal protein S1 [Sinorhizobium meliloti]
 gi|148594042|emb|CAL63590.1| ribosomal protein S1 [Sinorhizobium meliloti]
 gi|148594070|emb|CAL63604.1| ribosomal protein S1 [Sinorhizobium meliloti]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|254248084|ref|ZP_04941405.1| RNA binding S1 [Burkholderia cenocepacia PC184]
 gi|124872860|gb|EAY64576.1| RNA binding S1 [Burkholderia cenocepacia PC184]
          Length = 815

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 685 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 742

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       +     R +I L+M++ D
Sbjct: 743 AGQVVKVKVIDVDVKRQRIALTMRLDD 769


>gi|114704383|ref|ZP_01437291.1| 30S ribosomal protein S1 [Fulvimarina pelagi HTCC2506]
 gi|114539168|gb|EAU42288.1| 30S ribosomal protein S1 [Fulvimarina pelagi HTCC2506]
          Length = 569

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   +
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGIVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPT 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ++++ G TV V+++  + +  +I L MK
Sbjct: 239 EILQIGQTVKVQIIRINQETHRISLGMK 266



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD 678
           I +G+V    +FG F+   G  DG+VH+S L   R  +   V++E   GD V  ++LD D
Sbjct: 372 IVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQ--VIEEFNKGDLVKAQVLDVD 429

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L MK   Q  G P V
Sbjct: 430 VEKERISLGMK---QVGGDPFV 448


>gi|319786148|ref|YP_004145623.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
 gi|317464660|gb|ADV26392.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR  GR  + +R +  + G  +   GS L   GDT+ +   ++    D +    L G   
Sbjct: 4   VRPSGRAPDQLRPVRIERGFTRHAEGSVLVSFGDTRVLCTASI----DNKVPAFLRGKGE 59

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R +   + + A    T+ +  
Sbjct: 60  GWVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDC 119

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A + G+ +AL+DA
Sbjct: 120 DVLQADGGTRTAAITGAYVALVDA 143


>gi|255102475|ref|ZP_05331452.1| ribonuclease PH [Clostridium difficile QCD-63q42]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +       
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTGWINA 62

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            Y+ LP AT +  ++   SR +I        RL  RAI  V+        T+ +  ++ +
Sbjct: 63  EYSMLPRATQQ-RKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQ 121

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+ +A            +PI+  V+ I++G+V    + I + D+ 
Sbjct: 122 ADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHMLDLC 177

Query: 481 GDEDHLGHMDFKVAGTD 497
            +ED    +D  +  TD
Sbjct: 178 YEEDSKAQVDMNIIMTD 194


>gi|222147164|ref|YP_002548121.1| 30S ribosomal protein S1 [Agrobacterium vitis S4]
 gi|221734154|gb|ACM35117.1| 30S ribosomal protein S1 [Agrobacterium vitis S4]
          Length = 573

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 186 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 244

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G +V V+++  + +  +I L MK ++ +
Sbjct: 245 EILSIGQSVKVQIIRINQETHRISLGMKQLESD 277


>gi|123968121|ref|YP_001008979.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. AS9601]
 gi|123198231|gb|ABM69872.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. AS9601]
          Length = 401

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E    ++  +T + E+ ++ +G+V+ V  +G F+   GA  GL+H S L+   +    +V
Sbjct: 280 EKKASLVSKLTSL-ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTNGSIRSLREV 337

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            +EG+ +   + + D ++G+I L+  +++ + G+ I+
Sbjct: 338 FREGEVIKALISEIDLEKGRIGLNTALLENSAGELII 374


>gi|126700927|ref|YP_001089824.1| ribonuclease PH [Clostridium difficile 630]
 gi|115252364|emb|CAJ70205.1| Bifunctional enzyme, tRNA nucleotidyltransferase ;
           Nucleoside-triphosphatase [Clostridium difficile]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +       
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTGWINA 62

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            Y+ LP AT +  ++   SR +I        RL  RAI  V+        T+ +  ++ +
Sbjct: 63  EYSMLPRATQQ-RKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQ 121

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+ +A            +PI+  V+ I++G+V    + I + D+ 
Sbjct: 122 ADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHMLDLC 177

Query: 481 GDEDHLGHMDFKVAGTD 497
            +ED    +D  +  TD
Sbjct: 178 YEEDSKAQVDMNIIMTD 194


>gi|254976907|ref|ZP_05273379.1| ribonuclease PH [Clostridium difficile QCD-66c26]
 gi|255316047|ref|ZP_05357630.1| ribonuclease PH [Clostridium difficile QCD-76w55]
 gi|255518704|ref|ZP_05386380.1| ribonuclease PH [Clostridium difficile QCD-97b34]
 gi|255651826|ref|ZP_05398728.1| ribonuclease PH [Clostridium difficile QCD-37x79]
 gi|260684852|ref|YP_003216137.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260688510|ref|YP_003219644.1| ribonuclease Ph [Clostridium difficile R20291]
 gi|306521613|ref|ZP_07407960.1| ribonuclease Ph [Clostridium difficile QCD-32g58]
 gi|260211015|emb|CBA66330.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260214527|emb|CBE07044.1| ribonuclease Ph [Clostridium difficile R20291]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +       
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTGWINA 62

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            Y+ LP AT +  ++   SR +I        RL  RAI  V+        T+ +  ++ +
Sbjct: 63  EYSMLPRATQQ-RKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQ 121

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+ +A            +PI+  V+ I++G+V    + I + D+ 
Sbjct: 122 ADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHMLDLC 177

Query: 481 GDEDHLGHMDFKVAGTD 497
            +ED    +D  +  TD
Sbjct: 178 YEEDSKAQVDMNIIMTD 194


>gi|94309797|ref|YP_583007.1| ribonuclease PH [Cupriavidus metallidurans CH34]
 gi|166228306|sp|Q1LQ38|RNPH_RALME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|93353649|gb|ABF07738.1| ribonuclease PH [Cupriavidus metallidurans CH34]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I+      +   GS L   GDT+ +   ++  +          G+  
Sbjct: 1   MRPSGRAADALRPITLTRQYTRHAEGSVLSAFGDTKVLCTASVLAKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   A   ++ G      RL  RA+  V    A   YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  DA             PI   VA +++G+V    + + +
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAVSAMLRDGQIKASPIRDFVAAVSVGMV----NGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 173 LDLDYAEDSNCDTDMNVVMTGSG 195


>gi|227495770|ref|ZP_03926081.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
 gi|226834699|gb|EEH67082.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
          Length = 263

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 31/209 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR ++ +R ++      +   GS L   G T+ + V +      E       G+  
Sbjct: 8   TRKDGRATDELRPVTITRRWQEHGEGSVLVEFGRTRVLCVASF----TEGVPRWRKGSGE 63

Query: 372 NDFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP A  E  R G  S R ++G       RL  RA+  V+   A    T+ +
Sbjct: 64  GWVTAEYAMLPRAGSE--RSGRESVRGKVGGRTHEISRLIGRALRGVVDVAALGENTIAL 121

Query: 426 VSEITESDGSSSMATVCGSSLALMD--------------AGVP-ISKPVAGIAMGLVKDG 470
             ++ ++DG +  A+V G+ +AL D              AG P I+  ++ I++G++   
Sbjct: 122 DCDVLQADGGTRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGII--- 178

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            D +   D+  +ED   H D  V  T +G
Sbjct: 179 -DGVPCLDLPYEEDVRAHTDMNVVQTGAG 206


>gi|148594030|emb|CAL63584.1| ribosomal protein S1 [Sinorhizobium medicae]
 gi|148594058|emb|CAL63598.1| ribosomal protein S1 [Sinorhizobium medicae]
 gi|148594076|emb|CAL63607.1| ribosomal protein S1 [Sinorhizobium medicae]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|159184406|ref|NP_353671.2| hypothetical protein Atu0648 [Agrobacterium tumefaciens str. C58]
 gi|159139719|gb|AAK86456.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 774

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ITD+ +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 648 ITDL-KPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 701


>gi|73981591|ref|XP_851426.1| PREDICTED: similar to Tudor and KH domain containing protein [Canis
           familiaris]
          Length = 551

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|283780454|ref|YP_003371209.1| ribonuclease PH [Pirellula staleyi DSM 6068]
 gi|283438907|gb|ADB17349.1| ribonuclease PH [Pirellula staleyi DSM 6068]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 25/189 (13%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R I  +    + + GS L   G+T  +   ++    D +  D L+G  +     
Sbjct: 3   RTASELRPIKIKRNYTKMSPGSVLIEAGETVVLCTASV----DAKVPDWLAGKGKGWITA 58

Query: 377 HYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
            YN LP +T    +        R     RL  R++  V+   A     L++  ++ ++DG
Sbjct: 59  EYNMLPHSTRPRKQRERAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADG 118

Query: 435 SSSMATVCGSSLALMDA------------GVPISKP-----VAGIAMGLV--KDGDDFII 475
            +  A++ G+ +A++DA             +PI++P     VA I++G+V  K   D   
Sbjct: 119 GTRTASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPTLDLEY 178

Query: 476 LSDISGDED 484
           + D+  D D
Sbjct: 179 VQDVDADVD 187


>gi|255308380|ref|ZP_05352551.1| ribonuclease PH [Clostridium difficile ATCC 43255]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +       
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTGWINA 62

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            Y+ LP AT +  ++   SR +I        RL  RAI  V+        T+ +  ++ +
Sbjct: 63  EYSMLPRATQQ-RKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQ 121

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+ +A            +PI+  V+ I++G+V    + I + D+ 
Sbjct: 122 ADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHMLDLC 177

Query: 481 GDEDHLGHMDFKVAGTD 497
            +ED    +D  +  TD
Sbjct: 178 YEEDSKAQVDMNIIMTD 194


>gi|217034328|ref|ZP_03439744.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10]
 gi|216943213|gb|EEC22680.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 268


>gi|148594012|emb|CAL63575.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594014|emb|CAL63576.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594018|emb|CAL63578.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|126695894|ref|YP_001090780.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542937|gb|ABO17179.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9301]
          Length = 401

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E    ++  +T + E+ ++ +G+V+ V  +G F+   GA  GL+H S L+   +    +V
Sbjct: 280 EKKASLVSKLTSL-ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTNGSIRSLREV 337

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            +EG+ +   + + D ++G+I L+  +++ + G+ I+
Sbjct: 338 FREGEMIKALISEIDLEKGRIGLNTALLENSAGELII 374


>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+        ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +  + +AL+DAGVP+     G+   L  DG+
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGN 164


>gi|308063837|gb|ADO05724.1| 30S ribosomal protein S1 [Helicobacter pylori Sat464]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDRG-KIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDRKISLSAK 440



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIK 268


>gi|298708733|emb|CBJ30695.1| Plastid ribosomal protein S1 [Ectocarpus siliculosus]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V  +  +GAFV   G   GL+HISQ+S +R+     +++ G  +   ++D D   
Sbjct: 290 VVEGHVKAIKPYGAFVEIRGM-SGLLHISQISFDRIEDLPSIMQMGMKLKCMIIDHDKVN 348

Query: 681 GKIKLSMKVVDQNTGKPI 698
           G+I LS K ++   G  I
Sbjct: 349 GRIALSTKTLEPEPGDMI 366


>gi|269216890|ref|ZP_06160744.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
 gi|269129697|gb|EEZ60781.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 26/197 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R    +RD++ + G+++   GS L   GDT  +V  T+    +++      G+   
Sbjct: 11  RVDNRLDRAMRDVTLERGVMKNASGSCLVKFGDTHVLVSATI----EDRVAGWRKGSGLG 66

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF-----PYTLRIVS 427
                Y  LP A     R    ++   G  +   R I   L             T+ I  
Sbjct: 67  WLTAEYAMLPAAG--TKRTPRETKGRKGRSQEIERLIGRSLRNVCDMGRMGGEVTMTIDC 124

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  DA             P+   VA +++G+V       +L
Sbjct: 125 DVLQADGGTRTASITGAWVAAWDAFEMWRMAGRCKTNPLFGQVAAVSVGMVGG----RLL 180

Query: 477 SDISGDEDHLGHMDFKV 493
            D+   ED    +D  V
Sbjct: 181 LDLDYREDSQAEIDMNV 197


>gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
          Length = 262

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +    G  +   GS L   G T+ +   ++     E        T   
Sbjct: 7   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASV----TEGVPRWRKATGLG 62

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ I  +
Sbjct: 63  WLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 123 VLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 178

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 179 VDLPYEEDSRAEVDMNVVATDTG 201


>gi|148594022|emb|CAL63580.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594024|emb|CAL63581.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594026|emb|CAL63582.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
 gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R +  Q G  +   GS L   GDT+ +   ++ T        S SG    
Sbjct: 3   RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGW--- 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT       A   +  G      RL  RA+   L   A    T+ I  +
Sbjct: 60  -VTAEYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + GS +AL DA
Sbjct: 119 VLQADGGTRTAAITGSYVALQDA 141


>gi|260204601|ref|ZP_05772092.1| ribonuclease PH [Mycobacterium tuberculosis K85]
 gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
 gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +    G  +   GS L   G T+ +   ++     E        T   
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASV----TEGVPRWRKATGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ I  +
Sbjct: 60  WLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 VDLPYEEDSPAEVDMNVVATDTG 198


>gi|148594020|emb|CAL63579.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|33863501|ref|NP_895061.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9313]
 gi|33640950|emb|CAE21408.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9313]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +GQVV V  +G F+   G   GL+H S ++   +    +V  +GD V   + + 
Sbjct: 312 EVGQLVEGQVVAVKPYGFFIDLGGV-SGLLHQSMITGGSLRSLREVFNQGDRVKALITEM 370

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 371 DPGRGRIALNTALLEGQPGELLI 393


>gi|260431168|ref|ZP_05785139.1| ribosomal protein S1 [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414996|gb|EEX08255.1| ribosomal protein S1 [Silicibacter lacuscaerulensis ITI-1157]
          Length = 558

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 280 LGSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 339

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 340 DGAKRRVSLGLKQTQRN 356


>gi|290581008|ref|YP_003485400.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           mutans NN2025]
 gi|254997907|dbj|BAH88508.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           mutans NN2025]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           KG++  +  +GAFV       GL+HIS++ T  +      +  G  V V+++D+D+   K
Sbjct: 8   KGKITGIKPYGAFVQLENGSIGLIHISEIKTGYIDNIYQTLSVGQEVLVQVVDYDEYSQK 67

Query: 683 IKLSMKVVDQ 692
             LS++ +++
Sbjct: 68  ASLSLRTLEE 77


>gi|148594064|emb|CAL63601.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|160872895|ref|ZP_02063027.1| ribonuclease PH [Rickettsiella grylli]
 gi|159121694|gb|EDP47032.1| ribonuclease PH [Rickettsiella grylli]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 18/191 (9%)

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY---- 421
           L G+        Y  LP AT   S   A   ++ G     +R I  VL  +         
Sbjct: 51  LKGSNHGWITAEYGMLPRATHTRSDREASRGKQTGRSLEIQRLIGRVLRMSVDLKQLGEN 110

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGV---------PISKPVAGIAMGLVKDGDD 472
           T+ +  ++ ++DG +  A + G+S+AL DA           P    VA +++G+ K    
Sbjct: 111 TIFLDCDVIQADGGTRTAAITGASVALKDALATMKGEMKYNPWCFLVAAVSVGIYKGQ-- 168

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              L D+  +ED    MD  V  T+ G +  +Q   +    S+  +   L  A+ G    
Sbjct: 169 --ALLDLDYEEDSHAEMDMNVIMTEQGKLLEIQATAEKAAFSKQQLNQLLNLAETGIKQC 226

Query: 532 LNEMSKVLSES 542
           + +  +VL E+
Sbjct: 227 VKKQKEVLGEN 237


>gi|84515230|ref|ZP_01002592.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
 gi|84510513|gb|EAQ06968.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 7/81 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVK 673
           PE  ++ +G+V  + +FG F+   G  DG+VH+S L+ +   +  DV+   ++GD V  K
Sbjct: 361 PEGTEV-EGEVKNITEFGLFIGLEGDIDGMVHLSDLTWD--GRGEDVIGDFRKGDMVKAK 417

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           + + D ++ +I LS+K +D +
Sbjct: 418 VAEVDVEKERISLSIKALDSD 438



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  +++G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 334

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DSAKRRVSLGLKQTQRN 351


>gi|257469004|ref|ZP_05633098.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063251|ref|ZP_07927736.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688927|gb|EFS25762.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D D +R +
Sbjct: 654 EGTVRNVVKFGAFVDIGLKNDALLHISEISNKFIDDPSKVLSVGQIIKVRIKDVDKERER 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VALTKK 719


>gi|254465231|ref|ZP_05078642.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
 gi|206686139|gb|EDZ46621.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
          Length = 224

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 25/233 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +S + G  +   GS L   GDT  +   T+    +++    + GT        Y  LP A
Sbjct: 1   MSIETGFTKHAEGSCLIKVGDTHVLCTATI----EDRVPPFIKGTGLGWVTAEYGMLPRA 56

Query: 385 TGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           T    R  A S ++ G      RL  RA+   + + A     + +  ++ ++DG +  A+
Sbjct: 57  TNTRMRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCAS 116

Query: 441 VCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           + G  +A       LM AG     P+  PV+ ++ G+   G   +   D+   ED    +
Sbjct: 117 ITGGWVALRLAVNKLMKAGDVHIDPLLDPVSAVSCGIYA-GQPVL---DLDYPEDSEAGV 172

Query: 490 DFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           D     T SG +  +QM  +    S + M   +  A +G +  L EM K  S+
Sbjct: 173 DGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVE-LAEMQKAASK 224


>gi|206560233|ref|YP_002230997.1| putative transcription accessory protein [Burkholderia cenocepacia
           J2315]
 gi|198036274|emb|CAR52170.1| putative transcription accessory protein [Burkholderia cenocepacia
           J2315]
          Length = 774

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 644 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 701

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       L     R +I L+M++ D
Sbjct: 702 AGQVVKVKVLDVDVKRQRIALTMRLDD 728


>gi|188527836|ref|YP_001910523.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470]
 gi|188144076|gb|ACD48493.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDRG-KIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDRKISLSAK 440



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIK 268


>gi|148594032|emb|CAL63585.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMK 142


>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
 gi|21759413|sp|Q9CRA8|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
           Full=Exosome component 5; AltName: Full=Ribosomal
           RNA-processing protein 46
 gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
 gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
 gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+        ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +  + +AL+DAGVP+     G+   L  DG+
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGN 164


>gi|308183158|ref|YP_003927285.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
 gi|308065343|gb|ADO07235.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDRG-KIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDRKISLSAK 440



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIK 268


>gi|297380231|gb|ADI35118.1| ribosomal protein S1 [Helicobacter pylori v225d]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDRG-KIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDRKISLSAK 440



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V ++  FG FV   G  +GLVH S++S +         KEGD V+VK + +D ++ ++
Sbjct: 205 GVVRQITPFGIFVEVKGV-EGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRL 263

Query: 684 KLSMK 688
            LS+K
Sbjct: 264 SLSIK 268


>gi|261839788|gb|ACX99553.1| 30S ribosomal protein S1 [Helicobacter pylori 52]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIK 268


>gi|261838388|gb|ACX98154.1| 30S ribosomal protein S1 [Helicobacter pylori 51]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLETTEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V++K + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVYIKAIAYDEEKRRLSLSIK 268


>gi|317178641|dbj|BAJ56429.1| 30S ribosomal protein S1 [Helicobacter pylori F30]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSTK 440



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIK 268


>gi|317009664|gb|ADU80244.1| 30S ribosomal protein S1 [Helicobacter pylori India7]
          Length = 556

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 607 REMIRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           R  ++ +T+ P        +V  + +G+V  + DFGAF++  G  DGL+H      ++  
Sbjct: 355 RVSLKQLTNKPFDVFESKHQVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDK 413

Query: 659 KTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
           K  D  K GD + VK+L  + +  KI LS K
Sbjct: 414 KCKDHYKIGDVIKVKILKINKKDKKISLSAK 444



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ +  LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRFSLSIK 272


>gi|150021498|ref|YP_001306852.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Thermosipho melanesiensis BI429]
 gi|149794019|gb|ABR31467.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosipho
           melanesiensis BI429]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++  G+V K+M +G FV+     DG VHI  +   +     D++ EGD V + + + 
Sbjct: 536 KIGEVVSGKVKKIMPYGFFVNLEPGIDGFVHIDDVFWGKRGNIKDIISEGDFVKLVVKEI 595

Query: 678 D-DRGKIKLSMKVV 690
           D +  KI+LS K V
Sbjct: 596 DKENKKIRLSYKEV 609


>gi|308062330|gb|ADO04218.1| 30S ribosomal protein S1 [Helicobacter pylori Cuz20]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDRG-KIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDRKISLSAK 440



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V ++  FG FV   G  +GLVH S++S +         KEGD V+VK + +D ++ ++
Sbjct: 205 GVVRQITPFGIFVEVKGV-EGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRL 263

Query: 684 KLSMK 688
            LS+K
Sbjct: 264 SLSIK 268


>gi|315586944|gb|ADU41325.1| 30S ribosomal protein S1 [Helicobacter pylori 35A]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVCVKAIAYDAEKRRLSLSIK 268


>gi|217032275|ref|ZP_03437772.1| hypothetical protein HPB128_142g23 [Helicobacter pylori B128]
 gi|216946041|gb|EEC24654.1| hypothetical protein HPB128_142g23 [Helicobacter pylori B128]
          Length = 551

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 369 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 427

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 428 NKKDKKISLSAK 439



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 169 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 226

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 227 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 267


>gi|146337793|ref|YP_001202841.1| transcriptional accessory protein [Bradyrhizobium sp. ORS278]
 gi|146190599|emb|CAL74601.1| Putative transcriptional accessory protein containing S1
           RNA-binding domain [Bradyrhizobium sp. ORS278]
          Length = 771

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ITD+ +   I +  V  V  FGAF      +DGL+HIS +S +R+    +VVK 
Sbjct: 640 QEGVEKITDL-KPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSEKRINDPREVVKP 698

Query: 667 G 667
           G
Sbjct: 699 G 699


>gi|78066568|ref|YP_369337.1| RNA binding S1 [Burkholderia sp. 383]
 gi|77967313|gb|ABB08693.1| RNA binding S1 [Burkholderia sp. 383]
          Length = 774

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 607 REMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE +  ++D VP +    +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK
Sbjct: 644 REGVEKVSDLVPGMT--LEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVK 701

Query: 666 EGD-TVWVKLLDFDDRGKIKLSMKVVD 691
            G       +     R +I L+M++ D
Sbjct: 702 AGQVVKVKVIDVDVKRQRIALTMRLDD 728


>gi|298735946|ref|YP_003728471.1| 30S ribosomal protein S1 [Helicobacter pylori B8]
 gi|298355135|emb|CBI66007.1| small subunit ribosomal protein S1 [Helicobacter pylori B8]
          Length = 556

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSAK 444



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|259419235|ref|ZP_05743152.1| protein YhgF [Silicibacter sp. TrichCH4B]
 gi|259345457|gb|EEW57311.1| protein YhgF [Silicibacter sp. TrichCH4B]
          Length = 781

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ITD+ +   + +G V  V  FGAF+     +DGLVH+SQL+ + V    ++VK G
Sbjct: 640 VEEITDL-KPGMVLEGTVTNVAAFGAFIDIGVHQDGLVHVSQLADKFVKDPHEIVKTG 696


>gi|253991850|ref|YP_003043206.1| ribonuclease PH [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253783300|emb|CAQ86465.1| ribonuclease ph [Photorhabdus asymbiotica]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 21/174 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +E VR I+      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E +R G    R +   RL  R++   +       YT+ + 
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAR-GKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKD 469
            ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G+V +
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNKMVEAGKLKENPLKSMVAAVSVGIVDN 169


>gi|255094294|ref|ZP_05323772.1| ribonuclease PH [Clostridium difficile CIP 107932]
          Length = 378

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +       
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTGWINA 62

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            Y+ LP AT +  ++   SR +I        RL  RAI  V+        T+ +  ++ +
Sbjct: 63  EYSMLPRATQQ-RKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQ 121

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+ +A            +PI+  V+ I++G+V    + I + D+ 
Sbjct: 122 ADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHMLDLC 177

Query: 481 GDEDHLGHMDFKVAGTD 497
            +ED    +D  +  TD
Sbjct: 178 YEEDSKAQVDMNIIMTD 194


>gi|212225065|ref|YP_002308301.1| DNA-directed RNA polymerase subunit E' [Thermococcus onnurineus
           NA1]
 gi|212010022|gb|ACJ17404.1| DNA-directed RNA polymerase, subunit E' [Thermococcus onnurineus
           NA1]
          Length = 188

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 12/70 (17%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           PE++++ +G+V+ V  +GAF+   G  DGLVHISQL  + V            +T  ++K
Sbjct: 79  PEMHEVVEGEVIDVAPYGAFIR-IGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILK 137

Query: 666 EGDTVWVKLL 675
            GD V  +++
Sbjct: 138 LGDEVKARII 147


>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+        ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +  + +AL+DAGVP+     G+   L  DG+
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGN 164


>gi|15645027|ref|NP_207197.1| 30S ribosomal protein S1 [Helicobacter pylori 26695]
 gi|2500384|sp|P56008|RS1_HELPY RecName: Full=30S ribosomal protein S1
 gi|2313498|gb|AAD07462.1| ribosomal protein S1 (rps1) [Helicobacter pylori 26695]
          Length = 556

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSAK 444



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|152992317|ref|YP_001358038.1| transcription accessory protein [Sulfurovum sp. NBC37-1]
 gi|151424178|dbj|BAF71681.1| transcription accessory protein [Sulfurovum sp. NBC37-1]
          Length = 698

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 611 RSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           + +TD+  + +  I  G V  + DFGAFV      DG++HISQ+S +R+    +V+    
Sbjct: 615 QGLTDINALREGSIVSGVVRNIADFGAFVDIGLKNDGMIHISQMSQKRIKHPLEVLSVNQ 674

Query: 669 TV-WVKLLDFD-DRGKIKLSMKVV 690
            +  V+++  D ++ K+ LS+K V
Sbjct: 675 YLPRVEVISIDLEKNKVGLSLKDV 698


>gi|219851600|ref|YP_002466032.1| translation initiation factor IF-2 subunit alpha [Methanosphaerula
           palustris E1-9c]
 gi|219545859|gb|ACL16309.1| translation initiation factor 2, alpha subunit [Methanosphaerula
           palustris E1-9c]
          Length = 261

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           D PE  ++    V  V DF AFV       R+GL+ IS+++T  +    D + EG  +  
Sbjct: 5   DWPEEGELVVCTVATVKDFVAFVQLDEYHGREGLIPISEIATGWIKYIRDHISEGQKIVC 64

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
           K+L  D  +G I LS+K V+ +
Sbjct: 65  KVLHVDTQKGHIDLSLKDVNDH 86


>gi|124022484|ref|YP_001016791.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962770|gb|ABM77526.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9303]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +GQVV V  +G F+   G   GL+H S ++   +    +V  +GD V   + + 
Sbjct: 372 EVGQLVEGQVVAVKPYGFFIDLGGV-SGLLHQSMITGGSLRSLREVFNQGDRVKALITEM 430

Query: 678 DD-RGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 431 DPGRGRIALNTALLEGQPGELLI 453


>gi|108563418|ref|YP_627734.1| 30S ribosomal protein S1 [Helicobacter pylori HPAG1]
 gi|107837191|gb|ABF85060.1| ribosomal protein S1 [Helicobacter pylori HPAG1]
          Length = 556

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSAK 444



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEIS-KELLEATEPVLGVVCQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|317471967|ref|ZP_07931299.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316900371|gb|EFV22353.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 493

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFGAFV     +DGLVHISQ++   V    +VV  GD V V +L  D ++ +
Sbjct: 426 KGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFVKHPLEVVSVGDVVDVTVLSVDLEKKR 485

Query: 683 IKLSMK 688
           I+LSM+
Sbjct: 486 IQLSMR 491


>gi|256370590|ref|YP_003108415.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri SMDSEM]
 gi|256009382|gb|ACU52742.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri SMDSEM]
          Length = 648

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFDD 679
           K+  G V  V D+GAFV      +GLVH+S++S  +  K++ + VK G+ V + +L+ + 
Sbjct: 316 KVLIGTVSVVTDYGAFVELFPGVEGLVHVSEMSWHQQLKSAKNFVKIGEKVKILILNLEH 375

Query: 680 RG-KIKLSMK 688
              K+ LSMK
Sbjct: 376 SAQKMSLSMK 385



 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 6/81 (7%)

Query: 619 VNKIYKGQVV-----KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           ++++ KGQ++      +  +G+F+   G  DGL HI+ +S ER+   S+ ++ G  +   
Sbjct: 223 ISQLEKGQILIGIVKNLTHYGSFIDVGGGIDGLCHITDISWERIDHPSEKLEVGQIINFV 282

Query: 674 LLDFDD-RGKIKLSMKVVDQN 693
           +L  D  + +++L +K +  N
Sbjct: 283 ILSIDQIKNRVQLGLKQLQTN 303


>gi|170703039|ref|ZP_02893866.1| RNA binding S1 domain protein [Burkholderia ambifaria IOP40-10]
 gi|170132047|gb|EDT00548.1| RNA binding S1 domain protein [Burkholderia ambifaria IOP40-10]
          Length = 774

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R
Sbjct: 658 LLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKR 717

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 718 QRIALTMRLDDE 729


>gi|149634560|ref|XP_001512041.1| PREDICTED: similar to programmed cell death 11 [Ornithorhynchus
           anatinus]
          Length = 1836

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P D +  V+ +G K  R I+ +  A +   ++G V                 R   D+ +
Sbjct: 675 PNDILHRVLCLGSKRGRNILSRKPALICAAEEGQV----------------ARYFFDI-Q 717

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              ++ G V  +MD+G FV       GL     +S + V KT D    G TV   + D D
Sbjct: 718 PGMLFTGYVTSIMDYGVFVELPFGFTGLSPRVAISDKFVTKTQDHYTVGQTVTALVTDVD 777

Query: 679 -DRGKIKLSMKVVDQNTGKP 697
            ++ ++ LS+++ D N   P
Sbjct: 778 EEKQRMLLSLRLSDCNLRDP 797


>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
 gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 23/166 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTH-----GSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +R+DGR    +R     +     TH     GSS   +G+ +   ++TL T   E  + S 
Sbjct: 12  LRLDGRRWNELRRFECSIN----THPTAADGSSYLEQGNNK---LITLVTGPHEPALRSQ 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA------RRAIHPVLPQTAQFP 420
               +    +  N    A  E S+ G  + R I   + A      +  +  + P+TA   
Sbjct: 65  VNPSKATLTVTVNMTKFAAAERSKTGHKNERRILEMQTALVRTFEKNVMLQLYPRTA--- 121

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             + +   + ++DG    + + G +LAL+DAG+ + + ++GI++GL
Sbjct: 122 --IDVQVHVLQNDGGVLGSMINGITLALIDAGIAMYEYISGISVGL 165


>gi|68171776|ref|ZP_00545121.1| RNA binding S1 [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998801|gb|EAM85508.1| RNA binding S1 [Ehrlichia chaffeensis str. Sapulpa]
          Length = 567

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ I+KG V  + ++G FV      +GLVH+S++S T+     + +   G+ + VK+L  
Sbjct: 321 VDSIHKGIVTSIEEYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSI 380

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ LSMK    N
Sbjct: 381 DTAKSRMSLSMKRCQDN 397



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           I +G+V  +  +G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++ 
Sbjct: 233 IIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIK 292

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K ++++
Sbjct: 293 IDRENKKISLGVKQLEES 310


>gi|253581991|ref|ZP_04859215.1| transcriptional accessory protein [Fusobacterium varium ATCC 27725]
 gi|251836340|gb|EES64877.1| transcriptional accessory protein [Fusobacterium varium ATCC 27725]
          Length = 721

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D D +R +
Sbjct: 654 EGTVRNVVKFGAFVDIGLKNDALLHISEISNKFIDDPSKVLSVGQIIKVRIKDVDKERER 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VALTKK 719


>gi|317177805|dbj|BAJ55594.1| 30S ribosomal protein S1 [Helicobacter pylori F16]
          Length = 552

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVLEGKVATLADFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 429 NKKDKKISLSAK 440



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 170 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVCQITPFGIFVEVKGV-EGLVH 227

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V VK + +D ++ ++ LS+K
Sbjct: 228 YSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIK 268


>gi|307721106|ref|YP_003892246.1| Tex-like protein [Sulfurimonas autotrophica DSM 16294]
 gi|306979199|gb|ADN09234.1| Tex-like protein [Sulfurimonas autotrophica DSM 16294]
          Length = 698

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-DRGK 682
           G V  + DFGAF+      DGL+HIS++ST+RV    +++     +  ++++  D + GK
Sbjct: 633 GIVRNIADFGAFIDIGLKNDGLIHISKMSTKRVKHPLEILTLNQYLPQIEIVSIDYNSGK 692

Query: 683 IKLSM 687
           I LS+
Sbjct: 693 IGLSL 697


>gi|148594060|emb|CAL63599.1| ribosomal protein S1 [Sinorhizobium kostiense]
 gi|148594062|emb|CAL63600.1| ribosomal protein S1 [Sinorhizobium kostiense]
 gi|148594068|emb|CAL63603.1| ribosomal protein S1 [Sinorhizobium kostiense]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMK 142


>gi|115351787|ref|YP_773626.1| RNA-binding S1 domain-containing protein [Burkholderia ambifaria
           AMMD]
 gi|115281775|gb|ABI87292.1| RNA binding S1 domain protein [Burkholderia ambifaria AMMD]
          Length = 774

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R
Sbjct: 658 LLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKR 717

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 718 QRIALTMRLDDE 729


>gi|119191894|ref|XP_001246553.1| hypothetical protein CIMG_00324 [Coccidioides immitis RS]
          Length = 1829

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V KV +FGAFV   G  +  GL H S+++  +V     + ++GD V  K+L  D
Sbjct: 1333 QIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKID 1392

Query: 679  -DRGKIKLSMKV 689
              + +I L +K 
Sbjct: 1393 LKKDQISLGLKA 1404


>gi|58698448|ref|ZP_00373357.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535040|gb|EAL59130.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 485

 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G  V+VK+L  
Sbjct: 244 VDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSI 303

Query: 678 D-DRGKIKLSMK 688
           D  + ++ LSMK
Sbjct: 304 DIAKSRMSLSMK 315


>gi|261327860|emb|CBH10838.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 265

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             P  E++  PP+ I +VIG GG  I+ +  +TGA + I D   V I + +  ++  A  
Sbjct: 18  MNPLQEVIEAPPEFIGHVIGEGGSTIKCLQCETGATITISDGCRVCITADNKEKLSDATS 77

Query: 609 MIRSITDVPEVNKIYKG 625
            +R I +   +N  Y+G
Sbjct: 78  RVRDIINAA-INPDYEG 93


>gi|210135214|ref|YP_002301653.1| 30S ribosomal protein S1 [Helicobacter pylori P12]
 gi|210133182|gb|ACJ08173.1| 30S ribosomal protein S1 [Helicobacter pylori P12]
          Length = 556

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 374 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 432

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 433 NKKDKKISLSAK 444



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|168036805|ref|XP_001770896.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677760|gb|EDQ64226.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1098

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V  + K  V KV  FGAFV   G    L+HIS+LS  RV + S ++ +G  V VK
Sbjct: 929 VGDVVKCTVKKVTSFGAFVELRGI-PALIHISELSWNRVTEPSTILNDGVEVEVK 982


>gi|148643193|ref|YP_001273706.1| translation initiation factor IF-2 subunit alpha
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445424|ref|ZP_03607939.1| hypothetical protein METSMIALI_01062 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350014|ref|ZP_05975431.1| translation initiation factor 2 subunit alpha [Methanobrevibacter
           smithii DSM 2374]
 gi|166226221|sp|A5UMB0|IF2A_METS3 RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|148552210|gb|ABQ87338.1| translation initiation factor aIF-2, alpha subunit
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434989|gb|EEE42154.1| hypothetical protein METSMIALI_01062 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860800|gb|EFC93098.1| translation initiation factor 2 subunit alpha [Methanobrevibacter
           smithii DSM 2374]
          Length = 265

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + P+  ++  G V KV+++GAF        ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRKNQEWPDEGELIIGTVYKVLNYGAFAKLEEYHGKEAFIHISEVSSGWVKNIRDHVRE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV--DQNTGK 696
              +  ++L  +  +G +  S+K +  DQ T K
Sbjct: 61  NQKIVCRVLRVNPKKGHVDASLKRIREDQRTKK 93


>gi|42520896|ref|NP_966811.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410637|gb|AAS14745.1| ribosomal protein S1, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 550

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G  V+VK+L  
Sbjct: 309 VDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSI 368

Query: 678 D-DRGKIKLSMK 688
           D  + ++ LSMK
Sbjct: 369 DIAKSRMSLSMK 380


>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
          Length = 260

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V EDI+   V   +++K  R DGR     RDI  +  L+++  GS+    GDT  +V+V 
Sbjct: 5   VIEDIRKDYVYD-LIEKGKRADGRGFLDFRDIIVERDLIKKADGSTRVQIGDT--VVLVG 61

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI---- 409
           +     E + D+     +   M +   +P A+ E    G P+   I   R+  R I    
Sbjct: 62  VKVEPGEPFSDT---PNKGILMTNAELVPLASPEFES-GPPNENSIELARVVDRGIRGSE 117

Query: 410 ----HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
                 +  +  +  + L I     ++DG+   A   G+  +L++  +P
Sbjct: 118 TIDLEKLCIEEGEKVWMLFIDIHTLDNDGNLVDAAALGAITSLLNVAIP 166


>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
 gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
           RN66]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 33/242 (13%)

Query: 313 RMDGRDSETVRDISAQV--GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           R+DGR    +R IS ++  G    +  S  + +G T+ I  +          +  L+ + 
Sbjct: 17  RIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSIC-------GPIPLLNSSS 69

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR------ 424
           ++   +H NF       +S    P RR+   G+  R      L  T  F   +       
Sbjct: 70  QSGIQLHCNF------RMSPFCTPDRRK--RGKNDRFCTENSLIITRTFESAISEIYVKS 121

Query: 425 ---IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
              I   + E+DG    A +  +SLAL +AG+ +   V    +GL       I L DI  
Sbjct: 122 QIIININVLEADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGR----IPLYDIVQ 177

Query: 482 DE-DHLGH-MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            E D L   M F +  TD  I  + M++    + E+I+ + L+ +     HI   +  +L
Sbjct: 178 AEFDVLKTIMSFAIYSTDENIAPITMELNT-KVDEDILNLLLEHSAAACKHISKILRNIL 236

Query: 540 SE 541
            +
Sbjct: 237 RQ 238


>gi|307133086|ref|YP_003885102.1| ribonuclease PH [Dickeya dadantii 3937]
 gi|306530615|gb|ADN00546.1| ribonuclease PH [Dickeya dadantii 3937]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    ++     L G  +
Sbjct: 1   MRPTGRSAQQIRPLTLTRHYTKHAEGSVLVEFGDTKVLCNATV----EDGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNGMVASGKLKTSPLKGMVAAVSVGIV-NGE---AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDG 195



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 36/230 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYA 69
           RPL L T    + ++G+VL  +G+T VL     +    R LK GQ    +T  Y      
Sbjct: 12  RPLTL-TRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLK-GQGQGWITAEY------ 63

Query: 70  VGKIPGGYLRRESRPTEN------EILISRMIDRSIRPL--FSKCYKNETQVIINVMQHD 121
            G +P     R +R           + I R+I RS+R     +K  +    +  +V+Q D
Sbjct: 64  -GMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQAD 122

Query: 122 LESSPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
             +    ++    + A  L+G+         P +G V    V  +NG+ V +    ED  
Sbjct: 123 GGTRTASITGACVALADALNGMVASGKLKTSPLKGMVAAVSVGIVNGEAVCDLEYVEDSA 182

Query: 173 S-LDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIEA 217
           +  D+ V  T+D   M+E+    E    S D +L  +       + ++ A
Sbjct: 183 AETDMNVVMTEDG-RMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRA 231


>gi|225630820|ref|YP_002727611.1| ribosomal protein S1 [Wolbachia sp. wRi]
 gi|225592801|gb|ACN95820.1| ribosomal protein S1 [Wolbachia sp. wRi]
          Length = 550

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G  V+VK+L  
Sbjct: 309 VDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSI 368

Query: 678 D-DRGKIKLSMK 688
           D  + ++ LSMK
Sbjct: 369 DIAKSRMSLSMK 380


>gi|148594016|emb|CAL63577.1| ribosomal protein S1 [Sinorhizobium xinjiangense]
 gi|148594028|emb|CAL63583.1| ribosomal protein S1 [Sinorhizobium xinjiangense]
 gi|148594038|emb|CAL63588.1| ribosomal protein S1 [Sinorhizobium fredii]
 gi|148594044|emb|CAL63591.1| ribosomal protein S1 [Sinorhizobium fredii]
 gi|148594046|emb|CAL63592.1| ribosomal protein S1 [Sinorhizobium fredii]
 gi|148594066|emb|CAL63602.1| ribosomal protein S1 [Sinorhizobium fredii]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMK 142


>gi|90079215|dbj|BAE89287.1| unnamed protein product [Macaca fascicularis]
          Length = 516

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|116328723|ref|YP_798443.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330620|ref|YP_800338.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121467|gb|ABJ79510.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124309|gb|ABJ75580.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 560

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 617 PEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVK 673
           PEV +  + +G +  +  +GAFV      +GL+HIS ++  E+V+  +  +K+GDTV   
Sbjct: 364 PEVRRGNVLEGVITGITKYGAFVEVENGIEGLIHISDITWDEKVSNPTSQLKKGDTVKYM 423

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD + D  +I   +K + +N
Sbjct: 424 ILDVNLDAQRISCGLKQLMEN 444



 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V  +  FGAFV      +GL+H S+L+ +++  +  D++K+G  V   +LD D +
Sbjct: 284 VIRGTVTSLTKFGAFVELKEGLEGLIHTSELAWSKKPPQPKDILKKGQEVEALVLDIDFK 343

Query: 681 GK-IKLSMKVVDQN 693
            K + L +K +  N
Sbjct: 344 NKRLSLGLKQLQPN 357


>gi|88657606|ref|YP_507222.1| 30S ribosomal protein S1 [Ehrlichia chaffeensis str. Arkansas]
 gi|88599063|gb|ABD44532.1| putative ribosomal protein S1 [Ehrlichia chaffeensis str. Arkansas]
          Length = 567

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ I+KG V  + ++G FV      +GLVH+S++S T+     + +   G+ + VK+L  
Sbjct: 321 VDSIHKGIVTSIEEYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSI 380

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ LSMK    N
Sbjct: 381 DTAKSRMSLSMKRCQDN 397



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           I +G+V  +  +G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++ 
Sbjct: 233 IIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIK 292

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K ++++
Sbjct: 293 IDRENKKISLGVKQLEES 310


>gi|319938274|ref|ZP_08012671.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp. 29_1]
 gi|319806567|gb|EFW03225.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp. 29_1]
          Length = 125

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
           +  +  +GAF        GL+HIS++S + V      V  G+++ VK++D D+R  + KL
Sbjct: 15  ITGIQPYGAFASLPDHSSGLIHISEISDKFVRSVESFVHVGESIRVKVIDIDERTHQAKL 74

Query: 686 SMKVV 690
           S+K +
Sbjct: 75  SLKAM 79


>gi|225631240|ref|ZP_03787929.1| ribosomal protein S1 [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591065|gb|EEH12258.1| ribosomal protein S1 [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 530

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G  V+VK+L  
Sbjct: 309 VDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSI 368

Query: 678 D-DRGKIKLSMK 688
           D  + ++ LSMK
Sbjct: 369 DIAKSRMSLSMK 380


>gi|149722162|ref|XP_001500390.1| PREDICTED: similar to Exosome component 5 [Equus caballus]
          Length = 235

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           +  + +AL+DAGVP+     G+   L  DG
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDG 163


>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
 gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
          Length = 260

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V EDI+   V   +++K  R DGR     RDI  +  L+++  GS+    GDT  +V+V 
Sbjct: 5   VIEDIRKDYVYD-LIEKGKRADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDT--VVLVG 61

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI---- 409
           +     E + D+     +   M +   +P A+ E    G P    I   R+  R I    
Sbjct: 62  VKVEPGEPFPDT---PNKGILMTNAELVPLASPEFES-GPPGENSIELARVVDRGIRGSE 117

Query: 410 ----HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
                 +  +  +  + + I     ++DG+   A   G+ ++L++  +P
Sbjct: 118 TIDLEKLCIEEGEKVWMIFIDIHTLDNDGNLVDAAALGAIMSLLNVAIP 166


>gi|207108733|ref|ZP_03242895.1| 30S ribosomal protein S1 [Helicobacter pylori HPKX_438_CA4C1]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 174 ENHSINISRKRFFEVNDKRQLEVS-KELLEATEPVLGVVRQITPFGIFVEAKGI-EGLVH 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 232 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIK 272


>gi|157827025|ref|YP_001496089.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
 gi|166228311|sp|A8GW25|RNPH_RICB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157802329|gb|ABV79052.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
          Length = 239

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 22/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   +     D      L    R
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASY----DTTVPPFLRNQNR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T + ++  A   ++ G      RL  R +  ++         + I  
Sbjct: 57  GWITAEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +A       LM   +    P+   VA ++ G+ KD    I+ 
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKERILKVNPLINQVAAVSCGIYKDQP--ILD 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +    +
Sbjct: 175 LDYLEDSDAEVDSNFVFAG-NGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQN 233

Query: 537 KVL 539
           +VL
Sbjct: 234 QVL 236


>gi|24378974|ref|NP_720929.1| hypothetical protein SMU.489 [Streptococcus mutans UA159]
 gi|24376863|gb|AAN58235.1|AE014894_12 putative polyribonucleotide nucleotidyltransferase (general stress
           protein 13) [Streptococcus mutans UA159]
          Length = 130

 Score = 40.8 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           KG++  +  +GAFV       GL+HIS++ T  +      +  G  V V+++D+D+   K
Sbjct: 10  KGKITGIKPYGAFVQLENGSIGLIHISEIKTGYIDNIYQTLSVGQEVLVQVVDYDEYSQK 69

Query: 683 IKLSMKVVDQ 692
             LS++ +++
Sbjct: 70  ASLSLRTLEE 79


>gi|317011250|gb|ADU84997.1| 30S ribosomal protein S1 [Helicobacter pylori SouthAfrica7]
          Length = 553

 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 371 QVGDVIEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDAIKVKILKI 429

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 430 NKKDKKISLSAK 441



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++ ++ I+     E+   R++  S  ++ E  +   G V ++  FG FV   G  +GLVH
Sbjct: 171 ENHSINISRKRFFEVNDKRQLEIS-KELLEATEPVLGVVRQITPFGIFVEVKGI-EGLVH 228

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            S++S +         KEGD V+VK + +D ++ ++ LS+K
Sbjct: 229 YSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIK 269


>gi|262276736|ref|ZP_06054529.1| 30S ribosomal protein S1 [alpha proteobacterium HIMB114]
 gi|262223839|gb|EEY74298.1| 30S ribosomal protein S1 [alpha proteobacterium HIMB114]
          Length = 570

 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
           +I D   +   Y+ ++VK+ DFGAF        GL+H S++   ++        K GDTV
Sbjct: 282 TIKDKFSIGNEYEVKIVKLTDFGAFAEMQEGIVGLIHTSEIKHMQKNVNPKSAFKIGDTV 341

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            VKL + D ++ KI LS K
Sbjct: 342 KVKLKEVDTEKRKIALSYK 360


>gi|239982007|ref|ZP_04704531.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074]
          Length = 241

 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R ++ +    +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y+ LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYSMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----GVPISKP--------VAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA     G  I KP        VA +++G+V      
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGS---- 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
             L D+  +ED     D  V  T  G
Sbjct: 173 TPLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|189095324|ref|YP_001936337.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
 gi|157694667|gb|ABV65943.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
 gi|157777898|gb|ABV70084.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T+  +  ++  G +  +  +G FV+  G + GL+HIS++S++R+   S   ++G  + V 
Sbjct: 187 TNFLKPQQVIMGCITDIKSYGLFVNIYGLK-GLLHISEISSQRIDNLSKRFQKGQLIQVT 245

Query: 674 LLDFD-DRGKIKLSMK 688
           +L  + +RG+I L+ K
Sbjct: 246 VLYINLNRGRISLTAK 261


>gi|320036441|gb|EFW18380.1| rRNA biogenesis protein RRP5 [Coccidioides posadasii str. Silveira]
          Length = 1830

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V KV +FGAFV   G  +  GL H S+++  +V     + ++GD V  K+L  D
Sbjct: 1334 QIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKID 1393

Query: 679  -DRGKIKLSMK 688
              + +I L +K
Sbjct: 1394 LKKDQISLGLK 1404


>gi|148594010|emb|CAL63574.1| ribosomal protein S1 [Sinorhizobium americanum]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E E+  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLE-ESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   S+++  G  V V+++  + +  +I L MK
Sbjct: 104 DMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMK 142


>gi|91205422|ref|YP_537777.1| ribonuclease PH [Rickettsia bellii RML369-C]
 gi|122425711|sp|Q1RIX6|RNPH_RICBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91068966|gb|ABE04688.1| Ribonuclease PH [Rickettsia bellii RML369-C]
          Length = 239

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 22/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   +     D      L    R
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASY----DTTVPPFLRNQNR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T + ++  A   ++ G      RL  R +  ++         + I  
Sbjct: 57  GWITAEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +A       LM   +    P+   VA ++ G+ KD    I+ 
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLINQVAAVSCGIYKDQP--ILD 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +    +
Sbjct: 175 LDYLEDSDAEVDSNFVFAG-NGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQN 233

Query: 537 KVL 539
           +VL
Sbjct: 234 QVL 236


>gi|15668619|ref|NP_247417.1| putative RNA-processing protein [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495988|sp|Q57885|Y443_METJA RecName: Full=KH domain-containing protein MJ0443
 gi|1591147|gb|AAB98430.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 227

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE----IEAARE 608
           +EI+ IP D++  +IG  G V + I ++ G K+ ID DGTV I  +   +    +  AR+
Sbjct: 16  IEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDADGTVTIYGTDKQKDPLAVWKARD 75

Query: 609 MIRSI 613
           ++R+I
Sbjct: 76  IVRAI 80


>gi|310778461|ref|YP_003966794.1| Tex-like protein [Ilyobacter polytropus DSM 2926]
 gi|309747784|gb|ADO82446.1| Tex-like protein [Ilyobacter polytropus DSM 2926]
          Length = 721

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+HIS++S   ++  S V+  G  + VK+ D D  R +
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHISEISNTFISDPSKVLSVGQIIKVKIKDVDFQRER 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VTLTKK 719


>gi|227824812|ref|ZP_03989644.1| S1 RNA-binding protein [Acidaminococcus sp. D21]
 gi|226905311|gb|EEH91229.1| S1 RNA-binding protein [Acidaminococcus sp. D21]
          Length = 174

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + +FGAFV     + GL+HIS++S   V    D +     V VK++  
Sbjct: 4   EKGAVVDGIVTGITNFGAFVELPENKVGLIHISEVSNVFVKDVHDFLTVKQKVTVKVVSI 63

Query: 678 DDRGKIKLSMKVV 690
           D++GKI LSMK +
Sbjct: 64  DEKGKIGLSMKAL 76


>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 268

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 6/160 (3%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLS 367
           K+R+DGR    +R   AQ+     + GSS    G+T  +  V     G R D       +
Sbjct: 13  KLRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDA--TGGSA 70

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIV 426
           G+      +  N    A  +  R    S R+        RA       T  +P+ T+ I 
Sbjct: 71  GSSGAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A V   +LAL+DAG+P+   + G   G+
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTAGM 170


>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 19/225 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTH-----GSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +R+DGR    +R   + +     TH     GSS   +G+ +   V+TL     E  + S 
Sbjct: 12  LRLDGRRWNELRRFESAIN----THPHAADGSSYLEQGNNK---VITLVKGPKEPTLKSQ 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL-RI 425
              Q+    +  N    +  E S+    + R +   + A             +P TL  I
Sbjct: 65  MDIQKAILKVTVNITKFSKFERSKSSHKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDI 124

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG-DED 484
              + + DG      + G SLAL+DAG+ +   V+GI++GL     D   L DI+  +E+
Sbjct: 125 EIHVLQQDGGIMGTLLNGISLALIDAGIAMYDYVSGISVGLY----DTTPLLDINSLEEN 180

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGR 528
            +  +   V G    ++ +Q++ KI     EN++ + +  A R R
Sbjct: 181 AMSAVTLGVVGKSEKLSLLQIEDKIPLDRIENVLAIGIAGAHRIR 225


>gi|95929284|ref|ZP_01312028.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95134782|gb|EAT16437.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 399

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDT 669
           +++ D   V   + G+V ++  FGAFV      DGL+HIS+L    R+    +V+KEG  
Sbjct: 280 QNVADNFPVGSEHTGKVSRLAQFGAFVTLEEGIDGLIHISKLGEGRRINHPREVLKEGQE 339

Query: 670 VWVKLLDFDDRGK 682
           + V +   D+  K
Sbjct: 340 LAVTIEKIDEEQK 352


>gi|254526566|ref|ZP_05138618.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
 gi|221537990|gb|EEE40443.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
          Length = 401

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V   S  L   E    ++  +T + E+ ++ +G+V+ V  +G F+   GA  GL+H S L
Sbjct: 269 VNPESRKLVLSEKKASLVSKLTSL-ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSL 326

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +   +    +V +EG+ +   + + D ++G+I L+  +++ + G+ I+
Sbjct: 327 TNGSIRSLREVFREGEMIKALISEIDLEKGRIGLNTALLENSAGELII 374


>gi|172060758|ref|YP_001808410.1| RNA-binding S1 domain-containing protein [Burkholderia ambifaria
           MC40-6]
 gi|171993275|gb|ACB64194.1| RNA binding S1 domain protein [Burkholderia ambifaria MC40-6]
          Length = 813

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R
Sbjct: 697 LLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKR 756

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 757 QRIALTMRLDDE 768


>gi|89099507|ref|ZP_01172383.1| Transcription accessory protein (S1 RNA binding domain) [Bacillus
           sp. NRRL B-14911]
 gi|89085893|gb|EAR65018.1| Transcription accessory protein (S1 RNA binding domain) [Bacillus
           sp. NRRL B-14911]
          Length = 723

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L  + V    D   V +  TVWV  +D   +G
Sbjct: 655 QGTVRNVVDFGAFVDIGVKQDGLVHISKLRKQFVKHPLDVVSVGDVVTVWVDSID-SQKG 713

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 714 RVALTM 719


>gi|307306420|ref|ZP_07586164.1| ribosomal protein S1 [Sinorhizobium meliloti BL225C]
 gi|306902262|gb|EFN32859.1| ribosomal protein S1 [Sinorhizobium meliloti BL225C]
          Length = 568

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|171686100|ref|XP_001907991.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943011|emb|CAP68664.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1779

 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G +VK++D GA V F G   G + +S++S   +    +  +EG T+ V +L FD   K
Sbjct: 635 GTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKEHFREGQTISVYVLSFDPEEK 692



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDT 669
            + +D+ E  +I  G+V KV DFGAF+   G+    GL H S+++   +     +  EGD 
Sbjct: 1288 TFSDLKE-GQIVTGKVRKVEDFGAFIDIDGSDRLSGLCHRSEMADRAIKDAKALYSEGDK 1346

Query: 670  VWVKLLDFDDRGK-IKLSMK 688
            V  ++L  +++ K I L +K
Sbjct: 1347 VKARVLKVEEKTKRINLGLK 1366


>gi|167748502|ref|ZP_02420629.1| hypothetical protein ANACAC_03246 [Anaerostipes caccae DSM 14662]
 gi|167652494|gb|EDR96623.1| hypothetical protein ANACAC_03246 [Anaerostipes caccae DSM 14662]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFGAFV     +DGLVHISQ++   V    +VV  GD V V +L  D ++ +
Sbjct: 646 KGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFVKHPLEVVSVGDVVDVTVLSVDLEKKR 705

Query: 683 IKLSMK 688
           I+LSM+
Sbjct: 706 IQLSMR 711


>gi|115388025|ref|XP_001211518.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195602|gb|EAU37302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1798

 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V KV +FGAF+    + +  GL H S+++ +RV     + +EGD V  K++  D
Sbjct: 1304 QIVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMAEKRVDDARTLFEEGDAVKAKIIKID 1363

Query: 679  -DRGKIKLSMK 688
             ++GK+   +K
Sbjct: 1364 REQGKVSFGLK 1374


>gi|94986185|ref|YP_605549.1| ribonuclease PH [Deinococcus geothermalis DSM 11300]
 gi|94556466|gb|ABF46380.1| RNAse PH [Deinococcus geothermalis DSM 11300]
          Length = 237

 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 25/200 (12%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GRD+ T R +S + G+     GS     G T+ +  V++    +++    + G +     
Sbjct: 8   GRDALTPRPLSVRRGVNPHAPGSVHLQLGRTEILATVSV----EDKPAPHMRGKKEGWLT 63

Query: 376 MHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP AT         +    R EI   RL  RA+   +        TL +  ++  
Sbjct: 64  AEYAMLPRATTDRQARERNLQNGRRHEIQ--RLLGRALRAGIDLRHFRGQTLYVDCDVLV 121

Query: 432 SDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG + +A+V     AL D           +  P+   V  +++GLV  GD+  +  D+ 
Sbjct: 122 ADGGTRVASVLAGYAALHDFADRLIHSGKLSEWPLVHAVGAVSVGLV--GDELRV--DLD 177

Query: 481 GDEDHLGHMDFKVAGTDSGI 500
             ED     D  V  TDSG+
Sbjct: 178 YAEDKAARADLNVVATDSGL 197


>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R+DGR    +R + AQ+     + GSS    G+T AI+    G  E  +   +     
Sbjct: 13  KLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNT-AILCSVHGPAEGRRGDATGGAAG 71

Query: 371 RNDFMMHYNFLPCATGEVSR---MGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIV 426
               ++  +        V R    G   ++      + R A    L  T  +P+ T+ I 
Sbjct: 72  SAGAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHL-HTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A V   +LAL+DAG+P+   + G   G+
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTSGM 170


>gi|254827842|ref|ZP_05232529.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           FSL N3-165]
 gi|258600223|gb|EEW13548.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           FSL N3-165]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|15964008|ref|NP_384361.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021]
 gi|307319307|ref|ZP_07598736.1| ribosomal protein S1 [Sinorhizobium meliloti AK83]
 gi|7404449|sp|P14129|RS1_RHIME RecName: Full=30S ribosomal protein S1
 gi|15073184|emb|CAC41692.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021]
 gi|306895143|gb|EFN25900.1| ribosomal protein S1 [Sinorhizobium meliloti AK83]
          Length = 568

 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|152978104|ref|YP_001343733.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
 gi|171472953|sp|A6VLF1|RNPH_ACTSZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839827|gb|ABR73798.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 34/229 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   D S+     GQ    +T  Y       
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGDTKVLCTATVDESVPRFLKGQGQGWVTAEY------- 63

Query: 71  GKIPGGYLRRESRPTEN------EILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           G +P     R  R           + I R+I RS+R +       E  V ++      + 
Sbjct: 64  GMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQADG 123

Query: 125 SPHVVSMVAASAALM--LSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQGS 173
                S+  A  AL+  ++GL         P +G V    V  ++G  V +    ED  +
Sbjct: 124 GTRTASITGACVALIDAVNGLVDNGTLTVSPLKGLVAAISVGIVDGTPVCDLEYVEDSAA 183

Query: 174 -LDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIEA 217
             D+ V   +D   M+E+    E    S + +L  +      CK + EA
Sbjct: 184 ETDMNVVMMEDG-RMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEA 231



 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM- 391
           +   GS L   GDT+ +   T+    DE     L G  +      Y  LP +T   SRM 
Sbjct: 22  KHAEGSVLVEFGDTKVLCTATV----DESVPRFLKGQGQGWVTAEYGMLPRSTH--SRMQ 75

Query: 392 -----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
                G    R +   RL  R++  ++   A    ++ +  ++ ++DG +  A++ G+ +
Sbjct: 76  REAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQADGGTRTASITGACV 135

Query: 447 ALMDA--GV---------PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
           AL+DA  G+         P+   VA I++G+V    D   + D+   ED     D  V  
Sbjct: 136 ALIDAVNGLVDNGTLTVSPLKGLVAAISVGIV----DGTPVCDLEYVEDSAAETDMNVVM 191

Query: 496 TDSG 499
            + G
Sbjct: 192 MEDG 195


>gi|318041061|ref|ZP_07973017.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0101]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +GQVV V  +G FV   G   GL+H S ++  ++    +V  +GD V   + + 
Sbjct: 315 EVGQLVEGQVVSVKPYGLFVDLGGI-SGLLHQSVITGGQMRDLREVFGQGDRVKALITEL 373

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 374 DPGRGRIALNTALLEGQPGELLI 396


>gi|256372516|ref|YP_003110340.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009100|gb|ACU54667.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 24/228 (10%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR +  +R ++      +   GS L   G T  +  V+L    +E+    L G  R    
Sbjct: 7   GRGAAELRPVAITPDFTEMAPGSVLMRMGRTAVLCTVSL----EERVPAWLRGQGRGWVS 62

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T   +   A   R+ G      RL  RA+  V+       + L +  ++ +
Sbjct: 63  AEYALLPGSTPTRTAREAVRGRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVDCDVLQ 122

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A + G  LAL  A              ++  +A +++G+V DG+  +   D+ 
Sbjct: 123 ADGGTRTAAITGGFLALERALERLAEGGLVQPAALTGRLAAVSVGVV-DGEPLL---DLD 178

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            DED    +D  V  TD G    +Q   +    ++  +V  L+ A+RG
Sbjct: 179 YDEDSRADVDMNVVMTDGGRYVEVQGAAEGAPFAKATLVELLKLAERG 226


>gi|269122678|ref|YP_003310855.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616556|gb|ACZ10924.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
          Length = 681

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 620 NKIYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +K  KGQ+++     ++DF   V      +G+VHIS++S  RV    +    G+ +  K+
Sbjct: 419 DKYQKGQILEREIKEILDFALLVEMEENVEGMVHISEISYRRVNNLKEKFTVGEKIKFKI 478

Query: 675 LDFD-DRGKIKLSMKVV 690
           L+F+ ++ ++ LSMK +
Sbjct: 479 LEFNEEKRRVSLSMKAI 495


>gi|16802939|ref|NP_464424.1| hypothetical protein lmo0898 [Listeria monocytogenes EGD-e]
 gi|224499436|ref|ZP_03667785.1| hypothetical protein LmonF1_06937 [Listeria monocytogenes Finland
           1988]
 gi|224503133|ref|ZP_03671440.1| hypothetical protein LmonFR_11533 [Listeria monocytogenes FSL
           R2-561]
 gi|254832136|ref|ZP_05236791.1| hypothetical protein Lmon1_12349 [Listeria monocytogenes 10403S]
 gi|284801228|ref|YP_003413093.1| hypothetical protein LM5578_0978 [Listeria monocytogenes 08-5578]
 gi|284994370|ref|YP_003416138.1| hypothetical protein LM5923_0932 [Listeria monocytogenes 08-5923]
 gi|16410301|emb|CAC98976.1| lmo0898 [Listeria monocytogenes EGD-e]
 gi|284056790|gb|ADB67731.1| hypothetical protein LM5578_0978 [Listeria monocytogenes 08-5578]
 gi|284059837|gb|ADB70776.1| hypothetical protein LM5923_0932 [Listeria monocytogenes 08-5923]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|327404340|ref|YP_004345178.1| Tex-like protein [Fluviicola taffensis DSM 16823]
 gi|327319848|gb|AEA44340.1| Tex-like protein [Fluviicola taffensis DSM 16823]
          Length = 703

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           IR+I+D+ E   I  G V  V +FGAFV+     +GL+H SQL+   V   +  +   + 
Sbjct: 624 IRTISDLKE-GMILTGIVTNVTNFGAFVNIGIKENGLIHKSQLADVYVEDPTQFISLHEH 682

Query: 670 VWVKLLDFDDRGK 682
           V V++++ D+  K
Sbjct: 683 VEVRVMEIDEARK 695


>gi|255026029|ref|ZP_05298015.1| hypothetical protein LmonocytFSL_06170 [Listeria monocytogenes FSL
           J2-003]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|166363378|ref|YP_001655651.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
 gi|166085751|dbj|BAG00459.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
          Length = 293

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V K+  G VVK+  +G FV  CG   GL+H  Q++           K G  + V + + D
Sbjct: 190 VGKLLSGTVVKLQPYGVFVD-CGGVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVVAEID 248

Query: 679 D-RGKIKLSMKVVDQNTGK 696
           + + +I LS K+++ + G+
Sbjct: 249 EYKNRISLSTKILEAHPGE 267


>gi|159475150|ref|XP_001695686.1| RNA binding protein [Chlamydomonas reinhardtii]
 gi|158275697|gb|EDP01473.1| RNA binding protein [Chlamydomonas reinhardtii]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + +G V  V D+GAF+   G  D  GLVH S+++  R+    +V+K G  V  K+L  D 
Sbjct: 178 VIEGVVTGVEDYGAFIQIKGLPDVFGLVHKSEVTWARILTVDEVLKLGQEVRAKVLSVDV 237

Query: 679 DRGKIKLSMK 688
              ++ LS+K
Sbjct: 238 ANCRLALSIK 247


>gi|150398644|ref|YP_001329111.1| 30S ribosomal protein S1 [Sinorhizobium medicae WSM419]
 gi|150030159|gb|ABR62276.1| ribosomal protein S1 [Sinorhizobium medicae WSM419]
          Length = 568

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +++  G  V V+++  + +  +I L MK
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMK 266


>gi|47094905|ref|ZP_00232519.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898929|ref|ZP_05258853.1| hypothetical protein LmonJ_03910 [Listeria monocytogenes J0161]
 gi|254911583|ref|ZP_05261595.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           J2818]
 gi|254935909|ref|ZP_05267606.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           F6900]
 gi|47016787|gb|EAL07706.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608497|gb|EEW21105.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           F6900]
 gi|293589529|gb|EFF97863.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           J2818]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
 gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
          Length = 296

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +    G  +   GS L   G T+ +   ++     E        T   
Sbjct: 41  REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASV----TEGVPRWRKATGLG 96

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ I  +
Sbjct: 97  WLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCD 156

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 157 VLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 212

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 213 VDLPYEEDSRAEVDMNVVATDTG 235


>gi|37589626|gb|AAH59161.1| Tdrkh protein [Rattus norvegicus]
 gi|149030753|gb|EDL85790.1| rCG51933, isoform CRA_b [Rattus norvegicus]
          Length = 296

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|288932804|ref|YP_003436864.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
 gi|288895052|gb|ADC66589.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
          Length = 691

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +N++Y G+VV + D GAFV       GL+H   L        +  + EGD V VK+    
Sbjct: 115 LNRVYVGKVVSLTDIGAFVQLNKRLKGLIHKKNLK-------NAYLNEGDEVTVKVTSIR 167

Query: 679 DRGKIKLSMKVVD 691
             G+I L +  +D
Sbjct: 168 PSGEIDLELHPMD 180


>gi|163789858|ref|ZP_02184294.1| S1 RNA binding domain protein [Carnobacterium sp. AT7]
 gi|159874798|gb|EDP68866.1| S1 RNA binding domain protein [Carnobacterium sp. AT7]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DG+VHIS+LS   V   ++   V +  TVWV  +D   +G
Sbjct: 656 EGTVRNVVDFGAFVDVGVKQDGMVHISKLSKGYVQHPTNVVSVGDVVTVWVDNVDL-KKG 714

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 715 RIALTM 720


>gi|134295829|ref|YP_001119564.1| RNA-binding S1 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134138986|gb|ABO54729.1| RNA binding S1 domain protein [Burkholderia vietnamiensis G4]
          Length = 775

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R
Sbjct: 658 LLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKR 717

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 718 QRIALTMRLDDE 729


>gi|83594970|ref|YP_428722.1| ribonuclease PH [Rhodospirillum rubrum ATCC 11170]
 gi|123525443|sp|Q2RN60|RNPH_RHORT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83577884|gb|ABC24435.1| RNAse PH [Rhodospirillum rubrum ATCC 11170]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 26/249 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  +++R I  + G  +   GS +   GDT  +   ++    +E+    + G  +
Sbjct: 1   MRPSGRAVDSLRSIVLEPGYSKHAEGSCMARFGDTHVLCTASI----EERVPGWMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   R+ G      RL  R++  V          +R+  
Sbjct: 57  GWVTAEYGMLPRSTHTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL  A       G+    P++  VA ++ GL     D + +
Sbjct: 117 DVIQADGGTRTAAITGSWVALYQALARFEKLGLGALPPLTDHVAAVSCGLC----DGVAV 172

Query: 477 SDISGDEDHLGHMD--FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
            D+   ED     D  F + GT  GI  +Q   +    ++   +  L  A++G   ++  
Sbjct: 173 LDLDYAEDSTAQADANFVLTGT-GGIVEIQGTAETSPFAQAQFMELLALAQKGITELVAL 231

Query: 535 MSKVLSESR 543
               L+  R
Sbjct: 232 QKAALASLR 240


>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
 gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
          Length = 242

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 9/200 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R + A++G+++  +GS++F  G+T+ I  V  G  E       L    R
Sbjct: 9   LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAV-YGPHEVHNRSQQL--WDR 65

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 Y+    +TG+  R G  +RR      + R+ +   +         + I  ++ +
Sbjct: 66  ALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQ 125

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +  A +  ++LAL +AG+P+   VA  A G +        L D++  ED  G  D 
Sbjct: 126 ADGGTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTP----LLDLNYVEDSGGGPDV 181

Query: 492 KVAGTDS--GITAMQMDMKI 509
            VA       ++ +QMD K+
Sbjct: 182 TVALFPKVDKVSLLQMDSKL 201


>gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
 gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
          Length = 256

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 27/205 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR- 371
           R DGR ++ +R IS    +   + GS L   G+T+ I    +     E+ + +    Q+ 
Sbjct: 3   RNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMI-----EESIPNWMKFQKV 57

Query: 372 --NDFMMHYNFLPCATGE-VSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP +T E   R  A  R   R +   RL  R++  V+      P TL I
Sbjct: 58  PGGWLTAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCI 117

Query: 426 VSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +A       L++  +    PI + VA +++G+V +G+  +
Sbjct: 118 DCDVLQADGGTRTASITGACVAASLAVEKLIEKKLLTKSPIKQLVAAVSVGVV-NGEPML 176

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
              D++  ED    +D  +  T +G
Sbjct: 177 ---DLNYLEDKDASVDMNLVMTANG 198


>gi|291536097|emb|CBL09209.1| Ribosomal protein S1 [Roseburia intestinalis M50/1]
          Length = 237

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++E  +E+   I    +V  + +G V  V DFGAF+   GA DGL+HIS++S  RV
Sbjct: 180 KLEQQKELFAKI----KVGDVMEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRV 230


>gi|18976628|ref|NP_577985.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus DSM
           3638]
 gi|18892197|gb|AAL80380.1| DNA-directed RNA polymerase, subunit e' [Pyrococcus furiosus DSM
           3638]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           P+++++ +G V  VM FGAF+   G  DGLVHISQL  + V 
Sbjct: 79  PKIHEVVEGYVADVMPFGAFIR-IGPIDGLVHISQLMDDYVV 119


>gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1]
          Length = 243

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 29/206 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ +    +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASF----TEGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP AT   +R    S R +IG       RL  R++  V+   A    T+ + 
Sbjct: 59  WVTAEYAMLPRATN--TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLD 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL DA               P++  V+ +++G+V      
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGG---- 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           I L D+  +ED     D  V  T  G
Sbjct: 173 IPLLDLCYEEDVRAETDMNVVCTGDG 198


>gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977]
 gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 33/206 (16%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R +      L    GS+L   G T+ +V V+L           + G +  
Sbjct: 3   RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSL----TPGVPRHMQGKRSG 58

Query: 373 DFMMHYNFLPCAT-----GEVSRMGAPSRREIGH--GRLARRAIH-PVLPQTAQFPYTLR 424
             M  YN LP +T      E  ++G  + +E+    GR  R A+   +LP       T+ 
Sbjct: 59  WLMAEYNLLPRSTESRTQRERFKLGGRT-QEVQRFLGRAFRAAVDLDLLPNQ-----TIV 112

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           + +++ ++DG + +A + G   AL+ A             P+++  A I++G    GD+ 
Sbjct: 113 VDADVIQADGGTRVAAILGGYAALVQAFDALVRAGRLDDWPLTE-FAAISLGWAG-GDE- 169

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
            +L D+   ED   H D  V GT  G
Sbjct: 170 -VLVDLDAREDDRVHADLTVVGTAEG 194


>gi|226223517|ref|YP_002757624.1| hypothetical protein Lm4b_00916 [Listeria monocytogenes Clip81459]
 gi|254823833|ref|ZP_05228834.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J1-194]
 gi|254852392|ref|ZP_05241740.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL R2-503]
 gi|254931281|ref|ZP_05264640.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           HPB2262]
 gi|254993532|ref|ZP_05275722.1| hypothetical protein LmonocytoFSL_11467 [Listeria monocytogenes FSL
           J2-064]
 gi|255521162|ref|ZP_05388399.1| hypothetical protein LmonocFSL_08046 [Listeria monocytogenes FSL
           J1-175]
 gi|300764107|ref|ZP_07074102.1| hypothetical protein LMHG_10081 [Listeria monocytogenes FSL N1-017]
 gi|225875979|emb|CAS04683.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605698|gb|EEW18306.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL R2-503]
 gi|293582830|gb|EFF94862.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           HPB2262]
 gi|293593056|gb|EFG00817.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J1-194]
 gi|300515097|gb|EFK42149.1| hypothetical protein LMHG_10081 [Listeria monocytogenes FSL N1-017]
 gi|332311305|gb|EGJ24400.1| S1 RNA binding domain protein [Listeria monocytogenes str. Scott A]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|317494714|ref|ZP_07953126.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917316|gb|EFV38663.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 27/199 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +E +R +       +   GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPEGRTAEQIRPLKLTRHYTKHAEGSVLVEFGETKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G    R +   RL  R++   +       +T+ +
Sbjct: 57  GWVTAEYGMLPRSTH--SRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITL 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V    D  
Sbjct: 115 DCDVIQADGGTRTASITGACVALADALNALVAAGKLKANPMKGMVAAVSVGIV----DGQ 170

Query: 475 ILSDISGDEDHLGHMDFKV 493
            + D+   ED     D  V
Sbjct: 171 AVCDLEYVEDSAAETDMNV 189


>gi|126731017|ref|ZP_01746825.1| 30S ribosomal protein S1 [Sagittula stellata E-37]
 gi|126708319|gb|EBA07377.1| 30S ribosomal protein S1 [Sagittula stellata E-37]
          Length = 554

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 334

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DPTKRRVSLGLKQTMRN 351



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGKLQEGDSV-DGVVKNITEYGAFVDLGGV-DGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++
Sbjct: 221 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQED 264


>gi|15789766|ref|NP_279590.1| translation initiation factor IF-2 subunit alpha [Halobacterium sp.
           NRC-1]
 gi|169235483|ref|YP_001688683.1| translation initiation factor IF-2 subunit alpha [Halobacterium
           salinarum R1]
 gi|20532140|sp|Q9HRT8|IF2A_HALSA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|229847551|sp|B0R3M0|IF2A_HALS3 RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|10580148|gb|AAG19070.1| translation initiation factor eIF-2 subunit alpha [Halobacterium
           sp. NRC-1]
 gi|167726549|emb|CAP13334.1| translation initiation factor aIF-2 alpha subunit [Halobacterium
           salinarum R1]
          Length = 267

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V  + DFG FV     +D  GLVH+S++++  +    D V E  TV  K+
Sbjct: 7   PDEGELVVGKVDDIEDFGVFVDLEQYQDKRGLVHVSEVASGWIKNVRDHVNEDQTVVAKV 66

Query: 675 LDFDDRG-KIKLSMKVVDQN 693
           L  D+   +I LS+K V+ +
Sbjct: 67  LGVDESAQQIDLSLKDVNDH 86


>gi|121997764|ref|YP_001002551.1| ribonuclease PH [Halorhodospira halophila SL1]
 gi|166228286|sp|A1WVN7|RNPH_HALHL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|121589169|gb|ABM61749.1| RNAse PH [Halorhodospira halophila SL1]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS Q    +   GS L   GDT+ +   ++  R        L G  R
Sbjct: 1   MRPSGRRADELRPISIQRQFTKHAEGSVLIGFGDTRVLCTASVEAR----VPPWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  R++   +   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA             P+   VA +++G+ + G+  +  
Sbjct: 117 DVLQADGGTRTAAITGAFVALTDALEGLVRQRALPASPLHGQVASVSVGVYR-GEPVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V   D+G
Sbjct: 174 -DLDYAEDGEAETDMNVVMNDAG 195


>gi|146278691|ref|YP_001168850.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17025]
 gi|166228309|sp|A4WVY1|RNPH_RHOS5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145556932|gb|ABP71545.1| RNAse PH [Rhodobacter sphaeroides ATCC 17025]
          Length = 237

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKPV 459
           ++ ++DG +  A++ G  +A       L+ AG+ +S P+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIVVSDPI 155


>gi|47092106|ref|ZP_00229899.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47019546|gb|EAL10286.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|328467054|gb|EGF38149.1| hypothetical protein LM1816_06915 [Listeria monocytogenes 1816]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|315274597|ref|ZP_07869468.1| general stress protein 13 [Listeria marthii FSL S4-120]
 gi|313615773|gb|EFR89030.1| general stress protein 13 [Listeria marthii FSL S4-120]
          Length = 60

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++ +
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTQ 52


>gi|315281580|ref|ZP_07870181.1| protein YhgF [Listeria marthii FSL S4-120]
 gi|313614789|gb|EFR88332.1| protein YhgF [Listeria marthii FSL S4-120]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|291288842|ref|YP_003505658.1| hydroxymethylbutenyl pyrophosphate reductase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290886002|gb|ADD69702.1| hydroxymethylbutenyl pyrophosphate reductase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 843

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           T  PE + I KG +  + DFG FV F    DGL+    +S T+      ++ KEGD +  
Sbjct: 644 TKHPEGSAI-KGTIKSITDFGIFVDFGEFLDGLIRKKDISWTDEPENLDELYKEGDEIEA 702

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           K+L  D ++ +I L +K ++ N  + I
Sbjct: 703 KVLKIDAEKERISLGVKQLETNPWREI 729



 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +AS  L  I++  +  +      E  +I KG V  +  +GAF++F GA DG +  + ++ 
Sbjct: 455 LASRKLQMIQSIEKEKKEFFSQIEEGQILKGSVKTIKHYGAFMNF-GAVDGFLRKNNIAW 513

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             V   +  ++EGD + VK+L+ D +  K+++ +K
Sbjct: 514 GVVKHPNQYIEEGDELEVKILNIDFEEEKLEVGLK 548


>gi|290892911|ref|ZP_06555901.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J2-071]
 gi|290557487|gb|EFD91011.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J2-071]
          Length = 725

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
          Length = 248

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 8/205 (3%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R+DGR    +R + AQ+     + GSS    G+T AI+    G  E  +   +     
Sbjct: 13  KLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNT-AILCSVHGPAEGRRGDATGGAAG 71

Query: 371 RNDFMMHYNFLPCATGEVSR---MGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIV 426
               ++  +        V R    G   ++      + R A    L  T  +P+ T+ I 
Sbjct: 72  SAGAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHL-HTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
             +  SDGS   A V   +LAL+DAG+P+   + G      +D ++  +   +       
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTASTPRDPNNDTLDPLLDLSLPEE 190

Query: 487 GHMDFKVAGTDSG--ITAMQMDMKI 509
             + F   GT +   +  + MD K+
Sbjct: 191 QELPFLTVGTTTAMKVAMLTMDSKV 215


>gi|254462349|ref|ZP_05075765.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2083]
 gi|206678938|gb|EDZ43425.1| ribosomal protein S1 [Rhodobacteraceae bacterium HTCC2083]
          Length = 557

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 167 GNIVVSRRAILEESRAEQRAEVIGNLTE-GQAVDGVVKNITEYGAFVDLGGV-DGLLHVT 224

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++
Sbjct: 225 DMAWRRVNHPSEILTIGETVKVQVIKINKETHRISLGMKQLQED 268



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  +
Sbjct: 283 HTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGTK 342

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K   +N
Sbjct: 343 RRVSLGLKQTQRN 355


>gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2]
 gi|123345879|sp|Q0VT66|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R++S          GS L   G+T+ +   ++    ++     L G  +
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASV----EDGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T    G  +  G    R +   RL  R++   +   A    T+ +  
Sbjct: 57  GWLTAEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P++  V  +++G+ KD      +
Sbjct: 117 DVLQADGGTRTASISGACVALVDAFTYLLETKKIKNDPLTGLVGAVSVGMYKD----TPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T  G
Sbjct: 173 LDLDYAEDSNAGTDMNVVMTQQG 195


>gi|328886475|emb|CCA59714.1| Transcription accessory protein [Streptomyces venezuelae ATCC
           10712]
          Length = 807

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 29/124 (23%)

Query: 573 VIRGIVEQTGAKVN--IDDDGTVK---------------IASSSLAEIEAA----REMIR 611
           V+R +V+ TG +V   I D GT++                 +  L E+E      R   R
Sbjct: 575 VVRRMVKATGGEVAALIGDTGTLRSLRPDDFVDETFGLPTVTDILRELEKPGRDPRPAFR 634

Query: 612 SITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + T    V KI         +G V  V  FGAFV     +DGLVH+S +S   V    DV
Sbjct: 635 TATFAEGVEKIGDLASGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVKDPRDV 694

Query: 664 VKEG 667
           VK G
Sbjct: 695 VKPG 698


>gi|313609765|gb|EFR85224.1| protein YhgF [Listeria monocytogenes FSL F2-208]
          Length = 725

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|254470844|ref|ZP_05084247.1| ribosomal protein S1 [Pseudovibrio sp. JE062]
 gi|211959986|gb|EEA95183.1| ribosomal protein S1 [Pseudovibrio sp. JE062]
          Length = 564

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+++S+    E  +  +G V  + D+GAFV   G  DGL+H++ ++  R+   S+V
Sbjct: 186 EQRSELVQSL----EEGQTVEGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRINHPSEV 240

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV V+++  + +  +I L MK
Sbjct: 241 LTIGQTVKVQIVRVNQETHRISLGMK 266



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           +N   +G+V    +FG F+   G  DG+VH+S L   R   +  +  K+GD V   +LD 
Sbjct: 369 INATVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEYKKGDVVKAVVLDV 428

Query: 678 D-DRGKIKLSMKVVDQN 693
           D ++ +I L +K +D +
Sbjct: 429 DVEKERISLGIKQLDAD 445



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V +L+ D  +
Sbjct: 286 FSGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVVILEVDASK 345

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 346 RRISLGLKQTLQN 358


>gi|148706781|gb|EDL38728.1| mCG5013, isoform CRA_a [Mus musculus]
          Length = 240

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 63  LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 122

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 123 TQKEVAAAKHLI 134


>gi|148642257|ref|YP_001272770.1| DNA-directed RNA polymerase subunit E' [Methanobrevibacter smithii
           ATCC 35061]
 gi|222444570|ref|ZP_03607085.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350890|ref|ZP_05976307.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
 gi|148551274|gb|ABQ86402.1| DNA-dependent RNA polymerase, subunit E, RpoE [Methanobrevibacter
           smithii ATCC 35061]
 gi|222434135|gb|EEE41300.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860228|gb|EFC92526.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
          Length = 185

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 12/70 (17%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----------AKTSD-VVK 665
           PE  ++  G+V+++ +FGAFV   G  DGLVH+SQ++ + +          AK S+  + 
Sbjct: 76  PEQQEVIDGEVIEIAEFGAFVR-IGPMDGLVHVSQVTDDYINYDSKRGALLAKESNKTLD 134

Query: 666 EGDTVWVKLL 675
           EGD V  +++
Sbjct: 135 EGDLVRTRIV 144


>gi|13472550|ref|NP_104117.1| hypothetical protein mll2881 [Mesorhizobium loti MAFF303099]
 gi|14023296|dbj|BAB49903.1| mll2881 [Mesorhizobium loti MAFF303099]
          Length = 774

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +G V  V  FGAFV     +DGLVH+SQL+   +    +VVK G
Sbjct: 655 LLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFIKDAHEVVKAG 700


>gi|149030754|gb|EDL85791.1| rCG51933, isoform CRA_c [Rattus norvegicus]
          Length = 240

 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 63  LTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 122

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 123 TQKEVAAAKHLI 134


>gi|46907130|ref|YP_013519.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46880397|gb|AAT03696.1| S1 RNA binding domain protein [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 725

 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 653 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|11465811|ref|NP_053955.1| ribosomal protein S1 [Porphyra purpurea]
 gi|1710701|sp|P51345|RR1_PORPU RecName: Full=30S ribosomal protein S1, chloroplastic
 gi|1276811|gb|AAC08231.1| 30S ribosomal protein S1 [Porphyra purpurea]
          Length = 263

 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G + ++  +G F+   G   GLVHIS+++ ++V +     K GDT+   ++  D
Sbjct: 191 VGNIIEGVINQITPYGLFIK-AGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVD 249

Query: 679 DR-GKIKLSMK 688
            + G++ LSMK
Sbjct: 250 KKQGRLSLSMK 260


>gi|171320451|ref|ZP_02909484.1| RNA binding S1 domain protein [Burkholderia ambifaria MEX-5]
 gi|171094311|gb|EDT39385.1| RNA binding S1 domain protein [Burkholderia ambifaria MEX-5]
          Length = 774

 Score = 40.4 bits (93), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R
Sbjct: 658 LLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKR 717

Query: 681 GKIKLSMKVVDQ 692
            +I L+M++ D+
Sbjct: 718 QRIALTMRLDDE 729


>gi|254670670|emb|CBA06757.1| ribonuclease PH [Neisseria meningitidis alpha153]
 gi|261392252|emb|CAX49772.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis 8013]
 gi|325204479|gb|ADY99932.1| ribonuclease PH [Neisseria meningitidis M01-240355]
          Length = 242

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L    GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|254509538|ref|ZP_05121605.1| ribosomal protein S1 [Rhodobacteraceae bacterium KLH11]
 gi|221533249|gb|EEE36237.1| ribosomal protein S1 [Rhodobacteraceae bacterium KLH11]
          Length = 553

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  +++G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 334

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DGAKRRVSLGLKQTQRN 351


>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
          Length = 233

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 25  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 78

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+        ++ +V ++    GS     
Sbjct: 79  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACC 131

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +  + +AL+DAGVP+     G+   L  DG+
Sbjct: 132 LNAACMALVDAGVPMRALFCGVTCALDPDGN 162


>gi|15677352|ref|NP_274507.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|21759417|sp|Q9JYN5|RNPH_NEIMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|7226741|gb|AAF41855.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|316986046|gb|EFV64983.1| ribonuclease PH [Neisseria meningitidis H44/76]
 gi|325140644|gb|EGC63162.1| ribonuclease PH [Neisseria meningitidis CU385]
 gi|325199896|gb|ADY95351.1| ribonuclease PH [Neisseria meningitidis H44/76]
          Length = 242

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
            Y  LP +T   SRM      G  S R     RL  R++  V+         + I  ++ 
Sbjct: 65  EYGMLPAST--ASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVI 122

Query: 431 ESDGSSSMATVCGSSLAL 448
           ++DG +  A++ G+ +AL
Sbjct: 123 QADGGTRTASITGAFVAL 140


>gi|227824088|ref|YP_002828061.1| 30S ribosomal protein S1 [Sinorhizobium fredii NGR234]
 gi|227343090|gb|ACP27308.1| 30S ribosomal protein S1 [Sinorhizobium fredii NGR234]
          Length = 568

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILSIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|212640210|ref|YP_002316730.1| putative RNA binding protein (contains ribosomal protein S1 domain)
           [Anoxybacillus flavithermus WK1]
 gi|212561690|gb|ACJ34745.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Anoxybacillus flavithermus WK1]
          Length = 167

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  +  +G FV       GL+HIS+++   V    D V  G++V VK++  D++ 
Sbjct: 61  IVTGVVTGIQPYGIFVSLDEQTQGLIHISEITDGYVKNIYDYVDVGESVRVKIIAIDEKT 120

Query: 682 K-IKLSMKVVDQN 693
           K I LS++ VD +
Sbjct: 121 KRISLSLRDVDHD 133


>gi|207093018|ref|ZP_03240805.1| 30S ribosomal protein S1 [Helicobacter pylori HPKX_438_AG0C1]
          Length = 369

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 187 QVGDVLEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 245

Query: 678 DDR-GKIKLSMK 688
           + +  KI LS K
Sbjct: 246 NKKDKKISLSAK 257



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++E ++E++ +   V        G V ++  FG FV   G  +GLVH S++S +      
Sbjct: 6   QLEVSKELLEATEPVL-------GVVRQITPFGIFVEAKGI-EGLVHYSEISHKGPVNPE 57

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              KEGD V+VK + +D ++ ++ LS+K
Sbjct: 58  KYYKEGDEVYVKAIAYDAEKRRLSLSIK 85


>gi|117617491|ref|YP_858647.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117558898|gb|ABK35846.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 27/204 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +  +R ++      +   GS L   G+T+ +   ++    D      L G  + 
Sbjct: 22  RPSDRTAAQLRPVTITRHFTKHAEGSVLVEFGNTRVLCTASV----DTSVPRFLKGKNQG 77

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +T   SRM      G  S R +   RL  R++   +  TA   +++ + 
Sbjct: 78  WVTAEYGMLPRSTH--SRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVD 135

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +AL+DA             P+ + +A +++G+ + G+    
Sbjct: 136 CDVLQADGGTRTAAITGACVALVDALNWMVEKGMLKQSPLKQMIAAVSVGMYQ-GE---A 191

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T+ G
Sbjct: 192 ICDLEYIEDSAAETDMNVVMTEDG 215


>gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
 gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
          Length = 254

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I+   G  ++  GS+L   G+T+ +   +      E     L G    
Sbjct: 10  RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASF----TEGVPRWLKGEGTG 65

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E ++  +   R  G      RL  R++  V+  +A    T+ +  +
Sbjct: 66  WVTAEYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCD 125

Query: 429 ITESDGSSSMATVCGSSLALMDA------------GVPISK-PVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL +A            G  + K  VA +++G+V    D + 
Sbjct: 126 VLDADGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIV----DGVP 181

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T +G
Sbjct: 182 VLDLPYVEDVKAETDMNVVVTGAG 205


>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 278

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++ + K+R DGR  E  R I  + G++ +  GS+     +T+ +V V    RE    
Sbjct: 32  LREILDNNKIRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSV-FEPRE---- 86

Query: 363 VDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP- 420
           +  LS  T   +    + F P   G   +       E     + +R++ P + +  +FP 
Sbjct: 87  IPRLSEFTPNGEIYCEFKFAP-FYGLERKGHIMDLEEKDLSIILKRSLEPAVCR-HEFPN 144

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           + + + + + ++DGS   A +  + LAL DAG+P+   +  + +G+  D    +I  D +
Sbjct: 145 FQVDVYALLLDNDGSCLSAAITAAGLALADAGIPMYDILTSVTLGIHND----MIFIDPN 200

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
            +E+      FK   ++ GI ++    ++  ++E
Sbjct: 201 FEEEKFCKSFFKNKTSEIGIISLSYMPEMAQVTE 234


>gi|170078680|ref|YP_001735318.1| ribonuclease PH [Synechococcus sp. PCC 7002]
 gi|169886349|gb|ACB00063.1| ribonuclease PH [Synechococcus sp. PCC 7002]
          Length = 240

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 25/196 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R  + +R    ++   +    S L   GDT+ +  V++    +E     L  + + 
Sbjct: 5   RLDNRFFDQLRPFKFELDFTKFAQASVLTSCGDTKVLCTVSV----EEGVPPFLRDSGQG 60

Query: 373 DFMMHYNFLPCATGEVSR---MGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  +P AT E  R   M    R +EI   RL  R++   +   A    T+ I ++
Sbjct: 61  WLTAEYRMMPGATPERQRREFMKLSGRTQEIQ--RLIGRSLRAAIDLKALGERTITIDAD 118

Query: 429 ITESDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +    + G  + L       + AG+    PI  PVA I++GL+  G  ++   
Sbjct: 119 VLQADGGTRTTAITGGYVGLAIACERLVKAGILGKSPIIAPVAAISVGLIA-GQAYL--- 174

Query: 478 DISGDEDHLGHMDFKV 493
           D++  ED    +DF V
Sbjct: 175 DLNYLEDVAADVDFNV 190


>gi|162147173|ref|YP_001601634.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785750|emb|CAP55321.1| putative Ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 275

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 19/174 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  + +R IS + G      GS+L   G T+ +   T+ +R        L G  +
Sbjct: 30  TRPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESR----VPPFLRGQGK 85

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    G  +  G  S R     RL  R++  V+   A    ++ +  
Sbjct: 86  GWVTAEYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDC 145

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDG 470
           ++  +DG +  A++ G+ +AL           + A +P++  VA ++ GL   G
Sbjct: 146 DVLNADGGTRCASITGAWVALRLALETLVRNRVLARLPLTAQVAAVSCGLTGAG 199


>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    RL R     V+        ++ +V ++    GS     
Sbjct: 81  RP-------KIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +  + +AL+DAGVP+     G+   L  DG+
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDPDGN 164


>gi|302348935|ref|YP_003816573.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
 gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
          Length = 280

 Score = 40.4 bits (93), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 14/156 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  K VR D RD  T R++S QVG++ +  GS+    G+TQ +V V L     E  +   
Sbjct: 22  LYKKGVRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGVKL-----EVGIPYR 76

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQTAQ 418
                    ++    P A+      G P    +   R+  R++          ++ +  +
Sbjct: 77  DTPNEGVLQVNSELTPVAS-PTFEPGPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGE 135

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
             + L I   + + DG+   A++ G   ALM+  VP
Sbjct: 136 KAWVLWIDIYVLDYDGNYFDASMLGVMAALMNTKVP 171


>gi|149184525|ref|ZP_01862843.1| RNase PH [Erythrobacter sp. SD-21]
 gi|148831845|gb|EDL50278.1| RNase PH [Erythrobacter sp. SD-21]
          Length = 238

 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ + G  +   GS L   G+T+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLISFGETKVLCTASV----EERIPPWLRGRGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT    +  A   ++ G      RL  R++  V+         + +  
Sbjct: 57  GWVTGEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVK 468
           ++ ++DG +  A++ G+ +A       LM +G     PI+  VA ++ G+ K
Sbjct: 117 DVIQADGGTRTASISGAWVALRLAVNELMKSGDLVEDPITAKVAAVSCGIYK 168


>gi|84489433|ref|YP_447665.1| DNA-directed RNA polymerase subunit E' [Methanosphaera stadtmanae
           DSM 3091]
 gi|84372752|gb|ABC57022.1| RpoE1 [Methanosphaera stadtmanae DSM 3091]
          Length = 185

 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           P ++++  G+V+++++FGAFV   G  DGLVH+SQ++ + +
Sbjct: 79  PMLHEVIDGEVIEIIEFGAFVR-IGPMDGLVHVSQITNDYI 118


>gi|157427876|ref|NP_001098845.1| tudor and KH domain-containing protein [Bos taurus]
 gi|148744218|gb|AAI42177.1| TDRKH protein [Bos taurus]
 gi|296489558|gb|DAA31671.1| tudor and KH domain containing [Bos taurus]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AA+ +I
Sbjct: 179 TQKEVAAAKHLI 190


>gi|221135142|ref|ZP_03561445.1| RNase PH (tRNA nucleotidyltransferase) [Glaciecola sp. HTCC2999]
          Length = 238

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ I   T+    +E     + G   
Sbjct: 1   MRPSGRTANQIRPVTITRHFTCHAEGSVLVEFGNTKVICNATV----EEGVPRFMKGKGE 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT    G  +  G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYSMLPRATHSRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA       G+    P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTHMRSKGILKANPLKHMIAALSVGVYKGN----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED     D  V  T++G
Sbjct: 173 ADLEYLEDSDAETDMNVVMTETG 195


>gi|84500258|ref|ZP_00998524.1| 30S ribosomal protein S1 [Oceanicola batsensis HTCC2597]
 gi|84392192|gb|EAQ04460.1| 30S ribosomal protein S1 [Oceanicola batsensis HTCC2597]
          Length = 553

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +++G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LSSVHQGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 334

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DGAKRRVSLGLKQTQRN 351



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + +G+V  + +FG FV   G  DG+VH+S LS  ER        ++GD V   + + D +
Sbjct: 365 VVEGEVKNITEFGLFVGLDGDIDGMVHLSDLSWDERGEDAIQSYRKGDMVQAVVSEVDTE 424

Query: 680 RGKIKLSMKVV 690
           + +I LS+K V
Sbjct: 425 KERISLSIKNV 435


>gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1]
 gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32]
 gi|166228319|sp|A4Y2K5|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228321|sp|A1RET8|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1]
 gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32]
 gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200]
          Length = 237

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASF----TEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G  S R     RL  RA+   +   A    T+ I
Sbjct: 57  GWVTAEYGMLPRSTH--SRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------GVPISKP----VAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+DA       G+  S P    +A +++G+ K G+   
Sbjct: 115 DCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYK-GE--- 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            +SD+   ED     D  V  T++G
Sbjct: 171 AISDLEYIEDSAAETDMNVVMTETG 195


>gi|294496353|ref|YP_003542846.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanohalophilus mahii DSM 5219]
 gi|292667352|gb|ADE37201.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanohalophilus mahii DSM 5219]
          Length = 265

 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV       V  V DFGA+        ++G +HIS++    V    D V+EG  +  K+
Sbjct: 7   PEVGDFVVCAVKNVTDFGAYTTLEEYDGKEGFIHISEIKAGWVKYVRDYVREGQKIVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L  D  R  I LS+K V+++
Sbjct: 67  LRVDTSRRHIDLSLKDVNEH 86


>gi|228478329|ref|ZP_04062937.1| general stress protein GSP13 [Streptococcus salivarius SK126]
 gi|322517143|ref|ZP_08070027.1| RNA binding protein [Streptococcus vestibularis ATCC 49124]
 gi|228250008|gb|EEK09278.1| general stress protein GSP13 [Streptococcus salivarius SK126]
 gi|322124293|gb|EFX95804.1| RNA binding protein [Streptococcus vestibularis ATCC 49124]
          Length = 122

 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G +  +  +GAFV       GL+HIS++ T  +    + +K    V V+++DFD+   K
Sbjct: 8   RGVITGIKPYGAFVSLENGTTGLIHISEIKTGYIDNIYNTLKVDQEVLVQVVDFDEFTQK 67

Query: 683 IKLSMKVVDQNTGK 696
             LS++ +++   K
Sbjct: 68  ASLSLRTLEEEKNK 81


>gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424]
 gi|226736901|sp|B7KB81|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424]
          Length = 242

 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 50/218 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-----LKDGQDFFPLTVNYQERTY 68
           RP+  ET   +R   G+VLA  GET VL T     +     L  G+ +  LT  Y+    
Sbjct: 15  RPILFETN-YSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGW--LTAEYR---- 67

Query: 69  AVGKIPGGYLRRESRPTENEIL--------ISRMIDRSIRPLFSKCYKNETQVII--NVM 118
               +PG    R+SR    E++        I R+I RS+R         E  +II  +V+
Sbjct: 68  ---MLPGATPERQSR----ELMQLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVL 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDE 169
           Q D  +    ++    +  L +  L         P + PV    V  I G+  L+    E
Sbjct: 121 QADAGTRTTAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLIEGEPFLDLNYAE 180

Query: 170 D-----------QGSLDLF-VSGTQDAVLMVELEANQL 195
           D            G+LDL  V GT ++     L+ NQL
Sbjct: 181 DTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQL 218


>gi|125987739|sp|Q1XDE2|RR1_PORYE RecName: Full=30S ribosomal protein S1, chloroplastic
          Length = 263

 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R +I   +    V  I +G + ++  +G F+   G   GLVHIS+++ + + + S   K 
Sbjct: 179 RALISQASSNLIVGNIIEGIINQITPYGLFIK-VGNLKGLVHISEINIKNLEQISSQFKI 237

Query: 667 GDTVWVKLLDFDDR-GKIKLSMK 688
           GDT+   ++  D + G++ LSMK
Sbjct: 238 GDTIKAVIIHVDKKQGRLSLSMK 260


>gi|190575702|ref|YP_001973547.1| ribonuclease PH [Stenotrophomonas maltophilia K279a]
 gi|226736944|sp|B2FT17|RNPH_STRMK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190013624|emb|CAQ47259.1| putative ribonuclease PH [Stenotrophomonas maltophilia K279a]
          Length = 241

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +  Q G  +   GS L   G+T+ +   ++    + +    L G    
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  R++   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL+DA
Sbjct: 121 VLQADGGTRTAAITGAYVALVDA 143


>gi|126727656|ref|ZP_01743488.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2150]
 gi|126703072|gb|EBA02173.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2150]
          Length = 552

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
           +++G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 278 VHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDTV 337

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 338 KRRVSLGLKQTQRN 351



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGKLAEGDAV-DGVVKNITEYGAFVDLGGV-DGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++  RV   ++++  G+TV V+++  + +  +I L MK
Sbjct: 221 DMAWRRVNHPNEILNIGETVKVQVIKINKETHRISLGMK 259



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 6/79 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V K  +G+V  + +FG F+      DG+VH+S L+ E   +  DV+   ++GD V   + 
Sbjct: 362 VGKQVEGEVKNITEFGLFIGLDNDIDGMVHLSDLTWE--GRGEDVIGDYRKGDMVQAVVT 419

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D ++ +I LS+K +D +
Sbjct: 420 EVDVEKERISLSVKALDNS 438


>gi|73974732|ref|XP_857418.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 3 [Canis familiaris]
          Length = 226

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
            Y+    +TGE  R     R+    G   R+     +         + I  ++ ++DG +
Sbjct: 56  QYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGT 115

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG--HMDFKVA 494
             A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+  G   +   + 
Sbjct: 116 YAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLSHVEEAAGGPQLALALL 171

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                I  ++MD +   + E+ +   L+ A R    +   + +V+ +
Sbjct: 172 PASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 215


>gi|124267890|ref|YP_001021894.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
 gi|124260665|gb|ABM95659.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
          Length = 241

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 30/237 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R ++ +R ++      +   GS L   GDT+ +   ++    +E+      G+   
Sbjct: 5   RTQARAADALRPLTITRRYTKHAEGSVLIAFGDTKVLCTASV----EEKVPPHKRGSGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  R++  V    A    ++ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD--DFII 475
           + ++DG +  A + G+ +A  DA             PI +PVA +++G+V+     D   
Sbjct: 121 VLQADGGTRTAAITGAYVAAHDAVTWLLAQGKIGASPIREPVAAVSVGIVQGTPLLDLEY 180

Query: 476 LSDISGDED------HLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQA 524
           + D + D D        GH   +V GT  G   +  +MD  +    + I  +   QA
Sbjct: 181 IEDSACDTDMNVVMTGAGHF-IEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQA 236


>gi|158421726|ref|YP_001523018.1| RNA binding S1 protein [Azorhizobium caulinodans ORS 571]
 gi|158328615|dbj|BAF86100.1| RNA binding S1 protein [Azorhizobium caulinodans ORS 571]
          Length = 781

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDR 680
           + +G V  V  FGAFV     +DGLVH+S L+   V    +VVK GD      +     R
Sbjct: 654 LLEGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDIVKVRVVEVDVAR 713

Query: 681 GKIKLSMK 688
            +I LSM+
Sbjct: 714 KRIALSMR 721


>gi|222150831|ref|YP_002559984.1| general stress protein 13 [Macrococcus caseolyticus JCSC5402]
 gi|222119953|dbj|BAH17288.1| general stress protein 13 [Macrococcus caseolyticus JCSC5402]
          Length = 122

 Score = 40.4 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 624 KGQVVKV-----MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           KGQ +KV       +GAFV      +GL+HIS++  + V   + ++  G  V  K+L+  
Sbjct: 7   KGQFIKVKVTGIQPYGAFVETEDHTEGLIHISEVMNDYVHNLNLLLSVGQIVKAKVLNVS 66

Query: 679 DRGKIKLSMKVVD 691
           + GK+ LS+K  D
Sbjct: 67  EDGKLNLSLKEND 79


>gi|254524022|ref|ZP_05136077.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
 gi|219721613|gb|EED40138.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
          Length = 241

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +  Q G  +   GS L   G+T+ +   ++    + +    L G    
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  R++   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL+DA
Sbjct: 121 VLQADGGTRTAAITGAYVALVDA 143


>gi|217967761|ref|YP_002353267.1| RNA binding S1 domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336860|gb|ACK42653.1| RNA binding S1 domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 552

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 12/139 (8%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           + P  EI    P  I+N + +G KV   ++       NID+    K    S+ ++E    
Sbjct: 303 YIPVSEISWGRPSNIKNELKIGDKVRLKVL-------NIDE--INKKIFLSMKQVEPNPW 353

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            +  I    ++  I  G++  + +FG F+      +GL+    LS ER     +  K GD
Sbjct: 354 DV--IDKNYKIGDIVSGKITNITEFGIFIEIKPGLEGLIPKKFLSWERTNDLFEKFKIGD 411

Query: 669 TVWVKLLDFDDRGKIKLSM 687
           T+ VK++D D   K KL++
Sbjct: 412 TLEVKIIDLDKENK-KLTL 429


>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
 gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
          Length = 233

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 26/221 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R++GR    +R + ++  LL +  GS+ F +  T  +  V  G  E       ++  ++ 
Sbjct: 9   RLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAV-YGPIE-------VNSARKE 60

Query: 373 DFMMHY---NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
             +  Y    F P A G  + +     +E+    L + A+  V+  T      + ++ ++
Sbjct: 61  KILKSYVEVTFTP-ALGNTTYL--DKEKEL----LVKNAVESVILTTLHPRTQVSVIIQV 113

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-----FIILSDISGDED 484
              DGS    ++  + LAL+DAG+ ++  +  I +    D +D      I+  D++ + +
Sbjct: 114 YSDDGSIVSCSINAACLALLDAGIEMNGLIGSITLMNEDDDEDNNKCLMIVDPDLNEENN 173

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 F  +   + I    M   IG ++E+     L+ A+
Sbjct: 174 SKAMAIFAFSSNSNNIV---MSKTIGTLTEDQYFECLKAAR 211


>gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
 gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
          Length = 238

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 22/231 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+ +   GS L   G+T  +   +L    +++    L G  R
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASL----EDKPPPWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R  + + +  G      RL  R++  V    A     + I  
Sbjct: 57  GWVTAEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LAL D              P+   VA ++ G+  +G   I L
Sbjct: 117 DVIQADGGTRTASITGAWLALRDCFEWMRSRSIIKDNPLRDHVAAVSCGIF-NGTPVIDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D + D       +F + G+  G+  +Q   ++   S + +   L  A+ G
Sbjct: 176 -DYAEDSTAETDANFVITGS-GGLVEIQATAEVAVFSPDELTSLLTLAQGG 224


>gi|255714000|ref|XP_002553282.1| KLTH0D13156p [Lachancea thermotolerans]
 gi|238934662|emb|CAR22844.1| KLTH0D13156p [Lachancea thermotolerans]
          Length = 1731

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN DDD  + + +   +E+     +++S  D+ +V +I++G V  V DFG FV    
Sbjct: 1230 GKVVNCDDDSHI-LVTLKESEVNGELRILKSYNDI-KVGEIFEGAVKNVTDFGLFVKLDN 1287

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              +  GL H ++++   V   + +   GD V   +L  + D+ ++ L +K
Sbjct: 1288 TVNVTGLAHKTEVADSAVGDLASIFGVGDKVKAIVLKVNPDKKQLSLGLK 1337


>gi|161528743|ref|YP_001582569.1| DNA-directed RNA polymerase subunit E' [Nitrosopumilus maritimus
           SCM1]
 gi|160340044|gb|ABX13131.1| DNA-directed RNA polymerase [Nitrosopumilus maritimus SCM1]
          Length = 198

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           R    ++T  P++ +I +G++V + DFGAFV   G  D L+H+SQ+
Sbjct: 69  RVQFEALTFYPKLQEIVQGEIVDITDFGAFVRI-GPTDALLHLSQV 113


>gi|193216985|ref|YP_002000227.1| transcription accessory protein Tex [Mycoplasma arthritidis
           158L3-1]
 gi|193002308|gb|ACF07523.1| transcription accessory protein Tex [Mycoplasma arthritidis
           158L3-1]
          Length = 717

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKL 674
           E+ K Y GQV+ V DFGAF      +  LVHIS +  +    +   S+++  G+   +++
Sbjct: 641 EIGKRYTGQVINVTDFGAFFFLGIKQSALVHISNMKKDDESFIKHPSEILNVGENWTIEI 700

Query: 675 LDFD-DRGKIKLSM 687
           +  D +R +I+  +
Sbjct: 701 ISIDKERERIQAKL 714


>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
 gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
          Length = 264

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 9/200 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R + A++G+++  +GS++F  G+T+ I  V  G  E       L    R
Sbjct: 9   LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAV-YGPHEVHNRSQQL--WDR 65

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 Y+    +TG+  R G  +RR      + R+ +   +         + I  ++ +
Sbjct: 66  ALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQ 125

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DG +  A +  ++LAL +AG+P+   VA  A G +        L D++  ED  G  D 
Sbjct: 126 ADGGTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTP----LLDLNYVEDSGGGPDV 181

Query: 492 KVA--GTDSGITAMQMDMKI 509
            VA       ++ +QMD K+
Sbjct: 182 TVALFPKVDKVSLLQMDSKM 201


>gi|296114411|ref|ZP_06833065.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
 gi|295979172|gb|EFG85896.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
          Length = 242

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 22/208 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S Q G  +   GS+L   G T+ +   ++ +R        L G  +
Sbjct: 1   MRPSGRAIDALRPVSIQTGFARHAEGSALIRMGGTEVLCAASIESR----VPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       A   ++ G      RL  RA+   +   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRATHSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL  A            +PI+  VA ++ GL   G   ++ 
Sbjct: 117 DVLNADGGTRCAAITGAWVALRLALDGLVRANVIPALPITAQVAAVSCGLT--GAGAVLD 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            D + D + +   +F +  T  GI  +Q
Sbjct: 175 LDYAEDSNAVADANFVLTET-GGIVEIQ 201


>gi|257053992|ref|YP_003131825.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorhabdus
           utahensis DSM 12940]
 gi|256692755|gb|ACV13092.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorhabdus
           utahensis DSM 12940]
          Length = 730

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + Y+G V    +FG FV    +  GL+H S+L + R+   S   + GDTV+V++ +  D
Sbjct: 38  GRYYRGTVDGFAEFGVFVDIGDSVTGLLHESELDS-RLESLS--WQPGDTVYVRVTNVRD 94

Query: 680 RGKIKLSMKV 689
            G + LS  +
Sbjct: 95  NGNVDLSWSI 104


>gi|221640718|ref|YP_002526980.1| ribonuclease PH [Rhodobacter sphaeroides KD131]
 gi|254808599|sp|B9KPU4|RNPH_RHOSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221161499|gb|ACM02479.1| Ribonuclease PH [Rhodobacter sphaeroides KD131]
          Length = 237

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKPV 459
           ++ ++DG +  A++ G  +A       L+ AG+ +S P+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPI 155


>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
 gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
          Length = 269

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R+DGR    +R +SAQ+     + GSS    G+T +I+    G  E ++   +     
Sbjct: 13  KLRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNT-SIMCSVHGPAEGKRGDATGGAAG 71

Query: 371 RNDFMMHYNFLPCATGEVSR---MGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIV 426
               ++  +        V R    G   R+      + R A    L  T  +P+ T+ I 
Sbjct: 72  SAGAIVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHL-HTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A V   +LAL+DAG+P+   ++    G+
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLSACTSGM 170


>gi|126463642|ref|YP_001044756.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17029]
 gi|166228308|sp|A3PNR8|RNPH_RHOS1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126105306|gb|ABN77984.1| RNAse PH [Rhodobacter sphaeroides ATCC 17029]
          Length = 237

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKPV 459
           ++ ++DG +  A++ G  +A       L+ AG+ +S P+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPI 155


>gi|317403008|gb|EFV83546.1| ribonuclease PH [Achromobacter xylosoxidans C54]
          Length = 244

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 30/242 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  + +R  S + G  +   GS L   G+T  +   ++     E+    L G   
Sbjct: 8   ARPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASV----LEKVPPFLKGKGE 63

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G  S R     RL  R++  V    A    TL + 
Sbjct: 64  GWVTAEYGMLPRATHTRGDREAAR-GKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLD 122

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD--DF 473
            ++ ++DG +  A++ G+ +A  DA             PI   VA +++GLV+     D 
Sbjct: 123 CDVLQADGGTRCASITGAWVAASDAVALLMQRGDLAVNPIRDAVAAVSVGLVQGRPVLDL 182

Query: 474 IILSDISGDED-----HLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKRG 527
               D + D D       G    +V GT  G T  + ++  + G++EN  +  L +A+R 
Sbjct: 183 DYEEDSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDAMLGLAEN-GIAGLVRAQRA 241

Query: 528 RL 529
            L
Sbjct: 242 AL 243


>gi|302424003|ref|XP_003009828.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
 gi|261361662|gb|EEY24090.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
          Length = 1789

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 620  NKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            N+I  G++ KV DFGAF+   G+ +  GL H S+++   V     + + GD V  K+L  
Sbjct: 1297 NQIVTGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYQAGDVVKAKVLTL 1356

Query: 678  DDRGKIKLSM 687
             DR K ++S 
Sbjct: 1357 -DRNKKRISF 1365


>gi|313126159|ref|YP_004036429.1| recj-like exonuclease with dnaj-type zn-finger domain
           [Halogeometricum borinquense DSM 11551]
 gi|312292524|gb|ADQ66984.1| RecJ-like exonuclease with DnaJ-type Zn-finger domain
           [Halogeometricum borinquense DSM 11551]
          Length = 704

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + YKG+V    +FG FV       GL+H S+L  +R  ++ D  + GDTV+V++ +  D 
Sbjct: 26  RYYKGEVDGFAEFGVFVDLASGVTGLLHRSEL--DRRLESLD-WEAGDTVFVQVKNIRDN 82

Query: 681 GKIKLSMKV 689
           G I L   +
Sbjct: 83  GNIDLGWSI 91


>gi|42522520|ref|NP_967900.1| hypothetical protein Bd0954 [Bdellovibrio bacteriovorus HD100]
 gi|39575052|emb|CAE78893.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 780

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ I  + D+ E   I  G V  V +FGAFV     +DGLVHIS LS + V     VV  
Sbjct: 637 RDDIMEVKDLTE-GMICPGIVTNVTNFGAFVDIGVHQDGLVHISALSHKFVDDPRKVVNP 695

Query: 667 GD 668
           GD
Sbjct: 696 GD 697


>gi|319405005|emb|CBI78614.1| 30S ribosomal protein S1 [Bartonella sp. AR 15-3]
          Length = 566

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN    G++    +FG F+   G  DG+VH+S L   R   +  D+  +GDTV   +LD 
Sbjct: 369 VNSQITGEIKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDMYNKGDTVRAVVLDV 428

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D ++ +I L +K +  +  K  V
Sbjct: 429 DVEKERISLGIKQLSSDKMKEAV 451


>gi|289192398|ref|YP_003458339.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
 gi|288938848|gb|ADC69603.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
          Length = 187

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +  ++  +PE+ ++ +G+VV V++FG+FV   G  DGL+H+SQ+  + V+
Sbjct: 71  VFETLVYMPEMYELIEGEVVDVVEFGSFVRL-GPLDGLIHVSQIMDDYVS 119


>gi|255018029|ref|ZP_05290155.1| hypothetical protein LmonF_10391 [Listeria monocytogenes FSL
           F2-515]
          Length = 301

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D   V +  TVWV  +D   + 
Sbjct: 229 QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVD-TKKN 287

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 288 RIALTM 293


>gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c]
 gi|123063997|sp|Q15MV7|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c]
          Length = 237

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R ++          GS L   G+T+ +   ++     E     + G  +
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASV----TEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y+ LP AT      E +R G    R +   RL  R++   L        T+ + 
Sbjct: 57  GWVNAEYSMLPRATHTRSDREAAR-GKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVD 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA       G+    P+   +A I++G+ K       
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALTWMRSKGIIKTNPMKHMIAAISVGIYKGN----A 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           ++D+   ED     D  V  TD+G
Sbjct: 172 IADLEYTEDSEAETDMNVVMTDTG 195


>gi|313894651|ref|ZP_07828214.1| S1 RNA binding domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440841|gb|EFR59270.1| S1 RNA binding domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 133

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   V   + ++K  D V VK+L  
Sbjct: 4   EVGNIVDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYVEDINTLLKVEDAVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
           D   KI LS++
Sbjct: 64  DG-NKIGLSIR 73


>gi|114797862|ref|YP_758926.1| 30S ribosomal protein S1 [Hyphomonas neptunium ATCC 15444]
 gi|114738036|gb|ABI76161.1| ribosomal protein S1 [Hyphomonas neptunium ATCC 15444]
          Length = 659

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + +FG FV      DG+VHI+ ++ ++    + +   +GD V  K+LD D D+ 
Sbjct: 373 EGEVRGITEFGLFVGLGPDLDGMVHINDIAWDKSGDQAIEAFTKGDRVKAKVLDVDVDKE 432

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q +G PI
Sbjct: 433 RISLGIK---QLSGDPI 446



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+   KG V  + D+GAFV      +GL+H+S++S T++      ++     V V++LD 
Sbjct: 281 VSARLKGTVTNITDYGAFVELEDGVEGLIHVSEMSWTKKNVHPGKILSTSQEVDVEVLDV 340

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 341 DSEKRRISLGLK 352


>gi|298709770|emb|CBJ31572.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 453

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE----GDTVWVKLLDFDDR 680
           G +V+V++FG FV      +GLVHIS +S E+  +  D + E    GD ++V++   D+ 
Sbjct: 314 GGIVRVLEFGFFVDVGAKANGLVHISSIS-EKENRYLDNLNEFASVGDKMYVRVNGVDEE 372

Query: 681 GKIKLS 686
           G++ L+
Sbjct: 373 GRLSLA 378


>gi|237736431|ref|ZP_04566912.1| transcription accessory protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229421473|gb|EEO36520.1| transcription accessory protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 721

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAF+      D L+HIS++S + +   S V+  G  + V++ D D +R +
Sbjct: 654 EGTVRNVVKFGAFIDIGLKNDALLHISEISNKFIDDPSKVLSVGQIIKVRIKDIDKERER 713

Query: 683 IKLSMK 688
           + L+ K
Sbjct: 714 VGLTKK 719


>gi|115438028|ref|NP_001043440.1| Os01g0589000 [Oryza sativa Japonica Group]
 gi|53792249|dbj|BAD52882.1| 30S ribosomal protein S1-like [Oryza sativa Japonica Group]
 gi|113532971|dbj|BAF05354.1| Os01g0589000 [Oryza sativa Japonica Group]
 gi|215704693|dbj|BAG94321.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 438

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V K+  +GA V   G  R GL+HIS +S  RV   SD++K  + V V ++  +  
Sbjct: 289 LLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVP 348

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS+  ++   G
Sbjct: 349 DKIALSISDLESTPG 363


>gi|152998356|ref|YP_001343191.1| ribonuclease PH [Marinomonas sp. MWYL1]
 gi|189043766|sp|A6W3H7|RNPH_MARMS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839280|gb|ABR73256.1| ribonuclease PH [Marinomonas sp. MWYL1]
          Length = 239

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ I   T+ +         L G  +
Sbjct: 1   MRPSGREADQLRPLKITRNFTKHAEGSVLIECGDTKVICTATVVS----GVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G    R +   RL  R++   +        T+ I
Sbjct: 57  GWITAEYGMLPRSTH--SRMDREAARGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G  +AL DA             PI   +A I++G+ K     +
Sbjct: 115 DCDVIQADGGTRTASITGGFVALADAMRVLVENKKVKENPIVSQIAAISVGVYKG----V 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  V   D  G   +Q   +    S+  M+  L  A++G   I+ 
Sbjct: 171 PVLDLDYPEDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIME 230

Query: 534 EMSKVL 539
                L
Sbjct: 231 AQRAAL 236


>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
 gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
          Length = 276

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 37/196 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RPL + T   A+++DG+ L   G+T VLA V  +      ++ F  T N       V  +
Sbjct: 38  RPLSI-TLSYAKKADGSALVKLGDTTVLAGVKVE-----PEEPFEDTPNQGNLVVNVELL 91

Query: 74  PGGYLRRES-RPTENEILISRMIDRSIR--------PLFSKCYKNETQVIINVMQHDLES 124
           P  Y   E   P EN I +SR++DRS+R         L  +  K    V +++   D   
Sbjct: 92  PLAYETFEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTVWVDIYVLDYGG 151

Query: 125 SPHVVSMVAASAALMLS---------------------GLPFEGPVVGAQVDYINGQYVL 163
           +      +AA +AL  +                      LP   PVV   V  I    V+
Sbjct: 152 NILDACTLAAVSALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPVVTVSVAKIGKHLVV 211

Query: 164 NPRLDEDQGSLDLFVS 179
           +P LDE +G +D  +S
Sbjct: 212 DPDLDE-EGIMDAKIS 226



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           LD+ +R DGR     R +S  +   ++  GS+L   GDT   V+  +    +E + D+  
Sbjct: 23  LDRGIRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTT--VLAGVKVEPEEPFEDT-- 78

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
              + + +++   LP A  E    G P    I   R+  R++ 
Sbjct: 79  -PNQGNLVVNVELLPLAY-ETFEPGPPDENAIELSRVVDRSLR 119


>gi|162448195|ref|YP_001621327.1| RNA-binding S1 domain-containing protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986302|gb|ABX81951.1| RNA-binding S1 domain protein [Acholeplasma laidlawii PG-8A]
          Length = 112

 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           +V  +  +G FV +   + GL+HIS++S   V   + +   GD ++  +LDFDD+  K++
Sbjct: 10  KVTGIQPYGVFVEYENYQ-GLIHISEISDRFVQDITKLFNIGDEIYAVILDFDDKNQKLQ 68

Query: 685 LSMK 688
           LS K
Sbjct: 69  LSYK 72


>gi|326527133|dbj|BAK04508.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 450

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +GQV +V  +G FV    +   GL HIS+LS E V   +   + GD V  K+L  D DR 
Sbjct: 1   EGQVKRVESYGLFVTIKSSELVGLCHISELSDEPVLDINACYRAGDMVKAKILKIDQDRH 60

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 61  RVSLGLK 67


>gi|320655608|gb|EFX23536.1| ribonuclease PH [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 236

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 25/203 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKG--Q 54

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  RA+   +   A   +T+ +  
Sbjct: 55  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 114

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL DA             P+   VA +++G+V +G+    +
Sbjct: 115 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AV 170

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T+ G
Sbjct: 171 CDLEYVEDSAAETDMNVVMTEDG 193


>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
 gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
          Length = 270

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L +K R+DGR  E +R +  +V ++++  GS+    G+TQ +V + L     E + D  
Sbjct: 15  LLKEKKRIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDL--GEPFPDL- 71

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV----LPQTAQFPYT 422
               +     +   +P A+      G P  R I   R+  R I       L +    P  
Sbjct: 72  --PDKGVMTTNVELVPLASPTFEP-GPPDERAIELARVVDRGIRESQAIDLEKLVIIPGK 128

Query: 423 L-RIV---SEITESDGSSSMATVCGSSLALMDAGVP 454
           L R+V     + + DG+   AT  G+  AL+   +P
Sbjct: 129 LVRVVFIDVHVLDHDGNLVDATGIGAIAALLSTKMP 164


>gi|77862413|gb|ABB04481.1| 30S ribosomal protein S1 [Yersinia kristensenii]
          Length = 241

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD +
Sbjct: 196 KGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEI 241


>gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9]
 gi|254808590|sp|C1DCK5|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9]
          Length = 238

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 27/168 (16%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIP---GGYL 78
           R ++G+VL  +G+T V+ T   + S+     G+    +T  Y       G +P      +
Sbjct: 22  RHAEGSVLVEFGDTKVICTATVEESVPGFLKGKGQGWVTAEY-------GMLPRSTHSRM 74

Query: 79  RRES---RPTENEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLES-----SPHV 128
           RRE+   + +     I R+I RS+R +       E Q+++  +V+Q D  +     S   
Sbjct: 75  RREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQADGGTRTASISGAW 134

Query: 129 VSMVAASAALMLSGLPFEGP----VVGAQVDYINGQYVLNPRLDEDQG 172
           V++  A   LM  GL  E P    V    V  ++GQ VL+    ED G
Sbjct: 135 VALADAIDGLMAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYTEDSG 182


>gi|255583850|ref|XP_002532676.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223527589|gb|EEF29704.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1031

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 13/80 (16%)

Query: 622 IYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL- 675
           +Y+G+V +VM  G FV        G ++GL+H S      V K    V+ GD V+VK++ 
Sbjct: 90  VYRGRVSRVMAKGCFVQLDGDDDFGGKEGLLHQSDF---LVGKE---VRRGDEVYVKVVS 143

Query: 676 DFDDRGKIKLSMK-VVDQNT 694
           D   +  ++LSMK VVD+NT
Sbjct: 144 DSPGQKGLRLSMKDVVDRNT 163


>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Tribolium castaneum]
          Length = 282

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 102/231 (44%), Gaps = 19/231 (8%)

Query: 282 EHSSWNEGEI---VSVFEDIQAKVVRT----VMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           +H   N  EI     +F+ +  K ++T    ++     R DGR S   R I  + G++ +
Sbjct: 4   DHKRINGPEISIPYQLFDKLNTKSLKTQFSEIVQPNGTRADGRTSTEHRKIFLKTGVVSQ 63

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
             GS+ +I  D   ++V     RE     D  S   + +    + F P +  +  R+   
Sbjct: 64  AKGSA-YIELDQTKVIVSVFDPREIPNKTDYSS---KGEIYCEFKFAPFSCHK-RRLHQQ 118

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
              E     + ++A+   + +  +FP + + I + +  +DG++  A +  + +AL  AG+
Sbjct: 119 DAEEQQFSAIMKQALESAVFR-HEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGI 177

Query: 454 PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD-FKVAGTDSGITAM 503
           P+   +  + + +   G+  ++  D + +E+ L  +  FK    + GI  +
Sbjct: 178 PMYDLITSVTLAV--QGNHLLV--DPTLEEERLCQVPLFKEEENNHGIVVL 224


>gi|58584320|ref|YP_197893.1| 30S ribosomal protein S1 [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58418636|gb|AAW70651.1| Ribosomal protein S1 [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 550

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLD 676
           +V+ I+KG +  + D+G FV      +GLVH S+++  +     + +V  G  V VK+L+
Sbjct: 308 QVDSIHKGHITSIEDYGLFVELKPGIEGLVHSSEITWVKSNLPVNSLVTRGQEVSVKILN 367

Query: 677 FD-DRGKIKLSMK 688
            D  + ++ LSMK
Sbjct: 368 VDITKNRMSLSMK 380


>gi|332308581|ref|YP_004436432.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175910|gb|AEE25164.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 237

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R ++          GS L   G+T+ +   ++     E     + G  +
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASV----TEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S   A   ++ G      RL  R++   L        T+ +  
Sbjct: 57  GWVTAEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA       G+    P+   +A I++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTWMRSKGIIKTNPMKHMIAAISVGIYKGN----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED     D  V  TD+G
Sbjct: 173 ADLEYTEDSDAETDMNVVMTDTG 195


>gi|118593758|ref|ZP_01551127.1| 30S ribosomal protein S1 [Stappia aggregata IAM 12614]
 gi|118433668|gb|EAV40331.1| 30S ribosomal protein S1 [Stappia aggregata IAM 12614]
          Length = 558

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+++S+    E     +G V  + D+GAFV   G  DGL+H++ ++  R+   S+V
Sbjct: 179 EQRSELVQSL----EEGHTVEGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRINHPSEV 233

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV V+++  + +  +I L MK
Sbjct: 234 LTIGQTVKVQIIRVNQETHRISLGMK 259



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V +L+ D  +
Sbjct: 279 FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVMILEVDPVK 338

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 339 RRISLGLKQTLQN 351



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V    +FG F+   G  DG+VH+S L   R   +  +  K+GD V   +LD D D+ 
Sbjct: 367 EGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVKAVVLDVDVDKE 426

Query: 682 KIKLSMKVVDQNTGKPI 698
           +I L +K   Q +G P+
Sbjct: 427 RISLGIK---QLSGDPM 440


>gi|300023832|ref|YP_003756443.1| ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525653|gb|ADJ24122.1| ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888]
          Length = 572

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG V  + D+GAFV      +GL+H+S++S T++      +V     V V++L+ D  + 
Sbjct: 292 KGTVTNIADYGAFVELEPGVEGLIHVSEMSWTKKNTHPGKIVSTSQQVEVQVLEVDPQKR 351

Query: 682 KIKLSMKVVDQN 693
           +I L +K   +N
Sbjct: 352 RISLGLKQTQEN 363


>gi|332559695|ref|ZP_08414017.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
 gi|332277407|gb|EGJ22722.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
          Length = 237

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKPV 459
           ++ ++DG +  A++ G  +A       L+ AG+ +S P+
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPI 155


>gi|328956695|ref|YP_004374081.1| putative RNA helicase [Carnobacterium sp. 17-4]
 gi|328673019|gb|AEB29065.1| putative RNA helicase [Carnobacterium sp. 17-4]
          Length = 725

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DG+VHIS+LS   +   ++   V +  TVWV  +D   +G
Sbjct: 656 EGTVRNVVDFGAFVDVGVKQDGMVHISKLSKGYIQHPTNVVSVGDVVTVWVDSVDL-KKG 714

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 715 RIALTM 720


>gi|215400730|ref|YP_002327491.1| ribosomal protein S1 [Vaucheria litorea]
 gi|194441180|gb|ACF70908.1| ribosomal protein S1 [Vaucheria litorea]
          Length = 261

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 622 IYKGQVVK-----VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            YKG V K     +  FG F++  G R  L+HIS++  +++   +   K+GD + VK+L 
Sbjct: 190 FYKGLVQKCCIIAIKPFGIFLNIYGLR-CLLHISEIPNKKIKFINKYYKKGDHIIVKVLY 248

Query: 677 FDDR-GKIKLSMK 688
            ++  GKI +SMK
Sbjct: 249 INNNTGKIAVSMK 261


>gi|303313265|ref|XP_003066644.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
 gi|240106306|gb|EER24499.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1888

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V KV +FGAFV   G  +  GL H S+++  ++     + ++GD V  K+L  D
Sbjct: 1392 QIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKID 1451

Query: 679  -DRGKIKLSMKV 689
              + +I L +K 
Sbjct: 1452 LKKDQISLGLKA 1463


>gi|110681047|ref|YP_684054.1| 30S ribosomal protein S1 [Roseobacter denitrificans OCh 114]
 gi|109457163|gb|ABG33368.1| ribosomal protein S1 [Roseobacter denitrificans OCh 114]
          Length = 559

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 167 GNIVVSRRAILEESRAEQRAEVIGNLSE-GQTVDGVVKNITEYGAFVDLGGV-DGLLHVT 224

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++
Sbjct: 225 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQED 268



 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  +
Sbjct: 283 HTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGAK 342

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K   +N
Sbjct: 343 RRVSLGLKQTMRN 355


>gi|323342951|ref|ZP_08083182.1| YhgF like protein [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463015|gb|EFY08210.1| YhgF like protein [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 726

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           G V  V+DFGAFV     +DGLVHIS+LS + V   +D
Sbjct: 655 GTVRNVVDFGAFVDIGVKQDGLVHISKLSDQFVKHPTD 692


>gi|73667834|ref|YP_303849.1| DNA-directed RNA polymerase subunit E' [Methanosarcina barkeri str.
           Fusaro]
 gi|72394996|gb|AAZ69269.1| DNA-directed RNA polymerase, subunit E' [Methanosarcina barkeri
           str. Fusaro]
          Length = 194

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +I  VPE+ +I +G+VV+ + FG FV   G  DGL+H+SQ++
Sbjct: 74  AIMFVPELQEIIEGEVVETVGFGVFVGM-GPMDGLLHVSQIT 114


>gi|77464799|ref|YP_354303.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
 gi|77389217|gb|ABA80402.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
          Length = 241

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 5   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 60

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R  A + ++ G      RL  RA+   + ++A     + I  
Sbjct: 61  GWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 120

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKPV 459
           ++ ++DG +  A++ G  +A       L+ AG+ +S P+
Sbjct: 121 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPI 159


>gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD]
 gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD]
          Length = 253

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 19/204 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R+DGR+ + +R +           GS L   G+T+ +   T          DS  G 
Sbjct: 12  KPIRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGW 71

Query: 370 QRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I
Sbjct: 72  ----VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQI 127

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGD- 482
             ++ ++DG +  A+V G+ +AL+DA +  ++    I  A  ++KD    + +  I+G  
Sbjct: 128 DCDVLQADGGTRTASVTGAYVALVDA-LNWAEKNGHIRSAASVIKDSISAVSVGVINGTP 186

Query: 483 -------EDHLGHMDFKVAGTDSG 499
                  ED     D  VA T SG
Sbjct: 187 MLDLPYVEDSQAMTDMNVAMTGSG 210


>gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810]
 gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810]
          Length = 252

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R++    G L    GS+L   G T+ +   +           S SG    
Sbjct: 12  RIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVPRWKQGSGSGW--- 68

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  V+   A    T+++  +
Sbjct: 69  -VTAEYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCD 127

Query: 429 ITESDGSSSMATVCGSSLALMDA--------GVP-----ISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA         +P     ++  V+ I++G+V   DD  +
Sbjct: 128 VLQADGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIV---DDRPL 184

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           L D+   ED     D  V  T SG
Sbjct: 185 L-DLEYREDVAAGTDMNVVVTGSG 207


>gi|317121029|ref|YP_004101032.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591009|gb|ADU50305.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
          Length = 418

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  ++ +GAF+     R GL+HIS++S   V +  D   +G+ V V+++ FD + GK 
Sbjct: 153 GTITGIVGYGAFLVTDDGRRGLIHISEISDWYVERAEDYFYKGERVQVEVVHFDPNSGKY 212

Query: 684 KLSMK 688
             S +
Sbjct: 213 AFSTR 217


>gi|114770170|ref|ZP_01447708.1| 30S ribosomal protein S1 [alpha proteobacterium HTCC2255]
 gi|114549007|gb|EAU51890.1| 30S ribosomal protein S1 [alpha proteobacterium HTCC2255]
          Length = 559

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ + D
Sbjct: 284 LHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIETD 343

Query: 680 RGKIKLSMKVVDQNTGKP 697
           + ++ L +K   Q  G P
Sbjct: 344 KRRVSLGLK---QTQGNP 358



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVK 673
           + PE  ++ +G+V  + +FG F+   G  DG+VH+S L+ ++  + +    K+GD V   
Sbjct: 365 NFPEGAEV-EGEVKNITEFGLFIGLEGEIDGMVHLSDLAWDQSGEEALANYKKGDIVKAV 423

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           ++D D ++ +I LS+K + Q+
Sbjct: 424 VIDVDAEKERISLSVKNLGQD 444


>gi|88607931|ref|YP_504887.1| 30S ribosomal protein S1 [Anaplasma phagocytophilum HZ]
 gi|88598994|gb|ABD44464.1| ribosomal protein S1 [Anaplasma phagocytophilum HZ]
          Length = 542

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDF 677
           V  I+KG V  + D+G FV      +GL+H+S++S  R     + +   G+ + VK+L  
Sbjct: 297 VGSIHKGTVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQLFMRGEEIEVKVLSI 356

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ LS+K   +N
Sbjct: 357 DATKNRMSLSIKRCKEN 373



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDG 645
           G V ++  ++ E E+  +   S     E   I +G+V  +  +G F+        G  DG
Sbjct: 179 GNVVVSRKAVLE-ESLADAKDSFLSTLEEGSIVEGKVKSITKYGVFIEIHESPTVGVVDG 237

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           L+HI+ +S  RV+  S V   G TV  K++  D +  KI L +K ++++
Sbjct: 238 LLHITDISWSRVSHPSAVFSCGQTVRAKIIRIDRENRKISLGVKQLEES 286


>gi|115488938|ref|NP_001066956.1| Os12g0541500 [Oryza sativa Japonica Group]
 gi|77556660|gb|ABA99456.1| Elongation factor TS family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113649463|dbj|BAF29975.1| Os12g0541500 [Oryza sativa Japonica Group]
 gi|125536917|gb|EAY83405.1| hypothetical protein OsI_38621 [Oryza sativa Indica Group]
 gi|125579622|gb|EAZ20768.1| hypothetical protein OsJ_36392 [Oryza sativa Japonica Group]
          Length = 1123

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 596 ASSSLAEIEAAREMIRSITDVPEVN-------KIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           A +S + I  A   IR  +++P +N         + G+V  +  FG FV      +GLVH
Sbjct: 113 AEASTSSIPKAGRNIRK-SEMPPLNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVH 171

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           IS++S   V   S +   G  V V+L++ + + G+I L+M+ 
Sbjct: 172 ISRVSDGFVKDISSLFTVGQEVSVRLVEANKETGRISLTMRT 213


>gi|326387915|ref|ZP_08209521.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207961|gb|EGD58772.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
          Length = 238

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I+ +    +   GS L   GDT+ IV  ++    +E+    L G   
Sbjct: 1   MRASGRAADEMRAITIETHFTKHAEGSVLIGFGDTKVIVTASV----EERVPPFLRGKGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       A   ++ G      RL  R++  V          + +  
Sbjct: 57  GWVTAEYSMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGD---DF 473
           ++ ++DG +  A++ G+ +A       LM +G     P+ + VA I+ G+V DG    D 
Sbjct: 117 DVIQADGGTRTASISGAWIALRLAVDKLMASGQIKEDPLPRKVAAISCGIV-DGTPVLDL 175

Query: 474 IILSDISGDED 484
               D + D D
Sbjct: 176 DYTEDSTADAD 186


>gi|241894932|ref|ZP_04782228.1| RNA binding protein [Weissella paramesenteroides ATCC 33313]
 gi|241871650|gb|EER75401.1| RNA binding protein [Weissella paramesenteroides ATCC 33313]
          Length = 132

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V ++ +G V  +  +GAFV       GL+HIS+  +  + +  D +K G  V V +LD 
Sbjct: 4   HVGQVLEGVVTGIQPYGAFVQLDEKHQGLIHISECRSAFIHEIEDEIKVGQPVRVMILDI 63

Query: 678 D-DRGKIKLSMKVV 690
           D    KI LS + V
Sbjct: 64  DLYSHKISLSRRTV 77


>gi|163734569|ref|ZP_02142008.1| 30S ribosomal protein S1 [Roseobacter litoralis Och 149]
 gi|161392062|gb|EDQ16392.1| 30S ribosomal protein S1 [Roseobacter litoralis Och 149]
          Length = 559

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +   G V  + ++GAFV   G  DGL+H++
Sbjct: 167 GNIVVSRRAILEESRAEQRAEVIGNLTE-GQTVDGVVKNITEYGAFVDLGGV-DGLLHVT 224

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++
Sbjct: 225 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQED 268



 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  +
Sbjct: 283 HTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGAK 342

Query: 681 GKIKLSMKVVDQN 693
            ++ L +K   +N
Sbjct: 343 RRVSLGLKQTMRN 355


>gi|149198742|ref|ZP_01875785.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
 gi|149138178|gb|EDM26588.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
          Length = 463

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           IDD G V ++     +I A ++  +   ++ E ++I +G + ++  FG FV   G  DGL
Sbjct: 166 IDDRGAV-VSRRDYLKILAEKQREKLQEELVEGDEI-EGVIRRIERFGFFVDLGGV-DGL 222

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           V  S++S +R    ++ V  GD V  K+L  D ++G+I LS++   Q+
Sbjct: 223 VPASEVSWKRNVDLNEFVSVGDQVSCKILALDWEKGRITLSLRACLQD 270


>gi|302524821|ref|ZP_07277163.1| transcriptional accessory protein [Streptomyces sp. AA4]
 gi|302433716|gb|EFL05532.1| transcriptional accessory protein [Streptomyces sp. AA4]
          Length = 824

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGK 682
           +G V  V  FGAF+     +DGL H+S LS   V    DVVK GD      L     R +
Sbjct: 697 EGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPRDVVKPGDIVKVKVLDVDVPRKR 756

Query: 683 IKLSMKVVDQ 692
           I L++++ D+
Sbjct: 757 ISLTLRLDDE 766


>gi|303291157|ref|XP_003064865.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453891|gb|EEH51199.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 2229

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDV-VKEGDTVW 671
            D P+   +  G V +V  +G FV    CG R GL HIS  +  R+    D  V+ G+ V 
Sbjct: 1624 DAPDEGAVLMGTVRRVQTYGVFVTLDDCGGRSGLCHISAFADARIDDGLDAHVRAGERVR 1683

Query: 672  VK 673
            VK
Sbjct: 1684 VK 1685


>gi|254502583|ref|ZP_05114734.1| ribosomal protein S1 [Labrenzia alexandrii DFL-11]
 gi|222438654|gb|EEE45333.1| ribosomal protein S1 [Labrenzia alexandrii DFL-11]
          Length = 558

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E   E+++S+    E     +G V  + D+GAFV   G  DGL+H++ ++  R+   S+V
Sbjct: 179 EQRSELVQSL----EEGHTVEGVVKNITDYGAFVDLGGI-DGLLHVTDIAWRRINHPSEV 233

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  G TV V+++  + +  +I L MK
Sbjct: 234 LTIGQTVKVQIIRVNQETHRISLGMK 259



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S T++      +V     V V +L+ D  +
Sbjct: 279 FSGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVMILEVDPVK 338

Query: 681 GKIKLSMKVVDQN 693
            +I L +K   QN
Sbjct: 339 RRISLGLKQTLQN 351



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           +N   +G+V    +FG F+   G  DG+VH+S L   R   +  +  K+GD V   +LD 
Sbjct: 362 INTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYKKGDMVKAIVLDV 421

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ +I L +K   Q +G P+
Sbjct: 422 DVEKERISLGIK---QLSGDPM 440


>gi|32476474|ref|NP_869468.1| RNA-binding protein [Rhodopirellula baltica SH 1]
 gi|32447019|emb|CAD78925.1| conserved hypothetical protein-putative RNA-binding protein
            [Rhodopirellula baltica SH 1]
          Length = 1257

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 613  ITDVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +T +P ++++ +G      VV VM FG F+       GL+H+S++S   V    + V+ G
Sbjct: 970  MTAMPSLSELKQGDQVIGVVVGVMPFGVFIELSPDCSGLIHVSRISDSYVEDLHEAVQVG 1029

Query: 668  D--TVWVKLLDFDDRGKIKLS 686
            D  T WV   D   R ++ LS
Sbjct: 1030 DVITAWVTGTDAKRR-RVALS 1049


>gi|332141636|ref|YP_004427374.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143438|ref|YP_004429176.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|226736881|sp|B4S201|RNPH_ALTMD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|327551658|gb|AEA98376.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553460|gb|AEB00179.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
          Length = 237

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ +   T+    +E     + G  +
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATV----EEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT    G  +  G    R +   RL  R++   L        T+ +  
Sbjct: 57  GWVTAEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA       G+    P+   +A +++G+ +       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTYMRSKGIIKTNPLKHMIAALSVGIYEG----TPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED     D  +  T++G
Sbjct: 173 ADLEYTEDSEAETDMNIVMTETG 195


>gi|77407499|ref|ZP_00784339.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
 gi|77173893|gb|EAO76922.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
          Length = 102

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           FV     R GL+HIS++ T  +    DV+  GD V+V+++D D+   K  LS++ +++
Sbjct: 4   FVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQKASLSLRTLEE 61


>gi|254295455|ref|YP_003061478.1| ribonuclease PH [Hirschia baltica ATCC 49814]
 gi|254043986|gb|ACT60781.1| ribonuclease PH [Hirschia baltica ATCC 49814]
          Length = 243

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 19/172 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R  E++R++S +VG  +   GS L   G T  +   +  T +  ++   + GT + 
Sbjct: 6   RPSKRAPESLREVSLEVGKSRYAEGSCLVKFGHTHVLCTASW-TGDVPRW---MKGTGKG 61

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    R  A + ++ G      RL  RA+  V    A     + I  +
Sbjct: 62  WVTAEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITIDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKD 469
           + ++DG +  A + G  +AL  A       G+    P+    A I+ G+ +D
Sbjct: 122 VIQADGGTRTAAITGGYVALALAINYLKEEGIISTNPLVSQAAAISCGVYQD 173


>gi|296804114|ref|XP_002842909.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
 gi|238845511|gb|EEQ35173.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
          Length = 1819

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +V +I  G+V KV ++GAF+   G+ +  GL H S+++ +RV   + + ++ D V  K+L
Sbjct: 1327 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKIL 1386

Query: 676  DFD-DRGKIKLSMK 688
              D ++ +I L +K
Sbjct: 1387 KVDLEKCQIALGLK 1400


>gi|194367042|ref|YP_002029652.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
 gi|226736943|sp|B4SU06|RNPH_STRM5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194349846|gb|ACF52969.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
          Length = 241

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +  Q G  +   GS L   G+T+ +   ++    + +    L G    
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   A   ++ G      RL  R++   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL+DA
Sbjct: 121 VLQADGGTRTAAITGAYVALVDA 143


>gi|149914309|ref|ZP_01902840.1| S1 RNA binding domain protein [Roseobacter sp. AzwK-3b]
 gi|149811828|gb|EDM71661.1| S1 RNA binding domain protein [Roseobacter sp. AzwK-3b]
          Length = 773

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 654 EGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 697


>gi|296877020|ref|ZP_06901062.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296431964|gb|EFH17769.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 121

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
           +G +  +  +GAFV        L+HIS++ +  V+   D++  G+ V+V+++D D+   K
Sbjct: 8   EGTITGIQPYGAFVELESGVTSLIHISEIRSGYVSNIHDILSIGEKVFVQVIDVDEYSKK 67

Query: 683 IKLSMKVVDQNTGKPI 698
             LS++ +++   + +
Sbjct: 68  ASLSLRTLEETPQRTV 83


>gi|210621777|ref|ZP_03292806.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
 gi|210154541|gb|EEA85547.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
          Length = 449

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+  R ++ +R +       +   GS L   G+T+ I   T+    +++    L  T   
Sbjct: 3   RLGNRANDEIRPVKITTNFTKYAAGSVLIEMGETKVICTATV----EDKVPPFLRNTGTG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T +     S  G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPSSTQQRKIRDSVRGKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +A   A            +PI   V+ I+ G++   D+ I+  
Sbjct: 119 VIQADGGTRTASITGGFVAAAQAIYGLYQNKEIKKLPIKNFVSAISAGVLN--DEHIL-- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  +ED    +D     TD G
Sbjct: 175 DLCYEEDSAAKVDMNFVMTDKG 196


>gi|85713208|ref|ZP_01044237.1| 30S ribosomal protein S1 [Idiomarina baltica OS145]
 gi|85692981|gb|EAQ30950.1| 30S ribosomal protein S1 [Idiomarina baltica OS145]
          Length = 311

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLL 675
           PE  ++  G+V  + D+G FV      +GLVH+S++  T +    S VV   DTV V +L
Sbjct: 28  PEGTRLT-GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVNLDDTVEVMVL 86

Query: 676 DFD-DRGKIKLSMKVVDQN 693
           + D +R +I L +K    N
Sbjct: 87  EIDEERRRISLGLKQCKPN 105


>gi|126172622|ref|YP_001048771.1| ribonuclease PH [Shewanella baltica OS155]
 gi|152998920|ref|YP_001364601.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160873506|ref|YP_001552822.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217971601|ref|YP_002356352.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304411675|ref|ZP_07393287.1| ribonuclease PH [Shewanella baltica OS183]
 gi|307306273|ref|ZP_07586018.1| ribonuclease PH [Shewanella baltica BA175]
 gi|166228316|sp|A3CZI9|RNPH_SHEB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228317|sp|A6WI99|RNPH_SHEB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043774|sp|A9KXZ7|RNPH_SHEB9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808600|sp|B8E4I8|RNPH_SHEB2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|125995827|gb|ABN59902.1| RNAse PH [Shewanella baltica OS155]
 gi|151363538|gb|ABS06538.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160859028|gb|ABX47562.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217496736|gb|ACK44929.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304349863|gb|EFM14269.1| ribonuclease PH [Shewanella baltica OS183]
 gi|306911146|gb|EFN41573.1| ribonuclease PH [Shewanella baltica BA175]
 gi|315265735|gb|ADT92588.1| ribonuclease PH [Shewanella baltica OS678]
          Length = 237

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASF----TEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G  S R     RL  RA+   +   A    T+ I
Sbjct: 57  GWVTAEYGMLPRSTH--SRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------GVPISKP----VAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+DA       G+  S P    +A +++G+ K G+   
Sbjct: 115 DCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYK-GE--- 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            +SD+   ED     D  V  T++G
Sbjct: 171 AISDLEYIEDSAAETDMNVVMTETG 195


>gi|325286632|ref|YP_004262422.1| Tex-like protein [Cellulophaga lytica DSM 7489]
 gi|324322086|gb|ADY29551.1| Tex-like protein [Cellulophaga lytica DSM 7489]
          Length = 707

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A++ +  + IRSITD+    ++  G V  + +FG FV       GL+HIS L+   V   
Sbjct: 617 AKVFSFNQNIRSITDLV-AGQLLPGIVNNITNFGCFVDVGIKESGLIHISNLADTFVKDV 675

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           ++ V     + VK+L+ D  R +I+L++
Sbjct: 676 NEHVSLHQQIVVKVLEVDVARKRIQLAL 703


>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
 gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
          Length = 283

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-------TLGTREDEQYV 363
           K+R+DGR    +R + AQ+     + GSS    G+T  +  V         G+   E  V
Sbjct: 13  KLRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVV 72

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-T 422
           D           +  N    A  +  R    S R+      A ++       T+ +P+ T
Sbjct: 73  D-----------VDVNIAGFAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHST 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           + +   +  SDGS   A +   +LAL+DAG+P+   + G   G+
Sbjct: 122 ITVQVSVLSSDGSLFAAAINACTLALVDAGIPMPGLLCGCTAGV 165


>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
 gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
          Length = 235

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 29/175 (16%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           +SDG+V+ + G TVV+A V+            P+ V  Q  +     I G YL    RP 
Sbjct: 26  RSDGSVMYSQGATVVIAAVLG-----------PIEVKTQNLS-----IEGSYLECNYRPK 69

Query: 86  ENEILIS-RMIDRSIR-----PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
                +  R+ + +IR      L S+ Y   +++ + V + +   S    ++ +A  AL+
Sbjct: 70  AGLPQVKERIREAAIRDVLELALLSEAYP-RSKMSLQVQELEDRGSTDACALNSACLALL 128

Query: 140 LSGLPFEGPVVGAQVDYIN--GQYVLNPRLDE---DQGSLDLFVSGTQDAVLMVE 189
           + GLP +          IN  G++VL+P L+E    Q S           +L+V+
Sbjct: 129 IGGLPLKYSFAAVHC-IINEQGEFVLDPELNETLRQQASFTFAFDSVDGNLLLVQ 182


>gi|260655209|ref|ZP_05860697.1| protein YhgF [Jonquetella anthropi E3_33 E1]
 gi|260630131|gb|EEX48325.1| protein YhgF [Jonquetella anthropi E3_33 E1]
          Length = 722

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV      DGLVH+SQ+    V   S ++  G  V V +LD D  R +I
Sbjct: 643 GLVSNVTAFGAFVDVGVHTDGLVHVSQMGRP-VKDPSQLLHPGQAVSVTVLDVDLKRNRI 701

Query: 684 KLSMKVVDQNTGK 696
            L++    ++  K
Sbjct: 702 SLALAKTKKDCPK 714


>gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
 gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
          Length = 252

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 29/206 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R+++  +  +    G+ L   G+T+ +   +L         D+  G   
Sbjct: 1   MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASLSEGVPRWRKDTGLGW-- 58

Query: 372 NDFMMHYNFLPCATGEVS-------RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 Y+ LP AT   S       ++G  + +EI   RL  R++   +  TA    T+ 
Sbjct: 59  --VTAEYSMLPRATATRSTRESVKGKLGGRT-QEI--SRLIGRSLRAGVDYTALGENTIE 113

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           I  ++ ++DG +  A + G+ +AL  A           G P+   V  I++G++ DG+  
Sbjct: 114 IDCDVLQADGGTRTAAITGAWIALHRAIEEGKTSGFIPGEPLKDSVCAISVGII-DGEAR 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG 499
           +   D+  +ED     D  V  T +G
Sbjct: 173 L---DLPYEEDVRAETDMNVVMTGTG 195


>gi|327543215|gb|EGF29649.1| protein containing Ribosomal protein S1, RNA binding domain
           [Rhodopirellula baltica WH47]
          Length = 897

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 613 ITDVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +T +P ++++ +G      VV VM FG F+       GL+H+S++S   V    + V+ G
Sbjct: 607 MTAMPSLSELKQGDQVIGVVVGVMPFGVFIELSPDCSGLIHVSRISDSYVEDLHEAVQVG 666

Query: 668 D--TVWVKLLDFDDRGKIKLS 686
           D  T WV   D   R ++ LS
Sbjct: 667 DVITAWVTGTDAKRR-RVALS 686


>gi|291224107|ref|XP_002732048.1| PREDICTED: hypothetical protein, partial [Saccoglossus kowalevskii]
          Length = 269

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + SI D+     +  G+V     FGAFV     ++GL+H SQ+    V +    +  
Sbjct: 185 RKGVMSINDL-RSGDVLTGRVENATHFGAFVDIGVGQNGLIHTSQMP-HYVLQNGTPLGP 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+++ D +RG+I L +
Sbjct: 243 GDKVKVKVMNVDVNRGRIGLQL 264


>gi|109947059|ref|YP_664287.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba]
 gi|109714280|emb|CAJ99288.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba]
          Length = 552

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD + VK+L  
Sbjct: 370 QVGDVIEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428

Query: 678 DDR-GKIKLSMK 688
           + +  K+ LS K
Sbjct: 429 NKKDKKVSLSAK 440



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++E ++E++ S   V        G V ++  FG FV   G  +GLVH S++S +      
Sbjct: 189 QLEISKELLESAEPVL-------GIVRQIAPFGVFVEAKGI-EGLVHYSEISHKGPVNPE 240

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              KEGD V+VK + +D ++ ++ LS+K
Sbjct: 241 KYYKEGDEVYVKAIAYDEEKRRLSLSIK 268


>gi|299822051|ref|ZP_07053938.1| general stress protein 13 [Listeria grayi DSM 20601]
 gi|299816679|gb|EFI83916.1| general stress protein 13 [Listeria grayi DSM 20601]
          Length = 117

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  +  +GAFV       GLVHIS+++   V    D ++    V V++LD 
Sbjct: 5   KVGDVVTGKVTGIQAYGAFVALDEHTQGLVHISEITHGFVKDIHDFLELEQEVKVRILDI 64

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +  KI LS++  ++N 
Sbjct: 65  DSEANKISLSIRATEENN 82


>gi|251783080|ref|YP_002997383.1| hypothetical protein SDEG_1686 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391710|dbj|BAH82169.1| S1-type RNA-binding domain [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127830|gb|ADX25127.1| hypothetical protein SDE12394_08435 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 119

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  +  +GAFV       GL+HIS++ T  +   + ++  GD V V+++D D+   K 
Sbjct: 9   GTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNINQLLTIGDKVLVQVVDVDEFTHKA 68

Query: 684 KLSMKVVDQN 693
            LS++ ++++
Sbjct: 69  SLSLRTLEED 78


>gi|254477028|ref|ZP_05090414.1| ribosomal protein S1 [Ruegeria sp. R11]
 gi|214031271|gb|EEB72106.1| ribosomal protein S1 [Ruegeria sp. R11]
          Length = 559

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DGAKRRVSLGLKQTMRN 357


>gi|163739053|ref|ZP_02146466.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis BS107]
 gi|161387858|gb|EDQ12214.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis BS107]
          Length = 559

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DGAKRRVSLGLKQTMRN 357


>gi|322412402|gb|EFY03310.1| hypothetical protein SDD27957_08525 [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 119

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  +  +GAFV       GL+HIS++ T  +   + ++  GD V V+++D D+   K 
Sbjct: 9   GTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNINQLLAIGDKVLVQVVDVDEFTHKA 68

Query: 684 KLSMKVVDQN 693
            LS++ ++++
Sbjct: 69  SLSLRTLEED 78


>gi|218188559|gb|EEC70986.1| hypothetical protein OsI_02640 [Oryza sativa Indica Group]
          Length = 361

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V K+  +GA V   G  R GL+HIS +S  RV   SD++K  + V V ++  +  
Sbjct: 289 LLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVP 348

Query: 681 GKIKLSM 687
            KI LS+
Sbjct: 349 DKIALSL 355


>gi|291320611|ref|YP_003515876.1| hypothetical protein MAGa7190 [Mycoplasma agalactiae]
 gi|290752947|emb|CBH40922.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 721

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +G V  + DFG FV+    +  L+HIS++    T  VA   D+VK GD V +++++ +
Sbjct: 646 ILEGSVQNITDFGIFVYIGIKQAVLIHISKMKKTPTHYVAHPKDLVKTGDVVTLEIIEIN 705


>gi|260466645|ref|ZP_05812833.1| RNA binding S1 domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029651|gb|EEW30939.1| RNA binding S1 domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 773

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +G V  V  FGAF+     +DGLVH+SQL+   +    +VVK G
Sbjct: 655 LLEGTVTNVAAFGAFIDIGVHQDGLVHVSQLADRFIKDAHEVVKAG 700


>gi|163741706|ref|ZP_02149096.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis 2.10]
 gi|161384879|gb|EDQ09258.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis 2.10]
          Length = 553

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 334

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DGAKRRVSLGLKQTMRN 351


>gi|116753730|ref|YP_842848.1| translation initiation factor IF-2 subunit alpha [Methanosaeta
           thermophila PT]
 gi|116665181|gb|ABK14208.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanosaeta thermophila PT]
          Length = 257

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   +    V +V+DFGAFV      D  G +HIS++++  +    D V+EG  +  K+
Sbjct: 7   PEPGDLVVCTVDQVLDFGAFVTLDEYVDKKGFIHISEVASGWIKYIRDHVREGQKIVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L+ D  +  I LS+K V+++
Sbjct: 67  LNVDKSKHHIDLSLKDVNEH 86


>gi|146296896|ref|YP_001180667.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410472|gb|ABP67476.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 662

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ID D  +   S      +A  + I+   +  + NK Y G + ++   G  V+F G R 
Sbjct: 440 VDIDTDKKIAFGSRKFLLRQAQEKKIQQAIESLDFNKDYDGVIAEIRQKGIVVNFEGLR- 498

Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           G V  S++S ++R+     + K G+ V V+++D D + K I LS+K
Sbjct: 499 GFVPASEISYSKRIEDVKKLFKVGEQVKVRVIDIDKQKKQIYLSIK 544


>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
          Length = 269

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +  +++ +D  D +  R I  Q G++ +  GS+    GDT+ IV V    RE    +
Sbjct: 30  RDALKGQELEVDACDGQ--RKIYLQTGVITQAKGSAYIEIGDTKVIVSV-FDPREIPNRI 86

Query: 364 D-SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           D  L G    +F   Y    C       M   +  E     + R+A+   +       + 
Sbjct: 87  DYGLKGEVYCEF--KYAPFSCKK---RMMHQQNNEEKQSSDIMRKALESTVCLHELPNFQ 141

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + + + + E DGS+  A +    +AL  AGVP+   +  + +G V++G
Sbjct: 142 VDVYAMVLEEDGSALSAAIIAGGVALTLAGVPMYDQITSVTLG-VRNG 188


>gi|269797563|ref|YP_003311463.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
 gi|269094192|gb|ACZ24183.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
          Length = 133

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   V   + ++K  D V VK+L  
Sbjct: 4   EVGNIIDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYVEDINTLLKVEDPVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
           D   KI LS++
Sbjct: 64  DGN-KIGLSIR 73


>gi|156058222|ref|XP_001595034.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980]
 gi|154700910|gb|EDO00649.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1789

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            V ++  G++ KV DFG F+   G+ +  GL H S+++ +RV     +  +GD V   +L 
Sbjct: 1313 VGQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDGDEVKAIVLK 1372

Query: 677  FD-DRGKIKLSMK 688
             D ++ +I  SMK
Sbjct: 1373 MDPEKKRISFSMK 1385


>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
 gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
          Length = 283

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 21/143 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVG 71
           R L +  G + R +DG+ L + G T V+A V  +  +  +D  D   L VN +    A  
Sbjct: 38  RELSIRVG-VVRTADGSSLVSLGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPAASP 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI----------INVMQHD 121
            I  G       P EN I I+R++DR+IR      +K+ + V           I V+ HD
Sbjct: 97  DIEPG------PPDENAIEIARVVDRAIRHSGFLNFKSLSIVTGRHAWFLWVDIYVLNHD 150

Query: 122 LESSPHVVSMVAASAALMLSGLP 144
              +    S +AA  ALM + LP
Sbjct: 151 --GNLVDASTIAAITALMNTALP 171


>gi|315453859|ref|YP_004074129.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179]
 gi|315132911|emb|CBY83539.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179]
          Length = 556

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 18/109 (16%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR----SITDVP--------EVNKIYKG 625
           V+  G  +++D +  VKI      EI++    +R     ++D P         V  + +G
Sbjct: 327 VKHPGDYLSVDQEIDVKII-----EIDSKNRRLRVSLKQLSDKPFNEFVSKHRVGDLVEG 381

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +VV + DFGAFV+  G  DGL+H      E   K  D  K GDTV  K+
Sbjct: 382 KVVSLTDFGAFVNLGGV-DGLLHNKDAFWEADKKCVDHFKVGDTVQAKI 429



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   ++ G V  V  FG FV   G  +GLVH S+++       +   +EGD V VK + +
Sbjct: 202 ESQAVHTGVVKSVTGFGIFVEVNGV-EGLVHYSEITHRGSTNPAKHFREGDEVQVKAIAY 260

Query: 678 D-DRGKIKLSMK 688
           D ++ ++ LS+K
Sbjct: 261 DPEKKRLSLSIK 272


>gi|148377886|ref|YP_001256762.1| hypothetical protein MAG_6230 [Mycoplasma agalactiae PG2]
 gi|148291932|emb|CAL59323.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 720

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKLLDFD 678
           I +G V  + DFG FV+    +  L+HIS++    T  VA   D+VK GD V +++++ +
Sbjct: 646 ILEGSVQNITDFGIFVYIGIKQAVLIHISKMKKTPTHYVAHPKDLVKTGDVVTLEIIEIN 705


>gi|119900252|ref|YP_935465.1| ribonuclease PH [Azoarcus sp. BH72]
 gi|166228264|sp|A1KCM3|RNPH_AZOSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119672665|emb|CAL96579.1| ribonuclease PH [Azoarcus sp. BH72]
          Length = 239

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 32/181 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP++L T R  R ++G+VL  +G+T VL T   + ++     G+    +T  Y       
Sbjct: 12  RPVRL-TRRYTRHAEGSVLVEFGDTRVLCTASVEEAVPPFLKGKGRGWVTAEY------- 63

Query: 71  GKIPGGYLRRESRP------TENEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDL 122
           G +P     R +R       T     I R+I RS+R +       E QV+I  +V+Q D 
Sbjct: 64  GMLPRATHTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDCDVLQAD- 122

Query: 123 ESSPHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
                  S+  A  AL   L GL         P    V    V  ++G  VL+    ED 
Sbjct: 123 -GGTRTASITGAYVALHDALEGLVAAGKLAANPMTDFVAAISVGIVDGVPVLDLDYTEDS 181

Query: 172 G 172
           G
Sbjct: 182 G 182


>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
           vulgare]
          Length = 240

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  S     L+R HGS+ + +GDT  ++    G R   +      G       +   + 
Sbjct: 16  LRAYSCTRNPLERAHGSARWAQGDT-VVLAAVYGPRPGTR-----KGENPEKASLEVVWK 69

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P  TG++ R      +E  +    +R +  +   T     T  I+ ++   DGS     +
Sbjct: 70  P-KTGQIGR------QEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLLPCAI 122

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL---GHMDF 491
             S  AL+ AG+P+      I  G++ DG   +IL     +E  L    H+ F
Sbjct: 123 NASCAALVFAGIPMKHLAVAIGCGVLPDGS--VILDTSKAEEQQLKSFAHLVF 173


>gi|226225422|ref|YP_002759528.1| transcription accessory protein [Gemmatimonas aurantiaca T-27]
 gi|226088613|dbj|BAH37058.1| transcription accessory protein [Gemmatimonas aurantiaca T-27]
          Length = 791

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 602 EIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           E  A RE I+  +D+ P +  + +G V  ++ FGAFV     +DGLVH+SQLS   +   
Sbjct: 635 EPPAFREDIQKPSDLLPGM--VLEGVVTNIVAFGAFVDIGVHQDGLVHVSQLSDRYIKDA 692

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +DVVK G  V V + + D  R +I LSM+
Sbjct: 693 NDVVKVGQKVKVTVQNVDLPRNRIALSMR 721


>gi|156373883|ref|XP_001629539.1| predicted protein [Nematostella vectensis]
 gi|156216542|gb|EDO37476.1| predicted protein [Nematostella vectensis]
          Length = 1175

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 22/128 (17%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           +++AK+  L + NE          +LG +T  VEI A  P+  R +IG GG  IR + E 
Sbjct: 608 VEKAKKQLLELTNEK---------ELGSYT--VEIRA-KPEHHRFLIGRGGASIRKVREN 655

Query: 581 TGAKVNI----DDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           TGA++      D+D  +         +EAA+ E+++SI D   ++ I +G+V   +D   
Sbjct: 656 TGARIVFPAAKDEDKELITIIGKQEAVEAAKDELLKSIKD---LDNICEGEV--HVDPKW 710

Query: 636 FVHFCGAR 643
             HF   R
Sbjct: 711 HRHFVAKR 718



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASSSLAEIEAAREMIRSITD 615
           +NVIG GG  I+ I E+T  K+ +  +G+   V I +   A++EAARE I +I +
Sbjct: 493 KNVIGRGGTTIKKIREETDTKIELPAEGSDSDVIIITGHKAQVEAAREKILAIQN 547


>gi|186681340|ref|YP_001864536.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186463792|gb|ACC79593.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
          Length = 300

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G+V  +  FG FV   G    L+HI Q+S + +     V K G  +   ++D 
Sbjct: 197 ELGQLVEGKVTGIKPFGVFVDLNGM-GALLHIKQVSQKFIDSLEKVFKVGQPIKAVIIDL 255

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           D+ +G++ LS +V++   G+
Sbjct: 256 DEGKGRVALSTRVLENFPGE 275


>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
 gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
          Length = 250

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 20/164 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++  R    + G ++   GS+    GDT+ IV V  G RE ++  ++ S   R 
Sbjct: 27  RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSV-FGPRESKK-AEAFSDAGRL 84

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA-------QFP-YTLR 424
           +  + Y    C+         P R ++G      R +  +L ++         FP  T+ 
Sbjct: 85  NCNVKY----CS------FATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVD 134

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + + + +S G      V  +SLAL DAG+ +   VA +++  ++
Sbjct: 135 VFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVSVSSIQ 178


>gi|255657266|ref|ZP_05402675.1| ribonuclease PH [Clostridium difficile QCD-23m63]
 gi|296451893|ref|ZP_06893610.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296879712|ref|ZP_06903687.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
 gi|296259275|gb|EFH06153.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296429301|gb|EFH15173.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
          Length = 449

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +       
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTGWINA 62

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH-----GRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            Y+ LP AT +  ++   SR +I        RL  RAI  V+        T+ +  ++ +
Sbjct: 63  EYSMLPRATQQ-RKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQ 121

Query: 432 SDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+ +A            +PI+  V+ I++G+V +G   +   D+ 
Sbjct: 122 ADGGTRTASITGAFVAVAEAIYKLYKAKTVKEMPITNFVSAISVGIV-NGTHML---DLC 177

Query: 481 GDEDHLGHMDFKVAGTD 497
            +ED    +D  +  TD
Sbjct: 178 YEEDSKAQVDMNIIMTD 194


>gi|86355758|ref|YP_467650.1| 30S ribosomal protein S1 [Rhizobium etli CFN 42]
 gi|86279860|gb|ABC88923.1| 30S ribosomal protein S1 [Rhizobium etli CFN 42]
          Length = 567

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b]
 gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 23/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+ +   GS L   G+T  +   +L    +++    L G  R
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASL----EDKPPPWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ LAL D              P+   VA ++ G+   G   +I 
Sbjct: 117 DVLQADGGTRTAAISGAWLALHDCFQWMRSRSIIKENPLRDHVAAVSCGVCDAGP--VID 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D   D       +F + G   G+  +Q   +    +E  +   L  A+ G +  L EM 
Sbjct: 175 LDYGEDSTAKTDANFVITG-GGGLVEVQSTAEAAVFTEADLSAMLSLARAG-IGKLIEMQ 232

Query: 537 KV 538
           K 
Sbjct: 233 KA 234


>gi|284053737|ref|ZP_06383947.1| ribonuclease PH [Arthrospira platensis str. Paraca]
          Length = 241

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 22/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R +  ++   Q    S L   G+TQ +  VT+           L  T + 
Sbjct: 5   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTI----QPGVPRFLQDTGKG 60

Query: 373 DFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     +   S R     RL  R++   +   A    T+ + +++ 
Sbjct: 61  WLTAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A             PI   +A I++G++  G+  +   D+
Sbjct: 121 QADAGTRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQIAAISVGMMH-GEALL---DL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D  GI  +Q   +   ++ N +   L  A++G   +     +V
Sbjct: 177 NYQEDVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 236

Query: 539 L 539
           L
Sbjct: 237 L 237


>gi|305665496|ref|YP_003861783.1| putative RNA binding protein with S1 RNA-binding domain [Maribacter
           sp. HTCC2170]
 gi|88710252|gb|EAR02484.1| putative RNA binding protein with S1 RNA-binding domain [Maribacter
           sp. HTCC2170]
          Length = 707

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A++    + I+SI D+ E  ++  G V  + +FG FV       GL+H+S L+   V   
Sbjct: 619 AKVFTFNQNIKSIADLHE-GQLLPGIVNNITNFGCFVDIGIKESGLIHVSNLADAFVKDV 677

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           ++ V     + VK+LD D  R +I+L +
Sbjct: 678 NEHVSLHQQIIVKVLDIDVPRKRIQLKL 705


>gi|320352955|ref|YP_004194294.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
 gi|320121457|gb|ADW17003.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
          Length = 235

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R  S + G+     GS L   G+T  +  VT+  R      D   G        
Sbjct: 6   RSADALRPFSVEYGVQPHADGSVLIRMGNTHVLCGVTVEDRVPPFLKDKGQGW----ITA 61

Query: 377 HYNFLPCAT---GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
            Y  LPCAT   G    +   S R     RL  R++  ++  +    +TLR+  ++  +D
Sbjct: 62  EYGMLPCATHSRGRREAVSGLSGRTHEIQRLIGRSLRMMVDLSLLGEHTLRVDCDVLNAD 121

Query: 434 GSSSMATVCGSSLAL 448
           G +  A++ G +LA+
Sbjct: 122 GGTRCASITGGALAV 136


>gi|190889734|ref|YP_001976276.1| 30S ribosomal protein S1 [Rhizobium etli CIAT 652]
 gi|190695013|gb|ACE89098.1| 30S ribosomal protein S1 [Rhizobium etli CIAT 652]
          Length = 567

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|20092492|ref|NP_618567.1| DNA-directed RNA polymerase subunit E' [Methanosarcina acetivorans
           C2A]
 gi|19917756|gb|AAM07047.1| DNA-directed RNA polymerase, subunit E [Methanosarcina acetivorans
           C2A]
          Length = 194

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +I  +PE+ +I +G+VV+ + FG FV   G  DGL+H+SQ++ + ++
Sbjct: 74  AIMFIPELQEIIEGEVVEAVGFGVFVGM-GPMDGLLHVSQITDDFIS 119


>gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39]
          Length = 242

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 22/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R +  ++   Q    S L   G+TQ +  VT+           L  T + 
Sbjct: 6   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTI----QPGVPRFLQDTGKG 61

Query: 373 DFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     +   S R     RL  R++   +   A    T+ + +++ 
Sbjct: 62  WLTAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVL 121

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A             PI   +A I++G++  G+  +   D+
Sbjct: 122 QADAGTRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQIAAISVGMMH-GEALL---DL 177

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D  GI  +Q   +   ++ N +   L  A++G   +     +V
Sbjct: 178 NYQEDVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 237

Query: 539 L 539
           L
Sbjct: 238 L 238


>gi|322391661|ref|ZP_08065129.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
 gi|321145472|gb|EFX40865.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
          Length = 120

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G++  +  +GAFV       GL+HIS++ T  +    DV+K G+ V V+++DFD+  GK 
Sbjct: 9   GRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIHDVLKVGEEVQVQVVDFDEFTGKA 68

Query: 684 KLSMKVVDQ 692
            LS++ +++
Sbjct: 69  SLSIRTLEE 77


>gi|148377474|ref|YP_001256350.1| ribonuclease R [Mycoplasma agalactiae PG2]
 gi|148291520|emb|CAL58906.1| Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II)
           [Mycoplasma agalactiae PG2]
          Length = 729

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVP-------EVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           KIA+ + A  E A ++ R + D+        ++N  ++GQV  +  FG F+ F    D +
Sbjct: 591 KIAAMNSASEENAVQLERDVNDLKFAEYFKSKINSEFEGQVFGITKFGMFIQFDNKTDAM 650

Query: 647 VHISQL 652
           VHIS +
Sbjct: 651 VHISNI 656


>gi|90655436|gb|ABD96277.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
           Synechococcus GOM 3M9]
          Length = 423

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +GQV  V  +G F+   G   GL+H S ++   +    +V  +GD V   + + 
Sbjct: 314 EVGQLVEGQVAAVKPYGLFIDLGGI-SGLLHQSMITNGSLRSIREVFDQGDRVKAMITEL 372

Query: 678 DD-RGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ +V
Sbjct: 373 DPGRGRIGLNTALLEGPPGELLV 395


>gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594]
 gi|122544511|sp|Q2NAJ7|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ + G  +   GS L   GDT+ +   ++    +E+    L G  +
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASV----EERLPPWLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       A   ++ G      RL  R++  V+         + +  
Sbjct: 57  GWVTGEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
           ++ ++DG +  A++ G+ +A       LM+ G     PI+  +A I+ G+
Sbjct: 117 DVIQADGGTRTASISGAWIALRLAVSGLMEQGQIKDDPITGKIAAISCGI 166


>gi|47093367|ref|ZP_00231134.1| ribosomal protein S1, putative [Listeria monocytogenes str. 4b
           H7858]
 gi|47018238|gb|EAL09004.1| ribosomal protein S1, putative [Listeria monocytogenes str. 4b
           H7858]
          Length = 233

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKE-GDVIEGTVQRLANFGAFVDIGGV-DGLVH 215

Query: 649 ISQLSTERVAKTSDVVKE 666
           ISQ+S + +A   + ++E
Sbjct: 216 ISQISYKHIATPQEALEE 233


>gi|325957967|ref|YP_004289433.1| translation initiation factor 2 subunit alpha [Methanobacterium sp.
           AL-21]
 gi|325329399|gb|ADZ08461.1| Translation initiation factor 2 subunit alpha [Methanobacterium sp.
           AL-21]
          Length = 259

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAF--VHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + P+   +  G V KV+++GAF  +     ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRMRKEWPDEGDLVVGTVHKVLNYGAFGSLEEYDGKEAFIHISEVSSGWVKNIRDYVRE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV--DQNTGK 696
              +  ++L  +  +G + +S+K +  DQ T K
Sbjct: 61  NQKIVARVLRVNPKKGHVDVSLKRIREDQRTRK 93


>gi|78357359|ref|YP_388808.1| RNA-binding domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219764|gb|ABB39113.1| RNA binding domain protein, S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 740

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + ++ D+ E   +  G V  V  FGAFV     +DGLVHISQL+ + V   ++VV+    
Sbjct: 659 VHTLDDLQE-GMVLPGVVTNVTAFGAFVDIGVHQDGLVHISQLADKFVRDPAEVVRVRQQ 717

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V++L+ D  R +I LSMK
Sbjct: 718 VQVRVLEVDHKRRRISLSMK 737


>gi|313678768|ref|YP_004056508.1| S1 RNA binding domain-containing protein [Mycoplasma bovis PG45]
 gi|312950619|gb|ADR25214.1| S1 RNA binding domain protein [Mycoplasma bovis PG45]
          Length = 719

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKL 674
           +V  I  G V  + DFG FV+    +  LVHIS++    T  VA   D+VK GD V +++
Sbjct: 642 KVGMILDGSVQNITDFGIFVYIGIKQAVLVHISKMKKSPTHYVAHPKDLVKPGDVVTLEI 701

Query: 675 LDFD 678
           ++ +
Sbjct: 702 IEIN 705


>gi|332716826|ref|YP_004444292.1| 30S ribosomal protein S1 [Agrobacterium sp. H13-3]
 gi|325063511|gb|ADY67201.1| 30S ribosomal protein S1 [Agrobacterium sp. H13-3]
          Length = 566

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|167765732|ref|ZP_02437785.1| hypothetical protein CLOSS21_00221 [Clostridium sp. SS2/1]
 gi|167712584|gb|EDS23163.1| hypothetical protein CLOSS21_00221 [Clostridium sp. SS2/1]
          Length = 713

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KG V  V+DFGAFV     +DGLVHISQ++
Sbjct: 647 KGTVRNVIDFGAFVDIGVHQDGLVHISQMA 676


>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
 gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 257

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT----LGTREDEQYVDSLS 367
           +R+DGR    +R I AQ+       GSS    G T+ + VV      G R          
Sbjct: 13  LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIV 426
           G Q  +  +  N +      V R     RR  G        +H     T  FP+ T+ I 
Sbjct: 73  GGQSKNAEVAVNIVIAGFSSVDR----KRRGRGDN------LH-----THLFPHSTINIS 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
             +   DGS   A +  ++LA +DAG+P++  VA    G
Sbjct: 118 LHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAG 156


>gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
 gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R +S          GS L   G+T+ +   T+    +      + G  +
Sbjct: 1   MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATV----ESGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP +T      E SR G    R +   RL  RA+   +   A    T+ I 
Sbjct: 57  GWINAEYGMLPRSTHTRNAREASR-GKQGGRTMEIQRLIARALRAAVDLKALGENTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             P+   +A I++G+ K       
Sbjct: 116 CDVIQADGGTRTASISGACVALVDALTHMRAKGMINSNPLKHMIAAISVGIYKGQ----A 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           +SD+   ED     D  V  T++G
Sbjct: 172 ISDLEYIEDSAAETDMNVILTETG 195


>gi|116249872|ref|YP_765710.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. viciae 3841]
 gi|241207043|ref|YP_002978139.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115254520|emb|CAK05594.1| putative 30S ribosomal protein S1 [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|240860933|gb|ACS58600.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 567

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|16041180|dbj|BAB69757.1| hypothetical protein [Macaca fascicularis]
          Length = 561

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--DDDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GA++    + +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGARITCVKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+ AAR +I
Sbjct: 179 TQKEVAAARHLI 190


>gi|209551601|ref|YP_002283518.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537357|gb|ACI57292.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 567

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|162451445|ref|YP_001613812.1| S1 RNA-binding domain-containing protein [Sorangium cellulosum 'So
           ce 56']
 gi|161162027|emb|CAN93332.1| S1 RNA binding domain protein [Sorangium cellulosum 'So ce 56']
          Length = 251

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 624 KGQVVKVMDFGAFVHFCGARD----GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           KG+V  V  +G FV   G       GLV  ++ +T R A        G  V  K+L+ D+
Sbjct: 135 KGKVTGVERYGVFVQIAGTSGRSGRGLVPTAETATPRSADLKKHFTVGQDVEAKILNVDE 194

Query: 680 RGKIKLSMKV--VDQNTGK 696
            GKI+LS+    VD+  G+
Sbjct: 195 SGKIRLSISALRVDEERGQ 213


>gi|332667406|ref|YP_004450194.1| Tex-like protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332336220|gb|AEE53321.1| Tex-like protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 710

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + +FGAF+       GLVH+SQ++   V    +VV     V V++++ D  R
Sbjct: 641 VLPGIVENITNFGAFIDIGIKEKGLVHVSQMANRFVKNPMEVVTLRQEVSVRVVEVDIAR 700

Query: 681 GKIKLSMK 688
            +++LSMK
Sbjct: 701 KRVQLSMK 708


>gi|295293739|gb|ADF88266.1| RNA-binding S1 domain-containing protein [Aphanizomenon sp. 10E6]
          Length = 300

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G++  +  FG FV F G    L+HI Q+S + +     + + G  +   ++D 
Sbjct: 197 EIGQLIEGKITGIKPFGVFVDFNGV-SALLHIKQVSQKFIDSLEKIFQIGQPIKAVIIDL 255

Query: 678 DD-RGKIKLSMKVVDQNTGKPI 698
           D+ +G++ +S ++++   G+ +
Sbjct: 256 DEGKGRVAISTRILENFPGEVV 277


>gi|291558933|emb|CBL37733.1| Transcriptional accessory protein [butyrate-producing bacterium
           SSC/2]
          Length = 713

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KG V  V+DFGAFV     +DGLVHISQ++
Sbjct: 647 KGTVRNVIDFGAFVDIGVHQDGLVHISQMA 676


>gi|99080041|ref|YP_612195.1| 30S ribosomal protein S1 [Ruegeria sp. TM1040]
 gi|99036321|gb|ABF62933.1| SSU ribosomal protein S1P [Ruegeria sp. TM1040]
          Length = 558

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LESVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DGAKRRVSLGLKQTMRN 357


>gi|299066246|emb|CBJ37430.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CMR15]
          Length = 238

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDT  +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  RA+  V   +A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  D           AG PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAHDAISVMRKKGQLAGEPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 173 LDLDYPEDSSCDTDMNVVMTGAG 195


>gi|300690924|ref|YP_003751919.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
 gi|299077984|emb|CBJ50625.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
          Length = 238

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDTQ +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTQVLCTASVLPKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  RA+  V   +A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  D           AG PI   VA +++G+V DG   +  
Sbjct: 117 DVLQADGGTRTASITGAFVAAHDAVSVMRGRGLLAGEPIRDFVAAVSVGVV-DGAPVL-- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 174 -DLDYPEDSACDTDMNVVMTGSG 195


>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
           NA1]
 gi|226740342|sp|B6YSE7|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
 gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 272

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 21/171 (12%)

Query: 297 DIQAKVVR---TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ A ++R     +L +  R+DGR  E  RD+  ++ ++++  GS+    G+TQ +V   
Sbjct: 5   EVMASIMRDHILALLKEGKRVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLV--- 61

Query: 354 LGTRED--EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            G + D  E + D     ++     +   +P A+      G P  R I   R+  R I  
Sbjct: 62  -GIKVDMGEPFPDL---PEKGVITTNVELVPLASPSFEP-GPPDERAIELARVVDRGIRE 116

Query: 412 V----LPQTAQFPYTL-RIV---SEITESDGSSSMATVCGSSLALMDAGVP 454
                L +    P  L R+V     + + DG+   A+  G+  ALM A +P
Sbjct: 117 SGAVELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMP 167


>gi|159186030|ref|NP_356542.2| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58]
 gi|159141164|gb|AAK89327.2| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58]
          Length = 566

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|242078463|ref|XP_002444000.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
 gi|241940350|gb|EES13495.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
          Length = 629

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL--GEFTP 551
           +  D+ I ++   + I G + ++  +AL     GRL I   +  V+         GE   
Sbjct: 253 SAPDAAIPSVHPSLSILGSTHHVPELALPADDHGRLPIYPSILPVIPTYSAPKCSGELEF 312

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           RV     P  +I  VIG GG  I+ I +++GA++++DD
Sbjct: 313 RV---LCPSGKIGLVIGRGGATIKNIRQESGARIDVDD 347


>gi|308081899|ref|NP_001183640.1| hypothetical protein LOC100502234 [Zea mays]
 gi|238013618|gb|ACR37844.1| unknown [Zea mays]
          Length = 541

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 548 EFTPRVEI-MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           E +P+V + + +P DQI  +IG GG++I+GI  +TGA++ +
Sbjct: 131 EISPQVTVRLLVPSDQIGCIIGKGGQIIQGIRSETGAQIRV 171


>gi|289808402|ref|ZP_06539031.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 112

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQ 246
           A  LSED +L A++FGH + + VI+AI+ L K   K     +P  ++      L   ++ 
Sbjct: 1   AELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVN----DALNARVAA 56

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
           + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+
Sbjct: 57  LAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANEL 101


>gi|319953398|ref|YP_004164665.1| tex-like protein [Cellulophaga algicola DSM 14237]
 gi|319422058|gb|ADV49167.1| Tex-like protein [Cellulophaga algicola DSM 14237]
          Length = 707

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I+SITD+ E   +  G V  + +FG FV       GL+HIS LS   V   ++ V   
Sbjct: 626 QHIKSITDLHE-GLVLPGIVNNITNFGCFVDIGIKESGLIHISNLSDTFVKDVNEHVSLQ 684

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             + VK+++ D  R +I+L+++
Sbjct: 685 QQITVKVMEVDVARKRIQLALQ 706


>gi|296472696|gb|DAA14811.1| programmed cell death 11 [Bos taurus]
          Length = 1874

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G FV F     GL   + LS + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 732 GFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 791

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 792 LLSLRLSDCTLG 803


>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
           exoribonuclease [Medicago truncatula]
          Length = 241

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 32/179 (17%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +G+T+ +  V  G +         +GT++N
Sbjct: 5   RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-------FPYTLRI 425
           +             E + +    +   GH   A R    +L +T +       +P T   
Sbjct: 55  E-----------NPEKASIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTS 103

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           V  +   DG+     +  +  AL+DAG+P+      I   +    D+  I+ D S  E+
Sbjct: 104 VI-VVHDDGALLPCAINAACAALVDAGIPLRHLAVAICCSVT---DNNSIILDPSKKEE 158


>gi|118579188|ref|YP_900438.1| 30S ribosomal protein S1 [Pelobacter propionicus DSM 2379]
 gi|118501898|gb|ABK98380.1| SSU ribosomal protein S1P [Pelobacter propionicus DSM 2379]
          Length = 407

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLL 675
           PE      G V ++  FGAFV      DGL+HIS+L   +R++   +V+ EG  V VK+ 
Sbjct: 291 PE-GSFQSGTVARLTPFGAFVTLPCGLDGLIHISKLGGGKRISHPREVLSEGQAVEVKVE 349

Query: 676 DFD 678
             D
Sbjct: 350 GID 352


>gi|156120853|ref|NP_001095573.1| protein RRP5 homolog [Bos taurus]
 gi|224493288|sp|A7MB10|RRP5_BOVIN RecName: Full=Protein RRP5 homolog; AltName: Full=Programmed cell
           death protein 11
 gi|154425541|gb|AAI51278.1| PDCD11 protein [Bos taurus]
          Length = 1874

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G FV F     GL   + LS + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 732 GFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 791

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 792 LLSLRLSDCTLG 803


>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 230

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           ++ R DGR +  +R ++A+ G+L R  GS+ F++G+T  +  V            SL   
Sbjct: 2   EETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVY-----GPAPAKSLRME 56

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +     +  +F P  +G  S   A S        L RR++  V+ ++ ++P T+  V   
Sbjct: 57  RSEGATLDVSFKP-ESGITSSADAESE------ALLRRSLEEVVLRS-RYPRTVVSVIIQ 108

Query: 430 TES-DGSSSMATVCGSSLALMDAGVPIS 456
               DG+   A +  +++AL++AGV ++
Sbjct: 109 VIVDDGAVLSAALNAATMALLNAGVEMT 136


>gi|159043574|ref|YP_001532368.1| 30S ribosomal protein S1 [Dinoroseobacter shibae DFL 12]
 gi|157911334|gb|ABV92767.1| ribosomal protein S1 [Dinoroseobacter shibae DFL 12]
          Length = 558

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+++  + +  +I
Sbjct: 202 GVVENITEYGAFVDLGGV-DGLLHVTDMAWRRVNHPSEILAIGETVKVQVIKINKETHRI 260

Query: 684 KLSMK 688
            L MK
Sbjct: 261 SLGMK 265



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LDSVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DTVKRRVSLGLKQTMRN 357


>gi|238019643|ref|ZP_04600069.1| hypothetical protein VEIDISOL_01517 [Veillonella dispar ATCC 17748]
 gi|237863684|gb|EEP64974.1| hypothetical protein VEIDISOL_01517 [Veillonella dispar ATCC 17748]
          Length = 133

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   V   + V+K  D V VK+L  
Sbjct: 4   EVGNIIDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYVEDINTVLKVEDPVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
           +   KI LS++
Sbjct: 64  EG-NKIGLSIR 73


>gi|222084305|ref|YP_002542834.1| ribosomal protein S1 [Agrobacterium radiobacter K84]
 gi|221721753|gb|ACM24909.1| ribosomal protein S1 [Agrobacterium radiobacter K84]
          Length = 567

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVDGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +++  G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EILSIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|55377803|ref|YP_135653.1| nuclease [Haloarcula marismortui ATCC 43049]
 gi|55230528|gb|AAV45947.1| putative nuclease [Haloarcula marismortui ATCC 43049]
          Length = 726

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L E +A  E   S  D   V++ Y+G V    +FG FV    +  GL+H S+L     + 
Sbjct: 18  LHEEDALFEFRGSRADQLSVDRYYRGSVDGFAEFGVFVDIGDSVTGLLHRSELDQRLDSL 77

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D    GDTV+V++ +  D G + L   +
Sbjct: 78  DWD---SGDTVYVQVKNVRDNGNVDLGWSI 104


>gi|259415557|ref|ZP_05739478.1| ribosomal protein S1 [Silicibacter sp. TrichCH4B]
 gi|259348787|gb|EEW60549.1| ribosomal protein S1 [Silicibacter sp. TrichCH4B]
          Length = 558

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 281 LESVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEI 340

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 341 DGAKRRVSLGLKQTMRN 357


>gi|149916116|ref|ZP_01904638.1| 30S ribosomal protein S1 [Roseobacter sp. AzwK-3b]
 gi|149809971|gb|EDM69820.1| 30S ribosomal protein S1 [Roseobacter sp. AzwK-3b]
          Length = 562

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + +FG F+   G  DG+VH+S LS  ER  +     K+GD V   + + D ++ 
Sbjct: 373 EGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERGEEAIQNYKKGDIVKAVVSEVDVEKE 432

Query: 682 KIKLSMKVVD 691
           +I LS+K +D
Sbjct: 433 RISLSIKALD 442



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 284 VHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDQA 343

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 344 KRRVSLGLKQTQRN 357


>gi|254415806|ref|ZP_05029564.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177512|gb|EDX72518.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 323

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S + +     V    D + V ++D D +RG+I LS K ++
Sbjct: 210 YGAFIDIGGV-SGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLE 268

Query: 692 QNTGKPI 698
              G  I
Sbjct: 269 PEPGDMI 275


>gi|308810054|ref|XP_003082336.1| transcriptional accessory protein (ISS) [Ostreococcus tauri]
 gi|116060804|emb|CAL57282.1| transcriptional accessory protein (ISS) [Ostreococcus tauri]
          Length = 948

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           E   R   +   P  +R+++G      +   E+ GA+ +          + SL    AAR
Sbjct: 821 ELATRASSLGCHPLTLRDIVGELATPGKDARERPGARAS----------ARSLRATSAAR 870

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
              R+I D+    +I    V  V+ FG F+     RD L+H+S L       + DVV  G
Sbjct: 871 SA-RTIDDLKPGEEITDAVVRNVVPFGVFLDLGIGRDALLHVSALPR----GSRDVVV-G 924

Query: 668 DTVWVKLLDFDDRGKIKLSMKV 689
           D + V+++D  DR + ++S+ +
Sbjct: 925 DLLDVRVVDV-DRARARVSVTL 945


>gi|317969606|ref|ZP_07970996.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0205]
          Length = 448

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +GQVV +  +G FV   G   GL+H S ++  ++    +V  +GD V   + + 
Sbjct: 339 EVGQLVEGQVVAIKPYGLFVDLGGI-SGLLHHSVITGGQMRDLREVFGQGDRVKALITEL 397

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 398 DPGRGRIALNTALLEGQPGELLI 420


>gi|46339|emb|CAA30404.1| unnamed protein product [Sinorhizobium meliloti]
          Length = 568

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 603 IEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +E +R   RS I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S
Sbjct: 180 LEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVKHPS 238

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++   G  V V+++  + +  +I L MK ++ +
Sbjct: 239 EIQNIGQQVKVQIIRINQETHRISLGMKQLESD 271


>gi|56550910|ref|YP_161749.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260753398|ref|YP_003226291.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|61215796|sp|Q5NRL6|RNPH_ZYMMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56542484|gb|AAV88638.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552761|gb|ACV75707.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS L   GDT+ +V  +L    +E+    L G  +
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASL----EERLPSWLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++   +         + I  
Sbjct: 57  GWVTAEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL 448
           ++ ++DG +  A++ G  +AL
Sbjct: 117 DVLQADGGTRTASISGGWVAL 137


>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
          Length = 241

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 16/200 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R + A VG+     GS+ F +GDT+ + +V    +   +  D+  G   
Sbjct: 10  LREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGVGKAGDA--GKVV 67

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR--AIHPVLPQTAQFPYT-LRIVSE 428
            DF M       A    ++   P R +  +  L  +  +       T  +P + + I  +
Sbjct: 68  CDFEM-------AAFSTTQRRKPLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQ 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG      +   +LALMDAGV ++  V      ++ DG + +   DI+  E     
Sbjct: 121 VLQADGGVLAVAINAVTLALMDAGVAMTDFVCACTASVI-DGTNVL---DINHYEASAQG 176

Query: 489 MDFKVAGTDSGITAMQMDMK 508
            +  +A   S  T +  +MK
Sbjct: 177 PELTIAVLPSSSTIVMAEMK 196


>gi|255030816|ref|ZP_05302767.1| hypothetical protein LmonL_19961 [Listeria monocytogenes LO28]
          Length = 105

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +G V  V+DFGAFV     +DGLVHIS+LS   V    D
Sbjct: 33  QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMD 71


>gi|222618762|gb|EEE54894.1| hypothetical protein OsJ_02412 [Oryza sativa Japonica Group]
          Length = 402

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V K+  +GA V   G  R GL+HIS +S  RV   SD++K  + V V ++  +  
Sbjct: 253 LLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVP 312

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS+  ++   G
Sbjct: 313 DKIALSISDLESTPG 327


>gi|170077576|ref|YP_001734214.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
 gi|169885245|gb|ACA98958.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
          Length = 326

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G   GL+HIS++S + +     V +  D + V ++D D +RG+I LS K ++
Sbjct: 210 YGAFIDIGGV-SGLLHISEISHDHIDTPHSVFQVNDELKVMIIDLDAERGRISLSTKQLE 268

Query: 692 QNTG 695
              G
Sbjct: 269 PEPG 272


>gi|297464489|ref|XP_001252893.3| PREDICTED: programmed cell death 11-like [Bos taurus]
          Length = 1301

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G FV F     GL   + LS + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 732 GFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 791

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 792 LLSLRLSDCTLG 803


>gi|241762326|ref|ZP_04760406.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373120|gb|EER62759.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 234

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS L   GDT+ +V  +L    +E+    L G  +
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASL----EERLPSWLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++   +         + I  
Sbjct: 57  GWVTAEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL 448
           ++ ++DG +  A++ G  +AL
Sbjct: 117 DVLQADGGTRTASISGGWVAL 137


>gi|149183719|ref|ZP_01862129.1| YdcI [Bacillus sp. SG-1]
 gi|148848578|gb|EDL62818.1| YdcI [Bacillus sp. SG-1]
          Length = 717

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L    V    D   V +  TVWV+  D   +G
Sbjct: 650 QGTVRNVVDFGAFVDIGVKQDGLVHISKLRKGFVKHPLDVVSVGDVVTVWVESADV-KKG 708

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 709 RVALSM 714


>gi|33151552|ref|NP_872905.1| transcription accessory protein tex-like protein [Haemophilus
           ducreyi 35000HP]
 gi|33147772|gb|AAP95294.1| transcription accessory protein tex-like protein [Haemophilus
           ducreyi 35000HP]
          Length = 772

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I D+ +V  + +G V  V +FGAFV     +DGLVHIS LS   V     V+K GD 
Sbjct: 649 VEEIKDL-KVGMLLEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVDDPHKVIKVGDV 707

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQ--NTGKP 697
           V VK+L+ D  R +I L+M++ +Q   T KP
Sbjct: 708 VKVKVLEVDIARKRIALTMRLDEQPSTTEKP 738


>gi|282850011|ref|ZP_06259393.1| putative general stress protein 13 [Veillonella parvula ATCC 17745]
 gi|294793392|ref|ZP_06758537.1| S1 RNA-binding domain protein [Veillonella sp. 6_1_27]
 gi|294795211|ref|ZP_06760345.1| S1 RNA-binding domain protein [Veillonella sp. 3_1_44]
 gi|282580200|gb|EFB85601.1| putative general stress protein 13 [Veillonella parvula ATCC 17745]
 gi|294454003|gb|EFG22378.1| S1 RNA-binding domain protein [Veillonella sp. 3_1_44]
 gi|294455823|gb|EFG24188.1| S1 RNA-binding domain protein [Veillonella sp. 6_1_27]
          Length = 133

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   +   + ++K  D V VK+L  
Sbjct: 4   EVGNIIDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYIEDINTLLKVEDPVKVKVLSI 63

Query: 678 DDRGKIKLSMK 688
           D   KI LS++
Sbjct: 64  DGN-KIGLSIR 73


>gi|148238988|ref|YP_001224375.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
 gi|147847527|emb|CAK23078.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
          Length = 403

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G V  V  +G F+   G   GL+H S ++   +    +V  +GDTV   + + 
Sbjct: 294 EVGQLVEGHVAAVKPYGLFIDLGGI-SGLLHQSMITGGSLRSLREVFDQGDTVKALITEL 352

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 353 DPGRGRIALNTAMLEGQPGELLI 375


>gi|317497036|ref|ZP_07955364.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895696|gb|EFV17850.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 596

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KG V  V+DFGAFV     +DGLVHISQ++
Sbjct: 535 KGTVRNVIDFGAFVDIGVHQDGLVHISQMA 564


>gi|77361698|ref|YP_341273.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588968|sp|Q3IJI0|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 237

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R ++          GS L   G+T+ +   T+    +      + G  +
Sbjct: 1   MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATV----ESGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G    R +   RL  RA+   +   A    T+ I 
Sbjct: 57  GWINAEYGMLPRATHTRNAREAAR-GKQGGRTMEIQRLIARALRAAVDLKALGENTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GVPISKP----VAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA       G+  S P    +A I++G+ K       
Sbjct: 116 CDVIQADGGTRTASISGACVALVDALTHMRAKGMINSNPLKYMIAAISVGIYKGQ----A 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           +SD+   ED     D  V  T++G
Sbjct: 172 ISDLEYIEDSAAETDMNVILTETG 195


>gi|227512137|ref|ZP_03942186.1| RNA binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227524134|ref|ZP_03954183.1| RNA binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227084531|gb|EEI19843.1| RNA binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227088712|gb|EEI24024.1| RNA binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 136

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           R + R + D+  +V    KG V  +  +G FV       GL+HIS+  +  V   + +  
Sbjct: 3   RVIYRRVLDLGLKVGMKVKGVVTGIQPYGVFVDLGNQNQGLIHISECQSGYVEDINQLFS 62

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMK 688
            G+TV   ++D D+  GKI LS +
Sbjct: 63  VGETVSSLIIDIDEYTGKISLSTR 86


>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
 gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
          Length = 260

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 25/229 (10%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V   ++   V  +ML +K R D R  + +RDIS +  ++    GS+    GDTQ IV V 
Sbjct: 5   VMSKLKKDYVYHLMLKEK-REDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVK 63

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI---- 409
           L  +  E + D+     +   +      P A+ +    G P    I   R+  R I    
Sbjct: 64  L--QVGEPFPDT---PDKGIIITSLELNPIASPDF-EAGPPKEDAIEIARVVDRGIRESG 117

Query: 410 ----HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
               + +     +  +T+ I   +   DG+   A   G+  ALM   +P      G  M 
Sbjct: 118 AIDLNKLCITEGEEVWTVFIDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGEDMM 177

Query: 466 L-VKDGDDFIILSDISG--------DEDHLGHMDFK-VAGTDSGITAMQ 504
           + V+D    I L DISG        +E+ +       V+  D  I+AMQ
Sbjct: 178 MPVRDIPVGISLVDISGELMVDPTYNEESVCDTKITVVSNQDGSISAMQ 226


>gi|149751261|ref|XP_001493239.1| PREDICTED: tudor and KH domain containing isoform 1 [Equus
           caballus]
          Length = 561

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID--DDGTVKIA-----SS 598
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D   +GT+ ++     S 
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 599 SLAEIEAAREMI 610
           +  E+  A+ +I
Sbjct: 179 TQKEVATAKHLI 190


>gi|326444390|ref|ZP_08219124.1| transcription accessory protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 786

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK G
Sbjct: 656 VLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPG 701


>gi|119493583|ref|ZP_01624247.1| ribonuclease PH [Lyngbya sp. PCC 8106]
 gi|119452573|gb|EAW33756.1| ribonuclease PH [Lyngbya sp. PCC 8106]
          Length = 241

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 28/217 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R  + +R +  ++   + +  S L   G+TQ I  VT+         DS  G    
Sbjct: 5   RLDDRKPDQLRPVHFELNYTRYSSASVLTKCGNTQVICNVTIQPGVPNFLKDSGQGW--- 61

Query: 373 DFMMHYNFLPCATGE--VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     +   S R     RL  R++   +        T+ I +++ 
Sbjct: 62  -LTAEYRMLPGATQQRHSRELMKLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS-- 477
           ++D  +  A++ G  +AL +A             PIS  +A I++GL+ +G+ ++ L+  
Sbjct: 121 QADAGTRTASITGGFVALANAFNKLVDKGELEKSPISHQIAAISVGLL-EGEPYLDLNYE 179

Query: 478 -DISGD-------EDHLGHMDFKVAGTDSGITAMQMD 506
            D++ D        D LG ++ +        T  Q++
Sbjct: 180 EDVAADVDCNIVMNDQLGMIELQGTAEAESFTRQQLN 216


>gi|294816048|ref|ZP_06774691.1| Transcription accessory protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294328647|gb|EFG10290.1| Transcription accessory protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 801

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK G
Sbjct: 671 VLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPG 716


>gi|257063633|ref|YP_003143305.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
 gi|256791286|gb|ACV21956.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
          Length = 240

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+D R    +R ++ + G+++   GS L   GDT  +   T+  R        + G ++
Sbjct: 4   TRVDNRADRAIRPVTLERGVMKNATGSCLVKFGDTHVLCAATIEER--------VPGWRK 55

Query: 372 NDFM----MHYNFLPCATGEVSRMGAPSRREIGH--GRLARRAIHPVLPQTAQFPYTLRI 425
           N  +      Y  LP +T + +      R+       RL  R++  V    A     L  
Sbjct: 56  NSGLGWVTAEYAMLPASTSKRTPREYKGRKGRSQEIERLIGRSLRNVCDMGAMGGEVLMT 115

Query: 426 V-SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDF 473
           V  ++ ++DG +  A++ G+ +A  DA             P+   VA I++G+V      
Sbjct: 116 VDCDVLQADGGTRTASITGAWVAAYDAFEMWRKSGKCKRNPLFGQVAAISVGMVGG---- 171

Query: 474 IILSDISGDEDHLGHMDFKV 493
            +L D+   ED    +D  V
Sbjct: 172 RLLLDLDYREDSKAEIDMNV 191


>gi|315638685|ref|ZP_07893859.1| 30S ribosomal protein S1 [Campylobacter upsaliensis JV21]
 gi|315481309|gb|EFU71939.1| 30S ribosomal protein S1 [Campylobacter upsaliensis JV21]
          Length = 557

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I+++ + N++ +G V K+  +G FV   G  DGLVH S++S +     S + KEGD V V
Sbjct: 197 ISEILDKNELIEGLVKKITTYGMFVD-VGGIDGLVHYSEISYKGPVNPSSLYKEGDKVPV 255


>gi|146329666|ref|YP_001210043.1| transcriptional accessory protein [Dichelobacter nodosus VCS1703A]
 gi|146233136|gb|ABQ14114.1| transcriptional accessory protein [Dichelobacter nodosus VCS1703A]
          Length = 734

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKE 666
           E I+ I+D+ +   I +G V  V +FGAFV+    +DGLVHIS+LS + V     +    
Sbjct: 629 EEIQEISDL-KSGMILEGVVSNVANFGAFVNIGVHQDGLVHISELSHQFVTDPRTIVKAG 687

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
                  +     R +I L+M++ D+   K I
Sbjct: 688 DVVKVKVVSVDVARKRIALTMRLDDKPAKKSI 719


>gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833]
 gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833]
          Length = 247

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 22/202 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ +   T+   E         G+   
Sbjct: 3   RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATV---EAGNVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATG  S      G    R     RL  RA+   +        ++ I  +
Sbjct: 60  WVTAEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA           G P+   V+ +++G+V  G + ++  
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVAWMRANEVCLGDPLVNSVSAVSVGIV--GSEPLL-- 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+  +ED +   D  V  T +G
Sbjct: 176 DLCYEEDVVAETDMNVVMTGAG 197


>gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 259

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G T+ +   ++     +       G+   
Sbjct: 4   REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASV----TDGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S   +   R  G      RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVTYLAAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+  +ED    +D  V  TD+G
Sbjct: 176 VDLPYEEDARAEVDMNVVATDTG 198


>gi|325981263|ref|YP_004293665.1| ribonuclease PH [Nitrosomonas sp. AL212]
 gi|325530782|gb|ADZ25503.1| ribonuclease PH [Nitrosomonas sp. AL212]
          Length = 240

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 23/172 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R ++      +   GS L   GDT+ I   ++     EQ    L G  +
Sbjct: 2   IRSHQRTPAQIRPVNIIRHYTKHADGSVLIECGDTKVICTASI----SEQVPPFLRGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   +RM      G  S R +   RL  RA+   +        T+++
Sbjct: 58  GWLTAEYGMLPGSTN--TRMQREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQL 115

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGL 466
             ++ ++DG +  A++ G+ +AL DA             PI+  VA I++G+
Sbjct: 116 DCDVIQADGGTRTASITGAFVALHDAIEKLIYQQLIETSPITDHVAAISVGI 167


>gi|256810935|ref|YP_003128304.1| KH domain protein [Methanocaldococcus fervens AG86]
 gi|256794135|gb|ACV24804.1| KH domain protein [Methanocaldococcus fervens AG86]
          Length = 216

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE----IEAARE 608
           +EI+ IP +++  +IG  G V + I ++ G K+ ID+DGTV I  +   +    +  A++
Sbjct: 12  IEILKIPRERVGVLIGKKGSVKKAIEKELGVKLEIDEDGTVTIYGTEKQKDPLAVWKAKD 71

Query: 609 MIRSI 613
           ++R+I
Sbjct: 72  IVRAI 76


>gi|57242230|ref|ZP_00370169.1| ribosomal protein S1, putative [Campylobacter upsaliensis RM3195]
 gi|57016910|gb|EAL53692.1| ribosomal protein S1, putative [Campylobacter upsaliensis RM3195]
          Length = 557

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           I+++ + N++ +G V K+  +G FV   G  DGLVH S++S +     S + KEGD V V
Sbjct: 197 ISEILDKNELIEGLVKKITTYGIFVD-VGGIDGLVHYSEISYKGPVNPSSLYKEGDKVPV 255


>gi|57239341|ref|YP_180477.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
 gi|57161420|emb|CAH58344.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
          Length = 565

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           I +G+V  +  +G F+        G  DGL+HI+ +S  RV   S V   G TV  K++ 
Sbjct: 232 IIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVNHPSAVFSCGQTVRTKIIK 291

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K ++++
Sbjct: 292 IDRENKKISLGVKQLEES 309



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  + ++G FV      +GLVH+S++S T+     + +   G+ + VK+L  
Sbjct: 320 VDSVHKGIVTSIEEYGIFVELEVGIEGLVHVSEVSWTKSSLPINQLFMRGEEIQVKVLSI 379

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ LSMK    N
Sbjct: 380 DTAKSRMSLSMKRCQDN 396


>gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301]
 gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942]
 gi|61215786|sp|Q5N4V3|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123557014|sp|Q31PB6|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942]
          Length = 238

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 21/201 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+ Q    Q   GS L   G TQ +  VT+           L+G  +
Sbjct: 4   IRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTI----QAGVPRWLTGQGQ 59

Query: 372 NDFMMHYNFLPCATGE-VSRMGAP-SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT +  SR     S R     RL  R++   +        TL I +++
Sbjct: 60  GWLTAEYRMLPGATPDRQSREWLKLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADV 119

Query: 430 TESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSD 478
            ++D  +    + GS +AL DA             PI + +A +++ L+  G+ F+   D
Sbjct: 120 LQADAGTRTTAINGSWVALQDAIAQLIAQGELTESPIQRSIAAVSVALI-GGEAFL---D 175

Query: 479 ISGDEDHLGHMDFKVAGTDSG 499
               ED    +D  V   D G
Sbjct: 176 PDYPEDVQADVDCNVVMGDRG 196


>gi|315427084|dbj|BAJ48700.1| translation initiation factor eIF-2 alpha subunit [Candidatus
           Caldiarchaeum subterraneum]
 gi|315427116|dbj|BAJ48731.1| translation initiation factor eIF-2 alpha subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 254

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ VPEV ++  G+V +V D+GA+V        +G VH+S++S + V    + +KEG   
Sbjct: 1   MSKVPEVGELVIGRVREVKDYGAYVEIDEYPGYEGFVHVSEVSLKWVRNIREHLKEGQRT 60

Query: 671 WVKLL 675
             K++
Sbjct: 61  VFKII 65


>gi|302308948|ref|NP_986113.2| AFR566Cp [Ashbya gossypii ATCC 10895]
 gi|299790870|gb|AAS53937.2| AFR566Cp [Ashbya gossypii ATCC 10895]
          Length = 1715

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 581  TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            TG  VN + D  + + +   +E+    ++++S  D+ +   I+ G V  V DFG FV   
Sbjct: 1211 TGKVVNCESDSRI-LLTMKESEVNGELKILKSYADL-KSGDIFDGSVKNVTDFGVFVKLH 1268

Query: 641  GARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
               +  GL H S++S  ++   S +  EGD V   +L  + ++ ++ L +K
Sbjct: 1269 NTLNVTGLAHKSEISDSKIDDLSLLFGEGDKVKAIILKTNPEKNQVSLGLK 1319


>gi|291320136|ref|YP_003515394.1| ribonuclease R [Mycoplasma agalactiae]
 gi|290752465|emb|CBH40437.1| Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II)
           [Mycoplasma agalactiae]
          Length = 729

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVP-------EVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           KIA+ + A  E A ++ R + D+         +N  ++GQV  +  FG F+ F    D +
Sbjct: 591 KIAAMNSASEENAVQLERDVNDLKFAEYFKSRINSEFEGQVFGITKFGMFIQFDNKTDAM 650

Query: 647 VHISQL 652
           VHIS +
Sbjct: 651 VHISNI 656


>gi|226291917|gb|EEH47345.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb18]
          Length = 1780

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V  V +FGAF+   G  +  GL H ++++ ++V     + ++GD V  K+L  D
Sbjct: 1291 QIVTGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKID 1350

Query: 679  -DRGKIKLSMKV 689
             D+ +I L +K 
Sbjct: 1351 HDKERISLGLKA 1362


>gi|114766578|ref|ZP_01445534.1| 30S ribosomal protein S1 [Pelagibaca bermudensis HTCC2601]
 gi|114541194|gb|EAU44246.1| 30S ribosomal protein S1 [Roseovarius sp. HTCC2601]
          Length = 553

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++KG+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 278 VHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEIDPA 337

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 338 KRRVSLGLKQTMRN 351



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG F+   G  DG+VH+S LS  +R  +     ++GD V   + 
Sbjct: 361 PEGTQV-EGEVKNITEFGLFIGLDGEIDGMVHLSDLSWDQRGEEAIQEYRKGDVVQAVVT 419

Query: 676 DFD-DRGKIKLSMKVV 690
           + D D+ +I LS+K +
Sbjct: 420 EVDTDKERISLSIKAL 435


>gi|83950767|ref|ZP_00959500.1| ribonuclease PH [Roseovarius nubinhibens ISM]
 gi|83838666|gb|EAP77962.1| ribonuclease PH [Roseovarius nubinhibens ISM]
          Length = 238

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 31/176 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G+ +   GS +   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRALDEMRPVSIETGVTKHAEGSCMIRVGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----------RLARRAIHPVLPQTAQFPY 421
                 Y  LP +T   SRM    RRE   G          RL  R++   + + A    
Sbjct: 57  GWVTAEYGMLPRST--TSRM----RREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGER 110

Query: 422 TLRIVSEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGL 466
            + +  ++ ++DG +  A++ G  +A       LM AG     P+  PV  ++ G+
Sbjct: 111 QITVDCDVIQADGGTRCASITGGWVALKLAVQKLMKAGDVTSDPLVDPVGAVSCGI 166


>gi|330717901|ref|ZP_08312501.1| RNA-binding protein [Leuconostoc fallax KCTC 3537]
          Length = 125

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  +G+V  +  +GAFV     + GL+HIS+  +  V   ++ +  G  V V +LD 
Sbjct: 4   KIGQKLRGKVTGIQPYGAFVMLNNHQQGLIHISECKSGVVKNLANELAVGKEVDVVVLDI 63

Query: 678 DD-RGKIKLSMK 688
           +   GKI LS++
Sbjct: 64  EQYNGKISLSLR 75


>gi|330833236|ref|YP_004402061.1| RNA binding S1 domain-containing protein [Streptococcus suis ST3]
 gi|329307459|gb|AEB81875.1| RNA binding S1 domain protein [Streptococcus suis ST3]
          Length = 713

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 12/75 (16%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---------SDVVKEGD--TVWV 672
           +G V  ++DFGAFV      DGLVHIS++   +  K          S+V+  G+  TVWV
Sbjct: 633 QGTVRNIVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQVLPHPSEVLAVGEIVTVWV 692

Query: 673 KLLDFDDRGKIKLSM 687
             +D   R +I LS+
Sbjct: 693 VEVDI-KRNRIGLSL 706


>gi|315641440|ref|ZP_07896512.1| general stress protein 13 [Enterococcus italicus DSM 15952]
 gi|315482728|gb|EFU73252.1| general stress protein 13 [Enterococcus italicus DSM 15952]
          Length = 128

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ +G +  +  +GAFV       GL+H+S++ +       +++K G  V V+++D 
Sbjct: 10  KIGQVIEGTITGIQPYGAFVSLDANTQGLIHVSEIQSGYTKNIHELLKVGQKVTVQVIDI 69

Query: 678 DD-RGKIKLSMKVVDQNTGKPI 698
           D    KI LS + +  +T  PI
Sbjct: 70  DAFSKKISLSRRTL-THTYTPI 90


>gi|82702712|ref|YP_412278.1| RNA binding S1 [Nitrosospira multiformis ATCC 25196]
 gi|82410777|gb|ABB74886.1| RNA binding S1 [Nitrosospira multiformis ATCC 25196]
          Length = 790

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +E +  I+D+ +   + +G V  V  FGAFV     +DGLVHIS L+ + V     VV
Sbjct: 655 AFKEGVNEISDL-QPGMLLEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHTVV 713

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           K G  V VK+L+ D+ R +I L+M++ D
Sbjct: 714 KVGQVVKVKVLEVDEKRKRIALTMRLAD 741


>gi|168702929|ref|ZP_02735206.1| RNase PH [Gemmata obscuriglobus UQM 2246]
          Length = 243

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R + R    +R++S   G  +   GS L   G T  +    +    + +  D L G  + 
Sbjct: 3   RPNDRSPTALRELSFTRGYTRPAPGSVLVKMGRTTVLCTCCV----EPKVPDFLVGKGKG 58

Query: 373 DFMMHYNFLPCAT---GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                Y  LP +T       + G    R +   RL  R++  V+        TL I  ++
Sbjct: 59  WLTAEYGMLPGSTHTRKPRDKAGKVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCDV 118

Query: 430 TESDGSSSMATVCGSSLALMDA--------GVPISK----PVAGIAMGLVKDGDDFIILS 477
            E+DG +  A++ G+ +A +DA         VP+++     VA +++GL+ +G++ +   
Sbjct: 119 LEADGGTRTASITGAFVAAVDAINSIKSLLTVPVTEVLTDSVAAVSVGLI-EGEERL--- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED    +D  +  T SG
Sbjct: 175 DLEYVEDRDADVDMNLVMTGSG 196


>gi|53802880|ref|YP_115411.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
 gi|61215834|sp|Q602N9|RNPH_METCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|53756641|gb|AAU90932.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
          Length = 243

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+      +   GS L   GDT+ I   ++    +E+    L G   
Sbjct: 1   MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASV----EERVPPFLKGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +   A   ++ G      RL  R++   L   A    T+ +  
Sbjct: 57  GWITAEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL+ A             P+   +A +++G+ +     + +
Sbjct: 117 DVIQADGGTRTASITGGYVALVLAVQRLLKSRKIKTNPVHGQIASVSVGICQG----VPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V   D+G
Sbjct: 173 LDLDYAEDCDAETDMNVVMNDAG 195


>gi|307150169|ref|YP_003885553.1| Tex-like protein protein-like protein [Cyanothece sp. PCC 7822]
 gi|306980397|gb|ADN12278.1| Tex-like protein protein-like protein [Cyanothece sp. PCC 7822]
          Length = 718

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I  I+D+ E  ++ +G V  V++FGAFV     +DGLVHISQL+   V+  + VVK 
Sbjct: 634 KEGIMEISDLKEGMEL-EGIVTNVVNFGAFVDVGVHQDGLVHISQLADHFVSDPNQVVKV 692

Query: 667 GDTVWVKLLDFDDRGK-IKLSMK 688
           G  V V++++ +++ K I LSMK
Sbjct: 693 GQVVKVRVMEVNEKLKRIGLSMK 715


>gi|225435349|ref|XP_002285257.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
 gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
          Length = 254

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR     R    + G +    GS+    G+T+ IV V  G RE ++ + + SGT R
Sbjct: 31  VRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSV-FGPRESKKAM-AYSGTGR 88

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLRIVSEIT 430
            +  + Y      T  +   G  S  + G+  +  +A+   +     FP  T+ + + + 
Sbjct: 89  LNCNVSYT-----TFAMPIRGQGSDHK-GYSSMLHKALEGAI-IVESFPKTTVDVFALVL 141

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           ES GS     +  +SLAL DAG+ +   VA +++  +  G + +I
Sbjct: 142 ESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCL--GKNLVI 184


>gi|146319266|ref|YP_001198978.1| transcriptional accessory protein [Streptococcus suis 05ZYH33]
 gi|146321470|ref|YP_001201181.1| transcriptional accessory protein [Streptococcus suis 98HAH33]
 gi|145690072|gb|ABP90578.1| Transcriptional accessory protein [Streptococcus suis 05ZYH33]
 gi|145692276|gb|ABP92781.1| Transcriptional accessory protein [Streptococcus suis 98HAH33]
 gi|292558899|gb|ADE31900.1| RNA binding S1 [Streptococcus suis GZ1]
 gi|319758700|gb|ADV70642.1| transcriptional accessory protein [Streptococcus suis JS14]
          Length = 332

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 12/75 (16%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---------SDVVKEGD--TVWV 672
           +G V  ++DFGAFV      DGLVHIS++   +  K          S+V+  G+  TVWV
Sbjct: 252 QGTVRNIVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQALPHPSEVLAVGEIVTVWV 311

Query: 673 KLLDFDDRGKIKLSM 687
             +D   R +I LS+
Sbjct: 312 VEVDI-KRNRIGLSL 325


>gi|58579307|ref|YP_197519.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58617361|ref|YP_196560.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel]
 gi|58416973|emb|CAI28086.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel]
 gi|58417933|emb|CAI27137.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
          Length = 567

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           I +G+V  +  +G F+        G  DGL+HI+ +S  RV   S V   G TV  K++ 
Sbjct: 234 IIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVNHPSAVFSCGQTVRTKIIK 293

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +  KI L +K ++++
Sbjct: 294 IDRENKKISLGVKQLEES 311



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  + ++G FV      +GLVH+S++S T+     + +   G+ + VK+L  
Sbjct: 322 VDSVHKGIVTSIEEYGIFVELEVGIEGLVHVSEVSWTKSSLPINQLFMRGEEIQVKVLSI 381

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  + ++ LSMK    N
Sbjct: 382 DTAKSRMSLSMKRCQDN 398


>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
           Go1]
 gi|29336794|sp|Q8PTT7|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
 gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 266

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 30/180 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS--LKDGQDFFPLTVNYQERTYAVG 71
           R LKLET  I++ ++G+   T G T VL  V         D QD   +  N +    A  
Sbjct: 35  RELKLETNVISK-AEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASP 93

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-----LFSKCYK-NETQVIINVMQHDLESS 125
           +   G       P E+ I ++R++DR IR      +   C    E+  I+ +  H L + 
Sbjct: 94  EFEPG------PPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHILNND 147

Query: 126 PHVV--SMVAASAALMLSGLPFEG-------PV------VGAQVDYINGQYVLNPRLDED 170
            +++  S +AA AALM + +P E        P+      VG  +  I  + +++P LDE+
Sbjct: 148 GNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKLMVDPSLDEE 207


>gi|329765623|ref|ZP_08257198.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137893|gb|EGG42154.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 160

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
             ++T  P++ +I +G++V + DFGAFV   G  D L+H+SQ+
Sbjct: 36  FEALTFYPKLQEIVQGEIVDITDFGAFVRI-GPTDALLHLSQV 77


>gi|311106536|ref|YP_003979389.1| ribonuclease PH [Achromobacter xylosoxidans A8]
 gi|310761225|gb|ADP16674.1| ribonuclease PH [Achromobacter xylosoxidans A8]
          Length = 244

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 21/173 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  + +R  S + G  +   GS L   G+T  +   ++     E+    L G   
Sbjct: 8   ARPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASV----LEKVPPFLKGKGE 63

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G  S R     RL  R++  V    A    TL + 
Sbjct: 64  GWVTAEYGMLPRATHTRGDREAAR-GKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLD 122

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVK 468
            ++ ++DG +  A++ G+ +A       LM  G     PI   VA +++GLV+
Sbjct: 123 CDVLQADGGTRCASITGAWVAASEAIALLMKRGDLAVNPIRDAVAAVSVGLVQ 175


>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
 gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
          Length = 261

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 33/233 (14%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V   ++   +  +ML K  R DGR    +RDI+ + G++ +  GS++   GDTQ +V V 
Sbjct: 6   VISRLKRDYIYNLML-KGEREDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVK 64

Query: 354 L--GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--- 408
           +  GT     + DS +       +      P A+ +    G P  + I  GR+  R    
Sbjct: 65  MQVGT----PFPDSPA---EGVIITSMELNPIASPDF-EAGPPREKAIEMGRIVDRGIRE 116

Query: 409 -----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK------ 457
                I+ +     +  + + I   +  + G+   A   G+  ALM   VP  +      
Sbjct: 117 SGAIDINKLCITEGEEVWMVFIDVHVLNNSGNILDAASLGAIAALMTTTVPSEREGKGED 176

Query: 458 ---PVAGIAMG--LVKDGDDFIILSDISGDEDHLGHMDFKVAGT-DSGITAMQ 504
              PV  + +G  LVK GD+ ++  D +  E+ +      ++   D  I +MQ
Sbjct: 177 YPMPVREMPVGVSLVKIGDEMVL--DPTYGEESVCETRITISSNQDGSICSMQ 227


>gi|301097567|ref|XP_002897878.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
 gi|262106626|gb|EEY64678.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
          Length = 1882

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 624  KGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFDDR 680
            KG + KV  +G FV        GL HIS+++ E+V +  D +  EGD V  K+L  +DR
Sbjct: 1443 KGTITKVQTYGVFVRIEKTTISGLCHISEVADEKVTQPLDQIFSEGDYVKAKVLKVEDR 1501


>gi|298490918|ref|YP_003721095.1| Tex-like protein protein-like protein ['Nostoc azollae' 0708]
 gi|298232836|gb|ADI63972.1| Tex-like protein protein-like protein ['Nostoc azollae' 0708]
          Length = 719

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I+ I D+  V    +G +  V +FGAFV     +DGLVHISQL+   V     +VK G  
Sbjct: 637 IKEIRDL-RVGMKLEGIITNVANFGAFVDIGVHQDGLVHISQLADRFVDDPQKIVKVGQV 695

Query: 670 VWVKLLDFDDR-GKIKLSMKVVDQ 692
           V V++L+ +++  +I LS+K V Q
Sbjct: 696 VKVQVLEVNEKLNRIGLSIKAVKQ 719


>gi|84490305|ref|YP_448537.1| translation initiation factor IF-2 subunit alpha [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731076|sp|Q2NE59|IF2A_METST RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|84373624|gb|ABC57894.1| putative translation initiation factor 2, alpha subunit
           (aIF-2-alpha) (eIF2A) [Methanosphaera stadtmanae DSM
           3091]
          Length = 260

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + PE   +  G V KV+ +GAF        ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRMSKEWPEEGDLIVGTVHKVLGYGAFAKLEEYEGKEAFIHISEVSSGWVKNIRDYVRE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV--DQNT 694
              +  ++L  +  +G +  S+K +  DQ T
Sbjct: 61  NQKIVARVLRVNPKKGHVDASLKRIREDQRT 91


>gi|123455454|ref|XP_001315471.1| helicase [Trichomonas vaginalis G3]
 gi|121898149|gb|EAY03248.1| helicase, putative [Trichomonas vaginalis G3]
          Length = 1006

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLSTERVAK--TSDVVKEGDTVW 671
           PEV  IYKG+V  V +  AFV   G      G++ ++++S +  ++   +D+V  G  ++
Sbjct: 97  PEVGVIYKGRVTSVTNQCAFVKIEGFHSKPVGMLPVTEMSNDPGSRLLATDIVGVGQHLF 156

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTG 695
           VK++       + LS+K +DQ TG
Sbjct: 157 VKVIK-SMTASLTLSIKGIDQTTG 179


>gi|118576156|ref|YP_875899.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
 gi|118194677|gb|ABK77595.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
          Length = 244

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           ++T  P++ +I +G++V + DFGAFV   G  D L+H+SQ+
Sbjct: 102 ALTFYPKLQEIIQGEIVDITDFGAFVRI-GPTDALLHLSQV 141


>gi|307294011|ref|ZP_07573855.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
 gi|306880162|gb|EFN11379.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
          Length = 238

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 19/172 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R+I+ + G      GS L   GDT+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDQMREITMEPGFTIHAEGSCLISFGDTRVLCTASI----EEKVPPFLRGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       A   ++ G      RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVK 468
           ++ ++DG +  A + GS +A       L+ +G     PI + VA I+ G+ K
Sbjct: 117 DVIQADGGTRTAAISGSWVALRIAVDKLLASGALKEDPIVQKVAAISCGIYK 168


>gi|292490867|ref|YP_003526306.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
 gi|291579462|gb|ADE13919.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
          Length = 239

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I       +   GS L   GDT+ I   ++    +++    L G  +
Sbjct: 1   MRPSGRAPDELRPIRLTRHYTKYAEGSVLVEFGDTRVICTASV----EDRVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    G  +  G    R +   RL  R++  ++  +A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTNIRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D           A  PI   VA +++G+  +G   + L
Sbjct: 117 DVIQADGGTRTASITGAYVALVDAVGSLLKKRVIAHSPIHGQVASVSVGIC-EGRPVLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
             I   ED     D  V   ++ G   +Q   +      N +   L+ AK G   +L + 
Sbjct: 176 DYI---EDSTAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLELAKSGIGTLLAKQ 232

Query: 536 SKVLSES 542
           ++ L+++
Sbjct: 233 TEALAKN 239


>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
 gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 261

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG--- 368
           +R+DGR    +R ++AQ+     + GSS    G+TQ +  VT     D   + S+ G   
Sbjct: 13  LRLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVT--GPCDPSKLRSIGGGGN 70

Query: 369 ---TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
               ++ +  +  +F   A  +  + G   +R             P L  T     T+ +
Sbjct: 71  SNAGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSNSTILL 130

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
              I   DGS   A +  S+LAL+DAG+P+   +     G
Sbjct: 131 SLHILSLDGSLLSALINASTLALIDAGIPMPSYICACTAG 170


>gi|83952621|ref|ZP_00961351.1| 30S ribosomal protein S1 [Roseovarius nubinhibens ISM]
 gi|83835756|gb|EAP75055.1| 30S ribosomal protein S1 [Roseovarius nubinhibens ISM]
          Length = 554

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ 
Sbjct: 275 LSSVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEI 334

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ L +K   +N
Sbjct: 335 DAAKRRVSLGLKQTQRN 351



 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG FV   G  DG+VH+S LS  ER        ++GD V   + 
Sbjct: 361 PEGTEV-EGEVKNITEFGLFVGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVHAVVS 419

Query: 676 DFD-DRGKIKLSMKVV 690
           + D ++ +I LS+K V
Sbjct: 420 EVDVEKERISLSIKAV 435


>gi|289622237|emb|CBI51415.1| unnamed protein product [Sordaria macrospora]
          Length = 273

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 14/164 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT----LGTREDEQYVDSLS 367
           +R+DGR    +R I AQ+       GSS    G T+ + VV      G R          
Sbjct: 13  LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG--HGRLARRAIHPVLP---QTAQFPY- 421
           G Q  +  +  N +      V R     RR  G  H    +  I   L     T  FP+ 
Sbjct: 73  GGQSKNAEVAVNIVIAGFSSVDR----KRRGRGDKHILELQSTISQALAASLHTHLFPHS 128

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           T+ I   +   DGS   A +  ++LA +DAG+P++  VA    G
Sbjct: 129 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAG 172


>gi|50365157|ref|YP_053582.1| fused polyribonucleotide nucleotidyltransferase/ribosomal protein
           S1 domain-containing protein [Mesoplasma florum L1]
 gi|50363713|gb|AAT75698.1| polyribonucleotide nucleotidyltransferase/predicted RNA-binding
           protein containing ribosomal protein S1 domain
           [Mesoplasma florum L1]
          Length = 78

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           +NK+   ++  +  FGAF  F        GL+HIS+++   V   +D VK G  V V +L
Sbjct: 1   MNKVISVKISDIAPFGAFAIFELDGKEYKGLIHISEIANTFVNDINDFVKVGQDVEVLIL 60

Query: 676 DF-DDRGKIKLSMKVVD 691
           +  D++ + KLS+K V+
Sbjct: 61  ELNDEKAQAKLSIKKVN 77


>gi|257426201|ref|ZP_05602616.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257270906|gb|EEV03079.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
          Length = 676

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS
Sbjct: 636 SIEDLKEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLS 676


>gi|225680123|gb|EEH18407.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03]
          Length = 1175

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +I  G+V  V +FGAF+   G  +  GL H ++++ ++V     + ++GD V  K+L  D
Sbjct: 732 QIVTGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKID 791

Query: 679 -DRGKIKLSMKV 689
            D+ +I L +K 
Sbjct: 792 HDKERISLGLKA 803


>gi|86133351|ref|ZP_01051933.1| Transcriptional accessory protein [Polaribacter sp. MED152]
 gi|85820214|gb|EAQ41361.1| Transcriptional accessory protein [Polaribacter sp. MED152]
          Length = 707

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I++I D+  + ++  G V  + +FG FV       GL+H+S LS   V   + +V     
Sbjct: 628 IKTIADL-RIGQLLPGIVNNITNFGCFVDIGIKESGLIHVSNLSDSYVKDVNTIVALRQQ 686

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           + VK+L+ D  R +I+L++
Sbjct: 687 IVVKVLEVDVHRKRIQLAL 705


>gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328]
 gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328]
          Length = 242

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 22/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +  ++   Q    S L   G+TQ +  VT+           L  T + 
Sbjct: 6   RPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTI----QPGVPRFLQDTGKG 61

Query: 373 DFMMHYNFLPCATGEVS--RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +     +   S R     RL  R++   +   A    T+ + +++ 
Sbjct: 62  WLTAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVL 121

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A             PI   +A I++G++  G+  +   D+
Sbjct: 122 QADAGTRTTSITGGFVALAHAFNKMVKQGQLKRSPIIHQIAAISVGMMH-GEPLL---DL 177

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D  GI  +Q   +   ++ N +   L  A++G   +     +V
Sbjct: 178 NYQEDVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 237

Query: 539 L 539
           L
Sbjct: 238 L 238


>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
 gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
          Length = 250

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++  R    + G ++   GS+    GDT+ IV V  G RE ++  ++ S   R 
Sbjct: 27  RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSV-FGPRESKK-AEAFSDAGRL 84

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA-------QFP-YTLR 424
           +  + Y    C+         P R ++G      R +  +L ++         FP  T+ 
Sbjct: 85  NCNVKY----CS------FATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVD 134

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + + + +S G      V  +SLAL DAG+ +   VA ++   ++
Sbjct: 135 VFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVSASSIQ 178


>gi|284161935|ref|YP_003400558.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM
           5631]
 gi|284011932|gb|ADB57885.1| phosphoesterase RecJ domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 691

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            I DV  +N++Y G+V  + D GAFV+      GL+H   L           +KE DTV 
Sbjct: 109 GIEDV-RLNRVYVGKVSAITDIGAFVNLNKRLRGLIHKRNLGNVD-------LKEDDTVL 160

Query: 672 VKLLDFDDRGKIKLSMKVVDQ 692
           VK+ +    G+I L ++ +D 
Sbjct: 161 VKVTNIRPTGEIDLVLERMDN 181


>gi|317127085|ref|YP_004093367.1| Tex-like protein protein-like protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472033|gb|ADU28636.1| Tex-like protein protein-like protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 728

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +G V  V+DFGAFV     +DGLVHIS+L+ + V
Sbjct: 655 QGTVRNVVDFGAFVDIGVKQDGLVHISKLANKYV 688


>gi|319943444|ref|ZP_08017726.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743259|gb|EFV95664.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 253

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 28/207 (13%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS----LSG 368
           R DGR  + +R +  Q    +   GS L   GDT+ +   ++        +DS    L G
Sbjct: 9   RHDGRALDGLRPVRFQRRFTRHAEGSVLVSFGDTRVLCTASV--------LDSVPPFLRG 60

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLR 424
             +      Y  LP AT   S   A   ++ G      RL  R++  V         T+ 
Sbjct: 61  KGQGWVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIH 120

Query: 425 IVSEITESDGSSSMATVCGSSLALMDA--GV---------PISKPVAGIAMGLVK-DGDD 472
           +  ++ ++DG +  A + G+ +AL DA  G+         P+ + VA I++G+V   G  
Sbjct: 121 LDCDVLQADGGTRTAAITGAWVALRDAVNGLLAAGKLTSDPLREAVAAISVGIVALPGAA 180

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
              + D+   ED     D  V  T SG
Sbjct: 181 PACVLDLDYQEDSGCETDMNVVMTASG 207


>gi|183982595|ref|YP_001850886.1| transcriptional accessory protein Tex [Mycobacterium marinum M]
 gi|183175921|gb|ACC41031.1| transcriptional accessory protein Tex [Mycobacterium marinum M]
          Length = 787

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLD 676
           +V  + +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G       +  
Sbjct: 653 KVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMAERFVSDPHEVVRSGQVVRVKVVDV 712

Query: 677 FDDRGKIKLSMKVVDQ 692
             +R +I LS+++ D+
Sbjct: 713 DVERQRIGLSLRLNDE 728


>gi|194477334|ref|YP_002049513.1| 30S ribosomal protein S1-like B, putative [Paulinella
           chromatophora]
 gi|171192341|gb|ACB43303.1| 30S ribosomal protein S1-like B, putative [Paulinella
           chromatophora]
          Length = 368

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ +GQV  V  +G FV   G+ +GL+H S ++   + + + + K+G+ +   + D 
Sbjct: 259 QIGQLIEGQVTVVKPYGFFVDI-GSINGLLHYSCITNGNLREPNKIFKQGERIKALITDL 317

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  RG+I L+  +++   GKP
Sbjct: 318 DPTRGRIGLNTALLE---GKP 335


>gi|83313597|ref|YP_423861.1| ribonuclease PH [Magnetospirillum magneticum AMB-1]
 gi|82948438|dbj|BAE53302.1| RNase PH [Magnetospirillum magneticum AMB-1]
          Length = 241

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 26/210 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +  + G+ +   GS +   GDT  +   ++    +E+    L  T +
Sbjct: 3   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASV----EEKVPPFLRNTGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++  V    A     ++I  
Sbjct: 59  GWVTAEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A            +P++  VA I+ G+ +     + +
Sbjct: 119 DVLQADGGTRTASITGAFVALHLAFQRLVRLELLKAIPLTDHVAAISCGIYEG----VAV 174

Query: 477 SDISGDEDHLGHMD--FKVAGTDSGITAMQ 504
            D+   ED     D  F + GT  GI  +Q
Sbjct: 175 LDLDYPEDSNAQADANFVMTGT-GGIVEIQ 203


>gi|323343209|ref|ZP_08083440.1| glucose-6-phosphate isomerase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463273|gb|EFY08468.1| glucose-6-phosphate isomerase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 543

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           +I +G +  +  +GAFV       GL+HIS++S + V      V +G+ +  K++D  + 
Sbjct: 9   QIVEGTITGIQPYGAFVSIDENTTGLIHISEISDDFVRDIRQFVSQGERIIAKIIDVSEG 68

Query: 680 RGKIKLSMKVVDQNTGK 696
             +++LS+K ++ ++ K
Sbjct: 69  PHQLRLSLKALNYSSRK 85


>gi|154151491|ref|YP_001405109.1| translation initiation factor IF-2 subunit alpha [Candidatus
           Methanoregula boonei 6A8]
 gi|154000043|gb|ABS56466.1| translation initiation factor 2, alpha subunit [Methanoregula
           boonei 6A8]
          Length = 263

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 627 VVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           V  V DF AFV       R GL+ IS+++T  +    D ++EG  +  K+L+ D  RG I
Sbjct: 17  VENVKDFVAFVSLDEYNGRQGLIPISEIATGWIKYIRDHIREGQKIVCKVLNVDRTRGHI 76

Query: 684 KLSMKVVDQN 693
            LS+K V+ +
Sbjct: 77  DLSLKDVNDH 86


>gi|323435993|ref|ZP_01049562.2| Transcriptional accessory protein [Dokdonia donghaensis MED134]
 gi|321496308|gb|EAQ39534.2| Transcriptional accessory protein [Dokdonia donghaensis MED134]
          Length = 707

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A++    + IR+I DV +  ++  G V  V  FGAFV       GL+HIS L+   V+  
Sbjct: 619 AKVFTFNQNIRTIEDV-QSGQLLPGIVNNVTAFGAFVDIGIKESGLIHISNLADGFVSDV 677

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S  V     V VK+L+ D  R +I+L ++
Sbjct: 678 SAHVSLQQQVIVKVLEVDIARKRIQLKLE 706


>gi|241950924|ref|XP_002418184.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
 gi|223641523|emb|CAX43484.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
          Length = 1715

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN   +G + + +   +E+    +++++  D+ ++  I++G V    +FG FV   G
Sbjct: 1203 GKIVNCKQEGRI-LMTLKESEVNGDLKIMKTFDDL-QIGDIFEGTVTSTTEFGVFVKLDG 1260

Query: 642  ARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
              +  GL H S++S   V     +   GD V VK+L  D  + ++ L MK
Sbjct: 1261 TVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDPVKRQLSLGMK 1310


>gi|239994379|ref|ZP_04714903.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ +   T+    +E     + G  +
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATV----EEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT    G  +  G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA       G+    P+   +A +++G+ +       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTYMRAKGIIKTNPLKHMIAALSVGIYEG----TPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED     D  +  T++G
Sbjct: 173 ADLEYTEDSEAETDMNIVMTETG 195


>gi|21232680|ref|NP_638597.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767292|ref|YP_242054.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|188990329|ref|YP_001902339.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. B100]
 gi|24638173|sp|Q8P5T5|RNPH_XANCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81306727|sp|Q4UY39|RNPH_XANC8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736950|sp|B0RP96|RNPH_XANCB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21114489|gb|AAM42521.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66572624|gb|AAY48034.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|167732089|emb|CAP50281.1| ribonuclease PH [Xanthomonas campestris pv. campestris]
          Length = 241

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4]
 gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7]
 gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3]
 gi|123131815|sp|Q0HZV0|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123324577|sp|Q0HE49|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228320|sp|A0L1S6|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4]
 gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7]
 gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3]
          Length = 237

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASF----TEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G  S R     RL  RA+   +   A    T+ I
Sbjct: 57  GWVTAEYGMLPRSTH--SRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------GVPISKP----VAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+DA       G+  S P    +A +++G + +G+   
Sbjct: 115 DCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVG-IYNGE--- 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            +SD+   ED     D  V  T++G
Sbjct: 171 AISDLEYVEDSAAETDMNVVMTETG 195


>gi|239945621|ref|ZP_04697558.1| putative transcription accessory protein [Streptomyces roseosporus
           NRRL 15998]
          Length = 701

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  + D+ E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK
Sbjct: 641 KEGVEKLGDL-EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVK 698


>gi|74316495|ref|YP_314235.1| RNAse PH [Thiobacillus denitrificans ATCC 25259]
 gi|74055990|gb|AAZ96430.1| ribonuclease PH [Thiobacillus denitrificans ATCC 25259]
          Length = 244

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 97/255 (38%), Gaps = 32/255 (12%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR  + +R +       +   GS L   GDTQ +   ++        VD +
Sbjct: 1   MSELTARPSGRAPDALRALRFTRRFTKHAEGSVLVAMGDTQVLCTASV--------VDKV 52

Query: 367 ----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQ 418
                G+        Y  LP +T   S   A   ++ G      RL  R++  V+     
Sbjct: 53  PPHKKGSGEGWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKL 112

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLV 467
              TL I  ++ ++DG +  A++CG+ +A+ DA             P+   VA +++G V
Sbjct: 113 GERTLHIDCDVLQADGGTRCASICGAYVAVADAVSWLVREGALVETPLVDSVAAVSVG-V 171

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKR 526
             G   +   D+   ED     D  V  T S GI  +Q   +    S   +   L  A  
Sbjct: 172 YQGQPVL---DLDYLEDSACDTDMNVVMTGSGGIVEVQGTAEGVAFSRTTLEALLDLATA 228

Query: 527 GRLHILNEMSKVLSE 541
           G   I  E  + L +
Sbjct: 229 GIAQISAEQVRTLGQ 243


>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
 gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
           NRRL3357]
 gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae]
 gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
           NRRL3357]
          Length = 269

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 6/160 (3%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQYVDSLS 367
           K+R+DGR    +R + AQ+     + GSS    G+T  +  V     G R D       +
Sbjct: 13  KLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDA--TGGAA 70

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIV 426
           G+      +  N    A  +  R    S ++        RA       T  +P+ T+ I 
Sbjct: 71  GSSGAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  +DGS   A +   +LAL+DAG+P+   + G   G+
Sbjct: 131 VSVLSADGSLLAAAINACTLALVDAGIPMPGLLCGCTAGM 170


>gi|24375740|ref|NP_719783.1| ribonuclease PH [Shewanella oneidensis MR-1]
 gi|61216058|sp|Q8E9L4|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24350681|gb|AAN57227.1|AE015858_8 ribonuclease PH [Shewanella oneidensis MR-1]
          Length = 237

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASF----TEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G  S R     RL  RA+   +   A    T+ I
Sbjct: 57  GWVTAEYGMLPRSTH--SRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------GVPISKP----VAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+DA       G+  S P    +A +++G + +G+   
Sbjct: 115 DCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVG-IYNGE--- 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            +SD+   ED     D  V  T++G
Sbjct: 171 AISDLEYVEDSAAETDMNVVMTETG 195


>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
 gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
          Length = 237

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 23/183 (12%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M  +  R DGR   ++R + ++ G L +  GS+ F + D   ++    G  E       +
Sbjct: 1   MKTEHTRNDGRCENSIRPVESEQGSLNKADGSAKFSQ-DKSKVLAAVYGPIE-------V 52

Query: 367 SGTQRNDFMMHY---NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT- 422
           +  ++   +  Y    F P A G  + +     +E+    L + A+  ++  T  +P T 
Sbjct: 53  NSARKEKILKSYVEVTFTP-AFGNTNYI--DKEKEL----LIKNAVESMI-LTTLYPRTQ 104

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + ++ ++   DGS     +  + LAL+DAG+ ++  +  + +    DG  ++   D S +
Sbjct: 105 ISVILQVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGSIYV---DPSTE 161

Query: 483 EDH 485
           E++
Sbjct: 162 EEN 164


>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
 gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
          Length = 283

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 20/135 (14%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLR 79
            + + +DG+ L + G T V+A V  +  +  +D  D   L VN +    A   I  G   
Sbjct: 45  NVVKTADGSSLVSLGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPTASPDIEPG--- 101

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNETQVI----------INVMQHDLESSPHVV 129
               P EN I I+R++DR+IR      +K+ + V           I V+ HD   +    
Sbjct: 102 ---PPDENAIEIARVVDRAIRHSGFLDFKSLSIVTGKHAWFLWVDIYVLNHD--GNLVDA 156

Query: 130 SMVAASAALMLSGLP 144
           S +AA AALM + LP
Sbjct: 157 STIAAVAALMNTALP 171


>gi|307297899|ref|ZP_07577703.1| Tex-like protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915985|gb|EFN46368.1| Tex-like protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 717

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +G V  V+DFGAFV     +DGL+H S++   RV    +V+  G  V V++L+ D +
Sbjct: 647 EGTVRNVVDFGAFVDIGVKQDGLIHKSKMG-RRVRDPLEVLSVGQIVKVRVLEVDTK 702


>gi|299139261|ref|ZP_07032437.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
 gi|298598941|gb|EFI55103.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
          Length = 248

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 24/198 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L+L  G +A  ++G+VL   G T VL     + ++++G   +         T   G +
Sbjct: 21  RALRLTPGFVA-TAEGSVLIEVGHTRVLC----NATVENGVPGWMRNSGRGWVTAEYGML 75

Query: 74  PGGYLRRESRPTENEIL------ISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
           P   L R +R +E   +      I R+I RS+R +       E  +I+  +V+Q D  + 
Sbjct: 76  PRATLTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTIILDCDVLQADGGTR 135

Query: 126 PHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175
              ++    + AL L  L         P +  V    V  ++G+ +L+   +ED +  +D
Sbjct: 136 TAAITGACTALALALGKLVQAGSLKESPLKQMVAATSVGIVDGRVLLDLAYEEDSRAEVD 195

Query: 176 LFVSGTQDAVLMVELEAN 193
           + V  T D  L VE +A 
Sbjct: 196 MNVVMTADGGL-VETQAT 212


>gi|303281156|ref|XP_003059870.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458525|gb|EEH55822.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 583

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-------DDGTVKIASSSLAE-IEAA 606
            M +P +  + ++G GGK I+ + ++TGA VNID       D+G  K+A +  +  ++AA
Sbjct: 193 FMEVPAEVAKMIVGAGGKAIQALQDRTGALVNIDRLERGAVDNGYRKVAVTGPSRCVDAA 252

Query: 607 REMIRSITDVPEVNK 621
            + IR   +  E+N+
Sbjct: 253 ADEIRKAVNQWEMNR 267


>gi|196001809|ref|XP_002110772.1| hypothetical protein TRIADDRAFT_54022 [Trichoplax adhaerens]
 gi|190586723|gb|EDV26776.1| hypothetical protein TRIADDRAFT_54022 [Trichoplax adhaerens]
          Length = 560

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
           + +L I N++ + L+ S     E + R EI+ +P   +  +IG GG  +R +  QTGA +
Sbjct: 442 KAQLSIFNKVGEGLTPSE----ELSLRTEIL-VPSPLVGRIIGKGGSTVRQLQSQTGAMI 496

Query: 586 NID------DDGTVKIASSSLAEIEAAREMIRSI 613
            I       D  +V I  + LA  +AA+  IRSI
Sbjct: 497 EIPRGMADGDKVSVHIKGTFLAS-QAAQRRIRSI 529


>gi|205375701|ref|ZP_03228488.1| transcription accessory protein [Bacillus coahuilensis m4-4]
          Length = 723

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L    V    D   V +  TVWV  +D   +G
Sbjct: 652 QGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVTVWVDSVDV-QKG 710

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 711 RVALTM 716


>gi|87123920|ref|ZP_01079770.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
           RS9917]
 gi|86168489|gb|EAQ69746.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
           RS9917]
          Length = 432

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G VV V  +G FV   G   GL+H S ++   +    +V  +GD V   + + 
Sbjct: 323 EVGQLVEGTVVAVKPYGFFVDLGGI-SGLLHQSMITGGSMRSLREVFDQGDAVKALITEL 381

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 382 DPGRGRIALNTALLEGQPGELLI 404


>gi|281352862|gb|EFB28446.1| hypothetical protein PANDA_007977 [Ailuropoda melanoleuca]
          Length = 558

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L E TP  E +++P   +  +IG GG+ IR I + +GAK+  D +    +  S L +I  
Sbjct: 119 LTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG 178

Query: 606 ARE 608
            ++
Sbjct: 179 TQK 181


>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102 [Chlorella variabilis]
          Length = 241

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +++R+DGR  + +R + A++G+L    GS+LF  G+T+ +  V  G +  EQ   S    
Sbjct: 6   ERLRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAV-FGPKPVEQR--SQEDE 62

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRR--EIG---HGRLARRAIHPVLPQTAQFPYTLR 424
           +R      Y     +TGE  R G   RR  EIG      + +  +  +LP++      + 
Sbjct: 63  RRAIVKCEYAMASFSTGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRS-----QID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  + +A   A +P+   VA  A G ++       L D++  ED
Sbjct: 118 IYVQVLQADGGTRCACINAACMAAAAAAIPMRDLVASCAAGYLES----TALLDLNYMED 173

Query: 485 HLGHMDFKVA 494
             G  D  VA
Sbjct: 174 SGGGPDVAVA 183


>gi|227509466|ref|ZP_03939515.1| RNA binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191178|gb|EEI71245.1| RNA binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 136

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           R + R + D+  EV    KG V  +  +G FV       GL+HIS+  +  V   + +  
Sbjct: 3   RVIYRRVLDLGLEVGMKVKGVVTGIQPYGVFVDLGNQNQGLIHISECQSGYVEDINQLFS 62

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMK 688
            G+ V   ++D D+  GKI LS +
Sbjct: 63  VGEIVSSLIIDIDEYTGKISLSTR 86


>gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
          Length = 237

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R ++          GS L   G+T+ +   T+    +      + G  +
Sbjct: 1   MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATV----ESGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 Y  LP AT      E +R G    R +   RL  RA+   +   A    T+ I 
Sbjct: 57  GWINAEYGMLPRATHTRNAREAAR-GKQGGRTMEIQRLIARALRAAVDLKALGENTITID 115

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL+DA             P+   +A I++G+ K       
Sbjct: 116 CDVIQADGGTRTASISGACVALVDALTHMRAKGMINSNPLKHMIAAISVGIYKGQ----A 171

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           +SD+   ED     D  V  T++G
Sbjct: 172 ISDLEYIEDSAAETDMNVILTETG 195


>gi|269958579|ref|YP_003328366.1| 30S ribosomal protein S1 [Anaplasma centrale str. Israel]
 gi|269848408|gb|ACZ49052.1| 30S ribosomal protein S1 [Anaplasma centrale str. Israel]
          Length = 560

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           E   I +G+V  +  +G F+        G  DGL+HI+ +S  RV+  S V   G TV  
Sbjct: 223 EEGSIIEGKVKSITKYGVFIGIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRA 282

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
           K++  D +  KI L +K ++++
Sbjct: 283 KIIRIDRENRKISLGVKQLEES 304



 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDF 677
           V+ I+KG V  + D+G FV      +GL+H+S++S  R     +     G+ V  K+L  
Sbjct: 315 VDSIHKGIVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQTFMRGEEVEAKVLSL 374

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ LS+K   +N
Sbjct: 375 DAAKNRMSLSIKRCKEN 391


>gi|56417008|ref|YP_154082.1| 30S ribosomal protein S1 [Anaplasma marginale str. St. Maries]
 gi|56388240|gb|AAV86827.1| 30S ribosomal protein S1 [Anaplasma marginale str. St. Maries]
          Length = 559

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           E   I +G+V  +  +G F+        G  DGL+HI+ +S  RV+  S V   G TV  
Sbjct: 222 EEGSIIEGKVKSITKYGVFIGIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRA 281

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
           K++  D +  KI L +K ++++
Sbjct: 282 KIIRIDRENRKISLGVKQLEES 303



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDF 677
           V+ I+KG V  + D+G FV      +GL+H+S++S  R     +     G+ V  K+L  
Sbjct: 314 VDSIHKGIVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQTFMRGEEVEAKVLSL 373

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ LS+K   +N
Sbjct: 374 DAAKNRMSLSIKRCKEN 390


>gi|322704015|gb|EFY95615.1| rRNA biogenesis protein RRP5, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1795

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 591  GTVKIASSSLAEIE---AAREMIRSITDVPEVNKIYKGQVV-----KVMDFGAFVHFCGA 642
            G V    S+L ++E    A  +    T +   N I KG VV     KV +FGAF+    +
Sbjct: 1255 GRVLSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKS 1314

Query: 643  RD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             +  GL H SQ++ E V   + + KEGD V   +L+ D
Sbjct: 1315 SNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVD 1352


>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
          Length = 235

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 13/150 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E    R+ R     V+        ++ +V +I    GS     
Sbjct: 81  RP-------KIGLPGVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQIVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           +  + +AL+DAGVP+     G+   L  DG
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDG 163


>gi|291449079|ref|ZP_06588469.1| transcription accessory protein [Streptomyces roseosporus NRRL
           15998]
 gi|291352026|gb|EFE78930.1| transcription accessory protein [Streptomyces roseosporus NRRL
           15998]
          Length = 717

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +E +  + D+ E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK
Sbjct: 657 KEGVEKLGDL-EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVK 714


>gi|282858123|ref|ZP_06267318.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
 gi|282584045|gb|EFB89418.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
          Length = 251

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 47/222 (21%)

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
            GS +   G T+ +   T+    +++    L G  +      Y+ LP +T  ++R+   S
Sbjct: 31  EGSCVISCGRTRVLCTATV----EDKVPPFLRGQGKGWVTAEYSLLPRST--MTRVPRDS 84

Query: 396 RREIGHGR------LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
            +   +GR      L  R++   +   A     + +  ++ ++DG +  A++ G+ +AL+
Sbjct: 85  TKGRINGRSQEIQRLIGRSLRAAVDLDALGERCVTLDCDVIQADGGTRTASITGAYVALV 144

Query: 450 DA-----------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF------- 491
           DA            +P+  PVA +++G V+      +L D+  +ED    +DF       
Sbjct: 145 DALRWLRGQGAFEKLPLKSPVAAVSVGKVRGQ----LLLDLCYEEDSTAEVDFNVVMNGQ 200

Query: 492 ----KVAGTDSGIT------AMQMDMKIGGISENIMVMALQQ 523
               +V GT  G        A  +D+   GI E   +MALQ+
Sbjct: 201 GDFIEVQGTGEGGVFSREEMAGMLDLASAGIHE---LMALQR 239


>gi|254434220|ref|ZP_05047728.1| ribonuclease PH [Nitrosococcus oceani AFC27]
 gi|207090553|gb|EDZ67824.1| ribonuclease PH [Nitrosococcus oceani AFC27]
          Length = 210

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 30/198 (15%)

Query: 366 LSGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           L GT R      Y  LP +T    G  +  G    R +   R   RA+  V+   A    
Sbjct: 22  LKGTGRGWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEV 81

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
           T+ +  ++ ++DG +  A + GS +AL+DA             PI   +A I++G + +G
Sbjct: 82  TVTLDCDVIQADGGTRTAAITGSYVALVDAINNRLKKRIITHSPIHGQLASISVG-IYEG 140

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE------NIMVMALQQA 524
              +   D+   ED     D  V   ++G       ++I G +E      N +   L  A
Sbjct: 141 TPVL---DLDYREDSTAETDMNVVMNEAGAF-----IEIQGTAEGHAFRMNELQAMLDLA 192

Query: 525 KRGRLHILNEMSKVLSES 542
           K G   +L + ++VL+++
Sbjct: 193 KSGINTLLAQQTEVLAKN 210


>gi|212723374|ref|NP_001131751.1| hypothetical protein LOC100193118 [Zea mays]
 gi|194692428|gb|ACF80298.1| unknown [Zea mays]
          Length = 146

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V K+  +GA V   G  R GL+HIS +S   V   SD++K  D V V ++  +  
Sbjct: 9   LLQGTVCKIFPYGARVRIAGTNRSGLLHISNISRGNVLSVSDILKIDDEVKVIVIKSNVP 68

Query: 681 GKIKLSMKVVDQNTG 695
            KI +S+  ++   G
Sbjct: 69  DKIAVSIADLESAPG 83


>gi|222475376|ref|YP_002563793.1| 30S ribosomal protein S1 (rpsA) [Anaplasma marginale str. Florida]
 gi|255003360|ref|ZP_05278324.1| 30S ribosomal protein S1 [Anaplasma marginale str. Puerto Rico]
 gi|222419514|gb|ACM49537.1| 30S ribosomal protein S1 (rpsA) [Anaplasma marginale str. Florida]
          Length = 559

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           E   I +G+V  +  +G F+        G  DGL+HI+ +S  RV+  S V   G TV  
Sbjct: 222 EEGSIIEGKVKSITKYGVFIGIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRA 281

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
           K++  D +  KI L +K ++++
Sbjct: 282 KIIRIDRENRKISLGVKQLEES 303



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDF 677
           V+ I+KG V  + D+G FV      +GL+H+S++S  R     +     G+ V  K+L  
Sbjct: 314 VDSIHKGIVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQTFMRGEEVEAKVLSL 373

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  + ++ LS+K   +N
Sbjct: 374 DAAKNRMSLSIKRCKEN 390


>gi|205372251|ref|ZP_03225065.1| transcription accessory protein [Bacillus coahuilensis m4-4]
          Length = 727

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVHIS+L    V    D   V +  TVWV  +D   +G
Sbjct: 656 QGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVTVWVDSVDV-QKG 714

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 715 RVALTM 720


>gi|307546985|ref|YP_003899464.1| ribonuclease PH [Halomonas elongata DSM 2581]
 gi|307219009|emb|CBV44279.1| ribonuclease PH [Halomonas elongata DSM 2581]
          Length = 245

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 19/171 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++  RDI       +   GS L   GDT+ +   ++    +      L G ++ 
Sbjct: 7   RPSGRATDQTRDIRLTRDYTRHAEGSVLVEFGDTRVLCNASV----EAGVPRWLRGKKQG 62

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    G  +  G    R +   RL  R++   +       +T+ +  +
Sbjct: 63  WVTAEYGMLPRATHTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVK 468
           + ++DG +  A + G  +AL+DA           G P  + ++ +++G+ +
Sbjct: 123 VIQADGGTRTAAITGGCVALVDAVRYLQREKLIKGDPFHQLISSVSVGIYQ 173


>gi|49474915|ref|YP_032956.1| 30S ribosomal protein S1 [Bartonella henselae str. Houston-1]
 gi|49237720|emb|CAF26909.1| 30S ribosomal protein S1 [Bartonella henselae str. Houston-1]
          Length = 566

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN   +G+V    +FG F+   G  DG+VH+S L   R   +  D   +GD V   +LD 
Sbjct: 369 VNSQIEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDV 428

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 429 DIEKERISLGIK 440


>gi|289662153|ref|ZP_06483734.1| ribonuclease PH [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 240

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|49473769|ref|YP_031811.1| 30S ribosomal protein S1 [Bartonella quintana str. Toulouse]
 gi|49239272|emb|CAF25593.1| 30s ribosomal protein s1 [Bartonella quintana str. Toulouse]
          Length = 566

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN   +G+V    +FG F+   G  DG+VH+S L   R   +  D   +GD V   +LD 
Sbjct: 369 VNSQIEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDV 428

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 429 DIEKERISLGIK 440


>gi|17546878|ref|NP_520280.1| ribonuclease PH [Ralstonia solanacearum GMI1000]
 gi|21759400|sp|Q8XXF5|RNPH_RALSO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17429178|emb|CAD15866.1| probable ribonuclease ph (rnase ph) (trnanucleotidyltransferase)
           protein [Ralstonia solanacearum GMI1000]
          Length = 238

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDT  +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHK----KGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S   A   ++ G      RL  RA+  V   +A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  DA           G PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAHDAISVMRKKGQLTGEPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  +  T +G
Sbjct: 173 LDLDYPEDASCDTDMNIVMTGAG 195


>gi|301629530|ref|XP_002943891.1| PREDICTED: 30S ribosomal protein S1-like [Xenopus (Silurana)
           tropicalis]
          Length = 390

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-D 679
           I KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  D +
Sbjct: 194 IVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVE 253

Query: 680 RGKIKLSMKVVD 691
           R +I L +K +D
Sbjct: 254 RERISLGIKQLD 265


>gi|261416587|ref|YP_003250270.1| Tex-like protein protein-like protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373043|gb|ACX75788.1| Tex-like protein protein-like protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325637|gb|ADL24838.1| tex protein [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 797

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           I++I D+       +G V  V +FGAFV     +DGLVHIS++S + V    DV+
Sbjct: 633 IKTINDLV-TGSWMEGVVTNVANFGAFVDIGVHQDGLVHISEISDKYVTDAKDVL 686


>gi|240849755|ref|YP_002971143.1| 30S ribosomal protein S1 [Bartonella grahamii as4aup]
 gi|240266878|gb|ACS50466.1| 30S ribosomal protein S1 [Bartonella grahamii as4aup]
          Length = 566

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN   +G+V    +FG F+   G  DG+VH+S L   R   +  D   +GD V   +LD 
Sbjct: 369 VNSQIEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDV 428

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 429 DIEKERISLGIK 440


>gi|239948344|ref|ZP_04700097.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922620|gb|EER22644.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 239

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 22/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGNTHVMCSATCET----TVPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGE-VSR---MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T + + R   +G    R     RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +A       LM   V    P+   +A I+ G+ K   + I+ 
Sbjct: 117 DVINADGGTRTAAITGSYVALHLVIRSLMKKRVLKVNPLISQIAAISCGIYK--GEAILD 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +    +
Sbjct: 175 LDYLEDSDAEVDSNFVFAG-NGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQN 233

Query: 537 KVL 539
           +VL
Sbjct: 234 QVL 236


>gi|218188557|gb|EEC70984.1| hypothetical protein OsI_02634 [Oryza sativa Indica Group]
          Length = 408

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V K+  +GA +   G  R GL+HIS +S   V   SD++K  D V V ++  +  
Sbjct: 259 LLQGIVRKIFPYGAQIRIAGTNRSGLLHISNISRGSVLSVSDILKIDDEVKVLVVKSNVP 318

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS+  ++   G
Sbjct: 319 DKIALSISDLESTPG 333


>gi|312863480|ref|ZP_07723718.1| S1 RNA binding domain protein [Streptococcus vestibularis F0396]
 gi|311101016|gb|EFQ59221.1| S1 RNA binding domain protein [Streptococcus vestibularis F0396]
          Length = 92

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G +  +  +GAFV       GL+HIS++ T  +    + +K    V V+++DFD+   K
Sbjct: 8   RGVITGIKPYGAFVSLENGTTGLIHISEIKTGYIDNIYNTLKVDQEVLVQVVDFDEFTQK 67

Query: 683 IKLSMKVVDQNTGKPIV 699
             LS++ +++   K ++
Sbjct: 68  ASLSLRTLEEEKIKFLI 84


>gi|302539288|ref|ZP_07291630.1| 30S ribosomal protein S1 [Streptomyces sp. C]
 gi|302448183|gb|EFL19999.1| 30S ribosomal protein S1 [Streptomyces sp. C]
          Length = 243

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            ++  +   V +  +G+V K++ FG FV      +GLVH+ +L+   V     VV+ GD 
Sbjct: 154 FKTFAETTTVGQALQGRVTKLVPFGVFVQVTNDIEGLVHLQELTWTPVEAPEAVVQIGDE 213

Query: 670 VWVKLLDFD 678
           + V + + D
Sbjct: 214 ITVVVTEID 222


>gi|284165987|ref|YP_003404266.1| nucleic acid binding OB-fold tRNA/helicase-type [Haloterrigena
           turkmenica DSM 5511]
 gi|284015642|gb|ADB61593.1| nucleic acid binding OB-fold tRNA/helicase-type [Haloterrigena
           turkmenica DSM 5511]
          Length = 735

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + Y+G V    DFG FV       GL+H S+L  +R  ++ D  + GD V+V++LD  D 
Sbjct: 39  RYYRGVVDGYADFGVFVDIGDHVTGLLHRSEL--DRRLESLD-WESGDEVFVQVLDVRDN 95

Query: 681 GKIKLSMKV 689
           G + L   +
Sbjct: 96  GNVDLGWSI 104


>gi|256396655|ref|YP_003118219.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
 gi|256362881|gb|ACU76378.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
          Length = 243

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R ++          GS L   G T+ +   ++     E     L G+ + 
Sbjct: 5   RVDGRKVGQLRPVTLTRKWSIHPEGSVLVEFGQTKVLCTASV----TEGVPRWLRGSGKG 60

Query: 373 DFMMHYNFLPCATG----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  RA+  V+   A    T+ +  +
Sbjct: 61  WVTAEYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRALRAVVDTKALGENTIIVDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G++    D + 
Sbjct: 121 VLQADGGTRTAAITGAYVALQDAVTWMRDKKMIKASREPLAGSVSAVSVGII----DGVP 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+  +ED     D  V  T  G
Sbjct: 177 MLDLCYEEDVRAETDMNVVCTADG 200


>gi|75909936|ref|YP_324232.1| 30S ribosomal protein S1P [Anabaena variabilis ATCC 29413]
 gi|75703661|gb|ABA23337.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
          Length = 302

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G++  +  FG FV   G    L+HI Q+S + +     V + G T+   ++D 
Sbjct: 197 EIGQLVEGKITGIKPFGVFVDLNGL-SALLHIKQVSQKFIESLEKVFQPGQTIKAIVIDL 255

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           D  +G++ +S + ++   G+
Sbjct: 256 DQGKGRVAISTRALENFPGE 275


>gi|74829982|emb|CAI38978.1| PMCA2 [Paramecium tetraurelia]
          Length = 1146

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           KD  ++E  +SQM K+ LR+ C     Y+  +  +DL+K     +  E        +  +
Sbjct: 570 KDIQEIERIISQMAKQSLRIICV---AYLDLRGDEDLQKMNGKVYDIETQDLTFLGLFGI 626

Query: 295 FEDIQAKVVRTVMLDK----KVRM-DGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
            ++++  V   V   K    KVRM  G +SET R I+   G++++  G ++ I G
Sbjct: 627 MDNLREGVKDAVTKCKQAGIKVRMVTGDNSETARAIAMNCGIIEQGDGQAIVIEG 681


>gi|309776489|ref|ZP_07671472.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915756|gb|EFP61513.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 89

 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           +GL+HIS++S   V      VK  + V VK+LD D+ G   KLS+K ++ N  + +
Sbjct: 2   NGLIHISEISERFVRDVHTYVKVNERVKVKILDVDEDGMHFKLSLKAIEANKARSM 57


>gi|99036036|ref|ZP_01315074.1| hypothetical protein Wendoof_01000091 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 264

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
           V+ ++KG V  +  +G FV      +GLVH S+++  +     S +V  G  V+VK+L  
Sbjct: 23  VDSVHKGYVTSIEGYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSI 82

Query: 678 D-DRGKIKLSMK 688
           D  + ++ LSMK
Sbjct: 83  DIAKSRMSLSMK 94


>gi|313893262|ref|ZP_07826837.1| ribonuclease R [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442158|gb|EFR60575.1| ribonuclease R [Veillonella sp. oral taxon 158 str. F0412]
          Length = 787

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 595 IASSSLAE---IEAAREMI---RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +  SS+ E    EA RE I   ++   VP V ++++G++  +  FG FV      DGLVH
Sbjct: 587 VEHSSIQEQVATEAERETIDLKKTQYMVPFVGEVFEGRIASITSFGMFVELENGIDGLVH 646

Query: 649 ISQLSTE 655
           IS ++ +
Sbjct: 647 ISMMNDD 653


>gi|289668014|ref|ZP_06489089.1| ribonuclease PH [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 241

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|219121604|ref|XP_002181153.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407139|gb|EEC47076.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 446

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +TD   V + Y G+VV    FG F+      D   H+S+   + V     V + GD V
Sbjct: 265 KPVTDF-RVGESYPGKVVYSKQFGVFLDIGSHSDAFCHVSRCQDDFVESAEAVHRPGDEV 323

Query: 671 WVKLLDFDDRGK 682
             ++L+ D R K
Sbjct: 324 SARILEIDKRRK 335


>gi|171911330|ref|ZP_02926800.1| S1 RNA-binding domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 785

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+SQLS   V   S+VVK    V V + + D  R +I
Sbjct: 654 GIVTNVTAFGAFVDIGVHQDGLVHVSQLSDHFVKDASEVVKVQQKVQVTVTEVDLQRKRI 713

Query: 684 KLSMK 688
            LSMK
Sbjct: 714 ALSMK 718


>gi|194205704|ref|XP_001499541.2| PREDICTED: RRP5-like protein [Equus caballus]
          Length = 1945

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G FV F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 806 GFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 865

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 866 LLSLRLSDCTLG 877


>gi|73998783|ref|XP_535003.2| PREDICTED: similar to RRP5 protein homolog (Programmed cell death
            protein 11) [Canis familiaris]
          Length = 2113

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625  GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            G V  + D+G FV F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 972  GFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 1031

Query: 684  KLSMKVVDQNTG 695
             LS+++ D   G
Sbjct: 1032 LLSLRLSDCGLG 1043


>gi|163867382|ref|YP_001608576.1| 30S ribosomal protein S1 [Bartonella tribocorum CIP 105476]
 gi|161017023|emb|CAK00581.1| 30S ribosomal protein S1 [Bartonella tribocorum CIP 105476]
          Length = 566

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
           VN   +G+V    +FG F+   G  DG+VH+S L   R   +  D   +GD V   +LD 
Sbjct: 369 VNSQIEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDV 428

Query: 678 D-DRGKIKLSMK 688
           D ++ +I L +K
Sbjct: 429 DIEKERISLGIK 440


>gi|331007601|ref|ZP_08330748.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
 gi|330418594|gb|EGG93113.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
          Length = 239

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  +  R I       +   GS L   G+T+ I   ++    +      L G  + 
Sbjct: 3   RPSGRTPDQTRPIRLTKNFTKHAEGSVLIEFGETKVICTASI----ENSVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                Y  LP +T   SRM      G  + R +   RL  R++   +        T+ I 
Sbjct: 59  WITAEYGMLPRSTH--SRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDA-------GV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL DA       G     P+++ +A I++G+ + G+  + 
Sbjct: 117 CDVIQADGGTRTASITGACVALADALNKLLANGTLKQNPLTRMIASISVGIYQ-GEAVL- 174

Query: 476 LSDISGDEDHLGHMDFK-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             D+   ED     D   V   D G+  +Q   +    SE   +  L  AK+G
Sbjct: 175 --DLDYPEDSSADTDMNIVMADDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKG 225


>gi|108758625|ref|YP_630239.1| ribonuclease PH [Myxococcus xanthus DK 1622]
 gi|122389586|sp|Q1DAT4|RNPH_MYXXD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|108462505|gb|ABF87690.1| ribonuclease PH [Myxococcus xanthus DK 1622]
          Length = 237

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 43/240 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ L  G ++R ++G+V   +G T VL T   +  +     G+    +T  Y       
Sbjct: 12  RPVVLTPG-VSRYAEGSVQVEFGHTKVLVTCSTEERVPPHLMGKGSGWVTAEY------- 63

Query: 71  GKIPGGYLRRESRP------TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDL 122
           G +P     R  R       T   + I R+I RS+R     S        +  +V+Q D 
Sbjct: 64  GMLPRATHSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLTLDCDVLQAD- 122

Query: 123 ESSPHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
                  S+  A  AL+L           S LP   P+    V  + G+  ++   DED 
Sbjct: 123 -GGTRTASITGAYVALVLALRSLQKAGTISKLPKLTPLAAVSVGIVKGEVRVDLDYDEDS 181

Query: 172 GS-LDLFVSGTQDAVLMVELEA---NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            + +DL +  T D   MVEL+    +QL +   LDA++ G       + AI KL    A+
Sbjct: 182 TADVDLNLVATADG-RMVELQGTAEHQLFDRKALDAMVDGG------LAAIQKLTAAQAQ 234


>gi|84622697|ref|YP_450069.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899009|ref|YP_199782.2| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578263|ref|YP_001915192.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|123522908|sp|Q2P6N2|RNPH_XANOM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736951|sp|B2SLL1|RNPH_XANOP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84366637|dbj|BAE67795.1| Ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522715|gb|ACD60660.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 241

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT  +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|16923217|gb|AAL29894.1| plasma membrane Ca2+ ATPase isoform 2 [Paramecium tetraurelia]
          Length = 1146

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           KD  ++E  +SQM K+ LR+ C     Y+  +  +DL+K     +  E        +  +
Sbjct: 570 KDIQEIERIISQMAKQSLRIICV---AYLDLRGDEDLQKMNGKVYDIETQDLTFLGLFGI 626

Query: 295 FEDIQAKVVRTVMLDK----KVRM-DGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
            ++++  V   V   K    KVRM  G +SET R I+   G++++  G ++ I G
Sbjct: 627 MDNLREGVKDAVTKCKQAGIKVRMVTGDNSETARAIAMNCGIIEQGDGQAIVIEG 681


>gi|156936879|ref|YP_001434675.1| DNA-directed RNA polymerase subunit E' [Ignicoccus hospitalis
           KIN4/I]
 gi|156565863|gb|ABU81268.1| DNA-directed RNA polymerase, subunit E' [Ignicoccus hospitalis
           KIN4/I]
          Length = 177

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVK 665
           P  N++ +G VV V   G +V+  G  DG+VH +QL  ER              T  V+K
Sbjct: 79  PLRNEVVEGIVVNVTKNGIYVN-IGPIDGMVHKAQLGDERFEYDAATGSMVGTSTKTVIK 137

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            GD V  +++    R  +K+ M +     GK
Sbjct: 138 RGDLVRARIVQISTRRGLKVGMSMKGPYLGK 168


>gi|15217547|ref|NP_177317.1| S1 RNA-binding domain-containing protein [Arabidopsis thaliana]
          Length = 487

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G VVK++ +GA V     +R GL+HIS ++  R+   SDV++  ++V V ++     
Sbjct: 351 LLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFP 410

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS+  ++   G
Sbjct: 411 DKISLSIADLESEPG 425


>gi|255066782|ref|ZP_05318637.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
 gi|255048857|gb|EET44321.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
          Length = 241

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L    GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKGQGWVTA 64

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R  A + ++ G      RL  R++  ++         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL 448
           DG +  A++ G+ +AL
Sbjct: 125 DGGTRTASITGAFVAL 140


>gi|241651518|ref|XP_002411275.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503905|gb|EEC13399.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 765

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V     FGAFV     +DGL+H SQ++  R       V  GD V V +++ 
Sbjct: 698 EVGQELTGKVKNCTQFGAFVDIGVGKDGLIHCSQMNGHR-------VNLGDRVTVLVVNL 750

Query: 678 D-DRGKIKL 685
           +  RG+I L
Sbjct: 751 ERSRGRIGL 759


>gi|123965829|ref|YP_001010910.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200195|gb|ABM71803.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9515]
          Length = 408

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ +G+V+ +  +G FV   GA  GL+H S ++   +    ++ +EG+ +   + + 
Sbjct: 297 KLGQLIEGEVLGIKPYGFFVDLGGA-SGLLHQSSITNGSIRNLREIFEEGELIKALITEI 355

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +RG+I L+  +++ + G+ IV
Sbjct: 356 DLERGRIGLNTALLENSPGELIV 378


>gi|33861087|ref|NP_892648.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639819|emb|CAE18989.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 405

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G+V+ +  +G FV   GA  GL+H S ++   +    ++ +EG+ +   + + D +
Sbjct: 300 QLIEGEVLAIKPYGFFVDLGGA-SGLLHQSSITNGSIRNLREIFREGEVIKALITEIDLE 358

Query: 680 RGKIKLSMKVVDQNTGKPIV 699
           RG+I L+  +++   G+ I+
Sbjct: 359 RGRIGLNTALLENTPGELII 378


>gi|17228573|ref|NP_485121.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
 gi|17130424|dbj|BAB73035.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
          Length = 305

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G++  +  FG FV   G    L+HI Q+S + +     V + G T+   ++D 
Sbjct: 197 EIGQLVEGKITGIKPFGVFVDLNGL-SALLHIKQVSQKFIESLEKVFQPGQTIKAIVIDL 255

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           D  +G++ +S + ++   G+
Sbjct: 256 DQGKGRVAISTRALENFPGE 275


>gi|258541167|ref|YP_003186600.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256632245|dbj|BAH98220.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256635302|dbj|BAI01271.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-03]
 gi|256638357|dbj|BAI04319.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-07]
 gi|256641411|dbj|BAI07366.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-22]
 gi|256644466|dbj|BAI10414.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-26]
 gi|256647521|dbj|BAI13462.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-32]
 gi|256650574|dbj|BAI16508.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653565|dbj|BAI19492.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-12]
          Length = 244

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 23/201 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ + G      GS+L   G T+ +   ++    + +    L G   
Sbjct: 1   MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASI----ENRVPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       A   ++ G      RL  R++  V    A    ++ +  
Sbjct: 57  GWVTAEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD----D 472
           ++  +DG +  A++ G+ +AL  A            +P+   VA ++ GL  +G     D
Sbjct: 117 DVLNADGGTRCASITGAWVALRLALGKLVATNVLPRLPLRGQVAAVSCGLTTEGAVLDLD 176

Query: 473 FIILSDISGDEDHLGHMDFKV 493
           ++  S  S D + +   D ++
Sbjct: 177 YVEDSSASADTNFVLTADRRI 197


>gi|57233914|ref|YP_182001.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
 gi|123618391|sp|Q3Z6Z8|RNPH_DEHE1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|57224362|gb|AAW39419.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
          Length = 239

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 72/188 (38%), Gaps = 37/188 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD-------RSLKDGQ-----DFFPL-T 60
           RP+ +  G     ++G+VL   G+T V+ +V  +       R+   G         P  T
Sbjct: 13  RPITITPG-FQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTAEYSMLPRST 71

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V   +R  + GKI G       R  E    I R+I RS+R         E   II+    
Sbjct: 72  VTRTQRDSSAGKISG-------RSQE----IQRLIGRSLRSCVDLAALGERSFIIDCDVI 120

Query: 121 DLESSPHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169
             ++     S+  A  AL           +LS +PF   V    V    G  VL+P  DE
Sbjct: 121 QADAGTRTASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180

Query: 170 D-QGSLDL 176
           D Q  +D 
Sbjct: 181 DFQAEVDF 188


>gi|7239499|gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from
           this gene [Arabidopsis thaliana]
 gi|332197102|gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
          Length = 500

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G VVK++ +GA V     +R GL+HIS ++  R+   SDV++  ++V V ++     
Sbjct: 364 LLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFP 423

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS+  ++   G
Sbjct: 424 DKISLSIADLESEPG 438


>gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
 gi|306532771|gb|ADN02305.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
          Length = 226

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 24/230 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM-HYNF 380
           +R +S + G+L    GS L   G+T+ +   ++     E+ V      +   ++   Y  
Sbjct: 1   MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAASI-----EEGVPPFIEQEGEGWLTAEYAM 55

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           LP +  E  +      R +   R   R++   + +T   PYT+ +  ++ ++DG +  A 
Sbjct: 56  LPASVPEGRKRRERDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAA 115

Query: 441 VCGSSLALMDA--------GVP-----ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           + G  +AL  A        GV      +   VA +++G+V+      +++D+    D   
Sbjct: 116 ISGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEG----RLVADLDFAHDLAA 171

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            +D  V   D  +  +Q + + G  + + +   L  A R  + I+ E  +
Sbjct: 172 QVDMNVVMCDDRLVEVQGNGEKGSFTRDELDAMLDLAAR-EIRIIYEAQR 220


>gi|46201192|ref|ZP_00055593.2| COG0689: RNase PH [Magnetospirillum magnetotacticum MS-1]
          Length = 239

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 22/208 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +  + G+ +   GS +   GDT  +   ++    +E+    L  T +
Sbjct: 1   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASV----EEKVPPFLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +   A   ++ G      RL  R++  V    A     ++I  
Sbjct: 57  GWVTAEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQIKIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL  A            +P++  VA I+ G + +G   + L
Sbjct: 117 DVLQADGGTRTASITGAFVALHLAFQRLVRLELLKAIPLTDHVAAISCG-IYEGTAVLDL 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            D   D +     +F + G + GI  +Q
Sbjct: 176 -DYPEDSNAQADANFVMTG-NGGIVEIQ 201


>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex exonuclease RRP46-like [Nomascus
           leucogenys]
          Length = 235

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 15/163 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           ++R  + +  LL R  GS+ F++GDT  +  V  G  E +     +S    N   +    
Sbjct: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK-----VSKEIFNKATLEVIL 80

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++  P   E    RL R     V+  T     ++ +V ++    GS     
Sbjct: 81  RP-------KIRLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 133

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +  + +AL+DAGVP+     G+   L  D D  ++L   S  E
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCAL--DSDGTLVLDPTSKQE 174


>gi|294011052|ref|YP_003544512.1| ribonuclease PH [Sphingobium japonicum UT26S]
 gi|292674382|dbj|BAI95900.1| ribonuclease PH [Sphingobium japonicum UT26S]
          Length = 238

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +RDI+ + G      GS L   GDT+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDQMRDITMEPGFTIHAEGSCLVSFGDTRVLCTASI----EEKVPPFLRGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       A   ++ G      RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
           ++ ++DG +  A + GS +A       L+ +G     PI + VA I+ G+
Sbjct: 117 DVIQADGGTRTAAISGSWVALRIAIDGLLASGALAEDPIVQKVAAISCGI 166


>gi|505623|gb|AAB81284.1| plasma membrane calcium ATPase [Paramecium tetraurelia]
          Length = 1160

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           KD  ++E  +SQM K+ LR+ C     Y+  +  +DL+K     +  E        +  +
Sbjct: 588 KDIQEIERIISQMAKQSLRIICV---AYLDLRGDEDLQKMNGKVYDIETQDLTFLGLFGI 644

Query: 295 FEDIQAKVVRTVMLDK----KVRM-DGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
            ++++  V   V   K    KVRM  G +SET R I+   G++++  G ++ I G
Sbjct: 645 MDNLREGVKDAVTKCKQAGIKVRMVTGDNSETARAIAMNCGIIEQGDGQAIVIEG 699


>gi|27378132|ref|NP_769661.1| amidohydrolase [Bradyrhizobium japonicum USDA 110]
 gi|27351279|dbj|BAC48286.1| amidohydrolase [Bradyrhizobium japonicum USDA 110]
          Length = 390

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
           T R  I  + PD  + V     +V+ G+ + TGAK+++       + ++  AE E AR +
Sbjct: 257 TLRGTIRTLSPDVRKLVEKRVHEVVAGVAQITGAKIDLHYKRNYPVVNNHAAETEVARRI 316

Query: 610 IRSI---TDVPEVNKIYKGQVVKVM---DFGAFVHFCGARD--GLVHISQLSTERVAKTS 661
            R +    +V E+  +  G+    M     GAF+ FCG  D  GL H +    +      
Sbjct: 317 ARQVAGEANVHEMPPLMGGEDFAYMLEARPGAFI-FCGNGDSAGLHHPAYNFND------ 369

Query: 662 DVVKEGDTVWVKLLD 676
           + +  G + WVKL++
Sbjct: 370 EAIVFGTSYWVKLVE 384


>gi|325002805|ref|ZP_08123917.1| RNA binding S1 domain-containing protein [Pseudonocardia sp. P1]
          Length = 753

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I+D+     + +G V  V  FGAFV     +DGLVH+S +S + V+   +V K G
Sbjct: 648 EGVHKISDL-RPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKDFVSDPREVAKSG 706

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           D V VK+LD D+ R +I L++++ D+
Sbjct: 707 DVVKVKVLDVDEARKRISLTLRLDDE 732


>gi|15892898|ref|NP_360612.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|229586977|ref|YP_002845478.1| ribonuclease PH [Rickettsia africae ESF-5]
 gi|238651083|ref|YP_002916941.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
 gi|21759407|sp|Q92GZ7|RNPH_RICCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494127|sp|C3PP75|RNPH_RICAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494128|sp|C4K2U2|RNPH_RICPU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15620088|gb|AAL03513.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|228022027|gb|ACP53735.1| Ribonuclease PH [Rickettsia africae ESF-5]
 gi|238625181|gb|ACR47887.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
          Length = 239

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 28/246 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCET----TVPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +  A   ++ G      RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGD---DF 473
           ++  +DG +  A + GS +A       LM   V    P+   +A I+ G+ K G+   D 
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYK-GEAILDL 175

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             L D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +  
Sbjct: 176 DYLEDSDADVDS----NFVFAG-NGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFK 230

Query: 534 EMSKVL 539
             ++VL
Sbjct: 231 LQNQVL 236


>gi|224585533|ref|YP_002639332.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470061|gb|ACN47891.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 228

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 23/193 (11%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R ++      +   GS L   GDT+ +   ++    +E     L G  +      Y  L
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEYGML 56

Query: 382 PCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT   +   A   ++ G      RL  RA+   +       +T+ +  ++ ++DG + 
Sbjct: 57  PRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGGTR 116

Query: 438 MATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G+ +AL DA             P+   VA +++G+V +G+    + D+   ED  
Sbjct: 117 TASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIV-NGE---AICDLEYVEDSA 172

Query: 487 GHMDFKVAGTDSG 499
              D  V  T+ G
Sbjct: 173 AETDMNVVMTEDG 185


>gi|157828824|ref|YP_001495066.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933550|ref|YP_001650339.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
 gi|166228313|sp|A8GT33|RNPH_RICRS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043770|sp|B0BUM3|RNPH_RICRO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157801305|gb|ABV76558.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908637|gb|ABY72933.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
          Length = 239

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 22/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCET----TVPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +  A   ++ G      RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +A       LM   V    P+   +A I+ G+ K   + I+ 
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYK--GEVILD 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +    +
Sbjct: 175 LDYLEDSDADVDSNFVFAG-NGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQN 233

Query: 537 KVL 539
           +VL
Sbjct: 234 QVL 236


>gi|301614745|ref|XP_002936843.1| PREDICTED: protein RRP5 homolog [Xenopus (Silurana) tropicalis]
          Length = 1818

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +M +GAFV F     GLV  S++S + V   SD + EG TV  K++  D ++ + 
Sbjct: 732 GFVKSIMPYGAFVEFPYGLFGLVPKSEISDKFVTNISDHLFEGQTVLAKVIKTDEEKQRF 791

Query: 684 KLSMKV 689
            L++K+
Sbjct: 792 LLTLKM 797


>gi|302780185|ref|XP_002971867.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
 gi|302781232|ref|XP_002972390.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
 gi|300159857|gb|EFJ26476.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
 gi|300160166|gb|EFJ26784.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
          Length = 297

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARD-----GLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++  +  GQV  ++D+GAFV    A       GLVH+ ++S + V    DV+  G  V V
Sbjct: 99  QIGNVLDGQVTGIVDYGAFVDIRYADGTYPAVGLVHVKEISWDTVTNPRDVLSVGQDVKV 158

Query: 673 KLLDFDDRG-KIKLSMK 688
           K+   D+   ++ LS++
Sbjct: 159 KVTGIDEESMRLALSIR 175


>gi|293605635|ref|ZP_06688015.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292816015|gb|EFF75116.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 244

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 25/203 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R  S + G  +   GS L   GDT  +   ++     E+    L G    
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASV----LEKVPPFLKGKGEG 64

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      E +R G  S R     RL  R++  V    A    TL +  
Sbjct: 65  WVTAEYGMLPRATHTRGDREAAR-GKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDC 123

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       LM  G     PI   VA +++GLV+ G   +  
Sbjct: 124 DVLQADGGTRCASITGAWVAAADAVALLMKRGDLAVNPIRDAVAAVSVGLVQ-GRSVL-- 180

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 181 -DLDYQEDSACDADVNVIMTGSG 202


>gi|237743440|ref|ZP_04573921.1| ribonuclease ph [Fusobacterium sp. 7_1]
 gi|229433219|gb|EEO43431.1| ribonuclease ph [Fusobacterium sp. 7_1]
          Length = 434

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR+    R I     +     GS L   G+T+ I   ++     ++    L GT +
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASV----TDKVPSFLRGTGK 57

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     +  G  + R +   RL  RA+   +         + I  
Sbjct: 58  GWVTAEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G  +AL  A             P+   VA I++G V       ++
Sbjct: 118 DVIQADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISNVAAISVGKVNSE----LM 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  V     G
Sbjct: 174 VDLKYSEDFAAEVDMNVIMNKKG 196


>gi|38234105|ref|NP_939872.1| putative transcriptional accessory protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200367|emb|CAE50054.1| Putative transcriptional accessory protein [Corynebacterium
           diphtheriae]
          Length = 758

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I +I+D+ +   + +G V  V  FGAFV     +DGLVH+S LS   V+     V  
Sbjct: 627 KEGIENISDL-KPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALSDSFVSDPHQFVHS 685

Query: 667 GD-TVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           G       +     R +I L+M++ D +  KP
Sbjct: 686 GQVVRVKVVDVDTQRKRIGLTMRLND-DPAKP 716


>gi|260436360|ref|ZP_05790330.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
 gi|260414234|gb|EEX07530.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
          Length = 390

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +GQV  V  +G F+   G   GL+H S ++   +    +V  +GD V   + + 
Sbjct: 281 EVGQLVEGQVAAVKPYGLFIDLGGI-SGLLHQSAITNGSLRSIREVFDQGDRVSALITEL 339

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 340 DPGRGRIGLNTALLEGPPGELLI 362


>gi|225848130|ref|YP_002728293.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644676|gb|ACN99726.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 573

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG+V K+++ GAFV      +G + +S++S ER+   SD +     V  K++  
Sbjct: 434 KVGDVVKGKVKKLIEKGAFVDITDEIEGFIPVSEISKERIKIPSDKLSLHQEVEAKIIKI 493

Query: 678 DDRG-KIKLSMK--VVDQ 692
           D +  KI LS+K  ++DQ
Sbjct: 494 DTQNKKITLSIKQLILDQ 511


>gi|297582863|ref|YP_003698643.1| Tex-like protein protein-like protein [Bacillus selenitireducens
           MLS10]
 gi|297141320|gb|ADH98077.1| Tex-like protein protein-like protein [Bacillus selenitireducens
           MLS10]
          Length = 724

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           +G V  V+DFGAFV     +DGLVH+S+L    V    D   V +  TVWV  +D   +G
Sbjct: 655 EGTVRNVVDFGAFVDIGVKQDGLVHVSKLRKGFVKNPMDVVNVGDVVTVWVDSVDV-HKG 713

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 714 RIALTM 719


>gi|294788446|ref|ZP_06753689.1| S1 RNA binding domain protein [Simonsiella muelleri ATCC 29453]
 gi|294483877|gb|EFG31561.1| S1 RNA binding domain protein [Simonsiella muelleri ATCC 29453]
          Length = 770

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E +  I+D+ +V  I +G V  V +FGAFV     +DGLVHIS L+ + V+   D
Sbjct: 649 EGVNEISDL-QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISMLADKFVSDPRD 702


>gi|269798070|ref|YP_003311970.1| ribonuclease R [Veillonella parvula DSM 2008]
 gi|269094699|gb|ACZ24690.1| ribonuclease R [Veillonella parvula DSM 2008]
          Length = 764

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 595 IASSSLAEIEAAREMIRSITD-------VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +  SS+ E + A E  R  TD       VP V ++++G +  +  FG FV      DGLV
Sbjct: 564 VEHSSIQE-QVATEAERETTDLKKTQYMVPFVGEVFEGTIASITSFGMFVELENGIDGLV 622

Query: 648 HISQLS 653
           HIS ++
Sbjct: 623 HISMMN 628


>gi|15921175|ref|NP_376844.1| translation initiation factor IF-2 subunit alpha [Sulfolobus
           tokodaii str. 7]
 gi|20532122|sp|Q973G0|IF2A_SULTO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|15621960|dbj|BAB65953.1| 263aa long hypothetical translation initiation factor 2 alpha
           subunit [Sulfolobus tokodaii str. 7]
          Length = 263

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           MI +   +P   +I    V ++ D+G++V     G     +  S++S+  V    DV+KE
Sbjct: 1   MIYNKNPIPTEGEILIATVKQIFDYGSYVTLDEYGNLQAFLPWSEISSRWVKNIRDVIKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
           G  + VK++  D R G I +S+K V ++
Sbjct: 61  GRKIVVKVIRVDKRKGTIDVSLKKVTED 88


>gi|301756220|ref|XP_002913967.1| PREDICTED: protein RRP5 homolog [Ailuropoda melanoleuca]
          Length = 1907

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G FV F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 763 GFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 822

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 823 LLSLRLSDCGLG 834


>gi|284053153|ref|ZP_06383363.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
           str. Paraca]
 gi|291567299|dbj|BAI89571.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
          Length = 294

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V  +  FG F+   G   GL+HI ++S + V    D+   G TV   ++  
Sbjct: 191 QVGQLVEGTVGSIKPFGVFIELEGV-TGLIHIKEVSQKYVGSLPDIFTLGQTVKALVISL 249

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           ++ R ++ LS ++++   G+
Sbjct: 250 EEGRQRVSLSTRLLENYPGE 269


>gi|281352084|gb|EFB27668.1| hypothetical protein PANDA_001797 [Ailuropoda melanoleuca]
          Length = 1874

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G FV F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 731 GFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 790

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 791 LLSLRLSDCGLG 802


>gi|237749261|ref|ZP_04579741.1| octaprenyl-diphosphate synthase [Oxalobacter formigenes OXCC13]
 gi|229380623|gb|EEO30714.1| octaprenyl-diphosphate synthase [Oxalobacter formigenes OXCC13]
          Length = 329

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88
           GA++A   E  + A   Y RSL          ++Y   T  +GK  G  L RE + T   
Sbjct: 189 GALIAHASEKEIEAAAAYGRSLGIAFQLVDDLLDYAGETDVLGKTVGNDL-REGKMTLPL 247

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
           I +    D SIR    +C +N          HD  S P ++  V AS AL
Sbjct: 248 IFLMSHCDESIRKTIRECIEN----------HDEASLPFILEAVKASDAL 287


>gi|223933143|ref|ZP_03625135.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|223898204|gb|EEF64573.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
          Length = 713

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 12/75 (16%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---------SDVVKEGD--TVWV 672
           +G V  ++DFGAFV      DGLVHIS++      K          S+V+  G+  TVWV
Sbjct: 633 QGTVRNIVDFGAFVDIGVHEDGLVHISRMVKRNRDKNGRQQALPHPSEVLAVGEIVTVWV 692

Query: 673 KLLDFDDRGKIKLSM 687
             +D   R +I LS+
Sbjct: 693 VEVDI-KRNRIGLSL 706


>gi|254424229|ref|ZP_05037947.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
 gi|196191718|gb|EDX86682.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
          Length = 795

 Score = 38.5 bits (88), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V  V +FGAFV     +DGLVH+SQ+S   V+   ++V+ G  V V++++  ++ 
Sbjct: 645 VLEGVVTNVANFGAFVDIGVHQDGLVHVSQMSDRYVSDPKEIVQVGQVVNVQVMEVQEKL 704

Query: 682 K-IKLSMKV 689
           K I LSM++
Sbjct: 705 KRIGLSMRL 713


>gi|332638877|ref|ZP_08417740.1| transcriptional accessory protein [Weissella cibaria KACC 11862]
          Length = 727

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +G V  V+DFGAFV      DGLVHIS+++   V    ++V  G
Sbjct: 657 QGTVRNVVDFGAFVDLGVHEDGLVHISRMAKRMVKNPHEIVAVG 700


>gi|239978292|ref|ZP_04700816.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
          Length = 273

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G VV+++ FG  V       GL+H+S+L     A    +V EG+ + VK+ + D +R
Sbjct: 200 VLTGTVVRILPFGVLVRLAPDVVGLLHLSELGGGPSATPGRLVAEGEPITVKVAEVDLER 259

Query: 681 GKIKL 685
            +++L
Sbjct: 260 HRVRL 264


>gi|332970519|gb|EGK09508.1| YhgF like protein [Desmospora sp. 8437]
          Length = 749

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KG V  V+DFGAFV      DGLVHIS++S
Sbjct: 681 KGTVRNVVDFGAFVDIGLKNDGLVHISKMS 710


>gi|304317243|ref|YP_003852388.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778745|gb|ADL69304.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 634

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 2/31 (6%)

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFI 258
           EP  +D  DFSK+EEEM+++IKEDL++  F+
Sbjct: 109 EPFTVD--DFSKIEEEMNKIIKEDLKLERFV 137


>gi|157826032|ref|YP_001493752.1| ribonuclease PH [Rickettsia akari str. Hartford]
 gi|166228310|sp|A8GPB9|RNPH_RICAH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157799990|gb|ABV75244.1| ribonuclease PH [Rickettsia akari str. Hartford]
          Length = 239

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 22/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L  T GS +   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINTEGSCIIKIGNTHVMCSATCET----TVPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +  A   ++ G      RL  R++  V+         + I  
Sbjct: 57  GWVTAEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A++ GS +A       LM   +    P+   +A ++ G+ K   + I+ 
Sbjct: 117 DVINADGGTRTASITGSYVALHLAIRSLMKKRILKVNPLISQIAAVSCGIYK--GEAILD 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +    +
Sbjct: 175 LDYLEDSDAEVDSNFVFAG-NGNLIEVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQN 233

Query: 537 KVL 539
           +VL
Sbjct: 234 QVL 236


>gi|197106932|ref|YP_002132309.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
 gi|226736923|sp|B4RC87|RNPH_PHEZH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196480352|gb|ACG79880.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
          Length = 238

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 11/134 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-----DGQDFFPLTVNYQER-T 67
           RP+ LETG + R ++G+ LA++G T VL T   +  +       GQ +         R T
Sbjct: 12  RPVTLETG-VNRYAEGSCLASFGHTKVLVTASLEEGVPPFLRGKGQGWVTAEYGMLPRAT 70

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           +  G+      ++  R  E    I R+I RS+R +       E Q+ ++      +    
Sbjct: 71  HTRGRREAAQGKQSGRTQE----IQRLIGRSLRAVVDLKALGERQITVDCDVVQADGGTR 126

Query: 128 VVSMVAASAALMLS 141
             ++  A  AL L+
Sbjct: 127 TAAITGAWVALRLA 140


>gi|33239981|ref|NP_874923.1| ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237507|gb|AAP99575.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 417

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G+V+ V  +G FV   G   GL+H S ++   +    +V  +GD V   + D 
Sbjct: 308 EVGQLIEGKVISVKPYGFFVDLGGI-SGLLHQSMITNGSLRSLREVFNQGDNVKALITDL 366

Query: 678 DD-RGKIKLS 686
           D  RG+I L+
Sbjct: 367 DPARGRIGLN 376


>gi|282850297|ref|ZP_06259676.1| ribonuclease R [Veillonella parvula ATCC 17745]
 gi|282579790|gb|EFB85194.1| ribonuclease R [Veillonella parvula ATCC 17745]
          Length = 787

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 595 IASSSLAEIEAAREMIRSITD-------VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +  SS+ E + A E  R  TD       VP V ++++G +  +  FG FV      DGLV
Sbjct: 587 VEHSSMQE-QVATEAERETTDLKKTQYMVPFVGEVFEGTIASITSFGMFVELENGIDGLV 645

Query: 648 HISQLS 653
           HIS ++
Sbjct: 646 HISMMN 651


>gi|322698144|gb|EFY89917.1| rRNA biogenesis protein RRP5, putative [Metarhizium acridum CQMa 102]
          Length = 1796

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDT 669
            S  D+ E   +  G+V KV +FGAF+    + +  GL H S+++ E V   + + KEGD 
Sbjct: 1288 SYNDIKE-GSVVTGKVRKVEEFGAFILVDNSNNVSGLCHRSEMADEAVKDATKLYKEGDA 1346

Query: 670  VWVKLLDFD 678
            V   +L+ D
Sbjct: 1347 VKALVLEVD 1355


>gi|145483559|ref|XP_001427802.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394885|emb|CAK60404.1| unnamed protein product [Paramecium tetraurelia]
          Length = 738

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           KD  ++E  +SQM K+ LR+ C     Y+  +  +DL+K     +  E        +  +
Sbjct: 162 KDIQEIERIISQMAKQSLRIICV---AYLDLRGDEDLQKMNGKVYDIETQDLTFLGLFGI 218

Query: 295 FEDIQAKVVRTVMLDK----KVRM-DGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
            ++++  V   V   K    KVRM  G +SET R I+   G++++  G ++ I G
Sbjct: 219 MDNLREGVKDAVTKCKQAGIKVRMVTGDNSETARAIAMNCGIIEQGDGQAIVIEG 273


>gi|315635018|ref|ZP_07890299.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315476280|gb|EFU67031.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 238

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 42/187 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNY------ 63
           RP+K+ T    + ++G+VL  +G+T VL T   +    R LK GQ    +T  Y      
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGDTKVLCTATVEDGVPRFLK-GQGQGWVTAEYGMLPRS 69

Query: 64  ----QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII--NV 117
                +R  A GK  G  L            I R+I RS+R +       E  V +  +V
Sbjct: 70  THSRMQREAAKGKQGGRTLE-----------IQRLIARSLRAMVDLEALGERCVTLDCDV 118

Query: 118 MQHDLESSPHVVSMVAASAALM--LSGL---------PFEGPVVGAQVDYINGQYVLNPR 166
           +Q D        S+  A  AL   L+GL         P +G V    V  +NG+ V +  
Sbjct: 119 IQAD--GGTRTASITGACVALCDALNGLVANGTLSKNPLKGLVAAISVGIVNGEAVCDLE 176

Query: 167 LDEDQGS 173
             ED  +
Sbjct: 177 YVEDSAA 183


>gi|78776336|ref|YP_392651.1| competence protein ComEA helix-hairpin-helix region [Sulfurimonas
           denitrificans DSM 1251]
 gi|78496876|gb|ABB43416.1| Competence protein ComEA helix-hairpin-helix region [Sulfurimonas
           denitrificans DSM 1251]
          Length = 657

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 613 ITDVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ITD+    V     G V  + DFGAFV      DG++HIS+++  +V+   +V+     +
Sbjct: 578 ITDIKMLHVGSFVSGVVRNITDFGAFVDIGLKNDGMIHISKMAPTKVSHPLEVLSLNQYL 637

Query: 671 -WVKLLDFD-DRGKIKLSM 687
             ++++  D ++GK+ LS+
Sbjct: 638 PQIEVISIDEEKGKVGLSL 656


>gi|78778915|ref|YP_397027.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
 gi|78712414|gb|ABB49591.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
          Length = 404

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L+E +A+  ++  +T + ++ ++ +G+V+ V  +G F+   GA  GL+H S L+   +  
Sbjct: 281 LSEKKAS--LVSKLTSL-DLGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTKGSIRS 336

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             ++ +EG+ +   + + D ++G+I L+  +++ + G+ I+
Sbjct: 337 LREIFREGEIIKALISEIDLEKGRIGLNTALLENSAGELII 377


>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
           DSM 4304]
 gi|29336575|sp|O29756|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
 gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
 gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
 gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
 gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
 gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
 gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
 gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 259

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 296 EDIQAKVVRTVMLDK---KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           EDI   + R  +L K     R+DGR  +  R +     ++++  GS+L   GDTQ  VVV
Sbjct: 3   EDILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQ--VVV 60

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            +  +  E Y D+     R   +++   +P A+      G P    I   R+  R I 
Sbjct: 61  GVKMQPGEPYPDT---PDRGVIIVNAELVPLASPTFEP-GPPDENSIELARVVDRGIR 114


>gi|34581401|ref|ZP_00142881.1| ribonuclease PH [Rickettsia sibirica 246]
 gi|28262786|gb|EAA26290.1| ribonuclease PH [Rickettsia sibirica 246]
          Length = 239

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 28/246 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCET----TVPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +  A   ++ G      RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGD---DF 473
           ++  +DG +  A + GS +A       LM   V    P+   +A I+ G+ K G+   D 
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYK-GEAILDL 175

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             L D   D D     +F  AG +  +  +Q   +    SE   +  L+ AK G   +  
Sbjct: 176 DYLEDSDADVDS----NFVFAG-NGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFK 230

Query: 534 EMSKVL 539
             ++VL
Sbjct: 231 LQNQVL 236


>gi|167044420|gb|ABZ09096.1| putative S1 RNA binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG6D9]
          Length = 264

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKE 666
           M   I ++PE  +I    V KVMD GA+V      +  G +HIS+++   +   S  VK+
Sbjct: 1   MSTEIQEMPEQGEIILATVTKVMDHGAYVTLDEYDEIQGFLHISEIAPGWIRSISRFVKD 60

Query: 667 GD--TVWVKLLDFDDRGKIKLSMKVVDQN 693
           G+   + VK ++   RG I LS+K V ++
Sbjct: 61  GEKKVLLVKKVNI-KRGDIDLSLKQVSKD 88


>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149388461|gb|EAZ63552.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 241

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 33/212 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTH-----GSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +R+DGR    +R+   ++     TH     GSS   +G+T+ I VV  G  E        
Sbjct: 9   LRIDGRRWNEIRNFECRIN----THPNSSDGSSYIEQGNTKVICVVQ-GPMEPALR---- 59

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-------F 419
           S    N+  +  N        V+      R++          +   L +T Q       +
Sbjct: 60  SQANSNEATLEVNL------SVANFSTTERKKRSKSEKRMVQLKTTLERTFQQSVMCNLY 113

Query: 420 PYTL-RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           P TL RI   +   DG    A     +LAL+DAGV +   VA +  GL     D   L D
Sbjct: 114 PRTLIRIDLHVLSQDGGMLAACTNAMTLALIDAGVSMYDYVAAMTAGL----HDQTPLLD 169

Query: 479 ISG-DEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           ++G +E+ +  +   V G    ++ + ++ KI
Sbjct: 170 MNGLEENDMSTLTIGVIGKSEKLSLLMLEDKI 201


>gi|225181236|ref|ZP_03734681.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168016|gb|EEG76822.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 713

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           G V  V+DFGAFV     +DGL+HISQLS
Sbjct: 646 GVVRNVVDFGAFVDIGVHQDGLIHISQLS 674


>gi|198435767|ref|XP_002132011.1| PREDICTED: similar to High density lipoprotein binding protein
           (vigilin) [Ciona intestinalis]
          Length = 1243

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSLAEIEAAREMIRSI 613
           +N+IG GG  IR I E+T  ++ +   D D  V + +   A+ E AR++IR+I
Sbjct: 581 KNIIGKGGANIRKIREETNTQIELPKEDSDNEVIVITGKKADCEKARKLIRAI 633


>gi|270308459|ref|YP_003330517.1| ribonuclease PH [Dehalococcoides sp. VS]
 gi|270154351|gb|ACZ62189.1| ribonuclease PH [Dehalococcoides sp. VS]
          Length = 239

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TV   +R  + GKI G       R  E    I R+I RS+R         E   II+   
Sbjct: 71  TVTRTQRDSSAGKISG-------RSQE----IQRLIGRSLRSCVDLTALGERSFIIDCDV 119

Query: 120 HDLESSPHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLD 168
              ++     S+  A  AL           +LS +PF   V    V    G  VL+P  D
Sbjct: 120 IQADAGTRTASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGNIVLDPCYD 179

Query: 169 ED-QGSLDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIE 216
           ED Q  +D F     D    VE+    E    S D +   +  G +  K + +
Sbjct: 180 EDFQAEVD-FNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFD 231


>gi|239617308|ref|YP_002940630.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506139|gb|ACR79626.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 715

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGL+H +++  + V    +V+  G  V VK+L  D +R +
Sbjct: 647 EGTVRNVVDFGAFVDIGVKQDGLIHKTRMG-KNVCDPLEVLSVGQIVKVKVLSIDLERER 705

Query: 683 IKLSM 687
           I L +
Sbjct: 706 IALEL 710


>gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 255

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 25/210 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R DGR    +R +S   G      GS L   G+T+ + V +          DS 
Sbjct: 1   MTNSPLRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFTEGVPRWKRDSG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y+ LP AT + S      G    R     RL  R++  ++  +A    T
Sbjct: 61  EGW----VTAEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-------GV--P----ISKPVAGIAMGLVKD 469
           + +  ++  +DG +  A+V G+ +AL DA       G+  P    ++  V+ +++G++  
Sbjct: 117 IVLDCDVLRADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGII-- 174

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
             D   ++D+   ED     D  V  T  G
Sbjct: 175 --DGTAMADLPYVEDVRAQTDMNVVQTGDG 202


>gi|294784524|ref|ZP_06749813.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
 gi|294487740|gb|EFG35099.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
          Length = 434

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR     R I     +     GS L   G+T+ I   ++     ++    L GT +
Sbjct: 2   LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASV----TDKVPSFLRGTGK 57

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     +  G  S R +   RL  RA+   +         + I  
Sbjct: 58  GWITAEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDC 117

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G  +A       L+D  +    P+   VA I++G +       ++
Sbjct: 118 DVIQADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISNVAAISVGKINSE----LM 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  V     G
Sbjct: 174 VDLKYSEDFAAEVDMNVIMNKKG 196


>gi|294793805|ref|ZP_06758942.1| ribonuclease R [Veillonella sp. 3_1_44]
 gi|294455375|gb|EFG23747.1| ribonuclease R [Veillonella sp. 3_1_44]
          Length = 787

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 595 IASSSLAEIEAAREMIRSITD-------VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +  SS+ E + A E  R  TD       VP V ++++G +  +  FG FV      DGLV
Sbjct: 587 VEHSSIQE-QVATEAERETTDLKKTQYMVPFVGEVFEGTIASITSFGMFVELENGIDGLV 645

Query: 648 HISQLS 653
           HIS ++
Sbjct: 646 HISMMN 651


>gi|194378984|dbj|BAG58043.1| unnamed protein product [Homo sapiens]
          Length = 1299

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|325499450|gb|EGC97309.1| ribonuclease PH [Escherichia fergusonii ECD227]
          Length = 228

 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 23/193 (11%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R ++      +   GS L   GDT+ +   ++    +E     L G  +      Y  L
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEYGML 56

Query: 382 PCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P +T   +   A   ++ G      RL  RA+   +   A   +T+ +  ++ ++DG + 
Sbjct: 57  PRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTR 116

Query: 438 MATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G+ +AL DA             P+   VA +++G+V +G+    + D+   ED  
Sbjct: 117 TASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIV-NGE---AVCDLEYVEDSA 172

Query: 487 GHMDFKVAGTDSG 499
              D  V  T+ G
Sbjct: 173 AETDMNVVMTEDG 185


>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
          Length = 291

 Score = 38.1 bits (87), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 76/189 (40%), Gaps = 29/189 (15%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GT 369
           +R+DGR    +R + AQ+       GSS F  G T+ + VVT G  E +Q        G 
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVT-GPSEQQQAQVQAQRRGA 71

Query: 370 Q---RNDFMMHYNFLPCATGEVSRMGAPSR-----REIGHGRLARRA-----------IH 410
           Q   R+   +  N +      V R           REI H  L  R            I 
Sbjct: 72  QASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIA 131

Query: 411 PVLPQTAQ---FPYTLRIVS-EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             L  T     FP++   VS  +   DGS   A +  ++LA++DAG+P++  +A    G 
Sbjct: 132 KALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAGS 191

Query: 467 VKD---GDD 472
                 GDD
Sbjct: 192 TSSYAAGDD 200


>gi|297622726|ref|YP_003704160.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
 gi|297163906|gb|ADI13617.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
          Length = 236

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 27/201 (13%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ-RNDF 374
           GR    +R+I    G  +   GS+L   GDT+ +  VT+    + +    L G + R  +
Sbjct: 4   GRQPFQLREIRVTPGYNRFAEGSALVEWGDTRVLATVTV----ENKLPPHLRGKKGRVGW 59

Query: 375 MM-HYNFLPCATGEVS---RMGAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +   Y  LP +T E +   R+ A  R  EI   RL  R++  V   T     TL +  ++
Sbjct: 60  LTAEYAMLPRSTAERTQRERLYAGGRSLEI--QRLIGRSLRSVTDLTLFHGQTLTVDVDV 117

Query: 430 TESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A +     AL  A             P++  VA +++G+V+ G+  +   D
Sbjct: 118 LQADGGTRCAGILAGYAALHHAAGRLVRKGALDEWPLTHEVAAVSVGVVR-GETLL---D 173

Query: 479 ISGDEDHLGHMDFKVAGTDSG 499
           +   ED    +D  V  T  G
Sbjct: 174 LDFHEDAAAEIDLNVVATADG 194


>gi|300783475|ref|YP_003763766.1| transcriptional accessory protein [Amycolatopsis mediterranei U32]
 gi|299792989|gb|ADJ43364.1| transcriptional accessory protein [Amycolatopsis mediterranei U32]
          Length = 793

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 25/45 (55%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           +G V  V  FGAF+     +DGL H+S LS   V    +VVK GD
Sbjct: 657 EGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPREVVKPGD 701


>gi|294882535|ref|XP_002769730.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
 gi|239873471|gb|EER02448.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
          Length = 333

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEG--DTVWV 672
           PE+++     V +V D  A+V  C   D  G+V +S+LS  R+     ++K G  DT  V
Sbjct: 18  PEIDQCIVALVKQVTDVAAYVSLCEYDDMEGMVQLSELSKRRIRSIPKLIKVGRFDTFMV 77

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +D  ++G I LS K V +   + +
Sbjct: 78  LRVD-KEKGYIDLSKKRVSREDAEAL 102


>gi|218247633|ref|YP_002373004.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257061032|ref|YP_003138920.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
 gi|218168111|gb|ACK66848.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
 gi|256591198|gb|ACV02085.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
          Length = 719

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G +  V++FGAFV     +DGLVHISQL+   +    +VVK G  V VK+L+ +++ 
Sbjct: 648 ILEGIITNVVNFGAFVDIGVHQDGLVHISQLADYFIKDPKEVVKVGQVVKVKVLEVNEKL 707

Query: 682 K-IKLSMKV 689
           K I LSMK+
Sbjct: 708 KRINLSMKL 716


>gi|332212080|ref|XP_003255151.1| PREDICTED: protein RRP5 homolog [Nomascus leucogenys]
          Length = 1804

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 666 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 725

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 726 LLSLRLSDCGLG 737


>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
 gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
          Length = 180

 Score = 38.1 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR     R    + G +    GS+    G+T+ IV V  G RE ++ +      + 
Sbjct: 33  VRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSV-FGPRESKKAMMYSDVGRL 91

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
           N  + +  F     G+ S     S   + H  L    +    P+T     T+ + + + E
Sbjct: 92  NCNVSYTTFSTPVRGQGSDCKEFS--SMLHKSLEGAIMLETFPKT-----TVDVFALVLE 144

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           S GS     V  +SLAL DAG+ +   VAG+++
Sbjct: 145 SGGSDLSVIVSCASLALADAGIMMYDLVAGVSV 177


>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
          Length = 257

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 14/166 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGRD +  R    + G +    GS+    G+T+ IV V  G RE ++ +      + 
Sbjct: 34  LRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSV-FGPRESKKAMVYSDVGRL 92

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRR--EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           N  +    F   A G    +G+ ++    + H  L    +    P+T     T+ + + +
Sbjct: 93  NCNVSCTTFATPARG----LGSDNKEFSSMLHKALEGAIMLETFPKT-----TVDVFALV 143

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
            ES GS     +  +SLAL DAG+ +   VAG+++  +  G + II
Sbjct: 144 LESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCL--GRNLII 187


>gi|119503532|ref|ZP_01625615.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
 gi|119460594|gb|EAW41686.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
          Length = 243

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R I+ +        GS L   G T+ +   +L           L G  + 
Sbjct: 7   RPSGRALDELRAITFERNFTCHAEGSVLVSFGQTRVLCTASL----TPGVPGFLRGKGQG 62

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP +TG     E SR G  S R +   RL  R++   +   A    TL +  
Sbjct: 63  WLTAEYGMLPRSTGSRMNREASR-GKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDC 121

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +A++DA
Sbjct: 122 DVIQADGGTRTASISGACVAVVDA 145


>gi|86140955|ref|ZP_01059514.1| putative RNA binding protein with S1 RNA-binding domain
           [Leeuwenhoekiella blandensis MED217]
 gi|85832897|gb|EAQ51346.1| putative RNA binding protein with S1 RNA-binding domain
           [Leeuwenhoekiella blandensis MED217]
          Length = 711

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  I D+ E +++  G V  + +FGAFV       GL+HIS L+   V+  +  V   + 
Sbjct: 629 IHKIEDL-EPDQLLPGIVNNITNFGAFVDIGIKESGLIHISNLADGYVSDVNAHVSLQEQ 687

Query: 670 VWVKLLDFD-DRGKIKLSM 687
           V VK+L+ D  R +I+L +
Sbjct: 688 VVVKVLEVDIKRKRIQLKL 706


>gi|257464104|ref|ZP_05628488.1| transcription accessory protein [Fusobacterium sp. D12]
 gi|317061623|ref|ZP_07926108.1| transcription accessory protein [Fusobacterium sp. D12]
 gi|313687299|gb|EFS24134.1| transcription accessory protein [Fusobacterium sp. D12]
          Length = 710

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +G V  V+ FGAFV      D L+HIS +S E V+  S V+  G  + V++ + D
Sbjct: 655 EGTVRNVVKFGAFVDIGLKNDALLHISAISDEFVSDPSKVLSVGQIIKVRIKEID 709


>gi|29436556|gb|AAH49838.1| PDCD11 protein [Homo sapiens]
          Length = 1436

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
           acetivorans C2A]
 gi|29336812|sp|Q8TGX5|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
 gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
          Length = 266

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 30/180 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS--LKDGQDFFPLTVNYQERTYAVG 71
           R LKLET  I + ++G+   T G T VL  V         D QD   +  N +    A  
Sbjct: 35  RDLKLETNVIVK-AEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASP 93

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-----LFSKCYK-NETQVIINVMQHDLESS 125
           +   G       P E  I ++R++DR IR      +   C    E+  I+ +  H L   
Sbjct: 94  EFEPG------PPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHVLNDD 147

Query: 126 PHVV--SMVAASAALMLSGLPFEG-------PV------VGAQVDYINGQYVLNPRLDED 170
            +++  S +AA AALM + +P E        P+      VG  +  I  + +++P LDE+
Sbjct: 148 GNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKLMVDPSLDEE 207


>gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 239

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++     L+   GS L   GDT+ +   ++    ++       GT   
Sbjct: 3   RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASV----EDGVPRWRRGTGEG 58

Query: 373 DFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T       S  G    R     RL  R++  V+   A   +T+ +  +
Sbjct: 59  WVTAEYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P++  +A +++G+V+         
Sbjct: 119 VLQADGGTRTAAITGAYVALADAMKWLRKRRKLKNNPLTGSLAAVSVGVVQGQPRL---- 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D++  ED +   D  V  T  G
Sbjct: 175 DLNYLEDSVADTDMNVVITGDG 196


>gi|40352805|gb|AAH64486.1| PDCD11 protein [Homo sapiens]
 gi|51593565|gb|AAH80560.1| PDCD11 protein [Homo sapiens]
          Length = 1434

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|15790501|ref|NP_280325.1| hypothetical protein VNG1511C [Halobacterium sp. NRC-1]
 gi|10581003|gb|AAG19805.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 684

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + Y+G V    +FG FV   G   GL+H S++     +   DV   GD V+V++ D  D 
Sbjct: 41  RFYRGTVDGFAEFGVFVDVGGTVTGLLHRSEVPGRVDSLAWDV---GDDVFVQVTDVHDN 97

Query: 681 GKIKLSMKV 689
           G I L   +
Sbjct: 98  GNIDLGWSI 106


>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
           AV19]
 gi|29336820|sp|Q8TYC2|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
 gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
           RNase PH [Methanopyrus kandleri AV19]
          Length = 267

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           R+DGRD E  R I  + G++ + +GS+L   G+TQ +V V L
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKL 64


>gi|255263447|ref|ZP_05342789.1| ribonuclease PH [Thalassiobium sp. R2A62]
 gi|255105782|gb|EET48456.1| ribonuclease PH [Thalassiobium sp. R2A62]
          Length = 235

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 34/236 (14%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ +  + +   GS L   GDT  +   T+  R      +S  G   
Sbjct: 1   MRPSGRSIDEMRAITIETDVTKHAEGSCLIQCGDTHVLCAATVEDRVPPFMRNSGLGW-- 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG---------RLARRAIHPVLPQTAQFPYT 422
                 Y  LP AT   +RM    RRE  +G         RL  R++   + + A     
Sbjct: 59  --VTAEYGMLPRATN--TRM----RREAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQ 110

Query: 423 LRIVSEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A++ G  +A       L+ AG     P+  PVA I+ G+   G 
Sbjct: 111 ITVDCDVIQADGGTRCASITGGWVALKLAVNKLIKAGDIISDPLETPVAAISCGIYA-GQ 169

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             +   D+   ED    +D     T S +  +QM  +    S + M   +  A++G
Sbjct: 170 AVL---DLDYPEDSEAGVDGNFVMTGSQMIEVQMSAEGATFSRDQMNELVDLAEKG 222


>gi|170078958|ref|YP_001735596.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002]
 gi|169886627|gb|ACB00341.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002]
          Length = 296

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A  E++R ++    +  +  G VV +  +G FV   G   GL+H SQ+S + V +   + 
Sbjct: 183 AQAEVMRRLS----IGALVSGTVVNIKPYGVFVELDGM-TGLLHRSQISAKPVEQIEALF 237

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
             G TV V + D ++   +I LS++ +++  G+ I
Sbjct: 238 SIGQTVRVLITDIEESNNRISLSLQALEKFPGEVI 272


>gi|168272922|dbj|BAG10300.1| RRP5 protein homolog [synthetic construct]
          Length = 1871

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|169236237|ref|YP_001689437.1| hypothetical protein OE3155R [Halobacterium salinarum R1]
 gi|167727303|emb|CAP14089.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 682

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + Y+G V    +FG FV   G   GL+H S++     +   DV   GD V+V++ D  D 
Sbjct: 39  RFYRGTVDGFAEFGVFVDVGGTVTGLLHRSEVPGRVDSLAWDV---GDDVFVQVTDVHDN 95

Query: 681 GKIKLSMKV 689
           G I L   +
Sbjct: 96  GNIDLGWSI 104


>gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
 gi|148845783|gb|EDL60125.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
          Length = 828

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD--TVWVKLLDFDDRG 681
           +G V+ V+DFGAFV        L+H+S+++   +      V  GD  T WV  +D + R 
Sbjct: 669 QGTVLNVVDFGAFVDVGLKDSALIHVSEMANHFIENPYQFVSVGDVITAWVLGVDLERR- 727

Query: 682 KIKLSM 687
           ++ L++
Sbjct: 728 RVSLTL 733


>gi|119570024|gb|EAW49639.1| programmed cell death 11, isoform CRA_a [Homo sapiens]
          Length = 1872

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|70980549|ref|NP_055791.1| protein RRP5 homolog [Homo sapiens]
 gi|145559523|sp|Q14690|RRP5_HUMAN RecName: Full=Protein RRP5 homolog; AltName:
           Full=NF-kappa-B-binding protein; Short=NFBP; AltName:
           Full=Programmed cell death protein 11
 gi|55662191|emb|CAH71487.1| programmed cell death 11 [Homo sapiens]
 gi|55961127|emb|CAI16749.1| programmed cell death 11 [Homo sapiens]
 gi|55961865|emb|CAI15102.1| programmed cell death 11 [Homo sapiens]
 gi|119570026|gb|EAW49641.1| programmed cell death 11, isoform CRA_c [Homo sapiens]
 gi|225000512|gb|AAI72442.1| Programmed cell death 11 [synthetic construct]
          Length = 1871

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|294876739|ref|XP_002767778.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
 gi|239869623|gb|EER00496.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
          Length = 333

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEG--DTVWV 672
           PE+++     V +V D  A+V  C   D  G+V +S+LS  R+     ++K G  DT  V
Sbjct: 18  PEIDQCIVALVKQVTDVAAYVSLCEYDDMEGMVQLSELSKRRIRSIPKLIKVGRFDTFMV 77

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +D  ++G I LS K V +   + +
Sbjct: 78  LRVD-KEKGYIDLSKKRVSREDAEAL 102


>gi|119570025|gb|EAW49640.1| programmed cell death 11, isoform CRA_b [Homo sapiens]
          Length = 1872

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|327291344|ref|XP_003230381.1| PREDICTED: tudor and KH domain-containing protein-like, partial
           [Anolis carolinensis]
          Length = 480

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L E  P  E + +P   I  +IG GG+ +R I + TGAKV          + SS  E E 
Sbjct: 122 LVESLPVQEKIKVPRRAIGRIIGRGGETVRAICKNTGAKVECG-------SKSSTQEGEE 174

Query: 606 AREMIRSIT 614
           A  +IR+IT
Sbjct: 175 ALLLIRTIT 183


>gi|94496905|ref|ZP_01303479.1| RNase PH [Sphingomonas sp. SKA58]
 gi|94423581|gb|EAT08608.1| RNase PH [Sphingomonas sp. SKA58]
          Length = 238

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 19/170 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R+I+ + G      GS L   GDT+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDQMRNITMEPGFTIHAEGSCLVSFGDTRVLCTASV----EEKVPPFLRGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       A   ++ G      RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
           ++ ++DG +  A + GS +A       L+ +G     PI + VA I+ G+
Sbjct: 117 DVIQADGGTRTAAISGSWVALRIAVDKLLASGALTQDPIIQKVAAISCGI 166


>gi|84040294|gb|AAI11041.1| PDCD11 protein [Homo sapiens]
          Length = 1444

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|1136430|dbj|BAA11502.1| KIAA0185 [Homo sapiens]
          Length = 1884

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 747 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 806

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 807 LLSLRLSDCGLG 818


>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
          Length = 282

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           + +  D   R DGR +  +R+I  + G++ +  GS+    G+T+ I  V      D + V
Sbjct: 28  KGIQPDAPKRHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVF-----DPREV 82

Query: 364 DSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-Y 421
            + +G   + +    + F P +  +  +M      E  +  + +RA+ P +    +FP +
Sbjct: 83  PNKTGYCVQGELFCEFKFAPFSHHK-RKMHQQDAEEKEYSLILQRALEPAV-CLQEFPNF 140

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
            + + + + ++ GS+  A +  +SLAL +AGVP+   V    +G+
Sbjct: 141 QVDVYATVLDNGGSALAAAIMAASLALANAGVPMFGLVTASTVGI 185


>gi|254418052|ref|ZP_05031776.1| ribonuclease PH [Brevundimonas sp. BAL3]
 gi|196184229|gb|EDX79205.1| ribonuclease PH [Brevundimonas sp. BAL3]
          Length = 241

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-----DGQDFFPLTVNYQER-T 67
           RP+ +ETG + R ++G+ L T+G T VL T   + ++       GQ +         R T
Sbjct: 12  RPVTIETG-VNRYAEGSCLITFGHTKVLVTASVEETIPGWMRGKGQGWVTAEYGMLPRAT 70

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESS 125
           +  G+      ++  R  E    I R+I RS+R +       E QV++  +V+Q D  + 
Sbjct: 71  HTRGRREAAAGKQTGRTQE----IQRLIGRSLRAVVDLKALGERQVVLDCDVIQADGGTR 126

Query: 126 PHVVSMVAASAALMLSGLPFEG 147
              ++    + A  L+ L  EG
Sbjct: 127 TASITGAWVAMASALNYLRDEG 148


>gi|114564986|ref|YP_752500.1| ribonuclease PH [Shewanella frigidimarina NCIMB 400]
 gi|122298386|sp|Q07WF3|RNPH_SHEFN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114336279|gb|ABI73661.1| RNAse PH [Shewanella frigidimarina NCIMB 400]
          Length = 237

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 27/205 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   GDT+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRSFTAHAEGSVLVEFGDTKVLCTASF----TEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G  S R     RL  RA+   +        T+ I
Sbjct: 57  GWVTAEYGMLPRSTH--SRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-------GVPISKP----VAGIAMGLVKDGDDFI 474
             ++ ++DG +  A + G+ +AL+DA       G+  + P    +A +++G+ K G+   
Sbjct: 115 DCDVIQADGGTRTAAITGACVALVDALNWARGKGIIKANPLKFLIAAVSVGIYK-GE--- 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG 499
            +SD+   ED     D  V  T++G
Sbjct: 171 AISDLEYIEDSAAETDMNVVMTETG 195


>gi|332835295|ref|XP_508013.3| PREDICTED: protein RRP5 homolog [Pan troglodytes]
          Length = 1871

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 734 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 793

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 794 LLSLRLSDCGLG 805


>gi|323705353|ref|ZP_08116928.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535255|gb|EGB25031.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 365

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +I +  +V  I  G +  V  FGAFV      +GL H + L      K     K GD + 
Sbjct: 264 NINEKFKVGDIILGIITNVTTFGAFVEISEGLEGLAHKNDL-----IKNVKEYKIGDEIT 318

Query: 672 VKLLDFDDRGKIKLSMKVVDQNT 694
           V+++ FD   K KLS+K V++N+
Sbjct: 319 VEIISFDSEKK-KLSLKEVEKNS 340


>gi|256026996|ref|ZP_05440830.1| ribonuclease PH [Fusobacterium sp. D11]
 gi|289764980|ref|ZP_06524358.1| ribonuclease ph [Fusobacterium sp. D11]
 gi|289716535|gb|EFD80547.1| ribonuclease ph [Fusobacterium sp. D11]
          Length = 428

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR+    R I     +     GS L   G+T+ I   ++     ++    L GT +
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASV----TDKVPSFLRGTGK 57

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     +  G  + R +   RL  RA+   +         + I  
Sbjct: 58  GWVTAEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G  +AL  A             P+   VA I++G V       ++
Sbjct: 118 DVIQADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISNVAAISVGKVNSE----LM 173

Query: 477 SDISGDEDHLGHMDFKV 493
            D+   ED    +D  V
Sbjct: 174 VDLKYSEDFAAEVDMNV 190


>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 265

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R+DGR    +R + AQ+     + GSS    G+T +I+    G  E  +     +G+ 
Sbjct: 13  RLRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNT-SIMCSVHGPAEGRRGDGGSAGSG 71

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA---RRAIHPVLPQTAQFPY-TLRIV 426
                +  N    A  +  R    S R+    R+A   R A    L  T  +P+ T+ I 
Sbjct: 72  HAVVEVDVNVAGFAGVDRKRRAGGSDRQ--SSRIATTLRSAFQSHL-HTYLYPHSTISIH 128

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  +DGS   A +   +LAL+DAG+P+   + G   G+
Sbjct: 129 VSVLSADGSLLAAALNACTLALVDAGIPMPGLLCGCTSGM 168


>gi|194041963|ref|XP_001926809.1| PREDICTED: protein RRP5 homolog [Sus scrofa]
          Length = 1885

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 742 GFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 801

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 802 LLSLRLSDCTLG 813


>gi|110638729|ref|YP_678938.1| S1 RNA-binding domain-containing protein [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281410|gb|ABG59596.1| S1 RNA-binding domain protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 754

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +  V  FG FV     +DGL+HIS LS   ++  S+VVK    V V +L+ D+ R +I
Sbjct: 649 GIITNVTKFGVFVDIGVHQDGLIHISHLSDRFISDPSEVVKVQQKVQVTVLEVDEARKRI 708

Query: 684 KLSMK 688
            LSMK
Sbjct: 709 SLSMK 713


>gi|312195804|ref|YP_004015865.1| Tex-like protein [Frankia sp. EuI1c]
 gi|311227140|gb|ADP79995.1| Tex-like protein [Frankia sp. EuI1c]
          Length = 877

 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           + +G V  V  FGAFV     +DGLVH+S +S   V    +V K GD
Sbjct: 673 VLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVRDPREVAKPGD 719


>gi|209522969|ref|ZP_03271526.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
 gi|209496556|gb|EDZ96854.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
          Length = 294

 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V  +  FG F+   G   GL+HI ++S + V    D+   G TV   ++  
Sbjct: 191 QVGQLVEGTVGSIKPFGVFIELEGV-TGLIHIKEVSQKYVGSLPDIFTIGQTVKALVISL 249

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           ++ R ++ LS ++++   G+
Sbjct: 250 EEGRQRVSLSTRLLENYPGE 269


>gi|119491098|ref|ZP_01623256.1| conserved hypothetical ATP-binding protein [Lyngbya sp. PCC 8106]
 gi|119453643|gb|EAW34803.1| conserved hypothetical ATP-binding protein [Lyngbya sp. PCC 8106]
          Length = 1150

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P+   +Y G V  +   GA+V F     G V  ++L   R+ +    V  G  V VK+  
Sbjct: 375 PKQGNVYSGYVTSLTSGGAYVEFLPDTQGFVPTNKLVDRRIERPEQAVSVGQKVVVKVYS 434

Query: 677 FDDRGKIKLS 686
            + R +I+L+
Sbjct: 435 INSRDEIELT 444


>gi|114330679|ref|YP_746901.1| RNA-binding S1 domain-containing protein [Nitrosomonas eutropha
           C91]
 gi|114307693|gb|ABI58936.1| RNA binding S1 domain protein [Nitrosomonas eutropha C91]
          Length = 740

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I S+TD+ +   I +G V  V  FGAFV     +DGLVH+S L+ + +     +V +
Sbjct: 664 QEGIESLTDL-QSGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSSLANKFIKDPHSIVNK 722


>gi|294887089|ref|XP_002771974.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
 gi|239875834|gb|EER03790.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
          Length = 325

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEG--DTVWV 672
           PE+++     V +V D  A+V  C   D  G+V +S+LS  R+     ++K G  DT  V
Sbjct: 18  PEIDQCVVALVKQVTDVAAYVSLCEYDDMEGMVQLSELSKRRIRSIPKLIKVGRYDTFMV 77

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +D  ++G I LS K V +   + +
Sbjct: 78  LRVD-KEKGYIDLSKKRVSREDAEAL 102


>gi|254172346|ref|ZP_04879022.1| DNA-directed RNA polymerase [Thermococcus sp. AM4]
 gi|214034242|gb|EEB75068.1| DNA-directed RNA polymerase [Thermococcus sp. AM4]
          Length = 186

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 12/70 (17%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           P ++++ +G+V+ V  +GAFV   G  DGLVHISQL  + V            +T  ++K
Sbjct: 79  PFMHEVVEGEVIDVAPYGAFVR-IGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILK 137

Query: 666 EGDTVWVKLL 675
            GD V  +++
Sbjct: 138 LGDEVRARVI 147


>gi|222480804|ref|YP_002567041.1| DNA-directed RNA polymerase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453706|gb|ACM57971.1| DNA-directed RNA polymerase [Halorubrum lacusprofundi ATCC 49239]
          Length = 191

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ++T  P++ ++  G VV+ ++FGAFV   G  DGL+H+SQ++ E
Sbjct: 74  ALTYDPDMQEVADGTVVETVEFGAFV-GIGPVDGLLHVSQITDE 116


>gi|284050747|ref|ZP_06380957.1| cell divisionFtsK/SpoIIIE [Arthrospira platensis str. Paraca]
 gi|291570122|dbj|BAI92394.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1129

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 35/75 (46%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S+   P+   +Y G V  +   GA+V F     G V   +L   R+ +  + V  G  V 
Sbjct: 349 SVGAKPKQGNVYSGYVTSLTSGGAYVEFLPNTQGFVPTPKLVDRRIYRPEEAVSVGQKVV 408

Query: 672 VKLLDFDDRGKIKLS 686
           VK+   + R +I+L+
Sbjct: 409 VKVHSINSRDEIELT 423


>gi|163747514|ref|ZP_02154864.1| 30S ribosomal protein S1 [Oceanibulbus indolifex HEL-45]
 gi|161379192|gb|EDQ03611.1| 30S ribosomal protein S1 [Oceanibulbus indolifex HEL-45]
          Length = 558

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ G+V  + D+GAFV      +GLVH+S++S T++      +V     V V +L+ D  
Sbjct: 282 VHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGA 341

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L +K   +N
Sbjct: 342 KRRVSLGLKQTMRN 355


>gi|94988955|ref|YP_597056.1| hypothetical protein MGAS9429_Spy1325 [Streptococcus pyogenes
           MGAS9429]
 gi|94990955|ref|YP_599055.1| hypothetical protein MGAS10270_Spy1446 [Streptococcus pyogenes
           MGAS10270]
 gi|94992848|ref|YP_600947.1| hypothetical protein MGAS2096_Spy1351 [Streptococcus pyogenes
           MGAS2096]
 gi|94994835|ref|YP_602933.1| hypothetical protein MGAS10750_Spy1439 [Streptococcus pyogenes
           MGAS10750]
 gi|306826952|ref|ZP_07460252.1| S1 RNA binding domain protein [Streptococcus pyogenes ATCC 10782]
 gi|94542463|gb|ABF32512.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS9429]
 gi|94544463|gb|ABF34511.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS10270]
 gi|94546356|gb|ABF36403.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS2096]
 gi|94548343|gb|ABF38389.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS10750]
 gi|304430970|gb|EFM33979.1| S1 RNA binding domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 125

 Score = 38.1 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++D D+   K 
Sbjct: 9   GTITGIKPYGAFVALDNGTTGLIHISEIKTGFIDDIDQLLAIGNQVLVQVIDIDEYSKKA 68

Query: 684 KLSMKVVDQ 692
            LSM+ + +
Sbjct: 69  SLSMRTLAE 77


>gi|330834297|ref|YP_004409025.1| translation initiation factor IF-2 subunit alpha [Metallosphaera
           cuprina Ar-4]
 gi|329566436|gb|AEB94541.1| translation initiation factor IF-2 subunit alpha [Metallosphaera
           cuprina Ar-4]
          Length = 255

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           MI +   +P   +I    V KV D+G++V     G     +  S++ST  V    DVVKE
Sbjct: 1   MIYNRYPLPREGEILIATVRKVFDYGSYVTLDEYGGLQAYLPWSEISTRWVKNIRDVVKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
              V VK++  D R G + +S+K V+ +  K
Sbjct: 61  DRKVIVKVIRVDRRKGTVDVSLKKVNDDDRK 91


>gi|159903074|ref|YP_001550418.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888250|gb|ABX08464.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9211]
          Length = 416

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ +I  G+++ +  +G FV   G   GL+H S ++   +    +V  +G+++   + D 
Sbjct: 306 EIGQIVAGEILAIKPYGFFVDLGGV-SGLLHQSMITNGSIRSLREVFSQGESIKALITDL 364

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ +V
Sbjct: 365 DPKRGRIGLNTALLEGPPGEILV 387


>gi|116072199|ref|ZP_01469466.1| RNA binding S1 [Synechococcus sp. BL107]
 gi|116064721|gb|EAU70480.1| RNA binding S1 [Synechococcus sp. BL107]
          Length = 412

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  V  +G F+   G   GL+H S ++   +    +V  EGD V   + D 
Sbjct: 303 EVGQLVDGLVASVKPYGLFIDLGGI-SGLLHQSAITNGSLRSIREVFDEGDRVSALITDL 361

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 362 DPGRGRIGLNTALLEGPPGELLI 384


>gi|71909462|ref|YP_287049.1| ribonuclease PH [Dechloromonas aromatica RCB]
 gi|123626372|sp|Q479A2|RNPH_DECAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71849083|gb|AAZ48579.1| RNAse PH [Dechloromonas aromatica RCB]
          Length = 238

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +       +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPSQRQPDQLRTVRITRNFTRHAEGSVLIEMGDTRVLCTASV----EENVPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S   A   ++ G      RL  RA+  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL +A             P+   VA I++G+ K       +
Sbjct: 117 DVLQADGGTRCASITGAWVALYEACDKLVQAGKLPANPVRDHVAAISVGIYKGAP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T +G
Sbjct: 173 LDLDYPEDSDCDTDMNVVMTGAG 195


>gi|116618799|ref|YP_819170.1| RNA-binding protein [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097646|gb|ABJ62797.1| RNA binding protein (S1 domain) [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 127

 Score = 38.1 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  KG++  +  +GAFV       GL+HIS+  +  V   +  +K G  V + ++D +
Sbjct: 5   VGQKLKGRITGIQPYGAFVSLDDHTQGLIHISECKSGIVRDLNGELKVGKEVNIVIMDIE 64

Query: 679 D-RGKIKLSMK 688
              GKI LS++
Sbjct: 65  QYNGKISLSLR 75


>gi|261749410|ref|YP_003257095.1| 30S ribosomal protein S1 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497502|gb|ACX83952.1| 30S ribosomal protein S1 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 606

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
           NK+ KG+V  + D+GAFV      + L+HIS++S +  ++ T D V+ GD +   +L   
Sbjct: 318 NKV-KGKVSVLADYGAFVEIIPGVEALLHISEMSWSYDLSSTQDFVQIGDEIEAVILTI- 375

Query: 679 DRGKIKLSMKV 689
           DR + K+S+ V
Sbjct: 376 DRQERKMSLSV 386


>gi|120404179|ref|YP_954008.1| RNA-binding S1 domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956997|gb|ABM14002.1| RNA binding S1 domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 785

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +V  I +G V  V  FGAFV     +DGLVH+S ++   ++   +VV+ G
Sbjct: 660 KVGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYISDPHEVVRSG 709


>gi|146318426|ref|YP_001198138.1| ribosomal protein S1-like DNA-binding protein [Streptococcus suis
           05ZYH33]
 gi|145689232|gb|ABP89738.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus suis 05ZYH33]
          Length = 43

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           +C   DGLVHISQ+S +RV    D +  G  V VK L
Sbjct: 6   YCQVFDGLVHISQISHKRVENPKDALSVGQEVTVKFL 42


>gi|326797277|ref|YP_004315097.1| ribonuclease PH [Marinomonas mediterranea MMB-1]
 gi|326548041|gb|ADZ93261.1| Ribonuclease PH [Marinomonas mediterranea MMB-1]
          Length = 241

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +       +   GS L   GDT+ I   T+ +         L G  +
Sbjct: 1   MRPSGRAADQLRPMKFTRNFTKHAEGSVLIECGDTKVICTATVVS----GVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM------GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 Y  LP +T   SRM      G    R +   RL  R++   +        T+ I
Sbjct: 57  GWITAEYGMLPRSTH--SRMDREAARGKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITI 114

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G  +AL DA             PI   +A I++G+ K      
Sbjct: 115 DCDVIQADGGTRTASISGGFVALADAVKTLVEQKKLKENPIVSQIAAISVGVYKG----T 170

Query: 475 ILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  V   D  G   +Q   +     +  M+  L  A++G   I+ 
Sbjct: 171 PVLDLDYPEDSNAETDMNVIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIME 230

Query: 534 EMSKVL 539
              +VL
Sbjct: 231 MQRQVL 236


>gi|262341079|ref|YP_003283934.1| 30S ribosomal protein S1 [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272416|gb|ACY40324.1| 30S ribosomal protein S1 [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 605

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+V  + D+GAFV      + L+HIS++S +  ++ T D V+ GD +   +L  D    
Sbjct: 322 KGKVTVLADYGAFVEIIPGVEALLHISEMSWSTDLSSTQDFVQIGDELEAIILTIDRQER 381

Query: 682 KIKLSMKVVDQN 693
           K+ LS+K + Q+
Sbjct: 382 KMSLSVKQLTQD 393


>gi|187779448|ref|ZP_02995921.1| hypothetical protein CLOSPO_03044 [Clostridium sporogenes ATCC
           15579]
 gi|187773073|gb|EDU36875.1| hypothetical protein CLOSPO_03044 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score = 38.1 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 214 VIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRC-------- 265
           ++++I+   K+   E I+ D KDF+K+++E+S M +  L  +C   E  +          
Sbjct: 44  LLQSIAGFNKLNEGE-IIYDGKDFNKVKDEISMMTQRPLLFNCSAGENIIMGLKFRKTPK 102

Query: 266 KQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
           K ID   +K + YF+        G+ +S  E  +  ++RTV+L+  V
Sbjct: 103 KTIDARFEKYIKYFNINEILNKNGKKLSGGETQKVALLRTVILESDV 149


>gi|15828822|ref|NP_326182.1| ribonuclease II [Mycoplasma pulmonis UAB CTIP]
 gi|20139343|sp|Q98QL0|RNR_MYCPU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
           protein homolog
 gi|14089765|emb|CAC13524.1| VACB-LIKE (Shigella flexneri) RIBONUCLEASE II [Mycoplasma pulmonis]
          Length = 725

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 598 SSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           SS  E+EA   + R I D+ +       + K  K Q+V ++ FG FV F     GL+HIS
Sbjct: 583 SSKKEVEAV-SIERQINDIKKAEYYESKIGKSLKAQIVSILSFGMFVEFEDKVSGLIHIS 641

Query: 651 QLSTERVAKTSD 662
            L  E    + D
Sbjct: 642 NLLGEDFQVSED 653


>gi|295667623|ref|XP_002794361.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb01]
 gi|226286467|gb|EEH42033.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb01]
          Length = 1815

 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V  V +FGAF+   G  +  GL H ++++ ++V     + ++GD V  K++  D
Sbjct: 1326 QIVTGRVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKIVKID 1385

Query: 679  -DRGKIKLSMK 688
             D+ +I L +K
Sbjct: 1386 HDKERISLGLK 1396


>gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
           thaliana]
          Length = 1111

 Score = 37.7 bits (86), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           V  +  G++ +V  FG F+        GL HISQLS +R+       K G++V  K+L  
Sbjct: 649 VGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKL 708

Query: 678 DDRGK-IKLSMK 688
           D+  K I L MK
Sbjct: 709 DEEKKRISLGMK 720


>gi|302817215|ref|XP_002990284.1| hypothetical protein SELMODRAFT_40704 [Selaginella moellendorffii]
 gi|300141993|gb|EFJ08699.1| hypothetical protein SELMODRAFT_40704 [Selaginella moellendorffii]
          Length = 863

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +K+  G++  +M FGAFV      DGL+HIS+L    V    DVV+ G  V V++L+ D 
Sbjct: 34  DKVLTGRIKSIMTFGAFVDLGARVDGLLHISKLGEGFVKAVEDVVQVGQEVQVQILEADL 93

Query: 680 RGKIKLSMKVVDQNTGKP 697
           + + ++ +K+ D  T KP
Sbjct: 94  QNR-RVKLKLYDP-TPKP 109


>gi|58425360|gb|AAW74397.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 305

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT  +   ++    + +  + L G    
Sbjct: 69  RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASV----ENRVPNFLRGKGEG 124

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 125 WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 184

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 185 VLQADGGTRTAAITGAYVALADA 207


>gi|294667389|ref|ZP_06732607.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292602830|gb|EFF46263.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 241

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|293363660|ref|ZP_06610410.1| S1 RNA binding domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552767|gb|EFF41527.1| S1 RNA binding domain protein [Mycoplasma alligatoris A21JP2]
          Length = 698

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 10/74 (13%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG-LVHISQLSTERVAKTSDVVKEGD 668
           ++ I D+ +VN+ Y+G+++ + DFG F+ F G +D   VH S+ + + V         G 
Sbjct: 627 LKDINDL-KVNETYEGRILNITDFGIFI-FIGIKDSVFVHKSKYNNQEVLL-------GK 677

Query: 669 TVWVKLLDFDDRGK 682
            V VK+L+ D   K
Sbjct: 678 DVKVKILNIDKDNK 691


>gi|298491699|ref|YP_003721876.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
 gi|298233617|gb|ADI64753.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
          Length = 301

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G +  +  FG FV   G    L+HI Q+S + +     V + G  +   ++D 
Sbjct: 197 EVGQLVEGTITGIKPFGVFVDLEGV-SALLHIKQVSQKFIESLEKVFQIGQQIKAVIIDL 255

Query: 678 DD-RGKIKLSMKVVDQNTGKPI 698
           D  +G++ +S +V++   G+ +
Sbjct: 256 DQGKGRVAISTRVLENFAGEVV 277


>gi|190571429|ref|YP_001975787.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018827|ref|ZP_03334635.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357701|emb|CAQ55150.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995778|gb|EEB56418.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 550

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDG 645
           G + ++   + E   A E I+ +  + E   + +G++  +  +GAFV        G  DG
Sbjct: 191 GNIVVSRKLVLEKLHAGEKIKFLESLNE-GDVVEGKIKSITHYGAFVGIHESDTVGVIDG 249

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           L+HI+ +S   V+  S +   G  +  K++  D + GKI L +K +  N
Sbjct: 250 LLHITDISWSNVSHPSAIFSYGQHIKTKIIKIDRENGKISLGVKQLGDN 298


>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 291

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV--TLGTREDEQYVDSLSG 368
           ++R+DGR    +R + AQ+     + GSS    G+T  I +V      R  E    +  G
Sbjct: 13  RLRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREG 72

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA---RRAIHPVLPQTAQFPY-TLR 424
              +  +    F      + S  G    R+     LA   R A  P L  T  +P+ T+ 
Sbjct: 73  AVVSVAVNVAGFSGVDRKKKSATGGGGDRQAST-DLAFALRDAFQPHL-HTHIYPHSTIS 130

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 131 LHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172


>gi|291450180|ref|ZP_06589570.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|291353129|gb|EFE80031.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
          Length = 252

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G VV+++ FG  V       GL+H+S+L     A    +V EG+ + VK+ + D +R
Sbjct: 179 VLTGTVVRILPFGVLVRLAPDVVGLLHLSELGGGPSATPGRLVAEGEPITVKVAEVDLER 238

Query: 681 GKIKL 685
            +++L
Sbjct: 239 HRVRL 243


>gi|240255326|ref|NP_187803.4| RNA binding [Arabidopsis thaliana]
 gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana]
          Length = 1896

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 619  VNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  +  G++ +V  FG F+        GL HISQLS +R+       K G++V  K+L  
Sbjct: 1434 VGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKL 1493

Query: 678  DDRGK-IKLSMK 688
            D+  K I L MK
Sbjct: 1494 DEEKKRISLGMK 1505


>gi|240102556|ref|YP_002958865.1| DNA-directed RNA polymerase subunit E' [Thermococcus gammatolerans
           EJ3]
 gi|239910110|gb|ACS33001.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Thermococcus
           gammatolerans EJ3]
          Length = 186

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 12/70 (17%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           P ++++ +G+V+ V  +GAFV   G  DGLVHISQL  + V            +T  ++K
Sbjct: 79  PFMHEVVEGEVIDVAPYGAFVR-IGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILK 137

Query: 666 EGDTVWVKLL 675
            GD V  +++
Sbjct: 138 LGDEVRARVI 147


>gi|302755991|ref|XP_002961419.1| hypothetical protein SELMODRAFT_60716 [Selaginella moellendorffii]
 gi|300170078|gb|EFJ36679.1| hypothetical protein SELMODRAFT_60716 [Selaginella moellendorffii]
          Length = 877

 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +K+  G++  +M FGAFV      DGL+HIS+L    V    DVV+ G  V V++L+ D 
Sbjct: 34  DKVLTGRIKSIMTFGAFVDLGARVDGLLHISKLGEGFVKAVEDVVQVGQEVQVQILEADL 93

Query: 680 RGKIKLSMKVVDQNTGKP 697
           + + ++ +K+ D  T KP
Sbjct: 94  QNR-RVKLKLYDP-TPKP 109


>gi|213024775|ref|ZP_03339222.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 106

 Score = 37.7 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLEEEMSQMIKEDLRV 254
           +L A++FGH + + VI+AI+ L K   K     +P  ++      L   ++ + +  L  
Sbjct: 1   MLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVN----DALNARVAALAESRLSD 56

Query: 255 SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+  VVR
Sbjct: 57  AYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVR 106


>gi|78049070|ref|YP_365245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927895|ref|ZP_08189119.1| RNAse PH [Xanthomonas perforans 91-118]
 gi|123584287|sp|Q3BPR8|RNPH_XANC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78037500|emb|CAJ25245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541735|gb|EGD13253.1| RNAse PH [Xanthomonas perforans 91-118]
          Length = 241

 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
          Length = 220

 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 35/170 (20%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LGTREDEQYVDSLSGTQRNDFMMHYN 379
           +R I+ ++ LL R+ GS++F++GDT  IV V   L TR  +   D      R    + Y 
Sbjct: 12  LRPINCEINLLSRSDGSTMFMQGDTTIIVGVNGPLETRSQKMAYD------RASIEVTYT 65

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-------FPYTLRIVS--EIT 430
            L                  G  ++  R I   + +T +        P T+  ++  E+ 
Sbjct: 66  PLK-----------------GPAKIDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQ 108

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +S G  + A +  S LAL+++G+ +   +A ++  + K+    II  D S
Sbjct: 109 DSGGLLACA-INASCLALINSGLSLKFTIAAVSCMIEKETGQVIIDPDSS 157


>gi|126724518|ref|ZP_01740361.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
 gi|126705682|gb|EBA04772.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
          Length = 235

 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 30/175 (17%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +RD+  +  + +   GS L   GDT  +   +L    +      L  +  
Sbjct: 1   MRPSGRELNQMRDVVIETNVTRHAEGSCLIKMGDTHVLCTASL----EPGVPRFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG---------RLARRAIHPVLPQTAQFPYT 422
                 Y  LP AT   +RM    RRE  +G         RL  R++   + + A     
Sbjct: 57  GWVTAEYGMLPRATN--TRM----RREAKNGQSGRTQEIQRLIGRSLRACIDRVALGERQ 110

Query: 423 LRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGL 466
           + I  ++ ++DG +  A++ G  +A       LM AG     PI   +A ++ G+
Sbjct: 111 ITIDCDVIQADGGTRCASITGGWVALRLAVNRLMKAGEVKTDPIMDHIAAVSCGI 165


>gi|242057851|ref|XP_002458071.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
 gi|241930046|gb|EES03191.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
          Length = 426

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + +G V K+  +GA V   G  R GL+HIS ++   V   SD++K  D V V ++  +  
Sbjct: 289 LLQGTVRKIFPYGAQVRIAGTNRSGLLHISNITRGNVLSVSDILKIDDEVKVIVIKSNVP 348

Query: 681 GKIKLSMKVVDQNTG 695
            KI LS   ++   G
Sbjct: 349 DKIALSTADLESAPG 363


>gi|322824018|gb|EFZ29565.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 353

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           ++ I   Q+ +++G GG  I+ +   TGA V I D  +V+I   S  ++ AA E +++I 
Sbjct: 73  VVQITQVQVGHIVGRGGATIKELQSTTGASVEIIDGPSVRITGDSEEKVLAALERVQAIV 132

Query: 615 DVPEVNKIYKGQV 627
              E N  Y+G V
Sbjct: 133 ACQE-NPEYEGPV 144


>gi|294627116|ref|ZP_06705704.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325918115|ref|ZP_08180270.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325922286|ref|ZP_08184067.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
 gi|292598549|gb|EFF42698.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325535661|gb|EGD07502.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325547239|gb|EGD18312.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
          Length = 241

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|227432139|ref|ZP_03914149.1| RNA binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352100|gb|EEJ42316.1| RNA binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 153

 Score = 37.7 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  KG++  +  +GAFV       GL+HIS+  +  V   +  +K G  V + ++D +
Sbjct: 31  VGQKLKGRITGIQPYGAFVSLDDHTQGLIHISECKSGIVRDLNGELKVGKEVNIVIMDIE 90

Query: 679 D-RGKIKLSMK 688
              GKI LS++
Sbjct: 91  QYNGKISLSLR 101


>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
          Length = 292

 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV--TLGTREDEQYVDSLSG 368
           ++R+DGR    +R + AQ+     + GSS    G+T  I +V      R  E    +  G
Sbjct: 13  RLRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREG 72

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA---RRAIHPVLPQTAQFPY-TLR 424
              +  +    F      + S  G    R+     LA   R A  P L  T  +P+ T+ 
Sbjct: 73  AVVSVAVNVAGFSGVDRKKKSATGGGGDRQAST-DLAFALRDAFQPHL-HTHIYPHSTIS 130

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 131 LHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172


>gi|297687318|ref|XP_002821182.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Pongo abelii]
          Length = 1788

 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 650 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRM 709

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 710 LLSLRLSDCGLG 721


>gi|297301793|ref|XP_001105950.2| PREDICTED: protein RRP5 homolog [Macaca mulatta]
          Length = 1858

 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ + D ++ ++
Sbjct: 721 GFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRM 780

Query: 684 KLSMKVVDQNTG 695
            LS+++ D   G
Sbjct: 781 LLSLRLSDCALG 792


>gi|313884724|ref|ZP_07818480.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620092|gb|EFR31525.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 136

 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G +  + D+G FV     + GLVHIS+     V+   +  K G  V V ++D D
Sbjct: 7   IGDVLTGTISGIQDYGVFVQLDETKQGLVHISECRHGFVSNLEEEFKLGQEVKVMIIDID 66

Query: 679 DRG-KIKLSMKVVDQNTGKPI 698
           +   ++ LS++V+      P 
Sbjct: 67  EYTQQVSLSIRVLHSLNTPPF 87


>gi|322436088|ref|YP_004218300.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
 gi|321163815|gb|ADW69520.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
          Length = 245

 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 39/210 (18%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R +  +R      G +    GS L   G+T+ +   T+ T         + G  RN
Sbjct: 7   RPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIET--------GVPGWMRN 58

Query: 373 D----FMMHYNFLPCATGEVSRMGAPSRREIGH--------GRLARRAIHPVLPQTAQFP 420
                    Y  LP AT  ++R  +P   E G          RL  R++  ++   A   
Sbjct: 59  SGKGWVTAEYGMLPRAT--LTR--SPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGE 114

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKD 469
            T+ +  ++ ++DG +  A + G+S+A       L+ AG     P+ + +A  ++G+V D
Sbjct: 115 RTIILDCDVLQADGGTRTAAITGASVALAIALGKLVQAGTLKASPLKQMIAATSVGIV-D 173

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G+  +   D++ +ED    +D  V    SG
Sbjct: 174 GNTLL---DLAYEEDSRATVDMNVVMLASG 200


>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
          Length = 291

 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV--TLGTREDEQYVDSLSG 368
           ++R+DGR    +R + AQ+     + GSS    G+T  I +V      R  E    +  G
Sbjct: 13  RLRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREG 72

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA---RRAIHPVLPQTAQFPY-TLR 424
              +  +    F      + S  G    R+     LA   R A  P L  T  +P+ T+ 
Sbjct: 73  AVVSVAVNVAGFSGVDRKKKSATGGGGDRQAST-DLAFALRDAFQPHL-HTHIYPHSTIS 130

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 131 LHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172


>gi|320100258|ref|YP_004175850.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Desulfurococcus mucosus DSM 2162]
 gi|319752610|gb|ADV64368.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Desulfurococcus mucosus DSM 2162]
          Length = 264

 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++P++ +     V ++ D+GA+V     G R   +  S+++T+ V    DV++EG+ + V
Sbjct: 6   ELPDIGEYVVATVREIYDYGAYVTLDEYGDRKAFLPWSEIATKWVKNIRDVIREGEKIVV 65

Query: 673 KLLDFDDRGK-IKLSMKVV 690
           K++  D   K + +S+K V
Sbjct: 66  KVIRVDRAKKEVDVSLKKV 84


>gi|6690127|gb|AAF23994.1| RpsA [Pseudomonas aeruginosa]
          Length = 267

 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S +S   V + +    K+GD +   +L  D +R +
Sbjct: 77  GSIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERER 136

Query: 683 IKLSMK 688
           I L +K
Sbjct: 137 ISLGIK 142


>gi|41615160|ref|NP_963658.1| DNA-directed RNA polymerase subunit E' [Nanoarchaeum equitans
           Kin4-M]
 gi|40068884|gb|AAR39219.1| NEQ370 [Nanoarchaeum equitans Kin4-M]
          Length = 181

 Score = 37.7 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +T  P + ++  G +  ++DFGA+V+  G  DGL+HISQ+  + V  + D V  G   
Sbjct: 74  KVLTWKPILKEVTLGIISNIVDFGAYVNI-GPTDGLIHISQIMDDIVDYSKDKVLAGRKT 132

Query: 671 WVKLLDFDDRGKIKL 685
             K+L  +D  K K+
Sbjct: 133 -KKILKIEDIVKAKI 146


>gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 619  VNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  +  G++ +V  FG F+        GL HISQLS +R+       K G++V  K+L  
Sbjct: 1303 VGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKL 1362

Query: 678  DDRGK-IKLSMK 688
            D+  K I L MK
Sbjct: 1363 DEEKKRISLGMK 1374


>gi|326803704|ref|YP_004321522.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650568|gb|AEA00751.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 136

 Score = 37.7 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G V  +  +G F+       GLVHIS++    V    +    GD V VK++D D
Sbjct: 9   IGDILNGTVTGIQSYGLFIKLNPHCHGLVHISEVDHGFVTNLEERFSIGDQVKVKIIDID 68

Query: 679 D-RGKIKLSMKVV 690
           +   KI LS++ +
Sbjct: 69  EYTKKISLSIRAL 81


>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
 gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
          Length = 263

 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR     R    + G +    GS+    G+T+ IV V  G RE ++ +      + 
Sbjct: 40  TRSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSV-FGPRESKKAMMYSDKGKL 98

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIG---HGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           N  + +  F     G+ S       +E     H  L    +    P+T     T+ + + 
Sbjct: 99  NCNVSYTTFATTVHGQGS-----DNKEFSTMLHKALEGAVMLETFPKT-----TVDVFAL 148

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           + ES GS     +  +SLAL DAG+ +   VAG+++  +  G + II
Sbjct: 149 VLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCL--GRNLII 193


>gi|164660528|ref|XP_001731387.1| hypothetical protein MGL_1570 [Malassezia globosa CBS 7966]
 gi|159105287|gb|EDP44173.1| hypothetical protein MGL_1570 [Malassezia globosa CBS 7966]
          Length = 974

 Score = 37.7 bits (86), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           E  LQL E   RV +  + P  +R  VIG GGK IR I ++TG +++I    T + A+  
Sbjct: 18  ELTLQLAE---RVTLTMLVPASLRAFVIGAGGKNIRAITDETGVRIHIPPRSTDESAAKE 74

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKV-MDFGAFVHFCGARDGLVHISQLSTERVA 658
            A       M  S  D   +     G+ +++ +D   F     A D    I  +  ER +
Sbjct: 75  AA-------MSSSDADADALGDPLLGEQIEITIDGDTF----NAHDAQARIQDIVAERTS 123

Query: 659 KTSDVVKEGDTVWVKLL 675
           K +  +   +  W   +
Sbjct: 124 KITQRLTHVEPAWFPFI 140


>gi|325579215|ref|ZP_08149171.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159450|gb|EGC71584.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 238

 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 38/231 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   D S+     GQ+   +T  Y       
Sbjct: 12  RPIKI-TRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVTAEY------- 63

Query: 71  GKIPGGYLRRESRPTEN------EILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDL 122
           G +P     R  R           + I R+I RS+R +       E  + +  +V+Q D 
Sbjct: 64  GMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQAD- 122

Query: 123 ESSPHVVSMVAASAALM--LSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
                  S+  A+ AL   ++GL         P +G V    V  + G+ V +    ED 
Sbjct: 123 -GGTRTASITGAAVALCDAINGLIANGTLKTNPIKGLVAAISVGIVEGEAVCDLEYVEDS 181

Query: 172 GS-LDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIEA 217
            +  D+ V   +D   M+E+    E    S + +L  +      C+ +  A
Sbjct: 182 AAETDMNVVMMEDG-RMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAA 231


>gi|167041245|gb|ABZ06001.1| putative S1 RNA binding domain protein [uncultured marine
           microorganism HF4000_005D21]
 gi|167045749|gb|ABZ10395.1| putative S1 RNA binding domain protein [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 571

 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           AK+   ++GT KI   SL   +   +  + + D  EV K Y   +  V D+G F      
Sbjct: 254 AKIIKIEEGTKKI---SLGVKQLTEDPYKKVIDSYEVGKNYTAIITNVQDYGCFAKLEEG 310

Query: 643 RDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +GL+H S+LS T++      V+     + V++L+ D ++ ++ LS K
Sbjct: 311 LEGLIHQSELSWTKKNIHPGKVLSTSQKIQVQILEKDMEKRRLSLSYK 358


>gi|146304564|ref|YP_001191880.1| translation initiation factor IF-2 subunit alpha [Metallosphaera
           sedula DSM 5348]
 gi|145702814|gb|ABP95956.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Metallosphaera sedula DSM 5348]
          Length = 256

 Score = 37.7 bits (86), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           MI +   +P    I    V +V D+G++V     G     +  S++ST  V    DVVKE
Sbjct: 1   MIYNRYPLPREGDILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEISTRWVKNIRDVVKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  + VK++  D  +G + +S+K V+ +
Sbjct: 61  GRKIIVKVIRVDRKKGSVDVSLKKVNDD 88


>gi|15896453|ref|NP_349802.1| hypothetical protein CA_C3206 [Clostridium acetobutylicum ATCC 824]
 gi|15026277|gb|AAK81142.1|AE007816_6 Ribosomal protein S1 domain family protein [Clostridium
           acetobutylicum ATCC 824]
 gi|325510611|gb|ADZ22247.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 135

 Score = 37.7 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G +V + +FGAFV   G + GLVHIS+++   V    D +KE D V VK+L  DD G
Sbjct: 8   ILTGTIVNITNFGAFVEVDG-KTGLVHISEVADSFVKDIHDHLKEKDKVKVKVLSVDDNG 66

Query: 682 KIKLSMK--VVDQNTGKPI 698
           KI LS+K  +  + + KPI
Sbjct: 67  KISLSIKQAIDHKKSVKPI 85


>gi|326803413|ref|YP_004321231.1| Tex-like protein N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650512|gb|AEA00695.1| Tex-like protein N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 716

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +G V  V+DFGAFV     +DGLVHIS++S
Sbjct: 648 QGTVRNVVDFGAFVDIGVKQDGLVHISKMS 677


>gi|303286689|ref|XP_003062634.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456151|gb|EEH53453.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 314

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           P+  I+  PP  +  VIG GG+ I+G+  Q+GA V ++ D
Sbjct: 195 PKTTIVPCPPSLVGRVIGKGGETIKGLQAQSGAHVQVNQD 234


>gi|254428098|ref|ZP_05041805.1| ribonuclease PH [Alcanivorax sp. DG881]
 gi|196194267|gb|EDX89226.1| ribonuclease PH [Alcanivorax sp. DG881]
          Length = 238

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R++S          GS L   G T+ +   ++    +E     L G  +
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGGTKVLCTASV----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T    G  +  G    R +   RL  R++   +   A    T+ +  
Sbjct: 57  GWLTAEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA 451
           ++ ++DG +  A++ G+ +AL+DA
Sbjct: 117 DVLQADGGTRTASISGACVALVDA 140


>gi|15920582|ref|NP_376251.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
 gi|15621365|dbj|BAB65360.1| 183aa long hypothetical DNA-directed RNA polymerase subunit E
           [Sulfolobus tokodaii str. 7]
          Length = 183

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 16/88 (18%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVV 664
           VP + ++ +G+V +V ++G +V+  G  DGL HISQ++ + +            ++  ++
Sbjct: 78  VPIIQEVVEGEVNQVDNYGVYVN-IGPVDGLAHISQITDDNLKFDQNRGILIGERSKKII 136

Query: 665 KEGDTVWVKLLDFDDRG----KIKLSMK 688
           ++GD V  +++     G    +I L+MK
Sbjct: 137 QKGDRVRARIISVSTSGGRMPRIALTMK 164


>gi|78185204|ref|YP_377639.1| RNA binding S1 [Synechococcus sp. CC9902]
 gi|78169498|gb|ABB26595.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
          Length = 412

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G V  V  +G F+   G   GL+H S ++   +    +V  +GD V   + D 
Sbjct: 303 EVGQLVEGLVASVKPYGLFIDLGGI-SGLLHQSSITNGSLRSIREVFDQGDRVSALITDL 361

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 362 DPGRGRIGLNTALLEGPPGELLI 384


>gi|326403855|ref|YP_004283937.1| ribonuclease PH [Acidiphilium multivorum AIU301]
 gi|325050717|dbj|BAJ81055.1| ribonuclease PH [Acidiphilium multivorum AIU301]
          Length = 243

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +    G  +   GS+L   G T+ +   ++    + +    L G  + 
Sbjct: 6   RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASV----EGRVPGFLRGAGQG 61

Query: 373 DFMMHYNFLPCATG-----EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y  LP AT      E +R G  S R     RL  R++  V+ +TA    T+ +  
Sbjct: 62  WVTAEYGMLPRATHTRGDREAAR-GKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDC 120

Query: 428 EITESDGSSSMATVCGSSLALM-------DAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL         A V    P+   VA ++ G+   G   ++ 
Sbjct: 121 DVLNADGGTRCAAITGAWVALALAIRTLRKANVIATDPLIGQVAAVSCGVF--GGVPVLD 178

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D + D +     +F + GT  GI  +Q   +     E      L  A++G   +     
Sbjct: 179 LDYAEDSNAEADANFVLTGT-GGIVEIQATAERATFEEATFGTLLGLARKGTAELFTAQR 237

Query: 537 KVL 539
             L
Sbjct: 238 AAL 240


>gi|218441837|ref|YP_002380166.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
 gi|218174565|gb|ACK73298.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
          Length = 718

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +E I  I+D+ E   + +G +  V++FGAFV     +DGLVHISQ++
Sbjct: 634 QEGITEISDLKE-GMLLEGIITNVVNFGAFVDVGVHQDGLVHISQIA 679


>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
          Length = 219

 Score = 37.7 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 20/158 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +  +R +   + LL +  GS+ F  GD+  +  V  G R      D     +++
Sbjct: 5   RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAV-YGPR------DVPLSREKH 57

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIG--HGRLARRAIHPVLPQTAQFPYT-LRIVSEI 429
           D          +T EV+   AP   +       L    ++  L     FP + +R+V + 
Sbjct: 58  DR---------STVEVAWHSAPDNEQGAALQSHLTEFVVN-ALASIHDFPRSAIRVVIQE 107

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
             +DG      +  + LALMDAG+ ++   A  +  +V
Sbjct: 108 LNNDGGMLACAINATCLALMDAGISLTAMFAAASCAVV 145


>gi|294949717|ref|XP_002786310.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
 gi|239900520|gb|EER18106.1| eukaryotic initiation factor-2 alpha subunit, putative [Perkinsus
           marinus ATCC 50983]
          Length = 335

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEG--DTVWV 672
           PE+++     V +V D  A+V  C   D  G+V +S+LS  R+     ++K G  DT  V
Sbjct: 18  PEIDQCVVALVKQVTDVAAYVSLCEYDDMEGMVQLSELSKRRIRSIPKLIKVGRYDTFMV 77

Query: 673 KLLDFDDRGKIKLSMKVV 690
             +D  ++G I LS K V
Sbjct: 78  LRVD-KEKGYIDLSKKRV 94


>gi|320165866|gb|EFW42765.1| hypothetical protein CAOG_07897 [Capsaspora owczarzaki ATCC 30864]
          Length = 556

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK---IASSSLA 601
           Q G+  P  +  ++P   I  +IG  G+ IR I  QTG +V    DG      +  S  A
Sbjct: 91  QPGQSAPATDAFSVPSHTIGLIIGRQGETIRRIESQTGVRVQCAQDGGSNDRVVTISGPA 150

Query: 602 E-IEAAREMIRSI 613
           E IE A+ MIR I
Sbjct: 151 EGIELAKSMIREI 163


>gi|88807700|ref|ZP_01123212.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
 gi|88788914|gb|EAR20069.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
          Length = 430

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G V  V  +G F+   G   GL+H S ++   +    +V   GD+V   + + 
Sbjct: 321 EVGQLVEGHVAAVKPYGLFIDLGGI-SGLLHQSMITGGSLRSIREVFDHGDSVKALITEL 379

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 380 DPGRGRIALNTAMLEGQPGELLI 402


>gi|56808640|ref|ZP_00366366.1| COG1098: Predicted RNA binding protein (contains ribosomal protein
           S1 domain) [Streptococcus pyogenes M49 591]
 gi|209559760|ref|YP_002286232.1| hypothetical protein Spy49_1252c [Streptococcus pyogenes NZ131]
 gi|209540961|gb|ACI61537.1| Putative polyribonucleotide nucleotidyltransferase [Streptococcus
           pyogenes NZ131]
          Length = 125

 Score = 37.7 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI- 683
           G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++D D+  K  
Sbjct: 9   GTITGIKPYGAFVALDNGTTGLIHISEIKTGFIDDIDQLLAIGNQVLVQVIDIDEYSKKP 68

Query: 684 KLSMKVVDQ 692
            LSM+ + +
Sbjct: 69  SLSMRTLAE 77


>gi|330720370|gb|EGG98703.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC2047]
          Length = 236

 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLDFD-DRGK 682
           G +  + DFG F+   G  DGLVH+S +S     + +    K+GD +   +L  D +R +
Sbjct: 46  GTIKSITDFGIFLGLEGGIDGLVHLSDISWNEAGEEAVRAYKKGDEIETVILSIDPERER 105

Query: 683 IKLSMK 688
           I L +K
Sbjct: 106 ISLGVK 111


>gi|15675497|ref|NP_269671.1| hypothetical protein SPy_1619 [Streptococcus pyogenes M1 GAS]
 gi|19746545|ref|NP_607681.1| hypothetical protein spyM18_1628 [Streptococcus pyogenes MGAS8232]
 gi|21910900|ref|NP_665168.1| hypothetical protein SpyM3_1364 [Streptococcus pyogenes MGAS315]
 gi|28895410|ref|NP_801760.1| hypothetical protein SPs0498 [Streptococcus pyogenes SSI-1]
 gi|50914722|ref|YP_060694.1| hypothetical protein M6_Spy1376 [Streptococcus pyogenes MGAS10394]
 gi|71904033|ref|YP_280836.1| hypothetical protein M28_Spy1371 [Streptococcus pyogenes MGAS6180]
 gi|71911143|ref|YP_282693.1| hypothetical protein M5005_Spy_1330 [Streptococcus pyogenes
           MGAS5005]
 gi|139473332|ref|YP_001128047.1| hypothetical protein SpyM50461 [Streptococcus pyogenes str.
           Manfredo]
 gi|13622693|gb|AAK34392.1| putative polyribonucleotide nucleotidyltransferase (general stress
           protein) [Streptococcus pyogenes M1 GAS]
 gi|19748756|gb|AAL98180.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           pyogenes MGAS8232]
 gi|21905106|gb|AAM79971.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           pyogenes MGAS315]
 gi|28810656|dbj|BAC63593.1| putative polyribonucleotide nucleotidyltransferase (general stress
           protein) [Streptococcus pyogenes SSI-1]
 gi|50903796|gb|AAT87511.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS10394]
 gi|71803128|gb|AAX72481.1| s1-type RNA-binding domain [Streptococcus pyogenes MGAS6180]
 gi|71853925|gb|AAZ51948.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS5005]
 gi|134271578|emb|CAM29803.1| putative S1 RNA binding domain protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 125

 Score = 37.7 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI- 683
           G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++D D+  K  
Sbjct: 9   GTITGIKPYGAFVALENGTTGLIHISEIKTGFIDDIDQLLAIGNQVLVQVIDIDEYSKKP 68

Query: 684 KLSMKVVDQ 692
            LSM+ + +
Sbjct: 69  SLSMRTLAE 77


>gi|108800368|ref|YP_640565.1| RNA binding S1 [Mycobacterium sp. MCS]
 gi|119869497|ref|YP_939449.1| RNA-binding S1 domain-containing protein [Mycobacterium sp. KMS]
 gi|126435991|ref|YP_001071682.1| RNA-binding S1 domain-containing protein [Mycobacterium sp. JLS]
 gi|108770787|gb|ABG09509.1| RNA binding S1 [Mycobacterium sp. MCS]
 gi|119695586|gb|ABL92659.1| RNA binding S1 domain protein [Mycobacterium sp. KMS]
 gi|126235791|gb|ABN99191.1| RNA binding S1 domain protein [Mycobacterium sp. JLS]
          Length = 777

 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +V  + +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G
Sbjct: 653 KVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHEVVRSG 702


>gi|153939819|ref|YP_001389595.1| ribonuclease R [Clostridium botulinum F str. Langeland]
 gi|152935715|gb|ABS41213.1| ribonuclease R [Clostridium botulinum F str. Langeland]
 gi|295317691|gb|ADF98068.1| ribonuclease R [Clostridium botulinum F str. 230613]
          Length = 725

 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +       + + Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
 gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
          Length = 308

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 24/187 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  +  R   A++G++    GS+    G+T+ IV V           D     ++N
Sbjct: 43  RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSV----------FDPREIPKQN 92

Query: 373 DF------MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            F           F P A   V +      RE         A++P + +       + + 
Sbjct: 93  KFCELGELFCDLKFSPFAPA-VRKTHQTDARERSMTAALTSALNPSVCRHLFPNLQIDVF 151

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           + + E DGS+    +  + LAL DA VP+   V     G++ D     ++ D + +E+ L
Sbjct: 152 ANVLEDDGSALAVAITAAGLALGDACVPMFDIVTAATAGVLGDR----VVMDPTAEEEAL 207

Query: 487 ---GHMD 490
              GH +
Sbjct: 208 CLAGHTE 214


>gi|294791355|ref|ZP_06756512.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
 gi|294457826|gb|EFG26180.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
          Length = 259

 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 12/148 (8%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R DGR  + +R ++   G  Q   GS L   G T+ +   T          DS  G 
Sbjct: 15  KAIRADGRAVDQLRPVTITRGWTQAPEGSVLIECGQTRVLCTATFSQGVPRWRKDSGLGW 74

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPS-RREIGH-----GRLARRAIHPVLPQTAQFPYTL 423
                   Y  +P AT +  R    S R +IG       RL  R +  ++   A     +
Sbjct: 75  ----VTAEYAMIPRATAD--RTDRESVRGKIGGRTHEISRLIGRVLRGIVDLGALGENMI 128

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA 451
           +I  ++ ++DG +  A++ G+ +AL DA
Sbjct: 129 QIDCDVLQADGGTRTASITGAYVALADA 156


>gi|168182158|ref|ZP_02616822.1| ribonuclease R [Clostridium botulinum Bf]
 gi|237793551|ref|YP_002861103.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
 gi|182674694|gb|EDT86655.1| ribonuclease R [Clostridium botulinum Bf]
 gi|229263406|gb|ACQ54439.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
          Length = 725

 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +       + + Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|148378235|ref|YP_001252776.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
 gi|153931432|ref|YP_001382636.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
 gi|153934693|ref|YP_001386188.1| ribonuclease R [Clostridium botulinum A str. Hall]
 gi|148287719|emb|CAL81784.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
 gi|152927476|gb|ABS32976.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
 gi|152930607|gb|ABS36106.1| ribonuclease R [Clostridium botulinum A str. Hall]
          Length = 725

 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +       + + Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|118618534|ref|YP_906866.1| transcriptional accessory protein Tex [Mycobacterium ulcerans
           Agy99]
 gi|118570644|gb|ABL05395.1| transcriptional accessory protein Tex [Mycobacterium ulcerans
           Agy99]
          Length = 787

 Score = 37.4 bits (85), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLD 676
           +V  + +G V  V  FGAFV     +DGLVH++ ++   V+   +VV+ G       +  
Sbjct: 653 KVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVAAMAERFVSDPHEVVRSGQVVRVKVVDV 712

Query: 677 FDDRGKIKLSMKVVDQ 692
             +R ++ LS+++ D+
Sbjct: 713 DVERQRVGLSLRLNDE 728


>gi|58039735|ref|YP_191699.1| ribonuclease PH [Gluconobacter oxydans 621H]
 gi|58002149|gb|AAW61043.1| Ribonuclease PH [Gluconobacter oxydans 621H]
          Length = 240

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 19/238 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  +  R +S + G  +   GS+L   G T+ +   T+    +++    L    + 
Sbjct: 8   RPSGRAPDENRIVSIETGFARHAEGSALIRVGGTEVLCTATI----EDRVPPFLRNKGQG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    +  A   ++ G      RL  R++   +        T+ +  +
Sbjct: 64  WITAEYGMLPRATHSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLDCD 123

Query: 429 ITESDGSSSMATVCGS----SLALMDA--GVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +  +DG +  A++ G+    SLAL  A     ++  VA ++ GL   G     + D+   
Sbjct: 124 VLNADGGTRCASITGAWVALSLALKKAKRSQALTAQVAAVSCGLTDAG----AVLDLDYV 179

Query: 483 EDHLGHMDFK-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           ED     D   V   D GI  +Q   +     E+     L+ AK G   +    +K L
Sbjct: 180 EDSSAQADTNFVLTADGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKAL 237


>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
           mellifera]
          Length = 270

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R D R +  +R I  + G++ +  GS+    G+T+ +  V      D + + + +G
Sbjct: 33  DFNIRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVF-----DPRELSNRNG 87

Query: 369 -TQRNDFMMHYNFLP--CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP-YTLR 424
              + +    + F P  C   ++ +  A  ++   +  + +RA+ P      +FP + + 
Sbjct: 88  YCSQGEIYCEFKFAPFSCQKRKIHQQDAEEKQ---YSLILQRALEPA----HEFPNFQVD 140

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           + + + ++ GSS  A +  +S AL +AGVP+   V    +G+
Sbjct: 141 VYAMVLDNAGSSLAAAIMAASTALANAGVPMFGLVTASTIGI 182


>gi|88602418|ref|YP_502596.1| translation initiation factor IF-2 subunit alpha [Methanospirillum
           hungatei JF-1]
 gi|88187880|gb|ABD40877.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanospirillum hungatei JF-1]
          Length = 264

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + PE  ++    V  V DF AFV       R+GL+ I++++   +    D ++EG  V  
Sbjct: 5   EWPEQGELVVCSVQNVKDFVAFVTLDEYNNREGLIPIAEVARGWIKYIRDHIREGQKVVC 64

Query: 673 KLLDFD-DRGKIKLSMKVVDQN 693
           K+L+ D  +G I LS+K V+++
Sbjct: 65  KVLNVDPQKGHIDLSLKDVNEH 86


>gi|299116075|emb|CBN74491.1| 30S ribosomal protein S1 [Ectocarpus siliculosus]
          Length = 436

 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R++ R + D+ E   I KG+V  V  +GA+V     RDGL+H+  +         +VV  
Sbjct: 158 RQVTRKLEDLQEGEWI-KGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVAT 216

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            D              I+  +K VD  TGK
Sbjct: 217 KDI-------------IQARVKFVDPVTGK 233


>gi|224282438|ref|ZP_03645760.1| ribonuclease PH [Bifidobacterium bifidum NCIMB 41171]
 gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010]
 gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
 gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010]
 gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
          Length = 254

 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 10/151 (6%)

Query: 307 MLDKK--VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           MLDK   +R DGR  + +R +           GS L   G+T+ +   T          D
Sbjct: 7   MLDKAMVIRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKD 66

Query: 365 SLSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           S  G         Y+ LP AT E     S  G    R     RL  R +  V+   A   
Sbjct: 67  SGLGW----VTAEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGE 122

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDA 451
             ++I  ++ ++DG +  A++ G+ +AL+DA
Sbjct: 123 NQIQIDCDVLQADGGTRTASITGAYVALVDA 153


>gi|21244122|ref|NP_643704.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638175|sp|Q8PH63|RNPH_XANAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21109751|gb|AAM38240.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
          Length = 241

 Score = 37.4 bits (85), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A + G+ +AL DA
Sbjct: 121 VLQADGGTRTAAITGAYVALADA 143


>gi|322804500|emb|CBZ02050.1| 3'-to-5' exoribonuclease RNase R [Clostridium botulinum H04402 065]
          Length = 725

 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +       + + Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|225441563|ref|XP_002276633.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1821

 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +D +G   I S+  + I +A+++   +T +   N +  G +  +++ G FV F G   G 
Sbjct: 642 LDVEGNNFILSAKYSLINSAQQLPLDLTQI-HPNSVVHGYICNIIETGCFVRFLGRLTGF 700

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              +++  ++ A  S+    G +V   +LD + + G+I LS+K
Sbjct: 701 SPRNKVMDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLK 743


>gi|187777180|ref|ZP_02993653.1| hypothetical protein CLOSPO_00726 [Clostridium sporogenes ATCC
           15579]
 gi|187774108|gb|EDU37910.1| hypothetical protein CLOSPO_00726 [Clostridium sporogenes ATCC
           15579]
          Length = 725

 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +       + + Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|330813567|ref|YP_004357806.1| SSU ribosomal protein S1p [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486662|gb|AEA81067.1| SSU ribosomal protein S1p [Candidatus Pelagibacter sp. IMCC9063]
          Length = 565

 Score = 37.4 bits (85), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++N I +G V  +  +G FV      D L+H S++S  +++  +++   GDTV V+++D 
Sbjct: 200 KLNDIVEGNVKAITSYGLFVSIENL-DCLLHSSEVSHLKISNLNEMFSVGDTVKVQIIDI 258

Query: 678 D-DRGKIKLSMKVV 690
           D +  +I LS+K +
Sbjct: 259 DLETKRISLSIKAM 272


>gi|320539880|ref|ZP_08039539.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
 gi|320030066|gb|EFW12086.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
          Length = 238

 Score = 37.4 bits (85), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPVGRAPQHVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   +   A   ++ G      RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYSMLPRSTHSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   VA +++G++ +G+    L
Sbjct: 117 DVLQADGGTRTASITGACVALIDALNALVANGKLKANPMKGLVAAVSVGIL-NGE---AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V   + G
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDG 195


>gi|170756581|ref|YP_001779863.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
 gi|169121793|gb|ACA45629.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
          Length = 725

 Score = 37.4 bits (85), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPEVNKI-------YKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +   +       Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGGEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV-------VVTLGTREDEQYVD 364
           +R+DGR  +  R +   +G+L    GS+ F  G+T+ +         V  G R+DE+ + 
Sbjct: 9   LRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAI- 67

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                        ++    +TGE    G   RR +    + R+A+   +         + 
Sbjct: 68  ---------IKCEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEIN 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           ++ ++ ++DG    A +  + LA+ +AG+P+   +A  + G + DG   + L+
Sbjct: 119 VMIQVLQADGGVRAAAINAAVLAIANAGIPMKDTMAACSAGYL-DGTPLLDLN 170


>gi|168177565|ref|ZP_02612229.1| ribonuclease R [Clostridium botulinum NCTC 2916]
 gi|226947453|ref|YP_002802544.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
 gi|182670398|gb|EDT82372.1| ribonuclease R [Clostridium botulinum NCTC 2916]
 gi|226841831|gb|ACO84497.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
          Length = 725

 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +       + + Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|170761827|ref|YP_001785563.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
 gi|169408816|gb|ACA57227.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
          Length = 725

 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 19/105 (18%)

Query: 593 VKIASSSLAEIE-AAREMIRSITDVPEVNKI-------YKGQVVKVMDFGAFVHFCGARD 644
           V+ AS   +E+E  A+E  R + D+ +   +       Y+G +  V +FG FV      +
Sbjct: 587 VEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIE 646

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           GLVHIS LS +               + ++ + GDTV +K+   D
Sbjct: 647 GLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVD 691


>gi|154346012|ref|XP_001568943.1| exosome complex exonuclease RRP41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 246

 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 23/180 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR     R +    G L    GS     G ++ +     G RE      SL   + 
Sbjct: 13  LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSK-VCASIFGPRE------SLHKQEA 65

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA-------QFPYT-L 423
                H   L      V+     SRR           I   + Q A       Q+P + +
Sbjct: 66  K----HDKVLVTCEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ + DG+  +A +  + LAL+DA V +   V  I++GL+    D  +L D++ DE
Sbjct: 122 HIYIEVLQQDGNEKVACINAACLALVDANVAMRDVVCCISVGLL----DEHMLIDLANDE 177


>gi|291460911|ref|ZP_06025826.2| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380070|gb|EFE87588.1| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 436

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 23/197 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR     R I     +     GS L   G+T+ I   ++     E+    L GT +
Sbjct: 3   LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVS----EKVPPFLRGTGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E ++  A   +  G      RL  RA+   +         + I  
Sbjct: 59  GWVTAEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G  +AL  A             P+   VA I++G +       ++
Sbjct: 119 DVIQADGGTRTTSITGGYIALALAIKKLLKEEILEENPLIANVAAISVGKINSE----LM 174

Query: 477 SDISGDEDHLGHMDFKV 493
            D+   ED    +D  V
Sbjct: 175 VDLKYSEDSAAEVDMNV 191


>gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1]
 gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1]
          Length = 260

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 35/222 (15%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV------VT 353
           A+V  TV      R DGR  + +R I+ +  +     GS L   G T+ I        V 
Sbjct: 4   ARVAATVGPMPSPRSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVP 63

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT-----GEVSRMGAPSRREIGHGRLARRA 408
           L  R+         G +       Y+ LP +T      ++S+ G    R +   RL  R+
Sbjct: 64  LWMRQQ--------GVRGGWLTAEYSMLPYSTLDRKPRDISK-GKLDGRTVEIQRLIGRS 114

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISK 457
           +  V+        TL I  ++ ++DG +  A++ G+ LA       L+DAG     P+  
Sbjct: 115 LRAVVDLMKLGENTLWIDCDVLQADGGTRTASITGAYLATRLAVQRLVDAGKLAENPVLD 174

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            VA ++ G V  G + +   D++  ED    +D  +  T  G
Sbjct: 175 SVAAVSAG-VCGGQELL---DLNYVEDKDAEVDANIVMTGRG 212


>gi|34763588|ref|ZP_00144521.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886731|gb|EAA23871.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 434

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  +  R I     +     GS L   G+T+ I   ++     ++    L GT +
Sbjct: 2   LREDGRKFDEERKIKITKDVNIYAEGSVLIEVGNTKVICTASV----TDKVPSFLRGTGK 57

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     +  G  S R +   RL  RA+   +         + I  
Sbjct: 58  GWVTAEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDC 117

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G  +A       L+D  +    P+   VA I++G +       ++
Sbjct: 118 DVIQADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISNVAAISVGKINSE----LM 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED    +D  V     G
Sbjct: 174 VDLKYSEDFAAEVDMNVIMNKKG 196


>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
           DSM 2374]
 gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
           DSM 2374]
          Length = 265

 Score = 37.4 bits (85), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           ++V +  +I  + +  + ++ K R DGR+ +  RDIS + G++ +  GS+    GDTQ  
Sbjct: 3   KMVDIVPEITKESIINLAVNDK-REDGRELDEYRDISIETGVISKAEGSARVKIGDTQ-- 59

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V+V +  +    + D+         M +   LP A       G PS   I   R+  R I
Sbjct: 60  VIVGIKPQIGAPFPDT---PDLGVLMTNCEMLPMADPTFEP-GPPSEDSIELARVVDRGI 115

Query: 410 H 410
            
Sbjct: 116 R 116


>gi|189184094|ref|YP_001937879.1| 30S ribosomal protein S1 [Orientia tsutsugamushi str. Ikeda]
 gi|189180865|dbj|BAG40645.1| 30S ribosomal protein S1 [Orientia tsutsugamushi str. Ikeda]
          Length = 491

 Score = 37.4 bits (85), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           ++  I  G+V  + ++GAF+      +GL H   L  E++ +     +  G  V  K+LD
Sbjct: 303 QIGDIKVGKVKSIAEYGAFIEVTKDLEGLCHSGHLGWEKINQNPKKSLTIGQEVVFKILD 362

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D +R +I LS+K+   N
Sbjct: 363 IDKERHRISLSLKLCKPN 380


>gi|269115294|ref|YP_003303057.1| hypothetical protein MHO_5200 [Mycoplasma hominis]
 gi|268322919|emb|CAX37654.1| Conserved hypothetical protein, putative RNAbinding protein
           [Mycoplasma hominis ATCC 23114]
          Length = 717

 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKLLDF 677
           +I KGQ+  V DFGAF      ++ L+HI+ +  +    +    DV+  GD V ++++  
Sbjct: 644 QIIKGQIQNVTDFGAFAFIGLKQNVLIHITNMKKKENQFIKHPLDVLNVGDNVNIQIISI 703

Query: 678 D 678
           D
Sbjct: 704 D 704


>gi|11498717|ref|NP_069946.1| DNA-directed RNA polymerase subunit E' [Archaeoglobus fulgidus DSM
           4304]
 gi|2649472|gb|AAB90126.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 189

 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 18/89 (20%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVK 665
           P   ++ +G+V+++++FGAFV   G  D L+H+SQ++ + +            +T  V++
Sbjct: 79  PLHQEVVEGEVIEIVEFGAFVS-IGPFDALLHMSQVTDDYMVFDEKNKRLVGRETKKVLQ 137

Query: 666 EGDTVWVKLLDFD------DRGKIKLSMK 688
           EGD V  +++         ++ KI L+M+
Sbjct: 138 EGDKVRARIVSLSLKEREPEKSKIGLTMR 166


>gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 245

 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQ 361
           R DGR +  +R ++    +L R HGS+ + +GDT+ +  V     GT+++E 
Sbjct: 7   RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN 58


>gi|166713272|ref|ZP_02244479.1| ribonuclease PH [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 241

 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S   A   ++ G      RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +    + G+ +AL DA
Sbjct: 121 VLQADGGTRTTAITGAYVALADA 143


>gi|229188347|ref|ZP_04315396.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
 gi|228595146|gb|EEK52916.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
          Length = 139

 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           GLVHIS+++   V   +D +K GD V VK+++ +  GKI LS+K
Sbjct: 9   GLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIK 52


>gi|218199275|gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group]
          Length = 1848

 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 20/138 (14%)

Query: 571 GKVIRGIVEQ-TGAKVNIDDDGTVK--IASSSLAE----------IEAAREMIRSITDVP 617
           G ++ G+VE+ T A V +  +G  K  I +  LA+          + A + +I   +D+P
Sbjct: 674 GSIVSGVVERLTPAAVVVSVNGFCKGSILNEHLADHRDVEGQNLVLSAKQSLINCASDIP 733

Query: 618 ------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                     ++ G V  +++ G FV F G   G     +     V K S+    G +V 
Sbjct: 734 SEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVR 793

Query: 672 VKLLDFD-DRGKIKLSMK 688
             +L+ + +  ++KLS++
Sbjct: 794 SHILNVNAESARVKLSLQ 811


>gi|170758748|ref|YP_001787339.1| tungstate ABC transporter, ATP-binding protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169405737|gb|ACA54148.1| putative tungstate ABC transporter, ATP-binding protein TupC
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 230

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 214 VIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRC-------- 265
           ++++I+   K+   E I+ D KDF+K+++++S M +  L  +C   E  +          
Sbjct: 44  LLQSIAGFNKLTEGE-IIYDGKDFNKVKDKISMMTQRPLLFNCSTDENIIMGLKFRKTPK 102

Query: 266 KQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
           K +D   +K + YF+        G+ +S  E  +  ++RTV+L+  V
Sbjct: 103 KTVDARFEKYIKYFNINEILNKNGKKLSGGETQKVALLRTVILESDV 149


>gi|289193176|ref|YP_003459117.1| KH domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939626|gb|ADC70381.1| KH domain protein [Methanocaldococcus sp. FS406-22]
          Length = 218

 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE----IEAARE 608
           +EI+ IP +++  +IG  G V + I ++ G K+ ID DGTV I  +   +    +  A++
Sbjct: 12  IEILKIPRERVGVLIGKKGNVKKTIEKELGVKLEIDADGTVTIYGTDKQKDPLAVWKAKD 71

Query: 609 MIRSI 613
           ++R+I
Sbjct: 72  IVRAI 76


>gi|255562910|ref|XP_002522460.1| nucleic acid binding protein, putative [Ricinus communis]
 gi|223538345|gb|EEF39952.1| nucleic acid binding protein, putative [Ricinus communis]
          Length = 559

 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           M +P DQI  VIG GG+VI+ I  +TGA++ I  D
Sbjct: 165 MLVPADQIGCVIGKGGQVIQSIRSETGAQIRILKD 199


>gi|168704816|ref|ZP_02737093.1| RNA binding S1 domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 1097

 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD--VVKEGDTVWVKLLDFDDRG 681
           KG V+ V+ FGAFV       GLVHISQ++   +    D   V +  TVWV  +   ++ 
Sbjct: 866 KGTVLNVVPFGAFVDIGLKESGLVHISQMANRYIKSPYDVVSVGDVVTVWVMEVKAGEK- 924

Query: 682 KIKLSMKVVDQNTGKP 697
           KI LSM    Q   +P
Sbjct: 925 KISLSMIQPGQERRQP 940


>gi|307594773|ref|YP_003901090.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
 gi|307549974|gb|ADN50039.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
          Length = 196

 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           R   +++   P +N++ +G+VV+  DFGAFV   G  D L+H +Q+  + V
Sbjct: 69  RVRFKALVYTPLINEVVEGEVVRTEDFGAFVR-IGPIDALIHRTQMMEDNV 118


>gi|301155568|emb|CBW15036.1| ribonuclease PH (pseudogene) [Haemophilus parainfluenzae T3T1]
          Length = 238

 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 38/231 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   D S+     GQ+   +T  Y       
Sbjct: 12  RPIKI-TRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVTAEY------- 63

Query: 71  GKIPGGYLRRESRPTEN------EILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDL 122
           G +P     R  R           + I R+I RS+R +       E  + +  +V+Q D 
Sbjct: 64  GMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQAD- 122

Query: 123 ESSPHVVSMVAASAALM--LSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
                  S+  A+ AL   ++GL         P +G +    V  + G+ V +    ED 
Sbjct: 123 -GGTRTASITGAAVALCDAINGLIANGTLKTNPIKGLIAAISVGIVEGEAVCDLEYVEDS 181

Query: 172 GS-LDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIEA 217
            +  D+ V   +D   M+E+    E    S + +L  +      C+ +  A
Sbjct: 182 AAETDMNVVMMEDG-RMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAA 231


>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
          Length = 243

 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV---TLGTREDEQ 361
           R DGR +  +R ++    +L R HGS+ + +GDT+ +  V     GT+++E 
Sbjct: 5   RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN 56


>gi|77920263|ref|YP_358078.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
 gi|77546346|gb|ABA89908.1| SSU ribosomal protein S1P [Pelobacter carbinolicus DSM 2380]
          Length = 399

 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E AR+   ++ +  +   + KG V  + DFGAF+   G  +GL+ IS+
Sbjct: 177 NVVVSHRAILEEERARQR-ETLRETLQEGMVVKGTVTSLRDFGAFID-IGGLEGLLPISE 234

Query: 652 LSTERVAKTSDVVKEGD--TVWVKLLDF 677
           +S  RV    DV+  G    + +K LD+
Sbjct: 235 ISYGRVENIEDVLHVGQELELAIKKLDW 262


>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 258

 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R S   RD+    G++    GS+    G T+ +  V L   +++ Y D+     + 
Sbjct: 21  REDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKL--VQEDVYEDT---PDQG 75

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP--------VLPQTAQFPYTLR 424
           + ++    LP A  E    G PS   I  GR+  RAI          +L +  +  +T+ 
Sbjct: 76  NLVVSAELLPLAAAEY-ETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGK-AWTVY 133

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVP 454
           +   +   DG+   A+V  +  A++DA VP
Sbjct: 134 VDVYVLNFDGNLFDASVIAAMSAILDARVP 163


>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
          Length = 213

 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 14/187 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R I  ++G+  +  GS+   +G+T+ +V    G  E    + +      
Sbjct: 9   LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTK-VVAAIYGPHE----IRTNRAKAP 63

Query: 372 ND---FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVS 427
           ND       Y+    +  E  R   P   +     L  +       +T  +P + + I  
Sbjct: 64  NDSAVINCQYSMATFSRSERKRR--PRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFV 121

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           ++ +SDG +    V  ++LAL+DAG+ + + V      L  +G+  ++  DIS  E+ +G
Sbjct: 122 QVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLA-NGETPLV--DISHLEETMG 178

Query: 488 HMDFKVA 494
                VA
Sbjct: 179 GPSLTVA 185


>gi|310789617|gb|EFQ25150.1| S1 RNA binding domain-containing protein [Glomerella graminicola
            M1.001]
          Length = 1772

 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +I  G+V KV +FGAF+    + +  GL H S+++ + V     +  EGD V  K+L  D
Sbjct: 1289 QIVTGKVRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKVLSVD 1348

Query: 679  D-RGKIKLSMK 688
            D + +I  S++
Sbjct: 1349 DEKRRITFSLR 1359


>gi|229119724|ref|ZP_04248986.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
 gi|228663749|gb|EEL19327.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
          Length = 138

 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           GLVHIS+++   V   +D +K GD V VK+++ +  GKI LS+K
Sbjct: 9   GLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIK 52


>gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
 gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
          Length = 255

 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 8/149 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R DGR    +R +S   G      GS L   G+T+ + V +          DS 
Sbjct: 1   MTNTPLRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSG 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y+ LP AT + S      G    R     RL  R++  ++  +A    T
Sbjct: 61  EGW----VTGEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA 451
           + +  ++  +DG +  A + G+ +AL DA
Sbjct: 117 IVLDCDVLRADGGTRTAAITGAYVALADA 145


>gi|14521883|ref|NP_127359.1| DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
 gi|5459103|emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit E' [Pyrococcus abyssi
           GE5]
          Length = 188

 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           P+  ++ +G VV  + FGAFV   G  DGLVHISQL  + V 
Sbjct: 79  PKQQEVVEGTVVDAVPFGAFVR-IGPMDGLVHISQLMDDYVV 119


>gi|224052757|ref|XP_002193665.1| PREDICTED: programmed cell death 11 [Taeniopygia guttata]
          Length = 1885

 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 595 IASSSLAEIEAARE--MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           I S   A I A +E  ++R+ +++ +   +  G V  VM FG FV F     GL     +
Sbjct: 759 ILSRKSAVISAVQEEKVVRNFSEI-QPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSM 817

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           S + V  T D    G TV  K++  D ++ ++ L++KV + ++G
Sbjct: 818 SDKFVTDTKDHFVVGQTVIAKVMSTDEEKQRVLLNLKVSECSSG 861


>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Aspergillus fumigatus Af293]
 gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus fumigatus Af293]
          Length = 269

 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 6/160 (3%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R+DGR    +R + AQ+     + GSS    G+T +I+    G  E ++   +     
Sbjct: 13  KLRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNT-SIMCSVHGPAEGKRGDATGGAAG 71

Query: 371 RNDFMMHYNFLPCATGEVSR---MGAPSRREIGHGRLARRAIHPVLPQTAQFPY-TLRIV 426
               ++  +        V R    G   R+      + R A    L  T  +P+ T+ I 
Sbjct: 72  SAGAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHL-HTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  +DGS   A V   +LAL+DAG+P+   ++    G+
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGM 170


>gi|332291651|ref|YP_004430260.1| Tex-like protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169737|gb|AEE18992.1| Tex-like protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 707

 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A++    + IR+I +V +  ++  G V  V  FGAFV       GL+HIS L+   V+  
Sbjct: 619 AKVFTFNQNIRTIENV-QPGQLLPGIVNNVTAFGAFVDIGIKESGLIHISNLADGFVSDV 677

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S  V     V VK+L+ D  R +I+L ++
Sbjct: 678 SAHVSLQQQVIVKVLEVDIARKRIQLKLE 706


Searching..................................................done


Results from round 2




>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 699/699 (100%), Positives = 699/699 (100%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT
Sbjct: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH
Sbjct: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
           DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG
Sbjct: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL
Sbjct: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA
Sbjct: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE
Sbjct: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP
Sbjct: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS
Sbjct: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS
Sbjct: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL
Sbjct: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT
Sbjct: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV
Sbjct: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699


>gi|257096719|sp|B3PXD7|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 712

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/702 (66%), Positives = 568/702 (80%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L EDV+L A++FGH   +PV++AI KLA++ AKEP     +D+S 
Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E     +   E+ ++F+ 
Sbjct: 241 LESEMLGLAEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I 
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIA 702


>gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
 gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
          Length = 715

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/702 (66%), Positives = 570/702 (81%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEIEWAGRPLKLETG++ARQ+DGAV+ATYGET+VLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +L+EDV+L A++FGH   +PVI+AI KLA++ AKEP   + +DFS 
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           LE EM  + + +LR +  I EK  R   +D +K K+ ++F  E     ++  EI +VF+ 
Sbjct: 241 LENEMLGLAETELRTAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYSPEEIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL+QA+ GR HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           AKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + 
Sbjct: 661 AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVA 702


>gi|15887437|ref|NP_353118.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
           tumefaciens str. C58]
 gi|187470963|sp|A9CKQ7|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 713

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/702 (66%), Positives = 570/702 (81%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEIEWAGRPLKLETG++ARQ+DGAV+ATYGET+VLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +L+E+++L A++FGH   +PVI+AI KLA++ AKEP   + +DFS 
Sbjct: 181 GTQDAVLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEPEDFSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           LE EM  + + +LR +  I EK  R   +D +K K+ ++F  E     ++  EI +VF+ 
Sbjct: 241 LENEMLGLAETELRTAYKITEKAARYAAVDAVKTKVKAHFLPEEGEAKYSPEEIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL+QA+ GR HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           AKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + 
Sbjct: 661 AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVA 702


>gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii
           NGR234]
 gi|254782732|sp|C3MC71|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
           NGR234]
          Length = 717

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/703 (68%), Positives = 573/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQVI+ VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVTVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VVSMVAASAAL LSG+PF GP+ GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENNPDVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+AVLMVE EA +L EDV+L A++FG    +PVI+AI KLA++ AKEP   D +D S 
Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQQGFQPVIDAIIKLAEVAAKEPREFDPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE  M  + +++LR +  I EK  R   +D +K K+  +F  E   + +    EI SVF+
Sbjct: 241 LENAMLAIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHTAEEIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+ 
Sbjct: 361 GEDEQYVDSLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ER
Sbjct: 601 SSSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +V
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVV 703


>gi|222084321|ref|YP_002542850.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
           radiobacter K84]
 gi|254782699|sp|B9JGS9|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
           radiobacter K84]
          Length = 710

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/702 (67%), Positives = 568/702 (80%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+HTVEIEWAGRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFDIHTVEIEWAGRPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++SMVA SAAL LSG+PF GP+ GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDILSMVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+AVLMVE EA +LSEDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTQEAVLMVESEAKELSEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE EM  + + +LR +    +K  R   +D +K K+ ++F  E     ++   I +VF+ 
Sbjct: 241 LEAEMLSIAEGELRTAYKNTQKAERYAAVDAVKAKVKAHFFPEGVEPKYSAEVIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VG+L RTHGSSLF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD GITA+QMD+KI GI+E IM +AL QAK GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTDGGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ + 
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQELA 702


>gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|123385010|sp|Q1MN44|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 712

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/701 (66%), Positives = 567/701 (80%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+EDV+L A++FGH   +PV++AI KLA++ AKEP      D+S 
Sbjct: 181 GTYDAVLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E     +   E+ ++F+ 
Sbjct: 241 LESEMLGLAEGELRNAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGR+ ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 712

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/701 (66%), Positives = 567/701 (80%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PV++AI KLA++ AKEP      D+S 
Sbjct: 181 GTYDAVLMVESEAKELNEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPADYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E     +   E+ ++F+ 
Sbjct: 241 LETEMLGLAEGELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGR+ ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium sp. BNC1]
 gi|123161513|sp|Q11BC3|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1]
          Length = 715

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K G DFFPLT
Sbjct: 1   MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQVII V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P ++SMVAASAAL LSG+PF GPV  A+V Y+ G+Y+LNP LDE  +  LDL V+
Sbjct: 121 DLENDPDILSMVAASAALTLSGVPFMGPVGAARVGYVGGEYILNPHLDEMAETKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA++L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTSDAVLMVESEAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKEPREFLPEDLSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFE 296
           LE EM ++++ DLR +  I  K  R   ++  K K+   F  E +    W   ++ +VF+
Sbjct: 241 LEAEMLKVVEADLRDAYKITNKQARYDAVNAAKAKVKEAFLPEGAEAYKWTPEQVATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  +VR I A+VG+L RTHGS++F RG+TQA+VV TLGT
Sbjct: 301 ALQAKIVRWNILDTGSRIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP  
Sbjct: 361 GEDEQYVDSLTGTVKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAP 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L
Sbjct: 421 EQFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM +AL+QAK GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTAEGVTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             LSESR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 NALSESRGELGEFAPRIEVMHIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAAR+ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ ER
Sbjct: 601 SSNGKEIEAARKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAPER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           V KT+DVVKEGD V+VKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VQKTTDVVKEGDKVFVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4]
 gi|254782700|sp|B9JYL0|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4]
          Length = 714

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/702 (65%), Positives = 567/702 (80%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+VH+VEIEWAGRPLKLETG+IARQ+DGAVLA+YGETVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNVHSVEIEWAGRPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +L+EDV+L A++FGH   +PVI+AI KLA++ AKEP   + +D S 
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE EM  + + +LR +  I +K  R   +D +K K+ ++F  E     +    I +VF+ 
Sbjct: 241 LEAEMLSIAEAELRDAYKITQKADRYTAVDAVKAKVKAHFFPEGAEPKYTNEVIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KIAS
Sbjct: 541 AITEGRSQLGEFAPRIEVMTIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  EIEAAR+ I SI   PE+  +Y+G VVK  DFGAFV+F G+RDGLVHISQL+ +RV
Sbjct: 601 ASGKEIEAARKWIHSIVAEPEIGVVYEGTVVKTADFGAFVNFFGSRDGLVHISQLAVDRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           AKT DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 AKTQDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIV 702


>gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium loti
           MAFF303099]
 gi|81778152|sp|Q98BI3|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti
           MAFF303099]
          Length = 715

 Score =  891 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/703 (64%), Positives = 560/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K G DFFPLT
Sbjct: 1   MFNQHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQ+++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVI+AI KLA++ AKEP    + D+S 
Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFE 296
           LE EM +++ ++L  +  I +K  R   +D +K K+ + F+    E   +   +I SVF+
Sbjct: 241 LEGEMLKIVGDELSNAYKITDKQQRYAAVDAVKAKVKAAFAPAEGEEPKYTSEQIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAKVVR  +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 HALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I +I   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ ER
Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIV 703


>gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 715

 Score =  888 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/703 (63%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K G DFFPLT
Sbjct: 1   MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQ+++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVI+AI KLA++ AKEP    + D+S 
Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTAPDYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFE 296
           LE EM +++ ++L  +    +K  R   +D +K K+ + F+    E + +   +I SVF+
Sbjct: 241 LEAEMLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPAEGEDAKYTSEQIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAKVVR  +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 HALTGARSELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I +I   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANDR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + 
Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKELA 703


>gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 699

 Score =  886 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/698 (84%), Positives = 641/698 (91%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDVHTVE++WAGRPLKLETGRIA+QSDGAVLATYGETVVLATVV+DR+LK  QDFFPLT
Sbjct: 1   MFDVHTVEVDWAGRPLKLETGRIAQQSDGAVLATYGETVVLATVVFDRNLKKDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYAVGKIPGGYLRRESRPTENE+LISRMIDRSIRPLF K YKNETQVIINVMQH
Sbjct: 61  VNYQERTYAVGKIPGGYLRRESRPTENEVLISRMIDRSIRPLFPKHYKNETQVIINVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
           DLE+ PHVVSMVA SAALMLSGLPFEGP+ GAQVDY++ +YVLNP LD ++GSLDLFVSG
Sbjct: 121 DLENDPHVVSMVAVSAALMLSGLPFEGPIAGAQVDYVDDKYVLNPPLDGEKGSLDLFVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T+DAVLMVELEANQLSEDVVLDAI+FGH ECKPVIEAISKL KMCAKEPI  DSKD SKL
Sbjct: 181 TRDAVLMVELEANQLSEDVVLDAIMFGHAECKPVIEAISKLVKMCAKEPIFFDSKDLSKL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           EEEM  M   DLR S FIPEK VRC+ I+D+K+K+ S+F +E SSW E E+ SVFED+ A
Sbjct: 241 EEEMFHMFGADLRNSSFIPEKSVRCEAINDIKEKVFSHFCTEDSSWTEEEVSSVFEDMHA 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  +++ K+RMDGRD ETVRDISAQVGLLQRTHGSS F RG TQAIVVVTLGT+EDE
Sbjct: 301 KVVRASIVENKIRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDE 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           QYVDSL+GTQRNDFMMHYNF P + GEV R+GAPSRREIGHGRLARRAIHP+LPQ AQFP
Sbjct: 361 QYVDSLAGTQRNDFMMHYNFFPFSVGEVGRIGAPSRREIGHGRLARRAIHPILPQAAQFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YTLRIVSEIT S+GSSSMATVCG+SLALMDAGVPISKPVAGIAMGLVK+ D F++LSDIS
Sbjct: 421 YTLRIVSEITGSNGSSSMATVCGASLALMDAGVPISKPVAGIAMGLVKEDDQFVVLSDIS 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+EDH GHMDFKV+GTDSGITAMQMDMKI GIS++I+++ALQQ KRGRLHILNEMSKV+S
Sbjct: 481 GEEDHFGHMDFKVSGTDSGITAMQMDMKIRGISKDIIMVALQQGKRGRLHILNEMSKVIS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESRLQLGEFTPRVEIM IPPDQIRNVIG+GGKVIR IVE+TGAKVNIDDDGT+KIASSS 
Sbjct: 541 ESRLQLGEFTPRVEIMVIPPDQIRNVIGVGGKVIRNIVEKTGAKVNIDDDGTIKIASSSP 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AEIEAA EMIR ITDVPEVNKIYKG VVKVMDFGAFV+FCGARDGLVHIS LSTERVAKT
Sbjct: 601 AEIEAACEMIRLITDVPEVNKIYKGHVVKVMDFGAFVNFCGARDGLVHISHLSTERVAKT 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SD+VKEGD VWVKLLDFDDRGKIKLSMKVVDQNTGKPI
Sbjct: 661 SDIVKEGDVVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698


>gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
 gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
          Length = 723

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/701 (61%), Positives = 553/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+A+YGETVVLATVV  ++ ++G DF PLT
Sbjct: 6   MFHKHSVEIDWGGRPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGVDFLPLT 65

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 66  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 125

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG+PF+GP+  A+V ++N +YVLNP LDE     L+L V+
Sbjct: 126 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFMNDEYVLNPTLDEMVDTRLELVVA 185

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSED++L A++FGH   +PVI AI +LA+  AKEP  + + D S 
Sbjct: 186 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVAAIDNSA 245

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+EM  +I++DLR +  IP K  R   +   K+K+++++  E     +++  +  VF++
Sbjct: 246 LEKEMLALIEQDLRAAYAIPVKQDRYAAVGKAKEKVLAHYFPEGAEPKYDKLRVAEVFKE 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 306 LEAKIVRWNILDTGKRIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSLSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 366 EDEQYIDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 426 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLS 485

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 486 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAK 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 546 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 605

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++AA + I+SI   PEV ++Y+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 606 NDGEAMKAAIKWIKSIASDPEVGQVYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAVGRV 665

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ I
Sbjct: 666 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDI 706


>gi|260461975|ref|ZP_05810220.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
           opportunistum WSM2075]
 gi|259032222|gb|EEW33488.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
           opportunistum WSM2075]
          Length = 715

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/703 (63%), Positives = 560/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K G DFFPLT
Sbjct: 1   MFNHHKVEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQ+++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P ++S+VA SAAL LSG+PF GPV GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVI+AI KLA++ AKEP    + D+S 
Sbjct: 181 GTADAVLMVESEAKELGEELMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFTAPDYSV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFE 296
           LE EM +++ ++L  +    +K  R   +D +K K+ + F+    + + +   +I SVF+
Sbjct: 241 LEAEMLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPAEGDEAKYTSEQIGSVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAKVVR  +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT SGIT++QMD+KI GI+E IM +AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTSGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ +R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 HALTGARPELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I +I   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ ER
Sbjct: 601 SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKTSDVVKEGD VWVKL+ FD+RGK++LSMKVVDQ +GK IV
Sbjct: 661 VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQASGKEIV 703


>gi|190889779|ref|YP_001976321.1| polyribonucleotide nucleotidyltransferase [Rhizobium etli CIAT 652]
 gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
           CIAT 652]
          Length = 706

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/695 (66%), Positives = 562/695 (80%), Gaps = 3/695 (0%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           EIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLTVNYQE+T
Sbjct: 2   EIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKT 61

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QHDLE++P 
Sbjct: 62  YAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNPD 121

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           ++SMVA SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+GT DAVL
Sbjct: 122 ILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDAVL 181

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE EA +L EDV+L A++FGH   +PV++AI KLA++ AKEP     +D+S LE EM  
Sbjct: 182 MVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSALESEMLG 241

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQAKVVR 304
           + + +LR +  I +K  R   +D +K K+ ++F  E     +   E+ ++F+ +QAK+VR
Sbjct: 242 LAEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKHLQAKIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVD
Sbjct: 302 WNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVD 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           SL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR
Sbjct: 362 SLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDED
Sbjct: 422 VVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K ++ESR 
Sbjct: 482 HLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKAITESRG 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIASSS  EIE
Sbjct: 542 QLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSSGKEIE 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERVAKT DVV
Sbjct: 602 AARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTQDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           KEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I 
Sbjct: 662 KEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIA 696


>gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium
           caulinodans ORS 571]
 gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans
           ORS 571]
          Length = 756

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/703 (60%), Positives = 542/703 (77%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETG++ARQ+DGAV A+YG+T VLATVV  R  K GQDFFPLT
Sbjct: 33  MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 92

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQV++ V+ H
Sbjct: 93  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 152

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GP+ GA+V ++  +YVLNP ++E + S LDL V+
Sbjct: 153 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 212

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FGH   +PVIEAI +LA+  AKEP   +  D S 
Sbjct: 213 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA 272

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSVF 295
           LE ++ ++ + DLR +  I +K  R + +   K K+  YF         +    ++  V 
Sbjct: 273 LEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQDVAEVL 332

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++AK+VR  +LD  +R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 333 KGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 392

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP 
Sbjct: 393 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 452

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR+VSEI ES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+ +G+ F +
Sbjct: 453 KHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV 512

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+E IM +AL QAK GR HIL EM
Sbjct: 513 LSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 572

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK L+ +R +LGE  PR+E+M I  D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI
Sbjct: 573 SKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 632

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV  IY G VVKV+DFGAFV+F G++DGLVHISQLS E
Sbjct: 633 ASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLSKE 692

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RVAK+SDVVKEGD V VKL+ FD+RGK +LSMK VDQ TG+ +
Sbjct: 693 RVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAVDQTTGEDL 735


>gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi
           ATCC 49188]
 gi|187610317|sp|A6WWW1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 713

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/703 (65%), Positives = 565/703 (80%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P V+SMVAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FG    +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTADAVLMVESEAQELSEEVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE +M  +++ DLR +  I EK  R   +D  K K  ++F  E      ++  +  +VF+
Sbjct: 241 LEAKMLAVVENDLRDAYKITEKQARYVAVDAAKAKAKAHFFPEGVEEPEFSAEKFATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD +TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGSRIDGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RRE+GHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREVGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 DQFPYTIRSVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGTD+GITA+QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTDNGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K LS SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KALSTSREELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+++R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLASDR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK +V
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEVV 703


>gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 710

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/702 (62%), Positives = 561/702 (79%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H VEI+WAGRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K G DFFPLT
Sbjct: 1   MFDTHKVEIDWAGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF++ YKNETQV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P V++MVAASAAL LSG+PF GP+ GA+V YING+Y LNP +DE  +  LDL V+
Sbjct: 121 DLENDPDVLAMVAASAALTLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSESQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA++L+ED++L A++FGH   +PVI+AI KLA+  AKEP      D+S 
Sbjct: 181 GTEGAVLMVESEAHELAEDIMLGAVMFGHRGFQPVIDAIIKLAEHAAKEPREHVVADYSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFE 296
           LE EM Q+++ +LR +  I +K  R   +D +K K+  +F  E      +++ ++ +VF+
Sbjct: 241 LEAEMLQLVEGELRDAYKITDKTQRYTAVDAVKAKVTGHFLPEGVEDTKYSKEQVGTVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD +TVR I ++ G+L R HGS+LF RG+TQA+VV TLGT
Sbjct: 301 SLQAKIVRWNILDTGGRIDGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ+VD+L+GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GEDEQFVDALTGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPAP 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSE+TES+GSSSMATVCG+SLALMDAGVP+ + VAGIAMGL+K+ + F +L
Sbjct: 421 EQFPYTIRAVSEVTESNGSSSMATVCGTSLALMDAGVPLKRSVAGIAMGLIKEDERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGITSLQMDIKIQGITEEIMQIALDQAKGGRLHILQEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + LSESR +LGEF PR+E+M IP D+IR+VIG GGK+IR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 QALSESRAELGEFAPRIEVMQIPTDKIRDVIGAGGKIIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAA++ I SI   PEV ++Y+G VVK ++FGAFV+F G+RDGLVHISQL+ +R
Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGEVYEGTVVKTVEFGAFVNFFGSRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+D+VKEGD VWVKL+ FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGQEI 702


>gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
 gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
          Length = 714

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1
           str. 9-941]
 gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           biovar Abortus 2308]
 gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC
           23365]
 gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC
           23445]
 gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19]
 gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
           2308 A]
 gi|254690300|ref|ZP_05153554.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 6
           str. 870]
 gi|254694788|ref|ZP_05156616.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 3
           str. Tulya]
 gi|254705168|ref|ZP_05166996.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 3
           str. 686]
 gi|254707316|ref|ZP_05169144.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           M163/99/10]
 gi|254709144|ref|ZP_05170955.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           B2/94]
 gi|254718207|ref|ZP_05180018.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. 83/13]
 gi|254731329|ref|ZP_05189907.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 4
           str. 292]
 gi|256030669|ref|ZP_05444283.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           M292/94/1]
 gi|256158670|ref|ZP_05456553.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
           M490/95/1]
 gi|256254074|ref|ZP_05459610.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti B1/94]
 gi|256258553|ref|ZP_05464089.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 9
           str. C68]
 gi|256370564|ref|YP_003108075.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
           4915]
 gi|260169573|ref|ZP_05756384.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. F5/99]
 gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
 gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M163/99/10]
 gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           B2/94]
 gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
           686]
 gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
 gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
           07-0026]
 gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
           str. B3196]
 gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
 gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
 gi|75496015|sp|Q57A96|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123727384|sp|Q2YQR3|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037301|sp|A9M9Z8|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037302|sp|B0CK15|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702625|sp|B2S9G0|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH
           domain, type 1 [Brucella melitensis biovar Abortus 2308]
 gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC
           23365]
 gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC
           23445]
 gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19]
 gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
           2308 A]
 gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
           4915]
 gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
 gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           B2/94]
 gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M163/99/10]
 gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
           686]
 gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
 gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
           07-0026]
 gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
           str. B3196]
 gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
 gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
          Length = 714

 Score =  881 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisA53]
 gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisA53]
          Length = 721

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/701 (61%), Positives = 548/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFHKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+ V+ H
Sbjct: 61  VDYIEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P ++++VA SAAL LSG PF+GP+  A+V +IN +YVLNP LDE  +  LDL V+
Sbjct: 121 DMENDPDILALVATSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMIETQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PV++AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPRDVKVIDESV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+E+  +I++DLR +  IP K  R   +   K K+++++  E     +++  I  VF++
Sbjct: 241 LEKEILGLIEQDLRAAYAIPVKQDRYAAVGKAKDKVMAHYFPEGQEPQYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSLSGT +  F++HYNF P + GE  RMG   RREIGHG+LA RA+HPVLP   
Sbjct: 361 EDEQYIDSLSGTYKEQFLLHYNFPPFSVGETGRMGGTKRREIGHGKLAWRALHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTDHGITSLQMDIKIAGITEEIMKVALGQAKEGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNIDDDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIDDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PE+N IY G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDL 701


>gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           1 str. 16M]
 gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           ATCC 23457]
 gi|256045772|ref|ZP_05448650.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256112492|ref|ZP_05453413.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           3 str. Ether]
 gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           2 str. 63/9]
 gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           3 str. Ether]
 gi|81851039|sp|Q8YEB7|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782709|sp|C0RG51|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC
           23457]
 gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           3 str. Ether]
 gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           2 str. 63/9]
 gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           M28]
 gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
           M5-90]
          Length = 714

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAEEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
 gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
          Length = 717

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/701 (60%), Positives = 545/701 (77%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF VH  E++WAGR L LETG++ARQ+DGAV+A++GET VLATVV  ++ K GQDFFPLT
Sbjct: 1   MFQVHREELDWAGRKLVLETGKVARQADGAVMASWGETTVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF   Y+ +TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           DLE+ P +++MVAASAAL LSG+PF GPV GA+V YINGQ  LNP ++E +   LDL V+
Sbjct: 121 DLENDPDILAMVAASAALTLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+ +L+A++ GH   +PVI+AI +LA+  AK+P  +   D + 
Sbjct: 181 GTSDAVLMVESEAKELSEETMLEAVMTGHRGFQPVIDAIIRLAERAAKDPRDLIVPDLAH 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           + E ++++ + DLR +     K  R   +D +K K+++    E    ++ + ++  VF++
Sbjct: 241 VAEAVARIAEADLREAYKHTVKQERYAAVDAVKAKVMTELFPEGSEPAFTKEQVGEVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  +R+DGRD +TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LQAKVVRWNILDTGIRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VDSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  A
Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+  P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+T++QMD+KI GI+E IM +AL QAK GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTSLQMDIKIAGITEEIMKVALAQAKDGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ SR +LGEF PR+E + IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTTSRAELGEFAPRIETLKIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI   PEV  IY+G VVK  DFGAFV+F GA+DGLVHISQLS +RV
Sbjct: 601 SDGNSIKAAINWIKSIASDPEVGMIYEGTVVKTADFGAFVNFFGAKDGLVHISQLSKQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT+DVVKEGD V VKLL FDDRGK++LSM+ VDQ TG+ +
Sbjct: 661 AKTTDVVKEGDRVKVKLLGFDDRGKVRLSMRAVDQETGEDL 701


>gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
 gi|81751805|sp|Q8FXS9|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330]
          Length = 714

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDED+LG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDYLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
 gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
          Length = 722

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/701 (61%), Positives = 552/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG PF GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI +LA+  AKEP  +   D + 
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRELIEIDNAA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +I+++LR +  IP K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLIEQELRAAYAIPVKQERYAAVGKVKEKALAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR I AQ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KIGGI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIGGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQATGEDL 701


>gi|187471094|sp|A8IGA3|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 724

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/703 (60%), Positives = 542/703 (77%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETG++ARQ+DGAV A+YG+T VLATVV  R  K GQDFFPLT
Sbjct: 1   MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+  YKN+TQV++ V+ H
Sbjct: 61  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GP+ GA+V ++  +YVLNP ++E + S LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FGH   +PVIEAI +LA+  AKEP   +  D S 
Sbjct: 181 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSVF 295
           LE ++ ++ + DLR +  I +K  R + +   K K+  YF         +    ++  V 
Sbjct: 241 LEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQDVAEVL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++AK+VR  +LD  +R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 301 KGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP 
Sbjct: 361 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR+VSEI ES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+ +G+ F +
Sbjct: 421 KHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+E IM +AL QAK GR HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK L+ +R +LGE  PR+E+M I  D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI
Sbjct: 541 SKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV  IY G VVKV+DFGAFV+F G++DGLVHISQLS E
Sbjct: 601 ASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLSKE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RVAK+SDVVKEGD V VKL+ FD+RGK +LSMK VDQ TG+ +
Sbjct: 661 RVAKSSDVVKEGDKVKVKLVGFDERGKTRLSMKAVDQTTGEDL 703


>gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
           DFL-43]
 gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
           DFL-43]
          Length = 706

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/702 (66%), Positives = 561/702 (79%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H VEIEW GRPL LETG++ARQ+DGAV+ATYGETVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFDTHKVEIEWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L SR+IDR +RPLF   YKN+TQ+II VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIITVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++++VAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPESDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+EDV+L A++FGH   +PVI+AI KLA+  AKEP    + D S 
Sbjct: 181 GTNDAVLMVESEAKELAEDVMLGAVMFGHKSFQPVIDAIIKLAEAAAKEPRDFSAPDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFE 296
           LE EM  M + DLR +    +K  R   ID++K K+  +F+    E   +    I +VF+
Sbjct: 241 LEAEMLSMCEADLRKAYENTDKAARYAAIDEVKAKVKEHFAPAEGEEPRFTSEVIGAVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAKVVR  +L+ K R+DGRD  TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 SLQAKVVRGAILETKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+GT++  FM+HYNF P + GE  R G+P RREIGHG+LA RAI+P++P  
Sbjct: 361 GEDEQYVDSLTGTKKATFMLHYNFPPYSVGETGRTGSPGRREIGHGKLAWRAINPMMPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+DF +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGEDFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI+E IM +AL QA+ GRLHIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTADGITALQMDIKIDGITEEIMKIALSQAEGGRLHILKEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             L+ESR QLGEF PR+E+M IP D+IR+VIG GGK+IR IVE+TGAK+NIDDDGT+KIA
Sbjct: 541 NALTESRGQLGEFAPRIEVMNIPVDKIRDVIGTGGKIIREIVEKTGAKINIDDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAA++ I SI   PEV  IY+G VVKV DFGAFV+F G +DGLVHISQL+ ER
Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGVIYEGTVVKVADFGAFVNFFGPKDGLVHISQLAAER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKTSDVVKEG  VWVKLL FD+RGK++LSMKVVDQ TGK +
Sbjct: 661 VAKTSDVVKEGQKVWVKLLGFDERGKVRLSMKVVDQETGKEV 702


>gi|209883656|ref|YP_002287513.1| polyribonucleotide nucleotidyltransferase [Oligotropha
           carboxidovorans OM5]
 gi|226702670|sp|B6JCR8|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha
           carboxidovorans OM5]
          Length = 714

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/701 (60%), Positives = 549/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VE++W GRPLKLETG++ARQ+DGAV+ATYGETVV+ATVV  ++ K+G DF PLT
Sbjct: 1   MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF+  Y+ +TQVI+  + H
Sbjct: 61  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +V+MVAASAAL LSG+PF GPV  A+V ++N +++LNP LDE     LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA +L E+++L A++FGH   +PV++AI +LA+  AKEP  + +   + 
Sbjct: 181 GTATAVLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKEPRDVVATVNAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+E+  ++++DLR +  IP K  R   +   K K++ +F  E     + +  ++ VF+D
Sbjct: 241 LEKEILGIVEQDLRKAYSIPVKQDRYAAVGAAKDKVLEHFFPEGIEPRYEKLRVLDVFKD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGRRIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSL+GT +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDSLAGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +GD F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTEKGVTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E++ IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++   I AA + I+SIT  PEV +IY G VVKVM+FGAFV+F G +DGLVHISQL+  RV
Sbjct: 601 ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAASRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL  DDRGK++LSMK VDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGEDL 701


>gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris TIE-1]
 gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris TIE-1]
          Length = 722

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/701 (62%), Positives = 556/701 (79%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV  +S ++G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG+PF+GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI  LA+  AKEP  +   D S+
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVDDSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  IP K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I AQVG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSLSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PE+ +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEIGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDL 701


>gi|256060129|ref|ZP_05450311.1| polynucleotide phosphorylase/polyadenylase [Brucella neotomae 5K33]
 gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
          Length = 714

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E     E    +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIYPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium
           japonicum USDA 110]
 gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
           USDA 110]
          Length = 720

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/701 (60%), Positives = 552/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI  V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +V++VA+SAAL LSG PF+GP+  A+V ++N +YVLNP LDE     LDL V+
Sbjct: 121 DMENDPDIVALVASSAALTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PVI AI +LA+  AKEP  +   D + 
Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVIDNAA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+EM  +++++LR +  IP K  R   +  +K+K+++++  E     +++  I  VF++
Sbjct: 241 LEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIAHYFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +   F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    ++AA + I+SI   PEV +IY G VVKVM+FGAFV+F G++DGLVHISQL++ RV
Sbjct: 601 SDGEAMKAAIKWIKSIASEPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQLASARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDL 701


>gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC
           25840]
 gi|187470942|sp|A5VTB6|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC
           25840]
          Length = 714

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/703 (64%), Positives = 557/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL +ETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E     E    +  ++F 
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATIFT 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|254713431|ref|ZP_05175242.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
           M644/93/1]
 gi|254716212|ref|ZP_05178023.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M13/05/1]
 gi|261217986|ref|ZP_05932267.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261321164|ref|ZP_05960361.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|260923075|gb|EEX89643.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261293854|gb|EEX97350.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
          Length = 714

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/703 (64%), Positives = 559/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRSIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|86355771|ref|YP_467663.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CFN 42]
 gi|123738432|sp|Q2KE00|PNP_RHIEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86279873|gb|ABC88936.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
           CFN 42]
          Length = 712

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/701 (66%), Positives = 571/701 (81%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P ++SM+A+SAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENNPDILSMIASSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L EDV+L A++FGH   +PV++AI KLA++ AKEP     +D+S+
Sbjct: 181 GTYDAVLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           LE EM +  + +LR +  I +K  R   +D +K K+ ++F  E     +   E+ ++F+ 
Sbjct: 241 LEGEMLKHFEAELREAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEEVGAIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT+DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTTDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
           hamburgensis X14]
 gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 748

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/701 (59%), Positives = 550/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 29  MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 88

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RP+E E L+SR+IDR +RPLF+  ++NETQVI+ V+ H
Sbjct: 89  VDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 148

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG PF GP+  A+V ++N +YVLNP LDE     L+L V+
Sbjct: 149 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVA 208

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSED++L A++FGH   +PVI AI +LA+  AKEP  +   D S 
Sbjct: 209 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVSQADDSA 268

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+EM  +I+ +LR +  I +K  R   +   K K+++++  E     +++  I +VF+ 
Sbjct: 269 LEKEMLGLIEGELRPAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFKH 328

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD++TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 329 LEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 388

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G+  RREIGHG+LA RAIHPVLP   
Sbjct: 389 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHH 448

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 449 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLS 508

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GI+++QMD+KI GI+E IM +AL QA+ GR+HIL EM+K
Sbjct: 509 DILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAK 568

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 569 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 628

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 629 NDGEAMKAAIKWIKSIASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRV 688

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K+SD+VKEGD V VKLL FDDRGK +LSMK VDQ TG+ +
Sbjct: 689 QKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKAVDQQTGEDL 729


>gi|254700800|ref|ZP_05162628.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 5
           str. 513]
 gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
           513]
 gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
           513]
          Length = 714

 Score =  878 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/703 (64%), Positives = 558/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKE      +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKELRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ +R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAADR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 703


>gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris CGA009]
 gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris CGA009]
          Length = 722

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/701 (62%), Positives = 557/701 (79%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG+PF+GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI  LA+  AKEP  +   D S+
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVDDSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  IP K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I AQVG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSLSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYVDSLSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDL 701


>gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
 gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
          Length = 714

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/701 (60%), Positives = 546/701 (77%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H  E++WAGR L LETGRIARQ+DGAVLATYGET VLATVV  R+ K G DFFPLT
Sbjct: 1   MFEIHREELDWAGRKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF + Y+N+TQV++ V+ H
Sbjct: 61  VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P ++++VA SAAL +SG+PF GPV GA+V YING   LNP +DE  + +LDL V+
Sbjct: 121 DLENDPDILALVATSAALTISGIPFMGPVGGARVGYINGALKLNPTVDELKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE ++L+A++ GH   +PVI+AI +LA+  AKEP  +   D ++
Sbjct: 181 GTGDAVLMVESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKAAKEPRELAVADKAE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           +E  +  + + +LR +  I  K  R K +D +K K+      E +   +++ ++   F D
Sbjct: 241 VEAAVRDIAEGELREAYKITAKQERYKAVDAVKAKVALALFPEDAEPRFSKEKVAEAFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  VR+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LQAKVVRWNILDLGVRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VDSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  A
Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+RIVSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+K+ GI+E IM +AL QAK GRLHIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEEGVTSLQMDIKVAGITEEIMKVALDQAKGGRLHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGEF PR+E + IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTGARAELGEFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI + PEV +IY+G VVKV+DFGAFV+F G++DGLVHISQL+  RV
Sbjct: 601 SDGNSIKAAIAWIKSIANDPEVGQIYEGTVVKVVDFGAFVNFFGSKDGLVHISQLAKGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK+SDVVKEG+ V VKLL FDDRGK++LSM+ VDQ TG+ +
Sbjct: 661 AKSSDVVKEGEKVKVKLLGFDDRGKVRLSMRYVDQETGEDL 701


>gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella
           schoenbuchensis R1]
          Length = 733

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/701 (63%), Positives = 560/701 (79%), Gaps = 4/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGAVLATYGET+VLATVV  ++ K  QDFFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYAVGKIPGGY +RESRP+ENE LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGIPFVGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA +L EDV+L A+IFG    +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKLAEVAAKEPRDFIPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M  M+++DL+ +  I +K  R   ID +K ++V  F     E+  +N  +I +VF+
Sbjct: 241 LETTMLGMVEKDLQKAYTITDKQERHTAIDAIKAEVVDKFMSKIEENCEFNADQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR   TVR I ++VG+L R HGS+LF RG+TQA+V+ TLGT
Sbjct: 301 HLQAKIVRQNILDTGKRIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+GT +  F++HYNF P + GE  R+ +P RREIGHG+LA RAIHP+LP  
Sbjct: 361 SEDEQYIDSLTGTYKETFLLHYNFPPFSVGETGRISSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F IL
Sbjct: 421 DSFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E IM +AL+QAK GR+HILNEMS
Sbjct: 481 SDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMS 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVEQTGAK+NI+D+G +KIA
Sbjct: 541 KALTSARDELSEFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGAIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PE+  IY+G VVK  +FGAFV+F G+RDGLVHISQL++ER
Sbjct: 601 STDAKAIEAAKRWIHSIVDEPEIGSIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V KT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK 
Sbjct: 661 VEKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKE 701


>gi|121602640|ref|YP_989507.1| polynucleotide phosphorylase/polyadenylase [Bartonella
           bacilliformis KC583]
 gi|187470938|sp|A1UU54|PNP_BARBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120614817|gb|ABM45418.1| polyribonucleotide nucleotidyltransferase [Bartonella bacilliformis
           KC583]
          Length = 733

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/702 (63%), Positives = 564/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL +ETGR+ARQ+DGAV+ATYGETVVLATVV  ++ K  QDFFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYAVGKIPGGY +RESRP+ENE LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SM+AASAAL LSG+PF GP+ GA+V Y NG YVLNP LDE  +  LDL V+
Sbjct: 121 DLENNPDILSMIAASAALTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++LSE+V+L AI FG    +PVI+AI +LA++ AKEP     +DFS 
Sbjct: 181 GTENAVLMVESEAHELSEEVMLGAITFGQKGFQPVIDAIIQLAEVAAKEPREFIPEDFSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---SWNEGEIVSVFE 296
           LE+ M +MI++DLR +  I +K  R   ID +K +++S F+ E          +I +VF+
Sbjct: 241 LEKTMLKMIEKDLRKAYTITDKQQRYDAIDAIKTEILSKFAPEMEVNCELTADKIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 RLQAKIVRWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVD L+G  +  F++HYNF P + GE  R+ +P RREIGHG+LA RAIHP+LP  
Sbjct: 361 SEDEQYVDLLTGVCKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F+IL
Sbjct: 421 EAFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFVIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GIT++QMD+KI GI+E+IM +AL+QAK GR HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+++R +L EF+PR+E+M IP ++IR VIG GGKVIR IVEQTGAK+NI+DDGT+KIA
Sbjct: 541 KALTDARTELSEFSPRIEMMTIPVEKIREVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S     IE A+  I SI D PEV  IY+G VVK  +FGAF++F G+ DGLVHISQL+++R
Sbjct: 601 SPDTKSIETAKSWIHSIVDEPEVGTIYQGTVVKTTEFGAFINFFGSHDGLVHISQLASKR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DVVKEGD VWV+L+ FD+RGKI+LSMKVVDQ TGK I
Sbjct: 661 VAKTTDVVKEGDKVWVQLMGFDERGKIRLSMKVVDQQTGKEI 702


>gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           BTAi1]
 gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
           BTAi1]
          Length = 720

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/701 (60%), Positives = 544/701 (77%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S ++G DF PLT
Sbjct: 1   MFTKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+  + H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +++MVAASAAL LSG+PF+GP+  A+V + N +Y+LNP LDE     LDL V+
Sbjct: 121 DMENDPDILAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PVI AI +LA+  AKEP  +   D S 
Sbjct: 181 GTSDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPRDVAIIDNSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  + ++DLR +  IP K  R   +  +K+K+++YF  E     + +  +  VF++
Sbjct: 241 IEKEMLGIAEQDLRKAYAIPVKQERYAAVAAVKEKVMAYFFPEGQEPKYEKLRVADVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR+I  +VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGRRIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT R+VSE+TES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 421 EFPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    ++AA + I+SI   PE+ +IY G VVKVM+FGAFV+F G RDGLVHISQL+ +RV
Sbjct: 601 SDGEAMKAAIKWIKSIASDPEIGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQLADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGD V VKLL FDDRGK +LSMK VDQ TG+ +
Sbjct: 661 QKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKAVDQTTGEDL 701


>gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris HaA2]
 gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris HaA2]
          Length = 718

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/701 (61%), Positives = 552/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG++ARQ+DGAV+ATYGET+VLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +++MVAASAAL LSG PF+GP+  A+V +IN +YVLNP LDE  +  L+L V+
Sbjct: 121 DMENDPDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPRELVVIDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  IP K  R   +  +K+K +++F    E   +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIPVKQERYAAVGKVKEKAIAHFFPEGEEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR I A+ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL++ RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLASGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSM+VVDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMRVVDQETGEDL 701


>gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB18]
 gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB18]
          Length = 715

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/701 (62%), Positives = 551/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S K+G DF PLT
Sbjct: 1   MFNIHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+ V+ H
Sbjct: 61  VDYIEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P ++++VA+SAAL LSG PF+GP+  A+V +IN +YVLNP LDE     LDL V+
Sbjct: 121 DMENDPDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEMVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PV++AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKEPREVAVVDESV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+E+  +I+ +LR +  IP K  R   +   K+K+++++  E     +++  I  VF++
Sbjct: 241 LEKEILGLIEPELRAAYAIPVKQDRYAAVGKAKEKVMAHYFPEGQEPQYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR+I AQVG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSLSGT +  F++HYNF P + GE  RMG   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDSLSGTYKETFLLHYNFPPYSVGETGRMGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   I  D+IR VIG GGKVIR IVE+TGAKVNIDDDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIDDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PE+N IY G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPELNAIYDGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQETGEDL 701


>gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [polymorphum gilvum
           SL003B-26A1]
 gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
           SL003B-26A1]
          Length = 708

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/701 (61%), Positives = 545/701 (77%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE+EW GRPL LETG++ARQ+DGAV+ATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFDIHRVEVEWGGRPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF++ YKN+TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E++P ++++VA+SAAL LSG+PF GPV GA+V YING+YVLNP +D+  + SLDL V+
Sbjct: 121 DMENAPDILALVASSAALTLSGVPFMGPVGGARVGYINGEYVLNPLIDDMPESSLDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L EDV+L A++FGH+  + VI+AI KLA+  AKEP  ++  D S 
Sbjct: 181 GTGDAVLMVESEAKELPEDVMLGAVMFGHSGFQTVIDAIIKLAETAAKEPRGLNLPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSVFED 297
           L   +  +  EDL+ +  I  K  R   +D  K K+V    +           +  +F+ 
Sbjct: 241 LFARIKDIAAEDLKAAYTITGKTERRNAVDAAKTKVVEAVITNAGDAAPAATVVGDLFKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +++   R+DGRD +TVR I ++VG+L R HGS+LF RG+TQ +VV TLGT 
Sbjct: 301 LEAEIVRGAIIETGHRIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VD+L GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P+LP   
Sbjct: 361 EDEQFVDALEGTYKAHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLPAKH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAGIAMGL+K+GD F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL+QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGITSLQMDIKIQGITEEIMKVALEQAREGRVHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E+R +LGE  PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVKIAS
Sbjct: 541 AITEARPELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I+AA   I SI   PEV  IY+G VVK ++FGAFV+F GA+DGLVHISQL+  +V
Sbjct: 601 ADGKAIKAAINWINSIAAEPEVGMIYEGTVVKCVEFGAFVNFFGAKDGLVHISQLAPRKV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ+TGK I
Sbjct: 661 AKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQDTGKEI 701


>gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB5]
 gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB5]
          Length = 722

 Score =  876 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/701 (60%), Positives = 550/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPL+LETG++ARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P ++++VA+SAAL LSG PF+GP+  A+V +IN +YVLNP LDE  +  LDL V+
Sbjct: 121 DMENDPDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI  LA+  AKEP  +   D S 
Sbjct: 181 GTSDAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIALAEKAAKEPRELTVIDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  +++++LR +  I  K  R   +  +K+K +++F  E     +++  I  VF++
Sbjct: 241 IEKEMLGLVEQELRAAYAIAVKQERYAAVGKVKEKAIAHFFPEGQEPKYDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRDS+TVR I A+ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQYVDSLAGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL FDDRGK +LSMKVVDQ+TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQDTGEDL 701


>gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226702681|sp|B5ZW24|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 712

 Score =  876 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/701 (66%), Positives = 566/701 (80%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD HTVEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+E E L+SR+IDR IRPLF + YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P V+SMVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ SLDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+E+V+L A++FGH   +PV++AI KLA++ AKEP     +D+S+
Sbjct: 181 GTYDAVLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE EM +  + +LR    I +K  R   +D +K K+ ++F  E     +    I +VF+ 
Sbjct: 241 LEAEMLKHFEAELREGYKITQKADRYAAVDAVKAKVKAHFFPEGVEPKYTAEVIGAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAK+VR  +LD K R+DGRD  TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 LQAKIVRWNILDTKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQYVDSL+G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   
Sbjct: 361 EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LS
Sbjct: 421 QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QA+ GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVKIAS
Sbjct: 541 AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  EIEAAR+ I SI   PE+ +IY+G VVK  DFGAFV+F GARDGLVHISQL++ERV
Sbjct: 601 SSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 AKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEI 701


>gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
 gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
          Length = 715

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/702 (57%), Positives = 523/702 (74%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEW G+ L LETGR+ARQ+DGAVLATYGET+VLAT V+ +S K GQDFFPLT
Sbjct: 1   MFDIKRKTIEWGGKTLTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG + RRE  P++ E L SR+IDR IRPLF K +KNE QVI  V+ H
Sbjct: 61  VNYQEKFYAAGKIPGSFPRREGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P +V+MVAASAAL+LSG+PF GP+  A+V Y+NG+YVLNP LDE  + ++DL V+
Sbjct: 121 DLENDPDIVAMVAASAALVLSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESAMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AV+MVE E  +L+E+ VL  + F H   +PVI+AI +LA+  AKEP      D  +
Sbjct: 181 GTAEAVMMVESEIKELTEEQVLGGVTFAHKGMQPVIDAIIELAEHSAKEPFDFQPDDTDE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---SSWNEGEIVSVFE 296
           +  ++  +I  DLR +  I  K  R   I   K+K ++ F+        ++  ++  VF+
Sbjct: 241 IAAKVKDLIGGDLRAAYQITGKSERHAAIGAAKEKAMTAFAKSEANPEGYDANKLGGVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+A +VR  +L+   R+DGR  + VR I  +VG+L R HGS+LF RG+TQA+ V TLGT
Sbjct: 301 EIEADIVRRSILETGKRIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D+L G     FM+HYNF P + GE  RMG+P RRE+GHG+LA RA+ P+LP  
Sbjct: 361 GDDEQLIDALEGKYFEKFMLHYNFPPFSVGETGRMGSPGRREVGHGKLAWRALRPMLPSY 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSEI ES+GSSSMATVCGSSLALMDAGVP+ KPV+GIAMGL+ + D F +L
Sbjct: 421 EEFPYTIRIVSEIFESNGSSSMATVCGSSLALMDAGVPLKKPVSGIAMGLILEKDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM  AL+QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++  R +LGEF P++E + IP D+IR VIG GGKVIR IVE+TGAK++I +DGT+KIA
Sbjct: 541 KAMTAPRAELGEFAPKIETIKIPVDKIREVIGSGGKVIREIVEKTGAKIDIGEDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++   +I+AA+E I+SI   PEV +IY G+VVK++DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 AAEQTKIDAAKEWIKSIASEPEVGQIYTGKVVKIVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAK SDV+ EG  V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 VAKVSDVLTEGQQVKVKLLGFDDRGKTRLSMKVVDQETGEDL 702


>gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
 gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
          Length = 714

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/701 (60%), Positives = 540/701 (77%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +H  E++WAGR L LETG+IARQ+DGAV A++GET VLATVV  ++ K GQDFFPLT
Sbjct: 1   MFQIHREELDWAGRKLVLETGKIARQADGAVFASWGETTVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF   Y+N+TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           DLE+ P +++MVAASAAL LSG+PF GPV  A+V YINGQ  LNP ++E +   LDL V+
Sbjct: 121 DLENDPDILAMVAASAALTLSGIPFMGPVGAARVGYINGQLKLNPTIEEMKLSVLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSEDV+L A++ GH   +PVI+AI +LA+  AK+P  ++  D S+
Sbjct: 181 GTSDAVLMVESEAQELSEDVMLGAVMTGHRGFQPVIDAIIRLAERAAKDPRDLNVADKSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +   ++ + + +LR +  +  K  R   +D +K K+ +    E   + +++  +   F D
Sbjct: 241 VTAAVAAIAEAELRTAYKLTVKQERYAAVDAVKAKVFAALLPEGGEAKFSKEHVAEAFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  VR+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LQAKVVRWNILDDGVRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VDSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  A
Sbjct: 361 EDEQFVDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ KP AGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM +AL QA+ GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALAQARDGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ SR +LGEF PR+E + I  D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTTSRAELGEFAPRIETLKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI   PEV +IY+G VVK  DFGAFV+F GA+DGLVHISQL+ +RV
Sbjct: 601 SDANSIKAAINWIKSIASDPEVGQIYEGTVVKTADFGAFVNFFGAKDGLVHISQLAKQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGD V VKLL FDDRGK++LSM+VVDQ TG+ +
Sbjct: 661 NKTTDVVKEGDKVKVKLLGFDDRGKVRLSMRVVDQQTGEDL 701


>gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
 gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
          Length = 714

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/701 (60%), Positives = 552/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VE++W GRPLKLETG++ARQ+DGAV+ATYGETVV+ATVV  ++ K+G DF PLT
Sbjct: 1   MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A G+IPGGY +RE RP+E E L+SR+IDR IRPLF K Y+ +TQVI+  + H
Sbjct: 61  VNYQEKTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D+E+ P +V+MVAASAAL LSG+PF GP+  A+V ++N +++LNP LDE   + LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+V+L A++FGH   +PVI+AI  LA+  AKEP  I++ D S+
Sbjct: 181 GTADAVLMVESEAKELPEEVMLGAVMFGHRHFQPVIKAIIDLAEKAAKEPREIETIDNSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E++M  + + +LR +  IP K  R   +  +KKK++ +F  E     +++  I  VF++
Sbjct: 241 IEKDMRAVGEAELRKAYAIPVKQDRYAAVGAVKKKVMDHFFPEGQEPKFDKLRIAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR  +LD  +R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEADVVRNNILDTGLRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKDGRIHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E++ IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++   I AA + I+SIT  PEV +IY G VVKVM+FGAFV+F G +DGLVHISQL+  RV
Sbjct: 601 ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAANRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEGD V VKLL  DDRGK++LSMK V+Q TG+ +
Sbjct: 661 QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVNQETGEDL 701


>gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3]
          Length = 733

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/701 (63%), Positives = 569/701 (81%), Gaps = 4/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA++ATYGETVVLATVV  ++ K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGY +RE+RP+E+E LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYFKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L EDV+L+A++FG    +PVI AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAHELPEDVMLNAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M +MI++DLR +  I +K  R   ID LK+K+++ F   + E+  +N  +I +VF+
Sbjct: 241 LENNMLKMIEQDLRDTYTITDKQKRHAAIDLLKEKVINNFIPEAEENCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++QAK+VR  +LD   R+DGR+   VR I ++VGL  RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 NLQAKIVRKNILDTGKRIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+EIM IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALARARSELSEFSPRIEIMNIPVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PEV  IY+G VVK+ +FGAFV+F G+RDGLVHISQL++ER
Sbjct: 601 SSDLKTIEAAKHWILSIVDEPEVGSIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK 
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKE 701


>gi|15963997|ref|NP_384350.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti
           1021]
 gi|307306409|ref|ZP_07586153.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           BL225C]
 gi|307319296|ref|ZP_07598725.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           AK83]
 gi|81635311|sp|Q92SW0|PNP_RHIME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15073173|emb|CAC41681.1| Probable polyribonucleotide nucleotidyltransferase [Sinorhizobium
           meliloti 1021]
 gi|306895132|gb|EFN25889.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           AK83]
 gi|306902251|gb|EFN32848.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           BL225C]
          Length = 717

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/703 (67%), Positives = 573/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQVII VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIITVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VV+MVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ +LDL V+
Sbjct: 121 DLENNPDVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+AVLMVE EA +L EDV+L A++FG    +PVI+A+ +LA++ AKEP   + +D S 
Sbjct: 181 GTQEAVLMVESEAKELPEDVMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFNPEDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE  M  + +++LR +  I EK  R   +D +K K+  +F  E   + +    EI +VF+
Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGVENPAHTAEEIAAVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGRD  TVR I A+VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGTD+GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTDAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NIDDDGTVKIA
Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIDDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S  EIEAAR+ I SI   PEV ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ER
Sbjct: 601 SASAKEIEAARKWIHSIVAEPEVGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK +V
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVV 703


>gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
           winogradskyi Nb-255]
 gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 718

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/701 (60%), Positives = 551/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  +S ++G DF PLT
Sbjct: 1   MFNQHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RPTE E L+SR+IDR +RPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +++MVAASAAL LSG PF+GP+  A+V +IN +YVLNP LDE     LDL V+
Sbjct: 121 DMENDPDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEIVDTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+++L A++FGH   +PVI+AI +LA+  AKEP  +   D ++
Sbjct: 181 GTADAVLMVESEAKELSEEIMLKAVMFGHRHFQPVIDAIIELAEKAAKEPRELKVIDDTE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  ++++DLR +  IP K  R   +  +K+K +++F  E     +++  +  VF++
Sbjct: 241 IEKEMLGLVEQDLRAAYAIPVKQDRYAAVGKVKEKALAHFFPEGQEPKYDKLRVAGVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD +TVR+I A+ G+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+DSL+GT +  F++HYNF P + GE  R+G   RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQYIDSLAGTYKETFLLHYNFPPYSVGETGRLGGAKRREIGHGKLAWRAIRPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G+ + +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R +LGE  PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALDRARAELGEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 SDGESIKAAIKWIKSIASDPEVGEIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAAGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDVVKEG  V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTSDVVKEGAKVKVKLLGFDDRGKTRLSMKVVDQETGEDL 701


>gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae
           WSM419]
 gi|187611291|sp|A6UF34|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae
           WSM419]
          Length = 714

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/703 (67%), Positives = 573/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEWAGRPLKLETG+IARQ+DGAVLATYGETVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFETHKVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF + YKN+TQVII VMQH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VV+MVAASAAL LSG+PF GPV GA+V YING+YVLNP LDE D+ +LDL V+
Sbjct: 121 DLENNPDVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSE+++L A++FG    +PVI+A+ +LA++ AKEP   +  D S 
Sbjct: 181 GTQDAVLMVESEAKELSEEIMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFEPDDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE  M  + +EDLR +  I EK  R   +D +K K+  +F  E   + +    EI SVF+
Sbjct: 241 LENAMLSIAEEDLRKAYKITEKAQRYAAVDAVKAKVKEHFLPEGVENPAHTAEEIASVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTKSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +L
Sbjct: 421 EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKIAGITEEIMKVALDQAKHGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SESR QLGEF PR+E+M IP D+IR VIG GGKVIR IVE+TGAK+NIDDDGTVKIA
Sbjct: 541 KAISESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIDDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S  EIEAAR+ I SI   PEV ++Y+G VVK  DFGAFV+F GARDGLVHISQL++ER
Sbjct: 601 SASGKEIEAARKWIHSIVAEPEVGQVYEGTVVKTADFGAFVNFFGARDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK I 
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIA 703


>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
           BJ001]
 gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
           BJ001]
          Length = 745

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/701 (59%), Positives = 530/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DGAV+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELIWGDRKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +VSMVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFSPPENAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E+ +  + + +LR +  I  K  R K +D +K K+V+    +     ++  ++ + F++
Sbjct: 241 VEKAVLDICESELRDAYKITVKQDRYKAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD GIT++QMD+KI GI+E IM +AL QAK GR HIL EM++
Sbjct: 481 DILGDEDHLGDMDFKVAGTDEGITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGVVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAPQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+ I
Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDI 701


>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 715

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/701 (61%), Positives = 543/701 (77%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H  EIEWAGR L LETG+IARQ+DGA+ ATYGET VLATVV  +S+K G DFFPLT
Sbjct: 3   MFEIHREEIEWAGRKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGGY +RE RP+E E L+SR+IDR IRPLF + Y+NETQVI+ V+ H
Sbjct: 63  VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P ++SMVA+SAAL LSG+PF GPV  A+V Y+NGQY +NP LDE    +LDL V+
Sbjct: 123 DLENDPDILSMVASSAALTLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSEDV+L A++ GH+  +PVI+AI +LA+  AKEP  +   D ++
Sbjct: 183 GTSDAVLMVESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKEPRDLILPDKTE 242

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + DLR +  I  K  R   +D +K K+      +   + + +  +  VF D
Sbjct: 243 VEVAVLAIAENDLREAYKITSKQDRYAAVDAVKAKVFGDLLPAEGEAKFPKDLVAEVFHD 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD  +R+DGRD +TVR I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 303 LQAKVVRWNILDNGIRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTG 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ +D+L GT R  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  A
Sbjct: 363 EDEQLIDNLEGTYRERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMLPTPA 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G+ + +LS
Sbjct: 423 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAVLS 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GRLHIL EM+K
Sbjct: 483 DILGDEDHLGDMDFKVAGTEEGITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEMAK 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R +LGEF PR+E + IP ++IR VIG GGKVIR I E+TGAK+NI+DDGTVK+AS
Sbjct: 543 AITGARAELGEFAPRIETLRIPTEKIREVIGTGGKVIREICEKTGAKINIEDDGTVKVAS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I+SI   PEV  IY G VVKV+DFGAFV+F G++DGLVHISQL+  RV
Sbjct: 603 SDGNSIKAAINWIKSIATDPEVGHIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLAKGRV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKTSDVVKEGD V VKLL FDDRGK++LSM++VDQ TG+ +
Sbjct: 663 AKTSDVVKEGDKVKVKLLGFDDRGKVRLSMRLVDQETGEDL 703


>gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
           12614]
 gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
           12614]
          Length = 709

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/696 (61%), Positives = 542/696 (77%), Gaps = 4/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE+EW GRPL LETG++ARQ+DGAV+A+YGET VLATVV  +S K GQDFFPLT
Sbjct: 1   MFDIHRVEVEWGGRPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+  YKN+TQV+I V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++MVA+SAAL LSG+PF GP+ GA+V YING+YVLNP +D+  + +LDL V+
Sbjct: 121 DLENAPDILAMVASSAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L ED++L A++FGH   +PVI+AI KLA+  AKEP  +   D S+
Sbjct: 181 GTNDAVLMVESEAKELDEDIMLGAVMFGHKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           L  ++  M + DL  +  I  K  R   ID  K K+V      ++E  +     +   F+
Sbjct: 241 LFGKVKAMAESDLVAAYKITSKTDRKNAIDAAKAKVVEALITNAAEGEAVESTILGEQFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A++VR  +LD   R+DGRD  TVR IS++VG+L R HGS+LF RG+TQ +VV TLGT
Sbjct: 301 KLEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+D L GT ++ FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P++P  
Sbjct: 361 GEDEQYIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMMPPH 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+KDGD F +L
Sbjct: 421 HEFPYTVRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGDRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E IM +AL QAK GR+HIL EMS
Sbjct: 481 SDILGDEDHLGDMDFKVAGTQDGITSLQMDIKIDGITEEIMKVALGQAKDGRIHILGEMS 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++E+R +LGE  PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVKIA
Sbjct: 541 KAITEARAELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GA+DGLVHISQL+ ++
Sbjct: 601 SADGKAIKAAVNWINSIAAEPEVGMIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLAPKK 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           VAK +DV+KEGD VWVKL+ FD+RGK++LSMKVVDQ
Sbjct: 661 VAKVTDVIKEGDKVWVKLMGFDERGKVRLSMKVVDQ 696


>gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
 gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
          Length = 712

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/700 (60%), Positives = 546/700 (78%), Gaps = 2/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE++W GRPL LETG++ARQ+DGAV+ATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFDIHRVEVDWGGRPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGG+ +RE RP+E+E L SR+IDR IRPLF   YKNETQV++ V+ H
Sbjct: 61  VNYQEKAYAAGRIPGGFFKREGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE++P VV+MV ASAAL +SG+PF GP+ GA+V YING+YVLNP +D+ ++ +LDL V+
Sbjct: 121 DLENAPDVVAMVGASAALTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETNLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSE+V+L A++FGH   +PVI+AI +LA+  AKEP  ++  D S 
Sbjct: 181 GTNDAVLMVESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKAAKEPRELNLPDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           L  ++ ++  E+L  +  I  K  R   +D +K K+V    + E  +     I  +F+  
Sbjct: 241 LFGKVQELANEELGAAYSITAKTERKNAVDAVKAKVVEALVTGEEGAPEANVISDLFKKA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A +VR  +LD   R+DGRD  TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT E
Sbjct: 301 EAAIVRGRILDTGSRIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGE 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ++D L GT++  FM+HYNF P + GE  RMG+P RREIGHG+LA RA++P+LP    
Sbjct: 361 DEQFIDLLEGTKKATFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPMLPAHHD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGL+K+G+ F +LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKEGERFAVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QAK GR+HIL EM+K 
Sbjct: 481 ILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E+R +LGE  PR+E++ IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+ASS
Sbjct: 541 ITEARSELGEHAPRIEVIKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVASS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GARDGLVHISQL+  +VA
Sbjct: 601 DGKAIKAALNWINSIAAEPEVGVIYEGTVVKTVDFGAFVNFFGARDGLVHISQLAPRKVA 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K +DV+KEGD V+VKL+ FD+RGK++LSMKVVDQ TG+ I
Sbjct: 661 KVTDVIKEGDKVFVKLMGFDERGKVRLSMKVVDQETGQEI 700


>gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
           73]
 gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
           73]
          Length = 733

 Score =  871 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/703 (62%), Positives = 571/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA++ATYGETVVLATVV  ++ K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGY +RE+RP E+E LISR+IDR IRPLF + YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYFKRENRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L E+V+L+AI+FG    +PVI AI KLA++ AKEP     ++ S 
Sbjct: 181 GTENAVLMVESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKEPRDFIPENLSV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE+ M +M+++DL+ +  I +K  R   ID LK+++++ F   + E+  +N  +I +VF+
Sbjct: 241 LEKNMLKMVEQDLKDAYTITDKQKRHTAIDVLKEEVINKFMQKTEENCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR+   VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 HLQAKIVRQNILDTGKRIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F IL
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFAIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALTSARSELSEFSPRIEMMNITVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PE+  IY+G VVK+ +FGAFV+F G+RDGLVHISQL++ER
Sbjct: 601 SSDLKTIEAAKHWILSIVDEPEIGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703


>gi|187610327|sp|Q1QS60|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 720

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/701 (59%), Positives = 550/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ ++G DF PLT
Sbjct: 1   MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGGY +RE RP+E E L+SR+IDR +RPLF+  ++NETQVI+ V+ H
Sbjct: 61  VDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P V++MVAASAAL LSG PF GP+  A+V ++N +YVLNP LDE     L+L V+
Sbjct: 121 DMENDPDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSED++L A++FGH   +PVI AI +LA+  AKEP  +   D S 
Sbjct: 181 GTADAVLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVSQADDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           LE+EM  +I+ +LR +  I +K  R   +   K K+++++  E     +++  I +VF+ 
Sbjct: 241 LEKEMLGLIEGELRPAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKLRIAAVFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD++TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G+  RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G  + +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GI+++QMD+KI GI+E IM +AL QA+ GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+AS
Sbjct: 541 ALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++AA + I+SI   PEV +IY+G VVKVM+FGAFV+F GA+DGLVHISQL+  RV
Sbjct: 601 NDGEAMKAAIKWIKSIASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K+SD+VKEGD V VKLL FDDRGK +LSMK VDQ TG+ +
Sbjct: 661 QKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKAVDQQTGEDL 701


>gi|319406539|emb|CBI80181.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. 1-1C]
          Length = 733

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA+LATYGETVVLATVV  +  K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKIPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGYL+RE+RP+E+E LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYLKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L EDV+LDA++FG    +PVI AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           LE++M +MI++DLR    I +K  R   ID LK+++++ F+    ++  +N  +I +VF+
Sbjct: 241 LEKDMLKMIEQDLRDVYTITDKQKRHAAIDLLKEEVINKFTQETEKNCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR+   VR I ++VG+L RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 HLQAKIVRQNILDTGKRIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP++ PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGEQFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALARARSELSEFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PEV  IY+G VVK+ +FGAFV+F G+RDGLVHISQL+ ER
Sbjct: 601 SSDLKTIEAAKNWILSIVDEPEVGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLAVER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703


>gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 733

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/703 (62%), Positives = 570/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H VEIEWAGRPL LETG+IARQ+DGA+LATYGETVVLATVV  ++ K  Q+FFPLT
Sbjct: 1   MFKTHKVEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVGKIPGGYL+RESRP+E+E LISR+IDR IRPLF   YKN+TQVI++V+QH
Sbjct: 61  VNYQEKNYAVGKIPGGYLKRESRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++++A+SAAL LSG+PF GP+  A++ Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA++L EDV+LDA++FG    +PVI AI KLA++ AKEP     +D S 
Sbjct: 181 GTENAVLMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIPEDLSI 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           LE++M +M+++DLR    I +K  R   +D LK+++++ F+    ++  +N  +I +VF+
Sbjct: 241 LEKDMLEMVEQDLRDIYTITDKQKRHAALDFLKEEVINKFTQETEKNCEFNTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGR+   VR I ++VG+L RTHGS+LF RG+TQA+V+ TLGT
Sbjct: 301 QLQAKIVRQNILDTGKRIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE+ R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP++ PVAGIAMGL+K+G  F +L
Sbjct: 421 ESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGKQFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGT+KIA
Sbjct: 541 KALARARSELSEFSPRIEMMNIPVDKIRDVIGAGGKVIREIVEKTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS L  IEAA+  I SI D PEV  IY+G VVK+ +FGAFV+F G+RDGLVHISQL+ ER
Sbjct: 601 SSDLKTIEAAKNWILSIVDEPEVGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLAVER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+D+VKEGD VWVKL+ FD+RGKI+LSMKVVDQ TGK ++
Sbjct: 661 VAKTTDIVKEGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELI 703


>gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
           4-46]
 gi|226702664|sp|B0UEX5|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp.
           4-46]
          Length = 725

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/701 (58%), Positives = 529/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD    E+ W GR L LETG++ARQ+DGAV+A+YGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDTQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +VSMVAASAAL LSG+PF GP+  A+V Y+ GQY LNP + E ++ SLDL V+
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA +L EDV+L A++FGH   +PVIEAI +LA+  AKEP      D ++
Sbjct: 181 GTDAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLTE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+ + ++ + DLR +     K  R   +D +K K+++    E   + +   ++ + F++
Sbjct: 241 VEKAVLEIGEADLREAYRKTVKQERYAAVDAVKAKVMAALVPEGGEAKFEPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD   R+DGRD  TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 VQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP   
Sbjct: 361 DDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+ +G+ + +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E M IP D+IR VIG GGKVIR IVE+TGAK++I D G VKIAS
Sbjct: 541 ALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G VVK M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFVNFFGAKDGLVHISELAPQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK +DVVKEGD V VK L  D+RGKI+LSMKVVDQ TG+ +
Sbjct: 661 AKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDL 701


>gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
 gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
          Length = 748

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/701 (58%), Positives = 527/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DG+V+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + +LR +     K  R   +D +K K+V+    +     ++  ++ + F++
Sbjct: 241 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+ +
Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDL 701


>gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           chloromethanicum CM4]
 gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
 gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           chloromethanicum CM4]
 gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
          Length = 745

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/701 (58%), Positives = 527/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DG+V+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + +LR +     K  R   +D +K K+V+    +     ++  ++ + F++
Sbjct: 241 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+ +
Sbjct: 661 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDL 701


>gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens PA1]
 gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           extorquens PA1]
          Length = 752

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/701 (58%), Positives = 527/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG+ ARQ+DG+V+ATYGET VLATVV  +  K G DF PLT
Sbjct: 8   MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT 67

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 68  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 127

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVAASAAL LSG+PF GP+  A+V Y+NG Y LNP + E  + +LDL V+
Sbjct: 128 DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA 187

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP      + + 
Sbjct: 188 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD 247

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           +E  +  + + +LR +     K  R   +D +K K+V+    +     ++  ++ + F++
Sbjct: 248 VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE 307

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 308 AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG 367

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 368 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 427

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 428 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 487

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG++ GIT++QMD+KI GI+E IM +AL QAK GR HIL EMSK
Sbjct: 488 DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK 547

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGK+IR IVE+TGAK+NI+D G VKIAS
Sbjct: 548 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 608 SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV 667

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+ +
Sbjct: 668 AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDL 708


>gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase/polyadenylase [Bartonella henselae
           str. Houston-1]
 gi|81648398|sp|Q6G5F8|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str.
           Houston-1]
          Length = 733

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/703 (63%), Positives = 570/703 (81%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  +S K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE++YAVG+IPGGYL+RESRP+ENE LISR+IDR IRPLF+  YKN+TQVI++V+QH
Sbjct: 61  VNYQEKSYAVGRIPGGYLKRESRPSENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA +L ED++L A++FGH   +P+++AI KLA++ AK+P     +D S 
Sbjct: 181 GTENAVLMVESEAQELPEDIMLGAVMFGHKGLQPILDAIIKLAEVAAKDPRDFVPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M +M ++D+R +  I +K  R   +D LK ++++ F   + E   ++  +I +VF+
Sbjct: 241 LETAMLEMAEKDIRKAYTITDKQERYAALDALKTEIINKFMPETEEDCKFSVDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR+ +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL+G  +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT++IA
Sbjct: 541 KALTSARAELSEFSPRIEVMNIAVDKIRDVIGTGGKVIREIVEQTGAKINIEDDGTIRIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  +FGAFV+F G+RDGLVHISQL+TER
Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGVIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTTER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           V KT+DVVKEGD VWVKL+ FD+RGK++LSMK+VDQ TGK I+
Sbjct: 661 VTKTTDVVKEGDKVWVKLMGFDERGKVRLSMKIVDQKTGKEII 703


>gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           nodulans ORS 2060]
 gi|254782728|sp|B8IGX3|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060]
          Length = 725

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/701 (58%), Positives = 527/701 (75%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W GR L LETG++ARQ+DGAV+A+YGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           DLE+ P +VSMVAASAAL LSG+PF GP+  A+V Y+  QY LNP + E +  SLDL V+
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L EDV+L A++FGH   +PVIEAI +LA+  AKEP      D S+
Sbjct: 181 GTEAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           +E+ + ++ + DLR +     K  R   +D +K K+++  + E     +    + + F++
Sbjct: 241 VEKAVLEIGEADLREAYKKTVKQERYAAVDAVKAKVMAALAPEEGEAKFEPETVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +QAKVVR  +LD   R+DGRD  TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 VQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP   
Sbjct: 361 DDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE  PR+E M IP D+IR VIG GGKVIR IVE+TGAK++I D G +KIAS
Sbjct: 541 ALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVIKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   IRSI   PE   IY G VVK M+FGAF++F GA+DGLVHIS+L+ +RV
Sbjct: 601 SDAKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFINFFGAKDGLVHISELAPQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK +DVVKEGD V VK L  D+RGKI+LSMKVVDQ TG+ I
Sbjct: 661 AKVTDVVKEGDKVKVKFLGQDERGKIRLSMKVVDQQTGEDI 701


>gi|307942752|ref|ZP_07658097.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
 gi|307773548|gb|EFO32764.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
          Length = 710

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/698 (61%), Positives = 543/698 (77%), Gaps = 3/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE++W GRPL LETG+IARQ+DGAV+ATYGET V+ATVV  +S K GQDFFPLT
Sbjct: 1   MFDIHRVEVDWGGRPLVLETGKIARQADGAVMATYGETKVMATVVSAKSPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+  YKN+TQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVILTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E++P +++MVAASAAL LSG+PF GP+ GA+V YING+YVLNP +D+ ++ SLDL V+
Sbjct: 121 DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPAVDDMEESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L ED +L A++FG    +PVI+AI KLA+  AKEP  +   D S+
Sbjct: 181 GTSEAVLMVESEAKELDEDTMLGAVVFGQKGFQPVIDAIIKLAETAAKEPRELVLPDHSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           L   +  + ++DL+ +  I  K  R   ID  K K+V         ++     +  +F+ 
Sbjct: 241 LFGTIKGIAEDDLKAAYKITSKTERKNAIDAAKAKVVEAVIENGGDAAPEATVVGELFKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +LD   R+DGRD  TVR IS++VG+L R HGS+LF RG+TQ +VV TLGT 
Sbjct: 301 LEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ+VD L GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+HP+LP   
Sbjct: 361 EDEQFVDLLQGTMKEHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMLPAHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAGIAMGL+K+GD F +LS
Sbjct: 421 EFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+++GIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGSENGITSLQMDIKIDGITEEIMKVALAQAKDGRIHILGEMAN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E+R +LGE  PR+E++ IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 AITEARSELGEHAPRIEMLKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GARDGLVHISQL+ ++V
Sbjct: 601 SDGKAIKAAVNWINSIAAEPEVGVIYEGTVVKCVDFGAFVNFFGARDGLVHISQLAPKKV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           AK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TG
Sbjct: 661 AKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETG 698


>gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
           as4aup]
 gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
           as4aup]
          Length = 731

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/702 (62%), Positives = 568/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  +S K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE++YAVG+IPGGYL+RESRP+ENE L+SR+IDR IRPLF + YKN+TQVI++V+QH
Sbjct: 61  VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L ED++L A++FGH   +PV++AI KLA++ AK+P     +D S+
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE+ M +M ++D+R +  I +K  R   ID LK ++++ F   + E   ++  +I +VF+
Sbjct: 241 LEKAMQKMAEQDIRKAYTITDKQERYAAIDALKTEILNKFMPETEEDCKFSADQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD + R+DGR+  TVR I ++V +L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRGNILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  R G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRFGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT+KIA
Sbjct: 541 KALTSARAELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  +FGAF++F G+RDGLVHISQL++ER
Sbjct: 601 SADAKAIEAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFINFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V KT+D+VKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK I
Sbjct: 661 VTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKVVDQKTGKEI 702


>gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
 gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
          Length = 718

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/703 (61%), Positives = 550/703 (78%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETGR+ARQ+DGAVLATYG+T VLAT V  ++ K GQDFFPLT
Sbjct: 1   MFDIHREELDWGGRTLVLETGRMARQADGAVLATYGDTTVLATAVSAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF++ YKN+TQV++ V+ H
Sbjct: 61  VNYQEKAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P VVSMVAASAAL LSG+PF GP+ GA+V +I+ +YVLNP LDE  + +LDL V+
Sbjct: 121 DLENDPDVVSMVAASAALTLSGVPFMGPIGGARVGFIDNEYVLNPTLDEVKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+E+V+L A++FGH   +PVI+AI +LA+  AKEP    + D S 
Sbjct: 181 GTADAVLMVESEAKELAEEVMLGAVMFGHRHFQPVIDAIIRLAEKAAKEPREFAAPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGE-IVSVF 295
           LE E+  +I+ DLR +  I  K  R   +D  K K  +++++   E  +  E + +  V 
Sbjct: 241 LETELRGLIEADLRAAYKIARKQDRYAAVDAAKAKAKAHYAALAAEGQAVPEAQTLSEVL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ++++AK+VR  +LD  VR+DGRD++TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 301 KELEAKIVRWTILDDGVRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP 
Sbjct: 361 TGEDEQFIDSLEGTYKERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPILPP 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR VSEI ES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+ +G+ F +
Sbjct: 421 AHEFPYTLRAVSEILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QAK GR HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTDKGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K L+ +R +LGE  PR+E++ IP D+IR VIG GGKVIR IVE+TGAK+NI+DDGTVK+
Sbjct: 541 AKALTGARAELGEHAPRIEVIQIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKV 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV +IY+G VVKV+DFGAFV+F GA+DGLVH+SQL+ E
Sbjct: 601 ASASGESIKAALNWIKSIASEPEVGQIYEGTVVKVVDFGAFVNFFGAKDGLVHVSQLAKE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RVAK SDVVKEGD V VKLL FD+RGK +LSMKVVDQ TG+ +
Sbjct: 661 RVAKPSDVVKEGDKVKVKLLGFDERGKTRLSMKVVDQATGEDL 703


>gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
 gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
          Length = 709

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/697 (61%), Positives = 540/697 (77%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ HTVEIEW GRPL LE G++ARQ+DG+V+ TYGET V+  VV ++  K   DFFPLT
Sbjct: 3   MFEKHTVEIEWGGRPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+ YA GKIPGG+ +RE+RP+ENE L+ R+IDR IRPLF++ YKN+TQV   V+ H
Sbjct: 63  VNYIEKAYAAGKIPGGFFKREARPSENETLVCRLIDRPIRPLFAEGYKNDTQVTCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E++P +V+M+A SAAL +SG+PF GP+ GA+V  I+G YVLNP +DE  +  LDL V+
Sbjct: 123 DMENNPDIVAMIATSAALTISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPESDLDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EAN LSE+V+L A++FGH E +PVI+A+ +LA+ CAKEP      D SK
Sbjct: 183 GTTDAVLMVESEANVLSEEVMLGAVMFGHEEFQPVIDAVIQLAEKCAKEPRPHTVPDNSK 242

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IVSVFEDI 298
           LE E+++++ + +  +  I +K  R   ID+ K      F SE S+  E      VF+ +
Sbjct: 243 LEGEVTKLVGKAIEKAYTIADKQDRYAAIDEAKATAKDKFLSEESTDEEKTTFGGVFKQV 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           QA VVR  ++  K R+DGRD +TVR I +QVG+L RTHGS+LF RG+TQAIVV TLGT +
Sbjct: 303 QANVVRGSIIKTKKRIDGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLGTGD 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ++D+L+GT + +F++HYNF P + GE  R+G  SRREIGHG+LA RA+  VLP    
Sbjct: 363 DEQFIDALTGTYKENFLLHYNFPPYSVGETGRIGFTSRREIGHGKLAWRAVKAVLPSKED 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYTLR VSEITES+GSSSMATVCG+SLA MDAGVP+  PVAGIAMGL+K+GDDF +LSD
Sbjct: 423 FPYTLRAVSEITESNGSSSMATVCGTSLAFMDAGVPLKAPVAGIAMGLIKEGDDFAVLSD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT++QMD+KI GI+E+IM +AL+QAK GR  ILNEMSK 
Sbjct: 483 ILGDEDHLGDMDFKVAGTAEGITSLQMDIKITGITEDIMKIALEQAKGGRETILNEMSKA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+E R +LGEF PR+E   IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+ASS
Sbjct: 543 LTEGRSELGEFAPRIESFKIPTDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKVASS 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+AA + IRSITD PEV +IY+G VVK +DFGAFV+F GA+DGLVHISQL+ ERV 
Sbjct: 603 DGKAIDAALKWIRSITDDPEVGEIYQGTVVKTVDFGAFVNFFGAKDGLVHISQLADERVG 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           KT+DVV EGD VWVKL+ FDDRGK++LSMKVVDQ TG
Sbjct: 663 KTTDVVNEGDKVWVKLMGFDDRGKVRLSMKVVDQETG 699


>gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           radiotolerans JCM 2831]
 gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 739

 Score =  864 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/701 (59%), Positives = 533/701 (76%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   E+ W  R L LETG++ARQ+DGAV+ATYGET VLATVV  +  K G DF PLT
Sbjct: 1   MFDVQREELMWGDRKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKPGIDFMPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + ++N+TQV++ V+ H
Sbjct: 61  VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178
           DLE+ P +V+MVAASAAL LSG+PF GP+ GA+V YING Y LNP + E  ++ SLDL V
Sbjct: 121 DLENDPDIVAMVAASAALTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEESSLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GTQDAVLMVE EA +LSEDV+L A++FGH   +PVIEAI +LA+  AKEP    + + +
Sbjct: 181 AGTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFKAPENA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IVSVFED 297
            +E+ + ++ + +LR +     K  R   +D +K K+++    E +     E + + F++
Sbjct: 241 DVEKAVLEVCEAELRAAYTKTVKQERYAAVDAVKAKVMAALCPEGAEKFPAEKVKAAFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q+KVVR  +LD   R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 AQSKVVRWNILDSGARIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI PVLP   
Sbjct: 361 EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SL+LMDAGVP+ +PVAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD G+T++QMD+KI GI+E IM +AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTDEGVTSLQMDIKIAGITEEIMKIALAQAKDGRAHILAEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E M IP D+IR+VIG GGKVIR IVE+TGAK+NI+D G VKIAS
Sbjct: 541 ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDTGVVKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I+AA   IRSI   PEV  IY G +VK M+FGAFV+F GA+DGLVHIS+L+ +RV
Sbjct: 601 ADGKAIKAAYNWIRSIVAEPEVGVIYDGTIVKCMEFGAFVNFFGAKDGLVHISELAAQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK  DVVKEGD V VK L  DDRGKI+LSMKVVDQ TG+ I
Sbjct: 661 AKVQDVVKEGDKVKVKFLGQDDRGKIRLSMKVVDQQTGEDI 701


>gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter
           autotrophicus Py2]
 gi|226704833|sp|A7IC03|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter
           autotrophicus Py2]
          Length = 730

 Score =  864 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/703 (59%), Positives = 541/703 (76%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H  E++W GR L LETG++ARQ+DG+VLATYG+T VLATVV  R  K GQDFFPLT
Sbjct: 1   MFDIHREELDWGGRTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE RP+E E L+SR+IDR IRPLF + YK +TQV+I V+ H
Sbjct: 61  VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P VV+MVAASAAL LSG+PF GPV  A+V +I+ +YVLNP +DE  + +L+L V+
Sbjct: 121 DLENDPDVVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKESALELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+++L A++FGH   +PVIEAI KLA+  AKEP      D S+
Sbjct: 181 GTGDAVLMVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKEPRNFQPADVSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE----GEIVSVF 295
           +E ++ ++ + DLR +  I +K  R   +   K K+  Y+        +      +  V 
Sbjct: 241 VESKVREIAEADLRAAYKIKQKQDRYAAVGAAKSKVKKYYEELALDGTKVPTAQVVSDVL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++AK+VR  +LD  +R+DGRD  TVR I ++VG+L R HGS+LF RG+TQA+VV TLG
Sbjct: 301 KALEAKIVRWNILDDGIRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP 
Sbjct: 361 TGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPA 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYTLR+VSEI ES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+ +G+ F +
Sbjct: 421 KHEFPYTLRVVSEILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+E IM +AL QAK GR+HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K L+ +R +LGE  PR+E+M I  D+IR VIG GGKVIR IVE+TGAK+NI+DDGT+KI
Sbjct: 541 AKALTTARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+S   I+AA   I+SI   PEV +IY+G VVKV+DFGAFV+F G++DGLVH+SQ++ E
Sbjct: 601 ASASGDAIKAAINWIKSIASEPEVGQIYEGTVVKVVDFGAFVNFFGSKDGLVHVSQMANE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RVAK SDVVKEGD V VKL+ FD+RGK +LSMKVVDQ TG+ +
Sbjct: 661 RVAKPSDVVKEGDKVKVKLMGFDERGKTRLSMKVVDQTTGEDL 703


>gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase/polyadenylase [Bartonella tribocorum
           CIP 105476]
 gi|189037300|sp|A9IMR9|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum
           CIP 105476]
          Length = 731

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/702 (62%), Positives = 567/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  +S K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE++YAVG+IPGGYL+RESRP+ENE L+SR+IDR IRPLF + YKN+TQVI++V+QH
Sbjct: 61  VNYQEKSYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y NGQYVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L ED++L A++FGH   +PV++AI KLA++ AK+P     +D S 
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE+ M +M ++D+R +  I +K  R   ID LK ++++ F   + E   ++  +I +VF+
Sbjct: 241 LEKAMQEMAEQDIRKAYTITDKQERYAAIDALKTEIINKFMPETEEDCQFSTDQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD K R+DGR+  TVR I ++V +L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRGNILDTKKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+D+L+G  +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYIDALTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QAK GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E++ I  D+IR+VIG GGKVIR IVEQTGAK+NI+DDGT+KIA
Sbjct: 541 KALTSARAELSEFSPRIEVINIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  DFGAF++F G+RDGLVHISQL++ER
Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGAIYQGTVVKTADFGAFINFFGSRDGLVHISQLASER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V KT+D+VKEGD VWVKL+ FD+RGK++LSMK VDQ TGK +
Sbjct: 661 VTKTTDIVKEGDKVWVKLMGFDERGKVRLSMKAVDQKTGKEM 702


>gi|304320664|ref|YP_003854307.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
           bermudensis HTCC2503]
 gi|303299566|gb|ADM09165.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
           bermudensis HTCC2503]
          Length = 708

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/701 (58%), Positives = 535/701 (76%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +     EWAGRPL LETGRIARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFTITKKTTEWAGRPLTLETGRIARQADGAVLATYGETTVLATVVGQKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF+  +KNE QV+  VM H
Sbjct: 61  VNYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAPGFKNEVQVVCTVMSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P VV+M+AASAAL +SG+PF GP+  A+V Y +G+Y++NP   + +GS LDL ++
Sbjct: 121 DLENDPDVVAMIAASAALTISGIPFMGPIGAARVAYKDGEYLVNPTGADLEGSRLDLVMA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA++LSED++L A+I GH   K +I+ I   A+ CAKEP      DFS 
Sbjct: 181 GTADAVMMVESEADELSEDIMLGAVIKGHAAAKEMIDHIISFAEQCAKEPWDYQPPDFSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
            +  + +  +  L  +    +K  R   I + K+      + + ++   +   + ++ + 
Sbjct: 241 QKPRVEEAARSGLAAAYQQTDKTQRVAAIGEAKQAAYDALTGDDAADPMDPAVVATLLKQ 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++++VR  +++ + R+DGRD++TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT 
Sbjct: 301 IESEIVRNAIIEGRPRIDGRDTKTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT + +F++HYNF P + GE  RMG+P RREIGHG+LA RA+  VLP   
Sbjct: 361 DDEQFIDALEGTYKENFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRAVLPSQE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ + VAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYVIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGEQFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+K+ GI+E IM  AL QAK GR+HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGVTSLQMDIKVAGITEEIMQTALGQAKDGRMHILGEMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS SR +LGEF PR+E M IP D+IR+VIG GGKVIR IVE+TGAK+N++DDGT+KIAS
Sbjct: 541 ALSASRGELGEFAPRIETMKIPVDKIRDVIGSGGKVIREIVEKTGAKINVEDDGTIKIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  ++I+AA + IR +TD PEV ++YKG+VVK +DFGAFV+F GARDGLVHISQL+  R 
Sbjct: 601 SEHSQIDAAVKWIRGLTDEPEVGEVYKGKVVKTVDFGAFVNFFGARDGLVHISQLNDGRP 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGD V+VKLL FDDRGK++LSMKVVDQ TGK +
Sbjct: 661 EKTTDVVKEGDEVFVKLLGFDDRGKVRLSMKVVDQETGKDL 701


>gi|239833218|ref|ZP_04681547.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
           LMG 3301]
 gi|239825485|gb|EEQ97053.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
           LMG 3301]
          Length = 714

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/703 (64%), Positives = 561/703 (79%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGETVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVVTVVQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P V+SMVAASAAL +SG+PF GP+ GA+V YING+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENDPDVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +LSE+++L A++FG    +PVI+AI KLA++ AKEP     +D S 
Sbjct: 181 GTSEAVLMVESEAQELSEEIMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQPEDLSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE +M  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKMLAVVENDLRDAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSPEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD +TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGSRIDGRDLKTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKQPFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+++PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K LS SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVKIA
Sbjct: 541 KALSTSREELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+++R
Sbjct: 601 SSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLASDR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK I 
Sbjct: 661 VAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIA 703


>gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
           str. Toulouse]
 gi|81647260|sp|Q6G0P7|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str.
           Toulouse]
          Length = 733

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/702 (62%), Positives = 568/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H +EIEWAGRPL LETG+IARQ+DGAV+ATYGET+VLATVV  ++ K  QDFFPLT
Sbjct: 1   MFKTHKIEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YAVG+IPGGYL+RESRPTE+E LISR+IDR IRPLF+  YKN+TQVI++V+Q+
Sbjct: 61  VNYQEKFYAVGRIPGGYLKRESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P +++M+A+SAAL LSG+PF GP+ GA+V Y N QY+LNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILAMIASSAALTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +L ED++L A++FGH   +PV++AI KLA++ AK+P     +D S 
Sbjct: 181 GTESAVLMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFIPEDLSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE  M +M+++D+R +  I +K  R   ID LK ++++ F   + E+  ++  +I +VF+
Sbjct: 241 LETAMLEMVEQDIRKAYTITDKQERSTAIDVLKTEIINKFMSETEENCKFSADQIATVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR+ +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 QLQAKIVRSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+G  +  F++HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQYVDSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R VSEITES+GSSSMATVCG+SLALMDAGVP+ +P+AGIAMGL+K+G+ F IL
Sbjct: 421 ESFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFAIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++GITA+QMD+KI GI+E IM +AL+QA+ GR+HILNEM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTNNGITALQMDIKIDGITEEIMKIALEQARDGRIHILNEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R +L EF+PR+E+M I  D+IR+VIG GGKVIR IVEQTGAK+NI+D+GT+KIA
Sbjct: 541 KALTSARDELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGTIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    IEAA+  I SI D PEV  IY+G VVK  +FGAFV+F G+RDGLVHISQL+TER
Sbjct: 601 SADAKTIEAAKRWIHSIVDEPEVGGIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTTER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V KT++VVKEGD VWVKL+ FD+RGK++LSMK+VDQ TGK I
Sbjct: 661 VTKTTNVVKEGDKVWVKLMGFDERGKVRLSMKIVDQQTGKEI 702


>gi|114705224|ref|ZP_01438132.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
           HTCC2506]
 gi|114540009|gb|EAU43129.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
           HTCC2506]
          Length = 711

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/702 (62%), Positives = 565/702 (80%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEI+WAGR L LETG+IARQ+DGAVLATYGETVV+ATVV ++  K G DFFPLT
Sbjct: 1   MFNSHKVEIDWAGRRLTLETGKIARQADGAVLATYGETVVMATVVSEKQPKAGFDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L SR+IDR IRPLF++ YKN+TQV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAEGYKNDTQVVLTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P VV+MVAASAAL LSG+PF GP+ GA+V YING+Y +NP +DE  + +LDL V+
Sbjct: 121 DLENDPDVVAMVAASAALTLSGVPFMGPIGGARVGYINGEYKVNPNVDEMPESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EA++LSEDV+L A++ GH   +PVI+AI KLA++ AKEP   ++ D S 
Sbjct: 181 GTKDAVLMVESEAHELSEDVMLGAVMEGHRSFQPVIDAIIKLAEVAAKEPREHNAPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           LE EM ++ ++DLR +  I +K  R   +   K+K+V++F     +   + + E+ +VF+
Sbjct: 241 LEGEMLKLAEDDLRAAYKITDKQERTNAVATAKEKVVAHFLPEGEDEPKFTKEEVNAVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD + R+DGR  +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 SLQAKIVRWNILDTQSRIDGRSLDTVRKIVSEVGILPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ+VD+L+GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQFVDALTGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYTLR VSEITES+GSSSMATVCG+SLA MDAGVP+ +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTLRAVSEITESNGSSSMATVCGTSLAFMDAGVPLKRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIQGITEEIMKVALDQAKGGRVHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L E+R +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NIDDDG +KIA
Sbjct: 541 KALGEARSELGEFAPRIEVMQIPTDKIRDVIGSGGKVIREIVEKTGAKINIDDDGVIKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SSS  EIEAA++ I SI   PEV ++Y+G VVK ++FGAFV+F G+RDGLVHISQL   R
Sbjct: 601 SSSGKEIEAAKKWIHSIVAEPEVGEVYEGTVVKTVEFGAFVNFFGSRDGLVHISQLGEGR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ++G+ I
Sbjct: 661 VAKTTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQDSGEEI 702


>gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum
           lavamentivorans DS-1]
 gi|187610324|sp|A7HZ97|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum
           lavamentivorans DS-1]
          Length = 728

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/702 (59%), Positives = 536/702 (76%), Gaps = 3/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +   EIEW GR L LETG+IARQ+DGAVLATYG+T VLATVV +R  K G DFFPLT
Sbjct: 1   MFKITREEIEWGGRTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNETQVI  V+ H
Sbjct: 61  VNYQEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +V+M+A SAAL +SGLPF GP+  A+V YI G+Y LNP +DE  + +LDL V+
Sbjct: 121 DMENDPDIVAMIAVSAALTISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA +LSED++L A++FGH E +PVI+ I ++A+ CAKEP  ID KD S+
Sbjct: 181 GTADAVMMVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKEPRAIDVKDNSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           L  ++ ++ + D+R +  + +K  R + +   K K+ S      + ++ +E ++  VF+ 
Sbjct: 241 LVAKVRELAESDVRAAYGLKDKGQRHEALAAAKDKVKSALCNPEDPNAVSETDVGGVFKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ VVR  +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IESDVVRNSILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ++D+L GT + +F++HYNF P + GE  R+G   RRE+GHG+LA RA+  VLP   
Sbjct: 361 DDEQFIDALEGTYKENFLLHYNFPPFSVGETGRVGFTGRREVGHGKLAWRALRAVLPPKT 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYTLR+VSEITES+GSSSMATVCGSSLA+MDAGVP+ + VAGIAMGL+ +G+ F +LS
Sbjct: 421 EFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM  AL QAK GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTQEGVTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R ++GE+ PR+E++ +P D+IR VIG GGKVIR IVE+TGAKV+I DDGT+K+AS
Sbjct: 541 ALDTARPEMGEYAPRIEVITVPTDKIREVIGTGGKVIREIVEKTGAKVDISDDGTIKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    I  A   I+ I   PEV KIY+G VVK +DFGAFV+F G RDGLVHISQ++  RV
Sbjct: 601 SDGESIRKAIAWIQGIVAEPEVGKIYEGTVVKAVDFGAFVNFFGPRDGLVHISQMAPTRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            + SDVVKEGD V VKLL FDDRGK++LSMK V+Q TG+ IV
Sbjct: 661 EQVSDVVKEGDKVKVKLLGFDDRGKVRLSMKHVNQETGEEIV 702


>gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
 gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
          Length = 711

 Score =  859 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/701 (55%), Positives = 520/701 (74%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF VH  EIEW GR L LETG+IARQ++GAVL TYG+T VL T V  ++ K G DFFPLT
Sbjct: 9   MFTVHRKEIEWGGRKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RPTE E L+SR+IDR IRPLF+  ++NETQVI  V+ H
Sbjct: 69  VNYQEKAFAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSH 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +VSMV ASAAL +SG+PF GP+  A+V Y NGQY+LNP +D+ +   LDL V+
Sbjct: 129 DLENDPDIVSMVGASAALTISGIPFLGPIGAARVGYKNGQYILNPTMDQVEDTDLDLVVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT + VLMVE EA +L+E+V+L A++FGH+  +PVI  I  LA+  AKEP  +    +  
Sbjct: 189 GTTEGVLMVESEAKELTEEVMLGAVMFGHSNFQPVINMIIDLAEEAAKEPWDLPEPAYDR 248

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L+  + + +   +  +     K  R +++   K K +   + E  + +   I   F++
Sbjct: 249 KALKARLRETVGAAVEAAYTETVKQSRYEKVGAAKAKALETLAEEFDAQS---IGFEFKE 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A ++R  +L    R+DGRD++TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 306 LEADILRGAVLKTGRRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTS 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP+  
Sbjct: 366 QDEQIIDALEGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKKE 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYTLR+VSE+TES+GSSSMATVCG+SL+LMDAG P+++PVAGIAMGL+K+   F +LS
Sbjct: 426 DFPYTLRVVSEVTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFAVLS 485

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+E IM +AL QAK GRLHIL EM+K
Sbjct: 486 DILGDEDHLGDMDFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMAK 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + E  PR+ ++ IP ++IR+VIG GGKVIR IVEQTGAK++IDDDGTVK+++
Sbjct: 546 ALTGAREGVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIDDDGTVKVSA 605

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
               + +AA E I+ I   PE+  +Y G+VVKV+DFGAFV+F G+RDGLVHIS+L+ +RV
Sbjct: 606 VDQKKSDAAIEWIKGIVAEPEMGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISELAQQRV 665

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K SDVV +GD+V VK++ FDDRGK+KLSMK VDQ TG+ +
Sbjct: 666 GKVSDVVSQGDSVKVKVIGFDDRGKVKLSMKQVDQATGEDL 706


>gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 709

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/696 (56%), Positives = 518/696 (74%), Gaps = 4/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+ T  IEWAGR L LETGR+ARQ++GAVLATYGET VLAT V  + +K G DFFPLT
Sbjct: 1   MFDIQTETIEWAGRTLTLETGRMARQANGAVLATYGETTVLATAVAQKDVKPGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RPT+ E L SR+IDR IRPLF K +KN+TQV+I V+ H
Sbjct: 61  VNYQEKYFAAGKIPGGYFKREGRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMITVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P VV M+ ASAAL LSGLPF GP+  A+V Y +G+Y++NP + E D   LDL V+
Sbjct: 121 DLENDPDVVGMIGASAALCLSGLPFLGPIGAARVGYKDGEYIINPTVAEMDDTELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA +LSE+ +L A++ GH   +PVI+ I +LA+  AK+P   + +D S 
Sbjct: 181 GTSDAVMMVESEAKELSEETMLGAVMAGHEAFQPVIDMIIRLAEKAAKDPWEFEPEDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE---IVSVFE 296
           LE ++  ++ +++  +  I  K  R   +   K+K V+  ++   + +  +   +  V +
Sbjct: 241 LEAKVKALVGDEIAKAYTITNKTERQAAVSAAKEKAVAELAATEENPDGADMVVLKDVLK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A VVR  ++    R+DGR  + VR I ++  +L RTHGS+LF RG+TQA+ VVTLGT
Sbjct: 301 GVEASVVRGGIIKTGKRIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D+L+GT +  F++HYNF P + GE S   AP RREIGHG+LA RA++ V+P  
Sbjct: 361 GEDEQFIDALTGTYKERFLLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRALNAVMPNA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVPI++PV+GIAMGL+KD +   +L
Sbjct: 421 ETFPYTVRLVSEITESNGSSSMATVCGGSLALMDAGVPITRPVSGIAMGLIKDPEGVAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ G+T++QMD+KI GI+++IM  AL QAK GR+HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITKDIMQTALNQAKGGRMHILEEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K LS +R  L E  P++E + IP D+IR+VIG GGKVIR IVE+TGAKV+++D+G +K++
Sbjct: 541 KALSGTREALNEHAPKIETIQIPTDKIRDVIGSGGKVIRQIVEETGAKVDVNDEGLIKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S S   I+AA + I+ +T  PEV +IYKG+VVKV+DFGAFV+F G RDGLVH+SQ+  ER
Sbjct: 601 SVSADSIKAALDWIKGLTAEPEVGEIYKGKVVKVVDFGAFVNFFGPRDGLVHVSQMKNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V    DVV EG  VWVKLL FDDRGK++LSMKVVDQ
Sbjct: 661 VGHPKDVVSEGQEVWVKLLGFDDRGKVRLSMKVVDQ 696


>gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10]
 gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10]
          Length = 710

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/702 (57%), Positives = 514/702 (73%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEWAGRPL +ETGR+ARQ+DGAV+ +YGET VLAT V  +  K G DFFPLT
Sbjct: 1   MFDIQKETIEWAGRPLTIETGRVARQADGAVMVSYGETTVLATAVGVKQAKPGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RPT+ E L SR+IDR IRPLF K +KNE QV++ V+ H
Sbjct: 61  VNYQEKYFAAGKIPGGFFKREGRPTDKETLTSRLIDRPIRPLFVKGFKNEVQVMLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V M+ ASAAL+LSGLPF GP+  A+V Y +G+YV+NP  DE D   LDL V+
Sbjct: 121 DLENDPDIVGMIGASAALVLSGLPFMGPIGAARVGYKDGEYVINPPCDEMDDSELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAV+MVE EA +LSE+V+L A++ GH   +PVI+ I KLA+  AKEP      D S 
Sbjct: 181 GTQDAVMMVESEAKELSEEVMLGAVMAGHKAFQPVIDMIIKLAERAAKEPWDYAPADHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
            E ++  +I +DL  +  I +K  R K +   K K V             +   +  V +
Sbjct: 241 EEAKVRDLIGDDLAAAYTIVDKTERYKAVGAAKDKAVEALLQTEERPDGIDMTTLKDVMK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +++ +VR  ++    R+DGR  + VR I ++ G+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 AVESSIVRGGIIKTGKRIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D+L+GT +  FM+HYNF P + GE S   AP RREIGHG+LA RA+  VLP  
Sbjct: 361 GEDEQFIDALTGTYKERFMLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRAVKAVLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG+SL++MDAGVPI++PV+GIAMGL+KD +   +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGASLSMMDAGVPITRPVSGIAMGLIKDPEGIAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI E IM  AL QA  GRLHIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGVTSLQMDIKIAGIDEEIMKTALAQASGGRLHILEEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L E+R +LGEF PR+E + IP D+IR+VIG GGKVIR IVE TGAKV+++DDG +K++
Sbjct: 541 KALGEARTELGEFAPRIETITIPTDKIRDVIGSGGKVIREIVETTGAKVDVNDDGVIKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+AA + I  +T  PE  +IYKG+VVKVMDFGAFV+F G +DGLVH+SQL  ER
Sbjct: 601 SSDGASIKAALDWIHGLTAEPEEGQIYKGKVVKVMDFGAFVNFFGPKDGLVHVSQLKAER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V   SDVVKEG  V+VKLL FDDRGK++LSMK++DQ TG+ I
Sbjct: 661 VNHPSDVVKEGQEVYVKLLGFDDRGKVRLSMKIIDQETGEEI 702


>gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           ORS278]
 gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278]
          Length = 719

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/701 (60%), Positives = 548/701 (78%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF  H+VEI+W GRPLKLETG+IARQ+DGAV+ATYGETVVLATVV  ++ +DG DF PLT
Sbjct: 1   MFTKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA G+IPGGY +RE RPTE E L+SR+IDR IRPLF   ++NETQVI+ V+ H
Sbjct: 61  VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D+E+ P +V++VAASAAL LSG+PF+GP+  A+V + N +Y+LNP LDE   + LDL V+
Sbjct: 121 DMENDPDIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L+ED++L A++FGH   +PVI AI +LA+  AK+P  +   D S 
Sbjct: 181 GTSDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPRDVAIIDNSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           +E+EM  + ++DLR +  I  K  R   +  +K+K+++YF  E     +++  + +VF++
Sbjct: 241 IEKEMLGIAEQDLRKAYAIAIKQERYAAVGAVKEKVMAYFFPEGQEPKYDKLRVAAVFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR  +LD   R+DGRD++TVR+I  +VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKIVRWNILDTGKRIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           EDEQY+D+LSGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   
Sbjct: 361 EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT R+VSE+TES+GSSSMATVCGSSLALMDAGVP+ +P AGIAMGL+ +G  F +LS
Sbjct: 421 EFPYTTRVVSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGIT++QMD+KI GI+E IM +AL QA+ GR+HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R +LGE+ PR+E   I  D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVK+AS
Sbjct: 541 ALTAARAELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S    ++AA + I+SI   PEV +IY G VVKVM+FGAFV+F G RDGLVHISQL+ +RV
Sbjct: 601 SDGEAMKAAIKWIKSIASDPEVGQIYDGTVVKVMEFGAFVNFFGTRDGLVHISQLADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGD V VKLL FDDRGK +LSMKVVDQ TG+ +
Sbjct: 661 QKTTDVVKEGDKVKVKLLGFDDRGKTRLSMKVVDQTTGEDL 701


>gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 733

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/700 (60%), Positives = 531/700 (75%), Gaps = 2/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VEI+W GR LKLETG  ARQ+D AV+A YG+T VLATVV  RS+K G DFFPLT
Sbjct: 1   MFDIHRVEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGGY +RE RP+E E L SR+IDR IRPLF + +KNETQV++ V+ H
Sbjct: 61  VNYQERTYAAGKIPGGYFKREGRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE+ P ++ MVAASAAL LSGLPF GP+ GA+V  +NG+ VLNP +DE + S LDL V+
Sbjct: 121 DLENDPDILGMVAASAALTLSGLPFLGPIGGARVGLVNGELVLNPMIDEMKDSALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE EA +L E  +L+A++FGH   +PVI+AI  LA+  AKEP  I   D +K
Sbjct: 181 GTADAVMMVESEAKELPEAQMLEAVVFGHKHMQPVIQAIITLAEKAAKEPWDIKIPDKAK 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDI 298
              E+ ++ ++ L+ +    EK  R   + + KK +    S      NE   +   F+ +
Sbjct: 241 YAGEVKKLAEKTLKQAFSTKEKGKRQDLVAEAKKAISEGISIPADDPNEKVLLSDAFKAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  ++R  +L  K+R+DGRD +TVR I ++V +L RTHGS+LF RG+TQA+VV TLGT E
Sbjct: 301 EMDIMRGDVLKTKMRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGE 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ++DSL GT++  F++HYNF P + GEV RMG+P RREIGHG+LA RAIHP+LP    
Sbjct: 361 DEQFIDSLEGTKKERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+  PVAGIAMGL+K+GD+F++LSD
Sbjct: 421 FPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGDEFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+T++QMD+KI GI+E IM +AL QA  GR+HIL EM+K 
Sbjct: 481 ILGDEDHLGDMDFKVAGTANGVTSLQMDIKITGITEEIMRIALDQAHDGRIHILGEMAKS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+ +R +LGEF PR+E + IP D+IR VIG GG VIR IV ++GAK++I+DDGTVKIAS+
Sbjct: 541 LTGAREELGEFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAKIDIEDDGTVKIASA 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   IE A   IR IT  PEV +IYKG+VVKVM+FGAFV+F GA+DGLVHISQL+  R  
Sbjct: 601 NRESIEKALARIRGITSEPEVGQIYKGKVVKVMEFGAFVNFFGAKDGLVHISQLAPGRPE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
               VVKEG  V+VKLL FDDRGK +LSMK+VDQ TG+ I
Sbjct: 661 SVGAVVKEGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEI 700


>gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
           SXCC-1]
 gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
           SXCC-1]
          Length = 761

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/701 (56%), Positives = 521/701 (74%), Gaps = 7/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V  +S+K GQDFFPLT
Sbjct: 50  MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 109

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+E E+L SR+IDR IRPLF + ++NE QV+  V+ H
Sbjct: 110 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 169

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P VV+++  SAAL LSG+PF GPV  A+V Y NG+YVLNP + +  +  LDL V+
Sbjct: 170 DMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVVA 229

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA +LSEDV+L A+ FGH   +PVI+ I  LA+  AK P  +      +
Sbjct: 230 GTSEGVLMVESEAVELSEDVMLGAVTFGHEAFQPVIDLIIDLAESAAKAPWDLAEPTAEE 289

Query: 240 LE--EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++  +++ +  +  +  +     K VR K++   ++ +++      +   +  I    +D
Sbjct: 290 IKLRKKVDKAGRALIAEAYKERAKQVRYKKVAAAREAILAKIGEADADAAKPMI----KD 345

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVRT +LD   R+DGRD ET+R I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 346 LEADVVRTEVLDTGYRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVATLGTG 405

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ VD+L G  RN+FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   
Sbjct: 406 QDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKD 465

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ DDF +LS
Sbjct: 466 TFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEDDFAVLS 525

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+  IM +AL QA++GRLHIL EM+K
Sbjct: 526 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHILGEMAK 585

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R  +    P++  +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT+ IA+
Sbjct: 586 ALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTIMIAA 645

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  + E A E IR IT  PEV  IY G+VVK  DFGAFV+F G RDGLVHIS+L+  RV
Sbjct: 646 SSDDQAEKAIERIRGITAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISELAEGRV 705

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +KT+DVVK+GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 706 SKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQKTGADI 746


>gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae
           DFL 12]
 gi|187610298|sp|A8LKE7|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae
           DFL 12]
          Length = 711

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/706 (54%), Positives = 507/706 (71%), Gaps = 10/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +EW    L LETG+IARQ+DG V+ATYGET V+A V Y RS K GQDFFPLT
Sbjct: 1   MFNQVKKTMEWGEDTLTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GKIPGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  VI  V+ H
Sbjct: 61  VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DLE+ P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+YVLNP +D+           
Sbjct: 121 DLENDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ FGH + +PVI+ I +LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L  ++    ++ +R +  I +K  R   I   +  +++  S E     +  + S
Sbjct: 241 PADYSELYAKVKAAGEDQMRAAFAITDKQERVTAISAARDAILATLSDEEQ--TDPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ ++R  ++    R+DGR  +TVR I ++VG+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESSILRGDVVKNGRRIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL+QAK GRLHIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITPEIMEKALEQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LSE R Q  E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALSEGRSQFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGI 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A EMI SI   PE  K+Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 599 IKIASANGEAIKKAYEMIHSIVAEPEEGKVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I
Sbjct: 659 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 704


>gi|254503471|ref|ZP_05115622.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
 gi|222439542|gb|EEE46221.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
          Length = 711

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/702 (60%), Positives = 546/702 (77%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+H VE++W GRPL LETG++ARQ+DG+V+ATYGET VLATVV  ++ + GQDFFPLT
Sbjct: 2   MFDIHRVEVDWGGRPLILETGKVARQADGSVMATYGETKVLATVVSAKAPRAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGGY +RE RP+E+E L SR+IDR IRPLF+  YKN+TQV+I V+ H
Sbjct: 62  VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E++P +++MVAASAAL LSG+PF GP+ GA+V YING+YVLNP +D+  + +LDL V+
Sbjct: 122 DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESALDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +L E+ +L A++FGH   + VI+AI KLA+  AKEP    + D S+
Sbjct: 182 GTSDAVLMVESEAKELDEETMLGAVMFGHKGFQTVIDAIIKLAEAGAKEPREFTAADHSE 241

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           L  ++  +  +DL  +  I  K  R   +D  K K+V      ++E  +     +   F+
Sbjct: 242 LLGKVKAIAADDLAAAYKITAKTERKNAVDAAKAKVVEALITNAAEGETVEANVLGEQFK 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A++VR  +LD   R+DGRD  TVR IS++VG+L R HGSSLF RG+TQ +VV TLGT
Sbjct: 302 KLEAEIVRGGILDTGTRIDGRDLSTVRQISSEVGILSRAHGSSLFTRGETQGLVVATLGT 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D L GT ++ FM+HYNF P + GE  RMG+P RREIGHG+LA RAI+P+LP  
Sbjct: 362 GEDEQFIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLPAH 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYTLR+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+K+G+ F +L
Sbjct: 422 HEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKEGERFAVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QAK GR+HIL EM+
Sbjct: 482 SDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRIHILGEMA 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E+R +LGE  PR+E+M IP D+IR VIG GGKVIR IVE+TGAKVNI+DDGTVKIA
Sbjct: 542 NAITEARSELGEHAPRIEMMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIA 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I+AA   I SI   PEV  IY+G VVK +DFGAFV+F GA+DGLVHISQL+ ++
Sbjct: 602 SSDGKAIKAAVNWINSIAAEPEVGVIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLAPKK 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAK +DVVKEGD VWVKL+ FD+RGK++LSMKVVDQ TG+ I
Sbjct: 662 VAKVTDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGQEI 703


>gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           excentricus CB 48]
 gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           excentricus CB 48]
          Length = 760

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/702 (59%), Positives = 539/702 (76%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEWAGR L LETGRIARQ+D AVLATYGET VLATVVY R+ K GQDFFPLT
Sbjct: 11  MFDIKRKTIEWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLT 70

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+ H
Sbjct: 71  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSH 130

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P ++ MVAASAAL LSG+PF GP+ GA+V  IN +YVLNP LD+  + +LDL V+
Sbjct: 131 DMENDPDILGMVAASAALTLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESALDLVVA 190

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDA++MVE EA +LSED +L A++F H   +PVI+AI +LA+  AKEP   +++DFS 
Sbjct: 191 GTQDALMMVESEAQELSEDKMLGALMFAHAGMQPVIDAIIELAEHAAKEPFEFEAEDFSD 250

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEI-VSVFE 296
           +  ++  ++  D+  +     K+ R   + + KKK  +    S E+    E  I  S F+
Sbjct: 251 VVAKIKDLVGPDIIAAYAHKGKHERHAAVGEAKKKAAAVLVKSEENPEGYEPAIFGSAFK 310

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  ++D   R+DGR  + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 311 ECEADVLRRDIIDHGKRVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGT 370

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 371 GEDEQFIDALEGTYKERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSA 430

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYTLR+VSEITES+GSSSMATVCG+SL+LMDAGVP+ +PV+GIAMGL+ + D + +L
Sbjct: 431 EEFPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPVSGIAMGLILEKDGYAVL 490

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM  AL+QA  GRLHIL EM+
Sbjct: 491 SDILGDEDHLGDMDFKVAGTELGITSLQMDIKVPGITEEIMTKALRQANEGRLHILGEMN 550

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S +R +LGEF P++E + I  D+IR VIG GGKVIR IVE+TGAK++I +DGT+KIA
Sbjct: 551 KAISGAREELGEFAPKIETIKIATDKIREVIGSGGKVIREIVEKTGAKIDIGEDGTIKIA 610

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  ++I+AAR+ I+SI   PE+  IYKG+VVKV+DFGAFV+F GA+DGLVHISQ+  E+
Sbjct: 611 ASEQSKIDAARDWIKSIASEPEIGAIYKGKVVKVVDFGAFVNFFGAKDGLVHISQIKNEK 670

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKTSDV+ EGD V VK L FDDRGK KLSMKVVDQ TG+ +
Sbjct: 671 VAKTSDVLSEGDEVKVKFLGFDDRGKTKLSMKVVDQETGEDL 712


>gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
           21756]
 gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
           21756]
          Length = 712

 Score =  854 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/702 (58%), Positives = 528/702 (75%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +S K GQDFFPLT
Sbjct: 1   MFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P ++ MVAASAAL LSG PF GP+  A+V +++G YVLNP LDE  +  +DL V+
Sbjct: 121 DLENDPDILGMVAASAALTLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE E  +LSE++VL  + F H + + VI+AI  LA+  AKEP   + +D   
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---SSWNEGEIVSVFE 296
           ++ EM  ++  D+     I +K  R + I + KKK +          + ++  ++ ++F+
Sbjct: 241 IKAEMKGIVGADIAAGYKITKKQDRYEAIGNAKKKAIEALGKSDTNPAGYDPQKLAAIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A VVR  +LD  +R+DGRD  TVR I  +VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 ELEADVVRRGILDTGLRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PV+GIAMGL+ + D F +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEKDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+  IM  AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPQIMEQALAQAKEGRAHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R  +G+F P++E + IP D+IR VIG GGKVIR IV  TGAKV+I+DDG VK++
Sbjct: 541 KAMDAPREDVGDFAPKIETITIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGIVKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  A+I+AA + I+SITD  EV KIY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 ASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAK SDV+KEG  V VKLL FDDRGK KLSMKVVDQ TG+ +
Sbjct: 661 VAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGEDL 702


>gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum
           JF-5]
 gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
           AIU301]
 gi|187470957|sp|A5FVG2|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum
           JF-5]
 gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
           AIU301]
          Length = 717

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/702 (57%), Positives = 535/702 (76%), Gaps = 6/702 (0%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MFD +   E++W GR L LETG++ARQ+DGAV+A+YG+TVVLATVV  RS+K GQDFFPL
Sbjct: 2   MFDKYFRKELDWGGRKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKPGQDFFPL 61

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQE+ YA G+IPGG+ +RE RPTE E L SR+IDR IRPLF   ++NE QVI+NV+ 
Sbjct: 62  TVNYQEKFYAAGRIPGGFFKREGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLS 121

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
           HDLE+ P +VS+VAASAAL LSG+PF GPV  A++ YI+G+Y+LNP   +  +  LDL +
Sbjct: 122 HDLENEPDIVSLVAASAALTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESRLDLVL 181

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKD 236
           +GT++ VLMVE EA++LSE+ +L A+ FGH   +PVI+AI +LA+  AK+P  +  +S +
Sbjct: 182 AGTEEGVLMVESEAHELSEETMLGAVTFGHAAFQPVIQAIIELAEHAAKDPWPLVEESDE 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L   + ++ +E LR +    EK  R ++I  +K  ++   ++E  S  +     +F+
Sbjct: 242 EKALAARVDELAREGLRAAYAEREKTARHEKIGAVKAAVLETLAAEERSVEKA--KGMFK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A +VR  +LD  +R+DGRD+ TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 300 ELEADIVRNAILDNGIRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ VD++ G  R  F++HYNF P + GE  R+G+P RRE+GHG+LA RAIHP+LP  
Sbjct: 360 AQDEQIVDAIEGEYRERFLLHYNFPPFSVGETGRVGSPGRREVGHGKLAWRAIHPLLPGK 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYTLR+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+   F +L
Sbjct: 420 DKFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDKGFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++G+T++QMD+KI  I+  IM +AL QAK GRLHIL EMS
Sbjct: 480 SDILGDEDHLGDMDFKVAGTEAGVTSLQMDIKITSITPEIMKIALDQAKDGRLHILGEMS 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R  +    PR+ ++ +P D+IR+VIG GGKVIR IVE +G K++I+DDGT+KIA
Sbjct: 540 KALTGAREGVSANAPRITVINVPKDKIRDVIGTGGKVIREIVEYSGCKIDIEDDGTIKIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++S  + + A + IRS+T  PEV +IY G+VVK+ DFGAFV+F GARDGLVHIS+L+  R
Sbjct: 600 ATSDEQAQKAIDRIRSLTSEPEVGQIYTGKVVKIADFGAFVNFFGARDGLVHISELAQGR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VA+T DVVK GDTV VK++  DDRGK+KLSM+VVDQ TG  I
Sbjct: 660 VARTGDVVKVGDTVKVKMIGLDDRGKVKLSMRVVDQATGADI 701


>gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum
           SW]
 gi|226702682|sp|B6IVG3|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum
           centenum SW]
          Length = 707

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/701 (57%), Positives = 530/701 (75%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V   E+ W GR L LETG++ARQ+DGAV A+YG+TVVLAT V  ++ K G DFFPLT
Sbjct: 1   MFKVFRKEMMWGGRKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RPTE E+L SR+IDR IRPLF+  Y+NETQVI+ V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MVA SAAL +SG+PF GP+  A+V Y +GQ+VLNP L++ +   LDL V+
Sbjct: 121 DLENDPDIVAMVATSAALTISGIPFLGPIGAARVGYKDGQFVLNPTLEQVEASDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DF 237
           GT + VLMVE EA +L EDV+L A++FGH E +PVI+ I  LA+M AK+P+ I +   D 
Sbjct: 181 GTTEGVLMVESEAKELPEDVMLGAVMFGHREFQPVIDLIIDLAEMAAKDPMAIPAPAYDK 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             ++  M+ +I +D+R +  +  K  R   I   K K +    +E ++     + SVF++
Sbjct: 241 DAVKTRMAALIGQDVRQAYTLTVKQERYAAIGAAKLKALETMVAEGTAPEA--VASVFKE 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++ ++R  +++   R+DGR +  +R I +QVG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 299 LESDILRGSVIETGKRIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGTN 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ VD+L G  R  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP   
Sbjct: 359 QDEQIVDALEGEYRESFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPLLPTKE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCGSSL++MDAGVP+ +PVAGIAMGL+K+G+ F +LS
Sbjct: 419 TFPYTIRVVSEITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+E IM +AL QAK GR+HIL+EM+K
Sbjct: 479 DILGDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMNK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + +  PR+ ++ IP D+IR+VIG GGKVIR IVEQTGAK++I+DDGTVK+A+
Sbjct: 539 ALNTAREAVNQNAPRITVINIPKDKIRDVIGSGGKVIREIVEQTGAKIDIEDDGTVKVAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 EAA + I+ I   PEV +IY+G+VVK+MDFGAFV+F G+RDGLVHIS+L  ERV
Sbjct: 599 VDGKASEAAIKWIKGIVAEPEVGEIYEGKVVKIMDFGAFVNFLGSRDGLVHISELKNERV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AK +DVVK+GD V VK+L FDDRGK+KLSMKVVDQ TG+ +
Sbjct: 659 AKVTDVVKQGDAVKVKVLGFDDRGKVKLSMKVVDQTTGEDL 699


>gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase/polyadenylase [Paracoccus
           denitrificans PD1222]
 gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222]
          Length = 736

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/707 (53%), Positives = 510/707 (72%), Gaps = 10/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD     I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 22  MFDEVKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 81

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RP+E E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 82  VHYQEKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 141

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V + +G+YVLNP + +        +  
Sbjct: 142 DLVNDPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQR 201

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ FGH   +PVI+ I  LA+  AKEP    
Sbjct: 202 LDLVVAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAKEPFEFA 261

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           S D+S L   +  + + D+R +  I +K  R   I+  K K+++  S E     +  + S
Sbjct: 262 SPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEE--ELLDPNLGS 319

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ ++R  ++D + R+DGRD++TVR I  +VG L RTHGSSLF RG+TQA+VV T
Sbjct: 320 ALKKLESGILRGGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTT 379

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 380 LGTGDDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 439

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 440 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGR 499

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 500 WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHIL 559

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LSE R +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I DDGT
Sbjct: 560 GEMSKALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAKVDISDDGT 619

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 620 IKIASANADSIKKAYDMIYSIVAEPEEGKIYVGKVVKLVDFGAFVNFFGKRDGLVHVSQI 679

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           + +R+   ++V+KEG  V VKLL FDDRGK++L MK+VDQ TG+ I 
Sbjct: 680 AGKRLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEIA 726


>gi|187610326|sp|A1B5P9|PNP_PARDP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 715

 Score =  851 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/707 (53%), Positives = 510/707 (72%), Gaps = 10/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD     I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFDEVKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RP+E E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V + +G+YVLNP + +        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ FGH   +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAKEPFEFA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           S D+S L   +  + + D+R +  I +K  R   I+  K K+++  S E     +  + S
Sbjct: 241 SPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEE--ELLDPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ ++R  ++D + R+DGRD++TVR I  +VG L RTHGSSLF RG+TQA+VV T
Sbjct: 299 ALKKLESGILRGGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGR 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LSE R +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I DDGT
Sbjct: 539 GEMSKALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAKVDISDDGT 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 599 IKIASANADSIKKAYDMIYSIVAEPEEGKIYVGKVVKLVDFGAFVNFFGKRDGLVHVSQI 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           + +R+   ++V+KEG  V VKLL FDDRGK++L MK+VDQ TG+ I 
Sbjct: 659 AGKRLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEIA 705


>gi|329847329|ref|ZP_08262357.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           biprosthecum C19]
 gi|328842392|gb|EGF91961.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           biprosthecum C19]
          Length = 749

 Score =  849 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/703 (57%), Positives = 536/703 (76%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    I+WAGR L LETGRIARQ+D AVLATYGET VLATVVY R+ K GQDFFPLT
Sbjct: 1   MFDIKRKSIDWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNE QV+  V+ H
Sbjct: 61  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+MVAASAAL LSG+PF GP+ GA+V  I+G++VLNP  D+  + +LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTLSGVPFMGPIGGARVGIIDGEFVLNPTGDQVKESTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DA++MVE EA +LSED +L A++F H   +PVIEAI ++A+  AKEP   +++DFS 
Sbjct: 181 GTTDALMMVESEAKELSEDKMLAALMFAHRGMQPVIEAIIEMAEHAAKEPFDFEAEDFSG 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-VSYFSSEH--SSWNEGEIVSVFE 296
           +   +  ++ +D+R +  I  K+ R   +   K K  ++   +E      +  +  + F+
Sbjct: 241 IVTSIKGLVGQDIRDAYTITGKHDRHAAVGAAKSKAGLALLKTEANPDGVDAAKFGAAFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  +++   R+DGR  + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ECEADVLRRDIIEHGKRVDGRPVDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQY+D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQYIDALDGTYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTV 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-GDDFII 475
            +FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+  PV+GIAMGL+ +   ++ I
Sbjct: 421 EEFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKSPVSGIAMGLILEPSGEYAI 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT +GIT++QMD+K+ GI+E IM  AL+QA  GRLHIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTVNGITSLQMDIKVPGITEEIMTKALRQANEGRLHILEEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +S +R +LGEF P++E + I  D+IR VIG GGKVIR IVE+TGAK++I DDGT+KI
Sbjct: 541 NKAISGAREELGEFAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKIDIQDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ++S  ++I+AAR+ ++SI   PEV  IYKG+VVKV+DFGAFV+F GA+DGLVHISQ+S E
Sbjct: 601 SASEQSKIDAARDWVKSIASEPEVGAIYKGKVVKVVDFGAFVNFFGAKDGLVHISQISKE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +V K SDV+ EGD V VK L FDDRGK KLSMKV+DQ TG+ +
Sbjct: 661 KVGKVSDVLNEGDEVKVKFLGFDDRGKTKLSMKVIDQETGEDL 703


>gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC
           49814]
 gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC
           49814]
          Length = 709

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/703 (59%), Positives = 528/703 (75%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+  V I+WAGRPL LETGRIARQ+DGAVLATYGET VLATVV  +      DFFPLT
Sbjct: 1   MFDIQKVTIDWAGRPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGG+ +RE+RPTE E L SR+IDR IRPLF   +KNETQV++ V+ +
Sbjct: 61  VNYQEKYYAAGRIPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D+E+ P VV+MVAASAAL +SG+PF GP+  A+V Y +G+Y++NP LD+   + LDL V+
Sbjct: 121 DMENDPDVVAMVAASAALTVSGVPFMGPIGAARVGYKDGEYIINPTLDQMADTQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDAV+MVE EA +LSE+V+L A++ GH   + VI+ I  LA+  AKEP     +D S 
Sbjct: 181 GTQDAVMMVESEAKELSEEVMLGAVMAGHESFQTVIDGIIDLAERSAKEPWDFQPEDKSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSS-WNEGEIVSVFE 296
              ++ +++  D+  +  I EK  R   + + ++K  +    S E+   W+E     +F+
Sbjct: 241 ELAKLEELVGADISAAYKIKEKAERYAAVGEAREKAAAQLVVSEENPEGWSEAFFKGIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++AKVVR  ++   VR+DGR  + VR I  +V +L RTHGS+LF RG+TQAI V TLGT
Sbjct: 301 SLEAKVVRGDIIKTGVRIDGRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ++D L GT +++FM+HYNF P + GEV RMG   RREIGHG+LA RA+  VLP  
Sbjct: 361 GEDEQFIDGLEGTSKSNFMLHYNFPPYSVGEVGRMGGAGRREIGHGKLAWRALKAVLPSN 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYTLR+VSEITES+GSSSMATVCGSSLA+MDAGVPI++PV+GIAMGL+KD D   +L
Sbjct: 421 EDFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPITRPVSGIAMGLIKDEDGIAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI++ IM  AL+QAK GR HIL+EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGLTSLQMDIKIAGITKEIMQTALEQAKGGRAHILDEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L  SR  +    PR+  M+IP D+IR+VIG GGKVIR IVE+TGAKV+++DDGTVKIA
Sbjct: 541 KALDGSRDDVSGNAPRIVTMSIPTDKIRDVIGTGGKVIRQIVEETGAKVSVEDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I+AA + I  +T  PEV +IY+G+VVKVMDFGAFV+F GA+DGLVHISQL+ ER
Sbjct: 601 AVDKESIDAAYKWIHGLTAEPEVGEIYEGKVVKVMDFGAFVNFFGAKDGLVHISQLAEER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           V +TSDVVKEG TVWVKLL FDDRGK++LSMKVVDQ TGK I 
Sbjct: 661 VKQTSDVVKEGQTVWVKLLGFDDRGKVRLSMKVVDQETGKEIA 703


>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
 gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
          Length = 716

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/703 (53%), Positives = 511/703 (72%), Gaps = 11/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    ++W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNISKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V + +G+YVLNP +D+ QG        
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S+L E +    +E +R +  I +K  R   +  +K+++    S E     +  + S
Sbjct: 241 APDYSELFEVVKGFGEEKMRAAYAISDKQERVAAVSAVKEEIKGQLSEEQLE--DANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++  K R+DGR  + VR I ++  +L RTHGSSLF RG+TQA+VV T
Sbjct: 299 ALKKLESNVLRADVVKNKRRIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV +DG +
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDGGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+E+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 AEMAKALTEA-GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI SI   PE   +YKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANGEAIQKAYDMIYSIVAEPEEGHVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG
Sbjct: 658 ENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 700


>gi|162147166|ref|YP_001601627.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544221|ref|YP_002276450.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|187610270|sp|A9HF35|PNP_GLUDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161785743|emb|CAP55314.1| putative polyribonucleotide nucleotidyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531898|gb|ACI51835.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 712

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/701 (56%), Positives = 515/701 (73%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +  EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V  RS+K GQDFFPLT
Sbjct: 1   MFNYYRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGARSVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E+L SR+IDR IRPLF + ++NE QV+  V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPSEIEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS 179
           DLE+ P + +++  SAAL LSG+PF GPV   +V Y +G Y+LNP L +  + +LDL V+
Sbjct: 121 DLENDPAIAALIGCSAALTLSGIPFFGPVAACRVGYADGAYILNPTLPEMKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA++LSEDV+L A+ FGH   + VI+AI  LA+  AK P  +      +
Sbjct: 181 GTSEGVLMVESEASELSEDVMLGAVTFGHEAFQAVIDAIISLAEHAAKAPWDLAEPSAEE 240

Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L++ +  + +  +  +     K  R K++   K+ +++  ++E           + +D
Sbjct: 241 IALKQRIDTLGRAAIAEAYQERVKQQRYKKVGAAKEAVLAALATEGLDVTAA--KPILKD 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD   R+DGRD +TVR I ++VG+L R HGS+LF RG+TQA+VV TLGT 
Sbjct: 299 LEADVVRSAVLDTGYRIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTA 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   
Sbjct: 359 QDEQVIDALEGEYRTNFMLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKD 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+RIVSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+   F +LS
Sbjct: 419 TFPYTMRIVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDRGFAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+SGITA+QMD+KI  I+  IM +AL QA+ GRLHIL EMSK
Sbjct: 479 DILGDEDHLGDMDFKVAGTESGITALQMDIKITSITPEIMKIALGQARDGRLHILGEMSK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R  +    P++  +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT+ IA+
Sbjct: 539 ALTEGRSDVSSTAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTIMIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  +   A E IR I   PE+  IY G+VVK  DFGAFV+F GARDGLVHIS+L+  RV
Sbjct: 599 SSEDQATRAIERIRGIVAEPELGAIYTGKVVKTADFGAFVNFLGARDGLVHISELAQGRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT+DVV +GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 659 AKTTDVVNQGDVVKVKVLGFDDRGKVKLSMRVVDQQTGADI 699


>gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase/polyadenylase [Granulibacter
           bethesdensis CGDNIH1]
 gi|122326039|sp|Q0BPK3|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 720

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/701 (54%), Positives = 512/701 (73%), Gaps = 4/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E++  GR L LETG+IARQ+DGAVLA  G+T+VL T V  +S K GQDFFPLT
Sbjct: 1   MFNYFRKELDLGGRTLVLETGKIARQADGAVLARLGDTIVLCTAVGAKSAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E+E L+SR+IDR IRPLF + + NE QVI  V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D+E+ P +V+++  SAAL LSG+PF GPV  ++V  +NG +VLNP L++  +  LDL V+
Sbjct: 121 DMENDPDIVALIGCSAALTLSGIPFFGPVAASRVGLVNGAFVLNPTLEQRAESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237
           GT + VLMVE EA +LSED +L A+ FGH   +PVI+AI  LA+  A++P  +     + 
Sbjct: 181 GTAEGVLMVESEAEELSEDQMLAAVEFGHKGFQPVIDAIIALAEHAARDPWTLPEQNPEH 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L++ +++  +  L  +     K +R ++I   KK+++        +  E    S+ +D
Sbjct: 241 VALKQRLNEAGRTLLGNAYQEKVKQLRQEKISAAKKQIIETLG-IGGTPEESIAKSMLKD 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A +VR  +LD  +R+DGRD+ TVR I  +VG+L R HGS+LF RG+TQA+ V TLGT 
Sbjct: 300 LEADIVRNAILDTGIRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALCVATLGTG 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ VD+L+G  R+ FM+HYNF P + GE  RMG+P RREIGHG+LA RA+HPVLP   
Sbjct: 360 QDEQVVDALTGEYRSHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPVLPAKD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYTLR+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+K+   F +LS
Sbjct: 420 AFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIKEDRAFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+T++QMD+KI  I+  IM +ALQQA+ GR+HIL EM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGTEQGVTSLQMDIKITSITTEIMRIALQQARDGRMHILGEMAK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R  +    PR+ ++ +P ++IR VIG GGKVIR IVE +GAK++I+DDGT+KIAS
Sbjct: 540 AITGARGSVAATAPRITVINVPKEKIREVIGTGGKVIREIVEFSGAKIDIEDDGTIKIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S    + A + I+ I   PEV KIY G+VVK  DFGAFV+F G+RDGLVHIS+L   RV
Sbjct: 600 TSEESTQKAIDRIQGIVAEPEVGKIYNGKVVKTADFGAFVNFLGSRDGLVHISELQQGRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KTSDV+  GD V VK+L FDDRGK+KLSM++VDQ TG+ I
Sbjct: 660 NKTSDVINVGDVVKVKVLGFDDRGKVKLSMRLVDQTTGEDI 700


>gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 710

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/701 (55%), Positives = 521/701 (74%), Gaps = 7/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD    EIEW GRPL LETG+IARQ+DGAV+ TYG+TVVL T V  +S+K GQDFFPLT
Sbjct: 1   MFDYFRTEIEWGGRPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+E E+L SR+IDR IRPLF   ++NE QV+  V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+++  SAAL LSG+PF GPV   +V YI+G+YVLNP + +  + +LDL V+
Sbjct: 121 DMENDPAIVALIGCSAALTLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++ VLMVE EA +LSE V+L A+ FGH   + VI+AI +LA+  AK P  +      +
Sbjct: 181 GTEEGVLMVESEAAELSEKVMLGAVTFGHEAFQDVIDAIIELAEHAAKAPWDLVEPSAEE 240

Query: 240 LE--EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++  +++ ++ ++ +  +     K VR K++   K  +++      +         + ++
Sbjct: 241 IKLRKKIEKLGRKAIAEAYQERVKQVRYKKVAAAKDAILAKLDPAEAEA----AKPLLKE 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L+   R+DGRD +T+R I ++VG+L R HGS+LF RG+TQA+V+ TLGT 
Sbjct: 297 LEANVVRSAVLETGHRIDGRDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIATLGTG 356

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   
Sbjct: 357 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKD 416

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+ +PVAGIAMGL+K+ ++F +LS
Sbjct: 417 TFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEEEFAVLS 476

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI  I+  IM +AL QA+ GR+HIL EMSK
Sbjct: 477 DILGDEDHLGDMDFKVAGTENGITALQMDIKITSITPEIMEIALDQARGGRMHILGEMSK 536

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R  +    P++  +++P ++IR+VIG GGKVIR IVE +GAK++I+DDGT+ IA+
Sbjct: 537 ALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTIMIAA 596

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS  + E A E IR I   PE+ KIY G+VVK  DFGAFV+F G RDGLVHIS+L+  RV
Sbjct: 597 SSDEQAEKAIERIRGIVAEPEIGKIYNGKVVKTADFGAFVNFLGPRDGLVHISELAQGRV 656

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKT+DVVK+GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 657 AKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQETGADI 697


>gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
           CB15]
 gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
           NA1000]
 gi|81536356|sp|Q9AC32|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782712|sp|B8GWZ0|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus
           CB15]
 gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide
           adenylyltransferase [Caulobacter crescentus NA1000]
          Length = 712

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/702 (58%), Positives = 532/702 (75%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +S K GQDFFPLT
Sbjct: 1   MFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV++ V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P ++ MVAASAAL LSG PF GP+  A+V +++G YVLNP LDE  +  +DL V+
Sbjct: 121 DLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE E  +LSE++VL  + F H + + VI+AI  LA+  AKEP   + +D   
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHS-SWNEGEIVSVFE 296
           ++ +M  ++  D+  +  I +K  R + +   KKK ++    S E+   ++  ++ ++F+
Sbjct: 241 IKAKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLSDENPTGYDPLKLGAIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A VVR  +LD  +R+DGRD +TVR I  +VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 ELEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PV+GIAMGL+ + D F +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+  IM  AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R  +G+F P++E + IP D+IR VIG GGKVIR IV  TGAKV+I+DDG VK++
Sbjct: 541 KAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  A+I+AA + I+SITD  EV KIY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 ASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAK SDV+KEG  V VKLL FDDRGK KLSMKVVDQ TG+ +
Sbjct: 661 VAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGEDL 702


>gi|144899450|emb|CAM76314.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 721

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/702 (56%), Positives = 515/702 (73%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V   EI W GR L LE G+IARQ+DGAVLATYG+T VL TVV  ++ K G DFFPLT
Sbjct: 3   MFNVTRKEITWGGRKLVLEAGKIARQADGAVLATYGDTTVLCTVVGAKAPKPGIDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF   Y+NETQV+  V+ H
Sbjct: 63  VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVDGYRNETQVVCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+ P +V+MV ASAAL +SGLPF GP+  A+V YING+YVLNP   +  + +LDL V+
Sbjct: 123 DLENDPDIVAMVGASAALTISGLPFMGPIAAARVGYINGEYVLNPTTAQVKESALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DF 237
           GT + VLMVE EA +LSED++L A++ GH E + VI+AI  +A+ CAKEP  + +   + 
Sbjct: 183 GTVEGVLMVESEAKELSEDIMLGAVMHGHREFQAVIQAIIDMAESCAKEPWDVPAPPAEV 242

Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           + +E + +   I  +L  +  I +K  R   +  +K K ++  +    +        +F+
Sbjct: 243 AVVEGKFAAAGIPAELAEAYKIVKKQDRYAAVGAVKVKALALLTE---AAELAVAGPIFK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A VVR  +L   +R+DGRD++TVR I +QVG+L R HGS+LF RG+TQA+VV TLGT
Sbjct: 300 HMEADVVRGNILKTGIRIDGRDTKTVRAIESQVGVLPRAHGSALFTRGETQALVVATLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RA+ P LP  
Sbjct: 360 GQDEQIIDALDGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPCLPTK 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCGSSLA+MDAGVP+ +PVAGIAMGL+K+   F +L
Sbjct: 420 ESFPYTIRVVSEITESNGSSSMATVCGSSLAMMDAGVPMPRPVAGIAMGLIKEDSGFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+TA+QMD+KI  I+E IM +AL QAK GRLHIL EMS
Sbjct: 480 SDILGDEDHLGDMDFKVAGTAEGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMS 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L  +R ++    PR+    IP ++IR VIG GGKVIR I E TGAK++IDDDGT+K+A
Sbjct: 540 KGLDSARTEVSGNAPRIITFNIPKEKIREVIGTGGKVIREICENTGAKIDIDDDGTIKVA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S      + A + IR I   PE+  +Y G+VVKV+DFGAFV+F G+RDGLVHIS++S +R
Sbjct: 600 SVDADAGQRAIDWIRGIVAEPELGVVYTGKVVKVVDFGAFVNFLGSRDGLVHISEISRDR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DV+K+GD+V VK+L FDDRGK+KLSMK VDQ TG+ I
Sbjct: 660 VAKTADVLKQGDSVKVKVLGFDDRGKVKLSMKCVDQETGEDI 701


>gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase/polyadenylase [Ruegeria sp. TM1040]
 gi|123077834|sp|Q1GKK5|PNP_SILST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|99036199|gb|ABF62811.1| polyribonucleotide nucleotidyltransferase [Ruegeria sp. TM1040]
          Length = 711

 Score =  844 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/707 (53%), Positives = 508/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V T  ++W    L LETG++ARQ+DG V+AT GET V+A V Y R  K GQDFFPLT
Sbjct: 1   MFNVTTKTMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   +   K+++++  + E     +G + S
Sbjct: 241 PPDYSDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKEEIIASLTEEQQE--DGNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I  Q GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESVVLRGDVVKNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D  
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+E+  +  +  PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMAKSLTEA-SEFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI +I   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANGEAIQKAYDMIHAIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|259417548|ref|ZP_05741467.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
           TrichCH4B]
 gi|259346454|gb|EEW58268.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
           TrichCH4B]
          Length = 712

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/707 (53%), Positives = 508/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V T  ++W    L LETG++ARQ+DG V+AT GET V+A V Y R  K GQDFFPLT
Sbjct: 1   MFNVTTKTMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V Y +G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   +   K+++++  + E     +G + S
Sbjct: 241 PPDYSDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKEEIIASLTEEQRE--DGNLSS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I  Q GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESVVLRGDVVKNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D  
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+E+  +  +  PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMAKSLTEA-SEFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI +I   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANGEAIQKAYDMIYAIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum
           magneticum AMB-1]
 gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum
           magneticum AMB-1]
          Length = 720

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/702 (56%), Positives = 509/702 (72%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+VH  EI W GR L LETG++ARQ+DGAV+ TYGET VL TVV  +S K G DFFPLT
Sbjct: 3   MFNVHRKEITWGGRKLVLETGKVARQADGAVMVTYGETSVLCTVVGAKSQKPGIDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF+  ++NE QV+  V+ H
Sbjct: 63  VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS 179
           DLE+ P + ++V  SAAL +SGLPF GPV  A+V Y++G YVLNP + D  +  LDL V+
Sbjct: 123 DLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVDGAYVLNPLVGDLPKSELDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA QLSEDV+L A++FGH E + VI+AI  LA+ CAK+P  +       
Sbjct: 183 GTVEGVLMVESEAKQLSEDVMLGAVMFGHREFQAVIQAIIDLAEECAKDPWDLPEPPAEV 242

Query: 240 LE---EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
                +     +  +L  +  I +K  R   +  +KKK ++  +        G    + +
Sbjct: 243 AVVTGKFNDAGVPAELAEAYKIIKKQDRYAAVGAVKKKALALLTEAAEIAVAG---GILK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A VVR  +L   VR+DGRD++TVR I  +VG+L R HGS+LF RG+TQA+VV TLGT
Sbjct: 300 HLEADVVRGNILKTGVRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVVATLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D L+G  R  FM+HYNF P + GE  RMG+P RREIGHG+LA RA+ P LP  
Sbjct: 360 GQDEQIIDQLAGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAMRPCLPAK 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+ KPVAGIAMGL+K+G DF +L
Sbjct: 420 ESFPYTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLPKPVAGIAMGLIKEGTDFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+TA+QMD+KI  I+E IM +AL QAK GR+HIL EM+
Sbjct: 480 SDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITSITEEIMKIALGQAKDGRIHILGEMN 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L  +R  +    PR+  ++IP ++IR VIG GGKVIR I EQTGAK++IDDDGT+K+A
Sbjct: 540 KGLDHARDSVSGNAPRITTISIPKEKIREVIGTGGKVIREICEQTGAKIDIDDDGTIKVA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S      + A + IR I   PE+  IY G+VVKV+DFGAFV+F G+RDGLVHIS+L+ ER
Sbjct: 600 SVDADAAQRAIDWIRGIVAEPELGVIYNGKVVKVVDFGAFVNFLGSRDGLVHISELARER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+DVVK+GD V VK+L FDDRGK+KLSMK VDQ TG+ I
Sbjct: 660 VAKTADVVKQGDVVKVKVLGFDDRGKVKLSMKQVDQTTGEDI 701


>gi|126736200|ref|ZP_01751943.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
 gi|126714366|gb|EBA11234.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
          Length = 710

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/706 (52%), Positives = 504/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNEVKKSVQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           D+ + P +V+M+AASAAL +SG PF GP+   +V + +G+Y+LNP +D+        +  
Sbjct: 121 DMVNDPDMVAMIAASAALTISGAPFRGPIAACRVGFEDGEYILNPEIDDMHNLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIIDLAEDCAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +D+S L   +    ++ +R +  I +K  R   +   K ++V   S E     +G + +
Sbjct: 241 PEDYSDLSAAVKAAGEDKMRAAYAITDKQERTAAVTAAKAEIVEALSEEQQE--DGNLGA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++KV+R  ++    R+DGR  +T+R I ++ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKGLESKVLRGDVVKNGKRIDGRALDTIRPIVSETGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L+G  +++FM+HYNF P + GEV R+  P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALTGMYKSNFMLHYNFPPYSVGEVGRVSGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D +
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVMEDDGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GRLHIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMSKALAQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K L+ +  +     P++E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMGKALTGA-QEFSVHAPKIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +K+AS+    I+ A +MI SI   PE   IYKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKLASNDAEAIKKAYDMIHSIVAEPEEGVIYKGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +R+   SDV+KEG  VWVKLL FDDRGK++L+MK+VDQ TG+ I
Sbjct: 658 ENKRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLAMKMVDQETGEEI 703


>gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
 gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
          Length = 710

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/706 (52%), Positives = 502/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+DG V+AT GET V+A V + ++ K+GQDFFPLT
Sbjct: 1   MFNETKKSIQWGEETLTLETGKIARQADGTVIATLGETSVMAAVTFAKTQKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+YVLNP +D+ QG        
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYEDGEYVLNPTVDDMQGLRNNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PV++ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVVDLIIDLAEDSAKEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L E +    +E +R +  I +K  R   I   K ++ +  + E     +  + +
Sbjct: 241 PPDYSALYEAVKAAGEEKVRAAYAISDKQERVAAISAAKDEIKASLTEEQLE--DPNLGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I ++  +L RTHGS+LF RG+TQA+VV T
Sbjct: 299 ALKKLESAVLRGDVVKNGRRIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D  
Sbjct: 419 PPATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL+QAK GR+HIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALEQAKAGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++E+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMAKAITEA-ADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  K+YKG VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIQKAYDMIYSIVAEPEEGKVYKGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +R+   SD +KEG  VWVKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENKRLNHPSDALKEGQEVWVKLLGFDDRGKVRLSMKVVDQETGEEM 703


>gi|149913069|ref|ZP_01901603.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
 gi|149813475|gb|EDM73301.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
          Length = 712

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/700 (52%), Positives = 494/700 (70%), Gaps = 11/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 2   MFKEVKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 62  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVSGFKHEVLVMCTVLSH 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+Y+LNP +++           
Sbjct: 122 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYSDGEYILNPDVEDMHDLRNNPDQR 181

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSED +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 182 LDLVVAGTKDAVMMVESEAYELSEDEMLGAVTFAHEQIQPVIDLIIDLAEDTAKEPFDFS 241

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L + +    ++ +R +  I +K  R   +   K+ + +  S E     +  + S
Sbjct: 242 PPDYSALYDAVKAAGEDKVRAAYAITDKQERTAAVSAAKEAIKASLSEEQLE--DPNLGS 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A V+R  ++    R+DGR  +TVR I ++ GLL RTHGS+LF RG+TQA+VV T
Sbjct: 300 ALKKLEASVLRGDVVKTGKRIDGRSLDTVRQIVSETGLLPRTHGSALFTRGETQALVVTT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GE  R+G P RRE+GHG+LA RA+  VL
Sbjct: 360 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREVGHGKLAWRALQAVL 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D +
Sbjct: 420 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGE 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 480 YAVLTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMKKALAQAKDGRLHIL 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           NEMS  L+E+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 540 NEMSNALTEA-GDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A EMI SI   PE   IYKG VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 599 IKIASPNSEAIQKAYEMIHSIVAEPEEGGIYKGTVVKIVDFGAFVNFFGKRDGLVHVSQI 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
              R+   SDV+KEG  VWVKLL FDDRGK++LSMK+VDQ
Sbjct: 659 ENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKLVDQ 698


>gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31]
 gi|189037303|sp|B0T175|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31]
          Length = 716

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/702 (57%), Positives = 524/702 (74%), Gaps = 4/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    IEW G+ L LETGRIARQ+DGAVLAT GETVVLAT V+ +  K GQDFFPLT
Sbjct: 1   MFEIMRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+TYA GKIPGG+ +RE RP+E E L+SR+IDR IRPLF K +KNE QV+  V+QH
Sbjct: 61  VNYIEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P +V+M AASAAL++SG PF GP+ G +V Y+N +Y+LNP LDE  +  +DL V+
Sbjct: 121 DLENDPDIVAMCAASAALVISGAPFMGPIGGCRVGYVNDEYILNPTLDELKESKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE E  +LSE++VL  + F H   + VI  I +LA+  AKEP     +D   
Sbjct: 181 GTADAVMMVESEIQELSEEIVLGGVSFAHKSMQAVINGIIELAEHAAKEPFDFQPEDTDA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFE 296
           L+ E+ + +  DL  +  I  K  R   +   K K V  F+   +  +  +  +++SVF+
Sbjct: 241 LKAEVKKAVGADLADAYTIRAKGDRHAALSAAKSKAVDTFAKSDANPAGIDPLKLISVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A +VR  +LD  +R+DGR  +TVR I  +VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 ELEADIVRRSILDTGIRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ++D+L GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP  
Sbjct: 361 GDDEQFIDALEGTYKEAFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRALRPMLPAK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG+SLA+MDAGVP+ +PV+GIAMGL+ + D F +L
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGASLAMMDAGVPLIRPVSGIAMGLILEKDGFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+T++QMD+KI GI+E IM  AL QAK GR HIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSQGLTSLQMDIKIAGITEEIMKQALAQAKGGREHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R ++G++ P++E + IP D+IR VIG GGKVIR IV  TGAKV+I+D+GTVK++
Sbjct: 541 KAMDAPREEVGDYAPKIETITIPTDKIREVIGTGGKVIREIVATTGAKVDINDEGTVKVS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  A+I+AA + I+SIT   EV  IY G+VVKV+DFGAFV+F GA+DGLVH+SQ+S ER
Sbjct: 601 ASDGAKIKAAIDWIKSITQEAEVGAIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAK SDV+KEG  V VKLL FDDRGK KLSMKVVDQ TG+ +
Sbjct: 661 VAKPSDVLKEGQIVKVKLLGFDDRGKTKLSMKVVDQETGEDL 702


>gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium
           bathyomarinum JL354]
          Length = 769

 Score =  841 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/703 (54%), Positives = 516/703 (73%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   + +K+GQDFFPLT
Sbjct: 1   MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKKVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+  A G+IPGG+ +RE+RPTE E L+SR+IDR +RPLF + + NE  VI  V+  
Sbjct: 61  VNYQEKFSAAGRIPGGFFKREARPTEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD---EDQGSLDLF 177
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V + NG+Y LNP      +D+G LDL 
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIASARVGFRNGEYELNPTQSAALDDEGRLDLV 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KD 236
           V+ T DAV+MVE EA +L+E+ +L A++F H+EC+ VI AI +LA+  AK+P  + S  D
Sbjct: 181 VAATNDAVMMVESEAKELTEEEMLGAVMFAHDECRKVIGAIIELAEQAAKDPWELASGDD 240

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVF 295
            + ++  + QMI +D+  +  + +K  R   +++ ++K+ +++S  E     +   + + 
Sbjct: 241 HADMKSAIKQMIGDDIAKAYKLTDKSARSDALNEAREKVKAHYSSEEFDGQQKMTAIKLV 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +++++VR  +L    R+DGR  + VR I A VGLL RTHGSSLF RG+TQAI   TLG
Sbjct: 301 KKLESEIVRGAILKDGQRIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T++ EQ +D L G   N FM+HYNF P + GEV R G   RREIGHG+LA RA+HPVLP 
Sbjct: 361 TKDAEQMIDGLEGLSYNHFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALHPVLPS 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R++S+ITES+GSSSMATVCG  L++MDAGVPI +PV+GIAMGL+ +GDDF +
Sbjct: 421 HEDFPYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG++SGIT++QMD+K+ GI++ IM  AL+QAK GR HIL EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSESGITSLQMDIKVAGITQEIMAKALEQAKAGRAHILGEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K L  +R  + +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI
Sbjct: 541 TKALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +SS+  EIEAAR+ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  E
Sbjct: 601 SSSNADEIEAARKWIEGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RV K +DVV EG  V VK+L+ D+RGK++LSM+VVDQ TG+ +
Sbjct: 661 RVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 703


>gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
 gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
          Length = 745

 Score =  841 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/703 (58%), Positives = 527/703 (74%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    IEWAGRPL LETGRIARQ+DGAVLATYGETVVLATVVY RS K G DFFPLT
Sbjct: 1   MFDIKRKTIEWAGRPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RP+E E L+SR+IDR IRPLF K +KNETQV+I V+QH
Sbjct: 61  VNYQEKTFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D+E+ P V+ MVAASAAL +SG+PF GP+  A+V  I+G+ VLNP +D+     LDL V+
Sbjct: 121 DMENDPDVLGMVAASAALTISGVPFMGPIGAARVGLIDGELVLNPTVDQIPGSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQDA++MVE EA +LSE+ +L+A++F H   +PVI+AI  LA+  AKEP    ++D S 
Sbjct: 181 GTQDALMMVESEAKELSEEKMLEALMFAHAGMQPVIDAIIDLAEHAAKEPFDFQAEDHSD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           +   + +++ ED++ +   P KY R   +D  KK   +            +  +  + F+
Sbjct: 241 VVTSIKKLVGEDIKAAYTHPGKYDRRSGVDAAKKTAAAALVKTDENPEGVDSSKFAAAFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  +++   R+DGR  + VR I ++VG+L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 301 ECEADVLRRDIIENAHRVDGRALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQY+DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP  
Sbjct: 361 GEDEQYIDSLQGTYKESFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-GDDFII 475
             FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PV+GIAMGL+ +   +F I
Sbjct: 421 EDFPYTIRLVSEITESNGSSSMATVCGSSLALMDAGVPLIRPVSGIAMGLILEPSGEFAI 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI++ IM  AL QA  GRLHIL+EM
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITKEIMKQALTQASAGRLHILDEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           SK +   R +LGE  P++E + I  D+IR VIG GGKVIR IVE+TGAK++I DDGT+K+
Sbjct: 541 SKAMDAPRAELGEHAPKIETIKIAVDKIREVIGSGGKVIREIVEKTGAKIDIGDDGTIKV 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++   +I+AA+  I+SI   PEV  IY G+VVKV+DFGAFV+F GA+DGLVH+SQ++ E
Sbjct: 601 AANDQEKIDAAKAWIQSIASEPEVGTIYSGKVVKVVDFGAFVNFFGAKDGLVHVSQIALE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RVA  +DV+ EG  V VK L FDDRGK KLSMKVVDQ TG+ +
Sbjct: 661 RVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVVDQTTGEDL 703


>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 692

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/691 (53%), Positives = 492/691 (71%), Gaps = 3/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E+++ G+ L LETGR+ARQ+DGAVL T GET+VL T V  R LK GQDFFPLTVNY
Sbjct: 3   IVRKEVDFGGQRLYLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D E
Sbjct: 63  QEKAYAAGRIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           + P + +M+ ASAAL +SG+PF+GP+  A+V Y++G +VLNP      +  LDL V+GT+
Sbjct: 123 NDPDIPAMIGASAALAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAGTR 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
            AVLMVE EA +L E  +L A++FGH   +PVI  I +LA    K P    + +    L+
Sbjct: 183 QAVLMVESEAQELPEATMLSAVMFGHESFQPVIACIEELAAEAGKTPWAWQAPELDPALQ 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E ++Q     LR +  + EK  R K++D+++  ++  F    +      +  V + ++ +
Sbjct: 243 EAITQAALAPLREAYGLVEKQARSKRLDEIRSSLLEQFGGS-AGEQADVVRGVVKKLETQ 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD   R+DGRD  TVR I  +VG++ RTHGS+LF RG+TQA+V+ TLGT+ DEQ
Sbjct: 302 IVRGRVLDGAPRIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            VD+L G  R+ FM+HYNF P +TGE   +G+P RREIGHGRLA+RA+  VLP  ++FPY
Sbjct: 362 IVDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPSESEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           +LRIVSEI ES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+KDG+ + +L+DI G
Sbjct: 422 SLRIVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKDGERYAVLTDILG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT++G+TA+QMD+KI GI+  IM  AL+QA  GRLHIL++M+ VL++
Sbjct: 482 DEDHLGDMDFKVAGTENGVTALQMDIKIDGITREIMATALEQAHAGRLHILSKMNAVLAQ 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL  + PR+  M I PD+IR+VIG GGKVIR + E+TGA ++I DDGTV IAS +  
Sbjct: 542 GRSQLSGYAPRIISMRIHPDRIRDVIGPGGKVIRALTEETGASIDIQDDGTVTIASVNGE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             EAAR  I  +T   EV  IY G+V K+MDFGAFV     RDGL+HISQ+STERV    
Sbjct: 602 AGEAARRRIELLTADVEVGMIYDGKVAKIMDFGAFVTILPGRDGLLHISQISTERVNDVH 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           D VKEG +V VK+L+ D +GKIKLSMK + Q
Sbjct: 662 DYVKEGQSVRVKVLEVDRQGKIKLSMKDIAQ 692


>gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
 gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
          Length = 713

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/707 (52%), Positives = 498/707 (70%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG+IARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKETKKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF   +K+ET V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+++A SAAL +SG PF GP+ G +V +++G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDIVALIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHDLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + KPV + I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVCDLIISLAEDCAKEPFNFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   I   ++ + +  S E     +  + S
Sbjct: 241 PPDYSDLYAAVKAAGEEQMRAAFAIRDKQERTHAISAAREAIKAKLSDEQLE--DQNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ V+R  ++    R+DGR  + +R I  + GLL RTHGSSLF RG+TQA+VV T
Sbjct: 299 AFKKLESTVLRGDVVKNGNRIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+GAP RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGAPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D  
Sbjct: 419 PPATDFPYTVRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F ILSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+  IM  AL+QAK GRLHIL
Sbjct: 479 FAILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKALSGA-AEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  K+Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGESIKKAYDMIWSIVAEPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQVTGEEIV 704


>gi|85706001|ref|ZP_01037097.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
 gi|85669589|gb|EAQ24454.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
          Length = 713

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/707 (52%), Positives = 494/707 (69%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG+IARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKETKKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF   +K+ET V+  V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+A SAAL +SG PF GP+ G +V +++G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHNLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PV + I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVCDLIISLAEDCAKEPFNFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +     E +  +  I +K  R   I   ++ + +  S E  +     + S
Sbjct: 241 PPDYSELYAAVKAAGAEQMHAAFAIRDKQERTHAISAAREAIKAKLSEEQLADEN--LGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ V+R  ++    R+DGR  + +R I  + GLL RTHGSSLF RG+TQA+VV T
Sbjct: 299 AFKKLESSVLRGDVVKNGNRIDGRRLDEIRSIVCETGLLPRTHGSSLFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D  
Sbjct: 419 PPATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F ILSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+  IM  AL+QAK GRLHIL
Sbjct: 479 FAILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K LS +  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMDKALSGA-AEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  K+Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGESIKKAYDMIWSIVAEPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ + 
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQVTGEEVA 704


>gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium
           ATCC 15444]
 gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium
           ATCC 15444]
          Length = 713

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/703 (54%), Positives = 518/703 (73%), Gaps = 4/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +V +EWAGR L +ETG++ARQ+DGAV+  YG+T+VLAT V+ +  K GQDFFPLT
Sbjct: 1   MFNKQSVSLEWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A G+IPGG+ +RE RPTE E L SR+IDR IRPLF   +K+E QV++  + +
Sbjct: 61  VNYQEKYFASGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           DLE+   ++++V ASAAL+LSG PF GP+  A+V Y +GQY++NP + E ++  LDL V+
Sbjct: 121 DLENDADIIALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAV+MVE +A +LSEDV+L A++ GH+  +PVI+AI  LA+  AKEP   +  D S 
Sbjct: 181 GTTDAVMMVESQAAELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAKEPFAYEPPDHSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEI-VSVFE 296
             + +   +  DL  +  I  K  R   I   K K  +    + E       E+  +VF+
Sbjct: 241 ALKSVIDTVGADLSKAYKITAKGERYAAIGAAKDKAKAALLGTDEAPGVMTPEVFKTVFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A VVR  +L    R+DGR  + +R I A+ G L RTHGSSLF RG+TQAI V TLGT
Sbjct: 301 EAEASVVRGDILKTGQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQY+D L GT++  FM+HYNF P + GE  RMG   RREIGHG+LA RA+  VLP+ 
Sbjct: 361 SDDEQYIDGLDGTKKEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKH 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMATVCG SLA+MDAGVP+++PV+GIAMGL+ +G +F +L
Sbjct: 421 EDFPYTIRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT++G+T++QMD+K+ GI+++IM  AL+QAK GR+HIL EM 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQAKGGRMHILGEMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ SR QL E  P++EI+ +P D+IR+VIG GGKVIRGIV++TGAKVNIDDDGTV+I+
Sbjct: 541 KALTASRGQLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAKVNIDDDGTVQIS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I+AA +MI+ IT   EV +IY+G+VV + DFG FV+F G +DGLVH+SQ++ +R
Sbjct: 601 AMDRKSIDAAIKMIKGITAEAEVGEIYEGKVVSMKDFGIFVNFFGPKDGLVHVSQMANKR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +    ++VKEGD VWVKL+ FD+RGK++LSMKVVDQ TGK + 
Sbjct: 661 IGHPKEMVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKELA 703


>gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
           ATCC 49957]
 gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
           ATCC 49957]
          Length = 735

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/702 (55%), Positives = 528/702 (75%), Gaps = 8/702 (1%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MFD +   +I W G+ L LETG++ARQ+DGAV+A  G+T+VL TVV  RS+K GQDFFPL
Sbjct: 1   MFDNYFRKDIAWGGKTLTLETGKVARQADGAVMARLGDTIVLCTVVGARSVKPGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQE+ +A GKIPGG+ +RE RP+E E LISR+IDR IRPLF + ++NE QVI  V+ 
Sbjct: 61  TVNYQEKAFAAGKIPGGFFKREGRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
           HD+E+SP +V++V  SAAL LSG+PF GPV  A+V YI+GQYVLNP L++ + + LDL V
Sbjct: 121 HDMENSPDIVALVGCSAALTLSGIPFFGPVGAARVAYIDGQYVLNPTLEQMKNTQLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT + VLMVE EA++L+E+V+L A+ FGH   +PVIE I +LA+  AKEP  +  +D +
Sbjct: 181 AGTAEGVLMVESEASELTEEVMLGAVTFGHQSFQPVIEGIIELAEKAAKEPWDLPEEDPA 240

Query: 239 KLEEEMS--QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
               +    ++ +  +  +    +K +R  ++ + KK +++  S + ++  +G    + +
Sbjct: 241 VAALKAKLAELGRAPIAEAYKETQKLLRQTKVGEAKKAILAQLSEDEAAMAKG----LLK 296

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++A VVR  +LD  +R+DGRD++TVR I A+VG+L R HGS+LF RG+TQA+ V TLGT
Sbjct: 297 ELEADVVRNAILDTGLRIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALAVATLGT 356

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +D L+G  R +FM+HYNF P +  E  RMG+P RREIGHG+LA RAIHP+LP+ 
Sbjct: 357 GQDEQIIDQLAGEYRENFMLHYNFPPYSVNETGRMGSPGRREIGHGKLAWRAIHPLLPEK 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMATVCG+SL+LMDAGVP+ +P AGIAMGL+K+   F +L
Sbjct: 417 EKFPYTMRVVSEITESNGSSSMATVCGTSLSLMDAGVPLKRPCAGIAMGLIKEEKGFAVL 476

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT+ GITA+QMD+KI  I+  IM +AL+QAK GRLHIL EM+
Sbjct: 477 SDILGDEDHLGDMDFKVAGTEQGITALQMDIKITSITPEIMKIALEQAKGGRLHILGEMA 536

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R  +    P++ ++ +P D+IR VIG GGKVIR IVE TG K++I+DDGT+KIA
Sbjct: 537 KGLTGARTDVAANAPKITVINVPKDKIREVIGTGGKVIRDIVETTGTKIDIEDDGTIKIA 596

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S    +AA + IR IT  PE+  IY G VVK  +FGAFV+F GA+DGLVHIS+L+ ER
Sbjct: 597 STSPEATQAAIDRIRGITAEPEIGVIYNGTVVKTAEFGAFVNFLGAKDGLVHISELANER 656

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VAKT+D+VK+GD V VK+L FDDRGK+KLSM+VVDQ TG  I
Sbjct: 657 VAKTTDIVKQGDKVKVKVLGFDDRGKVKLSMRVVDQATGADI 698


>gi|294675841|ref|YP_003576456.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
           SB 1003]
 gi|294474661|gb|ADE84049.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
           SB 1003]
          Length = 717

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/706 (52%), Positives = 509/706 (72%), Gaps = 10/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    I+W G  L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNVTKKSIQWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RP+E E L+SR+IDR  RPLF   +KNE  V+  V+  
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPSEKETLVSRLIDRPCRPLFVPGFKNEVLVMATVLSC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V + +G YVLNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGFAHGAYVLNPAMDDMTKLRDNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +L+ED +L A+ FGH + +PVI+ I  LA+  AKEP   D
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELTEDEMLGAVKFGHEQMQPVIDLIIALAEDAAKEPFHFD 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L + +    + ++R +  + +K  R   I      + S  S E     +  + S
Sbjct: 241 PPDYSALLDRVKAAGEAEMRAAFALRDKQERSNAISATVDLIKSKLSEE--DLADINLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ ++R  +++   R+DGRD++TVR I A+VG+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 AIKALESGILRGDIINGGARIDGRDNKTVRPIVAEVGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L+G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALNGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILESDGR 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMQQALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LS  R +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALSAGRQEFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI SI   PE  KIY+G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 599 IKIASANAEAIKKAYDMIYSIVAEPEEGKIYRGKVVKLVDFGAFVNFFGKRDGLVHVSQI 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + +R+   ++ +KEG  VWVKLL FDDRGK++L MK+VDQ TG  +
Sbjct: 659 AGKRLNHPNEALKEGQEVWVKLLGFDDRGKVRLGMKMVDQETGAEL 704


>gi|146278950|ref|YP_001169109.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145557191|gb|ABP71804.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 740

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/707 (52%), Positives = 508/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 27  MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 86

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 87  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 146

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V Y NG+YVLNP +D+ Q         
Sbjct: 147 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 206

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  AKEP    
Sbjct: 207 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAKEPFDFS 266

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S   +   +  + +
Sbjct: 267 PPDYAALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLS--DAELADENLGT 324

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV T
Sbjct: 325 AFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTT 384

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 385 LGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 444

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 445 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGK 504

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 505 WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHIL 564

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 565 GEMSKALSSANS-FSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGV 623

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 624 IKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQI 683

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           + +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I 
Sbjct: 684 ANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIA 730


>gi|187611319|sp|A4WWP0|PNP_RHOS5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 714

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/707 (52%), Positives = 508/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V Y NG+YVLNP +D+ Q         
Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  AKEP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAKEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S   +   +  + +
Sbjct: 241 PPDYAALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLS--DAELADENLGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV T
Sbjct: 299 AFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGK 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALSSANS-FSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           + +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I 
Sbjct: 658 ANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIA 704


>gi|77464694|ref|YP_354198.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           2.4.1]
 gi|126463534|ref|YP_001044648.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332559587|ref|ZP_08413909.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           WS8N]
 gi|123590859|sp|Q3IYT7|PNP_RHOS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611277|sp|A3PNG0|PNP_RHOS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77389112|gb|ABA80297.1| polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           2.4.1]
 gi|126105198|gb|ABN77876.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332277299|gb|EGJ22614.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           WS8N]
          Length = 716

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/706 (52%), Positives = 506/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V +  G+YVLNP +D+ Q         
Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  A EP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAHEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S   +   +  + +
Sbjct: 241 PPDYAALYAKVKSLGETQMRAAFAIREKQDRVNAIDAARAAIKAQLSE--AELADENLGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV T
Sbjct: 299 AFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGK 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALSSANS-FSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I
Sbjct: 658 ANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703


>gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 764

 Score =  836 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/703 (58%), Positives = 532/703 (75%), Gaps = 5/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    I+WAGRPL LETGRIARQ+DGAVLATYGET+VLATVVY R+ K G DFFPLT
Sbjct: 17  MFDIKRKTIDWAGRPLTLETGRIARQADGAVLATYGETIVLATVVYGRAPKPGLDFFPLT 76

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGGY +RE RPTE E L+SR+IDR IRPLF K +KNETQV+I V+QH
Sbjct: 77  VNYQEKTFAAGKIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQH 136

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE+ P +V MVA SAAL LSG+PF GP+  A+V YI+G++VLNP LD+     LDL V+
Sbjct: 137 DLENDPDIVGMVATSAALTLSGVPFMGPIGAARVGYIDGEFVLNPTLDQMPDSQLDLVVA 196

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DA++MVE EA +LSE V+LDA++F H   +PVI+AI ++A+  AK+P    ++D S 
Sbjct: 197 GTSDALMMVESEAKELSEQVMLDALMFAHRGMQPVIDAIIEMAEHAAKDPFDFQAEDHSG 256

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           +  ++  ++ ED++ +   P K+ R + +   KKK  +            +  +    ++
Sbjct: 257 VVTQIQSLVGEDIKAAYTHPGKHARHEAVGAAKKKASAALVKTDENPDGVDSAKFGVAWK 316

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + +A V+R  ++D   R+DGR  + VRDI ++VG+  RTHGS+LF RG+TQAIVV TLGT
Sbjct: 317 ECEAHVLRRDIIDNAHRVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGT 376

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQYVDSL+GT +  F++HYNF P + GE  RMG   RREIGHG+LA RAI P+LP +
Sbjct: 377 GEDEQYVDSLAGTYKEKFLLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRAIRPMLPTS 436

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-GDDFII 475
            +FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVP+ KPV+GIAMGL+ +   +F I
Sbjct: 437 EEFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPLKKPVSGIAMGLILEPSGEFAI 496

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+E IM  A+ QA  GRLHIL+EM
Sbjct: 497 LSDILGDEDHLGDMDFKVAGTRDGITSLQMDIKVAGITEEIMKKAIAQASAGRLHILDEM 556

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K +  +R +LGE+ P++E + +P D+IR++IG GGK+IR IVE+TGAK+NI+DDGTVKI
Sbjct: 557 DKAIDGARTELGEYAPKIESIKVPVDKIRDIIGTGGKIIREIVEKTGAKINIEDDGTVKI 616

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+S   +I+AA+  I SI   PE   IY G+VVKV+DFGAFV+F GA+DGLVH+SQ++ E
Sbjct: 617 AASDQEKIDAAKNWISSIVSEPEPGMIYSGKVVKVVDFGAFVNFFGAKDGLVHVSQIALE 676

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           RVA  +DV+ EG  V VK L FDDRGK KLSMKVVDQ+TG+ +
Sbjct: 677 RVANPADVLSEGQEVKVKFLGFDDRGKTKLSMKVVDQSTGEDL 719


>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
           flagellatus KT]
 gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
          Length = 714

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/696 (50%), Positives = 491/696 (70%), Gaps = 3/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               I +    L LETG IARQ+DGAV+ +YG+TVVL +VV  R +K+GQDFFPLTV+YQ
Sbjct: 4   IKKTITYGQHELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+  VM  D E 
Sbjct: 64  EKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
              + +++ ASAAL +SG+PF GP+  A+V YING+YVLNP   +  + +LDL V+ T+ 
Sbjct: 124 DADIPAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTASQLKETALDLVVAATES 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           AVLMVE EA +L EDV+L ++++GH + + VI AI++LA    KEP      + + +L  
Sbjct: 184 AVLMVESEAKELPEDVMLGSVVYGHEQMQIVISAINELAAEVGKEPWDWAPPEPNTELIA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAK 301
           ++  +   D+  +  I  K  R  ++D+++ +++    +E +S +E  EI S+F +++AK
Sbjct: 244 KVEALAGADINEAYKIKSKSARSSKLDEIRSRVLGELITETTSTSEANEIKSIFHNLEAK 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT  DEQ
Sbjct: 304 VVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP   +F Y
Sbjct: 364 IIDALQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG  L+L+DAGVP+   VAGIAMGL+K+G+   +L+DI G
Sbjct: 424 TIRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAVLTDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+SGITA+QMD+KI GI+  IM +AL QAK GRLHIL  M + + E
Sbjct: 484 DEDHLGDMDFKVAGTESGITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEAVGE 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              +L EF PR+  M I P++IR+VIG GG VIR + E+TG  ++I++DGT+KI  +S  
Sbjct: 544 QPQELSEFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCTSAE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++ I +IT   EV ++Y G V+K++DFGA V     +DGL+HISQ++ +RV   +
Sbjct: 604 AGEEAKKRIEAITAEVEVGQVYDGTVLKLLDFGAIVSLLPGKDGLLHISQIAHQRVNAVA 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           D +KEG  V VK+L+ DD+G+++LS K + +     
Sbjct: 664 DFLKEGQVVKVKVLEVDDKGRVRLSAKALIEAPSAE 699


>gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
           vulgare Y25]
 gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
           vulgare Y25]
          Length = 713

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/707 (53%), Positives = 507/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNQIKKSIQWGDETLTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E LISR+IDR  RPLF + +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTERETLISRLIDRPCRPLFVEGFKHEVLVMATVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V Y NG Y LNP +DE        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIRNKSEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSED +L A++F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEDEILGAVVFAHEQMQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D S L   ++ +  ED+R +  I  K  R   ID    K+ +  + E  + +   + +
Sbjct: 241 PADTSALLAAVTALGGEDMRAAFAIRTKQDRVAAIDAAVAKIKAGLTEEQLADSS--LGA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V + +++ V+R+ ++    R+DGR  + VR I ++ GLL R HGS+LF RG+TQ +VV T
Sbjct: 299 VIKQLESDVLRSDIVKHGRRIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL+++DAGVP+  PVAG+AMGLV + D  
Sbjct: 419 PANTDFPYTIRVVSEITESNGSSSMASVCGGSLSMLDAGVPLKAPVAGVAMGLVLEKDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QA+ GRLHIL
Sbjct: 479 WAVLTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMRKALAQARTGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K L+ +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDGT
Sbjct: 539 GEMAKSLTTANA-FSAHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGT 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASS+   I+ A +MI SI   PE+N IYKG VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASSNGEAIKKAYDMIWSIVAEPEINGIYKGTVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  VWVKLL FDDRGK++LSMK+VDQ TG+ I 
Sbjct: 658 ENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKIVDQATGEEIA 704


>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
           RB2256]
 gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
          Length = 771

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/701 (53%), Positives = 502/701 (71%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IEW G  L LETG++ARQ+DGAV+AT GETVVL  V   +S+KDGQDFFPLT
Sbjct: 1   MFDVKKVSIEWGGETLTLETGKVARQADGAVIATLGETVVLCAVTAAKSVKDGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE   I  V+ +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P +++MVAASAAL +SG+PF GP+  A+V Y+NG+Y+LNP  ++  +G LDL V+
Sbjct: 121 DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNPTDEQVAEGDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T DAV+MVE EAN+LSE+V+L A++F H+ CK V++AI KLA+  AKEP  I S  D +
Sbjct: 181 ATHDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIIKLAEQAAKEPWEIASSDDDA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV-SVFED 297
            L++++ ++I +D+  +  + +K  R   +++ + K    F ++            + + 
Sbjct: 241 ALKDKLRKLIGKDIAAAYKLTDKSARSNALNEARAKAKESFIADGLDPQAVMAGIKIVKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VRT +L +  R+DGR +  +R I A+   L R HGS+LF RG+TQ I   TLGT+
Sbjct: 301 LEAEIVRTAILKEGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L+G     FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 361 DAEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+ S+ITES+GSSSMA+VCG SLA+MDAGVPI +PV+GIAMGL+ +G D+ ILS
Sbjct: 421 EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT MQMD+KI GI+  I   AL QAK GR HIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALAQAKEGRAHILGEMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L E R +L    PR+E M I   +IR+VIG GGKVIR IV  TGAKV+IDD+G +KI+S
Sbjct: 541 ALGEVRTELSAHAPRIETMQIDKAKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S L +IEAAR+ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 601 SDLDQIEAARKWIAGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIRNERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K +DV+ EG  V VK+L+ D RGK++LSM+VVDQ TG  +
Sbjct: 661 EKVADVLSEGQDVKVKVLEIDPRGKVRLSMRVVDQETGAEL 701


>gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
 gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
          Length = 711

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/702 (52%), Positives = 496/702 (70%), Gaps = 11/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNVTKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G YVLNP +D+ Q         
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT++AV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    ++ +R +  I +K  R   +   ++ + +  + E     +  + S
Sbjct: 241 PVDYSDLSAAVKAAGEDAMRAAFAIADKQERTAAVAAARETIKAALTEEQLE--DANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +RDI A+ G+L RTHGSSLF RG+TQ +VV T
Sbjct: 299 ALKGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++FM+HYNF P + GEV R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P +  FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PASTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGRVHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K +S +  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKAISGA-GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDSIKKAYDMIWSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ T
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQET 699


>gi|329113570|ref|ZP_08242350.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
           DM001]
 gi|326697092|gb|EGE48753.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
           DM001]
          Length = 716

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/701 (55%), Positives = 520/701 (74%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    EIEW GRPL LETG++ARQ+DGAV+ TYGETVVL T V  + +K GQDFFPLT
Sbjct: 1   MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKEVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+ENE L+SR+IDR +RPLF + ++NE QVI  V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P + +++  SAAL LSG+PF GPV  A+V + +G ++LNP  ++  +  L+L V+
Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA++LSE+V+LDA+ FGH   +PV++AI  LA+  AKEP  +      +
Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240

Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L +++ +  ++ +  +    +K VR +++   +  +V   +++    +      + +D
Sbjct: 241 IQLRKQVEKAGRKLIADAYKEKQKQVRYEKLKAARAAIVEKLTAD--ELDVAAAKPMIKD 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L    R+DGRD  TVR I  +VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 299 LEADVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTG 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP++P   
Sbjct: 359 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIHPLMPSRK 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVP+ +PVAGIAMGL+K+GDDF +LS
Sbjct: 419 EFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+  IM +AL QA+ GR+HIL EMSK
Sbjct: 479 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E+R  +    P++  M +P ++IR+VIG GGKVIR IVE +GAKV+I DDGT+ IA+
Sbjct: 539 ALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTITIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A + I  I   PE+ +IY G+VVK  DFGAFV+F GARDGLVHIS+L+  RV
Sbjct: 599 ASDDQAQKAIDRINGIVAEPELGRIYDGKVVKTADFGAFVNFLGARDGLVHISELAQGRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGDTV VK++ FDDRGK+KLSM+VVDQNTG  I
Sbjct: 659 GKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699


>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
           adenylyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
           Polynucleotide adenylyltransferase (EC 2.7.7.19)
           [Burkholderia rhizoxinica HKI 454]
          Length = 768

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/697 (48%), Positives = 486/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 47  MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVAAKSAKPGQDFFPLT 106

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 107 VDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSI 166

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +    + +M+ ASAAL +SG+PF GP+  A+V YI+ Q+VLNP   + + S LDL V+
Sbjct: 167 NPDIPADIPAMIGASAALAISGIPFNGPIGAARVAYIDNQFVLNPTRSQSKASKLDLVVA 226

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL E+V+L A++FGH + +  I+AI  L K   K       +    
Sbjct: 227 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVKEGGKPEWDWQPAPKDE 286

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++   +L+ +  I +K  R  ++ ++   + +  + +  +      +   + +
Sbjct: 287 ALIARVTELALAELQAAYQIRQKQQRSAKLKEVYAAVTAKLAEQSVAAGTAVVDAATVGN 346

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A++VR+ +L+ + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA+VV T
Sbjct: 347 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVAT 406

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D++ G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+R++ P L
Sbjct: 407 LGTKGDEQIIDAIEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRSLVPCL 466

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 467 PGDDEFGYTIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 526

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QA+ GRLHIL+
Sbjct: 527 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAREGRLHILD 586

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +  + +QL +F PR+  M I P++IR+VIG GG VIR + E+T   ++I DDG V
Sbjct: 587 KMTSAVPSTNMQLSQFAPRMITMKINPEKIRDVIGKGGSVIRALTEETNTTIDISDDGVV 646

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV +IY+G ++K++DFGA V+    RDGL+HIS+++
Sbjct: 647 TIASTSPEGMAEAKKRIENITAEVEVGQIYEGAILKLLDFGAIVNILPGRDGLLHISEIA 706

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ER+   +D +KEG  V VK++  D++G+++LS+K +
Sbjct: 707 NERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSVKAL 743


>gi|258543487|ref|YP_003188920.1| polynucleotide phosphorylase/polyadenylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634565|dbj|BAI00541.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637623|dbj|BAI03592.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640675|dbj|BAI06637.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643732|dbj|BAI09687.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646787|dbj|BAI12735.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649840|dbj|BAI15781.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652828|dbj|BAI18762.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655884|dbj|BAI21811.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 716

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/701 (55%), Positives = 521/701 (74%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    EIEW GRPL LETG++ARQ+DGAV+ TYGETVVL T V  + +K GQDFFPLT
Sbjct: 1   MFNYFRKEIEWGGRPLILETGKVARQADGAVMVTYGETVVLCTAVGAKDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+ENE L+SR+IDR +RPLF + ++NE QVI  V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P + +++  SAAL LSG+PF GPV  A+V + +G ++LNP  ++  +  L+L V+
Sbjct: 121 DMENDPSIPALIGCSAALTLSGIPFFGPVGAARVGFKDGAFILNPTQEQIKESDLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA++LSE+V+LDA+ FGH   +PV++AI  LA+  AKEP  +      +
Sbjct: 181 GTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKEPWALAEPTKEE 240

Query: 240 --LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L +++ +  ++ +  +    +K VR +++   ++ ++   +++    +      + +D
Sbjct: 241 IQLRKQVEKAGRKLIADAYKEKQKQVRYEKLKAAREAIIEKLTAD--ELDVAAAKPMIKD 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L    R+DGRD  TVR I  +VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 299 LEADVVRSSVLKTGKRIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTG 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP++P   
Sbjct: 359 QDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIHPLMPSRK 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMATVCG SLALMDAGVP+ +PVAGIAMGL+K+GDDF +LS
Sbjct: 419 EFPYTVRVVSEITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLIKEGDDFAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI  I+  IM +AL QA+ GR+HIL EMSK
Sbjct: 479 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARDGRMHILGEMSK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E+R  +    P++  M +P ++IR+VIG GGKVIR IVE +GAKV+I DDGT+ IA+
Sbjct: 539 ALTETRTNVSSTAPKITTMKVPREKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTITIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A + I  I   PE+ +IY G+VVK  DFGAFV+F GARDGLVHIS+L+  RV
Sbjct: 599 ASDDQAQKAIDRINGIVAEPELGRIYDGKVVKTADFGAFVNFLGARDGLVHISELAQGRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            KT+DVVKEGDTV VK++ FDDRGK+KLSM+VVDQNTG  I
Sbjct: 659 GKTTDVVKEGDTVKVKVIGFDDRGKVKLSMRVVDQNTGADI 699


>gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
 gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
          Length = 711

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/702 (52%), Positives = 496/702 (70%), Gaps = 11/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNVTKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G YVLNP +D+ Q         
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIGACRVGFEDGDYVLNPTVDDMQDLRLNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT++AV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKEAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    ++ +R +  I +K  R   +   ++ + +  + E     +  + S
Sbjct: 241 PVDYSDLSAAVKAAGEDAMRAAFAIADKQERTAAVAAARETIKAALTEEQLE--DANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +RDI A+ G+L RTHGSSLF RG+TQ +VV T
Sbjct: 299 ALKGLEASILRGDVVKTGKRIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++FM+HYNF P + GEV R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P +  FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PASTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALAQAKAGRVHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K +S +  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKAISGA-GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDSIKKAYDMIWSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ T
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQET 699


>gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 763

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/700 (53%), Positives = 502/700 (71%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR +RPLF + + NE  VI  VM +
Sbjct: 61  VHYQEKFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V + +G+Y LNP + +  +G LDL V+
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T  AV+MVE EA +L+ED +L A++F H E + VI AI +LA+  AK+P  +D  D  +
Sbjct: 181 ATDTAVMMVESEAKELTEDEMLGAVMFAHAESRKVIGAIIELAEKAAKDPWEVDLTDNTA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++ ++  ++ +D+  +  +  K  R   ++  + K  + FS E        I +  + +
Sbjct: 241 DIKAKLKSIVGDDIAAAYKLTNKSERANALNAARDKAKAAFSEESPQTQMVAIKT-LKKV 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++ +VRT +L    R+DGR    VR I + VG L RTHGS+LF RG+TQ I   TLGT++
Sbjct: 300 ESDIVRTAILKDGQRIDGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKD 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D L G     FM+HYNF P + GEV R GAP RREIGHG+LA RA++PVLP    
Sbjct: 360 AEQMIDGLDGLTYQRFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALNPVLPSKED 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R++S++TES+GSSSMATVCG  L+LMDAGVPI +PV+GIAMGL+ +GDDF +LSD
Sbjct: 420 FPYTIRVLSDVTESNGSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGDDFTVLSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT++QMD+K+ GI+E I   AL QAK GR HIL EM++ 
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEMTRA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L E R +L    PR+E ++I   +IR VIG GGKVIR IV  TGAKV+IDD+G +KI+S+
Sbjct: 540 LGEVRTELSAHAPRIETISIDKSKIREVIGTGGKVIREIVATTGAKVDIDDEGVIKISSA 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            +A+IEAA++ I  I + PEV K+Y G+VV ++DFGAFV+F G RDGLVH+S++  ERV 
Sbjct: 600 DVAQIEAAKKWILGIVEEPEVGKVYNGKVVNIVDFGAFVNFMGGRDGLVHVSEMKNERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K +DVVKEG  V VK+L+ D+RGK++LSM++VDQ TG  I
Sbjct: 660 KPTDVVKEGQEVKVKVLEIDNRGKVRLSMRLVDQETGAEI 699


>gi|254466440|ref|ZP_05079851.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
 gi|206687348|gb|EDZ47830.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
          Length = 703

 Score =  834 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/698 (53%), Positives = 504/698 (72%), Gaps = 11/698 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGT 181
           V+M+AASAAL +SG PF GP+ GA+V +++G+YVLNP +D+        +  LDL V+GT
Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFVDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           ++AV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP    + D+S+L 
Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEETAKEPFDFQAPDYSELY 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +    +E +R +  I +K  R   +   ++ + +  + E     +  + S  + ++A 
Sbjct: 241 EAVKAAGEEQMRAAFAITDKQERTAAVAAARETIKAALTEEQLE--DANLGSAMKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGRD+ TVR I A+ GLL RTHGS+LF RG+TQ +VV TLGT +DEQ
Sbjct: 299 ILRGDVVKGGKRIDGRDTTTVRQIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  + +L+DI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAVLTDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHILNEM K LS
Sbjct: 479 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILNEMGKALS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS + 
Sbjct: 539 ETN-EFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKIASPNG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI SI   PE  ++Y G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 DAIQKAYDMIYSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 695


>gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 709

 Score =  834 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/701 (57%), Positives = 535/701 (76%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+   E+EW GR L LETGRIARQ+DGAVLA YGET VLATVV +R     +DFFPLT
Sbjct: 1   MFDIFREEVEWGGRKLTLETGRIARQADGAVLAHYGETSVLATVVGERDADPSKDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE RPTE E L+SR+IDR IRPLF+  +KNETQVI+ V+ H
Sbjct: 61  VNYQEKAYAAGKIPGGYFKREGRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E+ P +V+MVAASAAL +SGLPF GP+  ++V Y  G+Y+LNP  D+     LDL V+
Sbjct: 121 DMENDPDIVAMVAASAALTISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA +LSED++L A++FG    KPVI+AI  LA+  AKEP  I     ++
Sbjct: 181 GTVDAVLMVESEAKELSEDIMLGAVVFGQQGYKPVIDAIIGLAEQAAKEPWTIPDAK-NE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
            E ++ +++++DL+ +  I  K  R  ++ + K K ++ F S+E ++  + ++   F++I
Sbjct: 240 FESKVKKLVEKDLKKAFQIAGKQERQTKVAEAKAKAIAEFVSAESTAGEKNKVAEAFKEI 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVRT +L    R+DGRD +TVR I +QVG++ RTHGSSLF RG+TQA+VV TLGT E
Sbjct: 300 EKHVVRTSILKTGKRIDGRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLGTGE 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ++DSL GT +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+HP++P++  
Sbjct: 360 DEQWIDSLEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMMPKSDT 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVPI  PVAGIAMGL+K+ +   +LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAPVAGIAMGLIKEAEGVAVLSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+  IM +AL+QA  GRLHIL EMSK 
Sbjct: 480 IIGDEDHLGDMDFKVAGSANGVTALQMDIKITGITTEIMKIALEQAHEGRLHILGEMSKA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+ +R +LGEF PR+E + IP D+IR VIG GG VIR IVE++GAK++I DDGTVKIA++
Sbjct: 540 LNAARGELGEFAPRIETITIPTDKIREVIGSGGSVIRSIVEESGAKIDISDDGTVKIAAA 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +L+ I+ A   I+SI   PEV  IYKG+VVK+++FGAFV+F G+RDGLVHISQ++  R+ 
Sbjct: 600 NLSSIQDAINRIKSIASEPEVGVIYKGKVVKIVEFGAFVNFFGSRDGLVHISQMAERRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
             S+VVK+G  V+VK L FD+RGK++L+MK +DQ  GK + 
Sbjct: 660 HASEVVKDGQEVYVKCLGFDERGKVRLTMKGIDQTDGKEVA 700


>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
           RW1]
 gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
           RW1]
          Length = 774

 Score =  834 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/700 (53%), Positives = 502/700 (71%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   VEI+W G+ L LETGR+ARQ+DGAVLAT GETVVL  V   RS+K+GQDFFPLT
Sbjct: 1   MFDTKKVEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ ++ G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +++M+AASAAL +SG+PF GP+  A+V Y +G+Y+LNP   +   G LDL V+
Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFS 238
            T DAV+MVE EA +LSE+V+L A++F H   + VI+AI KLA+  AK+P       D S
Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASQDVIKAIIKLAEKSAKDPWEMAPQADLS 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
             + ++ +++ +D+  +  +  K  R   +++ + K    F+          I  + + +
Sbjct: 241 AAKTKLKKLVGKDITAAYKLTNKSARSSALNEARAKAKEAFADATPQDQMAAIK-LVKKL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VRT +L    R+DGRD+ TVR I A+   L R HGS+LF RG+TQ+I   TLGT+E
Sbjct: 300 EAEIVRTAILKDGRRIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKE 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D L+G +   FM+HYNF P + GEV R GAP RRE+GHG+LA RA+H VLP   +
Sbjct: 360 SEQMIDGLNGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+ S+ITES+GSSSMATVCG SLA+MDAGVPI +PV+GIAMGL+ +G DF ++SD
Sbjct: 420 FPYTIRLTSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAVISD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT MQMD+KI GI+E I   AL QAK GR HIL EM+K 
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  +R +L    PR+E M++P D+IR++IG GGK+IR IV  TGAKV+IDDDGTVKI+SS
Sbjct: 540 LDHTRTELSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDIDDDGTVKISSS 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+IEAAR  I  I   PEV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV 
Sbjct: 600 DTAQIEAARNWIIGIVAEPEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K +D + EG  V VK+L+ D+RGK++LSM+VVDQ TG+ +
Sbjct: 660 KVADALSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 699


>gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae
           T7901]
 gi|259534168|sp|C5BPV5|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae
           T7901]
          Length = 705

 Score =  834 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/698 (49%), Positives = 482/698 (69%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETGRIARQ+ GAVLA+ G+T VL TVV  +    GQDFFPL+V
Sbjct: 1   MNPVIKKFQYGNDTITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+ YA GKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE QV+  V+  +
Sbjct: 61  HYQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAE 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGS-LDLFVS 179
            +  P + +M+  SAAL +SG+PF GP+  A+V Y     Y+LNP       S LD+ V+
Sbjct: 121 KDVDPDICAMIGTSAALAISGIPFNGPIGAARVGYTQADGYLLNPTYQALASSELDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GTQDAVLMVE EAN+L ED++L A+++ H E + V++A+++LAK   K       +  + 
Sbjct: 181 GTQDAVLMVESEANELPEDIMLGAVLYAHQEMQAVVQAVNELAKDAGKPTWDWQPEAVNQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + +    +E + V+  I +K  R  ++ +L+ + V+  + E S  ++ ++  VF  +
Sbjct: 241 ALVDALKADFEESIGVAYRITDKQKRYDRLSELRSQAVAQLAGEGSDISQDDVKKVFGKL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR+ ++  + R+DGRD++TVR +  +VG+L + HGS+LF RG+TQA+VV TLG+  
Sbjct: 301 EKNIVRSRVVAGEPRIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G  R++FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP+  Q
Sbjct: 361 DAQIIDALEGEHRDNFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPKEDQ 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ + F +L+D
Sbjct: 421 FPYTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEENGFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM  AL+QA   RLHIL+EM+ V
Sbjct: 481 ILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMETALEQALHARLHILSEMNAV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +++ R  L +  P+   M + P++IR++IG GG  IR I E+TGA ++IDDDGTVKI   
Sbjct: 541 IAQPRESLSDNAPQFHTMKVDPEKIRDIIGKGGATIRSITEETGASIDIDDDGTVKIYGD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A   I  IT   E+ ++YKG+VV+++DFGAFV+F   +DGLVHISQ++ ERV 
Sbjct: 601 DGDSLQGAINRIEEITAEAEIGEVYKGKVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQ 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             +D +KEG  V VK +D D RG+IKLS+K +     +
Sbjct: 661 NVTDYLKEGQEVDVKCMDIDQRGRIKLSIKELLPQPEE 698


>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
 gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
          Length = 704

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/692 (48%), Positives = 476/692 (68%), Gaps = 2/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     +W    + LETG IARQ+ G+VL T  +T+VLATVV  R  K GQ FFPLT
Sbjct: 1   MFEIAKKTFQWGNHTVTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA G+IPGG+ +RE RPTE E L +R+IDR IRPLF + + NE QV++ V+  
Sbjct: 61  VDYFEKFYAAGRIPGGFFKREGRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E    + +M+ ASAAL +SG+PF GPV  A+V YI+GQYVLNP   +  +  LDL V+
Sbjct: 121 NPEIDADIPAMIGASAALAISGVPFNGPVGAARVGYIDGQYVLNPSASQLKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA++LSEDV+L A++FGH + + VI+AI +L +   K      + +  +
Sbjct: 181 GTDQAVLMVESEASELSEDVMLGAVVFGHEQMQTVIQAIEELVEAGGKAEWEWTAPEKNT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L E +  +  + +R +  +  K  R ++I  ++  + +  ++E +     E+  +  ++
Sbjct: 241 ALIERVHGLAGDAMRDAYKLRVKQERSQRIKQIEADVQAQLAAEENPPAATEVGDILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q+ +VR  +L  + R+DGRD+ TVR IS + G+L R HGS+LF RG+TQA+VV TLGT  
Sbjct: 301 QSSIVRNQILSGEPRIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+++G  R  FMM YN  P ATGE  R+G P RRE+GHGRLA+RAI  ++P    
Sbjct: 361 DEQIIDAITGEYRERFMMQYNMPPYATGETGRIGTPKRREVGHGRLAKRAITALVPSQED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+ + VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FAYSIRLVSEITESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM +AL QA+  R+HIL +M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L +F PR+  M I P++IR+VIG GG  IR I E+TG  ++I DDG++ IA+ 
Sbjct: 541 IPAARTELSDFAPRMYQMKINPERIRDVIGKGGATIRAITEETGTTIDIQDDGSITIAAV 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A++ I  +T   E+ KIY G V+K+++FGA V     RDGL+H+SQ++ ERV 
Sbjct: 601 DAEAARRAQQRIADLTAEVEIGKIYNGTVLKILEFGAIVQVLPGRDGLLHVSQIAQERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  D VKEG +V VK+++ DD+G+++LSMK V
Sbjct: 661 KVEDYVKEGQSVRVKVIEADDKGRLRLSMKAV 692


>gi|221640608|ref|YP_002526870.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           KD131]
 gi|254782733|sp|B9KP47|PNP_RHOSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221161389|gb|ACM02369.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           KD131]
          Length = 716

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/706 (52%), Positives = 506/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+  A+V +  G+YVLNP +D+ Q         
Sbjct: 121 DLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSE  +L A+ FGH   +PVI+ I   A+  A EP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAHEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D++ L  ++  + +  +R +  I EK  R   ID  +  + +  S   +   +  + +
Sbjct: 241 PPDYAALYAKVKSLGEAQMRAAFAIREKQDRVNAIDAARAAIKAQLSE--AELADENLGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +++ ++R  +++   R+DGRD++TVR I ++  +L RTHGS+LF RG+TQA+VV T
Sbjct: 299 AFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGK 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 WAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK LS +      + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALSSANS-FSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS+  A I+ A +MI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + +R+   ++V+KEG  V VKLL FD+RGK++L MK+VDQ TG+ I
Sbjct: 658 ANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEI 703


>gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales
           bacterium HTCC2654]
          Length = 716

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/703 (52%), Positives = 504/703 (71%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG++ARQ+DG V+AT GET V+A V + +  K+GQDFFPLT
Sbjct: 1   MFNEVKKSIQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF + +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVEGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+ GA+V Y +G+YVLNP  D+           
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGEYVLNPTCDDMHDLRNNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHEQIQPVIDLIIDLAEDSAKEPFDFA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S + E +    ++ +R +  I +K  R   +   K+++ +  + E  +     + +
Sbjct: 241 APDYSAIFEAVKAAGEDKVRAAYAITDKQERVAAVAAAKEEIKASLTEEQLADPS--LGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++ +  R+DGR  + VR I A+VGLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESSVLRGSVVKEGKRIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L+GT +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALTGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDA VP+  PVAG+AMGLV + D  
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAAVPLKAPVAGVAMGLVLEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS  R +     PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMNKALSAGRTEFSAHAPRIETMTVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI +I   PE  ++YKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 599 IKIASPNNDSIQKAYDMIHAIVAEPEEGQVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQI 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG
Sbjct: 659 ENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 701


>gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1]
 gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1]
          Length = 706

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/705 (52%), Positives = 509/705 (72%), Gaps = 11/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   EI+W    L LETGR+ARQ+DG+V+AT GET V+A V + +S K G DFFPLT
Sbjct: 1   MFNIVKKEIQWGEETLTLETGRVARQADGSVIATLGETSVMANVTFAKSPKPGMDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNET V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNETLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V + +G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGFEDGEYILNPEIDDMHDLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ F H+  +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHDSIQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S+L E +    ++ +R +  I +K  R   +  +K+ +    S E     +  + +
Sbjct: 241 APDYSELFEAVKAAGEDKMREAYAITDKLERQAAVSAVKEGVKEGLSEEQLE--DPNLSA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R+ ++    R+DGR  + VRDI ++  +L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESTVLRSDVVKNGRRIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D  
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI++ IM  AL+QAK GRLHIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITQEIMEKALEQAKAGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++E+  +  E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 AEMAKAVTEA-GEFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  KIYKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDSIQKAYDMIHSIVAEPEEGKIYKGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             ER+   SDV+ EG  VWVKLL FDDRGK++L+MK+V+Q TG+ 
Sbjct: 658 KNERLNHPSDVLSEGQEVWVKLLGFDDRGKVRLAMKMVNQETGEE 702


>gi|297184037|gb|ADI20157.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L06A09]
          Length = 709

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/707 (52%), Positives = 501/707 (70%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+D  V+ATYGET VLA V + +  K+GQ FFPLT
Sbjct: 1   MFNEVKKSIKWGEETLTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E Q+ + V+ H
Sbjct: 61  VNYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL LSG PF GP+   +V +  GQYVLNP  D+           
Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L AI F H + +PVI+ I  +A+  A EP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAINFAHEQIQPVIDMIIDMAEEAANEPFDYQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           S D+S+L   +    ++++R +  + +K  R   +   K  ++   S +    ++    +
Sbjct: 241 SPDYSELYSAVKAQGEDNIRSAYALTDKQERTSAVSAAKDSIIDALSEDQ--VSDPNFGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++++VVR  ++    R+DGRD  TVR I ++  +L RTHGS+LF RG+TQA+ V T
Sbjct: 299 CLKKLESEVVRGDIVKTGKRIDGRDLSTVRPIISETAVLPRTHGSALFTRGETQALAVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+LSGT R++F++HYNF P + GE  RM  P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALSGTYRSNFLLHYNFPPYSVGECGRMMGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P   +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  +
Sbjct: 419 PPATEFPYTIRMVSEITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  A+ QAK GRLHIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKAMAQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+  L+E+     E  PR+E + I P++IR VIG GGKVIR I E +GAKVNIDD+G 
Sbjct: 539 GEMANALTEA-GSFSEHAPRIETIKINPEKIREVIGSGGKVIREICEVSGAKVNIDDEGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASS+  +IE A+EMI  I   PEV  IY G VVKVMDFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASSNGEQIEKAKEMIMEIAAEPEVGVIYTGTVVKVMDFGAFVNFFGKRDGLVHVSQM 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           + ERV   SD+VKEG  V VKL+ FDDRGK++LSMKV+DQ TG+ I+
Sbjct: 658 ANERVNHPSDLVKEGQKVKVKLMGFDDRGKVRLSMKVIDQETGEEII 704


>gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
 gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
          Length = 762

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/705 (53%), Positives = 511/705 (72%), Gaps = 7/705 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE R TE E L SR+IDR  RPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPCRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE---DQGSLDL 176
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V +  +G+YVLNP + +   + G LDL
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGEDGRLDL 180

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-K 235
            V+ TQDAV+MVE EA +L+E+ +L A++F H E + VI AI +LA+  AK P  +D  +
Sbjct: 181 VVAATQDAVMMVESEAKELTEEEMLGAVMFAHEESRKVIGAIIELAEQAAKAPWELDPVE 240

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--S 293
           D S   +++   I  DL  +  I +K  R   ++  ++K    F+    S     +    
Sbjct: 241 DKSAKMDKLRAAIGSDLEAAYKITDKSARQDAVNAAREKAREAFADLAESDPAEYLGTLK 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + + +++++VR  +L    R+DGR  + VR I A VGLL RTHGS+LF RG+TQAI   T
Sbjct: 301 LVKKLESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++ EQ +D L G   ++FM+HYNF P + GEV R G  SRRE GHG+LA RA+ PVL
Sbjct: 361 LGTKDAEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R++S+ITES+GSSSMATVCG +L++MDAGVP+++PV+GIAMGL+ +G+DF
Sbjct: 421 PDAEEFPYTIRVLSDITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGEDF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAG++ GIT++QMD+K+ GI++ IM  AL+QAK GR HIL 
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTQALEQAKAGRAHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+K L+ +R ++ +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+GT+
Sbjct: 541 EMAKALTGARTEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KI+SS+  EIEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ 
Sbjct: 601 KISSSNADEIEAAKKWIEGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMK 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            ERV K +DVV EG  V VK+L+ D+RGK++LSM+VVDQ TG+ +
Sbjct: 661 NERVEKPTDVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEEL 705


>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 712

 Score =  831 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/702 (50%), Positives = 488/702 (69%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TV+LATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR IRPLF + Y NE QVII+V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL L+G+PF GPV  A+V YI+GQYVLNP   + + S LDL V+
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH++ K VIEAI  L +   K  +   +     
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   +SQ+ +  LR +    +K  R +++  +  ++     +E ++      +  E+ S
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+ F
Sbjct: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK GR HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +   R +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G V
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   +  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            ERV   +D +KEG  V VK+L+ DDRG++KLSMK      G
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEG 702


>gi|254461626|ref|ZP_05075042.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium
           HTCC2083]
 gi|206678215|gb|EDZ42702.1| 3' exoribonuclease family, domain 2 [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 713

 Score =  831 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/706 (51%), Positives = 500/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    IEW    L LETG++ARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNVTKKSIEWGDDTLTLETGKVARQADGCVIATLGETSVMAAVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RP+E E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL++ P  ++M+AASAAL +SG PF GP+  A+V +++G+Y LNP +D+        +  
Sbjct: 121 DLDNDPDTLAMIAASAALTISGAPFMGPIACARVGFVDGEYTLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHEQIQPVIDLIVDLAEDCAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   ++   ++D+R +  I +K  R   ++D +  +    + E     +  + S
Sbjct: 241 PADYSELSAAVAAAGEKDMRAAFAITDKQERTTAVNDARAVIKDALTEEQ--LADANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGRD+ T+R I ++ GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEAGILRGDVVKTGKRIDGRDTTTIRPIVSETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++DSL G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDSLHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLIMEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+ +IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPDIMEKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K +  +  +     PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMGKAIDGA-QEFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGESIKKAYDMIYSIVAEPEEGMVYDGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQATGEEV 703


>gi|187471095|sp|Q0A7A1|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 698

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/691 (50%), Positives = 470/691 (68%), Gaps = 5/691 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
               ++    + LETG +ARQ+DGAVL    +TVVL T V  +    G+ FFPLTVNYQE
Sbjct: 5   KKSFQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           RTYA GKIPGG+ +RE RP+E E L  R+IDR IRPLF + + NE QV+  V+  + E  
Sbjct: 65  RTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVD 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
             + +++ ASAAL +SG+PF+GP+  A+V Y +G+Y+LNP  +E     LDL V+GT++A
Sbjct: 125 ADIPALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEEE 243
           VLMVE EANQL E+ +L A+++GH + +  I+AI++L     K           + LE  
Sbjct: 185 VLMVESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAALETA 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQA 300
           +  ++ +DL  +  IPEK  R  +I +L+++ V        E   W E ++   F+ ++ 
Sbjct: 245 IKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDAFKGLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  +L  + R+DGRD+ TVR I  +VG L RTHGS++F RG+TQA+VV TLGT  D 
Sbjct: 305 DIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++ G ++  FM+HYNF P   GE   MG P RREIGHG+LA+R I  V+P     P
Sbjct: 365 QIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDCP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+K+ + F +LSDI 
Sbjct: 425 YVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+  IM  AL+QA+ GRLHIL EM+  +S
Sbjct: 485 GDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAIS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ E+ PR+  + I PD+IR+VIG GG  IR + E+TG  ++I DDG V IAS+  
Sbjct: 545 GPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDISDDGKVTIASADK 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  + AR  I  +T   EV  +Y+G+V K+MDFGAFV+    RDGLVHISQ+S ERV + 
Sbjct: 605 AAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVNILPGRDGLVHISQISNERVERV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            D +KEGDTV VK+L+ D +G+I+LSMK V 
Sbjct: 665 GDYLKEGDTVRVKVLEVDRQGRIRLSMKAVQ 695


>gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 720

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/691 (50%), Positives = 470/691 (68%), Gaps = 5/691 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
               ++    + LETG +ARQ+DGAVL    +TVVL T V  +    G+ FFPLTVNYQE
Sbjct: 27  KKSFQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQE 86

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           RTYA GKIPGG+ +RE RP+E E L  R+IDR IRPLF + + NE QV+  V+  + E  
Sbjct: 87  RTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVD 146

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
             + +++ ASAAL +SG+PF+GP+  A+V Y +G+Y+LNP  +E     LDL V+GT++A
Sbjct: 147 ADIPALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENA 206

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEEE 243
           VLMVE EANQL E+ +L A+++GH + +  I+AI++L     K           + LE  
Sbjct: 207 VLMVESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAALETA 266

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQA 300
           +  ++ +DL  +  IPEK  R  +I +L+++ V        E   W E ++   F+ ++ 
Sbjct: 267 IKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDAFKGLEK 326

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  +L  + R+DGRD+ TVR I  +VG L RTHGS++F RG+TQA+VV TLGT  D 
Sbjct: 327 DIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDA 386

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++ G ++  FM+HYNF P   GE   MG P RREIGHG+LA+R I  V+P     P
Sbjct: 387 QIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDCP 446

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMATVCG+SL+LMDAGVP+  PVAGIAMGL+K+ + F +LSDI 
Sbjct: 447 YVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVLSDIL 506

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+SG+TA+QMD+KI GI+  IM  AL+QA+ GRLHIL EM+  +S
Sbjct: 507 GDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAIS 566

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ E+ PR+  + I PD+IR+VIG GG  IR + E+TG  ++I DDG V IAS+  
Sbjct: 567 GPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDISDDGKVTIASADK 626

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  + AR  I  +T   EV  +Y+G+V K+MDFGAFV+    RDGLVHISQ+S ERV + 
Sbjct: 627 AAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVNILPGRDGLVHISQISNERVERV 686

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            D +KEGDTV VK+L+ D +G+I+LSMK V 
Sbjct: 687 GDYLKEGDTVRVKVLEVDRQGRIRLSMKAVQ 717


>gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 716

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/707 (53%), Positives = 503/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV    I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFDVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y NG+YVLNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFRGPIAGCRVGYTNGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHQQIQPVIDLIISLAEDAAKEPFEFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L E +    +E +R +  I +K  R   +   ++ + +  + E     +  + +
Sbjct: 241 PPDYSALYEAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTEEQLE--DPNLGA 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR +  VR I A+ GLL RTHGS+LF RG+TQA+ V T
Sbjct: 299 AMKKLEAGILRGDVVKGGKRIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G P RRE+GHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D D
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGD 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           NEMSK LSE+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 NEMSKALSET-SEFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNAEAIQKAYDMIHSIVAEPEEGKIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMK VDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKCVDQETGEEIV 704


>gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter
           denitrificans OCh 114]
 gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter
           denitrificans OCh 114]
          Length = 711

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/706 (51%), Positives = 500/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     IEW    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR +RPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ GA+V + +G+Y+LNP +D+        +  
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAGARVGFEDGEYILNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H+  +PV++ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDCAKEPFDFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +    + ++R +  I +K  R   +   ++ +++  S E     +  + S
Sbjct: 241 PPDYSELSAAVKAAGETEMRAAFAISDKQERTTAVAAARETIMAALSDEQKE--DPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +RDI  + GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEASILRGDVVKTGKRIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++ +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMAKSITGA-QDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEI 703


>gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae]
          Length = 712

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/702 (50%), Positives = 490/702 (69%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TV+LATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR IRPLF + Y NE QVII+V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL L+G+PF GPV  A+V YI+GQYVLNP   + + S LDL V+
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH++ K VIEAI  L +   K  +   +     
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   +SQ+ +  LR +    +K  R +++  +  ++     +E ++      +  E+ S
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D+++G  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+
Sbjct: 361 LGTARDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVM 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+   VAGIAMGL+K+G+ F
Sbjct: 421 PSLEAFPYTIRLVSEITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK GR HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +   R +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G V
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   +  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            ERV   +D +KEG  V VK+L+ DDRG++KLSMK      G
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEG 702


>gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS]
 gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
 gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BW2952]
 gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038330|ref|ZP_04872388.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
 gi|256024260|ref|ZP_05438125.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           4_1_40B]
 gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50]
 gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           196-1]
 gi|307139851|ref|ZP_07499207.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli H736]
 gi|1172545|sp|P05055|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610300|sp|A8A4Y0|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096729|sp|B1XGX6|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|259534118|sp|C4ZSQ5|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS]
 gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
 gi|226839954|gb|EEH71975.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
 gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BW2952]
 gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
 gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           196-1]
 gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
           phosphorylase and degradosome [Escherichia coli
           BL21(DE3)]
 gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
 gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
 gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
 gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
 gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
          Length = 711

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|257096728|sp|B7M072|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
 gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
          Length = 763

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/702 (53%), Positives = 510/702 (72%), Gaps = 5/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV IEW G+ L LETG+IARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDKKTVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE R TE E L SR+IDR +RPLF + + NE  VI  V+  
Sbjct: 61  VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD---EDQGSLDLF 177
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V + NG+Y LNP L    +++G LDL 
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFRNGEYELNPSLANALDEEGRLDLV 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKD 236
           V+ TQDAV+MVE EA +L+E+ +L A+ F H+E + V+ AI  LA+  AK+P  I+ + D
Sbjct: 181 VAATQDAVMMVESEAKELTEEEMLGAVAFAHDEARKVVGAIVDLAEQAAKDPWEIERADD 240

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            S +++E+  +I +D+  +  I +K  R  +ID  + K+ + +  +     +     + +
Sbjct: 241 LSGMKDEIRGLIGDDIAAAYKITDKSERRDRIDAARDKVKAKY-EDEDGQTQSAANKIIK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +++++VR  +L    R+DGR  + VR I A VGLL RTHGS+LF RG+TQAI   TLGT
Sbjct: 300 KLESEIVRGSILKDGTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGT 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ++ EQ +D L G   N+FM+HYNF P + GEV R G  SRRE GHG+LA RA+HPVLP  
Sbjct: 360 KDAEQMIDGLEGLSYNNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPDH 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RI+S+ITES+GSSSMATVCG  L++MDAGVPI +PV+GIAMGL+ +G+DF +L
Sbjct: 420 EDFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAVL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAG+++GIT MQMD+K+ GI++ IM  AL+QAK GR HIL EM+
Sbjct: 480 SDILGDEDHLGDMDFKVAGSEAGITTMQMDIKVAGITQEIMAKALEQAKAGRQHILGEMA 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L  +R  + +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+
Sbjct: 540 KALGSARTGVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKIS 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+  EIEAAR+ I  I +  EV K+Y G+VV ++DFGAFV+F G +DGLVH+S++  ER
Sbjct: 600 SSNADEIEAARKWIEGIVEEAEVGKVYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 660 VEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEEL 701


>gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/699 (48%), Positives = 477/699 (68%), Gaps = 5/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NYQERTYA G+IPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVF 295
            L   +  + +  L  +  I +K  R  QID +K  +++   +E +     +E E+  + 
Sbjct: 241 ALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDIL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLG
Sbjct: 301 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P 
Sbjct: 361 TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++
Sbjct: 421 ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+  GITA+QMD+KI GI++ IM +AL QAK  RLHIL  M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKI
Sbjct: 541 EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++   + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +
Sbjct: 601 AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           RV K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 661 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 699


>gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
          Length = 711

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           E24377A]
 gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
 gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
 gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
 gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1012]
 gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209397723|ref|YP_002272635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256018916|ref|ZP_05432781.1| polynucleotide phosphorylase/polyadenylase [Shigella sp. D9]
 gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
 gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
 gi|187610299|sp|A7ZS61|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610334|sp|Q8X9M3|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611306|sp|Q3YX77|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702649|sp|B5YS54|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096725|sp|B7LH99|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096726|sp|B7NKN3|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096731|sp|B6I1N9|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E24377A]
 gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
 gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
 gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
 gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1012]
 gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. TW14359]
 gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
 gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
 gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
 gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
           9905]
 gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           EC4100B]
 gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. G5101]
 gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H- str. 493-89]
 gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H- str. H 2687]
 gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E128010]
 gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
 gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11]
 gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
 gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
 gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
 gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. 1044]
          Length = 711

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans C54]
          Length = 718

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/697 (47%), Positives = 481/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY +NP   + + S LDL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT++AVLMVE EA+QLSE+++L  +++GH + + VI AI +L K   K            
Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQPPAKDE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-----HSSWNEGEIVS 293
            L   ++   +E L  +  I EK  R  ++ ++   + +  ++        + +   + +
Sbjct: 241 ALIAAVTSAAQEGLNAAYQIREKQARTTKLREVYADVSAKLNAAAAEKGEPAPDAVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   +++ +VR  +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 ILFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+ P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALIPLL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ DG  F
Sbjct: 421 PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A+ + A+  I  +T   EV ++Y G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697


>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
           carboxydivorans Nor1]
 gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
           carboxydivorans Nor1]
          Length = 699

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/689 (45%), Positives = 464/689 (67%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T +++ AGR L +ETG++A+Q++GAVL  YG+T VL T       + G DFFPLTV+Y
Sbjct: 1   MQTFQMQLAGRALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE RP+E  IL  R+IDR IRPLF++ ++N+  V+  V+  D +
Sbjct: 61  EERLYSVGKIPGGFIKREGRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P + +M+ AS AL +S +PF GP+ G +V  ++GQ+++NP +++ +   L+L V+GT+
Sbjct: 121 NPPDIPAMIGASCALSISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSDLNLVVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DAVLMVE  AN++ E+ +LDAI FGH+  + ++    K+     K    I   +   +++
Sbjct: 181 DAVLMVEAGANEVPEEAILDAITFGHDVIREIVAFQEKIVAEVGKPKREIPLYEVPPEID 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             + + + E L+ +   P+K +R +QI  +K +   +F   +   N  +I  V + +  +
Sbjct: 241 AAVREYVTEKLKDAVTNPDKLMREEQIKQVKAEATEHFLVLYPD-NAKDIAYVMQKVLKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++   KVR DGR  + +R IS +VGLL+RTHGS LF RG TQ + V TLG   DEQ
Sbjct: 300 IVRKMITIDKVRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 360 ILDGLGVEESKRYMHHYNFPAFSVGETRPARGPGRREIGHGALAERALLPVIPPETEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+SM +VCGS+L+LMDAGVPI  PV+G+AMGLVK+GD + IL+DI G
Sbjct: 420 TIRLVSEVLESNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLVKEGDHYTILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  G+TA+QMD+KI GI++ I+  AL+QA+RGRL IL++M +V+ E
Sbjct: 480 IEDALGDMDFKVAGTAKGVTAIQMDIKISGITKEILADALEQARRGRLFILDKMLEVIKE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PR+  M I PD+IR+VIG GGK I+ I+++TG  ++I+DDG V IA+  + 
Sbjct: 540 PRPELSPYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGVTIDIEDDGKVFIAAVDVE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A  +I ++    EV  +Y G+V ++M+FGAFV     ++GLVHISQL+ ERV K  
Sbjct: 600 AGKKAVRIIENLVRDVEVGGVYMGKVTRLMNFGAFVEILPGKEGLVHISQLARERVNKVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+ + D +G+I LS K +
Sbjct: 660 DVVKVGDEILVKVTEIDRQGRINLSRKEL 688


>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 714

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/697 (49%), Positives = 484/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ +  SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++   DL  +  + +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E110019]
 gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E110019]
          Length = 711

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKKAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           2362-75]
 gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           2362-75]
          Length = 711

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           SMS-3-5]
 gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
 gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           3_2_53FAA]
 gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           FVEC1412]
 gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           FVEC1302]
 gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
 gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
 gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
 gi|187610330|sp|A1AG69|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610331|sp|Q0TCU5|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610332|sp|Q8FD87|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610333|sp|Q1R6H4|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702650|sp|B1LFR6|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096724|sp|B7MB85|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096727|sp|B7N0U9|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096730|sp|B7NDF0|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           SMS-3-5]
 gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
 gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
 gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           3_2_53FAA]
 gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           FVEC1412]
 gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           IHE3034]
 gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           FVEC1302]
 gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
 gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
 gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           WV_060327]
 gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           RN587/1]
 gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
 gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
 gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
 gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           TW10509]
 gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           STEC_7v]
 gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
 gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
          Length = 711

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
 gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
          Length = 711

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDDTLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|187611310|sp|Q31W43|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
           796-83]
          Length = 711

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 478/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R++  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           AMMD]
 gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           MC40-6]
 gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
 gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 714

 Score =  829 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/697 (49%), Positives = 484/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ +  SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++   DL  +  + +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDAQAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5
           str. 8401]
 gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
 gi|123342480|sp|Q0T0B7|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611324|sp|Q83JG0|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str.
           8401]
 gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
 gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           EPECa14]
 gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
 gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1180]
 gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
           4343-70]
 gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
 gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
           2747-71]
 gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71]
 gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
 gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
 gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
 gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
 gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
          Length = 711

 Score =  829 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC
           8739]
 gi|189037305|sp|B1IQV7|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
           8739]
          Length = 711

 Score =  829 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|257096720|sp|B7LR33|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
          Length = 711

 Score =  829 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
           z3032]
 gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
           z3032]
          Length = 711

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/699 (48%), Positives = 477/699 (68%), Gaps = 5/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NYQERTYA G+IPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKASKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVF 295
            L   +  + +  L  +  I +K  R  QID +K  +++   +E +     +E E+  + 
Sbjct: 241 ALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDIL 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLG
Sbjct: 301 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P 
Sbjct: 361 TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++
Sbjct: 421 ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+  GITA+QMD+KI GI++ IM +AL QAK  RLHIL  M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKI
Sbjct: 541 EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++   + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +
Sbjct: 601 AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           RV K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 661 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 699


>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 714

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/697 (49%), Positives = 485/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ +  SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++   DL  +  + +K  R  ++ ++     +   ++  +      ++  + +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEADALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
 gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
          Length = 734

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVLVKVLEVDRQGRIRLSIKEATEQS 719


>gi|89109929|ref|AP_003709.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. W3110]
 gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
           REL606]
 gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           187-1]
 gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           175-1]
 gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           146-1]
 gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
 gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K12 substr. W3110]
 gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
           REL606]
 gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BL21(DE3)]
 gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           175-1]
 gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           187-1]
 gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           146-1]
 gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
           H10407]
 gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
          Length = 734

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|167630367|ref|YP_001680866.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
           modesticaldum Ice1]
 gi|257096694|sp|B0THS2|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
           modesticaldum Ice1]
          Length = 709

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/689 (47%), Positives = 465/689 (67%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +    +E AGR L +ETGR+A+Q+ G+VLA YG+TVVL T    +  + G DFFPLTV+Y
Sbjct: 1   MQVFSMEIAGRTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RPTE  IL +R+IDR IRPLF K ++N+ QV+  VM  D +
Sbjct: 61  EERLYAVGKIPGGFIKREGRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P +V M+ AS AL LS +PFEGP+ G  V  ++G+ ++NP +++ ++  + L V+GT+
Sbjct: 121 CPPDIVGMIGASCALSLSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSDMHLVVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DAV+MVE  AN++ E+ +++AI+FGH E + ++    ++  +  K    +  K    +LE
Sbjct: 181 DAVMMVEAGANEVPEEDMIEAIMFGHQEIQRIVAFQEEMVAVAGKPKREVPLKQINPELE 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + + + + + LR +   P+K  R   I  + K+ V           E +I +V + ++ +
Sbjct: 241 QAVREYVGDKLRNAIQNPDKLSREADIQAVMKETVEALLPHFPEE-EKDIRTVLDTMEKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++   K R DGR  + +R IS +VG+L RTHGS LF RG TQ + V TLGT  D Q
Sbjct: 300 IVRKLITVDKQRPDGRKMDEIRPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 360 ILDGLGVEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE  ES+GS+SMA+VCGS+L+LM+AGVPI KPVAGIAMGL+K+G+ F ILSDI G
Sbjct: 420 TIRLVSEAVESNGSTSMASVCGSTLSLMNAGVPIKKPVAGIAMGLIKEGEHFSILSDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  ALQQA++GRL IL++M  V+ +
Sbjct: 480 MEDHLGDMDFKVAGTADGVTALQMDIKIKGVNREILTQALQQARKGRLFILDKMLAVIDK 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++  + PR+  M+I PD+IR VIG GGKVI  I+ +TG K++I+DDG + IA++   
Sbjct: 540 PAAEMSPYAPRIITMSIDPDKIREVIGPGGKVINKIIAETGVKIDIEDDGRIFIAATDTE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A  +I SIT   EV K+Y G+V ++M+FGAFV     ++GL+HISQL+ ERVAK  
Sbjct: 600 AANKAVRIIESITADVEVGKVYTGKVTRIMNFGAFVEVLPGKEGLIHISQLAEERVAKVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD V VK+++ D +G+I LS K V
Sbjct: 660 DVVKIGDEVTVKVVEIDKQGRINLSRKEV 688


>gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC
           3083-94]
 gi|226702689|sp|B2U211|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC
           3083-94]
          Length = 711

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + ++TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
 gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
          Length = 734

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           vietnamiensis G4]
 gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
          Length = 715

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/697 (48%), Positives = 483/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++   DL  +  + +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
           TW07627]
 gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
           TW07627]
          Length = 711

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + KVVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKKVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++    V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMNQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 536]
 gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
           O1]
 gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
 gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
 gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
 gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           200-1]
 gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           45-1]
 gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           185-1]
 gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
 gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536]
 gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
           O1]
 gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
 gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
 gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
 gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           185-1]
 gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           200-1]
 gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           45-1]
 gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
           83972]
 gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           110-3]
 gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           153-1]
 gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           16-3]
 gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           57-2]
 gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           60-1]
 gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
          Length = 734

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1617]
 gi|187611311|sp|Q32BG9|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1617]
          Length = 711

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 476/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D +  G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLLMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 EDL933]
 gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. Sakai]
 gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei Ss046]
 gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11]
 gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
 gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
 gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O103:H2 str. 12009]
 gi|291284540|ref|YP_003501358.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. CB9615]
 gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
 gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           107-1]
 gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           119-7]
 gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           84-1]
 gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           182-1]
 gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           21-1]
 gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           124-1]
 gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           78-1]
 gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
 gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
 gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity
           [Escherichia coli O157:H7 str. EDL933]
 gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
 gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
 gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11]
 gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
 gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
 gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O103:H2 str. 12009]
 gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. CB9615]
 gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
 gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           84-1]
 gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           182-1]
 gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           21-1]
 gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           119-7]
 gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           107-1]
 gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           124-1]
 gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           78-1]
 gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           85-1]
 gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           117-3]
 gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
 gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
          Length = 734

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           CFT073]
 gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UTI89]
 gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073]
 gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89]
          Length = 740

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 32  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 91

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 92  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 151

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 152 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 211

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 212 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 271

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 272 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 331

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 332 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 391

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 392 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 451

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 452 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 511

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 512 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 571

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 572 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 631

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 632 EKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 691

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 692 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 725


>gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
 gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
          Length = 740

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 32  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 91

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 92  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 151

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 152 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 211

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 212 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 271

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 272 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 331

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 332 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 391

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 392 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 451

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 452 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 511

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 512 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 571

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 572 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 631

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 632 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 691

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 692 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 725


>gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 710

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 479/702 (68%), Gaps = 5/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI++LAK   K       +  + 
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQSLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPDLDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697
           K +D ++ G  V VK+L+ D +G+++LS+K      Q  G+P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEP 702


>gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
          Length = 711

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 696


>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
 gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
          Length = 710

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/693 (49%), Positives = 494/693 (71%), Gaps = 3/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +  ++     LKLETG +ARQ+DGAV+ +YGETVVL TVV ++++K+GQDFFPLT
Sbjct: 5   MFNKVSKSMKLGAHELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+ENEIL+ R+IDR +RPLF K + N+ Q++  V+  
Sbjct: 65  VDYQEKTYAAGKIPGGFFKREGRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSS 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +++ ASAAL +SG+PF GP+   +V Y++G+YV+NP   +  +  LDL V+
Sbjct: 125 DSEIDADIPAIIGASAALSISGIPFYGPIGATKVGYVDGEYVINPTKTQLQESELDLVVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+DAVLMVE EA +LSE V+LDA++ GH   K VI+ I+  AK  AK+P   ++ + + 
Sbjct: 185 GTKDAVLMVESEAKELSEKVMLDAVLAGHKAAKDVIKLINDFAKDSAKDPWEWNAPEPNQ 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
           +L  ++S++ ++DL  +  I  K  R ++I ++K K+ +   +E     E  E+   F +
Sbjct: 245 ELISKISKLAEKDLSKAFSIKLKSERSQKISEIKDKVQAELITEDMGTLEVNEVNKEFFN 304

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK+VR+ +LD + R+DGRD+ TVR I     +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 305 LEAKIVRSKILDGEPRIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTP 364

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G   + FM+HYNF P +TGE  R+G+P RREIGHGRLA+RA+  VLP+  
Sbjct: 365 RDAQIIDALQGEYTDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALLAVLPEQE 424

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEI ES+GSSSMA+VCG  +A++DAGVP+   VAGIAMGL+K+ +   IL+
Sbjct: 425 DFDYTIRLVSEIMESNGSSSMASVCGGCMAMLDAGVPLKSHVAGIAMGLIKEDNRVAILT 484

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+  IM +AL+QAK GR HIL+ M K
Sbjct: 485 DILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITTEIMQVALKQAKEGREHILDLMKK 544

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  SR +L ++ PR+  + I PD+IR+VIG GG VI+ + E+T   ++I DDG VK+A 
Sbjct: 545 ALKSSRTELSKYAPRIMTLNIHPDKIRDVIGKGGAVIKALTEETNTTIDITDDGLVKVAC 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  E + A + I+ IT   EV++IY G+VVK++DFGA V     +DGL+HISQ++ ERV
Sbjct: 605 TSGEEGQLAIDRIKEITADVEVDQIYDGKVVKILDFGAIVQLIPGKDGLLHISQIAHERV 664

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               D + EGD V VK+++ D +GK+++S K +
Sbjct: 665 KSVKDHLSEGDEVKVKVIEVDQKGKVRVSAKAL 697


>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
 gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
          Length = 699

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/699 (49%), Positives = 486/699 (69%), Gaps = 4/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M         +    + LETG +ARQ+ GAV+    +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MPTAIKKTFTYGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA G+IPGG+ +RE RPTE E L SR+IDR IRPLF + + NE QVI+ V+  
Sbjct: 61  VDYVEKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+AASAAL +SG+PF+GP+  A+V Y +GQY+LNP +++ + S L+L V+
Sbjct: 121 NPEVDADIPAMIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  AVLMVE EA++LSE V+L A++FGH + +  I AI++L ++  K          + 
Sbjct: 181 GTASAVLMVESEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEWNWQPPAAND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFED 297
            L   + ++   D+  +  I  K  R +++ +++K+ ++  +    ++ +E EI  +F  
Sbjct: 241 ALVARVKELALADVEEAFRITSKQARTERLSEIRKRTIAALTDGVDNAPSENEIKDIFFT 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A  VR+ +L+ + R+DGRD+ TVR I  +VG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAGTVRSRILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+++G  +  FM+HYNF P +TGE  R G   RREIGHGRLA+RA+  +LP+  
Sbjct: 361 RDEQIIDAIAGEYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVP+   VAGIAMGL+KDG+ F +L+
Sbjct: 421 DFSYTIRVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA  GRLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKD 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R ++ EF PR+  M I P++IR+VIG GG VIR + E+TG  + I+DDG++ I+S
Sbjct: 541 ALGVARGEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSITISS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    + A+  I  IT   EV K+Y+G VV+++DFGA V+    RDGL+H+SQ++ ERV
Sbjct: 601 VSAEGAQKAKARIEDITAEVEVGKVYEGTVVRLLDFGAIVNILPGRDGLLHVSQIANERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTG 695
               D VKEG  V VK+L+ D+RGKI+LSMK  +++N G
Sbjct: 661 NNVGDYVKEGQAVRVKVLETDERGKIRLSMKALLNENAG 699


>gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591]
 gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591]
          Length = 706

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/699 (49%), Positives = 479/699 (68%), Gaps = 5/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPGG+ RRE RP+E E LISR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E +   LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA+ LSED +L A++FGH++ + VIE I  L     K      + D + 
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWSWQAPDVNV 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L   +  + +  L  +  I EK  R  Q+D +K  +V+   +E  + +E E+  +   I
Sbjct: 241 ELHNRVQALSEARLGDAYRITEKQERYAQVDTIKADVVAALLAEDETLDENELRDILGSI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K +D ++ G  V VK+L+ D +G+++LS+K   + T +P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIK---EATAQP 696


>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383]
 gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
          Length = 715

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/697 (49%), Positives = 486/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSEDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    + S+      ++  + +
Sbjct: 243 PLIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDASAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSDGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           UMN026]
 gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           198-1]
 gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           69-1]
 gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
 gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           UMN026]
 gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
 gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           198-1]
 gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           69-1]
 gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
          Length = 734

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
           ATCC 11170]
 gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 708

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/701 (54%), Positives = 507/701 (72%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+V   EIEW GR L LETGRIARQ+DGAV+A+ G+T VL T V  ++ K   DFFPLT
Sbjct: 3   LFNVFRKEIEWGGRKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKT-KSKFDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+T+A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF   YKNETQ++  V+ H
Sbjct: 62  VNYQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLCH 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           DLE++P +V++V ASAAL LSGLPF GP+  A+V  I+G +VLNP  D+   S LDL V+
Sbjct: 122 DLENNPDIVAIVGASAALTLSGLPFLGPIGAARVGLIDGAFVLNPTRDQMADSVLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++ VLMVE EA++LSE  +LDA++FGH   +PVI+AI  LA+ CA+EP  I+      
Sbjct: 182 GTREGVLMVESEAHELSEQQMLDAVMFGHEGYQPVIDAIIALAEQCAREPRAIEPPAPEA 241

Query: 240 LEE--EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
                ++ ++ +  LR +    +K VR  ++D ++  + + F+            + F+D
Sbjct: 242 EAVAAKVREVGEAGLRDAYKEADKMVRHDKVDAVRDAVTAAFA--GDDAALALAGAAFKD 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  +VR  +LD  +R+DGRD++TVR I    G+L R HGS+LF RG+TQA+V  TLGT 
Sbjct: 300 LEKDIVRGSILDTGLRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTG 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP++P   
Sbjct: 360 QDEQIIDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMMPAKD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCG+SLALMDAGVP+   VAGIAMGL+K+ + F +LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMATVCGTSLALMDAGVPLKNAVAGIAMGLIKEDERFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GIT++QMD+KI  I++ IM +AL QAK GR+HIL EM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGTANGITSLQMDIKITSITKEIMNVALNQAKDGRIHILGEMTK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  +R  + +F PR+  + +PP ++R VIG GGKVIR I E TG K++I+DDGT+KIAS
Sbjct: 540 ALGNARSDVSDFAPRITTIKVPPQKVREVIGSGGKVIREITEVTGTKIDIEDDGTIKIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A + I+ I   PE+  +Y G+VVK+MDFGAFV+F G RDGLVHIS+LS +RV
Sbjct: 600 ADAEATQRAVDWIKGIVAEPEIGVVYTGKVVKIMDFGAFVNFLGTRDGLVHISELSQDRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  DVV  GD V VK + FDDRGKIKLSMK VDQ TG  +
Sbjct: 660 KKVGDVVNVGDQVKVKCVGFDDRGKIKLSMKQVDQVTGADL 700


>gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15]
          Length = 734

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T]
 gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T]
          Length = 699

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/699 (49%), Positives = 489/699 (69%), Gaps = 4/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M         +    + LETG +ARQ+ GAV+    ETVVLATVV  +  + GQDFFPLT
Sbjct: 1   MPTAIKKTFAYGAHTVTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA G+IPGG+ +RE RP+E EIL SR+IDR IRPLF   + NE QVI+ V+  
Sbjct: 61  VDYVEKFYAAGRIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+ ASAAL +SGLPF GPV  A+V Y++G+Y+LNP   E Q S ++L V+
Sbjct: 121 NPEIDSDIPAMIGASAALAISGLPFNGPVGAARVGYLDGKYILNPTATELQSSAMNLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GTQ AVLMVE EA +L EDV+L A++FGH + +  I+AI+ L ++  K           +
Sbjct: 181 GTQTAVLMVESEAQELPEDVMLGAVVFGHEQMQTAIKAINDLVEVAGKPEWDWQAPPANA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFED 297
            L  +++++ K ++  +  I  K  R  ++ +++K+++   +    ++ +  E+  +F +
Sbjct: 241 ALIAKVTELAKAEMEEAFRITSKQERSARLSEIRKRVIGQLTEGVENAPSVNELKDLFFN 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++ +VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LESGIVRSRILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+++G  +  F++HYNF P  TGE  R G   RRE+GHGRLA+R++  +LP+  
Sbjct: 361 RDEQIIDAIAGEYKERFLLHYNFPPFCTGETGRFGITKRREVGHGRLAKRSLVAMLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+   VAGIAMGL+KDG+ F +L+
Sbjct: 421 EFSYTVRVVSEITESNGSSSMASVCGGSLAMMDAGVPLKNHVAGIAMGLIKDGNRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT +QMD+KI GI++ IM  AL+QAK GRLHIL  M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTENGITGLQMDIKIQGITKEIMHAALEQAKEGRLHILGLMQQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L  SR Q+ E+ PR+  M I P++IR+VIG GG VIR + E+TG  + I+DDG+VKI+S
Sbjct: 541 ALGTSRGQVSEYAPRMINMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSVKISS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    +AA+  I +IT   EV K+Y+G VV+++DFGA V+    RDGL+H+SQ++ ERV
Sbjct: 601 VSAEGAQAAKARIEAITAEVEVGKVYEGPVVRLLDFGAIVNIMPGRDGLLHVSQIANERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTG 695
              SD VKEG  V VK+L+ D+RGKI+LSMK  +++N G
Sbjct: 661 NNVSDYVKEGQVVRVKVLETDERGKIRLSMKALLNENAG 699


>gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227]
 gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227]
          Length = 734

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 477/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R++  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae
           WPP163]
 gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 706

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/698 (49%), Positives = 481/698 (68%), Gaps = 2/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GTQ AVLMVE EA  LSED +L A++FGH++ + VIE I+ L     K      + + + 
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNI 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+ +  + +  L  +  I EK  R  Q++ +K  +V+   +E  + N GEI  +  +I
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILGNI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K +D ++ G  V VK+L+ D +G+++LS+K  +  T +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQTQE 698


>gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
          Length = 734

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/694 (48%), Positives = 474/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+ 
Sbjct: 266 NARVAALAESRLSDAYRITDKQERYAQVDAIKSETIDALLAEDETLDANELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 719


>gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
 gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
          Length = 710

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 481/702 (68%), Gaps = 5/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI++LAK   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P   GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV---DQNTGKP 697
           K +D ++ G  V VK+L+ D +G+++LS+K      Q  G+P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEP 702


>gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
           ATCC 35469]
 gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
           ATCC 35469]
          Length = 734

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
           str. 2457T]
 gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
           str. 301]
 gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O26:H11 str. 11368]
 gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O111:H- str. 11128]
 gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           145-7]
 gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T]
 gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
 gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O26:H11 str. 11368]
 gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O111:H- str. 11128]
 gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017]
 gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           145-7]
          Length = 734

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
 gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
          Length = 706

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/699 (49%), Positives = 479/699 (68%), Gaps = 5/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPGG+ RRE RP+E E LISR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E +   LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA+ LSED +L A++FGH++ + VIE I  L     K      + D + 
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPDVNV 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L   +  + +  L  +  I EK  R  Q+D +K  +V+   +E  + +E E+  +   I
Sbjct: 241 ELHNRVQALSEARLGDAYRITEKQERYAQVDTIKADVVTALLAEDETLDENELRDILGSI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K +D ++ G  V VK+L+ D +G+I+LS+K   + T +P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIK---EATAQP 696


>gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis
           HTCC2594]
 gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis
           HTCC2594]
          Length = 769

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/705 (53%), Positives = 510/705 (72%), Gaps = 7/705 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  TV IEW G+ L LETG+IARQ+DGAVLATYGETVVL  V   RS+K+GQDFFPLT
Sbjct: 1   MFDKKTVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAARSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE R TE E L SR+IDR +RPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE---DQGSLDL 176
           D E+ P +V+M+AASAAL +SGLPF GP+  A+V +  +G+YVLNP + +   + G+LDL
Sbjct: 121 DGETEPDIVAMIAASAALTISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGEDGNLDL 180

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-K 235
            V+ TQDAV+MVE EA +L+E+ +L A++F H E + VI AI  LA+  AK+P  +D  +
Sbjct: 181 VVAATQDAVMMVESEAKELTEEQMLGAVMFAHEESRKVIGAIIDLAEQAAKDPWELDPVE 240

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--S 293
           D S   E++  +I +DL  +  I  K  R   ++  + K   ++S    S     +    
Sbjct: 241 DKSAALEKLRGVIGDDLAKAYKITNKAQRQDAVNAARTKAREHYSDLEESDPAEYMGRLK 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + + +++ +VR  +L    R+DGR ++ VR I A VGLL RTHGS+LF RG+TQAI   T
Sbjct: 301 LVKKLESDIVRKAILKDGQRIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++ EQ +D L G   ++FM+HYNF P + GEV R G  SRRE GHG+LA RA+ PVL
Sbjct: 361 LGTKDSEQMIDGLEGLSYSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +GDDF
Sbjct: 421 PDNEEFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGDDF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAG++ GIT++QMD+K+ GI++ IM  AL+QAK GR HIL 
Sbjct: 481 TVLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTKALEQAKAGRAHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++ L  SR ++ +  PR+E M I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +
Sbjct: 541 KMTEALGSSRGEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KI+SS+  EIEAAR+ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++ 
Sbjct: 601 KISSSNADEIEAARKWIEGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMK 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            ERV K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 661 NERVEKPTDVVSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEEL 705


>gi|294085143|ref|YP_003551903.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664718|gb|ADE39819.1| Polyribonucleotide nucleotidyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 709

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/698 (54%), Positives = 513/698 (73%), Gaps = 9/698 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +   E++W G PL LE+G++ARQ+DGAV+ T GET VL T V  +  K GQDFFPLT
Sbjct: 1   MFKIFRKELDWGGTPLVLESGKVARQADGAVMVTLGETTVLCTAVAAQQAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+ENE L+ R+IDR IRPLF K +K ETQVI  V+ H
Sbjct: 61  VNYQEKAFAAGKIPGGFFKREGRPSENETLVCRLIDRPIRPLFPKSFKCETQVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D+E++P + +M+ ASAAL LSG+PF GP+ GA++ +IN +YVLNP +++ D+  LDL ++
Sbjct: 121 DMENNPDIAAMIGASAALTLSGVPFFGPIAGARIGWINDEYVLNPTVEQMDESDLDLVMA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT + VLMVE EA +LSE+V+L A+ FGH+  KPVIEAI  LA+ CAKEP  +  +    
Sbjct: 181 GTMEGVLMVESEAQELSEEVMLGAVNFGHDAIKPVIEAIIDLAESCAKEPRDLPEE--PA 238

Query: 240 LEEEMSQMIKE---DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
               +S ++KE       +  I +K  R   +  ++ +       ++   +   +  + +
Sbjct: 239 ETSTISDILKEFEGAFEAAYKIADKAERQAAVGAVRSEAKDKIGDDY---DAVLVGGLIK 295

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A VVR  +L   VR+DGRD++TVR I ++ G L R HGS+LF RG+TQA+VV TLGT
Sbjct: 296 GLEADVVRGAILKTGVRIDGRDTKTVRAIVSEAGFLPRAHGSALFTRGETQAMVVATLGT 355

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +DEQ +DSL G  R++FM+HYNF P + GE  R+G+P RREIGHG+LA RAI P++P  
Sbjct: 356 GQDEQIIDSLVGEGRSNFMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRAIRPLMPSK 415

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMATVCG SLALMD+GVP+++PVAGIAMGL+K+GDDF +L
Sbjct: 416 EEFPYTVRLVSEITESNGSSSMATVCGGSLALMDSGVPLARPVAGIAMGLIKEGDDFAVL 475

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAG+D+GIT++QMD+KI  I+  IM +AL QA+ GR+HIL EM+
Sbjct: 476 SDILGDEDHLGDMDFKVAGSDAGITSLQMDIKITSITPEIMQIALDQARDGRIHILGEMA 535

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K L+ +R  L +  P++  + IP D+IR++IG GGK+IR I E TGAK++I+DDGTVK+A
Sbjct: 536 KALTSAREVLADSAPKITTLNIPVDKIRDIIGPGGKIIREICETTGAKIDIEDDGTVKVA 595

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           + + A  EAA   IR I   PE+  IY G+VVK +DFGAFV+F GA+DGLVHIS+L   R
Sbjct: 596 AVTGASGEAAVARIRDIVAEPELGVIYDGKVVKTVDFGAFVNFLGAKDGLVHISELQNGR 655

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             KT+D+ KEGDTV VK++ FDDRGK+KLSMK VDQ T
Sbjct: 656 TEKTTDICKEGDTVKVKVIGFDDRGKVKLSMKRVDQET 693


>gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|254782721|sp|B7UJ59|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 711

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 476/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP   A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPNGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 712

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA  LSED +L A++FGH++ + VI+ I++L K   K       +  + 
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAAND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKDETIATLVAEDETLDANELSEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDADK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 711

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
 gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
          Length = 711

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
          Length = 723

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 9   NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 68

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 69  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 128

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 129 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 188

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 189 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 248

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 249 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 308

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 309 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 368

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 369 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 428

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 429 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 488

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 489 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 548

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 549 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 608

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 609 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 668

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 669 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 702


>gi|83950704|ref|ZP_00959437.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
           ISM]
 gi|83838603|gb|EAP77899.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
           ISM]
          Length = 713

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/707 (52%), Positives = 503/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNEVKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y +G+Y+LNP +D+           
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYEDGEYILNPTVDDMHELRSNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + KPV++ I  LA++ AKEP    
Sbjct: 181 LDLVVAGTRDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVVDLIIDLAEVAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S L   +    ++++R +  I +K  R   +   +  + +  + E     +  + S
Sbjct: 241 APDYSDLYAAVKAAGEKEMRAAFAITDKQERTAAVAAARTAIKAALTEEQLE--DANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGRD+ TVR I ++ GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLEASILRGDVVKGGKRIDGRDTTTVRPIVSETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L GT +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGTFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D D
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGD 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F IL+DI GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 FAILTDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMKQALAQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK L+E+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALTEA-SEFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  ++Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIQKAYDMIHSIVAEPEEGQVYDGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ I 
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQETGEEIA 704


>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis Bt4]
          Length = 713

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/704 (48%), Positives = 488/704 (69%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVSADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGK 696
            ERV   +D +KEG  V VK++  D++G+++LS K  +++  G+
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAGQ 706


>gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           115-1]
 gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           115-1]
          Length = 734

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
 gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
           B253]
 gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
          Length = 721

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 13  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 73  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 133 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 193 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 253 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 313 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 373 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 433 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 493 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 553 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 613 EKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 673 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 706


>gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
 gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
          Length = 734

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 686 TDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 719


>gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
 gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
          Length = 713

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/703 (53%), Positives = 506/703 (71%), Gaps = 11/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      ++W    L LETG++ARQ+DG V+AT GET V+A V + ++ K+GQDFFPLT
Sbjct: 1   MFKEVKKTLQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ GA+V Y +G YVLNP +D+           
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGSYVLNPTVDDMHLLRDNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+ED +L A++F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVMFAHEQIQPVIDLIIDLAEDAAKEPFEFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +    +E ++V+  I +K  R   +  +K ++ +  S E     +  + S
Sbjct: 241 PPDYSELFGVVKAAGEEKMKVAYAISDKQERVAAVAAVKDEIKAGLSEEQ--LADANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++++V+R+ ++  K R+DGR  + VR I ++ G+L RTHGS+LF RG+TQA+VV T
Sbjct: 299 ALKKLESQVLRSDVVVNKRRIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L GT +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALQGTYKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D  
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKTALSQAKEGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK +SE+     E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKAISEA-GSFSEHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI +I   PE   +YKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIQKAYDMIYAIVAEPEEGHVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG
Sbjct: 658 ENRRLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETG 700


>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis TXDOH]
 gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           thailandensis E264]
          Length = 713

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/704 (48%), Positives = 488/704 (69%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGK 696
            ERV   +D +KEG  V VK++  D++G+++LS K  +++  G+
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAGQ 706


>gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase/polyadenylase [Shigella dysenteriae
           Sd197]
 gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
          Length = 734

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 475/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 26  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 85

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 86  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 145

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 146 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 205

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 206 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 265

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 266 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 325

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 326 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 385

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 386 QVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 445

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 446 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 505

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 506 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 565

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 566 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 625

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 626 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 685

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D +  G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 686 TDYLLMGQEVPVKVLEVDRQGRIRLSIKEATEQS 719


>gi|254477352|ref|ZP_05090738.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
 gi|214031595|gb|EEB72430.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
          Length = 705

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/695 (52%), Positives = 498/695 (71%), Gaps = 11/695 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG V+AT GET V+A V + +  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGT 181
           V+M+AASAAL +SG PF GP+ GA+V + +G+YVLNP +D+        +  LDL V+GT
Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFTDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           ++AV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP    + D+S+L 
Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEEAAKEPFDFQAPDYSELY 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +    + ++R +  I +K  R   +   ++ + +  S E     +  + S  + ++A 
Sbjct: 241 EAVKAAGETEMRAAFAITDKQERTAAVAAARETIKAALSEEQLE--DANLGSAMKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGRD+ TVR I ++ G+L RTHGS+LF RG+TQA+ V TLGT +DEQ
Sbjct: 299 ILRGDVVKGGKRIDGRDTTTVRQIVSETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  + ILSDI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL EMSK LS
Sbjct: 479 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMSKALS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS+  
Sbjct: 539 ETNA-FSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKIASADG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 TAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETG 692


>gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
 gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
          Length = 711

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/706 (51%), Positives = 497/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    I+W    L LETG++ARQ+DG+V+AT GET V+A V Y R  K GQDFFPLT
Sbjct: 1   MFNVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTYARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y  G Y+LNP +D+        +  
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGYEGGDYILNPTIDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    ++++R +  I +K  R   +   ++ +    + E     +  + S
Sbjct: 241 PDDYSDLSAAVKAAGEDEMRAAFAIADKQERTAAVAAARETIKGKLTEEQLE--DKNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +RDI A+ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEASILRGDVVKTGKRIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G P RRE+GHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMEKALAQAKDGRIHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKALSGA-SDFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANGDAIKKAYDMIYSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEV 703


>gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
 gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
          Length = 712

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/706 (52%), Positives = 498/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    +EW    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNVTKKSMEWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y++G YVLNP +++        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAGCRVGYVDGDYVLNPDVEDMNGLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+ED +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L + +    +  +R +  I +K  R   +   K+ + +  S E     +  + S
Sbjct: 241 PPDYSALYDVVKAAGEAQMRDAYAITDKQERVAAVAAAKEAIKAGLSEEQLE--DPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + VR I  + GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESTVLRGTVVKDGKRIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D +
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLEDDGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 FAILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K  + +  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKAQAGT-GEFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  +IYKG+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDAIQKAYDMIHSIVAEPEEGQIYKGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V+VKLL FDDRGK++L+MK+VDQ TG+ I
Sbjct: 658 ENRRLNHPSDVLKEGQEVFVKLLGFDDRGKVRLAMKMVDQETGEEI 703


>gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
 gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
          Length = 711

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/706 (52%), Positives = 493/706 (69%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      +EW    L LETG++ARQ+DG+V+ATYGET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKEVKKSVEWGEETLTLETGKVARQADGSVIATYGETSVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  VI  V+ H
Sbjct: 61  VHYNEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G+Y+LNP LD+        +  
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPISACRVGFEDGEYILNPELDDMHDLRNKPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +  I+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVKFAHEQIQTPIDLIIALAEECAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D++ L   +    ++ +R +  I +K  R   +   K  + +  + E        + S
Sbjct: 241 APDYADLFAAVKAAGEDAMRDAYAITDKQERTSAVAAAKDAIKAALTEEQLEDEN--LGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR ++ VRDI  + GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLESGVLRGDVVKNGKRIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVAT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G  R++FM+HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALQGMYRSNFMLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D D
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGD 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+ +IM  AL QAK GRLHIL
Sbjct: 479 YAILTDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPDIMEKALAQAKEGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K +S +  +     PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMNKSISSA-GEFSAHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS++   I  A EMI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASANADSIAKAYEMIHSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG  I
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGAEI 703


>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 706

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/692 (49%), Positives = 486/692 (70%), Gaps = 2/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++      +    + +ETG IARQ+ GAV+ +  +TVVL +VV +++ K GQDFFPLT
Sbjct: 1   MFNIVKKTFAYGAHQVTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF   + +E QV+  VM  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           + E  P + +++ ASAA+ +SG+PF+GP+  A+V Y++GQYV+NP   + + SL DL V+
Sbjct: 121 NPEIDPDIAALIGASAAMTISGIPFDGPIGAARVGYVDGQYVVNPTATQLKSSLLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GTQ AVLMVE EA +LSE+V+L A++FGH + + VI+AI++LA    K       +    
Sbjct: 181 GTQAAVLMVESEAKELSEEVMLGAVVFGHQQMQVVIDAINELADEAGKPEWDWTPAARNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +  +++Q+++ +L+ +  I  K +R +++ ++    V   +++  + +   + ++   +
Sbjct: 241 AVHGKLNQLVEAELQEAYRITSKQLRSQRLKEVTAYAVETLTADDDAPDANAVRNMVSAV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR  +L  + R+DGRD+ TVR I+ + G+L R HGSSLF RG+TQAIVV TLGT  
Sbjct: 301 EARIVRGRILAGEPRIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+LSG  R  FM+HYNF P ATGE  R+G P RRE+GHGRLA+RA+  VLP    
Sbjct: 361 DEQIIDALSGEYRERFMLHYNFPPYATGECGRVGTPKRREVGHGRLAKRALLAVLPAPED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGL+K+G+   +L+D
Sbjct: 421 FSYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA   RLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAGEARLHILKQMQGS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R ++  + PR+  M I P++IR+VIG GG VIR I E+TG  ++I DDGT+ IAS 
Sbjct: 541 MSGHREEVSTYAPRLYTMKINPEKIRDVIGKGGAVIRAITEETGTTIDIKDDGTITIASV 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S     AAR  I SIT   EV K+Y G V+K++DFGA V     RDGL+HISQ++ ERV 
Sbjct: 601 SGEAASAARARIESITADVEVGKVYDGTVLKLLDFGAIVSILPGRDGLLHISQIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +D +K+G  V VK+L+ D++G+++LSMK +
Sbjct: 661 AVADYLKDGQKVRVKVLEADEKGRVRLSMKAL 692


>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
           Bu]
          Length = 715

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/697 (49%), Positives = 484/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSEDV+L A++FGH + +  I+AI  L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVRDGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTAAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|253686990|ref|YP_003016180.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259534139|sp|C6DKK7|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 706

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/698 (49%), Positives = 481/698 (68%), Gaps = 2/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+ LSED +L A++FGH++ + VIE I+ L     K      + + + 
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWHAPEVNV 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+ +  + +  L  +  I EK  R  Q+D +K  + +   +E  + N GEI  +  ++
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVEAALLAEDETLNAGEIQEILGNV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+ ++
Sbjct: 361 DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKASE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K +D ++ G  V VK+L+ D +G+++LS+K     T +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPTQE 698


>gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 706

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/690 (49%), Positives = 478/690 (69%), Gaps = 2/690 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP +DE  +  LDL V+
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+ LSED +L A++FGH + + VI+ I+ L     K      + + + 
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNV 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+ +  + +  L  +  I EK  R  Q+D +K  +V+   +E  + N G+I  +  ++
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 716

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/707 (53%), Positives = 504/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV    I+W    L LETG++ARQ+DG+V+AT GET V+A V + R+ K GQDFFPLT
Sbjct: 1   MFDVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARAQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVDGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ GA+V + +G+YVLNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFRGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVTFAHEQIQPVIDLIISLAEEAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S+L   ++   +E +R +  I +K  R   +   ++ +    + E     +G + S
Sbjct: 241 APDYSELSAAVAAAGEEQMRAAFAITDKQERTAAVAAAREAIKEALTEEQLE--DGNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR +  +R I A+  +L RTHGS+LF RG+TQA+ V T
Sbjct: 299 AMKKLEAGILRGDVVKGGKRIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+RIVSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D +
Sbjct: 419 PAATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGN 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM K LSE+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMGKALSETN-EFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS     I+ A EMI SI   PE  +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPDGESIKKAYEMIHSIVAEPEEGQIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
 gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
          Length = 722

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 486/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 11  MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 70

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 71  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 130

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 131 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKASRLDLVVA 190

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 191 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 250

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 251 ALIARVTELAQPELLAAYQIRDKQARSTKLKEVYTATSAKLEEEALAAGTVAADKATVGN 310

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 311 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 370

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 371 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 430

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 431 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 490

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 491 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILR 550

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++ +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 551 KMTEAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 610

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 611 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 670

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 671 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 707


>gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 706

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/690 (49%), Positives = 477/690 (69%), Gaps = 2/690 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +S K GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP +DE  +  LDL V+
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L     K      + + + 
Sbjct: 181 GTEGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWDWHAPEVNV 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+ +  + +  L  +  I EK  R  Q+D +K  +V+   +E  + N G+I  +  ++
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAALQAEDETLNAGDIQEILGNV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
          Length = 715

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/704 (49%), Positives = 489/704 (69%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   + + S LDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI  L +   K       +    
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQAAIDAIHDLVREGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   ++++ + DL  +  I +K  R  ++ ++   + +    E ++      ++  + +
Sbjct: 243 PLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGIV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ER+   +D +K+G  V VK++  D++G+++LS K +  N G P
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALL-NEGAP 705


>gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
 gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
          Length = 707

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/704 (49%), Positives = 473/704 (67%), Gaps = 7/704 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLNPTIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE +   LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GTQ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L     K       +   +
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L   ++ + +  L  +  I EK  R  QI+ +K  +V    +E  S + GEI  +   I
Sbjct: 241 ELHARVAALSESRLGDAYLITEKQERYNQINVIKADVVQALQAEDESLDAGEISDILGSI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P+   
Sbjct: 361 DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+ FI+LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGESFIVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-----DQNTGKP 697
           K +D ++ G  V VK+L+ D +G+++LS+K       D+ T +P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPSQDETTEQP 704


>gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 690

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/691 (53%), Positives = 494/691 (71%), Gaps = 3/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E+++ GR L+LETGR+ARQ+DGAVL + G+TVVL T V  R +K GQDFFPLTVNY
Sbjct: 1   MIRKEVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA GKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  V+  D +
Sbjct: 61  QEKAYAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++V ASAAL +SG+PF GP+  A+V YI+G+YVLNP   +   S LDL V+GT+
Sbjct: 121 NDPDILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
            AVLMVE EA QLSE+++L+A++FGH + +PVIE I  LA+   K      +      L 
Sbjct: 181 QAVLMVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALG 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++ +     L+ +  + EK  R K+++D+++ M   F S+ +      +  + + I+  
Sbjct: 241 VQVREKATPLLQEAYALTEKQARSKRLEDVQQAMAVEFGSDDAG-RGDMVRGLLKKIETG 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD   R+DGRDS+TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ DEQ
Sbjct: 300 IVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G  R+ FM+HYNF P +TGE   +G+P RREIGHGRLA+RAI  VLP  ++FPY
Sbjct: 360 IIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           +LR+VSE+ ES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+G  F +L+DI G
Sbjct: 420 SLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDILG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM  ALQQA  GRLHIL  M+ VLS 
Sbjct: 480 DEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLSR 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L ++ PR+  + I PD+IR+VIG GGKVIR + E+TGA ++I D+GTV IAS    
Sbjct: 540 GRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDGE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
              AA+  I  +T   +V+ IY G+V K+MDFGAFV     RDGL+HISQ+S ERV+   
Sbjct: 600 AGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDVH 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           D +KEG  V VK+L+ D +GKIKLSMK + Q
Sbjct: 660 DHLKEGQAVRVKVLEVDRQGKIKLSMKDIPQ 690


>gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
           4582]
 gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
           4582]
          Length = 706

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/691 (48%), Positives = 471/691 (68%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPTIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      +   ++
Sbjct: 181 GTEGAVLMVESEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAEVGKPKWDWQAPAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K+ +++   ++  S + GEI  +   +
Sbjct: 241 TLHARVAELAEGRLGDAYHITEKQQRYAQVDAIKEDVIAALLAQDESLDAGEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P+   
Sbjct: 361 DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISTPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKFAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 691


>gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 692

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/691 (53%), Positives = 494/691 (71%), Gaps = 3/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E+++ GR L+LETGR+ARQ+DGAVL + G+TVVL T V  R +K GQDFFPLTVNY
Sbjct: 3   MIRKEVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA GKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  V+  D +
Sbjct: 63  QEKAYAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++V ASAAL +SG+PF GP+  A+V YI+G+YVLNP   +   S LDL V+GT+
Sbjct: 123 NDPDILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTR 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
            AVLMVE EA QLSE+++L+A++FGH + +PVIE I  LA+   K      +      L 
Sbjct: 183 QAVLMVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALG 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++ +     L+ +  + EK  R K+++D+++ M   F S+ +      +  + + I+  
Sbjct: 243 VQVREKATPLLQEAYALTEKQARSKRLEDVQQAMAVEFGSDDAG-RGDMVRGLLKKIETG 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD   R+DGRDS+TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ DEQ
Sbjct: 302 IVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G  R+ FM+HYNF P +TGE   +G+P RREIGHGRLA+RAI  VLP  ++FPY
Sbjct: 362 IIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           +LR+VSE+ ES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+G  F +L+DI G
Sbjct: 422 SLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDILG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM  ALQQA  GRLHIL  M+ VLS 
Sbjct: 482 DEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLSR 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L ++ PR+  + I PD+IR+VIG GGKVIR + E+TGA ++I D+GTV IAS    
Sbjct: 542 GRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDGE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
              AA+  I  +T   +V+ IY G+V K+MDFGAFV     RDGL+HISQ+S ERV+   
Sbjct: 602 AGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDVH 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           D +KEG  V VK+L+ D +GKIKLSMK + Q
Sbjct: 662 DHLKEGQAVRVKVLEVDRQGKIKLSMKDIPQ 692


>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
          Length = 702

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/692 (45%), Positives = 459/692 (66%), Gaps = 3/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   + E AGRP  +ETG++A+Q++GAVLA YG+TVVL T    +  ++G DF PLTV+Y
Sbjct: 1   MEVFKTEIAGRPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE +P+E  IL +R+IDR +RPLF K ++N+ Q+I  ++  D  
Sbjct: 61  EERLYAVGKIPGGFIKREGKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSVDQG 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P VV++  AS AL +S +PFEGPV    V  ++G +++NP +++ ++  L L V+GT+
Sbjct: 121 NTPDVVAINGASIALCISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSRLRLVVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LMVE  A++++E+ +++AI+FGH E K +++   ++     K  + +   +   +LE
Sbjct: 181 DAILMVEAGADEVTEEEMINAILFGHEEIKKIVKFQEEIIAKVGKPKMEVPVMEIDPELE 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + + +  ++++  +  I +K  R   +  + +  + +F   +    E EI  V   I  +
Sbjct: 241 KAVREYARDEILKAIRIYDKQEREAYLQKINEDTLLHFQDIYPE-KEKEIAEVLYSILKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++  + +R DGR S  +R IS +VG+L RTHGS LF RG TQ + V TLG   D Q
Sbjct: 300 EVRNMITYEGIRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF P +TGE   +  P RREIGHG LA RA+ P++P    FPY
Sbjct: 360 ILDGLELEESKRFMHHYNFPPYSTGETRMLRGPGRREIGHGALAERALEPMIPPEETFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+SMA+VCGS+LALMDAGVPI  PVAGIAMGL+K  D   ILSDI G
Sbjct: 420 TIRLVSEVLSSNGSTSMASVCGSTLALMDAGVPIKAPVAGIAMGLIKQDDKVTILSDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI GI   I+  AL+QA+ GRL+IL +M   +S 
Sbjct: 480 IEDFLGDMDFKVAGTSKGITAIQMDIKIKGIDAEILKKALEQAREGRLYILEKMLATISS 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PR+    I PD+IR VIG GGK+I  I+ +TG K++I+DDG + IA+ + A
Sbjct: 540 PRPELSPYAPRIFTTVIDPDKIREVIGPGGKMINKIIAETGVKIDIEDDGRIYIAAPNEA 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A +MI++IT   EV K+Y G+V+++ +FGAFV     ++GLVHIS+L+  RV K  
Sbjct: 600 AGEKALDMIKNITQDVEVGKVYLGKVLRITNFGAFVEILPGKEGLVHISKLAKGRVKKVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           DVVK GD + VK+ D D +G+I LS K V Q 
Sbjct: 660 DVVKIGDEILVKVTDIDKQGRINLSHKDVFQE 691


>gi|241761092|ref|ZP_04759181.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374711|gb|EER64172.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 748

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/699 (55%), Positives = 514/699 (73%), Gaps = 2/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+   EI+W G+ L LETG++ARQ+DGAV+AT GETVVL  V   +++K+GQDFFPLT
Sbjct: 1   MFDIKRQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E LISR+IDR IRPLF + + NET VI  VM +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +++M+AASAAL LSG+PF GP+  A+V Y +G+++LNP L++ ++  LDL V 
Sbjct: 121 DGENEPDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+DAV+MVE EAN+L E+V+L+A+ F H   +PVI+AI  LA+  AKEP  + S D S 
Sbjct: 181 ATRDAVMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWELVSYDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++  ++   +  +  K  R + +   K  +   F     +  +  I  + + ++
Sbjct: 241 LAAKVEELCYDNFDKAYRLTRKAERVEALSKAKAVLDEAFPEADPTE-KLRIQKLAKKLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           AK+VRT +L +  R+DGRD +TVR I +QVG L RTHGS+LF RG+TQA+V  TLGT + 
Sbjct: 300 AKIVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADA 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L+G     FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP  A F
Sbjct: 360 EQMIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R++S+ITES+GSSSMATVCG  LALMDAGVP+++PV+GIAMGL+ + D F ILSDI
Sbjct: 420 PYTIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM  AL+QAK GR HIL EMSK L
Sbjct: 480 MGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKAL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R ++    PR+E M++P D+IR+VIG GGKVIR IV  TGAKV+I+DDGTV+++SS 
Sbjct: 540 GEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVRLSSSD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A IEAARE I  I + PEV KIY G+VV ++DFGAFV+F G RDGLVH+S++  ERV K
Sbjct: 600 PANIEAAREWINGIVEEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SDV+ EG  V VK+L+ D+RGK++LSM+VVDQ TG  +
Sbjct: 660 VSDVLSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGAEL 698


>gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
 gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
          Length = 706

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/691 (49%), Positives = 473/691 (68%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E +   LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA+ LSED +L A++FGH++ + VIE I  L     K      + + + 
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEINV 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L + +  + +  L  +  I EK  R  Q+D +K  +V+   +E  + +E E+  +   I
Sbjct: 241 ELHDRVKALSEARLGDAYRITEKQERYAQVDTIKSDVVAALLAEDDTLDENELRDILGSI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQIIDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+L+ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691


>gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
 gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
          Length = 705

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/699 (52%), Positives = 498/699 (71%), Gaps = 11/699 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGT 181
           V+M+AASAAL LSG PF GP+ GA+V + +G+YVLNP +D+        +  LDL V+GT
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +DAV+MVE EA +LSE  +L A+ F H + +PV++ I  LA+  A EP    + D+S L 
Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHEQIQPVVDLIISLAEEAANEPFEFAAPDYSDLY 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +    + ++R +  I +K  R   +   ++ +    S E     +  + S  + ++A 
Sbjct: 241 EAVKAAGETEMRAAFAISDKQERTAAVAAARETIKGALSEEQLE--DANLGSALKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGR ++ +RDI ++ GLL RTHGS+LF RG+TQ +VV TLGT +DEQ
Sbjct: 299 ILRGDVVKTGKRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  + ILSDI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+  IM  AL QAK GRLHIL EM+K L+
Sbjct: 479 GDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILGEMAKALT 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+  +     PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS++ 
Sbjct: 539 EA-SEFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKIASANG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI +I   PE   IY G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 EAIQKAYDMIHAIVAEPEEGAIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           SDV+KEG  V VKLL FDDRGK++LSMK+VDQ TG+ I 
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEIA 696


>gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAALVAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 696


>gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia AU 1054]
 gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia HI2424]
 gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424]
          Length = 715

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/693 (49%), Positives = 483/693 (69%), Gaps = 7/693 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ +  SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|81355362|sp|Q5NQ32|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 748

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/699 (55%), Positives = 513/699 (73%), Gaps = 2/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+   EI+W G+ L LETG++ARQ+DGAV+AT GETVVL  V   +++K+GQDFFPLT
Sbjct: 1   MFDIKRQEIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E LISR+IDR IRPLF + + NET VI  VM +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +++M+AASAAL LSG+PF GP+  A+V Y +G+++LNP L++ ++  LDL V 
Sbjct: 121 DGENEPDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+DAV+MVE EAN+L E+V+L+A+ F H   +PVI+AI  LA+  AKEP  + S D S 
Sbjct: 181 ATRDAVMMVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAKEPWELVSYDDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++  ++   +  +  K  R   +   K  +   F     +  +  I  + + ++
Sbjct: 241 LAAKVEELCYDNFDKAYRLTRKAERVDALSKAKAVLDEAFPEADPTE-KLRIQKLAKKLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           AK+VRT +L +  R+DGRD +TVR I +QVG L RTHGS+LF RG+TQA+V  TLGT + 
Sbjct: 300 AKIVRTAILKEGRRIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADA 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L+G     FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP  A F
Sbjct: 360 EQMIDGLTGLHYERFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R++S+ITES+GSSSMATVCG  LALMDAGVP+++PV+GIAMGL+ + D F ILSDI
Sbjct: 420 PYTIRVLSDITESNGSSSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ GIT++QMD+K+ GI+E IM  AL+QAK GR HIL EMSK L
Sbjct: 480 MGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKAL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R ++    PR+E M++P D+IR+VIG GGKVIR IV  TGAKV+I+DDGTV+++SS 
Sbjct: 540 GEVRSEISNLAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAKVDIEDDGTVRLSSSD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A IEAARE I  I + PEV KIY G+VV ++DFGAFV+F G RDGLVH+S++  ERV K
Sbjct: 600 PANIEAAREWINGIVEEPEVGKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SDV+ EG  V VK+L+ D+RGK++LSM+VVDQ TG  +
Sbjct: 660 VSDVLSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGAEL 698


>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 715

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/693 (48%), Positives = 484/693 (69%), Gaps = 7/693 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 243 ALIARVTEIAQPELLAAYQIRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
          Length = 715

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/706 (49%), Positives = 491/706 (69%), Gaps = 9/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   + + S LDL V+
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI  L +   K          ++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEWDWQPAAKNE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   ++++ + DL  +  I +K  R  ++ ++   + +    E ++      ++  + +
Sbjct: 243 PLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            ER+   +D +K+G  V VK++  D++G+++LS K +  D  +G P
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAASGAP 708


>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei K96243]
 gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1710b]
 gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 668]
 gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1106a]
 gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei DM98]
 gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 14]
 gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 91]
 gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 9]
 gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei B7210]
 gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 7894]
 gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 112]
 gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei BCC215]
 gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 668]
 gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 713

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/697 (48%), Positives = 482/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
           ATCC 19624]
 gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
           ATCC 19624]
          Length = 717

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/699 (48%), Positives = 479/699 (68%), Gaps = 2/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQS GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKITKTFQWGQHTVTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+ +  
Sbjct: 63  VDYLEKSYAAGKIPGSFFKREGRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIPAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QLSE+++L A++FGH++ K  I AI  L +   K      +     
Sbjct: 183 GTETAVLMVESEALQLSEEIMLGAVVFGHDQGKIAINAIHDLVRDAGKPAWDWKAPAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++  + +E LR +  I  K  R +   +    + +  + +   +++ ++  +  DI
Sbjct: 243 ALIAKVVALGEEKLRAAYQIRNKQSRTQACREAYAAVKAGLAEQGVEFDDVKVEGLLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A+ VR  +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT  
Sbjct: 303 EARTVRGQILAGEPRIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LM+AGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLKAHVAGIAMGLIKEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL QAK  R+HIL +M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQAA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++ +F PR+  M I P++IR+VIG GG  IR + E+TG +++I +DGT+ IAS+
Sbjct: 543 VGEAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTQIDIAEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ E A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 ESAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K +D + EG  V VK+L+ D++G++KLSMK + +   +P
Sbjct: 663 KVTDYLSEGQIVKVKVLETDEKGRVKLSMKALLERPEQP 701


>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           atrosepticum SCRI1043]
 gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 706

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/698 (49%), Positives = 476/698 (68%), Gaps = 2/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  ++ K GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP +V+M+ ASAAL LSG+PF GP+  A+V Y+N QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EA  LSED +L A++FGH + + VIE I+ L     K      +   + 
Sbjct: 181 GTQGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPAVNV 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+ +  + +  L  +  I EK  R  Q++ +K  +V+   +E  + N GEI  +  +I
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKTDVVAALQAEDETLNAGEIQEILGNI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRGRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQNIDELTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTV+IAS+
Sbjct: 541 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVRIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K +D ++ G  V VK+L+ D +G+++LS+K  +  T +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANPQTQE 698


>gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia J2315]
 gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 713

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/693 (49%), Positives = 482/693 (69%), Gaps = 7/693 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+    SLDL V+
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSEDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 181 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 241 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 301 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 541 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 601 TIASTSSDGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693


>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1]
 gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1]
          Length = 701

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/702 (50%), Positives = 488/702 (69%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++HT  +++  + + LETGR+ARQ++GAV+ TYG+TVVL T V + S++ GQDFFPL+
Sbjct: 1   MFNIHTKSVQFGEKTITLETGRVARQANGAVMVTYGDTVVLVTAVAETSMRAGQDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ +A GKIPGG+++RE+RP+E E+L SR+IDR IRPLF K + NETQV+  V+ +
Sbjct: 61  VHYQEKFWAAGKIPGGFIKRETRPSEREVLTSRLIDRPIRPLFPKGFMNETQVVAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +    + +++  SAAL LSG+PFEGP+ GA+V +I+G+ VLNP +D+   S LDL V+
Sbjct: 121 DPDYPSDIAALIGCSAALALSGVPFEGPIGGARVGFIDGKPVLNPTVDQLAASRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AV MVE E + LSED +LD ++F H   +PVI AI +L     K   V++    ++
Sbjct: 181 GTRSAVTMVESEVDFLSEDEMLDCVMFAHESFQPVITAIEELVAEAGKPRWVVEPVQVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW----NEGEIVSV 294
            L  EM+      +  +  IPEK  R + +  +K   +    +            E+ S+
Sbjct: 241 ALLAEMNDKFAAQVTEAYAIPEKMARYEAVAQVKAAAMEALGTIEVDGQSVKRSEEVASL 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F+ I+++ +R  +L    R+DGR    +R I+ +V +L R HG++LF RG+TQAI  VTL
Sbjct: 301 FKKIESRTLRQNVLQ-GKRVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTL 359

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  DEQ V++LSG  R+ F ++Y F P   GE  RMGAP RREIGHG+LA RA+  ++P
Sbjct: 360 GTSRDEQIVETLSGEYRDRFYLNYTFPPYCVGETGRMGAPGRREIGHGKLATRALTAIVP 419

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYTLRI SEITES+GSSSMATVCG+ LA+ DAGVPI  PVAGIAMGLVK+GD + 
Sbjct: 420 SAEVFPYTLRITSEITESNGSSSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEGDAYA 479

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAG   GITA+QMD+KI GI+  IM  AL+QA+ GRLHIL E
Sbjct: 480 VLSDILGDEDHLGDMDFKVAGNADGITALQMDIKITGITREIMAKALEQARAGRLHILGE 539

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M K ++  R ++  + PR+  M I PD+IR VIG GGKVIR I E+TG  ++I+DDGT++
Sbjct: 540 MGKAMTTHRAEMSAYAPRIHTMKIHPDKIREVIGSGGKVIRSITEETGCAIDIEDDGTIR 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IASS  A  E A ++I+SI    E  ++Y+G+VV++ DFGAFV+    +DGLVHISQL+ 
Sbjct: 600 IASSDQASAEQAVKIIKSIVAEVEKGQVYEGKVVRITDFGAFVNILPNKDGLVHISQLAN 659

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            RV   +DVVKEGD V VK+LD D +G++KL+MK +++   +
Sbjct: 660 RRVQNVTDVVKEGDVVTVKVLDVDRQGRVKLTMKEMEEGAAE 701


>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
 gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
          Length = 713

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/697 (48%), Positives = 481/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKV GT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVVGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans
           LB400]
 gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
           xenovorans LB400]
          Length = 716

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/706 (48%), Positives = 487/706 (68%), Gaps = 9/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  R+ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   +  + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K          ++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    + ++      ++  + +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM +AL QAK GRLHIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAKEGRLHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +   L ++ PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            ER+   +D +K+G  V VK++  D++G+++LS K +  D   G P
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAANGAP 708


>gi|56698213|ref|YP_168585.1| polynucleotide phosphorylase/polyadenylase [Ruegeria pomeroyi
           DSS-3]
 gi|81348968|sp|Q5LN23|PNP_SILPO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56679950|gb|AAV96616.1| polyribonucleotide nucleotidyltransferase [Ruegeria pomeroyi DSS-3]
          Length = 714

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/707 (52%), Positives = 505/707 (71%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV T  ++W    L LE+G+IARQ+DG+V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFDVTTKSMQWGEETLTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG+PF GP+ G +V Y++G+YVLNP +D+        +  
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ F H + +PV++ I   A+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHAQIQPVVDLIVSFAEQCAKEPFDFT 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +E +R +  I +K  R   +   ++ + +  + E     +G + S
Sbjct: 241 PPDYSDLYAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTEEQ--LADGNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGRD+ TVR I A+ GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLEAGILRGDVVKGGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGL+ + D  
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALSQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 AEMNKALSGA-ADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE  ++Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDSIKKAYDMIWSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ IV
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIV 704


>gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
 gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
          Length = 711

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/706 (51%), Positives = 496/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     IEW    L LETG++ARQ+DG+V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR +RPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL +SG PF GP+ G +V Y  G+YVLNP +D+        +  
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAGCRVGYEGGEYVLNPTVDDMQDLRLNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H+  +PV++ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDTAKEPFDFA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +    + ++R +  I +K  R   +   +  +++  + E     +  + S
Sbjct: 241 PADYSELSAAVKAAGETEMRAAFAISDKQERTSAVSAARDTIMAALTDEQKE--DPNLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++  ++R  ++    R+DGR ++ +RDI ++ GLL RTHGS+LF RG+TQ +VV T
Sbjct: 299 AMKGLEGSILRGDVVKTGTRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GE  R+G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++ +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMAKAITGA-QDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEV 703


>gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia MC0-3]
 gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 715

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/693 (49%), Positives = 483/693 (69%), Gaps = 7/693 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ +  SLDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAAKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 715

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/693 (48%), Positives = 483/693 (69%), Gaps = 7/693 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL E+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 243 ALIARVTEIAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695


>gi|260574490|ref|ZP_05842494.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
 gi|259023386|gb|EEW26678.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
          Length = 711

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/706 (52%), Positives = 506/706 (71%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    I+W G  L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNVTRKSIQWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKTAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER YA GK+PGG+ +RE+RP+E E L SR+IDR IRPLF   +KNE  +I+ V+ H
Sbjct: 61  VHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +++M+AASAAL +SG+PF GP+  A+V +  G YVLNP +++ Q         
Sbjct: 121 DLVNEPDILAMIAASAALTISGVPFMGPIGAARVGFSKGAYVLNPDVEDMQKLRENPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL ++GT+DAV+MVE EA +LSED +L A+ FGH   +PVI+ I   A+ CAKEP    
Sbjct: 181 LDLVIAGTKDAVMMVESEAYELSEDEMLGAVKFGHEAMQPVIDLILDFAEDCAKEPFDFA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S L   +    +  +R +  I +K  R   ID     + +  + E  +     + S
Sbjct: 241 PPDYSALYAAVKAAGETQMRAAFAIRDKQDRTNAIDAASAAIKAALTDEQKADEN--LGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ ++R  +++   R+DGRD++TVR I+++ G+L RTHGS+LF RG+TQ +V+ T
Sbjct: 299 AIKKLESSILRGDIINGGARIDGRDNKTVRPITSETGILPRTHGSALFTRGETQGLVITT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT EDEQ +D+L G  R++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P   +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PPATEFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGR 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GRLHIL
Sbjct: 479 FAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPAIMEQALAQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK L+  +     + P++E + IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMSKALTGPQA-FSAYAPKIETLTIPTDKIREVIGSGGKVIREIVELSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASSS   I+ A ++I SI   PE+ +IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASSSAEAIKKAYDLIWSIVAEPEIGQIYTGRVVKLVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +++R+   ++ +KEG  V VKLL FDDRGK++L MK+VDQ TG  I
Sbjct: 658 ASKRLQHPNEYLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGAEI 703


>gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 711

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 477/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA  LSED +L A++FGH++ + VI+ I+ L K   K       +  + 
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K ++ +   +E  + +  EI  +   I
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATLVAEDETLDANEIGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKFAIRRIEEITAEIEVGRVYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
 gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
          Length = 713

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/697 (48%), Positives = 482/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K           +
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 VLNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
 gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
          Length = 713

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/693 (48%), Positives = 483/693 (69%), Gaps = 7/693 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ + S LDL V+
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL E+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 181 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 241 ALIARVTEIAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 421 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 541 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 601 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693


>gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli]
          Length = 711

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/696 (48%), Positives = 475/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TL T  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLA MDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLASMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
          Length = 708

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/691 (49%), Positives = 480/691 (69%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K+GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I  V+  
Sbjct: 61  VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL +SG+PF GP+  A+V YI+ QYVLNP +DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSISGIPFNGPIGAARVGYIDDQYVLNPTVDELKSSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT  AVLMVE EA+ L+E+ +L A++FGH + + VIE I+ LA    KE      +    
Sbjct: 181 GTSSAVLMVESEADLLTEEQMLGAVVFGHEQQQIVIENINALAAETNKEKWDWQPEAINE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L   ++++ ++ L  +  I EK  R   +D +K+ + +   +E+ S +  EI  +   +
Sbjct: 241 ELHSRIAELAEQRLGDAYRITEKQERYTNVDAIKEDVTNTLLAENESLDVAEINDILSGL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + KVVRT +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKKVVRTRVLKGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G   + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQVIDELMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNQSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ DD+++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDDYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILTIMEEA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R ++ EF PR+  + I PD+I++VIG GG VIR + E+TG  + IDDDGTVKIA++
Sbjct: 541 INRPREEISEFAPRIHTIHINPDKIKDVIGKGGSVIRALTEETGTTIEIDDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             ++ EAA   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DSSKAEAAIRRIEDITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAEKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+L+ D +G+I+LS+K 
Sbjct: 661 KVTDYLQLGQEVPVKVLEIDRQGRIRLSIKE 691


>gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
 gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
          Length = 716

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/697 (48%), Positives = 492/697 (70%), Gaps = 3/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    +++    L +ETG I RQ+DGAV+ +YG+TVVL T V +++ ++GQDFFPLT
Sbjct: 9   MFNIVKKSVKFGDNTLTIETGEIGRQADGAVMVSYGDTVVLVTAVGNKNAREGQDFFPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L  R+IDR +RPLF K + NE Q++  VM  
Sbjct: 69  VDYQEKTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPLRPLFPKNFYNEIQIVATVMSS 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +++ ASAAL +SG+PF GPV  ++V YI+ ++V+NP   +     LDL V+
Sbjct: 129 DSEIDSDIPAIIGASAALAISGIPFYGPVGASRVGYIDEKFVINPTKTQLVDSELDLVVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G+  AVLMVE EA +L E V+LDA++ GH   +PVI+ I++ AK  AK+P    +++ +K
Sbjct: 189 GSDAAVLMVESEAKELPEKVMLDAVLAGHKAMQPVIKMINEFAKEAAKDPWDWTAQETNK 248

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
            L  ++ ++  +DL  +  I  K  R +++ ++K K+++  ++E+++ NE   I + F +
Sbjct: 249 DLVSKIEKIAAKDLEKAFAIKAKGERSEKLSEIKDKVLAEVANENTTPNEMNAIKNEFFN 308

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++K+VR  +LD   R+DGRD+ TVR I  + G+L R HGS+LF RG+TQAIVV TLGT 
Sbjct: 309 LESKIVRNKILDGDPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTG 368

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+L G  ++ FM+HYNF P ATGE  R+G P RREIGHG+LA+R +   LP   
Sbjct: 369 RDEQIIDALQGEFKDRFMLHYNFPPYATGETGRVGTPKRREIGHGKLAKRGLSAALPSKE 428

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA++CG ++A+MDAGVP++  VAGIAMGL+K+ +   +L+
Sbjct: 429 DFDYTIRLVSEITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGLIKEDNRVAVLT 488

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD+GITA+QMD+KI GI+  IM +AL QA+ G  HIL  M K
Sbjct: 489 DILGDEDHLGDMDFKVAGTDNGITALQMDIKITGITSEIMQVALSQAREGIDHILKIMKK 548

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L   R ++ +F P++  + I PD+IR+VIG GG VI+G+  +TGA ++IDDDG VK+A 
Sbjct: 549 TLKAPRTEMSQFAPQILTIKIHPDKIRDVIGKGGAVIKGLAAETGATIDIDDDGLVKVAC 608

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++    +AA + I+ IT   EV+++Y G+V+K++DFGA V     +DGL+HISQ++ ER+
Sbjct: 609 TNGESGQAAIDRIKEITADVEVDQVYDGKVIKILDFGAIVSLLPGKDGLLHISQIAHERI 668

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
               D + EGD V VK+++ DD+G++++S K + +  
Sbjct: 669 KAVKDHLSEGDEVKVKVIEVDDKGRVRVSAKALIEPP 705


>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
          Length = 713

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/697 (48%), Positives = 480/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ +   LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
 gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
          Length = 714

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 473/699 (67%), Gaps = 2/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  ++ K GQDFFPLT
Sbjct: 1   MLNPIVKKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE Q+I  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + +  P +V+++ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVHPDIVALIGASAALSLSGLPFNGPIGAARVGYLNDQYVLNPTTDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EA  LSED +L A++FGH + + VI+ I+ L     K       +  ++
Sbjct: 181 GTQGAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIDQINALVAEAGKPRWDWKPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  ++ + +  L  +  I EK  R  Q+  +K +  +   +E +S ++ EI  +   +
Sbjct: 241 SLQTRIAALAESRLSEAYQITEKQERYAQVGVIKSETTAALLAEDASLDDNEIGDLLHAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L    R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRILSGAPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P   GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQNLDELMGEKTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKADA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISTPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K +D ++ G  V VK+L+ D +G+++LS+K   +   +P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQAAEP 699


>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) (PNPase) (CAP87K) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 709

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/691 (48%), Positives = 476/691 (68%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K+GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G++PG + RRE RP E E L++R+IDR +RPLF   + NE Q++  V+  
Sbjct: 61  VNYQERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASA L LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL VS
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  AVLMVE EA+ L+E+ +L A++FGH + + VI+ I+ LA    KE      +  + 
Sbjct: 181 GTAGAVLMVESEADILTEEQMLGAVVFGHEQQQVVIDNINALAAEAGKEKWNWVPESVNQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + ++ + ++ L  +  I EK  R  Q+D +K+++ +    +  +  E EI  +   +
Sbjct: 241 ALHDRVAGLAEDRLGDAYRITEKQERYAQVDAIKEEVTAALLEQDEALEEAEIHEILGSL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + KVVR+ +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKKVVRSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVAAVMPKANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAISRIEEITAEIEVARIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 661 KVADYLQVGQEVSVKVLEIDRQGRVRLSIKE 691


>gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
 gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
          Length = 689

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/689 (46%), Positives = 462/689 (67%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           ++  E+E AGRPL +E G++A+Q++GAVL  YG+TVVL T       ++G DFFPLTV+Y
Sbjct: 1   MNRFEMELAGRPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+ + IL +R+IDR IRPLF K ++N+ Q++  V+  + +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           ++P + +M+ AS AL +S +PF GP+ G +V  +N ++V+NP  ++ +  +L+L V+G+ 
Sbjct: 121 NAPELAAMIGASCALTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSH 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           DAV+MVE  AN+L EDV+LDAI+FGH E K ++E    +   C KE           ++E
Sbjct: 181 DAVMMVEAGANELPEDVILDAILFGHEEIKRLVEFQQGIQADCGKEKSEPKLFLVPHEME 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +    K+ L  +   P+K  R   I ++    + +F   +   +  EI     D++  
Sbjct: 241 EAIRDYAKDRLDAAVRNPDKLDRDAHIAEVTTDTMEHFLELYPEMD-KEIAIAIHDLEKS 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR ++  +K+R DGR+ E VR +S +VGLL RTHGS LF RG TQ + V TLG+  DEQ
Sbjct: 300 VVRHMITHEKIRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 360 VIDGLGPETTKHYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSIEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSM +VCGS+L+LM+AGVPI +PV+G+AMGLVK+GD + IL+DI G
Sbjct: 420 TIRLVSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKEGDQYTILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+K+ G+S  I+  ALQQAKRGR  IL +M + + +
Sbjct: 480 MEDALGDMDFKVAGTTEGITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLECIDK 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              +L  + PRVE + I  D+IR+VIG GGKV++ I+++TG  ++I +DG + I S+   
Sbjct: 540 PAAELSPYAPRVETIKIKVDKIRDVIGSGGKVVKKIIDETGVDIDIHEDGNIFITSNDAE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++ A++MI  I    EV +IY G+V ++M FGAFV     ++GL HISQL+  RV K  
Sbjct: 600 GMKKAKQMIEDIVREVEVGEIYTGRVTRLMKFGAFVEVLPGKEGLCHISQLAKHRVEKVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVV+ GD + VK+++ DD+G+I LS K V
Sbjct: 660 DVVQVGDQLQVKVVEIDDKGRINLSHKAV 688


>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 707

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/704 (49%), Positives = 488/704 (69%), Gaps = 9/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG IARQ+ GAV+ +  +TVVLATVV    +K GQDFFPLT
Sbjct: 1   MFNKVSKTFQYGQHTVTLETGEIARQASGAVVVSMDDTVVLATVVAKDDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA G+IPG + +RE RP+E E L SR+IDR IRPLF   Y NE QVII+V+  
Sbjct: 61  VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YI+GQYVLNP   +     LDL V+
Sbjct: 121 NPEIDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA +L EDV+L A++FGH + K VI+AI +L     K  +         
Sbjct: 181 GTEQAVLMVESEAKELPEDVMLGAVVFGHEQMKVVIDAIDELVSEGGKPEVEWAPPARNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
           +L   ++++ + +LR +  I +K  R  ++  + +K+    +SE  +      +  E+ +
Sbjct: 241 ELIAAVTRIAEPELRKAYQIRQKQARSSELRHIYEKVNQTLASEAEAKGAAAPDSVEVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A +VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEAGIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D+L G   + FMMHYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVACL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEI ES+GSSSMA+VCG SLALMDAGVP+   VAGIAMGL+K+G+ F
Sbjct: 421 PSQDEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKTHVAGIAMGLIKEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+ GR+HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIQGITKEIMQVALAQAREGRMHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + + + + +L +F PR+  M I P++IR+VIG GG VIR + E+TGA+++I+DDG V
Sbjct: 541 KMQEAMPQFKTELSDFAPRLITMRINPEKIRDVIGKGGAVIRALTEETGAQIDINDDGIV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A  + A+  I  +T   E  K Y G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVETGKTYDGTVLKLLDFGAIVQILPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTG 695
           +ERV   SD ++EG +V VK+L+ D+RG+IKLSMK V  ++N  
Sbjct: 661 SERVNAVSDYLEEGQSVRVKVLETDERGRIKLSMKAVVAEENPA 704


>gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
 gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
          Length = 716

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/706 (48%), Positives = 487/706 (68%), Gaps = 9/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   +  + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K       +    
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWKPAAKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    + ++      ++  + +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +   L ++ PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            ER+   +D +K+G  V VK++  D++G+++LS K +  D   G P
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAANGAP 708


>gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/696 (48%), Positives = 474/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  + 
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + +   ++E  + +  E+  +   I
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLTAEDDTLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 706

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/691 (48%), Positives = 469/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DAVLMVE EA  LSED +L A+IFGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTADAVLMVESEAQILSEDQMLGAVIFGHEQQQVVIENINALVAEVGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +     ++  S +  EI  +  D+
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLDASEIQDILGDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
 gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
          Length = 710

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/706 (51%), Positives = 496/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      I+W    L LETG++ARQ+DG V+ATYGET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKEVKKSIQWGEETLTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  VI  V+ H
Sbjct: 61  VHYNEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+   +V + +G Y+LNP +D+           
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAACRVGFEDGDYILNPEMDDMHKLRENPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEEEMLGAVEFAHAQIQPVIDMIVDLAEDAAKEPFNFS 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S L + ++   ++ +R +  I +K  R   + D +  + +  S E        + S
Sbjct: 241 APDYSDLSKAVAAAGEKQMRAAFAISDKQERTTAVSDARTAIKAALSEEQLGDEN--LGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +R+I ++ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLEASILRGDVVKTGKRIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +DSL G  +++F++HYNF P + GEV R G P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDSLQGMYKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +   +
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIMEDSGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPAIMKEALAQAKVGRIHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K +S S  +  E  P++E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKAMS-STGEFSEHAPKIETMQVPVDKIREVIGSGGKVIREIVEVSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASS+   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G +DGLVH+SQ+
Sbjct: 598 IKIASSNAEAIKKAYDMIWSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKKDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703


>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 712

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 478/702 (68%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE Q+I  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  L+ED +L A++FGH + + VIE I+ LA    KE      +  ++
Sbjct: 181 GTESAVLMVESEAELLTEDQMLGAVVFGHEQQQIVIENINSLAAEAGKEKWDWAPEPINQ 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM----VSYFSSEHSSWNEGEIVSV 294
            L + ++++ +  L  +  I EK  R  Q++ +K+++    ++  + +     EGE++  
Sbjct: 241 SLHDRVAELAESRLGDAYRITEKQERYAQVNIIKEEVSVVILAESAEKGVELEEGEVLDA 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
              ++  VVR  +L  + R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TL
Sbjct: 301 LSGLEKNVVRGRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P
Sbjct: 361 GTERDAQVIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
             ++FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F+
Sbjct: 421 NASEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFV 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL+ 
Sbjct: 481 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQIALNQAKGARLHILSV 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +   R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVK
Sbjct: 541 MEQAIESPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA++   +   A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ 
Sbjct: 601 IAATDGDKARHAISRIEEITAEVEVGRIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +RV K +D ++ G  V VK+L+ D +G+I+LSMK     T +
Sbjct: 661 KRVEKVTDYLQVGQEVPVKVLEIDRQGRIRLSMKEAVATTDE 702


>gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus
           Ueda107]
 gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus
           Ueda107]
          Length = 710

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/698 (49%), Positives = 482/698 (69%), Gaps = 4/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++  + + LETGRIARQ+ GAVL + GE  VL TVV  +    GQDFFPL+V
Sbjct: 1   MNPIIKKFQYGNQTVTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+ YA G+IPGGY +RE RP+E E L SR+IDR IRPLF + + NE QVI  V+  D
Sbjct: 61  HYQEKAYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVSTD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQ-GSLDLFVS 179
            +  P + +M+  SAAL +SG+PF GP+  A+V Y  G+ Y+LNP   + +   LD+ V+
Sbjct: 121 KKQDPDIAAMIGTSAALAVSGIPFNGPIGAARVGYTQGEGYILNPSYKQLETSELDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+DAVLMVE EA +L ED++L A+++GH E + VI+A ++LA+   K         + +
Sbjct: 181 GTKDAVLMVESEAKELPEDIMLGAVLYGHQEMQAVIQACAELARDAGKARWDWQPVPENT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L+  +       +  +  I +K  R  ++ +L+ + V+ F++E S  +   + S+F  +
Sbjct: 241 ELKTAIKAAFGVAIGDAYRITDKAERYNRLGELRSEAVAQFATEESGISADAVKSLFGTL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR+ ++  + R+DGRD++TVR I+  VG+L + HGS+LF RG+TQA+VV TLG   
Sbjct: 301 EYNIVRSRIVANEPRIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G ++  F++HYNF P + GE  RMG+  RREIGHGRLA+R +  VLP+   
Sbjct: 361 DVQIIDQLEGEKKEAFLLHYNFPPYSVGECGRMGSTGRREIGHGRLAKRGVQAVLPKAES 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYTLR+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ + F +L+D
Sbjct: 421 FPYTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT SG+TA+QMD+KI GI+E IM +AL+QA   RLHIL EM+KV
Sbjct: 481 ILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAARLHILGEMNKV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           LS+SR  + E  PR E + I PD+IR++IG GG  IR I E+T + ++IDDDGTVK+ + 
Sbjct: 541 LSQSRTAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETNSSIDIDDDGTVKVYAD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++AA   I +I    E+  IY+G VV+++DFGAFV+F   +DGLVHISQ++ ERV 
Sbjct: 601 DNEALQAALNRIGAIVAEAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIADERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTG 695
             SD +KEG  V VK LD D RG+IKLS+K  + +  G
Sbjct: 661 NVSDYLKEGQVVKVKCLDVDQRGRIKLSIKEALAEEAG 698


>gi|58040019|ref|YP_191983.1| polynucleotide phosphorylase/polyadenylase [Gluconobacter oxydans
           621H]
 gi|81351767|sp|Q5FQL9|PNP_GLUOX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58002433|gb|AAW61327.1| Polyribonucleotide nucleotidyltransferase [Gluconobacter oxydans
           621H]
          Length = 716

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/701 (55%), Positives = 516/701 (73%), Gaps = 5/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD    EIEWAGRPL LETG++ARQ+DGAV+ TYG+TVVL T V  +S+K GQDFFPLT
Sbjct: 1   MFDYFRKEIEWAGRPLILETGKVARQADGAVMITYGDTVVLCTAVGAKSVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE RP+E E+L +R+IDR IRPLF + ++NE Q+   V+ +
Sbjct: 61  VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNARLIDRPIRPLFPENFRNEVQITATVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +VS++  SAAL LSG+PF GPV  A++  I+G+ V+NP  DE    +LDL V+
Sbjct: 121 DNENDPALVSLIGCSAALTLSGIPFFGPVACARIGRIDGKLVVNPTHDEIKDSTLDLMVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           GT + VLMVE EA++LSE+ +L+A+  GH   +PVI+AI  LA+  AK P  +   +K+ 
Sbjct: 181 GTAEGVLMVESEASELSEETMLEAVTLGHTSFQPVIDAIIALAEHAAKAPWDLPSLTKEE 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L + + ++  + +  +    +K  R K++ + K ++    + E           + ++
Sbjct: 241 IALRKRVEKVGNKLMADAYKERQKQARYKKVAEAKDRINEILADEGLDVELA--KPMLKE 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A+VVR  +L   +R+DGRD +TVR I A+VG+L R HGSSLF RG+TQA+VV TLGT 
Sbjct: 299 LEAQVVRGSILKTGIRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTG 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L G  R++FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   
Sbjct: 359 QDEQIIDALEGEYRSNFMLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRAIHPLLPSKE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMATVCGSSLALMDAGVP+ +PVAGIAMGL+K+   + +LS
Sbjct: 419 AFPYTMRVVSEITESNGSSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIKEDRGYAVLS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI  I+  IM +AL+QA+ GR+HIL EM+K
Sbjct: 479 DILGDEDHLGDMDFKVAGTADGVTALQMDIKITSITPEIMKIALEQAREGRIHILGEMAK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R ++    P++  +++P ++IR+VIG GGKVIR IVE +GAKV+I DDGTV IA+
Sbjct: 539 ALTEGRGEVSGNAPKITTISVPKEKIRDVIGSGGKVIREIVEYSGAKVDIGDDGTVTIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S+  + + A   I  I   PE+ +IY+G+VVK  DFGAFV+F G RDGLVHIS+L+  RV
Sbjct: 599 SNDEQAQKAIARIEGIVAEPEIGRIYEGKVVKTADFGAFVNFLGPRDGLVHISELAEGRV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           AKTSDVVK+GD V VK++ FDDRGK+KLSM+VVDQ TG  I
Sbjct: 659 AKTSDVVKQGDAVKVKVIGFDDRGKVKLSMRVVDQATGADI 699


>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis EO147]
 gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis C6786]
          Length = 714

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/697 (49%), Positives = 487/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKVVKEFQWGQHKVRLETGEIARQASGAVLVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWNWQPAAKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
            L   ++++ + DL+ +  I EK  R  ++ ++     +  + E ++ N        + +
Sbjct: 243 ALIARVTELAQADLQAAYQIREKQSRSTKLKEVYAAATAKLAEEAAASNAEAADAATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++ ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 711

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/696 (48%), Positives = 473/696 (67%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  + 
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 696


>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
 gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
          Length = 707

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 483/702 (68%), Gaps = 5/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG IARQ+  AV+    +T V  T V  + +K+GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASA L LSG+PF GP+  A+V +IN QYVLNP  DE + S LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT +AVLMVE EA+ LSE+ +L A++FGH++ + VI+ I++L K   KE      +  + 
Sbjct: 181 GTDNAVLMVESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + ++Q+ +  +  +  I EK  R  Q+D +K+++ +   +E  + +  E+  +   +
Sbjct: 241 ALHDRVAQLAESRMGDAYRITEKQERYAQVDLIKEEVTAVLVAEDENVDVSEVTDILASL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +VVR+ ++  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKQVVRSRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G   + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A 
Sbjct: 361 DAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDHAD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+DF++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGEDFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R ++ EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INGPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGIKAKEAIRRIEDITAEVEVGRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK---VVDQNTGKP 697
           K +D ++ G  V VK+L+ D +G+I+LSMK     ++ + +P
Sbjct: 661 KVTDYLQMGQEVPVKVLEIDRQGRIRLSMKEAVATEEASAQP 702


>gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC
           BAA-895]
 gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895]
          Length = 722

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/694 (48%), Positives = 476/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 14  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 74  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 134 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I+ L K   K       +  ++ L
Sbjct: 194 EAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNEAL 253

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 254 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAALVAEDETLDENELGEILHAIEK 313

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 314 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 373

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +FP
Sbjct: 374 QVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMDKFP 433

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI 
Sbjct: 434 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDIL 493

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 494 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 553

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 554 APRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 613

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 614 EKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 673

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 674 TDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 707


>gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638]
 gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638]
          Length = 711

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/696 (49%), Positives = 475/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VIE I  L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENIKDLVKEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  QID +K + ++   +E  S +  E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQIDVIKSETIATLVAEDESLDANELSEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   VR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQNIDELMGDRTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 696


>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           ATCC 23344]
 gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           SAVP1]
 gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10229]
 gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10247]
 gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
 gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           SAVP1]
 gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
          Length = 713

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/697 (48%), Positives = 483/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W  + ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP  ++ + S LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++     +    E  +      ++  + +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV  +Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
 gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
          Length = 706

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/691 (48%), Positives = 469/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  LSED +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAAAVLMVESEAQILSEDQMLGAVVFGHEQQQIVIENINALVAQAGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  + +   ++  + N GEI  +  D+
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTAVLLAQDETLNAGEIHDILGDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  D+F++LSD
Sbjct: 421 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKDDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVNRIYDGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVKVKVMEVDRQGRIRLSIKE 691


>gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 711

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/696 (48%), Positives = 472/696 (67%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL  +
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVAA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  + 
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 696


>gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
           Short=PNPase
 gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
          Length = 709

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/705 (47%), Positives = 480/705 (68%), Gaps = 8/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE +++  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL VS
Sbjct: 121 NPQINPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  AVLMVE EA+ L+E+ +L A++FGH++ + VI+ I+ LA    KE      +  + 
Sbjct: 181 GTAGAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALAAEAGKEKWDWVPEPVNQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + ++++ +  L  +  I EK  R  Q+D +K ++ +    +  +  E EI  +   +
Sbjct: 241 ALHDRVAELAESRLGDAYRITEKQERYAQVDAIKDEVTAALLEQDETLEEAEIHEILGSL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ITTPRDDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAISRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK------VVDQNTGKP 697
           K +D ++ G    VK+L+ D +G+++LS+K       V++    P
Sbjct: 661 KVADYLQVGQETSVKVLEIDRQGRVRLSIKEATAGTAVEEAPPAP 705


>gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
 gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
          Length = 712

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/700 (48%), Positives = 474/700 (67%), Gaps = 2/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GTQ+AVLMVE EA+ L+ED +L A++FGH++ + VIE I+ L     K            
Sbjct: 181 GTQNAVLMVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPAND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  +  +  I +K  R  Q+  +K + ++   +E  + ++ EI  +   +
Sbjct: 241 PLIARVAALAEARISDAYRITDKQERYAQVGVIKDETIAALLAEDETLDDAEIGDIVHSL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVRT +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQSLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGLKAKEAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K +D ++ G  V VK+L+ D +G+++LS+K   +   + I
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQKPQAI 700


>gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|187611341|sp|A1JIX3|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica]
 gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           W22703]
          Length = 706

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/691 (48%), Positives = 468/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LSMK 
Sbjct: 661 KVTDYLQMGQEVPVKVIEVDRQGRIRLSMKE 691


>gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens TA208]
 gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           LL3]
          Length = 707

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/691 (46%), Positives = 461/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PFEGP+ G  V  I+GQ+++NP +D+ ++  ++L V+GT
Sbjct: 123 NCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I+  +  ++L
Sbjct: 183 KDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            E++  + + DL  +  + EK+ R   I+ +K  +V+ F  E    +   ++      + 
Sbjct: 243 SEKVKSLAEPDLLSAIQVHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   L
Sbjct: 483 QGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            ESR +L ++ P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 GESRKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 ESSNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
          Length = 705

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/691 (46%), Positives = 461/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PFEGP+ G  V  I+GQ+++NP +D+ ++  ++L V+GT
Sbjct: 123 NCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I+  +  ++L
Sbjct: 183 KDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            E++  + + DL  +  + EK+ R   I+ +K  +V+ F  E    +   ++      + 
Sbjct: 243 SEKVKSLAEPDLLSAIQVHEKHAREDAINKVKDAVVAKFEEEEHDEDTIKKVKQTLSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   L
Sbjct: 483 QGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            ESR +L ++ P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 GESRKELSQYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 ESSNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC
           51908]
 gi|226702688|sp|B1KRQ5|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 702

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/690 (50%), Positives = 475/690 (68%), Gaps = 2/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ++ AVLA+ G+T VL TVV  ++   G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+ENE LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E +P V+SM+  SAAL +S LPF GP+  A+V Y NG+YVLNP + +  +  LDL V+G
Sbjct: 121 PEINPDVISMIGTSAALSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           TQ AVLMVE EA  L E+V+L  +++GH++ + VI AI++L     K      +  + + 
Sbjct: 181 TQGAVLMVESEAASLPEEVMLGGVVYGHDQQQVVINAINELTAEAGKTKWDWTAPAEDTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L E++  + + +L  +  I +K+ R   +  LK   V+    E++  +  E+  +   ++
Sbjct: 241 LVEKIKGLAEAELTNAYQIADKHERRDAVIALKNAAVAKLVEENADVDLREVDKLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR+ ++    R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRSRIISGSPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VDS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKVDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R  + +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIAS++
Sbjct: 541 SGHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA 
Sbjct: 601 GEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            SD ++ G  V VK+++ D +G+++LSMK 
Sbjct: 661 VSDYLQVGQEVKVKVMEVDRQGRVRLSMKE 690


>gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
          Length = 713

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/697 (48%), Positives = 485/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V Y+N QYVLNP  ++ +   LDL V+
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKTSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 181 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-----VSYFSSEHSSWNEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++          +  ++   + ++  + +
Sbjct: 241 ALIARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEAALAAGTVAADKATVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 541 KMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 601 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V VK++  D++G+++LS K +
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 697


>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
 gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
          Length = 773

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/700 (52%), Positives = 493/700 (70%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+   V IEW G+ L LETG++ARQ+DGAV+AT GETVVL  V   +++K+GQDFFPLT
Sbjct: 1   MFNTKKVAIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKNVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  + G+IPGG+ +RE   TE E LISR+IDR IRPLF + + NE   I  V+ +
Sbjct: 61  VHYQEKFSSAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNEINCIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +++M+AASAAL +SG+PF GP+  A+V Y NG+Y LNP   E  +G LDL V+
Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T DAV+MVE EA +LSE+V+L A++F H     VIEAI  LA+  AK+P  ++  D  K
Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASGQVIEAIIDLAEQAAKDPWELNVGDDQK 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++ E+ +++ +D+  +  + +K  R   + + + K  +  +             + + +
Sbjct: 241 AVKAELKKLVGKDITAAYKLTDKQARQTALGEARAKAKAAMADRTPQEQLAAAK-LVKKL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VRT +L    R+DGR +  +R I ++V  L R HGS+LF RG+TQ I   TLGT++
Sbjct: 300 EAEIVRTAILKDGRRIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKD 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D L+G     FM+HYNF P + GEV R GAP RREIGHG+LA RA+HPVLP   +
Sbjct: 360 AEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+ S+ITES+GSSSMATVCG SL+LMDAGVP+ +PV+GIAMGL+ +G D+ ILSD
Sbjct: 420 FPYTIRVTSDITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAILSD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GIT MQMD+KI GI++ I   AL QAK GR HIL EM+K 
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALAQAKDGRAHILGEMNKA 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L E+R +L    PR+E M I   +IR+VIG GGKVIR IV  TGAKV+IDD+G +KI+SS
Sbjct: 540 LGETRTELSAHAPRIETMTIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKISSS 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+IEAA   I+ I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV 
Sbjct: 600 DSAQIEAAMNWIKGIVEEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K SDV+ EG  V VK+L+ D RGK++LSM+VVDQ TG  +
Sbjct: 660 KVSDVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAEL 699


>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 705

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 464/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ G  V  I+ Q+++NP +D+ ++  ++L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+ +L+AI+FGH E K +I    ++     KE   I   +   +L
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIALYEIDEEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQ 299
            +++  + +EDL  +  + EK+ R   I+++K  +V+ F   EH      ++  +   + 
Sbjct: 243 SDKVKALAEEDLLKAIQVHEKHAREDAINEVKNTVVAKFEDEEHDEDTIKQVKQILSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGTD G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   L
Sbjct: 483 QGMEDALGDMDFKVAGTDKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR +L ++ P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S+ 
Sbjct: 543 SESRKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 ESSNQKAQKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
 gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
          Length = 710

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/707 (52%), Positives = 496/707 (70%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +EW    L LETG++ARQ+DG+V+AT GET V+A V + ++ K GQDFFPLT
Sbjct: 1   MFNEVKKSMEWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKAQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GKIPGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  +I  V+ H
Sbjct: 61  VHYGEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLLICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+  A+V +  G+YVLNP +D+           
Sbjct: 121 DLVNDPDIVAMIAASAALTISGAPFMGPIAAARVGFTEGEYVLNPSIDDMHKLRDNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE  +L A+ F H+  +PVI+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEAEMLGAVRFAHDSFQPVIDLIIDLAEDCAKEPFAYA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             DFS+L   ++   ++D+R +  + +K  R   +   +  + +  + E     +  + S
Sbjct: 241 PADFSELSTAVAAAGEKDMRAAFALTDKQERTSAVSAARDVIKAALTDEQLE--DANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGRD+ T+R I ++ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLEAGILRGDVVKTGKRIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L GT +++FM+HYNF P + GEV R G   RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALHGTYKSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ + D  
Sbjct: 419 PAATDFPYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLILEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMEKALAQAKDGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKALSGA-GDFSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   IY G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASPNGDSIKKAYDMIHSIVAEPEEGVIYDGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              R+   SDV+KEG  V VKLL FDDRGK++L+MK+VDQ TG  IV
Sbjct: 658 ENRRLNHPSDVLKEGQDVKVKLLGFDDRGKVRLAMKMVDQETGLEIV 704


>gi|114769588|ref|ZP_01447198.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114549293|gb|EAU52175.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HTCC2255]
 gi|297183954|gb|ADI20075.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
 gi|297184260|gb|ADI20378.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L27A02]
          Length = 709

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/706 (52%), Positives = 500/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     I+W    L LETG+IARQ+D  V+ATYGET VLA V + +  K+GQ FFPLT
Sbjct: 1   MFNEVKKSIKWGEETLTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E Q+ + V+ H
Sbjct: 61  VNYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           DL + P +V+M+AASAAL LSG PF GP+   +V +  GQYVLNP  D+           
Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L AI F H + +PVI+ I  +A+  A EP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAINFAHEQIQPVIDMIIDMAEDAANEPFDYQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           S D+S+L   +    ++ +R +  + +K  R   +   K  ++   S E    ++    +
Sbjct: 241 SPDYSELYSAVKASGEDSIRSAYALTDKQERTSAVAAAKDLIIDALSEEQ--VSDANFGT 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++++VVR  ++    R+DGRD  TVR I ++  +L RTHGS+LF RG+TQA+ V T
Sbjct: 299 CLKKLESEVVRGDIVKTGKRIDGRDLSTVRPIVSETAVLPRTHGSALFTRGETQALAVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+LSGT R++F++HYNF P + GE  RM  P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDALSGTYRSNFLLHYNFPPYSVGECGRMMGPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P   +FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D  +
Sbjct: 419 PPVTEFPYTIRMVSEITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSGE 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI GDEDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  A++QAK GRLHIL
Sbjct: 479 YAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKAMEQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+  L+E+     E  PR+E + I P++IR VIG GGKVIR I E +GAKVNIDD+G 
Sbjct: 539 GEMANALTEA-GSFSEHAPRIETIKINPEKIREVIGSGGKVIREICEVSGAKVNIDDEGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASS+  +IE A+EMI  I   PEV  +Y G VVKVMDFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASSNGEQIEKAKEMIMEIAAEPEVGVVYTGTVVKVMDFGAFVNFFGKRDGLVHVSQM 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + ERV   SD+VKEG  V VKL+ FDDRGK++LSMKV+DQ TG+ I
Sbjct: 658 ANERVNHPSDLVKEGQKVKVKLMGFDDRGKVRLSMKVIDQETGEEI 703


>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
           568]
 gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
           568]
          Length = 705

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/700 (48%), Positives = 470/700 (67%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    L +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTLTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  + SLDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      +   ++
Sbjct: 181 GTAGAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKAKWDWQAPAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +V    ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAEGRLGDAYHITEKQERYAQVDAIKSSVVETLLAQDETLDVSEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P+   
Sbjct: 361 DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + +F PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
           K +D ++ G  V VK+L+ D +G+++LS+K       G P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSP 700


>gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
 gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
          Length = 702

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/699 (52%), Positives = 499/699 (71%), Gaps = 11/699 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG+V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGT 181
           V+M+AASAAL LSG PF GP+  A+V +  G+YVLNP +D+        +  LDL V+GT
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +DAV+MVE EA +LSE  +L A+ F H+  +PVI+ I  LA+  A EP    + D+S+L 
Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVIDLIISLAEEAANEPFEFAAPDYSELF 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E +      ++R +  I +K  R   +   ++ + +  S E    ++  + S  + ++A 
Sbjct: 241 EAVKAAGDTEMRAAFAISDKQERTAAVAAARETIKAALSEEQ--LDDANLGSAMKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGR ++ +RDI ++ G+L RTHGS+LF RG+TQ +VV TLGT +DEQ
Sbjct: 299 ILRGDVVKTGKRIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  + ILSDI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GR+HIL EM+K LS
Sbjct: 479 GDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMNKALS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +  +     PR+E M +P D+IR VIG GGKVIR IVE +GAKV+I+D+G +KIAS + 
Sbjct: 539 GA-AEFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKIASPNG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI SI   PE  KIY G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 DSIKKAYDMIYSIVAEPEEGKIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           SDV+KEG  V VKLL FDDRGK++LSMK++DQ TG+ + 
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKMIDQETGEEMA 696


>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase;
           AltName: Full=Vegetative protein 15; Short=VEG15
 gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
 gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1589234|prf||2210369A polynucleotide phosphorylase
          Length = 705

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 462/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PFEGP+ G  V  I+ Q+++NP +D+ ++  ++L V+GT
Sbjct: 123 NCSSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I   +   +L
Sbjct: 183 KDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQ 299
            E++  + +EDL  +  + EK+ R   I+++K  +V+ F   EH      ++  +   + 
Sbjct: 243 NEKVKALAEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   L
Sbjct: 483 QGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S+ 
Sbjct: 543 SESRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 ESGNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 706

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/698 (49%), Positives = 485/698 (69%), Gaps = 2/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+A+  +T V  +VV  +   +GQDFFPLTV
Sbjct: 1   MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
              SP +++M+  SAAL +SG+PF GP+  A+V +IN Q+VLNP  ++ ++  LDL V+G
Sbjct: 121 PNVSPDIITMIGTSAALAISGIPFNGPIGAARVGFINDQFVLNPSNVELEESRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T+DAVLMVE EA++LSE+ +L A++FGH++ + VI AI++ A   A      I  ++ + 
Sbjct: 181 TKDAVLMVESEADRLSEEQMLQAVVFGHDQQQTVINAINEFAAEVATPAWDWIAPEENTV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++ +  L  +  I EK  R  +I ++  ++     SE    N  E+ ++F D++
Sbjct: 241 LKNKIAELAEAKLVEAYQITEKMARYDRIHEIADEVNEVLLSEDLEVNTKEVHTIFHDLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D
Sbjct: 301 KTVVRRSIIAGNPRIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +F
Sbjct: 361 AQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R+HIL+ M   +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARMHILSVMDNAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 541 NAPRDDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ+S ERV K
Sbjct: 601 GLQAKEAIRRIEEITADVEVGRIYTGKVTRIVDFGAFVSVIGTKEGLVHISQISQERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            SD +KEG  V VK+L+ D +G+I+LSMK   Q   +P
Sbjct: 661 VSDYLKEGQEVPVKVLEIDRQGRIRLSMKEAVQPAEQP 698


>gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp.
           SIP3-4]
 gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
 gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4]
 gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
          Length = 707

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/689 (50%), Positives = 481/689 (69%), Gaps = 3/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               I +    L LETG IARQ+DGAV+ +YG+TVVL TVV    +K GQDFFPLTV+YQ
Sbjct: 4   IKKTITYGQHELTLETGEIARQADGAVMVSYGDTVVLVTVVGKTDVKPGQDFFPLTVDYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ERTYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE Q++  VM  D E 
Sbjct: 64  ERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQIVATVMSSDSEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
              + +++ ASAAL +SG+PF GP+  A+V YING+YVLNP   + +   LDL V+ T  
Sbjct: 124 DSDIPAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTATQLKDTELDLVVAATST 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEE 242
           AVLMVE EA +L EDV+L ++++GH + + VI  I+++A    KEP       + + L E
Sbjct: 184 AVLMVESEAKELPEDVMLGSVVYGHEQMQAVINLINEIAAEVGKEPWDWTPPAENTALIE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDIQAK 301
           +++ +   D+  +  I  K  R  ++D++K +++S   +E +S  E  EI S+  +++AK
Sbjct: 244 KITGIASADINAAYQIKSKGARSSKLDEIKSRVLSELITEATSTEEANEIKSILHNLEAK 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L+ + R+DGR++ TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT  DEQ
Sbjct: 304 VVRGQILNGEPRIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   LP   +F Y
Sbjct: 364 IIDALQGEYTDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAALPSQEEFGY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+   +L+DI G
Sbjct: 424 TIRVVSEITESNGSSSMASVCGGCLALMDAGVPVKTHVAGIAMGLIKEGNRVAVLTDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG++ GITA+QMD+KI GI+  IM  AL QAK GRLHIL  M + + E
Sbjct: 484 DEDHLGDMDFKVAGSEDGITALQMDIKITGITAEIMQAALAQAKEGRLHILGLMKEAMGE 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           +R +L  F PR+  M I P++IR+VIG GG VIR + E+TG  ++I++DGT+KI  +S  
Sbjct: 544 TRQELSAFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCTSAE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A+  I +IT   E+ + Y+G V+K++DFGA V     +DGL+HISQ++ +RV    
Sbjct: 604 AGEEAKRRIEAITAEVEIGQTYEGTVIKLLDFGAIVSLLPGKDGLLHISQIAHQRVNAVG 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           D +KEG  V VK+++ D++G+++LSMK +
Sbjct: 664 DFLKEGQVVKVKVMEADEKGRVRLSMKAL 692


>gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|81512815|sp|Q8Z3I0|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 711

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/696 (48%), Positives = 472/696 (67%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  + 
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY  +V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 696


>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 707

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/703 (46%), Positives = 469/703 (66%), Gaps = 7/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T    +    + LETG IARQ+ GAV+    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKTTQSFRFGDHDVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF   + NE QVII+V+  
Sbjct: 63  VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSA 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P + +M+ ASAAL +SG+PF GP+   +V YI+ ++V+NP  ++ +   LDL V+
Sbjct: 123 DPAVDPDIPAMLGASAALAVSGIPFRGPIGACRVGYIDDKFVVNPTTEQLKTSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GTQ AVLMVE EA+ L E  +LDA++FGH E +  I AI++L     K       +    
Sbjct: 183 GTQRAVLMVESEADILPEKTMLDAVVFGHREMQVAINAINELVAKAGKPAWDWQPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   + ++  + L  +  I  K  R +++ ++   +    +++  +      +  E+  
Sbjct: 243 ALIARIVEIADKGLHEAYAIRSKQPRTEKLREVYALVEQTLAADAEAAGTEAPDANEVNG 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  +++A +VR+ +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+V  T
Sbjct: 303 ILFELEAHLVRSQILAGEPRIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D L   Q + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VL
Sbjct: 363 LGTKQDEQIIDGLCEEQHDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALKAVL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F YTLR+VSEI ES+GSSSMA+VCG  L+++DAGVP+   VAG+AMGL+K+G+ F
Sbjct: 423 PSPEEFQYTLRVVSEICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNRF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI+  IM  AL QA  GR HIL+
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIEGITPEIMQAALAQAHDGRQHILS 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M ++      +L +F PR+    I P++IR+VIG GG VIR + E+TG  +N++DDG V
Sbjct: 543 RMHEMAGGGAKELSDFAPRMISFKINPEKIRDVIGKGGSVIRALTEETGTTINVEDDGMV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+S  +A +  AR  I  IT   E  +IY+G V +++DFGA V     +DGL+HISQ++
Sbjct: 603 TISSPDMARVAEARRRIEEITAEVEAGQIYEGTVTRLLDFGAIVQLLPGKDGLLHISQIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            ERV   SD +KEG  V VK+++ D++G+++LSMK + +  G+
Sbjct: 663 NERVNAVSDYLKEGQKVRVKVIEADEKGRVRLSMKALLREEGE 705


>gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
           43969]
 gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
           43969]
          Length = 706

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/691 (48%), Positives = 469/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +     ++  S N  EI  +  D+
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
 gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
          Length = 710

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/706 (52%), Positives = 498/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      I+W    L LETG++ARQ+DG V+ATYGET V+A V + +  K GQDFFPLT
Sbjct: 1   MFKEVKKSIQWGEETLTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF + +KNE  VI  V+ H
Sbjct: 61  VHYGEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVEGFKNEVLVICTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG PF GP+   +V +  G Y+LNP +D+           
Sbjct: 121 DLVNDPDMVAMIAASAALTISGAPFMGPIAACRVGFEGGDYILNPEMDDMHKLRENPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +LSE+ +L A+ F H + +PVI+ I  LA+  AK P    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELSEEEMLGAVEFAHAQIQPVIDMIVDLAEDAAKAPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + D+S L + +++  ++ +R +  I +K  R   ++D +  + +  S E    ++  + S
Sbjct: 241 APDYSGLSKAVAKAGEKQMRKAFAIGDKQERTTAVNDARDAIKAALSEEQ--LSDENLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR ++ +RDI ++ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 299 ALKKLEASILRGDVVKTGKRIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +DSLSG  +++FM+HYNF P + GEV R G   RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQMIDSLSGMYKSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDD 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ +D   
Sbjct: 419 PAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLIMQDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL QAK GR+HIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPAIMKEALAQAKVGRVHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LS +  +  E  PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G 
Sbjct: 539 GEMNKALSSA-SEFSEHAPRIETMQIPVDKIREVIGSGGKVIREIVEMSGAKVDINDEGI 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS +   I+ A +MI SI   PE   +Y G VVK++DFGAFV+F G +DGLVH+SQ+
Sbjct: 598 IKIASPNGEAIKKAYDMIWSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKKDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMKVVDQ TG+ +
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQVTGEEV 703


>gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
 gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
          Length = 711

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/696 (48%), Positives = 476/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  +E +   LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTPEELKVSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A+++GH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVYGHEQQQIVIQNINELVKEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I
Sbjct: 241 ALNARVAALAESRLSEAYRITDKQERYAQVDVIKSETIDTLVAEDETLDANELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D + G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   Q
Sbjct: 361 DAQIIDEIMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTMEQ 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++    V VK+L+ D +G+I+LS+K   + +
Sbjct: 661 KVTDYLQMNQEVPVKVLEVDRQGRIRLSIKEATEQS 696


>gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70]
 gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70]
          Length = 712

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/694 (45%), Positives = 470/694 (67%), Gaps = 4/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+WAGRPL +E G++A+Q++GAVL  YG+TVVL T    +  K   DFFPLTVN
Sbjct: 4   EKRIFSIDWAGRPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF++ ++NE Q++  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + SP + ++  AS AL +S +PFEGP+ G  V  ++G++V+NP +++ ++  + L V+GT
Sbjct: 123 DCSPEMAALFGASLALTISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + +   +   +L
Sbjct: 183 KDAINMVEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYELDPQL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
           E E+ Q+ +ED++ +  +PEK  R   I+++K  +++ +   E       ++  +   + 
Sbjct: 243 EAEIRQLAEEDIKRAVQVPEKLARDAAIEEVKASVIAKYEEQEADEETLKQVNEILHKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++ ++K+R DGR  + +R +S++VG+L RTHGS LF RG TQ + V TLG   D
Sbjct: 303 KEEVRRLITEEKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D++ IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDNYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL  M + +
Sbjct: 483 QGIEDHLGDMDFKVAGTAKGVTALQMDIKIKGLSREILEEALQQAKKGRMEILEHMMQTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L ++ P++  M I P++IR VIG  GK I  I+++TG K++I+ DGT+ I+S +
Sbjct: 543 REPRKELSKYAPKILTMQINPEKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + A+++I  I    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV +
Sbjct: 603 EAMNQKAKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGR 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             DVV  GD + VK+++ D +G++ LS K V ++
Sbjct: 663 VEDVVSIGDEILVKVMEIDKQGRVNLSRKAVLRD 696


>gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
           43970]
 gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
           43970]
          Length = 706

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/691 (48%), Positives = 469/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +     ++  S N  EI  +  D+
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLNASEIQDILGDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
 gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
          Length = 715

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/697 (49%), Positives = 483/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG IARQ+ GAVL +  +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKVSKSFQYGQHTVVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E EIL SR+IDR +RPLF + + NE QVI++ +  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQYVLNP   + Q S ++L V+
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYVLNPTSSQIQASQMNLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSE+V+L  ++FGH++ +  I AI  L     K          ++
Sbjct: 181 GTEAAVLMVESEAQNLSEEVMLGGVMFGHDQMQAAINAIHDLVAEAGKPEWDWQPAPANE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-----HSSWNEGEIVS 293
                     +E L+ +  + EK  R  ++ ++  ++ +  +         + +  E+ +
Sbjct: 241 ALAIAVASAAQEGLQAAYLVREKQARTTKLREVYAEVKAKLAEHATAKCEDAPDNVEVEN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR  +L+ + R+DGRD+ TVR IS  +G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 MLFDLEAKIVRGQILNGEPRIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +DS+ G  R+ FM+HYNF P ATGE  R G+P RREIGHGRLA+RA+   L
Sbjct: 361 LGTKQDEQIIDSIMGEHRDRFMLHYNFPPFATGETGRFGSPKRREIGHGRLAKRALVSSL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+   F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+KDG  F
Sbjct: 421 PEAQDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL QAK GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTVTGITALQMDIKIQGITREIMQVALAQAKEGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L EF PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMKEALDGSRTELSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDIGDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+S+ L +   A   I+ +T   EV + Y+G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 TISSADLDKAREAERRIKELTADVEVGQEYEGPVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G TV +K+++ DD+G+++LSMK +
Sbjct: 661 NYRIANINDVLKVGQTVRIKVIEADDKGRLRLSMKAI 697


>gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii
           Ech703]
 gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703]
          Length = 722

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/689 (49%), Positives = 472/689 (68%), Gaps = 2/689 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  + +K GQDFFPLTVN
Sbjct: 19  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHVKPGQDFFPLTVN 78

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPGG+ RRE RP+E E LISR+IDR IRPLF   + NE QVI  V+  + 
Sbjct: 79  YQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFFNEVQVIATVVSVNP 138

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + SP +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GT
Sbjct: 139 QISPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGT 198

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AVLMVE EA+ L+ED +L A++FGH + + VIE I  L     K        + + +L
Sbjct: 199 EGAVLMVESEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAEAGKSKWDWQPPEVNVEL 258

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +  +  + +  L  +  I EK  R  Q+D +K  +V+   +E  + ++ EI  +   I+ 
Sbjct: 259 QNRVKVLSEARLGDAYRITEKQERYAQVDAIKSDVVTGLLAEDDTLDDNEIRDILGSIEK 318

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 319 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDA 378

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FP
Sbjct: 379 QIIDELMGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEAFP 438

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD +++LSDI 
Sbjct: 439 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDSYVVLSDIL 498

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S
Sbjct: 499 GDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 558

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIASS  
Sbjct: 559 TPRGEISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIASSDG 618

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            +   A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +R+ K 
Sbjct: 619 DKAREAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRIEKV 678

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 679 ADYLQLGQEVPVKVLEVDRQGRVRLSIKE 707


>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
 gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
          Length = 715

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/700 (48%), Positives = 487/700 (69%), Gaps = 7/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E +W    ++LETG IARQ+ GAV+    +TV+LATVV  ++ K GQDFFPLT
Sbjct: 3   MFSKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + +    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   +  + +LDL V+
Sbjct: 123 NPDVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K          ++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   ++++ + +L  +  I +K  R  ++ ++   + +    + ++      ++  + +
Sbjct: 243 PLIARVTELAQAELLAAYQIRDKQARSSKLKEVYAAVSAKLEEDAAASGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ER+   +D +K+G  V VK++  D++G+++LS K +  +
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLND 702


>gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus
           degradans 2-40]
 gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans
           2-40]
          Length = 722

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/698 (48%), Positives = 483/698 (69%), Gaps = 3/698 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETGRIARQ+ GAVLA+ G+T VL  V   +  K GQDFFPL+V+
Sbjct: 14  NPVIKKFQYGNDTVTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPGQDFFPLSVH 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ YA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  V+  + 
Sbjct: 74  YQEKAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFLNEVQVVCTVISAEK 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFVSG 180
           +  P +V+M+  SAAL +SG+PF GP+  A+V Y     Y+LNP     +   LD+ V+G
Sbjct: 134 DVDPDIVAMIGTSAALAISGIPFNGPIGAARVGYTQESGYLLNPTYSTLKTSELDMVVAG 193

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T DAVLMVE EA +L ED++L A+++ H E + V++A+++LAK  AK       ++  ++
Sbjct: 194 TADAVLMVESEAKELPEDIMLGAVLYAHQEMQAVVQAVAELAKDAAKPVWDWKPEEVNAE 253

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++     + + V+  I +K  R  ++ +L+ + V+  ++E S  +  E+  +F  I+
Sbjct: 254 LKAKVEHGFADSVGVAYRITDKQKRYDRLSELRNQAVAELATEESGVSADEVKGLFAKIE 313

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR+ ++  + R+DGRDS+TVR +  +VG+L + HGS+LF RG+TQA+VV TLG+  D
Sbjct: 314 KQIVRSRVVAGEPRIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARD 373

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+L G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR I  VLP+   F
Sbjct: 374 AQIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGIGAVLPKEEDF 433

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+ + F +L+DI
Sbjct: 434 PYTMRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTDI 493

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RLHIL EM++V+
Sbjct: 494 LGDEDHLGDMDFKVAGTADGVTALQMDIKIEGITEEIMEIALGQAMDARLHILAEMNRVI 553

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L E  P+   M I PD+IR++IG GG  IR I E+TGA ++IDD+GT+KI +  
Sbjct: 554 ASPRKELSENAPQFHTMKIDPDKIRDIIGKGGATIRSITEETGASIDIDDNGTIKIYADD 613

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++AA   I  IT   E+  +Y+G+VV+++DFGAFV+F   +DGLVHISQ++ ERV  
Sbjct: 614 GDGMQAAIARIEEITAEAEIGAVYQGKVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQN 673

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            SD +KEG  + VK +D D RG+IKLS+K +       
Sbjct: 674 VSDYLKEGQDIEVKCMDIDQRGRIKLSIKELLPAPEAE 711


>gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
 gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
          Length = 706

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/691 (48%), Positives = 465/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K       +  ++
Sbjct: 181 GTAAAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   + ++    L  +  I EK  R  Q+D +K  ++    ++  + +  EI  +   +
Sbjct: 241 VLYARVKELASARLGDAYRITEKQERYTQVDAIKANVIEALLAQDETLDTSEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSD
Sbjct: 421 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|253991498|ref|YP_003042854.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8)
           (polynucleotid phosphorylase) (pnpase) (cap87k)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
           asymbiotica]
          Length = 708

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/691 (48%), Positives = 478/691 (69%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLT
Sbjct: 1   MLSPIVRKFQYGQHTIAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G++PG + RRE RP E E L++R+IDR +RPLF + + NE Q++  V+  
Sbjct: 61  VNYQERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL VS
Sbjct: 121 NPQVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  AVLMVE EA+ L+E+ +L A++FGH++ + VI+ I+ L     KE      +  + 
Sbjct: 181 GTAGAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALVAEAGKEKWDWAPEPINQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L + ++ + +  L  +  I EK  R  Q+D +K ++++    +  + +E EI  +  ++
Sbjct: 241 ELHDRVAALAESRLGDAYRITEKQERYAQVDVIKDEVIAALLEQDEALDEAEIHEILGNL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQIIDELMGERTDRFLLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPKANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G++A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGVSALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INCPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKHAISRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 661 KVADYLQVGQEVSVKVLEVDRQGRVRLSIKE 691


>gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
 gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
          Length = 711

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/706 (48%), Positives = 488/706 (69%), Gaps = 9/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFKWGQHTVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   +  + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAAKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-----VSYFSSEHSSWNEGEIVS 293
            L   + ++ + DL  +  I +K  R  ++ ++             ++   + ++  + +
Sbjct: 243 ALIARVGELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTVAADKASVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A+  I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            ER+   +D +K+G  V VK++  D++G+++LS K +  D   G+P
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAPQGEP 708


>gi|8928245|sp|O34275|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 706

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/691 (48%), Positives = 468/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  ++I+ DGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LSMK 
Sbjct: 661 KVTDYLQMGQEVPVKVIEVDRQGRIRLSMKE 691


>gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 721

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/694 (48%), Positives = 473/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 13  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 73  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 133 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  +  L
Sbjct: 193 EAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDAL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + +   ++E  + +  E+  +   I+ 
Sbjct: 253 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLTAEDDTLDANELGEILHAIEK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 313 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 373 QVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 433 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 493 GDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 553 APRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 613 EKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+++LS+K   + T
Sbjct: 673 TDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQT 706


>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           phytofirmans PsJN]
 gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
           phytofirmans PsJN]
          Length = 718

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/697 (48%), Positives = 485/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   +  + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+V+L  ++FGH + +  I+AI  L +   K          ++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++          + ++      ++  + +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEVYAATSKKLEEDAAAGGTVAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL+
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILS 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +   L ++ PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ER+   +D +K+G  V VK++  D++G+++LS K +
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKAL 699


>gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis
           Et1/99]
 gi|226702651|sp|B2VGN7|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 710

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/696 (48%), Positives = 469/696 (67%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLNPIVQKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH++ + VI+ I+ L     K       +  ++
Sbjct: 181 GTKGAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + +  EI  +   +
Sbjct: 241 ALRSRITALAESRLSDAYRITEKQERYAQVDVIKSETSAALLAEDEALDAAEISDLLHAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDENNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++ G  V VK+L+ D +G+++LS+K   +  
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEAGEQA 696


>gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica
           PV-4]
 gi|187611300|sp|A3QGU0|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4]
          Length = 700

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/695 (49%), Positives = 477/695 (68%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  ++ + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            E SP V+SM+  SAAL +SG+PF GP+  A+V Y++G+Y+LNP + + + S L+L V+G
Sbjct: 121 PEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T++AVLMVE EA+ L E+V+L A+++GH + + VI+AI +L     K      +     +
Sbjct: 181 TENAVLMVESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I  K  R  Q+D +K        +E+   +  EI  +   ++
Sbjct: 241 LVAKVKDLAEAGLTEAYQIVVKQDRYAQVDVVKTAAKEALLAENPDADAREIDGLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR+ ++    R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G Q + FM+HYNF P + GE   +G+P RREIGHG+LA R IH V+P   +F
Sbjct: 361 AQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R ++ +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIAS++
Sbjct: 541 SGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I+ IT   EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA 
Sbjct: 601 GDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            SD ++ G  V VK+++ D +G+++LSMK      
Sbjct: 661 VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKE 695


>gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 721

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/694 (48%), Positives = 472/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 13  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 73  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 133 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  +  L
Sbjct: 193 EAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDAL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+ 
Sbjct: 253 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 313 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 373 QVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 433 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 493 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 553 APRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 613 EKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 673 TDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 706


>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
           JLW8]
 gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
          Length = 709

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/693 (49%), Positives = 485/693 (69%), Gaps = 3/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  I++    L LETG I+RQ+D AV+ +YG+TVVL  V   R +K GQDFFPLT
Sbjct: 1   MFNKFTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+  V+  
Sbjct: 61  VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +++ ASAA+ LSG+P+ GP+  A+V YIN +YVLNP   + ++  LDL V+
Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPYYGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T+ AV+MVE EA +LSE+V+L A+++GH + + VI+ IS+LA    K+     + +  +
Sbjct: 181 ATESAVMMVESEAKELSEEVMLGAVVYGHEQMQAVIKMISELAAEAGKDAWDWVAPEPDT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFED 297
            L E+++ +   D+  +  I  K  R  +++++  ++++   +E +S  E  +I +   +
Sbjct: 241 ALIEKVASLAAADINAAFQIKAKGARSAKLEEITSRVLAELITEETSTTEANKIKNEIFN 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   LP   
Sbjct: 361 RDEQIIDALQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAALPAKE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+   +L+
Sbjct: 421 DFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRVAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM +AL QAK GR HIL  M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITAQIMQVALAQAKEGRAHILGIMKQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +  ++ +F PR+  M I P++IR+VIG GG VIR + E+TG  ++I+DDGTVKIA 
Sbjct: 541 AVSGANTEMSQFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEDDGTVKIAC 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  +   A+  I  IT   EV + Y+G V+K++DFGA V     +DGL+HISQ++ +RV
Sbjct: 601 TSSEQGAEAQRRIAEITAEVEVGQTYEGTVIKLLDFGAIVTLIPGKDGLLHISQIAHQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              +D +KEGD V VK+++ D++G+++LSMK +
Sbjct: 661 NAVADFLKEGDVVKVKVVEADEKGRVRLSMKAL 693


>gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius
           str. 'morsitans']
 gi|123725447|sp|Q2NW19|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius
           str. 'morsitans']
          Length = 705

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/701 (48%), Positives = 474/701 (67%), Gaps = 2/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++      LETG +ARQ+  AV+A+  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTFTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP+E E LISR+IDR IRPLF + + NE  VI  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + SP +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP   E     LDL V+
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+AVLMVE EA  LSED +L A+++GH++ + VI+ I++L     K      ++D + 
Sbjct: 181 GTQNAVLMVESEAQLLSEDQMLGAVVYGHDQQQIVIDNINQLVAEAGKPKWQWQAQDVNA 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  ++++ +  L  S  I EK  R   +D +K  +V   + +  + + GEI  +   +
Sbjct: 241 GLQARVAELAESRLGDSYRITEKQERYAAVDAIKADVVEALTGQDETLDVGEIKDILGAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKSVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNASE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITHEIMQVALNQAKGARMHILGVMERA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVK+A++
Sbjct: 541 ISSPRGNISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKVAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +   A   I  IT   EV +IY G+V +++DFGAF    G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKARHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFFAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K +D ++ G  V VK+L+ D +G+++LS+K     +   +V
Sbjct: 661 KVADYLELGQEVPVKVLEVDRQGRVRLSIKEASAPSQDAVV 701


>gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Antiqua]
 gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua]
          Length = 731

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/688 (48%), Positives = 467/688 (67%), Gaps = 2/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNY
Sbjct: 30  PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 89

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + +
Sbjct: 90  QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 149

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT 
Sbjct: 150 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 209

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L 
Sbjct: 210 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALH 269

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  
Sbjct: 270 ARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKN 329

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 330 VVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQ 389

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 390 NIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPY 449

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 450 TIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 509

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 510 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 569

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   
Sbjct: 570 PRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGD 629

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 630 KAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 689

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 690 DYLQMGQDVPVKVMEVDRQGRIRLSIKE 717


>gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis KIM 10]
 gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM 10]
 gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 737

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/688 (48%), Positives = 467/688 (67%), Gaps = 2/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNY
Sbjct: 36  PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 95

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + +
Sbjct: 96  QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 155

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT 
Sbjct: 156 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 215

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L 
Sbjct: 216 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALH 275

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  
Sbjct: 276 ARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKN 335

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 336 VVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQ 395

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 396 NIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPY 455

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 456 TIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 515

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 516 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 575

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   
Sbjct: 576 PRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGD 635

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 636 KAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 695

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 696 DYLQMGQDVPVKVMEVDRQGRIRLSIKE 723


>gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides F]
 gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           CA88-4125]
 gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola]
 gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis YPIII]
 gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis CO92]
 gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides A]
 gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
 gi|123149978|sp|Q0WBF9|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611335|sp|A4TQU4|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611342|sp|A7FMR8|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611439|sp|Q1C3L8|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704837|sp|A9R5A9|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704838|sp|B1JLX6|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92]
 gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           Pestoides F]
 gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           CA88-4125]
 gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola]
 gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides A]
 gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
 gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
 gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 705

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/691 (48%), Positives = 468/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQDVPVKVMEVDRQGRIRLSIKE 691


>gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
 gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 712

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/706 (52%), Positives = 497/706 (70%), Gaps = 11/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V    ++W    L LETG++ARQ+DG V+AT GET V+A V + R  K GQDFFPLT
Sbjct: 1   MFNVTKKSMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL LSG PF GP+  A+V +  G+YVLNP +D+ Q         
Sbjct: 121 DLVNDPDMVAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDFQ 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             D+S+L   +    +E +R +  I +K  R   +   ++ + +  S E     +  + S
Sbjct: 241 PADYSELFAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQLE--DANLGS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++A ++R  ++    R+DGR +  VR I ++ G+L RTHGS+LF RG+TQA+ V T
Sbjct: 299 ALKKLEAGILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VL
Sbjct: 359 LGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVL 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  
Sbjct: 419 PAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGS 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ILSDI GDEDHLG MDFKVAGTD GIT++QMD+K+ GI+  IM  AL QAK GRLHIL
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K LSE+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 539 GEMAKALSETNA-FSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGV 597

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIAS+    I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 598 IKIASADGTAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQI 657

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              R+   SDV+KEG  V VKLL FDDRGK++LSMK+VDQ TG+ I
Sbjct: 658 ENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 703


>gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           1816]
          Length = 728

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+D+K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|84515054|ref|ZP_01002417.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
           SKA53]
 gi|84511213|gb|EAQ07667.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
           SKA53]
          Length = 713

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/707 (51%), Positives = 501/707 (70%), Gaps = 11/707 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     ++W    L LETG++ARQ+DG+V+AT GET V+A V + +S K GQDFFPLT
Sbjct: 3   MFNEVKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKSQKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L SR+IDR IRPLF   +KNE  V+  V+  
Sbjct: 63  VHYQEKYYAAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVMCTVLSF 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGS 173
           D  + P +++M+AASAAL +SG PF GP+   +V +++G+Y+LNP +D+        +  
Sbjct: 123 DGVNDPDMIAMIAASAALTISGAPFMGPIGACRVGFVDGEYILNPEIDDMHNLRTKPEQR 182

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 183 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHAQIQPVIDLIIDLAEDCAKEPFDFQ 242

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +D+S+L   +    ++ +R +  I +K  R   +   K  +++  + +  +     +  
Sbjct: 243 PEDYSELYATVKSAGEDKMRAAYAITDKQERTGAVSAAKADIIAALTEDQRADTN--LGP 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + +++ V+R  ++    R+DGR  + +R I ++ G+L RTHGS+LF RG+TQ +VV T
Sbjct: 301 ALKKLESAVLRGDVVKHGRRIDGRALDQIRPIVSETGILPRTHGSALFTRGETQGLVVTT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L+G  +++FM+HYNF P + GEV R+  P RREIGHG+LA RA+  VL
Sbjct: 361 LGTGDDEQMIDALTGMYKSNFMLHYNFPPYSVGEVGRVSGPGRREIGHGKLAWRALQAVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-D 472
           P    FPYT+RIVSEITES+GSSSMA+VCG SL++MDAGVP+   VAG+AMGLV + D  
Sbjct: 421 PAPTDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVMEDDGS 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKVAGT++GIT++QMD+KI GI+  IM  AL+QAK GRLHIL
Sbjct: 481 YAVLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMKKALEQAKAGRLHIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EMSK L+ +  +     P++E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG 
Sbjct: 541 GEMSKALTGA-QEFSVHAPKIETMQIPVDKIREVIGSGGKVIREIVETSGAKVDINDDGV 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +K+AS+    I+ A +MI SI   PE  K+YKG VVK++DFGAFV+F G RDGLVH+SQ+
Sbjct: 600 IKLASNDAEAIKRAYDMIYSIVAEPEEGKVYKGTVVKLVDFGAFVNFFGKRDGLVHVSQI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
             +R+   SDV+KEG  VWVKLL FDDRGK++L+MK+VDQ TG+ + 
Sbjct: 660 ENKRLNHPSDVLKEGQDVWVKLLGFDDRGKVRLAMKMVDQATGQELA 706


>gi|152988444|ref|YP_001350781.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PA7]
 gi|187611271|sp|A6VCJ6|PNP_PSEA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150963602|gb|ABR85627.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           PA7]
          Length = 701

 Score =  817 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/693 (49%), Positives = 485/693 (69%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T + ++    + LETGRIARQ+ GAVL T  +  VL TVV  +S  +G+DFFPL+V
Sbjct: 1   MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGS-LDLFVS 179
            +S P + +M+  SAAL +SG+PF GP+  A+V +     Y+LNP  ++ Q S LD+ V+
Sbjct: 121 KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+DAVLMVE EA++L+ED +L A++F H+E + VI A+ +LA    K      +  + +
Sbjct: 181 GTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFED 297
            L   +   + E +  +  I  K  R  ++ +L+ + V+ F+  E   +   E+  VF  
Sbjct: 241 VLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +++ K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG+P RREIGHGRLARR +  +LP   
Sbjct: 361 RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++  R +L E  P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG+VKI  
Sbjct: 541 VIARPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRAICEETKASIDIEDDGSVKIYG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAA++ + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R+
Sbjct: 601 ETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +DV++EG  V V +LD D+RG+IKLS+K V
Sbjct: 661 DKVTDVLQEGQEVKVLVLDVDNRGRIKLSIKDV 693


>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 735

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/697 (49%), Positives = 481/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      ++    ++LETG IARQ+ GAV+    +TVVLATVV  + +K GQDFFPLT
Sbjct: 14  MFNKVVKSFKYGDHNVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 73

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE Q+II+V+  
Sbjct: 74  VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 133

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YIN +YVL P L + + S LDL V+
Sbjct: 134 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 193

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH + + VIEAI +L +   K        +   
Sbjct: 194 GTERAVLMVESEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEEAGKPLWDWAPAERNQ 253

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
           +L   ++Q++   +  +     K  R + +  +   +    ++     E +   E E+ +
Sbjct: 254 QLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGENEVAN 313

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  +++A  VR  +L  + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA+VV T
Sbjct: 314 ILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTT 373

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ VD L+G QR  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VL
Sbjct: 374 LGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALTAVL 433

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEI ES+GSSSMA+VCG  L+L+DAGVP+   VAG+AMGL+K+G+ F
Sbjct: 434 PNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKF 493

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GIS+ IM +AL QAK GR+HIL 
Sbjct: 494 AVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGRMHILG 553

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +   + +L  + PR+    I PD+IR+VIG GG VIR + E+TG ++NI+DDGTV
Sbjct: 554 KMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIEDDGTV 613

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A    AR  +  +    EV K+Y+G+V +++DFGA V     RDGL+HISQ++
Sbjct: 614 TIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLHISQIA 673

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV + SD +KEG TV VK+L+ DD+ +I+LSMK +
Sbjct: 674 HERVNQVSDYLKEGQTVRVKVLEIDDKDRIRLSMKAL 710


>gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
           20601]
 gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
           20601]
          Length = 722

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/701 (43%), Positives = 453/701 (64%), Gaps = 7/701 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLTVN
Sbjct: 4   EKQVFSTEWAGQKLSIEVGQLAKQASGAALVRYGDTVVLTAAVGSKKPRPG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   D 
Sbjct: 63  YEEKMYSVGKVPGGFLKREGRPSDKATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V  I+G+YV+NP  ++ ++  ++L V+GT
Sbjct: 123 DCSPEMAAMLGSSIALCISDIPFDGPIAGVDVGLIDGKYVINPTPEQFEKSDINLTVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
            +A+ MVE  A ++SE+ +L+AI+FGH E K + +   ++ +   KE   I+      +L
Sbjct: 183 YEAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCKFQEEIVQAVGKEKREIELFVSDPEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFED 297
           E E+    +  ++ +    EK  R   I+D+K++++  + +   E  +    E+  + E 
Sbjct: 243 EAEVKAASEAKMKTAIKTEEKKAREAAIEDVKEEILETYKAKELEDEAAVLAEVAHILEM 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+   +R ++   K+R DGR    +R +S++ GLL R HGS LF RG TQA+ + TL   
Sbjct: 303 IEKDEMRRLISQDKIRPDGRKVNEIRPLSSETGLLPRVHGSGLFTRGQTQALSICTLAPL 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P   
Sbjct: 363 REHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+ ES+GSSS A++CGS+LA+MDAGVPI  PVAGIAMGLVK GDD+ IL+
Sbjct: 423 EFPYTIRLVSEVLESNGSSSQASICGSTLAMMDAGVPIKAPVAGIAMGLVKLGDDYTILT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL+QAK GRLHIL  ++ 
Sbjct: 483 DIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILHEALEQAKEGRLHILEHLNA 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++  R  L  + P++  ++I P++I++VIG GGK I  I+++TG K++I+ DGTV +AS
Sbjct: 543 TIAGPRETLSPYAPKIVTLSIKPEKIKDVIGPGGKQINNIIDETGVKIDIEQDGTVYVAS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 + A ++I  I    EV +IY G+V ++  FGAFV      DGLVHIS+L+ ERV
Sbjct: 603 QDEEMNKKAIQIIEDIVREVEVGEIYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGKP 697
            K  D++K GD V VK+++ D +G++ LS K + ++  G+ 
Sbjct: 663 GKVEDILKLGDEVKVKVIEVDHQGRVNLSRKALIEKKEGEE 703


>gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica]
          Length = 711

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/688 (48%), Positives = 467/688 (67%), Gaps = 2/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNY
Sbjct: 9   PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 68

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + +
Sbjct: 69  QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 128

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT 
Sbjct: 129 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 188

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++ L 
Sbjct: 189 GAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNEALH 248

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  
Sbjct: 249 ARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSVEKD 308

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 309 VVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 368

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 369 NIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPY 428

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI G
Sbjct: 429 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILG 488

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 489 DEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 548

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  M I P++I++VIG GG VIR + ++TG  ++I+ DGT+KIA++   
Sbjct: 549 PRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIAATDGD 608

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 609 KAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVT 668

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           D ++ G  V VK+++ D +G+I+LSMK 
Sbjct: 669 DYLQMGQEVPVKVIEVDRQGRIRLSMKE 696


>gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
           33638]
 gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
           33638]
          Length = 706

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/691 (48%), Positives = 466/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA  LSED +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAAAVLMVESEAQILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EVN+IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 721

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/694 (48%), Positives = 471/694 (67%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 13  NPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 73  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 133 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  +  L
Sbjct: 193 EAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDAL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+ 
Sbjct: 253 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 313 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 373 QVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 433 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 493 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 553 APRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY  +V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 613 EKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 673 TDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 706


>gi|15599934|ref|NP_253428.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PAO1]
 gi|107103839|ref|ZP_01367757.1| hypothetical protein PaerPA_01004910 [Pseudomonas aeruginosa PACS2]
 gi|116052887|ref|YP_793204.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893835|ref|YP_002442704.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           LESB58]
 gi|254238523|ref|ZP_04931846.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|254244358|ref|ZP_04937680.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           2192]
 gi|296391567|ref|ZP_06881042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PAb1]
 gi|313109720|ref|ZP_07795660.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           39016]
 gi|81539753|sp|Q9HV59|PNP_PSEAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|122257102|sp|Q02FT2|PNP_PSEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702678|sp|B7V1F2|PNP_PSEA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|9951002|gb|AAG08126.1|AE004888_1 polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           PAO1]
 gi|115588108|gb|ABJ14123.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170454|gb|EAZ55965.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|126197736|gb|EAZ61799.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           2192]
 gi|218774063|emb|CAW29879.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|310882162|gb|EFQ40756.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           39016]
          Length = 701

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 486/693 (70%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T + ++    + LETGRIARQ+ GAVL T  +  VL TVV  +S  +G+DFFPL+V
Sbjct: 1   MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGS-LDLFVS 179
            +S P + +M+  SAAL +SG+PF GP+  A+V +     Y+LNP  ++ Q S LD+ V+
Sbjct: 121 KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+DAVLMVE EA++L+ED +L A++F H+E + VI A+ +LA    K      +  + +
Sbjct: 181 GTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFED 297
            L   +   + E +  +  I  K  R  ++ +L+ + V+ F+  E   +   E+  VF  
Sbjct: 241 VLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +++ K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG+P RREIGHGRLARR +  +LP   
Sbjct: 361 RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+++ R +L E  P +  M I  D+IR+VIG GG  IRGI E+T A ++I+DDG+VKI  
Sbjct: 541 VIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAA+  + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R+
Sbjct: 601 ETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +DV++EG  V V +LD D+RG+IKLS+K V
Sbjct: 661 DKVTDVLQEGQEVKVLVLDVDNRGRIKLSIKDV 693


>gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis
           SB2B]
 gi|187611289|sp|A1S467|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis
           SB2B]
          Length = 699

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/692 (49%), Positives = 473/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+DGAV+A+ G+T VL TVV  +    G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P +VSM+  SAAL +SG+PF GP+  A+V Y+NG+YVLNP   E  GS LDL V+G
Sbjct: 121 PQIEPDIVSMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           TQ AVLMVE EA  L E+V+L A+++GH++ + VI AI++ A    K      +      
Sbjct: 181 TQSAVLMVESEAKSLPEEVMLGAVVYGHDQQQVVINAINEFAAEAGKPRWNWTAPVKNEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +E L  +  I  K  R + + ++KK  ++     +   N  E   +   ++
Sbjct: 241 LVAQIKELAEEGLTAAYQIMAKQERYEAVGEVKKATIAKLQEANPDVNVREAADLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  ++    R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KNVVRGRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             +R  + +F PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIAS++
Sbjct: 541 GSARPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASNN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I  IT   EV ++Y G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GDATREAIRRIEEITSEVEVGRLYTGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLQLNQEVTVKVMEVDRQGRVRLSIKEAQ 692


>gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
 gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
          Length = 778

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/701 (54%), Positives = 513/701 (73%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IE AG+ L LETGRIARQ+D AVLATYGETVVL  V   +S+KDGQDFFPLT
Sbjct: 8   MFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKDGQDFFPLT 67

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+  
Sbjct: 68  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF 127

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ES P +V+M+AASAAL LSG+PF GP+  A+V Y +G+Y LNP L+E  +G LDL V+
Sbjct: 128 DGESEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDLDLVVA 187

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
            T +AV+MVE EA +LSEDV+L A++F H+  K V+ AI  LA+  AK+P  + ++D   
Sbjct: 188 ATGNAVMMVESEAKELSEDVMLGAVMFAHDAAKKVVNAIIDLAEQAAKDPWEMAAQDDLG 247

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-ED 297
            L+++++++I +D+  +  + +K  R   +++ + K  ++F+ E              + 
Sbjct: 248 GLKKKLTKLIGKDIAAAYKLTDKSARSNALNEARAKAKAFFAEEELDAQTVMAGIKLTKK 307

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VRT +L    R+DGR +  +R I A VG L RTHGS+LF RG+TQAI   TLGT+
Sbjct: 308 LEAEIVRTAILKDGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK 367

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L+G    +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 368 DAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD 427

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G D+ ++S
Sbjct: 428 EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAVIS 487

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I  +AL+QAK GR HIL EMSK
Sbjct: 488 DILGDEDHLGDMDFKVAGTENGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK 547

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS +R +L    PR+E + I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+S
Sbjct: 548 ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS 607

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A+IEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 608 SDTAQIEAAKKWILGIVEEAEVGKIYSGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 667

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 668 EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 708


>gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua
           Clip11262]
 gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262]
          Length = 723

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/702 (44%), Positives = 455/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++  + +   E+ +   GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +SE R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701


>gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 698

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/688 (49%), Positives = 471/688 (68%), Gaps = 2/688 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +       +    + LETG IARQ+D AVLA+ G+T VL TVV  ++++ GQDFFPLTV
Sbjct: 1   MNPVIKSFPYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF K + NE QVI  V+  +
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVE 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP VV+M+  SAAL LSG+PF GP+  A+V + +G+Y+LNP ++E + S LDL V+G
Sbjct: 121 PAVSPDVVAMIGTSAALALSGIPFNGPIGCARVGFRDGEYLLNPSVEELKTSKLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T+ AVLMVE EA  LSE+++L A++FGH   + VI+AI++L     K      +      
Sbjct: 181 TESAVLMVESEAEVLSEEIMLGAVMFGHQAQQTVIQAINELKAEAGKPAWDWSAPVKNEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  +++++ +  L  +  I EK  R + ++ +K +  +   +E+   +E E+ ++   ++
Sbjct: 241 LAAKVAELAQAGLGDAYRITEKVARLEAVNAVKAQAKAAILAENPEQDEQELSNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ ++  + R+DGRD++ +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KSVVRSRIIAGEPRIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L G + + FM+HYNF P   GE   +G+P RREIGHG+LA+R +  V+P   +F
Sbjct: 361 GQIIDELIGERTDRFMLHYNFPPFCVGETGFIGSPKRREIGHGKLAKRGVQAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDNFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA   R+HIL  M + L
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITQEIMQIALKQAFEARVHILGVMDEAL 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R +L    PR+  + I PD+IR VIG GG  IR + E+TG  + I+DDGTVK+AS+ 
Sbjct: 541 PAPRAELSMHAPRITTIKIHPDKIREVIGKGGATIRALTEETGTTIEIEDDGTVKVASTD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A   I  IT   E  +IYKG+VV+++DFGAFV+    +DGLVHISQ+  ERV  
Sbjct: 601 GAAAAEAIRRIEEITSDVEEGRIYKGKVVRIVDFGAFVNILPGKDGLVHISQICEERVNN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            SD +  G  V VK+++ D +G+I+LSM
Sbjct: 661 VSDHLTMGQEVDVKVIEVDRQGRIRLSM 688


>gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus
           S110]
 gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           S110]
          Length = 772

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/697 (47%), Positives = 477/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAV+     TV+LATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVTKSFQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+  SAAL +SG+PF GP+  A+V YINGQYVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QLSE+++L  ++FGH +    I AI +L +   K      +  +  
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAEDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               ++  + +E LR    I  K  R + + +    +++        ++ G++  +   I
Sbjct: 243 AFVAKVKSLAEEKLRAVYQIRSKQARTQALREANASVMNTLKESGEPFDAGKVNDLLFAI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQ +VV TLGT  
Sbjct: 303 ESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++ +F PR+  + I P++IR+VIG GG VIRG+ E+TG  +NID+DGT+ IAS+
Sbjct: 543 MGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + E A++ I  IT   E+ K+Y+G V K++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 DPEKAEFAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           K +D + EG  V VK+L+ D++G++KLSMK + +   
Sbjct: 663 KVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERPA 699


>gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
 gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
          Length = 730

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/693 (49%), Positives = 483/693 (69%), Gaps = 7/693 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG +ARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 18  MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 77

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKI GG+ RRE RP+E+E L SR+IDR +RPLFS+ + NE QV+I+V+  
Sbjct: 78  VDYLEKTYSAGKIAGGFFRRECRPSEHETLTSRLIDRPLRPLFSEGFYNEVQVVIHVLSV 137

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+  YVLNP  D+ +  SLDL V+
Sbjct: 138 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 197

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 198 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 257

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++++ + DL  +  + +K  R  ++ ++     +    +  +      ++  + +
Sbjct: 258 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 317

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 318 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 377

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 378 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 437

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 438 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 497

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GRLHIL 
Sbjct: 498 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 557

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 558 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 617

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 618 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 677

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV   +D +KEG  V VK++  D++G+++LS
Sbjct: 678 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 710


>gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
 gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
          Length = 712

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/691 (45%), Positives = 466/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+WAGRPL +E G +A+Q++GAVL  YG+TVVL+T    +  K   DFFPLTVN
Sbjct: 4   EKRVFSIDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLFS+ ++NE Q++  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + SP + +++ +S AL +S +PFEGP+ G  V  ++G++V+NP +++ ++  + L V+GT
Sbjct: 123 DCSPEMAALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+++L+AI+FGH + K +I    ++A    KE + +   +   +L
Sbjct: 183 KDAINMVEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
           E E+ Q+ + D++ +  +PEK  R   I+++K  +++ +   E       ++  +   + 
Sbjct: 243 EAEIRQLAEADIKRAVQVPEKLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEILHKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++ ++K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D
Sbjct: 303 KEEVRRLITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GR+ IL+ M + +
Sbjct: 483 QGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L ++ P++  M I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S +
Sbjct: 543 REPRKELSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  E A+++I  I    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV +
Sbjct: 603 EAMNEKAKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGR 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK+++ D +G++ LS K V
Sbjct: 663 VEDVVSIGDEILVKVMEIDKQGRVNLSRKAV 693


>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
 gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
 gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
 gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
 gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 712

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
          Length = 717

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
 gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
          Length = 712

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens FZB42]
 gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
          Length = 707

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/691 (46%), Positives = 461/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +E G++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ G  V  I+G++V+NP +D+ ++  ++L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I+  +   +L
Sbjct: 183 KDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            E++  + + DL  +  + EK+ R   I+++K  +V+ F  E    +   ++      + 
Sbjct: 243 SEKVKSLAEPDLLSAIQVHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ V TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   L
Sbjct: 483 QGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            ESR +L ++ P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 GESRKELSQYAPKILTMNINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 ESSNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
 gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
          Length = 712

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY]
 gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding
           [Acidovorax ebreus TPSY]
          Length = 727

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/703 (47%), Positives = 483/703 (68%), Gaps = 6/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP     + S LDL V+
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH + K  I AI +L +   K           +
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               +++ + ++ LR +  I  K  R + + +    ++     E   ++  ++ ++  DI
Sbjct: 243 TFIAKVTALAEDKLRAAYQIRSKQARTQALREASASVLESLKGEGVEFDAVKVEALLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   +
Sbjct: 363 DAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSKDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG  IR + ++TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   EV K+Y+G V K++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 EAAKADEAKRRIEEITAEVEVGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
           K  D ++EG  V VK+L+ DD+G++KLSMK +      ++G+P
Sbjct: 663 KVGDYLQEGQVVKVKVLETDDKGRVKLSMKALADRPAGDSGRP 705


>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
          Length = 712

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVNADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
 gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           Nepal516]
          Length = 731

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/688 (47%), Positives = 466/688 (67%), Gaps = 2/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNY
Sbjct: 30  PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 89

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + +
Sbjct: 90  QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 149

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            +P +V+++ ASA L LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+GT 
Sbjct: 150 INPDIVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 209

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++ L 
Sbjct: 210 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALH 269

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   ++  
Sbjct: 270 ARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASVEKN 329

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 330 VVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQ 389

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++FPY
Sbjct: 390 NIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPY 449

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 450 TIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILG 509

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S 
Sbjct: 510 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIST 569

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++   
Sbjct: 570 PRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGD 629

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 630 KAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 689

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 690 DYLQMGQDVPVKVMEVDRQGRIRLSIKE 717


>gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103]
 gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103]
          Length = 757

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 471/699 (67%), Gaps = 2/699 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 51  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVN 110

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 111 YQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNP 170

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE +   LDL V+GT
Sbjct: 171 QVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGT 230

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKL 240
           Q+AVLMVE EA  LSE+ +L A++FGH++ + VIE I+ L     K        +  + L
Sbjct: 231 QNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANTAL 290

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  +  +  I +K  R  Q+  +K + ++   +E  S +  EI  +   ++ 
Sbjct: 291 ISRVAALAETRISDAYRITDKQERYTQVGVIKDETIAALLAEDESLDAAEIGDIVHSLEK 350

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVRT +L+ + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 351 NVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDA 410

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FP
Sbjct: 411 QNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFP 470

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 471 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSDIL 530

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S
Sbjct: 531 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 590

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 591 TPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 650

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 651 LKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 710

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +D ++ G  V VK+++ D +G+++LS+K   +   + + 
Sbjct: 711 TDYLQMGQEVPVKVMEVDRQGRVRLSIKEATETKPEAVA 749


>gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus
           SAFR-032]
 gi|187470936|sp|A8FDD7|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus
           SAFR-032]
          Length = 705

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/691 (45%), Positives = 457/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAVL  YG+T VL++    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ G  V  ++G++++NP +++ +Q  ++L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A+++ E+ +L+AI++GH E K +IE   ++ K   K  I I   +  + L
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQ 299
            +E+  + + DL  +  + EK+ R   I  +KK +V  F  E        +   V   + 
Sbjct: 243 ADEVKALAETDLLKAIQVHEKHAREDAISAVKKAVVEKFEEEDRDEATIKQAKDVLNKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI G+S++I+  ALQQAK+GR+ IL+ M   +
Sbjct: 483 QGMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             SR +L  + P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 PTSRGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTE 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  +    EV ++Y G+V ++  FGAF+     +DGLVHIS+L+ +RV K
Sbjct: 603 EDMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
 gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
          Length = 703

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/695 (45%), Positives = 460/695 (66%), Gaps = 3/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M  +HT   E  GRPL +ETG+IA+Q++G+VL  YGET V+  V    + ++G DFFPLT
Sbjct: 9   MQRMHTFSTELGGRPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ YAVGKIPGG+LRRE RP E  IL SR+IDR IRP+F   Y N+ Q++   +  
Sbjct: 69  VDFEEKMYAVGKIPGGFLRREGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSV 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D +++P + +M+ AS AL +S +PFEGP+ G +V  ++G++++NP L++     +++ V+
Sbjct: 129 DPDNAPDIPAMIGASCALSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSEMNVAVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT++A+LMVE  A ++SE V+LDAI+FGH E K ++    ++     K  +         
Sbjct: 189 GTKEAILMVEAGAKEVSEQVMLDAILFGHEEIKKLVAFQEQIQAEVGKPKMEFTPYVPPE 248

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L +E+ +  +  +  +   P+K  R K + + K+ ++ +F   +   +E +I  + + +
Sbjct: 249 ALSKEIMEYGEPKIHDALMDPDKLHRDKMVSETKEAILEHFVELYPE-SEIDIAHIVQKL 307

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             KV R ++   K+R DGR  + VR IS +VGLL R HG SLF RG TQ +  + L    
Sbjct: 308 VKKVFRHIITHDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLR 367

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D L       ++ HYNF P + GE   + +P RREIGHG LA RA+ PV+P   +
Sbjct: 368 EAQTLDGLGTELTKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEE 427

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMA+ C S+L+LMDAGVPI  PV+G+AMGLVK+GDD  IL+D
Sbjct: 428 FPYTIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGDDITILTD 487

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT+ GITA+QMD+KI GI+  I   AL+QA++GR +IL +M + 
Sbjct: 488 IQGLEDANGDMDFKVAGTEKGITAIQMDIKIDGINRQIFEQALEQARKGRAYILGKMLEC 547

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R  L E  P++  + I PD+I++VIG GGKVI+ I E++GAK++I++DGTV +A++
Sbjct: 548 IPAPRPSLKEHAPKITTLKINPDKIKDVIGPGGKVIKKITEESGAKIDIEEDGTVYVAAA 607

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A    A E I +IT  PE+ KIY G+V ++M+FGAFV F   R+GLVHISQL+ ERV 
Sbjct: 608 DQASANKAIEAINAITAEPEIGKIYTGKVTRLMNFGAFVEFMPGREGLVHISQLAKERVE 667

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  DVV  GD + VKL++ D +G++ LS K   Q+
Sbjct: 668 KVEDVVNVGDEIVVKLVEIDAKGRMNLSRKAALQS 702


>gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J1-175]
 gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           L99]
 gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. Scott A]
          Length = 723

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 454/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++  + +   E+ +   GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
           7061]
 gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
           7061]
          Length = 705

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/691 (45%), Positives = 457/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAVL  YG+T VL++    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ G  V  ++G++++NP +++ +Q  ++L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A+++ E+ +L+AI++GH E K +IE   ++ K   K  I I   +  + L
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQ 299
            +E+  + + DL  +  + EK+ R   I  +KK +V  F  E        +   V   + 
Sbjct: 243 ADEVKALAETDLLKAIQVHEKHAREDAISAVKKAVVEKFEEEDRDEATIKQAKDVLNKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI G+S++I+  ALQQAK+GR+ IL+ M   +
Sbjct: 483 QGMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             SR +L  + P++  M I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 PASRGELSRYAPKILTMKINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTE 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  +    EV ++Y G+V ++  FGAF+     +DGLVHIS+L+ +RV K
Sbjct: 603 EDMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALDRVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis PB1/+]
 gi|81640532|sp|Q66F56|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704836|sp|B2K2Q9|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+]
          Length = 704

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/691 (48%), Positives = 468/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQDVPVKVMEVDRQGRIRLSIKE 691


>gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 722

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/699 (49%), Positives = 474/699 (67%), Gaps = 2/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG IARQS GAVL     TVVLATVV     K GQDFFPLT
Sbjct: 24  IFNKVTKTFQWGQHTVTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLT 83

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE  V+++ +  
Sbjct: 84  VDYLEKSYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSL 143

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP     + S +DL V+
Sbjct: 144 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKDSIMDLVVA 203

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + K  I AI +L +   K      +     
Sbjct: 204 GTEAAVLMVESEAQQLSEEVMLGAVVYGHEQSKTAINAIHELVRDAGKPVWDWKAPARDE 263

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++    K+ L  +  I  K  R +        + +   ++   ++  ++  +  DI
Sbjct: 264 ALIAKVDAHGKDKLVAAYQIRNKQARTQACRAAYADVFAGLKADGVEFDSVKVEGMLFDI 323

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGSSLF RG+TQA+V+ TLGT  
Sbjct: 324 EAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGTER 383

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+LSG   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP   +
Sbjct: 384 DAQRIDALSGEYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTKEE 443

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY+LR+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 444 FPYSLRVVSEITESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEDNRFAVLTD 503

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL EM K 
Sbjct: 504 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARVHILGEMQKS 563

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E+R ++  F PR+    I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IASS
Sbjct: 564 MAEARTEVSNFAPRLFSFKINPEKIRDVIGKGGSVIRALTEETGTQINIEEDGTITIASS 623

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ E A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ ERV 
Sbjct: 624 DPAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHERVE 683

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K +D + EG  V VK+L+ D++G+IKLSMK + +   + 
Sbjct: 684 KVTDYLSEGQIVKVKVLETDEKGRIKLSMKALIERPAQE 722


>gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 712

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/691 (45%), Positives = 466/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+WAGRPL +E G +A+Q++GAVL  YG+TVVL+T    +  K   DFFPLTVN
Sbjct: 4   EKRVFSIDWAGRPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLFS+ ++NE Q++  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + SP + +++ +S AL +S +PFEGP+ G  V  ++G++V+NP +++ ++  + L V+GT
Sbjct: 123 DCSPEMAALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+++L+AI+FGH + K +I    ++A    KE + +   +   +L
Sbjct: 183 KDAINMVEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
           E ++ Q+ + D++ +  +PEK  R   I+++K  +++ +   E       ++  +   + 
Sbjct: 243 EAKIRQLAEADIKRAVQVPEKLARDAAIEEVKAGVIAKYEEQEADEETLKQVNEILHKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++ ++K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D
Sbjct: 303 KEEVRRLITEEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLGIEETKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GR+ IL+ M + +
Sbjct: 483 QGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L ++ P++  M I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S +
Sbjct: 543 REPRKELSKYAPKILTMQINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  E A+++I  I    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV +
Sbjct: 603 EAMNEKAKQIIEDIVREVEVGQIYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERVGR 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK+++ D +G++ LS K V
Sbjct: 663 VEDVVSIGDEILVKVMEIDKQGRVNLSRKAV 693


>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 712

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADVDTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
 gi|187611438|sp|Q1CM51|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
          Length = 705

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/691 (47%), Positives = 467/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASA L LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSD
Sbjct: 421 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQDVPVKVMEVDRQGRIRLSIKE 691


>gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
 gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
          Length = 723

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   IDD+K++++  + +   E+ S    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIDDVKEEILESYKAKELENESEILSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas
           arsenicoxydans]
 gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
          Length = 710

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/697 (50%), Positives = 484/697 (69%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+II+VM  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY+LNP   + + S +DL V+
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH++ K VI+AI  L +   K  +         
Sbjct: 181 GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-----SSWNEGEIVS 293
            L   ++   +E LR +    +K  R  ++ D   ++ +  ++E      ++ +  E+ +
Sbjct: 241 ALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+KDG  F
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHILG 540

Query: 534 EMSKVLS-ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           EM K +   +  +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G 
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS   A  + A+  I  +T   EV K+Y+G V+K++DFGA V     +DGL+HISQ+
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + ERV   +D +KEG  V VK+L+ DDRG++KLSMK 
Sbjct: 661 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKA 697


>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis MSMB43]
          Length = 706

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/691 (48%), Positives = 480/691 (69%), Gaps = 7/691 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            E +W    ++LETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLTV+Y E+
Sbjct: 2   KEFQWGQHKVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  + E   
Sbjct: 62  TYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPA 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            + +++ ASAAL +SGLPF GPV  A+V Y+N +YVLNP   + + S LDL V+GT+ AV
Sbjct: 122 DIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRLDLVVAGTERAV 181

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEEEM 244
           LMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +     L   +
Sbjct: 182 LMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDEALNARV 241

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVSVFEDIQ 299
           +++ + +L  +  I +K  R  ++ ++     +    +  +      ++  + ++  D++
Sbjct: 242 TELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGNILFDLE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           AK+VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT+ D
Sbjct: 302 AKIVRGQILGGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   LP   +F
Sbjct: 362 EQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F +L+DI
Sbjct: 422 GYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL +M + +
Sbjct: 482 LGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAV 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           + +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V IAS++
Sbjct: 542 AGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVVTIASTN 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++  ERV  
Sbjct: 602 SEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIVNERVKD 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +D +KEG  V VK++  D++G+++LS K +
Sbjct: 662 INDYLKEGQQVKVKVIQTDEKGRVRLSAKAL 692


>gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
          Length = 723

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 454/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++  + +   E+ +   GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42]
 gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42]
          Length = 727

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/703 (47%), Positives = 482/703 (68%), Gaps = 6/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP     + S LDL V+
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH + K  I AI +L +   K           +
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               +++ + +  LR +  I  K  R + + +    ++     E   ++  ++ ++  DI
Sbjct: 243 TFIAKVTALAEGKLRAAYQIRSKQARTQALREASASVLESLKGEGVEFDAVKVEALLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   +
Sbjct: 363 DAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSKDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG  IR + ++TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   EV KIY+G V K++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 EAAKADEAKRRIEEITAEVEVGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
           K  D ++EG  V VK+L+ DD+G++KLSMK +      ++G+P
Sbjct: 663 KVGDYLQEGQIVKVKVLETDDKGRVKLSMKALADRPAGDSGRP 705


>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
 gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
          Length = 716

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/688 (48%), Positives = 466/688 (67%), Gaps = 2/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNY
Sbjct: 14  PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 73

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  + +
Sbjct: 74  QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQ 133

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE +  SLDL V+GT 
Sbjct: 134 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKISSLDLVVAGTA 193

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
            AVLMVE EA+ LSED +L A++FGH + + VIE+I+ L     K      +    + L 
Sbjct: 194 GAVLMVESEADVLSEDQMLGAVVFGHQQQQVVIESINSLVAEAGKPKWDWQAPVVNAALH 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++++ +  L  +  I EK  R  Q+D +K  +V     +  + +  EI  +   ++  
Sbjct: 254 ARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLVQDETLDASEIQDILSSVEKN 313

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 314 VVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 373

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  ++P+   FPY
Sbjct: 374 NLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKLEDFPY 433

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI G
Sbjct: 434 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNFVVLSDILG 493

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S 
Sbjct: 494 DEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAISV 553

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I PD+I++VIG GG VIR + E+T   + IDDDGTVKIA++   
Sbjct: 554 PRGDISQFAPRIHTIRISPDKIKDVIGKGGSVIRALTEETDTTIEIDDDGTVKIAATGGE 613

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 614 KAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 673

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 674 DYLQMGQEVPVKVLEVDRQGRVRLSIKE 701


>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           10987]
 gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10987]
          Length = 712

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQSVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           A1055]
          Length = 712

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 712

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Ames]
 gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Sterne]
 gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Bacillus anthracis str. A2012]
 gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
 gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Australia 94]
 gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Ames]
 gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Sterne]
 gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
          Length = 712

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
           ATCC 33641]
 gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
           ATCC 33641]
          Length = 706

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/691 (48%), Positives = 467/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K       +  ++
Sbjct: 181 GTAAAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++ +  L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALHARVAELAEVRLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPSPSE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
 gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
          Length = 707

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/691 (48%), Positives = 465/691 (67%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLT
Sbjct: 1   MLTPIIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSED +L A++FGH + + VIE I+ L     K      ++  ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQIVIENINALVAEAGKPKWDWHAEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++++    L  +  I EK  R  Q+D +K  +     ++  + +  EI  +   +
Sbjct: 241 ALRARVAELATARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDASEIQDILGSV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P  A 
Sbjct: 361 DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNAAD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + EF PR+  M I P++I++VIG GG VIR + ++TG  + I+DDGT+KIA++
Sbjct: 541 ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKE 691


>gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
 gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
          Length = 690

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/689 (45%), Positives = 457/689 (66%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EIE  GR + +E G++A+Q++GA L  YG+TVVL T     + ++G DFFPLTV+Y
Sbjct: 1   MQSFEIELGGRNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF + ++N+ Q++  V+  D +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P + +M+ AS AL +S +PF GP+ G +V YING +V+NP+ +E     L+L V+G+ 
Sbjct: 121 NPPEIAAMLGASCALTVSDIPFMGPIAGVRVGYINGAFVINPKEEERAVSELNLTVAGSY 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DAV+MVE  AN+LSE++VLDAI+FGH E + ++E    +   C KE  +      S+ LE
Sbjct: 181 DAVMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSACGKEKQIPAIFAVSEELE 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++    +E L  +    +K  R   I  +K + + +F  E+      EI  +   I+  
Sbjct: 241 EKIRAYAEERLDAATRNEDKLGRDADIAAIKSETMEHFIVEYPEQ-AKEISQILYKIEKG 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++  +K+R DGR    VR +S +VG+L RTHGS LF RG TQ + V TLG+  DEQ
Sbjct: 300 IVRHMITHEKIRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P    FPY
Sbjct: 360 IIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL+DI G
Sbjct: 420 TIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL QAK GR  IL +M + + +
Sbjct: 480 MEDALGDMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILGKMLECIDK 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              +L  + PRVE + I  D+IR+VIG GGKV+R I+++TG  ++I +DG + I S +  
Sbjct: 540 PAEELSPYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVDIDIHEDGNIFITSPNTE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++ AR+MI  I    EV +IY G+V + + FGAFV     ++GL HISQL+  RV    
Sbjct: 600 AMDRARKMIEDIVRDVEVGEIYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHRVESVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVV  GD + VK+++ D++G+I +S KV+
Sbjct: 660 DVVHIGDELQVKVIEIDEKGRINVSHKVL 688


>gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459]
 gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 723

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+D+K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
 gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
          Length = 707

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/698 (47%), Positives = 482/698 (69%), Gaps = 2/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG +ARQ+ GAV+     TVVLATVV     K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGQHKVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A+SAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH +    I AI +L +   K      +    +
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAKDE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++++    L+ +  I  K  R +        +++   ++  +++   +  +  DI
Sbjct: 243 PLIAKVNELAGAKLQAAYQIRSKQARTQACRVAYADVMAALKADGVAFDGVTVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+LSG   + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++ +F PR+ +M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IAS+
Sbjct: 543 MGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIASN 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 DSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K +D + EG  V VK+L+ D++G++KLSMK +     +
Sbjct: 663 KVTDYLSEGQIVKVKVLETDEKGRVKLSMKALLDRPAQ 700


>gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli
           AAC00-1]
 gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1]
          Length = 758

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/703 (49%), Positives = 490/703 (69%), Gaps = 6/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGDKTVVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSED++L A++FGH + +  I AI +L +   K           +
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDAGKPVWDWQPAAKDE 242

Query: 240 LE-EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               +++Q+ +E LR +  I  K  R + + +    ++    +E + ++  ++ ++  DI
Sbjct: 243 PFIAKVTQLAEEKLRAAYQIRSKQARTQALREASASVLESLKAEGADFDAVKVEALLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + FM HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  RLHIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG VIR + E+TG ++NID+DGT+ IAS+
Sbjct: 543 MGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   E+ KIY+G VVK++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 DSAKADEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
           K +D + EG  V VK+L+ D++G++KLSM+ +      ++G+P
Sbjct: 663 KVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGDSGRP 705


>gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 700

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/698 (44%), Positives = 465/698 (66%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ Q+I  ++  D
Sbjct: 61  EYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +  P +V+M+ +S AL +S +PF GP     V  ++GQ+V+NP  D+ + SL  L VSG
Sbjct: 121 PDVQPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DA++MVE  A ++ E+ +L+AI++ H   K ++E I ++ K        +   +   +
Sbjct: 181 TKDAIVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVKEVGVPKSEVILHEIDKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     + +  +   PEK  R   +D ++++++ YF  E+   N  +I  V  +I 
Sbjct: 241 LEEKVRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEEYPD-NLADIDEVLYNIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D
Sbjct: 300 KEQMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 IQILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI
Sbjct: 420 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A++GRL+IL++M +V+
Sbjct: 480 QGIEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + PRV  M + P++IR++IG  GK I  I+ +TG K++I++DG + I +S 
Sbjct: 540 KEPRKELSIYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVKIDIEEDGRLYITASD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L   E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K
Sbjct: 600 LKSGERAKQMIEAITKDITVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVVK GD + VK+ D D +G+I LS K    +  + 
Sbjct: 660 VEDVVKVGDDILVKVTDIDKQGRISLSRKDALPDEEEE 697


>gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
           DSS12]
 gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
           DSS12]
          Length = 705

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/694 (49%), Positives = 472/694 (68%), Gaps = 2/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVN
Sbjct: 5   NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVN 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D 
Sbjct: 65  YQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           E +P V+SM+  SAAL +SGLPF GP+  A+V YING+Y+LNP + +  +  LDL V+GT
Sbjct: 125 EINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLDLIVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKL 240
           Q AVLMVE EA  L E+++L ++ +GH + + VI+A+++L     K      +    + L
Sbjct: 185 QAAVLMVESEAASLPEEIMLGSVAYGHEQLQVVIDAVTELKAEAGKPAWDWSAPVADADL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            E++  + + D   +  I  K+ R   ++ LK   ++    E++  +  E+  +   ++ 
Sbjct: 245 VEKIRVLAEADFAAAYQITTKHERRDAVNALKSVAIAKLVEENADIDLSEVGKLLASLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  ++  + R+DGR+ + VR ++   G+L RTHGS++F RG+TQA+V  TLGT  D 
Sbjct: 305 KVVRGRIIAGQPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VDS+ G   N FM+HYNF P   GE   +G+P RREIGHG+LA R ++ V+P    FP
Sbjct: 365 QKVDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMNAVMPSAEDFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + + 
Sbjct: 485 GDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIG 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  +    PR+  + I P++IR+VIG GG  IR + E+TG  + +DDDGTVKIASS+ 
Sbjct: 545 THRDDISAHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSNG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A   I  IT   EV  IY G+VV+++DFGAFV     +DGLVHISQ++ ERVA  
Sbjct: 605 EATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           SD ++ G  V VK+++ D +G+++LSMK     T
Sbjct: 665 SDYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKT 698


>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
 gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
          Length = 713

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/697 (49%), Positives = 480/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            +    P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPNVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI+AI++ A   A      +  ++ 
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   ++++ +  L  +  I EK  R  +I  +  ++     +E    N  EI ++F D
Sbjct: 241 TALNNRIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R ++ EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREEISEFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I +IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ ERV
Sbjct: 601 TDGDQAKDAIARIEAITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIAHERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K +D +KEG  V VK+L+ D +G+++LSMK   +  
Sbjct: 661 EKVTDYLKEGQEVQVKVLEIDRQGRVRLSMKEAMEKP 697


>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
 gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
          Length = 722

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/697 (47%), Positives = 479/697 (68%), Gaps = 2/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + +ETG IARQ+  AV+    +T V  T V  + +K+GQDFFPLTVN
Sbjct: 18  NPIVRKFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVN 77

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q+I  V+  + 
Sbjct: 78  YQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNP 137

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V +IN QYVLNP  DE +   LDL V+GT
Sbjct: 138 QVNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLDLVVAGT 197

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AVLMVE EA+ LSE+ +L A++FGH++ + VI+ I++L K   KE      +  +  L
Sbjct: 198 ESAVLMVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQPEPVNQAL 257

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            ++++ + +  +  +  I EK  R +Q+D +K+++ +   +E  + +  E+  +  +++ 
Sbjct: 258 RDKVAALAESRMGDAYRITEKQERYEQVDLIKEEVTAAIVAEDENVDVAEVADILANLEK 317

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +VVR+ ++  + R+DGR+ + VR +  +  +L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 318 QVVRSRVIRGEPRIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDA 377

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G   + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A FP
Sbjct: 378 QVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPDHADFP 437

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 438 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSDIL 497

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++
Sbjct: 498 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAIN 557

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 558 SPRDDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 617

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV ++Y+G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 618 LKAKEAIRRIEEITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 677

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +D ++ G  V VK+L+ D +G+I+LSMK        P
Sbjct: 678 TDYLQMGQEVPVKVLEIDRQGRIRLSMKEAVATEETP 714


>gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
 gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
          Length = 740

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/693 (48%), Positives = 469/693 (67%), Gaps = 2/693 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 32  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVN 91

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 92  YQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNP 151

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           +  P +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GT
Sbjct: 152 QVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVAGT 211

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKL 240
           Q+AVLMVE EA  LSE+ +L A++FGH++ + VIE I+ L     K       +   + L
Sbjct: 212 QNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTPL 271

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  +  +  I +K  R  Q+  +K + ++   +E  + +  EI  +   ++ 
Sbjct: 272 ISRVAALAEARISDAYRITDKQERYAQVGVIKDETIAALLAEDETLDGSEIGDIVHSLEK 331

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVRT +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT  D 
Sbjct: 332 TVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDA 391

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FP
Sbjct: 392 QNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFP 451

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI 
Sbjct: 452 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDIL 511

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK  RLHIL  M + +S
Sbjct: 512 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQAIS 571

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 572 TPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 631

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 632 LKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 691

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +D ++ G  V VK+++ D +G+++LS+K   ++
Sbjct: 692 TDYLQMGQEVPVKVMEVDRQGRVRLSIKEATES 724


>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
 gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
          Length = 711

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/706 (49%), Positives = 488/706 (69%), Gaps = 9/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP  L   + +LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRLQMKESALDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAAKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
            L   +S++ + DL  +  I +K  R  ++ ++     +    E ++          + +
Sbjct: 243 ALITRVSELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTAAADKASVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VRT +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  ++ +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS++   +  A+  I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            ER+   +D +K+G  V VK++  D++G+++LS K +  D   G+P
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAPQGEP 708


>gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 772

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/701 (54%), Positives = 507/701 (72%), Gaps = 4/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV TV +EW G+ L LETGRIARQ+DGAVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR +RPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFV 178
           D E+ P +V+M+AASAAL +SG+PF GP+  A+V +I G+YVLNP+ D     G LDL V
Sbjct: 121 DGETEPDIVAMIAASAALTISGVPFMGPIAAARVGFIEGEYVLNPKQDVALADGRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           + T  AV+MVE EA +LSED +L A++F H+E K VI AI +LA+  AK+P  ID  D  
Sbjct: 181 AATDTAVMMVESEAKELSEDEMLGAVLFAHDEIKKVIGAIIQLAEKAAKDPWDIDLSDNT 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + +++++  ++ +D+  +  + +K  R   +++ + K  +   +E  +  +   +   + 
Sbjct: 241 ADIKKKLKDLVGKDVAAAYKLTDKSARSNALNEARAKAKAA-FAEEGAQTQMVAMKTMKK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A +VR  +L    R+DGR +  VR I A VG L RTHGSSLF RG+TQAI   TLGT+
Sbjct: 300 VEADIVRGAILKDGQRIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTK 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L G +  +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 360 DAEQMIDGLEGLRYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+RI+S+ITES+GSSSMATVCG  L++MDAGVP+ +PV+GIAMGL+ +GD F +LS
Sbjct: 420 EFPYTIRILSDITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  GIT MQMD+K+ GI+  I  +AL+QA  GR HIL EM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L E+R +L    PR+E + I   +IR+VIG GGKVIR IV  TGAKV+IDD+G +KI+S
Sbjct: 540 ALGEARTELSAHAPRIETLQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S L +IEAA+  I  I +  EV KIYKG+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 600 SDLTQIEAAKNWILGIVEEAEVGKIYKGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K +DVVKEG  V+VK+L+ D RGK++LSM+VVDQ TG  +
Sbjct: 660 EKPTDVVKEGQDVYVKVLEIDQRGKVRLSMRVVDQETGAEL 700


>gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira
           halophila SL1]
 gi|187610274|sp|A1WXU7|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila
           SL1]
          Length = 702

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/693 (49%), Positives = 475/693 (68%), Gaps = 3/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 ++    + LETG +ARQ+DGAVL    +TVVL TVV  +     +DF PLTVNY
Sbjct: 10  PVKRSFQFGQHQVTLETGGVARQADGAVLVDMADTVVLVTVVGRKDPAAARDFLPLTVNY 69

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGG+ +RE RP+E E L  R+IDR IRPLF + ++ E QVI  V+  + E
Sbjct: 70  QERTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLNDE 129

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
               + +M+  SAAL LSG+PFEGP+   +V +++G++VLNP   +  +  LDL V+GTQ
Sbjct: 130 VDADIPAMIGTSAALALSGIPFEGPIGACRVGHLDGEFVLNPTFSQTAESDLDLVVAGTQ 189

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DAVLMVE EAN L E  +LDA+++GH + +  I+ I+ LA    K          ++ L+
Sbjct: 190 DAVLMVESEANLLPESTMLDAVLYGHEQMQVAIDTINDLAAEAGKPRWDWQPPAKNESLD 249

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQA 300
             ++++++ DL  +  I +K  R +++  L+ K V   + E    W  G++   F+ ++ 
Sbjct: 250 SAVAELVRSDLEAAYQIADKQERSERVGALRDKAVEALADEEREGWGAGDVGEAFKTLEK 309

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR  +L    R+DGRD++TVR ++ Q G+L RTHGS++F RG+TQAIVV TLGT  D 
Sbjct: 310 KIVRGRILAGHPRIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVSTLGTGRDA 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G +R  FM+HYNF P   GE   +G P RREIGHG+LA+R +  V+P   +FP
Sbjct: 370 QVIDALEGERREPFMLHYNFPPYCVGETGFIGTPKRREIGHGKLAKRGVEAVMPSDEEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSE+TES+GSSSMATVCG+SL+LMDAGVP+   VAGIAMGL+K+GD+F +L+DI 
Sbjct: 430 YVIRVVSEVTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGDEFAVLTDIL 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM  AL QA+ GRLHIL +M++V+ 
Sbjct: 490 GDEDHLGDMDFKVAGSKDGVTALQMDIKIDGITREIMEQALDQARSGRLHILEQMNQVID 549

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R Q+ E+ PR+  M I P++IR+VIG GG  IRG+ E+TG  ++I D+G V IAS+  
Sbjct: 550 KPREQMSEYAPRLLTMRIDPERIRDVIGKGGATIRGLTEETGTNIDISDEGVVTIASADK 609

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  E A++ I  +T   EV K+Y G+V K+MDFGAFV+    RDGLVHISQ+S  RV   
Sbjct: 610 AAAEEAKKRIELLTADVEVGKVYDGKVAKLMDFGAFVNILPGRDGLVHISQISNNRVENV 669

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +D + EGD+V VK+L+ D +G+I+LSMK V++ 
Sbjct: 670 ADELSEGDSVRVKVLEVDRQGRIRLSMKAVEEE 702


>gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           YJ016]
 gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016]
          Length = 725

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 476/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 18  MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPL 77

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + + NE QVI  V+ 
Sbjct: 78  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVS 137

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 138 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVV 197

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A   A      +  +  
Sbjct: 198 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEAN 257

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L E+++ + +  L  +  I EK  R  +I ++  ++ +   +E    +  EI ++F D
Sbjct: 258 TALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHD 317

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 318 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 377

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 378 RDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSID 437

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 438 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 497

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 498 DILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQ 557

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 558 AISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 617

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 618 TEGAAAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 677

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   +  
Sbjct: 678 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKP 714


>gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 712

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|220934183|ref|YP_002513082.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254782744|sp|B8GP06|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 693

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/689 (52%), Positives = 480/689 (69%), Gaps = 3/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
                ++    +  ETG IARQ+ GAVL    +TVVL T V  + +  G+DFFPLTVNYQ
Sbjct: 4   IKKSFQYGQHTVTFETGEIARQASGAVLVNMADTVVLVTAVGLKDVAQGRDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ERTYA G+IPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  VM  + E 
Sbjct: 64  ERTYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMNPEV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P V +M+ ASAAL LSGLPF+GP+  A+V Y+NG YVLNP + E +   LDL V+GT+ 
Sbjct: 124 DPDVPAMLGASAALALSGLPFKGPIGAARVGYLNGAYVLNPSMSELKHSDLDLVVAGTEK 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           AVLMVE EA  LSE+V+L A+++GH + +  I+ I++LA    K      + + +  L+E
Sbjct: 184 AVLMVESEAKLLSEEVMLGAVMYGHEQMQAAIKVINELAAEAGKPAWDWVAPEENVALKE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQAK 301
            ++   + +L  +  I EK  R +Q++ L+  +V+  ++ E  + +  ++   F  ++ +
Sbjct: 244 AVAAACEAELTAAYQIAEKQARNQQVNALRDAVVAKLATGEEGAPSAEKVKGAFGALEKR 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ +L  + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQAIVV TLGT  D Q
Sbjct: 304 IVRSRVLKGEPRIDGRDTRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDRDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            ++++ G +R  FM+HYNF P  TGE   +G+P RREIGHGRLA+R +  V+P  A+ PY
Sbjct: 364 LIEAIEGERRERFMLHYNFPPFCTGETGMVGSPKRREIGHGRLAKRGVQAVMPGEAECPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LR+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGL+K+GD F ++SDI G
Sbjct: 424 VLRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFAVISDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  G++A+QMD+KI GI+  IM  AL QAK GRLHIL +M+ VLSE
Sbjct: 484 DEDHLGDMDFKVAGSKDGVSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAVLSE 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++  + PR   + I PD+IR+VIG GG  IR + E+TG  ++I DDGTVKIAS   A
Sbjct: 544 PRTEVSAYAPRFTTLKIHPDKIRDVIGKGGATIRALTEETGTSIDISDDGTVKIASVDKA 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + AR  I  +T   EV +IY+G+VVK+MDFGAFV     RDGLVHISQ+S ERV   S
Sbjct: 604 AGDEARRRIEELTADVEVGRIYEGRVVKIMDFGAFVTILPGRDGLVHISQISEERVESVS 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           D + EGD V VK+L+ D +G+I+LSMK V
Sbjct: 664 DRLTEGDLVKVKVLEVDKQGRIRLSMKEV 692


>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L]
 gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Kruger B]
 gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Vollum]
 gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
 gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 712

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           EGD-e]
 gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL R2-561]
 gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J0161]
 gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
 gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           EGD-e]
 gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
          Length = 723

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++  + +   E+ S    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEEVKEEILESYKAKELENESEILSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264]
 gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
          Length = 712

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 470/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ ++    +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEVDADILGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 723

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++V+    EK  R   I+++K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKVAIKTEEKKAREAAIEEVKEEILESYKAKELENETEILSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701


>gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25090941|sp|Q8K9H5|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
          Length = 707

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/693 (49%), Positives = 497/693 (71%), Gaps = 2/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+A+  +T V  TVV +++    Q FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYAVG+IPGG+ RRE RP+ENEIL +R+IDR IRPLF K + NE Q+I  V+  
Sbjct: 61  VNYQERTYAVGRIPGGFFRREGRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P ++S++ ASAAL LSG+PF GP+  A+V ++N QYVLNP +D+ + S LDL VS
Sbjct: 121 NPQINPDIISIIGASAALSLSGIPFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GTQ+AVLMVE E+  LSED +L AI+FGH + + VI  I  L+   +K P +I   + + 
Sbjct: 181 GTQNAVLMVEAESKVLSEDKILGAIMFGHQQQQVVINNIRSLSNEASKLPWIISYPEINT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +LE +++++ ++D+  +  I  K  R ++++ LK++++  F SE+S+ +  EI  +FE I
Sbjct: 241 ELELKITKLAEKDISNAYLIFNKQERYEKLNFLKEEIIKLFFSENSNIDISEIEDIFEKI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQ++V VTLGT  
Sbjct: 301 EKNIVRKRILNNENRIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P + GE+  +G+P RREIGHGRLA+R++  V+P+   
Sbjct: 361 DAQNLDELLGDKTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMPKLDD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGI+MGLVK+GD +++LSD
Sbjct: 421 FPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGDKYVLLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKV+GT+ GITA+QMD+KI GI+  IM +AL +AK  RLHILN M + 
Sbjct: 481 ILGDEDHLGDMDFKVSGTEEGITALQMDIKIEGITNEIMRIALNKAKSARLHILNVMKQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           LS+ R ++ EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGT+KI+++
Sbjct: 541 LSKPRNEISEFAPRIHKIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTIKISAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAF+     ++GLVHISQ+S +RV 
Sbjct: 601 IGEKAKNAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISNKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K SD +     + VK+L+ D +G+++LS+K V+
Sbjct: 661 KVSDHLTVDQIISVKVLEIDRQGRLRLSIKEVE 693


>gi|307264921|ref|ZP_07546483.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920179|gb|EFN50391.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 700

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/698 (44%), Positives = 462/698 (66%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++TG++A+Q++GA    YG+TVVL TV   +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLLVQTGKVAQQANGAAWVKYGDTVVLVTVCASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D
Sbjct: 61  EYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +  P +V+M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ + SL  L VSG
Sbjct: 121 PDVQPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DA++MVE  A ++ E+ +LDAI++ H   K +I  I ++ K        +   +   +
Sbjct: 181 TKDAIVMVEAGAKEVPEETMLDAIMYAHEYIKQIIGFIEEIVKEVGVPKSEVILHEIDKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I 
Sbjct: 241 LEEKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D
Sbjct: 300 KEQMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF P + GEV  +  P RREIGHG L  RA+ PV+P   +F
Sbjct: 360 IQILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALGERALEPVIPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI
Sbjct: 420 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+
Sbjct: 480 QGIEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S 
Sbjct: 540 KEPRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L   E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K
Sbjct: 600 LRSGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVVK GD + VK+ D D  G+I LS K    +  + 
Sbjct: 660 VEDVVKVGDNILVKVTDIDKLGRISLSRKDALPDEEEE 697


>gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           10403S]
          Length = 723

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+D+K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKTAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 701


>gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 690

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/690 (44%), Positives = 460/690 (66%), Gaps = 4/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EI+  GR L +E G++A+Q++GAVL  YG+TVVL T    ++ ++G DFFPLTV+Y
Sbjct: 1   MQSFEIDLGGRKLTVEHGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF   ++N+ Q++  V+  + +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P + +M  AS AL +S +PF GP+ G +V YING++V+NP  ++     L+L V+G+ 
Sbjct: 121 NPPEIAAMFGASCALTVSDIPFMGPIAGVRVGYINGEFVINPTEEQRADSDLNLTVAGSY 180

Query: 183 DAVLMVELEANQLSEDVVLDAII-FGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           DAV+MVE  AN+L E++VLDAII FGH E + ++E    + + C KE  +    K   +L
Sbjct: 181 DAVMMVEAGANELPEEIVLDAIILFGHAEIRRLVEFQQNIQQACGKEKQIPSVFKVSEEL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           EE++    +  L  +    +K  R   I  +K++ +++F+ E+      EI  +   I+ 
Sbjct: 241 EEKVRSYAEARLDTATRNSDKLSRDADISAIKEETIAHFAEEYPDA-VKEIAQILYHIEK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR ++  +K+R DGR  + VR +S +VG+L R HGS LF RG TQ + V TLG   DE
Sbjct: 300 GIVRHMITHEKIRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGAIGDE 359

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P    FP
Sbjct: 360 QIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDFP 419

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL+DI 
Sbjct: 420 YTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTDIQ 479

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAGT  G+TA+QMD+KI GI+ +I+  AL+QAK+GR  IL++M + + 
Sbjct: 480 GMEDALGDMDFKVAGTSKGLTAIQMDIKIAGITRDILASALEQAKKGRAFILSKMLECID 539

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           +   +L  + PRVE + I  ++IR+VIG GGKV+R I+++TG  ++I +DG + I S + 
Sbjct: 540 KPAEELSPYAPRVETITIDIEKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFITSPNT 599

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +  AR+MI  I    +V ++Y G+V + + FGAFV     ++GL HISQL+  RV   
Sbjct: 600 EAMNLARKMIEDIVREVQVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHRVENI 659

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVV  GD + VK+++ D++G+I +S KV+
Sbjct: 660 EDVVHIGDQLEVKVVEIDEKGRINVSHKVL 689


>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI]
 gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 712

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    R  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
          Length = 712

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/691 (46%), Positives = 473/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++ IM I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIIIMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 712

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +    L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
           AJ13355]
          Length = 715

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 471/699 (67%), Gaps = 2/699 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 9   NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLTVN 68

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LISR+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 69  YQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNP 128

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE +   LDL V+GT
Sbjct: 129 QVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVAGT 188

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKL 240
           Q+AVLMVE EA  LSE+ +L A++FGH++ + VIE I+ L     K        +  + L
Sbjct: 189 QNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANTAL 248

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  +  +  I +K  R  Q+  +K + ++   +E  S +  EI  +   ++ 
Sbjct: 249 ISRVAALAETRISDAYRITDKQERYTQVGVIKDETIAALLAEDESLDAAEIGDIVHSLEK 308

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVRT +L+ + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 309 NVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDA 368

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FP
Sbjct: 369 QNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFP 428

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 429 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLSDIL 488

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S
Sbjct: 489 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 548

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 549 TPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 608

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 609 LKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 668

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +D ++ G  V VK+++ D +G+++LS+K   +   + + 
Sbjct: 669 TDYLQMGQEVPVKVMEVDRQGRVRLSIKEATETKPEAVA 707


>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
          Length = 712

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ G  V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
           insecticola LSR1]
 gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
           insecticola LSR1]
          Length = 698

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/691 (47%), Positives = 462/691 (66%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG +ARQ++ AV+ +  +T V  TVV  +  K GQ+FFPLT
Sbjct: 1   MLNPIVHKFQYGQHTVTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKPGQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER+YA G+IPG + RRE RP+E E LISR+IDR IRPLF   + NE Q+I  V+  
Sbjct: 61  VNYQERSYAAGRIPGNFFRREGRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E +P +V+M+ ASAAL LS +PF GP+  A+V +IN QY+LNP   E  +  LDL V+
Sbjct: 121 NKEVNPDIVAMIGASAALSLSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  AVLMVE EA  LSE+ +L A+ FGH + + VI  I++L +   K       ++ + 
Sbjct: 181 GTNAAVLMVESEAKMLSEEQMLGAVSFGHEQQQIVINNINELVEKAGKAKWDWCPEEVNQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           KL   +S++ +  L  +  I EK  R  +I+ +K  +      ++   N  E+  +    
Sbjct: 241 KLYTTVSELAEAPLGDAYCIAEKQERYAKINVIKADITQTLLDKNEILNAAEVQDILSYT 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+VR  +L+ K R+D R  +T+R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKKLVRRRVLECKPRIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   +G+P RREIGHGRLA+RA+  V+P    
Sbjct: 361 DAQSLDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVMPSLDD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            PYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVPI + VAGIAMGLVK+GD+F++LSD
Sbjct: 421 CPYTVRIVSEITESNGSSSMASVCGASLALMDAGVPIKEHVAGIAMGLVKEGDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM  AL QAK    HIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRTGITALQMDIKIEGITEKIMEKALHQAKSALSHILDIMEEA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R  + ++ PR+  + I PD+I++VIG GG VIR + E+T   + I+DDGT+KIA+ 
Sbjct: 541 IKKPRSDISQYAPRIHTIKINPDKIKDVIGKGGAVIRALTEETRTTIEIEDDGTIKIAAE 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +I  A   I+ IT  PE  KIY G+V ++ DFGAFV   G R+GLVHISQ++ +R+ 
Sbjct: 601 DNEKIIYAIRRIQEITVDPEPGKIYLGKVTRITDFGAFVSCVGGREGLVHISQIAEKRIE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              D +  G  V VK+++ D +G+I+LSMK 
Sbjct: 661 NIPDHLHIGQEVQVKIIEIDRQGRIRLSMKD 691


>gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           N1-067]
          Length = 723

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+D+K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEVLSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
 gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
          Length = 781

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/701 (53%), Positives = 505/701 (72%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IE  G+ L LETGRIARQ+D AVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+  
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D ES P +V+M+AASAAL LSG+PF GP+  A+V Y +G+Y LNP LDE + G LDL V+
Sbjct: 121 DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T  AV+MVE EA +LSEDV+L A++F H   K ++ AI  LA+  AK+P  +    D  
Sbjct: 181 ATGSAVMMVESEAKELSEDVMLGAVLFAHEASKKIVNAIIDLAEKAAKDPWDVAKGDDLE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-ED 297
            L++++ ++I +D+  +  + +K  R   +++ + K  + F ++              + 
Sbjct: 241 DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKAQFVADGLDAQTVMAGIKLTKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VR  +L    R+DGR +  +R I A VG L RTHGS+LF RG+TQ+I   TLGT+
Sbjct: 301 LEAEIVRGAILKDGKRIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L+G    +FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 361 DAEQMIDGLNGVYYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G +F +LS
Sbjct: 421 EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I  +AL+QAK GR HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS +R +L    PR+E + I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+S
Sbjct: 541 ALSSTRTELSAHAPRIETIQIDKAKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A+IEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 601 SDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 661 EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 701


>gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont]
          Length = 710

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/700 (47%), Positives = 474/700 (67%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GTQ+AVL+VE EA+ L+ED +L A++FGH++ + VIE I+ L     K            
Sbjct: 181 GTQNAVLIVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPAND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  +  +  I +K  R  Q+  +K + ++   +E  + ++ EI  +   +
Sbjct: 241 ALIARVAALAEARISDAYRITDKQERYAQVGVIKDETIAALLAEDETLDDAEIGDIVHSL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVRT +L+ + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQNLDELMGERTDSFLFHYNFPPFSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQDA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISTPRQEISEFAPRIYTIKINTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
           K +D ++ G  V VK+++ D +G+++LS+K   +Q   + 
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATEQKPAEE 700


>gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
           102972]
 gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
           102972]
          Length = 711

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/700 (49%), Positives = 482/700 (68%), Gaps = 3/700 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA  LSE+ +L A++FGH++ + VI+AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++ +   +E+   N  EI ++F D
Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAENEELNPKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSID 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ DDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A   I  IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ +R+
Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K SDV+ EG  V VK+L+ D +G+++LSMK   +   + 
Sbjct: 661 EKVSDVLSEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEE 700


>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           weihenstephanensis KBAB4]
 gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
 gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
          Length = 717

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/691 (46%), Positives = 469/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M + D+  +  + EK+ R   I  +KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAETDMHSAIQVHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PVLP    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R++L  + P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNEKAKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
 gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
          Length = 712

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 470/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M    RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGQGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum
           STM815]
 gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum
           STM815]
          Length = 712

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/703 (48%), Positives = 484/703 (68%), Gaps = 7/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVVKEFKWGQHTVRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+VM  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YIN +YVLNP   + +GS LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K      +     
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKAEWEWQAAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-----VSYFSSEHSSWNEGEIVS 293
            L   ++++   +L  +    +K  R  ++ ++             ++   + ++  + +
Sbjct: 243 ALISRVNEIAYNELLSAYQTRDKQARSTKLKEVYAATQAKLEEEAAAAGTVAADKASVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+  +S    +L  + PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMTSAVSGVNTELSAYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I +IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS+++
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEVEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            ER+   +D +KEG  V VK++  D++G+++LS K +     +
Sbjct: 663 NERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAQ 705


>gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans BC]
 gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans K601]
 gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans BC]
 gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans K601]
          Length = 731

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/697 (47%), Positives = 480/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QL EDV+L A+++GH + K  I+AI +L +   K       +    
Sbjct: 183 GTETAVLMVESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDAGKPVWDWQPEAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++++ +  LR +     K +R +   +    + +  + +   ++  ++ ++  DI
Sbjct: 243 ALIAKVAELGEGTLRAAYQNRNKQLRTQACREAYAAVKAGLTEQGVEFDAVKVDNMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EARIVRSQILAGEPRIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RRE+GHGRLA+RA+   LP   +
Sbjct: 363 DAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVACLPSKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG  IR + ++TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKTEISSFAPKLFTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   E+ K+Y+G V KV+DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 EAAKADEAKRRIEEITAEVEIGKVYEGPVTKVLDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +  D ++EG  V VK+L+ DD+G++KLSMK + +   
Sbjct: 663 RVGDYLQEGQIVKVKVLETDDKGRVKLSMKALAERPA 699


>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
 gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
          Length = 724

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/697 (49%), Positives = 479/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      ++    ++ ETG IARQ+ GAV+    +TVVLATVV  + +K GQDFFPLT
Sbjct: 3   MFNKVVKSFKYGDHNVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE Q+II+V+  
Sbjct: 63  VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YIN +YVL P L + + S LDL V+
Sbjct: 123 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA+QLSE+V+L A++FG+ + + VIEAI +L +   K        +   
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEEAGKPLWDWAPAERNQ 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
           +L   ++Q++   +  +     K  R + +  +   +    ++     E +   E E+ +
Sbjct: 243 QLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGENEVAN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  +++A  VR  +L  + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA+VV T
Sbjct: 303 ILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ VD L+G QR  FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VL
Sbjct: 363 LGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALTAVL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEI ES+GSSSMA+VCG  L+L+DAGVP+   VAG+AMGL+K+G+ F
Sbjct: 423 PNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGTD G+TA+QMD+KI GIS+ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +   + +L  + PR+    I PD+IR+VIG GG VIR + E+TG ++NI+DDGTV
Sbjct: 543 KMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIEDDGTV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A    AR  +  +    EV K+Y+G+V +++DFGA V     RDGL+HISQ++
Sbjct: 603 TIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLHISQIA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV + SD +KEG  V VK+L+ DD+ +I+LSMK +
Sbjct: 663 HERVNQVSDYLKEGQIVRVKVLEIDDKDRIRLSMKAL 699


>gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
           KT99]
 gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
           KT99]
          Length = 702

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/695 (49%), Positives = 469/695 (67%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E +P V+SM+  SAAL +SGLPF GP+  A+V YING+Y+LNP + +  +  LDL V+G
Sbjct: 121 PEINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSK 239
           T+ AVLMVE EA  L+E+V+L ++ +GH + + VI AI +L     K      +      
Sbjct: 181 TEGAVLMVESEAASLAEEVMLGSVAYGHEQQQVVITAIKELKAEAGKPAWDWTAPVSDED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +E    +  I +K  R   ++ LK   +    +E++  +  E+  +   ++
Sbjct: 241 LVAKIKALAEEKFSAAYQIADKSERRDAVNALKSDAIEKLVAENADVDLREVGKILSSVE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR  +L  K R+DGR+ + VR ++   G+L RTHGS++F RG+TQA+V  TLGT  D
Sbjct: 301 KQVVRGRILAGKPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VDS+ G   N FM+HYNF P   GE   +G+P RREIGHG+LA R +  V+P   +F
Sbjct: 361 AQKVDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMKAVMPSAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMATVCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSIRVVSEITESNGSSSMATVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  +    PR+ I+ I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GTHRDDISAHAPRITIIKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV  IY G+VV+++DFGAFV     +DGLVHISQ++ ERVA 
Sbjct: 601 SEATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            SD ++ G  V VK+++ D +G+++LSMK      
Sbjct: 661 VSDYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKA 695


>gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis
           HAW-EB4]
 gi|257096707|sp|B0TQ97|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 704

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/689 (50%), Positives = 467/689 (67%), Gaps = 2/689 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVN
Sbjct: 5   NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVN 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+TYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVII V+  D 
Sbjct: 65  YQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           E SP V+SM+  SAAL +SG+PF GP+  A+V Y+NG+Y+LNP + +     L+L V+GT
Sbjct: 125 EISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
             AVLMVE EA+ L E+V+L A+++GH++ + VI+AI +L     K      +    + L
Sbjct: 185 DSAVLMVESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWAAPVQDETL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++  + +  L  +  I  K  R  Q+  +K        +E+   N  EI  +   ++ 
Sbjct: 245 VAKIKDLAEAGLTEAYQIEVKQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  ++    R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLGT  D 
Sbjct: 305 KVVRGRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +DS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FP
Sbjct: 365 QKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 425 YSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + + 
Sbjct: 485 GDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAIG 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + E  PR+  + I P++IR+VIG GG  IR + E+TG  + +DDDGTVKIASS+ 
Sbjct: 545 SHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSNG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A   I  IT   EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA  
Sbjct: 605 EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           SD ++ G  V VK+++ D +G+++LSMK 
Sbjct: 665 SDYLEVGQEVKVKVMEVDRQGRVRLSMKE 693


>gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
 gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
          Length = 708

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/698 (48%), Positives = 480/698 (68%), Gaps = 2/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  +GQDFFPLTV
Sbjct: 1   MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
              SP +V+M+  SAAL +SG+PF GP+  A+V YIN Q+VLNP  ++ ++  LDL V+G
Sbjct: 121 PAVSPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T+DAVLMVE EA++LSE+ +L A++FGH++ +  I AI++ A   A      +  ++ + 
Sbjct: 181 TKDAVLMVESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++ +  L  +  I EK  R  +I ++  ++     +E +  N  EI ++F D++
Sbjct: 241 LKNKIAELAEAKLVDAYQITEKMARYDRIHEIAGEVNDAILAEDAEANSKEIHTIFHDLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D
Sbjct: 301 KTVVRGRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G  ++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +F
Sbjct: 361 AQIIDGLTGETKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 541 NTPREDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATE 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV   G ++GLVHISQ+S +RV K
Sbjct: 601 GTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            SD ++ G  V VK+L+ D +G+I+LSMK   +     
Sbjct: 661 VSDYLQMGQEVQVKVLEIDRQGRIRLSMKEAVETPAAE 698


>gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           KN400]
          Length = 740

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/687 (48%), Positives = 464/687 (67%), Gaps = 3/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V +E+ GR + + TG+ A+Q+ GAV+ + G+TVVL T V  +S ++GQDFFPLTVNYQ
Sbjct: 47  HKVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQ 106

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP++NE L SR IDR IRPLF + + N+TQ++  V+  D ++
Sbjct: 107 EKAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDN 166

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++M+ ASAAL +S +PF GP+ G +V  ++GQ+V NP +++ ++  L++ V+ ++D
Sbjct: 167 DPGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRD 226

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AV+MVE  A + SE  VL+AI FGH   +P+IEA + L K+       + +    + L+ 
Sbjct: 227 AVIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVDEALKT 286

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +  +    ++ +  I  K  R  +I ++  + +     E+    E EI     D + ++
Sbjct: 287 RVKDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPEYEG-RESEIKGFLGDFEYEL 345

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++    R+DGRD+ T+R IS +V +L R HGS+LF RG+TQA+V  TLGT  DEQ 
Sbjct: 346 VREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQR 405

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DSL G  R  F++HYNF P + GE S   AP RREIGHG LA RA+  V+P+   FPYT
Sbjct: 406 IDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYT 465

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVS+I ES+GSSSMATVCG +LA+MDAGVPI  PVAGIAMGL+K+G+   ILSDI GD
Sbjct: 466 IRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILGD 525

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT++G+TA+QMD+KI G++  IM  AL QA+ GRLHIL +M++ ++  
Sbjct: 526 EDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAAP 585

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L  + PR+  + +  D+IR+VIG GGK IRGI E TG  ++I+D G + IAS+S   
Sbjct: 586 RTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKEA 645

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A +MIR +T   E  K+Y G V KVMDFGAFV      DGLVHIS+L TERV   +D
Sbjct: 646 CDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTD 705

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V+ EGD V VK +  D +GKIKLS K 
Sbjct: 706 VLNEGDKVLVKCIGIDKQGKIKLSRKE 732


>gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
           SKA34]
 gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
           SKA34]
          Length = 708

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/698 (48%), Positives = 481/698 (68%), Gaps = 2/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  +GQDFFPLTV
Sbjct: 1   MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
              +P +V+M+  SAAL +SG+PF GP+  A+V YIN Q+VLNP  ++ ++  LDL V+G
Sbjct: 121 PAVNPDIVTMIGTSAALTISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T+DAVLMVE EA++LSE+ +L A++FGH++ +  I AI++ A   A      +  ++ + 
Sbjct: 181 TKDAVLMVESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++ +  L  +  I EK  R  +I ++  ++     +E +  N  EI ++F D++
Sbjct: 241 LKNKIAELAETKLVEAYQITEKMARYDRIHEIAGEVNDAILAEDAEANTKEIHTIFHDLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D
Sbjct: 301 KTVVRGRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +F
Sbjct: 361 AQIIDGLTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + +F PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 541 NTPREDISQFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATE 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV   G ++GLVHISQ+S +RV K
Sbjct: 601 GTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            SD ++ G  V VK+L+ D +G+I+LSMK   +     
Sbjct: 661 VSDYLQMGQEVQVKVLEIDRQGRIRLSMKEAVETPAAE 698


>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
 gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
          Length = 712

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   K  + I   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+ +KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
           Nc4]
 gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
           Nc4]
          Length = 711

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/690 (50%), Positives = 477/690 (69%), Gaps = 3/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                IE+  R L LETG IARQ+ GAV+  YGET VL T V  +   +G+DFFPLTVNY
Sbjct: 19  PIRKVIEYGDRSLVLETGCIARQATGAVVVHYGETAVLVTAVGVKEAIEGRDFFPLTVNY 78

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D E
Sbjct: 79  QERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVISSDGE 138

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P + S++ ASAAL LSG+PF  P+  A+V YI+G+YVLNP L + + S LDL V+GT+
Sbjct: 139 NDPDIPSLIGASAALALSGIPFTTPIAAARVGYIDGRYVLNPTLSQMEKSALDLVVAGTE 198

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
            AVLMVE EA +L E+++L ++IFGH E + VI+AI +LA+   K P    +  +   L 
Sbjct: 199 KAVLMVESEARELPEEIMLGSVIFGHQEMQAVIQAIRELAEEAGKAPWDWSTPVEDEDLM 258

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDIQA 300
             +    +  L+ +  +  K  R   + + +  +V      E   W++ +++     ++ 
Sbjct: 259 SAVWDCGEARLQEAYQVRSKQDRQASLAEARSFIVERLVPEEDPQWSKEQVLEAVSALEK 318

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  +L    R+DGRD+++VR I+   GLL R HGS+LF RG+TQ++V  TLGT  D 
Sbjct: 319 RLVREQILAGGERIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTERDA 378

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++ G +R  FM+HYNF P   GE   +GAP RREIGHGRLA+R+++ V+P    FP
Sbjct: 379 QVIDAIEGERRERFMLHYNFPPYCVGETGFVGAPKRREIGHGRLAKRSLNAVVPDEESFP 438

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI++PVAGIAMGL+K+ D F +LSDI 
Sbjct: 439 YVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPITEPVAGIAMGLIKERDQFAVLSDIL 498

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA+ GRLHIL +M++V+S
Sbjct: 499 GDEDHLGDMDFKVAGTGKGVTALQMDIKIDGITEEIMRTALSQAREGRLHILQKMNEVIS 558

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ E+ PR+ +  I P++IR+VIG GG  IR + E+TG  ++I DDGTVKI SS  
Sbjct: 559 APRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDITDDGTVKIFSSDK 618

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A+ + AR  +  I    EV KIY+G+V ++MDFGAFV     +DGL+HISQ+S ERV   
Sbjct: 619 ADGQEARRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISDERVKNV 678

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SD + EGD + VK+L+ D +G+++LS+K +
Sbjct: 679 SDKLSEGDIIRVKVLEVDKQGRVRLSIKAI 708


>gi|51892669|ref|YP_075360.1| polynucleotide phosphorylase/polyadenylase [Symbiobacterium
           thermophilum IAM 14863]
 gi|81388937|sp|Q67P77|PNP_SYMTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51856358|dbj|BAD40516.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM
           14863]
          Length = 762

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/708 (43%), Positives = 444/708 (62%), Gaps = 17/708 (2%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +  +E  GR + LETGR+A+Q+ G+VL  YG++VVL T V   + ++G DFFPLTV+Y+E
Sbjct: 20  SFSMELGGRTMTLETGRLAKQASGSVLVNYGDSVVLCTAVGSATPREGVDFFPLTVDYEE 79

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R Y+VG+IPG + RRE RPT   IL +R+ DR IRPLF + ++N+ QV+  V+  D +  
Sbjct: 80  RMYSVGRIPGNWFRREGRPTSKAILWARLTDRPIRPLFPEGFRNDVQVVCTVLSVDPDHP 139

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
             ++ M+ ASAAL +S +PFEGP+ G  V  ++GQ+V+NP  ++ +   + L V+GT+ A
Sbjct: 140 VEIMGMIGASAALTISDIPFEGPIGGVIVGLVDGQFVINPTAEQQERSEMHLVVAGTEHA 199

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECK-PVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
           VLMVE  A ++ E  +LDAI+FGH   K  +I  I ++     K    +       +LE+
Sbjct: 200 VLMVEAGAKEVPEQTMLDAILFGHEVIKNTIIPTIKQMQAEVGKPKREVVLFNPPPELEQ 259

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +     LR +   P+K  R + +  + + + +  + +    +E  I  + + +  + 
Sbjct: 260 AVREAATVRLREAVRNPDKLAREEAVAAVGEAVQAELAEQFPE-SEKHIAYLLKKVLKEE 318

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++++ +R DGR    +R I   V LL R HGS LF RG TQ + + TLGT  D Q 
Sbjct: 319 VRRAIIEEGIRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQK 378

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L+  +   FM HYNF P + GE   +  P RREIGHG LA RA+ PV+P   +FPYT
Sbjct: 379 LDDLTLEETKRFMHHYNFPPYSVGETRPLRGPGRREIGHGALAERALEPVIPPEEEFPYT 438

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDIS 480
           +R+VSE+ ES+GSSSMA+VCGS+LALM AGVPI  PVAG+AMGLV   +   + +L+DI 
Sbjct: 439 IRVVSEVLESNGSSSMASVCGSTLALMAAGVPIKAPVAGVAMGLVEDPETGRYAVLTDIQ 498

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAGT  G+TA+QMDMKI G S  I+  AL QA+ GR+ I+ +M   +S
Sbjct: 499 GIEDALGDMDFKVAGTKKGVTALQMDMKISGTSREILEKALMQAREGRMFIMEKMLACIS 558

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ-----TGAKVNIDDDGTVKI 595
           E R +L  + PR+  M I P++IR+VIG GG  I  I+E+     T  +++I DDGT+ I
Sbjct: 559 EPRKELSPWAPRIITMKISPEKIRDVIGKGGSTINKIIEETKVGHTKVEIDIQDDGTIYI 618

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+ +L   E AR+MI ++   PE   IY G+V ++M FGAFV     ++GLVHIS+LS +
Sbjct: 619 AAVNLEAGERARQMIEALVKDPEPGMIYTGRVTRLMQFGAFVEILPGKEGLVHISELSDK 678

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK------VVDQNTGKP 697
           RVA+  DVV  GD V VK+ + D  G+I LS+K         Q +G+P
Sbjct: 679 RVARVEDVVNIGDEVTVKVTEIDRLGRINLSIKDAMPKQAASQPSGRP 726


>gi|315126162|ref|YP_004068165.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
           SM9913]
 gi|315014676|gb|ADT68014.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
           SM9913]
          Length = 708

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/696 (48%), Positives = 474/696 (68%), Gaps = 5/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQ
Sbjct: 4   IIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E 
Sbjct: 64  ERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+M+  SAAL +SG+PF GP+  ++V YING+YVLNP L E ++  LDL V+GT +
Sbjct: 124 QPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGTDN 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           AVLMVE EA+ L+EDV+L A+++GH + + +I+AI++      K      + + +  LEE
Sbjct: 184 AVLMVESEADVLAEDVMLGAVVYGHEQSQSIIKAINEFKAEAGKPTWDWTAPEKNVALEE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDIQ 299
           +++ +  + +  +  I +K  R + +   K  +V   +   +E  + ++ E+  VF  ++
Sbjct: 244 KVATLAADKVGEAYRITDKVARKEALTAAKDAVVEALTSELAEGETLDKQEVGKVFGSLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D
Sbjct: 304 KKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P   +F
Sbjct: 364 SQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTLTEF 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ ++F++LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVLSDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +
Sbjct: 484 LGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMDEAI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S    +L  F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++ 
Sbjct: 544 SAPSEELSMFAPRIYTMQIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV  
Sbjct: 604 GESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +D + EG  V VK+L+ D +G+++LS+K   ++  
Sbjct: 664 VADHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAA 699


>gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 711

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/700 (49%), Positives = 482/700 (68%), Gaps = 3/700 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA  LSE+ +L A++FGH++ + VI+AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++ +   +E+   N  EI ++F D
Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAENEELNPKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSID 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  + + A   I  IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ +R+
Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K SDV+ EG  V VK+L+ D +G+++LSMK   +   + 
Sbjct: 661 EKVSDVLSEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEE 700


>gi|119470827|ref|ZP_01613438.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Alteromonadales bacterium TW-7]
 gi|119446054|gb|EAW27333.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Alteromonadales bacterium TW-7]
          Length = 708

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/696 (48%), Positives = 471/696 (67%), Gaps = 5/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQ
Sbjct: 4   IIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E 
Sbjct: 64  ERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+M+  SAAL +SG+PF GP+  A+V YI G+YVLNP L E ++  LDL V+GT +
Sbjct: 124 QPDMVAMIGTSAALAISGIPFSGPIGAARVGYIGGEYVLNPTLKELEESQLDLVVAGTDN 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AVLMVE EA+ L+EDV+L A+++GH + + +I AI++      K      + + +  LEE
Sbjct: 184 AVLMVESEADVLAEDVMLGAVVYGHEQSQSIINAINEFKAEAGKPTWDWTAPEKNVSLEE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDIQ 299
           +++++  + +  +  I +K  R + +   K  ++   S   +E  + ++ E+  VF  ++
Sbjct: 244 KVAELAADKVGEAYRITDKVARKEALGVAKDAVIEALSSELAEGETLDKQEVGKVFGSLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D
Sbjct: 304 KKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P    F
Sbjct: 364 SQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTLTDF 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKFVVLSDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +
Sbjct: 484 LGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S    +L  F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++ 
Sbjct: 544 SAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV  
Sbjct: 604 GESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +D + EG  V VK+L+ D +G+++LS+K   ++  
Sbjct: 664 VADHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAA 699


>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
 gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
          Length = 712

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE + +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKLAVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
 gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
          Length = 712

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSDKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 723

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+D+K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILEGYKTKELENEAEVLSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
 gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
          Length = 771

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/701 (53%), Positives = 507/701 (72%), Gaps = 3/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V IE  G+ L LETGRIARQ+D AVLATYGETVVL  V   +S+K+GQDFFPLT
Sbjct: 1   MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR +RPLF + + NE  VI  V+  
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D ES P +V+M+AASAAL LSG+PF GP+  A+V Y +G+Y LNP LDE + G LDL V+
Sbjct: 121 DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T +AV+MVE EA +LSEDV+L A++F H   K V+ AI  LA+  AK+P  +    +  
Sbjct: 181 ATGNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLD 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF-ED 297
            L++++ ++I +D+  +  + +K  R   I+  + K  ++F+ E              + 
Sbjct: 241 DLKKKLKKLIGKDIAAAYKLTDKSARSSAINAARDKAKAFFAEEGLDAQSVMAGIKLTKK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A++VRT +L +  R+DGR +  +R I A VG L RTHGS+LF RG+TQAI   TLGT+
Sbjct: 301 LEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + EQ +D L+G     FM+HYNF P + GEV R GAP RRE+GHG+LA RA+HPVLP   
Sbjct: 361 DAEQMIDGLTGLHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R++S+ITES+GSSSMATVCG SL++MDAGVP+ +PV+GIAMGL+ +G +F ++S
Sbjct: 421 EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAVIS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GIT MQMD+K+ GI++ I  +AL+QAK GR HIL EMSK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS +R +L    PR+E + I   +IR+VIG GGKVIR IV +TGAKV+IDD+G +KI+S
Sbjct: 541 ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S + +IEAA++ I  I +  EV KIY G+VV ++DFGAFV+F G +DGLVH+S++  ERV
Sbjct: 601 SDINQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K +DVV EG  V VK+L+ D RGK++LSM+VVDQ TG+ +
Sbjct: 661 EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEEL 701


>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 713

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/695 (49%), Positives = 487/695 (70%), Gaps = 7/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++  + + +ETG IARQ+ GAV+ +  +TVVLATVV    +K GQDFFPLT
Sbjct: 1   MFNKVSKTFQYGQQTVTMETGEIARQASGAVMVSVDDTVVLATVVAKDDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA G+IPG + +RE RP+E E L SR+IDR IRPLF + Y NE QVII+V+  
Sbjct: 61  VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E  P + SM+AASAAL +SG+PF GP+  A+V YI+GQYVLNP   +     +DL V+
Sbjct: 121 NPEVDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA +L ED++L A++FGH + K VI+AI +L +   K  +         
Sbjct: 181 GTEQAVLMVESEAEELPEDIMLGAVVFGHEQMKVVIDAIDELVRDGGKPEVEWAPPAKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
           +L   ++++ + +LR +  I +K  R  ++  +   +    ++E         +  E+ +
Sbjct: 241 ELIAAVTRIAEPELRKAYQIRQKQARSTELRHIYDNVSKTLAAEAQDKGVSAPDSVEVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +LD + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 301 IMFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D+L G   + FMMHYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIACL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEI ES+GSSSMA+VCG SLALMDAGVP+   VAGIAMGL+K+G+ F
Sbjct: 421 PSQEEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKNHVAGIAMGLIKEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +G+ A+QMD+KI GI++ IM +AL QA+ GR+HIL+
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGVNALQMDIKIQGITKEIMQVALAQAREGRMHILS 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + + + + +L +F PR+  + I P++IR+VIG GG VIRG+ E+TGA+++I DDG V
Sbjct: 541 KMQEAMPQFKTELSDFAPRLITIRINPEKIRDVIGKGGAVIRGLTEETGAQIDITDDGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQILPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +ERV   +D ++EG  V VK+L+ DDRG+IKLSMK
Sbjct: 661 SERVNAVTDYLEEGQAVRVKVLETDDRGRIKLSMK 695


>gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter
           salexigens DSM 3043]
 gi|122990389|sp|Q1QSZ4|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 707

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/693 (48%), Positives = 464/693 (66%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETGRIARQ+ GAV+ T  +TVVL TVV  + +   Q FFPL+V
Sbjct: 1   MNPVKKTFQYGHSTVTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+TYAVGKIPGG+ +RE RPTE E L SR+IDR IRPLF   + NE QV+  V+  D
Sbjct: 61  HYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS-LDLFVS 179
               P + +M+  SAAL +SG+PF GP+  A+V +  +  Y LNP ++E + S L++ V+
Sbjct: 121 RNHDPDIAAMLGTSAALAISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSELNMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA +L ED +L A++FGH E +  I AI  LA    K         D +
Sbjct: 181 GTEKAVLMVESEAKELLEDEMLGAVLFGHQEMQAAITAIQALADEAGKPRWDWQPPTDDT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
            L+  ++   +  +  +  I +K  R   +  LK + +   + E S  +   ++   F  
Sbjct: 241 TLKSALAAEFEAKVGEAYRITDKMARQDALSALKDEALERLAGEESGQYAADDVKGAFAS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR+ ++  + R+DGRD  TVR +S +VG L +THGS++F RG+TQA+VV TLGT 
Sbjct: 301 LEKRVVRSRIIQGEPRIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVVATLGTL 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q ++SL G +++ F++HYNF P + GE   MG P RREIGHGRLARR +  +LP   
Sbjct: 361 RDAQLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAMLPSEE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVKD D F +L+
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDEDGFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+E IM  ALQQA   RLHIL +M+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGSTAGVTALQMDIKIEGINEEIMETALQQAHEARLHILEQMNT 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+++SR ++ +  P +  + I PD+IR+VIG GG  IR I + TGA +++DDDGTV+I +
Sbjct: 541 VIAQSRSEVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICDDTGASIDLDDDGTVRIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 +AA + + +IT  PE+ K+Y+G V ++ DFGAFV F    DGLVHISQ+  ERV
Sbjct: 601 EDKTAAKAAIDTVLAITAEPEIGKLYRGTVARITDFGAFVTFMPGTDGLVHISQIVPERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               D + EG  V VK+LD D+R ++KLS+K V
Sbjct: 661 NDVRDYLSEGQEVIVKVLDIDNRNRVKLSIKEV 693


>gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           CMCP6]
 gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6]
 gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 708

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 476/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A   A      +  +  
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L E+++ + +  L  +  I EK  R  +I ++  ++ +   +E    +  EI ++F D
Sbjct: 241 TALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSID 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   +  
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKP 697


>gi|262274879|ref|ZP_06052690.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
           101886]
 gi|262221442|gb|EEY72756.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
           101886]
          Length = 709

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/696 (48%), Positives = 481/696 (69%), Gaps = 3/696 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+ +  +T V  +VV  +   +GQDFFPLTV
Sbjct: 1   MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKDAVEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDHFKNEVQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
              +P +V+M+  SAAL +SG+PF GP+  A+V YIN + VLNP   E ++  LDL V+G
Sbjct: 121 PNVNPDIVAMIGTSAALSISGIPFNGPIGAARVGYINDELVLNPSNKELEESRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T +AVLMVE EA++LSE+ +L A++FGH++ + VI AI + A   A       + + + +
Sbjct: 181 TDNAVLMVESEADRLSEEQMLQAVVFGHDQQQVVINAIKEFAAEVATPAWEWSAPEVNTE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+  ++++ +  L  +  I EK  R  ++ ++K  +V     +  S +  EI  +   ++
Sbjct: 241 LKARVAELAEAQLTEAYQITEKMARYTRVGEIKSAVVEQLLEQDESLDAREIQGMLSSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +VVR+ ++  + R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+ D
Sbjct: 301 KQVVRSRIIAGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D ++G + ++F+ HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +F
Sbjct: 361 AQIIDEITGERTDNFLFHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSQEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI K VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKKSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD G+TA+QMD+KI GI++ IM +AL QAK  RLHILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDGVTALQMDIKIEGITKEIMQIALNQAKGARLHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S +R  + EF PR+  + I P++I++VIG GG VIR + E+T   + I+DDGTVKIA++ 
Sbjct: 541 SSARDDISEFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETDTTIEIEDDGTVKIAATD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + +AA   I ++T   EV +IY G+V +++DFG FV   G ++GLVHISQ++ +R+ K
Sbjct: 601 GEKAKAAIARIEALTAEVEVGRIYTGKVTRIVDFGCFVSVIGTKEGLVHISQVADKRIEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNT 694
            SD V+ G  V VK+L+ D +G+I+LSMK  V+Q  
Sbjct: 661 VSDYVEMGQEVQVKVLEIDRQGRIRLSMKEAVEQAP 696


>gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase/polyadenylase [Haemophilus ducreyi
           35000HP]
 gi|81423299|sp|Q7VL91|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 712

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/692 (48%), Positives = 473/692 (68%), Gaps = 2/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + LETG IARQ+  AV+A+  +T V  +VV  + +K+GQDFFPLTVNY
Sbjct: 3   PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGG+ +RE RP+ENE LI+R+IDR IRPLF + + NE Q++  V+  + +
Sbjct: 63  QERTYAAGRIPGGFFKREGRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQ 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQ 182
            SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + ++ Q  LDL V+GT 
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLDLVVAGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
            AVLMVE EA+ LSE+ +L A++FGH + + VIE I +  K   K        +  + L 
Sbjct: 183 KAVLMVESEADILSEEQMLAAVVFGHQQQQIVIENIKEFVKEAGKPRWDWQPAEANTALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++  + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   +++ 
Sbjct: 243 NQVKALAETRIGDAYRITEKQARYEQIDAIKADVIAQLTAQDETISEGAIIDIITALESS 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L  + R+DGR  +TVR ++   G+L RTHGS++F RG+TQA+ V TLGT  D Q
Sbjct: 303 VVRGRILAGEPRIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKATVAGIAMGLVKEDEKFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL QAK  R+HILN M + L  
Sbjct: 483 DEDHLGDMDFKVAGTRKGITALQMDIKIEGITPEIMHIALNQAKGARMHILNVMEQALPA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++   
Sbjct: 543 PRADLSDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAATDNN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +     I  I    EVN IY G+V +V+DFGAFV   G ++GLVHISQ++  RV + S
Sbjct: 603 AAKMVMSRIEEIVAEVEVNAIYTGKVSRVVDFGAFVTILGGKEGLVHISQITDARVERVS 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D +  G  V VK+++ D + +I+L+MK +D N
Sbjct: 663 DYLSVGQEVNVKVVEIDRQNRIRLTMKDLDNN 694


>gi|262277754|ref|ZP_06055547.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HIMB114]
 gi|262224857|gb|EEY75316.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HIMB114]
          Length = 692

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/690 (53%), Positives = 504/690 (73%), Gaps = 3/690 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   EI WAG+ L +ETG+IARQ+DGAV+  +G+TV+++T V  +      DFFPLT
Sbjct: 1   MFNIVKKEINWAGKNLSIETGKIARQADGAVILRWGDTVIISTAVASKKTNPDTDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   ++NETQV+  V+ +
Sbjct: 61  VNYQEKFYAAGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDQFRNETQVLTTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E  P +++++A+SAAL +SGLPF+GPV  ++V  I+G+++LNP  +  + S L+L V+
Sbjct: 121 DKECDPDILAVIASSAALSISGLPFQGPVAASKVGLIDGKFILNPSKESIKSSNLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA+ L+E  +LDA+ FGH    PVI  I +LAK  +K    I+SKDFS+
Sbjct: 181 GTKEAVLMVESEASGLTEAQMLDAVKFGHENFLPVINLIEELAKEASKPKWEIESKDFSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++S  +K+ L  +    +K  R   I +  +K+         ++ + +I    + ++
Sbjct: 241 LKSKISSEVKDHLVKAFSEKDKKQRSSMISEANEKV-EKLFEGDETYTKVQIKDQLKSLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VRT +L +K R+DGR  + VRDI  +VG++ R HGSSLF RG+TQAIV  TLGT +D
Sbjct: 300 KDIVRTKILKEKSRIDGRKLDEVRDILCEVGIIPRAHGSSLFTRGETQAIVAATLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ  +SL G Q++ FM+HYNF P + GEV R+G   RREIGHG+LA RAI+  LP+   F
Sbjct: 360 EQRFESLEGMQKSRFMLHYNFPPFSVGEVGRVGGTGRREIGHGKLAWRAINAALPKHEDF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIVS+ITES+GSSSMATVCGSS+ALM AGVPI KP+AGIAMGL+K+G++F +LSDI
Sbjct: 420 PYTIRIVSDITESNGSSSMATVCGSSMALMHAGVPIEKPIAGIAMGLIKEGNEFSVLSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GIT++QMD+KI GI+  IM  AL+QAK+GRL ILNEM+K +
Sbjct: 480 LGDEDHLGDMDFKVAGSADGITSLQMDIKINGITFEIMEKALEQAKKGRLDILNEMAKAI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            ES  +L ++TPR+E + +    I  VIG GG  IR IVE +GAKV+I+D G V ++++ 
Sbjct: 540 KESNKELSQYTPRMEKIQVDKKDIATVIGKGGANIREIVEVSGAKVDINDSGEVTVSAAD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A +MI S+ + PEV KIY G+VVK+MDFGAFV+F G +DGLVHISQL+ +RV K
Sbjct: 600 QETRDKAIQMINSLVEKPEVGKIYSGKVVKIMDFGAFVNFLGKQDGLVHISQLAEKRVEK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            SDVVKEGD V VK++ FD RGK+KLS+K 
Sbjct: 660 VSDVVKEGDEVNVKVIGFD-RGKVKLSIKE 688


>gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana
           ATCC 700345]
 gi|257096708|sp|A8H735|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 704

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/687 (50%), Positives = 469/687 (68%), Gaps = 2/687 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      ++    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVN
Sbjct: 5   NPIVKSFQYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVN 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+TYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVII V+  D 
Sbjct: 65  YQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           E SP V+SM+  SAAL +SG+PF GP+  A+V Y+NG+Y+LNP + +     L+L V+GT
Sbjct: 125 EISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA+ L E+V+L A+++GH++ + VI+AI +L     K      +    + L
Sbjct: 185 ESAVLMVESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWSAPAQDETL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++  + +  L  +  I  K  R  Q+  +K        +E+   N  EI  +   ++ 
Sbjct: 245 VAKIKDLAEAGLTEAYQIEVKQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  ++  + R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLGT  D 
Sbjct: 305 KVVRGRIISGQPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +DS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FP
Sbjct: 365 QKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 425 YSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QA   R+HIL+ M + +S
Sbjct: 485 GDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALKQAYGARVHILDVMDRAIS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + E  PR+  + I P++IR+VIG GG  IR + E+TG  + +DDDGTVKIASS+ 
Sbjct: 545 GHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSNG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A   I  IT   EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA  
Sbjct: 605 EATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           SD ++ G  V VK+++ D +G+++LSM
Sbjct: 665 SDYLEVGQEVKVKVMEVDRQGRVRLSM 691


>gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
 gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
          Length = 689

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/689 (44%), Positives = 460/689 (66%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EI+  GR L +E G++A+Q++GAVL  YG+TVVL T    ++ ++G DFFPLTV+Y
Sbjct: 1   MQSFEIDLGGRKLTVEYGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF   ++N+ Q++  V+  + +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +   + +M+ AS AL +S +PF GP+ G +V YING +V+NP  ++     L+L V+G+ 
Sbjct: 121 NPAEIAAMLGASCALTISDIPFMGPIAGVRVGYINGSFVINPTEEQRADSDLNLTVAGSY 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DAV+MVE  AN+L E++VLDAI+FGH E + ++E    + + C KE  +      S+ LE
Sbjct: 181 DAVMMVEAGANELPEEIVLDAILFGHAEIRRLVEFQQNIQRTCGKEKQIPAVFKVSEELE 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++    +  L  +    +K+ R   I  +K++ + +F+ E+      EI  +   I+  
Sbjct: 241 EKVRSYAEARLDAATRNSDKFARDADISAIKEETIVHFTEEYPDA-VKEIAQILYRIEKG 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++  +K+R DGR  + VR +S +VG+L R HGS LF RG TQ + V TLG+  DEQ
Sbjct: 300 IVRHMITHEKIRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGSIGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P    FPY
Sbjct: 360 IIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL+DI G
Sbjct: 420 TIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL+QAK+GR  IL+ M + + +
Sbjct: 480 MEDALGDMDFKVAGTSKGITAIQMDIKIAGITRDILASALEQAKQGRAFILSRMLECIDK 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              +L  + PRVE ++I  ++IR+VIG GGKV+R I+++TG  ++I +DG + I S +  
Sbjct: 540 PAEELSPYAPRVETISIDIEKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFITSPNTE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +  AR+MI  I    +V ++Y G+V + + FGAFV     ++GL HISQ++  RV    
Sbjct: 600 AMNLARKMIEDIVREVQVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQIAKHRVENIE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVV  GD + VK+++ D++G+I +S KV+
Sbjct: 660 DVVHIGDQLEVKVVEIDEKGRINVSHKVL 688


>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
           sp. YIT 12067]
          Length = 690

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/684 (45%), Positives = 456/684 (66%), Gaps = 3/684 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  GR L +E G+IA+Q++GAVL  YG+T V+  V   ++ ++G DFFPLTV+++E+ Y
Sbjct: 1   MDLGGRTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGVDFFPLTVDFEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRP+F + Y N+ Q++   +  D +++P +
Sbjct: 61  AVGKIPGGFIKREGRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
            +M+ AS AL +S +PFEGP+ G +V  I+G++++NP +++ +   L+L V+GT+DA+LM
Sbjct: 121 PAMIGASCALSISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQLNLAVAGTKDAILM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQ 246
           VE  AN++SE+ +LDAI FGH   K ++E   K+     KE + +       ++  E+ +
Sbjct: 181 VEAGANEVSEETMLDAIWFGHGVIKQLVEFQEKIVAEIGKEKMEVPFYAPPEEMVAEIEE 240

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
              + L+ +     K  R + +  +K ++   F  ++   N  ++  + + +  K+VR  
Sbjct: 241 YGAQKLKDALMDANKLEREENVAKVKAEIAEVFLEKYPD-NAKDVAYITQKLVKKIVRRT 299

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +   K+R DGR  + VR +S +VGLL R HGSSLF RG TQ + V+ L    + Q +D L
Sbjct: 300 ISVDKIRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQILDGL 359

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +   ++ HYNF P + GE   + +P RREIGHG LA RA+ PV+P    FPY +R+V
Sbjct: 360 GAEETKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALRPVIPSEEDFPYAIRLV 419

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SE+ ES+GSSSM +VC S+L+LMDAGVPI  PVAG+AMGLVKDG+ F IL+DI G ED L
Sbjct: 420 SEVLESNGSSSMGSVCASTLSLMDAGVPIKAPVAGVAMGLVKDGEYFTILTDIQGLEDAL 479

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAGT+ GITA+QMD+KI GI+++I   AL QAKRGR  I+ +M + +SE R +L
Sbjct: 480 GDMDFKVAGTEKGITAIQMDIKIDGINKDIFTQALAQAKRGREFIMGKMMECISEPRKEL 539

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            ++ P++  + + PD+I  VIG GGK+I+ IV++TGAK++IDD G V IA+ +      A
Sbjct: 540 SQYAPKITTIHVDPDKIAKVIGPGGKMIKKIVDETGAKIDIDDTGRVFIAAVNTEAANKA 599

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            EMI  IT   EV  +Y G+V ++M+FGAFV     ++GLVHISQLSTE V K  DVV  
Sbjct: 600 IEMIEGITAEAEVGNVYTGKVTRLMNFGAFVEILPGKEGLVHISQLSTEHVDKVEDVVSV 659

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVV 690
           GD + VK+ + D++G+I LS K V
Sbjct: 660 GDEIVVKVTEIDNKGRINLSRKAV 683


>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
           391-98]
          Length = 710

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/697 (45%), Positives = 475/697 (68%), Gaps = 4/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  KD  DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKD-VDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  I+G++++NP +++ ++  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH E K +I    ++ +   KE + +   +  ++L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKMEVKLYEVDAEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
           E+ + +M ++D+  +  + EK+ R   I+++K+++++++  +       G++  +   I 
Sbjct: 243 EKAVREMAEKDMHTAIQVHEKHAREDAINEVKQRVIAHYEEQEVEAEVLGQVSEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR S+ +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L E+ P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S  
Sbjct: 543 AEPRKELSEYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSID 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  I    +V +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QQMNEKAKKIIEDIVREVQVGEIYLGKVKRIEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVVK GD + VK+++ D +G++ LS KV+ +   +
Sbjct: 663 VEDVVKIGDEISVKVIEIDKQGRVNLSRKVLLKEEQE 699


>gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           J1-023]
          Length = 723

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++  + +   E+ +   GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I    L QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQIXXXXLTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +SE R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 701


>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
           1942]
 gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
           1942]
          Length = 705

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/691 (45%), Positives = 460/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL++    +  K   DFFPLTVN
Sbjct: 4   EKHVFTIDWAGRKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ G  V  ++ Q+++NP +D+ ++  + L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+ +L+AI+FGH E K +I    ++     KE   I   +  ++L
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLYEIDAEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            +++  + +EDL  +  + EK+ R   I+++K  +V+ F  E    +   ++      + 
Sbjct: 243 SDKVKALAEEDLLKAIQVHEKHAREDAINEVKNTVVAKFEEEEHDDDIIKQVKQTLSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + +L+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL+ M   L
Sbjct: 483 QGMEDALGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKKGRMEILSSMLNTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E+R +L ++ P++  MAI PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 GEARKELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 ESNNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 708

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/699 (48%), Positives = 480/699 (68%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT  AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++     A      +  ++ 
Sbjct: 181 AGTDSAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E+   N  EI ++F D
Sbjct: 241 TALVTKIAELAETKLVEAYQITEKMARYDRIHEIAGEVNEALLAENPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  ++P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAIMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+ +M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHMMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK   + T +
Sbjct: 661 EKVSDYLSEGQEVQVKVLEIDRQGRVRLSMKEAVEKTEE 699


>gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
 gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
          Length = 711

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/695 (48%), Positives = 470/695 (67%), Gaps = 2/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LISR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + +  P +V+M+ ASAAL LSGLPF GP+  A+V YIN QYVLNP  DE  Q  LDL V+
Sbjct: 121 NPQVHPDIVAMMGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GTQ+AVLMVE EA  LSE+ +L A++FGH++ + VIE I+ L     K       +   +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  +  +  I +K  R  Q+  +K + ++   +E  + +  EI  +   +
Sbjct: 241 ALISRVAALAEARISDAYRITDKQERYTQVGVIKDETIAALLAEDETLDGSEIGDIVHSL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVRT +L+ + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT  
Sbjct: 301 EKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGLKAKEAIRRIEEITAEIEVGRVYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K +D ++ G  V VK+++ D +G+++LS+K   ++
Sbjct: 661 KVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATES 695


>gi|260887793|ref|ZP_05899056.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|330838689|ref|YP_004413269.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|260862469|gb|EEX76969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|329746453|gb|AEB99809.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
          Length = 689

 Score =  812 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/689 (44%), Positives = 461/689 (66%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + E++  GRPL +E G++A+Q++G+VL  YG+T VL         ++G DFFPLTV++
Sbjct: 1   MQSFEMQVGGRPLIIEQGKMAKQANGSVLVRYGDTAVLVAATASAEPREGIDFFPLTVDF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q+I  V+  D +
Sbjct: 61  EEKMYAAGKIPGGFIKREGRPSESAILCSRLIDRPIRPLFPEGFRNDVQIIATVLCVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           ++P +  M+ AS AL +S +PF GP+ G +V  ++G+ V+NP   +     L+L V+G+ 
Sbjct: 121 NAPEIAGMIGASCALCVSDIPFAGPIAGVKVGRVDGELVINPTEAQRAVSDLNLTVAGSH 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
           DAV+MVE  AN+L E+V+L+AI+FGH E + ++E   ++A  C KE   +       +L+
Sbjct: 181 DAVMMVEAGANELPEEVILEAILFGHKEIQRIVEFQQEIAAACGKEKREVKLFLAPEELD 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +       L  +   P+K  R + I  +  +++ +F +++   N  EI +V   I  +
Sbjct: 241 RAIRDYASSRLDEAVRNPDKLDRDEHIAAIGAEVLEHFLADYPE-NAKEIAAVTHKIVKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++  +K+R DGR  + VR +S +VGLL RTHGS LF RG TQ + + TLG+  DEQ
Sbjct: 300 SVRRMITHEKIRPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVLTITTLGSVGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   Q   ++  YNF   + GE      P RREIGHG LA RA+ P++P   +FPY
Sbjct: 360 IIDGLGPEQSKHYIHQYNFPGYSVGEARPARGPGRREIGHGALAERALLPMIPSLDEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSM +VCGS+L+LM+AGVPI +PV+G+AMGLVKDGD + IL+DI G
Sbjct: 420 TIRLVSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKDGDHYTILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ G+TA+QMD+KI GI+ +I++ AL QAKRGR  IL +M  V+ +
Sbjct: 480 MEDALGDMDFKVAGTEKGVTAIQMDIKIAGITRDILLSALSQAKRGRAFILEKMLAVIDK 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
               L  + PRV +M I  D+IR VIG GGK I+ I+++TGA+++I +DGT+ IA++   
Sbjct: 540 PAADLSPYAPRVTVMKIHVDKIREVIGSGGKTIKKIIDETGAQIDIQEDGTIFIAAADGE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+++I  I    EV  +YKG+V ++M+FGAFV     ++GL HISQL+  RVA+  
Sbjct: 600 GAKKAQQIIEDIVRDVEVGAVYKGRVTRIMNFGAFVEILPGKEGLCHISQLARHRVAQVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVV EGD + VK+++ D +G++ LS KV+
Sbjct: 660 DVVHEGDELEVKVVEIDKQGRVNLSHKVL 688


>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
 gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
          Length = 709

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/700 (48%), Positives = 481/700 (68%), Gaps = 3/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  I++    L LETG I+RQ+D AV+ +YG+TVVL  V     +K GQDFFPLT
Sbjct: 1   MFNKVTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+E E L SR+IDR +RPLF + + NE QV+  V+  
Sbjct: 61  VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E    + +++ ASAA+ LSG+PF GP+  A+V YIN +YVLNP   + ++  LDL V+
Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPFFGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T+ AV+MVE EA +LSE+V+L A++FGH + + VI+ I++LA    K+     + +  +
Sbjct: 181 ATETAVMMVESEAKELSEEVMLGAVVFGHEQMQAVIKMIAELAAEAGKDAWDWVAPEPDT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-SYFSSEHSSWNEGEIVSVFED 297
            L  +++++   D+  +  I  K  R  ++ ++  +++    + E S+    +I     +
Sbjct: 241 ALIAKVAELAAADINAAFQIKAKGARSAKLSEITSRVLGELITEETSTAEANKIKGELFN 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK VR+ +L+ + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 301 LEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+L G  ++ FM+HYN  P ATGE  R+G P RREIGHGRLA+R++   LP  A
Sbjct: 361 RDEQVIDALQGEFKDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRSLIAALPDQA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+   +L+
Sbjct: 421 DFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM +AL QAK GR HIL  M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITSQIMQVALAQAKEGRAHILGIMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +  ++  F PR+ +M I P++IR+VIG GG VIR + E+TG  ++I +DGTVKIA 
Sbjct: 541 AMSSANTEMSAFAPRIIVMKINPEKIRDVIGKGGAVIRALTEETGTSIDITEDGTVKIAC 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  +   A+  I  IT   E+  +Y+G V+K++DFGA V     +DGL+HISQ++ +RV
Sbjct: 601 TSSEQGAEAQRRIAEITAEVEIGNVYEGTVLKLLDFGAIVSLIPGKDGLLHISQIAHQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              SD +KEGD V VK+++ D++G+++LSMK + +     
Sbjct: 661 NAVSDFLKEGDIVKVKVVEADEKGRVRLSMKALIEAPAAE 700


>gi|212634079|ref|YP_002310604.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           piezotolerans WP3]
 gi|226702687|sp|B8CKH8|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans
           WP3]
          Length = 701

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/688 (50%), Positives = 469/688 (68%), Gaps = 2/688 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  ++ + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E +P ++SM+  SAAL +SGLPF GP+  A+V Y NG+YVLNP + +     LDL V+G
Sbjct: 121 PEINPDIISMIGTSAALAISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T+ AVLMVE EA  L E+V+L  +++GH + + VI AIS+L    +K      +     +
Sbjct: 181 TEGAVLMVESEAASLPEEVMLGGVVYGHEQQQVVINAISELKAEASKPAWDWTAPVQDQE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I  K  R  Q+  +K        +E+   +  EI  +   ++
Sbjct: 241 LVAKIKDLAEAGLTEAYQIEVKQDRYTQVGVIKSAAKEALLAENPEADLREIDGLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR+ ++    R+DGR+ + VR ++   G+L RTHGSSLF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRSRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VDS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI+++IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKDIMQIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV  +Y G+VV+++DFGAFV     +DGLVHISQ++ ERVA 
Sbjct: 601 GEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            SD ++ G  V VK+++ D +G+++LSM
Sbjct: 661 VSDYLEVGQEVKVKVMEVDRQGRVRLSM 688


>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
 gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
          Length = 712

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 472/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+WAGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDWAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
 gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
          Length = 717

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/691 (46%), Positives = 469/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M + D+  +  + EK+ R   I  +KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAETDMHSAIQVHEKHAREDAISVVKKRVIEHYEAEEADADTLGQVSEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PVLP    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R++L  + P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNEKAKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 700

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/698 (44%), Positives = 461/698 (66%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++ G++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D
Sbjct: 61  EYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +  P +V+M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ + SL  L VSG
Sbjct: 121 PDVQPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+DA++MVE  A ++ E+ +LDAI++ H   K ++E I  + K        +   +  K 
Sbjct: 181 TKDAIVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEIDKD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I 
Sbjct: 241 LEEKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R ++ ++++R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D
Sbjct: 300 KEQMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 IQILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI
Sbjct: 420 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+ILN+M +V+
Sbjct: 480 QGIEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILNKMLEVI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S 
Sbjct: 540 KEPRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L   E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K
Sbjct: 600 LRSGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVVK GD + VK+ D D  G+I LS K    +  + 
Sbjct: 660 VEDVVKVGDDILVKVTDIDKLGRISLSRKDALPDEEEE 697


>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
 gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
          Length = 712

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   K  + I   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+ +KK+++ ++ +E +  +  G++  +   I 
Sbjct: 243 NQAVREMAEKDMHSAIQVHEKHAREDAINVVKKRVIEHYEAEEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R++L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I  DGTV I+S +
Sbjct: 543 AEPRIELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIKQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
 gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
          Length = 717

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  I+G++V+NP +++ ++  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K ++    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
           E+ + +M ++D+  +  + EK+ R + I+++K+++++++  +       G++  +   I 
Sbjct: 243 EQAVRKMAEKDMHAAIQVHEKHAREEAINEVKQRVIAHYEEQEVEAEVLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR S+ VR ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT +G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTANGVTALQMDIKIDGLSREILEEALQQAKIGRMHILDHMLTAI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S  
Sbjct: 543 AEPRKELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  I    +V +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNEKAKKIIEDIVREVQVGEIYLGKVKRIEKFGAFVGLFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
          Length = 696

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/681 (49%), Positives = 473/681 (69%), Gaps = 2/681 (0%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG
Sbjct: 1   MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ AS
Sbjct: 61  SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQ 194
           AAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLR 253
           LSED +L A++FGH + + VI+ I++L K   K       +  ++ L   ++ + +  L 
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 240

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
            +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +L  + R
Sbjct: 241 DAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPR 300

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           +DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + 
Sbjct: 301 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDT 360

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F+ HYNF P + GE   +G+P RREIGHGRLA+R++  V+P   +FPYT+R+VSEITES+
Sbjct: 361 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVSEITESN 420

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKV
Sbjct: 421 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKV 480

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+
Sbjct: 481 AGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRI 540

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
             + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  I
Sbjct: 541 HTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEI 600

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK
Sbjct: 601 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 660

Query: 674 LLDFDDRGKIKLSMKVVDQNT 694
           +L+ D +G+I+LS+K   + +
Sbjct: 661 VLEVDRQGRIRLSIKEATEQS 681


>gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           S4-171]
          Length = 723

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/702 (44%), Positives = 453/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+D+K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEVEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEVLSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS   A    A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 698

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/690 (49%), Positives = 482/690 (69%), Gaps = 4/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              + ++ G P+ +ETG +ARQ+ G+V+    +TVVL T    +  K  Q FFPLTVNYQ
Sbjct: 4   IKKQFDFGGVPVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+TYA GKIPG + +RE RP+E E L +R+IDR IRPLF K + NE Q++  V+  + E 
Sbjct: 64  EKTYAAGKIPGSFFKREGRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLNPEV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P V +M+  SAAL +SG+PF+GP+  AQV Y +G+Y+LNP   + +   L L V+GT+D
Sbjct: 124 DPEVPAMIGTSAALSISGIPFDGPIGAAQVGYRDGEYLLNPSKTDLETSDLALTVAGTED 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           AVLMVE EAN LSED++L A++FGH + + V++A+ +LA+    E  V +  + + +LE+
Sbjct: 184 AVLMVESEANCLSEDIMLGAVMFGHEKMQAVVQAVKELAEEVGTERWVFEEAEANVELEQ 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--NEGEIVSVFEDIQA 300
            ++   ++DL  +  I +K  R ++I +++  +V   ++          E+ SVF  ++ 
Sbjct: 244 AVASAAQQDLGEAYTIADKMDRYQRIGEIRDAVVEQLAAAEGEEGPEADEVKSVFAKLEK 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR+ +L  + R+DGRD+ TVR IS + G+L RTHGS+LF RG+TQA+VV TLGT  D 
Sbjct: 304 NIVRSRILAGEKRIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTTLGTERDA 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+G  +++F+ HYNF P   GE   +G+P RREIGHG+LA+R +  V+P    FP
Sbjct: 364 QLIDDLAGEYKDNFLFHYNFPPYCVGETGFIGSPKRREIGHGKLAKRGVQAVMPAQDDFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R VSEITES+GSSSMA+VCGSSLA+MDAGVP+  PVAGIAMGL+K+GD F +L+DI 
Sbjct: 424 YTIRAVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGDQFAVLTDIL 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+  IM  AL++AK GRLHIL EM+K L 
Sbjct: 484 GDEDHLGDMDFKVAGTDGGVTALQMDIKIQGITREIMAQALEEAKAGRLHILGEMAKELD 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L +  PR   + I PD+I +VIG GG  IRGI E+TGA V+I+DDGT+KIAS   
Sbjct: 544 KPREELSQHAPRYITVKIHPDKIGDVIGKGGATIRGITEETGASVDIEDDGTIKIASVKA 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + E A++M+  +T   EV KIY+G+VV + +FGAFV+    +DGLVHISQ++ ERV   
Sbjct: 604 EDGERAKKMVEELTAEIEVGKIYEGKVVGIKEFGAFVNILPGKDGLVHISQIAQERVENV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +D + EG  V VK+L+ D +G+++LSMK V
Sbjct: 664 TDHLSEGQEVRVKVLEVDRQGRVRLSMKEV 693


>gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
 gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC
           14580]
 gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580]
 gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
          Length = 705

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/691 (45%), Positives = 461/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKHVFSIDWAGRKLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPK-TVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ G  V  ++ ++++NP L++ ++  + L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDNKFIINPTLEQLEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+++L+AI+FGH E K +I    ++     KE   I   +  S L
Sbjct: 183 KDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEITLYEIDSDL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVFEDIQ 299
           +E++  M + +L  +  + EK+ R   I ++K ++++ F  E        ++  +   + 
Sbjct: 243 KEKVRGMAESNLLKAIQVHEKHAREDAISEVKNEVLAKFEEEEHDEETLKQVKDILSQLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KNEVRRLITEEKVRPDGRAVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ P++P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPIVPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK GD++ +L+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDNYTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL  M   L
Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILESMLSTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +ESR +L  + P++  M+I PD+IR+VIG  GK I  I+E TG K++I+ DGT+ I+S+ 
Sbjct: 543 AESRKELSPYAPKILTMSINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  + A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 ESMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVKIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1357]
          Length = 696

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/681 (49%), Positives = 472/681 (69%), Gaps = 2/681 (0%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG
Sbjct: 1   MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ AS
Sbjct: 61  SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQ 194
           AAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLR 253
           LSED +L A++FGH + + VI+ I++L K   K       +  ++ L   ++ + +  L 
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 240

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
            +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +L  + R
Sbjct: 241 DAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPR 300

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           +DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + 
Sbjct: 301 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDT 360

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+
Sbjct: 361 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESN 420

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKV
Sbjct: 421 GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKV 480

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+
Sbjct: 481 AGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRI 540

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
             + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  I
Sbjct: 541 HTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEI 600

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK
Sbjct: 601 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 660

Query: 674 LLDFDDRGKIKLSMKVVDQNT 694
           +L+ D +G+I+LS+K   + +
Sbjct: 661 VLEVDRQGRIRLSIKEATEQS 681


>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum
           GMI1000]
 gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum GMI1000]
          Length = 717

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/697 (49%), Positives = 485/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EANQLSE+V+L A+++GH + +  I AI  L +   K      +     
Sbjct: 181 GTERAVLMVESEANQLSEEVMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQMVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 722

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/697 (49%), Positives = 486/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VA+SAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVASSAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI  L +   K      +     
Sbjct: 181 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K +    ++     +  E+ ++  ++
Sbjct: 241 ALFAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAEKLAAAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +LD + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILDGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+LSG  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALSGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
 gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
          Length = 723

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/702 (44%), Positives = 452/702 (64%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PF+GP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTHDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+D+K++++  + +   E+ +    E+  + 
Sbjct: 240 ELEAEVKVASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEVLSEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VGLL R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  +
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHL 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  +S  R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++I+ DGTV I
Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS        A  +I  I    +V ++Y G+V ++  FGAFV      DGLVHIS+L+ E
Sbjct: 600 ASQDQTMNRKAIAIIEDIVREVQVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  D++K GD V VK+++ D +G++ LS KV+ +   +P
Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKVLLEKKEQP 701


>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
           naphthalenivorans CJ2]
 gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
          Length = 703

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/698 (48%), Positives = 475/698 (68%), Gaps = 2/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG +ARQ+ GAVL     TVVLATVV     K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A+SAAL +SG+PF GP+  A+V YING+YVLNP   + Q S +DL V+
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L AI+FGH +    I AI +L +   K      +    +
Sbjct: 183 GTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++  + +E L  +  I  K  R      +         +E   ++   +  +  DI
Sbjct: 243 VLIAKVVALAEEKLVAAYQIRNKQARTHATRQVTTWTKMGLKAEGVEFDGVAVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L    R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EAKIVRSQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+LSG   + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPSKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + ++  ++ +F PR+ +M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IAS+
Sbjct: 543 MGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIASN 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 DSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLMPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K +D + EG  + VK+L+ D++G++KLSMK +     +
Sbjct: 663 KVTDYLSEGQIIKVKVLETDEKGRVKLSMKALLDRPSQ 700


>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
 gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
          Length = 712

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/691 (46%), Positives = 471/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVSEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|257096712|sp|B0K9P4|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 700

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/698 (44%), Positives = 461/698 (66%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++ G++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D
Sbjct: 61  EYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +  P +V+M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ + SL  L VSG
Sbjct: 121 PDVQPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+DA++MVE  A ++ E+ +LDAI++ H   K ++E I  + K        +   +  K 
Sbjct: 181 TKDAIVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEIDKD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I 
Sbjct: 241 LEEKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R ++ ++++R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D
Sbjct: 300 KEQMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 IQILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI
Sbjct: 420 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+
Sbjct: 480 QGIEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S 
Sbjct: 540 KEPRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L   E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K
Sbjct: 600 LRSGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVVK GD + VK+ D D  G+I LS K    +  + 
Sbjct: 660 VEDVVKVGDDILVKVTDIDKLGRISLSRKDALPDEEEE 697


>gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
 gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
          Length = 775

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/697 (47%), Positives = 477/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG +ARQ++GAVL     TV+LATVV  +S K GQDFFPLT
Sbjct: 3   LFNKVTKSFQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+  SAAL +SG+PF GP+  A+V YINGQYVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GTQ AVLMVE EA QLSE+++L  ++FGH +    I AI  L +   K      +  +  
Sbjct: 183 GTQAAVLMVESEAQQLSEEIMLGGVVFGHEQAGIAINAIHDLVRDAGKPVWDWQAPAEDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               ++  + +E LR    I  K  R + + +    +++        ++ G++  +   I
Sbjct: 243 AFVAKVKGLAEEKLRAVYQIRSKQARTQALREANATVMASLKESGEPFDAGKVNDLLFSI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT  
Sbjct: 303 ESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F PR+  + I P++IR+VIG GG VIRG+ E+TG  +NID+DGT+ IAS+
Sbjct: 543 MGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + E A++ I  IT   E+ K+Y+G V K++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 DPEKAELAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           K +D + EG  V VK+L+ D++G++KLSMK + +   
Sbjct: 663 KVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERPA 699


>gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           202]
 gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           202]
          Length = 711

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/695 (47%), Positives = 478/695 (68%), Gaps = 2/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+Y
Sbjct: 3   PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + +
Sbjct: 63  QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + E +   LDL V+GT 
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLDLVVAGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            AVLMVE EA+ L+E+ +L A++FGH + + VIE I +  K   K      + + +  L 
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++  + +  +  +  I EK  R +QID +K ++++  ++E  + +EG+I+ +   ++++
Sbjct: 243 NKVKALAEARIGDAYRITEKQARYEQIDAIKAEVIATLTAEDETVSEGKIIDIITALESQ 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ ++  + R+DGR  +TVR +    G+L RTHGS+LF RG+TQA+ V TLGT  D Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +  
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA++   
Sbjct: 543 PRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +   E I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++  RV + +
Sbjct: 603 AAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVT 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           D +  G  V VK+++ D +G+I+L+MK ++    +
Sbjct: 663 DYLSVGQEVQVKVVEIDRQGRIRLTMKDLNNEATE 697


>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
 gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
          Length = 747

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/697 (47%), Positives = 480/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   IFNKITKSFQWGDKTVIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH +    I AI +L +   K      +    +
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGNVAINAIHELVREAGKPVWDWKAPAKDE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++ + ++ LR +  I  K  R     +    +++        ++  ++  +  DI
Sbjct: 243 SLIAKVTALAEDKLRAAYQIRNKQARTHACREAYAVVMADLKEAGVEFDSVKVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR+ +L  + R+DGRD+ TVR I  +  +L R HGSSLF RG+TQA+VV TLGT  
Sbjct: 303 EARIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + FM+HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEYEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARIHILGKMQDA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   E+ K+Y+G V K++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 DAAKADEAKRRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           K SD + EG  V VK+++ D++G++KLSMK + +   
Sbjct: 663 KVSDYLTEGQIVKVKVMETDEKGRVKLSMKALAERPA 699


>gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
          Length = 710

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/691 (48%), Positives = 471/691 (68%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K       +  ++
Sbjct: 181 GTKGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + + GEI  +   +
Sbjct: 241 ALRSRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 691


>gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp.
           Marseille]
 gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 711

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/706 (50%), Positives = 486/706 (68%), Gaps = 9/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+II+VM  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E  P + +M+ ASAAL ++G+PF GPV  A+V YI+GQYVLNP   +  +  LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLAKSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH + K VI+AI  L +   K  +    +    
Sbjct: 181 GTEIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRDGGKPEVQWSPAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
            L   ++   +  LR +    +K  R  ++ D   ++ +  ++E +S      +  E+ +
Sbjct: 241 ALISRVAHFAEAKLRAAYQTKDKQARTTKLKDAFAEVNNELAAEAASIGAAAPDTAEVGN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAAL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G  F
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRVHILG 540

Query: 534 EMSKVLS-ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           EM K +   +  +L +F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G 
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS   A  + A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ+
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
           + ERV   +D ++EG  V VK+L+ DDRG++KLSMK  V +   +P
Sbjct: 661 ANERVNAVADYLQEGQQVRVKVLETDDRGRLKLSMKAAVAEENPEP 706


>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
 gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
          Length = 720

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 483/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +     
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 743

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/690 (48%), Positives = 478/690 (69%), Gaps = 2/690 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVN
Sbjct: 36  NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 95

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + 
Sbjct: 96  YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 155

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT 181
           + SP +V+M+ ASAAL LSG+PF GP+  A+V +INGQ+VLNP + ++ Q  LDL V+GT
Sbjct: 156 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 215

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             AVLMVE EA+ L+E+ +L A+++GH + + VIEAI +L     K      + + +  L
Sbjct: 216 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTAL 275

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+I+ +F  +++
Sbjct: 276 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITAEDEEVSEGKIIDIFTALES 335

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D 
Sbjct: 336 QIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDA 395

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FP
Sbjct: 396 QIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFP 455

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 456 YVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDIL 515

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + + 
Sbjct: 516 GDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIP 575

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+   
Sbjct: 576 APRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDK 635

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++     I  IT   EV   YKG+V+++ DFGAFV   G ++GLVHISQ++ ERV K 
Sbjct: 636 NAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAEERVEKV 695

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SD ++ G  V VK+++ D +G+I+L+MK +
Sbjct: 696 SDYLQVGQEVMVKVVEIDRQGRIRLTMKDL 725


>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 720

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 483/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +     
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVDADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae L20]
 gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|187470959|sp|A3MZU3|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096735|sp|B3GXC1|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 715

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/695 (48%), Positives = 476/695 (68%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  +
Sbjct: 61  DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E +   LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ LSE+ +L A++FGH + + VIE I +  K   K      + + +  
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   ++
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + +VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++ 
Sbjct: 541 PAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +A    I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV +
Sbjct: 601 NNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVER 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +D +  G  V VK+++ D + +I+L+MK ++ +T
Sbjct: 661 VADYLSVGQEVTVKVVEIDRQNRIRLTMKDLNNDT 695


>gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
 gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
          Length = 720

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/697 (47%), Positives = 479/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY +NP   + + S LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA+QLSE+++L  +++GH + + VI AI +L K   K      +    +
Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHQQMQAVINAIHELVKDAGKPDWDWQAPAKDE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKM-----VSYFSSEHSSWNEGEIVS 293
                     +E L  +  I EK  R  ++ ++   +      +      +  +   + +
Sbjct: 241 ALIAAVTAAAQEGLNAAYQIREKQARTTKLREVSADVSAKLAAAAAEKGEALPDAVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   +++ +VR  +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 IMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FMMHYN  P ATGE  R+G P RREIGHGRLA+R++ P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPLL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ DG  F
Sbjct: 421 PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A+ + A+  I  +T   EV +IY+G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQIYEGAVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697


>gi|293391608|ref|ZP_06635942.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952142|gb|EFE02261.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 743

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/690 (48%), Positives = 478/690 (69%), Gaps = 2/690 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVN
Sbjct: 36  NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 95

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + 
Sbjct: 96  YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 155

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT 181
           + SP +V+M+ ASAAL LSG+PF GP+  A+V +INGQ+VLNP + ++ Q  LDL V+GT
Sbjct: 156 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 215

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             AVLMVE EA+ L+E+ +L A+++GH + + VIEAI +L     K      + + +  L
Sbjct: 216 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWDWVAPEPNTAL 275

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+I+ +F  +++
Sbjct: 276 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITAEDEEISEGKIIDIFTALES 335

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D 
Sbjct: 336 QIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDA 395

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FP
Sbjct: 396 QIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFP 455

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 456 YVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDIL 515

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + + 
Sbjct: 516 GDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIP 575

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+   
Sbjct: 576 APRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDK 635

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++     I  IT   EV   YKG+V+++ DFGAFV   G ++GLVHISQ++ ERV K 
Sbjct: 636 NAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHISQIAEERVEKV 695

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SD ++ G  V VK+++ D +G+I+L+MK +
Sbjct: 696 SDYLQVGQEVMVKVVEIDRQGRIRLTMKDL 725


>gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 717

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/702 (50%), Positives = 481/702 (68%), Gaps = 7/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVSKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+E E L SR+IDR +RPLF + Y NE Q+II+V+  
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPVRPLFPEGYMNEVQIIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GPV  A+V YINGQYVLNP   + + S LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGVPFSGPVGAARVGYINGQYVLNPTTTQLKSSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+V+L A++FGH + K VI+AI +L +   K  I    +    
Sbjct: 181 GTEAAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHELVRDGGKPEIEWAPAAKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-----SWNEGEIVS 293
            L   ++   +  LR +    +K  R  ++     +++    +E +     + +  ++ +
Sbjct: 241 ALISRVAHFGEAKLRDAYQTKDKQARTAKLKTATSEVMEALKAEAASIAGVAPDSADVNN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++AK+VR+ +L+ + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D+L G   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+   L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAAL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+KDG  F
Sbjct: 421 PPVEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK GRLHIL+
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTAKGITALQMDIKIQGITKEIMQVALAQAKEGRLHILD 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +     +L  F PR+  + I P++IR+VIG GG VIR + E+TG +++I D+G V
Sbjct: 541 KMQQAVPIGHTELSNFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   +    A+  I  +T   EV KIY+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDASAGLEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            ERV   +D +KEG  V VK+L+ DDRG++KLSMK      G
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAASEEG 702


>gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase/polyadenylase [Shewanella sediminis
           HAW-EB3]
 gi|257096709|sp|A8FYR5|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 704

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/687 (49%), Positives = 470/687 (68%), Gaps = 2/687 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVN
Sbjct: 5   NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVN 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D 
Sbjct: 65  YQEKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           E +P V+SM+  SAAL +SGLPF GP+  A+V Y +G+YVLNP + +     LDL V+GT
Sbjct: 125 EINPDVISMIGTSAALAISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLDLIVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240
           Q AVLMVE EA  L E+V+L  +++GH++ + VI AI++L    +K      +    + L
Sbjct: 185 QGAVLMVESEAAALPEEVMLGGVVYGHDQQQVVISAINELKAEASKPAWDWTAPVQDADL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++  + + ++  +  I  K  R  Q+  +K        +E+   +  EI  +   ++ 
Sbjct: 245 VAKIKDLAEAEMAAAYQIEVKQDRYTQVGVVKSAAKEALLAENPEADLREIDGLLGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +VVR+ ++    R+DGR+ + VR ++   G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 305 QVVRSRIIAGNPRIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VDS+ G   N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FP
Sbjct: 365 QKVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 425 YSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + + 
Sbjct: 485 GDEDHLGDMDFKVAGTRDGITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMDQAIG 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R  + +  PR+  + I P++IR+VIG GG  IR + E+TG  + ++DDGTVKIAS++ 
Sbjct: 545 EHRDDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASANG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A   I  IT   EV  IY G+VV+++DFGAFV     +DGLVHISQ++ ERVA  
Sbjct: 605 DATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           SD ++ G  V VK+++ D +G+++LSM
Sbjct: 665 SDYLQVGQEVKVKVMEVDRQGRVRLSM 691


>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 735

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/689 (47%), Positives = 464/689 (67%), Gaps = 4/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V   E E AGR   LETG++ARQ+  AV   YGETVVLATV   +  K+  DFFPLTVNY
Sbjct: 2   VVRHEFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q++  V+  D +
Sbjct: 61  EERLYAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            +P + +M+  SA+L +S +PF GP+ G  V  ++GQ+V+NP +++ ++  L L V+GT+
Sbjct: 121 CAPEIAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DA++MVE  ANQ+ E++VL+AI++GH   + + + I+  A+    +   ++  K   +LE
Sbjct: 181 DAIVMVEAGANQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELE 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +     + +  +   P+K  R + + +L  +++ +F        E +I  V   I  +
Sbjct: 241 AAVRAYATDKVSAAVRNPDKLAREEALANLNAEVLEHFKETFPE-KEADIAEVMHTILKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR  +L + +R DGR  + +R IS +VGLL RTHGS+LF RG TQA+ V TLG+  DEQ
Sbjct: 300 RVREAILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   + N +M HYNF P + GE   + APSRR+IGHG L  RA+ PV+P   +FPY
Sbjct: 360 LLDGLELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEI ES+GS+S A++CGS++ALMDAGVPI  PVAGIAMGLVK+GD   ILSDI G
Sbjct: 420 AIRVVSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT+ G+TA+QMD+KI GI  +I+  AL+QA+ GR++IL++M + +SE
Sbjct: 480 IEDHLGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L +F PRV  + I PD+IR+VIG GG+VI  I+E+TG K++I+ DG V I S+   
Sbjct: 540 PRADLSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +   AREM+ +I    EV   Y G+V +V  FGAFV     ++GLVHISQL   RVAK  
Sbjct: 600 QANRAREMVENIVRDVEVGATYTGKVTRVEKFGAFVEILPGKEGLVHISQLDLNRVAKVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV + GDT+ VK+ + D++G+I LS K V
Sbjct: 660 DVCQVGDTLTVKVTEIDNQGRINLSRKEV 688


>gi|89095210|ref|ZP_01168133.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
           MED92]
 gi|89080507|gb|EAR59756.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
           MED92]
          Length = 701

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 485/697 (69%), Gaps = 4/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V T   ++ G+ + +ETGR+ARQ+ G+VL   G   VL TVV  +  K GQDFFPL+
Sbjct: 1   MFQVTTKTFQFGGQEVTIETGRVARQATGSVLVKMGGNEVLCTVVGAKEAKAGQDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YAVG+IPGG+ +RE+RP+E E L SR+IDR IRPLF K Y NE QV+  V+  
Sbjct: 61  VHYQEKYYAVGRIPGGFFKREARPSEKETLTSRLIDRPIRPLFPKGYMNEVQVVCTVVSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQ-GSLDLFV 178
           D ++ P + +M+  SAAL +SG+PF+GP+  A+V +  +  Y+LNP  ++ Q   LD+ V
Sbjct: 121 DKKNDPDIAAMIGTSAALAISGIPFQGPIGAARVGFTEDAGYLLNPSFEQLQTSELDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT DAVLMVE EA +LSED +L A++F H E + VI A+++LA    KE  V ++    
Sbjct: 181 AGTADAVLMVESEAQELSEDEMLGAVLFAHQEMQVVINAVNELAAEAGKEAWVWEAPAKD 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFE 296
             L  ++   + E +  +  + +K  R   + +L+ K V   +  E    + G++  +  
Sbjct: 241 EALIAKVRAEVGEGITAAYQVADKMQRQNALAELRAKAVEALAGEEEGQPSAGDVSGIVS 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++VR  +++ + R+DGRD++TVR I  Q+ +LQ THGS+LF RG+TQAI   TLGT
Sbjct: 301 SLEKEIVRGRIVNGEPRIDGRDTKTVRGIDVQIDVLQGTHGSALFTRGETQAIATCTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D+Q +D++ G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP  
Sbjct: 361 ARDQQIIDAIEGERKDPFMLHYNFPPYSVGECGRMGGAGRREIGHGRLARRGVAAVLPTQ 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGLVK+GD F +L
Sbjct: 421 EEFPYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEGDKFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+E IM +AL+QA   R+HIL EM+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTERGVTALQMDIKITGITEEIMDIALEQAYEARVHILKEMA 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+  +R +L +  P +  + I P++IR+VIG GG  IR + E+TGA ++I+DDGTV++ 
Sbjct: 541 TVIGYARPELPDNAPALTQLKINPEKIRDVIGKGGATIRALTEETGASIDIEDDGTVRVY 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A  +AA + I  IT   E+ +IYKG+VV++ DFGAFV+    +DGLVHISQ++ +R
Sbjct: 601 AEDKAAAKAATDKIIEITAEAEIGQIYKGKVVRIEDFGAFVNILPGKDGLVHISQIANKR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V K +D ++    V VK+LD D RG+IKLSMK ++ +
Sbjct: 661 VEKVTDYIQMDQEVTVKVLDVDQRGRIKLSMKDIEAD 697


>gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans
           C-125]
 gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125]
          Length = 704

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/696 (47%), Positives = 461/696 (66%), Gaps = 4/696 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +ETG++A+Q++GAVL  YG+T VL+T    +  KD   FFPLTVN
Sbjct: 4   ERHEFSIDWAGRKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YA GKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QVI  VM  D 
Sbjct: 63  YEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +MV +S AL +S +PFEGP+ G  V  I+GQ+V+NP  D+ ++  + L V+GT
Sbjct: 123 DCSSEMAAMVGSSLALSISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A ++ EDV+L+AI+FGHNE K +IE   K+A    K    +  K     L
Sbjct: 183 KDAINMVEAGAEEVPEDVMLEAIMFGHNEIKRLIEFQEKIAAEVGKSKTDVVLKQVDPML 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E+E+    +EDL+ +  +PEK+ R   I+ +  K++  +  ++      E+  +   I  
Sbjct: 243 EQEVRVKAEEDLKQAVQVPEKHARQDAIEAVMDKVLETY-EDNEDVPLSEVNEILHKIVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++  +K+R DGR+ + +R +S+QVG+L RTHGS LF RG TQA+ + TLG   D 
Sbjct: 302 EEVRRLITVEKIRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+ PV+P    FP
Sbjct: 362 QILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPSEQDFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK  +   +L+DI 
Sbjct: 422 YTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHVSVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QA++GR+ IL+ M + +S
Sbjct: 482 GMEDALGDMDFKVAGTRKGVTALQMDIKISGIDRAILEQALEQARKGRMIILDNMLEAIS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESR +L  + P++  M I PD+IR+VIG  GK+I  I+E TG K++I+ DGT+ I+S+  
Sbjct: 542 ESRSELSPYAPKILTMTINPDKIRDVIGPSGKMINKIIEDTGVKIDIEQDGTIYISSADT 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                ARE+I  I    EV ++Y G V ++  FGAFV     +DGLVHISQL+ ERV K 
Sbjct: 602 NMNNKAREIIEDIVREVEVGQMYLGTVKRIEKFGAFVELFKGKDGLVHISQLAEERVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            DVVK GD + VK+++ D++G++ LS K V +   K
Sbjct: 662 EDVVKIGDEILVKVMEIDNQGRVNLSRKAVLKEQKK 697


>gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
           2912]
 gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
           2912]
          Length = 727

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/691 (47%), Positives = 460/691 (66%), Gaps = 4/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H  E    GR L LETG++A+Q+  AV   YG+TVVLATV   +  KD  DFFPLTVNY
Sbjct: 2   PHIFETVLGGRRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKD-LDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QV+  V+  D +
Sbjct: 61  EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P +  M+  SAAL +S +PF+GP+ G  V  ++GQ+V+NP + + ++  + L V+G++
Sbjct: 121 CPPEIAGMIGTSAALTISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDMHLVVAGSR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
            AV+MVE  AN++ E  +LDAI+FGH + +P+I+   ++ +   +E IV +  +   ++ 
Sbjct: 181 SAVVMVEAGANEVPESEMLDAIMFGHEQLQPLIDLQERMRQEIGQEKIVPELHRPQEEIV 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + + +   E L+ +   PEK  R   I  ++++   +F+ +       +I  V  DI  +
Sbjct: 241 QAVREFATEKLKTAIRTPEKLAREDAIRAVEEETQEHFAEQFPEG-AADIAEVLHDILKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR+ +L++ +R DGR  + +R IS +VGLL RTHGS LF RG TQA+ V TLG   D Q
Sbjct: 300 EVRSAILNEGMRPDGRALDEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF P + GE   + APSRR+IGHG L  RA+ PV+P   +FPY
Sbjct: 360 ILDGLDLEESKRFMHHYNFPPFSVGEARPIRAPSRRDIGHGALGERALEPVIPSEEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GS+S A++CGS+LALMDAGVPI  PVAG+AMGLVK+GD   IL+DI G
Sbjct: 420 TIRLVSEVLESNGSTSQASICGSTLALMDAGVPIKAPVAGVAMGLVKEGDRVAILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT +G+TA+QMD+KI G++ +I+  AL+QA RGR+ IL +M +V+ +
Sbjct: 480 MEDHLGDMDFKVAGTAAGVTALQMDIKIKGLTRDILASALEQAHRGRMFILGKMLEVIQQ 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL  + PR+  M I PD+IR VIG GG+VI  I++ TG K++I+ DG + IA+    
Sbjct: 540 PRQQLSPYAPRIITMRIHPDKIREVIGPGGRVINKIIDDTGVKIDIEQDGRIFIAAVDQE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E AR+MI  I    EV   Y G+V +V  +GAFV     ++GLVHISQL+ ERV +T 
Sbjct: 600 AGERARKMIEGIVAEVEVGHTYHGRVTRVEKYGAFVEILPGKEGLVHISQLADERVGRTE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           DVV+ GD + VK+ + D +G+I LS + V Q
Sbjct: 660 DVVRVGDEIDVKVTEIDSQGRINLSRREVLQ 690


>gi|254456606|ref|ZP_05070035.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083608|gb|EDZ61034.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 690

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/693 (54%), Positives = 509/693 (73%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V+  EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV  + +    D+FPL+
Sbjct: 1   MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   +KNE Q++  V+ +
Sbjct: 61  VNYQEKYYAGGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDAFKNEVQLLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D E+ P ++++ A+SAAL +SG+PF GPV  ++V +++G+Y+LNP   E +  SLDL V+
Sbjct: 121 DKENQPDILAITASSAALAISGMPFMGPVGASRVGFVDGKYILNPSKAELENSSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EAN L+E+ +L+A+ FGH    PVIE + +LAK C K    ++ KD S+
Sbjct: 181 GTKDAVLMVESEANGLTEEEMLNAVKFGHEGFVPVIEMVEELAKECRKPEWTVEKKDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ +   +DL  +    +K  R  QI ++  K       E+ ++++ ++ S  ++++
Sbjct: 241 VKQKLEETFTKDLTKAFATRDKQDRSNQISEITDKAK-KLFEENENYSDLDVNSELKNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L  K R+DGR    VR I  +VG+L RTHGS+LF RG+TQAIVV TLGT +D
Sbjct: 300 KKIVRTDILKNKNRIDGRGLSDVRPIECEVGVLPRTHGSALFTRGETQAIVVATLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ ++SL G QR  FM+HYNF P + GE  R+G   RREIGHG+LA RAI+  LP    F
Sbjct: 360 EQRIESLDGLQRERFMLHYNFPPFSVGETGRIG-TGRREIGHGKLAWRAINSSLPSKEAF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMATVCGTSLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+  IM  AL QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALSQAKDGRVHILGEMNKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S SR  +G+ TP++E + +    I  VIG GG  IR IVE++GAKV+++D+G V +A+  
Sbjct: 539 SASREDVGKHTPKMEQVNVDKKDIAAVIGKGGATIREIVEKSGAKVDVNDEGVVTVAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +MI+ IT   E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+ +RVAK
Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELADKRVAK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +DVVKEGD V VK++ FD RGK+KLSMK   +
Sbjct: 659 VTDVVKEGDEVKVKVIGFD-RGKVKLSMKQAAE 690


>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
 gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
          Length = 717

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/691 (46%), Positives = 469/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M + D+  +  + EK+ R   I+ +KK+++ ++ ++    +  G++  +   I 
Sbjct: 243 NQAVREMAETDMHSAIQVHEKHAREDAINVVKKRVIEHYEAQEVDADTLGQVSEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PVLP    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R++L  + P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRIELSAYAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNEKAKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
 gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
          Length = 720

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/697 (47%), Positives = 480/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAV+ +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V YI+GQY LNP   + + S LDL V+
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYALNPTASQLKSSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSE+++L  +++GH + + VI AI +L K   K      +    +
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPEWDWQAPAKDE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-----NEGEIVS 293
                     +E L  +  I EK  R  ++ ++   + +  ++  +       +   + +
Sbjct: 241 ALIAAVTAAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKGESAPDAVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   +++ +VR  +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 IMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FMMHYN  P ATGE  R+G P RREIGHGRLA+R++ P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPLL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ DG  F
Sbjct: 421 PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILT 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A+ + A+  I  +T   EV ++Y+G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQMYEGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697


>gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|226702591|sp|B0BUD5|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 715

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/695 (48%), Positives = 476/695 (68%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  +
Sbjct: 61  DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E +   LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ LSE+ +L A++FGH + + VIE I +  K   K      + + +  
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   ++
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + +VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++ 
Sbjct: 541 PAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +A    I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV +
Sbjct: 601 NNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVER 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +D +  G  V VK+++ D + +I+L+MK ++ +T
Sbjct: 661 VADYLSVGQEVTVKVVEIDRQNRIRLTMKDLNNDT 695


>gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 708

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/698 (48%), Positives = 480/698 (68%), Gaps = 2/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  +GQDFFPLTV
Sbjct: 1   MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
              SP +V+M+  SAAL +SG+PF GP+  A+V YIN Q+VLNP  ++ ++  LDL V+G
Sbjct: 121 PAVSPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T+ AVLMVE EA++L+E+ +L A++FGH++ + VI+AI++ A   A       +  + + 
Sbjct: 181 TEAAVLMVESEADRLTEEQMLQAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPAENTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D++
Sbjct: 241 LKNKIAELAEAKLVEAYQITEKMARYDRIHEIADEVNEVLLAEDVEANTKEIHTIFHDLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D
Sbjct: 301 KTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +F
Sbjct: 361 AQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   +
Sbjct: 481 LGDEDHLGDMDFKVAGTEDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  + EF PR+  M I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++ 
Sbjct: 541 NTPREDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATE 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV   G ++GLVHISQ+S +RV K
Sbjct: 601 GTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            SD ++ G  V VK+L+ D +G+I+LSMK   +     
Sbjct: 661 VSDYLQMGQEVKVKVLEIDRQGRIRLSMKEAVETPAAE 698


>gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
 gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
          Length = 712

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/691 (46%), Positives = 470/691 (68%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ET ++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +    L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            + + +M ++D+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMSEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTIGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVL 693


>gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp.
           X514]
 gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X513]
 gi|257096713|sp|B0K1D0|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X514]
 gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X513]
          Length = 700

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/698 (44%), Positives = 462/698 (66%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++ G++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ QVI  V+  D
Sbjct: 61  EYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +  P +V+M+ +S AL +S +PF+GP     V  ++GQ+++NP  ++ + SL  L VSG
Sbjct: 121 PDVQPEIVAMIGSSVALSISDIPFDGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DA++MVE  A ++ E+ +LDAI++ H   K ++E I  + K        +   +   +
Sbjct: 181 TKDAIVMVEAGAKEVPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEIDKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     E +  +    EK  R   +D ++++++ +F  E+   N  +I  V  +I 
Sbjct: 241 LEEKVRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEEYPD-NLADIDEVLYNIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R ++ ++++R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D
Sbjct: 300 KEQMRKMITEERIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 IQILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI
Sbjct: 420 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A+RGRL+IL++M +V+
Sbjct: 480 QGIEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R QL  + PRV  M + P++IR +IG GGK I  I+ +TG K++I++DG + I +S 
Sbjct: 540 KEPRKQLSVYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVKIDIEEDGRLYITASD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L   E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K
Sbjct: 600 LRSGERAKQMIEAITKDIAVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVVK GD + VK+ D D  G+I LS K    +  + 
Sbjct: 660 VEDVVKVGDDILVKVTDIDKLGRISLSRKDALPDEEEE 697


>gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 715

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/695 (48%), Positives = 476/695 (68%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  +
Sbjct: 61  DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E +   LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ LSE+ +L A++FGH + + VIE I +  K   K      + + +  
Sbjct: 181 TNKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   ++
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTTQDETISEGAIIDIITALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + +VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++ 
Sbjct: 541 PAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +A    I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV +
Sbjct: 601 NNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVER 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +D +  G  V VK+++ D + +I+L+MK ++ +T
Sbjct: 661 VADYLSVGQEVTVKVVEIDRQNRIRLTMKDLNNDT 695


>gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 715

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/695 (48%), Positives = 476/695 (68%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  +
Sbjct: 61  DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E +   LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ LSE+ +L A++FGH + + VIE I +  K   K      + + +  
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  +  +  I EK  R +QID +K  +++  +++  + +EG I+ +   ++
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDETVSEGAIIDIITALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + +VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VD L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQIVDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++ 
Sbjct: 541 PAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +A    I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV +
Sbjct: 601 NNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVER 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +D +  G  V VK+++ D + +I+L+MK ++ +T
Sbjct: 661 VADYLSVGQEVTVKVVEIDRQNRIRLTMKDLNNDT 695


>gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase/polyadenylase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|187470961|sp|A0KND9|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 712

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/692 (48%), Positives = 474/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+ +  +T V  TVV  +    G+DFFPLTV
Sbjct: 1   MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA G+IPGG+ RRE RP+E E LISR+IDR IRPLF + + NE QV+  VM  +
Sbjct: 61  NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
              SP +V+M+ ASAAL +SG+PF GP+  A+V Y+NGQYVLNP   E  Q  LDL V+G
Sbjct: 121 PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T +AVLMVE EA  LSE+V+L A++FGH + + VI AI++ A     +P    +   ++ 
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++   +L  +  I EK VR + I  +K ++V    +     +  +I   F  ++
Sbjct: 241 LKAKVAELATAELGEAYRITEKAVRYETIGAIKARVVEQVIASGVEEDAKKIGEEFHSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGRD E +R +S   G+L R HGS+LF RG+TQA+VV TLGT  D
Sbjct: 301 SRIVRGRVVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + FM+HYNF P   GE   MG+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA+  RLHIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R ++ +F PR+  + I P++I++VIG GG VIR + E+TG  + +DDDGTV+IA+  
Sbjct: 541 QAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I +IT   EVN+IY+G+VV++ DFGAFV+    +DGLVHISQ++  RV  
Sbjct: 601 GDAAKEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            +D +K GD V VK+L+ D +G+++LS+K  +
Sbjct: 661 VADYLKIGDVVKVKVLEVDRQGRVRLSIKEAN 692


>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
           ferrireducens T118]
 gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
          Length = 706

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/698 (48%), Positives = 477/698 (68%), Gaps = 2/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG IARQ+ GAVL     TVVLATVV     K GQDFFPLT
Sbjct: 3   IFNKVTKTFQWGQNTVTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE  V+++ +  
Sbjct: 63  VDYLEKTYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAALIAVSAALSVSGIPFSGPIGAARVGYINGEYVLNPGQTARKDSVMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA QLSE+++L A++FGH +    I AI +L +   K      +    +
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++  +    L  +  I  K  R +   +    +++    +  +++   +  +  DI
Sbjct: 243 PLIAKVGALAAHKLEAAYQIRNKQARTRACREAYAVVMADLKLDGVAFDSVAVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+LSG   + FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALMAVLPSKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E++ ++  F PR+  M I PD+IR+VIG GG VIR + E+TG ++NID+DGT+ IAS+
Sbjct: 543 MAEAKTEVSTFAPRLFTMKINPDKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIASA 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ E A+  I+ IT   E+ KIY+G + K++DFGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 DPAKAEEAKRRIQQITAEVEIGKIYEGPITKILDFGALVNLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K +D + EG  V VK+++ D++G+IKLSMKV+    G+
Sbjct: 663 KVTDYLSEGQIVKVKVMETDEKGRIKLSMKVLLDRPGQ 700


>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
 gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
          Length = 717

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/691 (45%), Positives = 468/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  I+G++++NP +++ ++  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A+Q+ E+++L+AI+FGH+E K ++    ++ +   KE   +   +    +
Sbjct: 183 KDAINMVEAGADQVPEEIMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDATI 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
            +++ +M ++D+  +  + EK+ R   I+++KK+++ ++ + E      G++  +   I 
Sbjct: 243 NQDVREMAEKDMHAAIQVHEKHAREDAINEVKKRVIEHYEANEADGETLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIAGLSREILEEALQQAKVGRMHILDHMLSAI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S  
Sbjct: 543 AEPRKELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSID 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  I    +V +IY G+V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNEKAKKIIEDIVREVQVGEIYLGKVKRVEKFGAFVGLFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD + VK+++ D +G++ LS KV+
Sbjct: 663 VEDVVKIGDEISVKVIEIDKQGRVNLSRKVL 693


>gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum
           EbN1]
 gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum
           aromaticum EbN1]
          Length = 699

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/699 (49%), Positives = 480/699 (68%), Gaps = 3/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M         +    + LETG IARQ+ GAV+    +T+VLATVV  +  K GQDFFPLT
Sbjct: 1   MPTAIKKTFAYGAHTVTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA G+IPGG+ +RE RPTE E L SR+IDR IRPLF + + NE QVII V+  
Sbjct: 61  VDYVEKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF+GP+   +V Y  GQY+LNP +++ + S L+L V+
Sbjct: 121 NPEVDPDIPAMIGASAALAISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELNLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +LSE+V+L A++FGH + +  I AI++L ++  K          ++
Sbjct: 181 GTEAAVLMVESEARELSEEVMLGAVVFGHQQMQVAIRAINELVEVAGKPEWDWQPPAKNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFED 297
            L   + ++    L  +  I  K  R ++I++++K+     +          E+  +F D
Sbjct: 241 PLIARIKELAGAHLEEAFRITSKQARTQRINEIRKQTFGVVADGVEVPPTGNELKDIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L  + R+DGRD+ TVR I  +VG+L RTHGS+LF RG+TQA+V+ TLGT 
Sbjct: 301 LEAGVVRSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTG 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+++G  R  F++HYNF P +TGE  RMG   RRE+GHGRLA+RA+   LP   
Sbjct: 361 RDEQIIDAIAGEYRESFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG+SLA+MDAGVP+   VAGIAMGL+K+G+ F +L+
Sbjct: 421 DFSYTVRVVSEITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA  GR+HIL  M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+  R ++ EF PR+  M I P++IR+VIG GG VIRG+ E+TG  + + DDG+V I+S
Sbjct: 541 ALASHRGEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRGLQEETGTVIELQDDGSVTISS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    + A+E I +IT   EV K+Y G VV+++DFGA V+    RDGL+H+SQ++ ERV
Sbjct: 601 VSAEGAQLAKEKIEAITAEVEVGKVYNGTVVRLLDFGAIVNIMPGRDGLLHVSQIANERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
              +D VKEG  V VK+L+ D+RGKI+LSMK +     +
Sbjct: 661 NNVADYVKEGQAVRVKVLETDERGKIRLSMKALLDQPAE 699


>gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax borkumensis
           SK2]
 gi|123050749|sp|Q0VSR7|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis
           SK2]
          Length = 697

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/697 (49%), Positives = 470/697 (67%), Gaps = 4/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T +I++    + LETG+IARQ+  AV+   G+T VL TVV  +    GQ+FFPLT
Sbjct: 1   MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANPGQNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGG+L+RE RP+E E L  R+IDR IRPLF K + NE QV+  VM  
Sbjct: 61  VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P + +++  SAAL +SG+PF GP+  A+V Y +G Y+LNP   E  + +LDL V+
Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFSGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +LSED +L A++FGH E +P+I+ I + A     E       + ++
Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTETWDWKPAEQNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFED 297
            L+  +       L  +  I EK  R  ++ +L+   V+ F++ E  +    E+  +F  
Sbjct: 241 TLKAAIKDKFAAALGEAYTITEKMARYAKVGELRDACVAEFATGEDGAPEADEVKDLFGK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+  VVR  ++  K R+DGR  + VR I  QVG L +THGS+LF RG+TQAIV  TLG  
Sbjct: 301 IEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGM 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q++D+L G+ ++ FM+ YNF P   GE   +G+P RREIGHGRLARR +  V+P   
Sbjct: 361 RDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAVVPSVQ 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIIL 476
            FPYT+R+VSEITES+GSSSMA+VCG+S+ALMDAGVP++ PVAGIAMGLVK+ D  + +L
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGRYAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA  GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K ++ESR ++ +  P +  + I PD+IR+VIG GG  IR + E+TG  ++I+DDG+VKI 
Sbjct: 541 KAIAESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDDGSVKIY 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             +  + + A   +  IT   EV  IY+G+V +V+DFGAFV      +GL+HISQ++ ER
Sbjct: 601 GETREKADEAVRRVEEITAEAEVGAIYEGKVTRVVDFGAFVAIMPGTEGLLHISQIAEER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V K +D V EG+ + VK+LD D RG+IKLSMK   ++
Sbjct: 661 VEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMKEAKED 697


>gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
 gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
 gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 710

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/691 (48%), Positives = 470/691 (68%), Gaps = 2/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K       +  ++
Sbjct: 181 GTQGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++   +  L  +  I EK  R  Q+D +K +  +   +E  + + GEI  +   +
Sbjct: 241 ALRSRIAAQAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDDTLDAGEISDLLHAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   
Sbjct: 361 DAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGEA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKE 691


>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
           DSM 5159]
 gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
           DSM 5159]
          Length = 790

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/700 (46%), Positives = 466/700 (66%), Gaps = 13/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H   IE AGR L +ETGR+A Q+DGAVL  YGETVVL TVV  +   +G DFFPLTV Y
Sbjct: 5   IHERSIEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+ RRE +P+E  IL +R+ DR IRPLF K Y+NE QVI  V+  D E
Sbjct: 65  EEKMYAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQE 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+S++ ASAAL LS +P+ GPV   ++  ++G+ V+NP   +  +  +D+ V+GT 
Sbjct: 125 NEPDVLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVVAGTA 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           DA+LMVE +AN++SED  ++A++  H E K ++    +L  +  K     +  ++  +L+
Sbjct: 185 DAILMVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQENVELK 244

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW---------NEGEIV 292
           ++++  + + LR + F P+K +R +    L+++++++F                   E+ 
Sbjct: 245 QQIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVPNEPLAIGTPQSGLPTAKEVG 304

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +F+ +  ++VR  +L++  R DGR  + +R+I  QVGLL R HGS+LF RG TQ + V 
Sbjct: 305 DLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVC 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+E+EQ++DSL   +   +M HYNF P +TGE+ R+  PSRR+IGHG LA RA+  V
Sbjct: 365 TLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERALLAV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           LP   +FPYT+R+VSE+  S+GS+SMA+VCGSSLALMDAGVPI KPVAG+AMGLV D   
Sbjct: 425 LPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVTDQTT 484

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + IL+DI G ED LG MDFKVAGT  GITA+QMD+K+ GI+  IM  AL+QA+RGRL 
Sbjct: 485 GRYTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQARRGRLF 544

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++MS+V+   R ++  + PR+  + I P+QI  VIG GG+VIR I EQTG K++I++D
Sbjct: 545 ILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTKISIEED 604

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV I++++      A   I  +T VPEV +I+ G+VV ++  GAFV     +DG +HIS
Sbjct: 605 GTVFISAANEDAARRAVREIERLTRVPEVGEIFYGRVVTIIPSGAFVEILPGKDGFLHIS 664

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +++ ERV    DV+K G  + V ++     GKI LS K +
Sbjct: 665 EIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKAL 704


>gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|187470962|sp|A4SJR9|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 713

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/695 (48%), Positives = 472/695 (67%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+ +  +T V  TVV  +    G+DFFPLTV
Sbjct: 1   MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA G+IPGG+ RRE RP+E E L SR+IDR IRPLF + + NE QV+  VM  +
Sbjct: 61  NYQERTYAAGRIPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
              SP +V+M+ ASAAL +SG+PF GP+  A+V Y+NGQYVLNP   E  Q  LDL V+G
Sbjct: 121 PLVSPDIVAMIGASAALAISGIPFGGPIAAARVGYMNGQYVLNPTTAELPQSDLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSK 239
           T +AVLMVE EA  LSE+V+L A+++GH + + VI AI++ A     +P           
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPATNEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++   +L  +  I EK VR   I  +K++++    +     +  +I   F  ++
Sbjct: 241 LKAKIAELATAELGEAYRITEKAVRYAAIGAIKQRVIEQVIAAGVEDDAKKIGEEFHSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGRD E +R +S   G+L R HGS+LF RG+TQAIVV TLGT  D
Sbjct: 301 SRIVRGRVVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + FM+HYNF P   GE   MG+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQNIDELAGHRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QA+  RLHIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTTQGITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R ++ +F PR+  + I P++I++VIG GG VIR + E+TG  + +DDDGTV+I++ +
Sbjct: 541 QAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVA 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I +IT   EVN+IY+G+VV++ DFGAFV+    +DGLVHISQ++  RV  
Sbjct: 601 NEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +D +K GD V VK+L+ D +G+++LS+K  +  T
Sbjct: 661 VADFLKLGDVVKVKVLEVDRQGRVRLSIKEANAPT 695


>gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 715

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/695 (48%), Positives = 477/695 (68%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  +
Sbjct: 61  DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E + S LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ LSE+ +L A++FGH + + VIE I +  K   K      + + +  
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  +  +  I EK  R +QID +K  +V+  +++  + +EG I+ +   ++
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVVAQLTTQDETISEGAIIDIITALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + +VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++ 
Sbjct: 541 PAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +A    I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++ ERV +
Sbjct: 601 NNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVER 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +D +  G  V VK+++ D + +I+L+MK ++ +T
Sbjct: 661 VADYLSVGQEVTVKVVEIDRQNRIRLTMKDLNNDT 695


>gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
 gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
 gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           12129(1)]
 gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
 gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
 gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           12129(1)]
 gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
           11079-80]
          Length = 709

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 480/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
 gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
          Length = 706

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/697 (44%), Positives = 466/697 (66%), Gaps = 4/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+WAGR L +E G++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   ETKEFSIDWAGRKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQPKP-LDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M  +S AL +S +PFEGP+ G QV  I+G++++NP +D+ ++  ++L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALTVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEINLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+ +L+AI+FGH E K +I    ++A    KE + ++  +    +
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMFGHEEIKRLISFQEEIAAQVGKEKMEVELYQIDQDI 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
           E E+  + +ED+  +  + EK+ R   I ++K  +++ F  + +   +  ++  V + + 
Sbjct: 243 EAEVRGICEEDMIKAIQVQEKHAREAAIKEVKDDVIAKFEEKEADEAQLKQVKQVLDKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++K+R DGR  + +R +++QVGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KGEVRRLITEEKLRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+ P++P    F
Sbjct: 363 VQVIDGLGLEESKRFMHHYNFPLFSVGETGPIRGPGRREIGHGALGERALEPIIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIVSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL++ G+ + IL+DI
Sbjct: 423 PYTIRIVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIQSGEHYSILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HIL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLSREILEEALQQAKSGRMHILDSMLSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR +L ++ P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DG+V I+S+ 
Sbjct: 543 SESRSKLSQYAPKILTMHINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGSVFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K
Sbjct: 603 EEMNKKAKKIIEDIVREVEVGQLYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERIGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVV  GD + VK+ + D +G++ LS K V +   +
Sbjct: 663 VEDVVSIGDELLVKVTEIDRQGRVNLSRKAVLKEQRE 699


>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           14579]
 gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           14579]
          Length = 712

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/697 (46%), Positives = 472/697 (67%), Gaps = 4/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGR L +ETG++A+Q++GAVL  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + S  + +M+ +S AL +S +PFEGP+ GA V  ING++V+NP +++ +Q  + L V+GT
Sbjct: 123 DCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L
Sbjct: 183 KDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
            + + +M +ED+  +  + EK+ R   I+++KK+++ ++ ++ +  +  G++  +   I 
Sbjct: 243 NQAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG +  RA+ PV+P    F
Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGAIGERALEPVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V+
Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    +V +IY+ +V +V  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEAKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVVK GD + VK+++ D +G++ LS KV+ +   +
Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVLLKEEQE 699


>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
 gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
          Length = 723

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/697 (48%), Positives = 483/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SG+PF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQLATSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWAPAAKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++++    L+ +  + +K  R +++ ++   + +  ++     ++ E+ ++  D+
Sbjct: 243 PLIAKVTEVALPLLQEAYQLRQKSARSQKLKEVNANVAAALAAAGVEADKVEVGNIMFDL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +L  + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 303 EAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 363 DEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QA+ GRLHIL++M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  ERV 
Sbjct: 603 STDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVK 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              D +KEG  V VKL+  D++G+++LS+K      G
Sbjct: 663 DIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALTEEG 699


>gi|77359947|ref|YP_339522.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588883|sp|Q3IJ73|PNP_PSEHT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76874858|emb|CAI86079.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Pseudoalteromonas haloplanktis TAC125]
          Length = 708

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/694 (48%), Positives = 471/694 (67%), Gaps = 5/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQ
Sbjct: 4   IIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E 
Sbjct: 64  ERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+++  SAAL +SG+PF GP+   +V YI+G+YVLNP L E ++  LDL V+GT +
Sbjct: 124 QPDMVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAGTDN 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AVLMVE EA+ L+ED++L A+++GH + + +I AI +      K      +   +  LEE
Sbjct: 184 AVLMVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEFKAEAGKPTWDWTAPAKNVSLEE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---SEHSSWNEGEIVSVFEDIQ 299
           +++ +  + +  +  I +K  R + +   K ++V+  +   +E  S ++ EI  +F  ++
Sbjct: 244 KVASIAADKVGEAYRITDKVARKEALGVAKDEVVAVLTSELAEGESLDKQEIGKIFGSLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D
Sbjct: 304 KKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P   +F
Sbjct: 364 SQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTLTEF 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ D F++LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M K +
Sbjct: 484 LGDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDKAI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S    +L +F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++ 
Sbjct: 544 SAPSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV  
Sbjct: 604 GESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            +D + EG  V VK+L+ D +G+++LS+K   ++
Sbjct: 664 VTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMES 697


>gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           NM305]
 gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           NM305]
          Length = 711

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/695 (47%), Positives = 474/695 (68%), Gaps = 2/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + LETG IARQ+  AV+A+  +T V  TVV  + + +GQDFFPLTV+Y
Sbjct: 3   PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + +
Sbjct: 63  QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP   E +   LDL V+GT 
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            AVLMVE EA+ L+E+ +L A++FGH + + VIE I +  K   K      + + +  L 
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++  + +  L  +  I EK  R +QID +K  +++  ++E  + + G+IV +   ++++
Sbjct: 243 NKVKALAEVRLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQ 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ ++  + R+DGR  +TVR +    G+L RTHGS+LF RG+TQA+ V TLGT  D Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +  
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITSEIMRIALNQAKGARMHILGVMEQAIPA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA++   
Sbjct: 543 PRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +   E I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++  RV + +
Sbjct: 603 AAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITEARVERVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           D +  G  V VK+++ D +G+I+L+MK ++    +
Sbjct: 663 DYLSVGQEVQVKVVEIDRQGRIRLTMKDLNNEATE 697


>gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
 gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
 gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
           8457]
 gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|227080828|ref|YP_002809379.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
 gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
           330286]
 gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
 gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae
           MJ-1236]
 gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
 gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
 gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
 gi|81545361|sp|Q9KU76|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782745|sp|C3LSQ2|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
 gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
 gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
           8457]
 gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
 gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
 gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
           330286]
 gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236]
 gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
 gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
 gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
          Length = 709

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 481/697 (69%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
 gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395]
 gi|187611333|sp|A5F913|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
 gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
 gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
          Length = 712

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 480/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISSEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittGG]
 gi|187610273|sp|A5UG34|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG]
          Length = 709

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 476/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+   +V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    NEG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEINEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae
           Ep1/96]
          Length = 732

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/689 (48%), Positives = 470/689 (68%), Gaps = 2/689 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 25  NPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVN 84

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 85  YQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNP 144

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GT
Sbjct: 145 QVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGT 204

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K       +  ++ L
Sbjct: 205 KGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEAL 264

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + + GEI  +   ++ 
Sbjct: 265 RSRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEK 324

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 325 DVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 384

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FP
Sbjct: 385 QNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFP 444

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI 
Sbjct: 445 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDIL 504

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S
Sbjct: 505 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIS 564

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 565 GPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 624

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 625 EKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 684

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 685 TDYLQMGQEVPVKVLEVDRQGRVRLSIKE 713


>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
 gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
          Length = 709

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 476/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 GNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           R3021]
 gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           R3021]
          Length = 709

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 476/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
 gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
          Length = 701

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/698 (50%), Positives = 472/698 (67%), Gaps = 3/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V   E  +  +   LETG+IARQ+ GAVL +  +  VL TVV  +     +DFFPLT
Sbjct: 1   MFNVVKKEFRFGDQTYTLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADPSKDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGGY +RE +P+E E L SR+IDR +RPLF + ++NE Q+I  V+  
Sbjct: 61  VNYQEKTYASGRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179
           D ++ P + ++V ASAAL +SG+PF GP+  A+V +++G YVLNP     ++ SLDL V+
Sbjct: 121 DKKTDPDIAALVGASAALAISGIPFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA +L+ED +L A+++GH E +  IEAI+  AK          +++ + 
Sbjct: 181 GTDQAVLMVESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEVGTPRWEWQAEEENV 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
            L+  +    +  LR +  I EK  R +Q+  +K + VS  + E      + E+  +  D
Sbjct: 241 GLKARIRDGYEAQLRQAYTITEKQARYEQVGAIKAQAVSDLAVEGQSEITKEEVSRLLGD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  +L    R+DGRD++TVR IS +VG L RTHGS+LF RG+TQAIV  TLG+ 
Sbjct: 301 LEYYVVRDNILSAHPRIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSM 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q VD L G +   FM+HYNF P   GE      P RREIGHGRLARR I  VLP+ +
Sbjct: 361 RDSQTVDYLEGARSEPFMLHYNFPPFCVGETGGQLGPKRREIGHGRLARRGIQAVLPENS 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+GD F +L+
Sbjct: 421 AFPYAIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA+ GRLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIDGITEEIMEVALNQARDGRLHILGEMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+  SR  L    P      I PD+IR+VIG GG  IR I E+T A ++I+D G V+I  
Sbjct: 541 VIEASRPALSRDAPVYLTTKIDPDKIRDVIGKGGATIRQICEETSATIDIEDTGVVRIYG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA   + +IT  PE+ +IY G+V +++DFGAFV F   +DGLVHISQ++ ERV
Sbjct: 601 ENGGSADAALARVLAITTEPEIGQIYTGKVARIVDFGAFVTFMPGQDGLVHISQIAEERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           AK +D ++EG  V VK+LD D+RG++KLS+K    + G
Sbjct: 661 AKVTDYLQEGQEVQVKVLDIDNRGRVKLSIKEAKADAG 698


>gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 738

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/689 (48%), Positives = 470/689 (68%), Gaps = 2/689 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 31  NPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVN 90

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E L SR+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 91  YQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNP 150

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSGLPF GP+  A+V Y+N QYVLNP  DE  +  LDL V+GT
Sbjct: 151 QVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVAGT 210

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSE+ +L A++FGH++ + VI+ I+ L     K       +  ++ L
Sbjct: 211 KGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNEAL 270

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I EK  R  Q+D +K +  +   +E  + + GEI  +   ++ 
Sbjct: 271 RSRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALLAEDEALDAGEISDLLHALEK 330

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 331 DVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 390

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + ++F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P+   FP
Sbjct: 391 QNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGDAFP 450

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVKD ++F++LSDI 
Sbjct: 451 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLSDIL 510

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + +S
Sbjct: 511 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAIS 570

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++  
Sbjct: 571 GPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 630

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K 
Sbjct: 631 EKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 690

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +D ++ G  V VK+L+ D +G+++LS+K 
Sbjct: 691 TDYLQMGQEVPVKVLEVDRQGRVRLSIKE 719


>gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
 gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
          Length = 709

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 478/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   +  
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETP 697


>gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
 gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
          Length = 709

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 478/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   +  
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETP 697


>gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
 gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
 gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           AM-19226]
 gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
 gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
 gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           AM-19226]
          Length = 708

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 480/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
           SWAT-3]
 gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
           SWAT-3]
          Length = 706

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/699 (49%), Positives = 478/699 (68%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           SGT  AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 SGTAGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   ++++ +  L  +  I EK  R  +I ++  ++     SE    N  E+ S+F D
Sbjct: 241 TALNTRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSEDEEVNLKEVHSIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK   +   +
Sbjct: 661 EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAE 699


>gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
 gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
 gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
 gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
          Length = 709

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 478/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   +  
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETP 697


>gi|254507523|ref|ZP_05119657.1| 3' exoribonuclease family, domain 2, protein [Vibrio
           parahaemolyticus 16]
 gi|219549593|gb|EED26584.1| 3' exoribonuclease family, domain 2, protein [Vibrio
           parahaemolyticus 16]
          Length = 709

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R ++ EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREEISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter
           sulfurreducens PCA]
 gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           PCA]
          Length = 697

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/687 (48%), Positives = 464/687 (67%), Gaps = 3/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V +E+ GR + + TG+ A+Q+ GAV+ + G+TVVL T V  +S ++GQDFFPLTVNYQ
Sbjct: 4   HKVNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP++NE L SR IDR IRPLF + + N+TQ++  V+  D ++
Sbjct: 64  EKAYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++M+ ASAAL +S +PF GP+ G +V  ++GQ+V NP +++ ++  L++ V+ ++D
Sbjct: 124 DPGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AV+MVE  A + SE  VL+AI FGH   +P+IEA + L K+       + +    + L+ 
Sbjct: 184 AVIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVDEALKT 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +  +    ++ +  I  K  R  +I ++  + +     E+    E EI     D + ++
Sbjct: 244 RVKDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPEYEG-RESEIKGFLGDFEYEL 302

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++    R+DGRD+ T+R IS +V +L R HGS+LF RG+TQA+V  TLGT  DEQ 
Sbjct: 303 VREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQR 362

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DSL G  R  F++HYNF P + GE S   AP RREIGHG LA RA+  V+P+   FPYT
Sbjct: 363 IDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYT 422

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVS+I ES+GSSSMATVCG +LA+MDAGVPI  PVAGIAMGL+K+G+   ILSDI GD
Sbjct: 423 IRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILGD 482

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT++G+TA+QMD+KI G++  IM  AL QA+ GRLHIL +M++ ++  
Sbjct: 483 EDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAAP 542

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L  + PR+  + +  D+IR+VIG GGK IRGI E TG  ++I+D G + IAS+S   
Sbjct: 543 RTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKEA 602

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A +MIR +T   E  K+Y G V KVMDFGAFV      DGLVHIS+L TERV   +D
Sbjct: 603 CDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTD 662

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V+ EGD V VK +  D +GKIKLS K 
Sbjct: 663 VLNEGDKVLVKCIGIDKQGKIKLSRKE 689


>gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
 gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
          Length = 701

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/693 (49%), Positives = 482/693 (69%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +S    + FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF GP+  A+V +     Y+LNP  ++ +  SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT+DAVLMVE EA +L+ED +L A++F H E + VI+A+++LA    K       K + 
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHEEFQVVIQAVAELAAEAGKPTWDWQPKPEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     E +  +  I  K  R  ++ +L+ ++V+  +++  + +  E+   F +
Sbjct: 241 TALLNAIRGEFGEAISQAYTITVKQDRYARLGELRDQVVAKLANDEGAPSAAEVKEAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLV +GD F +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL+QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+++SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 VIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAA++ + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS +RV
Sbjct: 601 ETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +DV+KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDV 693


>gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
           29755]
 gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           SH0165]
 gi|254782722|sp|B8F492|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
           29755]
 gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           SH0165]
          Length = 709

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/699 (47%), Positives = 478/699 (68%), Gaps = 3/699 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + LETG IARQ+  AV+A+  +T V  TVV  + + +GQDFFPLTV+Y
Sbjct: 3   PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + +
Sbjct: 63  QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP   E +   LDL V+GT 
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            AVLMVE EA+ L+E+ +L A++FGH + + VIE I +  K   K      + + +  L 
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++  + +  L  +  I EK  R +QID +K  +++  ++E  + + G+IV +   ++++
Sbjct: 243 NKVKALAEARLGDAYRITEKQARYEQIDAIKADVIAQLTAEDETISSGKIVDIITALESQ 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ ++  + R+DGR  +TVR +    G+L RTHGS+LF RG+TQA+ V TLGT  D Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +  
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA++   
Sbjct: 543 PRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +   E I  I    EVN IYKG+V +V+DFGAFV   G ++GLVHISQ++  RV + +
Sbjct: 603 AAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN-TGKPIV 699
           D +  G  V VK+++ + +G+I+L+MK ++ + T + +V
Sbjct: 663 DYLSVGQDVQVKVVEIERQGRIRLTMKDLNGDATAREVV 701


>gi|332532415|ref|ZP_08408293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038058|gb|EGI74505.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 708

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/694 (49%), Positives = 473/694 (68%), Gaps = 5/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E +     + LETG IARQ+DGAVLA+ G+T VL TVV  R  + GQDFFPLTVNYQ
Sbjct: 4   IIKEFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGG+L+RE RP + E LI+R+IDR IRPLF   + NE QVI  V+  + E 
Sbjct: 64  ERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+M+  SAAL +SG+PF GP+  ++V YING+YVLNP L E ++  LDL V+GT  
Sbjct: 124 QPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGTDK 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           AVLMVE EAN L+EDV+L A+++GH + + +I AI +      K      + + +  LE+
Sbjct: 184 AVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAQAGKPTWDWTAPEKNVALED 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFEDIQ 299
           +++ +  E +  +  I +K  R + + + K ++V+  ++E +     ++ EI  +F  ++
Sbjct: 244 KVATIAAEKVGAAYLITDKVARKEALGEAKDEVVAVLTAELAEGESLDKQEIGKIFGSLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VR  +   + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D
Sbjct: 304 KKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+GT +N FM++YNF P   GE   +G+P RREIGHG LA+R I  V+P   +F
Sbjct: 364 SQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTLTEF 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALM+AGVPI   VAGIAMGLVK+ D F++LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +
Sbjct: 484 LGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S    +L  F PR+  M IP  +I  VIG GG  IR + E+TG  + I DDGT+KIA++ 
Sbjct: 544 SAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIAATD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I  +T   EV  IY+G+VV+++DFGAFV+    +DGLVHISQ+STERV  
Sbjct: 604 GESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            +D + EG  V VK+L+ D +G+++LS+K   ++
Sbjct: 664 VADHLSEGQEVKVKVLEVDRQGRVRLSIKEAMES 697


>gi|319787423|ref|YP_004146898.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465935|gb|ADV27667.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 701

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/696 (51%), Positives = 480/696 (68%), Gaps = 4/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ G+V+    +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGSVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE RPTE E LISR+IDR IRPLF + YKNE Q+I  VM  + E
Sbjct: 63  QEKFYAGGRIPGGFFKREGRPTEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
               + +++ ASAAL L+G PF+GP+  A+V Y +GQY+LNP   E  +  L+L V+GT 
Sbjct: 123 IDGDIPALIGASAALSLAGTPFKGPIGAAKVGYKDGQYILNPSASELAESKLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI AI++L      K    +       L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELVAEAGTKPSQWVAPAKNEALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + +   L  +  I +K  R   I  +KK +    +       WN  E+   F +++
Sbjct: 243 AALKEAVGNRLADAFQIRDKLERRDAIAAIKKDVAEQLAGRVAAEGWNPAELGKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  +TVR IS + G+L RTHGS++F RG+TQAIVV TLGT  D
Sbjct: 303 YRTMRDSVLDTKVRIDGRALDTVRPISVKTGVLPRTHGSAMFTRGETQAIVVTTLGTTRD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQIIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSIEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI
Sbjct: 423 PYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  AL+QAK GRLHIL EM+K L
Sbjct: 483 LGDEDHLGDMDFKVAGTADGVSALQMDIKIEGITEEIMKQALEQAKAGRLHILGEMAKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L E+ PR+  + I PD+IR VIG GG  I+GI ++TG +++I DDGT+ IAS +
Sbjct: 543 TAPRAELSEYAPRLLTIKIHPDKIREVIGKGGATIQGITKETGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AAAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            SD +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 663 VSDKLKEGDVVKVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
 gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
          Length = 709

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 480/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846]
          Length = 709

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 476/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIIAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
 gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
          Length = 713

 Score =  807 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/697 (50%), Positives = 478/697 (68%), Gaps = 2/697 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T + ++    + LETG +ARQ+  AV+A+  +T VL +VV  +  ++GQDFFPLTV
Sbjct: 1   MNPITKQFQYGQHTVTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+ENE L SR+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            + SP +V+M+  SAAL +SG+PF GP+  A+V  IN +YVLNP  DE  +  LDL V+G
Sbjct: 121 PQVSPDLVAMIGTSAALAISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           TQ AVLMVE EAN LSED +L A++FGH   + VI+AI++ A+   KE     +      
Sbjct: 181 TQQAVLMVESEANLLSEDTMLGAVMFGHESMQVVIDAINEFAQEAGKEKWDWQAPQKDAT 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L E++  + +  +  +  I +K  R  +I ++K+ M+    +E+   +  E   +F D++
Sbjct: 241 LVEKVKSLAEAGIGEAYRITDKAERYGKIAEVKQAMIEQLVAENEEADTDEAGKIFHDVE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR+ +L  + R+DGRD + VR IS   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KDIVRSRILAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+GT  + F++HYNF P   GE   +GAP RREIGHGRLA+R I  V+P   +F
Sbjct: 361 AQMIDELTGTSTSRFLLHYNFPPYCVGETGMVGAPKRREIGHGRLAKRGIQAVMPSHEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+GD  ++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG + GITA+QMD+KI GI+ +IM  AL QAK  RLHIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGNNEGITALQMDIKIDGITRDIMESALGQAKAARLHILSVMDEAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + PR   + I  D+I++VIG GG VIR + E T   + I DDGT+KIA+S 
Sbjct: 541 GEHRDELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKIAASD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + +AA + I+ +T   EV KIY+G+V +++DFGAFV     +DGLVHISQ++ ERV  
Sbjct: 601 QNDADAAIKRIKELTAEIEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVND 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +D +K GDTV VK+L+ D +G+++LSMK   +   +
Sbjct: 661 VNDYLKVGDTVPVKVLEIDRQGRVRLSMKEAAEKPAE 697


>gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittHH]
 gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittHH]
          Length = 709

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 477/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVTIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis
           Bem]
 gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 696

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/688 (50%), Positives = 476/688 (69%), Gaps = 3/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VHTV+ E  G+ + +ETG+IA+Q+ GAV+   G+T+VL T V  +S K+GQ FFPLTVNY
Sbjct: 2   VHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE RP++NE L  R+IDR IRPLF + + N+TQ++  V+  D +
Sbjct: 62  QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P ++SM+ ASAALM+S +PF GP+ G +V  ++GQ++ NP  ++++   L++ ++ +Q
Sbjct: 122 NDPGILSMIGASAALMVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDLEIVIAASQ 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+LMVE  A ++SED +L+AI FGH   +PV+ A  +LAK        I +   ++ L+
Sbjct: 182 DAILMVEGSACEVSEDDLLEAIFFGHKAVQPVLAAQLELAKKVGTSKREIPAPVVNEALK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +S + KE ++ +  I  K  R   ID +  + V+  S+E    +E EI    ED++  
Sbjct: 242 ARVSALAKEGMKQAVRIKTKVERHLAIDAIADETVAALSAEFEG-SEKEIKGFIEDLEYD 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  ++    R+DGRD++T+R IS +V LL R HGS+LF RG+TQ+IV  TLGT  DEQ
Sbjct: 301 LVREHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RA+  VLP+   FPY
Sbjct: 361 RIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+ITES+GSSSMATVCG SL++MDAG+PI  PVAGIAMGL+K+GDDF ILSDI G
Sbjct: 421 TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM  AL QAK GR+HIL EM+K +  
Sbjct: 481 DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIGA 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR  L  F PR+  + +  D+IR+VIG GGK IR + E TG  ++IDD G + IAS++  
Sbjct: 541 SRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIASTNKE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MIR++T   E  K+Y G V K+M+FGAFV      DGLVH+S+L TERV   S
Sbjct: 601 ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           D++KEGD V VK +  D +GKIKLS K 
Sbjct: 661 DILKEGDKVLVKCIGIDKQGKIKLSRKE 688


>gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 716

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/690 (48%), Positives = 475/690 (68%), Gaps = 2/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+Y
Sbjct: 3   PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + +
Sbjct: 63  QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E +   LDL VSGT 
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVSGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            AVLMVE EA+ L+E+ +L A++FGH + + VIE I +  K   K      + + +  L 
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++  + +  L  +  I EK VR +QID +K ++++  ++E  + +EG I+ +   ++++
Sbjct: 243 NKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQ 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ ++  + R+DGR  +TVR +     +L RTHGS+LF RG+TQA+ V TLGT  D Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +  
Sbjct: 483 DEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + ++ PR+  M I P +I++VIG GG  IR + E+T   ++IDDDGTVKIA++   
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +A    I  I    EVN+IY G+V +V+DFGAFV   G ++GLVHISQ++ ERV + +
Sbjct: 603 AAKAVMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           D +  G  V VK+++ D +G+I+L+MK ++
Sbjct: 663 DYLTVGQEVQVKVVEIDRQGRIRLTMKDIN 692


>gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
 gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
          Length = 700

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/694 (49%), Positives = 477/694 (68%), Gaps = 5/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 ++    + LETGRIARQ+ GAV+    +TVVL TVV  +   + +DF PLTVNY
Sbjct: 3   PVKKAFQYGDHTVTLETGRIARQASGAVMVNMSDTVVLVTVVGKKDQGEPRDFLPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA GKIPGG+ +RE RP+E E L+SR+IDR +RPLF   + NE Q++  V+  + E
Sbjct: 63  QERTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPVRPLFPAGFTNEVQIVATVISMNNE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL +SG+PF+ P+   +V Y  G +VLNP   + + S LDL V+GT 
Sbjct: 123 VDADIPAMIGASAALAVSGIPFDSPLGAGRVGYHKGAFVLNPTFSQLESSDLDLVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DAVLMVE EAN LSE  +LDA+IFGH + + VI AI++LA+   K        +  + L 
Sbjct: 183 DAVLMVESEANCLSEQTMLDAVIFGHEQMQTVIAAINELAQEAGKPRWDWAPVEKDQRLA 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFEDI 298
           + ++++ +  L  +  + EK  R  ++  +++++++           W+E EI + F+ +
Sbjct: 243 QALTEIAERPLGEAYRVAEKQERLDRVSAVREEVMTRLTLGEEPTEGWSEREIGNAFKGL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+VR  +L  + R+DGRD++TVR IS +V  L RTHGS++F RG+TQAIVV TLGT  
Sbjct: 303 EKKIVRGSILRGEPRIDGRDNKTVRPISIEVATLPRTHGSAIFTRGETQAIVVTTLGTGR 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D++ G ++  FM+HYNF P + GE   MG P RREIGHGRLA+R I  V+P   +
Sbjct: 363 DAQIIDAIEGERKEPFMLHYNFPPYSVGETGFMGVPKRREIGHGRLAKRGIQAVMPSQEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            PY +R+VSEITES+GSSSMATVCG+SLALMDAGVPI  PVAGIAMGL+K+  +F +L+D
Sbjct: 423 CPYVIRVVSEITESNGSSSMATVCGTSLALMDAGVPIKAPVAGIAMGLIKEESEFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+  IM +AL+QA+ GRLHIL++M+ V
Sbjct: 483 ILGDEDHLGDMDFKVAGTEEGVTALQMDIKINGITRQIMEVALEQARTGRLHILSKMNAV 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +++ R ++  + PR+  M I P++IR+VIG GG  IR + E+TG  ++I DDGTV IAS 
Sbjct: 543 IAKPRGEMSAYAPRLLTMKIDPEKIRDVIGKGGATIRQLTEETGTTIDIVDDGTVTIASV 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A  E AR  I  +T   EV +IY+G+V K+MDFGAFV+    RDGLVHISQ+S  RV 
Sbjct: 603 DKAAGEEARRRIELLTADVEVGRIYEGRVTKLMDFGAFVNILPGRDGLVHISQISNRRVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             S+ + EG  V VK+L+ D +G+I+LS+K +++
Sbjct: 663 SVSEELAEGQRVRVKVLEVDRQGRIRLSIKAINE 696


>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 717

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/697 (49%), Positives = 484/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  + +   K      +     
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDMVRDGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVDADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQMVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 722

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/697 (49%), Positives = 487/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W G  +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 61  VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI +L +   K      +     
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVP+   VAG+AMGL+ + + F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 481 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 541 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 601 SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 661 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 697


>gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 759

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/703 (47%), Positives = 482/703 (68%), Gaps = 6/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ++GAVL     TV+LATV   +S K GQDFFPLT
Sbjct: 3   IFNKVTKSFQWGDKTVVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR IRPLF + + NE  V+++ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+  SAAL +SG+PF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIGVSAALAISGIPFAGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QLSED++L  ++FGH +    I AI +L +   K      +  +  
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGGVVFGHEQANIAINAIHELVREAGKPVWDWQAPAEDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               ++  + +E LR    I  K  R + + +    ++    +    ++ G++  +   I
Sbjct: 243 AFVAKVKDLAEEKLRAVYQIRSKQARTQALREANASVMEALKASGEPFDAGKVGDLLFAI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 ESKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + FM HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  RLHIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG VIR + E+TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A++ I  IT   E+ KIY+G VVK++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 DAEKADVAKKRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ----NTGKP 697
           K +D + EG  V VK+L+ D++G++KLSM+ +      ++G+P
Sbjct: 663 KVTDYLTEGQVVKVKVLETDEKGRVKLSMRALLDRPMGDSGRP 705


>gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
           pv. campestris]
          Length = 735

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/698 (50%), Positives = 478/698 (68%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L T V  ++ ++GQDFFPLTV+Y
Sbjct: 34  KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDY 93

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 94  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 153

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 154 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 213

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      K    +     + L 
Sbjct: 214 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTALI 273

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + +   L  +  + +K  R   I  +KK ++   +       W+  E+   F +++
Sbjct: 274 SALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELE 333

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D
Sbjct: 334 YHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARD 393

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 394 GQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 453

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI
Sbjct: 454 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDI 513

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EMSK L
Sbjct: 514 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKAL 573

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 574 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 633

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 634 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 693

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 694 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 731


>gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
           C-113]
          Length = 695

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/693 (50%), Positives = 483/693 (69%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M  +  V IE+  RPL LETG IARQ+ GAV+  YGETVVL TVV  +   +G+DFFPLT
Sbjct: 1   MTPIKKV-IEYGDRPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  
Sbjct: 60  VNYQERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P + S++ ASAAL LSG+PF  P+  A+V YI+GQYVLNP L + ++ +LDL V+
Sbjct: 120 DSENDPDIPSLIGASAALTLSGIPFATPIAAARVGYIDGQYVLNPTLSQMEESALDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA +L E+++L +++FGH E + VI+ I +LA+   K      S  +  
Sbjct: 180 GTEKAVLMVESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEAGKPAWDWQSPIEEE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
            L+  +  + +  ++ +  +  K  R   + +L+  +V      ++S W+  +++     
Sbjct: 240 DLKSAIRDIGEARVQEAYQVRSKQERQACLTELRNSIVGSLVPEDNSQWSREQVLEAMGA 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ ++VR  +L    R+DGRD+  +R IS   GLL RTHGS+LF RG+TQ++V  TLGT 
Sbjct: 300 LEKRLVREQILAGGERIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTE 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D++ G +R  FM+HYNF P   GE   +G+P RREIGHGRLA+R+++ V+P   
Sbjct: 360 RDAQVIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNAVVPDEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI  PVAGIAMGL+K+ D F +LS
Sbjct: 420 SFPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEADRFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI+E IM  AL QA+ GR HIL +M++
Sbjct: 480 DILGDEDHLGDMDFKVAGTEKGVTALQMDIKIDGITEEIMRTALTQAREGRFHILQKMNE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++S  R ++ E+ PR+ +  I P++IR+VIG GG  IR + E+TG  ++I DDGTVKI S
Sbjct: 540 IISTPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A+ + A+  +  I    EV KIY+G+V ++MDFGAFV     +DGL+HISQ+S ERV
Sbjct: 600 ADKADGQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              SD + EGD + VK+L+ D +G+++LS+K +
Sbjct: 660 KNVSDKLSEGDIIRVKVLEVDKQGRVRLSVKAI 692


>gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
           fermentans DSM 20731]
          Length = 690

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/688 (45%), Positives = 469/688 (68%), Gaps = 3/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+   ++ GR L +ETG+IA+Q++GAVL  YGET V+       + ++G DFFPLTV++
Sbjct: 1   MHSFSTDFGGRTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+LRRE RP E  IL SR+IDR IRP+F   Y N+ Q++   +  D +
Sbjct: 61  EEKMYAVGKIPGGFLRREGRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           ++P + +M+ AS AL +S +PFEGP+ G +V  I+GQ+++ P +++ +   L+L V+GT+
Sbjct: 121 NAPDIPAMIGASCALSISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSELNLAVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DA+LMVE  A ++SE+V+LDAI F H E K ++E   K+     K  +  +      +L 
Sbjct: 181 DAILMVEAGAKEVSEEVMLDAIWFAHGEIKKLVEFQEKIQAEVGKPKMDFEVYTPPEELA 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+    +  +  +   P+K  R K + + K++++++F+  +   NE +I  V   +  +
Sbjct: 241 KEIEAYGEPKIHDALMDPDKLHRDKMVSEAKEEILAHFTELYPD-NEIDIAHVVAKLVKR 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V R ++   K+R DGR  + VR IS +VGLL R HG SLF RG TQ +  + L    + Q
Sbjct: 300 VFRHIITVDKIRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +++L+G  +  ++ HYNF P + GE   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 360 NLETLAGDIQKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSMA+ C S+L+LMDAGVPI  PV+G+AMGLVK+G++F IL+DI G
Sbjct: 420 TIRLVSEVLESNGSSSMASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGENFTILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAGT  GITA+QMD+K+ G++++I+  AL QAK+GR  IL +M + ++E
Sbjct: 480 LEDANGDMDFKVAGTSKGITAIQMDIKVDGLTKDILQAALAQAKKGRAFILGKMLECIAE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL ++ P++  + + P++I+++IG GGK+I+ IVE TGA+++I+DDGTV IA++   
Sbjct: 540 PRKQLKKYAPKITTIKVNPEKIKDIIGPGGKIIKKIVEDTGAQIDINDDGTVYIAAADSE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +AA + I+ IT  PEV KIY G+V ++M+FGAFV F   R+GLVHISQL+ ERV K  
Sbjct: 600 SADAAIKTIQDITAEPEVGKIYTGKVTRIMNFGAFVEFMPGREGLVHISQLAKERVEKVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           DVV  GD + VKL++ D +G++ LS K 
Sbjct: 660 DVVNVGDEIVVKLVEIDSKGRLNLSRKA 687


>gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
 gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
          Length = 708

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 479/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++   +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAAQAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12D]
 gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D]
          Length = 724

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/697 (49%), Positives = 487/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W G  +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI +L +   K      +     
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K + +  +      +  E+ ++  ++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEAGVEADGVEVDNILFEL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 303 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+ PVLP+  +
Sbjct: 363 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVP+   VAG+AMGL+ + + F +L+D
Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMRAA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 603 SSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 663 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 699


>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
 gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
          Length = 709

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/699 (47%), Positives = 476/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I+++IG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GL+HISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
           102891]
 gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
           102891]
          Length = 710

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/702 (49%), Positives = 477/702 (67%), Gaps = 3/702 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++ A   A       +  + 
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVISAINEFAAEVATPAWDWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I  +  ++     +E    N  EI ++F D
Sbjct: 241 TALVAKIAELAETKLVEAYQITEKMARYDRIHTIAAEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGTAAQEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            K SD + EG  V VK+L+ D +G+++LSMK   + T + + 
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKTEEAVA 702


>gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           6P18H1]
 gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           6P18H1]
          Length = 709

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/699 (48%), Positives = 477/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L++R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittII]
 gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittII]
 gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           10810]
 gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866]
          Length = 709

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 477/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           R3021]
 gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           7P49H1]
 gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           22.4-21]
 gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           7P49H1]
          Length = 709

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/699 (48%), Positives = 477/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           metallireducens GS-15]
 gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter
           metallireducens GS-15]
          Length = 697

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/690 (48%), Positives = 467/690 (67%), Gaps = 3/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +   V +++ GR + + TG++A+Q+ GAV+ + GET+VL T V  +S K+GQDFFPLTV
Sbjct: 1   MNEQKVNVDFGGRTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+ YA GKIPGG+ +RE RPTENE L  R IDR IRPLF + + N+TQ++  V+  D
Sbjct: 61  NYQEKAYAGGKIPGGFFKREGRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P +++M+ ASAAL +S +PF GP+ G +V  ++G+++ NP  ++     L++ V+ 
Sbjct: 121 QDNDPGILAMIGASAALEVSDIPFFGPIAGVKVGRVDGKFICNPTAEQLAASDLEVVVAA 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           ++DAV+MVE  A ++SE  +L+AI FGH   +P+I+A  +L K        I      + 
Sbjct: 181 SRDAVIMVEGGAAEISEADLLEAIFFGHASVQPIIDAQIELRKQAGVPKREIAPPAVDEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++    ++ +  I  K  R  +I  +  + V+   ++ S     EI    +  +
Sbjct: 241 LGAKVKELAYAQMKDAVRIRSKQERHNRISAIADETVAALEADFSG-RGAEIKDFLDGFE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L    R+DGRD++T+R I+++VG+L R HGS+LF RG+TQA+V  TLGT  D
Sbjct: 300 YELVREHILKDGERIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RA+  VLP+   F
Sbjct: 360 EQRIDSLYGESRKRFMLHYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDDF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIVS+I ES+GSSSMA+VCG +L++MDAGVPIS PVAGIAMGL+K+GDD  ILSDI
Sbjct: 420 PYTIRIVSDILESNGSSSMASVCGGALSMMDAGVPISAPVAGIAMGLIKEGDDIAILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +G+TA+QMD+KI G++  IM  AL+QAK GRLHIL +M++ L
Sbjct: 480 LGDEDHLGDMDFKVAGTSTGVTAIQMDIKITGVTREIMGKALEQAKEGRLHILGKMAEAL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  L  + PR+  + +  D+IR+VIG GGK +RGI E TG  ++I+D G + IAS++
Sbjct: 540 AAPRTDLSPYAPRITTIWVKTDKIRDVIGAGGKNVRGITEATGVSIDIEDTGKINIASTN 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A +MIR +T   E  K+Y G V KVMDFGAFV      DGLVHIS+L TERV  
Sbjct: 600 KEACDKAIKMIRDLTAEAEEGKLYMGTVRKVMDFGAFVEIFPGTDGLVHISELDTERVKD 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            +D++KEGD V VK +  D +GKIKLS K 
Sbjct: 660 VTDILKEGDKVLVKCIGIDKQGKIKLSRKE 689


>gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 716

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/690 (47%), Positives = 475/690 (68%), Gaps = 2/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV+Y
Sbjct: 3   PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGG+ +RE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + +
Sbjct: 63  QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP   E +   LDL V+GT 
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            AVLMVE EA+ L+E+ +L A++FGH + + VIE + +  K   K      + + +  L 
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKEAGKPRWDWVAPEPNTDLI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++  + +  L  +  I EK VR +QID +K ++++  ++E  + +EG I+ +   ++++
Sbjct: 243 NKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLTAEDETVSEGTIIDIITALESQ 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ ++  + R+DGR  +TVR +     +L RTHGS+LF RG+TQA+ V TLGT  D Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +  
Sbjct: 483 DEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + ++ PR+  M I P +I++VIG GG  IR + E+T   ++IDDDGTVKIA++   
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGN 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +A    I  I    EVN+IY G+V +V+DFGAFV   G ++GLVHISQ++ ERV + +
Sbjct: 603 AAKAVMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           D +  G  V VK+++ D +G+I+L+MK ++
Sbjct: 663 DYLTVGQEVQVKVVEIDRQGRIRLTMKDIN 692


>gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1]
          Length = 708

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 481/697 (69%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISSEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N]
 gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N]
          Length = 718

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/697 (47%), Positives = 482/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V Y+ GQY+LNP   + + S +DL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVAYVEGQYLLNPTASQLKSSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSE+++L  ++FGH + +  I AI  L +   K          ++
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPEWTWSPAAKNE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-----HSSWNEGEIVS 293
                     +E L  +  I EK  R  ++ ++  ++ +  + +       + +   + +
Sbjct: 241 ALIAAVTAAAQEGLSAAYQIREKQARTTKLREVYAEVSAKLAEQAAAAGQDAPDGVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+R++ PVL
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+   F YT+RIVSEITES+GSSSMA+VCG SLA+MDAGVPI+  VAG+AMGL+ +   F
Sbjct: 421 PKPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMRESLDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS    + + A+  I  +T   EV ++Y G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDEGQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ D++G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADEKGRLRLSVKAI 697


>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 735

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/689 (47%), Positives = 465/689 (67%), Gaps = 4/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V   E E AGR   LETG++ARQ+  AV   YGETVVLATV   +  K+  DFFPLTVNY
Sbjct: 2   VVRHEFEVAGRRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E+ IL SR+IDR IRPLF + ++N+ Q++  V+  D +
Sbjct: 61  EERLYAVGKIPGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            +P + +M+  SA+L +S +PF GP+ G  V  ++GQ+V+NP +++ ++  L L V+GT+
Sbjct: 121 CAPEIAAMIGTSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DA++MVE  ANQ+ E++VL+AI++GH   + + + I+  A+    +   ++  K   +LE
Sbjct: 181 DAIVMVEAGANQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELE 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             + +   + +  +   P+K  R + + +L  +++ +F        E +I  V   I  +
Sbjct: 241 AAVREYATDKVSAAVRNPDKLAREEALANLNAEVLEHFKETFPE-KEADIAEVMHTILKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR  +L + +R DGR  + +R IS +VGLL RTHGS+LF RG TQA+ V TLG+  DEQ
Sbjct: 300 RVREAILREGIRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   + N +M HYNF P + GE   + APSRR+IGHG L  RA+ PV+P   +FPY
Sbjct: 360 LLDGLELEKSNRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEI ES+GS+S A++CGS++ALMDAGVPI  PVAGIAMGLVK+GD   ILSDI G
Sbjct: 420 AIRVVSEILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAILSDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT+ G+TA+QMD+KI GI  +I+  AL+QA+ GR++IL++M + +SE
Sbjct: 480 IEDHLGDMDFKVAGTERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L +F PRV  + I PD+IR+VIG GG+VI  I+E+TG K++I+ DG V I S+   
Sbjct: 540 PRADLSKFAPRVITVKIHPDKIRDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +   AREM+ +I    EV   Y G+V +V  +GAFV     ++GLVHISQL   RVAK  
Sbjct: 600 QANRAREMVENIVRDVEVGATYTGKVTRVEKYGAFVEILPGKEGLVHISQLDLNRVAKVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV + GDT+ VK+ + D++G+I LS K V
Sbjct: 660 DVCQVGDTLTVKVTEIDNQGRINLSRKEV 688


>gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
           493]
 gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           Dugway 5J108-111]
 gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
           331]
 gi|81629147|sp|Q83D87|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610292|sp|A9KFK6|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610293|sp|A9ND62|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493]
 gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111]
 gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           331]
          Length = 696

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/696 (48%), Positives = 475/696 (68%), Gaps = 6/696 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    +  ETG +ARQ+ GAV+   G+TV+L +VV  +  ++G+DFFPLTV
Sbjct: 1   MNKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D
Sbjct: 61  NYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +    + +++ ASAA+ LSG+PF G +  A+V Y  G+Y+LNP LDE + S LDL V+G
Sbjct: 121 SKVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DAVLMVE EA +L E V+L A++ GH   +  I+AI++  +         +    +  
Sbjct: 181 TRDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW----NEGEIVSVF 295
           LE+ + +  +  L+ +  I EK  R  QI  ++ ++++  ++E        NE E+  +F
Sbjct: 241 LEKWVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIF 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +++ ++VR  +L  + R+DGRD++TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLG
Sbjct: 301 HELERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L G ++ +F+ HYNF P   GEV  M  P RREIGHGRLA+RA+ PV+P 
Sbjct: 361 TERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPT 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP   PVAGIAMGL+K+ D + +
Sbjct: 421 LDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM  AL QAK GRLHIL+ M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +KVL + R Q+ +  P+   M I P++IR+VIG GG VIR I E T   ++I DDGT+KI
Sbjct: 541 NKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+ +  E EAA+  I  +T   E+ K+Y+G VVK+ DFGAFV       GLVHISQ++ E
Sbjct: 601 AAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV    D ++EG  + VK+++ D +G+++LSMK +D
Sbjct: 661 RVENVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696


>gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
           129PT]
 gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
           2336]
 gi|123031253|sp|Q0I2T0|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037307|sp|B0UTJ5|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT]
 gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336]
          Length = 713

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/697 (48%), Positives = 481/697 (69%), Gaps = 2/697 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  +
Sbjct: 61  NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + A    K      + + +  
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQIVIEAIKEFAAEAGKPRWDWTAPEANTI 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L E++  + +  L  +  I EK  R +QID +K  +++  ++E  + +EG+I+ +F  ++
Sbjct: 241 LIEKVKSIAENRLGDAYRITEKQARYEQIDLIKADVITQVTAEDETISEGKIIDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  +L  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRILRGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  ++F
Sbjct: 361 AQIIDELTGEKTDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDNFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I P +I++VIG GG  +R + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATVRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++     I  IT   EV  +YKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 KNAVQEVMSRIEDITAEVEVGVVYKGKVTRLADFGAFVALVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            SD +  G  V VK+L+ D +G+I+L+MK + ++  K
Sbjct: 661 VSDYLAIGQEVIVKVLEIDRQGRIRLTMKELAKDQTK 697


>gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS155]
 gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS155]
          Length = 703

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/691 (49%), Positives = 475/691 (68%), Gaps = 2/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTVN
Sbjct: 5   NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVN 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D 
Sbjct: 65  YQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           +  P ++SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+GT
Sbjct: 125 QIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240
             AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +    + L
Sbjct: 185 AGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDADL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++ ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++ 
Sbjct: 245 VAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 305 KVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+FP
Sbjct: 365 QKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 425 YSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + + 
Sbjct: 485 GDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIG 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+ 
Sbjct: 545 SHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA  
Sbjct: 605 EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           SD ++    V VK+++ D +G+++LS+K   
Sbjct: 665 SDHLELNQEVAVKVMEVDRQGRVRLSIKEAQ 695


>gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani
           ATCC 19707]
 gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
 gi|123593842|sp|Q3J9C0|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani
           ATCC 19707]
 gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
          Length = 695

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/693 (50%), Positives = 480/693 (69%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M  +  V IE+  R L LETG IARQ+ GAV+  YGETVVL TVV  +   +G+DFFPLT
Sbjct: 1   MTPIKKV-IEYGDRSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GKIPGG+ +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  
Sbjct: 60  VNYQERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+ P + S++ ASAAL LSG+PF  P+  A+V YI+GQYVLNP L + + S LDL V+
Sbjct: 120 DSENDPDIPSLIGASAALALSGIPFTTPIAAARVGYIDGQYVLNPTLGQMEKSALDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA +L E+++L +++F H E + VI+AI +LA+   K         +  
Sbjct: 180 GTEKAVLMVESEAQELPEEIMLGSVMFAHQEMQVVIQAIRELAEEAGKPAWDWKPPIEEE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
            L+  + ++ +   + +  I  K  R   + +L+  +V      E+S W+  +++     
Sbjct: 240 DLKSAVQEVGEARAQEAYQIRSKQERQASLAELRNSIVESLVPEENSRWSREQVLEAIGA 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ ++VR  +L    R+DGRD+  +R I+   GLL RTHGS+LF RG+TQ++V  TLGT 
Sbjct: 300 LEKRLVREQILSGGERIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTE 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D++ G +R  FM+HYNF P   GE   +G+P RREIGHGRLA+R+++ V+P   
Sbjct: 360 RDAQVIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNGVVPDEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSEITES+GSSSMATVCG+SL+LMDAGVPI  PVAGIAMGL+K+ D F +LS
Sbjct: 420 SFPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEKDRFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM  AL QA+ GR +IL +M++
Sbjct: 480 DILGDEDHLGDMDFKVAGTEKGITALQMDIKIDGITEEIMRTALSQAREGRFYILQKMNE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++S  R ++ E+ PR+ +  I P++IR+VIG GG  IR + E+TG  ++I DDGTVKI S
Sbjct: 540 IISTPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A+ + A+  +  I    EV KIY+G+V ++MDFGAFV     +DGL+HISQ+S ERV
Sbjct: 600 ADKADGQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              SD + EGD + VK+L+ D +G+++LS+K +
Sbjct: 660 KNVSDKLSEGDVIRVKVLEVDKQGRVRLSVKAI 692


>gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 704

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/690 (49%), Positives = 474/690 (68%), Gaps = 2/690 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  K+GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP E E LI+R+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VIE I  LA    K      +   ++
Sbjct: 181 GTEGAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIENIKALAAEAGKPRWEWTAPAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  +  +  I EK  R  QID +K  +++   +E  S N GEI  V   +
Sbjct: 241 ALHARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAALQAEDESLNAGEIADVLGSL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G Q + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P+  +
Sbjct: 361 DAQNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I P++I++VIG GG VIR + ++TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DNEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K +D ++ G  V VK+L+ D +G+++LS+K
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIK 690


>gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS223]
 gi|254782734|sp|B8E6N7|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS223]
          Length = 699

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/692 (49%), Positives = 475/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T  AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +    + 
Sbjct: 181 TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQ 692


>gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           Tohama I]
 gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           parapertussis 12822]
 gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
           Tohama I]
 gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella
           parapertussis]
 gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           CS]
          Length = 719

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/697 (47%), Positives = 479/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG +ARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + N+ QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSE+++L  ++FGH + +  I AI  L +   K          ++
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDWDWQPAPKNE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
                     +E L  +  I EK  R  ++ ++   + +  + + +   +       + +
Sbjct: 241 ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+ P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP +  VAG+AMGL+ D   F
Sbjct: 421 PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS    + + A+  I  +T   EV +IY G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAI 697


>gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           bronchiseptica RB50]
 gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella
           bronchiseptica RB50]
          Length = 719

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/697 (47%), Positives = 479/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG +ARQ+ GAVL +  +TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + N+ QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSE+++L  ++FGH + +  I AI  L +   K          ++
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQTAINAIHDLVRDAGKPDWDWQPAPKNE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
                     +E L  +  I EK  R  ++ ++   + +  + + +   +       + +
Sbjct: 241 ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+ P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP +  VAG+AMGL+ D   F
Sbjct: 421 PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS    + + A+  I  +T   EV +IY G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAI 697


>gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
           albensis VL426]
          Length = 709

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/697 (48%), Positives = 481/697 (69%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVAIPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + EG  V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS195]
 gi|304410260|ref|ZP_07391879.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS183]
 gi|307302029|ref|ZP_07581787.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           BA175]
 gi|187611316|sp|A3D7K1|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037315|sp|A9KZW6|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS195]
 gi|304351669|gb|EFM16068.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS183]
 gi|306914067|gb|EFN44488.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           BA175]
 gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS678]
          Length = 700

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/692 (49%), Positives = 475/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T  AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +    + 
Sbjct: 181 TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQ 692


>gi|323705394|ref|ZP_08116969.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535296|gb|EGB25072.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 700

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/694 (44%), Positives = 454/694 (65%), Gaps = 3/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E++ AGR L ++TG++A+ ++G+ L  YG+TVVL T    +  ++G DFFPL+V+Y+
Sbjct: 3   KIFELDLAGRKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +PTE  IL SR+IDR IRPLF   Y+N+ QVI  V+  D + 
Sbjct: 63  ERLYSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183
            P +V+M+ +S AL +S +PF GP     V  ++G +++NP L+  ++  L L VSGT+D
Sbjct: 123 QPEIVAMIGSSVALSISDIPFNGPTGSVSVALVDGNFIINPDLEAREKSDLHLTVSGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A++MVE  AN++ E+V+LDAI++ H   K ++E I  + K        +   +    LE+
Sbjct: 183 AIMMVEAGANEVPEEVMLDAIMYAHEYIKQIVEFIEGIVKEVGLPKAEVIVHEIDDNLEQ 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ +   E +  +    EK  R   ID ++++++ +F  E+   N  +I  V   I  + 
Sbjct: 243 QVREFATEKIYNALRTEEKKERNDNIDKVEEEVLEHFKDEYPD-NLEDIDEVLYTITKEQ 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++ ++K+R+DGR  + +R I+  VG+L RTHGS++F RG TQ + V TLG   D Q 
Sbjct: 302 MRKMITEEKIRVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   +M HYNF P + GE   +  P RREIGHG LA RA+ P++P   +FPYT
Sbjct: 362 LDGLGDEESKRYMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   IL+DI G 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDIVSILTDIQGI 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT+ GITA+QMD+KI GI  +I+ +AL++A++GRL ILN+M + + E 
Sbjct: 482 EDFLGDMDFKVAGTEKGITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLETIKEP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + PR+  + + P++IR++IG GGK I  I+  TG K++I+DDG V I+S+ L  
Sbjct: 542 RKELSPYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVKIDIEDDGRVFISSTDLKA 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E A+ +I +IT   EV  IY G+V ++  FGAFV     ++GLVHIS+L  + V K  D
Sbjct: 602 GEKAKMIIEAITKDVEVGSIYLGKVTRLASFGAFVEIAPGKEGLVHISKLDKKHVNKVED 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           VV  GD + VK+ + D +G+I LS K       K
Sbjct: 662 VVNIGDEILVKVTEIDKQGRINLSRKDALPEETK 695


>gi|167465515|ref|ZP_02330604.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 705

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/698 (46%), Positives = 453/698 (64%), Gaps = 5/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  VE++ AGRPL LETGR+A+Q++ +VL  YG+TVVL TV      KD  DFFPLTVNY
Sbjct: 2   VKIVEMDLAGRPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKD-LDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QV+  VM  D E
Sbjct: 61  EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQE 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            SP + +M   SAAL +S +PF GP+ G  V  I+G++V+NP  ++  +  + L V+GT+
Sbjct: 121 CSPEIAAMTGVSAALSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDIHLTVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA++MVE  A ++ E+V+L+AI+FGH + K ++    +  +      + +       ++ 
Sbjct: 181 DAIMMVEAGAAEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEEAGVPKMEVQLHQVDEEIN 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
            ++ +     +  +  +PEK+ R + ID +  +   +F+S  E       ++  V  DI 
Sbjct: 241 AKVREFASAKMIEAIQVPEKHARQEAIDLVSAETEEHFASLLEDDPAKLKDVKEVLHDIV 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +KVR DGR  + +R I   + LL RTHGS LF RG TQA+ V TLG   D
Sbjct: 301 KEEVRRLITHEKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   + AP RREIGHG L  RAI  V+P   +F
Sbjct: 361 VQILDGLDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGARAIEQVIPSEEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S LALMDAGVPI  PVAGIAMGL+KDG  F IL+DI
Sbjct: 421 PYTIRLVSEVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKDGQHFSILTDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI GI  +I+  AL QAK GR+ IL +M   +
Sbjct: 481 QGMEDHLGDMDFKVAGTAKGVTALQMDIKINGIDRDILHQALTQAKEGRMFILEKMLSRI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+ + +L  + P++  M+I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+
Sbjct: 541 SDPKKELSPYAPKILTMSIHPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+E+I  I     V + Y G V ++  FGAFV     ++GLVHISQLS ERVAK
Sbjct: 601 EQMNQKAKEIIEGIVREVVVGETYLGTVKRIEKFGAFVEVLPNKEGLVHISQLSIERVAK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVV  GD + VK+ + D++G+I LS K    N  KP
Sbjct: 661 VEDVVSIGDKITVKVTEIDNQGRINLSRKATLVNQEKP 698


>gi|15836844|ref|NP_297532.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           9a5c]
 gi|9105050|gb|AAF83052.1|AE003877_7 polynucleotide phosphorylase [Xylella fastidiosa 9a5c]
          Length = 719

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/694 (50%), Positives = 478/694 (68%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ++GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 22  KITKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 81

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 82  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 141

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL L+G+PF+GP+  A++ Y +GQY+LNP + E + S L+L V+GT 
Sbjct: 142 IDGDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPTVSELKKSQLELVVAGTA 201

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   +       L 
Sbjct: 202 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKNDALV 261

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
             + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++
Sbjct: 262 IALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELE 321

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D
Sbjct: 322 YRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARD 381

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +F
Sbjct: 382 GQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEF 441

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 442 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 501

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L
Sbjct: 502 LGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKAL 561

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS +
Sbjct: 562 AAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIIIASVN 621

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +
Sbjct: 622 NAAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVER 681

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 682 VGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 715


>gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans
           SPH-1]
 gi|226702646|sp|A9BNB8|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans
           SPH-1]
          Length = 753

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/697 (47%), Positives = 480/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   IFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A SAAL +SG+PF GP+  A+V +ING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIAALIATSAALSVSGIPFNGPIGAARVGFINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QL EDV+L A++FGH + +  I+AI +L +   K      +     
Sbjct: 183 GTEAAVLMVESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREAGKPVWDWVAPAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L  +++ +  E LR +  I  K  R +   +    + +  +++   ++  ++  +  DI
Sbjct: 243 ELIAKVAALGDEALRTAYQIRNKQSRTQACREAYAAVKAGLTAQGVEFDGVKVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 303 EARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   +
Sbjct: 363 DAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG +++I +DGT+ IASS
Sbjct: 543 MGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIASS 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   E+ KIY+G V K++DFGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 DAAKADEAKRRIEEITAEVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + +D ++EG  + VK+++ D++G++KLS+K + +   
Sbjct: 663 RVADYLQEGQIIKVKVMETDEKGRVKLSLKALTERPA 699


>gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS185]
 gi|187611290|sp|A6WRG3|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS185]
          Length = 700

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/692 (49%), Positives = 475/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +    G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YI+G+YVLNP + +   S L+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T  AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +    + 
Sbjct: 181 TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  L  +  I  K  R  Q+  +K        + + S +  E+ ++   ++
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P  A+F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+ ++ I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQ 692


>gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM
           12804]
 gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii]
          Length = 719

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/697 (47%), Positives = 476/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKSFQYGQHTVVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+++ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSQMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AVLMVE EA QLSEDV+L  +++GH + +  I AI  L +   K       +  ++
Sbjct: 181 GTENAVLMVESEAKQLSEDVMLGGVVYGHEQMQAAINAIHDLVRDAGKPDWEWQPEPKNE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
                     +E L  +    +K  R   + ++   + +  + + ++  +       + +
Sbjct: 241 ALIAAVTAAAQEKLVAAYQERQKQARTALLRNVYADVHAALAEQAAAAGQDAPDAVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++A++VR  +L+ + R+DGRD+ TVR I  ++G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 ILFDLEARIVRGQILNGEPRIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ +D+L G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  +L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALVSLL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+ D   F
Sbjct: 421 PAHEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+ GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTQNGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L  SR +L  F PR+  + I P++IR+VIG GG  IR + E+TG +++I DDGT+
Sbjct: 541 KMREALEGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A+ + A+  I  +T   EV ++Y G V++++DFGA V     RDGL+HIS+++
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             R+A  +DV+K G  V VK+++ DD+G+++LS+K +
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSVKAI 697


>gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
 gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
          Length = 700

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/698 (48%), Positives = 476/698 (68%), Gaps = 2/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 ++    + LETG +ARQ+  AV+ +  +T V  +VV  ++  + +DFFPLTVNY
Sbjct: 3   PIVKSFQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+TYA GKIPGG+ +RE RP+E E LISR+IDR +RPLF   +KNE QVI  V+  + E
Sbjct: 63  QEKTYAAGKIPGGFFKREGRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            +P +V+M+A SAAL +SG+PF GP+  A+V YI+GQY+LNP   E +   L+L VSGT+
Sbjct: 123 INPDIVAMIATSAALSISGMPFNGPIGCARVGYIDGQYLLNPTKTELEASDLNLVVSGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
           +AVLMVE EA  LSEDV+L A+++GH + + V+ AI++ A   A+      +      L+
Sbjct: 183 NAVLMVESEAGILSEDVMLGAVVYGHEQQQVVVSAINEFAAEVARPKWDWSAPVRNDALD 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++   +  +  +  I +K  R   +  +  ++     +   +    +I     D++  
Sbjct: 243 ALIATEAQSRIEEAYQISDKGDRYDALKIITSEVKEKLLAADETLEAKQIGEYLHDLEKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT ++  + R+DGRD E+VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+ D Q
Sbjct: 303 VVRTRIIKGEPRIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPDLEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI G
Sbjct: 423 TVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGDEFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  RLHIL+ M + +SE
Sbjct: 483 DEDHLGDMDFKVAGTSEGITALQMDIKIEGITKEIMQIALNQAKAARLHILSVMDEAISE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + IP D+IR+VIG GG  IR + E+TG  + I+DDGTVKIA++S  
Sbjct: 543 GRADISEFAPRIHTIKIPTDKIRDVIGKGGATIRALCEETGTTIEIEDDGTVKIAATSAE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + E A   I+++T   EV  IY G+VV++ DFGAFV+    +DGLVHISQ+  ERV K S
Sbjct: 603 QAEDAINRIKTLTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVS 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           D +KEG  V VK+L+ D +G+++LS+K   +    P+ 
Sbjct: 663 DYLKEGQEVKVKVLEVDRQGRVRLSIKEAAEKKDAPVA 700


>gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
           21326]
 gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
           21326]
          Length = 706

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/700 (48%), Positives = 478/700 (68%), Gaps = 3/700 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K SD + EG  V VK+L+ D +G+++LSMK   + T + 
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKTDEE 700


>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 742

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/690 (48%), Positives = 476/690 (68%), Gaps = 2/690 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D    + ++    + LETG IARQ+  AV+A+  +T V   VV  + +K+GQDFFPLTVN
Sbjct: 35  DPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLTVN 94

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + 
Sbjct: 95  YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 154

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT 181
           + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + ++ Q  LDL V+GT
Sbjct: 155 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGT 214

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             AVLMVE EA+ L+E+ +L A+++GH + + VIEAI +L     K      + + +  L
Sbjct: 215 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTDL 274

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++  + +  L  +  I EK  R +QID +K  +V+  ++E    +EG+I+ +F  +++
Sbjct: 275 INKVKALAEARLGDAYRITEKQARYEQIDAIKADVVAQITAEDEEVSEGKIIDIFTALES 334

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D 
Sbjct: 335 QIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDA 394

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FP
Sbjct: 395 QIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFP 454

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 455 YVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSDIL 514

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + + 
Sbjct: 515 GDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIP 574

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+   
Sbjct: 575 APRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVDK 634

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++     I  IT   E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K 
Sbjct: 635 NAVQDVMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKV 694

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SD ++ G  V VK+++ D +G+I+L+MK +
Sbjct: 695 SDYLQVGQEVMVKVVEIDRQGRIRLTMKEL 724


>gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437]
          Length = 697

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/693 (45%), Positives = 444/693 (64%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    E E+AGR L +E G+ A Q++GAVL  YG+T V+AT       KD   FFPLT
Sbjct: 1   MMEPTIFETEFAGRRLTMEVGKYANQANGAVLVRYGDTAVMATATASDEPKD-LGFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + Y+N+ QV+  VM  
Sbjct: 60  VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + S  + +M+ AS AL +S +PF GP+ G  V  +NG++VLNP +++ ++  L L V+
Sbjct: 120 DQDCSTEIAAMIGASTALSISDIPFAGPIAGVIVGRVNGKWVLNPSVEQAEKSDLHLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+  + MVE  A+++ E+V+L+ I+FGH   K +I    K+     KE +  D     S
Sbjct: 180 GTKHGINMVEAGADEVPEEVMLEGILFGHEAIKEMIAFQEKIVGQVGKEKMEPDLHQVDS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
           +LE  + ++    +  +  + EK  R   I+ +++ ++   + E    ++  EI  V + 
Sbjct: 240 ELERRVRELSTAPMAKAAQVGEKQERQDAINQVRESVLQQLAGEDPEADQTKEIEEVLDT 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  + VR ++L++K R DGR  E +R ++++VG+L RTHGS  F RG TQ + V TLG  
Sbjct: 300 VLKEEVRRMILEEKKRPDGRSPEEIRPLTSEVGILPRTHGSGHFRRGQTQVLSVCTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   
Sbjct: 360 GDVQILDGLDLEESKRFMHHYNFPPYSVGESRPMRGPGRREIGHGALGERALEPVIPSEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+ ES+GS+S A++C S+LALMDAGVPI  PVAGIAMGLVK+GD   +L+
Sbjct: 420 EFPYTIRLVSEVLESNGSTSQASICASTLALMDAGVPIKDPVAGIAMGLVKEGDQVTVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI  I   ++  ALQQA R R  +L+ M+ 
Sbjct: 480 DIQGMEDHLGDMDFKVAGTRKGVTALQMDIKIEEIDREVLSQALQQAHRARHVLLDNMTA 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L E R +L    P++  + I PD+IR VIG  G+VI  I+++TG K++I+ DG + IAS
Sbjct: 540 TLGEPRRELSPHAPKILTLKIHPDKIREVIGPSGRVINKIIDETGVKIDIEQDGRIFIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A+ E A+ +I  +     V +IY G V +V  +GAFV     ++GLVHISQL  ERV
Sbjct: 600 ADPAQNEKAKSIIEDLVREVVVGEIYIGTVKRVEKYGAFVEILPGKEGLVHISQLDKERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K SDVV  GD + VK+ + D++G+I LS K +
Sbjct: 660 NKVSDVVNLGDQIQVKVTEIDNQGRINLSRKAI 692


>gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
 gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
          Length = 704

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/698 (53%), Positives = 493/698 (70%), Gaps = 11/698 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++W    L LETG++ARQ+DG V+AT GET V+A V + R  K GQDFFPLTV+YQE+ Y
Sbjct: 1   MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +KNE  V+  V+ HDL + P +
Sbjct: 61  AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------SLDLFVSGT 181
           V+M+AASAAL LSG PF GP+  A+V +  G+YVLNP +D+ Q         LDL V+GT
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQRLDLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +DAV+MVE EA +L+E  +L A+ F H + +PVI+ I  LA+  AKEP      D+S+L 
Sbjct: 181 KDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDFQPADYSELF 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +    +E +R +  I +K  R   +   ++ + +  S E     +  + S  + ++A 
Sbjct: 241 AAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQLE--DANLGSALKKLEAG 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  ++    R+DGR +  VR I ++ G+L RTHGS+LF RG+TQA+ V TLGT +DEQ
Sbjct: 299 ILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQ 358

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++D+L G  +++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FPY
Sbjct: 359 FIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPY 418

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDIS 480
           T+R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGL+ + D  + ILSDI 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYAILSDIL 478

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGTD GIT++QMD+K+ GI+  IM  AL QAK GRLHIL EM+K LS
Sbjct: 479 GDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKALS 538

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E+        PR+E M IP D+IR VIG GGKVIR IVE +GAKV+I+DDG +KIAS+  
Sbjct: 539 ETNA-FSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKIASADG 597

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A +MI SI   PE   +Y G+VVK++DFGAFV+F G RDGLVH+SQ+   R+   
Sbjct: 598 TAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHP 657

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SDV+KEG  V VKLL FDDRGK++LSMK+VDQ TG+ I
Sbjct: 658 SDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEI 695


>gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila
           L48]
 gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Pseudomonas entomophila L48]
          Length = 701

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 475/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +      ++    + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-F 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA   AK        D  
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIKAVKELAAEAAKPTWDWKPADKN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           S L + +     E +     I  K  R  ++ +L+ + V+ FS E    + GE+  +F +
Sbjct: 241 SALFDAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSAGEVKDIFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ ESR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGESRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA++ I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +DV+KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDVLKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           DSM 4166]
          Length = 701

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/693 (49%), Positives = 486/693 (70%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +S    + FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GP+  A+V +     Y+LNP  ++ +  SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-F 237
           +GT+DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA    K      +    
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L + +       +  +  I  K  R  ++D+L++++V+ FS E    + G++   F +
Sbjct: 241 TALLDAIRSEFGAAISEAYTITIKQQRYARLDELREQVVAKFSGEEGQPSAGDVKDAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+++SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 VIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAA++ + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R+
Sbjct: 601 ETKEAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +DV+KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDV 693


>gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           86-028NP]
 gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittAA]
 gi|81336747|sp|Q4QNV7|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           86-028NP]
 gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittAA]
          Length = 709

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/699 (47%), Positives = 475/699 (67%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEA+ + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAVKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +E +IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISESKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 712

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/691 (48%), Positives = 476/691 (68%), Gaps = 2/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SSAAKNVMVRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SD ++ G  V VK+++ D +G+I+L+MK +
Sbjct: 661 VSDYLQVGQEVTVKVVEIDRQGRIRLTMKDL 691


>gi|156975660|ref|YP_001446567.1| polynucleotide phosphorylase/polyadenylase [Vibrio harveyi ATCC
           BAA-1116]
 gi|187611334|sp|A7MZI2|PNP_VIBHB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|156527254|gb|ABU72340.1| hypothetical protein VIBHAR_03393 [Vibrio harveyi ATCC BAA-1116]
          Length = 710

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/700 (48%), Positives = 478/700 (68%), Gaps = 3/700 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++     A       +  + 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K SD + EG  V VK+L+ D +G+++LSMK   +   + 
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEE 700


>gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           334]
 gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           CbuK_Q154]
 gi|226702641|sp|B6J6S7|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           334]
 gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
           CbuK_Q154]
          Length = 696

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/696 (48%), Positives = 475/696 (68%), Gaps = 6/696 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    +  ETG +ARQ+ GAV+   G+TV+L +VV  +  ++G+DFFPLTV
Sbjct: 1   MNKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D
Sbjct: 61  NYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +    + +++ ASAA+ LSG+PF G +  A+V Y  G+Y+LNP LDE + S LDL V+G
Sbjct: 121 SKVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DAVLMVE EA +L E V+L A++ GH   +  I+AI++  +         +    +  
Sbjct: 181 TRDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW----NEGEIVSVF 295
           LE+ + +  +  L+ +  I EK  R  QI  ++ ++++  ++E        NE E+  +F
Sbjct: 241 LEKLVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIF 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +++ ++VR  +L  + R+DGRD++TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLG
Sbjct: 301 HELERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L G ++ +F+ HYNF P   GEV  M  P RREIGHGRLA+RA+ PV+P 
Sbjct: 361 TERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPT 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP   PVAGIAMGL+K+ D + +
Sbjct: 421 LDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM  AL QAK GRLHIL+ M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +KVL + R Q+ +  P+   M I P++IR+VIG GG VIR I E T   ++I DDGT+KI
Sbjct: 541 NKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+ +  E EAA+  I  +T   E+ K+Y+G VVK+ DFGAFV       GLVHISQ++ E
Sbjct: 601 AAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV    D ++EG  + VK+++ D +G+++LSMK +D
Sbjct: 661 RVENVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696


>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
 gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
          Length = 709

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/699 (47%), Positives = 475/699 (67%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K      + + +  
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I+++IG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GL+HISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
           aphrophilus NJ8700]
          Length = 709

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/691 (49%), Positives = 479/691 (69%), Gaps = 2/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K      + + +  
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++ F++E     EG+I+ +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDVIKADVIAQFTAEDEEVAEGKIIDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILSVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++     I  IT   E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 KNAVQDVMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SD ++ G  V VK+++ D +G+I+L+MK +
Sbjct: 661 VSDYLQVGQEVMVKVVEIDRQGRIRLTMKEL 691


>gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus bovienii SS-2004]
 gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus bovienii SS-2004]
          Length = 714

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/695 (48%), Positives = 468/695 (67%), Gaps = 6/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + +ETG +ARQ+  AV+    +T V  TVV  + +K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP E E L++R+IDR +RPLF + + NE Q+I  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           +   +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE + S LDL V+
Sbjct: 121 NPLVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  AVLMVE EA  L+E+ +L A++FGH + + VI+ I+ L     KE      +  + 
Sbjct: 181 GTAGAVLMVESEAELLTEEQMLGAVVFGHEQQQIVIDHINALVAETGKEKWDWAPESINQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM----VSYFSSEHSSWNEGEIVSV 294
            L + ++++ +  L  +  I EK  R  Q++ +K+++    V+    +     + E++ V
Sbjct: 241 PLHDRVAELAESRLGDAYRITEKQERYAQVNTIKEEVSAIIVAEAVEKGVELEKSEVLDV 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
              ++  VVR  +L  + R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TL
Sbjct: 301 LSVLEKNVVRGRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P
Sbjct: 361 GTERDAQVIDELMGERADRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F+
Sbjct: 421 TANEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFV 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI+  IM +AL QAK  RLHIL  
Sbjct: 481 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGARLHILGV 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +   R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVK
Sbjct: 541 MEQAIQSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA++   +   A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ 
Sbjct: 601 IAATDSDKAHHAIRRIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +RV K +D ++    V VK+L+ D +G+I+LSMK 
Sbjct: 661 KRVEKVTDYLQLAQEVPVKVLEIDRQGRIRLSMKE 695


>gi|218710441|ref|YP_002418062.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus
           LGP32]
 gi|254782746|sp|B7VJH3|PNP_VIBSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218323460|emb|CAV19637.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus LGP32]
          Length = 706

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/699 (49%), Positives = 485/699 (69%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL +SG PF GP+  A+V +I+G+ VLNP   E + S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A   A      ++   +
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L+ +++++ +  L  +  I EK  R +Q+  +K   V    ++  + +E EI  +   
Sbjct: 241 TELKAQVAELAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK   +   +
Sbjct: 661 EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAE 699


>gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
 gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
          Length = 700

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/689 (45%), Positives = 458/689 (66%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + + EIE  GR L +E G++A+Q++GAVL  YG+TVVL T     + ++G DFFPLTV+Y
Sbjct: 12  MQSFEIELGGRKLVIEHGKMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDY 71

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE RP+ + IL +R+IDR IRPLF   ++N+ Q++  V+  + +
Sbjct: 72  EEKMYAVGKIPGGFIKREGRPSNDAILCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQD 131

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P + +M+ AS AL +S +PF GP+ G +V YI+G++++NP   +     L+L V+G+ 
Sbjct: 132 NPPEIAAMIGASCALTVSDIPFMGPIAGVRVGYIDGEFIINPTEQQRSVSELNLAVAGSY 191

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DAV+MVE  AN+LSE+VVLDAI+FGH E + ++E    +   C KE I+      S+ LE
Sbjct: 192 DAVMMVEAGANELSEEVVLDAILFGHAEIRRLVEFQQNIRNTCGKEKIIPSIFTLSEELE 251

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++    +E L  +    +K  R   I  +K + + YF  E+      EI  +   I+  
Sbjct: 252 SKVRSYAEERLDAATRNSDKLARDADIAGIKAEAIEYFVEEYPDA-AKEIAQILYKIEKG 310

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++  +K+R DGR  + +R +S +VG+L R HGS LF RG TQ + V TLG+  DEQ
Sbjct: 311 IVRHMITHEKIRPDGRALDEIRPVSCEVGILPRAHGSGLFTRGQTQVLTVTTLGSIGDEQ 370

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       ++  YNF   + GE   M +P RREIGHG LA RA+ P++P   +FPY
Sbjct: 371 IIDGLGSETTKHYLHQYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEEFPY 430

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSM ++CGS+L+LM AGVPI +PV+GIAMGLV+DGD++ IL+DI G
Sbjct: 431 TIRLVSEILESNGSSSMGSICGSTLSLMCAGVPIKRPVSGIAMGLVRDGDNYSILTDIQG 490

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL QAK+GR  IL +M + + +
Sbjct: 491 MEDALGDMDFKVAGTSKGITAIQMDIKIAGITRDILAAALAQAKQGRAFILGKMLECIDK 550

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              +L  + PRVE + I  D+IR+VIG GGKV+R I+++TG  ++I +DG + I S +  
Sbjct: 551 PAEELSPYAPRVETITIDVDKIRDVIGTGGKVVRKIIDETGVDIDIHEDGNIFITSPNTE 610

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++ AR+MI  I    EV ++Y G+V + + FGAFV     ++GL HISQL+  RV    
Sbjct: 611 AMDRARKMIEDIVREVEVGEVYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHRVESVE 670

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DVVK GD + VK+++ D++G+I +S K +
Sbjct: 671 DVVKIGDQLEVKVIEIDEKGRINVSHKAL 699


>gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
           20546]
 gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
           20546]
          Length = 710

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/691 (49%), Positives = 475/691 (68%), Gaps = 3/691 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQTVISAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I  +  ++     +E    N  EI ++F D
Sbjct: 241 TALTTKIAELAEAKLVEAYQITEKMARYDRIHTIAAEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 700

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/692 (43%), Positives = 453/692 (65%), Gaps = 3/692 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            E++ AG+ L ++TG++A+ ++G+ L  YG+TVVL T    +  ++G DFFPL+V+Y+ER
Sbjct: 5   FELDLAGKKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            Y+VGKIPGG+++RE +PTE  IL SR+IDR IRPLF   Y+N+ QVI  V+  D +  P
Sbjct: 65  LYSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAV 185
            +V+M+ +S AL +S +PF GP     V  ++G++++NP L   ++  L L VSGT+DA+
Sbjct: 125 EIVAMIGSSVALSISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDLHLTVSGTKDAI 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           +MVE  AN++ E+V+LDAI++ H   K +++ I  + K        +   +  S LE  +
Sbjct: 185 MMVEAGANEVPEEVMLDAIMYAHEYIKKIVDFIEGIVKEVGLPKAEVTIHEIDSNLERLV 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            +   E +  +    EK  R   ID ++++++ +F  E+   N  +I  V   I  + +R
Sbjct: 245 REFATEKIYNALRTEEKKERNDNIDKVEEEVLEHFKDEYPD-NLADIDEVLYTITKEQMR 303

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++K+R+DGR  + +R I+  +G+L RTHGS++F RG TQ + V TLG   D Q +D
Sbjct: 304 KMITEEKIRVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILD 363

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   +M HYNF P + GE   +  P RREIGHG LA RA+ P++P   +FPYT+R
Sbjct: 364 GLGDEESKRYMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIR 423

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+G+   IL+DI G ED
Sbjct: 424 LVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGETVSILTDIQGIED 483

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT+ GITA+QMD+KI GI  +I+  AL++A++GRL ILN+M + + E R 
Sbjct: 484 FLGDMDFKVAGTEKGITAIQMDIKIAGIDRDILSAALEKARKGRLFILNKMLETIKEPRK 543

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + PR+  + + P++IR++IG GGK I  I+  TG K++I+DDG V I+S+ L   E
Sbjct: 544 ELSPYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVKIDIEDDGRVFISSTDLKAGE 603

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+ +I +IT   EV  IY G+V ++  FGAFV     ++GLVHIS+L  + V K  DVV
Sbjct: 604 KAKMIIEAITKDVEVGAIYLGKVTRIASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVV 663

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             GD + VK+ + D +G+I LS K    +  K
Sbjct: 664 NIGDEILVKVTEIDKQGRINLSRKDALPDESK 695


>gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           CbuG_Q212]
 gi|226702642|sp|B6J0K5|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
           CbuG_Q212]
          Length = 696

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/696 (48%), Positives = 475/696 (68%), Gaps = 6/696 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    +  ETG +ARQ+ GAV+   G+TV+L +VV  +  ++G+DFFPLT+
Sbjct: 1   MNKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTI 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGGY +RE RPTE E L SR+IDR +RPLF K + NE QVI  V+  D
Sbjct: 61  NYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +    + +++ ASAA+ LSG+PF G +  A+V Y  G+Y+LNP LDE + S LDL V+G
Sbjct: 121 SKVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DAVLMVE EA +L E V+L A++ GH   +  I+AI++  +         +    +  
Sbjct: 181 TRDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW----NEGEIVSVF 295
           LE+ + +  +  L+ +  I EK  R  QI  ++ ++++  ++E        NE E+  +F
Sbjct: 241 LEKWVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIF 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +++ ++VR  +L  + R+DGRDS+TVR I+ +VG+L R+HGS+LF RG+TQA+VV TLG
Sbjct: 301 HELERRIVREQILTGQPRIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L G ++ +F+ HYNF P   GEV  M  P RREIGHGRLA+RA+ PV+P 
Sbjct: 361 TERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPT 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSEI ES+GSSSMA+VCGSSLALMDAGVP   PVAGIAMGL+K+ D + +
Sbjct: 421 LDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM  AL QAK GRLHIL+ M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +KVL + R Q+ +  P+   M I P++IR+VIG GG VIR I E T   ++I DDGT+KI
Sbjct: 541 NKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A+ +  E EAA+  I  +T   E+ K+Y+G VVK+ DFGAFV       GLVHISQ++ E
Sbjct: 601 AAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV    D ++EG  + VK+++ D +G+++LSMK +D
Sbjct: 661 RVENVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQID 696


>gi|28899226|ref|NP_798831.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838303|ref|ZP_01990970.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|260362211|ref|ZP_05775195.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260879079|ref|ZP_05891434.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260897750|ref|ZP_05906246.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|260900806|ref|ZP_05909201.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|81727008|sp|Q87M06|PNP_VIBPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28807450|dbj|BAC60715.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748292|gb|EDM59151.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088979|gb|EFO38674.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089536|gb|EFO39231.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308108195|gb|EFO45735.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308111467|gb|EFO49007.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           K5030]
          Length = 711

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/691 (48%), Positives = 474/691 (68%), Gaps = 3/691 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+ +++++ +  L  +  I EK  R  +I ++  ++     ++    +  EI ++F D
Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittEE]
 gi|187610272|sp|A5UAQ6|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittEE]
          Length = 709

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/699 (48%), Positives = 477/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L +++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADVLTEEQMLASVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12J]
 gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J]
          Length = 724

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/697 (49%), Positives = 484/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W G  +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+++L A+++GH + +  I AI  L +   K      +     
Sbjct: 183 GTERAVLMVESEAQQLSEEIMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++ K + +  +      +  E+ ++  ++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAAKLAEAGVEADGVEVDNILFEL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGSSLF RG+TQA+VV  LGT+ 
Sbjct: 303 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+ PVLP   +
Sbjct: 363 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPPADE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG SLALMDAGVPI   VAG+AMGL+ + + F +L+D
Sbjct: 423 FGYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL +M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L E  PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIGEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 603 SSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 663 QVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEG 699


>gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           ymp]
 gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina
           ymp]
          Length = 725

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/693 (48%), Positives = 478/693 (68%), Gaps = 5/693 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTV 61
           +    + ++    + LETGRIARQ+ GAVL T   +  VL TVV  ++    + FFPL+V
Sbjct: 25  NPVIKQFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSV 84

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+   
Sbjct: 85  HYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTS 144

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFVS 179
            ++ P + SM+  SAAL +SG+PF GP+  A+V +  +  Y+LNP  ++ +  SLD+ V+
Sbjct: 145 KKTDPDIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVVA 204

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA++L+ED +L A++F H E + VI+A+ + A    K      +    +
Sbjct: 205 GTETAVLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAANT 264

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
            L + +     E +  +  I  K  R  ++D+L++++++  + E    +   E+ + F +
Sbjct: 265 PLLDAIRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFGE 324

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  ++D K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 325 IEYRTVRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTA 384

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  +LP+  
Sbjct: 385 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKDD 444

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLV +G+ F +L+
Sbjct: 445 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLT 504

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL+QA   RL+IL +M++
Sbjct: 505 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQ 564

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 565 VISQSRTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 624

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAA++ + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS +RV
Sbjct: 625 ETKDAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRV 684

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +DV+KEG  V V +LD D+RG+IKLS+K V
Sbjct: 685 EKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDV 717


>gi|84387281|ref|ZP_00990302.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
 gi|84377928|gb|EAP94790.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
          Length = 706

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/699 (49%), Positives = 484/699 (69%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL +SG PF GP+  A+V +I+G+ VLNP   E + S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A   A      ++   +
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L+ ++++  +  L  +  I EK  R +Q+  +K   V    ++  + +E EI  +   
Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKSDTVEALIAQDENLDEREIRGMLGS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAQEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK   +   +
Sbjct: 661 EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAE 699


>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
 gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
          Length = 714

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/698 (47%), Positives = 476/698 (68%), Gaps = 2/698 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVN
Sbjct: 7   NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 66

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  + 
Sbjct: 67  YQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 126

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT 181
           + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+GT
Sbjct: 127 QISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGT 186

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             AVLMVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K      + + +  L
Sbjct: 187 DKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDL 246

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  +++
Sbjct: 247 INKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALES 306

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D 
Sbjct: 307 QIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDA 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+FP
Sbjct: 367 QIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI 
Sbjct: 427 YVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSDIL 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + + 
Sbjct: 487 GDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIP 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + ++ PR+  M I P +I+++IG GG  IR + E+TG  ++IDDDGTVKIA+   
Sbjct: 547 APRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVDS 606

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +     I  I    E   IYKG+V ++ DFGAFV   G ++GL+HISQ++ ERV K 
Sbjct: 607 NAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKV 666

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 667 SDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 704


>gi|187611440|sp|Q9PGQ9|PNP_XYLFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 700

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/694 (50%), Positives = 478/694 (68%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ++GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 63  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL L+G+PF+GP+  A++ Y +GQY+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPTVSELKKSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   +       L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKNDALV 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
             + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++
Sbjct: 243 IALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D
Sbjct: 303 YRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +F
Sbjct: 363 GQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L
Sbjct: 483 LGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS +
Sbjct: 543 AAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +
Sbjct: 603 NAAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVER 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 663 VGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium
           profundum SS9]
 gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum SS9]
          Length = 707

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/698 (49%), Positives = 481/698 (68%), Gaps = 4/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+A+  +T V  +VV  ++  +GQDFFPLTV
Sbjct: 1   MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            E +P +++M+A SAAL +SGLPF GP+  A+V +IN Q+VLNP   E ++  LDL VSG
Sbjct: 121 PEVNPDMITMIATSAALAISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLDLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T+DAVLMVE EA++LSE+ +L A+++GH++ + VI AI++ A   A       +    ++
Sbjct: 181 TKDAVLMVESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVVNAE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+  ++      L  +  I EK  R  ++  +K  +V+   +E  + +E E+  +   ++
Sbjct: 241 LKARVADKAATRLSDAYQITEKMARYDEVGSIKNDVVASLLAEDETLDERELRGMLSSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D
Sbjct: 301 KHVVRGRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +F
Sbjct: 361 AQIIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++ 
Sbjct: 541 GTHRDDISQFAPRIHTMKINSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATE 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + A   I  IT   EV +IY G+V++++DFGAFV   GA++GLVHISQ++ ERV K
Sbjct: 601 GAAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQNTG 695
            SD ++ G  V VK+L+ D +G+I+LSMK  V DQN  
Sbjct: 661 VSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQNPA 698


>gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           Rd KW20]
 gi|1172546|sp|P44584|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20]
          Length = 709

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/699 (48%), Positives = 477/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEXSEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|238918428|ref|YP_002931942.1| polynucleotide phosphorylase/polyadenylase [Edwardsiella ictaluri
           93-146]
 gi|259534121|sp|C5BFC1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase [Edwardsiella ictaluri
           93-146]
          Length = 707

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/693 (48%), Positives = 474/693 (68%), Gaps = 2/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  ++GQDFFPLT
Sbjct: 1   MLTPTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+ PGG+ RRE RP E E L +R+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VNYQERAYAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT +AVLMVE EA+ LSED +L A++FGH + + VIE I  LA    K      + + + 
Sbjct: 181 GTDNAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIENIKALAAEVGKPRWEWHAPEVNV 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  +++M +  L  +  I EK  R  ++D++K+ +++   +E  + + GEI  +   +
Sbjct: 241 ALQRRVAEMAEARLGEAYHITEKQARYAKVDEIKESVIADLLAEDDALDAGEISDILGAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKAVVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P    
Sbjct: 361 DAQNIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K +D ++ G  V VK+L+ D +G+++LS+K  +
Sbjct: 661 KVTDYLQMGQEVAVKVLEVDRQGRVRLSIKEAN 693


>gi|86148613|ref|ZP_01066896.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
           MED222]
 gi|85833604|gb|EAQ51779.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
           MED222]
          Length = 706

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/699 (49%), Positives = 484/699 (69%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL +SG PF GP+  A+V +I+G+ VLNP   E + S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SGT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI+AI++ A   A      ++   +
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L+ ++++  +  L  +  I EK  R +Q+  +K   V    ++  + +E EI  +   
Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY+G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK   +   +
Sbjct: 661 EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAE 699


>gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
 gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
          Length = 701

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/693 (49%), Positives = 473/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +      ++    + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA    K       +   
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +     I  K  R  ++ +L+ + V+ FS E    +  E+  +F +
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSAAEVKDIFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 VIGQSRTELSANAPTMISMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA++ I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|257096716|sp|B0RRB8|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 704

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/698 (50%), Positives = 478/698 (68%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L T V  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      K    +     + L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + +   L  +  + +K  R   I  +KK ++   +       W+  E+   F +++
Sbjct: 243 SALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D
Sbjct: 303 YHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EMSK L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81306090|sp|Q4UW98|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81793552|sp|Q8P7V1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 704

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/698 (50%), Positives = 478/698 (68%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L T V  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      K    +     + L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + +   L  +  + +K  R   I  +KK ++   +       W+  E+   F +++
Sbjct: 243 SALKEAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D
Sbjct: 303 YHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EMSK L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           NT127]
 gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           NT127]
          Length = 709

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/699 (48%), Positives = 476/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI +  K   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFTKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEGISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
           ATCC 19718]
 gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 708

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/691 (48%), Positives = 470/691 (68%), Gaps = 3/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
                  I +    L +ETG IA+Q+ GAV+ +  +TVVL T V D+  K GQDFFPLTV
Sbjct: 1   MKPIKKSITYGRHTLTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+ Y+ G+IPG + +RE RP+E E L SR+IDR IRPLF   + NE QV+  V+  D
Sbjct: 61  DYQEKFYSAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E    + +M+  SAAL+LSG+PF+GPV  A+V YIN +Y+LNP   +  +  L+L V+G
Sbjct: 121 TEIDADIPAMIGTSAALILSGIPFDGPVGAARVGYINNEYILNPTTTQLKESQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           TQ AVLMVE EA++LSEDV+L A+ +GH++ + VI+ I++LA             +    
Sbjct: 181 TQKAVLMVESEADELSEDVMLGAVTYGHDQMQQVIDMINELADEAGVTAWDWQPAEQDLS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
           L E+++Q+ + DLR +  + +K  R + I+++ +++ +          +E  +  +   +
Sbjct: 241 LVEKVTQLAEADLRNAFRLKQKSARVEAINEIWQRVFTELKVGTEEGPSEQAVREIGFAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR  +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+ + TLGT  
Sbjct: 301 EARIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G     FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  V+P   +
Sbjct: 361 DEQKIDALQGDYSERFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVIPPVEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y++R+VSE+TES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FGYSMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEGNRFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGTEHGITALQMDIKIQGITKEIMQVALLQAKEGRLHILEIMKQS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  +R  +    PR+    I P++IR+VIG GG VIR + E+TG  ++I DDG+V IA  
Sbjct: 541 LPIARESISVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIACV 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S    E AR+ I  IT   EV +IY+G V+K++DFGA V     +DGL+HISQ++ ERV 
Sbjct: 601 SSEGGEQARKRIEDITADVEVGRIYEGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             +D +KEG TV VK+L+ D++G+++LSMK 
Sbjct: 661 NVADHLKEGQTVRVKVLEADEKGRLRLSMKA 691


>gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           KT2440]
 gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           KT2440]
          Length = 701

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/693 (49%), Positives = 473/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +      ++    + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA    K       +   
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +     I  K  R  ++ +L+ + V+ FS E    +  E+  +F +
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 VIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA++ I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|90416139|ref|ZP_01224071.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2207]
 gi|90331864|gb|EAS47078.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2207]
          Length = 715

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/695 (49%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETGRIARQ+ GAVL +  +T VL TVV  R  K G DFFPL V+Y
Sbjct: 3   PITKSFQYGNHTVTLETGRIARQATGAVLCSIDDTSVLCTVVGAREAKPGMDFFPLGVHY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+ +RE RP E E L SR+IDR IRPLF   +KNE QV+  VM  +  
Sbjct: 63  IEKAYAAGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPNGFKNEVQVVCTVMSAEKN 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVSGT 181
             P + +M+  SAAL +SG+PF GPV GA+V Y + Q Y+LNP   E   S LD+ V+GT
Sbjct: 123 IDPDIAAMIGTSAALSISGIPFNGPVGGARVGYTDEQGYLLNPTYSELADSALDMVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240
           +DAVLMVE EA++LSED++L  ++F H E + VI  I++LA    K      ++ + + L
Sbjct: 183 KDAVLMVESEASELSEDIMLGGVLFAHQEMQSVITVIAELAAEVGKPRWDWVAEVENADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +  ++ ++  DL  +    +K  R  +I+ L+    +   +E     E +I   F+ ++ 
Sbjct: 243 KTALNDLVGADLDAAYQTVDKQARVVKINALRDIANAQLIAEDGPTAE-DIKDSFKKLEK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  ++  + R+DGRD+ TVR I  +VG+L + HGSSLF RG+TQAIV  TLG+  D 
Sbjct: 302 SIVRGRIIRGEPRIDGRDTTTVRGIDVEVGILPKVHGSSLFTRGETQAIVAATLGSTRDA 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G + + FM+HYNF P + GE  R+G  SRRE+GHGRLARR I+ VLP   +FP
Sbjct: 362 QMIDALEGRRDDPFMLHYNFPPYSVGEAGRIGFTSRREVGHGRLARRGINAVLPSPEEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+   + +L+DI 
Sbjct: 422 YAMRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDSGYAVLTDIL 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA + RLHIL EM+KV+S
Sbjct: 482 GDEDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALEQAMQARLHILGEMNKVIS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ +  PR+ +M I  D+IR+VIG GG  IRG+ E+  + ++IDD G VK+ S   
Sbjct: 542 TGRDEVADTAPRMGVMQIDSDKIRDVIGKGGATIRGLCEEHNSTIDIDDSGAVKVYSEDT 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A + AA + I +I   PE   IY+G+VV++++FGAFV+F    DGLVHISQ++ ERVAK 
Sbjct: 602 AGLNAAMDAIAAIVADPEPGTIYEGKVVRIVEFGAFVNFMPGTDGLVHISQIAQERVAKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +D + EG TV VK+L+ D+RG++KLS+K    + G
Sbjct: 662 TDYLSEGQTVRVKVLEIDNRGRVKLSIKEAQSDEG 696


>gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           RdAW]
 gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           RdAW]
          Length = 709

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/699 (48%), Positives = 477/699 (68%), Gaps = 2/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + V+EAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK +R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SNAAKNVMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            SD ++ G  V VK+++ D +G+I+L+MK +       I
Sbjct: 661 VSDYLQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETEI 699


>gi|254229311|ref|ZP_04922728.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
 gi|262393386|ref|YP_003285240.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
 gi|151938119|gb|EDN56960.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
 gi|262336980|gb|ACY50775.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
          Length = 711

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/691 (48%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ +  I+AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIKAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+++++++ +  L  +  I EK  R  +I+++  ++     +E    +  EI ++F D
Sbjct: 241 TALKDKIAELAEAKLVEAYKITEKMARYDRINEIAAEVNEVLLAEDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis
           HI4320]
 gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
           29906]
 gi|226702677|sp|B4F2C3|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis
           HI4320]
 gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 709

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/693 (49%), Positives = 484/693 (69%), Gaps = 2/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+     T V  TVV  + +K+GQDFFPLT
Sbjct: 1   MLNPTVRKFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE QV+  V+  
Sbjct: 61  VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+ GA+V +I+GQYVLNP +DE +   LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L     KE      +  ++
Sbjct: 181 GTAGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKWDWAPEPINQ 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + ++Q+ +  +  +  I EK  R +QID ++ +++S   +E  S +EGEI+ +F  +
Sbjct: 241 SLHDRIAQLAQTRIGDAYRITEKQERYEQIDAIRDEVISTLLAEDESLDEGEIIEIFSGL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+VR  +L  + R+DGR+ + VR +  + GLL RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKKIVRARVLAGEPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D + G   + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQTIDDIMGEHTDTFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI + VAGIAMGLVK+G++F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+ +G++A+QMD+KI GI+  IM +AL QAK  RLHIL  M   
Sbjct: 481 ILGDEDHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHILGVMESA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S+ R ++ EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 ISQPRAEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  + + A   I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 SGEQAKQAIARIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K SD +  G  V VK+L+ D +G+I+LSMK   
Sbjct: 661 KVSDYLTMGQEVPVKVLEIDRQGRIRLSMKEAQ 693


>gi|328474238|gb|EGF45043.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
           10329]
          Length = 711

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/692 (48%), Positives = 474/692 (68%), Gaps = 3/692 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+ +++++ +  L  +  I EK  R  +I ++  ++     ++    +  EI ++F D
Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            K SD + EG  V VK+L+ D +G+++LSMK 
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKE 692


>gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida]
          Length = 701

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/693 (49%), Positives = 473/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +      ++    + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA    K       +   
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +     I  K  R  ++ +L+ + V+ FS E    +  E+  +F +
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 VIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA++ I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
           Y412MC10]
 gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
           Y412MC10]
          Length = 701

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/690 (47%), Positives = 449/690 (65%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE++  GRPL  ETGR+A+Q++ AV+  YGET VL TV      KD  DFFPLTVNY+
Sbjct: 3   TRVEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV+  VM  D + 
Sbjct: 62  ERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
            P + +M+  SAAL +S +PF GP+ G  V  ++G +V+NP + +++   + L V+GT+D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTKD 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A++MVE EAN++ E+V+L+AI+FGH E K ++  I +L   C KE + +     ++ +  
Sbjct: 182 AIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNR 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           E+ +  +  L  +  I EK+ R   ID +  +  + F  ++    E   ++  V  DI  
Sbjct: 242 EVREFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++   KVR DGR    +R I     LL RTHGS LF RG TQA+ V TLG   D 
Sbjct: 302 EEVRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P    FP
Sbjct: 362 QILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   IL+DI 
Sbjct: 422 YTIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  ALQQAK GR+HIL +M++ + 
Sbjct: 482 GMEDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQ 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R  L ++ P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+ 
Sbjct: 542 KPRETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSND 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A  +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK 
Sbjct: 602 EMNKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVV  GD + VK+ + D +G+I LS K V
Sbjct: 662 EDVVAIGDVITVKVTEIDQQGRINLSRKAV 691


>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
           denitrificans ATCC 25259]
          Length = 706

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/694 (49%), Positives = 482/694 (69%), Gaps = 4/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
                 +    + LETG IARQ+ GAV+    +T+VL TVV    +K GQDFFPLTV+YQ
Sbjct: 4   IKKTFTYGRHQVTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+TYA G+IPGG+L+RESRP+E E LISR+IDR IRPLF + + NE Q+I  VM  + E 
Sbjct: 64  EKTYAAGRIPGGFLKRESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           S  + +++ ASAAL LSGLPF+GPV  A+V +ING+YVLNP   E + S LDL V+GT+ 
Sbjct: 124 SADIPALIGASAALSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALDLVVAGTES 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEE 242
           AVLMVE EA +L ED++L A++FGH + +  I AI++LA     +        + + + +
Sbjct: 184 AVLMVESEAMELPEDIMLGAVVFGHTQMQAAINAINELADEAGADAWDWAPPAEDTAMVD 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDIQAK 301
            +  + ++ L+ +  I +K  R   +D+++ K  +   +++  +     +   F  ++A 
Sbjct: 244 RLKALAEDGLQQAYNIKQKRARMAAVDEVRSKAFAELITADMDTVAANHVKDAFHRLEAG 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L  + R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+VV TLGT  DEQ
Sbjct: 304 VVRNRILSGQPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G+  + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP   +F Y
Sbjct: 364 TIDALEGSYSDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG  L+LMDAG P+   VAGIAMGL+K+G+ F +L+DI G
Sbjct: 424 TMRVVSEITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVLTDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM  AL QAK GR+HIL  M   +SE
Sbjct: 484 DEDHLGDMDFKVAGTENGVTALQMDIKITGITKEIMQAALTQAKEGRMHILGIMKASVSE 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           +  ++  + PR+  M I P++IR+VIG GG VIR + E+TG +++I +DG+VKIA +S+ 
Sbjct: 544 TH-EMSAYAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQIDIQEDGSVKIACTSME 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++ I  IT   EV K+Y+G V+K++DFGA V+    RDGL+HISQ++ ERV    
Sbjct: 603 AGELAKKRIEEITAEVEVGKVYEGPVIKLLDFGAIVNVLPGRDGLLHISQIAHERVNTIG 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D +KEG  V VK+L+ D++G+++LSMK + +   
Sbjct: 663 DYLKEGQVVRVKILEADEKGRLRLSMKALLEAPA 696


>gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
 gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
          Length = 715

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/689 (49%), Positives = 472/689 (68%), Gaps = 2/689 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+ +  +T V  TVV  +    G+DFFPLTV
Sbjct: 1   MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA G+IPGG+ RRE RP+E E LISR+IDR IRPLF + + NE QV+  VM  +
Sbjct: 61  NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
              SP +V+M+ ASAAL +SG+PF GP+  A+V Y+NGQYVLNP   E  Q  LDL V+G
Sbjct: 121 PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T +AVLMVE EA  LSE+V+L A+++GH + + VI AI++ A     +P        ++ 
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVYGHEQMQTVINAINEFAAAVGTKPWDWTPPAVNEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++   +L  +  I EK VR + I  +K ++V    +     +  +I   F  ++
Sbjct: 241 LKAKVAELASAELGEAYRITEKAVRYETIAAIKGRVVEQVIASGVEEDAKKIGEEFHSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGRD E +R +S   G+L R HGS+LF RG+TQAIVV TLGT  D
Sbjct: 301 SRIVRGRVVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + FM+HYNF P   GE   MG+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA+  RLHIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R Q+ +F PR+  + I P++I++VIG GG VIR + E+TG  + +DDDGTV+I++ +
Sbjct: 541 QAPRAQISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVA 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I +IT   EVN+IY+G+VV++ DFGAFV+    +DGLVHISQ++  RV  
Sbjct: 601 NEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            +D +  GD V VK+L+ D +G+++LS+K
Sbjct: 661 VADHLTIGDVVKVKVLEVDRQGRVRLSIK 689


>gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1]
 gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1]
 gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           BIRD-1]
          Length = 701

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/693 (49%), Positives = 473/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +      ++    + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA    K       +   
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +     I  K  R  ++ +L+ + V+ FS E    +  E+  +F +
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSASEVKDIFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 VIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA++ I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|153835027|ref|ZP_01987694.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
 gi|148868504|gb|EDL67603.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
          Length = 710

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/700 (48%), Positives = 477/700 (68%), Gaps = 3/700 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P + +M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELDTSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++     A       +  + 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K SD + EG  V VK+L+ D +G+++LSMK   +   + 
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEE 700


>gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
           5369-93]
 gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
           5369-93]
          Length = 708

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/697 (48%), Positives = 479/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI+AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I  +  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALLAENEALDTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K SD + E   V VK+L+ D +G+++LSMK   + +
Sbjct: 661 EKVSDYLTESQEVQVKVLEIDRQGRVRLSMKEAVETS 697


>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Thermoanaerobacter tengcongensis MB4]
          Length = 707

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/697 (43%), Positives = 463/697 (66%), Gaps = 3/697 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y++GKIPGG+++RE +P+E  IL +R+IDR IRPLF + Y+N+ QVI  V+  D
Sbjct: 61  EYEERLYSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            ++ P +V+M+ +S AL +S +PF GP     V  ++G++V+NP  ++ + SL  L VSG
Sbjct: 121 PDAQPEIVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DA++MVE  A ++ E+ +LDAI++ H   K ++E I  + K        +   +   +
Sbjct: 181 TKDAIVMVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEIDKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     E +  +   PEK  R   +D ++++++ +F  E+   N  +I  V   I 
Sbjct: 241 LEEKVRAYATEKIYNALRTPEKKERNDNLDKVEQEVLEHFKDEYPD-NLADIDEVLYKIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D
Sbjct: 300 KEQMRKMIKEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q ++ +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 IQILEGIGDEEFKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGIAMGL+K+ D+ +IL+DI
Sbjct: 420 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLILTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ G+TA+QMD+KI GI  +I+ MAL++A++ RL++L +M +V+
Sbjct: 480 QGIEDFLGDMDFKVAGTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L ++ PRV  M + P++IR++IG  GK I  I+ +TG K++I++DG + I + +
Sbjct: 540 KEPRKELSKYAPRVVRMVVNPEKIRDIIGPAGKTITKIISETGVKIDIEEDGRLYITAPN 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L   E A++MI +IT   EV  IY G+V+++  FGAFV     ++GLVHIS LS +RV +
Sbjct: 600 LEAGERAKQMIEAITKDIEVGGIYLGKVLRIAPFGAFVEIAPGKEGLVHISNLSKKRVRR 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVVK GD + VK+ + D  G+I LS K    +  +
Sbjct: 660 VEDVVKVGDNILVKVTEIDKLGRIVLSRKDAMPDEEE 696


>gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
           2581]
 gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
           2581]
          Length = 710

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/693 (49%), Positives = 470/693 (67%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETGRIARQ+ GAV+ T  +TVVL TVV  + +   Q FFPL+V
Sbjct: 1   MNPVKKTFEYGRSTVTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+TYAVGKIPGG+ +RE RPTE E L SR+IDR IRPLF K + NE QVI  V+  D
Sbjct: 61  HYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQGS-LDLFVS 179
               P + +M+  SAAL +SG+PF GP+  A+V +     Y LNP ++E   S L++ V+
Sbjct: 121 RNHDPDIAAMIGTSAALAISGVPFNGPIGAARVGFTEEHGYFLNPSVEELASSELNMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EAN+L ED +L A+++GH E +  I AI +LA    K      +  + +
Sbjct: 181 GTEKAVLMVESEANELLEDEMLGAVLYGHQEMQVAINAIQELAAEAGKPRWDWQAPAENT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFED 297
            L++ M+   +  +  +  I +K  R   +  LK + V   +  E   ++  E+   F  
Sbjct: 241 ALKDAMASGFEAKVGEAYRITDKMQRQDALAALKDEAVEQLAGEEDGKFDADEVKGAFAS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR+ ++  + R+DGRD +TVR +  +VG L +THGS++F RG+TQA+VV TLGT 
Sbjct: 301 LEKRVVRSRVVKGEPRIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTL 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q ++SL G +++ F++HYNF P   GE   MG P RREIGHGRLARR +  +LP   
Sbjct: 361 RDAQLIESLEGERKDRFLLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGVEAMLPSED 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVKD D F +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDEDGFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+E IM  ALQQA   RLHIL +M+ 
Sbjct: 481 DILGDEDHLGDMDFKVAGSAEGVTALQMDIKIEGINEEIMEQALQQAHEARLHILEQMNT 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ +SR ++ E  P +  + I P++IR+VIG GG +IR I E TGA +++DDDGTV+I +
Sbjct: 541 VIGQSREEVSENAPSMATIKIDPEKIRDVIGKGGAMIRKICEDTGASIDLDDDGTVRIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              +  +AA + + +IT VPE+ K+Y+G+VV++ DFGAFV+     DGLVHISQ+  ERV
Sbjct: 601 EEKSAAKAAIDTVLAITAVPEIGKLYRGKVVRIADFGAFVNIIPGTDGLVHISQIVPERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               D + EGD   VK+LD D+R ++KL++K +
Sbjct: 661 NDVRDYLNEGDEPIVKVLDIDNRNRVKLTIKEI 693


>gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas gardneri ATCC 19865]
 gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas gardneri ATCC 19865]
          Length = 704

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/698 (50%), Positives = 480/698 (68%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTISELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      K    +     + L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHRELQKVINVINELTVEAGTKPSTWVAPAKNTALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + +   L  +  + +K  R   I  +KK ++   +       W+  E+   F +++
Sbjct: 243 NALKEAVGAQLSGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +L+ KVR+DGR  +TVR IS Q G+L RTHGS+LF RG+TQAIVV TLGT  D
Sbjct: 303 YHTMRDSVLETKVRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+ D F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRL+IL EMSK L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  RL+L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRLELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1]
 gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens
           CN-32]
 gi|187611297|sp|A4Y9B5|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611299|sp|A1RGY0|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1]
 gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
           CN-32]
 gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
           200]
          Length = 699

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/692 (48%), Positives = 474/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + + + S L+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLMVE EA  L E+V+L ++++GH++ + VI AI++      K      +    + 
Sbjct: 181 TASAVLMVESEAQALPEEVMLGSVVYGHDQQQVVINAIAEFKAEAGKPMWDWTAPVQDET 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  L  +  I  K  R  Q+  +K        + + + +  E+ ++   ++
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVAVVKAATKEALLASNPNIDLREVDNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  ++  + R+DGR+ + +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTV+IASS+
Sbjct: 541 GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVRIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQ 692


>gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           A1501]
 gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
           A1501]
          Length = 701

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/693 (49%), Positives = 486/693 (70%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  ++    + FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF + ++NE QVI  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GP+  A+V +     Y+LNP  ++ +  SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-F 237
           +GT+DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA    K      +    
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L + +       +  +  I  K  R  ++D+L++++V+ FS E    + GE+   F +
Sbjct: 241 TALLDAIRSEFGAAISEAYTITIKQQRYARLDELREQVVAKFSGEEGQPSGGEVKDAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMGA  RREIGHGRLARR +  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +MS+
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMSQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+++SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 VIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAA++ + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R+
Sbjct: 601 ETKEAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +DV+KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDV 693


>gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 710

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/699 (48%), Positives = 479/699 (68%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++     A      +  ++ 
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK   + T +
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKTEE 699


>gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica
           RCB]
 gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas
           aromatica RCB]
          Length = 715

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/698 (50%), Positives = 480/698 (68%), Gaps = 3/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+V      +    + +ETG +ARQ+ GAVL +  ETVVL TVV  ++ K GQDFFPLT
Sbjct: 1   MFNVVKKTFAYGDHQVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGG+ +RE RP+E E L  R+IDR IRPLF   + NE QVI  VM  
Sbjct: 61  VDYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++ ASAAL +SG+PF GP+  A+V YI+GQYVL P L + +GS LDL V+
Sbjct: 121 NPEIDSDIPALIGASAALAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA+QLSE+V+L A++FGH E +  I AI++L +   K     ++     
Sbjct: 181 GTEAAVLMVESEADQLSEEVMLGAVVFGHTEMQKAINAINELVEEAGKPEWEWEAAPKDE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
            L   +S ++   L  +  I  K  R + +  ++ + V+   +    + +E  + ++F +
Sbjct: 241 ALVASLSALVSAKLEEAYNITVKQTRSQAVKAIRAEAVAALCTGAEGAPDENTVGNLFHE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+A +VR  +L    R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 IEASIVRGRILSGAPRIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTN 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALAGEYRDRFMLHYNMPPYATGECGRVGTPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F Y++R+VSEITES+GSSSMA+VCG  LAL+DAGVP+   VAGIAMGL+KDG+ F +L+
Sbjct: 421 DFSYSMRLVSEITESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI++ IM +AL QAK  R+HILN M +
Sbjct: 481 DILGDEDHLGDMDFKVAGSTTGITALQMDIKIQGITKEIMQVALAQAKEARIHILNLMQE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +  R ++  + PR+    I P++IR+VIG GG VIR + E+TG  ++I DDGT+ IA+
Sbjct: 541 SAAGPREEMSAYAPRLYTFKINPEKIRDVIGKGGAVIRALTEETGTTIDIQDDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S     AAR  I +IT   E+ KIY+G V+K++DFGA V     +DGL+HISQ++ ERV
Sbjct: 601 TSGEAAAAARSRIDAITAEVEIGKIYEGTVLKILDFGAIVSVLPGKDGLLHISQIAQERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            K  D VKEG  V VK+L+ DDRG++KLSMK    + G
Sbjct: 661 NKVEDYVKEGQIVRVKVLETDDRGRVKLSMKAAAADEG 698


>gi|322382340|ref|ZP_08056247.1| polynucleotide phosphorylase-like protein/polyadenylase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153693|gb|EFX46068.1| polynucleotide phosphorylase-like protein/polyadenylase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 699

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/693 (46%), Positives = 450/693 (64%), Gaps = 5/693 (0%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++ AGRPL LETGR+A+Q++ +VL  YG+TVVL TV      KD  DFFPLTVNY+ER Y
Sbjct: 1   MDLAGRPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKD-LDFFPLTVNYEERLY 59

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+++RE RP+E  IL SR+IDR IRPLF + ++NE QV+  VM  D E SP +
Sbjct: 60  AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 119

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLM 187
            +M   SAAL +S +PF GP+ G  V  I+G++V+NP  ++  +  + L V+GT+DA++M
Sbjct: 120 AAMTGVSAALSISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDIHLTVAGTKDAIMM 179

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMSQ 246
           VE  A ++ E+V+L+AI+FGH + K ++    +  +      + +       ++  ++ +
Sbjct: 180 VEAGAAEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEEAGVPKMEVQLHQVDEEINAKVRE 239

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVR 304
                +  +  +PEK+ R + ID +  +   +F+S  E       ++  V  DI  + VR
Sbjct: 240 FASAKMIEAIQVPEKHARQEAIDLVSAETEEHFASLLEDDPAKLKDVKEVLHDIVKEEVR 299

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +KVR DGR  + +R I   + LL RTHGS LF RG TQA+ V TLG   D Q +D
Sbjct: 300 RLITHEKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILD 359

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   FM HYNF P + GE   + AP RREIGHG L  RAI  V+P   +FPYT+R
Sbjct: 360 GLDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGARAIEQVIPSEEEFPYTIR 419

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GS+S A++C S LALMDAGVPI  PVAGIAMGL+KDG  F IL+DI G ED
Sbjct: 420 LVSEVIESNGSTSQASICASMLALMDAGVPIKAPVAGIAMGLIKDGQHFSILTDIQGMED 479

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  G+TA+QMD+KI GI  +I+  AL QAK GR+ IL +M   +S+ + 
Sbjct: 480 HLGDMDFKVAGTAKGVTALQMDIKINGIDRDILHQALTQAKEGRMFILEKMLSRISDPKK 539

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + P++  M+I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+    +
Sbjct: 540 ELSPYAPKILTMSIHPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSNEQMNQ 599

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E+I  I     V + Y G V ++  FGAFV     ++GLVHISQLS ERVAK  DVV
Sbjct: 600 KAKEIIEGIVREVVVGETYLGTVKRIEKFGAFVEVLPNKEGLVHISQLSIERVAKVEDVV 659

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             GD + VK+ + D++G+I LS K    N  KP
Sbjct: 660 SIGDKITVKVTEIDNQGRINLSRKATLVNQEKP 692


>gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
 gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
          Length = 708

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/688 (45%), Positives = 443/688 (64%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            E+E AGR L++ETG++A Q++GAVL  YG+T V   V   +  ++G DFFPL+V+++E+
Sbjct: 5   FEMELAGRKLRIETGKLAEQANGAVLVRYGDTTVFVAVTASKEPREGIDFFPLSVDFEEK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGGY++RE +PTE  IL SR+IDR IRPLF K Y+N+ QV+   +  + +  P
Sbjct: 65  LYAVGKIPGGYIKREGKPTEKAILTSRLIDRPIRPLFPKGYRNDVQVVAMPLSVEPDVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            VV+MV ASAAL +S +PFEGP+    V  ++G+ V+NP   + +   L L V+GT+DA+
Sbjct: 125 DVVAMVGASAALSISDIPFEGPIGAVLVGLVDGELVINPDAAQRERSRLHLTVAGTKDAI 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEM 244
           +MVE  AN++ ED +L+AI+FGH   K ++    ++         V +      ++E  +
Sbjct: 185 MMVEAGANEVPEDKILEAIMFGHEHIKQLVAFQEQIVSEVGIPKNVPELHHVDPEIETAV 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            +   + +  +     K  R  Q+D +K+ +  +F+       E EI     +I  + VR
Sbjct: 245 REYAFDMISEAVRSNNKQGREDQMDKVKEDIFEHFAEAFPE-REAEIDEAVYNITKECVR 303

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L +  R DGR  + +R IS +VGL+ R HGS LF RG TQ + + TLG   DEQ ++
Sbjct: 304 KMVLTEGARPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQMLE 363

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS  +   ++ HYN  P +TGE   M  P RREIGHG LA RA+ P++P   +FPYT+R
Sbjct: 364 DLSLEESKRYIHHYNMPPYSTGEAKMMRGPGRREIGHGALAERALEPMIPSQEEFPYTIR 423

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISGD 482
           +VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+KD   D   IL+DI G 
Sbjct: 424 LVSEVMSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLMKDEQSDKVAILTDIQGL 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED  G MDFKVAGT  G+TA+QMD+K+ GI  +I+  AL+QA  GR+ I+N+M +V+SE 
Sbjct: 484 EDFFGDMDFKVAGTADGVTAIQMDIKVKGIDRSILEAALKQAYEGRMFIMNKMLEVISEP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++  + P++  M I PD+IR+VIG GGKVI  I+  TG K++I++DGT+ IA+     
Sbjct: 544 RKEVSPYAPKIMTMTIDPDKIRSVIGSGGKVINKIIADTGTKIDIEEDGTIYIAAPDSES 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I  I    E   +Y G+V ++M FGAFV     ++GLVHIS+LS E VAK  D
Sbjct: 604 GKKAMRIIEGIVKDVEAGDVYLGKVTRIMPFGAFVEILPGKEGLVHISKLSKEHVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VVK GD + VK+ D D +G+I LS K V
Sbjct: 664 VVKVGDEILVKVTDIDKQGRINLSHKAV 691


>gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 702

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/688 (47%), Positives = 456/688 (66%), Gaps = 5/688 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++  GRPL LETGR+A+Q++ AV+  YG+T VL TV      KD  DFFPLTVNY+E+
Sbjct: 5   VRMDLGGRPLILETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKD-LDFFPLTVNYEEK 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ Q++  VM  D +  P
Sbjct: 64  LYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIVNLVMSVDQDCEP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            + SM+  SAAL +S +PF GP+ G  V  +NG++V+NP + + +   + + V+GT+DA+
Sbjct: 124 EIASMIGTSAALSISDVPFNGPIGGVAVGRVNGEFVINPDVAQQEASDIYVVVAGTKDAI 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           +MVE EAN++ E+V+L+AI+FGH E K ++  I  L K+  KE + +       ++  E+
Sbjct: 184 MMVEAEANEVPEEVMLEAIMFGHEEIKKIVAVIEDLVKVAGKEKMQVQLHTVNEEVNREV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQAKV 302
               ++ L  +  I EK+ R   ID +  + V++F  ++    E   ++  V  DI  + 
Sbjct: 244 RAYAQDRLIEAVKIAEKHARQDAIDAINDETVAHFEEKYIETPELLADVKEVLHDIVKEE 303

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++  +KVR DGR  + +R I   + LL RTHGS LF RG TQA+ + TLG   D Q 
Sbjct: 304 VRRLITHEKVRPDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQI 363

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P  ++FPYT
Sbjct: 364 LDGIDLEESKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPPESEFPYT 423

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDG+   IL+DI G 
Sbjct: 424 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDIQGM 483

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QA+ GRL IL++M + + + 
Sbjct: 484 EDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRQILSDALKQAREGRLFILSKMMERIQKP 543

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  L  + P++ IM I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++   
Sbjct: 544 KEHLSPYAPKITIMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVYIASTNEEM 603

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
              AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK  D
Sbjct: 604 NNKARSIIEGIVKEVVVGEIYVGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVED 663

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           VV  GDTV VK+ + D++G+I LS K V
Sbjct: 664 VVAIGDTVTVKVTEIDNQGRINLSRKAV 691


>gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 702

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/694 (48%), Positives = 478/694 (68%), Gaps = 5/694 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T   +  VL TVV  ++    + FFPL+
Sbjct: 1   MNPVIKQFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-GSLDLFV 178
             ++ P + SM+  SAAL +SG+PF GP+  A+V +  +  Y+LNP  ++ +  SLD+ V
Sbjct: 121 SKKTDPDIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-F 237
           +GT+ AVLMVE EA++L+ED +L A++F H E + VI+A+ + A    K      +    
Sbjct: 181 AGTETAVLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFE 296
           + L + +     E +  +  I  K  R  ++D+L++++++  + E    +   E+ + F 
Sbjct: 241 TPLLDAIRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFG 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I+ + VR  ++D K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT
Sbjct: 301 EIEYRTVRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  +LP+ 
Sbjct: 361 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKD 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLV +G+ F +L
Sbjct: 421 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL+QA   RL+IL +M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +V+S+SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI 
Sbjct: 541 QVISQSRTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             +    EAA++ + +IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS +R
Sbjct: 601 GETKDAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K +DV+KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 VEKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDV 694


>gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf-5]
 gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           Pf-5]
          Length = 703

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/695 (48%), Positives = 479/695 (68%), Gaps = 6/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SK 235
           +GT++AVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA   AK     D   + 
Sbjct: 181 AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQSVIKAVKELAAEAAKPTWDWDWAAAP 240

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           + ++L   +     E +  +  I  K  R  ++ +LK ++V+  S E    +  ++ + F
Sbjct: 241 EATELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAF 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLG
Sbjct: 301 GEIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP 
Sbjct: 361 TARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPA 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 421 ADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M
Sbjct: 481 LTDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI
Sbjct: 541 NQIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
              +    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  
Sbjct: 601 FGETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDA 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 RVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 695


>gi|59711097|ref|YP_203873.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri ES114]
 gi|75354543|sp|Q5E7L1|PNP_VIBF1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|59479198|gb|AAW84985.1| polynucleotide phosphorylase (PNPase) [Vibrio fischeri ES114]
          Length = 709

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/696 (48%), Positives = 479/696 (68%), Gaps = 3/696 (0%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +      ++    + LETG IARQ+  AV+A+  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFANPVVKSFQYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + E +P +++M+  SAAL ++G+PF GP+  A+V +ING+ VLNP   E + S LDL V
Sbjct: 121 INPEVNPDMITMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           SGT+ AVLMVE EA+ L+E+ +L A++FGH + + VI AI++ A   A      +  ++ 
Sbjct: 181 SGTEGAVLMVESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   ++++ +  L  +  I EK  R  +I ++  ++     SE+   N  E+ ++F D
Sbjct: 241 TVLNARIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL  M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R ++ EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREEISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV KIY G+V++++DFGAFV   G ++GLVHISQ++ ER+
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K +D ++ G  V  K+L+ D +G+I+LS+K  +  
Sbjct: 661 EKVADHLQVGQEVKTKVLEIDRQGRIRLSIKEANAE 696


>gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
 gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
          Length = 701

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/690 (47%), Positives = 449/690 (65%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE++  GRPL  ETGR+A+Q++ AV+  YGET VL TV      KD  DFFPLTVNY+
Sbjct: 3   TRVEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV+  VM  D + 
Sbjct: 62  ERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD 183
            P + +M+  SAAL +S +PF GP+ G  V  ++G +V+NP + +++   + L V+GT+D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTRD 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A++MVE EAN++ E+V+L+AI+FGH E K ++  I +L   C KE + +     ++ +  
Sbjct: 182 AIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNR 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           E+ +  +  L  +  I EK+ R   ID +  +  + F  ++    E   ++  V  DI  
Sbjct: 242 EVREFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEKYIETPELLKDVKEVLHDIVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++   KVR DGR    +R I     LL RTHGS LF RG TQA+ V TLG   D 
Sbjct: 302 EEVRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P    FP
Sbjct: 362 QILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   IL+DI 
Sbjct: 422 YTIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  ALQQAK GR+HIL +M++ + 
Sbjct: 482 GMEDHLGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQ 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R  L ++ P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+ 
Sbjct: 542 KPRETLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSND 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A  +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK 
Sbjct: 602 EMNKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVV  GD + VK+ + D +G+I LS K V
Sbjct: 662 EDVVAIGDVITVKVTEIDQQGRINLSRKAV 691


>gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
 gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
          Length = 701

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/693 (48%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI A+ +LA   AK       + + 
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +  +  I  K  R  ++ +L+ ++V+  S E    +  ++ + F +
Sbjct: 241 TELLAAIRSEFGEAISQAYTITIKADRYARLGELRDQVVAKLSGEEGQPSAADVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718278|gb|EAS84928.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 690

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/693 (54%), Positives = 509/693 (73%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V+  EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV  + +    D+FPL+
Sbjct: 1   MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   +KNE Q++  V+ +
Sbjct: 61  VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D ++ P ++++ A+SAAL +SG+PF GPV  ++V  ++G+Y+LNP   E + S LDL V+
Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE E + L+E+V+LDA+ FGH    PVIE I +LAK C K    ++ KD S+
Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ +   EDL  +    +K  R  QI ++  K    F +E  ++++  +    ++++
Sbjct: 241 VKKKLEENFTEDLTKAFATIDKQERSNQISEISDKAKQLF-AEDENYSDFNVNDELKNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L  K R+DGR    VR I  +VG+L RTHGS+LF RG+TQAIVV TLGT +D
Sbjct: 300 KKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ ++SL G  R  FM+HYNF P + GE  R+G   RRE+GHG+LA RAI+  LP   +F
Sbjct: 360 EQRLESLDGQHRERFMLHYNFPPFSVGETGRIG-TGRREVGHGKLAWRAINSSLPPKEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+  IM  AL+QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR  +GE TP++E + +    I  VIG GG  IR IVE++GAK++++D+G V +A+  
Sbjct: 539 SESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +MI+ IT   E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+T+RV K
Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +D+VKEGD V VK++ FD RGK+KLSMK   +
Sbjct: 659 VTDIVKEGDEVKVKVIGFD-RGKVKLSMKQAAE 690


>gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
          Length = 709

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/689 (50%), Positives = 478/689 (69%), Gaps = 3/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +   + +    L LETG IARQS GA++ +  +TVVL TVV  +  K  QDFFPLTV+YQ
Sbjct: 9   YKKTLSYGKHQLTLETGEIARQSSGAIMVSLDDTVVLVTVVGRKDAKPDQDFFPLTVDYQ 68

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ERTYA GKIPGG+ +RE RP+E EIL SR+IDR +RPLF + + NE Q++  VM  D + 
Sbjct: 69  ERTYAAGKIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPESFYNEVQIVATVMSSDPQI 128

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
              + +M+ ASAAL +SG+PF+GP+  A+V Y+NGQYVLNP  DE  +  +DL V+GT  
Sbjct: 129 DSDIPAMIGASAALAISGIPFDGPIGAARVGYLNGQYVLNPTKDELVESKMDLVVAGTAK 188

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEE 242
           AVLMVE EA +LSEDV+L A++FGH + + VI AI+++A    ++      +     L  
Sbjct: 189 AVLMVESEAQELSEDVMLGAVVFGHEQMQAVINAINEMADSVGQDDWDWTPAPKNEALIA 248

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAK 301
            ++ + + +L+ +  + +K  R +Q+D ++ K+    +  E  + +  EI  +F  ++AK
Sbjct: 249 RINALAENELKAAYAVRQKQARTQQVDAIRAKVSEALATPEFENVSRNEIGELFSALEAK 308

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +L  + R+DGRD+ TVR I+ + G+L RTHGS LF RG+TQA+VV TLG+  D Q
Sbjct: 309 IVRGQILSGEPRIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDSQ 368

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G   + FM+HYNF P +TGE  R+G P RREIGHGRLA+RA+  VLP   +  Y
Sbjct: 369 TIDALQGEYSDRFMLHYNFPPYSTGETGRVGTPKRREIGHGRLAKRALVAVLPSEEECGY 428

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+KDG  F +L+DI G
Sbjct: 429 AIRVVSEITESNGSSSMASVCGGCLSLMDAGVPVKTHVAGIAMGLIKDGGRFAVLTDILG 488

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+D GITA+QMD+KI GI++ IM +AL QAK GRLHIL  M + +  
Sbjct: 489 DEDHLGDMDFKVAGSDKGITALQMDIKINGITKEIMQVALSQAKEGRLHILGIMKQAMPS 548

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ +F PR+  M I P++IR+VIG GG VIR + E+TG  ++IDD+G + IA  S  
Sbjct: 549 VRPEVSDFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDEGNITIACVSGD 608

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++ I  I    EV KIY+G VVK++DFGA V+    +DGL+HISQ+S ER+A  S
Sbjct: 609 AGELAKKRIEDIVAEVEVGKIYEGPVVKLLDFGALVNILPGKDGLLHISQISHERIANVS 668

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           D +KEG  V VK+L+ DD+G+++LSMK +
Sbjct: 669 DHLKEGQVVKVKVLEVDDKGRMRLSMKAL 697


>gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 701

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/693 (49%), Positives = 477/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|91228271|ref|ZP_01262207.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           12G01]
 gi|269966864|ref|ZP_06180937.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           40B]
 gi|91188148|gb|EAS74450.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           12G01]
 gi|269828531|gb|EEZ82792.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           40B]
          Length = 711

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/691 (48%), Positives = 476/691 (68%), Gaps = 3/691 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ +  I+AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIQAINEFKAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+ +++ + +  L  +  I EK  R  +I ++  ++     +E    +  EI ++F D
Sbjct: 241 TALKNKIADLAEAKLVEAYQITEKMARYDRIHEIAAEVNEVLLAEDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira
           multiformis ATCC 25196]
 gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196]
          Length = 701

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/690 (49%), Positives = 472/690 (68%), Gaps = 3/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                + +    L  ETG IARQ+  A++ + G+TVVL TVV  +S K GQDFFPLTV+Y
Sbjct: 2   KIKKSVTYGSHQLTFETGEIARQAHAAIMVSMGDTVVLVTVVGAKSAKQGQDFFPLTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER+YA G+IPG + +RE RP+E EIL SR+IDR IRPLF + + NE QV+  V+  D E
Sbjct: 62  QERSYAAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQ 182
               + +M+ ASAAL+LSG+PF GP+  A++ YING+YVLNP      Q  L+L V+GT+
Sbjct: 122 VDADIPAMLGASAALVLSGIPFNGPIGAARIGYINGEYVLNPDTSALKQTQLNLVVAGTR 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
            AVLMVE +A +LSEDV+L AI++GH + +  I+AI++LA          +       L 
Sbjct: 182 QAVLMVESDAMELSEDVMLGAIVYGHQQMQVAIDAINELADEAGVTAWDWEPPARDPALA 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQA 300
            +++++ + DLR +    +K VR + ID++  ++ +     +    +   +      +++
Sbjct: 242 VKIAELAENDLRAAFRQKQKQVRSETIDNIWTRVFTELGVEDGEGPDAQAVKEACFALES 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR+ +LD + R+DGRD+ TVR I+ + GLL RTHGS+LF RG+TQA+VV TLGT  DE
Sbjct: 302 RIVRSQILDGEPRIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDE 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D+L G     FM+HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP   +F 
Sbjct: 362 QKIDALQGDYSERFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAVLPSPEEFG 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y+LR+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+K+G+ F +L+DI 
Sbjct: 422 YSLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKGHVAGIAMGLIKEGNRFAVLTDIL 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ I+  AL QA+ GR+HIL  M +VL 
Sbjct: 482 GDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEILHAALVQAREGRMHILAIMRQVLP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + E  PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDGTV IA  + 
Sbjct: 542 ARREDISEHAPRIIKIRINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGTVMIACVNA 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              E A++ I  IT   EV ++Y G V+K++DFGA V     +DGL+HISQ++ ERV   
Sbjct: 602 EGGELAKKRIEDITAEVEVGRVYDGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D +KEG  V VK+L+ DD+G+++LSMK V
Sbjct: 662 GDHLKEGQVVRVKVLEADDKGRLRLSMKAV 691


>gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
 gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
          Length = 747

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/697 (47%), Positives = 479/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V YING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIAAMIATSAALAVSGIPFSGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QL E+V+L A++FGH + K  I+AI  L +   K      +     
Sbjct: 183 GTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++++ +  LR +     K VR          + +  + +  +++  ++  +  DI
Sbjct: 243 ALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A +VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT  
Sbjct: 303 EAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   +
Sbjct: 363 DAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ EAA+  I  IT   E+ KIY+G +VK+++FGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 DGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           K +D ++EG  V VK+L+ DD+G++KLSMK + +   
Sbjct: 663 KVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPA 699


>gi|28198126|ref|NP_778440.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           Temecula1]
 gi|28056186|gb|AAO28089.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1]
          Length = 719

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/694 (51%), Positives = 480/694 (69%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 22  KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 81

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 82  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 141

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT 
Sbjct: 142 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 201

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+IFGH E + VI+ I  L A+ C +    +       L 
Sbjct: 202 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDALV 261

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
             + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++
Sbjct: 262 IALKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELE 321

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D
Sbjct: 322 YRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARD 381

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +F
Sbjct: 382 GQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEF 441

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 442 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 501

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L
Sbjct: 502 LGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKAL 561

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR+VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 562 AAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVN 621

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +
Sbjct: 622 NAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVER 681

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 682 VGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 715


>gi|163802308|ref|ZP_02196202.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
 gi|159173837|gb|EDP58651.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
          Length = 710

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/699 (48%), Positives = 477/699 (68%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQASAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  VM 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E   S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGSARVGHIDGQLVLNPSNTELDASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI+AI++     A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVIKAINEFKSEVATPAWDWVAPQEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    +  EI ++F D
Sbjct: 241 TALVNKIAELAEAKLDQAYQITEKMARYDRIHEIAGEVNDVLLAEDPEADTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQAIV  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G ++++F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTQTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAEKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK       +
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAADTPAE 699


>gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
          Length = 690

 Score =  802 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/674 (49%), Positives = 467/674 (69%), Gaps = 2/674 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH + + VI+ I++L K   K       +  ++ L   ++ + +  L  +  I +
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +L  + R+DGR+ +
Sbjct: 242 KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F+ HYNF
Sbjct: 302 MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 661

Query: 681 GKIKLSMKVVDQNT 694
           G+I+LS+K   + +
Sbjct: 662 GRIRLSIKEATEQS 675


>gi|71898659|ref|ZP_00680829.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71731606|gb|EAO33667.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 700

 Score =  802 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/694 (50%), Positives = 477/694 (68%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 63  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   +       L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKNDALV 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
             +  +I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++
Sbjct: 243 IALKGVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD +VR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D
Sbjct: 303 YRTMRDALLDTEVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +F
Sbjct: 363 GQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L
Sbjct: 483 LGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR+VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 AAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +
Sbjct: 603 NAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVER 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 663 VGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
 gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
          Length = 697

 Score =  802 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/697 (49%), Positives = 470/697 (67%), Gaps = 4/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T +I++    + LETG+IARQ+  AV+   G+T VL TVV  +     ++FFPLT
Sbjct: 1   MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADPSKNFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA G+IPGG+L+RE RP+E E L  R+IDR IRPLF   + NE QV+  VM  
Sbjct: 61  VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P + +++  SAAL +SG+PF GP+  A+V Y +G Y+LNP   E  + +LDL V+
Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFNGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +LSED +L A++FGH E +P+I+ I + A     E       + ++
Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTETWDWKPAEQNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFED 297
            L+  +       L  +  I EK  R  ++ +L++  V+ F++ E  +   GE+  +F  
Sbjct: 241 TLKAAIKDKFGAALGEAYTITEKMARYAKVGELREACVAEFATGEEGAPEAGEVKELFGK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+  VVR  ++  K R+DGR  + VR I  QVG L +THGS+LF RG+TQAIV  TLG  
Sbjct: 301 IEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGM 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q++D+L G+ ++ FM+ YNF P   GE   +G+P RREIGHGRLARR +  V+P   
Sbjct: 361 RDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAVVPSVQ 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIIL 476
            FPYT+R+VSEITES+GSSSMA+VCG+S+ALMDAGVP++ PVAGIAMGLVK+ D  F +L
Sbjct: 421 DFPYTVRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGRFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA  GRLHIL EM+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHILGEMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SESR ++ +  P +  + I PD+IR+VIG GG  IR + ++TG  ++I+DDG+VKI 
Sbjct: 541 KAISESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTDETGCTIDIEDDGSVKIY 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             +  + + A   +  IT   EV  IY+G+V +V+DFGAFV      +GL+HISQ++ ER
Sbjct: 601 GETREKADEAVRRVEEITAEAEVGVIYEGKVTRVVDFGAFVAIMPGTEGLLHISQIAEER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V K +D V EG+ + VK+LD D RG+IKLSMK   ++
Sbjct: 661 VEKVTDYVNEGEIIKVKVLDVDQRGRIKLSMKEAKED 697


>gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
           parainfluenzae T3T1]
          Length = 712

 Score =  802 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/691 (48%), Positives = 474/691 (68%), Gaps = 2/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LE G IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+  SAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGTSAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI + AK   K     +  +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK  R +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITAEDEEISEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  A+F
Sbjct: 361 AQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + ++ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 PAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  +     I  I    E   IYKG+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 SSAAKNVMARIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SD ++ G  V VK+++ D +G+I+L+MK +
Sbjct: 661 VSDYLQVGQEVTVKVVEIDRQGRIRLTMKDL 691


>gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
           SC2]
 gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
           SC2]
          Length = 700

 Score =  802 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/690 (47%), Positives = 458/690 (66%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE++  GR L LETGR+A+Q++ AV  +YGETVVL TV   R  KD  DFFPLTVNY+
Sbjct: 3   QRVEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL SR+ DR IRPLF + ++N+ QV+  VM  D + 
Sbjct: 62  ERLYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P + +M+  SAAL +S +PF GP+ G  V  +NGQ+V+NP + +     L L V+GT+D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSDLYLVVAGTKD 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A++MVE E +++ E+V+L+AI+FGH+E K ++  I +L ++  KE + +       K+  
Sbjct: 182 AIMMVEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNS 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           E+     + L  +  I EK+ R + ID + ++ V++F +++    E   ++  V  DI  
Sbjct: 242 EVRAYAADRLVEAVKIAEKHARQEAIDAVNEETVAHFEAQYIETPELLSDVSEVLYDIVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++   KVR DGR  + +R I +   +L RTHGS LF RG TQA+ V TLG   D 
Sbjct: 302 EEVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P   +FP
Sbjct: 362 QILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   +L+DI 
Sbjct: 422 YTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI GI  NI+  AL+QA+ GRL IL +M + + 
Sbjct: 482 GMEDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRNILQDALKQAREGRLFILGKMMEAIQ 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R QL  + P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++ 
Sbjct: 542 KPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTNQ 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              E AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK 
Sbjct: 602 EMNEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DV+  GDT+ VK+ + D +G++ LS K V
Sbjct: 662 EDVIAIGDTITVKVTEIDQQGRVNLSRKAV 691


>gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Paenibacillus polymyxa E681]
 gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) [Paenibacillus polymyxa E681]
          Length = 700

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/690 (47%), Positives = 458/690 (66%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE++  GR L LETGR+A+Q++ AV  +YGETVVL TV   R  KD  DFFPLTVNY+
Sbjct: 3   QRVEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL SR+ DR IRPLF + ++N+ QV+  VM  D + 
Sbjct: 62  ERLYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
            P + +M+  SAAL +S +PF GP+ G  V  ++GQ+V+NP + +     L L V+GT+D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTKD 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A++MVE E N++ E+V+L+AI+FGH+E K ++  I +L ++  KE + +       K+  
Sbjct: 182 AIMMVEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNS 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           E+     E L  +  I EK+ R + ID + ++ V++F S++    E   ++  V  DI  
Sbjct: 242 EVRAYAAERLMEAVKIAEKHARQEAIDAVNEETVAHFESQYIETPELLSDVSEVLYDIVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++   KVR DGR  + +R I +   +L RTHGS LF RG TQA+ + TLG   D 
Sbjct: 302 EEVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P   +FP
Sbjct: 362 QILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   +L+DI 
Sbjct: 422 YTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QAK GRL IL++M + + 
Sbjct: 482 GMEDHLGDMDFKVAGTAEGVTAIQMDIKINGIDRQILQDALKQAKEGRLFILSKMMEAIQ 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R QL  + P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++ 
Sbjct: 542 KPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTNQ 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              E AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK 
Sbjct: 602 EMNEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DV+  GDT+ VK+ + D +G++ LS K V
Sbjct: 662 EDVIAIGDTITVKVTEIDQQGRVNLSRKAV 691


>gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894]
          Length = 690

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/677 (49%), Positives = 467/677 (68%), Gaps = 5/677 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT+NYQERTYA G+IPGG+ RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH + + VI+ I+ L K   K       +  ++ L   +  + +  L  +  I +
Sbjct: 182 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
           K  R  QID +K  +++   +E +     +E E+  +   I+  VVR+ +L  + R+DGR
Sbjct: 242 KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDGR 301

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
           + + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F+ H
Sbjct: 302 EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDRFLFH 361

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           YNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSSS
Sbjct: 362 YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSS 421

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           MA+VCG+SLALMDAGVPI   VAGIAMGLVK+G++F++LSDI GDEDHLG MDFKVAG+ 
Sbjct: 422 MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGSR 481

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            GITA+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + +F PR+  + 
Sbjct: 482 EGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIK 541

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I PD+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   
Sbjct: 542 ISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 601

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ 
Sbjct: 602 EVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 661

Query: 678 DDRGKIKLSMKVVDQNT 694
           D +G+++LS+K   + T
Sbjct: 662 DRQGRVRLSIKEATEQT 678


>gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
 gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
          Length = 747

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/697 (48%), Positives = 478/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SGLPF GP+  A+V YING+YVLNP   + + S +DL V+
Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QL E+V+L A++FGH + K  I+AI  L +   K      +     
Sbjct: 183 GTESAVLMVESEAQQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++ ++ +  LR +     K VR          + +  + +  +++  ++  +  DI
Sbjct: 243 ALIAKVVELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A +VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT  
Sbjct: 303 EAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   +
Sbjct: 363 DAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ EAA+  I  IT   E+ KIY+G +VK+++FGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 DGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           K +D ++EG  V VK+L+ DD+G++KLSMK + +   
Sbjct: 663 KVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPA 699


>gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma
           proteobacterium HTCC2148]
          Length = 703

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/692 (48%), Positives = 465/692 (67%), Gaps = 4/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T   ++  + + LETGRIARQ+ G+VL T   T VL TVV +++ + G+DFFPL V
Sbjct: 1   MNPVTKTFQYGDQTVTLETGRIARQATGSVLVTVENTSVLCTVVAEKTQRPGRDFFPLAV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+TY+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  VM  D
Sbjct: 61  HYVEKTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDE-DQGSLDLFVS 179
               P + +M+  SAAL +SG PF GP+ GA+V + + + Y+LNP  ++ ++  LD+ V+
Sbjct: 121 KHIDPDIPAMIGTSAALAISGAPFNGPIGGARVGFSDEKGYILNPTYEQLEESKLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT DAVLMVE EA +LSED +L A++F H E + V++AI++L     K      + +   
Sbjct: 181 GTADAVLMVESEAKELSEDQMLGAVLFAHQEMQTVVQAINELVAESGKPKWDWQADEINE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L   +   +K DL  +  I EK  R +++ +++   +   + E    +  EI  +F+ +
Sbjct: 241 ELLAAVEGQVKNDLGEAYRITEKSARYERVGEVRSACLEALAVEGGP-SADEIKDIFKSV 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  +L  + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI  VTLG+  
Sbjct: 300 EKSLVRKRILAGEPRIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTR 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRRE+GHGRLARR +  VLP   +
Sbjct: 360 DAQIIDALHGERRDPFMLHYNFPPYSVGEAGRVGFTSRREVGHGRLARRGLAAVLPNQEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VC  SL LM AGVP+  PVAGIAMGLVKDG+ F +L+D
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCAGSLGLMAAGVPLKAPVAGIAMGLVKDGNQFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI+  IM  AL QA+  RLHIL +M++V
Sbjct: 480 ILGDEDHLGDMDFKVAGTAEGITALQMDIKIEGITAQIMETALDQAQHARLHILGQMNEV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+E R    E  P +  + +  D+IR++IG GG  IR I EQ+GA V+IDDDGTV+I   
Sbjct: 540 LAEGRTVTSENAPSMMTLKVDSDKIRDIIGKGGATIRSITEQSGATVDIDDDGTVRIFGQ 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A  M+  IT   +V  +Y G V +++DFGAFV+    +DGLVHISQ++ ERV 
Sbjct: 600 DQMARDKAVAMVEEITAEADVGAVYTGTVARIVDFGAFVNILPGKDGLVHISQIANERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             +D + EG  V VK+LD D RG+IKLS+K +
Sbjct: 660 NVTDYLSEGQEVKVKVLDVDQRGRIKLSIKEL 691


>gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 701

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/693 (49%), Positives = 477/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSP 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 701

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/693 (49%), Positives = 477/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           W619]
 gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619]
          Length = 701

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/693 (48%), Positives = 474/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA    K       +   
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +     I  K  R  ++ +L+ + ++ FS E    +  E+  +F +
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 697

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/694 (45%), Positives = 456/694 (65%), Gaps = 7/694 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWA +PL +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWANQPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF   Y+++ Q+I  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             SP + +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ ++  LDL V+G 
Sbjct: 123 NCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI+FGH E K +     ++      E    I  +    L
Sbjct: 183 KDAVNMVEAGASEITEAEMLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFIPEEKNQTL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            + ++QM K++ L  +    +K  R   +D +K+++++ F +E    NE    E+ ++  
Sbjct: 243 IDSVTQMTKDENLNGAIQTFDKQERDANLDAIKERILANFENEEDPENEALLKEVGTIIN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +    VR ++ D+K+R DGR  + +R +S++VGLL R HGS LF RG TQA+ V+TLG+
Sbjct: 303 TLIKDEVRRLIADEKIRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGS 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P  
Sbjct: 363 ISEYQIIDGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDE 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   + + IL
Sbjct: 423 KTFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G+++ ++  AL+QA++GRL IL  M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTTEGITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMM 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+VEIM I P++IR+VIG GGK I  I++ TG K++I+ DGTV I 
Sbjct: 543 QTIDQPRKELSAYAPKVEIMQIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    I  AR  I SI    EV ++Y  +V ++  FGAFV     +D LVHISQ+S ER
Sbjct: 603 STEQDMINQARAWIESIVREAEVGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISNER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + K  DV+  GDT+ VK+ + D +G++  S KV+
Sbjct: 663 INKVEDVLNMGDTLKVKVTEIDKQGRVNASHKVL 696


>gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
 gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
          Length = 707

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/698 (49%), Positives = 483/698 (69%), Gaps = 4/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG +ARQ+  AV+A+  +T V  +VV  ++  +GQDFFPLTV
Sbjct: 1   MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            + +P +++M+A SAAL +SGLPF GP+  A+V ++N Q+VLNP   E ++  LDL VSG
Sbjct: 121 PDVNPDMITMIATSAALAISGLPFNGPIGAARVGFVNDQFVLNPSNTELEESRLDLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T+DAVLMVE EA++LSE+ +L A+++GH++ + VI AI++ A   A       +    ++
Sbjct: 181 TKDAVLMVESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVVNAE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+  ++   +  L  +  I EK  R  ++  +K  +V+   +E  + +E E+  +   ++
Sbjct: 241 LKARVADKAETRLSDAYQITEKMARYDEVGSIKNDVVTSLLAEDETLDERELRGMLSSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+ D
Sbjct: 301 KNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   +F
Sbjct: 361 AQIIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M   +
Sbjct: 481 LGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +F PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA++ 
Sbjct: 541 GSHRDDISQFAPRIHTMKISSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATE 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + A   I  IT   EV +IY G+V++++DFGAFV   GA++GLVHISQ++ ERV K
Sbjct: 601 GAAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQNTG 695
            SD ++ G  V VK+L+ D +G+I+LSMK  V DQN  
Sbjct: 661 VSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQNPA 698


>gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           155-74]
          Length = 690

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/674 (49%), Positives = 467/674 (69%), Gaps = 2/674 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH + + VI+ I++L K   K       +  ++ L   ++ + +  L  +  I +
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K + ++   +E  + +E E+  +   I+  VVR+ +L  + R+DGR+ +
Sbjct: 242 KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F+ HYNF
Sbjct: 302 MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 661

Query: 681 GKIKLSMKVVDQNT 694
           G+I+LS+K   + +
Sbjct: 662 GRIRLSIKEATEQS 675


>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           SK119]
 gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           SK119]
          Length = 698

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/696 (45%), Positives = 461/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G YV+NP L++ +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++ +     +   I  +   +L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVEHIQPVKKEFIPVERDEEL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            + +  + +E  L+ +    +K  R + +D LK ++ + F  E    NE    E+ ++  
Sbjct: 243 VQRVKSLTEEKGLKETVLTFDKQQRDENLDALKAEIATEFVDEADPENELLIDEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEIEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 TEFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+VEIM I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRSELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I  ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S +R
Sbjct: 603 AVDQEMINRAREIINEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S KV+D+
Sbjct: 663 INKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLDE 698


>gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 701

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 698

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/696 (45%), Positives = 461/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G YV+NP L++ +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++ +     +   I  +   +L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVEHIQPVKKEFIPVERDEEL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            + +  + +E  L+ +    +K  R + +D LK ++ + F  E    NE    E+ ++  
Sbjct: 243 VQRVKSLTEEKGLKETVLTFDKQQRDENLDALKAEIATEFVDEADPENELLIDEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLIKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEIEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 TEFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+VEIM I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRSELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I  ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S +R
Sbjct: 603 AVDQEMINRAREIINEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S KV+D+
Sbjct: 663 INKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLDE 698


>gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 713

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/690 (49%), Positives = 479/690 (69%), Gaps = 2/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  ++GQDFFPLTVNY
Sbjct: 10  PTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNY 69

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER YA G+ PGG+ RRE RP E E LI+R+IDR IRPLF + + NE QV+  V+  + +
Sbjct: 70  QERAYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQ 129

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            SP +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  Q  LDL V+GT 
Sbjct: 130 VSPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTD 189

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           +AVLMVE EA+ LSED +L A++FGH++ + VIE I  LA    K      + + +  L+
Sbjct: 190 NAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNTALQ 249

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + +S+M +  L  +  I EK  R  ++D++K+ +++   +E +S + GEI  +   ++  
Sbjct: 250 QRVSEMAEARLGEAYHITEKQARYAKVDEIKESVIADLLAEDASLDAGEISDILGALEKS 309

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 310 VVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQ 369

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 370 NIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQEEFPY 429

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+ D+F++LSDI G
Sbjct: 430 TVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQDNFVVLSDILG 489

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL+ M + ++ 
Sbjct: 490 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINA 549

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++   
Sbjct: 550 PRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGD 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +
Sbjct: 610 KAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 669

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           D ++ G  V VK+L+ D +G+++LS+K  +
Sbjct: 670 DYLQMGQEVAVKVLEVDRQGRVRLSIKEAN 699


>gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
           UMN179]
 gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
           UMN179]
          Length = 718

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/694 (48%), Positives = 478/694 (68%), Gaps = 5/694 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
             + ++    + LETG +ARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQE
Sbjct: 5   VKQFKYGQHTVTLETGAMARQATAAVMASMDDTCVFVTVVAKKEVKEGQDFFPLTVNYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R+YA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  + + S
Sbjct: 65  RSYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQIS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDA 184
           P +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + ++ Q  LDL V+GT  A
Sbjct: 125 PDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLDLVVAGTDKA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLEEE 243
           VLMVE EA+ L+E+ +L A++FGH + + VIEAI + A    K      +      L   
Sbjct: 185 VLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAAEAGKPRWDWQAPAKNEALINR 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN---EGEIVSVFEDIQA 300
           + ++ +  L  +  I EK  R +QID +K  + +   +E+S      EG+I+ +  ++++
Sbjct: 245 IKELSEARLGEAYRITEKQARYEQIDVIKADVCATVLAENSEDESITEGKIIDIIHELES 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +VVR+ +L  + R+DGR  +TVR +    G+L RTHGS++F RG+TQ++ V TLGT  D 
Sbjct: 305 RVVRSRILAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 365 QIIDELTGERTDHFLFHYNFPPYSVGETGLIGSPKRREIGHGRLAKRGVAAVMPTLEEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEITES+GSSSMA+VCG+SL+LMDAGVPI   VAGIAMGLVK+ D F++LSDI 
Sbjct: 425 YVVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HILN M + + 
Sbjct: 485 GDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILNVMEQAIQ 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++  
Sbjct: 545 TPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAATDN 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +A    I  I    EVNKIY+G+V +++DFGAFV   G ++GLVHISQ+S ERV K 
Sbjct: 605 NAAKAVMSRIEDIVAEVEVNKIYQGKVTRIVDFGAFVVVLGNKEGLVHISQISDERVEKV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           SD ++ G  V VK+++ D +G+I+L+MK +    
Sbjct: 665 SDYLQVGQEVMVKVVEIDRQGRIRLTMKDLQPKA 698


>gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR5-3]
 gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR5-3]
          Length = 704

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/697 (48%), Positives = 476/697 (68%), Gaps = 4/697 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T   ++ G+ + LETGRIARQ+ GAVL T   T VL TVV +++ ++G+DFFPL V
Sbjct: 1   MNPVTKTFQYGGQTVTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+ Y+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QVI  VM  D
Sbjct: 61  HYIEKAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVICTVMSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVS 179
               P + +M+  SAAL +SG PF GP+  A+V + + + Y+LNP  D+  GS L++ V+
Sbjct: 121 KHIDPDIPAMIGTSAALAISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGSKLEMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE +A+QL+ED +L A++F H E + VI+A+ +LA    K     ++    +
Sbjct: 181 GTEDAVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKPSWNWEAPAIDE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   +  M+K+DL  +  I +K  R  ++ ++++  V+  ++E    +   +   F+ +
Sbjct: 241 ALLGAVEGMVKDDLGEAYRITDKSERYARVGEIREACVAELATEGGP-SADLVKEYFKKV 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  ++  + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI  VTLG+  
Sbjct: 300 EKSMVRKRIIAGEPRIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTR 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +  VLP   +
Sbjct: 360 DAQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+D
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ V
Sbjct: 480 ILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNAV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  R    E  P +  + +  D+IR++IG GG +IR I E +GA V+I+DDGTV++   
Sbjct: 540 LAAPRTVTSENAPSMVTLKVDSDKIRDIIGKGGAMIRSITEHSGATVDIEDDGTVRVFGQ 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A  + A  MI  IT   EV  IY G+V +++DFGAFV+    +DGL+HISQ++ ERV 
Sbjct: 600 DQASRDKAVAMIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             SD + EG  V VK+LD D RG+IKLS+K + ++  
Sbjct: 660 NVSDHLSEGQEVRVKVLDVDQRGRIKLSIKELLEDEA 696


>gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 707

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/693 (48%), Positives = 476/693 (68%), Gaps = 2/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + LETG +ARQ+  AV+ T  +T V  TVV  +  ++GQDFFPLT
Sbjct: 1   MLTPTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA G+ PGG+ RRE RP E E L +R+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VNYQERAYAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP +DE  Q  LDL V+
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT +AVLMVE EA+ LSED +L A++FGH++ + VIE I  LA    K      + + + 
Sbjct: 181 GTDNAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWHAPEVNV 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  +++M +  L  +  I EK  R  ++D++K+ ++    +E  + + GEI  +   +
Sbjct: 241 ALQHRVAEMAEARLGEAYHITEKQARYAKVDEIKESVIVDLLAEDDALDAGEISDILGAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKAVVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L+G + + F++HYNF P + GE   MG+P RREIGHGRLA+R +  V+P    
Sbjct: 361 DAQNIDELTGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDA 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R  + EF PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKIA++
Sbjct: 541 INAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I  IT   EV +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV 
Sbjct: 601 DGDKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K +D ++ G  V VK+L+ D +G+++LS+K  +
Sbjct: 661 KVTDYLQMGQEVAVKVLEVDRQGRVRLSIKEAN 693


>gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius ED99]
          Length = 697

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/694 (45%), Positives = 456/694 (65%), Gaps = 7/694 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWA +PL +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWANQPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF   Y+++ Q+I  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             SP + +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ ++  LDL V+G 
Sbjct: 123 NCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI+FGH E K +     ++      E    I  +    L
Sbjct: 183 KDAVNMVEAGASEITEAEMLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFIPEEKNQTL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            + ++QM K++ L  +    +K  R   +D +K+++++ F +E    NE    E+ ++  
Sbjct: 243 IDSVTQMTKDENLNGAIQTFDKQERDANLDAIKERILANFENEEDPENEALLKEVGTIIN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +    VR ++ D+K+R DGR  + +R +S++VGLL R HGS LF RG TQA+ V+TLG+
Sbjct: 303 TLIKDEVRRLIADEKIRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGS 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P  
Sbjct: 363 ISEYQIIDGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDE 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   + + IL
Sbjct: 423 KTFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G+++ ++  AL+QA++GRL IL  M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTTEGITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEHMM 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+VEIM I P++IR+VIG GGK I  I++ TG K++I+ DGTV I 
Sbjct: 543 QTIDQPRKELSAYAPKVEIMQIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    I  AR  I SI    EV ++Y  +V ++  FGAFV     +D LVHISQ+S ER
Sbjct: 603 STEQDMINQARAWIESIVREAEVGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISNER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + K  DV+  GDT+ VK+ + D +G++  S KV+
Sbjct: 663 INKVEDVLNMGDTLKVKVTEIDKQGRVNASHKVL 696


>gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 704

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/696 (50%), Positives = 483/696 (69%), Gaps = 4/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF+GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLMVE EA+ LSE+V+L A+ FGH E + VI  I++L      +P    +   +  + 
Sbjct: 183 NAVLMVESEADLLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + + + L  +  + +K  R   I  +KK ++   +       W  G++   F +++
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR ISA  G+L RTHGS+LF RG+TQAIV+ TLGT  D
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             D +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|239994336|ref|ZP_04714860.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
           ATCC 27126]
          Length = 724

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/694 (47%), Positives = 467/694 (67%), Gaps = 2/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+  AVLA+  +T VL TVV  +  K  QDFFPLTVNY
Sbjct: 24  PITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKADQDFFPLTVNY 83

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + +KNE QV++ VM  + +
Sbjct: 84  QEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMSANPD 143

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
               ++SM+  SAAL +SG+PF GP+  A+V + NG+Y+LN R +E  +  LDL V+GT+
Sbjct: 144 IPTDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVVAGTE 203

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLE 241
            AVLMVE EA+ LSED +L A++FGH + + V+ A+++ A     E        + + L+
Sbjct: 204 GAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDWAPEAENTALK 263

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +++  + + ++  +  I +K  R   +    +K +    +E    ++ E++ +  D+++ 
Sbjct: 264 DKVKALAEAEMTAAYQISDKLERKDAVTAATEKALEAILAEDEEQDKKEVLDLLHDLESD 323

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L    R+DGRD   +R +    G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 324 VVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTERDAQ 383

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY
Sbjct: 384 MIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPY 443

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  D+F++LSDI G
Sbjct: 444 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILG 503

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHILN M + +  
Sbjct: 504 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGG 563

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L EF PR+  M I  D+IR+VIG GG +IR I E++   + I+DDGT+KI ++  A
Sbjct: 564 HREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATERA 623

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  +T   EV K Y G++ +++DFGAFV     ++GLVHISQ++ ERV K +
Sbjct: 624 KADIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVT 683

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D ++EG  V VK+++ D + +++LS+K + +   
Sbjct: 684 DYLEEGQMVDVKVMEIDRQNRVRLSIKELLEKPA 717


>gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13]
          Length = 715

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/688 (45%), Positives = 464/688 (67%), Gaps = 4/688 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D     I+WAGR L +E G++A+Q++GAV+  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 14  DKQVFSIDWAGRNLTVEVGQLAKQANGAVMVRYGDTAVLSTATASKEPK-KLDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  +L SR+IDR IRPLF+  ++NE QVI  VM  D 
Sbjct: 73  YEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQ 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PF+GP+ G  V  IN ++V+NP +D+ ++  ++L V+GT
Sbjct: 133 NCSSEMAAMFGSSLALSVSDIPFQGPIAGVTVGRINDEFVINPNVDQLEKSDINLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ MVE  A+++ E+V+L+AI+FGHNE K +I    ++ +   KE   +   +  K L
Sbjct: 193 KDAINMVEAGADEVPEEVMLEAIMFGHNEIKRLIAFQEEIVQAVGKEKTEVTLYEVDKNL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
           E E+  + +E +  +  + EK+ R   I ++K ++++ +  + +  +   ++  +   + 
Sbjct: 253 EHEIRALAEEKMTKAVQVFEKHAREAAIKEVKAEVLARYEEQEAEADVLKQVNEILSMLV 312

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++ + KVR DGR S+ +R ++++VGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 313 KEEVRRLITEDKVRPDGRKSDEIRPLASEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 372

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 373 VQILDGLGIEEEKRFMHHYNFPLFSVGETGPMRGPGRREIGHGALGERALDPVIPSEKDF 432

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + +LSDI
Sbjct: 433 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKKGEHYTVLSDI 492

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S +I+  ALQQAK GR+HIL+ M   +
Sbjct: 493 QGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLSRDILEEALQQAKIGRMHILDSMLATI 552

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            ESR +L  + P++ +M+I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +
Sbjct: 553 DESRKELSPYAPKILMMSINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 612

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           +   + A+++I  I    +V +IY G+V ++  FGAFV     +DGLVHIS+L+ ERV +
Sbjct: 613 MEMNDKAKKIIEDIVREVQVGEIYMGKVKRIEKFGAFVELFSGKDGLVHISELAEERVKQ 672

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             D+VK G+ V VK+++ D +G++ LS 
Sbjct: 673 VEDIVKLGEEVLVKVMEIDKQGRVNLSR 700


>gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae 642]
          Length = 701

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 477/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TELLGAIRSEFGDAISQAYTITVKADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
           BGR1]
 gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
           BGR1]
          Length = 709

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/697 (48%), Positives = 483/697 (69%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKNAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+ QYVLNP  D+    SLDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNQYVLNPTRDQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM-----VSYFSSEHSSWNEGEIVS 293
            L   ++   + DL  +  I +K  R  ++ ++             ++  ++ ++  + +
Sbjct: 243 ALIANVTAAAQADLLAAYQIRDKQARSAKLKEVYASTSAKLEAEAAAAGTTAADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ + + F
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEDNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QAK GR+HIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +S +   L EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKESVSGANTTLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV   +D +KEG  V +K++  D++G+++LS K +
Sbjct: 663 NERVKDINDYLKEGQVVKIKVIQVDEKGRVRLSAKAL 699


>gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
          Length = 699

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/697 (44%), Positives = 458/697 (65%), Gaps = 7/697 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V Y++G YV+NP ++E +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++      E    I  +    L
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPEKQEFIPVERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFE 296
            E++  + +E  L+ +    +K  R + +D LK+++V++F  E    NE    E+ ++  
Sbjct: 243 VEKVKALTEEKGLKETVLTFDKQQRDENLDALKEEVVAHFIDEEDPENEALINEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIADEKIRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDHPRKELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I+ A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER
Sbjct: 603 AVDQAMIDRAKEIIEDITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISKER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           + K  DV+  GD++ VK+ + D +G++  S K +  +
Sbjct: 663 INKVEDVLNIGDSIEVKITEIDKQGRVNASHKALLDD 699


>gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21]
 gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21]
          Length = 696

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/693 (50%), Positives = 476/693 (68%), Gaps = 3/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VHTV+ E  G+ + +ETG+IA+Q+ GAV+   G+T+VL T V  +S K+GQ FFPLTVNY
Sbjct: 2   VHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE RP++NE L  R+IDR IRPLF + + N+TQV+  V+  D +
Sbjct: 62  QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P ++SM+ ASAALM+S  PF GP+ G +V  +NG ++ NP  +E ++  L++ ++ +Q
Sbjct: 122 NDPAILSMIGASAALMVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSDLEIVIAASQ 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           +A+LMVE  A ++SE+ +L+AI FGH   +P++ A  +LAK       VI +     +L+
Sbjct: 182 EAILMVEGSAAEVSENDLLEAIFFGHAAVQPILAAQLELAKKVGTPKRVILAPVVNEELK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + KE ++ +  I  K  R   ID +  + V+  ++E    +E E+    ED++  
Sbjct: 242 ARVAALAKEGMKQAVRIKTKVERHLAIDAITAETVAALAAEFEG-SEKEVKGFIEDLEYD 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  ++    R+DGRD++T+R IS +V LL R HGS+LF RG+TQ+IV  TLGT  DEQ
Sbjct: 301 LVREHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RA+  VLP+   FPY
Sbjct: 361 RIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+ITES+GSSSMATVCG SL++MDAG+PI  PVAGIAMGL+K+GDDF ILSDI G
Sbjct: 421 TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM  AL QAK GR+HIL EM+K ++ 
Sbjct: 481 DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIAA 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR  L  F PR+  + +  D+IR+VIG GGK IR + E TG  ++IDD G + IAS++  
Sbjct: 541 SRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIASTNKE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MIR++T   E  K+Y G V K+M+FGAFV      DGLVH+S+L TERV   S
Sbjct: 601 ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D++KEGD V VK +  D +GKIKLS K     T
Sbjct: 661 DILKEGDKVLVKCIGIDKQGKIKLSRKEALGQT 693


>gi|71083097|ref|YP_265816.1| polynucleotide phosphorylase/polyadenylase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|123734390|sp|Q4FNM6|PNP_PELUB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71062210|gb|AAZ21213.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 690

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/693 (53%), Positives = 509/693 (73%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V+  EIE AG+ + LETG++ARQ+DGA++A+ GETV+LATVV  + +    D+FPL+
Sbjct: 1   MFKVYKKEIEVAGKKISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE+E LISR+IDR IRPLF   +KNE Q++  V+ +
Sbjct: 61  VNYQEKYYAGGKIPGGYFKREARPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D ++ P ++++ A+SAAL +SG+PF GPV  ++V  ++G+Y+LNP   E + S LDL V+
Sbjct: 121 DKDNQPDILAITASSAALAISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE E + L+E+V+LDA+ FGH    PVIE I +LAK C K    ++ KD S+
Sbjct: 181 GTKDAVLMVESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRKPEWTVEKKDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ +   EDL  +    +K  R  QI ++  K    F ++  ++++  +    ++++
Sbjct: 241 VKKKLEENFTEDLTKAFATIDKQDRSNQISEISDKAKQLF-ADDENYSDFNVNDELKNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L  K R+DGR    VR I  +VG+L RTHGS+LF RG+TQAIVV TLGT +D
Sbjct: 300 KKIVRTDILKNKKRIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ ++SL G  R  FM+HYNF P + GE  R+G   RRE+GHG+LA RAI+  LP   +F
Sbjct: 360 EQRLESLDGQHRERFMLHYNFPPFSVGETGRIG-TGRREVGHGKLAWRAINSSLPPKEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF +LSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMASVCGASLALMDAGVPIKEPVAGIAMGLIKEGDDFSVLSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+  IM  AL+QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMEQALKQAKEGRIHILGEMNKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR  +GE TP++E + +    I  VIG GG  IR IVE++GAK++++D+G V +A+  
Sbjct: 539 SESRADVGEHTPKMEQITVDKKDIAAVIGKGGATIREIVEKSGAKLDVNDEGVVTVAAPD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +MI+ IT   E+NKIY G+V+K+M+FGAFV+F G +DGLVHIS+L+T+RV K
Sbjct: 599 EESRNIAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELATKRVEK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +D+VKEGD V VK++ FD RGK+KLSMK   +
Sbjct: 659 VTDIVKEGDEVKVKVIGFD-RGKVKLSMKQAAE 690


>gi|119944587|ref|YP_942267.1| polynucleotide phosphorylase/polyadenylase [Psychromonas ingrahamii
           37]
 gi|187611274|sp|A1ST53|PNP_PSYIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119863191|gb|ABM02668.1| Polyribonucleotide nucleotidyltransferase [Psychromonas ingrahamii
           37]
          Length = 698

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/693 (48%), Positives = 470/693 (67%), Gaps = 2/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 ++    + LETG +ARQ+  AV+ +  +T V  +VV   +    +DFFPLTVNY
Sbjct: 3   PIVKSFQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR +RPLF   +KNE QVI  V+  + E
Sbjct: 63  QEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSINPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            +P VV+M+A SAAL +SG+PF+GP+  A+V Y  G+Y+LNP   E +   L+L VSGT 
Sbjct: 123 VNPDVVAMIATSAALSISGMPFKGPIGCARVGYKEGEYLLNPTKTELETSDLNLVVSGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
           +AVLMVE EA  LSEDV+L A++FGH++ + V+E+I + A   A+      +      L+
Sbjct: 183 NAVLMVESEAGILSEDVMLGAVVFGHDQQQIVVESIKEFAAEVARPAWNWAAPARNEALD 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++   +     +  I +K  R   I  +  ++     +   +    +I     D++  
Sbjct: 243 AAIATEAQARFEQAYQISDKGDRYDAIKAITSEVKEKLLASDETLEAKQIGEYLHDLEKT 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVRT ++  + R+DGRD E++R +  + G+L RTHGS+LF RG+TQA+V  TLGT+ D Q
Sbjct: 303 VVRTRIIKGEPRIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G ++++F++HYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +FPY
Sbjct: 363 IIDSIMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPSLEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+G++F++LSDI G
Sbjct: 423 TVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGEEFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + L +
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITREIMQIALNQAKAARLHILTVMDQALPQ 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + +F PR+  + I  D+IR+VIG GG VIR + E+TG  + I+DDGTVKIA++S  
Sbjct: 543 GRADISQFAPRIHTIKINTDKIRDVIGKGGAVIRSLCEETGTTIEIEDDGTVKIAATSGE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I+++T   EV  IY G+VV++ DFGAFV+    +DGLVHISQ+  ERV K S
Sbjct: 603 QADDAINRIKALTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVS 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D +KEG  V VK+L+ D +G+++LS+K   + T
Sbjct: 663 DHLKEGQEVKVKVLEVDRQGRVRLSIKEAAEKT 695


>gi|182680754|ref|YP_001828914.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M23]
 gi|187611441|sp|Q87EV0|PNP_XYLFT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704834|sp|B2I730|PNP_XYLF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182630864|gb|ACB91640.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M23]
 gi|307579218|gb|ADN63187.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 700

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/694 (51%), Positives = 480/694 (69%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 63  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+IFGH E + VI+ I  L A+ C +    +       L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDALV 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
             + ++I   L  +  I +K  R   I  +K  ++   +   E   WN  E++  F +++
Sbjct: 243 IALKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D
Sbjct: 303 YRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R G P RREIGHGRLARR +  V+P   +F
Sbjct: 363 GQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L
Sbjct: 483 LGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR+VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 AAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +
Sbjct: 603 NAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVER 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 663 VGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
 gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
          Length = 701

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/701 (48%), Positives = 479/701 (68%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++    + +ETG IARQ+ GAV  + GETVVL  V  ++ +K GQDFFPLT
Sbjct: 1   MFNKHVKSFQYGQHTVTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG+YVLNP   +  +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GHNE + VI AI++LA     E     + +  +
Sbjct: 181 GTAQAVLMVESEAQILPEDVMLGAVVYGHNEMQAVIRAINELADAVNPEVWDWKAPETDA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
            L  ++ ++  + +  +  I +K  R  ++D+    + +   +E +      +I  +F+ 
Sbjct: 241 ALVAKVQEIAGQTVAEAFKIRQKQARTAKLDEAWAAVEAALITEDTDTLAANQIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L  + R+DGRD+ TVR I+ Q G+L RTHGS+LF RG+TQA+ V TLGT+
Sbjct: 301 LEANVVRSQILAGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGE  RMGAP RREIGHGRLA+RA+  VLP   
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLGVLPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L +  PR+  M I  D+IR+VIG GG+ IR +  +TG ++NI+DDGT+ IA+
Sbjct: 541 AVAGP-QELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
            ++  +EAAR+ I  IT   EV ++Y G V+K++D   GA V     +DGLVHISQ++ E
Sbjct: 600 VNVEAVEAARKRIEEITAEVEVGQVYNGVVIKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RV   +D ++ G  V VK L+ DDRG+++LSMK +   T +
Sbjct: 660 RVKDVNDYLRVGQNVRVKALEVDDRGRVRLSMKALLDQTRE 700


>gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis RP62A]
 gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU028]
 gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU045]
          Length = 701

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/698 (45%), Positives = 462/698 (66%), Gaps = 9/698 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP + + +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSK 239
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++       K+  V   +D   
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPIKQEFVPVERD-ED 241

Query: 240 LEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVF 295
           L E++  + ++  L+ +    +K  R + +D LK+++V +F  E    NE    E+ ++ 
Sbjct: 242 LVEKVKSLTEDKGLKDTVLTFDKQQRDENLDALKEEVVGHFLDEEDPENETLVKEVYAIL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG
Sbjct: 302 NDLIKEEVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P 
Sbjct: 362 ALGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPD 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           T  FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + I
Sbjct: 422 TQDFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M
Sbjct: 482 LTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              + + R +L  + P+V  M+I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I
Sbjct: 542 LHTIEQPREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +   A I  A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S E
Sbjct: 602 GAVDQAMINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQE 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           R+ K  DV+K GDT+ VK+ + D +G++  S KV++Q+
Sbjct: 662 RINKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699


>gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 701

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/693 (48%), Positives = 478/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GP+  A+V +     Y+LNP  ++ +  SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI A+ +LA   AK       + + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQAEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +  +  I  K  R  ++ +LK ++V+  S E    +  ++ + F +
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L E  P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 701

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU144]
          Length = 701

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/698 (45%), Positives = 462/698 (66%), Gaps = 9/698 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP + + +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSK 239
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++       K+  V   +D   
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPIKQEFVPVERD-ED 241

Query: 240 LEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVF 295
           L E++  + ++  L+ +    +K  R + +D LK+++V +F  E    NE    E+ ++ 
Sbjct: 242 LVEKVKSLTEDKGLKETVLTFDKQQRDENLDALKEEVVGHFLDEEDPENETLVKEVYAIL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG
Sbjct: 302 NDLIKEEVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P 
Sbjct: 362 ALGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPD 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           T  FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + I
Sbjct: 422 TQDFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M
Sbjct: 482 LTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              + + R +L  + P+V  M+I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I
Sbjct: 542 LHTIEQPREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +   A I  A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S E
Sbjct: 602 GAVDQAMINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQE 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           R+ K  DV+K GDT+ VK+ + D +G++  S KV++Q+
Sbjct: 662 RINKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699


>gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 701

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/693 (49%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V ++D D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVMDVDNRGRIKLSIKDV 693


>gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 701

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEDGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYIGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|197336129|ref|YP_002155245.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
 gi|226704830|sp|B5FA83|PNP_VIBFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|197317619|gb|ACH67066.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
          Length = 709

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/696 (48%), Positives = 480/696 (68%), Gaps = 3/696 (0%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +      ++    + LETG IARQ+  AV+A+  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFANPVVKSFQYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + E +P +++M+  SAAL ++G+PF GP+  A+V +ING+ VLNP   E + S LDL V
Sbjct: 121 INPEVNPDMITMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           SGT+ AVLMVE EA+ L+E+ +L A++FGH++ + VI+AI++ A   A      +  ++ 
Sbjct: 181 SGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   ++++ +  L  +  I EK  R  +I ++  ++     SE+   N  E+ ++F D
Sbjct: 241 TVLNSRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QA+  R HIL  M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV KIY G+V++++DFGAFV   G ++GLVHISQ++ ER+
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K +D ++ G  V  K+L+ D +G+I+LS+K  +  
Sbjct: 661 EKVADHLQVGQEVKTKVLEIDRQGRIRLSIKEANAE 696


>gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii
           OhILAs]
 gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii
           OhILAs]
          Length = 706

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/693 (45%), Positives = 459/693 (66%), Gaps = 5/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF V   EI  AGR L++E G++A+ S+G+ L  YG+T VL      +S ++G DFFPL+
Sbjct: 1   MFKVFKKEI--AGRVLEVEVGKLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ YA GKIPGG+++RE RP+EN IL SR+IDR IRPLF   Y+N+ Q+I  V+  
Sbjct: 59  VDYEEKMYAAGKIPGGFIKREGRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D++ +P +V+M+ +S AL +S +PF+GP     V  ++G+ ++NP  DE +  SLDL VS
Sbjct: 119 DIDCTPDIVAMLGSSIALSISDIPFQGPTASVHVGLVDGKLLINPTSDEREHSSLDLVVS 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV+M+E  AN+++E  +L+AI+F H E K +I  I ++A    KE   + + + ++
Sbjct: 179 GTKDAVMMIEAGANEVTEAQMLEAILFAHEEIKNIISFIEEIAAEVGKEKQEVVTLEINE 238

Query: 240 LEE-EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFED 297
             E E+    K  +  +    EK  R  +I+   ++ ++YF  ++    N  +I ++ + 
Sbjct: 239 DFETEVRAYAKTRISEAIRTVEKLERNAKIELANEETINYFYEKYQEELNLKQIHTILDS 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  +  R ++L  K R D R  + +R IS +V LL +THGS LF RG TQ + +VTLG  
Sbjct: 299 ILKEETRNLILYDKKRPDDRQHDEIRPISCEVDLLPKTHGSGLFTRGQTQVLSIVTLGAI 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   +M HYNF P + GE   + +P RREIGHG LA RA+ P++P   
Sbjct: 359 GDVQILDGLGKEESKRYMHHYNFPPYSVGETKMLRSPGRREIGHGALAERALEPMIPSQD 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSE+  S+GSSS A+VCGS+L+L+DAGVP+   VAGIAMGLVK+GD   ILS
Sbjct: 419 DFPYAIRVVSEVLASNGSSSQASVCGSTLSLLDAGVPLKDMVAGIAMGLVKEGDAVAILS 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  GITA+QMD+KI GI E I+  AL+QA+ GRL+IL++M +
Sbjct: 479 DIQGMEDHLGDMDFKVAGTAKGITAIQMDIKIKGIDEPILKDALEQARVGRLYILDKMKE 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S  R +L  + PR+  M I PD+IR VIG GGK I  I+E TG K++I++DGT+ IA+
Sbjct: 539 AISSPRPELSPYAPRMLKMKIHPDKIREVIGSGGKTINKIIEDTGVKIDIENDGTIFIAA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    E A  +I +I   PE+  I+KG+V+K+M+FGAFV     ++GLVHIS L+ ERV
Sbjct: 599 QTQEAGELALSIINNIVREPEIGDIFKGKVIKLMNFGAFVEILPGKEGLVHISNLAHERV 658

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  DV+  GD + VK+++ D +GK+ LS K +
Sbjct: 659 NKVEDVLAVGDEIDVKVIEIDQQGKVSLSRKAL 691


>gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
           V453]
 gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
           V453]
          Length = 701

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/690 (47%), Positives = 448/690 (64%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE++  GRPL  ETGR+A+Q++ AV+  YGET VL TV      KD  DFFPLTVNY+
Sbjct: 3   TRVEMQLGGRPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKD-LDFFPLTVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV+  VM  D + 
Sbjct: 62  ERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P + +M+  SAAL +S +PF GP+ G  V  ++G +V+NP + + +   + L VSGT+D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDIYLVVSGTKD 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A++MVE EAN++ E+V+L+AI+FGH E K ++  I +L   C KE + +     ++ +  
Sbjct: 182 AIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNEAVNR 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           E+       L  +  I EK+ R   ID + ++  + F  ++    E   ++  V  DI  
Sbjct: 242 EVRDFAAARLVEAVRIEEKHARQDAIDAINEEAYTVFEEKYIETPELLKDVKEVLHDIVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++   KVR DGR    +R I     LL RTHGS LF RG TQA+ V TLG   D 
Sbjct: 302 EEVRRLITHDKVRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+  V+P   +FP
Sbjct: 362 QILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAG+AMGL+KDGD   IL+DI 
Sbjct: 422 YTIRLVSEVIESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  ALQQAK GR+HIL +M++ + 
Sbjct: 482 GMEDHLGDMDFKVAGTPEGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQ 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R  L ++ P++  M I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IAS++ 
Sbjct: 542 QPRTSLSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASAND 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A  +I  I     V +IY G V ++  FGAFV     +DGLVHISQLSTERVAK 
Sbjct: 602 EMNKKALSIIEGIVREVAVGEIYTGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVV  GD + VK+ + D +G+I LS K V
Sbjct: 662 EDVVAIGDVITVKVTEIDQQGRINLSRKAV 691


>gi|194366584|ref|YP_002029194.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
           maltophilia R551-3]
 gi|226702692|sp|B4SQR6|PNP_STRM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194349388|gb|ACF52511.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
           maltophilia R551-3]
          Length = 702

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/696 (50%), Positives = 478/696 (68%), Gaps = 4/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L + V  +S ++GQDFFPLT +Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + E
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
               + +++ ASAAL L+G PF+GP+  A+V Y +G+Y+LNP + E  +  L+L V+GT 
Sbjct: 123 IDGDIPALIGASAALSLAGTPFKGPIAAAKVGYKDGEYILNPTVSELKESQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           +AVLMVE EA  LSEDV+L A+ FGH E + VI AI++L      +P   ++    + L 
Sbjct: 183 NAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNTALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + +   L  +  + +K  R   I  +KK +V   +       WN  E+   F +++
Sbjct: 243 SAVQEAVGPRLGEAFQVRDKLQRRDAISAIKKDVVESLAGRVAAEGWNPAELSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +LD KVR+DGR  +TVR I+ +  +L RTHGSSLF RG+TQAIV +TLGT  D
Sbjct: 303 YSTMRNSVLDTKVRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P    F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGVLAVMPSLESF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+GD F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDRFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GI+A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHGL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S++RV K
Sbjct: 603 AIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             DV+KEGD V VK+L+ D +G+I+LSMK V++  G
Sbjct: 663 VGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEG 698


>gi|212639515|ref|YP_002316035.1| polynucleotide phosphorylase/polyadenylase [Anoxybacillus
           flavithermus WK1]
 gi|226702595|sp|B7GG69|PNP_ANOFW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212560995|gb|ACJ34050.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Anoxybacillus flavithermus WK1]
          Length = 702

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/699 (46%), Positives = 467/699 (66%), Gaps = 6/699 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGRPL +E G +A+Q++GAVL  YG+TVVL+T    +  K   DFFPLTVN
Sbjct: 4   EKHVFSIDWAGRPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPK-SVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF++ ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M  +S AL +S +PFEGP+ G  V  ++G++V+NP + + +   + L V+GT
Sbjct: 123 DCSPEMAAMFGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPSVAQMEQSDMHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  AN++ E+V+L+AI+FGH E K +I     +A    KE + +   +  ++L
Sbjct: 183 KDAINMVEAGANEVPEEVMLEAIMFGHEEIKRLIAFQEDIAAKVGKEKMEVVLYELNAEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
           E E+   ++ +++ +  +PEK  R   I+ LK ++V+ +   E       ++  +   + 
Sbjct: 243 EAEIRARVEGEVKRAVQVPEKLAREAAIEQLKAEVVAAYEEQEADEETLKQVKEILYKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++ ++KVR DGR  + +R +S+ VGLL RTHGS LF RG TQA+ V TLG   D
Sbjct: 303 KEEVRRLITEEKVRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLGIEETKRFMHHYNFPPFSVGETGAMRGPGRREIGHGALGERALEPVIPSEKEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT+ G+TA+QMD+KI G+S  I+  ALQQA++GRL IL  M + +
Sbjct: 483 QGMEDHLGDMDFKVAGTEKGVTALQMDIKIKGLSREILEEALQQARKGRLEILKHMMQTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE R +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S +
Sbjct: 543 SEPRKELSPYAPKILTMQINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 EEMNKKAKKIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFSGKDGLVHISELAEERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGK 696
             DVV  GD + VK+ + D +G++ LS K V  DQ   +
Sbjct: 663 VEDVVSIGDEILVKVTEIDKQGRVNLSRKAVLRDQKEAE 701


>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha
           JMP134]
 gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
           JMP134]
          Length = 728

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/700 (48%), Positives = 479/700 (68%), Gaps = 2/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    + +W    +++ETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKQFQWGQHTVRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SG+PF GPV  A++ Y +GQY+LNP   +     LDL V+
Sbjct: 123 NPEIPADIPALIGASAALAVSGIPFNGPVGAARIGYKDGQYLLNPTRSQMATSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI  L +   K       +    
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++++    L+ +  + +K  R +++ ++   + +  +      ++ E+ ++  D+
Sbjct: 243 ALIAKVTEVALPLLQEAYQLRQKSARSQKLKEVSANVTAALAEAGVDADKVEVGNIMFDL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +L  + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 303 EAKIVRGQILGGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 363 DEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL  M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGAMQGA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  ERV 
Sbjct: 603 STDGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVK 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              D +KEG  + VKL+  D++G+++LS+K      G  I
Sbjct: 663 DIKDWLKEGQQLRVKLIQADEKGRLRLSLKAALAEEGGSI 702


>gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
 gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
          Length = 699

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/697 (44%), Positives = 457/697 (65%), Gaps = 7/697 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADS 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V Y++G YV+NP + E +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVAEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++      E    I  +    L
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPEKQEFIPVERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG---EIVSVFE 296
            E++  + +E  L+ +    +K  R + +D LK+++V++F  E    NE    E+ ++  
Sbjct: 243 VEKVQALTEEKGLKDTVLTFDKQQRDENLDALKEEVVAHFIDEEDPENEALINEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIADEKIRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIGHPRKELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER
Sbjct: 603 AVDQAMINRAKEIIEDITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISKER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           + K  DV+  GD++ VK+ + D +G++  S K + ++
Sbjct: 663 INKVEDVLNIGDSIEVKITEIDKQGRVNASHKTLLED 699


>gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           GB-1]
 gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1]
          Length = 701

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/693 (48%), Positives = 474/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLT 60
            +      ++    + LETGRIARQ+ GAVL T   +  VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PFEGP+  A+V +     Y+LNP  ++    SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT DAVLMVE EA +L+ED +L A++F H+E + VI+A+ +LA   AK       +   
Sbjct: 181 AGTADAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWKPAVAN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +     I  K  R  ++ +L+ + ++ FS E    +  E+  +F +
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAIAKFSGEEGQPSASEVKEIFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD++TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAA++ I  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAAEAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
 gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
          Length = 712

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/703 (48%), Positives = 484/703 (68%), Gaps = 7/703 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+    E +W    ++LETG IARQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TY+ GKIPGG+ RRE RP+E+E L SR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++ ASAAL +SGLPF GPV  A+V YI+ QYVLNP  ++    SLDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDSQYVLNPTREQIKASSLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QL EDV+L A++FGH + +  I+AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-----SWNEGEIVS 293
            L   ++   +E L  +  I +K  R  ++ ++     +   ++ +       ++  + +
Sbjct: 243 ALIASITAAAQEPLLAAYQIRDKQARSTKLKEVYAATSAKLEADAAAAGTTPADKATVGN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V  DI+AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV T
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQALVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DEQ +D+L G  R  FM+HYN  P ATGE  R+G+P RRE+GHGRLA+RA+   L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALVACL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F Y++R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAGIAMGL+ +G+ F
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL+QAK GRLHIL 
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALEQAKEGRLHILG 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   +S +  QL EF PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V
Sbjct: 543 KMKGAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+S   +  A++ I  IT   EV ++Y+G V+K++DFGA V+    +DGL+HIS++ 
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLHISEIV 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            ERV   +D +KEG  V VK++  D++G+++LS K +     +
Sbjct: 663 NERVKDINDYLKEGQVVKVKVIQVDEKGRVRLSAKALLNEAAQ 705


>gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387489|sp|Q65VB0|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E]
          Length = 704

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/691 (48%), Positives = 480/691 (69%), Gaps = 2/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  +VV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQERTYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  +
Sbjct: 61  DYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + V+EAI +      K      + +  S 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAEAGKPRWDWVAPEPDSA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK VR +QID +K  +++  ++E    +EG+IV +F  ++
Sbjct: 241 LISKVKAIAENRLGDAYRITEKQVRYEQIDAIKADVIAQITAEDEEVSEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQ++ VVTLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P  ++F
Sbjct: 361 AQILDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+ D F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDDKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R ++ EF PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 SAPRAEISEFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++     I  IT   E   +Y G+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 GNAVKTVMARIEDITAEVEAGAVYTGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SD ++ G  V VK+++ D +G+I+L+M+ +
Sbjct: 661 VSDYLQVGQEVQVKVVEIDRQGRIRLTMRDL 691


>gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73]
 gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas
           albilineans]
          Length = 702

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/696 (50%), Positives = 479/696 (68%), Gaps = 4/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + + + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAGTS 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLE 241
           +AVLMVE EA  LSEDV+L A+ FGH E + VI AI++L      K    +     + + 
Sbjct: 183 NAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTAEAGTKPSDWVAPAKNAAMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + +   L  +  + +K  R   I  +KK +++  +      +W   ++   F +++
Sbjct: 243 VALKEAVGGQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAPRATAENWVAADLAKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR IS + G+L RTHGS+LF RG+TQAIVV TLGT  D
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTMEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  AL QAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TSPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             D +KEGD V VK+L+ D +G+I+LSMK V++  G
Sbjct: 663 VGDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEG 698


>gi|170729437|ref|YP_001774870.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M12]
 gi|226704835|sp|B0U1R2|PNP_XYLFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167964230|gb|ACA11240.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M12]
          Length = 700

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/694 (51%), Positives = 476/694 (68%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 63  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      EP   +       L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTEPSDWVPPAKNDALV 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
             + ++I   L  +  I EK  R   I  +K  ++   +   E   WN  E++  F +++
Sbjct: 243 IALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D
Sbjct: 303 YRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R G   RREIGHGRLARR +  V+P   +F
Sbjct: 363 GQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L
Sbjct: 483 LGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS +
Sbjct: 543 AAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +
Sbjct: 603 NAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVER 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 663 VGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
           curdlanolyticus YK9]
 gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
           curdlanolyticus YK9]
          Length = 701

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/690 (47%), Positives = 457/690 (66%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE+   GRPL LETGR+A+Q++ AV   YGETVVL TV      KD  DFFPLTVNY+
Sbjct: 3   QKVELTLGGRPLVLETGRLAKQANAAVTVRYGETVVLCTVTASSEPKD-LDFFPLTVNYE 61

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF   ++N+ Q++  VM  D + 
Sbjct: 62  EKLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPDGFRNDVQIVNLVMSVDQDC 121

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           SP + +M+  SAAL +S +PF GP+ G  V  I+GQ+V+NP ++++ Q  + + V+GT+D
Sbjct: 122 SPEIAAMIGTSAALSISDVPFNGPIGGVVVGRIDGQFVINPTVEQEAQSDIFVVVAGTKD 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A++MVE EA+++ E V+L+AI+FGH+E K ++++I +   +  K  + +      + +  
Sbjct: 182 AIMMVEAEADEVPESVMLEAIMFGHDEIKNIVKSIEEFQSIAGKTKMEVKLHAVDEQVNA 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQA 300
           ++     E L  +  I EK+ R   ID +  + V++F+  ++   E   ++  V  DI  
Sbjct: 242 DVRAYASERLTQAIRIAEKHARQDAIDAINVETVAHFNEIYAETPELMDDVKEVLYDIVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++   KVR DGR    +R I   V LL RTHGS LF RG TQA+ + TLG   D 
Sbjct: 302 EEVRRLITHDKVRPDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALSICTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +S  +   FM HYNF P + GE   +  P RREIGHG L  RA+  V+P  ++FP
Sbjct: 362 QILDGISPEESKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIPPESEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE  ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+KDG+ F ILSDI 
Sbjct: 422 YTIRLVSECLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGEHFSILSDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QAK GR+HIL +M +V+ 
Sbjct: 482 GMEDHLGDMDFKVAGTAEGVTAIQMDIKIEGIDRAILTQALEQAKEGRMHILGKMLEVMG 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R  L ++ P++  + I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+ 
Sbjct: 542 EPRKNLSKYAPKIMTLRINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGMVYIASSNE 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + AR +I  I     V +IY G V ++  FGAFV     +DGLVHISQ+STER+AK 
Sbjct: 602 EMNQKARAIIEGIVKEVVVGEIYLGTVKRIEKFGAFVEILPNKDGLVHISQVSTERIAKI 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DV+K GD + VK+ + D +G+I LS K V
Sbjct: 662 EDVLKIGDQITVKVTEIDQQGRINLSRKAV 691


>gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus
           DSM 2379]
 gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus
           DSM 2379]
          Length = 706

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/687 (48%), Positives = 462/687 (67%), Gaps = 3/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V++E+ G+ + + TG++A+Q++GAV+   G+T+VL T V  +  K+GQDFFPLTVNY 
Sbjct: 3   HVVDVEFGGKMVTISTGKMAKQANGAVVVKSGDTMVLVTAVAQKEAKEGQDFFPLTVNYT 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPG + RRE+RP++ E L  R+IDR IRPLF + + N+TQ+I  V+  D + 
Sbjct: 63  EKAYAGGKIPGSFFRREARPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDH 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P ++SM+ ASAAL +S +PF+GP+ G +V  ++G+ + NP  DE +   +++ V+ ++D
Sbjct: 123 DPRILSMLGASAALEVSDIPFQGPIAGVKVGRVDGRLICNPTADELELSDMEIVVAASRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           A++MVE EA  +SED +LDAI FGH   +PV+EA  KL ++       +        L  
Sbjct: 183 AIIMVEGEARFVSEDDMLDAIFFGHAAVQPVLEAQEKLKQLAGVAKRDVPPPVVDQALLA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + ++  E +  +  I  K  R  QID +  +  +  ++E    NE +I +   D++ + 
Sbjct: 243 RVRELASERMSAAVKIKSKQERHNQIDLITAETTASLAAEFEG-NEKQIRAFLGDLEYEC 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L+  VR+DGRD+ T+R I+ + GLL RTHGS+LF RG+TQA+VV TLGT  DEQ 
Sbjct: 302 VRADVLNSGVRIDGRDTVTIRPIATEAGLLPRTHGSALFTRGETQALVVTTLGTSSDEQR 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DSL G  R  F++HYNF P + GE S    P RREIGHG LA RA+  +LP+   FPYT
Sbjct: 362 MDSLYGEYRKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALSAILPKHDDFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSE  ES+GSSSMA VCG  ++LMDAGVPIS PVAGIAMGL+K+G+   ILSDI GD
Sbjct: 422 IRIVSETLESNGSSSMAAVCGGCMSLMDAGVPISAPVAGIAMGLIKEGEKVAILSDILGD 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAG+  GITA+QMD+KIGG++  IM  AL QA+ GRLHIL +M++ L   
Sbjct: 482 EDHLGDMDFKVAGSSDGITALQMDIKIGGVTREIMQKALAQAREGRLHILGKMAETLGAP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++  F PR+  + +  D+IR+VIG GGK IR I E TG  V+I+D G + IAS+S   
Sbjct: 542 RPEMSSFAPRITTIWVKTDKIRDVIGTGGKNIRNITETTGVTVDIEDTGRINIASTSKEA 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A +MIR +TD  E  K+Y G V K+MDFGAFV      DGLVHIS+L T+RV   ++
Sbjct: 602 CDLAIQMIRGLTDEAEEGKLYMGIVKKIMDFGAFVEILPGTDGLVHISELDTKRVKTVTE 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V+ EGD V VK +  D  GK+KLS K 
Sbjct: 662 VLNEGDRVLVKCIGVDKNGKVKLSRKE 688


>gi|152995062|ref|YP_001339897.1| polynucleotide phosphorylase/polyadenylase [Marinomonas sp. MWYL1]
 gi|189037308|sp|A6VU33|PNP_MARMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150835986|gb|ABR69962.1| Polyribonucleotide nucleotidyltransferase [Marinomonas sp. MWYL1]
          Length = 702

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/694 (50%), Positives = 476/694 (68%), Gaps = 3/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T   ++    + LETGRIARQ+ GAVL T G+  VLATVV  +S K GQDFFPL+V+Y
Sbjct: 3   ITTKTFQFGNDTVTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAKAGQDFFPLSVHY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER YAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+  VM  +  
Sbjct: 63  QERAYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTN 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGSL-DLFVSGT 181
               + +M+A SAAL +SG+PF GP+  A+V + +   YVLNP   +  GSL D+ V+GT
Sbjct: 123 LDADIAAMLATSAALTISGIPFNGPIGAARVGFNDESGYVLNPSYSDLDGSLLDMVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DAVLMVE EA +L+ED +L A+++ H E +  I AI++ A  CAK     +++  +  L
Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLYAHKEMQAAISAITEFAAECAKPRWDWEAEAANVSL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + +       +  +  I EK  R  Q+  ++   V+   +E   + E ++   F  ++ 
Sbjct: 243 ADALQSGYAAQIEEAYGISEKMARYAQLGVVRDAAVAALVTEEGEFTEADVTGAFSKLEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  ++D K R+DGRD++TVR I+ +VGLL +THGS+LF RG+TQAI   TLGT  D 
Sbjct: 303 RIVRRRVIDGKPRIDGRDNKTVRPINVEVGLLSKTHGSALFTRGETQAIATCTLGTSRDS 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D L+G  ++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP   +FP
Sbjct: 363 QMTDGLTGESKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEDEFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGL+K+ D F +L+DI 
Sbjct: 423 YTIRVVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLIKEDDGFAVLTDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI+E IM +AL QA   R HIL EM+KV+ 
Sbjct: 483 GDEDHLGDMDFKVAGTAEGITALQMDIKIEGINEEIMDIALSQALEARTHILREMAKVIG 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +R ++    P +  + I P++IR+VIG GG  IR I EQTGA +++DDDGTV+I ++  
Sbjct: 543 YARPEVSPNAPSMATIKIDPEKIRDVIGKGGATIRSITEQTGASIDLDDDGTVRIYAADK 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  +AA   I  IT   EV+K+YKG+VV++ +FGAFV+    +DGLVHISQ++ ER+   
Sbjct: 603 ASSDAALLKIHEITAEAEVDKLYKGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIRAV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +D + EG  V VK+LD D RG+IKLSMK V +  
Sbjct: 663 TDFLSEGQEVIVKVLDVDARGRIKLSMKDVTEEE 696


>gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 701

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYTRLGELKDQVVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|71276358|ref|ZP_00652635.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Dixon]
 gi|71162820|gb|EAO12545.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Dixon]
          Length = 700

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/694 (51%), Positives = 476/694 (68%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 63  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           +AVLMVE EA  LSE+V+L A+IFGH E + VI+ I  L      +P   +       L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKNDALV 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
             + ++I   L  +  I EK  R   I  +K  ++   +   E   WN  E++  F +++
Sbjct: 243 IALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV TLGT  D
Sbjct: 303 YRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  R G   RREIGHGRLARR +  V+P   +F
Sbjct: 363 GQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM K L
Sbjct: 483 LGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDKAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDGT+ IAS +
Sbjct: 543 AAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV +
Sbjct: 603 NAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVER 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 663 VGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 696


>gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           Cit 7]
          Length = 701

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 478/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +     E +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +++L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLNTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|81636811|sp|Q9CLU1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 714

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/694 (48%), Positives = 474/694 (68%), Gaps = 5/694 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q++  V+  +
Sbjct: 61  NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            +  P +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VI+AI +      K      + + +  
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           L E++  + +  L  +  I EK  R +QID +K  +++  ++E       +EG+IV +F 
Sbjct: 241 LIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFT 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +++++VR+ ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT
Sbjct: 301 ALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P  
Sbjct: 361 ERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTL 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A+FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++L
Sbjct: 421 AEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  RLHIL  M 
Sbjct: 481 SDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVME 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R  + +F PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA
Sbjct: 541 QAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +      +     I  IT   E   +YKG+V ++ DFGAFV   G ++GLVHISQ++ ER
Sbjct: 601 AVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K SD +  G  V VK+++ D +G+I+L+MK V
Sbjct: 661 VEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEV 694


>gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           succinogenes 130Z]
 gi|187470960|sp|A6VR10|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           succinogenes 130Z]
          Length = 707

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/691 (48%), Positives = 483/691 (69%), Gaps = 2/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  +VV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQER+YA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE Q+I  V+  +
Sbjct: 61  DYQERSYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A+V +IN Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALALSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI +L K   K      + +  + 
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKEAGKPRWDWVAPEPDTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  L  +  I EK VR +QID +K  +++  ++E+   +EG+IV +F  ++
Sbjct: 241 LINQVKVIAESRLGDAYRITEKQVRYEQIDAIKADVIAQITAENEEVSEGKIVDIFTALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +++VR  ++  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ VVTLGT  D
Sbjct: 301 SQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G +++ F+ HYNF P + GE  R+G+P RREIGHGRLA+R +  V+P  ++F
Sbjct: 361 AQILDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAGIAMGLVK+ D F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEEDKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R ++ E+ PR+  M I P +I++VIG GG  IR + E+TG  ++IDDDGTVKIA+  
Sbjct: 541 AAPRAEISEYAPRIYTMKIDPKKIKDVIGKGGATIRTLTEETGTSIDIDDDGTVKIAAID 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++     I  IT   E   +Y G+V ++ DFGAFV   G ++GLVHISQ++ ERV K
Sbjct: 601 GNAVKEVMARIEEITAEVEAGAVYTGKVTRLADFGAFVAILGNKEGLVHISQIAEERVEK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            SD ++ G  V VK+++ D +G+I+L+MK +
Sbjct: 661 VSDYLQVGQDVQVKVVEIDRQGRIRLTMKDI 691


>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
 gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
          Length = 705

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/701 (44%), Positives = 458/701 (65%), Gaps = 12/701 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            I+ AG  +K ETG+ A+Q++G+V+A YG+T VL T       ++G D+FPL VNY+ER 
Sbjct: 6   TIDVAGGKMKFETGKYAKQANGSVVARYGDTTVLVTATMS-EPREGIDYFPLMVNYEERV 64

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA+GKIPG   RRE RP +   L +R+IDR +RPLF + ++++ Q+I  V+  D +  P 
Sbjct: 65  YAIGKIPGSITRREGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPD 124

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           ++++  AS AL LS +PF+GP+ G +V  ++G+ V+NP  +E + S LDL V+GT+DAVL
Sbjct: 125 ILALNGASVALTLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLDLTVAGTRDAVL 184

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  AN++SEDV+LDAI   H E K ++    ++ +   K+       +   +L+EE+ 
Sbjct: 185 MVEAGANEVSEDVMLDAIELAHQEIKRLVLLQEEIGEEAGKKKFEFTKDEITPELDEEIR 244

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---------EHSSWNEGEIVSVFE 296
           + I  D+  +  IPEK  R  ++D++K+  + YF           E  +     +    E
Sbjct: 245 KYISSDMENALRIPEKLERNAKVDEIKENTLQYFEDMFENNGLDNEEKNKQLKMVERTIE 304

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  + VR +++++ +R DGR  + +R I  +VG L R HGS +F RG TQA+ VVTLG 
Sbjct: 305 KVMKEKVRKMIIEEGIRPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALSVVTLGA 364

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +  L   +   +M HYNF P + GE S + +P RREIGHG L  RA+ PV+P  
Sbjct: 365 TSDEQILFGLGEEETKRYMHHYNFPPYSVGETSPLRSPGRREIGHGALGERALQPVIPDQ 424

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSE+ ES+GS+S A++CGS+LALMDAGVPI +PVAGIAMGL+K+ +  +IL
Sbjct: 425 EEFPYTIRVVSEVLESNGSTSQASICGSTLALMDAGVPIKEPVAGIAMGLLKEDEKVVIL 484

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED  G MDFKVAGT +GITA+QMD+KI GIS+ I+  AL++A+ GRL+IL++M 
Sbjct: 485 SDIQGLEDFYGDMDFKVAGTRNGITALQMDIKIHGISKEILKKALKRAREGRLYILDKML 544

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +V+ + R +L  + P +  M + PD+IR++IG GGK+I  I+++TG +++IDDDG+V I 
Sbjct: 545 QVIDKPRPELSPYAPLMITMKVSPDKIRHIIGPGGKIINKIIDETGVEIDIDDDGSVYIL 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +        A+E+I  +T   EV  IY+G+V K+ +FGAFV     R+GLVHIS+L+   
Sbjct: 605 AQDQESGNRAKEIINKLTKEVEVGDIYEGRVKKITNFGAFVEILPGREGLVHISELADHH 664

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V K  D+VK GD + VK+++ D+ G+I LS K   +   K 
Sbjct: 665 VKKVEDIVKIGDRIPVKVIEIDELGRINLSRKRALKEQKKE 705


>gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato K40]
 gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 701

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/693 (49%), Positives = 478/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S + GE+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSAGEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG+ V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGEEVEVLVLDVDNRGRIKLSIKDV 693


>gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
           DSM 2380]
 gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 699

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/687 (47%), Positives = 468/687 (68%), Gaps = 3/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VE ++ G+ L LETG++ARQ+DGAV+ ++G T VL T V  + +++GQ FFPLTVNYQ
Sbjct: 4   QKVECQFNGQTLTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPG + RRE   TE E L+ R+IDR +RPLF K Y  ETQ++  V+  D ++
Sbjct: 64  EKFYAGGKIPGSFFRRERGATERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
            P  ++MV ASAA+ +S +PF+GPV   +V  + G  + NP +++  +  +D+ VSG++D
Sbjct: 124 DPDTLAMVGASAAIAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMDIIVSGSRD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A++MVE E   +SE  +LDA+ F H   +P+I+   +L K+  KE       +    + E
Sbjct: 184 AIIMVEGETRFISEQEMLDALFFAHEAIQPLIDVQLELVKIAGKEKREFSVPEIDPAVVE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           +++++ +  L  +  I  K  R   + ++K +++   +++     E +I   F ++Q ++
Sbjct: 244 KVAELAETRLSEAVKIRTKQDRYAAVAEIKTEILETLAADFEDQ-EDDISEAFGNLQKRL 302

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   KVR+DGRD  T+R I+ ++GLL R HGS+LF RG+TQA+V   LGT +DEQ 
Sbjct: 303 VRQMVARDKVRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDEQR 362

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D++   +   FM+HYNF P   GE S    P RREIGHG LA R+I  VLP    FPYT
Sbjct: 363 MDNVQSMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHDDFPYT 422

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           LR+VS+I ES+GSSSMA+VCG+SLALMDAGVP+S+ VAGIAMGL+K+GDD ++LSDI GD
Sbjct: 423 LRVVSDILESNGSSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGDDIVVLSDILGD 482

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA+QMD+KI G+S+ IM  AL+QA+ GRLHIL++M++ ++  
Sbjct: 483 EDHLGDMDFKVTGTREGITALQMDIKIKGVSKEIMQQALEQAREGRLHILDKMAEAITAP 542

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L  + PR+  + + PDQ+R VIG GGK +RGI+E TG  ++I+DDG + IAS+    
Sbjct: 543 RSDLSPYAPRITTIQVKPDQVRTVIGPGGKNVRGIIEATGCAIDIEDDGRINIASADGDA 602

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +AA +MIR++T    V K+Y   V K+M+FGAFV      +GLVHIS+L+ ERV K +D
Sbjct: 603 CKAAIKMIRNLTQEAVVGKLYMATVKKIMEFGAFVEIFPGTEGLVHISELAKERVKKVTD 662

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +++EGD V VK LD D +GKIKLS K 
Sbjct: 663 ILQEGDQVLVKCLDIDRQGKIKLSRKE 689


>gi|15616978|ref|NP_240191.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219681731|ref|YP_002468117.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|219682286|ref|YP_002468670.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471431|ref|ZP_05635430.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|11386962|sp|P57454|PNP_BUCAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782710|sp|B8D9F8|PNP_BUCA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782711|sp|B8D7R0|PNP_BUCAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25311798|pir||E84973 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10039043|dbj|BAB13077.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
 gi|219622019|gb|ACL30175.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624574|gb|ACL30729.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|311086110|gb|ADP66192.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086683|gb|ADP66764.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311087269|gb|ADP67349.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 707

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/693 (50%), Positives = 493/693 (71%), Gaps = 2/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG IARQ++ AV+A+  ET V  TVV  + +  GQ FFPLT
Sbjct: 1   MLNPIVRKFQYGQHTITLETGVIARQANAAVMASMDETAVFVTVVGQKKIHTGQKFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPGG+ RRE RP+ENEIL +R+IDR +RPLF K + NE Q+I  V+  
Sbjct: 61  VNYQERTYAAGRIPGGFFRREGRPSENEILTARLIDRPLRPLFPKKFLNEIQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P ++S++ ASAAL LSG+PF GPV  A+V YIN QY+LNP  D+ +  SLDL VS
Sbjct: 121 NPQINPDIISIIGASAALSLSGIPFYGPVGAARVGYINNQYILNPISDDMKNSSLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ+A+LMVE E+  LSE+ +L AIIFGH + + VI  I  L+   +K P VI   + +K
Sbjct: 181 GTQNAILMVEAESKILSEEKILGAIIFGHQQQQVVINNIRSLSNEASKLPWVISYPETNK 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE ++    ++++  +  I  K  R ++++ +K+ ++  F  E+S+ +  EI  +F+ I
Sbjct: 241 TLELKIINSFEKNISDAYVIFNKQDRIEKLNSIKENIIKLFLDENSNIDTLEIEDIFQKI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + KVVR  +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQ++V VTLGT  
Sbjct: 301 EKKVVRKRILSNQTRIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLGTSR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P + GE+  +G+P RREIGHGRLA+R++  V+P    
Sbjct: 361 DAQNLDELLGDRIDNFLFHYNFPPYSVGEIGMVGSPKRREIGHGRLAKRSLLAVMPTLEN 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGI+MGLVK+G+  ++LSD
Sbjct: 421 FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGNQHVLLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ GITA+QMDMKI GI+  I+  AL +A+  RLHILN M++ 
Sbjct: 481 ILGDEDHLGDMDFKVAGTEEGITALQMDMKIEGITNEIIHSALNEARLARLHILNVMNQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+ESR ++ EF PR+ I+ I P++I++VIG GG VIR + E+TG  + I+DDGTVKI+S+
Sbjct: 541 LNESRSEISEFAPRIHIIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVKISST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I+ IT   EV +IY G+V +++DFGAFV     ++GLVHISQ+S +RV 
Sbjct: 601 VKEKAKNAIRRIKEITAEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQISDKRVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K S+ +K    + VK+L+ D +G+++LS+K +D
Sbjct: 661 KVSNHLKIDQIISVKVLEIDRQGRLRLSIKEID 693


>gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
 gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
          Length = 698

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/691 (47%), Positives = 456/691 (65%), Gaps = 5/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  VE+   GR L LETGR+A+Q++ AV   YG+TVVL TV      KD  DFFPLTVNY
Sbjct: 1   MQRVEMLLGGRTLVLETGRLAKQANAAVTVRYGDTVVLCTVTASAEPKD-LDFFPLTVNY 59

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E  IL SR+ DR IRPLF + ++N+ QV   VM  D  
Sbjct: 60  EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQN 119

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            +P + +M+  SAAL +S +PF GP+ G  V  +NGQ+++NP ++++ +  + + V+GT+
Sbjct: 120 CTPEIAAMIGTSAALSISDVPFNGPIGGVNVGRVNGQFIINPTVEQEAETEIFVTVAGTK 179

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA++MVE E N+++EDV+L+AI+FGH+E K ++  I +L     K  + +      +++ 
Sbjct: 180 DAIMMVEAEGNEVAEDVMLEAIMFGHDEIKKIVAMIEELQAAAGKPKMEVKLHAVNAEVN 239

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFEDIQ 299
             +     + L  +  IPEK+ R   ID +    V++F   ++   E   ++  V  DI 
Sbjct: 240 AAVRAFASDKLVEAIRIPEKHARQDAIDAVNGDTVAHFEEVYAETPELLADVKEVLYDIV 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++   KVR DGR  E +R I   V LL RTHGS LF RG TQA+ + TLG   D
Sbjct: 300 KEEVRRLITHDKVRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGALGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +S  +   FM HYNF P + GE   +  P RREIGHG L  RA+  V+P   +F
Sbjct: 360 VQILDGISPEETKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIPSETEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+KDGD F ILSDI
Sbjct: 420 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDHFSILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI GI   I+  AL+QA+ GR+HIL +M+ V+
Sbjct: 480 QGMEDHLGDMDFKVAGTAQGVTAIQMDIKINGIDRAILSQALEQARIGRMHILGKMTAVM 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+SR  L ++ P++  + I PD+IR+VIG GGK+I  I+E+TG K++I+ DG V IASS+
Sbjct: 540 SQSRSSLSQYAPKILTLRINPDKIRDVIGSGGKIINKIIEETGVKIDIEQDGMVFIASSN 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+ +I  I     + ++Y G V ++  FGAFV     +DGLVHISQLSTERVAK
Sbjct: 600 EEMNQKAKAIIEGIVKEVVIGEVYLGTVKRIEKFGAFVEILPNKDGLVHISQLSTERVAK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK+ + D +G+I LS K V
Sbjct: 660 VEDVVAIGDQITVKVTEIDQQGRINLSRKAV 690


>gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
           Re1]
 gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
           Re1]
          Length = 700

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/690 (45%), Positives = 455/690 (65%), Gaps = 3/690 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            + E  GR L +ETG++A+Q++G+V+  Y +TV+L T    +  ++G DF PLT++Y+E+
Sbjct: 4   FKTEIGGRKLIIETGKVAQQANGSVMIRYEDTVLLVTATASKKPREGVDFLPLTIDYEEK 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE +P+E  IL +R+IDR +RPLF K ++N+ QVI  V+  D +++P
Sbjct: 64  LYAVGKIPGGFIKREGKPSEKAILSARLIDRPLRPLFPKDFRNDVQVIATVLSVDQDNTP 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +V++  AS AL +S +PFEGPV    V  I+G+YV+NP + E ++  L L V+GT++AV
Sbjct: 124 DIVAINGASCALCISDIPFEGPVGAVSVGLIDGKYVINPTVSEAEKSRLRLVVAGTKEAV 183

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEM 244
           LMVE  A+++SE+ +L AI++GH E K +I    ++     K  + I +++   +LE+ +
Sbjct: 184 LMVEAGADEVSENEMLSAILYGHEEIKKIIAFQEEIINEIGKTKMEITAEEIDDELEKSV 243

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            +   ED+  +  I +K  R   ID + +  + +F   +    E +I  V  DI  + VR
Sbjct: 244 REFATEDILKAIRIYDKQEREAYIDKINEDTLLHFQDIYPD-TEKQITDVLYDILKEEVR 302

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  + +R DGR    +R IS +VG+L RTHGS LF RG TQ + V TLG   D Q +D
Sbjct: 303 KMISYEGIRPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILD 362

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ P++P    FPYT+R
Sbjct: 363 GLGIEESKRYMHHYNFPPYSTGETKVIRGPGRREIGHGALAERALEPMIPSEEDFPYTIR 422

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+  S+GSSSMA+VCGS+LALMDAGVPI  PV+G+AMGL+K GD   IL+DI G ED
Sbjct: 423 LVSEVLSSNGSSSMASVCGSTLALMDAGVPIKAPVSGVAMGLIKQGDKVTILTDIQGMED 482

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT +GITA+QMD+KI GI E+I+  ALQQA+ GRL I+++M  V+ E R 
Sbjct: 483 FLGDMDFKVAGTKNGITAIQMDIKIKGIDEDILKSALQQAREGRLFIMDKMLSVIPEPRK 542

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + PR+  + + PD+IR++IG GGK I  I+ +T  K++I+DDG V I++   +   
Sbjct: 543 ELSAYAPRIFTITVDPDKIRDIIGPGGKTINKIIAETNTKIDIEDDGKVYISAPEESAGI 602

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E+I  IT   EV +IY G++++  +FGAF      ++GL+HIS+LS ERV +  DVV
Sbjct: 603 KAMEIIDKITQDVEVGRIYMGKIMRTTNFGAFAEILPGKEGLIHISKLSKERVKRVEDVV 662

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K GD + VK+ D D +G+I LS K     T
Sbjct: 663 KVGDEILVKVTDIDKQGRINLSHKDALNET 692


>gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           italicus Ab9]
 gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           italicus Ab9]
          Length = 700

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/698 (44%), Positives = 465/698 (66%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF   Y+N+ Q+I  ++  D
Sbjct: 61  EYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +  P +V+M+ +S AL +S +PF GP     V  ++GQ+V+NP  D+ + SL  L VSG
Sbjct: 121 PDVQPEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DA++MVE  A ++ E+ +L+AI++ H   K ++E I ++ +        +   +   +
Sbjct: 181 TKDAIVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVEEVGVPKSEVILHEIDKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     + +  +   PEK  R   +D ++++++ YF  E+   N  +I  V  +I 
Sbjct: 241 LEEKVRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEEYPD-NLADIDEVLYNIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R ++ ++K+R+DGR  + +R I  +VG+L RTHGS++F RG TQ + V TLG   D
Sbjct: 300 KEQMRKMITEEKIRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D +   +   +M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 IQILDGIGDEEAKRYMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAG+AMGL+K+GD   +L+DI
Sbjct: 420 PYTIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT+ GITA+QMD+KI GI + I+ MAL++A++GRL+IL++M +V+
Sbjct: 480 QGIEDFLGDMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + PRV  M + P++IR++IG  GK I  I+ +TG K++I++DG + I +S 
Sbjct: 540 KEPRKELSIYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVKIDIEEDGRLYITASD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L   E A++MI +IT    V +IY G+V+++  FGAFV     ++GLVHIS+LS +RV K
Sbjct: 600 LKSGERAKQMIEAITKDITVGEIYLGKVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVVK GD + VK+ D D +G+I LS K    +  + 
Sbjct: 660 VEDVVKVGDDILVKVTDIDKQGRISLSRKDALPDEEEE 697


>gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
 gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
          Length = 747

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/697 (47%), Positives = 478/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQ+ GAVL    +TVVLATVV  +  K GQDFFPLT
Sbjct: 3   MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E L SR+IDR IRPLF + + N+  V+I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SGLPF GP+  A+V YING+YVLNP     + S +DL V+
Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA QL E+V+L A++FGH + K  I+AI  L +   K      +     
Sbjct: 183 GTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++++ +  LR +     K VR          + +  + +  +++  ++  +  DI
Sbjct: 243 ALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTEQGVAFDGVKVEGMLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A +VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT  
Sbjct: 303 EAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + F+ HYN  P ATGEV RMG+  RREIGHGRLA+RA+   LP   +
Sbjct: 363 DAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+K+ + F +L+D
Sbjct: 423 FPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E++ ++  F P++  M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ IA++
Sbjct: 543 MGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ EAA+  I  IT   E+ K+Y+G +VK+++FGA V+    +DGL+HISQ++ ERV 
Sbjct: 603 DGAKAEAAKLRIEQITAEVEIGKVYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           K +D ++EG  V VK+L+ DD+G++KLSMK + +   
Sbjct: 663 KVTDYLQEGQVVKVKVLETDDKGRVKLSMKALTERPA 699


>gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 698

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/696 (44%), Positives = 461/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I ++    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R
Sbjct: 603 AVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GD + VK+ + D +G++  S + +++
Sbjct: 663 IEKVEDVLKIGDKIEVKITEIDKQGRVNASHRALEE 698


>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 698

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/696 (45%), Positives = 462/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I ++    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R
Sbjct: 603 AVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 663 IEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TW20]
          Length = 698

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/696 (44%), Positives = 462/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DA+ MVE  A++++E  +L+AI FGH E + +++   ++           I ++    L
Sbjct: 183 KDAINMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R
Sbjct: 603 AVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 663 IEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus N315]
 gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           04-02981]
 gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O11]
 gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O46]
 gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 698

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/696 (45%), Positives = 462/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I ++    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R
Sbjct: 603 AVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 663 IEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 698

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/696 (45%), Positives = 462/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I ++    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERIKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R
Sbjct: 603 AVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 663 IEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
 gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
          Length = 686

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/669 (49%), Positives = 459/669 (68%), Gaps = 2/669 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQ FFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E L SR+IDR IRPLF   + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE  + SLDL V+GT  AVLMVE EA+ LSED +L
Sbjct: 122 IPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVLMVESEADVLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH + + VIE I+ L     K      +   ++ L   ++++ +  L  +  I E
Sbjct: 182 GAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVAELAESRLGDAYHITE 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K  +V    ++  S +  EI  +   ++  VVR+ +L  + R+DGR+ +
Sbjct: 242 KQERYAQVDAIKSSVVEALLAQDESLDASEIQDILGSVEKNVVRSRVLRGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F+ HYNF
Sbjct: 302 MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  ++P+   FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+ D+F++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +S  R  + +F PR+  + I P
Sbjct: 482 TALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISQFAPRIHTIRINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 661

Query: 681 GKIKLSMKV 689
           G+++LS+K 
Sbjct: 662 GRVRLSIKE 670


>gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
 gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
          Length = 702

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/694 (50%), Positives = 480/694 (69%), Gaps = 3/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T   E+  + + LETGRIARQ+ GAVL T G+  VLATVV  ++ K GQDFFPL+V+Y
Sbjct: 3   ITTKTFEFGNQTVTLETGRIARQATGAVLCTLGDAQVLATVVGAKTAKPGQDFFPLSVHY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+  VM  + +
Sbjct: 63  QERTYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGT 181
               + +M+A SAAL +SG+PF GP+  A+V + + + Y+LNP   E  GSL D+ V+GT
Sbjct: 123 LDADIPAMLATSAALAISGIPFNGPIGAARVGFNDEEGYLLNPSNSELDGSLLDMVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DAVLMVE EA +L+ED +L A+++ H E +  I AI++      K      ++   + L
Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLYAHKEMQTAITAINEFVSESGKPRWEWTAEAAKEGL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + +       +  +  I EK  R  ++ ++++  V+   SE   ++E ++   F  ++ 
Sbjct: 243 TDAVQLGFATQIEEAYGISEKMARYTKLGEIREAAVAALVSEEGEYDEADVTGAFAKLEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            +VR  ++D + R+DGRD++TVR I+ +VGLL++THGSSLF RG+TQAI   TLGT  D 
Sbjct: 303 NIVRRRVIDGQPRIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRDA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D L+G  ++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP   +FP
Sbjct: 363 QISDGLAGENKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEDEFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGLVK+ D F +L+DI 
Sbjct: 423 YTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM +AL QA   R +IL EM+ V+ 
Sbjct: 483 GDEDHLGDMDFKVAGTEEGITALQMDIKIEGINEEIMDIALTQAMDARKYILREMATVIG 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +R ++    P +  + I P++IR+VIG GG  IR I E+TGA +++DDDGTV+I ++  
Sbjct: 543 YARPEVSPNAPSMATVKIDPEKIRDVIGKGGATIRSITEETGASIDLDDDGTVRIYAADK 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  +AA   I  IT   E++K+Y+G+VV++ +FGAFV+    +DGLVHISQ++ ER+   
Sbjct: 603 ASSDAALLKIHEITAEAEIDKLYQGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIRAV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           SDV+ EG  V VK+LD D RG+IKLSMK V +  
Sbjct: 663 SDVLAEGQDVIVKVLDVDARGRIKLSMKEVTEEE 696


>gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 711

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/700 (48%), Positives = 485/700 (69%), Gaps = 3/700 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            +    P +V+M+  SAAL +SG+PF GP+  A+V +INGQ VLNP   E DQ  LDL V
Sbjct: 121 VNPNVQPDIVTMIGTSAALAISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ LSE+ +L A+++GH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 AGTEGAVLMVESEADILSEEEMLAAVVYGHDQQQVVINAINEFAAEVATPSWDWVAPQEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L+E+++Q+ +  L  +  I EK  R +++  +K  +++   +E  S +  +I  +   
Sbjct: 241 TALKEKIAQLAEVRLTEAYQIIEKMARYEKVAAIKADVIAAILAEDDSQDVMKIKKLLGA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR  ++  + R+DGR+ + +R +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKQVVRGRIIAGEKRIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDYFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ ++F++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEDENFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++ +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRMLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I  IT   EV KIY G+V ++ DFGAFV     +DGLVHISQ++ +R+
Sbjct: 601 TDGDQAQEAIRRILQITAEVEVGKIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K SDV+ EG  V VK+L+ D +G+++LSMK   +   + 
Sbjct: 661 EKVSDVLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEE 700


>gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           uraniireducens Rf4]
 gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 696

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/687 (47%), Positives = 468/687 (68%), Gaps = 3/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V++E+ GR + +ETG++A+Q+ GAV+ + G+T+VL T V  ++ K+GQDFFPLTVNYQ
Sbjct: 3   TKVQVEFGGRTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTVNYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE+RP++NE L  R+IDR IRPLF + + N+TQ++  V+  D ++
Sbjct: 63  EKAYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P ++SMV ASAALM+S +PF+GP+ G +V  ++G+++ NP  DE +   +++ V+ ++D
Sbjct: 123 DPGILSMVGASAALMVSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSDIEIVVAASKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           AV+MVE  A ++SE+ +L+AI FGH   +P++ A  +L          +       +L+ 
Sbjct: 183 AVIMVEGSAAEVSEEDMLEAIFFGHAAIQPLLAAQEELCSKAGVAKREVPPPAVNEELKA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +  +    ++ +  I  K  R   ID +  + ++  ++E    +  +I +   D + ++
Sbjct: 243 NVKDIAYARMKEAVRIKSKVERHNSIDAISAETLAALATEFEGCD-KQIKAFLGDFEYEL 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L    R+DGRD++T+R I+ +V LL R HGS+LF RG+TQ++V  TLGT  DEQ 
Sbjct: 302 VREHILKDGERIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQR 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DSL G  +  F++HYNF P + GE S    P RREIGHG LA RA+  VLP+   FPYT
Sbjct: 362 IDSLFGESKKRFLLHYNFPPFSVGETSFRLGPGRREIGHGMLAERALARVLPKHDDFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVS+I ES+GSSSMA+VCG S+++MDAG+PI  PVAGIAMGL+K+G+DF ILSDI GD
Sbjct: 422 IRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGEDFAILSDILGD 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM +AL+QA  GRLHIL  M+  +  S
Sbjct: 482 EDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMGIALKQALEGRLHILGRMADTIKTS 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  L  + PR+  + +  D+IR+VIG GGK IRGI E TG  ++IDD G + IAS+  A 
Sbjct: 542 KSDLSTYAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKINIASTDKAA 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A +MIR +T   E  K+Y G V KVM+FGAFV      DGLVHIS+L TERV   +D
Sbjct: 602 CDLAIKMIRDLTAEAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISELDTERVKNVTD 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           ++KEGD V VK +  D +GKIKLS K 
Sbjct: 662 ILKEGDKVLVKCIGIDKQGKIKLSRKE 688


>gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
 gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
          Length = 684

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/674 (49%), Positives = 467/674 (69%), Gaps = 2/674 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA GKIPGG+ RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH + + VI+ I+ L K   K       +  ++ L   ++ + +  L  +  I +
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITD 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K + ++   +E  + +  E+  +   I+  VVR+ +L  + R+DGR+ +
Sbjct: 242 KQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G + + F+ HYNF
Sbjct: 302 MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 661

Query: 681 GKIKLSMKVVDQNT 694
           G+++LS+K   + T
Sbjct: 662 GRVRLSIKEATEQT 675


>gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha153]
          Length = 706

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           961-5945]
 gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           G2136]
          Length = 706

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/702 (48%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D +K G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
 gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
          Length = 689

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/685 (44%), Positives = 452/685 (65%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRMLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P
Sbjct: 63  MYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP   + ++  L++ V+GT+DA+
Sbjct: 123 AICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           LMVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD  +++ + +
Sbjct: 183 LMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D
Sbjct: 302 HMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR
Sbjct: 362 GLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I PD+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G++ LS K 
Sbjct: 662 SVGDEIMVKVIEIDKQGRVNLSRKD 686


>gi|71278713|ref|YP_268932.1| polynucleotide phosphorylase/polyadenylase [Colwellia
           psychrerythraea 34H]
 gi|123774912|sp|Q482T5|PNP_COLP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71144453|gb|AAZ24926.1| polyribonucleotide nucleotidyltransferase [Colwellia
           psychrerythraea 34H]
          Length = 705

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/694 (48%), Positives = 473/694 (68%), Gaps = 2/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +  T + +     + LETG IARQ+  AV+A+  +T VL +VV  +  K GQDFFPLT
Sbjct: 1   MLNPITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER YA GKIPG + +RE RP+E E LI+R+IDR IRPLF + + NE QVII V+  
Sbjct: 61  VNYQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + E +P ++S++  SAAL +SGLPF GPV  A+V Y +GQY+LNP   E     LDL VS
Sbjct: 121 NPEIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT  AVLMVE EA+ LSE+V+L A+++GH + +  + AI +             +    +
Sbjct: 181 GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEFKAEVNTPSWDWVAPVKNA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L  +++++ +  +  +  I EK VR ++I +++  ++    +E++  +  E   +F D+
Sbjct: 241 ELLAKIAELSEAQVNEAYQITEKAVRYEKIKEIRSSVLEALLAENADVDVQEAKDLFHDL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  + D   R+DGRD E++R +    G+L RTHGS++F RG+TQA+V  TLGT+ 
Sbjct: 301 EKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQRLDTLMGDKTDPFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSLEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+G+ F++LSD
Sbjct: 421 FPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QAK  R HIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSVMDEA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R  + EF PR+  M +  D+IR++IG GG  IR + E+TG  + I+DDGTVKIA++
Sbjct: 541 IGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIEDDGTVKIAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  + E A   I+++T   EV  +Y G+VV+++DFGAFV+    +DGLVHISQ+S ERV 
Sbjct: 601 SGEQAEDAINRIKALTAEIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             S+V+ EG  V VK+L+ D +G+++LS+K   +
Sbjct: 661 NVSEVLTEGQEVKVKVLEVDRQGRVRLSIKEAME 694


>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
 gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
          Length = 707

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 478/702 (68%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV   SD ++ G  V VK L+ DDRG+++LS+K + +   + 
Sbjct: 661 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAPARE 702


>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
 gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
          Length = 689

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/685 (44%), Positives = 452/685 (65%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P
Sbjct: 63  MYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP   + ++  L++ V+GT+DA+
Sbjct: 123 AICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEM 244
           LMVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD   ++ + +
Sbjct: 183 LMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPVEISDAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V+T+    ++Q +D
Sbjct: 302 HMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR
Sbjct: 362 GLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I PD+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G++ LS K 
Sbjct: 662 SVGDEIMVKVIEIDKQGRVNLSRKD 686


>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 699

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/696 (48%), Positives = 476/696 (68%), Gaps = 4/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             VEIE+ G+PL +ETG++ARQ+DGA + TYGET +L TVV  +++++GQDFFPLTVNYQ
Sbjct: 4   QKVEIEFNGQPLTIETGKMARQADGATIVTYGETKILCTVVSAKTMREGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPG + RRE   TE E LI R+IDR +RPLF K Y  ETQ+I  V+  D  +
Sbjct: 64  EKFYASGKIPGSFFRRERGATERETLICRLIDRPMRPLFPKGYLYETQIIPTVISADCVN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P  +S++AASA++ +S +PF GP+ G +V  ++G+++ NP L++ +Q  +++ V+G++D
Sbjct: 124 DPDTLSILAASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDIEIVVAGSKD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEE 242
           A++MVE EA+ +SED +L+A+ FGH   +P+IE  +KLA++   E    I  +  + LEE
Sbjct: 184 AIMMVEGEADLISEDEMLEAVFFGHQAIQPLIEMQTKLAELVGVEKREFIVPETDAALEE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++  + +  +  +  I  K  R   + +++  +    + E    ++ EI ++   I+ +V
Sbjct: 244 KIVSLAQGRVEKAVTIRAKQERYAALKEIRADIQEQLAEEFEGRSD-EISAIMGSIEKRV 302

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +   ++R+DGR    +R IS +VG+L R HGS+LF RG+TQA+V  TLGT  DEQ 
Sbjct: 303 VRQSVTKDQIRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQR 362

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D++ G +   FM+HYNF P   GE S    P RREIGHG LA R+   ++P+   FPYT
Sbjct: 363 MDNIQGMEFKKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSATKIMPEFDDFPYT 422

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEI ES+GSSSMA+VCG+S++LMDAGVP    VAGIAMGL+K+GDD  ILSDI GD
Sbjct: 423 VRIVSEILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAILSDILGD 482

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  G+ A+QMD+KI G++ +IM  AL QAK GRLHIL EM+K +S  
Sbjct: 483 EDHLGDMDFKVTGTKEGVAALQMDIKIDGVTRDIMQRALAQAKEGRLHILGEMAKAISAP 542

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  +  + PR+  + + PDQ+R VIG GGK +RGI+E TG  ++I+DDG + I+SS+   
Sbjct: 543 REDMSPYAPRITTVFVKPDQVRTVIGSGGKTVRGIIEATGCGIDIEDDGRINISSSNGDA 602

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +AA +MI+ +T  PEV K+Y G V K+MDFGAFV      DGLVH+S+L+ ERV K +D
Sbjct: 603 AKAAAQMIKELTQSPEVGKLYNGTVKKIMDFGAFVEIFSGTDGLVHVSELAKERVNKVTD 662

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
           ++ EGD V VK +  D +GKIKLS K  + Q   + 
Sbjct: 663 ILNEGDKVLVKCIGVDRQGKIKLSRKEALGQELPEE 698


>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 698

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/696 (45%), Positives = 461/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I  +    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPVERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R
Sbjct: 603 AVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 663 IEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
 gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
          Length = 706

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 478/702 (68%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV   SD ++ G  V VK L+ DDRG+++LS+K + +   + 
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAPARE 701


>gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           sphaericus C3-41]
 gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus
           sphaericus C3-41]
          Length = 704

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/699 (43%), Positives = 457/699 (65%), Gaps = 4/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAGRPL +E G++A+Q++GAVL  YG+T VL+T    +S K   DFFPLT
Sbjct: 1   MNEKKVYSYEWAGRPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKP-LDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+ER YA GKIPGG+++RE RP+E  IL SR+IDR IRP+F   ++NE QVI  VM +
Sbjct: 60  VNYEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSN 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + +  + +MV +S AL +S +PF+GP+ G QV YI+G++++NP +++  Q ++ L V+
Sbjct: 120 DSDCTSEMAAMVGSSLALAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNQSTIHLSVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G +DA+ MVE  A ++ E+V+L+AI+FGH E K +I    ++     KE   +   +  +
Sbjct: 180 GNKDAINMVEAGALEVPEEVMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKKPVTLFEIDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
            ++ ++    + D+  +    EK+ R + I  +K ++++ +  + +  +   ++ ++ + 
Sbjct: 240 AIQADIKAACETDMHDAIQTAEKHARDEAIQAVKDRIIASYEEQEADDDTMKQVYTILDK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +    VR  + + K+R DGR  + +R +S++ GLLQRTHGS LF RG TQA+ + TLG  
Sbjct: 300 MVKDEVRRQITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P  +
Sbjct: 360 GDVQIIDGLGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDES 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R VSE+ ES+GS+S A++C S+LA+MDAGVP+  PVAGIAMGL+K G+ + IL+
Sbjct: 420 VFPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI G+S NI+  AL QAK GR+HIL  M  
Sbjct: 480 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R QL EF P++ I+ I PD+IR+VIG GGK I  I+E+TG K++ + DGT+ I+S
Sbjct: 540 TLAEPRKQLSEFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++      A+++I  I    +V + Y   V ++  FGAF      +DGL+HIS++  ER 
Sbjct: 600 ANEEMNARAKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERT 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +  DV+K GD + VK+++ D +G++ LS KVV Q   +
Sbjct: 660 KQVEDVLKLGDQLLVKVIEIDKQGRVNLSRKVVLQEEKE 698


>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
 gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
          Length = 689

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/685 (44%), Positives = 451/685 (65%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P
Sbjct: 63  MYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP   + ++  L++ V+GT+DA+
Sbjct: 123 AICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           LMVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD  +++ + +
Sbjct: 183 LMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D
Sbjct: 302 HMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR
Sbjct: 362 GLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I  D+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G++ LS K 
Sbjct: 662 SVGDEIMVKVIEIDKQGRVNLSRKD 686


>gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
          Length = 699

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/697 (44%), Positives = 453/697 (64%), Gaps = 7/697 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V Y++G YV+NP + E +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVSEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++           I  +    L
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPVKQEFIPVERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E++  + +E  L+ +    +K  R + +D LK+++V +F  E    NE    E+ S+  
Sbjct: 243 VEKVKALTEEKGLKDTVLTFDKQQRDENLDALKEEVVEHFIDEEDPDNESLINEVYSILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIADEKIRPDGRKVDEIRPLDSEVGLLPRVHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 TDFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDAPRKELSAYAPKVVTMHIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I+ A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S +R
Sbjct: 603 AVDQEMIDRAKEIIEEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISKDR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           + K  DV+  GDT+ VK+ + D +G++  S K + Q 
Sbjct: 663 INKVEDVLNIGDTIEVKITEIDKQGRVNASHKALTQE 699


>gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
 gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
          Length = 704

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/699 (43%), Positives = 455/699 (65%), Gaps = 4/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAGRPL +E G++A+Q++GA L  YG+T VLAT    +S K   DFFPLT
Sbjct: 1   MNEKKVYSYEWAGRPLVIEVGQLAKQANGAALVRYGDTSVLATATMSKSPKP-LDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+ER YA GKIPGG+++RE RP+E  IL SR+IDR IRP+F   ++NE QVI  VM +
Sbjct: 60  VNYEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSN 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + +  + +MV +S AL +S +PF+GP+ G QV YI+G++++NP +++  + ++ L V+
Sbjct: 120 DPDCTSEMAAMVGSSLALAISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNRSTIHLSVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G +DA+ MVE  A ++ E+++L+AI+FGH E K +I    ++     KE + +   +  +
Sbjct: 180 GNKDAINMVEAGALEVPEEIMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKLPVTLFEIDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFED 297
            ++ ++    + D+  +    EK+ R + I  +K+++++ +   E       ++ ++ + 
Sbjct: 240 AIQADIKAACETDMHDAIQTAEKHARDEAIQAVKERVIASYEEQEADDETMKQVYTILDK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  + VR  + + K+R DGR  + +R +S++ GLLQRTHGS LF RG TQA+ + TLG  
Sbjct: 300 MVKEEVRRQITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P  +
Sbjct: 360 GDVQIIDGLGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDES 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R VSE+ ES+GS+S A++C S+LA+MDAGVP+  PVAGIAMGL+K G+ + IL+
Sbjct: 420 IFPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI G+S NI+  AL QAK GR+HIL  M  
Sbjct: 480 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L E R QL  F P++ I+ I PD+IR+VIG GGK I  I+E+TG K++ + DGT+ I+S
Sbjct: 540 TLPEPRKQLSAFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A    A+++I  I    +V + Y   V ++  FGAF      +DGL+HIS++  ER 
Sbjct: 600 ADEAMNARAKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERT 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +  DV+K GD + VK+++ D +G++ LS KVV Q   +
Sbjct: 660 KQVEDVLKLGDQLLVKVIEIDKQGRVNLSRKVVIQEEKE 698


>gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis FRI909]
          Length = 701

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/698 (45%), Positives = 463/698 (66%), Gaps = 9/698 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP + + +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDFSK 239
           +DAV MVE  A++++E  +L+AI FGH E K ++    ++       K+  V   +D   
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPIKQEFVPVERD-ED 241

Query: 240 LEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVF 295
           L E++ ++ ++  L+ +    +K  R + +D LK+++V +F  E    NE    E+ ++ 
Sbjct: 242 LVEKVKRLTEDKGLKETVLTFDKQQRDENLDVLKEEVVGHFLDEEDPENETLVKEVYAIL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG
Sbjct: 302 NDLIKEEVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L       FM HYNF   + GE   + AP RREIGHG L  RA+  ++P 
Sbjct: 362 ALGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPD 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           T  FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + I
Sbjct: 422 TQDFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M
Sbjct: 482 LTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              + + R +L  + P+V  M+I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I
Sbjct: 542 LHTIEQPREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +   A I  A+E+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S E
Sbjct: 602 GAVDQAMINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQE 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           R+ K  DV+K GDT+ VK+ + D +G++  S KV++Q+
Sbjct: 662 RINKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLEQS 699


>gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 701

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 477/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVILETGRIARQASGAVLVTVDDDVSVLVTVVGAKHADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA   AK       K + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +     + +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ESKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG+ V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGEEVEVLVLDVDNRGRIKLSIKDV 693


>gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           N1568]
          Length = 706

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/702 (48%), Positives = 471/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D +K G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 687

 Score =  797 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/674 (49%), Positives = 465/674 (68%), Gaps = 2/674 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVNYQERTYA GKIPGG+ RRE 
Sbjct: 2   MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  +E + S LDL V+GT+ AVLMVE EA  LSED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPE 260
            A++FGH + + VI+ I+ L K   K       +  ++ L   ++ + +  L  +  I +
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITD 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K + ++   +E  + +  E+  +   I+  VVR+ +L  + R+DGR+ +
Sbjct: 242 KQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G   + F+ HYNF
Sbjct: 302 MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTDSFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVP+   VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI++ IM +AL  AK  RLHIL  M + ++  R  + EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITKEIMQVALNLAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 661

Query: 681 GKIKLSMKVVDQNT 694
           G+++LS+K   + T
Sbjct: 662 GRVRLSIKEATEQT 675


>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
 gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
          Length = 707

 Score =  797 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/702 (47%), Positives = 478/702 (68%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG Y+LNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV   SD ++ G  V VK L+ DDRG+++LS+K + +   + 
Sbjct: 661 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAPARE 702


>gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
 gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
          Length = 704

 Score =  797 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/697 (48%), Positives = 471/697 (67%), Gaps = 4/697 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T   ++ G  + LETGRIARQ+ GAVL T   T VL TVV +++ ++G+DFFPL V
Sbjct: 1   MNPVTKTFQYGGHTVTLETGRIARQATGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+ Y+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF+  + NE QVI  VM  D
Sbjct: 61  HYIEKAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFADGFMNEVQVICTVMSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDED-QGSLDLFVS 179
               P + +M+  SAAL +SG PF GP+  A+V +   + Y+LNP  D+     L++ V+
Sbjct: 121 KHIDPDIPAMIGTSAALAISGCPFNGPIGAARVGFNESEGYILNPTYDQLPNSKLEMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GTQDAVLMVE +A+QL+ED +L A++F H E + VI+A+ +LA    K      +     
Sbjct: 181 GTQDAVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKPSWDWQAPATDE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++  +K DL  +  I +K  R  ++ +++   V+  ++E    +   +   F+ +
Sbjct: 241 ALLSAVTDKVKGDLGEAYRITDKAERYARVGEIRDACVAELATEDGP-SADLVKDYFKKV 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  ++  + R+DGRD+ TVR I+ +V +L + HGS+LF RG+TQAI  VTLG+  
Sbjct: 300 EKALVRNRIIAGEPRIDGRDTRTVRQIACEVDILSKAHGSALFTRGETQAIGAVTLGSTR 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +  VLP   +
Sbjct: 360 DAQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+D
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ V
Sbjct: 480 ILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNAV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L   R    E  P +  + +  D+IR++IG GG +IR I EQ+GA V+I+DDGTV++   
Sbjct: 540 LDAPREVTSENAPSMVTLKVDADKIRDIIGKGGAMIRSITEQSGATVDIEDDGTVRVFGQ 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A  + A  +I  IT   EV  IY G+V +++DFGAFV+    +DGL+HISQ++ ERV 
Sbjct: 600 DQASRDKAVALIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             SD +KEG+ V VK+LD D RG+IKLS+K + ++  
Sbjct: 660 NVSDHLKEGEEVRVKVLDVDQRGRIKLSIKELLEDEA 696


>gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M0579]
 gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240149]
 gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 706

 Score =  797 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 701

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/694 (45%), Positives = 462/694 (66%), Gaps = 7/694 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWA RPL +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPL VN
Sbjct: 4   EKKVFKTEWANRPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLMVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q+I  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+YV+NP +++ +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGEYVINPTVEQKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKL 240
           +DAV MVE  A++++E  +LDAI FGH E K +++   ++      E      K+  +++
Sbjct: 183 RDAVNMVEAGASEITEKEMLDAIFFGHEEIKRLVDFQQEIIDYLQPEKTEFIPKERNAEV 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
           EE+++ + +E  L+ +    +K  R + ID ++ ++V+ F  E +  N+    E+ S+  
Sbjct: 243 EEKVTALTEEKGLKDAIQTFDKKEREENIDAIRDEVVAEFEDEENPDNDEVIAEVNSILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR  + D+KVR DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRQIADEKVRPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 MSEYQLIDGLGTEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D++ IL
Sbjct: 423 KDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT+ GITA+QMD+KI G++  I+  AL+QA+ GRL ILN M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTEKGITAIQMDIKIDGLTREIIEEALEQARVGRLTILNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+VE M I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 ETIDQPRPELSAYAPKVETMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I  ARE+I  IT   EV ++Y  +V ++  +G FV     +D L+HISQ++ +R
Sbjct: 603 AVDQDMINRAREIIEDITREAEVGQVYNAKVRRIEKYGTFVELFPGKDALLHISQIANQR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + K  DV+K GDT+ VK+ + DD+G++  S + +
Sbjct: 663 INKVEDVLKLGDTIEVKVTEIDDKGRVNASHRAL 696


>gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           OX99.30304]
          Length = 706

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
 gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
          Length = 706

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 477/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHAKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV   SD ++ G  V VK L+ DDRG+++LS+K + +   + 
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAPARE 701


>gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240355]
          Length = 706

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 471/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D +K G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           RF122]
 gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           RF122]
          Length = 698

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/696 (45%), Positives = 462/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I ++    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPAERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERIKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S  R
Sbjct: 603 AVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 663 IEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 698


>gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
 gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
          Length = 706

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQTRSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           053442]
 gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           053442]
          Length = 706

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|329896238|ref|ZP_08271416.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328921909|gb|EGG29276.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 746

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/692 (49%), Positives = 470/692 (67%), Gaps = 4/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++ G+ + LETGRIARQ+ GAVL T   T VL TVV  +S K GQDFFPL+V
Sbjct: 1   MNPIVKTFQYGGQTVTLETGRIARQATGAVLVTVENTTVLVTVVAAKSQKPGQDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE++YAVGKIPGG+ +RE RP+E E L SR+IDR IRPLF+  + NE QV+  VM  D
Sbjct: 61  HYQEKSYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFADGFMNEVQVMCTVMAAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQ-GSLDLFVS 179
               P + +M+  SAAL +SG+PF GP+  A+V +   + Y+LNP  +  +   LD+ V+
Sbjct: 121 DHIDPDIPAMIGTSAALAISGVPFNGPIGAARVGFNAQEGYLLNPDYNALKGSDLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EA +L+ED +L A++F H E + VI AI++L     K      +   ++
Sbjct: 181 GTKDAVLMVESEAKELTEDQMLGAVLFAHQEMQTVIAAINELVAEAGKPKWDWQAPAVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L E +      DL  +  I EK  R  ++D+++   V   + E    +  ++  VF+ +
Sbjct: 241 ALVEAVRAQAGADLGAAYRITEKAERYARVDEIRTACVEALAVEDGP-SADDVKDVFKSV 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  +L  + R+DGRD +TVR I+  V LL R HGS+LF RG+TQAI  VTLG+  
Sbjct: 300 EKALVRQRILAGEPRIDGRDGKTVRQIACSVDLLPRVHGSALFTRGETQAIGAVTLGSPR 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +++ FM+HYNF P + GE  R+GA  RREIGHGRLARR +  VLP   +
Sbjct: 360 DAQIIDALEGERKDAFMLHYNFPPYSVGEAGRVGATGRREIGHGRLARRGLAAVLPNQDE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+D
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCVGSLAMMAAGVPLKAPVAGIAMGLVKEGNQFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL+QA   RLHIL +M+ V
Sbjct: 480 ILGDEDHLGDMDFKVAGTAAGVTALQMDIKIEGINEQIMEIALEQALHARLHILGQMNSV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S +R       P +  + +  D+IR++IG GG  IR I E++GA V+IDDDGTVKI   
Sbjct: 540 ISTAREVTSADAPSMVTLKVDSDKIRDIIGKGGVTIRAITEESGATVDIDDDGTVKIFGQ 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           + A  + A EM+  IT   EV ++Y+G V +++DFGAFV     +DGLVHISQ++ +RV 
Sbjct: 600 NQAARDRAVEMVMEITAEAEVGQVYEGTVARIVDFGAFVTILPGKDGLVHISQIANQRVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K +D ++EG TV VK+LD D RG+IKLS+K +
Sbjct: 660 KVTDFLEEGQTVRVKVLDVDQRGRIKLSIKEL 691


>gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M13399]
          Length = 706

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/702 (47%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLVANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
          Length = 752

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/697 (43%), Positives = 450/697 (64%), Gaps = 5/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 E AGRPL +E G++A+Q++G+ L  YG+TV+LAT    +  + G DFFPL V++
Sbjct: 11  KKVFRTELAGRPLIVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDW 70

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA G+IPG + RRE +P+E  IL  R+ DR +RPLF K Y+N+ Q+I+  + +D +
Sbjct: 71  EERLYAAGRIPGSFFRREGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDD 130

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +  ++ AS AL +S +P+ GPV   +V  ++G+ V+NP   + +   LDL V+GT+
Sbjct: 131 CSPEIAGIIGASVALGISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSRLDLTVAGTK 190

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DA+ MVE  A+++ E  +LDAI  GH E K ++E    +   C K        +    + 
Sbjct: 191 DAINMVEAGAHEVPEATILDAIFRGHEEIKKLVEFQEAIIAQCGKPKAEPVLYEPDPAVA 250

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +     E LR +   P+K  R + +D++KK  +     E     E +I  V +D+  +
Sbjct: 251 AAVRTRYTERLRAAINHPDKQAREQAVDEVKKAALEELLPEFPEG-EMDIKHVLDDVLKE 309

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR+ +L++ +R DGR  + +R I  +VGLL R HGS LF RG TQ + V +LG   D Q
Sbjct: 310 IVRSQILEEGIRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQ 369

Query: 362 YVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D+L    +   +M HYNF P +TGEV+ + APSRREIGHG LA RA+ PVLP   +FP
Sbjct: 370 MLDTLGQIEEFKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+  S+GS+SMA+ CGS+LALMDAGVPI  PVAG+AMGL+K+GD F +L+DI 
Sbjct: 430 YTIRLVSEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQ 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI G+   ++  AL+QA+ GRL IL +M +V+ 
Sbjct: 490 GIEDHLGDMDFKVAGTREGVTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKMLEVID 549

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L  + PR+ IM IP ++IR VIG GG+++  I ++ G K++I+DDG V I++ + 
Sbjct: 550 KPRPELSPYAPRIIIMQIPVEKIREVIGPGGRMVNRIADECGVKIDIEDDGKVYISAQTQ 609

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              E A+E I  I    EV  +Y G+V ++M FGAFV     ++GLVH+S+L+ +RV + 
Sbjct: 610 QGGEKAKEWIEQIVADVEVGSVYLGKVTRLMTFGAFVEILPGKEGLVHVSRLAPQRVPRV 669

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696
            D+V+ GDTV VK+++ DD G++ LS K  + +   K
Sbjct: 670 EDMVRPGDTVLVKVVEIDDLGRVNLSRKDALAEQPEK 706


>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
 gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
          Length = 706

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGVAGETIKEAFKIRQKQERSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D +K G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0010_01E20]
          Length = 701

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/692 (49%), Positives = 479/692 (69%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    E ++    + +ET ++A+Q+ G+V+ T G TVVL TVV  ++ + GQDFFPLTV
Sbjct: 1   MNPIYKEFQYGDETVVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ RRE RP+E E L SR+IDR IRPLF K + NE QV+  V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSG 180
            +  P + +M+  SAAL +SG+PF+GP+  A+V YI+G Y+LNP  +   +  L++ V+G
Sbjct: 121 KDQDPDIAAMIGTSAALAISGIPFKGPLGAARVGYIDGNYILNPGYESLKESMLNMTVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+ AVLMVE EA +++ED +L A++FGH E + +I+A+++LA +  KE     +    + 
Sbjct: 181 TESAVLMVESEAKEMTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGKEAWDWRAAAKDES 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+E ++  IK DL  +  I  K  R   +  L++K +   +   + ++  EI   F  ++
Sbjct: 241 LQETVATTIKTDLGEAYRISNKMERQTAVSALRQKAIEQIAGGDAEYSSDEISDTFAKVE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  +L+ + R+DGRD  TVR I  +VG+L + HGS+LF RG+TQA+VV TLGT  D
Sbjct: 301 KDLVRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
              +D+L G+ ++ FM+HYNF P + GE   M  P RREIGHG+LARR +   LP    F
Sbjct: 361 AALIDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSASLPNAEDF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI+ PVAG+AMGLVK+G+ + +L+DI
Sbjct: 421 PYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPITAPVAGVAMGLVKEGNRYAVLTDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGTD G+TA+QMD+KI GI+E IM  AL QA   R+HIL EM+KV+
Sbjct: 481 LGDEDHLGDMDFKVAGTDKGVTALQMDIKIEGITEEIMESALAQAHEARIHILGEMNKVI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SESR +L    P +  M + PD+IR++IG GG  IR IVE+TGA+V+I+DDG+V+I +  
Sbjct: 541 SESRSELSANAPAMVTMNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRIYAED 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            +  +AA   I+ IT   EV +IY+G V +++DFGAFV     +DGL+HISQ++  RV  
Sbjct: 601 ASAKDAAVARIQEITAEAEVGQIYEGTVARIVDFGAFVTILPGKDGLLHISQIAENRVEN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD + EG  V V +LD D RG+IKLS+K ++
Sbjct: 661 VSDYLSEGQDVEVVVLDVDQRGRIKLSIKELE 692


>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
 gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
          Length = 725

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/697 (48%), Positives = 478/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAV+    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKIVKEFQWGQHTVRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + E    + +++A+SAAL +SG+PF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 123 NPEIPADIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QLSEDV+L A+++GH + +  I AI  L +   K       +    
Sbjct: 183 GTERAVLMVESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++    L+ +  + +K  R  ++ ++   + +  +      ++ E+ +V  D+
Sbjct: 243 ALIAKVSEIGLPLLQQAYQLRQKSARSTKLKEIYATVQAQLAEAGVEADKVEVGNVLFDL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +L  + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 303 EAKIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 363 DEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QA+ GR+HIL  M   
Sbjct: 483 ILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQGA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  ERV 
Sbjct: 603 STDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVK 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              D +KEG  V VKL+  D++G+++LS+K      G
Sbjct: 663 DIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEG 699


>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
 gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
          Length = 689

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/685 (44%), Positives = 451/685 (65%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRMLTIETGELAKQASGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF+K  +NE  V+  VM  D +  P
Sbjct: 63  MYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP   + ++  L++ V+GT+DA+
Sbjct: 123 AICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           LMVE  A ++ ED++L+ I+  H E K ++     +     KE  V + KD  +++ + +
Sbjct: 183 LMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPAEISDAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q ++++  ++++F   +   N  ++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D
Sbjct: 302 HMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P    FPY LR
Sbjct: 362 GLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I  D+IR+VIG GGKVIR I+E+TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDSDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E+I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G++ LS K 
Sbjct: 662 SVGDEIMVKVIEIDKQGRVNLSRKD 686


>gi|256821536|ref|YP_003145499.1| polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
           16069]
 gi|256795075|gb|ACV25731.1| Polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
           16069]
          Length = 706

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/699 (48%), Positives = 476/699 (68%), Gaps = 3/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+ GR + +ETGR+ARQ+ GAV+     T     V   + +++GQDFFPLTV
Sbjct: 1   MEYTKKSFEYGGRTVTIETGRVARQATGAVVIDCDGTTAFVAVTGKKEVREGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NY E+TYA GKIPGG+L+RE+RP++ E LI+R+IDR +RPLF   + NE QV+I ++  +
Sbjct: 61  NYTEKTYAAGKIPGGFLKREARPSDEETLIARLIDRPLRPLFPDGFMNEVQVVITIVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            +    VV+M+ ASAAL +SG+PF GPV  AQV Y++G+YVLNP + +  +  LDL V+G
Sbjct: 121 QDVPTEVVAMLGASAALEISGIPFSGPVGAAQVGYLDGEYVLNPSVTQLKESKLDLMVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+ AVLMVE EAN+L E+V+L A++FGH E +  I+AI +LA   AK      + + +  
Sbjct: 181 TESAVLMVESEANELPENVMLGAVMFGHQESQVAIKAIKELAAEAAKPKWDWTAPEKNVP 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
           L + +       +  +  I +K  R  +I++L+   V   +  E    +  ++  +F  I
Sbjct: 241 LYDAVKSHSFAAIEDAYQIADKAERYTKINELQSVAVEALAGDEEGQPSADDVKDMFHSI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +VVRT ++  K R+DGRD + VR +  + G+  RTHGS++F RG+TQA+V  TLGT  
Sbjct: 301 EKEVVRTRIISGKPRIDGRDPDMVRALDVRTGVFPRTHGSAIFTRGETQAMVFATLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q  DS+ G  ++ FM+HYNF P   GE   MG+P RREIGHGRLA+R +  ++P  A+
Sbjct: 361 DAQIKDSIMGEAKDHFMLHYNFPPYCVGETGFMGSPKRREIGHGRLAKRGVAAMVPGIAE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+ D+F++LSD
Sbjct: 421 FPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEADNFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM  AL QAK GRLHIL+ M++ 
Sbjct: 481 ILGDEDHLGDMDFKVAGTENGITALQMDIKIEGITQEIMEQALHQAKGGRLHILSVMNQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L + R  + E+ PR+ ++ IP D+I  VIG GG  IR + E+TGA + I+DDGTVK+ASS
Sbjct: 541 LEKPRDDISEYAPRITVIKIPVDKISEVIGKGGSTIRALTEETGATIEINDDGTVKVASS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A   I+ +T   E    ++G+VV++ DFGAFV     RDGLVHISQ++ ERV 
Sbjct: 601 DAEGAAEAVRRIKLMTMPIEAGMEFEGKVVRLADFGAFVEITPGRDGLVHISQIAHERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K +D +KEGD V VK+L+ D + +I+LSMK +     + 
Sbjct: 661 KVTDYLKEGDVVKVKVLEVDRQNRIRLSMKAMIDPPAQE 699


>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           Z2491]
 gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis Z2491]
 gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           WUE 2594]
          Length = 706

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/702 (48%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           K90mix]
 gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           K90mix]
          Length = 695

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/690 (51%), Positives = 476/690 (68%), Gaps = 3/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H    ++    +  ETG IARQ+ GAVL    ETVVL T V  +  + G+DFFPLTVNYQ
Sbjct: 3   HKKSFQYGNHTVTFETGDIARQASGAVLVNMAETVVLVTAVARKEAEPGRDFFPLTVNYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ERTYA GKIPGG+ +RE RP E E L SR+IDR IRPLF + +KNETQ++  VM  + + 
Sbjct: 63  ERTYAAGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P + +++ ASAAL LSG+PF GP+  A+V Y  G+Y+LNP     +   LDL V+GT+ 
Sbjct: 123 DPDIPALLGASAALALSGVPFAGPIGAARVGYRAGEYLLNPTYSALEDSDLDLVVAGTEH 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           AVLMVE EA++LSE+ +L A++FGH + +  I+AI +LA    K      +      LE+
Sbjct: 183 AVLMVESEASELSEEAMLGAVMFGHEQMQAAIQAIKELAAEAGKPAWDWQAPPSEASLED 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAK 301
            + + +  DL  +  I EK  R ++I +L+ + V   +SE     +  ++ + F D++ +
Sbjct: 243 RVKEAVGSDLVEAYQIAEKQARTQRISELRSQAVEAIASEDESGPSAEDVKTAFHDLEYR 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD   R+DGRD++TVR IS Q  +L RTHGS++F RG+TQA+VV TLGT  D Q
Sbjct: 303 LVRDRILDGNPRIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D++ G +R+ FM+HYNF P  TGE   +G+P RREIGHGRLA+R +  V+P+  +FPY
Sbjct: 363 VIDAIEGERRDRFMLHYNFPPYCTGETGFVGSPKRREIGHGRLAKRGVAAVMPKAEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGL+K+GD F +LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT +G+TA+QMD+KI GI+  IM  AL QA+ GR+HIL  M++VL  
Sbjct: 483 DEDHLGDMDFKVAGTTNGVTALQMDIKIDGITREIMEQALAQAREGRMHILGCMNEVLPS 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++    PR   M I PD+IR+VIG GG  IR + E+TGA ++I DDGTVK+AS+  A
Sbjct: 543 HREEMSSHAPRFITMKINPDKIRDVIGKGGATIRALTEETGATIDIQDDGTVKVASTDQA 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A+  I  +T   EV + Y G+V K+MDFGAFV     RDGLVHISQ+S ERV   +
Sbjct: 603 AGLEAKRRIEELTADIEVGRQYTGKVAKIMDFGAFVSILPGRDGLVHISQISDERVENVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           D + EGD+V VK+L+ D +G+I+LSMK V+
Sbjct: 663 DFLSEGDSVTVKVLEVDKQGRIRLSMKAVE 692


>gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240013]
 gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M04-240196]
          Length = 706

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 471/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
 gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
          Length = 700

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/697 (43%), Positives = 437/697 (62%), Gaps = 4/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     +EWAGR L  E G+ A+Q++GAV+  YG+T VL+T    +  KD   FFPLTVN
Sbjct: 4   ESKVYSMEWAGRTLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKD-LPFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YA GKIPGG+++RE RP++N +L SR+IDR IRPLF   Y+N+ QVI  VM  D 
Sbjct: 63  YEERLYAAGKIPGGFIKREGRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
            +S  + +M+ +S AL +S +PF GP+ G  V  +NG++++NP   +     +DL V+GT
Sbjct: 123 NASSEMAAMIGSSMALSISDIPFGGPIAGVTVGRVNGEFIINPTTTQMADSDIDLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKL 240
           +DAV MVE  A Q+ E+ ++DAI+FGH+E K ++    ++     K  + +      + L
Sbjct: 183 KDAVNMVEAGAEQVPEEDMMDAILFGHDEIKRLVAFQEEIIAEVGKPKMEVQLLTTDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQ 299
           E E+ +     L  +  + EK  R   I D+  +++  + +E    +   E+  +   + 
Sbjct: 243 ETELREKAYGKLTEAAKVVEKAAREDAISDVYDEIMLDYVTEQPEEDRSKEVKEILNKLL 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  + +R DGR  + +R +S++V +L R HGS LF RG TQA+ V TLG   D
Sbjct: 303 KETVRELITKENIRPDGRKVDEIRPLSSEVDILPRAHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P    F
Sbjct: 363 VQILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEQVIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S++A+M AGVPI+ PVAGIAMGLVK G+D  +L+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTMAMMAAGVPITSPVAGIAMGLVKHGEDMTVLTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI GI+  ++  AL+QA+ GRL IL+ M   +
Sbjct: 483 QGMEDALGDMDFKVAGTKDGVTALQMDIKIEGINREVLKSALEQARDGRLKILDNMLSAI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L E+ P+++ M I PD+IR+VIG  GK+I  I+E+TG K++I+ DGTV I+   
Sbjct: 543 PEPRDELSEYAPKIKTMNIHPDKIRDVIGPSGKIINKIIEETGVKIDIEQDGTVFISGLD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           +  I  A   I  I    EV + Y G+V ++  FG FV     +DGLVHISQL+ ERV K
Sbjct: 603 VDMIHKALSTIEEIVREVEVGETYLGKVKRIEKFGCFVEIFKGKDGLVHISQLANERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVV  GD + VK+ + D++G++ LS K V     K
Sbjct: 663 VEDVVSIGDELLVKVTEIDNQGRVNLSRKAVLNEEAK 699


>gi|119504363|ref|ZP_01626443.1| Polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2080]
 gi|119459871|gb|EAW40966.1| Polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2080]
          Length = 714

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/699 (48%), Positives = 468/699 (66%), Gaps = 4/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +V     ++    + LETGRIARQ+ GAV+ T G T VL TVV  R ++ GQDFFPL+V
Sbjct: 1   MNVVKKTFQYGDHEITLETGRIARQASGAVMVTMGNTSVLCTVVAAREMRAGQDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+ YAVGKIPGG+ +RE+RP+E E L SR+IDR +RPLF   + NE QV+  VM  D
Sbjct: 61  HYIEKRYAVGKIPGGFFKREARPSEKETLTSRLIDRPVRPLFPNGFMNEVQVVCTVMSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGS-LDLFVS 179
            E+ P + +M+  SAAL +SG PF GP+ GA+V +     Y+LNP     + S LD+ V+
Sbjct: 121 SETDPDIPAMIGTSAALAISGCPFNGPIGGARVGFTEAKGYLLNPNYSALKNSQLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +LSED +L A++F H E + VI+AIS+L +   K      +    +
Sbjct: 181 GTSEAVLMVESEAQELSEDQMLGAVLFAHQEMQTVIKAISELVEEAGKPRWDWTAAPVDE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  +    K  L  +  I EK  R +++ +++   ++  + E    ++ +I   F+ +
Sbjct: 241 ALKAAVEGEAKSGLGEAYRITEKAARYERVGEVRDATIAALAVEGGP-SKDDIKDQFKAL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  ++  + R+DGRD  TVR I  +V +L + HGS+LF RG+TQAI  VTLG+  
Sbjct: 300 EKNIVRQRIISGEPRIDGRDGRTVRPIVCEVDVLDKAHGSALFTRGETQAIGAVTLGSSR 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +   LP   +
Sbjct: 360 DAQIIDALEGERRDPFMLHYNFPPYSVGEAGRIGFTSRREIGHGRLARRGLAATLPTEEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VC  SLA+M AGVP+  PVAGIAMGLVK+G+ F +L+D
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCVGSLAMMAAGVPVKAPVAGIAMGLVKEGNQFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ V
Sbjct: 480 ILGDEDHLGDMDFKVAGTSGGITALQMDIKIEGINEQIMEIALEQAMQARLHILGQMNSV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  R  + E  P +  + I  D+IR++IG GG  IR I E++GA V+I+DDGTVK+   
Sbjct: 540 LAAPREIVSENAPSMVQLKIDSDKIRDIIGKGGATIRSITEESGATVDIEDDGTVKVFGV 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    + A   I +IT   EV  IY+G + +++DFGAFV     +DGLVHISQ++ ERV 
Sbjct: 600 TKESRDHAVNAIMAITAEAEVGAIYEGTIARIVDFGAFVTILPGKDGLVHISQIAEERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +D +KEG+TV VK+LD D RG+IKLS+K V  + G  
Sbjct: 660 NVTDYLKEGETVRVKVLDVDQRGRIKLSIKEVAADEGTD 698


>gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
 gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
          Length = 706

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
 gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
          Length = 704

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/699 (43%), Positives = 457/699 (65%), Gaps = 4/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAGRPL +E G++A+Q++GAVL  YG+T VL+T    +S K   DFFPLT
Sbjct: 1   MNEKKVYSYEWAGRPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKP-LDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+ER YA GKIPGG+++RE RP+E  IL SR+IDR IRP+F   ++NE QVI  VM +
Sbjct: 60  VNYEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSN 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + +  + +MV +S AL +S +PF+GP+ G QV YING++++NP +++  Q ++ L V+
Sbjct: 120 DSDCTSEMAAMVGSSLALAISDIPFDGPIAGVQVGYINGEFIVNPTVEQSNQSTIHLSVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G +DA+ MVE  A ++ E+V+L+AI+FGH E K +I    ++     KE   +   +  +
Sbjct: 180 GNKDAINMVEAGALEVPEEVMLEAIMFGHEEIKKIIAFQEQIVAEVGKEKKPVTLFEIDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
            ++ ++    + D+  +    EK+ R + I  +K ++++ +  + +  +   ++ ++ + 
Sbjct: 240 AIQADIKAACETDMHDAIQTAEKHARDEAIQAVKDRIIASYEEQEADDDTMKQVYTILDK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +    VR  + + K+R DGR  + +R +S++ G+LQRTHGS LF RG TQA+ + TLG  
Sbjct: 300 MVKDEVRRQITEDKIRPDGRKLDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P  +
Sbjct: 360 GDVQIIDGLGVEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEAVIPDES 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R VSE+ ES+GS+S A++C S+LA+MDAGVP+  PVAGIAMGL+K G+ + IL+
Sbjct: 420 VFPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI G+S NI+  AL QAK GR+HIL  M  
Sbjct: 480 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+E R QL EF P++ I+ I PD+IR+VIG GGK I  I+E+TG K++ + DGT+ I+S
Sbjct: 540 TLAEPRTQLSEFAPKIVIVKINPDKIRDVIGPGGKQINKIIEETGVKIDTEQDGTIYISS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++      A+++I  I    +V + Y   V ++  FGAF      +DGL+HIS++  ER 
Sbjct: 600 ANEEMNARAKQIIEDIVREAKVGEYYLSTVKRIEKFGAFCEIFPGKDGLLHISEIQEERT 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +  DV+K GD + VK+++ D +G++ LS KVV Q   +
Sbjct: 660 KQVEDVLKLGDQLLVKVIEIDKQGRVNLSRKVVLQEEKE 698


>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
 gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
          Length = 716

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/701 (48%), Positives = 473/701 (67%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++    + LETG IARQ+ GAV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKSFQYGKHTVTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y NGQY+LNP   E   S LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYANGQYLLNPSKTELATSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EAN L EDV+L A++FGH + + VI AI++LA     E     + +  +
Sbjct: 181 GTKQAVLMVESEANILPEDVMLGAVVFGHEQMQAVINAINELADEVNPEVWDWKAPETNT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
           +L  ++ ++    +  +  I +K  R  ++D+    + +   +E +    + EI  +F+ 
Sbjct: 241 ELVAKVREIAGATIAEAFKIRQKQARSAKLDEAWAAVEAALINEETDTLAKNEIKGIFKQ 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR  +L  + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP   
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPDPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + + F +L+
Sbjct: 421 DFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILSQMQA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L +  PR+  M I PD+IR VIG GG+ IR I  +T  ++NI DDG V IA+
Sbjct: 541 AVAGP-QELSQHAPRLYTMRINPDKIREVIGKGGETIRSITAETHTEINISDDGVVTIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    EAA+  I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTAEAGEAAKARIEMITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RV   +D +K G  V VK LD D+RG+++LS++ +     +
Sbjct: 660 RVKDVNDYLKVGQVVNVKALDVDERGRVRLSIRALLPQPER 700


>gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis alpha710]
 gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M6190]
 gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ES14902]
          Length = 706

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/702 (47%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
 gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
          Length = 705

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/695 (44%), Positives = 453/695 (65%), Gaps = 4/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                ++WAGR L++E G++A+Q++GA L  YG+T VL+T    ++ K   DFFPLTVNY
Sbjct: 5   KKVYTLDWAGRELQVEVGQLAKQANGAALIRYGDTAVLSTATASKTPKP-LDFFPLTVNY 63

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E   L SR+IDR IRPLF   ++NE QVI  VM  D +
Sbjct: 64  EERLYAVGKIPGGFIKREGRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQD 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
               + +M  +S ALM+S +PF GP+ G  V  I+GQY++NP  D+ +Q S++L V+GT+
Sbjct: 124 CPSEMAAMFGSSLALMISDIPFGGPIAGVIVGLIDGQYIINPTNDQLEQSSINLIVAGTK 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DA+ MVE  A ++SE+V+L+AI+FGH E K +I    ++A+   K    I   +  ++L 
Sbjct: 184 DAINMVEAGAKEVSEEVILEAIMFGHEEIKKLIAFQEQIAEEVGKAKSDIQLYELDAELT 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +   ++ DL  +  I EK  R + ID++K + ++ +  E     + +   + + +   
Sbjct: 244 SSLKDAVEADLNAAVQINEKQARNEAIDEVKARAMAAY-EESDDAVKKQAGQILDKMVKD 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++ D+K+R DGR    +R +S++VG+L RTHGS LF RG TQA+ + TLG   D Q
Sbjct: 303 EVRRLITDEKIRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       FM HYNF   + GE   +  P RREIGHG L  RA+  V+P    FPY
Sbjct: 363 IIDGLGIEDTKRFMHHYNFPLFSVGETGFLRGPGRREIGHGALGERALEAVIPNEKDFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+V+E+ ES+GS+S A++C S+LA+MDAGVP++ PVAGIAMGLVK GD++ +LSDI G
Sbjct: 423 TIRLVAEVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLVKKGDNYTVLSDIQG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI G+S  I+  AL QA+ GR+HIL  M   ++E
Sbjct: 483 MEDHLGDMDFKVAGTAKGITALQMDIKIDGLSREILEEALTQAQIGRIHILESMLATIAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L ++ P++ ++ I PD+IR+VIG GGKVI  I+++TG K++ + DGT+ I+S    
Sbjct: 543 PRTTLSKYAPKIIMVKINPDKIRDVIGPGGKVINKIIDETGVKIDTEQDGTIFISSVDEE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A+ MI +I    +V + Y+G+V ++  FGAFV     +DGL+HIS++  ER  +  
Sbjct: 603 MNAKAKAMIENIVREAKVGEYYEGKVKRIEKFGAFVELFPGKDGLLHISEIQEERTKEVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV+K    + VK+++ D +G++ LS KVV +   +
Sbjct: 663 DVLKMDQIIQVKVIEIDRQGRVNLSRKVVLKEQKE 697


>gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Paris]
 gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Paris]
          Length = 729

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/697 (48%), Positives = 482/697 (69%), Gaps = 2/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNY
Sbjct: 3   KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGESNDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E
Sbjct: 63  QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
            SP +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP   ++++  LDL ++GT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREVGKSKPEWKAPEIDTVLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + + ++  +  I +K  R +++D+L+++ +S   +E+   N   I ++F +++  
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERS 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q
Sbjct: 303 IVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP T +FPY
Sbjct: 363 ILDGISGETRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LRIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI G
Sbjct: 423 VLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E
Sbjct: 483 DEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S    
Sbjct: 543 HRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKM 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  ER  K  
Sbjct: 603 ALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAERTQKVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +V++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 663 EVLQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|254282476|ref|ZP_04957444.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR51-B]
 gi|219678679|gb|EED35028.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR51-B]
          Length = 717

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/692 (49%), Positives = 471/692 (68%), Gaps = 4/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +V +   ++ G  + LETGRIARQ+ GAV+ T G+T VL TVV  RS++ GQDFFPL V
Sbjct: 1   MNVVSKSFQYGGHEVTLETGRIARQASGAVMVTMGDTSVLCTVVAARSMRPGQDFFPLAV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+TY+VGKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  VM   
Sbjct: 61  HYIEKTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSAG 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS-LDLFVS 179
            E  P + +M+  SAAL +SG PF GP+ GA+V +   + Y+LNP     + S LD+ V+
Sbjct: 121 PEIDPDIPAMIGTSAALAISGAPFNGPIGGARVGFTEAEGYLLNPTYSALKSSKLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE +A+QL+ED +L A++F H E + VI AI++L     K      +    +
Sbjct: 181 GTKDAVLMVESQADQLTEDQMLGAVLFAHQEMQAVIHAINELVADAGKPRWEWQAPAVDE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  +       L  +  I EK  R +++ +++  +V   ++E       +I  VF+ +
Sbjct: 241 GLQSAVEAEAGAALGEAYRITEKAARYERVGEVRNAVVEKLAAEDGP-TADDIKDVFKGL 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +LD + R+DGRD  TVR I+ ++ +L + HGS+LF RG+TQAI  +TLG+  
Sbjct: 300 EKRIVRQRILDGEPRIDGRDGRTVRPIACELDILSKVHGSALFTRGETQAIGAITLGSTR 359

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF P + GE  R+G  SRREIGHGRLARR +  VLP   +
Sbjct: 360 DAQIIDALEGERRDPFMLHYNFPPYSVGEAGRIGFTSRREIGHGRLARRGLAAVLPTEEE 419

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VC  SL LM AGVP+  PVAGIAMGLVK+G++F +L+D
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCVGSLGLMAAGVPLKAPVAGIAMGLVKEGNNFAVLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT SG+TA+QMD+KI GI+E IM +AL+QA + RLHIL +M+ V
Sbjct: 480 ILGDEDHLGDMDFKVAGTASGVTALQMDIKIEGINEQIMEIALEQALQARLHILGQMNAV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R    E  P +  + +  D+IR++IG GG  IR I E++GA V+I+DDGTVK+   
Sbjct: 540 IDAPREITSENAPSMVALKVDSDKIRDIIGKGGATIRQITEESGATVDINDDGTVKVFGQ 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           + A  +AA +MI  IT   EV  +Y G V +++DFGAF+     +DGLVHISQ++ ERV 
Sbjct: 600 TQAARDAAVDMIMEITAEAEVGAVYTGTVARIVDFGAFITILPGKDGLVHISQIAEERVE 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             SD + EG+ V VK+LD D RG+IKLS+K +
Sbjct: 660 NVSDYLTEGEEVRVKVLDVDQRGRIKLSIKEL 691


>gi|229822930|ref|ZP_04449000.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
 gi|229787743|gb|EEP23857.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
          Length = 700

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/697 (43%), Positives = 447/697 (64%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M + H      AGRPL +E G +A+Q++GAVL  YG+TVVL+  V  +    G DFFPLT
Sbjct: 1   MSNKHVFSTTLAGRPLSVEIGELAKQANGAVLVRYGDTVVLSAAVASKKAGTG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YAVGK+PGG+++RE RP+E   L SR+IDR +RP+F +  +NE Q+   V+  
Sbjct: 60  VHYIEKMYAVGKVPGGFIKREGRPSEAATLTSRLIDRPLRPMFPEGVRNEIQITNTVLSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + +P + +M+ AS AL +S +PF+GPV G  V  +NG+ V+NP + + +   ++L V+
Sbjct: 120 DQDCTPEMAAMLGASLALAVSDIPFDGPVAGVNVGRVNGEIVINPTVAQAELSDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT  A+ MVE  A ++SE  +L+A++ GH   K ++   +++     KE       + + 
Sbjct: 180 GTATAINMVESSAKEVSEADMLEALLKGHAAIKELVAFQNEIVAQIGKEKFEFTLAEVAP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
           ++  ++ +  K  +  +    EK  R   +D + ++   +F++ ++  ++      ++ +
Sbjct: 240 EVAAQVGERYKSRMIQAIQTQEKKAREAAVDAVMEEATEFFAAVYADRDDYDQLMKDVST 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
              D++   VR ++  ++VR DGR  + +R +S+ V LL R HGS LF RG TQ +   T
Sbjct: 300 ALHDLEKDEVRRLITKERVRPDGRRIDEIRPLSSSVALLPRVHGSGLFTRGQTQVLTAAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + GE  R+G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQVIDGLGIEEGKRFIHHYNFPNFSVGETGRVGSPGRREIGHGALGERALKQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV +G+D+
Sbjct: 420 PAPEDFPYTIRLVSEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVMEGEDY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E I+  AL QAK+ RL IL+
Sbjct: 480 TVLTDIQGLEDHLGDMDFKVAGTAAGITALQMDIKIQGITEAILTEALTQAKKARLEILD 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E+   L E+R +L  + P+++I+ I PD+I+ VIG GG+ I GI++ TG K++ID  G V
Sbjct: 540 ELVSTLPEARKELSPYAPKIDIIQINPDKIKVVIGRGGETINGIIDATGVKIDIDQTGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I  AR+MI  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L 
Sbjct: 600 SIASSDQDMINKARQMIEDLVREVEVGQVYTGKVKRIEKFGAFVEVLPGKDGLVHISELE 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             RVA+  DV+K GD V VK+++ D++G+I LS KV+
Sbjct: 660 HRRVAQVEDVLKIGDVVEVKVIEIDNQGRINLSRKVL 696


>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           FAM18]
 gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis FAM18]
          Length = 711

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/702 (47%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 6   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 65

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 66  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 125

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 126 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 185

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 186 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 245

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 246 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 306 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 366 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 426 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 485

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 486 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 546 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 605 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 664

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 665 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 706


>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
          Length = 769

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/696 (47%), Positives = 476/696 (68%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   +W    + +ETG IARQS GAV+ +  +TVVLATVV     K GQDFFPLT
Sbjct: 3   MFNKVTKSFQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKSDAKAGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR IRPLF + + NE QV+I+V+  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+A SAAL +SG+PF GP+  A+V Y+NG+YVLNP   +   S +DL V+
Sbjct: 123 NPEVQADIPAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
           GT+ AVLMVE EA  LSE+V+L A++FGH++ K  I AI++L +   K            
Sbjct: 183 GTEAAVLMVESEATGLSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               +++ + +E LR +  I  K  R +    +   + +    E  +++   + ++  +I
Sbjct: 243 AFIAKVTALAEEPLRAAYQIRSKQARTQATRAVGASVQAALKEEGVAFDPVAVDNLLFEI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR  +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 303 EARIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPNKDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+L+DAGVP+   VAGIAMGL+K+G+ F +L+D
Sbjct: 423 FPYTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QAK  RLHIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  ++ ++ +F PR+  M I P++IR+VIG GG  IR + ++TG  ++I +DGT+ IAS+
Sbjct: 543 VGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +   A++ I  IT   E+ K+Y+G + K++DFGA V+    +DGL+HISQ++ +RV 
Sbjct: 603 DADKAAFAQKRIEEITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQIAHQRVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D ++EG  + VK+L+ D++G+IKLSMK +    
Sbjct: 663 KVTDFLEEGQVIKVKVLETDEKGRIKLSMKALLDKP 698


>gi|297617194|ref|YP_003702353.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145031|gb|ADI01788.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 717

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/703 (42%), Positives = 455/703 (64%), Gaps = 9/703 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + E AGRPL++E G++A+Q++GA L  YG+TVVL T    +  ++G DFFPLT 
Sbjct: 1   MEHKVYQTEIAGRPLRVEIGKVAKQANGAALLYYGDTVVLVTATASKEPREGIDFFPLTC 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER YAVG+IPGG+++RE RPTE  IL +R++DR IRPLF K ++N+  V+  VM  D
Sbjct: 61  DYEERLYAVGRIPGGFIKREGRPTEAAILSARLMDRPIRPLFPKGFRNDVHVVATVMSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            ++ P+V +++ AS AL +S +PF GP+    V  ++G++V+NP +++  +  + L V G
Sbjct: 121 QDNPPNVTAIIGASIALSISDIPFAGPIGAVIVGMVDGEFVINPTVEQSARSQMHLTVGG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T+DA++MVE  AN++ E+ +LDAI F H E K +I+   K+          +   +   +
Sbjct: 181 TRDAIVMVEARANEVPEETMLDAIFFAHEEIKRIIDFQEKIVAEIGLPKREVVVPEIDPE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +E  + +     L  +    +K  R  + +    ++  +F+  +   +  E+ S+ + I 
Sbjct: 241 IEAAVREYGIPILEEAIRCSDKLQREARTEAAADEIKQHFAEIYPEQD-KEVASIIDKIT 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++LD+ +R+DGR    +R +S +VG+L RTHGS LF RG TQ + V TLG   +
Sbjct: 300 KEIVRRMILDEGIRVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLSVTTLGAVGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D L   +   ++ HYNF P + GE   +  P RREIGHG LA +A+  VLP   +F
Sbjct: 360 EQILDGLGVEESKRYLHHYNFPPYSVGETRPIRGPGRREIGHGALAEKALEAVLPSQEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+SM +VCGS+L+LM AGVPI +PV+GIAMGLVK+GD F +LSDI
Sbjct: 420 PYTIRVVSEVLESNGSTSMGSVCGSTLSLMHAGVPIKRPVSGIAMGLVKEGDRFAVLSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAG+  G+TA+QMD+KI G++  I+  AL+QAK GR++I++ M K +
Sbjct: 480 QGIEDALGDMDFKVAGSAEGVTALQMDIKIPGVTREILHAALKQAKEGRMYIMDIMMKAI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+   +L  + PR+  M I  D+IR VIG GGK+I+ I+++TGA+++I+DDG++ I +S 
Sbjct: 540 SQPNPELSPYAPRMIRMMIDTDKIRQVIGPGGKIIKKIIDETGARIDIEDDGSLFIVASD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLS 653
               E A+  +  +T   EV K Y G+VV++ DFGAFV           ++GLVHIS+L+
Sbjct: 600 QESAEKAKYYVECLTKDVEVGKTYVGKVVRIADFGAFVEIIPGVLGLPGKEGLVHISKLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             RVAK  DVV  GD + VK+ + D +G+I LS +   Q   +
Sbjct: 660 ENRVAKVRDVVDIGDEILVKVTEIDSQGRINLSRREALQQAQR 702


>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
 gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
          Length = 707

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/702 (47%), Positives = 476/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELLAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K + +   + 
Sbjct: 661 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLEAPARE 702


>gi|332307057|ref|YP_004434908.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174386|gb|AEE23640.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 703

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/696 (47%), Positives = 465/696 (66%), Gaps = 2/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+  AV+A+  +T VL +VV  +  K GQDFFPLTVNY
Sbjct: 3   PITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE Q+I+ V+  + E
Sbjct: 63  QERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               ++S++  SAAL +SG+PF GPV  A+V Y +GQYVLN R  E + S LDL V+GT+
Sbjct: 123 IPTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AVLMVE EA  LSEDV+L A+++GH + + V+ A+++ A           ++  +  L+
Sbjct: 183 GAVLMVESEAEVLSEDVMLGAVMYGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVSLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +++  + + ++  +  I +K  R   I  L  K V+         +  E+  +  ++++ 
Sbjct: 243 DKIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADEEQDAKEVSELLHELESD 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGRD   +R +    G+L RTHGS+LF RG+TQAIV  TLGT  D Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY
Sbjct: 363 MIDGLNGKEDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +S 
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+IR+VIG GG +IR I E +   + I+DDGT+KI ++  A
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATERA 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  +T   E  K Y+G+V +++DFGAFV     ++GLVHISQ++ ERV K +
Sbjct: 603 KADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           D + EG  + VK+++ D + +++LS+K + +    P
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAP 698


>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 705

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/695 (48%), Positives = 473/695 (68%), Gaps = 6/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP   
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I +IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEAITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV   SD ++ G  V VK L+ DDRG+++LS+K +
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKAL 694


>gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
           ATCC 25976]
 gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
           ATCC 25976]
          Length = 707

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/698 (47%), Positives = 476/698 (68%), Gaps = 3/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTV
Sbjct: 1   MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYAVG+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + NE QV+  V+  +
Sbjct: 61  NYQERTYAVGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            + SP +V+M+ ASAAL LSG+PF GP+  A++ +IN Q+VLNP + ++ Q  LDL V+G
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA+ LSE+ +L A++FGH + + VIE I +  K   K      + + +  
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++  + +  +  +  I EK  R +QID +K  +++  +++  + +EG IV +   ++
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDVIKADVIAQLTAQDETISEGAIVDIITALE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + VVR  +L  + R+DGR  +TVR +    G+L RTHGS++F RG+TQA+ V TLGT  D
Sbjct: 301 SSVVRGRILAGEPRIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQIIDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ + F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QAK  R+HIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMGQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
                 + +F PR+  M I P +I++VIG GG VIR + E+TG  ++IDDDGTVKIA++ 
Sbjct: 541 PAP-ADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAATD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +     I  I    EVN IYKG+V++V+DFGAFV   G ++GLVHISQ++ ERV +
Sbjct: 600 NNAAKTVMARIEDIVAEVEVNAIYKGKVIRVVDFGAFVSILGGKEGLVHISQITNERVER 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +D +  G  V VK+++ D + +I+L+MK ++ +   P
Sbjct: 660 VADYLNVGQEVAVKVVEIDRQNRIRLTMKDINNDAATP 697


>gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
 gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 729

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/697 (47%), Positives = 481/697 (69%), Gaps = 2/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNY
Sbjct: 3   KITKEIVFGNHNLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E
Sbjct: 63  QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
            SP +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP   ++++  LDL ++GT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREVGKSKPEWKAPEIDTVLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + + ++  +  I +K  R +++D+L+++ +S   +E+   N   I ++F +++  
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERS 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q
Sbjct: 303 IVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY
Sbjct: 363 ILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LRIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI G
Sbjct: 423 VLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E
Sbjct: 483 DEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S    
Sbjct: 543 HRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKM 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  
Sbjct: 603 ALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +V++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 663 EVLQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|109897953|ref|YP_661208.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
           atlantica T6c]
 gi|123064734|sp|Q15VD4|PNP_PSEA6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109700234|gb|ABG40154.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 703

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/696 (47%), Positives = 464/696 (66%), Gaps = 2/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+  AV+A+  +T VL +VV  +  K GQDFFPLTVNY
Sbjct: 3   PITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE Q+I+ V+  + E
Sbjct: 63  QERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
               ++S++  SAAL +SG+PF GPV  A+V Y +GQYVLN R  E +   LDL V+GT+
Sbjct: 123 IPTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLDLVVAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            AVLMVE EA  LSEDV+L A++FGH + + V+ A+++ A           ++  +  L+
Sbjct: 183 GAVLMVESEAEVLSEDVMLGAVMFGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVTLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +++  + + ++  +  I +K  R   I  L  K V+      +  +  E+  +  ++++ 
Sbjct: 243 DKIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADAEQDAKEVSELLHELESD 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGRD   +R +    G+L RTHGS+LF RG+TQAIV  TLGT  D Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L+G   + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY
Sbjct: 363 MIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ ++F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +S 
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ EF PR+  + I  D+IR+VIG GG +IR I E +   + I+DDGT+KI ++  A
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATERA 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  +T   E  K Y+G+V +++DFGAFV     ++GLVHISQ++ ERV K +
Sbjct: 603 KADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           D + EG  + VK+++ D + +++LS+K + +    P
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAP 698


>gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 742

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/695 (49%), Positives = 474/695 (68%), Gaps = 3/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T   ++    + LETGR+ARQ+ GAVL + G+T VL TVV  +  ++G+ FFPL+V
Sbjct: 1   MNPVTKTFQFGNDTVTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+ YA GKIPGG+ +RE+RP+E E L SR+IDR IRPLF   + NE QV+  V+  +
Sbjct: 61  HYVEKAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAE 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDED-QGSLDLFVS 179
            +  P + +M+  SAAL +SG+PF GP+ GA+V Y     YVLNP      +  LD+ V+
Sbjct: 121 NDVDPDIAAMIGTSAALSISGIPFNGPIGGARVGYTQEAGYVLNPSYSALAESELDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT+DAVLMVE EA++L ED++L A++F H EC+ V++AI++LAK   K       +++ +
Sbjct: 181 GTKDAVLMVESEASELPEDIMLGAVLFAHQECQAVVQAITELAKDAGKPRWEWSVAEENA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L+  +++     +  +    +K  R  ++   + + V+   +E +      + S F  +
Sbjct: 241 ELKAAVAEQFGAAIADAYRTTDKMERYGKLTASRDEAVAALVNEEAGVTADAVKSAFSKL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + VR  ++  + R+DGRD+ TVR I  +VG+L + HGSSLF RG+TQAIVV TLG   
Sbjct: 301 EKQTVRKSVVAGEPRIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLGNAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +R+ FM+HYNF   + GE  RMG+ SRREIGHGRLARR +  VLP    
Sbjct: 361 DSQIIDALEGERRDPFMLHYNFPSYSVGECGRMGSTSRREIGHGRLARRGVAAVLPTQED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSEITES+GSSSMA+VCG+SLA+MDAGVP+  PVAGIAMGLVK+   F +L+D
Sbjct: 421 FPYTIRIVSEITESNGSSSMASVCGASLAMMDAGVPLKAPVAGIAMGLVKEESGFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL QA + RLHIL EM+KV
Sbjct: 481 ILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALGQALQARLHILAEMNKV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR ++ E  PR E + + PD+IR++IG GG  IR I E+TGA V+IDD G VK+ ++
Sbjct: 541 ISTSRTEVSENAPRFETIKVDPDKIRDIIGKGGATIRSITEETGASVDIDDTGLVKVYAA 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++AA   I  IT   E+  IY+G V +++DFGAFV F   +DGLVHISQ++ ERV 
Sbjct: 601 DNEALQAAMNKIGEITAEAEIGAIYEGVVARIVDFGAFVTFLPGKDGLVHISQIAEERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             SD +KEG TV VK LD D RG+IKLS+K  +  
Sbjct: 661 AVSDYLKEGQTVKVKCLDVDQRGRIKLSIKEANAE 695


>gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 729

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/697 (47%), Positives = 481/697 (69%), Gaps = 2/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNY
Sbjct: 3   KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E
Sbjct: 63  QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
            SP +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP   ++++  LDL ++GT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + + ++  +  I +K  R +++D+L+++ +S   +E+   N   I ++F +++  
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADVIANMFGELERS 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q
Sbjct: 303 IVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY
Sbjct: 363 ILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LRIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI G
Sbjct: 423 VLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E
Sbjct: 483 DEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNALAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G V++ S    
Sbjct: 543 HRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVVQLFSPDKM 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  
Sbjct: 603 ALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +V++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 663 EVLQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|164688511|ref|ZP_02212539.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
           16795]
 gi|164602924|gb|EDQ96389.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
           16795]
          Length = 701

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/699 (42%), Positives = 446/699 (63%), Gaps = 2/699 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +E AGR L +E G+IA+ + G+ +  YGET+V+  V      ++G DFFPL+
Sbjct: 1   MFEHKIFTMELAGRELSVEIGKIAQLASGSAILKYGETMVMVNVSKSAEPREGVDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGKIPGG+L+RE + +E   L SR+IDR IRPLF K ++N+ QV+  V+  
Sbjct: 61  VDYEEKLYSVGKIPGGFLKREGKASEKATLTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P VV+M+ +S AL +S +PF GP     V  ++G  V+NP  ++ ++ SL L VS
Sbjct: 121 DHDCTPDVVAMIGSSVALSISEIPFNGPTGSVNVGLVDGALVINPTAEQREKSSLHLTVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+DAV+MVE  A+++ E ++L+AI+  H E K ++  I ++     KE +  I+ K   
Sbjct: 181 GTKDAVMMVEAGADEVPESLMLEAILTAHEEIKKIVAFIEEIVAEVGKEKMEFIEPKADE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +E ++ ++  + ++ +  + EK  R + +D +K +++  F  E      G+IV+V + I
Sbjct: 241 DIEAKVRELATDKMKEAVRVIEKLERQEAMDAVKNEVLDSFDEEALEEFGGDIVAVLDKI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR +++ +  R D R ++ +R I    G + RTHGS LF RG TQ + + TLG   
Sbjct: 301 IKEEVRKMIVHEGRRPDARKTDEIRPIWCDCGFIPRTHGSGLFTRGQTQVMTITTLGALG 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L   +   +M HYNF   + GEV     P RREIGHG LA RA+ PV+P   +
Sbjct: 361 DVQILDGLDEEESKRYMHHYNFPAYSVGEVRPSRGPGRREIGHGALAERALLPVIPSKEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSE+  S+GS+S  +VCGS+L+L+DAGVPI   VAGIAMGL++      ILSD
Sbjct: 421 FPYAIRLVSEVLSSNGSTSQGSVCGSTLSLLDAGVPIKDMVAGIAMGLIEQDGKIAILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT+ GITA+QMD+KI GI E I+  AL QA+ GRLHILNEM K 
Sbjct: 481 IQGMEDHLGDMDFKVAGTEHGITAIQMDIKIAGIDEEILRTALAQARVGRLHILNEMRKT 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R  L ++ P++  M I PD+IR+VIG GGKVI  I+++TG K++I+  G V I+  
Sbjct: 541 IDAPRPHLSKYAPKIITMNINPDKIRDVIGPGGKVITKIIDETGVKIDIEQTGEVFISGI 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+ A++ I  I    EV ++YKG+V ++++FGAFV     ++GL+HIS ++ ERV 
Sbjct: 601 DQEMIDLAQKKISDIVAEVEVGQVYKGKVTRILNFGAFVELLPGKEGLLHISHIAHERVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K  DV+  GD V VK+ + D++G++ +S K +     K 
Sbjct: 661 KVEDVLNIGDEVEVKVTEIDEKGRVNVSRKALLPKPKKD 699


>gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
 gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
          Length = 723

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/695 (46%), Positives = 468/695 (67%), Gaps = 4/695 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGRPL +ETG +A+Q++GAVL  YG+TVVL+T    R  K   DFFPLTVN
Sbjct: 4   EKRVFSIDVAGRPLIVETGELAKQANGAVLVRYGDTVVLSTATASREAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL+SR+IDR IRPLF++ ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + +P V +++ +S AL +S +PFEGP+ G  V  ++GQ+V+NP +++ +   L L V+GT
Sbjct: 123 DCAPEVAALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + +   +    L
Sbjct: 183 KDAINMVEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPAL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
           E E+ Q+ + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   + 
Sbjct: 243 EAEIRQLAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GRL IL+ M + L
Sbjct: 483 QGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE R +L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S  
Sbjct: 543 SEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+  RV K
Sbjct: 603 EAANQKAKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             DVV  GD + VK+ + D +G++ LS K V ++ 
Sbjct: 663 VEDVVSIGDEILVKVTEIDKQGRVNLSRKAVLRDA 697


>gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 706

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/702 (47%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 701


>gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium
           petroleiphilum PM1]
 gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein
           [Methylibium petroleiphilum PM1]
          Length = 751

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/696 (47%), Positives = 483/696 (69%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + LETG IARQS GAV+     TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKITKTFQWGQHTVTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE RP+E E L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E+S  + +++ +SAAL +SG+PF GP+  A+V YING+YVLNP   +   S LDL V+
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPIGAARVGYINGEYVLNPGPTQLADSKLDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA+QL ED++L  ++FGH +    +  I++L +   K            
Sbjct: 183 GTEAAVLMVESEADQLPEDIMLGGVVFGHEQGNIAVRVINELVREAGKPEWQWTPPAKDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               +++ + +  LR +  I  K  R +       ++++  ++E ++ ++ ++ ++  DI
Sbjct: 243 DFIAKVNGLGEAKLRAAYQIRSKQDRTQATRAAYAEVLAALAAEGAAVDKVKVENLLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L  + R+DGRD+ TVR I  +  +L RTHGS+LF RG+TQA+V+ TLGT  
Sbjct: 303 EAKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + FM HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 363 DTQRIDALAGEFEDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKKDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y +R+VSEITES+GSSSMA+VCG  L++MDAGVP+   VAGIAMGL+KDG+ F +L+D
Sbjct: 423 FAYAIRVVSEITESNGSSSMASVCGGCLSMMDAGVPLKAHVAGIAMGLIKDGNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  ++ +L  F PR+ +M I P++IR+VIG GG  IR + E+TG ++NI++DGT+ IAS+
Sbjct: 543 LGGAKEELSVFAPRLYVMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + +AA + I  IT   E+ K+Y+G V K++DFGA V+    +DGL+HISQ++ +RV 
Sbjct: 603 DGDKAQAAMKRIEEITAEAEIGKVYEGPVTKILDFGALVNILPGKDGLLHISQIAHQRVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D + EG  V VK+L+ D++G+IKLS+K + +  
Sbjct: 663 KVTDFLTEGQIVKVKVLETDEKGRIKLSLKALLERP 698


>gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
 gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
          Length = 696

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/687 (48%), Positives = 474/687 (68%), Gaps = 3/687 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V++E  GR + +ETG++A+Q+ GAV+ + G+T VL T V  ++ K+GQDFFPLTVNYQ
Sbjct: 3   TKVQVECGGRTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE+RP++NE L  R+IDR IRPLF   + N+TQ++  V+  D ++
Sbjct: 63  EKAYAGGKIPGGFFKREARPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P ++SMV ASAALM+S +PF+GP+ G +V  I+G++V NP  +E +   +++ V+ ++D
Sbjct: 123 DPGILSMVGASAALMVSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSDIEIVVAASKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A++MVE  A ++SE+ +L+AI FGH   + ++ A  +LA+        +     ++ L+ 
Sbjct: 183 AIIMVEGSAAEVSEEDMLEAIFFGHAAIQGLLAAQVELAEKAGVAKREVLPPVVNEALKA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ ++    ++ +  I  K  R   ID +  ++++  + E       EI     D +  +
Sbjct: 243 KVKELAYSRMKEAVRIKSKVERHNTIDTITGEVLTALAEEFEGA-AKEIKGFLGDFEYDL 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++    R+DGRD++T+R I+ +VGLL R HGS+LF RG+TQA+VV TLGT  DEQ 
Sbjct: 302 VREHIIKDGERIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDEQR 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DSL G  +  F++HYNF P + GE S   AP RREIGHG LA RA+  V+P+   FPYT
Sbjct: 362 IDSLFGESKKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALARVVPKHESFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVS+I ES+GSSSMA+VCG S+++MDAG+PI  PVAGIAMGL+K+GDDF ILSDI GD
Sbjct: 422 IRIVSDILESNGSSSMASVCGGSMSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILGD 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +G+TA+QMD+KIGG++  IM +AL+QA  GRLHIL++M++ +  S
Sbjct: 482 EDHLGDMDFKVAGTSTGVTALQMDIKIGGVTREIMGVALKQAHEGRLHILSKMAETIGTS 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           + +L  F PR+  + +  D+IR+VIG GGK IRGI E TG  ++IDD G + IAS+  A 
Sbjct: 542 KAELSTFAPRITTIYVKTDKIRDVIGSGGKNIRGITEATGVTIDIDDTGKINIASTDKAA 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A +MIR +T   E  K+Y G V KVM+FGAFV      DGLVHIS+L TERV   +D
Sbjct: 602 CDMAIKMIRDLTAEAEEGKLYMGLVKKVMEFGAFVEIFPGTDGLVHISELDTERVKNVTD 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V+KEGD V VK +  D +GKIKLS K 
Sbjct: 662 VLKEGDKVLVKCIGIDKQGKIKLSRKE 688


>gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           CU385]
          Length = 706

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis M23590]
 gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis M23590]
          Length = 698

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/696 (45%), Positives = 462/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ +Q  LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH+E K ++E   ++           I  +    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHDEIKRLVEFQQQIVDHLQPVKSEFIPVERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
              +  + +E  L+ +    +K  R   +D+LK ++ + F  E    NE    E+ ++  
Sbjct: 243 VSRVQALTEEKGLKETVLTFDKKQRDDNLDELKAEIAAEFIDEADPENELLINEVHAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++  +K+R DGR  + +R + ++VG+L R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIAAEKIRPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   Q   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQIIDGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 SKFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L  + P+VEIM I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDHPRAELSAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIYIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ++E+I +IT   EV +IY  +V ++  +GAFV     +D L+HISQ+S +R
Sbjct: 603 AVDQAMINRSKEIIEAITREAEVGQIYDAKVKRIEKYGAFVEIFSGKDALLHISQISKDR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S KV+ +
Sbjct: 663 INKVEDVLKIGDTIKVKITEIDKQGRVNASHKVLVE 698


>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           MC58]
 gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           MC58]
          Length = 707

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 661 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 702


>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
 gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
          Length = 706

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP   
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV   SD ++ G  V VK L+ DDRG+++LS+K + +   + 
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALTEAPARE 701


>gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           kaustophilus HTA426]
 gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Geobacillus kaustophilus HTA426]
          Length = 723

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/695 (46%), Positives = 467/695 (67%), Gaps = 4/695 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGRPL +ETG +A+Q++GA L  YG+TVVL+T    R  K   DFFPLTVN
Sbjct: 4   EKRVFSIDVAGRPLIIETGELAKQANGAALVRYGDTVVLSTATASREAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL+SR+IDR IRPLF++ ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + +P V +++ +S AL +S +PFEGP+ G  V  ++GQ+V+NP +++ +   L L V+GT
Sbjct: 123 DCAPEVAALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + +   +    L
Sbjct: 183 KDAINMVEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPAL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
           E E+ Q+ + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   + 
Sbjct: 243 EAEIRQLAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GRL IL+ M + L
Sbjct: 483 QGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE R +L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S  
Sbjct: 543 SEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+  RV K
Sbjct: 603 EAANQKAKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             DVV  GD + VK+ + D +G++ LS K V ++ 
Sbjct: 663 VEDVVSIGDEILVKVTEIDKQGRVNLSRKAVLRDA 697


>gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 701

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/702 (49%), Positives = 470/702 (66%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  D+ +K GQDFFPLT
Sbjct: 1   MFDKHIKTFQYGKHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y +G Y+LNP   E + S LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH + + VI AI++LA     E     + +   
Sbjct: 181 GTAKAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIAAINELADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
           +L  ++ ++    +  +  I  K  R  +I +    + +   +E +      EI  +F+ 
Sbjct: 241 ELVAKVREIAGATIAEAFKIRSKQARSAKIAEAWSAVEAALINEDTDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR  +LD + R+DGRD+ TVR I+ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPEPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + + F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QAK  RL+IL +M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLYILAQMKE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +     +L +  PR+  M I PD+IR VIG GG+ IR I  +TG ++NI+DDGTV IA+
Sbjct: 541 AVDGP-QELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETGTEINIEDDGTVTIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    EAAR+ I  IT   EV KIY+G VVK++D   GA V     +DGLVHIS+++ E
Sbjct: 600 TTSEAGEAARKRIEEITAEVEVGKIYEGTVVKILDNNVGAIVTVMPGKDGLVHISEIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G TV VK L  DDRG+++LSMK +       
Sbjct: 660 RVKNVGDYLQVGQTVNVKALAVDDRGRVRLSMKALLDKPAAE 701


>gi|257870995|ref|ZP_05650648.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
           EG2]
 gi|257805159|gb|EEV33981.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
           EG2]
          Length = 705

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/697 (44%), Positives = 459/697 (65%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLQVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F+  ++NE QV   VM  
Sbjct: 60  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFADGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCSPAMAAMLGSSLALSISDVPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ A+ MVE  A ++SED +L A++FG    K ++    ++     K  + +   +  +
Sbjct: 180 GTKKAINMVESGAKEVSEDDMLGALLFGFEAIKELVAFQEEIVAAVGKPKMEVTLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+     + ++ +    EK  R  +ID++K+ +   ++      E       E+  
Sbjct: 240 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDNVKETVKEVYAEKFAGHEDEGQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALSQAKKARMEILN 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L  + P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSPYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   +V ++Y G+VV+V  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD V VK+ + D +G+I LS K +
Sbjct: 660 NERVNKVEDVVKEGDEVLVKVTEIDKQGRINLSRKAL 696


>gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           8013]
          Length = 706

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 471/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPARE 701


>gi|229544442|ref|ZP_04433500.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
 gi|229324927|gb|EEN90604.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
          Length = 704

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/697 (45%), Positives = 464/697 (66%), Gaps = 4/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D HT  I+WAGRPL +E G++A+Q++GA L  YGET VL+T    +  K   DFFPLTVN
Sbjct: 4   DKHTYTIDWAGRPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + +P + +M+ +S AL +S +PFEGP+ G  V  ++G++++NP +++ +   + L V+GT
Sbjct: 123 DCTPEMAAMLGSSLALSVSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDIHLTVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A ++ E+V+L+AI+FGH E K +I    K+     KE + ++  +   +L
Sbjct: 183 KDAINMVEAGAKEVPEEVMLEAIMFGHEEIKRLIAFQEKIVAEIGKEKMAVELFELDEEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            E++S M ++ +  +  + EK  R + I  +  ++++ F +E +      ++  +  DI+
Sbjct: 243 VEKVSGMCRKKMIEAIQVHEKKAREEAIRKVGDEVLAQFEAEEADEETVKQVKQILHDIE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++   K+R DGR  + +R +S++VG+L RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KEEVRKLITVDKIRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLGIEESKRFMHHYNFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPDEKEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAG+PI  PVAGIAMGLVK G+ + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGIPIKAPVAGIAMGLVKSGEHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQA++GR+ IL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIAGLSREILEEALQQARKGRMQILDHMMSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S++R  L  + P++  M I PD+IR+VIG  GK I  I+++TG K++I+ DGT+ I+S+ 
Sbjct: 543 SKTRDHLSVYAPKILTMTIHPDKIRDVIGPSGKQINKIIDETGVKIDIEQDGTIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A+++I  I    EV K+Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 EEANNKAKKLIEDIVREVEVGKVYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVRK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVVK GD + VK+ D D  G+I LS K V +   K
Sbjct: 663 VEDVVKIGDEILVKVTDIDSHGRINLSRKAVLKEQQK 699


>gi|259047075|ref|ZP_05737476.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
           ATCC 49175]
 gi|259036125|gb|EEW37380.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
           ATCC 49175]
          Length = 703

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/704 (42%), Positives = 453/704 (64%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +       W GR L++E G++A+Q++GAVL  YG+TVVL   V  +  KD  DFFPLT
Sbjct: 1   MSEKKVFSYNWGGRQLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YA GKIPGG+++RE RP+E+  L +R+IDR IRP+F++ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAAGKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P + +M  +S AL +S +PF+GP+ G  V  +NG+YV+NP  ++ D   ++L V+
Sbjct: 120 DPNCPPEMAAMFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQKDNSDIELSVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT  A+ MVE  A +++E+ +L A++FGH E K ++    ++ +   KE + +    F  
Sbjct: 180 GTATAINMVESSAKEVNEEDMLGALLFGHEEIKKLVAFQEEIVREVGKEKMEVTLLSFDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EIVS 293
            +E ++  +  + +  +    EK  R   I+ +K+  + +F +     +E      ++  
Sbjct: 240 AIEAQVKDLFSQAMVHAIQTQEKLAREANIEKVKETAIEHFEAVLEENDEKAGLLKQVSQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ++++   VR ++ ++KVR DGR  + +R +S+++ LL R HGS LF RG TQA+   T
Sbjct: 300 LVDNLEKDEVRRLITEEKVRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G V R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEYQVIDGLGIEEGKRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSS A++C  +LALM AGVPI  PVAGIAMGL+ DG ++
Sbjct: 420 PSPEDFPYTIRLVSEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R  IL 
Sbjct: 480 TVLTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILREALTQAKKARFEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++E R +L  + P++E+++I PD+I+ VIG GG+ I  I+++TG K++ID +G V
Sbjct: 540 ELTSTIAEPRKELSPYAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVKIDIDQEGHV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+  A I+ A+E+I  +T   EV ++Y+G V ++  FGAFV     +DGLVHIS+L+
Sbjct: 600 SIASTDAAMIQRAKEIIEDLTREIEVGQVYEGTVRRIEKFGAFVEIAKGKDGLVHISELA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV K  DV+  GD V VK+++ D +G+I LS KV+     K 
Sbjct: 660 HERVGKVEDVLALGDKVTVKVIEIDGQGRINLSRKVLLPKEDKE 703


>gi|326803908|ref|YP_004321726.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651013|gb|AEA01196.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 706

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/706 (43%), Positives = 456/706 (64%), Gaps = 10/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    ++ WAGRPL++E G++A+Q++ A L  YG+TVVL  VV  +  K+GQDFFPLT
Sbjct: 1   MSEKQVFKMNWAGRPLQIEVGQLAKQANAAALVRYGDTVVLTAVVGAKEAKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YA GKIPGG+++RE RPTE+  L +R+IDR IRP+F + +KNE QVI  VM  
Sbjct: 61  VNYEEKQYAAGKIPGGFIKREGRPTEHATLTARLIDRPIRPMFPEGFKNEVQVINTVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + SP + +M+ +S AL +S +PF+GP+ G  V  ++G  V+NP LD+  Q  L+L V+
Sbjct: 121 DNDCSPEMAAMLGSSVALTISDIPFDGPIAGVNVGRVDGNLVINPTLDQQAQSDLELTVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GTQ A+ MVE  A +LSE+ +L+A++FGH   K +     ++ +   +E +  +++ F  
Sbjct: 181 GTQTAINMVESSAQELSEEEMLEALMFGHANIKELCYFQEEIRQAVGQEKMPFEAEAFVP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
           + E E+     + +  +  I +K  R + +  +K +M+ ++ S+     +      +IV+
Sbjct: 241 ETEAEVYTRYHQKMVDAIQIFDKLEREEGVQAVKDEMIEFYDSQFLDDEDFVAKHNQIVA 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + + ++   VR ++ + KVR DGR  + +R +S++VGLL R HGS LF RG TQ +   T
Sbjct: 301 LADKLEYDEVRRLITEDKVRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQVLSACT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D +S      F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 361 LAPLSEYQPLDGISPETERHFIHHYNFPQYSVGSTGRYGSPGRREIGHGELGHRALQRVI 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGL+ D +D 
Sbjct: 421 PSQEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDQEDN 480

Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E+I+  +L QAK  R+ 
Sbjct: 481 NKYTILTDIQGLEDHLGDMDFKVAGTRQGITALQMDIKIKGITEDILRESLAQAKVARMQ 540

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +L+ +   L   R  L  + P+++++ I P++I  VIG GG+ I  I+E TG K++IDDD
Sbjct: 541 LLDHLQGTLDAPRDHLSPYAPKIKMIQIKPEKIGEVIGKGGETIDKIIEATGVKIDIDDD 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V I+SS    I+ A E+I  +T   EV +++ G V ++  FGAFV     ++G+VHIS
Sbjct: 601 GQVSISSSDENMIDKAIEIIEELTLEIEVGQVFTGTVTRIEKFGAFVQLTPKQNGMVHIS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +L  +R  K  DVV+ GD V VK+++ D+RG+I LSMK +     +
Sbjct: 661 ELQHKRTNKVEDVVQIGDQVKVKVIEVDNRGRINLSMKALTDKDAE 706


>gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
 gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
          Length = 692

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/688 (44%), Positives = 449/688 (65%), Gaps = 3/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E E AGRP ++E G +A+ + G+ +  YGET VLA     +  ++G DFFPL+V+Y
Sbjct: 1   MRIFETEIAGRPFRVEIGEVAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+L+RE RP+E  IL SR+IDR IRPLF K ++N+ QV+  VM  + +
Sbjct: 61  EEKQYAVGKIPGGFLKREGRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           ++P + +M+ AS AL +S +PF+GP     V  I+G+++LNP   + +   L L V+GT+
Sbjct: 121 NAPEIAAMIGASIALSISDIPFDGPTGSVAVGLIDGEFILNPTEAQREVSDLSLTVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           DA++MVE  AN++SE+ +L+AI+F H E K ++    ++      E         + +L 
Sbjct: 181 DAIMMVEAGANEVSEETMLEAILFAHEEIKKIVAFQEEIVAAVGVEKKDYTLYLPTDELT 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E+   +   +  +    +K  R + ID +K ++V +F   +      +I ++   +Q K
Sbjct: 241 AEVEAFVGGKMHEAVHTEDKTERLENIDAVKTEVVEHFGELYPEQ-LNDIDTILTALQKK 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR+++L  ++R D R  + VR I+A++  + R HGS LF RG+TQ + + TLG   D Q
Sbjct: 300 EVRSLILVDRIRPDNRKMDEVRPITAKIDYIPRVHGSGLFTRGETQVLSIATLGVLRDAQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D LS      +M  YNF   + GE   M +P RREIGHG LA RA+ P++P   +FPY
Sbjct: 360 VLDGLSNDTEKRYMHQYNFPGYSVGEARPMRSPGRREIGHGALAERALLPMIPPEEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+  S+GS+S A+VCGSSLALM AGVP+ KPVAG+AMGL+K+ +   IL+DI G
Sbjct: 420 AIRVVSEVLSSNGSTSQASVCGSSLALMAAGVPLKKPVAGVAMGLIKEDEKLAILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI GI   I+  AL+QA+ GR+HIL  M++ +SE
Sbjct: 480 MEDFLGDMDFKVAGTKDGITAIQMDIKIHGIDREILTQALEQARIGRMHILGIMNEEISE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PR+  M I PD+IR+VIG GGKVI  I+E+TG K++I+DDGT+ IAS    
Sbjct: 540 PRAELSPYAPRIMTMTINPDKIRDVIGSGGKVINKIIEETGVKIDIEDDGTIYIASEDGV 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+ +I  I    EV ++Y G+VV++M+FGAFV   G +DGL+HIS+L+ ERV    
Sbjct: 600 AADKAKAIIEDIVKEVEVGEVYTGEVVRIMNFGAFVSLPGGKDGLIHISKLAKERVKSVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           DVVK GD V VK+++ DD+G+I LS K 
Sbjct: 660 DVVKLGDVVTVKVVEIDDKGRINLSRKA 687


>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
           ST-640]
 gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           lactamica 020-06]
          Length = 706

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 701


>gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3]
 gi|187611298|sp|A0KU01|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3]
          Length = 699

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/692 (48%), Positives = 474/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + + + S L+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+ AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +   ++ 
Sbjct: 181 TESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ ++ L  +  I  K  R  Q+  +K        + +   +  E+  +   ++
Sbjct: 241 LVAQVKELAEDGLAQAYQIQVKQDRYAQVAVVKAAAKEALLAANPDVDLREVDGLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  ++  + R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GDATREAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQ 692


>gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp.
           Y412MC61]
 gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
 gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC61]
 gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
          Length = 723

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/695 (46%), Positives = 467/695 (67%), Gaps = 4/695 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGRPL +ETG +A+Q++GA L  YG+TVVL+T    R  K   DFFPLTVN
Sbjct: 4   EKRVFSIDVAGRPLIVETGELAKQANGAALVRYGDTVVLSTATASREAK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL+SR+IDR IRPLF++ ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + +P V +++ +S AL +S +PFEGP+ G  V  ++GQ+V+NP +++ +   L L V+GT
Sbjct: 123 DCAPEVAALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + +   +    L
Sbjct: 183 KDAINMVEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPAL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
           E E+ Q+ + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   + 
Sbjct: 243 EAEIRQLAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  AL QA++GRL IL+ M + L
Sbjct: 483 QGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE R +L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S  
Sbjct: 543 SEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+  RV K
Sbjct: 603 EAANQKAKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             DVV  GD + VK+ + D +G++ LS K V ++ 
Sbjct: 663 VEDVVSIGDEILVKVTEIDKQGRVNLSRKAVLRDA 697


>gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|75434649|sp|Q5GXV3|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123739068|sp|Q2P0X5|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704832|sp|B2SVJ9|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 704

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/698 (50%), Positives = 484/698 (69%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + + + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++LA     +P    +   +  + 
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELAVEAGTKPSDWVAPAKNDGMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + + + L  +  + +K  R   I  +KK ++   +       W  G++   F +++
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
 gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
          Length = 707

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 661 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 702


>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
 gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 723

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/697 (48%), Positives = 482/697 (69%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  +S K GQDFFPLT
Sbjct: 3   MFNKVVKEFQWGQHKVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + N+ QV+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++ ASAAL +SG+PF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQIATSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EANQLSEDV+L A+++GH + +  I AI +L +   K       +    
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQTAINAIHELVREGGKPEWDWAPAAKNE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  +++++    L+ +  + +K  R +++ ++   + +  +      ++ E+ ++  D+
Sbjct: 243 PLIAKVTEVALPLLQEAYQLRQKSARSQKLKEVSANVAAALAEAGVEADKVEVGNIMFDL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 303 EAKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L+G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 363 DEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 423 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGTD+GITA+QMD+K+ GI++ IM +AL QAK GRLHIL+ M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSNMQEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  M I PD+IR VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 543 MGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS++  ERV 
Sbjct: 603 STEGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVK 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              D +KEG  V VKL+  D++G+++LS+K      G
Sbjct: 663 DIKDWLKEGQQVRVKLIQADEKGRLRLSLKAALAEEG 699


>gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii
           SP-6]
 gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii
           SP-6]
          Length = 767

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/696 (47%), Positives = 482/696 (69%), Gaps = 2/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W    + LETG I+RQ+ GAV+    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 3   LFNKVTKTFQWGQHTVTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E E+L SR+IDR +RPLF + + NE  V+++V+  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E+S  + +++ +SAAL +SG+PF GPV  A+V Y+NG+YVLNP   + + S +DL V+
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA+QL+E+V+L A+++GH + K  I AI++L +   K          ++
Sbjct: 183 GTEAAVLMVESEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRDAGKPAWDWQPPARNE 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++++     +  +  I  K  R         ++    +     ++  ++ ++  ++
Sbjct: 243 PLIAKVAEFGLAKIEAAYQIRNKQARTHACRAAYAEVKISLAEAGVVFDNVDVDNLLFEL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK VR  +L  + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT +
Sbjct: 303 EAKTVRGQILQGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTDQ 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G  R+ F+ HYN  P ATGEV RMG   RRE GHGRLA+RA+ P+LP   +
Sbjct: 363 DSQRIDALAGDFRDSFLFHYNMPPFATGEVGRMGTTKRRETGHGRLAKRALVPLLPPKDE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LA+MDAGVP+   VAGIAMGL+K+G+ F +L+D
Sbjct: 423 FGYTIRVVSEITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTAGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +  ++  F PR+  M I P++IR+VIG GG VIR + E+TG +++I +DGT+ IAS+
Sbjct: 543 MGTANTEVSNFAPRLYTMKINPEKIRDVIGKGGSVIRALTEETGCQIDIGEDGTITIAST 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + E A++ I  IT   E+ K+Y+G VVK++DFGA ++    +DGL+HISQ++ +RV 
Sbjct: 603 DADKAELAKKRIADITAEAEIGKVYEGPVVKILDFGALINILPGKDGLLHISQIAHQRVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K +D + EG  V VK+L+ D++G+IKLSMK + +  
Sbjct: 663 KVTDFLTEGQVVKVKVLETDEKGRIKLSMKALIERP 698


>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
 gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
          Length = 707

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/702 (47%), Positives = 475/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 2   MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA+ LSE+V+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 661 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 702


>gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0070_08D07]
          Length = 695

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/692 (50%), Positives = 485/692 (70%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +       +    + +ET +IA+Q+ G  L + G TVV+ TVV  +S + GQDFFPLTV
Sbjct: 1   MNPIKKTFVYGHDEVVIETNKIAKQTSGTALVSIGGTVVMTTVVGAKSARPGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+ YA GKIPGG+ RRE RP+E E L SR+IDR IRPLF K + NE QV+  V+  D
Sbjct: 61  NYQEKAYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKSFMNEVQVVCTVLSTD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            +  P + +M+  SAAL +SGLPFEGP+  A+V Y +G Y+LNP  +  + G L++ V+G
Sbjct: 121 KDQDPDIAAMIGTSAALAISGLPFEGPIGAARVGYKDGAYLLNPGYEALKDGDLNMMVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSK 239
           T++AVLMVE EA +LSED +L A+++GH E + VI +I + A     +E +    ++ S+
Sbjct: 181 TEEAVLMVESEAKELSEDQMLGAVLYGHQEMQVVISSIKEFAADLGVQESVWAPPQENSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
               +++++  +L  +  I +K  R   +  LK+K+++   S+ +  +EG+++S F  ++
Sbjct: 241 SVVRVNEIVNTELGEAYKIVDKLERQNAVQSLKEKLLASALSDDNGLSEGDLLSAFSKLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  +L+ + R+DGRD +TVR I  +VG+L +THGS+LF RG+TQA+VV TLGT  D
Sbjct: 301 KSLVRERVLNGEPRIDGRDLKTVRAIEVEVGVLPKTHGSALFTRGETQALVVATLGTLRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
              +D+L GT ++ FM+HYNF P + GE   MG P RRE+GHG+LARR +  VLP   +F
Sbjct: 361 AAIIDALEGTYKDQFMLHYNFPPYSVGETGMMGGPKRREVGHGKLARRGVSAVLPDPDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYTLR+VSEITES+GSSSMA+VCG+SLALMDAGVP++ PVAG+AMGLVK+G+ + +L+DI
Sbjct: 421 PYTLRVVSEITESNGSSSMASVCGTSLALMDAGVPLAAPVAGVAMGLVKEGNRYAVLTDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+E IM +AL QA   RLHIL +M+KV+
Sbjct: 481 LGDEDHLGDMDFKVAGSSKGVTALQMDIKISGITEEIMEVALSQAYEARLHILEQMNKVI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+SR  L E  P +E M + PD+IR++IG GG  IR IVE+TGA+V+IDDDG V+I + +
Sbjct: 541 SQSRESLSENAPSMETMKVHPDKIRDIIGKGGATIRSIVEETGAEVDIDDDGLVRIYAEN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  +AA   I  IT   EV KIY G+V +++DFGAFV     +DGL+HISQ++ ERV  
Sbjct: 601 GASKDAAVNKIEEITAEAEVGKIYDGKVARIVDFGAFVTILPGKDGLLHISQIADERVES 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            +D + EG  V V +LD D RG+IKLS+K V+
Sbjct: 661 VTDYLSEGQKVEVVVLDLDQRGRIKLSIKEVE 692


>gi|289550934|ref|YP_003471838.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 698

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/696 (45%), Positives = 463/696 (66%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP L++ +Q  LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH+E K ++E   ++           I  +    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHDEIKRLVEFQQQIVDHLQPVKSEFIPVERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
              +  + +E  L+ +    +K  R   +D+LK ++ + F  E    NE    E+ ++  
Sbjct: 243 VSRVQALTEEKGLKETVLTFDKKQRDDNLDELKAEIAAEFIDEADPENELLINEVHAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VG+L R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIADEKIRPDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   Q   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQIIDGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 SKFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L  + P+VEIM I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDHPRAELSAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIYIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I  ++E+I +IT   EV +IY  +V ++  +GAFV     +D L+HISQ+S +R
Sbjct: 603 AVDQAMINRSKEIIEAITREAEVGQIYDAKVKRIEKYGAFVEIFSGKDALLHISQISKDR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GDT+ VK+ + D +G++  S KV+ +
Sbjct: 663 INKVEDVLKIGDTIKVKITEIDKQGRVNASHKVLVE 698


>gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM
           9187]
 gi|259534170|sp|C4L8X0|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM
           9187]
          Length = 720

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/695 (47%), Positives = 477/695 (68%), Gaps = 2/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +       +    + +ETG +ARQ+  AV+ +  +T VL TVV  +   +G+DFFPLTV
Sbjct: 1   MNPIVKTFPYGQHTVTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA G+IPGG+ +RE RP+E E L +R+IDR IRPLF + + NE QV+  VM  +
Sbjct: 61  NYQERTYAAGRIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
              SP +V+M+  SAAL +SG+PF GP+  A+V YIN QY+LNP + +  +  LDL V+G
Sbjct: 121 PAVSPDIVAMIGTSAALAISGIPFNGPIGAARVGYINDQYILNPSVVELQESKLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T  AVLMVE EA  L E+V+L A+++GH++ + VI+A+++ A     +P    +   +  
Sbjct: 181 TAAAVLMVESEAAILPEEVMLGAVVYGHDQLQTVIKAVNEFAAEVGTKPWNWVAPAANVT 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++    +  +  I EK VR   I  LK+++V+   +   + + GE+  +F +++
Sbjct: 241 LKAKIAELAVAAIGEAYRITEKAVRYDAISALKQRIVAEIVAADETQDAGEVADLFHELE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + VVR  +L  + R+DGRD + +R +S   G+L R HGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 SDVVRGRILRGEPRIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D ++G + + FM+HYNF P   GE   MG+P RREIGHGRLARR +  V+P  A+F
Sbjct: 361 AQTIDEITGERTDRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLARRGVSAVIPSQAEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD F++LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDSFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA+  RLHIL  M K +
Sbjct: 481 LGDEDHLGDMDFKVAGTSEGVTALQMDIKIEGITKEIMQIALKQARDARLHILTVMDKAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             +R  + +F PR+  + I P++I++VIG GG VIR + E+TG  + ++DDGTVKIA+ S
Sbjct: 541 GVARDDISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIELEDDGTVKIAAVS 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I+++T   E+ +IY+G+V ++ +FGAFV+    +DGLVHISQ++ ERV  
Sbjct: 601 GEAAQEAIRRIQALTADVEIGRIYEGKVTRLAEFGAFVNILPGKDGLVHISQITDERVKD 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            SD +K GD V  K+L+ D +G+I+LS+K   ++ 
Sbjct: 661 VSDYLKVGDMVRTKVLEVDRQGRIRLSIKEAKRDE 695


>gi|329122064|ref|ZP_08250672.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327466871|gb|EGF12387.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 697

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/695 (42%), Positives = 468/695 (67%), Gaps = 5/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T ++E AGRPL +ETG++A+Q+ G+VL  YG+TVVL    + +  ++G DFFPLT
Sbjct: 1   MFE--TFQMELAGRPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGK+PGG+LRRE RP  + +L +R+IDR IRPLF K  +++  V+  V+  
Sbjct: 59  VDYEEKMYSVGKMPGGFLRREGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D +++P +  ++ ASA++ +S +P++GPV G +V  ++G++V+NP  ++ +  ++++ V+
Sbjct: 119 DYDNAPELCGLLGASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERSTMNITVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           G++ A+LMVE  A + SE+ VLDAI++ H   K ++E   K+ +   K+   +  S+   
Sbjct: 179 GSETAILMVEGGAKEASEEEVLDAIMYAHTVIKQLVEFQKKIIEKVGKQKKELVFSEIPE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+ + +  + +LR + F P+K  R   +++++K+  ++F   +   NE ++++  + +
Sbjct: 239 EIEKAIYEYAENNLREAIFNPDKLTREAHMEEVRKEAENHFKEIYPD-NESDVITCLDHL 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
              +VR ++   K+R DGR  + +R I+ +VG++ RTHGS+LF RG TQA+ + TL    
Sbjct: 298 TKSIVRKMISVDKIRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMN 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D L+      ++  YNF     GE      P RREIGHG LA RA+ PV+P   +
Sbjct: 358 ETQIIDDLTLVNEKRYIHQYNFPSYCVGETKSSRGPGRREIGHGALAERALEPVIPSVDE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEI ES+GSSS A+VCGS+++LM+AGVPI  PVAGIAMGLV +G+ F IL+D
Sbjct: 418 FPYAIRVVSEILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGEHFTILTD 477

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI G+S  I++ AL+QA +GR+ IL ++++ 
Sbjct: 478 IQGMEDALGDMDFKVAGTAKGITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKIAEC 537

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S+    L  + P++  + IP D+IR+VIG GGK I  I+ +TG K+++++DG V IAS 
Sbjct: 538 ISKPAEHLSPYAPKIITLRIPVDKIRDVIGAGGKTINKIITETGVKIDVEEDGRVYIASV 597

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A++M+ S+T   +  ++Y G+V ++M FG FV     ++G+VHISQL+ +RV 
Sbjct: 598 DEEAAQKAKKMVESLTHEVKPGEVYLGKVTRLMKFGVFVEILPGQEGMVHISQLALKRVE 657

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  DVV EGD + VK+++ DD+G+I LS K + Q 
Sbjct: 658 KVEDVVHEGDEIMVKVMEIDDKGRINLSRKALLQE 692


>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           haemolyticus JCSC1435]
 gi|117940134|sp|Q4L5X7|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 700

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/697 (44%), Positives = 459/697 (65%), Gaps = 7/697 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +E G++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIEIGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP +   L +R+IDR IRPLF K Y+++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP ++E +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH+E K ++    ++       +   +  +    L
Sbjct: 183 KDAVNMVEAGASEITEKEMLEAIFFGHDEIKRLVAFQEEVVAHIQPVKKEFVPVERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
              +  + +E  L+ +    +K  R + +D LK ++ + F  E    NE    E+ ++  
Sbjct: 243 VSRVKTLTEEKGLKETVLTFDKQQRDENLDTLKAEIATEFVDEADPENELLIDEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   Q   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 TEFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+VEIM I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDQPRKELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I  ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+S ER
Sbjct: 603 AIDQDMINRAREIIEDITREAEVGQVYNAKVKRIEKYGAFVELFAGKDALLHISQISKER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           + K  DV+  GD++ VK+ + D +G++  S K +D+N
Sbjct: 663 INKVEDVLSIGDSIDVKITEIDKQGRVNASHKALDEN 699


>gi|73662800|ref|YP_301581.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|117940130|sp|Q49X62|PNP_STAS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72495315|dbj|BAE18636.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 697

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/694 (44%), Positives = 459/694 (66%), Gaps = 7/694 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWA R L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPL VN
Sbjct: 4   EKKVFKTEWANRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLMVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP++   L +R+IDR IRPLF K YK + Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G +V YI+G+YV+NP + + +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVKVGYIDGEYVINPTVAQKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH+E + ++    ++      K+   +  +    L
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHSEIQRLVNFQQEIVDHIQPKKKAFVPVEKDEVL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E++ Q+ +E+ L+ +    +K  R   +D LK+K+ + F  E  + NE    E+ S+  
Sbjct: 243 VEKVKQLTQENGLKDAVLTFDKQQRDINLDALKEKVAAEFIDEEDADNEVLIKEVNSILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ ++K+R DGR ++ +R + ++VG+L R HGS LF RG TQA+ V+TLG+
Sbjct: 303 DLVKEEVRRLIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGS 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L   ++  FM HYNF   + GE   + +P RREIGHG L  RA+  ++P  
Sbjct: 363 MSEYQILDGLGEEEQKRFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIPDL 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 KDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G+++ I+  AL QA+ GRL IL+ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTAEGITAIQMDIKIDGLTKEIIKEALDQAREGRLAILDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +  SR +L  F P+V  M I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDTSRSELSAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I  AR +I  IT   EV ++Y+G+V ++  +GAFV     +D LVHISQ++ ER
Sbjct: 603 AVDKDAIARARSIIEDITREAEVGQVYEGKVKRIEKYGAFVELFPGKDALVHISQIANER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + K  DV+K GD   +K+ + D +G++  S K +
Sbjct: 663 IDKVEDVLKVGDIFKIKVTEIDKQGRVNASHKAL 696


>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 706

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/702 (48%), Positives = 474/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ AS AL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASTALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  LSEDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILSEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKGALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVRT +L+ + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP   
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ D + F +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV   SD ++ G  V VK L+ DDRG+++LS+K + +   + 
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSIKALVEAPARE 701


>gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR]
 gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
          Length = 735

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/701 (44%), Positives = 460/701 (65%), Gaps = 15/701 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V        GR + +ETGR+A+Q+ GAV   YG+T VL T       ++G DFFPLTV+Y
Sbjct: 25  VIIRSFPIGGREMVIETGRMAKQATGAVFCRYGDTAVLVTATCSPEPREGIDFFPLTVDY 84

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF K Y+N+  ++  V+  D +
Sbjct: 85  EERLYAVGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQD 144

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           ++P V ++  ASAALM+SG+PF GP+    V  ++G++++NP + + +   + L V+GT+
Sbjct: 145 NAPDVTAINGASAALMISGIPFLGPIGAVVVGRVDGKFIINPTIAQAEVSDMHLTVAGTK 204

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF----- 237
           DAV+MVE  A ++ E+V+L+AI +GH E K ++  +    + C    +    ++      
Sbjct: 205 DAVIMVEAGAKEVPEEVILEAISYGHEEIKKIVSFLEDFTRECLDAGVAKPRQEPVLFLL 264

Query: 238 -SKLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE- 290
             ++E+++ +   + +  +          K  R   I++ K+++ +YF+ +    +E   
Sbjct: 265 DEEIEKQVREYAYDKMFDTLKECIEKRFPKKQREDFIENAKEEIKTYFAEKVFPEDEAAL 324

Query: 291 --IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             +      ++ +++R  ++  ++R+DGR  + VR I   VG+L RTHGS LF RG TQ 
Sbjct: 325 KHVADAVNKLEKEIMRKFIIQDRIRIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQV 384

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TLG   DEQ +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA
Sbjct: 385 LTVTTLGAVGDEQILDGLGVEESKRYMHHYNFPPYSVGEARFMRGPGRREIGHGALAERA 444

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + P++P   +FPYT+R+VSE+ ES+GSSSM +VCGS+L+LMDAGVPI +PV+G+AMGL+K
Sbjct: 445 LEPMIPSEDEFPYTIRLVSEVLESNGSSSMGSVCGSTLSLMDAGVPIKRPVSGVAMGLIK 504

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + D F +L+DI G EDHLG MDFKVAGT+ G+TA+QMD+KI GIS+ I+ +AL QA+ GR
Sbjct: 505 EEDAFAVLTDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKIAGISKEILQVALTQAREGR 564

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           +HIL++M +V+ + R ++  + PR+    I P++IRNVIG GGK I+ I+++TG K++I+
Sbjct: 565 MHILSKMLEVIDKPRPEISPYAPRIITFTIDPEKIRNVIGPGGKTIKKIIDETGVKIDIE 624

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDG V IA+  +     ARE+I  +T   EV K+Y G+VVK+MDFGAFV     ++GLVH
Sbjct: 625 DDGRVFIAAVDVEAGRRAREIIDKLTADVEVGKMYLGRVVKIMDFGAFVEVLPGKEGLVH 684

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           ISQL+ +RV K  DVV  GD + VK+   D++G+I LS K 
Sbjct: 685 ISQLAEQRVGKVEDVVSVGDEIMVKVTKIDEQGRINLSRKE 725


>gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 721

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/698 (44%), Positives = 465/698 (66%), Gaps = 3/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   +++ AGR L +ETGRIA+Q+ G+V+  YG+TVVL+T       ++G DFFP+TV+Y
Sbjct: 1   MKVYKMQLAGRELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE RPTE  IL +R+ DR  RPLF K ++N   ++  V+  D +
Sbjct: 61  EERLYAVGKIPGGFIKREGRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTTVLSVDQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+S+V ASAAL +S +PF GP+    V +I+G+ V+NP  ++ +Q  L L V+ T+
Sbjct: 121 NPPEVLSIVGASAALSISNIPFAGPLSAVVVGWIDGKPVINPNQEQAEQSKLHLVVASTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           D ++MVE  A++L+ED VL+AI+ G +  K ++    ++     +E + ++  +  +++ 
Sbjct: 181 DGIMMVEAGAHELTEDEVLEAIMAGDDANKEIVALQEQMVAEVGQEKMQVNVFQPDAEVA 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++ Q   + +  +    EK+ R   I + KK+ + +F+      NE ++   FE++  +
Sbjct: 241 EQVRQFCSDKVAQAVRTIEKHARETAISEAKKETIEHFAEIFPE-NEKDVKVAFENLVKE 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +RT++L + +R DGR S+ +R ++++VG+L RTHGS LF RG TQ + V TLG   + Q
Sbjct: 300 TMRTMILKENLRPDGRKSDEIRPVTSEVGILPRTHGSGLFTRGQTQVLNVCTLGAPGEVQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M HYNF P + GE   M   SRR+IGHG LA +A+ PVLP    FPY
Sbjct: 360 RLDGLGLEESKRYMHHYNFPPYSVGEAGFMRGASRRDIGHGALAEKALVPVLPSEEDFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSM +VCGS+L++MDAGVP+ KPV+G+AMGL+ +GDD  ILSDI G
Sbjct: 420 TIRLVSEVVESNGSSSMGSVCGSTLSMMDAGVPLKKPVSGVAMGLIVEGDDVAILSDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+KI G+S  I+  ALQQAK G +HI+N+M++V+ E
Sbjct: 480 MEDFLGDMDFKVAGTPEGITALQMDIKIKGLSREILTKALQQAKDGYMHIMNKMTEVIPE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L    PR+  + I PD+IR+VIG GGK+I  IV +T A ++I+ DGT+ IA+ S  
Sbjct: 540 PRKELSPHAPRIMTININPDKIRDVIGPGGKMINKIVAETDADIDIEPDGTIYIAAVSPE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A EMI S+T   +  ++Y G+V +V  +GAFV     +DGLVHIS+L+ ERV KT 
Sbjct: 600 SGKKALEMIESLTKEVQPGEVYTGKVTRVEKYGAFVEILPGKDGLVHISRLAHERVEKTE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           DVV  GD + VK++  DDRG+I LS +    N    +V
Sbjct: 660 DVVNIGDEIPVKVIGIDDRGRIDLSRRAAIPNAQGEMV 697


>gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7]
 gi|123131654|sp|Q0HXR0|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7]
          Length = 699

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/692 (48%), Positives = 473/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +   S L+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+ AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +   ++ 
Sbjct: 181 TEGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  L  +  I  K  R  Q+  +K        + +   +  E+  +   ++
Sbjct: 241 LVAQVKELAEAGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  ++  + R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQ 692


>gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus
           VCS1703A]
 gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus
           VCS1703A]
          Length = 693

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/690 (50%), Positives = 479/690 (69%), Gaps = 4/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H+V   +    + LETG IARQ+DGAV+    +T+VL TVV ++++ +GQDFFPLTV+Y
Sbjct: 2   KHSVSFTYGQHQVTLETGEIARQADGAVIVNMDDTIVLVTVVANKTVAEGQDFFPLTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA GKIPGG+ +RE RP+E E LISR+IDR IRPLF+  + NE Q+I  V+ ++ E
Sbjct: 62  QEKNYAAGKIPGGFFKREGRPSEEETLISRLIDRPIRPLFADGFLNEVQIIATVLSYNPE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP + S++ ASAAL LSGLPF GP+  A+V Y+N  YVLNP     + S LDL V+GT+
Sbjct: 122 VSPDIPSIIGASAALKLSGLPFNGPIAAARVGYVNDAYVLNPSPKALKNSRLDLVVAGTE 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AVLMVE EA+QLSE V+L+A++FGH + + VI++I++LA   AK      S    + L+
Sbjct: 182 SAVLMVESEADQLSEAVMLEAVMFGHRQQQVVIKSINELAAQAAKPAWAWQSPARDEQLD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQ 299
            E+    +E L  +  I  K  R + +  +    V+    ++++  W E  +      + 
Sbjct: 242 TEVKNHFEERLVAAYQIAHKQTRQETVAQIHADAVALLGIQNNAHGWEETLVNEYVHHLA 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L K+ R+DGRD++TVR I+    +L R HGS+LF RG+TQA+VV TLGT  D
Sbjct: 302 YRIVRDRILKKQPRIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+L G  R++FM+HYNFLP + GE+ R+G+P RREIGHGRLARR +  VLP    F
Sbjct: 362 AQLLDTLDGEVRDNFMLHYNFLPFSVGEIGRIGSPKRREIGHGRLARRGLSAVLPLEEDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGL+K+GD+F IL+DI
Sbjct: 422 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+E IM  AL QA  GRLHIL  M++ +
Sbjct: 482 LGDEDHLGDMDFKVAGSATGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR   M I  ++I++VIG GG  IR I EQTG  + I+DDG+VKIA++ 
Sbjct: 542 AAPRAELSDYAPRFSSMRIDTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    AR +I  I   PE+ +IY  +V K+ DFGAF+ F   ++GLVHISQ++  RV  
Sbjct: 602 KAAAANARRLIEEIVAEPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVND 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D + EG  V VKLL+ D +G+++LS+K 
Sbjct: 662 VRDELTEGQEVKVKLLEIDRQGRVRLSIKE 691


>gi|88797627|ref|ZP_01113216.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Reinekea sp. MED297]
 gi|88779799|gb|EAR10985.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Reinekea sp. MED297]
          Length = 706

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/698 (50%), Positives = 490/698 (70%), Gaps = 5/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVN 62
             T   ++    + +ETGR+ARQ+ G+ + T  G+TVVLATVV   S+  GQDFFPL+V+
Sbjct: 6   PKTKSFKFGQHDVTIETGRVARQATGSAICTMNGDTVVLATVVAKDSVSPGQDFFPLSVH 65

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ Y+VG+IPGGYL+RE RP+E E L SR+IDR IRPLF K + NE QVIINV+  + 
Sbjct: 66  YQEKFYSVGRIPGGYLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIINVLSANK 125

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQ-GSLDLFVSG 180
              P + +M+A SAAL +SG+PF GP+  A+V Y + + Y+LNP  ++ +   LD+ V+G
Sbjct: 126 TDDPDIAAMLATSAALAVSGVPFNGPIGAARVGYTDAEGYLLNPTFEQLETSRLDMVVAG 185

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSK 239
           TQDAVLMVE EA +LSED +L A++F H E +  + AI++ A    K         +   
Sbjct: 186 TQDAVLMVESEAQELSEDQMLGAVLFAHQEFQVAVSAIAEFAAEHGKPAWDWAPEAENEA 245

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++S+     +  +  + +K  R   + DL+ + V   ++E    +  ++ S+F  I+
Sbjct: 246 LKTKVSEAYAAKIAEAYQVSDKMQRYAALSDLRAQAVETLATEDGETSADDVASMFGKIE 305

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR  +LD + R+DGRD +TVRDI  +VG+L   HGS+LF RG+TQA+V  TLGT  D
Sbjct: 306 KNTVRQRILDGQPRIDGRDGKTVRDIKVEVGVLPGAHGSALFTRGETQALVTTTLGTLRD 365

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            +  D L+GT  ++FM+HYNF P + GE  R+G   RREIGHGRLA+R +  ++P T  F
Sbjct: 366 GKMEDMLTGTITDNFMLHYNFPPFSVGEAGRIGGVGRREIGHGRLAKRGVLAMMPNTDDF 425

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLA+MDAGVP+ KPVAGIAMGLVK+GD F +L+DI
Sbjct: 426 PYTVRVVSEITESNGSSSMASVCGASLAMMDAGVPVKKPVAGIAMGLVKEGDKFTVLTDI 485

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT++G+TA+QMD+KI GI+E IM +AL QA   RLHIL EM++V+
Sbjct: 486 LGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITEEIMEIALGQAMDARLHILREMAQVI 545

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             +R +L +  P +++M +  D+IR+VIG GG  IR I++QTGA+V+I DDGTV+I +++
Sbjct: 546 GYARPELPDNAPTMDVMKVDQDKIRDVIGKGGATIRSIIDQTGAEVDISDDGTVRIYAAA 605

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               EAAR MI +IT  PE+ ++YKG V ++ DFGAFV F   +DGLVHISQ++ ER+ K
Sbjct: 606 KEGAEAARNMILAITAEPEIGEVYKGTVARLADFGAFVTFLPGKDGLVHISQIAQERIEK 665

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGK 696
            +D + EG+ V VK+LD D RG++KLS+K V D++  K
Sbjct: 666 VADKLSEGEAVVVKVLDVDARGRVKLSIKEVTDEDRAK 703


>gi|257096736|sp|B6ENE6|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 709

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/692 (48%), Positives = 485/692 (70%), Gaps = 3/692 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+A+  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL ++G+PF GP+  A+V +ING+ VLNP   E   S LDL V
Sbjct: 121 INPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           SGT+ AVLMVE EA+ LSE+ +L A++FGH++ + VI+AI++ A   A      ++    
Sbjct: 181 SGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVVN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++++ +  L  +  I EK  R +Q+  +K ++V+    ++ + +E EI  +   
Sbjct: 241 AELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALLVQNEALDEREIRGMLGA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL  M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILTVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + ++ PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV KIY G+V++++DFGAFV   G ++GLVHISQ++ ER+
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            K +D ++ G  V  K+L+ D +G+I+LS+K 
Sbjct: 661 EKVADHLQVGQEVQTKVLEIDRQGRIRLSIKE 692


>gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
 gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
          Length = 696

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/693 (48%), Positives = 475/693 (68%), Gaps = 3/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VHTV+ E  G+ + +ETG+IA+Q+ GAV+   G+T+VL T V  +S K+GQ FFPLTVNY
Sbjct: 2   VHTVQTECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE RP++NE L  R+IDR IRPLF + + N+TQV+  V+  D +
Sbjct: 62  QEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P +++M+ ASAALM+S +PF GP+ G +V  ++G ++ NP  ++++   +++ ++ ++
Sbjct: 122 HDPGILAMIGASAALMVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSDMEIVIAASK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           DA+LMVE  A+++SE+ +L+AI FG    + ++ A  +L    A     I +   +  L+
Sbjct: 182 DAILMVEGSASEVSENDLLEAIFFGKQAVQGILAAQEELVAKVAPVKRNIPAPVVNTDLK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +  + KE++R +  I  K  R   ID +  K V+  + E    +E ++ +  E+++  
Sbjct: 242 ARVDALAKEEMRGAVRIKTKVERHDAIDAITVKTVAALAEEFEG-SEKDVKAFIEELEYD 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  ++    R+DGRD++T+R+I+ +VGLL R HGS+LF RG+TQ+IV  TLGT  DEQ
Sbjct: 301 LVREHIIKDGERIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G  R  F++HYNF P + GE S   AP RREIGHG LA RA+  VLP+   FPY
Sbjct: 361 RIDSLYGDSRKKFLLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+ITES+GSSSMATVCG SL++MDAG+PI  PVAGIAMGL+K+GDDF ILSDI G
Sbjct: 421 TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KIGG++  IM  AL QAK GR+HIL EM+K ++ 
Sbjct: 481 DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRVHILGEMAKTIAT 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           SR  L  F PR+  + +  D+IR+VIG GGK IR + E TG  ++IDD G + IAS++  
Sbjct: 541 SRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVAIDIDDTGKINIASTNKE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MIR++T   E  K+Y G V K+M+FGAFV      DGLVH+S+L TERV   S
Sbjct: 601 ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D++KEGD V VK +  D +GKIKLS K     T
Sbjct: 661 DILKEGDKVLVKCIGIDKQGKIKLSRKEALGQT 693


>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
 gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
          Length = 719

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/692 (48%), Positives = 480/692 (69%), Gaps = 2/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      +W    + +ETG IARQ+ GAVL    +TVVLATVV  R+ K GQDFFPLT
Sbjct: 1   MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+ENE LISR+IDR IRPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGRPSENETLISRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++A SAAL +SGLPF GPV  A+V Y+NG YVLNP   E     L+L V+
Sbjct: 121 NPEVEADIPALLATSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA+QLSE+V+L+A++FGH + +  I AI +L +   K      + +   
Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKDQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + +  +  +D+R +  I +K  R + + +   K+ +  +    + +  ++  +  D+
Sbjct: 241 ALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGVAADAAKVDGILFDM 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR  +L  + R+DGRD+ TVR +S +  +L RTHGS+LF RG+TQA+ V TLGT +
Sbjct: 301 EARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQ 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G  R+ F++HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP+   
Sbjct: 361 DAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSE+TES+GSSSMA+VCG  LAL+DAGVP+   VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+ SG+TA+QMD+KI GI+  IM +AL QA+  R+HIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R ++ +F PR+  + I P++IR+VIG GG  IR + E+TG ++NI +DGT+ IAS+
Sbjct: 541 VGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +   A++ I  +T   EV ++Y G VVK++DFGA V+    +DGL+HISQ++ ER+ 
Sbjct: 601 DADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERIN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K SD ++EG  V VK+++ DD+G+ +LS+K +
Sbjct: 661 KVSDFLQEGQKVRVKVIETDDKGRFRLSIKAL 692


>gi|166712594|ref|ZP_02243801.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 704

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/698 (50%), Positives = 483/698 (69%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P    +   +  + 
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + + + L  +  + +K  R   I  +KK ++   +       W  G++   F +++
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
 gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
          Length = 722

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/691 (46%), Positives = 468/691 (67%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+ AGRPL +ETG +A+Q++GA L  YG+TVVL+T    R  KD  DFFPLTVN
Sbjct: 4   EKRVFSIDVAGRPLVIETGELAKQANGAALVRYGDTVVLSTATASREAKD-VDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF++ ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP V +++ +S AL +S +PFEGP+ G  V  I+GQ+V+NP +++ +   + L V+GT
Sbjct: 123 DCSPEVAALIGSSVALTISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDMHLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+V+L+AI+FGH E K +I    ++A    KE + +   +   +L
Sbjct: 183 KDAINMVEAGADEVPEEVMLEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
           E E+ Q+ + D++ +  +PEK  R   I+D+K  +++ + +E +   +  ++  +   + 
Sbjct: 243 EAEIRQLAEADIKKAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R +S+ VG+L RTHGS LF RG TQ + V TLG   D
Sbjct: 303 KEEVRRLITVEKIRPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   M  P RREIGHG L  RA+ PV+P   +F
Sbjct: 363 VQILDGLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK+ D + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNEDHYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G++ +I+  ALQQA++GRL IL+ M + L
Sbjct: 483 QGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTRDILEEALQQARKGRLEILDHMMQTL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE R +L ++ P++ IM I PD+IR VIG  GK I  I+++TG K++I+ DGT+ I+S  
Sbjct: 543 SEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K
Sbjct: 603 EEANQKAKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEERIGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D+V  GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDIVSIGDEILVKVTEIDKQGRVNLSRKAV 693


>gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU121]
          Length = 699

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/696 (44%), Positives = 458/696 (65%), Gaps = 7/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF GP+ G  V Y++G+YV+NP + E +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFLGPIAGVNVGYVDGKYVINPTVAEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH+E K ++    ++      E    I  +   +L
Sbjct: 183 KDAVNMVEAGASEITESEMLEAIFFGHDEIKRLVAFQQEIIDYIQPEKQEFIPVERDEEL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF---E 296
            E++  + +   L+ +    +K  R   +D LK+ +V+ F  E    NE  I  V+    
Sbjct: 243 VEKVKSLTEAKGLKDTVLTFDKQQRDINLDALKEDIVAEFIDEEDPDNEALIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ D+K+R DGR  + +R + ++VGLL R HGS LF RG TQA+ V+TLG 
Sbjct: 303 DLVKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           + FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 SDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  ++  AL+QA++GRL I++ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + + R +L  + P+V  M I P++IR+VIG GGK I  I+++TG K++I+ DG + I 
Sbjct: 543 QTIDQPRNELSAYAPKVVTMNIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGQIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I+ ARE+I  IT   EV ++Y  +V ++  +GAFV     +D L+HISQ+STER
Sbjct: 603 AVDQEMIDRAREIIEEITREAEVGQVYNAKVKRIEKYGAFVELFPGKDALLHISQISTER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K  DV+K GD++ VK+ + D +G++  S K +++
Sbjct: 663 INKVEDVLKLGDSIEVKVTEIDKQGRVNASHKAINE 698


>gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida
           LFI1238]
 gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 718

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/692 (48%), Positives = 485/692 (70%), Gaps = 3/692 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+A+  +T V  +VV  +    GQDFFPL
Sbjct: 10  MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPL 69

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 70  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 129

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + + +P +++M+A SAAL ++G+PF GP+  A+V +ING+ VLNP   E   S LDL V
Sbjct: 130 INPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVV 189

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           SGT+ AVLMVE EA+ LSE+ +L A++FGH++ + VI+AI++ A   A      ++    
Sbjct: 190 SGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVVN 249

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++++ +  L  +  I EK  R +Q+  +K ++V+    ++ + +E EI  +   
Sbjct: 250 AELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALLVQNEALDEREIRGMLGA 309

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR+ ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 310 LEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 369

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +DSL G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 370 RDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVE 429

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 430 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS 489

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL  M +
Sbjct: 490 DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILTVMDE 549

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + ++ PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 550 AISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA 609

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A   I  IT   EV KIY G+V++++DFGAFV   G ++GLVHISQ++ ER+
Sbjct: 610 TEGAAAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERI 669

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            K +D ++ G  V  K+L+ D +G+I+LS+K 
Sbjct: 670 EKVADHLQVGQEVQTKVLEIDRQGRIRLSIKE 701


>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
 gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
          Length = 705

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/697 (48%), Positives = 475/697 (68%), Gaps = 6/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHIKTFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+N  YVLNP   +  +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA+ L EDV+L A+++GH + + VI+AI++LA     E     + +  +
Sbjct: 181 GTAQAVLMVESEADILPEDVMLGAVVYGHEQMQAVIQAINELADEVNPEVWDWKAPETNA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
           +L  ++  +    +  +  I +K  R  ++D+    + +   +E +    + EI  +F+ 
Sbjct: 241 ELVAKVKDISGSLIAEAFKIRQKQARTAKLDEAWAAVEAALINEETDTLAKNEIKGIFKQ 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +L  + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + + F +L+
Sbjct: 421 DFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMQA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S    +L +  PR+  M I PD+IR VIG GG+ IR I  +T  ++NI +DGT+ IA+
Sbjct: 541 AVSGP-QELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETNTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    EAA+  I +IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTAEAGEAAKARIETITAEVEVGKVYEGTVVKLLDNNVGAIVTIMPGKDGLVHISQITHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           RV   SD ++ G TV VK L+ D+RG+++LSMK + +
Sbjct: 660 RVKNVSDYLQVGQTVQVKALEVDERGRVRLSMKALTE 696


>gi|330813312|ref|YP_004357551.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327486407|gb|AEA80812.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 695

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/695 (55%), Positives = 507/695 (72%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   EI W  + L LETGR+ARQ+DGAV+ T GETV+LAT V  +  K   DFFPLT
Sbjct: 1   MFNITKKEITWGDKKLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE+RPTE E LISR+IDR IRPLF   ++NETQV+  V+ +
Sbjct: 61  VNYQEKYYAAGKIPGGYFKREARPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P  ++++A+SAAL +SG+PF GPV  A+V  I+G++VLNP  ++     L+L V+
Sbjct: 121 DKENDPEALALIASSAALAISGIPFMGPVAAAKVGMIDGEFVLNPTKEQIKDSQLELIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLMVE EA+ LSE  +LDA+ FGH++ K VI  I   AK   KE   I+ KD+S+
Sbjct: 181 GTEDAVLMVESEASGLSEKQMLDAVKFGHDKAKEVINLIKDFAKEAGKERWKIEEKDYSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+E++S  + +DL+ +    +K +R   I   K K+ + F  +  ++++ EI   F+ ++
Sbjct: 241 LKEKISSAVADDLQKAFDESDKQIRTGLIAAAKDKVTAMFEGDE-TYSKVEIGDQFKSVE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K+VRT +L    R+D R    VRDI  +VG+L + HGSSLF RG+TQA+VV TLGT +D
Sbjct: 300 KKIVRTQILKDSKRIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +++L G +R+ FM+HYNF P + GEV R+G   RREIGHG+LA RAI+  LP   +F
Sbjct: 360 EQRLETLDGAERSRFMLHYNFPPYSVGEVGRIG-TGRREIGHGKLAWRAINSSLPSKEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT RIVSEITES+GSSSMATVCG+SLALMDAGVPI  P+AGIAMGL+K+GDD+ ILSDI
Sbjct: 419 PYTFRIVSEITESNGSSSMATVCGASLALMDAGVPIKTPIAGIAMGLIKEGDDYSILSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GIT++QMD+KI GI+ +IM  AL QAK GR+HIL EM+K L
Sbjct: 479 LGDEDHLGDMDFKVAGTKDGITSLQMDIKITGITFDIMEKALDQAKEGRIHILGEMAKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +ESR +L + TP++E + +    I  VIG GG  IR IVE +GAK++I+DDG V IA++ 
Sbjct: 539 TESRKELSKNTPKMERIQVDKKDIAAVIGKGGATIREIVELSGAKLDINDDGMVTIAAAD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A +M++ I   PE+ KIYKG+VVK+M+FGAFV+F G +DGLVHISQL+ +RV  
Sbjct: 599 EESRMKAVQMVKDIVAKPEMGKIYKGKVVKIMEFGAFVNFLGKQDGLVHISQLAAKRVEN 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            SDVVKEGD V VK++ FD RGK+KLSMK V ++T
Sbjct: 659 VSDVVKEGDEVSVKVVGFD-RGKVKLSMKEVTEDT 692


>gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
           ATCC 700633]
 gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
           ATCC 700633]
          Length = 701

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/702 (42%), Positives = 457/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EW GR L++E G++A+Q++GAVL  YG+TVVL   V  +  KD  DFFPLT
Sbjct: 1   MSEKKVYSYEWGGRLLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGTKQAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YA GKIPGG+++RE RP+E+  L +R+IDR IRP+F++ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAAGKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P + +M  +S AL +S +PF+GP+ G  V  +NG+YV+NP  ++ +   ++L V+
Sbjct: 120 DPNCPPEMAAMFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQAELSDIELSVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT  A+ MVE  A ++SE+ +L A++FGH E K ++    ++ +   KE + +    F  
Sbjct: 180 GTATAINMVESSAKEVSEEDMLGALLFGHEEIKKLVAFQQQIVQEIGKEKMEVTLLSFDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-----EIVS 293
           ++E+++  +  + +  +    EK  R + I+ +K+  + +F +     +E      ++  
Sbjct: 240 EIEKQVKDLFSQAMINAIQTEEKLAREENIEKVKETALEHFEAVLEDNDEKAGLLKQVSQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ++++   VR ++ ++KVR DGR  + +R +S+++ LL R HGS LF RG TQA+   T
Sbjct: 300 LVDNLEKDEVRRLITEEKVRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G V R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEYQVIDGLGIEEGKRFIHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSS A++C  +LALM AGVPI  PVAGIAMGL+ DG ++
Sbjct: 420 PTPEDFPYTIRLVSEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E I+  AL QAK+ R  IL 
Sbjct: 480 TVLTDIQGLEDHLGDMDFKVAGTTTGITALQMDIKIQGITEQILREALTQAKKARFEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++E R +L  + P++E+++I PD+I+ VIG GG+ I  I+++TG K++ID +G V
Sbjct: 540 ELTSTIAEPRKELSPYAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVKIDIDQEGHV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+  A I+ A+E+I  +T   EV ++Y+G V ++  FGAFV     +DGLVHIS+L+
Sbjct: 600 SIASTDAAMIQRAKEIIEDLTREIEVGQVYEGTVRRIEKFGAFVEIAKGKDGLVHISELA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            ERVAK  DV+  GD V VK+ + D +G+I LS K + +   
Sbjct: 660 HERVAKVEDVLAIGDKVKVKVTEIDGQGRINLSRKALIEKEA 701


>gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4]
 gi|123130662|sp|Q0HLF6|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4]
          Length = 699

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/692 (48%), Positives = 473/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   + NE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +   S L+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+ AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +   ++ 
Sbjct: 181 TEGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  L  +  I  K  R  Q+  +K        + +   +  E+  +   ++
Sbjct: 241 LVAQVKELAEVGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  ++  + R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD+F++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQ 692


>gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
 gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
          Length = 704

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/698 (50%), Positives = 484/698 (69%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P    +   +  + 
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + + + L  +  + +K  R   I  +KK ++   +       W  G++   F +++
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGSLAPRATVEGWVAGDLSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++TPR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYTPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|258645480|ref|ZP_05732949.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
           15470]
 gi|260402833|gb|EEW96380.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
           15470]
          Length = 694

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/691 (42%), Positives = 452/691 (65%), Gaps = 3/691 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L +ETG++A+Q+ GAVL  YGETVVL T    +  ++G DFFPLTV+Y+
Sbjct: 3   KSFRMELAGRSLIVETGKMAKQASGAVLVRYGETVVLVTSTASKEAREGMDFFPLTVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGK+PGG+LRRE RP  + IL +R+IDR IRPLF K  +N+  V+  V+  D ++
Sbjct: 63  EKMYAVGKMPGGFLRREGRPGNSAILNARLIDRPIRPLFDKRCRNDIHVMATVLSVDYDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P +  M+ ASA+L +S +P++GP+ G +V  ++G++V+NP  ++ +  +L++ V+G++ 
Sbjct: 123 APELCGMLGASASLGISDIPWDGPIAGVRVGCVDGKFVINPTQEQLKVSTLNITVAGSET 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
           A+LMVE  A +  E+ VLDAI+FGH   K ++    K+ +   K    +   +  + ++ 
Sbjct: 183 AILMVEGGAQEAPEEDVLDAIMFGHETIKELVAFQKKIIEEVGKPKRTLIFPEIPEEIKT 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +    +  L+ + F P+K  R   +++++K+  ++F   +   N  +I      +  ++
Sbjct: 243 AIYAYAERPLKEAIFNPDKLTREAHMEEVRKEAEAHFKEIYPE-NGSDIAECLNHLTKEI 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++   K+R DGR  + +R IS +VGLL R HGS+LF RG TQA+ + TL    + Q 
Sbjct: 302 VRHMISVDKIRPDGRALDEIRPISCEVGLLPRVHGSALFTRGQTQALTITTLAPMSETQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L+      ++  YNF   + GE      P RREIGHG LA RA+ PV+P   +FPY 
Sbjct: 362 IDDLTQETEKRYIHQYNFPSYSVGETKSSRGPGRREIGHGALAERALIPVIPTVEEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSS A+VCGS+++LM+AGVPI  PVAGIAMGLV +G+ F +L+DI G 
Sbjct: 422 IRVVSEILESNGSSSQASVCGSTMSLMNAGVPIKAPVAGIAMGLVNEGEHFTVLTDIQGM 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT  GITA+QMD+KI G+S  I++ ALQQA++GR+ IL +M++ + + 
Sbjct: 482 EDALGDMDFKVAGTAKGITAIQMDIKIHGLSREILLAALQQAQKGRMFILGKMAECIDKP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
              L  + P++  + IP D+IR+VIG GGK+I  I+ +TG K+++++DG V IA+     
Sbjct: 542 AEHLSPYAPKIITLTIPVDRIRDVIGSGGKIINKIISETGVKMDVEEDGHVYIATPDEEA 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A++ +  +T   +V + Y G+V ++M FG FV     ++G+VH+SQL+T RV K  D
Sbjct: 602 AQRAKKWVEELTHEVQVGETYLGKVTRLMKFGVFVEILPGKEGMVHVSQLATRRVEKPED 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV EGD + VK+ + DD+G+I LS K + Q 
Sbjct: 662 VVHEGDEIMVKVTEIDDKGRINLSRKALLQE 692


>gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 704

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/698 (50%), Positives = 483/698 (69%), Gaps = 4/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P    +   +  + 
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + + + L  +  + +K  R   I  +KK ++   +       W  G++   F +++
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGVLAPRATIEGWAAGDLSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             D +KEGD V VK+L+ D +G+I+LS+K V++  G P
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVP 700


>gi|163796758|ref|ZP_02190716.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           BAL199]
 gi|159178012|gb|EDP62559.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           BAL199]
          Length = 684

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/680 (55%), Positives = 502/680 (73%), Gaps = 7/680 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +ARQ+DGAV+A YG+TVVL TVV  ++ + G DFFPL+V+YQE+TY+ GKIPGG+ +RE 
Sbjct: 1   MARQADGAVVARYGDTVVLCTVVAAKTPRQGIDFFPLSVHYQEKTYSAGKIPGGFFKREG 60

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RPTE E+L SR+IDR IRPLF K +KNETQVI  V+ HDLE+ P VV+MV  SAAL +SG
Sbjct: 61  RPTEKEVLTSRLIDRPIRPLFVKGFKNETQVICTVLAHDLENDPDVVAMVGTSAALCISG 120

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+ G +V Y NG+YVLNP +++ +   LDL V+GTQ+ VLMVE  A++L+E+V+L
Sbjct: 121 VPFLGPIAGCRVGYTNGEYVLNPLMEDAKTSDLDLMVAGTQEGVLMVESMASELTEEVML 180

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIP 259
            A+ FGH   +PVI+AI +LA+ CAK+P+ + + D   + L   +    K D   +   P
Sbjct: 181 GAVTFGHESFQPVIQAIIELAEACAKDPMDLPAPDLDGNGLRGRVEAACKADFEAAYDEP 240

Query: 260 EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319
            K  R  ++   K K ++                + + I++ +VR  +L    R+DGRD+
Sbjct: 241 NKSERQNKLAAAKAKAIASL---EDPAEADAAKGLLKGIESDIVRGRILKTGQRIDGRDT 297

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           +TVR I A+VG+L RTHGS+LF RG+TQA+VV TLGT +DEQ VD+L G  R +FM+HYN
Sbjct: 298 KTVRPIVAEVGILPRTHGSALFTRGETQALVVTTLGTGQDEQIVDALDGEYRENFMLHYN 357

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F P + GE  RMG+P RREIGHG+LA RA  P++P    FPYT+R+VSEITES+GSSSMA
Sbjct: 358 FPPYSVGEAGRMGSPGRREIGHGKLAWRATRPLMPTKDAFPYTVRVVSEITESNGSSSMA 417

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           TVCG+SLA+MDAGVP+ +P+AGIAMGL+K+G+ F +LSDI GDEDHLG MDFKVAGTD G
Sbjct: 418 TVCGTSLAMMDAGVPLPRPIAGIAMGLIKEGEQFAVLSDILGDEDHLGDMDFKVAGTDKG 477

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           ITA+QMD+KI  I++ IM +AL QA+ GRLHIL EM+K L+ +R  + +  P++ +M IP
Sbjct: 478 ITALQMDIKITSITKEIMDVALGQARDGRLHILGEMAKALTNAREGVSDTAPKMTMMKIP 537

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            D+IR VIG GGKVIR I E TGAK++I+DDG+VKI++   + ++AA   ++SI   PE+
Sbjct: 538 VDKIREVIGSGGKVIREICETTGAKIDIEDDGSVKISAVEQSALDAAYNWVKSIVAEPEI 597

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
            +IY G+VVKV++FG FV+F G +DGLVHISQL +  R  K  +VVKEGD+V VK++ FD
Sbjct: 598 GEIYTGKVVKVLEFGCFVNFLGPKDGLVHISQLVADRRPEKVDEVVKEGDSVKVKVIGFD 657

Query: 679 DRGKIKLSMKVVDQNTGKPI 698
           DRGK+KLSMKVVDQ TG+ +
Sbjct: 658 DRGKVKLSMKVVDQKTGEDL 677


>gi|313891639|ref|ZP_07825246.1| polyribonucleotide nucleotidyltransferase [Dialister
           microaerophilus UPII 345-E]
 gi|313119917|gb|EFR43102.1| polyribonucleotide nucleotidyltransferase [Dialister
           microaerophilus UPII 345-E]
          Length = 697

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/695 (42%), Positives = 467/695 (67%), Gaps = 5/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T ++E AGRPL +ETG++A+Q+ G+VL  YG+TVVL    + +  ++G DFFPLT
Sbjct: 1   MFE--TFQMELAGRPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGK+PGG+LRRE RP  + +L +R+IDR IRPLF K  +++  V+  V+  
Sbjct: 59  VDYEEKMYSVGKMPGGFLRREGRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D +++P +  ++ ASA++ +S +P++GPV G +V  ++G++V+NP  ++ +  ++++ V+
Sbjct: 119 DYDNAPELCGLLGASASIAISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERSTMNITVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G++ A+LMVE  A + SE+ VLDAI++ H   K ++E   K+ +   K+   +   +  +
Sbjct: 179 GSETAILMVEGGAKEASEEEVLDAIMYAHTVIKQLVEFQKKIIEKVGKQKKELVFAEIPE 238

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +E+ + +  + +LR + F P+K  R   +++++K+  ++F   +   NE ++++  + +
Sbjct: 239 EIEKAIYEYAENNLREAIFNPDKLTREAHMEEVRKEAENHFKEIYPD-NESDVITCLDHL 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
              +VR ++   K+R DGR  + +R I+ +VG++ RTHGS+LF RG TQA+ + TL    
Sbjct: 298 TKSIVRKMISVDKIRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMN 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D L+      ++  YNF     GE      P RREIGHG LA RA+ PV+P   +
Sbjct: 358 ETQIIDDLTLVNEKRYIHQYNFPSYCVGETKSSRGPGRREIGHGALAERALEPVIPSVDE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VSEI ES+GSSS A+VCGS+++LM+AGVPI  PVAGIAMGLV +G+ F IL+D
Sbjct: 418 FPYAIRVVSEILESNGSSSQASVCGSTMSLMNAGVPIHAPVAGIAMGLVNEGEHFTILTD 477

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT  GITA+QMD+KI G+S  I++ AL+QA +GR+ IL ++++ 
Sbjct: 478 IQGMEDALGDMDFKVAGTAKGITAIQMDIKIHGLSREILMAALKQAHKGRMFILGKIAEC 537

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S+    L  + P++  + IP D+IR+VIG GGK I  I+ +TG K+++++DG V IAS 
Sbjct: 538 ISKPAEHLSPYAPKIITLTIPVDKIRDVIGTGGKTINKIITETGVKMDVEEDGRVYIASV 597

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A++M+ S+T   +  ++Y G+V ++M FG FV     ++G+VHISQL+ +RV 
Sbjct: 598 DEEAAQKAKKMVESLTHEVKPGEVYLGKVTRLMKFGVFVEILPGQEGMVHISQLALKRVE 657

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  DVV EGD + VK+++ DD+G+I LS K + Q 
Sbjct: 658 KVEDVVHEGDEIMVKVMEIDDKGRINLSRKALLQE 692


>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
          Length = 705

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/696 (49%), Positives = 473/696 (67%), Gaps = 5/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV   + E AGR +  ETGR+ARQ+ G++LA  G+ VV       +    G DF PLT
Sbjct: 9   MFDVKKTQAEVAGRTISFETGRVARQAGGSILAQVGDVVVHVAATCAKQPLQGVDFMPLT 68

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+  GG+ +RE RP+E E L SR+IDR IRPLF K Y +ETQVI  VM  
Sbjct: 69  VHYQEKTYAAGRFLGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVMSV 128

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P +V++   SAAL +S +PF  P+  ++V  I+G+++LNP  ++  + SLDL V+
Sbjct: 129 DEGTNPDIVAINGVSAALAISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESSLDLIVA 188

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+DAVLM+E EA +LSE+ ++DAI FG    +PV++AI +L K+  KE +VI+     S
Sbjct: 189 GTRDAVLMIESEAKELSEEQMIDAISFGQAGYQPVLDAIEELVKLAGKEKLVIELAGGNS 248

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVF 295
            +++ ++   + D+R +  I +K  R  +I+  +    + F+    +   ++  ++ S  
Sbjct: 249 DVQDAVNAAFEADVRAAYAITDKSARAAKIEAFRAAAQAKFAGTEDAPGAYSSNDVSSAM 308

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++ KVVR  ++    R+DGR +  VR I  QVG+L RTHGS+LF RG+TQA+V +TLG
Sbjct: 309 KSLEKKVVRRSIIAGNPRIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLG 368

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q  +SL G  +  FM+HYNF P + GE  R G P RREIGHGRLARR +  VLP 
Sbjct: 369 TESDMQMTESLEGVAKQRFMLHYNFPPYSVGEARRFGPPGRREIGHGRLARRGVEAVLPS 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F Y +R VSEITES+GSSSMA+VCG+SLALMDAGVP+   VAG+AMGL+ + D + +
Sbjct: 429 MEKFGYAIRSVSEITESNGSSSMASVCGTSLALMDAGVPVKAAVAGVAMGLILEQDGYAV 488

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+T +Q+D+KIGG++  IM  AL QA  GR+HIL+EM
Sbjct: 489 LTDILGDEDHLGDMDFKVAGTREGVTTLQLDIKIGGLTREIMQEALAQAHAGRMHILDEM 548

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +   R  + +  PR+  M +  D+IR VIG GGKVIRGIVE TGAKV+I+DDGT+KI
Sbjct: 549 AKCMETPRGAIADHAPRMFTMKVKVDKIREVIGAGGKVIRGIVEATGAKVDIEDDGTIKI 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +    EAA++MI  I    EV  IY G+VVK+MDFGAFV   G  DGLVHISQ++  
Sbjct: 609 FAVTGDAGEAAKKMIEDIVAEVEVGAIYTGKVVKLMDFGAFVRVVGGTDGLVHISQIANH 668

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV K +D +KEG  V VK+L+ D +GKI+LSMK V+
Sbjct: 669 RVEKVADELKEGQEVRVKVLEVDRQGKIRLSMKDVE 704


>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase/polyadenylase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123575939|sp|Q3ABA6|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 731

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/700 (46%), Positives = 467/700 (66%), Gaps = 18/700 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            EI  AGRPLKL  G++A Q+ G+VL +YG+TVVL T    +  ++G DFFPLTV+Y+ER
Sbjct: 10  KEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEER 69

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+++RE RP+E  IL +R+IDR IRPLF K +KN+  ++  V+  + ++ P
Sbjct: 70  FYAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPP 129

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            + +M  ASAAL LS LPF GP+    V  +  + V+NP +++ ++  L L V+GT+DAV
Sbjct: 130 EIAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGTRDAV 189

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFSKL 240
           +MVE  A ++ E+++++AI  GH E K ++  I +  +       AKE + +  ++ ++L
Sbjct: 190 MMVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKEKMEVVVEEKAEL 249

Query: 241 EEEMSQMIKEDLRVSC--FIPEK---YVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +E ++      L+ +    I EK     R + +++LKK++ + F   +    E  I  + 
Sbjct: 250 KEAVTAEAYPLLKEAIEKIIAEKFNKQERDEYLENLKKELTTKFLETYPEE-ELTIKGIL 308

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + IQ ++VR  +L + +R+DGR ++ VR I  +VGLL RTHGS LF RG TQ + +VTLG
Sbjct: 309 DSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLG 368

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L   +   FM HYNF P + GEV  M  P RREIGHG LA RA+ PV+P 
Sbjct: 369 AVGDVQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIPP 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+RIVSE+ ES+GS+SM +VCGS+LALMDAGVPI  PVAG+AMGL+K+GD+  I
Sbjct: 429 EEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVAI 488

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GITA+QMD+KI G++ +I+  AL QA+ GR+HIL +M
Sbjct: 489 LTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMHILGKM 548

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +V+SE R +L  + PR+    + P++IR++IG GGK+I+ I+++TG K++I+DDG + I
Sbjct: 549 LEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVKIDIEDDGRIFI 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649
           A+      E A  +I ++T   EV K+Y G+V ++ DFGAFV           ++GLVHI
Sbjct: 609 AAVDKEAGEKALNIIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKEGLVHI 668

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           SQL+  RV +  DVVKEGD + VK + +D++G++KLS K 
Sbjct: 669 SQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRKD 708


>gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b]
          Length = 729

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/697 (47%), Positives = 480/697 (68%), Gaps = 2/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNY
Sbjct: 3   KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E
Sbjct: 63  QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
            SP +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP   ++++  LDL ++GT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + + ++  +  I +K  R +++ +L+++ +S   +E+   N   I ++F +++  
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADVIANMFGELERS 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q
Sbjct: 303 IVRNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY
Sbjct: 363 ILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LRIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI G
Sbjct: 423 VLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E
Sbjct: 483 DEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S    
Sbjct: 543 HRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKM 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  
Sbjct: 603 ALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +V++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 663 EVLQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|126698917|ref|YP_001087814.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           630]
 gi|254974863|ref|ZP_05271335.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-66c26]
 gi|255092250|ref|ZP_05321728.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           CIP 107932]
 gi|255100339|ref|ZP_05329316.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-63q42]
 gi|255306276|ref|ZP_05350447.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           ATCC 43255]
 gi|255313990|ref|ZP_05355573.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-76w55]
 gi|255516670|ref|ZP_05384346.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-97b34]
 gi|255649769|ref|ZP_05396671.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-37x79]
 gi|260682926|ref|YP_003214211.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           CD196]
 gi|260686524|ref|YP_003217657.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           R20291]
 gi|306519874|ref|ZP_07406221.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-32g58]
 gi|123363602|sp|Q18BI4|PNP_CLOD6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115250354|emb|CAJ68176.1| Polyribonucleotide nucleotidyltransferase [Clostridium difficile]
 gi|260209089|emb|CBA62243.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           CD196]
 gi|260212540|emb|CBE03500.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           R20291]
          Length = 703

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/698 (42%), Positives = 455/698 (65%), Gaps = 4/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    ++++AGR L +E G+I   + G+ +  Y +++V+         +DG DFFPL+
Sbjct: 1   MFEHKIFKMDFAGRELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGKIPGG+L+RE +P+E  IL SR+IDR IRPLF K ++N+ QV+  V+  
Sbjct: 61  VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P +V+M+ +S AL +S +PF GP     V  ++G +V+NP  ++ ++ S+ L VS
Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVCVGLVDGAFVVNPNAEQREKSSMHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT++A++MVE  A+++ ++V+LDAI+F H E K ++E I  +     KE + ++      
Sbjct: 181 GTKEAIMMVEAGADEVPDEVMLDAILFAHQEIKKIVEFIEGIVAEVGKEKMPVELYHAGE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFE 296
           ++ + + +   + ++ +    EK  R + +D +K++ +++F    E      G+I  V +
Sbjct: 241 EITQLVREFATDKMKKAVQTFEKLERMENMDRVKEETLAHFEETLEDFEDFVGDIEEVLQ 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI  + VR +++ + VR D R  E +R I  + G++ R HGS++F RG TQ + V TLG 
Sbjct: 301 DIIKEEVRKLIVHENVRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGA 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P  
Sbjct: 361 LGDVQKLDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVIPSQ 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A+VCGS+L+L+DAGVPI   VAGIAMGL+K      +L
Sbjct: 421 EEFPYAIRLVSEVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKVAGT+ GITA+QMD+KI GI + I+  AL+QAK GR+HIL EM 
Sbjct: 481 SDIQGMEDHLGDMDFKVAGTEYGITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMR 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S+ + +L  + P++  M I PD+I++VIG GGK+I  I+++TG K++I+  G V I+
Sbjct: 541 KTISQPKPELSPYAPKIVKMQINPDKIKDVIGPGGKIITKIIDETGVKIDIEQTGEVFIS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
              +  I+ A+E+I +I   PEV K YKG+V ++M+FGAFV     ++GL+HIS ++ ER
Sbjct: 601 GIEIDMIKKAQELINNIVVEPEVGKTYKGKVSRIMNFGAFVEILPGKEGLLHISHIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           VAK  DV+  GD V VK+ + D++G++ LS KV+    
Sbjct: 661 VAKVEDVLNIGDEVEVKVTEIDEKGRVNLSRKVLLPKP 698


>gi|227517327|ref|ZP_03947376.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX0104]
 gi|256960415|ref|ZP_05564586.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Merz96]
 gi|257417198|ref|ZP_05594192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           AR01/DG]
 gi|257420479|ref|ZP_05597469.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           X98]
 gi|293383916|ref|ZP_06629818.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           R712]
 gi|293388310|ref|ZP_06632824.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           S613]
 gi|300861666|ref|ZP_07107750.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|307286415|ref|ZP_07566521.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0109]
 gi|312906743|ref|ZP_07765743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|312910719|ref|ZP_07769558.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|227075197|gb|EEI13160.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX0104]
 gi|256950911|gb|EEU67543.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Merz96]
 gi|257159026|gb|EEU88986.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ARO1/DG]
 gi|257162303|gb|EEU92263.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           X98]
 gi|291078743|gb|EFE16107.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           R712]
 gi|291082320|gb|EFE19283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           S613]
 gi|295114393|emb|CBL33030.1| polyribonucleotide nucleotidyltransferase [Enterococcus sp. 7L76]
 gi|300849127|gb|EFK76880.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|306502428|gb|EFM71701.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0109]
 gi|310627391|gb|EFQ10674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|311288982|gb|EFQ67538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|315143300|gb|EFT87316.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2141]
 gi|315148895|gb|EFT92911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4244]
 gi|315154770|gb|EFT98786.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0043]
 gi|315164498|gb|EFU08515.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1302]
          Length = 704

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/704 (43%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
 gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
          Length = 702

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/694 (50%), Positives = 471/694 (67%), Gaps = 3/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T   ++    + LETGR+ARQ+ G+VL T G+  VLATVV  +S + GQ FFPL+V+Y
Sbjct: 3   ITTKTFQFGKDTVTLETGRVARQATGSVLCTIGDVQVLATVVGAKSAQAGQSFFPLSVHY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER YAVGKIPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QV+I VM  + +
Sbjct: 63  QERAYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVITVMSTNTD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGT 181
           +   +  M+A SAAL +SG+PF GP+  A+V + +   YVLNP   E  GSL D+ V+GT
Sbjct: 123 TDADIAGMLATSAALSVSGIPFNGPIGAARVGFNDDDGYVLNPSYSELDGSLLDMVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKL 240
           +DAVLMVE EA +L+ED +L A++F H E +  + AI++ A    K         +   L
Sbjct: 183 KDAVLMVESEAQELTEDEMLGAVLFAHKELQAAVSAITEFAAEAGKPRWEWSAEPENETL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +  +++   + +  +  I EK  R  ++D+++   V    SE +   E ++   F  ++ 
Sbjct: 243 KAAITEGFADQVEAAYGISEKMARYSKLDEVRTAAVEALVSEEAGVEEADVTKAFAKLEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR  +++ K R+DGRD++TVR I  +VGLL +THGSSLF RG+TQAI   TLGT  D 
Sbjct: 303 NTVRRRVIESKPRIDGRDNKTVRPIEVEVGLLSKTHGSSLFTRGETQAIATCTLGTSRDA 362

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D L+G  ++ FM+HYNF P + GE  RMG   RREIGHGRLARR +  VLP   +FP
Sbjct: 363 QMSDGLAGENKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPSEEEFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+RIVSEITES+GSSSMA+VCG+SL++MDAGVP+  PVAGIAMGLVK+ D F +L+DI 
Sbjct: 423 YTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEDDGFAVLTDIL 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT+ GITA+QMD+KI GI+E IM +AL QA   R HIL EMSKV+ 
Sbjct: 483 GDEDHLGDMDFKVAGTEEGITALQMDIKIEGINEEIMDIALSQALEARTHILREMSKVIG 542

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +R ++    P +  + I P++IR+VIG GG  IR I E TGA +++DDDGTV+I ++  
Sbjct: 543 YARPEVSPNAPSMASIKIDPEKIRDVIGKGGATIRSITELTGASIDLDDDGTVRIYAADK 602

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  +AA   I  IT   EV+KIYKG V ++ +FGAFV     +DGLVHISQ++ ER+   
Sbjct: 603 ASSDAALVRIYEITAEAEVDKIYKGTVARLAEFGAFVTILPGKDGLVHISQIAEERIRAV 662

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           SD ++EG  V VK+LD D RG+IKLSMK V +  
Sbjct: 663 SDFLEEGQEVLVKVLDVDARGRIKLSMKDVSEEE 696


>gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 706

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 701


>gi|185535745|gb|ACC77873.1| polyribonucleotide nucleotidyltransferase [Staphylococcus xylosus]
          Length = 697

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/694 (44%), Positives = 461/694 (66%), Gaps = 7/694 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWA R L +ETG++A+Q++GAVL  YG+TVVL+T V  +  +DG DFFPL VN
Sbjct: 4   EKKVFKTEWANRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDG-DFFPLMVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP++   L +R+IDR IRPLF K YK + Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP + + +   LDL V+G 
Sbjct: 123 DCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGEYIINPTVAQKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DAV MVE  A++++E  +L+ I FGH+E + ++    ++      E       +  + L
Sbjct: 183 KDAVNMVEAGASEITESEMLEGIFFGHSEIQRLVNFQQEIVDHIQPEKKAFVPVEKEETL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E+++Q+ + + L+ +    +K  R   +D+LK+K+ + F  E  + NE    E+ S+  
Sbjct: 243 VEQVTQLTEANGLKDAVLTFDKQQRDINLDNLKEKVAAEFIDETDADNEALIKEVNSILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + VR ++ ++K+R DGR ++ +R + ++VG+L R HGS LF RG TQA+ V+TLG+
Sbjct: 303 DLVKEEVRRLIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGS 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L   ++  FM HYNF   + GE   + +P RREIGHG L  RA+  ++P  
Sbjct: 363 MSEYQILDGLGEEEQKRFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIPDV 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 KDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G+++ I+  AL+QA+ GRL IL+ M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTSEGITAIQMDIKIDGLTKEIIKEALEQARVGRLAILDHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L  F P+V  M I P++IR+VIG GGK I  I+++TG K++I+ DGT+ I 
Sbjct: 543 QTIDTPRNELSAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIFIG 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     I+ AR++I  IT   EV ++Y+G+V ++  +GAFV     +D LVHISQ++ ER
Sbjct: 603 AVDKNAIDQARKIIEDITREAEVGQVYEGKVKRIEKYGAFVELFPGKDALVHISQIANER 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + K  DV+K GDT  +K+ + D +G++  S KV+
Sbjct: 663 IEKVEDVLKVGDTFKIKVTEIDKQGRVNASHKVL 696


>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
           eiseniae EF01-2]
 gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
          Length = 757

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/697 (48%), Positives = 480/697 (68%), Gaps = 2/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+  T   +W  + + +ETG IARQ+ GAVL +  +TVVLATVV  RS+K GQDFFPLT
Sbjct: 3   IFNKVTKTFQWGDQTVVMETGEIARQASGAVLVSIDDTVVLATVVASRSIKPGQDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPG + +RE++P+E+E L SR+IDR +RPLF + + NE  ++I+ +  
Sbjct: 63  VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPLRPLFPQGFFNEVHLVIHTLSL 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +++A+SAAL LSG+PF GP+  A+V YI G+Y LNP     + S LDL V+
Sbjct: 123 NPEVDADIAALIASSAALALSGIPFNGPIGAARVGYIQGEYRLNPGPTARKSSQLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA QLSE+++L A++FGH + K  I+AI +L     K     ++     
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGKVAIDAIHELVHAAGKPVWQWEAPARDE 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ +  + LR +  I  K  R +        +++   ++    +  +   +  DI
Sbjct: 243 ALIARVAALADDKLRAAYQIRNKQARTEACRAAYAAVLAQLQADGVECDTVKAEGLLFDI 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A +VR+ +L  + R+DGRD+ TVR I  + G+L R HGS+LF RG+TQA+ V TLGT  
Sbjct: 303 EAGIVRSQILAGEPRIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTER 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L+G   + FM+HYN  P ATGEV RMG+  RREIGHGRLA+RA+  VLP   +
Sbjct: 363 DAQRIDALAGEYDDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG  L+LMDAGVP+   VAGIAMGL+KDG+ F +L+D
Sbjct: 423 FPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFAVLTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL QAK  R+HIL +M + 
Sbjct: 483 ILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQQA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + +++ ++  F P++  M I  ++IR+VIG GG VIR + E+TG ++NI++DGT+ IA++
Sbjct: 543 IGQAKTEVSNFAPKLYTMKINAEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAAT 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A+ + A+  I  IT   E+ KIY+G V K++DFGA ++    +DGL+HISQ++ ERV 
Sbjct: 603 DAAKADIAKRRIEQITAEIEIGKIYEGPVTKLLDFGALINLLPGKDGLLHISQIAHERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD + EG  V VK+++ D+RG++KLSMKV+ +   
Sbjct: 663 RVSDYLSEGQIVRVKVMEADERGRVKLSMKVLAERPA 699


>gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
          Length = 708

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/696 (44%), Positives = 466/696 (66%), Gaps = 10/696 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E  GR L LETG++A+Q++G+VL  YGETV+L T   D     G D+FPL +
Sbjct: 1   MENQEWKMELGGRELTLETGKLAQQANGSVLVRYGETVILVTATMDD--PRGMDYFPLMI 58

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NY+ER Y+VGKIPGG+++RE RP+E   L SR+IDR +RPLF +  +++ QVI  V+  D
Sbjct: 59  NYEERLYSVGKIPGGFIKREGRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVD 118

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            ++SP V +M+ ASAAL +S +PFEGP+ G  V  ++G+ +LNP ++E ++ SLDL V+G
Sbjct: 119 NDNSPEVAAMIGASAALSISDIPFEGPIGGVNVGLVDGELILNPTVEEQEESSLDLIVAG 178

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFS 238
            +D V+MVE  AN+++ED +++AI +GH + + +I+   ++     KE   ++  + +  
Sbjct: 179 NKDGVMMVESAANEVTEDKMIEAIDYGHQKLQGIIKLQEEMVAKIGKEEADLELVTVEDP 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVS 293
           ++E  + +   EDL+ +    +K  R + +D +K+++  +F+ E +     E     + S
Sbjct: 239 EVEAAVREYAGEDLKEALLTKDKAERGENLDQVKEEVKEHFTDEFADDEGTEEKMKVVSS 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + I  + +R+++LD+  R+DGRD + VR I  +V +L R HGS +F RG TQ + V T
Sbjct: 299 TLDKITKETIRSLVLDEGKRVDGRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVMTVAT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ +D +   +   +M HYNF   + GE   +  P RREIGHG L  RA+ P++
Sbjct: 359 LGAVGDEQRLDGIEVKESKRYMHHYNFPSFSVGETGPIRGPGRREIGHGALGERALRPMI 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+   FPYT+R+VSE+ ES+GS+S A++CGS+L+LMDAGVPI KPVAGIAMGL+K GD  
Sbjct: 419 PEHDDFPYTIRLVSEVLESNGSTSQASICGSTLSLMDAGVPIRKPVAGIAMGLMKKGDKV 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI G ED  G MDFKVAG++ GITA+QMD+KI GIS++I+  AL+QA++GRLHIL+
Sbjct: 479 EVLSDIQGIEDFNGDMDFKVAGSEDGITALQMDVKIKGISKDILAEALEQARQGRLHILD 538

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M +V+ ESR +L  + P +  M I P++IR+VIG GGK I+ I+++TG  V+I+DDGTV
Sbjct: 539 KMLEVMPESRDELSPYAPSIITMEIDPEKIRDVIGPGGKTIKKIIDETGVNVDIEDDGTV 598

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IA+      + A++M+  +T+  EV +IY G+V +V  FGAFV     ++GLVHIS+L+
Sbjct: 599 FIAADDQESGKQAQQMVAKMTEDVEVGEIYLGEVKRVTHFGAFVEILPGKEGLVHISELA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              V +  D++  GD + VKL + DD+ ++ LS K 
Sbjct: 659 DYHVDEVEDLLTVGDEILVKLTEIDDKDRLNLSRKE 694


>gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 706

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  ++ E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIVGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 701


>gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii
           KSM-K16]
 gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
           KSM-K16]
          Length = 710

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/698 (44%), Positives = 461/698 (66%), Gaps = 4/698 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           + H   I+WAGR L +E G++A+Q++GAVL  YG+T VL+T    +  KD   FFPLTVN
Sbjct: 4   ERHEFSIDWAGRTLSVEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YA GKIPGG+++RE RP+E  IL SR+IDR IRPLF   ++N+ QVI  VM  D 
Sbjct: 63  YEERLYAAGKIPGGFIKREGRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           ++SP + +M+ +S AL +S +PFEGP+ G  V  ING++++NP   +  +  +DL V+GT
Sbjct: 123 DASPEMAAMIGSSLALCVSDIPFEGPIAGVTVGRINGEFIMNPTPAQLAESDIDLTVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           ++A+ MVE  A ++ EDV+L+AI+ GH   K +I    K+ ++C KE   +  K F ++L
Sbjct: 183 KEAINMVEAGAKEVPEDVMLEAILAGHENIKKMIAFQEKVVEVCGKEKREVQLKTFDAEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  + +  +  ++ +  I EK+ R   ID++    V   S +  S N  E+  + +    
Sbjct: 243 EARLRESAEASIKEAVRIAEKHARQDAIDEIIAAQVEQHS-DDDSINVDEVKEILQMFVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++  +K+R DGR  + +R +S+Q+ LL RTHGS LF RG TQA+ V TLG   D 
Sbjct: 302 EEVRRLITVEKIRPDGRGVDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  V+P   +FP
Sbjct: 362 QVLDGLGIEETKRFMHHYNFPQFSVGETGPIRAPGRREIGHGALGERALEQVIPSEQEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK G+   +L+DI 
Sbjct: 422 YTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQGEHMTVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAGT +G+TA+QMD+KI GI+  ++  AL+QAK+GR+ IL+ M + + 
Sbjct: 482 GMEDALGDMDFKVAGTANGVTALQMDIKISGINREVLEQALEQAKQGRMKILSNMMEAID 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L E+ P++  + I PD+IR+VIG  GKVI  I+E+TG K++I+ DGTV I+S   
Sbjct: 542 KPRAELSEYAPKILTLTINPDKIRDVIGPSGKVINKIIEETGVKIDIEQDGTVYISSLDT 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  + A+++I  +    +V + Y G+V ++  FGAFV     +DGL+HISQ++ ER+ K 
Sbjct: 602 AMNQKAKQIIEDLVREVQVGETYHGKVKRIEKFGAFVELFKGKDGLLHISQIAEERINKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            DV K GD V V++ + D++G++ LS KV+ +   + +
Sbjct: 662 EDVFKLGDEVDVRVTEIDNQGRVNLSRKVLLKEQREKL 699


>gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 762

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/697 (43%), Positives = 447/697 (64%), Gaps = 5/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 E AGRPL +E G++A+Q++G+ L  YG+TV+LAT    +  + G DFFPL V++
Sbjct: 14  KKVFRTELAGRPLVVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDW 73

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA G+IPG + RRE +P+E  IL  R+ DR +RPLF K Y+N+ Q+I+  + +D +
Sbjct: 74  EERLYAAGRIPGSFFRREGKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDD 133

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +  ++ AS AL +S +P+ GPV   +V  ++G+ V+NP   + +   LDL V+GT+
Sbjct: 134 CSPEIAGIIGASVALGISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSRLDLTVAGTR 193

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DA+ MVE  A+++ E  +LDAI  GH E + ++E    +   C K        +      
Sbjct: 194 DAINMVEAGAHEVPEATILDAIFRGHEEIRRLVEFQEAIIAQCGKPKAEPVLYEPDPNVA 253

Query: 243 -EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +     E LR +   P+K  R + +D++KK  +    +E     E +I  V +D+  +
Sbjct: 254 VAVRARYTERLRAAINHPDKQAREQAVDEVKKTALEELLAEFPEA-ELDIKHVLDDVLKE 312

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD+ +R DGR    +R I  +VGLL R HGS LF RG TQ + V +LG   D Q
Sbjct: 313 IVRRQILDEGIRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQ 372

Query: 362 YVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D+L    +   +M HYNF P +TGEV+ + APSRREIGHG LA RA+ PVLP    FP
Sbjct: 373 MLDTLGQIEEFKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELDFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+  S+GS+SMA+ CGS+LALMDAGVPI  PVAG+AMGL+K+GD F +L+DI 
Sbjct: 433 YTIRLVSEVLSSNGSTSMASTCGSTLALMDAGVPIKAPVAGVAMGLIKEGDRFAVLTDIQ 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  G+TA+QMD+KI G+   ++  AL+QA+ GRL IL +M  V+ 
Sbjct: 493 GIEDHLGDMDFKVAGTREGVTAIQMDIKIAGVDRAVLETALEQARAGRLFILEKMLAVID 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L  + PR+ IM IP ++IR VIG GG+++  I ++ G K++I+DDG V IA+ + 
Sbjct: 553 KPRPELSPYAPRIIIMQIPVEKIREVIGPGGRMVNRIADECGVKIDIEDDGKVYIAAQTQ 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A+E I  I    EV  +Y G+V ++M FGAFV     ++GLVH+S+L+ +RV K 
Sbjct: 613 QGGQKAKEWIEQIVADVEVGSVYLGKVTRLMTFGAFVEILPGKEGLVHVSRLAPQRVPKV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696
            D+V+ GDTV VK+++ DD G++ LS K  +++   K
Sbjct: 673 EDMVRPGDTVLVKVVEIDDLGRVNLSRKDAIEEQPEK 709


>gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
 gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
          Length = 714

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/697 (48%), Positives = 479/697 (68%), Gaps = 7/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++H    ++    + LETG IARQ+ G+V+ T  +TVVLATVV  +S K GQDFFPLT
Sbjct: 1   MFEIHKETFQYGQHTVTLETGEIARQAGGSVIVTVDDTVVLATVVAAKSAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA G+IPGG+ +RE + TE E L +R+IDR +RPLF + + NE QV + VM  
Sbjct: 61  VDYVEKFYAAGRIPGGFFKREGKGTEQETLNARLIDRPLRPLFPEGFFNEVQVTLTVMSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E +P + +M+ ASAAL ++G+PF GPV GA+V YIN QYVLNP   + + S +DL V+
Sbjct: 121 NPEVNPDIPAMLGASAALSIAGIPFNGPVGGARVGYINDQYVLNPTATQLKDSKMDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA++LSE+++L  I+FGH + +  I AI  L     K          ++
Sbjct: 181 GTEAAVLMVESEAHELSEEIMLGGIMFGHEQMQAAINAIHALTAKAGKPEWDWKPAPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-----SSEHSSWNEGEIVS 293
            L   ++++  E L  +  + EK  R +++ ++  ++ +         + +     ++  
Sbjct: 241 PLLAAVTELAGEKLAAAYKMTEKQARSQRLKEISAEVAAELPAKLTEEQRAGITNADVGD 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   ++AK+VR  +L+ + R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+VV T
Sbjct: 301 IMFGLEAKIVRGQILNGEPRIDGRDTRTVRPITVRTGVLPRAHGSALFTRGETQALVVTT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D+++G  R+ FM HYN  P ATGE  RMGAP RREIGHGRLARRA+  +L
Sbjct: 361 LGTGRDEQMIDAVAGEYRDRFMFHYNMPPYATGECGRMGAPKRREIGHGRLARRAVEMML 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEITES+GSSSMA+VCG +L+LMDAGVP+ + VAGIAMGL+K+ + F
Sbjct: 421 PAPEDFQYTMRVVSEITESNGSSSMASVCGGALSLMDAGVPLKQLVAGIAMGLIKEENKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QA+ GR+HIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRMHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M +    +  +L  + PR+  M I P++IR+VIG GG  IRGI EQTGA ++I +DG++
Sbjct: 541 IMKEATGGNVGELSAYAPRMITMKINPEKIRDVIGKGGATIRGITEQTGASIDIKEDGSI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS      E A+++I  IT   EV  +Y+G V+K++DFGA V     +DGL+HISQ++
Sbjct: 601 TIASVDGDAGERAKKLIEDITAEVEVGAVYEGTVLKLLDFGAIVSVLPGKDGLLHISQIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV    D +KEG  V VK+L+ D++G+++LSMK +
Sbjct: 661 NERVNTVGDFLKEGQVVKVKVLEADEKGRLRLSMKAL 697


>gi|24372791|ref|NP_716833.1| polynucleotide phosphorylase/polyadenylase [Shewanella oneidensis
           MR-1]
 gi|24346879|gb|AAN54278.1|AE015565_1 polyribonucleotide nucleotidyltransferase [Shewanella oneidensis
           MR-1]
          Length = 702

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/691 (49%), Positives = 470/691 (68%), Gaps = 2/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTVN
Sbjct: 5   NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVN 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+TYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   +KNE QVII V+  D 
Sbjct: 65  YQEKTYAAGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           E  P ++SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +     L+L V+GT
Sbjct: 125 EIEPDIISMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240
           + AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +  +   L
Sbjct: 185 ESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPVEDEAL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++ ++ +     +  I  K  R  Q+  +K        + +   +  E+ ++   ++ 
Sbjct: 245 VAQIKELAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVDLREVDNLLGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR  +L    R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 305 KVVRGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +FP
Sbjct: 365 QKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 425 YSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + + 
Sbjct: 485 GDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIG 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+ 
Sbjct: 545 SHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSNG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA  
Sbjct: 605 EATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           SD ++    V VK+++ D +G+++LS+K   
Sbjct: 665 SDHLELNQEVTVKVMEVDRQGRVRLSIKEAQ 695


>gi|257083264|ref|ZP_05577625.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Fly1]
 gi|257417915|ref|ZP_05594909.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T11]
 gi|256991294|gb|EEU78596.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Fly1]
 gi|257159743|gb|EEU89703.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T11]
          Length = 704

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/704 (43%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  I+G+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
 gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 707

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 473/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 2   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  ++ E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVRGIVGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 661 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 702


>gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
 gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 707

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 2   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 661 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 702


>gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0010_16J05]
          Length = 718

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/692 (49%), Positives = 484/692 (69%), Gaps = 3/692 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  T + ++  + + +ET +IA+Q+ G+V+ T G+TVVL TVV  +S + GQDFFPLTVN
Sbjct: 19  NAITKQFQFGDQQVTIETNKIAKQATGSVVVTIGDTVVLTTVVGAKSARPGQDFFPLTVN 78

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+TYA GKIPGG+ RRE RP+E E L SR+IDR IRPLF K + NE Q++  V+  D 
Sbjct: 79  YQEKTYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIVCTVVSTDK 138

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
              P + +M+  SAAL +SG+PF+GP+  A+V Y++GQY+LNP  D  +   L++ V+GT
Sbjct: 139 NQDPDIAAMIGTSAALAISGIPFDGPIGAARVGYVDGQYLLNPGYDVLETSELNMTVAGT 198

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
             AVLMVE EA +LSED +L A++F H E + +I A+++LA    K       +   + L
Sbjct: 199 ASAVLMVESEAKELSEDQMLGAVLFAHQEMQAIITAVAELAGEIGKPRWDWQPEAKDESL 258

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQ 299
             ++   +K DL  +  I +K  R +++ +L+   V+  + +E++S +  ++  VF  ++
Sbjct: 259 FAQVEGAVKSDLGDAYRISDKMERQERVRELRDSAVAQLTGAENASHSADDVAGVFSKVE 318

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  +L+ + R+DGRD  TVR I  +VG+L + HGS+LF RG+TQA+VV TLGT  D
Sbjct: 319 KDLVRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRD 378

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
              +D+L G+ ++ FM+HYNF P + GE   M  P RREIGHG+LARR +   LP +  F
Sbjct: 379 AALIDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSATLPNSEDF 438

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAG+AMGLVK+G+ + +L+DI
Sbjct: 439 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPVKAPVAGVAMGLVKEGNRYAVLTDI 498

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM  AL QA   R+HIL EM+KV+
Sbjct: 499 LGDEDHLGDMDFKVAGTATGVTALQMDIKIDGITEEIMEAALAQAFEARVHILGEMNKVI 558

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S SR +L    P +  + + PD+IR++IG GG  IR IVE+TGA+V+I+DDG+V+I +  
Sbjct: 559 SASREELSANAPAMVTLNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRIYAED 618

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  +AA   I+ IT   EV +IYKG+V +++DFGAFV+    +DGL+HISQ++ ERV  
Sbjct: 619 GAAKDAAVNRIQEITAEAEVGRIYKGKVERIVDFGAFVNILPGKDGLLHISQIAEERVEN 678

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            +D + EG  V V +LD D RG+IKLS+K ++
Sbjct: 679 VTDYLSEGQEVEVVVLDVDQRGRIKLSIKELE 710


>gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
           23330]
          Length = 708

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/701 (48%), Positives = 477/701 (68%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H    ++  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHIKSFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYFERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+N  YVLNP   +  +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA+ L EDV+L A++FGH + + VI AI++LA+    E     + +  +
Sbjct: 181 GTEQAVLMVESEADILPEDVMLGAVVFGHEQMQTVITAINELAQEVNPEVWDWKAPEANT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
            L  ++ ++  + +  +  I +K  R  ++D+    + +   + E  +  + EI  +F++
Sbjct: 241 DLIAKVKEISGDLIAEAFKIRQKQARSAKLDEAWAAVEAVLITEETDTLAKNEIKGIFKN 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR  +L  + R+DGRD+ TVR ++ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEAAVVRGQILAGQPRIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ + + F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQT 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L +  PR+  M I PD+IR VIG GG+ IR I  +TG ++NI DDG V IA+
Sbjct: 541 AVAGP-QELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETGTEINIADDGVVTIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    EAA+  I  IT   EV K+Y+GQVVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RV   SD ++ G TV VK L+ DDRG+++LSMK +     +
Sbjct: 660 RVKNVSDYLQVGQTVSVKALEVDDRGRVRLSMKALLPQPEQ 700


>gi|315149071|gb|EFT93087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0012]
          Length = 704

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/704 (43%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  I+G+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQVIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           denitrificans OS217]
 gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans
           OS217]
          Length = 701

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/692 (48%), Positives = 474/692 (68%), Gaps = 2/692 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +     +DFFPLTVN
Sbjct: 5   NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVN 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D 
Sbjct: 65  YQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P ++SM+  SAAL +SG+PF GP+  A+V YING+Y+LNP +D+    SL+L V+GT
Sbjct: 125 QIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240
           + AVLMVE EA  L+E+++L A+ +GH++ + V++AI++      K      +      L
Sbjct: 185 KAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQAL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             ++ ++ +  +  +  I  K  R  Q+  +K    +   +E+   +  E+ ++   ++ 
Sbjct: 245 VAKIKELAEAGMTDAYQIEVKQDRYVQVGVVKAAAKAALVAENPDVDTREVDNLLGSLEK 304

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ ++  K R+DGR+ + +R ++   G+L RTHGSSLF RG+TQA+V  TLGT  D 
Sbjct: 305 NVVRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDA 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R ++ V+P   +FP
Sbjct: 365 QKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI 
Sbjct: 425 YSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDIL 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + + 
Sbjct: 485 GDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIG 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  +    PR+  + I P++IR+VIG GG VIR + E+TG  + +DDDGTVKIASS+ 
Sbjct: 545 THRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASSNG 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A   I  IT   EV ++Y G+V++++DFGAF++    +DGLVHISQ+S ERVA  
Sbjct: 605 EATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVANV 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SD ++    V VK+++ D +G+++LS+K   +
Sbjct: 665 SDHLEMNQDVKVKVMEVDRQGRVRLSIKEAQE 696


>gi|257080529|ref|ZP_05574890.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           E1Sol]
 gi|256988559|gb|EEU75861.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           E1Sol]
          Length = 704

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/704 (43%), Positives = 459/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 DQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+  +    ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDVYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|187611309|sp|Q8EHL1|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 699

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/692 (48%), Positives = 470/692 (67%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +  + G+DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E  P ++SM+  SAAL +SG+PF GP+  A+V YING+YVLNP + +     L+L V+G
Sbjct: 121 PEIEPDIISMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T+ AVLMVE EA  L E+V+L ++++GH++ + VI+AI++      K      +  +   
Sbjct: 181 TESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPVEDEA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +     +  I  K  R  Q+  +K        + +   +  E+ ++   ++
Sbjct: 241 LVAQIKELAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLAANPDVDLREVDNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  +L    R+DGR+ + VR +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KKVVRGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R I+ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  + +  PR+  + I P++IR+VIG GG VIR + E+TG  + ++DDGTVKIASS+
Sbjct: 541 GSHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQ 692


>gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
 gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
          Length = 760

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/693 (44%), Positives = 447/693 (64%), Gaps = 4/693 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +         G+P+  ETG++A Q+ GAV    G+++V A        ++G DFFPL+V 
Sbjct: 4   ESKVFTALVGGQPVVFETGKLAGQAGGAVTVRLGDSMVFAAATMSPEPREGIDFFPLSVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YA G+IPG Y RRE +P+   IL +R+ DR +RPLF+K  +NE QVI+  +  D 
Sbjct: 64  YEERLYAGGRIPGSYFRREGKPSTEAILTARLTDRPLRPLFNKEMRNEVQVILFSLSADQ 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           E+   ++ + AASAALM+S +P+ GPV   ++  I+GQ+++NP   + +   LDL ++GT
Sbjct: 124 ENPLDILCINAASAALMISDIPWGGPVGAVRIGRIDGQFIINPTFSQMEISDLDLRIAGT 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+LMVE  A +++EDV++ A+ FGH   +P+I+A  ++A    K    +        L
Sbjct: 184 RDAILMVECGAKEVAEDVMVQALQFGHEALQPLIDAQLQMAAEVGKPKREVPLFPLDPTL 243

Query: 241 EEEMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
            +++ +     L  +     +K    + +D L+K++V   ++   +  E  + + F ++ 
Sbjct: 244 VDQVYEKAAGALEAALDAPHDKAQLNEAVDALQKQIVEEMAAGDETLVEP-LKNAFTEVY 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR  +L+K +R D R    +R I  +VG+  R HGS LF RG+TQ + + TLGT  +
Sbjct: 303 KKVVRRRILEKGIRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATLGTPRE 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DSL   +   +M HYNF P +TGEV  +   SRREIGHG LA RA+ PV+P   +F
Sbjct: 363 AQELDSLVPIETKRYMHHYNFPPYSTGEVKPLRGQSRREIGHGALAERALEPVIPPEDEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYTLR+VSE+  S+GS+SMA+VCGS+LALMD GVPI  PVAG+AMGL+K+GD+ +IL+DI
Sbjct: 423 PYTLRLVSEVLSSNGSTSMASVCGSTLALMDTGVPIKAPVAGVAMGLIKEGDNAVILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT+ GITA+QMD+KI GI+  +M  AL QA+  RL IL +M  V+
Sbjct: 483 QGLEDHLGDMDFKVAGTEKGITALQMDIKIKGITPELMSRALAQAREARLDILKKMLAVI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R +L    PR+ I+ +P D+I  +IG GGK+IR + E+T  +++I+DDGTV IAS+ 
Sbjct: 543 PAPRPELKPHVPRITILKVPVDKIGAIIGPGGKLIRALQEETNTRIDIEDDGTVYIASTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A   AARE I ++T+ P+V +IY G+VV+V DFGAFV      DG+VHISQL +ERV +
Sbjct: 603 KAGEMAARERIEAVTETPQVGRIYTGKVVRVTDFGAFVEILPNVDGMVHISQLDSERVNR 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             DVV  GD V V + + D  GKI+LS + V +
Sbjct: 663 VEDVVNVGDEVTVMVTNIDPDGKIRLSRQAVLE 695


>gi|187611313|sp|Q12QG9|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 698

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/693 (48%), Positives = 474/693 (68%), Gaps = 2/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +     +DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            +  P ++SM+  SAAL +SG+PF GP+  A+V YING+Y+LNP +D+    SL+L V+G
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T+ AVLMVE EA  L+E+++L A+ +GH++ + V++AI++      K      +      
Sbjct: 181 TKAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  +  +  I  K  R  Q+  +K    +   +E+   +  E+ ++   ++
Sbjct: 241 LVAKIKELAEAGMTDAYQIEVKQDRYVQVGVVKAAAKAALVAENPDVDTREVDNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR+ ++  K R+DGR+ + +R ++   G+L RTHGSSLF RG+TQA+V  TLGT  D
Sbjct: 301 KNVVRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R ++ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  +    PR+  + I P++IR+VIG GG VIR + E+TG  + +DDDGTVKIASS+
Sbjct: 541 GTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV ++Y G+V++++DFGAF++    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            SD ++    V VK+++ D +G+++LS+K   +
Sbjct: 661 VSDHLEMNQDVKVKVMEVDRQGRVRLSIKEAQE 693


>gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName:
           Full=Polynucleotide phosphorylase 4; Short=PNPase 4
 gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 704

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/695 (45%), Positives = 458/695 (65%), Gaps = 3/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   + E AG+ L +E G+ A Q+ G+ +  YG+T VL      +S ++G DFFPL+V+Y
Sbjct: 2   IKQFQTELAGKTLHVEIGKYAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE+RP+E  +L SR+IDR IRPLF K Y+NE QVI  VM  D +
Sbjct: 62  EEKLYAVGKIPGGFIKREARPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            +P +V+M+ +S AL +S +PF GP     V  +NG++VLNP  D+     +DL VSGT+
Sbjct: 122 YAPDIVAMIGSSIALSISDIPFGGPTGSVNVGLVNGEFVLNPTSDQRAISDIDLVVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA++M+E  AN+++ED +LDA++F H E K ++  I ++     K    +      + L+
Sbjct: 182 DAIMMIESGANEVTEDQMLDALMFAHEEIKTIVAFIEEIVAEVGKPKQEVQLFAIDETLD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E+    K+ +  +    +K  R +++D++KK+++ +FS ++ +  +  IV V   I  +
Sbjct: 242 MEVRVFAKDKIVTAMKTFDKMERNERLDNVKKEILVHFSKQYENELKS-IVEVINSIIKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R ++   KVR D R  + +R I+++VG+L RTHG+ LF RG TQ + V TLG   + Q
Sbjct: 301 QFRYMITHDKVRPDERALDEIRPITSEVGILPRTHGTGLFTRGQTQVLTVATLGALGEVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M HYNF P + GE   +  P RREIGHG LA RA+ P++P    FPY
Sbjct: 361 ILDGLGEEESKRYMHHYNFPPYSVGEAKFLRGPGRREIGHGALAERALLPMVPSQDDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+  S+GSSS A+VCGS+LAL+DAGVPI   VAGIAMGLVK+ D   ILSDI G
Sbjct: 421 AIRLVSEVLSSNGSSSQASVCGSTLALLDAGVPIKDMVAGIAMGLVKENDKIAILSDIQG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGTD GITA+QMD+KI GI ++I+  AL+QA+ GRLHIL++M K + +
Sbjct: 481 MEDALGDMDFKVAGTDKGITAIQMDIKIKGIHKDILKDALEQARVGRLHILDKMKKAIDK 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  F PRV  M I PD+IR+VIG GGK I  I+++TG K++ID+DGT+ IA+ S  
Sbjct: 541 PRPELSPFAPRVLKMKIHPDKIRDVIGSGGKTINRIIDETGVKIDIDNDGTIFIAAESQE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A  +I +I   PEV + Y G+V+K+M+FGAF+     ++GL+H+S ++ ERV K  
Sbjct: 601 AVEKAIIIIENIIKDPEVGQNYTGKVIKIMNFGAFLEILPGKEGLLHVSNIAHERVNKVE 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV++ G  + VK+++ D +GKI LS K +     K
Sbjct: 661 DVLEVGQEIEVKVMEIDQQGKINLSRKALLPKESK 695


>gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Lens]
 gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Lens]
          Length = 729

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/697 (47%), Positives = 479/697 (68%), Gaps = 2/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T EI +    L LETG +ARQ+DGAV+A+   T VL TVV+ +   +  DFFPLTVNY
Sbjct: 3   KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA+GKIPGG+ +RE RP++NE LISR+IDR IRPLF   + NE Q+I  V+  + E
Sbjct: 63  QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
            SP +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP   ++++  LDL ++GT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LMVE EA +LSED++  A+++GH   K VI++I +LA+   K      + +  + L+
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + + ++  +  I +K  R +++ +L+++ +S   +E+   N   I ++F +++  
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADVIANMFGELERS 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD + R+DGRD  TVR IS +   L+RTHGS LF RG+TQAIVV TLG   D Q
Sbjct: 303 IVRNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +SG  R+ FM+HYNF P + GE  ++G+P RREIGHGRLA+RA+  VLP   +FPY
Sbjct: 363 ILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LRIVSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI G
Sbjct: 423 VLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR HIL  M+  L+E
Sbjct: 483 DEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNALAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G +++ S    
Sbjct: 543 HRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPDKI 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+   R  K  
Sbjct: 603 ALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAARTQKVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +V++EG  + V +   D +G++KL  K   Q   K +
Sbjct: 663 EVLQEGQEIEVFVAGIDKQGRVKLEWKDKPQAEAKEV 699


>gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
 gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
          Length = 698

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/697 (48%), Positives = 475/697 (68%), Gaps = 6/697 (0%)

Query: 1   MFD--VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M +    T   ++  + + LET RIARQ+ GAVL T GE  VLATVV  +  K GQDFFP
Sbjct: 1   MLNLTPVTKTFQFGNQEVTLETQRIARQASGAVLVTMGEIQVLATVVGKKETKPGQDFFP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTVNYQE+ YA GKIPGG+++RE+RP+E E L SR+IDR IRPLF + Y NE QV++ V+
Sbjct: 61  LTVNYQEKYYAAGKIPGGFIKRENRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVLTVV 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGSL-DL 176
             D E+ P + +M+ ASAAL +SG+PF+GP+  A+V Y     YVLNP   + + SL D+
Sbjct: 121 SADKENDPDIAAMIGASAALAISGIPFDGPIGAARVGYDAENGYVLNPTYAQLETSLLDM 180

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
            V+GT+DAVLMVE EA +LSED +L  ++F H E +  + A+ + A     E     + +
Sbjct: 181 VVAGTEDAVLMVESEAKELSEDQMLGGVLFAHQEFQVAVNAVKEFAAAVGTERWDWQAPE 240

Query: 237 F-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSV 294
             ++L  +M ++   DL  +  I +K  R   +D    K+      +     N  E+  +
Sbjct: 241 IDTELYGKMKEVAFADLTAAYQIKDKLARQDAVDAANTKLKEALLVDTEEESNAEELSKL 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F+ +Q +VVR  +L  + R+DGRD++TVRD++ Q  +L+ THGS+LF RG+TQ+I  VTL
Sbjct: 301 FKKLQKEVVRERILSNEPRIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+  D Q V+ L   Q+++F+ HYNF P + GE  RMGAP RRE+GHGRLARR +  ++P
Sbjct: 361 GSTRDAQVVEFLHEVQKDNFLFHYNFPPYSVGECGRMGAPGRREVGHGRLARRGVQAMMP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSEITES+GSSSMA+VC +SLALMDAGVPI  PVAGIAMGLVK+G+ F 
Sbjct: 421 SLEDFPYTVRVVSEITESNGSSSMASVCSASLALMDAGVPIKAPVAGIAMGLVKEGERFS 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL+QA   R+ IL +
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGSEAGITALQMDIKIQGITEQIMEIALEQALDARMTILKQ 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++V++E R ++    P    + IP D+I   IG GG  IRGI E+TGA V+I ++G + 
Sbjct: 541 MNEVIAEPRSEMPSNAPTYLTVKIPADKIAEAIGKGGATIRGITEETGADVDISEEGVIS 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I + +    E A+ M  ++T   EV  IY+G+V K++DFGAFV+    +DGLVHISQ+S 
Sbjct: 601 IFALTKDAAEKAKGMFEAVTAEAEVGTIYEGKVNKIVDFGAFVNILPGKDGLVHISQISD 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           ERV   +D ++EG  + VK+LD D++G+IKL+MK ++
Sbjct: 661 ERVENVADYIQEGAVIKVKVLDVDNKGRIKLTMKGIE 697


>gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas perforans 91-118]
 gi|123730263|sp|Q3BRP9|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas perforans 91-118]
          Length = 704

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/696 (50%), Positives = 484/696 (69%), Gaps = 4/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+  + +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF+GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P    +   ++ + 
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNEGMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + + + L  +  + +K  R   I  +KK ++   +       W  G++   F +++
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR ISA+ G+L RTHGS+LF RG+TQAIV+ TLGT  D
Sbjct: 303 YQTMRGSVLSSKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             D +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|255655329|ref|ZP_05400738.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-23m63]
 gi|296451314|ref|ZP_06893054.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP08]
 gi|296880334|ref|ZP_06904297.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP07]
 gi|296259920|gb|EFH06775.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP08]
 gi|296428575|gb|EFH14459.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP07]
          Length = 703

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/698 (42%), Positives = 455/698 (65%), Gaps = 4/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    ++++AGR L +E G+I   + G+ +  Y +++V+         +DG DFFPL+
Sbjct: 1   MFEHKIFKMDFAGRELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGKIPGG+L+RE +P+E  IL SR+IDR IRPLF K ++N+ QV+  V+  
Sbjct: 61  VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P +V+M+ +S AL +S +PF GP     +  ++G +V+NP  ++ ++ S+ L VS
Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVCIGLVDGAFVVNPNAEQREKSSMHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT++A++MVE  A+++ ++V+LDAI+F H E K ++E I  +     KE + ++      
Sbjct: 181 GTKEAIMMVEAGADEVPDEVMLDAILFAHQEIKKIVEFIEGIVAEVGKEKMPVELYHAGE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFE 296
           ++ + + +   + ++ +    EK  R + +D +K++ +++F    E      G+I  V +
Sbjct: 241 EITQLVREFATDKMKKAVQTFEKLERMENMDRVKEETLAHFEETLEDFEDFVGDIEEVLQ 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI  + VR +++ + VR D R  E +R I  + G++ R HGS++F RG TQ + V TLG 
Sbjct: 301 DIIKEEVRKLIVHENVRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGA 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P  
Sbjct: 361 LGDVQKLDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVIPSQ 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A+VCGS+L+L+DAGVPI   VAGIAMGL+K      +L
Sbjct: 421 EEFPYAIRLVSEVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKVAGT+ GITA+QMD+KI GI + I+  AL+QAK GR+HIL EM 
Sbjct: 481 SDIQGMEDHLGDMDFKVAGTEYGITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMR 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +S+ + +L  + P++  M I PD+I++VIG GGK+I  I+++TG K++I+  G V I+
Sbjct: 541 KTISQPKPELSPYAPKIVKMQINPDKIKDVIGPGGKIITKIIDETGVKIDIEQTGEVFIS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
              +  I+ A+E+I +I   PEV K YKG+V ++M+FGAFV     ++GL+HIS ++ ER
Sbjct: 601 GIEIDMIKKAQELINNIVVEPEVGKTYKGKVSRIMNFGAFVEILPGKEGLLHISHIAHER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           VAK  DV+  GD V VK+ + D++G++ LS KV+    
Sbjct: 661 VAKVEDVLNIGDEVEVKVTEIDEKGRVNLSRKVLLPKP 698


>gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
 gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
          Length = 721

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/693 (49%), Positives = 476/693 (68%), Gaps = 2/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T EI +    L LETG +ARQ+DGAV A+   T VLATVV  +   +   FFPLTVNY
Sbjct: 3   KFTKEIAFGDHTLILETGEVARQADGAVFASMNGTQVLATVVGKKDGGENSGFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YAVGKIPGG+ +RE RPTE E LISR+IDR IRPLF + + NE QVI  V+  + E
Sbjct: 63  QEKFYAVGKIPGGFNKREGRPTELETLISRLIDRPIRPLFPEGFCNEVQVIATVLSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP +V+M+A+SAAL LSG+PF GP+  A+V Y +G Y+LNP   E +   LDL V+GT+
Sbjct: 123 VSPDIVAMIASSAALALSGVPFNGPIGAARVGYRDGIYLLNPSRKELEHSKLDLVVAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           +A+LMVE EA +LSED++  AI+FGH   K VI+AI +LA    K       ++    L+
Sbjct: 183 NAILMVESEAKELSEDIMRGAIMFGHEMMKNVIKAIEELAAQAGKTRWDWSPREVDVNLQ 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +S MIK ++  +  I +K  R +++ +LK + ++   +E+   N   I ++F ++++ 
Sbjct: 243 SRVSDMIKHEVEAAYLIKDKQERYQRLAELKDQTITALQAENEELNADVISNIFVELESA 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR  +LD + R+DGRD +TVR IS +  LL+R HGS LF RG+TQAIVV TLG   D Q
Sbjct: 303 TVRNRILDGEPRIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+++G  ++ FM+HYNF P + GE   +G+P RREIGHGRLA+RAI  VLP++  FPY
Sbjct: 363 ILDNITGESKDRFMLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRAIMAVLPESNDFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LR+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD + +L+DI G
Sbjct: 423 VLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL QA  GR++IL  M+  L+E
Sbjct: 483 DEDHLGDMDFKVAGTEHGITALQMDIKIQGITSAIMEQALDQALEGRMYILGVMNNALAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR+  M +  D+IR +IG GG  I+G+++ TG  ++IDD G V++ S  L 
Sbjct: 543 HREELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIDSTGVSIDIDDTGVVQLFSPDLQ 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A++ I+S+    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  
Sbjct: 603 ALEEAQKQIKSLIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQKVD 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            V++EG  + V +   D +G++KL  K   +N 
Sbjct: 663 TVLQEGQEIEVFVAGIDKQGRVKLEWKDKPKNE 695


>gi|21243412|ref|NP_642994.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|81801072|sp|Q8PJ59|PNP_XANAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21108963|gb|AAM37530.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 704

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/696 (50%), Positives = 481/696 (69%), Gaps = 4/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF+GP+  A+V Y NG+Y+LNP + E + S L+L V+GT 
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI  I++L      +P    +   +  + 
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH--SSWNEGEIVSVFEDIQ 299
             + + + + L  +  + +K  R   I  +KK ++   +       W  G++   F +++
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +L  KVR+DGR  +TVR ISA  G+L RTHGS+LF RG+TQAIV+ TLGT  D
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++SG  + +F+ HYNF P + GE  R GAP RREIGHGRLA+R +  V+P   +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+G+DF++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S+ERV K
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             D +KEGD V VK+L+ D +G+I+LS+K V++  G
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEG 698


>gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
 gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
          Length = 703

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/701 (48%), Positives = 473/701 (67%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H     +  + + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFNKHVKTFRYGNQQVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RES+ +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYFERTYAAGKIPGGFFKRESKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YIN  YVLNP   +  +  LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYINDTYVLNPTKHQMHRSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EAN L EDV+L A+++GH + + VI AI++LA M   E     + +  +
Sbjct: 181 GTESAVLMVESEANILPEDVMLGAVVYGHEQMQTVIAAINELASMVNPELWDWKAPETNN 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
            L  ++  +    +  +  I  K  R  ++D+    + +   + E  +  + EI  +F+ 
Sbjct: 241 DLVAKIKDISGSLIAEAFKIRSKQARSAKLDEAWAAVEAALITEETDTLAKNEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A+VVR  +L  + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEAEVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAG+AMGL+ + + F +L+
Sbjct: 421 DFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILTQMQA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +     +L +  PR+  M I PD+IR VIG GG+ IR I  +T  ++NI DDG V IA+
Sbjct: 541 AVEGP-QELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETNTEINIADDGVVTIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    EAA+  I  IT   EV K+Y+GQVVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RV   SD ++ G TV VK L+ D+RG+++LSMK + +   +
Sbjct: 660 RVKNVSDYLQVGQTVTVKALEVDERGRVRLSMKALLEQPEQ 700


>gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
 gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
          Length = 689

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/685 (44%), Positives = 451/685 (65%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVG++PGG+++RE+RP E+ IL SR+IDR IRPLF K  +NE  V+  VM  D +  P
Sbjct: 63  MYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDAV 185
            +  M+ ASAAL +S +P+ GP+ G ++  ING++++NP  ++ +   L++ V+GT+DA+
Sbjct: 123 AICGMIGASAALSISDIPWNGPIAGVRMGRINGEFIVNPTKEQLEATDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           LMVE  A ++ E+ +L+ I+  H E K ++     +     KE  V +SKD  +++ E +
Sbjct: 183 LMVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDMKAKVGKEKRVFESKDVPAEIAEAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q  +++  ++++F   +   N  ++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQESEVRADVLAHFEEIYPD-NLADVNKAFDAMTKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    + Q +D
Sbjct: 302 HMITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY LR
Sbjct: 362 GIGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I PD+IR+VIG GGKVIRGI+++TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDPDKIRDVIGSGGKVIRGIIDETGAKIDIEDDGTVFIASVDQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G+I LS K 
Sbjct: 662 NVGDEIMVKVIEIDKQGRINLSRKD 686


>gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA6140]
          Length = 706

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/702 (47%), Positives = 471/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ER YA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERNYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKR 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 701


>gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           35/02]
 gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI18]
 gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA19]
 gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI2]
 gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 706

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 1   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKR 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 541 AVAGP-QELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 701


>gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica
           ATCC 39073]
 gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica
           ATCC 39073]
          Length = 747

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/719 (44%), Positives = 464/719 (64%), Gaps = 25/719 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M  V    +  AGR L LETGR+A+Q+ GAV+ +YG T+VL T       ++G DFFPLT
Sbjct: 1   MQGVLRKTLVVAGRDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+ER YA GKIPGG+++RE RP+E  IL +R+IDR IRPLF K Y+N+  V+  VM  
Sbjct: 61  VDYEERLYAAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D +  P+V  ++ ASAALMLS +PF GP+    V  I+ + V+NP L+ED + SL+L V+
Sbjct: 121 DQDCPPNVAGIIGASAALMLSAIPFAGPIGAVSVGLIDNRPVINPTLEEDSRSSLNLTVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC------AKEPIVID 233
           GT +A++MVE  A ++ ED++L+ I+ GH E K ++  I++            ++P ++ 
Sbjct: 181 GTANAIMMVEAGAKEVPEDLMLECIMQGHEEIKRIVAFINEFRAEALAMGLAKEKPELVA 240

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIP-----EKYVRCKQIDDLKKKMVSYFSSEHSS--- 285
            +     E  + ++    LR   +        K  R KQ+D  ++++ +           
Sbjct: 241 PQLDPAWESRVREIATPRLREVIYRSRDEKWSKQERDKQLDACREEINNLILEGQEEALA 300

Query: 286 ---WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                 G I  +   I+ ++VR ++L + +R+DGR  E +R I+ +VG+L RTHGS LF 
Sbjct: 301 ANPELPGLIKELITKIEKEIVRRMILTEGIRVDGRTLEEIRPITCEVGVLSRTHGSGLFT 360

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TLG   DEQ +D L   +   +M HYNF P + GE   + AP RREIGHG
Sbjct: 361 RGETQVLTVTTLGPISDEQILDDLGVDESKRYMHHYNFPPYSVGEARPIRAPGRREIGHG 420

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ P++P   +FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI  PVAG+
Sbjct: 421 ALAERALEPMIPSEEEFPYAIRLVSEVLGSNGSTSMGSVCGSTLSLMDAGVPIKAPVAGV 480

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGLVK+ D   IL+DI G ED LG MDFKVAGT  GITA+QMD+KI GI  +I+  AL+
Sbjct: 481 AMGLVKENDQVAILTDIQGLEDALGDMDFKVAGTKKGITALQMDIKIAGIDRSILERALE 540

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+RGRL IL+++   + E R +L  + PR+  + I PD+IR++IG GGK+I+ I+E+TG
Sbjct: 541 QARRGRLFILDKILATIPEPRKELSPYAPRMLTITIDPDKIRDIIGPGGKIIKKIIEETG 600

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--- 639
            +++++DDG V IAS+  A  E A ++I S+T   E  K+Y G+V +V DFGAFV     
Sbjct: 601 VEIDVEDDGRVFIASTDAAAGERALKIIESLTQDVETGKVYNGKVTRVTDFGAFVEVIPR 660

Query: 640 ---CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNT 694
                 ++GLVHISQL+ ERV K  DVV+EGD + VK + FD +G++KLS K  ++++T
Sbjct: 661 VLGMPGKEGLVHISQLANERVEKVEDVVQEGDYILVKAIGFDPQGRLKLSRKEALNEST 719


>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 790

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/695 (46%), Positives = 459/695 (66%), Gaps = 8/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H   IE AGR L +ETGR+A  + GAV   YG+T+VL TVV +R  ++G DFFPLTV+Y
Sbjct: 11  IHERTIEVAGRRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDY 70

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+++RE RPTE  IL +R+ DR IRPLF K YK E QVI  V+  D E
Sbjct: 71  EEKMYAAGKIPGGFIKREGRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQE 130

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           ++P V+S++ ASAALMLS +P+ GPV   ++  I+G+ V+NP   +     LD+ V+GT 
Sbjct: 131 NAPDVLSIIGASAALMLSPIPWAGPVGAVRIGDIDGELVVNPTEHQLIDSKLDMVVAGTA 190

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLE 241
           DAV+MVE EA+++SED  L+A++  H+E K ++    +L ++  KE       ++ ++L+
Sbjct: 191 DAVMMVEGEADEISEDRFLEAVLLAHDEIKRIVAMQHELRELAGKEKWEFTPPEENTELK 250

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVSVFED 297
           +++ + I + L  + F P+K  R    D+LK+ ++++F+     E       E+  +F+ 
Sbjct: 251 QQIEEYIGDRLVSAVFNPDKEQRLAATDELKQDVIAHFTEAPEGEEPVATVREVSEIFDG 310

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +   +VR  +L++  R DGR  + +R+I  + G+L R HGS++F RG TQA+ VVTLGT 
Sbjct: 311 LVKGLVRRTILERSERPDGRRPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLGTT 370

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            +EQ +D L   +   ++ HYNF P + GEV R+  PSRR+IGHG LA R++  VLP   
Sbjct: 371 SEEQLLDGLGIEESKRYLHHYNFPPFSVGEVRRLRGPSRRDIGHGALAERSLLAVLPDED 430

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFII 475
            FPYT+R+VSEI  S+GS+SMA+VCGSSLALMDAGVPI  PVAG+AMGL+   +   + I
Sbjct: 431 VFPYTMRVVSEIVSSNGSTSMASVCGSSLALMDAGVPIRAPVAGVAMGLITDPETGRYQI 490

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  GIT +QMD+K+ GI+  IM  AL+QA+RGRL+IL++M
Sbjct: 491 LTDIQGIEDALGDMDFKVAGTAEGITGIQMDIKVMGITPEIMREALEQARRGRLYILDKM 550

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           + VL++ R ++  + PR+  + I PDQI  VIG GGKVIRGI E TGAK++I+DDGTV I
Sbjct: 551 NAVLAQPRPEMSPYAPRIYRIQIRPDQIGEVIGPGGKVIRGIQEATGAKIDIEDDGTVFI 610

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ++ +      A + I  +T VPEV  I+ G+V  ++  G FV     +DG +HIS+L   
Sbjct: 611 SAVNEESARKAVDTIERMTKVPEVGDIFFGRVKTIIPSGCFVEILPGKDGFLHISELEPY 670

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV    DVV+ G  + V +      GKI LS K +
Sbjct: 671 RVNSVEDVVQVGQELNVVVTGIRPDGKINLSRKAL 705


>gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA 1090]
 gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID24-1]
 gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
 gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           gonorrhoeae FA 1090]
 gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
          Length = 707

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/702 (47%), Positives = 472/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ +    ++  + + LETG IARQ+  AV  + G+TVV   V  ++ +K+GQDFFPL 
Sbjct: 2   MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 62  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V YING YVLNP   E  +  LDL V+
Sbjct: 122 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 182 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  +  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 242 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKR 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 302 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 362 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 422 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++    +L    PR+  M I  D+IR+VIG GG+ IR I  +TG ++NI +DGT+ IA+
Sbjct: 542 AVAGP-QELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
           ++    +AA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ E
Sbjct: 601 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV    D ++ G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 661 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSIKALLDAPVRE 702


>gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 701

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/702 (48%), Positives = 475/702 (67%), Gaps = 6/702 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++  + + LETG IARQ+ GAV    G+TVVL  V  ++ +K GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGSQTVTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y++G YVLNP   + + S LDL V+
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA  L EDV+L A+++GH + + VI AI++LA     E     + +  +
Sbjct: 181 GTEQAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIRAINELADEVNPEVWDWKAPEPNA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
           +L  ++ ++  + +  +  I  K  R  +I +    + +   +E +      EI  +F+ 
Sbjct: 241 ELIAKVKEIAGDTIAEAFKIRSKQARGAKIAEAWAAVQAALITEDTDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR I+ Q  +L RTHGS+LF RG+TQA+ V TLGT+
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGE  RMGAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLAVLPEPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL +M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMKE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +     +L +  PR+  M I  D+IR+VIG GG+ IR +  +TG ++NI+DDGT+ IA+
Sbjct: 541 AVQGP-QELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDDGTITIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
            S   +EAAR+ I  IT   EV K+Y G VVK++D   GA V     + GLVHISQ++ E
Sbjct: 600 VSADAVEAARKRIEEITAEVEVGKVYDGTVVKILDNNVGAIVDVLPGKGGLVHISQIAHE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV   +D +K G  V VK L+ DDRG+++LS+K +     + 
Sbjct: 660 RVKDVNDYLKVGQVVKVKALEVDDRGRVRLSIKALIDAPAEE 701


>gi|332685840|ref|YP_004455614.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
           ATCC 35311]
 gi|332369849|dbj|BAK20805.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
           ATCC 35311]
          Length = 713

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/703 (43%), Positives = 459/703 (65%), Gaps = 14/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTSWGGRPLQVEVGQLAKQANGAVLIRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGK+PGG+++RE RP+E+  L +R+IDR IRP+F++ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKVPGGFIKREGRPSESATLTARLIDRPIRPMFTEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF GP+ G +V  I+G+YVLNP +++  Q  +DL V+
Sbjct: 120 EQDCSPAMAAMLGSSLALTISDIPFNGPIAGVEVGRIDGEYVLNPTVEQSNQSDIDLSVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE  +L A++FGH   K ++    ++ +   KE + I   +   
Sbjct: 180 GTKEAINMVESGAEEVSESDMLGALLFGHAAIKELVAFQEEIRQAVGKEKMTIQLLQVDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV----SYFSSEH-------SSWN 287
            L++ +     E ++ +    EK  R + I  +K+++       FS +            
Sbjct: 240 DLKKGIYTDYYETMKRAVMTEEKLAREENIQSVKEEVRNNYSEKFSEQEYEAQLSTEEQL 299

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             E+  + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQ
Sbjct: 300 NNEVKQIVEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQ 359

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           A+   TL    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  R
Sbjct: 360 ALSACTLAPLGEHQIIDGLGIEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGER 419

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  ++P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV
Sbjct: 420 ALSQIIPSPEAFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLV 479

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            DG+++ IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL+QAK+ 
Sbjct: 480 SDGENYTILTDIQGLEDHLGDMDFKVAGTKQGITALQMDIKIEGITEQILKEALEQAKKA 539

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+ ILNE++  L+E R +L ++ P++E++ I P +I++VIG GG+ I GI+E+TG K++I
Sbjct: 540 RMEILNELTSTLAEPRNELSQYAPKIEMVKIDPSKIKDVIGKGGETINGIIEETGVKIDI 599

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D +G V IASS    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +D LV
Sbjct: 600 DQEGNVSIASSDDIMIKRAIKIIEDLTKDVKVGQVYLGKVVRIEKFGAFVNLIKGKDALV 659

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           HISQL+ ERV    DVVK GD + VK+ + D +G+I  S K +
Sbjct: 660 HISQLANERVKNVEDVVKVGDEILVKVTEIDKQGRINASRKAL 702


>gi|257867115|ref|ZP_05646768.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC30]
 gi|257877194|ref|ZP_05656847.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC20]
 gi|257801171|gb|EEV30101.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC30]
 gi|257811360|gb|EEV40180.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC20]
          Length = 720

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/697 (43%), Positives = 461/697 (66%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 16  MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 74

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 75  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 134

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 135 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 194

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +   +  +
Sbjct: 195 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEVVAAVGKPKMEVKLLQVDA 254

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+     + ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 255 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 314

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 315 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 374

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 375 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 434

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 435 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 494

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 495 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILN 554

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  L+  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 555 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 614

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 615 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 674

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD + VK+ + D +G++ LS K +
Sbjct: 675 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 711


>gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           frigidimarina NCIMB 400]
 gi|122300513|sp|Q086G7|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 698

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/692 (48%), Positives = 471/692 (68%), Gaps = 2/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E+    + LETG IARQ+D AVLA+ G+T VL TVV  +     +DFFPLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+E+E LI+R+IDR IRPLF   +KNE QVII V+  D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            +  P +VSM+  SAAL +SG+PF GP+  A+V YIN +YVLNP +D+    SL+L V+G
Sbjct: 121 PQIEPDIVSMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T+ AVLMVE EA  L+E+++L A+ +GH++ + V++AI++      K      +      
Sbjct: 181 TKAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L  ++ ++ +  +  +  I  K  R  Q+  +K    +   +E+   +  E+ ++   ++
Sbjct: 241 LVAKIKELAEAGMTEAYQIEVKQDRYVQVGIVKAAAKAALVAENPDVDTREVDNLLGSLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  ++  K R+DGR+ + +R +S   G+L RTHGSSLF RG+TQA+V  TLGT  D
Sbjct: 301 KSVVRGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DS+ G + N FM+HYNF P + GE   +G+P RREIGHG+LA R ++ V+P   +F
Sbjct: 361 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI
Sbjct: 421 PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +ALQQA   R+HILN M + +
Sbjct: 481 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R  +    PR+  + I P++IR+VIG GG VIR + E+TG  + +DD+GTVKIASS+
Sbjct: 541 GTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSN 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A   I  IT   EV +IY G+V++++DFGAFV+    +DGLVHISQ+S ERVA 
Sbjct: 601 GEATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD ++    V VK+++ D +G+++LS+K   
Sbjct: 661 VSDHLEMNQEVAVKVMEVDRQGRVRLSIKEAQ 692


>gi|262401655|ref|ZP_06078221.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
 gi|262352072|gb|EEZ01202.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
          Length = 709

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/691 (49%), Positives = 478/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI+ V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K SD + EG  V VK+L+ D +G+++LSMK
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691


>gi|56460072|ref|YP_155353.1| polynucleotide phosphorylase/polyadenylase [Idiomarina loihiensis
           L2TR]
 gi|81363045|sp|Q5QYE1|PNP_IDILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56179082|gb|AAV81804.1| Polynucleotide phosphorylase [Idiomarina loihiensis L2TR]
          Length = 716

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/688 (49%), Positives = 471/688 (68%), Gaps = 2/688 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T + ++    + LETG IARQ+  +VLA+  +T VL TVV  +  ++GQ+FFPLTV
Sbjct: 1   MNPITKQFQYGQHTVTLETGVIARQATASVLASIDDTTVLVTVVAKKEAREGQNFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+TYA GKIPGG+ +RE RP+ENE L  R+IDR IRPLF   + NE QV+  V+  +
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSENETLTCRLIDRPIRPLFPDGFMNEVQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            + +P +V+++  SAAL +SG+PF GP+  A+V  +N +YVLNP  DE + S LDL V+G
Sbjct: 121 PQINPDIVALIGTSAALSISGVPFAGPIGAARVGVVNDEYVLNPTADELENSKLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLMVE EA  LSED +L A+++GH   + VI+AI++      KE     +    + 
Sbjct: 181 TDKAVLMVESEAQLLSEDQMLGAVMYGHEAMQDVIKAITEFTAEAGKEKWDWQAPAKDES 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++ ++ ++ +  +    +K  R  ++D +K++MV   ++E  + +  E   +F D++
Sbjct: 241 LQTKIRELAEQGIGEAYRTTDKAERKGKLDQVKEQMVEKLTAEDENVDLEESGKIFHDLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + +VR+ ++  + R+DGRD + VR IS   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 SDIVRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L+G   N FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +F
Sbjct: 361 AQMIDELTGMNTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGIQAVMPSHDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+GD  ++LSDI
Sbjct: 421 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG   GITA+QMD+KI GI+ +IM  AL QAK  RLHIL  M + +
Sbjct: 481 LGDEDHLGDMDFKVAGNTDGITALQMDIKIDGITRDIMESALAQAKSARLHILKVMDEAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R +L  + PR   + I  D+I++VIG GG VIR + E T   + I DDGT+K+A+S 
Sbjct: 541 GGHREELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKVAASD 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A+ +AA E I+ +T   EV KIY+G+V +++DFGAFV     +DGLVHISQ++ ERV  
Sbjct: 601 QADADAAIEKIKQLTANVEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVND 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            ++ +K GD V VK+L+ D +G+++LSM
Sbjct: 661 VNEYLKVGDVVPVKVLEIDRQGRVRLSM 688


>gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Thiomonas sp. 3As]
          Length = 719

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/692 (47%), Positives = 480/692 (69%), Gaps = 2/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+      +W    + +ETG IARQ+ GAVL    +TVVLATVV  R+ K GQDFFPLT
Sbjct: 1   MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE RP+ENE L SR+IDR IRPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + +++A+SAAL +SGLPF GPV  A+V Y+NG YVLNP   E     L+L V+
Sbjct: 121 NPEVEADIPALLASSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+ AVLMVE EA+QLSE+V+L+A++FGH + +  I AI +L +   K      + +   
Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKDQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L + +  +  +D+R +  I +K  R + + +   K+ +  +    + +  ++  +  D+
Sbjct: 241 ALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGIAADAAKVDGILFDM 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +A++VR  +L  + R+DGRD+ TVR +S +  +L RTHGS+LF RG+TQA+ V TLGT +
Sbjct: 301 EARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQ 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G  R+ F++HYN  P ATGE  R+G P RREIGHGRLA+RA+  VLP+   
Sbjct: 361 DAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKED 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSE+TES+GSSSMA+VCG  LAL+DAGVP+   VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+ SG+TA+QMD+KI GI+  IM +AL QA+  R+HIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQA 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R ++ +F PR+  + I P++IR+VIG GG  IR + E+TG ++NI +DGT+ IAS+
Sbjct: 541 VGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAST 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +   A++ I  +T   EV ++Y G VVK++DFGA V+    +DGL+HISQ++ ER+ 
Sbjct: 601 DADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERIN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K SD ++EG  V VK+++ DD+G+ +LS+K +
Sbjct: 661 KVSDFLQEGQKVRVKVIETDDKGRFRLSIKAL 692


>gi|295397816|ref|ZP_06807881.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294973951|gb|EFG49713.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 702

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/702 (43%), Positives = 453/702 (64%), Gaps = 9/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    ++ WAGRPL +E G++A+Q++ AVL  YG+TVVL  VV  +  K GQDFFPL 
Sbjct: 1   MEEKQVFKMNWAGRPLSIEYGQVAKQANAAVLVRYGDTVVLTAVVGAKEAKPGQDFFPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGKIPGGY++RE RP+E+  L +R+IDR IRP+F + + NE QVI  V+  
Sbjct: 61  VNYEEKMYSVGKIPGGYIKREGRPSEHATLTARLIDRPIRPMFDEGFTNEVQVINTVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + SP + +M  +SAAL +S +PF+GP+ G  V  +NG +V+NP +++  Q  L+L V+
Sbjct: 121 DPDCSPEMAAMFGSSAALTISDIPFDGPIAGVNVGRVNGDFVINPTVEQQAQSDLELIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           G++DA+ MVE  A +LSE  +L+A++FGH   + +     ++ +   +E + +  +   +
Sbjct: 181 GSKDAINMVESSAAELSETEMLEALMFGHTSIRELCYFQDEIREKIGQEKMDVQLNTPDN 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L  E++    + +  +    +K  R + I+ +K  ++ ++S  ++   +      ++  
Sbjct: 241 VLVAEVTAQYNQQMVEAIQTFDKLEREENIEAVKAAIIDHYSELYAEHEDVVTLMDQVRQ 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   ++ K VR ++ D KVR DGR  + +R ++++VGLL RTHGS LF RG TQA+ V T
Sbjct: 301 IANQLEYKEVRRLITDDKVRPDGRKIDEIRPLASEVGLLPRTHGSGLFTRGQTQALSVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    +EQ +D L+G     FM HYNF   + G   R G+P RREIGHG L  RA++ VL
Sbjct: 361 LAPLSEEQRIDGLAGDVTQRFMHHYNFPQYSVGSTGRYGSPGRREIGHGALGYRALNEVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
           P    FPY +R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGL+ D D+ 
Sbjct: 421 PSEEDFPYAIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLIMDEDEE 480

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +L+DI G EDHLG MDFKVAGT++GITA+QMD+KI GI+E I+  AL QA + R+ I
Sbjct: 481 NYTVLTDIQGLEDHLGDMDFKVAGTENGITALQMDIKIKGITEQILREALDQAHKARVEI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L  ++  +   R +L  + P++E M I PD I+ VIG GG  I  I+++TG K++ID +G
Sbjct: 541 LGHLATAIDAPRAELSPYAPKIEQMQIDPDDIKVVIGKGGDTINKIIDETGVKIDIDQEG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS + A I+ A+E+I  +T   +  ++Y G V ++  FGAFV     +DGLVHISQ
Sbjct: 601 GVNIASDNAAMIKRAKEIIAELTLKVQAGEVYVGTVKRIEKFGAFVEIAKGKDGLVHISQ 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           L  ER     DVV   + V VK+ + D+RG+I L+MK +D  
Sbjct: 661 LQEERTNNVEDVVSMDEKVRVKVTEIDNRGRINLTMKGLDAE 702


>gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
 gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
          Length = 699

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/697 (49%), Positives = 476/697 (68%), Gaps = 4/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++ +VL T G   VL  VV   + K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-SVLITMGGVSVLVAVVAQPTAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+Y+LNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIAGARVGLINGEYILNPNHEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   +      
Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGATESTWVAPTKND 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + ++ F  E        E+  +FE+
Sbjct: 242 ALLEQLKTAFEAKISEAYTIAVKQERYAALDALHAEAIAQFVPESDETGIADEVNELFEE 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY LR+VS+ITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVLRVVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFTGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P   ++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFAVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAANAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q++
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQSS 698


>gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1]
 gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter sp. ADP1]
          Length = 697

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/695 (50%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIIRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL ++G PF GP+ GA+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMDADIAAMLGASAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  ++AI + A      E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPTKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 TLLEQLKAAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAYAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARAEISAHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ERV
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERV 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  SDV+KEG  V V++ D D+RG+IKLSMK ++Q
Sbjct: 662 ANVSDVLKEGQDVKVQVADVDNRGRIKLSMKDIEQ 696


>gi|325568458|ref|ZP_08144825.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158227|gb|EGC70380.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 715

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/697 (43%), Positives = 461/697 (66%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 11  MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 69

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 70  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 129

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 130 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 189

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ A+ MVE  A ++SE+ +L A++FG +  + ++    ++     K  + +   +  +
Sbjct: 190 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIQELVAFQEEVVAAVGKPKMEVKLLQVDA 249

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+     + ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 250 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 309

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 310 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 369

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 370 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 429

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 430 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 489

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 490 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALSQAKKARMEILN 549

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  L+  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 550 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 609

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV+V  FGAFV+    +DGLVHISQL+
Sbjct: 610 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLA 669

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD + VK+ + D +G++ LS K +
Sbjct: 670 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 706


>gi|229547506|ref|ZP_04436231.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX1322]
 gi|229548082|ref|ZP_04436807.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           ATCC 29200]
 gi|255970737|ref|ZP_05421323.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T1]
 gi|256618176|ref|ZP_05475022.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ATCC 4200]
 gi|256761105|ref|ZP_05501685.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T3]
 gi|256854742|ref|ZP_05560106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T8]
 gi|256958346|ref|ZP_05562517.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DS5]
 gi|256962906|ref|ZP_05567077.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           HIP11704]
 gi|257078344|ref|ZP_05572705.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           JH1]
 gi|257091307|ref|ZP_05585668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           CH188]
 gi|294780196|ref|ZP_06745568.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           PC1.1]
 gi|307270429|ref|ZP_07551730.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4248]
 gi|307273930|ref|ZP_07555142.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0855]
 gi|307276709|ref|ZP_07557826.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2134]
 gi|312905366|ref|ZP_07764481.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0635]
 gi|312953165|ref|ZP_07772012.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0102]
 gi|229306768|gb|EEN72764.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           ATCC 29200]
 gi|229307348|gb|EEN73335.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX1322]
 gi|255961755|gb|EET94231.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T1]
 gi|256597703|gb|EEU16879.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ATCC 4200]
 gi|256682356|gb|EEU22051.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T3]
 gi|256710302|gb|EEU25346.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T8]
 gi|256948842|gb|EEU65474.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DS5]
 gi|256953402|gb|EEU70034.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           HIP11704]
 gi|256986374|gb|EEU73676.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           JH1]
 gi|257000119|gb|EEU86639.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           CH188]
 gi|294452739|gb|EFG21169.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           PC1.1]
 gi|306506608|gb|EFM75761.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2134]
 gi|306509409|gb|EFM78467.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0855]
 gi|306513207|gb|EFM81838.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4248]
 gi|310628908|gb|EFQ12191.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0102]
 gi|310631390|gb|EFQ14673.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0635]
 gi|315031249|gb|EFT43181.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0017]
 gi|315036532|gb|EFT48464.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0027]
 gi|315152914|gb|EFT96930.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0031]
 gi|315157487|gb|EFU01504.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0312]
 gi|315162544|gb|EFU06561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0645]
 gi|315167175|gb|EFU11192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1341]
 gi|315171031|gb|EFU15048.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1342]
 gi|315173459|gb|EFU17476.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1346]
 gi|315578552|gb|EFU90743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0630]
 gi|323478998|gb|ADX78437.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           62]
 gi|327536187|gb|AEA95021.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           OG1RF]
 gi|329571128|gb|EGG52834.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1467]
          Length = 704

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/704 (43%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|29377522|ref|NP_816676.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           V583]
 gi|227554487|ref|ZP_03984534.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           HH22]
 gi|257088180|ref|ZP_05582541.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           D6]
 gi|75541451|sp|Q82ZJ2|PNP_ENTFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29344989|gb|AAO82746.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           V583]
 gi|227176397|gb|EEI57369.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           HH22]
 gi|256996210|gb|EEU83512.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           D6]
 gi|315027681|gb|EFT39613.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2137]
 gi|315573355|gb|EFU85546.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0309B]
 gi|315581213|gb|EFU93404.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0309A]
          Length = 704

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/704 (43%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + S   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFSEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|227550843|ref|ZP_03980892.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           TX1330]
 gi|293379257|ref|ZP_06625403.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           PC4.1]
 gi|227179941|gb|EEI60913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           TX1330]
 gi|292642053|gb|EFF60217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           PC4.1]
          Length = 736

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/702 (43%), Positives = 457/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R + I+ +K  +   ++      E       E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729


>gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
 gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/678 (49%), Positives = 471/678 (69%), Gaps = 2/678 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           IARQ+  AV+    +T V  T V  + +K+GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP E E L++R+IDR +RPLF + + NE Q+I  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V +IN QYVLNP  DE + S LDL V+GT  AVLMVE EA  LSE+ +L
Sbjct: 122 VPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPE 260
            A++FGH++ + VI+ I++L K   KE      +  +  L + ++ + +  +  +  I E
Sbjct: 182 GAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALHDRVAALAESRMGDAYRITE 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q+D +K++++    +E  + +  E+  +   ++ +VVR+ ++  + R+DGR+ +
Sbjct: 242 KQERYAQVDLIKEEVIGALVAEDENVDVSEVSDILAHLEKQVVRSRVIRGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G   + F+ HYNF
Sbjct: 302 MVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P  A+FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQAEFPYTVRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSDILGDEDHLGDMDFKVAGSRDGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI+  IM +AL QAK  RLHIL+ M + ++  R ++ EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQAINSPREEISEFAPRIYTIRINP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLKAKEAIRRIEDITAEVEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY+G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQ 661

Query: 681 GKIKLSMKVVDQNTGKPI 698
           G+I+LSMK        P+
Sbjct: 662 GRIRLSMKEAVAGEEAPV 679


>gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
          Length = 706

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/691 (45%), Positives = 460/691 (66%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D H   +EWAGR L +E G++A+Q++GAVL  YG+TVVL+T    +  K   DFFPLTVN
Sbjct: 4   DKHVYSLEWAGRKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPK-NLDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++N+ QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PF GP+ G  V  I+G++++NP +D+ ++  + L V+GT
Sbjct: 123 NCSSEMAAMFGSSLALSVSDIPFGGPIAGVSVGRIDGEFIINPSVDQAEKSDISLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+ +L+AI+FGH E K +I    ++A    KE + I   +    L
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIASEIGKEKMEIVLYQVDQDL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
           E E+  + ++D+  +  + EK+ R   I  +K+++ + +  E +  ++  +I  + + I 
Sbjct: 243 EAEVRGICEKDMIQAIQVQEKHAREAAIKAVKEQITAKYEGEEADDDKLKQIRQILDKIV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ + KVR DGR  + +R +S++VGLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KAEVRRLITEDKVRPDGRGLDVIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+ P++P    F
Sbjct: 363 VQILDGLGIEEEKRFMHHYNFPNFSVGETGPIRGPGRREIGHGALGERALEPIIPSEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK+GR+ IL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKKGRMQILDSMLSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R +L E+ P++ +M+I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S  
Sbjct: 543 GQPRKELSEYAPKILMMSINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 EEMNQKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK+ + D +G++ LS K V
Sbjct: 663 VEDVVSIGDELLVKVTEIDKQGRVNLSRKAV 693


>gi|257873450|ref|ZP_05653103.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC10]
 gi|257807614|gb|EEV36436.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC10]
          Length = 705

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/697 (43%), Positives = 461/697 (66%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YAVGK+PGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAVGKVPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +   +  +
Sbjct: 180 GTKKAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEVVAAVGKPKMEVKLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+     + ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDGYYQTMKTAVMTEEKLAREDEIDKVKDTVKEVYAEKFAGHEEEAQFLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R ++++VGLL R HGS LF RG TQA+   T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PDETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILN 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  L+  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTLAAPREELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIQKAIKIIEELTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERV K  DVVKEGD + VK+ + D +G++ LS K +
Sbjct: 660 NERVNKVEDVVKEGDEILVKVTEIDKQGRVNLSRKAL 696


>gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
 gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
          Length = 719

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/698 (49%), Positives = 476/698 (68%), Gaps = 2/698 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T EI +    L LETG IARQ+DGAVLA+   T VL TVV  +   +G DFFPLTVNY
Sbjct: 3   KITKEIAFGDHTLVLETGEIARQADGAVLASMNGTQVLVTVVGKKEGGEGNDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YAVGKIPGG+ +RE RP+ENE LISR+IDR IRPLF   + NE Q+I  V+  + E
Sbjct: 63  QEKFYAVGKIPGGFNKREGRPSENETLISRLIDRPIRPLFPDNFTNEVQIIATVLSLNPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
            S  +++M+ ASAAL +SG+PF GP+  A+V Y +G Y+LNP     ++  LDL V+GT+
Sbjct: 123 ISSDIIAMIGASAALAISGVPFNGPIGAARVGYKDGVYLLNPSRKALEESKLDLVVAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+LMVE EA +LSEDV+  AI+FGH   K VI+AI +LA    K      +    + L+
Sbjct: 183 DAILMVESEAKELSEDVMRGAIMFGHEMMKSVIKAIEELAGEAGKARWDWAAPAVDENLQ 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++ + K D+  +  I +K  R +++  LK++ ++   +E+       I ++F D++  
Sbjct: 243 VRIADIAKHDVEAAYLIKDKQERYQRLGVLKEQTIAALLAENEELKADVIGNMFGDLERA 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VRT +LD + R+DGRD +TVR I+ +  LL+RTHGS LF RG+TQAIVV TLG   D Q
Sbjct: 303 TVRTRILDGEPRIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++   ++ FM+HYNF P + GE   +G+P RREIGHGRLA+RA+  VLP+ + FPY
Sbjct: 363 MLDGINVESKDRFMLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVLPEASAFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            LR+VSEITES+GSSSMATVCG+SLALMDAGVP+  PVAG+AMGL+K+GD F +L+DI G
Sbjct: 423 VLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRFAVLTDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI+  IM  AL+QA  GR+HIL  M+  L+E
Sbjct: 483 DEDHLGDMDFKVAGTEQGITALQMDIKITGITSEIMEQALEQALAGRIHILGIMNNALAE 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  PR+  M +  D+IR +IG GG  I+G++E TG  ++IDD G V++ S  + 
Sbjct: 543 HREELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDTGVVQLFSPDMD 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +E A++ I+++    EV + Y+G+V K++DFGAF++    +DGL+HISQ+  +R  K  
Sbjct: 603 ALEEAQKQIKALIAEVEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQKVE 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           DV+KEG  + V +   D +G++KL  K   Q    P+ 
Sbjct: 663 DVLKEGQEIEVFVAGVDKQGRVKLEWKDKPQTEVAPVA 700


>gi|315028235|gb|EFT40167.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4000]
          Length = 704

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/704 (43%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICSGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           thermocellum ATCC 27405]
 gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
 gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           ATCC 27405]
 gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
          Length = 700

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/697 (41%), Positives = 447/697 (64%), Gaps = 7/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  +E AGR L +ETG++A+ ++G+VL  YG+TVVL+T     + ++G DFFPL+V+Y+
Sbjct: 3   KTFSMELAGRTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE +P+E  IL +R+IDR +RPLF K  +N+  ++  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +++ +S A+ +S +PF GPV    +  I+G+ ++NP   + +   + + ++GT++
Sbjct: 123 SPELAALLGSSIAVSISDIPFNGPVGAVILGLIDGEVIINPTEKQKEISQMYVTLAGTRN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            ++M+E  AN++ ++V+LDAI  GH E K +++ I  + K   K     +S +   ++  
Sbjct: 183 KIVMIEAGANEVPDEVMLDAIKKGHEEIKKIVDFIDGIVKEVGKPKFEYESAEVPEEIFN 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +R +    +K VR K IDDL K++  +F+          I      ++ KV
Sbjct: 243 AVREYAYDKMREAVLAVDKQVRDKNIDDLTKEITEHFAEVFPEMEPA-IKEAIYKLEKKV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L++  R+DGR  + +R +SA+VGLL R HGS LF RG TQ +  VTLG   D Q 
Sbjct: 302 VREYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPYT
Sbjct: 362 LDGIDTEETKRYMHHYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFIILSDI 479
           +R+VSE+  S+GS+S  +VCGS+LALMDAGVPI KPVAGI+ GLV D    D F+   DI
Sbjct: 422 IRVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFMDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN-EMSKV 538
            G ED  G MDFKVAGT  GITA+Q+D+KI G++E I+  A +  ++GRL+I++  + K 
Sbjct: 482 QGIEDFFGDMDFKVAGTKDGITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLLKA 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E R Q+ ++ P++    I PD+IR VIG GGK+I  I+++TG K++I+DDG V I SS
Sbjct: 542 IPEPRKQMSKYAPKIISTTINPDKIREVIGPGGKMINKIIDETGVKIDINDDGRVYIFSS 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            +   + AR MI +I    E  +++ G+V++V  FGAFV F   ++GLVHIS+L  +RV 
Sbjct: 602 DIQAGKRARSMIEAIAKDIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKRVE 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +  D+V+ GD + VK+++ D +G++ LS K   ++  
Sbjct: 662 RVEDIVRVGDQILVKVIEIDKQGRVNLSRKDAMEDEW 698


>gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 1313]
          Length = 700

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/697 (41%), Positives = 447/697 (64%), Gaps = 7/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  +E AGR L +ETG++A+ ++G+VL  YG+TVVL+T     + ++G DFFPL+V+Y+
Sbjct: 3   KTFSMELAGRTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE +P+E  IL +R+IDR +RPLF K  +N+  ++  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +++ +S A+ +S +PF GPV    +  I+G+ ++NP   + +   + + ++GT++
Sbjct: 123 SPELAALLGSSIAVSISDIPFNGPVGAVILGLIDGEVIINPTEKQREISQMYVTLAGTRN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            ++M+E  AN++ ++V+LDAI  GH E K +++ I  + K   K     +S +   ++  
Sbjct: 183 KIVMIEAGANEVPDEVMLDAIKKGHEEIKKIVDFIDGIVKEVGKPKFEYESAEVPEEIFN 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +R +    +K VR K IDDL K++  +F+          I      ++ KV
Sbjct: 243 AVREYAYDKMREAVLAVDKQVRDKNIDDLTKEITEHFAEVFPEMEPA-IKEAIYKLEKKV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +L++  R+DGR  + +R +SA+VGLL R HGS LF RG TQ +  VTLG   D Q 
Sbjct: 302 VREYILEEGRRVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPYT
Sbjct: 362 LDGIDTEETKRYMHHYNFPGFSVGEAKSSRGPGRREIGHGALAERALEPVIPSEEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFIILSDI 479
           +R+VSE+  S+GS+S  +VCGS+LALMDAGVPI KPVAGI+ GLV D    D F+   DI
Sbjct: 422 IRVVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDENNPDRFVTFMDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN-EMSKV 538
            G ED  G MDFKVAGT  GITA+Q+D+KI G++E I+  A +  ++GRL+I++  + K 
Sbjct: 482 QGIEDFFGDMDFKVAGTKDGITAIQVDIKIDGLTEEIIKQAFELTRKGRLYIIDNVLLKA 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E R Q+ ++ P++    I PD+IR VIG GGK+I  I+++TG K++I+DDG V I SS
Sbjct: 542 IPEPRKQMSKYAPKIISTTINPDKIREVIGPGGKMINKIIDETGVKIDINDDGRVYIFSS 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            +   + AR MI +I    E  +++ G+V++V  FGAFV F   ++GLVHIS+L  +RV 
Sbjct: 602 DIQAGKRARSMIEAIAKDIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKRVE 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +  D+V+ GD + VK+++ D +G++ LS K   ++  
Sbjct: 662 RVEDIVRVGDQILVKVIEIDKQGRVNLSRKDAMEDEW 698


>gi|255974311|ref|ZP_05424897.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T2]
 gi|255967183|gb|EET97805.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T2]
          Length = 704

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/704 (43%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++EI+ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEIIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
 gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
          Length = 703

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/692 (47%), Positives = 460/692 (66%), Gaps = 5/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   VE +     +K+ TG++A+Q+ GAV+ + G+T+VL TVV  +  K GQDFFPLTV
Sbjct: 3   FNEKCVEAQVGNMNVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKPGQDFFPLTV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NY E+TYA GKIPG + +RE RP+E+E LI R+IDR IRPLF + Y  +TQV+  V+  +
Sbjct: 63  NYTEKTYAGGKIPGSFFKREGRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISAE 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            +  P ++SM+ ASAALM+S +PFEGP+ G +V  ++G+ + NP  ++ +   L++ V+ 
Sbjct: 123 EDHDPAILSMIGASAALMISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDLEIVVAA 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
            +DA+ MVE EA+ +SE+ +L+A+ F  +  + ++ A  +LA+        +      + 
Sbjct: 183 GKDAIFMVEGEADFVSEEDLLEAVFFAKDAVQGILAAQEELARQVGVAKREVAPLVVDEA 242

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++  +  + +  +  I  K  R   +  +K+++V+  + E    +  EI     DI+
Sbjct: 243 LKAKVKALAFDRIAQAFKIKAKQERYAAVAQIKEEVVAALAEEFEGRD-KEIKGFIGDIE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              +R  +L+  +R+DGRD++TVR I+ + GLL R HGS+LF RG+TQ +   TLGT +D
Sbjct: 302 YDRMRHDVLETGIRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGTSQD 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +DSL G  R  FM+HYNF P + GE S   AP RREIGHG LA RAI  +LP    F
Sbjct: 362 EQRMDSLYGEYRKKFMLHYNFPPFSVGETSFRLAPGRREIGHGMLAERAISAILPNHDDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIV+E  ES+GSSSMATVCG  L+LMDAGVP+  PVAGIAMGL+K+G+   IL+DI
Sbjct: 422 PYTIRIVAETLESNGSSSMATVCGGCLSLMDAGVPVKAPVAGIAMGLIKEGEKVAILTDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  G+TA+QMD+KIGG+S+ IM  AL+QAK GRLHIL +M++ L
Sbjct: 482 LGDEDHLGDMDFKVAGSADGVTALQMDIKIGGVSKEIMQQALKQAKEGRLHILGKMAQCL 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--GTVKIAS 597
           +  R ++  F PR+  + I PD+IR+VIG GGK IR I E TG  ++ID D  G + IAS
Sbjct: 542 AAPREEMSAFAPRITTIWIKPDRIRDVIGTGGKTIRSITEATGVMIDIDSDNSGKINIAS 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A  +AA +MIR +TD  E  K+Y G V K+M+FGAFV      DGLVHIS+L   RV
Sbjct: 602 SDKAACDAAIQMIRGLTDEVEEGKLYMGTVKKIMEFGAFVEVLPGTDGLVHISELDETRV 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +D++ EGD V VK +  D +GKIKLS K 
Sbjct: 662 KNVTDILNEGDKVLVKCIGVDKQGKIKLSRKA 693


>gi|172057841|ref|YP_001814301.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium
           sibiricum 255-15]
 gi|226702652|sp|B1YI57|PNP_EXIS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171990362|gb|ACB61284.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium
           sibiricum 255-15]
          Length = 739

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/691 (46%), Positives = 449/691 (64%), Gaps = 5/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   E  GRPL +E G++A+Q++GA L  YGET VLATVV  +  KD  DFFPLTVNY
Sbjct: 5   KQTFSTELGGRPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKD-LDFFPLTVNY 63

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPGG+L+RE RP EN IL SR+IDR IRPLF   ++++ QV   V+  D +
Sbjct: 64  EEKLYAAGKIPGGFLKREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDED 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           +SP V +M+ AS AL +S +PF+GP+ G  +  +NG++++NP + +  +  +DL V+GT+
Sbjct: 124 NSPEVAAMIGASIALSISDIPFDGPIAGVTIGRVNGEFIINPTMSQASESDIDLQVAGTK 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AV MVE  A ++SE  +L+AI+ GH+  K +I    ++     +E        F + L 
Sbjct: 184 HAVNMVEAGAKEVSEQAMLEAILLGHDVIKELIAFQEEIVAAVGQEKFAYTVASFDETLV 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--SWNEGEIVSVFEDIQ 299
             +      ++  +  + EK  R   I+++  K +  ++++ S       E+  V     
Sbjct: 244 NRLKAEALAEVTTAVQVEEKQARDLAINEVISKYIDQYAADDSITEAQLAEVSGVLNKFV 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ + KVR DGR    +R + +++GLL R HGS LF RG TQ + V TLG   D
Sbjct: 304 KTEVRRLITEDKVRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L       FM HYNF P + GE   M AP RREIGHG L  RA+ PVLP    F
Sbjct: 364 AQIIDGLGLKAEKRFMHHYNFPPFSVGEARPMRAPGRREIGHGALGERALLPVLPSETDF 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GSSS A++CGS LA+MDAGVP+  PVAGIAMGL+K+G+++ IL+DI
Sbjct: 424 PYTIRLVSEVLESNGSSSQASICGSILAMMDAGVPLKAPVAGIAMGLIKEGENYSILTDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMDMKIGGI+  I+  AL+QA+ GRLHIL  M+ V+
Sbjct: 484 QGMEDHLGDMDFKVAGTKDGVTALQMDMKIGGITRQILEEALEQARLGRLHILEHMNSVI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R++L ++ P++  + I PD+IR+VIG GGKVI GI+++TG K++ID DGTV IAS+ 
Sbjct: 544 AEPRVELSKYAPKIVTLKINPDKIRDVIGPGGKVINGIIDETGVKIDIDQDGTVFIASTD 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I  AR++I  I     + + + G V +V  FGAFV     +D LVHIS+L+ ERV +
Sbjct: 604 QDGINHARQLIEDIVREVVIGEEFDGTVRRVEKFGAFVELFKGKDALVHISELALERVGQ 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           T DVVK GD + V++ + DD+G++  S KV+
Sbjct: 664 TEDVVKLGDKLKVRVTEVDDKGRVNASHKVL 694


>gi|261212242|ref|ZP_05926528.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
 gi|260838850|gb|EEX65501.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
          Length = 709

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/699 (48%), Positives = 481/699 (68%), Gaps = 3/699 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG +ARQ+  AV+AT  +T V  +VV  +    GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   + NE QVI+ V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + +  P ++SM+  SAAL +SGLPF GP+  A+V +I+GQ VLNP   E  Q  LDL V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA  L+E+ +L A++FGH++ + VI AI++ A   A       +  + 
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPVEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ +++ + +  L  +  I EK  R  +I ++  ++ +   +E+ + +  EI ++F D
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALLAENEALDAKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGS+LF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   
Sbjct: 361 RDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+ +DF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL QAK  RLHIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  D+I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   + + A   I+ IT   EV  IY G+V ++ DFGAFV     +DGLVHISQ++ +RV
Sbjct: 601 TDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K SD + EG  V VK+L+ D +G+++LSMK   + + +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSAE 699


>gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1
 gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/696 (44%), Positives = 440/696 (63%), Gaps = 3/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T E+E  GRP  +E G++A  + G+ +  YG+T VL T    +  K+G DFFPL+ +Y
Sbjct: 2   IRTFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RESRP+E   L +R+IDR IRPLF K Y N+ QVI  V+  D +
Sbjct: 62  EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P + +M+ +S AL +S +PF GP     V  I+G+Y++NP  ++ +   L+L VSGT+
Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGEYIVNPTSEQKELSELELIVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DAV+M+E  AN+L+E  +LDAI+F H E K ++  I  +     K    VI  +  S+L 
Sbjct: 182 DAVMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETDSELL 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E+   +   L  +    +K  R + I  +  + + YF  ++   +  E+ ++       
Sbjct: 242 AEVVSFLDTKLANAIKTVDKTERNENIKAISAEALDYFEEKYEGRS-KEVNTILSKQIKV 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R ++  + +R D R  + +R IS++VG+L RTHG+ LF RG+TQ + V TLG   D Q
Sbjct: 301 ETRKMITSEGIRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       +M HYNF P + GE   M  PSRREIGHG L  RA+ P++P    FPY
Sbjct: 361 RIDGLGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+   +GSSS A+VCGS+L+LMDAGVPI   VAGIAMGL+K+     ILSDI G
Sbjct: 421 AIRLVSEVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDIQG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MD KVAGT++GITA+QMD+KI GI  NIM  AL QAK GR HILN+M + ++ 
Sbjct: 481 MEDALGDMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAITS 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P+V  + + PD++R VIG GGKVI  I+++TG K+NI++DGT+ IA+    
Sbjct: 541 PRTELSAYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVKINIENDGTIYIAAPDQE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A EMI  I   P V ++Y G+V+K+MDFGAFV     ++GLVHIS L+ ERVAK +
Sbjct: 601 SARVALEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVAKVA 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           DV+ EGD + VKL++ + +GKI LS K +     K 
Sbjct: 661 DVLAEGDLIEVKLMEINPQGKIGLSRKALLPKPEKE 696


>gi|293556873|ref|ZP_06675434.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1039]
 gi|291600957|gb|EFF31248.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1039]
          Length = 736

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/702 (43%), Positives = 456/702 (64%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP V +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAVAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++      E       E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729


>gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp.
           PRwf-1]
 gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           PRwf-1]
          Length = 704

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/699 (49%), Positives = 477/699 (68%), Gaps = 7/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  + E ++    + +ETGRIARQ++ +VL   G   VL  VV     K+GQ+FFPLT
Sbjct: 3   MFNTISREFQYGNEQVVIETGRIARQAN-SVLVHMGGVSVLVAVVVKSDAKEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE RPTE E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +    + +M+ ASAAL +S  PF GP+ GA+V +ING+YVLNP ++E + S LDL V+
Sbjct: 122 DKKHYADIAAMIGASAALSISDAPFNGPIGGARVGFINGEYVLNPSIEELKSSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I++LAK    +    +  +  +
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIAELAKAVGTQKQDFVAPELNA 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSV 294
           +L+E+++    E +  +  I +K  R +++D++K   +   +    SE  +  E +I  +
Sbjct: 242 ELKEKVTTQFGEQVAEAYAISDKQARYEKLDEIKAAAIDALAGDPESEEFAEKEAQIKEI 301

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++ + VR  +L  K R+DGRD +TVR +  QVG+L  THGS+LF RG+TQA+V  TL
Sbjct: 302 YNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTL 361

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D   +DSL+GT ++ FM+HYNF   + GE  R G P RREIGHGRLARR +  +LP
Sbjct: 362 GNSRDVNLIDSLAGTIQDHFMLHYNFPHYSVGETGREGVPKRREIGHGRLARRGVQAMLP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F 
Sbjct: 422 DSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGDRFA 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN 
Sbjct: 482 VLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITSDIMEKALEQAHAGRIHILNA 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++VL  SR ++    P   ++ I  D+IR+VIG GG  IR + E TGA ++IDD+GT++
Sbjct: 542 MNEVLPASRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVIDIDDNGTIR 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   + A  + A   I +IT   EV K+YKG V +V+DFGAFV      DGLVHISQ++ 
Sbjct: 602 IFGENKAATKEAIRQIEAITAEVEVGKVYKGTVARVVDFGAFVTVLPGTDGLVHISQIAD 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           ERV   SD + EG  + V + D D+RG+IKL+MK V+Q 
Sbjct: 662 ERVESVSDYLSEGQQINVLVQDVDNRGRIKLTMKGVEQE 700


>gi|238897558|ref|YP_002923237.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259534133|sp|C4K3E6|PNP_HAMD5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229465315|gb|ACQ67089.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 716

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/698 (47%), Positives = 465/698 (66%), Gaps = 2/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF       ++    + +ETG +ARQ+  AV+     T VL TVV  +  K GQ FFPL+
Sbjct: 1   MFTPTICRFDYGQLKVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKPGQTFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQER+YAVG+IP  + RRE+RP E E L SR+IDR IRPLF K + NE QVI  V+  
Sbjct: 61  VHYQERSYAVGRIPSNFFRRETRPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASA L LSG+PF  P+  A+V +ING YVLNP  +E  Q  L+L V+
Sbjct: 121 NPKVNPDIVAMIGASAVLSLSGIPFHEPIGAARVGFINGAYVLNPTPEELKQSDLNLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AVLMVE EAN L+E+ +L AIIFGH + + VIE+I+ L K   K       K    
Sbjct: 181 GTKNAVLMVESEANILTEEQMLGAIIFGHEQQQIVIESINDLVKKAGKLKWPFTPKIVDE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           KL   +++  K+DL  +  I +K  R  +++++K  ++     E+ + N  +I  +  + 
Sbjct: 241 KLRSCITEEDKKDLSNAYLITDKQERYAKLNEIKTNIIERILKENETVNAEQIQDILYNF 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  +L  + R+DGRD + +R + A  G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNLVRQRILKDEPRIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTLGTSR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGH RLA+RA+  V+P   +
Sbjct: 361 DLQTIDDLMGERSDSFLFHYNFPPYSVGETGMLGSPKRREIGHARLAKRALMAVMPNIEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+ D F++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKFVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMDMKI GI+  IM  AL  AK  RLHIL+ M++V
Sbjct: 481 ILGDEDHLGDMDFKVAGTSEGITALQMDMKIQGITPEIMQSALHHAKAARLHILSVMNQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S +   + ++ P +  + I P++I++VIG GG VIR + ++T  K++I DDG + IA+ 
Sbjct: 541 ISSASSTISQYAPHIYNIKINPEKIKDVIGKGGAVIRALSDETDTKIDISDDGNITIAAL 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S      A++ I  IT   EV +IY+G V ++ D+GAFV    A++GLVHISQ++  RV 
Sbjct: 601 SQKSAAFAQQRIEEITANIEVGRIYQGTVTRIADYGAFVSIASAKEGLVHISQIAEGRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K +D +K    V VK+L+ D +G+I+LS+K    +T +
Sbjct: 661 KVTDHLKLKQQVSVKVLEIDRQGRIRLSIKDAIADTSE 698


>gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 702

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/701 (49%), Positives = 474/701 (67%), Gaps = 7/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  + E ++  + + +ETGRIARQ++ +VL   G   VL  VV     K+GQ+FFPLT
Sbjct: 3   MFNTISREFQYGNQQVIIETGRIARQAN-SVLVHMGGVSVLVAVVVKSEAKEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE RPTE E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D +    + +M+ ASAAL +S  PF GPV GA+V +ING+YVLNP ++E +   LDL V+
Sbjct: 122 DKKHYADIAAMIGASAALAISDAPFNGPVGGARVGFINGEYVLNPSIEELKNSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I +LAK    E    +  +  +
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIVELAKAVGTEKQQFVAPELNA 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSV 294
           +L+E+++      +  +  I +K  R +++D++K   +   + +      S  E +I  +
Sbjct: 242 ELKEKVTTQFGSQVADAYSISDKQARYEKLDEIKAAAIEALAGDPESEEFSEKESQIKEI 301

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++ + VR  +L  K R+DGRD +TVR +  QVG+L  THGS+LF RG+TQA+V  TL
Sbjct: 302 YNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTL 361

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D   +DSL+GT ++ FM+HYNF   + GE  R G P RREIGHGRLARR +  +LP
Sbjct: 362 GNSRDVNLIDSLAGTIQDHFMLHYNFPHFSVGETGREGVPKRREIGHGRLARRGVQAMLP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+GD F 
Sbjct: 422 DSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDRFA 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAGT  GITA+QMD+KI GI+ +IM  AL++A  GR+HILN 
Sbjct: 482 VLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITADIMEKALEKAHAGRIHILNA 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++VL  SR ++    P   ++ I  D+IR+VIG GG  IR + E TGA ++IDD+GT++
Sbjct: 542 MNEVLPSSRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVIDIDDNGTIR 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   + A  + A   I ++T   EV K+YKG V +V+DFGAFV      DGLVHISQ+S 
Sbjct: 602 IFGENKAATKEAIRQIEALTAEVEVGKVYKGTVARVVDFGAFVTVLPGTDGLVHISQISD 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ERV   SD + EG  + V + D D+RG+IKL+MK V+Q   
Sbjct: 662 ERVENVSDYLSEGQEINVLVQDVDNRGRIKLTMKGVEQEQA 702


>gi|69248510|ref|ZP_00604759.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
 gi|258615105|ref|ZP_05712875.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           DO]
 gi|293567824|ref|ZP_06679165.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1071]
 gi|294614599|ref|ZP_06694503.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1636]
 gi|294618481|ref|ZP_06698045.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1679]
 gi|294621222|ref|ZP_06700407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           U0317]
 gi|314938851|ref|ZP_07846122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a04]
 gi|314943656|ref|ZP_07850410.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133C]
 gi|314949091|ref|ZP_07852451.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0082]
 gi|314952184|ref|ZP_07855202.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133A]
 gi|314994554|ref|ZP_07859820.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133B]
 gi|314996553|ref|ZP_07861590.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a01]
 gi|68194404|gb|EAN08910.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
 gi|291589409|gb|EFF21216.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1071]
 gi|291592501|gb|EFF24106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1636]
 gi|291595238|gb|EFF26567.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1679]
 gi|291599218|gb|EFF30250.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           U0317]
 gi|313589294|gb|EFR68139.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313591076|gb|EFR69921.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133B]
 gi|313595716|gb|EFR74561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133A]
 gi|313597693|gb|EFR76538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133C]
 gi|313641862|gb|EFS06442.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a04]
 gi|313644507|gb|EFS09087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0082]
          Length = 736

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/702 (43%), Positives = 456/702 (64%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++      E       E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 729


>gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
 gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
          Length = 685

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/669 (49%), Positives = 466/669 (69%), Gaps = 2/669 (0%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           IARQ+  AV+    +T V  T V  + +K+GQDFFPLTVNYQERTYA G+IPG + RRE 
Sbjct: 2   IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP E E L++R+IDR +RPLF + + NE Q+I  V+  + + +P +V+M+ ASAAL LSG
Sbjct: 62  RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF GP+  A+V YIN QYVLNP  DE + S LDL V+GT  AVLMVE EA  LSE+ +L
Sbjct: 122 VPFNGPIGAARVGYINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPE 260
            A++FGH++ + VI+ I+ L K   KE      +  +  L++ ++ + +  +  +  I E
Sbjct: 182 GAVVFGHDQQQVVIQNINDLVKEAGKEKWDWQPEPVNQALKDRIAALAESRMGDAYRITE 241

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R  Q++ +K+++ +   +E  + +  E+  +   ++ +VVR+ ++  + R+DGR+ +
Sbjct: 242 KQERYAQVNLIKEEVTAALLAEDENVDLSEVSDILAHLEKQVVRSRVIRGEPRIDGREKD 301

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            VR +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q +D L G   + F+ HYNF
Sbjct: 302 MVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYNF 361

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   +G+P RREIGHGRLA+R +  V+P  A FPYT+R+VSEITES+GSSSMA+
Sbjct: 362 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSHADFPYTIRVVSEITESNGSSSMAS 421

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK+G+DF++LSDI GDEDHLG MDFKVAG+  GI
Sbjct: 422 VCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLSDILGDEDHLGDMDFKVAGSREGI 481

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI+  IM +AL QAK  RLHIL  M + ++  R ++ EF PR+  + I P
Sbjct: 482 SALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINGPREEISEFAPRIYTIRISP 541

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV 
Sbjct: 542 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLKAKEAIRRIEDITAEVEVG 601

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +
Sbjct: 602 RIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEIDRQ 661

Query: 681 GKIKLSMKV 689
           G+I+LSMK 
Sbjct: 662 GRIRLSMKE 670


>gi|303233686|ref|ZP_07320340.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           BVS033A4]
 gi|302495120|gb|EFL54872.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           BVS033A4]
          Length = 714

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/695 (42%), Positives = 458/695 (65%), Gaps = 2/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT ++
Sbjct: 2   IKKHEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +
Sbjct: 62  EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ ++  L+L V+GT+
Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DA++MVE   N ++E  VL AI+  H E K + E I  + K C K     I  +   +L+
Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           EE+     EDL+      +K  R   I+ LK+ +V +F  ++      ++ ++++D++  
Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFIEKYDESIASKVSTIYDDLEKS 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q
Sbjct: 302 EVRRLILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 VLDGLIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K+ D+ +ILSDI G
Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE
Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++ ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +  
Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  
Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV+KE D + VKL+D DD+GK+ LS K +     +
Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKALLPKPER 696


>gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 714

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/695 (50%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 20  MFNIIRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 78

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 79  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 138

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 139 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 198

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A     KE   +      
Sbjct: 199 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAKESDWVAPAKNE 258

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 259 ALLEQLKTAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 318

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 319 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 378

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 379 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 438

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 439 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 498

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 499 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 558

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 559 VISRARAEISANAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 618

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 619 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 678

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  + V++ D D+RG+IKL+MK ++Q
Sbjct: 679 ANVTDVLKEGQELKVQVADVDNRGRIKLTMKDIEQ 713


>gi|293573060|ref|ZP_06684001.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E980]
 gi|291606879|gb|EFF36260.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E980]
          Length = 736

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/696 (43%), Positives = 455/696 (65%), Gaps = 8/696 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 29  MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 88  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 148 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 208 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 267

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R + I+ +K  +   ++      E       E+  
Sbjct: 268 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 327

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 328 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 387

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 388 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 447

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 448 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 507

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 508 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 567

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 568 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 627

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 628 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 687

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            +RV K  DVVK GD + VK+ + D +G++ LS K 
Sbjct: 688 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKA 723


>gi|297588437|ref|ZP_06947080.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           53516]
 gi|297573810|gb|EFH92531.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           53516]
          Length = 714

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/695 (43%), Positives = 457/695 (65%), Gaps = 2/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT ++
Sbjct: 2   IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +
Sbjct: 62  EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ D+  L+L V+GT+
Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTQEQRDKSDLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DA++MVE   N ++E  VL AI+  H E K + E I  + K C K     I  +   +L+
Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNVELD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           EE+     EDL+      +K  R   I+ LK+ +V +F  ++      ++ ++++D++  
Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFVEKYDESIASKVSTIYDDLEKS 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q
Sbjct: 302 EVRRLILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 VLDGLIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K  D+ +ILSDI G
Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKKDDNVVILSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE
Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++ ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +  
Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  
Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV+KE D + VKL+D DD+GK+ LS K +     +
Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKALLPKPER 696


>gi|311695954|gb|ADP98827.1| polynucleotide phosphorylase/polyadenylase [marine bacterium HP15]
          Length = 727

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/694 (50%), Positives = 466/694 (67%), Gaps = 4/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
                  E  G+ + LETGRIARQ+ G+VL T  +  VL TVV  +  K GQ FFPLTVN
Sbjct: 25  KPFKKSFELGGKTVTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVN 84

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y E+TYAVGKIPGG+ +RE RP+E E L SR+IDR IRPLF   + NE QVI  VM    
Sbjct: 85  YFEKTYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVITTVMSSSK 144

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQGSL-DLFVSG 180
              P + +M+AASAAL +SG+PF+GP+  ++V Y N   Y LNP  +E Q SL D+ V+G
Sbjct: 145 NQDPDIAAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLLDMVVAG 204

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSK 239
           T+DAVLMVE EA  L+ED +L  +++GH E +  + AI + A    K       + + ++
Sbjct: 205 TEDAVLMVESEAKGLTEDQMLGGVLYGHQEMQTAVTAIKEFAAEIGKPRWDWQPAAENTE 264

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
           L   +       +  +  I +K  R +++ ++K   V   +  E    +E E+   F  I
Sbjct: 265 LLNAIKADFAGAIEEAYGIRDKMARYERLGEVKAAAVEKLAGEEEGQPSEDEVKKYFGKI 324

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  ++D K R+DGRD++TVR I  +VG+L   HGS+LF RG+TQAIV  TLGT  
Sbjct: 325 EKSVVRQQVIDGKPRIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSR 384

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +++ F+ HYNF P + GE  R+G P RRE+GHGRLA+R +  V+P   +
Sbjct: 385 DVQIIDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVLAVMPTLEE 444

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+GD F +L+D
Sbjct: 445 FPYAIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDKFAVLTD 504

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA   RLHIL EM+KV
Sbjct: 505 ILGDEDHLGDMDFKVAGTQEGVTALQMDIKINGITDEIMEIALEQAHAARLHILGEMNKV 564

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R +L    P +  + I P++IR+VIG GG VIR I ++TGA +++DDDG VKI + 
Sbjct: 565 ISEPRAELSARAPSITTIKINPEKIRDVIGKGGSVIRAICDETGASIDLDDDGNVKIYAD 624

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    +AA   ++ IT   EV  IYKG+V +++DFGAFV+    +DGLVHISQ+S  R+ 
Sbjct: 625 NQEAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISDRRIE 684

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             +D + EG  V VK+LD D+RG++KLSMK + +
Sbjct: 685 NVTDELSEGQEVLVKVLDVDNRGRVKLSMKEIKE 718


>gi|302380540|ref|ZP_07269005.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311483|gb|EFK93499.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 714

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/695 (42%), Positives = 457/695 (65%), Gaps = 2/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT ++
Sbjct: 2   IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +
Sbjct: 62  EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ ++  L+L V+GT+
Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DA++MVE   N ++E  VL AI+  H E K + E I  + K C K     I  +   +L+
Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           EE+     EDL+      +K  R   I+ LK+ +V +F  ++      ++ ++++D++  
Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDHFVEKYDESIASKVSTIYDDLEKS 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q
Sbjct: 302 EVRRLILEDHIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 VLDGLIDQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K  D+ +ILSDI G
Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKADDNVVILSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE
Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++ ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +  
Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  
Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV+KE D + VKL+D DD+GK+ LS K +     +
Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKALLPKPER 696


>gi|226946303|ref|YP_002801376.1| polynucleotide phosphorylase/polyadenylase [Azotobacter vinelandii
           DJ]
 gi|259534109|sp|C1DFK5|PNP_AZOVD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226721230|gb|ACO80401.1| polyribonucleotide nucleotidyltransferase [Azotobacter vinelandii
           DJ]
          Length = 702

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/694 (48%), Positives = 473/694 (68%), Gaps = 5/694 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLT 60
            +      ++    + LETGRIARQ+ GAVL T  +   VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKTFQFGQSTVTLETGRIARQASGAVLVTIDDEVAVLVTVVAAKQADPGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA G+IPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VHYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQGS-LDLFV 178
             ++ P + SM+  SAAL +SG+PF GP+  A+V +     Y+LNP  ++ + S LD+ V
Sbjct: 121 SKKTDPDIASMIGTSAALAVSGIPFNGPIGAARVGFHEETGYLLNPSYEQLKASRLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT+ AVLMVE EA +L+ED +L A++F H E + VI+AI + A    +         + 
Sbjct: 181 AGTESAVLMVESEAEELTEDQMLGAVLFAHEEFQAVIQAIKEFAAETGRSAWDWQPPVEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW-NEGEIVSVFE 296
           + L E +     E +  +  I  K  R  ++D+L+++ ++  + +     +  E+   F 
Sbjct: 241 TALLEAIRAEFGEAISQAYTITVKQERYGRLDELREQTIARLAGDAEGQPSVAEVKEAFG 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I+ + VR  ++D K R+DGRD+ TVR +  +VG+L +THGS+LF RG+TQA+VV TLGT
Sbjct: 301 LIEYRTVRQNIVDGKPRIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D+L G +++ FM+HYNF P + GE  RMG+  RREIGHGRLARR +  +LP+ 
Sbjct: 361 ARDAQVLDTLEGERKDSFMLHYNFPPFSVGECGRMGSAGRREIGHGRLARRGVQAMLPKD 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +L
Sbjct: 421 DSFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI+E IM +AL QA   RLHIL +M 
Sbjct: 481 TDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITEEIMEIALNQALEARLHILGQMG 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +V+ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI 
Sbjct: 541 QVIGQSRSELSSNAPTMLSMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             +    EAA++ + SIT   E+ KIY G+V +++DFGAFV+    +DGLVHISQ+S +R
Sbjct: 601 GETREAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + K +DV+KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDV 694


>gi|88860552|ref|ZP_01135190.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
 gi|88817750|gb|EAR27567.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
          Length = 709

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/690 (48%), Positives = 470/690 (68%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              + +     + LETG IARQ+D AVLA+ G+T VL TVV  +    GQDFFPLTVNYQ
Sbjct: 4   IIKKFQLGQHTVTLETGAIARQADAAVLASIGDTSVLITVVGKKEAAPGQDFFPLTVNYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGG+L+RE RP++ E LI+R+IDR IRPLF   + NE QVI  V+  + E 
Sbjct: 64  ERMYAAGRIPGGFLKREGRPSDAETLIARLIDRPIRPLFPDGFVNEVQVIATVVSFNPEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+++  SAAL +SG+PF GPV  ++V YINGQYVLNP + E ++  LDL V+GT++
Sbjct: 124 QPDIVTLIGTSAALAISGIPFNGPVGASRVGYINGQYVLNPSVKELEESQLDLVVAGTEN 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
           AVLMVE EAN LSEDV+L A+++GH + + +I A+++      K      + + +  L  
Sbjct: 184 AVLMVESEANILSEDVMLGAVMYGHEQMQSIITAVAEFKAEAGKPTWNWSAPEKNVDLAT 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQ 299
           +++ + +  +  +  I +K  R   +   K ++V   ++   E  S ++ E+  +F  ++
Sbjct: 244 QIANIAEAKIGAAYLITDKVARKDALSAAKAEVVETLTAQLAEGESLDKNEVGDLFGSLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  ++  + R+DGR+ + +R +    G+L RTHGS++F RG+TQA+V  TLGT  D
Sbjct: 304 KTIVRGRIIAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERD 363

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+LSGT  + FM+HYNF P   GE   +G+P RREIGHG LA+R I  V+P   +F
Sbjct: 364 SQMLDALSGTSNSRFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPSLTEF 423

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALM+AGVP+   VAGIAMGLVK+ ++F++LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKENENFVVLSDI 483

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL QAK  RLHIL  M + +
Sbjct: 484 LGDEDHLGDMDFKVAGTSNGITALQMDIKIEGITREIMQIALNQAKAARLHILGVMDQAI 543

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  + +L EF PR+  M IPP +I  VIG GG  IR + E+TG  + I+DDGT+KIA+++
Sbjct: 544 SAPQAELSEFAPRIYTMNIPPKKIAEVIGKGGATIRALTEETGTTIEIEDDGTIKIAATN 603

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA   I  +T   EV  IY G+VV+++DFGAFV+    +DGLVHISQ+  ERV  
Sbjct: 604 GDSAKAAIARIEQLTAELEVGTIYTGKVVRLVDFGAFVNVLPGKDGLVHISQICEERVNN 663

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            +D +  G  V VK+++ D +G+++LS+K 
Sbjct: 664 VADHLSIGQEVKVKVVEVDRQGRVRLSIKE 693


>gi|260558389|ref|ZP_05830585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           C68]
 gi|260075563|gb|EEW63869.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           C68]
          Length = 708

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/702 (43%), Positives = 456/702 (64%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++      E       E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLFKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 716

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/691 (42%), Positives = 441/691 (63%), Gaps = 3/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E+AGR L +E G++A+Q+ GA L  YG+T V  T    +  ++  DFFPLTV
Sbjct: 1   MEEQKFQMEFAGRTLTVEVGKLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+ Y+VGKIPGG+++RE +P E+  L +R+IDR IRPLF K Y++E  V+      D
Sbjct: 61  DYEEKMYSVGKIPGGFIKREGKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +++P + +M+ AS +L +S +PF GP+ G +V  ++GQ+V+NP + + ++  +D  V+G
Sbjct: 121 HDNAPEIAAMIGASVSLCMSHIPFAGPIAGVRVGRVDGQFVINPTVVQSEKSDMDFVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSK 239
           T+DA+LMVE  A Q+ E  +LDAI+  H E K  +          +      ++++  + 
Sbjct: 181 TKDAILMVEGGAEQVPEADILDAIMVAHEEIKKAVAFQESFLDAVSVPKQEFVEAEPPAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + E +    +  ++ + F  +K  R ++++ ++  +  +FS  +   +   + ++ + + 
Sbjct: 241 MVEAVHAYGEAAMKEAVFTADKMAREEKMNAVETDIYEHFSDIYPE-DAAVVAAITQKMI 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++   K+R DGR  + VR +S +VGL  RTHG+ LF RG TQ +   TL    +
Sbjct: 300 KEIVRHMIAVDKIRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPLSE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D +       +M HYNF   + GE      P RREIGHG+LA RA+  VLP   +F
Sbjct: 360 AQHIDGVGLETDRRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALVQVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSE+ ES+GSSSM +VCGS+LALMDAGVP+  PVAG+AMGLV  G+DF IL+DI
Sbjct: 420 PYAIRVVSEVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGEDFTILTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI G+   I+  ALQQA  GRLHI+ +M   +
Sbjct: 480 QGMEDALGDMDFKVAGTTKGVTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKMLTAI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  R  L  F PR+  M I PD+IR+VIG GGK+I+ I E+TGAK++IDD G V IAS  
Sbjct: 540 SAPRKTLSPFAPRIITMQIHPDKIRDVIGPGGKIIKQITEETGAKIDIDDTGLVYIASVD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  + A+  I  +T   EV + Y+G+V ++M+FGAFV     ++GLVHISQL+ ERV K
Sbjct: 600 AAGGDQAKAWIERLTKDVEVGETYEGKVTRLMNFGAFVEVLPGKEGLVHISQLANERVEK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK ++ D +G+I LS KV+
Sbjct: 660 VEDVVHVGDEIMVKCIEIDSQGRINLSRKVL 690


>gi|258543760|ref|ZP_05703994.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
           ATCC 15826]
 gi|258520996|gb|EEV89855.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
           ATCC 15826]
          Length = 693

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/685 (49%), Positives = 471/685 (68%), Gaps = 3/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           +   +    + LE+G IARQ+DGAV+     TVVL T V  +++ +GQDFFPLTV+YQE+
Sbjct: 5   ITFSYGKHQVTLESGEIARQADGAVMVNMEGTVVLVTAVAKKTVAEGQDFFPLTVDYQEK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA G+IPGGY RRE RP+ENE L+SR+IDR +RPLF + + NE QVI +VM  + + SP
Sbjct: 65  SYAAGRIPGGYFRREGRPSENETLVSRLIDRPLRPLFPEGFFNEVQVIASVMSVNPDISP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            + +M+ ASAA+ LSG+PF GP+  A+V Y NG Y+LNP   E Q   LDL V+GT+ AV
Sbjct: 125 DIPAMIGASAAIALSGVPFNGPIGAARVGYKNGAYLLNPSDKELQTSDLDLVVAGTEGAV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEEEM 244
           LMVE +AN+L EDV+L A+++GH + + VI AI +LA    K       +     L  ++
Sbjct: 185 LMVESQANELPEDVMLGAVMYGHEQMQVVINAIRELAAKAGKPAWDWQPAPADEALIAKV 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            ++  + L  +  I +K  R   +  + +   +   SE   WN   + +   D++ +VVR
Sbjct: 245 RELAHDKLVAAYQIADKQERQAAVAAVHEAAQAALVSED-GWNAAAVGNTVHDLEYRVVR 303

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +L K+ R+DGRD+ TVR I+ + G+L R HGS+LF RG+TQA+VV TLGT  D Q +D
Sbjct: 304 DRILAKEPRIDGRDTVTVRPITIRTGVLPRVHGSALFTRGETQALVVATLGTGRDAQIID 363

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L+G  R+ FM+HYNF P + GE  R+G+P RREIGHGRLARR +  +LP  + FPYT+R
Sbjct: 364 ALTGEYRDIFMLHYNFPPFSVGETGRVGSPKRREIGHGRLARRGVTAILPPESTFPYTIR 423

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F +LSDI GDED
Sbjct: 424 VVSEITESNGSSSMASVCGTSLALMDAGVPVKTPVAGIAMGLVKEGERFTVLSDILGDED 483

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAG+ +G+TA+QMD+KI GI+  IM  AL QAK GRLHIL  M++ +++ R 
Sbjct: 484 HLGDMDFKVAGSANGVTALQMDIKIDGITREIMEQALTQAKAGRLHILEIMNQAIAQPRA 543

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ E+ PR   + I  ++I++VIG GG  IR I E TG  + I+DDGT+KIA+      +
Sbjct: 544 EISEYAPRFTTLRIDVEKIKDVIGKGGATIRSITETTGTTIEIEDDGTIKIAAVDKTAAD 603

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            AR +I  IT  PE+ +IY  +VVK+ DFGAFV F   ++GLVH+SQ++  RV    D +
Sbjct: 604 DARRIIEEITAEPEIGRIYDAKVVKITDFGAFVAFLPGKEGLVHVSQIAEHRVNNVEDEL 663

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             G  V VKLL+ D +G+++LS+K 
Sbjct: 664 SVGQEVKVKLLEIDRQGRVRLSIKE 688


>gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName:
           Full=Polynucleotide phosphorylase 2; Short=PNPase 2
 gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/696 (44%), Positives = 440/696 (63%), Gaps = 3/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T E+E  GRP  +E G++A  + G+ +  YG+T VL T    +  K+G DFFPL+ +Y
Sbjct: 2   IRTFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RESRP+E   L +R+IDR IRPLF K Y N+ QVI  V+  D +
Sbjct: 62  EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P + +M+ +S AL +S +PF GP     V  I+G+Y++NP  ++ +   L+L VSGT+
Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSELELIVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DAV+M+E  AN+L+E  +LDAI+F H E K ++  I  +     K    VI  +  S+L 
Sbjct: 182 DAVMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETDSELL 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E+   +   L  +    +K  R + I  +  + + YF  ++   +  E+ ++       
Sbjct: 242 AEVVSFLDTKLANAIKTVDKTERNENIKAISAEALDYFEEKYEGRS-KEVNTILSKQIKV 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R ++  + +R D R  + +R IS++VG+L RTHG+ LF RG+TQ + V TLG   D Q
Sbjct: 301 ETRKMITSEGIRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       +M HYNF P + GE   M  PSRREIGHG L  RA+ P++P    FPY
Sbjct: 361 RIDGLGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+   +GSSS A+VCGS+L+LMDAGVPI   VAGIAMGL+K+     ILSDI G
Sbjct: 421 AIRLVSEVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDIQG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MD KVAGT++GITA+QMD+KI GI  NIM  AL QAK GR HILN+M + ++ 
Sbjct: 481 MEDALGDMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAITS 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P+V  + + PD++R VIG GGKVI  I+++TG K+NI++DGT+ IA+    
Sbjct: 541 PRTELSAYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVKINIENDGTIYIAAPDQE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A EMI  I   P V ++Y G+V+K+MDFGAFV     ++GLVHIS L+ ERVAK +
Sbjct: 601 SARVALEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVAKVA 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           DV+ EGD + VKL++ + +GKI LS K +     K 
Sbjct: 661 DVLAEGDLIEVKLMEINPQGKIGLSRKALLPKPEKE 696


>gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
           propionicus DSM 2032]
          Length = 695

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/696 (47%), Positives = 459/696 (65%), Gaps = 5/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HTVE E  GR +  ETG++A+Q++G+V+ + G+T VL TVV +   KD   F PLT+ Y
Sbjct: 2   IHTVETEIGGRTIAFETGKMAKQANGSVVVSSGDTKVLVTVVAESESKD-MGFLPLTIEY 60

Query: 64  QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           QER YA G+IPG Y RRE  RP+E E+L  R+IDR +RPLF   Y  ETQ+I  V   D 
Sbjct: 61  QERMYAAGRIPGSYFRREIGRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQ 120

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           E  P +++M  AS ALMLS +PF GPV  A+V Y++GQYVLNP   + + S ++L V+GT
Sbjct: 121 EFDPDILAMNGASMALMLSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQINLVVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AV+MVE +A++++ED VL+AI F H   +P+I+    L +   K    + +   +  L
Sbjct: 181 RSAVVMVEGKASEMAEDTVLEAIFFAHAGIQPLIDLQINLREQAGKAKREVVAPTVNQAL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           +E++  +    +       EK  R  +   LK+++++    E       E+  +    + 
Sbjct: 241 KEKVEAVAASGMDEVVTTAEKMARAARYSKLKEEVLAQIDPELYQQ-PSEVTELLSGYKK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +V+R  ++ K +R+DGR  E VR IS +VG+L R HGS+LF RG+TQA+V+ TLG+  DE
Sbjct: 300 QVMRDRIVGKGMRLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERDE 359

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q+++ L G     FM+HYNF P   GEV  +  PSRR+IGHG LARR I  VLP    FP
Sbjct: 360 QHLEGLGGDVYRRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGTLARRGIEAVLPANDSFP 419

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YTLR+VSE+ ES+GSSSMATVCG SLALMDAGVP+  PV+G+AMGL+K+GD  ++L+DI 
Sbjct: 420 YTLRVVSEVLESNGSSSMATVCGGSLALMDAGVPVKAPVSGVAMGLIKEGDQVVVLTDIL 479

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV GT  GIT +QMD+KI G+   IM  AL QAK+GR+HIL +M   LS
Sbjct: 480 GDEDHLGDMDFKVVGTRQGITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILEKMEGALS 539

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R  + E  P+   + I PD+IR++IG GGKVIR +  +  +K++++DDGTVKI S+S 
Sbjct: 540 SPRTVVSEHAPKYVTLKIHPDKIRDIIGPGGKVIREMTTEFDSKIDVEDDGTVKIFSNSS 599

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
               A  + I+ IT VPEV  IY+G+V  + +FGAFV      DG+VHIS+L+ +RV K 
Sbjct: 600 ESANALIKRIQQITAVPEVGAIYEGEVRTIKEFGAFVQILPGTDGMVHISELANDRVKKV 659

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +DVVKEGD + VK++D D+RG+I+LS K       +
Sbjct: 660 TDVVKEGDIIKVKVIDIDNRGRIRLSRKAALAEGEE 695


>gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 697

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/695 (49%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQYGQHTVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + + NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAA+ ++ +PF GP+ GA+V  ING+Y+LNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMIGASAAMSIAAVPFRGPIAGARVGLINGEYILNPTHEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  ++AI + A      E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPSKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+++GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSENGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
 gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
          Length = 697

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/695 (50%), Positives = 473/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPSKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|169824458|ref|YP_001692069.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
 gi|226702653|sp|B0S1D9|PNP_FINM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167831263|dbj|BAG08179.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
          Length = 714

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/695 (43%), Positives = 458/695 (65%), Gaps = 2/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E +  G+ +++  G++A Q++GA L   GETV+L T V  +  ++G DFFPLT ++
Sbjct: 2   IKKYEYDLCGKKIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y N+ QVI   +  D +
Sbjct: 62  EEKLYSVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P +++M+ +S AL +S +PF GP     V  I+G++++NP  ++ ++  L+L V+GT+
Sbjct: 122 NTPDILAMIGSSIALSISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DA++MVE   N ++E  VL AI+  H E K + E I  + K C K     I  +   +L+
Sbjct: 182 DAIMMVEAGCNNITEQQVLKAILRAHEEIKKICEFIESIQKECGKPKQEFIQPEKNIELD 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           EE+     EDL+      +K  R   I+ LK+ +V YF  ++      ++ ++++D++  
Sbjct: 242 EEVKSFCIEDLKKITVNEDKLDREDHINTLKRSVVDYFVEKYDESIASKVSTIYDDLEKS 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+  +R D R  + +R+I+  V +L R HGS LF RG TQ + V TLGT  D Q
Sbjct: 302 EVRRLILEDYIRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   +M  YNF P + G+   + +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 362 VLDGLIEQEDKRYMHQYNFPPYSVGDARPLRSPGRREIGHGALAERALLPVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GSSS A+VCGS+L+L+DAGVPI +PVAGIAMGL+K+ D+ +ILSDI G
Sbjct: 422 TIRVVSEVLSSNGSSSQASVCGSTLSLLDAGVPIKEPVAGIAMGLIKEDDNVVILSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  GITA+QMD+KI GISE I+  AL++A+ GRLHIL+ M++ +SE
Sbjct: 482 LEDHLGDMDFKVAGTKDGITALQMDIKITGISEEILTEALERARVGRLHILSLMNECISE 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              ++ ++ PR+ ++ I P+++R VIG GGKVI  I+++TG K++ +DDG + +A  +  
Sbjct: 542 PNKEISKYAPRIMVINIAPEKVREVIGPGGKVINKIIDETGVKIDTEDDGKITVAGENTE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ I   PE+ + Y G+V K+M+FGAFV     ++GL+HIS ++ ER  K  
Sbjct: 602 SAQRAIDMIKEIVREPEIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNIAHERTNKVE 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV+KE D + VKL+D DD+GK+ LS K +     +
Sbjct: 662 DVLKENDEIMVKLMDIDDQGKMTLSRKALLPKPER 696


>gi|257887903|ref|ZP_05667556.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,141,733]
 gi|257893296|ref|ZP_05672949.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,408]
 gi|257896479|ref|ZP_05676132.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com12]
 gi|257899445|ref|ZP_05679098.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com15]
 gi|257823957|gb|EEV50889.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,141,733]
 gi|257829675|gb|EEV56282.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,408]
 gi|257833044|gb|EEV59465.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com12]
 gi|257837357|gb|EEV62431.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com15]
          Length = 708

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/702 (43%), Positives = 457/702 (65%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R + I+ +K  +   ++      E       E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREENIEQVKLDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 722

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/697 (49%), Positives = 478/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF       +W    + +ETG IARQS GAV+    +TVV+ TVV  +S K GQ FFPLT
Sbjct: 3   MFKKAVKSFQWGNHQVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+I+V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179
           + +    + +++AASAAL +SG+PF GPV  A+V Y NGQY+LNP   ++    LDL V+
Sbjct: 123 NPDVPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EANQLSE+V+L A+++GH++ +  I AI++L     K      +    +
Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINELVAEAGKPEWDWTAAPKDE 242

Query: 240 LE-EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               +++ + +  LR +  I +K  R  ++ ++ K++++    E    +   +  +  +I
Sbjct: 243 PFIAKVTALAEAPLREAYQIRQKGARSDKLKEITKEVMAKLQEEG-DVDAVAVNDILFEI 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 302 EAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTAR 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP    
Sbjct: 362 DEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAED 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y++R+VSEITES+GSSSMA+VCG  LA+MDAGVP+   VAG+AMGL+ DG+ F +L+D
Sbjct: 422 FAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLTD 481

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+K+ GI++ IM +AL QAK GRLHIL++M + 
Sbjct: 482 ILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R +L    PR+    I PD+IR VIG GG  I+ + ++TG  ++I DDGTV IAS+
Sbjct: 542 MGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAST 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY+G VVK+++FGA V+    +DGL+HIS++S ERV 
Sbjct: 602 SAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERVK 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +  D + EG  V VKLL  D+RG+++LS+K    + G
Sbjct: 662 EVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEG 698


>gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 733

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/712 (48%), Positives = 483/712 (67%), Gaps = 14/712 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + +ETG IARQ+ GAV+ T G TVVLATVV  +  K GQDFFPLT
Sbjct: 1   MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E++YA G+IPGGY +RE +PTE E L SR+IDR +RPLF + + NE QVII+V+  
Sbjct: 61  VDYVEKSYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E  P + SM+ +SAAL +SG+PF+GP+  A+V YINGQYVLNP   +     +DL V+
Sbjct: 121 DPEIDPDIASMIGSSAALSISGVPFDGPIGAARVGYINGQYVLNPSESQIKDSDMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QLSE+++L  ++FGH + +  I AI  L K   K       +    
Sbjct: 181 GTEQAVLMVESEAKQLSEEIMLGGVVFGHEQLQLAINAIHDLVKQAGKPEWDWTPAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVS 293
            L  ++ +     L  +  I EK +R  ++ ++  ++    + +         +E EI +
Sbjct: 241 DLISQVREYALAGLTEAFGIREKQLRSTKLKEVSTQVKESLAKKAEESGTDAPDEVEIDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D+++ +VR  +L+ + R+DGRD+ +VR IS ++G+L RTHGS+LF RG+TQA+V+ T
Sbjct: 301 IIFDLESSIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVIAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ VDS+ G  R  FM+HYN  P ATGEV R G+P RREIGHGRLA+RA+   L
Sbjct: 361 LGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALIATL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    F YT+R+VSEITES+GSSSMA+VCG SLA+MDAGVP+   VAG+AMGL+K+G+ F
Sbjct: 421 PNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGNKF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHIL 
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQAKEGRLHILG 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + +S SR +L  F PR+  + I P+++R+VIG GG  IR + E+TG ++ I DDG +
Sbjct: 541 KMKEAISGSRNELSSFAPRMISLNINPEKVRDVIGKGGATIRTLTEETGCQIEITDDGHI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS L   + A+  I  +T   E+ K+Y+G V+K++DFG  +     +DGL+HIS+++
Sbjct: 601 TIASSDLEAAQEAQRRIEELTAEVEIGKVYEGTVIKLLDFGGVLQILPGKDGLLHISEIA 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-------VDQNTGKPI 698
             R+   +DV+  G  V VK+++ DDRG+I+LS K        VD N  +P+
Sbjct: 661 NFRIKDINDVLSIGQKVNVKVIESDDRGRIRLSAKAIGGIPGLVDPNAKEPV 712


>gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 697

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/690 (42%), Positives = 440/690 (63%), Gaps = 4/690 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     +EWAGR L +E G++A+Q++GAVL  YG+T VL+T    +  KD   FFPLTVN
Sbjct: 4   EKQLFSMEWAGRTLTIEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKD-LPFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YA GKIPGG+++RE RP+++ +L SR+IDR IRP+F   ++N+ QVI  VM +D 
Sbjct: 63  YEERLYAAGKIPGGFIKREGRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           ++   + +M+ +S AL +S +PF GP+ G  +  I+G++++NP   + +   ++L V+G 
Sbjct: 123 DAPAEMAAMIGSSLALSVSDIPFSGPIAGVTIGRIDGEFIINPTPQQLETSDIELVVAGN 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A ++ E+ +L+A+++GH+E K +I     +     KE + +  K   + L
Sbjct: 183 KDAINMVEAGAEEVPEETILEALMYGHDEIKRIIAFQEDIVSKVGKEKMEVQLKTVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E E+   +   L+ +  + EK+ R   +  +   ++  + +E    +  E   V + +  
Sbjct: 243 EAEIRDKVGNQLKTAALVEEKHAREDAVKAVMDSILDQYVTEEEDRS-VEAKEVLDKLFK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++  +K+R DGR  + +R +++++ +L RTHGS LF RG TQA+ V TLG   D 
Sbjct: 302 ETVRILITKEKIRPDGRKPDEIRALASEIDILPRTHGSGLFTRGQTQALSVCTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P    FP
Sbjct: 362 QILDGLGIEETKRFMHHYNFPSFSVGETGPIRGPGRREIGHGALGERALEQVIPSEEDFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+M AGVPI  PVAGIAMGLVK  +D  +L+DI 
Sbjct: 422 YTIRLVSEVLESNGSTSQASICASTLAMMAAGVPIKAPVAGIAMGLVKHEEDVTVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAGT  G+TA+QMD+KI GI   ++  AL QA+ GR+ IL  M   +S
Sbjct: 482 GMEDALGDMDFKVAGTKKGVTAIQMDIKISGIDRAVLEQALSQAREGRIKILESMESAIS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L E+ P++  M+I PD+IR+VIG  GK+I  I+E TG K++I+ DG V IAS++ 
Sbjct: 542 TPREELNEYAPKILTMSINPDKIRDVIGPSGKMINQIIEDTGVKIDIEQDGKVYIASANH 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A+++I  I    +V + Y G+V ++  FG FV     +DGLVHISQL+ ERV K 
Sbjct: 602 EMNLKAKQIIEDIVREVQVGETYLGKVKRIEKFGCFVELFKGKDGLVHISQLAKERVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVV  GD + VK+ + D++G++ LS KV+
Sbjct: 662 EDVVSLGDEILVKVTEIDNQGRVNLSRKVL 691


>gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 689

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/685 (44%), Positives = 453/685 (66%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA+G++PGG+++RE+RP E+ IL SR+IDR IRPLF K  +NE  V+  VM  D +  P
Sbjct: 63  MYAIGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +  M+ ASAAL +S +P+ GP+ G ++  +NG++V+NP   + ++  L++ V+GT+DA+
Sbjct: 123 AICGMIGASAALSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           LMVE  A ++ E+ +L+ I+  H E K ++     +     KE  V +SKD  +++ + +
Sbjct: 183 LMVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDVKAKVGKEKRVFESKDVPAEIADAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q  ++++ ++++F+  +   N  ++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQETEVREDVLAHFADIYPD-NLADVNKAFDAMTKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D
Sbjct: 302 HMITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY LR
Sbjct: 362 GIGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I PD+IR+VIG GGKVIR I+++TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIDETGAKIDIEDDGTVFIASVDQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G+I LS K 
Sbjct: 662 NVGDEIMVKVIEIDKQGRINLSRKD 686


>gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
          Length = 703

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/694 (46%), Positives = 469/694 (67%), Gaps = 2/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+  AV+A+  +T VL TVV  +  K  QDFFPLTVNY
Sbjct: 3   PITKSFQYGQHTVTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+TYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE QV+I VM  + +
Sbjct: 63  QEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSANPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
               ++SM+  SAAL +SG+PF GP+  A+V Y +G+Y+LN R++E     LDL V+GT+
Sbjct: 123 IPTDIISMIGTSAALAISGIPFNGPIGAARVGYTDGEYILNTRVEEQADSDLDLVVAGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLE 241
            AVLMVE EA+ LSEDV+L A++FGH + + V+ A+ + A   + +        + + L+
Sbjct: 183 GAVLMVESEADVLSEDVMLGAVMFGHEQLQTVVTAVKEFAANVSIDKWDWKPEAENTTLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +++  + + ++  +  I +K  R   +    +K      +E  + ++ E+ ++  D+++ 
Sbjct: 243 DKVKALAEAEMVAAYQISDKLARKDAVTAATEKARDAILAEDETQDKKEVSNLLHDLESD 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGRD + +R +    G+L RTHGS++F RG+TQAIV  TLGT  D Q
Sbjct: 303 VVRSRILAGEPRIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L G + + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY
Sbjct: 363 MIDELQGRRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  ++F++LSDI G
Sbjct: 423 VVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QAK  RLHILN M + +  
Sbjct: 483 DEDHLGDMDFKVAGTTGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGG 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L EF PR+  + +  D+IR+VIG GG +IR I E++   + I+DDGT+KI ++  A
Sbjct: 543 HREELSEFAPRIYTVKVDQDKIRDVIGKGGAMIRSITEESDTNIEIEDDGTIKIFATERA 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A   I  +T   EV K Y G++ +++DFGAFV     ++GLVHISQ++ ERV K +
Sbjct: 603 KADIAISKIEQVTAEIEVGKTYHGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVT 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D + EG  + VK+++ D + +++LS+K + +   
Sbjct: 663 DYLTEGAMIDVKVMEIDRQNRVRLSIKELLEKPA 696


>gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 695

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/695 (50%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 1   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  +  LDL V+
Sbjct: 120 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   I      
Sbjct: 180 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWIAPTKNE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 240 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 300 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 360 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 420 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 540 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 600 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 660 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 694


>gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 697

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/695 (50%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPTKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
 gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
          Length = 697

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/695 (50%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   +      
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E+++I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVISINPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQDVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|288556936|ref|YP_003428871.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
           OF4]
 gi|288548096|gb|ADC51979.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
           OF4]
          Length = 704

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/696 (44%), Positives = 455/696 (65%), Gaps = 4/696 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     I+WAGR L +ETG+ A+Q++GAVL  YG+T VL+TV   +  K   +FFPLTVN
Sbjct: 4   ERQIFSIDWAGRELTVETGQFAKQANGAVLVRYGDTAVLSTVTASKEPK-NLNFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YA GKIPGG+++RE RP+E  IL SR+IDR IRPLF   ++NE QVI  VM  D 
Sbjct: 63  YEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M+ +S AL +S +PF+GP+ G  V   +G+ ++NP  ++ ++  +DL V+GT
Sbjct: 123 NCSSEMAAMIGSSLALSISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESDIDLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DA+ MVE  A+++ E+ +L+AI++GH+E K ++    ++ +   KE   I  K   ++L
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMYGHDEIKRLVAFQEEVVQAAGKEKKEIQLKQVDAEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  + + DL+ +  + EK+ R   ID + K ++     E      G++  V + +  
Sbjct: 243 ESAVRNLAEADLKKAVQVQEKHERQAAIDAVMKPIIEK-YEEEQEELVGDVREVLQKVVK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR ++  +KVR DGR  + +R +++QV LL RTHGS LF RG TQA+ + TLG   D 
Sbjct: 302 EEVRRLITVEKVRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICTLGALGDV 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+ P++P    FP
Sbjct: 362 QILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPIIPSENDFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK  +   +L+DI 
Sbjct: 422 YTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHLTVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED LG MDFKVAGT  G+TA+QMD+KI GI+  ++  AL+QAKRGR+ IL+ M   +S
Sbjct: 482 GMEDALGDMDFKVAGTKEGVTALQMDIKISGINREVLEQALEQAKRGRMVILDNMLSAIS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           ESR +L E+ P++  M + PD+IR+VIG  GK+I  I+E+TG K++I+ DGTV I+S   
Sbjct: 542 ESRSELSEYAPKIMTMHVNPDKIRDVIGPSGKMINKIIEETGVKIDIEQDGTVYISSVDS 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              E AR++I  I    EV + Y G+V +V  FGAFV     +DGLVHISQL+ ER+ K 
Sbjct: 602 KMNEQARKIIEDIVREVEVGQTYLGKVKRVEKFGAFVELFKGKDGLVHISQLAEERINKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            DVV  GD + V++ + D++G++ LS KV+ +   +
Sbjct: 662 EDVVSIGDEILVRVTEIDNQGRVNLSRKVILKEEKE 697


>gi|210622620|ref|ZP_03293280.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
 gi|210154121|gb|EEA85127.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
          Length = 695

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/694 (43%), Positives = 450/694 (64%), Gaps = 4/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      E+AGR L +E G+I   ++G  +  YG++VV+         +DG DFFPL+
Sbjct: 1   MVEHKIYTTEFAGRELSVEVGKICEMTNGNCIVKYGDSVVMVNTTKSAEPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ Y+VGKIPGG+L+RE +P+E  IL SR+IDR IRPLF K ++N+ QV+  V+  
Sbjct: 61  VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + +P +V+M+ +S AL +S +PF GP     +  ++G++V+NP  ++ ++  + L VS
Sbjct: 121 DQDCTPDIVAMIGSSVALSISDIPFNGPTGSVCIGLVDGEFVVNPNAEQREKSEMHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT+DA++MVE  A ++SED +L AI+F H   K ++E I ++     KE   +       
Sbjct: 181 GTKDAIMMVEAGAQEVSEDTMLKAILFAHEHIKKIVEFIEEIVAGSGKEKEEVKLYHADE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFE 296
            +E ++ +     +R +    EK  R + +D +K++  +YF    E+     G+I  V +
Sbjct: 241 DIEAQVKEFASAKMREAVQTVEKMERMENMDKVKEETFAYFEEKLENFEEVAGDIEEVLQ 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I    VR+++ D++VR D R    +R I  + G++ RTHGS++F RG TQ + + TLG 
Sbjct: 301 AIIKDEVRSLITDEEVRPDNRKYNEIRPIWCETGMIPRTHGSAIFTRGQTQVMNIATLGA 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P  
Sbjct: 361 LGDVQKLDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVIPSQ 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+VSE+  S+GS+S A+VC S+L+L+DAGVPI   VAGIAMGL+K  D  ++L
Sbjct: 421 EDFPYAIRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVVVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKVAGT+ GITA+QMD+KI GI E+I+  AL QA+ GR+HIL EM 
Sbjct: 481 SDIQGMEDHLGDMDFKVAGTEHGITAIQMDIKIDGIDEDILRRALAQAREGRMHILGEMR 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           KV+SE R +L  + P++E M I PD+I++VIG GGKVI  I+++TG K++I+  G V IA
Sbjct: 541 KVISEPRPELSPYAPKIERMNINPDKIKDVIGPGGKVITKIIDETGVKIDIEQTGEVFIA 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +  A I+ A+E+I +I    EV K+Y+G+V ++M+FGAF+     ++GL+H+SQ+S ER
Sbjct: 601 GTDKAMIDRAKELIGNIVAEAEVGKVYRGKVTRIMNFGAFMEILPGKEGLLHVSQISKER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V    DV+  GD + VK+ + D++G+I LS KV+
Sbjct: 661 VNNVEDVLNIGDELEVKVTEIDEKGRINLSRKVL 694


>gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 689

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/685 (44%), Positives = 453/685 (66%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA+G++PGG+++RE+RP E+ IL SR+IDR IRPLF K  +NE  V+  VM  D +  P
Sbjct: 63  MYAIGRLPGGFIKREARPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            +  M+ ASAAL +S +P+ GP+ G ++  +NG++V+NP   + ++  L++ V+GT+DA+
Sbjct: 123 AICGMIGASAALSISDIPWAGPIAGVRMGRVNGEFVVNPTKAQLEETDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           LMVE  A ++ E+ +L+ I+  H E K ++     +     KE  V +SKD  +++ + +
Sbjct: 183 LMVEGGAQEVPEETILEVIMAAHEEIKKIVAFQEDVKAKVGKEKRVFESKDVPAEIADAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q  ++++ ++++F+  +   N  ++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQETEVREDVLAHFAEIYPD-NLADVNKAFDAMTKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    ++Q +D
Sbjct: 302 HMITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY LR
Sbjct: 362 GIGLETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILHEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I PD+IR+VIG GGKVIR I+++TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIDETGAKIDIEDDGTVFIASVDQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G++ LS K 
Sbjct: 662 NVGDEIMVKVIEIDKQGRVNLSRKD 686


>gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName:
           Full=Polynucleotide phosphorylase 3; Short=PNPase 3
 gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/693 (43%), Positives = 438/693 (63%), Gaps = 3/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T E++  GRP  +E G++A  + G+ +  YG+T VL T    +  K+G DFFPL+ +Y
Sbjct: 2   VKTFEMKLGGRPFVVEIGKVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RESRP+E   L +R+IDR IRPLF K Y N+ QVI  V+  D +
Sbjct: 62  EEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSMDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P + +M+ +S AL +S +PF GP     V  I+G+Y++NP   + +  +L+L VSGT+
Sbjct: 122 CPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGEYIVNPTSKQKEDSTLELIVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
           +A++M+E  AN+L+E  +LDAI+F H E K ++  I  +     K    + +K   S L 
Sbjct: 182 NAIMMIEAGANELTEAQILDAIMFAHEEIKKIVAFIENIVSEVGKPKSEVIAKQMDSNLL 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E+   +   L  +    +K  R + I  +  + + YF  ++   +  E+  +   +   
Sbjct: 242 TEVVIFLDTKLANAIKTFDKTERNENIQAVSAEALDYFEEKYEGRS-KEVHDILSMLIKV 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R ++  + +R D R  + +R IS QVG+L R HG+ LF RG+TQ + + TLG   D Q
Sbjct: 301 ETRKMITSEGIRPDNRKLDEIRPISTQVGILPRAHGTGLFNRGETQVLTITTLGDLRDAQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       +M HYNF P + GE   M  PSRREIGHG L  RA+ P++P    FPY
Sbjct: 361 RIDGIGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALLPMIPSKEDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+   +GSSS A+VCGS+L+LMDAGVPI + VAGIAMGL+K+ D  +ILSDI G
Sbjct: 421 AIRLVSEVLTCNGSSSQASVCGSTLSLMDAGVPIKRMVAGIAMGLIKEDDQVVILSDIQG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MD KVAGT+ GITAMQMD+KI GI   IM  AL+QA+ GRLHILN+M + ++ 
Sbjct: 481 MEDALGDMDLKVAGTEEGITAMQMDIKIAGIDRGIMETALEQARIGRLHILNKMKESITS 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R++L  + P+V  + + PD++R VIG GGKVI  I+++TG K+ I++DGT+ +A+    
Sbjct: 541 PRIELSSYAPKVTQIKVHPDKVREVIGAGGKVINKIIDETGCKITIENDGTIYVAAPDQE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A EMI  I   P V ++Y G+V+K+MDFGAFV     ++GLVHIS L+ ERV K +
Sbjct: 601 SSRRAVEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVTKVT 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           DV+ EGD + VKL++ + +GKI LS K +    
Sbjct: 661 DVLAEGDLIEVKLMEINPQGKIGLSRKALLPKP 693


>gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus
           iheyensis HTE831]
 gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain
           [Oceanobacillus iheyensis HTE831]
          Length = 705

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/697 (43%), Positives = 454/697 (65%), Gaps = 4/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E +G+   +E G +A+Q++GA +  YG+T VL+        KD   FFPLTVN
Sbjct: 4   EKQLFSTEISGKKFTVEVGELAKQANGACMIHYGDTSVLSVATASSEPKD-LPFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF   ++NE QVI  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           +    + +M+ +S AL +S +PFE P+ G  V  ++G++++NP ++++ +  ++L V+GT
Sbjct: 123 DCPSEIAAMIGSSIALSVSDIPFEQPIAGVNVGRVDGEFIINPTIEQEAKSDIELTVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  AN++ ED++L+AI+FGH E K ++    +L K C ++   +  ++   +L
Sbjct: 183 KDAINMVEAGANEVPEDIMLEAIMFGHEEIKRLVAFQEELVKACGQDKFDVVLAESEEEL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
            E +    K+ +  +  + EK+ R + I   K ++V+++  +    +   ++ S+ + + 
Sbjct: 243 VENVHSEAKDKIVNAIQVQEKHARDEAIKQAKNEIVAHYEEQEVEEDVIKQVKSILDSMV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++  +K+R DGR  + +R +S+++ +L RTHGS LF RG TQA+ V TLG   D
Sbjct: 303 KEEVRRLITKEKIRPDGRKVDEIRPLSSRIHVLPRTHGSGLFTRGQTQALSVCTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   +  P RREIGHG L  RA+  V+P   +F
Sbjct: 363 VQILDGLDLEESKRFMHHYNFPQYSVGETGPIRGPGRREIGHGALGERALEKVIPDDKEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGLVK GDD+ IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDDYTILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT +G+TA+QMD+KI G+S +I+  AL QAK+GR+ IL+ M   +
Sbjct: 483 QGMEDALGDMDFKVAGTANGVTALQMDIKIDGLSRDILEEALSQAKKGRMQILDSMLATI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E + +L EF P++  MAI PD+IR+VIG  GK I  I+++TG K++I+ DG++ I+S+ 
Sbjct: 543 KEPKEELSEFAPKILTMAIEPDKIRDVIGPSGKQINQIIDETGVKIDIEQDGSIFISSTD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  +    EV +IY G+V ++  FGAFV     +DGLVHIS+L+ ER  K
Sbjct: 603 NEMNKKAKQIIEDLVREVEVGQIYLGKVKRIEKFGAFVELFKGKDGLVHISELAEERTNK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVV   D + VK+ + D +G++ LS K V Q+  K
Sbjct: 663 VEDVVSIDDQIMVKVKEIDRQGRVNLSRKAVIQDEKK 699


>gi|257878824|ref|ZP_05658477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,230,933]
 gi|257881461|ref|ZP_05661114.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,502]
 gi|257890683|ref|ZP_05670336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,410]
 gi|261207096|ref|ZP_05921785.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
           6]
 gi|289565902|ref|ZP_06446342.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           D344SRF]
 gi|293563621|ref|ZP_06678065.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1162]
 gi|257813052|gb|EEV41810.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,230,933]
 gi|257817119|gb|EEV44447.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,502]
 gi|257827043|gb|EEV53669.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,410]
 gi|260078724|gb|EEW66426.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
           6]
 gi|289162275|gb|EFD10135.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           D344SRF]
 gi|291604421|gb|EFF33911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1162]
          Length = 708

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/702 (43%), Positives = 456/702 (64%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE+ +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++      E       E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 689

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/685 (45%), Positives = 452/685 (65%), Gaps = 4/685 (0%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +++ AGR L +ETG +A+Q+ GAV+  YG+T VL T    +  KD  DFFPLTV+Y+E+
Sbjct: 4   FQMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKD-IDFFPLTVDYEEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVG++PGG+++RE+RP E  IL SR+IDR IRPLF K  +NE  V+  VM  D +  P
Sbjct: 63  MYAVGRLPGGFIKREARPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDP 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V  M+ ASAAL +S +P+ GP+ G ++  ING++V+NP   + ++  L++ V+GT+DA+
Sbjct: 123 AVCGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKDAI 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEM 244
           LMVE  A ++ ED++L+ I+  H E K ++     +     KE  V +SKD  +++ + +
Sbjct: 183 LMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMKAKVGKEKRVFESKDVPAEIADAV 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
                + L  +    +K  R  Q  +++  ++++F   +   N G++   F+ +  ++VR
Sbjct: 243 RAYGHDKLDAAVRCADKQQRDAQESEVRADVLAHFEEIYPD-NMGDVNKAFDAMIKEIVR 301

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + VR IS + G+L RTHGS LF RG TQ + V T+    + Q +D
Sbjct: 302 HMITVEKIRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTID 361

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +       ++ HYNF   + GE      P RREIGHG LA RA+ PV+P  A FPY LR
Sbjct: 362 GIGIETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEADFPYALR 421

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+VCGS+L+LMDAGVPI  PVAGIAMGLV  G+ + IL+DI G ED
Sbjct: 422 LVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMED 481

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA +GR+HI+  M   ++E R 
Sbjct: 482 ALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPRQ 541

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           Q+ ++ PR+  M I PD+IR+VIG GGKVIRGI+E+TGAK++I+DDGTV IAS       
Sbjct: 542 QMSQYAPRIITMKIDPDKIRDVIGSGGKVIRGIIEETGAKIDIEDDGTVFIASVEQEGAA 601

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+++I ++T   EV ++Y G+V ++M FGAFV     ++GLVHIS+L+ ERV    DVV
Sbjct: 602 KAQQIIENLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDVV 661

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKV 689
             GD + VK+++ D +G++ LS K 
Sbjct: 662 NVGDEIMVKVIEIDKQGRVNLSRKD 686


>gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 697

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/695 (50%), Positives = 473/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAQSKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   +      
Sbjct: 182 GTEAAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPAKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
            L E++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 TLREQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGLAEEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+LSGT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+GD F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGDRFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 701

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/691 (41%), Positives = 440/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+D V+M+E  A ++ ED++++AI+    E K ++E I ++ K   K  +    +   + 
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMIEAILIAQEEIKKIVEFIEEIVKEVGKPKMEYQKRVVPEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  + +     IP+K  R K++D+LK+++   F  E +      +     +++
Sbjct: 241 IKQKVREIAYDKVYQYVQIPDKVERDKKLDELKEEVFKAFEGE-TEETLLLVDDALYNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ D+  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIADEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD D FI+L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDDSFILLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G++  I+  AL QAK  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   R+ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G++ LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDKLGRLSLSRKE 690


>gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
          Length = 715

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/693 (45%), Positives = 455/693 (65%), Gaps = 8/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T + E AGR L LE G++A+Q+ G+VL  YG+T +L+ V   +  K   DFFPLTVNY+
Sbjct: 6   RTYDFELAGRKLTLEFGKMAKQAHGSVLVRYGDTAILSAVTVSKEPKP-LDFFPLTVNYE 64

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP+E  IL SR+IDR +RPLF++ ++N+ Q++  V+  D + 
Sbjct: 65  ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPVRPLFAEGFRNDVQIVNTVLSVDQDC 124

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           SP + +M+  SAAL +S +PFEGP+ G  V  I+G++V+NP + + ++  + L V+GT  
Sbjct: 125 SPEIAAMIGTSAALCVSEIPFEGPIAGVIVGRIDGEFVINPTVAQAEKSDIHLTVAGTHK 184

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A+ MVE  ANQ+ E ++L+AI+ GH+  K ++E  + +     K+ + +   +   ++++
Sbjct: 185 AINMVEAAANQVPEAIMLEAIMAGHDVIKQLVEFQNMIVSEIGKQKMEVILHEVDPEIDQ 244

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---WNEGEIVSVFEDIQ 299
            +    +  L+ +  I EK  R   IDD+K +   +F+++ +      E  I  V  +I 
Sbjct: 245 AVRAYAEARLKEAVRIEEKQARYDAIDDIKAETKEHFAAKDAEAYPEQEKMISEVLGNIV 304

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ D+KVR DGR    +R +S++  +L RTHGS++F RG TQA+ V TLG   D
Sbjct: 305 KDEVRRLITDEKVRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGD 364

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF P + GE   +  P RREIGHG L  RAI P++P   +F
Sbjct: 365 VQILDGLGLEESKRFMHHYNFPPYSVGEARPLRPPGRREIGHGALGERAIEPIIPSEVEF 424

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PYT+R+VSE+ ES+GS+S A++C S LALMDAGVPI  PVAGIAMGL+  KD   F IL+
Sbjct: 425 PYTIRLVSEVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKDEKSFSILT 484

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT++G+TA+QMD+KI GI+  I+ +AL+QA+ GRLHILN M  
Sbjct: 485 DIQGMEDHLGDMDFKVAGTEAGVTAIQMDIKISGINREILELALEQARVGRLHILNHMMS 544

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SE R +L  + P++  M I P++IR+VIG  G+VI  I+E+TG K++I+ DG V IAS
Sbjct: 545 TISEPRKELSPYAPKIMTMTINPEKIRDVIGPQGRVINKIIEETGVKIDIEQDGRVFIAS 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +      A+++I  +     V ++Y G V +V  +GAF+     ++GL HISQL+ ERV
Sbjct: 605 INHEANLRAKQIIEDLVREVAVGQVYLGTVKRVEKYGAFIELFAGKEGLCHISQLAEERV 664

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AKT DVV  GD V VK+ + DD+G++ LS K V
Sbjct: 665 AKTEDVVAVGDKVQVKVTEIDDQGRVNLSRKAV 697


>gi|229918674|ref|YP_002887320.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
           AT1b]
 gi|259534123|sp|C4L6J6|PNP_EXISA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229470103|gb|ACQ71875.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
           AT1b]
          Length = 738

 Score =  782 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/690 (45%), Positives = 447/690 (64%), Gaps = 4/690 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 EW GRPL +E G++A+Q++G+ L  YG+TVVLATV   ++ KD  DFFPLTVNY
Sbjct: 5   KQVFSTEWGGRPLSVEVGQLAKQANGSALVRYGDTVVLATVTASKAPKD-LDFFPLTVNY 63

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+LRRE RP EN IL SR+IDR IRPLF   ++++ QV+I VM +D +
Sbjct: 64  EEKLYSVGKIPGGFLRREGRPGENAILTSRLIDRPIRPLFPDGFRHDIQVMIYVMSNDPD 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQ 182
            S  +  M+  S AL +S +PF+GP+ G  V  ++G++V+NP   + +   L+L V+GT 
Sbjct: 124 CSAEMAGMLGTSIALSISDVPFDGPIAGVTVGRVDGEFVINPTTAQLEKTDLELQVAGTS 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
            A+ MVE  AN++ EDV+L++I+FGH E K +I    ++ +   K         + +   
Sbjct: 184 TAINMVEAGANEVPEDVMLESILFGHEEIKRLIAFQQEIVEAVGKPKFEYTVSKYDEALT 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQA 300
              +  + ++  +  + EK+ R + I+++  K V+ + +         GE+  +      
Sbjct: 244 AELEAARPEIVEAVQVEEKHARDEAINEVIAKYVAMYEARLADEPSKLGEVSGILNKFVK 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR ++  +KVR DGR  + +R ++++VGLL R HG  LF RG TQ + V TLG   D 
Sbjct: 304 DEVRRLITVEKVRPDGRRPDVIRPLASEVGLLPRAHGVGLFTRGQTQVMSVATLGVIGDA 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +   +   FM HYNF P + GE   + AP RREIGHG L  RA+ P++P+ A FP
Sbjct: 364 QIIDGIGLEENKRFMHHYNFPPFSVGEARPVRAPGRREIGHGALGERALLPIIPKEADFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGL+ +G+ + +L+DI 
Sbjct: 424 YTIRLVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIMEGEHYTVLTDIQ 483

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  GITA+QMD+KI GI+  I+  AL+QA+ GRLHIL+ M + L 
Sbjct: 484 GLEDHLGDMDFKVAGTKDGITALQMDIKIAGITREILEEALEQARVGRLHILDHMLETLE 543

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R QL ++ P++  M I PD+IR+VIG GGK+I  I++QTG K++I+ DGTV IAS+  
Sbjct: 544 TPRTQLSKYAPKIVTMTINPDKIRDVIGPGGKMINSIIDQTGVKIDIEQDGTVFIASTDQ 603

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+ A  MI  I     V ++Y   V ++  FGAFV     +D LVH+S+ S ERVA  
Sbjct: 604 EGIDLAMSMIGDIVREVVVGEVYDATVRRIEKFGAFVELFKGKDALVHVSEFSLERVANV 663

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVVK GD++ VK+ + DD+G++  S K +
Sbjct: 664 EDVVKLGDSIQVKVTEIDDKGRVNASRKAL 693


>gi|53804618|ref|YP_113771.1| polynucleotide phosphorylase/polyadenylase [Methylococcus
           capsulatus str. Bath]
 gi|81682222|sp|Q609C6|PNP_METCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53758379|gb|AAU92670.1| polyribonucleotide nucleotidyltransferase [Methylococcus capsulatus
           str. Bath]
          Length = 691

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/692 (48%), Positives = 464/692 (67%), Gaps = 3/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    + ++    +  ETG IARQ+D AV+     TVVL TVV  +      DFFPLTV
Sbjct: 1   MNPIRKQFQYGAHTVSFETGEIARQADAAVMVDMAGTVVLVTVVGRKDASPHGDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+ YA G+IPGG+ +RE RP+E E L +R+IDR IRPLF   + +E QV+  VM  +
Sbjct: 61  NYQEKAYAAGRIPGGFFKREGRPSEKETLTARLIDRPIRPLFPDGFTHEVQVVATVMSLN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            E  P + SM+ ASAAL LSGLPF+GP+  A+V ++NG YVLNP     +GS LDL V+G
Sbjct: 121 PEVDPDIPSMLGASAALTLSGLPFKGPIGAARVGFVNGAYVLNPDGSVVEGSELDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSK 239
           T +AVLMVE EA  L E+V+L A++FGH + +  I AI++LA+     P   +     + 
Sbjct: 181 TANAVLMVESEAKILPEEVMLGAVVFGHEQMQTAIRAINELAEEVGVTPWPWEPSAVDAA 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L   + ++ +  L     I +K +R +++ +++K ++   ++E  + +E  +    E ++
Sbjct: 241 LVAAVDELARAGLGEGYNIADKQLRQQKLKEVRKAVIDALTAEG-AHDENAVKRQIEKLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR+ +L    R+DGRD  TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT  D
Sbjct: 300 EEIVRSNILHHGKRIDGRDLSTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+L G  + +FM+HYNF P   GE   +G+P RREIGHGRLA+R +  ++P   +F
Sbjct: 360 AQLIDALEGEYKENFMLHYNFPPYCVGETGAIGSPKRREIGHGRLAKRGVQAIMPTMDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +RIVSEITES+GSSSMA+VCGSSLALMDAGVP    VAGIAMGL+ +G++F +LSDI
Sbjct: 420 PYVIRIVSEITESNGSSSMASVCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAVLSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM  AL QA+ GR+HIL++M++ L
Sbjct: 480 MGDEDHLGDMDFKVAGTRDGVTALQMDIKIDGITPEIMRQALHQAREGRMHILDKMAQAL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R ++ ++ PR+    I P +IR VIG GG  IR I E+TG  ++I DDG VKIAS  
Sbjct: 540 PAPRSEMSDYAPRITSFTIDPSKIREVIGKGGATIRAITEETGTSIDISDDGVVKIASVD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 AR  I  IT   EV K+Y+G+V ++MDFGAFV     +DGLVHISQ+S E V K
Sbjct: 600 KQAGLEARRRIEDITAEVEVGKVYEGKVARLMDFGAFVTILPGKDGLVHISQISDEHVEK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD + EGD V VK+L+ D +G+++LSMK V+
Sbjct: 660 VSDKLAEGDMVKVKVLEIDRQGRVRLSMKAVE 691


>gi|257885733|ref|ZP_05665386.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,501]
 gi|257821589|gb|EEV48719.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,501]
          Length = 708

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/702 (43%), Positives = 455/702 (64%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MSEKQVFKTTWGGRPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+++RE RP+    L +R+IDR IRP+F++ ++NE QV   VM  
Sbjct: 60  INYEEKMYAAGKIPGGFIKREGRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + SP + +M+ +S AL +S +PF+GP+ G +V  +NG+YVLNP +++ +Q  ++L V+
Sbjct: 120 ETDCSPAMAAMLGSSLALSISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A ++SE  +L A++FG +  K ++    ++ +   KE + +      +
Sbjct: 180 GTKQAINMVESGAKEVSEKDMLGALLFGFDAIKELVAFQEEIVQAVGKEKMEVTLLQVDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-----EHSSWNEGEIVS 293
            L++E+       ++ +    EK  R   I+ +K  +   ++      E       E+  
Sbjct: 240 VLKKEIFDASYATMKAAVMTEEKLAREDNIEQVKIDIREAYAEKFAGHEDEDHLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V LL R HGS LF RG TQA+   T
Sbjct: 300 ITEDLEKDVVRELITIDKIRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVEVSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALTQAKQARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG  I GI+++TG K++ID DG V
Sbjct: 540 ELTSTIAAPREELSQYAPKIEMIQIEPAKIKDVIGKGGDTINGIIDETGVKIDIDQDGKV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS+    I+ A ++I  +T   +V ++Y G+VV++  FGAFV+    +DGLVHISQL+
Sbjct: 600 SIASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRIEKFGAFVNLIKGKDGLVHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVVK GD + VK+ + D +G++ LS K +    G
Sbjct: 660 NDRVNKVEDVVKLGDEILVKVTEIDKQGRVNLSRKAMLNEDG 701


>gi|149375751|ref|ZP_01893519.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Marinobacter algicola DG893]
 gi|149359876|gb|EDM48332.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Marinobacter algicola DG893]
          Length = 714

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/694 (50%), Positives = 466/694 (67%), Gaps = 4/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +      E  G+ + +ETGRIARQ+ G+VL T  +  VL TVV  +  K GQ FFPLTVN
Sbjct: 11  NPVKKSFELGGKTVTIETGRIARQATGSVLVTVDDISVLGTVVAAKEAKPGQPFFPLTVN 70

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y E+TYAVGKIPGG+ +RE RP+E E L SR+IDR IRPLF K + NETQVI  VM    
Sbjct: 71  YFEKTYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGFMNETQVITTVMSSSK 130

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQGSL-DLFVSG 180
              P + +M+AASAAL +SG+PF+GP+  ++V Y N   Y LNP  +E + SL D+ V+G
Sbjct: 131 NQDPDIAAMLAASAALSISGIPFDGPIGASRVAYTNERGYFLNPTFEELETSLLDMVVAG 190

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T+DAVLMVE EA  L+ED +L A++FGH E +  + AI + A    K       + + ++
Sbjct: 191 TEDAVLMVESEAKGLTEDQMLGAVLFGHQEMQTAVTAIKEFAAEVGKPRWEWQPEAENTE 250

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
           L   +      D+  +  I +K  R  ++ ++K   V   +  E     E E+   F  +
Sbjct: 251 LLNAVKADFSADIEQAYGIRDKMERYARLSEIKSAAVEKLAGEEEGQPAEDEVKKYFAKV 310

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR  ++D K R+DGRD++TVR I  +VG+L  THGS+LF RG+TQAIV  TLGT  
Sbjct: 311 EKTIVRQQVIDGKPRIDGRDNKTVRPIEVEVGVLPSTHGSALFTRGETQAIVTTTLGTAR 370

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G +++ F+ HYNF P + GE  R+G P RRE+GHGRLA+R +  V+P   +
Sbjct: 371 DMQIIDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVAAVMPTMEE 430

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R VSEITES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGLVK+GD F +L+D
Sbjct: 431 FPYTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDQFAVLTD 490

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL QA   RLHIL EM+KV
Sbjct: 491 ILGDEDHLGDMDFKVAGTSDGITALQMDIKIQGITDEIMEIALDQANAARLHILGEMAKV 550

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R +L    P +  + I P++IR+VIG GG  IR I ++TGA +++DDDG VKI + 
Sbjct: 551 ISAPRKELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICDETGASIDLDDDGNVKIYAD 610

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA + +  IT   EV  IY G+V +++DFGAFV+    +DGLVHISQ+S  R+ 
Sbjct: 611 NQDAANAAMKRVMEITAEIEVGAIYSGRVERIVDFGAFVNILPGKDGLVHISQISERRIE 670

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             +D + EG  V VK+LD D+RG++KLSMK V +
Sbjct: 671 NVTDELSEGQEVLVKVLDVDNRGRVKLSMKEVKE 704


>gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera
           micronuciformis F0359]
 gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera
           micronuciformis F0359]
          Length = 717

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/698 (42%), Positives = 449/698 (64%), Gaps = 5/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++++AGRPL +E G++A+QS GA L  YG+T V  +    +  ++  DFFPLTV
Sbjct: 1   MEEKIFQMDFAGRPLTVEVGKLAKQSSGAALVRYGDTAVFVSATGSKEAREDADFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+ YAVGKIPGG+++RE +P E+  L +R+IDR IRPLF K Y+++  V+      D
Sbjct: 61  DYEEKMYAVGKIPGGFIKREGKPPESATLFARLIDRPIRPLFPKTYRHDVHVVAYDFAVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +++P + +M+ AS AL +S +PF GP+ G +V  I+G +++NP +++ ++  +D+ V+G
Sbjct: 121 HDNAPEIAAMIGASVALCMSHIPFAGPIAGVRVGRIDGNFIINPTVEQSEKSDMDIVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+DA+LMVE  A ++ E  +LDAI+F H E + V+E         +        K+    
Sbjct: 181 TKDAILMVEGGAKEVPESDILDAIMFAHEEIRKVVEFQLSFLDEISVPKQEFVEKELPAD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           + E +    +  ++ + F  +K  R ++++ ++  +  +F+  +   N+ ++ ++ + + 
Sbjct: 241 IVEAIHTYGEAKMKEAIFDADKMAREEKMNAVEADIYEHFADIYPD-NQADVATITQKMI 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++   K+R DGR    VR +S +VGL +RTHG+ LF RG TQ +   TL    +
Sbjct: 300 KEIVRHMIAVDKIRPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILSFATLAPLSE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D +       +M HYNF   + GE      P RREIGHG+LA RA+  V+P   +F
Sbjct: 360 AQHIDGVGTETERRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALTQVMPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VSE+ ES+GSSSM +VCGS+LALMDAGVPI  PV+G+AMGLV   DDF IL+DI
Sbjct: 420 PYAIRVVSEVLESNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTKDDDFTILTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QA  GRLHI+++M  VL
Sbjct: 480 QGMEDALGDMDFKVAGTTKGVTAIQMDIKIKGLSREILDTALKQAHEGRLHIMDKMLAVL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R +L  + PR+  M + PD+IR++IG GGK+I+ I E+TGAK++IDD G V IAS  
Sbjct: 540 DAPRKELSPYAPRIITMQVHPDKIRDIIGPGGKMIKQITEETGAKIDIDDTGLVYIASVD 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A+E I ++T   EV + Y G+V ++M FGAFV     ++GLVHISQL+TERV K
Sbjct: 600 GEGGAKAKEWIENLTKDVEVGETYVGKVTRLMAFGAFVEVLPGKEGLVHISQLATERVEK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVV  GD + VK ++ D +G+I LS KVV   TG+ 
Sbjct: 660 VEDVVNVGDEIVVKCVEIDSQGRINLSRKVVL--TGED 695


>gi|309790622|ref|ZP_07685176.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
           trichoides DG6]
 gi|308227350|gb|EFO81024.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
           trichoides DG6]
          Length = 763

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/695 (45%), Positives = 453/695 (65%), Gaps = 8/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V+TV  E AGR L LE GR A Q+DGAV   YG+TV+LATVV  +  ++G DFFPLTV+Y
Sbjct: 15  VYTVSTEIAGRTLTLEAGRFAEQADGAVTVRYGDTVLLATVVAAKEPREGIDFFPLTVDY 74

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+ GKIPG + +RE RPT   IL SR+ DR +RPLF K Y NE QVII     D+ 
Sbjct: 75  EERMYSAGKIPGNFFKREGRPTTTAILTSRLTDRPLRPLFPKGYYNEVQVIITTFSIDMV 134

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P  ++++ ASAAL +S +PF+GPV   Q+ +++G+   NP + E +   LDL V+GT+
Sbjct: 135 NDPGPMAIIGASAALAISDIPFKGPVGAVQMTHLDGKVAANPPMSELERSRLDLVVAGTK 194

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           DAVLMVE  A +L+ED +L+A++ GH  CK + E   +L ++C K     +     + LE
Sbjct: 195 DAVLMVEAGAYELTEDEMLEAVMQGHAVCKQLCELQEELVRLCGKPKREFVPPAVDTSLE 254

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE----GEIVSVFED 297
           E +S  + + LR +     K  R ++   LK ++V++FS++           ++   FE 
Sbjct: 255 ETISAWMGKRLREAVRSKSKQEREERTAALKAEVVAHFSADEPEEELPTRIKDVSKAFEK 314

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  + VR  +LD+ +R+DGR +  +R IS  VG++ R HG+ LF RG TQ + V TLG+ 
Sbjct: 315 LLKEEVRNAILDEGIRVDGRATTEIRPISVDVGVIPRVHGTGLFHRGQTQVLTVTTLGSP 374

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            +EQ +D L       ++ HYNF P +TGE  RMG+P RR+IGHG LA R+++ VLP   
Sbjct: 375 GEEQRLDDLGIETSKRYIHHYNFPPFSTGEAKRMGSPRRRDIGHGALAERSLYAVLPTLE 434

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIIL 476
           +FPYT+R+VSE+  S+GSSSMA+VCGSSL+LMDAGVPI +PVAG+AMGL+ D D  + +L
Sbjct: 435 EFPYTMRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKRPVAGVAMGLITDPDGRWTVL 494

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GIT +QMD+K  GI+ +IM  A  QA+ GRL IL++M+
Sbjct: 495 TDIQGLEDALGDMDFKVAGTSEGITGLQMDIKTTGITYDIMRQAFAQARDGRLFILDKMN 554

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++  R +L  F PR+  + IP ++I  +IG GGK IR I+E TGA+++++DDG V IA
Sbjct: 555 AVINSPRSELSPFAPRIITVQIPVEKIGALIGPGGKTIRSIIEATGAQIDVEDDGRVFIA 614

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S     + A  M+  +T   ++  ++ G+VV +  FGAFV     +DG+VHIS+LS  R
Sbjct: 615 TSDGEAAQKALAMVEGLTREAKIGDVFLGKVVSIKPFGAFVSILPGKDGMVHISELSENR 674

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +    DV++ GD + V ++D D   GKI LS + V
Sbjct: 675 IENVEDVIQVGDEINVMVIDVDRVSGKISLSRRAV 709


>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
           C91]
 gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
          Length = 705

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/691 (49%), Positives = 473/691 (68%), Gaps = 3/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
                  I +    L +ETG IA+Q+ GAV+ +  +TVVL TVV D+  K GQDFFPLTV
Sbjct: 1   MKPIKKSITYGHHTLTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTKPGQDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+ Y+ G+IPG + +RE RP+E EIL SR+IDR IRPLF   + NE QVI  V+  D
Sbjct: 61  DYQEKFYSAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E    + + + ASAAL+LSG+PF+GP+  A+V YI+ +YVLNP   +  +  L+L V+G
Sbjct: 121 AEIDADIPATIGASAALILSGIPFDGPIGAARVGYIDNEYVLNPTTTQLNKSQLNLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           TQ AVLMVE EAN+LSEDV+L A+ +GH++ + VI  I++LA             +    
Sbjct: 181 TQKAVLMVESEANELSEDVMLGAVTYGHDQMQQVINMINELADETGVTAWDWQPAEKDHS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDI 298
           L E+++Q+ + DLR +  + +K VR + I ++ +++ +   +      +E  I  +   +
Sbjct: 241 LIEKITQLAEADLRDAFRLKQKSVRTEAISEIWQRVFTELKAGTEEGPSEQTIKEIGFAL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR  +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 301 EAKIVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G     FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+  VLP   +
Sbjct: 361 DEQKIDALQGDYSERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALLAVLPPVEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y +R+VSE+TES+GSSSMA+VCG  LALMDAG P+   VAGIAMGL+K+G+ F +L+D
Sbjct: 421 FGYAMRVVSEVTESNGSSSMASVCGGCLALMDAGAPLKAHVAGIAMGLIKEGNRFAVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM +AL QAK GRLHIL+ M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGTEEGITALQMDIKIQGITKEIMQVALLQAKEGRLHILDIMKQS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L  +R  +    PR+    I P++IR+VIG GG VIR + E+TG  ++I DDG+V IAS 
Sbjct: 541 LPIARDSVSVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIASI 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S    E A+  I +IT   EV KIY+G V+K++DFGA V     +DGL+HISQ++ ERV 
Sbjct: 601 SNEGGEQAKRRIENITADVEVGKIYEGTVLKLLDFGAIVSILPGKDGLLHISQIANERVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             +D +KEG  + VK+L+ DD+G+++LSMK 
Sbjct: 661 SVADHLKEGQIIRVKVLEADDKGRLRLSMKA 691


>gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
 gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
          Length = 705

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/698 (48%), Positives = 472/698 (67%), Gaps = 2/698 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETG IARQ+  AV+A+ G+T VL +VV  +  + G+DFFPLTV
Sbjct: 1   MNPIVKSFKYGQHTVTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQERTYA GKIPGG+ +RE RP+E E L  R+IDR IRPLF   +KNE QV+  V+  +
Sbjct: 61  NYQERTYAAGKIPGGFFKREGRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E  P +V+++  SAAL +SG+PF GP+  A++ + N +Y+LNP   E  +  LDL V+G
Sbjct: 121 PEIQPDLVALIGVSAALSISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T++AVLMVE EA  LSE+ +L A+++GH + + VIEAI + A           +   + +
Sbjct: 181 TENAVLMVESEAEILSEEQMLGAVMYGHEQMQVVIEAIKEFAAEVNTPKWDWTAPVVNTE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ +++++   DL  +  I EK  R  ++  +K  +++    E++  N  E   +   ++
Sbjct: 241 LKAKIAELASGDLAEAYQIQEKTERYAKVGGIKSAVIAKLQEENAELNTREAGELLASLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  +LD + R+DGRD E +R +S   G+L RTHGS+LF RG+TQA+V  TLGT  D
Sbjct: 301 KNIVRNRILDGEPRIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTERD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +DSL+G   + F+MHYNF P   GE   +G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 361 AQRIDSLTGETIDRFLMHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNADEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLV DGD  +ILSDI
Sbjct: 421 PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGDRSVILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+++IM  AL QAK  RLHIL+ M + +
Sbjct: 481 LGDEDHLGDMDFKVAGSSAGITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           + +R  + EF PR+  + I  D+I+++IG GG  IR + E+TG  + I+DDGTVKIA++S
Sbjct: 541 ATNRDDVSEFAPRIHTIKISTDKIKDIIGKGGATIRALTEETGTTIEIEDDGTVKIAATS 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + +AA E I  +T   EV +IY+G+VV++ DFGAFV+    +DGLVHISQ++ ERV K
Sbjct: 601 NEQAQAAIERIHQLTAEVEVGQIYEGKVVRLADFGAFVNILPGKDGLVHISQITQERVNK 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +D +     V VK+L+ D +G+I+LS+K        P
Sbjct: 661 VADHLSVEQVVKVKVLEVDRQGRIRLSIKEAMDAPAAP 698


>gi|327441005|dbj|BAK17370.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris
           StLB046]
          Length = 704

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/693 (43%), Positives = 446/693 (64%), Gaps = 4/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAGRPL +E G++A+Q++GA +  YGET VLAT    +  K   DFFPLT
Sbjct: 1   MNEKKVFSYEWAGRPLTVEVGQLAKQANGAAMIRYGETAVLATATMSKQPK-ALDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VN++ER YA GKIPGG+++RE RP+E  +L SR+IDR IRP+F   ++NE Q I+ VM +
Sbjct: 60  VNFEERLYAAGKIPGGFIKREGRPSEAAVLTSRLIDRPIRPMFPDGFRNEVQSILMVMSN 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D      V +M  +S +L +S +PF+GP+ G  V YI G++V+NP +++  + ++ L V+
Sbjct: 120 DSNCPADVAAMFGSSLSLAISDIPFDGPIAGVHVGYIEGEFVVNPTVEQSAKSTVHLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           G +DAV MVE  A +++ED++L+AI+FGH E K +I    ++     KE + +   +  +
Sbjct: 180 GNKDAVNMVEAGALEVTEDIMLEAIMFGHEEIKKLIAFQEQIVAEVGKEKLEVTLYELDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFED 297
            L   +    + D+  +    +K +R + I  +K +++  + + E       ++ ++ + 
Sbjct: 240 DLTAAIKAECEADMNTAIQTVDKQLRQENITAVKTRVIEAYEAQEADEATMKQVNAILDK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +    VR ++ + KVR DGR  + +R +S++V LL R HGS+LF RG TQA+ + TLG  
Sbjct: 300 MVKDEVRRLITEDKVRPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALSICTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   +M HYNF   + GE  R G+P RREIGHG L  RAI  V+P   
Sbjct: 360 GDVQIIDGLGIEESKRWMHHYNFPQFSVGETGRYGSPGRREIGHGALGERAILAVMPTEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R VSE+ ES+GS+S A++C S++ALM AGVPI  PVAGIAMGLVK G+ + +LS
Sbjct: 420 EFPYAIRCVSEVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGEHYTVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI G+S +I+  AL QAK GR+HIL  M  
Sbjct: 480 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGLSRDILEEALTQAKIGRMHILEHMMS 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S SR  L ++ P++  + I PD+IR+VIG GGKVI  I+++TG K++ + DGT+ IAS
Sbjct: 540 TISASRTSLSQYAPKIVSIKINPDKIRDVIGPGGKVINKIIDETGVKIDTEQDGTIYIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A I  A+EMI SI    +V + Y   V ++  FGAF      +DGL+HIS++  ER 
Sbjct: 600 ADEAMINRAKEMIESIVREAKVGEYYMATVKRIEKFGAFCEIFPGKDGLLHISEIQEERT 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +  DV+K GD + VK ++ D +G++ LS KVV
Sbjct: 660 KEVEDVLKLGDELLVKCIEIDKQGRVNLSRKVV 692


>gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 698

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/695 (44%), Positives = 458/695 (65%), Gaps = 9/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               ++++ GRPL++E G++A+Q+ GAVL  YGETVVLAT V  +    G DFFPLTVNY
Sbjct: 3   KQVFKLDFRGRPLQVEIGQVAKQASGAVLVRYGETVVLATAVGSKKAGTG-DFFPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGK+PGG+L+RE RP+E+  L +R+IDR IRP+F    +NE Q++  V+  D +
Sbjct: 62  EEKMYAVGKVPGGFLKREGRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQ 182
           +SP + +M  AS AL +S +PF+GP+ G +V  ++GQ ++NP +D+     +DL V+GT+
Sbjct: 122 NSPEMAAMFGASLALGVSDVPFDGPIAGVKVARVDGQLIINPSVDQLATTEIDLTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
            A+ MVE +A ++ E  +L+A++FGH   K ++    ++     KE   +  +K    + 
Sbjct: 182 TAINMVESDAAEVPEAEMLEALLFGHEAIKELVAFQEEIISAVGKEKFELTLAKPLPDIV 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
           ++++++ +  +  +    EK  R + + D+    V YF +++ S  E E     +     
Sbjct: 242 DQVNELFQAKMVQAIQTEEKKAREEAVADVMAAAVEYFQTKYDSNPEFEEIIKSVNIALH 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++   VR ++  ++VR DGR  + +R +S++VGLL R HGS LF RG TQA+ V TL  
Sbjct: 302 DLEKDEVRRLITKERVRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L       FM HYNF P + GE  RMG+P RRE+GHG L  RA+  V+P  
Sbjct: 362 LREHQIIDGLGTEDYKRFMHHYNFPPYSVGETGRMGSPGRREVGHGALGERALKHVIPSE 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFII 475
            +FPY +R+VSE+ ES+GSSS A++CGS+LA+MDAG+PI  PVAGIAMGLV D D D+ I
Sbjct: 422 EEFPYVIRLVSEVLESNGSSSQASICGSTLAMMDAGIPIKAPVAGIAMGLVMDDDADYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK  R+ IL+++
Sbjct: 482 LTDIQGLEDHLGDMDFKVAGTAKGITALQMDIKIQGITEQILREALAQAKVARMQILDQI 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +  ++  R +L ++ P++E++ I  DQI+ VIG GG+ I  I+++TG K++IDD+G V I
Sbjct: 542 TSTIAAPRPELSKYAPKIEMVKIDIDQIKVVIGKGGETINKIIDETGVKIDIDDEGNVSI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            S   A I  A+++I S+T V    ++Y G+VV++  FGAFV     + GL+HISQ++ E
Sbjct: 602 YSEDQAMINKAKDIIESLTHVVAAGEVYTGKVVRIEKFGAFVEILPGKQGLLHISQIAKE 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R+ K  DV+  GD V VK+ + DDRG+I LS KV+
Sbjct: 662 RIDKVEDVLAMGDDVTVKVTEIDDRGRINLSRKVL 696


>gi|188586076|ref|YP_001917621.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226702667|sp|B2A3A3|PNP_NATTJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|179350763|gb|ACB85033.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 718

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/705 (45%), Positives = 449/705 (63%), Gaps = 12/705 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             TV  E AG  L LETG +A+Q++GAV   YG TVVL T    +  KD  +FFPLTV+Y
Sbjct: 2   PTTVSEEIAGYQLTLETGELAKQANGAVKVQYGNTVVLVTATASKEPKDDLNFFPLTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RE +PTE   L +R+ DR IRPLF   ++N   ++  V+  D  
Sbjct: 62  EERLYAVGKIPGGFIKREGKPTEKATLTARLTDRPIRPLFPDGFRNPVHIVSTVLSVDQN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P + S++ ASAAL +S +PF+GP+   +V  +N + V+ P +DE ++  LDL V+GT+
Sbjct: 122 CPPEIASIIGASAALSISDIPFDGPIASVKVGKVNDEIVVTPDVDEHEESQLDLVVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           DA++MVE EAN+L ED +L+AI+  H E K +I    +L +   ++ + ++    S +L 
Sbjct: 182 DAIMMVEAEANELPEDEMLEAIMKAHEEIKKIITMQEQLVEQVGQKKMEVELDLPSDELV 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEGEIV 292
            E+ ++  ED+     I +K  R   +D+ K+K+V +   ++             E  I 
Sbjct: 242 SEVEELALEDIEKVLQIKDKLEREDAMDEAKQKVVDHLLEKYNSEENEDEEEELKEKHIK 301

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S F+ I  + +R+ ++ +  R DGR  + +R ++  V LL  THGS LF RG TQ + V 
Sbjct: 302 SAFDSILKREMRSRIIHENSRPDGRGQKEIRPVTCDVDLLPNTHGSGLFTRGQTQVLNVC 361

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   D Q +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA+ P+
Sbjct: 362 TLGALGDVQILDGLDIEESKRYMHHYNFPPYSVGEAGFMKGPGRREIGHGALAERALKPM 421

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P    FPYT+R+VSE+ ES+GS+SM +VC SSL+LMDAGVPI K V+GIAMGL+K+GD 
Sbjct: 422 IPTEKDFPYTIRLVSEVLESNGSTSMGSVCASSLSLMDAGVPIEKAVSGIAMGLIKEGDQ 481

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             ILSDI G ED LG MDFKVAGT+ GITA+QMD+KI G +  I+  AL+Q K G LHIL
Sbjct: 482 LAILSDIQGIEDFLGDMDFKVAGTEDGITALQMDIKISGTTREILKQALKQGKDGYLHIL 541

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N M + +SE R +L    PRV    I PD+IRNVIG GGK+I  I+++TG K++I+ DG 
Sbjct: 542 NIMKQTISEPREELSPLAPRVIKKQIDPDKIRNVIGPGGKMINKIIDETGVKIDIEPDGL 601

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I+SS   + E A + I  +   PEV ++Y G+VV+   +GAFV     ++GLVHIS+L
Sbjct: 602 IYISSSDAEQAEQAIKAIDELIKEPEVGEVYLGKVVRTEKYGAFVEILPGKEGLVHISEL 661

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696
           + +RV KT DV K GD + VK+++ D+RG+I LS K  + +  GK
Sbjct: 662 AEDRVGKTEDVAKVGDEILVKIINIDERGRINLSRKQALGEEDGK 706


>gi|86157534|ref|YP_464319.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774045|gb|ABC80882.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 749

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/702 (45%), Positives = 460/702 (65%), Gaps = 12/702 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
                 G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+
Sbjct: 34  KTATVGGKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEK 93

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            +A G++PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+  
Sbjct: 94  LFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDT 153

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            V+++  ASAAL +S +PF GP+ G +V  + GQ V NP L +     LD+ ++ ++DA+
Sbjct: 154 DVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASRDAI 213

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEE 243
           +MVE  A ++SE V+++A++FG    +P+++A   L      +P       K+  +L  +
Sbjct: 214 VMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRRAFDPPKNDVELRAK 273

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSV 294
           +  +  E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   
Sbjct: 274 VKALTWEKVKEAYGRDEKHDRYGRLSEIKKELLQALKEEAAGDAAKLATIALREKEIKGY 333

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +ED++   +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TL
Sbjct: 334 YEDVKYDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTL 393

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT EDEQ V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P
Sbjct: 394 GTAEDEQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMP 453

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPYT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   
Sbjct: 454 PEDQFPYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA 513

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT +GIT++QMD+KIGG++  I+  AL QA  GR HIL E
Sbjct: 514 ILSDILGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGE 573

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K LS  R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V 
Sbjct: 574 MAKALSAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVS 633

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS +  ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS 
Sbjct: 634 IASPNQDKVEEAIKMIRGLTQEAEVGRIYMGTVRKIAEFGAFVEIFPGTDGLIHISELSD 693

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +RV   SDV+ EG+ V VK++  D  GKI+LS K    ++ K
Sbjct: 694 KRVKSVSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAK 735


>gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911]
 gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911]
          Length = 706

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/697 (44%), Positives = 452/697 (64%), Gaps = 4/697 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D     ++WAGR L +E G++A+Q++GA L  YG+T VL+T    +  K   DFFPLTVN
Sbjct: 4   DKKIYSLDWAGRTLTVEIGQLAKQANGAALIRYGDTAVLSTATASKEPK-NLDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSMVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + S  + +M  +S AL +S +PF GP+ G  V  ING++V+NP +++  +  + L V+GT
Sbjct: 123 DCSSEMAAMFGSSLALSVSDIPFGGPIAGVTVGRINGEFVINPTVEQQNESDMHLVVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+ +L+AI++GH E K +I    ++     KE   I   +  + +
Sbjct: 183 KDAINMVEAGADEVPEETMLEAIMYGHEEIKRLISFQEQIVSEVGKEKTEIKLYEIDADI 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
           E ++ +  ++D+  +  + EK+ R   I  +K  +++ +   E       ++  V + + 
Sbjct: 243 ESKVREAAEKDMVSAIQVQEKHAREAAIKTVKDAVLAQYEEQEADDETIKQVKKVLDKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S+++GLL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KAEVRRLITEEKVRPDGRGLDVIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLGIEEEKRFMHHYNFPNFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K GD + IL+DI
Sbjct: 423 PYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGDYYSILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+ IL+ M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTSKGVTALQMDIKIEGLSREILEEALQQAKAGRMQILDSMLATI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E + +L  + P++  M I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S  
Sbjct: 543 AEPKKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSVD 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A+++I  I    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ERV K
Sbjct: 603 QEMNDKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVEIFNGKDGLVHISELAEERVGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DV+  GD + VK+ + D +G++ LS K V +   +
Sbjct: 663 VEDVLSLGDELLVKVTEIDKQGRVNLSRKAVLKEQRE 699


>gi|221134255|ref|ZP_03560560.1| polynucleotide phosphorylase/polyadenylase [Glaciecola sp.
           HTCC2999]
          Length = 702

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/696 (46%), Positives = 462/696 (66%), Gaps = 2/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+  AV+A+  +T VL TVV  +  K  QDFFPLTVNY
Sbjct: 3   PITQNFQYGQHTVTLETGVVARQATAAVMASMDDTSVLVTVVGKKEAKADQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE Q++I V+  + E
Sbjct: 63  QEKAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPESFKNEVQIVITVVSANPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQ 182
               ++S++  SAAL +SG+PF GP+  A+V Y NG+Y+LN R  ++ +  LDL V+GT+
Sbjct: 123 IPTDIISLIGTSAALAISGIPFNGPIGAARVGYTNGEYILNTRHSEQAESQLDLVVAGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLE 241
            AVLMVE EA+ LSE+V+L A++FGH + + V+  + + A              + ++L+
Sbjct: 183 SAVLMVESEADILSEEVMLGAVVFGHEQSQAVVNNVREFAAKVNTPMWDWTPEAENTELK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            +++++ K  +  +  I +K  R   +  +     +   +E+   +  E+  +  D+++ 
Sbjct: 243 TKVAELAKAGMTEAYQISDKLARKDAVVAVTSAASAAILAENPDQDPKEVSELLHDLESD 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGRD   +R +    G+L RTHGSS+F RG+TQA+V  TLGT  D Q
Sbjct: 303 VVRSRILAGEPRIDGRDPAMIRALDVATGVLPRTHGSSVFTRGETQALVAATLGTERDAQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L GT  + FM+HYNF P   GE   +G+P RREIGHGRLA+R I  V+P    FPY
Sbjct: 363 MIDELGGTSTSRFMLHYNFPPYCVGETGFIGSPKRREIGHGRLAKRGIQAVMPSETDFPY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK  ++F++LSDI G
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT +GITA+QMD+KI GI++ IM +AL+QAK  RLHIL  M + +  
Sbjct: 483 DEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKEARLHILGVMDQAIGG 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L EF PR+  + I  ++IR+VIG GG +IR I E +   + I+DDGT+KI ++  A
Sbjct: 543 HRDELSEFAPRIYTLKIDQEKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATEKA 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +   A E I  +T   EV K+Y G+V ++ DFGAFV     +DGLVHISQ++ ERVAK +
Sbjct: 603 KATIAIEKIEQVTAEIEVGKVYTGKVSRIADFGAFVEVLPGKDGLVHISQIAHERVAKVT 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           D + EG  V VK+++ D + +++LSMK + +     
Sbjct: 663 DYLSEGQEVQVKVMEIDRQNRVRLSMKELIEKPAAE 698


>gi|269467861|gb|EEZ79604.1| Polyribonucleotide nucleotidyltransferase [uncultured SUP05 cluster
           bacterium]
          Length = 697

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/694 (47%), Positives = 479/694 (69%), Gaps = 7/694 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            ++ T         + LETGRIARQ+ GAVLA+  +T VL TVV  + ++ GQDFFPL+V
Sbjct: 3   MNIVTKSFAMGKHTITLETGRIARQAHGAVLASMDDTQVLVTVVGSKEMRPGQDFFPLSV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+TYA GKIPGG+L+RE+RP+E E L SR+IDR IRPLF   + NE QV+I V+  +
Sbjct: 63  DYIEKTYAAGKIPGGFLKREARPSEKETLTSRLIDRPIRPLFPAGFMNEVQVLITVISAN 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            E  P +++M+  SAAL +SG+PF GP+ GA+V + N +++LNP   E     LD+ V+G
Sbjct: 123 KEVDPDMIAMLGVSAALSISGVPFSGPIGGARVGFKNDEFILNPTYSELADSDLDMVVAG 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T +AVLMVE EAN+LSE+++L A++  H+E +  I+ I++       +    ++   ++ 
Sbjct: 183 TDEAVLMVESEANELSEEIMLKAVMCAHDEYQVAIKNIAEFVAEVGNDKWDWEAPATNET 242

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-EIVSVFEDI 298
           L  ++       +  +  I EK  R  ++ ++K   +   SS+ +  N   E+ + F+ +
Sbjct: 243 LLGDIQSQFGAQINEAYQIKEKLDRYAKVGEIKTTAIEALSSDDADGNSAEEVGNYFKKV 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   VR  +L+   R+DGRD+ETVR++  + G+L+ THGS+LF RG+TQA+VV TLG++ 
Sbjct: 303 EKSTVRERILNNDPRIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKR 362

Query: 359 DEQYVDSLSGTQRND--FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           D Q ++ L  ++R +  F++HYNF P   GE  R+G   RREIGHGRLARR I   LP  
Sbjct: 363 DAQLIEKLESSERKNDYFLLHYNFPPYCVGETGRVGTTKRREIGHGRLARRGISACLPTI 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            ++PYT+R+VSEITES+GSSSMA+VCGSSL+LMDAGVP+  PVAGIAMGLVK+GD F +L
Sbjct: 423 EEYPYTIRVVSEITESNGSSSMASVCGSSLSLMDAGVPMKAPVAGIAMGLVKEGDRFTVL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT  G+ A+QMD+KI GI++ IM +AL+QAK  RL+IL +M+
Sbjct: 483 TDILGDEDHLGDMDFKVAGTSRGVNALQMDIKIQGITQEIMDIALKQAKEARLNILGQMN 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K++ E      +  P+  ++ I  D+IR++IG GG+ I+GI+  +GA V++DDDG V + 
Sbjct: 543 KIICEPNSS-SKNAPKTAVIKIDKDKIRDLIGKGGETIKGIISTSGASVDVDDDGNVNVF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++     + A +M++ +T VPEV+K+Y G++VK+++FGAFV+    +DGL+HIS+++ ER
Sbjct: 602 ANDQKAFDIAAQMVKDVTAVPEVDKVYTGKIVKIVEFGAFVNIMPNQDGLLHISEIAHER 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K  D +KEGD + VK+L  D RG+IKLS KV+
Sbjct: 662 VEKVEDHLKEGDEIDVKVLGLD-RGRIKLSRKVL 694


>gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter
           hongkongensis HLHK9]
 gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9]
          Length = 701

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/701 (47%), Positives = 474/701 (67%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    +KLETG IARQ+ G+VL +  +TVVL  V  ++ +K GQDFFPLT
Sbjct: 1   MFNKFSKTFQYGRHTVKLETGEIARQASGSVLVSMDDTVVLVAVTVNKDVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL  R+IDR IRPLF   + ++ QV+  VM  
Sbjct: 61  VDYYERTYAAGKIPGGFFKREGKQSEKEILTCRLIDRPIRPLFPAGFYHDVQVVATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+ ASAA++L+G+PF GP+  A+V Y NG+Y+LNP   E   S LDL V+
Sbjct: 121 NPEVDADIPAMIGASAAMVLAGVPFMGPIGAARVGYANGEYILNPTKTELTTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+ AVLMVE EA QL E V+L A+++GH + +  I+AI++LA            + + +
Sbjct: 181 GTESAVLMVESEAQQLPEAVMLGAVVYGHEQMQAAIKAINELADEVNPVIFEWAPAAEDT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++  + + D+  +  I +K  R + + +   K+ +   + E  +     I S+F++
Sbjct: 241 ELVAQVKALAEADVAAAFKIRQKQARSQALGEAWSKVKAALITEETETLRANHIKSLFKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR  +L  + R+DGRD+ TVR I+ + G+L R HGS LF RG+TQA+V  TLGT+
Sbjct: 301 LEANVVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D+L+G   + FM+HYNF P +TGE  RMG P RREIGHGRLA+RA+  VLP+  
Sbjct: 361 QDEQIIDALAGEYTDRFMLHYNFPPYSTGETGRMGPPKRREIGHGRLAKRALIAVLPKQE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F Y++R+VSEITES+GSSSMA+VCG  L+LM+AGVP+S  VAGIAMGL+ + + F +L+
Sbjct: 421 DFSYSMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLSAHVAGIAMGLILEDNRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++G+TA+QMD+KI GI++ IM +AL QAK GRLHIL  M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGIMKS 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +     +L    PR+  + I PD+IR+VIG GG VIR + E+TG  ++I +DG + IAS
Sbjct: 541 AIDAP-QELSTHAPRLYTLRINPDKIRDVIGKGGSVIRALTEETGTSIDIAEDGLITIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTE 655
            S    E A+  I  IT   E+ KIY+G VVK++D   GA V     RDGLVHISQ++ E
Sbjct: 600 VSAEGAEEAKRRIEEITAEVEIGKIYEGTVVKILDKNVGAIVQIMPGRDGLVHISQIANE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           R+A  +D ++EG  V VK+L+ D+RG+I+LS+K    +  +
Sbjct: 660 RIANVADHLQEGQQVRVKVLETDERGRIRLSIKAALADAPQ 700


>gi|307825114|ref|ZP_07655335.1| polyribonucleotide nucleotidyltransferase [Methylobacter
           tundripaludum SV96]
 gi|307733862|gb|EFO04718.1| polyribonucleotide nucleotidyltransferase [Methylobacter
           tundripaludum SV96]
          Length = 692

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/692 (51%), Positives = 481/692 (69%), Gaps = 4/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    E ++  R +KLETG IARQ+DGAV+     T +L TVV  +    G DFFPLTV
Sbjct: 1   MNPIRKEFQYGDRLVKLETGEIARQADGAVMIDVDGTTLLVTVVGKKQASGG-DFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE+ YA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + Y NE Q+I  V+  +
Sbjct: 60  NYQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYTNEVQIIATVVSLN 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSG 180
            E  P + +++ ASAAL +SGLPF GPV  A V Y +G+Y+LNP      +  L+L V+G
Sbjct: 120 PEVDPEIPALLGASAALAVSGLPFNGPVGAATVGYKDGEYILNPTPAALKESQLELVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T  AVLMVE EA+ LSE+V+L A++FGH + +  I AI++ A       +   + +  ++
Sbjct: 180 TAHAVLMVESEADNLSEEVMLGAVLFGHQQMQVAINAINEFAAAAGAGVVEWVAPEVNAE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L++ ++  ++  ++ +  + EK VR +Q+ +++  +V    + +  + E +I  + E ++
Sbjct: 240 LKKLVTAEVEAGIKAAYQVAEKLVRQEQLKEIRNAVVEKLVA-NGEYAESDIRGIIEHLE 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR  +L++  R+DGR+ + +R I+ + G+L RTHGS+LF RG+TQA+VV TLGT+ D
Sbjct: 299 YSIVRNAILNEGKRIDGRELDKIRPITVRTGVLPRTHGSALFTRGETQALVVATLGTQRD 358

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+L+G  +  FM+HYNF P + GE   +G+P RREIGHGRLA+R +  VLP   +F
Sbjct: 359 AQIIDALAGEYKEPFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGVAAVLPNMEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+TES+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGL+K+GD F +LSDI
Sbjct: 419 PYTIRVVSEVTESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGDSFAVLSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAG+  GITA+QMD+KI GI+  IM  AL QAK GRLHIL EM+K L
Sbjct: 479 MGDEDHLGDMDFKVAGSVDGITALQMDIKIDGITAEIMKSALDQAKHGRLHILGEMNKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S +R ++ +F PR+    I P +IR VIG GG  IR I EQTGA V++ DDG VK+AS  
Sbjct: 539 STTREEMSDFAPRIITFKIDPSKIREVIGKGGATIRSITEQTGASVDLTDDGVVKVASVD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  E AR MI  IT   EV K+Y+G+VV++MDFGAFV     +DGLVHISQ+S ERV K
Sbjct: 599 KAAGEEARRMIEEITAEVEVGKVYEGKVVRLMDFGAFVTILPGKDGLVHISQISDERVDK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            SD + EGD V VK+L+ D +G+++LSMK V+
Sbjct: 659 VSDRLNEGDVVKVKVLEIDRQGRVRLSMKEVE 690


>gi|187471092|sp|Q2IQ01|PNP_ANADE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 721

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/702 (45%), Positives = 460/702 (65%), Gaps = 12/702 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
                 G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+
Sbjct: 6   KTATVGGKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEK 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            +A G++PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+  
Sbjct: 66  LFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDT 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            V+++  ASAAL +S +PF GP+ G +V  + GQ V NP L +     LD+ ++ ++DA+
Sbjct: 126 DVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASRDAI 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEE 243
           +MVE  A ++SE V+++A++FG    +P+++A   L      +P       K+  +L  +
Sbjct: 186 VMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRRAFDPPKNDVELRAK 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSV 294
           +  +  E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   
Sbjct: 246 VKALTWEKVKEAYGRDEKHDRYGRLSEIKKELLQALKEEAAGDAAKLATIALREKEIKGY 305

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +ED++   +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TL
Sbjct: 306 YEDVKYDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTL 365

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT EDEQ V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P
Sbjct: 366 GTAEDEQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMP 425

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPYT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   
Sbjct: 426 PEDQFPYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA 485

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT +GIT++QMD+KIGG++  I+  AL QA  GR HIL E
Sbjct: 486 ILSDILGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGE 545

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K LS  R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V 
Sbjct: 546 MAKALSAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVS 605

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS +  ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS 
Sbjct: 606 IASPNQDKVEEAIKMIRGLTQEAEVGRIYMGTVRKIAEFGAFVEIFPGTDGLIHISELSD 665

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +RV   SDV+ EG+ V VK++  D  GKI+LS K    ++ K
Sbjct: 666 KRVKSVSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAK 707


>gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC
           2396]
 gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Hahella chejuensis KCTC 2396]
          Length = 703

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/697 (48%), Positives = 471/697 (67%), Gaps = 4/697 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      ++    + LETGRIARQ+ GAVL T  +TVVL T V ++    G+DFFPL+V
Sbjct: 1   MNPVRKTFQYGNSTVTLETGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+TYA G+IPGGY +RE RP+E E L SR+IDR IRPLF   + NE Q+I  VM  +
Sbjct: 61  HYQEKTYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPDGFMNEVQIICTVMSAN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPR-LDEDQGSLDLFVS 179
            +  P + S++ A+AAL +SG+PF+GP+  A+V Y +   Y+LNP     +   LD+ V+
Sbjct: 121 KDVDPDIASIIGAAAALEISGVPFQGPLAAARVGYTDEDGYLLNPGFKAIENSKLDMVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+DAVLMVE EA +L+ED +L A++F H E +  ++AI + A+   K      + +  +
Sbjct: 181 GTEDAVLMVESEAKELTEDQMLGAVLFAHQEMQVAVQAIKEFAQEAGKPKWDWQAPEVNA 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IVSVFED 297
           +L E +       +  +  I  K  R  ++ +L+++     + E     E E +   F  
Sbjct: 241 ELLEALKAKFAGSIGEAYGIRVKADRYAKLGELRQQAEEELAGEEEGKFEAELVKKYFSK 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR  ++  + R+DGRD++TVRD+  +VG+L  THGS+LF RG+TQA+V  TLGT 
Sbjct: 301 LEKACVRQNIIKGEPRIDGRDTKTVRDLKIEVGVLPNTHGSALFTRGETQALVTATLGTM 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L G +++ FM HYNF P + GE SR+G   RREIGHGRLARR +  ++P   
Sbjct: 361 RDVLMVDALEGEKKDSFMFHYNFPPYSVGEASRVGGVGRREIGHGRLARRGVQALMPNLE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R VSEITES+GSSSMA+VCGSSLALMDAG+P+  PVAGIAMGLVK+GD F +L+
Sbjct: 421 EFPYAVRCVSEITESNGSSSMASVCGSSLALMDAGIPVKAPVAGIAMGLVKEGDSFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL+QA   RLHIL EM+K
Sbjct: 481 DILGDEDHLGDMDFKVAGTEKGVTALQMDIKINGITDEIMEIALEQALHARLHILGEMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+SE R  + +  P++E + I PD+IR+VIG GG  IR I E TGA ++IDD+GTV+I +
Sbjct: 541 VISEPRDSVADNAPKMETIKIDPDKIRDVIGKGGATIRSICEDTGASIDIDDNGTVRIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    + A   I  IT   EV K+Y+G+V ++++FGAFV+    +DGLVHISQ++ ERV
Sbjct: 601 ESKLAADEAIYRITEITAEAEVGKLYRGKVERIVEFGAFVNILPGKDGLVHISQIAQERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
              +D +KEG  V VK+LD D RG+IKLSMK V ++ 
Sbjct: 661 ENVTDYLKEGQEVVVKVLDIDARGRIKLSMKEVTEDE 697


>gi|293374237|ref|ZP_06620565.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
           PC909]
 gi|325845651|ref|ZP_08168935.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
 gi|292647070|gb|EFF65052.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
           PC909]
 gi|325488349|gb|EGC90774.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
          Length = 701

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/700 (45%), Positives = 463/700 (66%), Gaps = 4/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M + H    E AGRPL  E G +A+Q++ +VL  YG+TVVL+T V  +  KD  DFFPLT
Sbjct: 1   MSEKHVYSFELAGRPLSFEIGELAKQANASVLVRYGDTVVLSTCVASKEPKD-IDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           + Y+ER YAVGK+PGG+++RE RP+E+ +L  R+IDR IRPLF   ++N+ QVI  VM  
Sbjct: 60  IGYEERLYAVGKVPGGFIKREGRPSEHAVLSGRLIDRPIRPLFPDGFRNDVQVINYVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++SP + +M+ +S +L +S +PFEGP+ G  V  ++G++++NP ++E ++  +DL V+
Sbjct: 120 DHDNSPAIAAMIGSSLSLSISDIPFEGPIAGVVVGRVDGKFIINPTVEELEKSDIDLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DA+ MVE  A ++ E+ +L+AI+FGH   K ++    ++     +  + ++  +   
Sbjct: 180 GTKDAINMVEAGAKEVPEEDMLEAIMFGHEMIKQIVAFQEQIVAEIGQPKMDLNLYEVDA 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
            +   + +M + D+  +  + EK+ R + ID +  +++  F SE +S  E  ++  V   
Sbjct: 240 TINARVREMAEADMLAAIQVVEKHARQEAIDAVNARVLDVFESEEASDKELKQVKEVLNK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  + VR ++ D+KVR DGR  + +R +S++V LL RTHGS+LF RG TQA+ V TLG  
Sbjct: 300 IVKEEVRRLITDEKVRPDGRKIDEIRPLSSRVDLLPRTHGSALFTRGQTQALSVCTLGAL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L   +   FM HYNF P + GE  R GAP RREIGHG L  RA+  V+P   
Sbjct: 360 NEHQMLDGLEVEETKRFMHHYNFPPFSVGETGRYGAPGRREIGHGALGERALKQVMPSEK 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSE+ ES+GS+S A++C S++ALM AGVPI  PVAGIAMGLVK G+++ +L+
Sbjct: 420 DFPYTVRLVSEVLESNGSTSQASICASTMALMAAGVPIKAPVAGIAMGLVKKGENYTVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  G+TA+QMD+KI G++  I+  ALQQAK GR+ ILN M  
Sbjct: 480 DIQGMEDHLGDMDFKVAGTAKGVTALQMDIKIEGLNRQILEEALQQAKVGRMQILNHMLG 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SE+R +L  F P+++++ I  D+IR+VIG GGK I  I+++TG K++I+ DGTV I  
Sbjct: 540 TISETREELSAFAPKIKVITIKVDKIRDVIGPGGKQINEIIDKTGVKIDIEQDGTVYILH 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +   I  A  MI  I    EV KIY G+VV++  FGAFV     +DGLVHISQL+ ERV
Sbjct: 600 DNSQNINQAVAMIEDIVREVEVGKIYLGKVVRIEKFGAFVEIFPGQDGLVHISQLAEERV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           AKT DVV  GD + VK+ + D+RG++ LS K   +     
Sbjct: 660 AKTEDVVAIGDEILVKVTEVDERGRVNLSRKEAMKEQAAE 699


>gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
 gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
          Length = 719

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/708 (46%), Positives = 470/708 (66%), Gaps = 16/708 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  +   ++    + LETG +ARQ+ GAVL T  +TVVL +VV  +++K GQDFFPLT
Sbjct: 1   MFNKISKTFQYGRHTVTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  VM  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E    + +M+ ASAAL +SGLPF GP+  A+V Y NG Y+LNP   E + S LDL V+
Sbjct: 121 NPEIDSDIPAMIGASAALAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKD 236
           GT  AVLMVE EA +L E V+L A++FGH++ +  I+AI++LA      P++ D      
Sbjct: 181 GTHRAVLMVESEAKELPEAVMLGAVVFGHDQLQAAIKAINELADEV--NPVMWDWSAPAQ 238

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVF 295
             +L  ++ ++  E +  +  I +K  R + + +    + +   +E +      EI  +F
Sbjct: 239 NDELIAKVREVSGEKIANAFRIRQKQARTQVLAEAWADVKAALINEETDTLTANEIKGIF 298

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++A++VR  +L  + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV TLG
Sbjct: 299 KSLEAEIVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLG 358

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T+ DEQ +D+L+G   + FM+HYNF P +TGE  RMG P RREIGHGRLA+RA+  VLP 
Sbjct: 359 TQRDEQIIDALAGEYTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQVLPS 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +F Y++R+VSEITES+GSSSMA+VCG  LAL++AGVP+   VAGIAMGL+ +G+ F +
Sbjct: 419 ADEFGYSMRVVSEITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK GRLHIL  M
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +     QL    PR+ +M I PD+IR VIG GG+ IR I + TG ++NI++DGT+ I
Sbjct: 539 KEAVEGP-QQLSTHAPRLFVMKINPDKIREVIGKGGETIRSITKDTGTEINIEEDGTITI 597

Query: 596 ASSSLAEIEA-------AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           AS +             A       +   +  + ++G+  +  + GA V     +DGLVH
Sbjct: 598 ASVTQXXXXKVLMPXQEAHRGNHRRSRSRQDLRRHRGEDSR-HNVGAIVSILPGKDGLVH 656

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           ISQ++ ER+   SD +KEG  V VK ++ DDRG+I+LS+K + ++  K
Sbjct: 657 ISQIANERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEDEAK 704


>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 701

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/691 (41%), Positives = 439/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+D V+M+E  A ++ ED++L+AI+    E K ++E I  + K   K  +  + +   + 
Sbjct: 181 TKDKVMMIEAGAQEIPEDIMLEAIMTAQEEIKKIVEFIEGIVKEVGKPKMQYEKRVVPEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  E       IP+K  R K++D+LK++++  F  E        +     +++
Sbjct: 241 IKQKVRELAYEKAYQYVQIPDKIERDKKLDELKEEVLKAFEGETED-TLLLVDDALYNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPYSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ K+   FI L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFITLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAKTNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL  +++ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDNKKLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G+I LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDRLGRIALSRKE 690


>gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp.
           3_1_5R]
          Length = 743

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/706 (44%), Positives = 460/706 (65%), Gaps = 14/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+E+E AGR LK+ TG+IARQS GAV+  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 37  MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 96

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  L++R+IDR IRP+F + +  +  ++  V   
Sbjct: 97  VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 156

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++ +S AL +S +PF GPV G  V YI+G+++LNP  ++ + SL DL V+
Sbjct: 157 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSLLDLSVA 216

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K +     +  K+C KE I  + ++   
Sbjct: 217 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 276

Query: 240 LEE-EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--------- 289
           +    + +   E L+ +     K  R + +D L+++++S F ++                
Sbjct: 277 VISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIAKQYPDVAEEEIPEEPIL 336

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
                + D+  K+VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 337 AFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 396

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT++DEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA RA+
Sbjct: 397 ATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERAL 456

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+
Sbjct: 457 RYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKE 516

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R 
Sbjct: 517 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHVARQ 576

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S     L    PR++ + IP D+I  +IG GGK I+GI+E+TG+ ++I D
Sbjct: 577 QILEVMNTAISSP-ADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTIDITD 635

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S  L  +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL+HI
Sbjct: 636 DGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGLLHI 695

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694
           S++S ERVA   DV+K GD   VK++  D+ GKI LS K ++ +NT
Sbjct: 696 SEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLELENT 740


>gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 711

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/699 (46%), Positives = 469/699 (67%), Gaps = 7/699 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E  GR L  E  ++A Q+ GAV A YG+T VL T V    L++G DF PLTV+Y 
Sbjct: 14  KTFEVEVGGRILAFEIDKMAAQASGAVFARYGDTGVLVTAVASDRLREGIDFLPLTVDYL 73

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           E +YA G+IPGG+ RRE  RP+E E L SR+IDR IRPLF K + +E Q+I  V+  D+E
Sbjct: 74  EMSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKGFFHELQIIATVLSVDME 133

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           + P ++++  ASAAL +S +PF+GP+   ++  + G+ ++NP + +  + +L+L V+G+ 
Sbjct: 134 NDPDIIALNGASAALAISDIPFQGPIAAVRMGKVGGELMVNPTISQLKESTLNLIVAGSN 193

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA++MVE  A   SE+ +L+A+   H E +P++    ++     K    +      + L+
Sbjct: 194 DALVMVEGGAELASEEEILEALFTAHAEMQPILRLQEQMRVEAGKTKRPVSEIIIDETLK 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             + ++ +  +  +    EK VR + ++D  + +++   SE+    E EI   + D++  
Sbjct: 254 TRVEELSRALILQAIAQAEKKVRHQAMEDGLQTVLTTLESEYEG-REKEITGFYHDLEKT 312

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++K R+DGR    +R IS +VGLL RTHGS+LF RG+TQA+ V TLGT  DEQ
Sbjct: 313 LVRDLVLNQKRRIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVSDEQ 372

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +++L+G     FM+HYNF P + GE   +  PSRREIGHG LA RA+  VLPQ  +FPY
Sbjct: 373 RIETLTGDTFKAFMLHYNFPPYSVGETRMLRGPSRREIGHGALAERALSRVLPQPEEFPY 432

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI  S+GSSSMATVCG SLA+MDAG+PI  PVAG+AMGL+K+ ++  ILSDI G
Sbjct: 433 TIRVVSEILSSNGSSSMATVCGGSLAMMDAGIPIKAPVAGVAMGLIKEENNIAILSDILG 492

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT +GITA+QMD+KIGGI+  IM  AL QA+  RLHIL+ M++ + +
Sbjct: 493 DEDHLGDMDFKVAGTAAGITALQMDIKIGGINREIMSQALHQAREARLHILSRMNEAIDQ 552

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R QL E  P++ +M I PD+IR VIG GGK ++ IV  TGAK++I+DDG + IAS    
Sbjct: 553 PRTQLKENAPKIVVMTINPDKIREVIGPGGKTVKNIVAVTGAKIDIEDDGRIHIASPDAL 612

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A  MI+ +T  PE+ ++Y+G+V K++DFGAFV      DGLVHIS+L  +RV K +
Sbjct: 613 AANQAIRMIQELTQEPEIGQLYRGKVKKIVDFGAFVEILPGTDGLVHISELDKQRVKKVT 672

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV---VDQNTGKP 697
           D++KEGD V VK+LD D +GKI+LS K    +DQ++  P
Sbjct: 673 DILKEGDEVLVKVLDVDRQGKIRLSRKAALDLDQDSVNP 711


>gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
 gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
          Length = 708

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/691 (44%), Positives = 456/691 (65%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     ++ AGR L++E G++A+Q++GA L  YG+TVVL+T    +  K   DFFPLTVN
Sbjct: 4   EKRVFSVDLAGRKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PFEGP+ G  V  ++ ++V+NP +DE ++  + L V+GT
Sbjct: 123 NCSSEIAAMFGSSLALSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDIHLTVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+V+L+AI+FGH + K +I    ++     KE + ++     + L
Sbjct: 183 KDAINMVEAGADEVPEEVMLEAIMFGHEQIKKLIAFQEEIVAAVGKEKVEVELYTVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQ 299
           E ++ ++ + D+  +  + EK+ R   I ++K  + + F  +        ++  +   + 
Sbjct: 243 ERQVREIAEGDMNRAVQVQEKHARENAIKEVKSAVAAKFEEQDVEEEVLNQVNEILSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++  LL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KSEVRRLITEEKVRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D LS  +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLSVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT++G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTENGVTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S  
Sbjct: 543 ATPRQELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSID 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K
Sbjct: 603 QPMNEKAKKIIEDLVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERIGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK+++ D +G++ LS K +
Sbjct: 663 VEDVVSIGDEILVKVMEIDKQGRVNLSRKAI 693


>gi|120556251|ref|YP_960602.1| polynucleotide phosphorylase/polyadenylase [Marinobacter aquaeolei
           VT8]
 gi|187610283|sp|A1U5Z6|PNP_MARAV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120326100|gb|ABM20415.1| Polyribonucleotide nucleotidyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 722

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/693 (50%), Positives = 469/693 (67%), Gaps = 4/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 E  G    LETGRIARQ+ GAVL + G+T VL TVV  +  K GQ FFPLTVNY
Sbjct: 21  PRIKTFEMGGETFTLETGRIARQATGAVLVSTGDTAVLGTVVGAKEPKPGQGFFPLTVNY 80

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF   Y NE QV++ VM     
Sbjct: 81  QEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTVMSASKN 140

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQGSL-DLFVSGT 181
             P + +M+AASAAL +SG+PF+GP+  A+V Y N + Y LNP  +E   SL D+ V+GT
Sbjct: 141 HDPDIAAMIAASAALAISGIPFDGPIGAARVGYTNEKGYFLNPTFEELSTSLLDMVVAGT 200

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKL 240
            +AVLMVE EA  L+ED +L A++FGH E +  I AI + A    K       + + ++L
Sbjct: 201 DEAVLMVESEAKGLTEDQMLGAVLFGHQEMQTAITAIKEFAAENGKPRWEWQPEAENTEL 260

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IVSVFEDIQ 299
              +       +  +  I +K  R +++ ++K   V   + E       E +   F  ++
Sbjct: 261 LNAIKAEFGGAIEEAYAIRDKMARYERLGEIKSAAVEKLAGEEEGQPSEEEVKKYFGKVE 320

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             VVR  +++ K R+DGRD++TVR I  +VG+L   HGS+LF RG+TQAIV  TLGT  D
Sbjct: 321 KSVVRLQVIEGKPRIDGRDNKTVRPIKVEVGVLPSVHGSALFTRGETQAIVTATLGTTRD 380

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+L G +++ F+ HYNF P + GE  RMG+P RREIGHGRLA+R +  V+P   +F
Sbjct: 381 VQIIDALEGERKDPFLFHYNFPPYSVGEAGRMGSPGRREIGHGRLAKRGVAAVMPTIEEF 440

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+GD F +L+DI
Sbjct: 441 PYAIRAVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDKFAVLTDI 500

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL+QA   RLHIL+EM+KV+
Sbjct: 501 LGDEDHLGDMDFKVAGTKEGVTALQMDIKIQGITDEIMEIALEQANAARLHILDEMNKVI 560

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L +  P +  + I PD+IR+VIG GG  IRGI ++TGA +++DDDG VKI + +
Sbjct: 561 AEPRAELSDRAPSITTIKIHPDKIRDVIGKGGATIRGICDETGASIDLDDDGNVKIYADN 620

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  +AA   ++ IT   EV  IYKG+V +++DFGAFV+    +DGLVHISQ+S  R+  
Sbjct: 621 AAAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISERRIEN 680

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +D + EG  V VK+LD D+RG++KLSMK V +
Sbjct: 681 VTDELSEGQEVLVKVLDVDNRGRVKLSMKEVKE 713


>gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum
           thermopropionicum SI]
 gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum
           thermopropionicum SI]
          Length = 734

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/709 (46%), Positives = 466/709 (65%), Gaps = 19/709 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T EI   GRP+ LETGR+A Q+ GAV   YG+T VL T     +++ G DFFPLTV+Y
Sbjct: 6   ILTREIIVGGRPMILETGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPGG+++RESRP+E  IL  R+IDR IRPLF K  +NE QVI  ++  D +
Sbjct: 66  EERFYAVGKIPGGFIKRESRPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQD 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P + +MV ASAAL +S +P + P+ G  V  ++G++V+NP L + ++  + L V+GT+
Sbjct: 126 NAPEIAAMVGASAALHISEIPLKFPIGGVIVGRVDGRFVINPVLAQAEKSDMHLVVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVID-SKD 236
           DAV+MVE  A ++ E+V+L+AI FGH   K ++  I +  +       AKE +VI+ ++ 
Sbjct: 186 DAVMMVEAGAKEVPEEVILEAISFGHETVKEIVAFIERYREEALEMGLAKEKMVIEVAEP 245

Query: 237 FSKLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
              L E ++    E L             K  R   ++++K +++  F +++    E  I
Sbjct: 246 DPVLVEAVTGPATEKLDGVLRRCVNERLSKQERDSLLNNIKDELMQKFLADYPEQ-ESLI 304

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             + + I+ K+VR ++ ++ +R+DGR    VR IS +VG+L R HGS LF RG TQ + V
Sbjct: 305 KDLLDSIEKKLVRRMITEEGLRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQTQILSV 364

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           VTLGT  +EQ +D L   +   FM HYNF P +TGE   + +P RREIGHG LA RA+  
Sbjct: 365 VTLGTVSEEQILDGLGVEESKRFMHHYNFPPYSTGETRPLRSPGRREIGHGALAERALAA 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P   +FPYT+RIVSE  ES+GS+SM +VCGS+LALMDAGVPIS PVAG+AMGL+K+GD
Sbjct: 425 VIPGEEEFPYTIRIVSEALESNGSTSMGSVCGSTLALMDAGVPISAPVAGVAMGLIKEGD 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  +   AL QA  GR+HI
Sbjct: 485 NFTVLTDIQGFEDHLGDMDFKVAGTAKGITALQMDIKIPGITREVFEKALAQAYEGRMHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           LN+M +VL   R +L    PR+  + I PD+IR+VIG GGKVI+ IVE+TGA+++I+DDG
Sbjct: 545 LNKMLEVLPAPRPELSPHAPRIIHITIDPDKIRDVIGPGGKVIKKIVEETGAEIDIEDDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG------ARDG 645
            V IA+    +   A+E+I ++T   +  +IY G+V ++ DFG FV           ++G
Sbjct: 605 RVFIAAVDQEKGRKAQEIIETLTKEVQTGEIYTGRVTRITDFGCFVEIIPGVLGMQGKEG 664

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           LVHISQL+  RV +  DVVKEGD + VK+  +D +G++KLS K      
Sbjct: 665 LVHISQLAHHRVNRVEDVVKEGDVILVKVTGYDSQGRLKLSKKEATPPP 713


>gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
 gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
          Length = 707

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/706 (44%), Positives = 460/706 (65%), Gaps = 14/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+E+E AGR LK+ TG+IARQS GAV+  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  L++R+IDR IRP+F + +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++ +S AL +S +PF GPV G  V YI+G+++LNP  ++ + SL DL V+
Sbjct: 121 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSLLDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K +     +  K+C KE I  + ++   
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 240

Query: 240 LEE-EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--------- 289
           +    + +   E L+ +     K  R + +D L+++++S F ++                
Sbjct: 241 VISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIAKQYPDVAEEEIPEEPIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
                + D+  K+VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 AFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT++DEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA RA+
Sbjct: 361 ATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+
Sbjct: 421 RYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R 
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHVARQ 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S     L    PR++ + IP D+I  +IG GGK I+GI+E+TG+ ++I D
Sbjct: 541 QILEVMNTAISSP-ADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTIDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S  L  +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL+HI
Sbjct: 600 DGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694
           S++S ERVA   DV+K GD   VK++  D+ GKI LS K ++ +NT
Sbjct: 660 SEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLELENT 704


>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 701

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/691 (41%), Positives = 439/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+D V+M+E  A ++ ED++L+AI+    E K ++E I  + +   K  +    +    +
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPDE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  + +     IP+K  R K++D+LK+++   F  E +      +     +++
Sbjct: 241 IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGE-TEETLLLVDDALYNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   R+ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G++ LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDKLGRLSLSRKE 690


>gi|315639994|ref|ZP_07895121.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
           DSM 15952]
 gi|315484256|gb|EFU74725.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
           DSM 15952]
          Length = 707

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/695 (43%), Positives = 449/695 (64%), Gaps = 10/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                  W GRPL +E G++A+Q++GAVL  YG+TVVL+  V  +  KD  DFFPLT+NY
Sbjct: 3   KQVFSTTWGGRPLSVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDT-DFFPLTINY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QV   VM  + +
Sbjct: 62  EEKMYAVGKIPGGFIKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            SP + +M+ +S AL +S +PF+GP+ G  V  +NG+YVLNP +++ ++  + L V+GT 
Sbjct: 122 CSPAMAAMLGSSLALSISDIPFDGPIAGVDVGRVNGEYVLNPTVEQNEESDIHLTVAGTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            A+ MVE  A ++SE  +L A++FGH   + ++    ++     K  + I      + ++
Sbjct: 182 QAINMVESGAKEVSEADMLGALLFGHEAIQELVAFQKEVVAAVGKPKMEITLLQVDEQVK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-------EHSSWNEGEIVSV 294
           + +       ++ +    EK  R  +I  +K+ +   ++        + +S    E+  +
Sbjct: 242 KAIYDEFYPTMKTAVMTEEKLAREDEIAKVKEIVKEAYAEKALALADDEASKLTKEVKQI 301

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            ED++  VVR ++   K+R DGR  + +R +S++VGLL R HGS LF RG TQA+   TL
Sbjct: 302 AEDLEKDVVRELITIDKIRPDGRQLDEIRALSSEVGLLPRVHGSGLFTRGQTQALSTCTL 361

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   F+ HYNF   + G   R G+P RREIGHG L  RA+  ++P
Sbjct: 362 APLGEHQIIDGLGVEESKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++ 
Sbjct: 422 DETDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYT 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL E
Sbjct: 482 ILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILREALAQAKKARMEILEE 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           ++  + + R +L ++ P++E++ I P +I++VIG GG  I GI+E+TG K++ID DG V 
Sbjct: 542 LTATIDQPRAELSQYAPKIEMIQIDPAKIKDVIGKGGDTINGIIEETGVKIDIDQDGKVS 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS+    I+ A ++I  +T   +V ++Y G+VV+V  FGAFV+    +DGLVHISQL+ 
Sbjct: 602 IASADAEMIKKAIKIIEDLTKEVKVGEVYLGKVVRVEKFGAFVNLIKGKDGLVHISQLAN 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           ERVA   DVVK GD V VK+ + D +G++ LS K 
Sbjct: 662 ERVANVEDVVKLGDEVLVKVTEIDKQGRVNLSRKA 696


>gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 701

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/691 (41%), Positives = 439/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+D V+M+E  A ++ ED++L+AI+    E K ++E I  + +   K  +    +    +
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPDE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  + +     IP+K  R K++D+LK+++   F  E +      +     +++
Sbjct: 241 IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGE-TEETLLLVDDALYNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMKTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRNELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   R+ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G++ LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDKLGRLSLSRKE 690


>gi|308272445|emb|CBX29049.1| Polyribonucleotide nucleotidyltransferase [uncultured
           Desulfobacterium sp.]
          Length = 697

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/700 (45%), Positives = 449/700 (64%), Gaps = 7/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M + + V  +  G+ L ++ G++A+Q+ G+V   YG+TVVL T V     + G DF PL+
Sbjct: 1   MINTYRV--DLGGKTLTIQAGKLAKQASGSVTVQYGDTVVLVTAVSSYEERPG-DFLPLS 57

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V YQE+ YA G+IPG Y RRE  RP+E E L SR+IDR IRPLF K Y  E QVI  V+ 
Sbjct: 58  VEYQEKIYAAGRIPGNYFRREIGRPSEKETLTSRLIDRPIRPLFPKGYSCEIQVIATVLS 117

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D E+ P +++M+ ASAAL +S +PF GPV   +V    GQ ++NP + E +   +++ +
Sbjct: 118 MDHENDPDILAMIGASAALEISDIPFAGPVASVRVIRKEGQLIVNPTIQECEGSDINIII 177

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +G++  V+MVE  +N +SE  +L+AI +GH   +P+I+    L +           K+  
Sbjct: 178 AGSKTGVVMVEGGSNMVSEKDMLEAIFYGHEAMQPIIDIQHNLRETNGVPKRNYTEKEKD 237

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
               E++  +    LR +  IP K  R   +  LK ++      +++   + E   +F D
Sbjct: 238 QAFVEKIEAIAATRLRENLIIPGKIERHSALRALKSELFEQLGPDYTD-RKPEFYEIFYD 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q K+ R +++ +  R+DGR  + +R I+ +VGLL R HGS+LF RG+TQ + V+TLG+ 
Sbjct: 297 LQKKISRDLIIKEGRRIDGRKFDEIRPITCEVGLLPRPHGSALFTRGETQVLAVLTLGSG 356

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ V++LSG +   FM+HYNF P + GE  R+G PSRR+IGHG L+ RAI  +LP   
Sbjct: 357 PDEQRVETLSGEELRPFMLHYNFPPYSVGETKRLGGPSRRDIGHGGLSTRAIERILPPKE 416

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +F YT+R+VSE+ ES+GSSSM TVC  ++ALMD GVPI  PV+GIAMGLVK+GD  +ILS
Sbjct: 417 EFDYTIRLVSEVLESNGSSSMGTVCSGAMALMDGGVPIKSPVSGIAMGLVKEGDQVVILS 476

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDH G MDFKV GT  GITA+QMD+KI  +   I+  AL+QA+ GR+ IL +M +
Sbjct: 477 DILGDEDHSGDMDFKVTGTRDGITALQMDIKIHELPRTILENALEQARTGRIFILEKMLE 536

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S+ R ++    P +  + + PD+IR +IG GGK IR I  +T  +V IDD G VKIA+
Sbjct: 537 AISQPREKISPHAPAIITIKVHPDKIREIIGPGGKTIRYIQSETNTRVEIDDYGLVKIAA 596

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S  +  AA  +I +IT  PEV  +Y G VVK+MDFGAFV      DGLVHISQLST RV
Sbjct: 597 TSKEDGAAALNLINNITMEPEVGAVYDGTVVKIMDFGAFVQIMPGTDGLVHISQLSTRRV 656

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K SDVVKEGD + VK+L+    GKI+LS K V ++   P
Sbjct: 657 TKVSDVVKEGDIIKVKVLEISKDGKIRLSHKAVLEDENVP 696


>gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319]
 gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319]
          Length = 708

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/691 (44%), Positives = 455/691 (65%), Gaps = 4/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +     ++ AGR L++E G++A+Q++GA L  YG+TVVL+T    +  K   DFFPLTVN
Sbjct: 4   EKRVFSVDLAGRKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPK-NVDFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+++RE RP+E  IL SR+IDR IRPLF+  ++NE QV+  VM  D 
Sbjct: 63  YEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQ 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             S  + +M  +S AL +S +PFEGP+ G  V  ++ ++V+NP +DE ++  + L V+GT
Sbjct: 123 NCSSEIAAMFGSSLALSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDIHLTVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA+ MVE  A+++ E+V+L+AI+FGH + K +I    ++     KE + +      + L
Sbjct: 183 KDAINMVEAGADEVPEEVMLEAIMFGHEQIKKLIAFQEEIVAAVGKEKVEVALYTVDADL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQ 299
           E ++ ++ + D+  +  + EK+ R   I ++K  + + F  +        ++  +   + 
Sbjct: 243 ERQVREIAEGDMNRAVQVQEKHARENAIKEVKSAVAAKFEEQDVEEEVLNQVNEILSKLV 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ ++KVR DGR  + +R +S++  LL RTHGS LF RG TQA+ + TLG   D
Sbjct: 303 KSEVRRLITEEKVRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D LS  +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    F
Sbjct: 363 VQILDGLSVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPNEKDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GS+S A++C S+LA+MDAGVPI  PVAGIAMGL+K G+ + IL+DI
Sbjct: 423 PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILTDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT++G+TA+QMD+KI G+S  I+  ALQQAK+GR+ ILN M   +
Sbjct: 483 QGMEDHLGDMDFKVAGTENGVTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMSTI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ P++  MAI PD+IR+VIG  GK I  I+E+TG K++I+ DGT+ I+S  
Sbjct: 543 ATPRQELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSID 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A+++I  +    EV ++Y G+V ++  FGAFV     +DGLVHIS+L+ ER+ K
Sbjct: 603 QPMNEKAKKIIEDLVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERIGK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVV  GD + VK+++ D +G++ LS K +
Sbjct: 663 VEDVVSIGDEILVKVMEIDKQGRVNLSRKAI 693


>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
 gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
          Length = 701

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/691 (41%), Positives = 439/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+D V+M+E  A ++ ED++++AI+    E K ++E I  + K   K  +    +   + 
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMIEAIMTAQEEIKKIVEFIEGIVKEVGKPKMEYQKRIVPEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  + +     IP+K  R K++D+LK+++   F  E +      +     +++
Sbjct: 241 IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGE-TEETLLLVDDALYNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ K+   FI+L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFILLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G++  I+  AL QAK  RL IL+ M  +
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTI 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL  +R+ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDEKRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G++ LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDKLGRLSLSRKE 690


>gi|254521573|ref|ZP_05133628.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
           SKA14]
 gi|219719164|gb|EED37689.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
           SKA14]
          Length = 702

 Score =  777 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/693 (50%), Positives = 477/693 (68%), Gaps = 4/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E   S L+L V+GT 
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI AI++L      +P   ++      L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + I   L  +  + +K  R   I  +KK +V   +       WN  E+   F +++
Sbjct: 243 SALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVVETLAGRVAAEGWNPAELSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  +TVR I+ + G+L RTHGSSLF RG+TQAIV +TLGT  D
Sbjct: 303 YRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P    F
Sbjct: 363 GQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLEAF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GI+A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHGL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TAPRSELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S++RV K
Sbjct: 603 AIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             DV+KEGD V VK+L+ D +G+I+LSMK V++
Sbjct: 663 VGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEE 695


>gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
 gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
          Length = 825

 Score =  777 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/695 (41%), Positives = 444/695 (63%), Gaps = 9/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T ++ +AG+PL +E G++A+Q++GA +  YG++ VL      + +    DFFPL VNY
Sbjct: 3   KQTFQMTFAGKPLVVEIGQVAKQANGAAVVHYGDSTVLCAATMSKKM-ARTDFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRPLF++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M A+S AL +S +PFEGP+ G QV Y++G++++NP   + + S LDL V+GT+
Sbjct: 122 ASAPMAAMFASSLALCISDIPFEGPIAGVQVAYLDGEFIINPTAQQKEASNLDLTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  S+L 
Sbjct: 182 DAINMVESGAQELSEDIMLEALLKGHQAIQELIAFQEEIVATLGKEKAEVEFLQVDSQLR 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
           +E+      DL+ +  + EK  R +    +K ++++ +   ++   E E     +    E
Sbjct: 242 DEIVATYTSDLQKAVQVQEKLAREEATQAVKDQVLASYEERYADDEELERILRDVSESLE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++   VR ++ + K+R DGR  + +R + A+V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 EMEHAEVRRLITEDKIRPDGRQVDEIRPLEAEVDFLPQVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + + VD L    R  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSESKIVDGLDPEYRKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSF 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL
Sbjct: 422 EDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPEILKEALAQAKKARYEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++ID++G V+I 
Sbjct: 542 QTIPAPRPELAPTAPKIDTIKIALDKIKVVIGKGGETIDKIIEETGVKIDIDEEGNVQIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIY-KGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S     I+ A+E+I ++    ++ ++Y + +VV++  FGAFV+     D LVHIS+L+ E
Sbjct: 602 SPDQDAIDRAKEIIANLVREAKIGEVYPEAEVVRIESFGAFVNLFDKTDALVHISELAWE 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           R  +  DVVK GD V VK+L  DD+G++  S+K +
Sbjct: 662 RTNRVEDVVKLGDKVAVKVLKIDDKGRVNASIKAL 696


>gi|269120588|ref|YP_003308765.1| polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
           ATCC 33386]
 gi|268614466|gb|ACZ08834.1| Polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
           ATCC 33386]
          Length = 710

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/700 (43%), Positives = 457/700 (65%), Gaps = 7/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  + E++   + +K+ +G+IARQ+ GAV+   G+TV+L T    + +++G DFFPLT
Sbjct: 1   MFNEKSYELKIGEKTVKISSGKIARQASGAVIVECGKTVLLVTATRSKEVREGTDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RESRP+ +E+LI+R+IDR IRPLF + +     ++I V+  
Sbjct: 61  VDYIEKFYASGKFPGGFIKRESRPSTDEVLIARLIDRPIRPLFPEGFFYGVHIVITVISF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D  + P  ++ +  SAAL +S +PF GPV G  V YI+G++VLNP  +E +   ++L V+
Sbjct: 121 DEVNLPENLATLGVSAALSISDIPFAGPVGGVNVGYIDGKFVLNPTPEELEISDIELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT DAV MVE  AN++ ED++L+AI+FGH + K + E   K         +  +  +   
Sbjct: 181 GTADAVTMVEAGANEIPEDIMLEAIMFGHGKIKEMCEEQEKFISQFEVNKMEFEVAEVNP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-----EGEIVS 293
           +++  + +   E+L  +     K+ R   ID L  +++  FS+ + +         E  +
Sbjct: 241 EVKSFIDEKATEELGAAIEKHGKHERDDAIDALFDRLLEEFSASYENNEIPADIAKEFKN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + D+  K+VR  +L KK R DGR +E +R I  ++  L   HGS+LF RG+TQA+V VT
Sbjct: 301 YYHDLMKKMVRESILYKKNRPDGRKTEEIRPIDVEIDTLPIPHGSALFTRGETQALVTVT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+R +EQ VD +    R  F +HYNF P + GE   M AP RRE+GHG LA RA+  ++
Sbjct: 361 LGSRVNEQIVDGMEEESRKKFYLHYNFPPYSVGEAGFMRAPGRRELGHGSLAERALKYMI 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+   FPYT+R+VSEITES+GSSS A++CG SLALM AGVP+   VAGIAMGL+K+ ++F
Sbjct: 421 PEQEDFPYTIRVVSEITESNGSSSQASICGGSLALMAAGVPMKSSVAGIAMGLIKENEEF 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+  IM +AL+QA  GR+ IL+
Sbjct: 481 VVLTDIQGLEDHLGDMDFKVAGTKNGITALQMDIKITGITREIMEIALKQAHNGRMFILD 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+ V+ E R  + E  P++  M I P +I  +IG GGK I+ I++QTGA ++I+DDG+V
Sbjct: 541 KMNAVIPEPRKDVSENAPKIHFMKIDPSKIAILIGPGGKTIKSIIDQTGATIDIEDDGSV 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I     + ++   E+++S T   E+N +Y G+VVK+  FGAFV     ++GL+HIS++ 
Sbjct: 601 AIFVKEKSSLDKTIELVKSYTQSVELNAVYTGRVVKIAKFGAFVEVLPGKEGLLHISEIK 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ERV K  DV+KEG  + VK++  +D  K  LSMK ++  
Sbjct: 661 KERVNKVEDVLKEGQIIKVKVIGMEDENKFNLSMKALENE 700


>gi|312901916|ref|ZP_07761179.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0470]
 gi|311290983|gb|EFQ69539.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0470]
          Length = 704

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/704 (42%), Positives = 458/704 (65%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++++ ++A++++GAVL  YG+TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVKSAQLAKKANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
          Length = 711

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/689 (42%), Positives = 441/689 (64%), Gaps = 3/689 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               + ++ GR L +E G +A+ ++G+V  +YG+T +L      +  K+G DFFPL+V Y
Sbjct: 2   KKVFKTDFLGRELCVEVGELAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+L+RE R +E   L  R+IDR +RPLF K ++N+ Q++  VM  D +
Sbjct: 62  EEKMYSVGKIPGGFLKREGRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +SP + S++ AS AL +S +PF+GPV    V  I+G+ V NP  D+     L L V+GT 
Sbjct: 122 NSPEITSILGASLALGISDIPFDGPVGAVNVGLIDGELVYNPTSDQRDISDLSLTVAGTS 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           +AVLMVE  AN++SE++++DAI+  H   K +I+   ++ K    E   I     S+  +
Sbjct: 182 EAVLMVEAGANEVSEEIMIDAIMGAHEHIKEIIKFQEEIIKEVGVEKADITYYRTSEEIK 241

Query: 243 EMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E      K+  R +  I EK  R  +++++K +++  +  E+   N+ +   +F  +  +
Sbjct: 242 EKIYEEAKKGFREAYDIHEKQAREDRVEEVKAEILDKYLEEYPD-NKLDFEEIFAKLLKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++ ++ +R DGR  + +R I+ +VG ++R HGS LF RG TQ + + TLG   DEQ
Sbjct: 301 IVRGMITNEGIRPDGRKVDEIRPITCEVGKIRRAHGSGLFTRGQTQVMSMATLGAIRDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       ++ HYNF   + GE   M  P RREIGHG LA RA+ PV+P    FPY
Sbjct: 361 IIDGIGEETSKKYIHHYNFPAYSVGETGPMRGPGRREIGHGALAERALLPVIPDQKDFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+  S+GS+S A+VCGS+L+LMDAGVPI  PVAGIAMGL+K+ +   +LSDI G
Sbjct: 421 TIRVVSEVLASNGSTSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIKEENKVSVLSDIQG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAGT  GITA+QMD+KI GI + I+  AL +AK+GR HIL +M + ++ 
Sbjct: 481 VEDFYGDMDFKVAGTSEGITAIQMDIKIKGIDKAILTEALARAKKGRFHILGKMEEAITA 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + ++ P++  M I  D+I++VIG GGK+I  I+++TG K++I DDG   +++  L 
Sbjct: 541 PREDVSKYAPKIMTMKIAEDKIKDVIGPGGKMINKIIDETGVKIDILDDGQTFVSAVDLD 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + + A ++I  IT   E    Y G+V +VMDFGAFV   G ++GLVHIS+++ ERV K +
Sbjct: 601 DAKKAVQIIEDITREVEEGDTYVGKVARVMDFGAFVEIPGGKEGLVHISKIAHERVNKVT 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+  GD V VK+++ D +G+I LS K +
Sbjct: 661 DVLNVGDEVNVKVIEIDKQGRINLSRKAL 689


>gi|71064655|ref|YP_263382.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter arcticus
           273-4]
 gi|123761801|sp|Q4FVL0|PNP_PSYA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71037640|gb|AAZ17948.1| putative polyribonucleotide nucleotidyltransferase [Psychrobacter
           arcticus 273-4]
          Length = 700

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/699 (49%), Positives = 468/699 (66%), Gaps = 7/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + +ETGRIARQ++ ++L   G   VL   V     K+GQ+FFPLT
Sbjct: 3   MFNTIKREFQYGNQQVVIETGRIARQAN-SILVHMGGVTVLVAAVVKSDAKEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE R +E+E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D   S  + +++ ASAAL +S  PF GPV  A+V +ING+YVLNP L+E  +  LDL V+
Sbjct: 122 DKTQSADIAALIGASAALAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ +A           +     
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHQQQQIVIDNIASMAAEIGTAKQQYTAPVRDQ 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSV 294
            LE  M +     +  +  I +K  R  +++++K   +   + +  S +      E+  +
Sbjct: 242 ALETGMKEQFGAQVSDAYTITDKQARYSKLNEIKDAAIVALAGDAESESYSDTVSELKEI 301

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+V  TL
Sbjct: 302 YNDLKYRTVRDNILSGKPRIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTL 361

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D   +DSL+GT R+ FM+HYNF   + GE  R G P RREIGHGRLARR +  +LP
Sbjct: 362 GNTRDVNMIDSLAGTIRDHFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAMLP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI  PVAGIAMGLVK+G+ F 
Sbjct: 422 DSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERFA 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAG+  GITA+QMD+KI GI+ +IM  AL+QA  GR+HIL+ 
Sbjct: 482 VLSDILGDEDHLGDMDFKVAGSKDGITALQMDIKIEGITPDIMEQALKQAHAGRIHILDA 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+KVL ESR ++    P   ++ I PD+IR+VIG GG  IR + E+TGA ++IDD GT++
Sbjct: 542 MNKVLPESRTEINAHAPNYAVIEINPDKIRDVIGKGGATIRQLTEETGAVIDIDDAGTIR 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   + A  +AA   I +IT   EV K Y+G V +++DFGAFV+     DGLVHISQ++ 
Sbjct: 602 IFGENKAATKAAIAKIEAITAEVEVGKTYEGTVARIVDFGAFVNVLPNTDGLVHISQIAD 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           ERV   SD +KEG  V V + D D+RG+IKL+MK ++Q+
Sbjct: 662 ERVENVSDYLKEGQIVKVLVQDVDNRGRIKLTMKGIEQS 700


>gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 707

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/706 (44%), Positives = 459/706 (65%), Gaps = 14/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+E+E AGR LK+ TG+IARQS GAV+  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKTLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  L++R+IDR IRP+F + +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++ +S AL +S +PF GPV G  V YI+G+++LNP  ++ + SL DL V+
Sbjct: 121 DEQNTPDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSLLDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A +L E+ +L AI+F H+  K +     +  K+C KE I  + ++   
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDT 240

Query: 240 LEE-EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--------- 289
           +    + +   E L+ +     K  R + +D L+++++S F  +                
Sbjct: 241 VISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIEKQYPDVAEEEIPEEPIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
                + D+  K+VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 AFKKYYHDLMKKLVREAILYKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT++DEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA RA+
Sbjct: 361 ATATLGTKDDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+
Sbjct: 421 RYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R 
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHVARQ 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S     L    PR++ + IP D+I  +IG GGK I+GI+E+TG+ ++I D
Sbjct: 541 QILEVMNAAISSP-ADLKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETGSTIDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S  L  +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL+HI
Sbjct: 600 DGKVSIFSKDLEVLENTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD-QNT 694
           S++S ERVA   DV+K GD   VK++  D+ GKI LS K ++ +NT
Sbjct: 660 SEISKERVANVEDVIKMGDVFKVKVISLDN-GKIALSKKKLEMENT 704


>gi|148655103|ref|YP_001275308.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus sp. RS-1]
 gi|187611283|sp|A5URV5|PNP_ROSS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148567213|gb|ABQ89358.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus sp. RS-1]
          Length = 747

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/695 (44%), Positives = 457/695 (65%), Gaps = 8/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+V +E AGR L LE GR A Q++GAV+  YG+T++LAT V  +  +   DFFPLTV+Y
Sbjct: 6   IHSVSMELAGRTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPG + +RE +PT++ IL +R+ DR +RPLF + Y+NE Q+I+     D+ 
Sbjct: 66  EEKMYAAGKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMV 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
           + P  ++++ ASAAL +S +PF GPV   QV YI+G+  +NP   D     LDL V+GT+
Sbjct: 126 NDPAPLAIIGASAALAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           DAVLMVE  A +L ED++L+AII GH  CK + +  ++L ++  +     +     + LE
Sbjct: 186 DAVLMVEAGAKELPEDLMLEAIIQGHQVCKQICDLQNELVRLAGRPKREFVPPPVDTSLE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE----GEIVSVFED 297
           E + Q +   L  +   P K VR  Q + LK++++++F+++            + + FE+
Sbjct: 246 EAIQQWLGNRLYEAITDPNKMVRDAQTEALKQEVIAHFTADEPEEELEARIAAVSTAFEN 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  + VR ++L++  R+DGR  + +R IS +VGL+ R HGS LF RG TQ + + TLG+ 
Sbjct: 306 LLYEEVRRMILERGERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSP 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            +EQ +D L       ++ HYNF P +TGEV R+G+P RR+IGHG LA R++  VLP   
Sbjct: 366 AEEQRLDDLGIETTKRYIHHYNFPPFSTGEVRRLGSPRRRDIGHGALAERSLLAVLPSKE 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIIL 476
           +FPYT+R+VSE   S+GSSSMA+VCGSSLALMDAGVPI  PVAG+AMGL+   D  + +L
Sbjct: 426 EFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKDGRWRVL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDHLG MDFKVAGT  G+T +Q+D+K  GI+  IM  A  QA+ GRL+IL++M+
Sbjct: 486 TDIQGIEDHLGDMDFKVAGTAKGVTGLQLDIKTTGITYEIMREAFAQAREGRLYILDKMN 545

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+SE R +L  + PR+  + I P++I  +IG GGK +RGI E TGA+++I++DG V I+
Sbjct: 546 AVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTVRGITEATGAQIDIEEDGRVYIS 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A  + A  M+ ++T   +V  I+ G+VV++M FGAFV+    +DG+VH+S+L   R
Sbjct: 606 TPDAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSELDVGR 665

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           V    DV+K GD + V ++  +   GK+ LS + +
Sbjct: 666 VENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRAL 700


>gi|27904826|ref|NP_777952.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|38605103|sp|Q89AF8|PNP_BUCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27904224|gb|AAO27057.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 693

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/690 (47%), Positives = 483/690 (70%), Gaps = 2/690 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AVL +  +T V  TVV  + L+  Q FFP+T
Sbjct: 1   MLNPIVRKFQYGQHIVTLETGIMARQATAAVLTSMDDTTVFVTVVGQKKLQTEQKFFPMT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPGG+ RRE RP+ENEILI+R+IDR IRPLF K + NE Q+I  V+  
Sbjct: 61  VNYQERTYAAGRIPGGFFRREGRPSENEILIARLIDRPIRPLFPKRFFNEVQIIATVVSL 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P +V+++ ASAAL +SG+PF GP+  A++ YIN QY+LNP ++E    SLDL +S
Sbjct: 121 NPQVNPDIVAIIGASAALSISGMPFLGPIGAARIGYINNQYILNPNVNEIKSSSLDLIIS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+++VLMVE EAN L+E+ +++AI +GH + K VI+ I   AK                
Sbjct: 181 GTEESVLMVEAEANMLTEEQIINAINYGHEQQKIVIKNIEHFAKKVKIPVWEQCLYPVND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+ + ++ ++++  +  I +K +R   +D +K K +    SE+S  +E EI S+  +I
Sbjct: 241 DLEKRIIEISEQEIVKAYNIFDKVIRLDVLDKIKSKAIEIIISEYSGIDEFEITSIISNI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+VR  +L  ++R+DGR+ + +R +  + G+L R HGS+LF RG+TQ++V VTLGT  
Sbjct: 301 ERKIVRNRVLKNRIRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSVTLGTSR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + ++F+ HYNF P A GE+  +G+P RREIGHG+LA+R+I  V+P+   
Sbjct: 361 DAQNLDELLGDKTDNFLFHYNFPPYAVGEIGMVGSPKRREIGHGKLAKRSILAVMPKLDL 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVPIS  +AGIAMGL+K+GDDF++L+D
Sbjct: 421 FPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPISNAIAGIAMGLIKEGDDFVVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFK++G+  GITA+QMD+K+ GI+  IM +AL QAK  R+HILN M K 
Sbjct: 481 ILGDEDHLGDMDFKISGSKKGITALQMDIKVKGITNEIMKLALYQAKNARIHILNIMKKS 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  R  +  F PR+  + I P++I++VIG GG VIR + E+TG  + I+DDGTVKI++ 
Sbjct: 541 LNVPRKDISIFAPRIHTIKINPEKIKDVIGKGGSVIRMLTEETGTTIEIEDDGTVKISAV 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A + I+ IT   EV  +Y G+V +++DFGAFV     ++GLVHISQ++ +RV 
Sbjct: 601 MQEKAKCAIQRIKEITAEVEVGSVYTGKVTRIVDFGAFVSIGIGKEGLVHISQIAHKRVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K SD ++    ++VK+L+ D +G+++LS+K
Sbjct: 661 KVSDHLRLHQEIFVKVLEVDRQGRLRLSIK 690


>gi|190575258|ref|YP_001973103.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
           maltophilia K279a]
 gi|226702693|sp|B2FN86|PNP_STRMK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190013180|emb|CAQ46813.1| putative polyribonucleotide phosphorylase [Stenotrophomonas
           maltophilia K279a]
          Length = 702

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/693 (50%), Positives = 476/693 (68%), Gaps = 4/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L T V  +S ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LISR+IDR IRPLF + YKN+ Q+I  VM  + +
Sbjct: 63  QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLNPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
               + +++ ASAAL L+G PF GP+  A+V Y NG+Y+LNP + E   S L+L V+GT 
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           +AVLMVE EA  LSE+V+L A+ FGH E + VI AI++L      +P   ++      L 
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALI 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQ 299
             + + I   L  +  + +K  R   I  +KK +    +       WN  E+   F +++
Sbjct: 243 SALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVFETLAGRVAAEGWNPAELSKEFGELE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + +R  +LD KVR+DGR  +TVR I+ + G+L RTHGSSLF RG+TQAIV +TLGT  D
Sbjct: 303 YRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+++G  + +F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P    F
Sbjct: 363 GQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLEAF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+ F++LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GI+A+QMD+KI GI+E IM  ALQQAK GRLHIL EM+  L
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHGL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R +L ++ PR+  + I PD+IR VIG GG  I+ I ++TG +++I DDGT+ IAS +
Sbjct: 543 TAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIASVN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ+S++RV K
Sbjct: 603 AIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             DV+KEGD V VK+L+ D +G+I+LSMK V++
Sbjct: 663 VGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEE 695


>gi|197121578|ref|YP_002133529.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. K]
 gi|226702594|sp|B4UHG5|PNP_ANASK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|196171427|gb|ACG72400.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. K]
          Length = 721

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/702 (45%), Positives = 461/702 (65%), Gaps = 12/702 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
                 G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+
Sbjct: 6   KTATVGGKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEK 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            +A G++PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+  
Sbjct: 66  LFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDT 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V+++  ASAAL +S +PF GP+ G +V  + GQ V NP L +  +  LD+ ++ ++DA+
Sbjct: 126 DVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASRDAI 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEE 243
           +MVE  A ++SE V+++A++FG    +P+++A   L      +        K+  +L  +
Sbjct: 186 VMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARRSFDPPKNDVELRAK 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSV 294
           +  +  E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   
Sbjct: 246 VKALTWEKVKEAYGRNEKHDRYGRLSEIKKELLQALKDEAAGDAAKLATIALREKEIKGY 305

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +ED++   +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TL
Sbjct: 306 YEDVKYDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTL 365

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT EDEQ V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P
Sbjct: 366 GTAEDEQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMP 425

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPYT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   
Sbjct: 426 PEDQFPYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA 485

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT +GIT++QMD+KIGG++ +I+  AL QA  GR HIL E
Sbjct: 486 ILSDILGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGE 545

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K LS  R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V 
Sbjct: 546 MAKALSAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVS 605

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS +  ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS 
Sbjct: 606 IASPNQDKVEEAIKMIRGLTQEAEVGRIYLGTVRKIAEFGAFVEIFPGTDGLIHISELSD 665

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +RV   SDV+ EG+ V VK++  D  GKI+LS K    ++ K
Sbjct: 666 KRVKSVSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAK 707


>gi|306820072|ref|ZP_07453720.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551850|gb|EFM39793.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 690

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/692 (44%), Positives = 449/692 (64%), Gaps = 5/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M ++   E++  GR L +ETG++A+ ++GA    YG+TV+L T       K+G DFFPL+
Sbjct: 1   MSNI--FEMQLGGRTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ Y+ GKIPG ++RRE +P+E  IL SR+IDR IRPLF K Y+N+ QV+  V+  
Sbjct: 59  VDFEEKLYSAGKIPGSFIRREGKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D++ +P  ++M+ +S AL +S +PF GP     V  ++GQ+++NP  ++ ++  + L VS
Sbjct: 119 DIDHNPDTIAMIGSSIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSDMYLVVS 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT+DA++MVE  +N++SE+V+L+AI+F H E K + + +  +A    KE       K   
Sbjct: 179 GTKDAIMMVEAGSNEVSEEVMLNAILFAHEEIKKICDFVQSIANEIGKEKDEYYVFKPLE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E  +++   + ++ +    +K  R   ++ +K + + +F       N  ++  V   I
Sbjct: 239 EVEVAVTEFASQKMKDAIKTVDKQERQDNMEKVKDETMEHFEEIFPD-NMKDVDEVIYSI 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR +++  KVR D R  E +R I  + G+L RTHGS++F RG TQ + V TL    
Sbjct: 298 TKREVRNMIVKDKVRPDNRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLS 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D L   +   +M HYNF   + GE      P RREIGHG LA+RAI P+LP   +
Sbjct: 358 EAQTIDGLDEEEERRYMHHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+  S+GS+S A+VCGS+L L+DAGVP+   VAGIAMGL+KD +D +ILSD
Sbjct: 418 FPYTIRVVSEVMSSNGSTSQASVCGSTLCLLDAGVPMKDMVAGIAMGLIKDEEDVVILSD 477

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAGT+ GITA+QMD+KI GI E+I+  AL QA+ GRLHIL EM KV
Sbjct: 478 IQGMEDFLGDMDFKVAGTEKGITAIQMDIKISGIDEDILKRALAQAREGRLHILGEMRKV 537

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R  L  + P +  M I PD+IR VIG GGKVI  I+++TG K++ID+DG V I S+
Sbjct: 538 IDKPRESLSPYAPMIINMMINPDKIREVIGTGGKVINKIIDETGVKIDIDNDGKVSILSN 597

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A+ +I  I   PEV KIY G++ K+M FGAFV     ++GL+HISQ+  +RVA
Sbjct: 598 DQEMCMKAKAIIEGIVAEPEVGKIYSGKITKIMQFGAFVEILPGKEGLLHISQMDKQRVA 657

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  D+ KEGD+V VKL + D +G++ LS KV+
Sbjct: 658 KVEDLFKEGDSVEVKLTEIDSQGRLNLSRKVL 689


>gi|220916341|ref|YP_002491645.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254782701|sp|B8JFZ1|PNP_ANAD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219954195|gb|ACL64579.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 721

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/702 (45%), Positives = 461/702 (65%), Gaps = 12/702 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
                 G+ + LETG++A+Q+ G+V    G+++VL T V     K+G DFFPLTV+YQE+
Sbjct: 6   KTATVGGKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEK 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            +A G++PG + RRE RPTE E L SR++DRS RPLF++ Y NETQVI  V+  D E+  
Sbjct: 66  LFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDT 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V+++  ASAAL +S +PF GP+ G +V  + GQ V NP L +  +  LD+ ++ ++DA+
Sbjct: 126 DVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASRDAI 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEE 243
           +MVE  A ++SE V+++A++FG    +P+++A   L      +        K+  +L  +
Sbjct: 186 VMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARRAFEPPKNDVELRAK 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSV 294
           +  +  E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   
Sbjct: 246 VKALTWEKVKEAYGRNEKHDRYGRLSEIKKELLQALKDEAAGDAAKLATIALREKEIKGY 305

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +ED++   +R ++ D++ R+ GR    +R I+ +VGLL R HGSSLF RG+TQA+V  TL
Sbjct: 306 YEDVKYDYMRKMITDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTL 365

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT EDEQ V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P
Sbjct: 366 GTAEDEQRVEMLTGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMP 425

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPYT+R+VS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   
Sbjct: 426 PEDQFPYTVRVVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA 485

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT +GIT++QMD+KIGG++ +I+  AL QA  GR HIL E
Sbjct: 486 ILSDILGDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGE 545

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K LS  R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V 
Sbjct: 546 MAKALSAPRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVS 605

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS +  ++E A +MIR +T   EV +IY G V K+ +FGAFV      DGL+HIS+LS 
Sbjct: 606 IASPNQDKVEEAIKMIRGLTQEAEVGRIYLGTVRKIAEFGAFVEIFPGTDGLIHISELSD 665

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +RV   SDV+ EG+ V VK++  D  GKI+LS K    ++ K
Sbjct: 666 KRVKSVSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAK 707


>gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK355]
          Length = 733

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYTDHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKIDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 701

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/691 (41%), Positives = 437/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       + G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++G+ V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+D V+M+E  A ++ ED++L+AI+    E K ++E I  + +   K  +    +   + 
Sbjct: 181 TKDRVMMIEAGAKEVPEDIMLEAIMTAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  + +     IP+K  R K++D+LK+++   F  E +      +     +++
Sbjct: 241 IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGE-TEETLLLVDDALYNLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMVAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G++  I+  AL QA+  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAREARLKILDFMQTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   R+ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G++ LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDKLGRLSLSRKE 690


>gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 728

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/701 (40%), Positives = 435/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDVMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALDQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                DVV+ GD V V ++  D +G++  SMK +     KP
Sbjct: 662 TNNVEDVVQIGDEVDVMVIKIDAKGRVDASMKALLPRPPKP 702


>gi|219669688|ref|YP_002460123.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
           hafniense DCB-2]
 gi|254782717|sp|B8FR00|PNP_DESHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219539948|gb|ACL21687.1| Polyribonucleotide nucleotidyltransferase [Desulfitobacterium
           hafniense DCB-2]
          Length = 723

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/700 (44%), Positives = 446/700 (63%), Gaps = 14/700 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +V    I+  GR +  +TG+I +Q+ GA+   YG+TVV A        ++G DFFPLTV 
Sbjct: 4   EVLERSIQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++ER YA GKIPGG+++RE RP+E  IL +R+IDR IRPLF + Y+N+ QV+  VM  D 
Sbjct: 64  FEERLYAAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQ 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           + +  +  + AASAAL +S +PFEGPV    V  I  ++++NP +++ + S + L V+GT
Sbjct: 124 DCASDITGINAASAALTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSVMHLTVAGT 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS-----KLAKMCAKEPIVIDSKD 236
           +DAV+MVE  A ++ E  +L+AI+FGH E + + E I       L +  AK    +  K 
Sbjct: 184 KDAVMMVEAGAQEVPEAQMLEAIMFGHREIQRIAEFIENYRLEALERNLAKPKQEVVMKQ 243

Query: 237 -FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
              ++ + +     + +  +    EK  R + I  +K++ +++F+ ++   +   I  + 
Sbjct: 244 MPEEIVQAVKAFAYDKMDQAVRTEEKKAREEAIRQVKEEALAHFAEQYPE-DLKTIDKIL 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ED   K+VR ++  + +R DGR  + +R IS +VG+L RTHG+ LF RG TQ + V TLG
Sbjct: 303 EDFVHKIVRRLITVEHIRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              DEQ +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA+ PV+P 
Sbjct: 363 AVGDEQILDGLGLEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPN 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSSMA+VCGS+L+LMDAGVP+  PVAGIAMGL+ + +   I
Sbjct: 423 ENDFPYTIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAI 482

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  G+TA+QMD+KI G+S  I+  AL QAK GRL IL++M
Sbjct: 483 LSDIQGMEDHDGDMDFKVAGTSQGVTALQMDIKIKGVSREILERALTQAKEGRLFILDKM 542

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  F PR+   +I PD+IR VIG GGK I+ I+++TG K++I+DDG V I
Sbjct: 543 LSVIEKPRPELSPFAPRIITASIHPDKIREVIGPGGKTIKKIIDETGVKIDIEDDGRVFI 602

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649
           ++      E A ++I+++T   EV +IY G+V ++MDFGAFV           ++GLVHI
Sbjct: 603 SAVDGEAGENALKIIQALTQEVEVGRIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHI 662

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           SQL+  RV K  DVVK GD + VK    D +G++ LS K 
Sbjct: 663 SQLAHGRVEKVEDVVKLGDEILVKATGIDKQGRLNLSRKE 702


>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 701

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/691 (41%), Positives = 438/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++ + V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+D V+M+E  A ++SED++L+AI+    E K ++E I  + +   K  +    +   + 
Sbjct: 181 TKDRVMMIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  + +     IP+K  R K++D+LK+++   F  E +      +      ++
Sbjct: 241 IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGE-TEETLLLVDDALYSLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A+VG+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   R+ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G++ LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDKLGRLSLSRKE 690


>gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK353]
          Length = 733

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/700 (41%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F + ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDVMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|270293225|ref|ZP_06199436.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
 gi|270279204|gb|EFA25050.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
          Length = 775

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      +L+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 280 AEIIAAYNSELQKAVQVEEKLAREAATQAVKDQVTAVYQEKYADHEECDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|296877279|ref|ZP_06901319.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431799|gb|EFH17606.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 785

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 48  KQVFQTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 106

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 107 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 166

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++G+ ++NP  ++ + SL +L V+GT+
Sbjct: 167 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAERSLLELTVAGTK 226

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 227 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDADLQ 286

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 287 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 346

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL  
Sbjct: 347 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAP 406

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 407 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 466

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 467 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 526

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 527 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 586

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 587 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 646

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 647 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 706

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 707 TNRVEDLVAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 747


>gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/697 (48%), Positives = 457/697 (65%), Gaps = 11/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             + +E  GR L LETGR+A+Q+ G+VL TYG++VVL T    R  +   DF PLT+ YQ
Sbjct: 3   KKLSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           ER YAVG+IPG + RRE  RPTENE L  R+IDR +RPLF+  Y+NETQVI  V+  D E
Sbjct: 63  ERFYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           + P +++M+ ASAAL +S +PF GPV G +V  I+G+YVLNP LD+     LDL V+GT 
Sbjct: 123 NDPELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTS 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AV+MVE  A+ L ED V + I F H   +P+I+   +L K   +  + +      + L 
Sbjct: 183 KAVVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKEVGRPKMEVAPPPVDEDLR 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--------HSSWNEGEIVS 293
             +  +   ++       +K  R +   +L++++++   ++               E   
Sbjct: 243 TRVESLAAAEMTEVISTADKKARGEAAHNLQERVLATLEADLVANTPEADLESKLKEAKG 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + +D+Q K++R  ++ +  R+D R  + VR I+++V  L R HGS+LF RG+TQ +V  T
Sbjct: 303 LLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+ +DEQ ++SLSG     FM+HYNF P   GEV  +  PSRR+IGHG LA RAI  VL
Sbjct: 363 LGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAIQAVL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ K V+GIAMGL+K+G++ 
Sbjct: 423 PDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEV 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI GDEDHLG MDFKVAGTD GITA+QMD+K+ G+S  IM  AL QAK  RLHIL 
Sbjct: 483 AILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDARLHILE 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L   R ++ E  P++  + I PD+IR+VIG GGKVIRGI    G K++++DDG V
Sbjct: 543 KMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKIDVEDDGKV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KI + +    +  RE++ S+T   E+ KIY G V K+MDFGAFV      DGLVHIS+L 
Sbjct: 603 KIFAPNGEVADQVRELVLSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTDGLVHISELE 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             RV K +DV+KEGD V VK+LD D RGKI+LS K V
Sbjct: 663 NRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699


>gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 733

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTIFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|298246516|ref|ZP_06970322.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
           DSM 44963]
 gi|297553997|gb|EFH87862.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
           DSM 44963]
          Length = 816

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/692 (43%), Positives = 453/692 (65%), Gaps = 7/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H  E    GR + +ETGR+A QS GAVL  YG+TV+LAT V     ++G DFFPLTV+ 
Sbjct: 2   IHRQEAVIGGRVMSIETGRVAEQSSGAVLVRYGDTVILATAVGSDEPREGIDFFPLTVDV 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG+++RE R TE+ IL SR+ DR +RPLF K Y+N+ Q++I V+  D E
Sbjct: 62  EERMYAAGKIPGGFIKREGRATEHAILASRLTDRPLRPLFPKGYRNDVQIVITVLSVDQE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQ 182
           + P ++ +V ASAAL +S +PF GPV   +V Y++ Q+V+NP      +  LDL ++GT 
Sbjct: 122 NDPDIMGIVGASAALSISDVPFAGPVGAVRVGYVDDQFVINPPASAMSRSKLDLAIAGTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           DA++MVE  A +L ED++L+A+  GH   + +++   KL ++C K      +    ++L+
Sbjct: 182 DAIMMVEAGAKELPEDMMLEALRVGHEALQDLVKMQEKLVQVCGKPKRTFAAPVPDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++++ ++     +    +K  R   +  ++ ++V+   +++      EI+  +E     
Sbjct: 242 GKVAEFVRPRFEAAVNNSDKTARSASLSQVQDELVTELGTQYPD-RLKEIIGFYEKELKA 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR  +LD  +R DGRD++T+R+I+ +VGLL RTHGS+LF RG TQ + V+TLG+  +EQ
Sbjct: 301 YVRNTILDSGIRPDGRDTKTIRNITCEVGLLPRTHGSALFTRGQTQVLSVITLGSPGEEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L       FM HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 361 VLDGLGTNDNKRFMHHYNFPPYSTGESKPLRGPGRREIGHGALAERAVSPVIPTQEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD----FIILS 477
           T+R VS+I  S+GS+SM +VCG++LALM+AGVPI  PVAG+AMGL+    +    + +LS
Sbjct: 421 TIRAVSDILSSNGSTSMGSVCGTTLALMEAGVPIHAPVAGVAMGLITGEGEREGKWAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKVAGT  G+TA+QMD+K+ GI+ ++M  AL+QA  GR+ I+ +M  
Sbjct: 481 DIQGIEDALGDMDFKVAGTADGVTALQMDIKVKGITYDVMAKALEQAHEGRMFIMEKMLD 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R +L  + PR++ + I  D+I  VIG GGK+IR I +++GAK++I+DDGTV IA+
Sbjct: 541 AIDAPREELSIYAPRIQSIKINSDKIGAVIGPGGKMIRKIQDESGAKIDIEDDGTVNIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +S   ++ A + +R++T+  EV +IY G V +++DFG FV     ++GLV  SQL+  +V
Sbjct: 601 TSGEAMQRAMDAVRALTEEVEVGRIYTGTVRRLVDFGCFVEILPGKEGLVRTSQLADYQV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            +  DVV  GD + V +++ D +G++ LS + 
Sbjct: 661 MRPEDVVSLGDEITVMVIEVDGQGRVNLSRRA 692



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 150/410 (36%), Gaps = 52/410 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           R +  E G + R + G+ L T G+T VL+ +    S  + Q    L  N  +R    Y  
Sbjct: 322 RNITCEVGLLPR-THGSALFTRGQTQVLSVITLG-SPGEEQVLDGLGTNDNKRFMHHYNF 379

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G  +    P   EI    + +R++ P+    + +    + + +++  +  +S  +
Sbjct: 380 PPYSTGESKPLRGPGRREIGHGALAERAVSPVIPTQEEFPYTIRAVSDILSSNGSTS--M 437

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-------YVLNP--RLDEDQGSLDLFVS 179
            S+   + ALM +G+P   PV G  +  I G+        VL+    +++  G +D  V+
Sbjct: 438 GSVCGTTLALMEAGVPIHAPVAGVAMGLITGEGEREGKWAVLSDIQGIEDALGDMDFKVA 497

Query: 180 GTQDAVLMVELE--ANQLSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAKEPIVID 233
           GT D V  ++++     ++ DV+  A+   H       + +++AI        +E + I 
Sbjct: 498 GTADGVTALQMDIKVKGITYDVMAKALEQAHEGRMFIMEKMLDAID-----APREELSIY 552

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIV 292
           +     ++     +  + +        K +R      ++ +  +     +  + N     
Sbjct: 553 APRIQSIK-----INSDKIGAVIGPGGKMIR-----KIQDESGAKIDIEDDGTVNIAATS 602

Query: 293 SVFEDIQAKVVRTVMLDKKV-RMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQAI- 349
                     VR +  + +V R+       + D    V +L    G     +  D Q + 
Sbjct: 603 GEAMQRAMDAVRALTEEVEVGRIYTGTVRRLVDFGCFVEILPGKEGLVRTSQLADYQVMR 662

Query: 350 --VVVTLGTREDEQYVDSLSGTQR----NDFMMHYNFLPCAT--GEVSRM 391
              VV+LG       ++ + G  R        +       A    E    
Sbjct: 663 PEDVVSLGDEITVMVIE-VDGQGRVNLSRRAALSGEMPSQAEIESERGGR 711


>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 701

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/691 (41%), Positives = 438/691 (63%), Gaps = 4/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    ++E AGR L  E G+ A  ++GAVLA YG+T VL T       ++G +FFPLTV
Sbjct: 1   MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER Y+VGKIPGG+++RE +P+E  IL +R+IDR IRPLF K + ++  VI  V+  D
Sbjct: 61  DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++ P V++M+ +S AL +S +PFEGP     V Y++ + V+NP   E +   L L VSG
Sbjct: 121 PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSKLHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+D V+M+E  A ++SED++L+AI+    E K ++E I  + +   K  +    +   + 
Sbjct: 181 TKDRVMMIEAGAKEVSEDIMLEAIMRAQEEIKKIVEFIEGIVREVGKPKMEYQKRIVPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +++++ ++  + +     IP+K  R K++D+LK+++   F  E +      +      ++
Sbjct: 241 IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGE-TEETLLLVDDALYSLE 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR ++ ++  R DGR  + +R + A++G+L RTHGS+LF RG TQ + V TLGT+ +
Sbjct: 300 KEIVRKMIAEEGKRPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGE 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q++D L   +   +M HYNF P +TGE   +  P RREIGHG LA RA+ PV+P   +F
Sbjct: 360 MQFLDGLEEEEAKRYMHHYNFPPFSTGESKPVRGPGRREIGHGALAERALEPVIPSEDEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIILSD 478
           PYT+R+VSE+  S+GS+S A+VCGS+LALMDAGVPI  PVAGI++GL+ KD   FI+L+D
Sbjct: 420 PYTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED  G MDFKVAGT  GITA+Q+D+KI G+++ I+  AL QA+  RL IL+ M  V
Sbjct: 480 IQGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R +L  + P++    + P++IR++IG GGK+I  I+ +T  K++I+ DG + +A+ 
Sbjct: 540 IDKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAP 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A  MI  I    EV + + G+V +   +GAFV     ++GLVHISQL   R+ 
Sbjct: 600 DDISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLK 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +VVK GD V VK++  D  G++ LS K 
Sbjct: 660 SVDEVVKVGDLVLVKVIGIDKLGRLSLSRKE 690


>gi|148983970|ref|ZP_01817289.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924117|gb|EDK75229.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 775

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E++     DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 280 AEITAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|325290354|ref|YP_004266535.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965755|gb|ADY56534.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 713

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/709 (45%), Positives = 454/709 (64%), Gaps = 15/709 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
                 ++  GR +  ETGRI RQ+ GA+   YG+TVV A        ++G DFFPLT  
Sbjct: 4   KTFVKSLQVGGRTMSFETGRIGRQAGGAIFLKYGDTVVSAFATASSKPREGIDFFPLTCE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++ER YA GKIPGG+++RE RP+E   L +R+IDR IRPLF + Y+N+ QV+  VM  D 
Sbjct: 64  FEERLYAAGKIPGGFIKREGRPSEKATLTARLIDRPIRPLFPEGYQNDVQVVTMVMSVDQ 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           +    V ++ AASAAL +S +PFEGP+ G  V  ++GQ+V+NP +D+  +  + L V+GT
Sbjct: 124 DCPTDVSAINAASAALTISNIPFEGPIAGVIVGLVDGQFVINPTVDQAARSQMYLTVAGT 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKD 236
           +DA++MVE  AN++SE+ +LDA+IF H E K + E I +  +       AKE   +  K+
Sbjct: 184 KDAIVMVEAGANEISEEQMLDAMIFAHEEIKKIAEFIEQYREEAFAAGLAKEKSQVVRKE 243

Query: 237 FS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS 293
               L +++          +  + EK  R + +D ++++ + YF  ++    E    I +
Sbjct: 244 RPQDLIDQVKAFAYAKFDQAVRVEEKLAREEAVDQVRQETIEYFEPQYGEEPEIMATINN 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + E    ++VR ++  + +R DGR  + +R I+ +V  L RTHGS++F RG TQ + V T
Sbjct: 304 IMESFIHQIVRRLITVEHIRPDGRALDEIRPITVEVAALPRTHGSAVFTRGQTQVMTVAT 363

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ +D L   +   +M HYNF P + GEV  M AP RREIGHG LA RA+ P++
Sbjct: 364 LGAVSDEQIIDGLGLEESKRYMHHYNFPPFSVGEVRPMRAPGRREIGHGNLAERALIPMI 423

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P  A+FPYTLR+VSE+ ES+GSSSMA+VCGS+LALMDAGVPI  PVAGIAMGL+++   +
Sbjct: 424 PGEAEFPYTLRLVSEVLESNGSSSMASVCGSTLALMDAGVPIKAPVAGIAMGLIQEESQY 483

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI G EDH G MDFKVAGT  G+TA+QMD+KI G+S  I+  AL+QAK GR+ IL+
Sbjct: 484 AILSDIQGLEDHDGDMDFKVAGTAKGVTALQMDIKIKGVSREILAQALKQAKEGRMFILD 543

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M  V+ E R +L    PR+    I PD+IR VIG GGK I+ I+E+TG K++I+DDG V
Sbjct: 544 KMLAVIGEPRKELSPHAPRIISFTIHPDKIREVIGPGGKTIKKIIEETGVKIDIEDDGRV 603

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLV 647
            I++      E A  +I+S+T   ++ +IYKG+VV+VMDFGAFV           ++GLV
Sbjct: 604 FISAVDGEAGEKAHSIIQSMTQEVQIGQIYKGKVVRVMDFGAFVEVIPGVLGLQGKEGLV 663

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           HISQL   RVAK  D+V EGD + VK +  D +G++ LS K    + GK
Sbjct: 664 HISQLDVNRVAKVEDIVHEGDEILVKAIGIDKQGRLNLSRKEAIGSQGK 712


>gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
 gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
          Length = 697

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/695 (49%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  V+ T G   VL  +V     K GQDFFPLT
Sbjct: 3   MFNIIRKEFQYGQHTVVLETGRVARQAN-TVVITMGGVQVLVAIVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + + NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAA+ ++G+PF GP+ GA+V  ING+Y+LNP L++  +  LDL V+
Sbjct: 122 DKTMEGDIAAMLGASAAMSIAGVPFAGPIAGARVGLINGEYILNPTLEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   +      
Sbjct: 182 GTEAAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
           +L  ++    +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ELLGKLKDAFEAKISEAYTIAVKQDRYAALDALHVEAVAQFVPENDETGIAAEVDELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM  AL QA  GR+HILNEM++
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEAALNQAYAGRMHILNEMNQ 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  +++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A   AA   I+++T   E   IY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAAAAVAKIQALTAEIEPGTIYVGKVIRIVEFGAFVNILPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  + V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVADVLKEGQEIKVQVADVDNRGRIKLTMKDIEQ 696


>gi|313901029|ref|ZP_07834517.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
 gi|312953987|gb|EFR35667.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
          Length = 736

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/702 (43%), Positives = 444/702 (63%), Gaps = 11/702 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                +++ GR L +ETG +A+Q+ GAVL  Y +TVVL+T    +  K+G DFFPLTV +
Sbjct: 14  KQVFRLDFCGRGLTVETGEVAKQAGGAVLVRYDDTVVLSTATASKQAKEGIDFFPLTVLF 73

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D +
Sbjct: 74  EEKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQD 133

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            +P + +M  AS AL +S +PF GP+ G  V  ++G+Y++NP  ++ ++  ++L V+GT+
Sbjct: 134 CTPEMTAMFGASLALCVSDIPFNGPIAGVMVGRVDGEYIINPTPEQLEKSDINLTVAGTK 193

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
            AV MVE  A ++SE+ +L AI+FGH   K ++    ++A    KE + +        ++
Sbjct: 194 YAVNMVESGAKEVSEEAMLGAIMFGHEHIKQLVAFQEEIAAAVGKEKMEVKLYTVDEDID 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVF 295
            E+    ++ +R +  I +K  R  +ID+L ++ V+ F ++             ++  + 
Sbjct: 254 REVRAQFEQAIRDAVSIEKKLERYGKIDELTEEAVAVFDAKEYENEAAKAKVLKQVKQIC 313

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+A  VR ++++ KVR DGR  + +R + +QV +L R HGS+LF RG+TQ + V TLG
Sbjct: 314 HSIEADEVRRLIIEDKVRPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLG 373

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L+  +   FM HYNF P + GE  RMG+P RREIGHG L  RA+  VLP 
Sbjct: 374 PMNDNQIIDDLTEVETKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALSQVLPS 433

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DF 473
              FPYT+R V+E+TES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D +   +
Sbjct: 434 VEDFPYTIRTVAEVTESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEENGKY 493

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDH G MDFKVAGT  GITA+QMD+K+ GI+  +   AL QAK  R  IL 
Sbjct: 494 TVLTDIQGMEDHFGDMDFKVAGTSKGITALQMDIKVTGITREVFEEALAQAKVARAQILE 553

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGT 592
            M   +SE R  +G + P++E   I P++IR VIG  GK+I  I+E +   K++I+DDG 
Sbjct: 554 NMMAAISEPREDVGTYAPKIEQFYIDPEKIREVIGPNGKMINKIIEASDDVKIDIEDDGH 613

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I     A I  A +MIR I    +V  IY+G+VV++  FGAFV+     DGL+HIS++
Sbjct: 614 VVIYHMDRAAINHAADMIRDIVREAKVGDIYEGKVVRIEKFGAFVNLFPGTDGLLHISKI 673

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           + ERV K  DV+  GDTV VK+ + DDRG++ +S K +    
Sbjct: 674 NHERVNKVEDVLNIGDTVRVKVTEIDDRGRVNVSAKALLPRP 715


>gi|258591357|emb|CBE67656.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [NC10 bacterium 'Dutch
           sediment']
          Length = 695

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/693 (49%), Positives = 469/693 (67%), Gaps = 3/693 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
            VE    G+PL +E GR+ARQ+DGAVL  YG+TVVL TVV  + ++ G DFFPLTV+YQE
Sbjct: 4   RVERIIEGKPLSIEAGRVARQADGAVLVRYGDTVVLVTVVASKQMRQGIDFFPLTVDYQE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA GKIPGG+ +RE +P + E L SR+IDR +RPLF   Y+N+ Q+I  V+  D ++ 
Sbjct: 64  RAYAAGKIPGGFFKREGKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQQND 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
           P V++++ ASAAL ++ +PF GP+   +V  + G+ +LNP   + +   +D+ V+GT+ A
Sbjct: 124 PDVLAVLGASAALTIAPIPFLGPIGAVRVGRVEGKLLLNPTYAQMEGSDIDMVVAGTRSA 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEE 243
           V+M+E  AN++ EDV+ +AI FGH   +P+I+ +S+LA+    E +    S    +L + 
Sbjct: 184 VVMLEAGANEIPEDVMFEAIEFGHKGIQPMIDMVSELAQALRVEKVPFQVSPPDPQLRDR 243

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +S + ++ LR    I EK         L  ++++ FS E     +G +  +FE I+   +
Sbjct: 244 VSALARQGLRALAGIAEKEEHRSHRQQLFDEVMAAFSDE-PDDRKGVVRGLFEAIEHDEL 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L++  R DGR  E VR I+A+VG+L RTHGS+LF RG TQA+V  TLGT EDEQ +
Sbjct: 303 RRMILEEGRRADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQRL 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L G     FM+HYNF P + GEV  M  P RREIGHG LA RA+   LP   +F YTL
Sbjct: 363 DDLEGEGTKRFMLHYNFPPFSVGEVRFMRGPGRREIGHGALAERALLAALPPKEEFSYTL 422

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVS+I ES+GSSSMATVCG+SL+LMDAGVPI   VAG+AMGLV + +   IL+DI G E
Sbjct: 423 RIVSDILESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAAILTDIIGLE 482

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT  GITA+Q+D+K  GI+ ++M  AL QA+R RLHIL++M + L+E R
Sbjct: 483 DHLGDMDFKVAGTRKGITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMDRALTEPR 542

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             +  + PR+  + IP D+IR+VIG GGKVIRGIV  +GAK+++ DDG ++IAS      
Sbjct: 543 SNISVYAPRIITIMIPVDKIRDVIGPGGKVIRGIVADSGAKIDVSDDGRIEIASVDGEAA 602

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A  +I  I +VPEV KIY+G+VVK+MDFGAFV      DGL+HISQ+S +RV +  DV
Sbjct: 603 QKALSIISKIVEVPEVGKIYQGKVVKIMDFGAFVQILPGTDGLLHISQISEQRVKRVEDV 662

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           + EG+ + VK++D D  GKI+LS K V Q   +
Sbjct: 663 LSEGEEIMVKVIDVDKNGKIRLSRKEVSQAEAQ 695


>gi|319946257|ref|ZP_08020497.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319747639|gb|EFV99892.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 783

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 48  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 106

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 107 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 166

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 167 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 226

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 227 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 286

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 287 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 346

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ ++TL  
Sbjct: 347 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAP 406

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 407 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 466

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 467 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 526

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 527 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 586

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 587 VTIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 646

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 647 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 706

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G++  SMK +     KP
Sbjct: 707 TNRVEDLVEIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 747


>gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
 gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
          Length = 713

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/702 (43%), Positives = 445/702 (63%), Gaps = 11/702 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                +++ GR + +ETG IA+Q+DGAV+  YG+TV L+T       K+G DFFPLTV++
Sbjct: 3   KQEFHLDFCGRGITVETGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSF 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF++ ++NE QV+  V+  D +
Sbjct: 63  EEKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           +SP + +M  AS AL +S +PF GP+ G +V  ING+ V NP + + ++  +DL V+GT 
Sbjct: 123 ASPEMAAMFGASLALCISDIPFNGPIAGCKVGRINGELVANPTVAQMEESDIDLTVAGTA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            A+ MVE  A ++SE+ +L A++FGH + K +     ++   C KE   I+     + ++
Sbjct: 183 QALNMVEAGAKEVSEEDMLAALMFGHEQIKKLCAFQEEIVAACGKEKREIELYAVDETID 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS------SEHSSWNEGEIVSVF 295
            E+    +  +R +  I EK  R  +IDDL  +     +       +  +    +   + 
Sbjct: 243 REVRSNFEAQIRAAVSIKEKLERYGKIDDLTDEAAEMIANKEYASEKEQNNAVKQAREIC 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+A  VR ++++ KVR DGR  + +R +++QV LL R HGS+LF RG+TQ +   TLG
Sbjct: 303 RGIEADEVRRLIIEDKVRPDGRQIDEIRPLNSQVDLLPRVHGSALFTRGETQVLSTTTLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L+      FM HYNF P   GE  RMG P RREIGHG L  RA+  VLP 
Sbjct: 363 ALNDNQIIDDLTVVDSKRFMHHYNFPPYCVGETGRMGNPGRREIGHGALGERALAQVLPS 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DF 473
             +FPYT+R V+++ ES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D D   +
Sbjct: 423 VDEFPYTIRTVADVMESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDDDSGKY 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDH G MDFKVAGT +GITA+QMD+K+ GI++NI   AL QA + RL IL+
Sbjct: 483 TVLTDIQGMEDHFGDMDFKVAGTKNGITALQMDIKVTGITKNIFEEALAQAHKARLEILD 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGT 592
            M   +SE R QL  + P++ +M I PD+I++VIG GGK+I  I+ Q    K++IDDDG 
Sbjct: 543 NMLACISEPRTQLSPYAPKIAMMNIDPDKIKDVIGPGGKMINEIIAQCDNVKIDIDDDGK 602

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I  +    IE A++MI  I  V +V  +Y  +VV++  FGAFV+  G  DGL+HIS++
Sbjct: 603 VVIYHNDYDTIEKAKQMISDIVRVAKVGDVYAAKVVRLEKFGAFVNLFGNTDGLLHISKI 662

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           S  RV K  DV+K GD + VK+ + D++G+I +S K +    
Sbjct: 663 SHHRVDKVEDVLKLGDVIDVKVTEIDNKGRINVSAKALLPKP 704


>gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/697 (48%), Positives = 457/697 (65%), Gaps = 11/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             + +E  GR L LETGR+A+Q+ G+VL TYG++VVL T    R  +   DF PLT+ YQ
Sbjct: 3   KKLSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           ER YAVG+IPG + RRE  RPTENE L  R+IDR +RPLF+  Y+NETQVI  V+  D E
Sbjct: 63  ERFYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           + P +++M+ ASAAL +S +PF GPV G +V  I+G+YVLNP LD+     LDL V+GT 
Sbjct: 123 NDPELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTS 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AV+MVE  A+ L ED V + I F H   +P+I+   +L K   +  + +      + L 
Sbjct: 183 KAVVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKDVGRPKMEVAPPPVDEDLR 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--------HSSWNEGEIVS 293
             +  +   ++       +K  R +   +L++++++   ++               E   
Sbjct: 243 TRVESLAAAEMTEVISTADKKARGEAAHNLQERVLATLEADLVANTPEADLESKLKEAKG 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + +D+Q K++R  ++ +  R+D R  + VR I+++V  L R HGS+LF RG+TQ +V  T
Sbjct: 303 LLKDLQKKMMRQRIVKEHQRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+ +DEQ ++SLSG     FM+HYNF P   GEV  +  PSRR+IGHG LA RAI  VL
Sbjct: 363 LGSGDDEQRIESLSGMNFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAIQAVL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ K V+GIAMGL+K+G++ 
Sbjct: 423 PDADSFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEV 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI GDEDHLG MDFKVAGTD GITA+QMD+K+ G+S  IM  AL QAK  RLHIL 
Sbjct: 483 AILSDILGDEDHLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDARLHILE 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M + L   R ++ E  P++  + I PD+IR+VIG GGKVIRGI    G K++++DDG V
Sbjct: 543 KMQQALEAPRREVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVKIDVEDDGKV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           KI + +    +  RE++ S+T   E+ KIY G V K+MDFGAFV      DGLVHIS+L 
Sbjct: 603 KIFAPNGEVADQVRELVLSLTAEAEIGKIYTGTVQKIMDFGAFVQILPGTDGLVHISELE 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             RV K +DV+KEGD V VK+LD D RGKI+LS K V
Sbjct: 663 NRRVEKVTDVLKEGDEVRVKVLDIDGRGKIRLSRKAV 699


>gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
 gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
          Length = 697

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/694 (45%), Positives = 456/694 (65%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +    IE +GR + +ETGRIA+Q++G+V+ T GETVVL T V    +++G DF PLTV Y
Sbjct: 1   MKNYSIEISGRNIHVETGRIAKQANGSVVVTSGETVVLVTAVATDDVREGIDFLPLTVEY 60

Query: 64  QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           QE +YA G+IPG + RR+  RP E E LISR+IDR +RPLF   Y  ETQVI  V+  D 
Sbjct: 61  QEMSYAGGQIPGNFFRRDMGRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDK 120

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT 181
           E+   +++M+ ASAAL +S +PF+GP+ G +V  I+G++V NP +  +++  ++L V+G 
Sbjct: 121 ENEADMLAMLGASAALEISDIPFQGPIAGVKVGRIDGEFVANPTISQQEESDINLIVAGN 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKL 240
           +D ++MVE  +  +SE  ++DAI +GH   +P+++    L K   K    + D    + L
Sbjct: 181 RDGIVMVEGGSRFVSESDMIDAIFYGHQAIQPMLDVQESLKKEVGKPKRSIPDEVADASL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           + ++ ++ +  L+    I +K  R  +  D + ++V     E     + EI   F  ++ 
Sbjct: 241 KTKVEEIGEPLLKEVLCISDKMDRQAKRRDAQNQVVDALLEEFEGQ-KSEIKDFFHSLEK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR+++LD+  R+DGR    VR I   VGLL R HGS+LF RG+TQA+V+ TLGT  D 
Sbjct: 300 KMVRSMILDEGKRIDGRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDR 359

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q ++S+ G +   F++HYNF P + GE  R+  P RREIGHG LARRA+ PVLP    F 
Sbjct: 360 QRIESIFGEELRSFILHYNFPPYSVGEAKRLSGPGRREIGHGALARRALLPVLPSEEDFQ 419

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI   VAG+AMGLV +GD+ ++L+DI 
Sbjct: 420 YCIRVVSEILESNGSSSMASVCGGCLSLMDAGVPIKDLVAGVAMGLVAEGDNVVVLTDIL 479

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDH G MDFKV GT  GITA+QMD+KI  ++  IM  AL+QAK GRLHIL  M + ++
Sbjct: 480 GDEDHYGDMDFKVTGTSEGITALQMDIKIERLTREIMEQALEQAKEGRLHILGCMKETIA 539

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R ++ E+ P +  + I P+++R +IG GGK IR I   +GA++++DD+G V I+S   
Sbjct: 540 QPRNEVSEYAPIITNVKISPEKVRILIGPGGKTIREICNVSGARIDVDDEGVVTISSPDK 599

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +AA +M++ I    E  K+Y+G+VVK+MDFGAFV      DGLVHISQL+ ERV K 
Sbjct: 600 ECSDAAMKMVKEIVQEAEEGKLYQGKVVKIMDFGAFVEIFPGTDGLVHISQLAPERVNKV 659

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +DV+ EGD V VK+L+    G+I+LS K     T
Sbjct: 660 TDVLNEGDEVLVKVLEVGKDGRIRLSRKAALGET 693


>gi|89895255|ref|YP_518742.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
           hafniense Y51]
 gi|122482382|sp|Q24UJ4|PNP_DESHY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89334703|dbj|BAE84298.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 727

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/700 (44%), Positives = 446/700 (63%), Gaps = 14/700 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +V    I+  GR +  +TG+I +Q+ GA+   YG+TVV A        ++G DFFPLTV 
Sbjct: 4   EVLERSIQVGGRTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++ER YA GKIPGG+++RE RP+E  IL +R+IDR IRPLF + Y+N+ QV+  VM  D 
Sbjct: 64  FEERLYAAGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQ 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           + +  +  + AASAAL +S +PFEGPV    V  I  ++++NP +++ + S + L V+GT
Sbjct: 124 DCASDITGINAASAALTISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSVMHLTVAGT 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS-----KLAKMCAKEPIVIDSKD 236
           +DAV+MVE  A ++ E  +L+AI+FGH E + + E I       L +  AK    +  K 
Sbjct: 184 KDAVMMVEAGAQEVPEAQMLEAIMFGHREIQRIAEFIENYRLEALERNLAKPKQEVVMKQ 243

Query: 237 -FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
              ++ + +     + +  +    EK  R + I  +K++ +++F+ ++   +   I  + 
Sbjct: 244 MPEEIVQAVKAFAYDKMDQAVRTEEKKAREEAIRQVKEEALAHFAEQYPE-DSKTIDKIL 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ED   K+VR ++  + +R DGR  + +R IS +VG+L RTHG+ LF RG TQ + V TLG
Sbjct: 303 EDFVHKIVRRLITVEHIRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              DEQ +D L   +   +M HYNF P + GE   M  P RREIGHG LA RA+ PV+P 
Sbjct: 363 AVGDEQILDGLGLEESKRYMHHYNFPPYSVGETRPMRGPGRREIGHGALAERALLPVIPD 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSSMA+VCGS+L+LMDAGVP+  PVAGIAMGL+ + +   I
Sbjct: 423 ENDFPYTIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPVKSPVAGIAMGLISEENHIAI 482

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDH G MDFKVAGT  G+TA+QMD+KI G+S  I+  AL QAK GRL IL++M
Sbjct: 483 LSDIQGMEDHDGDMDFKVAGTSQGVTALQMDIKIKGVSREILERALTQAKEGRLFILDKM 542

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V+ + R +L  F PR+   +I PD+IR VIG GGK I+ I+++TG K++I+DDG V I
Sbjct: 543 LSVIEKPRPELSPFAPRIITASIHPDKIREVIGPGGKTIKKIIDETGVKIDIEDDGRVFI 602

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649
           ++      E A ++I+++T   EV +IY G+V ++MDFGAFV           ++GLVHI
Sbjct: 603 SAVDGEAGENALKIIQALTQEVEVGRIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHI 662

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           SQL+  RV K  DVVK GD + VK    D +G++ LS K 
Sbjct: 663 SQLAHGRVEKVEDVVKLGDDILVKATGIDKQGRLNLSRKE 702


>gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 746

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/712 (45%), Positives = 470/712 (66%), Gaps = 19/712 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E+   GR L +ETGR+A+Q+ GAVL  YG+TVVL+T    R+L++G DFFPLTV Y
Sbjct: 3   ILKKELNIGGRVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVG+IPGG+++RE+RP+EN IL  R+IDRSIRPLF K ++NETQ+I  +M  D +
Sbjct: 63  EERLYAVGRIPGGFIKREARPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVDQD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            +P + +M+  SAAL +S  PF GP+ G  V  ++G+ ++NP   +  +  L L V+GT+
Sbjct: 123 HAPEMAAMIGTSAALTISDAPFNGPIGGVIVGRVDGELIINPNAAQSAKSDLHLVVAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DAV+MVE  AN+++E+V+LDAI +GH+  + +++ I +  +   ++ +     +F+  EE
Sbjct: 183 DAVMMVEAGANEVTEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQLAKPKLEFAAPEE 242

Query: 243 --EMSQMIKEDLRVSCFIP---------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
             E+ + I E +     +          +K  R    D+LK ++V  F+ ++      +I
Sbjct: 243 NQELIEAIGETMEAEIKMAVRKCVEERMDKKTREAFFDELKDRLVLEFAEQYPEQ-VSDI 301

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +F  I+ K+VR +++  ++RMDGR  + VR IS + G+L RTHGS LF RG TQ + V
Sbjct: 302 KDLFRKIEKKLVRQLIVKDRIRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSV 361

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           VTLG   +EQ +D L   +   +M HYNF P +TGE   M +P RREIGHG LA RA+ P
Sbjct: 362 VTLGAISEEQILDGLGTEESKRYMHHYNFPPFSTGETKMMRSPGRREIGHGALAGRALEP 421

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           ++P   +FPYT+R+VSE  ES+GS+SM +VCGS+LALMDAGVPI  PV+G+AMGL+K+ D
Sbjct: 422 MIPGEEEFPYTIRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVSGVAMGLIKEDD 481

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           + ++L+DI G ED LG MDFKVAGT  GI A+QMD+K+ G+++ I+  ALQQA  GR+HI
Sbjct: 482 EIVVLTDIQGLEDALGDMDFKVAGTAKGINALQMDIKVAGVTQEILEKALQQAYTGRMHI 541

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           + +M +V+S  R +L ++ P +    I PD+IR+VIG GGK I+ IVE+TGA ++I+DDG
Sbjct: 542 MGKMMEVISAPRQELSKYAPMIIHTTINPDKIRDVIGPGGKTIKKIVEETGANIDIEDDG 601

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDG 645
            V +A+      + A  +I  +T    + +IY G+VVK+MDFG FV           ++G
Sbjct: 602 RVFVAAVDREAGQKALSIIEKLTQEVVIGQIYLGRVVKIMDFGCFVEIIPGVLGLPGKEG 661

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           LVHISQL+ +RV K  DVV EGD + VK +  D+ G++KLS K      GK 
Sbjct: 662 LVHISQLAHQRVNKVEDVVAEGDMILVKAIGNDNMGRLKLSKKEAMPQEGKE 713


>gi|257468232|ref|ZP_05632328.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062514|ref|ZP_07926999.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688190|gb|EFS25025.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
           ATCC 49185]
          Length = 699

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/701 (44%), Positives = 447/701 (63%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   VE+E AGR L   TG+IARQS GAV+  YGETV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKKVELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RE RP+ N  L +R+IDR IRP+F + + ++  ++  V  +
Sbjct: 61  VDYIEKFYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D +++P  + ++ +S ALMLS LPF GPV G  V Y +G+++LNP  +E +   L+L V+
Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVVGYKDGEFILNPTPEELETSDLELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           G++DAV MVE  A +L E+ +L AI+F H   K +     + AK+  KE I    K+   
Sbjct: 181 GSKDAVNMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKIDFVKKEVLP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            +++ + +   E L+ +     K  R + +D L+++++  F           +      G
Sbjct: 241 LVKDFIDEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENYEGIEEEDIPEEVIG 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E    + D+  K+VR  +L  K R+DGR +  +R + A+VG+L   HGS++F RG+TQA+
Sbjct: 301 EFKGYYHDLMKKLVREAILYHKHRVDGRKTTEIRPLFAEVGVLPIPHGSAMFTRGETQAV 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+EDEQ VD L       F +HYNF P + GE  RMG+P RRE+GHG LA RA+
Sbjct: 361 VVTTLGTKEDEQLVDDLEKEYFKKFYLHYNFPPYSVGETGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P    FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEESFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA   R 
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALKQALDARN 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S     L    PR+  M I  D+I  +IG GGK I+GI+E+TGA ++I D
Sbjct: 541 EILVVMNNAISAP-ADLRPNVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTGATIDISD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S     ++    ++ +     EV +IY G+VV +  FGAF+     ++GL+H+
Sbjct: 600 DGNVSIFSKDEEVLKETITLVNAFVKDVEVGEIYNGRVVNIAKFGAFMEILPGKEGLLHV 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERVA   DV+K GD   VK++   + GKI LS K +
Sbjct: 660 SEISNERVANVEDVLKVGDRFDVKVIST-ENGKISLSKKKI 699


>gi|15895084|ref|NP_348433.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           acetobutylicum ATCC 824]
 gi|81530281|sp|Q97I45|PNP_CLOAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15024781|gb|AAK79773.1|AE007689_11 Polyribonucleotide nucleotidyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|325509222|gb|ADZ20858.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           acetobutylicum EA 2018]
          Length = 703

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/690 (43%), Positives = 443/690 (64%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H +E + AGR LK+E G+    S+ A+  +YG+TVV+  V      ++G DFFPL++ Y+
Sbjct: 3   HFLETDIAGRKLKVECGKTGMLSNCAMFISYGDTVVMVNVNASEKPREGIDFFPLSIEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE RP+E  IL +R IDR +RPLF K Y+N+ QV+  VM  + ++
Sbjct: 63  ERQYSVGKIPGGFVKREGRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++M  AS AL LS +PF  PV    V  I+G++VLNP L+E ++ SLDL V  T +
Sbjct: 123 LPEILAMNGASMALCLSDIPFTTPVATVSVGCIDGKFVLNPTLEEREKSSLDLTVCATNE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            V+M+E  A+++ ED+++ AI FG N C+ ++    K  K   KE +  +      ++E+
Sbjct: 183 RVMMLEAGADEIPEDLMIAAIDFGFNACQDIVAFQEKAMKEFGKEKVTPELYHPKEEIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++++   E ++   +I ++  R  ++ ++K+K+ + F+ ++   +  +I  V   +Q KV
Sbjct: 243 DVTEFAFESIKEIMYITDRDERNLRLREIKEKISNEFAEKYPD-DGADIDEVVYTLQKKV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +  R DGR  + +R IS  V LL RTHGS LF RG TQ + V TLG   D Q 
Sbjct: 302 VRNMLLKEHRRPDGRRFDEIRPISCDVDLLPRTHGSGLFTRGLTQVMTVTTLGPIGDAQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   +M HYNF P +TGEV  +  P+RREIGHG LA +A+ P++P   +FPYT
Sbjct: 362 IDGLGVEESKRYMHHYNFPPYSTGEVKPLRGPNRREIGHGALAEKALVPLIPSEEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LALMDAGVPI +P AGIAMGL+   D     +++DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSEDLSKEAVITDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S+  +  A+  A++ RL IL +M   ++
Sbjct: 482 GLEDFFGDMDFKVAGTEKGITAIQVDTKIHGLSKYCIKTAINDARKARLFILEKMVACIN 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R +L  + PR   + I  D+IR +IG GGK I  I+E+TG K++I +DGTV + SS  
Sbjct: 542 EPRKELSTYAPRAYTINIDTDKIRTLIGTGGKTINKIIEETGVKIDIREDGTVFVLSSDA 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A +MI  +T   +V ++Y G+V K+ +FGAFV     ++GLVHIS+L   +V K 
Sbjct: 602 DSANRALKMIDDLTKDVKVGEVYLGKVTKITNFGAFVEVLPGKEGLVHISKLDINKVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            DVV  GD + VK+ D D++G++ LS K V
Sbjct: 662 EDVVSVGDEILVKVTDIDNQGRVNLSRKDV 691


>gi|126664893|ref|ZP_01735877.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
 gi|126631219|gb|EBA01833.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
          Length = 706

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/694 (49%), Positives = 465/694 (67%), Gaps = 4/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
              T   E  G+ + LETGRIARQ+ GAVL T  +  VL TVV  +  K GQ FFPLTVN
Sbjct: 4   KPVTKTFELGGKTVTLETGRIARQATGAVLVTIDDISVLGTVVGAKEAKPGQGFFPLTVN 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y E+TY+VGKIPGG+ +RE+RPTE E L SR+IDR IRPLF   + NE QV++ VM  + 
Sbjct: 64  YTEKTYSVGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVLTVMSANK 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQGSL-DLFVSG 180
              P + +M+AASAAL +SG+PFEGP+  ++V + N   Y LNP  +E   SL D+ V+G
Sbjct: 124 TQDPDIAAMLAASAALAISGIPFEGPIGASRVGFTNERGYFLNPTHEERSTSLLDMIVAG 183

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T+DAVLMVE +A  L+ED +L A++F H E +  +  I + A    K      ++   ++
Sbjct: 184 TEDAVLMVESQAQSLTEDQMLGAVLFAHQEMQTAVSGIKEFAAEIGKPRWEWQAEAVNAE 243

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDI 298
           L   +     + +  +  I +K  R  ++ ++K   V+  +  E    +  ++   F   
Sbjct: 244 LMGAIKADFADAIAEAYSIRDKMDRYARLGEIKAAAVAKLAGDEEGKHSAEDVKKCFGKT 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  ++D K R+DGRD++TVR I  +VG+L   HGS+LF RG+TQAIV  TLGT  
Sbjct: 304 EKHVVRQQVIDGKPRIDGRDTKTVRPIKIEVGILPGAHGSALFTRGETQAIVTTTLGTSR 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D+L G  ++ F+ HYNF P + GE  RM  P RREIGHGRLA+R +  V+P   +
Sbjct: 364 DMQIIDALEGESKDPFLFHYNFPPYSVGEAGRMMGPGRREIGHGRLAKRGLLAVMPTVEE 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R VSEITES+GSSSMA+VCGSSLALMDAGVPI   VAGIAMGLVK+GD F IL+D
Sbjct: 424 FPYTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKSAVAGIAMGLVKEGDKFAILTD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GITA+QMD+KI GI++ IM +AL+QA   R HIL EM+KV
Sbjct: 484 ILGDEDHLGDMDFKVAGTKEGITALQMDIKINGITDEIMELALEQAYGARQHILGEMNKV 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++ SR +L    P +  + I P++IR+VIG GG  IR I E+TGA +++DDDG VKI + 
Sbjct: 544 IAASRTELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICEETGASIDLDDDGNVKIYAD 603

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           ++   +AA + +  IT   EV  IY+G+V +++DFGAFV+    +DGLVHISQ+S  R+ 
Sbjct: 604 NMEAAQAAVKRVMEITAEIEVGAIYQGRVERIVDFGAFVNILPGKDGLVHISQISDRRIE 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             +D +KEG  V VK+LD D+RG++KLSMK V +
Sbjct: 664 NVTDELKEGQEVLVKVLDVDNRGRVKLSMKEVKE 697


>gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp.
           Fw109-5]
 gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 722

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/703 (46%), Positives = 466/703 (66%), Gaps = 13/703 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
                  + + LETG++A+Q+ G+V    G+++VL TVV     K+G DFFPLTV+YQE+
Sbjct: 6   KTARVGAQEILLETGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEK 65

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            +A G++PG + RRE RPTE E L SR++DRS RPLF++ Y NETQ+I  V+  D E+  
Sbjct: 66  LFAAGRVPGSFFRREGRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDT 125

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V+++  ASAAL LS +PF GP+ G +V  +NGQ+V NP L +  +  LD+ ++ ++DA+
Sbjct: 126 DVLALTGASAALHLSDIPFNGPIAGVRVGRVNGQFVANPTLAQRAEADLDVIMAASRDAI 185

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEE 243
           +MVE  A ++SE V++DA++FG    + +++A   L K    +P       K+   L E+
Sbjct: 186 VMVEGGAKEVSEQVMVDALLFGQAAVRELLDAQDALRKATGDKPRRAFDPPKNDVALREK 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---------SWNEGEIVSV 294
           +  +  E ++ +    EK+ R  ++ ++KK+++     E +         +  E EI   
Sbjct: 246 VKALTWEKVKEAYARNEKHDRYGRLSEIKKELLQALKEEAAGDAQKLAAIALREKEIKGY 305

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +ED++ + +R ++ D++ R+ GR    +R I+++VGLL R HGSSLF RG+TQA+V  TL
Sbjct: 306 YEDVKYEYMRKMITDERRRIGGRGEADIRKITSEVGLLPRVHGSSLFTRGETQALVATTL 365

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT EDEQ V+ L+G     FM+HYNF P + GEV  + +P RREIGHG LA RA+  V+P
Sbjct: 366 GTAEDEQRVEMLTGMVFKRFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRQVMP 425

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+RIVS+I ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+K+G+   
Sbjct: 426 PEDKFPYTVRIVSDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA 485

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT  GIT++QMD+KIGG++  I+  AL QA  GR HIL E
Sbjct: 486 ILSDILGDEDHLGDMDFKVCGTAEGITSIQMDIKIGGVTREILERALAQAADGRKHILGE 545

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K ++  R  +  + PR+  + I P++I+++IG GGK I+ I  +TG  +NI+DDG+V 
Sbjct: 546 MAKAIATPRESISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGTSINIEDDGSVS 605

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS S  ++EAA +MIRS+T   E+ K Y G V K+ +FGAFV      DGL+HIS+LS 
Sbjct: 606 IASPSQDKVEAAIKMIRSLTQEAEIGKTYLGTVRKIAEFGAFVELFPGTDGLIHISELSD 665

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGK 696
           +RV   SDV+ EG+ V VK++  D  GKI+LS K  + +  GK
Sbjct: 666 KRVKSVSDVLSEGEEVLVKVISVDRAGKIRLSRKEALAEAAGK 708


>gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
          Length = 703

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/691 (46%), Positives = 453/691 (65%), Gaps = 5/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGRPL +ETG++A+Q++GAVL  YG+TVVL+T    +  +D  DFFPL VN
Sbjct: 4   EKKVFKTEWAGRPLIIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-VDFFPLMVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP E+  L SR+IDR IRPLF K Y+++ QVI  VM  D 
Sbjct: 63  YEEKLYAAGKIPGGFNKREGRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           ++SP + +M+ +S AL +S +PFEGP+ G  V  ++G+ ++NP + + + S LDL V+G 
Sbjct: 123 DNSPEMAAMIGSSMALAVSDIPFEGPIAGVNVGLVDGELIINPDVQQREVSVLDLQVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
            DAV MVE  A +++ED +L+AI+FGH E K ++E    +              +  + L
Sbjct: 183 FDAVNMVEAGAKEVAEDKMLEAIMFGHAEIKKLVEFQQSIIDEIQPVKSEFVPVEVDADL 242

Query: 241 EEEMSQMIKE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           E ++ Q+ +   L  +    EK  R + I  +K K++  F  E  +     +   F+ + 
Sbjct: 243 ESKVEQLSESFGLSQAIQTQEKLAREENITAIKLKVIEAFEGEDEAVITA-VNKKFDALI 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            + VR ++ ++KVR DGR  + +R + ++VG+L R HGS LF RG TQA+ V TLG   +
Sbjct: 302 KEEVRRLITEEKVRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALGE 361

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L   +   +M HYNF   + GE   + AP RREIGHG L  RA+  V+P   +F
Sbjct: 362 HQIIDGLGVEEEKRYMHHYNFPNFSVGETGPIRAPGRREIGHGALGERALLQVIPDEKEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   +++ ILSDI
Sbjct: 422 PYTIRVVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTKDENYTILSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED LG MDFKVAGT  GITA+QMD+KI G++E+I+  AL+QA+ GRLHI+  M   +
Sbjct: 482 QGMEDALGDMDFKVAGTKEGITAIQMDIKINGLTEDILREALEQARVGRLHIMEHMLSTI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           SE R +L ++ P++EI+ I PD+IR+VIG GGK I  I++ TG K++I+ DGTV I SS 
Sbjct: 542 SEPRAELSQYAPKIEIIHINPDKIRDVIGPGGKKINEIIDATGVKLDIEQDGTVFIGSSD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            + IEAA+++I +I    EV +IY   V ++  FGAFV     +D LVHISQ++ ER+ K
Sbjct: 602 ASMIEAAKKLIENIVREAEVGQIYMATVKRIEKFGAFVEIFPGKDALVHISQIALERINK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             DVVK GD   VK+ + D +G++  S KV+
Sbjct: 662 VEDVVKLGDQFLVKVTEIDKQGRVNASRKVL 692


>gi|15902560|ref|NP_358110.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae R6]
 gi|116515732|ref|YP_816014.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae D39]
 gi|15458089|gb|AAK99320.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           R6]
 gi|116076308|gb|ABJ54028.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           D39]
          Length = 775

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 738

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/705 (42%), Positives = 444/705 (62%), Gaps = 11/705 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  +E+ GR L +ETG +A+Q+ G+ L  Y +TVVL+T    +  K+G DFFPLTV++
Sbjct: 6   KQTFRLEFCGRVLTVETGEVAKQAGGSALVRYNDTVVLSTATASKQAKEGIDFFPLTVSF 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF++ ++NE QV+  V+  D E
Sbjct: 66  EEKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQE 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            +P + +M  AS AL +S +PF GP+ G  V  ++G+YV+NP  ++ ++  + L V+GT+
Sbjct: 126 CTPEMTAMFGASLALCVSDIPFNGPIAGVIVGRVDGEYVINPTPEQLEKSDIHLTVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
            AV MVE  A ++ ED +L AI+FGH   K ++    ++A    KE + +        ++
Sbjct: 186 YAVNMVEAGAKEVDEDAMLGAIMFGHEHIKKLVAFQEEIAAAIGKEKMEVTLYTVDEAID 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVF 295
           +E+ +  + D+R +  I +K  R  +ID+L +  ++ F  +  +          ++  + 
Sbjct: 246 QEVRENFEADIRAAVSIEKKLERYGKIDELTEAALARFEEKEYASESAKAKALKQVKEIC 305

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+A  VR ++++ KVR DGR  + +R + +QV +L R HGS+LF RG+TQ + V TLG
Sbjct: 306 HGIEANEVRRLIIEDKVRPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLG 365

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D ++  +   FM HYNF P + GE  RMG P RREIGHG L  RA+  VLP 
Sbjct: 366 PMNDNQIIDDVTDVEYKRFMHHYNFPPYSVGETGRMGNPGRREIGHGALGERALSQVLPS 425

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DF 473
             +FPYT+R V+E+ ES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D D   +
Sbjct: 426 EEEFPYTIRTVAEVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEDSGKY 485

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDH G MDFKVAGT  GITA+QMD+K+ GI+E++   AL QAK  R  IL 
Sbjct: 486 TVLTDIQGMEDHFGDMDFKVAGTSEGITALQMDIKVAGITEDVFREALSQAKGARAQILE 545

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGT 592
            M   + + R  +G + P++E   I P++IR VIG  GK+I  I+E     K++I+DDG 
Sbjct: 546 NMMTAIDKPREDVGTYAPKIEQFYIDPEKIREVIGPNGKMINKIIEACDEVKIDIEDDGH 605

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I   +   I  A  MIR I  V +V  IY+G+VV++  FGAFV+     DGL+HIS++
Sbjct: 606 VVIYHMNREAITKAANMIRDIVRVAKVGDIYEGKVVRIEKFGAFVNLFPGTDGLLHISKI 665

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             ERV K  D +  GDT+ VK+++ DDRG++ +S K +     K 
Sbjct: 666 CHERVEKVEDKLNIGDTIKVKVMEIDDRGRVNVSAKALLPRPKKE 710


>gi|148992301|ref|ZP_01822024.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP9-BS68]
 gi|149010792|ref|ZP_01832163.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147765273|gb|EDK72202.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147928927|gb|EDK79939.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP9-BS68]
          Length = 775

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK72]
          Length = 733

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/700 (41%), Positives = 436/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NPR ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 733

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G Q+ Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK160]
          Length = 733

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/700 (41%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++    E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYVDHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 733

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 436/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+  +   DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVAVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK115]
 gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK150]
          Length = 733

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/700 (40%), Positives = 435/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHEAVKELIAFQEEIIAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+  +   DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKVDEIRPLDAEVDYLPCVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK330]
          Length = 733

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 436/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 EAINMVESGAKELSEDVMLEALLKGHEAVKELIAFQEEIVATVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+  +   DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 733

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/702 (42%), Positives = 456/702 (64%), Gaps = 8/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M ++ T E    GR L +E GR+A Q++GAV   YG+TVVL T V  +  + G DF PLT
Sbjct: 1   MPEIKTFERTIGGRNLVIENGRMAGQANGAVTVRYGDTVVLVTAVIAKEPRPGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++ +ER YA G+IPGG++RRE RP+E   L +R+ DR +RPL  K ++ E Q+I+ V+  
Sbjct: 61  IDVEERMYAAGRIPGGFIRREGRPSEQATLAARLADRPLRPLLPKSWRREIQIIVTVLTA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+ P V+ ++ AS AL +S +PF+GP+   +V +I+G++V+NP   + + S LD+ V+
Sbjct: 121 DQENDPDVLGVIGASCALGISEMPFDGPLSAVRVGHIDGEFVINPTHSQLENSTLDVVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T+ AV M+E  AN+  ED++ +AI FGH   + +I    ++     K    I++     
Sbjct: 181 STRSAVTMLEAGANEAPEDLMFEAIRFGHQANQEIIAIQDEIIAAVGKAKWTIEAPVVNP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +L +++S +I   L  + +  +K  R + +D +K +++   + +   ++ G+I++ ++  
Sbjct: 241 ELMDKVSSIIDGKLAEAFYQADKARRQENLDKVKAELLEALNED--EYDSGDIMAAWDKK 298

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             ++VR+ +LDKK R+ GR  E +R++SA+VG+L R HGS+LF RG TQ + VVTLG+ +
Sbjct: 299 IRQLVRSTILDKKERVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQ 358

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            EQ +D++S      ++ HYNF P + GE  R+G   RREIGHG LA RA+ PV+P  A+
Sbjct: 359 MEQKLDNISPETSKRYIHHYNFPPYSVGETKRIG-TGRREIGHGALAERALLPVVPSEAE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFII 475
           FPY LR+VSE   S+GS+SMA+ C SSL+LMDAGVPI KPVAGI++GL+ D    D F+ 
Sbjct: 418 FPYALRLVSEAVSSNGSTSMASACASSLSLMDAGVPIKKPVAGISIGLITDDTNPDRFVT 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GI+  ++   L QA+R R  IL  M
Sbjct: 478 LTDIEGLEDNYGDMDFKVAGTRDGITAIQLDMKLKGITFAVIEQTLAQARRAREVILEVM 537

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K +++SR +L  + PR+  + I P +I  VIG GG+VIR I+E+T   ++I+DDGTV I
Sbjct: 538 NKAIAQSRAELSPYAPRMYKLKIDPGKIGAVIGPGGRVIRSIIEETKTTIDIEDDGTVII 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +S     + A  +I  +T   E + IY G+V ++M FGAFV     ++G+VHIS+L+  
Sbjct: 598 GASDGESAKKAIAIIEGMTKDIEPDSIYTGKVSRIMSFGAFVEILPGKEGMVHISELANR 657

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RV K  DV+K GDTV VK+++ D +G+I LS++ +     + 
Sbjct: 658 RVDKVEDVLKIGDTVTVKVIEIDSQGRINLSIRALLPPPTEE 699


>gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
           II '5-way CG']
          Length = 713

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/704 (48%), Positives = 461/704 (65%), Gaps = 8/704 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +   VE    G+ ++LETGR+A+Q+DG+V+     TVV+AT V  +  K G DF PLTV
Sbjct: 1   MNPIFVEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQER YA GKIPGG+ +RE +P+E EIL SR+IDR +RPLF + +  +TQ+I +V+  D
Sbjct: 61  DYQERAYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISID 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
                 V+++VA+SAAL +S +PF  PV   +V  ++G +++NP LDE +  +LDL V+G
Sbjct: 121 RGGISDVMAVVASSAALYVSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSK 239
           T+DA++MVE + N++SE+  L AI   H    P+IEA  KL  M  KE   + +     K
Sbjct: 181 TRDAIMMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAMPIPPK 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQ----IDDLKKKMVSYFSSEHSS--WNEGEIVS 293
           + E +  M    LR +  I  K  R  Q    + D+++K++  FS+        E EI +
Sbjct: 241 VMEMVESMGASRLREALKIAVKQERQDQTAQILGDVREKILQEFSATSPETVVEEREIFN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F +++ +++R ++LD KVR DGR    +R I+ +VG+L RTHGS+LF RG+TQ++ V T
Sbjct: 301 AFHELERRIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G     FM+HYNF P + GE   M  P RREIGHG LA RA+ PVL
Sbjct: 361 LGTSDDEQRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY++R+VS+I ES+GSSSMATVCG SLA+MDAG+PI   VAGIAMGL+K+GD  
Sbjct: 421 PARDSFPYSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRI 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI G EDHLG MDFKV GT++GITA+QMD+KI GI+  +M  ALQ+A+ GRL+I+ 
Sbjct: 481 AILSDILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMREALQKAREGRLYIME 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   L  SR  +  F PR+  + I  D+IR VIG GGKVIRGI E+TGAK+ IDD G +
Sbjct: 541 KMKMALPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +IAS+     + A +MI  I +  +V KIY G+V  V D+GAFV       GL HISQL 
Sbjct: 601 QIASTDEVAAQKAIDMINQIVEEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQLE 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             RV K SDVV EGD + VK L+ D +GKI+LS K      G  
Sbjct: 661 DRRVEKVSDVVSEGDLILVKALEVDRQGKIRLSRKEAIAEVGAD 704


>gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
 gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
          Length = 733

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/693 (41%), Positives = 444/693 (64%), Gaps = 5/693 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + V E ++AGRPLK+ETG+IA+ ++GA    YG+TVV   V      +DG DFFPL
Sbjct: 1   MFENYKVFETDFAGRPLKIETGKIAQLANGACFVRYGDTVVNVAVTASAKPRDGIDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVGKIPG +L+RE RP++  IL SR+IDR IRPLF K  +N+  V+  VM 
Sbjct: 61  SVDFEEKLYAVGKIPGSFLKREGRPSDKAILTSRVIDRPIRPLFPKDMRNDVSVVCTVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D + SP + +MV  SAAL +S +P++GP+ G  V Y++G+YV+NP  ++ + S + + V
Sbjct: 121 VDPDCSPEIAAMVGTSAALSISDIPWKGPISGVSVGYVDGEYVINPTAEQREKSQMAVTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           + T   + M+E  AN++S++V+ + I+ GH   + +IE I  +     K      S +  
Sbjct: 181 ASTDKLIAMIEAGANEVSDEVMYNGIMAGHEANQKIIEFIKGMQAEIGKAKFEYPSNEPD 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            ++   + +   ED++++    +K VR +++  + +K+  +F   +    E +I      
Sbjct: 241 PEMLAAVMEFATEDVKLALDTDDKTVRDERLKPIYEKVHEHFDPIYPEC-EAKIDECMYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q  VVR  +LD++ R+DGR  + +R ++A+VGLL R HGS +F RG TQ I   TLG  
Sbjct: 300 TQKNVVRRWLLDEQKRVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPV 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D+Q +D + G +   +M  YNF   + GE      P RREIGHG LA RA+ PV+P   
Sbjct: 360 SDQQLLDGIDGEEFKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVIPPVE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY  R+VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +G+ ++ + 
Sbjct: 420 EFPYAYRLVSEVVSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGERWMTMV 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  AL++  + R +IL+E + 
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHEGITAIQMDLKIDGLTPEIVKEALEKTHKARDYILDEIIL 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R +L ++ P++  + IP D+IR VIG GGKVI+ I  +   KV++++DG+V I+
Sbjct: 540 KCIPAPRAELSKYAPKMLSITIPVDKIREVIGSGGKVIQKICAECDVKVDVEEDGSVFIS 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            + +     A  ++++I + PEV  IYKG+V ++MDFGAFV     ++GLVHIS+L  +R
Sbjct: 600 GTDIDNCNRALTIVKTIVEDPEVGAIYKGRVTRLMDFGAFVEIAPGKEGLVHISRLDVKR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             K +DVV   D V VK+L+ DD+G++ LS + 
Sbjct: 660 TEKVTDVVNVDDEVLVKVLEIDDKGRLNLSRRD 692


>gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
 gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
          Length = 702

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/703 (42%), Positives = 452/703 (64%), Gaps = 8/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAGR L +E G++A+Q++GA L  Y +TVVL+  V  +  KD  DFFPLT
Sbjct: 1   MTEKQIFTKEWAGRTLTIEVGQLAKQANGATLIRYNDTVVLSAAVASKKAKD-VDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+ Y+VGKIPGG+++RE+RP+E   L +R+IDR IRP+F++ ++NE Q+   VM  
Sbjct: 60  VNYDEKMYSVGKIPGGFIKREARPSEYATLTARLIDRPIRPMFAEGFRNEVQITNTVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D   SP   +M  +S +L +S +PF GP+    V  ++G+Y++NP ++++    + L V+
Sbjct: 120 DQNCSPAFSAMFGSSLSLAISDIPFNGPIASVDVGRVDGEYIINPTVEQEALSDIHLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+DA+ MVE  A ++SE+ +L A++FGH   + ++    ++     KE + I   +  +
Sbjct: 180 GTKDAINMVESGAAEVSEEDMLGALMFGHRAIQELVAFQEEIVAAVGKEKMNIQLLQIDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            LE+E++   +  +  +    EK  R + I+ +K++ ++++   +    E      E+  
Sbjct: 240 DLEKEVNDAYQSKMIAAIQTEEKLAREENIEAVKEEAMAFYEEHYQEHAEAKRINKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++   VR ++   K+R DGR  + +R +++++GLL R HGS LF RG TQA+ V T
Sbjct: 300 IVEDMEKNEVRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSVAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G       P RREIGHG L  RA+  V+
Sbjct: 360 LAPLGEHQIIDGLGVENSKRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALGERALSQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY +R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLVK+G+++
Sbjct: 420 PSEEDFPYMIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ ILN
Sbjct: 480 TVLTDIQGLEDHLGDMDFKVAGTSKGITALQMDIKIEGITEQILEEALIQAKKARMEILN 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++E   +L  F P++E+M I P++I+ VIG GG  I  I+++TG K++ID +G +
Sbjct: 540 ELTSTIAEPHEELSAFAPKIEMMQIKPEKIKVVIGRGGDQINAIIDETGVKIDIDQEGKI 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A I+ A+E+I  +T   EV K+Y G+V ++  FGAFV     +DGL+HIS+++
Sbjct: 600 SIASEDAAMIKRAKEIIEELTKDIEVGKVYSGKVKRIEKFGAFVEIAKGKDGLLHISEIA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            ERVAK  DV+  G+ + VK+++ D +G+I LS KV+ +   K
Sbjct: 660 NERVAKVEDVLALGEVMDVKVIEIDKQGRINLSRKVLLKTEEK 702


>gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum
           'So ce 56']
 gi|187611292|sp|A9F8Z2|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum 'So ce 56']
          Length = 757

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/696 (46%), Positives = 463/696 (66%), Gaps = 9/696 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF      +   GR L LETGR+A+Q+ GAVL TYG+T+VL T V     + G DFFPLT
Sbjct: 1   MF--VRESVMVGGRALTLETGRLAKQAHGAVLVTYGDTMVLVTAVSQDE-RPGLDFFPLT 57

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
             + E+TYA GKIPGG+ +RE+R  E EIL SR++DR +RPLF + +K +TQ+I  V+  
Sbjct: 58  CEFVEKTYAAGKIPGGFFKREARQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSS 117

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++   V+++  ASAAL +S +P+ GPVVG +V  ++G++V  P + + ++  +DL V+
Sbjct: 118 DKQNKADVLALTGASAALHISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDIDLVVA 177

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            ++DA++MVE  A + +E  ++DA++F H   +PVI+ I K+     K      +     
Sbjct: 178 CSRDAIVMVEGGAAEATEAEIIDALMFAHETAQPVIDLIEKMRAAVGKPKREFVAPALPD 237

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSV 294
           +++  ++Q++ EDL+ +  + +K  R      LKKK+    S+E  +      +G + + 
Sbjct: 238 EIKRRVAQIVDEDLKAATKVTDKKARYDGYSSLKKKLTETLSAELGAEKLLPLQGLVKAE 297

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           FE+ +A VVRT + ++  R+DGRD  ++R I  +VGLL R HGS+LF RG+TQAIV  TL
Sbjct: 298 FEERKAHVVRTYVTEEGRRIDGRDGRSIRPIMCEVGLLPRVHGSALFQRGETQAIVTTTL 357

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  DEQ +D L G     F +HYNF P +TGE   +  P RREIGHG LA RA+  ++P
Sbjct: 358 GTSTDEQKIDGLMGETWKRFYLHYNFPPFSTGETKPLRGPGRREIGHGALAERALSRMIP 417

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              QFPYT+RIVSE  ES+GSSSMA VCG  L+LMDAGVPI  PVAGIAMGL+ +G+ + 
Sbjct: 418 APDQFPYTIRIVSETLESNGSSSMAAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGNKYA 477

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  G+TA+QMD+KI G+S  I+  AL QA+ GRLHIL +
Sbjct: 478 VLSDILGDEDHLGDMDFKVCGTARGVTAIQMDIKIAGLSRQILAQALDQAREGRLHILGK 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + L  +R +L ++ PR+  + + PDQIR +IG GGK I+GIV+QTG  ++++DDGTV 
Sbjct: 538 MLETLPTTRPELSQYAPRITTVRVKPDQIRLIIGPGGKTIKGIVDQTGVAIDVEDDGTVN 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +AS+    ++ A ++I+ +T  PEV   YKG V ++ DFGAFV      DGL+HIS+++ 
Sbjct: 598 VASADSDAVKRALDIIKGLTAEPEVGATYKGTVKRITDFGAFVEILPNTDGLLHISEMAH 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            RV +  DVVKEGD++ VK+L  D  GKI+LS + +
Sbjct: 658 TRVERVEDVVKEGDSLDVKVLSVDREGKIRLSRREL 693


>gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 705

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/697 (47%), Positives = 454/697 (65%), Gaps = 4/697 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
            VE     R L +ETGR+ARQ+DGAVL  YGET+VL T V     K   DF PLTV+Y+E
Sbjct: 5   KVEKLIGNRALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTVDYRE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA GK PGG+ +RE RP++ EIL  R+IDR IRPLF   Y  E QV+  V+  D E+ 
Sbjct: 65  KTYAAGKFPGGFFKREGRPSQKEILTMRLIDRPIRPLFPDTYFREVQVMSIVLSADKEND 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
           P +++MV ASAAL +S +PF  P    +V  I  ++++NP   E  Q S+D+ +SGT+DA
Sbjct: 125 PDILAMVGASAALSISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQSSMDIVISGTEDA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEE 243
           V+MVE  A ++ E+ ++DAI+FGH   K +I    +L + C KE  IV  S+   +L EE
Sbjct: 185 VMMVEASAKEIPEEQMVDAIMFGHAAIKEIITLQHELIEKCGKEKQIVAPSRMNKELMEE 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAK 301
           + Q     +      P K  R + +D++   +++ +  E    +    EI ++FE ++  
Sbjct: 245 IKQKYYTAIVEKNLTPGKGYRKEALDEILAAIINEYCVEGVEDAPTPKEIKAIFETVETI 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  ++ K +R D R  + +R I+ +VG+L R HGS+LF RG+TQAIVVVTLGT  DEQ
Sbjct: 305 VVREQIVSKGLRPDSRGLKDIRPITCEVGILPRVHGSALFTRGETQAIVVVTLGTTSDEQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            VD L       FM+ YNF P   GE   +  P RREIGHG LA RA+  VLP   +FPY
Sbjct: 365 KVDGLEDEYSKKFMLDYNFPPFCVGETKPLRGPGRREIGHGALAERALAEVLPPPNKFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T R+VS+ITES+GSSSMA+VCG +LALMDAGVPI  PVAGIAMGLVK+ +   ILSDI G
Sbjct: 425 TTRVVSDITESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEENSVCILSDILG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM  AL QA+ GRLHIL E+ KV+ +
Sbjct: 485 TEDHLGDMDFKVAGTAQGVTALQMDIKIAGITEKIMRDALAQAREGRLHILQELEKVIEK 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++  + P++  + I P++I  +IG GGK I+ I E+TGAK+ I+DDGTV I+++   
Sbjct: 545 PREKISVYAPKIVQIKINPEKIGMIIGPGGKNIKKIQEETGAKIEIEDDGTVIISATLGE 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A+  I ++T   EV K YKG+V+ + ++GAFV      DGLVHIS+LS E V K  
Sbjct: 605 SAEKAKTWIENMTKEVEVGKTYKGKVLSIKEYGAFVEIIPGHDGLVHISELSYEYVEKAG 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           DVV+ G  + +K++  DD+ ++KLS K   + + +P+
Sbjct: 665 DVVEVGQEIMIKVIGIDDQKRVKLSRKAALKESEQPL 701


>gi|326570032|gb|EGE20078.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC7]
          Length = 696

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/697 (49%), Positives = 466/697 (66%), Gaps = 6/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++ +VL   G   VL  VV       GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQAN-SVLVHMGGVSVLVAVVVRPEAIAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+         +      
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
           +L  ++ +     +  +  I  K  R  ++D+L  + +     E     +    +I  +F
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLG
Sbjct: 300 ETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP 
Sbjct: 360 TTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 420 AERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I
Sbjct: 540 NEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S E
Sbjct: 600 FGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           RV   SD +KEG TV V++ D D+RG+IKL+MK V+Q
Sbjct: 660 RVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVEQ 696


>gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7]
 gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7]
          Length = 714

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/698 (43%), Positives = 450/698 (64%), Gaps = 10/698 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     +++ G+ L +E G +A+Q++GAVL  Y +TV+L+TVV  +  K   DFFPLTV
Sbjct: 1   MNKQVFSMDFYGKNLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPK-NVDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+ Y+VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE Q +  V+  D
Sbjct: 60  TYEEKLYSVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +++P + +M+ AS AL +S +PF GP+ G  V  ++G++++N   ++ + SL +L V+G
Sbjct: 120 QDATPEMAAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLINLEVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSK 239
           T+DA+ MVE +A ++SE+V+L+A++FGH + K +I    K+ + C KE I I   +  + 
Sbjct: 180 TKDAINMVEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKIEIPLFELNND 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVS 293
           L EE++   K ++  +  IP K  R   IDDL  ++   + +      E       ++  
Sbjct: 240 LVEEVAVRAKAEMAAAVSIPGKLERYGAIDDLIAQVTEEYDNREYENEEIKADVMKQVGI 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++   VR ++ + K+R DGR  + +R + +Q+ LL R HGS+LF RG+TQ + V T
Sbjct: 300 ILHDLEKDEVRRLITEDKIRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   + Q +D L    +  FM HYNF P + GE  RMGAP RREIGHG L  RA+  V+
Sbjct: 360 LGAIGEHQKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSS A++C S++ALM AGVPI  PVAG+AMGLVK GD +
Sbjct: 420 PSEEAFPYTIRVVSEVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDAY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGTD+GI A+QMD+KI GI++ I+  AL QAK  R  I+ 
Sbjct: 480 TILTDIQGMEDHLGDMDFKVAGTDAGICALQMDIKIDGITKEILQEALAQAKVARKQIMA 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGT 592
            M   ++  R +L  + P+V++M I PDQI+ VIG GGK I  I+EQ+ G K++I+ DGT
Sbjct: 540 NMMDAIAAPRDELSPYAPKVQMMKIEPDQIKAVIGQGGKTINEIIEQSDGVKIDIEQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I     A I  A E+I  I    +V ++Y G+VV+V D  AF++     DG +HIS  
Sbjct: 600 VVIYHYDQAAINKAVELIEKIVKKAQVGEVYDGKVVRVEDNYAFINLFDGTDGFLHISDY 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + ER  K  +V+K GD + VK+   DD+GK+ +S K +
Sbjct: 660 AYERTKKMGEVIKLGDIIKVKVTKVDDKGKVNVSRKAL 697


>gi|307292085|ref|ZP_07571952.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0411]
 gi|306496867|gb|EFM66417.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0411]
          Length = 704

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/704 (42%), Positives = 454/704 (64%), Gaps = 8/704 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    +  W GRPL++E G++A+Q++GAVL  YG+TVVL+            DFFPLT
Sbjct: 1   MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLS-AAVASKAAKDVDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ YAVGKIPGG+++RE RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  
Sbjct: 60  VNYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + + +P + +M  +S AL +S +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+
Sbjct: 120 EQDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT++A+ MVE  A ++SE+ +L A++FG +  K ++    ++     K  + +D  +  +
Sbjct: 180 GTKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            L++E+       ++ +    EK  R  +ID +K  +   ++ + +   E      E+  
Sbjct: 240 DLKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQ 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++  VVR ++   K+R DGR  + +R +S++V +L R HGS LF RG TQA+ V T
Sbjct: 300 IAEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  RA+  ++
Sbjct: 360 LAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQII 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++
Sbjct: 420 PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL 
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++ID DG V
Sbjct: 540 ELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS    I+ A ++I  +T   EV ++Y  +VV++  FGAFV+    +DGL+HISQL+
Sbjct: 600 SIASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            ERV    DVVK GD V VK+ + D +G++ +S K +     K 
Sbjct: 660 NERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKE 703


>gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 685

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/665 (48%), Positives = 460/665 (69%), Gaps = 2/665 (0%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +A+  +T V  TVV  + +K+GQDFFPLTV+YQERTYA G+IPGG+ +RE RP+E E LI
Sbjct: 1   MASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLI 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           +R+IDR +RPLF + + NE QVI  V+  + + SP +V+M+ ASAAL LSG+PF GP+  
Sbjct: 61  ARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGA 120

Query: 152 AQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
           A+V +IN Q+VLNP   E +   LDL V+GT  AVLMVE EA+ LSE+ +L A++FGH +
Sbjct: 121 ARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVLMVESEADILSEEQMLSAVVFGHQQ 180

Query: 211 CKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
            + VIE I +  K   K      + + +  L  ++  + +  +  +  I EK  R +QID
Sbjct: 181 QQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVKALAEARIGDAYRITEKQARYEQID 240

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            +K  +++  +++  + +EG I+ +   +++ +VR  ++  + R+DGR  +TVR +    
Sbjct: 241 AIKADVIAQLTAQDETVSEGAIIDIITALESSIVRGRIIAGEPRIDGRTVDTVRALDICT 300

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
           G+L RTHGS++F RG+TQA+ V TLGT  D Q +D L+G + + F+ HYNF P + GE  
Sbjct: 301 GVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETG 360

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHGRLA+R +  V+P   +FPY +R+VSEITES+GSSSMA+VCG+SLALM
Sbjct: 361 RIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM 420

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           DAGVPI   VAGIAMGLVK+ + F++LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI
Sbjct: 421 DAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKI 480

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI+  IM +AL QAK  R+HIL+ M + +   R  + +F PR+  M I P +I++VIG 
Sbjct: 481 EGITPEIMQIALNQAKGARMHILSVMEQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGK 540

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           GG VIR + E+TG  ++IDDDGTVKIA++     +A    I  I    EVN IYKG+V +
Sbjct: 541 GGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKAVMARIEDIVAEVEVNAIYKGKVTR 600

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V+DFGAFV   G ++GLVHISQ++ ERV + +D +  G  V VK+++ D + +I+L+MK 
Sbjct: 601 VVDFGAFVSILGGKEGLVHISQITNERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMKD 660

Query: 690 VDQNT 694
           ++ +T
Sbjct: 661 LNNDT 665



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 28/226 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ + T GET  LA                  +  D F    +Y 
Sbjct: 294 RALDICTGVLPR-THGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLF--HYN 350

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDL 122
              Y+VG+       R   P   EI   R+  R +  +    + +    +V+  + + + 
Sbjct: 351 FPPYSVGETG-----RIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNG 405

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ---YVLNPRLDEDQ--GSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +  +    VL+  L ++   G +D  
Sbjct: 406 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDHLGDMDFK 463

Query: 178 VSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           V+GT++ V  ++++     ++ +++  A+         ++  + + 
Sbjct: 464 VAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 509


>gi|94969022|ref|YP_591070.1| polynucleotide phosphorylase/polyadenylase [Candidatus Koribacter
           versatilis Ellin345]
 gi|123381514|sp|Q1IQ54|PNP_ACIBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94551072|gb|ABF40996.1| 3' exoribonuclease [Candidatus Koribacter versatilis Ellin345]
          Length = 815

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/695 (45%), Positives = 450/695 (64%), Gaps = 7/695 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
            V TVE    G+ L  ETG++A+Q+ G+ +   G++VVLAT   +   ++G DFFPLTV+
Sbjct: 6   KVATVEFT-GGKSLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E TYA G+ PGG+++RE RP+E EIL SR IDR IRPLF + ++ ETQVI  V+  D 
Sbjct: 65  YREYTYAGGRFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADS 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           E+ P V  +  ASAAL +S +PF GP+   +V  I GQ ++NP  DE + S L++ V GT
Sbjct: 125 ENDPDVCGINGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
            + ++M+E  A++ +E+ V+ AI FGH E K +   ISKLAK   K    +   +  +  
Sbjct: 185 AEGIVMIESGAHEATEEEVVSAIEFGHGEIKKICAVISKLAKEVGKTKRTVAPVELDQPY 244

Query: 242 -EEMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + + + I  DL  +    +  K     ++ ++K K+     ++  +  +  +   +E +
Sbjct: 245 LDGLRKKIGADLADALNTEKYPKSESYAKVKEIKSKLKEEIPADDDAALKK-LGKYYELL 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  + R  +  +K R DGR  + +R I  +V +L RTHGS++F RG+TQA+V  TLGT +
Sbjct: 304 REDIFRQQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGD 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q ++   G  +  FM+HYNF P + GEV+ +    RREIGHG LA RA+  VLP   +
Sbjct: 364 DMQRMEGFEGEAKKRFMLHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSEDK 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           +PY +R+VS+I ES+GSSSMA++CG SL+LMDAGVP+  PVAGIAMGLVK+GDD+ IL+D
Sbjct: 424 WPYAMRVVSDILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAILTD 483

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+G EDH G MDFKVAGT  GITA+QMD+KIGGI+  IM  AL+QA+RGRL IL++M++V
Sbjct: 484 IAGAEDHYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRGRLFILDKMNEV 543

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R +L EF PR   + IP D+IR++IG GGKVIRGIVE TG K++++D G V +ASS
Sbjct: 544 IQSPRTELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDSGKVNVASS 603

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A +MI  IT   EV K Y G V ++ DFGAFV      DGL+HIS+++  R+ 
Sbjct: 604 DQEAAKKALKMIGDITATAEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEHRIK 663

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              D + EGD V VK+L  D   +IKLS K V + 
Sbjct: 664 DVKDELHEGDQVLVKVLAVDG-NRIKLSRKAVLKE 697


>gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 704

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/696 (47%), Positives = 463/696 (66%), Gaps = 10/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V IE AGR L +ETGR+A+Q+ G+VL TYG++VVL T    R  K+  DF PLT+ YQ
Sbjct: 3   KKVSIELAGRKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREPKENIDFLPLTIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           ER YAVG+IPG + RRE  RPTENE L  R+IDR +RPLF++ Y++ETQ+I  V+  D E
Sbjct: 63  ERFYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P +++M+ ASAAL +S +PF GP+ G +V  I+GQYVLNP  ++ + S LDL V+G++
Sbjct: 123 NDPDLMAMLGASAALSVSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSRLDLIVAGSE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AV+MVE  A+ LSE+ V + I F H   +P++    +L     K  + +  +   + L 
Sbjct: 183 KAVVMVEGGADSLSEEEVKNGIFFAHESLQPLLAMQKELQAAAGKPKLEVKPRQVDEALR 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + + ++   ++       +K  R +    L++K+++    E +     ++    ++ +  
Sbjct: 243 QRVQELAATEMAQVITTVDKQQRGEASAMLEEKVLAALEGELAEAAGEQLPVKLQEAKGL 302

Query: 302 -------VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
                  ++R  +  +++R+D R  + VR+I+ +VG+L R HGSSLF RG+TQ +V  TL
Sbjct: 303 LKELKKKMIRERITKERIRIDNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSATL 362

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+ EDEQ ++SLSG     FM+HYNF P   GEV  +  PSRR+IGHG LA RA+  VLP
Sbjct: 363 GSGEDEQRIESLSGMSFKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAVQAVLP 422

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+ KPV+GIAMGL+K+GDD  
Sbjct: 423 DAESFPYTIRVVSEVLESNGSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGDDIA 482

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKVAGT+ GITA+QMD+K+ G+S  IM  AL QA+ GRLHIL +
Sbjct: 483 ILSDILGDEDHLGDMDFKVAGTEDGITALQMDIKLEGVSREIMSAALNQAREGRLHILGK 542

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + ++  R  +    P++  + I PD+IR++IG GGKVI+ I  + G K+++ DDG VK
Sbjct: 543 MKEAIAAPRSDVPAHAPKMFSITINPDKIRDLIGPGGKVIKAITTEYGIKMDVSDDGKVK 602

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I + +    E  +E + SIT   EV K+YKG V KVMDFGAFV      DGLVHIS+L  
Sbjct: 603 IFAPTGEIAEKVKEEVLSITAEAEVGKVYKGVVQKVMDFGAFVQILPGTDGLVHISELEH 662

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            RV K +DV+ EGD V VK+L+ D RGKI+LS K +
Sbjct: 663 HRVNKVTDVLNEGDEVMVKVLEIDPRGKIRLSRKAL 698


>gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK678]
 gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1]
 gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK408]
 gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 733

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/700 (40%), Positives = 436/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 EAINMVESGAKELSEDVMLEALLKGHEAVKELIAFQEEIVATVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+  +   DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++I+++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDINEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 722

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/697 (49%), Positives = 476/697 (68%), Gaps = 3/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF       +W    + +ETG IARQ+ GAV+    +TVV+ TVV  +S K GQ FFPLT
Sbjct: 3   MFKKAVKSFQWGTYQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ RRE RP+E E LISR+IDR +RPLF + + NE QV+++V+  
Sbjct: 63  VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSI 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179
           + +    + +++AASAAL +S +PF GPV  A+V Y NGQY+LNP   ++    LDL V+
Sbjct: 123 NPDVPSDIPALIAASAALAVSSIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GTQ AVLMVE EANQLSE+V+L A+++GH++ +  I AI+ L     K      +    +
Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINDLVCEAGKPEWDWTAAPKDE 242

Query: 240 LE-EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
               +++ + +  LR +  I +K  R  ++ ++ K++++  S E    +   +  +  +I
Sbjct: 243 PFIAKVTALAEAPLREAYQIRQKGARSDKLKEISKEVMAKLSEEG-DVDAVAVSDIMFEI 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +AK+VR+ +L+ + R+DGRD+ TVR I  + G+L RTHGS+LF RG+TQA+VV TLGT  
Sbjct: 302 EAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTAR 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D L G  R+ FM HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP    
Sbjct: 362 DEQIIDVLEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAED 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F Y++R+VSEITES+GSSSMA+VCG  LA+MDAGVP+   VAG+AMGL+ DG+ F +L+D
Sbjct: 422 FAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLTD 481

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT +GITA+QMD+K+ GI++ IM +AL QAK GRLHIL++M + 
Sbjct: 482 ILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R +L    PR+    I PD+IR VIG GG  I+ + ++TG  ++I DDGTV IAS+
Sbjct: 542 MGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAST 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY+G VVK+++FGA V+    +DGL+HIS++S ERV 
Sbjct: 602 SAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERVK 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +  D + EG  V VKLL  D+RG+++LS+K    + G
Sbjct: 662 EVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEG 698


>gi|218782571|ref|YP_002433889.1| polynucleotide phosphorylase/polyadenylase [Desulfatibacillum
           alkenivorans AK-01]
 gi|257096685|sp|B8FCZ0|PNP_DESAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218763955|gb|ACL06421.1| Polyribonucleotide nucleotidyltransferase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 712

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/695 (47%), Positives = 469/695 (67%), Gaps = 5/695 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T+E     +PL+++TG++A+Q+ G+V+ +YGET+ L TVV  + L+ G DF PL+V YQE
Sbjct: 4   TLERNLGDKPLRIQTGKLAKQASGSVVVSYGETITLVTVVGSQELRPGIDFVPLSVEYQE 63

Query: 66  RTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           + YA G+IPG Y RRE  RP+E E L +R+IDR IRPLF K ++ ETQVI  V+  D E+
Sbjct: 64  KVYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFPKTWRYETQVIATVLSMDQEN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQD 183
            P ++SMV ASAAL +S LPF  P+   +V  I+G+ V NP + + +   L++ V+G++D
Sbjct: 124 DPDMLSMVGASAALCISDLPFFTPIACVRVGRIDGELVANPTISQQENCDLNIIVAGSRD 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+MVE     +SE+ +LDAI FG    +P++E   +L +         D  +  + L  
Sbjct: 184 GVVMVEGGGQFISEEEMLDAIYFGQESLEPLLEMQEELMEKAGVPKRSADPVEKDEYLAA 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           +++++   +++ +  I +K  R   I D+KK ++     E+      E+     D    +
Sbjct: 244 KVAELADPEIKKALEINDKLERQDAIRDVKKTVMEGLGEEYED-RGKEVSEFIHDRTRVI 302

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++LD+  R+ GR  + VR I+ +VG+L RTHGS+LF RG+TQ++ ++TLG+  DEQ 
Sbjct: 303 MRAMVLDEGRRIGGRRFDEVRPITCEVGILPRTHGSALFTRGETQSLGILTLGSSGDEQR 362

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           V++L G +   FM+HYNF P +  EV R+  PSRR+IGHG L+ RAI  VLP    F YT
Sbjct: 363 VETLYGDETRPFMLHYNFPPYSVREVKRISGPSRRDIGHGGLSTRAIKEVLPSKEDFDYT 422

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEI ES+GSSSMATVC +SLALMD GVPI+ PV+GIAMGL+ +GD  ++LSDI GD
Sbjct: 423 IRIVSEILESNGSSSMATVCSASLALMDGGVPITNPVSGIAMGLMAEGDKIVVLSDILGD 482

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH+G MDFKVAGT  GIT++QMD+KI  ++  IM  AL QA+ GRLHIL +M   +SES
Sbjct: 483 EDHMGDMDFKVAGTKDGITSVQMDIKISSLTREIMEKALAQARVGRLHILEKMLTTISES 542

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++  + P+V  + I PD+IR++IG GGKVIR I  +TG +V++DD G VK+++ +L E
Sbjct: 543 REEMSPYAPKVFTIQIHPDKIRDIIGPGGKVIRAIQAETGTRVDVDDSGLVKVSAVNLEE 602

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            EAA +MI+ IT VPEV  +Y+G VVK+MDFGAFV      +GL HISQL T+ V K SD
Sbjct: 603 GEAALQMIKDITAVPEVGAVYEGTVVKIMDFGAFVAILPGTEGLCHISQLDTKHVKKVSD 662

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGK 696
           VVKEG+ + VK+L+    GKI+LS K  +++  GK
Sbjct: 663 VVKEGEKIKVKVLELTKDGKIRLSRKALLEEENGK 697


>gi|328957265|ref|YP_004374651.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
           17-4]
 gi|328673589|gb|AEB29635.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
           17-4]
          Length = 717

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/697 (42%), Positives = 451/697 (64%), Gaps = 8/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAGR L++E G++A+Q++GA L  Y +TVVL+  V  +  KD  DFFPLT
Sbjct: 16  MTEKQVFTKEWAGRTLEIEVGQLAKQANGAALIRYNDTVVLSAAVASKKAKD-VDFFPLT 74

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+ Y+VGKIPGG+++RE+RP+E   L +R+IDR IRP+F++ ++NE Q+   VM  
Sbjct: 75  VNYDEKMYSVGKIPGGFIKREARPSEAATLTARLIDRPIRPMFAEGFRNEVQITNTVMSV 134

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D   SP   +M  +S +L +S +PF GP+    V  ++G+Y++NP L+++    + L V+
Sbjct: 135 DQNCSPAFSAMFGSSLSLAISDIPFNGPIASVDVGRVDGEYIINPTLEQEALSDIHLTVA 194

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+DA+ MVE  A ++SE+ +L A++FGH   + ++    ++     KE + I   +  +
Sbjct: 195 GTKDAINMVESGAAEVSEEDMLGALMFGHEAIQELVAFQEEIVAAVGKEKMTIQLLQIDA 254

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVS 293
            LE+E++   +  +  +    EK  R + I+ +K++ ++++  ++   +E      E+  
Sbjct: 255 DLEKEVNDAFQTKMIAAIQTEEKLAREENIEAVKEEAMTFYEEKYQDNDEAKRINKEVKQ 314

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           + ED++   VR ++   K+R DGR  + +R +++++GLL R HGS LF RG TQA+ + T
Sbjct: 315 IVEDMEKNEVRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSIAT 374

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           L    + Q +D L       F+ HYNF   + G       P RREIGHG L  RA+  V+
Sbjct: 375 LAPLGEHQIIDGLGIENSKRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALGERALAQVI 434

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY +R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLVK+G+++
Sbjct: 435 PSEEDFPYMIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENY 494

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI++ I+  AL QAK+ R+ IL+
Sbjct: 495 TVLTDIQGLEDHLGDMDFKVAGTSKGITALQMDIKIEGITQQILEEALTQAKKARMEILD 554

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           E+   ++E   +L  + P++E+M I P++I+ VIG GG  I  I+E+TG K++ID +G +
Sbjct: 555 ELISTIAEPHEELSAYAPKIEMMQIKPEKIKVVIGRGGDQINAIIEETGVKIDIDQEGNI 614

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IAS   A I  A+E+I  +T   EV KIY G+V ++  FGAFV     +DGLVHIS+L+
Sbjct: 615 SIASEDAAMIRRAKEIIEELTKDIEVGKIYSGKVKRIEKFGAFVEIAKGKDGLVHISELA 674

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ERVAK  DV+  G+ + VK+++ D +G+I LS KV+
Sbjct: 675 NERVAKVEDVLTLGEVMDVKVIEIDKQGRINLSRKVL 711


>gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
 gi|169293219|gb|EDS75352.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
          Length = 710

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/702 (43%), Positives = 456/702 (64%), Gaps = 10/702 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                +++ G+ L +E G +A+Q++G+VL  Y +TV+L+TVV  +  KD  DFFPLTV Y
Sbjct: 3   KQVFSMDFYGKNLSVEIGELAKQANGSVLVRYNDTVILSTVVAGKEPKD-VDFFPLTVTY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE Q +  V+  D +
Sbjct: 62  EEKLYSVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M+ AS AL +S +PF GP+ G  V  ++G++++N   ++ + SL +L V+GT+
Sbjct: 122 ASPEMAAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLERSLINLEVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DA+ MVE +A ++SE+V+L+A++FGH + K +I    K+ + C KE + I   +  S L 
Sbjct: 182 DAINMVEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKLEIPLFELDSNLV 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVF 295
           +E++   K+ +  +  IP K  R   ID L +++ + + ++    ++       ++  + 
Sbjct: 242 DEVTSRAKDQMVAAVSIPGKLERYGAIDALIEEVTNEYDNKEYENDDIKANVMKQVGIIL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++   VR ++  +K+R DGR  + +R + +Q+ LL R HGS+LF RG+TQ + V TLG
Sbjct: 302 HDLEKDEVRRLITVEKIRPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L    +  FM HYNF P + GEV RMGAP RREIGHG L  RA+  V+P 
Sbjct: 362 AIGEHQKIDGLGLEDQKRFMHHYNFPPYSVGEVGRMGAPGRREIGHGALGERALAQVIPG 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE+ ES+GSSS A++C SS+ALM AGVPI  PVAG+AMGLVK GDD+ I
Sbjct: 422 EDVFPYTIRVVSEVLESNGSSSQASICASSMALMAAGVPIKAPVAGVAMGLVKKGDDYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGTD GI A+QMD+KI GI++ I+  AL QAK  R  I+  M
Sbjct: 482 LTDIQGMEDHLGDMDFKVAGTDEGICALQMDIKIDGITKEILQEALAQAKVARREIMANM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVK 594
             V++E R +L  + P+V+++ I  DQI++VIG GGK I  I+EQ+ G K++I+ DGTV 
Sbjct: 542 MAVINEPRKELSPYAPKVQMIKIGTDQIKSVIGQGGKTINEIIEQSDGVKIDIEQDGTVI 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +       I  A  +I  I    +V ++Y G+VV+V D  AFV+     D  +HIS  + 
Sbjct: 602 VYHHDQEAINKAIALIEKIVKKAKVGEVYDGKVVRVEDNYAFVNLFEGTDAFLHISDYNH 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           ER+ K SDVVK GD + VK+   DD+GK+ +S K +     K
Sbjct: 662 ERIKKMSDVVKLGDILKVKVTKVDDKGKVNVSRKALLPKPVK 703


>gi|111657667|ref|ZP_01408397.1| hypothetical protein SpneT_02001144 [Streptococcus pneumoniae
           TIGR4]
          Length = 775

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 733

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/700 (40%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ +L      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTILTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F + ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEISLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHEAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|148988952|ref|ZP_01820352.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925449|gb|EDK76526.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP6-BS73]
          Length = 775

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12]
          Length = 743

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/702 (44%), Positives = 453/702 (64%), Gaps = 13/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+EIE AGR LK+ TG+IARQS GA++  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 37  MFDEKTLEIELAGRSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLT 96

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  LI+R+IDR IRP+F + +  +  ++  V   
Sbjct: 97  VDYIEKFYAAGKFPGGFNKRESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSF 156

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++A+S AL +S +PF GPV G  V YI+G++VLNP  ++ + SL DL V+
Sbjct: 157 DEKNTPDYLGIIASSLALSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSLLDLSVA 216

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K +     +  K+C KE I  + ++   
Sbjct: 217 GTKEAVNMVEAGAKELDEETMLKAILFAHENIKKICAFQEEFVKICGKEKITFEKEEVDP 276

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEG 289
            +   + +   E L+ +     K  R + +D L+++++  F ++H               
Sbjct: 277 MISSFIEEHGHERLQQAVLTLGKKNREEAVDSLEEELLEAFVAKHYPEIPEEELPEEPIL 336

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
                + D+   +VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 337 AFKKYYHDLMKTLVREAILYKKHRVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSL 396

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT+EDEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA RA+
Sbjct: 397 ATATLGTKEDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERAL 456

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+
Sbjct: 457 RYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKE 516

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R 
Sbjct: 517 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHVARQ 576

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S     L    PR++ + IP D+I  +IG  GK I+GI+E+TG+ ++I D
Sbjct: 577 QILEVMNAAISSP-ADLKPNVPRIQQIMIPKDKIAILIGPAGKNIKGIIEETGSTIDITD 635

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S     +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL+HI
Sbjct: 636 DGKVSIFSKDADVLEHTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGLLHI 695

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           S++S ERV+   DV+K GD   VK++   + GKI LS K +D
Sbjct: 696 SEISKERVSNVEDVLKIGDVFKVKVISM-ENGKIALSKKKLD 736


>gi|168490522|ref|ZP_02714665.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC0288-04]
 gi|182683523|ref|YP_001835270.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           CGSP14]
 gi|303253917|ref|ZP_07340038.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS455]
 gi|303260083|ref|ZP_07346056.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261267|ref|ZP_07347215.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263932|ref|ZP_07349853.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS397]
 gi|303265923|ref|ZP_07351819.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS457]
 gi|303268305|ref|ZP_07354102.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS458]
 gi|182628857|gb|ACB89805.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           CGSP14]
 gi|183575025|gb|EDT95553.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC0288-04]
 gi|302599093|gb|EFL66118.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS455]
 gi|302637401|gb|EFL67888.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638778|gb|EFL69240.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP-BS293]
 gi|302642143|gb|EFL72493.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS458]
 gi|302644507|gb|EFL74758.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS457]
 gi|302646337|gb|EFL76563.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS397]
          Length = 775

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
 gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
          Length = 707

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/702 (44%), Positives = 453/702 (64%), Gaps = 13/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T+EIE AGR LK+ TG+IARQS GA++  YG+TV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKTLEIELAGRSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RESRP+ +  LI+R+IDR IRP+F + +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKRESRPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D +++P  + ++A+S AL +S +PF GPV G  V YI+G++VLNP  ++ + SL DL V+
Sbjct: 121 DEKNTPDYLGIIASSLALSISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSLLDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE  A +L E+ +L AI+F H   K +     +  K+C KE I  + ++   
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAILFAHENIKKICAFQEEFVKICGKEKITFEKEEVDP 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEG 289
            +   + +   E L+ +     K  R + +D L+++++  F ++H               
Sbjct: 241 MISSFIEEHGHERLQQAVLTLGKKNREEAVDSLEEELLEAFVAKHYPEIPEEELPEEPIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
                + D+   +VR  +L KK R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 AFKKYYHDLMKTLVREAILYKKHRVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT+EDEQ VD+L       F +HYNF P + GE  RMGAP RRE+GHG LA RA+
Sbjct: 361 ATATLGTKEDEQLVDNLEKEYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VS+ITES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+
Sbjct: 421 RYVIPTEEEFPYTIRVVSDITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R 
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHVARQ 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S     L    PR++ + IP D+I  +IG  GK I+GI+E+TG+ ++I D
Sbjct: 541 QILEVMNAAISSP-ADLKPNVPRIQQIMIPKDKIAILIGPAGKNIKGIIEETGSTIDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S     +E    ++ +     E+N++Y+G+VV +  FGAF+     ++GL+HI
Sbjct: 600 DGKVSIFSKDADVLEHTLRLVNNYVKDVELNEVYEGKVVGIQKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           S++S ERV+   DV+K GD   VK++   + GKI LS K +D
Sbjct: 660 SEISKERVSNVEDVLKIGDVFKVKVISM-ENGKIALSKKKLD 700


>gi|149005700|ref|ZP_01829439.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147762640|gb|EDK69600.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP18-BS74]
          Length = 775

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/701 (41%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            AV MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAVNMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|149002268|ref|ZP_01827210.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP14-BS69]
 gi|147759583|gb|EDK66574.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP14-BS69]
          Length = 775

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V++ Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEAYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
 gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
          Length = 718

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/698 (43%), Positives = 450/698 (64%), Gaps = 10/698 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     +++ G+ L +E G +A+Q++GAVL  Y +TV+L+TVV  +  K   DFFPLTV
Sbjct: 1   MNKQVFSMDFYGKNLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPK-NVDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+ Y+VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE Q +  V+  D
Sbjct: 60  TYEEKLYSVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            +++P + +M+ AS AL +S +PF GP+ G  V  ++G++++N   ++ + SL +L V+G
Sbjct: 120 QDATPEMAAMLGASLALCVSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLINLEVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSK 239
           T+DA+ MVE +A ++SE+V+L+A++FGH + K +I    K+ + C KE I I   +  + 
Sbjct: 180 TKDAINMVEADAKEVSEEVMLEALLFGHEKIKELIAFQEKVVEACGKEKIEIPLFELNND 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVS 293
           L EE++   K ++  +  IP K  R   IDDL  ++   + +      E       ++  
Sbjct: 240 LVEEVAVRAKAEMAAAVSIPGKLERYGAIDDLIAQVTEEYDNREYENEEIKADVMKQVGI 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++   VR ++ + K+R DGR  + +R + +Q+ LL R HGS+LF RG+TQ + V T
Sbjct: 300 ILHDLEKDEVRRLITEDKIRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   + Q +D L    +  FM HYNF P + GE  RMGAP RREIGHG L  RA+  V+
Sbjct: 360 LGAIGEHQKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSS A++C S++ALM AGVPI  PVAG+AMGLVK GD +
Sbjct: 420 PSEEAFPYTIRVVSEVLESNGSSSQASICASTMALMAAGVPIKAPVAGVAMGLVKKGDAY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGTD+GI A+QMD+KI GI++ I+  AL QAK  R  I+ 
Sbjct: 480 TILTDIQGMEDHLGDMDFKVAGTDAGICALQMDIKIDGITKEILQEALAQAKVARKQIMA 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGT 592
            M   ++  R +L  + P+V++M I PDQI+ VIG GGK I  I+EQ+ G K++I+ DGT
Sbjct: 540 NMMDAIAAPRDELSPYAPKVQMMKIEPDQIKAVIGQGGKTINEIIEQSDGVKIDIEQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I     A I  A E+I  I    +V ++Y G+VV+V D  AF++     DG +HIS  
Sbjct: 600 VVIYHYDQAAINKAVELIEKIVKKAQVGEVYDGKVVRVEDNYAFINLFDGTDGFLHISDY 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + ER  K  +V+K GD + VK+   DD+GK+ +S K +
Sbjct: 660 AYERTKKMGEVIKLGDIIKVKVTKVDDKGKVNVSRKAL 697


>gi|307244366|ref|ZP_07526479.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492267|gb|EFM64307.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 696

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/694 (43%), Positives = 444/694 (63%), Gaps = 4/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    + E AGR L +E G+IA  ++G  + +YG+T+++  V      +DG DFFPL+
Sbjct: 1   MFEHRIFKTEIAGRTLTVEIGKIAEMTNGNCIISYGDTMLMVNVTKSAQPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ Y+VGKIPGG+L+RE R +E   L SR+IDR IRPLF + ++N+ QV+  V+  
Sbjct: 61  VDFEEKLYSVGKIPGGFLKREGRASEKATLTSRLIDRPIRPLFPEGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ +S AL +S +PF GP     V  I+G++VLNP   + +   L L VS
Sbjct: 121 EQDCTPDIVAMLGSSIALSISDIPFNGPTASVLVGLIDGEFVLNPNQQQREDSDLHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT++A++MVE  AN++ ++VVLD I++ H E K ++E I  +      E   ++    S 
Sbjct: 181 GTKEAIMMVEAGANEVDDNVVLDGILYAHEEIKKIVEFIEGIVAEVGHEKCPVELHVPSQ 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVFE 296
           ++E  +++  +E +R +    EK  R +++D + ++ ++YF  +  ++ E  G+I  V  
Sbjct: 241 EVEAAVNEFAREKMREAVKTVEKMERTEKMDAVSEETMAYFEEKWDNFEEVAGDIEDVLH 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI    VR+++ D  VR D R  + +R I  +VG++ RTHGS++F RG TQ + V TLG 
Sbjct: 301 DIIKDEVRSLIADHSVRPDNRSLDEIRPIWCEVGMIPRTHGSAIFTRGQTQVLNVTTLGA 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P  
Sbjct: 361 LGDVQRLDGLDEEENKRYMHHYNFPAYSVGETRPSRGPGRREIGHGALAERALLPVIPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+VSE+  S+GS+S A+VC S+L+L+DAGVPI   VAGIAMGL+K      +L
Sbjct: 421 EDFPYAIRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHGKVAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI E ++  AL+QA+ GRLHIL EM 
Sbjct: 481 SDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKIAGIDEPVLRQALKQAREGRLHILGEMK 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           KV++E R +L ++ P++  M I PD+IR+VIG GGK+I  I+++TG K++I+  G V I 
Sbjct: 541 KVITEPRPELSQYAPKIVKMLIDPDKIRDVIGPGGKMINKIIDETGVKMDIEQTGEVFIV 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 I  A EM+  I    E  KIYKG V ++  FGAFV     + GL+HISQ+S ER
Sbjct: 601 GVDPEMINRALEMVEEIVAEAEPGKIYKGTVTRIEKFGAFVEILPGKQGLLHISQISKER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +A   DV+  GD + V + + DD+ +I LS+K +
Sbjct: 661 IANVEDVLAIGDQIDVLVTEIDDKDRINLSIKAI 694


>gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis
           SK36]
 gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus
           sanguinis SK36]
          Length = 733

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   K +I    ++     K    ++      +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKGKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|94676543|ref|YP_589052.1| polynucleotide phosphorylase/polyadenylase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|123384109|sp|Q1LSL2|PNP_BAUCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94219693|gb|ABF13852.1| polynucleotide phosphorylase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 697

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/693 (46%), Positives = 470/693 (67%), Gaps = 2/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      ++    + LETG +ARQ+  AV+    +T+VL TVV  + +K GQ FFPL 
Sbjct: 1   MLNPIVHRFQYGKHIVILETGIVARQATAAVMVNMADTIVLVTVVGVKQVKPGQKFFPLM 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+ PGG+ RRE RP+E EILISRMIDR +RPLF   + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRFPGGFFRREGRPSEGEILISRMIDRPLRPLFPDGFLNEVQVIATVVSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + SP +V+M+  SAAL +SG+PF  P   A+V YIN QYVLNP + E    SLDL V+
Sbjct: 121 NPQVSPDIVAMIGVSAALSISGIPFNCPFGAARVGYINNQYVLNPTIAELVDSSLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
            T +AVLMVE EA QLSE+ +L AIIFGH + + VI+ I+ +  +  K      ++   +
Sbjct: 181 STANAVLMVESEAKQLSEEQMLSAIIFGHEQQQLVIQNINHMVTIVGKPKWSWQAQVIDT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L+  ++++ +  L  +  I +K  R   I+ +K  ++S    ++ +  E  I ++F ++
Sbjct: 241 NLQLCVTELAESRLNEAFCISDKQERDVCIETIKSDVLSALQQKNETIEEETISNIFANL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++ R  +L  K+R+DGR+ + +R +  +  +L RTHGS+LF+RG+TQA+V VTLGT  
Sbjct: 301 EKQIARNRILGGKLRIDGRNHKMIRSLDMRTSILPRTHGSALFVRGETQALVTVTLGTER 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D L G + + F++HYNF P   GE+  +G+P RREIGHGRLA+R I  V+P   +
Sbjct: 361 NAQNIDELIGERTDRFLLHYNFPPYCVGEIGLVGSPKRREIGHGRLAKRGILAVMPTANE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAG+AMGL+K+ ++F+ILSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAAVAGVAMGLIKEDNNFVILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I  +ED++G MDFKVAG+ +GITA+QMD+K  GI+ NI+ +AL QAK  R+HILN M +V
Sbjct: 481 ILSNEDYIGDMDFKVAGSKNGITALQMDIKTKGITNNIIQLALNQAKDARMHILNMMEQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR  +  F PR+  + I PD+I++VIG  G VIR + E+T   ++I+DDGTV +A++
Sbjct: 541 ISMSRTDISPFAPRIHTIKIHPDKIKDVIGKCGSVIRALTEETKTIIDIEDDGTVTVAAT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              + + A   I+ IT   EV  IY G+V +++DFGAF+     ++GLVHISQ++ +RV 
Sbjct: 601 DSIKAQQAICRIKDITAEIEVGSIYHGKVTRIVDFGAFIAISSNKEGLVHISQITNKRVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           K +D +     V VK+L+ D +G+I+LSMK  +
Sbjct: 661 KVADYLSIDQIVLVKVLEVDRQGRIRLSMKDTN 693


>gi|303239217|ref|ZP_07325746.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
           cellulolyticus CD2]
 gi|302593262|gb|EFL62981.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
           cellulolyticus CD2]
          Length = 703

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/697 (41%), Positives = 439/697 (62%), Gaps = 7/697 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +  +E AGR L +ETG++A+ S+G+V+  YG+TVVL+        ++G DFFPL+V+Y+E
Sbjct: 4   SFSMELAGRTLVIETGKLAQLSNGSVMVRYGDTVVLSNATASAKPREGIDFFPLSVDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R Y+VGKIPGG+++RE +P+E  IL SR+IDR +RPLF K  +N+  ++  VM  D ++S
Sbjct: 64  RLYSVGKIPGGFIKREGKPSEKAILTSRVIDRPLRPLFPKDLRNDVALVNTVMSVDQDNS 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
           P V +++ AS AL +S +PF GPV G  +  ++G+ V+NP   + + S + + ++ T++ 
Sbjct: 124 PEVAALLGASMALSISDIPFNGPVGGVILGLVDGKVVINPDAKQREKSQMYVTLAATREK 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           ++M+E  AN++ +DV+LDAI  GH E + + + I  + K   K      S +  +++   
Sbjct: 184 IVMIEAGANEVPDDVMLDAIRQGHQEIRKICDFIDSVVKEIGKPKFEYKSAEVPAEIFMA 243

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           + +     +R +    +K VR + I  L +   ++ +       E  I      ++ KVV
Sbjct: 244 VKEFGYARMREAVLAVDKQVRDENIAKLTEDTKAHLAETFPEM-ESIIDEALYKLEKKVV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++ +  R+DGR  + +R +SA VGLL R HGS LF RG TQ + +VTLG   D Q +
Sbjct: 303 REYIMKEGKRVDGRRLDEIRPLSADVGLLPRVHGSGLFQRGQTQVLTIVTLGALGDVQVL 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +   +   +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPYT+
Sbjct: 363 DGIELEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERALEPVIPSQEEFPYTM 422

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD---FIILSDIS 480
           R+VSE+  S+GS+S  +VCGS+LALMDAGVPI KPVAGI+ GLV D D+   F+   DI 
Sbjct: 423 RLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKKPVAGISAGLVVDEDEPGRFVTFMDIQ 482

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVL 539
           G ED  G MDFKVAGT  GITA+Q+D+K+ G++E I+  A +  ++GRL I+++ + K +
Sbjct: 483 GIEDFFGDMDFKVAGTKDGITAIQVDIKVDGLTEEIVEQAFELTRKGRLQIIDDVILKAI 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R ++ ++ P++   AI PD+IR+VIG GGK+I  I+  TG K++I+DDG V I+SS+
Sbjct: 543 PAPRKEMSKYAPKIITTAINPDKIRDVIGPGGKMINKIIADTGVKIDIEDDGKVFISSSN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               + A  MI  I    E  +IY G+V++V  FGAFV F   ++GLVHIS+L  +RV K
Sbjct: 603 SQAAQRALMMIEGIAKDVEPGQIYMGKVMRVTTFGAFVEFLPGKEGLVHISKLDKKRVEK 662

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             DVV  GD + VK+LD D +G+I LS K    ++ +
Sbjct: 663 VEDVVNIGDEILVKVLDVDKQGRINLSRKDAMDDSQE 699


>gi|298502383|ref|YP_003724323.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298237978|gb|ADI69109.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 754

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 20  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 78

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 79  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 138

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 139 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 198

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 199 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 258

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 259 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 318

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 319 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 378

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 379 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 439 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 498

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 499 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 558

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 559 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 618

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 619 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 678

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 679 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 719


>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 700

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/696 (49%), Positives = 469/696 (67%), Gaps = 3/696 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  VE+E AGR ++LETGR+A+ +DGAVLA+YG+T+VLAT V  + LK   DF PLTVNY
Sbjct: 2   VQAVEVEIAGRTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ Y+ GKIPGGY +RE  P+E E L SR+IDR IRPL  K +  ETQVI +V+  D  
Sbjct: 62  LEKAYSAGKIPGGYFKREGAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQS 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            +  VV + AASAAL +S +PF GP+ G ++  +NGQ+V+NP + E Q   L+L V+GT+
Sbjct: 122 MTSEVVGITAASAALAISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSELELVVAGTE 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+ MVE  AN LSE V LDA+   H+E K ++  I +L  M  +   V+  +    +LE
Sbjct: 182 DAIQMVESGANGLSESVFLDALALAHSEIKKIVAKIVELQAMVGRTKRVVPVEPVGEELE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++ +++   +R +  I  K  R ++ D +    V     E  + +  ++  V+ D++  
Sbjct: 242 RQVRELVAGPIREAVLIANKNDRQERFDQIMADAVDKLGEEDPARS-RQVKEVYHDVEYH 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+KKVR DGR +  +R I+ +  +L RTHGS+LF RG+TQ++ VVTLGT +DEQ
Sbjct: 301 EVREMILEKKVRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G    +FM+HYNF P + GE   + +P RRE+GHG+LA RA+  VLP    FPY
Sbjct: 361 RIDALEGEYFRNFMLHYNFPPFSVGEARPLRSPGRREVGHGKLAERALKSVLPDKEAFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVS+I ES+GSSSMATVCG +LA+MDAGVPI KPVAGIAMGL+KDGD  +ILSDI G
Sbjct: 421 TIRIVSDILESNGSSSMATVCGGTLAMMDAGVPIKKPVAGIAMGLIKDGDRVLILSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKV GT  GITA+QMD+KI GI+ ++M  AL+QA+ GR+HIL +M + LS 
Sbjct: 481 LEDHLGDMDFKVTGTQEGITALQMDIKIEGITIDLMRQALEQARAGRIHILEKMQESLSS 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  L    PR+  + I  D+IR+VIG GGKVIRGI+ + G KVN+DD G V IAS   A
Sbjct: 541 PRDSLAPHAPRIYTLQIKTDKIRDVIGPGGKVIRGIIAECGVKVNVDDSGLVTIASVDEA 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +M+  +T+   V KIY G V K++DFGAFV      DGLVHISQL+  RV   +
Sbjct: 601 SAQQAIDMVNRLTEEAIVGKIYMGTVRKIVDFGAFVEILPNVDGLVHISQLAEHRVQSVA 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           D + EG+ V VK+L+ D +GKI+LS K     + +P
Sbjct: 661 DELAEGEQVLVKVLEIDRQGKIRLSRKEALLESEQP 696


>gi|306825739|ref|ZP_07459078.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432100|gb|EFM35077.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 754

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 436/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 20  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 78

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 79  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 138

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 139 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 198

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 199 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 258

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E E     +  + E
Sbjct: 259 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFERIMRDVAEILE 318

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL  
Sbjct: 319 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAP 378

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 379 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 439 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 498

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 499 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 558

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 559 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 618

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 619 SSDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 678

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 679 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 719


>gi|301799640|emb|CBW32198.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           OXC141]
          Length = 737

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E++     DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEITAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|163847604|ref|YP_001635648.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525460|ref|YP_002569931.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus sp.
           Y-400-fl]
 gi|187610252|sp|A9WEJ7|PNP_CHLAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096674|sp|B9LH03|PNP_CHLSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163668893|gb|ABY35259.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449339|gb|ACM53605.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus sp.
           Y-400-fl]
          Length = 755

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/696 (46%), Positives = 456/696 (65%), Gaps = 8/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           ++++V  E AGR L LE GR A Q+DGAV+A YG+T++LATVV  +  ++G DFFPLTV+
Sbjct: 5   NIYSVSAEIAGRTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGKIPG + +RE RPT   ILISR+ DR +RPLF K + NE QVII     D+
Sbjct: 65  YEEKMYAVGKIPGNFFKREGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDM 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E+ P  ++++AASAAL +S +PF GPV   Q+ ++NGQ V+NP+++E     LDL V+GT
Sbjct: 125 ENDPGPLAIIAASAALCISDIPFAGPVGAVQMGHLNGQLVVNPKMNEIADSRLDLVVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +DAVLMVE  A +L+ED +L A+I GH  CK + +   +L ++C K           + L
Sbjct: 185 KDAVLMVEAGAYELTEDEMLQAVIDGHAVCKQICDLQEQLVQLCGKPKRPFTPPVVDTSL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSVFE 296
           EE +S  + + LR +   P K  R  Q + LK +++++F+++           E+   FE
Sbjct: 245 EEAISAWMGDRLRKAVRSPIKQEREAQTEALKAEVIAHFTADEPEEEIANRTKEVTKAFE 304

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +    VR  +LD+ +R+DGR  + +R IS +VG++ R HGS++F RG TQ + + TLG+
Sbjct: 305 KLLKDEVRNAILDEGIRVDGRALDEIRPISIEVGVIPRVHGSAVFTRGQTQVLTITTLGS 364

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ VD L       ++ HYNF P +TGEV R+G P RR+IGHG LA R+++ VLP  
Sbjct: 365 PGDEQKVDDLGIETSKRYIHHYNFPPFSTGEVRRIGTPRRRDIGHGALAERSLYAVLPDE 424

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFII 475
             FPYT+R+VSE+  S+GSSSMA+VCGSSL+LMDAGVPI  PVAG+AMGL+  +   + +
Sbjct: 425 KDFPYTIRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLITGEDGRWRV 484

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  G+T +QMD+K  GI+  IM  A  QA+ GRL IL++M
Sbjct: 485 LTDIQGLEDALGDMDFKVAGTAKGVTGLQMDIKTTGITYEIMREAFAQARAGRLFILDKM 544

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V+S  R +L  + PR+  + IP D+I  +IG GGK IR I E TGA+++I+DDG V I
Sbjct: 545 NEVISAPRPELSIYAPRIMTIQIPVDKIGALIGPGGKTIRNICETTGAQIDIEDDGRVFI 604

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +   A    A  MI  +T   +V  I+ G+VV +  FGAFV+    +DG+VH+S+L  +
Sbjct: 605 TTPDGAAARQAISMIEGLTREAKVGDIFLGKVVSIKPFGAFVNILPGKDGMVHVSELDEK 664

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           RV    DVV  GD + V ++D D   GKI LS + V
Sbjct: 665 RVENVEDVVSLGDEINVMVIDIDRTTGKISLSRRAV 700


>gi|326567242|gb|EGE17362.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           12P80B1]
          Length = 695

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/696 (49%), Positives = 464/696 (66%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++ +VL   G   VL  VV       GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQAN-SVLVHMGGVSVLVAVVVRPEAIAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+                
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFFAPAINE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
           +L  ++ +     +  +  I  K  R  ++D+L  + +     E     +    +I  +F
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLG
Sbjct: 300 ETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP 
Sbjct: 360 TTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 420 AERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I
Sbjct: 540 NEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S E
Sbjct: 600 FGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 660 RVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|148998264|ref|ZP_01825733.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755907|gb|EDK62951.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP11-BS70]
          Length = 775

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  + GR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 41  KQVFQTTFVGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 99

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 100 EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 159

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 160 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 219

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 220 HAINMVESGAKELSEEIMLEALLKGHEAVKELITFQEEIVAAVGKEKAEVELLHVDAELQ 279

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 280 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 339

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 340 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 399

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 400 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 459

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 460 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 519

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 520 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 579

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 580 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 639

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 640 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 699

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 700 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 740


>gi|293364915|ref|ZP_06611632.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
 gi|291316365|gb|EFE56801.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
          Length = 754

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 437/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 20  KQVFQTTFAGRELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATG-DFFPLQVNY 78

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 79  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDN 138

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 139 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 198

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 199 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 258

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 259 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 318

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL  
Sbjct: 319 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAP 378

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 379 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 439 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 498

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 499 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 558

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 559 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 618

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 619 SSDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 678

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 679 TNRVEDLVAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 719


>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
           defluvii]
 gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
           defluvii]
          Length = 705

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 478/694 (68%), Gaps = 3/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H V+IE AGR L LETGRIA+Q+DGA+ ATYG+TVVLAT V  ++ K G DF PLTV+Y
Sbjct: 2   KHVVDIELAGRRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+TYA GKIPGGY +RE RP+E E+L SR+IDR +RPLF + Y  ETQVI +V+  D  
Sbjct: 62  QEKTYAAGKIPGGYFKREGRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIASVLSADKT 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
               V+ ++AASAAL +S +PF GP+ G ++  +NGQ+V+NP L+  +   L L V+GT 
Sbjct: 122 GVSDVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETSDLHLVVAGTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DAV+MVE  AN+L E  +L+AI   H+E K ++  I +L K+  K   +V+     + L 
Sbjct: 182 DAVMMVEAGANELPEATMLEAIELAHSEIKKIVAKIEELRKLVGKVKRVVVQEAIDAALT 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++  ++   +R +  IP K  R +++D +  + V+   S+  + +   +  +F  ++  
Sbjct: 242 EQVRALVAGPIREAILIPNKSARQERLDQVLAETVAKLKSDEPNRD-RHVKIIFHGLEYT 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L+K+VR DGR    +R I+ +VG+L R HGS++F RG+TQ++ VVTLGT +DEQ
Sbjct: 301 EVRNMILEKRVRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D+L G     FM+HYNF P + GE   + +P RRE+GHG LA RA+  ++P   +FPY
Sbjct: 361 RIDALEGEYMRTFMLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVSEI ES+GSSSMATVCG +LAL+DAGVPI +PVAGIAMGL+K+GD  ++LSDI G
Sbjct: 421 TVRIVSEILESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQVLVLSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDHLG MDFKV GT +G+TA+QMD+KIGGI+  +M  AL QAK GRLHIL  M++ L+E
Sbjct: 481 LEDHLGDMDFKVTGTKNGVTALQMDIKIGGITAGLMREALAQAKAGRLHILGCMAQALTE 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  F PR+  M I  D+IR+VIG GGK+IR I+ +TG K+N++D G V IASS  A
Sbjct: 541 PRTKLSAFAPRIFPMKIKQDKIRDVIGPGGKMIRSIIAETGVKINVEDTGDVTIASSDEA 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI+ +T+  EV KIY G V K+MDFGAFV      DGLVHISQL+  RV   +
Sbjct: 601 SAQKAIDMIKRLTEEVEVGKIYLGTVRKIMDFGAFVEVLPGTDGLVHISQLAHHRVKAVT 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D V EGD V VK+L+ D +GKI+LS K       
Sbjct: 661 DEVSEGDQVMVKVLEIDKQGKIRLSRKEAMPAPA 694


>gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 699

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/701 (44%), Positives = 455/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TVVL+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  LI+R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  S+P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEVSTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+DAV MVE  A +L E+ +L AI+F H+  K + E   + AK+  KE I  + ++   
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEEFAKLYGKENIEFEKEEVLP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEG 289
            +++ +     + L+ +     K  R + +D L++++++ F  E+               
Sbjct: 241 LVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFIEENYPDIPEEELPEDIIS 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+ DEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKSDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 RYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R 
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARQ 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTGA V+I D
Sbjct: 541 QILEVMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGATVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 732

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/694 (41%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+  +   DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIVTVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
                D+V+ GD V VK++  D++G++  SMK +
Sbjct: 662 TNNVEDLVQIGDFVDVKVIKIDEKGRVDASMKAL 695


>gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum]
          Length = 713

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/704 (48%), Positives = 462/704 (65%), Gaps = 8/704 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +   VE    G+ ++LETGR+A+Q+DG+V+     TVV+AT V  +  K G DF PLTV
Sbjct: 1   MNPIFVEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQER YA GKIPGG+ +RE +P+E EIL SR+IDR +RPLF + +  +TQ+I +V+  D
Sbjct: 61  DYQERAYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISID 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
                 V+++VA+SAAL +S +PF  PV   +V  ++G +++NP LDE +  +LDL V+G
Sbjct: 121 RGGISDVMAVVASSAALYVSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSK 239
           T+DA++MVE + N++SE+  L AI   H    P+IEA  KL  M  KE   + +     K
Sbjct: 181 TRDAIMMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAVPIPPK 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQ----IDDLKKKMVSYFSSEHSS--WNEGEIVS 293
           + + +  M    LR +  I  K  R +Q    + D+++K++  FS+        E EI +
Sbjct: 241 VMDMVESMGAPRLREALKIAVKQERQEQTAQILGDVREKILQEFSASSPEMIVEEREIFN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F +++ +++R ++LD KVR DGR    +R I+ +VG+L RTHGS+LF RG+TQ++ V T
Sbjct: 301 AFHELERRIMREMILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVAT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ +D+L G     FM+HYNF P + GE   M  P RREIGHG LA RA+ PVL
Sbjct: 361 LGTSDDEQRIDALEGESTKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVL 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY++R+VS+I ES+GSSSMATVCG SLA+MDAG+PI   VAGIAMGL+K+GD  
Sbjct: 421 PARDSFPYSIRLVSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRI 480

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI G EDHLG MDFKV GT++GITA+QMD+KI GI+  +M  +LQ+A+ GRL+I+ 
Sbjct: 481 AILSDILGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMRESLQKAREGRLYIME 540

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   L  SR  +  F PR+  + I  D+IR VIG GGKVIRGI E+TGAK+ IDD G +
Sbjct: 541 KMKMALPSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAKIEIDDSGLI 600

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +IAS+     + A +MI  I +  +V KIY G+V  V D+GAFV       GL HISQL 
Sbjct: 601 QIASTDEVAAQKAIDMINQIVEEVQVGKIYLGRVKTVADYGAFVELFPGTTGLCHISQLE 660

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             RV K SDVV EGD + VK L+ D +GKI+LS K      G  
Sbjct: 661 DRRVEKVSDVVSEGDLILVKALEVDRQGKIRLSRKEAIAEVGAD 704


>gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
 gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
          Length = 701

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/693 (48%), Positives = 471/693 (67%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVV-YDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V +   V   ++    + FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GP+  A+V +     Y+LNP  ++ +  SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI A+ +LA   AK         + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L   +       +  +  I  K  R  ++ +LK ++V+  S E    +  E+ + F +
Sbjct: 241 TALLGAIRSEFGAAISDAYTITVKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR+I  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSISAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G  F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L E  P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter
           fumaroxidans MPOB]
 gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 699

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/694 (48%), Positives = 467/694 (67%), Gaps = 4/694 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H+V++E  GRP+  E G IARQ+ G+VL  YG+TVVL     +  +++G DF PL V+Y
Sbjct: 2   KHSVQVEVGGRPMVFEAGEIARQAGGSVLMRYGDTVVLIAATKEDRIREGIDFVPLMVDY 61

Query: 64  QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           QE +YA G+IPGG+ RRE  RP+E E L SR+IDR IRPLF K Y  ETQV+  V+  D+
Sbjct: 62  QEMSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDM 121

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           E+ P VV++  AS AL +S +PF+GPV   +V  ING + +NP   E  +  L++ V+G+
Sbjct: 122 ENEPDVVALTGASTALHISPVPFQGPVAAVRVGRINGSFAINPSAKELLESDLNVVVAGS 181

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DAV+MVE  A+ +SED ++DAI FGH    P+++A  +L +  A           ++ L
Sbjct: 182 RDAVVMVEGGADFVSEDDLVDAIDFGHKAILPILDAQDELQRRIAPVKEAPPEVVRNESL 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + +      ++R     PEK+ R  +   LK+++ +   S+       +I ++ ED++ 
Sbjct: 242 VQAVRDAAAAEMRAVMTTPEKHPRRDRKKALKERIQAELVSDDPD-RPKQIDNILEDLEK 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +VVR +M+++  R+DGR  + +R I+ Q G+L RTHGS++F RG+TQ + VVTLG+  DE
Sbjct: 301 EVVRRMMVEEGRRIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLAVVTLGSSSDE 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +++L+G     FM+HYNF   + GEV  +  P RREIGHG LA R++  VLP+  +FP
Sbjct: 361 QKIEALAGETFKSFMLHYNFPAFSVGEVRPLRGPGRREIGHGALAERSVKAVLPRDGEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSE+ ES+GSSSMATVCGSSLALMDAGVPI++PV GIAMGLVK+GD  I+LSDI 
Sbjct: 421 YTIRVVSEVLESNGSSSMATVCGSSLALMDAGVPITEPVGGIAMGLVKEGDKIIVLSDIL 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKV G++ GITA+QMD+KI GI   IM  AL+QA+ GR+ IL +M +VLS
Sbjct: 481 GDEDHLGDMDFKVTGSERGITAIQMDVKIAGIDRGIMQRALEQARAGRIFILGKMKEVLS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L  + PRV  + I P++IR+VIG GGKVIR IV +TGAK++I+D G V I S   
Sbjct: 541 APRPELSPYAPRVITIMINPEKIRDVIGPGGKVIRSIVAETGAKIDIEDSGKVVIMSPDG 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  + A E IR +T  PEV ++Y  ++V+V DFGAF       +GL+HISQL   RV K 
Sbjct: 601 AACDKAVERIRGLTQEPEVGQLYMSRIVRVTDFGAFAEILPNIEGLIHISQLEHRRVRKV 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +DVV+EGD V VK+++ D  G+I+LS K   +  
Sbjct: 661 TDVVQEGDEVLVKVIEIDKDGRIRLSRKAALEKP 694


>gi|307704339|ref|ZP_07641256.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK597]
 gi|307622099|gb|EFO01119.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK597]
          Length = 737

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 437/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 738

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/706 (46%), Positives = 463/706 (65%), Gaps = 20/706 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E+   GR L LETGR+A+Q+ GAVL TYG+T+VL T    ++ +D  DFFPLTV+Y+ER 
Sbjct: 10  EMSLGGRKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNTRD-IDFFPLTVDYEERL 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RP+E  IL  R+IDR IRPLF K  +NE QV+  V+  D +++P 
Sbjct: 69  YAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVLSVDQDNAPE 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           + +M+ ASAAL +S +P + P+ G  V  ++GQ+V+NP + + +   + L V+GT DAV+
Sbjct: 129 IAAMIGASAALHISKIPLKKPIGGVIVGRVDGQFVINPVVRQAENSDMHLVVAGTDDAVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDF-SKL 240
           MVE  A ++ ED +L+AI+FGH   K V++ I            A+E +VI   ++   +
Sbjct: 189 MVEAGAKEVPEDQILEAIMFGHEVVKEVVKFIDDFRVAALELGLAQEKMVIPEPEYDPAI 248

Query: 241 EEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            E +    +E +R +          K  R   ++++   + + F  +    NE +I  + 
Sbjct: 249 VEVVLPKAEEVIREAVLYCSREKLTKKDREAYMEEVMTNLQTSFLEQFPE-NEKDIKDLI 307

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E  + KVVR ++   K+R+DGR  + VR IS +VG+L RTHGS LF RG TQ + V TLG
Sbjct: 308 EKAEKKVVRRIITHDKLRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTVATLG 367

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              DEQ +D L   +   +M HYNF P +TGE   M +P RREIGHG LA RA+ P++P 
Sbjct: 368 CVSDEQILDGLGLEETKRYMHHYNFPPFSTGETKPMRSPGRREIGHGALAERALEPMIPP 427

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYTLR+VSE  ES+GS+SM +VCGS+LALMDAGVPI  PVAG+AMGL+ + D F +
Sbjct: 428 EEVFPYTLRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIMEEDQFTV 487

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+  +   AL QA RGR+HIL++M
Sbjct: 488 LTDIQGLEDHLGDMDFKVAGTANGITALQMDIKIPGITREVFEQALAQAYRGRMHILSKM 547

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +V+   R ++  + P +    I PD+IR+VIG GGK+I+ +VE+TGA ++I+DDG V I
Sbjct: 548 LEVIPAPRPEISPYAPSIIRTTIHPDKIRDVIGPGGKIIKKLVEETGADIDIEDDGRVFI 607

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649
           A+    + + A E+I+SIT   EV K+YKG+V +V DFG FV           ++GLVHI
Sbjct: 608 AAVDREKGKRALEIIQSITSEVEVGKLYKGKVTRVTDFGCFVEVIPGVLGLPGKEGLVHI 667

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SQL  +RV KT DVVKEGD + VK + +D +G++KLS K   ++ G
Sbjct: 668 SQLDFQRVEKTEDVVKEGDVITVKAIGYDHQGRLKLSRKEALRDMG 713


>gi|326564308|gb|EGE14538.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           103P14B1]
 gi|326574715|gb|EGE24651.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           101P30B1]
          Length = 695

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/696 (49%), Positives = 465/696 (66%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++ +VL   G   VL  VV       GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQAN-SVLVHMGGVSVLVAVVVRPEAIAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+         +      
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
           +L  ++ +     +  +  I  K  R  ++D+L  + +     E     +    +I  +F
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLG
Sbjct: 300 ETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP 
Sbjct: 360 TTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 420 AERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I
Sbjct: 540 NEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S E
Sbjct: 600 FGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 660 RVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|307706124|ref|ZP_07642943.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK321]
 gi|307618524|gb|EFN97672.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK321]
          Length = 737

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIISAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|93004911|ref|YP_579348.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter
           cryohalolentis K5]
 gi|123264798|sp|Q1QEN9|PNP_PSYCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|92392589|gb|ABE73864.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter
           cryohalolentis K5]
          Length = 700

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/699 (49%), Positives = 470/699 (67%), Gaps = 7/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + +ETGRIARQ++ ++L   G   VL   V     K+GQ+FFPLT
Sbjct: 3   MFNTIKREFQYGNQQVVIETGRIARQAN-SILVHMGGVTVLVAAVVKSDAKEGQNFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPG Y +RE R +E+E L SR+IDR IRPLF + Y NE Q+   V+  
Sbjct: 62  VNYQEKMYAAGKIPGAYGKREGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D   S  + +++ ASAAL +S  PF GPV  A+V +ING+YVLNP L+E  +  LDL V+
Sbjct: 122 DKTQSADIAALIGASAALAISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+ +A           +   ++
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHQQQQIVIDNIASMAAEIGTAKQQYTAPVRNQ 241

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF----SSEHSSWNEGEIVSV 294
            LE  M +     +  +  I +K  R  ++D++K   ++       SE  +    E+  +
Sbjct: 242 TLETGMKEQFGTQVSDAYTITDKQARYSKLDEIKDAALAALAGDAESESYADTVSELKEI 301

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+V  TL
Sbjct: 302 YNDLKYRTVRDNILSGKPRIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTL 361

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D   +DSL+GT R+ FM+HYNF   + GE  R G P RREIGHGRLARR +  +LP
Sbjct: 362 GNTRDVNMIDSLAGTIRDHFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGVQAMLP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            + +FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI  PVAGIAMGLVK+G+ F 
Sbjct: 422 DSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKEGERFA 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAG+  GITA+QMD+KI GI+ +IM  AL+QA  GR+HIL+ 
Sbjct: 482 VLSDILGDEDHLGDMDFKVAGSKDGITALQMDIKIEGITPDIMEQALKQAHAGRIHILDA 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+KVL ESR ++    P   ++ I PD+IR+VIG GG  IR + E+TGA ++IDD GT++
Sbjct: 542 MNKVLPESRTEINAHAPNYAVIEINPDKIRDVIGKGGATIRQLTEETGAVIDIDDAGTIR 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   + A  +AA   I +IT   EV K Y+G V +++DFGAF++     DGLVHISQ++ 
Sbjct: 602 IFGENKAATKAAIAKIEAITAEVEVGKTYEGTVARIVDFGAFINVLPNTDGLVHISQIAD 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           ERV   SD +KEG  V V + D D+RG+IKL+MK ++Q+
Sbjct: 662 ERVENVSDYLKEGQIVKVLVQDVDNRGRIKLTMKGIEQS 700


>gi|225860589|ref|YP_002742098.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230931|ref|ZP_06964612.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254667|ref|ZP_06978253.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|254782741|sp|C1CQ76|PNP_STRZT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225728353|gb|ACO24204.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327390327|gb|EGE88668.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA04375]
          Length = 737

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|225858425|ref|YP_002739935.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae 70585]
 gi|254782737|sp|C1C5V9|PNP_STRP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225720166|gb|ACO16020.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae 70585]
 gi|332202469|gb|EGJ16538.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA41317]
          Length = 737

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|326559316|gb|EGE09743.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           7169]
 gi|326569953|gb|EGE20000.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC1]
 gi|326572889|gb|EGE22874.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           CO72]
 gi|326573663|gb|EGE23621.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           O35E]
          Length = 695

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/696 (49%), Positives = 465/696 (66%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++ +VL   G   VL  VV       GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQAN-SVLVHMGGVSVLVAVVVRPEAIAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+         +      
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNAKQEFVAPAINE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
           +L  ++ +     +  +  I  K  R  ++D+L  + +     E     +    +I  +F
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLG
Sbjct: 300 ETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP 
Sbjct: 360 TTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 420 AERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I
Sbjct: 540 NEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S E
Sbjct: 600 FGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 660 RVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
 gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
          Length = 701

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/693 (48%), Positives = 475/693 (68%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVV-YDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V +   V   ++    + FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             ++ P + +M+  SAAL +SG+PF+GP+  A+V +     Y+LNP  ++ +  SLD+ V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI A+ +LA   AK       + + 
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQSVINAVKELAAEAAKPTWAWAPQAEA 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L   +       +  +  I  K  R  ++ +LK+++V+  S E    +  ++ + F +
Sbjct: 241 TELLGAIRSEFGAAISDAYTITVKADRYARLGELKEQVVAKLSGEEGQPSASDVKAAFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT 
Sbjct: 301 IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP   
Sbjct: 361 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+
Sbjct: 421 VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++ +SR +L E  P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI  
Sbjct: 541 IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV
Sbjct: 601 ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 661 EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 693


>gi|288904442|ref|YP_003429663.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
           UCN34]
 gi|306830475|ref|ZP_07463645.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977438|ref|YP_004287154.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731167|emb|CBI12715.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
           UCN34]
 gi|304427500|gb|EFM30602.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177366|emb|CBZ47410.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 727

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/700 (41%), Positives = 441/700 (63%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E  +AGRPL +E G++A+Q++GA +  YGE+ +L+  V  + +  G DFFPL VNY
Sbjct: 3   KQTFETTFAGRPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP   + + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +   +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIVAAVGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+      DL+ +  + EK  R    + +K+++++ +   ++     E     +  + E
Sbjct: 242 AEIIAAYNADLQKAVQVEEKKAREAATEAVKEQVIAVYEERYADDENYETIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R QL    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++IDD+G V I 
Sbjct: 542 ATIPAPRAQLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS++S  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEISWSR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  SDV++ G+ V VK++  DD+G++  SMK +     +
Sbjct: 662 TANVSDVLEVGEEVDVKVIKVDDKGRVDASMKALLPRPPR 701


>gi|322390877|ref|ZP_08064385.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142390|gb|EFX37860.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 903]
          Length = 740

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++G+ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDTDLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAQVDFLPRVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G++  SM+ +     KP
Sbjct: 662 TNRVEDLVAIGDEVDVKIIKIDEKGRVDASMRALLPRPPKP 702


>gi|187611307|sp|Q8DQT0|PNP_STRR6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611312|sp|Q04LT4|PNP_STRP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 737

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|320547742|ref|ZP_08042026.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
           ATCC 9812]
 gi|320447502|gb|EFW88261.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
           ATCC 9812]
          Length = 723

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/700 (41%), Positives = 441/700 (63%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E  +AGRPL +E G++A+Q++GA +  YGE+ VL+  V  + +  G DFFPL VNY
Sbjct: 3   KQTFETTFAGRPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSEEQKEKSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHEAVQELIAFQEEIVAAVGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+      DL+ +  + EK  R    + +K+++ + +   ++     E     +  + E
Sbjct: 242 AEIIAAYNADLQKAVQVEEKKAREAATEAVKEEVTAVYEERYADDENYETIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLGAEYKKRFLHHYNFPQFSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R  L    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++ID++G V I 
Sbjct: 542 ATIPAPRTHLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+ A+E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRAKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDTTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  SDV++ GD V VK++  DD+G++  SMK +     +
Sbjct: 662 TANVSDVLEVGDEVDVKVIKVDDKGRVDASMKALLPRPQR 701


>gi|306832712|ref|ZP_07465849.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304425168|gb|EFM28297.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 727

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/700 (41%), Positives = 441/700 (63%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E  +AGRPL +E G++A+Q++GA +  YGE+ +L+  V  + +  G DFFPL VNY
Sbjct: 3   KQTFETTFAGRPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP   + + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +   +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIVAAVGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+      DL+ +  + EK  R    + +K+++++ +   ++     E     +  + E
Sbjct: 242 AEIIAAYNADLQKAVQVEEKKAREAATEAVKEQVIAVYEERYADDENYETIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R QL    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++IDD+G V I 
Sbjct: 542 ATIPAPRAQLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS++S  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEISWSR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  SDV++ G+ V VK++  DD+G++  SMK +     +
Sbjct: 662 TANVSDVLEVGEEVDVKVIKVDDKGRVDASMKALLPRPPR 701


>gi|183603103|ref|ZP_02712475.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae SP195]
 gi|183603451|ref|ZP_02716891.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231415|ref|YP_002510567.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|254782738|sp|B8ZMC0|PNP_STRPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183572923|gb|EDT93451.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae SP195]
 gi|183577007|gb|EDT97535.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC3059-06]
 gi|220673875|emb|CAR68380.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|332074399|gb|EGI84875.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA17570]
          Length = 737

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMTGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK405]
 gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 733

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/700 (41%), Positives = 436/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTIFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHQAVKELIAFQEEIVVAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 VEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIG 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I S+    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIASLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11]
          Length = 699

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I  +  +   
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R + +D L+++++  F           E       
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEELPEDIIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG+ V+I D
Sbjct: 541 EILELMNSTISKP-AELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
 gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
          Length = 709

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/695 (49%), Positives = 468/695 (67%), Gaps = 5/695 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               I +    L LETG IARQ+ GAV+ T  +TVVL TVV  +++K GQDFFPLTV+YQ
Sbjct: 4   IKKSITYGRHQLTLETGEIARQAHGAVVVTMDDTVVLVTVVGAKNIKPGQDFFPLTVDYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER+YA G+IPG + +RE RP+E E L SR+IDR IRPLF + + NE Q++  VM  D E 
Sbjct: 64  ERSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADNEI 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P + S++  SAAL LSG+PF+GP+  A+V YIN +YVLNP   E + + L+L V+GTQ 
Sbjct: 124 DPDIPSIIGTSAALTLSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLNLVVAGTQH 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEE 242
           AVLMVE EA +LSE+V+L A+ +GH + + VI+AI++ A                S  EE
Sbjct: 184 AVLMVESEAIELSEEVMLGAVTYGHEQMQIVIDAINEFADEAGVTAWDWTPPAKDSAFEE 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAK 301
           +++ M + DLR +  I +K  R + I   ++++ +       +       +  F  +++K
Sbjct: 244 KIAMMAEADLRQAYKIKQKQTRSEAIKTTRERISNELGVGTENGPELQAFMEAFFSLESK 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR  +LD + R+DGR + TVR I+ + G+L RTHGS+LF RG+TQA+ + TLGT  DEQ
Sbjct: 304 IVRNQILDGEPRIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DSL G     F++HYN  P ATGE+ R+G P RREIGHGRLA+RA+  VLP   +F Y
Sbjct: 364 KIDSLQGDYNERFILHYNMPPYATGEIGRVGTPKRREIGHGRLAKRALVAVLPPPEEFGY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           +LR+VSEITES+GSSSMA+VC   LALMDAGVP+   VAGIAMGL+KDG+ F +L+DI G
Sbjct: 424 SLRVVSEITESNGSSSMASVCSGCLALMDAGVPLKAHVAGIAMGLIKDGNRFAVLTDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT+ GITA+QMD+KI GI++ IM  AL QA  GR+HIL  M + L  
Sbjct: 484 DEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMHAALIQAHEGRMHILQIMKQALPS 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           +R  +    PR+  + I P++IR+VIG GG VIR + E+TG  ++I DDG V IA  S  
Sbjct: 544 TREDISIHAPRIIKLKINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGQVTIACVSAE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             E A++ I  IT   EV KIY G V+K++DFGA V     +DGL+HISQ++ ERV   S
Sbjct: 604 GGELAKKRIEDITAEVEVGKIYDGVVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNVS 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNT 694
           D + EG  V VK+L+ DD+G+++LSMK V  D+N 
Sbjct: 664 DHLNEGQQVRVKVLEADDKGRLRLSMKAVSSDENP 698


>gi|269926894|ref|YP_003323517.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790554|gb|ACZ42695.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 733

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/693 (46%), Positives = 454/693 (65%), Gaps = 7/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E  WAGR L +ETGRIA Q+ GAVL  YG+TVVL T V   +     DFFPLTV Y
Sbjct: 2   ISKFETIWAGRKLSIETGRIAGQAHGAVLVQYGDTVVLTTAVRADAPS-NMDFFPLTVQY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG++RRE RP+EN  L +R+ DR +RPLF K YK E Q+I  V+  D +
Sbjct: 61  EERMYAAGKIPGGFIRREGRPSENATLAARLTDRPLRPLFPKGYKYEVQIITTVLSTDQQ 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P ++S++  SAAL +S +PF GPV  A+V YI+G+Y+LNP  D+ ++  LDL V+GT+
Sbjct: 121 NEPDLLSIIGGSAALSISDIPFLGPVGAARVGYIDGEYILNPTADQREESLLDLTVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DAV+MVE  A++L E V+L A+ FGH   +  I+   +L  +  K     D  +   +  
Sbjct: 181 DAVIMVEGSAHELPESVMLGAVEFGHRMLQDTIKLQEQLVAVAGKPKHHFDVPEVDEEFT 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---SSWNEGEIVSVFEDI 298
             + + + + L+ +   P+K +R + I ++K  +++   S+     +   G +   FE +
Sbjct: 241 ARVREWLGDKLKEAVNNPDKVLREEAIAEVKANLIAAMISDDVADPADLTGAVAREFETL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + VR  +L++ VR DGR  + +R +SA+VGLL RTHGS+LF RG TQ I VVTLGTR 
Sbjct: 301 LKEEVRNRILNEGVRPDGRGPKEIRPVSAEVGLLPRTHGSALFTRGQTQIISVVTLGTRR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           +EQ +D L   +   FM HYNF P +TGE+  +  PSRR+IGHG L  R++ PV+P   +
Sbjct: 361 EEQILDDLGMEESKRFMHHYNFPPYSTGEIRPLRGPSRRDIGHGALVERSLLPVMPSEEE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILS 477
           FPYT+R+VSE+  S+GSSSM +VCGS+LALMDAGVPI  PV+G+AMGLV   D  ++IL+
Sbjct: 421 FPYTVRVVSEVVSSNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTGPDGKYVILT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKVAGT+ G+T +QMD+K  GI+ +IM  A +QA+ GR++IL +M +
Sbjct: 481 DIQGIEDALGDMDFKVAGTEKGVTGLQMDIKTTGITFDIMREAFEQAREGRMYILGKMLE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + E R  L  + PR+  M I P++I  VIG GGK IR I + TG++++I+DDGT+ I S
Sbjct: 541 AIPEVRSTLSGYAPRILTMKINPEKIGAVIGPGGKTIRAITDATGSQIDIEDDGTILIYS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++    E AR  I  +T   EV ++Y G+VV +M +GAFV     +DGLVHIS+LS  RV
Sbjct: 601 TNAEGAEEARRRIEMLTRDIEVGQVYTGKVVGIMPYGAFVELAPGKDGLVHISELSDTRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +  DVVK GD + V + D D  GKI LS + V
Sbjct: 661 NRVEDVVKLGDEITVMVTDIDRNGKISLSRRAV 693


>gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
 gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
          Length = 701

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/691 (50%), Positives = 468/691 (67%), Gaps = 5/691 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
              I +    L +ETG IARQ+ GAVL +  +TVVL TVV  +  K  QDFFPLTV+YQE
Sbjct: 5   KKTIAFGKHQLTIETGEIARQASGAVLVSLDDTVVLVTVVGRKDAKPEQDFFPLTVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +TYA GKIPG + +RE R +E EIL SR+IDR +RPLF + + NE Q+I  VM  D E  
Sbjct: 65  KTYAAGKIPGSFFKREGRASEKEILTSRLIDRPLRPLFPESFYNEVQIIATVMSSDSEID 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
             + S++ ASAAL +SG+PFEGP+  A+V Y NGQY+LNP   E     +DL V+GT  A
Sbjct: 125 SDIPSLIGASAALAISGIPFEGPIAAARVGYANGQYLLNPTKTELVTSQMDLVVAGTDRA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEEE 243
           VLMVE EA QLSE+V+L A++FGH + + VI AI+++A+   K             L  +
Sbjct: 185 VLMVESEAQQLSEEVMLGAVMFGHEQFQIVINAINEMAEAVGKPMWDWTPPAKNEALIAQ 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++++ + +L+ +  I  K  R   I  +  K+++  S       +  +  +F  ++AK+V
Sbjct: 245 IAELAEAELQAAYAIRSKQERTDAISAIHSKVLASVS---PDLEKNAVNELFGALEAKIV 301

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +L  + R+DGRD+ TVR I+ + G+L RTHGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 302 RGQILSGEPRIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKV 361

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L G   + FM+HYNF P ATGE  R+G+P RREIGHGRLA+RA+  VLP    F Y +
Sbjct: 362 DALQGEFTDRFMLHYNFPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYAV 421

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RIVSEITES+GSSSMA+VCG  L+++DAGVP+   VAGIAMGL+K+G+ F +LSDI GDE
Sbjct: 422 RIVSEITESNGSSSMASVCGGCLSMLDAGVPLKAHVAGIAMGLIKEGNRFAVLSDILGDE 481

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAG+++GITA+QMD+KI GI+  IM  AL QAK GRLHIL  M + +S  R
Sbjct: 482 DHLGDMDFKVAGSENGITALQMDIKINGITREIMQAALSQAKEGRLHILGIMKESMSGVR 541

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L EF PR+  M I P++IR+VIG GG VIR + E+TG  ++IDD G + I+S +    
Sbjct: 542 SELSEFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDAGNITISSVNGEAG 601

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A++ I  I    EV KIY+G VVK++DFGA ++    +DGL+HISQ++ ERV    D 
Sbjct: 602 ELAKKRIEDIAMDVEVGKIYEGPVVKLLDFGALINILPGKDGLLHISQIAHERVNSVGDY 661

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +KEG  V VKLL+ DDRG++KLSMK +    
Sbjct: 662 LKEGQVVRVKLLEMDDRGRMKLSMKALLDAP 692


>gi|326568253|gb|EGE18335.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC8]
          Length = 695

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/696 (49%), Positives = 465/696 (66%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++ +VL   G   VL  VV       GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQAN-SVLVHMGGVSVLVAVVVRPEAIAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+         +      
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
           +L  ++ +     +  +  I  K  R  ++D+L  + +     E     +    +I  +F
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELATEALVLAGDETSDDYADKVAQIKELF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLG
Sbjct: 300 ETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP 
Sbjct: 360 TTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 420 AERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I
Sbjct: 540 NEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S E
Sbjct: 600 FGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 660 RVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 695


>gi|296113971|ref|YP_003627909.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
           RH4]
 gi|295921665|gb|ADG62016.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
           RH4]
          Length = 696

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/697 (49%), Positives = 465/697 (66%), Gaps = 6/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    E ++  + + LETGRIARQ++ +VL   G   VL  VV       GQ+FFPLT
Sbjct: 1   MLNPIRQEFQYGNQQVVLETGRIARQAN-SVLVHMGGVSVLVAVVVRPEAIAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+         +      
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
           +L  ++ +     +  +  I  K  R  ++D+L  + +     E     +    +I  +F
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLG
Sbjct: 300 ETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP 
Sbjct: 360 TTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 420 AERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I
Sbjct: 540 NEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S E
Sbjct: 600 FGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           RV   SD +KEG TV V++ D D+RG+IKL+MK V+Q
Sbjct: 660 RVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVEQ 696


>gi|322377809|ref|ZP_08052298.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
 gi|321281232|gb|EFX58243.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
          Length = 737

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++  +  + L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLRVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|149021550|ref|ZP_01835605.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930246|gb|EDK81231.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 737

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 442/701 (63%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI +PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKEPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|312867935|ref|ZP_07728139.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis F0405]
 gi|311096339|gb|EFQ54579.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis F0405]
          Length = 740

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++G+ V+NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGEIVINPTQEQAEHSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNRVEDLVAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 702


>gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK49]
          Length = 733

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3   KQVFKTVFAGRDLVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASPQMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSEDV+L+A++ GH   K +I    ++     KE   ++      +L+
Sbjct: 182 EAINMVESGAKELSEDVMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++    E      ++  + E
Sbjct: 242 AEIIVAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYVDHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR    +R + A+V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVNEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVV+ GD V VK++  D +G++  SMKV+     K
Sbjct: 662 TNNVEDVVQIGDEVDVKVIKIDAKGRVDASMKVLLPRPPK 701


>gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira
           crunogena XCL-2]
 gi|123755229|sp|Q31GJ9|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena
           XCL-2]
          Length = 694

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/692 (48%), Positives = 470/692 (67%), Gaps = 5/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 ++    ++ ETG IARQ+DGAV+   G+T +L TVV  ++ K GQDFFPLTV Y
Sbjct: 3   KFIKSFQYGKHEVRFETGEIARQADGAVMVAMGDTQLLVTVVGAKNAKAGQDFFPLTVQY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+L+RE RP+E E L SR+IDR IRPLF K + NE QVI  V+  D E
Sbjct: 63  QEKAYAAGRIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLDPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
               V +M+  SAAL +SG+PF+GP+  A V Y +  Y+LNP   E  +  L+L V+GT 
Sbjct: 123 IGTEVPAMLGTSAALSISGIPFDGPIGAAVVGYKDNDYILNPSSQELQESDLELSVAGTS 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           DAVLMVE EA++LSE+++L A++FGH + +  I+AI +L     K     ++ +    L+
Sbjct: 183 DAVLMVESEASELSEEIMLGAVMFGHEQMQVAIDAIKELKAEVGKPAWNWEAAEEDIDLK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSS-WNEGEIVSVFEDI 298
            ++   I+ D+  +  I +K  R   ID  K K++   +   E+   ++ G+I  +   +
Sbjct: 243 TKVFDAIRSDIEAAYDIADKMDRYAAIDAAKTKVMEALAATEENPEGYDAGDIEKMVGKL 302

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q ++VR  ++  + R+DGRD++T+R I  QVG+L + HGS+LF RG+TQAIVV TLGT +
Sbjct: 303 QKEIVRGRIIAGEPRIDGRDTQTIRSIDCQVGILPKVHGSALFTRGETQAIVVTTLGTEK 362

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D + VD L+G+  + FM+HYNF P + GE  R+G+P RREIGHG LARR +  +LP   +
Sbjct: 363 DAKMVDDLTGSYNDRFMLHYNFPPYSVGECGRVGSPGRREIGHGMLARRGVAALLPTADE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMATVCG+S++LM AGVP++ P+AGIAMGLVK+   F +LSD
Sbjct: 423 FPYTIRVVSEITESNGSSSMATVCGTSMSLMHAGVPLAAPIAGIAMGLVKEESGFAVLSD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT+ G+TA+QMD+KI GI++ IM +AL+QAK GRLHIL EM K 
Sbjct: 483 ILGDEDHLGDMDFKVAGTEQGVTALQMDIKITGITQEIMHIALKQAKEGRLHILKEMEKA 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  S   +    PR   + + P+++R +IG GG  IR I E+TG  + IDDDG VKIA+ 
Sbjct: 543 IGSSNQDVATTAPRFFTVKVKPEKVREIIGKGGATIRSITEETGVTIEIDDDGNVKIAAV 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                 AA+  I  IT  PE+ K+Y  +VVK++DFGAFV +   R+GLVH+SQ++ ERV 
Sbjct: 603 DDESANAAKARIAEITAEPEIGKVYDAKVVKIVDFGAFVSYMPGREGLVHVSQIADERVE 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             ++ +KEG  + V+L D D +G++KLS+K V
Sbjct: 663 DVNEYLKEGQEIKVRLTDVDKQGRVKLSIKAV 694


>gi|315612684|ref|ZP_07887596.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315315271|gb|EFU63311.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 754

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 20  KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 78

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 79  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 138

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 139 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 198

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 199 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 258

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 259 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAGILE 318

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 319 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDYLPRVHGSGLFTRGQTQALSVLTLAP 378

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 379 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 439 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 498

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 499 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 558

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 559 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 618

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 619 SSDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 678

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G+I  SMKV+     KP
Sbjct: 679 TNRVEDLVAIGDEVDVKVIKIDEKGRIDASMKVLLPRPPKP 719


>gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
 gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
          Length = 703

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I  +  +   
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R + +D L+++++  F           E       
Sbjct: 245 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEELPEDIIL 304

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG+ V+I D
Sbjct: 545 EILELMNSTISKP-AELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 703


>gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
 gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
          Length = 752

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/729 (45%), Positives = 467/729 (64%), Gaps = 34/729 (4%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +     
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----------- 467
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+           
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILXXXXXXXXXX 480

Query: 468 ---------------------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
                                                   G MDFKVAGTD+ ITA+QMD
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMDFKVAGTDNCITALQMD 540

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +K+ GI++ IM +AL QAK GRLHIL +M   +  +R +L    PR+  + I P++IR+V
Sbjct: 541 IKVQGITKEIMQVALAQAKEGRLHILGKMQSAMGHARTELSAHAPRMITVKINPEKIRDV 600

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG GG  I+ + ++TG  ++I +DGT+ IAS+S   +  A+  I  IT   EV KIY G 
Sbjct: 601 IGKGGSTIQALTKETGCTIDIQEDGTITIASTSSEGMAEAKRRIEGITAEAEVGKIYSGT 660

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V+K++DFGA V+    +DGL+HIS+++ ERV + SD VKEG  V VKLL  D++G+++LS
Sbjct: 661 VLKLLDFGAIVNILPGKDGLLHISEIANERVNQVSDYVKEGQLVRVKLLSTDEKGRMRLS 720

Query: 687 MKVVDQNTG 695
           +K      G
Sbjct: 721 IKAAKAEEG 729


>gi|319939878|ref|ZP_08014233.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319810889|gb|EFW07208.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 726

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/698 (40%), Positives = 438/698 (62%), Gaps = 8/698 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AG+ L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFKTTFAGKDLVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F+  ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFADGFRNEVQVINTVLSYDAD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y+NG+ V+NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEELMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLRVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++++ +  +++   E      ++  + E
Sbjct: 242 TEIVAGYNADLQKAVQVEEKLAREAATQAVKDEVIALYEEKYAEHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILQEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 RTIPAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I ++    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAALVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             K  D+V+ GD V VK++  D++G++  SMK +    
Sbjct: 662 TNKVEDLVQLGDEVDVKIIKIDEKGRVDASMKALLPRP 699


>gi|254303468|ref|ZP_04970826.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323660|gb|EDK88910.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 699

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/701 (43%), Positives = 449/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSAGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINMPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +   
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R   +D L+++++  F           E       
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDVIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG+ V+I D
Sbjct: 541 QILELMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
 gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
          Length = 703

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I  +  +   
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R + +D L+++++  F           E       
Sbjct: 245 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELIERFTQENYPDVPEEELPEDIIL 304

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG+ V+I D
Sbjct: 545 EILELMNNTISKP-AKLKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 703


>gi|322388265|ref|ZP_08061869.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           ATCC 700779]
 gi|321140937|gb|EFX36438.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           ATCC 700779]
          Length = 757

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H  +  +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 20  KHVFQTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 78

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 79  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 138

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++G+ ++NP  ++ + SL +L V+GT+
Sbjct: 139 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGEIIINPTQEQAESSLLELTVAGTK 198

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L A++ GH   K +I    ++     KE  V++      +L+
Sbjct: 199 HAINMVESGAKELSEEIMLQALLKGHEAVKELIAFQEEIVAAVGKEKAVVELLHVDEELQ 258

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+  +   DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 259 AEIIAVYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYQEKYANHEEFDRIMRDVAEILE 318

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  + R HGS LF RG TQA+ ++TL  
Sbjct: 319 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFVPRVHGSGLFTRGQTQALSILTLAP 378

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 379 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 439 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 498

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 499 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 558

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 559 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 618

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 619 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 678

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V+ GD V VK++  D++G++  SMK +     KP
Sbjct: 679 TNNVEDLVQIGDFVDVKVIKIDEKGRVDASMKALLPRPPKP 719


>gi|294784756|ref|ZP_06750044.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_27]
 gi|294486470|gb|EFG33832.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_27]
          Length = 699

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/701 (43%), Positives = 448/701 (63%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGSDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R   +D L+++++  F           E       
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG+ V+I D
Sbjct: 541 QILELMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I       E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVDKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|322392303|ref|ZP_08065764.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
           ATCC 700780]
 gi|321144838|gb|EFX40238.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
           ATCC 700780]
          Length = 751

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H  +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 20  KHVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 78

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 79  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 138

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 139 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 198

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 199 HAINMVESGAKELSEEIMLQALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 258

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+ +    DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 259 AEIIEAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 318

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  + R HGS LF RG TQA+ ++TL  
Sbjct: 319 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAGVDFVPRVHGSGLFTRGQTQALSILTLAP 378

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 379 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 439 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 498

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 499 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILAEALAQAKKARFEILDVIE 558

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 559 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 618

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS++S  R
Sbjct: 619 SSDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMSWTR 678

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  DVV  GD V VK++  D++G+I  SMK +     KP
Sbjct: 679 TNRVEDVVAIGDEVDVKIIKIDEKGRIDASMKALLPRPPKP 719


>gi|315221320|ref|ZP_07863243.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           F0211]
 gi|315189679|gb|EFU23371.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           F0211]
          Length = 726

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/698 (40%), Positives = 439/698 (62%), Gaps = 8/698 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AG+ L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQIFKTTFAGKELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDAD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y+NG+ V+NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+V+L+A++ GH   K +I    ++  +  KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEEVMLEALLKGHEAVKELIAFQEEIVAVVGKEKAEVELLRVDEELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++++ +  +++   E      ++  + E
Sbjct: 242 TEIVAGYNADLQKAVQVEEKLAREAATQAVKDEVIALYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL
Sbjct: 422 EDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILQEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 RTIPAPRTELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I ++    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIITALVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             K  D+V+ GD V VK++  D++G++  SMK +    
Sbjct: 662 TNKVEDLVQLGDEVDVKVIKIDEKGRVDASMKALLPRP 699


>gi|306829036|ref|ZP_07462227.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304428841|gb|EFM31930.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 737

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 437/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELVVETGKVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 TEIIAAYNSDLQKAVQVEEKLAREVATQAVKDQVTAVYQEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|171778426|ref|ZP_02919584.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282827|gb|EDT48251.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 730

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 439/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E  +AGRP  +E G++A+Q++GA +  YGE+ VL+  V  + +  G DFFPL VNY
Sbjct: 3   KQTFETTFAGRPFVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEFIINPSAEQKEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHEAVQELIAFQEEIVAAVGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+      DL+ +  + EK  R    + +K+++ + +   ++     E     +  + E
Sbjct: 242 AEIIAAYNADLQKAVQVEEKKTREAATEAVKEEVTAVYEERYADDENYETIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRIDEIRPLDAEIDFLPKIHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIVDGLGDEYKKRFLHHYNFPQFSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ IL
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGSNYTIL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILKEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R  L    P+++ + I  D+I+ VIG GG+ I  I+E+TG K++IDD+G V I 
Sbjct: 542 ATIPAPRTHLAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIEETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  SDV++ GD V VK++  DD+G++  SMK +     +
Sbjct: 662 TANVSDVLEVGDEVDVKVIKVDDKGRVDASMKALLPRPPR 701


>gi|289168431|ref|YP_003446700.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
 gi|288907998|emb|CBJ22838.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
          Length = 737

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 436/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 SEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1]
 gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1]
          Length = 895

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/700 (43%), Positives = 453/700 (64%), Gaps = 11/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                +E+ G+ L +E G +A+Q++G+VL  Y +TV+L+T V  +  KD  DFFPLTV Y
Sbjct: 3   KQVFNLEFYGKTLTVEAGELAKQANGSVLVRYDDTVILSTAVAGKEPKD-VDFFPLTVTY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D  
Sbjct: 62  EEKLYSVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +SP + +M  AS AL LS +PF GP+ G  V  I+G++ +N   ++ + SL +L V+GT+
Sbjct: 122 ASPEMAAMFGASLALCLSDIPFNGPIAGVNVGLIDGEFTINAGPEDMERSLINLEVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           +A+ MVE +A ++ E+ +L+A++FGH++ K +I    K+ + C KE I I   +  S + 
Sbjct: 182 EAINMVEADAKEVDEETMLNALMFGHDKIKELIAFQEKVVEACGKEKIEIPLFELDSAIV 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNE-----GEIVSVF 295
           EE+  + KE +  +  IP K  R   IDD+  ++V+ F + +++   E      ++  V 
Sbjct: 242 EEVESLAKERMIKAVSIPGKLERYGAIDDINAEVVTLFENRDYADLKEQAKVLKQVKIVL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++   VR ++ + K+R DGR  + VR ++AQ+ LL R HGS+LF RG+TQ + V TLG
Sbjct: 302 HDLEKDEVRRLITEDKIRPDGRKIDEVRPLNAQIDLLPRVHGSALFTRGETQVLSVCTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L    +  FM HYNF P + GE  RMGAP RREIGHG L  RA+  V+P 
Sbjct: 362 ALGEHQKIDGLGLEDQKRFMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALAQVIPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++C SS+ALM AGVPIS PV+G+AMGLVK GDD+ I
Sbjct: 422 EDEFPYTIRLVSEVLESNGSSSQASICASSMALMTAGVPISNPVSGVAMGLVKKGDDYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGT  GI A+QMD+KI GI++ I+  AL QA  GR  I++ M
Sbjct: 482 LTDIQGMEDHLGDMDFKVAGTKKGICALQMDIKIEGITKEILQEALAQANVGRQQIMDCM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVK 594
              ++E + +L  + P+V +M I P+QI++VIG GGK I  I+E++   K++I+ DG V 
Sbjct: 542 LGAIAEPKKELSPYAPKVFMMRIEPEQIKDVIGPGGKNINEIIEKSNDVKIDIEQDGRVT 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I       I  A ++I +I    EV ++Y G+VV+V D  AFV      +G +H+  ++ 
Sbjct: 602 IYHFDQDAIHTAAKLIENIVKKAEVGEVYDGKVVRVEDKFAFVELFEGTNGFLHVGDVAH 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           ER+ K SDV+K GDT  VK++   D+G + +S K +    
Sbjct: 662 ERINKVSDVLKVGDTAKVKVIKITDKG-VNVSRKALLPKP 700


>gi|169833588|ref|YP_001694072.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226703873|sp|B1IAA9|PNP_STRPI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168996090|gb|ACA36702.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 737

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++++ +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQTVKDQVIAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|15900497|ref|NP_345101.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TIGR4]
 gi|81532195|sp|Q97S28|PNP_STRPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|14972063|gb|AAK74741.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           TIGR4]
          Length = 737

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|172079486|ref|ZP_02707776.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043773|gb|EDT51819.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1873-00]
 gi|301793785|emb|CBW36174.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           INV104]
 gi|332203753|gb|EGJ17820.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA47368]
 gi|332204610|gb|EGJ18675.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA47901]
          Length = 737

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++ Q ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDDQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|331266884|ref|YP_004326514.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           Uo5]
 gi|326683556|emb|CBZ01174.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           Uo5]
          Length = 737

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 439/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+++    DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEITEAYNSDLQKAVQVEEKLARESATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|194398464|ref|YP_002037251.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae G54]
 gi|226702694|sp|B5E2A0|PNP_STRP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096717|sp|B2IMQ9|PNP_STRPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194358131|gb|ACF56579.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           G54]
 gi|301801461|emb|CBW34153.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           INV200]
          Length = 737

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|237650139|ref|ZP_04524391.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821670|ref|ZP_04597515.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 737

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V++ Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEAYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|307126791|ref|YP_003878822.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|306483853|gb|ADM90722.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|332077021|gb|EGI87483.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA17545]
          Length = 737

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/701 (41%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            AV MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAVNMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|220929129|ref|YP_002506038.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           cellulolyticum H10]
 gi|254782714|sp|B8I2R5|PNP_CLOCE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219999457|gb|ACL76058.1| 3' exoribonuclease [Clostridium cellulolyticum H10]
          Length = 703

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/705 (40%), Positives = 441/705 (62%), Gaps = 11/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  +E AGR L +ETG++A+ ++G+ L  YG+TV++++     + +DG DFFPL+
Sbjct: 1   MF--KSFSMELAGRTLTVETGKLAQLANGSALIRYGDTVIMSSATASAAPRDGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+ER YAVGKIPGG+++RE +P+E  IL SR+IDR IRPLF K  +N+  V+  VM  
Sbjct: 59  VDYEERLYAVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + ++SP + +M+ AS A+ +S +PF GP+ G  +  ++G+ ++NP  ++  +  + + ++
Sbjct: 119 EQDNSPEIAAMIGASVAISISDIPFNGPIGGVVLGLVDGEVIINPNEEQRAKSKMYVTLA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++ + M+E  A+ + +DV+ DAI  GH E K + + I+ + K   K     +S D   
Sbjct: 179 GTKEKITMIEAGADIVPDDVMFDAIKKGHEEIKKICDFINGIVKEVGKAKFTYESADVPA 238

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L E + +   + +R++    +K  R  ++  L ++  +  + +     E +I      +
Sbjct: 239 DLFEVVKEFAYDKMRIAVLATDKQDRDAKVSQLTEETQAALAEQFPEM-ESKINDALYKL 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + KVVR  +L +  R+DGR  + +R +SA+VG+L RTHGS LF RG TQ +  VTLG   
Sbjct: 298 EKKVVREYILKEGKRIDGRRLDEIRTLSAEVGILPRTHGSGLFERGQTQVLTTVTLGAMG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +   +   +M HYNF   + GE      P RREIGHG LA R++ PV+P   +
Sbjct: 358 DVQMLDGIDTEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTETE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFII 475
           FPY  R+VSE+  S+GS+S  +VCGS+LALMDAGVPI  PVAGI+ GLV D    D+F+ 
Sbjct: 418 FPYAFRLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEENPDNFVT 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
             DI G ED  G MDFKVAGT  GITA+QMD+K+ G+S  I+  A +  + GRL I+N+ 
Sbjct: 478 FMDIQGIEDFFGDMDFKVAGTTEGITAIQMDIKVDGLSYEIIRQAFELTRMGRLQIINDV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           + K + + R +L E+ P++    I P++IR+VIG GGK+I  I+ +TG K++I++DG V 
Sbjct: 538 ILKAIPQPRKELSEYAPKIITTNIDPEKIRDVIGPGGKMINKIIAETGVKIDIEEDGRVY 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +   A  + A ++I+ I    E  ++Y G+VV++  FGAFV     +DGLVHIS+L  
Sbjct: 598 ILTPDSAAAQKALKIIQGIAKDIEPGEVYLGKVVRITTFGAFVEILPGKDGLVHISKLDK 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV--VDQNTGKP 697
           +RV K  DVV  GD + VK+ + D +G+I LS K    ++NT + 
Sbjct: 658 KRVEKVEDVVSIGDEILVKVTEIDKQGRINLSRKDAMAEENTTEE 702


>gi|19705029|ref|NP_602524.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|81485419|sp|Q8RIA1|PNP_FUSNN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|19712941|gb|AAL93823.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 703

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/701 (43%), Positives = 452/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            +++ +     E L+ +     K  R   +D L+++++  F           E       
Sbjct: 245 LVKDFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 304

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 SYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + R+
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARI 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI+EQTGA V+I D
Sbjct: 545 QILELMNNTISKP-AELKSNVPRIQQITIPKDKIAALIGPGGKNIKGIIEQTGATVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   +++ S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDADTLEKTLKLVDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 703


>gi|307708303|ref|ZP_07644770.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
           12261]
 gi|307615749|gb|EFN94955.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
           12261]
          Length = 737

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 437/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++   +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTVVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKIIKIDEKGRVDASMKALLPRPPKP 702


>gi|307710641|ref|ZP_07647074.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK564]
 gi|307618584|gb|EFN97727.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK564]
          Length = 737

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 437/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 TEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYCAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
           DSM 2075]
 gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
           DSM 2075]
          Length = 749

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/694 (48%), Positives = 469/694 (67%), Gaps = 9/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V     GR   +ETG+IA+Q+ GAV   YGETVVL TVV D ++++G DF PLTV+YQ
Sbjct: 3   KKVATTIGGREFVIETGKIAKQASGAVWVQYGETVVLVTVVGDTNVREGIDFLPLTVDYQ 62

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           E +YA G+IPG + RRE  RP+E E L SR+IDR +RP  +K +  ETQ+I  VM  D  
Sbjct: 63  EMSYAAGRIPGNFFRREIGRPSEKETLTSRLIDRPVRPRMNKGWTFETQIIATVMSVDRV 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V++M  ASAALM+S +PF+GP+ G +V  ++GQ VLNP  ++ ++  L+L V+G++
Sbjct: 123 NEPDVMAMTGASAALMVSDVPFDGPIAGVRVGRVDGQLVLNPTAEQIEKSDLELLVAGSR 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDF 237
           DAV MVE  +  L ED +L+AI FGH   +P+++   +LA    K      P   D  + 
Sbjct: 183 DAVCMVEGGSLMLGEDEILEAIWFGHAGLQPLLDIQEELAAAVGKPDREFTPPASDDHEL 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  + +Q  +  L        K  R  +   LKK +++    E ++  EG++    E 
Sbjct: 243 TALVAQAAQSAEPSLAEVLSTKPKLERYAKKRLLKKAVLAAMG-EAAAGREGQVKEAVEH 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           + A+ +RT +L++  R+DGR    VR I  +VG+L RTHGS+LF RG+TQA+VV TLGT 
Sbjct: 302 LIAEGMRTAILEEGRRIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQALVVATLGTA 361

Query: 358 EDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            DEQ ++S+  G     F++HYNF P + GE  R+G P+RRE+GHG LARRA+  +LP  
Sbjct: 362 GDEQRIESVTEGDVFRHFLLHYNFPPYSVGEAKRLGGPNRRELGHGALARRAVEKILPAK 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY LR VSEITES+GSSSMA+VCGSS+ALMDAGVP+S+ VAG+AMGL+K+GD  ++L
Sbjct: 422 EDFPYCLRCVSEITESNGSSSMASVCGSSMALMDAGVPVSEAVAGVAMGLIKEGDKMVVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAG+  GI+A+QMD+KI GIS+ IM  AL+QA+ GRLHIL EM 
Sbjct: 482 TDIMGDEDHLGDMDFKVAGSARGISAVQMDIKISGISKEIMGQALKQAREGRLHILGEMQ 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R ++    PR+  + +P ++I+++IG GGKVIRGI  +T A+++IDDDGTV++A
Sbjct: 542 KAIDNPRQEISILAPRITTIHVPVERIKDIIGPGGKVIRGIQMETEARIDIDDDGTVRVA 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A    A EMI+ +    E N +Y+G+VV++MDFGAFV     RDGL+HIS+L   R
Sbjct: 602 AVDGAASLRAVEMIKELIQEVEENAVYEGKVVRIMDFGAFVEILPGRDGLIHISELDHTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V   +DV+KEGD V VK+L  DDRGKI+LS K +
Sbjct: 662 VRAVTDVIKEGDVVQVKVLGIDDRGKIRLSRKAL 695


>gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
 gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
          Length = 703

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/701 (43%), Positives = 450/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYIEKFYSTGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEINTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPKELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + AK+  KE I  +  +   
Sbjct: 185 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFAKLYGKENIEFEKPEVLP 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R + +D L+++++  F           E       
Sbjct: 245 LVKNFIDTNGYERLQQAVLTTGKKNREEAVDSLEEELMERFTQENYPDVPEEELPEDIIL 304

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKNYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RM +P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMSSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 RYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA + RL
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARL 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG  GK I+GI++QTG+ V+I D
Sbjct: 545 EILELMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPAGKNIKGIIDQTGSTVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDAETLEKTLKLIDSYVKEVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 703


>gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 695

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/694 (46%), Positives = 469/694 (67%), Gaps = 7/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           ++T         + LETGRIARQ+ GAVL +  +T VL TVV  + +  GQDFFPL+V+Y
Sbjct: 3   INTKSFVMGKHTITLETGRIARQAHGAVLVSMDDTQVLVTVVGSKKMHPGQDFFPLSVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+TYA GKIPGG+L+RE+RP+E E L SR+IDR IRPLF   + NE QV+I V+  + E
Sbjct: 63  IEKTYAAGKIPGGFLKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVLITVISANSE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
             P ++SM+  SAAL +SG+PF GP+  A+V Y NG+Y LNP   E     LD+ V+GT 
Sbjct: 123 VDPDIISMLGVSAALSISGIPFNGPIGSARVGYSNGKYTLNPTYTELVDSDLDMVVAGTD 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            A+LMVE EA++LSE ++LDAII+ H + +  I  I++       +    ++   ++ L 
Sbjct: 183 KAILMVESEASELSEKIILDAIIYAHEQYQVAITNIAEFVTQVGVQKWDWEAPATNEVLL 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300
             +     + +  +  I EK  R  ++ ++K   +    +E  + N   E+   F  ++ 
Sbjct: 243 SNIKSQFGKQINEAYKIKEKLNRHVKVGEIKTAAIEALVNEDKNGNSIDEVSKYFNKVEK 302

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             VR  +L+   R+DGRD+ETVR++  + G+L+ THGS+LF RG+TQA+VV TLG++ + 
Sbjct: 303 STVRERILNNDPRIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREA 362

Query: 361 QYVDSLSGTQRND--FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q ++ L  ++R +  F++HYNF P   GE+ R+G   RREIGHGRL RR I   LP   +
Sbjct: 363 QLIEKLESSERQNDYFLLHYNFPPYCVGEIGRVGTTKRREIGHGRLVRRGIAACLPSIEE 422

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA++CG+SL+LMDAGVPI  PVAGIAMGLVK+GD F IL+D
Sbjct: 423 FPYTVRVVSEITESNGSSSMASICGASLSLMDAGVPIKAPVAGIAMGLVKEGDRFTILTD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  GI A+QMD+KI GI+  IM +AL+QAK  RL+IL +M++V
Sbjct: 483 ILGDEDHLGDMDFKVAGTSRGINALQMDIKIQGITREIMEIALKQAKEARLNILGQMNQV 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E      + TP+  ++ I  D+IR++IG GG+ I+GI+  + A V++DD+G V I S+
Sbjct: 543 ICEPNTS-NKNTPKTAVIKIQTDKIRDLIGKGGETIKGIISTSSASVDVDDNGNVNIFSN 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A +M++ +T  P++ K+Y G+VVK++DFGAF++    +DGL+HIS+++ ERV 
Sbjct: 602 DQKSFDTAMQMVKDVTTTPKIGKVYTGKVVKIVDFGAFINIKPNQDGLLHISEIAHERVD 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           K  + +KEGD + VK+L  D RG+IKLS KV+ +
Sbjct: 662 KVENHLKEGDEIDVKVLSLD-RGRIKLSRKVLLE 694


>gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
 gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
          Length = 699

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/701 (44%), Positives = 452/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVILSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  LI+R+IDR IRP+F + +  +  ++  V+ +
Sbjct: 61  VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPEGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEVNTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+DAV MVE  A +L E+ +L AI+F H+  K + E     AK+  KE I    ++   
Sbjct: 181 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEVFAKLYGKENIEFTKEEVLP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            +++ +     + L+ +     K  R + +D L++++++ F           E       
Sbjct: 241 LVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFIGENYPDVPEEELPEDVIT 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+ DEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKADEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 RYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R 
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARQ 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+ I++QTGA V+I D
Sbjct: 541 QILELMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKSIIDQTGATVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAQDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|307703168|ref|ZP_07640114.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
 gi|307623243|gb|EFO02234.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
          Length = 737

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 436/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     + L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+    + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKVVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQV  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V  GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVAIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|309799898|ref|ZP_07694103.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           SK1302]
 gi|308116488|gb|EFO53959.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           SK1302]
          Length = 740

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 438/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V+ GD V VK+L  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVQIGDFVDVKVLKIDEKGRVDASMKALLPRPPKP 702


>gi|332076425|gb|EGI86888.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA41301]
          Length = 737

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFIHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|310779081|ref|YP_003967414.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
           DSM 2926]
 gi|309748404|gb|ADO83066.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
           DSM 2926]
          Length = 716

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/701 (43%), Positives = 455/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+   +E+E  GR L L TG+IARQS GAV+  YG+T++L+TV   +  + G DFFPLT
Sbjct: 1   MFEEKKMEMEIGGRTLSLSTGKIARQSCGAVMIQYGDTILLSTVNRSKEGRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V++ E+ YAVGK PGG+ +RE+RP+ +  L +R+IDR IRP+F + +  +  ++  V  +
Sbjct: 61  VDFLEKYYAVGKFPGGFHKREARPSTDATLTARLIDRPIRPMFPEGFNYDVHIVNTVFSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D +++P  + ++ +SAALMLS +PF GPV G  V     +++LNP   E  +  L+L V+
Sbjct: 121 DGDNTPDYLGIIGSSAALMLSDIPFLGPVAGVVVAMKGEEFILNPTPKELAESPLNLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A+++SE+V+L AI+F H+  K + E   + A++  KE       +  +
Sbjct: 181 GTKDAVNMVEAGASEMSEEVMLKAILFAHDNIKKICEFQEEFARLAGKEKFEFVKPEIDE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEG 289
            ++  + +   E L+ +     K  R   ++DL+ ++++ F+ ++             EG
Sbjct: 241 TVQSFIDENGGERLKKAVLAIGKQAREDAVNDLEDELLASFTEKYIQENELEELPGEIEG 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  S + D+  K VR  ++  K R+DGR ++ +RD+ A++G L   HGS++F RG+TQAI
Sbjct: 301 EFKSYYHDLMKKFVREAIVYNKHRVDGRKTDEIRDLYAEIGTLPLPHGSAMFTRGETQAI 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V  TLGT++DEQ VD L+      F +HYNF P + GE   M AP RRE+GHG LA RA+
Sbjct: 361 VTTTLGTKQDEQLVDGLNEEYYKKFYLHYNFPPYSVGEARFMRAPGRRELGHGALAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P T  FPYT+R+VSEITES+GSSS A++CG SLALM AGVP+   VAGIAMGLVK+
Sbjct: 421 SYVMPSTDDFPYTVRVVSEITESNGSSSQASICGGSLALMAAGVPVKSHVAGIAMGLVKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GDD+ +L+DI G EDHLG MDFKVAGT++GITA+QMD+KI GI EN+M +AL+QA   RL
Sbjct: 481 GDDYAVLTDIMGLEDHLGDMDFKVAGTEAGITALQMDIKITGIDENVMRIALKQALDARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+  M   +     +L    PR+  M +P D+I  +IG GGK I+ I+E+TGA ++I+D
Sbjct: 541 QIIGVMKNAIEAP-AELAASAPRIYQMMVPTDKIAALIGPGGKNIKAIIEETGATIDIED 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S+    +E    ++ +     E  +IY+G+VVKV  FGAF+     ++GL+H+
Sbjct: 600 DGKVSIFSNDGETLEKTINLVNNYVKDIEAGEIYQGKVVKVAKFGAFMQILPGKEGLLHV 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S+++ ERVA   DV+  GD + VK++  ++ GK+ LS K +
Sbjct: 660 SEIAHERVANVDDVLSVGDILEVKVIS-NENGKVSLSRKQL 699


>gi|183603864|ref|ZP_02722383.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
 gi|307067208|ref|YP_003876174.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
 gi|183577765|gb|EDT98293.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
 gi|306408745|gb|ADM84172.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
          Length = 737

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  + GR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFVGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELITFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  ++++  E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYANHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|225854123|ref|YP_002735635.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae JJA]
 gi|254782740|sp|C1CCW4|PNP_STRZJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225723734|gb|ACO19587.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae JJA]
          Length = 737

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDLEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  D+V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|183603099|ref|ZP_02710211.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571256|gb|EDT91784.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1087-00]
          Length = 737

 Score =  765 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 440/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 AEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +  ++V+ GD V VK++  D++G+I  SMK +     KP
Sbjct: 662 TNRVENLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKP 702


>gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum
           ferrodiazotrophum]
          Length = 709

 Score =  765 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/699 (46%), Positives = 464/699 (66%), Gaps = 4/699 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
               TVE+   G+ +++ETGR+ARQ+DGA +     TV++AT V  +++K G DF PLTV
Sbjct: 1   MKPVTVEVAVGGKTVRIETGRMARQADGAAVLWVEGTVIIATAVAAKTVKPGTDFLPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQER YA GKIPGG+ +RE +P+E EIL SR++DR +RPLF + +  +TQVI +V+  D
Sbjct: 61  DYQERAYAAGKIPGGFFKREGKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIASVVSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSG 180
                 V+++VAAS AL +S +PF+ P+   +V Y++GQ+V+NP ++ +++ SLDL V+G
Sbjct: 121 RSGLTDVMAVVAASTALTISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSSLDLVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SK 239
           T DA++MVE +A+++SE++ L+AI   H  C+P+I A  +L K   K    +       +
Sbjct: 181 TADAIMMVEGKADEVSEELFLEAIRTAHAACQPIIAAQRELQKKIGKSKRALPQVPVRPE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFED 297
           L E++    +E L     + +K VR ++  +++  +      E       E E  + F +
Sbjct: 241 LMEKIRSGGREPLSGILVVSDKKVREEKTSEIRSNLAKELFPEGFADPMQEKEFSNGFHE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +++R ++LD+ +R DGR +  +R I+ +VG+L RTHGS+LF RG+TQ++ V TLGT 
Sbjct: 301 LERELLRAMVLDRGIRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +DSL G     FM+HYNF   + GEV  M  P RREIGHG LA RA+ PVLP   
Sbjct: 361 DDEQRIDSLEGESHKRFMLHYNFPAFSVGEVKPMRGPGRREIGHGNLAERALIPVLPSKD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY++R+VS+I ES+GS+SMATVCG +LA+MDAG+PI  PVAGIAMGL+K+GD   ILS
Sbjct: 421 DFPYSIRLVSDILESNGSTSMATVCGGTLAMMDAGIPIKAPVAGIAMGLIKEGDRIAILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKV GTD G+TA+QMD+KI GI+  IM  AL+QA+ GR+HI+ +M +
Sbjct: 481 DILGIEDHLGDMDFKVTGTDIGVTAVQMDIKIKGITLEIMKKALEQARVGRIHIMGKMKE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L   R Q+  + PR+  + I  D+IR VIG GGK+IR I E+TGAK+ I+D G + +AS
Sbjct: 541 ALPSVRSQMSPYAPRIMTIQIKQDKIREVIGPGGKMIRSITERTGAKIEIEDSGVIHVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +     + A E+I  I    EV KIY G+V  V ++GAFV       GL H+SQL   RV
Sbjct: 601 ADEEAAKKAIEIIHQIVAEAEVGKIYLGKVKTVAEYGAFVEIMPGTTGLCHVSQLEPRRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K +DVV EGD + VK+L+ D +GKI+LS K      G+
Sbjct: 661 EKVTDVVNEGDEIVVKVLEVDRQGKIRLSRKEAIAEEGE 699


>gi|34763065|ref|ZP_00144038.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887264|gb|EAA24362.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 699

 Score =  765 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/701 (43%), Positives = 448/701 (63%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +++E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMKLELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R   +D L+++++  F           E       
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG+ V+I D
Sbjct: 541 QILELMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I       E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVDKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|237742790|ref|ZP_04573271.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           4_1_13]
 gi|256846116|ref|ZP_05551574.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_36A2]
 gi|229430438|gb|EEO40650.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           4_1_13]
 gi|256719675|gb|EEU33230.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_36A2]
          Length = 699

 Score =  765 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/701 (43%), Positives = 448/701 (63%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            ++  +     E L+ +     K  R   +D L+++++  F           E       
Sbjct: 241 LVKNFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQENYPDVPEEELPEDIIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPVPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI++QTG+ V+I D
Sbjct: 541 QILELMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIDQTGSTVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I       E  ++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLIDGFVREVEYGEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVDKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 703

 Score =  765 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/695 (42%), Positives = 446/695 (64%), Gaps = 9/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V   ++E AGRPL +E G++A+Q++GA L  YG+TVVL T    +  ++G DFFPLTV+Y
Sbjct: 3   VKKYQMEVAGRPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE R T    L +R+IDR IRPLF K ++NE  V+  ++  + +
Sbjct: 63  EEKQYAVGKIPGGFIKREGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P V ++  AS AL +S +PF GPV    V  ++G+ ++NP +++  +  L L V+GT+
Sbjct: 123 NAPDVTAITGASVALSISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAVAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           +A++MVE  AN++ E+ + DAI F H E K +++    + +      + ++      +++
Sbjct: 183 EAIMMVEGGANEVPEETMRDAIFFAHEEIKKIVDFQENIIREVGLSKMQVEIPILDEEIK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + + +        +   P+K  R  Q+D  +K ++ +F+  +    E  I  V ++    
Sbjct: 243 KAVVEFATPLFEEAVKNPDKKTREDQMDSSQKSVLQHFTESYPEE-EKLIADVSDETMKA 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR + L++  R+DGR  + +R +S +VG L R HGS LF RG TQ + V TLG   +EQ
Sbjct: 302 VVRKMALEEGERVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   ++  ++ HYNF P +TGE   M  P RREIGHG LA RA+  V+P   +FPY
Sbjct: 362 RLDGLGIEEKKRYIHHYNFPPYSTGETKPMRGPGRREIGHGALAERALLAVIPSEEEFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSM +VCGS+L+LM AGVPI  PV+GIAMGLVK+G+ F I+SDI G
Sbjct: 422 TIRVVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKAPVSGIAMGLVKEGERFAIMSDIQG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFK+AGT+ G+TA+QMD+KI G++  I+  AL+QA+ GR+ IL +M + + +
Sbjct: 482 IEDALGDMDFKLAGTEKGVTALQMDIKITGVNREIVEAALKQAREGRMFILKKMLEAIDK 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              +L  + P++  M I PD+IR VIG GGK I  IV++TG K++I+DDG++ I ++   
Sbjct: 542 PNEELSPYAPQMIRMQIDPDKIREVIGPGGKTIHKIVDETGCKIDIEDDGSLFIMATDEE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG------ARDGLVHISQLSTE 655
             + AR  + SI    EV K Y G V ++MDFGAFV           ++GLVHISQL+ E
Sbjct: 602 AAKKARFFVESIVAEVEVGKTYMGTVKRIMDFGAFVEIIPGVLGTSGKEGLVHISQLAEE 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV K  DVV  GD + VK+ + D +G++ LS K V
Sbjct: 662 RVNKVRDVVDIGDQILVKVTEIDRQGRVNLSRKAV 696


>gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
 gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
          Length = 713

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/699 (48%), Positives = 471/699 (67%), Gaps = 7/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++ T E ++  + + LETGRIARQ++ +V+   G   VL  VV     + GQ+FFPLT
Sbjct: 1   MFNIITKEFQYGNQQVTLETGRIARQAN-SVVVHMGGVSVLVAVVVKDEAQAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE RP+E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYAAGKIPGGYGKREGRPSEMETLTSRLIDRPIRPLFPESYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179
           D +    + +M+  SAAL +S  PF GP+  A+V +IN +YVLNP  +   Q SLDL V+
Sbjct: 120 DKKQDADIAAMIGTSAALAISSAPFNGPIGAARVGFINDEYVLNPNHEALKQSSLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFS 238
           GT  AVLMVE EA +LSED +L A+++GH + + VI+AI++ AK    +    +      
Sbjct: 180 GTSSAVLMVESEAKELSEDQMLGAVLYGHAQQQVVIDAINEFAKEVGVQKTQFVAPAVNE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSV 294
            L+  +       +  +  I EK  R  ++D++K + +   +    +E  + N  +I  +
Sbjct: 240 ALQTTLQNQFAAAISEAYTISEKASRYTRLDEIKNQAIEALAGDAEAEDYADNVAQIKEL 299

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           FE ++ + VR  +L  K R+DGRD +TVR +  QVG+L  THGS+LF RG+TQA+V  TL
Sbjct: 300 FETLKYRTVRDNILSGKPRIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQALVTTTL 359

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D   +D+L+GT+++ FM+HYNF   + GE  R   P RREIGHGRLARR +  +LP
Sbjct: 360 GNSRDVNMIDTLAGTKQDHFMLHYNFPSYSVGETGRDSGPKRREIGHGRLARRGVQAMLP 419

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            + +FPY +RIVS+ITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F 
Sbjct: 420 DSDRFPYVIRIVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFA 479

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKVAG+ +G+TA+QMD+KI GI+  IM  AL QA  GR+HILN 
Sbjct: 480 VLSDILGDEDHLGDMDFKVAGSANGVTALQMDIKIEGITPEIMEKALHQAHAGRIHILNA 539

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++V+S SR ++    P   ++ I P++IR+VIG GG  IR + E+TGA ++IDD+GT++
Sbjct: 540 MNEVISTSRKEINAHAPNFAVIDIDPEKIRDVIGKGGATIRQLTEETGAVIDIDDNGTIR 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   + A  +AA   I +IT   EV K Y G+V ++++FGAFV+     DGLVHISQ+S 
Sbjct: 600 IFGENKAATKAAIAKIEAITAEVEVGKTYTGKVARIVEFGAFVNVLPNTDGLVHISQISD 659

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            R+   +DV+KEG TV V + D D+RG+IKL+MK VDQ 
Sbjct: 660 ARIENVNDVLKEGQTVNVLVQDIDNRGRIKLTMKGVDQT 698


>gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 712

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/702 (45%), Positives = 466/702 (66%), Gaps = 10/702 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    E+++ G+ LK+ETG +A+Q+ G+VL  Y +TVVL+     +  KD  DFFPLTV
Sbjct: 1   MNKRVFELDFCGKNLKVETGELAKQAGGSVLVRYEDTVVLSAATASKKAKD-IDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+ Y+VGKIPGG+LRRE RP+E+  L SR+IDR+IRPLF++ ++NE QV+  V+  D
Sbjct: 60  TYEEKLYSVGKIPGGFLRREGRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            +S+P + +M  AS +LM+S +PFEGP+ G  V YI+  +V+NP L+E + S + L V+G
Sbjct: 120 QDSAPDMAAMFGASLSLMVSDIPFEGPIAGVTVGYIDETFVINPTLEEQEKSKMHLIVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSK 239
           T+DA+ MVE  A ++SE+++L+A++FGH   K +     ++A+  AKE + +   +  S+
Sbjct: 180 TKDAINMVEAGAEEVSEELMLEAMLFGHEWIKRLCAFQIEIAQEVAKEKMEVTLYEVPSE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEG-----EIVS 293
           + EE+  ++ +DLR +  I EK  R   ID+L++K V +F ++ + + +E       +  
Sbjct: 240 IVEEVEALVGKDLREAVAIHEKLKRYGMIDELEEKAVLHFEAKSYETESEKHKTVKYVKE 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V   + A  VR ++  +K+R DGR  + VR ++ Q+ LL R HGS LF RG+TQ + V T
Sbjct: 300 VTHGMVADEVRRLISIEKIRPDGRGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D Q +D LS      F+ HYNF P + GE  RMGAP RREIGHG L  RA+  V+
Sbjct: 360 LGAMADTQIIDDLSDVDSKRFLHHYNFPPYSVGETGRMGAPGRREIGHGALGERALSYVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V+E+ ES+GSSS A++C  SLALM AGVP+   V+GIAMGLV+ GDD+
Sbjct: 420 PSEEEFPYTIRLVAEVLESNGSSSQASICAGSLALMAAGVPVKAAVSGIAMGLVQYGDDY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDH G MDFKVAGT  GITA+QMD+KI G+SE+I+  AL QAK GR  ++ 
Sbjct: 480 TILTDIQGMEDHFGDMDFKVAGTKKGITALQMDIKIKGLSEDILREALAQAKTGRAEMMA 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGT 592
            M +V+SE R  +GE+ P++  M I PD+IR+VIG GGK+I  I+E     K++I+DDG 
Sbjct: 540 AMDEVISEPRNFVGEYAPKIAQMNIKPDKIRDVIGAGGKIINQIIEDCNDVKIDIEDDGR 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I  +  A I+ A+ MI +I  V  V +IY  +VV++  FGAFV+     D L+H+S++
Sbjct: 600 VVIYHTDQASIDKAKAMIENIVRVAAVGEIYDAKVVRIEKFGAFVNLFQGTDALLHVSKM 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
              RV K  D+VK GD V VK+++ D++G++ +S K +    
Sbjct: 660 DHNRVEKPEDIVKLGDIVKVKVMEIDEKGRVNVSRKALLPKP 701


>gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
 gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
          Length = 703

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/701 (44%), Positives = 453/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E AGR LK+ TG+I+RQS GA++  YG+TVVL+T    +  + G DFFPLT
Sbjct: 5   MFDEKIMELELAGRTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLT 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  LI+R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 65  VDYVEKFYSTGKFPGGFNKREGRPSTNATLIARLIDRPIRPMFPDGFNYDVHIVNTVLSY 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  ++P  + ++ +S ALM+S +PF GPV G  V Y NG+++LNP   E ++  LDL V+
Sbjct: 125 DEVNTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESELDLSVA 184

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+DAV MVE  A +L E+ +L AI+F H+  K + E     AK+  KE I    ++   
Sbjct: 185 GTKDAVNMVEAGAKELDEETMLKAIMFAHDNIKKICEFQEVFAKLYGKENIEFTKEEVLP 244

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEG 289
            +++ +     + L+ +     K  R + +D L++++++ F  E+               
Sbjct: 245 LVKDFIDTNGHKRLQEAVLTTGKKNREEAVDSLEEELLNKFVEENYPDVPEEELPEDVIA 304

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+   +VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 305 EFKTYYHDLMKILVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 364

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+ DEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 365 AITTLGTKADEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 424

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 425 RYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 484

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI+E IM +AL QA   R+
Sbjct: 485 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHEARI 544

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI+EQTGA V+I D
Sbjct: 545 QILEVMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIEQTGATVDITD 603

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   ++I S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 604 DGLVSVFAKDAEVLEKTLKLIDSFVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 663

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 664 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 703


>gi|296329277|ref|ZP_06871778.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153633|gb|EFG94450.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 699

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/701 (43%), Positives = 451/701 (64%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   +E+E  GR LK+ TG+I+RQS GA++  YG+TV+L+T    +  + G DFFPLT
Sbjct: 1   MFDEKIMELELVGRTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ Y+ GK PGG+ +RE RP+ N  L++R+IDR IRP+F   +  +  ++  V+ +
Sbjct: 61  VDYIEKFYSSGKFPGGFNKREGRPSTNATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  + ++ +S ALM+S +PF GPV    V Y NG+++LNP   E ++  LDL V+
Sbjct: 121 DEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESELDLIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++AV MVE  A +L E+ +L AI+F H   K + E   + +K+  KE I  +  +  +
Sbjct: 181 GTKEAVNMVEAGAKELDEETMLKAIMFAHENIKKICEFQEEFSKLYGKENIEFEKPEVLT 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            +++ +     E L+ +     K  R   +D L+++++  F           E       
Sbjct: 241 LVKDFIDTNGYERLQQAVLTTGKKNREDAVDSLEEELMEKFIQKNYPDVPEEELPEDIIL 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E  + + D+  K+VR  +L  K R+DGR +  +R + AQ+ +L   HGS+LF RG+TQ++
Sbjct: 301 EFKTYYHDLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            + TLGT+EDEQ +D L       F +HYNF P + GEV RMG+P RRE+GHG LA RA+
Sbjct: 361 AITTLGTKEDEQLIDDLEKEYYKKFYLHYNFPPYSVGEVGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT SGITA+QMD+KI GI++ IM +AL QA + R+
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITKEIMRIALNQAHQARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S+   +L    PR++ + IP D+I  +IG GGK I+GI+EQTGA V+I D
Sbjct: 541 QILELMNNTISKP-AELKSNVPRIQQITIPKDKIAVLIGPGGKNIKGIIEQTGATVDITD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V + +     +E   +++ S     E N++Y+G+VV +M FGAF+     ++GL+HI
Sbjct: 600 DGLVSVFAKDAETLEKTLKLVDSYVREVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+  GD   V+++   + GKI LS K V
Sbjct: 660 SEISPERVEKVEDVLSVGDVFKVRVISM-EGGKISLSKKKV 699


>gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus
           UQM 2246]
          Length = 749

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/696 (43%), Positives = 439/696 (63%), Gaps = 7/696 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
            VE E+ GR L LETG+ A+Q+ GAVL TYGET VL   V + S   G+DFFPL V Y+E
Sbjct: 7   RVECEFGGRTLVLETGKFAKQAHGAVLVTYGETSVLVAAV-EGSPIPGRDFFPLQVEYRE 65

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           RTYA GK PGG+++RE+RP+  E L SR+IDR  RPLF   Y NE Q+   V+  D E+ 
Sbjct: 66  RTYAAGKFPGGFIKRETRPSTKETLTSRLIDRPSRPLFPANYFNEVQIHCTVISSDREND 125

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             +++++  SAAL +S +PF  P  G ++  +NG+ V+ P + + ++  LDL V+ T+DA
Sbjct: 126 ADMLALIGTSAALHVSHIPFLKPYGGLRLGRVNGELVVLPTVTQMEESDLDLIVAATRDA 185

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEEE 243
           V M+E  A ++ E+ + DAI+  H +C  +I+ I +L         ++  +   + L EE
Sbjct: 186 VCMIEGFAREMPENEMGDAIMEAHKQCAVLIDLIERLRTEAGLGTKVLPPATADNPLLEE 245

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFEDIQA 300
           + Q      R       K  R   +D  K ++   +  E   + ++   ++      ++ 
Sbjct: 246 LHQKYGAQYREKYLTQGKKERNAALDAFKDEIKKVYLPEGEANPAYTPSQVSGALSALRE 305

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++ R + L    R+DGR  + +R + A+V +L RTHG++LF RG+TQA+VV TLGT  DE
Sbjct: 306 RIFREITL-GGTRIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVADE 364

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VD L       F + YNF P + GE   + AP RREIGHG LA R++  V+P  ++FP
Sbjct: 365 QKVDGLQDEYSKKFFLDYNFPPYSVGECKPIRAPGRREIGHGMLAERSLKAVIPPPSRFP 424

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEI ES+GSSSMA+VCG +LALMDAGVPI +PVAGI++GLV + D F +L+DI 
Sbjct: 425 YTIRLVSEILESNGSSSMASVCGGTLALMDAGVPIKRPVAGISVGLVMEKDHFSLLTDIQ 484

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDH G MDFKVAGT  G+T +Q+D+K+ GI+E I+  AL+QAK  RL IL  M   LS
Sbjct: 485 GDEDHYGDMDFKVAGTQKGVTGVQLDIKVDGINEAIVRGALEQAKEARLQILKTMLSALS 544

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++  + PR+  + I P+ I  +IG GGK+IR I E+TGAK++I+DDGTV IASS  
Sbjct: 545 APRKEISRWAPRLIQLKINPEMIGKLIGPGGKMIRAIQEETGAKIDIEDDGTVSIASSDA 604

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +EAAR M+  +T   +V  +Y G+VV + DFGAFV     RDGL H+S+L +  V + 
Sbjct: 605 EGVEAARRMVEGLTAEVKVGAVYDGKVVSMKDFGAFVEIAPGRDGLCHVSELDSGFVQRP 664

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            DVV+ G  + VK++  DD G+++LS K +   + +
Sbjct: 665 EDVVEIGQKIQVKVIGIDDNGRVRLSRKALLAPSDE 700


>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 697

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/694 (46%), Positives = 477/694 (68%), Gaps = 3/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + L+TG IARQ++ +V+ +  +T VL TVV    +K  QDFFPL 
Sbjct: 1   MINSTIYKFQYGKHTIILDTGTIARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLV 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GK PGG+ RRE RP+E+EIL +R+IDR IRPLF K + N+ Q+I  V+  
Sbjct: 61  VNYQERTYAAGKFPGGFFRREGRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + SP +V+++ ASAAL LS +PF GP+  A+V YIN QYVLNP + E   S LDL +S
Sbjct: 121 NPQISPDIVAIIGASAALSLSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLDLVIS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+  +LMVE E++ LSE  +L+AIIFGH + + VI  I+KL +   K   +   K+   
Sbjct: 181 GTESNILMVESESSLLSEKEILNAIIFGHEQQQIVIHNINKLVQEIGKSKFIWKRKELDL 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
            L++ +S + +  L     + ++  R  Q++++K+ ++ +   ++S + N  EI+     
Sbjct: 241 SLQKYLSDLYESRLNCISIVRDRKGRQIQLNNIKQDVIDFSCIKYSNTMNGNEIMYFLNY 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +++R  +L   +R+DGR  + +R+I  ++G+L RTHGS+LF RG+TQA+V VTLGT 
Sbjct: 301 LEVQLLRQYILKNNLRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTE 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L+G + + F+MHYNF P   GE+  +GAP RREIGHGRLA+R +  V+P + 
Sbjct: 361 RNAQNLDELTGDRVDRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDSN 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA++CG+SLALMDAGVPI + VAG+AMGL+K+ ++F++LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEENEFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI  DEDH+G MDFKVAG   GITA+QMD+KI GI+  I+ +AL+++K  RL ILN M +
Sbjct: 481 DIISDEDHIGDMDFKVAGGKQGITALQMDIKINGITYEIIHVALEKSKLARLKILNFMEQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+   R  + EF PR+  + I PD+I++VIG GG VIR + E+T   ++I+DDG +KI S
Sbjct: 541 VIKIPRKNISEFAPRIYNIKINPDKIKDVIGKGGSVIRALTEETNTIIDIEDDGLIKIVS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +  + + A   I+ IT    +  +Y G+V  +++FGAF+     ++GL+HISQ+S +R+
Sbjct: 601 LNAEKAKQAMSRIQEITANIAIGSVYTGKVTHIVEFGAFITIFSGKEGLLHISQISEKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            K SD +K G  V VK+LD D +G+I+LSM+ ++
Sbjct: 661 GKVSDYLKLGQEVLVKVLDIDRQGRIRLSMRGIN 694


>gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 741

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/698 (44%), Positives = 457/698 (65%), Gaps = 5/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    E+E  GR L   TG +A+Q++GAV A YG+T VL T   +   ++  DFFPL 
Sbjct: 1   MNEDKCFEVEIGGRALVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLI 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+ER YA GKIPGG+++RE +P+E+ IL +R++DRSIR LF +  KN+  V+  ++  
Sbjct: 61  VDYEERFYAAGKIPGGFIKREGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D  + P V+++ AASAAL +S +P++GPV   +V YI+G  V+NP  ++ Q S LDL V+
Sbjct: 121 DQTNPPDVLAINAASAALAISDIPWDGPVGAVRVGYIDGSLVINPMEEDMQNSTLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           G ++ + MVE  A ++ E+V++DA+     E + +++   K+ +   K    I   ++  
Sbjct: 181 GHKEGITMVEGGAGEVPEEVLVDALELAQQEIRRLVDFQLKMREEVGKPKCEIPAPQEVP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++E +      ++  +  I  K  R   I  +K+K+   F   +    EG + +     
Sbjct: 241 EIDECIKTDHYGEIYEAVKIHAKKERSDAIKAIKEKVWEKFKDTYPEQ-EGYVSNAVTKY 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-R 357
             K +R+++LD+ +R DGR  + +R IS +V LL R HGS++F RG+TQA+VV TLG   
Sbjct: 300 VKKAMRSLILDEGLRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQALVVTTLGMFG 359

Query: 358 EDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           EDEQ +D L   +    FM+HYNF P + GEV  M  P RREIGHG LA RA+ P++P  
Sbjct: 360 EDEQILDGLKLDEPPKRFMLHYNFPPFSVGEVRPMRGPGRREIGHGALAERAVKPLIPDE 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           +QFPY +R+VS+I ES+GSSSMA+VCG+S++LMDAGVPI+K VAGIAMGL+K+GD + IL
Sbjct: 420 SQFPYIIRVVSDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAMGLIKEGDKYAIL 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  G+TA+QMD K GGI+  I+V AL QAKRGRL IL+ M 
Sbjct: 480 TDIQGLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILVQALDQAKRGRLQILDIME 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R +L ++ PR+  M I PD+IR+VIG GGK IR IV++TG K++I DDG V IA
Sbjct: 540 KAIGRPRGELSQYAPRIYTMNIDPDKIRDVIGPGGKTIRSIVQKTGVKIDIADDGVVHIA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +SS +    A  +I+S+T   E  ++Y G+V ++M+FGAF+     ++GL+HIS++S+  
Sbjct: 600 ASSESAANEAMSIIKSLTKDVEPGEVYIGKVTRLMNFGAFIELLPGKEGLLHISEVSSSH 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           V K  D+ K GD V V + + D+ G++ LS K + +N 
Sbjct: 660 VPKIEDIFKVGDRVLVVVKEIDELGRVNLSRKRIMENP 697


>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
           floridanus]
 gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Candidatus Blochmannia floridanus]
          Length = 697

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/695 (46%), Positives = 467/695 (67%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + L TG IARQ++ AV+ + G+T VL TVV     K  Q FFPL 
Sbjct: 1   MLNSIVHKFQYGQHTVVLNTGAIARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLV 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQERTYA GK PGG+ RRE RP+E+EIL SR+IDR IRPLF K + N+ Q+I  V+  
Sbjct: 61  VHYQERTYAAGKFPGGFFRREGRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + +  P +V+M+  SAAL LS +PF GP+  A+V YI  QY+LNP   E   S LDL V+
Sbjct: 121 NPQIHPDIVAMIGVSAALSLSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT   +LMVE  A  LSE  +L+AI+FGH + + VI+ I++L K   K       KD   
Sbjct: 181 GTDSNILMVESAACVLSEQEMLNAIVFGHEQQQTVIQNINQLVKKAGKVKYDWKLKDMDI 240

Query: 239 KLEEEMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFE 296
            L E +S + +  + VSC +   K  R +Q++++K  ++       + + +  E++S   
Sbjct: 241 LLSEYLSNLYRSRVNVSCLVGVNKKDRQEQLNNIKHDIIDITLREYNENIDVNEVMSFLN 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++ K++R+ +L   VR DGR  + +R+I    G+L RTHGS+LF RGDTQA+V  TLGT
Sbjct: 301 NLEIKLLRSSILRDNVRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L+G + + F++HYNF P  TGE+  +GAP RREIGHGRLA+R +  V+P +
Sbjct: 361 ERDAQNLDELTGDRVDRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPNS 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSE+TES+GSSSMA++CG+SLALMDAGVPI + VAG+AMGL+K+  +FIIL
Sbjct: 421 NEFPYTVRVVSEVTESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKENSNFIIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI  DEDH+G MDFKV+GT +GITA+QMD+KI GI+ +I+ ++ ++A+   L IL+ M 
Sbjct: 481 SDIISDEDHIGDMDFKVSGTRTGITALQMDIKIKGITYDIIEVSFKKARCALLRILDIMD 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +V+   R  + EF PR+  + I PD+I++VIG GG VIR + E+T   ++I+DDG +K+ 
Sbjct: 541 QVIKIPRKDISEFAPRIYSIKINPDKIKDVIGKGGSVIRALTEKTSTIIDIEDDGVIKVI 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S +  + + A + I+ IT    +  IY G+V  ++DFGAFV     ++GLVHISQ++ +R
Sbjct: 601 SLNAEKAKQAVDRIQEITANIAIGSIYTGRVTHIVDFGAFVTLFAGKEGLVHISQITEKR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V + SD +K G  V VK+L+ D +G+++LSM+ ++
Sbjct: 661 VNRVSDYLKLGQEVLVKVLEIDRQGRMRLSMRGIN 695


>gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 777

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/696 (43%), Positives = 446/696 (64%), Gaps = 9/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           VH+V +E AGRPL +E GR+A+ ++GAVL  YG+TV+LA V      +DG DFFPLTV+Y
Sbjct: 6   VHSVTVELAGRPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPG + +RE RPTE  IL SR+ DR +RPLF K Y N+ QV I  +  D  
Sbjct: 66  EEKMYAAGKIPGSFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQV 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P  ++++ ASAAL++S +PF  PV   Q+ +I+G + +NP +   + S LDL V+GT 
Sbjct: 126 NDPGPLAIIGASAALVISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVVAGTS 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           +AV+MVE  A +L+E  +L+A+  GH   + VI+A  +LA+ C K      +    + L+
Sbjct: 186 EAVMMVEASAYELTEAEMLEAVKRGHEAMQAVIQAQLELAEKCGKPKKEFVAPVVDTSLQ 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF----SSEHSSWNEGEIVSVFED 297
           +E+   +      +    +K  R    D L+  ++  F    + E  +     +   ++ 
Sbjct: 246 DEIKAWMGNRFLQALNNSDKAAREAATDSLRTDVLEQFSAGVAEEELAARVKAVTKNYDA 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +    VR  +L++ +R+DGR    +R I+  VG+L R HGS LF RG TQ + V TLG+ 
Sbjct: 306 LVKDEVRASILEQGIRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSP 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D L       +M HYNF   +TGE      P RR+IGHG+LA RA+ PVLP+  
Sbjct: 366 GDEQRLDDLGIETTRHYMHHYNFPAFSTGEARPSRGPRRRDIGHGKLAERALVPVLPEKD 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFII 475
           +FPYT+R+VSE+  S+GSSSMA+VCGSSLALMDAGVPI  PVAG+AMGL+  K+   F +
Sbjct: 426 KFPYTMRLVSEVLASNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKEAGQFSV 485

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT +GITA+QMD+K  GI+  IM  A +QA++GR+ IL++M
Sbjct: 486 LTDIQGLEDALGDMDFKVAGTTAGITALQMDIKTTGITYEIMQQAFEQARQGRVFILDKM 545

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +++++ +R  + +F PR+  + I P +I  +IG GGK IR I+EQTGA+++++DDG V +
Sbjct: 546 NEIINTARNDISQFAPRIITLQIDPSKIGALIGPGGKTIRSIIEQTGAQIDVEDDGRVFV 605

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +        A+ +I  +T   +V +I+ G+VV++M +GAFV+    +DG+VH+S+L  +
Sbjct: 606 TTPDADGARMAQSLIEGLTREAKVGEIFTGKVVRIMPYGAFVNVLPGKDGMVHVSELDEK 665

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           RV    DVVK GD + V ++D +   GK+ LS + +
Sbjct: 666 RVENVEDVVKIGDELTVMVIDVEPGTGKLSLSRRAI 701


>gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
 gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
          Length = 722

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/694 (46%), Positives = 463/694 (66%), Gaps = 7/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + +V +E+ G+ ++++TG++ARQ+  AV+   G+ V+L T V +   K+G DFFPLTVNY
Sbjct: 1   MESVSVEFGGKIIEMQTGQVARQASAAVVVRQGDNVILVTAVSNNEPKEGIDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ Y+ G+IPGG+ +RE  P+++E LISR+IDR +RPLF   Y NETQVI  VM  D E
Sbjct: 61  IEKRYSSGRIPGGFKKREGMPSDDETLISRLIDRPLRPLFPDGYFNETQVIATVMSSDGE 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           +   V++M  A+ AL +S +PF GP+   ++  I+GQ+VLNP   + +Q  +D+ ++ T+
Sbjct: 121 TPADVLAMYGAATALHISDVPFNGPLGACRIGRIDGQFVLNPTYAQIEQSDMDISLAATR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LM+E  A ++S+  +LDA+ FG  E   +++A  +L             +    ++ 
Sbjct: 181 DAILMIEAGAKEVSDQDILDAVAFGQREMGRLLDAQEQLRTQAGTPKRAFTPQLVRDEVR 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSVFED 297
             + +     LR +     K      ID  KK +  +F+     E  +  + E +  F D
Sbjct: 241 GAVREQFAGRLRDALAAGGKMEVYSAIDQTKKDLQEHFAAVLGEEEFAAQKKEYMRAFGD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  ++R  +LD+  R+DGR    VR IS     L RTHGS LF RG+TQAIVV TLGT 
Sbjct: 301 LERDIMRGRILDEGKRVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGTV 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ+V++L G +R+++M HYNF P   GE   + +P RREIGHG LA+RAI  VLPQ  
Sbjct: 361 SDEQFVENLEGERRSNYMFHYNFPPYCVGEAGFLRSPGRREIGHGALAKRAIEAVLPQGE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+RIVSEITES+GSSSMA+VCG+SLALMDAGVPI   V+GIAMGL+ +GD F +L+
Sbjct: 421 DFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  GIT++QMD+K+ GI+  IM  A++QA  GR+HIL+ M++
Sbjct: 481 DILGIEDHLGDMDFKVAGTSRGITSLQMDIKVEGITLEIMKAAIEQANGGRMHILDRMNE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L   R +L    PR+  + + PD+IR++IG GGKVIRGIVEQTGAK++IDDDG   +AS
Sbjct: 541 ALDTHRPELNPHAPRIVTIYVKPDKIRDIIGTGGKVIRGIVEQTGAKIDIDDDGRCLVAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++   ++ A  +I+ I + PE+ K YKG+V KV +FGAFV F   +DGL+HISQ+  +RV
Sbjct: 601 ANKESLDMAVAIIQGILEEPEIGKTYKGKVKKVAEFGAFVEFLPNQDGLLHISQIDHKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            + SDV++EGD + V+L++ D + GK KLS K +
Sbjct: 661 ERVSDVLQEGDELEVQLIEVDSKTGKYKLSRKAL 694


>gi|262363252|gb|ACY59973.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004]
          Length = 664

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/649 (49%), Positives = 447/649 (68%), Gaps = 2/649 (0%)

Query: 43  TVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL 102
           TVV  +  K GQ FFPLTVNYQERTYA G+IPG + RRE RP+E E L SR+IDR IRPL
Sbjct: 2   TVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPL 61

Query: 103 FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV 162
           F   + NE QVI  V+  + + +P +V+++ ASAAL LSG+PF GP+  A+V +IN QYV
Sbjct: 62  FPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYV 121

Query: 163 LNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           LNP  DE  +  LDL V+GT  AVLMVE EA+ LSE+ +L A++FGH + + VIE I+ L
Sbjct: 122 LNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINAL 181

Query: 222 AKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
                K      ++  ++ L   ++++ +  L  +  I EK  R  Q+D +K  +     
Sbjct: 182 VAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALL 241

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
           ++  + +  EI  +   ++  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+L
Sbjct: 242 AQDDTLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSAL 301

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQA+V  TLGT  D Q +D L G + + F++HYNF P   GE   +G+P RREIG
Sbjct: 302 FTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIG 361

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HGRLA+R +  V+P  ++FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VA
Sbjct: 362 HGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 421

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+  G+TA+QMD+KI GI+  IM +A
Sbjct: 422 GIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVA 481

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  RLHIL  M + +S  R  + EF PR+  M I P++I++VIG GG VIR + ++
Sbjct: 482 LNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDE 541

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           TG  + I+DDGT+KIA++   + + A   I  IT   EV +IY G+V +++DFGAFV   
Sbjct: 542 TGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIG 601

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           G ++GLVHISQ++ +RV K +D ++ G  V VK+++ D +G+I+LS+K 
Sbjct: 602 GGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSIKE 650



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T      R  +       +  D F L  +Y 
Sbjct: 284 RGLDVRTGILPR-THGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLL--HYN 340

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDL 122
              Y VG+           P   EI   R+  R +  +      +    +V+  + + + 
Sbjct: 341 FPPYCVGETGMV-----GSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEITESNG 395

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L ++   G +D  
Sbjct: 396 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFK 453

Query: 178 VSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNE 210
           V+G++D V  ++++     ++ +++  A+      
Sbjct: 454 VAGSRDGVTALQMDIKIEGITREIMQVALNQAKGA 488


>gi|322374786|ref|ZP_08049300.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
 gi|321280286|gb|EFX57325.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
          Length = 737

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/701 (40%), Positives = 437/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +  +AGR L +ETG++A+Q++G+V+  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF+GP+ G QV Y++GQ ++NP  ++ + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
            A+ MVE  A +LSE+++L+A++ GH   K +I    ++     KE   ++     ++L+
Sbjct: 182 HAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E
Sbjct: 242 TEIIAAYNSDLQKAVQVEEKLAREVATQAVKDQVTAVYQEKYADHEEFDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A V  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG+++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +T  K++ID++G V I 
Sbjct: 542 ETIPEVRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETAVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                D+V  GD V VK++  D++G++  SMK +     KP
Sbjct: 662 TNNVEDLVAIGDEVDVKVIKIDEKGRVDASMKALLPRPPKP 702


>gi|219849396|ref|YP_002463829.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aggregans
           DSM 9485]
 gi|257096672|sp|B8G3Z1|PNP_CHLAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219543655|gb|ACL25393.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aggregans
           DSM 9485]
          Length = 755

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/695 (46%), Positives = 456/695 (65%), Gaps = 8/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           ++TV  E AGR L LE GR A Q+DGAV+A YG+T++LATVV  +  ++G DFFPLTV+Y
Sbjct: 6   IYTVSAEIAGRTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIP  + +RE RPT   ILISR+ DR +RPLF K + NE QVII     D+E
Sbjct: 66  EEKMYAVGKIPANFFKREGRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDME 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQ 182
           + P  ++++AASAAL +S +PF GPV   Q+ +++G+ V+NP++ + ++  LDL V+GT+
Sbjct: 126 NDPGPLAIIAASAALAISDIPFAGPVGAVQMGHLDGKLVVNPKMGEIEKSRLDLVVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DAVLMVE  A +LSED +L A+I GH  CK + E   +L ++C K           + LE
Sbjct: 186 DAVLMVEAGAYELSEDEMLQAVIEGHAVCKQICELQEQLVQLCGKPKRPFTPPVVDTSLE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSVFED 297
           E +S  + + LR +   P K  R  Q + LK +++++F+++           E+   FE 
Sbjct: 246 EAISAWMGDRLRKAVRSPVKQEREAQTEALKAEVIAHFTADEPEEEIPNRTKEVSKAFEK 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +    VR  +LD+ +R+DGR  + +R IS +VG++ R HGS+LF RG TQ + + TLG+ 
Sbjct: 306 LLKDEVRNAILDEGIRVDGRALDEIRPISIEVGVVPRVHGSALFTRGQTQVLTIATLGSP 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VD L       ++ HYNF P +TGE+ R+G P RR+IGHG LA R+++ VLP   
Sbjct: 366 GDEQKVDDLGIETTKRYIHHYNFPPFSTGEIRRLGTPRRRDIGHGALAERSLYAVLPSEE 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIIL 476
           +FPYT+R+VSE+  S+GSSSMA+VCGSSL+LMDAGVPI  PVAG+AMGL+  +   + +L
Sbjct: 426 EFPYTIRLVSEVLSSNGSSSMASVCGSSLSLMDAGVPIKAPVAGVAMGLITGEDGRWRVL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT +G+T +QMD+K  GI+  IM  A  QA+ GRL IL +M+
Sbjct: 486 TDIQGIEDALGDMDFKVAGTANGVTGLQMDIKTTGITYEIMRQAFAQARAGRLFILEKMN 545

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+S  R +L  + PR+  + IP D+I  +IG GGK IR I + TGA+++I+DDG V I 
Sbjct: 546 AVISAPRPELSIYAPRIMTIQIPVDKIGALIGPGGKTIRNICDTTGAQIDIEDDGRVFIT 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +      + A  MI  +T   +V  I+ G+VV +  FGAFV+    +DG+VH+S+L  +R
Sbjct: 606 APDGEAAKKAISMIEGLTREAKVGDIFLGKVVSIKPFGAFVNILPGKDGMVHVSELDEKR 665

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           V    DVV  GD + V ++D D + GKI LS + V
Sbjct: 666 VENVEDVVSLGDEINVMVIDIDRNTGKISLSRRAV 700


>gi|309389238|gb|ADO77118.1| polyribonucleotide nucleotidyltransferase [Halanaerobium praevalens
           DSM 2228]
          Length = 696

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/692 (43%), Positives = 462/692 (66%), Gaps = 3/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +    I++AG     +TG++A+Q++G+V+   G++ VL T V D   + G ++FPL VNY
Sbjct: 1   MKEWTIDYAGDQFNFQTGKLAKQANGSVVVRCGDSQVLVTAVMD-EPRPGMNYFPLMVNY 59

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA+G+IPG  +RRE RP +   L +R+IDRSIRPLF + ++++ Q++  ++  D +
Sbjct: 60  EERVYAIGQIPGSVMRREGRPRDEATLAARVIDRSIRPLFPEGFRHDVQIVATILSVDDD 119

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P V+++  ASAAL LS +PF GP+ G +V  ++ Q ++NP  +E +   LDL V+G++
Sbjct: 120 HDPEVLALNGASAALTLSDIPFAGPIGGVKVALVDEQIIINPNEEERENSDLDLVVAGSK 179

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA++MVE  AN++SE  VL+A+   H E K +I    ++ +   ++    +S    S+++
Sbjct: 180 DAIMMVEASANEVSEATVLEAMKVAHAEIKKIISLQEEMRQEAGEDKFHFESPTVDSEIQ 239

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++ +++   L+ +  I EK  R  +ID+LK ++ +  + +  S  + +I   FE +  K
Sbjct: 240 SKVDEILGNKLKEAIQIQEKQARSDKIDELKAELKATINPDEESELDSQIGMAFEKMLKK 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            V++++++  +R DGRD + +R I A+V  + R HGS +F RG+TQA+ V+TLG+  DEQ
Sbjct: 300 SVKSLVVEDGIRPDGRDYDEIRPIWAEVDFVPRAHGSGVFTRGETQALSVLTLGSARDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +  L   +   +M HYNF     GE S M +P RREIGHG L  +A+ PV+P   +FPY
Sbjct: 360 TLFGLGENETKRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLGEKALLPVIPSEEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVSE+ ES+GSSS A++CGSSLALM AGVPI  PVAGIAMGL+K  DD +ILSDI G
Sbjct: 420 TIRIVSEVLESNGSSSQASICGSSLALMAAGVPIKAPVAGIAMGLMKKDDDVVILSDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAGT++GITA+QMD+K+ G+S +I+  AL++AK+GR+HI+ +M  V+ E
Sbjct: 480 FEDFNGDMDFKVAGTEAGITALQMDIKLKGLSYDILEEALEKAKKGRMHIMGKMLDVIPE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           +R +L E  P +  M I P++IR VIG GGK+I  I+++TGA ++I+DDG VKI +    
Sbjct: 540 ARPELSENAPAIITMNIDPEKIRFVIGPGGKMINKIIDETGASIDIEDDGLVKIMTDDQE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A+EMI  +T+  EV KIY+G+V ++M+FGAFV     ++GLVHIS+L+   V +  
Sbjct: 600 GGQQAQEMIARLTEEVEVGKIYQGKVKRIMNFGAFVEILPNKEGLVHISKLADRHVKEVG 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D+V  GD + VK+++ D++ +I LS+K   + 
Sbjct: 660 DIVSVGDEIPVKVIEIDNQDRINLSLKDAKKE 691


>gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
 gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
          Length = 735

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/702 (43%), Positives = 445/702 (63%), Gaps = 11/702 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                +++ GR + +ETG IA+Q+ G+VL  YG+TVVL+     +  K+G DFFPLTV++
Sbjct: 14  KQEFRLDFCGRGITVETGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLTVSF 73

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D +
Sbjct: 74  EEKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQD 133

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            S  + +M  AS AL +S +PF GP+ G  V  ING+YV+NP   + ++  + L V+GT+
Sbjct: 134 CSTEMAAMFGASLALCVSDIPFNGPIAGVIVGRINGEYVINPTPAQMEESDIHLTVAGTK 193

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
            AV MVE  A +++E+ +L AI+FGH   K ++    ++A    KE + +        ++
Sbjct: 194 YAVNMVEAGAKEVNEEAMLGAIMFGHEHIKQLVAFQEEIAAAVGKEKMEVKLYTVDEAID 253

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVF 295
            E+ +  ++ +R +  I +K  R  +ID+L +  V+ F ++  +          ++  + 
Sbjct: 254 TEVRKDYEKAIREAVSIEKKLERYGKIDELTETAVAQFEAKEYASEADKNKAIKQVKEIC 313

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+A  VR ++++ KVR DGR  + +R + +QV LL R HGS++F RG+TQ + V TLG
Sbjct: 314 HGIEADEVRRLIIEDKVRPDGRKIDEIRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLG 373

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D ++  +   FM HYNF P + GE  RMG+P RREIGHG L  RA+  VLP 
Sbjct: 374 AMNDNQIIDDVTEVESKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALAQVLPS 433

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDF 473
             +FPYT+R V+E+ ES+GSSS A++C  +++LM AGVPI  PVAGIAMGL+ D    ++
Sbjct: 434 VEEFPYTIRTVAEVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDESSSNY 493

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDH G MDFKVAGT  GITA+QMD+K+ GI+E+I   AL QAK  R  IL 
Sbjct: 494 TVLTDIQGMEDHFGDMDFKVAGTSEGITALQMDIKVTGITEDIFREALAQAKVARGQILE 553

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGT 592
            M   +SE R  +G++ P++E   I P++IR VIG  GK+I  I+E+    K++I+DDG 
Sbjct: 554 NMLAAISEPRADVGKYAPKLEQFYIDPEKIREVIGPNGKMINKIIEECDDVKIDIEDDGH 613

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I       I  A +MIR I  V EV  IY   VV++  FGAFV+     DGL+HIS++
Sbjct: 614 VIIYHMDRTAINKAADMIRGIVKVAEVGDIYDATVVRIEKFGAFVNLFPGTDGLLHISKI 673

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           S ERV K  DV+K GDT+ VK+++ DDRG++ +S K +    
Sbjct: 674 SHERVEKVEDVLKIGDTIKVKVMEIDDRGRVNVSAKALLPRP 715


>gi|146321779|ref|YP_001201490.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           98HAH33]
 gi|145692585|gb|ABP93090.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus suis 98HAH33]
          Length = 791

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/698 (40%), Positives = 438/698 (62%), Gaps = 8/698 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E  +AG+ L +ETG++A+Q++GAV+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 55  KQVFETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 113

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 114 EEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPD 173

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y+NG+ ++NP   + + SL +L V+G +
Sbjct: 174 ASAPMAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLELTVAGNK 233

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSE+V+L+A++ GH   + +++  +++     KE   ++  +   +L+
Sbjct: 234 DAINMVESGAKELSEEVMLEALLKGHAAIQELLDFQNQIVAAVGKEKADVELLQVDPELQ 293

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+     +DL+ +  + EK  R    + +++ +++ +  +++   E      ++  + E
Sbjct: 294 AEIVAAYNDDLKKAVQVEEKLAREDATNAVRETVIATYEEKYAEHEEFDRIMRDVHEILE 353

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL  
Sbjct: 354 LMEHTEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAP 413

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  F+ HYNF   + G   R GAP RREIGHG L  RA+  VLP  
Sbjct: 414 MGETQIIDGLDDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSL 473

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++   +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 474 EDFPYAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 533

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 534 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIE 593

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R  L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I 
Sbjct: 594 ATIPEVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIF 653

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S   A IE  +E+I  +    +V+++++ +VV++  FGAFV+     D LVH+S+++  R
Sbjct: 654 SPDRAAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTR 713

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           V K  D+V+ GD V VK++  DD+G+I  SMK +    
Sbjct: 714 VNKPEDLVEVGDVVDVKVIKIDDKGRIDASMKALLPKP 751


>gi|326202154|ref|ZP_08192024.1| polyribonucleotide nucleotidyltransferase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987949|gb|EGD48775.1| polyribonucleotide nucleotidyltransferase [Clostridium
           papyrosolvens DSM 2782]
          Length = 706

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/702 (40%), Positives = 438/702 (62%), Gaps = 8/702 (1%)

Query: 1   MFDV-HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M ++  T  +E AGR L +ETG++A+ ++G+ L  YG+TV++++     S +DG DFFPL
Sbjct: 1   MSNMSKTFSMELAGRTLTVETGKLAQLANGSALIRYGDTVIMSSATASASPRDGIDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+Y+ER YAVGKIPGG+++RE +P+E  IL SR+IDR IRPLF K  +N+  V+  VM 
Sbjct: 61  SVDYEERLYAVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + ++SP + +M+ AS A+ +S +PF GP+ G  +  ++G+ V+NP  ++  +  + + +
Sbjct: 121 VEQDNSPEIAAMIGASVAISISDIPFNGPIGGVVLGLVDGEVVVNPNEEQRAKSKMYVTL 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT++ + M+E  A+ + +DV+LDAI  GH   K + + I+ + K   K     +S D  
Sbjct: 181 AGTKEKITMIEAGADIVDDDVMLDAIKKGHEVIKQICDFINGIVKEIGKPKFTYESADVP 240

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L   +     + +R++    +K  R  ++ +L ++  +  + ++    E +I      
Sbjct: 241 ADLFAAVKAFAYDKMRIAVLATDKQDRDAKVSELTEETQAALAEQYPEM-ENKIKDAIYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ KVVR  +L +  R+DGR  + +R +SA+VG+L RTHGS LF RG TQ +  +TLG  
Sbjct: 300 LEKKVVREYILKEGKRVDGRSLDEIRPLSAEVGILPRTHGSGLFQRGQTQVLTTITLGAM 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D +   +   +M HYNF   + GE      P RREIGHG LA R++ PV+P   
Sbjct: 360 GDVQKMDGIDTEETKRYMHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTEI 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---DDFI 474
           +FPY  R+VSE+  S+GS+S  +VCGS+LALMDAGVPI  PVAGI+ GLV D    D+F+
Sbjct: 420 EFPYAFRLVSEVLMSNGSTSQGSVCGSTLALMDAGVPIKAPVAGISAGLVIDEENPDNFV 479

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
              DI G ED  G MDFKVAGT  GITA+QMD+K+ G++  I+  A +  K+GRL I+N+
Sbjct: 480 TFMDIQGIEDFFGDMDFKVAGTTEGITAIQMDIKVDGLNYEIIRQAFELTKKGRLQIIND 539

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            + K + + R +L E+ P++    I P++IR+VIG GGK+I  I+ +TG K++I++DG V
Sbjct: 540 VILKAIPQPRKELSEYAPKIITTNIDPEKIRDVIGPGGKMINKIIAETGVKIDIEEDGRV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I +   A  + A  +I+ I    E  ++Y G+VV++  FGAFV     +DGLVHIS+L 
Sbjct: 600 YILTPDSAAAQKALRIIQGIAKDIEPGEVYLGKVVRITTFGAFVEILPGKDGLVHISKLD 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +RV K  DVV  GD + VK+ + D +G+I LS K      G
Sbjct: 660 KKRVEKVEDVVNIGDEILVKVTEIDKQGRINLSRKDAMAEEG 701


>gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
 gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
          Length = 696

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/692 (41%), Positives = 465/692 (67%), Gaps = 3/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +    +E+AG    +ETG++A+Q++G+V+   G++ VL T   D   + G ++FPL VNY
Sbjct: 1   MKEWTLEYAGSDFHIETGKLAKQANGSVMVRSGDSQVLVTATMD-EPRPGMNYFPLMVNY 59

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA+GKIPGG LRRE RP +   L +R+IDRSIRPLF   Y+ + QV+  ++  D +
Sbjct: 60  EERVYAIGKIPGGVLRREGRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDD 119

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P ++++  AS AL +S +PF+GP+ G +V  ++G+ ++NP  +E +   LDL V+G++
Sbjct: 120 HDPEMLALNGASIALTISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSELDLVVAGSK 179

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLE 241
           DA++MVE  AN++ E V+L+A+   H E + +I+    + +   KE  + I+     +L 
Sbjct: 180 DAIMMVEASANEVEEAVILEAMDLAHQEIQKMIKIQKTIREEAGKEKEVFIEPTVDDELA 239

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E++ +++ + L+ +  I +K  R ++I  LK ++    + +     + ++   FE++  K
Sbjct: 240 EKVEELLGDRLKEAIQIQKKQARGEKIASLKAELKENLNPDEDEDIDSQLNLAFENMIKK 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            V+++++D  +R DGR+ + +R I A+VG++ R+HGS +F RG+TQA+ V+TLG   DEQ
Sbjct: 300 SVKSLIIDDGIRPDGREHDEIRPIWAEVGVVPRSHGSGVFTRGETQALSVLTLGASSDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +  L   +   +M HYNF     GE S M +P RREIGHG L  +A+ PV+P+   FPY
Sbjct: 360 ILFGLGEKETKRYMHHYNFPSFCVGETSPMRSPGRREIGHGTLGEKALLPVIPEKDDFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+RIVSE+ ES+GSSS A++CGS+L+LMDAGVPI  PV+GIAMGL+K  D+ ++LSDI G
Sbjct: 420 TIRIVSEVLESNGSSSQASICGSTLSLMDAGVPIKAPVSGIAMGLMKKDDEIVVLSDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED  G MDFKVAGT++G+TA+QMDMK+ G+S++++  AL +AK+GR+HI+ +M +V++E
Sbjct: 480 FEDFHGDMDFKVAGTENGVTALQMDMKLKGLSKDVLEEALNKAKKGRMHIMEKMLEVIAE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L +  P +  M I P++IR VIG GGK I  I+++TGA+++IDDDGTV I +    
Sbjct: 540 PRPELSKNAPALISMKINPEKIRFVIGPGGKTINEIIDKTGAQIDIDDDGTVMILTDDQE 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A++M+ ++T   EV +IY+G V ++M+FGAFV     ++GLVHIS+++   + + S
Sbjct: 600 SGKEAKKMVENLTKEVEVGEIYQGTVKRIMNFGAFVEILPNKEGLVHISKIADRHIKEVS 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           DV+  GD + VK+++ D++ +I LS+K   + 
Sbjct: 660 DVLSVGDEIPVKVIEIDNQDRINLSLKAAKKE 691


>gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium
           violaceum ATCC 12472]
 gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium
           violaceum ATCC 12472]
          Length = 722

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/702 (48%), Positives = 478/702 (68%), Gaps = 10/702 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  T   ++  + + LETG IARQ+ G+V+ +  +TVV+ +VV  +++K GQDFFPLTV
Sbjct: 10  FNKITKTFQFGRQTVTLETGEIARQASGSVVVSVDDTVVMVSVVGGKNVKPGQDFFPLTV 69

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y ERTYA GKIPGG+ +RE + +E E+L SR+IDR IRPLF + + ++ Q++  V+  +
Sbjct: 70  DYLERTYAAGKIPGGFFKREGKQSEKEVLTSRLIDRPIRPLFPEGFYHDVQIVATVLSLN 129

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            E    + +M+ ASAAL +SGLPF GP+  A+V Y NG+Y+LNP   E Q S +DL V+G
Sbjct: 130 PEVDSDIPAMIGASAALAISGLPFAGPIGAARVGYANGEYILNPTKTELQTSQMDLVVAG 189

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID---SKDF 237
           T  AVLMVE EA +L E V+L A++FGH + +  I+AI++LA      P++ D       
Sbjct: 190 TSRAVLMVESEAKELPEAVMLGAVVFGHEQMQAAIKAINELADEV--NPVMFDWAAPAKD 247

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFE 296
             L  ++  +  E L  +  + +K  R   I++    + +   +E +      EI  +F+
Sbjct: 248 EALIAQIRGIAGEKLAEAFRLRQKQARTVAINEAWDAVKAGLINEETDTLKANEIKGIFK 307

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A++VR  +L  + R+DGRD+ TVR IS +  +L RTHGS+LF RG+TQA+VV TLGT
Sbjct: 308 SLEAEIVRGQILAGEARIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLGT 367

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ++DEQ +D+L+G     FM+HYNF P +TGE  RMG P RREIGHGRLA+RA+  VLP  
Sbjct: 368 KQDEQIIDALAGEYTERFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALVAVLPPE 427

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +F Y++R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L
Sbjct: 428 DEFGYSMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAVL 487

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT +G+TA+QMD+KI GI++ IM +AL+QAK GRLHIL  M 
Sbjct: 488 TDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITKEIMQVALEQAKEGRLHILGLMK 547

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +     +L    PR+ +M I P++IR VIG GG+ IR I + TG ++NI++DGT+ IA
Sbjct: 548 EAVDGP-QELSAHAPRLYVMKINPEKIREVIGKGGETIRSITKDTGCEINIEEDGTITIA 606

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLST 654
           S S    EAA++ I  IT   EV K+Y+G VVK++D   GA V     +DGLVHISQ++ 
Sbjct: 607 SVSSEGAEAAKKRIEEITVEVEVGKVYEGTVVKILDNNVGAIVSILPGKDGLVHISQIAN 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           ER+   SD +KEG  V VK ++ DDRG+I+LS+K + +   K
Sbjct: 667 ERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEEEAK 708


>gi|225867825|ref|YP_002743773.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. zooepidemicus]
 gi|259534159|sp|C0MFB1|PNP_STRS7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225701101|emb|CAW97943.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 714

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP   + + SL +L V+GT+
Sbjct: 122 ASAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+ MVE  A +L E ++L+A++ GH   + +I    ++     KE   ++    +  L+
Sbjct: 182 DAINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+ +    DL+ +  + EK  R    + +K+++++ +   ++   E      ++  + E
Sbjct: 242 AEIIETYNADLQQAVQVEEKKAREAATEAVKEQVMAAYEERYAEDEEHDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R ++A++  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            A  SDV++ G+ V VK++  DD+G+I  SMK +     KP
Sbjct: 662 TANVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702


>gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
 gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
          Length = 759

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/693 (40%), Positives = 430/693 (62%), Gaps = 12/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E  +AGRP  +ETG++   ++G+ +  YG+T VL  V      ++G DFFPL+V ++
Sbjct: 57  RKFETTFAGRPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSVEFE 116

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA G+IPG ++RRE RP E+ IL SR++DR IRPLF K  +N+  V + VM  D ++
Sbjct: 117 EKLYAAGRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDN 176

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           S  +  M  AS A+ +S +P+ GP+ G  V  ++G+ VLNP  ++ +   L L ++ +++
Sbjct: 177 SAEITGMNGASLAIAMSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTLAASEE 236

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            ++M+E  AN++ E  +++AI  GH E K ++  I+ +     K        +    L  
Sbjct: 237 KIVMIEAGANEVDEATMMEAIKAGHAEIKKMLAFINSIVAEIGKPKKTFTPVELDHGLLA 296

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++     ++++ +    +K VR   +  +   +    ++EH      +I  +   +Q KV
Sbjct: 297 DVYAKHLDEVKAAMDTDDKNVRDAALLPIMDAI----AAEHPELTAADIDLISYKLQKKV 352

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VRT +L+   R+DGR    +R ++A+VGLL R HGS +F RG TQ + V TLG+ +D Q 
Sbjct: 353 VRTWLLEDGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQL 412

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D LS TQ   ++ HYNF P + GE     +P RREIGHG LA RA+ PVLP  ++FPYT
Sbjct: 413 MDDLSDTQYKRYIHHYNFPPYSVGEARAPRSPGRREIGHGNLAERALVPVLPDQSEFPYT 472

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-----FIILS 477
           +R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ DGD      ++ + 
Sbjct: 473 IRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITDGDPLHGGRWMTML 532

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GITA+QMD+K+ G++  I+  AL++ ++GRL+IL+E + 
Sbjct: 533 DIQGVEDFHGDMDFKVGGTRRGITAIQMDIKVDGLTYEIVEEALEKCRKGRLYILDEIIK 592

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R +L  + P++  M IP D+I++VIG GGKVI+ +      K++I++DG V I+
Sbjct: 593 PVIAEPRKELSPYAPKMFSMMIPVDKIKDVIGKGGKVIQEMCANFNCKIDIEEDGHVFIS 652

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +    + + A   I++I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS+L   R
Sbjct: 653 AVDQEDAKRAIATIKTIVEDPEIGAIYKGRVTRLMNFGAFVEIAPGKEGLVHISKLDDHR 712

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V    DVV  GD ++V + D D +G+I LS K 
Sbjct: 713 VEHVEDVVAVGDPIFVMVTDIDQQGRINLSRKD 745


>gi|262039265|ref|ZP_06012583.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
           goodfellowii F0264]
 gi|261746759|gb|EEY34280.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
           goodfellowii F0264]
          Length = 711

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/698 (45%), Positives = 454/698 (65%), Gaps = 8/698 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T       + +KL TG+IARQ+ G+V+   G TV+L T    + +K+GQDFFPLT
Sbjct: 1   MFDERTYGFNLGTQQVKLSTGKIARQAGGSVMVQCGGTVLLVTATRSKDVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RESRP+ +EILISR++DR IRPLF + + N   ++I V+ +
Sbjct: 61  VDYIEKFYASGKFPGGFVKRESRPSTDEILISRLVDRPIRPLFPEGFLNSVHIVITVVSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P  ++ +  S AL LS +PF G V G  V Y++G+YVLNP  ++ ++  + L V+
Sbjct: 121 DEINQPENLATIGVSVALGLSDIPFAGTVAGVTVGYVDGEYVLNPTAEQLEKSEIHLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A ++SE+V+L+AI+FGH   K +     K       +    + K+ + 
Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGHERIKEICAEQDKFLSQFDVKKYEFEKKEVAP 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQID----DLKKKMVSYFSSEHSSWNE---GEIV 292
             +E     ++++  +   P K  + + ID    +L +K V+   SE    +E    E  
Sbjct: 241 EIKEFIDSFEKNVEEAVMTPGKLEKYEAIDNLEIELFEKYVAKLESEAKEIDENLEKEFK 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + + +I+ KVVR  +L KK R DGR +  +R +  +V  L   HGS+LF RG+TQA+V V
Sbjct: 301 NYYREIEKKVVRDAILYKKYRADGRTTTEIRPLDVEVDTLPVPHGSALFTRGETQALVTV 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG++ DEQ VD +    R  F +HYNF P + GE   + AP RRE+GHG LA RA+  V
Sbjct: 361 TLGSKADEQIVDGIEDESRKKFFLHYNFPPYSVGEAGFLRAPGRRELGHGNLAERALKYV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P    FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI   VAGIAMGL+K+GD 
Sbjct: 421 MPDQETFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGIAMGLIKEGDT 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL+QA  GR  I+
Sbjct: 481 FTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKIEGITREIMDIALKQALEGRYFII 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M +V+SE R ++ E  P++E+M I P +I  +IG  GKVI+ I+E+TG  ++I+DDG+
Sbjct: 541 DKMEEVISEPRPEIAENAPKIELMKIDPSKIAGLIGPAGKVIKAIIEETGVSIDIEDDGS 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I       ++ A E+++  T   E+N IY G+V K+M FGAFV     ++GL+HIS++
Sbjct: 601 VSIFGKDPEMMKKAIELVKRQTQSVELNGIYDGKVTKLMKFGAFVEVLPGKEGLLHISEI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S +RVAK  DV+KEG  + VK++  +D  K  LSMK +
Sbjct: 661 SHKRVAKVEDVLKEGQEIKVKVITMEDENKFNLSMKAL 698


>gi|291530699|emb|CBK96284.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
           70/3]
          Length = 705

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/694 (40%), Positives = 431/694 (62%), Gaps = 6/694 (0%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +  T +  +AGR L +ETG++   ++G+    YGETVV+  V      ++G DFFPL
Sbjct: 1   MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+ YAVGKIPGGYL+RE RP+E  IL SR++DR +RPLF K  +N+  +++ V+ 
Sbjct: 61  AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+ P +++M+ AS A+ +S +P+ GP+ G  V  ++G+ VL P  ++  +  L L V
Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPNAEQRAKSDLQLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237
           + ++  V+M+E  AN++ +D +L AI+ GH E  K +I  I ++     K      S + 
Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240

Query: 238 S-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L E +     E ++ +    +K VR +++  +K  + + F  ++       I     
Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG 
Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D +   +   +M HYNF   + GE      P RREIGHG LA+RA+ PV+P  
Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A++CGS+L+LMDAGVPI  PVAGI+ GL+ +GD ++ +
Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A  +  + R +IL+E+ 
Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539

Query: 537 -KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R  + ++ P++    +P D+IR VIG GGKVI+ +      K++ID++G V I
Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
               L + +    MI++IT  PEV  IYKG+VV++M+FGAFV     +DG+VHIS+L   
Sbjct: 600 CGQDLEKAQNCIAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           RV K  DVV  GD + VK+L+ D++GKI+LS K 
Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRKA 693


>gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AYE]
 gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ACICU]
 gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB900]
 gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
 gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB056]
 gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB058]
 gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB059]
 gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii AYE]
 gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Acinetobacter baumannii ACICU]
 gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
          Length = 697

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/695 (50%), Positives = 477/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV   + K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P    +     
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        E+  +FED
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 696


>gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
 gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
          Length = 695

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/695 (50%), Positives = 477/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV   + K GQDFFPLT
Sbjct: 1   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 120 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P    +     
Sbjct: 180 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        E+  +FED
Sbjct: 240 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 300 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 360 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 420 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 480 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 540 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 600 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 660 ANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 694


>gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida]
          Length = 684

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/664 (48%), Positives = 458/664 (68%), Gaps = 5/664 (0%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +A+  +T V  TVV  + +K+GQDFFPLTVNYQERTYA G+IPGG+ +RE RP+E E LI
Sbjct: 1   MASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLI 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           +R+IDR IRPLF + + NE Q++  V+  + +  P +V+M+ ASAAL LSG+PF GP+  
Sbjct: 61  ARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGA 120

Query: 152 AQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
           A+V +I+ Q+VLNP + ++ Q  LDL V+GT  AVLMVE EA+ L+E+ +L A++FGH +
Sbjct: 121 ARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQ 180

Query: 211 CKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
            + VI+AI +      K      + + +  L E++  + +  L  +  I EK  R +QID
Sbjct: 181 QQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVKAIAEARLGEAYRITEKQARYEQID 240

Query: 270 DLKKKMVSYFSSE---HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
            +K  +++  ++E       +EG+IV +F  +++++VR+ ++  + R+DGR  +TVR + 
Sbjct: 241 AIKADVIAQITAEVAEGEDISEGKIVDIFTALESQIVRSRIIAGEPRIDGRTVDTVRALD 300

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
              G+L RTHGS++F RG+TQA+ V TLGT  D Q +D L+G + + F+ HYNF P + G
Sbjct: 301 ICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVG 360

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E   +G+P RREIGHGRLA+R +  V+P  A+FPY +R+VSEITES+GSSSMA+VCG+SL
Sbjct: 361 ETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASL 420

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           ALMDAGVPI   VAGIAMGLVK+ + F++LSDI GDEDHLG MDFKVAGT +G+TA+QMD
Sbjct: 421 ALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMD 480

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +KI GI+  IM +AL QAK  RLHIL  M + +   R  + +F PR+  M I P +I++V
Sbjct: 481 IKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDV 540

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG GG  IR + E+TG  ++IDDDGTVKIA+      +     I  IT   E   +YKG+
Sbjct: 541 IGKGGATIRALTEETGTSIDIDDDGTVKIAAVDGNSAKEVMARIEDITAEVEAGAVYKGK 600

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V ++ DFGAFV   G ++GLVHISQ++ ERV K SD +  G  V VK+++ D +G+I+L+
Sbjct: 601 VTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLT 660

Query: 687 MKVV 690
           MK V
Sbjct: 661 MKEV 664



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 28/215 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ + T GET  LA                  +  D F    +Y 
Sbjct: 297 RALDICTGVLPR-THGSAIFTRGETQALAVATLGTERDAQIIDELTGERSDHFLF--HYN 353

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDL 122
              Y+VG+           P   EI   R+  R +  +      +    +V+  + + + 
Sbjct: 354 FPPYSVGETGMI-----GSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITESNG 408

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQGSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +  + ++V+   +   ++  G +D  
Sbjct: 409 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFK 466

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECK 212
           V+GT+  V  ++++     E +  + +    N+ K
Sbjct: 467 VAGTRTGVTALQMDIKI--EGITAEIMQIALNQAK 499


>gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
 gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
          Length = 706

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/693 (40%), Positives = 436/693 (62%), Gaps = 5/693 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + V EIE+ G+ +  ETG++   S+ +VL  +GETVVL  V      ++G DFFPL
Sbjct: 1   MFENYKVYEIEYGGKKMTFETGKMCCLSNASVLVRWGETVVLVNVTASAKPREGIDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVGKIPG +++RESRP++  IL SR++DR IRPLF K  +N+  V++ VM 
Sbjct: 61  SVDFEEKLYAVGKIPGSFIKRESRPSDKAILSSRLVDRPIRPLFPKDMRNDCSVVMTVMS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D +  P +  MV  S AL +S +P+ GP+ G  V  ++G+ +++P   +  +  L+L V
Sbjct: 121 VDPDCLPEIAGMVGTSFALSISDIPWNGPIAGINVGLVDGEIIVSPDAAQRAKSDLNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +  +D + M+E  AN+++ DV+LDAII GH E K ++  I  +     K      S +  
Sbjct: 181 AANEDVICMIEAGANEVANDVMLDAIIKGHEEIKRMVAFIKNVQAEIGKPKFSFQSMEVP 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +D++ +     K VR +++  + +++   F  E    N   I      
Sbjct: 241 HELFDAIRDFAIDDVKAALDTDNKNVRDERLAPVVERIHEKFDDEE-KTNAAVIDEAIYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS +F RG TQ + V TLGT 
Sbjct: 300 LQKFIVRRWLLDEQKRVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTI 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D +   ++  ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   
Sbjct: 360 SEAQKLDGIDDQEQKRYIHHYNFPSYSVGETRPSRGPGRREIGHGALAERALEPVIPPVE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+  S+GS+S  ++CGS+LALMDAGVPI +PVAGI+ GL+ +GD ++ + 
Sbjct: 420 EFPYTIRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKRPVAGISCGLITEGDRWMTMV 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS- 536
           DI G ED  G MDFKV GT+ GITA+QMD+KI G++ +I+  A ++  + R++ILN++  
Sbjct: 480 DIQGLEDFFGDMDFKVGGTEKGITAIQMDLKIVGLTYDIIREAFEKTYKARMYILNDIML 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+   R +L ++ P+++ + I PD+IR VIG GGKVI+ I      K++I+DDG V +A
Sbjct: 540 PVIPAPREELSKYAPKMKSIKIHPDKIREVIGSGGKVIQKICADCNVKIDINDDGDVFVA 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    +  A  +I +I + PE+  IYKG+V ++M+FGAFV     ++G+VHIS+L   R
Sbjct: 600 GTDSDGVRRALSIIETIVNDPEIGAIYKGRVTRLMNFGAFVELAPGKEGMVHISKLDMGR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V K  DVV  GD V VK+ D D +G+I LS + 
Sbjct: 660 VEKVEDVVAVGDEVIVKVTDIDQQGRINLSRRD 692


>gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
           12042]
 gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
           12042]
          Length = 731

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/701 (42%), Positives = 447/701 (63%), Gaps = 11/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                 +  GR L +ETG IA+Q+ GAV+  Y +TVVL+T   + + KD  DFFPLTV++
Sbjct: 3   KEVFTFDLCGRNLTIETGEIAKQAGGAVVVRYQDTVVLSTATANHTPKD-SDFFPLTVSF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+LRRE RP+E+  L +RMIDR IRPLF++ ++NE QV+  V+  D +
Sbjct: 62  EEKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            S  + +M  AS AL +S +PF GP+ G  V  ++G++V+NP ++E ++  + L V+GT+
Sbjct: 122 CSAEMAAMFGASCALCISDIPFNGPIAGVIVGRVDGKFVINPSVEESEKSDIHLTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+ MVE  A ++SE+ ++DA++FGH+  K + E   ++   CAK  + I      + ++
Sbjct: 182 DAINMVEAGAKEVSEEEMIDALMFGHDHIKMLCEFQEQIIAKCAKPKMEIKLDVVPEEIK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------GEIVSVF 295
            E+ ++ K  L  +  I  K  R  +ID++  +M + F +   +  +       ++ +  
Sbjct: 242 AEIDELAKARLIEAVSIKLKLERYGKIDEITDEMAALFEAREYASEKLKDKTVKQVRAYC 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +I A  VR ++ ++K+R DGR  + +R +++QV LL R HGS++F RG+TQ +   TLG
Sbjct: 302 TEIVANEVRRLISEEKIRPDGRAVDELRPLNSQVDLLPRVHGSAMFTRGETQVMSACTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              D Q +D L+  +   FM HYNF P + GE  RMG+P RREIGHG L  RA+  V+P 
Sbjct: 362 ALGDNQIIDDLTEIETKRFMHHYNFPPYSVGETGRMGSPGRREIGHGALGERALSAVIPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FI 474
             +FPYT+R+V+E+ ES+GSSS A++C  ++ALM AGVPI  PVAG+AMGL+K  D+ + 
Sbjct: 422 EEEFPYTIRLVAEVLESNGSSSQASICAGTMALMSAGVPIKAPVAGVAMGLIKTSDEHYT 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+GR  I+  
Sbjct: 482 VLTDIQGMEDHYGDMDFKVAGTPKGITALQMDIKIDGINRAILEEALAQAKKGRAEIMAN 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTV 593
           M   +SE R ++  + P++  M IP D+IR VIG GGK+I  I+      K++I+DDG+V
Sbjct: 542 MMAAISEPRPEVSPYAPKMYRMMIPVDKIREVIGTGGKMINQIIADCDNVKIDIEDDGSV 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I  S    I  A E I  I    +V +IY G+VV++  FGAFV      DGL+H+S++ 
Sbjct: 602 VIYHSDKNAIMKAAETINQILREAKVGEIYDGKVVRLEKFGAFVELFPGTDGLLHVSKID 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +RV K  DV+K GD + V + + D++G++ +S + + +  
Sbjct: 662 YKRVEKPEDVLKLGDVIKVIVTEIDEKGRVNVSHRDLMEKP 702


>gi|257126208|ref|YP_003164322.1| polynucleotide phosphorylase/polyadenylase [Leptotrichia buccalis
           C-1013-b]
 gi|257050147|gb|ACV39331.1| Polyribonucleotide nucleotidyltransferase [Leptotrichia buccalis
           C-1013-b]
          Length = 700

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/700 (44%), Positives = 457/700 (65%), Gaps = 8/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+          + +K+ TG+IARQ+ G+V+   G T++L T    + +++GQDFFPLT
Sbjct: 1   MFEEKIYGFNLGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RE++P  +E+LISR+IDR IRPLF + + N   +++ V+ +
Sbjct: 61  VDYIEKFYASGKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D  + P  ++++  SAAL LS +PF G V G  V YING+Y+LNP  ++  +  + L V+
Sbjct: 121 DEVNYPENLAIIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A ++SE+V+L+AI+FGH + K +     K  +    +    + K+   
Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGHEKIKEICAEQDKFLEQFDVQKYEFEKKEVDP 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQID----DLKKKMVSYFSSEHSSWNE---GEIV 292
             +E     + ++  +   P K  + + ID    +L +K V    +E    +E    E  
Sbjct: 241 EIKEFIDGFENEVEKAIMTPGKLEKYEAIDNLEIELFEKYVQKLENEDKEIDENLEKEFK 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ ++VR  +L K+ R DGR +  +R I  ++  L   HGS+LF RG+TQA+VV 
Sbjct: 301 KYYRDVEKRLVRDAILYKQYRADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVA 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG++EDEQ +D +    R  F +HYNF P + GE   M AP RRE+GHG LA RA+  V
Sbjct: 361 TLGSKEDEQIIDGMEDETRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHGNLAERALKYV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P+  +FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI   VAGIAMGL+K+GD 
Sbjct: 421 MPEQDKFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGIAMGLIKEGDT 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL+QA  GRL I+
Sbjct: 481 FTVLTDIQGLEDHLGDMDFKVAGTKDGITAIQMDIKIEGITREIMEIALRQALEGRLFII 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M  V+SE R ++ E  P++EI+ I PD+I  +IG GGKVIR I+++TG  ++I+DDGT
Sbjct: 541 DKMEAVISEPRAEVSENAPKIEILKISPDKIAGLIGPGGKVIRAIIDETGVSIDIEDDGT 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I       ++ A E+++  T   E+N IY+G+V K+M FGAFV     ++GL+HIS++
Sbjct: 601 VSIFGKESENMKKALELVKRQTQSVELNTIYEGKVTKLMKFGAFVEVLPGKEGLLHISEI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           S +RV KT D +KEG  V VK++  ++  K  LSMK + Q
Sbjct: 661 SNKRVEKTEDALKEGQNVRVKVISMENEDKFNLSMKALKQ 700


>gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           SDF]
 gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii]
          Length = 697

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/695 (49%), Positives = 475/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  VL T G   VL  VV   + K GQDFFPLT
Sbjct: 3   MFNIVRKEFQFGQHQVVLETGRVARQAN-TVLITMGGVTVLVAVVAAPTAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRASEAETLTSRLIDRPIRPLFPEGYYNEIQVTATVVSS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q  LDL V+
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQSDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P    +     
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSDWVAPAHNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        E+  +FED
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIADEVDYLFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+HILNEM+K
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
              +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 TNVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 696


>gi|119477397|ref|ZP_01617588.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2143]
 gi|119449323|gb|EAW30562.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2143]
          Length = 677

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/665 (49%), Positives = 461/665 (69%), Gaps = 4/665 (0%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           + T G+  VL TVV  +S K+G DFFPL V+YQE++YAVGKIPGG+ +RE+RP+E E L 
Sbjct: 1   MVTVGDVQVLCTVVGAKSAKEGMDFFPLGVHYQEKSYAVGKIPGGFFKREARPSEKETLT 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           SR+IDR +RPLF K +KNE QV+  VM  D ++ P + +++  SAAL +SGLPF GPV  
Sbjct: 61  SRLIDRPMRPLFPKGFKNEVQVVCTVMSADHDTDPDIAALIGTSAALSISGLPFGGPVGA 120

Query: 152 AQVDYI-NGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHN 209
           A+V +  +  Y+LNP   +  GS LD+ V+GT DAVLMVE EA +LSED +L A++F H 
Sbjct: 121 ARVGFTADNGYILNPSYSQLAGSALDMVVAGTSDAVLMVESEAQELSEDQMLGAVLFAHQ 180

Query: 210 ECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI 268
           E + VI+ I +LA    K        ++ + L   ++   K+ +  +  I +K  R  ++
Sbjct: 181 EMQTVIKVIGELASEAGKPSWNWQPEEENTALLAAVANGYKQGIGDAYRITDKADRYSKV 240

Query: 269 DDLKKKMVSYFS-SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
            +LK + +   + +E + +  G++  VF  ++   VR  +L+ + R+DGRD+ TVR I A
Sbjct: 241 GELKTQAIEQLAKAEGAEYGAGDVSGVFSKLEKSTVRQRILNGEPRIDGRDNNTVRPIQA 300

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387
           +VG+L + HGS+LF RG+TQAI V TLGT  D Q +D+L G + ++FM+HYNF P + GE
Sbjct: 301 EVGVLAKAHGSALFTRGETQAIGVTTLGTTRDAQLIDALEGKREDNFMLHYNFPPYSVGE 360

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
             R+G  SRRE+GHGRLARR +  VLP    FPYT+R+V+EITES+GSSSMA+ C +S++
Sbjct: 361 CGRIGFTSRREVGHGRLARRGVAAVLPNPEDFPYTIRVVAEITESNGSSSMASACVASMS 420

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           +M+AGVP+  PVAGIAMGL+K+G+ F +L+DI GDEDHLG MDFKVAGT +G+TA+QMD+
Sbjct: 421 MMEAGVPLKAPVAGIAMGLIKEGERFAVLTDILGDEDHLGDMDFKVAGTANGVTALQMDI 480

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           KI GI+E IM +AL+QA   RLHIL +M+ V+SESR  + +  P +    I  D+IR+VI
Sbjct: 481 KIEGINEQIMSIALEQALTARLHILGQMNAVISESRSAVSDNAPSMATFKIDSDKIRDVI 540

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G GG  IR I E+TGA V+IDDDGT++I  S  A  +AA   +  IT   EV  IY+G V
Sbjct: 541 GKGGATIRSITEETGATVDIDDDGTIRIYGSDAASRDAAVAKVEEITAEAEVGAIYEGTV 600

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            +++DFGAFV+    +DGLVHISQ+S ERV K +D + EG  + VK+LD D RG+IKLSM
Sbjct: 601 ARIVDFGAFVNILPGKDGLVHISQISNERVEKVTDYLAEGQVIKVKVLDVDQRGRIKLSM 660

Query: 688 KVVDQ 692
           K +++
Sbjct: 661 KEMEE 665



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL--------TVNYQE 65
           RP++ E G +A+ + G+ L T GET  +  V    + +D Q    L         ++Y  
Sbjct: 296 RPIQAEVGVLAK-AHGSALFTRGETQAI-GVTTLGTTRDAQLIDALEGKREDNFMLHYNF 353

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLE 123
             Y+VG+       R    +  E+   R+  R +  +    + +    +V+  + + +  
Sbjct: 354 PPYSVGECG-----RIGFTSRREVGHGRLARRGVAAVLPNPEDFPYTIRVVAEITESNGS 408

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFV 178
           SS  + S   AS ++M +G+P + PV G  +  I  G+           ++  G +D  V
Sbjct: 409 SS--MASACVASMSMMEAGVPLKAPVAGIAMGLIKEGERFAVLTDILGDEDHLGDMDFKV 466

Query: 179 SGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNE 210
           +GT + V  ++++     ++E ++  A+      
Sbjct: 467 AGTANGVTALQMDIKIEGINEQIMSIALEQALTA 500


>gi|289423077|ref|ZP_06424892.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156408|gb|EFD05058.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           anaerobius 653-L]
          Length = 696

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/694 (42%), Positives = 436/694 (62%), Gaps = 4/694 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E E AGR L +E G+I   ++G  +  YG+T+++         +DG DFFPL+
Sbjct: 1   MFEHRIFETELAGRKLSVEVGKICEMTNGNCIMRYGDTMLMVNATKSAEPRDGIDFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++E+ Y+VGKIPGG+L+RE + +E  +L SR+IDR IRPLF + ++N+ QV+  V+  
Sbjct: 61  VDFEEKLYSVGKIPGGFLKREGKASEKAVLTSRLIDRPIRPLFPEGFRNDVQVVATVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + +P +V+M+ +S AL +S +PF GP     +  ++G++V+NP  ++ +  +L L VS
Sbjct: 121 DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVLIGLVDGEFVVNPTQEQREVSTLHLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DA++MVE  A ++ +++VL+AI+F H E K ++  I ++     KE   I      +
Sbjct: 181 GTKDAIMMVEAGAEEIDDEIVLNAILFAHEEIKKIVAFIEEIVAAVGKEKCEIKLHLPDE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN--EGEIVSVFE 296
            L  ++    +E +R +    EK  R +++D +  + + YF  E   +    G+I  V  
Sbjct: 241 DLRSKVDAFAREKMRAAVKTVEKMERTEKMDAVSAETLEYFEKELEEFEEVAGDIEEVLH 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           DI    VR++++D+ VR D R  + +R I  + GL+ RTHGS++F RG TQ + V TLG 
Sbjct: 301 DIIKDEVRSLIVDENVRPDNRALDEIRPIWCETGLIPRTHGSAIFTRGQTQVLNVTTLGA 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L       +M HYNF   + GE      P RREIGHG LA RA+ PV+P  
Sbjct: 361 LGDGQKLDGLDEEDNKRYMHHYNFPAYSVGETRPSRGPGRREIGHGALAERALVPVIPSQ 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+VSE+  S+GS+S A+VC S+L+L+DAGVPI   VAGIAMGL+K  D   +L
Sbjct: 421 DDFPYAIRLVSEVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI E ++  AL+QAK GR+HIL EM 
Sbjct: 481 SDIQGMEDHLGDMDFKVAGTEHGVTAIQMDIKIAGIDEQVLRQALKQAKAGRMHILGEMK 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           KV++E + +L  + P++  M I PD+IR+VIG GGK+I  I+++TG K++I+  G V + 
Sbjct: 541 KVITEPKPELSPYAPKIVKMQINPDKIRDVIGPGGKMINKIIDETGIKIDIEQTGEVFVV 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 I  A  MI  I    E  KIYKG V ++  FGAF+     + GL+HISQ+S +R
Sbjct: 601 GVEQEMINKAISMIEDIVAEAEPGKIYKGTVTRIESFGAFIEILPGKQGLLHISQISNKR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K  DV+  GD V V + + D++ +I LS+K +
Sbjct: 661 VEKVEDVLSIGDVVDVLVTEIDNKDRINLSIKAI 694


>gi|167750806|ref|ZP_02422933.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
 gi|167656241|gb|EDS00371.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
          Length = 705

 Score =  760 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/694 (40%), Positives = 431/694 (62%), Gaps = 6/694 (0%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +  T +  +AGR L +ETG++   ++G+    YGETVV+  V      ++G DFFPL
Sbjct: 1   MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+ YAVGKIPGGYL+RE RP+E  IL SR++DR +RPLF K  +N+  +++ V+ 
Sbjct: 61  AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+ P +++M+ AS A+ +S +P+ GP+ G  V  ++G+ VL P  ++  +  L L V
Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPDAEQRAKSDLQLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237
           + ++  V+M+E  AN++ +D +L AI+ GH E  K +I  I ++     K      S + 
Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240

Query: 238 S-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L E +     E ++ +    +K VR +++  +K  + + F  ++       I     
Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG 
Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D +   +   +M HYNF   + GE      P RREIGHG LA+RA+ PV+P  
Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A++CGS+L+LMDAGVPI  PVAGI+ GL+ +GD ++ +
Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A  +  + R +IL+E+ 
Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539

Query: 537 -KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R  + ++ P++    +P D+IR VIG GGKVI+ +      K++ID++G V I
Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
               L + +    MI++IT  PEV  IYKG+VV++M+FGAFV     +DG+VHIS+L   
Sbjct: 600 CGQDLEKAQNCIAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           RV K  DVV  GD + VK+L+ D++GKI+LS K 
Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRKA 693


>gi|239907801|ref|YP_002954542.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 751

 Score =  760 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/703 (43%), Positives = 450/703 (64%), Gaps = 8/703 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F    +E     + + +ETGR+A Q+DGA+    G TVVL T       ++   FFPL V
Sbjct: 5   FSPIRLEAAIGDKTVTIETGRLANQADGAIWIQSGGTVVLVTACTQALAEEK-GFFPLVV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +YQE  YA G+IPG Y RRE  RP+E E+L+ R+IDR  RPLF K +++E Q+I  V+  
Sbjct: 64  DYQEMAYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178
           D E  P V+++  ASAAL LS +PF+GP+ G +V YI+GQ+VLNP + +      L+L  
Sbjct: 124 DGEVEPDVLALTGASAALHLSKIPFQGPIAGGRVGYIDGQFVLNPTVAQIAAGADLNLVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           + ++DAV+MVE     +SE+++ DA+ FGH    P+++   +L +   K  I        
Sbjct: 184 AASRDAVVMVEGAGRFVSEELLADALEFGHKAILPLLDLQEQLREKAGKPKIAFTPPAPI 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN--EGEIVSVF 295
            +LE  ++   +  L+ +  I EK  R +    +K+ ++    + +      + +   + 
Sbjct: 244 VELEALVAATAEAGLKQAFTIQEKMARREARKAVKQAVIEAVVAAYPETPLYKMKAGEIL 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ K++R ++ D  +R+DGR++ TVR I  +VG+L RTHGS+LF RG+T+A+ V TLG
Sbjct: 304 ESMEKKLLRKLIKDTGIRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVATLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ +++L+G     FM+HYNF P   GEV  +  PSRREIGHG LA R+I PVLP 
Sbjct: 364 STGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRREIGHGALAERSILPVLPG 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FP+T+RIVS++ ES+GSSSMA+V G+SLALMDAGVPI  PVAGIAMGL+K+ DDF++
Sbjct: 424 PEEFPFTMRIVSQVMESNGSSSMASVAGASLALMDAGVPIKAPVAGIAMGLIKEDDDFLV 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED +G MDFKVAGT  G+T +QMD+KI GI + +M  AL QAK  RLHIL  M
Sbjct: 484 LTDILGDEDAMGDMDFKVAGTADGVTGIQMDIKITGIPQAVMRQALNQAKDARLHILGRM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           + VL E R +L    P++ ++ I P++IR VIG GGK I+ +  +TGA ++I+D G + I
Sbjct: 544 AAVLPEPRPELSALAPQLAVVHINPEKIREVIGPGGKNIKAMTAETGASIDIEDTGKISI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +L  +E A+  +       +V   YKG+V+K++D GA V      +GLVH+SQL  E
Sbjct: 604 FAPTLESLEKAKARVLYYDQHADVGANYKGRVIKIIDCGAIVEILPGLEGLVHVSQLDVE 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGKP 697
           RVA  +DVVK G  + VK+LD +  G+++LS K V ++  G P
Sbjct: 664 RVASPADVVKMGQEIEVKVLDVEPTGRVRLSRKAVLNEERGIP 706


>gi|223933942|ref|ZP_03625902.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
           89/1591]
 gi|302024508|ref|ZP_07249719.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           05HAS68]
 gi|330833543|ref|YP_004402368.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
 gi|223897389|gb|EEF63790.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
           89/1591]
 gi|329307766|gb|AEB82182.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
          Length = 739

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/698 (40%), Positives = 437/698 (62%), Gaps = 8/698 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E  +AG+ L +ETG++A+Q++GAV+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y+NG+ ++NP   + + SL DL V+G +
Sbjct: 122 ASAPMAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDKAQMEESLLDLTVAGNK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSED++L+A++ GH   + +++  +++     KE   ++  +   +L+
Sbjct: 182 DAINMVESGAKELSEDIMLEALLKGHEAIQELLDFQNQIVAAVGKEKADVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+     +DL+ +  + EK  R    + +++ +++ +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNDDLKKAVQVEEKLAREDATNAVRETVIAAYEEKYAEHEEFDRIMRDVHEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL  
Sbjct: 302 LMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  F+ HYNF   + G   R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLGDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++   +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EDFPYAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R  L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I 
Sbjct: 542 ATIPEVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S     IE  +E+I  +    +V+++++ +VV++  FGAFV+     D LVH+S+++  R
Sbjct: 602 SPDRDAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           V K  D+V+ GD V VK++  DD+G+I  SMK +    
Sbjct: 662 VNKPEDLVEIGDIVDVKVIKIDDKGRIDASMKALLPKP 699


>gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
 gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
          Length = 697

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/695 (49%), Positives = 474/695 (68%), Gaps = 4/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++   E ++    + LETGR+ARQ++  V+ T G   VL  VV     K GQDFFPLT
Sbjct: 3   MFNIIRKEFQFGQHNVILETGRVARQAN-TVVITMGGVQVLVAVVAQPKAKAGQDFFPLT 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE QV   V+  
Sbjct: 62  VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGYFNEIQVTATVISS 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+  SAAL ++G PF GP+ GA+V  ING+Y+LNP L++  +  LDL V+
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYILNPNLEQLKESDLDLVVA 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI + A      E   +      
Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFED 297
           +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E+       E+  +FED
Sbjct: 242 ELLGKLKEAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIAEEVNELFED 301

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + VR  +L  K R+DGRD++TVR I  QVG+L R HGS+LF RG+TQA+V  TLG  
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +  VLP   
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM  AL QA  GR+HILNEM++
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMESALNQAYAGRMHILNEMNQ 541

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S +R ++    P  +++ I PD+IR+VIG GG  IR I E+T A ++I+D+GTV++  
Sbjct: 542 VISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            + A  +AA   I+++T   E   IY G+V+++++FGAFV+     DGL+HISQ+S ER+
Sbjct: 602 ETKAAAQAAVAKIQALTAEIEPGTIYTGKVIRIVEFGAFVNILPGTDGLLHISQISNERI 661

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 662 ANVADVLKEGQEVKVQVADVDNRGRIKLTMKDIEQ 696


>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
 gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
          Length = 714

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/696 (43%), Positives = 438/696 (62%), Gaps = 11/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E + AGRPL LE G+ A+Q+ G+VL  YG+TVVLAT        +  DF PLTV ++
Sbjct: 12  HRYETQVAGRPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEEPIEA-DFLPLTVEFE 70

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E QVI+ V+  D ++
Sbjct: 71  ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKN 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
            P ++   AASAALMLS +P+EGPV   +V  I GQ+VLNP L E  + +LDL V+G++D
Sbjct: 131 PPDILGPTAASAALMLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSESALDLVVAGSRD 190

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKL 240
           A+LMVE  A ++ E++++ A+ F H E +P+++   ++A+   K  +     +     + 
Sbjct: 191 AILMVEAGAQEVDEEMLVQALEFAHREMQPILDLQEEIARALGKPKMAWTPPEALSEEEK 250

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVF 295
           E      ++  L        K  R + ++   + +V+    +       E       S F
Sbjct: 251 EAFYRLAVERGLSAVLQTASKGERSRALEAFAEALVAEALPKGEDGTPDESKKPLYESAF 310

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            ++  K +R ++L++  R DGR  + +R I  +V +L RTHGS++F RG+TQ +  VTLG
Sbjct: 311 AEVVRKELRRLVLEEGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLG 370

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D L   +   F++HYNF P +TGEV R+   SRREIGHG LA+RA+  VLP 
Sbjct: 371 TGRDEQIIDDLGIDETEKFLVHYNFPPFSTGEVKRLRGVSRREIGHGNLAKRALKAVLPP 430

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVP+  PVAG+AMGLV +G+  +I
Sbjct: 431 EEAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGERAVI 490

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  R+ IL+ M
Sbjct: 491 LTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALMQAREARMKILDLM 550

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             VL   R +L  F PR+  + +P ++I  VIG GGK +R + E+ G +V+I++DGTV+I
Sbjct: 551 ESVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVRI 609

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS +   + A++ I  +T   +V +IY+G V K+  FGAFV      +GL+HISQ++  
Sbjct: 610 YSSDMEAAQKAKKRIEELTLEAKVGEIYEGTVTKITPFGAFVSLFPGTEGLLHISQIAPG 669

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV +  D +K GD + VK+   D+RGKI L    ++
Sbjct: 670 RVERVEDHLKVGDVIKVKVHRIDERGKIDLIRPELE 705


>gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 745

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/691 (39%), Positives = 428/691 (61%), Gaps = 7/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              + E AGR L +ETG++A+ ++G+ L  YG TVVL+T    +  + G DFFPL+V+Y+
Sbjct: 3   KIFKTELAGRDLIVETGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA+GKIP G+++RE RP+E  IL SR+IDR +RPLF K  +N+  V   V+  D  +
Sbjct: 63  EKMYAIGKIPRGFIKREGRPSEKAILTSRVIDRPMRPLFPKDLRNDVAVNNLVLAVDQNA 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           SP + +M+ +S A+ +S +P+ GP+ G Q+  I+GQ ++NP  ++  Q  + + ++GT++
Sbjct: 123 SPEIAAMIGSSIAVAISDIPWRGPISGVQLGLIDGQVIINPNEEQRKQSQMAVTLAGTEE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            + M+E  A+++ EDV+++A++ GH E +     I  +     K     +S     ++  
Sbjct: 183 KICMIEAGADEVPEDVMMNALLAGHQEIQKTCRFIKSIVAEIGKPKFTYESAAVPEEIMT 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+ Q   E ++ +    +K  R + ID L  ++  + ++ +  W           ++ K 
Sbjct: 243 EVKQFAAEKMKQAVLAVDKNERDQNIDALTAEINEHLTAINEEWAAW-TNDAVYQLEKKT 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +  +  R+DGR  + +R +S   G+L   HGS LF RG TQ + + TLG     Q 
Sbjct: 302 VRNYLFHEHRRVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQT 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   +M HYN    +TGE     +P RREIGHG LA R++ PVLP   +FPY 
Sbjct: 362 LDGLDNEKEKRYMHHYNMPGYSTGEAKPNRSPGRREIGHGALAERSLVPVLPSEEEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV---KDGDDFIILSDI 479
           +R VSEI  S+GS+S  +VC S+LALMDAGVPI +PVAGI+ GL+   ++ +DF++  DI
Sbjct: 422 IRTVSEIMMSNGSTSQGSVCASTLALMDAGVPIKRPVAGISCGLLVNEENDEDFLVFMDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKVAGT  GIT++Q+D+K+ G+S +++  AL   ++GRL I+N+ +   
Sbjct: 482 QGIEDFFGDMDFKVAGTTEGITSIQVDIKVDGLSYDVIRQALAITRKGRLQIINDIILPR 541

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L   R +L ++ P++  ++IP D+IR VIG GGKVI  I+  TG  ++I++DG V I++ 
Sbjct: 542 LPGPRAELSQYAPKILQLSIPVDKIREVIGQGGKVINKIIADTGVAIDIEEDGRVFISAV 601

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
            L +   A ++I  I + PE  +++ G+V ++M+FGAFV F   ++GLVHIS+++ + V 
Sbjct: 602 DLEQGNKALKIINGIVNDPEPGQVFTGKVTRLMNFGAFVEFLPGKEGLVHISKMAWQHVE 661

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  D VKEGD V VK+++ D +G+I LSM+ 
Sbjct: 662 KVEDCVKEGDIVTVKVIEIDAQGRINLSMRD 692


>gi|195978853|ref|YP_002124097.1| polynucleotide phosphorylase/polyadenylase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|226702690|sp|B4U573|PNP_STREM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|195975558|gb|ACG63084.1| polyribonucleotide nucleotidyltransferase PnpA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 714

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP   + + SL +L V+GT+
Sbjct: 122 ASAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+ MVE  A +L E ++L+A++ GH   + +I    ++     KE   ++    +  L+
Sbjct: 182 DAINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+ +    DL+ +  + EK  R    + +K+++++ +   +++  E      ++  + E
Sbjct: 242 AEIIETYNADLQQAVQVEEKKAREAATEAVKERVIAAYEERYAADEEHDRIMRDVTEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R ++A++  L   HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPMVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            A  SDV++ G+ V VK++  DD+G+I  SMK +     KP
Sbjct: 662 TANVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702


>gi|281492468|ref|YP_003354448.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376132|gb|ADA65623.1| Polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 773

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/700 (41%), Positives = 442/700 (63%), Gaps = 11/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      +      DFFPL VNY
Sbjct: 3   KETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMA--TGDFFPLQVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 61  EEKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +S  V +M  +S AL +S +PF+GP+ G +V YI+G+Y++NP + E +  SL+L V+G  
Sbjct: 121 ASGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNI 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++       L+
Sbjct: 181 NAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLK 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  I EK  R      +K+ ++S +S+++ +         ++  + E
Sbjct: 241 AEVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILE 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTL 354
            ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL
Sbjct: 301 GMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP
Sbjct: 361 APMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ 
Sbjct: 421 SLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYT 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ 
Sbjct: 481 VLTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDV 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           +   +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   
Sbjct: 541 IEATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCS 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS  A I+ A+E+I  +    +V +IY  +VV++  FGAFV+  G +D +VHIS+++ 
Sbjct: 601 IFSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAW 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            R     DVVK GDTV VK++  DD+G++  SM+ + +  
Sbjct: 661 SRTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRALVEKP 700


>gi|260889890|ref|ZP_05901153.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
           F0254]
 gi|260860496|gb|EEX74996.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
           F0254]
          Length = 699

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/699 (44%), Positives = 458/699 (65%), Gaps = 8/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+          + +K+ TG+IARQ+ G+V+   G T++L T    + +++GQDFFPLT
Sbjct: 1   MFEEKIYGFNLGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RE++P  +E+LISR+IDR IRPLF + + N   +++ V+ +
Sbjct: 61  VDYIEKFYASGKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D  + P  ++ +  SAAL LS +PF G V G  V YING+Y+LNP  ++  +  + L V+
Sbjct: 121 DEVNYPENLATIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAV MVE  A ++SE+V+L+AI+FGH + K +     K  +    +    + K+   
Sbjct: 181 GTKDAVTMVEAGAKEVSEEVMLEAIMFGHEKIKEICAEQDKFLEQFDVQKYEFEKKEVDS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQID----DLKKKMVSYFSSEHSSWNE---GEIV 292
             +E     + ++  +   P K  + + ID    +L +K V    +E    +E    E  
Sbjct: 241 EIKEFIDSFENEVEKAIMTPGKLEKYEAIDNLEIELFEKYVEKLENEDKEIDENLEKEFK 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ ++VR  +L K+ R DGR +  +R I  ++  L   HGS+LF RG+TQA+VV 
Sbjct: 301 KYYRDVEKRLVRDAILYKQYRADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVA 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG++EDEQ +D +    R  F +HYNF P + GE   M AP RRE+GHG LA RA+  V
Sbjct: 361 TLGSKEDEQIIDGMEDETRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHGNLAERALKYV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P+T +FPYT+R+VSEITES+GSSS A++CG SLALM AGVPI   VAGIAMGL+K+G+ 
Sbjct: 421 MPETDKFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGIAMGLIKEGET 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+  IM +AL+QA  GRL I+
Sbjct: 481 FTVLTDIQGLEDHLGDMDFKVAGTRDGITAIQMDIKIEGITREIMEIALRQALEGRLFII 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M  V+SE R Q+ E  P++EI+ I PD+I  +IG GGKVIR I+++TG  ++I+DDGT
Sbjct: 541 DKMEAVISEPRAQVAENAPKIEIIKINPDKIAGLIGPGGKVIRAIIDETGVSIDIEDDGT 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I       ++ A E+++  T   E+N+IY+G+V K+M FGAFV     ++GL+HIS++
Sbjct: 601 VSIFGKESENMKKALELVKRQTQSVELNEIYEGKVTKLMKFGAFVEVLPGKEGLLHISEI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           S +RV KT DV+KEG  V VK++  +   K  LSMK ++
Sbjct: 661 SNKRVEKTEDVLKEGQNVRVKVISMESEDKFNLSMKTLN 699


>gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
 gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
          Length = 712

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/691 (49%), Positives = 481/691 (69%), Gaps = 4/691 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNY 63
               +++    + LETG+IARQ+  +VL + G   VL TVV ++    + +DFFPLTV Y
Sbjct: 13  IKKVVQFGSEEIILETGKIARQATASVLVSVGGVTVLVTVVGNKRQTDENRDFFPLTVQY 72

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QERTYA G+IPGGY +RE RP+E EIL SR+IDR IRPLF + + NE QV+  V+    +
Sbjct: 73  QERTYAAGRIPGGYFKREGRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVLSSTPD 132

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            +P + +++ ASAAL LSGLPF+ P+   +V Y +GQY+LNP + E +   LDL V+ T+
Sbjct: 133 INPDIPALIGASAALALSGLPFKEPIAAVRVGYADGQYILNPSMKELETSDLDLVVAATE 192

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--FSKL 240
            AVLMVE +A +LSE+++L AI+FGH + + VI++I +LA   +K    I +     + +
Sbjct: 193 KAVLMVESQAAELSEEIMLKAILFGHQQMQGVIQSIKELAIEASKPAWDIKTLVSMDAHV 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E+ + Q I   L  +  IPEK++R  ++D++++  ++ +  E        I  V E  + 
Sbjct: 253 EQAIIQSIDTSLTEAYQIPEKFMRKFKLDEIRENTMAQWLDEEKGITAKAIQFVLEKREE 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+VR+ +L  + R+DGRD + VR I+ + G L RTHGS+LF RG+TQA+VV TLGT  D 
Sbjct: 313 KIVRSRILSGQSRIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDA 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q V++L G  R  FM+HYNF P + GE  ++G+P RREIGHG LA+RA+  VLP  + FP
Sbjct: 373 QTVEALDGEGRETFMLHYNFPPYSVGETGQIGSPKRREIGHGNLAKRALRAVLPSESDFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y LR+VSEITES+GSSSMATVCG+S+ALMDAGVP+ K VAGIAMGL+K+G+ F +L+DI 
Sbjct: 433 YVLRVVSEITESNGSSSMATVCGASVALMDAGVPLKKHVAGIAMGLIKEGEQFAVLTDIL 492

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E I+ +AL QA+ GRLHIL+ M + L+
Sbjct: 493 GDEDHLGDMDFKVAGTVDGVTALQMDIKIEGITEEILKVALNQAREGRLHILSIMKEALA 552

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R+++  + PR+  + I P++IR++IG GG  IR I E+TG  ++I DDG V+I++S  
Sbjct: 553 EPRIEVSPYAPRITTLKINPEKIRDLIGKGGATIRAITEETGTLIDISDDGMVRISTSDS 612

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A E IR +T   EV  IY+G +VK+ DFGAFV+    RDGLVHISQ+S ERV + 
Sbjct: 613 QACQNAIERIRKVTAEVEVGCIYEGAIVKLTDFGAFVNVLPGRDGLVHISQISKERVEQV 672

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           SDV+ EG  V VK+L+ D +G+I+L+MK ++
Sbjct: 673 SDVLSEGQIVKVKVLEIDRQGRIRLTMKDIE 703


>gi|329116899|ref|ZP_08245616.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
           NCFD 2020]
 gi|326907304|gb|EGE54218.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
           NCFD 2020]
          Length = 748

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/701 (40%), Positives = 437/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F+  ++NE QVI  V+  D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFADGFRNEIQVINTVLSFDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G+Y++NP   + + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEYIINPNKAQLEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLRGHKAIQELIAFQEEIVAAVGKEKAKVELLQVNADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+ +    DL+ +  + EK  R    + +K+ + + + ++ +          ++  + E
Sbjct: 242 AEIVEKYNADLQKAVQVEEKKAREAATEAVKETVKADYEAKFAEDESLSTIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQ+  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDDEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIQ 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+GTV+I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDDEGTVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQVAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            A  SDV++ G+ V VK++  D++G++  SMK +     KP
Sbjct: 662 TANVSDVLELGEEVDVKVIKVDEKGRVDASMKALLPRPPKP 702


>gi|253583637|ref|ZP_04860835.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
           ATCC 27725]
 gi|251834209|gb|EES62772.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
           ATCC 27725]
          Length = 699

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/701 (44%), Positives = 446/701 (63%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   VE+E AGR L   TG+IARQS GAV+  YGETV+L+TV   +  + G DFFPLT
Sbjct: 1   MFDEKKVELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RE RP+ N  L +R+IDR IRP+F + + ++  ++  V  +
Sbjct: 61  VDYIEKFYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF-VS 179
           D +++P  + ++ +S ALMLS LPF GPV G  V Y NG+++LNP  +E + S     V+
Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVVGYKNGEFILNPTPEELETSELELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           G++DAV MVE  A +L E+ +L AI+F H   K +     + AK+  KE IV   ++   
Sbjct: 181 GSKDAVNMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKIVFVKEEVLP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---------SSEHSSWNEG 289
            +++ + +   E L+ +     K  R + +D L+++++  F           +      G
Sbjct: 241 LVKDFIDEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENYEGVEEEDIPEEVIG 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E    + D+  K+VR  +L  K R+DGR +  +R + A+ G+L   HGS++F RG+TQAI
Sbjct: 301 EFKGYYHDLMKKLVREAILYHKHRVDGRKTTEIRPLFAETGVLPIPHGSAMFTRGETQAI 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV TLGT+EDEQ VD L       F +HYNF P + GE  RMG+P RRE+GHG LA RA+
Sbjct: 361 VVTTLGTKEDEQLVDDLEKEYFKKFYLHYNFPPYSVGETGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA   R 
Sbjct: 481 GEEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALKQALDARN 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +S     L    PR+  M I  D+I  +IG GGK I+GI+E+TGA ++I D
Sbjct: 541 EILVVMNNAISAP-ADLRPNVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTGATIDISD 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I S     ++    ++ +     EV +IY G+VV +  FGAF+     ++GL+H+
Sbjct: 600 DGNVSIFSKDEEVLKETITLVNAFVKDVEVGEIYNGRVVNIAKFGAFMEILPGKEGLLHV 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERVA   DV+K GD   VK++   + GKI LS K +
Sbjct: 660 SEISNERVANVEDVLKVGDKFDVKVIST-ENGKISLSKKKI 699


>gi|237738330|ref|ZP_04568811.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420210|gb|EEO35257.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 699

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/701 (44%), Positives = 441/701 (62%), Gaps = 13/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD   V++E AGR L   TG+IARQS GAV+  YG+TV+L+TV   +  +   DFFPLT
Sbjct: 1   MFDERKVQMELAGRTLTFSTGKIARQSCGAVMVQYGDTVLLSTVNRSKEPRKENDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+ +RE +P+ N  L +R+IDR IRP+F   +  +  ++  V   
Sbjct: 61  VDYIEKFYAAGKFPGGFNKREGKPSTNATLTARLIDRPIRPMFPDGFNYDVHIVNTVFSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF-VS 179
           D +++P  + ++ +S ALMLS LPF GPV G  + Y NG+++LNP  +E + S     V+
Sbjct: 121 DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVIGYKNGEFILNPTPEELETSELELSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           GT++A+ MVE  AN+L E+ +L AI+F H   K + +     AK   KE +     +   
Sbjct: 181 GTREAINMVEAGANELDEETMLKAIMFAHENIKKICDFQEAFAKEVGKEKMEFVKPEVMP 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--------- 289
            ++  + +   E L+ +     K  R + +D L+++++  F  E+    E          
Sbjct: 241 LVKNFIDERGMERLQAAVLTLGKKNREEAVDSLEEELLETFKVENYGEGEEVEIPEDVLI 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E    + D+  K+VR  +L  K R+DGR +  +R + A+V  L   HGS++F RG+TQA+
Sbjct: 301 EFKGYYHDLMKKLVRDAILYHKHRVDGRKTTEIRPLFAEVNCLPIPHGSAMFTRGETQAV 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V+ TLGT+EDEQ VD L       F +HYNF P + GE  RMG+P RRE+GHG LA RA+
Sbjct: 361 VITTLGTKEDEQLVDDLEKEYYKKFYLHYNFPPYSVGETGRMGSPGRRELGHGSLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             V+P   +FPYT+R+VSEITES+GSSS A++CG SL+LM AGVPI + VAGIAMGL+K+
Sbjct: 421 KYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+F +L+DI G EDHLG MDFKVAGT +GITA+QMD+KI GI+E IM +AL+QA   R 
Sbjct: 481 GDEFTVLTDIMGLEDHLGDMDFKVAGTKNGITALQMDIKITGITEEIMRIALKQALDARN 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+  +      +    PR+  M IP D+I  +IG GGK I+GI++QTGA V+I+D
Sbjct: 541 EILELMNNTIPAPAP-IKSNVPRIYQMNIPTDKIAVLIGPGGKNIKGIIDQTGATVDIND 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V I     A +    +++ S     EV ++Y G+VV +  FGAF+     ++GL+H+
Sbjct: 600 DGKVSIFCKDEAALNETVKLVNSFVKDVEVGEVYSGKVVSIQKFGAFMEILPGKEGLLHV 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S++S ERV K  DV+K GD   VK++  D+ GKI LS K V
Sbjct: 660 SEISQERVEKVEDVLKVGDVFDVKVISTDN-GKISLSKKRV 699


>gi|291557792|emb|CBL34909.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
           V10Sc8a]
          Length = 705

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/694 (40%), Positives = 430/694 (61%), Gaps = 6/694 (0%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +  T +  +AGR L +ETG++   ++G+    YGETVV+  V      ++G DFFPL
Sbjct: 1   MFENYKTFKTTFAGRELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+ YAVGKIPGGYL+RE RP+E  IL SR++DR +RPLF K  +N+  +++ V+ 
Sbjct: 61  AVDYEEKLYAVGKIPGGYLKREGRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+ P +++M+ AS A+ +S +P+ GP+ G  V  ++G+ VL P   +  +  L L V
Sbjct: 121 VDPETQPEIIAMIGASIAVSISDIPWNGPIGGISVGLVDGEIVLMPDAKQRAKSDLQLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDF 237
           + ++  V+M+E  AN++ +D +L AI+ GH E  K +I  I ++     K      S + 
Sbjct: 181 ASSEKKVVMIEAGANEVDDDTMLKAIMAGHEEINKSLIPFIKQIQAEIGKPKFSFPSMEV 240

Query: 238 S-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
              L E +     E ++ +    +K VR +++  +K  + + F  ++       I     
Sbjct: 241 DHDLFEAIQNKYTEQVKFALDTDDKNVREERLQPIKDAIHAEFDEQYPD-KAAMIDECIY 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +Q  +VR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG 
Sbjct: 300 KLQKFIVRRWLLDEQKRVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGP 359

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D +   +   +M HYNF   + GE      P RREIGHG LA+RA+ PV+P  
Sbjct: 360 VSDSQKLDGIDEEETKRYMHHYNFPAYSVGETKASRGPGRREIGHGALAQRALEPVIPPV 419

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VSE+  S+GS+S A++CGS+L+LMDAGVPI  PVAGI+ GL+ +GD ++ +
Sbjct: 420 EEFPYAIRLVSEVLSSNGSTSQASICGSTLSLMDAGVPIKSPVAGISCGLITEGDRWMTM 479

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A  +  + R +IL+E+ 
Sbjct: 480 VDIQGLEDFFGDMDFKVGGTHKGITAIQMDLKIDGLTPEIIKDAFAKTHKARDYILDEIM 539

Query: 537 -KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R  + ++ P++    +P D+IR VIG GGKVI+ +      K++ID++G V I
Sbjct: 540 LKAIPEPRPTVNKYAPKMLNYKVPVDKIREVIGTGGKVIQKLCADFEVKIDIDEEGNVFI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
               L + +    MI++IT  PEV  IYKG+VV++M+FGAFV     +DG+VHIS+L   
Sbjct: 600 CGQDLEKAQNCVAMIKAITSPPEVGAIYKGKVVRIMNFGAFVEIAPGKDGMVHISELENR 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           RV K  DVV  GD + VK+L+ D++GKI+LS K 
Sbjct: 660 RVEKVEDVVSIGDEIIVKVLEIDNQGKIRLSRKA 693


>gi|146319581|ref|YP_001199293.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           05ZYH33]
 gi|253752584|ref|YP_003025725.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
 gi|253754410|ref|YP_003027551.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
 gi|253756344|ref|YP_003029484.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
           BM407]
 gi|187611303|sp|A4VXQ4|PNP_STRSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611308|sp|A4W401|PNP_STRS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145690387|gb|ABP90893.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus suis 05ZYH33]
 gi|251816873|emb|CAZ52520.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
 gi|251818808|emb|CAZ56648.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
           BM407]
 gi|251820656|emb|CAR47416.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
 gi|292559196|gb|ADE32197.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis GZ1]
 gi|319758995|gb|ADV70937.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           JS14]
          Length = 739

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/698 (40%), Positives = 438/698 (62%), Gaps = 8/698 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E  +AG+ L +ETG++A+Q++GAV+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y+NG+ ++NP   + + SL +L V+G +
Sbjct: 122 ASAPMAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLELTVAGNK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           DA+ MVE  A +LSE+V+L+A++ GH   + +++  +++     KE   ++  +   +L+
Sbjct: 182 DAINMVESGAKELSEEVMLEALLKGHAAIQELLDFQNQIVAAVGKEKADVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+     +DL+ +  + EK  R    + +++ +++ +  +++   E      ++  + E
Sbjct: 242 AEIVAAYNDDLKKAVQVEEKLAREDATNAVRETVIATYEEKYAEHEEFDRIMRDVHEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A+V  L   HGS LF RG TQA+ V+TL  
Sbjct: 302 LMEHTEVRRLITEDKVRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  F+ HYNF   + G   R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLDDEYKKRFLHHYNFPQYSVGSTGRYGAPGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++   +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EDFPYAIRLVAEVLESNGSSSQASITAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIDGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + E R  L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID+DG V I 
Sbjct: 542 ATIPEVRPDLAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S   A IE  +E+I  +    +V+++++ +VV++  FGAFV+     D LVH+S+++  R
Sbjct: 602 SPDRAAIERTKEIIAGLVREAKVDEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           V K  D+V+ GD V VK++  DD+G+I  SMK +    
Sbjct: 662 VNKPEDLVEVGDVVDVKVIKIDDKGRIDASMKALLPKP 699


>gi|283850795|ref|ZP_06368081.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           FW1012B]
 gi|283573718|gb|EFC21692.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           FW1012B]
          Length = 762

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/695 (44%), Positives = 446/695 (64%), Gaps = 7/695 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           FD   +E    G  + LETGR+A Q+DGAV    G TVVL T       ++   FFPL V
Sbjct: 5   FDPIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTACTQALAEEK-GFFPLVV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +YQE +YA G+IPG Y RRE  RP+E E+L+ R+IDR  RPLF K +++E Q+I  V+  
Sbjct: 64  DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178
           D +  P V+++ AAS AL +S +PF GP+ G +V YI+GQ+VLNP +        L+L  
Sbjct: 124 DGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           + ++DAV+MVE     +SED++ DA+ +GH   +P+++   ++ +   K  I        
Sbjct: 184 AASRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPAPN 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN--EGEIVSVF 295
            +LE  + Q  +  L+ +  I +K  R      +K+ +++            + +   V 
Sbjct: 244 EELEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMAAVVEAFPDQPTYKMKAGEVL 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ K++R ++ +  +R+DGRD+++VR I  QVG+L RTHGS+LF RG+T+A+ V TLG
Sbjct: 304 EAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ +++L+G     FM+HYNF P   GEV  +  PSRR+IGHG LA R++ PVLP 
Sbjct: 364 STGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPVLPG 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FP+T+R+VS++ ES+GSSSMA+VCG+SLALMDAGVPI +PVAGIAMGL+K+GDDF+I
Sbjct: 424 PEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDDFLI 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED +G MDFKVAGT  GIT +QMD+KI GI + +M  AL QAK  RLHIL  M
Sbjct: 484 LTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQAKEARLHILGRM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++VL+  R +L    P++ ++ I P++IR VIG GGK I+ I  +TGA ++I+D G + I
Sbjct: 544 AEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGASIDIEDTGKISI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +L  +E AR  +       +V   YKG+V K++D G  V      +GLVH+SQL  E
Sbjct: 604 FAPTLESMEKARARVEYYDQHADVGANYKGKVKKIIDCGVIVEILPGLEGLVHVSQLDIE 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV    DVVK G  + VK+L+ +  G+I+LS K V
Sbjct: 664 RVESPFDVVKMGQELEVKVLEQEPSGRIRLSRKAV 698


>gi|312277503|gb|ADQ62160.1| Polyribonucleotide nucleotidyltransferase [Streptococcus
           thermophilus ND03]
          Length = 741

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/700 (40%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E+ + GRPL +E G++A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY
Sbjct: 3   KQTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKIATA-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   + + S LDL V+GT+
Sbjct: 122 ASVPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           +A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++  +  + L+
Sbjct: 182 EAINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+  +  + L  +  + EK  R      +K+++++ +    +  ++ E     +V + E
Sbjct: 242 AEIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDDDKETILRDVVEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L   HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSV 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+++TG  ++ID++G V+I 
Sbjct: 542 SAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIDETGVTIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ + 
Sbjct: 602 SSDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKH 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVVK GD V VK++  D++G++  S+K +     K
Sbjct: 662 TEHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTLLPKPEK 701


>gi|315924496|ref|ZP_07920717.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622200|gb|EFV02160.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 693

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/688 (42%), Positives = 429/688 (62%), Gaps = 3/688 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +   E E AGRP ++E G +AR +  A +  YG+T +L  V   +  ++G DFFPL+V+Y
Sbjct: 1   MRVFETEIAGRPFRVEIGEVARLAKAAAMVRYGDTSLLCNVTVSKKPREGMDFFPLSVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+L+RE RP+   IL SR+IDR IRPLF K ++N+  V+  VM  + +
Sbjct: 61  EEKQYAVGKIPGGFLKREGRPSNQAILNSRLIDRPIRPLFPKGFRNDVHVVTMVMSVEHD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P +V M+ +S  L +S LPF+GP    QV  I+G++VLNP   + ++  + L V+GT+
Sbjct: 121 NAPELVGMLGSSIVLSISDLPFDGPTAAVQVGLIDGEFVLNPTAAQYEKSEMHLTVAGTR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           +AV+MVE  A+++ E  +LDAI++ H E K +I  I ++                  ++ 
Sbjct: 181 EAVMMVEAGADEIPEATMLDAILYAHKEIKKIISFIDQIVAEVGAPKADYKLYLPTEEMV 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E++  I   +  +    +   R + +D L +++  +F+  +   N  +I  V  +++ K
Sbjct: 241 TEITGYIGTRMHDAVRTEDAKERIESMDTLIEEVSEHFAEIYPD-NAADIDMVINNLKKK 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR+++LD  +R D R    VR ++ +V  + R HGS+LF RG+TQ   V TLG  ++ Q
Sbjct: 300 EVRSLILDDGIRPDNRGMTQVRPLAVKVDYIPRVHGSALFTRGETQVCSVATLGLLKEAQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L    +  +M +YNF   + GE      P RREIGHG LA RA+ PVLP    FPY
Sbjct: 360 TLDGLELESKKRYMHNYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEEDFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSE+  S+GS+S A+VCGSS+ALM AGVPI K VAG AMGL+K+ +   IL+DI G
Sbjct: 420 AIRVVSEVMSSNGSTSQASVCGSSMALMAAGVPIKKQVAGCAMGLIKEDEKLAILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT+ GITA+QMD+KI GI   I+  AL QA+ GRL IL  M+  +++
Sbjct: 480 MEDFLGDMDFKVAGTEDGITAIQMDIKIHGIDREILTKALNQAREGRLFILGVMNDAIAQ 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P +  M I P++IR+VIG GG+ I GI + T  K+ I++DGT+ IA++  A
Sbjct: 540 PREELSPYAPHITTMTIDPEKIRDVIGKGGETIIGIQDATDTKIEIEEDGTIYIAATDGA 599

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI  I    EV  +  G+VVK+M FGAFV   G++DGL+HIS+L+  RV    
Sbjct: 600 SSKKAHDMIFDIVREVEVGDVVTGKVVKIMKFGAFVDIPGSKDGLIHISKLANHRVENVE 659

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           DVV  GD V VK+ + D +G+I LS K 
Sbjct: 660 DVVSVGDMVTVKVTEIDAQGRINLSRKA 687


>gi|325681163|ref|ZP_08160693.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
 gi|324107085|gb|EGC01371.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
          Length = 704

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/701 (39%), Positives = 438/701 (62%), Gaps = 7/701 (0%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +  T E  +AGRP+ +ETG+    ++G+    YGETVV+A V   +  ++G DFFPL
Sbjct: 1   MFENARTFETTYAGRPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVG+IPG + +RE + ++  IL SR +DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDFEEKMYAVGRIPGSFTKREGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D ++SP +  M+A + A+ +S +P+ GPV    V Y++G+ VLNP L++  +  L+L V
Sbjct: 121 VDPDNSPEITGMIATAIAISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNKLNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +G+ + ++M+E  A ++ +D++L AI  GH E K ++E I  +     K     +S +  
Sbjct: 181 AGSAEKIVMIEAGAEEIPDDLMLKAIETGHAEIKKMVEFIKGIQAEIGKPKFEFESMEVD 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L +E+  M+ ED++ +    +K VR  ++  +   +   +  ++       +  V   
Sbjct: 241 HDLFDEIEAMVGEDVKKALDTDDKNVRDARMQPIYDAVHEKYDEQYPDQG-AMLEEVLYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q K+VR  + +   R+DGR  + +R ++A+VG+L R HGS +F RG TQ + V TLG  
Sbjct: 300 LQKKIVRNWLYE-GKRVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTVCTLGPI 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L       +M  YNF   + GE      P RREIGHG LA RA+ PVLP   
Sbjct: 359 SDAQKLDGLDEETSKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSVE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIIL 476
           +FPY +R VSE+  S+GS+S  ++CGS+LALMDAGVPI +PVAGI+ GL+ K+   ++ +
Sbjct: 419 EFPYAIRCVSEVLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKEDGSWMTM 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            DI G ED  G MDFKV GT +GITA+Q+D+K+ G++ +I+  A ++ ++ R++IL+E+ 
Sbjct: 479 VDIQGLEDFYGDMDFKVGGTKNGITAIQVDIKVDGLTMDIIASAFEKTRKARMYILDEIM 538

Query: 537 -KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R ++ ++ P++    +P D+IR VIG GGKVI+ I  +   K++I++DG+V +
Sbjct: 539 LKAIPEVRPEVSKWAPKMLTTKVPVDKIREVIGSGGKVIQKISAECEVKIDINEDGSVFV 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +     + + A  +I +I + PE+  IYKG+VV++M+FGAFV     +DGLVHIS+L  +
Sbjct: 599 SGLDKEKAQQAINIINTIANDPEIGAIYKGKVVRIMNFGAFVEIAPGKDGLVHISKLDKQ 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RV K  DVV  GD + VK+++ DD+G+I LS K    +  K
Sbjct: 659 RVEKVEDVVSIGDEIVVKVMEIDDQGRINLSRKDALADLAK 699


>gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
 gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
          Length = 702

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/685 (43%), Positives = 443/685 (64%), Gaps = 5/685 (0%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           + +GR LK+  G++A Q++G+ L   GETVVL      +  ++G DFFPL+ +++E+ Y+
Sbjct: 8   DLSGRELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYS 67

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VGKIPGG+++RE RP+E  IL SR+IDR +RPLF + Y+N+ QVI   +  + ++ P ++
Sbjct: 68  VGKIPGGFIKREGRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPDIL 127

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
           +M+ +S AL +S +PF GP     V Y++G+YV+NP + + ++  L++ VSGT+DA++MV
Sbjct: 128 AMIGSSIALTISDIPFNGPTGSVNVGYVDGEYVINPTIAQREKSRLNITVSGTKDAIMMV 187

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEEMSQM 247
           E  A+ LSE+ VL+AI+F H E K +   I  + +   KE   VI  +    L   + + 
Sbjct: 188 EAGADILSEEEVLNAILFAHEEIKSICNFIETIREEVGKEKSEVIIKQRDEDLFNSIIEF 247

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            KE +  +   P K  R + +D + K++   F  ++    +GEI S  E +    VR ++
Sbjct: 248 SKEQIISALRTPNKMEREENLDKITKEIFEKFLPDYED-KKGEINSAIESVIVDEVRRLI 306

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +++ +R D R+ + VR IS + GLL RTHGS LF RG TQ + + TLG   + Q +D + 
Sbjct: 307 IEEGIRPDDRELDEVRKISCERGLLPRTHGSGLFTRGQTQVLTLTTLGAPGEVQVLDGVI 366

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 +M  YNF P + G+V  + +P RREIGHG LA RA+ PVLP   +FPYT+R+VS
Sbjct: 367 DEDDKRYMHQYNFPPFSVGDVRPLRSPGRREIGHGALAERALVPVLPSEEEFPYTMRLVS 426

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDH 485
           E+  S+GSSS A++CGS+L+L+DAGVPI   VAGIAMGL+KD   +   IL+DI G EDH
Sbjct: 427 EVLSSNGSSSQASICGSTLSLLDAGVPIKDSVAGIAMGLIKDEKTNKIAILTDIQGLEDH 486

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAGT  GITA+QMD+KI GIS  I+  AL++AKR RLHIL+ M+  ++    +
Sbjct: 487 FGDMDFKVAGTKDGITALQMDIKIDGISREILATALEKAKRARLHILSIMNDCIATPSEE 546

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           + ++ P++  M I P++IR VIG GGKVI  I+++TG K++  DDG + I + S    E 
Sbjct: 547 MSKYAPKIFTMQILPEKIREVIGPGGKVINKIIDETGVKIDTFDDGRIAITADSRKNGER 606

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A EMI  I    EV +IY G +  + +FGAFV     ++GL+HIS ++ ER+ K  D+ K
Sbjct: 607 AIEMINEIVKEIEVGEIYSGVITTITNFGAFVELIKGKEGLLHISNMTHERLNKVEDLFK 666

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            GD V VK+++ D++GKIKLS K +
Sbjct: 667 VGDVVEVKVIEIDNQGKIKLSRKAL 691


>gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae
           MTU5]
 gi|187611281|sp|A8F1P3|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae
           MTU5]
          Length = 745

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/696 (47%), Positives = 482/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L TVV     K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCTVVVANKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E    +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPEIPVDILAIIGASAALSLSPAPYLEMVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + +     + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M  PSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKVPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV I +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICEISGAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|322374185|ref|ZP_08048718.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
 gi|321276890|gb|EFX53962.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
          Length = 745

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/700 (40%), Positives = 434/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E+ +AGRPL +E G++A+Q++GAV+  YG+T VL+T V  + +    DFFPL VNY
Sbjct: 3   KQTFEMTFAGRPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATA-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   + + S LDL V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSHLDLTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++  +  + L+
Sbjct: 182 EAINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDADLK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+     + L  +  + EK  R      +K+++++ +    +  ++ +     +  + E
Sbjct: 242 AEIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLASYQERFAEDDDKDTILRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSV 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPAILEEALAQAKVARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R  L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I 
Sbjct: 542 STIAEPRPGLAPTAPKIDSIQIPVDKIKIVIGKGGETIDKIIAETGVTIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ +R
Sbjct: 602 SSDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVVK GD V VK++  D++G++  S+K +     K
Sbjct: 662 TEHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTLLPKPEK 701


>gi|55820183|ref|YP_138625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus LMG 18311]
 gi|55822071|ref|YP_140512.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus CNRZ1066]
 gi|81559948|sp|Q5M1W9|PNP_STRT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81561123|sp|Q5M6F9|PNP_STRT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|55736168|gb|AAV59810.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
           LMG 18311]
 gi|55738056|gb|AAV61697.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
           CNRZ1066]
          Length = 741

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/700 (40%), Positives = 432/700 (61%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E+ + GRPL +E G++A+Q++GAV+  YG+T VL+  V  + +    +FFPL VNY
Sbjct: 3   KQTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATA-NFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   + + S LDL V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           +A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++  +  + L+
Sbjct: 182 EAINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+  +  + L  +  + EK  R      +K+++++ +    +   + E     +V + E
Sbjct: 242 AEIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDEDKETILRDVVEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L   HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSV 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I 
Sbjct: 542 SAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ + 
Sbjct: 602 SSDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKH 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVVK GD V VK++  D++G++  S+K +     K
Sbjct: 662 TEHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTLLPKPEK 701


>gi|268611199|ref|ZP_06144926.1| polynucleotide phosphorylase/polyadenylase [Ruminococcus
           flavefaciens FD-1]
          Length = 704

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/695 (40%), Positives = 425/695 (61%), Gaps = 8/695 (1%)

Query: 1   MFDVH-TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + T E  +AGRPL +ETG+    S+G+    YGETVV+A V      ++G DFFPL
Sbjct: 1   MFENYRTFETTYAGRPLVVETGKTCGLSNGSCWVRYGETVVMANVTASAKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+Y+ER Y+VGKIPG + +RE +PTE  IL SR +DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDYEERLYSVGKIPGSFTKREGKPTEKAILTSRCVDRPIRPLFPKDMRNDVSVVMTVLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            + ++SP +  M+A S A+ +S +P+ GP+ G  V  ++G+ VLNP L++  +  L L V
Sbjct: 121 VEPDNSPEIAGMIATSIAISISDIPWNGPISGINVGLVDGEIVLNPTLEQRAKTDLVLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT + ++M+E  AN++ ED +L+AI+ GH E K ++  I  +     K     +S +  
Sbjct: 181 AGTAEKIVMIEAGANEVPEDTMLEAIMKGHEEIKKMVAFIKDIQSQIGKPKFAFESMEVD 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             + + + +   E ++ +    +K VR +++  +   + + F  ++       I      
Sbjct: 241 HDMFDAIEEFAAERVKFALDTNDKNVRDERLAPIVDDIHAKFDEQYPEQ-IAMIDECIYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q K+VR  + +   R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG  
Sbjct: 300 LQKKIVRNWLYE-GKRVDGRGIDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLTIATLGPV 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L   +   +M  YNF   + GE      P RREIGHG LA RA+ PV+P   
Sbjct: 359 SDAQRIDGLDEEESKRYMHQYNFPSYSVGETKPSRGPGRREIGHGALAERALAPVIPSVD 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFII 475
           +FPY LR+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+   D D+F+ 
Sbjct: 419 EFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPDSDEFMT 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           + DI G ED  G MDFKV GT  GITA+Q+D+K+ G++  I+  A ++ ++ RL+IL+E+
Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIKEAFEKTRKARLYILDEV 538

Query: 536 S-KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
             K + E R  + ++ P++    IP D+IR VIG GGK I+ I      K++I DDG V 
Sbjct: 539 MLKAIPEPRKTVNKYAPKMLQTKIPADKIREVIGSGGKTIQKISADCDVKIDISDDGNVF 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I+         A +++ +I + PEV  IY+G+VV++MDFGAFV      DGLVHIS+L  
Sbjct: 599 ISGIDAGNSNKALQIVETIANGPEVGAIYRGKVVRIMDFGAFVEIVPGVDGLVHISKLDK 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            RV K  D+V  GD + VK+ + D +G+I LS K 
Sbjct: 659 SRVEKVEDIVSIGDEIVVKVTEIDRQGRINLSRKD 693


>gi|302874669|ref|YP_003843302.1| polyribonucleotide nucleotidyltransferase [Clostridium
           cellulovorans 743B]
 gi|307690717|ref|ZP_07633163.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           cellulovorans 743B]
 gi|302577526|gb|ADL51538.1| polyribonucleotide nucleotidyltransferase [Clostridium
           cellulovorans 743B]
          Length = 705

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/696 (42%), Positives = 452/696 (64%), Gaps = 5/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H +E   AGR LK+E G+I   S+ A+L +YG+TVV+       + +DG DFFPL++ Y+
Sbjct: 3   HILETTVAGRTLKVEFGKIGMLSNCAMLISYGDTVVMVNANASENPRDGIDFFPLSIEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE RP+E  IL +R IDR IRPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERFYSVGKIPGGFIKREGRPSEKSILNARAIDRPIRPLFPKGYRNDVQVVCTVLSVEQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P++++M  AS  L+LS +PF  PV    V  I+G +VLNP ++E +  ++DL +  T++
Sbjct: 123 LPNILAMNGASLGLLLSSIPFVDPVATVSVGLIDGNFVLNPTVEERKLSTMDLTICATRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+M+E   +++ E+V++ AI +G  +C+P+I+   +      KE +        + LE+
Sbjct: 183 RVMMIEASGDEIPEEVMISAINYGFEQCQPIIKFQEEARSKFGKEKVTPTLYHVDETLEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+++   E L+ + +I +K  R +++  +K+ + S F+ ++    +G+I  V  + Q ++
Sbjct: 243 EVTEYSFEMLKEAMYITDKDQRNERLKVIKEDINSAFAEKYPDA-KGDIGEVIYNTQKEI 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR +ML+KK R DGR  + VR+I  +V LL RTHG+ LF RG TQ + V TLG   D Q 
Sbjct: 302 VRDMMLNKKRRPDGRAFDEVRNIGCEVDLLPRTHGTGLFTRGLTQVLTVATLGAIGDVQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   +M HYNF   + GEV  +  P RREIGHG LA +A+ P++P   +FPYT
Sbjct: 362 IDGLGEEESKRYMHHYNFPAYSVGEVKPLRGPGRREIGHGALAEKALVPLIPSEEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+ + D     +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITNEDLTQEGVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT  GITA+Q+D KI G+S+ ++  A++ A++ RLHIL ++ + + 
Sbjct: 482 GIEDFFGDMDFKVAGTTKGITAIQVDTKIKGLSDYVIRTAIEDARKARLHILEKIDECIE 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L ++ PR+  M+I P++IR+VIG GGKVI  I+ +TG K++I +DG + I S+  
Sbjct: 542 KPREELSQYAPRIITMSIDPEKIRDVIGAGGKVINKIIAETGVKIDIKEDGKIFIMSADS 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A +MI  +T   +V +IY G+V K+  FGAFV     ++GLVHIS+L   RV K 
Sbjct: 602 VGANKAVKMIDDLTREIKVGEIYLGKVTKITTFGAFVEVLPNKEGLVHISKLDVTRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            D+V  GD + VK+ + D++G++ LS K    +T +
Sbjct: 662 EDIVSVGDEILVKVTEIDNQGRVNLSRKDALADTEE 697


>gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
 gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
          Length = 722

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/690 (41%), Positives = 442/690 (64%), Gaps = 4/690 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  T +  +AGR L +ETG+ +  ++G+    YGETVV+A V      ++G DFFPL+V+
Sbjct: 23  NHRTFQTMFAGRELIVETGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVD 82

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGKIPG +L+RESRP+E  IL SR+IDR IRPLF K  +N+  V+  V+  D+
Sbjct: 83  YEEKLYAVGKIPGSFLKRESRPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVLATDV 142

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           ++SP VV+M A + A+ +S +P+ GPV    V  ++G++VLNP ++E  +  LDL V+ +
Sbjct: 143 DNSPEVVAMTAVAIAISISDIPWNGPVASVSVGLVDGKFVLNPNIEERAKSDLDLTVASS 202

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            + ++M+E  AN++ +  +LDAI+ GH E K +I+ I+++     K  I  +S +   +L
Sbjct: 203 GEKIVMIEAGANEVDDKTMLDAIMTGHEELKHIIDFINEIKAEVGKPKIEFESMEVPTEL 262

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + + +M  + ++ +    +K VR +++  +   + + F   +       I      +Q 
Sbjct: 263 FDAIKEMAIDRVKEALDTDDKTVRDERLLPIIGDIHAKFDELYPEQIPV-IDECIYKLQK 321

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  +LD++ R+DGR  + +R ++A+VGLL R HGS LF RG TQ + + TLG   DE
Sbjct: 322 YVVRRWLLDEQKRVDGRGMDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGPVSDE 381

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +       +M +YNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 382 QRLDGIDENTFKRYMHNYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFP 441

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+ +GD F+ + DI 
Sbjct: 442 YAIRVVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGDRFMTMVDIQ 501

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS-KVL 539
           G ED  G MDFKV GT  GITA+Q+D+KI G++  I+  A ++ ++ RL+IL+E+  K L
Sbjct: 502 GLEDFFGDMDFKVGGTHKGITAIQVDIKIDGLTPEIIAEAFEKTRKARLYILDEIMLKAL 561

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            + R ++ ++ P++    IP D+IR+VIG GGKVI+ I  +   K++I++DG V I    
Sbjct: 562 HKPREEVSKYAPKMLQTVIPIDKIRDVIGTGGKVIQKICAEYDVKIDINEDGHVFILGVE 621

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           +A  ++A  ++ +I   PE+  IYKG+V ++++FGAFV     ++GLVHIS+L   RV K
Sbjct: 622 MANAKSALAVVETIAKDPEIGAIYKGKVTRILNFGAFVEIAPGKEGLVHISKLDFHRVEK 681

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             DVV EGD V VK+++ DD+G+I LS K 
Sbjct: 682 VQDVVNEGDEVVVKVVEIDDQGRINLSRKD 711


>gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 695

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/696 (46%), Positives = 474/696 (68%), Gaps = 7/696 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            ++ T         + LETGRIARQ+ GAVLA+  +T VL TVV  +  + GQDFFPL+V
Sbjct: 1   MNIKTKSFTMGKHIVTLETGRIARQAHGAVLASMDDTQVLVTVVSSKETRPGQDFFPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+TY+ GKIPG +L+RE+RP+E E L SR+IDR+IRPLF   + NE QV+I V+  +
Sbjct: 61  DYIEKTYSTGKIPGSFLKREARPSEKETLTSRLIDRTIRPLFPNGFMNEIQVLITVVSAN 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            E +P ++SM+  SAAL +SG+PF  P+ G++V Y NG+Y+LNP   +     LD+ V+G
Sbjct: 121 SEVNPDIISMLGVSAALSISGVPFSRPIGGSRVGYSNGEYILNPTYIELTNSDLDMVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T +AVLMVE EAN+LSE+++L A+++ H + +  I  I++       +     +   ++ 
Sbjct: 181 TDEAVLMVESEANELSEEIMLGAVVYAHEQYQVAITNIAEFTTEVGMQKWDWIAPITNEV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDI 298
           L  ++     +++  +  I EK  R  +ID+++   +    +E+ + N   E+   F+++
Sbjct: 241 LLSDIKSKFGKEINKAYQIKEKLDRHAKIDNIRMAAIEALENENENGNSAEEVSKYFKEV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   VR  +L+   R+DGR++ETVR++  + G+L+ THGS+LF RG+TQA+VV TLG + 
Sbjct: 301 EKSTVRERILNNDSRIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKS 360

Query: 359 DEQYVDSLSGTQRND--FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           D Q ++ L   +R +  F++HYNF P   GE  R+    RREIGHG LARR I   LP  
Sbjct: 361 DAQLIEKLESPERQNNYFLLHYNFPPYCVGETGRLATIKRREIGHGHLARRGITACLPSI 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA+VCGSSL+LMDAGVPI  P+AGIAMGLVK+ D F +L
Sbjct: 421 EEFPYTVRVVSEITESNGSSSMASVCGSSLSLMDAGVPIKAPIAGIAMGLVKENDRFTVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAGT  G+ A+QMD+KI  I+  IM +AL+QAK  RL+IL +M+
Sbjct: 481 TDILGDEDHLGDMDFKVAGTSRGVNALQMDIKIQSITHEIMEIALKQAKEARLNILGQMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +V+ E      + TP+  I+ I  D+IR++IG GG+ I+GI+  + A +++DD G V I 
Sbjct: 541 QVICEPNTS-NKNTPKTTIIKIKTDKIRDLIGRGGETIKGIISTSCASIDVDDSGNVNIF 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S++    + A +M++ +T +PEVNK+Y G+VVK+++FGAF++    +DGL+HIS++S ER
Sbjct: 600 SNNQKSFDTAVQMVKDVTAIPEVNKVYTGKVVKIVEFGAFINIMPNQDGLLHISEISHER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V K  D ++EGD + VK++  D RG+IKLS KV+ +
Sbjct: 660 VEKVKDHIREGDKIDVKVIGLD-RGRIKLSRKVLLE 694


>gi|269961984|ref|ZP_06176339.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
 gi|269833307|gb|EEZ87411.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
          Length = 660

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/658 (49%), Positives = 454/658 (68%), Gaps = 3/658 (0%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+   V   ++    + LETG IARQ+  AV+ T  +T V  +VV  +   +GQDFFPL
Sbjct: 1   MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNYQERTYA GKIPGG+ +RE RP+E E L +R+IDR IRPLF   +KNE QVI  V+ 
Sbjct: 61  TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            + +  P +V+M+  SAAL +SG+PF GP+  A+V +I+GQ VLNP   E + S LDL V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +GT+ AVLMVE EA+ L+E+ +L A+++GH++ + VI AI++ A   A      +  ++ 
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVYGHDQQQTVINAINEFAAEVATPAWDWVAPEEN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + L  +++++ +  L  +  I EK  R  +I ++  ++     +E    N  EI ++F D
Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  VVR  ++    R+DGR+ + VR +  + G+L RTHGSSLF RG+TQA+V  TLGT+
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L+G +++ F++HYNF P   GE   +G+P RREIGHG+LA+R I  V+P   
Sbjct: 361 RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GDDF++LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT++GITA+QMD+KI GI++ IM +AL QA+  R HIL+ M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S +R  + EF PR+  M I  ++I++VIG GG VIR + E+TG  + I+DDGT+KIA+
Sbjct: 541 AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +  A  + A   I  IT   EV +IY G+V ++ DFGAFV     +DGLVHISQ++ +
Sbjct: 601 TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIARK 658


>gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 703

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/695 (42%), Positives = 450/695 (64%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +   +E    G P  +ETG  A+Q++GAV+   G+T VL   V     +   DF PLTV
Sbjct: 1   MEEIKIETVVNGAPYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+ YA GKIPGG+++RE +P+E EIL++R IDR IRPLF K + N+  +    +  D
Sbjct: 61  EYREKYYAYGKIPGGFVKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            +  P V+ +V ASAAL +S +PFEGP+ G +V  ++GQ+++NP   +  +  L++ V+G
Sbjct: 121 DQYDPDVLGIVGASAALHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           ++DA++MVE  A ++ E+V+L+A++FGH E K +IE   +L     KE I I   +   L
Sbjct: 181 SKDAIVMVEGGAKEVPEEVILEAMLFGHQEIKKLIELQEELRAKYGKEKIEIPIDEEEIL 240

Query: 241 -EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
            +E+  ++    ++ +  I +K  R KQI+ + +++ +    E       +   V++D+ 
Sbjct: 241 LKEKFKELAYVRIKEAFNISDKKERNKQINAIFEEIKTTL--EIPEEKVKKASFVYKDVV 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + V+R ++L + +R+DGR  E +R I  +VG+  R HGS++F RG TQA V VTLG+  +
Sbjct: 299 SNVMRDLVLYENIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSE 358

Query: 360 EQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q  +S+  G     FM+HYNF P +TGE       SRREIGHG LA RA+ P++P   +
Sbjct: 359 GQIEESIEAGETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VS+I ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K  D F++LSD
Sbjct: 419 FPYVIRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  G+T++QMD+K+ G++  I+  AL+QA+ GR +IL+ M + 
Sbjct: 479 ILGDEDHLGDMDFKVAGTRDGVTSIQMDIKVKGLTREILQKALEQAREGRNYILDLMYQA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E R +L  + P V  + + P++I  +IG  GK I+ I+E+TG K+++D  G VKI ++
Sbjct: 539 IPEPRKELSPYAPTVTTLRVLPEKISVIIGPAGKNIKKIIEETGVKIDLDPTGLVKIYAT 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S    E A +MI  +    E+ ++Y G+V +V D+GAFV     +  L+H+SQ+S+ER+ 
Sbjct: 599 SKIAAEKAIDMINQLIMDIELGEVYLGKVTRVEDYGAFVELMPGKLSLLHVSQISSERLK 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              DVVK GD + VK+ + DD+G+IK+S+K V +N
Sbjct: 659 SAKDVVKVGDVLKVKVSEIDDQGRIKVSLKDVPEN 693


>gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123747829|sp|Q493T3|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 699

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/696 (46%), Positives = 470/696 (67%), Gaps = 4/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M D    + ++    + L+ G IARQ++ AV+ +  +T VL TVV    ++  QDFFPL 
Sbjct: 1   MLDPIIHKFKYGQHTVILDIGTIARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLV 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA GK PGG+ RRE RP+ENE L SR+IDR IRPLF K + N+ QV+  V+  
Sbjct: 61  VNYQERTYAAGKFPGGFFRREGRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + + +P +V+++  SAAL LS +PF GP+  A+V YI  QYVLNP   E   S LDL +S
Sbjct: 121 NPQVNPDIVAIIGVSAALSLSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLVIS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
           GT+  +LMVE E+  LSE  +LDAIIFGH + + VI  I+KL K   K     + K+ + 
Sbjct: 181 GTESNILMVESESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKVGKTKYSWNEKEVNI 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFE 296
            L+  +S++ +   +      +K  R  Q+D +KK +V    +  +H++ +E EI+ +  
Sbjct: 241 SLKTYLSELYESRAQDIYCFFDKKERHAQVDSIKKDIVKTVLNSYQHAAVDEKEIMYLLN 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++A+ +R  +L  K+R+DGR  +T+R I  + G+L RTHGS+LF RGDTQA+V VTLGT
Sbjct: 301 YLEAQSIRYRILTNKLRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L+G + + F++HYNF P   GE+  +GAP RREIGHGRLA+R +  V+P  
Sbjct: 361 ERDAQNIDGLTGIRVDRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGMLAVMPNA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+VSEITES+GSSSMA++CG+SLALMDAGVPI   VAG+AMGL+K+G+DF++L
Sbjct: 421 NEFPYTIRVVSEITESNGSSSMASICGTSLALMDAGVPIKAAVAGVAMGLIKEGNDFVVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI  DEDH+G MDFKV+G+  GITA+QMD+K  GI+ +I+ +AL++AK  RL IL+ M 
Sbjct: 481 SDIVSDEDHIGDMDFKVSGSRQGITALQMDIKTDGITYDIINIALKKAKNARLQILDVME 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +++     ++ +F PR+  + + PD+I++VIG GG VIR + E+T   ++I+D+G +KI 
Sbjct: 541 QIIKFPNQEISKFAPRIYSIKVNPDKIKDVIGKGGSVIRSLTEETNTIIDIEDNGIIKIV 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +    + + A   I  IT   E+  +Y G+V  +++FGAFV     ++GLVHISQ+S  R
Sbjct: 601 ALDYDKAKQAIRRINDITANVEIGAVYTGKVSHIVEFGAFVTILSGKEGLVHISQISERR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           + K +D +K G  V VK+L+ D +G+I+LSMK V Q
Sbjct: 661 INKVTDYLKLGQKVLVKVLEIDRQGRIRLSMKGVHQ 696


>gi|225871265|ref|YP_002747212.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. equi 4047]
 gi|254782736|sp|C0M913|PNP_STRE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225700669|emb|CAW95251.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. equi 4047]
          Length = 714

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/701 (40%), Positives = 441/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A++++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKRANGATVVRYGESTVLTAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M+ +S AL +S +PF GP+ G QV Y+ G++++NP   + + SL +L V+GT+
Sbjct: 122 ASAPMAAMLGSSLALSISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+ MVE  A +L E ++L+A++ GH   + +I    ++     KE   ++    +  L+
Sbjct: 182 DAINMVESGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+ +    DL+ +  + EK  R    + +K+++++ +   +++  E      ++  + E
Sbjct: 242 AEIIETYNADLQQAIQVEEKKAREAATEAVKERVIAAYEERYAADEEHDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R ++A++  L R HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGDTQIIDGLEPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++C  +LALM AGVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EAFPYAIRLVAEVLESNGSSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRQGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQDAINRAKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWSR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
               SDV++ G+ V VK++  DD+G+I  SMK +     KP
Sbjct: 662 TTNVSDVLEIGEEVDVKVIKVDDKGRIDASMKALVPRPPKP 702


>gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii
           L2-63]
          Length = 739

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/696 (40%), Positives = 432/696 (62%), Gaps = 8/696 (1%)

Query: 2   FDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           FD + V E E+AGRPLK+ETG++ + ++GA L  YG+T V   V      ++G DFFPL+
Sbjct: 7   FDKYRVFETEFAGRPLKVETGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLS 66

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+ YAVGKIPG YL+RE RP+E  IL SR+IDR IRPLF K  +N+  ++  VM  
Sbjct: 67  VDYEEKMYAVGKIPGSYLKREGRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSV 126

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D +  P +V+M+ AS A+ +S +P+ GP+ G  V  I+G+Y++NP  ++ +   +   V+
Sbjct: 127 DPDCQPEIVAMIGASIAISISDVPWNGPISGCSVGMIDGEYIINPTEEQRKVSQMATTVA 186

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            T   + M+E  AN +S+D + +AI+ GH   + +I  I ++     K      S +   
Sbjct: 187 STSTRIAMIEAGANCVSDDDMYNAIMAGHEANQKIISFIEEIKAEIGKPKFEFASLEPDH 246

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + E +    +ED++V+    +K +R +++  + + + + F   +   +E  I       
Sbjct: 247 DMFEAIKAFAEEDVKVALDTDDKRIRDERLKPIYEAVHAKFDEIYPE-SEALIDECLYKT 305

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q  +VR  +LD++ R+DGR  + +R ++++VG++ R HGS +F RG TQ + + TLG   
Sbjct: 306 QKFIVRRWLLDEQKRVDGRGMDDIRPLASEVGVIPRVHGSGMFTRGQTQVLTIATLGPVS 365

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D+Q +D + G     ++ HYNF   + GE      P RREIGHG LA RA+ PV+P   +
Sbjct: 366 DKQLLDGIDGETEKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPSVEE 425

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY LR+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+ +GD ++ + D
Sbjct: 426 FPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGDRWMTMVD 485

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS-K 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  ++  AL +  + R +IL+E+  K
Sbjct: 486 IQGLEDFFGDMDFKVAGTHDGITAIQMDLKISGLTPEMVKEALAKTHKARNYILDEVMLK 545

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVK 594
            ++E R +L ++ P++    IP D+I  VIG  GKVI+ I  +   KV+I++D   G V 
Sbjct: 546 AIAEPREELSKYAPKMFTTTIPADKISEVIGKSGKVIKEIQAECEVKVDIEEDGELGQVF 605

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           ++     + + A E+I +I   PE   +Y G+V ++MDFGAFV     ++GLVHISQL  
Sbjct: 606 VSGIDSDKCKRAIEIINTIAVDPEPGAMYLGKVTRIMDFGAFVEIAPGKEGLVHISQLDV 665

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +R    +DVV  GD + VK+++ DD+G++ LS + V
Sbjct: 666 KRTENVTDVVNVGDIIRVKVMEIDDKGRLNLSRRQV 701


>gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis
           URRWXCal2]
 gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis
           URRWXCal2]
          Length = 747

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/696 (47%), Positives = 484/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V  +  K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYATGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ L+E+ +L+A+ FG    +PVI+ I +LA+   K  + +     + 
Sbjct: 181 GTSDSVMMVESEAHLLAEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMTVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDG+V + +
Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 710

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/695 (45%), Positives = 478/695 (68%), Gaps = 12/695 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE+E  G+ L L+TG  A+Q++G+VLA YG+T VL TVV +++ K+G DF PLT++YQE+
Sbjct: 3   VELEIKGKKLVLQTGIFAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            Y+ GKIPGG+ +RE +PT+ EIL+SR+IDR +RPLF   +  ETQ I +V+ +  E+  
Sbjct: 63  AYSAGKIPGGFFKREGKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDENIA 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            ++S++  S+AL +S +PF GPV   +V  +  +++LNP  DE + S L+L V+GT++AV
Sbjct: 123 DILSIIGISSALTISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSILNLVVAGTEEAV 182

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEEEM 244
            MVE  A + SE+ +++A+ F H   K +I    KL ++  K    I S +   ++++ +
Sbjct: 183 TMVEGGAAECSEETLVEALKFAHTHIKKIIALQKKLQQLSGKPKREIISLNGDEEIQKAI 242

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------SSWNEGEIVSVF 295
             +I   +  + F+P+K  R + +D+L  + +   ++E                EI + F
Sbjct: 243 LNIIGGKIENALFLPKKVERQQALDELLNECLQNLNTEEFRQKLYGNFDKDISLEITNAF 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +  K +R  ++ K +R DGR S+ +R I+  +G+L R HGS+LF RG+TQA+V  TLG
Sbjct: 303 DKVIKKFMRESIVKKGIRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ VDSL G     FM+HYNFLP + GEV  + AP RREIGHG LA RA+  V+P 
Sbjct: 363 TSEDEQKVDSLEGEIFKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYLAERALSYVIPS 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VS+I ES+GSSSMATVCG++L+LMDAGVPI  PVAG+AMGL+K+GD  ++
Sbjct: 423 KDEFPYTIRVVSDILESNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKEGDKTVV 482

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDH G MDFKVAGT+ GITA QMD+KI GIS  I   AL+QAK+ RL IL +M
Sbjct: 483 LTDILGMEDHYGDMDFKVAGTEKGITAFQMDVKISGISYEIFKKALKQAKQARLFILKKM 542

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVK 594
           ++ +SE + +L  + PR+  + + P++IR++IG GGKVI+GI+E+TG K++I+D +G VK
Sbjct: 543 AETISEPKKELSLYAPRIYKIQVKPEKIRDIIGTGGKVIKGIIEETGVKIDIEDKEGIVK 602

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IASS+ +  + A E+I+ IT   E+ +IY G+V +++DFGAFV      +GL+HISQ++ 
Sbjct: 603 IASSNESAAQKAIEIIKGITQEAELGRIYMGKVTRIVDFGAFVEIMPGVEGLLHISQIAD 662

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +R+ K S+V+K G+ + VK+++ D+ G+++LS K 
Sbjct: 663 KRIQKVSEVLKTGEQIPVKVIEIDELGRVRLSRKE 697


>gi|157825781|ref|YP_001493501.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
 gi|187611278|sp|A8GNL8|PNP_RICAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157799739|gb|ABV74993.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
          Length = 747

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/696 (46%), Positives = 477/696 (68%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L   V     K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCAAVVANKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V   V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  I+G++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLIDGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EAN LSE+ +L+A+ FG    +P+I+ I +LAK   K    +     + 
Sbjct: 181 GTADSVMMVESEANLLSEEQMLEAVKFGFESFQPIIKIIKELAKEAKKPKFQMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  ++++ +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIKQAFAIKSKQERSTNLDLIHEKVLTHFVSDIENKKYSNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM+ Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQLVDSLDGEYKERFMLDYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY +R+V+E TES+GSSSMATVC SSLALM AGVPI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYAIRVVAETTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM  AL+QA+ GRLHIL++M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKAALEQARLGRLHILDQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++S+   +LG+  P    + I  D+IR+VIG GGKVI+ I E + AK++I DDGTV + +
Sbjct: 541 IISKPNSKLGKNVPSTTTIKIDKDKIRDVIGPGGKVIKEICETSDAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS+++ ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGTKDGFVHISEIAEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVGSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|15673837|ref|NP_268012.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|81537531|sp|Q9CEI6|PNP_LACLA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|12724886|gb|AAK05953.1|AE006415_8 polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 773

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/700 (41%), Positives = 441/700 (63%), Gaps = 11/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      +      DFFPL VNY
Sbjct: 3   KETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMA--TGDFFPLQVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 61  EEKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +S  V +M  +S AL +S +PF+ P+ G +V YI+G+Y++NP + E +  SL+L V+G  
Sbjct: 121 ASGRVAAMFGSSLALAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNI 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++       L+
Sbjct: 181 NAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLK 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  I EK  R      +K+ ++S +S+++ +         ++  + E
Sbjct: 241 AEVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILE 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTL 354
            ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL
Sbjct: 301 GMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP
Sbjct: 361 APMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ 
Sbjct: 421 SLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYT 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ 
Sbjct: 481 VLTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDV 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           +   +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   
Sbjct: 541 IEATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCS 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS  A I+ A+E+I  +    +V +IY  +VV++  FGAFV+  G +D +VHIS+++ 
Sbjct: 601 IFSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAW 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            R     DVVK GDTV VK++  DD+G++  SM+ + +  
Sbjct: 661 ARTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRALVEKP 700


>gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. Iowa]
 gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii
           str. Iowa]
          Length = 748

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/696 (47%), Positives = 482/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E +P++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  +  K  R   +D + +K+ ++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAMKSKQERSTNLDLITEKVFTHFVSDIENKKYSHYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESGILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTGEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|222152456|ref|YP_002561631.1| polynucleotide phosphorylase/polyadenylase [Streptococcus uberis
           0140J]
 gi|254782739|sp|B9DTE3|PNP_STRU0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222113267|emb|CAR40790.1| polyribonucleotide nucleotidyltransferase [Streptococcus uberis
           0140J]
          Length = 732

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/694 (40%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFSTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP   + + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKAQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEEIVAAVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R    + +K+ + + + ++ +          ++  + E
Sbjct: 242 AEIVAKYNADLQKAVQVEEKKAREAATEAVKETVKAEYEAKFAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + AQ+  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRKVDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L    +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGDTQIIDGLDDEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIEGITPQILEEALAQAKKARFEILDLIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +   R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V+I 
Sbjct: 542 TTIPAPRPELAPTAPKIDTIQIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIITSLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  DD+G++  SMK +
Sbjct: 662 TANVSDVLEVGEEVDVKVIKVDDKGRVDASMKAL 695


>gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str.
           Malish 7]
 gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str.
           Malish 7]
          Length = 749

 Score =  755 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/696 (47%), Positives = 482/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGK+I+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
 gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
          Length = 716

 Score =  755 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/702 (40%), Positives = 434/702 (61%), Gaps = 9/702 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H V       P+ +ETG++A+ +DGAV    GET+V  + V   ++K+GQDFFPLTV+Y
Sbjct: 3   IHNVTAHIGAHPITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  AVGK PGGY +RE RP+E EIL  RM DR +RPLF K Y  +TQ+I  ++  D E
Sbjct: 63  REKAAAVGKFPGGYFKREGRPSEKEILTCRMTDRPLRPLFPKGYLYDTQIIGVLLSADGE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P ++ +  ASAALM+S +PF GPV   +V  +NGQ++ NP   +     LDL   G  
Sbjct: 123 VDPDILFINGASAALMVSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADSDLDLVYVGNA 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
             V+M+E   +++ E+  + A+ F   E   ++    +LA+   K            +L 
Sbjct: 183 TDVIMIEGAGDEVPEEQFIAALHFAQTEVSKIVALQQELAQKVGKAKRQAALFTVKDELM 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E    +  + +  + +   K  R K I  LK ++ +   +++    + EI   F+ +Q K
Sbjct: 243 EVAYAVAGDRIEAAIYNKSKVARQKAIAALKDEVSAAIIAKYPEATKFEISQAFDYLQKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R  +LDK+ R DGR  + +RD+SA+VGLL R+HGS+LF RG+TQA+ + TL   ++ Q
Sbjct: 303 AFRVSILDKQTRCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADEAQ 362

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D  + G     F++HYNF P + GE  R G+P RREIGHG LA R++ PV+P   +FP
Sbjct: 363 ELDGYTGGETTKRFILHYNFPPFSVGETGRTGSPGRREIGHGALAERSVEPVIPDVTKFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG------DDFI 474
           Y +R+ SE+ ES+GS+SMA+VC   LAL+DAGVP+ K VAGI+ GLV +       D + 
Sbjct: 423 YAIRVSSEVMESNGSTSMASVCSGVLALLDAGVPLKKSVAGISCGLVTEFRADGQLDRYT 482

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MD+K+ GT  G+T  Q+D+K+ GI   +M  A+ + +  R+ +L+ 
Sbjct: 483 MLTDIIGSEDHFGDMDWKLCGTRDGVTGFQLDLKLPGIPLKMMEEAIYRTRDARMRVLDV 542

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   LS+ R +L ++ PR+E + I PD+I  +IG GGK I+GIV +TGA++NI+DDG+V 
Sbjct: 543 MDSALSQPRTELSKYAPRIETIRINPDKIGLIIGPGGKTIKGIVAETGAEINIEDDGSVH 602

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I S++   +  A+++I  +T    V ++Y+G+VV + +FG FV     +DG+VHIS+L+ 
Sbjct: 603 IYSNNGDSLLRAKQIIEGMTKEISVGEMYQGRVVTIKEFGCFVEVLPGKDGMVHISELAD 662

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            RV +  DVVK GD +WVK +  D++G++KLS K   +  G+
Sbjct: 663 FRVNRVEDVVKMGDVIWVKCIGVDEKGRVKLSRKAAMKERGE 704


>gi|310658988|ref|YP_003936709.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii
           DSM 519]
 gi|308825766|emb|CBH21804.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           sticklandii]
          Length = 699

 Score =  755 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/688 (43%), Positives = 441/688 (64%), Gaps = 3/688 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E    GR L +E G++A  ++GA +   G+TVVL         ++G DFFPL+V+Y+
Sbjct: 3   KIYETSIGGRNLSVEIGKVAELANGACILRSGDTVVLVVASNSEKPREGIDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+ GKIPGG+++RE RP+E  IL SR+IDR IRPLF K Y+N+ QV+  V+  D  S
Sbjct: 63  EKMYSAGKIPGGFIKREGRPSERSILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDQNS 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           +P  ++M+ +S AL +S +PF GP     V  I+G++++NP LD+  +  + L VSGT++
Sbjct: 123 NPDTMAMIGSSIALSISSIPFNGPTGSVSVGLIDGEFIINPDLDQRAKSQMYLVVSGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
           A++MVE  ++++SED +L AI+F H E K ++  I ++     K    +       ++  
Sbjct: 183 AIMMVEAGSSEISEDTMLKAILFAHEEIKKIVGFIEEIVNDIGKPKDEVVLFVPQEEILS 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +S+  K+ ++ +    +K  R + +D +KK ++ +F   +   N  ++  +   +    
Sbjct: 243 AVSEYGKQKMKDAILTKDKQERLENMDKVKKDILEHFVDIYPD-NMKDVSEIIYKLTKDG 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L  K+R D R  E +R I ++ G+L RTHGS+LF RG TQ + + TLG   D Q 
Sbjct: 302 VRELILKDKIRPDNRMHEEIRPIWSEAGVLPRTHGSALFTRGQTQVMSITTLGALGDVQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D LS  +   +M HYNF   + GE      P RREIGHG LA RA+ P+LP    FPY 
Sbjct: 362 LDGLSEEEEKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALEPMLPSKEDFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GS+S A+VCGS+L+L+DAGVP+   VAGIAMGL+K+GDD  ILSDI G 
Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLSLLDAGVPLKDMVAGIAMGLIKEGDDVAILSDIQGM 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT+ GITA+QMD+KI GI E I+  AL+QA+ GRLHILNEM K LS  
Sbjct: 482 EDFLGDMDFKVAGTEKGITAIQMDIKIAGIDEEILTRALEQARVGRLHILNEMKKTLSAP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++ E+ P +  M I PD+IR+VIG GGKVI  I+E+TG K++I++DG V IA+ +   
Sbjct: 542 REEISEYAPMIITMKIDPDKIRDVIGPGGKVINKIIEETGVKIDIENDGNVFIAAVARDM 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + AR MI +I  VPEV + Y G+V K+M FGAF+     ++GL+H+SQ+  +RV K  D
Sbjct: 602 GKKARAMIENIVKVPEVGQKYMGKVTKLMAFGAFMEILPGKEGLLHVSQIDVKRVNKVED 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  GD   V L + D +G++ LS K +
Sbjct: 662 VLSVGDEFEVLLTEIDAQGRMNLSRKAL 689


>gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 736

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/694 (43%), Positives = 451/694 (64%), Gaps = 6/694 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F      I      + +E G++A Q+ GAV   +G+TVVL T  +   L    DF PLT 
Sbjct: 4   FQTTRRTIPMGDSEIIIEHGKLALQASGAVTVQWGDTVVLVTATHQA-LDRVVDFLPLTC 62

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           NYQE  Y+ G++PG Y RRE  RP+E+E L SR++DR IRPLF K   NE QVI  V+  
Sbjct: 63  NYQEMLYSAGRVPGNYFRREVGRPSEHETLTSRLMDRPIRPLFPKGCTNEIQVIATVISS 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E S  +++M+ AS AL +S +PF GP+   +V Y +G+++LNP   E   S L++ ++
Sbjct: 123 DKERSADILAMLGASTALHISEIPFAGPIAAIRVGYRDGKFLLNPTATELATSQLNMILA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           G++DAV+MVE  A  LSED++ +A+ +GH +  P+++A  +L K   +E   +    + +
Sbjct: 183 GSRDAVVMVEGGAQFLSEDIMTEAVAWGHAQLGPLLDAQEELRKELGREKFTVTPPTEDT 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSVFE 296
           +L E ++ +    L  +  +P K  R      +K+ ++    ++++   E    +  + E
Sbjct: 243 ELIEAVAGLATAPLTEALAVPGKMDRRDAKKKVKQNLMEALMAKYAETPERIRGVGEIME 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ K+VR  ++  K+R+DGRD  TVR +  +VG L RTHGS++F RG+T+A+   TLG+
Sbjct: 303 KLEKKIVRQRIMTDKIRIDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLGS 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +++L+G     F+MHYNF P + GE   + AP RREIGHG L+ RA++PVLP+ 
Sbjct: 363 TRDEQRIETLAGDTSRRFLMHYNFPPYSVGEARMLRAPGRREIGHGALSERALNPVLPEP 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FP+T+R+VS+I ES+GSSSMA+VCG +LALMDAGVPI  P+AGIAMGL+K+GD++++L
Sbjct: 423 DAFPFTIRVVSDIMESNGSSSMASVCGGTLALMDAGVPIKTPIAGIAMGLIKEGDEYLVL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDEDHLG MDFKVAG+  G+T++QMD+KI GI   +M  AL QAK  R+HIL++M 
Sbjct: 483 TDILGDEDHLGDMDFKVAGSRDGVTSIQMDIKIAGIPAEVMQKALHQAKDARVHILDQME 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            +++  R +L +F P+++I+ I  D+IR VIG GGK I+ I E T A ++IDD G + I 
Sbjct: 543 ALIAAPRGELSKFAPQMDIVHISQDKIREVIGPGGKNIKAICEATKADIDIDDSGKISIF 602

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +     +  AREM+       E+NK Y G V K+MDFGAF+      +GL HISQL+ +R
Sbjct: 603 APDSVSLAKAREMVLYYDQKAELNKDYDGIVKKIMDFGAFIEILPGLEGLCHISQLARDR 662

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V   +DVV+EGD + V+++D +  G+IKLS K +
Sbjct: 663 VNVVTDVVQEGDAIRVRVIDIEPSGRIKLSRKAI 696


>gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 807

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/694 (44%), Positives = 452/694 (65%), Gaps = 9/694 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D+    ++     L +E GR+A+Q+DGAV+  YG+T++L T V  R  KD  DF PLTV 
Sbjct: 85  DMLKKSVKIGDSELSIEVGRLAKQADGAVVVRYGDTMLLVTAVSAREKKD-VDFLPLTVE 143

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ Y+ G+IPG Y +RE R TE E L SR++DRS RPLF   Y  ETQ+I +V+  + 
Sbjct: 144 YQEKLYSAGRIPGSYFKREGRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEP 203

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E+   +  +  ASAAL +S +PF GP+ G +V  ++G++V NP L + +Q  +DL ++ +
Sbjct: 204 ENEGDIHGITGASAALWVSDIPFNGPIAGIRVGRVDGKFVANPTLKQREQSDIDLVMAVS 263

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSK 239
           ++A++MVE  A ++SE  ++ A+ FG    +P ++   +L +   K     +  +     
Sbjct: 264 REAIVMVEGGAEEVSEADMVAALEFGKQAVQPALDIQDELRRELGKTVRSYEKLASIDEG 323

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVF 295
           L+ ++ ++  + +     I EK  R + +   KK+ ++    +    ++   E     V 
Sbjct: 324 LKAKVRELAWDGIVKGYGIKEKAARYESLGKAKKEAIAKLKEQLGDAYTPAVEKHAKQVV 383

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ED++ + +R + +D   R+  R    VR I+ +VG+L RTHGS++F RG+TQA+VV TLG
Sbjct: 384 EDLKYEHMRQLTVDGG-RIGARGHAEVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLG 442

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T EDEQ ++ L G     FM+HYNF P +  E   +  P RRE+GHG LA RA+  + P+
Sbjct: 443 TSEDEQRLELLGGMVFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMAPK 502

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           +  FPYT+R+VS+I ES+GSSSMA+VCG +LALMDAGVPI  PVAGIAMGLVK+GD   I
Sbjct: 503 SDSFPYTIRVVSDILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEGDKVAI 562

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKV GT  GIT++QMD+KI G++  IM  AL+QA++GR+HIL EM
Sbjct: 563 LSDILGDEDHLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRIHILGEM 622

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K ++E R ++ ++ PR+  + I P+ I+NVIG GGKVI+ I+ +TGA +NI+D G V I
Sbjct: 623 LKTMAEPRKEISQYAPRITTIQIRPEYIKNVIGPGGKVIKDIIARTGAAINIEDSGRVDI 682

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS++   +++A  MI+++T   E+ KIY G V K+ +FGAFV      DGL+HIS+LS +
Sbjct: 683 ASANSDSVKSAIAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDK 742

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           RV   SDV+KEGD V VK++  D  GKI+LS K 
Sbjct: 743 RVKSVSDVLKEGDEVLVKVVSIDKTGKIRLSRKE 776


>gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae
           ESF-5]
 gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae
           ESF-5]
          Length = 748

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/696 (47%), Positives = 482/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|307278201|ref|ZP_07559283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0860]
 gi|306505190|gb|EFM74378.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0860]
          Length = 694

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/682 (43%), Positives = 445/682 (65%), Gaps = 8/682 (1%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           I+++++GAVL  YG+TVVL+  V  +  KD  DFFPLTVNY+E+ YAVGKIPGG+++RE 
Sbjct: 13  ISQKANGAVLVRYGDTVVLSAAVASKEAKD-VDFFPLTVNYEEKMYAVGKIPGGFIKREG 71

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           RP+E   L +R+IDR IRP+FS+ ++NE Q+   VM  + + +P + +M  +S AL +S 
Sbjct: 72  RPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEMAAMFGSSLALAISD 131

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +PF+GP+ G  V  ING+YVLNP +++ +Q  ++L V+GT++A+ MVE  A ++SE+ +L
Sbjct: 132 IPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAGTKEAINMVESGAKEVSEEDML 191

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQMIKEDLRVSCFIPE 260
            A++FG +  K ++    ++     K  + +D  +  + L++E+       ++ +    E
Sbjct: 192 GALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDADLKKEIFDAYYNTMKTAVMTEE 251

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVRTVMLDKKVRMD 315
           K  R  +ID +K  +   ++ + +   E      E+  + ED++  VVR ++   K+R D
Sbjct: 252 KLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQIAEDLEKDVVRELITIDKIRPD 311

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR  + +R +S++V +L R HGS LF RG TQA+ V TL    + Q +D L       F+
Sbjct: 312 GRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDSKRFI 371

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
            HYNF   + G   R G+P RREIGHG L  RA+  ++P    FPYT+R+V+E+ ES+GS
Sbjct: 372 HHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVAEVLESNGS 431

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
           SS A++C  +LALMDAGVPI  PVAGIAMGLV DG+++ IL+DI G EDHLG MDFKVAG
Sbjct: 432 SSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYTILTDIQGLEDHLGDMDFKVAG 491

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
           T  GITA+QMD+KI GI+E I+  AL QAK+ R+ IL E++  ++  R +L ++ P++EI
Sbjct: 492 TKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEELTTTIAAPREELSQYAPKIEI 551

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           + I P +I++VIG GG+ I  I+++TG K++ID DG V IASS    I+ A ++I  +T 
Sbjct: 552 IQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVSIASSDAEMIKKAIKIIEELTK 611

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV ++Y  +VV++  FGAFV+    +DGL+HISQL+ ERV    DVVK GD V VK+ 
Sbjct: 612 EVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLANERVNNVEDVVKLGDEVLVKVT 671

Query: 676 DFDDRGKIKLSMKVVDQNTGKP 697
           + D +G++ +S K +     K 
Sbjct: 672 EIDKQGRVNVSRKALLNEENKE 693


>gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
 gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
          Length = 711

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/701 (43%), Positives = 457/701 (65%), Gaps = 9/701 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            +    + + +ETG+ A+Q+ G+V+   G+T+VL T    +S + G DF PLT  YQE+T
Sbjct: 7   SVTVGDKEIIIETGKWAKQASGSVVVRCGDTMVLVTATASKSPRVGMDFLPLTCEYQEKT 66

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+ GKIPG + RRE+RP+ +E+L++R++DR  RPLF K ++ ETQ+I NV+  D  ++  
Sbjct: 67  YSAGKIPGNFFRREARPSTDEVLVARLMDRPSRPLFPKLWRCETQLIANVVSFDQSNAAD 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V++M  +S AL +S +P++GPV   +V  + G++V  P  +E +Q  +D+ VS ++DA++
Sbjct: 127 VLAMTGSSCALHISDIPWDGPVAAVRVGRVAGEFVAFPTFEEREQSDIDMIVSASRDAIV 186

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMS 245
           MVE    ++ E V++DA++F H   +P+I+   KL     KE    ++  F   L  ++ 
Sbjct: 187 MVEGGMREVPEQVLIDALLFAHEAVQPLIDLQEKLRAAVGKEKRPFEAPSFDQDLLAKVQ 246

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG-------EIVSVFEDI 298
           +   E +R +  + EK+ R   + D+++ +V        +  E        E+   +E +
Sbjct: 247 ESAWERVREAFEVREKHSRSAALSDVRRALVGELCGAQENATEAVYAGREDEVSEAYEKV 306

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +  R   LD K R+DGR  + +R IS +VG+L   HGS+LF RG+TQA+V  T+GTR 
Sbjct: 307 KKRFARLNTLDSKHRIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRY 366

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  +  F +HYNF P  TGE   + + SRRE+GHG LA R+I  V+P+   
Sbjct: 367 DEQKLDTLLGGMQKPFFLHYNFPPFCTGEAKPIRSTSRRELGHGNLAERSIAQVMPERED 426

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGL+ +G+ + ILSD
Sbjct: 427 FPYTVRVVSEILESNGSSSMASVCGASLSLMDAGVPVLSPVAGIAMGLMMEGERYAILSD 486

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDH+G MDFKV GT  G+ A+QMD+K+ G++ +I+V AL+QA+RGR+HIL++M++ 
Sbjct: 487 ILGDEDHMGDMDFKVTGTARGVCALQMDIKLKGLTRDILVEALEQARRGRMHILDKMAEA 546

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L   R  L    PR+    + PD+IR++IG GGK IR I EQTGAK+++ D G V IASS
Sbjct: 547 LQTPREDLSPNAPRIVTETVKPDKIRDIIGPGGKTIRAIAEQTGAKIDVSDAGVVSIASS 606

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A ++IR +T  PEV + Y G V ++++FGAFV      DGLVHIS+LS+ERV 
Sbjct: 607 DSRSLQQAIDIIRGLTMEPEVGQFYGGVVKRIVEFGAFVEILPGTDGLVHISELSSERVR 666

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +  DV++EG+ + VK +  D  GKI+LS+K         I+
Sbjct: 667 RVEDVIQEGEEIVVKCISVDRDGKIRLSLKEAADANPDDIL 707


>gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
 gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
          Length = 695

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/690 (45%), Positives = 458/690 (66%), Gaps = 8/690 (1%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF D      +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPL
Sbjct: 1   MFQDKKIYTTQWAGKELTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPL 59

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNY+E+ YAVGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+ 
Sbjct: 60  TVNYEEKMYAVGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLS 119

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P + +M+ +S AL +S +PF+GP+ G  V Y++G+YV+NP +++ ++  +DL V
Sbjct: 120 VEYDCDPVMAAMLGSSLALSVSNIPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKIDLKV 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT+DA+ MVE  A ++SE+V+L+AI+FGH E K +I    ++     +E + ++ K   
Sbjct: 180 AGTKDAINMVEAGAEEVSEEVMLNAIMFGHEEIKRLIAFQQQIVDEIGQEKMEVELKVID 239

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293
           + +  E+  +   +++ +  I +K  R + I  +K+++++ F    +  +E +IV     
Sbjct: 240 ENIYNEVLDLSLTEMKSAIAIKDKQERDEAISVVKERVLAVFEERVTDEDELDIVKEAKL 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + I    VR  + + KVR DGR    +R +++++ +L RTHGS+LF RG TQ++ VVT
Sbjct: 300 SLDKIVKDEVRREITEDKVRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ +D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+
Sbjct: 360 LGNLSDEQIIDDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + +
Sbjct: 420 PSKEDFPYTIRIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL+
Sbjct: 480 TILTDIQGMEDHLGDMDFKVAGTSEGITALQMDIKIEGLSEQILKESLEQARVGRLQILD 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M+ ++SE R ++  F P+++I+ I P++I++VIG GGKVI  I+E+TG K++I+  G V
Sbjct: 540 HMNNIISEPREEVSTFAPKIKIIRIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQTGEV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+S  +  I  A E+I +IT   EV ++Y  +V ++  FGAFV      D LVHIS+LS
Sbjct: 600 FISSPEIDGINKAIEIIENITREAEVGEVYLAEVKRIEKFGAFVELFPGVDALVHISKLS 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
            ERV K  DVVK GDT+ VK++  D++G++
Sbjct: 660 AERVNKVEDVVKIGDTLKVKVIKIDEKGRV 689


>gi|116512733|ref|YP_811640.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123320193|sp|Q02WZ5|PNP_LACLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116108387|gb|ABJ73527.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Lactococcus lactis subsp. cremoris SK11]
          Length = 769

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/700 (41%), Positives = 444/700 (63%), Gaps = 11/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      +      DFFPL VNY
Sbjct: 3   KETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMA--TGDFFPLQVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 61  EEKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  V +M  +S AL +S +PF+GP+ G +V YI+G+YV+NP + E + S L+L V+G  
Sbjct: 121 ASGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYVINPTVAEKESSSLELSVAGNI 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++       L+
Sbjct: 181 NAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLK 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K+ ++S +S+++ +         ++  + E
Sbjct: 241 AEVIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILE 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTL 354
            ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL
Sbjct: 301 GMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP
Sbjct: 361 APMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ 
Sbjct: 421 SLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYT 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ 
Sbjct: 481 VLTDIQGLEDHFGDMDFKVAGTREGITALQMDIKISGITPEILAEALAQAKTARFQILDV 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           +   +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   
Sbjct: 541 IEATIAQPREELAPSAPKIDTIMIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCS 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS  + I+ A+E+I  +    +V ++Y+ +VV++  FGAFV+  G +D +VHIS+++ 
Sbjct: 601 IFSSDQSAIDRAKEIIAELVREAKVGEVYEAKVVRIESFGAFVNLFGKQDAMVHISEMAW 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            R AK  DV+K GD V VK++  DD+G++  SM+ + +  
Sbjct: 661 ARTAKVEDVMKLGDVVKVKIMKIDDKGRVDASMRALVEKP 700


>gi|258404622|ref|YP_003197364.1| polynucleotide phosphorylase/polyadenylase [Desulfohalobium
           retbaense DSM 5692]
 gi|257796849|gb|ACV67786.1| polyribonucleotide nucleotidyltransferase [Desulfohalobium
           retbaense DSM 5692]
          Length = 742

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/695 (44%), Positives = 451/695 (64%), Gaps = 6/695 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F   +V     G+ + +ETGR+A Q++GAV    G TVVL T V     +D  DF PL 
Sbjct: 6   IFGSTSVSTTLQGQDILIETGRLANQANGAVWVQSGGTVVLVTAVTQPVTRD-IDFMPLV 64

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V+YQE +YA G+IPG Y RRE  RP+E E L+SR+IDR IRPLF   +++E Q+I  V+ 
Sbjct: 65  VDYQEMSYASGRIPGNYFRREIGRPSERETLVSRLIDRPIRPLFPAGFRDEVQIIATVLS 124

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
              E +P V+++  ASAA+ +S +PF+GP+ G +V  ++G++VLNP  +E +   L+L +
Sbjct: 125 AAPEVNPDVLALTGASAAMHISDIPFDGPIGGIRVGQVDGEFVLNPSQNELENSDLNLVL 184

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-F 237
           +G++DAV MVE   N + ED + +AI +GH + + +++   +L +      I + + +  
Sbjct: 185 AGSRDAVTMVEGGGNFVPEDRMAEAITWGHEQVQALLQLQDELREKIGAPKIAVQAPEAD 244

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--IVSVF 295
           ++LE  +  +   +L  +  +P K  R      +K K+++    E +   E       +F
Sbjct: 245 TELESRVHDLAGSELAEALQVPNKLERKTAKKTVKDKVMATLEQEFAEEPERLKGAGKIF 304

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++  +VR  + + K R+DGRD  TVRD++ +   L RTHGS++F RG+T+ + V TLG
Sbjct: 305 EALEKDIVRKRVKETKTRIDGRDLTTVRDLNIETSSLPRTHGSAIFARGETKVLSVATLG 364

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ ++ L G     FM+HYNF P   GEV  M  P+RREIGHG LA RA+ PVLP 
Sbjct: 365 SSRDEQRIEMLDGELNKRFMLHYNFPPYCVGEVKMMRGPARREIGHGALAERALTPVLPT 424

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FP+T+R+VSE+ ES+GSSSMATVCG+SL+LMDAGVP+S PVAGIAMGL+K+ D+F++
Sbjct: 425 EDEFPFTMRVVSEVMESNGSSSMATVCGTSLSLMDAGVPVSAPVAGIAMGLIKEEDEFLV 484

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAGT  GITA+QMD KI GI   ++  AL QA   RLHIL+ M
Sbjct: 485 LTDILGDEDHLGDMDFKVAGTAEGITAIQMDSKIAGIPPEVLKRALNQAMDARLHILDNM 544

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           + VL  +R +L E  P++EI+ +  ++I++VIG GGK I+ I + TGA ++I+D G + I
Sbjct: 545 NTVLPAARAELSEHAPQLEIVEVDTERIKDVIGPGGKNIKAITQATGASIDIEDSGRISI 604

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +   ++ A +M+       EV K Y+G V ++M+FGAFV      +GL+HISQL  +
Sbjct: 605 FAPNQQALQEAVDMVLFYDQKAEVGKDYEGTVKRIMNFGAFVEILPGLEGLLHISQLDQQ 664

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV +  DVVK GD+V VK+++    GKI+LS K V
Sbjct: 665 RVEQVEDVVKVGDSVKVKVIEQSGDGKIRLSRKAV 699


>gi|76788173|ref|YP_328934.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae A909]
 gi|76799250|ref|ZP_00781422.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77405356|ref|ZP_00782451.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
 gi|77410940|ref|ZP_00787296.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           CJB111]
 gi|123602514|sp|Q3K3G9|PNP_STRA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76563230|gb|ABA45814.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           A909]
 gi|76585403|gb|EAO61989.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77162995|gb|EAO73950.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           CJB111]
 gi|77176034|gb|EAO78808.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
          Length = 709

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/700 (39%), Positives = 439/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFEMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+       L+ +  + EK  R    + +K+ ++  + + ++   E      ++  + E
Sbjct: 242 AEIIATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGEAQIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLH 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 GAIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  +DV++ G+ V VK++  DD+G++  SMK +     K
Sbjct: 662 TANVADVLEIGEEVDVKVIKIDDKGRVDASMKALLPRPPK 701


>gi|158523039|ref|YP_001530909.1| polynucleotide phosphorylase/polyadenylase [Desulfococcus
           oleovorans Hxd3]
 gi|226702647|sp|A8ZZ59|PNP_DESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158511865|gb|ABW68832.1| Polyribonucleotide nucleotidyltransferase [Desulfococcus oleovorans
           Hxd3]
          Length = 721

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/695 (46%), Positives = 441/695 (63%), Gaps = 4/695 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E    G+P  ++TGR+A+Q+ GA L  YGET+VL TV      K+  DF PL+V YQ
Sbjct: 4   HVFEATVNGKPFTIKTGRLAKQAAGAALVQYGETIVLVTVAAATEPKEDADFLPLSVEYQ 63

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           E+ Y+ G+IPG Y RRE  RP+E E L  R+ DR IRPLF   Y  ETQVI  V+  D E
Sbjct: 64  EKIYSAGRIPGNYFRREIGRPSEKETLTCRLTDRPIRPLFPAGYTFETQVITTVLSMDRE 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+S+V ASAAL +S LPF+GP+   +V  +NG  V NP   E D   +++ V+G++
Sbjct: 124 NDPDVLSIVGASAALTISDLPFDGPLAAVRVGRLNGTLVANPTNTELDDCDINIVVAGSR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLE 241
             V+MVE  +N +SE  +L+AI FGHN   P+I+   ++   C K   VI   +  ++LE
Sbjct: 184 SGVVMVEGGSNVVSEAEMLEAIFFGHNALLPLIDIQDQMRNACGKPKRVIVPPEKDTELE 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +++++ + +  +   PEK  R   +  +++ +        +   + EI  +F D+  K
Sbjct: 244 TRIAELVGDAVAQAVTEPEKDARKSALSKVRENLFQGLGEAFAD-RKREIKGLFSDLVKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V R ++L++  R+DGR  + VR IS +VG+L RTHGS+LF RG+TQ + V+TLG+  DEQ
Sbjct: 303 VCRDIVLNQGRRIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLGVMTLGSGHDEQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            V++L G +   FM+HYNF P   GEV R+  PSRR+IGHG LA R I  VLP    F Y
Sbjct: 363 RVETLFGDETRPFMLHYNFPPFCVGEVKRVMGPSRRDIGHGNLAHRGISYVLPDKETFDY 422

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSM TVC   LALMD GVPI  PV+GIAMGLV DGD   +LSDI G
Sbjct: 423 TIRLVSEVLESNGSSSMGTVCSCILALMDGGVPIKAPVSGIAMGLVADGDKVAVLSDILG 482

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDH G MDFKV GT+ GITA+QMD+KI  +S  I+  AL QAK GR+HIL +M + LS 
Sbjct: 483 DEDHFGDMDFKVTGTEKGITALQMDIKIKSLSREILEKALHQAKDGRIHILGKMLEALSH 542

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  +  + P++ I+ I PD+IR +IG GGKVIR +   +  ++ +DD GTVKIA+S+  
Sbjct: 543 YRDDISPYAPKIYIVKIHPDKIREIIGPGGKVIRELQAMSNTRIEVDDSGTVKIAASTEE 602

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E   A + +  I  VPE  +IY+G+VV++ DFGAF+      DGL HIS+L    V   +
Sbjct: 603 EARIAIKAVEDIGRVPEPGEIYEGEVVRITDFGAFIQIKNGTDGLCHISELEHHHVKSVT 662

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DVVK GD V VK+L+    GKI+LS K +     K
Sbjct: 663 DVVKMGDKVRVKVLEVSPEGKIRLSRKALLPAPEK 697


>gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
 gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
          Length = 748

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/696 (47%), Positives = 483/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  F PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+++SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVVVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIHEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP  A
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKA 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  G+TA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGMTALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|94989291|ref|YP_597392.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS9429]
 gi|122987076|sp|Q1JJX5|PNP_STRPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94542799|gb|ABF32848.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS9429]
          Length = 710

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/694 (39%), Positives = 435/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|303248250|ref|ZP_07334513.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           fructosovorans JJ]
 gi|302490388|gb|EFL50299.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           fructosovorans JJ]
          Length = 751

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/703 (44%), Positives = 460/703 (65%), Gaps = 8/703 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           FD   ++    G  + LETGR+A Q+DGAV    G TVVL T      L + + FFPLTV
Sbjct: 5   FDPIRLQANIGGNAVILETGRLANQADGAVWVQSGGTVVLVTACTQ-VLPEEKGFFPLTV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +YQE +YA G+IPG Y RRE  RP+E E+L+ R+IDR  RPLF K +++E Q+I  V+  
Sbjct: 64  DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--QGSLDLFV 178
           D    P V+++ AAS+AL +S +PFEGP+ G +V Y++G +V NP + +   + +L+L  
Sbjct: 124 DGVVEPDVLALTAASSALHISKIPFEGPIAGGRVGYVDGAFVFNPTVQQMNGESTLNLVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           + ++DAV+MVE     +SED++ DA+ +GHN  +P+I+   +L +   K  I  +     
Sbjct: 184 AASRDAVVMVEGGGQFVSEDMLADALEWGHNSVQPLIDLQEELREKAGKPKIAFVPPTPI 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN--EGEIVSVF 295
            +LE+ +    +  L+ +  I +K  R +    +K+ +V    +        + +   + 
Sbjct: 244 EELEKLVHATAEAGLKEAFAIKDKMPRREARKAVKQAVVEAVVAAFPDEPTYKAKAGDIL 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++ K++RT++ +  +R+DGRD++TVR I  +VG+L RTHGS++F RG+T+++ V TLG
Sbjct: 304 ADMEKKLLRTLIKETGIRLDGRDTKTVRPIGIEVGVLPRTHGSTIFARGETKSLCVATLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ +++L+G     FM+HYNF P   GEV  M  PSRREIGHG LA R+I PVLP 
Sbjct: 364 STGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKPMRGPSRREIGHGALAERSILPVLPG 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FP+T+R+VS++ ES+GSSSMA+VCG+SLALMDAGVP+ +PVAGIAMGL+K+GDDF++
Sbjct: 424 ADEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPVKEPVAGIAMGLIKEGDDFLV 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED +G MDFKVAGT +G+T +QMD+KI GI + +M  AL QAK  RLHIL  M
Sbjct: 484 LTDILGDEDAMGDMDFKVAGTANGVTGIQMDIKITGIPQAVMRQALSQAKEARLHILGRM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++VL+  R +L    P++E++ I P++IR VIG GGK I+ I   TGA ++I+D G + I
Sbjct: 544 AEVLAAPRAELSPLAPQLEVVNINPEKIREVIGPGGKNIKAITADTGASIDIEDSGKISI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +L  +  A+E +       +V   YKG V KV+D GA +      +GL H+SQL  E
Sbjct: 604 FAPTLDSLAKAKERVLFYDQHADVGANYKGIVRKVIDCGAIIEILPGLEGLCHVSQLDVE 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGKP 697
           RVA  +DVVK G  + VK+L+ +  G+I+LS K V ++  G P
Sbjct: 664 RVASPADVVKLGQEIEVKVLEEEPSGRIRLSRKAVLNEERGIP 706


>gi|116627040|ref|YP_819659.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus LMD-9]
 gi|122268357|sp|Q03MV9|PNP_STRTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116100317|gb|ABJ65463.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus thermophilus LMD-9]
          Length = 741

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/700 (40%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E+ + GRPL +E G++A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY
Sbjct: 3   KQTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATA-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   + + S LDL V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           +A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++  +  + L+
Sbjct: 182 EAINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVNADLK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+  +  + L  +  + EK  R      +K+++++ +    +   + E     +V + E
Sbjct: 242 AEIEAVYYDQLAKAVQVEEKLAREAATKAVKEEVLASYQERFAEDEDKETILRDVVEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  F+ HYNF   + G+  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSDTQLVDGLDPEYKKRFLHHYNFPQYSVGKTGRYGAPGRREIGHGVLGERALAQVLPSV 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I 
Sbjct: 542 SAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I+ A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ + 
Sbjct: 602 SSDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKH 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVVK GD V VK++  D++G++  S+K +     K
Sbjct: 662 TEHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTLLPKPEK 701


>gi|22536387|ref|NP_687238.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae 2603V/R]
 gi|81455352|sp|Q8E1Z8|PNP_STRA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22533214|gb|AAM99110.1|AE014201_8 polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           2603V/R]
          Length = 709

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/700 (39%), Positives = 440/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFEMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+       L+ +  + EK  R    + +K+ ++  + + ++   E      ++  + E
Sbjct: 242 AEIIATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP+ 
Sbjct: 362 MGEAQIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPRL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLH 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 GAIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  +DV++ G+ V VK++  DD+G++  SMK +     K
Sbjct: 662 TANVADVLEIGEEVDVKVIKIDDKGRVDASMKALLPRPPK 701


>gi|319744138|gb|EFV96511.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 713

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/700 (40%), Positives = 439/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 7   KQVFEMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  
Sbjct: 66  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDEN 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT+
Sbjct: 126 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++  +   +L+
Sbjct: 186 EAINMVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQ 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+       L+ +  + EK  R    + +K+ ++  + + ++   E      ++  + E
Sbjct: 246 AEIIATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILE 305

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 306 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAP 365

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 366 MGEAQIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 425

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 426 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 486 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLH 545

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 546 GAIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIF 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 606 SSDQAAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 665

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  +DV++ G+ V VK++  DD+G++  SMK +     K
Sbjct: 666 TANVADVLEIGEEVDVKVIKIDDKGRVDASMKALLPRPPK 705


>gi|94995150|ref|YP_603248.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10750]
 gi|123080074|sp|Q1J4N2|PNP_STRPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94548658|gb|ABF38704.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 710

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/694 (39%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  V +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPVAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|322411051|gb|EFY01959.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 714

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/701 (39%), Positives = 436/701 (62%), Gaps = 8/701 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVISTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIIFQEQIVAAVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKSREAATEAVKEMVKAEYEERYAEDENLAIIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ +IG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVIIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIADLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
               SDV++ G+ V VK++  D++G++  SMK +     KP
Sbjct: 662 TTNVSDVLEVGEEVDVKVIKIDEKGRVDASMKALIPRPPKP 702


>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
 gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
          Length = 714

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/697 (44%), Positives = 456/697 (65%), Gaps = 4/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  V IE  GRP++ +TG++A+Q+DG+VL + G+T+VL T V     ++  DFFPL V Y
Sbjct: 3   ISEVAIEVGGRPMRFQTGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG+++RE +PT+ EIL +R+ DRSIRP+F K ++N+ QVI  V+  D E
Sbjct: 63  RERAYAAGKIPGGFIKREGKPTDEEILKARVTDRSIRPIFPKGFRNDVQVIAFVISADQE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P V+++  ASAAL +S +PFE PV   +V  ++G+ V+NP  +E Q   +DL VSGT+
Sbjct: 123 NDPAVLAINGASAALHISRIPFEKPVGAVRVARVDGKLVINPSYEERQRADIDLIVSGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           DAV+MVE  A ++ E+ VLDAI+  H E K +++A  +L  +  K     +  +     +
Sbjct: 183 DAVVMVEGGAKEVPEEEVLDAILLAHEEIKKIVKAQDELRNLAGKPKYQFVAPELDPATK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E + Q + E +     I +K+ R +++ +LK+ M+   +      +       F + + +
Sbjct: 243 ERIKQWVFERIEPVITIKDKHERREKLRELKELMLIELNI--PEEDHHLAKEAFNEAEKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L++ VR+DGR  + +R IS +VGLL R HGS+LF RG TQA+V  TLGT E+ Q
Sbjct: 301 FVRKMVLERGVRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEEYQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            V+ L   ++  FM+HYNF P   GE+S M  P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 361 LVEGLMPEEQKRFMLHYNFPPFCVGEISPMRGPGRREIGHGALAERALAPVIPPEEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VS+I ES+GSSSMATVCG SL+LMDAGVPI   VAGIAMGL+ +GD F++LSDI G
Sbjct: 421 VIRVVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLIMEGDKFVVLSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+K+ GIS  ++  AL+QA+RGR+ IL++M  V+SE
Sbjct: 481 DEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISREVLSKALEQARRGRMFILDKMDAVISE 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + PR+    I P++ R++IG  GK I+ I+++ G K+ I +DGTV +++ S  
Sbjct: 541 PRKELSPYAPRIVTTKIDPEKTRDLIGPSGKTIKTIIDKAGVKITIKEDGTVLVSAPSEE 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A +MI  +T   EV   Y G+V +V ++GAFV     + GLVHIS+L  E      
Sbjct: 601 AAAQALKMIEDVTKDLEVGNTYLGKVTRVENYGAFVELAPGKVGLVHISKLPPELRENIF 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + +K  D + VK+++FD  G+ KLS   V +   K +
Sbjct: 661 EKIKVSDLIPVKIVEFDQFGRPKLSRIDVTREEEKKL 697


>gi|125624816|ref|YP_001033299.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|187610279|sp|A2RMS5|PNP_LACLM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|124493624|emb|CAL98611.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071615|gb|ADJ61015.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 766

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/700 (41%), Positives = 444/700 (63%), Gaps = 11/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      +      DFFPL VNY
Sbjct: 3   KETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMA--TGDFFPLQVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 61  EEKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +S  V +M  +S AL +S +PF+GP+ G +V YI+G+Y++NP + E +  SL+L V+G  
Sbjct: 121 ASGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLELSVAGNI 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++       L+
Sbjct: 181 NAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLK 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K+ ++S +S+++ +         ++  + E
Sbjct: 241 AEVIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILE 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTL 354
            ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL
Sbjct: 301 GMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP
Sbjct: 361 APMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ 
Sbjct: 421 SLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYT 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ 
Sbjct: 481 VLTDIQGLEDHFGDMDFKVAGTREGITALQMDIKISGITPEILAEALAQAKTARFQILDV 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           +   +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   
Sbjct: 541 IEATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCS 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS  + I+ A+E+I  +    +V ++Y+ +VV++  FGAFV+  G +D +VHIS+++ 
Sbjct: 601 IFSSDQSAIDRAKEIIAELVREAKVGEVYEAKVVRIESFGAFVNLFGKQDAMVHISEMAW 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            R AK  DV+K GD V VK++  DD+G++  SM+ + +  
Sbjct: 661 ARTAKVEDVMKLGDVVKVKIMKIDDKGRVDASMRALIEKP 700


>gi|326407346|gb|ADZ64417.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 773

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/700 (41%), Positives = 441/700 (63%), Gaps = 11/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  IE+AGR L +ETG++A+Q++GAV+  YG+T VL      +      +FFPL VNY
Sbjct: 3   KETFSIEFAGRTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMA--TGEFFPLQVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 61  EEKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +S  V +M  +S AL +S +PF+ P+ G +V YI+G+Y++NP + E +  SL+L V+G  
Sbjct: 121 ASGRVAAMFGSSLALAISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLELSVAGNI 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++       L+
Sbjct: 181 NAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLK 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  I EK  R      +K+ ++S +S+++ +         ++  + E
Sbjct: 241 AEVIAAYNSDLQKAVQIEEKLARESATKAVKEAIISVYSAKYENDENLSIILRDLAEILE 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTL 354
            ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL
Sbjct: 301 GMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP
Sbjct: 361 APMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ 
Sbjct: 421 SLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYT 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ 
Sbjct: 481 VLTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKISGITPEILAEALAQAKTARFQILDV 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           +   +++ R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG K++IDD+G   
Sbjct: 541 IEATIAQPREELAPSAPKIDTITIPVDKIKVVIGKGGEQIDKIIAETGVKIDIDDEGLCS 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I SS  A I+ A+E+I  +    +V +IY  +VV++  FGAFV+  G +D +VHIS+++ 
Sbjct: 601 IFSSDQAAIDRAKEIIAELVREAKVGEIYDAKVVRIESFGAFVNLFGKQDAMVHISEMAW 660

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            R     DVVK GDTV VK++  DD+G++  SM+ + +  
Sbjct: 661 ARTENVEDVVKLGDTVKVKIMKIDDKGRVDASMRALVEKP 700


>gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
 gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
          Length = 818

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/695 (45%), Positives = 447/695 (64%), Gaps = 7/695 (1%)

Query: 4   VHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
              V +E   G+ +K ETGRIA+Q+ GA   T G+  VLAT V     K+G DFFPLTV 
Sbjct: 2   KQDVTVELAGGKQIKFETGRIAKQASGAAYTTSGDNAVLATAVASPDPKEGIDFFPLTVE 61

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E TYA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQV+  V   D 
Sbjct: 62  YREFTYAGGRIPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADK 121

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E+ P V+ +  AS AL LS +PF GPV   ++ YI+ QY++NP   E     L++ V GT
Sbjct: 122 ENDPDVLGINGASCALALSDIPFHGPVGAVRIGYIDEQYIVNPTYTERLTSKLNIMVVGT 181

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKL 240
           +D ++MVE  A ++ E+VV+ AI F H E K ++  I  L     K    +   ++ ++ 
Sbjct: 182 KDGIVMVESGAKEIPEEVVVGAIEFAHEEIKKIVAGIEDLVSRAGKTKRTVTPLENDTEY 241

Query: 241 EEEMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
              +   + E L  +    +  K+    ++ ++K  +      E  +    ++   FE +
Sbjct: 242 AAALKAKVGESLADALNTKKYPKFESYAKVKEIKDALKKDL-PEGDAAAAKKLGKYFEGL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  + R  +L+ ++R D R  + +R I+ + G+L R HGS+LF RG+TQA+V  TLGT +
Sbjct: 301 RETIFREQVLNDRIRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTD 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q ++S  G Q+  FM+HYNF P + GEV RM    RREIGHG LA RAI  VLP   +
Sbjct: 361 DAQRMESYEGEQKRKFMLHYNFPPFSVGEVGRMTGVGRREIGHGALAWRAIEAVLPGEDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            PYTLR+VS+I ES+GSSSMATVCG+SL+LM AG+P+   VAG+AMGLVK+GD + IL+D
Sbjct: 421 SPYTLRVVSDILESNGSSSMATVCGASLSLMQAGIPLKGSVAGVAMGLVKEGDKYAILTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+G EDH G MDFKVAGT +GITA+QMD+KI GI+  IM  AL+QA+ GRL +L++M  +
Sbjct: 481 IAGAEDHYGDMDFKVAGTRNGITALQMDIKIMGITAQIMREALEQARHGRLFLLDKMDAI 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S++  +   F PR+  + IP D+IR++IG GGKVIRGIV+ TG K+++DD G V +ASS
Sbjct: 541 ISKANEEKSAFAPRIHTIQIPTDKIRDLIGPGGKVIRGIVDATGVKIDVDDTGRVNVASS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               +  A +MI  IT VPEV K Y G+VV++ +FGAFV      DGL+H+S+++  RV 
Sbjct: 601 DAEGLAKAIQMISDITAVPEVGKTYLGKVVRLAEFGAFVEIFPGTDGLLHVSEIAEHRVK 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              D +++GD V VK+L   +  +IKLS K V + 
Sbjct: 661 DVKDELRDGDQVLVKVLSI-EGNRIKLSRKAVLKE 694


>gi|251781688|ref|YP_002995990.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390317|dbj|BAH80776.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 714

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/694 (39%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A+V  L + HG  LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEVDFLPKVHGLGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ETIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|224540971|ref|ZP_03681510.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526122|gb|EEF95227.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
           15897]
          Length = 712

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/705 (42%), Positives = 447/705 (63%), Gaps = 14/705 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                +++ G+ +++E G +A+Q++G+ L  Y +TVVL+T    +  KD  DFFPLTV Y
Sbjct: 3   KQIFSMDFYGKKIQVEVGEMAKQANGSCLVRYDDTVVLSTACAGKEPKD-VDFFPLTVTY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGKIPGG+L+RE RP+E+  L +RMIDR IRPLF+  ++NE QV+  V+  D E
Sbjct: 62  EEKLYSVGKIPGGFLKREGRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           ++P + +M+ AS AL +S +PF GP+ G  V  I+G++ +N   ++  +  ++L V+GT+
Sbjct: 122 ATPEMAAMLGASIALCISDIPFNGPIAGVNVGLIDGEFTVNAGPEDMARSEINLEVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           DA+ MVE +A ++ E+ +L+A++FGH + K +I    ++ +   KE I +      + + 
Sbjct: 182 DAINMVEADAKEVDEETMLNALMFGHEKIKELIAFQEQIVEAVGKEKIDVPLFALDENIV 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS------EHSSWNEGEIVSVF 295
             +  M KE++  +  IP K  R   ID+L  K+V  F        E       ++  V 
Sbjct: 242 SSVEAMAKEEMIKAISIPGKLERYAAIDELDAKVVESFEEKEYATVEEHDKTIKQVKMVL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++ + VR ++ ++KVR DGR  + VR + AQV LL R HGS++F RG+TQ +   TLG
Sbjct: 302 GDLEKEEVRRLITEEKVRPDGRKVDEVRPLDAQVDLLPRVHGSAMFTRGETQVLSACTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L    +  FM HYNF P   GE  RMG+P RREIGHG L  RA+  V+P 
Sbjct: 362 ALGEVQKIDGLGMEDQKRFMHHYNFPPYCVGETGRMGSPGRREIGHGALGERALRQVIPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+V+E+ ES+GSSS A++C S++ALM AGVPIS PVAG+AMGLVK G+++ I
Sbjct: 422 ETEFPYTIRVVAEVLESNGSSSQASICASTMALMAAGVPISNPVAGVAMGLVKKGENYTI 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAGT +GI A+QMD+KI GI++ I+  AL QAK  R  I++ M
Sbjct: 482 LTDIQGMEDHLGDMDFKVAGTKNGICALQMDIKIDGITKEILQEALAQAKVARGQIMDCM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVK 594
              +SE R  L  + P+V +M I P+QI++VIG GG +I  I+ ++   K++IDD+G V 
Sbjct: 542 MSAISEPRDHLSPYAPKVAMMKIEPEQIKDVIGKGGDMINKIIAESDNVKIDIDDEGNVT 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I   S   I+ A  MI+ +T   EV +I+ G+ V+V +  AF+      +G +H+  ++ 
Sbjct: 602 IYHYSQEAIDHAMGMIKDLTRKVEVGEIFDGKAVRVEEKYAFIELFPGTNGFLHVKDVAW 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +R  K SDV+K GDTV VK+    D+G + +S K +     KPIV
Sbjct: 662 DRTNKVSDVIKLGDTVKVKVTQITDKG-VNVSRKALLP---KPIV 702


>gi|56808519|ref|ZP_00366256.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus pyogenes M49 591]
 gi|209560089|ref|YP_002286561.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           NZ131]
 gi|226704825|sp|B5XIK4|PNP_STRPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209541290|gb|ACI61866.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           NZ131]
          Length = 710

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/694 (39%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGINYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|15675748|ref|NP_269922.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           M1 GAS]
 gi|71911473|ref|YP_283023.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS5005]
 gi|81533345|sp|Q99XZ5|PNP_STRP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13622969|gb|AAK34643.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes M1 GAS]
 gi|71854255|gb|AAZ52278.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 710

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/694 (39%), Positives = 434/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++       L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDVDLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|71904310|ref|YP_281113.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS6180]
 gi|94991237|ref|YP_599337.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10270]
 gi|122986981|sp|Q1JEW6|PNP_STRPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123747743|sp|Q48RA2|PNP_STRPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71803405|gb|AAX72758.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|94544745|gb|ABF34793.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 710

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/694 (39%), Positives = 435/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
 gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
          Length = 736

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/718 (44%), Positives = 466/718 (64%), Gaps = 23/718 (3%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
            +   E+  AGRPL LE GR+ARQ+  AVLA YG+TVVL T       ++G DFFPL V+
Sbjct: 5   KILRKEMILAGRPLVLEVGRVARQASSAVLAKYGDTVVLVTATMAPEPREGIDFFPLLVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ER YAVGKIPGG+LRRE +P E  +L +R+IDRSIRPLF K  +N+  V+  ++  D 
Sbjct: 65  YEERHYAVGKIPGGFLRREGKPGEKAVLSARLIDRSIRPLFPKKMRNDVHVVATILSVDQ 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGT 181
             +P + +M+ ASAAL LS +PF GP+ G  V  ++G+ VLNP +++++ SL  L V+GT
Sbjct: 125 NCAPEITAMIGASAALTLSEIPFAGPIGGVIVGLVDGELVLNPTVEQEEKSLLHLVVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC------AKEPIVIDSK 235
           ++AV+MVE  A ++ ED V++AI FGH   K +   I  L +        + +      +
Sbjct: 185 KEAVVMVECGAREVPEDKVVEAIEFGHQTVKEIAAFIETLREEALALGLASPKKEFEFPE 244

Query: 236 DFSKLEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
              +L E +  + +  LR +         +K  R    ++LK ++V+    ++    E  
Sbjct: 245 PPEELREAVKAVAEPALREAYRWYASARLDKKARESHTENLKNELVAKLLEQYPEE-EAT 303

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I  +  +I+ +VVR ++  +++R DGR  + +R +S +VGLL RTHGS+LF RG TQ + 
Sbjct: 304 IKELIAEIERRVVRELIAKERIRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLS 363

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           VVTLG   DEQ +D L   +   FM HYNF P +TGEV  + +P RREIGHG L  RA+ 
Sbjct: 364 VVTLGAVGDEQILDDLDLEESKRFMHHYNFPPFSTGEVRPIRSPGRREIGHGALVERALE 423

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            V+P    FPYT+R+VSE+ ES+GS+SMA+VC SSLALMDAGVPI  PVAGIAMGL+K+ 
Sbjct: 424 AVIPDEDAFPYTIRVVSEVLESNGSTSMASVCASSLALMDAGVPIKAPVAGIAMGLIKEE 483

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+FI+L+DI G EDHLG MDFKVAGT++GITA+QMD+KI G+++ I+  AL QA+  RL+
Sbjct: 484 DEFIVLTDIQGLEDHLGDMDFKVAGTEAGITALQMDIKIAGVTKEILATALAQAREARLY 543

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M + L   R +L  + PRV  + I PD+IR+VIG GGK IR I+E TG +++++DD
Sbjct: 544 ILEVMRRALPAPRPELSPYAPRVLSLVINPDKIRDVIGPGGKTIRKIIELTGVEIDVEDD 603

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARD 644
           G + I + S +  + A E+I+++T    V ++Y G+V +V DFG FV           ++
Sbjct: 604 GRIYITAPSESAGQQALEIIKNLTAEVAVGQVYLGRVTRVTDFGCFVEIIPGVLGLPGKE 663

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS----MKVVDQNTGKPI 698
           GLVHISQ++  +  +  +VVKEGD V VK++ +D +G+++LS    ++++ +  GK I
Sbjct: 664 GLVHISQMAPLKGKRIEEVVKEGDQVLVKVIGYDSQGRLRLSQKEALRMLAEKGGKRI 721


>gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
           35580]
 gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
           35580]
          Length = 703

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/685 (42%), Positives = 455/685 (66%), Gaps = 4/685 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V  +     L LETG +A+Q++GA+ A YG T VLATV    +  +G D+ P+TV+Y 
Sbjct: 8   QRVTYKIGNEELILETGHLAKQANGAIYAQYGGTAVLATVCASSTAVEGLDYVPVTVDYN 67

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF K +  E Q++   +  D+ +
Sbjct: 68  EKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEKAFGREIQIVPTCISSDMIN 127

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++++A+SAA+++S +PF GPV GA+V Y++G++V+NP   + ++  +++ V+GT +
Sbjct: 128 PPDILAVIASSAAVVISDIPFNGPVAGARVAYLDGEFVINPTFSQIEKADMEIVVAGTAE 187

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            + MVE  A+++SE+++L A+   H   K +    ++L   C KE + +   + +   ++
Sbjct: 188 GITMVEGGAHEVSEEIMLKALEKAHEFIKAMCALQNELRAACGKEKLPLAPVNATLANKD 247

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV-FEDIQAK 301
            +      +L  + +   K  R +  D ++K +   ++ + +   + ++ +  F+D++  
Sbjct: 248 AIYAKAYPELSKALYTKGKVERREACDAIRKALAEEYAEQLADETQAKLFAALFDDMEYH 307

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R  +L+K +R+DGR  E +R I+ ++G+L R HGS++F RG+TQ++ VVTLGT  DEQ
Sbjct: 308 ILRENILEKGLRVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQ 367

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             D + G +R +F++HYNF P + GEV R+G   RREIGHG LA R++ P++P    FPY
Sbjct: 368 VYDDIEGDRRENFILHYNFPPYSVGEVGRLG-TGRREIGHGHLAHRSLMPMIPSREAFPY 426

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSEI ES+GSSSMATVCG +L+L+ AGVP+ KPVAGIAMGL+ DG  F +LSDI G
Sbjct: 427 TIRVVSEILESNGSSSMATVCGGTLSLLHAGVPMKKPVAGIAMGLITDGSRFAVLSDILG 486

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +EDHLG MDFKVAGT  GIT  QMD+KI G+S  IM  AL+QAK+GRLHIL  M++ +S+
Sbjct: 487 EEDHLGDMDFKVAGTAEGITGFQMDIKIAGVSAEIMKKALEQAKKGRLHILGIMNQTISK 546

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
              Q+ ++ PR+E + IP D+I  +IG GGK+I+ + EQ    +N ++DGTV I     +
Sbjct: 547 PSEQVSKYAPRIETLKIPVDKIGALIGPGGKIIKALSEQYHVTINTENDGTVTIYGRDSS 606

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A+  +  I + PEV +IY+G V  + DFGAF+     ++GL HIS+LS  R+ K +
Sbjct: 607 SAIGAKAAVIGIVEDPEVGRIYEGTVKCIKDFGAFIEILPGKEGLCHISKLSRNRIEKVT 666

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLS 686
           DV++EG  V VKLL+ D  G++ LS
Sbjct: 667 DVLQEGQKVPVKLLEIDKLGRLNLS 691


>gi|21911212|ref|NP_665480.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS315]
 gi|28896590|ref|NP_802940.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           SSI-1]
 gi|81758877|sp|Q8K5T4|PNP_STRP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21905424|gb|AAM80283.1| putative polynucleotide phosphorylase alpha chain [Streptococcus
           pyogenes MGAS315]
 gi|28811844|dbj|BAC64773.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes SSI-1]
          Length = 710

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/700 (39%), Positives = 438/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTATVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  SDV++ G+ V VK++  D++G++  SMK +     K
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKALIPRPPK 701


>gi|306826612|ref|ZP_07459917.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           ATCC 10782]
 gi|304431190|gb|EFM34194.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           ATCC 10782]
          Length = 710

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/694 (39%), Positives = 437/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|288940255|ref|YP_003442495.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
           DSM 180]
 gi|288895627|gb|ADC61463.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
           DSM 180]
          Length = 699

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/693 (51%), Positives = 475/693 (68%), Gaps = 4/693 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E ++  + ++LETG IARQ+DGAVL    +TVVL TVV D+     +DF PLTV Y
Sbjct: 5   PIVKEFQFGNQTVRLETGEIARQADGAVLVNMDDTVVLVTVVVDKRPGAERDFLPLTVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+TYA G+IPGG+ RRE RP+E EIL +R+IDR IRPLF + + NE Q+I  V   +  
Sbjct: 65  QEKTYAAGRIPGGFFRREGRPSEGEILTARLIDRPIRPLFVEGFCNEVQIIATVKSLNPA 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ--GSLDLFVSGT 181
            +P V +++ ASAAL LSG PF GP+  A+V Y NG+Y+LNP L        LDL V+GT
Sbjct: 125 VNPEVPALIGASAALALSGAPFNGPIAAARVGYKNGEYILNPALTGLNPDSDLDLVVAGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
             AVLMVE EA  LSE+++L A++FGH + + VI+AI +LA    K  +       +  L
Sbjct: 185 DKAVLMVESEARGLSEEIMLGAVLFGHEQMQVVIQAIRELAAEAGKPAMDWTPHAVNPVL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
            E +     + +  +  I EK  R   +   +  +V    + E  +W E ++ +  E ++
Sbjct: 245 TEAVRLAGGDAIAAAYRIKEKQARYTALGAARTAIVEQLCAGETPAWTESQVKAAIEALE 304

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +  VR  +L  + R+DGRD++TVR I+ + G+L RTHGS+LF RG+TQA+V+ TLGT  D
Sbjct: 305 STTVRESILAGEPRIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERD 364

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D+L G +R  FM+HYNF P   GE+ R+G+P RREIGHGRLA+R +  V+P   +F
Sbjct: 365 SQIIDALEGERREHFMLHYNFPPFCVGEIGRVGSPKRREIGHGRLAKRGVLAVMPSIEEF 424

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY++R+VSEITES+GSSSMA+VCG+SLALMDAGVPI  PVAG+AMGL+K+G+ F +L+DI
Sbjct: 425 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGERFAVLTDI 484

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  GI A+QMD+KI GI+  IM +AL QAK GRLHIL EM+KV+
Sbjct: 485 MGDEDHLGDMDFKVAGTADGINALQMDIKIEGITREIMEIALAQAKEGRLHILGEMNKVI 544

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R+++ E  PR+  + I P++IR+VIG GG VIR I E+TGA ++I+DDG VKI S  
Sbjct: 545 DSHRVEMSEHAPRIIEIKIHPEKIRDVIGKGGSVIRAITEETGATIDINDDGVVKIFSVV 604

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A  E A+  IR IT   EV K+Y+G+V ++MDFGAFV     RDGLVHISQ+  ERV  
Sbjct: 605 KAAGEEAKRRIRLITADVEVGKVYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQS 664

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            SD +KEGD V VK+L+ D +G+I+LSMK V+ 
Sbjct: 665 VSDKLKEGDVVRVKVLEVDKQGRIRLSMKAVEP 697


>gi|239947698|ref|ZP_04699451.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921974|gb|EER21998.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 748

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/696 (47%), Positives = 484/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V  +  K+G  FFPLT
Sbjct: 1   MFNEITKSVTWDGKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + +     + 
Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  ++++    I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIKQVFVIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  EV  M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEVMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVC SSLALM AGVPI  PVAGIAMGL+K+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGKVI+ I E +GAK++I DDG+V + +
Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNTDKD 696


>gi|323126485|gb|ADX23782.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 710

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/694 (39%), Positives = 438/694 (63%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ETIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|156743526|ref|YP_001433655.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus
           castenholzii DSM 13941]
 gi|257096706|sp|A7NPZ1|PNP_ROSCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|156234854|gb|ABU59637.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus castenholzii
           DSM 13941]
          Length = 746

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/695 (44%), Positives = 456/695 (65%), Gaps = 8/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+V ++ AGR L LETGR A Q++GAV+  YG+T++LAT V  +  +   DFFPLTV+Y
Sbjct: 6   IHSVSMDLAGRTLTLETGRFAEQANGAVVVRYGDTMLLATAVASKEPRTDTDFFPLTVDY 65

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GKIPG + +RE +PTE  IL +R+ DR +RPLF + Y+NE Q+I+     D+ 
Sbjct: 66  EEKMYAAGKIPGSFFKREGKPTEGAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMV 125

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
           + P  +S++AASAAL +S +PF GPV   QV YI+G   +NP   +     LDL V+GT+
Sbjct: 126 NDPAPLSIIAASAALAISDIPFLGPVGAVQVGYIDGALQINPPMPNMANSDLDLVVAGTK 185

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           +AVLMVE  AN+L E+V+L+A+I GH  CK + +  ++L K+  +     +     + LE
Sbjct: 186 EAVLMVEAGANELPEEVMLEAVIQGHQVCKQICDLQNELVKLAGRPKKEFVPPPVDTSLE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE----GEIVSVFED 297
           E + Q +   L  +     K VR  Q + LK++++++F+++            + + FE+
Sbjct: 246 EAIQQWLGNRLYEAITDANKMVRDAQTEALKREVIAHFTADEPEEELEARTAAVSAAFEN 305

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  + VR ++L++  R+DGR  + +R IS +VGL+ R HGS LF RG TQ + + TLG+ 
Sbjct: 306 ILYEEVRRMILERGERVDGRGPKDIRPISVEVGLIPRVHGSGLFTRGQTQVLTLATLGSP 365

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            +EQ +D L       ++ HYNF P +TGE+ R+G+P RR+IGHG LA R++  VLP   
Sbjct: 366 AEEQRLDDLGIETAKRYIHHYNFPPFSTGEIRRLGSPRRRDIGHGALAERSLLAVLPPKE 425

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIIL 476
           +FPYT+R+VSE   S+GSSSMA+VCGSSLALMDAGVPI  PVAGIAMGL+   D  + +L
Sbjct: 426 EFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIRAPVAGIAMGLITGKDGRWRVL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDHLG MDFKVAGT  GIT +QMD+K  GI+  IM  A  QA+ GRLH+L +M+
Sbjct: 486 TDIQGIEDHLGDMDFKVAGTAKGITGLQMDIKTTGITYEIMREAFAQAREGRLHVLEKMN 545

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+SE R +L  + PR+  + I P++I  +IG GGK IR I E TGA+++I++DG V I+
Sbjct: 546 AVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTIRSITEATGAQIDIEEDGRVYIS 605

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           ++  A  + A  M+ ++T   +V  I+ G+VV++M FGAFV+    +DG+VH+S+L   R
Sbjct: 606 TADAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSELDVGR 665

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           V    DV+K GD + V ++  +   GK+ LS + +
Sbjct: 666 VENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRAL 700


>gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum
           NCIB 8327]
 gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum
           NCIB 8327]
          Length = 732

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/723 (45%), Positives = 467/723 (64%), Gaps = 29/723 (4%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFP 58
           MF     EI+   G+ + +ETG++A+Q+DG+ +    +T+VLATVV  ++     QDFFP
Sbjct: 1   MF--IKKEIDLGQGKVITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFP 58

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           L V Y+E+  A GK PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+II+V+
Sbjct: 59  LQVEYREKYSAAGKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVI 118

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
             D  +   V+  +AASAA+M+S +PF  P+   +V  INGQ+++NP  +E Q   LD+ 
Sbjct: 119 SSDTINDADVLGGIAASAAIMVSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDLDIC 178

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKD 236
           + GT+D + M+E E  ++SE  +LDAI FGH   K +     +LA   AK       +  
Sbjct: 179 IGGTEDTICMLEGEMKEISEAEMLDAIKFGHEAIKKLCAFQKELAAEVAKPKRAFAPTVA 238

Query: 237 FSKLEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSY-------FSSEHSSWN- 287
            ++L   +      +L+   + P  K  R  +   + K+ ++         ++E  + N 
Sbjct: 239 PAELVAFIEANCAAELKALAYTPLAKEERSDRTKAIYKETIAKTLEHFSSITAEEIAANP 298

Query: 288 -------EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
                  E  I     D++ KV+R ++LD   R+DGR  E VR IS ++GL+ R HGS+L
Sbjct: 299 EKALCQSEHMIDECIHDVEKKVMRHMILDDSKRLDGRTLEQVRPISIELGLIPRAHGSAL 358

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQA+V +TLGT++D Q VD+L+  +   FM+HYNF P + GE  R+G   RREIG
Sbjct: 359 FTRGETQALVTLTLGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGETGRVGGTGRREIG 418

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RAI  V+P   +FPYT+R+VS+I ES+GSSSMA+VCG +LA MD G+P+ KPV+
Sbjct: 419 HGNLAERAIKMVMPAEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVS 478

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GIAMGL+K+GD + +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  A
Sbjct: 479 GIAMGLIKEGDRYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETA 538

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L+QA++GRLHIL+ M++ + ESR  +G++ PR+  + IP D I  VIG GG+ IR I E+
Sbjct: 539 LEQARKGRLHILDVMTEAIPESREDIGKYAPRLTSIQIPVDAIGMVIGKGGETIRSITEE 598

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHF 639
           TGA++NIDDDGTV IA SS    +AA E I+++   PEV  IY G+V  + D  GAFV F
Sbjct: 599 TGAEINIDDDGTVTIACSSPEGTKAAVETIKTLVSKPEVGTIYMGKVRDIRDELGAFVEF 658

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQNT 694
               DGLVHIS+++ ER+AK SDV+K G+ V VKL+D   D R    K  LS+K +  +T
Sbjct: 659 LPKTDGLVHISEIARERIAKVSDVLKPGERVKVKLIDIRKDPRTGKTKFALSIKALL-DT 717

Query: 695 GKP 697
            +P
Sbjct: 718 DQP 720


>gi|50915014|ref|YP_060986.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10394]
 gi|81371590|sp|Q5X9W0|PNP_STRP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50904088|gb|AAT87803.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 710

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/694 (39%), Positives = 433/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGNPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QV   V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum
           reducens MI-1]
 gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           reducens MI-1]
          Length = 740

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/706 (45%), Positives = 460/706 (65%), Gaps = 20/706 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           EI   GR L LETGR+A+Q+ GAVL TYGETVVL T    ++ +D  DFFPLTV+Y+ER 
Sbjct: 10  EISLGGRTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNTRD-IDFFPLTVDYEERL 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YAVGKIPGG+++RE RP+E  IL  R+IDR IRPLF K  +NE QV+  VM  D +++P 
Sbjct: 69  YAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVMSVDQDNAPE 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           + +M+ ASAAL +S +P + P+ G  V  ++GQ+V+NP + + +   + L V+GT DAV+
Sbjct: 129 IAAMIGASAALHISKIPLKKPIGGVIVGRVDGQFVINPMVRQAENSDMHLVVAGTDDAVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDF-SKL 240
           MVE  A ++ E  +L+ I++GH + K +++ I            A E + I    F S +
Sbjct: 189 MVEAGAKEVPESEMLEGIMYGHEKVKEIVKFIEDFRTEALGMGLAFEKMEIPEPQFDSNM 248

Query: 241 EEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            E +  + +E +R +          K  R   +D++   +   F  +    N  E+  + 
Sbjct: 249 SEAILTIAEEAIREAVLHCSREKLTKKQREVYMDEVMSGLQEKFLEQFPE-NPKEVTMLI 307

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E  + KVVR ++   K+R+DGR  + +R IS +VG+L RTHG+ LF RG TQ + V TLG
Sbjct: 308 EKAEKKVVRRIITHDKLRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILSVATLG 367

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  +EQ +D L   +   +M HYNF P +TGE   M +P RREIGHG LA RA+ P++P 
Sbjct: 368 SISEEQILDGLGVEESKRYMHHYNFPPFSTGETKPMRSPGRREIGHGALAERALEPMIPP 427

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+VSE  ES+GS+SM +VCGS+L+LMDAGVP+  PVAG+AMGL+ + D F +
Sbjct: 428 EEVFPYTIRVVSEAIESNGSTSMGSVCGSTLSLMDAGVPLKAPVAGVAMGLIMEEDQFTV 487

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFKVAG+ +G+TA+QMD+KI GI+  +   AL+QA RGR+ IL +M
Sbjct: 488 LTDIQGLEDHLGDMDFKVAGSANGVTALQMDIKIPGITREVFEQALEQAHRGRMFILGKM 547

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +VLS  R ++    P +   +I PD+IR++IG GGK+I+ +VE+TGA ++I+DDG V I
Sbjct: 548 LEVLSTPRAEISVHAPAIIRTSIHPDKIRDIIGPGGKIIKKLVEETGADIDIEDDGRVFI 607

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGLVHI 649
           A+    + + A E+I+SIT   +V K+Y G+V +V DFG FV           ++GLVHI
Sbjct: 608 AAVDREKGKRALEIIQSITAEVQVGKLYNGKVTRVTDFGCFVEVIPGVMGLPGKEGLVHI 667

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SQL+ +RV KT D+VKEG+ + VK + +D +G++KLS K   ++ G
Sbjct: 668 SQLAFQRVEKTEDIVKEGEVIAVKAIGYDQQGRLKLSKKEAMRDMG 713


>gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii
           RML369-C]
 gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
 gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii
           RML369-C]
 gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
          Length = 744

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/696 (45%), Positives = 475/696 (68%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+     +EW G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G  FFPLT
Sbjct: 1   MFNEIIKTVEWGGKTLELSTGKIARQADGAVTVKMGNSVLLCTAVTAAKAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V   V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETFVTCTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++ L+P LD  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFFLHPTLDLLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D+V+MVE EA+ LSE+ +L A+ FG +  +PV+  I +LA    K  + +     ++
Sbjct: 181 GTNDSVMMVESEAHLLSEEQMLAAVKFGFDSFQPVVNIIKELAAEAKKSKLEMQDLYPAE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L+ E+ ++  +++  +  I  K  R   ++ + +K++ +F+   E   +N  +I S  + 
Sbjct: 241 LKNEIKKLFAKEIEQTFAIKSKQERSTNLELIPEKVLKHFADDIESKKYNNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++ ++R  +L K  R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 VESDILRGNILQKNKRIDGRTTTDIRQITCEVGLLPCAHGSALFTRGETQSLVSSTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +DSL G  +  FM++Y F P +  E   M AP RRE+GHG+LA RA++PVLP   
Sbjct: 361 LDEQIIDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPGRREVGHGKLAWRAVNPVLPTKT 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+ + F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEDEKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G++  IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKIRGVNFEIMKIALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   ++ +  P    + +  D+IR++IG GGKVI+ I E +GAK++I DDGTV I +
Sbjct: 541 VISKPNNEMSKNAPSTTTLKVDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + +++I   PE+ +++ G V+K++D GAFV++ G +DG VHIS+++ ER+
Sbjct: 601 SDKDKLKVALDKVKAIAIEPEIGEVFNGTVMKILDSGAFVNYLGNKDGFVHISEIAEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                V+K+GD V VKL+ FD++GK KL++K  +++
Sbjct: 661 ESVGSVLKQGDIVKVKLIGFDNKGKAKLTIKNAEKD 696


>gi|25010273|ref|NP_734668.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae NEM316]
 gi|77413798|ref|ZP_00789978.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
 gi|81457782|sp|Q8E7F6|PNP_STRA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23094625|emb|CAD45843.1| polynucleotide phosphorylase, alpha chain [Streptococcus agalactiae
           NEM316]
 gi|77160160|gb|EAO71291.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
          Length = 709

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/700 (40%), Positives = 438/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFEMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+       L+ +  + EK  R    + +K+ ++  + + ++   E      ++  + E
Sbjct: 242 AEIIATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A +  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGEAQIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLH 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 GAIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  +DV++ G+ V VK++  DD+G++  SMK +     K
Sbjct: 662 TANVADVLEIGEEVDVKVIKIDDKGRVDASMKALLPRPPK 701


>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
 gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
          Length = 713

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/695 (43%), Positives = 441/695 (63%), Gaps = 11/695 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
             E E AGR L LETG+ A+Q+ G+VL  YG+TVVLAT        +  DF PLTV ++E
Sbjct: 13  RYETEIAGRTLILETGKYAKQASGSVLVRYGDTVVLATAQASDEPVEA-DFLPLTVEFEE 71

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E QVI+ V+  D ++ 
Sbjct: 72  RHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVTVLSADQKNP 131

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P ++  +AASAALMLS +P+EGPV   +V  + GQ VLNP L E ++ +LDL V+G++DA
Sbjct: 132 PDILGPIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEESALDLVVAGSRDA 191

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE- 243
           +LMVE  A ++ E+ ++ A+ F H E +P+++   ++A+   K  +     +    EE+ 
Sbjct: 192 ILMVEAGAQEVDEETLVQALEFAHREMQPILDLQERMARELGKPKMAWTPPETLPEEEKE 251

Query: 244 --MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK-MVSYFSS-EHSSWNEGE---IVSVFE 296
                 +++ L        K  R + +    +  ++      E  + +EG+     S F+
Sbjct: 252 ALYRLALEKGLSQVLQTASKGERSRALSAFAESLILEALPRLEDGAPDEGKRPLYESAFD 311

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +I  + +R ++L++  R DGR  + +R I  +V +L R HGS++F RG+TQ +  VTLGT
Sbjct: 312 EIVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGT 371

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D L   + + F++HYNF P +TGEV R+   SRRE+GHG LA+RA+  VLP  
Sbjct: 372 GRDEQIIDDLGIDETDPFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALRAVLPSQ 431

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+V ++ ES+GSSSMATVC  SLALMDAGVP+  PVAG+AMGLV + +  +IL
Sbjct: 432 EAFPYTIRVVGDVLESNGSSSMATVCAGSLALMDAGVPVKAPVAGVAMGLVWENEKAVIL 491

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  RL IL+ M 
Sbjct: 492 TDILGLEDALGDMDFKVAGTRQGVTALQMDNKVGGLPREVLKEALLQAREARLKILDLME 551

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            VL   R  L  F PR+  + +P D+I  VIG GGK +R + E+ G +V+I++DGT++I 
Sbjct: 552 MVLPAPRPSLKPFAPRILSLKVPVDKIGIVIGPGGKNVRAL-EELGVEVDIEEDGTIRIY 610

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS + + E A+  I  +T   +V +IY+G V ++  FGAF+      +GL+HISQ++  R
Sbjct: 611 SSDMEKAEKAKARIEELTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAPGR 670

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V +  D +K GD + VK+   D++GKI L    ++
Sbjct: 671 VKRVEDHLKVGDVIKVKVHRIDEKGKIDLIRPELE 705


>gi|170756696|ref|YP_001781955.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           B1 str. Okra]
 gi|226702639|sp|B1II43|PNP_CLOBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169121908|gb|ACA45744.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B1
           str. Okra]
          Length = 702

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/691 (40%), Positives = 434/691 (62%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           + V+MVE    ++ E+ +  AIIFG  ECK ++    +      K        K   ++E
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIIFGFEECKNIVAFQEEAVAKFGKTKNEPVLYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    Q +
Sbjct: 242 KEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KGADIAEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 IVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +FPY
Sbjct: 361 ILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|168184618|ref|ZP_02619282.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Bf]
 gi|237795848|ref|YP_002863400.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           Ba4 str. 657]
 gi|259534115|sp|C3L0B0|PNP_CLOB6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182672277|gb|EDT84238.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Bf]
 gi|229263835|gb|ACQ54868.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Ba4 str. 657]
          Length = 702

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/691 (40%), Positives = 432/691 (62%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           + V+MVE    ++ E+ +  AI+FG  ECK ++    +      K        K   ++E
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGKTKNEPVLYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    Q +
Sbjct: 242 KEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KGADISEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++  R DGR    VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 IVRNMLLNEDRRPDGRAFNEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +FPY
Sbjct: 361 ILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|19746859|ref|NP_607995.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS8232]
 gi|81632438|sp|Q8NZC6|PNP_STRP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|19749100|gb|AAL98494.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes MGAS8232]
          Length = 710

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/694 (39%), Positives = 436/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   ++          ++  + E
Sbjct: 242 ADIVAKYNAQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKSFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TTNVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
           F0421]
 gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
           F0421]
          Length = 700

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/686 (43%), Positives = 453/686 (66%), Gaps = 4/686 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            HTV  +     L LETGR+A+Q++GA+ A +G + VLATV      ++G D+ PLTV+Y
Sbjct: 2   KHTVSYKIGDSELILETGRLAKQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF K +  + Q+I   +  D+ 
Sbjct: 62  NEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEKDFGRDIQIIPTCVSSDMI 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P +++++A+SAA+++S +PF GPV  A++ Y+NG+YV+NP   + D+  +++ V+GT+
Sbjct: 122 NPPDILAVIASSAAVVISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEMEIVVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           + + MVE  A+++SE+V+L A+   H   K + +   +L   C KE + +       + +
Sbjct: 182 EGITMVEGGAHEVSEEVMLTALEKAHEFIKIICDLQEQLRNACGKEKLPLVPLSVELENK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQA 300
           + +       L  + ++  K+ R    D +K  +   ++ +           ++F+D++ 
Sbjct: 242 QAIHDEAYPRLSEALYVKGKFERRAACDAVKADIAEKYAEQLEDEVQTKLFNTLFDDMEY 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            ++R  +LDK +R+DGR++E +R I+ ++G+L R HGS++F RG+TQ++ VVTLGT  DE
Sbjct: 302 HILRENILDKGLRVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDE 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D + G +R +F++HYNF P + GEV RMG   RREIGHG LA R++ P++P   +FP
Sbjct: 362 QVYDDIEGDRRENFILHYNFPPFSVGEVGRMG-TGRREIGHGYLAHRSLSPMIPSREKFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEI ES+GSSSMATVCG +L+L+ AGVP+  PVAGIAMGL+ DGD + ILSDI 
Sbjct: 421 YTVRVVSEILESNGSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYAILSDIL 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+EDHLG MDFKVAGT++GIT  QMD+KI G+S  IM  AL QAKRGR+HIL  M++ +S
Sbjct: 481 GEEDHLGDMDFKVAGTENGITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQTIS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           +    + ++ PR+E + I  D+I  +IG GGK I+ + EQ    +N D+DGTV I     
Sbjct: 541 KPNADISKYAPRIECVKIAVDKIGALIGPGGKNIKALSEQYQVTINTDNDGTVTIYGKDS 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A+  +  + + PEV +IY+G V K+M+FGAFV     ++GL HIS+LS ERV K 
Sbjct: 601 QSALDAKAAVIGVVEEPEVGRIYQGTVKKIMEFGAFVEILPGKEGLCHISKLSRERVGKV 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLS 686
            DV+KE   + VKLL+ D   ++ LS
Sbjct: 661 GDVLKEEQQIPVKLLEIDKMNRLNLS 686


>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB27]
 gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
 gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
          Length = 713

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/696 (42%), Positives = 442/696 (63%), Gaps = 11/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E+  AGRPL LETG+ A+Q+ G+VL  Y +TVVLAT     +  +  DF PLTV ++
Sbjct: 11  HRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEA-DFLPLTVEFE 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E Q+I+ V+  D ++
Sbjct: 70  ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKN 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++  +AASAALMLS +P+EGP+   +V  I G +VLNP L E ++  LDL V+G+++
Sbjct: 130 PPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAGSKE 189

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--FSKLE 241
           A+LMVE EA ++ E+ ++ A+ F H E +P++E    +A+  AK  +     +    + +
Sbjct: 190 AILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWTPPESLPEEEK 249

Query: 242 EEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVF 295
           E + ++  E  L        K  R + + +  +++++    +       E       S F
Sbjct: 250 EALYRLALERGLSQVLQTASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPLYESAF 309

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +++  + +R ++L++  R DGR  + +R I  +V +L R HGS++F RG+TQ +  VTLG
Sbjct: 310 DEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLG 369

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D L   +   F++HYNF P +TGEV R+   SRRE+GHG LA+RA+  V+P+
Sbjct: 370 TGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPK 429

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVPI  PVAG+AMGLV + +  +I
Sbjct: 430 EEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVI 489

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  RL IL+ M
Sbjct: 490 LTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREARLKILDLM 549

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             VL   R +L  F PR+  + +P ++I  VIG GGK +R + E+ G +V+I++DGTV+I
Sbjct: 550 ETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVRI 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS L     A++ I  +T   +V +IY+G V ++  FGAF+      +GL+HISQ++  
Sbjct: 609 YSSDLNAALEAKKRIEDLTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAPG 668

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV +  D +K GD + VK+   D+RGKI L    ++
Sbjct: 669 RVERVEDHLKVGDVIKVKVHRIDERGKIDLIRPELE 704


>gi|291544643|emb|CBL17752.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. 18P13]
          Length = 706

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/695 (40%), Positives = 431/695 (62%), Gaps = 8/695 (1%)

Query: 1   MFDVHTV-EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF+ + V +  +AGR L +ETG+    ++G+    YG +VV+A V      ++G DFFPL
Sbjct: 1   MFENYKVFKTMFAGRELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+Y+ER YAVGKIPG +++RE +P+E  IL SRM+DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDYEERLYAVGKIPGSFMKREGKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D + SP ++ M+A S A+ +S +P+ GP+ G  V  ++G+ VLNP L++  +  L+L V
Sbjct: 121 VDPDHSPEIMGMIATSIAISISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRNDLNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT   ++M+E  ANQ+ E  ++ AI+ G  E + ++  I  + K   K     +S +  
Sbjct: 181 AGTDKKIVMIEAGANQVDEATMMQAILAGQAENEKMVAFIKDIQKQIGKPKFTFESMEVD 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L + +     + ++ +    +K +R ++++ +K  +   F  ++       I      
Sbjct: 241 HDLFDAIDAFASDRVKFALDTNDKNIREERLNPIKNDIHEKFDPDYPEQ-IAMIDECIYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q K+VR  + +   R+DGR  + +R ++A+VG+L R HGS LF RG TQ + V TLG  
Sbjct: 300 LQKKIVRNWLYE-GKRVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVATLGPV 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D +       +M HYNF   + GE      P RREIGHG LA RA+ PV+P   
Sbjct: 359 SDAQRIDGIDEDVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALEPVIPPVE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFII 475
           +FPY LR+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL+   D D+F+ 
Sbjct: 419 EFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITKPDSDEFMT 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           + DI G ED  G MDFKV GT  GITA+Q+D+K+ G++  I+  AL++ ++ R++IL+E+
Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKGITAIQVDIKVDGLTPAIIEEALEKTRKARIYILDEI 538

Query: 536 S-KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
             K +   R  + EF P++    IP D+IR VIG GGKVI+ I  +   K+++++DG+V 
Sbjct: 539 MLKAIPHYRSSVNEFAPKMMQTKIPVDKIREVIGQGGKVIQKISAECEVKIDVNEDGSVF 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I+   L + + A +++ +I   PEV  IYKG+VV++M FGAFV     +DGLVHIS+L  
Sbjct: 599 ISGVDLEKTKKALQIVETIAHDPEVGAIYKGKVVRLMSFGAFVEIAPGKDGLVHISKLDK 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +RV K  DVV  GD + VK+++ D +G+I LS K 
Sbjct: 659 DRVEKVEDVVSIGDEIVVKVVEIDKQGRINLSRKD 693


>gi|322517679|ref|ZP_08070542.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123667|gb|EFX95259.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis ATCC 49124]
          Length = 745

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E+ +AGRPL +E G +A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY
Sbjct: 3   KQTFEMTFAGRPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATA-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   +     LDL V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQLDLTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++  +  ++L+
Sbjct: 182 EAINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDAELK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+     + L  +  + EK  R      +K+++++ +    +   + E     +V + E
Sbjct: 242 VEIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLTSYQERFAEDEDKETILRDVVEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSI 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRRGITALQMDIKISGITPAILEEALAQAKVARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I 
Sbjct: 542 AVIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ ER
Sbjct: 602 SSDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWER 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             +  DVVK GD V VK++  D++G+I  S+K +     K
Sbjct: 662 TERVEDVVKVGDMVTVKIIKIDEKGRIDASIKTLLPKPEK 701


>gi|139474436|ref|YP_001129152.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           str. Manfredo]
 gi|187611301|sp|A2RGH2|PNP_STRPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134272683|emb|CAM30954.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           str. Manfredo]
          Length = 710

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/694 (39%), Positives = 435/694 (62%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQTFTTTFAGKPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  V +M  +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G++
Sbjct: 122 ASAPVAAMFGSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            ++       L+ +  + EK  R    + +K+ + + +   +           ++  + E
Sbjct: 242 ADIVAKYNVQLQKAVQVEEKKAREAATEAVKEMVKAEYEERYVEDENLATIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGETQIIDGLAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E   +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I 
Sbjct: 542 ATIAEPHPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +E+I  +    +V ++Y  +V+++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKEIIAGLVREAKVGEVYHAKVIRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            A  SDV++ G+ V VK++  D++G++  SMK +
Sbjct: 662 TANVSDVLEVGEDVDVKVIKIDEKGRVDASMKAL 695


>gi|315185936|gb|EFU19700.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6578]
          Length = 709

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/694 (46%), Positives = 466/694 (67%), Gaps = 3/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V I+  GR L L TG++ARQ++GAV A YG T VLAT      +K+  DF PL+V+Y 
Sbjct: 3   HSVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP E EIL+SR+IDR +RPLFSK +K E Q+I   +  D  +
Sbjct: 63  EKYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           +P VV++VAASAA+ +S +PF+GPV   +V  ++G +V+NP L++ + S LD+ V+GT +
Sbjct: 123 TPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            + MVE  A ++SED +++AI         + +A  +L++   K+ + +  ++   L++E
Sbjct: 183 GITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELSERAGKKKLPLQEEESFPLKDE 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +    +  L  +CF+  K  R K I   ++++ +YF        E    +V E+++ ++V
Sbjct: 243 VIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGERIPDEQERAFNAVIEELEREIV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L++ +R DGR  E +R I+ +VG+L RTHGS+LF RG+TQA+ + TLGT  DEQ +
Sbjct: 303 RSSILERGIRTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALAITTLGTVFDEQIM 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L G +R +FM+HYNF P + GEV R+    RREIGHG LA RA+  VLP    FPYTL
Sbjct: 363 DDLEGDKRENFMLHYNFPPFSVGEVGRL-YTGRREIGHGHLAHRALEAVLPSKDDFPYTL 421

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMATVCGS+L+L++AGVPI KPVAGIAMGLV DG+  +ILSDI G+E
Sbjct: 422 RVVSEILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSDILGEE 481

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT+ GITA QMD+KI  I    M  AL+QA+RGRLHIL  M++ +SE R
Sbjct: 482 DHFGDMDFKVAGTEEGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPR 541

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L ++ PR+   A+ P++I  +IG  GK IR I E     +NIDDDG++ I S    + 
Sbjct: 542 PELSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISETFDVTINIDDDGSIVIYSKQKEKA 601

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A+  I  + + PEV K+Y G+V +++DFGAF+ F   R+GL HISQ+S +R+    DV
Sbjct: 602 EQAKAYIDKMLEEPEVGKVYTGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHDV 661

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           VK    V V++L+ D  G++ L+M ++D++  K 
Sbjct: 662 VKLNQEVPVRILEIDRLGRVNLTM-LIDESMAKE 694


>gi|28210966|ref|NP_781910.1| polynucleotide phosphorylase/polyadenylase [Clostridium tetani E88]
 gi|75542500|sp|Q895J3|PNP_CLOTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28203405|gb|AAO35847.1| polyribonucleotide nucleotidyltransferase [Clostridium tetani E88]
          Length = 705

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/689 (42%), Positives = 440/689 (63%), Gaps = 5/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H +E + AGR LK+E G++   S+ A+L +YG+TVVL      +  +DG DFFPL+V Y+
Sbjct: 3   HVLETDIAGRTLKVEYGKVGMLSNCAILVSYGDTVVLINANASKEPRDGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE RPTEN IL +R IDR +RPLF K Y+N+ Q++  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGRPTENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVESDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++M  AS AL LS +PF  PV    V  ING ++LNP   + ++  L+L VS T++
Sbjct: 123 QPDILAMNGASLALCLSSIPFTTPVANVSVGLINGDFILNPTQSQREESILNLTVSATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+M+E  A ++ ED + +AI FG  +C+ ++E   +  +   KE +        K +E+
Sbjct: 183 RVMMIEAGAEEVDEDTMYNAIRFGFEQCQKIVEFQEEAMRRFGKEKVEPVLYLVDKDIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+ +     ++ + +I +K +R ++ID++K+K+   F  ++   N+ +I      +Q +V
Sbjct: 243 EVREFAFPMVKEAMYISDKDLRNEKIDEVKEKVKEEFEEKYPE-NDSDISEALYKMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +K R D R  + +R IS +VGLL RTHG+ LF RG TQ +   T+G   D Q 
Sbjct: 302 VRNMILREKRRPDERAFDEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLADVQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS+   +   +M HYNF   + GE   +  P RREIGHG LA +A+ P++P    FPYT
Sbjct: 362 LDSIEDEEFKRYMHHYNFPSYSVGETRPLRGPGRREIGHGALAEKALEPLIPSEEDFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV + D  +  IL+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTNDDLTEEKILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S+N +   L +AK  R++IL ++ + + 
Sbjct: 482 GIEDFFGDMDFKVAGTEKGITALQVDTKISGLSDNCIKETLIKAKDARMYILGKIKECIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E R +L  + PRV  M I P++IR+VIG GGK I  I+ +TG +++I +DG + + SS  
Sbjct: 542 EHRAELSPYAPRVYTMTIAPEKIRDVIGAGGKTINKIIGETGVQIDIKEDGKIYVMSSDS 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A +MI  +T   E  +IY G+V +  +FGAFV     ++GLVHIS+L   RV K 
Sbjct: 602 VGANRALKMINDLTKDVEAGEIYLGKVTRTTNFGAFVEILPGKEGLVHISKLDFTRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            DVV  GD + VK+ D DD+G+I LS + 
Sbjct: 662 EDVVSVGDEILVKVTDIDDQGRINLSRRD 690


>gi|325111014|ref|YP_004272082.1| polyribonucleotide nucleotidyltransferase [Planctomyces
           brasiliensis DSM 5305]
 gi|324971282|gb|ADY62060.1| Polyribonucleotide nucleotidyltransferase [Planctomyces
           brasiliensis DSM 5305]
          Length = 711

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/693 (42%), Positives = 437/693 (63%), Gaps = 10/693 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNY 63
            +VE E AGR  K  TG IA+Q+ GAVLA +G+TV+L          ++G DFFP+TV+Y
Sbjct: 6   TSVEREIAGRIFKFSTGEIAKQASGAVLAQFGDTVLLVAAQTGP--AREGIDFFPMTVDY 63

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER  A GK PGG+L+RE RP+ +EIL +R+ DR +RPLF K + +E QV   V+  D E
Sbjct: 64  RERFAAAGKFPGGFLKREGRPSTHEILTARLTDRPLRPLFPKSFHDEVQVQSIVLSSDGE 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           +   VVS+  ASAAL LS +PF+GP+   +V  I G+++L P  ++ DQG LDL V+G +
Sbjct: 124 NPSDVVSINGASAALSLSPVPFQGPIGAVRVGMIEGEFILFPTKEQIDQGDLDLVVAGNK 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           +++LM+E    Q+ EDV+ DA++F H     + E   +L K    E    +    +    
Sbjct: 184 ESILMIEGFGRQIPEDVMADALMFAHKGIIELCELQEELVKAAGVEKFEWEEPAENPFIG 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFED 297
           E+ ++    L+ +    EK  R +    +K++++  F  E ++ +E      ++      
Sbjct: 244 EVRELAASKLKAARTNSEKQKRSEAAAAVKEELIEKFFPEGATEDEQGRTLAQLKDAIYK 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  +  R + ++   R+DGR    +R IS +VGL+ R HGS+LF RG+TQ++  +TLGT 
Sbjct: 304 VDKQACRDLTIE-GKRLDGRGPTDLRQISCKVGLVPRVHGSALFTRGETQSLASLTLGTV 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D+Q V+ L G     FM+ YNF   + GEV  +  P RREIGHG LA R++  VLP  +
Sbjct: 363 RDQQRVEDLFGEHTKRFMLDYNFPSYSVGEVRPIRGPGRREIGHGALAERSVQWVLPDES 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+RI+S+ITES+GSSSMA+VC ++LALMDAG+PI +PVAGI++GLVKDGD + +L+
Sbjct: 423 AFPYTIRIISDITESNGSSSMASVCNATLALMDAGIPIRQPVAGISIGLVKDGDKYTLLT 482

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDH G MDFK+AGT  GIT +Q+D+KI GI+E I+   L+QA++ RL +L  M  
Sbjct: 483 DIMGDEDHFGDMDFKIAGTQKGITGIQLDLKIDGINEEIIRGTLEQARKARLELLKAMLT 542

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++    PR+    I P++I  +IG GGK IR + E TG +++I++DGTV IAS
Sbjct: 543 EIRRPRKEISMLAPRILTCKIDPEKIGLLIGPGGKNIRQLQEDTGTQIDIEEDGTVTIAS 602

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS    EAA+  I ++T+   V ++Y G V+ + DFGAF+     +DGL HIS+LS   V
Sbjct: 603 SSGEGAEAAKARIEAMTEEVRVGRVYNGTVIAIKDFGAFIEIAPGKDGLCHISELSDGFV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               DV K GD + VK++  D++ ++KLS K +
Sbjct: 663 KNVGDVCKIGDKMEVKVIAVDEQNRVKLSRKAL 695


>gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
 gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
          Length = 748

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/696 (46%), Positives = 479/696 (68%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DGAV    G +V+L T V     K+G    PLT
Sbjct: 1   MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGLLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YA GKIPGG+ + E + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +
Sbjct: 61  INYREMAYAAGKIPGGFFKHEGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L   + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  +V+MVE EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + + +   + 
Sbjct: 181 GTSGSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +D + +K++++F S  E+  ++  +I S  + 
Sbjct: 241 LKKEIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I++ ++R  +L+K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 IESDILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+G +F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG  GKVI+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPSGKVIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +++ A + I++I   PE+ +I+ G VVKV+D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6192]
 gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6192]
          Length = 709

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/694 (46%), Positives = 464/694 (66%), Gaps = 3/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V I+  GR L L TG++ARQ++GAV A YG T VLAT      +K+  DF PL+V+Y 
Sbjct: 3   HSVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+ +RE RP E EIL+SR+IDR +RPLFSK +K E Q+I   +  D  +
Sbjct: 63  EKYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           +P VV++VAASAA+ +S +PF+GPV   +V  ++G +V+NP L++ + S LD+ V+GT +
Sbjct: 123 TPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            + MVE  A ++SED +++AI         + +A  +L +   KE + +  ++   L++E
Sbjct: 183 GITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELRERAGKEKLPLLEEESFPLKDE 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +    +  L  +CF+  K  R K I   ++++ +YF        E    +V E+++ ++V
Sbjct: 243 VIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGERIPDEQERAFNAVIEELEREIV 302

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L++ +R DGR  E +R I+ ++G+L RTHGS+LF RG+TQA+ + TLGT  DEQ +
Sbjct: 303 RSSILERGIRTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIM 362

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L G +R +FM+HYNF P + GEV R+    RREIGHG LA RA+  VLP    FPYTL
Sbjct: 363 DDLEGDKRENFMLHYNFPPFSVGEVGRL-YTGRREIGHGHLAHRALEAVLPSKDDFPYTL 421

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMATVCGS+L+L++AGVPI KPVAGIAMGLV DG+  +ILSDI G+E
Sbjct: 422 RVVSEILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSDILGEE 481

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT+ GITA QMD+KI  I    M  AL+QA+RGRLHIL  M++ +SE R
Sbjct: 482 DHFGDMDFKVAGTEDGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPR 541

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L ++ PR+   A+ P++I  +IG  GK IR I E     +NIDDDG++ I S      
Sbjct: 542 PELSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISESFDVTINIDDDGSIVIYSKQKENA 601

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E A+  I  + + PEV K+Y G+V +++DFGAF+ F   R+GL HISQ+S +R+    DV
Sbjct: 602 EQAKAYIDKMLEEPEVGKVYTGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHDV 661

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           VK    V V++L+ D  G++ L+M ++D++  K 
Sbjct: 662 VKLNQEVPVRILEIDRLGRVNLTM-LIDESKAKE 694


>gi|312862624|ref|ZP_07722865.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis F0396]
 gi|311101884|gb|EFQ60086.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis F0396]
          Length = 745

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/700 (40%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E+ +AGRPL +E G +A+Q++GAV+  YG+T VL+  V  + +    DFFPL VNY
Sbjct: 3   KQTFEMTFAGRPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATA-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   +     LDL V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQLDLTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++  +  ++L+
Sbjct: 182 EAINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDAELK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+     + L  +  + EK  R      +K+++++ +    +   + E     +V + E
Sbjct: 242 VEIETAYYDQLAKAVQVEEKLAREAATQTVKEEVLASYQERFAEDEDKETILRDVVEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L    +  F+ HYNF   + G+  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSDTQLIDGLDPEYKKRFLHHYNFPQYSVGDTGRYGAPGRREIGHGALGERALAQVLPSV 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRRGITALQMDIKISGITPAILEEALAQAKVARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I 
Sbjct: 542 AVIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+ +I  +    +V ++Y   VV++  FGAFVH     D LVHIS+L+ ER
Sbjct: 602 SSDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWER 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             +  DVVK GD V VK++  D++G+I  S+K +     K
Sbjct: 662 TERVEDVVKVGDMVTVKIIKIDEKGRIDASIKTLLPKPEK 701


>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB8]
 gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
          Length = 713

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/696 (43%), Positives = 443/696 (63%), Gaps = 11/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E+  AGRPL LETG+ A+Q+ G+VL  Y +TVVLAT     +  +  DF PLTV ++
Sbjct: 11  HRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVEA-DFLPLTVEFE 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +RM DR IRPLF K +++E Q+I+ V+  D ++
Sbjct: 70  ERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVTVLSADQKN 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++  +AASAALMLS +P+EGP+   +V  I G +VLNP L E ++  LDL V+G+++
Sbjct: 130 PPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQLDLVVAGSKE 189

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--FSKLE 241
           A+LMVE EA ++ E+ ++ A+ F H E +P++E    +A+  AK  +     +    + +
Sbjct: 190 AILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWTPPESLPEEEK 249

Query: 242 EEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVF 295
           E + ++  E  L        K  R + + +  +++++    +       E       S F
Sbjct: 250 EALYRLALERGLSQVLQTASKGERSRALAEFAERLIAEALPKGEDGTPDEGKKPLYESAF 309

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +++  + +R ++L++  R DGR  + +R I  +V +L R HGS++F RG+TQ +  VTLG
Sbjct: 310 DEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLG 369

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  DEQ +D L   +   F++HYNF P +TGEV R+   SRRE+GHG LA+RA+  V+P+
Sbjct: 370 TGRDEQILDDLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPK 429

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVPI  PVAG+AMGLV + +  +I
Sbjct: 430 EEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVI 489

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKVAGT  G+TA+QMD K+GG+   ++  AL QA+  RL IL+ M
Sbjct: 490 LTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREARLKILDLM 549

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             VL   R +L  F PR+  + +P ++I  VIG GGK +R + E+ G +V+I++DGTV+I
Sbjct: 550 EAVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRAL-EELGVEVDIEEDGTVRI 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            SS L     A++ I  +T   +V +IY+G V ++  FGAF+      +GL+HISQ++  
Sbjct: 609 YSSDLQAALEAKKRIEDLTREAKVGEIYEGTVTRITPFGAFISLFPGTEGLLHISQIAPG 668

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RVA+  D +K GD + VK+   D+RGKI L    ++
Sbjct: 669 RVARVEDHLKVGDVIKVKVHRIDERGKIDLIRPELE 704


>gi|304440007|ref|ZP_07399900.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371499|gb|EFM25112.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 697

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/695 (42%), Positives = 446/695 (64%), Gaps = 3/695 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
                E AGR +++  G++A Q++GA L  YG+TVVL T    +  ++G DFFPL+V+Y+
Sbjct: 3   KVFSREIAGREMRVTIGKVAEQANGAALVEYGDTVVLVTATASKKPREGIDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+++RE RP+E  IL +R+IDR +RPLF + Y+N+ QV+   +  D ++
Sbjct: 63  EKMYAVGKIPGGFIKREGRPSEKAILTARLIDRPLRPLFPEGYRNDVQVVATALAVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
            P +V+MV +S AL +S +PF+GP     V  ++G+YV+NP  ++  +  ++L ++GT+ 
Sbjct: 123 QPDIVAMVGSSIALTISDIPFDGPTGSVFVGMVDGEYVINPTEEQRAKSKIELNLAGTKS 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
           A++MVE  A  +SE+ +L AI+ GH E K + E I ++ +   KE    +  K   +++E
Sbjct: 183 AIMMVEAGAKIVSEEEMLGAILKGHEEIKKICEFIEEIQREVGKEKAQYEVFKPDEEIKE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++    KE L  +    +K +R ++ ++ K K+  +F+ E   +   +I +  E I+ + 
Sbjct: 243 KVIAFGKELLVEAINQDDKIIREEKTEEAKDKIYEHFNEELEEFG-KDIDAAIESIEVEE 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++++  R DGR  + +R +S++VGL +RTHGS LF RG TQ + + TL    + Q 
Sbjct: 302 VRRGIIEEDRRPDGRALDEIRPLSSEVGLFRRTHGSGLFKRGQTQVLSITTLAGLSEVQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L       ++ HYNF P + G+   M  P RREIGHG LA RA+ PVLP   +FPY 
Sbjct: 362 IDGLGDDTPKRYIHHYNFPPYSVGDTKPMRGPGRREIGHGALAERALIPVLPTEEEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GSSS A+VCGS+L+LMDAGVPI +PVAGIAMGL+++     IL+DI G 
Sbjct: 422 IRVVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKQPVAGIAMGLIEEHGVIKILTDIQGL 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA+QMD+K+ GI + I+  AL++A+  RL IL+ +   + E 
Sbjct: 482 EDHFGDMDFKVAGTREGITAIQMDIKVEGIKKEILEEALEKARIARLQILDNIEATIDEP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  F P + I+ I P++I  VIG GGKVI  I+EQTG K++IDDDG V + S+   +
Sbjct: 542 REKLSPFAPIIYIILIDPEKIGEVIGSGGKVINKIIEQTGVKIDIDDDGKVSVISNDHEK 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A ++I  I    E+  IY G+V K+M FGAFV      +GL+HIS++  +R  K  D
Sbjct: 602 AQEAIDIIEGIVKEVEIGDIYNGKVKKLMKFGAFVEIKKGTEGLLHISEIDHKRTEKVED 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +K GD+V VK++D D++GKI LS K +     K 
Sbjct: 662 ELKVGDSVVVKVIDVDEQGKISLSRKALIPKPEKD 696


>gi|77407938|ref|ZP_00784689.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
 gi|77173485|gb|EAO76603.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
          Length = 709

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/700 (40%), Positives = 439/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DFFPL VNY
Sbjct: 3   KQVFEMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+  D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y++G +++NP   E + S L+L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSE+++L+A++ GH     +I    ++     KE   ++  +   +L+
Sbjct: 182 EAINMVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+       L+ +  + EK  R    + +K+ ++  + + ++   E      ++  + E
Sbjct: 242 AEIIATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A +  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L+   +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 362 MGEAQIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLH 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++ESR QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 542 GAIAESRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I+  +++I S+    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 602 SSDQAAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  +DV++ G+ V VK++  DD+G++  SMK +     K
Sbjct: 662 TANVADVLEIGEEVDVKVIKIDDKGRVDASMKALLPRPPK 701


>gi|170759417|ref|YP_001787723.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226702640|sp|B1KWK1|PNP_CLOBM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169406406|gb|ACA54817.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 702

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/691 (40%), Positives = 434/691 (62%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           + V+MVE    ++ E+ +  AI+FG  ECK ++    +      K        K   ++E
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGKTKNEPVLYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    Q +
Sbjct: 242 KEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KVADIAEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 IVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++FPY
Sbjct: 361 ILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 711

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/688 (42%), Positives = 435/688 (63%), Gaps = 5/688 (0%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
            +  ETG  A+Q++G++    G TVVL T    ++  + Q FFPLTVNY E+ YA GKIP
Sbjct: 18  EMIFETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIP 77

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE++PT+NE L SR+IDR +RP+F   ++NETQVI +V+ +D  +SP +++M  A
Sbjct: 78  GGFFKREAKPTDNETLTSRLIDRPLRPMFPDGFRNETQVIAHVVSYDGVNSPDMLAMNGA 137

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           SAALM+S +PF GP+ G +V  ++G+ ++NP  D  ++  +++ ++GT DA++MVE   +
Sbjct: 138 SAALMISDIPFNGPIAGVRVGRLDGKLIINPPADRLEELDMNIILAGTDDAIVMVEAGMS 197

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDL 252
            +SE  V++A+ FGH+  K ++   +++     KE     S   + +L +E    + + L
Sbjct: 198 VVSEAEVIEALQFGHDNIKKLVAKQNEMVAALGKEKFEYTSFCVADELVDEAMAELSDKL 257

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           + +  IP K  + + +D + ++ +     +     ++     +++ +++ K  R   +D 
Sbjct: 258 KEALVIPAKLEKYEALDKIGEEYLEAMKEKLGEDDFDAELYKNIYHEVEKKAFRDFTIDT 317

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K R+DGR    +RDI  +  LL   HGS LF RG+TQA+VV TLGT+ D Q +D++ G  
Sbjct: 318 KTRIDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDG 377

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           +  FM+HYNF P   GEV  +  P RREIGHG LA R++  VLP    FPYT+RIVSE+ 
Sbjct: 378 KKRFMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDFPYTIRIVSEVL 437

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDHLGHM 489
           ES+GSSSMATVCG  LALMDAGVPI  PVAG+AMGL+ +G D F +LSDI G EDHLG M
Sbjct: 438 ESNGSSSMATVCGGCLALMDAGVPIKSPVAGVAMGLIYEGADRFAVLSDILGTEDHLGDM 497

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKV GT  GITA+QMD+KI G+S+ ++  AL QAK  R++IL +M+  +     +L   
Sbjct: 498 DFKVTGTKDGITALQMDIKIEGLSQELLETALGQAKEARMYILGKMTDHMPVPNEELAPT 557

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            PR   M I P++I  VIG GGK+I+ I+E++GA ++IDD GT+ I ++  A IE A   
Sbjct: 558 APRYVTMKINPEKIGMVIGPGGKMIKSIIEESGAAIDIDDTGTINIFAADKASIEIAVRR 617

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I    E   +Y   V K+M++GAFV     ++ L+H+SQ S ER+   +D +  GD 
Sbjct: 618 VNEIVAEVEDGAVYDATVKKMMEYGAFVELIPGQEALLHVSQYSHERINSIADYLNVGDK 677

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V VK++  D  G+ KLS KV+ +   K 
Sbjct: 678 VQVKVVGKDPNGRFKLSRKVLLERPKKE 705


>gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium
           autotrophicum HRM2]
 gi|257096686|sp|C0QHM6|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2]
          Length = 695

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/693 (44%), Positives = 451/693 (65%), Gaps = 4/693 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              + E  G+   L  G+IA+Q+ G+V+  YGET+VL T V  +  +D   F PLTV YQ
Sbjct: 3   QVFKTELNGKEFSLRAGKIAKQASGSVIVQYGETIVLVTAVAAKEARDSVSFLPLTVEYQ 62

Query: 65  ERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           E+ YA G+IPG Y RRE  RP+E E L +R+IDR IRPLF K + +E QVI  V+  D E
Sbjct: 63  EKIYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFEKGWASEIQVIATVISTDKE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P V+++V ASAAL +S +PF GP+ G +V  I+G+++ NP + E +   ++L V+G++
Sbjct: 123 NDPDVLALVGASAALQMSDIPFAGPIAGLRVGRIDGKFIANPTVQEMENSDIELVVAGSK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
             V+MVE  A+ +SE  +L+AI FGH   +P+I+    L K   KE           +L 
Sbjct: 183 TGVVMVEGGADVVSEADMLEAIFFGHQAMQPLIQLQEDLKKALGKEKRAYTPPLVDEELM 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++ ++ ++ +  +     K+ R K +DD++ +++       +     EI S+F D+  K
Sbjct: 243 AKVVELAQDKIHTAVQTQGKFERVKALDDVRTEVIETLGEAFAD-RINEIKSMFGDLVKK 301

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V R ++L +  R+DGR  + VR+I+ +VG+L R HGS+LF RG+TQ + V+TLG+  DEQ
Sbjct: 302 VSRKIVLTENQRIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQ 361

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +++L+G +  +FM+HYNF P + GE  R G PSRR++GHG LA RA+  VLP  A F Y
Sbjct: 362 RIETLNGNETRNFMLHYNFPPFSVGECRRAGGPSRRDVGHGNLAHRALARVLPDQADFEY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+V E+ ES+GSSSM TVC  +LALMD GVPI+ PV+GIAMGLV D D+ ++L+DI G
Sbjct: 422 TIRLVGEVMESNGSSSMGTVCAGTLALMDGGVPIAAPVSGIAMGLVSDADNTVVLTDILG 481

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDH G MDFKVAGT+ GITA+QMD+KI  + + ++V AL QA+ GRLHIL  M   L  
Sbjct: 482 DEDHFGDMDFKVAGTEQGITALQMDIKIRELPKAVLVKALDQARIGRLHILKRMLATLEI 541

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++  + P++  + I PD+IR +IG GGK+IR I   T   + +DD G +KIA+ +  
Sbjct: 542 HRDKMSPYAPKIITVKINPDKIREIIGPGGKMIRSIQADTNTNIEVDDSGLIKIAAENQE 601

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + EAA +++  I   PE+  IY+G+VVK  DFGAFV      DGLVHIS+L+  RV K +
Sbjct: 602 DGEAAAKIVSDIGMDPEIGGIYEGEVVKTTDFGAFVRIKTGTDGLVHISELANHRVKKVT 661

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           DVVKEG+ + VK+L+    GKI+LS K +++  
Sbjct: 662 DVVKEGEVIRVKVLEITRDGKIRLSCKALEEEE 694


>gi|148380367|ref|YP_001254908.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933900|ref|YP_001384587.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934955|ref|YP_001388103.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
           str. Hall]
 gi|187610255|sp|A7FVY7|PNP_CLOB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610257|sp|A5I4I7|PNP_CLOBH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148289851|emb|CAL83959.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929944|gb|ABS35444.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930869|gb|ABS36368.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. Hall]
          Length = 702

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/691 (40%), Positives = 434/691 (62%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           + V+MVE    ++ E+ +  AI+FG  ECK ++    +      K        K   ++E
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIVAFQEEAVAKFGKTKNEPVLYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    Q +
Sbjct: 242 KEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KVADIAEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 IVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++FPY
Sbjct: 361 ILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQSEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|313889611|ref|ZP_07823255.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122038|gb|EFR45133.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 742

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/700 (40%), Positives = 437/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 14  KQTFTRTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 72

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 73  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDEN 132

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  +V+M  +S AL +S +PF GP+ G QV YI+GQ+V+NP   + + SL +L V+G++
Sbjct: 133 ASAPMVAMFGSSLALSISDIPFNGPIAGVQVGYIDGQFVINPDKAQMEASLLELTVAGSK 192

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  + L+
Sbjct: 193 EAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEEIVAAVGKEKAEVELLQVDTDLQ 252

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+       L+ +  + EK  R    +++K+ + + +    +  +       ++  + E
Sbjct: 253 AEIVTKYNSQLQTAVQVEEKKAREAATEEVKEIVKAEYMERFAEDDNLATIMRDVAEILE 312

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + AQV  L + HGS LF RG TQA+ V+TL  
Sbjct: 313 QMEHAEVRRLITEDKIRPDGRQIDEIRPLDAQVDFLPKVHGSGLFTRGQTQALSVLTLAP 372

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 373 MGETQIIDGLDEEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSL 432

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 433 EDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGKNYTVL 492

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 493 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIE 552

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++  R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V+I 
Sbjct: 553 ATIATPRPELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGMVQIF 612

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y+ +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 613 SSDQAAINRTKEIIAGLVREAKVGEVYRAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 672

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  SDV++ G+ V VK++  D++G++  SMK +     K
Sbjct: 673 TANVSDVLEIGEEVDVKVIKVDEKGRVDASMKALIPRPPK 712


>gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 796

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/705 (50%), Positives = 487/705 (69%), Gaps = 9/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ+ GAV+ +Y  T VLATVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRRSAEWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQ-GSLDLF 177
           D  + P V ++V A+AAL +SG+PF G VVGA+V Y+   G+Y+LN   DE    SLDLF
Sbjct: 120 DTVTPPEVTALVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +SG +D+VLMVE EA++LSE  +L AI FGH  C+ VI  I + +    + PI     D 
Sbjct: 180 LSGNEDSVLMVESEASELSESQMLGAITFGHQHCQEVINLIKEFSHESGQTPIDFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVS 293
           S L  ++    KED  ++     K  R  ++++L+ K++S  + ++S+ +    + +IV+
Sbjct: 240 SSLVSDIESSYKEDFSLAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDIVT 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +  +  +VR+ ++D   R+DGR  + +RDI  +V +L + HGS+LF RG+TQA+VV  
Sbjct: 300 ALKTFERSLVRSKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTA 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI  VL
Sbjct: 360 LGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVL 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+ D F
Sbjct: 420 PEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRF 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           IILSDI GDEDHLG MDFKVAGT  G+TA+QMDMKI GI  +I+  AL QAK GR+HIL+
Sbjct: 480 IILSDILGDEDHLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHILS 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+ V+ ESR ++    PR+E + I  D+IRNVIG GGK IR I E+TGAK+ I  DGTV
Sbjct: 540 KMNAVIQESRNRIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   +E A+ MI  I   PE+ K+++G VV++M FGAFV F G + GLVHIS++ 
Sbjct: 600 MIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIR 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            E ++    V+   D V V ++  D R  I+LSM+ VDQ +G+PI
Sbjct: 660 NEHISSVGSVISLNDKVKVLVIGID-REHIQLSMRRVDQESGEPI 703


>gi|219854675|ref|YP_002471797.1| hypothetical protein CKR_1332 [Clostridium kluyveri NBRC 12016]
 gi|219568399|dbj|BAH06383.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 715

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 449/700 (64%), Gaps = 7/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V  ++   AGR LK++  ++   S+  +L +YG+TVVL         ++G DFFPL+
Sbjct: 8   MNEV--IQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLS 65

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           + Y+ER Y+VGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  
Sbjct: 66  IEYEERLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSV 125

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P++V+M  AS AL +S +PF  PV    V  ++G +++NP L++ ++ +L+L V 
Sbjct: 126 DQDNLPNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVC 185

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
            T++ V+MVE  A ++ ED++ DAIIFG  ECK +     ++ K   K+    D  K   
Sbjct: 186 ATKERVMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKKDEPDLYKVNE 245

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LEEE+     + ++ + +I ++  R K + D+ +K+   FS +++  N+ +I  V   +
Sbjct: 246 DLEEEVRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQFSEDYAD-NKSDIADVVYRV 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR ++L +  R+DGR+ + VR IS +VG L R HG+ LF RG TQ + VVTLG+  
Sbjct: 305 KKEIVRGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLG 364

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +       +M HYNF   +TGEV  +  P RREIGHG LA +A+ P++P   Q
Sbjct: 365 DVQILDGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQ 424

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGLV   D     IL
Sbjct: 425 FPYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEIL 484

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKV GT+ GITA+Q D KI G+S   +   L++A+  RL+IL +M 
Sbjct: 485 TDIQGLEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMK 544

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R ++ ++ P+  IM+IPPD+IR+VIG GGKVI  I+ +TG K++I +DG + + 
Sbjct: 545 QCIPEHRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVM 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S      + A ++I  +T    V +IY G+V K+ +FGAFV     ++GLVHIS+L   R
Sbjct: 605 SEDSEGAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTR 664

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V K  D+V  GD + VK+++ D++G+I LS K   +++ K
Sbjct: 665 VNKVEDIVSVGDEILVKVIEIDNQGRINLSRKDAIKDSEK 704


>gi|225028434|ref|ZP_03717626.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
 gi|224954232|gb|EEG35441.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
          Length = 696

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/694 (42%), Positives = 430/694 (61%), Gaps = 8/694 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V    +E AGR L +E G++A Q++GA L  YG+TVVL+T       ++G DFFPL+V +
Sbjct: 2   VKQFSMELAGRTLTVEIGKVAAQANGAALMRYGDTVVLSTATASEKPREGIDFFPLSVEF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 62  EEKMYAVGKIPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMAVDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQ 182
            SP V +M+ AS A  +S +PF+GP+ G ++  I+G++++NP  D +    L L V+ T 
Sbjct: 122 CSPEVTAMLGASVATSISDIPFDGPIAGTRIGLIDGEFIVNPTADQQLVSDLALTVASTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           + V+M+E  AN++ ED +++AI   H   K VI+ I ++ + C KE    +  D  + L 
Sbjct: 182 EKVIMIEAGANEVPEDKMIEAIFKAHEVNKEVIKFIDRIVEECGKEKHEYEHVDTPEDLW 241

Query: 242 EEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            +M   I  E +  + F   K VR + I  +K+K+   ++ EH  W    I       Q 
Sbjct: 242 NDMVDFITPEAMEEAVFTDVKQVREENIRQIKEKLEERYAEEHEDWLP-LIDDAVYKFQK 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + 
Sbjct: 301 KTVRKMILKDHKRPDGRAINEIRPLAAEIDLLPRVHGSGMFTRGQTQIMTITTLAPLSEA 360

Query: 361 QYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 361 QKIDGLDANVTSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEDEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILS 477
           PY +R VSE  ES+GS+S A++C S+L+LM AGVPI KPVAGI+ GLV     DD+I+L+
Sbjct: 421 PYAIRTVSETLESNGSTSQASICASTLSLMAAGVPIKKPVAGISTGLVTGDSDDDYIVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++ +I+  A+ + K  R HIL + M 
Sbjct: 481 DIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTPDIIREAISRTKEAREHILTDVME 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+S  R  +GE+ P++  M + PD+I  +IG  GK I  I+++TG K++I+D+G V I 
Sbjct: 541 PVISTPRDHVGEYAPKIMQMHVDPDKISEIIGKQGKTINAIIDETGVKIDINDEGRVDIC 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                 I+ A E+IR I +  E  KIY+G+VV++M+FGAFV     +DGL+HIS+LS ER
Sbjct: 601 GVDQVMIDRAMEIIRLIVEPVEAGKIYEGEVVRIMNFGAFVQLAPNKDGLIHISKLSKER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V K  DVV  GD V VK+L+ D  G+I L+++ +
Sbjct: 661 VEKVEDVVNIGDKVKVKVLEIDKMGRINLALREI 694


>gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
 gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
          Length = 696

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/690 (40%), Positives = 424/690 (61%), Gaps = 8/690 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D    +    GR L++E G++  +++G  +  YG+TVV  T       +   DFFPL+V+
Sbjct: 5   DYRVFKTAIGGRLLEVEIGKVCEKANGQAMVKYGDTVVNVTATASEKPRADIDFFPLSVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++ER YA GKIPGG++RRE RP+E  IL SR+IDR IRPLF K + N+ QV+   M  D 
Sbjct: 65  FEERMYAAGKIPGGFIRREGRPSEKAILTSRLIDRPIRPLFPKGFYNDVQVVCTAMSIDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + +P  V+M+ +S AL +S +P++GP     + YI+G YV+NP  ++     L L VSGT
Sbjct: 125 DCTPESVAMIGSSIALTISDIPWDGPTASVVIGYIDGNYVVNPTQEQRAVSELHLVVSGT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +DA++MVE  AN++ E V+L+AI+F H + K ++  I  + +   K+    D  +  +++
Sbjct: 185 KDAIMMVEAGANEVKESVMLEAILFAHEQIKQIVSFIEDIQREVGKDKRDYDLYEVPAEI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + ++    + +  +  +  +  R   +  ++   +   S +     E +I +    ++ 
Sbjct: 245 VDAVNDFAAQKMYDAVHVSGREERTAAMAQVETDTMEALSEKFEGV-EKDIANALYALKK 303

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + VR +++D ++R D R    VR I     +L R HGS LF RG+TQ +   TLG   D 
Sbjct: 304 EKVRNLIIDDEIRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAATLGGIGDA 363

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D +       +M HYNF P + GE   + +P RREIGHG LA RA+ PVLP    FP
Sbjct: 364 QVIDGIGVETEKRYMHHYNFPPYSVGEARPIRSPGRREIGHGALAERALLPVLPSKEDFP 423

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-----DGDDFII 475
           YT+R+VS++  S+GS+S A+VCGS +ALMDAGVPI  PVAGIAMGL++           I
Sbjct: 424 YTIRVVSDVLSSNGSTSQASVCGSCMALMDAGVPIKAPVAGIAMGLIERVEEDGNSKMAI 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G ED LG MDFKVAGT  GITA+QMD+K+ G+S+ ++  AL+QA+ GRLHI+ EM
Sbjct: 484 LSDIQGLEDFLGDMDFKVAGTKEGITAIQMDIKVHGLSKEVLSQALEQAREGRLHIMGEM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +   R +L ++ PR+  M I P+Q+R VIG GGK I  I ++TGAK++++DDGTV I
Sbjct: 544 LDEIDAPRAELSKYAPRIITMKIDPEQVRVVIGPGGKTINKITQETGAKLDLEDDGTVFI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +  +    A ++ +  +T   EV ++Y+G+V ++M FGAF+     ++GL+HIS+++  
Sbjct: 604 TAPDMESAHACQQAVELLTKDVEVGEVYEGEVKRIMAFGAFIEVLPGKEGLLHISKMADY 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RV K  DV+  GD V VK+ + DD+G+I L
Sbjct: 664 RVDKVEDVMNLGDKVKVKVKEIDDQGRINL 693


>gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str.
           Jake]
 gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake]
          Length = 796

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/705 (47%), Positives = 484/705 (68%), Gaps = 9/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ++GAV+ +Y  T VLATVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRKSTEWGGKTLILESGKIARQANGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDED-QGSLDLF 177
           D  + P V +++ A+AAL +SG+ F G V G ++ Y+  +  Y+LN   D+    SLDLF
Sbjct: 120 DTVTPPEVTALIGATAALSISGVSFNGLVAGVRIGYLPSEDKYLLNASADDMLYSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +SG +D+VLMVE EA++LSE  +L A+ FGH  C+ VI  I + ++    +PI     D 
Sbjct: 180 LSGNEDSVLMVESEASELSESQMLRAVTFGHQNCQEVINLIREFSEEKGVQPIEFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS----EHSSWNEGEIVS 293
           + +   +    K+D  ++     K  R  ++++L+ K++S F+     ++   +  +++S
Sbjct: 240 NPIVNYIESSYKQDFSLAYSNTVKKERVLKLEELRDKVLSDFAEKCSVDNVECDNQDVIS 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +  +  +VR+ +++   R+DGR  + +R+I  +V +L + HGS+LF RG+TQA+VV  
Sbjct: 300 ALKSFERSLVRSQIVETSSRIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTA 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI  VL
Sbjct: 360 LGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVL 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+GD F
Sbjct: 420 PEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEGDKF 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           IILSDI GDED+LG MDFKVAGT  G+TA+QMDMKI GIS +++  AL QAK GR+HIL+
Sbjct: 480 IILSDILGDEDYLGDMDFKVAGTAEGVTALQMDMKISGISVDVIEKALLQAKDGRMHILS 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M+ V+ ESR  +    PR+E + I  D+IRNVIG GGK IR I E+TGAK+ I  DGTV
Sbjct: 540 KMNAVIQESRNSIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   +E A+ MI  I   PE+ K+++G VV+++ FGAFV+F G + GL+HIS++ 
Sbjct: 600 MIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIVKFGAFVNFLGGKRGLIHISEIK 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            E ++    V+   D V V ++  D R  ++LSM+ VDQ TG+PI
Sbjct: 660 NEHISAVGSVISVNDKVKVLVIGID-REHVQLSMRRVDQETGEPI 703


>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii L2-6]
          Length = 714

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/690 (41%), Positives = 424/690 (61%), Gaps = 7/690 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E   AGRP K+E G++   S+ + L  YGET V+  VV     ++G DFFPL V 
Sbjct: 14  NFKVYETTLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLNVE 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  D 
Sbjct: 74  YEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + SP +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++  +  L L V+ T
Sbjct: 134 DCSPEIAGMIGASLVTAVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRRKSDLALTVAAT 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            D ++M+E  AN++ ED VL+AI   H E K +I  I+ +     K  I          +
Sbjct: 194 MDKIVMIEAGANEVDEDTVLNAIKAAHVEIKKIITFINGIVAERGKPKIDFQVVGLDMDV 253

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              + +   +D + +    +K VR   +  +  K+    + E+    E ++  V   +Q 
Sbjct: 254 FHAIKEKYLDDFKAAMDTDDKNVRDAALLPIMDKI----AEEYPDLTEADLDLVSYKMQK 309

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG TQ +   TLG  +D 
Sbjct: 310 YVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDN 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG LA RA+ PVLP   +FP
Sbjct: 370 QLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALLPVLPSLEEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +GD ++ + DI 
Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGDRWMTMLDIQ 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVL 539
           G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ ++GRL+IL+E +  V+
Sbjct: 490 GVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKPVI 549

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M IP D+I++VIG GGKVI+ I      K+++ +DG V +++  
Sbjct: 550 AEPRRELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQEDGHVFVSAVD 609

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   IR+I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS+L T+RV +
Sbjct: 610 QEDAKRAIFTIRTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHISKLDTKRVER 669

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             DVV  GD + VK+ D D +G+I LS + 
Sbjct: 670 VEDVVAVGDAIVVKVTDIDQQGRINLSRRD 699


>gi|322806678|emb|CBZ04247.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           H04402 065]
          Length = 702

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/691 (40%), Positives = 433/691 (62%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           + V+MVE    ++ E+ +  AI+FG  ECK +     +      K        K   ++E
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFEECKNIAAFQEEAVAKFGKTKNEPVLYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+     + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    Q +
Sbjct: 242 KEVKSFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSEKYED-KGADIAEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 IVRNMLLNEDRRPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++FPY
Sbjct: 361 ILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|187778995|ref|ZP_02995468.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
           15579]
 gi|187772620|gb|EDU36422.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
           15579]
          Length = 702

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/691 (40%), Positives = 435/691 (62%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           + V+MVE    ++ E+ + +AI+FG  ECK ++    +      K        K   ++E
Sbjct: 182 ERVMMVEAGGQEIDEETMYNAIMFGFEECKNIVAFQEEAMAKFGKTKDEPALYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+     + ++ + +I +K  R   +D +K+K+   FS ++      +I  V    Q +
Sbjct: 242 KEVKSFAFDMIKEAMYIMDKDERNAALDKVKEKISEEFSEKYED-KGADIKEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 IVRNMLLNEDRRPDGRAFDEVRSISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  ++FPY
Sbjct: 361 ILDGIAEQESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSESEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLEKEKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAIGIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 706

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/697 (43%), Positives = 447/697 (64%), Gaps = 7/697 (1%)

Query: 3   DVHTVEIEWAG--RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           ++ + EI       P+ LETG  A+Q++G++ A +GETVVL T V  + + +  DFFPLT
Sbjct: 4   NIKSYEIRLGSNAEPIILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+ Y+VGKIPGG+L+RES+P++ E LI+R+IDR +RP+F   ++NE Q++  V+  
Sbjct: 64  VNYIEKFYSVGKIPGGFLKRESKPSDKETLIARLIDRPLRPIFPDGFRNEVQIVATVVSS 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++SP V+S+ AASAALM+S +PF GPV   +V  +NG+Y++NP  +  DQ  +++ ++
Sbjct: 124 DQKNSPDVLSINAASAALMISDIPFNGPVGAVRVGKLNGEYIINPDAELFDQLVMNIVLA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT+DA++MVE     +SE+ V++A   GH   + +I    K+ +          D    +
Sbjct: 184 GTEDAIVMVEAGLKNVSEEEVVEAFEKGHQAIREIIAVQKKMREELGLPKAEYKDFSVPA 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN---EGEIVSVF 295
            + E++    K+ L  +     K  +   I+ +K +      +E        E      +
Sbjct: 244 DILEKVYAECKQSLFDAVMTKGKKEKYDAIERVKDEYFEKLKTELGEAFDQVESLYSEAY 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +++ K+ R + L+ K+R+DGR  + +R I  +VGLL R HGS+LF RG+TQA+V  TLG
Sbjct: 304 HEVEKKIFREITLENKIRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T+ D Q VD + G     FM+HYNF P + GEV RMGAP RRE+GHG LA RA+  V+P 
Sbjct: 364 TKMDSQLVDDIEGNSSKRFMLHYNFPPFSVGEVGRMGAPGRREVGHGALAERALSFVIPD 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
            + FPYT+R+VSEI ES+GSSSMATVCG  L+LMDAGVP+   VAGIAMGL+ +   + I
Sbjct: 424 ESDFPYTIRVVSEILESNGSSSMATVCGGCLSLMDAGVPVKDMVAGIAMGLIYEKGRYAI 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI G EDHLG MDFKVAGT  GITA+QMD+KI G+S +++  AL  A+ GRLHIL++M
Sbjct: 484 LSDIMGIEDHLGDMDFKVAGTKDGITALQMDIKIEGLSMDLVREALAAARVGRLHILSKM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +VL+  R  L  + PR   + + P+++  +IG  GK I+ I+E+TG  ++I D G V I
Sbjct: 544 QEVLASPRPDLSPYAPRFVTINVDPEKVGLIIGPAGKNIKAIIEETGVSIDILDGGVVNI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +SS   I++A  MI +I     ++K+YKG+V K+MD+GAFV      + L+H+SQ S E
Sbjct: 604 FASSKDSIDSAISMIEAILGELTIDKVYKGKVKKLMDYGAFVEIAPGIEALLHVSQYSFE 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +V   S  +K GD V VK L  D+RG+ K+S K   +
Sbjct: 664 KVDDLSKYLKIGDVVEVKYLGKDERGRHKISRKATLE 700


>gi|153954062|ref|YP_001394827.1| polynucleotide phosphorylase/polyadenylase [Clostridium kluyveri
           DSM 555]
 gi|189037304|sp|A5N848|PNP_CLOK5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096734|sp|B9E1K8|PNP_CLOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146346943|gb|EDK33479.1| Pnp [Clostridium kluyveri DSM 555]
          Length = 708

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/700 (41%), Positives = 449/700 (64%), Gaps = 7/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V  ++   AGR LK++  ++   S+  +L +YG+TVVL         ++G DFFPL+
Sbjct: 1   MNEV--IQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           + Y+ER Y+VGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  
Sbjct: 59  IEYEERLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P++V+M  AS AL +S +PF  PV    V  ++G +++NP L++ ++ +L+L V 
Sbjct: 119 DQDNLPNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVC 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
            T++ V+MVE  A ++ ED++ DAIIFG  ECK +     ++ K   K+    D  K   
Sbjct: 179 ATKERVMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKKDEPDLYKVNE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LEEE+     + ++ + +I ++  R K + D+ +K+   FS +++  N+ +I  V   +
Sbjct: 239 DLEEEVRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQFSEDYAD-NKSDIADVVYRV 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR ++L +  R+DGR+ + VR IS +VG L R HG+ LF RG TQ + VVTLG+  
Sbjct: 298 KKEIVRGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +       +M HYNF   +TGEV  +  P RREIGHG LA +A+ P++P   Q
Sbjct: 358 DVQILDGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQ 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGLV   D     IL
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEIL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKV GT+ GITA+Q D KI G+S   +   L++A+  RL+IL +M 
Sbjct: 478 TDIQGLEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMK 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R ++ ++ P+  IM+IPPD+IR+VIG GGKVI  I+ +TG K++I +DG + + 
Sbjct: 538 QCIPEHRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVM 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S      + A ++I  +T    V +IY G+V K+ +FGAFV     ++GLVHIS+L   R
Sbjct: 598 SEDSEGAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTR 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V K  D+V  GD + VK+++ D++G+I LS K   +++ K
Sbjct: 658 VNKVEDIVSVGDEILVKVIEIDNQGRINLSRKDAIKDSEK 697


>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
          Length = 713

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/690 (40%), Positives = 424/690 (61%), Gaps = 7/690 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E   AGRP K+E G++   S+ + L  YGET V+  VV     ++G DFFPL V 
Sbjct: 14  NFKVYETMLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLNVE 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  D 
Sbjct: 74  YEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++ +   L L V+ T
Sbjct: 134 DCSPEIAGMIGASLVTAVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVAAT 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            D ++M+E  AN++ ED +L AI   H E K +IE I+K+     K  I          +
Sbjct: 194 MDKIVMIEAGANEVDEDTMLTAIKTAHVEIKKIIEFINKIVAERGKPKIDFQVVGLDMDV 253

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              +     +D + +    +K VR   +  +  K+    + E+   +  ++  V   +Q 
Sbjct: 254 FHAIQNKYLDDFKAAMDTDDKNVRDAALLPIMDKI----AEEYPDLSAADLDLVSYKMQK 309

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG TQ +   TLG  +D 
Sbjct: 310 FVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDN 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG LA RA+ PVLP   +FP
Sbjct: 370 QLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVPVLPSLEEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +G+ ++ + DI 
Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGERWMTMLDIQ 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVL 539
           G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ ++GRL+IL+E +  V+
Sbjct: 490 GVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKPVI 549

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M IP D+I++VIG GGKVI+ I      K+++ +DG V +++  
Sbjct: 550 AEPRQELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQEDGHVFVSAVD 609

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I++I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS+L T+RV +
Sbjct: 610 QEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHISKLDTKRVER 669

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             DVV  GD + VK+ D D +G+I LS + 
Sbjct: 670 VEDVVAVGDAIVVKVTDIDQQGRINLSRRD 699


>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 716

 Score =  747 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/690 (40%), Positives = 423/690 (61%), Gaps = 7/690 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E   AGRP K+E G++   S+ + +  YGET VL  VV     ++G DFFPL V 
Sbjct: 14  NFKVYETMLAGRPFKVEMGKMCGLSNASAMIRYGETCVLCNVVMSPKPREGVDFFPLNVE 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  D 
Sbjct: 74  YEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++ +   L L V+ T
Sbjct: 134 DCSPEIAGMIGASLVTAVSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVAAT 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            D ++M+E  AN++ ED +L+AI   H E K  IE I+++     K  I          +
Sbjct: 194 MDKIVMIEAGANEVDEDTMLNAIKAAHVEIKKTIEFINRIVAERGKPKIDFQVVGLDMDV 253

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              +     +D + +    +K VR   +  +  K+    + E+      ++  V   +Q 
Sbjct: 254 FHAIQNKYLDDFKAAMDTDDKNVRDAALLPIMDKI----AEEYPDLTAADLDLVSYKMQK 309

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG TQ +   TLG  +D 
Sbjct: 310 FVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDN 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG LA RA+ PVLP   +FP
Sbjct: 370 QLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVPVLPSLEEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +GD ++ + DI 
Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGDRWMTMLDIQ 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVL 539
           G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ ++GRL+IL+E +  V+
Sbjct: 490 GVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKPVI 549

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +E R +L  + P++  M IP D+I++VIG GGKVI+ I      K+++ +DG V +++  
Sbjct: 550 AEPRHELSRYAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQEDGHVFVSAVD 609

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I++I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS+L T+RV +
Sbjct: 610 QEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHISKLDTKRVER 669

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             DVV  GD + VK+ D D +G+I LS + 
Sbjct: 670 VEDVVAVGDAIVVKVTDIDQQGRINLSRRD 699


>gi|218961755|ref|YP_001741530.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730412|emb|CAO81324.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 743

 Score =  747 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/703 (41%), Positives = 440/703 (62%), Gaps = 11/703 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F++   E ++ GR L +ETG++A+Q++G+V   YGET VL T    +   + QDFFPLTV
Sbjct: 4   FNITRRETDFCGRKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTV 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y E+ YA GKIPGG+ +RES+P+ +  L++R+IDRSIRPLF + ++N+  +++ V+  D
Sbjct: 64  DYIEKMYAAGKIPGGFFKRESKPSTDATLMARVIDRSIRPLFPEGFRNQVHIVVTVLSFD 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFVS 179
             + P  + +  AS AL +S +PF GP+    V YI+ Q+V+NP  +E   Q  L+L V+
Sbjct: 124 GVTDPSTMGVFGASLALSISDIPFNGPIASVTVGYIDNQFVVNPHFNEIETQSKLNLTVA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G++ +++M+E  A++LSE+++LDA+  GH E + +          C KE + +      +
Sbjct: 184 GSESSIVMIESAASELSEEMMLDAVFTGHKEIQKLCALQQDFISACGKEKVEVVLDSIPE 243

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS------SWNEGEIV 292
            +  ++       +  +  I  K  R    D  + +MV  FS +           E    
Sbjct: 244 EIMNKVENAFGAKIAEATVIFGKQERQDAFDAAEAEMVEMFSQQEDTDLSPWEETERYYK 303

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             F+++  + VR  +L K+ R+DGR ++ +R+I+ ++ +L R HGS+LF RG+TQ++  +
Sbjct: 304 MAFDELIRRYVRDSILRKQHRVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQSLGTL 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   DEQ +D L    +  F +HYNF P + GEV R+G   RRE+GHG LA RA+  V
Sbjct: 364 TLGGGTDEQVIDGLETEYKKSFYLHYNFPPYSVGEVGRIGPTGRRELGHGNLAERALKAV 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+RIV++  ES+GSSSMA++C   LALM  GVPI  PVAGIAMGL+ +G+D
Sbjct: 424 LPDKDSFPYTIRIVADTLESNGSSSMASICSGCLALMAGGVPIKAPVAGIAMGLIMEGED 483

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +++L+DI G EDHLG MDFK AGT  GITAMQMD+KI GI+  IM +AL +AK  R  IL
Sbjct: 484 YVVLTDIMGLEDHLGDMDFKCAGTREGITAMQMDIKISGITREIMQIALNKAKSARFKIL 543

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M++ ++E R +L  + PR+E   +P D+I  +IG GGK+I+ I+E+   +++I DDGT
Sbjct: 544 DIMAECIAEPRSELAPWAPRIESFKVPIDKIGEIIGPGGKMIKSIIEECQVQIDIQDDGT 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQ 651
           V+I S     I  A+ +I+ I   P    +++GQV ++  +G FV   G  ++G+VHIS+
Sbjct: 604 VRILSPDKESINKAKSIIKGIAVDPVAGDMFEGQVTRIEPYGIFVKILGGTKEGMVHISE 663

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           + T R+    D+VK GD V V+ L  D +GK+ LSMK V  N 
Sbjct: 664 MYTGRINHPLDMVKLGDKVQVRTLGMD-KGKLSLSMKGVAGNP 705


>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
           273]
 gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
           273]
          Length = 732

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/718 (46%), Positives = 466/718 (64%), Gaps = 27/718 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-LKDGQDFFPLTV 61
           + T EI    G+ + +ETGR+A+Q+DGA +   G+T+V+ATVV  R      QDFFPL V
Sbjct: 2   IITKEINLGQGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSVNQDFFPLQV 61

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+ YA GK PGG+ +RE+RP+E EIL +R+IDR++RPLF   Y +ETQVIINV+  D
Sbjct: 62  EYREKYYAAGKFPGGFFKREARPSEKEILSARLIDRALRPLFPTGYYHETQVIINVISSD 121

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++   V+  +AASAA+M+S +PFE  +   +V  +NG +++NP +DE +   +D+ + G
Sbjct: 122 QQNDADVLGGLAASAAIMVSDIPFENAMSEVRVGRVNGLFIINPTIDELEGSDIDISIGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSK 239
           T D + M+E E  ++SE  +LDAI FGH   K + +  ++LA   AK        +  ++
Sbjct: 182 TADTICMLEGEMKEISEAEMLDAIKFGHEAIKKLCQLQNELAGEVAKAKRPFTPLQVPAE 241

Query: 240 LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSSW-------- 286
           L E +    +  L+  +     K VR  +   +     KK + +FS+             
Sbjct: 242 LSEYVKNACESSLKELAYKPLAKEVRADETKAIYSETVKKAIEHFSAAFGPEALAADPSK 301

Query: 287 ----NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
               NE  I       +  V+R ++LD   R+DGR+ E VR I+ ++G++ R HGS+LF 
Sbjct: 302 ALCLNEHIIEEEIHSFEKNVMRRMILDDGKRLDGRNLEQVRPITIELGVIPRAHGSALFT 361

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V VTLGT++D Q VD+L+ +    FM+HYNF P + GEV R+G+  RREIGHG
Sbjct: 362 RGETQALVAVTLGTKKDAQSVDTLTNSADKRFMLHYNFPPFSVGEVGRLGSTGRREIGHG 421

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA R+I  V P   +FPYT+RIVSEI ES+GSSSMA+VCG +LALMD GVP+ KPV+GI
Sbjct: 422 NLAERSIKMVAPGEQEFPYTVRIVSEILESNGSSSMASVCGGTLALMDGGVPLKKPVSGI 481

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+KDG+++ +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  AL 
Sbjct: 482 AMGLIKDGEEYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILENALA 541

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+RGR HIL++M + +  SR +L ++ PR+  + +P + I  +IG GG+ IR I E+TG
Sbjct: 542 QARRGRFHILDKMEEAIPASREELAQYAPRLTAIQVPVESIGLIIGKGGETIRSITEETG 601

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCG 641
           A++NI+DDGTV IA SS    +AA E+I+++   PEV  IY G+V  V D  GAFV F  
Sbjct: 602 AEINIEDDGTVTIACSSNEGTKAAVEIIKALIAKPEVGTIYVGKVRDVRDELGAFVEFIP 661

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQNT 694
             DGLVHIS++S ERV K SD +K GD + VKL+D   D R    +  LSMK VD+  
Sbjct: 662 KTDGLVHISEISRERVTKVSDHLKVGDRIKVKLVDIRKDPRTGKTRFALSMKAVDEEP 719


>gi|332522644|ref|ZP_08398896.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313908|gb|EGJ26893.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 742

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/700 (40%), Positives = 437/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T    +AG+PL +E G++A+Q++GA +  YGE+ VL   V  + +  G DFFPL VNY
Sbjct: 14  KQTFTRTFAGKPLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATG-DFFPLQVNY 72

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 73  EEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDEN 132

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV YI+GQ+++NP   + + SL +L V+G++
Sbjct: 133 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGQFIINPDKAQMEASLLELTVAGSK 192

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  + L+
Sbjct: 193 EAINMVESGAKELSEDIMLEALLKGHQAIQELITFQEEIVAAVGKEKTEVELLQVDTDLQ 252

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+       L+ +  + EK  R    +++K+ + + +    +          ++V + E
Sbjct: 253 AEIVTKYNAQLQTAVQVEEKKAREAATEEVKETVKAEYMERFAEDENLATIMRDVVEILE 312

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + K+R DGR  + +R + AQ+  L + HGS LF RG TQA+ V+TL  
Sbjct: 313 QMEHAEVRRLITEDKIRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAP 372

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             + Q +D L    +  FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP  
Sbjct: 373 MGETQIIDGLDEEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALAQVLPSL 432

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 433 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 492

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 493 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIE 552

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++  RL+L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V+I 
Sbjct: 553 ATIATPRLELAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGMVQIF 612

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A I   +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R
Sbjct: 613 SSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTR 672

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            A  SDV++ G+ V VK++  D++G++  SMK +     K
Sbjct: 673 TANVSDVLEIGEEVDVKVIKVDEKGRVDASMKALIPRPPK 712


>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
 gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
          Length = 714

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/690 (40%), Positives = 424/690 (61%), Gaps = 7/690 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E   AGRP K+E G++   S+ + L  YGET VL  VV     ++G DFFPL V 
Sbjct: 14  NFKVYETTLAGRPFKVEMGKMCGLSNASALIRYGETCVLCNVVMSPKPREGVDFFPLNVE 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  D 
Sbjct: 74  YEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP +  M+ AS    +S +P+ GP+ G QV  ++G+ VLNP  ++ +   L L V+ T
Sbjct: 134 DCSPEIAGMIGASLVTAVSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRKVSDLALTVAAT 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            D ++M+E  AN++ ED +L+AI   H E K +I  I+ +     K  I          +
Sbjct: 194 MDKIVMIEAGANEVDEDTMLNAIKAAHVEIKKIITFINGIVAERGKPKIDFQVVGLDMDV 253

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              +     +D + +    +K VR   +  +  K+    + E+   ++ ++  V   +Q 
Sbjct: 254 FHAIQNKYLDDFKAAMDTDDKNVRDAALLPIMDKI----AEEYPDLSDADLDLVSYKMQK 309

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG TQ +   TLG  +D 
Sbjct: 310 YVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDN 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG LA RA+ PVLP   +FP
Sbjct: 370 QLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVPVLPSLEEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R VSE+  S+GS+S A++CGS+LALMDAGVPI  PVAGI+ GL+ +GD ++ + DI 
Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITEGDRWMTMLDIQ 489

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVL 539
           G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A ++ ++GRL+IL+E +  V+
Sbjct: 490 GVEDFHGDMDFKVGGTRKGITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDEIIKPVI 549

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           ++ R +L  + P++  M IP D+I++VIG GGKVI+ I      K+++ +DG V +++  
Sbjct: 550 AQPREELSRWAPKMFSMMIPTDKIKDVIGKGGKVIQDICATCNCKIDVQEDGHVFVSAVD 609

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + + A   I++I + PE+  IYKG+V ++M+FGAFV     ++GLVHIS+L T+RV +
Sbjct: 610 QEDAKRAIFTIKTIVEDPEIGAIYKGKVTRLMNFGAFVEIAPGKEGLVHISKLDTKRVER 669

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             DVV  GD + VK+ D D +G+I LS + 
Sbjct: 670 VEDVVAVGDAIVVKVTDIDQQGRINLSRRD 699


>gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 722

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/696 (42%), Positives = 433/696 (62%), Gaps = 10/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H   +E  GR L +ETG+ A+Q  G+V   YG+TVV+AT        +  DF PLTV +
Sbjct: 18  PHRYAVEIGGRELVIETGKYAKQVSGSVWVRYGDTVVMATAQASPEPIEA-DFLPLTVEF 76

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVGKIPG ++RRE RP E  IL +R+ DR IRPLF K +++E QVI+ V+  D  
Sbjct: 77  EERHYAVGKIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQA 136

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P V+   AASAALMLS +P+EGP+   +V  I+GQ+VLNP L + +   LDL V+G++
Sbjct: 137 NPPDVLGPTAASAALMLSDIPWEGPIAAVRVGRIDGQFVLNPTLQQLEHSDLDLVVAGSK 196

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--FSKL 240
           DA++MVE  AN++ EDV+++A+ + H   +P++    ++     K        +    + 
Sbjct: 197 DAIIMVEAGANEVPEDVLVEALEYAHQAIQPIVALQERMRAELGKPKFEWTPPETLPEEA 256

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV---FE 296
            E +    +E  L        K  R + ++   + +++ F  E     E +       F+
Sbjct: 257 LEALYARARERGLAEVLTTASKRERSEALERFAEALIAEFVPEEDEQAEAKRKLYAAGFD 316

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + +R ++L++  R DGR    +RDI  +V +L R HGS++F RG+TQ +  VTLGT
Sbjct: 317 EVVKRELRRLVLEEGRRADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGT 376

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D L   + + F++HYNF P +TGEV R+   SRRE+GHG LA+RA+ PVLP  
Sbjct: 377 GRDEQIIDDLGIDESDPFLVHYNFPPYSTGEVKRLRGTSRREVGHGNLAKRALRPVLPDK 436

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFII 475
             FPYT+RIV ++ ES+GSSSMAT C   LALMDAGVPI KPVAGIAMGLV  +  + +I
Sbjct: 437 DAFPYTIRIVGDVLESNGSSSMATTCAGCLALMDAGVPIKKPVAGIAMGLVMPETGEPVI 496

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKV GT  G+TA+QMD+KI G++  IM  AL+QA++ RL IL++M
Sbjct: 497 LTDILGMEDALGDMDFKVTGTRDGVTALQMDIKIKGLTPEIMRRALEQARQARLAILDQM 556

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             VL   R +L    PR+  + +P D+I  VIG GGK +R + E+ G  V+I+ DGTV+I
Sbjct: 557 EAVLPAPRPELKPHAPRILTVKVPVDKIGVVIGPGGKNVRAL-EELGVDVDIEPDGTVRI 615

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            S+  A  E A+  +  +T   +V +IY+G V ++ +FGAF+      +GL+HISQ++  
Sbjct: 616 YSADSAAAEEAKRRVEEVTREAKVGEIYEGTVTRITNFGAFITLFPGTEGLLHISQIAPG 675

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           R+ +  D +K GD + VK+   D+ G+I L    ++
Sbjct: 676 RIQRVEDHLKLGDKIKVKVNRIDEMGRIDLVRPELE 711


>gi|81301249|ref|YP_401457.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
           PCC 7942]
 gi|123556249|sp|Q31KE9|PNP_SYNE7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81170130|gb|ABB58470.1| Polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
           PCC 7942]
          Length = 716

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/702 (41%), Positives = 426/702 (60%), Gaps = 14/702 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +  + + GR ++LE G  A Q+ G+VL + G+T VL       + ++G DF PLTV+Y+E
Sbjct: 5   SKSLSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRS-TAREGIDFLPLTVDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA G+IPGG+LRRE RP E   L SR+IDR +RPLF    +++ QV+   +  D    
Sbjct: 64  RMYAAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P V+++  AS A +++ +PF GP+   +V  +   +++NP   E ++G LDL V+GT   
Sbjct: 124 PDVLAVTGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTPAG 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEEE 243
           V+MVE  ANQL E  V++AI FG+   + +I+A   L      E I+ ++ +  + LE  
Sbjct: 184 VIMVEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNTLENF 243

Query: 244 MSQMIKEDLRVSC--FIPEKYVRCKQIDDLKK---KMVSYFSSEHS-----SWNEGEIVS 293
           +       ++     F   K  R   +D++K    + ++    E       +     + +
Sbjct: 244 VRDRASSGVQQVLQHFSFTKSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKALGN 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
            F+ +   ++R  +L   VR+DGR  + VR IS+QVGLL  R HGS LF RG TQ + + 
Sbjct: 304 TFKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIA 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L    +  ++ HYN  P + GE   M +P RREIGHG LA RA+ PV
Sbjct: 364 TLGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERALLPV 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++GD+
Sbjct: 424 LPSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDE 483

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G ED LG MDFKVAGTD GITA+QMDMKI G+   I+  A+ QAK  RLHIL
Sbjct: 484 YRVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARLHIL 543

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N+M + ++  R  L  + PR+  + I P+QI  VIG GGK IR I EQTGAK++I+D G 
Sbjct: 544 NKMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIEDTGA 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I++        A+ +I  +T       +Y G+V +++  GAFV F   ++G++HISQ+
Sbjct: 604 VTISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQI 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +  RVA+  D +  GD V VK+ + D +G++ L+ K +D   
Sbjct: 664 ADYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGIDPEE 705


>gi|153939959|ref|YP_001391710.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum F
           str. Langeland]
 gi|187610258|sp|A7GG00|PNP_CLOBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152935855|gb|ABS41353.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum F
           str. Langeland]
          Length = 702

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/691 (40%), Positives = 435/691 (62%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      +  ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKEPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF   Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPNGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLE 241
           + ++MVE    ++ E+ + +AI+FG  ECK ++    +      K     +  K   ++E
Sbjct: 182 ERIMMVEAGGQEIDEETMYNAILFGFEECKNIVAFQEEAVAKLGKTKDEQVLYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+ +   + ++ + +I +K  R  Q+D +K+K+   FS ++      +I  V    Q +
Sbjct: 242 KEVKRFAFDMIKEAMYIMDKDERNAQLDKVKEKISEEFSQKYED-KGADIKEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++L++  R DGR  + VR I  +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 IVRNMLLNEDRRPDGRAFDEVRPIGCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++  +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +FPY
Sbjct: 361 ILDGIAEEESKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSQEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLEREKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S + +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGKVI  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKVINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           chlorochromatii CaD3]
 gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3]
          Length = 728

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/720 (45%), Positives = 464/720 (64%), Gaps = 29/720 (4%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFP 58
           MF      I+   GR L +ETG++A+Q+DGA +   G+T+VLATVV  +     GQDFFP
Sbjct: 1   MF--VQKSIDLGHGRILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFP 58

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           L V Y+E+  A G+ PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+II+V+
Sbjct: 59  LQVEYREKYSAAGRFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYYETQIIISVI 118

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLF 177
             D  +   V+  +AASAA+M+S +PF+ P+   +V  +NG Y++NP ++E  +  +D+ 
Sbjct: 119 SSDQVNDGDVLGGLAASAAIMVSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDIDMC 178

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKD 236
           + GT D + M+E E N++SE  +L+AI FGH   + +     ++A   AK   + + +  
Sbjct: 179 IGGTNDTICMLEGEMNEISETEMLEAIQFGHTAIRKLCVLQQEVAAEVAKPKRLFVPTVI 238

Query: 237 FSKLEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSY--------FSSEHSSWN 287
            ++L+  +    +  LR   + P  K  R ++   +  + ++          SSE +  +
Sbjct: 239 PTELDSFVRANCQSRLRELAYTPLGKEERAERTAAIYNETLAATLEHFRATISSEEAQAD 298

Query: 288 --------EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
                   E  I      ++ +V+R ++LD   R+DGR  + VR I+ ++GL+ R HGS+
Sbjct: 299 TAKALCLNEHIIEDQIHAVEKEVMRHMILDDAKRLDGRALDQVRPITIELGLIPRAHGSA 358

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQA+V +TLGT++D Q VD+L+ +    F +HYNF P + GE  R+G+  RREI
Sbjct: 359 LFTRGETQALVTLTLGTQKDAQSVDNLTNSDDKRFYLHYNFPPFSVGECGRLGSIGRREI 418

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA R+I  V P  A+FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV
Sbjct: 419 GHGNLAERSIKMVAPTEAEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPV 478

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +GIAMGL+K+ D + +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  
Sbjct: 479 SGIAMGLIKENDKYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHIVEN 538

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA++GRLHILNEM K +  SR  L  + PR+  + IP D I  VIG GG+ IRGI E
Sbjct: 539 ALEQARKGRLHILNEMEKAIPASRTDLATYAPRLTTIKIPSDCIGMVIGKGGETIRGITE 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVH 638
           +TGA++NI DDGTV IA ++    +AA   I+S+T  PEV  IY G+V  V D  GAFV 
Sbjct: 599 ETGAEINIADDGTVTIACTTKEGTDAALATIKSLTAKPEVGNIYVGKVRDVRDELGAFVE 658

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQN 693
           F    DGLVHIS++S+ RVAK SD +K GD V VKL+D   D R    K  LS+K ++Q 
Sbjct: 659 FLPKTDGLVHISEISSTRVAKVSDHLKVGDKVTVKLVDVRKDPRTGKTKFALSIKALEQP 718


>gi|255524222|ref|ZP_05391181.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|296185343|ref|ZP_06853753.1| polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|255512047|gb|EET88328.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|296050177|gb|EFG89601.1| polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
          Length = 709

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/689 (41%), Positives = 435/689 (63%), Gaps = 5/689 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T+E   AGR LK++ G++   S+ A+L +YGETVVL         ++G DFFPL++ Y+
Sbjct: 3   QTLETTVAGRTLKIDFGKVGMLSNCALLVSYGETVVLINANASEKPREGVDFFPLSIEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYAVGKIPGGFIKREGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVEQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           +P ++++  AS AL LS +PF  P+    V  ++ ++V+NP L++  + +L+L V  T++
Sbjct: 123 APDILAINGASIALSLSSIPFNTPLGAVSVGLVDDEFVINPTLEQRGKSTLNLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+MVE   +++ EDV+ DAI+FG  ECK ++    +  +   K+ +        + LE+
Sbjct: 183 RVMMVEAGGSEIPEDVMYDAIMFGFEECKKIVAFQEEAMEKLGKQKVEPKLYKVDEGLEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+     E ++ + +I +K  R   ID +K+K+   F  ++   N  +I  V   +Q ++
Sbjct: 243 EVRDFSFEMIKEAMYIMDKDERNAAIDSVKEKINDEFGEKYPD-NGADIAEVVYKLQKEI 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L++  R DGR  E +R IS +VGLL RTHG+ LF RG TQ + V TLG   D Q 
Sbjct: 302 VRNMLLNENRRPDGRGFEEIRPISCEVGLLPRTHGTGLFTRGLTQVMTVATLGALGDVQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GEV  +  P RREIGHG LA +A+ P++P    FPYT
Sbjct: 362 LDGIGSEEFKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAEKALEPLIPNEDNFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSKEKVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q D KI G+S + +   L +A++ RL IL +++  +S
Sbjct: 482 GIEDFFGDMDFKVAGTEVGITAIQFDTKIHGLSNDCIKETLDKARKARLFILEKINDCIS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R +L ++ P+   M+I PD+IR+VIG GGKVI  I+ +TG K++I +DG + +     
Sbjct: 542 GPREELSKYAPKTYTMSIDPDKIRDVIGPGGKVINKIIAETGVKIDIKEDGKIFVMCDDS 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A ++I  +T   +  +IY G+V K  +FGAFV     ++GLVHIS+L   RV K 
Sbjct: 602 TCAKRALKIIDDLTREVKSGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            D+V  GD + VK+ D D++G+I LS K 
Sbjct: 662 EDIVSVGDEILVKVTDIDNQGRINLSRKD 690


>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
 gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
          Length = 703

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/700 (44%), Positives = 459/700 (65%), Gaps = 6/700 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL-KDGQDFFPLTVN 62
           +  VE    G+ L +ETG  A+Q+DGA +   G+T+VLAT V  +   K+  DF PLTVN
Sbjct: 1   MTIVERTINGKKLTIETGWYAKQADGACVIRMGDTMVLATAVSSKEPPKEFLDFLPLTVN 60

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQER YA GKIPGG+++RE +PT +E L+SR+IDRSIRPLF K YK E QVII  +  D 
Sbjct: 61  YQERFYAAGKIPGGFVKREGKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITTISADQ 120

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGSLDLFVSGT 181
           E+ P ++S++AAS +L LS +PF GPV G +V  + NG        + D   L+L ++GT
Sbjct: 121 ENDPAIISILAASCSLCLSDIPFLGPVAGVRVSRFENGLKAFASLKEIDDSRLNLILAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA+ M+E  A +LSED ++DAI+FG +    +++A  ++ K  AK        D S+ +
Sbjct: 181 KDAINMIEAGAGELSEDEMVDAIMFGKDNIDILLDAQEEIIKKAAKPKREYIPIDVSEDI 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFEDI 298
             ++     ++L  +  I EK  R   I+ +  K+        E   + E +  + FED+
Sbjct: 241 VNKIEAFAADELMRAVNIKEKKKRNSTIEAIFNKVKEKVVEEFEDEDFIEEKTAAAFEDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
              +VRT +++  VR+DGR  + +R I+ +VG+L R HGS++F RG+TQA+V  TLG+RE
Sbjct: 301 VKNIVRTKIINTGVRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLGSRE 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +S      FM+HYNFLP +TGEV R+G P RREIGHG LA+RAI P+LP    
Sbjct: 361 DAQIIDDVSEEGYERFMLHYNFLPFSTGEVKRLGPPGRREIGHGNLAKRAIEPMLPSEDD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VS+I ES+GSSSMATVCGS+L+LMDAGVPI KPV+G+AMGL+K    + IL+D
Sbjct: 421 FPYAIRVVSDILESNGSSSMATVCGSTLSLMDAGVPIKKPVSGVAMGLIKYEGGYAILTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDH G MDFKVAGT  GITA+QMD+KI G+   ++  AL +AK  RL ILN+M  V
Sbjct: 481 ILGDEDHYGDMDFKVAGTKDGITALQMDIKITGVDAVLLKEALYKAKEARLFILNKMLAV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L   R  +  + P++  + I P++I+++IG GGK I+ I+E+T  K++I+ DG + +  +
Sbjct: 541 LDSPRPDISPYAPQIRTLTIEPEKIKDLIGPGGKTIKSIIERTNVKIDINPDGKINVYGT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             ++++ A E+I+S+T   +   + +G V ++  +GAF+     ++GL+HISQ+S +RV+
Sbjct: 601 MDSKLDEAMEIIKSLTTTIKEGDVIEGVVTRIEKYGAFIKLLPNKEGLLHISQISNDRVS 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-VVDQNTGKP 697
              DV+  GD + VK+ + D+ G+I LS K ++++N  + 
Sbjct: 661 NIYDVLNIGDKIRVKVTNIDELGRIALSRKILLNENPDED 700


>gi|56751675|ref|YP_172376.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
           PCC 6301]
 gi|81561823|sp|Q5N1G4|PNP_SYNP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56686634|dbj|BAD79856.1| polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
           PCC 6301]
          Length = 716

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/702 (41%), Positives = 425/702 (60%), Gaps = 14/702 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +  + + GR ++LE G  A Q+ G+VL + G+T VL       + ++G DF PLTV+Y+E
Sbjct: 5   SKSLSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRS-TAREGIDFLPLTVDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA G+IPGG+LRRE RP E   L SR+IDR +RPLF    +++ QV+   +  D    
Sbjct: 64  RMYAAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P V++   AS A +++ +PF GP+   +V  +   +++NP   E ++G LDL V+GT   
Sbjct: 124 PDVLAATGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAGTPAG 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEEE 243
           V+MVE  ANQL E  V++AI FG+   + +I+A   L      E I+ ++ +  + LE  
Sbjct: 184 VIMVEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNTLENF 243

Query: 244 MSQMIKEDLRVSC--FIPEKYVRCKQIDDLKK---KMVSYFSSEHS-----SWNEGEIVS 293
           +       ++     F   K  R   +D++K    + ++    E       +     + +
Sbjct: 244 VRDRASSGVQQVLQHFSFTKSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPKALGN 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
            F+ +   ++R  +L   VR+DGR  + VR IS+QVGLL  R HGS LF RG TQ + + 
Sbjct: 304 TFKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIA 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L    +  ++ HYN  P + GE   M +P RREIGHG LA RA+ PV
Sbjct: 364 TLGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERALLPV 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++GD+
Sbjct: 424 LPSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIREGDE 483

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G ED LG MDFKVAGTD GITA+QMDMKI G+   I+  A+ QAK  RLHIL
Sbjct: 484 YRVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPARLHIL 543

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N+M + ++  R  L  + PR+  + I P+QI  VIG GGK IR I EQTGAK++I+D G 
Sbjct: 544 NKMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIEDTGA 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I++        A+ +I  +T       +Y G+V +++  GAFV F   ++G++HISQ+
Sbjct: 604 VTISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQI 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +  RVA+  D +  GD V VK+ + D +G++ L+ K +D   
Sbjct: 664 ADYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGIDPEE 705


>gi|317057303|ref|YP_004105770.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
 gi|315449572|gb|ADU23136.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
          Length = 705

 Score =  745 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/701 (39%), Positives = 440/701 (62%), Gaps = 7/701 (0%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +  T E  +AGRP+ +ETG+    ++G+    YGETVV+A V   +  ++G DFFPL
Sbjct: 1   MFENARTFETTYAGRPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+++E+ YAVG+IPG + +RE + ++  IL SR +DR IRPLF K  +N+  V++ V+ 
Sbjct: 61  SVDFEEKMYAVGRIPGSFTKREGKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLA 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D ++SP +  M+AA+ A+ +S +P+ GPV    V Y++G+ VLNP L++  +  L+L V
Sbjct: 121 VDPDNSPEITGMIAAAIAISISDIPWNGPVASINVGYVDGELVLNPTLEQRAKNELNLTV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +G+ D ++M+E  AN++ +D++L AI  GH E K ++E I  + K   K     +S +  
Sbjct: 181 AGSADKIVMIEAGANEIPDDLMLKAIETGHTEIKKMVEFIKGIQKEIGKPKFEFESMEVD 240

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             L +E+  M+ ED++ +    +K +R  ++  +   +   +  ++       +  V   
Sbjct: 241 HDLFDEIEAMVGEDVKKALDTDDKNIRDARMQPIYDAVHEKYDEQYPDQG-AMLEEVLYK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q K+VR  + +   R+DGR  + +R ++A+VG+L R HGS +F RG TQ + + TLG  
Sbjct: 300 LQKKIVRNWLYE-GKRVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTICTLGPV 358

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L       +M  YNF   + GE      P RREIGHG LA RA+ PVLP   
Sbjct: 359 SDAQKLDGLDEETSKRYMHQYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSVD 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-KDGDDFIIL 476
           +FPY +R VSE+  S+GS+S  ++CGS+LALMDAGVPI +PVAGI+ GL+ K+   ++ +
Sbjct: 419 EFPYAIRCVSEVLSSNGSTSQGSICGSTLALMDAGVPIKEPVAGISCGLITKEDGSWMTM 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            DI G ED  G MDFKV GT +GITA+Q+D+K+ G++ +I+  A ++ ++ R++IL+E+ 
Sbjct: 479 VDIQGLEDFYGDMDFKVGGTKNGITAIQVDIKVDGLTMDIIASAFEKTRKARMYILDEIM 538

Query: 537 -KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K + E R ++ ++ P++    +P D+IR VIG GGKVI+ I  +   K++I +DG+V +
Sbjct: 539 LKAIPEVRPEVSKWAPKMLSTKVPVDKIREVIGSGGKVIQKISAECDVKIDISEDGSVFV 598

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +     + + A  +I +I + PE+  IYKG+VV++M+FGAFV     +DGLVHIS+L  +
Sbjct: 599 SGLDKEKAQQAINIINTIANDPEIGAIYKGKVVRIMNFGAFVEIAPGKDGLVHISKLDNQ 658

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           RV K  DVV  GD + VK+++ DD+G+I LS K    +  K
Sbjct: 659 RVEKVEDVVSIGDEIVVKVMEIDDQGRINLSRKDALADLAK 699


>gi|298528722|ref|ZP_07016126.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512374|gb|EFI36276.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 739

 Score =  745 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/702 (45%), Positives = 465/702 (66%), Gaps = 8/702 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   +        +  ETG++A Q+ G+VL   G+TVVL T V    +++   FFPLTV
Sbjct: 5   FNSTKITSVAGDCKINFETGKMANQAHGSVLVQSGDTVVLVTAVTQP-MENNPGFFPLTV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           NYQE +YA GKIPG Y RRE  RP+E E L+SR+IDRSIRPLF + + +E QV+  V+  
Sbjct: 64  NYQEMSYAAGKIPGSYFRREIGRPSERETLVSRLIDRSIRPLFPETFNDEVQVMATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  + P ++++  ASAAL +S +PF GP+ GA+V YI+ +++LNP L   DQ  L L V+
Sbjct: 124 DPVNDPDILAISGASAALHMSKIPFMGPLAGARVGYIDDEFILNPSLKLLDQSDLSLMVA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            T++ V+MVE  A+ + ED+V  AI +   +  P++++  +L   C +E + I ++    
Sbjct: 184 STRNGVVMVEGVADFVPEDIVARAIDWASQQVIPILDSQEELRSQCGREKMEIPAEPERD 243

Query: 239 -KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295
            +LEE + +M   DL  +     K  R     ++K+++ +    +    +E   +   +F
Sbjct: 244 LELEEMVKEMAAGDLARALETQGKMHRKNAKSEVKERVQASLQEKLGPESERLDKFGGIF 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +D++  ++R  +  +K+R+DGRD +TVR +S +VGLL RTHGS+LF RG+T A+ + TLG
Sbjct: 304 KDLEKSIMREKISSEKIRIDGRDLKTVRPLSMEVGLLPRTHGSALFTRGETTALTIATLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  D Q++++LSG     FM+HYNF P   GEV  +  PSRREIGHG LA RAI PVLP 
Sbjct: 364 SSTDIQHIETLSGDSSKSFMLHYNFPPYCVGEVKFLRGPSRREIGHGVLAERAIQPVLPS 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
           +  FP+T+R+VSEI +S+GSSSMATVCG +LALMDAG+P+ +PVAGIAMGL+++ D++++
Sbjct: 424 SEDFPFTIRLVSEIMDSNGSSSMATVCGGTLALMDAGIPVKEPVAGIAMGLIRENDEYLV 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAG+  GITA+QMD+KI GIS  IM  AL QA   R HIL++M
Sbjct: 484 LTDILGDEDHLGDMDFKVAGSYDGITAVQMDIKISGISGEIMHQALDQALEARRHILDQM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +V+ E R +L  F P++E++ +  ++I++VIG  GK I+ I  +TG+ ++I+D G + I
Sbjct: 544 KQVIDEPRKELSPFAPKMEVIHVDTNKIKDVIGPSGKHIKAITAETGSSIDIEDSGKISI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + S   ++  +EMI      PE+ K Y+G V +++DFGA V      DGLVHISQL T 
Sbjct: 604 FAPSEEILQKTKEMILFYNQKPELGKDYEGVVTRLLDFGAVVEILPGLDGLVHISQLDTA 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS-MKVVDQNTGK 696
           RV K SDVV  GD + VK+++ DDRGK++LS M V+ +  GK
Sbjct: 664 RVEKVSDVVNIGDKIKVKVIEIDDRGKVRLSRMAVLMEEQGK 705


>gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 712

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/697 (43%), Positives = 454/697 (65%), Gaps = 4/697 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  V +E  GRPL+ +TG++A+Q+DGAV+ + G+T+VL T V     ++G DFFPL V Y
Sbjct: 3   ISEVAVEVGGRPLRFQTGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPGG+++RE +PT+ E+L SR+IDRSIRP+F K ++N+ QV+  V+  D E
Sbjct: 63  RERAYAAGKIPGGFVKREGKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVVAFVISADQE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P V+++  ASAAL +S +PFE PV   +V  +NG+ V+NP  ++ Q   ++L VSGT+
Sbjct: 123 NDPAVLAINGASAALHISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNADINLVVSGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLE 241
           DAV+MVE  A ++ E+ +LDAI   H E K  I A  +L  +  KE    I      + +
Sbjct: 183 DAVVMVEGGAKEVPEEEILDAIELAHEEIKKSIRAQQELRDLAGKEKYEFIAPSLDEETK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++ + + E +     I +K+ R +++ +L++ M    +       +      F + + K
Sbjct: 243 AKIEKWVFERIEPVITISDKHERREKLRELRELMFIELNI--PEEEQSLAKEAFAEAEKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L++ +R+DGR    +R I+ +VGLL R HGS+LF RG TQA+V  TLGT E+ Q
Sbjct: 301 FVRQLVLERGIRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTLGTPEEYQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            V+ L   ++  FM+HYNF P   GEV+ +  P RREIGHG LA RA+ PV+P+  +FPY
Sbjct: 361 LVEGLMPEEQKRFMLHYNFPPFCVGEVAPLRGPGRREIGHGALAERALAPVIPEEDEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VS+I ES+GSSSMATVCG SL+LMDAGVPI   VAGIAMGL+ +GD F++LSDI G
Sbjct: 421 VIRVVSDILESNGSSSMATVCGGSLSLMDAGVPIKAQVAGIAMGLILEGDKFVVLSDILG 480

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+K+ GIS +I++ AL+QA+ GR++IL++M  V+S 
Sbjct: 481 DEDHLGDMDFKVAGTRKGVTAIQMDLKVKGISRDILMTALKQAREGRMYILDKMDAVISS 540

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  +  + PR+    I P++ R++IG  GK I+ I+++ G K+ I +DGTV +++ S  
Sbjct: 541 PREGISPYAPRIVSTKIDPEKTRDLIGPSGKTIKAIIDKAGVKITIKEDGTVLVSAPSED 600

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A +MI  +T   E+   Y G+V +V ++GAFV     + GL+HIS+L  E      
Sbjct: 601 AAAQAIKMIEDVTKDLEIGNTYLGKVTRVENYGAFVELAPGKIGLIHISKLPPEMRENIF 660

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + +K  D + VK+++FD  G+ KLS   V     + +
Sbjct: 661 ESIKVSDIIPVKIIEFDQMGRPKLSRIDVTPEEERKL 697


>gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 718

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/698 (41%), Positives = 433/698 (62%), Gaps = 14/698 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H   +E  GR L +ETG+ A+Q  G+V   YG+TVV+AT        +  DF PLTV ++
Sbjct: 12  HRYSLEVGGRTLSIETGKYAKQVSGSVWVRYGDTVVMATAQASDKPIEA-DFLPLTVEFE 70

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG ++RRE RP E  IL +R+ DR IRPLF K +++E QVI+ V+  D E+
Sbjct: 71  ERHYAVGKIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQEN 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDA 184
           +P ++  +AASAAL LS +P+ GP+   +V   +G+ VLNP   E +  LDL V+G++DA
Sbjct: 131 TPDILGPIAASAALTLSDIPWNGPIASVRVGLQDGRLVLNPVAAE-ESDLDLVVAGSKDA 189

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKLE 241
           ++MVE  A ++ E+ ++ A+ F H   +P+IE   ++     K    + + +     + E
Sbjct: 190 IIMVEAGAREIPEEQLVQALEFAHRAMQPIIELQEQMRAELGKPKFEVAAPEKLGDEETE 249

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSEHSSWNEGEIV-------S 293
                 ++  L        K  R   ++  ++ +V+   +S  S+ +E E          
Sbjct: 250 AFRRLALERGLSNVLLTAAKGERSAALEAFRETIVAEVLASTDSALDEVEAQRRRRLYQQ 309

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+++  + +R ++L++  R DGR +  VR I  +  +L R HGS++F RG+TQ + VVT
Sbjct: 310 AFDEVVKRELRRLILEENRRADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLGVVT 369

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q VD L     + F++HYNF P +TGEV R+   SRRE+GHG LA+RA+  VL
Sbjct: 370 LGTGRDAQLVDDLGLDTEDPFLVHYNFPPYSTGEVKRLRGVSRREVGHGNLAKRALRAVL 429

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+R+V ++ ES+GSSSMAT C   LALMDAGVPI KPVAG+AMGLV +GD  
Sbjct: 430 PSQEEFPYTIRVVGDVLESNGSSSMATTCAGCLALMDAGVPIKKPVAGVAMGLVSEGDRH 489

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G ED LG MDFKV GT  G+TA+QMD+KI G+S   +  AL QA+  RL IL+
Sbjct: 490 VVLTDILGLEDALGDMDFKVTGTKDGVTALQMDIKISGLSSETLRQALMQAREARLFILD 549

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M++VL E R +L    PR+  + +P ++I  +IG GGK +R + E+ G +V+I+ DGTV
Sbjct: 550 KMTEVLPEPRRELKPQVPRILTLKVPVEKIGAIIGPGGKNVRAL-EELGVEVDIEQDGTV 608

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++ S++    E AR  I   T    + +IY+G V ++ +FGAFV      DGL+HISQ++
Sbjct: 609 RLFSANAIAAEEARSRILGQTQEARIGEIYEGTVSRITNFGAFVTLFPGTDGLLHISQIA 668

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
             RV +  DV+K GD + VK+   D++G++ L    ++
Sbjct: 669 PGRVERVEDVLKLGDKIRVKVNKIDEKGRVDLVRPELE 706


>gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
 gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
          Length = 700

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/700 (44%), Positives = 453/700 (64%), Gaps = 15/700 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+ + V++     P+  ETG  A+Q++G++    G +VVL T V  +   +  DFFPLT
Sbjct: 5   IFN-YEVKLTEDSEPIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY E+ YAVGKIPGG+++RE +P++ E LISR+IDR IRPLF + ++NETQ+I  V+  
Sbjct: 64  VNYIEKFYAVGKIPGGFIKREGKPSDKETLISRLIDRPIRPLFPEGFRNETQIIATVVSS 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D  +S  ++++ AASAALM+S +PFEGP+   +V  ING+YV+NP     D   +++ V+
Sbjct: 124 DQVNSTDILALNAASAALMISDIPFEGPIGAVRVGKINGEYVINPSAAIFDDLEMNIVVA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDS 234
           GT+D+++MVE      SE+ V++A+ FGH   K ++E   ++     KE        +  
Sbjct: 184 GTEDSIVMVEAGMKNCSEEDVVNALEFGHEAIKKLVEVQKRMRDEIGKEKFEYMDFSVSE 243

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEI 291
            D +KL +E    I + L+ +  IP K  + + ID +K++       E       N+G  
Sbjct: 244 DDLNKLYDE----IGDKLKEAVLIPGKLEKYEAIDKVKEEYFEKLKEELGDEFEENKGYY 299

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             ++++++ KV R + L+   R+DGR    +R I  +V LL   HGS+LF RG+TQA+V 
Sbjct: 300 NELYQEVEKKVFRDITLNSGKRVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVT 359

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT+ D Q +D L G     FM+HYNF P + GE+  + AP RREIGHG LA RA+  
Sbjct: 360 ATLGTKFDSQLLDDLEGETYKRFMLHYNFPPFSVGEIGFLRAPGRREIGHGFLAERALAS 419

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +LP   +FPYT+R+VSEI ES+GSSSMATVCG SLALMDAGVPI   VAGIAMGL+ +GD
Sbjct: 420 MLPGEDEFPYTIRVVSEILESNGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGD 479

Query: 472 D-FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D ++ILSDI G EDHLG MDFKV GT++GITA+QMD+KI G+   I+  AL QAK GRL 
Sbjct: 480 DNYVILSDIMGIEDHLGDMDFKVTGTETGITALQMDIKIKGLKREILEKALAQAKEGRLF 539

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M  VL++ R ++    PR   + I P+++  +IG  GK I+ I+++TG K++I ++
Sbjct: 540 ILQKMKAVLAKPREEVSPKAPRFVKVKINPEKVGLLIGPAGKTIKSIIDKTGVKIDILEE 599

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + I  ++   I++A EMI ++T    V KIY  +V +V+D+GAFV      +GL+H+S
Sbjct: 600 GELHIFGNNKEAIDSAIEMIEAVTQELTVGKIYNAKVKRVVDYGAFVELFPGVEGLLHVS 659

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           Q S ER+    D VK GD++ V+ L  DD+G+IKLS K +
Sbjct: 660 QFSKERIENIRDHVKVGDSLDVEYLGKDDQGRIKLSRKNL 699


>gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 697

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/687 (47%), Positives = 458/687 (66%), Gaps = 6/687 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H V +   GR L LETGR+A+Q++GAV A Y  + VLATV    S  +  DF PL V Y
Sbjct: 2   PHQVTVSIGGRDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+L+RE RP + EIL+SR+IDR +RPLFSK +K E Q+I   +  D  
Sbjct: 62  NEKYYAAGKIPGGFLKREGRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPTTVSADQI 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P +V+M AASAA+ +S +PF GPV   ++  ++ + ++NP  D+  + +L++ VSGT+
Sbjct: 122 NPPDIVAMNAASAAVCVSDIPFAGPVGAVRIANVDDELIINPSFDQISRCTLEIVVSGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKL 240
           D + MVE  A ++ E+++L AI       K + EA  +L  +  KE  P+V++ K   + 
Sbjct: 182 DGITMVEGGAKEVPEELLLSAIALAEPAIKKLCEAQEQLMALAGKEKLPLVVEEKKLER- 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            +EM       +  +CF+  K  R   +  +K +    F+ + +  NE    ++ E+++ 
Sbjct: 241 RQEMWDFAYPKMEEACFVKGKMNRGAAVKAVKTETAEAFADDLNEDNERLFNALMEEMET 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           KVVR+ +LDK VR DGRD ETVR I+ +VG+L R HGS+LF RG+TQ++ V TLGT  DE
Sbjct: 301 KVVRSSILDKGVRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDE 360

Query: 361 QYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D++ G +   +FM+HYNF P + GE  R+    RREIGHG LA RA+  VLPQ   F
Sbjct: 361 QMMDNIDGDKTYENFMLHYNFPPFSVGETGRL-TTGRREIGHGHLAHRALEAVLPQKKDF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVCG +L+L+ AGVPI KPVAGIAMGLV +GD   +L+DI
Sbjct: 420 PYTIRVVSEILESNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAAVLTDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT+ GITA QMD+KI GIS ++M  AL+QAK+GR+HIL  M+  L
Sbjct: 480 LGEEDHLGDMDFKVAGTEDGITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMNATL 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E    + +F P++  + +  D+I  +IG GGK I+ I EQ+G++VNIDD+GTV I   +
Sbjct: 540 KEPVSDVSDFAPKILSLKVDVDKIGAIIGPGGKTIKAIAEQSGSEVNIDDNGTVTIFGKT 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             + E ARE I++I + PEV KIY+G V ++MDFGAFV     ++GL HIS+LS +RV  
Sbjct: 600 KEKAEKAREFIKAIVEEPEVGKIYEGTVKRIMDFGAFVEILPGKEGLCHISKLSRKRVNS 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            SDV+     + VKL++ D +G++ LS
Sbjct: 660 VSDVLAVDQKIPVKLIEIDRQGRLNLS 686


>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
 gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
          Length = 721

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/696 (43%), Positives = 442/696 (63%), Gaps = 10/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H       GR L +ETG+ ARQ+ G+V   YGET+V+AT    +   D   F PLTV +
Sbjct: 11  PHRFSAVLGGRELVIETGKYARQASGSVWVRYGETIVMATAEGSKEPID-MPFLPLTVEF 69

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA+GKIPG ++RRE RP E  IL +RM DR IRPLF K +++E QVI+ V+  D +
Sbjct: 70  EERHYAIGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVILTVLAADQQ 129

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+  +AASAALMLS +P++GP+   +V  +NG+ VLNP L + D+  LDL V+G++
Sbjct: 130 NPPDVLGPLAASAALMLSDVPWDGPIASVRVGRVNGELVLNPTLQQLDESDLDLIVAGSK 189

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSK 239
           DA++MVE  A ++SED++++A+ F H E +P+I    ++ +   K              +
Sbjct: 190 DAIIMVEAGAKEVSEDLLVEALDFAHREMQPLIALQEEMREKLGKPKFAWSPPPTLTDEE 249

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
           LE      I+  L+       K+ R + +D  +  +V+    E     E         F 
Sbjct: 250 LEAFYRLAIERGLKDVLLTASKHERAEALDAFRDALVAEIVPEEDEDAEVRRALYKQAFG 309

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  + +R +++++K R DGR    +R I  +V +L R+HGS++F RG+TQ +  VTLGT
Sbjct: 310 DVTKRELRRMIVEEKKRADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVTLGT 369

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D L   +  DF++HYNF P +TGEV R+   SRRE+GHG LA+RA+ P+LP+ 
Sbjct: 370 GRDEQIIDDLGLDESEDFLVHYNFPPYSTGEVKRLRGVSRREVGHGNLAKRALKPMLPEK 429

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFII 475
             FPYT+R+V ++ ES+GSSSMATVC   LALMDAGVPI KPVAGIAMGLVK +  + ++
Sbjct: 430 DAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIKKPVAGIAMGLVKPEEGEPVV 489

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKV GT  G+TA+QMD+K+ G+   +M  AL+QA+  RL IL++M
Sbjct: 490 LTDILGMEDALGDMDFKVTGTRDGVTALQMDIKVQGLDAAVMRRALEQARAARLAILDQM 549

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +VL E R +L  F PR+  + IP D+I  VIG GGK IR + E+ G  ++I++DGTV+I
Sbjct: 550 EQVLPEPRRELKPFAPRILALKIPVDKIGAVIGPGGKNIRAL-EELGVSIDIEEDGTVRI 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            S+     E A+  I ++T   +V ++Y+G VV+  +FGAF+      +GL+HISQ++ E
Sbjct: 609 YSAEGGAAEEAKARIENLTREAKVGEVYEGVVVRTTNFGAFIQLFPGTEGLLHISQIAEE 668

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           RV K  D +K GD + VK+   D++G++ L    ++
Sbjct: 669 RVDKVEDHLKVGDKITVKVNRIDEKGRVDLVRPELE 704


>gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 707

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/694 (42%), Positives = 448/694 (64%), Gaps = 5/694 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +   V+ E  G P  +ETG  A+Q++GAV+   G+T VL   V     +   DF PLTV 
Sbjct: 4   EEIKVQTEVNGAPFIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+++RE +PT+ EIL++R IDR IRPLF K + N+  +    +  D 
Sbjct: 64  YREKYYAYGKIPGGFVKREGKPTDREILVARNIDRPIRPLFPKGFYNDIVITAYTLSADD 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           +  P V+ +V ASAAL +S +PFEGP+ G +V  +NG++++NP   +  Q  +++ V+G+
Sbjct: 124 KYDPDVLGIVGASAALHISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQADIEIVVAGS 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA++MVE  A ++ E+ +L+A++FGH E K +IE   +L   C KE I +   +    L
Sbjct: 184 KDAIVMVEGGAKEVPEEDILEAMMFGHQEIKKLIELQEELRLKCGKEKIQVAIDEEEIIL 243

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           ++++ +   E ++ +  I +K  R K I+ + ++       E       +   +++DI +
Sbjct: 244 KDKLKEFSYEKIKEAFKITDKKQRNKTINAIFEEAFKTL--EIPEEKIKKASFIYKDIVS 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            V+R  +L++ +R+DGR  E +R I  +VG+  R HGS++F RG TQA V VTLG+  + 
Sbjct: 302 NVMRDNILNEGIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEG 361

Query: 361 QYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q  +S+  G     FM+HYNF P +TGE     A SRREIGHG LA RA+ P++P   +F
Sbjct: 362 QIEESIEAGEVMKRFMLHYNFPPFSTGEAKPPRATSRREIGHGNLAERALEPLIPPEEEF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS+I ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K  D F+ILSDI
Sbjct: 422 PYAIRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKAEDKFVILSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKVAGT  G+T++QMD+K+ G+++ I+  ALQQA+ GR +IL+ M + +
Sbjct: 482 LGDEDHLGDMDFKVAGTRDGVTSIQMDIKVKGLTKEILEKALQQARDGRNYILDLMYQAI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R ++  + P V  + + PD+I  +IG  GK I+ I+E+T  K+++D +G VKI ++S
Sbjct: 542 PEPRKEVSPYAPTVTTLRVLPDKIPIIIGPAGKNIKKIIEETKVKIDLDPEGLVKIYATS 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A  MI  +    EV ++Y G+V +V D+GAFV     R  L+H+SQ++ ER+  
Sbjct: 602 KEAAEKAVSMINELILDVEVGEVYMGKVTRVEDYGAFVELLPGRLSLLHVSQITGERLKS 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             + +K GD + VK+ + DD+G+IK+S+K V +N
Sbjct: 662 AKEKIKVGDVLKVKVSEIDDQGRIKVSLKDVPEN 695


>gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS]
 gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS]
          Length = 733

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/717 (45%), Positives = 463/717 (64%), Gaps = 29/717 (4%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFP 58
           MF     +I+   G+ + +ETG++A+Q+DG+ + T  +T+VLATVV  ++     QDFFP
Sbjct: 1   MF--IKKKIDLGHGKVITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFP 58

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           L V Y+E+  A GK PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+II+V+
Sbjct: 59  LQVEYREKYSAAGKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVI 118

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLF 177
             D  +   V+  +AASAA+M+S +PF  P+   +V  ING +++NP ++E  Q  +D+ 
Sbjct: 119 SSDTINDADVLGGIAASAAIMVSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDMDIC 178

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           + GT+D + M+E E  ++SE  +LDAI FGH+  K +     +LA   AK          
Sbjct: 179 IGGTEDTICMLEGEMKEISEAEMLDAIKFGHDAIKKICALQRELAAEVAKPKRPFSPTVA 238

Query: 238 S-KLEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKK----KMVSYFSSEHSS------ 285
             +L   + +    +L+   + P  K  R ++   +      K +++F+           
Sbjct: 239 PDELVNFVEEHCSAELKALAYTPLAKEERAEKTKAIYTQTIRKTLTHFTDRVGPDQIEAD 298

Query: 286 ------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
                  NE  I      ++ KV+R ++LD   R+DGR  E VR IS ++GL+ R HGS+
Sbjct: 299 PTSAFCLNEHMIEECIHAVEKKVMRHMILDDGKRLDGRTLEQVRPISIELGLIPRAHGSA 358

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQA+V +TLGT++D Q VD+L+  +   FM+HYNF P + GE+ R+G   RREI
Sbjct: 359 LFTRGETQALVTLTLGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGEIGRVGGAGRREI 418

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RAI  V+P   +FPYT+R+VS+I ES+GSSSMA+VCG +LA MD G+P+ KPV
Sbjct: 419 GHGNLAERAIKMVMPSEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPV 478

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +GIAMGL+K+GD + +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  
Sbjct: 479 SGIAMGLIKEGDRYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILET 538

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA++GRLHIL+ M++ + ESR  +G++ PR+  + IP D I  VIG GG+ IR I E
Sbjct: 539 ALEQARKGRLHILDVMAEAIPESRADIGKYAPRLTTIQIPVDAIGMVIGKGGETIRSITE 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVH 638
           +TGA++NIDDDGTV IA SS    +AA E I+++   PEV  IY G+V  + D  GAFV 
Sbjct: 599 ETGAEINIDDDGTVTIACSSPEATKAAVETIKTLVSKPEVGTIYMGKVRDIRDELGAFVE 658

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVV 690
           F    DGLVHIS+++ ER+AK SDV+K GD + VKL+D   D R    K  LS+K +
Sbjct: 659 FLPKTDGLVHISEIARERIAKVSDVLKVGDRIKVKLIDVRKDPRTGKTKFALSIKAL 715


>gi|326791492|ref|YP_004309313.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
           DSM 5427]
 gi|326542256|gb|ADZ84115.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
           DSM 5427]
          Length = 705

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/702 (42%), Positives = 433/702 (61%), Gaps = 8/702 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V     + AGR L +E G++A  ++G+    YG+T++LATVV   + K+G DFFPL+VNY
Sbjct: 2   VKKYSTQLAGRELSVEIGKVAGLANGSATVRYGDTMILATVVAADAPKEGIDFFPLSVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VG++PGGY++RESRP+E  IL SR+IDR +RPLF K Y+N+  +   V+  D +
Sbjct: 62  EEKFYSVGRLPGGYIKRESRPSEKAILTSRVIDRPMRPLFPKDYRNDVVITTTVLSVDQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP V +M+AAS  + +S +PF GPV   QV  ++G  V NP  +E Q   L L VS T+
Sbjct: 122 CSPEVTAMIAASLVVDISDIPFAGPVGSVQVGLVDGNLVFNPNQEERQKSDLALTVSSTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV--IDSKDFSKL 240
           D V+M+E  AN++ ED++ DAI+ GH   + V++ I  +   C K      +     +++
Sbjct: 182 DKVMMIEAGANEVPEDIMFDAIMKGHEFNQQVVQFIEAIKADCGKAKNEDYVKFGVPAEI 241

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
             E+   I +  +  + F  +K VR  Q+  LK+K++   +      +   +   F   +
Sbjct: 242 YNEIVSHIGDKQMEEAVFTDDKQVREVQLKALKEKVIVALTEAGKEEDLVYLEEAFYQFE 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L +  R DGR  + +R ++A+V L+ R HG+ LF RG TQ + V TL    +
Sbjct: 302 KKTVRRMILKESKRPDGRALDEIRSLAAEVDLVPRVHGTGLFTRGQTQVLTVTTLAALSE 361

Query: 360 EQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L        +M HYNF P + GE     AP RREIGHG LA RA+ PVLP   +
Sbjct: 362 MQTLDGLDELEISKRYMHHYNFPPYSVGEARAPRAPGRREIGHGALAERALVPVLPTEQE 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIIL 476
           FPY +R VSE+  S+GS+S A++CGS+L+LM AGVPI  PVAGI++GLV     DDF++L
Sbjct: 422 FPYAIRTVSEVLSSNGSTSQASICGSTLSLMAAGVPIKAPVAGISVGLVTGETADDFVLL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKV GT  GITA+QMDMKI G++  I+  AL+  K+ R +IL+E+ 
Sbjct: 482 TDIQGLEDFFGDMDFKVGGTHKGITAIQMDMKIKGLTPEIIKGALENTKKARFYILDEIM 541

Query: 537 -KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K +   R  L  + P +  + I P++I  VIG  GK+I  I+E+TG K++I+DDG V I
Sbjct: 542 LKAIPAVRDHLSPYAPVITQITIDPEKISEVIGPKGKMINRIIEETGVKIDIEDDGRVFI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             S   + + A +MI  I    E  + + G+V+++M+FGAFV     ++GLVHISQL+ E
Sbjct: 602 CGSDADKAQKAIQMIEGIARPIEEGQEFDGKVMRLMNFGAFVELVPGKEGLVHISQLAHE 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           RVAK  DVV  GD++ VK+++ D +G+I LS KV+     K 
Sbjct: 662 RVAKVEDVVAVGDSIKVKVIEIDKQGRINLSHKVLLPKPEKE 703


>gi|94993180|ref|YP_601279.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS2096]
 gi|123382250|sp|Q1J9S6|PNP_STRPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94546688|gb|ABF36735.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 701

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/685 (39%), Positives = 431/685 (62%), Gaps = 8/685 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G PL +E G++A+Q++GA +  YG++ VL   V  + +  G DFFPL VNY+E+ YA GK
Sbjct: 3   GNPLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAAGK 61

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            PGG+++RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  +S  + +M 
Sbjct: 62  FPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAAMF 121

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAVLMVELE 191
            +S AL +S +PF GP+ G QV YI+G++++NP  ++ + SL +L V+G+++A+ MVE  
Sbjct: 122 GSSLALSISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLELTVAGSKEAINMVESG 181

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQMIKE 250
           A +LSED++L+A++ GH   + +I    ++  +  KE   ++  +  + L+ ++      
Sbjct: 182 AKELSEDIMLEALLKGHQAIQELIAFQEQIVAVVGKEKAEVELLQVDADLQADIVAKYNA 241

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVRT 305
            L+ +  + EK  R    + +K+ + + +   ++          ++  + E ++   VR 
Sbjct: 242 QLQKAVQVEEKKAREAATEAVKEMVKAEYEERYAEDENLATIMRDVAEILEQMEHAEVRR 301

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ + K+R DGR  + +R + A V  L + HGS LF RG TQA+ ++TL    + Q +D 
Sbjct: 302 LITEDKIRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDG 361

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+   +  F+ HYNF   + GE  R GA  RREIGHG L  RA+  VLP   +FPY +R+
Sbjct: 362 LAPEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFPYAIRL 421

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L+DI G EDH
Sbjct: 422 VAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLEDH 481

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   ++E R +
Sbjct: 482 FGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVIEATIAEPRPE 541

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++IDD+G V I SS  A I  
Sbjct: 542 LAPTAPKIDTIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDDEGNVSIYSSDQAAINR 601

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            +E+I  +    +V ++Y  +VV++  FGAFV+     D LVHIS+++  R    SDV++
Sbjct: 602 TKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTTNVSDVLE 661

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
            G+ V VK++  D++G++  SMK +
Sbjct: 662 VGEDVDVKVIKIDEKGRVDASMKAL 686


>gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
 gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
          Length = 799

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/694 (45%), Positives = 452/694 (65%), Gaps = 11/694 (1%)

Query: 4   VHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
              V +E   G+ +  ETGRIA+Q+ GA   + G+ V+LAT V     K+G DFFPLTV 
Sbjct: 2   KQEVTVELAGGKRITFETGRIAKQASGAAFTSSGDVVILATAVGAPDPKEGIDFFPLTVE 61

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E  Y  G+IPGG+++RE RP+E EIL  R+IDR  RPLF   Y+NETQVI  V   D 
Sbjct: 62  YRETAYGGGRIPGGFIKREGRPSEKEILTCRLIDRPCRPLFPDGYRNETQVIAFVYSADK 121

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGT 181
           E+ P V+++ AAS A+ LS LPF+GP+   +V  I+G +++NP   E + SL ++ V+GT
Sbjct: 122 ENDPDVIAINAASCAISLSDLPFQGPIGAVRVGLIDGNFIVNPTYTERKESLINIIVAGT 181

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKD 236
           +D ++MVE  A ++ ED V+DAI FGH + K +   I +L     K      P+ ID   
Sbjct: 182 KDGIVMVESGAKEIPEDKVIDAIEFGHEQVKLICAGIDELVAKAGKAKRIVNPVEIDDAF 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           ++ L+ ++   + + L    +   K     +I ++K ++      E  +    ++   +E
Sbjct: 242 YNDLKSKVYDRVADALDTQKYA--KIDSYAKIKEIKDELKKAL-PEGDAAASKKLSKYYE 298

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ ++ R  +   ++R D R  + +R I  +VG+L RTHGS+LF RG+TQA+V  TLGT
Sbjct: 299 LLREEIFRNQVTKDRIRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGT 358

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +D Q ++S  G Q+  FM+HYNF P + GEV RM   SRRE+GHG LA RAI  VLP  
Sbjct: 359 GDDAQRMESYEGEQKKRFMLHYNFPPYSVGEVGRMTGTSRREVGHGALAYRAIEAVLPPE 418

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A+ PYTLR+VS+ITES+GSSSMA+VCG+SLALM AG+ +   VAG+AMGLVK+GD + IL
Sbjct: 419 AESPYTLRVVSDITESNGSSSMASVCGASLALMQAGISLKGSVAGVAMGLVKEGDSYAIL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI+G EDH G MDFKVAGT +GITAMQMD+KI GI+  IM  A++QA+ GRL +L++M 
Sbjct: 479 TDIAGAEDHYGDMDFKVAGTRNGITAMQMDIKIMGITPQIMREAMEQARHGRLFLLDKMD 538

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V++ +  +   + P++  + IP D+IR++IG GGK+IRGIVE T  K+++DD G V IA
Sbjct: 539 AVIASANEEKSRYAPQIRTLQIPTDKIRDLIGPGGKIIRGIVEATQVKIDVDDTGRVSIA 598

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    +  A +M+  IT VPE+ K Y G+VV++ +FGAFV      DGL+H+S+++  R
Sbjct: 599 SSDPDNLARAIQMVSDITAVPEIGKTYLGKVVRLAEFGAFVEIFPGTDGLLHVSEIAEHR 658

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V +  D ++EGD V VK+L   +  +IKLS K V
Sbjct: 659 VKEVKDELREGDQVLVKVLAI-EGNRIKLSRKAV 691


>gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK
           1622]
 gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK
           1622]
          Length = 722

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/691 (44%), Positives = 451/691 (65%), Gaps = 9/691 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
              ++     L +E GR+A+Q+DG+V+  YG+T++L T V  R  KD  DF PLTV YQE
Sbjct: 3   KKSVKIGESELSIEVGRLAKQADGSVVVRYGDTMLLVTAVSAREKKD-IDFLPLTVEYQE 61

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + Y+ G+IPG Y +RE R TE E L SR++DRS RPLF + Y  ETQ+I +V+  D E+ 
Sbjct: 62  KLYSAGRIPGSYFKREGRLTEKETLASRLVDRSCRPLFPEGYAYETQIIASVISSDPENE 121

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
             +  +  ASAAL +S +PF+GP+ G +V  + GQ V NP   + +Q  LDL ++ ++ A
Sbjct: 122 GDIHGITGASAALWVSDIPFDGPIAGIRVGRVGGQLVANPTAKQREQSDLDLVMAVSRKA 181

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKLEE 242
           ++MVE  A ++SE  ++ A+ FG    +P ++   +L +   K+       +     L  
Sbjct: 182 IVMVEGGAEEVSEADMVAALDFGFTTAQPALDLQDELRRELNKQVRSFEKPAAVDEGLRA 241

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDI 298
           ++ ++  + ++    I EK  R + +   KK+ ++    +    ++   E    +V ED+
Sbjct: 242 KVRELAMDGIKAGYGIKEKGARYEALGKTKKEALAKLKEQLGDGYTPLVEKHAKAVVEDL 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + + +R + ++   R+  R  + VR I+ +VG+L RTHGS++F RG+TQA+VV TLGT +
Sbjct: 302 KYEHMREMTVNGG-RIGDRGHDVVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSD 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ ++ L G     FM+HYNF P +  E   +  P RRE+GHG LA RA+  ++P++  
Sbjct: 361 DEQRLEMLGGMAFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMVPKSES 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VS+I ES+GSSSMA+VCG +LALMDAGVP+  PVAGIAMGLVK+GD   ILSD
Sbjct: 421 FPYTVRLVSDILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKV GT  GIT++QMD+KI G++  IM  AL+QA++GRLHIL EM K 
Sbjct: 481 ILGDEDHLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKT 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+ESR ++ ++ PR+  + I P+ I+NVIG GGKVI+ I+ +TGA +NI+D G V IAS+
Sbjct: 541 LAESRKEISQYAPRITTIQIRPEFIKNVIGPGGKVIKDIIARTGAAINIEDSGRVDIASA 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   ++AA  MI+++T   E+ KIY G V K+ +FGAFV      DGL+HIS+LS +RV 
Sbjct: 601 NGEAVKAAIAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVK 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             SDV+ EGD V VK++  D  GKI+LS K 
Sbjct: 661 SVSDVLNEGDEVLVKVVSIDKTGKIRLSRKE 691


>gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
 gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
          Length = 732

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/695 (45%), Positives = 455/695 (65%), Gaps = 6/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H +E  +AGRPL +ETGR+A+Q+ G+ +  +GET+VLA V    +      FFPLTV Y
Sbjct: 1   MHRIERTFAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSP-LPFFPLTVEY 59

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+TYA GKIPGG+++RE RP ++EIL +R+IDRSIRPLF + +KNE QV I V+  D E
Sbjct: 60  KEKTYAAGKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQE 119

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +   V+++VAAS AL  S +PF GP+ G +V  + G +VLNP   +     L+L V+G++
Sbjct: 120 NDADVLALVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSK 179

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           D+++MVE  + ++SE+ VL+++   H+  + +I    +L        +     +  + + 
Sbjct: 180 DSIVMVEGGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKMSWVKAEAPEGIT 239

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             + ++    +R +    +K+ R + ++  KK++      E    N  +I ++  D++  
Sbjct: 240 TRVKELASGRIREALNQKDKHTRIEAVERTKKELAEGLLVEFPD-NAKDIGNLLGDVEYH 298

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R+ +LD ++R+DGR  + VR IS    +L R HGS+LF RG TQA+V  TLGT +D Q
Sbjct: 299 ELRSQVLDTQLRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQ 358

Query: 362 YVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            +DS+   G     FM+HYNF P +TGEV  M   SRREIGHG LA RA+  VLP  A F
Sbjct: 359 RLDSIKEPGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQGVLPDFADF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RIVS++ ES+GSSSMA+VCG SL+L DAGVP+   VAG+AMGL+K+G+ + IL+DI
Sbjct: 419 PYTIRIVSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYAILTDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDHLG MDFKVAGT  GIT++QMD+KI G+   IM  AL QAK GRLHIL EM K L
Sbjct: 479 LGTEDHLGDMDFKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEMDKAL 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  R  L ++ PR+  + IP D+I  +IG  GK IRGI ++TGA+++++DDGTV IA+  
Sbjct: 539 AAPREDLSKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAELSVEDDGTVTIAAVG 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              +E A++M+ +IT  P V + Y+G V  V  FGAFV      + L+H+S++  ERV K
Sbjct: 599 GDSMERAKQMVMAITAEPVVGETYEGTVKTVTAFGAFVEIMPGNEALLHVSEMRWERVEK 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             DVVK+GD V VKL+D D+RG+++LSMK +    
Sbjct: 659 PEDVVKKGDRVTVKLVDRDERGRLRLSMKALLPKP 693


>gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
           DSM 2489]
 gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
           DSM 2489]
          Length = 696

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/689 (43%), Positives = 442/689 (64%), Gaps = 8/689 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  V  +   + L LETG+I +Q++G V A  G T V+ATV     +K+G DF P+TV Y
Sbjct: 2   IQRVTKKIGDQELILETGKIGKQANGCVYAQIGGTAVIATVCASSEVKEGLDFVPVTVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF   +  E Q++   +  D  
Sbjct: 62  NEKFYAAGKIPGGFVKREGRPKDKEILVSRLIDRPMRPLFETSFGREIQIVPTCVSIDGV 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQ 182
           + P +++++A+SAA+ +S +PF GPV G +V Y+NG+Y+LNP  ++ +   L++ V+GT+
Sbjct: 122 NPPDILAVLASSAAVSISDIPFHGPVAGVRVGYLNGEYILNPTYEQMEKIQLEIVVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           D   MVE  AN++SE+V+L A+         +     +L K+  KE + +   D   +  
Sbjct: 182 DGFTMVEGGANEVSEEVMLGALEKAQGFITDMCLLQEELVKLAGKEKLPLAPLDVKLENA 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQA 300
           + +       ++ +CF   K  R   +  +K K+   +S +           ++F+DIQ 
Sbjct: 242 DAIKAEAIPLMQEACFQKGKMARGNAVKAVKAKIAEKYSEQLEDEIQAKLFNALFDDIQY 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            ++R+ +L+K +R+DGR +E +R I+ +V +L R HGS+LF RG+TQ++ V TLGT  DE
Sbjct: 302 DLLRSSILEKGLRIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLAVTTLGTAMDE 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D + G +  +F++HYNF P + GEV ++    RREIGHG LARR++ P++P  ++FP
Sbjct: 362 QVYDDIEGDRTENFILHYNFPPYSVGEVGKL-TTGRREIGHGNLARRSLAPMIPSRSEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---DFIILS 477
           YT+R+VSEI ES+GSSS A+ CG  L+L+ AGVP+ K VAGIAMGL+ DG     + ILS
Sbjct: 421 YTIRVVSEIMESNGSSSQASTCGGCLSLLAAGVPMKKMVAGIAMGLITDGPQYKKYAILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G+EDHLG MDFKVAGT  GIT  QMD+KI G+S +IM  AL+QAKRGR HIL+ M K
Sbjct: 481 DILGEEDHLGDMDFKVAGTRDGITGFQMDIKIAGVSMDIMRRALEQAKRGRNHILDIMEK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S+ +  +  + P++E M I  D+I  +IG GGK ++ + +Q    +N +DDGTV I  
Sbjct: 541 CISKPQP-ISPYAPKIETMKIAVDKIGALIGPGGKNVKALCQQYNVTINTEDDGTVTIYG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S    +AA+  I+ I + PE   IY+G V ++MDFGAF+     ++GL HIS+LS  RV
Sbjct: 600 KSGVSTDAAKAAIKGICEDPEPGTIYQGTVKRIMDFGAFIEILPGKEGLCHISKLSRNRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            K SD++KEG  + VKLL+ D  G++ LS
Sbjct: 660 EKVSDILKEGQVIPVKLLEVDKMGRLNLS 688


>gi|283798318|ref|ZP_06347471.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
 gi|291073901|gb|EFE11265.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
          Length = 703

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/691 (39%), Positives = 424/691 (61%), Gaps = 9/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A Q++GA    YG+T VL+T       ++G DFFPL+V ++
Sbjct: 3   KSFSMELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP   +M+ ++ A  +S +PF+GP    Q+  I+G++++NP   + +   + L V+ T++
Sbjct: 123 SPEYTAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ EDV++ AI   H   + +I+ I  +   C K     +S     +L  
Sbjct: 183 KVIMIEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFA 242

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++ +E++  + F  EK  R + I  + +++   F+      +   +       + K
Sbjct: 243 AIREIVPQEEMEEAVFTDEKQKREENIRVITERLEEAFAENEEWLS--VLGEAIYQYEKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQ 360

Query: 362 YVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 361 KLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+D
Sbjct: 421 YAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GIT++QMD+KI G++  I+  A+ + +  RL+IL+E M  
Sbjct: 481 IQGLEDFFGDMDFKVGGTHKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMKP 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++E R ++G++ P++E + I P +I +V+G  GKVI  I+EQTG K++I+DDG V +  
Sbjct: 541 VIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVCG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A I+ A  +IRSI    E  ++  G VV++M+FGAFV     +DG++HIS+LS +RV
Sbjct: 601 TDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           AK  DVV  GD V VK+++ D  G+I LSMK
Sbjct: 661 AKVEDVVNIGDEVTVKVIEVDKMGRINLSMK 691


>gi|295092781|emb|CBK78888.1| polyribonucleotide nucleotidyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 703

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/691 (39%), Positives = 424/691 (61%), Gaps = 9/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A Q++GA    YG+T VL+T       ++G DFFPL+V ++
Sbjct: 3   KSFSMELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP   +M+ ++ A  +S +PF+GP    Q+  I+G++++NP   + +   + L V+ T++
Sbjct: 123 SPEYTAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ EDV++ AI   H   + +I+ I  +   C K     +S     +L  
Sbjct: 183 KVIMIEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFA 242

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++ +E++  + F  EK  R + I  + +++   F+      +   +       + K
Sbjct: 243 AIREIVPQEEMEEAVFTDEKQKREENIRVITERLEEAFAENEEWLS--VLGEAIYQYEKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQ 360

Query: 362 YVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 361 KLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+D
Sbjct: 421 YAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GIT++QMD+KI G++  I+  A+ + +  RL+IL+E M  
Sbjct: 481 IQGLEDFFGDMDFKVGGTYKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMKP 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++E R ++G++ P++E + I P +I +V+G  GKVI  I+EQTG K++I+DDG V +  
Sbjct: 541 VIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVCG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A I+ A  +IRSI    E  ++  G VV++M+FGAFV     +DG++HIS+LS +RV
Sbjct: 601 TDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           AK  DVV  GD V VK+++ D  G+I LSMK
Sbjct: 661 AKVEDVVNIGDEVTVKVIEVDKMGRINLSMK 691


>gi|116515160|ref|YP_802789.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|122285444|sp|Q057K3|PNP_BUCCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116257014|gb|ABJ90696.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 693

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/693 (46%), Positives = 472/693 (68%), Gaps = 3/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + LETG IARQ+  +VLA+  +T VL T+V D +   GQ FFPL 
Sbjct: 1   MLKPIIHKFKYGKHNIILETGVIARQATASVLASMDDTTVLITIVSDNTTIPGQKFFPLV 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPGG+ RRE RP+ENEILISR+IDR IRPLF K +  E Q+I  V+  
Sbjct: 61  VNYQERTYAAGRIPGGFFRREGRPSENEILISRLIDRPIRPLFPKDFLYEVQIIATVISV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179
           + + +P ++S++ +SAAL LSGLPF GP+  A++ ++N +Y+LNP ++   + SLDL VS
Sbjct: 121 NPQINPDIISIIGSSAALCLSGLPFLGPIGAARIGFLNNKYILNPSIEKIKKSSLDLVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           GT++ + MVE EA+ LSED +L+AI+FGH   + +I+ I   +    K P +     K  
Sbjct: 181 GTKNTIFMVEAEASILSEDNILNAILFGHESQQSLIDNIYLFSDKANKIPNIYKNIYKPD 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            ++   +S+ IK+D+  + +I +K  R K+++D+K+K+ S   +  S     +I      
Sbjct: 241 KQIFNLISKKIKKDINKAYYILKKKERLKKLNDIKQKVTSELLNNDSQLTSSKIEESIYF 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  +VR  +L  K+R+DGR +  VR I  + G+L R HGS+LF RG+TQA+V  TLGT 
Sbjct: 301 LERNIVRKRILKGKLRIDGRINNEVRKIDVRTGILPRVHGSALFTRGETQALVSATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L G + ++F+ HYNF P + GE+  +G+P RREIGHG+LA+R+   V+P   
Sbjct: 361 RDAQNLDDLLGDRTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGKLAKRSFLAVMPNIE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   +AGIAMGL+K+ D +IILS
Sbjct: 421 DFPYTIRLVSEITESNGSSSMASVCGASLALMDAGVPIKSAIAGIAMGLIKENDSYIILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+LG MDFKV+G+  GITA+QMD+K+ GI+ +I+  AL QAK  RL IL+ M  
Sbjct: 481 DILGDEDYLGDMDFKVSGSRLGITALQMDIKVSGITSDIIRSALYQAKSARLKILDIMEN 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L   R  + +F PR+  + I P++I++VIG GG +IR + E+TG  + I DDG VKI++
Sbjct: 541 TLQIPRSDISKFAPRIYTIKINPEKIKDVIGKGGSIIRMLTEETGTVIEIKDDGIVKISA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +  + + A + I+ IT+  ++ KIY G+V +++DFGAFV     ++GL+HISQ+S +R+
Sbjct: 601 INGEKAKYAIKRIQEITEDIQIGKIYSGKVTRILDFGAFVSIGFGKEGLIHISQISNKRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  + +K    ++VK+L+ D +G+I+LSMK +
Sbjct: 661 DKVINHLKINQIIFVKVLEVDRQGRIRLSMKNI 693


>gi|291546827|emb|CBL19935.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. SR1/5]
          Length = 697

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/697 (40%), Positives = 425/697 (60%), Gaps = 9/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A+Q++GA L  YG+T VLAT    +  ++G DFFPL+V Y+
Sbjct: 3   KSYSMELAGRTLTVDIGRVAKQANGAALMHYGDTTVLATATASKEPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVDMVMSVDPEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P + +M+ +S A  +S +PF+GP    QV  I+G++++NP L +     L L V+ T++
Sbjct: 123 NPEIPAMLGSSIATCISDIPFDGPCATTQVGMIDGEFIINPTLAQKAVSDLQLTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            V+M+E  AN++ ED +++AI   H   + +I+ I ++   C KE    +S     +L +
Sbjct: 183 KVIMIEAGANEIPEDKMIEAIYKAHEVNQEIIKFIDQIVAECGKEKHSYESCAVPQELFD 242

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E+ +++  E++ V+ F  +K  R   I ++  K+   F+   +      +       Q K
Sbjct: 243 EIKKIVPPEEMEVAVFSDDKQTRENNISEITDKLKEAFA--DNEEWLAVLGEAVYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR+   +R ++A+  ++ R HGS++F RG TQ   V TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGREIRQIRPLAAETDIIPRVHGSAMFTRGQTQICTVTTLAPLTEAQ 360

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 361 RLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+I+L+D
Sbjct: 421 YAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGETDDDYIVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M K
Sbjct: 481 IQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEVMEK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + + R  +GEF P++  + I P +I +V+G  GK I  I+E+TG K++I DDG V I  
Sbjct: 541 CIDKPRTTVGEFAPKIIQIQIDPQKIGDVVGQRGKTINTIIERTGVKIDITDDGAVSICG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A+ MI  IT   E  +I+ G+VV + +FGAF+ F   ++G+VHIS++S +R+
Sbjct: 601 TDQKGMDEAKRMIEIITTEFEAGQIFTGRVVSIKEFGAFLEFAPGKEGMVHISKISKQRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +  DV+  GD V V  L  D  G+I  SMK V +  
Sbjct: 661 NRVEDVLTLGDKVKVICLGKDKMGRISFSMKDVPEEA 697


>gi|282889646|ref|ZP_06298186.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500473|gb|EFB42752.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 694

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/692 (41%), Positives = 433/692 (62%), Gaps = 4/692 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T  ++   + +  ETG+IARQ++GAVL   GET++  T   D  L  G+DF PL V
Sbjct: 1   MERRTTRVKVGEQEIVFETGKIARQANGAVLVRSGETILFNTACADYDLAPGEDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + GK   G+++RE RP+E E L+SR+IDR +RP+F   Y NETQV+  V  +D
Sbjct: 61  DYQEKFSSAGKTVSGFIKREGRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSG 180
             ++P  +++  ASAAL++S +P   PV   +V  I G++V+NP ++ + +  LDL ++G
Sbjct: 121 GVNAPEPLAICGASAALVISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQKKSKLDLILAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DAVLM+E   + L+E+ +L+AI  GH   K + E +    K   K   +   +     
Sbjct: 181 TEDAVLMIEGYCDFLTEEQILEAIEIGHQGIKAICETLLAWQKELGKPKTLHTLRPLPQD 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFED 297
           +   + ++ K  L  +  I EK  R + +  +K  +      E     +   ++ +  ++
Sbjct: 241 VFHSVEEIAKPLLEQALRIKEKQKREEALGAVKSAVQQKLLPEDGEPLFPAKDVATALKE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           + +K +R ++L++ VR DGR S  +R I  + G+L R HGSSLF RG+TQ++ V TLG  
Sbjct: 301 VSSKYMREMILNENVRSDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGGE 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
              Q  + L G     F + Y F P + GEV R+G+P RRE+GHG+LA RA+  +LP   
Sbjct: 361 SMAQRFEDLDGEGSRTFYLQYFFPPFSVGEVGRIGSPGRREVGHGKLAERALQAILPPKE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+ S ITES+GSSSMATVCG  LA+M+AGVP+ +PVAGIAMGL+ + + FIILS
Sbjct: 421 AFPYTIRLESNITESNGSSSMATVCGGCLAMMEAGVPVKRPVAGIAMGLILENERFIILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFK+ G   GITA QMD+K+ GI+ +IM  AL+QAK+GR+HIL +M +
Sbjct: 481 DILGIEDALGDMDFKITGDAEGITAFQMDIKVEGITPSIMKAALEQAKKGRIHILGKMLE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V    + ++  + PR+E M I P +I  VIG GGK IR I+E +G +++I+DDG + IAS
Sbjct: 541 VCPTHKEEMSVYAPRIETMQIKPSKIATVIGPGGKQIRAIIEASGVEIDINDDGLISIAS 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S+L  IE A+ MI  +T   E+ K+Y G++  +  FG FV     ++GL HIS+    R+
Sbjct: 601 SNLEGIEKAKAMIVGLTSDVEIGKVYTGKIANIAPFGIFVEILPGKEGLCHISEFDNTRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              +D VK GD + VK+L+ ++RG++KLS K 
Sbjct: 661 NNLNDYVKIGDMITVKVLEINERGQLKLSRKA 692


>gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 707

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/696 (41%), Positives = 434/696 (62%), Gaps = 9/696 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           ++ ++  + +  ETG++A+ +DG+V  +YGET VL T V    LK+ QDF PL V Y+E+
Sbjct: 5   IKRKFGDQTIVFETGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+ PGGY R+E RPT+ EIL SRMIDR +RPLF K Y  ETQ++  ++  D ++ P
Sbjct: 65  AAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQILGTLLSADGQNDP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            V+++  ASAALM+S +PF GPV   ++  I+G++++NP   E +   +DL   G++   
Sbjct: 125 DVMAINGASAALMVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYVGSEHYP 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLEEEM 244
           LM+E  A +  E+  + A+ F H   + VI A  +LA+   K     +  ++   +   +
Sbjct: 185 LMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQKELAEKVGKPKRSCVLFEENLAITNRL 244

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +++    L+ + +   K  R K++  LK+++ +    E  +    EI S ++ +Q  + R
Sbjct: 245 AELYSSQLQDALYTSSKTERQKKLAKLKEELTAKILEEFPTATPREITSSYDSLQKTIFR 304

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           T +L+ K R DGR  E +R I+ +  ++ R+HGSSLF RG+TQA+ + TL +  + Q +D
Sbjct: 305 TNVLETKRRCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELD 364

Query: 365 S-LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           +   G Q   F++HY F P + GEV R+   SRREIGHG LA R++ PV+P    FPY +
Sbjct: 365 AYGGGEQSKRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDFPYAI 424

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK------DGDDFIILS 477
           R+ SEI ES+GS+SMATVCG SLALMDAGVP+   VAGI++GLVK      D   + +L+
Sbjct: 425 RVSSEILESNGSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEEDFDWSRYCLLT 484

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFK+AGT  GIT  Q+D+K+ GI  ++M  A+ Q+++ R+ IL+ M K
Sbjct: 485 DILGLEDHYGDMDFKIAGTRKGITGFQLDLKLRGIPLDVMAKAIFQSQKARMVILDCMDK 544

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++  R ++ +  PR+E + I PD+I  +IG GGK I+ I  ++GA++ I+DDGTV I S
Sbjct: 545 VINAPRAEISKHAPRIEKIKIHPDKIGLLIGPGGKTIKKISAESGAEITIEDDGTVMIYS 604

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS   +EAAREMI  +     V  IY+ +VV V DFG F+   G  +GLVHIS+LS   V
Sbjct: 605 SSADSLEAAREMIEDMVGEVTVGGIYRSKVVSVKDFGCFIEIKGKGEGLVHISELSDTPV 664

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            +   VV+ G+ +WVK +  D++G+ K S K   + 
Sbjct: 665 RRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKAAMKE 700


>gi|294101702|ref|YP_003553560.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
           colombiense DSM 12261]
 gi|293616682|gb|ADE56836.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
           colombiense DSM 12261]
          Length = 748

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/696 (43%), Positives = 451/696 (64%), Gaps = 7/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                IE  G  +  ETG +A+Q++G+++A  G+TVVL T     + + G DFFPL V++
Sbjct: 2   KKVFSIEIGGHEMTFETGCVAKQANGSIVARSGDTVVLTTTCISDTPRTGIDFFPLLVDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+ GKIPGG+++RE RPTEN IL +R+IDRSIR LF +  + +  V+  V+  D  
Sbjct: 62  EERYYSAGKIPGGFIKREGRPTENAILSARVIDRSIRSLFDENLRYDIHVVATVLSVDQL 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           + P V+++ AAS ALM+S +P+ GP+   ++ YIN Q V+NP  ++  +  LDL VSG +
Sbjct: 122 NPPSVLAINAASVALMISEIPWGGPIGAVRIGYINDQLVVNPLEEQMLESKLDLLVSGHK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
           D + MVE  AN++SE++++DA+   H E K ++    ++ K   KE I I   + F +++
Sbjct: 182 DGITMVEAGANEVSEELLVDALDLAHTEIKKIVAMQEEIRKQIGKEKIDIPEPEFFEEID 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             +   +++ +  +  I EK  R ++I  +K   + +F+  +    E  I +  +++  K
Sbjct: 242 SWLGAEMQKHVLEAVSIHEKKPRAEKIRYVKTTSIEHFAENYPG-TEAYISAAVDEMVKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-DE 360
            +R+ +L+++ R DGR  + +R I+ +VG+L R HGS+LF RG+TQA+VV TLG    D+
Sbjct: 301 TMRSRILNERERADGRAMDEIRPITCEVGVLPRVHGSALFTRGETQALVVATLGMMGVDD 360

Query: 361 QYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L        F++HYNF P + GEV  M  P RREIGHG LA RA+ P++P   +F
Sbjct: 361 QILDGLKQDEPNKRFILHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPIIPDEVEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS+I ES+GSSS A++CG SLALM++GVPI++ VAGIAMGL+K+G+   ILSDI
Sbjct: 421 PYVVRLVSDILESNGSSSQASICGGSLALMNSGVPINRHVAGIAMGLIKEGEKVEILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  G+TA+QMD K GGI+  ++  AL QAK GRL IL +M   +
Sbjct: 481 QGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITREVLKKALNQAKEGRLFILEKMESAI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E    L  + PR+ +  I P++IR++IG GGKVIRGI ++TG K+N++D+G V IA +S
Sbjct: 541 EEPSG-LSPYAPRIYVTHIDPEKIRDIIGPGGKVIRGITQETGVKINVEDNGEVYIAGTS 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              +E A  +I+ +T   E  +IY G+V ++M+FGAF+     ++GL+HIS++S  RV K
Sbjct: 600 SEGVERALAIIKGLTKELEPGEIYLGKVTRIMNFGAFIECLPGKEGLLHISEISPHRVGK 659

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNT 694
             DV   GDTV V + + DD G+  L+ K + DQ  
Sbjct: 660 VEDVFGVGDTVLVMVKEIDDMGRTNLTRKKLYDQEE 695


>gi|295116235|emb|CBL37082.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SM4/1]
          Length = 703

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/691 (39%), Positives = 424/691 (61%), Gaps = 9/691 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A Q++GA    YG+T VL+T       ++G DFFPL+V ++
Sbjct: 3   KSFSMELAGRTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP   +M+ ++ A  +S +PF+GP    Q+  I+G++++NP   + +   + L V+ T++
Sbjct: 123 SPEYTAMLGSAIATCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSDMALTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ EDV++ AI   H   + +I+ I  +   C K     +S     +L  
Sbjct: 183 KVIMIEAGANEVPEDVMIQAIFKAHEVNQEIIKFIDTIVAECGKAKHSYESCAVPEELFA 242

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++ +E++  + F  EK  R + I  + +++   F+   +      +       + K
Sbjct: 243 AIREIVPQEEMEEAVFTDEKQKREENIRVITERLEEAFA--DNEEWLSVLGEAIYQYEKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A++ LL R HGS +F RG TQ + + TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQ 360

Query: 362 YVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 361 KLDGLDENETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+L+D
Sbjct: 421 YAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GIT++QMD+KI G++  I+  A+ + +  RL+IL+E M  
Sbjct: 481 IQGLEDFFGDMDFKVGGTHKGITSIQMDIKIHGLTRPIIEEAIAKTREARLYILDEIMKP 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V++E R ++G++ P++E + I P +I +V+G  GKVI  I+EQTG K++I+DDG V +  
Sbjct: 541 VIAEPRKEVGKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDINDDGNVSVCG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A I+ A  +IRSI    E  ++  G VV++M+FGAFV     +DG++HIS+LS +RV
Sbjct: 601 TDKAMIDKAISIIRSIVTDIEPGQVLTGTVVRIMNFGAFVELAPNKDGMIHISKLSDKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           AK  DVV  GD V VK+++ D  G+I LSMK
Sbjct: 661 AKVEDVVNIGDEVTVKVIEVDKMGRINLSMK 691


>gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076]
          Length = 701

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/697 (44%), Positives = 444/697 (63%), Gaps = 10/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H VE++   R + LETG++A+Q++GAV+   G+ VVL T       K    FFPLTV+Y+
Sbjct: 3   HIVEVDLGDRKITLETGKMAKQANGAVVVRSGDAVVLVTACMADQPKPSAGFFPLTVDYR 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E TYA GKIPGG+++RE R +E E+L  R+IDR IRPLF + + NETQ+I  V+  D E 
Sbjct: 63  EYTYAAGKIPGGFIKREGRLSEKEVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADPEQ 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P+ +++V  +AAL +S +PF+  + G +V   +GQY  NP   E + S L++ V+GT++
Sbjct: 123 DPNSLAIVGTAAALAISDIPFQYVMAGVRVGMRDGQYTANPTYTEGRASKLNIVVAGTEE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            ++MVE  A ++SE  VL AI FGH  CK +   I +L K+C K      S    + +  
Sbjct: 183 GIVMVEAGAQEVSEAEVLGAIEFGHECCKKIAAGIRQLMKLCGKTKREFVSPVLDETIYA 242

Query: 243 EMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E+ +  + DL  +      EK      +  +KK+ +     E            F+ ++ 
Sbjct: 243 EVEKQARVDLTDALNTEKHEKLASYALVASVKKRTIEALPDEQKEQGAK----CFDALKE 298

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++ R  ML K  R DGR+ + +R I+ + G+L R HGS+LF RG+TQA+V VTLGT++DE
Sbjct: 299 RIFRDDMLKKHRRPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDE 358

Query: 361 QYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q ++ L  G     FM+HYNF P + GEV  M    RREIGHG LA RA+  ++P   +F
Sbjct: 359 QRIELLEPGEASKRFMLHYNFPPFSVGEVGFMRGAGRREIGHGALAERALTALIPGEDKF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VS+  ES+GSSSMA +CG SLALM AGVP++  V G+AMGLV +G D+ IL+DI
Sbjct: 419 PYTMRVVSDTLESNGSSSMAAICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAILTDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G EDH G MDFKVAGT  GIT MQMD+K+  I+  IM  AL+QA+RGRL IL++M + +
Sbjct: 479 AGAEDHYGDMDFKVAGTRDGITGMQMDIKVPNITTAIMKEALEQARRGRLFILDKMYEAM 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            ++   + ++ PR+  + IP D+IR+VIG GGKVIRGI+EQTG K++++DDGT+ +AS+ 
Sbjct: 539 PQANTAISQYAPRIYTLHIPTDKIRDVIGPGGKVIRGIIEQTGVKIDVEDDGTIHVASAD 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            A    A ++I  +T   E+ K Y G+VV+++DFGAFV      DGL+HIS+++  R+  
Sbjct: 599 EASANKAIQIISDLTATAEIGKTYLGKVVRLVDFGAFVEIFPGTDGLLHISEIAENRIKD 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             D +KEGD + VK L   +  KIKLS K V +   +
Sbjct: 659 VRDELKEGDQILVKCLAL-EGNKIKLSRKAVLKEQRE 694


>gi|313888270|ref|ZP_07821941.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845673|gb|EFR33063.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 703

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/696 (40%), Positives = 445/696 (63%), Gaps = 4/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  ++ AG  LK+  G++A Q++GA L  YG+TVVL T       ++G DFFPL+V+Y+
Sbjct: 3   KTYTMDLAGSQLKVTIGKVAEQANGACLVQYGDTVVLVTATSSSKPREGIDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y+N+  ++  V+  D + 
Sbjct: 63  EKMYAVGKIPGGFIKREGRPSEKATLSARLIDRPLRPLFPEGYRNDVHIVATVLSVDQDH 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
           SP +V+M+ +S AL +S +PF+GP    +V YI+G+Y++NP  ++   S ++L ++GT+ 
Sbjct: 123 SPEIVAMIGSSIALSISDIPFDGPTGSVEVGYIDGKYIINPNEEQRNNSRINLSLAGTKT 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
           A++MVE  A ++SE  +L+AI+ GH   K + + + ++AK   K+    +  K   ++  
Sbjct: 183 AIMMVEAGAQEVSEAEMLEAILEGHEVIKEICDFVDEIAKEIGKDKAEYEVFKADEEIVA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ +  ++ L  +    +K VR    +  K+ +  +F  +    +  +I S  ++I+   
Sbjct: 243 KVKEFGQDLLVNAIREKDKVVREANTEKAKEAIKEHF-EDLIEEHAKDISSAIDEIEVNE 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R  +++++ R D R    +R +S++VG+L RTHGS LF RG TQ + + TLG   +EQ 
Sbjct: 302 IRRGIIEEERRPDDRKLTEIRHLSSEVGVLPRTHGSGLFTRGQTQVLSIATLGAISEEQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   ++ HYNF     G+     +P RREIGHG LA RA+ PV+P + +FPYT
Sbjct: 362 IDGLGDDKPKRYIHHYNFPGFCVGDTKPSRSPGRREIGHGALAERALIPVIPDSEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GSSS A++CGS+LALMDAGVPI  PVAGIAMGL+++     IL+DI G 
Sbjct: 422 IRVVSEVLSSNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLIEEDGVIKILTDIQGL 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA+QMD+K+ GI + I+  AL++AK  R  IL+ ++  + + 
Sbjct: 482 EDHFGDMDFKVAGTRKGITAIQMDIKVEGIKKEILETALERAKDARFEILDHIATTIEKP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L ++ P + ++ I P++I  VIG GGK+I  I+EQTG K++IDDDG + I S +  +
Sbjct: 542 REELSKYAPIIHMITIDPERIGEVIGAGGKIINKIIEQTGVKIDIDDDGKISILSDNDEK 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I  I    EV ++Y G+V K++ FGAFV      +GL+HIS+++ ER     D
Sbjct: 602 AKEAIAIIEDIVKEIEVGEVYLGKVKKIVKFGAFVELKKGTEGLLHISEIAHERTNNVED 661

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKP 697
           V+K GD++ VK++D   D GKI LS K + +    P
Sbjct: 662 VLKVGDSIEVKVIDIAKDTGKISLSRKALIEREDNP 697


>gi|291562544|emb|CBL41360.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SS3/4]
          Length = 739

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/698 (40%), Positives = 422/698 (60%), Gaps = 11/698 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  +E AGR L +E GR+A+Q++GA    YG+TVVL+T       +DG DFFPL+
Sbjct: 1   MF--KSFSMELAGRTLTVEVGRVAKQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ Y+VGKIPGG+ +RE + +EN  L SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKLYSVGKIPGGFTKREGKASENATLTSRVIDRPMRPLFPKDYRNDVTLDNIVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D E SP + +M+ ++ A  +S +PF+GP    QV  I+G++++NP   + +   L L V+
Sbjct: 119 DPECSPELTAMLGSAIATCISDIPFDGPCAMTQVGLIDGEFIINPTSTQKKVSDLALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T++ V+M+E  A ++ E  +++AI   H   + +I+ I ++   C KE    +S     
Sbjct: 179 STREKVIMIEAGAKEVPEQTMINAIFKAHEVNQEIIKFIDRIVAECGKEKHTYESCAIPD 238

Query: 239 KLEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L   + +++   ++  + F  EK  R + I  + +++   F+   +      I      
Sbjct: 239 ELFAAIKEIVPPAEMEEAVFTDEKQKREENIRQITERLEEAFAE--NEEWLPLIGQAVYQ 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR  + +R ++A++ +L R HGS +F RG TQ +   TL   
Sbjct: 297 YQKKTVRKMILKDHKRPDGRRIDEIRPLAAEIDILPRVHGSGMFTRGQTQILNACTLAPL 356

Query: 358 EDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 357 SEAQRLDGLDENETTKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALVPVLPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            +FPY +R VSE  ES+GS+S A++C S+L+LM AGVPI   VAGI+ GLV     DD+I
Sbjct: 417 EEFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKTMVAGISCGLVTGETDDDYI 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN- 533
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++ +  RL+I++ 
Sbjct: 477 VLTDIQGLEDFFGDMDFKVGGTHEGITAIQMDIKIHGLTRPIIEEAIRRCREARLYIMDN 536

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M+ V+SE R  L ++ P++  + I P +I +V+G  GKVI  I+E+TG K++I DDG V
Sbjct: 537 IMAPVISEPRKTLSKYAPKITQITIDPAKIGDVVGKQGKVINKIIEETGVKIDITDDGAV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +  +    I+ A   IR+I    E   IY G+VV++M+FGAFV     +DG+VHIS+LS
Sbjct: 597 NVCGTDQEMIDKAIATIRNIVTDVEPGMIYTGKVVRIMEFGAFVELAPNKDGMVHISKLS 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            +RVAK  DVV  GD V V++++ D  G+I L+M+  D
Sbjct: 657 DKRVAKVEDVVNIGDEVTVRVVEVDRMGRINLTMRPED 694


>gi|225388763|ref|ZP_03758487.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
           DSM 15981]
 gi|225045170|gb|EEG55416.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
           DSM 15981]
          Length = 702

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/707 (40%), Positives = 422/707 (59%), Gaps = 17/707 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  ++ AGR L +E GR+A Q++GAV   YG+TVVL+T       ++G DFFPL+
Sbjct: 1   MF--KSYSMDLAGRKLTVEVGRVAAQANGAVFMHYGDTVVLSTATASTKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V ++E+ YAVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEFEEKLYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNIVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D   SP + +M+ ++ A  +S +PF GP    QV  I+G++++NP  D+     L L V+
Sbjct: 119 DPNCSPELTAMLGSAIATSISDIPFAGPCATTQVGMIDGEFIINPTADQKHVSDLALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ V+M+E  AN++ ED +++AI       K +I  I  +   C KE    +S     
Sbjct: 179 STREKVIMIEAGANEVPEDKMIEAIFKADQVNKEIIAFIDTIVAECGKEKHTYES---CA 235

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + EE+   IKE     ++  + F  +K  R   I  + +++   F+   +    G I   
Sbjct: 236 IPEELFAAIKELVPPAEMEEAVFTDDKQTREGNIRAISERLEEAFAE--NEEWLGLIDEA 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L    R DGR    +R ++A+V LL R HGS +F RG TQ +   TL
Sbjct: 294 VYQYQKKTVRKMILKDHKRPDGRAVTEIRRLAAEVDLLPRVHGSGMFTRGQTQILNACTL 353

Query: 355 GTREDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 354 APLSEAQRLDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALVPVL 413

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P   +FPY +R VSE  ES+GS+S A++C S+L+LM AGVPI   VAGI+ GLV     D
Sbjct: 414 PSEEEFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKDMVAGISCGLVTGETDD 473

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+++L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + +  R+HI
Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVAGTKKGITAIQMDIKIHGLTRPIIEEAISRTREARIHI 533

Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L++ M  V+SE R  L  + P++  + I P +I +V+G  GKVI  I+E+TG K++I+DD
Sbjct: 534 LDDVMRPVISEPRKHLSPYAPKIIQINIDPQKIGDVVGKQGKVINKIIEETGVKIDINDD 593

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G+V +  +  A I  A ++I+SI    E   I+ G+VV++M+FGAFV     +DG++HIS
Sbjct: 594 GSVNVCGTDEAMINRAVQIIKSIVTEIEPGMIFTGKVVRLMNFGAFVELAPGKDGMIHIS 653

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +LS +RV    DVV  GD V VK+++ D  G+I LSMK  D    K 
Sbjct: 654 KLSEKRVNTVEDVVNIGDEVTVKVIEVDKMGRINLSMKPSDLAPKKE 700


>gi|323483661|ref|ZP_08089044.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
           WAL-14163]
 gi|323402997|gb|EGA95312.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
           WAL-14163]
          Length = 707

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/700 (40%), Positives = 421/700 (60%), Gaps = 15/700 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E  GR L ++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V ++
Sbjct: 3   KSFSMELGGRTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  EKLYAVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP   +M+ A+ A  +S +PF+GP    Q+  I+G++++NP   + +   L L V+ T++
Sbjct: 123 SPEYTAMLGAAIATCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSDLALTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E  AN++ ED+VL AI   H+  + +I+ I  +   C K     +S     + EE
Sbjct: 183 KVIMIEAGANEVPEDIVLQAIFKAHDINQEIIKFIDTIVAECGKPKHTYES---CAVPEE 239

Query: 244 MSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   IKE     ++  + F  EK  R + I  +  ++   F+   +      +       
Sbjct: 240 LFAAIKEIVPPAEMEEAVFTDEKQKREENIKAITARLEEAFA--DNEEWLAVLGEAVYQY 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR    +R ++A++ +L R HGS +F RG TQ + + TL    
Sbjct: 298 QKKTVRKMILKDHKRPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLS 357

Query: 359 DEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L    +   +M HYNF   + GE      P RREIGHG LA RA+ PVLP   
Sbjct: 358 EAQKLDGLDENEKSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSEE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+
Sbjct: 418 EFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R+HIL++ 
Sbjct: 478 LTDIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M  V++E R +L ++ P++E + I P +I +V+G  GKVI  I+EQTG K++IDD GTV 
Sbjct: 538 MKPVIAEPRKELSKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDIDDTGTVA 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    I+ A  +I+SI    E  ++  G VV++M+FGAFV     +DG+VHIS+LS 
Sbjct: 598 VCGTDKEMIDKALHIIKSIVTDIEPGQVMTGTVVRIMNFGAFVELAPNKDGMVHISKLSD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +RV K  DVV  GD V VK+++ D  G+I LSMK  D N 
Sbjct: 658 KRVGKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLNP 697


>gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 806

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/695 (46%), Positives = 460/695 (66%), Gaps = 7/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M    TVE+   G+ L  ETGR+A+Q+ GA L T GE+VVLAT V     K+G DFFPLT
Sbjct: 1   MKQDVTVELT-GGKKLHFETGRMAKQASGAALVTQGESVVLATAVAAPDPKEGIDFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E  YA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQVI  V   
Sbjct: 60  VDYREYAYAGGRIPGGFIKREGRPSEREILTSRQIDRPIRPLFPEGFRNETQVIALVFSA 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D E+ P +V + AASAAL LS +PF GPV   +V Y+NG+YV+NP   E +  S+++ V 
Sbjct: 120 DKENDPDIVGINAASAALALSDIPFAGPVGAVRVGYVNGEYVINPSYAERRDSSINITVV 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT D ++M+E  + ++ E+VVL AI FGH E K ++ AI++LA    K    + + +F +
Sbjct: 180 GTMDGIVMIESGSAEVPEEVVLGAIDFGHTEIKKIVAAINELAAKAGKTKRAVTAPEFDE 239

Query: 240 -LEEEMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVF 295
              E +   I   L  +       K      +  +K ++ +   + E++   + ++   +
Sbjct: 240 AYFETLKNKIGARLADALDTKAHPKTESYALVKQIKDELAAEIPADENAGAAKKKLAHYY 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ K+ R  +   +VR D R  + +R I+ +VG+L RTHGS+LF RG+TQA+V  TLG
Sbjct: 300 ELLREKIFREQVTKDRVRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T +D Q +++  G Q+  FM+HYNF P + GEV RM    RRE+GHG LA RAI  VLP 
Sbjct: 360 TNDDSQRLETFEGEQKKRFMLHYNFPPFSVGEVGRMTGVGRREVGHGALAERAISAVLPG 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             + PY LR+VS+I ES+GSSSMA+VCG+SLALMDAG+P+   VAG+AMGLVK+GD++ I
Sbjct: 420 EDESPYALRVVSDILESNGSSSMASVCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI+G EDH G MDFKVAGT  GITA+QMD+KI GI+  IM  A++QA+RGR+ +L++M
Sbjct: 480 LTDIAGAEDHYGDMDFKVAGTRKGITALQMDIKISGITGQIMREAMEQARRGRMFLLDKM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            ++L+  R +  +  P++  + IP D+IR++IG GGK IRGI+E T  K+++DD G V I
Sbjct: 540 DEILAAPREEKSKHAPQIRTVQIPTDKIRDLIGPGGKTIRGIIEATQVKIDVDDTGRVNI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           ASS    ++ A  MI  +T VPEV K Y G+VV++ +FGAFV      DGL+HIS+++  
Sbjct: 600 ASSDEEGLKKALAMINDLTAVPEVGKTYLGKVVRLAEFGAFVEIFPGTDGLLHISEIAEH 659

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV +  D + EGD V VK+L   +  +IKLS K V
Sbjct: 660 RVKEVKDELHEGDQVMVKVLGV-EGNRIKLSRKAV 693


>gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 749

 Score =  740 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/700 (42%), Positives = 444/700 (63%), Gaps = 8/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M D++ V I      L  ETG++A+Q++G+V A  G+TV+L T       ++G DFFPL 
Sbjct: 1   MQDIYRVRI--GEEELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLL 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+++ER Y+ GKIPGG+++RE RP++  IL +R+IDRSIR LF    +++  V+  V+  
Sbjct: 59  VDFEERFYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D  + P+++++ AASAAL +S +P+ GPV   ++ YI+G  V+NP  +  +  SL+L VS
Sbjct: 119 DQHNPPNILAINAASAALTISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSLELVVS 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           G  D + MVE  A ++ ED+++DA+     E K +++   ++ +   K+ IVID      
Sbjct: 179 GHSDGITMVEAGAQEVPEDLLVDAMELAQGEIKRIVDLQLRMREEIGKDKIVIDPPVRVP 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  +   +K D+  +  I +K  R   I  L+ +   +F+ E      G I    E  
Sbjct: 239 EIDCWVETNLKSDIAEAVMIHDKKQRGAAIRALEDRAREHFAEEFPD-KGGYISGAVEHW 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR- 357
              ++R + + +K R DGR ++ +R +S +V +L + HGS++F RG+TQ++   TLG   
Sbjct: 298 VKAMMRKITVTEKRRADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLG 357

Query: 358 EDEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ED+Q +D L        F++HYNF P + GEV  M  P RREIGHG LA RA+ P++P  
Sbjct: 358 EDDQLIDGLKHNEPNKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALTPIIPDD 417

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+VS+I ES+GSSS A++CG SLALM AGVPI + VAGIAMGL+K+GDD ++L
Sbjct: 418 TEFPYVVRVVSDILESNGSSSQASICGGSLALMSAGVPIKRHVAGIAMGLIKEGDDVVVL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  G+TA+QMD K GGI+  I+  AL QAK  R+ IL+ M 
Sbjct: 478 TDIQGLEDHYGDMDFKVAGTREGVTALQMDNKAGGITREILKQALGQAKDARMAILDVME 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +S     L    PR+  M I  D+IR+VIG GGKVIRGI ++TGAKVNIDDDG + IA
Sbjct: 538 QAISNP-GDLSPNAPRMYTMMINVDKIRDVIGPGGKVIRGITQETGAKVNIDDDGQILIA 596

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +S  E+ AA +MI  I    +  ++++G+V ++M FGAFV     ++GL+H+S++ST R
Sbjct: 597 GASQEEVNAAIKMIDDIVREVQAGEVFQGKVTRLMAFGAFVEVLPGKEGLLHVSEISTHR 656

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V K  DV K GD V V + + DD G+I L+ K +  +  K
Sbjct: 657 VGKVEDVFKPGDPVLVMVREIDDMGRINLTRKKILADEAK 696


>gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 745

 Score =  740 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/705 (42%), Positives = 441/705 (62%), Gaps = 9/705 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   +    AG  ++LETGR A Q+DGAVL   G+TVVL T V    L + + FFPLT 
Sbjct: 5   FEPIRISTNVAGIDIELETGRFANQADGAVLVRSGDTVVLVTAVTQA-LPEDKGFFPLTC 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           NYQE +YA G+IPGGY RRE  RP++ E L+SR+IDR +RP F K +++E Q+I  V+  
Sbjct: 64  NYQEMSYAAGRIPGGYFRREIGRPSDRETLVSRLIDRPLRPSFPKGFRDEVQIIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFV 178
           D   +P V+++  ASAAL +S +PF GP+   +V Y+NG +V  P      +  SL++ +
Sbjct: 124 DKNVNPDVLAVTGASAALHISKIPFNGPLASTRVGYVNGGFVAFPTYQNITELSSLNMVL 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           + +++AV+MVE  A  +SED++ +AI FGH    P+ +   +L +   +  I      + 
Sbjct: 184 AASRNAVVMVEGGAEFMSEDLLAEAIAFGHKMIIPLFDLQDELREKIGRPKIAFTPPAEK 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSV 294
           ++    + ++ K     +  I  K  R K   ++K +++   S    E++   + ++   
Sbjct: 244 TEFMNIVRELGKAKFDAALSIAAKLERKKARSEVKDEVLRILSERDPENADKIKKDLPEA 303

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E ++ +++R  +  + VR+DGRD  TVR +S +VGLL +THGS+LF RG+T ++ + TL
Sbjct: 304 MEALEKEIMRERIKSRGVRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAIATL 363

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+  DEQ +++L+G     FM+HYNF P    E   +  PSRREIGHG LA RAI PVLP
Sbjct: 364 GSSRDEQRIETLTGEITKGFMLHYNFPPFCVNEARFLRGPSRREIGHGNLAERAIKPVLP 423

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FP+T+R+V+E  ES+GSSSMA VCG  LALMDAGVPI  PVAGIAMGL K  DD+ 
Sbjct: 424 ADGEFPFTIRVVAETMESNGSSSMAAVCGGCLALMDAGVPIKAPVAGIAMGLAKVDDDYF 483

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDED +G MDFKVAGT  G+TA+QMD+KI GI + ++  AL QAK  R+ IL E
Sbjct: 484 VLTDILGDEDAMGDMDFKVAGTAEGVTAIQMDIKIAGIPQEVLARALAQAKEARMLILEE 543

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K+L   R  L E  P+ +++ I P++IR VIG GGK I+ I   TGA ++I+D G ++
Sbjct: 544 MAKILPAPRTDLSELAPQYDVVQINPEKIREVIGPGGKNIKAITAATGADIDIEDSGRIQ 603

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I + +   +  AREM+      P+V K Y G V K++D GA V      +GL+H+SQL  
Sbjct: 604 IFAPTSESMVKAREMVLYYDQTPDVGKNYVGTVTKIIDCGAIVQIMPGVEGLLHVSQLDV 663

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGKPI 698
           +RV   +D++  G  V VK+++    G+++LS K  + +  G+ +
Sbjct: 664 DRVENVADLLSTGQEVTVKVVEVQPNGRVRLSRKAWLMEQAGQEV 708


>gi|168180709|ref|ZP_02615373.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           NCTC 2916]
 gi|226949765|ref|YP_002804856.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           A2 str. Kyoto]
 gi|254782713|sp|C1FS53|PNP_CLOBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182668424|gb|EDT80403.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           NCTC 2916]
 gi|226842894|gb|ACO85560.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A2
           str. Kyoto]
          Length = 702

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/691 (40%), Positives = 437/691 (63%), Gaps = 6/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+E   AGR +K++ G+    S+ A+  +YG+TVV+      ++ ++G DFFPL+V+Y
Sbjct: 2   IHTLETTVAGRKMKVDFGKTGMLSNAAIFMSYGDTVVMINANASKAPREGIDFFPLSVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+VGKIPGG+++RE +P++  IL +R IDR +RPLF K Y+N+ Q++  V+  + +
Sbjct: 62  EERLYSVGKIPGGFIKREGKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
           + P ++++  +S AL LS +PF  PV    V  ++G++++NP + + + + LDL V  T+
Sbjct: 122 NLPEILAINGSSLALCLSSIPFTTPVAAVSVGLVDGEFIINPTVAQRENTILDLTVCATK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLE 241
           + V+MVE    ++ E+ +  AI+FG  ECK ++    +      K     I  K   ++E
Sbjct: 182 ERVMMVEAGGQEIDEETMYSAIMFGFQECKNIVAFQEEAVAKFGKTKNEPILYKADEEVE 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +E+ +   + ++   +I +K  R  Q+D +K+K+   FS ++    + +I  V    Q +
Sbjct: 242 KEVKEFAFDMIKEVMYIMDKDERNAQLDKVKEKISEEFSEKYED-KKADIAEVIYKTQKE 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR ++L++  R DGR  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   D Q
Sbjct: 301 VVRNMLLNENRRPDGRSFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQ 360

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D ++      +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +FPY
Sbjct: 361 ILDGIAEEASKRYMHHYNFPSYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEEEFPY 420

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     +++DI
Sbjct: 421 TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLEKEKVITDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED  G MDFKVAGT+ GIT++Q D KI G+S+N +  AL+ AK+ RLHIL ++ + +
Sbjct: 481 QGIEDFFGDMDFKVAGTEKGITSIQFDTKIAGLSDNCVRDALEGAKKARLHILGKIKECI 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV-KIASS 598
            E R +L ++ PR EI+ I P++IR+VIG GGK+I  I+  T  K+ I +DG +   +++
Sbjct: 541 PEPRKELSKYAPRTEIICIDPEKIRDVIGAGGKIINKIIADTNVKIEIKEDGKIFVTSNN 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++ A  +I  +T      +IY G+V K  +FGAFV     ++GLVHIS+L   RV 
Sbjct: 601 EPEGVKKAISIIEGLTKEVVQGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFARVE 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD + VK+ D D++G+I LS K 
Sbjct: 661 KVEDVVSVGDEILVKVTDIDNQGRINLSRKD 691


>gi|323692624|ref|ZP_08106856.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323503321|gb|EGB19151.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 707

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/700 (40%), Positives = 422/700 (60%), Gaps = 15/700 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E  GR L ++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V ++
Sbjct: 3   KSFSMELGGRTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  EKLYAVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP   +M+ A+ A  +S +PF+GP    Q+  I+G++++NP   + +   L L V+ T++
Sbjct: 123 SPEYTAMLGAAIATCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSDLALTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E  AN++ ED+VL AI   H+  + +I+ I  +   C K     +S     + EE
Sbjct: 183 KVIMIEAGANEVPEDIVLQAIFKAHDINQEIIKFIDTIVAECGKPKHTYES---CAVPEE 239

Query: 244 MSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   IKE     ++  + F  EK  R + I  +  ++   F+   +      +       
Sbjct: 240 LFAAIKEIVPPAEMEEAVFTDEKQKREENIKAITARLEEAFA--DNEEWLAVLGEAVYQY 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR    +R ++A++ +L R HGS +F RG TQ + + TL    
Sbjct: 298 QKKTVRKMILKDHKRPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLS 357

Query: 359 DEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L    +   +M HYNF   + GE      P RREIGHG LA RA+ PVLP+  
Sbjct: 358 EAQKLDGLDENEKSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPREE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+S A++C S+L+LM AGVPI  PVAGI+ GLV     DD+I+
Sbjct: 418 EFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKAPVAGISCGLVTGDTDDDYIV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R+HIL++ 
Sbjct: 478 LTDIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIAKTREARIHILDDV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M  V++E R +L ++ P++E + I P +I +V+G  GKVI  I+EQTG K++IDD GTV 
Sbjct: 538 MKPVIAEPRKELSKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEQTGVKIDIDDTGTVA 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    I+ A  +I+SI    E  ++  G VV++M+FGAFV     +DG+VHIS+LS 
Sbjct: 598 VCGTDKEMIDKALHIIKSIVTDIEPGQVMTGTVVRIMNFGAFVELAPNKDGMVHISKLSD 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +RV K  DVV  GD V VK+++ D  G+I LSMK  D N 
Sbjct: 658 KRVGKVEDVVNIGDEVTVKVIEVDKMGRINLSMKPGDLNP 697


>gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 702

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/692 (42%), Positives = 443/692 (64%), Gaps = 4/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   +  + +  G  L +  G++A Q++G  L   G+T++L T V     ++G DFFPL 
Sbjct: 1   MEKTYEYKSQ-NGSDLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLI 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            +YQE+ YAVGKIPGG+++RE + ++  ILISR +DR +RPLF + + N+ QVI      
Sbjct: 60  CDYQEKLYAVGKIPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P  ++ + AS AL +S +PF GPV    V Y++G++++NP  D+ ++ SLDL V+
Sbjct: 120 DEDNEPDCMTTIGASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DA+ MVE  AN+LSED +L+A++  H E K +   I  +     KE + +  +  ++
Sbjct: 180 GTADAINMVEAGANELSEDEMLEAMMVAHAEIKEICSFIQTIIDDIGKEKMEVAEEVETE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++     ED++ S    +K  R   I+ +++K    F  E    +E EI    + I 
Sbjct: 240 LQRKIKDKYTEDIKNSIRTTDKVQREDDINAIEEKCREDFLEEFPE-SEDEIHKTVDSIM 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++   K+R DGR  + +R +SA+ GLL R HGS LF RG TQ + V+TLG+  +
Sbjct: 299 KKEVRRMISIDKIRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGE 358

Query: 360 EQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           EQ +DS++  +    ++  YNF P   G++  +  P RRE+GHG LA RA+ PVLP T  
Sbjct: 359 EQVIDSMNREEITKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTKD 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+  S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+D
Sbjct: 419 FPYTIRVVSEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT  GITA+QMDMKI GI++ ++  AL  A   RL IL+ ++  
Sbjct: 479 IQGLEDHLGDMDFKVAGTKDGITALQMDMKISGINKEVLQEALADAHEARLKILDVITSA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R  L ++ PR+  + + P+++R+VIG GGK I  I+++TG K+  +DDG + +AS+
Sbjct: 539 IDKPREDLSKYAPRIFSIDVDPEKVRDVIGAGGKTINKIIDETGVKIETEDDGHITVASN 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A EMI+SI   P+   IY+G+V ++M+FGAFV     ++GL+HISQ+ T+R  
Sbjct: 599 DGDSGKKAIEMIKSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTE 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DV+K GD V VK+ + D +G+I LS K +
Sbjct: 659 KVEDVLKIGDKVRVKVTEIDRQGRINLSRKAL 690


>gi|300854507|ref|YP_003779491.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
           DSM 13528]
 gi|300434622|gb|ADK14389.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
           DSM 13528]
          Length = 717

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/700 (41%), Positives = 445/700 (63%), Gaps = 5/700 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            F    ++   AGR LK++ G+I + S+ A   +YG+TVVL         ++G DFFPL+
Sbjct: 2   FFMSEIIQTTVAGRTLKVDYGKIGKLSNCAFFISYGDTVVLINANASDKPREGVDFFPLS 61

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           + Y+ER Y+VGKIPGG+++RE +P+E  IL +R IDR +RPLF K Y+N+ QV+  V+  
Sbjct: 62  IEYEERLYSVGKIPGGFIKREGKPSEKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSV 121

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D +++P ++++  AS AL +S +PF  PV    V  ++G++V+NP L+E  + SL+L V 
Sbjct: 122 DQDNAPDILAINGASLALCMSSIPFTTPVGAVSVGLVDGKFVINPGLEERSKSSLNLTVC 181

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T + V+MVE   +++ ED + DAI+FG  ECK ++    +      K+    +     +
Sbjct: 182 ATDERVMMVEAGGDEIPEDTMYDAIMFGFEECKKIVAFQKETMNKYGKQKEEPELYKVEE 241

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            +EEE+ +   + ++ + +I ++  R   ++D+ K++   FS ++   N  +I  V   I
Sbjct: 242 SIEEEVRKFAFQKIKDAMYIMDRDERNAALEDVDKELNEQFSEKYPD-NGPDIAEVVYKI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR +ML++  R+DGR  + +R IS +VG+L RTHG+ LF RG TQ + V TLG+  
Sbjct: 301 KKEIVRNMMLNEHRRVDGRAFDEIRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGSLG 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +   +   ++ HYNF   +TGE   +  P RREIGHG LA +A+ P++P   Q
Sbjct: 361 DVQILDGVGSEESKRYIHHYNFPSYSTGETRPLRGPGRREIGHGALAEKALEPLIPSEDQ 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A++CGS+LAL+DAGVPI +P AGIAMGL+   D     I+
Sbjct: 421 FPYTIRLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLITSEDLSKEEIV 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKV GT+ GITA+Q D KI G+SEN +   L +A+  RL IL+++ 
Sbjct: 481 TDIQGIEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSENCIRETLNRARTARLFILDKIH 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K + E+R +L E+ P+   M+IPPD+IR+VIG GGKVI  I+ +TG K++I +DG + + 
Sbjct: 541 KCIPEAREELSEYAPKTYTMSIPPDKIRDVIGAGGKVINKIIAETGVKIDIKEDGKIFVM 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S   +  + A ++I  +T   +  +IY G+V K  +FGAFV     ++GLVHIS+L   R
Sbjct: 601 SEDSSSAKKALKIIEDLTREVKAGEIYLGKVTKTTNFGAFVEILPGKEGLVHISKLDFTR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V K  D+V  GD + VK+ D D++G+I LS K   +++ +
Sbjct: 661 VNKVEDIVSVGDKILVKVTDIDNQGRINLSRKDAIKDSEE 700


>gi|295110267|emb|CBL24220.1| polyribonucleotide nucleotidyltransferase [Ruminococcus obeum
           A2-162]
          Length = 697

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/697 (39%), Positives = 423/697 (60%), Gaps = 9/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A+Q++GA L  YG+T VL+T    +  ++G DFFPL+V Y+
Sbjct: 3   KSYSMELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P + +M+ +S A  +S +PF+GP    QV  I+G++++NP L + +   L L V+ T++
Sbjct: 123 NPEIPAMLGSSIATCISDIPFDGPCATTQVGLIDGEFIINPSLAQKELSDLQLTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ ED +++AI   H+  + +I  I K+   C KE  +  S     +L E
Sbjct: 183 KVIMIEAGANEVPEDTMIEAIYKAHDVNQEIIRFIDKIVAECGKEKHLYASCAVPEELFE 242

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++  E++  + F  +K  R + I ++  ++   F    +      +       Q K
Sbjct: 243 AIKKIVPSEEMEEAVFTDDKQTREENIREITARLQDAFV--DNEEWLAVLGEAVYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   + TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEAQ 360

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 361 RIDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSAEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+I+L+D
Sbjct: 421 YAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGATDDDYIVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M K
Sbjct: 481 IQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVMEK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++  R  + ++ P++  + I P +I +V+G  GK I  I+E+TG +++I D+G V I  
Sbjct: 541 CIAAPRDHVNKYAPKIVQIQIDPQKIGDVVGQRGKTINAIIERTGVQIDITDEGAVSICG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                ++ A++MI++I    E  +I++G VV + +FGAFV F   ++G+VHIS++S  R+
Sbjct: 601 VDQHGMDEAKKMIKTIATDFEAGQIFEGTVVSIKEFGAFVEFAPGKEGMVHISKISDHRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +  DV+  GD V V  L  D  G++  S+K V +  
Sbjct: 661 NRVEDVLTLGDKVKVICLGKDKMGRMSFSIKDVPEEA 697


>gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           aestuarii DSM 271]
 gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris
           aestuarii DSM 271]
          Length = 734

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/722 (43%), Positives = 462/722 (63%), Gaps = 29/722 (4%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFP 58
           MF     EI+   G+ L +ETG++A+Q+DG+ +    +T+VLATVV  ++     Q FFP
Sbjct: 3   MF--IRKEIDLGSGKTLSIETGKMAKQADGSAIVRLNDTMVLATVVSSKTPPSPNQSFFP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           L V Y+E+  A GK PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  +TQ+II+V+
Sbjct: 61  LQVEYREKYSAAGKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQDTQIIISVI 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
             D  +   V+  VAASAA+M+S +PF+  +   +V  +NG+Y++NP ++E +   +D+ 
Sbjct: 121 SSDQINDADVLGGVAASAAIMVSDIPFQNSMSEVRVGRVNGEYIVNPNINELRDSDIDIS 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           + GT++ + M+E E +++SE  +L+AI FGH   K +    +++A    K      +   
Sbjct: 181 IGGTENTICMLEGEMDEISEAEMLEAIRFGHEAIKKICALQNEIAAEVGKTARTFSAAKA 240

Query: 238 SK-LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKK----------------KMVSYF 279
              L + ++++   +L+  +     K  R ++  ++ K                ++++  
Sbjct: 241 PDNLRQSIAEICSNELKELAYMPLCKEERAEKTAEIYKNAKAQTLQRYQQEITPEVIAAE 300

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
             +    NE  I      I+ +V+R ++LD   R+DGR  + VR IS ++GL+ R HGS+
Sbjct: 301 PEKALYLNEQIIGDAIHSIEKQVMREMILDDAKRLDGRRLDEVRPISIELGLIPRAHGSA 360

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQA+V +TLGT++D Q +D+L+      FM+HYNF P + GE  R+G  SRREI
Sbjct: 361 LFTRGETQALVTLTLGTKKDAQMIDTLTDDADKRFMLHYNFPPFSVGETGRVGGTSRREI 420

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RAI  V P  + FPYT+RIVS+I ES+GSSSMA+VCG +LA MD GVP+ KPV
Sbjct: 421 GHGNLAERAIRKVAPAESAFPYTIRIVSDILESNGSSSMASVCGGALAAMDGGVPLRKPV 480

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +GIAMGL+K+GD + +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  
Sbjct: 481 SGIAMGLIKEGDRYAVLSDILGNEDHLGDMDFKVAGTADGITACQMDIKIDGLDYHILEQ 540

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA  GRLHIL++M++ + E R ++G++ P++  + IP D I  VIG GG+ IR I E
Sbjct: 541 ALEQALHGRLHILDKMNEAIQEPRTEIGKYAPKLTTIQIPVDAIGMVIGKGGETIRSITE 600

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVH 638
           +TGA++NI+DDGTV IAS+S     AA E I+ +   PEV  +Y G+V  +  D GAFV 
Sbjct: 601 ETGAEINIEDDGTVTIASASGEGASAALETIKLLISKPEVGTVYSGKVRDIREDLGAFVE 660

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQN 693
           F    DGLVHIS++S ERVAK SD +K GD V VKL+D   D R    +  LS+K + + 
Sbjct: 661 FLPKTDGLVHISEISNERVAKVSDHLKPGDKVKVKLVDVRKDPRTGKTRFALSIKALAEK 720

Query: 694 TG 695
           + 
Sbjct: 721 SA 722


>gi|300813727|ref|ZP_07094047.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512184|gb|EFK39364.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 722

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/695 (42%), Positives = 436/695 (62%), Gaps = 4/695 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               +E AG  LK+  G++A Q++G  L  YG+TVVL T    +  ++G DFFPL+V+Y+
Sbjct: 3   KIYTMELAGTELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y+N+ Q++  V+  D + 
Sbjct: 63  EKMYAVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDH 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P + +M+ +S AL LS +PF+GP    QV  ++G+YV+NP  ++ ++  ++L +SGT  
Sbjct: 123 IPDIPAMIGSSIALCLSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDINLMLSGTSS 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEE 242
           A++MVE  AN +SE+ +L+AI+ GH   K +   I  +     KE    I  K   ++ +
Sbjct: 183 AIMMVEAGANIVSEEQMLNAILTGHEAIKEICHFIDSIVSEIGKEKSKYILFKPDQEIVD 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++     + L  +    +K +R K  D  K ++  +F  +    N  ++ +  E+I+   
Sbjct: 243 KVKDFGTDILVNAIRQKDKVLREKLTDQAKDEIRQHF-EDLMEENSKDVEAAIEEIEVTE 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++++  R DGR  E +R +S++VGLL R HGS LF RG TQ + V  LG   +EQ 
Sbjct: 302 VRRGIIEEDRRPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQT 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   ++ HYNF   + G+     +P RREIGHG LA RA+ PV+P   +FPYT
Sbjct: 362 IDGLGDDKPKHYIHHYNFPGFSVGDTKPSRSPGRREIGHGALAERALIPVIPSIEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GSSS A+VCGS+L+LMDAGVPI  PVAGIAMGL+++     IL+DI G 
Sbjct: 422 IRVVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGVTKILTDIQGL 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA+QMD+K+ GI + I+ +AL++AK  RL IL+ +   + + 
Sbjct: 482 EDHFGDMDFKVAGTSEGITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTTIDKP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L ++ P + I+ I P++I +VIG GGK I  I+EQTG K++IDDDG V + S    +
Sbjct: 542 RDHLSKYAPIIHIILIDPNKIGDVIGAGGKTINKIIEQTGVKIDIDDDGKVSVLSEDAEK 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I SI    EV   Y G+V K+M FGAFV      +GL+HIS+++ ER  +  D
Sbjct: 602 AKEAISIIESIIKEVEVGDEYLGKVKKIMKFGAFVELKKGTEGLLHISEIAHERTREVGD 661

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGK 696
           V+  GD V VK+++  D+ GKI LS KV+     +
Sbjct: 662 VLHVGDQVKVKVIEINDENGKISLSRKVLLPKPKR 696


>gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 702

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/692 (42%), Positives = 442/692 (63%), Gaps = 4/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   +  + +  G  L +  G++A Q++G  L   G+T++L T V     ++G DFFPL 
Sbjct: 1   MEKTYEYKSQ-NGSDLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLI 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            +YQE+ YAVGKIPGG+++RE + ++  ILISR +DR +RPLF + + N+ QVI      
Sbjct: 60  CDYQEKLYAVGKIPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P  ++ + AS AL +S +PF GPV    V Y++G++++NP  D+ ++ SLDL V+
Sbjct: 120 DEDNEPDCMTTIGASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DA+ MVE  AN+LSED +L+A++  H E K +   I  +     KE + +     ++
Sbjct: 180 GTADAINMVEAGANELSEDEMLEAMMVAHAEIKEICSFIQTIIDDIGKEKMEVAEDVETE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++     ED++ S    +K  R   I+ +++K    F  E    +E EI    + I 
Sbjct: 240 LQRKIKDKYTEDIKNSIRTTDKVQREDDINAIEEKCREDFLEEFPE-SEDEIHKTVDSIM 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++   K+R DGR  + +R +SA+ GLL R HGS LF RG TQ + V+TLG+  +
Sbjct: 299 KKEVRRMISIDKIRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGE 358

Query: 360 EQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           EQ +DS++  +    ++  YNF P   G++  +  P RRE+GHG LA RA+ PVLP T  
Sbjct: 359 EQVIDSMNREEITKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTKD 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+  S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+D
Sbjct: 419 FPYTIRVVSEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEEDSISILTD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT  GITA+QMDMKI GI++ ++  AL  A   RL IL+ ++  
Sbjct: 479 IQGLEDHLGDMDFKVAGTKDGITALQMDMKISGINKEVLQEALADAHEARLKILDVITSA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R  L ++ PR+  + + P+++R+VIG GGK I  I+++TG K+  +DDG + +AS+
Sbjct: 539 IDKPREDLSKYAPRIFSIDVDPEKVRDVIGAGGKTINKIIDETGVKIETEDDGHITVASN 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A +MI+SI   P+   IY+G+V ++M+FGAFV     ++GL+HISQ+ T+R  
Sbjct: 599 DGDSGKKAIQMIKSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTE 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DV+K GD V VK+ + D +G+I LS K +
Sbjct: 659 KVEDVLKIGDKVRVKVTEIDRQGRINLSRKAL 690


>gi|322435940|ref|YP_004218152.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX9]
 gi|321163667|gb|ADW69372.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX9]
          Length = 817

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/692 (45%), Positives = 442/692 (63%), Gaps = 7/692 (1%)

Query: 4   VHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
            H V +E   G+ +K ETGR+A+Q+ GA   T G+  +LAT V     K+G DFFPLTV 
Sbjct: 2   KHDVTVELAGGKHIKFETGRMAKQASGAAFTTSGDNAILATAVASPDPKEGIDFFPLTVE 61

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E TYA G+IPGG+++RE RP+E EIL SR IDR IRPLF + ++NETQV+  V   D 
Sbjct: 62  YREFTYAGGRIPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADK 121

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E+ P V+ +  AS AL LS +PF GPV   +V  I G +++NP   E ++  L++ V GT
Sbjct: 122 ENDPDVLGINGASCALALSDIPFHGPVGAVRVGLIEGNFIVNPTYAEREKSELNIMVVGT 181

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            D ++MVE  + + SE+ V+ AI F H E K +  AI +L K+  K    +   +   + 
Sbjct: 182 ADGIVMVESGSKETSEESVVSAIEFAHVEIKKICAAIEELVKLAGKTKRTVTPVEVDQEY 241

Query: 241 EEEMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
              +   + E L  +    +  K+     +  +K ++      E  +    ++   +E +
Sbjct: 242 LGSLKAKVGERLSDALDTQKHPKFESYALVKTIKDELKKDL-PEGDAAAGKKLSKYYELM 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  + R  +L+ ++R D R  + +R ++ + G+L R HGS+LF RG+TQA+V  TLGT +
Sbjct: 301 RESIFRDQVLNDRIRPDHRAFDQIRLVTVETGVLPRVHGSALFTRGETQALVSATLGTTD 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q ++S +G  +  FM+HYNF P + GEV RM    RREIGHG LA RAI  VLP   +
Sbjct: 361 DAQRMESYTGEFKRRFMLHYNFPPFSVGEVGRMTGVGRREIGHGALAWRAIEAVLPGEDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            PYTLR+VS+I ES+GSSSMATVCG+SLALM AG+P+   VAG+AMGLVK+GD + IL+D
Sbjct: 421 SPYTLRVVSDILESNGSSSMATVCGASLALMAAGIPLKGAVAGVAMGLVKEGDKYAILTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+G EDH G MDFKVAGT  GITA+QMD+KI GI+  IM  AL+QA+RGRL +L+ M   
Sbjct: 481 IAGAEDHYGDMDFKVAGTRKGITALQMDIKIMGITPQIMREALEQARRGRLELLDTMDAT 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S +  Q   F PR+  M IP D+IR++IG GGKVIRGI++ TG K+++DD G V +ASS
Sbjct: 541 ISSASEQKSAFAPRIHSMQIPTDKIRDLIGPGGKVIRGIIDATGVKIDVDDTGRVNVASS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               +  A +MI  +T  PE+ K Y G+VV++ +FGAFV      DGL+H+S+++  RV 
Sbjct: 601 DADGLSRAIQMITDLTATPEIGKTYLGRVVRLAEFGAFVEIFPGTDGLLHVSEIAEHRVK 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +  D ++EGD + VK+L   +  +IKLS K V
Sbjct: 661 EVKDELREGDQILVKVLAI-EGNRIKLSRKAV 691


>gi|323144053|ref|ZP_08078697.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
           YIT 12066]
 gi|322416166|gb|EFY06856.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
           YIT 12066]
          Length = 720

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/696 (46%), Positives = 450/696 (64%), Gaps = 5/696 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTV 61
              T   ++    + LETG I RQ+D AV+A+  +T V ATVV +R    +G+DFFPLTV
Sbjct: 4   KPITRTFKYGRHTITLETGAIGRQADSAVMASMDDTTVFATVVCNRREQVEGRDFFPLTV 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQER+YAVG+IP  + RRE R +E E LISR+IDR +RPLF   + NE QV++ VM  +
Sbjct: 64  NYQERSYAVGRIPVSFFRREGRASEGETLISRLIDRPLRPLFPDGFVNEVQVVVTVMSAN 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSG 180
            E    ++S++AASAAL  SGLP+ GP+  A+V YINGQYVLNP   + ++  LDL V+G
Sbjct: 124 PEIPTDIISIIAASAALSTSGLPWNGPLGAARVGYINGQYVLNPLTSETEESDLDLVVAG 183

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           +  AV+MVE EA  L EDV+L A+++GH + + VI  I + AK   +      + +   +
Sbjct: 184 SDKAVVMVESEAKILPEDVMLGAVMYGHEQQQVVINEIKEFAKEVNRPVWDWKAPEPDYE 243

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVSVFED 297
           L   +     E +  +  I +K  R   +  ++ + +    ++   W E   EI  +F D
Sbjct: 244 LINAVKADAAEKVGEAFRIVDKLERQNTLSTIEAETIEKVKAQKEEWAEKDQEIAKIFFD 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++  +VR  +L  + R+DGR    +R I+   G+L R HGS+LF RG+TQAI   TLG+ 
Sbjct: 304 LERDIVRERILSGEKRIDGRTLRMIRPITVASGILPRVHGSALFTRGETQAIATCTLGSE 363

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q  + +SGT+ + F++HYNF P   GE   +G+P RREIGHGRLA+RA+  VLP   
Sbjct: 364 RDAQTFEDMSGTRSDRFILHYNFPPYCVGETGLIGSPKRREIGHGRLAKRALRAVLPDME 423

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSEITES+GSSSMA+VCG SLAL DAGVP    VAGIAMGLVK+GD   +L+
Sbjct: 424 RFPYTIRVVSEITESNGSSSMASVCGGSLALFDAGVPCKAAVAGIAMGLVKEGDRVAVLT 483

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+K  GI+  IM  AL  A   RLH+L  M +
Sbjct: 484 DIMGDEDHLGDMDFKVAGTTEGVTALQMDIKTDGITREIMQQALTDAHAARLHLLKIMGR 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L   R  L  + PR+  + +PPD+++ +IG GG  IR I   T   ++I+DDGTV+I++
Sbjct: 544 ALPNPRQNLSPYAPRIVTIQVPPDKVKEIIGKGGFNIRAIQTATNTSIDIEDDGTVRISA 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++ A  +     I  +    EV +IY+G+VV++ DFGAFV+    RDGLVHISQ+  ERV
Sbjct: 604 NTAAAADQVIARINDLLVEVEVGRIYEGKVVRITDFGAFVNILPGRDGLVHISQIVDERV 663

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              +D ++ GD V VK+LD D+ G+I+LS+K V++ 
Sbjct: 664 DNVNDYLRVGDIVKVKVLDLDNTGRIRLSIKAVNEE 699


>gi|331082947|ref|ZP_08332067.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330399942|gb|EGG79600.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 697

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/697 (39%), Positives = 420/697 (60%), Gaps = 9/697 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A+Q++GA L  YG+T VL+T       ++G DFFPL+V Y+
Sbjct: 3   KSFSMELAGRTLTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P VV+M+ +S A  +S +PF+GP    Q+  +NG+ V+NP L + +   L L V+ T++
Sbjct: 123 NPEVVAMLGSSIATCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISDLQLTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ E  +++AI   H   + +I  I K+   C KE    +S     +L  
Sbjct: 183 KVIMIEAGANEIPEAKMIEAIFKAHEVNQEIIAFIDKIVAECGKEKHSYESCAVPEELFA 242

Query: 243 EMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++  E++  + F  EK VR + I  + +K+   F+   +      +       Q K
Sbjct: 243 AIKEIVTPEEMEEAVFTDEKQVREENIRVITEKLEEAFAE--NEEWLAVLGEAVYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A+  ++ R HGS++F RG TQ   + TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSEAQ 360

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FP
Sbjct: 361 RLDGLDEFEVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+++L+D
Sbjct: 421 YAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGETDDDYLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K  R +IL E M K
Sbjct: 481 IQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVMEK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  + ++ P++  + I P++I +V+G  GK I  I+++TG K++IDD+G V I  
Sbjct: 541 CIPAPRKTVSKYAPKIVQIQIDPEKIGDVVGQRGKTINAIIDETGVKIDIDDNGGVSICG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A E I++IT   +  +I+ G+V+ + +FGAF+ F   ++G+VHIS++S ER+
Sbjct: 601 TDQHMMDKAVEYIKTITTDYQEGQIFTGKVISIKEFGAFLEFAPGKEGMVHISKISKERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            K  DV+  GD V V  L  D  G+I  SMK V +  
Sbjct: 661 EKVEDVLSIGDVVKVVCLGKDKMGRISFSMKDVPEEA 697


>gi|291166373|gb|EFE28419.1| polyribonucleotide nucleotidyltransferase [Filifactor alocis ATCC
           35896]
          Length = 726

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/697 (42%), Positives = 451/697 (64%), Gaps = 4/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E+    R LK+E G++A  ++GA L + G+TVVL T       ++G DFFPL+V+++
Sbjct: 3   KIFEMPLGNRQLKIEIGKVAELANGACLVSCGDTVVLVTATNSALPREGIDFFPLSVDFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE RP+E  IL SR+IDR IRPLF K ++N+ QV+  V+  + + 
Sbjct: 63  ERLYSVGKIPGGFIKREGRPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVEPDV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P V++M+ +S AL +S +PF GP     V  I+GQ +LNP +D+     L L VSGT+D
Sbjct: 123 TPDVLAMIGSSIALSISSIPFNGPTGSVAVGLIDGQLILNPDVDQRAASDLHLTVSGTKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLEE 242
           A++MVE  AN+++E  +L+AI++ H E K ++  I  + +   KE +  +  K   ++E 
Sbjct: 183 AIMMVEAGANEVTERTMLEAILYAHEEIKKIVSFIETIVEEVGKEKMEYVVFKADEQIES 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +  KE ++ +    +K  R + +D  +++++ +F+  +   N  ++      I  + 
Sbjct: 243 HVLEYGKEKMKAAILTKDKTERMENMDKARQEIMEHFAEIYPE-NIKDVEETIYKITKEG 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++L  ++R D R  + +R IS +VG L RTHGS++F RG TQ + V TLG   + Q 
Sbjct: 302 IRELILVDRIRPDNRSMDEIRPISCEVGTLPRTHGSAIFTRGQTQVMSVTTLGALGEMQT 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L       +M HYNF   + GE      P RREIGHG LA RAI P+LP   +F Y 
Sbjct: 362 LDGLDENIEKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERAILPMLPSKEEFAYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GS+S A+VCGS+L+L+DAGVP+ + VAGIAMGL+K+ +   ILSDI G 
Sbjct: 422 IRVVSEVMSSNGSTSQASVCGSTLSLLDAGVPMKRMVAGIAMGLIKEDEHLAILSDIQGM 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED LG MDFKVAGT+ GITA+QMD+KI GI E I+  AL+QA++GRL ILN+M +V+S  
Sbjct: 482 EDFLGDMDFKVAGTEEGITAIQMDIKISGIDEEILTKALEQARQGRLFILNKMREVISSP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++ ++ P V  M I P++IR VIG GGKVI  I+++TGAK++I+ DG + I +    +
Sbjct: 542 RPEISQYAPMVLQMKIDPEKIREVIGTGGKVINKIIDETGAKIDIEQDGNIFILAVERDK 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A++MI  I + PEV KIY+ +V ++MDFGAF  F   ++GL+HISQ   +R    S 
Sbjct: 602 GKLAKQMIEEIVEEPEVGKIYRAKVTRLMDFGAFAEFMPGKEGLIHISQADIQRTDDISS 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ-NTGKPI 698
           +   GD V V L++ DD+G++ LS + V Q + G+PI
Sbjct: 662 LWSVGDEVEVMLMEIDDQGRMNLSRRAVMQRDVGEPI 698


>gi|282882000|ref|ZP_06290641.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|281298030|gb|EFA90485.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
          Length = 722

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/695 (42%), Positives = 436/695 (62%), Gaps = 4/695 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               +E AG  LK+  G++A Q++G  L  YG+TVVL T    +  ++G DFFPL+V+Y+
Sbjct: 3   KIYTMELAGTELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+++RE RP+E   L +R+IDR +RPLF + Y+N+ Q++  V+  D + 
Sbjct: 63  EKMYAVGKIPGGFIKREGRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDH 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P + +M+ +S AL LS +PF+GP    QV  ++G+YV+NP  ++ ++  ++L +SGT  
Sbjct: 123 IPDIPAMIGSSIALCLSDIPFDGPTGSVQVGLVDGEYVINPNQEQREKTDINLMLSGTSS 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEE 242
           A++MVE  AN +SE+ +L+AI+ GH   K +   I  +     KE    I  K   ++ +
Sbjct: 183 AIMMVEAGANIVSEEQMLNAILTGHEAIKEICHFIDSIVSEIGKEKSKYILFKPDQEIVD 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++     + L  +    +K VR K  D  K ++  +F  +    N  ++ +  E+I+   
Sbjct: 243 KVKDFGTDILVNAIRQKDKVVREKLTDQAKDEIRQHF-EDLMEENSKDVEAAIEEIEVTE 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  ++++  R DGR  E +R +S++VGLL R HGS LF RG TQ + V  LG   +EQ 
Sbjct: 302 VRRGIIEEDRRPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQT 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   ++ HYNF   + G+     +P RREIGHG LA RA+ PV+P   +FPYT
Sbjct: 362 IDGLGDDKPKHYIHHYNFPGFSVGDTKPSRSPGRREIGHGALAERALIPVIPSIEEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GSSS A+VCGS+L+LMDAGVPI  PVAGIAMGL+++     IL+DI G 
Sbjct: 422 IRVVSEVLSSNGSSSQASVCGSTLSLMDAGVPIKAPVAGIAMGLIEEHGVTKILTDIQGL 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA+QMD+K+ GI + I+ +AL++AK  RL IL+ +   + + 
Sbjct: 482 EDHFGDMDFKVAGTREGITAIQMDIKVEGIKKEILEVALERAKVARLEILDHLKTTIDKP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  L ++ P + I+ I P++I +VIG GGK I  I+EQTG K++IDDDG V + S    +
Sbjct: 542 RDHLSKYAPIIHIILIDPNKIGDVIGAGGKTINKIIEQTGVKIDIDDDGKVSVLSEDAEK 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I SI    EV   Y G+V K+M FGAFV      +GL+HIS+++ ER  +  D
Sbjct: 602 AKEAISIIESIIKEVEVGDEYLGKVKKIMKFGAFVELKKGTEGLLHISEIAHERTREVGD 661

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGK 696
           V+  GD + VK+++  D+ GKI LS KV+     +
Sbjct: 662 VLHVGDQLKVKVIEINDENGKISLSRKVLLPKPKR 696


>gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
 gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
          Length = 756

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/694 (41%), Positives = 442/694 (63%), Gaps = 6/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  +   G+ L+  TG++A+Q++GA+ A  G+TVVL T       + G DFFPL V+++
Sbjct: 3   KTYSLTVGGQELQFTTGKVAKQANGAIWARVGDTVVLTTACMTDKPRVGLDFFPLLVDFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+ GKIPGG+++RE RP++  IL +R+IDRSIR LF    +++  V+  V+  D ++
Sbjct: 63  ERYYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFEDWMRHDVHVVTTVLSVDQKN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           +P+++++ AASAAL +S +P+ GPV   ++ Y+NGQ V+NP  D+  + SLDL V+G  D
Sbjct: 123 TPNILAINAASAALCISDIPWNGPVGAVRMGYVNGQLVVNPTEDQMPESSLDLTVAGHAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            + MVE  A+++ E +++DA+     E + + +   K+ +        +  ++    +++
Sbjct: 183 GITMVEAGAHEVPEALLIDALGVAQEEIRKICQFQLKMREEIGLPKRELPHTEVIEPIDK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            ++  +++++ V+  I +K  R   I  L  K V +F+ E+   +   I  V E    K 
Sbjct: 243 WVADNLQDEVAVAVMIHDKKERGAAISALVDKAVEHFAVEYPD-SAVYISGVVEGWVKKK 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQ 361
           +R +   +KVR DGR ++ +R IS ++GLL R HGS+LF RG+T ++   TLG   ED+Q
Sbjct: 302 MRYITAHQKVRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLGEDDQ 361

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        F++HYNF P + GEV  M  P RREIGHG LA RA+ P++P    FP
Sbjct: 362 MMDGLKHNEPNKRFLLHYNFPPFSVGEVRPMRGPGRREIGHGALAERALAPIIPSEEDFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VS+I ES+GSSS A++CG SLALM AGVP+   VAGIAMGL+K+GDD +IL+DI 
Sbjct: 422 YVVRVVSDILESNGSSSQASICGGSLALMAAGVPVKCHVAGIAMGLIKEGDDVVILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  G+TA+QMD K GGI++ I+  AL QA++ R+ IL++M   ++
Sbjct: 482 GLEDHYGDMDFKVAGTREGVTALQMDNKAGGITKEILTQALGQARKARMEILDKMEACIA 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
              ++L ++ PR+  M I  ++IR+VIG GGKVIR IV ++GAKVN++DDGT+ I+S+  
Sbjct: 542 AP-VELSQYAPRIFTMQIDVEKIRDVIGTGGKVIRNIVAESGAKVNVEDDGTIYISSTEP 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A +MI  I       + + G+V ++M FGAFV     ++GL+H+S++ST  + K 
Sbjct: 601 EAVKKAEKMITDIVRDVVAGEAFFGRVTRLMSFGAFVEVLPGKEGLLHVSEVSTRHIDKI 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             V   GD V V + + DD+ +I LS + +  + 
Sbjct: 661 ESVFAPGDQVMVMVKEIDDQNRINLSRRRLLADP 694


>gi|239626266|ref|ZP_04669297.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520496|gb|EEQ60362.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 706

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/701 (39%), Positives = 421/701 (60%), Gaps = 17/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  ++ AGR L +E GR+A Q++GA    YG+TVVLAT       ++G DFFPL+
Sbjct: 1   MF--KSFSMDLAGRKLTVEIGRVAAQANGAAFMHYGDTVVLATATASSKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ Y+VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKLYSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ ++ A  +S +PF GP    QV  ++G++V+NP   + Q   + L V+
Sbjct: 119 DPDCSPELTAMLGSAIATSISDIPFAGPCATTQVGLVDGEFVINPTAAQKQVSDMALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ V+M+E  AN++ E  ++DAI   H   + +I  I  +   C KE    +S     
Sbjct: 179 STREKVIMIEAGANEVPEQKMIDAIFKAHEVNQEIIRFIDTIVAECGKEKHSYES---CA 235

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + EE+   I+E     ++  + F  +K  R K I ++  ++   F+   +      +   
Sbjct: 236 VPEELFAAIREIVPPVEMETAVFTDDKQTREKNIAEITARLEEAFAG--NEEWLAVLGEA 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L    R DGR  + +R ++A++ LL R HGS +F RG TQ +   TL
Sbjct: 294 VYQYQKKTVRKMILKDHKRPDGRAIDEIRHLAAEIDLLPRVHGSGMFTRGQTQILNACTL 353

Query: 355 GTREDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 354 APLSEAQRIDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVL 413

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P   +FPY +R VSE  ES+GS+S A++C S+L+LM AGVPI + VAGI+ GLV     D
Sbjct: 414 PSAEEFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKEMVAGISCGLVTGDTDD 473

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+++L+DI G ED  G MDFKV GT +GITA+QMD+KI G++  I+  A+ + +  R+HI
Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVGGTKNGITAIQMDIKIHGLTRPIIEEAITRTREARMHI 533

Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L++ M  V+SE R  L  + P+++ + I P +I +V+G  GKVI  I+E+TG K++I DD
Sbjct: 534 LDDVMKPVISEPRKHLSPYAPKIKQITIDPQKIGDVVGKQGKVINKIIEETGVKIDITDD 593

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G+V +  +  A I+ A  +I  I    E   +++G+VV++M+FGAFV     +DG+VHIS
Sbjct: 594 GSVNVCGTDEAMIDRAITIITGIVTDIEAGMVFEGKVVRIMNFGAFVELAPNKDGMVHIS 653

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +LS +RV K  DVV  GD V VK+ + D  G+I L+M+  D
Sbjct: 654 KLSDKRVGKVEDVVNIGDEVTVKVTEVDKMGRINLTMRPSD 694


>gi|302387373|ref|YP_003823195.1| polyribonucleotide nucleotidyltransferase [Clostridium
           saccharolyticum WM1]
 gi|302198001|gb|ADL05572.1| polyribonucleotide nucleotidyltransferase [Clostridium
           saccharolyticum WM1]
          Length = 709

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/698 (40%), Positives = 436/698 (62%), Gaps = 17/698 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  +E AGR L ++ GR+A+Q++GA    YG+TVVLAT       +DG DFFPL+
Sbjct: 1   MF--KSFSMELAGRTLTVDVGRVAKQANGAAFMHYGDTVVLATATASDKPRDGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ ++ A  +S +PF+GP    Q+  ++G+ V+NP   + Q   + L V+
Sbjct: 119 DQDCSPELTAMLGSAIATCISDIPFDGPCASTQIGLVDGELVVNPTQAQKQVSDMALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDS 234
            T++ V+M+E  AN++ ED +++AI   H   + +I+ I  +   C K         +  
Sbjct: 179 STREKVIMIEAGANEVPEDKMIEAIFKAHEVNQEIIKFIDTIVAECGKPKHGYTSCAVPE 238

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + F+ ++E ++    E++ V+ F  EK VR + I ++  K+   F+ +    +   +   
Sbjct: 239 ELFAAIKEIVTP---EEMEVAVFTDEKQVREENIRNITAKLEEAFADKEEWLS--VLGEA 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L    R DGR  + +R ++A++ +L R HGS++F RG TQ + + TL
Sbjct: 294 IYQYQKKTVRKMILKDHKRPDGRAMDQIRHLAAEIDMLPRVHGSAMFTRGQTQILNICTL 353

Query: 355 GTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D +        +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 354 APLSESQRLDGIDDMETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVL 413

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P   +FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     D
Sbjct: 414 PSEEEFPYAIRTVSETMESNGSTSQASICSSSMSLMAAGVPIKAAVAGISCGLVTGDTDD 473

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+I+L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A++  ++ RL+I
Sbjct: 474 DYIVLTDIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRTTRKARLYI 533

Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L+E M+K ++E R ++G++ P+++ ++I P +I +V+G  GKVI  I+E+TG K++I DD
Sbjct: 534 LDEVMAKAIAEPRKEVGKYAPKIDQISIDPQKIGDVVGKQGKVINKIIEETGVKIDISDD 593

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V +  +    I+ A ++I+SI    E  +I+ G+VV++M+FGAFV     +DG++HIS
Sbjct: 594 GNVSVCGTDQTMIDRAIQIIKSIVTEIEAGQIFTGKVVRIMNFGAFVELAPNKDGMIHIS 653

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +LS +RVAK  DV+  GD V VK+++ D  G+I LSMK
Sbjct: 654 KLSEKRVAKVEDVINIGDEVTVKVIEVDKMGRINLSMK 691


>gi|254416087|ref|ZP_05029842.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
           7420]
 gi|196177020|gb|EDX72029.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
           7420]
          Length = 715

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/694 (43%), Positives = 435/694 (62%), Gaps = 14/694 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L  G +A Q+ G+VL   G+T VL T       ++G DF PL V+Y+ER
Sbjct: 6   KSISFDGRDIRLRAGLLAPQAGGSVLIESGDTAVLVTATRSA-GREGIDFLPLLVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E   L SR+IDR +RPLF    +++ Q++   +  D +  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++ + +PF GP+   +V  +   +++NP   E D G LDL V+G+   V
Sbjct: 125 DVLAVTGASVAVLQAQIPFYGPMAAVRVGLVGDDFIINPTYREIDNGDLDLVVAGSPQGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEM 244
           +MVE  ANQL E  +++AI FG+   + +I A   L K    E I  +  + S +LEE +
Sbjct: 185 IMVEAGANQLPERDIIEAIEFGYEAVQDLIAAQENLLKELGIEIIQAEPPETSSELEEFI 244

Query: 245 SQMIKEDLRVSC--FIPEKYVRCKQIDDLKK-KMVSYFSSEHSS-------WNEGEIVSV 294
                + ++     F  +K+ R + +D++K+ ++++  +             N+  + SV
Sbjct: 245 RDRATKPIKKVLSQFDFDKHDRDEALDEIKENEILAPIAERPEDDPLRVAAANDQLLSSV 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R+ +++  VR+DGR  + VR +S QVGLL  R HGS LF RG TQ +  VT
Sbjct: 305 FKSLTKKLMRSQIVEDGVRVDGRKLDEVRPVSCQVGLLPSRVHGSGLFNRGLTQVLSTVT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L+  +   ++ HYNF P + GE   M +P RREIGHG LA RAI P+L
Sbjct: 365 LGTPGDAQMLDDLNPEEEKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERAIIPIL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+GD+ 
Sbjct: 425 PPQNEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGDEV 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+    +  A++QAK  RLHIL 
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPMETVAKAIEQAKPARLHILE 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   + + R  L  F PR+  M I PD I  VIG GGK I+GI EQTGAKV+IDDDGT+
Sbjct: 545 KMLAAIDKPRPDLSAFAPRLLTMKIDPDLIGLVIGPGGKTIKGITEQTGAKVDIDDDGTI 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +++    + + A  +I+ +T   E   +Y G+V +++  GAFV     ++G++HISQL+
Sbjct: 605 TVSAVEGEKAKKAITLIQGMTRRLEEGDVYAGRVTRIIPIGAFVEVLPGKEGMIHISQLA 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             RV K  D V  GD V VK+ + D++G+I L+ 
Sbjct: 665 DYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTR 698


>gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
           ATCC 43325]
 gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
           ATCC 43325]
          Length = 666

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/646 (49%), Positives = 447/646 (69%), Gaps = 5/646 (0%)

Query: 50  LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN 109
           +K+GQDFFPLTVNYQERTYA G+IPGG+ +RE RP+E E LI+R+IDR IRPLF + + N
Sbjct: 1   MKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYN 60

Query: 110 ETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-D 168
           E Q++  V+  + +  P +V+M+ ASAAL LSG+PF GP+  A+V +I+ Q+VLNP + +
Sbjct: 61  EIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMNE 120

Query: 169 EDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + Q  LDL V+GT  AVLMVE EA+ L+E+ +L A++FGH + + VIEAI +      K 
Sbjct: 121 QKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHEQQQVVIEAIKEFTAQAGKP 180

Query: 229 PIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HS 284
                + + +  L E++  + +  L  +  I EK  R +QID +K  +++  ++E     
Sbjct: 181 RWDWVAPEPNTALIEKVKAIAESRLGEAYRITEKQSRYEQIDAIKADVIAQITAEVAEGE 240

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             +EG+I+ +F  +++++VR  +L+ + R+DGR  +TVR +    G+L RTHGS++F RG
Sbjct: 241 EVSEGKIIDIFTALESQIVRGRILNGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRG 300

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQA+ V TLGT  D Q +D L+G + + F+ HYNF P + GE   +G+P RREIGHGRL
Sbjct: 301 ETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRL 360

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+R +  V+P  A+FPY +R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAM
Sbjct: 361 AKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 420

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GLVK+ + F++LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM +AL QA
Sbjct: 421 GLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQA 480

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  RLHIL  M + +   R  + +F PR+  M I P +I++VIG GG  IR + E+TG  
Sbjct: 481 KSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTS 540

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++IDDDGTVKIA+      +     I  IT   E   +YKG+V ++ DFGAFV   G ++
Sbjct: 541 IDIDDDGTVKIAAVDANSAKDVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKE 600

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVHISQ++ ERV K SD +  G  V VK+++ D +G+I+L+MK +
Sbjct: 601 GLVHISQIAEERVEKVSDYLAVGQEVSVKVVEIDRQGRIRLTMKEI 646



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 28/215 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ + T GET  LA                  +  D F    +Y 
Sbjct: 279 RALDICTGVLPR-THGSAIFTRGETQALAVATLGTERDAQIIDELTGERSDHFLF--HYN 335

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDL 122
              Y+VG+           P   EI   R+  R +  +      +    +V+  + + + 
Sbjct: 336 FPPYSVGETGMI-----GSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITESNG 390

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQGSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +  + ++V+   +   ++  G +D  
Sbjct: 391 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFK 448

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECK 212
           V+GT+  V  ++++     E +  + +    N+ K
Sbjct: 449 VAGTRQGVTALQMDIKI--EGITAEIMQIALNQAK 481


>gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
 gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
          Length = 732

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/702 (41%), Positives = 438/702 (62%), Gaps = 10/702 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +       + G+ + +E G IA+Q+ G+V+  Y +T +L+T       KD  DFFPLTV
Sbjct: 1   MEKFKKSWSFFGKTITVENGEIAKQAGGSVVVRYNDTTILSTATASSQAKDT-DFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            YQE+ YA GKIPGG+LRRE RP+E+  L +R+IDR IRPLF++ ++NE QV+  V+ +D
Sbjct: 60  LYQEKMYAAGKIPGGFLRREGRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSND 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            ++S  + S+  +S AL +S +PF GPV G QV  +NG++++NP ++E  +G L L V+G
Sbjct: 120 PDASSEMASLFGSSLALCISDIPFNGPVAGVQVVRVNGEFLINPSVEENAKGDLHLTVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSK 239
           T+ A+ MVE  A ++SE+ +L A+ FGH   + + E   ++   CAKE + +   +  SK
Sbjct: 180 TKQAINMVEAGAKEVSEETMLAALQFGHEAIQKLCEIQEEVIASCAKEKMEVTLYEIDSK 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV------SYFSSEHSSWNEGEIVS 293
           ++  + +   + +R +  I  K  R   ID L ++MV      +Y S    +    +   
Sbjct: 240 IKAYIDEKGAKRIREAVSIKAKLERYATIDALIEEMVQGVSEWAYESEADQNKAMKQARE 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
              +I+A  VR ++   K+R DGR  + +R + +QV LL R HGS+LF RG+TQ + V T
Sbjct: 300 YGVEIEANEVRRLISQDKIRPDGRALDELRSLDSQVDLLPRVHGSALFTRGETQVLSVTT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D Q +D L   +   FM  YNF P + GEV RMG+P RREIGHG L  RA+  VL
Sbjct: 360 LGPLSDAQMMDDLGMEEEKRFMHQYNFPPFSVGEVGRMGSPGRREIGHGALGERALAQVL 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R  +E+ ES+GSSS A++C  +++LM AGVPI   VAG+AMGL+  GD +
Sbjct: 420 PSEEEFPYAIRTSAEVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G EDH G MDFKVAGT  GITA+QMD+K+ GIS++I+  AL QA +GR+ IL+
Sbjct: 480 SVLTDIQGMEDHYGDMDFKVAGTREGITALQMDIKVTGISQDILREALAQAHKGRMQILD 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGT 592
            M   ++E R  + ++ P+++ + IP D+IR VIG GG++I  I+E     K++I+DDG+
Sbjct: 540 NMEACIAEPRPDVSKWAPKMDRLIIPVDKIRIVIGKGGEMIDKIIESCQDVKIDIEDDGS 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
             I       I+ A+EMI ++    +V +IY+  V  V +  AFV+  G+ D L+H+SQL
Sbjct: 600 CVIYHMDREMIDKAKEMIENLIKEAKVGEIYEACVTDVRESFAFVNLFGSVDALLHVSQL 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           S ERV    D V+ GD + VK++  D+ GK+K+S K + +  
Sbjct: 660 SWERVENIKDKVRVGDHIRVKVIQVDETGKVKVSAKELLEKP 701


>gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides BS1]
 gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides BS1]
          Length = 734

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/723 (43%), Positives = 467/723 (64%), Gaps = 29/723 (4%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFP 58
           MF     EI+   G+ + +ETG++A+Q+DGA +   G+T+V+ATVV  R+     QDFFP
Sbjct: 1   MF--IRKEIDLGDGKVITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFP 58

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           + V Y+E+ YA GK PGG+++RESRP+E EIL +R+IDR++RPLF   Y  +TQ+II+V+
Sbjct: 59  MQVEYREKYYAAGKFPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVI 118

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLF 177
             D  +   V+  +AASAA+M+S +PF   +   +V  ING++V+NP ++E  Q  +D+ 
Sbjct: 119 SSDQLNDADVLGGIAASAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDIS 178

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           + GT D + M+E E N++SE  +L+AI FGH   K +      +A    K      + D 
Sbjct: 179 IGGTNDTICMLEGEMNEISEAEMLEAIRFGHEAIKKICSLQDDIAAEVNKPKRSFLAIDA 238

Query: 238 S-KLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--------- 286
             +L+E + +  +  L+  +     K  R ++   + K +       + +          
Sbjct: 239 PDELKESIKEACEAPLKELAYMPLAKEERAEKTTAVYKSITEQILGRYKNEITAEDIAAD 298

Query: 287 -------NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
                  NE  I      I+ +V+R ++LD   R+DGR  E VR IS ++GL+ R HGS+
Sbjct: 299 PSKALYLNEQIISGHIHAIEKQVMRHMILDDAKRLDGRKLEEVRPISIELGLIPRAHGSA 358

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQA+VV+TLGT++D Q +D+L       FM+HYNF P + GE  R+G   RREI
Sbjct: 359 LFTRGETQALVVLTLGTKKDAQMIDTLLDDTEKRFMLHYNFPPFSVGETGRVGGVGRREI 418

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+  V+P  ++FPYT+R+VSEI ES+GSSSMA+VCG++LA MD GVP++KPV
Sbjct: 419 GHGNLAERAVKKVVPSESEFPYTIRLVSEILESNGSSSMASVCGATLAAMDGGVPLTKPV 478

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +GIAMGL+K+ D++ +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+  +I+  
Sbjct: 479 SGIAMGLIKEDDNYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILEK 538

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+Q+K GRLHIL++M++ +++ R ++G++ P++  + +P D I  +IG GG+ IR I E
Sbjct: 539 ALEQSKNGRLHILDKMTESIADPRGEIGQYAPKLSTIQVPVDAIGMIIGKGGETIRSITE 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVH 638
           +TGA++N+DDDGTV I+S +     AA E I+++   PEV  IY G+V  +  D GAFV 
Sbjct: 599 ETGAQINVDDDGTVTISSPNGESAAAAIETIKTLISKPEVGTIYMGKVKDIREDLGAFVE 658

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR-GKIK--LSMKVVDQN 693
                DGLVHIS+++ ERV K SD +K+GD V VKL+D   D R GKI+  LS+K +   
Sbjct: 659 ILPRTDGLVHISEIARERVNKVSDHLKQGDRVKVKLIDIRKDQRSGKIRYALSIKALLDM 718

Query: 694 TGK 696
             +
Sbjct: 719 PAE 721


>gi|46446277|ref|YP_007642.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399918|emb|CAF23367.1| probable polyribonucleotide nucleotidyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 702

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/692 (43%), Positives = 433/692 (62%), Gaps = 4/692 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T+ +    + +  ETG+IARQ+ GAV+   GETVV  T     +     DF PL V+YQE
Sbjct: 10  TISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQE 69

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +  + GK  GG+++RE RPTE E+L+SR+IDR IRP+F + Y NE Q++  V  +D  +S
Sbjct: 70  KFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINS 129

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P  +++  ASAAL++S +P   PV   ++ +I+ Q+++NP +++  Q  LDL ++GT++A
Sbjct: 130 PEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEEA 189

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEE 243
           VLM+E   + L+ED VL+AI  GH   K + + + +      K        +   +L  +
Sbjct: 190 VLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYAD 249

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQAK 301
           +  +    L  +  I EK  R + + ++ K +      E+    +    I  V +D+ +K
Sbjct: 250 VESIANPLLEKALRICEKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIKDVSSK 309

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R ++L++ VR DGR S  +R I  +  LL R HGSSLF RG+TQA+ V TLG     Q
Sbjct: 310 MMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQ 369

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             + L G   N F + Y+F P + GEV R+GAP RREIGHG+LA RA+  V+P   QFPY
Sbjct: 370 RFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPY 429

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+ S ITES+GSSSMATVCG  LALMDAGV I +PVAGIAMGL+ + + FIILSDI G
Sbjct: 430 TIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIILSDILG 489

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKV G  +GITA QMD+K+ GI+  IM +AL+QAK GR+HILN+M  V   
Sbjct: 490 IEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLAVCPT 549

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            + ++  + PR+E + I P +I  VIG GGK IR I+EQTG +++IDD G V IA+  L 
Sbjct: 550 YKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIAAIDLV 609

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            IE A+ +I  +T   E+ +IY G+ + +  FG FV     ++GL HIS+    R+    
Sbjct: 610 SIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNRINSLD 669

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           + VK+GD + VK+LD ++RG+IKLS K   Q+
Sbjct: 670 EFVKQGDMLMVKVLDINERGQIKLSRKATLQS 701


>gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
          Length = 702

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/692 (42%), Positives = 441/692 (63%), Gaps = 4/692 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   +  + +  G  L +  G++A Q++G  L   G+T++L T V     ++G DFFPL 
Sbjct: 1   MEKTYEYKSQ-NGSDLSITIGKVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLI 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            +YQE+ YAVGKIPGG+++RE + ++  ILISR +DR +RPLF + + N+ QVI      
Sbjct: 60  CDYQEKLYAVGKIPGGFIKREGKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D ++ P  ++ + AS AL +S +PF GPV    V Y++G++++NP  DE +  SLDL V+
Sbjct: 120 DEDNEPDCMTTIGASIALGISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSLDLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT DA+ MVE  AN+LSED +L+A++  H E K +   I  +     KE + +     ++
Sbjct: 180 GTADAINMVEAGANELSEDEMLEAMMVAHAEIKEICGFIQTIIDDIGKEKMEVAEVVETE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++     ED++ S    +K  R   I+ +++K    F  E    +E EI    + I 
Sbjct: 240 LQRKIKDKYTEDIKNSIRTTDKVQRENDINTIEEKCKEDFLEEFPE-SEDEIHKTVDSIM 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++   K+R DGR  + +R +SA+ GLL R HGS LF RG TQ + V+TLG+  +
Sbjct: 299 KKEVRRMISIDKIRPDGRKMDEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGE 358

Query: 360 EQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           EQ +DS++  +    ++  YNF P   G++  +  P RRE+GHG LA RA+ PVLP T  
Sbjct: 359 EQVIDSMNREEITKRYIHQYNFPPFCVGDIRPLRGPGRREVGHGHLAERALIPVLPDTND 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+  S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ +   IL+D
Sbjct: 419 FPYTIRVVSEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEENSISILTD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT  GITA+QMDMKI GI++ ++  AL  A + RL IL+ ++  
Sbjct: 479 IQGLEDHLGDMDFKVAGTKDGITALQMDMKISGINKEVLQEALADAHKARLEILDVITSA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R  L ++ PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS+
Sbjct: 539 IDKPREDLSKYAPRIFSIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASN 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A +MI+SI   P+   IY+G+V ++M+FGAFV     ++GL+HISQ+ T+R  
Sbjct: 599 DGESGKKAIQMIKSIVTDPKAGDIYEGEVKRIMNFGAFVEIAIGKEGLLHISQIDTKRTE 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K  DV+K GD V VK+ + D +G+I LS K +
Sbjct: 659 KVEDVLKIGDKVRVKVTEIDRQGRINLSRKAL 690


>gi|325479584|gb|EGC82680.1| polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 710

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/696 (41%), Positives = 433/696 (62%), Gaps = 4/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   +    +  G+  ++  G+ A Q++G      G+T +L T V     ++G DFFPL 
Sbjct: 1   MVKTYKYTSKL-GKDFEVTIGKFAEQANGECYIRSGDTSMLVTAVASEKPREGIDFFPLI 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            ++QE+ YAVGKIPGG+LRRE + ++   LISR +DR +RPLF + Y N+ Q+I  V+  
Sbjct: 60  CDFQEKLYAVGKIPGGFLRREGKSSDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSM 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P  ++ + AS AL +S +PF+GPV    V  +  + ++NP  +E ++ +L+L V+
Sbjct: 120 DEDNLPDPLTTIGASIALGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSTLELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G + A+ MVE  AN+LSE  +L+A++    E   + + I  +     KE   +   + + 
Sbjct: 180 GKKGAINMVEAGANELSESDMLEAMLLALEEIGHISDFIQSIIDDIGKEKAEVSEIEETD 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++S+  ++D++ S    +K  R   I  ++++  + +  E+   +E EI    ++I 
Sbjct: 240 LDRKISEDFEQDIKDSIRTTDKTEREDNIFRIEEEAKAKYLEEYPE-SEDEIHRRIDNIM 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++   K+R DGRD   +R +SA+ GLL R HGS LF RG TQ + VVTLG+  D
Sbjct: 299 KKEVRRMISIDKIRPDGRDLTEIRPLSAEAGLLPRVHGSGLFKRGQTQVLSVVTLGSPAD 358

Query: 360 EQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L+  +    +M  YNF P   G+V  +  P RREIGHGRLA RA+ PVLP  ++
Sbjct: 359 VQIIDGLNREEITKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGRLAERALVPVLPDESE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+  S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+D
Sbjct: 419 FPYTIRVVSEVLSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT  GITA+QMDMKI GI+  ++  +L  A   R+ IL+ +   
Sbjct: 479 IQGLEDHLGDMDFKVAGTRDGITALQMDMKISGITREVLEKSLADAHDARMRILDVIETA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R  + ++ PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS 
Sbjct: 539 IKSPRADISDYAPRLYTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASD 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    + A EMI++I   P+   IY G+VV++M+FGAFV     ++GL+HISQ+   RV 
Sbjct: 599 NGESGKKAIEMIKAIVTDPKPGDIYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVE 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K  DV+  GD V VK+ + D +G+I LS K + +  
Sbjct: 659 KVEDVLSVGDEVKVKVTEIDRQGRINLSRKALLEKP 694


>gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
 gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
          Length = 716

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/691 (39%), Positives = 426/691 (61%), Gaps = 6/691 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +  ++  GRPL +E G++A  +  + +  YGET VL  V      +DG DFFPL+V 
Sbjct: 12  NYKSWTMDLCGRPLTIEVGKVAELASASAMVKYGETTVLVAVTVSPRPRDGIDFFPLSVE 71

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++E+ YAVG+IPG ++RRE RP+   +L SR+IDR +RPLF   ++N+  +   VM  D 
Sbjct: 72  FEEKLYAVGRIPGSFMRREGRPSLPAVLASRLIDRPMRPLFPYDFRNDVCIQCTVMSVDY 131

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP V +M+ ASA +  S +PF GP+   +V Y +GQ VLNP  ++ +   +D+ V+ T
Sbjct: 132 DCSPEVAAMIGASACVSYSEIPFAGPIGCLEVGYCDGQIVLNPNQEQRKTSRMDVTVAAT 191

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            + V+M+E  A+++ ++++   I+  H E K  I+ I+++     K  +  +   F+ +L
Sbjct: 192 AEKVVMIEAGADEIPDEIMYAGIVKAHEEIKKQIDFINQIVAEIGKPKMEYEHAQFNQEL 251

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            +++     ++ + +    +K VR  + + +  K    +  E+   ++  +       Q 
Sbjct: 252 FDKIVDEFMDEAKAAMDTDDKNVRETRWNAMIDKWHEKYLEEYPDMDQ-YLEEFTYKFQK 310

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+V+  +L+   R+DGR    +R ++A+VG+L R HGS LF RG TQ + V TL T    
Sbjct: 311 KIVKAWLLE-GHRVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAAC 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++       +M HYNF P + GE     + +RRE GHG LA RA+ PVLP   +FP
Sbjct: 370 QKLDTIWEEDEKRYMHHYNFPPYSVGEARAPRSTNRREYGHGALAERALVPVLPSVEEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479
           Y +R+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL++D +  F    DI
Sbjct: 430 YAIRVVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDNGGFTTFIDI 489

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS-KV 538
            G ED  G MDFKVAGT +GITA+QMD+K  G++  I+  AL+  +  R  IL+E+    
Sbjct: 490 QGVEDFHGEMDFKVAGTKAGITAIQMDLKNDGLTHEIIKEALEITRDARYAILDEIMLPC 549

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S  R ++ ++ P++  M I PD+IR VIG GG VI+ I  ++GA V+I+DDGT+ IAS 
Sbjct: 550 ISAPRAEVSKYAPKMITMKIDPDKIREVIGKGGSVIQKITAESGATVDIEDDGTIHIASP 609

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    +AA++MI +I  VP+V ++Y G+VV+++ FGAFV     +DG+VHIS+L+  RV 
Sbjct: 610 NAEACDAAKKMIETIVFVPQVGELYYGKVVRILQFGAFVELAPGKDGMVHISKLADRRVE 669

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           K  DVV  GD +WVK+ D DD+G++ LS + 
Sbjct: 670 KVEDVVNIGDMIWVKVTDIDDKGRVNLSYRD 700


>gi|253580814|ref|ZP_04858077.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847884|gb|EES75851.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 697

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/700 (39%), Positives = 418/700 (59%), Gaps = 15/700 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++  R+A+Q++GA L  YG+T VL+T    +  ++G DFFPL+V Y+
Sbjct: 3   KSYSMELAGRTLTVDINRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P + +M+ +S A  +S +PF+GP    QV  ING+Y++NP + +     L L V+ T++
Sbjct: 123 NPEIPAMLGSSIATCISDIPFDGPCATTQVGLINGEYIINPTMAQKDVSDLQLTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E  A ++ ED +++AI   H   + +I+ I K+ + C K     +S     + EE
Sbjct: 183 KVIMIEAGAKEVPEDKMIEAIYKAHEVNQEIIKFIDKIVEECGKPKHSYES---CAVPEE 239

Query: 244 MSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   IKE     ++ V+ F  +K  R + I  + +K+   F+ +        +       
Sbjct: 240 LFAAIKEVVPPAEMEVAVFSDDKQTREENIRQVTEKLKEAFADKEE--WLAVLGEAVYQY 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR    +R ++A+  ++ R HGS++F RG TQ   + TL    
Sbjct: 298 QKKTVRKMILKDHKRPDGRAITQIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLA 357

Query: 359 DEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   
Sbjct: 358 EAQKLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+I+
Sbjct: 418 EFPYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGDTDDDYIV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E 
Sbjct: 478 LTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M K ++  R  +GE+ P++  + I P +I +V+G  GK I  I+E+TG K++I D+G V 
Sbjct: 538 MEKCIAAPRTTVGEYAPKIIQIQIDPQKIGDVVGQRGKTINTIIERTGVKIDITDEGAVS 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I       ++ A  M++ I    E  +I+ G+VV + +FGAFV F   ++G+VHIS++  
Sbjct: 598 ICGVDQKSMDEAANMVKIIATDFEAGQIFTGKVVSIKEFGAFVEFAPGKEGMVHISKICK 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           ER+ +  DV+  GD V V  L  D  G+I  SMK V +  
Sbjct: 658 ERINRVEDVLTLGDKVKVICLGKDKMGRISFSMKDVPEEA 697


>gi|187610325|sp|Q6MDI2|PNP_PARUW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 697

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/692 (43%), Positives = 433/692 (62%), Gaps = 4/692 (0%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T+ +    + +  ETG+IARQ+ GAV+   GETVV  T     +     DF PL V+YQE
Sbjct: 5   TISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQE 64

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +  + GK  GG+++RE RPTE E+L+SR+IDR IRP+F + Y NE Q++  V  +D  +S
Sbjct: 65  KFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINS 124

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P  +++  ASAAL++S +P   PV   ++ +I+ Q+++NP +++  Q  LDL ++GT++A
Sbjct: 125 PEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEEA 184

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKLEEE 243
           VLM+E   + L+ED VL+AI  GH   K + + + +      K        +   +L  +
Sbjct: 185 VLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYAD 244

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQAK 301
           +  +    L  +  I EK  R + + ++ K +      E+    +    I  V +D+ +K
Sbjct: 245 VESIANPLLEKALRICEKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIKDVSSK 304

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R ++L++ VR DGR S  +R I  +  LL R HGSSLF RG+TQA+ V TLG     Q
Sbjct: 305 MMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQ 364

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             + L G   N F + Y+F P + GEV R+GAP RREIGHG+LA RA+  V+P   QFPY
Sbjct: 365 RFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+ S ITES+GSSSMATVCG  LALMDAGV I +PVAGIAMGL+ + + FIILSDI G
Sbjct: 425 TIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIILSDILG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKV G  +GITA QMD+K+ GI+  IM +AL+QAK GR+HILN+M  V   
Sbjct: 485 IEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLAVCPT 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            + ++  + PR+E + I P +I  VIG GGK IR I+EQTG +++IDD G V IA+  L 
Sbjct: 545 YKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIAAIDLV 604

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            IE A+ +I  +T   E+ +IY G+ + +  FG FV     ++GL HIS+    R+    
Sbjct: 605 SIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNRINSLD 664

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           + VK+GD + VK+LD ++RG+IKLS K   Q+
Sbjct: 665 EFVKQGDMLMVKVLDINERGQIKLSRKATLQS 696


>gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides DSM 266]
 gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 732

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/720 (44%), Positives = 456/720 (63%), Gaps = 27/720 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTV 61
           +    I+   G+ L +ETG++A+Q+DGA L   G+T+VLATVV  ++     QD+FPL V
Sbjct: 2   IINKAIDLGKGKILSIETGKMAKQADGAALVRLGDTMVLATVVSSKTPPPANQDYFPLQV 61

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+  A GK PGG+ +RE RP+E EIL +R+IDR++RPLF   Y  ETQ+I+ V   D
Sbjct: 62  EYREKYSAAGKFPGGFFKREGRPSEKEILTARLIDRALRPLFPDGYLFETQIIVTVFSSD 121

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
             +   V+  VAASAA+M+S +PF   +   +V  ING++++NP ++E Q   +D+ + G
Sbjct: 122 QINDADVLGGVAASAAIMVSDIPFHNSMSEVRVGRINGEFIVNPNINELQGSDIDICIGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSK 239
           T + + M+E E  ++SE  +LDAI FGH   + +     ++A   A+        K  +K
Sbjct: 182 TANTICMLEGEMKEISEAEMLDAIKFGHEAIRKICALQDEMAAEIARPQRSFAPVKAPAK 241

Query: 240 LEEEMSQMIKEDLRVSCFIPE-KYVRCKQIDDLKKKMV-------------SYFSSEHSS 285
           L+E ++ + +  L+   + P  K  R ++   + K+ +                ++E   
Sbjct: 242 LKEVIAGLSETRLKELAYTPLCKEDRAEKTASVYKETLQSTLELFKALLTPEEIAAEPEK 301

Query: 286 W---NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
               N   I      ++ KV+R ++LD   R+DGR  + +R IS ++G++ R HGS+LF 
Sbjct: 302 ALCLNAHIIEEEIHAVEKKVMRHMILDDGKRLDGRTLDEIRPISIELGIIPRAHGSALFT 361

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V +TLGT++D Q VD+L+ +    FM+HYNF P + GE  R+G   RREIGHG
Sbjct: 362 RGETQALVTITLGTKKDAQSVDTLTDSADKRFMLHYNFPPFSVGETGRVGGTGRREIGHG 421

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA R+I  V P    FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GI
Sbjct: 422 NLAERSIKMVSPSETDFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGI 481

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+GD + +LSDI G+EDHLG MDFKVAGT+ GITA QMD+KI G+  +I+  AL+
Sbjct: 482 AMGLIKEGDAYSVLSDILGNEDHLGDMDFKVAGTEDGITACQMDIKIDGLDYHILETALE 541

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA++GRLHIL++M   +  SR +L ++ PR+  + IP D I  +IG GG+ IR I E+TG
Sbjct: 542 QARKGRLHILDKMEVAIPISRGELAQYAPRLTSIQIPVDAIGLIIGKGGETIRSITEETG 601

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCG 641
           A++NI+DDGTV IA SS     AA E I+++   PE+   Y G+V  + D  GAFV F  
Sbjct: 602 AEINIEDDGTVTIACSSPEGTNAAVETIKTLISKPEIGNTYLGKVRDIRDELGAFVEFLP 661

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQNTGK 696
             DGLVHIS++S ERV K SD +K GD V VKL+D   D R    +  LS+K V+    K
Sbjct: 662 KTDGLVHISEISKERVTKVSDHLKVGDRVKVKLVDIRKDPRTGKNRFALSIKAVESEPEK 721


>gi|168333339|ref|ZP_02691623.1| Polyribonucleotide nucleotidyltransferase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 698

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/696 (40%), Positives = 444/696 (63%), Gaps = 11/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T ++E AGR LK+E G++A  ++GA L TYGET +LAT V     K+G DFFPL+VNY
Sbjct: 2   VKTYKMELAGRELKVEIGKMAELANGAALVTYGETCILATAVASDKPKEGIDFFPLSVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA+GKIPGG+L+RE RP++  +L SR+IDR +RPLF K Y+N+  +   VM  + +
Sbjct: 62  EEKIYAIGKIPGGFLKREGRPSDKAVLTSRVIDRPLRPLFPKDYRNDVVITTTVMSVEQD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP + SM+AAS  L +S +PF GPV    V  ++G+ V+NP + + + S L L VS ++
Sbjct: 122 CSPEITSMIAASLVLDISEIPFNGPVGSVFVGLVDGEIVINPTMAQREKSQLALTVSSSK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS---K 239
           D V+M+E  AN++SE+V+L+AI  GH   + +++ IS++   C K     D + ++   +
Sbjct: 182 DKVMMIEAGANEISEEVMLEAIYKGHQANQEIVKFISEIRDDCGKPKR-YDYEKYTLPLE 240

Query: 240 LEEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           + + + +++ K  +  + F  +K  R  ++++L +++ +  + E        +   F   
Sbjct: 241 IYDRVCEIVGKPAMEGAIFTTDKLARGMRLEELLQEVKAVMAEEDMDAMP-YVEDAFYKY 299

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K+VR  +L    R DGR  + +R + A+V L+ R HGS +F RG TQ + + TL    
Sbjct: 300 EKKIVRDSILKDHKRPDGRALDEMRILKAEVDLIPRVHGSGMFTRGQTQVLTITTLAPLS 359

Query: 359 DEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        +M HYNF P + GE     +  RREIGHG LA RA+ PVLP   
Sbjct: 360 EAQIIDGLDELDVLKRYMHHYNFPPFSVGEAKPPRSVGRREIGHGALAERALIPVLPTEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFII 475
           +FPY +R+VSE+  S+GS+S A++CGS+LALM AGVPI  PVAGI++GLV  +  +DF++
Sbjct: 420 EFPYAMRLVSEVLSSNGSTSQASICGSTLALMAAGVPIKAPVAGISVGLVTGESTEDFVL 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED  G MDFKV G+ +GITA+QMDMKI G++  I+  A +Q +  R +I++E+
Sbjct: 480 LTDIQGLEDFFGDMDFKVGGSKNGITAIQMDMKIDGLTYEIIKGAFEQTRIAREYIIDEI 539

Query: 536 S-KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
             K + ++R  L ++ P +  + + PD+I  +IG  GK I  I+E+TGAK++I+DDG + 
Sbjct: 540 MLKAIDKTRETLSKYAPCITQIKVNPDKISEIIGQKGKTINKIIEETGAKIDIEDDGRIA 599

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I ++  A  +   E+I  I    EV +++ G+VVK+++ GAFV     ++GLVHISQ++ 
Sbjct: 600 ICTNDEASAKRTIEIIERIAKXLEVGQVFLGKVVKIINIGAFVELAPGKEGLVHISQIAH 659

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            RV K  DV+K GD++ VK+++ D +G++ LS K +
Sbjct: 660 NRVEKVEDVLKVGDSIEVKIIEIDKQGRVNLSRKAL 695


>gi|73748737|ref|YP_307976.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
           CBDB1]
 gi|289432763|ref|YP_003462636.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
 gi|123759782|sp|Q3ZXV6|PNP_DEHSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|73660453|emb|CAI83060.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
           CBDB1]
 gi|288946483|gb|ADC74180.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
          Length = 720

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/701 (41%), Positives = 455/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G++AR +D A+   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++N+ Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  +++ YING++VLNP   + + S LDL V 
Sbjct: 121 DKENDADIWGVVGASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQLDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+ AV+M+E  + ++ ED++++AI F H   + +I+   ++     KE + +   +  +
Sbjct: 181 STRKAVVMIEAGSKEIPEDIMINAIEFAHKANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++  ++  +K  +  +    +K  R   ++ L+ ++V+  S    ++ EG+I++ ++  
Sbjct: 241 EVKTAVAAFVKGRVNEALSHQDKTARENAVEGLQAELVAALSE---TFAEGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ GLL R HGS+LF RGDTQ + + TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP   +
Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  + D +  ++
Sbjct: 418 FPYTIRLVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +I+  A+ QAK  R +IL+ M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  + I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKINIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A ++I  +T   E   IY G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 TDEASAKKAIKIIEDLTKDIEAGSIYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  D+VK GD + VK+++ D++G++ LS +V+      PI
Sbjct: 658 EKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPI 698


>gi|299144054|ref|ZP_07037134.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518539|gb|EFI42278.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 714

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/688 (41%), Positives = 448/688 (65%), Gaps = 3/688 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               ++ AGR LK+  G++A Q++GA L  YG+TVVL TV   ++ +DG DFFPL+V+++
Sbjct: 3   KIFTLDLAGRTLKVTVGKVAEQANGACLVEYGDTVVLVTVTASKTPRDGIDFFPLSVDFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGK+PGG+++RE +P+E  IL SR+IDR IRPLF + Y+N+ QV+  V+  D + 
Sbjct: 63  EKMYAVGKMPGGFIKREGKPSEKSILSSRLIDRPIRPLFPEGYRNDVQVVATVLSVDQDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M+ +S AL +S +PF+GP     V Y++G+Y++NP   E ++  + L VSGT+ 
Sbjct: 123 QPDIVGMIGSSIALSISDIPFDGPTGSVLVGYVDGKYIVNPTETEREKSDIYLVVSGTKT 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
           A++MVE  AN +SE+ +L+AI+  H E K + + + ++     K+    +  K   +++ 
Sbjct: 183 AIMMVEAGANIVSEETMLNAILTAHEEIKKICDFVDQIKAEVGKDKTSYEVFKPNEEIKT 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           ++ +     +  +   P+K +R +++++ K+ +  +F      +++   + + E    + 
Sbjct: 243 KVKEYGTSMIVDAINEPDKIIRIEKVEEAKENIRKHFEELMEEFSKDIEIIMEEIEVTE- 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR  +++ ++R DGR  + +R +S++ G+L RTHGS LF RG TQ + + TL    D Q 
Sbjct: 302 VRRGIIEDEIRPDGRKLDEIRHLSSETGILPRTHGSGLFTRGQTQVLSIATLAGLSDVQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D L   +   ++ HYNF P + G+   M  P RREIGHG LA +A+ PV+P   +FPY 
Sbjct: 362 IDGLGDDKPKRYIHHYNFPPFSVGDTKPMRGPGRREIGHGALAEKALLPVIPTEEEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+  S+GSSS A+VCGS+LALMDAGVPI  PVAGIAMGL+++     IL+DI G 
Sbjct: 422 IRVVSEVLSSNGSSSQASVCGSTLALMDAGVPIKAPVAGIAMGLIEENGITKILTDIQGL 481

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA+QMD+K+ GIS+ ++ +AL++AK+ RL IL  ++  +SE 
Sbjct: 482 EDHFGDMDFKVAGTKEGITAIQMDIKVEGISKEVLAVALERAKKARLEILEHLNTTISEP 541

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +L  + P + I+ I P++I  VIG GGK+I  I+E+TG K++ID+DG V + S +  +
Sbjct: 542 RKELSPYAPIIHIIIIDPEKIGEVIGTGGKMINKIIEKTGVKIDIDEDGKVSVLSENSEK 601

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A  +I SI    EV  I++G+V K+M FGAFV      + L+HIS++  ER  K  D
Sbjct: 602 AKEAISIIESIVKEVEVGDIFEGKVKKIMKFGAFVELKKGVEALLHISEIQHERTNKVED 661

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ++K GD V VK+++ D+ GK+ LS KV+
Sbjct: 662 ILKIGDIVKVKVIEIDEDGKMSLSRKVL 689


>gi|297620923|ref|YP_003709060.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297376224|gb|ADI38054.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 698

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/694 (41%), Positives = 442/694 (63%), Gaps = 5/694 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  ++++      +  ETG+IARQ++GAV+   GET++  +        +  DF PL V
Sbjct: 1   MEKKSMKVVVGEEEITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + GK  GG+++RE RPTE E L+ R+IDR IRPLF + Y  +TQ++  V  +D
Sbjct: 61  DYQEKFASAGKTLGGFIKREGRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSG 180
             +SP  +++ AASAAL +S +P +  V   +V  I+GQ++LNP ++ +++  LDL ++G
Sbjct: 121 GVNSPDALAICAASAALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVLDLMIAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DAVLM+E     L+E+ V++AI  GH   + +  A+    +   K   +   K  + +
Sbjct: 181 TEDAVLMIEGYCKFLTEEQVIEAISIGHQGIQTICRALENWRQEVGKPKNLSKLKPLAKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWNEGEIVSVFE 296
           + + + +++K+DL     I +K  R +  D +KK++         E   +   E+   F+
Sbjct: 241 VIDAVEELVKDDLNQVLQIVDKKEREEAFDQIKKRVNETLCPEGEEAPKFEALEVAKAFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            + +  +R +++ +  R DGR +  VR I  + GLL RTHG SLF RG+TQ + + TLG 
Sbjct: 301 KVSSGHMRRMIVKENKRSDGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGG 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
               Q  + L+G     F + Y F P + GEV R+G P RRE+GHG+LA RA+  +LP  
Sbjct: 361 NNMAQRYEDLNGEGSRSFYLQYFFPPFSVGEVGRVGPPGRREVGHGKLAERALASILPSK 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+R+ S ITES+GSSSMA+VCG  LA+MDAGVPI++PV+GIAMGL+ + + + IL
Sbjct: 421 EEFPYTIRLESNITESNGSSSMASVCGGCLAMMDAGVPITRPVSGIAMGLILEENHYTIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED LG MDFKV G  +GITA QMD+K+ GI+ +IM  AL QAK GR+HIL +M 
Sbjct: 481 SDILGIEDALGDMDFKVTGDKNGITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEKMF 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +   E + Q+ ++ PR+E++ + P +I  +IG GGK IR I+E+TGA+++IDD+G V I+
Sbjct: 541 EACPEPKKQMSKYAPRIEVLKVKPSKIGTIIGPGGKQIRAIIEETGAEIDIDDEGFVTIS 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS+L  ++ A+ +I  +T   E+ K+Y+G++  V+ FG FV     ++GL HIS+  T+R
Sbjct: 601 SSNLDGLQKAKRIIEDLTAEVEIGKVYEGKITSVVPFGIFVEILPGKEGLCHISEFDTQR 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               ++VVK GD V VK++D ++RG++ LS KV+
Sbjct: 661 TNDLNEVVKVGDNVRVKVMDINERGQLVLSRKVL 694


>gi|153812986|ref|ZP_01965654.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
 gi|149830933|gb|EDM86023.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
          Length = 691

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/692 (39%), Positives = 423/692 (61%), Gaps = 9/692 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VL+T    +  ++G DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  ++  VM  D E +P +
Sbjct: 61  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPEI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
            +M+ +S A  +S +PF+GP    QV  I+G++V+NP L + +   L L V+ T++ V+M
Sbjct: 121 PAMLGSSIATCISDIPFDGPCATTQVGLIDGEFVINPSLAQKELSDLQLTVASTREKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQ 246
           +E  AN++ ED +++AI   H+  + +I  I K+   C KE  +  S     +L E + +
Sbjct: 181 IEAGANEVPEDTMIEAIYKAHDVNQEIIRFIDKIVAECGKEKHLYASCAVPEELFEAIKK 240

Query: 247 MI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++  E++  + F  +K  R + I ++  ++   F+   +      +       Q K VR 
Sbjct: 241 IVPPEEMEEAVFTDDKQTREENIREITARLQDAFA--DNEEWLAVLGEAVYQYQKKTVRK 298

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   + TL    + Q +D 
Sbjct: 299 MILKDHKRPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQICTMTTLAPLSEAQRIDG 358

Query: 366 LSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FPY +R
Sbjct: 359 LDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSAEEFPYAIR 418

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGD 482
            VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+I+L+DI G 
Sbjct: 419 TVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISCGLVTGATDDDYIVLTDIQGL 478

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSE 541
           ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E M K ++ 
Sbjct: 479 EDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAIRRTKEAREYILTEVMEKCIAA 538

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + ++ P++  + I P +I +V+G  GK I  I+E+TG +++I D+G V I      
Sbjct: 539 PRDHVNKYAPKIVQIQIDPQKIGDVVGQRGKTINAIIERTGVQIDITDEGAVSICGVDQH 598

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++ A++MI++I    E  +I++G VV + +FGAFV F   ++G+VHIS++S  R+ +  
Sbjct: 599 GMDEAKKMIKTIATDFEAGQIFEGTVVSIKEFGAFVEFAPGKEGMVHISKISDHRINRVE 658

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           DV+  GD V V  +  D  G++  S+K V + 
Sbjct: 659 DVLTLGDKVKVICMGKDKMGRMSFSIKDVPEE 690


>gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis
           str. McKiel]
 gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis
           str. McKiel]
          Length = 747

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/696 (46%), Positives = 481/696 (69%), Gaps = 3/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L+L TG+IARQ+DG+V    G +V+L T V   + K+G  FFPLT
Sbjct: 1   MFNEITKSVTWNGKVLELSTGKIARQADGSVTVKMGNSVLLCTAVVANTAKEGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  YAVGKIPGG+ +RE + +E E+L+SR+IDR IRPLF   + NET V   V+ +
Sbjct: 61  INYREMAYAVGKIPGGFFKREGKASEREVLVSRLIDRPIRPLFHPAFVNETHVTCTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALALSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT ++V+MVE EA+ LSE  +L+A+ FG    +PV++ I +LA+   +  + +     S 
Sbjct: 181 GTTESVMMVESEAHLLSEAQMLEAVKFGFESFQPVVKIIKELAEEAKRPKLEMQDLYPSV 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFED 297
           L+ E+ Q+  +++  +  I  K  R   +D + +K++++F S  E+  +N  +I S  + 
Sbjct: 241 LKNEIEQLFAKEIEQAFAIKSKQERSTSLDLISEKVITHFISNIENKKYNNYQIESALKS 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++ ++R  +L+K  R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  TLGT 
Sbjct: 301 VESDILRKEILEKNKRIDGRSTMDIRQIACEVGLLPSAHGSALFTRGETQSLVSSTLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VD+L G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDNLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM  G+PI  PVAGIAMGLVK+G  F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMQTGIPIKAPVAGIAMGLVKEGKKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+K
Sbjct: 481 DILGDEDYFGDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+IR++IG GGK+I+ I E +GAK++I DDGTV + +
Sbjct: 541 VISKPNSELSKNAPSTTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   +++ A + I++I   PE+ +I+ G V K++D GAF+++ G +DG VHIS++S ER+
Sbjct: 601 ADRDKLKIASDKIKAIAIEPEIGEIFNGTVTKILDSGAFINYLGNKDGFVHISEISEERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              S V+K+GD V VKL+ FD++GK KL++K  D++
Sbjct: 661 DTVSSVIKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696


>gi|51246460|ref|YP_066344.1| polynucleotide phosphorylase/polyadenylase [Desulfotalea
           psychrophila LSv54]
 gi|81641366|sp|Q6AJY9|PNP_DESPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50877497|emb|CAG37337.1| probable polyribonucleotide nucleotidyltransferase [Desulfotalea
           psychrophila LSv54]
          Length = 692

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/693 (47%), Positives = 467/693 (67%), Gaps = 6/693 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+   VE +  G+ + +ETG++A+Q+ G+++ + G TVVL TVV  ++     DF PLT
Sbjct: 1   MFNK--VEADIDGKLISIETGKLAKQASGSIVISCGGTVVLVTVVGAKTSNPNVDFLPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           + YQE+  AVG++PG Y RRE  RP++ E+L  R+IDR +RPLF + Y++ETQVI  V+ 
Sbjct: 59  IEYQEKFSAVGRVPGNYFRREIGRPSDQEVLTCRIIDRPLRPLFPEGYRSETQVIATVLS 118

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D  +SP V+++  ASAAL +S +PF GPV G ++ YI+G+YVLNP   E + S +DL V
Sbjct: 119 ADQVNSPDVLALTGASAALSISHIPFAGPVAGGRIAYIDGKYVLNPTFAELESSSMDLMV 178

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF- 237
           + T++A++MVE +A++LSED +L AI F     +P+I    +L +    E IV++S    
Sbjct: 179 ACTRNAIVMVEGKADELSEDEILGAIFFAFENLQPLINLQDELQRANGLEKIVVESPVID 238

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++L+ ++ ++    ++      +K  R K  DDLKK++V+   +E       EI S+  D
Sbjct: 239 AELKAKVVEIAAAGMQKVYTTVDKLERGKVYDDLKKEVVAQLDTEE-GLRASEISSLLSD 297

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            +   +R   ++  VR+ GR  + +RDIS++   L +THGS+LF RG+TQA+V  TLG+ 
Sbjct: 298 FKKTYLREKTVNTGVRIGGRAWDEIRDISSETEYLPKTHGSALFTRGETQALVTATLGSE 357

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D+Q V++L+G     FM+HYNF P   GE   +  PSRR+IGHG LA R +  VLP   
Sbjct: 358 RDKQRVETLNGETSRRFMLHYNFPPYCVGEARFLRGPSRRDIGHGTLATRGLEAVLPSEE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSEI ES+GSSSMA+VCG S+A+MDAGVP+ +PV+GIAMGL+K+G+   ILS
Sbjct: 418 DFPYAIRVVSEILESNGSSSMASVCGGSMAMMDAGVPLKRPVSGIAMGLIKEGEGVAILS 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKV GT  GITA+QMD+KI G+S +IM  AL QAKRGR+HIL EMSK
Sbjct: 478 DILGDEDHLGDMDFKVVGTCDGITALQMDIKIDGVSRDIMSNALDQAKRGRMHILEEMSK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E+R ++ E  P+  I  I  D+IR++IG GGK+I+ +  Q  AK+ +DD G VK+  
Sbjct: 538 GIAEARAEVVEHAPKYFIHKISQDKIRDIIGPGGKIIKELSAQYDAKIEVDDSGLVKMFV 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           ++ A  EA  E ++SIT   EV  +Y G+V  + DFGAFV      DGLVHIS+L+ ERV
Sbjct: 598 ANGALAEALVERVKSITAEVEVGAVYTGKVKTIKDFGAFVEILPGTDGLVHISELALERV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              +DVV EGDT+ VK+LD D+RG+I+LS K +
Sbjct: 658 KDVTDVVNEGDTIEVKVLDVDNRGRIRLSRKAL 690


>gi|160940474|ref|ZP_02087819.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437054|gb|EDP14821.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
           BAA-613]
          Length = 707

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/701 (39%), Positives = 419/701 (59%), Gaps = 17/701 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  ++ AGR L +E GR+A Q+ GA    YG+TVVL+T       ++G DFFPL+
Sbjct: 1   MF--KSFSMDLAGRKLTVEVGRVAAQASGAAFMHYGDTVVLSTATASSKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ Y+VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKLYSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMCV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D   SP + +M+ ++ A  +S +PF GP    QV  I+G++++NP  D+ Q   + L V+
Sbjct: 119 DPNCSPELTAMLGSAIATSISDIPFAGPCATTQVGLIDGEFIINPTADQKQVSDMALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ V+M+E  AN++ E +++DAI   H   + +I+ I  +   C KE    +S     
Sbjct: 179 STREKVIMIEAGANEVPEQIMIDAIFRAHEVNQEIIKFIDTIVAECGKEKHTYES---CA 235

Query: 240 LEEEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + EE+   I+E     ++  + F  +K  R K I ++  K+   F+   +      +   
Sbjct: 236 VPEELFAAIREIVTPQEMEEAVFTDDKQTREKNIAEITAKLEEAFAG--NEEWLAVLGEA 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L    R DGR    +R ++A+V LL R HGS +F RG TQ +   TL
Sbjct: 294 VYQYQKKTVRKMILKDHKRPDGRAITEIRHLAAEVDLLPRVHGSGMFTRGQTQILNACTL 353

Query: 355 GTREDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 354 APLSEAQKLDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVL 413

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P   +FPY +R VSE  ES+GS+S A++C S+L+LM AGVP+ + VAGI+ GLV     D
Sbjct: 414 PSAEEFPYAIRTVSETMESNGSTSQASICASTLSLMAAGVPLKEMVAGISCGLVTGDTDD 473

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+++L+DI G ED  G MDFKV GT +GITA+QMD+KI G++  I+  A+ + +  R++I
Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVGGTKNGITAIQMDIKIHGLTRPIIEEAIARTREARMYI 533

Query: 532 LN-EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L+  M  V+SE R  L  + P+++ + I P +I +V+G  GKVI  I+E+TG K++I DD
Sbjct: 534 LDNVMRPVISEPRKHLSPYAPKIKQITIDPQKIGDVVGKQGKVINKIIEETGVKIDITDD 593

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V +  +  A I+ A ++I  I    E   I+ G+VV++M+FGAFV     +DG++HIS
Sbjct: 594 GAVNVCGTDEAMIDKAIQIITGIVTDIEAGMIFNGKVVRIMNFGAFVELAPNKDGMIHIS 653

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +LS +RV K  DVV  GD V VK+ + D  G+I L+M+  D
Sbjct: 654 KLSDKRVGKVEDVVNIGDEVTVKVTEVDKMGRINLTMRPSD 694


>gi|270308241|ref|YP_003330299.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Dehalococcoides sp. VS]
 gi|270154133|gb|ACZ61971.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Dehalococcoides sp. VS]
          Length = 720

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/701 (41%), Positives = 452/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G+IAR +D AV   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLIIESGKIARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++NE Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  ++V YING++VLNP   + +Q  +DL V 
Sbjct: 121 DKENDADIWGVVGASTVLTMSQIPYEGPVGASRVGYINGEFVLNPTFAQLEQSQMDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            T+ AV+M+E  + ++ ED+++ AI F H   + +I+   ++     KE + +   +   
Sbjct: 181 STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  ++  +K  +  +    +K +R   ++ L+ ++V   +  ++   EG+I++ ++  
Sbjct: 241 EVKAAVAAFVKGRVNEALSYQDKTLRENAVEALQSELVEALAETYA---EGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ G+L R HGS+LF RGDTQ + V TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAVTTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP   +
Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  + D +  ++
Sbjct: 418 FPYTIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +++  A+ QAK  R +IL  M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYNILEVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  ++I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A ++I  +T   E   +Y G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 TDEASAQKAIKIIEDLTKDIEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  D+VK GD + VK+ + D +G++ LS +V+      PI
Sbjct: 658 EKVEDIVKVGDEITVKVTEIDSQGRVNLSRRVILNPNAVPI 698


>gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
           8797]
 gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
           8797]
          Length = 711

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/693 (42%), Positives = 430/693 (62%), Gaps = 8/693 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              VE E  G+ L L TG++A+Q+ GAVL  YGETVV          + G DFFPLTV+Y
Sbjct: 2   KVVVECEVGGQKLSLTTGQLAKQAAGAVLVQYGETVVFVAA-ATGPGRPGIDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER  A GK PGG+L+RE RPT  EIL +R+ DR IRPLF K + +E Q+  NVM  D  
Sbjct: 61  RERAAASGKFPGGFLKREGRPTTKEILTARLTDRPIRPLFPKGFHDELQIQSNVMSCDGI 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+S+  ASAAL LS +PF+GP+   ++  I+G+ ++ P  ++  +G LDL V+GT 
Sbjct: 121 NEPDVLSINGASAALCLSPVPFQGPIGAVRIGRIDGELIVFPNHEQIAEGDLDLIVAGTI 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           ++VLM+E   NQ+ ED +L+AI+  H E   + +   +L +    EP   ++   +    
Sbjct: 181 ESVLMIEGFGNQIPEDEMLEAIMLAHTELAKICKLQLELREKAGIEPFEYEAPPENPFVA 240

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFED 297
           ++   I + L  +     K  R      +++++++ F  E +   E     G+    F D
Sbjct: 241 KLDDAIFQKLSSAMQSTVKAERRDGAKAIQEELINKFFPEGADTTEDGATIGDFKEAFHD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++AK VR + +    R+DGR  + +RD++ + G L R HGS++F RG+TQ++  VTLGT 
Sbjct: 301 LEAKAVREMAI-TGRRLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLATVTLGTS 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D+Q VD L   +   FM+HY F   + GE   +  P RREIGHG LA R++ PVLP   
Sbjct: 360 RDKQRVDGLFEEELQQFMLHYYFPSFSVGECRPIRGPGRREIGHGCLAERSVLPVLPNEE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R++S+I ES+GSSSMA+VC ++LALMDAGVP+ +PVAGI++GLV  G ++ IL+
Sbjct: 420 DFPYTIRVISDILESNGSSSMASVCSATLALMDAGVPLRQPVAGISIGLVTKGKEYKILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDH   MDFKVAGT  GIT +Q+D+K  GI+E I+   L+QAK+ RL +L  M  
Sbjct: 480 DIIGDEDHFCDMDFKVAGTQKGITGIQLDLKNDGINEEIIKATLEQAKKARLELLRTMLT 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++  + PR+    I P++I  +IG GGK IR I E+TGA ++I DDGTV ++ 
Sbjct: 540 AIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEETGATIDIQDDGTVTVSG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +++ +E A   I ++T+   V +IY G V  + +FGAF+     +DGL HIS+LS   V
Sbjct: 600 GNVSVVEKAMAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              SD+ K GD + VK++  DD+ ++KLS K V
Sbjct: 660 KSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAV 692


>gi|255505938|ref|ZP_05349011.3| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
           DSM 14469]
 gi|255265001|gb|EET58206.1| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
           DSM 14469]
          Length = 689

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/694 (40%), Positives = 423/694 (60%), Gaps = 15/694 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L+++ GR+A+Q++GAVL  YG+T VL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRTLRVDVGRVAKQANGAVLMHYGDTTVLSTATASEKPREGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D + SP +
Sbjct: 61  AVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNLVLSVDPDCSPEL 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
            +M+ ++ A ++S +PF+GP    QV  +NG++V NP   +     L L V+ T+D V+M
Sbjct: 121 TAMLGSAIATVISDIPFDGPTSTTQVGLVNGEFVFNPNAAQKAVSDLQLTVASTRDKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFSKLEE 242
           +E  AN++ ED +++AI   H   + VI+ I  +   C KE        +  + F+ + E
Sbjct: 181 IEAGANEVPEDKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHTYTSCAVPEELFAAIRE 240

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +S    E++ V+ F  EK  R   I ++K K+   F+   +      I       Q K 
Sbjct: 241 VISP---EEMEVAVFTDEKQKREANIREIKDKLAEKFA--DNEEWLALIDEAVYQYQKKT 295

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   + TL    + Q 
Sbjct: 296 VRKMILKDHKRPDGRAINEIRPLAAEVDLIPRVHGSAMFTRGQTQICTITTLAPLSEAQK 355

Query: 363 VDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FPY
Sbjct: 356 IDGLDASETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFPY 415

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
            +R VSE  ES+GS+S A++C S+++LM AGVPI   VAGI+ GLV     DD+I+L+DI
Sbjct: 416 AIRTVSETFESNGSTSQASICASTMSLMAAGVPIKTAVAGISCGLVTGETDDDYIVLTDI 475

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + +  RL+IL+E M+K 
Sbjct: 476 QGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTREARLYILDEVMAKT 535

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R++L E+ P++  + I P +I +V+G  GK I  I+E+TG K++I DDG V I  +
Sbjct: 536 IAEPRMELSEYAPKIIQINIDPQKIGDVVGQRGKTINTIIERTGVKIDITDDGAVSICGT 595

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              ++  A +M+R IT   E  +I  G VV + +FGAF+ F   ++G+VHIS++S  R+ 
Sbjct: 596 DKEQMARAMDMVRIITTEFEAGQILTGTVVSIKEFGAFLEFAPGKEGMVHISKISKGRID 655

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           K  DV+K GD V V  L  D  G++  SMK V+Q
Sbjct: 656 KVEDVLKLGDVVKVVCLGKDKMGRVSFSMKDVEQ 689


>gi|118443480|ref|YP_878203.1| polynucleotide phosphorylase/polyadenylase [Clostridium novyi NT]
 gi|187610259|sp|A0Q0Q1|PNP_CLONN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118133936|gb|ABK60980.1| polyribonucleotide nucleotidyltransferase [Clostridium novyi NT]
          Length = 705

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/694 (41%), Positives = 441/694 (63%), Gaps = 5/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V      K+G DFFPL++ YQ
Sbjct: 3   HIFETTVAGRTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  I+G++++NP   + ++  LDL V  T+D
Sbjct: 123 LPNILAMNGASLALCLSSIPFTIPVGTVSVGLIDGEFIINPTSKQREESILDLTVCATKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
            V+M+E    ++ EDV+ DAI+FG  ECK + +   K+ +   K+   +   +  + +E+
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQQKVMEQYGKQKAELILHEIDADIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+ +   + ++ + +I +K  R K +D++K+K+   F  ++   N G+I      +Q +V
Sbjct: 243 EVREFAFDMVKEAMYITDKDSRNKAMDEVKEKVSEEFDEKYPD-NLGDIGEAIYKMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L++K R DGR  + +R +S++V LL RTHGS LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRNMILNEKRRPDGRYFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSISEGQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY 
Sbjct: 362 LDGIEEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGLV   D     IL+DI 
Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPMKRPAAGIAMGLVTSEDLEKEEILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A++ RL IL  ++  + 
Sbjct: 482 GLEDFFGDMDFKVAGTEKGITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNCID 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R ++ ++ P+V  M+I P +I++VIG GGK I  I+++TG K++I +DG+V + +   
Sbjct: 542 KPREEVSKYAPKVFTMSINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGSVFVTAEDY 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A  MI   +   +  ++Y G+V K+ +FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 ESGKKALAMIDGYSREVKEGEVYLGKVTKIANFGAFVEILPGKEGLVHISKLDVKRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            DVV  GD + VK+ + D  G++ LS K   +++
Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRVNLSRKDAIKDS 695


>gi|162447666|ref|YP_001620798.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
           laidlawii PG-8A]
 gi|187470930|sp|A9NGE2|PNP_ACHLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161985773|gb|ABX81422.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
           laidlawii PG-8A]
          Length = 715

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/713 (44%), Positives = 441/713 (61%), Gaps = 29/713 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVN 62
               E   AG+PL++E G IA+Q++GA +  YG+TVVL+T V     K GQ DFFPL V 
Sbjct: 3   KQVFETTLAGKPLRVEVGEIAKQANGAAMIYYGDTVVLSTAVA--KAKVGQTDFFPLMVI 60

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y E+ YA GKIPGG+ RRE RP+E E L SR+IDR +RPLF   Y+NE QV+  V+  D 
Sbjct: 61  YAEKQYAAGKIPGGFFRREGRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSDP 120

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           E+S  + +M+ +S AL +S +PF GP+ GA V  I+GQ+VLNP  ++     +DL V+GT
Sbjct: 121 EASSQMAAMLGSSIALEISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLIVAGT 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           +DA+ MVE  A Q+SE+V+L+AI+FGH   K +      + K    E +  +    +  +
Sbjct: 181 KDAINMVEAGAKQVSEEVMLEAILFGHEAIKELCAFQETIKKAFGVEKVEPELLSLNQAI 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS---------------SEHSS 285
            +E+     ++L  +  + +K  R   ID +K ++V++F                ++   
Sbjct: 241 FDEVFAYKGKELVKAVSLVDKQERYDVIDAIKDEVVAHFEQRNFWMTVDGKEVLDADQKK 300

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
               ++    + I  K VR ++ + KVR DGR  + +R +++ V LL RTHGS+LF RG 
Sbjct: 301 ELMNQVKVSLDRIVTKEVRRLITEDKVRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQ 360

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           TQA+ +VTLG+  + Q +D L        FM+HYNF P + GE  R GAP RREIGHG L
Sbjct: 361 TQALGIVTLGSLNENQIIDGLEQETVTKRFMLHYNFPPFSVGETGRYGAPGRREIGHGAL 420

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
             RA+  VLP   +FPY +R+VSEITES+GSSS AT+C  S+ALM AGVPI  PVAGIAM
Sbjct: 421 GERALLQVLPSEDEFPYAIRVVSEITESNGSSSQATICVGSMALMAAGVPIKAPVAGIAM 480

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           GL+ DG+ + ILSDI G EDH G MDFKVAGT  GITA+QMD+KI GI+  IM  AL+QA
Sbjct: 481 GLIMDGEHYSILSDIQGMEDHEGDMDFKVAGTKDGITALQMDIKIQGITTEIMKEALEQA 540

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GA 583
           ++GRLHIL+ M+ V+SE+R +L  F P+V+++ I PD+IR+VIG GGK+I  I+E     
Sbjct: 541 RKGRLHILSHMNTVISETRTELSAFAPKVKMIRINPDKIRDVIGAGGKIITQIIEDHNNV 600

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDF------GAF 636
           K++I+ DG V I  +  A +      I S+    +V ++Y+ +V + +MD       G F
Sbjct: 601 KIDIEQDGRVFIMHTDSAWLNKTAAYIESLVREAKVGELYEAKVTRLLMDKDGKKIQGVF 660

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
                  +GLVHIS+   ER       VK GD + VK++  D+RG++ LS K 
Sbjct: 661 AEIFPGTEGLVHISKWEKERTESLDGKVKVGDQILVKVVKIDERGRVDLSRKD 713


>gi|85860514|ref|YP_462716.1| polynucleotide phosphorylase/polyadenylase [Syntrophus
           aciditrophicus SB]
 gi|123752513|sp|Q2LWT4|PNP_SYNAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|85723605|gb|ABC78548.1| polyribonucleotide nucleotidyltransferase [Syntrophus
           aciditrophicus SB]
          Length = 705

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/696 (46%), Positives = 463/696 (66%), Gaps = 14/696 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
              E+AGR + ++TG +A Q+DGAV+  YG+TVV+ T V  ++ ++G DF PLTV+YQE 
Sbjct: 5   FSAEFAGRNISIKTGYVAGQADGAVMVIYGDTVVMVTAVSLKTAREGVDFLPLTVDYQEM 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GKIPGG+ +RE RP E EIL SR+IDRSIRPLF K Y  ETQ++  V+  D E+  
Sbjct: 65  TYAAGKIPGGFFKREGRPNEREILTSRVIDRSIRPLFPKGYCYETQLVATVLSVDSENDS 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQD-- 183
            V +++AASAAL +S +PF+GP+VG +V  ++GQ++ NP  L++++G L+L++ G +   
Sbjct: 125 DVAALLAASAALEISDIPFKGPIVGVRVGRVDGQFICNPSKLEQEKGDLNLYLVGRKVVP 184

Query: 184 ---------AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
                     ++M+E EA Q+ E+ V+  I FG    +PVIE   +L     K     ++
Sbjct: 185 GTEGRPYDVNLVMLEGEAQQVEEEHVIAGIDFGLECMRPVIELQDQLRSALGKPKREFEA 244

Query: 235 KDFS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +    L  E+S+     +R +  +  K  R   +D+++  ++   +++ +        +
Sbjct: 245 VEIDDALLAEVSEKAAVRMREAYRMSRKLDRHAALDEIRNSVLKAVTADEAGLRL-RTAA 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             E ++ ++VR V+L +K R+DGR    +R ISA+VG+L R HGS+LF RG+TQ++  + 
Sbjct: 304 ALEALEKRIVRDVILKEKQRIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLAALA 363

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  DEQ +D ++G +   F++HYNF P   GE   + +P RREIGHG LAR+A+ PV+
Sbjct: 364 LGTSSDEQRLDYVAGEETRSFILHYNFPPYCVGEARPLRSPGRREIGHGNLARKALMPVI 423

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPYT+RIVSEI  S+GSSSMATVCG  L LMD GVP+   VAGIAMGL+K+G+  
Sbjct: 424 PSPEEFPYTIRIVSEILSSNGSSSMATVCGGLLCLMDGGVPVKGVVAGIAMGLLKEGEQV 483

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +ILSDI GDEDH G MDFKV GT  GITAMQMD+KI GI+E+I+  AL QA+ GRL I++
Sbjct: 484 VILSDILGDEDHAGDMDFKVCGTSKGITAMQMDIKIDGINEDILRKALAQAREGRLFIID 543

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           ++   +SE R +L  + PR+  + + P+++R VIG GGK IR IV +TG  ++++DDGTV
Sbjct: 544 KILATISEPRKELSIYAPRITTVKVKPEKVRAVIGTGGKNIRQIVSETGVTIDVEDDGTV 603

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            IASS +     A  M+R +T+  EV KIY+G V KV+DFGAFV      +GL+HISQL+
Sbjct: 604 TIASSDMEASARAIAMVRWLTEDAEVGKIYRGTVKKVVDFGAFVEILPGTEGLLHISQLA 663

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            ERV K +D+V EGD V VK+L+ D +GKI+LS K 
Sbjct: 664 KERVNKVTDIVNEGDEVIVKVLEVDKQGKIRLSRKE 699


>gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132]
 gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans ND132]
          Length = 753

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/704 (43%), Positives = 457/704 (64%), Gaps = 8/704 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   V        + LETG+ ARQ+ GAV  + G+T VL T V    L + + FFPLT 
Sbjct: 6   FNATRVTARVGDLDITLETGKYARQASGAVTISSGDTTVLVTAVTQP-LAEDRGFFPLTC 64

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           NYQE  YA G++PG Y RRE  RP+E E L+SR+IDR IRPLF+K + +E Q+I  V+  
Sbjct: 65  NYQEMAYAAGRVPGNYFRREVGRPSERETLVSRLIDRPIRPLFAKGFTDEVQIIATVLSA 124

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFV 178
           D   +P V+++  ASAA  +S +PF GP+VGA+V Y++ ++VL P     E++ SL+L  
Sbjct: 125 DKRVNPDVLALTGASAACHISKMPFLGPIVGARVGYVDNEFVLYPSYKGIEERSSLNLIF 184

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T+DA++MVE   N +SED+V DA+ +GH + +P+ +   +L +      + +      
Sbjct: 185 AATRDAMVMVEGGGNFVSEDLVADALAWGHEQVRPLFDIQDELREKVGVPKLEVTPPQRD 244

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVSVF 295
           + + E + +++ +DL+ +   PEK VR    D  K+K     + +          +  + 
Sbjct: 245 EQVAEYLGEILTDDLKKALTTPEKMVRYAAKDAAKQKAKVAVAEKFPDDPSKLAAVEDIV 304

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D+  K+VR  ++ + +R+DGR++ TVR +S +VG+LQ+THGS+LF RG+T ++   TLG
Sbjct: 305 GDMTKKIVRERIVKEGLRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLG 364

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ  DSL G     FM+HYNF P   GE   +  PSRRE+GHG LA RA+ PV+P 
Sbjct: 365 STRDEQRYDSLLGDATKRFMLHYNFPPYCVGEARMLRGPSRREVGHGALAERALTPVIPD 424

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FP+T+R+VSEI ES+GSSSMA+VCG++L+LMDAGVPIS PVAGIAMGL K+GD + +
Sbjct: 425 PENFPFTIRVVSEIMESNGSSSMASVCGATLSLMDAGVPISDPVAGIAMGLCKEGDQYFV 484

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED LG MDFKVAGT  GITA+QMD+KI GI ++++  ALQQAK  R HIL+ M
Sbjct: 485 LTDILGDEDALGDMDFKVAGTRDGITAIQMDIKIAGIPQDVLKKALQQAKEARTHILDHM 544

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V+++ R +L    P+++++ I P++IR+VIG GGK I+ I  +T A ++I+D G + I
Sbjct: 545 AEVIAKPRPELSTLAPQMDVVYIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGKISI 604

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +LA +E A+EM+      PE  K YKG V K+++ GA V     ++G++H+SQL  E
Sbjct: 605 FAPTLASMEKAKEMVLYYDQKPEPGKNYKGVVRKILEVGALVEILPGQEGMLHVSQLDFE 664

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGKPI 698
           RV +  DVV+ G  VWVK +  +  G+I+LS K  + +  G+ +
Sbjct: 665 RVDRVEDVVQLGQEVWVKCIALEPGGRIRLSRKAWLMEQAGQEV 708


>gi|147669503|ref|YP_001214321.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
           BAV1]
 gi|187610294|sp|A5FQT2|PNP_DEHSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146270451|gb|ABQ17443.1| Polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
           BAV1]
          Length = 720

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/701 (40%), Positives = 453/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G++AR +D A+   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++N+ Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  +++ YING++VLNP   + + S LDL V 
Sbjct: 121 DKENDADIWGVVGASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQLDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            T+ AV+M+E  + ++ ED++++AI F H   + +I+   ++     KE + +   +   
Sbjct: 181 STRKAVVMIEAGSKEIPEDIMINAIEFAHKANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +++  ++  +K  +  +    +K  R   ++ L+ ++V+  S    ++ EG+I++ ++  
Sbjct: 241 EVKTAVAAFVKGRVNEALSHQDKTARENAVEGLQAELVAALSE---TFAEGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ GLL R HGS+LF RGDTQ + + TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ P+LP   +
Sbjct: 358 ESQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPILPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  +   +  ++
Sbjct: 418 FPYTIRLVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENGTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +I+  A+ QAK  R +IL+ M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  + I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKINIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              A  + A ++I  +T   E   IY G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 IDEASAKKAIKIIEDLTKDIEAGSIYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  D+VK GD + VK+++ D++G++ LS +V+      PI
Sbjct: 658 EKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPI 698


>gi|153855229|ref|ZP_01996395.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
 gi|149752228|gb|EDM62159.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
          Length = 695

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/695 (41%), Positives = 423/695 (60%), Gaps = 9/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T E+E AGRPLK++ GR+A+Q++GAVL  YG+T VL T       +DG DFFPL+V Y 
Sbjct: 3   KTFEMELAGRPLKVDVGRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  ERMYAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   +     + L V+ T++
Sbjct: 123 APELTAMLGAAIATTISDIPFDGPISTTQVGLVDGEFVFNPTAAQRAVSDMALTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ E  ++DAI   H   + VI  I  +   C K+    +S     +L  
Sbjct: 183 KVIMIEAGANEVPEQQMIDAIFAAHELNQKVIAFIDTIVAECGKQKHEYESCAVPEELFA 242

Query: 243 EMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++  E++ V+ F  +K  R + I  + +K+   F+   +      +       Q K
Sbjct: 243 AIKEIVTPEEMEVAVFSDDKQTREENIRVVTEKLEEAFAE--NEEWLAVLPEAVYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR+ + +R ++A+V L+ R HGS++F RG TQ   + TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGREIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICNICTLAPLSEAQ 360

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+FP
Sbjct: 361 KLDGLDEAETTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L+D
Sbjct: 421 YAIRTVSETFESNGSTSQASVCASSMSLMSAGVPIKAAVAGISCGLVTGDTDDDYLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + ++ RL+I++E M+K
Sbjct: 481 IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAKTRKARLYIIDEVMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R Q+GEF P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V I  
Sbjct: 541 AIDAPRAQVGEFAPKIVQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSICG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    +E A+++I  I    E  ++ +G+VV + DFGAF+ F   ++G+VHIS+LS ERV
Sbjct: 601 TDAKSMEEAQKLIHIIVTDFEAGQVLEGKVVSIKDFGAFLEFAPGKEGMVHISKLSKERV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +  DV+  GD V V  L  D  G+I  SMK V +
Sbjct: 661 NRVEDVLTLGDVVKVVCLGKDKMGRISFSMKDVAE 695


>gi|257066122|ref|YP_003152378.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           DSM 20548]
 gi|256798002|gb|ACV28657.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           DSM 20548]
          Length = 711

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/696 (41%), Positives = 433/696 (62%), Gaps = 4/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   +  E +  G+  ++  G+ A Q++G      G+T +L T V     ++G DFFPL 
Sbjct: 1   MVKTYKYESKL-GKDFEITIGKFAEQANGECYIKSGDTSLLVTAVASEKPREGIDFFPLI 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            ++QE+ YAVGKIPGG+L+RE + ++   LISR +DR +RPLF + Y N+ Q+I  V+  
Sbjct: 60  CDFQEKLYAVGKIPGGFLKREGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSM 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P  ++ + AS AL +S +PF+GPV    V  +  + ++NP  +E ++ SL+L V+
Sbjct: 120 DEDNLPDPLTTIGASIALGISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSSLELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G + A+ MVE  A ++SE  +L+A++    E   + + I  +     KE I +   + ++
Sbjct: 180 GKKGAINMVEAGAKEISEGEMLEAMLLALEEIGNISDFIQTIIDDIGKEKIEVAQVEETE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++S   +E+++ S    +K  R   I ++++     +  E+   +E EI    ++I 
Sbjct: 240 LDRKISADFEEEIKNSIRTTDKTEREDNIFNIEEAAKEKYLEEYPE-SEDEIHRRIDNIM 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++   K+R DGRD   +R +SA+ GLL R HGS LF RG TQ + VVTLG+  D
Sbjct: 299 KKEVRRMISIDKIRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPAD 358

Query: 360 EQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L+  + +  ++  YNF P   G+V  +  P RREIGHGRLA RA+ PVLP    
Sbjct: 359 VQIIDGLNREEIQKRYIHQYNFPPFCVGDVRPLRGPGRREIGHGRLAERALLPVLPDEKD 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+  S+GSSS A++CGS+L+LMDAGVPI+KPVAGIAMGL+K+ D   IL+D
Sbjct: 419 FPYTIRVVSEVLSSNGSSSQASICGSTLSLMDAGVPITKPVAGIAMGLIKEDDSISILTD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT  GITA+QMDMKI GI+  ++  +L  A   R+ IL+ +   
Sbjct: 479 IQGLEDHLGDMDFKVAGTRDGITALQMDMKIDGITREVLEESLNDAHSARMRILDVIESA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R  + ++ PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS 
Sbjct: 539 IEKPRSDISDYAPRLFTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASE 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A EMI+SI   P+   IY G+VV++M+FGAFV     ++GL+HISQ+   RV 
Sbjct: 599 DGESGKKAIEMIKSIVTDPKPGDIYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVE 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K  DV+  GD V VK+ + D +G+I LS K + +  
Sbjct: 659 KVEDVLSVGDEVKVKVTEIDRQGRINLSRKALLEKP 694


>gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 728

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/721 (43%), Positives = 460/721 (63%), Gaps = 27/721 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-LKDGQDFFPLTV 61
           +   EI+   G+ + +ETG++A+Q+DGAV+   G+T+V+ATVV  +      QD+FPL V
Sbjct: 2   IINKEIDLGQGKIISIETGKMAKQADGAVVVRQGDTMVIATVVSSKKTPPPNQDYFPLQV 61

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+  A GK PGG+ +RESRP+E EIL +R+IDR++RPLF   Y  ETQ+I+ V+  D
Sbjct: 62  EYREKYSAAGKFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLYETQIIVTVISSD 121

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
             +   V+  +AAS A+M+S +PF+ P+   +V  ING +V+NP ++E     LD+ + G
Sbjct: 122 QINDADVLGGLAASCAIMVSDIPFQNPMSEVRVGRINGLFVVNPDINELVNSDLDICIGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-PIVIDSKDFSK 239
           T++ + M+E E  ++SE  +LDAI FGH   + +    S++A   AK       +   ++
Sbjct: 182 TENTICMLEGEMKEISEAEMLDAIKFGHAAIRKLCALQSEIAAEVAKPIRPFTPTVIPAE 241

Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVS----YFSS----EHSSWNEGE 290
           L E +  + +  L+   + P +K  R  Q   +  +++     +F +    E  S +  +
Sbjct: 242 LTETVRVLCETRLKELAYTPLKKEERADQTAAIYHEIIESTIEHFKATCSSEEFSTDPAK 301

Query: 291 --------IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                   I      ++ +V+R ++LD   R+DGR  + VR IS ++G++ R HGS+LF 
Sbjct: 302 ALCINPHIIDEQIHMVEKRVMRHMILDDAKRLDGRALDQVRPISIELGIIPRAHGSALFT 361

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V +TLGT++D Q VD+L+ +    F +HYNF P   GE  R+G+  RREIGHG
Sbjct: 362 RGETQALVTITLGTKKDAQSVDNLTSSADKKFYLHYNFPPFCVGETGRLGSIGRREIGHG 421

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA R+I  V P   +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GI
Sbjct: 422 NLAERSIKMVAPTEEEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIKKPVSGI 481

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G  + +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+
Sbjct: 482 AMGLIKEGASYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALE 541

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+RGRLHIL EM K +  +R +L  F P++  + +P D I  +IG GG+ IR I E+TG
Sbjct: 542 QARRGRLHILGEMEKAIPSTRQELANFAPKLTSIKVPVDCIGMIIGKGGETIRSITEETG 601

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCG 641
           A++NIDDDGT+ IA S+     AA   I+++T  PEV  IY G+V  + D  GAFV F  
Sbjct: 602 AEINIDDDGTITIACSTSEGTNAALATIKNLTAKPEVGNIYIGKVRDIRDELGAFVEFLP 661

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-----RGKIKLSMKVVDQNTGK 696
             DGLVHIS++S+ERV K SD +K G+ V VKL+D        + +  LS+K  +Q+  K
Sbjct: 662 KTDGLVHISEISSERVTKVSDHLKIGEKVRVKLVDVRKDSRTGKTRFALSIKAAEQDAPK 721

Query: 697 P 697
            
Sbjct: 722 E 722


>gi|228477816|ref|ZP_04062444.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
           SK126]
 gi|228250508|gb|EEK09722.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
           SK126]
          Length = 741

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 433/700 (61%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E+ +AGRPL +E G++A+Q++GAV+  YG+T VL+T V  + +    DFFPL VNY
Sbjct: 3   KQTFEMTFAGRPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATA-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y    +++NP   + + SL DL V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSLLDLTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L A++ GH   + +++  + +     KE   ++  +  + L+
Sbjct: 182 EAINMVESGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELLQVDADLK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-----IVSVFE 296
            E+     + L  +  + EK  R      +K+++++ +    +   + E     +  + E
Sbjct: 242 VEIETAYYDQLAKAVQVEEKLAREAATQAVKEEVLASYQERFAEDEDKETILRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  F+ HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MSDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSV 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK  R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTRQGITALQMDIKISGITPAILEEALAQAKVARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R +L    P+++ + IP D+I+ VIG GG+ I  I+ +TG  ++ID++G V+I 
Sbjct: 542 SAIAEPRPELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I  A+ +I  +    +V ++Y   VV++  FGAFVH     D L+HIS+L+ ER
Sbjct: 602 SSDQDAINRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALIHISELAWER 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                DVVK G TV VK++  D++G+I  S+K +     K
Sbjct: 662 TEHVEDVVKVGGTVTVKIIKIDEKGRIDASIKALLPKPEK 701


>gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma
           phagocytophilum HZ]
 gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma
           phagocytophilum HZ]
          Length = 838

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/706 (49%), Positives = 469/706 (66%), Gaps = 13/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+ GAV+  YG T VLATVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKS-KEAVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+ +RE +P++ E LISR+IDRSIRPLF   + +E  V+ N++ +
Sbjct: 60  VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQ-GSLDLF 177
           D  S P  V+++ ASAAL +SG+PF  PV GA++ YI G+  Y+LNP  DE    +LD+F
Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKD 236
            + T  ++LMVE EA++L+E  +L A+ FGH  C+ +I+ I + A+   K  P      D
Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFVPCD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG------- 289
            S + + +    KE   V+    EK  R  ++D ++  +      +  S +EG       
Sbjct: 240 LSTIIDSIGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIAQ 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           +IV   +  +  +VR  +L+ K R+DGR  + +R+I  +V L+ + HGS+LF RGDTQA+
Sbjct: 300 DIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQAL 359

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V+  LGT +DEQ VD   G +R  F++HYNF P A GE S +  P RREIGHG+LA RAI
Sbjct: 360 VITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRAI 419

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           HPVLP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+
Sbjct: 420 HPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKE 479

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD + ILSDI GDED+LG MDFKVAGT  GITA+QMDMK+ GI   ++  AL QAK GR 
Sbjct: 480 GDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGRF 539

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+ +M +V+ ESR  + E  PR+E M I   +I+NVIG GGK +R I E+TGAK+ I  
Sbjct: 540 FIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEISQ 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV I +     IE+A++MI  I   PEV KIY G+V ++  +GAFV F GAR GLVHI
Sbjct: 600 DGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLVHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S++  E +   +DV+  GD V V ++D D +  I+LSM+ +DQ TG
Sbjct: 660 SEIRNEHINAVADVLAVGDKVKVLVIDMD-KDHIQLSMRRIDQETG 704


>gi|225572738|ref|ZP_03781493.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039911|gb|EEG50157.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
           10507]
          Length = 745

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/701 (39%), Positives = 427/701 (60%), Gaps = 15/701 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A+Q++GA L  YG+T VL+T       ++G DFFPL+V Y+
Sbjct: 50  KSFSMELAGRTLTVDIGRVAKQANGAALMHYGDTTVLSTATASDKPREGIDFFPLSVEYE 109

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 110 EKMYAVGKIPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLSNMVMSVDPEC 169

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P + +M+ ++ +  +S +PF+GP    QV  ++G++++NP L + +   L L V+ T++
Sbjct: 170 NPEIPAMLGSAISTCISDIPFDGPCATTQVGLLDGEFIINPSLAQKKISDLQLTVASTRE 229

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E  AN+L ED +++AI   H+  + +I+ I K+ + C KE    +S     + EE
Sbjct: 230 KVIMIEAGANELPEDKMIEAIYLAHDVNQEIIKFIDKIVEECGKEKHSYES---CAVPEE 286

Query: 244 MSQMIK-----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           + Q IK     E++ V+ F  EK +R + I  +  K+   F +++  W E  +       
Sbjct: 287 LFQAIKEIVPPEEMEVAVFADEKQIRDENIRQITDKLEEKF-ADNEEWLEV-LGEAIYQY 344

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   V TL    
Sbjct: 345 QKKTVRKMILKDHKRPDGRAINEIRPLAAEVDIIPRVHGSAMFTRGQTQICTVTTLAPLS 404

Query: 359 DEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   
Sbjct: 405 EAQRLDGLDEFETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEE 464

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+++
Sbjct: 465 EFPYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIRKPVAGISAGLVTGETDDDYLV 524

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +IL E 
Sbjct: 525 LTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKEAREYILTEV 584

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M K + E R  +G + P++  + I P +I +V+G  GK I  I+++TG K++I DDG V 
Sbjct: 585 MEKCIHEPRTSVGPYAPKIVQIQIDPQKIGDVVGQRGKTINTIIDETGVKIDITDDGAVS 644

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   +  +++ A  +I+ IT   E  +++ G+VV + +FGAFV F   ++G+VHIS++  
Sbjct: 645 VCGLNQKDMDEAVRLIKVITTDFEAGQVFTGKVVSIKEFGAFVEFAPGKEGMVHISKICK 704

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ER+ +  DV+  GD V V  L  D  G+   SMK V +   
Sbjct: 705 ERINRVEDVLTLGDKVKVVCLGKDKMGRFSFSMKDVPKEEA 745


>gi|332298592|ref|YP_004440514.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
           DSM 12168]
 gi|332181695|gb|AEE17383.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
           DSM 12168]
          Length = 699

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/689 (44%), Positives = 456/689 (66%), Gaps = 7/689 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  V  +   + L LETGR+A+Q++GAV A +G + V+AT     + ++G DF P+TV+Y
Sbjct: 2   VQRVTYKIGDQELILETGRLAKQANGAVYAQFGGSAVIATACASGTAQEGLDFVPVTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF   +  E Q++   +  D  
Sbjct: 62  NEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEVAFGREIQIVPTCVSSDQI 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P ++++VA+SAA+++S +PF GP+ G +V Y++G YVLNP   + ++  L++ V+GT 
Sbjct: 122 NPPDMLAVVASSAAVVISDIPFNGPIAGVRVAYVDGDYVLNPTYAQIEKAELEIVVAGTA 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           D   MVE  AN++SEDV+L A+         +    ++L K+  KE + +     + + +
Sbjct: 182 DGFTMVEGGANEVSEDVMLGALAKAQEFITAMCGLQNELRKLAGKEKLPLCPVTVALENK 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300
           + M       +  +CF+  K++R + I  +K  + + ++++  +  +     ++FED++ 
Sbjct: 242 DAMLAEAMPRMEEACFVKGKHLRHEAIAAVKADLSAKYAAQLENETQMKLFNALFEDMEY 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            ++R  +LDK VR+DGR +E +R IS ++ +L R HGS++F RG+TQ++ V TLGT  DE
Sbjct: 302 NILRKSILDKGVRVDGRGTEDIRPISCEIDVLPRPHGSAIFTRGETQSLAVATLGTALDE 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D + G +R  F++HYNF P + GEV RMG   RREIGHG LARR++ P++P    FP
Sbjct: 362 QVYDDIDGDRREHFILHYNFPPYSVGEVGRMG-TGRREIGHGNLARRSLEPMVPSREAFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---DFIILS 477
           YT+R+VSEI ES+GSSSMA+VCG +L ++ AGVP+ KPVAGIAMGL+ +GD    + ILS
Sbjct: 421 YTIRVVSEIMESNGSSSMASVCGGTLCMLAAGVPMKKPVAGIAMGLITEGDKYEKYAILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G+EDHLG MDFKVAGT  GIT  QMD+KI G++  IM  AL QAKRGRLHIL  M++
Sbjct: 481 DILGEEDHLGDMDFKVAGTADGITGFQMDIKIAGVTTEIMQKALAQAKRGRLHILGIMNQ 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S+   ++ E+ P++E M I  D+I  +IG GGK ++GI    G  +N DDDGTV I  
Sbjct: 541 TISKPAAKISEYAPKIETMKIDVDKIGALIGPGGKTVKGISALYGVTINTDDDGTVTIYG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +    +AA+  +++I + PEV  +Y+G V ++MDFGAFV     ++GL HIS+LS +RV
Sbjct: 601 KNGKSTDAAKTAVKAIVEDPEVGTVYQGTVKRIMDFGAFVEILPGKEGLCHISKLSRKRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            K +DVV EG  + VKLL+ D  G++ LS
Sbjct: 661 EKVTDVVSEGQQIPVKLLEIDKMGRLNLS 689


>gi|283781766|ref|YP_003372521.1| polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
           6068]
 gi|283440219|gb|ADB18661.1| Polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
           6068]
          Length = 744

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/699 (40%), Positives = 433/699 (61%), Gaps = 7/699 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              VE +        ETG +A+Q+  AVL  YG+TVV+         + G DFFPLT +Y
Sbjct: 2   KVRVEKQIGNHTFSFETGYLAKQAAAAVLCQYGDTVVMNAA-ASGPGRPGIDFFPLTCDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ERT A GK PGG+++RE RPT  E L SR++DR IRPLF K +++E Q+   V+  D +
Sbjct: 61  RERTAAAGKFPGGFIKREGRPTTKETLTSRLVDRPIRPLFPKGFRDEVQIQSIVLSSDKQ 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +   V++M  A  AL +S LPF GP+   +V  INGQ+V  P  D+ +   LDL VSG++
Sbjct: 121 NDGDVLAMNGAGCALFISALPFNGPIASVRVGRINGQFVAFPTHDDLETSDLDLIVSGSE 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             V M+E  A +L E+ + +AI+F HN  + +     + A           +    +L E
Sbjct: 181 REVAMIEGFARELPENDMFEAILFAHNVIRDICALQREFAAKIGVNKEPFPAPAPDELFE 240

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQ 299
            +     E+L+ +     K+ R + +  +K   ++ F  + ++ +      + +VF D++
Sbjct: 241 RLKSRFFEELKTARQTVGKHARAEAVKAVKNAAIAEFIPDPTAPDAIKPEVLKTVFHDLE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR+++L   +R DGRD+ T+R+I  +V +L R HGS++F RG+TQA++ +TLGT +D
Sbjct: 301 ELAVRSLILS-GIRSDGRDNRTLRNIECEVDVLPRVHGSAVFQRGETQALITITLGTAKD 359

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ VD L       FM+ YNF   + GEV  +  P RREIGHG LA R+++PVLP   +F
Sbjct: 360 EQRVDGLFDEYAKKFMLDYNFPSFSVGEVRPIRGPGRREIGHGALAERSVNPVLPAPEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSD 478
           PYT+R++S+I ES+GSSSMA+VCG++L LM AGVPIS PVAGI++GLV++ + ++++L+D
Sbjct: 420 PYTIRVISDIMESNGSSSMASVCGATLGLMAAGVPISNPVAGISVGLVRESEQNWVLLTD 479

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDH G MDFK+AGT +GIT +Q+D+K+ GIS +I+    +Q++  R+ IL +M  V
Sbjct: 480 IIGDEDHFGDMDFKIAGTQNGITGIQLDLKVEGISTDIIRATFEQSREARIQILRKMLTV 539

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   + ++  + PR+    I P++I  +IG GGK+IRGI E TG  + +DD G V IASS
Sbjct: 540 IPRPKDEISPWAPRLIRTQIDPEKIGMLIGPGGKMIRGIQEATGCVIEVDDSGVVTIASS 599

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    EAA   + ++T   ++ KIY G++  + DFGAFV     RDGLVHIS+LS   V+
Sbjct: 600 NREWAEAALAQVEAVTATVQIGKIYNGRITSIKDFGAFVEIIPGRDGLVHISELSGGFVS 659

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             ++V + GD + V ++D D+  ++KLS +   +  G P
Sbjct: 660 SVAEVCRVGDEMKVLVIDVDEHDRVKLSRRKAHEELGLP 698


>gi|168187902|ref|ZP_02622537.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
           str. Eklund]
 gi|169294241|gb|EDS76374.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
           str. Eklund]
          Length = 705

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/694 (41%), Positives = 440/694 (63%), Gaps = 5/694 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V      K+G DFFPL++ YQ
Sbjct: 3   HIFETTVAGRTLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDKAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  ++G++V+NP   + ++  LDL V  T+D
Sbjct: 123 LPNILAMNGASLALCLSSIPFTTPVGTVSVGLVDGEFVINPTSKQREESILDLTVCATKD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+M+E    ++ EDV+ DAI+FG  ECK +     K+ +   K+   +   +    +E+
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIANFQQKVMEQYGKQKAELILHEIDANIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+ +   + ++ + +I +K +R + ID++K+K+   F+ ++   N  +I      +Q +V
Sbjct: 243 EVKEFAFDMVKEAMYITDKDLRNRAIDEVKEKVAEEFNEKYPD-NLADIGEAIYKMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L++K R DGR  + +R +S++V LL RTHGS LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRNMILNEKRRPDGRSFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY 
Sbjct: 362 LDGIEEETLKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGLV   D     IL+DI 
Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLVTSEDLEKEEILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A++ RL IL  ++  + 
Sbjct: 482 GLEDFFGDMDFKVAGTEKGITAIQVDTKIKGLSNDCIKKAITNARKARLTILEVINNCID 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R ++ ++ P+V  M+I P +I++VIG GGK I  I+++TG K++I +DG+V + +   
Sbjct: 542 KPREEVSKYAPKVFTMSINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGSVFVTAEDY 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A  MI   +   +  ++Y G+V K+ +FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 ESGKKALAMIDGYSREVKEGEVYLGKVTKIANFGAFVEILPGKEGLVHISKLDVKRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            DVV  GD + VK+ + D  G++ LS K   +++
Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRVNLSRKDAIKDS 695


>gi|326335448|ref|ZP_08201635.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692214|gb|EGD34166.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 725

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/706 (40%), Positives = 435/706 (61%), Gaps = 17/706 (2%)

Query: 1   MFDVHTVEI-EWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      EI E   GR + +ETG++A+Q+DGAV+   G  ++LATVV ++   +G DF P
Sbjct: 1   MIPEVKKEIIELGDGRTISIETGKLAKQADGAVVVRMGNAMLLATVVANKEPGEGVDFLP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RESRP++ EIL  R++DR +RPLF + Y  E QV+I +M
Sbjct: 61  LTVDYREKFAAAGRFPGGFFKRESRPSDQEILTMRLVDRVLRPLFPEEYYCEVQVMIQLM 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLF 177
            HD    P  ++ +AASA L +S +PF+GP+   +V  INGQ+V+NP   E  Q  +D+ 
Sbjct: 121 SHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRINGQFVINPNAKELTQSDMDIM 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           V  +++ V MVE E +++SE  + DAI F H   K  IEA  +L     K   V+ + + 
Sbjct: 181 VGASKEFVAMVEGEMDEVSEKDMADAIRFAHEAIKTQIEAQERLKAKVGK---VLRAYEV 237

Query: 238 SKLEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            +  +E++Q I +     C+        K+ R  + D +K++  + F+ E        + 
Sbjct: 238 PQENKEVAQKIYDFCYDKCYAIAKENTTKHERNDKFDAVKEECKALFTEEELEEYSALVN 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             F   Q + VR ++L++ +R+DGR+++ +R I  +VG L   HGSS+F RG+TQA+  V
Sbjct: 298 KYFSKAQKEAVRNLILNEDIRLDGRNTKQIRPIWCEVGYLPSPHGSSIFTRGETQALATV 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  +   +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  +
Sbjct: 358 TLGTSREANVIDIPSEQSEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRM 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P     PYT+R+VSEI ES+GSSSMATVC  +LALMDAG+ + KPV+GIAMGL+ DGD 
Sbjct: 418 IP--EDCPYTVRVVSEILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDK 475

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G++  I+  AL+QA+ GR++IL
Sbjct: 476 YAVLSDILGDEDHLGDMDFKVTGTKDGITACQMDIKIKGLTYEILEKALEQAREGRMYIL 535

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +++  ++     +    P++  + +P + I   IG GGK I+ + E+T   + +++ G 
Sbjct: 536 GKITDTIAVPNPTVKPHAPKIIRLEMPKEYIGAFIGTGGKNIQDLQERTKTTIVVEELGE 595

Query: 593 ---VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              V+I  +    I+ A + +  ++  P   +IYK +V +++DFGAFV F   +D L+H+
Sbjct: 596 LGIVEILGTDTEGIQEAVDAVYHVSFEPVEGEIYKVRVARLVDFGAFVEFVPGKDSLLHV 655

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           S+++ ERV K SDV+KEGD + VK L  D +  K ++S K +    
Sbjct: 656 SEIAWERVEKPSDVLKEGDIIEVKYLGIDPKTKKTRVSRKALLPRP 701


>gi|116328709|ref|YP_798429.1| polynucleotide phosphorylase/polyadenylase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|122283506|sp|Q04ZJ9|PNP_LEPBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116121453|gb|ABJ79496.1| Polyribonucleotide nucleotidyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 696

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/695 (43%), Positives = 434/695 (62%), Gaps = 6/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            HT+  ++    + LETG  A+Q+ GAV+   G  V+LATV      K+GQDFFPLT  Y
Sbjct: 2   THTISGQYGRDTIVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y  E Q+ + V+  D +
Sbjct: 62  TEKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            S    ++ AAS AL +S +PF GP+ GA++  ING+ +LNP   E     LDL V+GT+
Sbjct: 122 VSVAGHALNAASVALTISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLVVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKL 240
             ++M+E EA +LS + +L A+ F        +    + AK     K  + + ++D  +L
Sbjct: 182 THIVMIEGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYAKQIGVVKREVKLKARDV-EL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
             ++ +     L  +   P+K VR K+I ++ K +V +F       ++  +I +   +++
Sbjct: 241 LAKVKEYAFAKLTAANQTPDKTVRNKEISNVNKDVVEFFKQTVEDADKIKDIKTYLHELE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L++ VR DGR  + +R IS ++  L   HGSS+F RG TQ++ VVTLGT  D
Sbjct: 301 YEIVREQVLNQGVRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  ++L G +   FM+HYNF   + GEV R   P RREIGHG LA RA+  VLP++ +F
Sbjct: 361 NQRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-GDDFIILSD 478
           PY +R+VSEI ES+GSSSMA+VC  SLALM AGVPI   VAGIAMGL  D    + +LSD
Sbjct: 421 PYVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVAGIAMGLFSDSSGKYAVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+G EDH G MD K+AGT  GITA QMD+K+ G+S +++    +QA+RGR HIL+ M K 
Sbjct: 481 IAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKH 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S++   L    PR+ +  IP D+I  +IG GGK +RGI E TGA++ I+DDG V I+ S
Sbjct: 541 ISKASDSLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISGS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    E A +M+       EV KIY+G+V ++ DFGAFV     ++GL HIS++  +RV 
Sbjct: 601 NQESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              D+VKEGD + VK+L+ D  GKI LS K   + 
Sbjct: 661 SVKDIVKEGDIIRVKVLNVDKTGKIDLSRKDALEE 695


>gi|15834850|ref|NP_296609.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Nigg]
 gi|270285016|ref|ZP_06194410.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Nigg]
 gi|270289041|ref|ZP_06195343.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Weiss]
 gi|301336414|ref|ZP_07224616.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           MopnTet14]
 gi|81548983|sp|Q9PL77|PNP_CHLMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|7190270|gb|AAF39102.1| polyribonucleotide nucleotidyltransferase [Chlamydia muridarum
           Nigg]
          Length = 693

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/693 (43%), Positives = 443/693 (63%), Gaps = 4/693 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ++GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQANGAVLVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + GK  GG+L+RE RP+E EILISR+IDRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGKTSGGFLKREGRPSEKEILISRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVEGKWVVNPTKDELDASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   KE  +    D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQKYIAKICDAIEAWQKAIGKEKQLSAVLDLPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           ++  +S  I+E    +    ++    +   +L++ +V+    E S ++   + + F++ +
Sbjct: 241 VQNVVSNFIREKFEKALSFRDRDALEQVSKELEESVVANLVQEESDFSLLNVKAAFKNAK 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +  +R ++ D  +R+DGR +  +R IS +V  L RTHGS LF RG+TQ++ V TLG    
Sbjct: 301 SNQMRALIRDLGIRVDGRSTTEIRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESM 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+ ++F
Sbjct: 361 AQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEASRF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+ S ITES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAMGL+ D D  I+LSDI
Sbjct: 421 PYTVRVESNITESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLILDQDKAIVLSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG EDHLG MDFKVAGT+ GITA QMD+K+ GI+  IM  AL QAK+GR HILN M++V+
Sbjct: 481 SGIEDHLGDMDFKVAGTEEGITAFQMDIKVEGITHEIMEQALAQAKQGRSHILNLMTQVM 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S     +  + PR+E M I   +I  VIG GGK IR I+E++GA+V+I+D+G + I++++
Sbjct: 541 SSPNDSVSRYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDNGLINISANT 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I+ A+E+I  +T   EV KIY G+V  V+ FGAFV     ++GL HIS+LS ++V  
Sbjct: 601 QESIDKAKELIEGLTGEVEVGKIYNGRVTSVVAFGAFVEVLPGKEGLCHISELSKQKVDN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            +D VKEGD + VKLL  +++G++KLS K   +
Sbjct: 661 VADFVKEGDRLAVKLLSINEKGQLKLSHKATLE 693


>gi|160880894|ref|YP_001559862.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           phytofermentans ISDg]
 gi|187610260|sp|A9KNK6|PNP_CLOPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160429560|gb|ABX43123.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           phytofermentans ISDg]
          Length = 698

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/699 (40%), Positives = 423/699 (60%), Gaps = 14/699 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A Q++GA    YG+TVVL+T       ++G DFFPL+V Y+
Sbjct: 3   KSFSMELAGRTLSVDVGRVAAQANGAAFMHYGDTVVLSTATASDKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGK+PGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D + 
Sbjct: 63  EKLYAVGKVPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ ++ ++ +S +PF+GP    QV  ++G+ V NP   +     L L V+ T+D
Sbjct: 123 SPELTAMLGSAISVAISDIPFDGPCATTQVGLVDGELVFNPTAAQKAVSDLALTVASTRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFS 238
            V+M+E  AN++ ED +L+AI   H   + VI+ I K+     KE        I  + F+
Sbjct: 183 KVIMIEAGANEVPEDKMLEAIFAAHEVNQEVIQFIDKIVAEFGKEKHGYISCEIPEEMFA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++E ++    E +  + F   K VR + I ++K K+   F   +  W    I       
Sbjct: 243 AIKEVVTP---EQMEEAVFTDVKQVREENIREIKNKLAEVFEESNPEW-LHLIDEAVYKY 298

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR+   +R ++A+V +L R HGS +F RG TQ + V TL    
Sbjct: 299 QKKTVRKMILKDHKRPDGREIHQIRRLAAEVDMLPRVHGSGMFTRGQTQILTVTTLAPLS 358

Query: 359 DEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L    +   +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A
Sbjct: 359 EAQKLDGLDEAEKSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEA 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+S A+VC S+L+LM AGVPI K VAGI+ GLV     DD+++
Sbjct: 419 EFPYAIRTVSETMESNGSTSQASVCASTLSLMAAGVPIKKQVAGISCGLVTGDTDDDYLV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K  R +I+NE 
Sbjct: 479 LTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRAIIEEAIRRTKEAREYIINEV 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+  ++E R ++G++ P++  + I P +I +V+G  GK I  I+EQTG K++I+D+G V 
Sbjct: 539 MTPAIAEPRTEVGKYAPKIIQIQIDPQKIGDVVGQRGKTINAIIEQTGVKIDINDEGAVS 598

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    ++ A  MIR+I    E  ++++G+V+ + +FGAF+ F   ++G+VHIS++S 
Sbjct: 599 VCGTDKDMMDKAINMIRTIVTEFEEGQVFEGKVISIKEFGAFLEFAPGKEGMVHISKISK 658

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           ER+    DV+  GD V V  L  D  G+I  S+K   + 
Sbjct: 659 ERINHVEDVLTLGDVVKVVCLGKDKMGRISFSIKDYKEE 697


>gi|15605577|ref|NP_220363.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|81345334|sp|O84849|PNP_CHLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3329314|gb|AAC68439.1| Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436398|gb|ADH18572.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/9768]
 gi|296437329|gb|ADH19499.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/11222]
 gi|296438257|gb|ADH20418.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/11074]
 gi|297140758|gb|ADH97516.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/9301]
 gi|297748970|gb|ADI51516.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           D-EC]
 gi|297749850|gb|ADI52528.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           D-LC]
          Length = 695

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/695 (43%), Positives = 439/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+T++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             SD VKEGD + VKLL  +++G++KLS K   ++
Sbjct: 661 NISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695


>gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
 gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
          Length = 703

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/699 (42%), Positives = 433/699 (61%), Gaps = 8/699 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             TVE ++AGR L + TG +A+Q+ GAV   YGET+V      +   + G DFFPLT +Y
Sbjct: 2   KVTVERQFAGRTLSITTGELAKQAAGAVTIQYGETMVFVAA-QNGPSRPGTDFFPLTCDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER  A GK PGG+++RE RPT  E+L SR+ DR IRPLF + Y  E QV+ NV+  D  
Sbjct: 61  RERLAAAGKFPGGFIKREGRPTLREVLTSRLTDRPIRPLFPEGYIEEVQVMSNVLASDGV 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+S++ ASAAL L+ +PF+GP+   +V  I+G+++L P  ++     LDL V+GT+
Sbjct: 121 NDPDVLSIIGASAALCLAPVPFQGPLAAVRVGLIDGEFILFPTQEQIADSELDLVVAGTE 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
            +VLM+E    QL ED + DAI+FGH     + +   +L     +E  V+ + + +  E 
Sbjct: 181 KSVLMIEGFGKQLPEDQMADAIMFGHRTIVELCQLQLELVAKSGRERFVLPAPEANPFEA 240

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVSVFED 297
            + +     LR       K  R  Q    KK++++ F    +        + +  + F  
Sbjct: 241 ILLEKAYAKLREVKQSSVKKERSSQTSAYKKELLAEFFPNDAETTAAGLTKAQFFAAFYA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ K VR ++LD  VR+DGR  + +R +S    +L R HGSSLF RG+TQ++  VTLGT 
Sbjct: 301 VETKAVRDLILD-GVRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTI 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q V+ L G +   FM+ Y F P + GE   +  P RRE+GHG LA R++  VLP   
Sbjct: 360 RDVQRVEGLFGEEAKAFMLDYYFPPYSVGECKPLRGPGRRELGHGALAERSVASVLPSPE 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R++S+I ES+GSSSMA+VC ++LALMDAGVPIS+PVAGI++GLVK  D FI+L+
Sbjct: 420 KFPYTIRVISDILESNGSSSMASVCSATLALMDAGVPISQPVAGISIGLVKSADRFILLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDH G MDFKVAGT  G+T +Q+D+KI GISE I+   L+QAK+ R+ +L  M  
Sbjct: 480 DIMGDEDHFGDMDFKVAGTQKGVTGIQLDLKIDGISEEIVRATLEQAKKARIELLKTMLS 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R ++    PR+    I P +I  +IG GGK IR I EQTGA ++I+DDGTV IAS
Sbjct: 540 AIRRPRSEISTHAPRLLRTKIDPSKIGLLIGPGGKNIRAIQEQTGATIDIEDDGTVVIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS    E A   + +I +  +V ++Y G V  + DFGAF+     +DGL HIS+LS   V
Sbjct: 600 SSSVGAEDALARVEAIAEEIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELSDGFV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
              ++VV+ G+ + VK++  D++ ++KLS K V  +  +
Sbjct: 660 KNVNEVVQVGEKIQVKVIAIDEQNRVKLSRKAVLADEAE 698


>gi|255317984|ref|ZP_05359230.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           6276s]
          Length = 695

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/695 (43%), Positives = 439/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+T++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LASPKETVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             SD VKEGD + VKLL  +++G++KLS K   ++
Sbjct: 661 NISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695


>gi|282855612|ref|ZP_06264926.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
           W5455]
 gi|282586542|gb|EFB91796.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
           W5455]
          Length = 751

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/695 (40%), Positives = 436/695 (62%), Gaps = 6/695 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  +   G+ L  +TG++A+Q++ AV+A++GET +L T       + G DFFPL V+++
Sbjct: 3   KTYTLNVGGQDLVFKTGKVAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA GKIPGGY++RE RP++  IL +R++DRSIR LF    +N+  V+  V+  D ++
Sbjct: 63  ERYYAAGKIPGGYIKREGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183
             +++++ AAS AL +S +P+ GPV   ++  I+G+ V+NP  D   + +LDL V+G   
Sbjct: 123 PANILAINAASMALTISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTLDLTVAGHAG 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEE 242
            + MVE  A ++ E+++++A+    +E K ++    ++     +   V+ +     +++ 
Sbjct: 183 GITMVEAGAREVPEELLVNALQTAQDEIKKIVAFQLQVRAEIGQPKAVLPAPLAIEEIDR 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +   ++E+   +  I  K  R   I  L +K  ++F+  ++   E  I    E +    
Sbjct: 243 WVKDNLREETAKAVMIHGKKERGAAISALVEKTTAHFADLYADA-ESYIAGAVESLVKST 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR-EDEQ 361
           +RT+    K+R DGR ++ +R IS +V +L + HGS+LF RG+TQA+VV TLG   ED+Q
Sbjct: 302 MRTITARDKIRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQ 361

Query: 362 YVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L   +    F++HYNF P + GE+  M  P RREIGHG LA RA+ P++P   +FP
Sbjct: 362 IIDGLKLDEPNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHGALAERALAPLVPGEEEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VS+I ES+GSSS A++CG SL++M AGVP+ K VAGIAMGL+K+GDD +IL+DI 
Sbjct: 422 YVVRVVSDILESNGSSSQASICGGSLSMMAAGVPMKKHVAGIAMGLIKEGDDMVILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  G+TA+QMD K GGI+  I+  AL QA + R+ IL+ M   + 
Sbjct: 482 GLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILSRALMQAHQARMQILDAMETCIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E    L    PR+  M I  D+IR+VIG GGKVIR IV+++GAK+N++DDG+V I + S 
Sbjct: 542 EPAP-LSPNAPRIFTMNIDVDKIRDVIGPGGKVIRNIVQESGAKINVEDDGSVYICAVSP 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +E AR+MI  I    E  + + G V ++M FGAFV     ++GL+HIS++ST+ + K 
Sbjct: 601 DSVEKARQMIHDIVREVEAGEAFYGTVTRLMAFGAFVEVLPGKEGLLHISEISTKHIGKV 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            DV   GD V V++ + DD+ +I LS + +  +  
Sbjct: 661 EDVFAPGDHVIVEVKEIDDQNRINLSRRRLLADPA 695


>gi|255311683|ref|ZP_05354253.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           6276]
          Length = 695

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/695 (43%), Positives = 439/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+T++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LTSPKETVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             SD VKEGD + VKLL  +++G++KLS K   ++
Sbjct: 661 NISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695


>gi|242278471|ref|YP_002990600.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121365|gb|ACS79061.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio salexigens
           DSM 2638]
          Length = 750

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/704 (42%), Positives = 446/704 (63%), Gaps = 8/704 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F   +V        + LETGR+A Q++G VL   G TVVL T V   +     DFFPLT 
Sbjct: 5   FTPTSVTGHVGNLDITLETGRMANQTNGTVLIKSGGTVVLVTAVGMPADGPR-DFFPLTC 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           NY ERTYA G+IPGGY RRE  RP++ E L+SR++DR IRP+F K Y++E QVI  V+  
Sbjct: 64  NYLERTYAAGRIPGGYFRREVGRPSDRETLVSRLMDRPIRPMFPKAYRDEVQVIATVLSA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFV 178
           D +++P V++M  ASAAL +S LPF GPV  A+V  ++ ++VL P      +Q  L+L  
Sbjct: 124 DTDTNPDVLAMTGASAALHISDLPFNGPVAAARVGLVDNEFVLYPTYKGVAEQSDLNLVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDF 237
           + T+DAV+MVE  +  LSE+ + +A+ +GH +  P+ +    L +   +  + + + +  
Sbjct: 184 AATRDAVIMVEGSSQFLSENTIAEALEWGHEQMAPMFDLQDALREKVGRPKLEVSEPEKD 243

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVSVF 295
            ++   +++    DL  +  IP K  R     ++K    +    +     E    +    
Sbjct: 244 EEVITLVTENFSADLDKALTIPGKLDRKAAKSEVKASAKAMIEEKFPEEPERAKAVGDAM 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++ K+VR  ++++ VR+DGRD  TVR++S +V  L  THGS+LF RG+T A+ V TLG
Sbjct: 304 ADLEKKIVRKRIVEQGVRIDGRDLTTVRNLSMEVSNLPMTHGSALFRRGETSALAVCTLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  DEQ  ++L G     FM+HYNF P   GE   + APSRREIGHG LA RA+ PVLP+
Sbjct: 364 STRDEQRFETLIGEDTKRFMLHYNFPPYCVGEAKFLRAPSRREIGHGTLAERALRPVLPK 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FP+T+R+VSE+ +S+GSSSMATVCG++L+LMDAGVPIS PVAGIAMGL ++GD++ +
Sbjct: 424 AEDFPFTMRVVSEVMDSNGSSSMATVCGTTLSLMDAGVPISAPVAGIAMGLCQEGDEYFV 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED LG MDFKVAGT+ GITA+QMD+KI GI  +++  AL QAK  R  IL++M
Sbjct: 484 LTDILGDEDALGDMDFKVAGTEEGITAIQMDIKISGIPADVLRRALAQAKDARQIILDDM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + + E R +L    P++E++ I P++IR++IG GGK I+ I  +T A ++I+D G V I
Sbjct: 544 KETMPEPRAELSVNAPQMEVLQINPEKIRDLIGPGGKNIKAITAETSADIDIEDSGKVSI 603

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +L  ++   EM++      E+ K Y G V K+++ GA V      +GL+HISQ+  E
Sbjct: 604 FAPTLESLKKTVEMVQYYDQTAELGKNYVGTVKKILEIGAIVEILPGLEGLLHISQIDVE 663

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGKPI 698
           R+A+ +DVV+ G  + VK+++    G+I+LS K  + +  G+ +
Sbjct: 664 RIAEVTDVVQLGQEITVKVVEVQPNGRIRLSRKAWLMEQAGQEV 707


>gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
 gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
          Length = 716

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/695 (39%), Positives = 424/695 (61%), Gaps = 6/695 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + E AGRP  +E G+ A  ++ A L  YG+T V   +      +DG DFFPL+V+
Sbjct: 12  NHKIFKTEIAGRPFSIEVGKTAELANAAALVRYGDTTVHVAICVSPRPRDGVDFFPLSVD 71

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++E+ YAVG+IPG ++RRE RP+   +L SR+IDR IRPLF   ++N+  +   VM  D 
Sbjct: 72  FEEKLYAVGRIPGSFMRREGRPSLPAVLASRLIDRPIRPLFPYDFRNDVCITCTVMSVDY 131

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP V +M+  SA L  S +PF GP+   +V Y +G+ V NP  ++ +   +D+ V+ T
Sbjct: 132 DCSPEVTAMIGVSACLSYSEIPFAGPIGCLEVGYCDGEIVFNPTQEQRKTSRMDVTVAAT 191

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           +  V+M+E  A+Q+ +D++ + I+  H E K  +  I+ +     K  +  D  DF+ +L
Sbjct: 192 EKKVVMIEAGADQIPDDIMYEGIVKAHEEIKKQVAFINGIVSQIGKPKMEYDHADFNQEL 251

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            +++     ++ + +    +K +R ++ + +  K    +  E+   +   +       Q 
Sbjct: 252 FDKIVDKYMDEAKAAMDTDDKNIREQRWNAMIDKWHEDYLEEYPEMD-KYLEEFTYKFQK 310

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K+V+  +L    R+DGR    +R +SA+VG+L + HGS LF RG TQ + V TL T    
Sbjct: 311 KIVKAWLLQ-GHRVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAAS 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D++   +   +M HYNF P + GE     + +RRE GHG LA RA+ PVLP   +FP
Sbjct: 370 QKLDTIWEEEEKRYMHHYNFPPYSVGEAKAPRSTNRREYGHGALAERALVPVLPSVDEFP 429

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDI 479
           Y +R+VSE+  S+GS+S  ++CGS+LALMDAGVPI  PVAGI+ GL++D D  F    DI
Sbjct: 430 YAIRVVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLIQDDDGSFQTFIDI 489

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS-KV 538
            G ED  G MDFKVAGT +GITA+QMD+K  G++  I+  AL+  K  R  IL+E+    
Sbjct: 490 QGVEDFHGEMDFKVAGTKAGITAIQMDLKNDGLTHEIIKQALEITKDARYAILDEIMLPC 549

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R ++ ++ P++  M I  D+IR VIG GG VI+ I  ++GA V+IDDDGT+ IAS 
Sbjct: 550 IAEPRPEVSKYAPKMITMKIDVDKIREVIGKGGSVIQKICAESGATVDIDDDGTIHIASP 609

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    +AA++MI +I  VPEV ++Y G+VV+++ FGAFV     +DG+VHIS+L+  RV 
Sbjct: 610 NAEACDAAKKMIDTIVFVPEVGQLYYGKVVRILTFGAFVELAPGKDGMVHISKLADRRVE 669

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           K  DVV  GD +WVK+ D D++G++ LS K   + 
Sbjct: 670 KVEDVVNIGDMIWVKVTDIDEKGRVNLSYKDALKE 704


>gi|76789587|ref|YP_328673.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           A/HAR-13]
 gi|237803274|ref|YP_002888468.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|123606542|sp|Q3KKJ7|PNP_CHLTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76168117|gb|AAX51125.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           A/HAR-13]
 gi|231274508|emb|CAX11304.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 695

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/695 (43%), Positives = 439/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GA+L    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAILVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    + G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+T++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             SD VKEGD + VKLL  +++G++KLS K   ++
Sbjct: 661 NISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695


>gi|37522718|ref|NP_926095.1| polynucleotide phosphorylase/polyadenylase [Gloeobacter violaceus
           PCC 7421]
 gi|81709200|sp|Q7NGM0|PNP_GLOVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|35213720|dbj|BAC91090.1| polyribonucleotide nucleotidyltransferase [Gloeobacter violaceus
           PCC 7421]
          Length = 713

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/701 (42%), Positives = 445/701 (63%), Gaps = 17/701 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +   +   GR + L TG +A+ + G+VL   GET VL T       ++G DFFPL V+Y+
Sbjct: 4   YRKSVTVHGREIGLSTGVLAQLAGGSVLVQSGETAVLVTATMASKPREGIDFFPLLVDYE 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E  IL +R+IDR +RPLF K + N+ Q++  V+  D+  
Sbjct: 64  ERLYAAGRIPGSFVRREGRPPEKAILAARLIDRPLRPLFPKGFINDVQIVATVLALDMNV 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +++++ AS A ML+G+PF+GPV   +V  +   +++NP   E ++G LDL V+GT++
Sbjct: 124 PPDILAILGASTATMLAGIPFDGPVAATRVGLMGDDFIINPTYKEIEEGELDLVVAGTKN 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFS 238
            ++MVE  AN L E+ ++DAI +G+   + ++ A  +  +    EP+       D    S
Sbjct: 184 GIMMVEAGANCLPEEDIIDAIDYGYEAVQAMLTAQEEFIRDLKIEPMAFVAPANDPVLVS 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGE 290
            +EE+ S+ + E LR   F   K  R  ++D ++ ++ + F+         E ++ N  +
Sbjct: 244 FVEEKASEAVAEVLR--SFELSKDERDAKLDAIEAELGTTFAGLGEEDPLREKAAANASK 301

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           + ++F+    K++R  +L +  R+DGR  + VR IS+ V ++ R HG  LF RG TQ + 
Sbjct: 302 LPALFKSTTKKLMRKQILVEGKRVDGRSLDEVRPISSAVRVIPRVHGCGLFTRGTTQVLS 361

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           VVTLGT  D Q +D L       +M HYNF   + GEV  +    RRE+GHG LA RAI 
Sbjct: 362 VVTLGTASDAQELDDLHPDDSKRYMHHYNFPGFSVGEVKPLRGVGRREVGHGALAERAIV 421

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P+LP+  QFPY +R+VSE+  S+GS+SM +VC S+LALMDAGVPI +PV+G+AMGL+K+G
Sbjct: 422 PILPEHEQFPYVIRVVSEVLSSNGSTSMGSVCASTLALMDAGVPIREPVSGVAMGLIKEG 481

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  IL+DI G ED LG MDFKVAGT  GITA+QMD+KI GI+  I+  A+QQ+K GRLH
Sbjct: 482 DEVRILTDIQGIEDFLGDMDFKVAGTRDGITALQMDIKIQGITLQILEAAIQQSKAGRLH 541

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M   + + R++L  + PR+  + IP D I  VIG GGK I+ IVE+TGAKV+I+DD
Sbjct: 542 ILEKMLIAIDKPRVELSPYAPRLLTLKIPVDMIGLVIGPGGKTIKRIVEETGAKVDIEDD 601

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHI 649
           GTV ++S   A+  AA+++I  +T   EV+K+Y G V +++   GAFV     ++GLVHI
Sbjct: 602 GTVVVSSIDGAKALAAKQIIEGMTRTVEVDKVYLGTVTRIIPNLGAFVEVMPGKEGLVHI 661

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           SQL+  RV K  D +  GD V VK+ + D +G+I L+ + +
Sbjct: 662 SQLAEHRVRKVEDELNVGDEVVVKVKEIDQKGRINLTRRGI 702


>gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 731

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/719 (44%), Positives = 460/719 (63%), Gaps = 28/719 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-LKDGQDFFPLTV 61
           +   EI+   G+ L +ETG++A+Q+DGA +   G+T+VLATVV  +      QD+FPL V
Sbjct: 2   IINKEIDLGLGKILSIETGKMAKQADGATVVRLGDTMVLATVVSSKKTPPPNQDYFPLQV 61

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+  A GK PGG+ +RE+RP+E E+L +R+IDR++RPLF   Y  ETQ+II V+  D
Sbjct: 62  EYREKYSAAGKFPGGFFKRETRPSEKEVLSARLIDRALRPLFPDGYLYETQIIITVISSD 121

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
             +   V+  +AASAA+M+S +PF   +   +V  ING++++NP ++E  +  LD+ + G
Sbjct: 122 QINDGDVLGGIAASAAIMVSDIPFRNAMSEVRVGRINGKFIINPDVNELAESDLDICIGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-PIVIDSKDFSK 239
           T+D + M+E E  ++SE  +LDAI FGH+  K +     ++A    K     +  +  ++
Sbjct: 182 TKDTICMLEGEMQEISEAEMLDAIKFGHDAIKRLCTLQDEIAAAVGKPDRPFVPVQVPAE 241

Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQ--------IDDLKKKMVSYFSSEHSSWNEGE 290
           L E +    +  L+   + P  K  R  Q        I  + +K  S  SSE  + +  +
Sbjct: 242 LTEAVRSTCETRLKELAYTPLRKEDRADQTAHIYRETIQAIVEKFKSSISSEDIAADPAK 301

Query: 291 --------IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                   I      ++ KV+R ++LD   R+DGR  E VR IS ++G++ R HGS+LF 
Sbjct: 302 ALCLNEHIIEEEIHSVEKKVMRHMILDDSKRLDGRTLEEVRPISIELGIIPRAHGSALFT 361

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V +TLGT++D Q VD+L+ +    FM+HYNF P + GE  R+G+  RREIGHG
Sbjct: 362 RGETQALVTITLGTKKDAQSVDNLTNSADKKFMLHYNFPPFSVGETGRIGSTGRREIGHG 421

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RAI  V P   +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GI
Sbjct: 422 NLAERAIKMVAPTEQEFPYTIRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGI 481

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G  + +LSDI G+EDHLG MDFKV GT  GITA QMD+KI G+  +++  AL+
Sbjct: 482 AMGLIKEGSAYAVLSDILGNEDHLGDMDFKVTGTRDGITACQMDIKIDGLDYHVLETALE 541

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA++GRLHIL++M + + ESR +L +F PR+  + +P + I  +IG GG+ IR I E+TG
Sbjct: 542 QARKGRLHILDKMDEAIPESREELAQFAPRLTTIKVPVESIGMIIGKGGETIRSITEETG 601

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCG 641
           A++NIDDDGTV IA +S+    AA   I+++   PEV  +Y G+V  + D  GAFV F  
Sbjct: 602 AQINIDDDGTVTIACTSVEGTNAALATIKTLLAKPEVGTVYLGKVRDIRDELGAFVEFLP 661

Query: 642 ARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQNT 694
             DGLVHIS++S+ ERV K SD +  GD + VKL+D   D R    +  LS+K V+   
Sbjct: 662 KTDGLVHISEISSTERVNKVSDHLNIGDKIKVKLVDVRKDPRTGKTRFALSIKAVENEP 720


>gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
           bacteriovorus HD100]
 gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio
           bacteriovorus HD100]
          Length = 697

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/697 (46%), Positives = 448/697 (64%), Gaps = 9/697 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             TV     G+ + +ETGR+A+Q+DGA L + G  +VL T    +   +  DFFPLTV Y
Sbjct: 2   KTTVTTSVGGKQITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASE-LDFFPLTVEY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGGY +RE++PT + +LI+R+IDR IRP+F + Y++ETQ++  V+  D  
Sbjct: 61  IEKFYATGKIPGGYFKREAKPTNDAVLIARLIDRPIRPVFPEGYRHETQIVATVLSADGA 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
               +++ + ASAAL  S +PF GP    Q+  ++GQ+V NP   + +   +D+ V+GT+
Sbjct: 121 FPLEILASLGASAALHCSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDMIVAGTR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKL 240
           + +LMVE E   +SE   L A+ FGH    P++ A  +L +      +         +  
Sbjct: 181 NGLLMVEGETKFISEADALAALKFGHQSLIPLLNAQDELREKAGSVAKRAFTAPSIDADF 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-----EGEIVSVF 295
           + +   +++  +  +  I EK  R    ++   +      ++ +        + E+ S+ 
Sbjct: 241 KAKAESLLRPKIAAALSIKEKQDRYAAANEAAAEAEKALLADIADKELLKQRKKELNSIV 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ED++ +  R+++LD+ VR+DGRD +TVR I+ +VG+L R HGS LF RG+TQ +  VTLG
Sbjct: 301 EDLKYQEARSMILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T +DEQ VDSL G Q+  FM+HYNF P + GEV RM   SRREIGHG LA RAI  VLP 
Sbjct: 361 TADDEQMVDSLLGLQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERAIKAVLPD 420

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+RIVSE+ ES+GSSSM TVC   +AL+DAGVP+   VAG+AMGL+K+GD   +
Sbjct: 421 FEKFPYTIRIVSEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKVAG+ +GITA+QMD+KI  +S  +M  AL QAK GR HILNEM
Sbjct: 481 LTDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEM 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            KV+   R Q+ EF PR+E + I PD+IR VIG GGKVIRGI E TG K+ I DDGT+ I
Sbjct: 541 EKVMKVPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIQDDGTINI 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           AS+     + A  MI  I    EV K YKG++VK+ +FGAFV       GL+HIS++S E
Sbjct: 601 ASADPEATKKAIAMINDIIAEAEVGKTYKGRIVKIAEFGAFVEILPNTQGLLHISEISNE 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           RV   SDV+KEG+ + VK+L+ D  G++KLS K + Q
Sbjct: 661 RVRAVSDVLKEGEIIDVKVLEVDRSGRVKLSRKALLQ 697


>gi|260589519|ref|ZP_05855432.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
           20583]
 gi|260540087|gb|EEX20656.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
           20583]
          Length = 691

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/693 (39%), Positives = 419/693 (60%), Gaps = 9/693 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA L  YG+T VL+T       ++G DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRILTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVGKIPGG+ +RE + +E+ IL SR+IDR +RPLF K Y+N+  +   VM  D E +P V
Sbjct: 61  AVGKIPGGFNKREGKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPEV 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           V+M+ +S A  +S +PF+GP    Q+  +NG+ V+NP L + +   L L V+ T++ V+M
Sbjct: 121 VAMLGSSIATCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISDLQLTVASTREKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQ 246
           +E  AN++ E  +++AI   H   + +I  I K+   C KE    +S     +L   + +
Sbjct: 181 IEAGANEIPEAKMIEAIFKAHEVNQEIIAFIDKIVAECGKEKHSYESCAVPEELFAAIKE 240

Query: 247 MIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++  E++  + F  EK VR + I  + +K+   F+   +      +       Q K VR 
Sbjct: 241 IVTPEEMEEAVFTDEKQVREENIRVITEKLEEAFAE--NEEWLAVLGEAVYQYQKKTVRK 298

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L    R DGR    +R ++A+  ++ R HGS++F RG TQ   + TL    + Q +D 
Sbjct: 299 MILKDHKRPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQICTITTLAPLSEAQRLDG 358

Query: 366 LSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           L        +M HYNF   + GE      P RREIGHG LA RA+ PV+P   +FPY +R
Sbjct: 359 LDEFEVSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEFPYAIR 418

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGD 482
            VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+++L+DI G 
Sbjct: 419 TVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGETDDDYLVLTDIQGL 478

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSE 541
           ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K  R +IL E M K +  
Sbjct: 479 EDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIIEEAIARTKEAREYILTEVMEKCIPA 538

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  + ++ P++  + I P++I +V+G  GK I  I+++TG K++IDD+G V I  +   
Sbjct: 539 PRKTVSKYAPKIVQIQIDPEKIGDVVGQRGKTINAIIDETGVKIDIDDNGGVSICGTDQH 598

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++ A E I++IT   +  +I+ G+V+ + +FGAF+ F   ++G+VHIS++S ER+ K  
Sbjct: 599 MMDKAVEYIKTITTDYQEGQIFTGKVISIKEFGAFLEFAPGKEGMVHISKISKERIEKVE 658

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           DV+  GD V V  L  D  G+I  SMK V +  
Sbjct: 659 DVLSIGDVVKVVCLGKDKMGRISFSMKDVPEEA 691


>gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 732

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/718 (44%), Positives = 456/718 (63%), Gaps = 27/718 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-LKDGQDFFPLTV 61
           + T EI+   G+ + +ETGR+A+Q+DGA +   G+T+V+ATVV  +      QDFFPL V
Sbjct: 2   IITKEIDLGQGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSPNQDFFPLQV 61

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+ YA GK PGG+ +RE+RP+E EIL +R+IDR++RPLF   Y  ETQVIINV+  D
Sbjct: 62  EYREKYYAAGKFPGGFFKREARPSEKEILSARLIDRALRPLFPTGYYYETQVIINVISSD 121

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++   V+  +AASAA+M+S +PFE  +   +V  +NGQ+++NP +DE +   +D+ + G
Sbjct: 122 QQNDADVLGGLAASAAIMVSDIPFENAMSEVRVGRVNGQFIINPTIDELEGSDIDISIGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSK 239
           T   + M+E E  ++SE  +L+AI FGH   K +      +    AK        +  S+
Sbjct: 182 TAGTICMLEGEMKEISEAEMLEAIRFGHEAIKKLCALQDSVQAAVAKAKRPFAPLQVPSE 241

Query: 240 LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLK----KKMVSYFSSEHSSWN------- 287
           L   +S   K  L+  +     K  R ++  ++     K  V +FS+  SS +       
Sbjct: 242 LGAFISDACKARLKELAYTALAKEERAERTKEIYGETLKSAVEHFSAAFSSEDLAADPSK 301

Query: 288 -----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                E  I      ++  V+R ++LD   R+DGR  + VR IS  +G++ R HGS+LF 
Sbjct: 302 ALCTNEHIIEEEIHSVEKDVMRRMILDDAKRLDGRTLDQVRPISIDLGVIPRAHGSALFT 361

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V VTLGT++D Q VD+L+ +    FM+HYNF P + GEV R+G   RREIGHG
Sbjct: 362 RGETQALVAVTLGTKKDAQSVDTLTNSADKRFMLHYNFPPFSVGEVGRLGTTGRREIGHG 421

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RAI  V P   +FPYT+RIVSEI ES+GSSSMA+VCG +LALMD GVP+ K V+GI
Sbjct: 422 NLAERAIRMVAPTEQEFPYTIRIVSEILESNGSSSMASVCGGTLALMDGGVPLKKAVSGI 481

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G ++ +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+
Sbjct: 482 AMGLIKEGSEYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALE 541

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+RGR HIL++M + +  SR  L  + PR+  + +P + I  +IG GG+ IR I E+TG
Sbjct: 542 QARRGRFHILDKMEEAIPASREDLAHYAPRLTAIQVPVESIGLIIGKGGETIRSITEETG 601

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCG 641
           A++NI+DDGTV IA SS    + A E+I+++   PEV  +Y G+V  + D  GAFV F  
Sbjct: 602 AEINIEDDGTVTIACSSNEGTKGAVEIIKALIAKPEVGTVYIGKVRDIRDELGAFVEFIP 661

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQNT 694
             DGLVHIS+++ ERVAK SD +K G+ V VKL+D   D R    +  LS+K      
Sbjct: 662 KTDGLVHISEIANERVAKVSDHLKVGERVKVKLVDIRKDPRTGKTRFALSIKAALDAP 719


>gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii
           str. Madrid E]
 gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia
           prowazekii]
          Length = 745

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/691 (47%), Positives = 477/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L++ TG+IARQ++ AV    G +++L T V    +KDG  FFPLT
Sbjct: 1   MFNEITKSVMWNGQVLEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  Y+ GKIPGG+ +RE + ++ EIL+SR+IDR IRPLF + + +ET V  +V+ +
Sbjct: 61  INYREMAYSAGKIPGGFFKREGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D  +   +++++ ASAAL +S  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPATPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+D+V+MVE EA+ LSED +L+A+ FG    + VI+ I +LAK   K    +     S 
Sbjct: 181 GTEDSVMMVESEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKEAKKPKFEMQDLYPSS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +  + +K++++F    E+  +N  +I S  + 
Sbjct: 241 LKKEIEKLFTKEVEQAFEIKSKQERSTDLALIYEKVLTHFVRDIENKKYNNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I A ++R  +L+K +R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 ISADILRNKILEKNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+ + F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT SGITA+QMD+KI GI   I+ +AL+QA+ GRLHIL +M+K
Sbjct: 481 DIIGDEDYFGDMDFKVAGTSSGITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+I+++IG GGK+I+ I E + AK++I DDGTV I +
Sbjct: 541 VISKPNSELSKNAPSSTTVKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +I+ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S  R+
Sbjct: 601 SDRDKIKIALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K S V+K+GD V VKL+ FD++GK KL++K
Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691


>gi|167765957|ref|ZP_02438010.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
 gi|317498464|ref|ZP_07956758.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167712360|gb|EDS22939.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
 gi|291558981|emb|CBL37781.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SSC/2]
 gi|316894157|gb|EFV16345.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 696

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/689 (42%), Positives = 426/689 (61%), Gaps = 9/689 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
                +E AGR L +E GR+A Q++GA    YG+TVVL+T       +DG DFFPL+V Y
Sbjct: 2   TKQFSMELAGRTLMVEVGRVAAQANGAAFMHYGDTVVLSTATASEKPRDGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGGYL+RE +P+EN IL  R+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 62  EEKLYAVGKIPGGYLKREGKPSENAILTDRVIDRPMRPLFPKDYRNDVALNNLVMSVDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP + +M+ ++ A  +S +PF+GP     V  I+G++V+NP   + +   L L V+ T+
Sbjct: 122 CSPELTAMLGSAIATAISDIPFDGPTASTMVGLIDGEFVINPTSAQKEVSDLALTVASTR 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKL 240
           + V+M+E  AN++ EDV+L+AI   H   + +I+ I  +   C KE    +    D    
Sbjct: 182 EKVIMIEAGANEVPEDVMLEAIFKAHEVNQEIIKFIDTIVAECGKEKHDYEHHIVDPEMY 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           ++ ++ +  E +  + F  +K  R   I  +++K+   ++   +     +I       Q 
Sbjct: 242 DDMVAFITPEAMEEAVFTDDKQTREANIRAIEEKLEERYAE--NEEWLAQIGEAVYAFQK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGRD + +R + A+V  L R HGS+LF RG TQ + V TLG+  + 
Sbjct: 300 KTVRKMILKDHKRPDGRDIKQIRPLHAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEA 359

Query: 361 QYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D +        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QRLDGIDVTETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSEI ES+GS+S  ++C SSL+LM AGVP+  PVAGI++GLV  +  DD+IIL+
Sbjct: 420 PYAIRTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGEGDDDYIILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536
           DI G ED  G MDFKVAGTD GITA+QMD+KI G++E I+  A+ + K  R HIL + M+
Sbjct: 480 DIQGLEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTEQIIREAIARTKEARTHILHDVMN 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+  +R  +GEF P++    I P++I  VIG  GK I GI+++TG K++ID+ G + I 
Sbjct: 540 PVIPAARDHVGEFAPKISQYTIDPEKISEVIGKQGKTINGIIDETGVKIDIDESGRIDIL 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S   A I+ A  +I+SI +   V  IY+G+VV++M+FGAFV     +DG++HIS+LS ER
Sbjct: 600 SEDQAMIDKAISIIKSIVEPLNVGDIYEGEVVRIMNFGAFVQLSPNKDGMIHISKLSNER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V K  DVV  GD V VK+L+ D  G+I L
Sbjct: 660 VEKVEDVVNIGDKVAVKVLEIDKMGRINL 688


>gi|166368080|ref|YP_001660353.1| polynucleotide phosphorylase/polyadenylase [Microcystis aeruginosa
           NIES-843]
 gi|189037309|sp|B0JYC3|PNP_MICAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166090453|dbj|BAG05161.1| polyribonucleotide nucleotidyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 717

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/700 (41%), Positives = 436/700 (62%), Gaps = 15/700 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L+ G +A Q+ G+VL   GET VL T    +  ++G DF PLTV
Sbjct: 1   MEEFDKSISFDGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAK-AREGVDFLPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER YA G+IPGG+LRRE RP E  IL  R+IDR +RPLF    +++ QV+   +  D
Sbjct: 60  DYEERLYAAGRIPGGFLRREGRPPEKAILTGRLIDRPLRPLFPNWMRDDIQVVATTLSMD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            E  P V+++  AS A++L+G+PF+GP+   +V  +  ++++NP   E   G LDL V+G
Sbjct: 120 EEVPPDVLAVTGASVAVLLAGIPFQGPMAAVRVGLLGDEFIINPTYKEIHNGELDLVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           + + V+M+E  ANQL E  +++AI FG+   + +I A  +L        +  ++   ++ 
Sbjct: 180 SPEGVVMIEAGANQLPERDIIEAIDFGYEAVRDLITAQRELIDQLGIPLVTREAPAVNET 239

Query: 240 LEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEG 289
           ++  + +  KE+++   S F   K  R ++++ ++ ++    ++                
Sbjct: 240 VQNFLREQAKEEIKQILSQFTLSKTERDEKLEAIENRIKETITALPDEDTLKAPTLEEPK 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQA 348
            I ++F+D+  K++R  +++  VR+DGR  + VR IS +VG+L R  HGS LF RG TQ 
Sbjct: 300 LIGNLFKDLTKKLMRAQIIEDGVRVDGRQLDEVRPISCRVGVLPRRVHGSGLFNRGLTQV 359

Query: 349 IVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           + + TLGT  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA R
Sbjct: 360 LSIATLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAER 419

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+ KPV+G AMGL+
Sbjct: 420 AIVPVLPPQEEFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLI 479

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+G++  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A++QA   
Sbjct: 480 KEGEEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIPGLSMEVVAKAIEQALPA 539

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R HIL +M   L + R +L    PR+  + I PD I  VIG GGK ++GI EQTG K++I
Sbjct: 540 RKHILEKMLATLEKPRTELSPHAPRLLTIKIDPDLIGLVIGPGGKTVKGITEQTGTKIDI 599

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DDDGTV I+S+   + E A+ +I ++T      ++Y G+V +++  GAFV     ++G++
Sbjct: 600 DDDGTVTISSTDGEQAEKAKRLIYNMTRKLNEGEVYLGRVTRIIQIGAFVEVLPGKEGMI 659

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           HISQL+  RV K  D V  GD V VK+ + D +G++ L+ 
Sbjct: 660 HISQLAEGRVGKVEDEVAVGDEVLVKVREIDSKGRLNLTR 699


>gi|284053181|ref|ZP_06383391.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis
           str. Paraca]
 gi|291569922|dbj|BAI92194.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis
           NIES-39]
          Length = 720

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/697 (42%), Positives = 428/697 (61%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ GA+L   G+T VL T       + G DF PL V+Y+ER
Sbjct: 6   KSISFDGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRA-EGRPGIDFLPLLVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP +   L SR+IDR +RPL     +++ Q++   +  D +  P
Sbjct: 65  LYAGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++L+ +PF GP+   +V  +   +++NP   E   G LDL V+G+   V
Sbjct: 125 DVLAVTGASVAVLLARIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGDLDLVVAGSPQGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDFSKL 240
           +MVE  AN+L E  V++AI FG+     +I+A +++ +        +EP+  D      +
Sbjct: 185 VMVEAGANELPEHDVIEAIDFGYEAVMDLIKAQTEIMQELNIDNPVEEPLPEDRTLIEFI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK----MVSYFSSEHSS-----WNEGEI 291
           +E +++ +K+ L    F   K  R   +D +K++     ++    +         N   +
Sbjct: 245 QERVTEPVKKVLGQ--FELNKDERDAALDVIKEEQIVSAIASMPEDDPISLFNIENPKAV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIV 350
             +F+DI  K++R  +L   VR+DGR+ + VR +S +VGLL  R HGS LF RG TQ + 
Sbjct: 303 GMIFKDITKKLMRQQILTDGVRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLS 362

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + TLGT  D Q +D L       +M HYNF P + GE   M +P RREIGHG LA RA+ 
Sbjct: 363 IATLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETRPMRSPGRREIGHGALAERALL 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   QFPY +RIVSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+G
Sbjct: 423 PVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++  A+ +AK  RLH
Sbjct: 483 SEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVADAIAKAKPARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M +VL   R  L  F PR+  + I PD I  VIG GGK I+GI E+TG K++IDDD
Sbjct: 543 ILEKMLEVLPSPRPDLSPFAPRLLTLKIDPDLIGLVIGPGGKTIKGITEETGVKIDIDDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV IAS+       A ++++ +T       +Y G+V +++  GAFV     ++G++HIS
Sbjct: 603 GTVTIASTDSENAARAYQIVQGMTRKLNAGDVYVGKVTRIIPIGAFVEVLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V VK+ + D +G+I L+ 
Sbjct: 663 QLAEYRVPKVEDEVAVGDEVIVKVREIDPKGRINLTR 699


>gi|116330633|ref|YP_800351.1| polynucleotide phosphorylase/polyadenylase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281612|sp|Q04U27|PNP_LEPBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116124322|gb|ABJ75593.1| Polyribonucleotide nucleotidyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 696

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/695 (43%), Positives = 434/695 (62%), Gaps = 6/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            HT+  ++    + LETG  A+Q+ GAV+   G  V+LATV      K+GQDFFPLT  Y
Sbjct: 2   THTISGQYGRDTIVLETGNWAKQAHGAVVYKSGNLVLLATVCAADDAKEGQDFFPLTCEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y  E Q+ + V+  D +
Sbjct: 62  TEKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            S    ++ AAS AL +S +PF GP+ GA++  ING+ +LNP   E     LDL V+GT+
Sbjct: 122 VSVAGHALNAASVALTISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLVVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKL 240
             ++M+E EA +LS + +L A+ F        +    + AK     K  + + ++D  +L
Sbjct: 182 THIVMIEGEAKELSNEEMLSALRFAQKHIAEFVTLQEEYAKQIGVVKREVKLKARDV-EL 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQ 299
             ++ +     L  +   P+K VR K+I ++ K +V +F       ++  +I +   +++
Sbjct: 241 LAKVKEYAFAKLTAANQTPDKTVRNKEISNVNKDVVEFFKQTVEDADKIKDIKTYLHELE 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L++ VR DGR  + +R IS ++  L   HGSS+F RG TQ++ VVTLGT  D
Sbjct: 301 YEIVREQVLNQGVRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSD 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  ++L G +   FM+HYNF   + GEV R   P RREIGHG LA RA+  VLP++ +F
Sbjct: 361 NQRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKSEEF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-GDDFIILSD 478
           PY +R+VSEI ES+GSSSMA+VC  SLALM AGVPI   V+GIAMGL  D    + +LSD
Sbjct: 421 PYVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIKGSVSGIAMGLFSDSSGKYAVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+G EDH G MD K+AGT  GITA QMD+K+ G+S +++    +QA+RGR HIL+ M K 
Sbjct: 481 IAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKH 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S++   L    PR+ +  IP D+I  +IG GGK +RGI E TGA++ I+DDG V I+ S
Sbjct: 541 ISKASDSLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGRVTISGS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    E A +M+       EV KIY+G+V ++ DFGAFV     ++GL HIS++  +RV 
Sbjct: 601 NQESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVN 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
              D+VKEGD + VK+L+ D  GKI LS K   + 
Sbjct: 661 SVKDIVKEGDIIRVKVLNVDKTGKIDLSRKDALEE 695


>gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
 gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
          Length = 712

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/696 (40%), Positives = 434/696 (62%), Gaps = 4/696 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   +  E +  G+  ++  G+ A Q++G      G+T +L T V     ++G DFFPL 
Sbjct: 1   MVKTYKYESKL-GKDFEITIGKFAEQTNGECYIRCGDTSLLVTAVASEKPREGIDFFPLI 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            ++QE+ YAVGKIPGG+L+RE + ++   LISR +DR +RPLF + Y N+ Q+I  V+  
Sbjct: 60  CDFQEKLYAVGKIPGGFLKREGKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSM 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P  ++ + AS AL +S +PF GPV    V  ++G+ ++NP  +E ++ +L+L V+
Sbjct: 120 DEDNLPDPLTTIGASIALGISDIPFYGPVGACMVGKVDGKLIINPSKEEREKSTLELTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G + A+ MVE  A +LSE+ +L+A++    E   + + I  +     KE I +   + ++
Sbjct: 180 GKKGAINMVEAGACELSEEEMLEAMLLALEEIGNISDFIQTIIDDIGKEKIEVAQIEETE 239

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+ ++S+  +ED++ S    +K  R   I  ++++    +   +   +E EI    ++I 
Sbjct: 240 LDRKISEDFEEDIKNSIRTTDKTEREANIFRIEEEAKEKYLEAYPE-SEDEIHRRIDNIM 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++   K+R DGRD   +R +SA+ GLL R HGS LF RG TQ + VVTLG+  D
Sbjct: 299 KKEVRRMISIDKIRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPAD 358

Query: 360 EQYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L+  + +  ++  YNF P   G++  +  P RREIGHGRLA RA+ PVLP    
Sbjct: 359 VQIIDGLNREEIQKRYIHQYNFPPFCVGDIRPLRGPGRREIGHGRLAERALIPVLPDEKD 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+  S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+     IL+D
Sbjct: 419 FPYTIRVVSEVLSSNGSSSQASICGSTLSLMDAGVPIRKPVAGIAMGLIKEDSSISILTD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDHLG MDFKVAGT  GITA+QMDMKI GI+  ++  +L  A   R+ IL+ +   
Sbjct: 479 IQGLEDHLGDMDFKVAGTRDGITALQMDMKIDGITREVLEESLNDAHSARMRILDVIEAA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R  + E+ PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS+
Sbjct: 539 IDKPRDDISEYAPRLFTIDIDPEKVRDVIGSGGKTINKIIDATGVKIETEDDGHITVASN 598

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                + A EMI++I   P+   +Y G+VV++M+FGAFV     ++GL+HISQ+   RV 
Sbjct: 599 DGESGKKAIEMIKAIVTDPKAGDVYTGKVVRIMNFGAFVEIAIGKEGLLHISQIDHHRVE 658

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K  D +K GD V VK+ + D +G+I LS K + +  
Sbjct: 659 KVEDELKVGDEVKVKVTEIDRQGRINLSRKALLEKP 694


>gi|253682340|ref|ZP_04863137.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
           str. 1873]
 gi|253562052|gb|EES91504.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
           str. 1873]
          Length = 706

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/696 (41%), Positives = 439/696 (63%), Gaps = 5/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V    + K+G DFFPL++ YQ
Sbjct: 3   HVFETTVAGRKLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPAPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  I+G++++NP   + ++  LDL V  T++
Sbjct: 123 LPNILAMNGASLALCLSSIPFTKPVGTVSVGLIDGEFIVNPTSKQREESILDLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
            V+M+E    ++ EDV+ DAI+FG  ECK + +   K+ +   K+   +   +  + +E+
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQEKVMEQYGKQKAELILHEINADIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+     + ++ + +I +K +R K +D++K+K+   FS ++   N  +I  V   +Q +V
Sbjct: 243 EVKDFAFDMIKEAMYITDKDLRNKAVDEVKEKVNEEFSEKYPD-NLADIGEVIYKMQKQV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L++K R DGR  + +R +SA+  LL RTHGS LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRNMILNEKRRPDGRSFDEIRPLSAETSLLPRTHGSGLFSRGLTQVMSVATLGSVSEGQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY 
Sbjct: 362 LDGIDEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV   D     IL+DI 
Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSKEEILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A+  RL IL  ++  + 
Sbjct: 482 GLEDFFGDMDFKVAGTEKGITAIQVDTKIEGLSNDCIKKAIGDARTARLTILKVINDCID 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R ++ ++ P+V  M I P +I++VIG GGK I  I+++TG K++I +DG V + +   
Sbjct: 542 KPREEVSKYAPKVFTMTINPSKIKDVIGSGGKTINKIIDETGVKIDIKEDGAVFVTAEDY 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A EMI   +   +  +IY G+V K  +FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 ESGRKALEMIEGYSKEVKEGEIYLGKVTKTSNFGAFVSILPGKEGLVHISKLDVKRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            DVV  GD + VK+ + D  G+I LS K   +++ +
Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRINLSRKDAIKDSEQ 697


>gi|325265390|ref|ZP_08132114.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
 gi|324029391|gb|EGB90682.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
          Length = 695

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/699 (39%), Positives = 418/699 (59%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E+E AGR L+++ GR+A+Q++GA L  YG+T VL T       ++G DFFPL+
Sbjct: 1   MF--KKFEMELAGRTLRVDVGRVAKQANGAALMHYGDTTVLCTATASEKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y ER Y+VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYNERLYSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   +     + L V+
Sbjct: 119 DQDCSPELTAMLGAAIATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKDISDMALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T++ V+M+E  AN++ E  ++DAI   H   + VI  I  +   C K     +S     
Sbjct: 179 STKEKVIMIEAGANEVPEAQMIDAIFAAHELNQKVIAFIETIVAECGKPKHSYESCAVPE 238

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L E + +++   ++  + F  +K  R + I  +  K+   F+ +        +      
Sbjct: 239 ELFEAIKEIVTPAEMEEAVFTDDKQTREENIRLITAKLEEAFAEKEE--WLAVLGEAVYQ 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L  + R DGR  + +R +SA+  L+ R HGS++F RG TQ   V TL   
Sbjct: 297 YQKKTVRKMILKDQKRPDGRAIDQIRALSAETDLIPRVHGSAMFTRGQTQICTVTTLAPL 356

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            D Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 357 SDAQRIDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
           ++FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD++
Sbjct: 417 SEFPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDTDDDYL 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R  IL+E
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDE 536

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M+K ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V
Sbjct: 537 VMNKTIAEPRPEVGPYAPKIVQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +  +  A ++ A +MI  IT   E  ++++G+V+ + +FGAF+ F   ++G+VHIS++S
Sbjct: 597 SVCGTEQAGMDEAMKMIAVITTDFEAGQVFEGKVISIKEFGAFLEFAPGKEGMVHISKIS 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ER+ K  DV+K GD V V  L  D  G+   SM+ V +
Sbjct: 657 KERINKVEDVLKLGDIVKVVCLGKDKMGRFSFSMRDVAE 695


>gi|166154186|ref|YP_001654304.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           434/Bu]
 gi|166155061|ref|YP_001653316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335431|ref|ZP_07223675.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           L2tet1]
 gi|226702634|sp|B0B971|PNP_CHLT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702636|sp|B0BAV0|PNP_CHLTB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|165930174|emb|CAP03658.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           434/Bu]
 gi|165931049|emb|CAP06612.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 695

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/695 (43%), Positives = 439/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +   F P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAVLVKMNETWVFSSACAA-SLSEAVGFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    + G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +  LL RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPLLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+T++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             SD VKEGD + VKLL  +++G++KLS K   ++
Sbjct: 661 NISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695


>gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii
           Rp22]
          Length = 745

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/691 (46%), Positives = 476/691 (68%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W G+ L++ TG+IARQ++ AV    G +++L T V    +KDG  FFPLT
Sbjct: 1   MFNEITKSVMWNGQVLEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  Y+ GKIPGG+ +RE + ++ EIL+SR+IDR IRPLF + + +ET V  +V+ +
Sbjct: 61  INYREMAYSAGKIPGGFFKREGKASDREILVSRLIDRPIRPLFHQAFMHETHVTCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D  +   +++++ ASAAL +S  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPATPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+D+V+MVE EA+ LSED +L+A+ FG    + VI+ I +LAK   K    +     S 
Sbjct: 181 GTEDSVMMVESEAHLLSEDKMLEAVKFGFESFQTVIKLIKELAKEAKKPKFEMQDLYPSS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +  + +K++++F    E+  +N  +I S  + 
Sbjct: 241 LKKEIEKLFTKEVEQAFEIKSKQERSTDLALIYEKVLTHFVRDIENKKYNNYQIESALKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I A ++R  +L+K +R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 ISADILRNKILEKNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGLVK+ + F +LS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI GI   I+ +AL+QA+ GRLHIL +M+K
Sbjct: 481 DIIGDEDYFGDMDFKVAGTSQGITALQMDIKISGIDFKIIQIALEQARLGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S+   +L +  P    + I  D+I+++IG GGK+I+ I E + AK++I DDGTV I +
Sbjct: 541 VISKPNSELSKNAPSSTTVKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSIYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S   +I+ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S  R+
Sbjct: 601 SDRDKIKIALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISDARI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K S V+K+GD V VKL+ FD++GK KL++K
Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691


>gi|94984509|ref|YP_603873.1| polynucleotide phosphorylase/polyadenylase [Deinococcus
           geothermalis DSM 11300]
 gi|122986710|sp|Q1J1D0|PNP_DEIGD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94554790|gb|ABF44704.1| Polyribonucleotide nucleotidyltransferase [Deinococcus geothermalis
           DSM 11300]
          Length = 721

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/695 (44%), Positives = 442/695 (63%), Gaps = 10/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T      GR L +ETG++A+ + G+V   YG+T++L T    R  +   DF PLTV ++
Sbjct: 4   KTYTTMLGGRELSIETGKLAKLASGSVTLRYGDTLLLVTA-QAREERSTLDFLPLTVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVG+IPG + RRE RP E+ IL +R+ DR IRPLF K Y+ ETQVII V+  D ++
Sbjct: 63  ERHYAVGRIPGSFHRREGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           +P V+  + ASAAL LS +P+ GP    +V  I+G+YV+NP  D+  + SLDL V+GT+D
Sbjct: 123 APDVLGAIGASAALSLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDLVVAGTRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLE 241
           AV MVE  A  +SE+ ++ AI F H E + V++ I  +     +E    ++DS   + L 
Sbjct: 183 AVNMVEAGAQGVSEETLVGAIEFAHRELQGVLDLIETMRAEVGREKFNFLVDSDLSTDLV 242

Query: 242 EEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE----IVSVFE 296
            E+S+  +   LR +    +K  R   +  L+ ++++    +  +    E    + + F 
Sbjct: 243 PELSEAARAAGLRDALLTTKKQERSANLKALRDRLIAERVPDPEAAGAAEQIEALKAAFA 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ + +R ++L + +R DGR+S+TVR I  +   L R HGS++F RG+TQ + V TLGT
Sbjct: 303 KVEKQELRRLILQEDLRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DE  VD+L+G   + F++HYNF P +TGEV R+G  SRRE+GHG LA+RAI  VLP  
Sbjct: 363 ERDELLVDNLTGETNDRFLLHYNFPPYSTGEVKRVGGQSRREVGHGNLAKRAIRAVLPAF 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V E+ ES+GSSSMATVC  +L+LMDAGVPI  PVAG+AMGLV +G+ + IL
Sbjct: 423 DDFPYVIRVVGEVLESNGSSSMATVCAGTLSLMDAGVPIQAPVAGVAMGLVMEGEQYRIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+K+ G++  IM  AL QA+  RLHIL +M+
Sbjct: 483 TDILGLEDALGDMDFKVCGTAEGVTALQMDIKVSGVTPAIMREALAQAREARLHILGKMA 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VL   R +L    PR+  + I P+ I  VIG GGK +R + E  GA+V I++DG ++I 
Sbjct: 543 EVLPAPRPELSPTAPRILTLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGNIRIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+  A  EA R+ I  +T   +V + Y+G VVK   FGAFV+    +DG++HISQ+S  R
Sbjct: 602 SADGAAAEAVRQKIEGLTREAKVGEEYEGTVVKTAPFGAFVNLFPGQDGMLHISQMSENR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V    DV+  GD + VK+ + DDRGKI L    ++
Sbjct: 662 VNAVEDVLNVGDRLRVKIANIDDRGKIDLIRPELE 696


>gi|269792330|ref|YP_003317234.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099965|gb|ACZ18952.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 752

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/690 (43%), Positives = 435/690 (63%), Gaps = 5/690 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V++E  GR L  ETGR+A+Q++GAV A+YGET VL T V     ++G DFFPL V+Y+
Sbjct: 3   KVVQLELGGRVLSFETGRMAKQANGAVYASYGETAVLVTSVMSEKPREGLDFFPLLVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+ GKIPGG+++RE RP+E  IL  RM+DRSIR LF +  +N+  V+  V+  D  +
Sbjct: 63  ERFYSAGKIPGGFIKREGRPSETAILSGRMVDRSIRSLFPEHMRNDVHVVATVLSVDQHN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
            P+V+++ AASAAL +S +P++GP+   ++  I+GQ ++NP   +  + +LDL V+G   
Sbjct: 123 PPNVLAINAASAALAISDIPWDGPIGAVRIGCIDGQLLVNPTEPQMAESTLDLLVAGHDG 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEE 242
            + MVE  AN++SED+++DA+   H E + ++  I  L      + + I       +++ 
Sbjct: 183 GITMVEAGANEVSEDLLVDAMELAHQEIRRIVAFIRDLQAQVGLKKVEIAPPARIDEIDA 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            +   +KE++  +  I  K  R   +  + K+ V  F   H     G + SV E+   K 
Sbjct: 243 WIEAELKEEIYKAVQIHHKVERKDALSAITKRAVERFEESHPGC-AGYVASVVEEWVKKG 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-REDEQ 361
           +R ++LD+  R DGR  + +R I+ +VG+L + HGS+LF RG+TQA+ V TLG   ED+Q
Sbjct: 302 LRRLLLDEGRRADGRAMDQLRPITCEVGVLPKVHGSALFTRGETQALAVTTLGMMGEDDQ 361

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        F++HYNF P + GEV  M  P RREIGHG LA RA+ P+LP   QFP
Sbjct: 362 ILDGLKIDEPAKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPMLPSEDQFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VS+I ES+GSSSMA+VCG SL++MDAGVPI K VAG+AMGLV DG    IL+DI 
Sbjct: 422 YVVRVVSDILESNGSSSMASVCGGSLSMMDAGVPIKKAVAGVAMGLVTDGSRVCILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT  G+TA+QMD K GGI+  I+  AL QA+ GR+ IL+ M   + 
Sbjct: 482 GLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILKRALDQARDGRMRILDIMDGAIR 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R Q+    PR+  + I PD+IR+VIG GGK IR I+ QTGAKV++ DDG V +A+ + 
Sbjct: 542 SPRDQISPNAPRIMTITIDPDKIRDVIGPGGKTIRSIIAQTGAKVDVQDDGRVCVAAQTE 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A ++I  +T   +  +I+ G++ +++ FG FV     ++GL+H+S++S+  + K 
Sbjct: 602 EAASQAIKIISDLTREVQAGEIFVGRITRMLGFGYFVEVLPGKEGLLHVSEISSHHIPKI 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            D    GD V V + + DD  +I LS + +
Sbjct: 662 EDAFSIGDEVLVVVREIDDMNRINLSRRRL 691


>gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
 gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
          Length = 708

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/701 (41%), Positives = 422/701 (60%), Gaps = 16/701 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRS-GGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRESRP E   LI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+++  AS A +L+ +PF GP+   +V  +   +VLNP   E ++  LDL V+GT  
Sbjct: 123 PPDVLAVTGASMATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDLDLVVAGTPQ 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFS 238
            V+MVE  ANQL E  V++ I FG+     +I+A   L K    E +       D    +
Sbjct: 183 GVIMVEAGANQLPEQDVIEGIDFGYEAVSELIKAQQALLKDLGIEQVFPEARSDDPTLPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS---SWNEGEIV 292
            LE+E S  I E L+   F   K  R  ++D +K ++   ++  + +     + +     
Sbjct: 243 FLEKECSDAIGEVLKQ--FSLTKAERDAKLDAIKAEVGEKIAALAEDDPIRTAASGKAFG 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
           + ++ +  K++R  ++ +  R+DGR+ + VR I A  G+L  R HGS+LF RG TQ +  
Sbjct: 301 NSYKGLTKKLMRAQIVGEGKRVDGRNLDEVRPIQAAAGVLPKRVHGSALFQRGLTQVLSC 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D Q +D L+ +    ++ HYNF P +TGE   M +P RREIGHG LA RA+ P
Sbjct: 361 ATLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSTGETKPMRSPGRREIGHGALAERALVP 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP    FPY LR+VSE   S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+G+
Sbjct: 421 VLPAKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGE 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G++   +  A+ QA+  RLHI
Sbjct: 481 EVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLAVGTVAEAVNQARPARLHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G
Sbjct: 541 LEKMLEAIDKPRDTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V IAS   A  E A+ +I  +T      +++ G V +V+  GAFV     ++G++HISQ
Sbjct: 601 IVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFTGGVTRVIPIGAFVEILPGKEGMIHISQ 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           LS  RV K  DVV  GD V V++ + D+RG+I L+++ V Q
Sbjct: 661 LSEARVEKVEDVVNVGDQVTVRVREIDNRGRINLTLRGVPQ 701


>gi|159028376|emb|CAO87274.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 717

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/697 (42%), Positives = 434/697 (62%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   GET VL T    +  ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAK-AREGVDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E  IL  R+IDR +RPLF    +++ QV+   +  D E  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPEKAILTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++L+G+PF+GP+   +V  +  ++++NP   E   G LDL V+G+ + V
Sbjct: 125 DVLAVTGASVAVLLAGIPFQGPMAAVRVGLLGDEFIINPTYKEIHNGELDLVVAGSPEGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKL 240
           +M+E  ANQL E  +++AI FG+   + +I A  +L          +E  V++    + L
Sbjct: 185 VMIEAGANQLPERDIIEAIDFGYEAVRDLITAQRELIDQLGIPLVTREAPVVNETVQNFL 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIV 292
           +E+  + IK+ L    F   K  R ++++ ++ ++    ++                 I 
Sbjct: 245 KEQAKEEIKQILCQ--FTLSKTERDEKLEAIENRIKETITALPDEDPLKAPTLEEPKLIG 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVV 351
           ++F+D+  K++R  +++  VR+DGR  + VR IS  VG+L R  HGS LF RG TQ + +
Sbjct: 303 NLFKDLTKKLMRAQIIEDGVRVDGRKLDEVRPISCLVGVLPRRVHGSGLFNRGLTQVLSI 362

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            TLGT  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA RAI 
Sbjct: 363 ATLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERAIV 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+ KPV+G AMGL+K+G
Sbjct: 423 PVLPPQEEFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           ++  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G++  ++  A++QA   R H
Sbjct: 483 EEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIPGLTMEVVAKAIEQALPARKH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M   L + R +L    PR+  + I PD I  VIG GGK ++GI EQTG K++IDDD
Sbjct: 543 ILEKMLATLEKPRTELSPHAPRLLTIKIDPDLIGLVIGPGGKTVKGITEQTGTKIDIDDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV I+S+   + E A+ +I ++T      ++Y G+V +++  GAFV     ++G++HIS
Sbjct: 603 GTVTISSTDGEQAEKAKRLIYNMTRKLNEGEVYLGRVTRIIQIGAFVEVLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V VK+ + D +G++ L+ 
Sbjct: 663 QLAEGRVGKVEDEVAVGDEVLVKVREIDSKGRLNLTR 699


>gi|15807057|ref|NP_295786.1| polynucleotide phosphorylase/polyadenylase [Deinococcus radiodurans
           R1]
 gi|6459851|gb|AAF11608.1|AE002042_3 polynucleotide phosphorylase [Deinococcus radiodurans R1]
          Length = 810

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/695 (43%), Positives = 437/695 (62%), Gaps = 10/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T      GR L +ETG++A+   G+V   YG+T++L T       +   DF PLTV ++
Sbjct: 35  KTFTTMLGGRELSIETGKLAKLVSGSVTVRYGDTLLLVTAQAS-DTQSKLDFLPLTVEFE 93

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D ++
Sbjct: 94  ERHYAVGKIPGSFQRREGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQN 153

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           +P V+  + A+AAL +S +P+ GP    +V  I+GQYV+NP  ++  +  +DL V+GT++
Sbjct: 154 APDVLGPIGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRMDLVVAGTRE 213

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKL 240
           AV+MVE  A  +SED ++ AI F H E + VI  I ++      E     +++      +
Sbjct: 214 AVMMVECGAQTVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHEKFNFLAEEGPANDYV 273

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI----VSVFE 296
            E   +     LR +     K  R  ++  L+  ++  +  + ++    E+       F 
Sbjct: 274 PELTEKAKAAGLRDALLTHGKKDRSARLKALRNGLIEGYVPDPTAEGSAELTQALKDAFG 333

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ + +R ++L++ +R DGRDS+TVR I  +   L   HGS++F RG+TQ + V TLGT
Sbjct: 334 KVEKRELRRLILEENLRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGT 393

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DE  +D L+    + F++HYNF P +TGEV RMG  SRREIGHG LA+RAI  VLP  
Sbjct: 394 ERDEILIDDLTAESGDKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNLAKRAIRAVLPSF 453

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V ++ ES+GSSSM TVC  +L+LMDAGVP+  PVAG+AMGLV +GD++ +L
Sbjct: 454 EEFPYVIRVVGDVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGDNYRVL 513

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+K+GGI+  IM  AL QAK GRLHIL +M+
Sbjct: 514 TDILGLEDALGDMDFKVCGTAEGVTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMA 573

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VL+  R +L    P +  + I P+ I  VIG GGK +R + E  GA+V I++DGTV+I 
Sbjct: 574 EVLAAPRAELSPTAPHILSLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTVRIF 632

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S    EA +  I ++T   +V + ++G VVK+  FGAFV+    +DG++HISQLS +R
Sbjct: 633 SASGESAEAVKARIEAVTKEAKVGEEFEGTVVKIAPFGAFVNLFPGQDGMLHISQLSEQR 692

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V    DV+  GD + VK+ + DDRGKI L    ++
Sbjct: 693 VENVEDVLTVGDKLKVKIANIDDRGKIDLIRPELE 727


>gi|254519178|ref|ZP_05131234.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
           7_2_43FAA]
 gi|226912927|gb|EEH98128.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
           7_2_43FAA]
          Length = 704

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/701 (41%), Positives = 443/701 (63%), Gaps = 7/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V  ++   AGR LKLE G+I   S+ A   +YG+TV+L  V      ++G DFFPL+
Sbjct: 1   MNNV--MKTTIAGRELKLEFGKIGMLSNLAAFISYGDTVILTNVNASEKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+ER Y+VGKIPGG+++RE RP+EN IL  R +DR +RPLF K Y+N+ QV+  V+  
Sbjct: 59  VEYEERLYSVGKIPGGFIKREGRPSENAILFGRAVDRPLRPLFPKGYRNDVQVVCTVVSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + ++ P ++++ AAS +L LS +PF  PV   QV  ING ++LNP   E ++  L L V 
Sbjct: 119 EKDNLPEILAINAASLSLCLSSIPFTTPVAAVQVGLINGNFILNPTSKEREESELQLTVC 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
            T + V+M+E    ++ EDV+L AI FG + C+ +I+   +  +   KE +V +  K   
Sbjct: 179 ATSERVMMIEAGGQEIPEDVMLAAIKFGFDSCQDIIKFQEEAMQRFGKEKMVPELYKPSK 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +LE E+ +     ++ + +I +K  R   +D++ +K+ + F  ++   N G+I  +  ++
Sbjct: 239 ELEIEIKEFAGAMIKEAMWITDKDERNSAMDEVNEKVYAEFEEKYPE-NVGDIKEIIYNL 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q +VVR ++L+   R D R  + VR IS +VG+L RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKEVVRDMLLNHHRRPDERAFDQVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGAVG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 DIQIIDGIGEEESKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+   D     +L
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLTREEVL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED    MDFKVAGT  GIT++Q+D KI G+S  ++  A+  A++ RLHIL+++S
Sbjct: 478 TDIQGIEDFFADMDFKVAGTVEGITSIQVDTKIKGLSFKVIEDAIMGARKARLHILDKIS 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +   R ++  + P+  I++I P++IR+VIG GGKVI  I+E+TG K++I +DGTV ++
Sbjct: 538 ECIPGPRGEVSTYAPKTSIISIDPEKIRDVIGAGGKVINKIIEETGVKIDIKEDGTVFVS 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    +  A  +I  +T   +V ++Y G+V K+  FGAFV     ++GL HIS+L   R
Sbjct: 598 STDHDGVNKAISIIEGLTKEVKVGEVYLGKVTKIATFGAFVEILPNKEGLCHISKLDKAR 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V K  DVV  GD + VK+ + D++G++ LS K    +  + 
Sbjct: 658 VNKVEDVVSVGDEILVKVTEIDNQGRVNLSRKDALTDDSEE 698


>gi|237805195|ref|YP_002889349.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273495|emb|CAX10411.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 695

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/695 (43%), Positives = 438/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GA+L    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KDKTLIFETGKIARQASGAILVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    + G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+ ++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEISR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             SD VKEGD + VKLL  +++G++KLS K   ++
Sbjct: 661 NISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695


>gi|108804255|ref|YP_644192.1| polynucleotide phosphorylase/polyadenylase [Rubrobacter
           xylanophilus DSM 9941]
 gi|123069114|sp|Q1AW48|PNP_RUBXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108765498|gb|ABG04380.1| Polyribonucleotide nucleotidyltransferase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 686

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/686 (43%), Positives = 430/686 (62%), Gaps = 8/686 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
            +EI    R + LETG++ARQ+ GAV A +G+T VL+T       + G  F PL+V+ +E
Sbjct: 2   RLEIPVGERAIVLETGKLARQAGGAVTARFGDTTVLSTATRSEEPRPGATFLPLSVDIEE 61

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  + GKIPGG+L+RE +P+E  IL +R+ DR IRPLF K Y  E QVI  V+  D E+ 
Sbjct: 62  RMSSAGKIPGGFLKREGKPSEKAILTARLTDRPIRPLFPKDYYYEVQVIGTVLVADQENP 121

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE-DQGSLDLFVSGTQD 183
             VVSMV ASAAL LS +PF GP+   +V    +G ++LNP   + ++  LD+ V+GT++
Sbjct: 122 YDVVSMVGASAALALSDIPFGGPIGAVRVGRHPDGGFILNPTYQQLEESDLDIVVAGTKE 181

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           A+ MVE  A +++EDVV++A+       +   EAI + A    +E    +    +   EE
Sbjct: 182 AITMVEAGAREVTEDVVVEALEVAQGVIREQAEAIERWAAEHGEEKQPFEEPGENPFVEE 241

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           +     E ++      ++  R + ID LK+++V   S E        ++     +Q +  
Sbjct: 242 LRGAYLERIKEGLISTDRRARHEAIDLLKEELVEGRSEEEVPL----VLDALAQLQKEAF 297

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + L+ + R D R  + +R  +A+  +L R HG+ LF RG+TQ +  + L      Q +
Sbjct: 298 RKLYLEDRKRTDLRAFDEIRPTTAEAHVLPRVHGTGLFTRGETQVLSSLALADLGLVQRL 357

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L       +M HY F P +TGE  R+G P RREIGHG LA RA+ PV+P   +FPY +
Sbjct: 358 DTLEPQTTKRYMHHYYFPPYSTGETGRLGPPRRREIGHGALAERALLPVIPSEEEFPYAI 417

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           RI+SE+ ES+GSSSMA+VCGS+LALMD GVPI  PVAG+AMGLVK+GDD++IL+DI G E
Sbjct: 418 RIISEVLESNGSSSMASVCGSTLALMDGGVPIKAPVAGVAMGLVKEGDDYVILTDIQGLE 477

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH+G MDFKVAGT  GITA+QMDMKI G+S  ++  AL+QA+RGRL IL+ M + ++E R
Sbjct: 478 DHMGDMDFKVAGTRDGITALQMDMKITGVSAELLKEALEQARRGRLQILDIMREEIAEPR 537

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++ +  PRVE++ IP D+I  +IG GGK I  + ++ G  +++++DGTV +A      +
Sbjct: 538 PEISDHAPRVEVIQIPTDKIGLLIGPGGKTINALQDEYGVNISVENDGTVYVAGVEGMSV 597

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS--TERVAKTS 661
           +AA   I+ +T   E   IY G+VVK  +FGAFV     RDGL+HIS+L+   +RV +  
Sbjct: 598 KAAVSAIKGMTKEVEAGDIYVGKVVKTTNFGAFVELTPGRDGLLHISRLAPGKQRVRRVE 657

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSM 687
           DV+ EGD V V++L+ D + +I L M
Sbjct: 658 DVLNEGDVVKVRVLEIDKQNRISLEM 683


>gi|51473686|ref|YP_067443.1| polynucleotide phosphorylase/polyadenylase [Rickettsia typhi str.
           Wilmington]
 gi|81390070|sp|Q68WN1|PNP_RICTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51459998|gb|AAU03961.1| Polynucleotide phosphorylase [Rickettsia typhi str. Wilmington]
          Length = 745

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/691 (46%), Positives = 477/691 (69%), Gaps = 3/691 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T  + W  + L++ TG+IARQ+D AV    G +++L T V    +KDG  FFPLT
Sbjct: 1   MFNEITKSVIWNRQVLEISTGKIARQADAAVTVKMGNSILLCTCVVANKVKDGIGFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E  Y+ GKIPGG+L+RE + ++ EIL+SR+IDR IRPLF + + +ET +  +V+ +
Sbjct: 61  INYREMAYSAGKIPGGFLKREGKASDKEILVSRLIDRPIRPLFHQAFIHETHITCSVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D E+   +++++ ASAAL +S  P+   V  ++V  ING++VLNP L+  + S LDL V+
Sbjct: 121 DPETPVDILAIIGASAALSISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+D+V+MVE EA+ LSE+ +L+AI FG    + VI+ I + AK   K    +     S 
Sbjct: 181 GTKDSVMMVESEAHLLSEEKMLEAIKFGFENFQTVIKLIKEFAKEAKKPKFEMQDLYPSS 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--SSEHSSWNEGEIVSVFED 297
           L++E+ ++  +++  +  I  K  R   +  + +K++++F    E+  +N  +I S  + 
Sbjct: 241 LKKEIGKLFAKEIEQAFAIKSKQERNANLALIHEKVLTHFVCDIENKKYNNYQIESTLKA 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I A ++R  +L++ +R+DGR +  +R I+ +VGLL   HGS+LF RG+TQ++V  T GT 
Sbjct: 301 ISADILRNKILEQNIRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ VDSL G  +  FM++Y F P +  E   M APSRRE+GHG+LA RAI+P+LP   
Sbjct: 361 LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           QFPY++R+V+E TES+GSSSMATVCGSSLALM AGVPI  PVAGIAMGL+K+GD F ILS
Sbjct: 421 QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLIKEGDKFAILS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+ G MDFKVAGT  GITA+QMD+KI GI   I+ +AL+QA+ GRLHIL +M+K
Sbjct: 481 DIIGDEDYFGDMDFKVAGTSKGITALQMDIKISGIDFKIIQVALEQARHGRLHILEQMNK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           ++S+   +L +  P    + I  D+I+++IG GGK+I+ I E + AK++I DDGTV + +
Sbjct: 541 IISKPNSELSKNAPSSTTIKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSVYA 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   +I+ A + I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S  R+
Sbjct: 601 ADRDKIKVALDKIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISETRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            K S V+K+GD V VKL+ FD++GK KL++K
Sbjct: 661 DKVSSVLKQGDIVKVKLIGFDNKGKAKLTIK 691


>gi|218437998|ref|YP_002376327.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7424]
 gi|226702644|sp|B7KIQ3|PNP_CYAP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218170726|gb|ACK69459.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7424]
          Length = 718

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/701 (42%), Positives = 442/701 (63%), Gaps = 16/701 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L+ G +A Q+ G+VL   G+T VL T     S ++G DF PLTV
Sbjct: 1   MEEFDRSISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKAAS-REGVDFLPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER YA G+IPGG+LRRE RP E  ILISR+IDR +RPLF    +++ QVI   +  D
Sbjct: 60  DYEERLYAAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPHWLRDDIQVIATTLSMD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            E  P V+++  AS A++L+ +PF GP+   +V  +   +++NP   E   G LDL V+G
Sbjct: 120 EEVPPDVLAVTGASLAVILAEIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           + D V+MVE  ANQL E  +++AI FG+   + +I A   + +    +   +D    ++ 
Sbjct: 180 SPDGVVMVEAGANQLPEQDIIEAIDFGYEAVRDLIAAQQDVMETLGVKLATLDPPPVNES 239

Query: 240 LEEEMSQMIKEDLRVSC--FIPEKYVRCKQIDDLK----KKMVSYFSSEHS-----SWNE 288
           + E +     ++++     +  +K  R   +D++K    +++++    E       +   
Sbjct: 240 VLEFIKTQTADEIKKVLSQYDLDKNGRDTALDEIKAAKVEEVIASLPEEDPIKVATTEEA 299

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQ 347
             + ++F+D+  K++R+ ++++ VR+DGR  + VR IS +VGLL  R HGS LF RG TQ
Sbjct: 300 KLVDTLFKDVTKKLMRSQIINEGVRVDGRQLDQVRPISCRVGLLPPRVHGSGLFCRGLTQ 359

Query: 348 AIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            + + TLGT  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA 
Sbjct: 360 VLSIATLGTPGDAQELADDLHPEDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAE 419

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL
Sbjct: 420 RAILPVLPTQQEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGL 479

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +KDGD+  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +I+  A++QA+ 
Sbjct: 480 IKDGDEVRILTDIQGIEDFLGDMDFKVAGTDNGITALQMDMKITGLSMDIVAKAIEQARP 539

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL++M  V+   R +L  + PR+  M I PD I  VIG GGK ++ I EQT  K++
Sbjct: 540 ARLHILDKMLSVIDSPRPELSPYAPRLLTMRIDPDMIGLVIGPGGKTVKSITEQTKTKID 599

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           IDDDGTV I++S   + E A+++I ++T      ++Y G+V +++  GAFV     ++G+
Sbjct: 600 IDDDGTVTISASEAEQAERAKQLIHNMTRKLNEGEVYVGRVTRIIQIGAFVEIMPGKEGM 659

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +HISQL+  RV K  D +  GD V VK+ + D++G++ L+ 
Sbjct: 660 IHISQLAEGRVGKVEDELAVGDEVVVKVREIDNKGRLNLTR 700


>gi|218133599|ref|ZP_03462403.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990974|gb|EEC56980.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
           43243]
          Length = 742

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/696 (39%), Positives = 413/696 (59%), Gaps = 9/696 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M    +  +E AGR L ++ GR+  Q++GA L  YG+TVVL+T    +  ++G DFFPL+
Sbjct: 45  MEMYKSYSMEIAGRTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLS 104

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 105 VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSV 164

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E  P +V+M+ AS A  +S +PF+GP    Q+  I+G++V+NP  ++   G L L V+
Sbjct: 165 DPECRPELVAMLGASIATCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRLTVA 224

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            T   V+M+E  AN++ E  +++AI   H   + +IE I+K+     K     +S     
Sbjct: 225 STSQKVIMIECGANEVPEARMIEAIYKCHEVNQTIIEFINKIVAEVGKPKHSYESCAIPQ 284

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++ + M  ++  E++ V+ F  +K  R   ID + +K    F+   +      +      
Sbjct: 285 EMFDAMKAIVTPEEMEVAVFTDDKQTREANIDAITEKFKEAFA--DNEEWLAILGEAVYQ 342

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR    +R ++A++ L+ R HGS++F RG TQ   VVTL   
Sbjct: 343 YQKKTVRKMILKDHKRPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPL 402

Query: 358 EDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q VD L        ++ HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 403 SEAQKVDGLDENVTAKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSE 462

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI + VAGI+ GLV     DD+I
Sbjct: 463 EEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGDTDDDYI 522

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL I++ 
Sbjct: 523 VLTDIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARLFIMDT 582

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M   ++E R ++G++ P++    I P +I +V+G  GK I  I+E+TG K++I+DDG V
Sbjct: 583 CMKPAIAEPRKEVGKYAPKIIQTKIDPAKIGDVVGQRGKTINAIIEETGVKIDINDDGFV 642

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I       ++ A + I +I    E  +I++G+VV + +FGAF+ F   ++G+VHIS+++
Sbjct: 643 SICGVESEGMQKALKYINTIVTDFEEGQIFEGKVVSIKEFGAFIEFAPGKEGMVHISKIA 702

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            ER+    DV+  GDTV    L  D  G+I  S+K 
Sbjct: 703 KERINHVEDVLTLGDTVRCICLGKDKMGRISFSIKD 738


>gi|42526551|ref|NP_971649.1| polynucleotide phosphorylase/polyadenylase [Treponema denticola
           ATCC 35405]
 gi|81412546|sp|Q73NW1|PNP_TREDE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|41816744|gb|AAS11530.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
           35405]
          Length = 698

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/697 (42%), Positives = 458/697 (65%), Gaps = 6/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V  +     L LETG +A+Q++G++ A Y  + +LAT+      ++G D+ PLTV+Y 
Sbjct: 3   KRVTYKIGEHDLILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF+K +  E Q++   +  D+ +
Sbjct: 63  EKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P +++++A+SAA+ +S +PF+GPV  A+V Y NG+Y++NP   + +   +++ V+GT++
Sbjct: 123 PPDILAVIASSAAVHISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIVVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            + MVE  AN++SE+V+L A+   H   K + +    L ++  KE + +   +   + ++
Sbjct: 183 GITMVEGGANEVSEEVMLTALEKAHEMIKSLCKMQEDLRELAGKEKLPLVPLEAELENKQ 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301
            +       L  + ++  K  R ++ D +KK++   ++ +           ++FE+++  
Sbjct: 243 AIYDEAFPRLSKTLYLSTKMERREESDKVKKELAEKYAEQLEDEIQLKLFNALFEEMEYN 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++RT +LDK +R+DGR ++ +R I+ ++G+L R HGS++F RG+TQ++ VVT+GT  DEQ
Sbjct: 303 ILRTNILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             D + G +R +F++HYNF P + GEV R+G   RREIGHG LA R+++P++P+  +FPY
Sbjct: 363 IYDDIEGDRRENFILHYNFPPFSVGEVGRLG-TGRREIGHGNLAHRSLYPMVPEREKFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDIS 480
           T+R+VSE+ ES+GSSSMATVC  +L+++ AGVP+ KPVAGIAMGL+ +G D + ILSDI 
Sbjct: 422 TVRVVSEVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITEGNDRYAILSDIL 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+EDHLG MDFKVAGT  GIT  QMD+KI G+S  IM  AL QAK GR+HIL  M++ +S
Sbjct: 482 GEEDHLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQCIS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
               +L ++ PRVE+M IP D+I  +IG GGK ++ I ++    +N ++DGTV I S   
Sbjct: 542 APNAELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISDKYNVTINTENDGTVTIYSKDG 601

Query: 601 AEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A+ +++ IT  PEV  +Y G V K+MDFGAFV     ++GL HIS+LS  RV K
Sbjct: 602 TSDLKGAKSIVKGITSDPEVGMVYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRSRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            SDV+KEG  + VKLL+ D  G++ LS     +   K
Sbjct: 662 VSDVLKEGQEIPVKLLEIDKLGRLNLSYVDALEERSK 698


>gi|255349247|ref|ZP_05381254.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           70]
 gi|255503784|ref|ZP_05382174.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           70s]
          Length = 695

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/695 (43%), Positives = 438/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KNKTLIFETGKIARQASGAVLVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+T++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             S  VKEGD + VKLL  +++G++KLS +   ++
Sbjct: 661 NISGFVKEGDKLAVKLLSINEKGQLKLSHRATLED 695


>gi|229815242|ref|ZP_04445578.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
           13280]
 gi|229809252|gb|EEP45018.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
           13280]
          Length = 714

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/690 (41%), Positives = 422/690 (61%), Gaps = 10/690 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +   +  G+    E G +A+Q+ GA L   G++ VL TVV  +  K   DFFPLTV++ E
Sbjct: 5   SKTFDLFGKTYVFEVGELAKQATGAALVKQGDSTVLTTVVVSKERK-NYDFFPLTVDFNE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGGYL+RE RP+E   L +RMIDR IRP F   ++NE QV+   +  D ++ 
Sbjct: 64  KMYAAGRIPGGYLKREGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             V+ ++ AS A+ + G+PFEGP+   ++      G++++NP  +E +   LDL ++GT+
Sbjct: 124 VDVICVMGASLAMTIGGVPFEGPLACVRIGRDKETGEFIVNPTYEERENSDLDLELAGTR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKL 240
           D + MVE  A ++SE+ +L A+ FG        +A  +  +   +   PIV       + 
Sbjct: 184 DFISMVEAGAEEVSEEDMLAAMQFGQEAIGAFCDAQLEFVEEWERVNGPIVKREYPLDQP 243

Query: 241 EEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            EE+   I    +++  +    +K  R  ++ +LK+ + + F+ E     E EI    + 
Sbjct: 244 VEEVHDRIFAHYDEMAAALRDADKLSRQDKVAELKEAIKAEFTEEEQLVWEREIPVNLKK 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R ++++   R+DGR +  +R I  +   L   HGS LF RG TQ + V++LG  
Sbjct: 304 LEKTAMRRMVVETGERVDGRTAAEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGML 363

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++       +M HYNF P  TGE  RMG P RREIGHG LA RA+ PVLP   
Sbjct: 364 NEGQRLDTIEPVDGKRYMHHYNFPPYCTGETGRMGTPKRREIGHGNLAERALIPVLPDEN 423

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSE+ ES+GSSSMA+ CGS LALMD GVPI +PV+GIAMGL+++    ++LS
Sbjct: 424 EFPYAIRVVSEVMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLS 483

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT+ GITA+QMD K  G++ +I+  AL+QAK GR +IL++M +
Sbjct: 484 DIQGLEDFLGDMDFKVTGTEKGITALQMDNKATGLTFDILRTALEQAKEGRAYILDKMLE 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+   R +     P+++ + IP + IR+VIG GG+ IRGI ++TGA ++I +DGTV +  
Sbjct: 544 VVPGPREETRTTAPKIQCITIPTENIRDVIGKGGETIRGIQDETGASIDIHEDGTVYVGG 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                + AA E I  I  VPEV + Y G+VV +  FGAFV+    +DGL+HIS+++  RV
Sbjct: 604 V-GESVAAAIERIELIVKVPEVGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAQGRV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            K  DV+  GD V VK+++ DDRGKI L  
Sbjct: 663 EKVEDVLNVGDEVKVKVIEIDDRGKISLDR 692


>gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
 gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
          Length = 693

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/695 (41%), Positives = 447/695 (64%), Gaps = 7/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ + ++AG+ LK++ G++A Q+ GA L  YGET VL TVV     K+  DFFPLT
Sbjct: 1   MRQTYSFKKDFAGKTLKIDIGKVAWQATGAALVQYGETTVLVTVVASEEKKEDVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y ER YA GKIPGG+ +RE +PTE EIL +R+IDR +RPLFSK ++NE QVI+ V+ +
Sbjct: 61  VEYVERLYAAGKIPGGFFKREGKPTEPEILFARLIDRPLRPLFSKDFRNEVQVIVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D E+S  + S++ AS A+ML+GLPF+GP+   +V +   ++ +NP +      L DL V+
Sbjct: 121 DHENSTDIPSIIGASCAIMLAGLPFKGPIGAVRVGWDGKEWYINPSVALSNSLLLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLM+E +  ++ E++ L+ II  H +   VI    ++  M    P   +    ++
Sbjct: 181 GTKDAVLMIEGDGKEVPEEIFLEGIIRAHEQIGEVINFQEEILSMVNPVPFNYEPFVVNE 240

Query: 240 -LEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            L++++ + +  + +R + F P K  R K ++DLKK+++ +F   +      +I  +   
Sbjct: 241 NLKKDVLEYVTVDQIRDAIFTPSKSERQKALEDLKKRVIEHFKPIYGEIT-AQIDEIINQ 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
               ++  V+L++K R+DGR    +R +S +VG+L R HGS+LF RG+TQ + VVTLG  
Sbjct: 300 EAKAILTKVILEEKRRVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAG 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           E EQ ++S+  ++   ++ HYNF P + GE   +  P RREIGHG LA RA+ P++P+  
Sbjct: 360 E-EQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIGHGALAERALLPLIPKEE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+  S+GS+SMA+VCGSSL+LMDAGVPI   VAG+AMGL+K+G+ F +L+
Sbjct: 419 EFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGEKFEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFK+AGT +GITA+Q+D+K+ G+S  I+   L+QAK  R  IL+ M K
Sbjct: 479 DIQGLEDALGGMDFKIAGTKNGITAVQLDIKVDGLSYEIIEKTLKQAKEARYQILDIMEK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S+ R ++  + PR+ ++ I P++I ++IG  GK I+ I+E+T   +NI  +G V I++
Sbjct: 539 TISQPRPEISPYAPRIMVLEINPNKIGDLIGPSGKNIKKIIEETHTTINIKPEGLVYISA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 E A +M++  T   +   I+ G+V++V D+GAFV     + GL+HIS+  T   
Sbjct: 599 PDQESAEKAAQMVQEYTRDIKEGDIFLGKVIRVTDYGAFVEILPGKIGLLHISKYKTTGT 658

Query: 658 AK--TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  T + +  GD + +K+   D  G+I LS K +
Sbjct: 659 GKNQTREEINLGDEILIKVDSIDPSGRISLSRKDL 693


>gi|331091291|ref|ZP_08340132.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404738|gb|EGG84277.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 696

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 424/700 (60%), Gaps = 11/700 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+
Sbjct: 1   MF--KKFEMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +     L L V+
Sbjct: 119 DPDCSPELTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T+D V+M+E  AN++ ED +++AI   H   + VI+ I  +   C K      S     
Sbjct: 179 STRDKVIMIEAGANEVPEDKMIEAIFAAHEVNQQVIQFIDTIVAECGKPKHEYTSCAVPE 238

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L E M +++  E++ V+ F  EK VR + +  +++K+   F +++  W E  +      
Sbjct: 239 ELFEAMKEIVTPEEMEVAVFTDEKQVREENLRVIREKLEEAF-ADNEEWLE-ILGEALYQ 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR  + +R ++A++ L+ R HGS++F RG TQ   V TL   
Sbjct: 297 YQKKTVRKMILKDHKRPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQICTVTTLAPL 356

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 357 SEAQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            +FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD++
Sbjct: 417 EEFPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLVTGDTDDDYL 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K+ R +IL+E
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTKQARTYILDE 536

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M   ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I D+G+V
Sbjct: 537 VMHNAIAEPREEVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDEGSV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +       +E A +MI  I    E  ++ +G+V+ + +FGAF+ F   ++G+VHIS++S
Sbjct: 597 SVCGVDAKAMEEAMKMIAIIVTDFEAGQVLEGKVISIKEFGAFLEFAPGKEGMVHISKIS 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ER+    DV+  GD V V  L  D  G+I  SMK V + 
Sbjct: 657 KERINHVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVVEE 696


>gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7425]
 gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425]
          Length = 715

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/696 (42%), Positives = 428/696 (61%), Gaps = 18/696 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +I + GR + +  GR A Q+ G V+   G+T VL T       ++G DF PL V+Y+ER
Sbjct: 6   KKISFDGRDIHITIGRFAPQAGGTVMIRSGDTAVLVTATRAA-AREGIDFLPLLVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E   LISR+IDR +RPLF    +++ QV+   +  D +  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++L+ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V
Sbjct: 125 DVLAVTGASVAVLLAQIPFNGPMAAVRVGLVGDDFIINPTYSEIEAGDLDLVVAGSPAGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKL 240
           +MVE  ANQL E  V++AI FG+   + +I A  +L          ++P   D    + +
Sbjct: 185 VMVEAGANQLPEQDVIEAIDFGYEAVRDLIRAQQELLTELGIALVQQDPPPRDPTLENFI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS--------SWNEGEIV 292
            E     +KE L  + F  +K VR   +D++K  +                 + +   + 
Sbjct: 245 RERAEAPVKEIL--ARFEKDKNVRDAALDEVKAAIEQAIKELEETDPVRVAAALDAKALS 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVV 351
           + F+++   ++R  +++  VR+DGR  + VR IS  VG+L R  HGS+LF RG TQ +  
Sbjct: 303 NTFKEVTKTLMRRQVIEGNVRVDGRKLDEVRPISCLVGVLPRRVHGSALFNRGLTQVLSA 362

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           VTLGT  D Q +D L   +   ++ HYNF P + GE   M +P RREIGHG LA RA+ P
Sbjct: 363 VTLGTPGDAQELDDLHPDESKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERALVP 422

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   QFPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+GD
Sbjct: 423 VLPPQDQFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLTKPVSGAAMGLIKEGD 482

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A+QQAK  R+HI
Sbjct: 483 EVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLQVVAEAIQQAKPARMHI 542

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M + LS+ R +   F PR+  + I P+ I  VIG GGK ++GI E+TGAK++I+D G
Sbjct: 543 LEKMLETLSQPRQETSPFAPRLVNLKIDPELIGLVIGPGGKTVKGITEETGAKIDIEDSG 602

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + I++S   + + AR +I  +T       +Y G+V +++  GAFV F   ++G++HISQ
Sbjct: 603 MITISASDEDKAKRARSIIMGMTRKLSAGDVYVGKVTRIIPIGAFVEFLPGKEGMIHISQ 662

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           L+  RV K  D V  GD V VK+ + D RG+I L+ 
Sbjct: 663 LADYRVNKVEDEVSVGDEVIVKVREIDGRGRINLTR 698


>gi|255507465|ref|ZP_05383104.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           D(s)2923]
 gi|289525888|emb|CBJ15370.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           Sweden2]
 gi|296435474|gb|ADH17652.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           E/150]
 gi|296439191|gb|ADH21344.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           E/11023]
          Length = 695

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/695 (43%), Positives = 439/695 (63%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V ++   + L  ETG+IARQ+ GAVL    ET V ++     SL +  DF P  V
Sbjct: 3   FETFSVALD-KNKTLIFETGKIARQASGAVLVKMNETWVFSSACAA-SLSEAVDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + G+  GG+L+RE RP+E EIL+SR++DRS+RP F      + QV+  V  +D
Sbjct: 61  DYQEKFSSAGRTSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  ASAAL +S +P    V G +V  + G++V+NP  DE   S LDL ++G
Sbjct: 121 GKTLPDPLAICGASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDLVMAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T  AVLM+E   + L+E+ VL+AI+FG      + +AI    K   K+       D  + 
Sbjct: 181 TASAVLMIEGHCDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPED 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFEDI 298
           ++  +S  I+E    +    +K    +   +L++ +++     E+S ++   + + F+  
Sbjct: 241 VQNVVSDFIREKFEKALSFRDKEALEQASKELEESVIANLVQEENSDFSLLNVKAAFKTA 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++  +R ++ D  +R+DGR +  +R IS +   L RTHGS LF RG+TQ++ V TLG   
Sbjct: 301 KSNQMRALIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGEN 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+  VLP+T++
Sbjct: 361 MAQRFEDLNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSR 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+ S ITES+GSSSMA+VCG  LALMDAGVPI  PVAGIAMGL+ D D  IILSD
Sbjct: 421 FPYIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG EDHLG MDFKVAGT  GITA QMD+KI GI+  IM  AL QAK+GR HILN M++V
Sbjct: 481 ISGIEDHLGDMDFKVAGTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           L+  +  + ++ PR+E M I   +I  VIG GGK IR I+E++GA+V+I+DDG + IA+S
Sbjct: 541 LASPKGTVSKYAPRIETMQINTSKIATVIGPGGKQIRQIIERSGAQVDINDDGVINIAAS 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I  A+E+I  +T   EV K+Y G+V  +  FG FV     ++GL HIS+LS ++V 
Sbjct: 601 TQESINKAKELIEGLTGEVEVGKVYNGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVD 660

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             S  VKEGD + VKLL  +++G++KLS +   ++
Sbjct: 661 NISGFVKEGDKLAVKLLSINEKGQLKLSHRATLED 695


>gi|329767316|ref|ZP_08258841.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
           M341]
 gi|328836005|gb|EGF85696.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
           M341]
          Length = 695

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/690 (45%), Positives = 457/690 (66%), Gaps = 8/690 (1%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF D      +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPL
Sbjct: 1   MFQDKKVYTTQWAGKTLTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPL 59

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNY+E+ YAVGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+ 
Sbjct: 60  TVNYEEKMYAVGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLS 119

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            + +  P + +M+ +S +L +S +PF+GP+ G  V Y++G+YV+NP +++ +  ++DL V
Sbjct: 120 VEYDCDPVMAAMLGSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKV 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT DA+ MVE  A ++SE+++L+AI+FGH E K +I    ++     +E + ++ K   
Sbjct: 180 AGTIDAINMVEAGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIVDEIGQEKMAVELKVID 239

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293
           + + +E+  M    ++ +  I +K  R + I  +K+K++  F  + +  +E +IV     
Sbjct: 240 ETIYKEVLSMALSQMKEAIAIKDKQERDEAISAVKEKVLEVFEEKATDEDELDIVKEAKL 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + I    VR  + + K+R DGR    +R ++++V +L RTHGS+LF RG TQ++ VVT
Sbjct: 300 SLDKIVKDEVRREITEDKIRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ +D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+
Sbjct: 360 LGNLSDEQIIDDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + +
Sbjct: 420 PSKEDFPYTIRIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL 
Sbjct: 480 TILTDIQGMEDHLGDMDFKVAGTSEGITALQMDIKIDGLSEQILKESLEQARVGRLQILE 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M+ ++SE R ++  F P+++I+ I P++I++VIG GGKVI  I+E+TG K++I+ +G V
Sbjct: 540 HMNSIISEPRQEVSTFAPKIKIIKIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQNGDV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+S  +  I  A E+I +IT   EV +IY  +V ++  FGAFV      D LVHIS+L+
Sbjct: 600 FISSPEIEGINKAIEIIENITREAEVGEIYLAEVKRIEKFGAFVELFPGVDALVHISKLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
            ERV K  DVVK GDT+ VK++  D++G++
Sbjct: 660 EERVNKVEDVVKVGDTLKVKVIKIDEKGRV 689


>gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
           HTCC2155]
 gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
           HTCC2155]
          Length = 696

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/696 (40%), Positives = 440/696 (63%), Gaps = 6/696 (0%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M  + +V ++    RP+ +ETG++A  ++ AV  T GETVVL T       + G DFFPL
Sbjct: 1   MSKIGSVTVDLGDNRPITIETGKMALLANAAVTVTQGETVVLVTACSSA-PRAGIDFFPL 59

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A GK  GG+++RE+RP+E+EIL SRM DR +RPLF K + +E Q+   V+ 
Sbjct: 60  MVAYREKYSAAGKFLGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLS 119

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
           +D  + P  ++M+ +SAALMLS LPF+GP+   +V  ++G++V NP  ++ + S L+L  
Sbjct: 120 YDKVNDPDTLAMLGSSAALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIY 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SGT    +M+E + ++LSE+ + +A+ +  ++ + + +A  +L     K      +    
Sbjct: 180 SGTPGKTIMIEGDCDELSEERLFEALKYADSKVEVMAKAQLELQATFGKAKKDYATDKIE 239

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + ++  ++  I   +  +C + ++  R   +D +   +     ++      GE+   +  
Sbjct: 240 EDVKAAVATAISGKIDEACLVIDRTERGAALDAVYATVEEALKAQFDEERHGELKEAYSH 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +    +R +++++  R DGR +E +R +SA+  L+ RTHGS+LF RG+TQA+V VTLG  
Sbjct: 300 LIEMNIRRLIIEEGKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDA 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +  Q  +++ G     F +HYNF   + GE  R+     REIGHG LA RA+  ++P  A
Sbjct: 360 KAAQSAETIRGRYDKTFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMP--A 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            +PYT+R++SE+  S+GS+SMA++CG SLALMDAGVP+ K VAGI++GLV++ D +++++
Sbjct: 418 DYPYTVRVISEVMGSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKYVMIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA Q+D+KI G+S ++M  A+ + K  R+ IL+ M  
Sbjct: 478 DILGSEDHYGDMDFKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDG 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS ++ ++ +  P+V  M I P++I  +IG GGK I+ I E+TGA++N++DDGTVK+ +
Sbjct: 538 CLSSAQEEISDHAPQVHAMKINPEKIGALIGPGGKHIKAICEETGAEINVEDDGTVKVFT 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++AA E + S    PE  KIY+G VV V +FGAFV   G   GL+HIS+L+  RV
Sbjct: 598 ADKTALKAAIEQVESYCFEPEAGKIYRGVVVSVKEFGAFVEIAGGHQGLLHISELADYRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K +DVV EGD V VK+L+ DDRG+++LS K   + 
Sbjct: 658 EKVTDVVNEGDKVSVKILEIDDRGRMRLSRKAALEE 693


>gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 695

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/690 (45%), Positives = 458/690 (66%), Gaps = 8/690 (1%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF D      +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPL
Sbjct: 1   MFQDKKVYTTQWAGKTLTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPL 59

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNY+E+ YAVGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+ 
Sbjct: 60  TVNYEEKMYAVGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLS 119

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            + +  P + +M+ +S +L +S +PF+GP+ G  V Y++G+YV+NP +++ +  ++DL V
Sbjct: 120 VEYDCDPVMAAMLGSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKV 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT DA+ MVE  A ++SE+++L+AI+FGH E K +IE   ++     +E + ++ K   
Sbjct: 180 AGTSDAINMVEAGAKEVSEEIMLNAIMFGHEEIKRLIEFQQQIVNEIGQEKMAVELKVID 239

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293
           + +  E+  M    ++ +  I +K  R + I  +K+K++  F    ++ +E +IV     
Sbjct: 240 ETIYNEVLSMALSQMKEAIAIKDKQERDEAISAVKEKVLEVFEERATAEDELDIVKEAKL 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + I    VR  + + KVR DGR    +R ++++V +L RTHGS+LF RG TQ++ VVT
Sbjct: 300 SLDKIVKDEVRREITEDKVRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ +D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+
Sbjct: 360 LGNLSDEQIIDDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + +
Sbjct: 420 PSKEDFPYTIRIVSEILESNGSSSQATICSGSMALMAAGVPIKSQVAGIAMGLVKKDEHY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL+
Sbjct: 480 TILTDIQGMEDHLGDMDFKVAGTAEGITALQMDIKIDGLSEQILKESLEQARVGRLQILD 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M+ +++E R ++  F P+++I+ I P++I++VIG GGKVI  I+E+TG K++I+ +G V
Sbjct: 540 HMNSIIAEPRQEVSTFAPKIKIIKIKPEKIKDVIGSGGKVINEIIEKTGVKIDIEQNGDV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+S  +  I  A E+I +IT   EV +IY  +V ++  FGAFV      D LVHIS+L+
Sbjct: 600 FISSPEIEGINKAIEIIENITREAEVGEIYLAEVKRIEKFGAFVELFPGVDALVHISKLA 659

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
            ERV K  DVVK GDT+ VK++  D++G++
Sbjct: 660 EERVNKVEDVVKVGDTLKVKVIKIDEKGRV 689


>gi|154506293|ref|ZP_02043031.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
 gi|153793432|gb|EDN75852.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
          Length = 718

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/696 (40%), Positives = 416/696 (59%), Gaps = 9/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       +DG DFFPL+V Y 
Sbjct: 25  KKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYN 84

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D + 
Sbjct: 85  ERLYAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDC 144

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   + +   L L V+ T++
Sbjct: 145 SPELTAMLGAAIATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVASTKE 204

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ E  +++AI   H   + VI  I  +   C K      S     +L E
Sbjct: 205 KVIMIEAGANEVPEAQMIEAIFAAHELNQKVIAFIETIVAECGKAKHEYTSCAVPEELFE 264

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++   ++  + F  +K  R + I  + +K+   F+   +      +       Q K
Sbjct: 265 AIKEIVPPAEMEEAVFTDDKQTREENIRVITEKLEEAFAE--NEEWLAVLGEAVYQYQKK 322

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR  + +R ++A+  L+ R HGS++F RG TQ   V TL    + Q
Sbjct: 323 TVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTVTTLAPLSEAQ 382

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+FP
Sbjct: 383 RIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFP 442

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L+D
Sbjct: 443 YAIRTVSETFESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLVTGETDDDYLVLTD 502

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E M+K
Sbjct: 503 IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVMNK 562

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V I  
Sbjct: 563 AIAEPRKEVGTYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSICG 622

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    +E A ++I +I    E  ++++G+V+ + +FGAF+ F   ++G+VHIS++S ERV
Sbjct: 623 TEKEAMEKAAKLIATIVTDFEAGQLFEGKVISIKEFGAFLEFAPGKEGMVHISKISKERV 682

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K  DV+  GD V V  L  D  G+   SMK V ++
Sbjct: 683 NKVEDVLNIGDVVKVVCLGKDKMGRFSFSMKDVAED 718


>gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM
           245]
 gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM
           245]
          Length = 736

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/720 (44%), Positives = 463/720 (64%), Gaps = 28/720 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-LKDGQDFFPLTV 61
           +    I+   G+ + +ETG++A+Q+DG+V+   G+T+VLATVV  +      QD+FPL V
Sbjct: 5   IINKAIDLGQGKIISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYFPLQV 64

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+  A GK PGG+ +RESRP+E EIL +R+IDR++RPLF   Y  ETQ+I+ V+  D
Sbjct: 65  EYREKYSAAGKFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTVISSD 124

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
             +   V+  +AASAA+M+S +PF   +   +V  ING++++NP ++E     LD+ + G
Sbjct: 125 QINDADVLGGLAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDICIGG 184

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T D + M+E E  ++SE  +LDAI FGH+  + +    +++A   AK            +
Sbjct: 185 TTDTICMLEGEMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAEVAKPARPFAPAVIPSE 244

Query: 240 LEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMV----SYFSSEHSSW-------- 286
           L + +  + +  LR   + P  K  R +Q   + ++++     +F +  S          
Sbjct: 245 LTDLVRGLCETRLRELAYTPLRKEDRAEQTAAIYREIIQSTVEHFKAAISPEEIQADPSK 304

Query: 287 ----NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
               NE  I      ++ KV+R ++LD   R+DGR  E VR IS ++G++ R HGS+LF 
Sbjct: 305 ALCLNEHIIDEQIHAVEKKVMRHMILDDAKRLDGRTLEEVRPISIELGIIPRAHGSALFT 364

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V +TLGT++D Q VD+L+      FM+HYNF P + GE  R+G+  RREIGHG
Sbjct: 365 RGETQALVTITLGTKKDAQSVDNLTNNADKKFMLHYNFPPFSVGETGRIGSTGRREIGHG 424

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RAI  V P   +FPYT+RIVS+I ES+GSSSMA+VCG +LALMD GVPI KPV+GI
Sbjct: 425 NLAERAIKMVAPPEQEFPYTVRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKPVSGI 484

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G ++ +LSDI G+EDHLG MDFKV+GT  GITA QMD+KI G+  +I+  AL+
Sbjct: 485 AMGLIKEGSNYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILESALE 544

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+RGRLHIL++M + +  +R++L +F PR+  + +P D I  +IG GG+ IR I E+TG
Sbjct: 545 QARRGRLHILDKMEEAIPSARVELAQFAPRLTTIQVPVDAIGLIIGKGGETIRSITEETG 604

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD-FGAFVHFCG 641
           A++NI+DDGTV IA SS+    AA   I+++   PEV  IY G+V  V D  GAFV F  
Sbjct: 605 AEINIEDDGTVTIACSSVEGTHAALATIKTLLAKPEVGTIYLGKVRDVRDELGAFVEFLP 664

Query: 642 ARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF--DDR---GKIKLSMKVVDQNTG 695
             DGLVHIS++S TERVAK SD +K GD + VKL+D   D R    +  LSM+ V+ +  
Sbjct: 665 KTDGLVHISEISATERVAKVSDHLKIGDRIKVKLVDVRKDPRTGKTRFALSMRAVETDAA 724


>gi|298490374|ref|YP_003720551.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
 gi|298232292|gb|ADI63428.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
          Length = 718

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/697 (43%), Positives = 430/697 (61%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRS-QAREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ QVI   +  D +  P
Sbjct: 65  LYAAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIAFTLSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A +++ +PF GP+   +V  +   +++NP   E D G LDL V+G+ D V
Sbjct: 125 DVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIDAGDLDLIVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L +        + P  +D    + +
Sbjct: 185 IMVEAGANQLPERDIIEAIDFGYEAVRDLIQAQLDLVEELGLKIVQEAPPGVDQTLENYI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIV 292
            +  S  IK+ L  + F   K  R   +D +K  +   +   S E       + N   + 
Sbjct: 245 HDCASAEIKKIL--AQFALTKTERDAALDVVKDGIKAEIEALSEEDPIRVAATANSKALG 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
           + F+DI   ++R  +L+  VR+DGR  + VR +S QV +L  R HGS LF RG TQ +  
Sbjct: 303 NTFKDITKYLMRRQILEDNVRVDGRKLDQVRPVSCQVNVLPKRVHGSGLFNRGLTQVLSC 362

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            TLGT  D Q + D L   Q   ++ HYNF P + GE   M AP RREIGHG LA RAI 
Sbjct: 363 CTLGTPGDAQNLNDDLQVDQHKRYLHHYNFPPFSVGETKPMRAPGRREIGHGALAERAIL 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+G
Sbjct: 423 PVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  +L+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A+ QAK  RL+
Sbjct: 483 DEVRVLTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKISGLSLEVIAQAVHQAKAARLN 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M + +   RL+   F PR+  + I PD I  VIG GGK I+GI E+TGAK++I+DD
Sbjct: 543 ILDKMLQTIETPRLETSPFAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV I++      + AR +++ +T       +Y G+V +++  GAFV F   ++G++HIS
Sbjct: 603 GTVTISAVDEGRAKRARNIVQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V VK+ + D++G+I L+ 
Sbjct: 663 QLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTR 699


>gi|291523665|emb|CBK81958.1| polyribonucleotide nucleotidyltransferase [Coprococcus catus GD/7]
          Length = 697

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/696 (39%), Positives = 418/696 (60%), Gaps = 9/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +  +E AGR L++E G +A Q++GA L  YG+T VL+T       +DG DFFPL+V 
Sbjct: 4   EYKSFSMELAGRTLRVEVGHVAAQANGAALMYYGDTCVLSTATASEKPRDGIDFFPLSVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++E+ Y+VGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D 
Sbjct: 64  FEEKMYSVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLCVDQ 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
             SP + +M+ ++ A  +S +PF+GP    QV  ING++++NP  ++     L L V+ T
Sbjct: 124 TCSPELTAMLGSAIATCISDIPFDGPCAMTQVGMINGEFIINPSNEQKSVSDLALTVAST 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           ++ V+M+E  AN++ ED +++AI   H+  + +I+ I ++   C KE    +      +L
Sbjct: 184 REKVIMIEAGANEVPEDKMIEAIYAAHDVNQEIIKFIDQIVAECGKEKKDYEHYAIPEEL 243

Query: 241 EEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              M ++   E +  + F  EK  R   I  +K K+   F+ +        I       Q
Sbjct: 244 NAAMKELFPPEAMEEAVFADEKQTRDANIRVIKDKLAEAFADKEE--WLPLIDDAVYQYQ 301

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L    R DGR  + +R ++A++ L  RTHGS++F RG TQ   + TL    D
Sbjct: 302 KKTVRKMILKDHKRPDGRAIDQIRPLAAEIDLFARTHGSAMFTRGQTQICTITTLAPLSD 361

Query: 360 EQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q VD L+       +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +
Sbjct: 362 AQKVDGLNEFVTSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEE 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIIL 476
           FPY +R VSE  ES+GS+S A++C S+++LM AGVPI KPVAGI+ GLV     DD+++L
Sbjct: 422 FPYAIRTVSETFESNGSTSQASICASTMSLMAAGVPIKKPVAGISCGLVTGDTDDDYLVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+++ K+ R +IL E +
Sbjct: 482 TDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRPIVEEAIRRTKQAREYILTEII 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +SE R ++GEF P+++ + I P +I +V+G  GKVI  I+++TG K++I DDG V I
Sbjct: 542 EPCISEPRKEVGEFAPKIQQIKIDPSKIGDVVGQKGKVINQIIDETGVKIDITDDGAVSI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                  I+ A +MI  I    E  +IY G+VV + +FGAF+ F   ++G+VHIS+L  +
Sbjct: 602 CGVDKVGIQKAIDMITMIVSDFEEGRIYTGKVVSIKEFGAFLEFAPGKEGMVHISKLDKK 661

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           R+    DV+  GD + VK +  D  G+I  S K  +
Sbjct: 662 RINHVEDVLTLGDVIKVKCMGKDKMGRISFSKKDAE 697


>gi|166030867|ref|ZP_02233696.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
           27755]
 gi|166029134|gb|EDR47891.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
           27755]
          Length = 707

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/698 (40%), Positives = 422/698 (60%), Gaps = 15/698 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y 
Sbjct: 15  KKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYN 74

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 75  ERMYAVGKIPGGFNKREGKASENAVLTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDC 134

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ A+ A  +S +PF+GP+   QV  ++G++V+NP  ++     L L V+ T++
Sbjct: 135 SPELTAMLGAAIATTISDIPFDGPISTTQVGLVDGEFVINPTAEQKAVSDLALTVASTRE 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFS 238
            V+M+E  AN++ E  ++DAI   H   + VI+ I  +   C K         +  + F+
Sbjct: 195 KVIMIEAGANEVPEQQMIDAIFKAHEVNQEVIKFIDTIVAECGKPKHSYESFAVPEELFA 254

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++E ++    E++  + F  +K  R + I  + +K+   F+   +      +       
Sbjct: 255 AMKEVVTP---EEMEEAVFTDDKQTREENIRVVTEKLEEAFA--DNEEWLAILPDAVYQY 309

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR  + +R ++A+V L+ R HGS++F RG TQ   + TL    
Sbjct: 310 QKKTVRKMILKDHKRPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICDICTLAPLS 369

Query: 359 DEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A
Sbjct: 370 EAQRLDGLDEAETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEA 429

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
            FPY +R VSE  ES+GS+S A+VC SS+ALM AGVPI   VAGI+ GLV     DD+++
Sbjct: 430 DFPYAIRTVSETFESNGSTSQASVCASSMALMAAGVPIKSAVAGISCGLVTGDTDDDYLV 489

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + ++ RL+I++E 
Sbjct: 490 LTDIQGLEDFFGDMDFKVAGTHEGITAIQMDIKIHGLTRAIIEEAIAKTRKARLYIMDEV 549

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK ++E R ++GE+ P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V 
Sbjct: 550 MSKAINEPRAEVGEYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVS 609

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I  +    +E AR++I +I    E  ++ +G+V+ + +FGAFV F   ++G+VHIS++S 
Sbjct: 610 ICGTDATGMEQARKLIYTIVTDFEAGQVLEGKVISIKEFGAFVEFAPGKEGMVHISKISK 669

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           ERV    DV+  GDTV V  L  D  G+   SMK V +
Sbjct: 670 ERVNHVEDVLTLGDTVKVVCLGKDKMGRFSFSMKDVAE 707


>gi|254444672|ref|ZP_05058148.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258980|gb|EDY83288.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
           DG1235]
          Length = 745

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/702 (39%), Positives = 420/702 (59%), Gaps = 12/702 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +    I      +   TG +A  + GAV  + GET +  +    +++++GQD+FPLTV+Y
Sbjct: 2   IQKHSITVDDLDITFSTGDVANLASGAVTVSTGETSLFVSATVAKTVREGQDWFPLTVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G+IPGGY +RE RP+E EIL SR+ DR  RPLF K + NE Q+I  V+  D  
Sbjct: 62  REKYTAAGRIPGGYFKREGRPSEKEILTSRLCDRPCRPLFPKGFLNEVQIIGFVLSADQV 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           +   ++ +  ASAAL +S +P+ GP+   +V  I+G +V NP ++E     LDL   GT+
Sbjct: 122 NDADILMVNGASAALAISDIPWNGPIGAVRVGQIDGHFVANPTIEEQYASDLDLIYVGTE 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           D +LM+E  A+Q+SE+  L+A+ + H   +P+I  I +L +   KE            + 
Sbjct: 182 DEMLMIEGSADQISEERFLEALEYAHKAIQPIIAGIKQLREEAGKEKKTFPLCVLEDDVR 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSWNEGEIVSVFEDIQA 300
           + ++ ++ + +  +C   +K  R  +ID+LK         ++   +N  ++    E++  
Sbjct: 242 QIVNSLVGDRIGEACAAGDKQERNAKIDELKVLAEGALQEKYGDDYNPAQLNMAMEELLE 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
              R  +LD  VR  GR    +R++ +QVG++ R HGS+LF RG+TQ +V+ TLG     
Sbjct: 302 HTYRKSILDNGVRSGGRKPNELRELKSQVGVVPRVHGSALFSRGETQGLVLTTLGPANQA 361

Query: 361 QYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D+++ G     FM+HYNF P + GE  R G P RREIGHG LA R++ PV+P    F
Sbjct: 362 QSLDAITGGPTTKSFMLHYNFPPFSVGETGRFGTPGRREIGHGALAERSLLPVVPSEDVF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------F 473
           PY++RI SEI  S+GS+SMA++CG  L+LMDAGVPI+ PVAGI++GLV + D+       
Sbjct: 422 PYSIRISSEIMASNGSTSMASICGGCLSLMDAGVPITDPVAGISVGLVSEFDENGKPAKH 481

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G+EDH G MDFK+AGT +GIT  Q+D+KI G+  +I+  ++ Q++  RL IL 
Sbjct: 482 HILTDILGEEDHFGDMDFKIAGTKNGITGFQLDLKINGLPFDIVKASVAQSREARLEILA 541

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--G 591
            M+  L   R ++    PR+  + I P++I  +IG GGK IR IVE TGA+V+I+DD  G
Sbjct: 542 NMATALEAPREEVAATAPRITTVQINPEKIGALIGPGGKNIRRIVEITGAQVDINDDNSG 601

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V + ++S   ++ A   I  +    E  KIY+G V    +FG FV     ++GLVHIS+
Sbjct: 602 RVNVYATSEEAMKRALHEIDLVCGEIEEGKIYRGIVKATKEFGCFVEVLPGQEGLVHISE 661

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           L+  RV  T DV K GD + VK L  D+RG+++LS K   + 
Sbjct: 662 LADFRVRNTEDVCKAGDEMVVKCLGVDERGRVRLSRKAALEE 703


>gi|325473489|gb|EGC76684.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
           F0402]
          Length = 698

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/697 (42%), Positives = 456/697 (65%), Gaps = 6/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             V  +     L LETG +A+Q++G++ A Y  + +LAT+      ++G D+ PLTV+Y 
Sbjct: 3   KRVTYKIGEHDLILETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE RP + EIL+SR+IDR +RPLF+K +  E Q++   +  D+ +
Sbjct: 63  EKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMIN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P +++++A+SAA+ +S +PF+GPV  A+V Y NG+Y++NP   + +   +++ V+GT++
Sbjct: 123 PPDILAVIASSAAVHISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIVVAGTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            + MVE  AN++SE V+L A+   H   K + +    L ++  KE + +   +   + ++
Sbjct: 183 GITMVEGGANEVSEAVMLTALEKAHEMIKALCKMQEDLRELAGKEKLPLVPLEAELENKQ 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQAK 301
            +       L  + ++  K  R ++ D +KK++   ++ +           ++FE+++  
Sbjct: 243 AIYDEAFPRLSKTLYLSTKMERREESDKVKKELAEKYAEQLEDEIQLKLFNALFEEMEYN 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++RT +LDK +R+DGR ++ +R I+ ++G+L R HGS++F RG+TQ++ VVT+GT  DEQ
Sbjct: 303 ILRTNILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQ 362

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             D + G +R +F++HYNF P + GEV R+G   RREIGHG LA R+++P++P+  +FPY
Sbjct: 363 IYDDIEGDRRENFILHYNFPPFSVGEVGRLG-TGRREIGHGNLAHRSLYPMVPEREKFPY 421

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDIS 480
           T+R+VSE+ ES+GSSSMATVC  +L+++ AGVP+ KPVAGIAMGL+ +G D + ILSDI 
Sbjct: 422 TVRVVSEVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITEGNDRYAILSDIL 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+EDHLG MDFKVAGT  GIT  QMD+KI G+S  IM  AL QAK GR+HIL  M++ +S
Sbjct: 482 GEEDHLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQCIS 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
               +L ++ PRVE+M IP D+I  +IG GGK ++ I ++    +N ++DGTV I     
Sbjct: 542 APNAELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISDKYNVTINTENDGTVTIYGKDG 601

Query: 601 AEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A+ +++ IT  PEV  +Y G V K+MDFGAFV     ++GL HIS+LS  RV K
Sbjct: 602 TSDLKGAKSIVKGITSDPEVGMVYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRSRVEK 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            SDV+KEG  + VKLL+ D  G++ LS     +   K
Sbjct: 662 VSDVLKEGQEIPVKLLEIDKLGRLNLSYVDALEERSK 698


>gi|228472909|ref|ZP_04057666.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275491|gb|EEK14268.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 727

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/690 (38%), Positives = 427/690 (61%), Gaps = 9/690 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DG+V+   G  ++LATVV ++   +G DF PLTV+Y+E+  A G
Sbjct: 14  DGRTISIETGKLAKQADGSVVVQMGNAMLLATVVANKEAGEGVDFLPLTVDYREKFAAAG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  E QV+I +M HD    P  ++ 
Sbjct: 74  RFPGGFFKREARPSDQEILTMRLVDRVLRPLFPKEYYCEVQVMIQLMSHDENVMPDALAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
           +AASA L +S +PF+GP+   +V  ING++++NP   +  +  +D+ V  +++ V MVE 
Sbjct: 134 LAASACLAVSDIPFDGPISEVRVGRINGEFIINPSAQQLAESDMDIMVGASKEFVAMVEG 193

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIK 249
           E +++SE  + DAI F H   K  IEA  +L +   K     +  ++  ++ +++     
Sbjct: 194 EMDEVSEKDMADAIHFAHEAIKVQIEAQERLREKVGKTIRTYEVPQENEEVAKKIYDFCY 253

Query: 250 EDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           +     +     K+ R  + D +K+   + F+ E     +  +   F   Q + VR ++L
Sbjct: 254 DKCYAIAKENTTKHERSDKFDAVKEACKALFTEEELEEYDKLVSKYFSKAQKEAVRNLIL 313

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++ +R+DGR+++ +R I  +VG L   HGS++F RG+TQ++  VTLGT  +   +D  S 
Sbjct: 314 NEDLRLDGRNTKQIRPIWCEVGYLPSPHGSAIFTRGETQSLTTVTLGTSREANVIDIPSE 373

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P     PYT+R+VSE
Sbjct: 374 QGEERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKRMIP--EDCPYTVRVVSE 431

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           I ES+GSSSMATVC  +LALMDAG+ + KPV+GIAMGL+ DGD + +LSDI GDEDHLG 
Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAVLSDILGDEDHLGD 491

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKV GT  GITA QMD+KI G++  I+  AL+QA+ GR+HIL +++  ++     +  
Sbjct: 492 MDFKVTGTKDGITACQMDIKIKGLTYEILEKALEQAREGRMHILGKITDTIAVPNPTVKP 551

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEA 605
             P++  + +P + I   IG GGK I+ +  +T   + +++    G V+I  +    I+ 
Sbjct: 552 HAPKIVRLEMPKEYIGAFIGTGGKNIQDLQARTKTTIVVEEVGELGVVEILGTDADGIQE 611

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A + +  ++  P   ++YK +V ++++FGAFV F   +D L+H+S+++ ERV K SDV+K
Sbjct: 612 AVDAVYHVSFEPVEGEVYKVRVARLVEFGAFVEFVPGKDSLLHVSEIAWERVEKPSDVLK 671

Query: 666 EGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           EGD + VK L  D +  K ++S K +    
Sbjct: 672 EGDIIEVKYLGIDPKTKKTRVSRKALLPRP 701


>gi|187610335|sp|Q9RSR1|PNP_DEIRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 779

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/695 (43%), Positives = 437/695 (62%), Gaps = 10/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T      GR L +ETG++A+   G+V   YG+T++L T       +   DF PLTV ++
Sbjct: 4   KTFTTMLGGRELSIETGKLAKLVSGSVTVRYGDTLLLVTAQAS-DTQSKLDFLPLTVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D ++
Sbjct: 63  ERHYAVGKIPGSFQRREGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVLSADGQN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           +P V+  + A+AAL +S +P+ GP    +V  I+GQYV+NP  ++  +  +DL V+GT++
Sbjct: 123 APDVLGPIGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSRMDLVVAGTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD---FSKL 240
           AV+MVE  A  +SED ++ AI F H E + VI  I ++      E     +++      +
Sbjct: 183 AVMMVECGAQTVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHEKFNFLAEEGPANDYV 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI----VSVFE 296
            E   +     LR +     K  R  ++  L+  ++  +  + ++    E+       F 
Sbjct: 243 PELTEKAKAAGLRDALLTHGKKDRSARLKALRNGLIEGYVPDPTAEGSAELTQALKDAFG 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ + +R ++L++ +R DGRDS+TVR I  +   L   HGS++F RG+TQ + V TLGT
Sbjct: 303 KVEKRELRRLILEENLRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DE  +D L+    + F++HYNF P +TGEV RMG  SRREIGHG LA+RAI  VLP  
Sbjct: 363 ERDEILIDDLTAESGDKFLLHYNFPPYSTGEVKRMGGQSRREIGHGNLAKRAIRAVLPSF 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V ++ ES+GSSSM TVC  +L+LMDAGVP+  PVAG+AMGLV +GD++ +L
Sbjct: 423 EEFPYVIRVVGDVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGDNYRVL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+K+GGI+  IM  AL QAK GRLHIL +M+
Sbjct: 483 TDILGLEDALGDMDFKVCGTAEGVTALQMDIKVGGITPQIMREALAQAKEGRLHILGKMA 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VL+  R +L    P +  + I P+ I  VIG GGK +R + E  GA+V I++DGTV+I 
Sbjct: 543 EVLAAPRAELSPTAPHILSLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTVRIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+S    EA +  I ++T   +V + ++G VVK+  FGAFV+    +DG++HISQLS +R
Sbjct: 602 SASGESAEAVKARIEAVTKEAKVGEEFEGTVVKIAPFGAFVNLFPGQDGMLHISQLSEQR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V    DV+  GD + VK+ + DDRGKI L    ++
Sbjct: 662 VENVEDVLTVGDKLKVKIANIDDRGKIDLIRPELE 696


>gi|313895740|ref|ZP_07829296.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975866|gb|EFR41325.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 635

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/634 (45%), Positives = 421/634 (66%), Gaps = 3/634 (0%)

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           +TV+Y+E+ YA GKIPGG+++RE RP+ + +L +R+IDR IRPLF + ++N+ Q++  V+
Sbjct: 1   MTVDYEEKMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVL 60

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
             D ++ P + +M+ AS AL +S +PF GP+ G +V Y+NG +V+NP+ +E     L+L 
Sbjct: 61  SVDQDNPPEIAAMLGASCALTVSDIPFMGPIAGVRVGYVNGAFVINPKEEERAVSELNLT 120

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           V+G+ DAV+MVE  AN+LSE++VLDAI+FGH E + ++E    +   C KE  +      
Sbjct: 121 VAGSYDAVMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSACGKEKQIPAIFAV 180

Query: 238 SK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           S+ LEE++    +E L  +    +K  R   I  +K + + +F  E+      EI  +  
Sbjct: 181 SEELEEKIRVYAEERLDAATRNEDKLGRDADIAAIKSETMEHFIVEYPEQ-AKEISQILY 239

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I+  +VR ++  +K+R DGR    VR +S +VG+L RTHGS LF RG TQ + V TLG+
Sbjct: 240 KIEKSIVRHMITHEKIRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGS 299

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +D L       ++ HYNF   + GE   M +P RREIGHG LA RA+ P++P  
Sbjct: 300 IGDEQIIDGLGPETTKHYLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSI 359

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPYT+R+VSEI ES+GSSSM +VCGS+L+LM AGVPI +PV+G+AMGLV+DGDD+ IL
Sbjct: 360 EDFPYTIRLVSEILESNGSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYSIL 419

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI GI+ +I+  AL QAK GR  IL++M 
Sbjct: 420 TDIQGMEDALGDMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILDKML 479

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + +   +L  + PRVE + I  D+IR+VIG GGKV+R I+++TG  ++I +DG + I 
Sbjct: 480 ECIDKPAEELSPYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVDIDIHEDGNIFIT 539

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S +   ++ AR+MI  I    EV +IY G+V + + FGAFV     ++GL HISQL+  R
Sbjct: 540 SPNTEAMDRARKMIEDIVRDVEVGEIYTGRVTRFLKFGAFVELLPGKEGLCHISQLAKHR 599

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V    +VV  GD + VK+++ D++G+I +S KV+
Sbjct: 600 VESVENVVHIGDELQVKVIEIDEKGRINVSHKVL 633


>gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CB0101]
          Length = 715

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/705 (41%), Positives = 421/705 (59%), Gaps = 18/705 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT  I + GR ++L TGR A Q+ G+V+   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   HTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRS-GGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRESRP E   LI+R+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+++  AS A +L+ +PF GP+   +V  +   +VLNP   E ++  LDL V+GT +
Sbjct: 123 PPDVLAVTGASLATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A   L K         EP   D     
Sbjct: 183 GVIMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQQALLKELGIEQVIPEPQTTDDTLPK 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW--------NEGE 290
            LE+E ++ I + L+   F   K  R +Q+D +K ++                   N   
Sbjct: 243 FLEKECAKGIGDVLKQ--FKLTKAERDEQLDAIKGQVAEKIDGLKDDDAIKVAVSSNGKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + ++ +  K++R  ++    R+DGR+ + VR ISA  G+L  R HGS LF RG TQ +
Sbjct: 301 LGNSYKSLTKKLMRDQIVKDGKRVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P +TGE   M +P RREIGHG LA RA+
Sbjct: 361 SCATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSTGETKPMRSPGRREIGHGALAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE   S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPSKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+    +  A+ QA+  RL
Sbjct: 481 GKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLEVKTVAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIEKPREVLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      +++ G V +V+  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFSGAVTRVIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           SQLS  RV K  DVV+ GD V V++ + D+RG+I L+++ V Q+ 
Sbjct: 661 SQLSEARVEKVEDVVRVGDQVTVRVREIDNRGRINLTLRGVPQSE 705


>gi|331084721|ref|ZP_08333809.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330410815|gb|EGG90237.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 721

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/699 (41%), Positives = 422/699 (60%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+
Sbjct: 27  MF--KKFEMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLS 84

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  
Sbjct: 85  VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSV 144

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +     L L V+
Sbjct: 145 DPDCSPELTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVA 204

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T+D V+M+E  AN++ E  +++AI   H   + VI+ I  +   C KE     S     
Sbjct: 205 STRDKVIMIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTSCAVPE 264

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L E + +++  E++  + F  EK VR + I  +++K+   F +E+  W E  +      
Sbjct: 265 ELFEAIKEIVTPEEMEEAVFTDEKQVREENIRVIREKLEEAF-AENEEWLE-LLGEALYQ 322

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR  + +R ++A+  L+ R HGS++F RG TQ   + TL   
Sbjct: 323 YQKKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTITTLAPL 382

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 383 SEAQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSE 442

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
           A+FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+I
Sbjct: 443 AEFPYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYI 502

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E
Sbjct: 503 VLTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDE 562

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R  +G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V
Sbjct: 563 VMSKAIAEPRASVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDDGAV 622

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +       +E A +MI  I    E  ++ +G+VV + +FGAFV F   ++G+VHIS++S
Sbjct: 623 SVCGVDAEAMEEAMKMIAIIVTDFEAGQVLEGKVVSIKEFGAFVEFAPGKEGMVHISKIS 682

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ER+    DV+  GD V V  L  D  G++  S+K V +
Sbjct: 683 KERIKNVEDVLTLGDKVKVVCLGKDKMGRMSFSIKDVAE 721


>gi|209525615|ref|ZP_03274153.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
           CS-328]
 gi|209493948|gb|EDZ94265.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
           CS-328]
          Length = 720

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/697 (42%), Positives = 428/697 (61%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ GA+L   G+T VL T       + G DF PL V+Y+ER
Sbjct: 6   KSISFDGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRA-EGRPGIDFLPLLVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP +   L SR+IDR +RPL     +++ Q++   +  D +  P
Sbjct: 65  LYAGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++L+ +PF GP+   +V  +   +++NP   E   G LDL V+G+   V
Sbjct: 125 DVLAVTGASVAVLLARIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGDLDLVVAGSPQGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-----DSKDFSKL 240
           +MVE  AN+L E  V++AI FG+     +I+A +++ +    E  +      D      +
Sbjct: 185 VMVEAGANELPEHDVIEAIDFGYEAVMDLIKAQTEIMQELGIENPIEEPPPEDPTLIEFI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK----MVSYFSSEHS-----SWNEGEI 291
           +E +++ +K+ L    F   K  R   +D +K++     ++    +       + N   +
Sbjct: 245 QERVTEPVKKVLGQ--FELTKDERDAALDVIKEEQIVSAIALMPEDDPISLFNTENPKAV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIV 350
             +F+DI  K++R  +L + VR+DGR+ + VR +S +VGLL  R HGS LF RG TQ + 
Sbjct: 303 GMIFKDITKKLMRQQILSEGVRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLS 362

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + TLGT  D Q +D L       +M HYNF P + GE   M +P RREIGHG LA RA+ 
Sbjct: 363 IATLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETRPMRSPGRREIGHGALAERALL 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   QFPY +RIVSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+G
Sbjct: 423 PVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPIVKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++  A+ +AK  RLH
Sbjct: 483 SEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVADAIAKAKPARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M +VL + R  L  F PR+  + I PD I  VIG GGK I+GI E+TG K++IDDD
Sbjct: 543 ILEKMLEVLPKHRPDLSPFAPRLLTLKIDPDLIGLVIGPGGKTIKGITEETGVKIDIDDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV IAS+       A ++++ +T       +Y G+V +++  GAFV     ++G++HIS
Sbjct: 603 GTVTIASTDSENAARAYQIVQGMTRKLNAGDVYVGKVTRIIPIGAFVEVLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V VK+ + D +G+I L+ 
Sbjct: 663 QLAEYRVPKVEDEVAVGDEVIVKVREIDPKGRINLTR 699


>gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
 gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
          Length = 750

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/705 (44%), Positives = 451/705 (63%), Gaps = 11/705 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+   V     G+ +  ETGR+A Q+ GAV    G TVVL TV   + L+  + FFPLT
Sbjct: 5   IFNPTRVTATVGGKEIIFETGRLANQAHGAVWVQCGGTVVLVTVC-SQPLEFDKGFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR IRPLF K    + QV+ +V+ 
Sbjct: 64  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVIS 123

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D E+   V+++  ASAA+MLS LPFEGPV G ++  I+GQ+VLNP  +E +   L++  
Sbjct: 124 ADQENESDVLALTGASAAVMLSPLPFEGPVAGGRIGRIDGQFVLNPTFEEQERSDLNIVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDF 237
           + ++DA+ MVE EA  + EDV++DA+ +G  E +P+I+A  KL ++  KE +     +D 
Sbjct: 184 AASRDALTMVEGEATFVPEDVIIDALEWGRKEIQPLIDAQLKLRELAGKEKMPFTPHQDD 243

Query: 238 SKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVS 293
             L   + ++ +E  +  +  +PEK  R      +K K++    ++     S    E+  
Sbjct: 244 PVLVARVQELAREAGIEEALRVPEKLARKDARKAVKDKVMEALLNDPAWAESEALKEVGE 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  D++ K++R  ++++ VR+DGRD++TVR I  Q  +L R HGS++F RG+T+++VV T
Sbjct: 304 IIGDLEKKIMRARIVNEGVRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSLVVTT 363

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  DEQ + SLSG     FM+HYNF P + GEV  +   SRREIGHG LA +++ PV+
Sbjct: 364 LGSSTDEQRMGSLSGDVTKRFMLHYNFPPFSVGEVKPV-RVSRREIGHGALAEKSLRPVM 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P  A FP+T+R+VSE  ES+GSSSMA VCG  L+LMDAG+PIS PVAG+AMGL+K+GD F
Sbjct: 423 PADADFPFTVRVVSETVESNGSSSMAAVCGGCLSLMDAGIPISAPVAGVAMGLIKEGDKF 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I+L+DI GDED LG MDFK+AGT  G+T +QMD+KI G++ +IM  A+QQA  GRLHIL 
Sbjct: 483 IVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTDIMRQAMQQAHEGRLHILA 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+K L E R +L  + P+   + + PD IR +IG GGK I+ I   TGA V+I+D G V
Sbjct: 543 EMAKALPEPRKELSRYAPQHAEIFVNPDIIRLIIGPGGKNIKAITTATGASVDIEDSGRV 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   +E AREM+      PE+ K Y  +V K+M+ GA V      + LVH+SQL 
Sbjct: 603 SIFAPTADALEKAREMVTYYDQRPELGKNYTAKVKKIMEIGAIVEVLPNVEALVHVSQLD 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGKP 697
             RV +  DV + G+ + VK+++ +   +I+ S K V  +  G P
Sbjct: 663 VNRVEQPGDVARLGEDMVVKVIEINGD-RIRASRKAVLLEEQGHP 706


>gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea
           DSM 7271]
 gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           DSM 7271]
          Length = 735

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/707 (39%), Positives = 436/707 (61%), Gaps = 12/707 (1%)

Query: 1   MFDVHTVEI-EWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      EI E   GR + +ETG++A+Q+DGAV+   G  ++LATVV  + +    DF P
Sbjct: 1   MIPEVKKEIIELGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++
Sbjct: 61  LTVDYREKFAAAGRFPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLI 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
            HD    P  ++ +AASA L +S +PF+GP+   +V  +NGQ+++NP  ++ +   +D+ 
Sbjct: 121 SHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASDIDIM 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSK- 235
           V  ++D V MVE E +++SE  + +AI F H   KP IEA  +LA+   K E    + + 
Sbjct: 181 VGASKDFVAMVEGEMDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEV 240

Query: 236 DFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           +  +++ ++  +  E     +     K  R ++ + +K++ ++ F+ E        I   
Sbjct: 241 ENEEVKAKVYPLAYEKCYAIAKENTTKQERGEKFNAVKEECLALFTEEELEELTPIITRY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F++ + + VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTL
Sbjct: 301 FDEAEKEAVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  +   +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P
Sbjct: 361 GTSREANVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
                PYT+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DG+ + 
Sbjct: 421 --EDCPYTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-- 592
           ++  +++    +    P++  M +P + I   IG GGK I+ +  +T   + +++ G   
Sbjct: 539 ITDTIAKPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELG 598

Query: 593 -VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            ++I  +  A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS+
Sbjct: 599 IIEILGTDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           +S +RV K  D +KEGD + VK L  D +  K ++S K +     + 
Sbjct: 659 VSWDRVDKIEDALKEGDIIEVKYLGIDPKTKKTRVSRKALLPRPPRE 705


>gi|227486455|ref|ZP_03916771.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235636|gb|EEI85651.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 718

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/687 (42%), Positives = 429/687 (62%), Gaps = 3/687 (0%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G   ++  G+ A Q++GA L   G+T +L T V     ++G DFFPL  ++QE+ YAVG
Sbjct: 11  NGYDFEVTIGKYAEQANGACLIQSGDTTLLVTAVASEKPREGIDFFPLICDFQEKLYAVG 70

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+LRRE + ++   LI+R +DR +RPLF + Y N+ Q+I  V+  D +  P  ++ 
Sbjct: 71  KIPGGFLRREGKASDEATLIARQMDRPLRPLFPEDYYNDVQIIATVLSMDHDHLPDPLTT 130

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           + AS AL +S +PF GPV    V  ++G+ V+NP  ++ + S L+L V+G + A+ MVE 
Sbjct: 131 IGASIALGISDIPFNGPVGACMVGKVDGKLVVNPNEEDRKKSQLELTVAGRKGAINMVEA 190

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
            AN+L E  +L+A++   +E   + + I  +          ++  + ++L+  +S+  +E
Sbjct: 191 GANELDESEMLEAMLLALDEIGDISDFIQTIIDDIGLPKKEVEVHEETELDRLISEAFEE 250

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           D++ S    +K  R   I  ++++    F   +   +E EI    ++I  K VR ++   
Sbjct: 251 DIKSSIRTTDKTEREDNIFRIEEEAKEKFLEAYPE-SEDEIHRRIDNIMKKEVRRMISID 309

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K+R DGR+   +R +SA+ G+L R HGS LF RG TQ + +VTLG+  D Q +D L+   
Sbjct: 310 KIRPDGRELTEIRPLSAEAGVLPRVHGSGLFQRGQTQVLSIVTLGSPADSQLIDGLNIED 369

Query: 371 -RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
               +M  YNF P   G+V  +  P RREIGHG LA RA+ PVLP    FPYT+R+VSE+
Sbjct: 370 VEKRYMHQYNFPPFCVGDVRPLRGPGRREIGHGHLAERALVPVLPDEKDFPYTMRVVSEV 429

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             S+GSSS A++CGS+L+LMDAGVPI KPVAGIAMGL+K+ D   IL+DI G EDHLG M
Sbjct: 430 LSSNGSSSQASICGSTLSLMDAGVPIKKPVAGIAMGLIKEDDSISILTDIQGLEDHLGDM 489

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  GITA+QMDMKI GI+E ++  +L  AK  R  IL+ +   +   R +L E+
Sbjct: 490 DFKVAGTRDGITALQMDMKISGITEEVLRQSLADAKDARFRILDVIEAAIDAPRAELSEY 549

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            PR+  + I P+++R+VIG GGK I  I++ TG K+  +DDG + +AS+  A  + A EM
Sbjct: 550 APRLYTIDIDPEKVRDVIGSGGKNINKIIDATGVKIETEDDGHITVASNDGASGKKAIEM 609

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I++I   P+   IY+G VV++M+FGAFV     ++GL+HISQ++  RVAK  D +K GD 
Sbjct: 610 IKAIVTDPKPGDIYEGTVVRLMNFGAFVEIAIGKEGLLHISQIANHRVAKVEDELKVGDK 669

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           V VK+ + D +G+I LS K + +   K
Sbjct: 670 VTVKVTEIDRQGRINLSRKALLEKPEK 696


>gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
 gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
          Length = 752

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/702 (40%), Positives = 428/702 (60%), Gaps = 10/702 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            + +    E+ GR L +E G IA+Q+ G+V+  Y +T VL+T   +   KD  DFFPLTV
Sbjct: 13  MEKYKKSWEFHGRTLTVENGEIAKQAGGSVVIRYADTTVLSTATANNQAKDT-DFFPLTV 71

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            YQE+ YA GKIPGG+ RRE RPTE+  L +R+IDR IRPLF++ ++NE Q++  V+  D
Sbjct: 72  LYQEKMYAAGKIPGGFTRREGRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCD 131

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            ++S  + S+  +S AL +S +PF GPV G  V  ++G+Y++NP +++++   L++ V+G
Sbjct: 132 PDASSEMASLFGSSLALCISDIPFNGPVAGVMVARVDGEYIINPSVEQEKNSDLNVTVAG 191

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T++A+ MVE  A ++SE+ +L A++ GH+  K +     ++   CAKE + +   + + +
Sbjct: 192 TKNAINMVEAGAKEVSEEDMLKALMIGHDAIKELCAIQEEVIAACAKEKMEVSLYEINPI 251

Query: 241 EEE-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHSSWNEGEIVSVFE 296
            ++ + +   + +R +  I  K  R  +ID+L  +M   V+    E     E  +    E
Sbjct: 252 VKQLVDEKGAQRIREAVSIKGKLERYGKIDELIAEMEEEVAKLEWEDDKAREKAVKQAHE 311

Query: 297 ---DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
              +++A  VR ++ ++K+R DGR  + +R + +QV LL R HGS++F RG+TQ + V T
Sbjct: 312 YGVEVEAGEVRRLISEEKIRPDGRGLDELRPLDSQVDLLPRVHGSAMFTRGETQVLSVTT 371

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   D Q +D L+      FM  YNF P + GEV RM +P RREIGHG L  RA+  VL
Sbjct: 372 LGPLSDAQLIDDLTTETEKRFMHQYNFPPFSVGEVGRMSSPGRREIGHGALGERALLQVL 431

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R  +E+ ES+GSSS A++C  +++LM AGVPI   VAG+AMGL+  GD +
Sbjct: 432 PTAEEFPYAIRTCAEVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTY 491

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDH G MDFKVAGT +GITA+QMD+K+ GISE I+  AL QA +GR+ IL+
Sbjct: 492 SILTDIQGMEDHYGDMDFKVAGTRNGITALQMDIKVTGISEEILREALAQAHKGRMEILD 551

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGT 592
            M   +S  R  + E+ P++  M IP ++IR VIG GG+ I  I+    G K++I DDG 
Sbjct: 552 NMETAISTPRDHVSEWAPKMAQMMIPVEKIRVVIGKGGEQIDKIIAACDGIKIDITDDGK 611

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                +    I+ A +++  +    +V  IY   V++V +  AFV      D L+H+S+L
Sbjct: 612 CVFYHTKQDMIDKAMQIVGDLIREAKVGDIYDATVLEVRESFAFVMLFPGTDALLHVSEL 671

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +  RV K  D +  GD + VK+   D  GK+K+S K   +  
Sbjct: 672 AWNRVEKIQDALHVGDVIKVKVTGVDATGKVKVSAKECLEKP 713


>gi|238916832|ref|YP_002930349.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238872192|gb|ACR71902.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 723

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/696 (39%), Positives = 418/696 (60%), Gaps = 11/696 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E+E AGR L+++ GR+  Q++GA L  YG+TVVL+T    +  ++G DFFPL+
Sbjct: 30  MF--KQYEMELAGRTLRVDIGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLS 87

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YA GKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 88  VEYEEKMYAAGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSV 147

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P +++M+ ++ A  +S +PF+GP    Q+  I+G++++NP   +   G L L V+
Sbjct: 148 DENCRPELLAMIGSAIATSISDIPFDGPCATTQIGMIDGEFIVNPSQAQWQDGDLQLTVA 207

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T+  V+M+E  AN++ ED +++AI   H+  + +I  I K+     KE     S    +
Sbjct: 208 STKQKVIMIEAGANEIPEDKMIEAIYKAHDINQTIIAFIDKIVAEVGKEKHSYVSCAVPA 267

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           ++ E M Q++  E++ V+ F  +K  R K ID + +KM   F+   +      +      
Sbjct: 268 EMFEAMKQVVSPEEMEVAVFTDDKQTREKNIDAVTEKMKEAFA--DNEEWLAVLGEAVYQ 325

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   VVTL   
Sbjct: 326 YQKKTVRKMILKDHKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDVVTLAPL 385

Query: 358 EDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q VD L        ++ HYNF   + GE      P RREIGHG LA +A+ PVLP  
Sbjct: 386 SEAQKVDGLDENVTTKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAEKALVPVLPSE 445

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI + VAGI+ GLV     DD+I
Sbjct: 446 EEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGETDDDYI 505

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++ +  RL I++ 
Sbjct: 506 VLTDIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIRRTREARLFIMDT 565

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M   ++E R  +GE+ P++   +I P +I  V+G  GK I  I+++ G K++I DDG V
Sbjct: 566 CMKPAIAEPRKTVGEYAPKIIQTSIDPAKIGEVVGQRGKTINAIIDECGVKIDITDDGFV 625

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +     A ++ A + I++I +  E  KIY+G+VV + +FGAFV F   ++G+VHIS++S
Sbjct: 626 SVCGVEQAGMDKAMKYIKTIVEDFEEGKIYEGKVVSIKEFGAFVEFAPGKEGMVHISKIS 685

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            ER+    DV+  GD V  K +  D  G+I  S+K 
Sbjct: 686 NERINHVEDVLTLGDHVKCKCMGKDKMGRISFSIKD 721


>gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
 gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
          Length = 698

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/696 (43%), Positives = 439/696 (63%), Gaps = 11/696 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTV 61
           +  T ++    + L LETG +A+Q+DG+V+A  G+T+VLAT V D+  K G  DF PLTV
Sbjct: 5   NKTTQDVIVGDKTLSLETGWVAKQADGSVIARMGDTMVLATAVSDKVQKPGISDFVPLTV 64

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NY+ERTYA GKIPGG+ +RESR ++ E L SR+IDRS+RPLF   Y  ET V   V+  D
Sbjct: 65  NYKERTYAAGKIPGGFFKRESRASKKETLASRIIDRSLRPLFPSGYTCETNVTAMVLSAD 124

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSG 180
                 V++++A+S AL++S +PF  PV   ++  +NG +++NP L+E +   +DL +SG
Sbjct: 125 GVYDTEVLAVMASSTALIISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCDMDLIISG 184

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           + + +LMVE  A ++SE+ V+ A+         + +A  +L +   KE     ++   + 
Sbjct: 185 SLEGMLMVEGGAKEVSEEDVIKALETAKPAIDILCKAQLELKEKAGKEKFSFQAETVPQ- 243

Query: 241 EEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             ++  +     R           +K  R  +I +LK          H            
Sbjct: 244 --DVVDLGNNKYRAEVANILNAFYDKQTRDVKIAELKAAFAEEIKEAHGDNASTFAGITM 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E++  +  R ++L+K VR+DGR ++ +R +++  GLL R HGS+LF RG TQ +VV TLG
Sbjct: 302 ENLSYEESRKLVLEKGVRVDGRKTDEIRQLNSITGLLPRAHGSALFTRGQTQGLVVTTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q V+SL  +    FM+HYNF   +TGE     AP RREIGHG LARRA+ P++P 
Sbjct: 362 TSGDAQLVESLEESYDETFMLHYNFPGFSTGECKPDRAPGRREIGHGELARRALLPLIPD 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VS+I ES+GSSSMA+VCG SL+L DAGVP+    +GIAMGL+K+GD + +
Sbjct: 422 ADKFPYTIRVVSDIMESNGSSSMASVCGGSLSLFDAGVPMKAACSGIAMGLIKEGDKYAV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK-IGGISENIMVMALQQAKRGRLHILNE 534
           LSDI G EDHLG MDFK+ G+ +GITA QMD+K  GGIS  I+  A+ QA +GR+HI++ 
Sbjct: 482 LSDIMGLEDHLGDMDFKLTGSRNGITAFQMDVKLAGGISIEILKEAVAQATKGRMHIMDH 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M  VL E R  + +F P +  M IP D+I  +IG GGK I+ I E T  K++I+DDG V+
Sbjct: 542 MDSVLPEPRKDVSKFAPVIYTMRIPQDKIGALIGPGGKNIKRITETTDTKIDINDDGVVQ 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA+ +  ++  A+  I  +T   E+NKIYKG+VV +  FGAFV     +DGL+HIS++  
Sbjct: 602 IAAVNGDKLAMAKAEIELLTAEVELNKIYKGKVVSIQPFGAFVELIPGKDGLLHISEIDK 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +R+ K  DV+K GD V VK+++ D+ GK++LS KV+
Sbjct: 662 KRINKVEDVLKMGDIVEVKVVEIDNNGKVRLSRKVL 697


>gi|325661686|ref|ZP_08150309.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471939|gb|EGC75154.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 721

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/699 (41%), Positives = 422/699 (60%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+
Sbjct: 27  MF--KKFEMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLS 84

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  
Sbjct: 85  VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSV 144

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +     L L V+
Sbjct: 145 DPDCSPELTAMLGSAIATAISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSDLQLTVA 204

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T+D V+M+E  AN++ E  +++AI   H   + VI+ I  +   C KE     S     
Sbjct: 205 STRDKVIMIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTSCAVPE 264

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L E + +++  E++  + F  EK VR + I  +++K+   F +E+  W E  +      
Sbjct: 265 ELFEAIKEIVTPEEMEEAVFTDEKQVREENIRVIREKLEEAF-AENEEWLE-LLGEALYQ 322

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR  + +R ++A+  L+ R HGS++F RG TQ   + TL   
Sbjct: 323 YQKKTVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTITTLAPL 382

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 383 SEAQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSE 442

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
           A+FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+I
Sbjct: 443 AEFPYAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYI 502

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E
Sbjct: 503 VLTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIACTKKARTYILDE 562

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R  +G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V
Sbjct: 563 VMSKAIAEPRASVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDDGAV 622

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +       +E A +MI  I    E  ++ +G+VV + +FGAFV F   ++G+VHIS++S
Sbjct: 623 SVCGVDAEAMEEAMKMIAIIVTDFEAGQVLEGKVVSIKEFGAFVEFAPGKEGMVHISKIS 682

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ER+    DV+  GD V V  L  D  G++  S+K V +
Sbjct: 683 KERIKNVEDVLTLGDKVKVVCLGKDKMGRMSFSIKDVAE 721


>gi|331269622|ref|YP_004396114.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           BKT015925]
 gi|329126172|gb|AEB76117.1| Polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           BKT015925]
          Length = 706

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/696 (41%), Positives = 439/696 (63%), Gaps = 5/696 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H  E   AGR LK E G++   SD A+  +YG+TVVL  V    + K+G DFFPL++ YQ
Sbjct: 3   HVFETIVAGRKLKGEFGKLGMLSDCALNISYGDTVVLINVNASPAPKEGIDFFPLSIEYQ 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+++RE RP++  IL +R IDR +RPLF K Y+N+ QV+  V+  D ++
Sbjct: 63  ERLYAVGKIPGGFIKREGRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P++++M  AS AL LS +PF  PV    V  I+G+++ NP   + ++  LDL V  T++
Sbjct: 123 LPNILAMNGASLALCLSSIPFTKPVGTVSVGLIDGKFIANPTSKQREESILDLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEE 242
            V+M+E    ++ EDV+ DAI+FG  ECK + +   K+ +   K+   +   +  S +E+
Sbjct: 183 RVMMIEAGGEEIPEDVMYDAIMFGFEECKKIADFQEKVMEQYGKQKAELILHEINSDIEK 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E+     + ++ + +I +K +R K +D++K+K+   FS  +   +  +I      +Q +V
Sbjct: 243 EVKDFAFDMIKEAMYITDKDLRNKAVDEVKEKVNQEFSERYPD-DLADIGEAIYKMQKQV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+++L++K R DGR+ + +R +SA+  LL RTHGS LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRSMILNEKRRPDGRNFDEIRPLSAETSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQV 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +       +M HYNF   + GEV  +  P+RREIGHG LA +AI P++P   +FPY 
Sbjct: 362 LDGIDEETSKRYMHHYNFPSYSVGEVRPLRGPNRREIGHGALAEKAIEPLIPSEQEFPYA 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGLV   D     IL+DI 
Sbjct: 422 IRVVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSKEEILTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GITA+Q+D KI G+S + +  A+  A+  RL IL  ++  + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITAIQVDTKIEGLSNDCIKKAISDARTARLTILKVINDCID 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R ++ ++ P+V  M I P +I++VIG GGK I  I+++TG K++I +DG V + +   
Sbjct: 542 KPREEVSKYAPKVFTMTINPSKIKDVIGAGGKTINKIIDETGVKIDIKEDGAVFVTAEDY 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A EMI   +   +  +IY G+V K+ +FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 ESGRKALEMIEGYSKEVKEGEIYLGKVTKISNFGAFVSILPGKEGLVHISKLDVKRVNKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            DVV  GD + VK+ + D  G+I LS K   +++ +
Sbjct: 662 EDVVSVGDEILVKVTEIDSMGRINLSRKDAIKDSEQ 697


>gi|187934276|ref|YP_001885477.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B
           str. Eklund 17B]
 gi|226702638|sp|B2TJ61|PNP_CLOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187722429|gb|ACD23650.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 704

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/702 (41%), Positives = 444/702 (63%), Gaps = 9/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V  +    AG+ +K+E G+I   S+ A   +YG+TV+L  V      + G DFFPL+
Sbjct: 1   MNNV--LSTNIAGKEMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+ER YAVGKIPGG+++RE RP+E  IL  R +DR++RPLF K Y+N+ QV+  V+  
Sbjct: 59  VEYEERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + ++ P ++++ AAS AL LS +PF  PV   QV  I+  +++NP   E ++ +L L V 
Sbjct: 119 EKDNLPEILAINAASMALCLSSIPFTIPVAAVQVGLIDNNFIVNPNATEREESTLHLTVC 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
            T++ V+M+E   N++ ED+++DAI FG +EC+ +I    +      KE  V        
Sbjct: 179 ATKERVMMIEAGGNEIPEDIMIDAIKFGFDECQKIINFQEEAVSKFGKEKDVPTLFTVDE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+++ +   + ++ + +I +K  R   ID + +K+   F  ++     G+I  V  ++
Sbjct: 239 EVEKDIKEFASDMIKEAMYITDKDERNAAIDAVNQKVKEEFGEKYEDKF-GDIKEVLYNM 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q KVVR ++L  K R DGR  + VR +  ++GLL RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKKVVRHMLLKDKRRPDGRAFDEVRPLGCEIGLLPRTHGTGLFTRGLTQVMTVATLGAVG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +   Q   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 DIQILDGIDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+   D  +  +L
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLSEEQVL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ R+ IL++++
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLKGFSFNVVENAIRDARKARMTILDKIN 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +S  R  +  + P+ E + I PD+IR+VIG GGKVI  I++ TG K++I +DG+V ++
Sbjct: 538 ECISSPREDVSLYAPKTETIQIDPDKIRSVIGAGGKVINKIIQDTGVKIDIKEDGSVFVS 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS  A ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  ER
Sbjct: 598 SSDHAGVKEAIKIIEGLTKDVKAGEIYLGKVTKITTFGAFVEILPNKEGLVHISKLDKER 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGK 696
           V K  DVV  GD + VK+ + D +G+I LS K V  DQ   +
Sbjct: 658 VNKVEDVVSVGDEILVKVTEIDSQGRINLSRKDVLLDQENKE 699


>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
 gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
          Length = 693

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/695 (41%), Positives = 442/695 (63%), Gaps = 7/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M  V + + E+AG+ LK++ G++A Q+ GA L  YGET VL TVV     K+  DFFPLT
Sbjct: 1   MRQVCSFKREFAGKELKIDIGKVAWQATGAALVQYGETTVLVTVVASEDKKEDVDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y ER YA GKIPGG+ +RE +PTE EIL +R+IDR +RPLF+K ++NE QVI+ V+ +
Sbjct: 61  VEYVERLYAAGKIPGGFFKREGKPTEPEILFARLIDRPLRPLFAKDFRNEVQVIVTVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           D E+S  + S++ AS A++L+GLPF+GP+   ++ +   ++ +NP +      L DL V+
Sbjct: 121 DHENSTDIPSIIGASCAIILAGLPFKGPIGAVRIGWDGNEWYINPPVTLSNSLLLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+DAVLM+E +  ++ ED+ L+ II  H+    VI    ++       P   D     +
Sbjct: 181 GTKDAVLMIEGDGKEVPEDIFLEGIIKAHSAMLDVINFQEEILSQINPAPFNYDPFVVDE 240

Query: 240 -LEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            L+  +   +  + +R + F P K  R K ++DLKKK++ +F   +      ++  +   
Sbjct: 241 RLKRAVLDYVTVDQIRDAIFTPSKSERQKALEDLKKKVIEHFKPIYGEIT-AQVDEIINQ 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
              K++  V+L++K R+DGR    +R +S +VG+L+R HGS+LF RG+TQ + VVTLG  
Sbjct: 300 EAKKILSQVVLEEKRRVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLSVVTLGAG 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           E EQ ++S+  ++   ++ HYNF P + GE   +  P RREIGHG LA RA+ P++P+  
Sbjct: 360 E-EQIIESVIESEPKRYIHHYNFPPFSVGEAKPLRGPKRREIGHGALAERALLPLIPKEE 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+  S+GS+SMA+VCGSSL+LMDAGVPI   VAG+AMGL+K+GD F +L+
Sbjct: 419 EFPYTIRVVSEVLSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGDRFEVLT 478

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFK+AGT +GITA+Q+D+K+ G+S  I+   L+QAK  R  IL+ M K
Sbjct: 479 DIQGLEDALGGMDFKIAGTRNGITAVQLDIKVDGLSYEIIERTLKQAKEARYQILDIMEK 538

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            + + R ++  + PR+ ++ I P +I ++IG  GK I+ I+E+T   +NI  +G V I++
Sbjct: 539 TIPQPRPEISPYAPRIMVLEINPSKIGDLIGPSGKNIKKIIEETHTTINIKPEGLVYISA 598

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 E A +M++  T   +   I+ G+V++V D+GAFV     + GL+HIS+  T   
Sbjct: 599 PDQESAEKAAQMVQDYTRDIKEGDIFLGKVIRVTDYGAFVEILPGKIGLLHISKYKTTGT 658

Query: 658 AK--TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            K  T + +  GD + +K+   D  G+I L+ K +
Sbjct: 659 GKNQTREEINLGDEILIKVDSIDSSGRISLTRKDL 693


>gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 754

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/703 (44%), Positives = 451/703 (64%), Gaps = 7/703 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           FDV ++  +  G  + +E+G+ ARQ+ GAV    G TV+L T      ++  + FFPLT 
Sbjct: 5   FDVTSLTTQVGGIDITIESGKYARQASGAVTIKSGGTVILVTSTTQP-IEVDRGFFPLTC 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           NYQE  YA G++PG Y RRE RP+E E LISR+IDR IRPLF+K + +E Q+I  V+  D
Sbjct: 64  NYQEMAYAAGRVPGNYFRREGRPSERETLISRLIDRPIRPLFAKGFADEVQIIATVLSAD 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD--EDQGSLDLFVS 179
              +P V+++  ASAA  +S +PF GP+VGA+V Y++ Q+VL P     E+  SL+L  +
Sbjct: 124 KHVNPDVLALTGASAATHISKMPFLGPIVGARVGYVDNQFVLFPSYKGMEELSSLNLIFA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
            T++A++MVE  AN +SED+V DA+ +GH + KP+ +   +L  +     + I +    +
Sbjct: 184 ATREAMVMVEGGANFVSEDLVADALAWGHEQVKPLFDIQDELRSLVGVPKMEITAPIQDA 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVSVFE 296
           +L   + + I +DLR +   PEK VR    D  K+K     + +          +  +  
Sbjct: 244 ELVSFLGEFISDDLRAAVTTPEKMVRYAAKDAAKQKAKQAVAEKFPEDAAKLKAVSDIVG 303

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+  K+VR  ++ + +R+DGRD+ TVR +S + G+L  THGS LF RG+T A+ V TLG+
Sbjct: 304 DLTKKIVRERIVKEGLRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLGS 363

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ  DSL G     FM+HYNF P   GE   +   SRRE+GHG LA RAI PVLP  
Sbjct: 364 TRDEQRYDSLLGDATKRFMLHYNFPPYCVGEARMLRGTSRREVGHGALAERAIAPVLPNQ 423

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FP+T+R+VSEI ES+GSSSMA+VCG++L+LMDAGVPIS PVAGIAMGL K+ + F +L
Sbjct: 424 DEFPFTIRVVSEIMESNGSSSMASVCGATLSLMDAGVPISAPVAGIAMGLCKENEQFFVL 483

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI GDED LG MDFKVAGT  GIT++QMD+KI GI  +++  AL QAK  R+HIL+ M+
Sbjct: 484 TDILGDEDALGDMDFKVAGTRDGITSIQMDIKISGIPSDVLRKALYQAKDARVHILDHMA 543

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VL+E R +L +  P++ I+ I P++IR+VIG GGK I+ I  +T A ++I+D G + I 
Sbjct: 544 EVLAEPRAELSDLAPQMAIVHIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGKISIF 603

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           + +LA +E A+ M+      PE  K Y G V KV++ GA V     ++G++H+SQL  ER
Sbjct: 604 APTLASMEKAKAMVLYYDQKPEPGKDYLGTVRKVLEVGALVEILPGQEGMLHVSQLDIER 663

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGKPI 698
           V +  DVV+ G  VWV  +  +  G+I+LS K  + +  G+ +
Sbjct: 664 VERVEDVVQLGQEVWVTCIALEPGGRIRLSRKAWLMKQAGQEV 706


>gi|281355549|ref|ZP_06242043.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
           ATCC BAA-548]
 gi|281318429|gb|EFB02449.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
           ATCC BAA-548]
          Length = 703

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/704 (40%), Positives = 428/704 (60%), Gaps = 15/704 (2%)

Query: 1   MFDVHTVEIEWAG-RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +   V  ++ G R +++ TG++A+ ++G+ L   G+T+VL       + ++G DFFPL
Sbjct: 1   MAEEKIV-FQFDGERTMEISTGKVAKLANGSCLVRLGDTIVLTAAC-SGAPREGTDFFPL 58

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+  A GK PGGY++RE RP+  EIL  RMIDR IRPLF   + +E Q+   ++ 
Sbjct: 59  QVDYREKYSAAGKFPGGYIKREGRPSTKEILTCRMIDRPIRPLFPDYFFDEVQISSVLLS 118

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D  + P V++MV ASA+LMLS LPF+GP+   +V  ++GQ+V+NP   + +   L+L  
Sbjct: 119 ADGVNEPDVLAMVGASASLMLSDLPFQGPIGAVRVGLVDGQFVINPTRAQMEQSKLELIY 178

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDF 237
           +G  D V+M+E EA+ +SE  + +A+   +   K   +A  +LAK   +           
Sbjct: 179 AGRPDQVIMIEGEADFVSEAQMKEAMYLANEAVKKQCDAQIELAKKAGRAKKEYKLYPVP 238

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE----GEIVS 293
             L + +     + +   C IP K  R   +D L+         + +  ++     E   
Sbjct: 239 EALMKGIEAFCADRIEAVCTIPGKEDRMVAMDALRDDARKALREQFADMSDTQFGLETAK 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+D+   V R V+L K+ R DGR +  +R +SA+VG+L   HGS+LF RG+TQA+V+ T
Sbjct: 299 GFDDLVRTVTRNVILQKQFRPDGRSTTEIRPLSAEVGVLPVVHGSALFSRGETQALVLAT 358

Query: 354 LGTREDEQYVDSLS---GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           LG  +D Q  D L+   G  +  F +HYNF   + GEV R+  P RREIGHG LA R++ 
Sbjct: 359 LGNEKDAQEADDLTSETGITKKRFYLHYNFPNFSVGEVGRITGPGRREIGHGNLAERSVS 418

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-D 469
            V+P    FPY +R VSEI  S+GS+SMA+VCG++LALMDAGVPIS PVAGI+ GLV  D
Sbjct: 419 KVVP--KDFPYVVRCVSEIMSSNGSTSMASVCGATLALMDAGVPISAPVAGISCGLVTGD 476

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             + ++L+DI G EDH G MDFKV GT  GIT  Q+D+K+ GI  +++   +++ +  R+
Sbjct: 477 NGERLLLTDIIGAEDHFGDMDFKVCGTRDGITGFQLDLKLPGIPIDLLCEGMERNRIARM 536

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL+ M   +++ R ++    PR+E++ I P++I  +IG GGK IR I E+TG  ++IDD
Sbjct: 537 KILDVMEACIAKPREEISSRAPRLEVIQINPEKIGALIGPGGKNIRAITEETGTSIDIDD 596

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG VKI +     +EAA+E I   T   E+ KIY+G+VV V DFGAFV      DGL+HI
Sbjct: 597 DGNVKIMAPDKEHLEAAKERILGSTAEAEIGKIYRGKVVTVRDFGAFVEILPGVDGLLHI 656

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           S+++  RV K +D+ +EG  V VK++D D  GKI+LS K   + 
Sbjct: 657 SEMADYRVNKVTDICEEGQFVTVKVIDIDPSGKIRLSRKAALKE 700


>gi|315223620|ref|ZP_07865474.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946401|gb|EFS98396.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 735

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/707 (39%), Positives = 436/707 (61%), Gaps = 12/707 (1%)

Query: 1   MFDVHTVEI-EWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      EI E   GR + +ETG++A+Q+DGAV+   G  ++LATVV  + +    DF P
Sbjct: 1   MIPEVKKEIIELGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++
Sbjct: 61  LTVDYREKFAAAGRFPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLI 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
            HD    P  ++ +AASA L +S +PF+GP+   +V  +NG++++NP  ++ +   +D+ 
Sbjct: 121 SHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASDIDIM 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSK- 235
           V  ++D V MVE E +++SE  + +AI F H   KP IEA  +LA+   K E    + + 
Sbjct: 181 VGASKDFVAMVEGEMDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEV 240

Query: 236 DFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           +  +++ ++  +  E     +     K  R ++ + +K++ ++ F+ E        I   
Sbjct: 241 ENEEVKAKVYPLAYEKCYAIAKENTTKQERGEKFNAVKEECLALFTEEELEELTPIITRY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F++ + + VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTL
Sbjct: 301 FDEAEKEAVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  +   +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P
Sbjct: 361 GTSREANVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
                PYT+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DG+ + 
Sbjct: 421 --EDCPYTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-- 592
           ++  +++    +    P++  M +P + I   IG GGK I+ +  +T   + +++ G   
Sbjct: 539 ITDTIAKPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELG 598

Query: 593 -VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            ++I  +  A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS+
Sbjct: 599 IIEILGTDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           +S +RV K  D +KEGD + VK L  D +  K ++S K +     + 
Sbjct: 659 VSWDRVDKIEDSLKEGDIIEVKYLGIDPKTKKTRVSRKALLPRPPRE 705


>gi|326565074|gb|EGE15267.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           46P47B1]
          Length = 665

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/666 (49%), Positives = 441/666 (66%), Gaps = 6/666 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E ++  + + LETGRIARQ++ +VL   G   VL  VV       GQ+FFPLT
Sbjct: 1   MFNPIRQEFQYGNQQVVLETGRIARQAN-SVLVHMGGVSVLVAVVVRPEAIAGQNFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ YA GKIPGGY +RE R +E E L SR+IDR IRPLF + Y NE QV   V+  
Sbjct: 60  VNYQEKMYASGKIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNEIQVTATVISS 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      + +M+ ASAAL +S  PF GP+  A+V +ING+YVLNP L E  Q  LDL V+
Sbjct: 120 DKTQDADIAAMIGASAALAISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSDLDLVVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT+ AVLMVE EA +LSED +L A+++GH + + VI+ I+  A+         +      
Sbjct: 180 GTKSAVLMVESEAKELSEDQMLGAVLYGHGQQQVVIDNINTFAQAVGNTKQEFVAPAINE 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVF 295
           +L  ++ +     +  +  I  K  R  ++D+L  + +     E     +    +I  +F
Sbjct: 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E ++ + VR  +L  K R+DGRD ETVR +  QVG+L  THGS+LF RG+TQA+VV TLG
Sbjct: 300 ETLKYRTVRDNILSGKPRIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLG 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D   VD+L+GT+++ FM+HYNF   + GE  R GAP RREIGHGRLARR +  +LP 
Sbjct: 360 TTRDVNLVDTLAGTKQDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+G+ F +
Sbjct: 420 AERFPYTIRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAV 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+ +IM  AL+QA  GR+HILN M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNGITALQMDIKIEGITADIMEQALKQAHAGRIHILNAM 539

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++V++ SR ++    P    + I P++IR+VIG GG  IR + E TGA ++IDD+GT++I
Sbjct: 540 NEVIATSRTEINAHAPNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +  A   AA   I +IT   EV  +Y+G V +++DFGAFV      DGLVHISQ+S E
Sbjct: 600 FGTDKASTRAAITQIEAITAEVEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659

Query: 656 RVAKTS 661
           RV   S
Sbjct: 660 RVENVS 665


>gi|330836568|ref|YP_004411209.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
           DSM 17374]
 gi|329748471|gb|AEC01827.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
           DSM 17374]
          Length = 705

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/695 (44%), Positives = 458/695 (65%), Gaps = 11/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFDV  V ++     L  ETG+IA+Q++G++ A+Y  + ++ATV    +  +  D+ PL+
Sbjct: 1   MFDVKKVSVKIGDGELVFETGKIAKQANGSIYASYEGSAIIATVCCGAAPSEPLDYVPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y E+ YA GKIPGG+L+RE+RP + EIL+SR+IDR +RPLF K +  E Q++  V+  
Sbjct: 61  VEYNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQIVPTVVSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D  + P ++++ AASAA+M+S +PF GP+   ++  ++G Y++NP   +  Q  LD+ VS
Sbjct: 121 DQANQPDIIAINAASAAVMISDIPFAGPIGAVRIALVDGDYIINPTFQQTAQAQLDIVVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237
           GT+D + MVE  A ++SE+V+L AI         + +A  +L K+  KE + I    +D 
Sbjct: 181 GTRDGITMVEGGAKEVSEEVMLKAIAAAQPVITALCDAQIELQKIVGKEKLPIIQINRDL 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVF 295
           S L   +       +    F+  K  R   +D +K  + + F+      S   GE+ S+F
Sbjct: 241 SWLG-PIRAAAYPLVAEKSFVKGKSNRYDALDAVKSDIKAQFAEVIGEDSKRSGEVDSLF 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           ED++ +++R  +LD  VR DGR  + +R I+ +VGLL  THGS+LF RG+TQ++ V TLG
Sbjct: 300 EDLEYEILRKSILDNGVRTDGRKVDDIRPITCEVGLLPMTHGSALFTRGETQSLAVTTLG 359

Query: 356 TREDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           T  DEQ  D++ G +  + FM+HYNF P + GE  R+ +  RREIGHG LA+RA+  ++P
Sbjct: 360 TASDEQMFDTIDGEKSFSSFMLHYNFPPYSVGETGRL-STGRREIGHGHLAQRALQAIVP 418

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-- 472
              +FPYT+R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI KPVAGIAMGL+ +G+D  
Sbjct: 419 PKEKFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGEDYA 478

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            +++LSDI G+EDHLG MDFKVAGT+ GITA QMD+KI G++  IM  AL QAKRGRLHI
Sbjct: 479 RYVVLSDILGEEDHLGDMDFKVAGTEDGITAFQMDIKIAGVTPEIMSKALDQAKRGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M K L   R ++ E+ P++  + +  D+I  +IG GGK I+ I  Q+GA++NIDDDG
Sbjct: 539 LDVMGKTLKTPRAEVSEYAPKILTIKVDEDKIGAIIGTGGKTIKSIALQSGAEINIDDDG 598

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV I   +    + A+E+++SI + PEV +IY+G V ++MDFGAF+     ++GL HIS+
Sbjct: 599 TVTIYGRNSKSAQTAKELVQSIVEEPEVGRIYQGTVKRIMDFGAFIEILPGKEGLCHISK 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+  RV    DV+  G +V VKL++ D  G++ LS
Sbjct: 659 LAKTRVNNVGDVLSLGQSVPVKLIEVDRMGRLNLS 693


>gi|210615800|ref|ZP_03290781.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
 gi|210150136|gb|EEA81145.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
          Length = 696

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/703 (39%), Positives = 426/703 (60%), Gaps = 17/703 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E+E AGR L+++ GR+A Q++GA L  YGETVVL+T       ++G DFFPL+
Sbjct: 1   MF--KKFEMELAGRTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  
Sbjct: 59  VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ ++ A  +S +PF+GP    QV  I+G++V NP   +     + L V+
Sbjct: 119 DPDCSPELTAMLGSAIATAISDIPFDGPTSTTQVGMIDGEFVFNPNAAQRAVSDMQLTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDS 234
            T+D V+M+E  AN++ E  +++AI   H   + VI+ I  +   C KE        +  
Sbjct: 179 STRDKVIMIEAGANEVPEAKMIEAIFAAHEVNQEVIKFIDTIVAECGKEKHAYTSCAVPE 238

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + F  + E ++    E++ V+ F  EK VR + +  +++K+   F +E+  W E  +   
Sbjct: 239 ELFVAIREIVTP---EEMEVAVFTDEKQVREENLRVIREKLEEAF-AENEEWLE-ILGEA 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L    R DGR  + +R ++A+  ++ R HGS++F RG TQ   + TL
Sbjct: 294 LYQYQKKTVRKMILKDHKRPDGRAIDQIRPLAAETDIIPRVHGSAMFTRGQTQICTITTL 353

Query: 355 GTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 354 APLSEAQRIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVL 413

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P   +FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     D
Sbjct: 414 PTEEEFPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKSAVAGISAGLVTGDTDD 473

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+++L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K+ R +I
Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTKQARTYI 533

Query: 532 LNE-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           L+E M+K + + R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I D+
Sbjct: 534 LDEVMAKTIEQPRPEVGPYAPKIRQMQIDPAKIGDVVGQRGKTINAIIEQTGVKIDITDE 593

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G+V +      +++ A +MI +I    E  ++++G+VV + +FGAF+ F   ++G+VHIS
Sbjct: 594 GSVSVCGVDAQKMDEAMKMIATIVTDFEAGQVFEGKVVSIKEFGAFIEFAPGKEGMVHIS 653

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           ++S ER+    DV+  GD V V  L  D  G+I  SMK V + 
Sbjct: 654 KISKERIKHVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVVEE 696


>gi|17231888|ref|NP_488436.1| polynucleotide phosphorylase/polyadenylase [Nostoc sp. PCC 7120]
 gi|81770047|sp|Q8YP11|PNP_ANASP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17133532|dbj|BAB76095.1| polyribonucleotide nucleotidyltransferase [Nostoc sp. PCC 7120]
          Length = 718

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/697 (42%), Positives = 430/697 (61%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSP-GREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ QV+   M  D +  P
Sbjct: 65  LYAAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQVVALTMSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V
Sbjct: 125 DVLAVTGASIATLIAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L      E     P  +D    + +
Sbjct: 185 IMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQLDLVAELGLEIVQEAPPEVDQTLENYI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIV 292
            +  S  IK+ L  + F   K  R   +D +K  +   ++    E       + N   + 
Sbjct: 245 RDRASDEIKKIL--AQFELTKPERDAALDVVKDNIATAIAELPEEDPIRLAATANSKALG 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
           + F+DI    +R  +++  VR+DGR  + VR +S+QVG+L  R HGS LF RG TQ +  
Sbjct: 303 NTFKDITKYFMRRQIVEDNVRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSA 362

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            TLGT  D Q + D L   Q   ++ HYNF P + GE   + AP RREIGHG LA RAI 
Sbjct: 363 CTLGTPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAIL 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+G
Sbjct: 423 PVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S  ++  A+ QAK  RLH
Sbjct: 483 DEVRVLTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKISGLSLEVIAQAIHQAKDARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M + + + R +   + PR+  + I PD I  VIG GGK I+GI E+TGAK++I+DD
Sbjct: 543 ILDKMLQTIDQPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV I++    + + AR +++ +T       +Y G+V +++  GAFV F   ++G++HIS
Sbjct: 603 GTVTISAVDENKAKRARNIVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V VK+ + D++G+I L+ 
Sbjct: 663 QLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTR 699


>gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
 gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
          Length = 719

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/696 (42%), Positives = 423/696 (60%), Gaps = 19/696 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            I + GR ++L+ G +A Q+ GAVL   G+T VL T       + G DF PL V+Y+ER 
Sbjct: 7   SISFDGRDIRLKIGLLAPQAGGAVLIESGDTSVLVTATRA-EGRPGIDFLPLLVDYEERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG+LRRE RP +   L SR+IDR +RPL     +++ Q++   +  D +  P 
Sbjct: 66  YAGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V+++  AS A++++ +PF GP+   +V  +   +++NP   E   G LDL V+G+ + V+
Sbjct: 126 VLAVTGASVAVVMAQIPFYGPMAAVRVGLLGDDFIINPTYREVRNGDLDLVVAGSPEGVV 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKLE 241
           MVE  ANQL E  +++AI FG+     +I+A  ++AK         E    D+     + 
Sbjct: 186 MVEAGANQLPEQDIIEAIDFGYEAVCDLIKAQQEIAKELNIDITPGESPQEDTTLVEFIR 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS---------WNEGEIV 292
           E  ++ IK+ L    F   K  R   +D++K   V    +E             +   I 
Sbjct: 246 ERTTEPIKQVLTQYHFA--KSERDAALDEIKHTQVEEPLAEKPEDDPLQVLISEDPKAIS 303

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
            +F+D+  + +R  ++   +R+DGR+ + VR +S +VG L  R HGS LF RG TQ + +
Sbjct: 304 RIFKDVTREFMRQQIVQDSIRVDGRNLDQVRPVSCRVGFLPKRVHGSGLFNRGLTQVLSI 363

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D Q +D L       +M HYNF P + GE   M +P RREIGHG LA RA+ P
Sbjct: 364 ATLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETKPMRSPGRREIGHGALAERALLP 423

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   QFPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI+KPV+G AMGL+K+G+
Sbjct: 424 VLPVKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPITKPVSGAAMGLIKEGE 483

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++  A+ QAK  RLHI
Sbjct: 484 EVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVIAKAIHQAKPARLHI 543

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L  M + + + R  L  F PR+  M I PD I  VIG GGK I+GI E+TG K++IDDDG
Sbjct: 544 LESMLEAIQKPRSDLSPFAPRLLTMKIDPDLIGLVIGPGGKTIKGITEETGVKIDIDDDG 603

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IAS+   +   A ++I+ +T       +Y G++ +++  GAFV     ++G++HISQ
Sbjct: 604 TVTIASTDSDKAARACQIIQGMTRKLNEGDVYVGRITRIIPIGAFVEVLPGKEGMIHISQ 663

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           L+  RV +  D V  GD V VK+ + D +G+I L+ 
Sbjct: 664 LADYRVPRVEDEVAIGDEVIVKVREIDSKGRINLTR 699


>gi|75909486|ref|YP_323782.1| polynucleotide phosphorylase/polyadenylase [Anabaena variabilis
           ATCC 29413]
 gi|123608898|sp|Q3M7Z9|PNP_ANAVT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|75703211|gb|ABA22887.1| 3' exoribonuclease [Anabaena variabilis ATCC 29413]
          Length = 718

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/697 (42%), Positives = 429/697 (61%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSA-GREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q++   M  D +  P
Sbjct: 65  LYAAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTMSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V
Sbjct: 125 DVLAVTGASIATLIAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L      E     P  +D    + +
Sbjct: 185 IMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQLDLVAELGLEIVQEAPPEVDQTLENYI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIV 292
            +  S  IK+ L  + F   K  R   +D +K  +   ++    E       + N   + 
Sbjct: 245 RDRASDEIKKIL--AQFELTKPERDAALDVVKDNIATAIAELPEEDPIRLAATANSKALG 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
           + F+DI    +R  +++  VR+DGR  + VR +S+QVG+L  R HGS LF RG TQ +  
Sbjct: 303 NTFKDITKYFMRRQIVEDNVRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSA 362

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            TLGT  D Q + D L   Q   ++ HYNF P + GE   + AP RREIGHG LA RAI 
Sbjct: 363 CTLGTPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAIL 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+G
Sbjct: 423 PVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S  ++  A+ QAK  RLH
Sbjct: 483 DEVRVLTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKISGLSLEVIAQAIHQAKDARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M + +   R +   + PR+  + I PD I  VIG GGK I+GI E+TGAK++I+DD
Sbjct: 543 ILDKMLQTIDTPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV I++    + + AR +++ +T       +Y G+V +++  GAFV F   ++G++HIS
Sbjct: 603 GTVTISAVDENKAKRARNIVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V VK+ + D++G+I L+ 
Sbjct: 663 QLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTR 699


>gi|188589111|ref|YP_001920624.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251780820|ref|ZP_04823740.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|226702637|sp|B2V4H5|PNP_CLOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188499392|gb|ACD52528.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E3
           str. Alaska E43]
 gi|243085135|gb|EES51025.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 704

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/702 (41%), Positives = 442/702 (62%), Gaps = 9/702 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V  +    AG+ +K+E G+I   S+ A   +YG+TV+L  V      + G DFFPL+
Sbjct: 1   MNNV--LSTNIAGKEMKVEFGKIGMLSNAATFMSYGDTVILTNVNASSEPRVGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+ER YAVGKIPGG+++RE RP+E  IL  R +DR++RPLF K Y+N+ QV+  V+  
Sbjct: 59  VEYEERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           + ++ P ++++ AAS AL LS +PF  PV   QV  I+  +++NP   E ++ +L L V 
Sbjct: 119 EKDNLPEILAINAASMALCLSSIPFAMPVAAVQVGLIDNNFIVNPNATEREESTLHLTVC 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
            T++ V+M+E   N++ ED+++ AI FG +EC+ +I    +  K   KE  +        
Sbjct: 179 ATKERVMMIEAGGNEIPEDIMIAAIKFGFDECQNIINFQEEAVKKFGKEKDIPTLFTVDE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           ++E+++ +   + ++ + +I +K  R   ID + +K+   F  ++     G+I  V  ++
Sbjct: 239 EVEKDIKEFASDMIKEAMYITDKDERNAAIDAVNQKVKEEFGEKYEDKF-GDIKEVLYNM 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q KVVR ++L  K R DGR  + VR +  +VGLL RTHG+ LF RG TQ + V TLG   
Sbjct: 298 QKKVVRHMLLKDKRRPDGRAFDQVRPLGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAVG 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D +   Q   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 DIQILDGIDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVP+ +P AGIAMGL+   D  +  +L
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLSEEQVL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ R+ IL +++
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLKGFSFNVVENAIRDARKARMTILEKIN 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +S  R  +  + P+ E + I PD+IR+VIG GGKVI  I++ TG K++I +DG+V ++
Sbjct: 538 ECISSPREDVSLYAPKTETIQIDPDKIRSVIGAGGKVINKIIQDTGVKIDIKEDGSVFVS 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  ER
Sbjct: 598 SSDHEGVKEAIKIIEGLTKDVKAGEIYLGKVTKITTFGAFVEILPNKEGLVHISKLDKER 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGK 696
           V K  DVV  GD + VK+ + D +G+I LS K V  DQ   +
Sbjct: 658 VNKVEDVVSVGDEILVKVTEIDSQGRINLSRKDVLLDQENKE 699


>gi|291550238|emb|CBL26500.1| polyribonucleotide nucleotidyltransferase [Ruminococcus torques
           L2-14]
          Length = 695

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/695 (39%), Positives = 418/695 (60%), Gaps = 9/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y 
Sbjct: 3   KKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPREGIDFFPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  ERMYAVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   + +   L L V+ T++
Sbjct: 123 SPELTAMLGAALATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVASTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEE 242
            V+M+E  A ++ E  +++AI   H+  + VI     +   C K      S     +L +
Sbjct: 183 KVIMIEAGAKEVPEAKMIEAIFAAHDLNQKVIAFFDTIVAECGKPKHEYQSFAVPQELFD 242

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++   ++  + F  +K  R + I  + +++   F+         ++       Q K
Sbjct: 243 AIQEIVPAAEMEEAVFTDDKQTREENIRVITERLEEAFADNEEYL--AKLGEAVYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR  + +R ++A+V L+ R HGS++F RG TQ   + TL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRAIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICTMTTLAPLSEAQ 360

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L    +   +M HYNF   + GE      P RREIGHG LA RA+ PVLP  ++FP
Sbjct: 361 KLDGLDEAEKTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSESEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L+D
Sbjct: 421 YAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +I++E MSK
Sbjct: 481 IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R ++GEF P++  M I P +I +V+G  GK I  I+++TG K++IDD+G V I  
Sbjct: 541 AIAEPRKEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIDETGVKIDIDDEGNVSICG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    +E A + I++I    E  ++++G+V+ + +FGAFV F   ++G+VHIS+LS +RV
Sbjct: 601 TEKENMEKAAKYIQTIVTDYEAGQLFEGKVISIKEFGAFVEFAPGKEGMVHISKLSKQRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            K  DVV  GD V V  L  D  G+   SMK V +
Sbjct: 661 DKVEDVVSIGDVVKVVCLGKDKMGRFSFSMKDVAE 695


>gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
 gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
          Length = 770

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 434/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 52  MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 111

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 112 QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 171

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  D+ ++  +DL V
Sbjct: 172 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMV 231

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E N++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 232 GATYENIMMVEGEMNEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 289

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E        I 
Sbjct: 290 VNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAPLID 349

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ++  V
Sbjct: 350 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTV 409

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 410 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 469

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 470 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 527

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 528 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 587

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 588 ILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 647

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   IE A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 648 DNIGRIEIAGTNKKCIEDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 707

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 708 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPRPER 758


>gi|226323220|ref|ZP_03798738.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
 gi|225208410|gb|EEG90764.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
          Length = 695

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/695 (39%), Positives = 423/695 (60%), Gaps = 9/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E+E AGR L+++ GR+A+Q++GAVL  YG+TVVL+T       ++G DFFPL+V Y 
Sbjct: 3   KKFEMELAGRTLRVDVGRVAKQANGAVLMHYGDTVVLSTATASDKPREGIDFFPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   V+  + + 
Sbjct: 63  EKLYAVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVLSVEQDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
           SP + +M+ ++ A  +S +PF+GP    QV  ++G+ V NP  ++ ++  L L V+ T++
Sbjct: 123 SPELTAMLGSAIATAISDIPFDGPTASTQVGLVDGELVFNPTAEQKEKSDLALTVASTRE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ E  +L+AI   H   + VI  I ++   C K      S     +L E
Sbjct: 183 KVIMIEAGANEVPEAKMLEAIFAAHEVNQKVIAFIDQIVAECGKPKHDYVSFAVPEELFE 242

Query: 243 EMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++  E++ V+ F  +K  R + I  + +K+   F+   +     ++       Q K
Sbjct: 243 AIQKIVTPEEMEVAVFTDDKQTREENIRKITEKLEEAFA--DNEEWLAKLGEAVYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR ++L    R DGR  E +R ++A++ L+ R HGS++F RG TQ   + TL    + Q
Sbjct: 301 VVRKMILKDHKRPDGRAIEEIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLSEAQ 360

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            VD L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 361 KVDGLDESETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L+D
Sbjct: 421 YAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISCGLVTGATDDDYLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + ++ R++IL+E M+K
Sbjct: 481 IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIARTRKARVYILDEVMAK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R Q+G++ P++  M I P +I  V+G  GK I  I+E+TG K++I D+G+V I  
Sbjct: 541 TIAEPRAQVGKYAPKIIQMNIDPAKIGEVVGQRGKTINAIIEKTGVKIDITDEGSVSICG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                +E AR+MI +I    E   + +G VV + +FGAF+ F   ++G+VHIS+++ +R+
Sbjct: 601 VDADSMEQARKMIATIVTDFEAGMVLEGDVVSIKEFGAFIEFAPGKEGMVHISKIAKQRI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
               DV+  GD V V  L  D  G++  S+K V +
Sbjct: 661 DHVEDVLSIGDHVKVVCLGKDKMGRLSFSIKDVAE 695


>gi|329943105|ref|ZP_08291879.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
 gi|332287687|ref|YP_004422588.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
 gi|313848261|emb|CBY17262.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           RD1]
 gi|325507208|gb|ADZ18846.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
 gi|328814652|gb|EGF84642.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
 gi|328914940|gb|AEB55773.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
          Length = 694

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/690 (42%), Positives = 425/690 (61%), Gaps = 4/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V +E  G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V
Sbjct: 3   FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCAA-NLEEAVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  ++GK  GG+++RE RPTE EIL SR+IDRS+RP        + Q++  V  +D
Sbjct: 61  DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
             + P  +++   SAAL +S +P    V G +V ++N ++V+NP   E     ++L ++G
Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSK 239
           T++A+LM+E   +  +E+ V++AI FGH     + +A+    K   KE           +
Sbjct: 181 TENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKQIGKEKNTSQIVSLPEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           ++  ++ +++        I EK         L+ ++V     E+  + E  I   F+  +
Sbjct: 241 VQSAVNALVEGKFVDLLKIKEKKAFEAASKQLENEVVEQLQEENEVFTEFNIKIAFKQAK 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +  +R+++ ++ +R DGR   T+R IS +   L RTHGS LF RG+TQ + V TLG+   
Sbjct: 301 SNFMRSLIREQGIRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAM 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP   +F
Sbjct: 361 AQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPVKF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D D   ILSDI
Sbjct: 421 PYTIRIESSITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHVTILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG EDHLG MDFKVAG   GITA QMD+K+ GI+  IM  AL QAK GR  IL  M + L
Sbjct: 481 SGLEDHLGDMDFKVAGNTEGITAFQMDIKVEGITPAIMRAALAQAKDGRQDILETMKQAL 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D G V I++SS
Sbjct: 541 AAPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSGLVSISASS 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              IE A+ +I  +    EV KIY+G+V  V+ FGAFV     ++GL HIS+ S +R+  
Sbjct: 601 PQAIEKAKSIIEGLVGEVEVGKIYEGRVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D VK+GDT+ VKLL  +++G+ KLS K 
Sbjct: 661 VGDFVKQGDTLTVKLLSINEKGQYKLSHKA 690


>gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
 gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
          Length = 741

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/709 (43%), Positives = 447/709 (63%), Gaps = 20/709 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  IE +GR   ++ GR+A Q+   VLA YGETVVL     +  L++G DFFPLTV+Y+
Sbjct: 7   ITRTIEISGRTFSVDIGRVAGQASAGVLARYGETVVLVAATREA-LREGLDFFPLTVDYE 65

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVG+IPG +++RE RP E  IL +R+IDRSIRPLF + +  +  V+  VM  D + 
Sbjct: 66  ERHYAVGRIPGSFMKREGRPGEKAILAARLIDRSIRPLFPRNFTQDVHVVALVMSVDQDC 125

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +++ AS AL LS +PF GPV    +  ++GQ V+NP L++D+   L L V+GT++
Sbjct: 126 SPAITAILGASVALTLSDIPFAGPVGAVIMGMVDGQLVVNPTLEQDEKSDLHLTVAGTRE 185

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC-----AKEPIVIDSKDF- 237
           A+ MVE  A ++SE+++++A+   H E + + E + ++         A   I + + +  
Sbjct: 186 AINMVEAGAKEVSEEIIVEALTKAHAEIQRIAEWVGEIRAEVEPLGLAHPKIEVPANEPG 245

Query: 238 SKLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            +L E +     E +R +         +K    + ++  K ++++          E  + 
Sbjct: 246 PELVEAVRSAGYEKMRAAVHHCKNERLDKKSADRHLEGTKAEIINAVLENFPEE-EQRLK 304

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S+ + ++ + VR ++L +KVR+DGR  + +RDIS +V +L RTHGS LF RG TQ + V+
Sbjct: 305 SLVDKLEKEAVRELVLKEKVRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVL 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   DEQ +D L   +   FM HYNF   +TGE   + +  RREIGHG LA RA+  V
Sbjct: 365 TLGAVRDEQILDGLDTQETKRFMHHYNFPSFSTGEARPIRSAGRREIGHGALAGRALEAV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+RIVSE+  S+GS+SMA+VCGS LALMDAGVPI  PVAGIAMGL+K+GD+
Sbjct: 425 LPGEDVFPYTIRIVSEVLSSNGSTSMASVCGSCLALMDAGVPIKAPVAGIAMGLIKEGDE 484

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +L+DI G EDHLG MDFKVAGT+ G+TA+QMD+KI GI+  I+  A+ QA+  RL+IL
Sbjct: 485 VAVLTDIQGTEDHLGDMDFKVAGTEQGVTALQMDIKIAGITPEILAQAMAQAREARLYIL 544

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           +   +V+   R ++    PR+    I P++IR++IG GGK+IR I E TG  ++++DDG 
Sbjct: 545 DRYKEVIPGPRPEISPRAPRIIHTTIDPEKIRDIIGPGGKIIRKITETTGVDIDVEDDGR 604

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF------CGARDGL 646
           V I +      + A E+I+++T   +V ++Y G+VVK+MDFG FV           +DGL
Sbjct: 605 VFITAPDPEGGKKALEIIKTLTAEVKVGEVYLGRVVKIMDFGCFVEVIPGVLGLPGKDGL 664

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHIS L+  RV K  DVV+EGD + VK + FD++G++KLS K   +   
Sbjct: 665 VHISHLAHNRVRKVEDVVREGDQILVKAIGFDNQGRLKLSKKEAMEPPA 713


>gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC
           6803]
 gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC
           6803]
          Length = 718

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/696 (42%), Positives = 422/696 (60%), Gaps = 16/696 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T    +  +DG DF PLTV+Y+ R
Sbjct: 6   KSISFDGRDIRLKMGTLAPQAGGSVLIQSGDTAVLVTATRAK-GRDGIDFLPLTVDYEGR 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E   LISR+IDR +RPLF    ++E Q++   +  D E  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++L+ +PF+GP+   +V  +   +++NP   E   G LDL V+GT   +
Sbjct: 125 DVLAVTGASVAVILAQIPFKGPMAAVRVGLVGDDFIINPTYREVHNGDLDLVVAGTPAGI 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEM 244
           +MVE  ANQL E  +++AI FG+   + +I A  +L           +    +  +EE +
Sbjct: 185 VMVEAGANQLPEQDIIEAIDFGYEAVQDLINAQRELMTDLGITLATSEPPPVNTAVEEFI 244

Query: 245 SQMIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSS---------WNEGEIVS 293
           +    + +      F   K  R   +D++K   V    +E             +   + +
Sbjct: 245 ANRASKKIITVLGQFDLGKDGRDAALDEIKATEVETAIAELPETDPVKQSVEEDPKLVGN 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVV 352
           +++ +  K++R  ++D  VR+DGR  E VR IS +VG L R  HGS LF RG TQ + + 
Sbjct: 305 LYKALTKKLMRKQIVDDGVRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLA 364

Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLG+  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA RAI P
Sbjct: 365 TLGSPGDAQDLADDLHPEDEKRYLHHYNFPPYSVGEARPMRSPGRREIGHGALAERAIIP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+K+GD
Sbjct: 425 VLPPQEDFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIKEGD 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  ++  A+ QA   RLHI
Sbjct: 485 EIRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKIDGLSMEVVSKAIMQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M   + E R +L  F PR+  + I P+ I  VIG GGK I+GI EQT  K++I DDG
Sbjct: 545 LDKMLATIREPRPELSPFAPRLLTLKIEPEHIGMVIGPGGKTIKGITEQTSCKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IASS     E AR+MI ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIASSEGERAERARQMIYNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           L+  RV K  D V  GD V VK+ + D +G++ L+ 
Sbjct: 665 LTEGRVGKVEDEVGVGDEVIVKVREIDSKGRLNLTR 700


>gi|139439612|ref|ZP_01773025.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
           25986]
 gi|133774953|gb|EBA38773.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
           25986]
          Length = 748

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/699 (41%), Positives = 429/699 (61%), Gaps = 10/699 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +   E  G+    E+G +A+Q+ GA L   G+T +L TVV  +  K   DFFPLTV++ E
Sbjct: 5   SKTFELYGKTYTFESGELAKQATGACLVKQGDTTMLDTVVVSKERK-NYDFFPLTVDFNE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGGYL+RE RP+E   L +RMIDR IRP F + ++NE  ++   +  D  + 
Sbjct: 64  KMYAAGRIPGGYLKREGRPSEKATLTARMIDRPIRPSFPEGFRNEVHIVATSLVADQVNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             V++++ AS A+ L G+PFEGP+   ++      G++++NP  +E +   LDL + G+ 
Sbjct: 124 FDVINVMGASLAMTLGGVPFEGPLACVRIGRNVETGEFIVNPTYEERENSDLDLELGGSA 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KL 240
           D + MVE  A ++SED +L A+ FG        +A  +      +    I  K++   + 
Sbjct: 184 DFISMVEAGAEEISEDDMLAAMKFGQEALAAFCQAQVEFVAEWEQVNGAIVKKEYPLDQP 243

Query: 241 EEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            EE+ + I    +++  +    +K  R  +++ LK+ + + F+ E  +  E EI    + 
Sbjct: 244 VEEVQERIFAHYDEMAAALRDADKLSRIGKVEALKESIRAEFTDEEQAAWEREIPVALKK 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ K +RT++++   R+DGR ++ +R I  +   L   HGS LF RG TQ + V++LG  
Sbjct: 304 LEKKAMRTMVVETGERVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVLSVLSLGML 363

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++  T+   +M HYNF P  TGE  RMG+P RREIGHG LA RA+ PVLP   
Sbjct: 364 NEGQRLDTIEPTEGKRYMHHYNFPPFCTGETGRMGSPKRREIGHGNLAERALLPVLPDEN 423

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMD GVPI +PV+GIAMGL+++    ++LS
Sbjct: 424 EFPYAIRVVSEVMESNGSSSMASTCGSTLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLS 483

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT  GITA+QMD K  G++ +I+  ALQQAK GR  IL +M  
Sbjct: 484 DIQGLEDFLGDMDFKVTGTTEGITALQMDNKATGLTFDILARALQQAKEGRAFILQKMLD 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ E R       PR+  + +P D+IR+VIG GGKVIRGI ++TGA V+I +DGTV +  
Sbjct: 544 VIPEPRHTTRSTAPRIVSIQVPTDKIRDVIGSGGKVIRGIQDETGASVDIQEDGTVFVGG 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    ++ A E I+ I  VPE  + Y G+VV +  FGAFV+    +DGL+HIS+++  RV
Sbjct: 604 T-GESVDQAVERIKLIIKVPEPGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAKGRV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            K  DV+  GD V V +++ DDRGKI L      +   +
Sbjct: 663 EKVEDVLNVGDEVKVVVIEVDDRGKISLDRLDKPEAPAR 701


>gi|168207524|ref|ZP_02633529.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           E str. JGS1987]
 gi|168216967|ref|ZP_02642592.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           NCTC 8239]
 gi|170661139|gb|EDT13822.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           E str. JGS1987]
 gi|182380890|gb|EDT78369.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           NCTC 8239]
          Length = 702

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/697 (41%), Positives = 444/697 (63%), Gaps = 5/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V +  K   ++EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEIEE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q +V
Sbjct: 243 AVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+FPYT
Sbjct: 362 LDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  +  +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ + + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S+  
Sbjct: 542 APREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAES 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 EGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            DVV  GD + VK+ + D +G+I LS K   +   + 
Sbjct: 662 EDVVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEE 698


>gi|18310662|ref|NP_562596.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           str. 13]
 gi|168214487|ref|ZP_02640112.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|81766989|sp|Q8XJS4|PNP_CLOPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|18145343|dbj|BAB81386.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           str. 13]
 gi|170714049|gb|EDT26231.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           CPE str. F4969]
          Length = 702

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/697 (41%), Positives = 444/697 (63%), Gaps = 5/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V +  K   ++EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEIEE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q +V
Sbjct: 243 AVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+FPYT
Sbjct: 362 LDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  +  +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ + + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S+  
Sbjct: 542 APREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAES 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 EGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            DVV  GD + VK+ + D +G+I LS K   +   + 
Sbjct: 662 EDVVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEE 698


>gi|332295429|ref|YP_004437352.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178532|gb|AEE14221.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
           narugense DSM 14796]
          Length = 721

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/704 (40%), Positives = 444/704 (63%), Gaps = 10/704 (1%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +VH++  E A G  + +ETG +A+Q++G+V    G+T+V +     +  +   DF PL
Sbjct: 1   MNEVHSITKEVAEGIVINIETGLLAKQANGSVTVRSGDTIVFSAATMSKEARSDIDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V++ E+ YA GK PGG+ +RE RP+E  IL SR+IDRSIRPLF K  +N+  +    + 
Sbjct: 61  VVDFDEKMYAAGKFPGGFFKREGRPSERAILYSRIIDRSIRPLFPKGLRNDVCISSFPLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D +    V+S++A+SAAL +S +PF+GPV   +V  I+ +++LNP +D+ ++  +D+ +
Sbjct: 121 IDNDFPVDVLSIIASSAALCISDIPFDGPVGAVRVGEIDKKFILNPTIDQIEKSDIDIVI 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
            G +D +LM+E   N++ ED +++ I +       + +   +L  +      ++  ++ +
Sbjct: 181 VGKEDNILMIEGSFNEIPEDKIIEIINYALPAITKICDIQKELISLVKPTKSLVYLQEPT 240

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV----SYFSSEHSSWNEGEIVS 293
           + +   +  ++ +++     +  K        +LK +++      F SE    N   I  
Sbjct: 241 EDITSSLDSILTDNITDKFPLKTKQDFENLEKELKDEILSVLSDRFGSEFVEANILLINQ 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F++   K++R  ++  K R+DGR  + +R IS QVGLL R HGS+LF RG TQA+ + T
Sbjct: 301 AFQNKLKKIIRNYVIKNKKRVDGRSLDEIRPISIQVGLLPRAHGSALFTRGQTQALSIAT 360

Query: 354 LGTREDEQYVDSL---SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           LGT+ED Q +D+L   S   R  +M HYNF   + GE      P RREIGHG LA +A+ 
Sbjct: 361 LGTQEDSQIIDTLYQSSNEIRKRYMHHYNFPGFSVGEARPSRGPGRREIGHGALAEKALL 420

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP+ + FPYT+R+VSEI ES+GSSSMA+ CGSSL+LMDAGVPISK V GIAMGL+ + 
Sbjct: 421 PVLPKESDFPYTIRVVSEILESNGSSSMASACGSSLSLMDAGVPISKHVGGIAMGLIYEN 480

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           ++ IILSDI+G ED +G MDFKV GT  G++A+Q+D+K+ GI  + +  A+++A  GR  
Sbjct: 481 EEIIILSDITGLEDAIGDMDFKVTGTIDGVSALQLDVKVPGIPIDALSKAIKKAYEGRKS 540

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M++ +S  R  L  + PR+E++ I P++I +VIG GGK+I+ I+E+TG+K++I+ D
Sbjct: 541 IIEKMNQAISHPREMLSNYAPRIEMIQINPEKISDVIGQGGKIIKKIIEETGSKISIEQD 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + IAS+S   +    E+I++IT      ++Y G+V K+ +FGA V     ++GLVHIS
Sbjct: 601 GKIYIASTSKEGLNKTIEIIQNITKPIVPGQVYIGKVTKIFNFGALVEISPGKEGLVHIS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           +LS  RV    DV+K GD V VK+LD +  GKI LS+K + +N 
Sbjct: 661 ELSKTRVKNVEDVLKLGDEVTVKVLDLESNGKINLSIKALSENP 704


>gi|110799658|ref|YP_696367.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           ATCC 13124]
 gi|168211432|ref|ZP_02637057.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           B str. ATCC 3626]
 gi|123344675|sp|Q0TPS3|PNP_CLOP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110674305|gb|ABG83292.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           ATCC 13124]
 gi|170710551|gb|EDT22733.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           B str. ATCC 3626]
          Length = 702

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/697 (41%), Positives = 444/697 (63%), Gaps = 5/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V +  K   ++EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEIEE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q +V
Sbjct: 243 AVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+FPYT
Sbjct: 362 LDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAKFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  +  +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ + + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S+  
Sbjct: 542 APREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAES 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 EGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            DVV  GD + VK+ + D +G+I LS K   +   + 
Sbjct: 662 EDVVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEE 698


>gi|317490521|ref|ZP_07948999.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
           1_3_56FAA]
 gi|316910372|gb|EFV32003.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
           1_3_56FAA]
          Length = 741

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/691 (43%), Positives = 432/691 (62%), Gaps = 6/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E  G+  +LETG +A+Q+ G+V+ T G+T VL T V  +  KD  DFFPLTV
Sbjct: 1   MEKIVESFELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           ++ E+ YAVG+IPGGYL+RE+RP++   L +RM+DR IRP F+  +K E  V+   +  D
Sbjct: 60  DFIEKMYAVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFV 178
             + P  + ++ ASAALML   PF+GP    ++      G++++NP  +E +   L+L +
Sbjct: 120 SINPPDTICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTI 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT D + MVE  A+++SE+ +L A+ FG        EA  +       EP+        
Sbjct: 180 AGTADYISMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVAD 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSEHSSWNEGEIVSVFED 297
               E       ++  +    +K  R  ++++LK ++    FS E  +  +G+I +  + 
Sbjct: 240 PAIAERVAPFMAEMSAALRDADKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ K +R ++++   R DGR  E +R +    G L R HGS LF RG TQA+ V TLG  
Sbjct: 300 LEKKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGML 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++   +   +M  YNF P  TGE  RMGAP RREIGHG LA RA+ PVLP   
Sbjct: 360 NEWQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSED 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI  PV+GIAMGL+K+GDD +ILS
Sbjct: 420 EFPYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT  GITA+QMD K  G+S +I+  AL+QA  GR +IL+ M +
Sbjct: 480 DIQGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++  R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+
Sbjct: 540 TIAAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 +AA+ MI  I   PEV + + G+VV + DFGAFV     +DGL+HIS+++  RV
Sbjct: 600 IEGPAGDAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
            K  DV+  GD + V++L+ D + GKI L  
Sbjct: 660 GKVEDVLNLGDIIKVEVLEVDPKTGKISLDR 690


>gi|284044685|ref|YP_003395025.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
           14684]
 gi|283948906|gb|ADB51650.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
           14684]
          Length = 761

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/688 (41%), Positives = 438/688 (63%), Gaps = 8/688 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  + +E  G+ +  ETGR+A+Q+ GAV+   G+T+VL+T           DF PLTV+ 
Sbjct: 5   VTRLSVEIGGKEISFETGRMAKQASGAVVVRSGDTMVLSTATAGN--LRDVDFLPLTVDV 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YA GKIPG + +RE R  E   L +RM+DR IRPLF K ++ ETQ++   +  D E
Sbjct: 63  EERMYAAGKIPGSFFKREGRAGEKATLTARMVDRPIRPLFPKGWRRETQLVTLTLSVDHE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFVSGT 181
               V++M  ASAALM+S +PF  PV   ++  ++G +V+NP  ++  +   LDL V+GT
Sbjct: 123 HPYDVLAMNGASAALMISDIPFPTPVGSVRIGKVDGNFVVNPNEEDLLENTDLDLIVAGT 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           ++A+LMVE  AN++ E  +LDA+   H+  K +     +LA+   K    ++     + L
Sbjct: 183 EEAILMVEAGANEIPEAEILDALDIAHDAIKKLCRLQWELARKAGKPKTEVEVPQVDERL 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS-EHSSWNEGEIVSVFEDIQ 299
             ++++     L  +  + +K  R      ++ ++ + +++ E  +    ++   F+ ++
Sbjct: 243 LRQLTRSHGRKLDRATAVVDKLERQDATKAVEAEVFARYAADEDDAETRAKVQLAFDKLE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             ++R  +  KK R DGR ++ +R I+ +VG+  RTHGS+LF RG TQA+   +LGT  +
Sbjct: 303 KSLIRERIAIKKKRPDGRRADEIRPITIEVGVTPRTHGSALFTRGQTQALSTASLGTTRE 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           E  +D+L    R  +  HYNF P + GE   M  P RR+IGHG LA RA+ P++P T +F
Sbjct: 363 EMRLDTLGLETRKYYFHHYNFPPFSVGEAGFMRGPKRRDIGHGALAERALVPMVPSTEEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS+I ES+GSSSMA+VCGSSL+LMDAGVP+ +PVAGIAMGL+K+GDD+I+LSDI
Sbjct: 423 PYAIRVVSDILESNGSSSMASVCGSSLSLMDAGVPLKRPVAGIAMGLIKEGDDYIVLSDI 482

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G EDHLG MDFKVAGT  GITA+QMD+KI G++ +I+  AL QAK GR  IL +M+  L
Sbjct: 483 AGIEDHLGDMDFKVAGTSEGITALQMDIKITGVTFDILRDALAQAKEGREFILGKMATAL 542

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           ++ R +L ++ PR+  + I P++I  +IG GG+ IRG+ E+  A+++++D+G V I + +
Sbjct: 543 AKPREELSKWAPRISTVQIDPEKIGLLIGKGGETIRGLCEEFEAQIDVNDEGQVLIYAQN 602

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVA 658
               +A  + IRS+T   E+   +KG+VVK   FGAFV      DGL+HIS +S   RV 
Sbjct: 603 GELGDALADRIRSMTKEVEIGDAFKGRVVKTTTFGAFVELAKGTDGLLHISNISPGRRVD 662

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
              +V+ +GD + V++++ D +RG+I L
Sbjct: 663 TVEEVINKGDEIDVRVVEVDRERGRIGL 690


>gi|197301798|ref|ZP_03166868.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
           29176]
 gi|197299238|gb|EDY33768.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
           29176]
          Length = 695

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/699 (40%), Positives = 418/699 (59%), Gaps = 11/699 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF     E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       +DG DFFPL+
Sbjct: 1   MF--KKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPRDGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y ER Y+VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYNERMYSVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMAV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D + SP + +M+ A+ A  +S +PF+GP+   QV  ++G++V NP   +     L L V+
Sbjct: 119 DQDCSPELTAMLGAALATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKVVSDLALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS- 238
            T++ V+M+E  A ++ ED +++AI   H   + VI     +   C K+     S     
Sbjct: 179 STKEKVIMIEAGAKEVPEDKMIEAIFAAHELNQKVITFFDTIVAECGKKKHEYQSFAVPQ 238

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L + + +++   ++  + F  +K  R + I  + +K+   F+   +     ++      
Sbjct: 239 ELFDAIQEIVTPAEMEEAVFTDDKQTREENIRVITEKLEEAFA--DNEEWLAKLGEAVYQ 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR  + +R ++A+V L+ R HGS++F RG TQ   V TL   
Sbjct: 297 YQKKTVRKMILKDHKRPDGRAIDQIRPLAAEVDLISRVHGSAMFTRGQTQICTVTTLAPL 356

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 357 SEAQRLDGLDETETTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
           A+FPY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD++
Sbjct: 417 AEFPYAIRTVSETFESNGSTSQASVCASSMSLMSAGVPIKSAVAGISAGLVTGETDDDYL 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +I++E
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDE 536

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R ++GEF P++  M I P +I +V+G  GK I  I+E+TG K++IDDDG V
Sbjct: 537 VMSKAIAEPRAEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIEETGVKIDIDDDGNV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I  +    +E A + I +I    E  ++++G+VV + +FGAFV F   ++G+VHIS+LS
Sbjct: 597 SICGTEKENMEKAAKYIHTIVTDYEAGQLFEGKVVSIKEFGAFVEFAPGKEGMVHISKLS 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
             RV K  DVV  GD V V  L  D  G+   SMK V +
Sbjct: 657 KNRVEKVEDVVSLGDVVKVVCLGKDKMGRFSFSMKDVAE 695


>gi|325831548|ref|ZP_08164802.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
 gi|325486802|gb|EGC89250.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
          Length = 741

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/691 (43%), Positives = 432/691 (62%), Gaps = 6/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +      E  G+  +LETG +A+Q+ G+V+ T G+T VL T V  +  KD  DFFPLTV
Sbjct: 1   MEKIVESFELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           ++ E+ YAVG+IPGGYL+RE+RP++   L +RM+DR IRP F+  +K E  V+   +  D
Sbjct: 60  DFIEKMYAVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFV 178
             + P  + ++ ASAALML   PF+GP    ++      G++++NP  +E +   L+L +
Sbjct: 120 SINPPDTICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTI 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT D + MVE  A+++SE+ +L A+ FG        EA  +       EP+        
Sbjct: 180 AGTADYISMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVAD 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSEHSSWNEGEIVSVFED 297
               E       ++  +    +K  R  ++++LK ++    FS E  +  +G+I +  + 
Sbjct: 240 PAIAERVAPFMAEMSAALRDADKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ K +R ++++   R DGR  E +R +    G L R HGS LF RG TQA+ V TLG  
Sbjct: 300 LEKKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGML 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++   +   +M  YNF P  TGE  RMGAP RREIGHG LA RA+ PVLP   
Sbjct: 360 NEWQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSED 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI  PV+GIAMGL+K+GDD +ILS
Sbjct: 420 EFPYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT  GITA+QMD K  G+S +I+  AL+QA  GR +IL+ M +
Sbjct: 480 DIQGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++  R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+
Sbjct: 540 TIAAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 EAA+ MI  I   PEV + + G+VV + DFGAFV     +DGL+HIS+++  RV
Sbjct: 600 IEGPAGEAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
            K  DV+  GD + V++L+ D + GKI L  
Sbjct: 660 GKVEDVLNLGDIIKVEVLEVDPKTGKISLDR 690


>gi|153814912|ref|ZP_01967580.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
 gi|317500424|ref|ZP_07958648.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089569|ref|ZP_08338468.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847943|gb|EDK24861.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
 gi|316898179|gb|EFV20226.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404937|gb|EGG84475.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 695

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/696 (41%), Positives = 418/696 (60%), Gaps = 15/696 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       +DG DFFPL+V Y ER
Sbjct: 5   YEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTSTASEKPRDGIDFFPLSVEYNER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D + SP
Sbjct: 65  LYAVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            + +M+ AS A  +S +PF+GP+   QV  I+G++V NP   + +   L L V+ T++ V
Sbjct: 125 ELTAMLGASLATSISDIPFDGPISTTQVGLIDGEFVFNPTAAQREVSDLALTVASTKEKV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
           +M+E  AN++ ED +++AI   H   + VI     +   C K     +S     + EE+ 
Sbjct: 185 IMIEAGANEVPEDRMIEAIFAAHELNQKVIAFFDTIVAECGKPKHEYES---CAIPEELF 241

Query: 246 QMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             IKE     ++  + F  EK +R   I  + +K+   F    +      +       Q 
Sbjct: 242 DAIKEIVPPAEMEQAVFTDEKQIREDNIRQITEKLEEAFI--DNEEWLSLLGEAIYQYQK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR  + +R ++A+V LL R HGS++F RG TQ   V TL    + 
Sbjct: 300 KTVRKMILKDHKRPDGRAIDQIRPLAAEVDLLPRVHGSAMFTRGQTQICTVTTLAPLSEA 359

Query: 361 QYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A+F
Sbjct: 360 QRLDGLDESETTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILS 477
           PY +R VSE  ES+GS+S A+VC SS++LM AGVPI   VAGI+ GLV     DD+++L+
Sbjct: 420 PYAIRTVSETFESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLVTGDTDDDYLVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +I++E M+
Sbjct: 480 DIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAISATKKARTYIIDEIMN 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +SE R ++GEF P++  M I P +I +V+G  GK I  I+EQTG K++IDD+G+V I 
Sbjct: 540 KAISEPRAEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDIDDEGSVSIC 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    +E A ++I +I    E  ++++G+V+ + +FGAF+ F   ++GLVHIS+++ ER
Sbjct: 600 GTEKTAMEKAAKIIHTIVTDFEAGQVFEGKVISIKEFGAFLEFAPGKEGLVHISKIAKER 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V K  DV+  GD V    L  D  G+   S++ V +
Sbjct: 660 VNKVEDVLSLGDVVKAVCLGKDKMGRFSFSIRDVAE 695


>gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
 gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
          Length = 743

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/698 (40%), Positives = 422/698 (60%), Gaps = 10/698 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +   +  G+   LE G +A+Q+ GA L   G++ VL TVV  +  K   DFFPLTV++ E
Sbjct: 5   SKTFDLFGKTYVLEAGELAKQATGAALVKQGDSTVLTTVVVSKERK-NYDFFPLTVDFNE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGGYL+RE RP+E   L +RMIDR IRP F   ++NE QV+   +  D ++ 
Sbjct: 64  KMYAAGRIPGGYLKREGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             V+ ++ AS A+ L G+PFEGP+   ++      G++++NP  +E D   LDL ++GT+
Sbjct: 124 VDVICVMGASLAMTLGGVPFEGPLACVRIGRDKETGEFIVNPTYEERDASDLDLELAGTR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFSKL 240
           D + MVE  A ++SE+ +L A+ FG        +A  +      +    IV       + 
Sbjct: 184 DFISMVEAGAEEVSEEDMLAAMQFGQEAIGAFCDAQLEFVAEWEQVNGAIVKREYPLDEP 243

Query: 241 EEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            EE+   I    +++  +    +K  R  ++ +LK+ + + F+ E  +  E EI    + 
Sbjct: 244 NEEVHDRIFAHYDEMAAALRDADKLARQDKVAELKEAIKAEFTEEEQAAWEREIPVNLKK 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R ++++   R+DGR +  +R I  +   L   HGS LF RG TQ + V++LG  
Sbjct: 304 LEKTAMRRMVVETGERVDGRAANEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLGML 363

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++   +   +M HYNF P  TGE  RMG+P RREIGHG LA RA+ PVLP   
Sbjct: 364 NEGQRLDTIEPVEGKRYMHHYNFPPYCTGETGRMGSPKRREIGHGNLAERALIPVLPDEN 423

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSE+ ES+GSSSMA+ CGS LALMD GVPI +PV+GIAMGL+++    ++LS
Sbjct: 424 EFPYAIRVVSEVMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTVVLS 483

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT+ GITA+QMD K  G++ +I+  AL+QAK GR  IL++M +
Sbjct: 484 DIQGLEDFLGDMDFKVTGTERGITALQMDNKATGLTFDILRTALEQAKEGRAFILDKMLE 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+   R       P+++ + IP + IR+VIG GG+ IRGI ++TGA ++I +DGTV +  
Sbjct: 544 VVPGPREDTRATAPKIQSITIPTENIRDVIGKGGETIRGIQDETGASIDIHEDGTVYVGG 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                + AA E I  I  VPEV + Y G+VV +  FGAFV+    +DGL+HIS+++  RV
Sbjct: 604 V-GDSVAAAIERIELIVKVPEVGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAQGRV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            K  DV+  GD V V +++ DDRGKI L      +   
Sbjct: 663 EKVEDVLNVGDEVKVTVIEIDDRGKISLDRLDKPEAPA 700


>gi|261856059|ref|YP_003263342.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
           neapolitanus c2]
 gi|261836528|gb|ACX96295.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
           neapolitanus c2]
          Length = 698

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/695 (47%), Positives = 465/695 (66%), Gaps = 3/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T + ++    + L TG IARQ+ GAV+   G+TVVL TVV + + + GQDF PLTV Y
Sbjct: 5   VFTEQFDYGRHSVTLTTGEIARQASGAVMVQMGDTVVLVTVVVESAPEPGQDFLPLTVEY 64

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPGG+ +RE R TE E LI+R+IDR +RPLF K + N+ QVI  V+  D E
Sbjct: 65  QEKFYAAGRIPGGFFKREGRSTEAETLIARLIDRPLRPLFPKGFYNQVQVIAQVLSLDPE 124

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
               + +M+ ASAAL LSGLPF+  +  A+V YIN  +VLNP   E     L+L V+GT+
Sbjct: 125 VPGDIPAMLGASAALALSGLPFDAHLGAARVGYINEAFVLNPAQTEMADSRLELVVAGTE 184

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           +AVLMVE EA++L E  +LDA++FGH   +  I AI +LA   A+  +      +   LE
Sbjct: 185 EAVLMVESEADRLPEATMLDAVMFGHEAAQSAIAAIRRLAANAARPAMAWAPPVEHPDLE 244

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            ++     + +  +  I EK  R  ++++L+++ ++ F ++  +     + S+ E +++ 
Sbjct: 245 AKIRTAFGDSIAETYQIAEKQQRYLRLNELREEAIAQF-ADDVAVPAKLVSSLIESLESS 303

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR  +LD   R+DGRD++T+R I+ + G+L R HGS+LF RG+TQA+VV TLG+  D Q
Sbjct: 304 VVRGRVLDGAARIDGRDTKTIRPITVRTGVLPRVHGSALFTRGETQALVVTTLGSARDAQ 363

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D++ G  +  F+ HYNF P + GE  R GAP RREIGHG LARR +  V+P     PY
Sbjct: 364 LIDAVVGEYKESFIFHYNFPPYSVGETGRFGAPKRREIGHGNLARRGVKAVIPNPENSPY 423

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           TLR+VSEITES+GSSSMA+VCG+SL++MDAGV I+ PVAGIAMGL+K+G+ F++LSDI G
Sbjct: 424 TLRVVSEITESNGSSSMASVCGASLSMMDAGVEIAAPVAGIAMGLIKEGNRFVVLSDILG 483

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM  AL QAK GRLHIL  M+  L+ 
Sbjct: 484 DEDHLGDMDFKVAGTADGVTALQMDIKINGITREIMSQALDQAKGGRLHILGIMNAALAA 543

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R  +    P+     I PD+IR VIG GG  I+GI   T  +++I DDG + I ++S  
Sbjct: 544 PRKSVAPNAPQFIKFKINPDKIREVIGKGGATIQGITRDTHTQIDISDDGQITITATSAE 603

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           + E AR  +  IT   EV KIY+G+VV++ DFGAFV+    +DGL+HISQ+S ERV + +
Sbjct: 604 QGEEARRRVEQITVEAEVGKIYEGKVVRITDFGAFVNILPGKDGLLHISQISDERVERVT 663

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           D ++EGD V V LL+ D +G+++L+M+ +D    +
Sbjct: 664 DKLQEGDNVRVLLLELDKQGRMRLTMRGLDAPQTE 698


>gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
           95/1000]
 gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
           95/1000]
          Length = 712

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/695 (41%), Positives = 444/695 (63%), Gaps = 5/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + TV+  + G  L LETG +A+Q+ G+V    G T +LATVV  +      DFFPLTVNY
Sbjct: 1   MVTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I  V+  D +
Sbjct: 61  NEKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
                ++++A+SAAL +S +PF GPV   ++ Y NG+Y++NP+  E   S LD+ V+G++
Sbjct: 121 MPTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDIIVAGSK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LM+E EA ++SE+V + AI   H E +  I+  +++A +C  + I  +  ++ ++L 
Sbjct: 181 DAILMIEGEAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKIEQELFEYDAELV 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQA 300
           + +++  +E +  + + P+K  R + +D+   ++  Y  ++        ++  +   I+ 
Sbjct: 241 KMVTEYGREKIEAANYNPDKAKRNESMDNAFNEVEEYIKTKIEDEKLISQVKGICHSIEE 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  +++K +R DGR  + +R IS    L+ R HGS+LF RG TQ + +VTLG+ +D 
Sbjct: 301 EIVREAIVEKGMRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDA 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D + G +   FM+HYNF P + GEV R G+P RREIGHG LA R+ + VLP   +FP
Sbjct: 361 QLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++  VAGIAMGL    D + +L+DI 
Sbjct: 421 YTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKVLTDIQ 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  GITA Q+D+K+ GIS  I+  AL+QAK+ R  IL+++   +S
Sbjct: 481 GVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATIS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
               ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V I D G + I +   
Sbjct: 541 NPN-EISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVINIFAPDT 599

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++    +I S    PEV ++Y G V  + +FGAF+      +GL HIS+L+ + V   
Sbjct: 600 PTLDKTISLINSYVKDPEVGEVYDGVVKDIKEFGAFIEILPGVEGLCHISELAYKHVMNV 659

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +V+K GD V VK++D    GK  LS K + +   
Sbjct: 660 EEVLKIGDEVKVKIIDV-KGGKYSLSRKALLEKPA 693


>gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8801]
 gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8802]
 gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801]
 gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802]
          Length = 718

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/698 (43%), Positives = 443/698 (63%), Gaps = 20/698 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T     + ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATRA-TGREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E  ILISR+IDR +RPLF +  +++ Q+I   +  D E  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            V+++  AS A++ + +PF GP+   +V  I   +++NP   E + G LDL V+G+ D V
Sbjct: 125 DVLAVTGASIAVIAARIPFFGPMAAVRVGLIGDDFIINPTYREIEIGDLDLVVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM-----CAKEPIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   + +         EP  ++    S +
Sbjct: 185 VMVEAGANQLPEQDIIEAIDFGYEAVRDLIQAQRDVMEALDIPLVIGEPPAVNEVLQSFI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEHS-----SWNEGEI 291
            +  S+ IK+ L    +  +K  R +Q+D++K+      ++    E       +     +
Sbjct: 245 SDRASESIKKVLMQ--YNLDKNARDEQLDEIKETAITNAIAELPEEDPVKVAATEEPKAV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIV 350
            ++++D+  K++R+ ++   VR+DGR  + VR IS++V LL R  HGS+LF RG TQ + 
Sbjct: 303 SNLYKDLTKKLMRSQIITDGVRVDGRKLDEVRPISSRVCLLPRRVHGSALFARGLTQVLS 362

Query: 351 VVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           + TLGT  D Q + D L       ++ HYNF P + GE   + +P RREIGHG LA RAI
Sbjct: 363 LATLGTPGDAQDLADDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAI 422

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            P+LP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+
Sbjct: 423 TPILPPQEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKE 482

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S  I+  A++QA   RL
Sbjct: 483 GDEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSMEIVAKAIEQALPARL 542

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL++M + LS  R  L  + PR+  M I P+QI  VIG GGK I+GI EQTG+K++I D
Sbjct: 543 HILDKMMETLSTPRKNLSPYAPRLLTMKIDPEQIGLVIGPGGKTIKGITEQTGSKIDIAD 602

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV IA+    + E A+++I ++T      ++Y G+V +++  GAFV     ++G++HI
Sbjct: 603 DGTVTIAALEAEKAEKAKQIIYNMTRKLNEGEVYMGRVTRIIQIGAFVEVLPGKEGMIHI 662

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           SQL+  RV K  D V  GD V VK+ + D +G++ L+ 
Sbjct: 663 SQLAEGRVGKVEDEVAVGDEVIVKVREIDAKGRLNLTR 700


>gi|290579654|ref|YP_003484046.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           NN2025]
 gi|254996553|dbj|BAH87154.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           NN2025]
          Length = 730

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/700 (41%), Positives = 439/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E  +AG+ L +E G++A+Q++GA L  YG++ VL+  V  + +  G DFFPL +NY
Sbjct: 3   KQVFETIFAGKKLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTG-DFFPLQINY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKRYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDAD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y++GQYV+NP  +E + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIIAAVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  I EK  R    + +K+ + + +   ++   E      ++  + E
Sbjct: 242 AEIVGKYNADLQKAVQIEEKKAREIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGDTQIVDGLDEEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EAFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           KV+   RL+L    P+++ + +  D+I+ VIG GG+ I  I+E+TG K++ID+DG + I 
Sbjct: 542 KVIPAPRLELAPTAPKIDTIKVDVDKIKIVIGKGGETIDKIIEETGVKIDIDEDGNIAIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I S+    +V +IY+ +VV++  FGAFV+     D L+HIS+++  R
Sbjct: 602 SSDQEAINRTKEIIASLVREAKVGEIYEAEVVRIEKFGAFVNLFDKTDALIHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             K  DV+  GD V VK++  DD+G+I  SMK +     +
Sbjct: 662 TNKVEDVLAVGDKVTVKVVKVDDKGRIDASMKALLPRPPR 701


>gi|257791379|ref|YP_003181985.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
           2243]
 gi|257475276|gb|ACV55596.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
           2243]
          Length = 741

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/691 (43%), Positives = 431/691 (62%), Gaps = 6/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
                   E  G+  +LETG +A+Q+ G+V+ T G+T VL T V  +  KD  DFFPLTV
Sbjct: 1   MKKIVESFELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKD-YDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           ++ E+ YAVG+IPGGYL+RE+RP++   L +RM+DR IRP F+  +K E  V+   +  D
Sbjct: 60  DFIEKMYAVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFV 178
             + P  + ++ ASAALML   PF+GP    ++      G++++NP  +E +   L+L +
Sbjct: 120 SINPPDTICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTI 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT D + MVE  A+++SE+ +L A+ FG        EA  +       EP+        
Sbjct: 180 AGTADYISMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVAD 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSEHSSWNEGEIVSVFED 297
               E       ++  +    +K  R  ++++LK ++    FS E  +  +G+I +  + 
Sbjct: 240 PAIAERVAPFMAEMSAALRDADKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKK 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ K +R ++++   R DGR  E +R +    G L R HGS LF RG TQA+ V TLG  
Sbjct: 300 LEKKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGML 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++   +   +M  YNF P  TGE  RMGAP RREIGHG LA RA+ PVLP   
Sbjct: 360 NEWQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSED 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI  PV+GIAMGL+K+GDD +ILS
Sbjct: 420 EFPYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT  GITA+QMD K  G+S +I+  AL+QA  GR +IL+ M +
Sbjct: 480 DIQGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++  R +L EF PR+E + IP D+IR+VIG GGKV+RGI E+TGA +NI++DGT+ IA+
Sbjct: 540 TIAAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 +AA+ MI  I   PEV + + G+VV + DFGAFV     +DGL+HIS+++  RV
Sbjct: 600 IEGPAGDAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
            K  DV+  GD + V++L+ D + GKI L  
Sbjct: 660 GKVEDVLNLGDIIKVEVLEVDPKTGKISLDR 690


>gi|149924682|ref|ZP_01913032.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
           SIR-1]
 gi|149814439|gb|EDM74030.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
           SIR-1]
          Length = 698

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/690 (45%), Positives = 431/690 (62%), Gaps = 8/690 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +V     +     +  ETGRIA+Q++  V+ T GET VL      R  KD   F PLTV
Sbjct: 1   MEVIREVAKVGDLEIGFETGRIAKQAN-TVIMTLGETAVLVAATMSREPKD-LPFMPLTV 58

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            ++    A GKIPGGY +RE RPT  EIL+ R+ DR IRPLF K Y+ +TQ++  V+ +D
Sbjct: 59  EFRSANAAAGKIPGGYFKREGRPTVEEILVCRLTDRPIRPLFPKGYRYDTQIVSQVLSND 118

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
           L++ P V++M  ASAALM+S  P+ GPV G +V  ++G+ V  P  D+  Q  L+L VS 
Sbjct: 119 LQNEPDVLAMTGASAALMISPAPWAGPVAGIRVARVDGELVAFPTFDQIQQADLNLIVSC 178

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           ++DA++MVE  A  +SE  ++DA++F   +  P+IEA  +L     K  +        + 
Sbjct: 179 SRDAIVMVEAGAEGISESDMIDALMFAKEQSLPLIEAQERLRARAGKPKMEWVDPVVDEA 238

Query: 241 EE-EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              ++    +  +  +  I  K+ R   I  +KK MV  F  E     + EI +    ++
Sbjct: 239 FRGQVMDKARSAMIEALAIRGKHDRHAAISAVKKSMVEAFGDE----RKDEISAAVGKLE 294

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             +VR   +++  R+DGR    +R +  +V   +R HGS+LF RG+TQAI   TLGT  D
Sbjct: 295 KTLVREATVNEGRRVDGRGLTDIRALHIEVHPFERPHGSALFQRGETQAITTTTLGTERD 354

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D++ G   N F++HYNF P   GE   M   SRRE GHG LA RA+ PV+P T  F
Sbjct: 355 AQRLDTIRGDVNNTFLLHYNFPPYCVGEARPMRGTSRREQGHGALAHRALTPVMPDTESF 414

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYTLR+VS+ TES+GSSSMA VCG  L+LMDAGVPI  PVAGIAMGL+++GD   +LSDI
Sbjct: 415 PYTLRVVSDTTESNGSSSMAAVCGGCLSLMDAGVPIKAPVAGIAMGLIQEGDKIAVLSDI 474

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFK  GT  GITA+QMD+KI G++ +I+  AL+QA+ GRLHIL  M + L
Sbjct: 475 LGDEDHLGDMDFKCCGTKDGITALQMDIKIHGLTRDILETALEQARAGRLHILEAMLEKL 534

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R  +  + PRVE + +  DQIR++IG GGKVIRGI EQTG  +NI+DDG V +AS+ 
Sbjct: 535 PEPREDISRYAPRVETVWVKIDQIRSIIGPGGKVIRGIQEQTGVVININDDGRVTMASAD 594

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           +  I  A+ +I  +T  PE  + Y G V +V+DFGAFV      DGLVHIS+L   RV +
Sbjct: 595 MDAIAKAKAIIEGLTFEPEPGQYYNGVVKRVVDFGAFVEIMPGTDGLVHISELENRRVDR 654

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            +DVV EGD V VK+++ DD+G+I+LS K 
Sbjct: 655 VTDVVSEGDDVVVKVVNIDDQGRIRLSRKQ 684


>gi|284929051|ref|YP_003421573.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
 gi|284809510|gb|ADB95215.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
          Length = 715

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/698 (41%), Positives = 439/698 (62%), Gaps = 20/698 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ GA+L   G+T VL T    +  ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKLGLLAPQAGGAILIQSGDTAVLVTATTSK-GREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E   LISR+IDR +RPLF   ++N+ Q+I   +  D E  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPERVTLISRLIDRPLRPLFPNWFRNDIQIIATTLSMDEEVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++ + +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V
Sbjct: 125 DVLAVTGASIAVIQAQIPFFGPMAAVRVGLVGDDFIINPTYREVEDGDLDLVVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM- 244
           +M+E  ANQL E  V++AI FG+   + +I A  ++ +      +  D    +++ E+  
Sbjct: 185 VMIEAGANQLPEQDVIEAIDFGYEAVRDLIGAQQEIMEELGISLVKADPPVKNEVLEKFI 244

Query: 245 ----SQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEH-----SSWNEGEI 291
               S+ IK+ L    +   K  R   +D++K+    ++++  S E      +  +   +
Sbjct: 245 SDQSSESIKKVLVQ--YNLGKAERDIALDEIKETTINEIITNLSEEDSIKIAAKEDPKAV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIV 350
            ++++ +  K++R+ ++D ++R+DGR  + VR I+  VG+L  R HG  LF RG TQ + 
Sbjct: 303 NNLYKGLTKKLMRSQIVDNEIRVDGRKLDEVRPITCDVGILPPRVHGCGLFNRGLTQVLS 362

Query: 351 VVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           + TLGT  D Q + D L       ++ HYNF P +  E   M +P RREIGHG LA RA+
Sbjct: 363 LATLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPYSVAETKPMRSPGRREIGHGALAERAL 422

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLPQ  +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+
Sbjct: 423 LPVLPQQEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIKE 482

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+S +++  A++QA   RL
Sbjct: 483 GEEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSMDVIAKAIEQALPARL 542

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   + + R +L  F PR+  M I P+ I  +IG GGK I+GI EQTG+K++I D
Sbjct: 543 HILEKMLSTIDKPRSELSTFAPRLLTMKIDPEMIGLIIGPGGKTIKGITEQTGSKIDISD 602

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG V IA+    + E A+ +I ++T      ++Y G+V +++  GAFV     ++G++HI
Sbjct: 603 DGMVTIAAIQAKKAEKAKSIIFNMTRKLNEGEVYLGRVTRLIPIGAFVEVLPGKEGMIHI 662

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           SQL+  RV K  D V  GD V VK+ + D++G++ L+ 
Sbjct: 663 SQLAERRVGKVEDEVAVGDEVVVKVREIDNKGRLNLTR 700


>gi|24378670|ref|NP_720625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus mutans
           UA159]
 gi|81452619|sp|Q8DWB2|PNP_STRMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24376532|gb|AAN57931.1|AE014867_3 polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           UA159]
          Length = 730

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/700 (41%), Positives = 439/700 (62%), Gaps = 8/700 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               E  +AG+ L +E G++A+Q++GA L  YG++ VL+  V  + +  G DFFPL +NY
Sbjct: 3   KQVFETIFAGKKLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTG-DFFPLQINY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKRYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDAD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           +S  + +M  +S AL +S +PF GP+ G QV Y++GQYV+NP  +E + SL +L V+GT+
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLELTVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLE 241
           +A+ MVE  A +LSED++L+A++ GH   + +I    ++     KE   ++  +  + L+
Sbjct: 182 EAINMVESGAKELSEDIMLEALLKGHEAVRELIAFQEEIIAAVGKEKAEVELLQVDADLQ 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  I EK  R    + +K+ + + +   ++   E      ++  + E
Sbjct: 242 AEIVGKYNADLQKAVQIEEKKAREIATEAVKEHVTAEYEERYAEHEEHDRIMRDVAEILE 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++   VR ++ + KVR DGR  + +R + A++  L + HGS LF RG TQA+ V+TL  
Sbjct: 302 QMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAP 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP  
Sbjct: 362 MGDTQIVDGLDEEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSL 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 422 EAFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 482 TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVIE 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           KV+   RL+L    P+++ + +  D+I+ VIG GG+ I  I+E+TG K++ID+DG + I 
Sbjct: 542 KVIPAPRLELAPTAPKIDTIKVDVDKIKIVIGKGGETIDKIIEETGVKIDIDEDGNIAIY 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    I   +E+I S+    +V +IY+ +VV++  FGAFVH     D LVHIS+++  R
Sbjct: 602 SSDQEAINRTKEIIASLVREAKVGEIYEAEVVRIEKFGAFVHLFDKTDALVHISEIAWTR 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             K  DV+  GD V VK++  DD+G+I  SMK +     +
Sbjct: 662 TNKVEDVLAVGDKVTVKVVKVDDKGRIDASMKALLPRPPR 701


>gi|57234211|ref|YP_181693.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides
           ethenogenes 195]
 gi|123759700|sp|Q3Z7V6|PNP_DEHE1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57224659|gb|AAW39716.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides
           ethenogenes 195]
          Length = 720

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/701 (41%), Positives = 450/701 (64%), Gaps = 6/701 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   ++ E    GR L +E+G++AR +D AV   Y +T +L T+   +  ++G DF PLT
Sbjct: 1   MITANSFERTIGGRKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           ++Y+ER YA GKIPGG++RRE RP+E  IL  R+ DR +RPL  K ++NE Q+II V+  
Sbjct: 61  IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+   +  +V AS  L +S +P+EGPV  ++V Y NG++VLNP   + +Q  +DL V 
Sbjct: 121 DKENDADIWGVVGASTVLTMSQIPYEGPVGASRVGYTNGEFVLNPTFAQLEQSQMDLVVV 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+ AV+M+E  + ++ ED+++ AI F H   + +I+   ++     KE + +   +  +
Sbjct: 181 STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++  ++  +K  +  +    +K +R   ++ L+ ++V   +  ++   EG+I++ ++  
Sbjct: 241 EVKAAVAAFVKGRVNEALSHQDKTLRENAVEALQSELVEALAETYA---EGDILAAYDKE 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R+ +L+K +R++GR  + +R + A+ G+L R HGS+LF RGDTQ + + TLG+ +
Sbjct: 298 IKKAIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQ 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D LS      FM+HYNF P +TGEV R G+P RREIGHG LA RA+ PVLP   +
Sbjct: 358 EAQQLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIILS 477
           FPYT+R+V+++  S GS+SM +VC SSL+LMDAGVP+ K VAGI++GL+  + D +  ++
Sbjct: 418 FPYTIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTIT 477

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFKVAGT  GITA+Q+DMK+ GIS +++  A+ QAK  R  IL  M K
Sbjct: 478 DIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDK 537

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L++ + +L  + PR+  ++I P +I +VIG GGK IR I+EQT   V+I++DGTV I +
Sbjct: 538 ALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGA 597

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +  A  + A ++I  +T   E   +Y G+V ++M FGAFV     ++G+VHIS+L+  RV
Sbjct: 598 TDEASAQKAIKIIEDLTKDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRV 657

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            K  DVVK GD + VK+ + D +G+I LS +V+      PI
Sbjct: 658 EKVEDVVKVGDEITVKVTEIDSQGRINLSRRVILNPNAVPI 698


>gi|332708787|ref|ZP_08428758.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
 gi|332352329|gb|EGJ31898.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
          Length = 716

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/697 (41%), Positives = 425/697 (60%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A QS G+V+   G+T VL T       ++G DF PL V+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQSGGSVMIQSGDTAVLVTATRAP-GREGIDFLPLVVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E  IL SR+IDR +RPLF    +++ Q++   +  D +  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPEKVILTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A++   +PF GP+   +V  +   +++NP   E + G LDL V+G+   V
Sbjct: 125 DVLAVTGASIAVLQGSIPFYGPMAAVRVGLLGDDFMINPTYKEIENGDLDLVVAGSPQGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-----EPIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L +         EP  +DS     +
Sbjct: 185 IMVEAGANQLPEQDIIEAIDFGYEAVQDLIKAQHDLLEELGIAIVIGEPPAVDSNLEEFI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY----FSSEHS-----SWNEGEI 291
               +  IK  L    F  +K  R   +D++K   V         +       + N   +
Sbjct: 245 RVRATDKIKGVLSQ--FDLDKNGRDVALDEIKDSAVKAEITQLKEDDPIRVAVNENSALV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIV 350
             +F+ +  K++RT ++++ VR+DGR  + VR +S Q  LL  R HGS+LF RG TQ + 
Sbjct: 303 DKLFKSLTKKLMRTQIVEEGVRVDGRKLDQVRPVSCQTSLLPQRVHGSALFNRGLTQVLS 362

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            VTLGT  D Q +D L+      ++ HYNF P + GEV  + +P RREIGHG LA RA+ 
Sbjct: 363 TVTLGTPGDAQTLDDLNPEDEKRYLHHYNFPPFSVGEVKPLRSPGRREIGHGALAERALV 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMD+GVPI+KPV+G AMGL+K+G
Sbjct: 423 PVLPPQHEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDSGVPITKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S + +  A++QAK  RLH
Sbjct: 483 DEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKITGLSMDTIAQAIEQAKPARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M  V+      +  F PR+  M I P+ I  VIG GGK I+GI EQTGAK++I+DD
Sbjct: 543 ILEKMLAVIDTPSTDMSPFAPRLLTMKIDPEFIGTVIGPGGKTIKGITEQTGAKIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV +++        A  +I+ +T       +Y G+V +++  GAFV     ++G++HIS
Sbjct: 603 GTVTVSAMDGDRATKAINIIQGLTRKLHEGDVYVGRVTRIIPIGAFVEILPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D +  GD V VK+ + D++G++ L+ 
Sbjct: 663 QLADYRVGKVEDELAVGDEVVVKIREIDNKGRLNLTR 699


>gi|170077686|ref|YP_001734324.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. PCC
           7002]
 gi|226704826|sp|B1XJU0|PNP_SYNP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169885355|gb|ACA99068.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. PCC
           7002]
          Length = 714

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/702 (42%), Positives = 426/702 (60%), Gaps = 20/702 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
              H   I + GR ++L+TG  A Q+ G+VL   G+T VL +       + G DF PL V
Sbjct: 1   MQEHIQSISFDGREIRLKTGLFAPQAGGSVLIESGDTAVLVSATTAP-GRQGIDFLPLLV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER YA G+IPGGYLRRE RP E   LISR+IDR +RPLF +  +++ Q++   +  D
Sbjct: 60  DYEERLYAAGRIPGGYLRREGRPPERATLISRLIDRPMRPLFPQWLRDDIQIVATTLSLD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            E  P V+++  AS A +L+GLPF GP+   +V  +   ++LNP   E   G LDL V+G
Sbjct: 120 EEVPPDVLAVTGASVATLLAGLPFYGPMAAVRVGLVGDDFILNPTYREMMNGDLDLVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSK 235
           T D V+MVE  ANQL E  +++AI F +   + +IEA   L K         EP   D +
Sbjct: 180 TPDGVIMVEAGANQLPEADMIEAIDFAYEAIQELIEAQRALMKELGVEMVSAEPPAKDEE 239

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEHS-----SW 286
               + +  +  IK+ L    F  +K  R   +D++K     + +     +       + 
Sbjct: 240 LEKFIGDRTTDKIKKVLSQ--FDLDKNGRDAALDEIKATEIIEAIEALPEDAPLRLKTTE 297

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGD 345
               I + F+ +  K++R+ +++  VR+DGR  + VR IS +  +L R  HGS LF RG 
Sbjct: 298 EPKLIDNTFKALTKKLMRSQIVEDGVRVDGRKLDQVRPISCRTAVLPRAVHGSGLFNRGL 357

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + + TLGT  D Q +D L  +    ++ HYNF P + GE   M +P RREIGHG LA
Sbjct: 358 TQVLSIATLGTPGDAQEMDDLHPSDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALA 417

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMG
Sbjct: 418 ERALLPVLPPKDEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMG 477

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           L+K+G +  IL+DI G ED LG MDFKVAGT  GITA+QMDMKI G++  ++  A++QA 
Sbjct: 478 LIKEGKEVRILTDIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLAVEVVAEAIKQAL 537

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             RLHIL +M+ V++E + +L    PR+  + I PD I  VIG GGK I+GI EQT AKV
Sbjct: 538 PARLHILEKMTDVIAEPK-ELSPAAPRLLTIKIDPDLIGMVIGPGGKTIKGITEQTRAKV 596

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I DDGTV IASS     E A+ +I ++T       +Y G+V +++  GAFV     ++G
Sbjct: 597 DIADDGTVTIASSESENAEKAKRLIVNMTRKLNEGDVYFGKVTRIIQIGAFVEIMPGKEG 656

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           ++HISQL+  RV K  D V  GD V VK+ + D++G+I L+ 
Sbjct: 657 MIHISQLAEGRVGKVEDEVAVGDEVVVKVREIDNKGRINLTR 698


>gi|89898059|ref|YP_515169.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila felis
           Fe/C-56]
 gi|123483690|sp|Q255L4|PNP_CHLFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89331431|dbj|BAE81024.1| polyribonucleotide nucleotidyltransferase [Chlamydophila felis
           Fe/C-56]
          Length = 694

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/690 (42%), Positives = 420/690 (60%), Gaps = 4/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V +E  G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V
Sbjct: 3   FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCAA-TLEEPVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  ++GK  GG+++RE RPTE EIL SR+IDRS+RP        + Q++  V  +D
Sbjct: 61  DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
             + P  +++   SAAL +S +P    V G +V +IN  +V+NP   E     ++L ++G
Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQINIVAGVRVGFINNTWVVNPTKAEMDVSRMELVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSK 239
           T+ A+LM+E   +  +E+ V++AI FGH     + +AI    K   KE           +
Sbjct: 181 TEKAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKAIEDWQKQIGKEKNTSAVVPLPEQ 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           ++  ++ +++        I EK         L+  +V     E+  +    I + F+  +
Sbjct: 241 VQTAVNTLVEGKFSDLLQIKEKKAFEAASKQLENDIVEKLQEENEIFTPLNIKTAFKQAK 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +  +R+++  + +R DGR   T+R IS     L RTHGS LF RG+TQ + V TLG+   
Sbjct: 301 SDYMRSLIRKQGLRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAM 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP  A+F
Sbjct: 361 AQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDPAKF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D D   ILSDI
Sbjct: 421 PYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHVTILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG EDHLG MDFKVAG   GITA QMD+K+ GI+  IM  AL QAK GR +IL  M   L
Sbjct: 481 SGLEDHLGDMDFKVAGNAEGITAFQMDIKVEGITPEIMQAALAQAKSGRQNILETMKATL 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D G V I++SS
Sbjct: 541 ASPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSGLVSISASS 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              IE A+ +I  +    EV KIY+G+V  ++ FGAFV     ++GL HIS+ S +R+  
Sbjct: 601 PQAIEKAKSIIEGLVGEVEVGKIYEGRVTSIVPFGAFVEILPGKEGLCHISEFSKQRIEN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D VK+GD + VKLL  +++G+ KLS K 
Sbjct: 661 VGDFVKQGDILPVKLLSINEKGQYKLSHKA 690


>gi|187611320|sp|Q7UR95|PNP_RHOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 753

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/699 (40%), Positives = 427/699 (61%), Gaps = 7/699 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              VE +     L  ETG IA+Q+ G+VL  YGETVVL       + + G DFFPL  +Y
Sbjct: 5   KVRVERKIGDSVLSFETGHIAKQAAGSVLVQYGETVVLVAA-ASGTPRPGIDFFPLMCDY 63

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER  A GK PGG+L+RE RP+  EIL SR++DR IRPL+   YK+E QV   V+  DL+
Sbjct: 64  RERLAAAGKFPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQ 123

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           +   V++M+  + AL +S LPF+GP+   +V  ++G+ V  P  D+ +Q  LD+ VSG++
Sbjct: 124 NDGDVLAMIGGATALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           D V M+E  AN++ ED +++AI F H+  + VI+   +  K    E     S +   L +
Sbjct: 184 DMVAMIEGFANEMPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQ 243

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQ 299
            ++     D + +     K  R + +  ++ + ++    + ++ +        SV+ D++
Sbjct: 244 RLTDAYYSDFKTAQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLE 303

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            KVVR ++L    R DGRD  ++R I  +  LL R HGS+LF RG+TQA++ + LGT  D
Sbjct: 304 EKVVRDLILA-GTRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRD 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ VD L       FM+ YNF   + GE   +  P RREIGHG LA R++ PVLP    F
Sbjct: 363 EQRVDGLQDEYSKKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSD 478
           PYT+R++S+ITES+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++D
Sbjct: 423 PYTIRVISDITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITD 482

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFK+AGT +GIT +Q+D+K+ G++ +I+   L+Q++  R+ IL +M   
Sbjct: 483 ILGTEDHFGDMDFKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTT 542

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +   R ++    PR+    I PD+I  +IG GGK IRGI E TGA + +DD+GTV +ASS
Sbjct: 543 IPRPRREISPTAPRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASS 602

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    + A   + + T   ++ KIY G V  + +FGAFV     RDGLVHIS++S   ++
Sbjct: 603 NKESAQEAMRQVEACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYIS 662

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
               V+  GD + V ++D D+  ++KLS +   +  G+ 
Sbjct: 663 SLDQVIAVGDAMKVLVIDVDEHDRVKLSRRKALEELGEE 701


>gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ATCC 17978]
          Length = 662

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/643 (51%), Positives = 448/643 (69%), Gaps = 3/643 (0%)

Query: 53  GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ 112
           GQDFFPLTVNYQE+ YA G+IPGGY +RE R +E E LISR+IDR IRPLF + Y NE Q
Sbjct: 19  GQDFFPLTVNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQ 78

Query: 113 VIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-Q 171
           V   V+  D      + +M+  SAAL ++G PF GP+  A+V  ING+YVLNP  ++  Q
Sbjct: 79  VTATVVSSDKTMEADIAAMLGTSAALAIAGTPFRGPIGAARVGLINGEYVLNPNFEQMAQ 138

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
             LDL V+GT+ AVLMVE EA +LSED +L A++FGH+E +  I+AI++ A     +P  
Sbjct: 139 SDLDLVVAGTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAAAGAKPSD 198

Query: 232 IDSKDF-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEG 289
             +     +L  ++ +  +  +  +  I  K  R   +D L  + V+ F  E        
Sbjct: 199 WVAPAHNEELRAKLKEAFEAKISEAYTIAVKQDRYAALDALHAEAVAQFVPEEDVDGIAD 258

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           E+  +FED++ + VR  +L  K R+DGRD++TVR +  QVG+L+R HGS+LF RG+TQA+
Sbjct: 259 EVDYLFEDLKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQAL 318

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V  TLG   D   VD+L+GT+ ++FM+HYNF   + GE  R   P RREIGHGRLARR +
Sbjct: 319 VTTTLGNTRDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGV 378

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             VLP   +FPY +RIVS+ITES+GSSSMA+VCG+SL+LMDAGVP+  PVAGIAMGLVK+
Sbjct: 379 QAVLPAADRFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKE 438

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ F +LSDI GDEDHLG MDFKVAG+ +GITA+QMD+KI GI+E IM +AL QA  GR+
Sbjct: 439 GERFAVLSDILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRM 498

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HILNEM+KV+S +R ++    P  E++ I PD+IR+VIG GG  IR I E+T A ++I+D
Sbjct: 499 HILNEMNKVISRARPEISMHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIED 558

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +GTV++   + A  +AA   I++IT   E  KIY G+V+++++FGAFV+     DGL+HI
Sbjct: 559 NGTVRVFGETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHI 618

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQ+S ER+A  +DV+KEG  V V++ D D+RG+IKL+MK ++Q
Sbjct: 619 SQISNERIANVTDVLKEGQEVKVQVQDVDNRGRIKLTMKDIEQ 661



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 141/360 (39%), Gaps = 41/360 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-------DGQDFFPLTVNYQER 66
           R L ++ G + R + G+ L T GET  L T     +          G       ++Y   
Sbjct: 292 RALDVQVGVLER-AHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTDNFMLHYNFP 350

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+       RES P   EI   R+  R ++ +      +    +++ ++ + +  S
Sbjct: 351 AYSVGETG-----RESGPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVSDITESNGSS 405

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY--VLNPRLDEDQ--GSLDLFVS 179
           S  + S+  AS +LM +G+P + PV G  +  +  G+   VL+  L ++   G +D  V+
Sbjct: 406 S--MASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLSDILGDEDHLGDMDFKVA 463

Query: 180 GTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP--IVIDSK 235
           G+ + +  ++++     ++E+++  A+         ++  ++K+      E        +
Sbjct: 464 GSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNKVISRARPEISMHAPTFE 523

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE--GEIVS 293
             +   +++  +I +                 I  + ++  +    E +      GE  +
Sbjct: 524 VITINPDKIRDVIGKG-------------GATIRQITEETKAAIDIEDNGTVRVFGETKA 570

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +   AK+       +  ++       + +  A V ++  T G     +   + I  VT
Sbjct: 571 AAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERIANVT 630


>gi|257063808|ref|YP_003143480.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Slackia heliotrinireducens DSM 20476]
 gi|256791461|gb|ACV22131.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Slackia heliotrinireducens DSM 20476]
          Length = 743

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/691 (42%), Positives = 420/691 (60%), Gaps = 6/691 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  ++  E  G+    ETG +A+Q+ GAVL   GET VL T V     KD  DFFPLTV
Sbjct: 1   MEKVSLAFELYGKEYAFETGELAKQATGAVLVKQGETTVLVTAVISAQEKD-YDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           ++ E+ YAVG+IPGGYL+RE + ++   L +RMIDR IRP F+  +K E  V+      D
Sbjct: 60  DFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAID 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFV 178
            ++ P  + +  ASAALM+   PF+GP    ++       ++++NP  +E +   L+L +
Sbjct: 120 GQNPPDCICVGGASAALMIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTI 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT+D + MVE  AN+++E+ +L A+ FG        E  ++   M A EP         
Sbjct: 180 AGTRDYISMVEAGANEVTEEDMLAAMNFGQEAIAAFCEKQAEFLAMVAPEPREWPIHVPD 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFED 297
               E      +++  +    +K  R  ++++LK  + +  FS E  +    +I +  + 
Sbjct: 240 ASIAERVDAHFDEMSAALKDADKQSRIAKVEELKAAIKANDFSEEEQAAWGSDIAAALKS 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R ++++   R DGR ++ +R +  + G L R HGS LF RG TQA+ V TLG  
Sbjct: 300 LEKHAMRRMVIETGERADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++       +M  YNF P  TGEV RMGAP RRE+GHG LA RAI PVLP   
Sbjct: 360 NEAQRLDTIDPATGKRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPSED 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSEI ES+GSSSMA+ CGS LALMDAGVPI  PV+GIAMGL+K+ D  +ILS
Sbjct: 420 EFPYAIRVVSEILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDGVVILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT +GITA+QMD K  G+S  I+  ALQQAK GR HILN M  
Sbjct: 480 DIQGLEDFLGDMDFKVTGTANGITALQMDNKARGLSTEILGRALQQAKEGRAHILNAMLA 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R +L +  PR+E + IP D+IR VIG GG+ IRGI + TGA + I +DGTV IAS
Sbjct: 540 EIPGPREELRDTAPRIETIHIPVDKIREVIGKGGETIRGIQDSTGASIEIQEDGTVHIAS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                  AA+  + +I   PEV ++Y+G VV +  FGAFV    ++DGL+HIS+++  RV
Sbjct: 600 VDQEAGRAAKAAVEAIVKEPEVGEVYEGTVVGIQTFGAFVKLTPSKDGLLHISRMANGRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
           +K  DV+  GDTV V++++ D + GK+ L  
Sbjct: 660 SKVEDVLNMGDTVKVQVIEIDPKSGKVSLDR 690


>gi|110803188|ref|YP_698967.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           SM101]
 gi|123146059|sp|Q0SSE0|PNP_CLOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110683689|gb|ABG87059.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           SM101]
          Length = 702

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/697 (41%), Positives = 443/697 (63%), Gaps = 5/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V +  K   ++EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEIEE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q +V
Sbjct: 243 AVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG   + Q 
Sbjct: 302 VRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAISEIQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+FPYT
Sbjct: 362 LDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  +  +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ + + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S+  
Sbjct: 542 APREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAES 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 EGVKEAVKIIEGLTKEVKSGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            D+V  GD + VK+ + D +G+I LS K   +   + 
Sbjct: 662 EDIVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEE 698


>gi|313905717|ref|ZP_07839077.1| polyribonucleotide nucleotidyltransferase [Eubacterium
           cellulosolvens 6]
 gi|313469424|gb|EFR64766.1| polyribonucleotide nucleotidyltransferase [Eubacterium
           cellulosolvens 6]
          Length = 715

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/697 (39%), Positives = 413/697 (59%), Gaps = 15/697 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  T  +E AGR L ++ GR+ +Q++G     YG+T +L T    +  ++G DFFPL+V 
Sbjct: 14  NYKTYSMELAGRTLSVDIGRVGKQANGCAFMHYGDTTLLCTATASKQPREGVDFFPLSVE 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++E+ YAVGK PGG+ +RE + +E+ +L SR+IDR +RPLF K Y+N+  +   VM  D 
Sbjct: 74  FEEKMYAVGKFPGGFNKREGKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
              P VV+M+ +S A  +S +PF+GP    Q+  I+G++V+NP  ++  + +L L V+ T
Sbjct: 134 ACDPEVVAMLGSSLATAISDIPFDGPCAATQIGMIDGEFVINPGYEQKAESTLALTVAST 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           ++ V+M+E  A ++ E  +++AI       K VI    ++   C KE    +S     + 
Sbjct: 194 REKVIMIEAGAEEIPEAKMIEAIYLADETNKKVIAFFDQIVAECGKEKHSYES---CAIP 250

Query: 242 EEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           EE+   IKE     ++ V+ F  EK VR   I  + +K+   F+   +      +     
Sbjct: 251 EELFAAIKEIVPPAEMEVAVFTDEKQVREANIAAVTEKLQEAFA--DNEEWLAILPEAVY 308

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
             Q K VR ++L  + R DGR    +R ++A+V ++   HGS++F RG TQ   V+TL  
Sbjct: 309 QYQKKTVRKMILKDQKRPDGRAVRQIRPLAAEVDVIPHVHGSAMFTRGQTQICDVITLAP 368

Query: 357 REDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             + Q V+ L     +  +M  YNF   + GE      P RREIGHG LA RA+ PVLP 
Sbjct: 369 LSEAQKVEGLDPFITKKRYMHQYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPT 428

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
             +FPY +R VSE  ES+GS+S A+VC SS+ALM AGVPI KPVAGI+ GLV     DD+
Sbjct: 429 EEEFPYAIRAVSETFESNGSTSQASVCASSMALMAAGVPIKKPVAGISCGLVTGDTDDDY 488

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+ + K  R +IL 
Sbjct: 489 LVLTDIQGLEDFFGDMDFKVAGTHDGITAIQMDIKIHGLTRQIVEEAISRCKDAREYILT 548

Query: 534 E-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           E M K ++  R  + E+ P++E M I PD+I  V+G  GK I  I+ +TG K++IDDDGT
Sbjct: 549 EVMEKAIAAPRESVNEYAPKIESMKIDPDKIGEVVGKQGKTINEIIARTGVKIDIDDDGT 608

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V +  +  A+++ A + I  IT   E  ++ KG VV + +FGAFV F   ++G+VHIS++
Sbjct: 609 VSVCGTDRAKMDEAEKYIEIITMNFEEGQVLKGTVVSIKEFGAFVEFAPGKEGMVHISKI 668

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + ER+    D++  GD V V  L  D  G++  S+K 
Sbjct: 669 AKERINHVEDILTLGDVVKVVCLGKDRMGRLSFSIKD 705


>gi|169342748|ref|ZP_02863788.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           C str. JGS1495]
 gi|169299254|gb|EDS81324.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           C str. JGS1495]
          Length = 702

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/697 (41%), Positives = 444/697 (63%), Gaps = 5/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 IPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V +  K   ++EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEIEE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +  S  I ++  R   +D++K K+   F  ++   N  +I     D+Q +V
Sbjct: 243 AVREFAFDMISESMHITDRDERNSAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+FPYT
Sbjct: 362 LDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  +  +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ + + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S+  
Sbjct: 542 APREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAES 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 EGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            DVV  GD + VK+ + D +G+I LS K   +   + 
Sbjct: 662 EDVVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEE 698


>gi|241116894|ref|XP_002401660.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
 gi|215493204|gb|EEC02845.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
          Length = 670

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/670 (47%), Positives = 466/670 (69%), Gaps = 3/670 (0%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G+ L+L TG+IARQ+DGAV    G +V+L T V  +  K+G  FFPLT+NY+E  YA G
Sbjct: 1   DGKVLELSTGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAAG 60

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+ +RE + ++ E+L+SR+IDR IRPLF   + NET V  +V+ +D E+   ++++
Sbjct: 61  KIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPETPVDILAI 120

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVEL 190
           + ASAAL LS  P+   V  ++V  ING++VLNP L+  + S LDL V+GT D+V+MVE 
Sbjct: 121 IGASAALSLSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVAGTSDSVMMVES 180

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           EA+ LSE+ +L+A+ FG    +PVI+ I +LA+   K  + +     + L++E+ ++  +
Sbjct: 181 EAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQDLYPASLKKEIEKLFVK 240

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQAKVVRTVML 308
           +++    I  K  R   +D + +K++++F S  E+  ++  +I S  + I++ ++R  +L
Sbjct: 241 EIKQVFVIKSKQERSTNLDLIPEKVLTHFVSDIENKKYSNYQIESALKSIESDILRNEIL 300

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +K  R+DGR +  +R I+ ++GLL   HGS+LF RG+TQ++V  T GT  DEQ VDSL G
Sbjct: 301 EKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEG 360

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
             +  FM++Y F P +  EV  M APSRRE+GHG+LA RAI+P+LP   QFPY++R+V+E
Sbjct: 361 EYKERFMLNYIFPPYSVNEVMPMKAPSRREVGHGKLAWRAINPILPNKVQFPYSIRVVAE 420

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
            TES+GSSSMATVC SSLALM AGVPI  PVAGIAMGL+K+G  F +LSDI GDED+ G 
Sbjct: 421 TTESNGSSSMATVCSSSLALMYAGVPIKAPVAGIAMGLIKEGKKFAVLSDILGDEDYFGD 480

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKVAGT  GITA+QMD+KI G+   IM +AL+QA+ GRLHIL +M+KV+S+   +L +
Sbjct: 481 MDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKVISKPNSELSK 540

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             P    + I  D+IR++IG GGKVI+ I E +GAK++I DDG+V + +S   +++ A +
Sbjct: 541 NAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYASDRDKLKVALD 600

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            I++I   PE+ +I+ G V+KV+D GAF+++ G +DG VHIS++S ER+   S V+K+GD
Sbjct: 601 KIKAIAVEPEIGEIFNGTVMKVLDSGAFINYLGNKDGFVHISEISEERIETVSSVLKQGD 660

Query: 669 TVWVKLLDFD 678
            V VKL+ FD
Sbjct: 661 IVKVKLIGFD 670


>gi|182626381|ref|ZP_02954135.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           D str. JGS1721]
 gi|177908332|gb|EDT70880.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           D str. JGS1721]
          Length = 702

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/697 (41%), Positives = 443/697 (63%), Gaps = 5/697 (0%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           HT E   AGRP+K+E G++   SD A+L +YG+TV+L  V      ++G DFFPL+V Y+
Sbjct: 3   HTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+++RE +P+E  IL  R IDR +RPLF K Y+N+ QV+  V+  + ++
Sbjct: 63  ERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P ++++ AAS AL LS +PF  PV   QV  I  +++LNP   E ++ SL L V  T++
Sbjct: 123 LPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCATKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEE 242
            V+M+E   +++ ED +++AI FG ++C+ +I+   +   M  KE  V +  K   ++EE
Sbjct: 183 RVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEIEE 242

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
            + +   + +  S  I  +  R   +D++K K+   F  ++   N  +I     D+Q +V
Sbjct: 243 AVREFAFDMISESMHITNRDERNSAMDEVKAKINEEFEEKYPD-NMSDIGEAVYDMQKEV 301

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L +  R DGR  + VR+I  +VGLL RTHG+ LF RG TQ + V TLG+  + Q 
Sbjct: 302 VRHMLLKEGKRPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQI 361

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D +   +   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P  A+FPYT
Sbjct: 362 LDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAEFPYT 421

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDIS 480
           +R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  +  +L+DI 
Sbjct: 422 IRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDIQ 481

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFKVAGT+ GIT++Q+D KI G+SE ++  A+  A++ RL IL+++ + + 
Sbjct: 482 GLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECIP 541

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             R ++ ++ P+   + I P++IR+VIG GGKVI  I+  TG K++I +DG V ++S+  
Sbjct: 542 APREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAES 601

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++ A ++I  +T   +  +IY G+V K+  FGAFV     ++GLVHIS+L  +RV K 
Sbjct: 602 EGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEKV 661

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            DVV  GD + VK+ + D +G+I LS K   +   + 
Sbjct: 662 EDVVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEE 698


>gi|154485033|ref|ZP_02027481.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
           27560]
 gi|149733986|gb|EDM50105.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
           27560]
          Length = 688

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/693 (38%), Positives = 410/693 (59%), Gaps = 15/693 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++ GR+A+Q++GA    YG+T VL+T       ++G DFFPL+V ++E+ Y
Sbjct: 1   MELAGRTLTVDVGRVAKQANGAAFMHYGDTTVLSTATASDKPREGVDFFPLSVEFEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGKIPGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   VM  D E  P +
Sbjct: 61  SVGKIPGGFNKREGKASENSVLTARVIDRPMRPLFPKDYRNDVSLNNLVMSVDPECRPEL 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLM 187
           V+M+ ++ +  +S +PF+GP    QV  ++G++V+NP     D G L L V+ T+  V+M
Sbjct: 121 VAMLGSAISTCISDIPFDGPCAMTQVGMVDGEFVVNPSQAVWDNGDLQLTVASTKQKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
           +E  AN + E  +++AI   H+  + +IE I K+     KE    +S     + EE+   
Sbjct: 181 IEAGANIIPEAKMIEAIYMAHDINQTIIEFIEKIVAEVGKEKHTYES---CAIPEELFAA 237

Query: 248 IKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           IKE     ++ V+ F  +K  R   I ++ +K+   F+   +      +       Q K 
Sbjct: 238 IKEIVPPAEMEVAVFTDDKQTREANIKEITEKLEEAFA--DNEEWLAVLGEAIYQYQKKT 295

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR ++L    R DGR  + +R ++A+V ++ R HGS++F RG TQ   V TL    + Q 
Sbjct: 296 VRKMILKDHKRPDGRALDQIRPLAAEVDIVPRVHGSAMFTRGQTQICNVCTLAPLSEAQK 355

Query: 363 VDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +D L    +   +M HYNF   + GE      P RREIGHG LA +A+ PVLP   +FPY
Sbjct: 356 IDGLDENVKTKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAEKALMPVLPSEEEFPY 415

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
            +R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DD+++L+DI
Sbjct: 416 AIRTVSETFESNGSTSMASTCSSCMSLMAAGVPIKSMVAGISCGLVTGETDDDYVLLTDI 475

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKV 538
            G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A+ + +  RL I++  M   
Sbjct: 476 QGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRDIVEGAIARTREARLFIMDTCMKPA 535

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++E R ++  + P++E + I PD+I +V+G  GKVI  I+E+TG K++I D+G V +   
Sbjct: 536 IAEPRKEVNAYAPKIETIQINPDKIGDVVGKSGKVINAIIEETGVKIDISDEGMVSVCGV 595

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               I+ A + I++I    E   I +G VV + +FGAF+ F   ++G+VHIS+++ ERV 
Sbjct: 596 DKDMIDKALKYIKTIVTDFEEGMILEGTVVSIKEFGAFIEFAPGKEGMVHISKIAKERVE 655

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
              D +  GD V  K L  D  G+I  S+K   
Sbjct: 656 HVEDYLTLGDKVKCKCLGKDKMGRISFSIKDAQ 688


>gi|254992778|ref|ZP_05274968.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J2-064]
          Length = 658

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/636 (44%), Positives = 411/636 (64%), Gaps = 5/636 (0%)

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   D + SP
Sbjct: 1   MYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSP 60

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+GT DA+
Sbjct: 61  EMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAI 120

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEM 244
            MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      +LE E+
Sbjct: 121 NMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEV 180

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAK 301
               +  ++ +    EK  R   I+++K++++  + +   E+ +   GE+  + E I+  
Sbjct: 181 KAASEGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKD 240

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL    + Q
Sbjct: 241 EMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQ 300

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P   +FPY
Sbjct: 301 IIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPY 360

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ ILSDI G
Sbjct: 361 TIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQG 420

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  ++  +S 
Sbjct: 421 MEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISA 480

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV IAS   A
Sbjct: 481 PREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQA 540

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ ERV K  
Sbjct: 541 MNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVE 600

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 601 DILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 636


>gi|327537258|gb|EGF23997.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
           WH47]
          Length = 819

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/695 (40%), Positives = 426/695 (61%), Gaps = 7/695 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +     L  ETG IA+Q+ G+VL  YGETVVL       + + G DFFPL  +Y+ER 
Sbjct: 74  ERKIGDSVLSFETGHIAKQAAGSVLVQYGETVVLVAA-ASGTPRPGIDFFPLMCDYRERL 132

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A GK PGG+L+RE RP+  EIL SR++DR IRPL+   YK+E QV   V+  DL++   
Sbjct: 133 AAAGKFPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGD 192

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V++M+  + AL +S LPF+GP+   +V  ++G+ V  P  D+ +Q  LD+ VSG++D V 
Sbjct: 193 VLAMIGGATALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVA 252

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ ED +++AI F H+  + VI+   +  K    E     S +   L + ++ 
Sbjct: 253 MIEGFANEMPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTD 312

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
               D + +     K  R + +  ++ + ++    + ++ +        SV+ D++ KVV
Sbjct: 313 AYYSDFKTAQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVV 372

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L    R DGRD  ++R I  +  LL R HGS+LF RG+TQA++ + LGT  DEQ V
Sbjct: 373 RDLILA-GTRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRV 431

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L       FM+ YNF   + GE   +  P RREIGHG LA R++ PVLP    FPYT+
Sbjct: 432 DGLQDEYSKKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTI 491

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGD 482
           R++S+ITES+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G 
Sbjct: 492 RVISDITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGT 551

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFK+AGT +GIT +Q+D+K+ G++ +I+   L+Q++  R+ IL +M   +   
Sbjct: 552 EDHFGDMDFKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRP 611

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++    PR+    I PD+I  +IG GGK IRGI E TGA + +DD+GTV +ASS+   
Sbjct: 612 RREISPTAPRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKES 671

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A   + + T   ++ KIY G V  + +FGAFV     RDGLVHIS++S   ++    
Sbjct: 672 AQEAMRQVEACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQ 731

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+  GD + V ++D D+  ++KLS +   +  G+ 
Sbjct: 732 VIAVGDAMKVLVIDVDEHDRVKLSRRKALEELGEE 766


>gi|32473910|ref|NP_866904.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
           SH 1]
 gi|32444447|emb|CAD74445.1| polyribonucleotide nucleotidyltransferase [Rhodopirellula baltica
           SH 1]
          Length = 818

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/695 (40%), Positives = 426/695 (61%), Gaps = 7/695 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E +     L  ETG IA+Q+ G+VL  YGETVVL       + + G DFFPL  +Y+ER 
Sbjct: 74  ERKIGDSVLSFETGHIAKQAAGSVLVQYGETVVLVAA-ASGTPRPGIDFFPLMCDYRERL 132

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A GK PGG+L+RE RP+  EIL SR++DR IRPL+   YK+E QV   V+  DL++   
Sbjct: 133 AAAGKFPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGD 192

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V++M+  + AL +S LPF+GP+   +V  ++G+ V  P  D+ +Q  LD+ VSG++D V 
Sbjct: 193 VLAMIGGATALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVA 252

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           M+E  AN++ ED +++AI F H+  + VI+   +  K    E     S +   L + ++ 
Sbjct: 253 MIEGFANEMPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPEDDGLLQRLTD 312

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFEDIQAKVV 303
               D + +     K  R + +  ++ + ++    + ++ +        SV+ D++ KVV
Sbjct: 313 AYYSDFKTAQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVV 372

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L    R DGRD  ++R I  +  LL R HGS+LF RG+TQA++ + LGT  DEQ V
Sbjct: 373 RDLILA-GTRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRV 431

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D L       FM+ YNF   + GE   +  P RREIGHG LA R++ PVLP    FPYT+
Sbjct: 432 DGLQDEYSKKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTI 491

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGD 482
           R++S+ITES+GSSSMA+VCG++L LM +GVPIS PVAGI++GLV+DG D++ +++DI G 
Sbjct: 492 RVISDITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGT 551

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFK+AGT +GIT +Q+D+K+ G++ +I+   L+Q++  R+ IL +M   +   
Sbjct: 552 EDHFGDMDFKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRP 611

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R ++    PR+    I PD+I  +IG GGK IRGI E TGA + +DD+GTV +ASS+   
Sbjct: 612 RREISPTAPRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKES 671

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + A   + + T   ++ KIY G V  + +FGAFV     RDGLVHIS++S   ++    
Sbjct: 672 AQEAMRQVEACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQ 731

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V+  GD + V ++D D+  ++KLS +   +  G+ 
Sbjct: 732 VIAVGDAMKVLVIDVDEHDRVKLSRRKALEELGEE 766


>gi|163814157|ref|ZP_02205549.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
 gi|158450606|gb|EDP27601.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
          Length = 731

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/700 (40%), Positives = 414/700 (59%), Gaps = 16/700 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + E AGR L ++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V 
Sbjct: 37  EFKRYQKEIAGRMLTVDIGRVAAQANGAAFIKYGDTTVLSTCTASEKPRDGIDFFPLSVE 96

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ Y+VGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   VM  D 
Sbjct: 97  YEEKLYSVGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDP 156

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E  P +V+M+ +S A  +S +PF+GP    QV  I+G++++NP   + D+G L L V+ T
Sbjct: 157 ECRPELVAMLGSSIATCISDVPFDGPCAMTQVGLIDGEFIINPTQKQWDEGDLKLTVAST 216

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKD 236
              V+M+E  AN + E  +++AI   H+  + +I  I+++     K         +  + 
Sbjct: 217 SQKVIMIEAGANIVPEAKMIEAIYMAHDINQDIIAFINEIVAEVGKPKHSYVSCAVPEEL 276

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           F+ ++E +     ED   + F  EK VR + I  + +K+   F+   +      +     
Sbjct: 277 FAAIKEIVPPAAMED---AVFSDEKQVREENIRQITEKLEEAFA--DNEEWLAVLPDAIY 331

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
             Q K VR ++L    R DGR    +R ++A+V ++ R HGS++F RG TQ   V TL  
Sbjct: 332 QYQKKTVRKMILKDHKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAP 391

Query: 357 REDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             + Q VD L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP 
Sbjct: 392 LSEIQRVDGLDENVTTKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAERALLPVLPS 451

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
             +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DD+
Sbjct: 452 EEEFPYAIRTVSETFESNGSTSMASTCSSCMSLMAAGVPIKAMVAGISCGLVTGDTDDDY 511

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I+L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL I+ 
Sbjct: 512 IVLTDIQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARLFIME 571

Query: 534 E-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M   ++  R  + EF P+++ + I P++I  VIG  GK I  I+E+TG K++IDD+G 
Sbjct: 572 TCMKPAIAAPRPTVNEFAPKIKQIKIDPEKIGEVIGQRGKTINTIIEETGVKIDIDDEGR 631

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I     A ++ A EMI  I +  EV K Y G+VVKV+D GA V     +DGL+HIS+L
Sbjct: 632 ISICGVEQAGMDKAIEMINMIVEPLEVGKNYHGKVVKVIDCGAIVSLAPNKDGLIHISKL 691

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691
           S +RVAK  DVV  GD V VK++  D+R G+I LS+K V 
Sbjct: 692 SDKRVAKVEDVVNVGDEVDVKVIKIDERAGRISLSLKDVQ 731


>gi|167745605|ref|ZP_02417732.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
 gi|167654917|gb|EDR99046.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
          Length = 713

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/688 (42%), Positives = 426/688 (61%), Gaps = 9/688 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               +E AGR L +E GR+A Q++GA    YG+TVVL+T       +DG DFFPL+V Y+
Sbjct: 21  KKFSMELAGRTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYE 80

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+L+RE+RP+EN IL  R+IDR +RPLF K Y+N+  +   VM  D + 
Sbjct: 81  EKQYAVGKIPGGFLKREARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPDC 140

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ ++ A  +S +PF+GP     V  I+G++++NP   + +   + L V+ T++
Sbjct: 141 SPELTAMLGSAIATCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSEMSLTVASTRE 200

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LE 241
            V+M+E  AN++ ED++++AI   H   K +I  I  +   C KE    +  +  +   E
Sbjct: 201 KVIMIEAGANEVPEDIMIEAIFKAHEVNKEIIAFIDTIVAECGKEKHEYEHHEIDQEMYE 260

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + +S +  E +  + F  EK VR + I  ++ K+   ++   +     +I       Q K
Sbjct: 261 DMVSFITPEAMEEAVFTDEKQVREENIRGIEDKLAERYA--DNEEWLSQIGEAVYTFQKK 318

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L  K R DGRD   +R ++A+V  L R HGS+LF RG TQ + V TLG+  + Q
Sbjct: 319 TVRKMILKDKKRPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQ 378

Query: 362 YVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D +        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +FP
Sbjct: 379 RLDGMDQDETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPTEEEFP 438

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSEI ES+GS+S  ++C SSL+LM AGVP+  PVAGI++GLV     DD++IL+D
Sbjct: 439 YAIRTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGDSDDDYLILTD 498

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMSK 537
           I G ED  G MDFKVAGTD GITA+QMD+KI G+++ I+  A+ + K  R +IL + M+ 
Sbjct: 499 IQGLEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVMNP 558

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ E+R  +G++ P++    I P++I  VIG  GK I  I+++TG K++ID+ G V I S
Sbjct: 559 VIGEARDHVGKYAPKISQYTIDPEKISEVIGKQGKTINAIIDETGVKIDIDESGRVDILS 618

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                I+ A  +I+SI +   V  IY+G+VV++M FGAFV     +DGL+HIS+L+ +RV
Sbjct: 619 EDQEMIDKAIGIIKSIVEPLNVGDIYEGEVVRIMQFGAFVQVSPNKDGLIHISKLAKDRV 678

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            K  DVV  GD V VK+L+ D  G+I L
Sbjct: 679 EKVEDVVNIGDRVAVKVLEIDKMGRINL 706


>gi|53715606|ref|YP_101598.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           YCH46]
 gi|60683550|ref|YP_213694.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           NCTC 9343]
 gi|253566582|ref|ZP_04844035.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
 gi|265767451|ref|ZP_06095117.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
 gi|81313402|sp|Q5L7Z7|PNP_BACFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81381032|sp|Q64N73|PNP_BACFR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52218471|dbj|BAD51064.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           YCH46]
 gi|60494984|emb|CAH09802.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
           fragilis NCTC 9343]
 gi|251944754|gb|EES85229.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
 gi|263252756|gb|EEZ24268.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
 gi|301165064|emb|CBW24632.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
           fragilis 638R]
          Length = 708

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/711 (40%), Positives = 438/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP  D+ +Q  +D+ V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQADMDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +M  K   V       
Sbjct: 181 AATYENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK--TVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +EE+ + + +      +         K+ R    D ++ +  + FS E        I 
Sbjct: 239 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--EDYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++ + +SE R +L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKIEETISEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I+ ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPEK 707


>gi|225630576|ref|YP_002727367.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
 gi|254782747|sp|C0R3T4|PNP_WOLWR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225592557|gb|ACN95576.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
          Length = 757

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/698 (45%), Positives = 449/698 (64%), Gaps = 6/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GR L LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRTLSLETGKIARQAHGSVVVNYGDTSVLVTVV-SKKKEENVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQ-GSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E +  SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +   +D   +     K  R + ++ +++ +++      +  +E  I    ++ 
Sbjct: 240 DITQEL-EKYGKDFEKAYSQTVKQERVQALEAIRENILNTLKE--TGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  G+TA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE    + +  PR+    I  D+I   IG  GK IR + E++ AK+ I DDG V + ++
Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  E E A+ M+       E   I   +VV++      + F   R G +HIS+++ E + 
Sbjct: 597 SGTEAEIAKSMMIDSITELEQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHID 656

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
               V+K+ DT    ++DF+  G  KLS + VDQ TG+
Sbjct: 657 SIESVLKQDDTFKALVIDFEKGGCPKLSRRRVDQETGE 694


>gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
 gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
          Length = 727

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/709 (40%), Positives = 435/709 (61%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELGDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILYS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALTVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E N++SE  +L+A+   H   K   +A  +L +       V       
Sbjct: 181 AATYENIMMVEGEMNEVSEQDLLEALKAAHEAIKIHCKAQMELMEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + + +      +         K+ R    D + ++  + F+ E      G I 
Sbjct: 239 ENDEDLRKAVHDACYEKAYAIAASGNRNKHERQDAFDAICEEFKAQFTEEELEEKAGMID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGSS+F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGVPI  PV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT +GITA QMD+K  G++ +I+  AL QAK GR +
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKCDGLTYDILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ILN++++ + + R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILNKLTECIGKPRQDLKPNAPRIETMIIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPE+ ++Y+G+V  +M +GAFV F   +DGL+
Sbjct: 597 NGVGRIEIAGNNKKMIDDAMRLIKGIVAVPEIGEVYQGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETIEEAGLKEGDDIEVKLLDIDSKTGKFKLSHKVLLPKP 705


>gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
 gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
          Length = 718

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/697 (42%), Positives = 430/697 (61%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T    +  ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSK-GREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q+I   +  D    P
Sbjct: 65  LYAAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
            V+++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V
Sbjct: 125 DVLAVTGASIATLMAQIPFNGPMAAVRVGLVGDDFIINPTYAETENGDLDLIVAGSPHGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L          + P   D    + +
Sbjct: 185 IMVEAGANQLPEQDIIEAIDFGYEAVRDLIQAQQDLLAEMGLKVVQEAPPEEDPTLSNYI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIV 292
            +  S  IK+ L    +   K  R + +D +K+++   ++    E+      + N   + 
Sbjct: 245 RDRASDEIKKILSQFEYT--KAQRDEALDVVKEQVASAINELPEENEVRAAATANSKALG 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
           + F+DI    +R  ++D  VR+DGR  + VR +S QVG+L  R HGS LF RG TQ +  
Sbjct: 303 NTFKDITKHFMRRQIVDDNVRVDGRKLDEVRPVSCQVGVLPKRVHGSGLFNRGLTQVLST 362

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            TLGT  D Q + D L   Q   ++ HYNF P + GE   M  P RREIGHG LA RA+ 
Sbjct: 363 CTLGTPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPMRFPGRREIGHGALAERALV 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP    FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI KPV+G AMGL+K+G
Sbjct: 423 PVLPSKEAFPYVIRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPILKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A+ QAK  RLH
Sbjct: 483 DEVRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIAQAVHQAKSARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M + + E R++   + PR+  + I  D I  VIG GGK I+GI E+TGAK++I+DD
Sbjct: 543 ILDKMLQTIQEPRVETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV I++   +  + AR +I+ +T       +Y G+V +++  GAFV F   ++G++HIS
Sbjct: 603 GTVTISAVDESRAKKARNIIQGMTRKLHEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V VK+ + D++G+I L+ 
Sbjct: 663 QLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTR 699


>gi|213961824|ref|ZP_03390090.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213955613|gb|EEB66929.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 744

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/707 (39%), Positives = 432/707 (61%), Gaps = 12/707 (1%)

Query: 1   MFDVHTVEI-EWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      EI E   GR + +ETG++A+Q+DGAV+   G  ++LATVV  + +    DF P
Sbjct: 1   MIPEVKKEIIELGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++
Sbjct: 61  LTVDYREKFAAAGRFPGGFFKREARPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLI 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
            HD    P  ++ +AASA L +S +PF+GP+   +V  +NGQ+++NP  ++ +   +D+ 
Sbjct: 121 SHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASDIDIM 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSK- 235
           V  ++D V MVE E +++SE  + +AI F H   KP IEA  +LA+   K E    + + 
Sbjct: 181 VGASKDFVAMVEGEMDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRSYEPEV 240

Query: 236 DFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           +  +++ ++           +     K  R ++   +K++ ++ F+ E        I   
Sbjct: 241 ENEEVKVKVYDFAYNKCYAIAKENTTKQERGEKFAAVKEECLALFTEEELEELTPIITRY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F D + + VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTL
Sbjct: 301 FGDAEKEAVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  +   +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P
Sbjct: 361 GTSREANVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
                PYT+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DG+ + 
Sbjct: 421 --EDCPYTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-- 592
           ++  +++    +    P++  M +P + I   IG GGK I+ +  +T   + +++ G   
Sbjct: 539 ITDTIAQPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELG 598

Query: 593 -VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V+I  +  A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS+
Sbjct: 599 IVEILGTDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           +S +R+ K  D +KEGD + VK L  D +  K ++S K +     + 
Sbjct: 659 VSWDRIEKIEDALKEGDIIEVKYLGIDPKTKKTRVSRKALLPRPPRE 705


>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
 gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
          Length = 747

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/716 (41%), Positives = 431/716 (60%), Gaps = 27/716 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +  TVE+   G  +K  TG +A+ ++GAV  + GET V        ++K GQDFFPLT
Sbjct: 1   MDNKKTVEVP--GTNIKFTTGDMAKFANGAVTVSIGETNVFVAATAATTIKPGQDFFPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGGY +RE +P+E EIL SR+ DR  RPLF + + NE QV+  ++  
Sbjct: 59  VDYREKYSAAGRFPGGYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQVVGLLLSA 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D      +  +  ASAAL +S +P+ GP+   +V  I+GQ+V NP +++    SLDL   
Sbjct: 119 DQLHEADIAMVNGASAALAISDIPWAGPIGAVRVAQIDGQFVANPTIEQMFSSSLDLIYV 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP----IVIDSK 235
           GT+  +LM+E  A+Q+ ED  ++A+ F H   +P+I AI +LA    K      +V    
Sbjct: 179 GTEKDMLMIEGSADQIPEDRFVEALEFAHQAIQPIIAAIKELAAKVGKPKAQFALVTAKP 238

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVS 293
           +   + E +  + +  +  + F  EK VR   ++ LK +  +   +E    ++   +I  
Sbjct: 239 EARAIIERVVPIAR--VSEAIFGFEKQVRGANVNALKVEAEAALKAELGEGNYAPHDISI 296

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           VFED+Q K  R  +L++ +R D RD++T+R ++++VG L R HGS+LF RGDTQ +V  T
Sbjct: 297 VFEDLQYKAYRATVLERGLRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTAT 356

Query: 354 LGTREDEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           LG  ++ Q +D L+ G     F++HYNF P + GE  R G P RREIGHG LA R++ PV
Sbjct: 357 LGPTKEAQDMDGLTGGATSKSFILHYNFPPYSVGETGRFGNPGRREIGHGALAERSLVPV 416

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           LP    FPYT+R+VS+I  S+GS+SMA++CG  LALMDAGVPI  PVAGI+ GL+     
Sbjct: 417 LPPEDVFPYTIRLVSDIMASNGSTSMASICGGCLALMDAGVPIIAPVAGISCGLMTSNKD 476

Query: 471 ----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
               D ++ ++DI G+EDH G MDFK+AGT SGIT  Q+D+KI G+   I   A+ QA+ 
Sbjct: 477 DGSIDKWVTITDILGEEDHFGDMDFKLAGTTSGITGFQLDLKIKGLPIEIARTAIFQARD 536

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R+ IL  M   +   R  L  + PR++ + I P++I  +IG GGK IR IVE TGA+++
Sbjct: 537 ARVEILKAMLGAIPAPRKALSTYAPRIQTIQIDPEKIGLLIGPGGKTIRRIVETTGAQID 596

Query: 587 I--DDDGTVKIASSSLAEIEAAREMIRSITDVP------EVNKIYKGQVVKVMDFGAFVH 638
           I  DD G V I S++   +  A   I  +          EV KIY G+V  V +FGAFV 
Sbjct: 597 IADDDSGKVFIYSNNADAMNRAISEIDGLCGGSGGGAQIEVGKIYTGRVSGVKEFGAFVE 656

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
               ++GL HIS+L+  RV +T DVVK GD++ VK +  D+R  K++LS +   ++
Sbjct: 657 CLPGKEGLCHISELADFRVRRTEDVVKVGDSITVKCIGIDERSNKVRLSRRAAMKD 712


>gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM
           22836]
          Length = 723

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/703 (40%), Positives = 432/703 (61%), Gaps = 15/703 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +  T  I+   GR + +ETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPITKSIDLGDGRTITIETGKLAKQADGSVMVRMGNTMLLATVCAAKDANPGVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ RRE R ++ EIL+ R++DR++RPLF   Y  E  V + +  
Sbjct: 61  QVEYKEKFAAYGRFPGGFQRREGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V  ++GQ++LNP   +  +  +D+ V
Sbjct: 121 SDGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGQFILNPTFSQLAKADMDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKD 236
             T D ++MVE E  ++SE  +L+AI F H   K   +A  +L ++    K+       +
Sbjct: 181 GATIDNIMMVEGEMKEVSEVEMLEAIKFAHEAIKVQCQAQIELMELVGTTKKREYSHETN 240

Query: 237 FSKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
              L +++ +   +      +     K+ R      ++++  +  + E  +     I   
Sbjct: 241 DEDLRKDVWEKCYDKAYAVAASGNTNKHERVDNFKAIEEEYKANLTEEELAEKGALISRY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + D++ + +R  +LD+  R+DGR +  +R I ++V  L   HGS++F RG+TQ++  VTL
Sbjct: 301 YHDVEKEAMRRSILDEGKRLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DE+ +D +    +  F++HYNF P +TG+        RREIGHG LA RA+ P++P
Sbjct: 361 GTKLDEKIIDDVLNNGKERFLLHYNFPPFSTGDARPQRGVGRREIGHGNLAHRALKPMIP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDD 472
               +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV GIAMGL+ +  G +
Sbjct: 421 S--DYPYVIRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVTGIAMGLISEKKGTN 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QA+ GRLHI+
Sbjct: 479 FAVLSDILGDEDHLGDMDFKVCGTKDGITATQMDIKVDGLSYEILEKALNQAREGRLHIM 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD--- 589
            ++ + L E R    E  PR+E++ I  + I  VIG GGK+I+GI E+TGA V I++   
Sbjct: 539 GKILETLPEPRADFKENAPRIEVLIISKEFIGAVIGPGGKIIQGIQEETGATVTIEEIDG 598

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V++++++   I+AA   IR I  VPEV ++Y  +V  VM +GAF  F   +DGL+HI
Sbjct: 599 YGRVEVSATNKTAIDAAMAKIRGIVTVPEVGEVYTAKVRSVMPYGAFCEFLPGKDGLLHI 658

Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           S++S +RV     V +KEGD + VKL+D D + GK KLS KV+
Sbjct: 659 SEISWDRVEDMEKVGLKEGDKIEVKLIDIDPKTGKFKLSRKVL 701


>gi|307155205|ref|YP_003890589.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
 gi|306985433|gb|ADN17314.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
          Length = 718

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/701 (41%), Positives = 442/701 (63%), Gaps = 16/701 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV
Sbjct: 1   MEEFDRSISFDGRDIRLKLGLLAPQAGGSVLIQSGDTAVLVTAT-KVPGREGVDFLPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER YA G+IPGG+LRRE RP E  ILISR+IDR +RPLF    +++ QVI   +  D
Sbjct: 60  DYEERLYAAGRIPGGFLRREGRPPEKAILISRLIDRPLRPLFPHWLRDDLQVIATTLSMD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            E  P V+++  AS A++L+ +PF GP+   +V  +   +++NP   E   G LDL V+G
Sbjct: 120 EEVPPDVLAVTGASLAVILAKIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           + + V+MVE  ANQL E  +++AI FG+   + +I A   + +    E +  +    +  
Sbjct: 180 SPEGVVMVEAGANQLPEQDIIEAIDFGYEAVRDLIAAQLDVIQTLGIEIVSSEEPPVNQP 239

Query: 240 LEEEMSQMIKEDLRVSC--FIPEKYVRCKQIDDLKK----KMVSYFSSEHS-----SWNE 288
           + E +++   ++++     +  +K  R   +D++K     + ++    E       + + 
Sbjct: 240 VLEFITERTSDEIKKVLSQYDLDKTARDLALDEIKAAKVQEEIASLPEEDPVKVAVTEDS 299

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQ 347
             + ++F+D+  K++R  ++++ VR+DGR  + VR IS +VGLL  R HGS LF RG TQ
Sbjct: 300 KLVSNLFKDVTKKLMRAQIINEGVRVDGRKLDEVRPISCRVGLLPQRVHGSGLFCRGLTQ 359

Query: 348 AIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            + + TLGT  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA 
Sbjct: 360 VLSLATLGTPGDAQELADDLHPEDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAE 419

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL
Sbjct: 420 RAITPVLPTQQEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGL 479

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+GD+  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +I+  A++QA+ 
Sbjct: 480 IKEGDEVRILTDIQGIEDFLGDMDFKVAGTDNGITALQMDMKITGLSMDIVAKAIEQARP 539

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL++M  V+ + R +L  + PR+  M I PD I  VIG GGK ++ I EQT  K++
Sbjct: 540 ARLHILDKMLSVIEQPRPELSPYAPRLLTMRIDPDMIGLVIGPGGKTVKSITEQTKTKID 599

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           IDDDGTV I++S   + E A+++I ++T      ++Y G+V +++  GAFV     ++G+
Sbjct: 600 IDDDGTVTISASEAEQAERAKQLIHNMTRKLNEGEVYVGRVTRIIQIGAFVEIMPGKEGM 659

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +HISQL+  RV K  D +  GD V VK+ + D++G++ L+ 
Sbjct: 660 IHISQLAEGRVGKVEDELAVGDEVVVKVREIDNKGRLNLTR 700


>gi|29840519|ref|NP_829625.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila caviae
           GPIC]
 gi|75539485|sp|Q822C1|PNP_CHLCV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29834868|gb|AAP05503.1| polyribonucleotide nucleotidyltransferase [Chlamydophila caviae
           GPIC]
          Length = 694

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/690 (43%), Positives = 425/690 (61%), Gaps = 4/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   V +E  G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V
Sbjct: 3   FETIFVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCAA-NLEEPVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  ++GK  GG+++RE RPTE EIL SR+IDRS+RP        + QV+  V  +D
Sbjct: 61  DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQVLSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
             + P  +++   SAAL +S +P    V G +V ++N  +V+NP   E     ++L ++G
Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQISVVAGVRVGFVNNSWVVNPTKAEMDVSRMELVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSK 239
           T++A+LM+E   + L+E+ V++AI FGH     +  AI  L +   K+           +
Sbjct: 181 TENAILMIEGHCDFLTEEQVIEAIEFGHKHIATICRAIKDLQQKVGKKKNSDAIVPLPEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           ++  ++  ++        I EK         L+K++V  F  E+  +    I + F+  +
Sbjct: 241 VQSSVNTFVEGKFADLLKIKEKKAFEAASKQLEKEIVEKFLEENEIFTALNIKTAFKQAK 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +  +R ++ ++ VR DGR   T+R IS     L RTHGS LF RG+TQ + V TLG+   
Sbjct: 301 SDYMRALIREQSVRSDGRAITTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAM 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP  A+F
Sbjct: 361 AQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPAKF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D D   ILSDI
Sbjct: 421 PYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDNDHVTILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG ED+LG MDFKVAG   GITA QMD+K+ GI+  IM  AL QAK GR HIL+ M + L
Sbjct: 481 SGLEDYLGDMDFKVAGNTEGITAFQMDIKVEGITPTIMQAALAQAKAGRQHILDIMKEAL 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D G V I++SS
Sbjct: 541 AAPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSGLVSISASS 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              IE A+ MI  +    EV KIY+G+V  ++ FGAFV     ++GL HIS+ S +R+  
Sbjct: 601 PQAIEKAKSMIEGLVGEVEVGKIYEGRVTSIVPFGAFVEILPGKEGLCHISEFSKQRIEN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D VK+GD + VKLL  +++G+ KLS K 
Sbjct: 661 VGDFVKQGDILAVKLLSINEKGQYKLSHKA 690


>gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           7803]
 gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7803]
          Length = 721

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/704 (41%), Positives = 421/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+S+  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT +
Sbjct: 123 PADVLSVTGASMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS----- 238
            ++MVE  ANQL E  V++AI FG+     +I+A   + K    E +  +  +       
Sbjct: 183 GIVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQESILKDAGIEQVKPEQPEEDSTLPV 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEHS-----SWNEGE 290
            LE+  ++ I E L    F   K  R  ++D ++    + +             S N   
Sbjct: 243 YLEKACTKAIGEVLSQ--FDQSKADRDSKLDAIRSSTAETIEALKDSDPVRKLVSANSKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++    R+DGR  + VR ISA  G+L  R HGS LF RG TQ +
Sbjct: 301 LPTSFKALTKKLMRQQIVKDGKRVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETKPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G++   +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLAMGTIAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMMEAIDTPRDGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  + A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGAITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704


>gi|167758075|ref|ZP_02430202.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
 gi|167663972|gb|EDS08102.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
          Length = 695

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/696 (39%), Positives = 415/696 (59%), Gaps = 15/696 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y 
Sbjct: 3   KKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  ERLYSVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ A+ A  +S +PF+GP+   QV  ++ ++V NP   + +   L L V+ T++
Sbjct: 123 SPELTAMLGAAIATTISDIPFDGPISTTQVGIVDDEFVFNPTAAQKEASDLALTVASTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E  AN++ E  ++DAI   H   + VI  I  +   C K     +S     + EE
Sbjct: 183 KVIMIEAGANEVPEQKMIDAIFAAHELNQKVIAFIETIVAECGKPKHAYES---CAVPEE 239

Query: 244 MSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   I E     ++  + F  +K  R + I  +  K+   F+ +    N   +       
Sbjct: 240 LFAAITEIVPPSEMEEAVFTDDKQTREENIRVITAKLEEAFADKEEWLN--VLGEAVYQY 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L  + R DGR  + +R ++A++ L+ R HGS++F RG TQ   + TL    
Sbjct: 298 QKKTVRKMILKDQKRPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQICTITTLAPLA 357

Query: 359 DEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  A
Sbjct: 358 EAQRLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPNEA 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+++
Sbjct: 418 EFPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDSDDDYLV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R +IL+E 
Sbjct: 478 LTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK ++E R ++G++ P++  M I P +I +V+G  GK I  I++QTG K++I DDG V 
Sbjct: 538 MSKTIAEPRPEVGQYAPKIIQMQIDPQKIGDVVGQRGKTINAIIDQTGVKIDITDDGAVS 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I  +    +E A+ +++ I    E  ++ +G+VV + +FGAF+ F   ++G+VHIS++S 
Sbjct: 598 ICGTDANSMEEAKRLVQIIVTDFEAGQVLEGKVVSIKEFGAFLEFAPGKEGMVHISKISK 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ER+    DV+  GD V V  L  D  G++  SMK V
Sbjct: 658 ERINHVEDVLTLGDVVKVVCLGKDKMGRLSFSMKDV 693


>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
 gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
          Length = 714

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/697 (40%), Positives = 430/697 (61%), Gaps = 15/697 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
               ++  GR L +ETG+ A+   G+V  TYGETVV+AT     +     DF PLTV ++
Sbjct: 11  RRYSVDVGGRTLTIETGKYAKHVSGSVWVTYGETVVMATAQASDAPIQA-DFLPLTVEFE 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVG+IPG ++RRE RP E  IL +R+ DR IRPLF K +++E QV++ V+  D E+
Sbjct: 70  ERHYAVGRIPGSFMRREGRPGEKAILSARLTDRPIRPLFPKGFRHEVQVLLTVLSADQEN 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDA 184
           +P ++  +AASAALMLS +P+EGP+   +V   NG+ VLNP + ++   LDL V+G+++A
Sbjct: 130 TPDILGPIAASAALMLSDIPWEGPIASVRVGLQNGRLVLNP-VAQEDSQLDLVVAGSKEA 188

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           ++MVE  A ++SED +++A+ F H   +P++E   ++     K     +    +KL+ + 
Sbjct: 189 IIMVEAGAQEVSEDRLVEALEFAHRAMQPILELQEQMRAELGKPKFAYEPP--AKLDADT 246

Query: 245 SQ-----MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-----WNEGEIVSV 294
                   +++ L        K  R   ++  ++ ++                   +   
Sbjct: 247 QATLYQRAVEKGLSSVLQTASKGERSAALEAFRQTLLEELVPPAEDGSVDQERRKLVAEG 306

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F+++  + +R ++L +  R DGR    VR I  +  +L +THGS++F RG+TQ + VVTL
Sbjct: 307 FDEVVKQELRRLILQENKRADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTL 366

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q VD L     + F++HYNF P +TGEV R+   SRRE+GHG LA+R +  VLP
Sbjct: 367 GTGRDAQLVDDLGIETEDPFLVHYNFPPYSTGEVRRLRGVSRREVGHGNLAKRGLRAVLP 426

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+V ++ ES+GSSSMATVC   LAL+DAGVP+ K VAG+AMGLVK+G+  +
Sbjct: 427 SREEFPYTIRVVGDVLESNGSSSMATVCAGCLALLDAGVPLKKHVAGVAMGLVKEGEQAV 486

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED LG MDFKV GT  G+TA+QMD+KI G++  IM  AL QA+  RLHIL+ 
Sbjct: 487 VLTDILGLEDALGDMDFKVTGTRDGVTALQMDIKIKGLTPEIMRAALYQAREARLHILSL 546

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +   R ++    PR+  + + PD+I  +IG GGK IR + E+ G +++I+ DGT++
Sbjct: 547 MERAVPTHRAEMKPHVPRILTLKVNPDKIGGIIGPGGKNIRQL-EELGVEIDIEQDGTIR 605

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           + S+S A  E A+  I   T   +V +IY+G V ++ +FGAF+     +DGL+HISQL+ 
Sbjct: 606 LYSASAAAAEEAKARILGQTAEAKVGEIYEGTVTRITNFGAFIEILPGKDGLLHISQLAQ 665

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            RV K  DV+  G  + VK+   D++G++ L    ++
Sbjct: 666 GRVQKVEDVLSLGQKIKVKVNSIDEQGRVDLIRPELE 702


>gi|317472798|ref|ZP_07932109.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
           3_2_56FAA]
 gi|316899717|gb|EFV21720.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
           3_2_56FAA]
          Length = 695

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/689 (42%), Positives = 427/689 (61%), Gaps = 9/689 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V    +E AGR L +E GR+A Q++GA    YG+TVVL+T       +DG DFFPL+V Y
Sbjct: 2   VKKFSMELAGRTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+L+RE+RP+EN IL  R+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 62  EEKQYAVGKIPGGFLKREARPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP + +M+ ++ A  +S +PF+GP     V  I+G++++NP   + +   + L V+ T+
Sbjct: 122 CSPELTAMLGSAIATCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSEMSLTVASTR 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--L 240
           + V+M+E  AN++ ED++++AI   H   K +I  I  +   C KE    +  +  +   
Sbjct: 182 EKVIMIEAGANEVPEDIMIEAIFKAHEVNKEIIAFIDTIVAECGKEKHEYEHHEIDQEMY 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E+ +S +  E +  + F  EK VR + I  ++ K+   ++   +     +I       Q 
Sbjct: 242 EDMVSFITPEAMEEAVFTDEKQVREENIRGIEDKLAERYA--DNEEWLSQIGEAVYTFQK 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L  K R DGRD   +R ++A+V  L R HGS+LF RG TQ + V TLG+  + 
Sbjct: 300 KTVRKMILKDKKRPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEA 359

Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D +        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   +F
Sbjct: 360 QRLDGMDQDETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPTEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILS 477
           PY +R VSEI ES+GS+S  ++C SSL+LM AGVP+  PVAGI++GLV     DD++IL+
Sbjct: 420 PYAIRTVSEIMESNGSTSQGSICASSLSLMAAGVPVKAPVAGISVGLVTGDSDDDYLILT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL-NEMS 536
           DI G ED  G MDFKVAGTD GITA+QMD+KI G+++ I+  A+ + K  R +IL + M+
Sbjct: 480 DIQGLEDFFGDMDFKVAGTDKGITAIQMDIKIHGLTDQIIREAIARTKEARTYILHDVMN 539

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
            V+ E+R  +G++ P++    I P++I  VIG  GK I  I+++TG K++ID+ G V I 
Sbjct: 540 PVIGEARDHVGKYAPKISQYTIDPEKISEVIGKQGKTINAIIDETGVKIDIDESGRVDIL 599

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S     I+ A  +I+SI +   V  IY+G+VV++M FGAFV     +DGL+HIS+L+ +R
Sbjct: 600 SEDQEMIDKAIGIIKSIVEPLNVGDIYEGEVVRIMQFGAFVQVSPNKDGLIHISKLAKDR 659

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V K  DVV  GD V VK+L+ D  G+I L
Sbjct: 660 VEKVEDVVNIGDRVAVKVLEIDKMGRINL 688


>gi|218887594|ref|YP_002436915.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|226702648|sp|B8DN07|PNP_DESVM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218758548|gb|ACL09447.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 756

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/696 (43%), Positives = 452/696 (64%), Gaps = 10/696 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+   V     G+ + LETGR+A Q+ GAV    G TVVL T      L+    FFPLTV
Sbjct: 5   FNATRVSAVVGGKEIILETGRLANQAHGAVWVQCGGTVVLVTACTQP-LERDMGFFPLTV 63

Query: 62  NYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR +RPLF+K +++E Q++ NV+  
Sbjct: 64  DYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPVRPLFTKGFRDEVQILANVISA 123

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D E+   V+++  ASAAL +S +PFEGPV GA++  +NG++VLNP + E +   L + ++
Sbjct: 124 DQENDSDVLAVTGASAALSISPIPFEGPVAGARIGRVNGEFVLNPTMKEMEASDLAIVIA 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFS 238
            ++D+V+MVE EA+ + EDV++ A+ + H E +P+I+A  KL ++  K  + +    + +
Sbjct: 184 ASRDSVVMVEGEAHFVPEDVIVAALEWAHKEIQPLIDAQLKLMELVGKAKMAVTPPVENA 243

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EIVSV 294
           +L+  ++++   +L  +  IPEK  R      +K+K++    ++ +         E+  +
Sbjct: 244 ELKARVAELATTELDAALRIPEKMARKDARKAVKEKVLEALLADPALAENANLGREVGDM 303

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
              ++  +VR  +L +  R+DGRD++TVR I  + GLL R HGS+LF RG+T+++VV TL
Sbjct: 304 LGSLEKVLVRRRILKEGTRIDGRDTKTVRPILIEAGLLPRAHGSALFSRGETKSLVVATL 363

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G+  D Q +DSL G     FM+HYNF P + GEV  M   SRREIGHG LA +A+ PVLP
Sbjct: 364 GSSTDSQRMDSLVGDVTKKFMLHYNFPPYSVGEVK-MSRVSRREIGHGALAEKALKPVLP 422

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
           Q   FP+TLR+V+E  ES+GSSSMA VCG SL+LMDAGVP++ PVAG+AMGL+K+  +++
Sbjct: 423 QDDSFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVTAPVAGVAMGLIKEEGEYL 482

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDED LG MDFK+AGT  GITA+QMD+KI G+  ++M  A+ QA+  RLHIL E
Sbjct: 483 VLTDILGDEDALGDMDFKIAGTAEGITAVQMDIKITGLPTDVMARAMAQAREARLHILAE 542

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+KVL   R +L ++ P+   + + PD IR +IG GGK I+ I   TGA ++I+D G V 
Sbjct: 543 MAKVLEAPRTELSKYAPQHAEVFVNPDVIRIIIGPGGKNIKAITAATGASIDIEDSGKVS 602

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I + +   +E AREM++      E+ K Y G+V KV++ GA V      + LVHISQL T
Sbjct: 603 IFAPTYEAMEMAREMVQYYDQRAELGKNYVGKVRKVLEIGAIVEILPNLEALVHISQLDT 662

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            RV +  DV + G+ + VK+++ +   +I+ S K V
Sbjct: 663 NRVEQAGDVARLGEDMTVKVIEINGD-RIRASRKAV 697


>gi|225620025|ref|YP_002721282.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
           hyodysenteriae WA1]
 gi|257096669|sp|C0R0E0|PNP_BRAHW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225214844|gb|ACN83578.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
           hyodysenteriae WA1]
          Length = 712

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/695 (41%), Positives = 442/695 (63%), Gaps = 5/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + TV+  + G  L LETG +A+Q+ G+V    G T +LATVV  +      DFFPLTVNY
Sbjct: 1   MVTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I  V+  D +
Sbjct: 61  NEKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
                ++++A+SAAL +S +PF GPV   ++ Y NG+Y++NP+  E     LD+ V+G++
Sbjct: 121 MPTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVAGSK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LM+E EA ++SE+V + AI   H E +  I+  +++A +C  + I  +  +F + L 
Sbjct: 181 DAILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEFDADLV 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQA 300
           + +++  ++ +  + + P+K  R + +D+   ++  Y  ++        ++  +   I+ 
Sbjct: 241 KMVTEYGRDKIESANYNPDKTKRNESMDNAFNEIEEYIKTKVEDEKLISQVKGICHSIEE 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  +++K +R DGR  + +R I+    L+ R HGS+LF RG TQ + +VTLG+ +D 
Sbjct: 301 EIVREAIVEKCMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDA 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D + G +   FM+HYNF P + GEV R GAP RREIGHG LA R+ + VLP   +FP
Sbjct: 361 QLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++  VAGIAMGL    D + IL+DI 
Sbjct: 421 YTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDIQ 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  GITA Q+D+K+ GIS  I+  AL+QAK+ R  IL+++     
Sbjct: 481 GVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKI-DATI 539

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +  ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V I D G V I +   
Sbjct: 540 ANAGEISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPDT 599

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++   ++I S    PEV ++Y G V  + DFGAFV      +GL HIS+L+ + V   
Sbjct: 600 PTLDKTIKLINSYVKDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVMNV 659

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +V+K GD V VK+LD    GK  LS K + +   
Sbjct: 660 EEVLKIGDEVKVKILDV-KGGKYSLSRKALLEKPA 693


>gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
 gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
          Length = 753

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/711 (40%), Positives = 434/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 38  MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 97

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 98  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 157

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  ++ ++  +DL V
Sbjct: 158 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFEQLEKADMDLMV 217

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 218 GATYENIMMVEGEMDEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 275

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E        I 
Sbjct: 276 VNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAPLID 335

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ++  V
Sbjct: 336 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTV 395

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 396 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 455

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 456 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 513

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 514 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 573

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 574 ILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 633

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 634 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 693

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 694 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPRPER 744


>gi|257784591|ref|YP_003179808.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
           20469]
 gi|257473098|gb|ACV51217.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
           20469]
          Length = 732

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/692 (41%), Positives = 425/692 (61%), Gaps = 10/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E +  G+   LE G +A+Q+ GA +   G++ VL T V  +  KD  DFFPLTV++
Sbjct: 3   KVTHEFDLYGKHYTLEAGELAKQATGACIVKCGDSTVLLTAVVSKERKD-YDFFPLTVDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVG++PGGYL+RE+RP+E   L +RMIDR +RP F + ++NE Q++   +  D  
Sbjct: 62  IEKMYAVGRVPGGYLKREARPSEKATLTARMIDRPLRPSFPEGFRNEVQIVATSLVADQV 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDE-DQGSLDLFVSG 180
           ++   +S++ ASAAL + G+PFEGP+   ++      G++++NP  +E D   LDL + G
Sbjct: 122 NAVDTISVMGASAALAVGGVPFEGPLACVRIGRNADTGEFLVNPTYEERDHSDLDLELGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFS 238
           +   + M+E  A+++SE+ +L A+ FG        E   K      +   PIV       
Sbjct: 182 SSTFISMLEAGADEISEEDMLSAMAFGQEAIAAFCEEQKKFIAKWEEVNGPIVKREYILD 241

Query: 239 KLEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +   E+   I    + +  +    +K  R +++ DL  ++ + F+ E        I    
Sbjct: 242 EPIAEVHDRIFAYYDQMSAALKDADKQSRMQKVADLMDEIKAQFTEEEQELWSRAIAVEL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++   +R ++++   R+DGR +  +R I  +   L   HGS LF RG TQ + + TLG
Sbjct: 302 KALEKHAMRVMVVETGERVDGRVANEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D++       ++ HYNF P  TGE  RMG+P RREIGHG LA RA+ PV+P 
Sbjct: 362 MLNEWQRLDTIEPMDGKRYIHHYNFPPFCTGETGRMGSPKRREIGHGALAERALLPVIPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSSMA+ CGS+L+LMDAGVP+ +PV+G+AMGL+++    ++
Sbjct: 422 EEEFPYTIRVVSEVMESNGSSSMASTCGSTLSLMDAGVPLKRPVSGVAMGLIQENGKTVV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL QA  GR+ ILN+M
Sbjct: 482 LTDIQGLEDFLGDMDFKVCGTTKGITAMQMDNKATGLTPEILRNALMQAHEGRMFILNKM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +   R +  E  P++  ++IP D+IR+VIG GGKVIRGI E TGA V+I +DGTV I
Sbjct: 542 LEQIPAPRTETKETAPQIISLSIPIDKIRDVIGSGGKVIRGIQEDTGATVDIQEDGTVFI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A ++ A  EAA E I++I  VPEV + Y G+VV +  FGAFV     +DGL+HIS+++  
Sbjct: 602 AGTNGAA-EAAAERIKAIVKVPEVGEEYTGRVVGLQPFGAFVELLPGKDGLLHISRVAQG 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           RV K  DV+  GD V VK+L+ D++GKI L  
Sbjct: 661 RVEKIEDVLAIGDEVKVKVLEVDEKGKISLDR 692


>gi|182417579|ref|ZP_02948904.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
           5521]
 gi|237668128|ref|ZP_04528112.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378592|gb|EDT76120.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
           5521]
 gi|237656476|gb|EEP54032.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 701

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/703 (41%), Positives = 446/703 (63%), Gaps = 9/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V  +  E AGR LK+E G++   S+ A   +YG+TV++  V      ++G DFFPL+
Sbjct: 1   MNNV--LSTEIAGRELKVEFGKVGMLSNAATFTSYGDTVIMTNVNASEEPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+ER YAVGKIPGG+++RE RP+E  IL  R +DR+IRPLF K Y+N+ QV+  V+  
Sbjct: 59  VEYEERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTIRPLFPKGYRNDVQVVTTVVSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + ++ P ++++ AAS AL LS +P+  PV   QV  I+G+ V NP     ++  L L V 
Sbjct: 119 EKDNIPEILAINAASLALCLSSIPYTIPVAAVQVGLIDGKLVTNPDSKGREESILHLTVC 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ V+M+E   N++ ED +++AI +G +EC+ +I    +      K+          +
Sbjct: 179 ATKERVMMIEAGGNEIPEDKMIEAIEYGFDECQKIISFQEEAMAKFGKKKDEPLLYTIDE 238

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            LE+E+     + ++ + +I +K  R   ID + +K+ + F+ ++   N G+I  V    
Sbjct: 239 TLEKEVKDFAFDMVKEAMYIMDKDERNAAIDAVNEKVKAEFAEKYPD-NLGDIKEVLYTT 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K+VR ++L++K R DGR  + VR +  +VG+L RTHG+ LF RG TQ + V TLG+  
Sbjct: 298 QKKIVRNMLLNEKRRPDGRAFDEVRPLGCEVGILPRTHGTGLFTRGLTQVMTVATLGSIS 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D +  TQ   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 EIQILDGIDETQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D     ++
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSQEQVI 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ RL I+++++
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLQGFSFNVVENAIRDARKARLKIIDKIN 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R  +  + P+ E+M I PD+IR+VIG GGKVI  I+  TG K++I +DGTV ++
Sbjct: 538 ECMPEPRKDVSLYAPKTEVMTINPDKIRDVIGAGGKVINKIIADTGVKIDIKEDGTVFVS 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           SS    + AA+++I  +T      ++Y G+V K+  FGAFV     ++GLVHIS+L+ ER
Sbjct: 598 SSDHEGVNAAKKIIEGLTKEVVAGEVYLGKVTKITTFGAFVEILPNKEGLVHISKLAKER 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV--VDQNTGKP 697
           V K  DVV  GD + VK+ + D++G+I LS K    +Q+  + 
Sbjct: 658 VEKVEDVVSAGDEILVKVTEIDNQGRINLSRKDAIAEQDEKED 700


>gi|312879870|ref|ZP_07739670.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
           DSM 12260]
 gi|310783161|gb|EFQ23559.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
           DSM 12260]
          Length = 756

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/691 (40%), Positives = 428/691 (61%), Gaps = 5/691 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  ++ AGR L  ETG++A+Q++ +V A YGETV+L T V     ++G DFFPL V+Y
Sbjct: 2   PQTFTLDLAGRTLSFETGKMAKQANASVFARYGETVILVTSVLAEKAREGLDFFPLLVDY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER Y+ GKIPGG+++RE RP+E  IL  RM+DRSIR LF    +N+  V+  V+  D +
Sbjct: 62  EERFYSAGKIPGGFIKREGRPSETAILSGRMVDRSIRSLFPDYLRNDVHVVATVLSVDQQ 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P+V+++ AASAAL LS +P+EGP+   ++  ++G  V+NP   E    +LDL V+G +
Sbjct: 122 NAPNVLAINAASAALALSDIPWEGPIGAVRIGCLDGNLVVNPTEQEIPLSTLDLLVAGHE 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
             + MVE  A ++SE +++DA+   H E + ++  I ++     K      +     +++
Sbjct: 182 GGITMVEAGAQEVSEALLVDALELAHREIRRIVAFILEMRAAAGKPKRDFPAPARIPEID 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + +   +  ++  +  + +K  R   +  + +K V  F+  + +  +G +  V E+    
Sbjct: 242 QWVLSELDGEIYQAVQVHDKMERAAALSKVSQKAVEQFAEAYPNA-KGYVAGVVEERVKD 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-REDE 360
            +R ++L++  R DGR  + +R I  + GLL + HGS+LF RG+TQ++ V TLG   ED+
Sbjct: 301 GLRRLLLEEGRRADGRKMDELRPICCETGLLPKAHGSALFTRGETQSLAVTTLGMVGEDD 360

Query: 361 QYVDSLSGTQ-RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D L   +    F++HYNF P + GEV  M  P RREIGHG LA RA+ P+ P  A F
Sbjct: 361 QILDGLKHDEPSKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPMFPDEAAF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS+I ES+GSSSMA+VCG SL++MDAGVP+ K VAG+AMGLV DG    IL+DI
Sbjct: 421 PYVVRVVSDILESNGSSSMASVCGGSLSMMDAGVPLKKAVAGVAMGLVTDGSRVRILTDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKV GT  G+TA+QMD K GGI+  I+  AL QA+ GR+ IL+ M   L
Sbjct: 481 QGLEDHYGDMDFKVTGTRDGVTALQMDNKAGGITRAILEQALSQAREGRMKILDIMDGAL 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R ++    PR+  + I P++IR VIG GGK IR IV QTGAKV+++DDG + +A+ +
Sbjct: 541 QTPREEISPNAPRILTLTIDPEKIREVIGPGGKTIRSIVAQTGAKVDVEDDGRIYVAALT 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 A ++I  +T   +  + + G V +++ FG FV     ++GL+H+S++ST  + +
Sbjct: 601 YEAANHAVKIITDLTREVQAGETFLGTVTRMLSFGVFVEVLPGKEGLLHVSEVSTYHIPR 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             D    GD V V + + DD  ++ LS + +
Sbjct: 661 LEDAFSIGDQVLVVVKEIDDMKRVNLSRRRL 691


>gi|187932015|ref|YP_001892000.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|257096689|sp|B2SDK7|PNP_FRATM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187712924|gb|ACD31221.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 693

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  +VL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNIVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  +       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRMEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|299147541|ref|ZP_07040605.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
 gi|298514328|gb|EFI38213.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
          Length = 752

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 440/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 45  MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 104

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 105 QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 164

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 165 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 224

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 225 AATYENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGK--TVKREYNHE 282

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 283 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 342

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 343 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 402

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 403 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 462

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 463 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 520

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 521 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 580

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 581 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 640

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 641 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 700

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 701 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVLMPRPEK 751


>gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 789

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/709 (47%), Positives = 476/709 (67%), Gaps = 13/709 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ++GAV+ TYG T VL+TVV  +  K+  DF PLT
Sbjct: 1   MFNLIRKSTEWGGKTLVLESGKIARQANGAVVVTYGGTTVLSTVVAGK-AKEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQGSLDLFV 178
           D  + P V +++ A+AAL +SG+PF G VVGA+V Y+    +Y+LN   DE   S     
Sbjct: 120 DTVTPPEVTALIGATAALAISGVPFNGMVVGARVGYLLSEDKYLLNASADEMLSSSLDLF 179

Query: 179 S-GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
             G +D+VLMVE EA++LSE  +L AI FGH  C+ VI+ I +  +     P      D 
Sbjct: 180 LSGNKDSVLMVESEASELSESQMLGAISFGHQNCQEVIKLIEEFREESGILPFGFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEG 289
           + L ++++    E   ++     K  R  +++ L+ +++S   +++          ++  
Sbjct: 240 TSLVDDIASSYTESFSIAYSNIVKKERVLELEKLRDQVLSDMLAKYEQPNGNLQCQYSSQ 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           +I+S  +  +  +VR+ +++   R+DGR    +RDI  ++ +L +THGS+LF RG+TQA+
Sbjct: 300 DIISALKSFERSLVRSKIIETSSRIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQAL 359

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV  LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA +AI
Sbjct: 360 VVTALGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWKAI 419

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             VLP+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+
Sbjct: 420 RYVLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKE 479

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ FIILSDI GDEDHLG MDFKVAGT SGITA+QMDMKI GIS  ++  +L QAK GR+
Sbjct: 480 GEKFIILSDILGDEDHLGDMDFKVAGTSSGITALQMDMKISGISIEVIEKSLLQAKDGRM 539

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL++M+ V+ ESR  +    PR+E + I  D+IRNVIG GGK IR I E+TGA+V I  
Sbjct: 540 HILDKMNLVIQESRECIKNHAPRIESIFINKDKIRNVIGSGGKNIREICEKTGARVEIMQ 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV I + +   +E A+ MI  I   PE+ K++ G V++++ FGAFV F G + GL+HI
Sbjct: 600 DGTVMIYAINNDAVEYAKNMIMDIVSEPEIGKVFDGTVIEIVKFGAFVSFLGGKRGLIHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           S++  E +     V+   D V V ++  D R  ++LSM+ VDQ TG+PI
Sbjct: 660 SEIKNEHINAVGSVISVNDKVKVLVIGID-REYVQLSMRRVDQETGEPI 707


>gi|320333541|ref|YP_004170252.1| polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
           DSM 21211]
 gi|319754830|gb|ADV66587.1| Polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
           DSM 21211]
          Length = 718

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/695 (45%), Positives = 439/695 (63%), Gaps = 9/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T      GR L LETG++A+   GAV   YG+ V+L T      +    DF PLTV +
Sbjct: 3   PKTYSATLGGRELTLETGKLAKLVSGAVTVRYGDAVLLVTAQAREDVSP-LDFLPLTVEF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +ER YAVG+IPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D +
Sbjct: 62  EERHYAVGRIPGSFHRREGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADAQ 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
               V+  + ASAAL LS +P+ GP    +V ++ G+YV+NP  D+ D  SLDL V+GT+
Sbjct: 122 VGADVLGPIGASAALSLSDVPWAGPTACVRVGFVGGEYVVNPTYDQLDASSLDLVVAGTR 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKL 240
           DA+LMVE  A  + E++++ AI F H E +P+I+ I ++ +   +E    V D+     L
Sbjct: 182 DAILMVEAGAQVVEEELLVGAIEFAHREMQPIIDLIEQMQREVGREKFNYVADADLAVDL 241

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
             E+++  +   LR +   P+K  R   +  L+ +++     E    +    G   + F 
Sbjct: 242 VPELTEAARSGGLRDALLTPKKKDRSVALKALRDRLIGERVPEGTEDADARTGAFKTAFG 301

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ + +R ++L++ VR DGR+S TVR I  +   L R HGS++F RG+TQ +   TLGT
Sbjct: 302 RVEKQELRRLILEEDVRADGRNSRTVRPIWIETHALPRPHGSAIFTRGETQVLGTTTLGT 361

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DE  +D L+  + + FM+HYNF P +TGEV RM   SRRE+GHG LA+RAI  VLP  
Sbjct: 362 ERDEILIDDLTDDKNDRFMLHYNFPPYSTGEVKRMSGQSRREVGHGNLAKRAIRAVLPSF 421

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +RIV ++ ES+GSSSMATVC  +L+LMDAGVPI  PVAG+AMGLV +GD + +L
Sbjct: 422 EEFPYVIRIVGDVLESNGSSSMATVCAGTLSLMDAGVPIKAPVAGVAMGLVMEGDRYRVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+KI GI+  IM  AL QAK  RLHIL +M+
Sbjct: 482 TDILGLEDALGDMDFKVCGTAEGVTALQMDIKIQGITPAIMREALAQAKEARLHILGKMA 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VL   R +L    PR+  + I P++I +VIG GGK IR + E  GA+V I++DGTV+I 
Sbjct: 542 EVLPAPRAELSPTAPRIITVKINPEKIGSVIGPGGKQIREL-EAMGAQVTIEEDGTVRIF 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+  A  +A RE I +IT   +V + + G VVK   FGAF++    +DG++HISQ+S ER
Sbjct: 601 SADGAAAQAVRERIEAITREAKVGEEFDGTVVKTAAFGAFINLFPGKDGMLHISQMSEER 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V    DV+  GD V VK+ + DDRGKI L    ++
Sbjct: 661 VNAVEDVMNVGDKVRVKIANVDDRGKIDLIRPELE 695


>gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 729

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/722 (42%), Positives = 446/722 (61%), Gaps = 28/722 (3%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-QDFFPLTV 61
           V T EI+   G+ LK+ETG++A+Q+DG+ + +  ET+VLATVV  +      Q+FFPL V
Sbjct: 2   VFTKEIDLGQGKVLKIETGKMAKQADGSAVVSLEETMVLATVVSKKDAPPANQNFFPLQV 61

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+  A GK PGG+++RE RP++ EIL +R+IDR++RPLF   Y  ETQ+I+ V+  D
Sbjct: 62  EYREKYSAAGKFPGGFIKREGRPSDKEILSARLIDRALRPLFPDGYYQETQIIVTVISSD 121

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
             +   V+  +AAS ALM S +PFE P+   +V  ING +++ P + E ++  +D+ + G
Sbjct: 122 QLNDADVLGGIAASCALMASDIPFENPMSEVRVGRINGDFLIFPHVQELEESDMDICIGG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T D + M+E E +++SE  ++ AI FGH+  + + EA  +L ++  K   V +       
Sbjct: 182 TADTICMLEGEMSEISEAEMIGAIKFGHDVIRKICEAQRELREVVGKPKRVFEPTIIPDD 241

Query: 240 LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDL------------KKKMVSYFSSEHSS- 285
           ++  + ++ +  L+  +    +K  R  +  ++            K ++     +E+   
Sbjct: 242 MKAAIREVAEARLKELAYQPLKKEERADKTAEVYADASAAVLRKYKAEITDEILAENPEK 301

Query: 286 ---WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
               NE  I     DI+  V+R ++L    R+DGR  + +R IS ++GL+ R HGS+LF 
Sbjct: 302 AIYLNEKAINDYIHDIEKHVMREMILADAKRLDGRRLDEIRPISIELGLIPRAHGSALFT 361

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQA+V +TLGT++D Q  D+L       FM+HYNF P + GEV RMG+ SRREIGHG
Sbjct: 362 RGETQALVTLTLGTKKDAQLTDTLFDDADKRFMLHYNFPPFSVGEVGRMGSVSRREIGHG 421

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RAI  V+P    FPYT+R+VS+I ES+GSSSMA+VCG +LA MD GVPI  PVAGI
Sbjct: 422 NLAERAIKKVVPAENAFPYTMRVVSDILESNGSSSMASVCGGTLAAMDGGVPIKSPVAGI 481

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+G+ + +LSDI G+EDHLG MDFKVAGT  GITA QMD+KI G+   I+  AL+
Sbjct: 482 AMGLIKEGERYAVLSDILGNEDHLGDMDFKVAGTIDGITACQMDIKIDGLDYAIVEKALE 541

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA++GR+HIL  M + ++  R +L ++ PR+  + IP D I  VIG GG+ IR +  +T 
Sbjct: 542 QARQGRMHILKIMDEAITSPRQELAKYAPRLTTIQIPVDAIGAVIGKGGETIRALTSETN 601

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM-DFGAFVHFCG 641
            +++I DDGTV IAS S     AA + I+ +   PEV  +Y G+V +V  D GA V    
Sbjct: 602 TEIDIADDGTVTIASVSSEGSAAAVDAIKLLVSDPEVGMVYNGKVKEVRDDLGAIVEILP 661

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD------RGKIKLSMKVVDQNTG 695
              GL+HIS+LS +R  K SD++K G    VKL+          R +  LSMKV+ +   
Sbjct: 662 GVTGLLHISELSHQRGTKPSDILKVGQKTKVKLIRMAKDPKDPRRTRYSLSMKVLVEPPA 721

Query: 696 KP 697
           + 
Sbjct: 722 ED 723


>gi|160883669|ref|ZP_02064672.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
 gi|156111082|gb|EDO12827.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
          Length = 752

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 440/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 45  MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 104

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 105 QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 164

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 165 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 224

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 225 AATYENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGK--TVKREYNHE 282

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 283 VNDEDLRKAVREACYEKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKGALID 342

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 343 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 402

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 403 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 462

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 463 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 520

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 521 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 580

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 581 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 640

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 641 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 700

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 701 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVLMPRPEK 751


>gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 708

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/692 (41%), Positives = 447/692 (64%), Gaps = 4/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  V     G+ + +ETG  A+Q++GAV+   GET V    V     +   DF PLTV Y
Sbjct: 8   VEKVSATIDGKEISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEY 67

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+TYA GKIPGG+++RE +P+  EIL+SR+IDR IRPLF K + N+  +    +  D +
Sbjct: 68  REKTYAYGKIPGGFVKREGKPSNREILVSRLIDRPIRPLFPKGFHNDVIITAMTLSADDK 127

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P V+++   SAALM+S  PFEGP+ G +V  ++G+++ NP  +E D+  +D+ V+GT+
Sbjct: 128 NDPDVLAITGVSAALMISEAPFEGPIAGVRVARVDGKFIANPTYEERDKSDMDIVVAGTK 187

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
           DA++MVE  + ++ E+ +L+AI+F H   K +I+   +L K   KE IV++  +  +  +
Sbjct: 188 DAIVMVEGGSEEVPEEEILEAIMFAHEHIKQLIDFQIELQKKVGKEKIVVEKDEIEEKLK 247

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           E  +  ++++  +  I +K  R K ID + +K V           + +I  ++++  +++
Sbjct: 248 EDLEKYRDEIFEAFKIQDKKERNKTIDSIFEKAVEEIEIPEDILVKAKI--IYKEFVSQL 305

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG-TREDEQ 361
           +R  +   K R+DGR  + +R I  +VG+L R HGS+LF RG TQA+ VVTLG   E++ 
Sbjct: 306 MREKVFKDKTRIDGRKPDEIRPIWIKVGMLPRVHGSALFTRGQTQALGVVTLGAPGEEQI 365

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
                 G ++  FM+HYNF P + GE     APSRREIGHG LA RA+ P++P    FPY
Sbjct: 366 EESIEEGEEKKRFMLHYNFPPFSVGEARPPRAPSRREIGHGALAERALEPLIPSEEDFPY 425

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            +R+VSEI ES+GS+SMATVC  SL+L DAGVP+ K VAGIAMGL+K+ D++IIL+DI G
Sbjct: 426 VIRVVSEILESNGSTSMATVCAGSLSLFDAGVPMQKHVAGIAMGLLKEEDEYIILTDILG 485

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKVAGT  G+TA+QMD+KI G+++ I+  ALQQA++ R HIL+ M + + +
Sbjct: 486 DEDHLGDMDFKVAGTRDGVTAIQMDIKIKGLTKEILEKALQQARKARFHILDLMYEAIPQ 545

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R ++ ++ P V  + + PD+I  +IG  GK I+ I+++TG K++I+ DG VKI + +  
Sbjct: 546 PRPEVSKYAPSVVKIRVLPDKIPLIIGPSGKNIKKIIDETGVKIDIEPDGLVKIYAVNKE 605

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + A +MI  +    E   I+ G+V +V D+GAFV     R  L+H+SQ++ ER+    
Sbjct: 606 AADKAVKMIDELVMDIEKGDIFLGKVTRVEDYGAFVELMPGRLSLLHVSQITGERLRSAK 665

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           D +  GD + VK++D D++G++K+S+K V ++
Sbjct: 666 DKISVGDILKVKVIDIDEQGRVKVSLKDVKES 697


>gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
 gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
          Length = 721

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/704 (42%), Positives = 422/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+S+  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT +
Sbjct: 123 PADVLSVTGASMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS----- 238
            ++MVE  ANQL E  V++AI FG+     +I+A   + K    E +  ++ D       
Sbjct: 183 GIVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQESILKDAGIEQVKPEAPDADTTLPL 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEHS-----SWNEGE 290
            LE+  S+ I E L    F   K  R  ++D ++    + +             S N   
Sbjct: 243 YLEKACSKSIGEVLGQ--FAQSKADRDSKLDAIRSNTAEAIEGLKDTDPVRQLVSSNSKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++    R+DGR  + VR ISA  G+L  R HGS LF RG TQ +
Sbjct: 301 LPTSFKALTKKLMRQQIVKDGKRVDGRTLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPNTEKTYLHHYNFPPYSVGETKPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G++ N +  A+ +A+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLAMNTIAEAINKARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMMEAIDTPRDGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  + A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGAITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQN 704


>gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
 gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
          Length = 721

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/707 (41%), Positives = 425/707 (60%), Gaps = 18/707 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRS-SGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +++G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT +
Sbjct: 123 PADVLAVTGASLATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239
            V+MVE  ANQL E  V++AI FG+     +I+A   + K    E ++  + +       
Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQQAILKEAGIEQVIPTTPEVDATLPT 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEHS-----SWNEGE 290
            LE+  ++ I E L+   F   K  R  ++D ++    + +     +       S N   
Sbjct: 243 YLEKNCTKAIGEVLKQ--FDQTKGERDDKLDAIRTSTAETIQGLKDDDPVRVAVSTNGKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++    R+DGR  + VR ISA  G+L  R HGS LF RG TQ +
Sbjct: 301 LPNSFKALTKKLMRQQIVKDGKRVDGRALDEVRTISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  N +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVNTVADAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMMEAIDTPRQGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAAEEAQRIIEGLTRKVNEGEVFTGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN  +
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQNGEE 707


>gi|330443786|ref|YP_004376772.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
           E58]
 gi|328806896|gb|AEB41069.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
           E58]
          Length = 693

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/690 (41%), Positives = 428/690 (62%), Gaps = 4/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F   ++ +E  GR L  ETG+IARQ+ G+V+    +T+V  +V     L +  DF P  V
Sbjct: 3   FSTISITLE-EGRVLIFETGKIARQAGGSVVVRSQDTLVFTSVCAA-DLSETSDFLPFRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + GK  GG+++RE RPTE EIL+SR+IDRS+RP        + Q++  V  +D
Sbjct: 61  DYQEKFSSTGKTLGGFIKREGRPTEKEILVSRLIDRSLRPSLPNRLMQDIQILSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
            ++ P  +++  A AAL LS +P    V G ++ YI+GQ+++NP   E   S  DL ++G
Sbjct: 121 GQTLPDPLAICGAGAALALSNIPQNNIVSGVRIGYIDGQWIVNPTKTELDNSPFDLVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSK 239
           T++A+LM+E      +E+ VL+AI +GH     + + +    +   KE           +
Sbjct: 181 TENAILMIEGHCAFFTEEQVLEAIDYGHKHIITICKGLKDWQQRVGKEKNFDAVLPLPKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           +   +   I + L     I  K         ++++++     +   ++   I S F+ ++
Sbjct: 241 VFTAVENRIAQPLPSLFDIEGKQALEAASQKMEEELIQELEKDDKIFSAFNIKSAFKALK 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +  +RT++ ++K+R D R   T+R IS +V LL RTHGS LF RG+TQ + V TLG    
Sbjct: 301 SDSMRTLIRERKIRADKRALTTIRPISIEVALLPRTHGSCLFTRGETQTVAVCTLGNETM 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  ++L+G   + F + Y+F P + GEV R+G+P RREIGHG+LA +A+   LP   QF
Sbjct: 361 AQRYENLNGEGSSKFYLQYSFPPFSVGEVGRIGSPGRREIGHGKLAEKALAHALPDATQF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ D ++ IILSDI
Sbjct: 421 PYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDAEEAIILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG EDHLG MDFKVAG   GITA QMD+KI GI+ +IM  AL QAK GR  IL  M + L
Sbjct: 481 SGLEDHLGDMDFKVAGNLEGITAFQMDIKIEGITLDIMKQALAQAKEGRQEILRIMHENL 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  +  L ++ PR+E M I P +I  VIG GGK IR I+E+TG +++I+D GTV I++ S
Sbjct: 541 AAPKSDLSQYAPRIETMQIKPSKIATVIGPGGKQIRQIIEETGVQIDINDFGTVSISAVS 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I  A+++I  +    EV K+Y+G++V ++ FGAF+     ++GL HIS+ S +R+ +
Sbjct: 601 SEAINKAKKIIEGLVGEVEVGKVYRGRIVSIVPFGAFIEILPGKEGLCHISEFSKQRIEQ 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            SD+ KEGD + VKL+  +++G++KLS K 
Sbjct: 661 VSDLFKEGDMIDVKLISINEKGQLKLSHKA 690


>gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Gardel]
 gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 789

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/709 (47%), Positives = 476/709 (67%), Gaps = 13/709 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ++GAV+ TYG T VL+TVV  +  K+  DF PLT
Sbjct: 1   MFNLIRKSTEWGGKTLVLESGKIARQANGAVVVTYGGTTVLSTVVAGK-AKEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPSGFYDEVSIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQGSLDLFV 178
           D  + P V +++ A+AAL +SG+PF G VVGA+V Y+    +Y+LN   DE   S     
Sbjct: 120 DTVTPPEVTALIGATAALAISGVPFNGMVVGARVGYLLSEDKYLLNASADEMLSSSLDLF 179

Query: 179 S-GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
             G +D+VLMVE EA++LSE  +L AI FGH  C+ VI+ I +  +     P      D 
Sbjct: 180 LSGNKDSVLMVESEASELSESQMLAAISFGHQNCQEVIKLIEEFREESGILPFGFIPHDI 239

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEG 289
           + L ++++    E   ++     K  R  +++ L+ +++S   +++          ++  
Sbjct: 240 TSLVDDIASSYTESFSIAYSNIVKKERVLELEKLRDQVLSDMLAKYEQPNGNLQCQYSSQ 299

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           +I+S  +  +  +VR+ +++   R+DGR    +RDI  ++ +L +THGS+LF RG+TQA+
Sbjct: 300 DIISALKSFERSLVRSKIIETSSRIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQAL 359

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           VV  LGT +DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA +AI
Sbjct: 360 VVTALGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWKAI 419

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             VLP+ + FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+
Sbjct: 420 RYVLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKAPVAGIAMGLIKE 479

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G+ FIILSDI GDEDHLG MDFKVAGT SGITA+QMDMKI GIS  ++  +L QAK GR+
Sbjct: 480 GEKFIILSDILGDEDHLGDMDFKVAGTSSGITALQMDMKISGISIEVIEKSLLQAKDGRM 539

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL++M+ V+ ESR  +    PR+E + I  D+IRNVIG GGK IR I E+TGA+V I  
Sbjct: 540 HILDKMNLVIQESRECIKNHAPRIESIFINKDKIRNVIGSGGKNIREICEKTGARVEIMQ 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV I + +   +E A+ MI  I   PE+ K++ G V++++ FGAFV F G + GL+HI
Sbjct: 600 DGTVMIYAINNDAVEYAKNMIMDIVSEPEIGKVFDGTVIEIVKFGAFVSFLGGKRGLIHI 659

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           S++  E +     V+   D V V ++  D R  ++LSM+ VDQ TG+PI
Sbjct: 660 SEIKNEHINAVGSVISVNDKVKVLVIGID-REYVQLSMRRVDQETGEPI 707


>gi|29347973|ref|NP_811476.1| polynucleotide phosphorylase/polyadenylase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572562|ref|ZP_04849964.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
 gi|81444021|sp|Q8A4N6|PNP_BACTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29339875|gb|AAO77670.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837977|gb|EES66066.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
          Length = 708

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/711 (41%), Positives = 442/711 (62%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  D+ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 181 AATYDNIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGK--TVKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + ++E      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFDAIREEFKAQFSEEELEEKAPLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D++    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VSEI ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+++++ ++E R  L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILDKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLMPRPEK 707


>gi|332882701|ref|ZP_08450313.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679501|gb|EGJ52486.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 747

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/707 (39%), Positives = 435/707 (61%), Gaps = 12/707 (1%)

Query: 1   MFDVHTVEI-EWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      EI +   GR + +ETG++A+Q+DGAV+   G  ++LATVV  R +    DF P
Sbjct: 1   MIPEVKKEIIDLGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSARDINPETDFLP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP++ EIL  R++DR +RPLF K Y  ETQV+I ++
Sbjct: 61  LTVDYREKFAAAGRFPGGFFKREARPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLI 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
            HD    P  ++ +AASA L +S +PF+GP+   +V  +NG++++NP  ++ +   +D+ 
Sbjct: 121 SHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASDIDIM 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSK- 235
           V  ++D V MVE E +++SE  + +AI F H   KP IEA  +LA+   K E    + + 
Sbjct: 181 VGASKDFVAMVEGEMDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEV 240

Query: 236 DFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           +  +++ ++  +  E     +     K  R ++ + +K++ ++ F+ E        I   
Sbjct: 241 ENEEVKAKVYPLAYEKCYAIAKENTTKQERGEKFNAVKEECLALFTEEELEELTPLITRY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F D + + VR ++L++ +R+DGR++  +R I  +VG L   HGSS+F RG+TQ++  VTL
Sbjct: 301 FGDAEKEAVRNLILEENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  +   +D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P
Sbjct: 361 GTSREANVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
                PYT+R+VSEI ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ DGD + 
Sbjct: 421 --EDCPYTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLISDGDRYA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G+S  I+  AL QA+ GR+HIL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-- 592
           ++  +++    +    P++  M +P + I   IG GGK I+ +  +T   + +++ G   
Sbjct: 539 ITDTIAQPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTKTTIVVEEVGELG 598

Query: 593 -VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V+I  +  A I+ A E + ++   P   + Y  +VV++++FGAFV F   +D L+HIS+
Sbjct: 599 IVEILGTDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISE 658

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           +S +RV K  D +KEGD + VK L  D +  K ++S K +     + 
Sbjct: 659 VSWDRVDKIEDALKEGDIIEVKYLGIDPKTKKTRVSRKALLPRPPRE 705


>gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
          Length = 758

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/698 (45%), Positives = 451/698 (64%), Gaps = 6/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    I+W GR L LETG+IARQ+DG+V+  YG+T +L TVV  +  ++  DF PL 
Sbjct: 1   MFEIIKKSIDWEGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS-LDLFV 178
           D  +SP V +++   AAL +SG+PF   + G  V    N  Y+LNP + E + S LDLF+
Sbjct: 120 DTVNSPEVPALIGTVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASNLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ VL+AI FGH   +PVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVLNAIKFGHEHLQPVIKLIKEFADTVGNKPESFAPVDIS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  ++D   +     K  R + ++ ++  +++      +  +E  I    +  
Sbjct: 240 DITQEL-EKYRKDFEEAYSKTVKQERVQALEVVRNNILNTLKE--AGKDEKLITYAVKSF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+D R  + +R I  +  +L +THGS+LF RG TQA+VV  LGT +
Sbjct: 297 ERSLVREMIRRKSVRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF P A GE S + AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPPFAVGEASAIRAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+S+ALMD GVPI  PVAGIAMGL+KD ++ IILSD
Sbjct: 417 FPYTIRVVSEIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKDKNEHIILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  GITA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R  + +  PRV    I  D+I   IG  GK IR + E++ AK+ I DDG V + + 
Sbjct: 537 ISEHRKDIKDHVPRVLSFYIDKDKISAAIGTKGKNIRSVCERSNAKIEIGDDGKVSVFAI 596

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  E EAA+ M+       E   I   +VVK+      +     R G +HIS+++ + V 
Sbjct: 597 SSTEAEAAKNMMIDSITELEQGSIIDAKVVKIEKSIVELELLNGRKGKMHISEVANQHVE 656

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
              D++K+GDT    ++DF+  G  KLS + VDQ TG+
Sbjct: 657 SIEDILKQGDTFKALIIDFEKGGCPKLSRRRVDQETGE 694


>gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
 gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
          Length = 747

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/706 (43%), Positives = 454/706 (64%), Gaps = 12/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+   V  +  G+ +  E GR+A Q+ GAV    G TVVL TV   + L+  + FFPLT
Sbjct: 5   IFNPTRVTAQVGGKEVIFECGRLANQAHGAVWMQCGGTVVLVTVC-SQPLEFDKGFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR IRPLF K    + QV+ +V+ 
Sbjct: 64  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVIS 123

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+   V+++  ASAALM+S LPFEGPV G ++  +NGQ+VLNP  ++  Q  L++  
Sbjct: 124 ADQENESDVLALTGASAALMVSPLPFEGPVAGGRIGRVNGQFVLNPSFEQQAQSDLNILF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDF 237
           + ++DA+ MVE +A  LSEDV+++A+ +G  E +P+I+A  +L ++C K  +     +D 
Sbjct: 184 AASRDALTMVEGDARFLSEDVIIEALDWGRKEIQPLIDAQLQLRELCGKAKMAFTPHEDD 243

Query: 238 SKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIV 292
             L   + ++ +E  +  +  +P+K  R      +K K++    ++     +      + 
Sbjct: 244 PALLARVHELAREAGIEDALRVPDKLERKDARKAVKGKVMEALKADPAWAENEAALKSVG 303

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +  D++ K+VR  ++++  R+DGRD+++VR I  Q G+L R HGS+LF RG+T+++V+ 
Sbjct: 304 DIIGDLEKKLVRARIVNEGTRIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVIA 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ +DSL+G     FM+HYNF P   GEV  +   SRREIGHG LA +++ P+
Sbjct: 364 TLGSSTDEQRMDSLTGDVTKRFMLHYNFPPYCVGEVKPV-RVSRREIGHGALAEKSLRPI 422

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FP+TLR+V+E  ES+GSSSMA VCG SL+LMDAGVP+S PVAG+AMGL+K+G+ 
Sbjct: 423 LPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEGEK 482

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           FI+L+DI GDED LG MDFK+AGT  G+T +QMD+KI G++ +IM  A++QA+ GRLHIL
Sbjct: 483 FIVLTDILGDEDALGDMDFKIAGTADGVTGVQMDIKITGLTTDIMRAAMRQAREGRLHIL 542

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM++ ++E R +L  F P+   + + PD IR +IG GGK I+ I   TGA V+I+D G 
Sbjct: 543 AEMARAIAEPRKELSRFAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDIEDSGR 602

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + +   +E AREM+      P++ K Y  +V KVM+ GA V      + LVH+SQL
Sbjct: 603 VSIFAPTAEALEKAREMVAYYDQRPDLGKNYLAKVRKVMEIGAIVEVLPNVEALVHVSQL 662

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGKP 697
              RV +  DV + G+ + VK+++ +   +I+ S K V  +  G P
Sbjct: 663 DVNRVEQPGDVARLGEDMLVKVIEINGD-RIRASRKAVLLEEQGHP 707


>gi|86606857|ref|YP_475620.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           JA-3-3Ab]
 gi|123504388|sp|Q2JQF4|PNP_SYNJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86555399|gb|ABD00357.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           JA-3-3Ab]
          Length = 712

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/694 (41%), Positives = 431/694 (62%), Gaps = 12/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +T  I + GR + +  G +A Q+   V  T GET VL T       + G DF PL V+Y+
Sbjct: 4   YTRSISFYGREIDINIGLMAPQAGCGVWLTSGETSVLVTATRQA-GRAGVDFLPLLVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGGYLRRE RP E   LISR+IDR +RPLF +  +++ Q++   +  D + 
Sbjct: 63  ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPLRPLFPEWLRDDVQIVATTLSVDDKV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+ ++ AS A+  + +PF GPV   +V  +  ++++NP   E + G LDL V+G  D
Sbjct: 123 PPDVLCILGASLAIHSARIPFNGPVAAVRVGLVKDEFIINPTYAEIEAGDLDLVVAGCAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLEE 242
            V+MVE  ANQL E  V++AI FG    + +++A  ++       P+ +       +L  
Sbjct: 183 GVIMVEAGANQLPEKDVVEAIEFGFEAVQELLKAQQQVFADLNITPVELPPPPQNEELVA 242

Query: 243 EMSQMIKEDLRVSC-FIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVS 293
            +++  +E++R       +K  R +Q++ +K K+ +   +             N  E+ +
Sbjct: 243 FVAEHAQEEIRSVLRQFLDKTSREQQLEAIKAKLEAQIQARPEGDPLRLYLLENPKELDN 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F+ +  K++R  +L + VR+DGR  + VR +S +VGL+ R HGS+LF RG TQ + + T
Sbjct: 303 QFKALTKKLMRQQILQEGVRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSITT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L       +M HYNF   + GEV    +P RREIGHG LA RA+ PVL
Sbjct: 363 LGTPGDAQELDDLHPVDEKRYMHHYNFPGFSVGEVRPSRSPGRREIGHGALAERALVPVL 422

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P+  +FPY +R+VSE+  S+GS+SMA+VCGS+L+LMDAGVPI  PV+G+AMGL+K+GD+ 
Sbjct: 423 PKEEEFPYVVRVVSEVLSSNGSTSMASVCGSTLSLMDAGVPIKAPVSGVAMGLIKEGDEV 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGT +GITA+QMDMKI GI+ +++  AL QAK GR +IL+
Sbjct: 483 RILTDIQGIEDFLGDMDFKVAGTRAGITALQMDMKITGITVDVVEKALLQAKAGRDYILD 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M +VL   R QL +  PR+    + P+ I  +IG GGK++R I E TGAKV+I DDGT+
Sbjct: 543 KMLEVLPAPRPQLAKTAPRLLTFKVDPEDIGKIIGPGGKMVRSITEATGAKVDISDDGTI 602

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            ++SS   + EAAR MI ++    E  ++Y G+V +++  GAFV F   ++G++HISQL+
Sbjct: 603 TVSSSVGGQAEAARAMIENLVRRVEEGQVYLGKVTRIIPIGAFVEFLPGKEGMIHISQLA 662

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             RV++  D +   D V VK+   D +G++ L+ 
Sbjct: 663 EYRVSRVEDEIAVADEVVVKVRSIDHKGRVNLTR 696


>gi|42520733|ref|NP_966648.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|81652354|sp|Q73GN4|PNP_WOLPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|42410473|gb|AAS14582.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 757

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/698 (45%), Positives = 449/698 (64%), Gaps = 6/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GR L LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRALSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQ-GSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E +  SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +   +D   +     K  R + ++ +++ +++      +  +E  I    ++ 
Sbjct: 240 DITQEL-EKYGKDFEKAYSQTVKQERVQALEAIRENILNTLKE--TGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  G+TA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE    + +  PR+    I  D+I   IG  GK IR + E++ AK+ I DDG V + ++
Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  E E A+ M+       E   I   +VV++      + F   R G +HIS+++ E + 
Sbjct: 597 SGTEAEIAKSMMIDSITELEQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHID 656

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
               V+K+ DT    ++DF+  G  KLS + VDQ TG+
Sbjct: 657 SIESVLKQDDTFKALVIDFEKGGCPKLSRRRVDQETGE 694


>gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
          Length = 732

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/721 (42%), Positives = 449/721 (62%), Gaps = 27/721 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD  T  ++ AG+ +K+ETG IARQ+ G+VL T G T VL T    + +K+GQDFFPLT
Sbjct: 1   MFDKKTYILDVAGKEVKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+ YA GK PGG+++RES+P+  E+LISR+IDR IRPLF + + N   V+INV+  
Sbjct: 61  VDYIEKFYATGKFPGGFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFNAVHVVINVVSF 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVS 179
           D  + P  ++ +  S AL LS +PF GPV G  V Y+NG+Y++NP  ++     + L V+
Sbjct: 121 DGINMPEDIATIGVSFALGLSDIPFSGPVAGVTVGYVNGEYIINPDKEQRANMDIYLSVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ A+ MVE  A+++SE+ +L+AI+ GH E K + E    +        +     ++ +
Sbjct: 181 GTKSAITMVEAGASEVSEEEMLNAIMLGHEEIKKICEQQETILNSLNITKMEFKGINYDE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS------------------- 280
                    + +L+ +  +P K  + + ID+L + ++S F                    
Sbjct: 241 RVTTFLNKYQGELKNAILVPGKLEKYEAIDNLCESLLSTFKLEIAKEILSKEKTEEEKLL 300

Query: 281 -------SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
                   +       E    + D++ K+VR +++  K R DGR  + +R ++AQ+ +L+
Sbjct: 301 ELIGENKEKSVDELVKEFKKYYHDLEKKIVRELIIFDKYRADGRKIDEIRPLNAQIDVLK 360

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393
             HGS+LF RG+TQA+V  TLG++EDEQ +D + G     F +HYNF P + GE   M A
Sbjct: 361 MPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNKKFFLHYNFPPFSVGEAGFMRA 420

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
           P RRE+GHG LA RA+  V+P    FPYT+R+VSEITES+GSSS A++CG SLALM AGV
Sbjct: 421 PGRRELGHGNLAERALKAVMPLIDDFPYTVRVVSEITESNGSSSQASICGGSLALMAAGV 480

Query: 454 PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PI   VAGIAMGL+K+ ++F +L+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+
Sbjct: 481 PIKGTVAGIAMGLIKEAENFTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKIEGIN 540

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
           + IM +AL QA +GR+HI+  M   + ESR  L E  P++  + I P +I  +IG  GK+
Sbjct: 541 KEIMEIALTQAHKGRMHIIEVMEATIPESRPNLPENAPKIINLKIDPSKIAGLIGPAGKI 600

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I+ I+E+TG K++++DDG V I      ++  A E++   T   E++K+YKG+V K+  F
Sbjct: 601 IKSIIEETGVKIDVEDDGRVSIFGVDQEKMNRAFELVTQYTLTVELDKVYKGRVTKLAKF 660

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GAFV      +GL+HIS++S +R+ +  DV+K  D V VK++  +D  K  LSMK + + 
Sbjct: 661 GAFVELVPGTEGLLHISEISHKRIKQVEDVLKVDDIVDVKVIALEDNNKFSLSMKALIEK 720

Query: 694 T 694
            
Sbjct: 721 E 721


>gi|325284098|ref|YP_004256639.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
           proteolyticus MRP]
 gi|324315907|gb|ADY27022.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
           proteolyticus MRP]
          Length = 810

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/695 (44%), Positives = 442/695 (63%), Gaps = 10/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T +    GR L +ETGR+A+   G+V   YG+T++L T    R  K   DF PLTV ++
Sbjct: 4   KTYKTVLGGRELTIETGRLAKLVSGSVTLRYGDTLLLVTA-QARQEKSTLDFLPLTVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPG + RRE RP E  IL +R+ DR IRPLF K Y++ETQVII V+  D ++
Sbjct: 63  EKHYAVGKIPGSFSRREGRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADQQN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           +P V+  + A+AAL +S +P+ GP    +V  ++GQ+V+NP   + +   LDL V+GT+D
Sbjct: 123 APDVLGPIGAAAALSISDIPWGGPTACVRVGRVDGQFVINPTAVQLERSDLDLVVAGTRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDFSKLE 241
           AV+MVE  A  ++ED ++DAI F H E + V++ I  +     +E      D +    L 
Sbjct: 183 AVMMVEAGAQVVAEDELVDAIEFAHAEMQGVLDLIDTMRAELGREKFNYLADGELAPDLV 242

Query: 242 EEMSQMIKE-DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS----SWNEGEIVSVFE 296
            E+++  +   LR +    +K  R   +  L+ +++     E      +    E+ + F 
Sbjct: 243 PELAEAARASGLRDALLTLKKQDRSANLKALRDRLIQDRVPEGEVDGAAARIEELKAAFS 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ + +R ++L++ +R DGRD+ TVR I  +V  L R HGS++F RG+TQ + V TLGT
Sbjct: 303 KVEKQELRRLILEEDLRADGRDTRTVRPIWTEVRPLPRAHGSAIFTRGETQVLGVTTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DE  +D L+    + F++HYNF P +TGEV RMGA SRRE+GHG LA+RA+  VLP  
Sbjct: 363 ERDEILIDDLTEDTGDKFLLHYNFPPYSTGEVKRMGAQSRREVGHGNLAKRALSAVLPPF 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V E+ ES+GSSSMATVC  +L+LMDAGVPI  PVAG+AMGLV +GD + IL
Sbjct: 423 EEFPYVIRVVGEVLESNGSSSMATVCSGALSLMDAGVPIKAPVAGVAMGLVMEGDRYRIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+KIGGI+  IM  AL QAK  RLHIL +M+
Sbjct: 483 TDILGLEDALGDMDFKVCGTAEGVTALQMDIKIGGITPAIMREALAQAKEARLHILGKMA 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VL   R +L    PR+  M I P+ I  VIG GGK +R + E  GA+V I++DG V+I 
Sbjct: 543 EVLPAPRAELSPTAPRIISMRIDPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGLVRIF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S++    +A +E I ++T  P+V   ++G VVK+  FGAF++    +DG++HISQ+S ER
Sbjct: 602 SANGEAAKAVQERITAVTYQPKVGDEFEGTVVKIAPFGAFINLFPGQDGMLHISQMSEER 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           +    +V+     V VK+++ D+RGKI L    ++
Sbjct: 662 IEMVEEVLLLNQKVRVKIVNIDERGKIDLIRPELE 696


>gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
 gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
          Length = 714

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 432/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMDEVSERDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVHDACYEKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAPLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ L+E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKITECLAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPRPER 707


>gi|225570607|ref|ZP_03779632.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
           15053]
 gi|225160620|gb|EEG73239.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
           15053]
          Length = 695

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/696 (39%), Positives = 408/696 (58%), Gaps = 15/696 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E+E AGR L+++  R+A+Q++GAVL  YG+T VL T       ++G DFFPL+V Y 
Sbjct: 3   KKFEMELAGRKLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER Y+VGKIPGG+ +RE + +EN +L  R+IDR +RPLF K Y+N+  +   VM  D + 
Sbjct: 63  ERLYSVGKIPGGFNKREGKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ A+ A  +S +PF+GP+   QV  ++   V NP   + +   + L V+ T+D
Sbjct: 123 SPELTAMLGAAIATTISDIPFDGPISATQVGLVDNTLVFNPTAAQKEASDMALTVASTRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E  AN++ ED +++AI   H   + VI  I  +   C K+    +S     + EE
Sbjct: 183 KVIMIEAGANEVPEDKMIEAIFAAHELNQKVIAFIDTIVAECGKQKHTYES---CAVPEE 239

Query: 244 MSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   I+E     ++  + F  +K  R + I  +  ++   F+ +        +       
Sbjct: 240 LFAAIRELVPPQEMEEAVFTDDKQTREENIRVITARLEEAFAEKEEWLE--VLSEAVYQY 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR  + +R ++A++ L+ R HGS++F RG TQ   V TL    
Sbjct: 298 QKKTVRKMILKDHKRPDGRAVDQIRALAAEIDLIPRVHGSAMFTRGQTQICTVTTLAPLA 357

Query: 359 DEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP   
Sbjct: 358 EAQRLDGLDEAETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSET 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     DD+++
Sbjct: 418 EFPYAIRTVSETFESNGSTSQASICASSMSLMAAGVPIKAAVAGISAGLVTGDTDDDYLV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKVAGT  GITA+QMD+KI G++  I+  A+   K+ R  IL+E 
Sbjct: 478 LTDIQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIATTKKARTFILDEV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K ++E R ++G + P++  M I P +I +V+G  GK I  I+EQTG K++I DDG V 
Sbjct: 538 MNKTIAEPRPEVGAYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVS 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I       +  A+ +I  I    E  +I +G+VV + +FGAF+ F   ++G+VHIS++S 
Sbjct: 598 ICGVEADSMAEAKRLIEIIVADFEAGQILEGKVVSIKEFGAFLEFAPGKEGMVHISKISK 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ER+    DV+  GD V V  L  D  G+I  SMK V
Sbjct: 658 ERINHVEDVLTLGDVVTVVCLGKDKMGRISFSMKDV 693


>gi|62185343|ref|YP_220128.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila abortus
           S26/3]
 gi|81312506|sp|Q5L5B4|PNP_CHLAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|62148410|emb|CAH64177.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus
           S26/3]
          Length = 694

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/690 (42%), Positives = 422/690 (61%), Gaps = 4/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F+  +V +E  G+ L  ETG+IARQ++GAVLA   ET V ++V    +L++  DF PL V
Sbjct: 3   FETISVTLE-EGKTLVFETGKIARQANGAVLARMQETWVFSSVCAA-NLEEAVDFLPLRV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  ++GK  GG+++RE RPTE EIL SR+IDRS+RP        + Q++  V  +D
Sbjct: 61  DYQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVWSYD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
             + P  +++   SAAL +S +P    V G +V ++N ++V+NP   E     ++L ++G
Sbjct: 121 GVTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSK 239
           T++A+LM+E   +  +E+ V++AI FGH     + +A+    K   KE           +
Sbjct: 181 TENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKHIGKEKNTSGIVSLPEE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           ++  ++  ++        I EK         L+ +++     E+  +    I   F+  +
Sbjct: 241 VQSAVNTFVEGKFVDLLKIKEKKAFEAASKQLENEVIEQLQEENEVFTAFNIKIAFKQAK 300

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +  +R ++ ++ +R DGR   T+R IS     L RTHGS LF RG+TQ + V TLG+   
Sbjct: 301 SNFIRGLIREQGLRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMAVCTLGSEAM 360

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q  + L+G     F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP   +F
Sbjct: 361 AQRYEDLNGEGLAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPMKF 420

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+RI S ITES+GSSSMA+VCG  LALMDAGVPI  P+AGIAMGL+ + D   ILSDI
Sbjct: 421 PYTIRIESNITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILEDDHVTILSDI 480

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG EDHLG MDFKVAG   GITA QMD+K+ GI+ +IM  AL QAK GR  IL  M + L
Sbjct: 481 SGLEDHLGDMDFKVAGNTEGITAFQMDIKVEGITPDIMRAALAQAKEGRQDILETMKQAL 540

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           +  +  L ++ PR+E M I P++I  VIG GGK IR I+E+ G +++I+D G V I++SS
Sbjct: 541 AAPKTDLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQIDINDSGLVSISASS 600

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              IE A+ +I  +    EV KIY+G+V  V+ FGAFV     ++GL HIS+ S +R+  
Sbjct: 601 PQAIEKAKSIIEGLVGEVEVGKIYEGRVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDN 660

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D VK+GDT+ VKLL  +++G+ KLS K 
Sbjct: 661 VGDFVKQGDTLTVKLLSINEKGQYKLSHKA 690


>gi|198274276|ref|ZP_03206808.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
 gi|198272951|gb|EDY97220.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
          Length = 727

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 432/709 (60%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELNDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYREKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  +  +   +D+ V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E  ++SE  +L+A+ F H   K   +A  +L +   K   V       
Sbjct: 181 AATYENIMMVEGEMKEVSEQDLLEAMKFAHEAIKVHCKAQMELMEEVGKT--VKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + + +      +         K+ R    D + ++  + FS E        I 
Sbjct: 239 ENDEDLRKAVHDACYEKAYAVAKSGNKNKHERGDAFDAICEEFKAQFSEEELEEKGPMID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGSS+F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRATTEIRPIWCETSPLPGPHGSSIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKMDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGVPI KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K  G++ +I+  AL QAK+GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKCDGLTYDILEKALMQAKQGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R +L    PR+E + IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKLTECIAEPRAELKPHAPRIETLTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  MI++I  VPEV ++Y G+V  +M +GAFV F   +DGL+
Sbjct: 597 DGAGRIEIAGTNKKCIDDAMRMIKAIVAVPEVGEVYTGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R     +  +KEGD + VKLLD D + GK KLS KV+    
Sbjct: 657 HISEIDWKRFETIEETGLKEGDEIEVKLLDIDPKTGKFKLSHKVLLPKP 705


>gi|187734890|ref|YP_001877002.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|226702592|sp|B2UNA9|PNP_AKKM8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187424942|gb|ACD04221.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 714

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/696 (39%), Positives = 427/696 (61%), Gaps = 11/696 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +H+VE      P+ +ETG++AR +DGAV+   G+TVVL TVV    +K+GQ FFPL+V Y
Sbjct: 3   IHSVECNVGTNPITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A G  PGGY +RE RPTE EIL  RM DR +RP+F K Y  +TQVI  ++  D E
Sbjct: 63  KEKAAAAGMFPGGYFKREGRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVITLLLSADGE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P ++S+  ASAA ++S LPF  PV   +V  I+GQ+V+NP   + +   LDL  +GT+
Sbjct: 123 NEPDILSINGASAACVVSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHSQLDLVFAGTK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           D V+M+E  AN+L E+  + A+       K + E   +L  +C KE    +      +L 
Sbjct: 183 DQVIMIEGSANELPEEDFIAALRVAQENVKVICEKQEELRAVCGKEKRAYELCLAKPELL 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E   ++  + +  + + P K  R K++  L+ ++ +     H    + ++  VFE IQ K
Sbjct: 243 EIGYEIAGDRIEEAIYAPSKVERQKKVGALRDEVEAAIKERHPEATDFDVEQVFEYIQKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDE 360
             R  +++K  R DGR  + +R ++A+V +L    HGS++F RG+T ++ + TL   E+ 
Sbjct: 303 AFRISIMEKDKRADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPMEER 362

Query: 361 QYVDSLSGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           QY+D+ +G+     F++HYNF P + G+  R G  +RREIGHG LA R+I PV+P   +F
Sbjct: 363 QYMDNYTGSVNEKRFILHYNFPPFSVGDTGRFGGQNRREIGHGALAERSIAPVVPGEQEF 422

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------F 473
           PY +R+ SEI ES+GS+SMA+VC  +++L+ AGVP+ +PVAGI++GLV + +D      +
Sbjct: 423 PYAIRVSSEIMESNGSTSMASVCAGTMSLLAAGVPLKRPVAGISVGLVTEQNDQHEITSY 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             L DI G ED  G MDFK+ GT  G+T  Q+D+K+ GI  +I+  A+  AK GR  +L 
Sbjct: 483 KTLLDIIGSEDFYGDMDFKLCGTSEGVTGYQLDLKLPGIPLSILEEAIHVAKAGRTDVLK 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M++ ++    Q+    PR+E   IP D+I  +IG GGK I+ I  ++GA +NI++DGTV
Sbjct: 543 VMNEAIAAP-AQMSPNAPRIETTKIPADRIGELIGPGGKNIKAIQAESGADINIEEDGTV 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I ++    ++ A E++  +    E+ ++Y G++V    FGAF+     +DGL+HIS+L+
Sbjct: 602 HIYAAKQEGLDRALELVTRMFKTIEIGELYTGKIVSTTTFGAFMEVLPGKDGLIHISELA 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             R AKT DVV  GD V  K +  DD+G++K+S++ 
Sbjct: 662 EGRTAKTEDVVSVGDVVTAKCIGIDDKGRVKMSIRA 697


>gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9605]
 gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 721

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/703 (42%), Positives = 423/703 (60%), Gaps = 18/703 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRS-GGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y+RRESRP E   L +R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYMRRESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A  +L K         E    DS   +
Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGITQVKPEKPDEDSTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGE 290
            LE++ S+ I   L    F   K  R   ++ +K ++   ++    +H+     + +   
Sbjct: 243 YLEKQCSKAISAVLSK--FDQSKDERDTALETVKGEVSETIAGLKEDHAVRQALASSPKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAI 349
           + + F+ +  K++R  +L    R+DGR  + VR ISA  G+L R  HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L       ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+S   +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLSVKTVAEAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDTPRDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQ 703


>gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
 gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
          Length = 758

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/707 (41%), Positives = 440/707 (62%), Gaps = 19/707 (2%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V    I  A GR + LETG++A+Q+DGAV+   G T++LATVV  +      DF PL+
Sbjct: 1   MNVIEKNITLADGRVITLETGKLAKQADGAVMLKMGNTMLLATVVSAQDAGPDVDFMPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  +VG+ PGG+ RRE + ++ EIL+SR++DR++RPLF   Y  ET V + +   
Sbjct: 61  VDYKEKFASVGRFPGGFTRREGKSSDYEILVSRLVDRALRPLFPDDYHAETFVQVTLYSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVS 179
           D ES P  ++ +AASAAL +S +PF GP+   +V  I G++V+NP      +  LD+ V 
Sbjct: 121 DEESMPDALAGLAASAALAVSDIPFHGPISEVRVARIQGEFVINPTASALKEADLDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T + ++MVE E N++SE  +LDAI F H   K    A  +LA    KE     +     
Sbjct: 181 ATYENIMMVEGEMNEVSEKEMLDAIKFAHAAIKEQCVAQQELAAAVGKEKR---TYCHEV 237

Query: 240 LEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +EE+ + I +      +         K++R + +D+++ + ++    E        +  
Sbjct: 238 NDEELRKDIWDKCYQKAYDVARQCNANKHLRGELLDNVRAEYLASLPEEEQIEKAMLVGR 297

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + D++ + +R ++LD+ VR+DGR +E +R I  +VG L   HGSS+F RG+TQ++  VT
Sbjct: 298 YYHDVEKEAMRRMILDEGVRLDGRTTEQIRPIWCEVGYLPGPHGSSIFTRGETQSLSSVT 357

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DE+ +D  +   +  F++HYNF P +TGE        RREIGHG LA RA+  ++
Sbjct: 358 LGTKLDEKIIDEATIQGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLALRALKRMI 417

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-- 471
           P    FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV GIAMGL+ D    
Sbjct: 418 P--EDFPYTVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVTGIAMGLITDKGCA 475

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  IM  AL+QAKRGR+HI
Sbjct: 476 KYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEIMEQALEQAKRGRMHI 535

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-- 589
           ++ +++ +   R  L    PR+  + I  DQI  +IG GGK+I+ I E++GA +NI++  
Sbjct: 536 MDIITETMPAPREDLKPHAPRIVTVTIDKDQIGALIGPGGKIIQDIQEKSGATINIEEVG 595

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V +++++   I+ A   IR+I   PEV ++Y G V  +M FGAF+     +DGL+H
Sbjct: 596 NKGIVDVSATNKESIDKALARIRAIVAKPEVGEVYDGIVKSIMPFGAFIEILPGKDGLLH 655

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           +S++  +R+ K  DV+KEGD + VKLL+ D + GK++LS K +    
Sbjct: 656 VSEIDYKRIEKVEDVLKEGDHIQVKLLEVDPKTGKLRLSHKALLPKP 702


>gi|226356846|ref|YP_002786586.1| polynucleotide phosphorylase/polyadenylase [Deinococcus deserti
           VCD115]
 gi|257096684|sp|C1CXB5|PNP_DEIDV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226318836|gb|ACO46832.1| putative polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) [Deinococcus deserti VCD115]
          Length = 721

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/695 (43%), Positives = 438/695 (63%), Gaps = 10/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T      GR L +ETGR+A+   G+V   YG+T++L T    R  K   DF PLTV ++
Sbjct: 4   KTYTTMLGGRELSIETGRLAKLVSGSVTLRYGDTMLLVTA-QAREEKSPLDFLPLTVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YAVGKIPG + RRE RP E  IL +R+ DR +RPLF K Y++ETQVII V+  D ++
Sbjct: 63  ERHYAVGKIPGSFHRREGRPGEKAILSARITDRQLRPLFPKGYRHETQVIITVLSADQQN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD 183
           +P V+  + ASAAL +S +P+ GP    +V  ++GQ+++NP  D+  +  +DL V+GT+D
Sbjct: 123 APDVLGPIGASAALSISDIPWGGPTACVRVGQVDGQFIVNPTADQLTRSRMDLVVAGTRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLE 241
           AV+MVE  A  +SE+ ++ AI F H E + VI+ I ++     +E     ++      L 
Sbjct: 183 AVMMVEAGAQTVSEEDLVSAIEFAHAEMQGVIDLIERMRAEVGQEKFNFLAEGDLTQDLV 242

Query: 242 EEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFS----SEHSSWNEGEIVSVFE 296
            E+++  +   +R +    +K  R  +   ++  +++ +     +E ++     +   + 
Sbjct: 243 PELAEKARAGGIRDALLTTKKKERSARTKAVRDAIIAGYVPDPNAEGAAARIASLKDAYA 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ + +R ++L++ +R DGR+   VR I  +   L R HGS++F RG+TQ + V TLGT
Sbjct: 303 KVEKQELRRLILEEDLRADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DE  VD L+    + FM+HYNF P +TGEV RMG  SRREIGHG LA+RAI  VLP  
Sbjct: 363 ERDEILVDDLTTEDNDKFMLHYNFPPYSTGEVKRMGGQSRREIGHGHLAKRAIRAVLPSF 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V E+ ES+GSSSMATVC   LALMDAGVPI  PVAG+AMGLV +GD + +L
Sbjct: 423 EEFPYVIRLVGEVLESNGSSSMATVCAGVLALMDAGVPIKAPVAGVAMGLVMEGDKYRVL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKV GT  G+TA+QMD+K+GGI+  +M  AL QA+ GRLHIL +M+
Sbjct: 483 TDILGLEDALGDMDFKVCGTAEGVTALQMDIKVGGITPQVMREALAQAREGRLHILGKMA 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VLS  R +L    PR+  + I P+ I  VIG GGK +R + E  GA+V I++DGT+++ 
Sbjct: 543 EVLSSPRPELSPTAPRIISIKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGTIRVF 601

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+  A  EA R  I  +T   +V + Y+G VVK   FGAFV+    +DG++HISQ+S ER
Sbjct: 602 SADGAAAEAVRARIAGLTKEAKVGEEYEGTVVKTAPFGAFVNLYAGQDGMLHISQISEER 661

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           ++   D +  GD + VK+   DDRGKI L    ++
Sbjct: 662 LSAVEDALNVGDKLRVKIAGIDDRGKIDLIRPELE 696


>gi|189465341|ref|ZP_03014126.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
           17393]
 gi|189437615|gb|EDV06600.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
           17393]
          Length = 714

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 438/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  D+ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMSEVSELDLLNAMKAAHEAIKVQCQAQKELAEAVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E  S     I 
Sbjct: 239 VNDEELRKAVHDACYAKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELSEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR ++ +R I +++  L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTDEIRPIWSEISYLPGPHGSAIFTRGETQSLATV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I +PV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT +GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKVDGLSFDILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++ + + E R +L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKILETIQEPREELKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I+ ++   I+ A  +I+ I  VPEV ++YKG+V  VM +GAFV F   +DGL+
Sbjct: 597 DNIGRIEISGTNKKSIDDAMRLIKGIVAVPEVGEVYKGKVRSVMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLLDIDPKTGKFKLSRKVLLPRPER 707


>gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 718

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/697 (42%), Positives = 428/697 (61%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRS-EAREGVDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q+I   +  D    P
Sbjct: 65  LYAAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDELVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V
Sbjct: 125 DVLAVTGASIATLIAQIPFYGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L          +EP + D    + +
Sbjct: 185 IMVEAGANQLPERDIIEAIDFGYEAVRDLIQAQRDLIAELGLTIVHQEPPIPDQSLENYI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIV 292
            +  S+ IK+ L  + F   K  R   +D +K  +   +     E       + N   + 
Sbjct: 245 RDRASEEIKKIL--AQFELTKTERDAALDVVKSAIASSIESLGEEDPIRIAATANGQVLE 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVV 351
           + F+DI    +R  +++  VR+DGR  + VR +S+QVG+L R  HGS LF RG TQ +  
Sbjct: 303 NTFKDITKYFMRRQIVEDNVRVDGRKLDEVRPVSSQVGVLPRRVHGSGLFNRGLTQVLSA 362

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            TLGT  D Q + D L   Q   ++ HYNF P + GE   + AP RREIGHG LA RAI 
Sbjct: 363 CTLGTPGDAQSLSDDLQVDQSKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAIL 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   QFPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+G
Sbjct: 423 PVLPTKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            +  +L+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A++QA+  RLH
Sbjct: 483 SEVRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDVIKQAVEQARDARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M + + + R +   F PR+  + I PD I  VIG GGK I+GI E+TGAK++I+D 
Sbjct: 543 ILEKMLQTIDKPRTETSPFAPRLVTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDS 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V I++      + A+ +I+ +T       +Y G+V +++  GAFV F   ++G++HIS
Sbjct: 603 GIVTISAIDEGRAKRAKSIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  G+ V VK+ + D +G+I L+ 
Sbjct: 663 QLADYRVGKVEDEVAVGEEVIVKVREIDSKGRINLTR 699


>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
 gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
          Length = 702

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/694 (44%), Positives = 457/694 (65%), Gaps = 11/694 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +V  V +      L  ETG+IA+Q+ G V A Y  + V+ATV   +   +  D+ PL+V
Sbjct: 1   MEVKKVSVRIGDADLVFETGKIAKQTSGTVYAHYEGSAVIATVCCGKEPNEALDYVPLSV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y E+ YA GKIPGG+L+RE+RP + EIL+SR+IDR +RPLF K +  E QV+  V+  D
Sbjct: 61  EYNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQVVPTVVSSD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
           + ++P ++++ AASAA+ +S +PF GP+   ++  ++G YV+NP   + ++ SLD+ V+G
Sbjct: 121 MNNTPDIIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSLDIVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFS 238
           T+D + MVE  A ++SE+V+L+AI         + +A  +L K+  KE  P+V  + D S
Sbjct: 181 TRDGITMVEGGAKEVSEEVMLEAIATAQPYITKLCDAQLELKKIAGKEKLPVVTLTVDLS 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFE 296
            L   + +     ++ + F+  K  R   +  ++ ++   F       S  +G++ S+FE
Sbjct: 241 WL-APVREYAYPLIKQASFVKGKMERYAALAKVQGEVKEKFQDVIAEDSKRDGQLSSLFE 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D++ +++R  +L+   R DGR  + +R I+ +VGLL RTHGS+LF RG+TQA+ V TLGT
Sbjct: 300 DLEYEILRASILNDGKRTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTTLGT 359

Query: 357 REDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             DEQ  D++ G +  + FM+HYNF P + GE  R+ +  RREIGHG LA+RA+  ++P 
Sbjct: 360 ASDEQMFDTIDGEKSFSSFMLHYNFPPYSVGECGRL-STGRREIGHGHLAQRALEAIVPN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD--- 472
              FPYT+R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI KPVAGIAMGL+ +G D   
Sbjct: 419 KESFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGADYSK 478

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +++LSDI G+EDHLG MDFKVAG+  GITA QMD+KI G++  IM  AL+QAK+GR+HIL
Sbjct: 479 YVVLSDILGEEDHLGDMDFKVAGSRDGITAFQMDIKIAGVTPEIMKKALEQAKQGRMHIL 538

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M   LS SR ++ E+ P++  M +  ++I  VIG GGK I+ I  Q+GA+VNI DDGT
Sbjct: 539 SIMEGALSNSREEISEYAPKILTMKVDEEKIGAVIGTGGKTIKAIASQSGAEVNIADDGT 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I     A  + A+E+++SI + PEV +IY+G V ++MDFGAF+     ++GL HIS+L
Sbjct: 599 VTIYGRDNASAQLAKELVKSIVEEPEVGRIYEGTVKRIMDFGAFIEILPGKEGLCHISKL 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  RV    DV+K G  V VKL++ D + ++ LS
Sbjct: 659 AKTRVQNVEDVLKVGQVVPVKLIEIDRQNRLNLS 692


>gi|182414231|ref|YP_001819297.1| polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
 gi|257096699|sp|B1ZS98|PNP_OPITP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|177841445|gb|ACB75697.1| Polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
          Length = 730

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/719 (40%), Positives = 426/719 (59%), Gaps = 29/719 (4%)

Query: 1   MFDVHTVEI-EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M   ++V + E     +   TG IA+ ++GAV    GET V  T    ++ K GQD+FPL
Sbjct: 1   MNQKYSVTVPELG---ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPL 57

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TV+Y+E+  A G+ PGGY +RE RP+E EIL SR+ DR  RPLF + + NE Q+I  +  
Sbjct: 58  TVDYREKYAAAGRFPGGYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFS 117

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            DL +   +  +  ASAAL +S +P+ GP+   +V  I G++V NP +D+    SLDL  
Sbjct: 118 ADLVNESDISMVNGASAALAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIY 177

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
            G +  +LM+E  A+Q+ E+  ++A+ FGH   +P+++AI +L   C K          +
Sbjct: 178 VGNEKDMLMIEGSADQIPEERFIEALAFGHESIQPILKAIKELVAQCGKPKGTFPLVGAT 237

Query: 239 KLEEEMSQMI--KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSV 294
                + + +   E L  + F  EK VR   +  LK++  +  ++E     + + ++  V
Sbjct: 238 PEARTIIERVVPTERLIEAIFGKEKAVRANAVKLLKEEAKAALTAELGEGKFTDVDLNVV 297

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           FED+Q K  R  +L++ VR DGR  + +R + AQVG+L R HGS++F RGDTQ I + TL
Sbjct: 298 FEDLQYKAYRKTVLERGVRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTL 357

Query: 355 GTREDEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           G  +D Q +D+L+ G +   F++HYNF P + GE  R   P RREIGHG LA R++ PVL
Sbjct: 358 GPTKDAQDLDALTGGVKSKSFLLHYNFPPFSVGETGRFTGPGRREIGHGALAERSLVPVL 417

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--- 470
           P    FPY++R+VSEI  S+GS+SMA++CG  L+LMDAGVPI  PVAGI+ GL+      
Sbjct: 418 PPEDVFPYSIRVVSEIMASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGLMTQNASD 477

Query: 471 ---DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
              + ++ ++DI G+EDH G MDFK+AGT  GIT  Q+D+KI G+   I   A+ QA+  
Sbjct: 478 GSIEKWVTITDILGEEDHFGDMDFKLAGTSKGITGFQLDLKINGLPFEIAKTAIMQARDA 537

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+ IL  M   L   R  L ++ PR++ + I P++I  +IG GGK IR I E TGA+++I
Sbjct: 538 RMEILKVMLGSLPAPRADLSKYAPRIQTIQIDPEKIGLLIGPGGKTIRRITETTGAQIDI 597

Query: 588 --DDDGTVKIASSSLAEIEAAREMIRSITDVP----------EVNKIYKGQVVKVMDFGA 635
             DD G V + S++   +  A + I S+              EV KIY G+V  V +FG 
Sbjct: 598 AEDDSGKVFVYSNNAEAMNRAIQEIDSLCGGGGPGGSKGPAIEVGKIYTGRVTGVKEFGC 657

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
           FV      +GL H+S+L+  RV +T DVVK GD++ VK +  D+R GK++LS K   + 
Sbjct: 658 FVECTPGNEGLCHVSELADFRVRRTEDVVKMGDSITVKCIGIDERSGKVRLSRKAAMKE 716


>gi|293115582|ref|ZP_05792154.2| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
           DSM 2876]
 gi|292808925|gb|EFF68130.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
           DSM 2876]
          Length = 705

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/699 (38%), Positives = 415/699 (59%), Gaps = 15/699 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  ++ AGR L ++  R+A+Q++GA    YG+TVVL+T       +DG DFFPL+V Y+
Sbjct: 10  KSFSMDLAGRTLTVDVDRVAKQANGAAFMHYGDTVVLSTATASEKPRDGVDFFPLSVEYE 69

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D + 
Sbjct: 70  EKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNLVMSVDPDC 129

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
           SP + +M+ ++ ++ +S +PF+GP    QV  I+G++V+NP   +     L L V+ T++
Sbjct: 130 SPELTAMLGSAISVAISDIPFDGPCATTQVGMIDGEFVINPSGSQMAVSDLKLTVASTRE 189

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            V+M+E  AN++ E  +++AI   H   + +I  I K+   C K      S     + EE
Sbjct: 190 KVIMIEAGANEIPEARMIEAIYKAHEVNQQIIAFIDKIVAECGKPKHEYTS---CAIPEE 246

Query: 244 MSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   IKE     ++ V  F PEK VR +++ +LK  +   F+ +        I       
Sbjct: 247 LFAAIKEIVPPAEMEVVMFAPEKQVREERVRNLKDMLCEKFADKEE--WLPLIDEAVYQY 304

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + K VR ++L    R DGR+   +R ++A+V ++ R HGS++F RG TQ   V TL    
Sbjct: 305 EKKTVRKMILKDHKRPDGREITQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLS 364

Query: 359 DEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           D Q +D L+  +    +M HYNF   + GE      P RREIGHG LA RA+ PVLP   
Sbjct: 365 DAQKIDGLNDQETSKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAERALIPVLPSVE 424

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV     DDF++
Sbjct: 425 EFPYAIRTVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGETDDDFVL 484

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R  I++  
Sbjct: 485 LTDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTRQIVEGAIARCREARFFIMDNC 544

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK ++E R ++G++ P++  + I P +I +V+G  GK I  I+E+TG K++I DDG V 
Sbjct: 545 MSKAIAEPRKEVGKYAPKIIQIQIDPAKIGDVVGQRGKTINAIIEETGVKIDITDDGAVS 604

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    ++ A + I++I    E   + +G+V+ + +FGAFV F   ++G++HIS++S 
Sbjct: 605 VCGTDKEAMDKAVKYIQTIVTDYEEGLVLEGKVISIKEFGAFVEFAPGKEGMIHISKVSK 664

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +R+    DV+  GD V    L  D  G+   S+K +   
Sbjct: 665 DRIEHVEDVLTLGDVVKCVCLGKDKMGRYSFSIKDLKPE 703


>gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 716

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 434/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  D+ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFDQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E N++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMNEVSEKDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAPLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-- 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNTGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILSKITECIAEPHDDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   IE A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNIGRIEIAGTNKKCIEDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPRPER 707


>gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
 gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
          Length = 714

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 432/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  INGQ+V+NP  ++ +Q  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ANYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPRPER 707


>gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
           DSM 12563]
 gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
           DSM 12563]
          Length = 716

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/695 (41%), Positives = 444/695 (63%), Gaps = 5/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + TV+  + G  L LETG +A+Q+ G+V    G T +LATVV  +      DFFPLTVNY
Sbjct: 1   MVTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+ +RE++P + EILISR+IDR +RPLF + ++NE Q+I  V+  D +
Sbjct: 61  NEKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
                ++++A+SAAL +S +PF GPV   ++ Y NG+Y++NP+  E   S LD+ V+G++
Sbjct: 121 MPTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSELDIIVAGSK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
           DA+LM+E EA ++SE+V + AI   H E +  I+  +++A +C  + I  +  ++ + L 
Sbjct: 181 DAILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEYDADLV 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300
           + +++  +  +  + + P+K  R + +D+   ++  Y  +         ++  +   I+ 
Sbjct: 241 KTVTEYGRAKIEAANYNPDKTKRNESMDNAFNEIEEYIKTTTDDEKLISQVKGICHTIEE 300

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  +++K +R DGR  + +R IS  + L+ R HGS+LF RG TQ + +VTLG+ +D 
Sbjct: 301 EIVREAIVEKSMRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKDA 360

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D + G +   FM+HYNF P + GEV R GAP RREIGHG LA R+ + VLP   +FP
Sbjct: 361 QLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPSKEKFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+V+EI ES+GSSSMAT+C S+++L+ AGVP++  VAGIAMGL    D + IL+DI 
Sbjct: 421 YTVRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDIQ 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDHLG MDFKVAGT  GITA Q+D+K+ GIS  I+  AL+QAK+ R  IL+ +   +S
Sbjct: 481 GVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDIIDSTIS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
            +  ++ +F P+ + M + P++IR +IG GGK I+ I+E+TG+ V+I D G V I +   
Sbjct: 541 NA-GEISDFAPKYKTMEVNPEKIRVLIGPGGKNIKSIIEETGSDVDIQDSGIVNIFAPDT 599

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++   ++I S    PE+ ++Y G V  + DFGAF+      +GL HIS+L+ + V   
Sbjct: 600 PTLDKTIKLINSYVKDPEIGEVYDGVVKDIKDFGAFIEILPGVEGLCHISELAYKHVMNV 659

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            +V+K GD V VK++D    GK  LS + + +   
Sbjct: 660 EEVLKIGDEVKVKIIDI-KGGKYSLSRRALLEKPA 693


>gi|224023647|ref|ZP_03642013.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
           18228]
 gi|224016869|gb|EEF74881.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
           18228]
          Length = 719

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 431/709 (60%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELGDGRTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYREKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  +  +   +D+ V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E  ++SE  +L A+ F H   K   +A  +L +   K   V       
Sbjct: 181 AATYENIMMVEGEMKEVSEQDLLAAMKFAHEAIKVHCKAQMELMEEVGKT--VKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRV-SCFIPE-----KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +EE+ + + +     +  I E     K+ R    + +  +  + F+ E        I 
Sbjct: 239 ENDEELRKAVHDACYAKAYAIAESGNKNKHEREDAFNAICDEFKAQFTEEELEEKGPMID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +V  L   HGSS+F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRATTDIRPIWCEVSPLPGPHGSSIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R+VS+I ES+GSSSMATVC  +LALMDAGVPI KPV+GIAMGL+K+   
Sbjct: 419 IP--ENYPYCVRVVSDILESNGSSSMATVCAGTLALMDAGVPIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K  G++ +I+  AL QAK+GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKCDGLTYDILEKALLQAKQGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKLTECIAEPRADLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  +M +GAFV F   +DGL+
Sbjct: 597 DGVGRIEIAGTNKKCIDDAVRLIKGIVAVPEVGEVYTGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETIEEANLKEGDEIEVKLMDIDPKTGKFKLSHKVLLPKP 705


>gi|255693073|ref|ZP_05416748.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
           DSM 17565]
 gi|260621113|gb|EEX43984.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
           DSM 17565]
          Length = 708

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/711 (41%), Positives = 441/711 (62%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE A GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELADGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E  ++SE  +L+A+   H   K   +A  +L +   K   V       
Sbjct: 181 AATYENIMMVEGEMQEVSEAELLEAMKVAHEAIKIHCKAQMELTEAVGK--TVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFEAIREEFKAQFSEEELEEKGPLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKMDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           ILN++++ ++E R +L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILNKITETIAEPRAELKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLIDIDPKTGKFKLSRKVLLPRPEK 707


>gi|315651726|ref|ZP_07904731.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
           DSM 3986]
 gi|315485981|gb|EFU76358.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
           DSM 3986]
          Length = 717

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/697 (39%), Positives = 423/697 (60%), Gaps = 10/697 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +  +E AGR L+++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V 
Sbjct: 21  EFKSYSMELAGRILRVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVE 80

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGK+PGGY +RE + +EN IL SR+IDR +RPLF K Y+N+  +   V+  D 
Sbjct: 81  YEEKMYAVGKMPGGYNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDP 140

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ ++ A  +S +PF+GP    Q+  + G +V+NP  ++     L L V+ T
Sbjct: 141 DCSPELTAMLGSAIATAISDIPFDGPCATTQIGMVGGFFVVNPNEEQMAVSDLKLTVAST 200

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           +D V+M+E  AN++ ++ +++AI    +  K +I  I K+     K+     +     +L
Sbjct: 201 KDKVIMIEAGANEIPDEKMIEAIYKADSVNKEIIAFIDKIVAEVGKQKHSYTAFTIPDEL 260

Query: 241 EEEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
              + +++ ++++  + F  EK +R + I  + +K+   F+ +    +   +       Q
Sbjct: 261 STAIREIVPQDEMEKAVFTDEKQIREENIKAITEKLEEAFADKEEWLS--LLGEAVYQYQ 318

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K VR ++L  + R DGR    +R ++A+V ++ R HGS++F RG TQ   VVTL    +
Sbjct: 319 KKTVRKMILKDQKRPDGRAMTQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVVTLAPLAE 378

Query: 360 EQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q +D L        ++  YNF   + GE      P RREIGHG LA RA+ PVLP   +
Sbjct: 379 AQKIDGLNQSETTKRYIHQYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPAPEE 438

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIIL 476
           FPY +R VSE  ES+GS+SMA+ C S +ALM AGVPI K VAGI+ GLV  +  DD+++L
Sbjct: 439 FPYAIRSVSETFESNGSTSMASTCSSCMALMAAGVPIKKMVAGISCGLVTGESDDDYVLL 498

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-M 535
           +DI G ED  G MDFKV GTDSGITA+QMD+KI G++++I+  A+ +    R  I+   M
Sbjct: 499 TDIQGLEDFFGDMDFKVTGTDSGITAIQMDIKIHGLTKDIVKGAIARCHEARDFIMETCM 558

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              ++E R ++ ++ P++  + I P +I +V+G  GK I  I+E TG K++I +DG V +
Sbjct: 559 KPCIAEPRKEISKYAPKIAQIQISPSKIGDVVGKQGKTINKIIEDTGVKIDISEDGLVSV 618

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           + +  A I+ A ++IR IT   E   I +G+VV++++FGAFV     +DG+VHIS+LS  
Sbjct: 619 SGTDQAMIDKAVDIIRGITIEIEAGMIMQGKVVRILEFGAFVELAPGKDGMVHISKLSDR 678

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           RV K  DVVK GD V VK++  D  +G+I LSMK  D
Sbjct: 679 RVEKVEDVVKIGDEVTVKVIKVDAIKGRIDLSMKPSD 715


>gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
           4252]
 gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
           4252]
          Length = 772

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/710 (40%), Positives = 430/710 (60%), Gaps = 21/710 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M      EIE+A G+ L+LETGR+A+Q++GAV+   G+T+VL T V     ++GQ FFPL
Sbjct: 2   MTQTTIHEIEFAPGKSLRLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPL 61

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TV Y+E+  A G+IPGG+++RE RPT+ EIL SR+IDR+IRPLF   + +E Q+I  V+ 
Sbjct: 62  TVEYREKFAAGGRIPGGFIKREGRPTDKEILSSRLIDRAIRPLFPDGFFHEVQIICYVIS 121

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D      V++   ASAAL+L+G PF+GP+   +V  ++GQ+V+NP L E +Q  ++L V
Sbjct: 122 ADDRYDADVLAGTGASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDINLVV 181

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKD 236
           +G +DA++MVE E  ++SE+ +L+A+   H   + +     +      +        +  
Sbjct: 182 AGKEDAIVMVEGEMKEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAHGRPEPFPYQTTTL 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYF-------------SSE 282
             +L   + ++    L      P +K    + ++ + ++ V+                + 
Sbjct: 242 PEELVARVRELAVPKLEAHLRAPYDKQTFYEGLEQIGEETVAALLGTTDAEGNQVLAEAT 301

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
              W   +I      +  +V+R ++L +  R+DGR  + +R I  +VG L R HGS++F 
Sbjct: 302 PEGWTADQIRKAVSQVTREVMRQMILREGRRIDGRSLDEIRPIWMEVGYLPRVHGSAIFT 361

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ +  VTLGT +D Q +D +       F +HY F P  TGE+  +  P RREIGHG
Sbjct: 362 RGETQVLASVTLGTSKDVQMIDQIFVQGDKRFFLHYEFPPFCTGEIRFLRGPGRREIGHG 421

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+  +LP  + FPYT+R+ +++ ES+GSSSMA+VC  SLALMDAGVP+ K VAG+
Sbjct: 422 YLAERALAAMLPDESSFPYTIRVNADVLESNGSSSMASVCAGSLALMDAGVPVKKHVAGV 481

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+K+GD   IL+DI G EDHLG MDFKVAGT  GITA QMD+KIGG++  IM  AL+
Sbjct: 482 AMGLIKEGDQVAILTDILGTEDHLGDMDFKVAGTRDGITACQMDIKIGGLTREIMQRALE 541

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+R R++IL+ M + +   R +L  + PR+  + I P+ I  VIG GG+V++GI  +T 
Sbjct: 542 QARRARMYILDLMEQTIEAPRPELSPYAPRLTQITIDPEFIGAVIGPGGRVVQGIQRETN 601

Query: 583 AKVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
             + I++    G V +A+++    + A EMI+ I  VPEV   Y+G V  +  FGA V  
Sbjct: 602 TTIEIEERDGVGVVTVAATNQENAQRAIEMIKQIVAVPEVGAEYEGIVRSIQSFGAIVEI 661

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              ++GL+HIS+L    V    D +K GD V VKL++  + GK++LS K 
Sbjct: 662 MPGKEGLLHISELDHGYVRDIHDYLKVGDKVRVKLIEIREDGKLRLSRKA 711


>gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9215]
 gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 721

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/709 (41%), Positives = 428/709 (60%), Gaps = 18/709 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L TG  A Q+ G+V+   G+T +L T     + K+  DF PL  
Sbjct: 1   MEGQNKSITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTAT-KTTKKEASDFLPLIC 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+ YA G+IPGG++RRE RP E   LISR+IDR +RPLF    ++E Q++ + +  D
Sbjct: 60  DYEEKLYAAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
                 V+++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G
Sbjct: 120 ERVPADVLAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSK 235
           + D ++M+E  ANQLSE   ++AI FG+     +I++   L K    + I       D  
Sbjct: 180 SPDGIVMIEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLKDLGIKQIKPSDPEEDKT 239

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWN 287
             S LE+  S+ I  DL +  F   K  R  +++ +K +    +     ++      S N
Sbjct: 240 LPSYLEKNCSKAI--DLVLKKFDQSKEERDLELEKIKTETQSKIDSLKDDNEVRVLTSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDT 346
           E  I S F+ +  K++R+ +++   R+DGR+ + VR I+A  G+L  R HGS+LF RG T
Sbjct: 298 EKLIHSDFKKLTKKLMRSQIINDGKRVDGRELDEVRKITASAGILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV G AMGL
Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVGGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G D  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+  +I+  A+++A+ 
Sbjct: 478 IKEGKDVRILTDIQGIEDFLGDMDFKVAGTNKGITALQMDMKITGLPVSIISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARLHILEKMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706


>gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
 gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
          Length = 714

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 431/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  INGQ+V+NP  ++ +Q  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + +        +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVHNACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ANYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPRPER 707


>gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 735

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/709 (40%), Positives = 429/709 (60%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+ Q+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDNQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMSEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D + ++  + FS E  +     I 
Sbjct: 239 VNDEELRKAVHDACYAKAYAIAASGNKNKHERMDAFDAICEEFKAQFSEEELAEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+  +
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GITA QMD+K  G++ +I+  AL QAK GR  
Sbjct: 477 AKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKCDGLTYDILEKALLQAKEGREF 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEEI 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  MI+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNVGRIEIAGTNKQCIDDAMRMIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+    +  +KEGD + VKLL+ D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLLEVDPKTGKFKLSRKVLLPKP 705


>gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
 gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
          Length = 716

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/711 (40%), Positives = 434/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  ING++V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMDEVSERDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + +      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVHDACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAPLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  ++G L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL+++++ ++E    L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILSKITECIAEPHADLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPKPER 707


>gi|187471099|sp|B0C1M5|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 716

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/702 (41%), Positives = 430/702 (61%), Gaps = 19/702 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V    I   GR +KL  GR A Q+ G VL   GET VL T     S ++G DF PL 
Sbjct: 1   MSEVI-KSISVDGREIKLTIGRFAPQAGGCVLIESGETSVLVTATRS-SGREGIDFLPLL 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+ER YA G++PGG+LRRE RP E   L  R+IDR +RPLF    +++ Q++   +  
Sbjct: 59  VDYEERLYAAGRVPGGFLRREGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISM 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D +  P V+++  AS A +L+ +PF+GP+   +V  +   +++NP  +E  +G LDL V+
Sbjct: 119 DEQVPPDVLAVTGASVATLLAKIPFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLVVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDS 234
           G+ D V+MVE  AN+++E  +++AI FG+     +I+A  +L      E +       D 
Sbjct: 179 GSPDGVIMVEAGANEVAEQDMIEAIDFGYEVVCDLIKAQKELIAELGIEQVEEAAPETDP 238

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------W 286
              + ++E ++  +K+ L  + F  +K VR   +D++K+ +         +         
Sbjct: 239 TLENFVQERVTDPVKDVL--ARFEKDKNVRDAALDEIKESVKVAIDELPETDPVQVAAVE 296

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGD 345
           N   I  VF+ I   ++R  +++ KVR+DGR  + VR IS  VG+L  R HGS LF RG 
Sbjct: 297 NPKAIGKVFKSITKTLMRRQVVEDKVRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGL 356

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + + TLGT  D Q +D L    +  ++ HYNF P + GE   M +P RRE+GHG LA
Sbjct: 357 TQVLSIATLGTPGDAQEMDDLHPDSQKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALA 416

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ P+LP   +FPY LR+VSE+  S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMG
Sbjct: 417 ERALLPMLPSKEEFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMG 476

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           L+K+G++  +L+DI G ED LG MDFKVAGT  GITA+QMDMKI G+S  ++  A+ QAK
Sbjct: 477 LIKEGEEVRVLTDIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLSMKVIAEAIHQAK 536

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             RLHIL++M   +   R  +  + PR+  + I P+QI  +IG GGK I+GI E+TGAK+
Sbjct: 537 PARLHILDKMLATIDSPRETMSPYAPRLLTIKIDPEQIGMIIGPGGKTIKGITEETGAKI 596

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I+DDG V I++        AR++I  +T       ++ G+V +++  GAFV    +++G
Sbjct: 597 DIEDDGRVTISAVDEKAASRARQIIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEG 656

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           ++HISQL+  RV K  D V  GD V VK+ + D+RG+I L+ 
Sbjct: 657 MIHISQLADYRVGKVEDEVTVGDEVVVKIRELDNRGRINLTR 698


>gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 720

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/711 (40%), Positives = 429/711 (60%), Gaps = 19/711 (2%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +  T  I+   GR + LETG++A+Q+DG+V+   G T++LATV   +  K   DF PL 
Sbjct: 1   MNPITKSIDLGDGRTITLETGKLAKQADGSVMLRMGNTMMLATVCAAKDAKPDVDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+  A G+ PGG+LRRE R ++ EIL+ R++DR++RPLF   Y  E  V + +   
Sbjct: 61  VEYKEKFAAFGRFPGGFLRREGRASDYEILVCRLVDRALRPLFPDDYHAEVFVNVTLFSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P  ++ +AASAAL +S +PF GP+   +V  ++GQ++LNP   + +Q  +D+ V 
Sbjct: 121 DGIDMPDALAGLAASAALAVSDVPFNGPISEVRVARVDGQFILNPTFAQVEQADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T D ++MVE E  ++SE  +L+AI   H   K   +A  +L +   K   V        
Sbjct: 181 ATIDNIMMVEGEFKEVSEAEMLEAIKVAHEAIKIQCQAQIELMEAVGKT--VKREYCHEV 238

Query: 240 LEEEMSQMIKEDLR------VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +EE+ + +            +     K+ R      +  +  +  + E  +     I  
Sbjct: 239 NDEELRKDVWAKCYDKAYAVAASANTNKHERGDNFAAIVDEYKAGLTEEELAEKGSLISR 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + D++ + +R  +LD+  R+DGR +  +R I ++V  L   HGS++F RG+TQ++  VT
Sbjct: 299 YYHDVEKEAMRRSILDEGKRLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DE+ +D +    +  F++HYNF P +TG+        RREIGHG LA RA+ P++
Sbjct: 359 LGTKLDEKIIDDVLNNGKERFLLHYNFPPFSTGDARPQRGVGRREIGHGNLAHRALKPMI 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV GIAMGL+ +  G 
Sbjct: 419 P--ANYPYVIRVVSDILESNGSSSMATVCAGTLALMDAGVQIKKPVTGIAMGLISEKKGT 476

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +F +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QA+ GRLHI
Sbjct: 477 NFAVLSDILGDEDHLGDMDFKVCGTKDGITATQMDIKVDGLSYEILEKALNQAREGRLHI 536

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-- 589
           + ++ + L E R    E  PR+E++ I  + I  VIG GGK+I+GI E+TGA V I++  
Sbjct: 537 MGKILETLPEPRADFKENAPRIEVIIINKEFIGAVIGPGGKIIQGIQEETGATVTIEEID 596

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V+I+++S   IEAA   I+ I  VPEV ++Y  +V  VM +GAF  F   +DGL+H
Sbjct: 597 GYGRVEISATSRTSIEAAVAKIKGIVAVPEVGEVYTAKVRSVMPYGAFCEFLPGKDGLLH 656

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           IS++S +R+       +KEGD + VKL+D D + GK KLS KV+     +P
Sbjct: 657 ISEISWDRIEDMEKAGLKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPPRP 707


>gi|298387792|ref|ZP_06997342.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
 gi|298259397|gb|EFI02271.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
          Length = 708

 Score =  713 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/711 (41%), Positives = 442/711 (62%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  D+ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 181 AATYDNIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGK--TVKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + ++E      +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVREACYDKAYAVAASGNNNKHERFDAFDAIREEFKAQFSEEELEEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D++    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VSEI ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+++++ ++E R  L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILDKITETIAEPRADLKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLMPRPEK 707


>gi|293373410|ref|ZP_06619765.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
           CMC 3f]
 gi|298482234|ref|ZP_07000421.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
 gi|292631548|gb|EFF50171.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
           CMC 3f]
 gi|295085266|emb|CBK66789.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens XB1A]
 gi|298271521|gb|EFI13095.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
          Length = 708

 Score =  713 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 442/711 (62%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 181 AATYENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGK--TVKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           ILN++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPEK 707


>gi|15639871|ref|NP_219321.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026109|ref|YP_001933881.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
           subsp. pallidum SS14]
 gi|81344924|sp|O83856|PNP_TREPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704828|sp|B2S4C3|PNP_TREPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3323203|gb|AAC26576.1| polyribonucleotide nucleotidyltransferase (pnp) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018684|gb|ACD71302.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060245|gb|ADD72980.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 702

 Score =  713 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/686 (41%), Positives = 437/686 (63%), Gaps = 4/686 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H++       PL LE+G +ARQ++G+V      T +LATV      ++G D+ PLTV++
Sbjct: 2   KHSITGTIGDHPLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVGK+PGG+++RE RP + EILISR+IDR +RPLF K +  +  V+   +  D+ 
Sbjct: 62  NEKYYAVGKMPGGFIKREGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSDMV 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
               V+++VA+SAA+ LS +PF GPV   +V Y+NG YV+NP   + D  S+++ V+GT+
Sbjct: 122 HPHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVAGTR 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-E 241
             + MVE  A ++SED++L A+       K + +   +L  +C KE   +       +  
Sbjct: 182 QGITMVEGGAREVSEDLMLGALEQAQEHIKALCDMQERLRGLCGKEKQTVIPSSAQLVGR 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-HSSWNEGEIVSVFEDIQA 300
           + + ++    L  + +   K  R    D +K+ +   ++++  +        ++F +++ 
Sbjct: 242 DRIYELAYPRLAQALYAQGKGERRSACDAVKRDVAQQYAAQLENDVQRRLFDALFHEMEY 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +++R  +LD+ +R+DGR  + +R I+ +VG+L R HGS++F RG+TQ++ VVTLG   D 
Sbjct: 302 EILRLNILDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDG 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  D + G +R +F++HYNF P + GE+ RMG   RREIGHG LA R++  V+P   QFP
Sbjct: 362 QVYDDIEGDRRENFILHYNFPPFSVGEIGRMG-VGRREIGHGCLAHRSLSAVIPDPEQFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEI ES+GSSSMATVC  +L+L+ AGVPI KPVAGIAMGL+ DG  + ILSDI 
Sbjct: 421 YTVRVVSEILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDIL 480

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+EDHLG MDFKVAGT  GIT  QMD+K+  +S ++M  ALQQA+ GRLHIL+ M++ +S
Sbjct: 481 GEEDHLGDMDFKVAGTCDGITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQTIS 540

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
              + +  + P +E   I  ++I  +IG GGK ++ + +Q    +N D DGTV ++    
Sbjct: 541 APSVHISRYAPHIESFKIAVEKIGALIGPGGKTVKSLSDQYRVTINTDSDGTVTVSGRDA 600

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +  A+  +  +T+ P V ++Y+G V ++++FGAFV     ++GL H+S+LS  RV+K 
Sbjct: 601 QSVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEIFPGKEGLCHVSKLSRSRVSKV 660

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLS 686
           SDV++EG  + VKL+D D  G++ LS
Sbjct: 661 SDVLQEGQRICVKLIDIDRMGRLNLS 686


>gi|113475234|ref|YP_721295.1| polynucleotide phosphorylase/polyadenylase [Trichodesmium
           erythraeum IMS101]
 gi|122965040|sp|Q115K2|PNP_TRIEI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110166282|gb|ABG50822.1| Polyribonucleotide nucleotidyltransferase [Trichodesmium erythraeum
           IMS101]
          Length = 717

 Score =  713 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/702 (40%), Positives = 425/702 (60%), Gaps = 19/702 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L+ G  A Q+ GAV+   G+T VL T    +  ++G DF PL V
Sbjct: 1   MEEIDKSISFDGRDIRLKVGLFAPQAGGAVMIESGDTAVLVTATTAK-GREGIDFLPLLV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ER YA GKIPGG+LRRE RP E   L SR+IDR +RPLF    +++ Q++   +  D
Sbjct: 60  DYEERLYAGGKIPGGFLRREGRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            E  P V+++  +S A++L+ LPF GP+   +V  +   +++NP   E   G LDL V+G
Sbjct: 120 EEVPPDVLAVTGSSVAVLLAKLPFYGPMAAVRVGLVGDDFIINPTYREVKNGDLDLVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSK 235
           +   V+MVE  ANQL E  +++AI FG+     +I+A  ++      E     P  +D  
Sbjct: 180 SPQGVIMVEAGANQLPEQDIIEAIDFGYEAVCDLIQAQREIIAEMGIELVELEPPEVDPT 239

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS---YFSSEHS-----SWN 287
             + ++E+ ++ IKE L    +  +K  R +++D++K  +         E +        
Sbjct: 240 LENYIKEKATEQIKEILSQ--YDLDKNQRDEKLDEIKDSLAESITELPEEEAVRAMVESE 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDT 346
              + + F+ +  K++R  ++ + +R+DGR  + VR +S +VG+L  R HGSSLF RG T
Sbjct: 298 SMLLGNAFKSVTKKLMRQQIVAEGIRVDGRKLDEVRPVSCRVGVLPSRVHGSSLFNRGLT 357

Query: 347 QAIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           Q +  VTLGT  D Q + D L       ++ HYNF P + GE   +  P RREIGHG LA
Sbjct: 358 QVMSAVTLGTPGDAQELADDLHPQDEKRYLHHYNFPPFSVGETKPLRQPGRREIGHGALA 417

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PV+P++  FPY +R+VSE+  S+GS+SM +VC S+L LMDAGVPI KPV+G AMG
Sbjct: 418 ERALIPVIPKSDIFPYVIRVVSEVLSSNGSTSMGSVCASTLGLMDAGVPIVKPVSGAAMG 477

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           L+K+ ++  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+   ++  A+ QAK
Sbjct: 478 LIKEDEEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPIEVIADAIHQAK 537

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             R+HIL++M  VL   R  +  + PR+    I P+ I  VIG GGK I+GI E+TG K+
Sbjct: 538 PARIHILDKMLSVLDLPRPDMSPYAPRLLSFKIDPEMIGLVIGPGGKTIKGITEETGVKI 597

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +IDDDGTV IA++   + + A  +I+ +T       +Y G+V +++  GAFV     ++G
Sbjct: 598 DIDDDGTVTIAAADGEKAKQACNIIQGMTKKLNPGDVYVGRVTRIIPIGAFVEVFAGKEG 657

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +VHISQ++  RV K  D +  GD V VK+ + D +G++ L+ 
Sbjct: 658 MVHISQIADYRVGKVEDELAIGDEVIVKVREIDSKGRVNLTR 699


>gi|150016092|ref|YP_001308346.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           beijerinckii NCIMB 8052]
 gi|187610256|sp|A6LSR0|PNP_CLOB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149902557|gb|ABR33390.1| Polyribonucleotide nucleotidyltransferase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 701

 Score =  713 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/703 (40%), Positives = 445/703 (63%), Gaps = 9/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +V  +  E AGR LK+E G++   S+ A   +YG+TV+L  V      ++G DFFPL+
Sbjct: 1   MNNV--LTTEIAGRELKVEFGKVGMLSNAATFTSYGDTVILTNVNASEQPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+ER YAVGKIPGG+++RE RP+E  IL  R +DR++RPLF K Y+N+ QV+  V+  
Sbjct: 59  VEYEERLYAVGKIPGGFIKREGRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVTTVVSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVS 179
           + ++ P ++++ AAS AL LS +P+  P    QV  I+G++V NP     ++  L L V 
Sbjct: 119 EKDNLPEILAINAASLALCLSSIPYTIPAAAVQVGIIDGKFVTNPDTQGREKSILHLTVC 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
            T++ V+M+E    ++ ED ++DAI +G +EC+ +I    +      K+           
Sbjct: 179 ATKERVMMIEAGGQEIPEDTMIDAIKYGFDECQKIIAFQEEAVAKFGKKKDEPVLYAVDP 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +LE+++ +   + ++ + +I EK  R   +D + +K+   F  +++    G+I  V   +
Sbjct: 239 ELEKDVKEFASDMIKEAMYIMEKDERNAAVDAVYEKVNEAFGEKYAD-KMGDIKEVLYTM 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q KVVR ++L  K R DGR  + +R +  ++G+L RTHG+ LF RG TQ + V TLG+  
Sbjct: 298 QKKVVRHMLLKDKRRPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVMTVATLGSIS 357

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D +   Q   +M HYNF   + GEV  +  P RREIGHG LA RA+ P++P   +
Sbjct: 358 EIQILDGIDEAQSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALEPLIPSEEE 417

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
           FPYT+R+VSE+  S+GS+S A+VCGS+LAL+DAGVPI +P AGIAMGL+   D  +  +L
Sbjct: 418 FPYTIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSEEAVL 477

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED  G MDFKVAGT  GIT++Q+D K+ G S N++  A++ A++ RL I+++++
Sbjct: 478 TDIQGIEDFFGDMDFKVAGTTEGITSIQVDTKLQGFSFNVVENAIRDARKARLTIIDKIN 537

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + +S  +  +  + P+ +IM+I PD+IR+VIG GGKVI  I++ TG K++I +DGTV ++
Sbjct: 538 ECISTPKEDVSLYAPKTQIMSINPDKIRDVIGAGGKVINKIIQDTGVKIDIKEDGTVFVS 597

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S+    +  A ++I  +T   +  ++Y G+V K+  FGAFV    +++GLVHIS+L+ ER
Sbjct: 598 STDHNGVNEAIKIIEGLTKEVKAGEVYLGKVTKITTFGAFVEILPSKEGLVHISKLAKER 657

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV--VDQNTGKP 697
           V K  DVV  GD + VK+ + D++G+I LS K   V+Q   + 
Sbjct: 658 VNKVEDVVSIGDEILVKVTEIDNQGRINLSRKDALVEQENKEE 700


>gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
 gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
          Length = 721

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/703 (42%), Positives = 423/703 (60%), Gaps = 18/703 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T       +DG DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRS-GGRDGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y+RRESRP E   L +R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYMRRESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A  +L K         E    DS   +
Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGITQVKPEQPDEDSTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGE 290
            LE++ ++ I   L    F   K  R   ++ +K ++   ++    +H+     + +   
Sbjct: 243 YLEKQCTKAISAVLSK--FDQSKDERDTALETVKGEVSETIAGLKEDHAVRQALASSPKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAI 349
           + + F+ +  K++R  +L    R+DGR  + VR ISA  G+L R  HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L       ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+S   +  A+ QA+  RL
Sbjct: 481 GDEVRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLSVKTVAEAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDTPRDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQ 703


>gi|237722890|ref|ZP_04553371.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
 gi|229447412|gb|EEO53203.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
          Length = 708

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 442/711 (62%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 181 AATYENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGK--TVKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREVCYDKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           ILN++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPEK 707


>gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
 gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
          Length = 714

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 430/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  INGQ+V+NP  ++ +Q  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFEQLEQADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMDEVSEQDLLEAMKAAHEAIKIQCKAQMELAEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + +        +         K+ R    D ++++  + FS E        I 
Sbjct: 239 VNDEELRKAVHNACYDKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELEEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IPV--NYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R  L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKITECIAEPREDLKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++YKG+V  +M +GAFV F   +DGL+
Sbjct: 597 DNIGRIEIAGTNKKSIDDAMRIIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLLDIDPKTGKFKLSRKVLLPRPER 707


>gi|238924296|ref|YP_002937812.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875971|gb|ACR75678.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
           33656]
          Length = 718

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/696 (39%), Positives = 421/696 (60%), Gaps = 9/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A Q++GAV   YG+T VL+T       +DG DFFPL+V ++
Sbjct: 25  KSYSMELAGRTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFE 84

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 85  EKMYSVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPEC 144

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+M+  + A+ +S +PF+GP    Q+  ++G++++NP   + D+G L L V+ T++
Sbjct: 145 RPEIVAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKE 204

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+M+E  AN++ ED +++AI   H+  + VI  + ++     K     +S    + + E
Sbjct: 205 KVIMIEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYESCAIPEQMFE 264

Query: 243 EMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           ++ +++  E +  + F  EK  R + I  + +++   F+          +       Q K
Sbjct: 265 DIKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFADNEEYL--AVLGEAIYQYQKK 322

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + Q
Sbjct: 323 TVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQ 382

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA +A+ PVLP   +FP
Sbjct: 383 KIDGLDANITTKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSIEEFP 442

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           YT+R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DDF++L+D
Sbjct: 443 YTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFLVLTD 502

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E MSK
Sbjct: 503 IQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMSK 562

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R ++ E+ P++E + I P +I +V+G  GK I  I+++TG K++I DDG V +  
Sbjct: 563 AIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAVSVCG 622

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I  A +MI+ IT   E  +I +G VV + +FGAF+ F   ++G+VHIS+++ ER+
Sbjct: 623 TDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIAKERI 682

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            +  DV+  GD V V  L  D  G+I  SMK V ++
Sbjct: 683 NRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 718


>gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 711

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/694 (42%), Positives = 435/694 (62%), Gaps = 10/694 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + LETG++A+Q+DG+V+   G T++LAT+V  +  KDG DF PLTV+Y+E+  A G
Sbjct: 14  DGREITLETGKLAKQADGSVVVKCGGTMLLATIVSSKEAKDGIDFLPLTVDYREKFAANG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           ++PGG+L+RE RP++NE+L  R+IDR +RPLF K Y  E Q++I ++ +D       ++ 
Sbjct: 74  RVPGGFLKREGRPSDNEVLTMRLIDRVLRPLFPKDYHAEIQLMIQMISYDENVEATSLTG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
           +AASAA+ +S LPF+GP+   +V  ING++V+NP   +  +  LD+ +  + D+V+MVE 
Sbjct: 134 LAASAAIAVSDLPFDGPISEVRVGRINGEHVINPTPAQIGELELDMVIGASMDSVVMVEG 193

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS---KDFSKLEEEMSQM 247
           E  ++SE+ +++AI + H+  K  IEA  +LA    K     +        ++ EE+   
Sbjct: 194 EMQEISEEEMVEAIKYAHDAIKVQIEAQLRLASHVEKAQTKREYSHETHNEEVREEVMAA 253

Query: 248 IKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
             + +   +     K+ R      +  + +     E  S N G   + F D++ K +R +
Sbjct: 254 TYDKVYEVAKSGLPKHERSAGFKAILNEYLEGKDEEWLSANTGFAKTYFHDVEYKAMRDM 313

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L+   R+DGR +  VR I ++V  L   HGS++F RG+TQ++  VTLGT  D   +D  
Sbjct: 314 VLNDGQRLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTSLDANRIDDA 373

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           + T    F +HYNF P +TGE   +   SRREIGHG LA+RA++ ++      P+T+R+V
Sbjct: 374 TFTGEEKFYLHYNFPPFSTGEARPIRGVSRREIGHGNLAQRALYQMVDPEN--PFTIRVV 431

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           S+I ES+GSSSMATVC  +LA+MDAGV + +PV+GIAMGL+ DG+ + +LSDI GDEDHL
Sbjct: 432 SDILESNGSSSMATVCAGTLAMMDAGVKMVRPVSGIAMGLISDGEKYAVLSDILGDEDHL 491

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKV GT+ GITA QMD+K+ G+S  I+V AL+Q+  GRLHIL EM K + E+R +L
Sbjct: 492 GDMDFKVTGTEKGITACQMDIKVKGLSYEILVKALKQSLEGRLHILGEMLKTMPETRTEL 551

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSSLAEI 603
               P++  + +  + I  +IG GGK I+GI   TG  V I   DD G V+I+    A +
Sbjct: 552 KPNAPKIYKLTVKKEFIGPIIGPGGKNIQGIQADTGTTVTISEVDDRGHVEISGKDAAMM 611

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A EMIR+I   PE+ ++Y+G V  V  +GAFV       GL+HIS++   R+    DV
Sbjct: 612 DKALEMIRAIAFEPEIGEVYEGIVRGVQTYGAFVEIAPKVQGLLHISEIDWTRIKNVEDV 671

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +KEGDTV VKLL+ D  GK+KLS KV+     K 
Sbjct: 672 LKEGDTVKVKLLEVDKAGKMKLSRKVLLPKPEKD 705


>gi|291525068|emb|CBK90655.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale DSM
           17629]
          Length = 696

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/696 (39%), Positives = 421/696 (60%), Gaps = 9/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A Q++GAV   YG+T VL+T       +DG DFFPL+V ++
Sbjct: 3   KSYSMELAGRTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 63  EKMYSVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+M+  + A+ +S +PF+GP    Q+  ++G++++NP   + D+G L L V+ T++
Sbjct: 123 RPEIVAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+M+E  AN++ ED +++AI   H+  + VI  + ++     K     +S    + + E
Sbjct: 183 KVIMIEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYESCAIPEQMFE 242

Query: 243 EMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           ++ +++  E +  + F  EK  R + I  + +++   F+          +       Q K
Sbjct: 243 DIKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFADNEEYL--AVLGEAIYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQ 360

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA +A+ PVLP   +FP
Sbjct: 361 KIDGLDANITTKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSVEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           YT+R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DDF++L+D
Sbjct: 421 YTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E MSK
Sbjct: 481 IQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R ++ E+ P++E + I P +I +V+G  GK I  I+++TG K++I DDG V +  
Sbjct: 541 AIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAVSVCG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I  A +MI+ IT   E  +I +G VV + +FGAF+ F   ++G+VHIS+++ ER+
Sbjct: 601 TDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIAKERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            +  DV+  GD V V  L  D  G+I  SMK V ++
Sbjct: 661 NRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 696


>gi|229827407|ref|ZP_04453476.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
           49176]
 gi|229788345|gb|EEP24459.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
           49176]
          Length = 697

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/697 (39%), Positives = 416/697 (59%), Gaps = 11/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  +E AGR L ++  R+A+Q++GA L  YG+TVVL+T       ++G DFFPL+
Sbjct: 1   MF--KSFSMELAGRTLTVDVDRVAKQANGAALMHYGDTVVLSTCTASEKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKQYAVGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D   SP + +M+ ++ A  +S +PF+GP    QV  I+G++V+NP   E   S L L V+
Sbjct: 119 DPTCSPELTAMLGSAIATAISDVPFDGPCATTQVGLIDGEFVINPSNAEMANSALKLTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
            T++ V+M+E  A+++ E  +++AI   H   + +I  I K+   C K     +      
Sbjct: 179 STKEKVIMIEAGADEIPEAKMIEAIYKAHEVNQEIIVFIEKIVAECGKPKSEYERYAVPE 238

Query: 239 KLEEEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L   + +++  +++  + F  EK +R + I  +  K+  +F+      +   +      
Sbjct: 239 ELFTAIKEIVTPDEMEKAVFTDEKQIREENISAIMDKLTEHFAENEEWLS--FLPDAVYQ 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L    R DGR+   +R ++A+  ++ R HGS++F RG TQ   + TL   
Sbjct: 297 YQKKTVRKMILKDYKRPDGREMTQIRALAAETDIIPRVHGSAMFTRGQTQICNITTLAPL 356

Query: 358 EDEQYVDSLSGTQR-NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q VD L+  +    ++ HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 357 SEVQKVDGLNAEETYKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSE 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV     DD++
Sbjct: 417 EEFPYAIRTVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGDTDDDYV 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + K  R+ I++ 
Sbjct: 477 LLTDIQGLEDFFGDMDFKVTGTTDGITAIQMDIKIHGLTREIVEGAIARTKEARMFIMDT 536

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M   ++E R  + E+ P++E + I PD+I  V+G  GK I  I+++TG K++I D+G V
Sbjct: 537 CMKPAIAEPRASVNEYAPKIEQIKIDPDKIGEVVGQKGKTINAIIDKTGVKIDITDEGNV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I  + + +I  A+E+IR I    E  KIY G+V+ + +FGAFV F   ++G+VHIS+++
Sbjct: 597 SICGTDIDKINEAKEIIRMIVTEFEEGKIYTGKVISIKEFGAFVEFAPGKEGMVHISKVA 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            ER+    DV+  GD V    L  D  G+I  S+K V
Sbjct: 657 KERINNVEDVLTLGDIVKTICLGKDKMGRISFSIKDV 693


>gi|284992338|ref|YP_003410892.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
           obscurus DSM 43160]
 gi|284065583|gb|ADB76521.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
           obscurus DSM 43160]
          Length = 762

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/704 (41%), Positives = 417/704 (59%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +  ETGR+A+Q+ G+V+ T G+T++L+     R  K+  DFFPLTV+ +ER YA 
Sbjct: 33  FGSRTITFETGRLAKQAAGSVVVTMGDTMLLSATTAGRQPKEHFDFFPLTVDVEERMYAA 92

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+I V+  D +    V++
Sbjct: 93  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFAKGLRNEVQVVITVLSLDPDHLYDVLA 152

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QDA 184
           +  ASA+  LSGLPF GPV G +V  +NGQ+V  P   E +    D+ V+G        A
Sbjct: 153 INGASASTQLSGLPFSGPVGGTRVALVNGQWVGFPTHAELEDAVFDMVVAGRVLPDGDVA 212

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA +             +E+VV   +       K + EA S LA+  AK     
Sbjct: 213 IMMVEAEATEKTIELVAGGATAPTEEVVAQGLEAAKPFIKALCEAQSALAEKAAKPVADF 272

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P  +D +D   +   +       L     I  K  R    D+LK   V+  +       E
Sbjct: 273 PRFLDYQD--DVYAAVESHAGARLAEVQAIAGKQERNDATDELKDGTVAALAGRFEG-RE 329

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +  KVVR  +L  KVR+DGR    +R +SA+V +L R HGS+LF RG+TQ 
Sbjct: 330 KEVSAAFRALTKKVVRQRILRDKVRIDGRGLTDIRPLSAEVEVLPRVHGSALFERGETQI 389

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 390 LGVTTLNMLRMEQQLDTLSPVNRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 449

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGLV 
Sbjct: 450 LLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAMGLVS 509

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL QA
Sbjct: 510 DEVDGKTEYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAQALTQA 569

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +  RLHIL+ M++ +     ++  + PRV  + IP D+I  VIG  G++I  I ++TGA 
Sbjct: 570 RAARLHILDVMNEAIDAP-DEMSPYAPRVTTVRIPVDKIGAVIGPKGQMINAIQDETGAD 628

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           + I+DDGT+ + +S     +AA + I +I    +P+V + + G VVK   FGAFV     
Sbjct: 629 ITIEDDGTIYVGASDGPSAQAAVDRINAIANPQMPKVGERFLGTVVKTTPFGAFVSLLPG 688

Query: 643 RDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGLVHIS+L   +R+ K  DVV  GD + V++ D D RGKI L
Sbjct: 689 KDGLVHISKLGGGKRIGKVEDVVNVGDKLQVEITDIDARGKISL 732


>gi|291519474|emb|CBK74695.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 693

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/698 (39%), Positives = 425/698 (60%), Gaps = 15/698 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T  ++ AGR L+++ GR+A Q++GA    YG+T VL+T       +DG DFFPL+V +
Sbjct: 1   MKTFTMDLAGRTLRVDIGRVAAQANGAAFIQYGDTTVLSTATASDKPRDGIDFFPLSVEF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+TYAVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 61  EEKTYAVGKIPGGFNKREGKASENSVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDPQ 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P +V+M+ A+ A  +S +PF+GP    Q+  I+G++++NP  ++ D+G L L V+ T+
Sbjct: 121 CRPELVAMLGAAIATCISDIPFDGPCAMTQMGMIDGEFIVNPSQEQWDKGDLKLTVASTR 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDF 237
           + V+M+E  AN + ED +++AI   H+  + VI  I ++ K C K         I  + F
Sbjct: 181 EKVIMIEAGANIIPEDKMIEAIYKCHDVNQTVIAFIDEMVKECGKPKHEYTSCAIPEELF 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +K++E +      ++  + F  EK VR + I  + +++   F+   +      +      
Sbjct: 241 AKMKEIVPPA---EMEEAVFTDEKQVREENIRQITERLEEAFAE--NEEWLAVLGEAIYQ 295

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            + K VR ++L    R DGR+   +R ++A+V ++ R HGSS+F RG TQ   VVTL   
Sbjct: 296 YEKKTVRKMILKDHKRPDGREITQIRPLAAEVDIIPRVHGSSMFTRGQTQICDVVTLAPL 355

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 356 SEAQKIDGLDAFVTEKRYMHHYNFPAYSVGETKPSRGPGRREIGHGALAERALLPVLPTP 415

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DDF+
Sbjct: 416 EEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFV 475

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  R  I++ 
Sbjct: 476 LLTDIQGLEDFFGDMDFKVTGTKEGITAIQMDIKIHGLTRPIVEGAIARCREARFFIMDN 535

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R Q+GE+ P++  ++I P++I +V+G  GK I  I+ +   K++I DDG V
Sbjct: 536 CMSKAIAEPRPQVGEYAPKIIQLSIDPEKIGDVVGQRGKTINEIIARCDVKIDITDDGNV 595

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I  +  A+++ A+ MI  IT   E ++I  G+VV + +FGAF+ F   ++G+VHIS+++
Sbjct: 596 SICGTDAAKMDEAKRMIEIITTDFEKDQILTGKVVSIKEFGAFIEFAPGKEGMVHISKIA 655

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            ER+ +  DV+  GDTV V  L  D  G+I  S+K V 
Sbjct: 656 KERIDRVEDVLTLGDTVKVVCLGKDKMGRISFSIKDVQ 693


>gi|260175214|ref|ZP_05761626.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. D2]
 gi|315923445|ref|ZP_07919685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
 gi|313697320|gb|EFS34155.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
          Length = 708

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 440/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 181 AATYENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGK--TVKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYEKAYAVAASGNNNKHERFAAFEAIREEFKAQFSEEELDEKGALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDNAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDVDQKTGKFKLSRKVLMPRPEK 707


>gi|194476549|ref|YP_002048728.1| polyribonucleotide nucleotidyltransferase [Paulinella
           chromatophora]
 gi|171191556|gb|ACB42518.1| polyribonucleotide nucleotidyltransferase [Paulinella
           chromatophora]
          Length = 724

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/714 (41%), Positives = 431/714 (60%), Gaps = 22/714 (3%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T+    S ++G DF PLT +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQASGSVLVECGDTAVLVTITRSNS-REGVDFLPLTCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE+RP E  ILI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRRENRPPERAILIARLIDRPMRPLFPSWMRDDIQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V++   AS A +++ +PF GP+   +V  +   ++LNP   E ++  LDL V+GT D
Sbjct: 123 PPDVLAATGASIATLIAKIPFHGPMATVRVGLLGDDFILNPSYREIERSDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-----AKMCAKEPIVIDSKDFS 238
            V+MVE  ANQL+E  V++AI FG+     +I+A +K+      +    E  V DS  F+
Sbjct: 183 GVVMVEAGANQLAEQDVIEAIDFGYEAVVELIKAQNKILQDMGIEYVKPEERVEDSTVFN 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY---FSSEH-----SSWNEGE 290
            LE E S+ I + L    +   K  R  Q+D +K ++         +      ++ N   
Sbjct: 243 YLERECSKAIIDVLGQ--YGKTKKERDSQLDTVKLQIGEKINSLKEDDTVRVAANTNAKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
             S ++++  K++R +++D   R+DGR    +R I + VG+L  R HGSSLF RG TQ +
Sbjct: 301 FNSSYKNLTKKIMRGLIVDTGKRIDGRSLSEIRPIISSVGILPKRVHGSSLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPATEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGVLAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SM  VC  +LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 APVLPDKENFPYVLRVVSEVLSSNGSTSMGAVCSGTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++  IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+    +  A+ QA+  RL
Sbjct: 481 GEEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKMTGLEMETIAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + + + R  L    PR+    I  + I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDKPREVLSPHAPRLLSFRIDSELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      + ++G V +++  GAFV     ++G++HI
Sbjct: 601 GGVVTIASHDGAAAEEAQRIIEGLTRRVSEGETFQGAVTRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN----TGKPIV 699
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+    T +PIV
Sbjct: 661 SQLSESRVEKVDDVVKVGDKVTVRVREIDNRGRINLTLRGVPQDNSHSTQEPIV 714


>gi|257413916|ref|ZP_04744667.2| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           L1-82]
 gi|257201810|gb|EEV00095.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           L1-82]
          Length = 719

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/696 (39%), Positives = 412/696 (59%), Gaps = 15/696 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+  Q++GA L  YGET VL+T       +DG DFFPL+V Y+
Sbjct: 25  KSFSMELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYE 84

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 85  EKMYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPEC 144

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183
            P VV+M+ ++ A+ +S +PF GP    Q+  ++G++++NP     D G L L V+ T +
Sbjct: 145 RPEVVAMIGSALAVTISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGDLQLTVASTAE 204

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFS 238
            V+M+E  AN++ E+ +++AI   H+  + +I  I+ + +   K         I  + F+
Sbjct: 205 KVIMIEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTSCAIPEEMFA 264

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++E ++    E +  + F  EK  R + I ++  K+   F+   +      +       
Sbjct: 265 AIKEIVTP---EQMEEAVFTDEKQKREENIREITDKLAEAFA--DNEEWLAVLGEAVYQY 319

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    
Sbjct: 320 QKKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLS 379

Query: 359 DEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        ++  YNF   + GE      P RREIGHG LA +A+  VLP   
Sbjct: 380 EVQKIDGLDENITTKRYIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 439

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     DD+++
Sbjct: 440 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 499

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ +A+  R++I++E 
Sbjct: 500 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 559

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK + E R ++  F P++  + I PD+I +V+G  GK I  I+++TG K++I DDG V 
Sbjct: 560 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 619

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    +  A EMI+ IT      +I+ G VV + +FGAFV F   ++G+VHIS++S 
Sbjct: 620 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 679

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ER+ +  DV+  GD V V  L  D  G+I  SMK V
Sbjct: 680 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDV 715


>gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107]
 gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107]
          Length = 721

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/704 (41%), Positives = 421/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T     S +DG DF PL  +Y+
Sbjct: 4   KTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRS-SGRDGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y+RRE+RP E   L  R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYMRREARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-----AKMCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+   + +I+A   L      K    E    D+   +
Sbjct: 183 GVVMVEAGANQLPEQDVIEAIDFGYEAIQELIKAQETLLKDLGIKQVKPEAPKEDTTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEHS-----SWNEGE 290
            LE++ ++ I   L    F   K  R   ++ +K    + ++    + +     S +   
Sbjct: 243 YLEKQCTKAISAVLSK--FEQSKEERDNGLEAVKVSAAEAIAALKEDDAVRQAVSSSSKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAI 349
           + + F+ +  K++R  +L    R+DGR  + VR ISA  G+L R  HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L       ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G D  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+   ++  A+ QA+  RL
Sbjct: 481 GKDIKILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKVVADAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDTPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEMFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9303]
 gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 721

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/707 (41%), Positives = 423/707 (59%), Gaps = 18/707 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     + ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMMECGDTSVLVTATRS-TGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLLAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+     +I+A   + K         EP   D+K  +
Sbjct: 183 GVVMVEAGANQLPEGDVIEAIDFGYEAVCELIKAQQSILKDAGIKQVQPEPPTQDTKLST 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY---FSSEHS-----SWNEGE 290
            LE+  S+ I E L+   F   K  R  ++D +K K          + +     + N   
Sbjct: 243 YLEKNCSKSIGEVLKQ--FEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANSKV 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++ +  R+DGR  + VR I++  G+L  R HGS LF RG TQ +
Sbjct: 301 LSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRTITSAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M +P RRE+GHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPPKDTFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             +  IL+DI G ED LG MDFKVAGT  GITA+QMDMKI G+    +  A+ QA+  R+
Sbjct: 481 DAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPARI 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDAPRTSLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  EAA+ +I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFSGTITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN  +
Sbjct: 661 SQLSEARVEKVDDVVKVGDEVTVRIREIDNRGRINLTLRGVPQNGEE 707


>gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 630

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/622 (50%), Positives = 433/622 (69%), Gaps = 3/622 (0%)

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+    +  P + +M
Sbjct: 1   KIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAM 60

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVE 189
           +  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V+GT +AVLMVE
Sbjct: 61  IGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVE 120

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLEEEMSQMI 248
            EA +L+ED +L A++F H+E + VI AI +LA   AK       K + + L   +    
Sbjct: 121 SEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEATALLGAIRAEF 180

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
            + +  +  I  K  R  ++ +LK ++V+  + E  S + GE+ + F +I+ + VR  ++
Sbjct: 181 GDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSAGEVKAAFGEIEYRTVRENIV 240

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           + K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L G
Sbjct: 241 NGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEG 300

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +LP    FPYT+R+VSE
Sbjct: 301 EKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSE 360

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           ITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ F IL+DI GDEDHLG 
Sbjct: 361 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGD 420

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL +M++++ +SR +L  
Sbjct: 421 MDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSA 480

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG++KI   S    EAAR+
Sbjct: 481 NAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAARQ 540

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS LS  RV K +D++KEG+
Sbjct: 541 RVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGE 600

Query: 669 TVWVKLLDFDDRGKIKLSMKVV 690
            V V +LD D+RG+IKLS+K V
Sbjct: 601 EVEVLVLDVDNRGRIKLSIKDV 622



 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 129/354 (36%), Gaps = 49/354 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-----DGQDFFPLTVNYQER 66
           RPL +E G + + + G+ L T GET  L        R  +     +G+   P  ++Y   
Sbjct: 255 RPLNIEVGVLPK-THGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 313

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R       EI   R+  RS++ +      +    +V+  + + +  S
Sbjct: 314 PFSVGECG-----RMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSS 368

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVS 179
           S  + S+  AS ALM +G+P + PV G  +  +  G+           ++  G +D  V+
Sbjct: 369 S--MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVA 426

Query: 180 GTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           GT   V  ++++     ++E+++  A+         ++  ++++      E         
Sbjct: 427 GTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPT-- 484

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRC------KQIDDLKKKMVSYFSSEHSSWNE--G 289
                           ++  I    +R         I  + ++  +    E     +  G
Sbjct: 485 ---------------MIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 529

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           E     E  + +V+      +  ++     E + D  A V +L    G      
Sbjct: 530 ESKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISM 583


>gi|186683767|ref|YP_001866963.1| polynucleotide phosphorylase/polyadenylase [Nostoc punctiforme PCC
           73102]
 gi|226702669|sp|B2J2V3|PNP_NOSP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186466219|gb|ACC82020.1| 3' exoribonuclease [Nostoc punctiforme PCC 73102]
          Length = 718

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/697 (41%), Positives = 423/697 (60%), Gaps = 19/697 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRS-QAREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ Q+I   +  D    P
Sbjct: 65  LYAAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+   V
Sbjct: 125 DVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L          + P  +D    + +
Sbjct: 185 IMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQQDLVAELGLVIVQEAPPEVDQTLENYI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIV 292
            +  S  IK+ L    F   K  R   +D +K ++   +     E       + N   + 
Sbjct: 245 RDRASGQIKKILSQ--FTFTKPERDAALDVVKDEIATTIKELPEEDPIRVAATANNKALG 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
           + F+DI    +R  +++  VR+DGR  + VR +S  VG+L  R HGS LF R  TQ +  
Sbjct: 303 NTFKDITKYFMRRQIIEDNVRVDGRKLDEVRRVSCLVGVLPKRVHGSGLFNRELTQVLST 362

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            TLGT  D Q + D +   Q   ++ HYNF P + GE   M +P RREIGHG LA R++ 
Sbjct: 363 CTLGTPGDAQNLNDDMQLDQHKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERSLI 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   QFPY +RIVSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+KDG
Sbjct: 423 PVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKDG 482

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A+ QAK  RLH
Sbjct: 483 DEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKIPGLSLDVISQAVHQAKAARLH 542

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M   +   R++   + PR+  + I  D I  VIG GGK I+GI E+TGAK++I+DD
Sbjct: 543 ILEKMLACIDTPRIETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIEDD 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV I++    + + AR +I+ +T       +Y G++ +++  GAFV F   ++G++HIS
Sbjct: 603 GTVTISAVDENKAKRARNIIQGMTRKLHEGDVYAGRITRIIPIGAFVEFLPGKEGMIHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D V  GD V +K+ + D++G+I L+ 
Sbjct: 663 QLADYRVGKVEDEVAVGDEVIIKVREIDNKGRINLTR 699


>gi|237713950|ref|ZP_04544431.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
 gi|262409141|ref|ZP_06085685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
 gi|294647465|ref|ZP_06725048.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
           2a]
 gi|294808931|ref|ZP_06767656.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229446106|gb|EEO51897.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
 gi|262352888|gb|EEZ01984.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
 gi|292637175|gb|EFF55610.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
           2a]
 gi|294443866|gb|EFG12608.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 708

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/711 (40%), Positives = 442/711 (62%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    +  
Sbjct: 181 AATYENIMMVEGEMHEVSEAELLEAMKVAHEAIKIHCKAQMELTEEVGK--TVKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + ++++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEVIREEFKAQFSEEELDEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDDVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYDILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           ILN++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILNKITETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 DGMGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPEK 707


>gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9301]
 gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 721

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/709 (40%), Positives = 431/709 (60%), Gaps = 18/709 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L TG  A Q++G+V+   G+T +L T     + K+  DF PL  
Sbjct: 1   MEGQNKSITFDGREIRLTTGLYAPQANGSVMIECGDTSLLVTAT-KTTKKEVSDFLPLIC 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+ YA G+IPGG++RRE RP E   LISR+IDR +RPLF    ++E Q++ + +  D
Sbjct: 60  DYEEKLYAAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
                 ++++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G
Sbjct: 120 ERVPADILAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           +++ ++M+E  ANQLSE   ++AI FG+     +I++   L K    + +     +  K 
Sbjct: 180 SKEGIVMIEAGANQLSEQDTIEAIDFGYEAVSELIKSQEDLLKDLGIKQVKPSEPEEDKT 239

Query: 240 ----LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWN 287
               LE+  ++ I+  L+   F   K  R  +++ +K +    +     ++      S N
Sbjct: 240 LPSFLEKNCTKPIELVLKK--FDLSKEERDLELEKIKVETQGKIESLKDDNQLKVLLSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDT 346
           +  + S F+ +  K++R+ +++   R+DGRD + VR ISA  G+L  R HGS+LF RG T
Sbjct: 298 DKLLSSDFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL
Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  +I+  A+++A+ 
Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARLHILEKMQEAIEKPQETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFPGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNGG 706


>gi|291458661|ref|ZP_06598051.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291419194|gb|EFE92913.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 701

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/694 (39%), Positives = 427/694 (61%), Gaps = 9/694 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+  Q++GA L  YGET VL++       +DG DFFPL+V Y+
Sbjct: 3   KSYSMELAGRTLTVDIGRVCAQANGAALMHYGETTVLSSCTASEKPRDGIDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGK PGG+ +RE+RP ++ IL  R+IDR +RPLF K Y+N+  +   V+  D + 
Sbjct: 63  EKMYAVGKFPGGFKKREARPADSAILTDRVIDRPMRPLFPKDYRNDVLLDNLVLSVDQDC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFVSGTQD 183
           SP +++M+ +S A  +S +PF+GP    QV  ING++++NP   ++    L L V+ T+D
Sbjct: 123 SPELLAMLGSSLAACISDVPFDGPCASTQVGMINGEFIMNPGNAEKTASDLLLTVASTRD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+M+E  AN++S++ +++AI   H   + +I     +   C K+     S    + L E
Sbjct: 183 KVIMIEAGANEISDEKMIEAIYLAHGLNQQIIGFFDSIIAECGKKKHEYVSCSIPETLFE 242

Query: 243 EMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            + +++ ++++  + F  +K  R + +  L +K+   FS +  + +   +       + K
Sbjct: 243 RIREIVPEKEMEKAVFADDKKERDENLSVLSQKLEGAFSEDEEALS--LLPEAIYQYEKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR  + +R + A+V L+ R HGS++F RG TQ + + TL    + Q
Sbjct: 301 TVRRMILKDHKRPDGRRIDEIRPLEAEVDLIPRVHGSAMFKRGQTQILNITTLAPLSEVQ 360

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            V+ L+       ++  YNF   + GE      P RREIGHG LA RA+ PVLP    FP
Sbjct: 361 KVEGLNEYETEKRYLHQYNFPGYSVGEARASRGPGRREIGHGALAERALLPVLPSVEDFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSD 478
           Y +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV  +  +D+++L+D
Sbjct: 421 YAIRSVSETMESNGSTSMASTCASCMSLMAAGVPIRKMVAGISCGLVTGESDEDYLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN-EMSK 537
           I G ED  G MDFKV GT  GITA+QMD+KI G++ +I+  A+++A   RL I++  M  
Sbjct: 481 IQGLEDFFGDMDFKVTGTREGITAIQMDIKIHGLTRDIVEEAIRRAHEARLFIMDGVMKS 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SE R +L  + P++  + I P++I +VIG  GKVI GI E+TGAK++IDD G + I+ 
Sbjct: 541 AISEPRKELSPYAPKIITLQINPEKIGDVIGKQGKVINGISEETGAKIDIDDSGMISISG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             LA +E A+ +I SI +  E  +I  G VV++M+FGAFV     +DG+VHIS+L+  RV
Sbjct: 601 IDLASLEKAKSIIESIVNDVEPGQIIDGTVVRIMNFGAFVQLSPNKDGMVHISKLADGRV 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            +  DVV+ GD V VK+L+ D  G+I L+M+ +D
Sbjct: 661 NRVEDVVQIGDKVRVKVLEIDKMGRINLTMRPMD 694


>gi|153806044|ref|ZP_01958712.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
 gi|149130721|gb|EDM21927.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
          Length = 708

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/711 (41%), Positives = 441/711 (62%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +   K   V    D  
Sbjct: 181 AATYENIMMVEGEMHEVSEAELLEAMKVAHEAIKVHCKAQMELTEEVGK--TVKREYDHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +E++ + ++E      +         K+ R    + + ++  + FS E        I 
Sbjct: 239 VNDEDLRKAVREACYDKAYAVAASGNNNKHERFAAFEAICEEFKAQFSEEELEEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D++    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R+VSEI ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ADYPYVVRVVSEILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+++++ ++E R  L E  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILDKIAETIAEPRADLKEHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAVITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++++ ++   I+ A  MI++I  VPEV ++YKG+V  +M +GAF+ F   +DGL+
Sbjct: 597 EGVGRIEVSGTNKKCIDDAMRMIKAIVAVPEVGEVYKGKVRSIMPYGAFIEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETVEEAGIKEGDEIDVKLIDIDPKTGKFKLSRKVLLPRPEK 707


>gi|291538574|emb|CBL11685.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 719

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/696 (39%), Positives = 411/696 (59%), Gaps = 15/696 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+  Q++GA L  YGET VL+T       +DG DFFPL+V Y+
Sbjct: 25  KSFSMELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYE 84

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 85  EKMYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPEC 144

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183
            P VV+M+ ++ A+ +S +PF GP    Q+   +G++++NP     D G L L V+ T +
Sbjct: 145 RPEVVAMIGSALAVTISDIPFAGPCAMTQMGMADGEFIINPSQKVWDTGDLQLTVASTAE 204

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFS 238
            V+M+E  AN++ E+ +++AI   H+  + +I  I+ + +   K         I  + F+
Sbjct: 205 KVIMIEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTSCAIPEEMFA 264

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++E ++    E +  + F  EK  R + I ++  K+   F+   +      +       
Sbjct: 265 AIKEIVTP---EQMEEAVFTDEKQKREENIREITDKLAEAFA--DNEEWLAVLGEAVYQY 319

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    
Sbjct: 320 QKKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLS 379

Query: 359 DEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        ++  YNF   + GE      P RREIGHG LA +A+  VLP   
Sbjct: 380 EVQKIDGLDENITTKRYIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 439

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     DD+++
Sbjct: 440 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 499

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ +A+  R++I++E 
Sbjct: 500 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 559

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK + E R ++  F P++  + I PD+I +V+G  GK I  I+++TG K++I DDG V 
Sbjct: 560 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 619

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    +  A EMI+ IT      +I+ G VV + +FGAFV F   ++G+VHIS++S 
Sbjct: 620 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 679

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ER+ +  DV+  GD V V  L  D  G+I  SMK V
Sbjct: 680 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDV 715


>gi|291529163|emb|CBK94749.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale
           M104/1]
          Length = 696

 Score =  710 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/696 (39%), Positives = 420/696 (60%), Gaps = 9/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+A Q++G V   YG+T VL+T       +DG DFFPL+V ++
Sbjct: 3   KSYSMELAGRTLTVDIGRVAAQANGTVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ Y+VGKIPGG+ +RE + +EN IL  R+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 63  EKMYSVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V+M+  + A+ +S +PF+GP    Q+  ++G++++NP   + D+G L L V+ T++
Sbjct: 123 RPEIVAMIGTALAVHISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGDLQLTVASTKE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEE 242
            V+M+E  AN++ ED +++AI   H+  + VI  + ++     K     +S    + + E
Sbjct: 183 KVIMIEAGANEIPEDQMIEAIYKCHDINQTVIAFMDQIRDEIGKPKHEYESCAIPEQMFE 242

Query: 243 EMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           ++ +++  E +  + F  EK  R + I  + +++   F+          +       Q K
Sbjct: 243 DIKKIVTPEQMEEAVFTDEKQKREENIRAITEQLEEAFADNEEYL--AVLGEAIYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQ 360

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        +M HYNF   + GE      P RREIGHG LA +A+ PVLP   +FP
Sbjct: 361 KIDGLDANITTKRYMHHYNFPAYSVGETKVSRGPGRREIGHGALAEKALVPVLPSVEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           YT+R VSE  ES+GS+SMA+ C S ++LM AGVPI   VAGI+ GLV     DDF++L+D
Sbjct: 421 YTIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKAMVAGISCGLVTGDTDDDFLVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E MSK
Sbjct: 481 IQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            ++E R ++ E+ P++E + I P +I +V+G  GK I  I+++TG K++I DDG V +  
Sbjct: 541 AIAEPRKEVNEWAPKIEQITIDPSKIGDVVGQKGKTINEIIDRTGVKIDITDDGAVSVCG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    I  A +MI+ IT   E  +I +G VV + +FGAF+ F   ++G+VHIS+++ ER+
Sbjct: 601 TDKEMIAKAIDMIKIITTDFEQGQILEGTVVSIKEFGAFIEFAPGKEGMVHISKIAKERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            +  DV+  GD V V  L  D  G+I  SMK V ++
Sbjct: 661 NRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDVKED 696


>gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9311]
 gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           CC9311]
          Length = 721

 Score =  710 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/704 (41%), Positives = 421/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T    +  +DG DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSK-GRDGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRESRP E   LI R+IDR +RPLF    +++ Q++   M  D   
Sbjct: 63  ERLYAAGRIPGSFMRRESRPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+ +PF GP+   +V  +   +VLNP   E ++G LDL V+GT  
Sbjct: 123 PADVLAVTGASMATLLAKIPFYGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPQ 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239
            V+MVE  ANQL E  V++AI FG+     +I+A   + K    E ++ ++ +  K    
Sbjct: 183 GVVMVEAGANQLPEGDVIEAIDFGYEAVSELIKAQQSILKEAGIEQVIPEAPEQDKTLPV 242

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK---KKMVSYFSSEHS-----SWNEGE 290
            LE+  S+ I E L    F   K  R +++D ++    + +             S N   
Sbjct: 243 YLEKACSKSIGEVLGQ--FEQTKAERDEKLDAIRSTTAETIQGLKDSDPVRVAVSANGKA 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + F+ +   ++R  +L    R+DGR+ + VR ISA  G+L  R HGS LF RG TQ +
Sbjct: 301 LPNSFKALTKTLMRQQILKDGKRVDGRNLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF   + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPSNEKTYLHHYNFPAYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 VPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GD+  IL+DI G ED L  MDFKVAGTD GITA+QMDMKI G+  +I+  A+ QA+  RL
Sbjct: 481 GDEVKILTDIQGIEDFLVDMDFKVAGTDKGITALQMDMKITGLPVSIVADAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+ I E+T  K++I+D
Sbjct: 541 HILEKMMEAIESPREGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKNITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFTGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|254880757|ref|ZP_05253467.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           4_3_47FAA]
 gi|294778033|ref|ZP_06743467.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           PC510]
 gi|319639767|ref|ZP_07994497.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
 gi|254833550|gb|EET13859.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           4_3_47FAA]
 gi|294448091|gb|EFG16657.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           PC510]
 gi|317388584|gb|EFV69433.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
          Length = 728

 Score =  710 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 433/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 18  MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 77

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 78  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFS 137

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 138 ADGIDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 197

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E  ++SE  +L A+   H   K   +A  +L +       V       
Sbjct: 198 AATYDNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVG--STVKREYCHE 255

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + ++E      +         K+ R    D ++ +  + ++ E        I 
Sbjct: 256 ENDEDLRKAVREACYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKGALID 315

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 316 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 375

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 376 TLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRALKGQ 435

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K+   
Sbjct: 436 IP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKNAGE 493

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR H
Sbjct: 494 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKEGREH 553

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I++ 
Sbjct: 554 ILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEET 613

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +DGL+
Sbjct: 614 DGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGKDGLL 673

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     K
Sbjct: 674 HISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVLLPRPEK 724


>gi|291536078|emb|CBL09190.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           M50/1]
          Length = 697

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/696 (39%), Positives = 412/696 (59%), Gaps = 15/696 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+  Q++GA L  YGET VL+T       +DG DFFPL+V Y+
Sbjct: 3   KSFSMELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183
            P VV+M+ ++ A+ +S +PF GP    Q+  ++G++++NP     D G L L V+ T +
Sbjct: 123 RPEVVAMIGSALAVTISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGDLQLTVASTAE 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDFS 238
            V+M+E  AN++ E+ +++AI   H+  + +I  I+ + +   K         I  + F+
Sbjct: 183 KVIMIEAGANEIPEEKMIEAIYKCHDVNQTIIAFINHIVEEVGKPKHEYTSCAIPEEMFA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            ++E ++    E +  + F  EK  R + I ++  K+   F+   +      +       
Sbjct: 243 AIKEIVTP---EQMEEAVFTDEKQKREENIREITDKLAEAFA--DNEEWLAVLGEAVYQY 297

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           Q K VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    
Sbjct: 298 QKKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLS 357

Query: 359 DEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           + Q +D L        ++  YNF   + GE      P RREIGHG LA +A+  VLP   
Sbjct: 358 EVQKIDGLDENITTKRYIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEE 417

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     DD+++
Sbjct: 418 EFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYLV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE- 534
           L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ +A+  R++I++E 
Sbjct: 478 LTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIGRAREARIYIMDEV 537

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           MSK + E R ++  F P++  + I PD+I +V+G  GK I  I+++TG K++I DDG V 
Sbjct: 538 MSKAIEEPRKEVSTFAPKIVQIQINPDKIGDVVGQRGKTINEIIDRTGVKIDITDDGAVS 597

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    +  A EMI+ IT      +I+ G VV + +FGAFV F   ++G+VHIS++S 
Sbjct: 598 VCGTDAEMMNKAIEMIKIITTDFAEGQIFTGTVVSIKEFGAFVEFAPGKEGMVHISKISK 657

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           ER+ +  DV+  GD V V  L  D  G+I  SMK V
Sbjct: 658 ERINRVEDVLTLGDKVKVVCLGKDKMGRISFSMKDV 693


>gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 638

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/638 (44%), Positives = 420/638 (65%), Gaps = 6/638 (0%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           +NY+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  
Sbjct: 1   MNYEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSA 60

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+
Sbjct: 61  DPDCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVA 120

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           G +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I ++   
Sbjct: 121 GHKDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDE 180

Query: 239 KLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSV 294
            L E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++
Sbjct: 181 ALVERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAI 240

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TL
Sbjct: 241 LNELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTL 300

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P
Sbjct: 301 GALGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIP 360

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
            TA FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + 
Sbjct: 361 DTADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYT 420

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N 
Sbjct: 421 ILTDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNH 480

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + + R +L  + P+V  M I PD+IR+VIG GGK I  I+++TG K++I+ DGT+ 
Sbjct: 481 MLQTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIF 540

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +   A I  ARE+I  IT   EV + Y+  V ++  +GAFV     +D L+HISQ+S 
Sbjct: 541 IGAVDQAMINRAREIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISK 600

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            R+ K  DV+K GDT+ VK+ + D +G++  S + +++
Sbjct: 601 NRIEKVEDVLKIGDTIEVKITEIDKQGRVNASHRALEE 638


>gi|150003997|ref|YP_001298741.1| polynucleotide phosphorylase/polyadenylase [Bacteroides vulgatus
           ATCC 8482]
 gi|187470937|sp|A6L0A5|PNP_BACV8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149932421|gb|ABR39119.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           ATCC 8482]
          Length = 711

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 433/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++ ++  +DL V
Sbjct: 121 ADGIDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E  ++SE  +L A+   H   K   +A  +L +       V       
Sbjct: 181 AATYDNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + ++E      +         K+ R    D ++ +  + ++ E        I 
Sbjct: 239 ENDEDLRKAVREACYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKGALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K+   
Sbjct: 419 IP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKEGREH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +DGL+
Sbjct: 597 DGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVLLPRPEK 707


>gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured
           Prochlorococcus marinus clone ASNC1363]
          Length = 721

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 428/709 (60%), Gaps = 18/709 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L TG  A Q+ G+V+   G+T +L T       K+  DF PL  
Sbjct: 1   MEGQNKSITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTATKTLK-KETSDFLPLIC 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+ YA G+IPGG++RRE RP E   LI+R+IDR +RPLF    ++E Q++ + +  D
Sbjct: 60  DYEEKLYAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
                 V+++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G
Sbjct: 120 ERVPADVLAVTGASIATLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD--- 236
           + D ++M+E  ANQLSE   ++AI FG+     +I++   L K    K+    D ++   
Sbjct: 180 SPDGIVMIEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLKDLGIKQNKPTDPEEDKT 239

Query: 237 -FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWN 287
             S LE+   + I  DL +  F   K  R  +++ +K +    +     ++      S N
Sbjct: 240 LPSYLEKNCGKAI--DLVLKKFDQSKEERDLELEKIKTEAQGKIDSLKDDNQVKVLTSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDT 346
           E  I S F+ +  K++R+ +++   R+DGRD + VR I+A   +L  R HGS+LF RG T
Sbjct: 298 EKLIHSDFKKLTKKLMRSQIINDGKRVDGRDLDEVRKITASASILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL
Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  +I+  A+++A+ 
Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARLHILEKMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706


>gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 719

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/709 (41%), Positives = 440/709 (62%), Gaps = 15/709 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M       I   G+ + +ETG++A+Q+DG+V+   G TV+LATVV     KDG DF PLT
Sbjct: 1   MNIGIKKSIVTGGKEISIETGKLAKQADGSVVLQMGNTVLLATVVAAPEAKDGVDFLPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ RRE+RP+E EIL+ R++DR++RPLF   Y  E Q++I ++ +
Sbjct: 61  VDYREKYAAAGRFPGGFFRREARPSETEILVMRLVDRALRPLFPDDYHAEVQLMIQLLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVS 179
           D  ++P  +  +AASAA+ +S +PF GP+   +V  ING++++NP ++E +   +D+ V+
Sbjct: 121 DGVNNPDALCGLAASAAIAVSDIPFNGPMSEVRVGRINGEWIVNPSMEEMKSADIDMMVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC--AKEPIVIDSKDF 237
           GT   V M+E E  ++SE  +++AI   H   K   +    LA +   A    V   +  
Sbjct: 181 GTMKDVNMIEGEFQEISELEMVEAIKIAHAAIKEQCQFQLDLAALIPTANPKRVYSHETH 240

Query: 238 SK-LEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
            + ++ ++ ++  +  +      +  K  R +  D +K ++ + FS E  +   G I + 
Sbjct: 241 DENVKAKVYELAMDKCKEVARQGLANKAKRTELFDAIKTEVKAAFSEEELATVSGFISTY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F +++ K VR VML+++ R+DGR  + +R I A+V  L   HGS++F RG+TQ++  +TL
Sbjct: 301 FSEVKKKAVRWVMLNEQKRLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G + DEQ +D ++      F++HYNF P +TGE   +   SRREIGHG LA RA+ PVLP
Sbjct: 361 GGKMDEQLIDGVTFHGTEKFLLHYNFPPFSTGEAKPLRGTSRREIGHGNLALRALKPVLP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
             A   YT+R+VS+I ES+GSSSMATVC  +LALMD GV I  PV+GIAMGLV D   F 
Sbjct: 421 --ADNAYTIRLVSDILESNGSSSMATVCAGTLALMDGGVQIKAPVSGIAMGLVADEGKFA 478

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+   +++ AL QA+ GR+HILN+
Sbjct: 479 VLSDILGDEDHLGDMDFKVTGTSKGITACQMDIKVDGLPYEVLIQALDQARAGRIHILNK 538

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD----D 590
           + + ++         TPR+E   +P D I  +IG GGK+I+GI + T   + I++    +
Sbjct: 539 IIETIAVPNPDFKPQTPRIEAFNVPNDMIGAIIGPGGKIIQGIQKDTKTTITIEELETGE 598

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G V+I S++  +++AA   IR I   P V++   Y+G+V  + DFG FV      DGL+H
Sbjct: 599 GRVQIMSNNAEDMDAANSRIRMIAFPPVVDEGAEYEGKVKAIKDFGVFVEILPGTDGLIH 658

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           IS+ S E+VAK  DVVKEGD +  K++  D +  K KLS +V+     K
Sbjct: 659 ISEFSWEKVAKMEDVVKEGDVLKFKVVGKDPKTKKWKLSRRVLLPRPEK 707


>gi|149276240|ref|ZP_01882384.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
 gi|149232760|gb|EDM38135.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
          Length = 715

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/706 (41%), Positives = 444/706 (62%), Gaps = 10/706 (1%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V     +   GR +++ETG++A+Q+DG+V+   G+T++LATVV     K G DF PL+
Sbjct: 1   MNVIKKSFDLGDGRTIEIETGKLAKQADGSVVVRMGDTMLLATVVSTVGAKSGVDFLPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+LRRE+R ++ E+LISR++DR++RP+F + Y ++TQV+I ++  
Sbjct: 61  VDYQEKYAAAGRIPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMITLISS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++ +AASAA+ +S +PF GP+   +V  I+GQ+V+NP + + +  +++  V+
Sbjct: 121 DKNIMPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGQFVINPYVSDLERATMEFLVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVIDSKD-F 237
           GT++ ++MVE EA+++SE  +++AI F H      ++A  +LA++  K E      +D  
Sbjct: 181 GTENDIVMVEGEADEISESDMVEAIEFAHKAIVVQVQAQKELAQLVGKTEKRAYSHEDSN 240

Query: 238 SKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            +L+E++     + +   +     K  R      +    ++    +            F 
Sbjct: 241 PELKEKVYAATYDKVYAIAKSNTSKGERGDAFGAVLMDFIATLGEDIDDVTGFLSKKYFH 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+Q   +R ++LD+ +R+DGRD  TVR I ++VG L   HGS++F RG+TQ++  VTLG+
Sbjct: 301 DVQYDAIRNLVLDEGIRLDGRDVRTVRPIWSEVGYLPSAHGSAVFTRGETQSLTTVTLGS 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ++DEQ +D       N F++HYNF   +TGEV       RREIGHG LA R++  VLP  
Sbjct: 361 KDDEQMIDGAFINGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGI 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            + PYT+RIVS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMGL+ D     + 
Sbjct: 421 EENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTGKYA 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT+ GI A QMD+KI G+   ++  AL QAK  RLHILNE
Sbjct: 481 ILSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNALNQAKEARLHILNE 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DG 591
           M K ++  R    +  PR+  ++I  + I  VIG GGK+I+ +  +TGA ++I++    G
Sbjct: 541 MKKTIAAPREDYKDHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGASISIEEVGNKG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V++ + + A I+AA   I +I   PE+  IY G+V  +M FGAFV     +DGL+HIS+
Sbjct: 601 IVEVFADNKASIDAAVARINAIAAKPEIGAIYDGKVKSIMPFGAFVEIMPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +   R+     V KEGD + VKLLD D +GK+KLS KV+     KP
Sbjct: 661 IDWTRLETMDGVFKEGDKLQVKLLDIDKQGKMKLSRKVLLPRPPKP 706


>gi|333029627|ref|ZP_08457688.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
           DSM 18011]
 gi|332740224|gb|EGJ70706.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
           DSM 18011]
          Length = 713

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/712 (39%), Positives = 438/712 (61%), Gaps = 20/712 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DGAV+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELGDGRTITLETGKLAKQADGAVMLRMGNTMMLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ RRE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V   +G++++NP  ++ ++  +D+ V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFHGPISEVRVARTDGKFIINPTFEQLEKADMDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +LA+       V    +  
Sbjct: 181 AATYENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQIELAEAVG--STVKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + + E      +         K+ R    + +K++  + F+ E     E  I 
Sbjct: 239 ENDEDLRKAVHEACYEKAYAVAASGNANKHERFDAFEAIKEEFKAQFTEEELEEKEALIN 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  VR I ++V  L   HGS++F RG+TQA+  V
Sbjct: 299 KYYHDVEKEAMRRSILDEGKRLDGRKTTQVRPIWSEVDCLPGPHGSAVFTRGETQALCTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RRE+GHG LA RA+  +
Sbjct: 359 TLGTKSDEKIIDDVLCHGKERFLLHYNFPPFSTGEARPQRGVGRREVGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R++S+I ES+GSSSMATVCG +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--ENYPYVIRVISDILESNGSSSMATVCGGTLALMDAGVQIKKPVSGIAMGLIKNPGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QAK GR+H
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSFDILEKALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL+++ + L   R  L    PR+E M IP + I  +IG GGK+I+ + E+TGA + I++ 
Sbjct: 537 ILDKILETLDAPRTDLKPHAPRIEKMTIPKEFIGAIIGPGGKIIQNMQEETGATITIEET 596

Query: 590 ---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
              +G+++I++++   I+ A  MI++I  VPEV ++Y G+V  +M +GAF+ F   +DGL
Sbjct: 597 EAGEGSIEISATNKKSIDDAVRMIKAIVAVPEVGEVYTGKVRSIMPYGAFIEFLPGKDGL 656

Query: 647 VHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           +HIS++   R+ K  D  + E D + VKL+D D + GK KLS KV+     +
Sbjct: 657 LHISEIEWRRLDKVEDAGIHENDEIEVKLIDIDRKTGKFKLSHKVLLPRPER 708


>gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina
           EX-H1]
 gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina
           EX-H1]
          Length = 709

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/692 (42%), Positives = 457/692 (66%), Gaps = 5/692 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  VE +    P+ +ETG  A+QS+GAV+   GET V    V     +   DF PLTV+Y
Sbjct: 9   VEKVETKIQETPISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDY 68

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+TYA GKIPGG+++RE +PT  EIL+SR+IDR IRP+F K + N+  +    +  D +
Sbjct: 69  REKTYAYGKIPGGFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDK 128

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
             P V+++V ASAAL ++  PFEGPV G +V  ++G++++NP  ++  +  +D+ V+GT+
Sbjct: 129 YDPDVLAIVGASAALHITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVVAGTK 188

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DA++MVE  + ++SE+V+LDAI+F H E K + +   +L     KE I ++  ++  +++
Sbjct: 189 DAIVMVEGGSEEVSEEVILDAILFAHEEIKKLCDLQEELRSKVGKEKITVEIDEEDERIK 248

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            E+  +++E ++ +  I +K  R K+I ++ ++ +     E     E +   ++++I + 
Sbjct: 249 AELESIVRESVKEAFNILDKKERNKRIKEIYEEAIQKI--EIPEEKEKKAEVIYKEIVSN 306

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG-TREDE 360
           ++R  +L +KVR+DGR  + +R I  + GL  R HGS++F RG TQA V  TLG   E++
Sbjct: 307 IMREKVLKEKVRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQ 366

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
                  G ++  FM+HYNF P +TGE     APSRREIGHG LA RAI P++P   +FP
Sbjct: 367 IEESIEEGEEKKRFMLHYNFPPFSTGEARPPRAPSRREIGHGNLAERAIEPLIPDEEEFP 426

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEI ES+GS+SMATVCG+SL+L DAGVP+ K VAGIAMGL+K+ DD++IL+DI 
Sbjct: 427 YVIRVVSEILESNGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYVILTDIL 486

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAGT  G+T++QMD+KI G+S+ I+  AL+QAK+ R+HIL+ M K + 
Sbjct: 487 GDEDHLGDMDFKVAGTRDGVTSIQMDIKIKGLSKEILQEALEQAKKARMHILDLMYKAMP 546

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + R +L    P+V  M + P++I  +IG  GK I+ I+++TG K+++D +G V+I +   
Sbjct: 547 QPRPELSPHAPKVITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQEGLVRIYAVDG 606

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              + A+EMI  +    E+ ++Y G+V +V D+GAFV     +  L+H+SQ+S ER+   
Sbjct: 607 ESADKAKEMIERLIMDIELGEVYMGKVTRVEDYGAFVELMPGKLSLLHVSQISPERIRSA 666

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            + +K GD + VK++D D+ G+ K+S+K V +
Sbjct: 667 KEKIKVGDILTVKVIDIDEMGRAKVSLKEVRE 698


>gi|22299736|ref|NP_682983.1| polynucleotide phosphorylase/polyadenylase [Thermosynechococcus
           elongatus BP-1]
 gi|81742443|sp|Q8DGW9|PNP_THEEB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22295920|dbj|BAC09745.1| polyribonucleotide nucleotidyltransferase [Thermosynechococcus
           elongatus BP-1]
          Length = 715

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/703 (41%), Positives = 433/703 (61%), Gaps = 18/703 (2%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           I   GR +K+   + A Q+ G++L + GET VL T       ++G DF PL V+Y+ER Y
Sbjct: 8   IPLDGRDIKVVLQKFAPQAAGSILISSGETAVLVTANRAA-AREGIDFLPLVVDYEERLY 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPGG+LRRE RP E  ILI R+IDR +RPLF +  +++ QV+   +  D  + P V
Sbjct: 67  AAGRIPGGFLRREGRPPEKAILIGRLIDRPLRPLFPQWLRDDLQVVATTVSLDENAPPDV 126

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           +++  AS A++L+ +PF GP+   +V  +  ++V+NP   E ++G LDL V+G+ D V+M
Sbjct: 127 LAVTGASIAVLLAQIPFNGPMAAVRVGLVGDEFVINPTYKEIERGGLDLVVAGSPDGVVM 186

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEE 242
           VE  AN+L E  +++AI F +   + +I+A   L K         EP  ID    + + +
Sbjct: 187 VEAGANELPEADMIEAIDFAYEVIRDLIQAQRDLLKELGIDIVRAEPPAIDPTLENFIYD 246

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIVSV 294
             ++ +K  L+   F  +K VR   +D+++  +   ++    +       + N   + ++
Sbjct: 247 RAAEPVKAILK--RFEKDKNVRDAALDEVQGAIAQEIAALPEDDPVAVAAAENPKALPTL 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R  ++++ VR+DGR  + VR I  +VG+L  R HGS+LF RG TQ + V T
Sbjct: 305 FKAVTKKLMRQQIIEEGVRVDGRRLDEVRPIWCEVGVLPERVHGSALFNRGLTQVMSVTT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  D Q +D L       ++ HYNF P + GEV  + +P RREIGHG LA RA+ PVL
Sbjct: 365 LGSPADAQALDDLHPEDSKRYLHHYNFPPYSVGEVKPLRSPGRREIGHGALAERALEPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+  SDGS+SM +VCGS+L+LMDAGVPI KPV+G AMGL+K+G++ 
Sbjct: 425 PPKEEFPYVIRVVSEVLSSDGSTSMGSVCGSTLSLMDAGVPIRKPVSGAAMGLIKEGNEV 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G+   ++  A++QA+  RLHIL 
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPVAVIQQAIEQARPARLHILE 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M  VL + R QL    PR+  + IPPD I  VIG GGK +RGI EQ   KV+I ++G V
Sbjct: 545 KMLAVLDKPRPQLPPSAPRLLTLQIPPDMIGLVIGPGGKTVRGISEQYNVKVDISEEGLV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +    + AR  I  +T       +Y G+V +++  GAFV     ++G++HISQL+
Sbjct: 605 TITAPNETNAKQARAAIEGLTRKLNAGDVYLGRVTRIIPIGAFVELLPGKEGMIHISQLA 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             RV K  D VK GD + VK+ + D +G+I L+   +  +  +
Sbjct: 665 EYRVGKVEDEVKIGDEIVVKIREVDSKGRINLTRLGIHPDEAE 707


>gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
 gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
          Length = 729

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/705 (40%), Positives = 432/705 (61%), Gaps = 19/705 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DGAV    G TV+LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGAVTLRMGNTVLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+G++V++P  ++ +Q  +DL V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGKFVIDPTFEQLEQADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +       V       
Sbjct: 181 AATYENIMMVEGEMDEVSEQDLLEALKAAHEAIKVHCKAQMELMEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + + E      +         K+ R      +  +  + FS E        I 
Sbjct: 239 ENDEDLRKAVHEACYDKAYAIAQSGNKNKHEREDAFTAICDEFKAQFSEEELEEKGPMID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKADEKVVDDVLDQHKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PY +R++S+I ES+GSSSMATVC  +LALMDAGVPI  PV+GIAMGL+K+   
Sbjct: 419 IP--AGYPYCVRVMSDILESNGSSSMATVCAGTLALMDAGVPIKNPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + +LSDI GDEDHLG MDFKV GT +GITA QMD+K  G++ +I+  AL QAK GR +
Sbjct: 477 DKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKCDGLTYDILEKALLQAKEGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++++ ++E R +L    PR+E M IP + I  VIG GGK+I+G+ E+TGA ++I++ 
Sbjct: 537 ILGKLTECIAEPRPELKPNAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGAIISIEEI 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  MI+SI  +PE+ ++Y G+V  +M +GAFV F   +DGL+
Sbjct: 597 DGVGRIEIAGTNKKCIDDAVRMIKSIVAIPEIGEVYTGKVRSIMPYGAFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           HIS++  +R+    +  +KEGD + VKL+D D + GK KLS KV+
Sbjct: 657 HISEIDWKRLETIEESGLKEGDEIQVKLMDIDPKTGKFKLSHKVL 701


>gi|308233974|ref|ZP_07664711.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
 gi|328944017|ref|ZP_08241482.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
 gi|327491986|gb|EGF23760.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
          Length = 751

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/706 (40%), Positives = 423/706 (59%), Gaps = 17/706 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             + E +   +  KLE+G +A+Q+ G  L + G++ V  TVV  +  K   DFFPLTV++
Sbjct: 3   KVSYEFDLFNKHYKLESGELAKQATGQCLVSCGDSTVNLTVVVSKERK-NYDFFPLTVDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVG+IPGGYL+RE+RPTE   L +RMIDR IRP F   ++NE Q++   +  D  
Sbjct: 62  IEKMYAVGRIPGGYLKREARPTEKATLTARMIDRPIRPSFPDGFRNEVQIVAMPLVADQI 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFVSG 180
                + ++ ASAA+   G+PFEGP+   ++      G+Y++NP  +E +   LDL ++G
Sbjct: 122 HPVDTICVMGASAAMYTGGVPFEGPLACVRIGRDKTTGEYLVNPTYEERKNSDLDLELAG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM-------CAKEPIVID 233
           ++  + M+E  A ++SED +LDA+ FG                        C K+   +D
Sbjct: 182 SETFISMLEAGAEEISEDDMLDAMAFGQKAIAAFCAEQKNFFAKYEAVNGVCEKKSYELD 241

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
                ++   +     +++  +    +K  R  +++ LK  +V  F+ +  +  E  I +
Sbjct: 242 EP-IEEVHNRVFAHF-DEMSAALKDADKLSRMDKVEALKAAIVEEFTEDEQAEWELAIPA 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + ++   +R ++++   R+DGR +  VR +  +   L   HGS LF RG TQ + + T
Sbjct: 300 ELKSLEKHAMRKMVVETGERVDGRSATEVRPLMVKGDYLPLVHGSGLFQRGQTQVLSIAT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   + Q +D++  T+   ++ HYNF P  TGE  R+G+P RREIGHG LA RA+ PV+
Sbjct: 360 LGMLSEWQRLDTIEPTEGKRYIHHYNFPPYCTGETGRLGSPKRREIGHGNLAERALLPVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI +PV+G+AMGL+++    
Sbjct: 420 PSEEEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPIKRPVSGVAMGLIQEEGKT 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL+QA  GR+HIL+
Sbjct: 480 VVLTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALKQAHEGRMHILD 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M   + ++R    E  P++  M IP D IR+VIG GGKVIR I ++TGA V I +DG+V
Sbjct: 540 AMLAAVPQTRTATKETAPQIISMKIPVDNIRDVIGSGGKVIRAIQDETGATVEIQEDGSV 599

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I+       + A++ I +I  VPEV + Y G+VV +  FGAFV     +DGL+HIS+++
Sbjct: 600 FISGV-GDAGKLAQDRILAIIKVPEVGEEYTGRVVGIQPFGAFVELLPGKDGLLHISRVA 658

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM---KVVDQNTGK 696
             RV K  DV+  GD V V++LD DD+GKI L       V QN G+
Sbjct: 659 QGRVNKIEDVLSVGDEVRVRVLDVDDKGKISLDRLDKPEVAQNDGQ 704


>gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           RCC307]
 gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RCC307]
          Length = 719

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/710 (40%), Positives = 419/710 (59%), Gaps = 24/710 (3%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T  I + GR ++L T R A Q+ G+VL   G+T VL T     + ++G DF PLT +Y+E
Sbjct: 5   TRSISFDGREIRLTTRRYAPQAGGSVLIECGDTAVLVTATRA-NGREGIDFLPLTCDYEE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA G+IPG ++RRESRP E   L  R+IDR IRPLF    +++ Q++  VM  D    
Sbjct: 64  RLYAAGRIPGSFMRRESRPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSVDERVP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDA 184
           P V+++  AS A +L+ +PF GP+   +V  +   ++LNP   E ++  LDL V+GT + 
Sbjct: 124 PDVLAVTGASLATLLAKIPFYGPMAAVRVGLLGDDFILNPSYREIERSELDLVVAGTAEG 183

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEE 243
           V+MVE  A QL E+ +++AI FG+     +I    +       E +V +   + + + + 
Sbjct: 184 VVMVEAGAQQLPEEDMIEAIDFGYEAVLELIRHQKETIAELGIEQVVPEKPAEDTTVPDY 243

Query: 244 MSQMIKEDLRVSC--FIPEKYVRCKQIDDL-------------KKKMVSYFSSEHSSWNE 288
           +++   +D+      F   K  R  Q+D +                + +  SS     N 
Sbjct: 244 LAKQCTKDIGAVLSQFTLTKAERDSQLDSIKAKAAEAIAALKETDAVRAAVSS-----NG 298

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQ 347
             + + F+ +   ++R  ++    R+DGR  + VR ISA  G+L  R HGS LF RG TQ
Sbjct: 299 KLLGNSFKALTKSMMRAQIVKDGKRVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQ 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M +P RREIGHG LA R
Sbjct: 359 VLSTATLGTPSDAQEMDDLNPSNEKHYLHHYNFPPYSVGETRPMRSPGRREIGHGALAER 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP    FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVPI+ PVAG AMGL+
Sbjct: 419 ALLPVLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAAPVAGAAMGLI 478

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           ++G +  +L+DI G ED LG MDFKVAGT+ GITA+QMDMKI G++   +  A+ QA+  
Sbjct: 479 REGSEVRVLTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLAMKTIGEAVTQARPA 538

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RLHIL +M + L + R  +    PR     I P+ I  VIG GG+ I+GI E+T  K++I
Sbjct: 539 RLHILEKMLEALDKPRDTMSPHAPRRLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDI 598

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D G V +AS   A  E A+++I  +T      + + G+V +V+  GAFV     ++G++
Sbjct: 599 EDTGIVTVASHDGAAAEEAQKIIEGLTRRVSEGEYFDGKVTRVIPIGAFVEILPGKEGMI 658

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           HISQLS +RV K  DVV  GD V V++ + D+RG+I L+++ V Q+   P
Sbjct: 659 HISQLSDQRVEKVEDVVNVGDEVRVRVREIDNRGRINLTLRGVPQDGSDP 708


>gi|265754741|ref|ZP_06089793.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           3_1_33FAA]
 gi|263234855|gb|EEZ20423.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           3_1_33FAA]
          Length = 728

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 432/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 18  MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 77

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 78  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFS 137

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++  +  +DL V
Sbjct: 138 ADGIDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMV 197

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E  ++SE  +L A+   H   K   +A  +L +       V       
Sbjct: 198 AATYDNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVG--STVKREYCHE 255

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + ++E      +         K+ R    D ++ +  + ++ E        I 
Sbjct: 256 ENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKGTLID 315

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 316 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 375

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 376 TLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRALKGQ 435

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K+   
Sbjct: 436 IP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKNAGE 493

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR H
Sbjct: 494 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKEGREH 553

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I++ 
Sbjct: 554 ILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEET 613

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +DGL+
Sbjct: 614 DGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGKDGLL 673

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     K
Sbjct: 674 HISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVLLPRPEK 724


>gi|126660748|ref|ZP_01731846.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
 gi|126617989|gb|EAZ88760.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
          Length = 715

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/696 (42%), Positives = 438/696 (62%), Gaps = 16/696 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ GAVL   G+T VL T    +  ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTSK-GREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E  ILISR+IDR +RPLF   +++E Q+I   +  D E  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRDEIQIIATTLSMDEEVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDAV 185
            V+++  AS A++ + +PF GP+   +V  I   +++NP   E +   LDL V+G+ D V
Sbjct: 125 DVLAVTGASIAVIQAQIPFYGPMAAVRVGLIGDDFIINPTYREVESGDLDLVVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           +MVE  ANQL E  +++AI FG+   + +I A   + +    + +  +     + LE+ +
Sbjct: 185 VMVEAGANQLPEQDIIEAIDFGYEAVRDLIGAQYDIMEELGMKLVKAEPPGVDEALEKFI 244

Query: 245 SQMIKEDLRVSC--FIPEKYVRCKQIDDLKK----KMVSYFSSEHS-----SWNEGEIVS 293
           S    + ++     +   K  R   +D++K+    ++++    E       + +   +  
Sbjct: 245 SDRAADSIKKVLVQYDLGKAERDTALDNIKETAIEEVIAELPEEDPIKVTTTEDPKAVGK 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
           V++ +  K++R+ ++D+ +R+DGR  + VR IS +VGLL  R HGS+LF RG TQ   + 
Sbjct: 305 VYKGLTKKLMRSQIVDEGIRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLA 364

Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q + D L       ++ HYNF P + GE   + +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAITP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+++G 
Sbjct: 425 VLPPQDEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIREGK 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A++QA   RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKITGLSMDVVAKAIEQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +M   + + R +L  F PR+  M I P+QI  VIG GGK I+ I EQTG+K++I DDG
Sbjct: 545 LEKMLGAIDQPRPELSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+    + E AR++I ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIAAIQAKKAERARDLIFNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           L+  RV K  + V  GD V VK+ + D++G++ L+ 
Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLTR 700


>gi|225374866|ref|ZP_03752087.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
           16841]
 gi|225213249|gb|EEG95603.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
           16841]
          Length = 697

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/696 (39%), Positives = 417/696 (59%), Gaps = 9/696 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            +  +E AGR L ++ GR+  Q++GA L  YGET VL+TVV     +DG DFFPL+V ++
Sbjct: 3   KSFSMELAGRTLTVDIGRVCAQANGAALIKYGETTVLSTVVASDKPRDGVDFFPLSVEFE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D E 
Sbjct: 63  EKMYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPEC 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQD 183
            P VV M+ ++    +S +PF+GP    Q+  ++G++++NP     D+G L L V+ T+ 
Sbjct: 123 RPEVVGMIGSALVTTMSDIPFDGPCAMTQMGMVDGEFIVNPSQKVWDEGDLQLTVASTRT 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEE 242
            V+M+E  AN++ E+ +++AI   H+  + +I+ + K+   C K      S     ++  
Sbjct: 183 KVIMIEAGANEIPEEKMIEAIYKCHDVNQTIIQFMDKIVAECGKPKHEYTSCAIPDEMFA 242

Query: 243 EMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            M +++  ED+  + F  EK  R + I ++  K+   F+ +        +       Q K
Sbjct: 243 AMKEIVTPEDMENAVFTDEKQKREENIREITDKLAEAFADKEE--WLAVLGEAVYQYQKK 300

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR ++L    R DGR    +R ++A+V L+ R HGS++F RG TQ   VVTL    + Q
Sbjct: 301 TVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQ 360

Query: 362 YVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D L        ++  YNF   + GE      P RREIGHG LA +A+  VLP   +FP
Sbjct: 361 KIDGLDANITTKRYIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALVAVLPSEEEFP 420

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSD 478
           Y +R VSE  ES+GS+SMA+ C S +ALM AGVPI   VAGI+ GLV     DD+I+L+D
Sbjct: 421 YAIRAVSETFESNGSTSMASTCASCMALMAAGVPIKSMVAGISCGLVTGDTDDDYIVLTD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSK 537
           I G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL+I++E MSK
Sbjct: 481 IQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARLYIMDEVMSK 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S+ R ++G + P++  + I P++I +V+G  GK I  I+ +T  K++I D+G V +  
Sbjct: 541 AISKPRKEVGAYAPKIIQIQIDPNKIGDVVGQKGKTINEIIARTDVKIDITDEGAVSVCG 600

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   ++  A +MI++IT   E  +I+ G VV + +FGAF+ F   ++G+VHIS++S ER+
Sbjct: 601 TDKEKMAEAIDMIKTITTDFEEGQIFTGTVVSIKEFGAFIEFAPGKEGMVHISKISKERI 660

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            +  DV+  GD V V  L  D  G+I  SMK V +N
Sbjct: 661 NRVEDVLTLGDKVTVVCLGKDKMGRISFSMKDVPEN 696


>gi|212692847|ref|ZP_03300975.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
 gi|212664636|gb|EEB25208.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
          Length = 728

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/711 (40%), Positives = 431/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 18  MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 77

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 78  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFS 137

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++  +  +DL V
Sbjct: 138 ADGIDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMV 197

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E  ++SE  +L A+   H   K   +A  +L +       V       
Sbjct: 198 AATYDNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVG--STVKREYCHE 255

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + ++E      +         K+ R    D ++ +  + ++ E        I 
Sbjct: 256 ENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKGTLID 315

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 316 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 375

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 376 TLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRALKGQ 435

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K+   
Sbjct: 436 IPT--GYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKNAGE 493

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR H
Sbjct: 494 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKEGREH 553

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I++ 
Sbjct: 554 ILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEET 613

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +DGL+
Sbjct: 614 DGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGKDGLL 673

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     K
Sbjct: 674 HISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVLLPRPEK 724


>gi|237709532|ref|ZP_04540013.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           9_1_42FAA]
 gi|237724873|ref|ZP_04555354.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D4]
 gi|229436611|gb|EEO46688.1| polyribonucleotide nucleotidyltransferase [Bacteroides dorei
           5_1_36/D4]
 gi|229456588|gb|EEO62309.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           9_1_42FAA]
          Length = 711

 Score =  708 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 432/711 (60%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPDNFHAEVYVNIVLFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  ++  +  +DL V
Sbjct: 121 ADGIDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEQLGKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E  ++SE  +L A+   H   K   +A  +L +       V       
Sbjct: 181 AATYDNIMMVEGEMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEEVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +E++ + ++E      +         K+ R    D ++ +  + ++ E        I 
Sbjct: 239 ENDEDLRKAVRETCYDKAYAIAASGNRNKHERQDAFDAIRDEFKTQYTEEELEEKGTLID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ VD +    R  F++HYNF P +TGE        RREIGHG LA RA+   
Sbjct: 359 TLGTKLDEKIVDDVLDQHRERFLLHYNFPPYSTGEAKAQRGVGRREIGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+K+   
Sbjct: 419 IP--AGYPYTVRVVSDIMESNGSSSMATVCAGTLALMDAGVAMKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSFEILEKALLQAKEGREH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ILN++++ ++E R  L    PR+E M IP + I  +IG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILNKLTECIAEPRKDLKPHAPRIETMTIPKEFIGAIIGPGGKIIQGMQEETGATITIEET 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++IA ++   I+ A  +I+ I  VPEV ++Y G+V  VM +G FV F   +DGL+
Sbjct: 597 DGVGRIEIAGTNKKCIDDAMRIIKGIVAVPEVGEVYVGKVRSVMPYGVFVEFLPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     K
Sbjct: 657 HISEIDWKRLETIEEAGLKEGDEIEVKLLDIDPKTGKFKLSHKVLLPRPEK 707


>gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 722

 Score =  708 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/704 (40%), Positives = 420/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR ++L TGR A Q+ G+VL   G+T VL T       ++G DF PL+ +Y+
Sbjct: 4   QTTSVSFDGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQG-QGREGADFLPLSCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              ++++  +S A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADILAVTGSSMATLLAGIPFYGPMAAVRVGLLGDDFVLNPSFREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFS 238
            V+MVE  +NQL+E  V++AI FG+     +I+A   + K         E   +D    S
Sbjct: 183 GVVMVEAGSNQLTEQDVIEAIDFGYEAVNELIKAQESILKDSGLTQIKPEKPDLDETVPS 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290
            LE+  ++ I   L+   F   K  R  ++D++K        S             N   
Sbjct: 243 YLEKNCTKPISALLKE--FDLSKEDRDLKLDEIKTNCAEKIDSLKDDNAVKKSITTNTKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           +   F+ +  K++R  ++    R+DGR  + VR+ISA+ G+L  R HGS LF RG TQ +
Sbjct: 301 LGISFKALTKKLMREQIIKDGKRVDGRALDEVREISAEAGILPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RRE+GHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLNPSPDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SM +VCGS++AL+DAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G++  IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+   I+  A+ QAK  R 
Sbjct: 481 GEEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKMTGLPIKIIGEAINQAKPART 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMVQAIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS      E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGVAAEEAQKIIEGLTRKVHEGEVFTGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ + QN
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGIPQN 704


>gi|282881124|ref|ZP_06289811.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304928|gb|EFA97001.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
           CRIS 5C-B1]
          Length = 766

 Score =  708 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/703 (39%), Positives = 424/703 (60%), Gaps = 24/703 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRTISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE +P++NEIL SR++DR++RPLF   Y  E  V I ++  D    P  ++ 
Sbjct: 63  RFPGGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVYVQIMLLSADGVDQPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDAVLMVEL 190
           +AASAA+  S +PF+  +   +V  ING+YV+NP  ++ +   +DL V  T+D ++MVE 
Sbjct: 123 LAASAAMACSDIPFDFYISEVRVARINGEYVVNPTFEQMKSADMDLMVGATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E N++SE  +++A+   H   KP+     +L K   K+  V    D    +E++ Q + +
Sbjct: 183 EMNEVSELDLIEALKAAHEAIKPMCTVQEELNKELGKD--VKREYDHEVNDEDLRQQMND 240

Query: 251 DLRV-SCFIPE----KYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVSVFEDI 298
           +L   +  I +    K  R    D +    +  + + H+   E        E    ++D+
Sbjct: 241 ELYQPAYDITKQALPKQERHDAFDKIIADFLEKYDAAHADLTEEELEEKHAEATRYYDDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+TQ++   TLGT+ 
Sbjct: 301 LKNAMRRCILDEGKRLDGRKTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKL 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P    
Sbjct: 361 DEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--ED 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIIL 476
           FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D ++IL
Sbjct: 419 FPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYVIL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HIL +M 
Sbjct: 479 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILGKML 538

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593
           + + E R ++    PR+E   IP + I  +IG GGK+I+ + E TGA + ID+    G +
Sbjct: 539 ETMPEPRSEMKPQVPRIEAFEIPKEFIGAIIGPGGKIIQQMQEDTGATITIDELDGVGKI 598

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I++A   I+ I  +PE+ ++Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 599 QVSAPNKEAIDSAIAKIKGIVAIPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 658

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +R+    D  + EGD + VKLL+ D + GK KLS KV+ +  
Sbjct: 659 WKRLETVEDAGIHEGDKIKVKLLEIDPKTGKYKLSRKVLLEKP 701


>gi|326800482|ref|YP_004318301.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
 gi|326551246|gb|ADZ79631.1| Polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
          Length = 732

 Score =  708 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/705 (40%), Positives = 435/705 (61%), Gaps = 10/705 (1%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           ++      +   GR +++ETG++A+Q+DG+V+   G T++LATVV  +  K G DF PL+
Sbjct: 18  YNAIKKTFDIGDGRQIEIETGKLAKQADGSVVVKMGNTMLLATVVSAQEAKPGTDFLPLS 77

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+LRRE+R ++ EILISR++DR++RPLF   Y  +TQV+I ++  
Sbjct: 78  VDYQEKYAATGRIPGGFLRREARLSDYEILISRLVDRALRPLFPDDYHADTQVMITLISA 137

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D +  P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP L + +  +L+  V+
Sbjct: 138 DKDIMPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKFVINPLLSDLERATLEFIVA 197

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVID-SKDF 237
           G+ + ++MVE EA ++SE+ +++AI F H   K  ++A  +LA+M  K E  V +     
Sbjct: 198 GSANDIVMVEGEAKEISEEEMVEAIAFAHEAIKVQVQAQLELAEMVGKLEKRVYNHEPSN 257

Query: 238 SKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            +L+E +     + +   +     K  R  +  D+ +        +            F 
Sbjct: 258 PELKERVYAATYDSVYAVAKSGLSKKERSAKFADIAEAFALTLGEDVDEETVFLAKKYFH 317

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+Q   VR ++L++ +R+DGRD  TVR I ++V  L   HGS++F RG+TQ++  VTLG 
Sbjct: 318 DVQYDAVRNLILNEGIRLDGRDVRTVRPIWSEVDYLPAAHGSAIFTRGETQSLTSVTLGA 377

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           +EDEQ +D       + F++HYNF   +TGEV     P RRE+GHG LA R++  VLP  
Sbjct: 378 KEDEQMIDGAFINGYSRFILHYNFPGFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPSQ 437

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            + PYT+R+VS+I ES+GSSSMATVC  +LALMDAGV I+ PV+GIAMGL+ D     + 
Sbjct: 438 EENPYTIRVVSDILESNGSSSMATVCAGTLALMDAGVKITAPVSGIAMGLITDEKTGKYA 497

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +LSDI GDEDHLG MDFKV GT  GI A QMD+KI G+   ++  AL QAK  RLHILNE
Sbjct: 498 VLSDILGDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVLKEALYQAKESRLHILNE 557

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DG 591
           M K +   R       PR+  + I  + I  +IG GGK+I+ +  +TG  ++I++    G
Sbjct: 558 MLKTIEAPREDFKPHAPRIVSLTIDKEFIGAIIGPGGKIIQEMQRETGTTISIEEIEGKG 617

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V++ + +   I+ A   I++I   PEV  +Y+G+V  +M FGAFV     +DGL+HIS+
Sbjct: 618 IVQVFADNKTSIDDAVRRIKAIAAKPEVGDVYEGKVKSIMPFGAFVEILPGKDGLLHISE 677

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +  +R      + + G+ V VKLLD D +GK+KLS K +     K
Sbjct: 678 IDWKRYETMEGIFQVGEIVKVKLLDIDKQGKLKLSRKALLPRPEK 722


>gi|294056196|ref|YP_003549854.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615529|gb|ADE55684.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 724

 Score =  708 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/707 (39%), Positives = 423/707 (59%), Gaps = 16/707 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M   H V ++  G  +++ TG +A  + GAV    GET +  +     +L+ GQDFFPLT
Sbjct: 1   MKQKHNVTVD--GLGIEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A GK PGGY +RE +P+E EIL SR+ DR +RPLF K + NE QVI  ++  
Sbjct: 59  VDYREKFSAGGKFPGGYFKREGKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLAT 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P V+ + AASAA ++S +P+ GPV   +V  I+G++V NP  DE     LDL   
Sbjct: 119 DQTHEPDVLMVNAASAATLISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLDLIYV 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           G++  ++M+E  A  +S++   +A+ +G    +P+I A  +LAK+  KE          +
Sbjct: 179 GSETEMMMIEGSAEFISDERFYEALEYGQQAIQPIIAAQKELAKLAGKEKKEFPLVLTPA 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSSWNEGEIVSVFE 296
            + E       E ++ +        R   I+ + K   +    +    + +  ++   F+
Sbjct: 239 DVTEFCEAHAAEKVKEALGHDSYTERKLAIEAIAKDTTAALEEKLGADNVDGNDVARAFD 298

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +IQ K+ R  +L+   R+DGR ++ +R IS   G+L R HGS++F RG+TQA+V+ TLGT
Sbjct: 299 EIQEKLYRQNILETGRRVDGRGAKDLRAISCDTGVLPRVHGSAVFNRGETQALVISTLGT 358

Query: 357 REDEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             D Q +D L+ G     F++HYNF P +TGE  R G   RREIGHG LA R++ P+LP 
Sbjct: 359 SRDVQDIDGLTGGATSKSFILHYNFPPFSTGEAGRFGFTGRREIGHGALAERSLLPILPP 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---- 471
             +FPY +R+VSE+  S+GS+SMA++CG  L+LMDAGVPI+ P AGI+ GLV + D    
Sbjct: 419 EDEFPYAIRVVSEVMSSNGSTSMASICGGCLSLMDAGVPITAPCAGISTGLVTEKDADGK 478

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
               +IL+DI G EDH G MDFK+AGT  GIT  Q+D+KI G+  +I + A++Q +  R+
Sbjct: 479 ITKHVILTDILGAEDHFGDMDFKIAGTPEGITGFQLDLKIQGLPFDITLEAIKQNRDARM 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+  M++ L ESR  L E  PR+  + I P++I  +IG GGK IR I E +GA+++ID+
Sbjct: 539 KIIAIMAEHLPESRQDLREHAPRIHTIKIDPEKIGALIGPGGKNIRRITEVSGAQIDIDE 598

Query: 590 D--GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  G V + ++    ++ A + +   T   EV K Y+G V  + DFGAFV     ++GLV
Sbjct: 599 DNSGRVLVFATDKESMDRAIQEVELCTAEIEVGKTYRGIVRGIKDFGAFVECLPGKEGLV 658

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           HIS+L+  RV KT D+ K GD + VK +   ++GK++LS K   ++ 
Sbjct: 659 HISELADFRVNKTEDICKLGDEMVVKCIGM-EKGKVRLSRKAALEDA 704


>gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9515]
 gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 721

 Score =  708 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/703 (40%), Positives = 429/703 (61%), Gaps = 18/703 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            I + GR ++L TG  A Q++GAV+   G+T +L T       K+  DF PL  +Y+E+ 
Sbjct: 7   SITFDGREIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNK-KEAADFLPLICDYEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG++RRE RP E   LI+R+IDR +RPLF    ++E Q++ + +  D      
Sbjct: 66  YAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVPAD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V+++  AS A +L  +PF GP+   +V  +   ++LNP   E ++G LD+ V+G+ + ++
Sbjct: 126 VLAVTGASLATLLGEIPFYGPMAAVRVGLLGDDFILNPSYREIEKGDLDIIVAGSPEGIV 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----SKLE 241
           M+E  ANQLSE   ++AI FG+     +I+A   L K    + +     +      + LE
Sbjct: 186 MIEAGANQLSEQDTIEAIDFGYEAVTELIKAQENLLKDLGIKQVKPSEPEVDNTLAAYLE 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIVS 293
           +  ++ I  DL +  F   K  R  +++ +K ++   +     ++      S NE  I S
Sbjct: 246 KNCTKPI--DLVLKKFDQSKEERDLELEKIKLEVHSKIDSLKDDNQLKVLTSENEKLIHS 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
            F+ +  K++R+ +++   R+DGRD + VR ISA+ G+L  R HGS++F RG TQ +   
Sbjct: 304 DFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISAKAGILPKRVHGSAVFQRGLTQVLSTT 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA RAI PV
Sbjct: 364 TLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPV 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL+K+G +
Sbjct: 424 LPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKE 483

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+  +I+  A+++A+  RLHIL
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPVSIISDAIKKARPARLHIL 543

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M   + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G 
Sbjct: 544 EKMQDAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGI 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+VHISQL
Sbjct: 604 VTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQL 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 664 SEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVAQNGG 706


>gi|302670339|ref|YP_003830299.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           proteoclasticus B316]
 gi|302394812|gb|ADL33717.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           proteoclasticus B316]
          Length = 696

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/700 (39%), Positives = 409/700 (58%), Gaps = 15/700 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V T  +E AGR LK+E G++ +Q++G     YG+T VL T       +DG DFFPL+V Y
Sbjct: 2   VKTYSMELAGRTLKVEIGKVGKQANGCAFMQYGDTTVLCTATASAKPRDGIDFFPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVGK PGGY +RE +P+EN IL SR+IDR +RPLF K Y+N+  +   VM  D +
Sbjct: 62  GEKFYAVGKFPGGYNKREGKPSENAILTSRVIDRPMRPLFPKDYRNDVTIETMVMAVDPQ 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P +V+M+ AS ++ +S +PF+GP    Q+  I+G+ ++NP  ++   G L L V+   
Sbjct: 122 CRPELVAMLGASVSVSISDIPFDGPCAMTQIGMIDGELIVNPTQEQWNTGDLKLTVASVG 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKDF 237
             V+M+E  AN++ E+ + +AI   H+    +IE    +     K         +  + F
Sbjct: 182 QKVIMIEAGANEIPEEKMKEAIYKAHDVNLQIIEFFKGIVAEVGKPKHEYTSCAVPEELF 241

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + ++E +     E++  + F  +K  R   I D+  ++   F+   +      +      
Sbjct: 242 AAIKEVVPP---EEMEKAVFTDDKQTREANIADITDRLTEKFA--DNEEWLAILGEAIYQ 296

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            + K VR ++L    R DGR+ + +R +SA+V L+ R HGS++F RG TQ   VVTL   
Sbjct: 297 YEKKTVRKMILKDHKRPDGREIKQIRPLSAEVDLIPRVHGSAMFTRGQTQICDVVTLAPL 356

Query: 358 EDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            + Q V+ L        ++  YNF   + GE      P RREIGHG LA RA+ PVLP  
Sbjct: 357 SEAQKVEGLDSFAADKRYVHQYNFPAYSVGETKVSRGPGRREIGHGALAERALLPVLPSV 416

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV     DDF+
Sbjct: 417 EEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGDTDDDFV 476

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED  G MDFKV GT  GITA+QMD+KI G+++ I+  A+ Q +  R  I++E
Sbjct: 477 VLTDIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTKPIVETAIAQCREARFFIMDE 536

Query: 535 -MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            MSK ++E R ++ ++ P++  + I P++I +V+G  GK I  I+ +TG K++I DDG V
Sbjct: 537 CMSKAIAEPRKEVSKYAPKIVSIQIDPEKIGDVVGQRGKTINEIIARTGVKIDITDDGKV 596

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +      +I  A  M+  I    E  +++ G+VV + +FGAFV F   ++G+VHIS++S
Sbjct: 597 SVCGEDQDKINEAVNMVNIIVSDFEKGQVFTGKVVSIKEFGAFVEFAPGKEGMVHISKIS 656

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            ER+    DV+  GDTV V  L  D  G+I  SMK V QN
Sbjct: 657 RERIEHVEDVLTLGDTVTVVCLGKDKMGRISFSMKDVAQN 696


>gi|24213647|ref|NP_711128.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658536|ref|YP_002622.1| polynucleotide phosphorylase/polyadenylase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|81406860|sp|Q72NX7|PNP_LEPIC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81470924|sp|Q8F7J8|PNP_LEPIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24194449|gb|AAN48146.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601779|gb|AAS71259.1| polyribonucleotide nucleotidyltransferase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 698

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/695 (42%), Positives = 428/695 (61%), Gaps = 4/695 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            HT+  ++    + LETG  A+Q+ GAV+   G  V+LATV      K+GQDFFPLT  Y
Sbjct: 2   THTISGQYGRDTIVLETGSWAKQAHGAVVYKSGNLVLLATVCAADEAKEGQDFFPLTCEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ Y+VG+ PGGY +RE++P E+EILISR+IDR IRPLF + Y  E Q+ + V+  D +
Sbjct: 62  TEKLYSVGRFPGGYFKREAKPPEHEILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            S    ++ AASAAL +S +PF GP+ GA++  +NG+ +LNP   E     LDL V+GT+
Sbjct: 122 VSVAGHALNAASAALAVSDIPFNGPIAGARIGRVNGELILNPTTKEILNSDLDLVVAGTK 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
             ++M+E EA +LS + ++ A+ F        +    + AK        +  K    +L 
Sbjct: 182 THIVMIEGEAKELSNEEMIAALRFAQKHIAEFVTLQEEYAKKIGVVKREVKLKVRDEELL 241

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQA 300
            ++ +     L  +   P+K  R K+I ++ K++V +F       ++  +I +   +++ 
Sbjct: 242 SKVKEYAFAKLTTANQTPDKTARNKEISNVNKEVVEFFKDTIEDSDKIKDIKAYLHELEY 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           ++VR  +L K  R DGR  + +R IS ++  L   HGS++F RG TQ++ VVTLGT  D 
Sbjct: 302 EIVREQVLTKGTRFDGRKLDEIRSISVEINPLPGPHGSAVFTRGQTQSLGVVTLGTGSDN 361

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q  ++L G +   FM+HYNF   + GEV R   P RREIGHG LA RA+  VLP+  +FP
Sbjct: 362 QRYETLEGQKEKSFMLHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKPDEFP 421

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-GDDFIILSDI 479
           Y +R+VSEI ES+GSSSMA+VC  SLALM AGVPI   V+GIAMGL  D    + +LSDI
Sbjct: 422 YVIRVVSEILESNGSSSMASVCSGSLALMAAGVPIQGSVSGIAMGLFSDSSGKYAVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G EDH G MD K+AGT  GITA QMD+K+ G+S +++    +QA+RGR HIL+ M K +
Sbjct: 482 AGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILDIMEKHI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S++   L    PR+ +  IP D+I  +IG GGK +RGI E TGA++ I+DDG V I+ S+
Sbjct: 542 SKASSTLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDDGKVTISGSN 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A +M+       EV KIY+G+V ++ DFGAFV     ++GL HIS++  +RV  
Sbjct: 602 QESAEKAAKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFKRVNS 661

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             D+VKEGD + VK+L+ D  GKI LS K   +  
Sbjct: 662 VKDIVKEGDIIRVKVLNVDKTGKIDLSRKDALEEE 696


>gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
 gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
          Length = 733

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/692 (41%), Positives = 427/692 (61%), Gaps = 10/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E +  G+   LE G +A+Q+ GA +   G++ VL T V  +  KD  DFFPLTV++
Sbjct: 3   KVTHEFDLYGKHYVLEAGELAKQATGACVVKCGDSTVLLTAVVSKERKD-YDFFPLTVDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVG+IPGGYL+RE+RP+E   LI+RMIDR +RP F + ++NE Q++   +  D  
Sbjct: 62  IEKMYAVGRIPGGYLKREARPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQI 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDE-DQGSLDLFVSG 180
           ++   +S++ ASAAL + G+P+EGP+   ++      G++++NP  +E D   LDL ++G
Sbjct: 122 NAVDTISVMGASAALHIGGVPYEGPLACVRIGRNSETGEFLVNPTYEERDHSDLDLELAG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK--MCAKEPIVIDSKDFS 238
           +   + M+E  A+++SE+ +L A+ FG        E   K  +       PI        
Sbjct: 182 SATFISMLEAGAHEISEEDMLSAMAFGQEAIAAFCEEQKKFFEKWEAVNGPIEKREYILD 241

Query: 239 KLEEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +   E+ + I    +++  +    +K  R  ++ DL + + + F+ E        I    
Sbjct: 242 EPIPEVHERIFAHYDEMSAALKDADKQSRMAKVADLMETIKAEFNEEEQEEWSRAIAVEL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++   +R ++++   R+DGR ++ +R I  +   L   HGS LF RG TQ + + TLG
Sbjct: 302 KSLEKHAMRVMVVETGERVDGRAADEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D++       ++ HYNF P  TGE  RMG+P RREIGHG LA RA+ PV+P 
Sbjct: 362 MLNEWQRLDTIEPVDGKRYIHHYNFPPFCTGETGRMGSPKRREIGHGALAERALLPVIPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVP+ +PV+G+AMGL+++    ++
Sbjct: 422 EDEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPLVRPVSGVAMGLIQENGKTVV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL QA  GR+ ILN+M
Sbjct: 482 LTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALMQAHEGRMFILNKM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +   R +  E  P++  ++IP D+IR+VIG GGKVIRGI E TGA V+I +DG+V I
Sbjct: 542 LEAIPAPREETKETAPQILSLSIPTDKIRDVIGSGGKVIRGIQEDTGATVDIQEDGSVFI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A ++ A  EAA E I++I  VPEV + Y G+VV +  FGAFV     +DGL+HIS+++  
Sbjct: 602 AGTNGAA-EAAAERIKAIVKVPEVGEEYTGRVVGIQPFGAFVELLPGKDGLLHISRVAQG 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           RV K  DV+  GD V V++L+ D++GKI L  
Sbjct: 661 RVEKIEDVLSIGDEVKVRVLEVDEKGKISLDR 692


>gi|183220916|ref|YP_001838912.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911012|ref|YP_001962567.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|226702658|sp|B0SH22|PNP_LEPBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702659|sp|B0SQH8|PNP_LEPBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167775688|gb|ABZ93989.1| Polyribonucleotide nucleotidyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779338|gb|ABZ97636.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase; PNPase) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 696

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/685 (43%), Positives = 442/685 (64%), Gaps = 6/685 (0%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           W    + LETG+ A+Q+ G+V+   G  V+LATV      K+GQDFFPLT  Y E+ Y+V
Sbjct: 9   WGRDSITLETGKWAKQAHGSVVYKTGNLVLLATVCAAEEPKEGQDFFPLTCEYTEKAYSV 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+ PGGY +RE++P E+E+L+SR++DR IRP+F + Y +E Q+++ V+  D + S    +
Sbjct: 69  GRFPGGYFKREAKPAEHEVLLSRILDRPIRPMFPEGYFSEVQLLVQVLSADKQVSVQGHA 128

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVE 189
           + AASAAL +S +PF GP+ GA++  I G+++LNP  +E  +  LDL V+GT+DA++M+E
Sbjct: 129 INAASAALSVSSIPFAGPIAGARIGRIGGEFILNPTNEEITKSDLDLVVAGTKDAIVMIE 188

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQM 247
            EA+++S++ ++ A+ F   + K  +    +LAK     K+ +V+ + D   L  ++ + 
Sbjct: 189 GEASEISKEDMMAALRFAQEQLKFAVAMQEELAKKHGTVKKEVVLKAPDK-DLHAKIREF 247

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTV 306
             + L ++    +K  R   I  + K+ V +F +  +  ++  +I     +++ +VVR +
Sbjct: 248 AFDRLTLANKNADKAKRNDDIKAINKETVEHFKTLLAPEDKTKDIKHFLHELEYEVVREL 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L + +R DGR ++ +R IS ++ +L   HGS++F RG TQ++ V+TLGT  D Q  ++L
Sbjct: 308 VLGEGIRFDGRKTDEIRQISCEIDVLPGPHGSAVFTRGQTQSLGVMTLGTTSDNQRYETL 367

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G++  +FM+HYNF   + GEV R   P RREIGHG LA RAI  VLP   +FPY +R+V
Sbjct: 368 EGSKEKNFMLHYNFPAFSVGEVRRNSGPGRREIGHGNLAERAIKKVLPTQTEFPYVIRLV 427

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-DDFIILSDISGDEDH 485
           SEI ES+GSSSMA+VC  +LALM  GVPIS  V+GIAMGL  D    F +LSDI+G EDH
Sbjct: 428 SEILESNGSSSMASVCSGTLALMAGGVPISGAVSGIAMGLFSDEKGRFAVLSDIAGIEDH 487

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFK+AGT  GITA QMD+K+ G+   ++  A++QA+ GR HIL EM+K +S  +  
Sbjct: 488 FGDMDFKLAGTKKGITAFQMDLKVNGLGLEVLQKAIEQAEVGRDHILGEMNKAISSVKGN 547

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L E  PR+    IP D+I  +IG GGK+IR I+EQ+G+++++DD G V IAS S    E 
Sbjct: 548 LSENAPRITQKQIPKDRIGELIGPGGKMIRAIIEQSGSEISVDDSGKVTIASPSEESKEK 607

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A  MI  I +  EV KIY G + ++ DFGAFV     ++GL HIS+L  +RV    D+V 
Sbjct: 608 AIAMIDGIFEEIEVGKIYDGVIKRIADFGAFVEILPGKEGLCHISKLDVKRVQSVRDIVS 667

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV 690
           EGD + VK++  D  GKI LS K V
Sbjct: 668 EGDKIKVKVISVDKMGKIDLSRKDV 692


>gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 707

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/699 (40%), Positives = 420/699 (60%), Gaps = 10/699 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +HT+        +  ETG++A+ +DGAV    G+T+V+ T V    +K+GQDFFPL+V Y
Sbjct: 3   IHTITAALPNGDITFETGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+  A GK PGGY +RE RPTE EIL  RM DR +RPLF K Y  +TQ++  ++  D E
Sbjct: 63  KEKAAAAGKFPGGYFKREGRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIVALLLSADGE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           +   ++S+  ASAAL +S +PF GPV   +V  +NGQ+VLNP   +  +  LDL   G +
Sbjct: 123 NDADIISINGASAALCVSDIPFAGPVGAVRVGRVNGQFVLNPTHSQRAKSDLDLVYVGNK 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLE 241
             V+M+E  AN+L E   + A+ F     + ++    +L     K    +       +L 
Sbjct: 183 SEVIMIEGAANELPEAEFIKALAFAQEHVQVLVAVQEELRAKAGKVKREVPLMLVKDELL 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E   ++    +  + + P K  R K +  L+ ++ +   + +      EI   F+ +Q K
Sbjct: 243 EIAYEVAGSRIEGAIYRPSKVERSKAVGALRDEVEAAIKARYPESGNFEISQAFDYLQKK 302

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R  +LDK+ R DGR  + +R +S + GL+ R+HGS+LF RG+TQA+ + TL   ++ Q
Sbjct: 303 AFRVAILDKQTRADGRGIDQLRPLSGETGLIPRSHGSALFARGETQALALATLAPLDEAQ 362

Query: 362 YVDS-LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            +D+   G     F++HYNF P + GE  R G  +RREIGHG LA R++ PV+P +  FP
Sbjct: 363 EMDNYAGGETTKRFILHYNFPPFSVGETGRFGGQNRREIGHGALAERSVEPVVPSSEDFP 422

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------DFI 474
           Y +R+ SE+ ES+GS+SMA+VC   +AL+DAGVP+ +PVAGI++GLV + D       ++
Sbjct: 423 YAMRVSSEVMESNGSTSMASVCSGVMALLDAGVPLKRPVAGISVGLVSEYDANNQMSRYL 482

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
            + DI G EDH G MDFK+ GT+ G+T  Q+D+K+ GI  +I+  A+ +A  GR +IL  
Sbjct: 483 TMLDIIGSEDHFGDMDFKLCGTELGVTGFQLDLKLPGIPLSILNEAIAKAVTGRTNILEV 542

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   ++  +  L EF PR+E   I PD+I  +IG GGK I+ I  ++GA ++I+DDGTV 
Sbjct: 543 MKSAIAAPKS-LSEFAPRIEKTKINPDKIGELIGPGGKNIKAIQAESGADISINDDGTVL 601

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           I +SS   +E A E++ +     EV K Y G+VV   +FGAF+   G +DGL+HIS+L+ 
Sbjct: 602 IYASSKEALERALELVNNTVGEVEVGKNYTGRVVSTTNFGAFMSLGGKKDGLIHISELAD 661

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            RV    DVVK GD V  K +  DD+G++KLS K V + 
Sbjct: 662 FRVNVVEDVVKVGDVVTAKCIGVDDKGRVKLSRKAVLKE 700


>gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9313]
 gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 723

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 421/709 (59%), Gaps = 20/709 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+V+   G+T VL T     + ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRYAPQAGGSVMMECGDTAVLVTATRS-TGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LI+R+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+ +PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-------KD 236
            V+MVE  ANQL +  V++AI FG+     +I+A   + K    + +  +        K 
Sbjct: 183 GVVMVEAGANQLPQGDVIEAIDFGYEAVCELIKAQQTILKDAGIKQVQPEPPTQDQDTKL 242

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY---FSSEHS-----SWNE 288
            + LE+  S+ I E L+   F   K  R  ++D +K K          + +     + N 
Sbjct: 243 STYLEKNCSKSIGEVLKQ--FEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANS 300

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQ 347
             + + F+ +  K++R  ++ +  R+DGR  + VR IS+  G+L  R HGS LF RG TQ
Sbjct: 301 KVLSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQ 360

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            +   TLGT  D Q +D L+      ++ HYNF P + GE   M +P RRE+GHG LA R
Sbjct: 361 VLSTATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAER 420

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+
Sbjct: 421 AIIPVLPPKDSFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLI 480

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           K+  +  IL+DI G ED LG MDFKVAGT  GITA+QMDMKI G+    +  A+ QA+  
Sbjct: 481 KEDAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPA 540

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I
Sbjct: 541 RIHILEKMLEAIDAPRTTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDI 600

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D G V IAS   A  EAA+ +I  +T      +++ G + +++  GAFV     ++G++
Sbjct: 601 EDGGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFTGTITRIIPIGAFVEILPGKEGMI 660

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           HISQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN  +
Sbjct: 661 HISQLSEARVEKVDDVVKVGDQVTVRIREIDNRGRINLTLRGVPQNGEE 709


>gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 721

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/701 (40%), Positives = 429/701 (61%), Gaps = 14/701 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            I + GR ++L TG  A Q+ GAV+   G+T +L T     + K   DF PL  +Y+E+ 
Sbjct: 7   SITFDGREIRLTTGLYAPQAGGAVMIECGDTSLLVTAT-KTTKKQAADFLPLICDYEEKL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGG++RRE RP E   LI+R+IDR +RPLF    ++E Q++ + +  D      
Sbjct: 66  YAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
           V+ +  AS A +L+ +PF GP+   +V  I   ++LNP   E ++G LD+ V+G+ + ++
Sbjct: 126 VLGVTGASIATLLAEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAGSPEGIV 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEEEMS 245
           M+E  ANQLSE   ++AI FG+     +I+A   L K    K+   ++ ++   L   + 
Sbjct: 186 MIEAGANQLSEQDTIEAIDFGYEAVSELIKAQENLLKDLGIKQVKPLEPEEDKALATYLE 245

Query: 246 QMIKE--DLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIVSVF 295
           +   +  DL +  F   K  R  ++D ++ ++   +     ++      S NE  I S F
Sbjct: 246 KNCTKPIDLILKKFDQSKEERDLELDKIELEVQTKIDSLKDDNQLKVLTSENEKLIHSDF 305

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVTL 354
           + +  K++R+ ++++  R+DGRD + VR ISA  G+L  R HGS+LF RG TQ +   TL
Sbjct: 306 KKLTKKLMRSQIINEGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL 365

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA RAI PVLP
Sbjct: 366 GTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAERAITPVLP 425

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL+K+G +  
Sbjct: 426 GKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEVR 485

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+  +++  A+++A+  RLHIL +
Sbjct: 486 ILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPVSVISDAIKKARPARLHILEK 545

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D G V 
Sbjct: 546 MQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVT 605

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+VHISQLS 
Sbjct: 606 IASHDGAAAEEAQKIIEGLTRKVHEGEIFPGVVTRIIPIGAFVEILPGKEGMVHISQLSE 665

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 666 ARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVAQNGG 706


>gi|227872010|ref|ZP_03990395.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
           F0268]
 gi|227842153|gb|EEJ52398.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
           F0268]
          Length = 695

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/690 (40%), Positives = 432/690 (62%), Gaps = 9/690 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +E AGR L ++  R+  QS+GA L  YG+T VL+T       +DG DFFPL+V Y+E+ Y
Sbjct: 1   MELAGRTLTVDVDRVCAQSNGAALMHYGDTTVLSTCTASAKPRDGIDFFPLSVEYEEKMY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VGK PGG+ +RE R ++N IL +R+IDR +RPLF K Y+N+  +   V+  D ++SP +
Sbjct: 61  SVGKFPGGFKKREGRASDNAILTARVIDRPMRPLFPKDYRNDVLLNNLVLSVDQDASPEL 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++M+ +S +  LS +PF+GP    Q+  + G++V+NP   E     L L V+ T++ V+M
Sbjct: 121 LAMLGSSLSTCLSDVPFDGPCATTQIGMVGGEFVVNPGNGEKAVSDLLLTVASTKEKVIM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQ 246
           +E  AN+L E  +++AI   H+  + +I     + + C KE    + S    +L  +M +
Sbjct: 181 IEAGANELPEAKMIEAIYLAHDVNQQIIGFFESIIEECGKEKHSYVSSAIPEELFAKMKE 240

Query: 247 MIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           ++K E++  + F  +K  R   +  L +++V  F  +  +     +       + K VR 
Sbjct: 241 VVKPEEMEKAVFTDDKAERDANVSLLSERLVEAFQDDEEAL--AILPDAIYQYEKKTVRK 298

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L    R DGR  + +R + A+V LL R HGS++F RG TQ + + TL    + Q V+ 
Sbjct: 299 MILKDHKRPDGRAIDEIRKLEAEVDLLPRVHGSAMFKRGQTQIMNITTLAPLSEVQKVEG 358

Query: 366 LSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           L+       ++  YNF   + GE      P RREIGHG LA +A+ PVLP   +FPY +R
Sbjct: 359 LNEFETEKRYLHQYNFPGYSVGEAKASRGPGRREIGHGALAEKALIPVLPSVEEFPYAIR 418

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGD 482
            VSE  ES+GS+SMA+ C S ++LM AGVPI KPVAGI+ GLV     D++++L+DI G 
Sbjct: 419 SVSETMESNGSTSMASTCASCMSLMAAGVPIKKPVAGISCGLVTGDSDDEYLVLTDIQGL 478

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN-EMSKVLSE 541
           ED  G MDFKV GT+ GITA+QMD+KI G++  I+  A+++A+  RL I+N  M + ++E
Sbjct: 479 EDFFGDMDFKVTGTEDGITAIQMDIKIHGLTRPIVEEAIRRAREARLFIMNGVMKEAIAE 538

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            R +L  + P++  M+I P++I +VIG  GK I GI+E+TG K++IDD+GTV I+ ++L 
Sbjct: 539 PRAELSPYAPKILTMSINPEKIGDVIGKQGKTINGIIEETGVKIDIDDNGTVSISGTNLP 598

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++E A+++I SI +  E  +I++G VV++MDFGAFV     +DG++HIS+LS +RV K  
Sbjct: 599 DLERAKKIIESIVNDIEPGQIFEGTVVRMMDFGAFVQLSPNKDGMIHISKLSDQRVNKVE 658

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           DVV  GD V VK+L+ D  G+I LSM+  D
Sbjct: 659 DVVHIGDKVRVKVLEVDKMGRINLSMRPQD 688


>gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9902]
 gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902]
          Length = 721

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/704 (41%), Positives = 419/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T    +  +DG DF PL  +Y+
Sbjct: 4   KTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSK-GRDGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y+RRE+RP E   L  R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYMRREARPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PSDVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-----AKMCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG+   + +I+A   L      K    E    D+   +
Sbjct: 183 GVVMVEAGANQLPEGDVIEAIDFGYEAIQELIKAQETLLKDLGIKQVKPEAPKEDTTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY---FSSEHS-----SWNEGE 290
            LE++ ++ I   L    F   K  R   ++ +K            + +     S +   
Sbjct: 243 YLEKQCTKAISAVLSK--FEQSKEDRDNGLEAVKADAAEAIAALKEDDAVRQAVSSSSKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAI 349
           + + F+ +  K++R  +L    R+DGR  + VR ISA  G+L R  HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L       ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP+   FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G D  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+   +M  A+ QA+  RL
Sbjct: 481 GKDIKILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKVMAEAVNQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEMFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 743

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/706 (42%), Positives = 446/706 (63%), Gaps = 12/706 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F    V  +  G+ + +E+GR+A Q+ G V    G TVVL TV   + L+  + FFPLT
Sbjct: 5   IFTPTRVTCQVGGKEIIIESGRMANQAHGEVWIQCGGTVVLVTVC-SQPLEFDKGFFPLT 63

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L++R+IDR IRPLF K    + QV+ +V+ 
Sbjct: 64  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVARLIDRPIRPLFPKGLNEDVQVLASVIS 123

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+   V+++  ASAALMLS LPFEGPV G ++  + GQ+VLNP  ++  Q  L++  
Sbjct: 124 ADQENESDVLALTGASAALMLSPLPFEGPVAGGRIARVGGQFVLNPTFEQQAQSDLNIVF 183

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           + + DA+ MVE +A  +SEDV+++A+ +G  +  P++E   KL ++C K  +     +D 
Sbjct: 184 AASGDALTMVEGDARFISEDVIIEALEWGRLQILPLVEIQHKLRELCGKPKMNFTPHQDD 243

Query: 238 SKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIV 292
             L   + ++   + +  +  +PEK  R      +K K++    ++     +      + 
Sbjct: 244 EALVACVHELALANGMEEALRVPEKMARKDARKAVKDKVMETLKADPAWAENEAALKAVS 303

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +   ++ K+VR  ++++  R+DGRD+ TVR I  Q GLL R HGS+LF RG+T+++VV 
Sbjct: 304 DILGGLEKKLVRARIVNEGTRIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSLVVA 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+  DEQ +DSL+G     FM+HYNF P + GEV  +   SRREIGHG LA +++ PV
Sbjct: 364 TLGSSTDEQRMDSLTGDVTKRFMLHYNFPPFSVGEVKPV-RVSRREIGHGALAEKSLRPV 422

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FP+TLR+V+E  ES+GSSSMA VCG SL+LMDAGVP+S PVAG+AMGL+K+G+ 
Sbjct: 423 LPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEGEK 482

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           FI+L+DI GDED LG MDFK+AGT  G+T +QMD+KI G++  IM  A+QQA+ GRLHIL
Sbjct: 483 FIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTEIMRTAMQQAREGRLHIL 542

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            EM+K ++  R +L  + P+   + + PD IR +IG GGK I+ I   TGA V+I+D G 
Sbjct: 543 EEMAKAIASPRKELSRYAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDIEDSGR 602

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + +   +E AREM+      P++ K Y  +V K+M+ GA V      + LVH+SQL
Sbjct: 603 VSIFAPTAEALEKAREMVSYYDQRPDLGKNYNAKVRKIMEIGAIVEVLPNVEALVHVSQL 662

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGKP 697
              RV +  DV + G+ + VK+++ +   +I+ S K V  +  G P
Sbjct: 663 DVNRVEQPGDVARLGEDMLVKVIEINGD-RIRASRKAVLLEEQGHP 707


>gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 755

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/697 (44%), Positives = 447/697 (64%), Gaps = 6/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    IEW GR L LETG+IARQ+DG+V+  YG+T +L TVV  +  ++  DF PL 
Sbjct: 1   MFEIIKKSIEWGGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKK-EEIVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  ++ N++ +
Sbjct: 60  VQFIAKSYAMGRIPGGFFKREGKPSDRETLISRVIDRSIRPLFLEGFHDEISIVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQ-GSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E +  SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFIIAGVLVGCDGNNNYILNPSVQEMKVSSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG + ++LMVE EA +L E+ +L+AI FGH   +PVI+ I + A     +       D S
Sbjct: 180 SGDERSILMVESEAKELPEENILNAIKFGHEHLQPVIKLIKEFADTIGNKFDSFAPIDIS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +++ +   +D   +     K  R + ++ ++  +++      +  +E  I    ++ 
Sbjct: 240 DIMQDL-EKHSKDFEEAYSQTVKQERAQTLETIRNNILNPLKE--AGKDEKLITQAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  ++R ++ +K  R+DGR  + +R I  +V +L RTHGS+LF RG TQA+VV  LGT +
Sbjct: 297 ERSLLRKIIREKGTRIDGRKYDEIRQIEVEVDILSRTHGSALFTRGSTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A G+ S + AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGDASAIRAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD +D++ILSD
Sbjct: 417 FPYTIRVVSEIMESDGSSSMATVCGTSLALMDTGVPIKSPVAGIAMGLIKDKNDYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  GITA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGITALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNSV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE    +    PR+    I  D+I   IG  GK IR + E++ AK+ I DDG V + + 
Sbjct: 537 ISEHSDDVKGHAPRMVSFYIDKDKISAAIGAKGKNIRSVCERSNAKIEIGDDGKVSVFAM 596

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S AE E A+ M+       E   I   +VVK+      +     R G +HIS+++ + + 
Sbjct: 597 SSAEAEIAKNMMIDSITELEQGAIVDVKVVKIDKSIVELELFNGRKGKMHISEVANQHIE 656

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
               ++K+GDT    ++DF+  G  KLS + VDQ TG
Sbjct: 657 SIESILKQGDTFKALVIDFEKGGCPKLSRRRVDQETG 693


>gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9312]
 gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312]
          Length = 721

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/709 (40%), Positives = 431/709 (60%), Gaps = 18/709 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L TG  A Q++G+V+   G+T +L T     + K+  DF PL  
Sbjct: 1   MEGQNKSITFDGREIRLTTGLYAPQANGSVMIECGDTSLLVTAT-KTTKKEVADFLPLIC 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+ YA G+IPGG++RRE RP E   LISR+IDR +RPLF    ++E Q++ + +  D
Sbjct: 60  DYEEKLYAAGRIPGGFMRREGRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
                 V+++  AS A +L  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G
Sbjct: 120 ERVPADVLAVTGASIATLLGEIPFHGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-----VIDSK 235
           + D ++M+E  ANQLSE   ++AI FG+     +I++   L K    + +       D+ 
Sbjct: 180 SPDGIVMIEAGANQLSEQDTIEAIDFGYESVTELIKSQVDLLKDLGIKQVKSSAPEEDNT 239

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWN 287
             S LE+  ++ I+  L+   F   K  R  +++ +K      +     ++      S N
Sbjct: 240 LPSYLEKNCTKGIELVLKK--FDQSKDERDLELEKIKVDTQAKIESLKDDNELKVLLSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDT 346
           +  + S F+ +  K++R+ +++   R+DGR+ + VR ISA  G+L  R HGS+LF RG T
Sbjct: 298 DKLLSSDFKKLTKKLMRSQIINDGKRVDGRELDEVRKISASAGILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPFSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+   V+G AMGL
Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKALVSGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+S +++  A+++A+ 
Sbjct: 478 IKEGKEIRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLSVSVISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RLHIL +M + + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARLHILEKMQEAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFTGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN+G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVSQNSG 706


>gi|297623850|ref|YP_003705284.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
           DSM 17093]
 gi|297165030|gb|ADI14741.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
           DSM 17093]
          Length = 726

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/695 (43%), Positives = 429/695 (61%), Gaps = 10/695 (1%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
                   GR L +ETG+ A+   G+V   YG+TVVL T     +  D  DF PLTV Y+
Sbjct: 7   KRYSTLLGGRELIIETGKYAKLVAGSVTVRYGDTVVLVTAHMSDTAADT-DFLPLTVEYE 65

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA+GKIPG + RRE RP     L +R+ DR IRPLF K  +NE QVII V+  D E+
Sbjct: 66  ERHYAIGKIPGSFQRREGRPGTQATLNARITDRQIRPLFPKGLRNEVQVIITVLSADREN 125

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +++ + ASAAL +S +P++GP     V Y++GQYVL P L     S L+L V+ ++D
Sbjct: 126 DPAMIAAIGASAALSISNIPWDGPTACVSVGYVDGQYVLYPSLQTLADSQLELTVAASED 185

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           AVLMVE  A++L ED ++ AI F   E + VIE I ++     +E + ++       E++
Sbjct: 186 AVLMVEASADELPEDTMVGAITFAQREMQGVIELIKRMRAEIGQEKLPVEPPLSPSEEDK 245

Query: 244 ---MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY----FSSEHSSWNEGEIVSVFE 296
                + +   L+     P K  R  +   L+  ++S      ++E  +     +   F 
Sbjct: 246 ERLYQEAVAAGLKEVLLTPSKKERSAKTKALRDALISKHVPEVANEEDARRVALLKEAFA 305

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
               +  R ++L++ +R DGR  E +R I  +VG+L +THGS++F RG+TQ + V TLGT
Sbjct: 306 SAVQRESRRMILEEDLRADGRAPEDIRPIWIEVGVLPKTHGSAVFTRGETQVLGVTTLGT 365

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            +D++ +D L       FM+HYNF P +TGEV R+   SRRE+GHG LARRA+  ++P  
Sbjct: 366 GKDDRLIDDLGLETSETFMLHYNFPPFSTGEVKRLRGVSRRELGHGNLARRALERMMPSQ 425

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
             F Y +R+V+E  ES+GSSSMA+VC ++L++MDAGVP+ KPVAGIAMGL+K+GD + IL
Sbjct: 426 DTFGYVVRVVAETLESNGSSSMASVCAATLSMMDAGVPLKKPVAGIAMGLIKEGDTYKIL 485

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G ED LG MDFKV GT  G+TA+QMD+KI GI+  IM  AL+QA+ GR HILN M 
Sbjct: 486 SDILGSEDALGDMDFKVTGTHDGVTALQMDIKIKGITPEIMRAALEQARVGRRHILNLMD 545

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           +VLS  R ++ +  PR+  + IP D+I  VIG GGK IR + E  G +++I++ G VKI 
Sbjct: 546 EVLSAPRSEVSKNAPRILTVQIPVDKIGAVIGPGGKQIREL-EALGVQIDIEESGLVKIY 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S   +  EA RE I ++T  PEV K Y G+V K+ +FGAFV      DGL+HISQ++ ER
Sbjct: 605 SEEASAAEAVREQIEALTATPEVGKTYDGRVAKITEFGAFVTLFPGTDGLLHISQIAEER 664

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           V    D +K GDT+ VK+   D RGK+ L    ++
Sbjct: 665 VHNIEDYLKVGDTLKVKIAGIDSRGKLDLVRPELE 699


>gi|312885678|ref|ZP_07745313.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
           DSM 18603]
 gi|311301885|gb|EFQ78919.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
           DSM 18603]
          Length = 715

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/706 (40%), Positives = 436/706 (61%), Gaps = 11/706 (1%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           ++      +   GR +++ETG++A+Q+DG+V+   G+T++LATVV     K+G DF PL+
Sbjct: 3   YNAIKKVFDLGDGRTIEIETGKLAKQADGSVVVKMGDTMLLATVVSTPEAKEGVDFLPLS 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+LRRE+R ++ E+LISR++DR++RPLF   Y  + QV+I+++  
Sbjct: 63  VDYQEKYAATGRIPGGFLRREARLSDYEVLISRLVDRALRPLFPDDYHADVQVMISLISA 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++ +AASAA+ +S +PF GP+   +V  I+G+ V+NP + + +  SL+  V+
Sbjct: 123 DKNIMPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGKLVINPTVSDLERASLEFIVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI---DSKD 236
           G+   + MVE E +++ E  +++AI F H+  K  ++A  +LA   AK  +         
Sbjct: 183 GSASDINMVEGECSEIQEAELVEAIKFAHDAIKIQVQAQVELAAEVAKAKVKRVYSHEHS 242

Query: 237 FSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
              L++++     + +   +     K  R +   +L+K++V+    +    ++      F
Sbjct: 243 NEDLKKQVFADTYDKVYAIAASASSKDERSEAFKNLQKEVVASLGEDADDVSKFLAKKYF 302

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D+Q   VR ++LD+  R+DGR +  +R I ++VG L   HGS++F RG+TQA+  VTLG
Sbjct: 303 HDVQYDAVRNLVLDEGKRLDGRTTTQIRPIWSEVGYLPAAHGSAVFTRGETQALTTVTLG 362

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            ++DEQ +D         F++HYNF   +TGEV       RREIGHG LA R++  VLP 
Sbjct: 363 AKDDEQMIDGAFINGYQKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKQVLPD 422

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDF 473
             + PYT+RIVS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMGL+   +G  +
Sbjct: 423 ENENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITNPEGTKY 482

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI GDEDHLG MDFKV GT+ GI A QMD+KI G+S  ++  AL QAK GRLHILN
Sbjct: 483 AILSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLSYEVLSKALDQAKEGRLHILN 542

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--- 590
           EM K +   R       PR+  M I  + I  VIG GGK+I+ +  ++GA ++I++    
Sbjct: 543 EMKKTIDIPRDDYKAHAPRIVSMRIDKEFIGAVIGPGGKIIQEMQRESGATISIEEKDNQ 602

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G ++I   +   I+ A   IR I   PEV +IY+G+V  +M FGAFV     +DGL+HIS
Sbjct: 603 GIIQIFGDNKESIDKAVTRIRQIVAKPEVGEIYEGKVRSIMPFGAFVEIMPGKDGLLHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           ++  +R+     + + GD V VKLLD D +GK+KLS K +     +
Sbjct: 663 EIDHKRIETMDGIFEIGDEVRVKLLDVDKQGKLKLSRKALLPRPPR 708


>gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
           43644]
 gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
           43644]
          Length = 766

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/704 (41%), Positives = 426/704 (60%), Gaps = 13/704 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              VE     + L LETG++A+Q+ G+V+   G T+ L  VV     ++G DFFPL V Y
Sbjct: 15  PVRVEATIGDKLLILETGKLAKQATGSVVVQVGGTMSLVAVVTAP-GREGLDFFPLQVEY 73

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+++RE RPT  +IL SR+IDR IRPLF + Y++E Q+  + +  D  
Sbjct: 74  REKVYAAGKFPGGFIKREGRPTTKDILTSRLIDRPIRPLFPEWYRDEVQIQASPISADRI 133

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P V+SM+ ASAAL L+  PF GPV   +V  I+G+ V  P  +E +   LDL V+ T 
Sbjct: 134 NDPDVLSMIGASAALCLTPAPFLGPVGSIRVGRIDGRLVPLPTAEEMEQSDLDLVVASTT 193

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
             ++M+E    +L E  + DAI+  H   + VI    +L       P+         L +
Sbjct: 194 SKIVMIEGFGQELPESEMFDAIMKAHEYNQAVIALQHELRAAVGLPPMEPPPPRHDPLVD 253

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--------HSSWNEGEIVSV 294
            + Q   +++R +  I  K  R   +D L+ ++V+  ++          +   E  + + 
Sbjct: 254 YLYQRYGDEIRQAKRIVAKLERYAVMDQLRARVVAETTAAPVPGVGDPETPPTELAVKAA 313

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F++ + +VVR ++LD  +R DGR  + +R IS +VGLL + HGS+LF RG+TQA+V   L
Sbjct: 314 FKEAETRVVRAMILD-GLRSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQALVTTVL 372

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  DEQ +D +       FM+ YN    A GEV  +  P RREIGHG LA R++ PVLP
Sbjct: 373 GTAADEQRIDGIMDEYTKKFMLDYNMPSFAVGEVRPIRGPGRREIGHGALAERSVAPVLP 432

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDD 472
             A+FPYT+R+VS+I ES+GSSSMA+VCG++L+LMDAGVPIS PV GI++GLV D   D 
Sbjct: 433 DPARFPYTIRVVSDILESNGSSSMASVCGATLSLMDAGVPISDPVGGISIGLVWDEPTDR 492

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++L+DI GDEDH G MDFKVAGT  G+T +Q+D+K  GIS  I+   L QA   R+ IL
Sbjct: 493 FVLLTDIIGDEDHYGDMDFKVAGTQRGVTGIQLDLKNLGISPRIVRETLDQALEARMEIL 552

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M + +   R  + E  PR+  + + P++I  +IG GGK IR + E+TGAK+ ID+ G 
Sbjct: 553 RTMLRSIKRPRDHISENAPRLIQIQVNPEKIGLIIGPGGKTIRRLEEETGAKIEIDNSGV 612

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           + I+       + AR+ I+ +T+  +V KIY G+V  + DFGAFV     +DGLVHIS+L
Sbjct: 613 ITISCVRAEGAQDARDRIQGMTEGVQVGKIYDGRVSSIKDFGAFVEILPGKDGLVHISEL 672

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +   V+  +DV K GD + VK++  D++ ++KLS K      G+
Sbjct: 673 TEGYVSSVADVCKVGDVMPVKVILVDEQDRVKLSRKAALAELGQ 716


>gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. AS9601]
 gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. AS9601]
          Length = 721

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/709 (40%), Positives = 426/709 (60%), Gaps = 18/709 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +     I + GR ++L TG  A Q+ G+V+   G+T +L T       K+  DF PL  
Sbjct: 1   MEGQNKSITFDGREIRLTTGLYAPQASGSVMIECGDTSLLVTATKTAK-KEPSDFLPLIC 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+ +A G+IPGG++RRE RP E   LI+R+IDR +RPLF     +E Q++ + +  D
Sbjct: 60  DYEEKLFAAGRIPGGFMRREGRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
                 V+++  AS A ++  +PF GP+   +V  I   ++LNP   E ++G LD+ V+G
Sbjct: 120 ERVPADVLAVTGASIATLVGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVVAG 179

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           + D ++M+E  ANQLSE   ++AI FG+     +I++   L +    + I     +  K 
Sbjct: 180 SPDGIVMIEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLQDLGIKQIKPSEPEEDKT 239

Query: 240 ----LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM---VSYFSSEHS-----SWN 287
               LE+  ++ I+  L+   F   K  R  +++ +K +    +     ++      S N
Sbjct: 240 LPSYLEKNCTKPIELVLKK--FDLSKEERDLELEKIKTETQSKIDSLKDDNQVKVLTSEN 297

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDT 346
           E  + S F+ +  K++R+ +++   R+DGRD + VR ISA  G+L  R HGS+LF RG T
Sbjct: 298 EKLLHSDFKKLTKKLMRSQIINDGKRVDGRDLDEVRKISASAGILPKRVHGSALFQRGLT 357

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q +   TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RREIGHG LA 
Sbjct: 358 QVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGETRPMRTPGRREIGHGALAE 417

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY LR+VSE+  S+GS+SM +VCGS+L+L+DAGVP+  PV+G AMGL
Sbjct: 418 RAIIPVLPGKETFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLLDAGVPLKAPVSGTAMGL 477

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K+G +  IL+DI G ED LG MDFKVAGTD GITA+QMDMKI G+  +I+  A+++A+ 
Sbjct: 478 IKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKITGLPVSIISDAIKKARP 537

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R+HIL +M   + + +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++
Sbjct: 538 ARIHILEKMQGAIDKPQESLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 597

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+D G V IAS   A  E A+++I  +T      +I+ G V +++  GAFV     ++G+
Sbjct: 598 IEDGGIVTIASHDGAAAEEAQKIIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGM 657

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           VHISQLS  RV +  DVV++GD V V++ + D RG+I L+++ V QN G
Sbjct: 658 VHISQLSEARVERVEDVVRQGDEVTVRVREIDSRGRINLTLRGVGQNNG 706


>gi|254425324|ref|ZP_05039042.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
 gi|196192813|gb|EDX87777.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
          Length = 716

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/694 (41%), Positives = 425/694 (61%), Gaps = 14/694 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I   GR ++L+ G  A Q+ G+VL + G+T VL T     S ++G DF PL V+Y+ER
Sbjct: 6   KSISIDGRDIQLKAGLFAPQAGGSVLISSGDTAVLVTATRS-SGREGIDFLPLLVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E   L SR+IDR +RPLF +  +++ Q++   +  D +  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPERATLTSRLIDRPMRPLFPQWIRDDIQIVATTLSMDEDVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V++   AS A++L+ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V
Sbjct: 125 DVLAATGASIAVLLAEIPFNGPMATVRVGLVGDDFIINPTYQEIENGELDLIVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-PIVIDSKDFSKLEEEM 244
           +MVE  ANQL E  V++AI FG+   + +I+A   L +    E P          LE  +
Sbjct: 185 IMVEAGANQLPEQDVIEAIDFGYEVVRDLIQAQLDLVEELGLERPTEPAPVADPSLEAFL 244

Query: 245 SQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSW--------NEGEIVSV 294
           S     D++      +  K  R  ++D +K  +    +++            N   +   
Sbjct: 245 SDRATADIKEVLKQFDQSKSERDSKLDAIKATIAEEIAAKDEDDAVRIAIDSNSKALGKS 304

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVT 353
           F+ +  K++R+ +L++ VR+DGR  + +R I+ + G+L  R HG+ LF RG TQ + V T
Sbjct: 305 FKSLTKKLMRSQILEEGVRVDGRKLDEIRKITCRTGVLPTRVHGTGLFRRGLTQVLSVTT 364

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT  D Q +D L   +   ++ HYNF P + GE   M +P RRE+GHG LA RA+ PVL
Sbjct: 365 LGTPGDAQMMDDLHPGEEKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALIPVL 424

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPY +R+VSE   S+GS+SM +VCGS+L+LMDAGVPI +PV+G AMGL+++GD+ 
Sbjct: 425 PSQEDFPYVIRVVSECLSSNGSTSMGSVCGSTLSLMDAGVPIMQPVSGAAMGLIREGDEV 484

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI G ED LG MDFKVAGT+SGITA+Q+DMKI G+   ++  A+ QA+  RLHIL 
Sbjct: 485 RILSDIQGIEDFLGDMDFKVAGTESGITALQLDMKITGLPMEVIGEAINQARPARLHILE 544

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           +M   L + R ++  + PR+  M + PDQI  VIG GGK I+ I E TGAKV+I+DDGTV
Sbjct: 545 KMLGELDKPRTEVSPYAPRLLTMQVKPDQIGMVIGPGGKQIKAITEATGAKVDIEDDGTV 604

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I++    + + A++MI  IT VPE   +Y G+V +V+  GAFV     ++G++HISQL+
Sbjct: 605 TISAVDSDKAKQAQKMIEGITHVPEAGNVYMGKVTRVIPIGAFVEIMPGKEGMIHISQLA 664

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             RV K  D V   D V VK+ + D+RG++ L+ 
Sbjct: 665 DYRVNKVEDEVDVDDEVLVKVREIDNRGRVNLTR 698


>gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           8102]
 gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8102]
          Length = 721

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/704 (41%), Positives = 419/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  I + GR ++L TGR A Q+ G+VL   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRS-GGREGIDFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG Y RRE RP E   L +R+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSYQRREGRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +L+G+PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLIVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-----DFS 238
            V+MVE   NQL E  V++AI FG+     +I+A  +L K    E +  ++        +
Sbjct: 183 GVVMVEAGGNQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGIEQVKPETPTQDTTVPA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY---FSSEHS-----SWNEGE 290
            LE++ ++ I E L+   F   K  R K +D +K +          + +     + N   
Sbjct: 243 YLEKQCTKAISEVLKK--FDQTKDERDKALDAIKAEAAEAIAGLKEDDAIRVATASNSKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAI 349
           + + F+ +   ++R  +L    R+DGR  + VR ISA  G+L R  HGS LF RG TQ +
Sbjct: 301 LGNSFKALTKTLMRQQILKDGKRVDGRALDEVRAISALAGVLPRRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L  +    ++ HYNF P + GE   M +P RREIGHG LA RAI
Sbjct: 361 STATLGTPSDAQEMDDLHPSTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVP+  PV+G AMGL+K+
Sbjct: 421 LPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           GDD  IL+DI G ED LG MDFKVAG++ GITA+QMDMKI G+    +  A+ QA+  RL
Sbjct: 481 GDDIRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKTIAEAINQARPARL 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M + +   R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMLEAIDTPREGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  + A+++I  +T      +++ G + +++  GAFV     ++G++HI
Sbjct: 601 SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V Q+
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQS 704


>gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL2A]
 gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A]
          Length = 722

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/706 (40%), Positives = 418/706 (59%), Gaps = 18/706 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR +KL TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTKSVSFDGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKS-SGREGVDFLPLMCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +++G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----S 238
            V+MVE  ANQLSE  V++AI FG+     +I A  ++ K    +  +  + +      +
Sbjct: 183 GVVMVEAGANQLSEQDVIEAIDFGYEAITELINAQKEVLKESGIKQEMPKAPEIDDTIST 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290
            L++  ++ I E L+   F   K  R  +I+++K  + +                 N   
Sbjct: 243 YLDKNCTKSISEVLK--NFDQTKEERDNKIEEIKISISAKIDGLKDDNAVKKSLSLNNKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + ++ +  K++R  ++ +  R+DGR+   VR I A   +L  R HGS+LF RG TQ +
Sbjct: 301 LENSYKALTKKLMREQIIKEGKRVDGRELNEVRAIDADAAVLPNRVHGSALFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M  P RRE+GHG LA RA+
Sbjct: 361 STATLGTPSDAQEMDDLNPNTDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SMA+VCGS+LALMDAGVP+  PV G AMGL+K+
Sbjct: 421 IPVLPAKDTFPYVLRVVSEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+    +  A+ QA   R 
Sbjct: 481 GKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPIETIGEAINQALPART 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   +   +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILGKMLDAIETPKDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      +I+ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQRIIEGLTRKVHEGEIFPGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN G
Sbjct: 661 SQLSEARVEKVEDVVKVGDQVTVRVREIDNRGRINLTLRGVSQNGG 706


>gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
 gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
          Length = 743

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/709 (40%), Positives = 438/709 (61%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE A GR + +ETG++A+Q+DGAV    G TV+LATV   +    G DF PL
Sbjct: 1   MLNPINKTIELADGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V + +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNVILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V  I+G+YV+NP   E ++  +D+ V
Sbjct: 121 ADGEDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKADIDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T D ++MVE E +++ E  +L+AI   H   K   +A  +L++ C K  +V       
Sbjct: 181 GATLDNIMMVEGEMDEVQESEMLEAIKVAHEAIKVQCQAQLELSEACGK--LVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IV 292
             ++E+ + + E      +       +K+ R +  + + ++  + FS E  +  + E I 
Sbjct: 239 VNDDELRKDVHEKCYAKAYAVATSGTDKHQRAEAFEAVVEEYKAQFSEEELTDEKVEMIG 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKADEKMIDDVLNHGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G
Sbjct: 419 IPT--DYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKG 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 QNYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++ +   E R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA + I+++
Sbjct: 537 ILGKIMEAQPEVRPDLKPHAPRIETMTIGKEFIGAVIGPGGKIIQGIQEKTGAVITIEEE 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I+ ++ A I+AA   I++I  VPE+ +IY+G++  +M +GAFV F   +DGL+
Sbjct: 597 DGVGKIEISGTNKATIDAAIRSIKAIVAVPEIGEIYEGKISSIMPYGAFVEFMPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+       +KEGDT+ VKL+D D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETVEQAGLKEGDTISVKLVDIDAKTGKFKLSHKVLLPKP 705


>gi|78358207|ref|YP_389656.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123754803|sp|Q30WI5|PNP_DESDG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78220612|gb|ABB39961.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 750

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/697 (44%), Positives = 452/697 (64%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F    +     G+ + +ETGR+A Q+DGAV    G TVVL TV      ++   FFPL 
Sbjct: 4   LFGAKRLTATVGGKEIIMETGRLANQADGAVWIQCGGTVVLCTVCTQPLERE-ISFFPLV 62

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V+Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR +RPLF K + NE Q++ NV+ 
Sbjct: 63  VDYTEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPLRPLFPKGFTNEVQILANVIS 122

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E+   V+++  +SAA+MLS +PFE PV GA+V  I+G++VLNP + E  +  L+L V
Sbjct: 123 ADQENDSDVLALCGSSAAVMLSSVPFEAPVAGARVCRIDGEFVLNPTITEAAKADLNLVV 182

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDF 237
           +  +DA++MVE EA+ + E+V+  A+ + H E +P+I+   KL ++  K  I  +  ++ 
Sbjct: 183 AANRDALVMVEGEADFVPEEVIAQALEWAHREVQPIIDMQEKLRELAGKAKIEFVAPEED 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVS 293
           ++L+E+   +   DL  +  + EK  R +    +K+K+ +    +     +      +  
Sbjct: 243 TELKEKAEALATADLAAALQVREKMARKEAKKAVKEKVKAALLQDPAFAETPERLAALGD 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   ++ ++VR  +L + +R+DGRD++TVR I  + G L R HGS++F RG+T+++VV T
Sbjct: 303 ILSSLEKRIVRQRILKEGLRIDGRDTKTVRPIIIEAGALPRAHGSAIFSRGETKSLVVTT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  DEQ +DSL+G     FM+HYNF P + GEV  +   SRREIGHG LA RA+ PVL
Sbjct: 363 LGSTTDEQRMDSLTGDVTKRFMLHYNFPPYSVGEVKPV-RVSRREIGHGALAERALRPVL 421

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FP+TLR+VSE  ES+GSSSMA VCG SL+LMDAGVP+  PVAGIAMGL+K+ D F
Sbjct: 422 PSPDSFPFTLRVVSETMESNGSSSMAAVCGGSLSLMDAGVPVKAPVAGIAMGLIKEDDQF 481

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I+L+DI GDED LG MDFK+AGT  G+TA+QMD+KI G+   +M  AL QA+  RLHILN
Sbjct: 482 IVLTDILGDEDALGDMDFKIAGTAEGVTAVQMDIKIDGLPAEVMGRALAQAREARLHILN 541

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+KVL E R  L ++ P++ ++ + P+ IR +IG GGK I+ I   TGA ++I+D G +
Sbjct: 542 EMAKVLPEPRQALSKYAPQLSVVEVNPEIIRVIIGPGGKNIKAITSATGASIDIEDSGRI 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +   ++ AREM+      PE+ K Y  +V K+M+ GA V      + L+HISQL 
Sbjct: 602 SIFAPTKESMDMAREMVMYYDQRPELGKNYTAKVRKIMEIGAIVEILPNCEALIHISQLD 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           T RV KT DVV+ G  V VK+++ +D G+++ S K V
Sbjct: 662 TSRVEKTEDVVQLGQDVEVKVIEIND-GRVRASRKAV 697


>gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
 gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
          Length = 708

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/706 (42%), Positives = 442/706 (62%), Gaps = 15/706 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF++ T  +    GR + +ETG++ARQ+DGAV+   G+T++LATVV  +  K+G DF PL
Sbjct: 1   MFEITTQSVALPDGREITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+YQE+  + G+IPG + RRE R  ++EILISR++DR++RP+F   Y  +TQV+I ++ 
Sbjct: 61  SVDYQEKFASAGRIPGSFQRREGRLGDHEILISRLVDRALRPIFPDNYHADTQVMITLIS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFV 178
            D E  P  ++ +AAS+AL +S +PF GP+   +V  I+GQY +NP   + ++ ++DL V
Sbjct: 121 ADPEVQPDALAALAASSALAVSDIPFNGPISEVRVAKIDGQYKINPKTAELERATIDLIV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T+  + MVE E ++ SE  V++A+   H   K   +A  +L     K   V    +  
Sbjct: 181 AATEKDICMVEGEMDECSEAEVVEALKVAHEAIKIQCQAQKELEAKVGKT--VKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+   ++       +       P K  R +    ++ + ++ F  E +  N G I 
Sbjct: 239 THDEELRAAVRAATYDKIYEVARRQNPSKKGRSEGFKAVRDEYLASF-PEGAEVNVGLIK 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + F D++ +  R ++LD++ R+DGR  + +R ISA+ G L   HGS+LF RG+TQ++  V
Sbjct: 298 TYFHDLEWEASRRLVLDERTRLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQSLTTV 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DEQ VD       + F++HYNF   +TGEV       RREIGHG LA R++  V
Sbjct: 358 TLGTKTDEQIVDQTMFQGYSKFLLHYNFPGFSTGEVKPNRGAGRREIGHGNLAHRSLKKV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP   + PYT+RIVS+I ES+GSSSMATVC  ++ALMDAG+ I  PVAGIAMGL+ DGD 
Sbjct: 418 LPPAEENPYTIRIVSDILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLISDGDK 477

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKV GT+ GI A QMD+K+ G+S  ++  AL+QA+ GRLHIL
Sbjct: 478 YAVLSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKVDGLSYEVLAQALEQARVGRLHIL 537

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
            EM K +S+ R  L    PR  ++ I  +QI  VIG GGKV++ I + +GA VNID+   
Sbjct: 538 GEMKKGISDVRSDLKPHAPRAMVIKIDTNQIGAVIGPGGKVVQDIQKDSGAVVNIDEHDN 597

Query: 591 -GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V I ++S   ++ A   ++ I  VPEV + Y G+V  +  FGAFV F   +DGL+HI
Sbjct: 598 AGWVSIFATSKESMDKAVSRVKGIVAVPEVGETYVGKVKTIQPFGAFVEFMPGKDGLLHI 657

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           S++  ER+     V++ G+ V VKL+D D + GK +LS KV+    
Sbjct: 658 SEIKWERLETMDGVLQVGEEVTVKLIDVDKKTGKYRLSRKVLLPKP 703


>gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 574

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/575 (47%), Positives = 382/575 (66%), Gaps = 3/575 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           ++T E    GR   +ETG++A+Q++GAVL  YGETVVL T       ++G DFFPLTV+Y
Sbjct: 1   MYTFETTLGGRSFVVETGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YAVGKIPGG+++RE RP E+ IL SR+IDR IRPLF + Y+N+ Q++  V+  + +
Sbjct: 61  EEKMYAVGKIPGGFIKREGRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQD 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           ++P +  M+ AS AL +S +PF GP+ G +V  I+G++V+NP +++ ++  L+L V+G+ 
Sbjct: 121 NAPEIAGMIGASCALSISDIPFLGPIAGVRVGRIDGEFVINPTVEQREKSDLNLTVAGSY 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           DAV+MVE  AN+LSE+VVLDAI+FGH E K +++   ++ + C KE           +L 
Sbjct: 181 DAVMMVEAGANELSEEVVLDAILFGHEEIKRLVKFQQEMMEKCGKEKHQPKLFTVPEELV 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             + +   +    +    +K  R + + ++K +   +F   +   +  EI  V       
Sbjct: 241 NAIHEYTYDKFDAAVRDADKLRRDEHVAEVKAQAKEHFLELYPEMD-MEIDYVLYKTLKG 299

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +VR ++  +K+R DGR  E VR IS +VG+L RTHGS+LF RG TQ + V TLG   DEQ
Sbjct: 300 IVRHMITHEKIRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALGDEQ 359

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D +       ++ HYNF   + GE   M +P RREIGHG LA RA+ PV+P   +FPY
Sbjct: 360 VIDGIGDDTSKRYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSVEEFPY 419

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           TLR+VSE+ ES+GSSSM +VCGS+L+LM AGVPI KPV+G AMGLVKDGD + IL+DI G
Sbjct: 420 TLRLVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKKPVSGCAMGLVKDGDAYTILTDIQG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED LG MDFKVAGT  GITA+QMD+K+ G+S  I+  AL QAKRGR  IL++M + +SE
Sbjct: 480 MEDALGDMDFKVAGTPDGITAIQMDIKVDGLSREILAAALAQAKRGREFILSKMLECISE 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
              +L  + PRV  M IP D+IR+VIG GGK I+ 
Sbjct: 540 PNKELSPYAPRVNSMKIPTDKIRDVIGPGGKTIKK 574


>gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL1A]
 gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. NATL1A]
          Length = 722

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/706 (40%), Positives = 418/706 (59%), Gaps = 18/706 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR +KL TGR A Q+ G+V+   G+T VL T     S ++G DF PL  +Y+
Sbjct: 4   QTKSVSFDGREIKLTTGRFAPQAGGSVMIECGDTSVLVTATKS-SGREGVDFLPLMCDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ Q++   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++  AS A +++G+PF+GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PADVLAVTGASMATLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-----S 238
            V+MVE  ANQLSE  V++AI FG+     +I A  ++ K    +  +  + +      +
Sbjct: 183 GVVMVEAGANQLSEQDVIEAIDFGYEAITELINAQKEVLKESGIKQEMPKAPEIDDTIST 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290
            L++  ++ I E L+   F   K  R  +I+++K  + +                 N   
Sbjct: 243 YLDKNCTKSISEVLK--NFDQTKEERDNKIEEIKISISAKIDGLKDDNAVKKSLSLNNKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + ++ +  K++R  ++ +  R+DGR+   VR I A   +L  R HGS+LF RG TQ +
Sbjct: 301 LENSYKALTKKLMREQIIKEGKRVDGRELNEVRAIEADAAVLPNRVHGSALFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+      ++ HYNF P + GE   M  P RRE+GHG LA RA+
Sbjct: 361 STATLGTPSDAQEMDDLNPNTDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SMA+VCGS+LALMDAGVP+  PV G AMGL+K+
Sbjct: 421 IPVLPAKDTFPYVLRVVSEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMKI G+    +  A+ QA   R 
Sbjct: 481 GKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLPIETIGEAINQALPART 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M   +   +  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILGKMLDAIETPKDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS   A  E A+ +I  +T      +I+ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGAAAEEAQRIIEGLTRKVHEGEIFPGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN G
Sbjct: 661 SQLSEARVEKVEDVVKVGDQVTVRVREIDNRGRINLTLRGVSQNGG 706


>gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           DP4]
 gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           RCH1]
          Length = 760

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/697 (44%), Positives = 448/697 (64%), Gaps = 10/697 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           +F+   V     G+ +  ETGR+A Q+DGAV    G TVVL T     + +D   FFPLT
Sbjct: 4   IFNAMRVTATVGGKEIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDRD-LGFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           V Y E+ YA G+IPG + RRE  RP+E E L+SR+IDR IRPLF K  K+E QV+ NV+ 
Sbjct: 63  VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVIS 122

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D  +   V+++  AS AL LS +PF+GPV GA++  I+GQ+V+NP + E +   L++ +
Sbjct: 123 SDQNNDSDVLAVTGASTALGLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLNIVL 182

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DF 237
           + ++DAV+MVE EA+ + E V+++A+ +GH E +P+I+A  KL +M  K      +  + 
Sbjct: 183 AASRDAVVMVEGEASFVPEAVIVEALEWGHKEIQPLIDAQLKLREMAGKAKREFTAPVED 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVS 293
           + L   ++ +   DL V+  IPEK  R      +K+K++    ++      +     +  
Sbjct: 243 ADLAARVAALATADLDVALRIPEKMARKDARKAVKEKVMEALVADPAYAEDTTPLRAVGD 302

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +   ++ ++VR  ++ +  R+DGRD+ TVR I  + G+L R HGS+LF RG+T+++VV T
Sbjct: 303 ILSALEKRIVRERIVREGRRIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVAT 362

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  DEQ +DSL+G     FM+HYNF P   GEV  +   SRREIGHG LA +A+ P+L
Sbjct: 363 LGSSTDEQRMDSLTGDVTKRFMLHYNFAPYCVGEVKPV-RVSRREIGHGALAEKALRPIL 421

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FP+TLR+V+E  ES+GSSSMA VCG  L+LMDAGVPI+ PVAG+AMGL+K+GD +
Sbjct: 422 PLGEDFPFTLRVVAETMESNGSSSMAAVCGGCLSLMDAGVPITAPVAGVAMGLIKEGDQY 481

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI GDED LG MDFK+AGT  GITA+QMD+K+ G+  ++M  A+QQA+  RLHIL 
Sbjct: 482 VVLTDILGDEDALGDMDFKIAGTSEGITAVQMDIKVKGLPTDVMARAMQQARDARLHILG 541

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM KVL   R +L  + P+   + + PD IR +IG GGK I+ I   TGA ++I+D G V
Sbjct: 542 EMGKVLEAPRAELSAYAPQHAEVFVNPDIIRIIIGPGGKNIKAITATTGASIDIEDSGRV 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I + +L  +E AREM++      ++ K Y G+V KV++ GA V      + LVHISQL 
Sbjct: 602 SIFAPTLEAMEMAREMVQYYDQRADIGKNYTGKVRKVLEIGAIVEILPNLEALVHISQLD 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           T RV + SDV + G+ + VK+++ +   +I+ S K V
Sbjct: 662 TNRVEQASDVARLGEDMVVKVIEINGD-RIRASRKAV 697


>gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
 gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
          Length = 746

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 435/709 (61%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + +ETG++A+Q+DGAV      TV+LATV   +    G DF PL
Sbjct: 1   MLNPINKTIELGDGRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V   +G+Y++NP   E ++  +D+ V
Sbjct: 121 ADGEDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E N++ E  +L+AI   H   K   +A  +L++ C K  +V       
Sbjct: 181 AATIDNIMMVEGEMNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK--LVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IV 292
             ++E+ + + +      +        K+ R +  + + ++  + FS E  +  + E I 
Sbjct: 239 VNDDELRKDVHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIG 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +       F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKSDEKMIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G
Sbjct: 419 IP--DNYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKG 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 TNYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++ +   E+R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA V+ID+ 
Sbjct: 537 ILGKILEAQPEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I+ ++ A I+AA + I+ I  VPE+ ++Y+G++  +M +GAFV F   +DGL+
Sbjct: 597 DGVGKIEISGTNKATIDAAVKAIKGIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+       +KEGDTV VKL+D D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVLLPKP 705


>gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides
           distasonis ATCC 8503]
 gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7]
 gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
 gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides
           distasonis ATCC 8503]
 gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
          Length = 746

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 436/709 (61%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + +ETG++A+Q+DGAV      TV+LATV   +    G DF PL
Sbjct: 1   MLNPINKTIELGDGRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V   +G+Y++NP   E ++  +D+ V
Sbjct: 121 ADGEDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E N++ E  +L+AI   H   K   +A  +L++ C K  +V       
Sbjct: 181 AATIDNIMMVEGEMNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK--LVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IV 292
             ++E+ + + +      +        K+ R +  + + ++  + FS E  +  + E I 
Sbjct: 239 VNDDELRKDVHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIG 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +       F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKSDEKMIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G
Sbjct: 419 IP--DNYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKG 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 TNYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++ +   E+R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA V+ID+ 
Sbjct: 537 ILGKILEAQPEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I+ ++ A I+AA + I++I  VPE+ ++Y+G++  +M +GAFV F   +DGL+
Sbjct: 597 DGVGKIEISGTNKATIDAAVKAIKAIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+       +KEGDTV VKL+D D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVLLPKP 705


>gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
 gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
          Length = 746

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 435/709 (61%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + +ETG++A+Q+DGAV      TV+LATV   +    G DF PL
Sbjct: 1   MLNPINKTIELGDGRTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKYSAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V   +G+Y++NP   E ++  +D+ V
Sbjct: 121 ADGEDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKADIDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E N++ E  +L+AI   H   K   +A  +L++ C K  +V       
Sbjct: 181 AATIDNIMMVEGEMNEVQESEMLEAIKVAHEAIKVQCKAQLELSEACGK--LVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IV 292
             ++E+ + + +      +        K+ R +  + + ++  + FS E  +  + E I 
Sbjct: 239 VNDDELRKDVHDKCYAKAYAVATSGSGKHERSEAFEKIVEEYKAQFSEEELTDEKLEMIG 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +       F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKSDEKMIDDVLNHGYERFLLHYNFPPFSTGEAKATRGVGRREIGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G
Sbjct: 419 IP--DNYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKG 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 TNYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL ++ +   E+R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA V+ID+ 
Sbjct: 537 ILGKILEAQPEAREDLKPHAPRIETMIIGKEFIGAVIGPGGKIIQGIQEKTGATVSIDEV 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I+ ++ A I+AA + I+ I  VPE+ ++Y+G++  +M +GAFV F   +DGL+
Sbjct: 597 DGVGKIEISGTNKATIDAAVKAIKGIVAVPEIGEVYEGKISSIMPYGAFVEFMPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+       +KEGDTV VKL+D D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETVEQAGLKEGDTVSVKLVDIDPKTGKFKLSRKVLLPKP 705


>gi|296269051|ref|YP_003651683.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermobispora bispora DSM 43833]
 gi|296091838|gb|ADG87790.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermobispora bispora DSM 43833]
          Length = 773

 Score =  703 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/717 (39%), Positives = 423/717 (58%), Gaps = 34/717 (4%)

Query: 1   MFDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQ 54
           M  VHT E       +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     +  K+G 
Sbjct: 1   MEGVHTSEAVIDNGSFGTRTVRFETGRLARQATGSAVAYLDDETMVLSATTVSKQPKEGL 60

Query: 55  DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114
           DFFPLTV+ +ER YA GKIPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE Q++
Sbjct: 61  DFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQIV 120

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GS 173
             V+    +    VV++ AAS +  L+GLPF GP+ G +V  I+G++V  P   E +  +
Sbjct: 121 ATVLAIHPDHLYDVVAINAASMSTQLAGLPFSGPIGGVRVGLIDGKWVAFPTYSELENAT 180

Query: 174 LDLFVSGT-----QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIE 216
            D+ V+G        A++MVE E+               +E+VV   +       K + E
Sbjct: 181 FDMVVAGRVLEDGDVAIMMVEAESTRNTLKLVAEGAVAPTEEVVAQGLEAAKPFIKVLCE 240

Query: 217 AISKLAKMCAKEPIVID-SKDF-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           A  KLAK+  K P       D+   + E +   +K +L  +  IP K  R  +I+ +K  
Sbjct: 241 AQEKLAKVAGKAPGNYPIYPDYQDDVYEAVCAAVKSELAAALTIPGKQERELEIERVKAI 300

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
                  E     E EI   F  +  +++R  +L++ +R+DGR  + +R ++A+V ++ R
Sbjct: 301 AAEKLLPEFEG-REKEIGPAFRALTRQLMRERVLNEGIRIDGRGPKDIRQLNAEVHVIPR 359

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS+LF RG+TQ + + TL     EQ +D+L+  +   +M +YNF P +TGEV R+GAP
Sbjct: 360 VHGSALFERGETQILGITTLNMLRMEQTIDTLNPERTKRYMHNYNFPPYSTGEVGRVGAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP
Sbjct: 420 KRREIGHGALAERALLPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVP 479

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +   VAGIAMGL+ +   ++ L+DI G ED +G MDFKVAGT   ITA+Q+D K+ GI  
Sbjct: 480 LKDMVAGIAMGLIGENGKYVTLTDIIGAEDAMGDMDFKVAGTRDLITALQLDTKLDGIPA 539

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL+QA+  RL IL+ M + +      L    PR+  + +P D+I +VIG  GK+I
Sbjct: 540 EVLAGALKQARSARLAILDVMKEAIDAPAP-LNPNAPRILTLKVPVDKIGDVIGPKGKII 598

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMD 632
             I E+TGA++ I+DDGT+ I ++  A  EAA  +I  I    +PEV + Y G +VK+  
Sbjct: 599 NQIQEKTGAEITIEDDGTIYIGATDGASAEAASALINGIANPHMPEVGERYLGTIVKLAA 658

Query: 633 FGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FGAFV     +DGL+HISQ+      +R+    DV+  G+ + V++++ D RGK+ L
Sbjct: 659 FGAFVSLLPGKDGLLHISQIRKLYGGKRIDNVEDVLTVGEKIQVEVVEIDSRGKLSL 715


>gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
          Length = 743

 Score =  703 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/709 (40%), Positives = 438/709 (61%), Gaps = 19/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE A GR + +ETG++A+Q+DGAV    G TV+LATV   +    G DF PL
Sbjct: 1   MLNPINKTIELADGRTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V + +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGKASDYEILTSRLVDRALRPLFPDNYHAEVYVNVILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V  I+G+YV+NP   E ++  +D+ V
Sbjct: 121 ADGEDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKADIDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T D ++MVE E +++ E  +L+AI   H   K   +A  +L++ C K  +V       
Sbjct: 181 GATLDNIMMVEGEMDEVQESEMLEAIKVAHEAIKIQCQAQLELSEACGK--LVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-IV 292
             ++E+ + + E      +       +K+ R +  + + ++  + FS E  +  + E I 
Sbjct: 239 VNDDELRKDVHEKCYAKAYAVATSGTDKHQRAEAFEAVVEEYKAQFSEEELTDEKVEMIG 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKADEKMIDDVLNHGKERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLAHRALKRM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL+ +  G
Sbjct: 419 IPT--DYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMGLISENKG 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 QNYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALAQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++ +   E R  L    PR+E M I  + I  VIG GGK+I+GI E+TGA + I+++
Sbjct: 537 ILGKIMEAQPEVRSDLKPHAPRIETMTIGKEFIGAVIGPGGKIIQGIQEKTGAIITIEEE 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I+ ++ A I+AA   I++I  VPE+ +IY+G++  +M +GAFV F   +DGL+
Sbjct: 597 DGVGKIEISGTNKATIDAAIRSIKAIVAVPEIGEIYEGKISSIMPYGAFVEFMPGKDGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R+       +KEGDT+ VKL+D D + GK KLS KV+    
Sbjct: 657 HISEIDWKRLETVEQAGLKEGDTISVKLVDIDAKTGKFKLSHKVLLPKP 705


>gi|163783568|ref|ZP_02178558.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881188|gb|EDP74702.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 773

 Score =  703 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/688 (40%), Positives = 426/688 (61%), Gaps = 8/688 (1%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +E GR A+Q+DGAV+   G T VL T V         DF PLTV+Y+ER  A G+IP
Sbjct: 13  PIVIEVGRYAKQADGAVVVRQGGTAVLVTAVMSDEPNTEIDFTPLTVDYRERPSAYGRIP 72

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+++RE +P+E E+L SR+IDR +RPLF + + ++  V    +  D    P V+++  A
Sbjct: 73  GGFVKREGKPSEREVLASRVIDRPLRPLFPEGFFHDVVVTALTLSADDNYDPDVLAITGA 132

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEAN 193
           SAAL +S +PFEGP+ G +V  + G++V NP  +E +   L++ ++GT+DA++MVE  A 
Sbjct: 133 SAALHISRIPFEGPIAGVRVCKVGGEFVANPTYEERKDADLEIVMAGTKDAIVMVEGGAK 192

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIKEDL 252
           ++ E+V+ +A+ FGH   +  I    KL +    + +  +      +L   + +   E +
Sbjct: 193 EVPEEVITEALFFGHEAIQEAIALQEKLRESIGVQKVEFEGINLDEELVRALEEECSERI 252

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
             +  I +K  R K +  + ++ +              +   F+ +++K++R  +L + V
Sbjct: 253 VSAFAIQDKKERNKTLSHILEEFIEKHGV--PEELHFNVKYFFKKLESKLMREKILAEGV 310

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGTQR 371
           R+DGR  E +R IS ++   +R HG ++F RG TQA V VTLG  ++ Q ++++  G   
Sbjct: 311 RIDGRKPEEIRPISIEIHPFERPHGCAVFTRGQTQAYVTVTLGAPDEAQLIETIAEGEVF 370

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             FM+HYNF P + GE    G P RREIGHG LA RA+ PV+P+   FPY +R+VS+I E
Sbjct: 371 KRFMLHYNFPPFSGGEARSWGPPRRREIGHGALAERALEPVIPEEDDFPYIIRVVSDILE 430

Query: 432 SDGSSSMATVCGSSLALMDAGVPIS--KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           S+GS+SMATVCG SLAL DAGVPI   K V+GIAMGL+K+GD ++ILSDI GDEDHLG M
Sbjct: 431 SNGSTSMATVCGGSLALFDAGVPIKGGKHVSGIAMGLIKEGDRYVILSDILGDEDHLGDM 490

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  G+T++QMD+KI GI++ IM  AL+QAK GRL+IL +M + + E + +L  +
Sbjct: 491 DFKVAGTREGVTSIQMDIKIKGITKEIMTEALKQAKEGRLYILEKMYEAIPEPKKELSPY 550

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            PR+ I  +P ++   VIG GG  ++ I E+T  K+ + ++G V +   S   I+ A EM
Sbjct: 551 APRIVIYKVPEEKAALVIGPGGSNVKKIYEETEVKIWVGEEGKVFLTGYSDEAIQKAIEM 610

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I ++    EV ++Y+G+V +V  +G FV     + GL+H+S+++ + +    D    GDT
Sbjct: 611 IENLVKDVEVGQVYEGKVTRVEPYGVFVEILPGKVGLLHVSKMA-QPIKHAGDKYSVGDT 669

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           V VK+L+ DD G+ K +   +D ++  P
Sbjct: 670 VKVKVLEVDDMGRPKFTTMGLDGSSSPP 697



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 10/182 (5%)

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRNV 566
            G S+  +  A++  +     +          +R++       +    +      ++   
Sbjct: 597 TGYSDEAIQKAIEMIENLVKDVEVGQVYEGKVTRVEPYGVFVEILPGKVGLLHVSKMAQP 656

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G             + +DD G  K  +  L    +  E         EV ++Y+G+
Sbjct: 657 IKHAGDKYSVGDTVKVKVLEVDDMGRPKFTTMGLDGSSSPPEK------KIEVGEVYEGK 710

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V +V  +G FV     + GL+H+  +  ER     +V + GD V VK+ + D+RG+ KL+
Sbjct: 711 VTRVEPYGVFVEILPGKVGLLHVDNM-KERTRDAREVFEVGDKVKVKVFELDERGRPKLT 769

Query: 687 MK 688
            K
Sbjct: 770 DK 771


>gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 774

 Score =  703 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/708 (39%), Positives = 435/708 (61%), Gaps = 18/708 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +V +  I+   GR +K+ETG++A+Q+DGAV  T G TV+LATV   +    G DF PL
Sbjct: 32  MLNVVSKTIDLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPL 91

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A+G+ PGG+ RRE + ++ EIL  R++DR++RPLF   Y  E  V + +  
Sbjct: 92  QVEYKEKYSAIGRFPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFS 151

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V  ++G+Y++NP  ++ +   +DL V
Sbjct: 152 ADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMV 211

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T D ++MVE E +++ E  +L+ I   H   K   +A  +L++   K  +        
Sbjct: 212 GATMDNIMMVEGEMDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGK--LQKREYSHE 269

Query: 239 KLEEEMSQMIKEDLRV-----SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             +E++ + + ++        +     K+ R +  + + ++  + ++ E  +     I  
Sbjct: 270 VNDEDLRKKVHDECYARAYEVATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIAR 329

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VT
Sbjct: 330 YYHDVEKEAMRRAILDEGKRLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVT 389

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++
Sbjct: 390 LGTKSDEKLVDDVLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMI 449

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGV I KPV+GIAMGL+ +  G 
Sbjct: 450 PT--DYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGK 507

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QAK+GRLHI
Sbjct: 508 NYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHI 567

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-- 589
           L ++ +   E+R  L    PR+E M I  + I  VIG GGK+I+GI E++GA VNI++  
Sbjct: 568 LGKIMEAQPETRDDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVD 627

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G ++I+ ++   I+AA  MI+ I  +PEV + Y G++  VM +G FV F   ++GL+H
Sbjct: 628 GMGVIEISGTNKPCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLH 687

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           IS++  +R     D  +KEG+++ VKLLD D + GK KLS KV+ +  
Sbjct: 688 ISEVDWKRFETIEDTNLKEGESINVKLLDIDPKTGKFKLSRKVLLEKP 735


>gi|86742236|ref|YP_482636.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. CcI3]
 gi|123764534|sp|Q2J735|PNP_FRASC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86569098|gb|ABD12907.1| Polyribonucleotide nucleotidyltransferase [Frankia sp. CcI3]
          Length = 729

 Score =  703 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/704 (40%), Positives = 427/704 (60%), Gaps = 33/704 (4%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
             R ++ ETGR+A+Q+ G+ +A  G+T+VL+     +  K+  DFFPLTV+ +ER YA G
Sbjct: 17  GDRTVRFETGRLAKQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAG 76

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D ++   VV++
Sbjct: 77  RIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAI 136

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG------TQDA 184
            AASA+  LSGLPF GP+   +V +++G+++  P   E  + + D+ V+G      +  A
Sbjct: 137 NAASASTTLSGLPFTGPIGATRVGFVDGEWIAFPTHAELARATFDMVVAGRVIEDGSDVA 196

Query: 185 VLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA               +E+VV   +       + +  A S+LA + AK     
Sbjct: 197 IMMVEAEATPGTVELLAHGAPAPTEEVVAAGLEAAKPAIRELCRAQSELAALAAKPAREF 256

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ ID  D   + + +S  I ++L  +  IP K  R  ++D +++      +S+     E
Sbjct: 257 PVFIDYHD--DVLDALSAAIGDELSAALRIPGKAERENELDRVRQLAAEKVASQFEG-RE 313

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            EI + +  +  K+VR+ ++ + VR+DGR +  +R +SA+V  + R HGS+LF RG+TQ 
Sbjct: 314 KEIGAAYRALTKKLVRSRIVTESVRIDGRSTTEIRALSAEVDYIPRVHGSALFERGETQI 373

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 374 LGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 433

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+ 
Sbjct: 434 LLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIH 493

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
             D ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA+  R
Sbjct: 494 ADDSYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLAAALQQARGAR 553

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           L IL+ M++ +     ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ ++
Sbjct: 554 LAILDVMAEAIGSP-DEMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVE 612

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           DDGT+ I +      E+AR  I +I    +PEV + Y G +VK+ +FGAFV     RDGL
Sbjct: 613 DDGTIYIGAVDGPSAESARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGRDGL 672

Query: 647 VHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +H+S+L T    +RV K  DV+  G  + V++ + D RGKI LS
Sbjct: 673 LHVSKLKTLSGGKRVEKVEDVLTVGQKLQVEITEIDSRGKISLS 716


>gi|189485170|ref|YP_001956111.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|226704829|sp|B1GZG8|PNP_UNCTG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170287129|dbj|BAG13650.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 689

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/690 (44%), Positives = 438/690 (63%), Gaps = 5/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    E++ AG+   +E+G++A+Q+ G+     GETVVL TVV  +  K G DF PLTV
Sbjct: 1   MEYFKKEVDVAGKKFIVESGKVAKQAGGSCTVRIGETVVLVTVVSLKEPKVGIDFMPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ERTYA GKIPGG+ +RE+RP + E+L+SR+IDRSIRPLF + Y+N+TQ+   V+ HD
Sbjct: 61  DYRERTYAAGKIPGGFFKRETRPRDGEVLVSRLIDRSIRPLFPEYYRNDTQISAVVLSHD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
            E+   + +++ AS AL  S LPF  P+   ++  INGQ ++NP + E +   LDL VSG
Sbjct: 121 GENDSEMAAILGASIALYTSDLPFTTPIASVRIGKINGQLIINPLIAEQKLSDLDLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T++A+ MVE  A +LSE  +L+A+       K +      L    AK  IV++    + L
Sbjct: 181 TEEALTMVEAGARELSEAEMLEALNLAGKTLKGICLFQKTL---PAKTKIVVEQPQHNSL 237

Query: 241 -EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
            + ++         +S  I EK  R    D  KK + S    ++       I ++ EDI 
Sbjct: 238 LKADIEAEAVSKAEMSVVIKEKCEREFFWDSFKKDISSRLLEKYPEELPSTIDAILEDIF 297

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +  R ++L+KK+R DGR  E +R I+ + G+L R HGSSLF RG TQA+V VTLG+  D
Sbjct: 298 YQKARDLVLNKKIRTDGRGFEEIRPITCETGVLPRVHGSSLFTRGQTQALVTVTLGSPCD 357

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q +D L    +  FM+HYNF   ATGE  R  A SRREIGHG LA++A+  ++P    F
Sbjct: 358 MQVIDELIVEYKERFMLHYNFPGFATGEPKRDRAVSRREIGHGNLAKKALKHIMPDGEDF 417

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            Y +RIVS+I ES+GSSSMA+VCG SLAL +AGVP+    AG++MGL+K+G  ++IL+DI
Sbjct: 418 GYAVRIVSDILESNGSSSMASVCGGSLALFNAGVPVKSSCAGVSMGLMKEGGSYVILTDI 477

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G EDHLG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QAKRGR  IL++M  V+
Sbjct: 478 TGMEDHLGDMDFKVAGTRKGITALQMDIKILGLTTEIVAQALEQAKRGRFFILDQMDAVV 537

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S  +  L  + PR+  + IP ++I  +IG GGK IR I E    K++I++ G V I+   
Sbjct: 538 SAPKNDLSNYAPRMITLTIPQNKIGELIGPGGKNIRKIQEDNNVKIDIEETGRVFISGVE 597

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              +++A+E +  +T   EV KIYK +V K+M FGAF      ++GL+HISQLS     +
Sbjct: 598 SDGVKSAKEYVECLTVEAEVGKIYKSRVTKIMAFGAFAEILPGKEGLIHISQLSNRHTKR 657

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             DVVKEGD V VK+++ D +G+I LS+K 
Sbjct: 658 VEDVVKEGDEVKVKVIEIDKQGRINLSIKA 687


>gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           LPCoLN]
          Length = 694

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/695 (43%), Positives = 433/695 (62%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +  T+ I    G+ L  ETG+IARQ++GAVL   GET V A+      L D  DF PL 
Sbjct: 1   MNFQTISINLTEGKILVFETGKIARQANGAVLVRSGETCVFASACAV-DLDDKVDFLPLR 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  + GK  GG+++RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +
Sbjct: 60  VDYQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +  P  +++ AASAAL +S +P    V G ++  I+ Q+V+NP   E   S LDL ++
Sbjct: 120 DGQVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT++A+LM+E   +  +E+ VLDAI FGH     + + +    +   K   +       +
Sbjct: 180 GTENAILMIEGHCDFFTEEQVLDAIEFGHKHIVTICKRLQLWQEEIGKSKNLSAVYPLPT 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
           ++   + +  ++       I +K V      ++++ ++     E    ++   I +  + 
Sbjct: 240 EVLTAVKECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFNIKAACKT 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++  +R ++ D+++R DGR   TVR I+ +   L RTHGS LF RG+TQ + V TLG+ 
Sbjct: 300 LKSDTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSE 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
              Q  + L+G   + F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP +A
Sbjct: 360 AMAQRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSA 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+RI S ITES+GSSSMA+VCG  LALMDAGVPIS P+AGIAMGL+ D    IILS
Sbjct: 420 TFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DISG EDHLG MDFK+AG+  GITA QMD+K+ GI+  IM  AL QAK+G   ILN M++
Sbjct: 480 DISGLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS  +  L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++I+D G V I++
Sbjct: 540 ALSAPKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDINDLGVVSISA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS + I  A+E+I  +    EV K Y+G+V  V+ FGAFV     ++GL HIS+ S +R+
Sbjct: 600 SSASAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCHISEFSRQRI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
              SDVVKEGD + VKLL  +++G++KLS K   +
Sbjct: 660 ENISDVVKEGDIIDVKLLSINEKGQLKLSHKATLE 694


>gi|32490971|ref|NP_871225.1| polynucleotide phosphorylase/polyadenylase [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|81741772|sp|Q8D2Y0|PNP_WIGBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25166177|dbj|BAC24368.1| pnp [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 705

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/689 (45%), Positives = 471/689 (68%), Gaps = 4/689 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M      + ++    + +ETG IARQ+  AV+    +T V  TVV D+  K GQ FFPLT
Sbjct: 1   MLKATIQKFQYGKNIVTIETGMIARQATSAVMVRMDDTSVFVTVVADKKEKLGQKFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTY++G+ PGG+ RRE RP ENE+L+SR+IDRS+RPLF K + N+ Q+I  VM  
Sbjct: 61  VNYQERTYSIGRFPGGFFRREGRPNENEVLVSRLIDRSVRPLFPKNFFNDIQIIATVMSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +VS++ ASAAL LSGLPF+ P+  +++ YI+ +Y+LNP   E     LD+ VS
Sbjct: 121 NPQVNPDIVSIIGASAALSLSGLPFKCPIGSSRIGYIDNKYILNPTTSELIDSKLDMIVS 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DF 237
           G+ +AVLMVE  +N L E  +L+AI+FG+ + K VIE I KL K   KE +  D K  + 
Sbjct: 181 GSSNAVLMVESSSNILQEKNILEAILFGNEQNKIVIENIDKLKKKFKKENLEYDLKSLNN 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + ++  +  +  + ++ S  IPEK  R ++I+++K  +++ F + +++  E  +  + ++
Sbjct: 241 NDIQFVIEDLFFDRIKDSYKIPEKKKRLEKIENIKNDILNNFINNNNTNEEEIL-YIIQN 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+ K+VR  ++  K R+DGR  + VR++   +G+L RTHGSSLF RG+TQA+V  TLGT 
Sbjct: 300 IERKIVRNRIISGKPRIDGRTEDMVRNLDIHLGILPRTHGSSLFTRGETQALVTTTLGTE 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L G + + F+ HYNF P   GEV  + +P RREIGHG+LA+R +  V+P   
Sbjct: 360 RDAQNIDDLVGDKIDRFLFHYNFPPYCVGEVGIISSPKRREIGHGKLAKRGMLAVMPDID 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+RIVSEITES+GSSSMA+VCG+SL+LMDAGVPIS  VAGIAMGL+K+ D F++L+
Sbjct: 420 KFPYTIRIVSEITESNGSSSMASVCGASLSLMDAGVPISSSVAGIAMGLIKEKDKFVVLT 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDED+LG MDFKV GT  G+TA+QMD+KI GI+  I+ ++L +AK  R++ILNEM K
Sbjct: 480 DILGDEDYLGDMDFKVMGTREGVTALQMDIKIEGITSEILQVSLDKAKNARINILNEMDK 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+ + + ++  F PR+  + I P++I++VIG GG VIR + E+T + + I+DDGTVK+ S
Sbjct: 540 VIKKPKNEISIFAPRIYKIKINPEKIKDVIGKGGSVIRMLTEKTKSSIEIEDDGTVKVIS 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           + +   + A + I+ IT   ++NKIY  ++ ++ +FG F      ++GL+H+S++  ++ 
Sbjct: 600 TDIKNAQCALKKIKDITHEIKINKIYVAKITRISEFGIFACLINNKEGLIHVSKIPYKKF 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           +  ++  K G  + VK+++ D  G+I+LS
Sbjct: 660 SDINNNFKIGQIISVKVIEIDRYGRIRLS 688


>gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
 gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
          Length = 802

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/703 (47%), Positives = 467/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVG+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAVGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPAGFCDEVVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDED-QGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI   G+Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFSTPIAGAKIGYIREEGRYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD 236
            SGT+ +V+MVE EA++LSED +L A+ FGH  C  V++ I + A+    K+       D
Sbjct: 180 YSGTKSSVVMVESEASELSEDEMLGALTFGHENCTQVLDLIEEFAEAAGPKDVAEFIPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----SSWNEGEIV 292
             K+   +         V+     K  R  Q+D  ++ + S    +H      + E E++
Sbjct: 240 IGKVVSGIGGDHSTRFSVAYGDNNKKTRVLQLDAARESLYSDLCEKHVSDGGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR+ +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRSRVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQA+ GRL I+
Sbjct: 480 YAVLSDIIGDEDHLGDMDFKVAGTKEGITALQMDMKIRGIGFDIIEKSLQQARDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++  D +  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGID-KDHVQLSMRRVDQDSG 701


>gi|282878811|ref|ZP_06287578.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
           35310]
 gi|281299019|gb|EFA91421.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
           35310]
          Length = 778

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/715 (39%), Positives = 427/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +P++NEIL SR++DR++RPLF   Y  E  V I ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVYVQIMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++ +AASAA+  S +PF+  +   +V  ING+YV+NP  ++  Q  +DL V 
Sbjct: 121 DGVDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVINPTFEQMKQADMDLMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E  ++SE  +++A+   H   KP+     +L K   K+  V    D   
Sbjct: 181 ATKDNIMMVEGEMKEVSELDLINALKAAHEAIKPMCAVQDELNKELGKD--VKREYDHEV 238

Query: 240 LEEEMSQMIKEDLRVSCFIPE-----KYVRCKQIDDLKKKMVSYFSSEHSS--------W 286
            +E++ + +  +L    +        K  R    D +    +  + + H++         
Sbjct: 239 NDEDLREKMNNELYQPVYDITKQALPKQERHDAFDKVLADFLEEYDAAHAADLTEEELEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
              E    ++D+    +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHAEATRYYDDVLKNAMRRCVLDEGKRLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+ DE+ VD +       F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 QSLSTCTLGTKLDEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   LP    FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RGLKGQLP--DDFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   D + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEDKYAVLSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALLQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HILN+M + ++E R ++    PR+E   IP + I  VIG GGK+I+ + E TGA 
Sbjct: 537 KAGREHILNKMLETIAEPRPEMKPQVPRIEAFEIPKEFIGAVIGPGGKIIQQMQEDTGAT 596

Query: 585 VNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + ID+    G +++++ +   I+AA   I+SI  +PEV +IY+G V  +M +G FV    
Sbjct: 597 ITIDEVDNVGKIQVSAPNKESIDAAIAKIKSIVAIPEVGEIYEGTVRSIMPYGCFVEILP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    D  + EGD + VKLL+ D + GK KLS +V+ +  
Sbjct: 657 GKDGLLHISEIDWKRLETVEDAGIHEGDKIRVKLLEIDPKTGKYKLSRRVLLEKP 711


>gi|331002061|ref|ZP_08325581.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330411857|gb|EGG91262.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 700

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/700 (40%), Positives = 424/700 (60%), Gaps = 16/700 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +  +E AGR L+++ GR+A Q++GA L  YGET VL+T       ++G DFFPL+V 
Sbjct: 4   EFKSYSMELAGRTLRVDIGRVAAQANGAALMHYGETTVLSTATASDKPREGIDFFPLSVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGK+PGGY +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  D 
Sbjct: 64  YEEKMYAVGKMPGGYNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDP 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ ++ A  +S +PF+GP    Q+  + G +V+NP  ++     L L V+ T
Sbjct: 124 DCSPELTAMLGSAIATAISDIPFDGPCATTQIGMVGGFFVVNPNEEQMAVSDLKLTVAST 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +D V+M+E  AN++ ++ +++AI    +  K +IE I K+     KE     +       
Sbjct: 184 RDKVIMIEAGANEIPDEKMIEAIYKADSVNKEIIEFIDKIVAEVGKEKHAYTAFSIP--- 240

Query: 242 EEMSQMIKE-----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           EE++  IKE     ++ V+ F  EK VR + I  + +++   F+ +    +   +     
Sbjct: 241 EELTAAIKEIVPPQEMEVAVFTDEKQVREENIKAITQRLEEAFADKEEWLS--LLGEAIY 298

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
             Q K VR ++L  + R DGR    +R ++A+  ++ R HGS++F RG TQ   +VTL  
Sbjct: 299 QYQKKTVRKMILKDQKRPDGRAMNQIRTLAAETDIIPRVHGSAMFTRGQTQICNIVTLAP 358

Query: 357 REDEQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             + Q +D L+       ++  YNF   + GE      P RREIGHG LA RA+ PVLP 
Sbjct: 359 LSEAQKIDGLNLLETTKRYIHQYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPT 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
             +FPY +R VSE  ES+GS+SMA+ C S +ALM AGVPI + VAGI+ GLV     DD+
Sbjct: 419 PEEFPYAIRSVSETFESNGSTSMASTCSSCMALMAAGVPIKRMVAGISCGLVTGDSDDDY 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G ED  G MDFKV GTD GITA+QMD+KI G++++I+  A+ +    R  ILN
Sbjct: 479 VLLTDIQGLEDFFGDMDFKVTGTDMGITAIQMDIKIHGLTQDIVKGAIAKCHEARDFILN 538

Query: 534 E-MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M   +SE R ++ ++ P++  + I P +I +V+G  GK I  I+E TG K++I ++G 
Sbjct: 539 TCMRPCISEPRKEISKYAPKIAQIQINPSKIGDVVGKQGKTINKIIEDTGVKIDISEEGL 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V +A +  A I+ A ++IR IT   E   I +G VV++++FGAFV     +DG+VHIS+L
Sbjct: 599 VSVAGTDQAMIDKAIDIIRGITIEIEAGMIMRGTVVRMLEFGAFVELAPGKDGMVHISKL 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           S +RV K  DVVK G+ V VK++  D  +G+I LSMK  D
Sbjct: 659 SDKRVEKVEDVVKVGNEVTVKVIKVDPMKGRIDLSMKTSD 698


>gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae CWL029]
 gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae J138]
 gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae AR39]
 gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae
           CWL029]
 gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           AR39]
 gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           J138]
          Length = 694

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/695 (42%), Positives = 433/695 (62%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +  T+ I    G+ L  ETG+IARQ++GAVL   GET V A+      L D  DF PL 
Sbjct: 1   MNFQTISINLTEGKILVFETGKIARQANGAVLVRSGETCVFASACAV-DLDDKVDFLPLR 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  + GK  GG+++RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +
Sbjct: 60  VDYQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +  P  +++ AASAAL +S +P    V G ++  I+ Q+V+NP   E   S LDL ++
Sbjct: 120 DGQVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT++A+LM+E   +  +E+ VLDAI FGH     + + +    +   K   +       +
Sbjct: 180 GTENAILMIEGHCDFFTEEQVLDAIEFGHKHIVTICKRLQLWQEEVGKSKNLSAVYPLPA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
           ++   + +  ++       I +K V      ++++ ++     E    ++   I +  + 
Sbjct: 240 EVLTAVKECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFNIKAACKT 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++  +R ++ D+++R DGR   TVR I+ +   L RTHGS LF RG+TQ + V TLG+ 
Sbjct: 300 LKSDTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSE 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
              Q  + L+G   + F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP +A
Sbjct: 360 AMAQRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSA 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+RI S ITES+GSSSMA+VCG  LALMDAGVPIS P+AGIAMGL+ D    IILS
Sbjct: 420 TFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DISG EDHLG MDFK+AG+  GITA QMD+K+ GI+  IM  AL QAK+G   ILN M++
Sbjct: 480 DISGLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS  +  L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++++D G V I++
Sbjct: 540 ALSAPKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDVNDLGVVSISA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS + I  A+E+I  +    EV K Y+G+V  V+ FGAFV     ++GL HIS+ S +R+
Sbjct: 600 SSASAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCHISECSRQRI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
              SDVVKEGD + VKLL  +++G++KLS K   +
Sbjct: 660 ENISDVVKEGDIIDVKLLSINEKGQLKLSHKATLE 694


>gi|111225112|ref|YP_715906.1| polynucleotide phosphorylase/polyadenylase [Frankia alni ACN14a]
 gi|123142666|sp|Q0RDT1|PNP_FRAAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|111152644|emb|CAJ64385.1| polynucleotide phosphorylase, has polyadenylase activity [Frankia
           alni ACN14a]
          Length = 729

 Score =  700 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/705 (40%), Positives = 426/705 (60%), Gaps = 34/705 (4%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
             R ++ ETGR+ARQ+ G+ +A  G+T+VL+     +  K+  DFFPLTV+ +ER YA G
Sbjct: 17  GNRTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAG 76

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D ++   VV++
Sbjct: 77  RIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYDVVAI 136

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG------TQDA 184
            AASA+  LSGLPF GP+   +V Y++G+++  P   E  + + D+ V+G      +  A
Sbjct: 137 NAASASTTLSGLPFTGPIGATRVGYVDGEWIAFPTHAELARATFDMVVAGRVVEDGSDVA 196

Query: 185 VLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA               +E+VV   +       + +  A S+LA +  K     
Sbjct: 197 IMMVEAEATPGTVELIAGGAPAPTEEVVAAGLEAAKPAIRELCRAQSELASLAGKAATRE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ ID  D   + E +S  + ++L  +  I  K  R  ++D +++      +++     
Sbjct: 257 FPVFIDHHD--DVLEALSAAVGDELSAALRIAGKSERENELDRVRQLAAEKVAAQFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  K+VR+ ++ + VR+DGR +  +R++SA+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEIGAAYRALTKKLVRSRIVTEGVRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV
Sbjct: 434 ALLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLV 493

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
              D ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA+  
Sbjct: 494 HADDAYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLASALQQARGA 553

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RL IL+ M++ +     ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ +
Sbjct: 554 RLAILDVMAEAIGSP-DEMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITV 612

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +DDGT+ I ++     E AR  I +I    +PEV + Y G +VK+ +FGAFV     RDG
Sbjct: 613 EDDGTIYIGAADGTSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGRDG 672

Query: 646 LVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+H+S+L T    +RV K  DV+  G  + V++ + D RGKI LS
Sbjct: 673 LLHVSKLKTLSGGKRVEKVEDVLTVGQKLQVEITEIDARGKISLS 717


>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 922

 Score =  700 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/755 (37%), Positives = 446/755 (59%), Gaps = 60/755 (7%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+
Sbjct: 86  NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVH 145

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +D 
Sbjct: 146 YQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDG 205

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++GT
Sbjct: 206 LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGT 265

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             A+L +E  +N L E+++L+A+  G +  +    AI  LAK   K  ++   +    +L
Sbjct: 266 DTAILTIEGYSNFLPEEMLLEAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRLPPPEL 325

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------------- 285
            + + ++  E+L  +  I  K  R K I  L++K+++  + +                  
Sbjct: 326 YKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPDL 385

Query: 286 ----------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKK 311
                                             ++E ++  VF+++ +K++R  +++  
Sbjct: 386 LEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEGG 445

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G+  
Sbjct: 446 KRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDE 505

Query: 372 -NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S + 
Sbjct: 506 YKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVI 565

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDED 484
           ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G ED
Sbjct: 566 ESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAED 625

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K      L
Sbjct: 626 ASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPTL 685

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEI 603
            L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +A +
Sbjct: 686 SLSKYAPLIHIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDVASL 745

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E A+ +I  +T VP V  IY+   +K +  +GAFV     R+GL HIS+LS E +AK  D
Sbjct: 746 ERAKAIISGLTMVPAVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPED 805

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             K GD + VKL++ +++G+++LS++ +   +   
Sbjct: 806 AYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETD 840


>gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9211]
 gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 722

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/704 (40%), Positives = 422/704 (59%), Gaps = 18/704 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            T  + + GR ++L TGR A Q+ G+VL   G+T VL T       ++G DF PL  +Y+
Sbjct: 4   QTTTVSFDGREIRLTTGRYAPQAGGSVLIECGDTAVLVTATQSP-GREGADFLPLICDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG ++RRE RP E   LISR+IDR +RPLF    +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGSFMRREGRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
              V+++ A+S A +L+ +PF GP+   +V  +   +VLNP   E ++G LDL V+GT D
Sbjct: 123 PSDVLAVTASSMATLLAEIPFYGPMAAVRVGLLGDDFVLNPSFREIERGDLDLVVAGTPD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEP--IVIDSKDFS 238
            V+M+E  ANQLSE  V++A+ FG+     +I+A   + K      K+P    ID    +
Sbjct: 183 GVVMIEAGANQLSEQDVIEAVDFGYEAVTELIKAQQSILKESGIDHKKPDEQEIDETLPN 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY---FSSEHS-----SWNEGE 290
            L++   + I E L+   F   K  R  +++++K  +         +++     S N   
Sbjct: 243 YLDKNGRKPIGELLKK--FELTKKERDLKLEEIKTNLGEKIDSLKEDNAVKKAISSNPKL 300

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAI 349
           + + F+ +  K++R  ++    R+DGR  + VR I A  G+L  R HGS LF RG TQ +
Sbjct: 301 LTTSFKSLTKKLMREQIIKDGKRVDGRALDEVRKIEAAAGILPKRVHGSGLFQRGLTQVL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
              TLGT  D Q +D L+ +    ++ HYNF P + GE   M  P RRE+GHG LA RA+
Sbjct: 361 STATLGTPSDAQEMDDLNPSSDKTYIHHYNFPPYSVGETRPMRTPGRREVGHGALAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP    FPY LR+VSE+  S+GS+SM +VCGS++AL+DAGVP+  PV+G AMGL+K+
Sbjct: 421 IPVLPPKESFPYVLRVVSEVLSSNGSTSMGSVCGSTIALLDAGVPLKAPVSGAAMGLIKE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G +  IL+DI G ED LG MDFKVAGT+ GITA+QMDMK+ G+    +  A+ QAK  R 
Sbjct: 481 GKEIRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKVTGLEVKTIADAINQAKPART 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL +M++ + + R  L    PR+    I P+ I  VIG GG+ I+GI E+T  K++I+D
Sbjct: 541 HILEKMNETIDKPRETLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 600

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IAS      E A+++I  +T      +I+ G + +++  GAFV     ++G++HI
Sbjct: 601 GGIVTIASHDGVAAEEAQKIIEGLTRKVHEGEIFTGSITRIIPIGAFVEILPGKEGMIHI 660

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           SQLS  RV K  DVVK GD V V++ + D+RG+I L+++ V QN
Sbjct: 661 SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVSQN 704


>gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae TW-183]
 gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           TW-183]
          Length = 694

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/695 (42%), Positives = 433/695 (62%), Gaps = 5/695 (0%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +  T+ I    G+ L  ETG+IARQ++GAVL   GET V A+      L D  DF PL 
Sbjct: 1   MNFQTISINLTEGKILVFETGKIARQANGAVLVRSGETCVFASACAV-DLDDKVDFLPLR 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  + GK  GG+++RE RP+E EIL+SR+IDRS+RP F      + QV+  V  +
Sbjct: 60  VDYQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D +  P  +++ AASAAL +S +P    V G ++  I+ Q+V+NP   E   S LDL ++
Sbjct: 120 DGQVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFS 238
           GT++A+LM+E   +  +E+ VLDAI FGH     + + +    +   K   +       +
Sbjct: 180 GTENAILMIEGHCDFFTEEQVLDAIEFGHKHIVTICKRLQLWQEEIGKSKNLSAVYPLPA 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFED 297
           ++   + +  ++       I +K V      ++++ ++     E    ++   I +  + 
Sbjct: 240 EVLTAVKECAQDKFTELFNIKDKKVHAATAHEIEENILEKLQREDDDLFSSFNIKAACKT 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++  +R ++ D+++R DGR   TVR I+ +   L RTHGS LF RG+TQ + V TLG+ 
Sbjct: 300 LKSDTMRALIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSE 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
              Q  + L+G   + F + Y F P + GEV R+G+P RREIGHG+LA +A+   LP +A
Sbjct: 360 AMAQRYEDLNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSA 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+RI S ITES+GSSSMA+VCG  LALMDAGVPIS P+AGIAMGL+ D    IILS
Sbjct: 420 TFPYTIRIESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DISG EDHLG MDFK+AG+  GITA QMD+K+ GI+  IM  AL QAK+G   ILN M++
Sbjct: 480 DISGLEDHLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            LS  +  L ++ PR+E M I P +I +VIG GGK IR I+E+TG +++++D G V I++
Sbjct: 540 ALSAPKADLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQIDVNDLGVVSISA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           SS + I  A+E+I  +    EV K Y+G+V  V+ FGAFV     ++GL HIS+ S +R+
Sbjct: 600 SSASAINKAKEIIEGLVGEVEVGKTYRGRVTSVVAFGAFVEVLPGKEGLCHISECSRQRI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
              SDVVKEGD + VKLL  +++G++KLS K   +
Sbjct: 660 ENISDVVKEGDIIDVKLLSINEKGQLKLSHKATLE 694


>gi|255531752|ref|YP_003092124.1| polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
           2366]
 gi|255344736|gb|ACU04062.1| Polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
           2366]
          Length = 716

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/706 (41%), Positives = 439/706 (62%), Gaps = 10/706 (1%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V     +   GR +++ETG++A+Q+DGAV+   G+T++LATVV     K G DF PL+
Sbjct: 1   MNVIKKSFDLGDGRTIEIETGKLAKQADGAVVVKMGDTMLLATVVSTVGAKAGVDFLPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+LRRE+R ++ E+LISR++DR++RP+F + Y ++TQV+I+++  
Sbjct: 61  VDYQEKYAAAGRIPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMISLISS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++ +AASAA+ +S +PF GP+   +V  I+G++V+NP + + +   ++  V+
Sbjct: 121 DKNIMPDCLAGLAASAAIAVSDIPFNGPISEVRVARIDGKFVINPYVTDLERADIEFLVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-PIVIDSKD-F 237
           GT+  ++MVE E N++SE  +++AI F H      ++A  +LA++  K        +D  
Sbjct: 181 GTEKDIVMVEGECNEISETEMVEAIEFAHKAIVIQVQAQKELAELVGKTVKREYSHEDSN 240

Query: 238 SKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            +L+E++     + +   +     K  R      +    ++    E            F 
Sbjct: 241 PELKEQVYAATYDKVYAIAKSNTSKGERGDAFGQVLMDFIATLGEEIDDVTGFLAKKYFH 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           D+Q   +R ++LD+ +R+DGRD  TVR I ++VG L   HGS++F RG+TQ++  VTLG+
Sbjct: 301 DVQYDAIRNLVLDEGIRLDGRDVRTVRPIWSEVGYLPAAHGSAVFTRGETQSLTTVTLGS 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           ++DEQ +D       N F++HYNF   +TGEV       RREIGHG LA R++  VLP  
Sbjct: 361 KDDEQMIDGAFINGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAMRSLKKVLPGL 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFI 474
            + PYT+RIVS+I ES+GSSSMATVC  +LALMDAGV I  PV+GIAMGL+ D     + 
Sbjct: 421 EENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGVKIKAPVSGIAMGLITDEKSGKYA 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT+ GI A QMD+KI G+   ++  AL QAK  RLHILNE
Sbjct: 481 ILSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTNALNQAKEARLHILNE 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DG 591
           M K ++  R       PR+  ++I  + I  VIG GGK+I+ +  +TGA ++I++    G
Sbjct: 541 MKKTIAAPREDYKAHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVGNKG 600

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V+I + + A I+AA   I +I   PE+   Y+G+V  +M FGAFV     +DGL+HIS+
Sbjct: 601 IVEIFADNKAAIDAAVGRINAIAAKPEIGATYQGKVKSIMPFGAFVEIMPGKDGLLHISE 660

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +   R+     V KEGD V VKLLD D +GK+KLS K +     KP
Sbjct: 661 IDWTRLETMDGVFKEGDKVEVKLLDVDKQGKMKLSRKALLPRPPKP 706


>gi|229829166|ref|ZP_04455235.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
           14600]
 gi|229792329|gb|EEP28443.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
           14600]
          Length = 710

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/695 (38%), Positives = 415/695 (59%), Gaps = 9/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T  +E AGR L++E G++A+Q++GAV+  YGET +L T       ++G DFFPL+V +
Sbjct: 15  MKTFRMELAGRELQIEVGKVAKQANGAVMIRYGETTLLCTATASEKPREGIDFFPLSVEF 74

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ Y+VGK PGG+ +RE + +EN +L +R+IDR +RPLF K Y+N+  +   V+  D  
Sbjct: 75  EEKYYSVGKFPGGFNKREGKASENSVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPS 134

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
             P +V+M+  + A  +S +PF+GP    QV  ING  ++NP   + D G L L V+ T+
Sbjct: 135 CRPELVAMIGTAMATAISDIPFDGPCAMTQVGMINGDLLINPSQSDWDNGDLRLTVASTR 194

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
           D V+M+E  AN+LS+  +++AI   H+  + +I  I ++     K     +      ++ 
Sbjct: 195 DKVIMIEAGANELSDQEMIEAIYKAHDVNQTIIALIDQMVAEVGKAKHDYEHVAIDRQMF 254

Query: 242 EEMSQMIK-EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           EEM +++  + +  + F  EK VR + I  + +++   F+          + S     Q 
Sbjct: 255 EEMKKIVTPKQMEEAVFSDEKQVREENIRRVTERLAEAFADREDYL--AVLDSAVYQYQK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K VR ++L    R DGR  + +R +SA+V L+ R HGS++F RG TQ   +VTL    + 
Sbjct: 313 KTVRKMILKDHRRPDGRALDQIRPLSAEVDLIPRVHGSAMFTRGQTQICNIVTLAPLSEV 372

Query: 361 QYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q V+ L        ++  YNF   + GE      P RREIGHG LA RA+ PVLP    F
Sbjct: 373 QRVEGLDANVTNKRYIHQYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPTVEDF 432

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILS 477
           PY +R VSE  ES+GS+SMA+ C S ++LM AGVPI K VAGI+ GLV  +D DD+++L+
Sbjct: 433 PYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKKMVAGISCGLVTGEDDDDYVLLT 492

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MS 536
           DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++    RL I++  MS
Sbjct: 493 DIQGLEDFFGDMDFKVTGTKDGITAIQMDIKIHGLTRTIVEEAIRRTHEARLFIMDNCMS 552

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           K +   R +L ++ P++  + I P +I +V+G  GK I  I+++TGAK++ID+ G V ++
Sbjct: 553 KAIDRPRAELSKYAPKIVQIQIDPSKIGDVVGQRGKTINEIIDRTGAKIDIDESGAVSVS 612

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +   A I+ A  ++  IT   E  +   G+VV + +FGAF+ F   ++G+VHIS+++ +R
Sbjct: 613 AMDQAAIDEAVRLVEIITMDFEKGQHLTGKVVSIKEFGAFIEFAPGKEGMVHISRIANQR 672

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           + +  DV+  GD V V  +  D  G++  SMK  D
Sbjct: 673 IDRVEDVLTLGDIVEVVCMGKDKMGRMSFSMKSSD 707


>gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis W83]
 gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           W83]
          Length = 743

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/708 (39%), Positives = 435/708 (61%), Gaps = 18/708 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +V +  I+   GR +K+ETG++A+Q+DGAV  T G TV+LATV   +    G DF PL
Sbjct: 1   MLNVVSKTIDLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A+G+ PGG+ RRE + ++ EIL  R++DR++RPLF   Y  E  V + +  
Sbjct: 61  QVEYKEKYSAIGRFPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V  ++G+Y++NP  ++ +   +DL V
Sbjct: 121 ADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T D ++MVE E +++ E  +L+ I   H   K   +A  +L++   K  +        
Sbjct: 181 GATMDNIMMVEGEMDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGK--LQKREYSHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             +E++ + + ++     +        K+ R +  + + ++  + ++ E  +     I  
Sbjct: 239 VNDEDLRKKVHDECYARAYEVATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIAR 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VT
Sbjct: 299 YYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++
Sbjct: 359 LGTKSDEKLVDDVLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMI 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGV I KPV+GIAMGL+ +  G 
Sbjct: 419 PT--DYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGK 476

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QAK+GRLHI
Sbjct: 477 NYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHI 536

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-- 589
           L ++ +   E+R  L    PR+E M I  + I  VIG GGK+I+GI E++GA VNI++  
Sbjct: 537 LGKIMEAQPETRDDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVD 596

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G ++I+ ++   I+AA  MI+ I  +PEV + Y G++  VM +G FV F   ++GL+H
Sbjct: 597 GMGVIEISGTNKPCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLH 656

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           IS++  +R     D  +KEG+++ VKLLD D + GK KLS KV+ +  
Sbjct: 657 ISEVDWKRFETIEDTNLKEGESINVKLLDIDPKTGKFKLSRKVLLEKP 704


>gi|315502540|ref|YP_004081427.1| guanosine pentaphosphate synthetase i/polyribonucleotide
           nucleotidyltransferase [Micromonospora sp. L5]
 gi|315409159|gb|ADU07276.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora sp. L5]
          Length = 789

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/704 (40%), Positives = 423/704 (60%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  ++  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   +V +++GQ+V  P L+E  + + D+ V+G      + A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARATFDMVVAGRTLADGEVA 199

Query: 185 VLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA               +E++V   +       + +  A S+LA++ AK     
Sbjct: 200 IMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSELAEVAAKPVSEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D +D   + + ++ + + D+  +  I  K  R + +D +K K+    +       E
Sbjct: 260 PVFLDYQD--DVYDAVADVARADVTEALKIAGKADREEALDRIKAKVAEELTGRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R +SA+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ VD+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQMVDTLSPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL+ M + +     ++ ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 HEARQTILDVMQRAIEAP-AEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA + I  I +  +P+V + + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVDRINGIANPTLPKVGERFLGTVVKTAAFGAFISLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDARGKIYL 719



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 88/255 (34%), Gaps = 26/255 (10%)

Query: 314 MDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           +D     T R+I+   G L R   GS +   G+T  +   T G +  E +          
Sbjct: 15  IDNGSFGT-REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVE 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           + M     +P +     R G PS   I   RL  R + P   +  +    +++V  +   
Sbjct: 74  ERMYAAGRIPGSF--FRREGRPSEDAILTCRLIDRPLRPSFVKGLRNE--VQVVETVLAL 129

Query: 433 DG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           D      +  +  +S++   +G+P S P+    +  V     ++    +         M 
Sbjct: 130 DPQHPYDVVAINAASMSTKLSGLPFSGPIGATRVAHV--DGQWVAFPTLEELARATFDMV 187

Query: 491 FKVAGTDSG---ITAMQMDMKIGGI----------SENIMV---MALQQAKRGRLHILNE 534
                   G   I  ++ +     +          +E I+     A + A R      +E
Sbjct: 188 VAGRTLADGEVAIMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSE 247

Query: 535 MSKVLSESRLQLGEF 549
           +++V ++   +   F
Sbjct: 248 LAEVAAKPVSEFPVF 262


>gi|302865980|ref|YP_003834617.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora aurantiaca ATCC
           27029]
 gi|302568839|gb|ADL45041.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora aurantiaca ATCC
           27029]
          Length = 796

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/704 (40%), Positives = 423/704 (60%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  ++  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   +V +++GQ+V  P L+E  + + D+ V+G      + A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARATFDMVVAGRTLADGEVA 199

Query: 185 VLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA               +E++V   +       + +  A S+LA++ AK     
Sbjct: 200 IMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSELAEVAAKPVSEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D +D   + + ++ + + D+  +  I  K  R + +D +K K+    +       E
Sbjct: 260 PVFLDYQD--DVYDAVADVARADVTEALKIAGKADREEALDRIKAKVAEELTGRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R +SA+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ VD+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQMVDTLSPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL+ M + +     ++ ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 HEARQTILDVMQRAIEAP-AEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA + I  I +  +P+V + + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVDRINGIANPTLPKVGERFLGTVVKTAAFGAFISLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDARGKIYL 719



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 88/255 (34%), Gaps = 26/255 (10%)

Query: 314 MDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           +D     T R+I+   G L R   GS +   G+T  +   T G +  E +          
Sbjct: 15  IDNGSFGT-REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVE 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           + M     +P +     R G PS   I   RL  R + P   +  +    +++V  +   
Sbjct: 74  ERMYAAGRIPGSF--FRREGRPSEDAILTCRLIDRPLRPSFVKGLRNE--VQVVETVLAL 129

Query: 433 DG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           D      +  +  +S++   +G+P S P+    +  V     ++    +         M 
Sbjct: 130 DPQHPYDVVAINAASMSTKLSGLPFSGPIGATRVAHV--DGQWVAFPTLEELARATFDMV 187

Query: 491 FKVAGTDSG---ITAMQMDMKIGGI----------SENIMV---MALQQAKRGRLHILNE 534
                   G   I  ++ +     +          +E I+     A + A R      +E
Sbjct: 188 VAGRTLADGEVAIMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCRAQSE 247

Query: 535 MSKVLSESRLQLGEF 549
           +++V ++   +   F
Sbjct: 248 LAEVAAKPVSEFPVF 262


>gi|330997766|ref|ZP_08321601.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569654|gb|EGG51419.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 742

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/715 (39%), Positives = 429/715 (60%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V    +E   GR + +ETG++A+Q+DGAV+ T G T++LATV   +    G DF PL 
Sbjct: 1   MNVIKKTVELPDGRTISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V + +   
Sbjct: 61  VEYREKFAAAGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P  ++  AASAAL +S +PFEGP+   +V  ING+YV+NP   + +Q  +D+ V 
Sbjct: 121 DGVDMPDALAGFAASAALAVSDIPFEGPISEVRVARINGEYVVNPTFAQLEQADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ ++MVE E  +++E  +L+A+   H   KP+     +L K   KE  V        
Sbjct: 181 ATEENIMMVEGEMKEVTEQDLLNALKVAHEAIKPMCRLQKELEKEAGKE--VKREYCHEV 238

Query: 240 LEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKK-------KMVSYFSSEHSSW 286
            +E++ + +K+    + +        +K+ R     ++++       +  +  S +  + 
Sbjct: 239 NDEDLREEVKKACYDAAYRIAQEGNRDKHAREDAFMEIRENFKLSYAEAHADLSEDELAE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
               I   + D++   +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T
Sbjct: 299 KNTLIDRYYHDVERDAMRRCVLDEGKRLDGRATTEIRPIWCEVSPLPGPHGSAIFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 QSLSTCTLGTKLDEKIIDEVLEQSKMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   +P    FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RGLKGQIP--EDFPYTVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   + + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEEKYAVLSDILGDEDHLGDMDFKTTGTIDGLTATQMDIKCDGLSYEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HIL ++++ +   R +L    PR+  + IP + I  VIG GGK+I+GI E TG+ 
Sbjct: 537 KAGREHILGKLTECMPAPRPELKPHVPRIVQITIPKEFIGAVIGPGGKIIQGIQEDTGSV 596

Query: 585 VNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + I++    G V+++ ++   I+AA   I+SI  VPEV ++Y G +  VM +GAFV F  
Sbjct: 597 ITIEETDGVGVVQVSGANKDVIDAALGKIKSIVAVPEVGEVYDGVIRSVMPYGAFVEFMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            RDGL+HIS++  +R+    +  +KEGD + VKL+D D + GK KLS +V+ +  
Sbjct: 657 GRDGLLHISEIDWKRLETVEEAGLKEGDHIQVKLVDIDQKTGKFKLSRRVLLEKP 711


>gi|300868336|ref|ZP_07112962.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
           6506]
 gi|300333629|emb|CBN58148.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
           6506]
          Length = 714

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/697 (41%), Positives = 419/697 (60%), Gaps = 20/697 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            I + GR ++L+ G +A Q+ GAVL   G+T VL T       ++G DF PL V+Y+ER 
Sbjct: 7   SISFDGRDIRLKIGLLAPQAGGAVLIQSGDTSVLVTATRA-QGREGIDFLPLLVDYEERL 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIPGG+LRRE RP E   L  R+IDR +RPLF    +++ QV+   +  D E  P 
Sbjct: 66  YAGGKIPGGFLRREGRPPEKVTLTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPD 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           V+++  AS A++L+ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V+
Sbjct: 126 VLAVTGASVAVLLAKMPFYGPMAAVRVGLVGDDFIINPTYKEIKTGELDLVVAGSPDGVI 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLE 241
           MVE  ANQL E  +++AI FG+     +I+A  ++          +E    D    + + 
Sbjct: 186 MVEAGANQLPERDIIEAIDFGYEAASDLIQAQREIMAELGIELIREERPETDPTLENFIR 245

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---------GEIV 292
           +     IK+ L    F  +K  R   +D++K   V    +E +  +            I 
Sbjct: 246 DRAEAPIKQILSQ--FELDKKARDTALDEVKAAAVVAAIAELAEDDPVRVAAGVDSKAIA 303

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVV 351
           +VF+D+  K++R  +++  VR+DGR  + VR +S +V +L  R HGSSLF RG TQ +  
Sbjct: 304 NVFKDVTKKLMRRQIVEDGVRVDGRKLDEVRPVSCRVSVLPSRVHGSSLFNRGLTQVMSA 363

Query: 352 VTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           VTLGT  D Q + D L       ++ HYNF P + GE   M +P RREIGHG LA RAI 
Sbjct: 364 VTLGTPGDAQDLGDDLHPQDEKRYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAIL 423

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP  A FPY +R+VSE+  S+GS+SM +VC S+LALMDAGVP+ +PV+G AMGL+K+G
Sbjct: 424 PVLPPQADFPYVIRVVSEVLSSNGSTSMGSVCASTLALMDAGVPLIQPVSGAAMGLIKEG 483

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+   ++  A+ +AK  RLH
Sbjct: 484 DEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLPLQVIAEAIHKAKPARLH 543

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M   + + R  +  F PR+  + I P+ I  VIG GGK I+ I E+TG K++IDDD
Sbjct: 544 ILEKMLSTIDKPRTTMSPFAPRLLTLKIEPEFIGLVIGPGGKTIKAITEETGVKIDIDDD 603

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GTV IA +       A  +I+ +T       +Y G+V +++  GAFV     ++G++HIS
Sbjct: 604 GTVTIAGNDSERAARAYNIIQGMTRKLNAGDVYVGRVTRIIPIGAFVEILPGKEGMIHIS 663

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV K  D +   D V VK+ + D++G+I L+ 
Sbjct: 664 QLADYRVGKVEDELAVADEVIVKVREIDNKGRINLTR 700


>gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 743

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/708 (39%), Positives = 435/708 (61%), Gaps = 18/708 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +V +  I+   GR +K+ETG++A+Q+DGAV  T G TV+LATV   +    G DF PL
Sbjct: 1   MLNVVSKTIDLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A+G+ PGG+ RRE + ++ EIL  R++DR++RPLF   Y  E  V + +  
Sbjct: 61  QVEYKEKYSAIGRFPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V  ++G+Y++NP  ++ +   +DL V
Sbjct: 121 ADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T D ++MVE E +++ E  +L+ I   H   K   +A  +L++   K  +        
Sbjct: 181 GATMDNIMMVEGEMDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGK--LQKREYSHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             +E++ + + ++     +        K+ R +  + + ++  + ++ E  +     I  
Sbjct: 239 VNDEDLRKKVHDECYARAYEVATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIAR 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VT
Sbjct: 299 YYHDVEKEAMRRAILDEGKRLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DE+ VD +    +  F++HYNF P +TGE        RREIGHG LA RA+  ++
Sbjct: 359 LGTKSDEKLVDDVLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMI 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P    +PY +R++S+I ES+GSSSMATVC  +LAL DAGV I KPV+GIAMGL+ +  G 
Sbjct: 419 PT--DYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGK 476

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QAK+GRLHI
Sbjct: 477 NYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHI 536

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-- 589
           L ++ +   E+R  L    PR+E M I  + I  VIG GGK+I+GI E++GA VNI++  
Sbjct: 537 LGKIMEAQPETRDDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVD 596

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G ++I+ ++   I+AA  MI+ I  +PEV + Y G++  VM +G FV F   ++GL+H
Sbjct: 597 GMGVIEISGTNKPCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLH 656

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           IS++  +R     D  +KEG+++ VKLLD D + GK KLS KV+ +  
Sbjct: 657 ISEVDWKRFETIEDTNLKEGESINVKLLDIDPKTGKFKLSRKVLLEKP 704


>gi|328955438|ref|YP_004372771.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
           PW2]
 gi|328455762|gb|AEB06956.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
           PW2]
          Length = 761

 Score =  698 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/690 (41%), Positives = 422/690 (61%), Gaps = 10/690 (1%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           T   E  G+   LE+G +A+Q+ GA L   G+T  L TVV  +  K   DFFPLTV++ E
Sbjct: 5   TRTFELYGKTYTLESGELAKQATGAALVKQGDTTALTTVVVSKERK-NYDFFPLTVDFNE 63

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YAVG+IPGG+L+RE R ++   L +RMIDR IRP F   ++NE Q+++  +  D  + 
Sbjct: 64  KLYAVGRIPGGFLKREGRASDKGTLTARMIDRPIRPSFPDGFRNEVQIVVTTLVADQTNP 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN--GQYVLNPRLDE-DQGSLDLFVSGTQ 182
             V+S + AS +L L G+PFEGP+   ++      G++++NP  +E +   LDL ++GT+
Sbjct: 124 IDVISTMGASLSLTLGGVPFEGPLACVRIGRSGDSGEFIVNPTYEEIEASDLDLVLAGTR 183

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFSKL 240
           D + MVE  A+++SE  +L A+ FG        +          +E  PI        + 
Sbjct: 184 DFISMVEAGADEISEQDMLAAMEFGQRAIGAFCDEQLAFVDQWERENGPIQRREYPLDEP 243

Query: 241 EEEMSQMI---KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
             E+   I    +++  +    +K  R +++ DLK ++ + F+ E     E EI    + 
Sbjct: 244 VPEVHDRIFTHYDEMAAALADADKLSRVEKVADLKARITAEFTEEERIAWEREIPVNLKK 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + +RT++++   R+DGR ++ +R I  +   L   HGS LF RG TQ + V+ LG  
Sbjct: 304 LEKQAMRTMVVETGERVDGRRADEIRPIMVKDAYLPLVHGSGLFQRGQTQVLSVLALGML 363

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++   +   +M  YNF P +TGE  RMGAP RREIGHG LA RA+ PVLP  +
Sbjct: 364 NESQRLDTIEPVEGKRYMHQYNFPPFSTGETGRMGAPKRREIGHGHLAERALLPVLPDES 423

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY +R+VSE+ ES+GSSSMA+ C S LALMD GVPI +PV+GIAMGL+++    ++LS
Sbjct: 424 EFPYAIRVVSEVLESNGSSSMASTCASCLALMDGGVPIKRPVSGIAMGLIQENGKTVVLS 483

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT+ GITA+QMD K  G++ +I+  AL+QA+ GR  I  +M  
Sbjct: 484 DIQGIEDFLGDMDFKVTGTERGITALQMDNKATGLTFDILRQALEQARAGRAFIRGKMVD 543

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           VL E R Q     PR+  +++P D+IR VIG GGKVIRGI ++TGA ++I +DGTV +  
Sbjct: 544 VLPEPRSQTRSTAPRIVSVSVPVDKIREVIGSGGKVIRGIQDETGASIDIQEDGTVYVGG 603

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    +E A E I+ I  VPE  + + G+VV V  FGAFV     +DGL+HIS+++  RV
Sbjct: 604 T-GTSVEDAVERIKLIVHVPEPGEEFTGRVVSVQPFGAFVSLLPGKDGLLHISRVAQGRV 662

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            K  DV+  GD V V++L+ DDRGKI L  
Sbjct: 663 DKVEDVLNIGDEVRVRVLEVDDRGKISLDR 692


>gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
 gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
          Length = 732

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/705 (41%), Positives = 440/705 (62%), Gaps = 10/705 (1%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +V    I+   GR +++ETG++A+Q+DG+V+   G+T++LATVV ++  ++G DF PL+V
Sbjct: 4   NVIKKSIDLGDGRIIEIETGKLAKQADGSVVVKQGDTMLLATVVSNKDAREGVDFLPLSV 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  A G+IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y  ETQV+I+++  D
Sbjct: 64  DYQEKYAASGRIPGGFLRREARLSDYEVLISRLVDRALRPLFPEDYHAETQVMISLISSD 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
               P  ++ +AASAA+ +S +PF GP+   +V  I+GQ V+NP   + +  +L+  V+G
Sbjct: 124 ENIMPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPSRTDLERATLEFIVAG 183

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           ++  + MVE E+N++ E  +++AI F H   K  +    +L     K        + S L
Sbjct: 184 SEKDINMVEGESNEIQEAELVEAIQFAHEAIKKQVAVQKELTVATGKTEKRTYCHENSDL 243

Query: 241 E--EEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           E  +++     + +   +     K+ R      +  +  +                 F D
Sbjct: 244 ELKDKVYAATYDKVYAIAKAQLPKHERSDAFATIYSEFEATLGENPEESVVFLAKQYFHD 303

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q   VR ++L++ VR+DGR+S+ +R I ++V  L   HGSS+F RG+TQ++  VTLG+ 
Sbjct: 304 VQYDAVRNLLLNENVRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSN 363

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DEQ +D    +  N FM+HYNF   +TGE        RRE+GHG LA RAI  VLP   
Sbjct: 364 DDEQMIDGAFISGYNRFMLHYNFPAFSTGEARPNRGVGRREVGHGNLAMRAIKKVLPPDN 423

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           + PY +R+VS+I ES+GSSSMATVC  +LAL+DAG+ IS PV+GIAMGL+ D     + I
Sbjct: 424 ENPYVIRVVSDILESNGSSSMATVCAGTLALLDAGIKISSPVSGIAMGLISDEKTGKYAI 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKV GT +GITA QMD+K+ G+S +++  AL QAK GRLHIL EM
Sbjct: 484 LSDILGDEDHLGDMDFKVTGTKNGITACQMDLKVNGLSYDVLTEALNQAKEGRLHILGEM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGT 592
           +K +SE R       PR+  + I  + I  VIG GGK+I+ +  +TGA ++I++    G 
Sbjct: 544 AKTISEPREDYKPHAPRIVSLTIDKEFIGAVIGPGGKIIQEMQRETGATISIEEKDNKGL 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V++ +++   +++A   I++I   PEV +IY+G+V  +M FGAFV     +DGL+HIS++
Sbjct: 604 VQVFANNKESVDSAVARIKAIAAKPEVGEIYEGKVKSIMPFGAFVEIMPGKDGLLHISEI 663

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +R      + K GD V VKLLD D +GK+KLS K +     KP
Sbjct: 664 DWKRYESMDGLFKVGDEVRVKLLDVDKQGKLKLSRKALLPRPPKP 708


>gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/
           RNA binding / nucleic acid binding / polyribonucleotide
           nucleotidyltransferase [Arabidopsis thaliana]
 gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 922

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/755 (37%), Positives = 445/755 (58%), Gaps = 60/755 (7%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+
Sbjct: 86  NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVH 145

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +D 
Sbjct: 146 YQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDG 205

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++GT
Sbjct: 206 LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGT 265

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             A+L +E  +N L E+++L A+  G +  +    AI  LAK   K  ++   +    +L
Sbjct: 266 DTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRLPPPEL 325

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------------- 285
            + + ++  E+L  +  I  K  R K I  L++K+++  + +                  
Sbjct: 326 YKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPDL 385

Query: 286 ----------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKK 311
                                             ++E ++  VF+++ +K++R  +++  
Sbjct: 386 LEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEGG 445

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G+  
Sbjct: 446 KRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDE 505

Query: 372 -NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S + 
Sbjct: 506 YKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVI 565

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDED 484
           ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G ED
Sbjct: 566 ESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAED 625

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K      L
Sbjct: 626 ASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPTL 685

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEI 603
            L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +A +
Sbjct: 686 SLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDVASL 745

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E A+ +I  +T VP V  IY+   +K +  +GAFV     R+GL HIS+LS E +AK  D
Sbjct: 746 ERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPED 805

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             K GD + VKL++ +++G+++LS++ +   +   
Sbjct: 806 AYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETD 840


>gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 693

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/685 (46%), Positives = 470/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+  G DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  + G +V Y NG+Y+LNP  +E  +  LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-EEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +ISKLAK+ +K  I       +KL + ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSISKLAKVSSKPRIEYTIYQINKLLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  IP K  R  ++++L+K ++ +  +   + + ++E E++  F DI+  +V
Sbjct: 248 HFFGEIKNAYTIPSKQERNIKLNELRKNVLEHIFTSDVDGNEYSEKEVLEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G +++ +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKSRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRIVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  A +QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQAFEQARTGRLHILGIMNEVIREH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ IM + P +I++V+G GG V++GIVE+TGA+++  D G VKI +     
Sbjct: 548 KESVSDVAPQIHIMNVNPAKIKDVVGRGGSVVKGIVEKTGAQIDTSDSGEVKIFAKDKRS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A+ M+  I    E  +IYKG++VK++D GAFV+  G++DG +  S++  E+    ++
Sbjct: 608 LDLAKSMVEEIVAEVEEGQIYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|158313041|ref|YP_001505549.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. EAN1pec]
 gi|226702654|sp|A8L6G1|PNP_FRASN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158108446|gb|ABW10643.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EAN1pec]
          Length = 729

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/709 (40%), Positives = 426/709 (60%), Gaps = 33/709 (4%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
            +      R ++ ETGR+ARQ+ GAV+A  G+T+VL+     RS K+  DFFPLTV+ +E
Sbjct: 11  VITTPTGARTVRFETGRLARQAAGAVVAHLGDTMVLSATTVSRSPKEQLDFFPLTVDVEE 70

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA G+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D ++ 
Sbjct: 71  RMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTL 130

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG---- 180
             VV++ AASA+ ML+GLPF GP+   +V Y++G ++  P   E +  + D+ V+G    
Sbjct: 131 YDVVAINAASASTMLAGLPFSGPIGATRVGYVDGDWIAFPTHSELERATFDMVVAGRVLE 190

Query: 181 --TQDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             +  A++MVE EA               +E+VV   +       + +  A S+LA   A
Sbjct: 191 DGSDVAIMMVEAEATPGTVALVAGGAPAPTEEVVAAGLEAAKPAIRELCRAQSELAAGAA 250

Query: 227 KE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K     P+ ID  D   + E ++  + E+L  +  I  K  R  +++ ++   V   S +
Sbjct: 251 KPQREFPLFIDYHD--DVLETLTAAVGEELAAALRIAGKAERETELERVRALAVEKVSGQ 308

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
               +  EI   +  +  K+VR+ ++   VR+DGR +  +R++SA+V  + R HGS+LF 
Sbjct: 309 FEGRD-KEISPAYRALTKKLVRSRIVTDGVRIDGRSTTEIRELSAEVDYIPRVHGSALFE 367

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG
Sbjct: 368 RGETQILGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHG 427

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGI
Sbjct: 428 ALAERALLPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGI 487

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+++GD F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQ
Sbjct: 488 AMGLIREGDAFVTLTDILGAEDAYGDMDFKVAGTQEFVTALQLDTKLDGIPASVLAGALQ 547

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RL IL  M++ +     ++    PRV  + IP D+I  VIG  GK+I  I   +G
Sbjct: 548 QARAARLTILEVMAEAIGGP-DEMSAHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSG 606

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A++ ++DDGT+ I ++     E AR  I +I    +PEV + Y G +VK+ +FGAFV   
Sbjct: 607 AEITVEDDGTIYIGAADGPAAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLT 666

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+H+S+L      +RV K  DV+  G  + V++ + D RGKI L
Sbjct: 667 PGKDGLLHVSKLKQLAGGKRVEKVEDVLSVGQKLQVEITEIDARGKISL 715


>gi|288800995|ref|ZP_06406451.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288331929|gb|EFC70411.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 743

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/715 (39%), Positives = 435/715 (60%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T +++   GR + +ETG++A+Q+DG+ + T G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKKVQLSDGRFISVETGKVAKQADGSAVITMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++  AASAAL  S +PF+ P+   +V  ING+YV+NP   + +   +DL V 
Sbjct: 121 DGVDQPDALAGFAASAALACSDIPFDFPISEVRVARINGEYVVNPTFQQMENADMDLMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D +LMVE E +++SE  +++A+   H   KP+ +  ++L+K    +  V    +   
Sbjct: 181 ATKDNILMVEGEMDEVSEQELIEALKVAHEAIKPMCDLQTELSKELGVD--VKREYNHEN 238

Query: 240 LEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--- 290
            +EE+ + +++     C+        +K  R +  D +K+  +  +++ H+   E E   
Sbjct: 239 NDEELREALRKATYDKCYAIALAGDHDKKSRGEAFDQIKEAFIEEYNNAHTDLTEDELSD 298

Query: 291 ----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
               +   ++D+    +R  +LD+  R+DGR  + +R I  +V  L   HGS+LF RG+T
Sbjct: 299 KHALVDRYYDDVMRDSMRRCILDEGKRLDGRKPDEIRPIWCEVSTLPMPHGSALFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLG++ DE+ VD +       F++HYNF P +TGE        RRE+GHG LA 
Sbjct: 359 QSLSTCTLGSKLDEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   +P  A FPYT+R+VS+I ES+GSSSMATVC  +L+LMDAGVP+  PV+GIAMGL
Sbjct: 419 RGLKGQIP--ADFPYTVRLVSQILESNGSSSMATVCAGTLSLMDAGVPMKAPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   + + +LSDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEEKYAVLSDILGDEDHLGDMDFKTTGTLKGITATQMDIKCDGLSFEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HIL++M++ +S  R ++    PR+  + IP + I  +IG GGK+I+ + E+TGA 
Sbjct: 537 KAGREHILSKMTETISAPREEMKPQVPRIVSLEIPKEFIGAIIGPGGKIIQQMQEETGAT 596

Query: 585 VNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + I++    G V++++ +   I+AA + I++I  VPE+ + Y G V  VM +G FV    
Sbjct: 597 ITIEEVDGVGKVQVSAPNKDSIDAALKKIKAIVAVPEIGETYDGVVRSVMPYGCFVEIMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS + +    
Sbjct: 657 GKDGLLHISEIDWKRLESVEEAGIKEGDNITVKLLDIDPKTGKYKLSRRALMPKP 711


>gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium
           nodosum Rt17-B1]
 gi|187610262|sp|A7HK24|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 693

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/683 (39%), Positives = 431/683 (63%), Gaps = 14/683 (2%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR    + G++A+QS G++ A +G++VVLATV    ++ +G DF PLTV + E+ YA GK
Sbjct: 10  GREWLFQHGKVAKQSAGSIWARFGDSVVLATVNVSDNVVEGIDFVPLTVEFMEKFYAAGK 69

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE +P+E+ IL SR+IDR IRPLF K  +NE QVI+ V+  D      V+ + 
Sbjct: 70  IPGGFVKREGKPSESGILSSRLIDRPIRPLFPKNLRNEVQVIVTVLSVDPNCPTDVLGIT 129

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELE 191
           AAS AL +S +PF+G V G Q+ Y++GQ+++ P  ++ +   +D+ V+GT+DA+ MVE E
Sbjct: 130 AASLALNISRVPFDGIVAGVQIGYVDGQFIVFPTAEQLERSKIDIVVAGTKDAITMVEGE 189

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIK- 249
           A +++E+ +L A++  H   K ++    ++ K    E + +    ++ +L E+  + I  
Sbjct: 190 AKEVTEEEMLQALMTAHEAIKQIVAFQEEVIKEFNVEKMPLPEPKYNVELVEKFVEYIDM 249

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE------IVSVFEDIQAKVV 303
            +L    F   K  R +  D+  + +V  F  +++   E +      +   +++I  K++
Sbjct: 250 TELEKRIFARGKQERAEMADEYYESIVQKFFEDNNIPEEEQEEYAIPLKEKYDEISKKLM 309

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R +++++ +R DGR  + +R I+ +VGLL RTHGSSLF RG+TQ++ +VTLG+  +EQ +
Sbjct: 310 RKIIIERGLRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIVTLGSPAEEQII 369

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L       F++HYNF P +TGEV  +  PSRREIGHG LA RA+  ++P   +FPY +
Sbjct: 370 DTLIEEGTKRFILHYNFPPFSTGEVKPLRGPSRREIGHGHLAERAVKAIIPPEDEFPYVI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMATVC +SLALMDAGVP  K VAG+AMGL+ +    +IL+DI G E
Sbjct: 430 RVVSEILESNGSSSMATVCSASLALMDAGVPTKKHVAGVAMGLILEEGKGVILTDIIGLE 489

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DH G MDFKVAGT  GITA QMD K+ G+SE ++  AL QAK  R+ IL+++ + +SE R
Sbjct: 490 DHWGDMDFKVAGTKDGITAFQMDCKVSGVSEELLRQALYQAKEARMFILDKLYETISEPR 549

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAE 602
            +L  + PR+    I P +   +IG GGK I+ I++    ++++DD  G V ++     +
Sbjct: 550 KELSPYAPRISWFFIDPTRSGELIGPGGKTIKSIIKMFDVEISLDDSTGKVTVSGVDAEK 609

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A E I+++     +  +Y G+V +V ++G FV     + GLVH S+L   +      
Sbjct: 610 VQEAVEYIQNMFRDISIGDLYTGKVTRVENYGIFVEIMPGKIGLVHSSKLGNVKPTS--- 666

Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685
             K GD + V++++ DD G+++ 
Sbjct: 667 -FKVGDKIKVEVINIDDAGRLQF 688


>gi|288921719|ref|ZP_06415986.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EUN1f]
 gi|288346891|gb|EFC81201.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EUN1f]
          Length = 729

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/709 (39%), Positives = 427/709 (60%), Gaps = 33/709 (4%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
            +      R ++ ETGR+ARQ+ G+V+A  G+T+VL+     RS K+  DFFPLTV+ +E
Sbjct: 11  VITTPAGPRTVRFETGRLARQAAGSVVAYLGDTMVLSATTVSRSPKEQLDFFPLTVDVEE 70

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R YA G+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D E+ 
Sbjct: 71  RMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPETL 130

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG---- 180
             VV++ AASA+ ML+GLPF GP+   +V +++G+++  P   E +  + D+ V+G    
Sbjct: 131 YDVVAINAASASTMLAGLPFSGPIGATRVGFVDGEWIAFPTHAELERATFDMVVAGRVLE 190

Query: 181 --TQDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             +  A++MVE EA               +E+VV   +       + +  A S+LA   A
Sbjct: 191 DGSDVAIMMVEAEATPGTVGLLAGGSPAPTEEVVAAGLEAAKPAIRELCRAQSELAAGAA 250

Query: 227 KE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K     P+ +D    + + E ++  + E+L  +  I  K  R  +++ ++   V   S +
Sbjct: 251 KPQRDFPLFVDY--HADVLESLTAAVGEELAAALRIAGKAEREAELERVRVLAVEKVSGQ 308

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
               +  EI   +  +  K+VR+ ++   VR+DGR +  +R++SA+V  + R HGS+LF 
Sbjct: 309 FEGRD-KEIGPAYRALTKKLVRSRIVADGVRIDGRSTTEIRELSAEVDYIPRVHGSALFE 367

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG
Sbjct: 368 RGETQILGVTTLAMLRMEQTVDTLNPERTKRYMHNYNFPPYSTGETGRVGSPKRREIGHG 427

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGI
Sbjct: 428 ALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGI 487

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGL+++GD F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQ
Sbjct: 488 AMGLIQEGDAFVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPASVLAGALQ 547

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RL IL  M++ +     ++    PRV  + IP D+I  VIG  GK+I  I   +G
Sbjct: 548 QARAARLTILEVMAEAIGAP-DEMSTHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSG 606

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A++ ++DDGT+ I ++     E AR  I +I    +PEV + Y G +VK+ +FGAFV   
Sbjct: 607 AEITVEDDGTIYIGAADGTSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLT 666

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+H+S+L      +RV K  DV+  G  + V++ + D RGKI L
Sbjct: 667 PGKDGLLHVSKLKQLAGGKRVEKVEDVLSVGQKLQVEITEIDARGKISL 715


>gi|87303144|ref|ZP_01085942.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           5701]
 gi|87282311|gb|EAQ74271.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           5701]
          Length = 678

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/676 (42%), Positives = 407/676 (60%), Gaps = 16/676 (2%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           L   G+T VL T    +  ++G DF PLT +Y+ER YA G+IPG + RRE RP E  IL 
Sbjct: 2   LVECGDTAVLVTATRSK-GREGIDFLPLTCDYEERLYAAGRIPGSFFRREGRPPERAILT 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           +R+IDR +RPLF    +++ QV+   +  D    P V+++  AS A +L+ +PF GP+  
Sbjct: 61  TRLIDRPLRPLFPSWLRDDLQVVATCLSLDERVPPDVLAVTGASIATLLAKIPFSGPMAA 120

Query: 152 AQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
            +V  +   +VLNP   E ++  LDL V+GT   V+MVE  ANQL E  V++AI FG+  
Sbjct: 121 VRVGLLGDDFVLNPSYREIERSELDLVVAGTPTGVVMVEAGANQLPEQDVIEAIDFGYEA 180

Query: 211 CKPVIEAISKLAKMCA-----KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRC 265
              +I+A  KL           EP V D    + LE+E    I E L+   F   K  R 
Sbjct: 181 VGELIKAQQKLLADLGIEQVFPEPQVQDPALPAFLEQECGAGIGEVLKQ--FSLTKAERD 238

Query: 266 KQIDDLKKKM---VSYFSSEHS---SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDS 319
            Q+D +K  +   ++  S +     +     + + ++ I  K++R  +L +  R+DGR+ 
Sbjct: 239 AQLDVIKADVAQKIAGLSDDDPIRVAAAGKALGNTYKGITKKLMRAQILSEGKRVDGRNL 298

Query: 320 ETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHY 378
           + VR ISA VG+L  R HGS LF RG TQ +   TLGT  D Q +D L+      ++ HY
Sbjct: 299 DEVRPISAAVGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPMGEKTYLHHY 358

Query: 379 NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
           NF P + GE   M +P RRE+GHG LA RAI PVLP    FPY LR+VSE   S+GS+SM
Sbjct: 359 NFPPYSVGETRPMRSPGRREVGHGALAERAIVPVLPPKESFPYVLRVVSECLSSNGSTSM 418

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
            +VCGS+LALMDAGVP+  PV+G AMGL+K+GD+  IL+DI G ED LG MDFKVAGT+ 
Sbjct: 419 GSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVAGTEK 478

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           GITA+QMDMKI G++ + +  A+ QA+  RLHIL +M + + + R  L    PR+    I
Sbjct: 479 GITALQMDMKISGLAVSTIAEAVNQARPARLHILEKMLEAIGKPRNVLSPHAPRLLSFRI 538

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P+ I  VIG GG+ I+GI E+T  K++I+D G V IAS   A  E A+ +I  +T    
Sbjct: 539 DPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQRIIEGLTRRVS 598

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             +++ G V +++  GAFV     ++G++HISQLS  RV K  DV+K GD V V++ + D
Sbjct: 599 EGEMFNGSVTRIIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVIKVGDAVTVRVREID 658

Query: 679 DRGKIKLSMKVVDQNT 694
           +RG+I L+++ V Q T
Sbjct: 659 NRGRINLTLRGVAQET 674



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 129/348 (37%), Gaps = 36/348 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLKDGQDFFPL-----TVNYQER 66
           RP+    G + ++  G+ L   G T VL+T         ++  D  P+       +Y   
Sbjct: 302 RPISAAVGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPMGEKTYLHHYNFP 361

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+      R    P   E+    + +R+I P+    + +    +V+   +  +  +
Sbjct: 362 PYSVGET-----RPMRSPGRREVGHGALAERAIVPVLPPKESFPYVLRVVSECLSSNGST 416

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVS 179
           S  + S+  ++ ALM +G+P + PV GA +  I  G  V        +++  G +D  V+
Sbjct: 417 S--MGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVA 474

Query: 180 GTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           GT+  +  ++++     L+   + +A+         ++E   K+ +   K   V+     
Sbjct: 475 GTEKGITALQMDMKISGLAVSTIAEAVNQARPARLHILE---KMLEAIGKPRNVLSPHAP 531

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEK--YVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             L   +   +   +        K    R     D++   +   +S H      E   + 
Sbjct: 532 RLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIAS-HDGAAAEEAQRII 590

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           E +  +V    M +            +  I A V +L    G     +
Sbjct: 591 EGLTRRVSEGEMFN-------GSVTRIIPIGAFVEILPGKEGMIHISQ 631


>gi|332881702|ref|ZP_08449350.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680341|gb|EGJ53290.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 742

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/715 (39%), Positives = 430/715 (60%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V    +E   GR + +ETG++A+Q+DGAV+ T G T++LATV   +    G DF PL 
Sbjct: 1   MNVIKKTVELPDGRTISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+  A G+ PGG+ +RE + ++ EIL  R++DR++RPLF   Y  E  V + +   
Sbjct: 61  VEYREKFAAAGRFPGGFTKREGKASDYEILTCRLVDRALRPLFPSNYHAEVYVNVILYSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P  ++  AASAAL +S +PFEGP+   +V  +NG+YV+NP   + +Q  +D+ V 
Sbjct: 121 DGVDMPDALAGFAASAALAVSDIPFEGPISEVRVARVNGEYVVNPTFAQLEQADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ ++MVE E  +++E  +L+A+   H   KP+     +L K   KE  V        
Sbjct: 181 ATEENIMMVEGEMKEVTEQDLLNALKVAHEAIKPMCRLQKELEKEAGKE--VKREYCHEV 238

Query: 240 LEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKK-------KMVSYFSSEHSSW 286
            +E++ + +K+    + +        +K+ R     ++++       +  +  S +  + 
Sbjct: 239 NDEDLREEVKKACYDAAYRIAQEGNRDKHAREDAFMEIRENFKLSYAEAHADLSEDELAE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
               I   + D++   +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T
Sbjct: 299 KNALIDRYYHDVERDAMRRCVLDEGKRLDGRATTDIRPIWCEVSPLPGPHGSAIFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 QSLSTCTLGTKLDEKIIDEVLDQSKMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   +P    FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RGLKGQIPT--DFPYTVRVVSDILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   + + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEEKYAVLSDILGDEDHLGDMDFKTTGTIDGLTATQMDIKCDGLSYEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HIL ++++ +   R +L    PR+  + IP + I  VIG GGK+I+GI E+TGA 
Sbjct: 537 KAGREHILGKLTECMPAPRAELKPHVPRIVQITIPKEFIGAVIGPGGKIIQGIQEETGAV 596

Query: 585 VNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + I++    G V+++ ++   I+AA   I+SI  VPEV ++Y G +  VM +GAFV F  
Sbjct: 597 ITIEETDGVGVVQVSGANKDVIDAALGKIKSIVAVPEVGEVYDGVIRSVMPYGAFVEFMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            RDGL+HIS++  +R+    +  +KEGD + VKL+D D + GK KLS +V+ +  
Sbjct: 657 GRDGLLHISEIDWKRLETVEEAGLKEGDHIQVKLVDIDQKTGKFKLSRRVLLEKP 711


>gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 693

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/685 (46%), Positives = 469/685 (68%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+  G DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGSFSPDM 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  + G +V Y NG+Y+LNP  +E  +  LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDIIAGVRVGYTNGKYILNPNKEELKESDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-EEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I KLAK+ +K  I       +KL + ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSIGKLAKVSSKPRIEYTIYQINKLLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  IP K  R  ++++L+K ++ +  +   + + + E EI+  F DI+  +V
Sbjct: 248 HFFGEIKNAYTIPSKQERNIKLNELRKNVLEHIFTSDVDGNEYAEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G +++ +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKSRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRIVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARTGRLHILGIMNEVIREH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ IM + P +I++V+G GG V++GIVE+TGA+++  D G VKI +     
Sbjct: 548 KESVSDVAPQIHIMNVNPAKIKDVVGRGGSVVKGIVEKTGAQIDTSDSGEVKIFAKDKRS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A+ M+  I    E  +IYKG++VK++D GAFV+  G++DG +  S++  E+    ++
Sbjct: 608 LDLAKSMVEEIVAEVEEGQIYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|330466373|ref|YP_004404116.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
           AB-18-032]
 gi|328809344|gb|AEB43516.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
           AB-18-032]
          Length = 789

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/704 (39%), Positives = 420/704 (59%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  ++  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   ++ +++GQ+V  P  +E  + + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELSRATFDMVVAGRALADGDVA 199

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA +             +E+VV   +       + +  A S+LA++ AK     
Sbjct: 200 IMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D  D +   + ++Q  + D+  +  I  K  R + +D +K ++V           E
Sbjct: 260 PVFLDYSDDAY--DAVAQFARADVAEALQIAGKADREEALDAIKSRLVEELGPRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R ++A+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLNAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQALDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL+ M + +     ++ ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 HEARQTILDVMQRAIEAP-AEMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA E I +I +  +P+    + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVERINAIANPTMPKAGDRFLGTVVKTAPFGAFISLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDRVEVEIADIDQRGKIYL 719



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 30/257 (11%)

Query: 314 MDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           +D     T R+I+   G L R   GS +   G+T  +   T G +  EQ+          
Sbjct: 15  IDNGSFGT-REITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPKEQFDFFPLTVDVE 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           + M     +P +     R G PS   I   RL  R + P   +  +    +++V  I   
Sbjct: 74  ERMYAAGRIPGSF--FRREGRPSEDAILTCRLIDRPLRPSFVKGLRNE--VQVVETILAL 129

Query: 433 DG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           D      +  +  +S++   +G+P S P+    M  V    D   ++  + +E      D
Sbjct: 130 DPQHPYDVVAINAASMSTKLSGLPFSGPIGATRMAHV----DGQWVAFPTHEELSRATFD 185

Query: 491 FKVAGT-----DSGITAMQMDMKIGGI----------SENIMV---MALQQAKRGRLHIL 532
             VAG      D  I  ++ +     +          +E ++     A + A R      
Sbjct: 186 MVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQ 245

Query: 533 NEMSKVLSESRLQLGEF 549
           +E+++V ++   +   F
Sbjct: 246 SELAEVAAKPVAEFPVF 262


>gi|56707819|ref|YP_169715.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670290|ref|YP_666847.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|224456890|ref|ZP_03665363.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370315|ref|ZP_04986320.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874633|ref|ZP_05247343.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81597693|sp|Q5NGX7|PNP_FRATT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123169466|sp|Q14IC9|PNP_FRAT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56604311|emb|CAG45332.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320623|emb|CAL08715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568558|gb|EDN34212.1| hypothetical protein FTBG_00070 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840632|gb|EET19068.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158995|gb|ADA78386.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 693

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARAGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 758

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/698 (44%), Positives = 444/698 (63%), Gaps = 6/698 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    I+W GR L LETG+IARQ+DG+V+        L+     +  ++  DF PL 
Sbjct: 1   MFEIIKKSIDWEGRTLSLETGKIARQADGSVVVKLWRYFYLSHCCTKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS-LDLFV 178
           D  +SP V +++   AAL +SG+PF   + G  V    N  Y+LNP + E + S LDLF+
Sbjct: 120 DTVNSPEVPALIGTVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASNLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ VL+AI FGH   +PVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVLNAIKFGHEHLQPVIKLIKEFADTVGNKPESFAPVDIS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +  ++D   +     K  R + ++ ++  +++      +  +E  I    +  
Sbjct: 240 DITQEL-EKYRKDFEEAYSKTVKQERVQALEVVRNNILNTLKE--AGKDEKLITYAVKSF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+D R  + +R I  +  +L +THGS+LF RG TQA+VV  LGT +
Sbjct: 297 ERSLVREMIRRKSVRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF P A GE S + AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPPFAVGEASAIRAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+S+ALMD GVPI  PVAGIAMGL+KD ++ IILSD
Sbjct: 417 FPYTIRVVSEIMESDGSSSMATVCGTSIALMDTGVPIKAPVAGIAMGLIKDKNEHIILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  GITA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGITALQMDMKIPGISFEIVEKSLEQAKVGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE R  + +  PRV    I  D+I   IG  GK IR + E++ AK+ I DDG V + + 
Sbjct: 537 ISEHRKDIKDHVPRVLSFYIDKDKISAAIGTKGKNIRSVCERSNAKIEIGDDGKVSVFAI 596

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  E EAA+ M+       E   I   +VVK+      +     R G +HIS+++ + V 
Sbjct: 597 SSTEAEAAKNMMIDSITELEQGSIIDAKVVKIEKSIVELELLNGRKGKMHISEVANQHVE 656

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
              D++K+GDT    ++DF+  G  KLS + VDQ TG+
Sbjct: 657 SIEDILKQGDTFKALIIDFEKGGCPKLSRRRVDQETGE 694


>gi|260910888|ref|ZP_05917531.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634996|gb|EEX53043.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 741

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/715 (39%), Positives = 424/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  I    GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTISLPDGRTISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +P +NEIL SR++DR +RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++ +AAS+A+  S +PF+  +   +V  +NG+YV+NP  ++  +  +D+ V 
Sbjct: 121 DGVDQPDALAGLAASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFEQMKEADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E ++++E  ++ A+   H   KP+     +LAK   K+  V    +   
Sbjct: 181 ATKDNIMMVEGEMDEVTEQDLIQALKVAHEAIKPMCTMQEELAKELGKD--VKREYEHEV 238

Query: 240 LEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMV--------SYFSSEHSSW 286
            +E++ + + ++L    +        K  R    D +    +           ++E    
Sbjct: 239 NDEDLRKQMNDELYQPVYDVTKQALAKQERHDAFDKIVTDFLEKYDAENTEKLTAEELEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   ++D+    +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHALAARYYDDVLRDAMRRCILDEGKRLDGRKTDEIRPIWCEVNSLPMPHGSAIFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+ DE+ VD +       F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 QSLSTCTLGTKLDEKMVDDVLDKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RGLKGQIP--ADYPYTVRVVSQILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   + + ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEEKYAILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HIL ++++ ++E R +L    PR+  + IP + I  VIG GGK+I+ + E TG  
Sbjct: 537 KAGREHILGKLTETIAEPRPELKPQVPRIVQIEIPKEFIGAVIGPGGKIIQQMQEDTGTT 596

Query: 585 VNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + ID+    G V++++   A I+AA   IR+I  VPEV +IY+G V  VM +G FV    
Sbjct: 597 ITIDEVDGKGKVQVSAPDKASIDAALSKIRAIVAVPEVGEIYEGTVRSVMPYGCFVEIMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS +V+ +  
Sbjct: 657 GKDGLLHISEIDWKRLETVEEAGIKEGDKMQVKLLDIDPKTGKYKLSRRVLMEKP 711


>gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           RA-YM]
 gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Riemerella anatipestifer RA-GD]
          Length = 711

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/698 (41%), Positives = 440/698 (63%), Gaps = 17/698 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DGAV+   G T++LATVV  +    G DF PLTV+Y+E+  A G
Sbjct: 15  DGREITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFLPLTVDYREKFGAAG 74

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG + RRE++P+++E+L  R++DR IRPLF   +  E QV+I+++ +D +  P  ++ 
Sbjct: 75  RIPGNFFRREAKPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMISLISYDEKVMPDSLAG 134

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFVSGTQDAVLMVE 189
           +AASAA+ ++ +PF GP    +V   +G   +NP  +  Q    LD+ V  T+D+++MVE
Sbjct: 135 LAASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSWETLQSGVELDIMVGATKDSIVMVE 194

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249
            E ++++E  +L+AI F H E K  +EA  +LA+   K             +EE+ + I 
Sbjct: 195 GEMDEITEQEMLEAITFAHQEIKTQVEAQERLAQKVGKA-FPKREYCHETHDEELKKQIW 253

Query: 250 EDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +      +        K  R ++   + ++ ++ ++ E            F D+Q + VR
Sbjct: 254 DYAYQKYYDIAKNPSAKEERGEKFSAVVEEFLAQYTEEELEEKADLAKVYFHDVQKEAVR 313

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L++ +R+DGR+++ +R I ++V  L   HGSS+F RG+TQ++  VTLG+  D   +D
Sbjct: 314 QLILNENIRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGSLMDANRID 373

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S+       F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P   + PYT+R
Sbjct: 374 SVITQHDERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKVMIP--EETPYTIR 431

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482
           IVS+I ES+GSSSMATVC  +LALMDAG+P+ KPV+GIAMGL+ D +   + +LSDI GD
Sbjct: 432 IVSDILESNGSSSMATVCAGTLALMDAGIPMRKPVSGIAMGLITDKESGKWTVLSDILGD 491

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT++GITA QMD+KI G++ +IM  AL QAK GRLHIL EM K +SE 
Sbjct: 492 EDHLGDMDFKVTGTENGITACQMDIKIQGLTMDIMEQALMQAKNGRLHILGEMLKTISEP 551

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASSS 599
           R  +    P++ +M IP D I  VIG GGKVI+ + ++TG  + I++ G    ++I+ + 
Sbjct: 552 RADVKPHAPKMVMMEIPKDFIGAVIGPGGKVIQQMQKETGTVITIEEKGEIGYIEISGTD 611

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             +I AA   I  IT +P V ++Y+G+VVKVMDFGAFV      +GL+HIS++  +R  K
Sbjct: 612 REKINAAIAQINEITFIPIVGEVYQGKVVKVMDFGAFVQLAKGTEGLLHISEIDWKRTDK 671

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                KEGD V VK + +DDR K+KLS KV+     + 
Sbjct: 672 VP--YKEGDIVEVKFMGYDDRKKMKLSRKVLLPKPPRE 707


>gi|208779001|ref|ZP_03246347.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
 gi|208744801|gb|EDZ91099.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
          Length = 693

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYAEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|118497208|ref|YP_898258.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. novicida U112]
 gi|194323507|ref|ZP_03057284.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           novicida FTE]
 gi|254372573|ref|ZP_04988062.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|254374032|ref|ZP_04989514.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3548]
 gi|187610266|sp|A0Q5I9|PNP_FRATN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118423114|gb|ABK89504.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           U112]
 gi|151570300|gb|EDN35954.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3549]
 gi|151571752|gb|EDN37406.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3548]
 gi|194322362|gb|EDX19843.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           novicida FTE]
          Length = 693

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
           TCF52B]
 gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
           TCF52B]
          Length = 697

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/686 (39%), Positives = 435/686 (63%), Gaps = 11/686 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E  GR + ++ G++A+QS G+V   +G++VVLAT        +G DF PLTV YQE+ YA
Sbjct: 9   ELFGRKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVPLTVEYQEKFYA 68

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K  +N+ Q+I+ V+  D  + P V 
Sbjct: 69  AGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNTPPDVT 128

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMV 188
            ++AAS AL +S +PFEG V G ++ Y++G++V+ P  ++ + S LD+ V+G++DA+ MV
Sbjct: 129 GIIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKDAITMV 188

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247
           E EA +++E+ +++A++  H+  K +IE   ++      + + I+    ++ L  +  +M
Sbjct: 189 EGEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKMEIEEPKPNETLIGKFEEM 248

Query: 248 I-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI------VSVFEDIQA 300
           I +E+LR    I EK  R  ++ + + +++     +    ++ +I         F++   
Sbjct: 249 ISEEELRDKLLIKEKLERSAKLKEYRDQILEKIFEDVEMEDDEKILQESLLKEYFDERTK 308

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K++R +++++ +R DGR  + +R I+ +VG+L RTHGS+LF RG+TQ++ +VTLG   +E
Sbjct: 309 KLMRKIIIEEGIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEE 368

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q VD++       F++HYNF P + GEV  +  P RREIGHG LA RA+  V+P   +FP
Sbjct: 369 QIVDTIMEEGTKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVVPSEEEFP 428

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           Y +R+VSEI ES+GSSSMATVC  SLALMDAGVPI   VAG+AMGL+ +    ++L+DI 
Sbjct: 429 YVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIEDGQEVVLTDIQ 488

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G EDH G MDFKVAGT +GITA QMD K+ G+ E ++  ALQQAK  R+ IL+ M   + 
Sbjct: 489 GLEDHWGDMDFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARMKILDIMFNTIE 548

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKIASSS 599
           + R  L  + P +  + I P ++  +IG GGKVI+ I+++   +++IDD  G V I    
Sbjct: 549 KPRESLSPYAPLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDDTTGKVSIYGKD 608

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++  A E I++IT   EV  +++G++ ++  +G FV     + GL H S+L  +    
Sbjct: 609 QKKVNEAIEYIKTITKDIEVGDVFEGKITRIEPYGIFVELMPGKIGLAHSSKLGED-SKN 667

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +  K GDT+ V +++ D+ G+I+L
Sbjct: 668 FKEKYKIGDTIKVIVVNIDENGRIQL 693


>gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
           3523]
          Length = 693

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/685 (45%), Positives = 465/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIVLETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGADFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  + G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVIAGVRVGYTNGKYILNPNKQDLKDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNVIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GI+E+TGA+++  D G VK+ +     
Sbjct: 548 KKAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIIEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D GAFV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVTMIEEIVAEVEEGQVYKGKIVKLLDSGAFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 922

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/755 (37%), Positives = 444/755 (58%), Gaps = 60/755 (7%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+
Sbjct: 86  NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVH 145

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +D 
Sbjct: 146 YQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDG 205

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++GT
Sbjct: 206 LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGT 265

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             A+L +E  +N L E+++L A+  G +  +    AI  LAK   K  ++   +    +L
Sbjct: 266 DTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRLPPPEL 325

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------------- 285
            + + ++  E+L  +  I  K  R K I  L++K+++  + +                  
Sbjct: 326 YKHVKELAGEELTKALQIKSKISRRKAISPLEEKVLTILTEKGYVIDEVAFGTIEAQPDL 385

Query: 286 ----------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKK 311
                                             ++E ++  VF+++ +K++R  +++  
Sbjct: 386 LEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEGG 445

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G+  
Sbjct: 446 KRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDE 505

Query: 372 -NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S + 
Sbjct: 506 YKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVI 565

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDED 484
           ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G ED
Sbjct: 566 ESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAED 625

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K      L
Sbjct: 626 ASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPTL 685

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEI 603
            L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +A +
Sbjct: 686 SLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDVASL 745

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E A+ +I  +T VP V  IY+   +K +  +GAFV     R+GL HIS+LS E +AK  D
Sbjct: 746 ERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPED 805

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             K GD + VKL++ ++ G+++LS++ +   +   
Sbjct: 806 AYKVGDRIDVKLIEVNEEGQLRLSVRALLPESETD 840


>gi|262281984|ref|ZP_06059753.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
           2_1_36FAA]
 gi|262262438|gb|EEY81135.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
           2_1_36FAA]
          Length = 668

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/638 (40%), Positives = 394/638 (61%), Gaps = 7/638 (1%)

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GK PGG+ +RE RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D ++SP
Sbjct: 1   MYAAGKYPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASP 60

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAV 185
            + +M  +S AL +S +PF GP+ G QV Y++G++++NP  ++ + SL +L V+GT++A+
Sbjct: 61  QMAAMFGSSLALSISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELTVAGTKEAI 120

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEM 244
            MVE  A +LSED++L+A++ GH   K +I    ++     KE   ++      +L+ E+
Sbjct: 121 NMVESGAKELSEDIMLEALLKGHQAVKELIAFQEEIVAAVGKEKAEVELLHVDEELQAEI 180

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQ 299
                 DL+ +  + EK  R      +K ++ + +  +++   E      ++  + E ++
Sbjct: 181 VAAYNSDLQKAVQVEEKLAREAATQAVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQME 240

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
              VR ++ + KVR DGR  + +R + A+V  L R HGS LF RG TQA+ V+TL    +
Sbjct: 241 HAEVRRLITEDKVRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGE 300

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            Q VD L    +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP   +F
Sbjct: 301 TQIVDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLPSLEEF 360

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+  G ++ +L+DI
Sbjct: 361 PYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISYGSNYTVLTDI 420

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ +   +
Sbjct: 421 QGLEDHFGDMDFKVAGTREGITALQMDIKIEGITAEILTEALAQAKKARFEILDLIEATI 480

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              R +L    P+++ + I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I SS 
Sbjct: 481 PAPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSD 540

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              I  A+E+I  +    +V+++Y  +VV++  FGAFV+     D LVHIS+L+  R   
Sbjct: 541 QDAINRAKEIIAGLVREAKVDEVYHAKVVRIEKFGAFVNLFDKTDALVHISELAWTRTNN 600

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DVV+ GD V VK++  D +G++  SMK +     KP
Sbjct: 601 VEDVVQIGDEVDVKVIKIDAKGRVDASMKALLPRPPKP 638


>gi|134302408|ref|YP_001122378.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187610267|sp|A4IZA6|PNP_FRATW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134050185|gb|ABO47256.1| putative polyribonucleotide nucleotidyltransferase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 693

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   +P +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAVAPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|288929802|ref|ZP_06423645.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288328903|gb|EFC67491.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 742

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/715 (39%), Positives = 425/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  I    GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTISLPDGRTISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +P +NEIL SR++DR +RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKPGDNEILTSRLVDRVLRPLFPSNYHAEVYVNVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++ +AAS+A+  S +PF+  +   +V  +NG+YV+NP  ++  +  +D+ V 
Sbjct: 121 DGVDQPDALAGLAASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFEQMKEADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E ++++E  ++ A+   H+  KP+     +LAK   K+  V    D   
Sbjct: 181 ATKDNIMMVEGEMDEVTEQDLIQALKVAHDAIKPMCTMQEELAKELGKD--VKREYDHEV 238

Query: 240 LEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMV--------SYFSSEHSSW 286
            +E++ + + ++L    +        K  R    D +    +           ++E    
Sbjct: 239 NDEDLRKQMNDELYQPVYDVTKQALAKQERHDAFDKIVTDFLEKYDAENTEKLTAEELEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   ++D+    +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHALAARYYDDVLRDAMRRCILDEGKRLDGRKTDEIRPIWCEVSSLPMPHGSAIFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+ DE+ VD +       F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 QSLSTCTLGTKLDEKMVDDVLDKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RGLKGQIP--ADYPYTVRVVSQILESNGSSSMATVCAGTLALMDAGVPLKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   + + ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEEKYAILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HIL ++++ ++E R +L    PR+  + IP + I  VIG GGK+I+ + E TG  
Sbjct: 537 KAGREHILGKLTETIAEPRPELKPQVPRIVQIEIPKEFIGAVIGPGGKIIQQMQEDTGTT 596

Query: 585 VNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + ID+    G V++++   A I+AA   IR+I  VPEV +IY+G V  VM +G FV    
Sbjct: 597 ITIDEVDGKGKVQVSAPDKASIDAALSKIRAIVAVPEVGEIYEGTVRSVMPYGCFVEIMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS +V+ +  
Sbjct: 657 GKDGLLHISEIDWKRLETVEEAGIKEGDKMQVKLLDIDPKTGKYKLSRRVLMEKP 711


>gi|328676680|gb|AEB27550.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
           Fx1]
          Length = 693

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKARIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNAYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|254696416|ref|ZP_05158244.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260760788|ref|ZP_05873131.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260671220|gb|EEX58041.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 528

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/528 (62%), Positives = 413/528 (78%), Gaps = 4/528 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+ H VEIEW GRPL LETG+IARQ+DGAVLATYGET VLATVV  +  K GQDFFPLT
Sbjct: 1   MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+TYA GKIPGGY +RE RP+ENE L+SR+IDR IRPLF   YKN+TQV+I V+QH
Sbjct: 61  VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           DLE++P ++SMVAASAAL +SG+PF GP+ GA+V YI+G+YVLNP +DE  +  LDL V+
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT +AVLMVE EA +L EDV+L A++FGH   +PVI+AI KLA++ AKEP     +D S+
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQPEDLSE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           LE ++  +++ DLR +  I EK  R   +D  K K   +F  E    +  +  +  ++F+
Sbjct: 241 LEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATIFK 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +QAK+VR  +LD   R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT
Sbjct: 301 HLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGT 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
            EDEQ +D+L+GT +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP  
Sbjct: 361 GEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAA 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            QFPYT+R VSEITES+GSSSMATVCG+SLALMDAGVPI +PVAGIAMGL+K+G+ F +L
Sbjct: 421 EQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFAVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           SDI GDEDHLG MDFKVAGT+ GIT++QMD+KI GI+E IM +AL+QA
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQA 528


>gi|315606750|ref|ZP_07881760.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
           33574]
 gi|315251605|gb|EFU31584.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
           33574]
          Length = 780

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/714 (39%), Positives = 429/714 (60%), Gaps = 25/714 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +  ++EIL SR++DR++RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKANDDEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++  AASAA+  S +PF+ P+   +V  + G+YV+NP   +     +DL V 
Sbjct: 121 DGVDQPDALAGFAASAAMACSDIPFDYPISEVRVARVGGEYVINPTFQQMADADMDLMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E  ++SE  ++ A+       KP+ E   +L+K    +  V    D   
Sbjct: 181 ATKDNIMMVEGEMKEVSEQDLIGALKVAAEAIKPMCELQEELSKELGTD--VKREYDHEV 238

Query: 240 LEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS- 293
            +EE+ + IK +L    +       EK+ R    D + +  +  + + H+  +E E+   
Sbjct: 239 NDEELREQIKSELYQPVYDVNKQALEKHARQDAFDKILEDFLEKYDAAHTELSEDELDEK 298

Query: 294 ------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
                  ++D+    +R  +LD+ +R+DGR +  +R I ++V  L   HGS+LF RG+T 
Sbjct: 299 HAEAHRYYDDVMRDAMRRCILDEGLRLDGRATTEIRPIWSEVSPLPMPHGSALFQRGETM 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++   TLGT+ DE+ VD +       F++HYNF P +TGE        RRE+GHG LA R
Sbjct: 359 SLSTCTLGTKLDEKLVDDVLMKGYQRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWR 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
            +   +P  A FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+
Sbjct: 419 GLKDQIP--ADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLI 476

Query: 468 KD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+   D + ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK
Sbjct: 477 KNPGEDKYAILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAK 536

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
            GR HILN+M + +SE R ++    PR+E   IP + I  VIG GGK+I+ + E TGA +
Sbjct: 537 AGREHILNKMMETISEPRAEMKPQVPRIEAFEIPKEFIGAVIGPGGKIIQQMQEDTGATI 596

Query: 586 NIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            ID+    G V++++ +   I+AA   IRSI  +PEV ++Y+G V  +M +G FV     
Sbjct: 597 TIDETDGVGKVQVSAPNKDAIDAAIAKIRSIVAIPEVGEVYEGTVRSIMPYGCFVEILPG 656

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           +DGL+HIS++  +R+    +  +KEGD + VKL++ D + GK KLS +V+ +  
Sbjct: 657 KDGLLHISEIDWKRLETVEEAGIKEGDKLKVKLMEIDPKTGKYKLSRRVLLEKP 710


>gi|86608913|ref|YP_477675.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502399|sp|Q2JLJ5|PNP_SYNJB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86557455|gb|ABD02412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 712

 Score =  693 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/697 (42%), Positives = 427/697 (61%), Gaps = 18/697 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +T  I + GR + +  G +A Q+   V  T GET +L T       + G DF PL V+Y+
Sbjct: 4   YTRSISFYGREIDINIGLMAPQAGCGVWLTSGETSILVTATRQP-GRPGVDFMPLLVDYE 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPGGYLRRE RP E   LISR+IDR IRPLF +  +++ QV+   +  D   
Sbjct: 63  ERLYAAGRIPGGYLRREGRPPERATLISRLIDRPIRPLFPEWLRDDVQVVATTLSVDDTV 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P V+ ++ AS A+  + +PF GPV   +V  +  +++LNP   E + G LDL V+G  D
Sbjct: 123 PPDVLCILGASLAIHGARIPFNGPVAAVRVGLVKDEFILNPTYAEIEAGDLDLVVAGCAD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK-----MCAKEPIVIDSKDFS 238
            V+MVE  ANQL E  V++AI FG    + +++A  ++            P   + +  +
Sbjct: 183 GVIMVEAGANQLPEKDVVEAIEFGFEAIQELLKAQQQVLADLNITPVELPPPPKNEELIA 242

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGE 290
            +EE+  + I+  LR      +K  R +Q+++LK K+ +                 N  E
Sbjct: 243 FVEEQAQEGIRSILR---QFLDKTSREQQLEELKAKLEAQIQERPEGDPLRLYLLENPKE 299

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           + + F+ +  K++R  +L + VR+DGR  + VR +S +VGL+ R HGS+LF RG TQ + 
Sbjct: 300 LDNQFKALLKKLMRQQILQEGVRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLS 359

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + TLGT  D Q +D L       +M HYNF   + GE     +P RREIGHG LA RA+ 
Sbjct: 360 ITTLGTPGDAQELDDLHPVDEKRYMHHYNFPGFSVGETRPSRSPGRREIGHGALAERALV 419

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP+  +FPY +R+VSE+  S+GS+SM +VCGS+L+LMDAGVPI  PV+G+AMGL+K+G
Sbjct: 420 PVLPKEEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLIKEG 479

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+  IL+DI G ED LG MDFKVAGT +GITA+QMDMKI GI+ +++  A++QAK GR  
Sbjct: 480 DEVRILTDIQGIEDFLGDMDFKVAGTRAGITALQMDMKITGITVDVVEQAIRQAKAGREF 539

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL++M + ++  R QL +  PR+    + P+ I  +IG GGK +RGI E TGAKV+I DD
Sbjct: 540 ILDKMLETIAAPRPQLAKTAPRLLTFKVDPEDIGKIIGPGGKTVRGITEATGAKVDISDD 599

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           GT+ ++SS   + EAAR MI ++    E  ++Y G+V +++  GAFV F   ++G++HIS
Sbjct: 600 GTITVSSSVGGQAEAARAMIENLVRRVEEGQVYLGKVTRIIPIGAFVEFLPGKEGMIHIS 659

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           QL+  RV +  D V   D V VK+   D +G+I L+ 
Sbjct: 660 QLAEYRVGRVEDEVAVEDEVVVKVRSIDHKGRINLTR 696


>gi|302528525|ref|ZP_07280867.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
 gi|302437420|gb|EFL09236.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
          Length = 749

 Score =  693 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/717 (39%), Positives = 427/717 (59%), Gaps = 32/717 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   E T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 21  FGTRTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKEHFDFFPLTVDVEERMYA 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL +R+IDR +RP F+   +NE QV+I V   + +    V+
Sbjct: 81  AGRIPGAFFRREGRPSTDAILTARLIDRPLRPSFADGLRNEIQVVITVQSLNPDDPYDVL 140

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  ++GLPF GPV G +V  I  Q+V  P   + ++ + ++ V+G       A
Sbjct: 141 AINAASASTQIAGLPFSGPVGGVRVALIEDQWVAFPTWPQLEKATFNMVVAGRIVGDDVA 200

Query: 185 VLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKLAKMCAKE--PI 230
           ++MVE E  + + D++          A+  G    KP I    EA  +LA   AK     
Sbjct: 201 IMMVEAEGTEHTLDLIAAGGKAPDEAAVAEGLEAAKPFIRVLCEAQQRLAADAAKPTGEF 260

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSSWN 287
            +       + E ++ +  ++L  +  I  K  R    D++K  ++        E     
Sbjct: 261 PVYPAYQPDIYEAVAAIASDELAKALQIAGKQERDAATDEVKATVLEKLGLGEGEAFEGR 320

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           + E+   F+ +  K++R  +L +K+RMDGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 321 DKEVGGAFKALTKKIMRNRVLTEKIRMDGRGLTDIRQLSAEVAVVPRAHGSALFERGETQ 380

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + + TL     EQ +DSLS      ++ HYNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 381 ILGITTLNMLRMEQQIDSLSPETTKRYLHHYNFPPFSTGETGRVGSPKRREIGHGMLAER 440

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP+  +FPY +R VSE   S+GS+SM +VC S++ L++AGVP+  PVAGIAMGLV
Sbjct: 441 ALVPVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMGLLNAGVPLKAPVAGIAMGLV 500

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    ++ L+DI G ED LG MDFKVAGT   ITA+Q+D K+ GI   ++  AL+Q
Sbjct: 501 SDEVDGETRYVALTDILGAEDALGDMDFKVAGTKDIITALQLDTKLDGIPSEVLAAALKQ 560

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK  RL IL+ +++ +     ++  + PRV  + IP D+I  VIG  GK+I  I E+TGA
Sbjct: 561 AKDARLTILDVIAEAIDGP-DEMSPYAPRVTSVKIPVDKIGEVIGPKGKMINSITEETGA 619

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGT+ + ++     EAA   I +I    +P+V + + G VVK   FGAFV    
Sbjct: 620 DISIEDDGTIYVGAADGPSAEAAIGKINAIANPQLPKVGERFLGTVVKTAAFGAFVSLLP 679

Query: 642 ARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +DGLVHIS+L   +R+AK  DVV  GD + V++ D D+RGKI L + V +++  KP
Sbjct: 680 GKDGLVHISKLGNGKRIAKVEDVVNVGDKIRVEIADIDNRGKISL-IVVKEEDAAKP 735


>gi|189184267|ref|YP_001938052.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
           str. Ikeda]
 gi|226702671|sp|B3CTX1|PNP_ORITI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189181038|dbj|BAG40818.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
           str. Ikeda]
          Length = 736

 Score =  693 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/697 (43%), Positives = 465/697 (66%), Gaps = 4/697 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    +++W G  L L TG+IAR +DGAVLA+ G T VL TVV+D++ K   DFFPL 
Sbjct: 1   MFNEILKKVDWHGNMLSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDIDFFPLG 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E  YA GKIPGG++++E + +E E+L+SR+IDRSIRPLF   ++N+TQVI  VM +
Sbjct: 61  VYYREMAYAAGKIPGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQVICTVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178
           D   SP +++++ +SAAL +SG+P   P+  A+V  +N +++LNP + ++ G   LDL V
Sbjct: 121 DPRYSPDILAIIGSSAALAISGIPIVKPIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D+V M+E +A ++ E+ +L AI FG+   KPVI AI ++     K+   + ++   
Sbjct: 181 AATFDSVTMIEAQACEIDEEKMLAAIEFGYKSLKPVINAIEEIKSSIRKDIFEVTARPHL 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-GEIVSVFED 297
           +  +E+ +    D++ +  +  K  R +Q+  +++K+V YFSSE +  +    I    +D
Sbjct: 241 RYNDEILKHFSSDIKSALLLQTKNERNQQLQLIQQKVVDYFSSEANDDDAILNIEKALDD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +++K+ R ++L  K R+  R  + +R I  + GL    HGS+LF RGDTQ++  +TLG+ 
Sbjct: 301 VKSKIFRDLVLQDKTRIGNRAIDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLGSS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ V+ L+  +R +F++ Y FLP + GE+S + A SRREIGHG LA++AI  V+P   
Sbjct: 361 TDEQIVEQLNKCERQNFLLDYIFLPYSVGEISPLRAASRREIGHGWLAKKAIQLVIPSKD 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDDFIIL 476
            FPYT+RIVSEIT+SDGSSSMATVC +SL+LM+AGVPI   VAGIAMGLV  +G+ F IL
Sbjct: 421 VFPYTIRIVSEITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGLVLGEGNKFEIL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDISG EDHLG MDFKVA T +GITA+Q+D+K+ GI+ +++    +QAK G  HILN M+
Sbjct: 481 SDISGCEDHLGDMDFKVASTKNGITALQLDIKVQGINLSMIESTFRQAKIGINHILNVMN 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             +S  + +L  + P V+ + I  ++IR+VIG+GGKVI+ + +    +++I ++G VK+ 
Sbjct: 541 NTISCPKSELSTYAPMVQTLEIQKEKIRDVIGLGGKVIKELCKTFDVEIDISENGEVKVW 600

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    ++ A + I +I  VP++  I+ G+VVKV++ GAF+ +   RDG VHIS+++   
Sbjct: 601 GNVGENVKKAVQSIENIVFVPQIGDIFDGEVVKVIESGAFIKYVTGRDGFVHISEINDTH 660

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +   +  VK GD V VK++  D + ++KL+++   ++
Sbjct: 661 IKDINAHVKLGDKVKVKIIGIDHKNRVKLTLRTDKEH 697


>gi|89256821|ref|YP_514183.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica LVS]
 gi|156502987|ref|YP_001429052.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009860|ref|ZP_02274791.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368103|ref|ZP_04984123.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290953517|ref|ZP_06558138.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313209|ref|ZP_06803868.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122500400|sp|Q2A269|PNP_FRATH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610265|sp|A7NDP3|PNP_FRATF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89144652|emb|CAJ79976.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|134253913|gb|EBA53007.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156253590|gb|ABU62096.1| putative polyribonucleotide nucleotidyltransferase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 693

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTYDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNTYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|254369705|ref|ZP_04985715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122664|gb|EDO66793.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 693

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTDDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYFIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNTYTIASKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 948

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/749 (37%), Positives = 438/749 (58%), Gaps = 60/749 (8%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I +  R + +ETG   RQ+ G+V+ T GET+V  TV  D    +  DFFPL+VNYQE
Sbjct: 92  SVKIPFGDRHILVETGHTGRQASGSVMVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQE 151

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 152 RFSAAGRTSGGFFKREGRAKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 211

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQDA 184
              +++ AA  A+ LS +P    + G +V  +  ++++NP   + ++  LDL ++GT  A
Sbjct: 212 SDALAVTAAGIAVALSEVPTTKAIAGVRVGLVGDKFIVNPTTKEMEESKLDLVMAGTDSA 271

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243
           +LM+E   N L E+ +L+A+  G +  + +   +  L K C K  +    K    +L + 
Sbjct: 272 ILMIEGYCNFLPEEKLLEAVQVGQDAVRAICNEVDALVKKCGKPKMHDAIKLPPPELYKH 331

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--------------------- 282
           + ++  ++L     I  K  R K +  L++K++S  + E                     
Sbjct: 332 VKEIAGDELVNVLQIRNKIPRRKALSSLEEKVISILTEEGFVSKDTSFGTTETVADLLEE 391

Query: 283 ---------HSSWNEGEI-------------------VSVFEDIQAKVVRTVMLDKKVRM 314
                        +EG+I                     VF+++ ++ +R  +++   R 
Sbjct: 392 EEEDEEFVVDGEVDEGDIHIKPVSRKSSPLLYSEVDVKLVFKEVTSQFLRRRIVEGGKRS 451

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-ND 373
           DGR+++ +R I+++ GLL R HGS+LF RG+TQ++ V TLG ++  Q VD+L        
Sbjct: 452 DGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEFKR 511

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y+F P + GEV RMGAPSRREIGHG LA RA+ P+LP  A FPYT+R+ S ITES+
Sbjct: 512 FYLQYSFPPSSVGEVGRMGAPSRREIGHGMLAERALEPILPSEADFPYTIRVESTITESN 571

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V D ++F      +ILSDI+G ED  G
Sbjct: 572 GSSSMASVCGGCLALQDAGVPVKCSIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDASG 631

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG + G+TA QMD+K+GGI+  +M  AL QA+ GR HIL EM K       +L 
Sbjct: 632 DMDFKVAGNEDGVTAFQMDIKVGGITLPVMRRALLQARDGRKHILAEMLKCSPSPSKRLS 691

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           +  P + +M + P ++  +IG GGK +R I+E+TG + ++ DDDGT+KI +  L+ +E +
Sbjct: 692 KHAPLIHMMKVDPQKVNMIIGSGGKKVRSIIEETGVEAIDTDDDGTIKITAKDLSSLEKS 751

Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           + +I ++T VP V  IY+   +K +  +G FV     R+GL HIS+L++  +AK  D  K
Sbjct: 752 KSIISNLTMVPTVGDIYRNCEIKTIAPYGVFVEIAPGREGLCHISELTSSWLAKAEDAFK 811

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            GD V VKL++ +++G++KLS K +    
Sbjct: 812 VGDRVDVKLIEVNEKGQLKLSRKALLPEP 840


>gi|148284082|ref|YP_001248172.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
           str. Boryong]
 gi|187610322|sp|A5CC62|PNP_ORITB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146739521|emb|CAM79228.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
           str. Boryong]
          Length = 740

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/701 (42%), Positives = 462/701 (65%), Gaps = 8/701 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    +++W G  L L TG+IAR +DGAVLA+ G T VL TVV+D++ K   DFFPL 
Sbjct: 1   MFNEILKKVDWHGNVLSLSTGKIARNADGAVLASMGNTSVLCTVVFDKNTKKDMDFFPLG 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E  YA GKIPGG++++E + +E E+L+SR+IDRSIRPLF   ++N+TQ+I  VM +
Sbjct: 61  VYYREMAYAAGKIPGGFIKKEGKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQIICTVMSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--SLDLFV 178
           D   SP +++++ +SAAL +SG+P   P+  A+V  +N +++LNP + ++ G   LDL V
Sbjct: 121 DPRYSPDILAIIGSSAALAISGIPIVKPIGAARVGIVNDEFILNPVIHDNTGVNELDLVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D+V M+E +A ++ E+ +L AI FG+   KPVI AI ++     K+   + ++   
Sbjct: 181 AATFDSVTMIEAQACEIDEEKMLAAIEFGYKSLKPVINAIEEIKSSIRKDIFEVTARPHL 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-----SSEHSSWNEGEIVS 293
           +  +E+ +    D++ +  +  K  R +Q+  +++K++ YF     S  +   +   I  
Sbjct: 241 RYNDEILKHFSSDIKSALLLQTKNERNQQLQLIQQKVIDYFSSKANSEANDGDDILNIEK 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +D ++K+ R ++L  K R+  R  + +R I  + GL    HGS+LF RGDTQ++  +T
Sbjct: 301 ALDDAKSKIFRDLVLQNKTRIGNRAVDEIRPIICEAGLFNTVHGSALFTRGDTQSLATIT 360

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG+  DEQ V+ L+  +R +F++ Y FLP + GE+S + A SRREIGHG LA++AI  V+
Sbjct: 361 LGSSTDEQIVEQLNKCERQNFLLDYIFLPYSVGEISPLRAASRREIGHGWLAKKAIQLVI 420

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-DGDD 472
           P    FPYT+RIVSEIT+SDGSSSMATVC +SL+LM+AGVPI   VAGIAMGLV  +G+ 
Sbjct: 421 PSKDVFPYTIRIVSEITQSDGSSSMATVCSASLSLMEAGVPIKTHVAGIAMGLVLGEGNK 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F ILSDISG EDHLG MDFKVA T +GITA+Q+D+K+ GI+ +++    +QAK G  HIL
Sbjct: 481 FEILSDISGCEDHLGDMDFKVASTKNGITALQLDIKVQGINLSMIESTFRQAKIGINHIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N M+  +S  + +L  + P V+ + I  ++IR+VIG+GGKVI+ + +    +++I ++G 
Sbjct: 541 NVMNNTISCPKSELSTYAPMVQTLEIQKEKIRDVIGLGGKVIKELCKTFDVEIDISENGE 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           VK+  +    ++ A + I +I  VP++  I+ G+VVKV++ GAF+ +   RDG VHIS++
Sbjct: 601 VKVWGNVGENVKKAVQSIENIVFVPQIGDIFDGEVVKVIESGAFIKYVTGRDGFVHISEI 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +   +   +  VK GD V VK++  D + ++KL+++   ++
Sbjct: 661 NDTHIKDINAHVKLGDKVKVKIIGIDHKNRVKLTLRTDKEH 701


>gi|317504248|ref|ZP_07962238.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
           15606]
 gi|315664618|gb|EFV04295.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
           15606]
          Length = 757

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/714 (40%), Positives = 421/714 (58%), Gaps = 25/714 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKSVQLPDGRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++  AASAA+  S +PFE  +   +V  ING++V++P   +     +DL V+
Sbjct: 121 DGVDQPDALAGFAASAAMACSDIPFEYAISEVRVARINGEFVIDPTFQQMADADMDLMVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E  ++SE  ++DA+       KP+ E   +L+K       V    D   
Sbjct: 181 ATKDNIMMVEGEMKEVSEQDLIDALKAASEAIKPMCELQEELSKELGTN--VKREYDHEI 238

Query: 240 LEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSY-------FSSEHSSWN 287
            +EE+ + IK +L    +       EK+ R    D +    +          S E     
Sbjct: 239 NDEELREQIKNELYQPVYDVNKQALEKHARHDAFDKILADFLEKYDAAHSDLSEEDLEEK 298

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             E    +ED+    +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T 
Sbjct: 299 HAEATRYYEDVMRDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETM 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++   TLGT+ DE+ VD +       F++HYNF P +TGE        RREIGHG LA R
Sbjct: 359 SLSTCTLGTKLDEKMVDDVMEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWR 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
            +   +P    +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+
Sbjct: 419 GLKGQIP--EDYPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLI 476

Query: 468 KD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+   D + ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK
Sbjct: 477 KNPGEDKYAILSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAK 536

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
            GR HILN M + +SE R +L    PR+E   IP + I  +IG GGK+I+ + E+TGA +
Sbjct: 537 AGREHILNCMLETISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEETGATI 596

Query: 586 NIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            ID+    G V +++ +   I+AA   I++I  VPEV ++Y+G V  +M +G FV     
Sbjct: 597 TIDEADGKGHVTVSAPNKESIDAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPG 656

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           +DGL+HIS++  +R+    +  +KEGD V VKL++ D + GK KLS +V+ +  
Sbjct: 657 KDGLLHISEIDWKRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVLLEKP 710


>gi|304383335|ref|ZP_07365801.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
           16973]
 gi|304335503|gb|EFM01767.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
           16973]
          Length = 780

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/715 (39%), Positives = 428/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  +    GR + +ETGR+A+Q+DG+V+   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVSLPDGRSISVETGRLAKQTDGSVVVRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +P++NEIL SR++DR +RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYAAAGRFPGGFTKREGKPSDNEILTSRLVDRVLRPLFPSNYHAEVFVNVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++  AASAA+  S +PF+  +   +V  +NG+YV+NP  ++  +  +D+ V 
Sbjct: 121 DGIDQPDALAGFAASAAMACSDIPFDFHISEVRVARVNGKYVVNPTSEQMKEADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E  ++SE  +++A+   H    P+ +   +L+K    +  V    D   
Sbjct: 181 ATKDNIMMVEGEMKEVSEQDLIEALKVAHQAIIPMCDVQEELSKELGTD--VKREYDHET 238

Query: 240 LEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
            +EE+   + +D    C+        +K  R +  D +K   +  + + H+  +E E+  
Sbjct: 239 NDEELRAQLHKDTYDKCYAIALAGDHDKKTRGEAFDKIKADFLETYDAAHTELSEDELEE 298

Query: 294 -------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
                   ++D+    +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHAMVDRYYDDVMRDSMRRCILDEGKRLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q++   TLGT+ DE+ +D +       F++HYNF P  TGE     +  RREIGHG LA 
Sbjct: 359 QSLTTCTLGTKLDEKMIDDVLDKSYQRFILHYNFPPFCTGEARPQRSVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   +P  A +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RGLKGQIP--ADYPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   D + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEDKYAVLSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEEALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HIL ++++ ++E R +L    PR+    IP + I  VIG GGK+I+ + E TG  
Sbjct: 537 KAGREHILGKITETIAEPRAELKPQVPRIVAFDIPKEFIGAVIGPGGKIIQQMQEDTGTT 596

Query: 585 VNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + ID+    G V++++     I+AA E I++I  +PE+ +IY+G V  +M +G FV    
Sbjct: 597 ITIDEIDGKGKVQVSAPDKESIDAALEKIKAIVAIPEIGEIYEGTVRSIMPYGCFVEIMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++   R+    D  +KEGD + VKL+D D + GK KLS +V+    
Sbjct: 657 GKDGLLHISEIDWRRLETVEDAGIKEGDKIRVKLMDIDPKTGKYKLSRRVLMDKP 711


>gi|300788163|ref|YP_003768454.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
           mediterranei U32]
 gi|299797677|gb|ADJ48052.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
           mediterranei U32]
          Length = 753

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/719 (40%), Positives = 431/719 (59%), Gaps = 36/719 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   E T++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 21  FGTRTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKDHFDFFPLTVDVEERMYA 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F+   +NE QV+I V   + +    V+
Sbjct: 81  AGRIPGAFFRREGRPSTDAILTCRLIDRPLRPSFTDGLRNEIQVVITVQSLNPDDPYDVL 140

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  ++GLPF GPV G +V  +  Q+V  P   + ++ + ++ V+G       A
Sbjct: 141 AINAASASTQIAGLPFSGPVGGVRVALVEDQWVAFPTWSQLEKATFNMVVAGRIVGDDVA 200

Query: 185 VLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKLAKMCAKE---- 228
           ++MVE E  + + D++          A+  G    KP I    EA  +LA + AK     
Sbjct: 201 IMMVEAEGTEHTLDLIAAGGKAPDEAAVAAGLEASKPFIKVLCEAQQQLADVAAKPTGEF 260

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSS 285
           P+ +  +    + + ++ +  +DL  +  IP K  R    D++K  ++        E   
Sbjct: 261 PVFLAYEQ--DVYDAVAAIATDDLARALQIPGKQDRDAATDEVKAAVLEKIGLGEGEAFE 318

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             + EI   F+ +  K++R  +L +K+RMDGR    +R +SA+V ++ R HGS+LF RG+
Sbjct: 319 GRDKEIGGAFKALTKKIMRQRVLTEKIRMDGRGLTDIRSLSAEVAVIPRAHGSALFERGE 378

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 379 TQILGVTTLNMLRLEQQIDSLSPETHKRYMHHYNFPPFSTGETGRVGSPKRREIGHGMLA 438

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP+  +FPY +R VSE   S+GS+SM +VC S++AL +AGVP+  PVAGIAMG
Sbjct: 439 ERALVPVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMALYNAGVPLKAPVAGIAMG 498

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    ++ L+DI G ED LG MDFKVAGT   ITA+Q+D K+ GI   ++  AL
Sbjct: 499 LVSDEVDGETRYVALTDILGAEDALGDMDFKVAGTKDIITALQLDTKLDGIPSEVLAAAL 558

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  RL IL  +++ +     ++  ++PRV  + IP D+I  VIG  GK+I  I EQT
Sbjct: 559 KQAKDARLTILEVIAEAIDSP-DEMSPYSPRVTSVKIPVDKIGEVIGPKGKMINSITEQT 617

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ + ++     EAA ++I +I    +P+V + + G VVK   FGAFV  
Sbjct: 618 GADISIEDDGTIYVGAADGPSAEAAIDLINAIANPQLPKVGERFLGTVVKTAAFGAFVSL 677

Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              +DGLVHIS+L   +R+AK  DVV  GD + V++ D D+RGKI L + V D    KP
Sbjct: 678 LPGKDGLVHISKLGNGKRIAKVEDVVNVGDKLRVEIADIDNRGKISL-IVVKDDEPAKP 735


>gi|115315207|ref|YP_763930.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|122324796|sp|Q0BKU1|PNP_FRATO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115130106|gb|ABI83293.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
          Length = 693

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/685 (45%), Positives = 464/685 (67%), Gaps = 8/685 (1%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            E   + + LETG +ARQ+DG+V  + G  VVL T V  +S+ DG DFFPL+V+Y E+TY
Sbjct: 8   FELGNKEIILETGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTY 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+LRRE RP+E +ILISR+IDRSIRP F   + NE Q++  V+ +D   SP +
Sbjct: 68  AAGKIPGGFLRREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVATVLSYDGAFSPDI 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
           ++++ ASA+L +SG P++  V G +V Y NG+Y+LNP   + +   LDL VSGT DA+LM
Sbjct: 128 LALIGASASLAISGAPYDDVVAGVRVGYTNGKYILNPNKQDLRDSDLDLVVSGTYDAILM 187

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           VE EAN L E V+L  I++ H   K +I +I++LAK+ +K  I       +K L+ ++  
Sbjct: 188 VESEANSLPESVMLGGILYAHKHLKTIINSINRLAKVASKPRIEYSIYQINKFLKSQIKS 247

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVFEDIQAKVV 303
               +++ +  I  K  R  +++ ++K ++ Y  S   + + + E EI+  F DI+  +V
Sbjct: 248 QFFGEIKNTYTIALKQERNLKLNAIRKNVLEYIFSSDVDGNEYTEKEILEAFHDIEKDLV 307

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +L+ K R+DGR +ET+R I+ ++G+L   HGS+LF RG+TQA+VV TLG+  D Q V
Sbjct: 308 RSNILEGKPRIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLV 367

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +SL G ++  +M+HYNF P + GE   +G AP RREIGH  LA+RA   V P    +PY 
Sbjct: 368 ESLDGIEKCRYMLHYNFPPYSVGECGMVGMAPKRREIGHANLAKRATQAVFPNEEAYPYV 427

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVCGSSL++MDAGVPI++PVAGIAMGL+KDG  + +LSDI GD
Sbjct: 428 VRVVSEILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAVLSDILGD 487

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+TA+QMD+KI GIS  I+  AL+QA+ GRLHIL  M++V+ E 
Sbjct: 488 EDHLGDMDFKVAGTRYGVTALQMDIKIKGISREILEQALEQARVGRLHILGIMNEVIKEH 547

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           +  + +  P++ +M I P +I++V+G GG  ++GIVE+TGA+++  D G VK+ +     
Sbjct: 548 KEAVSDVAPQIHVMNINPAKIKDVVGRGGATVKGIVEKTGAQIDTSDSGEVKVFAKDKKS 607

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ A  MI  I    E  ++YKG++VK++D G FV+  G++DG +  S++  E+    ++
Sbjct: 608 MDMAVAMIEEIVAEVEEGQVYKGKIVKLLDSGVFVNLLGSQDGYLPFSEI--EQAGMKTN 665

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            + EG  + V + + D  G++KLS+
Sbjct: 666 SLVEGQGLEVLVQNIDRGGRVKLSL 690


>gi|317487420|ref|ZP_07946208.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
           3_1_6]
 gi|316921352|gb|EFV42650.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
           3_1_6]
          Length = 745

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/695 (44%), Positives = 439/695 (63%), Gaps = 11/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              V     G+ + LETGR+A Q+ G+V    G TVVL TV   + L   + FFPLTV Y
Sbjct: 7   PTRVSATIGGKEIILETGRVATQAHGSVTIQCGGTVVLVTVC-SQPLDFDRGFFPLTVEY 65

Query: 64  QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
            ER YA G+IPG + RRE  RP+E E L+SR+IDR IRPLF K    + QV+ +V+  D 
Sbjct: 66  SERMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLPEDVQVLASVISSDQ 125

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           E+   V+S+ AASAA+MLS LPF   V G ++  INGQ++LNP + E  +  L++  + +
Sbjct: 126 ENESDVLSITAASAAVMLSPLPFAEAVAGGRIGRINGQFILNPTVKEMAESDLNIVFAAS 185

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKL 240
            DA++MVE EA  + EDV++DA+ +G  E +P++EA  KL ++  K  +     +D + L
Sbjct: 186 ADALVMVEGEATFVPEDVIIDALEWGRKEIQPLVEAQVKLRELAGKAKMAFTPQEDDAAL 245

Query: 241 EEEMSQMIKEDLRVS-CFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVF 295
              + ++       +   +PEK  R      +K+K+V    ++            +  + 
Sbjct: 246 LARIEELAAGAGLEAAMRVPEKMARKDARKLVKEKIVEALKADPTYGEDEKALSSVGDII 305

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+ KVVR  +LD+  R+DGRD++TVR I  Q G+L R HGS+LF RG+TQ++ V TLG
Sbjct: 306 GHIEKKVVRKRILDEGTRIDGRDTKTVRPIEIQPGILPRAHGSALFTRGETQSLCVTTLG 365

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  D Q +DSL+G     FM+HYNF P + GEV  +   SRREIGHG LA +A+ P++P 
Sbjct: 366 SSTDNQRMDSLTGDVTKTFMLHYNFPPFSVGEVKPV-RVSRREIGHGALAEKALKPIIPA 424

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FP+T+R+V+E  ES+GSSSMA VCG  L+LMDAGVPIS PVAG+AMGL+K+GD+FI+
Sbjct: 425 GDGFPFTVRVVAETLESNGSSSMAAVCGGCLSLMDAGVPISDPVAGVAMGLIKEGDNFIV 484

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED LG MDFK+AGT  G+TA+QMD+KI G++  IM  A++QA   RLHIL EM
Sbjct: 485 LTDILGDEDALGDMDFKIAGTAEGVTAVQMDIKITGLTTEIMRKAMRQAHEARLHILGEM 544

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            K +   R +L ++ P+   + + P+ IR +IG GGK I+ I   TGA V+I+D G + I
Sbjct: 545 KKAIDGPRAELSKYAPQHAEVFVNPEVIRMIIGPGGKNIKAITAATGASVDIEDSGRISI 604

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +   +E A+E+++     P++ K Y G+V KV++ GA V      + LVHISQL T 
Sbjct: 605 FAPTAESMEQAKELVQYYDQRPDLGKNYMGKVRKVLEIGAIVEIMPNVEALVHISQLDTS 664

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RVA+ SDV   G+ + VK+++ +   +I+ S K V
Sbjct: 665 RVAQASDVAHLGEDMLVKVIEINGD-RIRASRKAV 698


>gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
 gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
          Length = 712

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/707 (42%), Positives = 434/707 (61%), Gaps = 13/707 (1%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           ++ T  I+   GR + +ETG +A+Q+DG+V+   G+ ++LATVV  +   +G DF P++V
Sbjct: 4   NLITKSIKLEDGREIIIETGALAKQADGSVVVKMGKAMLLATVVSKKEAGEGVDFLPMSV 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + GKIPGG+L+RE R ++ EILISR++DR+IRP+F   Y  +TQ+ I ++  D
Sbjct: 64  DYQEKFASTGKIPGGFLKREGRLSDYEILISRIVDRAIRPIFPDDYHADTQIAITLVSGD 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            E  P  ++ +AASAAL +S +PF GP+   +V  I+G+  +NP   E ++ SL+  V+G
Sbjct: 124 DEVLPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKLKINPTPTELEKASLEFIVAG 183

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVIDSKDFS 238
           + D +LMVE EA+++ E+ +L+A+ F H E K   +A  +L K+  KE        K   
Sbjct: 184 SLDFILMVEGEADEIQEEEMLEAMQFAHEEIKRHCQAQIELTKLVGKEVKREYTHEKSDP 243

Query: 239 KLEEEMSQMIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
            L ++M   + + L  S    I  K  R   I ++K + V     EH  +    I   F 
Sbjct: 244 ALFDKMKAEVYDKLYASVSKQIANKSERSALIKEIKDEFVESLGEEH-EYEASLIGPYFS 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I  +  R + LD+K R+DGR    VR I + V  L   HGS++F RG+TQ++   TLGT
Sbjct: 303 KIHKEAARNLTLDEKKRLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGT 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           + DE  VD  + +  N F +HYNF   +TGEV     P RRE+GHG LA RA+  VLP  
Sbjct: 363 KMDEMMVDGATISGYNKFYLHYNFPGFSTGEVKPNRGPGRREVGHGNLAMRALKKVLPPA 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFI 474
            + PYT+RIVS+I ES+GSSSMATVC  SLA+MDAG+ I   V GIAMG++ D     + 
Sbjct: 423 EENPYTIRIVSDILESNGSSSMATVCAGSLAMMDAGIQIKSAVTGIAMGMISDANTGKYS 482

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+  +++  AL QAK GRLHIL+E
Sbjct: 483 ILSDILGDEDHLGDMDFKVTGTSQGITACQMDLKVEGLDYSVLKEALLQAKEGRLHILDE 542

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DG 591
           ++K L+  + +L   TPR  +M IP + I  VIG GGKVI+ I + T   + I++    G
Sbjct: 543 ITKTLAAPKTELKPHTPRSFMMMIPKELIGAVIGPGGKVIQEIQKDTSTTIVIEEVDNQG 602

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + + S++   ++AA   I++I   PE+ + Y G+V  +  FGAFV F   +DGL+HIS+
Sbjct: 603 KISVFSANQDNMDAAISRIKAIVAQPEIGETYTGKVKNIQPFGAFVEFMPGKDGLLHISE 662

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           +  ERV     V++ G+ + VKL+D D + GK KLS K +     KP
Sbjct: 663 IKWERVESMDGVLEPGEEIMVKLIDIDKKTGKFKLSRKALLPKPEKP 709


>gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 997

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/707 (39%), Positives = 411/707 (58%), Gaps = 14/707 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E   R +  ETG+IAR ++GAV+ +  ET VL+TV         +DF PLTV+
Sbjct: 56  ETFKEEFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTV-ASSKGDAARDFLPLTVD 114

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ +A G IP  ++RRE  P E E+L  R+IDR IRPLF   + +E QV+ +V+  D 
Sbjct: 115 YQEKHFAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDG 174

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P V++  A SAALMLS +P+ GP+   ++  I GQ+++NP +DE     L+L  + T
Sbjct: 175 KQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACT 234

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +D  LM++++A ++SE  +  A+   H E    +E   +LA    K          S + 
Sbjct: 235 RDKTLMIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDIT 294

Query: 242 EEMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            E  + + E    + F      K+ R + +D + + +      E    +   +  V + +
Sbjct: 295 FEKVRNLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTV 354

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +VVR  ++ + +R+DGR    VR +  + G L   HGSSLF RGDTQ +  VTLG   
Sbjct: 355 RKEVVRRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPG 414

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +DSL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP   +
Sbjct: 415 DAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEE 474

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------- 471
           FPYT+RI SE+  SDGS+SMATVCG S+ALMDAG+P+ + VAGI++GLV + D       
Sbjct: 475 FPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIK 534

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+ IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+   L+ A RGRL I
Sbjct: 535 DYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQI 594

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M + ++  R Q    +PR+  +    D +R ++G  G + R I E+TGA++++ D G
Sbjct: 595 LDRMEQEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVSD-G 653

Query: 592 TVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           T+ + + + + ++  +E +  I     E+  IYKG V  V ++GAFV F G + GL+HIS
Sbjct: 654 TLTVVAKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHIS 713

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +LS E V + SDVV  G  + +  +  D RG IKLS+K      G  
Sbjct: 714 ELSHEPVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLPRPGSD 760


>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 948

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/755 (37%), Positives = 445/755 (58%), Gaps = 60/755 (7%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+
Sbjct: 112 NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVH 171

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQER  AVG+  GG+ +RE R  ++E+LI R+IDR +RP   K + NETQ++  V+ +D 
Sbjct: 172 YQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDG 231

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
             +P  +++ +A  A+ LS +P    + G +V  I G++++NP + E ++  LDLF++GT
Sbjct: 232 LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGT 291

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             A+L +E  +N L E+++L A+  G +  +    AI  LAK   K  ++   +    +L
Sbjct: 292 DTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRLPPPEL 351

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------------- 285
            + + ++  E+L  +  I  K  R K I  L++K+++  + +                  
Sbjct: 352 YKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPDL 411

Query: 286 ----------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKK 311
                                             ++E ++  VF+++ +K++R  +++  
Sbjct: 412 LEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEGG 471

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G+  
Sbjct: 472 KRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDE 531

Query: 372 -NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              F + Y F P + GEV R+GAPSRREIGHG LA RA+  +LP    FPYT+R+ S + 
Sbjct: 532 YKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVI 591

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDED 484
           ES+GSSSMA+VCG  LAL DAGVP+   VAGIAMG+V D ++F      +ILSDI+G ED
Sbjct: 592 ESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAED 651

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G MDFKVAG + G+TA QMD+K+GGI+  IM  AL QAK GR HIL EM+K      L
Sbjct: 652 ASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPTL 711

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEI 603
            L ++ P + IM + P ++ ++IG GGK ++ I+E++G + +++ DDGTVKI +  +A +
Sbjct: 712 SLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDVASL 771

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E A+ +I  +T VP V  IY+   +K +  +GAFV     R+GL HIS+LS E +AK  D
Sbjct: 772 ERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPED 831

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             K GD + VKL++ +++G+++LS++ +   +   
Sbjct: 832 AYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETD 866


>gi|72161188|ref|YP_288845.1| polynucleotide phosphorylase/polyadenylase [Thermobifida fusca YX]
 gi|123629954|sp|Q47RU5|PNP_THEFY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71914920|gb|AAZ54822.1| polyribonucleotide nucleotidyltransferase [Thermobifida fusca YX]
          Length = 767

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/704 (38%), Positives = 413/704 (58%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+  A   + T+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 16  FGTRTIRFETGRLARQATGSATAYLDDETMVLSATTVSKRPKEALDFFPLTVDVEERMYA 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  V+    +    V+
Sbjct: 76  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFQKGLRNEIQIVATVLALHPDHLYDVI 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  + GQ+V  P   E    + D+ V+G        
Sbjct: 136 AINAASMSTQLAGLPFSGPIGGVRVALVEGQWVAFPTHSELANATFDMVVAGRVLDNGDV 195

Query: 184 AVLMVELEANQLS------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-- 229
           A++MVE E+   +            E  V + +       K +  A   +A+   K P  
Sbjct: 196 AIMMVEAESTPHTLRLVAEGAIGPNEQTVAEGLEAAKPFIKVLCRAQQTVAEAAGKPPGE 255

Query: 230 --IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
             I ID +D +     + + I ++L  +  I +K  R  ++D +K  +    + +     
Sbjct: 256 YPIFIDYQDDAY--AAVEEAIHDELAAALTIADKQEREAELDRVKALVAEKLAEDFEG-R 312

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ + F  +  K+VR  ++   VR+DGR  + +R ++A+V ++ R HGS+LF RG+TQ
Sbjct: 313 EKELAAAFRALTRKLVRERIVKDGVRIDGRGVKDIRSLTAEVNVIPRVHGSALFERGETQ 372

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + + TL     EQ +D+L+  +   +M +YNF P +TGE  R+GAP RREIGHG LA R
Sbjct: 373 ILGITTLNMLRMEQTIDTLNPERTKRYMHNYNFPPYSTGETGRVGAPKRREIGHGALAER 432

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++LM AGVP+   VAGIAMGL+
Sbjct: 433 ALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLMAAGVPLKDMVAGIAMGLI 492

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            +   ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  ALQQA+  
Sbjct: 493 YEDGKYVTLTDILGAEDAYGDMDFKVAGTRDLITALQLDTKLDGIPAEVLASALQQARGA 552

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RL IL+ MS+ ++    ++    PR+  + +P D+I  VIG  GK+I  I ++TGA++ I
Sbjct: 553 RLAILDVMSEAINRP-AEISPHAPRILTVKVPIDKIGEVIGPKGKMINSIQDETGAEITI 611

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +DDGT+ I ++     EAAR+ I SI +  +PEV + Y G VVK   FGAFV     +DG
Sbjct: 612 EDDGTIYIGATDGPSAEAARDAINSIANPTMPEVGERYLGTVVKTTAFGAFVSLLPGKDG 671

Query: 646 LVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           L+HISQ+      +R+    DV+  G+ + V++ D D+RGK+ L
Sbjct: 672 LLHISQIRKMHGGQRIENVEDVISIGEKIHVEVRDIDERGKLSL 715


>gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
 gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
          Length = 669

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/662 (41%), Positives = 410/662 (61%), Gaps = 9/662 (1%)

Query: 41  LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100
           + T V    LK+ QDF PL V Y+E+  A G+ PGGY R+E RPT+ EIL SRMIDR +R
Sbjct: 1   MVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLR 60

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF K Y  ETQ++  ++  D ++ P V+++  ASAALM+S +PF GPV   ++  I+G+
Sbjct: 61  PLFPKGYFYETQILGTLLSADGQNDPDVMAINGASAALMVSDIPFYGPVGAVRIGQIDGR 120

Query: 161 YVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +++NP   E +   +DL   G++   LM+E  A +  E+  + A+ F H   + VI A  
Sbjct: 121 WIINPTHREREISDIDLVYVGSEHYPLMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQK 180

Query: 220 KLAKMCAKEPIV-IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
           +LA+   K     +  ++   +   ++++    L+ + +   K  R K++  LK+++ + 
Sbjct: 181 ELAEKVGKPKRSCVLFEENLAITNRLAELYSSQLQDALYTSSKTERQKKLAKLKEELTAK 240

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
              E  +    EI S ++ +Q  + RT +L+ K R DGR  E +R I+ +  ++ R+HGS
Sbjct: 241 ILEEFPTATPREITSSYDSLQKTIFRTNVLETKRRCDGRGPEDIRPIAIETSVVPRSHGS 300

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           SLF RG+TQA+ + TL +  + Q +D+   G Q   F++HY F P + GEV R+   SRR
Sbjct: 301 SLFCRGETQALCMATLASLNEAQELDAYGGGEQSKRFLLHYFFPPFSVGEVGRITGQSRR 360

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA R++ PV+P    FPY +R+ SEI ES+GS+SMATVCG SLALMDAGVP+  
Sbjct: 361 EIGHGALAERSLLPVIPSETDFPYAIRVSSEILESNGSTSMATVCGGSLALMDAGVPLKT 420

Query: 458 PVAGIAMGLVK------DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
            VAGI++GLVK      D   + +L+DI G EDH G MDFK+AGT  GIT  Q+D+K+ G
Sbjct: 421 SVAGISVGLVKGKEEDFDWSRYCLLTDILGLEDHYGDMDFKIAGTRKGITGFQLDLKLRG 480

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  ++M  A+ Q+++ R+ IL+ M KV++  R ++ +  PR+E + I PD+I  +IG GG
Sbjct: 481 IPLDVMAKAIFQSQKARMVILDCMDKVINAPRAEISKHAPRIEKIKIHPDKIGLLIGPGG 540

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           K I+ I  ++GA++ I+DDGTV I SSS   +EAAREMI  +     V  IY+ +VV V 
Sbjct: 541 KTIKKISAESGAEITIEDDGTVMIYSSSADSLEAAREMIEDMVGEVTVGGIYRSKVVSVK 600

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           DFG F+   G  +GLVHIS+LS   V +   VV+ G+ +WVK +  D++G+ K S K   
Sbjct: 601 DFGCFIEIKGKGEGLVHISELSDTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKAAM 660

Query: 692 QN 693
           + 
Sbjct: 661 KE 662


>gi|157364256|ref|YP_001471023.1| polynucleotide phosphorylase/polyadenylase [Thermotoga lettingae
           TMO]
 gi|187611328|sp|A8F725|PNP_THELT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157314860|gb|ABV33959.1| Polyribonucleotide nucleotidyltransferase [Thermotoga lettingae
           TMO]
          Length = 710

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/692 (42%), Positives = 436/692 (63%), Gaps = 17/692 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           + T + E  GR   +E G++A+Q++GAV+A  G+T VLAT V   S  +G DF PLTV +
Sbjct: 1   MKTWKREILGREFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSAVEGIDFVPLTVEF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER YA GKIPGG+++RE +P+E  IL +R IDR IRPLF K  +NE QV++ V+  D  
Sbjct: 61  QERFYAAGKIPGGFIKREGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSV 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQ 182
           ++P +V + AAS AL +S +PF G V   +V  ++G+ VL P  D+ Q SL D+ V+GT+
Sbjct: 121 NTPDIVGVFAASLALNISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDIVVAGTE 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLE 241
           D + MVE EA ++SE  +L A++  H+  K +I+   ++      E   I  K    ++E
Sbjct: 181 DTITMVEGEAKEVSESQMLQALLKAHDAIKQIIDFEKEILSYFNIEKAQIAEKTLPEEIE 240

Query: 242 EEMSQMI-KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED--- 297
           +E SQ++   +LR    I  K  R   + +  KK+     + + +    E+  + +D   
Sbjct: 241 KEFSQLLDGNELRERLLIQGKKARSNALSEYFKKIYEILEARYGTEKIEELSVLLKDKYE 300

Query: 298 -IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
                 +R +++++  R+D R  + +R I+ + GLL R HGS+LF RG+TQ++ +VTLG 
Sbjct: 301 EALKYKMRRIIVEEGTRLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGA 360

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             DEQ +DSL       FM+HYNF P +TGEV  +  PSRREIGHG LA RA+  VLP  
Sbjct: 361 PMDEQIIDSLLEEGTKRFMLHYNFPPFSTGEVKPLRGPSRREIGHGHLAERALKFVLPDE 420

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPYT+RIVSEI ES+GSSSMATVC  SLALMDAGVPISK VAG+AMGL+ + D  I+L
Sbjct: 421 DRFPYTIRIVSEILESNGSSSMATVCSGSLALMDAGVPISKHVAGVAMGLILEKDSQIVL 480

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA QMD K+ G+S +++  AL QAK  RL++L ++ 
Sbjct: 481 TDILGAEDHWGDMDFKVAGTRDGITAFQMDCKVSGVSADLLERALNQAKEARLYVLEKLY 540

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-DGTVKI 595
           + +S+ R  L ++ P +++++I P ++  +IG GGK+I+ +++    K+++DD  G V +
Sbjct: 541 ETISKPRDTLSKYAPVIKVISIDPSKVAEIIGPGGKIIKALIKDYDVKISVDDLTGKVSV 600

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
              +  +++AA E I SI     V  ++ G+V ++  FG FV     + GL+H S+L   
Sbjct: 601 IGGNEEKVDAAIEQINSILKEISVGDVFSGKVTRIEPFGVFVEISPGKVGLLHQSKL--- 657

Query: 656 RVAKTSDV--VKEGDTVWVKLLDFDDRGKIKL 685
                +D+  VK G+T+ VK+ + D+ G+++L
Sbjct: 658 ----ITDLKTVKIGETMRVKVSNIDNLGRLQL 685


>gi|302335751|ref|YP_003800958.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
 gi|301319591|gb|ADK68078.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
          Length = 743

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/703 (40%), Positives = 426/703 (60%), Gaps = 12/703 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E +  G+   LETG +A+Q+ G  L + GE+ V  TVV  +  K   DFFPLTV++
Sbjct: 3   KVTHEFDLFGKHYTLETGELAKQATGECLVSCGESTVNVTVVVSKERK-NYDFFPLTVDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVG+IPGGYL+RE+RP+E   L +R+IDR IRP F + ++NE Q++   +  D  
Sbjct: 62  VEKMYAVGRIPGGYLKREARPSEKATLTARLIDRPIRPSFPEGFRNEVQIVAMPLVADQV 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDE-DQGSLDLFVSG 180
           +    +S++ ASAA+ + G+PFEGP+   +V      G++++NP  +E D   LDL ++G
Sbjct: 122 NPVDTISVMGASAAMTVGGVPFEGPLACVRVGRDVETGEFIVNPSYEERDASDLDLELAG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
           +   + M+E  A ++SED +L A+ FG        E          +    I ++++   
Sbjct: 182 SATFISMLEAGAKEVSEDDMLAAMAFGQEAIAAFCEEQRVFFAKVEQANGSIVAREYVLD 241

Query: 238 ---SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
               ++ E +     +++R +    +K  R  +++ LK+ + + FS +     +  I   
Sbjct: 242 EPVPEVHERVFAHF-DEMRAALTDADKLARMGKVEALKEAIRAEFSEDEQLQWDRAIPVE 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            + ++   +R ++++   R+DGR +  VR +  +   L R HGS LF RG TQ + + TL
Sbjct: 301 LKSLEKHAMRRMVVECGERVDGRSATEVRPLMVKPDYLPRVHGSGLFQRGQTQVLSIATL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   + Q +D++       ++ HYNF P  TGE  RMGAP RREIGHG LA RA+ PV+P
Sbjct: 361 GMLNEWQRLDTIEPVDGKRYIHHYNFPPFCTGETGRMGAPKRREIGHGSLAERALLPVIP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVP+++PV+G+AMGL+++    +
Sbjct: 421 SEDEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPLARPVSGVAMGLIQEEGKTV 480

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  AL QA  GR+HIL  
Sbjct: 481 VLTDIQGLEDFLGDMDFKVCGTVKGITAMQMDNKATGLTPEILRQALMQAHEGRMHILEA 540

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +   R    E  P++  + IP D+IR+VIG GGKVIRGI + TGA ++I +DGTV 
Sbjct: 541 MLEQIPAPRESTKESAPQIISIQIPTDKIRDVIGSGGKVIRGIQDDTGATIDIQEDGTVF 600

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IA +  A  EA+ E I++I  VPE  + Y G+VV +  FGAFV     +DGL+HIS+++ 
Sbjct: 601 IAGTGGAAGEAS-ERIKAIVKVPEAGEEYTGRVVGIQPFGAFVELLPGKDGLLHISRVAQ 659

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            RV K  DV+  GD V V++++ D++GKI L      +    P
Sbjct: 660 GRVDKVEDVLSIGDEVKVRVIEVDEKGKISLDRLDKPEAPAVP 702


>gi|300727487|ref|ZP_07060878.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
 gi|299775190|gb|EFI71791.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
          Length = 739

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/703 (40%), Positives = 422/703 (60%), Gaps = 24/703 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DG+ +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRTITIETGKVAKQADGSAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE + ++ E+L SR++DR++RPLF   Y  E  V + ++  D    P  ++ 
Sbjct: 63  RFPGGFTKREGKASDEEVLTSRLVDRALRPLFPSDYHCEVYVQVMLLSADGVDQPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
            AASAA+  S +PF+  +   +V  ING++V+NP   + ++  +DL V  T+D ++MVE 
Sbjct: 123 FAASAAMACSDIPFDYTISEVRVARINGEFVINPTFQQMEEADMDLMVGATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E  ++SE  +++A+   H   KP+ +   +LAK    +  V    D    +EE+ Q IK+
Sbjct: 183 EMKEVSELDLINALKAAHEAIKPMCDLQDELAKELGTD--VKREYDDEINDEELRQQIKD 240

Query: 251 DLRVSCFIPE-----KYVRCKQIDDLKKKMVSY-------FSSEHSSWNEGEIVSVFEDI 298
           +L    +        K  R    D L    +          S++       E    ++D+
Sbjct: 241 ELYQPAYDINHKALPKQERNDSFDKLLADFLEKYDAAHEDLSADDLEEKHAEAKRYYDDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+ +R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT+ 
Sbjct: 301 LRDAMRRCILDEGLRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKM 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +       F++HYNF P +TGE        RREIGHG LA RA+   +P  A 
Sbjct: 361 DEKLVDGVLNRSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKDQIP--AD 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIIL 476
           +PYT+R+VS++ ES+GSSSMAT C  +LALMDAGVPI KPV+GIAMGL+K+   D + IL
Sbjct: 419 YPYTVRLVSQVLESNGSSSMATTCAGTLALMDAGVPIKKPVSGIAMGLIKNPGEDKYAIL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILNEM 
Sbjct: 479 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNEMM 538

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593
           K +SE R +L    PR+E+  IP + I  VIG GGK+I+ + E+TGA + I++    G V
Sbjct: 539 KTISEPRAELKPQVPRIEVFDIPKEFIGAVIGPGGKIIQQMQEETGATITIEETEGKGHV 598

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++++ +   I+AA   IR+I  VPEV ++Y+G V  +M +G FV     +DGL+HIS++ 
Sbjct: 599 QVSAPNKESIDAALLKIRAIVAVPEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEID 658

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +R+    +  +KEGD + VKL++ D + GK KLS + + +  
Sbjct: 659 WKRLETVEEAGLKEGDKIQVKLMEIDPKTGKYKLSRRALLEKP 701


>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
 gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
          Length = 877

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/742 (38%), Positives = 436/742 (58%), Gaps = 51/742 (6%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             +V I    R + +ETG I RQ+  +V+ T GET++  +V    +  D  DFFPL+V+Y
Sbjct: 73  KFSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPADFFPLSVHY 132

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  A G+  GG+ +RE +  ++E+L+ R+IDR +RP   K +  ETQ++  V  +D  
Sbjct: 133 QERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGI 192

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP  +++ AA  A+ LS +P +  + G ++  I+ Q+V+NP  ++ +   LDL ++GT 
Sbjct: 193 HSPDCLAITAAGIAVALSEIPNKQTIAGVRIGLIDDQFVVNPTTEQMENSELDLMMAGTD 252

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
            A+LM+E   + L+E+ +L+A+  G    + + +AI  L + C K+ +V   S    +L 
Sbjct: 253 SAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQSCGKKKMVDAISLPPPELY 312

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------------------ 283
             +  +  ++L  +  I  K  R K +  L+ K++S  S +                   
Sbjct: 313 RHVEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGYVSKDASSGVTESLADIV 372

Query: 284 ----------------------SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSET 321
                                   + E ++  VF+++ +K +R  +++   R DGR    
Sbjct: 373 EDEDEDEIIVDGEVDEGDFPIKPLFAEVDVKLVFKEVSSKYLRRRIVEGGRRSDGRSPWE 432

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNF 380
           +R I++Q GLL R HGS+LF RG+TQ++ VVTLG  +  Q +D+L        F + Y+F
Sbjct: 433 LRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDSKSFYLQYSF 492

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P   GEV R+GAPSRREIGHG LA RA+ P+LP    FPYT+R+ S ITES+GSSSMA+
Sbjct: 493 PPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGSSSMAS 552

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKVA 494
           VCG  LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED  G MD K+A
Sbjct: 553 VCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLILSDITGAEDASGDMDLKIA 612

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           G +SGI+A QMD+K+ GI+  +M  AL QA+ GR HILNEMSK        L  + P + 
Sbjct: 613 GNESGISAFQMDIKVVGITLPVMEQALFQARDGRQHILNEMSKSSPPPSKALSPYAPLIH 672

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSI 613
           +M + P+++  +IG GGK I+ I+E+TG   ++  DDGTVKI +  L+ +E ++ +I ++
Sbjct: 673 VMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEKSKTIIANL 732

Query: 614 TDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           T VP+V +IY+   +K +  +GAFV     R+GL HIS+LS+  +AK  D  K GD + V
Sbjct: 733 TMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSGWLAKAEDAFKVGDRIDV 792

Query: 673 KLLDFDDRGKIKLSMKVVDQNT 694
           KL++ +D+G+++LS + +  + 
Sbjct: 793 KLIEINDKGQLRLSSRALLPDA 814


>gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Mississippi]
 gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Virginia]
          Length = 805

 Score =  690 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/703 (47%), Positives = 468/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDED-QGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    K+ +     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF----SSEHSSWNEGEIV 292
             K+  ++S    E   V+     K  R  Q+D  ++ + S        E   + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++  D +  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGID-KDHVQLSMRRVDQDSG 701


>gi|225551703|ref|ZP_03772647.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
 gi|225371730|gb|EEH01156.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
          Length = 722

 Score =  690 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/716 (40%), Positives = 445/716 (62%), Gaps = 35/716 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF P +V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPFSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKL 240
            + MVE  AN++SED++L AI   H   K +  A  +   +  K+   P+  + K F + 
Sbjct: 183 GITMVEGGANEVSEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298
           ++E+   +  DL+ +CF+  K  R K I  L+ K   +FS   + +  NE      F+D 
Sbjct: 242 KDELRDFVYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNEFLFHKAFDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EKEIVRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    
Sbjct: 362 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKND 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++ G KV I+ +G + +   
Sbjct: 541 ISNSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFGVKVQIEQNGKIILFGD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQL 652
              +++ A+E I SI   P+V +IY+G V K+  FGAF+    A++G +        S+ 
Sbjct: 601 DDFKMQKAKERIESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKY 660

Query: 653 STERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
            + R   ++                       ++EG  + VK++D D  GKI L +
Sbjct: 661 GSGRFGNSNRYFRFGGGGESIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|269127530|ref|YP_003300900.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermomonospora curvata DSM
           43183]
 gi|268312488|gb|ACY98862.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermomonospora curvata DSM
           43183]
          Length = 775

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/704 (39%), Positives = 420/704 (59%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+ARQ+ G+ +    E T+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 21  FGTRTLRFETGRLARQAAGSAVVYLDEETMVLSATTVSKKPKETLDFFPLTVDVEERMYA 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE Q++  V+    E    VV
Sbjct: 81  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQIVETVLALHPEHLYDVV 140

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS + +LSG+PF GP+ G +V  I+GQ+V  P   E +  + D+ V+G        
Sbjct: 141 AINAASMSTLLSGVPFSGPIGGVRVALIDGQWVAFPTHSELERATFDMVVAGRTLDNGDV 200

Query: 184 AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE E+               +E+ V + +       K + +A  +LA + AKE   
Sbjct: 201 AIMMVEAESTRDTLKLVAEGAPAPTEERVAEGLEASKPFIKILCDAQRELAAVAAKETIE 260

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D  D   + E +S  + EDL  +  I  K  R  ++++L+   +     +    +
Sbjct: 261 FPLFLDYTD--DVLEAVSATVSEDLAQALTIVGKQEREAKLEELRAATIEKLLPDFEGRD 318

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             E+ + F  +  K++R  ++   VR+DGR  + +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 319 -KELAAAFRAVTKKLIRERIVRDGVRIDGRGVKDLRQLSAEVHVVPRVHGSALFERGETQ 377

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS  +   +M HYNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 378 ILGVTTLNMLRMEQTIDTLSPERTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAER 437

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+   VAGIAMGL+
Sbjct: 438 ALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKDMVAGIAMGLI 497

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            +  +++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  AL+QAK  
Sbjct: 498 YENGEYVTLTDILGAEDAFGDMDFKVAGTRDLITALQLDTKLDGIPAEVLAAALKQAKAA 557

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RL IL+ M++ +SE   +L  + PR+  + +P D+I  VIG  GK+I  I + TGA + I
Sbjct: 558 RLAILDVMAEAISEP-AELSPYAPRIITIKVPVDKIGEVIGPKGKMINSIQDDTGADITI 616

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +DDGT+ + +      EAAR+ I +I    +PEV + Y G VVKV  FGAFV     +DG
Sbjct: 617 EDDGTIYVGALDGPSAEAARQAINAIANPHMPEVGERYLGTVVKVTTFGAFVSLLPGKDG 676

Query: 646 LVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           L+H+SQ+       R+    D +K G+ V V++ + D RGK+ L
Sbjct: 677 LLHVSQIRKLHGGARIDNVEDYLKVGEKVQVEVTEIDPRGKLSL 720


>gi|281422610|ref|ZP_06253609.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
           18205]
 gi|281403280|gb|EFB33960.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
           18205]
          Length = 772

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/714 (39%), Positives = 421/714 (58%), Gaps = 25/714 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKSVQLPDGRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE + ++ EIL SR++DR++RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKASDEEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P  ++  AASAA+  S +PFE  +   +V  ING+YV+NP   + ++  +D+ V 
Sbjct: 121 DGVDQPDALAGFAASAAMACSDIPFEYYISEVRVARINGEYVVNPTFQQMEEADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E  ++SE  ++ A+       KP+ E   +LAK    +  V    D   
Sbjct: 181 ATKDNIMMVEGEMKEVSEQDLIGALKVAAEAIKPMCELQYELAKEKGTD--VKREYDHEI 238

Query: 240 LEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSY-------FSSEHSSWN 287
            +EE+ + IK +L    +       EK+ R    D +    +          S E     
Sbjct: 239 NDEELREQIKSELYKPAYDINHQALEKHARQDAFDKVLADFLEKYDAAHTDLSEEDLEEK 298

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             E    ++D+    +R  +LD+ +R+DGR +  +R I  +V  L   HGS++F RG+T 
Sbjct: 299 HAEATRYYDDVMRDAMRRCILDEGLRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETM 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++   TLGT+ DE+ +D +       F++HYNF P +TGE        RREIGHG LA R
Sbjct: 359 SLSTCTLGTKMDEKLIDGVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWR 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
            +   +P    FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+
Sbjct: 419 GLKGQIPT--DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLI 476

Query: 468 KD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+   D + ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK
Sbjct: 477 KNPGEDKYAILSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEEALMQAK 536

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
            GR HILN M + +SE R ++    PR+    IP + I  VIG GGK+I+ + E TGA +
Sbjct: 537 AGREHILNCMMETISEPRAEMKPQVPRIVAFDIPKEFIGAVIGPGGKIIQQMQEDTGATI 596

Query: 586 NIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            I++    G V++++ +   I+AA   I++I  VPEV ++Y+G V  +M +G FV     
Sbjct: 597 TIEETDGQGHVQVSAPNKDSIDAALAKIKAIVAVPEVGEVYEGTVRSIMPYGCFVEILPG 656

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           +DGL+HIS++  +R+    +  +KEGD + VKL++ D + GK KLS +V+ +  
Sbjct: 657 KDGLLHISEIDWKRLETVEEAGIKEGDKIKVKLMEIDPKTGKYKLSHRVLMEKP 710


>gi|58698478|ref|ZP_00373385.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58535017|gb|EAL59109.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 677

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/681 (45%), Positives = 438/681 (64%), Gaps = 6/681 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GR L LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRTLSLETGKIARQAHGSVVVNYGDTSVLVTVV-SKKKEENVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQ-GSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E +  SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +   +D   +     K  R + ++ +++ +++      +  +E  I    ++ 
Sbjct: 240 DITQEL-EKYGKDFEKAYSQTVKQERVQALEAIRENILNTLKE--TGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDED+LG MDFKVAGT  G+TA+QMDMKI GIS  I+  +L+QAK GRLHIL +M+ V
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNAV 536

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +SE    + +  PR+    I  D+I   IG  GK IR + E++ AK+ I DDG V + ++
Sbjct: 537 ISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFAT 596

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S  E E A+ M+       E   I   +VV++      + F   R G +HIS+++ E + 
Sbjct: 597 SGTEAEIAKSMMIDSITELEQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHID 656

Query: 659 KTSDVVKEGDTVWVKLLDFDD 679
               V+K+ DT    ++DF+ 
Sbjct: 657 SIESVLKQDDTFKALVIDFEK 677


>gi|118471281|ref|YP_886993.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium smegmatis
           str. MC2 155]
 gi|187610287|sp|A0QVQ5|PNP_MYCS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118172568|gb|ABK73464.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mycobacterium smegmatis str. MC2
           155]
          Length = 763

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/712 (39%), Positives = 423/712 (59%), Gaps = 41/712 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T++L+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGSAVAYLDDETMLLSATTASKNPKDHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT------- 181
           ++ AAS +  L+GLPF GPV GA++  I+G +V  P +++ +    D+ V+G        
Sbjct: 142 AINAASMSTQLAGLPFSGPVGGARIALIDGTWVAFPTVEQLERAVFDMVVAGRIVGDGDS 201

Query: 182 -QDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
              A++MVE EA +             +E VV + +       K +  A  +LA   AK 
Sbjct: 202 ADVAIMMVEAEATENVVELVAGGAQAPTEAVVAEGLEAAKPFIKALCAAQQELADRAAKP 261

Query: 229 ----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
               P+  D +  + + + ++ +  E L  +  I  K  R  + D++K +++   +  ++
Sbjct: 262 AGEYPVFPDYE--ADVYDAVASVATEALAEALTIAGKTERNDRTDEIKVEVLERLAEPYA 319

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E EI + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 320 G-REKEIGAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVIPRAHGSALFERG 378

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 379 ETQILGVTTLDMIKMAQQIDSLGPENTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL 438

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAM
Sbjct: 439 AERALVPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAM 498

Query: 465 GLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GLV D  D        ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   +
Sbjct: 499 GLVSDDVDVDGKVEKRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQV 558

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QAK  RL IL+ M++ +     ++  + PR+  + +P D+I  VIG  GK+I  
Sbjct: 559 LAGALSQAKDARLTILDVMAEAIDRP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMINS 617

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFG 634
           I E+TGA+++I+DDGTV + ++     +AA + I +I    +P+V + + G VVK  DFG
Sbjct: 618 ITEETGAQISIEDDGTVFVGAADGLSAQAAIDKINAIANPQLPKVGERFLGTVVKTTDFG 677

Query: 635 AFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           AFV     RDGLVHIS+L   +R+AK  DVVK GD + V++ D D+RGKI L
Sbjct: 678 AFVSLLPGRDGLVHISKLGKGKRIAKVEDVVKVGDKLRVEIADIDNRGKISL 729


>gi|257055504|ref|YP_003133336.1| polynucleotide phosphorylase/polyadenylase [Saccharomonospora
           viridis DSM 43017]
 gi|256585376|gb|ACU96509.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Saccharomonospora viridis DSM 43017]
          Length = 823

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/715 (39%), Positives = 424/715 (59%), Gaps = 43/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   + T+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 24  FGQRTVRFETGRLARQAAGSVVAYLDDETMVLSATTASKQPKEQFDFFPLTVDVEERMYA 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F++  +NE Q+++ V     +    V+
Sbjct: 84  AGRIPGAFFRREGRPSTDAILTCRLIDRPLRPSFAEGLRNEIQIVVTVQSLHPDDPYDVL 143

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT------- 181
           ++ AASA+  ++GLPF GP+ G ++  I+G++V  P   + +  + ++ V+G        
Sbjct: 144 AINAASASTQIAGLPFSGPIGGVRLGLIDGEWVAFPTWSQLERATFNMVVAGRIVGDRPE 203

Query: 182 QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE- 228
             A++MVE E  + + D++ +         +  G +  KP I    EA  +LA + AK  
Sbjct: 204 DVAIMMVEAEGTENTLDLIANGATAPTEKTVAEGLDAAKPFIRVLCEAQQRLADVAAKPV 263

Query: 229 ---PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSE 282
              P+  D +  +   + ++ +  + L  +  I  K  R   ID++K  ++        E
Sbjct: 264 GEFPLFPDYEQDAY--DAVAAIATDGLAKALTIAGKQERENAIDEVKNAVLERVGIGEGE 321

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                E EI + F  +  K++R  +L  KVR+DGR    +R ++A+V ++ R HGS+LF 
Sbjct: 322 AFEGREKEIGAAFRALTKKLIRQRILRDKVRIDGRGVTDIRQLAAEVSVVPRAHGSALFE 381

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL     EQ +D+LS      F+ HYNF P +TGE  R+G P RREIGHG
Sbjct: 382 RGETQILGVTTLNMLRMEQQLDTLSPETTKRFLHHYNFPPYSTGETGRVGTPKRREIGHG 441

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PV+P+  +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGI
Sbjct: 442 MLAERALVPVVPKREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGI 501

Query: 463 AMGLVKDGDD---------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           AMGLV D  +         ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI 
Sbjct: 502 AMGLVSDEVENENGETEVRYVALTDILGAEDAFGDMDFKVAGTREIITALQLDTKLDGIP 561

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  AL+QA+  RL IL+ M++ +     ++  + PRV  + +P D+I  VIG  GK+
Sbjct: 562 SDVLAAALEQARDARLTILDVMAEAIDGP-DEMSPYAPRVTSLKVPVDKIGEVIGPKGKM 620

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVM 631
           I  I E+TGA ++I+DDGT+ + ++     +AA E I +I    +P+V + Y G VVK  
Sbjct: 621 INSITEETGADISIEDDGTIYVGAADGPSADAAIEKINAIANPQLPKVGERYLGTVVKTA 680

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     RDGLVHIS+L   +RVAK  DVV  GD + V++ D D RGKI L
Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGNGKRVAKVEDVVHVGDKLQVEIADIDSRGKISL 735


>gi|312194991|ref|YP_004015052.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EuI1c]
 gi|311226327|gb|ADP79182.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EuI1c]
          Length = 727

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/705 (40%), Positives = 428/705 (60%), Gaps = 33/705 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
              R ++ ETGR+A+Q+ G+V+A  G+T+VL+     ++ K+  DFFPLTV+ +ER YA 
Sbjct: 16  LGTRTIRFETGRLAKQAAGSVVAYLGDTMVLSATTASKNPKENLDFFPLTVDVEERMYAA 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  V+  D E+   VV+
Sbjct: 76  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFTKGLRNEIQVVATVLALDPETLYDVVA 135

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG------TQD 183
           + AASA+ +L+GLPF GPV   +V Y++GQ+V  P   E  + + D+ V+G      +  
Sbjct: 136 INAASASTLLAGLPFTGPVGATRVGYVDGQWVAFPTHAELARATFDMVVAGRVLEDDSDV 195

Query: 184 AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLA----KMCAK 227
           A++MVE EA               +EDVV   +       + +  A  +LA    K   +
Sbjct: 196 AIMMVEAEATPGTVALLADGAPAPTEDVVAAGLEAAKPAIRELCRAQRELAAAAAKPVRE 255

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D  D   + + ++  + ++L  +  I  K  R  ++D +K   V    S+     
Sbjct: 256 YPVFLDYTD--DVLDVLTNAVGDELAAALRIAGKQERETELDRVKALAVEKVGSQFDG-R 312

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  K+VR  +++  +R+DGR +  +R +SA+V  + R HGS+LF RG+TQ
Sbjct: 313 EKEIGAAYRALTKKLVRKRVVEDGLRIDGRATTEIRALSAEVDYVPRVHGSALFERGETQ 372

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 373 ILGVTTLAMLRLEQTIDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 432

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+
Sbjct: 433 ALLPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLI 492

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           ++GD F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  N++  ALQQA+  
Sbjct: 493 REGDAFVTLTDILGAEDAYGDMDFKVAGTREFVTALQLDTKLDGIPANVLAAALQQARAA 552

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RL IL+ M++ +     ++ +  PRV  + IP D+I  VIG  GK+I  I   +GA++ +
Sbjct: 553 RLAILDVMAEAIEGP-DEMSQHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITV 611

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +DDGT+ I ++     E AR  I +I    +PEV + Y G +VK+ +FGAFV     +DG
Sbjct: 612 EDDGTIYIGAADGVSAETARSAINAIANPQMPEVGERYLGTIVKITNFGAFVSLTPGKDG 671

Query: 646 LVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           L+H+S+L      +RV K  DV+  G  + V++ + D RGKI LS
Sbjct: 672 LLHVSKLKQLSGGKRVEKVEDVLNVGQKLQVEITEIDSRGKISLS 716


>gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha275]
          Length = 579

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/578 (49%), Positives = 395/578 (68%), Gaps = 4/578 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD H    ++    + LETG IARQ+  AV  + G+TVVL  V  ++ +K+GQDFFPLT
Sbjct: 1   MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y ERTYA GKIPGG+ +RE + +E EIL SR+IDR IRPLF + + ++ Q++  V+  
Sbjct: 61  VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D E    + +M+ ASAAL+LSG+PF GP+  A+V Y+NG YVLNP   E  +  LDL V+
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FS 238
           GT  AVLMVE EA  L EDV+L A+++GH++ +  I AI++ A     E     + +   
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSSWNEGEIVSVFED 297
           +L  ++ ++  E ++ +  I +K  R  ++D+    +     + E  +    EI  +F+ 
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++A VVR+ +LD + R+DGRD+ TVR ++ Q G+L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D+LSG   + FM+HYNF P +TGEV R+GAP RREIGHGRLA+RA+  VLP+  
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            F YT+R+VSEITES+GSSSMA+VCG  L+L+ AGVP+   VAGIAMGL+ +G+ F +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI++ IM +AL QAK  RLHIL++M  
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            ++    +L    PR+  M I  D+IR VIG GG+ IR
Sbjct: 541 AVAGP-QELSAHAPRLFTMKINQDKIREVIGKGGETIR 577


>gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea]
          Length = 822

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/742 (39%), Positives = 435/742 (58%), Gaps = 60/742 (8%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            ++V+I +  R + +ETG I RQ+ GAV  T GET+V  TV       +  DFFPL+VNY
Sbjct: 77  PYSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNY 136

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  A G+  GG+ +RE RP +NE+L+ R+IDR +R    K + +ETQ++  V+ +D  
Sbjct: 137 QERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGL 196

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P  +++ AA  A+ LS LP   PV G +V  + G+Y++NP  +E +   LDL V+GT 
Sbjct: 197 HPPDALAVTAAGIAVALSELPHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLVVAGTD 256

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            A+LM+E   N L E+ +L+A+  G +  + + + +  L + C K  ++   K    +L 
Sbjct: 257 SAILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGKPKMIDAIKLPPPELY 316

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV------------------SYFSSEH 283
           + + ++  ++L  +  I +K  R K +  L++K+V                        +
Sbjct: 317 KHVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVGKSVATVIPETLPDLY 376

Query: 284 SS-------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKV 312
                                            ++E ++  VF++  +K +R  +++   
Sbjct: 377 VDEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKETTSKYLRKRIVEGGR 436

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR- 371
           R DGR SE VR I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G    
Sbjct: 437 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 496

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             F + Y+F P   GE  R+GAPSRREIGHG LA RA+ P+LP   +FPYT+R+ S ITE
Sbjct: 497 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYTVRVESNITE 556

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDH 485
           S+GSSSMA+VCG SLAL+DAGVP+  P+AGIAMG+V D  +F      +ILSDI+G ED 
Sbjct: 557 SNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDA 616

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAG    +TA QMD+K+GGI+ ++M  AL QAK GR  IL EMSK L      
Sbjct: 617 SGDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSKCLPPPSKT 676

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIE 604
           L  + P + +M + P+++  +IG GGK +R I+E TG + ++  DDGTVKI +  L  +E
Sbjct: 677 LSIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQDDGTVKITARDLESLE 736

Query: 605 AAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            ++ MI ++T VP +  IY+   +K +  +GAFV     R+GL HIS+LS   +AK  D 
Sbjct: 737 KSKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSPSYLAKAEDA 796

Query: 664 VKEGDTVWVKLLDFDDRGKIKL 685
            K GD V VKL++ +++G++ L
Sbjct: 797 FKVGDRVDVKLIEVNEKGQLAL 818


>gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. St. Maries]
 gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           St. Maries]
          Length = 805

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/703 (47%), Positives = 468/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDED-QGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    K+ +     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF----SSEHSSWNEGEIV 292
             K+  ++S    E   V+     K  R  Q+D  ++ + S        E   + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++  D +  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGID-KDHVQLSMRRVDQDSG 701


>gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Puerto Rico]
          Length = 805

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/703 (47%), Positives = 469/703 (66%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E+ ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDESVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDED-QGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    K+ +     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF----SSEHSSWNEGEIV 292
             K+  ++S    E   V+     K  R  Q+D  ++ + S        E   + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYSDLCRKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++  D +  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGID-KDHVQLSMRRVDQDSG 701


>gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5]
 gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5]
          Length = 775

 Score =  688 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/677 (38%), Positives = 423/677 (62%), Gaps = 8/677 (1%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +ETG+ A+ +DG+V+   G T VL T V         DF PL V+Y+ER  A G+IP
Sbjct: 15  PIIIETGKYAKLTDGSVVVRQGGTAVLVTAVMSDEPITDVDFTPLAVDYRERASAYGRIP 74

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+ +RE +PT+ EIL+SR+IDR IRPLF + + ++  +    +  D +  P V+++  A
Sbjct: 75  GGFTKREGKPTDREILVSRVIDRPIRPLFPEGFFHDVIITALTLSADDKYDPDVLAITGA 134

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           SAAL +S +PFEGP+ G +V  +NG++V NP  ++  +  LD+ ++GT+DA++MVE    
Sbjct: 135 SAALHISRIPFEGPIAGVRVCRVNGEFVANPTYEQRKEADLDIVMAGTKDAIVMVEGGGK 194

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDL 252
           ++ E+V+ DA+ FG +  K VIEA  +L +   K        +  + + + + +     +
Sbjct: 195 EIPEEVLADALFFGLDAIKEVIEAQERLREKVGKPKFEYQKVELPEDILKALEEECTPKI 254

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
             +  I +K  R   +D + ++ +     +        +   ++ ++++++R  +L + V
Sbjct: 255 LEAFNIKDKKERYSTLDKIVEEFIEAH--QIPEELHFAVKYFYKKLESRLMREKVLKEGV 312

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGTQR 371
           R+DGR    +R I  +V   +R HG+++F RG TQA V VTLGT ++   ++++  G   
Sbjct: 313 RIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEGEVF 372

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             FM+HY+  P + GE    G P RREIGHG LA RAI P+LP   ++P+ +R+VS+I E
Sbjct: 373 KRFMLHYSMPPFSVGEAKPWGPPRRREIGHGALAERAIEPLLPPEEEYPFIIRVVSDILE 432

Query: 432 SDGSSSMATVCGSSLALMDAGVPISK--PVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           S+GS+SMATVCG+SLAL DAGVP+     VAGIAMGL+ + D ++ILSDI GDEDHLG M
Sbjct: 433 SNGSTSMATVCGASLALFDAGVPMKDNKHVAGIAMGLILEKDRYVILSDILGDEDHLGDM 492

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT  GIT++QMD+K+ GI++ IM+ AL+QA+ GRL+IL +M + + E R +   +
Sbjct: 493 DFKVAGTKDGITSVQMDIKVKGITKEIMLDALKQAREGRLYILEKMYEAIPEPRKEPHPY 552

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
           TP+VE++ +P ++   +IG GG  ++ I ++TG KV + + G V +      ++E A++M
Sbjct: 553 TPKVEVVDVPEEKAPLIIGPGGSTVKKIYDETGVKVWVGEQGKVYLFVFPGGDVEKAKQM 612

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I+ I    EV  +YKG + +V  +G FV     + GL+H+S+++ E V   ++  K G+ 
Sbjct: 613 IQDIVREVEVGAVYKGTITRVEPYGVFVELWPGKIGLLHVSKMA-EPVRSATEKYKVGEE 671

Query: 670 VWVKLLDFDDRGKIKLS 686
           + VK+LD D+ G+ + +
Sbjct: 672 IIVKVLDLDELGRPRFT 688



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           + +    E      E  P    + +   ++   +    +  +   E     +++D+ G  
Sbjct: 627 KGTITRVEPYGVFVELWPGKIGL-LHVSKMAEPVRSATEKYKVGEEIIVKVLDLDELGRP 685

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +  +  + ++   ++ ++     P+V  +Y+G+VV+V  +GAF+ +   + GL+H+S++ 
Sbjct: 686 RFTTIGIEDVGTEKKEVK-----PKVGDVYEGKVVRVEPYGAFIEYAPGKVGLLHVSKM- 739

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            ERV       K GD V VK+++ D++G+ K +
Sbjct: 740 KERVKDARQKYKVGDVVKVKVVEIDEQGRPKFT 772


>gi|159036978|ref|YP_001536231.1| polynucleotide phosphorylase/polyadenylase [Salinispora arenicola
           CNS-205]
 gi|187611286|sp|A8M758|PNP_SALAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157915813|gb|ABV97240.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Salinispora arenicola CNS-205]
          Length = 786

 Score =  688 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/704 (39%), Positives = 416/704 (59%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     R  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTRVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEQFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D      VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   ++ +I+G +V  P  +E +  + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELERATFDMVVAGRALPDGDVA 199

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA +             +E+VV   +       + +  A S+LA++ AK     
Sbjct: 200 IMMVEAEATEHTVKLVAGGASAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D  D +   + ++ + + D+  +  I  K  R + +D +K +++           E
Sbjct: 260 PVFLDYSDDAY--QAVADLARSDVAEALKIAGKADREEALDRIKARVIEDLGPRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ +    +    VR+ +L ++VR+DGR    +R ++A+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAALRSLTKSEVRSRVLREQVRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  +    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVEGKTRYVTLTDILGAEDAFGDMDFKVAGTQEFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL  M   +      + ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 YEARQTILEVMQAAIEAP-ATMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA E + +I +  +P+V   + G VVK   FGAFV     
Sbjct: 616 ISIEDDGTIYVGATNGPSAQAAVERVNAIANPTLPKVGDRFLGTVVKTAAFGAFVSLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDYLNVGDKVEVEIADIDQRGKIYL 719


>gi|172035539|ref|YP_001802040.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. ATCC
           51142]
 gi|254782715|sp|B1WQ52|PNP_CYAA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171696993|gb|ACB49974.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 715

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/696 (41%), Positives = 434/696 (62%), Gaps = 16/696 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ GAVL   G+   +         ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKLGLLAPQAGGAVLIQSGD-TAVLVTATTTKGREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E  ILISR+IDR +RPLF   ++N+ Q+I   +  D E  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRNDIQIIATTLSMDEEVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  +S A++ + +PF GP+   +V  I   +++NP   E + G LDL V+G+ D V
Sbjct: 125 DVLAVTGSSIAVIQAQIPFYGPMAAVRVGLIGDDFIINPTYREVENGDLDLVVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           +MVE  ANQL E  +++AI FG+   + +I A  ++ +    E    +     + LE+ +
Sbjct: 185 VMVEAGANQLPEQDIIEAIDFGYEAVRDLIGAQYEIMEELGMEIAKAEPPSVDEALEKFI 244

Query: 245 SQMIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSS---------WNEGEIVS 293
           S    + ++     +   K  R   +D++K+  +    +E             +   + +
Sbjct: 245 SDRAADSIKKVLVQYDLGKAERDSALDNIKETAIEEAIAELPEDDPIKVTTSEDPKAVGN 304

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVV 352
           +++ +  K++R+ ++D+ +R+DGR  + VR IS +VGLL  R HGS+LF RG TQ   + 
Sbjct: 305 LYKGLTKKLMRSQIVDEGIRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLA 364

Query: 353 TLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           TLGT  D Q + D L       ++ HYNF P + GE   + +P RREIGHG LA RAI P
Sbjct: 365 TLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSVGETKPLRSPGRREIGHGALAERAILP 424

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++G 
Sbjct: 425 VLPPQDEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIREGK 484

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  IL+DI G ED LG MDFKVAGTD+GITA+QMDMKI G+S +++  A++QA   RLHI
Sbjct: 485 EVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKITGLSMDVVAKAIEQALPARLHI 544

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L++M  V+ + R +L  F PR+  M I P+QI  VIG GGK I+ I EQTG+K++I DDG
Sbjct: 545 LDKMLAVIDQPRPELSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIADDG 604

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV IA+    + E AR++I ++T      ++Y G+V +++  GAFV     ++G++HISQ
Sbjct: 605 TVTIAAIQAKKAERARDLIFNMTRKLNEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHISQ 664

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           L+  RV K  + V  GD V VK+ + D++G++ L+ 
Sbjct: 665 LAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLTR 700


>gi|300770058|ref|ZP_07079937.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762534|gb|EFK59351.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 729

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/695 (42%), Positives = 432/695 (62%), Gaps = 9/695 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G  ++L TG++A+Q+DG+V+   G+T++LATVV  R  K G DF PL+V+YQE+  A G
Sbjct: 14  NGTQIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y  +TQV+I+++  D +  P  ++ 
Sbjct: 74  RIPGGFLRREARLSDYEVLISRLVDRALRPLFPENYHADTQVMISLISADKDIMPDALAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVEL 190
           +AASAA+ +S +PF GP+   +V  I+GQ V+NP+L + +  +L+  V+G+   + MVE 
Sbjct: 134 LAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLEFVVAGSAQDIGMVEG 193

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVID-SKDFSKLEEEMSQMI 248
           EAN++SE  +++AI F H   K  I A  +LA +         +      +L E +    
Sbjct: 194 EANEISEAEMVEAIAFAHEAIKKQIAAQVELANLVGATTKREYNHEPSNPELREAIFAAT 253

Query: 249 KEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            + +   +     K+ R ++  ++ ++       E     +      F D+Q   VR ++
Sbjct: 254 YDKVYAIAKSGSTKHERGEKFAEIGEEFFVTLGEEIDDDTKFLAKKYFHDVQYDAVRNLV 313

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           LD+ +R+DGRD  TVR I ++V  L   HGS++F RG+TQ++  VTLG ++DEQ +D   
Sbjct: 314 LDEGIRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAF 373

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
               N F++HYNF   +TGEV     P RRE+GHG LA R++  VLP  A+ PYT+R+VS
Sbjct: 374 INGYNKFILHYNFPAFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPADAENPYTIRVVS 433

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDH 485
           +I ES+GSSSMATVC  +LALMDAGV +  PV+GIAMGL+ D     + ILSDI GDEDH
Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTGKYAILSDILGDEDH 493

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKV GT  GI A QMD+KI G+   ++  AL QAK  RLHIL EM+K +S  R  
Sbjct: 494 LGDMDFKVTGTSKGIVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAKTISAPRED 553

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIASSSLAE 602
                PR+  + I  + I  VIG GGK+I+ +  +TGA ++I++    G V+I + + A 
Sbjct: 554 YKPHAPRIIQIIIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVDNKGIVQIFADNKAA 613

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A   IR+I   PE+   Y+G+V  +M FGAFV     +DGL+HIS++  +R      
Sbjct: 614 IDEASARIRAIAAKPEIGATYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRYETMDG 673

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           + KEGD V VKLLD D +GK+KLS K +     + 
Sbjct: 674 IFKEGDKVTVKLLDIDKQGKMKLSRKALLPRPPRE 708


>gi|224533452|ref|ZP_03674045.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           CA-11.2a]
 gi|224513414|gb|EEF83772.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           CA-11.2a]
          Length = 722

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/716 (40%), Positives = 444/716 (62%), Gaps = 35/716 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKL 240
            + MVE  AN++ ED++L AI   H   K +  A  +   +  K+   P+  + K F + 
Sbjct: 183 GITMVEGGANEVGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298
           ++E+   +  DL+ +CF+  K  R K I  L+ K   YFS   + +  NE      F+D 
Sbjct: 242 KDELRDFVYADLKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EKEIVRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    
Sbjct: 362 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKND 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +   
Sbjct: 541 ISNSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQL 652
              +++ A+E I SI   P+V +IY+G V K+  FGAFV    A++G +        S+ 
Sbjct: 601 DDFKMQKAKERIESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKY 660

Query: 653 STERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
            + R   ++                       ++EG  + VK++D D  GKI L +
Sbjct: 661 GSGRFGNSNRYSRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|226320852|ref|ZP_03796404.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           29805]
 gi|226233718|gb|EEH32447.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           29805]
          Length = 722

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/717 (40%), Positives = 444/717 (61%), Gaps = 35/717 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y
Sbjct: 2   KKILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  
Sbjct: 62  NEKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQL 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           + P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ 
Sbjct: 122 NPPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSL 181

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSK 239
           + + MVE  AN++ ED++L AI   H   K +  A  +   +  K+   P+  + K F +
Sbjct: 182 NGITMVEGGANEVGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-E 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFED 297
            ++E+   +  DL+ +CF+  K  R K I  L+ K   YFS   + +  NE      F+D
Sbjct: 241 FKDELRDFVYADLKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            + ++VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT 
Sbjct: 301 FEKEIVRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTS 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P   
Sbjct: 361 IDEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKN 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LS
Sbjct: 420 DFPYTIRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ 
Sbjct: 480 DILGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNT 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
           V+S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +  
Sbjct: 540 VISNSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQ 651
               +++ A+E I SI   P+V +IY+G V K+  FGAFV    A++G +        S+
Sbjct: 600 DDDFKMQKAKERIESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSK 659

Query: 652 LSTERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
             + R   ++                       ++EG  + VK++D D  GKI L +
Sbjct: 660 YGSGRFGNSNRYSRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 897

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/753 (38%), Positives = 440/753 (58%), Gaps = 59/753 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             +V+I    R + +ETG I RQ+ G+V+ T GET+V  +V    +  D  DFFP++V+Y
Sbjct: 88  KFSVKIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTPSDPSDFFPMSVHY 147

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  A G+  GG+ +RE R  ++E+L+ R+IDR +RP   K +  ETQ++  V  +D  
Sbjct: 148 QERLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGL 207

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            SP  V++ AA  A+ LS +P +  + G ++  IN Q+V+NP  ++ +   LDL ++GT 
Sbjct: 208 HSPDCVAVTAAGIAMALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMEDSELDLMMAGTD 267

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            A+LM+E   N L+E+ +L A+  G    + + +AI  L + C K+ +V        +L 
Sbjct: 268 SAILMIEGFCNFLTEEKLLQAVETGQAAIREICKAIDVLVQTCGKKKMVEAINLPPTELY 327

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------------------ 283
             +  +  E+L  +  I EK +R K +  L++K++   S +                   
Sbjct: 328 RHVEDLSGEELVKALQIKEKILRRKALSALEEKVIMILSEQGYVSKDELSGTIENLADIV 387

Query: 284 ------------------------------SSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
                                           ++E ++  VF+++ +K +R  +++ + R
Sbjct: 388 EEEDEDEVIEDGEVDEGDVHIKPVSRKPRRQLFSEVDVKLVFKEVSSKYLRRRIVEGEKR 447

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRN 372
            DGR +  +R I++Q G+L R HGS+LF RG+TQA+ VVTLG  +  Q +D+L    +  
Sbjct: 448 SDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEESK 507

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            F + Y F P + GEV R GAP+RREIGHG LA RA+ P+LP    FPYT+R+ S ITES
Sbjct: 508 SFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPPEVDFPYTIRVESTITES 567

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486
           +GSSSMA+VCG  LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED  
Sbjct: 568 NGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTHEFGGDGTPLILSDITGSEDAS 627

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAG + GI+A QMD+K+ GI+  +M  AL QA+ GR HILNEM K        L
Sbjct: 628 GDMDFKVAGNEHGISAFQMDIKVVGITLPVMEQALLQARDGRNHILNEMLKCSPPPSKAL 687

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEA 605
               P + +M + P+++  +IG GG+ I+ I+E+TG   ++  DDGTVKI +  +  +E 
Sbjct: 688 SPHAPVIHVMKVKPNKVNLIIGSGGRTIKSILEETGVYAIDARDDGTVKITARDMKSLEK 747

Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ +I ++T VP+V +I++   +K V  +GAFV     R+GL HIS+LS+  +AK  D  
Sbjct: 748 SKNIITNLTMVPKVGEIFRNCEIKTVAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAY 807

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K GD + VKL++ +D+G+++LS K +  ++ + 
Sbjct: 808 KVGDRIDVKLIEINDKGQLRLSCKALLPDSNQE 840


>gi|87123698|ref|ZP_01079548.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9917]
 gi|86168267|gb|EAQ69524.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9917]
          Length = 691

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/677 (41%), Positives = 410/677 (60%), Gaps = 18/677 (2%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +   G+T VL T     S ++G DF PL  +Y+ER YA G+IPG ++RRE RP E   LI
Sbjct: 1   MIECGDTSVLVTATRS-SGREGIDFLPLICDYEERLYAAGRIPGSFMRREGRPPERATLI 59

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           SR+IDR +RPLF    +++ Q++   M  D      V+++  AS A +L+G+PF GP+  
Sbjct: 60  SRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVPADVLAVTGASMATLLAGIPFHGPMAA 119

Query: 152 AQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
            +V  +   +VLNP   E ++G LDL V+GT + V+MVE  ANQL E  V++AI FG+  
Sbjct: 120 VRVGLLGDDFVLNPSYREIERGDLDLVVAGTPEGVVMVEAGANQLPEQDVIEAIDFGYEA 179

Query: 211 CKPVIEAISKLAKMCAKEPIVIDSKDFSK-----LEEEMSQMIKEDLRVSCFIPEKYVRC 265
              +I+A  ++ K    E ++  + +        LE++ S+ I E L+   F   K  R 
Sbjct: 180 VCELIKAQQEILKQAGIEQVIPPAPEPDATLPSYLEKQCSKSIGEVLK--HFEQSKAERD 237

Query: 266 KQIDDLKK---KMVSYFSSEHS-----SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
            ++D ++    + +     +       S N   + + F+ +  K++R  +L    R+DGR
Sbjct: 238 AKLDAIRASTAETIQGLKEDDPVRQAVSANSKALPATFKALTKKLMRQQILKDGKRVDGR 297

Query: 318 DSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
             + VR ISA  G+L  R HGS LF RG TQ +   TLGT  D Q +D L+ +    ++ 
Sbjct: 298 GLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSTEKTYLH 357

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           HYNF P + GE   M +P RREIGHG LA RAI PVLP    FPY +R+VSE+  S+GS+
Sbjct: 358 HYNFPPYSVGETKPMRSPGRREIGHGALAERAILPVLPAKDTFPYVVRVVSEVLSSNGST 417

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
           SM +VCGS+LALMDAGVP+  PV+G AMGL+K+GD+  IL+DI G ED LG MDFKVAGT
Sbjct: 418 SMGSVCGSTLALMDAGVPLKSPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVAGT 477

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           D GITA+QMDMKI G++ + +  A+ QA+  RLHIL +M + +   R  L    PR+   
Sbjct: 478 DKGITALQMDMKITGLAVSTVAEAVNQARPARLHILEKMMQAIDTPREGLSPHAPRLLSF 537

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I P+ I  VIG GG+ I+GI E+T  K++I+D G V IAS   A  + A+++I  +T  
Sbjct: 538 RIDPELIGTVIGPGGRTIKGITERTNTKIDIEDSGIVTIASHDGAAADEAQKIIEGLTRK 597

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               +++ G + +++  GAFV     ++G++HISQLS  RV K  DVVK GD V V++ +
Sbjct: 598 VNEGEVFSGAITRIIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVVKVGDEVTVRVRE 657

Query: 677 FDDRGKIKLSMKVVDQN 693
            D+RG+I L+++ V QN
Sbjct: 658 IDNRGRINLTLRGVPQN 674



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 23/213 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLKDGQDFFPLT-----VNYQER 66
           RP+    G + ++  G+ L   G T VL+T         ++  D  P T      +Y   
Sbjct: 303 RPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSTEKTYLHHYNFP 362

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+      +    P   EI    + +R+I P+      +    +V+  V+  +  +
Sbjct: 363 PYSVGET-----KPMRSPGRREIGHGALAERAILPVLPAKDTFPYVVRVVSEVLSSNGST 417

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVS 179
           S  + S+  ++ ALM +G+P + PV GA +  I  G  V        +++  G +D  V+
Sbjct: 418 S--MGSVCGSTLALMDAGVPLKSPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVA 475

Query: 180 GTQDAVLMVELEA--NQLSEDVVLDAIIFGHNE 210
           GT   +  ++++     L+   V +A+      
Sbjct: 476 GTDKGITALQMDMKITGLAVSTVAEAVNQARPA 508


>gi|206895816|ref|YP_002247081.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|257096676|sp|B5Y8I4|PNP_COPPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206738433|gb|ACI17511.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 697

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/692 (38%), Positives = 422/692 (60%), Gaps = 4/692 (0%)

Query: 1   MFDVHTVEIE--WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M +   +E+    AG+ +  ++G +A Q++GAVLA +G+TV L+TV+     K   DFFP
Sbjct: 1   MIERKKIEVTGTVAGKKVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E++YAVGKIPGG+ ++E RPT+ EIL +R+IDRSIRP+F    +NE QV+  ++
Sbjct: 61  LTVDYEEKSYAVGKIPGGFFKKEGRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMIL 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLF 177
             D+E+ P +V++   +AAL +S +P    + G +V YI+G+YVLNP   E  +  LDL 
Sbjct: 121 AADMENPPDIVALNGTAAALAVSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLV 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           V+GT+D+++M+E  A ++ + +++  + F     + +I+ I++L +   +    I    F
Sbjct: 181 VAGTRDSIVMIEAGAAEVDKSILIGGLKFAQEGIRQIIDLIAELKEKVGRPKAEITVVSF 240

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            + + +  +  ++  R +   P K  R + + +LKK +           +E     +F +
Sbjct: 241 PQEQLDFMRNHEDRFRAALITPIKQERERAVSELKKALFQEMLEVFPDLDEAMFNLMFGE 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR  M   + R+DGR  + +R + A+  +L + HGS LFIRG TQ +  VTLG+ 
Sbjct: 301 VEKEVVRAYMKSTRKRVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSF 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q++D++   +   FM  Y+F P +TGEV     PSRREIGHG L  RA+  ++P   
Sbjct: 361 SDVQFIDAIGLEEFKRFMHQYDFPPFSTGEVKPRRGPSRREIGHGALVERALSYLIPSEE 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPYT+R+VSE+ ES+GS+SMA+ C SS+ALM AGVP+++ V GIAMGL++  D+ ++L+
Sbjct: 421 VFPYTIRVVSEVLESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYNDENVVLT 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDHLG MDFKVAGT  GITA+Q+D+K+ GIS   +  A+ QA+  R  IL+ +  
Sbjct: 481 DIQGLEDHLGDMDFKVAGTREGITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYD 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  L E  PR+  + IP D+I  VIG GG+ ++ I ++TGA ++I +DG   +  
Sbjct: 541 AIPSPRP-LSETAPRIVKIEIPVDKIGEVIGPGGRNVKRITQETGATIDIREDGVAFVKG 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            +   +  A++ +  I   PEV +    +VV+V    A V     + GL+H+S++S  R+
Sbjct: 600 LTDESVNMAKQQVEMIVKDPEVGEELTARVVRVTPSYAIVEIAPGKTGLLHVSEVSETRI 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
               DV+  G T+ V + + D  G+++ S K 
Sbjct: 660 RSLEDVLSVGQTIKVWVKEKDGEGRLRFSAKE 691


>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
 gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
 gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
          Length = 902

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/753 (38%), Positives = 441/753 (58%), Gaps = 59/753 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             + +I    R + +ETG I RQ+  +V+ T GET+V ++V    +  D  DFFP++V+Y
Sbjct: 89  KFSTKIPVGDRHILVETGHIGRQASASVMVTDGETIVYSSVCLADTPNDPSDFFPMSVHY 148

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  A G+  GG+ +RE R  ++E+L+ R+IDR +RP   K +  ETQ++  V  +D  
Sbjct: 149 QERLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGI 208

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
            SP  +++ AA  A+ LS +P +  + G +V  IN Q+V+NP  ++ D   LDL ++GT 
Sbjct: 209 HSPDSLAITAAGVAMALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTD 268

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSKLE 241
            A+LM+E   + L+E+ +L A+  G    + + +AI  L + C K+ +         +L 
Sbjct: 269 SAILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKMFDAIDLPPPELY 328

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------------------ 283
             +  +  ++L  +  I EK +R K +  L++K+++  S +                   
Sbjct: 329 RHVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADVI 388

Query: 284 ------------------------------SSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
                                           ++E ++  VF+++ +K +R  +++   R
Sbjct: 389 EEEDEDEVIVDGEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGKR 448

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRN 372
            DGR    +R I++Q GLL R HGS+LF RG+TQA+ VVTLG  +  Q +D+L    +  
Sbjct: 449 SDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESK 508

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            F + Y F P + GEV R+GAP+RREIGHG LA RA+ P+LP    FPYT+R+ S ITES
Sbjct: 509 SFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITES 568

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHL 486
           +GSSSMA+VCG  LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED  
Sbjct: 569 NGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDAS 628

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G MDFKVAG ++GI+A QMD+K+ GI+  IM  AL QA+ GR HILNEMSK        L
Sbjct: 629 GDMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKVL 688

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEA 605
             + P + +M + P+++  +IG GGK I+ I+E+TG   ++  DDGTVKI +  L+ +E 
Sbjct: 689 SPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLEK 748

Query: 606 AREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ +I ++T VP+V +IY+   +K +  +GAFV     R+GL HIS+LS+  +AK  D  
Sbjct: 749 SKAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAF 808

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K GD + VKL++ +D+G+++LS + +  +  + 
Sbjct: 809 KVGDRIDVKLIEINDKGQLRLSSRALLPDANQE 841


>gi|145224603|ref|YP_001135281.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium gilvum
           PYR-GCK]
 gi|315444934|ref|YP_004077813.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Mycobacterium sp. Spyr1]
 gi|189037310|sp|A4TCH6|PNP_MYCGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145217089|gb|ABP46493.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium gilvum
           PYR-GCK]
 gi|315263237|gb|ADT99978.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Mycobacterium sp. Spyr1]
          Length = 756

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/720 (38%), Positives = 423/720 (58%), Gaps = 42/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ GAV+A   + T++L+     +  K+  DFFPLT++ +ER YA
Sbjct: 22  FGTRTIRFETGRLARQAAGAVVAYLDDETMLLSATTASKQPKEHFDFFPLTIDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFISGLRNEIQVVVTVLSLDPKDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD----- 183
           ++ AASA+  +SG+PF GPV G +V  I+GQ+V  P +++ ++   D+ V+G +      
Sbjct: 142 AINAASASTQISGIPFNGPVGGVRVALIDGQWVAFPTVEQLEKAVFDMVVAGRKVGDAGN 201

Query: 184 ---AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLA--------KM 224
              A++MVE EA     ++V           +  G    KP I A+            K 
Sbjct: 202 EDVAIMMVEAEATDKVIELVAGGAGAPTEAVVAEGLEAAKPFIAALCDAQAALAGAAGKE 261

Query: 225 CAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
            A+ P+  D  +   +   ++ +  + L  +  I  K  R  + +++K ++V   + +++
Sbjct: 262 TAEYPVFPDYAE--DVYYSVASVATDALSEALTIAGKEARDDRTNEIKAEVVERLAEQYA 319

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E EI + +  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 320 G-REKEIGAAYRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAVIPRAHGSALFERG 378

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 379 ETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGAL 438

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAM
Sbjct: 439 AERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAM 498

Query: 465 GLVKDGDD---------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           GLV D  +         F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   
Sbjct: 499 GLVSDDVEVEGGGVERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQ 558

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QAK  R+ IL  M++ + E   ++  + PR+  + +P D+I  VIG  GK+I 
Sbjct: 559 VLAGALAQAKDARITILEVMAEAIDEP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMIN 617

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDF 633
            I E+TGA ++I+DDGTV + +S+    +AA + I +I    +P+V + + G VVK  DF
Sbjct: 618 SITEETGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKVGERFLGTVVKTTDF 677

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           GAFV     RDGLVHIS+L   +R+ K  DV K GD + V++ D D+RGKI L +   ++
Sbjct: 678 GAFVSLLPGRDGLVHISKLGRGKRINKVEDVAKVGDKLRVEIADIDNRGKISLVLVAEEE 737


>gi|312149591|gb|ADQ29662.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           N40]
          Length = 716

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/712 (40%), Positives = 442/712 (62%), Gaps = 35/712 (4%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ Y
Sbjct: 1   MKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +
Sbjct: 61  AAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ + + M
Sbjct: 121 VGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEM 244
           VE  AN++ ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+
Sbjct: 181 VEGGANEVGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDEL 239

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQAKV 302
              +  DL+ +CF+  K  R K I  L+ K   YFS   + +  NE      F+D + ++
Sbjct: 240 RDFVYADLKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEI 299

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ 
Sbjct: 300 VRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQI 359

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT
Sbjct: 360 MDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDFPYT 418

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+
Sbjct: 419 IRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGE 478

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S S
Sbjct: 479 EDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNS 538

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +
Sbjct: 539 RVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFK 598

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTER 656
           ++ A+E I SI   P+V +IY+G V K+  FGAFV    A++G +        S+  + R
Sbjct: 599 MQKAKERIESIVREPKVGEIYEGTVKKINSFGAFVELTPAKEGFLSTRLKPRDSKYGSGR 658

Query: 657 VAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
              ++                       ++EG  + VK++D D  GKI L +
Sbjct: 659 FGNSNRYSRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 710


>gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
 gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
          Length = 580

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/576 (46%), Positives = 387/576 (67%), Gaps = 7/576 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4   EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA GKIPGG+ +RE RP ++  L +R+IDR IRPLF K YK++ Q++  V+  D 
Sbjct: 63  YEEKMYAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADP 122

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP + +M+ +S AL +S +PF+GP+ G  V YI+G+Y++NP ++E +   LDL V+G 
Sbjct: 123 DCSPQMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGH 182

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-IVIDSKDFSKL 240
           +DAV MVE  A++++E  +L+AI FGH E + +++   ++           I ++    L
Sbjct: 183 KDAVNMVEAGASEITEQEMLEAIFFGHEEIQRLVDFQQQIVDHIQPVKQEFIPTERDEAL 242

Query: 241 EEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE---GEIVSVFE 296
            E +  + +E  L+ +    +K  R + +D+LK+++V+ F  E    NE    E+ ++  
Sbjct: 243 VERVKSLTEEKGLKETVLTFDKQQRDENLDNLKEEIVNEFIDEEDPENELLIKEVYAILN 302

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           ++  + VR ++ D+K+R DGR  + +R + ++VG+L RTHGS LF RG TQA+ V+TLG 
Sbjct: 303 ELVKEEVRRLIADEKIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGA 362

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +D L   +   FM HYNF   + GE   + AP RREIGHG L  RA+  ++P T
Sbjct: 363 LGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDT 422

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           A FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI  PVAGIAMGLV   D + IL
Sbjct: 423 ADFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED LG MDFKVAGT  GITA+QMD+KI G++  I+  AL+QA+RGRL I+N M 
Sbjct: 483 TDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHML 542

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           + + + R +L  + P+V  M I PD+IR+VIG GGK
Sbjct: 543 QTIDQPRTELSAYAPKVVTMTIKPDKIRDVIGPGGK 578


>gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii
           ATCC 33406]
 gi|123058787|sp|Q11U61|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 717

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/705 (41%), Positives = 447/705 (63%), Gaps = 13/705 (1%)

Query: 4   VHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    I    GR +++ETG++A+Q+DG+ +   G  ++LATVV  +  K G DF PL+V+
Sbjct: 8   IINKTITLPDGREIQIETGKLAKQADGSAVVKLGNAMILATVVSAKEAKPGVDFMPLSVD 67

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+  + GKIPGG+L+RESR ++ EILISR++DR++RPLF + +  +TQV I ++  D 
Sbjct: 68  YQEKFASNGKIPGGFLKRESRLSDYEILISRLVDRAMRPLFPEDFHADTQVAITLISADA 127

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           +  P  ++ +AA AA+ +S +PF GPV   +V  +NG++++NP+  + ++  L+L V+ +
Sbjct: 128 DVLPDALACLAAQAAMSVSDIPFNGPVSEVRVISLNGEFIINPKPAQIEKAELELIVAAS 187

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-- 239
            D V+MVE E +++SE+++L+AI   H+  +     + +L     K      S + +   
Sbjct: 188 YDNVIMVEGEMSEVSEELMLNAIKVAHDAIRTQCIVLKELESAAGKTEKRTYSHEVNDWD 247

Query: 240 LEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           L+++++  + + +          K  R +    +KK  +    ++H+  +   I   + D
Sbjct: 248 LKKKINDAVYQQVYEVAKLGNANKNTRAEGFKAVKKAYIESLPADHTE-DLTLIGKYYHD 306

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   VR ++LD++ R+DGR  E +R I ++VG L   HGS++F RG+TQ++  VT GTR
Sbjct: 307 VEKDAVRNLILDERKRLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTR 366

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DEQ +DS   +  N  M+HYNF   +TGEV     P RRE+GHG LA RAI  V+P   
Sbjct: 367 LDEQMIDSAMFSGNNKLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEI 426

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
           + PYT+RIVS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMGL+ D     + +
Sbjct: 427 ENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDTKTGRWAV 486

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKV GT+ GITA QMD+K+ G+S +I+  ALQQA RGRLHIL+EM
Sbjct: 487 LSDILGDEDHLGDMDFKVTGTEKGITACQMDIKVDGLSYDILSQALQQANRGRLHILSEM 546

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592
            K L+  R  L    PR+ ++ IP + I  VIG GGK+I+ I + +GA VNI++    G 
Sbjct: 547 KKTLATPREDLKPHAPRMIMIQIPKELIGAVIGPGGKIIQEIQKTSGATVNIEEKDNAGW 606

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I S     +++A   I+ I  +PEV ++Y+G+V  +  FGAFV F   +DGL+HIS++
Sbjct: 607 VSIFSKDKTALDSALSQIKGIVTLPEVGEVYEGKVKSITAFGAFVEFLPGKDGLLHISEI 666

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             ER+     V++ G+TV VKL++ D + GK +LS KV+     +
Sbjct: 667 KWERLDTMEGVLEVGETVKVKLVEVDKKTGKYRLSRKVLIPKPEQ 711


>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
 gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
          Length = 708

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/690 (42%), Positives = 442/690 (64%), Gaps = 9/690 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L ++ G++A+QS G+VL  +G+TVVLAT        +G DF PLTV +QER YA GK
Sbjct: 10  GRELVVQYGKVAKQSSGSVLVRFGDTVVLATANISDKAVEGVDFVPLTVEFQERFYAAGK 69

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    P VV + 
Sbjct: 70  IPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSIPPDVVGIF 129

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AAS AL +S +PFEG V G +V Y +GQ++  P  ++ ++G +D+ V+GT+DAV MVE E
Sbjct: 130 AASLALNVSKIPFEGVVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDAVTMVEGE 189

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMI-K 249
           A +++E+ ++ A+ F H+  K +++   ++      E I V++     +L E  ++++ +
Sbjct: 190 AKEVTEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEELVETFNELLNR 249

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKK----MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           E+L     +  K  R   + + +++    +V   S       +  +   +ED   K +R 
Sbjct: 250 EELERRILVKVKKEREAALKEYEEQLLNQIVERLSVTDPEEIKPFVSEFYEDAVKKTMRR 309

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   D Q +D+
Sbjct: 310 LIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDT 369

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +FPYT+R+
Sbjct: 370 LLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNILPPEEEFPYTIRV 429

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  IIL+DI G EDH
Sbjct: 430 VSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDIIGMEDH 489

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL+ M + +S  R  
Sbjct: 490 YGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYETISAPRPH 549

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIE 604
           L ++ P +++  + P+++ +VIG GG+VI+ I++    KV IDD+ G VK+  SS   ++
Sbjct: 550 LSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVGSSEENVD 609

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E+IR I    EV ++ +G+V ++  +G F+     + GL+H S++  + + +    V
Sbjct: 610 KAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVGED-MRQFLKKV 668

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K GDT+ V++++ DD G+++       +NT
Sbjct: 669 KVGDTIKVQVINIDDLGRLQFKRVTEGENT 698


>gi|221217569|ref|ZP_03589038.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
 gi|225549375|ref|ZP_03770347.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           94a]
 gi|225550249|ref|ZP_03771208.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           118a]
 gi|221192515|gb|EEE18733.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
 gi|225369117|gb|EEG98571.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           118a]
 gi|225370003|gb|EEG99444.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           94a]
          Length = 722

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/716 (40%), Positives = 444/716 (62%), Gaps = 35/716 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKL 240
            + MVE  AN++ ED++L AI   H   K +  A  +   +  K+   P+  + K F + 
Sbjct: 183 GITMVEGGANEVGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298
           ++E+   +  DL+ +CF+  K  R K I  L+ K   YFS   + +  NE      F+D 
Sbjct: 242 KDELRDFVYADLKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EKEIVRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    
Sbjct: 362 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKND 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +   
Sbjct: 541 ISNSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQL 652
              +++ A+E I SI   P+V +IY+G V K+  FGAF+    A++G +        S+ 
Sbjct: 601 DDFKMQKAKERIESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKLRDSKY 660

Query: 653 STERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
            + R   ++                       ++EG  + VK++D D  GKI L +
Sbjct: 661 GSGRFGNSNRYSRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|15595150|ref|NP_212939.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
           B31]
 gi|216264741|ref|ZP_03436733.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi
           156a]
 gi|218249358|ref|YP_002375304.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
 gi|223889336|ref|ZP_03623923.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
 gi|226321270|ref|ZP_03796798.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           Bol26]
 gi|81343023|sp|O51745|PNP_BORBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702621|sp|B7J0Q1|PNP_BORBZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2688743|gb|AAC67149.1| polyribonucleotide nucleotidyltransferase (pnpA) [Borrelia
           burgdorferi B31]
 gi|215981214|gb|EEC22021.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi
           156a]
 gi|218164546|gb|ACK74607.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
 gi|223885257|gb|EEF56360.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
 gi|226233302|gb|EEH32053.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           Bol26]
          Length = 722

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/716 (40%), Positives = 444/716 (62%), Gaps = 35/716 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKL 240
            + MVE  AN++ ED++L AI   H   K +  A  +   +  K+   P+  + K F + 
Sbjct: 183 GITMVEGGANEVGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298
           ++E+   +  DL+ +CF+  K  R K I  L+ K   YFS   + +  NE      F+D 
Sbjct: 242 KDELRDFVYADLKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EKEIVRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    
Sbjct: 362 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKND 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +   
Sbjct: 541 ISNSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQL 652
              +++ A+E I SI   P+V +IY+G V K+  FGAF+    A++G +        S+ 
Sbjct: 601 DDFKMQKAKERIESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKY 660

Query: 653 STERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
            + R   ++                       ++EG  + VK++D D  GKI L +
Sbjct: 661 GSGRFGNSNRYSRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|160892563|ref|ZP_02073353.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
 gi|156865604|gb|EDO59035.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
          Length = 700

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/700 (40%), Positives = 421/700 (60%), Gaps = 16/700 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  T  ++ AG+ L+++ GR+A Q++GA    YG+T VL+T+      +DG DFFPL+V 
Sbjct: 4   EFKTYSMDIAGKTLRVDIGRVAAQANGAAFMHYGDTTVLSTITASEKPRDGIDFFPLSVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YAVGKIPGG+ +RE + +EN +L SR+IDR +RPLF K Y+N+  +   V   D 
Sbjct: 64  YEEKMYAVGKIPGGFNKREGKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVTSVDP 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E  P +V+M+ ++ A  +S +PF GP    QV  I+G++++NP   + D+G L L V+ T
Sbjct: 124 ECRPELVAMLGSAIATAISDVPFCGPCAMTQVGMIDGEFIINPSQKQWDEGDLKLTVAST 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDSKD 236
              V+M+E  AN++ ED +++AI   H+    +IE I+K+ +   K         I  + 
Sbjct: 184 STKVIMIEAGANEIPEDKMIEAIYKAHDVNLSIIEFINKMVEEVGKPKHDYVSCAIPEEL 243

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           F+ ++E ++     ++ V+ F  EK VR + I  +++K    F+   +      I     
Sbjct: 244 FAAMKEIVTPA---EMEVAVFTDEKQVREENIRQIREKFEEAFA--DNEEWLALIPEALY 298

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
             Q K VR ++L  + R DGR    +R ++A+V ++ R HGS++F RG TQ   +VTL  
Sbjct: 299 QYQKKTVRKMILKDRKRPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDIVTLAP 358

Query: 357 REDEQYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
             + Q +D L        +M HYNF   + GE      P RREIGHG LA RA+ PVLP 
Sbjct: 359 LSEIQKIDGLDENVVSKRYMHHYNFPSYSVGETKVSRGPGRREIGHGALAERALLPVLPS 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
             +FPY +R VSE  ES+GS+SMA+ C S ++LM AGVP+   VAGI+ GLV     DD+
Sbjct: 419 VEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKSMVAGISCGLVTGDTDDDY 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+ + +  RL I++
Sbjct: 479 VVLTDIQGLEDFFGDMDFKVTGTYKGITAIQMDIKIHGLTRPIVEEAIARTREARLFIMD 538

Query: 534 -EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             MS  +   R  + EF P++  + I PD+I  VIG  GK I  I+E+TG K++IDDDG 
Sbjct: 539 GVMSSAIPAPRTHVNEFAPKIVQIKIDPDKIGEVIGQRGKTINTIIEETGVKIDIDDDGN 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V +       ++ A  MI+ I +   V   YKG+VVK++D GA V     +DGL+HIS+L
Sbjct: 599 VSVCGVEQESMDKAMNMIKMIVEPLVVGDDYKGKVVKILDCGAIVSLAPNKDGLIHISKL 658

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691
           S +RVAK  DVV  GD V VK++  D+R G+I LS+K V+
Sbjct: 659 SDKRVAKVEDVVNVGDDVVVKVIKIDERAGRISLSLKDVE 698


>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
           MSB8]
 gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
 gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
 gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
          Length = 708

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/690 (42%), Positives = 440/690 (63%), Gaps = 9/690 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L ++ G++A+QS G+ L  +G+TVVLAT        +G DF PLTV +QER YA GK
Sbjct: 10  GRELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAAGK 69

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    P VV + 
Sbjct: 70  IPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPDVVGIF 129

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AAS AL +S +PFEG V G +V Y +GQ++  P  ++ ++G +D+ V+GT+DAV MVE E
Sbjct: 130 AASLALNVSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDAVTMVEGE 189

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMI-K 249
           A +++E+ ++ A+ F H+  K +++   ++      E I +      + L E    ++ K
Sbjct: 190 AKEVTEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEGLVEAFKDLLNK 249

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQAKVVRT 305
           E+L     +  K  R   + + ++++++  + +         +  +  ++ED   K +R 
Sbjct: 250 EELERRILVKVKKEREVALKEYEEQLLNQIAEKLSVTDLEGIKPFVSELYEDAVKKTMRR 309

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   D Q +D+
Sbjct: 310 LIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDT 369

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +FPYT+R+
Sbjct: 370 LLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPYTIRV 429

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  IIL+DI G EDH
Sbjct: 430 VSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDIIGMEDH 489

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL+ M + +S  R  
Sbjct: 490 YGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYETISAPRPH 549

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIE 604
           L ++ P +++  + P+++ +VIG GG+VI+ I++    KV IDD+ G VK+  SS   ++
Sbjct: 550 LSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVGSSEENVD 609

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E+IR I    EV ++ +G+V ++  +G F+     + GL+H S++  + + +    V
Sbjct: 610 KAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVGED-MRQFLKKV 668

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K GDT+ V++++ DD G+++       +NT
Sbjct: 669 KVGDTIKVQVINIDDLGRLQFKRVTEGENT 698


>gi|195941985|ref|ZP_03087367.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
           80a]
 gi|312147830|gb|ADQ30489.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           JD1]
          Length = 716

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/712 (40%), Positives = 442/712 (62%), Gaps = 35/712 (4%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ Y
Sbjct: 1   MKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +
Sbjct: 61  AAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ + + M
Sbjct: 121 VGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKLEEEM 244
           VE  AN++ ED++L AI   H   K +  A  +   +  K+   P+  + K F + ++E+
Sbjct: 181 VEGGANEVGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EFKDEL 239

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQAKV 302
              +  DL+ +CF+  K  R K I  L+ K   YFS   + +  NE      F+D + ++
Sbjct: 240 RDFVYADLKEACFVKGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDFEKEI 299

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  DEQ 
Sbjct: 300 VRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQI 359

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT
Sbjct: 360 MDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDFPYT 418

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSDI G+
Sbjct: 419 IRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGE 478

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V+S S
Sbjct: 479 EDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTVISNS 538

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      +
Sbjct: 539 RVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFK 598

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLSTER 656
           ++ A+E I SI   P+V +IY+G V K+  FGAF+    A++G +        S+  + R
Sbjct: 599 MQKAKERIESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKYGSGR 658

Query: 657 VAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
              ++                       ++EG  + VK++D D  GKI L +
Sbjct: 659 FGNSNRYSRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 710


>gi|281423345|ref|ZP_06254258.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
 gi|281402681|gb|EFB33512.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
          Length = 757

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/714 (40%), Positives = 424/714 (59%), Gaps = 25/714 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++  AASAA+  S +PFE  +   +V  ING+YV++P   +     +DL V+
Sbjct: 121 DGVDQPDALAGFAASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQQMADADMDLMVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E  ++SE  ++ A+       KP+ E   +L+K    +  V    D   
Sbjct: 181 ATKDNIMMVEGEMKEVSEQDLIGALKAAAEAIKPMCELQEELSKELGTD--VKREYDHEI 238

Query: 240 LEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE------ 288
            +E++ + IK +L    +       EK+ R    D +    +  + + HS  +E      
Sbjct: 239 NDEDLREQIKNELYKPVYDINKQALEKHARHDAFDKILADFLEKYDAAHSELSEEDLEEK 298

Query: 289 -GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             E    +ED+    +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T 
Sbjct: 299 HAEATRYYEDVMRDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETM 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++   TLGT+ DE+ VD +       F++HYNF P +TGE        RREIGHG LA R
Sbjct: 359 SLSTCTLGTKLDEKMVDDVLEKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWR 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
            +   +P    +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+
Sbjct: 419 GLKGQIP--EDYPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLI 476

Query: 468 KD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+   D + ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK
Sbjct: 477 KNPGEDKYAILSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAK 536

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
            GR HILN M + +SE R +L    PR+E   IP + I  +IG GGK+I+ + E+TGA +
Sbjct: 537 AGREHILNCMLETISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEETGATI 596

Query: 586 NIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            ID+    G V +++ +   I AA   I++I  VPEV ++Y+G V  +M +G FV     
Sbjct: 597 TIDETDGKGHVTVSAPNKDSINAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPG 656

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           RDGL+HIS++  +R+    +  +KEGD V VKL++ D + GK KLS +V+ +  
Sbjct: 657 RDGLLHISEIDWKRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVLLEKP 710


>gi|145593929|ref|YP_001158226.1| polynucleotide phosphorylase/polyadenylase [Salinispora tropica
           CNB-440]
 gi|187611287|sp|A4X4P8|PNP_SALTO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145303266|gb|ABP53848.1| Polyribonucleotide nucleotidyltransferase [Salinispora tropica
           CNB-440]
          Length = 785

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/704 (39%), Positives = 415/704 (58%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     R  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTRVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEHFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  V+  D      VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   ++ +I+G +V  P  +E  + + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELVRATFDMVVAGRALPDGDVA 199

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA               +E+VV   +       + +  A S+LA++ AK     
Sbjct: 200 IMMVEAEATAHTAKLVADGASAPTEEVVASGLEAAKPAIRELCRAQSELAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D  D   + + ++++ +ED+  +  I  K  R + +D +K + V           E
Sbjct: 260 PVFLDYSD--DVYDAVTELAREDVAEALKIAGKADREEALDRIKARAVEELGPRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ +    +    VR+ +L ++VR+DGR    +R ++A+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAALRSLTKSEVRSRVLREQVRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 MGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  +    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  ALQQA
Sbjct: 497 DEVEGKTRYVTLTDILGAEDAFGDMDFKVAGTQEFVTALQLDTKLDGIPSDVLAAALQQA 556

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL  M   +      + ++ PRV  + IP D+I  VIG  G+ I  I ++TGA+
Sbjct: 557 YEARQTILEVMQAAIEAP-ATMSDYAPRVTTVKIPVDKIGMVIGPKGQTINAIQDETGAE 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + +++    +AA E I  I +  +P+V   + G VVK   FGAF+     
Sbjct: 616 ISIEDDGTIYVGATNGPAAQAAVERINGIANPTLPKVGDRFLGTVVKTAAFGAFISLLPG 675

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HIS++   +RV K  D +  GD V V++ D D RGKI L
Sbjct: 676 RDGLLHISKVGDGKRVEKVEDFLNVGDKVEVEIADIDQRGKIYL 719


>gi|216263697|ref|ZP_03435692.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
 gi|215980541|gb|EEC21362.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
          Length = 722

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/716 (40%), Positives = 442/716 (61%), Gaps = 35/716 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKL 240
            + MVE  AN++SED++L AI   H   K +  A  +   +     K P+  + K F + 
Sbjct: 183 GITMVEGGANEVSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298
           ++E+   I  DL+ +CF+  K  R K I  L+ K   +FS   +    NE      F+D 
Sbjct: 242 KKELRDFIYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L+ K+R DGR    +RDI A+V +L RTHGSSLF RG+TQA+ V TLGT  
Sbjct: 302 EKEIVRNSILNDKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    
Sbjct: 362 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMIPGKND 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSD
Sbjct: 421 FPYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT++GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M+ V
Sbjct: 481 ILGEEDHLGDMDFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +   
Sbjct: 541 ISNSRVGISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQL 652
              +++ A+E I SI   P+V +IY+G V K+  FGAF+     ++G +        S+ 
Sbjct: 601 DDFKMQKAKEKIESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKY 660

Query: 653 STERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
            + R    +                       ++EG  + V+++D D  GKI L +
Sbjct: 661 GSGRFGHGNRYSRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716


>gi|260591852|ref|ZP_05857310.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
           F0319]
 gi|260536136|gb|EEX18753.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
           F0319]
          Length = 751

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/715 (39%), Positives = 430/715 (60%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYAAAGRYPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++  AASAAL  S +P + P    +V  +NG+YV+NP  ++ +   +DL V 
Sbjct: 121 DGIDQPDALAGFAASAALAASDIPIDYPTSEVRVARVNGEYVINPTFEQMKHADMDLMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D   
Sbjct: 181 ATKDNIMMVEGEMDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEI 238

Query: 240 LEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSY-------FSSEHSSW 286
            +E++ + ++++   +C+        +K  R +  + +K   +          S +    
Sbjct: 239 NDEDLREQVRKETYDACYAEAQSGDNDKKHREETYEKIKSDFIEAYDAAHTDLSEDDLEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
              EI   F D+Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHAEIERYFADVQRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSAIFQRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            ++   TLGT+ DE+ VD++       F++HYNF P  TGE        RREIGHG LA 
Sbjct: 359 MSLSTCTLGTKMDEKMVDNVLDKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+   +P  A FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RALKGQIP--ADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   D + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEDKYAVLSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HILN +++ ++E R ++    PR+  + IP + I  VIG GGK+I+ I E+TGA 
Sbjct: 537 KAGREHILNLLTETIAEPRQEMKPQVPRIIQLEIPKEFIGAVIGPGGKIIQQIQEETGAT 596

Query: 585 VNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + I++    G V++++ +   I+AA   I++I  VPE+ ++Y+G V  +M +G FV    
Sbjct: 597 ITIEETEGIGKVQVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS +V+ +  
Sbjct: 657 GKDGLLHISEIDWKRLETVEEAGIKEGDKIKVKLLDIDPKTGKYKLSRRVLLEKP 711


>gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
          Length = 737

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/706 (39%), Positives = 432/706 (61%), Gaps = 19/706 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M D    E E+ GR + +E G++A+QS GA    + ++ +LATV           F PLT
Sbjct: 1   MNDYRVWEREFFGRKIIVEHGKMAKQSHGACFVRFADSAILATVNASEEPLPQAGFVPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +QE+ YA GKIPGG+++RE +P+EN IL +R+IDR IRPLF K   NE QVI+ V+  
Sbjct: 61  VEFQEKFYAAGKIPGGFVKREGKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++ P  + + A+S AL +S +PF+G V G +V Y++G+Y+  P  +E ++  LD+ V+
Sbjct: 121 DPDNPPDTIGIFASSLALNISPIPFDGMVAGVRVGYVDGEYIFFPTSEELEKSELDIVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT++AV MVE EA ++SE+V+L A++  H   K ++E   ++      +   ++  +  +
Sbjct: 181 GTKEAVTMVEGEAKEVSEEVMLKALMKAHEAIKQLVEFQEEIVSEFEVQKWELEVPEPPE 240

Query: 240 --LEEEMSQMIKEDLRVSCFIPEKY--------VRCKQIDDLKKKMVSYFSSEHSSWNEG 289
             +E   S +  +++      P K          R   I+++K+K    +S +    NE 
Sbjct: 241 GFIEAFESLLDDQEIIERMLTPGKKNKGRALKEYRNAIIEEMKEKFTDKWSEDEFVENEH 300

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            +   +E+    ++R  ++++ +RMDGR +  +R I+ ++ +L RTHGS+LF RG+TQ++
Sbjct: 301 FLKEHYEEKVKHLMRRSIVERNLRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSL 360

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
             VTLG   DEQ +D+L       FM+HYNF P +TGEV RM  P RREIGHG LA RA+
Sbjct: 361 ATVTLGAPIDEQIIDTLLEEGSKTFMLHYNFPPFSTGEVKRMRGPGRREIGHGHLAERAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             ++P   +FPYT+R+VSEI ES+GSSSMATVC  SLALM AGVPI + VAG+AMGL+++
Sbjct: 421 KNMIPPEEEFPYTIRVVSEILESNGSSSMATVCSGSLALMAAGVPIKRHVAGVAMGLIQE 480

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            D+ +IL+DI G+EDH G MDFKVAGT  GITA QMD+K+ G+SE IM+ AL QAK  R+
Sbjct: 481 PDETVILTDILGNEDHYGDMDFKVAGTRDGITAFQMDVKVAGVSEEIMLKALYQAKEARM 540

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL+ M + +SE R ++  + P +++MA+P ++I  +IG GGKV++ +     A++ IDD
Sbjct: 541 KILDLMYETISEPRKEISPYAPVIKVMAVPYEKIGEIIGPGGKVVKKLSTDYDARIFIDD 600

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
               VKI  +   ++E    +I ++    +  +++ G + ++  +G FV     + GL+H
Sbjct: 601 VKCQVKIIGNDPEKVEKLMGVINAVISDVKEGQVFDGVISRIEPYGIFVEIAPGKTGLLH 660

Query: 649 ISQLSTERVAKTSDVVK---EGDTVWVKLLDFDDRGKIKLSMKVVD 691
            S+          + +K    G  + V++   D+ G+I+L    V+
Sbjct: 661 SSKFG----GDMKEFIKTNNVGAHLKVEVTAIDNLGRIQLKRYGVE 702


>gi|224533071|ref|ZP_03673676.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           WI91-23]
 gi|224512007|gb|EEF82403.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           WI91-23]
          Length = 722

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/716 (40%), Positives = 444/716 (62%), Gaps = 35/716 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---PIVIDSKDFSKL 240
            + MVE  AN++ ED++L AI   H   K +  A  +   +  K+   P+  + K F + 
Sbjct: 183 GITMVEGGANEVGEDILLSAIDGAHEYIKQICNAQKEFLDIVGKKEKLPLAFEEKIF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDI 298
           ++E+   +  DL+ +CF+  K  R K I  L+ K   YFS   + +  NE      F+D 
Sbjct: 242 KDELRDFVYADLKEACFVRGKLNRDKAITLLRNKSYEYFSSLEKLTDSNESLFHKAFDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR+ +L+  +R DGR    +RDI ++V +L RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EKEIVRSSILNDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    
Sbjct: 362 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKND 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+   VAGIAMGL+ +GD +++LSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKDLMRDALEQARIGRIHILSIMNTV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +   
Sbjct: 541 ISNSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGD 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQL 652
              +++ A+E I SI   P+V +IY+G V K+  FGAF+    A++G +        S+ 
Sbjct: 601 DDFKMQKAKERIESIVREPKVGEIYEGTVKKINSFGAFIELTPAKEGFLSTRLKPRDSKY 660

Query: 653 STERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
            + R   ++                       ++EG  + VK++D D  GKI L +
Sbjct: 661 GSGRFGNSNRYSRFGGGGENIRGNAGLVRPPKLEEGQRIKVKIIDIDKFGKIDLEI 716


>gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera]
          Length = 905

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/707 (39%), Positives = 411/707 (58%), Gaps = 14/707 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E   R +  ETG+IAR ++GAV+ +  ET VL+TV         +DF PLTV+
Sbjct: 5   ETFKEEFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTV-ASSKGDAARDFLPLTVD 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ +A G IP  ++RRE  P E E+L  R+IDR IRPLF   + +E QV+ +V+  D 
Sbjct: 64  YQEKHFAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDG 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P V++  A SAALMLS +P+ GP+   ++  I GQ+++NP +DE     L+L  + T
Sbjct: 124 KQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACT 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +D  LM++++A ++SE  +  A+   H E    +E   +LA    K          S + 
Sbjct: 184 RDKTLMIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDIT 243

Query: 242 EEMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            E  + + E    + F      K+ R + +D + + +      E    +   +  V + +
Sbjct: 244 FEKVRNLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTV 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + +VVR  ++ + +R+DGR    VR +  + G L   HGSSLF RGDTQ +  VTLG   
Sbjct: 304 RKEVVRRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPG 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +DSL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP   +
Sbjct: 364 DAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEE 423

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------- 471
           FPYT+RI SE+  SDGS+SMATVCG S+ALMDAG+P+ + VAGI++GLV + D       
Sbjct: 424 FPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIK 483

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+ IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+   L+ A RGRL I
Sbjct: 484 DYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQI 543

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M + ++  R Q    +PR+  +    D +R ++G  G + R I E+TGA++++ D G
Sbjct: 544 LDRMEQEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVSD-G 602

Query: 592 TVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           T+ + + + + ++  +E +  I     E+  IYKG V  V ++GAFV F G + GL+HIS
Sbjct: 603 TLTVVAKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHIS 662

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +LS E V + SDVV  G  + +  +  D RG IKLS+K      G  
Sbjct: 663 ELSHEPVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLPRPGSD 709


>gi|325268379|ref|ZP_08135011.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
           DSM 16608]
 gi|324989233|gb|EGC21184.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
           DSM 16608]
          Length = 751

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/715 (40%), Positives = 427/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRYPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++  AASAAL  S +P E P    +V  ING+YV++P  ++  +  +DL V 
Sbjct: 121 DSVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D   
Sbjct: 181 ATKDNIMMVEGEMDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEI 238

Query: 240 LEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSY-------FSSEHSSW 286
            +EE+ + ++++   +C+        +K  R +  + +K              S +    
Sbjct: 239 NDEELREQVRKETYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
              EI   F D+Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS+LF RG+T
Sbjct: 299 KHAEIDRYFADVQRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            ++   TLGT+ DE+ +D++       F++HYNF P  TGE        RREIGHG LA 
Sbjct: 359 MSLSTCTLGTKMDEKMIDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+   +P  A FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RALKGQIP--ADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   D + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEDKYAVLSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HILN ++  ++E R ++    PR+  + IP + I  VIG GGK+I+ + E TGA 
Sbjct: 537 KAGREHILNLLTDTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGAV 596

Query: 585 VNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + ID+    G V++++ +   I+AA   I++I  VPE+ +IY+G V  +M +G FV    
Sbjct: 597 ITIDETDGVGKVQVSAPNKESIDAALGKIKAIVAVPEIGEIYEGTVRSIMPYGCFVEILP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    D  +KEGD + VKLLD D + GK KLS +V+ +  
Sbjct: 657 GKDGLLHISEIDWKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVLLEKP 711


>gi|327312938|ref|YP_004328375.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           F0289]
 gi|326944531|gb|AEA20416.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           F0289]
          Length = 751

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/715 (40%), Positives = 427/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRYPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++  AASAAL  S +P E P    +V  ING+YV++P  ++  +  +DL V 
Sbjct: 121 DSVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D   
Sbjct: 181 ATKDNIMMVEGEMDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEI 238

Query: 240 LEEEMSQMIKEDLRVSCFIP------EKYVRCKQIDDLKKKMVSY-------FSSEHSSW 286
            +EE+ + ++++   +C+        +K  R +  + +K              S +    
Sbjct: 239 NDEELREQVRKETYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
              EI   F D+Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS+LF RG+T
Sbjct: 299 KHAEIDRYFADVQRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            ++   TLGT+ DE+ VD++       F++HYNF P  TGE        RREIGHG LA 
Sbjct: 359 MSLSTCTLGTKMDEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+   +P  A FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL
Sbjct: 419 RALKGQIP--ADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   D + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEDKYAVLSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HILN ++  ++E R ++    PR+  + IP + I  VIG GGK+I+ + E TGA 
Sbjct: 537 KAGREHILNLLTDTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGAT 596

Query: 585 VNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + I++    G V++++ +   I+AA   I+SI  VPE+ ++Y+G V  +M +G FV    
Sbjct: 597 ITIEETDGVGKVQVSAPNKDSIDAALGKIKSIVAVPEIGEVYEGTVRSIMPYGCFVEILP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    D  +KEGD + VKLLD D + GK KLS +V+ +  
Sbjct: 657 GKDGLLHISEIDWKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVLLEKP 711


>gi|299142521|ref|ZP_07035652.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
 gi|298575956|gb|EFI47831.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
          Length = 748

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/703 (40%), Positives = 414/703 (58%), Gaps = 24/703 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRTITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE + ++NEIL SR++DR++RPLF   Y  E  V + ++  D    P  ++ 
Sbjct: 63  RFPGGFTKREGKASDNEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVEL 190
            AASAA+  S +PFE  +   +V  ING+YV++P   +     +DL V+ T+D ++MVE 
Sbjct: 123 FAASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQQMADADMDLMVAATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E  ++SE  ++ A+       KP+ E   +L+K    +  V    D    +E++ + IK 
Sbjct: 183 EMKEVSEQDLIGALKAAAEAIKPMCELQEELSKELGTD--VKREYDHEINDEDLREQIKN 240

Query: 251 DLRVSCF-----IPEKYVRCKQIDDLKKKMVSY-------FSSEHSSWNEGEIVSVFEDI 298
           +L    +       EK+ R    D +    +          S E       E    +ED+
Sbjct: 241 ELYKPVYDINKQALEKHARHDAFDKILADFLEKYDAAHNELSEEDLEEKHAEATRYYEDV 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
               +R  +LD+  R+DGR +  +R I  +V  L   HGS++F RG+T ++   TLGT+ 
Sbjct: 301 MRDAMRRCILDEGQRLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKL 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DE+ VD +       F++HYNF P +TGE        RREIGHG LA R +   +P    
Sbjct: 361 DEKMVDDVLEKSYMRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--ED 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIIL 476
           +PYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + IL
Sbjct: 419 YPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAIL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN M 
Sbjct: 479 SDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEQALMQAKAGREHILNCML 538

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTV 593
           + +SE R +L    PR+E   IP + I  +IG GGK+I+ + E TGA + ID+    G V
Sbjct: 539 ETISEPRAELKPQVPRIEAFDIPKEFIGAIIGPGGKIIQQMQEDTGATITIDETDGKGHV 598

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +++ +   I AA   I++I  VPEV ++Y+G V  +M +G FV     RDGL+HIS++ 
Sbjct: 599 TVSAPNKDSINAAMGKIKAIVAVPEVGEVYEGVVRSIMPYGCFVEILPGRDGLLHISEID 658

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +R+    +  +KEGD V VKL++ D + GK KLS +V+ +  
Sbjct: 659 WKRLETVEEAGIKEGDKVKVKLMEIDPKTGKYKLSRRVLLEKP 701


>gi|300779041|ref|ZP_07088899.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
           ATCC 35910]
 gi|300504551|gb|EFK35691.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
           ATCC 35910]
          Length = 751

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/699 (41%), Positives = 448/699 (64%), Gaps = 18/699 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DG+V+   G T++LATVV ++    G DF PLTV+Y+E+ YA G
Sbjct: 15  DGREITIETGKLAKQADGSVVVKCGGTMLLATVVANKEANPGVDFLPLTVDYREKFYAGG 74

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG + RRE++P+++E+L  R++DR +RPLF + +  E QV+I+++ +D E  P  ++ 
Sbjct: 75  RIPGNFFRREAKPSDDEVLTMRLVDRVLRPLFPEDFHAEVQVMISLISYDKEVMPEALAG 134

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLMVEL 190
           +AASAA+ ++ +PF GP+  A+V  I+G+  +NP  +   +  +D+ V  T+D+++MVE 
Sbjct: 135 LAASAAIAITDIPFNGPMSEARVVRIDGELSVNPSYENLLKSDIDIMVGATKDSIVMVEG 194

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E  ++SE  +L+AI F H E +  IEA  +LA    K        +  + +EE+ + + +
Sbjct: 195 EMKEISEQEMLEAINFAHAEIRKQIEAQERLAAKVGKA-FPKREYNHEEHDEEIREKVWK 253

Query: 251 DLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQAKVV 303
           +     +        K  R ++   + ++ ++ ++   E  +     +   + D++ + +
Sbjct: 254 ECYDKVYEVAKTPSNKEERGEKFKAVLEEFLAQYADNEEELARVTPFVKVYYHDVEKEAM 313

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L+  +R+DGRD +T+R I +++  L   HGS++F RG+TQ++  VTLG+ +D   +
Sbjct: 314 RQMILEDNIRLDGRDPQTIRPIWSEIDYLPGAHGSAIFTRGETQSLTAVTLGSVKDANMI 373

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           DS+       F +HYNF P +TGE   +   SRRE+GHG LA+RA+  V+P  A+ PYT+
Sbjct: 374 DSVITQHDERFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALTAVIP--AENPYTI 431

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISG 481
           RIVS+I ES+GSSSMATVC  +LALMDAGV I+KPV+GIAMGL+ D     F +LSDI G
Sbjct: 432 RIVSDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLITDTKSGKFTVLSDILG 491

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+KI G+S +IM  AL QAK GRLHILN++++ +S+
Sbjct: 492 DEDHLGDMDFKVTGTADGITACQMDIKIQGLSMDIMEKALMQAKDGRLHILNKITETISQ 551

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIASS 598
            R  +    P++ +M IP D I  VIG GGK+I+ + + T   + I+   + G ++IA +
Sbjct: 552 PRADVKPHAPKMVVMEIPKDFIGAVIGPGGKIIQQLQKDTDTVIAIEEIGEIGRIEIAGT 611

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +I AA   I  IT VP V ++YKG+VVKVMDFGAFV      +GL+HIS++   R+ 
Sbjct: 612 DREKINAAIAKINEITFVPVVGEVYKGKVVKVMDFGAFVAIAKGTEGLLHISEIEWARLD 671

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K      EGD V VK + +DDR K+KLS KV+     KP
Sbjct: 672 KVP--YAEGDEVEVKFMGYDDRKKMKLSRKVLLPRPPKP 708


>gi|260400856|gb|ACX37015.1| polynucleotide phosphorylase/polyadenylase [Nonomuraea sp. ATCC
           39727]
          Length = 780

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/720 (39%), Positives = 428/720 (59%), Gaps = 39/720 (5%)

Query: 1   MFDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQ 54
           M  VHT E       +  R ++ ETGR+ARQ+ G+ +A    +T+VL+     ++ K+  
Sbjct: 1   MEGVHTAEAVIDNGSFGTRTIRFETGRLARQAAGSAVAYLDSDTMVLSATTASKTPKEQF 60

Query: 55  DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114
           DFFPLTV+ +ER YA G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+
Sbjct: 61  DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVV 120

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GS 173
             VM  + +    VV++ AAS +  L+GLPF GP+ G +V  I+GQ+V  P   E +  +
Sbjct: 121 ATVMALNPDHLYDVVAINAASLSTQLAGLPFSGPIGGVRVALIDGQWVAFPTHPELERAT 180

Query: 174 LDLFVSGT-----QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIE 216
            D+ V+G        A++MVE E+               +E+ V   +       K + E
Sbjct: 181 FDMVVAGRVLDDGDVAIMMVEAESTKDTLKLVAEGAVAPTEETVAQGLEAAKPFIKVLCE 240

Query: 217 AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           A S++A++ AKE    P+ +D +  + +   +   IK +L  +  I  K  R  +++  K
Sbjct: 241 AQSRIARVAAKETAEYPVFLDYQ--ADVYAAVEAAIKTELAAALTIAGKQERENELEKTK 298

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
                    E     E EI + F  +  K++R  ++++ VR+DGR ++ +R +SA+V ++
Sbjct: 299 ALAAEKLLPEFEG-REKEISAAFRSVMKKLMRERVINEGVRIDGRGTKDIRALSAEVHVV 357

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + + TL     EQ +D+L+  +   +M +YNF P +TGE  R+G
Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQVIDTLNPERTKRYMHNYNFPPYSTGETGRVG 417

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S++AL+DAG
Sbjct: 418 SPKRREIGHGALAERALIPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMALLDAG 477

Query: 453 VPISKPVAGIAMGLVKDGD-DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           VP+ + VAGIAMGL+ +GD  ++ L+DI G ED +G MDFKVAGT   ITA+Q+D K+ G
Sbjct: 478 VPLKEMVAGIAMGLIGEGDTHYVTLTDILGAEDAMGDMDFKVAGTKDVITALQLDTKLDG 537

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++  AL+QAK  RL IL+ M + +     ++    PR+  + +P D+I  VIG  G
Sbjct: 538 IPASVLAGALKQAKGARLAILDVMQEAIDSP-AEMNPTAPRIITIKVPVDKIGEVIGPKG 596

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           K+I  I + TGA++ I+DDGT+ I ++     EAAR  I +I    +PEV + Y G VVK
Sbjct: 597 KMINQIQDDTGAEITIEDDGTIYIGATDGPSAEAARSAINAIANPHMPEVGERYLGTVVK 656

Query: 630 VMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +  FGAF+     +DGL+H+SQ+      +R+    DV+  G+ + V++ + D RGK+ L
Sbjct: 657 IAAFGAFISLMPGKDGLLHVSQIRKLHGGKRIENVEDVMSVGEKIQVEIAEIDGRGKLSL 716


>gi|295132795|ref|YP_003583471.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
           SM-A87]
 gi|294980810|gb|ADF51275.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
           SM-A87]
          Length = 731

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/704 (41%), Positives = 441/704 (62%), Gaps = 20/704 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV   +     DFFPLT++Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVRMGDAMLLCTVVSSYTP-TTMDFFPLTLDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGGY +RE+RP+  EIL+ R++DR +RPLF K YK ETQV+I +M HD E  P 
Sbjct: 69  AAAGRFPGGYFKREARPSSEEILVMRLVDRVLRPLFPKDYKFETQVMIQLMSHDPEVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAA+ +S +PFE P+   +V  I+G+ V+NP  ++ ++  LD+ V  + D+V+
Sbjct: 129 ALAGLAASAAIQVSDIPFETPISEVRVARIDGELVINPSFEQLEKADLDMMVGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE E +++SE+ + +AI F H   K   EA ++L K   K    I   + ++ +E++ Q
Sbjct: 189 MVEGEMDEISEEEMAEAIKFAHEAIKVQCEAQTRLRKAAGKT--EIREYEVTEEDEDLKQ 246

Query: 247 MIKEDLRV-----SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            I + +       +     K+ R + I +LK+++++ FS E     +  I S F D   K
Sbjct: 247 KIYDAVYQKAYDVAKQGSTKHERSEAISNLKEEVLAMFSEEELEEKQKLISSYFSDAHKK 306

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR V+L + +R+DGR +  +R I  +V  L   HGSS+F RG+TQA+  VTLGT  +  
Sbjct: 307 AVRDVVLKEGIRLDGRKTTEIRPIWCEVDYLPSPHGSSIFTRGETQALATVTLGTSREAN 366

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            VD  +     +F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P     PY
Sbjct: 367 QVDLPTQQGEENFYLHYNFPPFSTGEAYPIRGTSRREIGHGNLAQRALKGMIPS--DCPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSMATVC  ++ALMDAG+ + KPV+GIAMGL+ DG+DF +LSDI G
Sbjct: 425 TVRVVSEVLESNGSSSMATVCAGTMALMDAGIQLKKPVSGIAMGLISDGEDFAVLSDILG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  ++E
Sbjct: 485 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILEKLTDTIAE 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
               +   +P++    IP D I  +IG GGKVI+ + ++T  ++ I++D     G V+I 
Sbjct: 545 PNANVKAHSPKIITRRIPGDYIGALIGPGGKVIQELQKETKTEIVINEDPVTEEGIVEIL 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLST 654
            +S   I+     I SIT  PE   +Y+ +V+K++DFGA V +      + L+HIS+L+ 
Sbjct: 605 GTSQEGIDKVLAKIDSITFKPEKGSVYEVKVIKLLDFGAVVEYIEAPGNEVLLHISELAW 664

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           ER    +DVV  GD + VK    D + +  K+S K +     +P
Sbjct: 665 ERTNNVTDVVNLGDVIDVKYFGVDPKTRKEKVSRKALLPRPERP 708


>gi|271963663|ref|YP_003337859.1| polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270506838|gb|ACZ85116.1| Polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 773

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/719 (39%), Positives = 426/719 (59%), Gaps = 38/719 (5%)

Query: 1   MFDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQ 54
           M  VH+ E       +  R ++ ETGR+ARQ+ G+ +    + T+VL+     ++ K+  
Sbjct: 1   MEGVHSSEAVIDNGSFGTRTIRFETGRLARQAAGSAVVYLDDETMVLSATTASKNPKENL 60

Query: 55  DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI 114
           DFFPLTV+ +ER YA G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+
Sbjct: 61  DFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVV 120

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GS 173
             +M  + +    VV++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E    +
Sbjct: 121 ATIMALNPDHLYDVVAINAASLSTQLAGLPFSGPIGGVRVALIEGQWVAFPTHSELANAT 180

Query: 174 LDLFVSGT-----QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIE 216
            D+ V+G        A++MVE E+               +E+ V   +       K + E
Sbjct: 181 FDMVVAGRVLEDGDVAIMMVEAESTRDTLKLVADGAVAPTEETVAQGLEASKPFIKVLCE 240

Query: 217 AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           A SK+AK+ AK     P+ +D +D   + E ++  +K +L  +  I  K  R  ++D +K
Sbjct: 241 AQSKIAKVAAKATAEYPLFLDYQD--DVLEAVTGAVKSELAAALTIAGKQERETELDRVK 298

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
              +    SE     E EI + F  +  K++R  ++ + VR+DGR  + +R ++A+V ++
Sbjct: 299 ALALEKVGSEFEG-REKEISAAFRSLTKKLMRERVISEGVRIDGRGVKDIRQLNAEVHVV 357

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + + TL     EQ +D+L+  +   +M +YNF P +TGE  R+G
Sbjct: 358 PRVHGSALFERGETQILGITTLNMLRMEQMIDTLNPERTKRYMHNYNFPPYSTGETGRVG 417

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S++AL+DAG
Sbjct: 418 SPKRREIGHGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMALLDAG 477

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           VP+   VAGIAMGL+ +GD ++ L+DI G ED +G MDFKVAGT   ITA+Q+D K+ GI
Sbjct: 478 VPLKGIVAGIAMGLINEGDQYVTLTDILGAEDAMGDMDFKVAGTKDVITALQLDTKLDGI 537

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +++  AL+QAK  RL I++ M + +     ++    PR+  + +P D+I  VIG  GK
Sbjct: 538 PASVLAAALKQAKGARLAIIDVMQEAIDSP-AEMNATAPRIITIKVPVDKIGEVIGPKGK 596

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKV 630
           +I  I + TGA++ I+DDGT+ I ++     EAAR  I +I    +PEV + Y G VVK+
Sbjct: 597 MINQIQDDTGAEITIEDDGTIYIGATDGPSAEAARSAINAIANPHMPEVGERYLGTVVKI 656

Query: 631 MDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             FGAF+     +DGL+H+SQ+      +R+    DV+  G+ V V++ + D RGK+ L
Sbjct: 657 AAFGAFISLMPGKDGLLHVSQIRKLHGGKRIENVEDVMNVGEKVQVEIAEIDSRGKLSL 715


>gi|326382957|ref|ZP_08204647.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198547|gb|EGD55731.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 750

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/714 (40%), Positives = 417/714 (58%), Gaps = 43/714 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R +  ETGR+A Q+ G+V+A   E T++L+T    ++ K+  DFFPLTV+ +ER YA
Sbjct: 24  FGTRTITFETGRLALQAAGSVVAYLDEGTMILSTTTASKNPKEHFDFFPLTVDVEERMYA 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q++  V+  D +    VV
Sbjct: 84  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVETVLSLDPKDLYDVV 143

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDEDQGS-LDLFVSGT- 181
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +G+  D+ V+G  
Sbjct: 144 AINAASASTQIAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVVAGRL 203

Query: 182 ---QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
                A++MVE EA               SE VV + +         + EA  +LA   +
Sbjct: 204 VDGDVAIMMVEAEATDNVLALIADGATAPSEAVVAEGLEAAKPFIATLCEAQKQLAAAAS 263

Query: 227 KE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           KE    P+    KD +   E +++     L  +  I +K  R    D LK  ++      
Sbjct: 264 KETRDFPLFPPYKDDAY--EAVAEFATARLGEAMSIADKQERDGATDALKGDVLEALGER 321

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
                EGE+ + +  +  K+VR  +L    R+DGR    +R +SA+VG++ R HGS+LF 
Sbjct: 322 FEG-REGELGAAYRSLTKKLVRQRILTDHFRIDGRGITDIRSLSAEVGIIPRAHGSALFE 380

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG
Sbjct: 381 RGETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 440

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGI
Sbjct: 441 ALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTISLLNAGVPLKAPVAGI 500

Query: 463 AMGLVKD--------GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           AMGLV D           ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  
Sbjct: 501 AMGLVSDEVTIDGKTETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 560

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            ++  AL QAK+ RL IL+ +++ + E   ++  + PR+  + IP D+I  +IG  GK I
Sbjct: 561 KVLAGALSQAKQARLTILDVLAEAIDEP-DEMSPYAPRITTIKIPMDKIGELIGPKGKTI 619

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMD 632
            GI E+TGA ++I+DDGTV I ++     +AA + + +I    +P+V + + G VVK   
Sbjct: 620 NGITEETGANISIEDDGTVFIGAADGPSAQAAIDKVNAIANPQLPKVGERFLGTVVKTAA 679

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FGAFV     RDGLVHIS+L   +R+ K  DVVK GD + V++ D D+RGKI L
Sbjct: 680 FGAFVSLLPGRDGLVHISKLGNGKRIGKVEDVVKVGDKLQVEIADIDERGKISL 733


>gi|225011625|ref|ZP_03702063.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           MS024-2A]
 gi|225004128|gb|EEG42100.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           MS024-2A]
          Length = 709

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/707 (40%), Positives = 423/707 (59%), Gaps = 16/707 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
              T EI +  GR + +ETG++A+Q+DG+V+   G+ ++LAT V  R      DF PLTV
Sbjct: 4   KTFTQEIRFEDGRTITIETGKLAKQADGSVVVRMGDCMLLATAVSARKASP-VDFLPLTV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A G+ PGG+ +RE+RP++NE+L  R++DR +RPLF K Y  ETQV+I +M HD
Sbjct: 63  DYREKFAAAGRFPGGFFKREARPSDNEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHD 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
               P  ++ +AAS A+ LS +PFE P+   +V  ++G +++NP  ++ D   +D+ +  
Sbjct: 123 ENVMPDALAGLAASTAIQLSDIPFEYPISEVRVARVDGMFIVNPSREQLDASDIDIMIGA 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           + D+V MVE E +++SE+ +LDAI FGH   K  I+A   LA+   K+ +    ++    
Sbjct: 183 SADSVAMVEGEFDEISEEEMLDAISFGHEAIKDQIKAQIALAEAVGKKQVRTYEEEDKDD 242

Query: 240 -LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            LE+E+     +     +     K  R +Q  ++K+   + FS E        I      
Sbjct: 243 SLEKEIHDATYQKYYDIAKKGLSKAERSEQFSEVKEASKTSFSEEDLEEKGELISRYNNS 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            Q K VR ++L++ +R+DGR +  +R I  +V  L  THGS+LF RG+TQA+   TLGT 
Sbjct: 303 AQKKAVRDLVLEEGIRLDGRKTTDIRPIWCEVDYLPSTHGSALFTRGETQALATTTLGTS 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            +   +DS S      F +HYNF P  TGE   +   SRRE+GHG LA+RA+  V+P   
Sbjct: 363 REANMIDSPSHQGEETFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKKVMP--D 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
             PYT+RIVSE+ ES+GSSSMATVC  ++ALMDAGV I KPV+GIAMGL+ DGD F +LS
Sbjct: 421 DCPYTVRIVSEVLESNGSSSMATVCAGTMALMDAGVKIKKPVSGIAMGLITDGDRFAVLS 480

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI GDEDHLG MDFKV GT  GITA QMD+KI G+  +IM  AL QA+ GRLHIL+ + +
Sbjct: 481 DILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLRFDIMTQALNQARDGRLHILDHLIE 540

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GT 592
            ++     +    P++    +P + I  +IG GGKVI+ + + +G  + I++D     G 
Sbjct: 541 TIATPNEDVKAHAPKMITRRVPNEFIGAMIGPGGKVIQELQKVSGCTIVINEDPVTEEGI 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHIS 650
           ++I  +S   I      I S+T  P V   Y+ +V+K++DFGA V +      + L+H+S
Sbjct: 601 IEILGTSPEGIAMVEAKIDSVTFKPIVGNTYQVKVIKMLDFGAVVEYIDAPGNEVLLHVS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           +L+ ER     DVV  GDT+ VK    D R +  K+S K +     K
Sbjct: 661 ELAWERTENVGDVVSMGDTLEVKYFGIDSRTRKEKVSRKALLPRPEK 707


>gi|227538513|ref|ZP_03968562.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241432|gb|EEI91447.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 729

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/695 (42%), Positives = 431/695 (62%), Gaps = 9/695 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G  ++L TG++A+Q+DG+V+   G+T++LATVV  R  K G DF PL+V+YQE+  A G
Sbjct: 14  NGTQIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPGG+LRRE+R ++ E+LISR++DR++RPLF + Y  +TQV+I+++  D +  P  ++ 
Sbjct: 74  RIPGGFLRREARLSDYEVLISRLVDRALRPLFPENYHADTQVMISLISADKDIMPDALAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVEL 190
           +AASAA+ +S +PF GP+   +V  I+GQ V+NP+L + +  +L+  V+G+   + MVE 
Sbjct: 134 LAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATLEFIVAGSAQDIGMVEG 193

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVID-SKDFSKLEEEMSQMI 248
           EAN++SE  +++AI F H   K  I A  +LA +         +      +L E +    
Sbjct: 194 EANEISETEMVEAIAFAHEAIKKQIAAQVELANLVGATTKREYNHEPSNPELREAIFAAT 253

Query: 249 KEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            + +   +     K+ R ++  ++ ++       E     +      F D+Q   VR ++
Sbjct: 254 YDKVYAIAKSGSTKHERGEKFAEIGEEFFVTLGEEIDDDTKFLAKKYFHDVQYDAVRNLV 313

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           LD+ +R+DGRD  TVR I ++V  L   HGS++F RG+TQ++  VTLG ++DEQ +D   
Sbjct: 314 LDEGIRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAF 373

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
               N F++HYNF   +TGEV     P RRE+GHG LA R++  VLP  A+ PYT+R+VS
Sbjct: 374 INGYNKFILHYNFPAFSTGEVRPNRGPGRREVGHGNLAMRSLKQVLPADAENPYTIRVVS 433

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDH 485
           +I ES+GSSSMATVC  +LALMDAGV +  PV+GIAMGL+ D     + ILSDI GDEDH
Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKLKAPVSGIAMGLITDEKTGKYAILSDILGDEDH 493

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           LG MDFKV GT  GI A QMD+KI G+   ++  AL QAK  RLHIL EM+K +S  R  
Sbjct: 494 LGDMDFKVTGTSKGIVACQMDLKINGLKWEVLTQALDQAKEARLHILGEMAKTISAPRED 553

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIASSSLAE 602
                PR+  + I  + I  VIG GGK+I+ +  +TGA ++I++    G V+I + +   
Sbjct: 554 YKPHAPRIIQIIIDKEFIGAVIGPGGKIIQEMQRETGATISIEEVDNKGIVQIFADNKTA 613

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A   IR+I   PE+   Y+G+V  +M FGAFV     +DGL+HIS++  +R      
Sbjct: 614 IDEATARIRAIAAKPEIGATYEGKVKSIMPFGAFVEIMPGKDGLLHISEIDWKRYETMDG 673

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           + KEGD V VKLLD D +GK+KLS K +     + 
Sbjct: 674 IFKEGDKVTVKLLDVDKQGKMKLSRKALLPRPPRE 708


>gi|323343826|ref|ZP_08084053.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
           33269]
 gi|323095645|gb|EFZ38219.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
           33269]
          Length = 791

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/715 (39%), Positives = 429/715 (60%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE + +++EIL SR++DR++RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKASDSEILTSRLVDRALRPLFPSNYHAEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++  AASAA+  S +PF+GP+   ++  ING+YV++P   +  +  +D+ V 
Sbjct: 121 DGVDQPDALAGFAASAAMACSDIPFDGPISEVRIARINGEYVVDPTFQQMKEADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E N++SE  ++DA+    +  KP+ +  ++L+K    +  V        
Sbjct: 181 ATKDNIMMVEGEMNEVSEQDLIDALKVAADAIKPMCDLQTELSKEFGTD--VKREYCHEV 238

Query: 240 LEEEMSQMIKEDLRV-SCFIP----EKYVRCKQIDDLKKKMVSY--------FSSEHSSW 286
            +EE+ + I ++L   +  I     +K+ R    D+L    +           S++    
Sbjct: 239 NDEELREQINKELYQPAYDITKQALDKHARQDAFDELITNFLEKYDAAHAESLSADELEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
              E    +ED+    +R  +LD+  R+DGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHAEATRYYEDVMRDAMRRCVLDEGKRLDGRKTDEIRPIWCEVSALPMPHGSAIFQRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            ++   TLGT+ DE+ VD +       F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 MSLSTCTLGTKMDEKLVDDVLEKGYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           R +   +P  A FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP++KPV+GIAMGL
Sbjct: 419 RGLKGQIP--ADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMAKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   + + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEEKYAVLSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR +IL +M + +SE R +L    PR+    IP + I  VIG GGK+I+ + E TGA 
Sbjct: 537 KAGREYILGKMMETISEPRTELKPQVPRIVAFEIPKEFIGAVIGPGGKIIQQMQEDTGAT 596

Query: 585 VNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + ID+    G V++++     I+AA   I+SI  VPEV ++Y+G V  VM +G FV    
Sbjct: 597 ITIDEVDGVGKVQVSAPDKDAIDAALAKIKSIVAVPEVGEVYEGTVRSVMPYGCFVEIMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    +  +KEGD + VKL++ D + GK KLS +V+    
Sbjct: 657 GKDGLLHISEIDWKRLETVEEAGIKEGDKIQVKLMEIDPKTGKYKLSHRVLMPKP 711


>gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
 gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
          Length = 713

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/709 (39%), Positives = 437/709 (61%), Gaps = 15/709 (2%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  I    GR + +ETG++A+Q+DG+V+   G+T++LATV   +    G DF PL+
Sbjct: 1   MNVVTKTITLGDGRTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+L+RE R ++ EIL+SR++DR++RPLF   +  ET V + ++  
Sbjct: 61  VDYKEKYAAFGRFPGGFLKREGRASDYEILVSRLVDRALRPLFPDDFHAETFVNVMLVSS 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D E  P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP   +     L++ V+
Sbjct: 121 DGEDMPDALAGLAASAALAVSDVPFNGPISEVRVARIDGQFVINPTFAQLATADLEIMVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDF 237
            T D ++MVE E  ++SE+V+L+A+   H   K   +   +L +   K    +    ++ 
Sbjct: 181 ATIDNIMMVEGEMKEVSEEVLLEAMKVAHEAIKVHCQVQLELMEAVGKTVKRVYCHEEND 240

Query: 238 SKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             L++++     + +    +    +K+ R      +K + ++    E ++  +G I   +
Sbjct: 241 EDLKKDIWAKTYDKVYAVAASCNTDKHSRVDNFKAIKDEYIAALEPEVATEKKGLIGKYY 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +++ + +R  +LD+  R+DGR +  +R I ++V  L   HGS++F RG+TQ++  VTLG
Sbjct: 301 HEVEKEAMRRSILDEGKRLDGRKTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T+ DE+ VD      +  F++HYNF P +TGE        RRE+GHG LA RA+  ++P 
Sbjct: 361 TKMDEKLVDDALFKGKERFLLHYNFPPFSTGEAKASRGVGRREVGHGNLALRALKNMIP- 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
              +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+ +  G +F
Sbjct: 420 -ENYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISENKGKNF 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+HIL 
Sbjct: 479 AVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILETALNQAKAGRMHILG 538

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DD 590
           ++ + L   R  +    PR+ +M IP + I  VIG GGK+I+ +  +TGA + I+   D 
Sbjct: 539 KIQETLEAPREDMKPNAPRIIVMMIPKEMIGAVIGPGGKIIQNMQVETGAVITIEEVGDQ 598

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V+IA+++ A I+AA   I+ I  +PE+ + Y  +V  VM +GAFV F   ++GL+HIS
Sbjct: 599 GRVEIAANNKAAIDAAIAKIKGIVAIPEIGETYPSKVKSVMPYGAFVEFMPGKEGLLHIS 658

Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           ++  +R+       +KEGD + VKLL+ D + GK KLS K +     + 
Sbjct: 659 EIDWKRIETMDQAGIKEGDMIDVKLLEIDQKTGKFKLSRKALLPRPPRE 707


>gi|309812542|ref|ZP_07706290.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Dermacoccus sp. Ellin185]
 gi|308433520|gb|EFP57404.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Dermacoccus sp. Ellin185]
          Length = 826

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/709 (40%), Positives = 427/709 (60%), Gaps = 37/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q++GAV+A   + T +L+T    +  K+  DFFPLTV+ +ER+YA
Sbjct: 18  FGTRTVRFETGRLAKQANGAVMAYLDDDTCLLSTTTASKQPKEHFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV+I V+  + +    V+
Sbjct: 78  AGKIPGSFFRREGRPSTDAILTCRLIDRPLRPAFKKGLRNEVQVVITVLAQNPDVQYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++  ASA+  +SGLPF GP+ G ++  I+GQ+V  P   + ++ + D+ V+G       A
Sbjct: 138 AINGASASTQISGLPFTGPIGGVRISLIDGQWVAFPNFSDIERSAFDMVVAGRIVGDDVA 197

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE E+ +             +E+VV + +       + + EA  +LAK  AKE    
Sbjct: 198 IMMVEAESTESTWNLVKNGTQAPTEEVVAEGLEAAKKFIRVLCEAQMELAKQAAKEVQDF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287
           P+ +D +D   + E +++   +    +  I  K  R  ++D++K  + +  + E   +  
Sbjct: 258 PVFLDYQD--DVYEAVAKDGTDQTAAAMTIAGKAERESKLDEIKDALKAELAGEGKPFEG 315

Query: 288 -EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ + F  +Q ++VR  +L  KVR+DGR    +R +SA+V +L R HGS++F RG+T
Sbjct: 316 RESEVSAAFRSLQKQLVRERILRDKVRIDGRGLADIRALSAEVEVLPRVHGSAIFERGET 375

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +DSLS   R  +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 376 QIMGVTTLNMLRMEQQIDSLSPRTRKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 435

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL
Sbjct: 436 RALMPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 495

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           V    D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL 
Sbjct: 496 VSAEIDGETQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPAQVLAGALT 555

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++  F PRV  + IP D+I  VIG  GK+I  I E TG
Sbjct: 556 QARDARLHILDVMNEAIDAP-DEMSPFAPRVLAVKIPVDKIGEVIGPKGKMINQIQEDTG 614

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A ++I+DDGTV I ++     EAAR  + +I    +PEV + + G VVK   FGAFV   
Sbjct: 615 ADLSIEDDGTVYIGATDGPSAEAARNAVNAIANPQMPEVGERFLGTVVKTTTFGAFVSLL 674

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HIS++      +R+    DV+K G  V V+L + D RGK+ L
Sbjct: 675 PGKDGLLHISEVRKLVGGKRIDAVEDVLKIGRKVQVELKEIDPRGKLSL 723


>gi|187918659|ref|YP_001884225.1| polynucleotide phosphorylase/polyadenylase [Borrelia hermsii DAH]
 gi|119861507|gb|AAX17302.1| polyribonucleotide nucleotidyltransferase [Borrelia hermsii DAH]
          Length = 727

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/715 (41%), Positives = 444/715 (62%), Gaps = 35/715 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             + ++     L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y 
Sbjct: 13  KILRLKVGREDLILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYN 72

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  +
Sbjct: 73  EKYYAAGKIPGGFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMN 132

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +V M AA AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D
Sbjct: 133 PPDIVGMNAAFAAVFLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILDIVVAGSLD 192

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD-FSKLE 241
            + MVE  AN++SE+V+L AI   +   K +     +   +   +E + +  ++   + +
Sbjct: 193 GITMVEGGANEVSEEVLLSAIDKAYEYIKQICNLQKEFVSIIGEREKLPLAYEEGVFEFK 252

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
           +E+  +I  +L+ +CF+  K  R K I  +K+K   +FSS  + +  NE      F+D +
Sbjct: 253 DELKNLIYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSISQVNEDNEFLFYKAFDDFE 312

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+  +R DGR S  +RDI A+V LL+RTHGSSLF RG+TQA+ V TLGT  D
Sbjct: 313 REIVRKSILENNLRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSID 372

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RRE+GHG LA+R++  +LP+   F
Sbjct: 373 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREVGHGHLAQRSLEAMLPKKDDF 431

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ DGD +++LSDI
Sbjct: 432 PYTIRVVSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSDI 491

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V+
Sbjct: 492 LGEEDHLGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDSVI 551

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S SR  +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  + 
Sbjct: 552 SRSRDDISVNAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTD 611

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             +++ A+  I SI   P++ +IY G V K+  FGAF+     ++G +  S  +  R  +
Sbjct: 612 SLKMQKAKAKIESIVREPKIGEIYDGIVKKINSFGAFIELTPIKEGFL--SNRARSRDDR 669

Query: 660 TSDV---------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
             D+                           ++EG  V VK+ D D  GKI+L +
Sbjct: 670 YGDMRHSRYGSGRHSRYGRDNRNTFGMNPPRLEEGQIVKVKISDIDKFGKIELEL 724


>gi|331698425|ref|YP_004334664.1| polyribonucleotide nucleotidyltransferase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953114|gb|AEA26811.1| Polyribonucleotide nucleotidyltransferase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 750

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/702 (40%), Positives = 413/702 (58%), Gaps = 29/702 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 21  FGTRTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQPKEQFDFFPLTVDVEERMYA 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           +GKIPG + RRE RP  + IL  R+IDR +RP F    +NE Q+++ V+  D       +
Sbjct: 81  IGKIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTVLSLDPRDPYDAL 140

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AASA+  L+GLPF GP+ G +V  I+GQ+V  P+ ++ Q    D+ V+G       A
Sbjct: 141 AINAASASTQLAGLPFSGPIGGVRVALIDGQWVAFPQYEDLQRAVFDMVVAGRIVGDDVA 200

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKEPIVI 232
           ++MVE EA   + ++V           +  G    KP I     A  +LA + AK     
Sbjct: 201 IMMVEAEATTETVELVAGGAQAPTEQVVAQGLEAAKPFIRSLCVAQQQLADVAAKPTGSF 260

Query: 233 DSKDF--SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            +         E +     +DL  +  I  K  R  +ID++K  +++    +     E E
Sbjct: 261 PTYPAYQPDAFEAVEAAASDDLAAALTIAGKQEREARIDEVKAGVLASLGEKFEG-REKE 319

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           + + F  +  K+VR  +L  +VR+DGR    +R +SA+V ++ R HGS+LF RG+TQ + 
Sbjct: 320 LGAAFRSLNKKLVRRRILTDQVRIDGRGLTDIRPLSAEVEVVPRAHGSALFERGETQIMG 379

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TL     EQ +DSL       ++ HYNF P +TGE  R+G+P RREIGHG LA RA+ 
Sbjct: 380 VTTLNMLRMEQQIDSLGPETHKRYLHHYNFPPYSTGETGRVGSPKRREIGHGALAERALL 439

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGLV D 
Sbjct: 440 PVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDE 499

Query: 471 DD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
            D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL QAK 
Sbjct: 500 VDGKATYVALTDILGAEDAFGDMDFKVAGTSDFVTALQLDTKLDGIPSEVLAAALNQAKD 559

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            RL IL  + + +     ++  + PRV  + +P D+I  VIG  GK+I  I EQTGA ++
Sbjct: 560 ARLTILEVLGEAIDGP-DEMSTYAPRVTAIKVPVDKIGEVIGPKGKMINSITEQTGADIS 618

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           I+DDGT+ + ++     EAA  MI +I    +P++ + + G VVK   FGAFV     +D
Sbjct: 619 IEDDGTIYVGAADGPSAEAAIGMINAIANPQLPKIGERFLGTVVKTAAFGAFVSLVPGKD 678

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GLVHIS+L   +R+ K  DVVK GD + V++ D D+RGKI L
Sbjct: 679 GLVHISKLGNGKRIGKVEDVVKVGDKLRVEVTDIDNRGKISL 720


>gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila
           RKU-1]
 gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila
           RKU-1]
          Length = 708

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/690 (42%), Positives = 440/690 (63%), Gaps = 9/690 (1%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           GR L ++ G++A+QS G+ L  +G+TVVLAT        +G DF PLTV +QER YA GK
Sbjct: 10  GRELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAAGK 69

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    P VV + 
Sbjct: 70  IPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPDVVGIF 129

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
           AAS AL +S +PFEG V G +V Y +GQ++  P  ++ ++G +D+ V+GT+DAV MVE E
Sbjct: 130 AASLALNVSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTKDAVTMVEGE 189

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMI-K 249
           A +++E+ ++ A+ F H+  K +++   ++      E I +      + L E    ++ K
Sbjct: 190 AKEVAEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEGLVEAFKDLLNK 249

Query: 250 EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HSSWNEGEIVSVFEDIQAKVVRT 305
           E+L     +  K  R   + + ++++++  + +         +  +  ++ED   K +R 
Sbjct: 250 EELERRILVKVKKEREVALKEYEEQLLNQIAEKLSVTDLEGIKPFVSELYEDAVKKTMRR 309

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   D Q +D+
Sbjct: 310 LIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDT 369

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +FPYT+R+
Sbjct: 370 LLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPYTIRV 429

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  IIL+DI G EDH
Sbjct: 430 VSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDIIGMEDH 489

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL+ M + +S  R  
Sbjct: 490 YGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMYETISAPRPH 549

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIE 604
           L ++ P +++  + P+++ +VIG GG+VI+ I++    KV IDD+ G VK+  SS   ++
Sbjct: 550 LSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVGSSEENVD 609

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E+IR I    EV ++ +G+V ++  +G F+     + GL+H S++  + + +    V
Sbjct: 610 KAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVGED-MRQFLKKV 668

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           K GDT+ V++++ DD G+++       +NT
Sbjct: 669 KVGDTIKVQVINIDDLGRLQFKRVTEGENT 698


>gi|256827187|ref|YP_003151146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Cryptobacterium curtum DSM 15641]
 gi|256583330|gb|ACU94464.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Cryptobacterium curtum DSM 15641]
          Length = 742

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/690 (43%), Positives = 428/690 (62%), Gaps = 5/690 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
                 E E  G+  +LETG +A+Q+ GAVL T GET  L T V  +  KD  DFFPLTV
Sbjct: 1   MKKVVEEFELYGKSYRLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKD-YDFFPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           ++ E+ YAVG+IPGGYL+RE + ++   L +RMIDR IRP F   +K E  ++      D
Sbjct: 60  DFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVAD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRL-DEDQGSLDLFV 178
            ++ P  + +  ASAAL+  G PF+GP    ++      G++++NP   ++++  L+L +
Sbjct: 120 GQNPPDCICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTI 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT D + MVE  AN++SE+ +L A+ FG        +A  +        P+        
Sbjct: 180 AGTADYISMVEAGANEVSEEDMLAAMNFGQEAIAAFCDAQQRFLDQLDCTPLEYAIHTAD 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY-FSSEHSSWNEGEIVSVFED 297
               E     + ++  +    +K  R  +++ LK  +    FS E  +    +I +  + 
Sbjct: 240 PRIAERVNAHEAEMAAALRDADKLSRIAKVEALKAAVRESDFSDEERAAWASDIAAALKA 299

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ + +R ++++   R+DGR ++ +R +  + G L R HGS LF RG TQA+ V TLGT 
Sbjct: 300 LEKRAMRVMIIETGERVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTL 359

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D++  ++   +M  YNF P  TGEV R+GAP RREIGHG LA RA+ PVLP   
Sbjct: 360 REGQRLDTIDPSEGKRYMHQYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVLPSED 419

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
            FPY +R+VSEI ES+GSSSMA+ CGS+LALMDAGVPI+ PV+GIAMGL+K+GD+ +ILS
Sbjct: 420 DFPYAIRVVSEILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDETVILS 479

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKV GT  GITA+QMD K  G+S  I+  AL QAK GR  IL+ M +
Sbjct: 480 DIQGLEDFLGDMDFKVTGTARGITALQMDNKARGLSTEILGRALAQAKEGRAFILSAMLE 539

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +SE R +L EF PR+E + IP ++IR+VIG GGKVIRG+ ++TGA + +++DGTV IA+
Sbjct: 540 QISEPRAELSEFAPRIETIKIPVEKIRDVIGTGGKVIRGLQDETGATIEVEEDGTVHIAA 599

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                 EAA++ I  I   PEV +IY G+VV + DFGAFV     +DGL+HIS+++  RV
Sbjct: 600 VEGPAGEAAKQAILDIIKEPEVGEIYDGEVVGIKDFGAFVKLTAGKDGLLHISRMANGRV 659

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            +  DV+  GD V V++++  D GKI L  
Sbjct: 660 GQVEDVLNLGDAVKVEVIEVGDNGKISLDR 689


>gi|294675265|ref|YP_003575881.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
           23]
 gi|294472822|gb|ADE82211.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
           23]
          Length = 792

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/715 (39%), Positives = 428/715 (59%), Gaps = 25/715 (3%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++ A GR + +ETG++A+Q+DG+V+     TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTLQLADGRTITIETGKVAKQTDGSVVLRMNNTVLLATVCAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE + ++NEIL SR++DR +RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKASDNEILTSRLVDRVLRPLFPSNYHAEVFVNVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D    P  ++  AASAAL  S +PFE P+   +V  +NG+YV++P  ++ +   +D+ V 
Sbjct: 121 DGIDQPDALAGFAASAALACSDIPFECPISEVRVARVNGEYVIDPTFEQMKNADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            + + ++MVE E  ++SE  ++ A+       KP+ E  ++L+K   K+  V    D   
Sbjct: 181 ASAENIMMVEGEMKEVSEQDMIGALKAAMAAIKPMCELQAELSKELGKD--VKREYDHEV 238

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYV-----RCKQIDDLKKKMVSYFSSEHSSWNEGEIVS- 293
            +EE+ + + ++L    +   K       R    + +       +++EH+   E E+   
Sbjct: 239 NDEELRERMSKELYQPAYDVTKQALPKQDRADAFEKILTDFKEKYAAEHADLTEDELEEK 298

Query: 294 ------VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
                  + D++   +R  +LD+ +R+DGR ++ +R I  +V  L   HGSS+F RG+TQ
Sbjct: 299 YAMMERYYHDVERDAMRRCILDEGIRLDGRKTDEIRPIWCEVSPLPMPHGSSIFTRGETQ 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++   TLGT+ DE+ VD +       F++HYNF P  TGE        RREIGHG LA R
Sbjct: 359 SLSTCTLGTKLDEKMVDDVLEHGYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWR 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
            +   +P    FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+
Sbjct: 419 GLKGQIP--EDFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLI 476

Query: 468 KD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+   D + +LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S +I+  AL QAK
Sbjct: 477 KNPGEDKYAVLSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFDILEKALMQAK 536

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
            GR HIL  ++  ++E R ++    PR+  M IP + I  VIG GGK+I+ + E TGA +
Sbjct: 537 AGREHILKCLTDTIAEPRAEMKPQVPRIVQMEIPKEFIGAVIGPGGKIIQQMQEDTGATI 596

Query: 586 NIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            ID+    G V++++ +   I+AA   I++I  +PEV ++Y G V  +M +G FV     
Sbjct: 597 TIDEVDGVGKVQVSAPNKESIDAAIGKIKAIVAIPEVGEVYDGVVRSIMPYGCFVEIMPG 656

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           +DGL+HIS++  +R+    +  +KEGD + VKLL+ D + GK KLS +V+ +   
Sbjct: 657 KDGLLHISEIDWKRLETVEEAGIKEGDHIQVKLLEIDPKTGKYKLSHRVLIEKPA 711


>gi|257096732|sp|B2S1E9|PNP_BORHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 717

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/715 (41%), Positives = 444/715 (62%), Gaps = 35/715 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             + ++     L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y 
Sbjct: 3   KILRLKVGREDLILETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +V M AA AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D
Sbjct: 123 PPDIVGMNAAFAAVFLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILDIVVAGSLD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD-FSKLE 241
            + MVE  AN++SE+V+L AI   +   K +     +   +   +E + +  ++   + +
Sbjct: 183 GITMVEGGANEVSEEVLLSAIDKAYEYIKQICNLQKEFVSIIGEREKLPLAYEEGVFEFK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDIQ 299
           +E+  +I  +L+ +CF+  K  R K I  +K+K   +FSS  + +  NE      F+D +
Sbjct: 243 DELKNLIYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSISQVNEDNEFLFYKAFDDFE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+  +R DGR S  +RDI A+V LL+RTHGSSLF RG+TQA+ V TLGT  D
Sbjct: 303 REIVRKSILENNLRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSID 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RRE+GHG LA+R++  +LP+   F
Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREVGHGHLAQRSLEAMLPKKDDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ DGD +++LSDI
Sbjct: 422 PYTIRVVSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISDGDKYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V+
Sbjct: 482 LGEEDHLGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALEQARIGRMHILSIMDSVI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S SR  +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  + 
Sbjct: 542 SRSRDDISVNAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGTD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             +++ A+  I SI   P++ +IY G V K+  FGAF+     ++G +  S  +  R  +
Sbjct: 602 SLKMQKAKAKIESIVREPKIGEIYDGIVKKINSFGAFIELTPIKEGFL--SNRARSRDDR 659

Query: 660 TSDV---------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
             D+                           ++EG  V VK+ D D  GKI+L +
Sbjct: 660 YGDMRHSRYGSGRHSRYGRDNRNTFGMNPPRLEEGQIVKVKISDIDKFGKIELEL 714


>gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
 gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
          Length = 707

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/695 (41%), Positives = 442/695 (63%), Gaps = 11/695 (1%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           E  GR L ++ G++A+QS GAVL  +G+T VLAT      + +G DF PLTV +QER YA
Sbjct: 7   EILGRELVVQHGKVAKQSSGAVLVRFGDTAVLATANISDKVIEGIDFVPLTVEFQERFYA 66

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPGG+++RE +P+E+ IL +R+IDR IRPLF K  +NE QVI+ V+  D    P VV
Sbjct: 67  AGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEIQVIVTVLSADPNVPPDVV 126

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMV 188
            + A S AL +S +PFEG V G ++ Y +GQ++  P  ++ ++G +D+ V+GT+DAV MV
Sbjct: 127 GIFAVSLALNVSKIPFEGIVAGIRIGYRDGQFIAFPTEEDIEKGLMDITVAGTKDAVTMV 186

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQM 247
           E EA ++SE+ ++ A+ F H+  K +++   ++      E I +   +  + L E  + +
Sbjct: 187 EGEAKEVSEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPEPPEGLVETFNSL 246

Query: 248 I-KEDLRVSCFIPEKYVRCKQIDDLKKKMV----SYFSSEHSSWNEGEIVSVFEDIQAKV 302
           + +E+L     +  K  R   + + ++K++       S       +  +  ++E+   K 
Sbjct: 247 LDREELERRILVKAKKEREAALKEYEEKLLSQTAEALSIVDPEEIKPFVSELYEEAVKKT 306

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R ++++K +R DGR    +R IS +VGL  RTHGS+LF RG+TQ++ +VTLG   D Q 
Sbjct: 307 MRRLIVEKGIRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQI 366

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +D+L       FM+HYNF P  TGEV  +  PSRREIGHG LA RA+  +LP   +FPYT
Sbjct: 367 IDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPYT 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSEI ES+GSSSMATVC  SLALMDAGVPI K VAGIAMGL+ + D  +IL+DI G 
Sbjct: 427 IRVVSEILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVILTDIIGM 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDH G MDFKVAGT  GITA QMD K+ G+S+ +++ AL QA+  R++IL++M + +S  
Sbjct: 487 EDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDKMYETISAP 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLA 601
           R  L  + P +++  I PD++ +VIG GG+VI+ I++    KV IDD+ G VK+  +S  
Sbjct: 547 RPHLSRYAPIIKVTKIDPDKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKVVGNSEE 606

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++ A  +IR I    EV +I +G++ ++  +G F+     + GL+H S++  + + +  
Sbjct: 607 NVDNAIALIREIAKEIEVGEILEGKITRIEPYGLFIEVRPGKIGLLHQSKVGED-MRQFL 665

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             VK GDT+ V++++ DD G+++   K V + + +
Sbjct: 666 KKVKVGDTIKVQVINIDDLGRLQF--KRVKEESPQ 698


>gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 737

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/708 (39%), Positives = 435/708 (61%), Gaps = 18/708 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M    +  I+   GR +K+ETG++A+Q+DGAV  T G TV+LATV          DF PL
Sbjct: 1   MITPVSKTIDLGDGRTIKVETGKLAKQADGAVTVTMGNTVLLATVCAAADAAPDCDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+E+  AVG+ PGG+ RRE + ++ EIL SR++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVDYKEKYSAVGRFPGGFTRREGKASDYEILTSRLVDRALRPLFPADYHAEVFVNITLFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AAS+AL +S +PFEGP+   +V  ING++++NP  ++     +D+ V
Sbjct: 121 ADGVDMPDALAGLAASSALAVSDIPFEGPISEVRVARINGEFLINPTYEQVANADIDMMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T D ++MVE E +++ E  +L+AI   H   K   +A  +L++   K  +V  +    
Sbjct: 181 AATIDNIMMVEGEMDEVQEADMLEAIKVAHEAIKKQCQAQLELSEAVGK--LVKRTYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + ++ + Q + +      +        K  R    + L ++  + FS E  +  +  I  
Sbjct: 239 ENDDALRQDVHDKCYAKAYAIATSGTSKQERTASFEALIEEYKAQFSEEDLAAKKSMIAR 298

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + D++ + +R  +LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VT
Sbjct: 299 YYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVT 358

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT+ DE+ VD +    +  F++HYNF P +TGE     A  RREIGHG LA RA+  ++
Sbjct: 359 LGTKADEKLVDDVLCRCKERFLLHYNFPPFSTGEARPQRATGRREIGHGNLAFRALKRMI 418

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P   ++PY +R++S+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+ +  G 
Sbjct: 419 P--DEYPYVVRVISDILESNGSSSMATVCAGTLALMDAGVQIKKPVSGIAMGLISENKGT 476

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           ++ +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QA+ GR+HI
Sbjct: 477 NYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILERALAQAREGRMHI 536

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-- 589
           L ++ + +   R  L    PR+E + +P + I  +IG GGK+I+GI E++GA V+I++  
Sbjct: 537 LGKIEEAMPSVRPDLKPQAPRIEKLRVPKEFIGAIIGPGGKIIQGIQEKSGAVVSIEEID 596

Query: 590 -DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
            +G V+I+S++   ++AA  M+R I  +PEV ++Y G+V  VM +G FV F   ++GL+H
Sbjct: 597 GEGHVEISSANKESLDAALAMVRGIVAMPEVGEVYDGKVTSVMPYGCFVEFLPGKEGLLH 656

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           IS++   R  K  D  + EGD + ++LL+ D + GK KLS +V+    
Sbjct: 657 ISEIEWRRFEKIEDTNLHEGDNIRIQLLEIDPKTGKFKLSHRVLLPKP 704


>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
          Length = 897

 Score =  683 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/749 (37%), Positives = 431/749 (57%), Gaps = 58/749 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            H+++I    R   +ETG + RQ+ G+V  T GET+V  TV  + +  +  DFFPL+VNY
Sbjct: 86  KHSLKIPVGDRHTLVETGHMGRQASGSVTVTDGETIVYTTVCLNDTPSEPSDFFPLSVNY 145

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  A G+  GG+ +RE +  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D  
Sbjct: 146 QERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGS 205

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
            +P  +++ AA  AL LS +P    V G +V  I  +Y++NP  +E +   LDL ++GT 
Sbjct: 206 HAPDALAITAAGIALALSEIPTSKAVAGVRVGLIGDKYIVNPTAEEMENSELDLMLAGTD 265

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            A+LM+E   N L E+ +L A+  G +  + +   +  L K C K  ++   K    +L 
Sbjct: 266 SAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMIDAIKLPPPELY 325

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV-----------------------SY 278
           + + ++  ++L     I  K  R K +  L+++++                         
Sbjct: 326 KHVEEIAGDELVKVLQIRNKIPRRKALSSLEERVLKILTENGFVIDESTPRSNAETIAEI 385

Query: 279 FSSEHSS------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
              E                           ++E ++  VF+++ +K +R  +++   R 
Sbjct: 386 LEDEDEEVIVDGEVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRS 445

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-SGTQRND 373
           DGR  + +R I++   +L R HGS+LF RG+TQA+ V TLG  +  Q +++L        
Sbjct: 446 DGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDYKR 505

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y+F P   GE  R+GAPSRREIGHG LA R++  +LP    FPYT+R+ S ITES+
Sbjct: 506 FYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYTIRVESTITESN 565

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVPI   +AGIAMGLV D  +F      +ILSDI+G ED  G
Sbjct: 566 GSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASG 625

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG + GITA QMD+K+ GI+  IM  AL QA+ GR HIL EM K L     +L 
Sbjct: 626 DMDFKVAGNEDGITAFQMDIKVAGITLPIMREALLQARDGRKHILGEMMKSLPPPAKRLS 685

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           ++ P + +M + PD+I  +IG GGK ++ I+EQ+G + ++ +D+GTV+I +  LA +E +
Sbjct: 686 KYAPLIHVMKVRPDKINLIIGSGGKKVKSIIEQSGIEAIDTEDNGTVRIFAKDLASLEKS 745

Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           + +I S+T VP +  IY+   +K ++ +G FV     R+GL +IS+LS+  +AK  DV K
Sbjct: 746 KAIISSLTMVPNIGDIYRNCEIKSIVPYGVFVEIAPGREGLCYISELSSGWLAKAEDVFK 805

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            GD + VKL + +++G+++LS + +  + 
Sbjct: 806 VGDHIDVKLTEINEKGQLRLSHRALLPDA 834


>gi|288818483|ref|YP_003432831.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787883|dbj|BAI69630.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752073|gb|ADO45556.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
          Length = 705

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/687 (40%), Positives = 432/687 (62%), Gaps = 7/687 (1%)

Query: 4   VHTVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +H V      + P+ +ETG  A+ SDGAV+   G+T VL T V         DF PL+V+
Sbjct: 2   MHKVIANLGDKDPIIIETGHYAKLSDGAVVVRQGDTAVLVTAVVSEEPLQDIDFMPLSVD 61

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E++ A GKIPGG+++RE +PT+ E+L+SR+IDR IRPLF + + ++  +    +  D 
Sbjct: 62  YREQSSAWGKIPGGFVKREGKPTDREVLVSRVIDRPIRPLFPEGFFHDVVITALTLSADD 121

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P V+++  ASAAL +S +PFEGP+ G +V  I G++V NP  +E Q   L++ ++ +
Sbjct: 122 KYDPDVLAITGASAALHISRIPFEGPIAGLRVCRIEGKFVANPTYEERQKADLEIILAVS 181

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKL 240
           +D+++MVE  A ++ E+V  +A+ FG    K +I A  +L +      +  +      ++
Sbjct: 182 KDSIIMVEGGAKEVDEEVFANALYFGLEAGKELISAQEELREKVGVPKMSFEGIHLPQEI 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           ++ M +   E +  +  I +K  R +    + ++ +     +       ++   ++ + +
Sbjct: 242 KDLMEEFCTERILKTFEIQDKRERKENTSAILREFIERH--QIPEELHFKVGYHYKKLIS 299

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K++R  +L++ VR+DGR  E +R IS ++   +R HGS++F RG TQA   VTLG+  + 
Sbjct: 300 KLMRQKVLNEGVRIDGRKPEEIRPISIEIKPFERPHGSAIFTRGQTQAFATVTLGSPHEA 359

Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q V+S+  G     FM+HYNF P +TGE    G P RREIGHG LA RAI P++P   +F
Sbjct: 360 QLVESIYEGEVFKRFMLHYNFPPFSTGEAKPWGPPRRREIGHGALAERAIEPLIPPEEEF 419

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +RIVS I ES+GS+SMATVC  SLAL DAGVPI K VAGIAMGL+ +G+ ++ILSDI
Sbjct: 420 PYIIRIVSNILESNGSTSMATVCAGSLALFDAGVPIKKHVAGIAMGLIMEGERYVILSDI 479

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDED LG MDFKVAGT  GIT++QMD+KI G+ + IM+ +L QAKRGRL+IL +M + +
Sbjct: 480 LGDEDQLGDMDFKVAGTKDGITSVQMDIKIKGLKKEIMIESLMQAKRGRLYILEKMYEAI 539

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R +L  + PR+EI+ +P ++   +IG GGK ++ I E+TG  V + + G V + + S
Sbjct: 540 PEPRKELSPYAPRIEIITVPEEKAMLIIGPGGKTVKDIKEKTGTTVWVLEGGKVSLTAPS 599

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
            + I+AA+E+I ++    EV K+Y+G+V +V  +G FV     + GL+H+S++    V  
Sbjct: 600 KSAIDAAKEIIENLIRDVEVGKVYEGKVTRVEPYGVFVEILPGKVGLLHVSKM-EGYVKD 658

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLS 686
              V   GDT+ VK+L+ D++G+ KL+
Sbjct: 659 VRAVFSVGDTLKVKVLEVDEQGRAKLT 685


>gi|297562516|ref|YP_003681490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846964|gb|ADH68984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 770

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/704 (39%), Positives = 415/704 (58%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+      + TVVL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 16  FGTRTIRFETGRLARQAAGSATVYLDDETVVLSATTASKRPKENLDFFPLTVDVEERMYA 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  V+    E    VV
Sbjct: 76  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETVLALHPEHLYDVV 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GP+ G +V  I+GQ+V  P   E +  + D+ V+G        
Sbjct: 136 AINAASMSTQIAGLPFSGPIGGVRVALIDGQWVGFPTHAELENATFDMVVAGRVLADGDV 195

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKMC--------AK 227
           A++MVE E+   +  +V +         +  G    KP I+ + K  +           +
Sbjct: 196 AIMMVEAESTVRTLKLVAEGAVGPNEQTVAEGLEAAKPFIKVLCKAQQAVADQTSREQGE 255

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   +   +   ++E+L  +  I +K  R  ++D +K       + +     
Sbjct: 256 FPIFLDYEDDVYV--AVEGAVREELSKALTIADKQDREAELDRVKASAAEKLAEDFEG-R 312

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + F  +  +++R  +L   +R+DGR  + +R +SA+VG+L R HGS+LF RG+TQ
Sbjct: 313 EKEIGAAFRSLSKQLMRERVLRDGIRIDGRGPKDIRQLSAEVGVLPRVHGSALFERGETQ 372

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 373 IMGVTTLNMLRMEQTVDTLNPDKTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 432

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++LM AGVP+ + V+GIAMGL+
Sbjct: 433 ALLPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLMAAGVPLKEMVSGIAMGLI 492

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            +GD+F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI    + +ALQQA+  
Sbjct: 493 SEGDEFVTLTDILGAEDAFGDMDFKVAGTRELITALQLDTKLDGIPAEQLALALQQARGA 552

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           RL IL+ M + +     ++    PR+  + +P ++I  VIG  GK+I  I + TGA++ I
Sbjct: 553 RLAILDVMQEAIERP-AEMSPNAPRILTVKVPVEKIGEVIGPKGKMINSIQDDTGAEITI 611

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +DDGT+ I ++     EAAR+ I  I +  +PEV   Y G VVK   FGAFV     +DG
Sbjct: 612 EDDGTIYIGATDGPSAEAARDTINQIANPTMPEVGDRYLGTVVKTTTFGAFVSLLPGKDG 671

Query: 646 LVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           L+HISQ+      +R+    DV+  G+ + V++ + DDRGK+ L
Sbjct: 672 LLHISQIRKLHGGKRIENLDDVISIGEKIQVEIREIDDRGKLSL 715


>gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
 gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
          Length = 737

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/709 (41%), Positives = 429/709 (60%), Gaps = 17/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           +++     I  A GR + +ETG++A+Q+DG+V+   G+T++L TVV  +  K   DF PL
Sbjct: 6   LYNAVRKTITLADGREIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPL 65

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+++RE +  ++EIL++R+IDR++RPLF   Y  E  V +N++ 
Sbjct: 66  QVEYKEKYAACGRYPGGFMKREGKANDSEILVARLIDRALRPLFPSDYHAEVYVTVNLIS 125

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D +  P  ++ +AASAAL +S +PF GP+   +V  I GQYV+NP   + Q   LD+ V
Sbjct: 126 ADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVARIGGQYVINPAFSQMQDADLDIMV 185

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
            GT D +LMVE E  ++SE+V+L AI F H E K       +L+K   K+  V  +    
Sbjct: 186 GGTIDNILMVEGEMKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHE 243

Query: 239 KLEEEMSQ-MIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             +EE+ Q +I+E    +  I      K+ R    + L+ +  + FS E        I  
Sbjct: 244 VNDEELRQTIIRELYDKAYAIATSGTMKHEREDAFNALEAEFATRFSEEELVEKAPLIHK 303

Query: 294 VFE-DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            F  D+Q K +R ++LD+  R+DGR ++ +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 304 YFHDDVQKKAMRNMILDEGKRLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTV 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+  D +       F++HYNF P +TGE       SRREIGHG LA RA+ P+
Sbjct: 364 TLGTKMDEKVKDEVLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPM 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P   + PY +R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ D   
Sbjct: 424 VPVGEENPYAVRVVSDILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISDSAT 483

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  ++  AL+QA+ GR+H
Sbjct: 484 GRWAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAKALEQARVGRMH 543

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNI 587
           IL ++++ ++E R     F PR+  + IP D I  VIG GGKVI+ I +    T      
Sbjct: 544 ILGKLTECIAEPRADYRPFVPRIVQITIPQDMIGAVIGPGGKVIQDIQKTTGTTITITET 603

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+ G V I       ++AA   I+SI   PEV  +Y G+V  +M FGAFV     +D L+
Sbjct: 604 DNKGVVDIFGLDKEAMDAALSRIKSIVAQPEVGDVYNGKVRSIMPFGAFVEIMPGKDALL 663

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R     +  +KEGD + VK++  D +  K+KLS +V+    
Sbjct: 664 HISEIDYKRFETMEETGLKEGDMIEVKVIGIDPKTNKLKLSHRVLIPQP 712


>gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
 gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
          Length = 768

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/715 (38%), Positives = 426/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  +    GR + +ETG++A+Q+DGA++     T++LATVV  +    G DF PL 
Sbjct: 1   MNVITKTVALPDGRTISIETGKLAKQADGAIMLRLNNTMLLATVVAAKDAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            +Y+E+  A G+ PGG+ +RE R ++ EIL SR++DR++RPLF   Y  E  V I +   
Sbjct: 61  CDYKEKYSAAGRFPGGFTKREGRASDYEILTSRLVDRALRPLFPSNYHAEVYVNITLFSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D +  P  ++  AASAAL  S +PF+GP+   +V  ING YV+NP  ++  Q  +D+ V 
Sbjct: 121 DGKDMPDALAGFAASAALAASDIPFDGPISEVRVARINGAYVINPTFEQLKQADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T++ ++MVE E +++ E  +L+A+   H   KP+     +L K    +  V    D   
Sbjct: 181 ATEENIMMVEGEMDEVPESALLEALKAAHEAIKPMCRLQKELMKELGTD--VKREYDHEV 238

Query: 240 LEEEMSQMIKEDLR------VSCFIPEKYVRCKQIDDLKKKMVS-------YFSSEHSSW 286
            +E++ + + ++         +     K  R +    +++             +++    
Sbjct: 239 NDEDLRKQVTDECYQPVYAIAAAGNHNKNQREEGFTKIREDFKERYVAAHVTLAADELEE 298

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
               I   + D++   +R  +LD+  R+DGR +  +R I  + G L   HGS++F RG+T
Sbjct: 299 KNALIDRYYNDVERDAMRRCILDEGKRLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           QA+   TLGTR DE+ +D +       F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 QALATTTLGTRLDEKMIDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+   +P  A FPYT+RIVS+I ES+GSSSMATVC  +L+L+DAGVP+++PV+GIAMGL
Sbjct: 419 RALKNQIP--ADFPYTVRIVSDILESNGSSSMATVCAGTLSLLDAGVPMNRPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   + + ILSDI GDEDHLG MDFK  GT +G+TA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEEKYAILSDILGDEDHLGDMDFKTTGTINGLTATQMDIKCDGLSYEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR HIL ++++ L+E R       PR+    IP + I  VIG GGK+I+G+ E+TG+ 
Sbjct: 537 KAGREHILGKLTETLAEPRPDFKPHVPRIVAFEIPKEFIGAVIGPGGKIIQGMQEETGST 596

Query: 585 VNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + I+++   G +++++     I+AA   IR+I  VPEV +IY  ++V +M +G FV F  
Sbjct: 597 ITIEEEDGVGKIQVSAPCKESIDAAVAKIRAIVAVPEVGEIYDAKIVSIMPYGCFVEFMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            ++GL+HIS+++ +R+    +  + EGD   VKLL+ DD+ GK +LS +V++   
Sbjct: 657 GKEGLLHISEIAWKRLESVEEAGLHEGDHTSVKLLEIDDKTGKFRLSHRVLEPKP 711


>gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera]
          Length = 942

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/754 (38%), Positives = 435/754 (57%), Gaps = 62/754 (8%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG I RQ+ G+V  T GET+V  +V       +  DFFPL+VNYQE
Sbjct: 79  SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQE 138

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 139 RFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 198

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
           P  +++ AA  A+ LS LP    V G +V  +  ++++NP   E +   LDL V+GT  A
Sbjct: 199 PDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLLVAGTDSA 258

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243
           +LM+E   N L E+ +L A+  G +  + +   +  LAK   K  ++   K    +L   
Sbjct: 259 ILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGKPKMLDAIKLPPPELYRH 318

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS------------------ 285
           + ++  + L     I  K  R K +  L++++++  + E                     
Sbjct: 319 VEEIAGQQLGKVLQIRNKIPRRKALISLEEEVLTILTEEGYVSKDETLGTAETIQDLFED 378

Query: 286 -------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
                                          ++E ++  VF+++ +K +R  +++   R 
Sbjct: 379 EDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRIVEGGKRS 438

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-ND 373
           DGR  + +R I++Q GLL R HGS+LF RG+TQ++ VVTLG R+  Q +D+L        
Sbjct: 439 DGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDELKR 498

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y+F P   GEV RMGAPSRREIGHG LA RA+ P+LP    FPYT+R+ S ITES+
Sbjct: 499 FYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVESTITESN 558

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V + ++F      +ILSDI+G ED  G
Sbjct: 559 GSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDITGSEDASG 618

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT+ GITA QMD+K+GGI+  IM  AL QAK GR  IL EMSK       +L 
Sbjct: 619 DMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSPLPAKRLS 678

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           ++ P + IM + P++I  +IG GGK ++ I+E+TG + ++  DDG VKI +  L  +E +
Sbjct: 679 KYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLTSLEKS 738

Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           + +I S+T VP V  IY+   +K +  +G FV     R+GL HIS+LS   +AKT D  K
Sbjct: 739 KTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLAKTEDAFK 798

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            GD + VKL++ +D+G+++LS K +  + N  KP
Sbjct: 799 VGDRLDVKLIEINDKGQLRLSRKALLPNANPEKP 832


>gi|294631766|ref|ZP_06710326.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
 gi|292835099|gb|EFF93448.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
          Length = 740

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/708 (40%), Positives = 417/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  VM  + +    VV
Sbjct: 78  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVCTVMALNPDHLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 138 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA +             +E+VV   +       K + +A S LA   AK    
Sbjct: 198 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 257

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 258 FPIFLDYQD--DVLEALTAAVRPELAQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  ++VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 315 EKEISAAYRALTKQLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 435 ALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 494

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              ++    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 495 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 555 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 614 EITIEDDGTIYIGAADGPSAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721


>gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
 gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
          Length = 704

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/687 (39%), Positives = 422/687 (61%), Gaps = 7/687 (1%)

Query: 4   VHTVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  VE +     P+ +ETG  A+Q+DGAV+   G+T VL T V     +   DF PLTV+
Sbjct: 1   MIRVEAKVGDSDPIIIETGHYAKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVD 60

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E++ A GKIPGG+++RE +PT+ EIL+SR+IDR IRPLF + + ++  V    +  D 
Sbjct: 61  YREQSSAWGKIPGGFIKREGKPTDREILVSRVIDRPIRPLFPEGFSHDVVVTALTLSADD 120

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P V+++  ASAAL +S +PFEGP+ G ++  + G+ V NP  +E Q   L++ ++G+
Sbjct: 121 KYDPDVLAITGASAALHISRIPFEGPIAGVRICRVEGRLVANPTYEERQKADLEIVMAGS 180

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +DA++MVE  A ++ E+V+ +A+ FG    + ++ A  +L     +        D  + +
Sbjct: 181 KDAIVMVEGGAKEVDEEVLTEALYFGLEVIQDLLRAQEELRDKIGQPKASFQGLDLPEEI 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           + ++ +     ++ S  I +K  R      + ++ +  +  +     +  +   ++ + +
Sbjct: 241 QNQLVEFCSPRIKESFQIQDKRERKSFQSKVLEEFLQTY--QIPEELKFRVSYQYKKLIS 298

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K++R ++L++  R+DGR  + +R I+ ++   +R HGS++F RG TQA   VTLG  E+ 
Sbjct: 299 KLMRKMVLEEGRRIDGRGPKDIRPITIELHPFERPHGSAIFTRGQTQAFATVTLGAPEEA 358

Query: 361 QYVDSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q V+S+  G     FM+HYNF P +TGE    G P RREIGHG LA RA+ P++P   +F
Sbjct: 359 QMVESIYEGEVFKRFMLHYNFPPFSTGEARSWGPPRRREIGHGALAERALEPLIPPEEEF 418

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PY +R+VS I ES+GS+SMATVC +SLAL DAGVP+ K  AGIAMGL+ +GD ++ILSDI
Sbjct: 419 PYIIRVVSNILESNGSTSMATVCAASLALFDAGVPMKKHAAGIAMGLIMEGDRYVILSDI 478

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDED LG MDFKVAGT  GIT++QMD+K+ G+ + IM  ALQQAK GRL+IL +M + +
Sbjct: 479 LGDEDQLGDMDFKVAGTKDGITSVQMDIKVKGLKKEIMREALQQAKEGRLYILQKMYEAI 538

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            E R Q+  + P +EI+ IP D+   VIG GG+ +R   ++ G  V + + G V + S++
Sbjct: 539 PEPRPQVSPYAPVIEIITIPEDKALVVIGPGGRNVRDWRDRLGVSVWVHEGGRVSLTSTN 598

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
              ++  +E I+++    EV K+Y+G+V +V  +G FV     + GL+H+  +    V  
Sbjct: 599 REALQQVKEAIQNLVAEVEVGKVYEGKVTRVEPYGVFVEILPGKVGLMHVKDM-EGFVKD 657

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                  GD V VK+ + DD G+ KL+
Sbjct: 658 VRKAYSVGDKVKVKVYELDDLGRPKLT 684


>gi|119953582|ref|YP_945792.1| polynucleotide phosphorylase/polyadenylase [Borrelia turicatae
           91E135]
 gi|119862353|gb|AAX18121.1| polyribonucleotide nucleotidyltransferase [Borrelia turicatae
           91E135]
          Length = 727

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/716 (41%), Positives = 439/716 (61%), Gaps = 37/716 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L LETG +A+Q++GAVLATYG + VLATV    S ++  DF PL+V Y 
Sbjct: 13  KILKLKVGREDLILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYN 72

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  +
Sbjct: 73  EKYYAAGKIPGGFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMN 132

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +V M AA AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D
Sbjct: 133 PPDIVGMNAAFAAVFLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILDIVVAGSLD 192

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKL 240
            + MVE  AN++SE+V+L AI   +   K +     +   +     K P+  + + F + 
Sbjct: 193 GITMVEGGANEVSEEVLLAAIDQAYEYIKQICNLQKEFILIVGEREKLPLAYEERVF-EF 251

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDI 298
           + E+   I  +L+ +CF+  K  R K I  +K+K   +FSS  +    NE       +D 
Sbjct: 252 KAELKDFIYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSVSQVDEENETLFYKALDDF 311

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L+  +R DGR+   +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 312 EQEIVRRSILENNLRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSI 371

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   
Sbjct: 372 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRSLEAMLPKKDD 430

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGLV +GD ++ILSD
Sbjct: 431 FPYTIRVVSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSD 490

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++ +M  AL QA+ GR+HIL+ M  V
Sbjct: 491 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDSV 550

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR  +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +
Sbjct: 551 ISRSRDDISVNAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGT 610

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +++ A+  I SI   P++ +IY+G V K+  FGAF+     ++G +  S     R  
Sbjct: 611 DSLKMQKAKARIESIVREPKIGEIYEGVVKKINSFGAFIELTPTKEGFL--SNRPKSRDD 668

Query: 659 KTSDV---------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
           +  D+                           ++EG  V V++ D D  GKI+L +
Sbjct: 669 RYGDMRHSRYGSGRHSRYGRDSRNTFAMRPPRLEEGQMVKVRISDIDKFGKIELEL 724


>gi|325859693|ref|ZP_08172823.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           CRIS 18C-A]
 gi|325482619|gb|EGC85622.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           CRIS 18C-A]
          Length = 742

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/704 (40%), Positives = 422/704 (59%), Gaps = 25/704 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ 
Sbjct: 63  RYPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADSVDQPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
            AASAAL  S +P E P    +V  ING+YV++P  ++  +  +DL V  T+D ++MVE 
Sbjct: 123 FAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFEQMKEADMDLMVGATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E +++SE  ++ A+   H   KP+ E   +L+K C  +  V    D    +EE+ + +++
Sbjct: 183 EMDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKREYDDEINDEELREQVRK 240

Query: 251 DLRVSCFIP------EKYVRCKQIDDLKKKMVSY-------FSSEHSSWNEGEIVSVFED 297
           +   +C+        +K  R +  + +K              S +       EI   F D
Sbjct: 241 ETYDACYAEAQSGDNDKKHREETYEKIKADFTEAYDAAHTDLSEDDLEEKHAEIDRYFAD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q   +R  +LD   RMDGR ++ +R I  +V  L   HGS+LF RG+T ++   TLGT+
Sbjct: 301 VQRDSMRRSVLDTGKRMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DE+ VD++       F++HYNF P  TGE        RREIGHG LA RA+   +P  A
Sbjct: 361 MDEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRALKGQIP--A 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
            FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +
Sbjct: 419 DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK GR HILN +
Sbjct: 479 LSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGREHILNLL 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592
           +  ++E R ++    PR+  + IP + I  VIG GGK+I+ + E TGA + I++    G 
Sbjct: 539 TDTIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEDTGATITIEETDGVGK 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V++++ +   I+AA   I+SI  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++
Sbjct: 599 VQVSAPNKDSIDAALGKIKSIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEI 658

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
             +R+    D  +KEGD + VKLLD D + GK KLS +V+ +  
Sbjct: 659 DWKRLETVEDAGIKEGDKIKVKLLDIDPKTGKYKLSRRVLLEKP 702


>gi|308232239|ref|ZP_07664037.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu001]
 gi|308379315|ref|ZP_07668942.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu010]
 gi|308214573|gb|EFO73972.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu001]
 gi|308357442|gb|EFP46293.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu010]
          Length = 831

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/713 (39%), Positives = 415/713 (58%), Gaps = 40/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 101 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 160

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 161 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 220

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 221 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 280

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----ISKLAKMCAKE-PIV 231
           ++MVE EA +   ++V           +  G    KP I A      +LA    K     
Sbjct: 281 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 340

Query: 232 IDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           +D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +    
Sbjct: 341 VDFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG-R 399

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 400 EKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQ 459

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 460 ILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAER 519

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGLV
Sbjct: 520 ALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLV 579

Query: 468 KDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   
Sbjct: 580 SDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQ 639

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI 
Sbjct: 640 VLAGALEQAKDARLTILEVMAEAIDRP-DEMSPYAPRVTTIKVPVDKIGEVIGPKGKVIN 698

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDF 633
            I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK  DF
Sbjct: 699 AITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTDF 758

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 759 GAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 811


>gi|305680822|ref|ZP_07403629.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305659027|gb|EFM48527.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 758

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/724 (39%), Positives = 421/724 (58%), Gaps = 47/724 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V      +T++L+TV   +  ++G DFFPLTV+ +ER Y
Sbjct: 31  DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMY 90

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+  D +    V
Sbjct: 91  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMYDV 150

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT 181
           V++  ASAA  LSGLP  GPV G ++  I       GQ+V  P   + ++   +L V+G 
Sbjct: 151 VAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVAGR 210

Query: 182 ------------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                         A++MVE  A +   D + +         +  G    KPVIE    A
Sbjct: 211 IVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAEGLEAAKPVIELLCLA 270

Query: 218 ISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
              LA   AKEP            + + + +   + LR    I +K  R    +   +++
Sbjct: 271 QRGLADRVAKEPQEFPLFPPYSDNIYQAVERKATKKLRDLLTIKDKQERDDATNAYLEQV 330

Query: 276 VS----YFSSEHSSWN-EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           +      F+ +    + E EI + +  +  K+VR ++L +  R+DGR    +RD+  +V 
Sbjct: 331 MDGLIGKFAEDLGEADAEKEIRAAYSAVMKKIVRHMILTEHFRIDGRGVTDIRDLGVEVD 390

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+ T    ++ HYNF P +TGE  R
Sbjct: 391 LIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTTKRYIHHYNFPPYSTGETGR 450

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L +
Sbjct: 451 VGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLYN 510

Query: 451 AGVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D     + ++ L+DI G ED  G MDFKVAGT   ITA+Q+D
Sbjct: 511 AGVPLKAPVAGIAMGLVSDVVNGKERYVALTDILGAEDAFGDMDFKVAGTADFITALQLD 570

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL QA+  RL IL+ M++V+     ++ +F PR+  + +P  +I  V
Sbjct: 571 TKLDGIPSKVLADALAQARDARLTILDTMAEVIDIP-DEMSQFAPRITSVKVPVSKIGEV 629

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYK 624
           IG  GK I  I E+TGA+V+I++DGTV I+++S    +AA E I +I    +P+V + + 
Sbjct: 630 IGPKGKTINQITEETGAEVSIEEDGTVYISATSGEAADAAIEKINAIANPQLPKVGERFL 689

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  GD + V++LD D+RGKI
Sbjct: 690 GSVVKTTPFGAFVSLLPGRDGLVHISKLGGGKRVEKVEDVVNVGDKIEVEILDIDNRGKI 749

Query: 684 KLSM 687
            L +
Sbjct: 750 SLGL 753


>gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
           marinus SJ]
          Length = 709

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/699 (40%), Positives = 422/699 (60%), Gaps = 9/699 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           D     + + G+ + +ETGR+A+Q+DG+VL +   T VL TV     +KDGQDFFPL V 
Sbjct: 4   DKKVYSLNYGGKEVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEVKDGQDFFPLLVE 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y E+ Y+ GK  GG+L+RE RP+ +E L +R+IDR +RPLF + Y  +T V  NV+ +  
Sbjct: 64  YTEKFYSAGKFVGGFLKREGRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLSYSD 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
           E    V++ + ASAAL +S +PF GP+   +V  ++G+ VLNP   +  +  L++ V+ +
Sbjct: 124 EGDAEVLAGLGASAALTISDIPFNGPIGTCKVGRVDGKLVLNPSHSQWAESDLEIAVAAS 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
            DA+LMVE EA  + E  VL+AI FGH+  K  ++ + ++     +      S   ++ +
Sbjct: 184 ADAILMVEGEAKVVPEKEVLEAIYFGHDNIKEYVKLMEQMRSEIGRPKREFVSAAANETM 243

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-------GEIVS 293
             +M        R    I +K  R + +  L+K++ +  S    ++          E   
Sbjct: 244 MSKMRSDFASGARNCISIDDKMDRQRAVKALEKEVKNAMSEAPEAFGLTADDSFGKEAYK 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             +++  +++R  +L+++ R+ GR    VR+I  +  LL+  HGSSLF RG+TQ +  VT
Sbjct: 304 GVDELLYEMMRGDILNEEKRIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMAAVT 363

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           +G +  E+  DS+ GT+   F +HYNF P + GE   +    RRE+GHG LA RA+  V+
Sbjct: 364 IGGKHGEKMEDSIRGTEFQKFYLHYNFPPFSVGEARGVRGVGRRELGHGNLAERAVKAVM 423

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P   +F YT R+V E+ ES+GSSSM +VC +S+ALMDAGVPIS PVAGIAMGL+ DG+ F
Sbjct: 424 PSEEEFAYTTRVVCEVMESNGSSSMGSVCSASMALMDAGVPISNPVAGIAMGLITDGERF 483

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI GDEDHLG MDFKVAGT  GITA+QMD+KI G++  I+  +++QA+ GRLHIL 
Sbjct: 484 KVLTDILGDEDHLGDMDFKVAGTVDGITAIQMDIKITGLTREIVEKSIEQAREGRLHILG 543

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           EM+K +S  R +  +  PR+  + IP D+I  +IG GGK I+ + E     V I ++G V
Sbjct: 544 EMAKTISTKRAEFKDGVPRIVTVQIPVDKIGALIGPGGKNIKKLQEDFDVTVEITEEGLV 603

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K+  +    +      I    + PEV  IY+  VV + ++GAFV       GLVH+S+LS
Sbjct: 604 KVLGTDTDILNNCVASIDLQINGPEVGSIYEAVVVTIKEYGAFVDIIPGVSGLVHVSELS 663

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
            ERV   S+ + EGD V VK+++ D  G++KLS K V  
Sbjct: 664 DERVKDVSEYLSEGDKVSVKVVEVDRMGRLKLSAKAVKP 702


>gi|257096733|sp|A1R0N0|PNP_BORT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 717

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/716 (41%), Positives = 439/716 (61%), Gaps = 37/716 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L LETG +A+Q++GAVLATYG + VLATV    S ++  DF PL+V Y 
Sbjct: 3   KILKLKVGREDLILETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +V M AA AA+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D
Sbjct: 123 PPDIVGMNAAFAAVFLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILDIVVAGSLD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKL 240
            + MVE  AN++SE+V+L AI   +   K +     +   +     K P+  + + F + 
Sbjct: 183 GITMVEGGANEVSEEVLLAAIDQAYEYIKQICNLQKEFILIVGEREKLPLAYEERVF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEIVSVFEDI 298
           + E+   I  +L+ +CF+  K  R K I  +K+K   +FSS  +    NE       +D 
Sbjct: 242 KAELKDFIYSELKDACFVKGKLNRDKAIKLVKQKAYEHFSSVSQVDEENETLFYKALDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L+  +R DGR+   +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EQEIVRRSILENNLRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   
Sbjct: 362 DEQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRSLEAMLPKKDD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGLV +GD ++ILSD
Sbjct: 421 FPYTIRVVSEILESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLVSEGDKYVILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++ +M  AL QA+ GR+HIL+ M  V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKISNVTKQLMKDALAQARIGRMHILSIMDSV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR  +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +
Sbjct: 541 ISRSRDDISVNAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +++ A+  I SI   P++ +IY+G V K+  FGAF+     ++G +  S     R  
Sbjct: 601 DSLKMQKAKARIESIVREPKIGEIYEGVVKKINSFGAFIELTPTKEGFL--SNRPKSRDD 658

Query: 659 KTSDV---------------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
           +  D+                           ++EG  V V++ D D  GKI+L +
Sbjct: 659 RYGDMRHSRYGSGRHSRYGRDSRNTFAMRPPRLEEGQMVKVRISDIDKFGKIELEL 714


>gi|119717401|ref|YP_924366.1| polynucleotide phosphorylase/polyadenylase [Nocardioides sp. JS614]
 gi|187610316|sp|A1SLJ4|PNP_NOCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119538062|gb|ABL82679.1| Polyribonucleotide nucleotidyltransferase [Nocardioides sp. JS614]
          Length = 742

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/709 (40%), Positives = 423/709 (59%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R +K ETG +ARQ+ GAV A    +T++L+     +  KD  DFFPLT++ +ER Y
Sbjct: 17  KFGTRTVKFETGLLARQAAGAVTAYLDEDTMLLSATTAGKHPKDHFDFFPLTIDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + R E RP E+ IL  R+IDR +RP F K  +NE QV+I VM  + ++   V
Sbjct: 77  AAGKIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALNPDTPYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           +++ AAS +  LSGLPF GPV G +V  I GQ+V  P   + +    D+ V+G       
Sbjct: 137 LAINAASLSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDMVVAGRVTETGD 196

Query: 183 DAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA +             +E++V   +       K + EA  +LA + AK   
Sbjct: 197 VAIMMVEAEATEQTWDLVRSGTQAPTEEIVAGGLDAAKPFIKQLCEAQVELANVAAKPVQ 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+ +D +D   + + +   +K +L  +  I +K  R  + D+LK ++++    +    
Sbjct: 257 DFPVFLDYED--DVYDAVEAAVKAELAAAMKIADKQERNDRTDELKDEVLAKLGEQFEG- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + F  +  +VVR  +L  KVR+DGR    +R + A+VG++ R HGS+LF RG+T
Sbjct: 314 REKEIGAAFRSVNKQVVRESILRDKVRIDGRGLADIRPLHAEVGVIPRVHGSALFERGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS  +   +M  Y F P +TGE  R+G+P RRE+GHG LAR
Sbjct: 374 QILGVTTLDMLKMEQQLDTLSPEKHRRYMHKYVFPPFSTGETGRVGSPKRREVGHGALAR 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R +SE   S+GS+SM +VC S+LAL+ AGVP+  PVAGIAMGL
Sbjct: 434 RALLPVLPTREEFPYAIRQLSEAMGSNGSTSMGSVCASTLALLQAGVPLKAPVAGIAMGL 493

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           V    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL 
Sbjct: 494 VSGEIDGQLQYVALTDILGAEDAFGDMDFKVAGTREFVTALQLDTKLDGIPAEVLAQALT 553

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RL IL+ M++ + E   ++  + PR+  + IP D+I  VIG  GK+I  I + TG
Sbjct: 554 QARDARLTILDVMAEAIDEP-EEMSAYAPRIITITIPVDKIGEVIGPKGKIINQIQDDTG 612

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A ++I+DDGT+ I +++    EAA+  + +I +  +PEV + Y G VVK  +FGAFV   
Sbjct: 613 ASISIEDDGTIYIGATNGEAAEAAKNAVNAIANPTMPEVGERYLGTVVKTTNFGAFVSLM 672

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HIS+L +    +RV    DVV  G  + V++ + DDRGK+ L
Sbjct: 673 PGKDGLLHISKLRSLAGGKRVDAVEDVVSVGQKIQVQIAEIDDRGKLSL 721


>gi|225021179|ref|ZP_03710371.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946086|gb|EEG27295.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 758

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/724 (39%), Positives = 421/724 (58%), Gaps = 47/724 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V      +T++L+TV   +  ++G DFFPLTV+ +ER Y
Sbjct: 31  DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLSTVTASKQPREGFDFFPLTVDVEERMY 90

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+  D +    V
Sbjct: 91  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKDMYDV 150

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT 181
           V++  ASAA  LSGLP  GPV G ++  I       GQ+V  P   + ++   +L V+G 
Sbjct: 151 VAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELVVAGR 210

Query: 182 ------------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                         A++MVE  A +   D + +         +  G    KPVIE    A
Sbjct: 211 IVEKKVGKKVFNDVAIMMVEAGATEGVIDKISEGKPAPTEEVVAEGLEAAKPVIELLCLA 270

Query: 218 ISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ----IDDL 271
              LA   AKEP            + + + +   + LR    I +K  R       ++ +
Sbjct: 271 QRGLADRVAKEPQEFPLFPPYSDNIYQAVERKATKKLRDLLTIKDKQERDDATNGYLEQV 330

Query: 272 KKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
              ++  F+ +    + E EI + +  +  K+VR ++L +  R+DGR    +RD+  +V 
Sbjct: 331 MDGLIGKFAEDLGEADAEKEIRAAYSAVMKKIVRHMILTEHFRIDGRGVTDIRDLGVEVD 390

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+ T    ++ HYNF P +TGE  R
Sbjct: 391 LIPRAHGSSLFERGETQIMGVTTLDMLKMEQQIDSLTPTTTKRYIHHYNFPPYSTGETGR 450

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L +
Sbjct: 451 VGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLYN 510

Query: 451 AGVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D     + ++ L+DI G ED  G MDFKVAGT   ITA+Q+D
Sbjct: 511 AGVPLKAPVAGIAMGLVSDVVNGKERYVALTDILGAEDAFGDMDFKVAGTADFITALQLD 570

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL QA+  RL IL+ M++V+     ++ +F PR+  + +P  +I  V
Sbjct: 571 TKLDGIPSKVLADALAQARDARLTILDTMAEVIDIP-DEMSQFAPRITSVKVPVSKIGEV 629

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYK 624
           IG  GK I  I E+TGA+V+I++DGTV I+++S    +AA E I +I    +P+V + + 
Sbjct: 630 IGPKGKTINQITEETGAEVSIEEDGTVYISATSGEAADAAIEKINAIANPQLPKVGERFL 689

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  GD + V++LD D+RGKI
Sbjct: 690 GSVVKTTPFGAFVSLLPGRDGLVHISKLGGGKRVEKVEDVVNVGDKIEVEILDIDNRGKI 749

Query: 684 KLSM 687
            L +
Sbjct: 750 SLGL 753


>gi|94987448|ref|YP_595381.1| polynucleotide phosphorylase/polyadenylase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|187610280|sp|Q1MPL7|PNP_LAWIP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94731697|emb|CAJ55060.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Lawsonia intracellularis PHE/MN1-00]
          Length = 736

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/695 (40%), Positives = 446/695 (64%), Gaps = 11/695 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              +  +  G+ +  ETG +A Q++G++    G T+VL TV   + L+  + FFPLTV Y
Sbjct: 7   PIRLATQVGGKEIIFETGYMATQANGSLTVQCGGTIVLVTVC-SQPLESDKGFFPLTVEY 65

Query: 64  QERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
            E+ YA G+IPG + RRE  RP+E E LISR+IDR IRP+F K    + Q++ NV+  D 
Sbjct: 66  SEKMYAAGRIPGSFFRREIGRPSERETLISRLIDRPIRPMFPKGLAEDVQILANVISSDQ 125

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           E+   ++++  ASAA+MLS LPFE  +   ++  +NGQ+VLNP ++E +   L++  + +
Sbjct: 126 ENESDILAVTGASAAVMLSSLPFECAIAAGRIGRLNGQFVLNPTINEIELSDLNIVFAAS 185

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
            +AV+MVE EAN + E+++++A+ +GH E +P+I   +K+ ++  +  I     + + + 
Sbjct: 186 SEAVVMVEGEANVVEEEIIIEALEWGHKEIQPIITLQNKIQELAGRNKIPFVPVEENIVF 245

Query: 242 EEMSQMIKED--LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI----VSVF 295
            +  + + +   +  +  + EK  R +    +K+K+++    +       +I      + 
Sbjct: 246 SKKVEELADKFGIVEAMQVKEKQFRKEARKAVKEKVLAILKEDPLYAEHSDILNTVSEII 305

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +++ K+VR  ++ + +R+DGRD+ TVR I+ +VGLL RTHGS+LF RG+TQ++ + TLG
Sbjct: 306 GNLEKKIVRQRIVKENLRIDGRDTITVRPIAIEVGLLPRTHGSALFTRGETQSLCITTLG 365

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +  D Q VDSL+G    +FM+HYNF P + GEV  +   SRREIGHG LA +A+  +LP 
Sbjct: 366 SSTDNQRVDSLAGDTVKNFMLHYNFPPFSVGEVKPV-RVSRREIGHGALAEKALKYILPS 424

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
              FP+T+RIV+E  ES+GSSSMA +CG  L+LMDAGVPIS PVAG+AMGL+K+ D FI+
Sbjct: 425 QNTFPFTVRIVAETLESNGSSSMAAICGGCLSLMDAGVPISAPVAGVAMGLIKEDDQFIV 484

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDED  G MDFK+AGT  GITA+QMD+KI G++ ++M  A++QA+  R+HIL+EM
Sbjct: 485 LTDIIGDEDAFGDMDFKIAGTTKGITAVQMDIKITGLTTDVMRKAMEQAREARIHILSEM 544

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +K L   R  L ++ P+   + + PD IR +IG GGK I+ I   TGA ++I+D G + I
Sbjct: 545 AKALDVPRSNLSQYAPQHAELVVNPDAIRMIIGPGGKNIKQITTVTGAAIDINDSGKISI 604

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +   +E A++MI      PE+ K YKG+V K+++ GA +      +  VHISQL+ E
Sbjct: 605 FAPTSEAMEQAKQMILYYDQRPELGKNYKGKVRKILEIGAILEIMPNVEAFVHISQLAVE 664

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +A+ +DVV+ G+ + +K+++     +++ S K V
Sbjct: 665 HIAQVTDVVQLGEDMIIKVIEITGD-RVRASRKAV 698


>gi|298373282|ref|ZP_06983271.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298274334|gb|EFI15886.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 741

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/708 (41%), Positives = 444/708 (62%), Gaps = 19/708 (2%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V    ++   GR + +ETG++A+Q+DGAV+ T G+T++LATV   +    G DF PL+
Sbjct: 1   MNVIRKTVQLPDGREIIIETGKLAKQADGAVMVTLGKTMLLATVCSAQEANPGTDFMPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+LRRE RP++ EILISR++DR++RPLF   Y  ET V + +   
Sbjct: 61  VDYKEKFSACGRFPGGFLRREGRPSDYEILISRLVDRALRPLFPDDYHAETFVNVTLYSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D   +P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP +++ Q   L+L V+
Sbjct: 121 DGVDAPDALAGLAASAALAVSDIPFGGPISEVRVARIDGEFVINPTMEQLQNADLELIVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T D ++MVE E  ++SEDV+L+AI   H   KP  +    + +   K    +       
Sbjct: 181 ATLDNIMMVEGEMKEVSEDVLLNAIKAAHEAIKPQCQVQLDMMEAAGKTEKRL--YCHED 238

Query: 240 LEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIV 292
            +E++ + ++E      +        +K+ R    + + ++ ++    E +    +  I 
Sbjct: 239 NDEDLRRDVREKTYQKAYDIAVSGNADKHCRTAAFEAIVEEYIATIPEEEATDERKALIK 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++   +R  +LD+  R+DGR +  +R I ++V  L  THGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKDAMRRAILDEGKRLDGRKTNEIRPIWSEVDYLPATHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D    T  + F++HYNF P +TGE        RRE+GHG LA RA+ PV
Sbjct: 359 TLGTKLDEKIIDEALITGTDRFLLHYNFPPFSTGEARPSRGVGRREVGHGNLALRALKPV 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    + Y +R+VS+I ES+GSSSMATVC  +LALMDAGVPISKPV+GIAMGL+ +  G
Sbjct: 419 IP--ENYKYCIRVVSDILESNGSSSMATVCAGTLALMDAGVPISKPVSGIAMGLISENKG 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            ++ +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL+QA  GR+H
Sbjct: 477 KNYAVLSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILENALRQAHEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++++ ++E R  L    PR+E++ IP + I  VIG  GK+I+GI  +TGA ++I+++
Sbjct: 537 ILGKITETIAEPRADLKPHVPRIEVITIPKEFIGAVIGPQGKIIQGIQAETGATISIEEE 596

Query: 591 GTVKIASSSLA---EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           G V I   + A    IEAA E +R IT +PE  K+Y   V  VM +G FV F   ++GL+
Sbjct: 597 GEVGIVEIAAANRDSIEAALEKVRRITAMPEAGKVYSSTVKSVMPYGVFVEFMPGKEGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           HIS++   + A   +  +KEGDT  VKL++ D  GK +LS +V+ +  
Sbjct: 657 HISEIDYNKYATIEETGLKEGDTFDVKLIEIDKSGKYRLSSRVLKEAP 704


>gi|111115640|ref|YP_710258.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii PKo]
 gi|123145624|sp|Q0SM46|PNP_BORAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110890914|gb|ABH02082.1| polyribonucleotide nucleotidyltransferase [Borrelia afzelii PKo]
          Length = 722

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/715 (40%), Positives = 440/715 (61%), Gaps = 33/715 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEE 242
            + MVE  AN++SED++L AI   H   K +  A  +   +   KE + +  ++     +
Sbjct: 183 GITMVEGGANEVSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFK 242

Query: 243 E-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQ 299
           E +   I  DL+ +CF+  K  R K I  L+ K   +FS   +    NE      F+D +
Sbjct: 243 EELRDFIYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+ K+R DGR    +RDI A+V +L RTHGSSLF RG+TQA+ V TLGT  D
Sbjct: 303 KEIVRNSILNDKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSID 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    F
Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMIPGKNDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI
Sbjct: 422 PYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT++GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M+ V+
Sbjct: 482 LGEEDHLGDMDFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +    
Sbjct: 542 SNSRVGISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLS 653
             +++ A+E I SI   P+V +IY+G V K+  FGAF+     ++G +        S+  
Sbjct: 602 DFKMQKAKEKIESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYG 661

Query: 654 TERVAKTSDV---------------------VKEGDTVWVKLLDFDDRGKIKLSM 687
           + R    +                       ++EG  + V+++D D  GKI L +
Sbjct: 662 SGRFGHGNRYSRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716


>gi|225439207|ref|XP_002270169.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 946

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/754 (38%), Positives = 435/754 (57%), Gaps = 62/754 (8%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG I RQ+ G+V  T GET+V  +V       +  DFFPL+VNYQE
Sbjct: 79  SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFPLSVNYQE 138

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 139 RFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHS 198

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
           P  +++ AA  A+ LS LP    V G +V  +  ++++NP   E +   LDL V+GT  A
Sbjct: 199 PDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLLVAGTDSA 258

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEE 243
           +LM+E   N L E+ +L A+  G +  + +   +  LAK   K  ++   K    +L   
Sbjct: 259 ILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGKPKMLDAIKLPPPELYRH 318

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS------------------ 285
           + ++  + L     I  K  R K +  L++++++  + E                     
Sbjct: 319 VEEIAGQQLGKVLQIRNKIPRRKALISLEEEVLTILTEEGYVSKDETLGTAETIQDLFED 378

Query: 286 -------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
                                          ++E ++  VF+++ +K +R  +++   R 
Sbjct: 379 EDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRIVEGGKRS 438

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-ND 373
           DGR  + +R I++Q GLL R HGS+LF RG+TQ++ VVTLG R+  Q +D+L        
Sbjct: 439 DGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDELKR 498

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y+F P   GEV RMGAPSRREIGHG LA RA+ P+LP    FPYT+R+ S ITES+
Sbjct: 499 FYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVESTITESN 558

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V + ++F      +ILSDI+G ED  G
Sbjct: 559 GSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDITGSEDASG 618

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT+ GITA QMD+K+GGI+  IM  AL QAK GR  IL EMSK       +L 
Sbjct: 619 DMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSPLPAKRLS 678

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           ++ P + IM + P++I  +IG GGK ++ I+E+TG + ++  DDG VKI +  L  +E +
Sbjct: 679 KYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLTSLEKS 738

Query: 607 REMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           + +I S+T VP V  IY+   +K +  +G FV     R+GL HIS+LS   +AKT D  K
Sbjct: 739 KTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLAKTEDAFK 798

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVV--DQNTGKP 697
            GD + VKL++ +D+G+++LS K +  + N  KP
Sbjct: 799 VGDRLDVKLIEINDKGQLRLSRKALLPNANPEKP 832


>gi|256396976|ref|YP_003118540.1| polynucleotide phosphorylase/polyadenylase [Catenulispora
           acidiphila DSM 44928]
 gi|256363202|gb|ACU76699.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Catenulispora acidiphila DSM
           44928]
          Length = 737

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/720 (41%), Positives = 427/720 (59%), Gaps = 38/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   E T+VL+     +S KD  DFFPLTV+ +ER YA
Sbjct: 17  FGQRTVRFETGRLARQAAGSVVAYLDEETMVLSATTASKSPKDSLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           VG+IPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  +M  + +    VV
Sbjct: 77  VGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEVQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  I  ++V  P   E      D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIQDRWVAFPTHTELADAVFDMVVAGRTLEDGDV 196

Query: 184 AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA               +E+VV D +       K +  A  +LA   AK    
Sbjct: 197 AIMMVEAEATSQTVSLVAGGSTAPTEEVVADGLEAAKPFIKALCVAQQELASQAAKATAE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P  +D +D   + E +S   K +L  +  I  K+ R +++D +K  +V   + +     
Sbjct: 257 FPRFLDYQD--DVLEAVSATAKNELSNALTIAGKHEREEELDRVKALVVEKLAQQFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI   F  +  K+VR  ++  +VR+DGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 314 EKEIGGAFRALTKKLVRERIIRDQVRIDGRGVRDIRPLSAEVEVVPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + + TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGITTLNMLRMEQQLDTLNPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGLV
Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLV 493

Query: 468 K----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
                   +++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SAEIDGKTEYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK  RLHIL+ M + +     ++ EF PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 AKDARLHILDVMMEAIDVP-DEMSEFAPRIISVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I +S+ A  EAAR      +   +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGASNGAAAEAARVTINQIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            RDGL+H+SQL      +RV    DVVK GD + V++ + D RGK+ L + V+     KP
Sbjct: 673 GRDGLLHVSQLKKLAGGKRVENVEDVVKVGDKLQVEIAEIDSRGKLSL-IPVLPDEESKP 731


>gi|240171316|ref|ZP_04749975.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium kansasii
           ATCC 12478]
          Length = 756

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/744 (38%), Positives = 425/744 (57%), Gaps = 54/744 (7%)

Query: 1   MFDVHTVEIE---WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           MF+  T  I+   +  R ++ ETGR+A Q+ GAV+A   E  ++L+     ++ K+  DF
Sbjct: 1   MFEA-TATIDNGSFGTRTIRFETGRLALQAAGAVVAYLDEENMLLSATTASKNPKEHFDF 59

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ 
Sbjct: 60  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVT 119

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175
           ++  D      V+++ AASA+  L GLPF GP+   +V  I+G +V  P +++  +   D
Sbjct: 120 ILSLDPNDLYDVLAINAASASTQLGGLPFSGPIGAVRVALIDGTWVAFPTVEQIGRAVFD 179

Query: 176 LFVSGT----------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA 217
           + V+G             A++MVE EA +   D++           +  G    KP I A
Sbjct: 180 MVVAGRIVGTDDAGKPDVAIMMVEAEATENVIDLLEGGAAAPTESVVAQGLEAAKPFIAA 239

Query: 218 ----ISKLAKMCA-------KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                 +LA  C          P+  D  D   +   +S +  ++L  +  I  K  R +
Sbjct: 240 LCTAQQELADACGASAGTAGDFPVFPDYGD--DVYYAVSSVATDELAAALTIAGKAERNQ 297

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
           + D++K +++   +  +    E EI + F  +  K+VR  ++    R+DGR    +R +S
Sbjct: 298 RTDEIKTQVLERLADTYPG-REKEIGAAFRALTKKLVRQRIVTDHFRIDGRGITDIRALS 356

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
           A+V ++ R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TG
Sbjct: 357 AEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTG 416

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E  R+G+P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L
Sbjct: 417 ETGRVGSPKRREIGHGALAERALVPVLPGVEEFPYAIRQVSEALGSNGSTSMGSVCASTL 476

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD------------FIILSDISGDEDHLGHMDFKVA 494
           AL++AGVP+  PVAGIAMGLV D  +            F+ L+DI G ED  G MDFKVA
Sbjct: 477 ALLNAGVPLKAPVAGIAMGLVSDDIEVEGDDGKRTERRFVTLTDILGAEDAFGDMDFKVA 536

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           GT   +TA+Q+D K+ GI   ++  AL+QA+  RL IL  M++ +     ++  + PRV 
Sbjct: 537 GTKDFVTALQLDTKLDGIPSQVLAGALEQARDARLTILEVMAEAIDRP-DEMSPYAPRVT 595

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            + +P D+I  VIG  GKVI  I E+TGA+++I+DDGTV + ++     +AA + I +I 
Sbjct: 596 TIKVPVDKIGEVIGPKGKVINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIA 655

Query: 615 --DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
              +P V + + G VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + 
Sbjct: 656 NPQLPTVGERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLR 715

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTG 695
           V++ D D RGKI L +   ++++ 
Sbjct: 716 VEIADIDKRGKISLVLVAEEESSA 739


>gi|313887414|ref|ZP_07821103.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299600|ref|YP_004441521.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923056|gb|EFR33876.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176663|gb|AEE12353.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 736

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/706 (41%), Positives = 432/706 (61%), Gaps = 14/706 (1%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     I    GR + +ETG++A+Q+DGAV  T G TV+LA V   +  K   DF PL
Sbjct: 1   MINPVNKTITLPDGRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKEAKPDVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  AVG+ PGG+ RRE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKYSAVGRFPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP  ++ +   +DL V
Sbjct: 121 SDGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGEFVINPTFEQLERADIDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKD 236
           + T D ++MVE E  ++ E+ +L+AI   H   K   +A  +L++   K  +      + 
Sbjct: 181 AATLDNIMMVEGEMEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMTKREYPAEEQ 240

Query: 237 FSKLEEEMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             +L E M + + + + +V+    +K+ R    + + ++  + F+ E        I   +
Sbjct: 241 DEELRERMQRELYDKIYKVATAGTDKHARGDAFEAIVEEFKAQFTEEELEAKGMIIDRYY 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++   +R ++LD+  R+DGR +  +R I  +   L   HGS++F RG+TQ++  VTLG
Sbjct: 301 HDMEKAAMRRMILDEGKRLDGRRTNEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T+ DE+ VD +    +  F++HYNF P +TGE       SRREIGHG LA RA+  ++P 
Sbjct: 361 TKSDEKLVDDVLNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIP- 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
              +PY +R++S+I ES+GSSSMATVC  +LAL DAGV + KPV+GIAMGL+ +  G ++
Sbjct: 420 -EDYPYVIRVMSDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNY 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GRLHIL+
Sbjct: 479 AILSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILD 538

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---D 590
           ++ +   E+R  +    PR+E + I  + I  VIG GGK+I+GI EQ+GA VNI++    
Sbjct: 539 KIEEAQPEARPDMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEQSGATVNIEEVDNY 598

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V+I+SS+   ++AA  M+R I   PEV ++YKG V  VM +G FV F   +DGL+HIS
Sbjct: 599 GIVEISSSNKESLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHIS 658

Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           ++  +R A   D  +KEGDT+ VKL++ D + GK  LS K +    
Sbjct: 659 EIDWKRFATIEDTGLKEGDTIDVKLIEIDPKTGKFSLSHKALLPKP 704


>gi|256379820|ref|YP_003103480.1| polynucleotide phosphorylase/polyadenylase [Actinosynnema mirum DSM
           43827]
 gi|255924123|gb|ACU39634.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinosynnema mirum DSM 43827]
          Length = 747

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/704 (39%), Positives = 414/704 (58%), Gaps = 33/704 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETG +ARQ+ G+V+A   + T++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGHLARQAAGSVVAYLDDETMLLSATTASKAPKEHFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV+I VM  +      VV
Sbjct: 78  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVITVMSLNPADLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P  ++ +    D+ V+G       A
Sbjct: 138 AINAASASTQLAGLPFSGPIGGVRVALIEGQWVAFPTHEQLENAVFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVV--------LDAIIFGHNECKPVIEAISKLAKM--------CAKE 228
           ++MVE EA +   D++         + +  G    KP I+ + +              + 
Sbjct: 198 IMMVEAEATEKVIDLIGEGAQAPTEEVVAAGLEASKPFIKVLCEAQAQLAQVAAKATGEF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P     +  +   E +      DL  +  I  K  R  +ID++K  ++   +++     E
Sbjct: 258 PTFPAYQ--ADAFEAVEAAGASDLAQALTIAGKQEREGRIDEVKASVLEKLAAQFEG-RE 314

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +  K+VR  +L  KVR+DGR    +R + A+V ++ RTHGS+LF RG+TQ 
Sbjct: 315 KEVGAAFRSLTKKLVRQRILRDKVRIDGRGLTDIRSLGAEVAIIPRTHGSALFERGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +DSLS      ++ HYNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 375 LGVTTLNMLRMEQQIDSLSPETHKRYLHHYNFPPYSTGETGRVGSPKRREIGHGALAERA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP+  +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PV+GIAMGLV 
Sbjct: 435 LMPVLPKRDEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVSGIAMGLVS 494

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL QA
Sbjct: 495 DEVDGKTEYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPSEVLASALSQA 554

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +  RL IL  M++ +     ++  F PRV  + IP D+I  VIG  GK+I  I EQTGA 
Sbjct: 555 RDARLAILEVMAEAIDVP-DEMSPFAPRVTSVKIPTDKIGEVIGPKGKMINSITEQTGAD 613

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGT+ + ++     EAA  +I +I    +P+V + + G VVK   FGAFV     
Sbjct: 614 ISIEDDGTIYVGAADGPSAEAAIGLINAIANPQLPKVGERFLGTVVKTAAFGAFVSLLPG 673

Query: 643 RDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HIS+L   +R+ K  DVVK GD + V++ D D RGKI L
Sbjct: 674 KDGLIHISKLGNGKRIGKVEDVVKVGDKLRVEIADIDQRGKISL 717


>gi|224531821|ref|ZP_03672453.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia valaisiana
           VS116]
 gi|224511286|gb|EEF81692.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia valaisiana
           VS116]
          Length = 722

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/715 (40%), Positives = 442/715 (61%), Gaps = 33/715 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKVGRDELVFETGLMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFSGPIAAVRMVYLNGEFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDFSKLE 241
            + MVE  AN++SED++L AI   H   K +  A  +  ++  K+  +     +   + +
Sbjct: 183 GITMVEGGANEVSEDILLSAIDGAHEYIKQICNAQKEFLEIVGKKEKLPLAFEEKIFEFK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQ 299
           EE+   +  DL+ +CF+  K  R K I  L+ K   +FS   + +  NE      F+D +
Sbjct: 243 EELRDFVYSDLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNEPLFNRAFDDFE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+ K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  D
Sbjct: 303 KEIVRNSILNDKIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSID 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    F
Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI
Sbjct: 422 PYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT +GIT  QMD+KI  +++N+M  AL+QA+ GR+HIL+ M  V+
Sbjct: 482 LGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKNLMRDALEQARVGRIHILSIMDAVI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +    
Sbjct: 542 SDSRVGISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE---- 655
             +++ A+E I SI   P++ ++Y+G V K+  FGAF+     ++G +     S +    
Sbjct: 602 DFKMQKAKEKIESIVREPKIGEVYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYG 661

Query: 656 --RVAKTS---------------------DVVKEGDTVWVKLLDFDDRGKIKLSM 687
             R   ++                       ++EG  V V+++D D  GKI L +
Sbjct: 662 SGRFGNSNRYSRFGGGGDNIRGNAGLVRPSKLEEGQRVKVRIIDIDKFGKIDLEI 716


>gi|203288233|ref|YP_002223248.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
 gi|226702624|sp|B5RQE3|PNP_BORRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|201085453|gb|ACH95027.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
          Length = 717

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/714 (40%), Positives = 442/714 (61%), Gaps = 33/714 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y 
Sbjct: 3   KILKLKIGREDLILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLDIVVAGSLD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKL 240
            + MVE  AN++SE+++LDAI   +   K + +   +   +     K P+  + K F + 
Sbjct: 183 GITMVEGGANEVSEEILLDAIDKAYTYIKQICDLQKEFIYLIGEREKLPLAYEEKVF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDI 298
           ++++  +I  +L+ +CF+  K  R K I  +K+K   +FSS     +E EI+     +D 
Sbjct: 242 KDDLRSLIYFELKDACFVRGKLNRDKAIKLVKQKAYEHFSSLEQLNDENEILFYKACDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L+  +R DGR    +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EQEIVRKSILEDNLRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   
Sbjct: 362 DEQVMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRSLEAMLPKKDD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ + D ++ILSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDSV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR  +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +
Sbjct: 541 ISSSRGDISVNAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI--------- 649
              +++ A+  I SI   P+V +IY G V K+  FGAF+     ++G +           
Sbjct: 601 DNLKMQKAKAKIESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRY 660

Query: 650 -SQLSTERVAKTSD---------------VVKEGDTVWVKLLDFDDRGKIKLSM 687
            S +   R +                    ++EG  V V++ D D  GKI+L +
Sbjct: 661 GSDIRHSRYSNRHSRYGRDNRSSFSMRFPRLEEGQIVKVRISDIDKFGKIELEL 714


>gi|215404753|ref|ZP_03416934.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 02_1987]
 gi|218754524|ref|ZP_03533320.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis GM 1503]
 gi|260201911|ref|ZP_05769402.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T46]
 gi|308380469|ref|ZP_07669200.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu011]
 gi|308361392|gb|EFP50243.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu011]
          Length = 743

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/726 (39%), Positives = 421/726 (57%), Gaps = 44/726 (6%)

Query: 1   MFDVHTVEIE---WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           MF+  T  I+   +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DF
Sbjct: 1   MFE-TTATIDNGSFGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDF 59

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ 
Sbjct: 60  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVT 119

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLD 175
           ++  D      V+++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D
Sbjct: 120 ILSLDPGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFD 179

Query: 176 LFVSGT----QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----IS 219
           + V+G       A++MVE EA +   ++V           +  G    KP I A      
Sbjct: 180 MVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQ 239

Query: 220 KLAKMCAKE-PIVIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           +LA    K     +D   F    E++    S +  ++L  +  I  K  R ++ID++K +
Sbjct: 240 ELADAAGKSGKPTVDFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQ 299

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           +V   +  +    E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R
Sbjct: 300 VVQRLADTYEG-REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPR 358

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P
Sbjct: 359 AHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSP 418

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP
Sbjct: 419 KRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVP 478

Query: 455 ISKPVAGIAMGLVKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           +  PVAGIAMGLV D               F+ L+DI G ED  G MDFKVAGT   +TA
Sbjct: 479 LKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTA 538

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +Q+D K+ GI   ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+
Sbjct: 539 LQLDTKLDGIPSQVLAGALEQAKDARLTILEVMAEAIDRP-DEMSPYAPRVTTIKVPVDK 597

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVN 620
           I  VIG  GKVI  I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V 
Sbjct: 598 IGEVIGPKGKVINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVG 657

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + G VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D 
Sbjct: 658 ERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDK 717

Query: 680 RGKIKL 685
           RGKI L
Sbjct: 718 RGKISL 723


>gi|282858733|ref|ZP_06267886.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
           JCVIHMP010]
 gi|282588482|gb|EFB93634.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
           JCVIHMP010]
          Length = 748

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/704 (40%), Positives = 426/704 (60%), Gaps = 25/704 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ 
Sbjct: 63  RFPGGFTKREGKANDDEILTSRLVDRVLRPLFPADYHTEVYVQVMLLSADGIDQPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
            AASAAL  S +P E P+   +V  ING+YV+NP   +  +  +D+ V  T+D ++MVE 
Sbjct: 123 FAASAALAASDIPIEYPISEVRVARINGEYVINPTFPQMKEADMDIMVGATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E +++SE  ++ A+   H   KP+ E   +L+K C  +  V         +EE+ + +++
Sbjct: 183 EMDEVSELDLIGALKAAHEAIKPMCELQEELSKECGTD--VKREYCDEVNDEELREQVRK 240

Query: 251 DLRVSCFIP------EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFED 297
           +   +C+        +K+ R +    +K   V  F + H+     E       I   + D
Sbjct: 241 ETYDACYAQAQSGDNDKHHREEVYAQIKADFVEKFDAAHTELTADELAEKHEMIDRYYAD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R  +LD   RMDGR ++ +R I ++V  L   HGS+LF RG+T ++   TLGT+
Sbjct: 301 VERDTMRRSVLDTGKRMDGRATDEIRHIWSEVDTLPMPHGSALFQRGETMSLSTCTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DE+ VD++       F++HYNF P +TGE        RREIGHG LA RA+   +P   
Sbjct: 361 MDEKMVDNVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRALKNQIPT-- 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
            FPYT+R+VS+I ES+GSSSMATVC  +LAL+DAGVP+ KPV+GIAMGL+K+   D + I
Sbjct: 419 DFPYTVRLVSQILESNGSSSMATVCAGTLALLDAGVPMKKPVSGIAMGLIKNPGEDKYAI 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QAK GR HIL +M
Sbjct: 479 LSDILGDEDHLGDMDFKTTGTKDGITATQMDIKCDGLSYEILEKALMQAKAGREHILGKM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGT 592
            + +SE R ++    PR+E M IP + I  +IG GGK+I+ + E TGA + I++    G 
Sbjct: 539 METMSEPREEMKPQVPRIEQMFIPKEFIGAIIGPGGKIIQQMQEDTGATITIEEIENQGK 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +++++ +   I+AA   I++I  VPE+ +IY+G V  +M +G FV     +DGL+HIS++
Sbjct: 599 IQVSAPNKESIDAALGKIKAIVAVPEIGEIYEGTVRSIMPYGCFVEILPGKDGLLHISEI 658

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
             +R+    +  +KEGD + VKLL+ D + GK KLS KV+ +  
Sbjct: 659 DWKRLETVEEAGIKEGDKIQVKLLEIDQKTGKYKLSRKVLLEKP 702


>gi|289643638|ref|ZP_06475751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia symbiont of Datisca
           glomerata]
 gi|289506529|gb|EFD27515.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia symbiont of Datisca
           glomerata]
          Length = 733

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/716 (39%), Positives = 423/716 (59%), Gaps = 34/716 (4%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
             R ++ ETGR+ARQ+ G+ +A  G+T+VL+     +  K+  DFFPLTV+ +ER YA G
Sbjct: 21  GQRTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAG 80

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  V+  D ++   VV++
Sbjct: 81  RIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQIVATVLALDPDTLYDVVAI 140

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG------TQDA 184
            AASA+  L+GLPF GP+   +V Y++G ++  P   E +  + D+ V+G      +  A
Sbjct: 141 NAASASTTLAGLPFSGPIGATRVGYVDGTWIAFPTHAELERATFDMVVAGRVLDDGSDVA 200

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA               +EDVV   +       + +  A   LA+  AK     
Sbjct: 201 IMMVEAEATAHTIPLLAAGSPAPTEDVVAAGLEAAKPAIRELCRAQRGLAERAAKPTRDF 260

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ ID  D   + E +S  + ++L  +  I  K  R  ++D ++         +     E
Sbjct: 261 PLFIDYHD--DVLEALSIAVGDELAAALRIAGKQEREAELDRVRLLAAEKVVGQFEG-RE 317

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            EI + +  +  K+VR  ++   VR+DGR    +R+++A+V  + R HGS+LF RG+TQ 
Sbjct: 318 KEIGAAYRALTKKLVRQRIVADGVRIDGRGVTEIRELAAEVDFIPRVHGSALFERGETQI 377

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ VD+L+  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 378 LGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 437

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGIAMGL++
Sbjct: 438 LLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGLIR 497

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +GD F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  ALQQA+  R
Sbjct: 498 EGDQFVTLTDILGAEDAYGDMDFKVAGTREFVTALQLDTKLDGIPATVLAGALQQARAAR 557

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           L IL+ M++ +     ++    PRV  + IP D+I  VIG  GK+I  I   +GA++ ++
Sbjct: 558 LAILDVMAEAIDGP-DEMSTHAPRVISVKIPVDKIGEVIGPKGKMINQIQADSGAEITVE 616

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           DDGT+ I +      E+AR  I +I    +PEV + Y G +VK+  FGAFV     +DGL
Sbjct: 617 DDGTIYIGAQDGVSAESARSAINAIANPQLPEVGERYLGTIVKITIFGAFVSLTPGKDGL 676

Query: 647 VHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +HIS+L      +RV K  +VV+ G  + V++ D D RGKI LS  VV+   G P+
Sbjct: 677 LHISKLKQLSGGKRVEKVEEVVQVGQKLQVEITDIDSRGKISLS-PVVEDADGVPV 731


>gi|203284701|ref|YP_002222441.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
 gi|226702622|sp|B5RMZ9|PNP_BORDL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|201084144|gb|ACH93735.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
          Length = 717

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/714 (40%), Positives = 443/714 (62%), Gaps = 33/714 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L LETG +A+Q++GAVLATYG + VLATV    S+++  DF PL+V Y 
Sbjct: 3   KILKLKIGREDLILETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + E+L+SR+IDR +RPLF K +  E QV+   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEVLVSRLIDRPMRPLFDKRFGREIQVVPTTLSTDQMN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+N ++++NP  DE Q S LD+ V+G+ D
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLDIVVAGSLD 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDSKDFSKL 240
            + MVE  AN++SE+++LDAI   +   K + +   +   +     K P+  + K F + 
Sbjct: 183 GITMVEGGANEVSEEILLDAIDKAYAYIKQICDLQKEFIYLIGEREKLPLAYEEKVF-EF 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV--SVFEDI 298
           ++++  +I  +L+ +CF+  K  R K I  +K+K   +FSS     +E EI+     +D 
Sbjct: 242 KDDLRSLIYSELKDACFVRGKLNRDKAIKLVKQKAYEHFSSLEQINDENEILFYKACDDF 301

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + ++VR  +L+  +R DGR    +RDI A+V LL+RTHGS+LF RG+TQA+ V TLGT  
Sbjct: 302 EQEIVRKSILEDNLRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSI 361

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+R++  +LP+   
Sbjct: 362 DEQVMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRSLEAMLPKKDD 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSE+ ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ + D ++ILSD
Sbjct: 421 FPYTIRVVSEVLESNGSSSMATVCSGSMSLMAAGVPVKEQVAGIAMGLISNDDKYVILSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G+EDHLG MDFKVAGT +GIT  QMD+KI  +++ +M  AL+QA+ GR+HIL+ M  V
Sbjct: 481 ILGEEDHLGDMDFKVAGTKNGITGFQMDIKISNVTKQLMRDALEQARIGRMHILSIMDSV 540

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +S SR  +    P++  + I  D+I  VIG  GK ++ I ++   +V I+ DG + +  +
Sbjct: 541 ISSSRGDISVNAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVRVQIEQDGRITLFGT 600

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI--------- 649
              +++ A+  I SI   P+V +IY G V K+  FGAF+     ++G +           
Sbjct: 601 DNLKMQKAKAKIESIVREPKVGEIYDGIVKKINSFGAFIELTPTKEGFLSNRSRSRDDRY 660

Query: 650 -SQLSTERVAKTSD---------------VVKEGDTVWVKLLDFDDRGKIKLSM 687
            S +   R +  +                 ++EG  V V++ D D  GKI+L +
Sbjct: 661 GSDIRHSRYSNRNSRYGRDNRSSFSMRFPRLEEGQIVKVRISDIDKFGKIELEL 714


>gi|324998720|ref|ZP_08119832.1| polynucleotide phosphorylase/polyadenylase [Pseudonocardia sp. P1]
          Length = 759

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/710 (39%), Positives = 416/710 (58%), Gaps = 39/710 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ E GR+ARQ+ G+V+A   + T++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 22  YGTRTVRFEAGRLARQAAGSVVAYLDDETMLLSATTASKRPKDQFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP  + IL  R+IDR +RP F    +NE QV++ VM  D +    VV
Sbjct: 82  AGRIPGSFFRREGRPGTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDPYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQ-GSLDLFVSGT- 181
           ++ AASA+  L+GLPF GPV G +V  I      + Q+V  P  D+ +  + D+ V+G  
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIANETGTDTQWVAFPTHDQLERAAFDMVVAGRV 201

Query: 182 ---QDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
                A++MVE EA +             +EDVV D +       + +  A  +LA + A
Sbjct: 202 VGDDVAIMMVEAEATEKTIELVDGGANAPTEDVVADGLEAAKPFIRSLCVAQQQLADVAA 261

Query: 227 KEPIVIDSKDFSKLE----EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K     D   F   +    E +++ ++++L  +  I  K  R  + D++K  ++      
Sbjct: 262 KP--TADYPVFPAYQPDALEAVTEAVEQELAQALTIAGKQERETRTDEIKASVLEKLGER 319

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            +   E E+ + F  +  K++R  +L  +VR+DGR    +R +SA+V ++ R HGS+LF 
Sbjct: 320 FTG-RESELGNAFRALNKKLIRRRILTDQVRIDGRGLTDIRPLSAEVEVIPRAHGSALFE 378

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL     EQ +DSL       ++ HYNF P +TGE  R+G+P RREIGHG
Sbjct: 379 RGETQILGVTTLNMLRMEQTIDSLGPETSKRYLHHYNFPPFSTGETGRVGSPKRREIGHG 438

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGI
Sbjct: 439 ALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGI 498

Query: 463 AMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++ 
Sbjct: 499 AMGLVSDEVDGQTRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSEVLA 558

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL QAK  RL IL  + + +     ++ ++ PRV  + +P D+I  VIG  GK+I  I 
Sbjct: 559 AALSQAKDARLTILEVIGEAIDGP-DEMSKYAPRVTAVKVPVDKIGEVIGPKGKMINSIT 617

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAF 636
           E+TGA ++I+DDGT+ + ++     E A  MI +I    +P+V + + G VVK   FGAF
Sbjct: 618 EKTGADISIEDDGTIYVGANDGPSAEEAIGMINAIANPQLPKVGERFLGTVVKAAAFGAF 677

Query: 637 VHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V     +DGL+HIS+L   +R+ K  DV K GD + V++ D D+RGKI L
Sbjct: 678 VSLVPGKDGLIHISKLGNGKRIGKVEDVCKVGDKIRVEVTDIDNRGKISL 727


>gi|307564828|ref|ZP_07627356.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
           21A-A]
 gi|307346550|gb|EFN91859.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
           21A-A]
          Length = 751

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/715 (39%), Positives = 426/715 (59%), Gaps = 26/715 (3%)

Query: 2   FDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  I+ A GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTIQLADGRTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V I ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVYVQIMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           D    P  ++  AASAAL  S +P E P+   +V  I G+Y++NP  D+  +  +D+ V 
Sbjct: 121 DGVDQPDALAGFAASAALAASTIPIEYPISEVRVARIKGEYIINPTFDQMKEADMDIMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E +++SE  ++ A+   H   KP+ E   +L+K C  +  V        
Sbjct: 181 ATKDNIMMVEGEMDEVSEQELIGALKAAHEAIKPMCELQEELSKECGTD--VKREYCDEV 238

Query: 240 LEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE--- 290
            ++E+ + ++++   +C+        +K+ R +    +K   +  + + H      E   
Sbjct: 239 NDDELREQVRKETYNACYAQAQSGDDDKHHREEVYSQIKADFIEKYDAAHEDLTADELAE 298

Query: 291 ----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
               I   + D++   +R  +LD   RMDGR ++ +R I  +V  L   HGS++F RG+T
Sbjct: 299 KHEMIERYYADVERDTMRRSVLDTGKRMDGRATDEIRHIWCEVDALPMPHGSAIFQRGET 358

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            ++   TLGT+ DE+ VD++       F++HYNF P +TGE        RREIGHG LA 
Sbjct: 359 MSLSTCTLGTKMDEKMVDNVLEKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAW 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+   +P    FPYT+R+VS+I ES+GSSSMATVC  +LAL DAGVP+ KPV+GIAMGL
Sbjct: 419 RALKNQIPT--DFPYTVRLVSQILESNGSSSMATVCAGTLALFDAGVPMKKPVSGIAMGL 476

Query: 467 VKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           +K+   D + ILSDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QA
Sbjct: 477 IKNPGEDKYAILSDILGDEDHLGDMDFKTTGTRDGITATQMDIKCDGLSYEILEKALMQA 536

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K GR +IL +M + +   R ++    PR+E + IP + I  +IG GGK+I+ + E TGA 
Sbjct: 537 KAGREYILGKMMETMPAPRSEMKPQVPRIEQLFIPKEFIGAIIGPGGKIIQQMQEDTGAT 596

Query: 585 VNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           + I++    G + I++ +   I+AA   I+SI  VPE+ ++Y+G V  +M +G FV    
Sbjct: 597 ITIEEIDNQGKISISAPNKESIDAALGKIKSIVAVPEIGEVYEGIVRSIMPYGCFVEIMP 656

Query: 642 ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            +DGL+HIS++  +R+    +  +KEGD + VKLL+ D + GK KLS +V+ +  
Sbjct: 657 GKDGLLHISEIDWKRLETVEEAGIKEGDKIKVKLLEIDQKTGKYKLSHRVLLEKP 711


>gi|298209020|ref|YP_003717199.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
           atlanticus HTCC2559]
 gi|83848947|gb|EAP86816.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
           atlanticus HTCC2559]
          Length = 741

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/706 (39%), Positives = 431/706 (61%), Gaps = 18/706 (2%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           V    I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   +   DF PLTV+
Sbjct: 5   VFKETIDLGDGREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYK-QSDVDFLPLTVD 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+  A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD 
Sbjct: 64  YREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDD 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           +  P  ++ +AASAA+ LS  PFE  +  A+V  +NG++V+NP   +  +  +D+ +  +
Sbjct: 124 DVMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRTQLAESDIDMMIGAS 183

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSK 239
            D+V+MVE E +++SE+ + +AI F H   K   EA  KLA+   K+        ++   
Sbjct: 184 ADSVMMVEGEMDEISEEEMTEAIKFAHEAIKVQCEAQVKLAEAFGKKETREYAAEREDED 243

Query: 240 LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           L +++  M  + +   +     K+ R +   D+K ++++ FS E        I   +   
Sbjct: 244 LAKKVHDMAYDKVYAIAQAGSAKHERSQAFSDIKDEIIATFSEEEQEDFGSLISKYYYKA 303

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   +R + L++ +R+DGR +  +R I  +V  L   HGSS+F RG+TQA+  VTLGT  
Sbjct: 304 EKAAIRDLTLNEGLRLDGRKTTDIRPIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSR 363

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D   +D  S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P    
Sbjct: 364 DANMIDMPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVP--ED 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIIL 476
            PYT+R+VSE+ ES+GSSSMATVC  ++A+MDAGV + KPV+GIAMGL+ D +   + +L
Sbjct: 422 CPYTVRVVSEVLESNGSSSMATVCAGTMAMMDAGVQMKKPVSGIAMGLISDAESGKYAVL 481

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL +++
Sbjct: 482 SDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLT 541

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----G 591
             +S+    +  + P++  + IP + I  +IG GGKVI+ + ++TG  + I++D     G
Sbjct: 542 DTISQPNEDVKSYAPKMVSVRIPNEYIGAMIGPGGKVIQELQKETGTTIVINEDPVTEEG 601

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHI 649
            ++I  +    I+A    I S+T  P+V  +Y+ +V+K++DFGA V +      + L+H+
Sbjct: 602 IIEILGTGQEGIDAVLAKIDSVTFKPQVGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHV 661

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           S+L+ ER    SDVVK GD + VK    D R +  K+S K + +  
Sbjct: 662 SELAWERTENVSDVVKLGDIIDVKYFGIDKRTRKEKVSRKALLEKP 707


>gi|224534158|ref|ZP_03674738.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
           A14S]
 gi|224514583|gb|EEF84897.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
           A14S]
          Length = 724

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/717 (40%), Positives = 442/717 (61%), Gaps = 35/717 (4%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG IA+Q++G+VLATYG + VLATV    + ++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFIAKQANGSVLATYGGSSVLATVCCSSNAREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEE 242
            + MVE  AN++SED++L AI   H   K +  A  +   +   KE + +  ++     +
Sbjct: 183 GITMVEGGANEVSEDILLSAIDSAHEYIKQICNAQKEFLDVVGEKEKLPLAFEEKIFEFK 242

Query: 243 E-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQ 299
           E +   +  DL+ +CF+  K  R K I  L+ K   +FS   + +  NE      F+D +
Sbjct: 243 EELRDFVYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDTNESLFHKAFDDFE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+ K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  D
Sbjct: 303 KEIVRNSILNDKIRTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALAVTTLGTSID 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    F
Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI
Sbjct: 422 PYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT++GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M+ ++
Sbjct: 482 LGEEDHLGDMDFKVAGTENGITGFQMDIKIENVTKHLMRDALEQARIGRIHILSIMNSII 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +    
Sbjct: 542 SNSRVGISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI------SQLS 653
             +++ A+E I SI   P+V +IY+G V K+  FGAF+     ++G +        S+  
Sbjct: 602 DFKMQKAKEKIESIVREPKVGEIYEGVVKKINSFGAFIELTPTKEGFLSTRLRSRDSKYG 661

Query: 654 TERVAKTSD-----------------------VVKEGDTVWVKLLDFDDRGKIKLSM 687
           + R    S+                        ++EG  + V+++D D  GKI L +
Sbjct: 662 SGRFGNNSNRYSRFGGAGGDNIRGNTGLIRPPKLEEGQQIKVRIVDIDKFGKIDLEI 718


>gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
 gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
          Length = 805

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/703 (46%), Positives = 463/703 (65%), Gaps = 10/703 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    +EW  R L +E+G+IARQ+DGAV+  YG T VL+TVV  +S K+  DF PLT
Sbjct: 1   MFDITRKCVEWGDRLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKS-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+G+IPGG+ +RE +P++ E LISR++DRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFLAKSYAIGRIPGGFFKREGKPSDRETLISRLVDRSIRPLFPTGFCDEIVIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDED-QGSLDLF 177
           D  S P  V+++ A+AAL +SG+PF  P+ GA++ YI  +  Y+LNP  +E  +  LD+F
Sbjct: 120 DQVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARSELDMF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKD 236
            SGT+ +V+MVE EA++LSE+ +L A+ FGH  C  V++ I + A+    K+ +     D
Sbjct: 180 YSGTKSSVVMVESEASELSEEEMLGAVTFGHENCAQVLDLIEEFAEAAGPKDVVEFVPHD 239

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQI----DDLKKKMVSYFSSEHSSWNEGEIV 292
             K+  ++S    E   V+     K   C  +        +        E   + E E++
Sbjct: 240 IGKVVSDISSGYSEKFSVAYSDHNKKPECSSLMPPGKACTQICAGKHVEESGEYTEQEVL 299

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              +  +  +VR  +LD   R+DGR  + +R+I  +V L+ R+HGS+LF RGDTQA+V+ 
Sbjct: 300 LAIKTFERSLVRARVLDTLKRVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVIT 359

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            LGT +DEQ VD   G +R  F++HYNF   A GE + +  P RREIGHG+LA RAIHPV
Sbjct: 360 ALGTPQDEQVVDGFDGDRRERFLLHYNFPSYAVGEAAALRPPGRREIGHGKLAWRAIHPV 419

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP  A FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVP+   VAGIAMGL+K+GD 
Sbjct: 420 LPTKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDR 479

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDED+LG MDFKVAGT  GITA+QMDMKI GI  +I+  +LQQAK GRL I+
Sbjct: 480 YAVLSDIIGDEDYLGDMDFKVAGTKDGITALQMDMKIRGIGFDIIEKSLQQAKDGRLFII 539

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M KV+ ESR  + +  PR+E M I  ++I+NVIG GGK +R I E+TG K+ I  DGT
Sbjct: 540 GKMDKVIKESREGVRDHVPRMESMIIDKNKIKNVIGTGGKNVREICEKTGVKIEISQDGT 599

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I + S   +E A+ MI  I   PEV K++ G + ++  +GAFV F G R GLVHIS++
Sbjct: 600 VMIYAVSRDAVEEAKNMIMCIVSEPEVGKVFSGVISEIAKYGAFVSFLGGRRGLVHISEI 659

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             E +   SDV+   D V V ++  D +  ++LSM+ VDQ++G
Sbjct: 660 KNEHIGSVSDVLAVDDKVKVLVIGID-KDHVQLSMRRVDQDSG 701


>gi|219684925|ref|ZP_03539866.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii PBr]
 gi|219671663|gb|EED28719.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii PBr]
          Length = 721

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/714 (40%), Positives = 440/714 (61%), Gaps = 36/714 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGEFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEE 242
            + MVE  AN++SED++L AI   H   K +  A  K  ++   KE + +  ++     +
Sbjct: 183 GITMVEGGANEVSEDILLSAIDGAHEYIKQICNAQKKFLEIVGEKEKLPLAFEEKIFEFK 242

Query: 243 E-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQ 299
           E +   I  DL+ +CF+  K  R K I  L+ K   +FS   + +  NE      F+D +
Sbjct: 243 EELKDFIYTDLKDACFVKGKLNRDKAIALLRNKSYEHFSSLEKLTDSNESLFYKAFDDFE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+ K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  D
Sbjct: 303 REIVRNSILNDKIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSID 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    F
Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI
Sbjct: 422 PYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+
Sbjct: 482 LGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +    
Sbjct: 542 SDSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             +++ A+E I SI   P+V +IY+G V K+  FGAF+     ++G +  S     R +K
Sbjct: 602 DFKMQKAKERIESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFL--STRLKSRDSK 659

Query: 660 TSD----------------------------VVKEGDTVWVKLLDFDDRGKIKL 685
                                           ++EG  + VK++D D  GKI L
Sbjct: 660 YGSGRFGTGNRYSRFGGGDNIRGNVGLVRPPKLEEGQRIKVKIIDIDKFGKIDL 713


>gi|237823993|pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823995|pdb|3H1C|B Chain B, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823997|pdb|3H1C|C Chain C, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823999|pdb|3H1C|G Chain G, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824001|pdb|3H1C|I Chain I, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824003|pdb|3H1C|K Chain K, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824005|pdb|3H1C|M Chain M, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824007|pdb|3H1C|O Chain O, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824009|pdb|3H1C|R Chain R, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824011|pdb|3H1C|T Chain T, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824013|pdb|3H1C|V Chain V, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824015|pdb|3H1C|X Chain X, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
          Length = 549

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/549 (49%), Positives = 376/549 (68%), Gaps = 2/549 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLG 547
           ++  R  + 
Sbjct: 541 INAPRGDIS 549


>gi|303238032|ref|ZP_07324575.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
           FB035-09AN]
 gi|302481822|gb|EFL44874.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
           FB035-09AN]
          Length = 739

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/704 (39%), Positives = 418/704 (59%), Gaps = 25/704 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRNITIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ 
Sbjct: 63  RFPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHTEVFVSVMLLSADGVDMPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
            AASAA+  S +P E P+   +V  +NG+Y++NP  ++  +  +D+ V  T+D ++MVE 
Sbjct: 123 FAASAAMQCSDIPIEHPISEVRVARVNGEYIINPTFEQMKEADMDIMVGATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E  ++SE  ++DA+   H+  KP+ E   +LAK    +  V         +EE+ + +K+
Sbjct: 183 EMEEVSEQDLIDALKAAHDAIKPMCEIQEELAKELGTD--VKREYCDEVNDEELREQVKK 240

Query: 251 DLRVSCFI------PEKYVRCKQIDDLKKKMVS-------YFSSEHSSWNEGEIVSVFED 297
           +   +C+        +K  R +  + +K   V          S +       +I   F D
Sbjct: 241 ETYDACYAQAQSGDDDKKHRAEVYEKIKADFVERYDAAHTDLSEDDLEEKHAQIDRYFAD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R  +LD   RMDGR  + +R I  +V  L   HGS+ F RG+T A+   TLGT+
Sbjct: 301 VERDSMRRSVLDTGKRMDGRACDEIRPIWCEVDPLPMPHGSAYFQRGETLALATCTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DE+ VD++       F++HYNF P  TGE        RREIGHG LA R +  ++P   
Sbjct: 361 LDEKMVDNVLDKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGMIP--E 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
            FPYT+R+VS++ ES+GSSSMATVC  +LALMDAGVPI KPV+GIAMGL+K+   D + +
Sbjct: 419 DFPYTVRLVSQVLESNGSSSMATVCSGTLALMDAGVPIKKPVSGIAMGLIKNPGEDKYAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFK  GT  GITA QMD+K  G+S  I+  AL QAK+ R  IL+++
Sbjct: 479 LSDILGDEDHLGDMDFKTTGTRDGITATQMDIKCDGLSFEILEKALMQAKQAREFILDKI 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---DGT 592
           ++ + E R ++    PR+  M IP + I  +IG GGK+I+ + E TGA + ID+    G 
Sbjct: 539 TETIPEPREEMKPQVPRIVQMEIPKEFIGAIIGPGGKIIQQMQEDTGATITIDEVDGVGK 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +++++ +   I+AA   I++I  VPE+ + Y+G V  +M +G FV     +DGL+HIS++
Sbjct: 599 IQVSAPNKTAIDAALGKIKAIVAVPEIGETYEGTVRSIMPYGCFVEIMPGKDGLLHISEI 658

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
             +R+    +  +KEGD + VKLLD D + GK KLS + + +  
Sbjct: 659 DWKRLETVEEAGIKEGDKIQVKLLDIDPKTGKYKLSRRCLLEKP 702


>gi|255534604|ref|YP_003094975.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340800|gb|ACU06913.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 780

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/696 (42%), Positives = 441/696 (63%), Gaps = 16/696 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q++G+V+   G T++LATVV ++    G DF PLTV+Y+E+ Y+ G
Sbjct: 15  DGREITIETGKLAKQANGSVVVRMGGTMLLATVVANKDASPGVDFLPLTVDYREKFYSGG 74

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPG + RRE+RP++ EIL  R++DR +RPLF   +  E QV+I+++ +D E  P  ++ 
Sbjct: 75  KIPGNFFRREARPSDEEILTMRLVDRVLRPLFPDDFHAEVQVMISLISYDKECMPEALAG 134

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAVLMVEL 190
           +AASAA+ ++ +PF GP+    V  I+GQ V+NP  +  D+  L++ V  T+D+++MVE 
Sbjct: 135 LAASAAIAITDIPFNGPMSEVTVARIDGQLVVNPSRENLDKADLNILVGATKDSIVMVEG 194

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
             ++++E+ +++AI F H E K  +EA  +LA+   K  +          +EE+ + + +
Sbjct: 195 VMDEITEEEMIEAIKFAHEEIKVQVEAQERLAERVGK-SLPKREYTHENHDEEIREKVWK 253

Query: 251 DLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           D     +        K  R      + ++ ++ +S E     +      F D++ + +R 
Sbjct: 254 DTFDKVYEVAKTPSAKEERHDNFKAVLEEFLAQYSEEELETVKPFAKIYFHDVEKEAMRQ 313

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++L++K+R+DGR  ET+R I ++V  L   HGS++F RG+TQ++  VTLG+ +D   VDS
Sbjct: 314 MILNEKIRLDGRTPETIRPIWSEVDYLPGAHGSAVFTRGETQSLTAVTLGSVKDANMVDS 373

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           ++      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A+ PYT+RI
Sbjct: 374 VAINYDEKFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALSRIIP--AENPYTIRI 431

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGDE 483
           VS+I ES+GSSSMATVC  +LALMDAGV I+KPV+GIAMGLV   +   F +LSDI GDE
Sbjct: 432 VSDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLVTDPESGKFTVLSDILGDE 491

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+KI G+S +IM  AL+QA+ GRLHIL EM K L   R
Sbjct: 492 DHLGDMDFKVTGTADGITACQMDIKIQGLSMDIMETALKQAREGRLHILGEMLKTLDAPR 551

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGTVKIASSSL 600
           + +    P++E++ IP + I  VIG GGK+I+ + +     + I+   + G ++I+  S 
Sbjct: 552 VDVKPHAPKMEVLEIPKEFIGGVIGPGGKIIQQMQKDFQTVIAIEEIGEIGRIEISGVSR 611

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I A    I  IT VP V ++Y G+VVKVMDFGAFV      +GL+HIS++   R+ K 
Sbjct: 612 ENINATIAAINEITFVPTVGEVYNGRVVKVMDFGAFVAIAKGTEGLLHISEIEWARLDKV 671

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                EGD V VK + +DDR K+KLS KV+ +   +
Sbjct: 672 P--YNEGDMVEVKFMGYDDRKKMKLSRKVLLERPPR 705


>gi|239781891|pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781893|pdb|3GCM|B Chain B, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781895|pdb|3GCM|C Chain C, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781908|pdb|3GLL|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core
 gi|239781910|pdb|3GME|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase In
           Complex With Rnase E And Manganese
          Length = 549

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/549 (49%), Positives = 376/549 (68%), Gaps = 2/549 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540

Query: 539 LSESRLQLG 547
           ++  R  + 
Sbjct: 541 INAPRGDIS 549


>gi|296394402|ref|YP_003659286.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181549|gb|ADG98455.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rotundus DSM 44985]
          Length = 737

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/728 (38%), Positives = 413/728 (56%), Gaps = 36/728 (4%)

Query: 3   DVHTVEIE-----WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDF 56
           +VH V  E     +  R +K +TG++A+Q+ G+V AT   +T VL+   +    K   DF
Sbjct: 7   NVHEVTCELDNGAFGVRTVKFQTGKLAQQAAGSVFATLDEDTSVLSATTFSAQPKSQFDF 66

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F+   +NE Q+++ 
Sbjct: 67  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFADGLRNEVQIVVT 126

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175
           V+  +  +   V+++ AASA+  LSGLPF GP+ G +V  I  Q+V  P +++  +   D
Sbjct: 127 VLSLNPNAVYDVLAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLQEAVFD 186

Query: 176 LFVSG-----------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           + V+G                 T  A+ ++E  A + +E VV + +       K +  A 
Sbjct: 187 MVVAGRVLEDGDVAVMMVEAEATDHAIKLIEGGATKPTEQVVAEGLEAAKPFLKQLAIAQ 246

Query: 219 SKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
             LA +  KE   +         + + +       L  +  +P K  R  +I+ +K +  
Sbjct: 247 EALAAVAGKEAFELQQFHPYQQDVYDAVEFNAGAVLSEALSLPGKVEREARIEAIKAEAK 306

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +    +     E EI + F  +  K+VR  +L    R+DGR    +R +SA++  + R H
Sbjct: 307 AQLEPQFEG-RESEISAAFRSLNKKLVRERILSDGFRIDGRGLRDIRPLSAEISPVPRVH 365

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS+LF RG+TQ + V TL   +  Q VD+L    +  +M HYNF P +TGE  R+G+P R
Sbjct: 366 GSALFQRGETQILGVTTLDLLKMAQEVDALGPVSKRHYMHHYNFPPYSTGETGRVGSPKR 425

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+ AGVPI 
Sbjct: 426 REIGHGALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLAAGVPIK 485

Query: 457 KPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGL    V     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI
Sbjct: 486 APVAGIAMGLVSGEVNGETKYVTLTDILGAEDAFGDMDFKVAGTADFVTALQLDTKLDGI 545

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
              ++  AL QAK  R  +L+ ++  + E   +L  F PR+  + IP D+I  VIG  GK
Sbjct: 546 PSQVLAEALAQAKEARDTLLDVIANAIDEP-AELSPFAPRITTIKIPVDKIGEVIGPKGK 604

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKV 630
           +I  I E+TGA ++I+DDGTV +A++S    +AA + I +I    +P+V + Y G VVK 
Sbjct: 605 MINSITEETGANISIEDDGTVYVAAASGDSAQAAIDKINAIANPQLPKVGERYLGTVVKT 664

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             FGAFV     +DGLVHIS+L   +R+    DVV+ G  + V++ D DDRGKI L +  
Sbjct: 665 TAFGAFVSLTPGKDGLVHISKLGNGKRIVSVEDVVQIGSKLRVEIADIDDRGKISL-ILA 723

Query: 690 VDQNTGKP 697
           +D+     
Sbjct: 724 LDEAPATD 731


>gi|219685671|ref|ZP_03540485.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii Far04]
 gi|219672787|gb|EED29812.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii Far04]
          Length = 721

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/714 (40%), Positives = 440/714 (61%), Gaps = 36/714 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGEFIVNPSFEEIHNSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEE 242
            + MVE  AN++SED++L AI   H   K +  A  +  ++   KE + +  ++     +
Sbjct: 183 GITMVEGGANEVSEDILLSAIDGAHEYIKQICNAQKEFLEIVGEKEKLPLAFEEKIFEFK 242

Query: 243 E-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQ 299
           E +   I  DL+ +CF+  K  R K I  L+ K   +FS   + +  NE      F+D +
Sbjct: 243 EELKDFIYTDLKDACFVKGKLNRDKAIALLRNKSYEHFSSLEKLTDSNESLFYKAFDDFE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+ K+R DGR    +RD+ A+V +L RTHGS+LF RG+TQA+ V TLGT  D
Sbjct: 303 REIVRNSILNDKIRTDGRTPNEIRDVIAEVDILSRTHGSALFTRGETQALAVTTLGTSID 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    F
Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI
Sbjct: 422 PYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+
Sbjct: 482 LGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +    
Sbjct: 542 SDSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             +++ A+E I SI   P+V +IY+G V K+  FGAF+     ++G +  S     R +K
Sbjct: 602 DFKMQKAKERIESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFL--STRLKSRDSK 659

Query: 660 TSD----------------------------VVKEGDTVWVKLLDFDDRGKIKL 685
                                           ++EG  + VK++D D  GKI L
Sbjct: 660 YGSGRFGTGNRYSRFGGGDNIRGNVGLVRPPKLEEGQRIKVKIIDIDKFGKIDL 713


>gi|256371446|ref|YP_003109270.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008030|gb|ACU53597.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 792

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/723 (38%), Positives = 415/723 (57%), Gaps = 34/723 (4%)

Query: 5   HTVEIEWAG--RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
            +VE +  G   PL+ ETG++A Q++GAV+A  G T VL T    + +++G DFFPLTV+
Sbjct: 4   ISVERQLTGVPSPLRFETGKLALQANGAVVARLGGTTVLVTATGAKHVREGIDFFPLTVD 63

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
            +ER YA GKIPG + RRE R T+  IL +R+IDR +RP F+  ++NE  V+  V+  DL
Sbjct: 64  VEERMYAAGKIPGSFFRREGRATDQAILTARLIDRPLRPSFADGFRNEVHVVATVLGADL 123

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDE-DQGSLDLFVSG 180
            +   V+++ AASAALM+SGLPFEGP+   +V    +G ++  P   + D  S +L V+G
Sbjct: 124 VNPHDVLAINAASAALMVSGLPFEGPIGAVRVALAADGSWIPFPTFQQGDASSFELVVAG 183

Query: 181 ------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLA 222
                 T  A++MVE    +             +E  V + ++      +  IE   +L 
Sbjct: 184 RKTSDGTDIAIMMVEAGGTEATWGAFEANAAIPTEATVAEGLVAAKQWIRESIELQEELV 243

Query: 223 KMCAKEPIVIDSKDFSKLEE---EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                 P    +      E+    ++++ +E L  +    +K  R   +D     + +  
Sbjct: 244 AKLDHRPTFAWTPMRDYEEDVLVRVNEVGRERLAAANAHTDKVTRQDALDAAGDAIWAEL 303

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           + E     E E+ +    +  ++VR  +  + VR+DGRD+ T+R +  +VGL+   HGS 
Sbjct: 304 ADEFPE-REREVRAAIRRVTKEIVRERITREGVRIDGRDTTTIRPLLIEVGLIPTAHGSG 362

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + + TLG     Q +D+L   +   +M HYN  P ATGE   M  P RREI
Sbjct: 363 LFQRGETQVLNICTLGMPRMNQQLDTLGVDEEKRYMHHYNMPPFATGETGFMRGPKRREI 422

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP  ++FPY LR+VSE+  S+GS+SMA+VCGS+L+LMDAGVPI   V
Sbjct: 423 GHGLLAERALVPVLPPESEFPYALRLVSEVLSSNGSTSMASVCGSTLSLMDAGVPIRAAV 482

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
            GIAMGL+     +  L+DI G ED  G MDFKVAGT   +TA+Q+D KI GI   ++  
Sbjct: 483 GGIAMGLIAHDGVYTTLTDILGAEDAFGDMDFKVAGTREFVTALQLDTKIDGIPSEVLAA 542

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA++ R+ IL++M  V+   R ++ E  PR+    +P D++  +IG  GK I  + +
Sbjct: 543 ALEQARQARVSILDQMLAVIPAPRSEVAETAPRLITFQVPLDKVGEIIGPKGKTINTLQQ 602

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-----ITDVPEVNKIYKGQVVKVMDFG 634
           +TGA V+IDDDG V        +IEAARE  R            + ++Y+G+VV +  FG
Sbjct: 603 ETGADVSIDDDGVVGTVVIGARDIEAAREAERRIQLILNPPQATLGEVYEGKVVGMTKFG 662

Query: 635 AFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           AFV+    +DGLVHIS+L   +RV +  DV++ G  + V++ D D  GK+ LS+  VD  
Sbjct: 663 AFVNVLPGKDGLVHISKLGRGKRVERVEDVLEMGQVLKVRVDDIDPSGKLSLSI--VDDE 720

Query: 694 TGK 696
            G+
Sbjct: 721 NGE 723


>gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 744

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/710 (44%), Positives = 439/710 (61%), Gaps = 26/710 (3%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M D   V +    GR +  ETGRIA+Q+ G+ +A  G+  VL+TV Y        DFFPL
Sbjct: 13  MLDPKEVSVNLPDGRVITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEE--KDGDFFPL 70

Query: 60  TVNYQERTYAVGKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           TV Y+E++YA G++PGGY +RE  RP++ EIL +R+IDR IRP+F + +  E QVI+ V+
Sbjct: 71  TVEYREKSYAAGRLPGGYSKREPGRPSDEEILSARIIDRPIRPMFPENFTREVQVIVQVL 130

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
             D + +P V+ + AAS ++ LS LPFE  V   +V  ++GQ ++ P  D+     LDL 
Sbjct: 131 SSDKKFAPDVLGVSAASLSIGLSELPFEQQVAAVRVAVVDGQNIVMPTYDQVAVADLDLV 190

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-- 235
           V+GT+D+V MVE  A ++SED ++ AI+ GH   K + +A  +L   CAK  + +  K  
Sbjct: 191 VAGTEDSVCMVEGGAYEVSEDTMIGAILAGHEVIKQMCKAQQELVDRCAKPKMELKPKFV 250

Query: 236 --DFSKLEEEMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVS-----YFSSEHSSWN 287
             +  KL   +  ++ ++L +       K      + DL  +M+          E  + N
Sbjct: 251 GEEHDKLVATVKDVVWDELNKDVHSNMVKTDFYPAMADLCARMLEDPRILAIIGEGEAQN 310

Query: 288 E---GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                +   +F D++   +R ++L++ VR+DGR +  VR I  ++G+L R HGS++F RG
Sbjct: 311 AQLAADAKGIFSDLERTAMREMILNEGVRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRG 370

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ +V+ TLGT+ DEQ  +SL G     +M+HYNF P + GE  ++G  SRREIGHG L
Sbjct: 371 ETQGLVICTLGTKADEQRFESLQGEGAKSYMLHYNFPPFSVGECKKLGL-SRREIGHGHL 429

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A R++  VLP    FPYT+R+VSEI ES+GSSSMA+VCG  L+LMDAGVPI  PVAGIAM
Sbjct: 430 AERSLAAVLPLPEDFPYTIRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAM 489

Query: 465 GL------VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           GL      VK+G    ILSDI+G EDHLG MDFKV GT  GITA QMD+KI GI+  +M 
Sbjct: 490 GLISEKGSVKEGGKIKILSDITGTEDHLGDMDFKVTGTAEGITAFQMDIKIRGITPELMR 549

Query: 519 MALQQAKRGRLHILNEMSK-VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
            AL+QA++GR+HIL  M++  L   R  + E  P +  M IP  +IR+VIG GG VI+G+
Sbjct: 550 EALEQARQGRIHILGRMAELGLPAPRPHVSEKAPTMLKMRIPTTKIRDVIGSGGSVIKGM 609

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             QTG  +NIDD+G + IA+ +    E  R MI  +T  PE  + YKG+V  +  FGAFV
Sbjct: 610 QAQTGCTINIDDNGNIDIAAPTGKAGEVCRRMIEELTAEPEPGRKYKGKVKTIQPFGAFV 669

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                RDGLVHIS+L+  RV K  DVV  GD V V  L  D +GK+KLSM
Sbjct: 670 EILPGRDGLVHISELADRRVDKVEDVVHVGDEVEVLCLGVDPKGKVKLSM 719


>gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2]
          Length = 713

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/708 (40%), Positives = 434/708 (61%), Gaps = 14/708 (1%)

Query: 1   MFD-VHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M + + +  I     R + +ETG++A+Q+DG+V+   G+T++LATVV+ + L    DF P
Sbjct: 1   MLNKIISKTISLPEHREITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           L V YQE+  A GKIPGG+LRRE +  ++E+LISR++DR+IRPLF   YK+ETQ+ I ++
Sbjct: 61  LHVEYQEKFAAAGKIPGGFLRREGKLGDHEVLISRLVDRAIRPLFPDNYKHETQINIFLI 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLF 177
             D E  P  ++ +AASAALM+S +PFEGP+   +V  I+GQ+V+NP     ++  +DL 
Sbjct: 121 SADPEILPESLAGLAASAALMISPIPFEGPISEVRVARIDGQFVVNPTQSALEKADIDLM 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA---KEPIVIDS 234
           V G++  +LMVE E +++ E  ++ AI F H   K   +   +LA   A    E   +  
Sbjct: 181 VGGSEKNILMVEGEMDEVQEADIIAAIQFAHEAIKLQCQVQKELADAVATLKFEAEPLQE 240

Query: 235 KDFSKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            +  +L++   + + + +  +    I  K++R      +KK+ +     +    +     
Sbjct: 241 TENFELKDRTFKALYDKVYATAKKGITNKHLRKSSFKQIKKEYLKELLQQDPETSTVHFD 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + +++ +VVR + L++ +R+DGR  + +R I +++  L   HGSSLF RG+TQ++  V
Sbjct: 301 KYYYELEKQVVRDLALNEGLRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTV 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DEQ +D       + FM+HYNF   +TGEV     P RREIGHG LA RA+  V
Sbjct: 361 TLGTKLDEQLIDRALLNGYSRFMLHYNFPSFSTGEVKFNRGPGRREIGHGHLAMRALKKV 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           LP   + PYT+RIVS+I ES+GSSSMATVC  SLALMDAG+ I   V+GIAMGL+ D   
Sbjct: 421 LPLDTENPYTIRIVSDILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQT 480

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               ILSDI GDED LG MDFKVAGT  GITA QMD+K+ G++  ++  AL+QAK GRLH
Sbjct: 481 GKHAILSDILGDEDALGDMDFKVAGTAKGITACQMDIKVSGLTPQLLQKALEQAKAGRLH 540

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL EM+K ++E +    +  P    M IP + I  VIG  GK+++ +  +TG  + I++ 
Sbjct: 541 ILGEMNKTITEPKTTYKKHAPSFSTMTIPKNMIGAVIGPSGKIVQEMQRETGTTIIIEEV 600

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G +K    +   +++A + ++ I   P V  +Y+G V  ++ FGAFV F   ++GL+
Sbjct: 601 EGKGIIKFFGPNQEAVQSAEKRVKDIVAEPVVGDVYQGTVKSIVPFGAFVEFMPGKEGLL 660

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  ER+     V++ G+ + VKLL+ D + GK KLS KV+  N 
Sbjct: 661 HISEVKWERIENLDQVLELGEVIPVKLLEIDPKSGKYKLSRKVLLPNP 708


>gi|187471096|sp|Q65ZW8|PNP_BORGA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 721

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/714 (40%), Positives = 438/714 (61%), Gaps = 36/714 (5%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
             ++++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y 
Sbjct: 3   KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYN 62

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  +
Sbjct: 63  EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P +V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ +
Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEE 242
            + MVE  AN++SED++L AI   H   K +  A  +   +   KE + +  ++     +
Sbjct: 183 GITMVEGGANEVSEDILLSAIDGAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFK 242

Query: 243 E-MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQ 299
           E +   I  DL+ +CF+  K  R K I  L+ K   +FS   + +  NE      F+D +
Sbjct: 243 EELKDFIYTDLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNESLFYKAFDDFE 302

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            ++VR  +L+ K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  D
Sbjct: 303 REIVRNSILNDKIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSID 362

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           EQ +D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    F
Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDF 421

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           PYT+R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI
Sbjct: 422 PYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDI 481

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G+EDHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+
Sbjct: 482 LGEEDHLGDMDFKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVI 541

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
           S+SR+ + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +    
Sbjct: 542 SDSRVGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDD 601

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER--- 656
             +++ A+E I SI   P+V +IY+G V K+  FGAF+     ++G +     S +    
Sbjct: 602 DFKMQKAKERIESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYG 661

Query: 657 -------------------------VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                                    V      ++EG  + VK++D D  GKI L
Sbjct: 662 SGRFGTGNRYPRFGGGDNIRGNVGLVRPPK--LEEGQQIKVKIIDIDKFGKIDL 713


>gi|296129365|ref|YP_003636615.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
 gi|296021180|gb|ADG74416.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
          Length = 744

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/720 (39%), Positives = 426/720 (59%), Gaps = 39/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T++L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREGFDFFPLTVDVEERQYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF K  +NE QV++ V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  +SGLPF GPV   ++  I+GQ+V  PR  E +  + ++ V+G        
Sbjct: 138 AINAASISTQISGLPFSGPVGAVRIALIDGQWVAFPRYTERERATFEIVVAGRVVEGGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIEA----ISKLAKMCAKE-- 228
           A+ M+E EA + S +++ +          +  G    KP I+A      +LA   AKE  
Sbjct: 198 AIAMIEAEAPEKSWNLIRNEGGVAPTEAVVAEGLEASKPFIKALVTAQMELAAQSAKETQ 257

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P   D +  +     + Q   E L  +  I  K  R  ++D++K ++ +  +++    
Sbjct: 258 TFPTFPDYQPDAY--AAVEQAATERLSAALQIAGKQERENRLDEIKAEVQAELAAQFEG- 314

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+ + +  +Q +++R  +L    R+DGR    +R +SA+V +L RTHGS+LF RG+T
Sbjct: 315 REKEVSAAYRSVQKQLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGET 374

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+L+   R  +M HYNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 375 QILGVTTLNMLRMEQQLDTLAPETRKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 434

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R VSE   S+GS+SM +VC ++L+L++AGVP+  PVAGIAMGL
Sbjct: 435 RAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAMGL 494

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           V D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL 
Sbjct: 495 VSDTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGALT 554

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QAK  RL IL+ +++ +     ++  F PRV  + +P D+I  VIG  GK+I  I E+TG
Sbjct: 555 QAKEARLAILDVIAEAIDVP-DEMSPFAPRVISVKVPVDKIGEVIGPKGKMINQIQEETG 613

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A ++I+DDGTV I ++     EAAR  I +I    +PE+ + + G VVK   FGAF+   
Sbjct: 614 ADISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEIGERFVGTVVKTTTFGAFISLS 673

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L   V+D+   +
Sbjct: 674 PGKDGLLHISQIRKLVGGKRVENVEDVLAVGQKVQVEIGEIDPRGKLSL-HAVLDEEQAE 732


>gi|296139452|ref|YP_003646695.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
           paurometabola DSM 20162]
 gi|296027586|gb|ADG78356.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
           paurometabola DSM 20162]
          Length = 750

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/707 (38%), Positives = 405/707 (57%), Gaps = 34/707 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR A+Q+ G+V A   + T++L+   + +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRFAQQAAGSVAAYLDDETMLLSATSHSKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT------- 181
           ++ AASA+  ++GLPF GPV G +V  I+GQ+V  P +++ +    D+ V+G        
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRIVSGSGK 204

Query: 182 --QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAKM--CAKEP 229
               A++MVE EA +   +++           +  G    KP I  + +  K        
Sbjct: 205 DADVAIMMVEAEATENVIELIAGGATAPTEAVVAEGLEAAKPFIAVLCEAQKQLAAGAAK 264

Query: 230 IVIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
              +   F   ++++           L  +  I  K  R    D +K +++     +   
Sbjct: 265 PTGEFPLFPAYQDDVFAAVEAAGAAKLNDALSIAGKQERDNATDVVKAEVLEAVGPQFEG 324

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             EGEI + F  +  K+VR  +L    R+DGR    +R +SA++ ++ R HGS+LF RG+
Sbjct: 325 -REGEIGAAFRSLTKKLVRQRILTDHFRIDGRGITDIRSLSAEIAVIPRAHGSALFERGE 383

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL   +  Q +DSL   +   +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 384 TQILGVTTLDMVKMAQQIDSLGPEKSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 443

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMG
Sbjct: 444 ERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMG 503

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL
Sbjct: 504 LVSDEVDGQARYVALTDILGAEDAFGDMDFKVAGTSDFVTALQLDTKLDGIPSQVLAGAL 563

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QAK  R  IL  M++ +     ++  + PR+  + +P D+I  VIG  GK I  I E+T
Sbjct: 564 GQAKDARTTILEVMAEAIDAP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKTINSITEET 622

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGTV + ++     +AA + I +I    +P+V + + G VVK   FGAFV  
Sbjct: 623 GANISIEDDGTVFVGAADGPSAQAAIDRINAIANPQLPKVGERFLGTVVKTTAFGAFVSL 682

Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              RDGLVHIS+L   +RV K  DVV  G  + V++ D D+RGKI L
Sbjct: 683 VPGRDGLVHISKLGNGKRVNKVEDVVNVGSKLQVEIADIDERGKISL 729


>gi|51599057|ref|YP_073245.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii PBi]
 gi|51573628|gb|AAU07653.1| polyribonucleotide nucleotidyltransferase [Borrelia garinii PBi]
          Length = 715

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/710 (40%), Positives = 436/710 (61%), Gaps = 36/710 (5%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++     L  ETG +A+Q++G+VLATYG + VLATV    ++++  DF PL+V Y E+ Y
Sbjct: 1   MKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPGG+++RE +P + EIL+SR+IDR +RPLF K +  E QVI   +  D  + P +
Sbjct: 61  AAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDI 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLM 187
           V M AA  A+ LS +PF GP+   ++ Y+NG++++NP  +E     LD+ V+G+ + + M
Sbjct: 121 VGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITM 180

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-KEPIVIDSKDFSKLEEE-MS 245
           VE  AN++SED++L AI   H   K +  A  +   +   KE + +  ++     +E + 
Sbjct: 181 VEGGANEVSEDILLSAIDGAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELK 240

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS--SEHSSWNEGEIVSVFEDIQAKVV 303
             I  DL+ +CF+  K  R K I  L+ K   +FS   + +  NE      F+D + ++V
Sbjct: 241 DFIYTDLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLTDSNESLFYKAFDDFEREIV 300

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +L+ K+R DGR    +RDI A+V +L RTHGS+LF RG+TQA+ V TLGT  DEQ +
Sbjct: 301 RNSILNDKIRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIM 360

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D + G +R +FM+HYNF P + GE  R+    RREIGHG LA+RA+  ++P    FPYT+
Sbjct: 361 DDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMVPGKNDFPYTI 419

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMATVC  S++LM AGVP+ + VAGIAMGL+ +GD +++LSDI G+E
Sbjct: 420 RVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEE 479

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKVAGT +GIT  QMD+KI  +++++M  AL+QA+ GR+HIL+ M  V+S+SR
Sbjct: 480 DHLGDMDFKVAGTKNGITGFQMDIKIENVTKHLMRDALEQARIGRMHILSVMDTVISDSR 539

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           + + ++ P++  + I  D+I  VIG  GK ++ I ++   KV I+ +G + +      ++
Sbjct: 540 VGISKYAPKIVQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKM 599

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER------- 656
           + A+E I SI   P+V +IY+G V K+  FGAF+     ++G +     S +        
Sbjct: 600 QKAKERIESIVREPKVGEIYEGIVKKINSFGAFIELTPTKEGFLSTRLKSRDNKYGSGRF 659

Query: 657 ---------------------VAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                                V      ++EG  + VK++D D  GKI L
Sbjct: 660 GTGNRYPRFGGGDNIRGNVGLVRPPK--LEEGQQIKVKIIDIDKFGKIDL 707


>gi|262202098|ref|YP_003273306.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
           43247]
 gi|262085445|gb|ACY21413.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
           43247]
          Length = 759

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/715 (39%), Positives = 410/715 (57%), Gaps = 44/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ G+V A   +  ++L+T    +  K+  DFFPLTV+ +ER YA
Sbjct: 29  FGTRTIRFETGRLALQAAGSVTAYLDDENMLLSTTAASKHPKEHFDFFPLTVDVEERMYA 88

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  +      VV
Sbjct: 89  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPNDLYDVV 148

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDEDQGS-LDLFVSGT- 181
           ++ AASA+  L+GLPF GPV G +V  I       GQ+V  P +++ +G+  D+ V+G  
Sbjct: 149 AINAASASTQLAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVVAGRI 208

Query: 182 --------QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKL 221
                     A++MVE EA               +E +V + +         + EA   L
Sbjct: 209 VSGEGDAADVAIMMVEAEATDKVLEIIAGGAQAPTEAIVAEGLEAAKPFIARLCEAQKSL 268

Query: 222 A----KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
           A    K   + P+       S   + +    K+ L     IP K  R ++ D+LK  +++
Sbjct: 269 AAAAAKETGEFPLFPPYA--SDAYDAVEAAAKDRLSEILTIPGKQERDEKTDELKDDILA 326

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               +     E EI + +  +  K+VR  +L    R+DGR    +R +SA+V ++ R HG
Sbjct: 327 QLGEQFEG-REKEIGAAYRSVTKKLVRQRILTDHFRIDGRGITDIRSLSAEVAVIPRAHG 385

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RR
Sbjct: 386 SALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRR 445

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  
Sbjct: 446 EIGHGALAERALVPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKA 505

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 506 PVAGIAMGLVSDTVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIP 565

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  AL QAK  RL IL+ M++ + E   ++  + PR+  + IP D+I  +IG  GK 
Sbjct: 566 SQVLAGALSQAKDARLTILDVMAEAIDEP-DEMSPYAPRITTVKIPMDKIGELIGPKGKT 624

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVM 631
           I GI E TGA ++I+DDGTV + ++     +AA + I +I    +P+V + + G +VK  
Sbjct: 625 INGITEDTGANISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPKVGERFLGTIVKTT 684

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     RDGLVHIS+L   +R+ K  DVV  G  + V++ D DDRGKI L
Sbjct: 685 AFGAFVSLLPGRDGLVHISKLGKGKRINKVEDVVNVGSKLRVEIADIDDRGKISL 739


>gi|215431723|ref|ZP_03429642.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis EAS054]
          Length = 743

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/726 (39%), Positives = 421/726 (57%), Gaps = 44/726 (6%)

Query: 1   MFDVHTVEIE---WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           MF+  T  I+   +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DF
Sbjct: 1   MFE-TTATIDNGSFGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDF 59

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    ++E Q+++ 
Sbjct: 60  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVT 119

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLD 175
           ++  D      V+++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D
Sbjct: 120 ILSLDPGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFD 179

Query: 176 LFVSGT----QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----IS 219
           + V+G       A++MVE EA +   ++V           +  G    KP I A      
Sbjct: 180 MVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQ 239

Query: 220 KLAKMCAKE-PIVIDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           +LA    K     +D   F    E++    S +  ++L  +  I  K  R ++ID++K +
Sbjct: 240 ELADAAGKSGKPTVDFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQ 299

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           +V   +  +    E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R
Sbjct: 300 VVQRLADTYEG-REKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPR 358

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P
Sbjct: 359 AHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSP 418

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP
Sbjct: 419 KRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVP 478

Query: 455 ISKPVAGIAMGLVKDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           +  PVAGIAMGLV D               F+ L+DI G ED  G MDFKVAGT   +TA
Sbjct: 479 LKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTA 538

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +Q+D K+ GI   ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+
Sbjct: 539 LQLDTKLDGIPSQVLAGALEQAKDARLTILEVMAEAIDRP-DEMSPYAPRVTTIKVPVDK 597

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVN 620
           I  VIG  GKVI  I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V 
Sbjct: 598 IGEVIGPKGKVINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVG 657

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + G VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D 
Sbjct: 658 ERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDK 717

Query: 680 RGKIKL 685
           RGKI L
Sbjct: 718 RGKISL 723


>gi|15609920|ref|NP_217299.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Rv]
 gi|15842321|ref|NP_337358.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31793959|ref|NP_856452.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           AF2122/97]
 gi|121638663|ref|YP_978887.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662625|ref|YP_001284148.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Ra]
 gi|148823971|ref|YP_001288725.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis F11]
 gi|167968613|ref|ZP_02550890.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Ra]
 gi|215412596|ref|ZP_03421324.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428215|ref|ZP_03426134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T92]
 gi|215447035|ref|ZP_03433787.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T85]
 gi|219558792|ref|ZP_03537868.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T17]
 gi|224991155|ref|YP_002645844.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798133|ref|YP_003031134.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232881|ref|ZP_04926208.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis C]
 gi|254365434|ref|ZP_04981479.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551842|ref|ZP_05142289.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187800|ref|ZP_05765274.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis CPHL_A]
 gi|289444328|ref|ZP_06434072.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T46]
 gi|289448441|ref|ZP_06438185.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553430|ref|ZP_06442640.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 605]
 gi|289570962|ref|ZP_06451189.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T17]
 gi|289746586|ref|ZP_06505964.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289751440|ref|ZP_06510818.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T92]
 gi|289758910|ref|ZP_06518288.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T85]
 gi|289762955|ref|ZP_06522333.1| guanosine pentaphosphate synthetase + polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|294994124|ref|ZP_06799815.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 210]
 gi|297635394|ref|ZP_06953174.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732392|ref|ZP_06961510.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN R506]
 gi|298526249|ref|ZP_07013658.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|306780966|ref|ZP_07419303.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu002]
 gi|306785594|ref|ZP_07423916.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu003]
 gi|306790189|ref|ZP_07428511.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu004]
 gi|306794273|ref|ZP_07432575.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu005]
 gi|306798691|ref|ZP_07436993.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu006]
 gi|306804546|ref|ZP_07441214.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu008]
 gi|306807414|ref|ZP_07444082.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu007]
 gi|307085479|ref|ZP_07494592.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu012]
 gi|308378098|ref|ZP_07668668.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu009]
 gi|313659724|ref|ZP_07816604.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN V2475]
 gi|81421764|sp|Q7TXW0|PNP_MYCBO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81669114|sp|O33325|PNP_MYCTU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610286|sp|A1KMC6|PNP_MYCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610290|sp|A5U6D6|PNP_MYCTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782730|sp|C1AFP7|PNP_MYCBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2624305|emb|CAA15578.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
           POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882616|gb|AAK47172.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           CDC1551]
 gi|31619553|emb|CAD94991.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
           POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
           bovis AF2122/97]
 gi|121494311|emb|CAL72789.1| Bifunctional protein polyribonucleotide nucleotidyltransferase
           gpsI: guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124601940|gb|EAY60950.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis C]
 gi|134150947|gb|EBA42992.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506777|gb|ABQ74586.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148722498|gb|ABR07123.1| bifunctional protein polyribonucleotide nucleotidyltransferase
           gpsI: guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis F11]
 gi|224774270|dbj|BAH27076.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319636|gb|ACT24239.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417247|gb|EFD14487.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T46]
 gi|289421399|gb|EFD18600.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438062|gb|EFD20555.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 605]
 gi|289544716|gb|EFD48364.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T17]
 gi|289687114|gb|EFD54602.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289692027|gb|EFD59456.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T92]
 gi|289710461|gb|EFD74477.1| guanosine pentaphosphate synthetase + polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|289714474|gb|EFD78486.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T85]
 gi|298496043|gb|EFI31337.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|308326219|gb|EFP15070.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu002]
 gi|308329777|gb|EFP18628.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu003]
 gi|308333383|gb|EFP22234.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu004]
 gi|308337406|gb|EFP26257.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu005]
 gi|308341071|gb|EFP29922.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu006]
 gi|308346145|gb|EFP34996.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu007]
 gi|308348876|gb|EFP37727.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu008]
 gi|308353596|gb|EFP42447.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu009]
 gi|308365003|gb|EFP53854.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu012]
 gi|323718629|gb|EGB27793.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904398|gb|EGE51331.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis W-148]
 gi|328457906|gb|AEB03329.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 4207]
          Length = 752

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/713 (39%), Positives = 415/713 (58%), Gaps = 40/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----ISKLAKMCAKE-PIV 231
           ++MVE EA +   ++V           +  G    KP I A      +LA    K     
Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261

Query: 232 IDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           +D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +    
Sbjct: 262 VDFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG-R 320

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 321 EKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQ 380

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 381 ILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAER 440

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGLV
Sbjct: 441 ALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLV 500

Query: 468 KDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   
Sbjct: 501 SDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQ 560

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI 
Sbjct: 561 VLAGALEQAKDARLTILEVMAEAIDRP-DEMSPYAPRVTTIKVPVDKIGEVIGPKGKVIN 619

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDF 633
            I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK  DF
Sbjct: 620 AITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTDF 679

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 680 GAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 732


>gi|183981938|ref|YP_001850229.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium marinum M]
 gi|226702666|sp|B2HKV3|PNP_MYCMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183175264|gb|ACC40374.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium marinum M]
          Length = 762

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/717 (39%), Positives = 415/717 (57%), Gaps = 46/717 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGSVVAYLDDENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      VV
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT------- 181
           ++ AASA+  L+GLPF GPV G +V  I+GQ+V  P +++ +    D+ V+G        
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 201

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----ISKLAKMCA 226
                A++MVE EA     ++V           +  G    KP I A      +LA    
Sbjct: 202 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 261

Query: 227 -------KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  + P+  +  D   +   +S +  + L  +  I  K  R ++ +++K +++   
Sbjct: 262 ATAKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 319

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  +    E EI + F  +  K+VR  ++    R+DGR    +R +SA+V L+ R HGS+
Sbjct: 320 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGITDIRALSAEVALVPRAHGSA 378

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 379 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 438

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PV
Sbjct: 439 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 498

Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           AGIAMGLV D  +        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 499 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 558

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  G
Sbjct: 559 IPSQVLAGALAQAKDARLTILEVMAEAIDTP-DEMSPYAPRVTTIKVPVDKIGEVIGPKG 617

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           KVI  I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK
Sbjct: 618 KVINSITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 677

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 678 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 734


>gi|313674338|ref|YP_004052334.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312941036|gb|ADR20226.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 713

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/708 (39%), Positives = 428/708 (60%), Gaps = 14/708 (1%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +          GR + +ETG++A+Q+DG+V    G+T++LATVV ++  ++G DF P++V
Sbjct: 5   NAIKKTFNLPDGREISIETGKLAKQADGSVEVRMGDTILLATVVSNKEAREGVDFLPMSV 64

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +YQE+  + GKIPGG+L+RE + ++ E+L SR++DR++RPLF   Y  ETQV+I +   +
Sbjct: 65  DYQEKFASSGKIPGGFLKREGKLSDYEVLTSRLVDRALRPLFPSDYHAETQVMIQLFSLE 124

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
               P  ++ +AASAAL  S +PF GP+   +V  +NG+ ++NP   + ++  +D+ V+ 
Sbjct: 125 ENDLPDALAALAASAALTASDIPFAGPISEVRVGRVNGEMIINPNSKQLEESDIDMIVAA 184

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVI--DSKDF 237
           T D ++MVE E  ++SE  +++AI F H   K   +A   LAK   K E      + +  
Sbjct: 185 TIDNIMMVEGELKEISEQEMVEAINFAHESIKLQCQAQLDLAKDAGKTEKREYNHEEEPD 244

Query: 238 SKLEEEMSQMIKEDL--RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           ++LE+E+     +      +  + +K  R +   ++K   +     E +  +     S  
Sbjct: 245 AELEKEIFDKYYQQFFDIAAKGLADKAERARLFSEIKDGYIDSL-PEDTEISLSLAKSYL 303

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
              Q K VR   L+ + R+DGR  + +R I +++  L   HGS++F RG+TQ++  VTLG
Sbjct: 304 SAAQKKAVRNATLETRSRLDGRKLDEIRPIWSEIDYLPSAHGSAVFTRGETQSLTTVTLG 363

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T+ DEQ VD    +  N F++HYNF   +TGE      P RRE+GHG LA RA+  +LP 
Sbjct: 364 TKLDEQMVDGAVHSGYNKFILHYNFPAFSTGEARPNRGPGRREVGHGNLALRALKQILPT 423

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDF 473
             + PYT+R+VS+I ES+GSSSMATVC  SLALMDAG+PI  PV+GIAMGL+   +   +
Sbjct: 424 PDELPYTIRVVSDILESNGSSSMATVCAGSLALMDAGIPIKAPVSGIAMGLISDPETGKY 483

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI GDEDH+G MDFKV GT+ GITA QMD+K+ G+S  +M+ AL QAK GR HI N
Sbjct: 484 AILSDILGDEDHIGDMDFKVTGTEKGITACQMDIKVDGLSSELMMEALNQAKAGRDHIRN 543

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD--- 590
           EMSK ++  R       PRV  + I  + I  VIG GGKV++ I + TGA V I++    
Sbjct: 544 EMSKTIAAPREDYKPNAPRVVNIEIDREMIGAVIGPGGKVVQEIQKTTGATVVIEETEKG 603

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + + + +   ++ A + I+ I   PEV ++Y G V  +  +GAFV     +DGL+HIS
Sbjct: 604 GKINVFAVNKESLDQAVKWIKGIVAKPEVGEVYDGIVKAIQPYGAFVEIMPGKDGLLHIS 663

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           ++  E++     +++ G+ V VKL+D D + GK++LS KV+     K 
Sbjct: 664 EIKHEKIDNLEGILEIGEEVKVKLIDIDKKTGKLRLSRKVLLPKPEKE 711


>gi|297202779|ref|ZP_06920176.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
           ATCC 29083]
 gi|197716767|gb|EDY60801.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
           ATCC 29083]
          Length = 740

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/708 (40%), Positives = 415/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELEDAVFDMVVAGRALEDGDV 196

Query: 184 AVLMVELEANQLSEDVV--------LDAIIFGHNECKPVIEAIS--------KLAKMCAK 227
           A++MVE EA + +  +V         + +  G    KP I+ +         K AK   +
Sbjct: 197 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLASKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELASALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  ++VR  ++ +K R+DGR    +R ++A+V  + R HGS++F RG+TQ
Sbjct: 314 EKEISAAYRSLTKQLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I +      EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAVDGPSAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|302344869|ref|YP_003813222.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica ATCC 25845]
 gi|302149149|gb|ADK95411.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica ATCC 25845]
          Length = 742

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/704 (39%), Positives = 426/704 (60%), Gaps = 25/704 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ 
Sbjct: 63  RYPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGVDQPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
           +AASAAL  S +P E      +V  +NG+YV+NP  ++  +  +DL V  T+D ++MVE 
Sbjct: 123 LAASAALAASDIPIEHTTSEVRVARVNGEYVINPTFEQMKEADMDLMVGATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E +++SE  ++ A+   H   KP+ E   +L+K C  +  V  + +    +EE+ + +++
Sbjct: 183 EMDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKRAYEDEVNDEELREELRK 240

Query: 251 DLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFED 297
               +C+        +K  R +  D +K      + + H+  +E +       I   F D
Sbjct: 241 ATYDACYAQAQSGDDDKKHREETYDKIKSDFTEAYDAAHTDLSEDDLEEKHTLIDRYFAD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q   +R  +LD   RMDGR ++ +R I  ++  L   HGSSLF RG+T ++   TLGT+
Sbjct: 301 VQRDSMRRSVLDTGKRMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DE+ VD++       F++HYNF P  TGE        RREIGHG LA R +   +P  A
Sbjct: 361 MDEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--A 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
            FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +
Sbjct: 419 DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK  R HILN M
Sbjct: 479 LSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAAREHILNIM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592
           ++ ++E R ++    PR+  + IP + I  VIG GGK+I+ + E+TGA + I++    G 
Sbjct: 539 TETIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEETGATITIEETDGVGK 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V++++ +   I+AA   I++I  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++
Sbjct: 599 VQVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEI 658

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
             +R+    +  +KEGD + VKLL+ D + GK KLS +V+ +  
Sbjct: 659 DWKRLETVEEAGIKEGDKIKVKLLEIDPKTGKYKLSRRVLLEKP 702


>gi|126663253|ref|ZP_01734251.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
           bacterium BAL38]
 gi|126624911|gb|EAZ95601.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
           bacterium BAL38]
          Length = 719

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/701 (40%), Positives = 420/701 (59%), Gaps = 13/701 (1%)

Query: 8   EIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            I+   GR + +ETGR+A+Q+DG+V+   G+TV+L TVV  R    G DF PLTV+Y+E+
Sbjct: 9   SIDLGDGRSITIETGRLAKQADGSVVVRIGKTVILGTVVSARKASPGIDFLPLTVDYREK 68

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+ PGG+ +RE+RP+++E+L  R++DR +RPLF   Y  E QV+I +M HD +  P
Sbjct: 69  FAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDEDVMP 128

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
             ++ +AASAAL LS +PFE  +  A+V  I+G++++NP   + +   +D+ +  + D++
Sbjct: 129 DALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMMIGASTDSI 188

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEE 243
            MVE E  ++SE  +L+AI F H   K  I A  +LA    K+ +     + S   +  +
Sbjct: 189 AMVEGEMKEISEAEMLEAIKFAHEHIKVQIAAQERLATAFGKKEVRTYETEKSDDAIYAK 248

Query: 244 MSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           +     + +   +     K+ R    D +K+++ + F+ E  + N   +   F     + 
Sbjct: 249 VKAAAYDKIYAIASKGSAKHERSAAFDAVKEEVKALFTEEELAENGDLVSKYFYKTNKEA 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR V LD   R+DGR +  +R I  +V  L   HGS+LF RG+TQA+   TLGT  +   
Sbjct: 309 VRNVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQ 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A+ PYT
Sbjct: 369 IDSPSEQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIP--AENPYT 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +RIVSE+ ES+GSSSMATVC  +LALMDAGV + +PV+GIAMGL+ DG+ F +LSDI GD
Sbjct: 427 IRIVSEVLESNGSSSMATVCAGTLALMDAGVQMIRPVSGIAMGLITDGERFAVLSDILGD 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+KI G+   IM  AL QA+ GRLHIL ++++ L++ 
Sbjct: 487 EDHLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEQALAQARDGRLHILGKLTETLAKP 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSS 599
              +    P++ +  IP   I  +IG GGKVI+ + + TG  + I   D+ G V+I  + 
Sbjct: 547 NTDVKVHAPKIIMRTIPGAFIGALIGPGGKVIQELQKATGTTIVINEVDEQGVVEILGTD 606

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERV 657
              I A    I SI   P + + Y+ +V+K++DFGA V +      + L+H+S+L+ ER 
Sbjct: 607 PDGIAAVLAKIDSIIFKPAMGEAYEVKVIKMLDFGAVVEYTQAPGNEVLLHVSELAWERT 666

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
              +DVV  GD   VK L  D + +  K+S K +     + 
Sbjct: 667 ENVTDVVNMGDVFMVKYLGVDPKTRKEKVSRKALLPRPPRE 707


>gi|317508352|ref|ZP_07966026.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253350|gb|EFV12746.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 731

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/716 (39%), Positives = 410/716 (57%), Gaps = 35/716 (4%)

Query: 3   DVHTVEIE-----WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDF 56
           +VH V  E     +  R +K +TG++A+Q+ G+V A+   +T VL+   Y    K   DF
Sbjct: 7   EVHEVTCELDNGAYGVRTVKFQTGKLAQQAAGSVFASLDEDTTVLSATTYSSQPKSQFDF 66

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+   IL  R+IDR +RP F    +NE Q+++ 
Sbjct: 67  FPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPSFVDGLRNEVQIVVT 126

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LD 175
           V+  +  +   V+++ AASA+  LSGLPF GP+ G +V  I  Q+V  P +++ +G+  D
Sbjct: 127 VLSLNPNALYDVLAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLEGAVFD 186

Query: 176 LFVSG-----------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           + V+G                 T  A+ ++E  A + +E+VV + +       K +  A 
Sbjct: 187 MVVAGRVLDDGDVAVMMVEAEATDHAIKLIEGGATKPTEEVVAEGLEAAKPFLKQLAIAQ 246

Query: 219 SKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
             LA +  KE   +         + E +    +  L  +  +P K  R  +I+++K    
Sbjct: 247 EALAAVAGKEAFELQQFHAYQQDVYEAVDFNARAVLSEALSLPGKLEREARIEEIKSAAK 306

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
                +     EGEI + F  +  K+VR  +L    R+DGR    +R +S ++  + R H
Sbjct: 307 EQLEPQFEG-REGEISAAFRSLNKKLVRERILSDGFRIDGRGLREIRPLSVEISPIPRVH 365

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS+LF RG+TQ + V TL   +  Q VD+L    +  +M HYNF P +TGE  R+G+P R
Sbjct: 366 GSALFQRGETQILGVTTLDLLKMAQEVDALGPVTKRHYMHHYNFPPYSTGETGRVGSPKR 425

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PVLP  A FPY +R VSE   S+GS+SM +VC S+++L+ AGVPI 
Sbjct: 426 REIGHGALAERALVPVLPDQADFPYAIRQVSEALGSNGSTSMGSVCASTMSLLAAGVPIK 485

Query: 457 KPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGL    V     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI
Sbjct: 486 APVAGIAMGLVSGEVNGETKYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGI 545

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
              ++  AL QAK  R  IL+ ++  + E   +L    PR+  + IP D+I  VIG  GK
Sbjct: 546 PSQVLAGALAQAKEARDTILDVIADAIDEP-GELSPHAPRITTIKIPVDKIGEVIGPKGK 604

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKV 630
           +I  I E+TGA ++I+DDGTV +A++S    +AA + I +I    +P+V + Y G VVK 
Sbjct: 605 MINSITEETGANISIEDDGTVYVAATSGDSAQAAIDKINAIANPQLPKVGERYLGTVVKT 664

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             FGAFV     +DGLVHIS+L   +R+A   DVV+ G  + V++ D DDRGKI L
Sbjct: 665 TAFGAFVSLTPGKDGLVHISKLGNGKRIASVEDVVQIGSKLRVEIADIDDRGKISL 720


>gi|288801722|ref|ZP_06407164.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica D18]
 gi|288335764|gb|EFC74197.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica D18]
          Length = 742

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/704 (39%), Positives = 426/704 (60%), Gaps = 25/704 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL V+Y+E+  A G
Sbjct: 3   DGRTISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYAAAG 62

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           + PGG+ +RE +  ++EIL SR++DR +RPLF   Y  E  V + ++  D    P  ++ 
Sbjct: 63  RYPGGFTKREGKANDDEILTSRLVDRVLRPLFPSDYHCEVYVQVMLLSADGVDQPDALAG 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
           +AASA+L  S +P E      +V  +NG+YV+NP  ++  +  +DL V  T+D ++MVE 
Sbjct: 123 LAASASLAASDIPIEHTTSEVRVARVNGEYVINPTFEQMKEADMDLMVGATKDNIMMVEG 182

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E +++SE  ++ A+   H   KP+ E   +L+K C  +  V  + +    +EE+ + +++
Sbjct: 183 EMDEVSEQDLIGALKAAHEAIKPMCEMQEELSKACGTD--VKRAYEDEVNDEELREELRK 240

Query: 251 DLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE-------IVSVFED 297
               +C+        +K  R +  D +K      + + H+  +E +       I   F D
Sbjct: 241 ATYDACYAQAQSGDDDKKHREETYDKIKSDFTEAYDAAHTDLSEDDLEEKHTLIDRYFAD 300

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +Q   +R  +LD   RMDGR ++ +R I  ++  L   HGSSLF RG+T ++   TLGT+
Sbjct: 301 VQRDSMRRSVLDTGKRMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTK 360

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            DE+ VD++       F++HYNF P  TGE        RREIGHG LA R +   +P  A
Sbjct: 361 MDEKMVDNVLEKSYQRFLLHYNFPPFCTGEAKAQRGVGRREIGHGHLAWRGLKGQIP--A 418

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFII 475
            FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPV+GIAMGL+K+   D + +
Sbjct: 419 DFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAV 478

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK  R HILN M
Sbjct: 479 LSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAAREHILNIM 538

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GT 592
           ++ ++E R ++    PR+  + IP + I  VIG GGK+I+ + E+TGA + I++    G 
Sbjct: 539 TETIAEPRAEMKPQVPRIVQLEIPKEFIGAVIGPGGKIIQQMQEETGATITIEETDGVGK 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V++++ +   I+AA   I++I  VPE+ ++Y+G V  +M +G FV     +DGL+HIS++
Sbjct: 599 VQVSAPNKDSIDAALGKIKAIVAVPEIGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEI 658

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
             +R+    +  +KEGD + VKLL+ D + GK KLS +V+ +  
Sbjct: 659 DWKRLETVEEAGIKEGDKIKVKLLEIDPKTGKYKLSRRVLLEKP 702


>gi|228469449|ref|ZP_04054457.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
 gi|228309024|gb|EEK17667.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
          Length = 736

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/706 (40%), Positives = 432/706 (61%), Gaps = 14/706 (1%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     I    GR + +ETG++A+Q+DGAV  T G TV+LA V   +  K   DF PL
Sbjct: 1   MINPVNKTITLPDGRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKDAKPDVDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A+G+ PGG+ RRE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFSAIGRFPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  ++G +V+NP  ++ +   +DL V
Sbjct: 121 SDGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARVDGDFVINPTFEQLERADIDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKD 236
           + T D ++MVE E  ++ E+ +L+AI   H   K   +A  +L++   K  +      + 
Sbjct: 181 AATLDNIMMVEGEMEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMVKREYPAEEQ 240

Query: 237 FSKLEEEMSQMIKEDL-RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
             +L E M + + + + +V+    +K+ R      + ++  + F++E        I   +
Sbjct: 241 DEELRERMQRELYDKIYKVATAGTDKHARGDAFAAIVEEFKAQFTAEELEEKGMIIDRYY 300

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            D++   +R ++LD+  R+DGR ++ +R I  +   L   HGS++F RG+TQ++  VTLG
Sbjct: 301 HDMEKAAMRRMILDEGKRLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLG 360

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T+ DE+ VD +    +  F++HYNF P +TGE       SRREIGHG LA RA+  ++P 
Sbjct: 361 TKSDEKLVDDVLNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIP- 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDF 473
              +PY +R++S+I ES+GSSSMATVC  +LAL DAGV + KPV+GIAMGL+ +  G ++
Sbjct: 420 -EDYPYVIRVMSDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNY 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ILSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GRLHILN
Sbjct: 479 AILSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILN 538

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD---D 590
           ++ +   E+R  +    PR+E + I  + I  VIG GGK+I+GI E++GA VNI++    
Sbjct: 539 KIEEAQPEARPDMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDNY 598

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V+I+SS+   ++AA  M+R I   PEV ++YKG V  VM +G FV F   +DGL+HIS
Sbjct: 599 GIVEISSSNKESLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHIS 658

Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           ++  +R A   +  +KEGDT+ VKL++ D + GK  LS K +    
Sbjct: 659 EIDWKRFATIEETGLKEGDTIDVKLIEIDPKTGKFSLSHKALLPKP 704


>gi|269215563|ref|ZP_06159417.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
           700122]
 gi|269131050|gb|EEZ62125.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
           700122]
          Length = 769

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/690 (41%), Positives = 417/690 (60%), Gaps = 6/690 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  ++E E  G+    ETG +A+Q+ GAVL   GET VL T V  +  KD  DFFPLTV+
Sbjct: 32  EKVSLEFELYGKSYAFETGELAKQATGAVLVRQGETTVLVTSVISKEEKD-YDFFPLTVD 90

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           + E+ YAVG+IPGGYL+RE R ++   L +RM+DR IRP F++ +K E  V+      D 
Sbjct: 91  FMEKMYAVGRIPGGYLKREGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAIDG 150

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFVS 179
           E++P  + +  ASAAL+++  PF+GPV   ++       ++++NP   E +   L+L ++
Sbjct: 151 ENAPDCMCVGGASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELTIA 210

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT+D + MVE  A+Q+ E+ +L A+ FG        E  ++   M   +           
Sbjct: 211 GTKDYISMVEAGADQVGEEDMLAAMNFGQEAIAAFCEKQAEFLSMVDIQKREWPIHVPDA 270

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDI 298
              E      + +  +    +K  R  ++++LK  +    FS E  +    +I +  + +
Sbjct: 271 SIAERVNAHYDAMSAALKDADKQSRIAKVEELKASIKENDFSDEERAAWASDIAAACKAL 330

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   +R ++++   R DGR  E +R +  + G L R HGS LF RG TQ + V TLG   
Sbjct: 331 EKHAMRRMIIETGERADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLGLLN 390

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +D++       +M  YNF P  TGEV RMGAP RRE+GHG LA RAI PVLP   +
Sbjct: 391 EAQRLDTIDPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPNEDE 450

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY++R+VSE+ ES+GSSSMA+ CGS LALMDAGVPI  PV+G+AMGL+K+ D  +ILSD
Sbjct: 451 FPYSIRVVSEVLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDDGVVILSD 510

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKV GT  GITA+QMD K  G+S  I+  AL QAK GR HIL+ M   
Sbjct: 511 IQGLEDFLGDMDFKVTGTPEGITALQMDNKARGLSTEILGRALAQAKEGRAHILSAMLDE 570

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           ++  R +L +  PR+E + IP ++IR VIG GG+ IRGI + TGA + I +DGTV IA+ 
Sbjct: 571 IAAPRAELRDTAPRIETIKIPVEKIREVIGKGGETIRGIQDATGASIEIQEDGTVHIAAV 630

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             A   AA + ++ I   PEV ++Y+G VV +  FGAFV     +DGL+HIS+++  RV 
Sbjct: 631 DQAAGAAAMQAVKDIVKEPEVGEVYEGTVVGIQSFGAFVKLTPNKDGLLHISRMANGRVG 690

Query: 659 KTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
           +  DV+  GDTV V++++ D + GK+ L  
Sbjct: 691 QVEDVLNLGDTVKVEVIEIDSKTGKVSLDR 720


>gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5]
          Length = 744

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/709 (40%), Positives = 438/709 (61%), Gaps = 17/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           +++     I  A GR +++ETG++A+Q+DG+V+   G+T++LATVV  +  K   DF PL
Sbjct: 6   LYNAVRKIITLADGRQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPL 65

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  + G+ PGG+++RE R  ++EIL++R+IDR++RPLF   Y  E  V +N++ 
Sbjct: 66  QVEYKEKYASCGRYPGGFMKREGRANDSEILVARLIDRALRPLFPADYHAEVYVTVNLIS 125

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D +  P  ++ +AASAAL +S +PF GP+   +V  ++G+YV+NP+  E D+  LD+ V
Sbjct: 126 ADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVARLDGEYVINPKFSEMDRVDLDIMV 185

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
            GT D +LMVE E  ++SE+V+L AI F H E K       +L+K   K+  V  +    
Sbjct: 186 GGTIDNILMVEGEMKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHE 243

Query: 239 KLEEEMSQMIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
           + +EE+ Q+I ++L    +        K+ R    + L+ +  + +S E  +     I  
Sbjct: 244 ENDEELRQLIVKELYDKAYAIATSGTMKHEREDMFNALEAEFAARYSEEELAEKAMLIHK 303

Query: 294 VFE-DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            F  D+Q K +R ++LD+ +R+DGR ++ +R I  +V  L   HGS++F RG+TQ++  V
Sbjct: 304 YFHDDVQKKAMRNMILDEGLRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSV 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+  D +       F++HYNF P +TGE       SRREIGHG LA RA+ P+
Sbjct: 364 TLGTKLDEKQKDEVLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPM 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P   + PY +R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ D   
Sbjct: 424 VPLGEENPYAVRVVSDILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISDSQS 483

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  ++  AL+QA++GRLH
Sbjct: 484 GKWAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKGRLH 543

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNI 587
           IL ++++ ++E R     F PR+  + IP D I  VIG GGKVI+ I +    T     +
Sbjct: 544 ILGKLTECIAEPRADYKPFVPRIVQITIPQDMIGAVIGPGGKVIQDIQKTTGTTITITEV 603

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+ G V I     A ++ A   I++I  +PEV + Y G++  ++ FGAFV     +D L+
Sbjct: 604 DNKGIVDIFGQDKAALDGALNRIKAIVAIPEVGETYHGKIRSIVTFGAFVEIMPGKDALL 663

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R     +  +KEGD + VKL+  D +  K KLS KV+    
Sbjct: 664 HISEIDYKRFETMEETGLKEGDEIDVKLIGIDPKTNKFKLSRKVLLPKP 712


>gi|291009326|ref|ZP_06567299.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 747

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/707 (39%), Positives = 412/707 (58%), Gaps = 35/707 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 20  FGTRTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    V+
Sbjct: 80  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++  ASA+  LSGLPF GPV G ++  I+GQ+V  P  ++ +    D+ V+G       A
Sbjct: 140 AINGASASTQLSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERAVFDMVVAGRIVGDDVA 199

Query: 185 VLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKM--------CAKE 228
           ++MVE EA + +        +    + +  G    KP I  + +  +           + 
Sbjct: 200 IMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLCQAQQQLAQAAGKATEEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSS 285
           P+     D +     + Q    +L  +  I  K  R  ++D++K  ++        E   
Sbjct: 260 PVFPAYADDAF--TAVEQAASAELAEALKIASKQERENRLDEIKAAVLEKVGTGEGEQFE 317

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F  +  K+VR  ++  +VR+DGR    +R +SA+VG++ R HGS+LF RG+
Sbjct: 318 GREKEVGAAFRSLTKKLVRQRIIRDQVRIDGRGLTDIRSLSAEVGVIPRAHGSALFERGE 377

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 378 TQILGVSTLNMLRLEQTIDSLSPETTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 437

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY LR VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 438 ERALIPVLPTREEFPYALRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 497

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL
Sbjct: 498 LVSDEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPSEVLAQAL 557

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QA+  R  IL  M++ + +   ++    PRV  ++IP D+I  VIG  GK+I  I E+T
Sbjct: 558 GQARDARFTILEVMAEAIGKP-DEMSPHAPRVTSISIPVDKIGEVIGPKGKMINSITEET 616

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA++ I+DDGT+ + ++     EAA + I +I    +P+V + + G VVK   FGAFV  
Sbjct: 617 GAEITIEDDGTIYVGAADGPSAEAAIDKINAIANPQLPKVGERFLGTVVKTAAFGAFVSL 676

Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGLVHIS+L   +R+ K  DVV  GD + V++ D D RGKI L
Sbjct: 677 LPGKDGLVHISKLGNGKRIGKVEDVVNVGDKLRVEIADIDSRGKISL 723


>gi|329936628|ref|ZP_08286335.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces griseoaurantiacus
           M045]
 gi|329303858|gb|EGG47741.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces griseoaurantiacus
           M045]
          Length = 740

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/717 (39%), Positives = 420/717 (58%), Gaps = 38/717 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F+K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGTRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA +             +E+VV   +       K + +A S LA   AK    
Sbjct: 197 AIMMVEAEATEKTIQLIKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTGAVRPELAQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPFSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 434 ALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              ++    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLNGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDRP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L + V+++  
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL-IPVLEEEE 728


>gi|150026085|ref|YP_001296911.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
           psychrophilum JIP02/86]
 gi|187610264|sp|A6H185|PNP_FLAPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149772626|emb|CAL44109.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 711

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/701 (40%), Positives = 428/701 (61%), Gaps = 13/701 (1%)

Query: 8   EIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            I+   GR + +ETGR+A+Q+DG+V+   G+TV+L TVV  R    G DF PLTV+Y+E+
Sbjct: 9   SIDLGDGRNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLPLTVDYREK 68

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+ PGG+ +RE+RP+++E+L  R++DR +RPLF   Y  E QV+I +M HD E  P
Sbjct: 69  FAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDEEVMP 128

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAV 185
             ++ +AASAAL LS +PFE  +  A+V  I+G++++NP   + +   +D+ +  + D++
Sbjct: 129 DALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMMIGASTDSI 188

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEE 243
            MVE E  ++SE  +L+AI F H   K  I A  +LA    K+ +    K+ S   +  +
Sbjct: 189 AMVEGEMKEISEAEMLEAIKFAHEHIKVQIAAQERLAAAFGKKEVRTYEKEKSDDAIYAK 248

Query: 244 MSQMIKEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKV 302
           + +   + +  ++     K  R    D +K+++ + F+ E  + N   +   F     + 
Sbjct: 249 VKEAAYDKIYNIAKVGSAKQERTAAFDAVKEEVKALFTEEELAENGDLVSKYFYKTNKEA 308

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           VR V LD   R+DGR +  +R I  +V  L   HGS+LF RG+TQA+   TLGT  +   
Sbjct: 309 VRNVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQ 368

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +DS S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT
Sbjct: 369 IDSPSQQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIP--ADCPYT 426

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VSE+ ES+GSSSMATVC  +L+LMDAG+ + +PV+GIAMGL+ DG+ F +LSDI GD
Sbjct: 427 IRVVSEVLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAVLSDILGD 486

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKV GT  GITA QMD+KI G+   IM  AL QA+ GRLHILN +++ L+  
Sbjct: 487 EDHLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILTETLATP 546

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---DDDGTVKIASSS 599
           ++ +  + P++ +  IP + I  +IG GGKVI+ + + TG  + I   D+ G V+I  + 
Sbjct: 547 KVDVKAYAPKIIMRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEMGVVEILGTD 606

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERV 657
            A IEA    I SIT  P++ + Y+ +V+K++DFGA V +      + L+H+S+L+ ER 
Sbjct: 607 PAGIEAVLAKIESITFKPQIGEAYEVKVIKMLDFGAVVEYTAVPGNEVLLHVSELAWERT 666

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
              +DVV  GD   VK L  D + +  K+S K +     + 
Sbjct: 667 ENVTDVVNMGDVFMVKYLGLDPKTRKEKVSRKALLPRPPRE 707


>gi|134102361|ref|YP_001108022.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|187611285|sp|A4FM22|PNP_SACEN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133914984|emb|CAM05097.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
           nucleotidyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 750

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/707 (39%), Positives = 412/707 (58%), Gaps = 35/707 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 23  FGTRTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYA 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    V+
Sbjct: 83  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 142

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++  ASA+  LSGLPF GPV G ++  I+GQ+V  P  ++ +    D+ V+G       A
Sbjct: 143 AINGASASTQLSGLPFSGPVGGTRMALIDGQWVAFPTYEQLERAVFDMVVAGRIVGDDVA 202

Query: 185 VLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKM--------CAKE 228
           ++MVE EA + +        +    + +  G    KP I  + +  +           + 
Sbjct: 203 IMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTLCQAQQQLAQAAGKATEEF 262

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF---SSEHSS 285
           P+     D +     + Q    +L  +  I  K  R  ++D++K  ++        E   
Sbjct: 263 PVFPAYADDAF--TAVEQAASAELAEALKIASKQERENRLDEIKAAVLEKVGTGEGEQFE 320

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F  +  K+VR  ++  +VR+DGR    +R +SA+VG++ R HGS+LF RG+
Sbjct: 321 GREKEVGAAFRSLTKKLVRQRIIRDQVRIDGRGLTDIRSLSAEVGVIPRAHGSALFERGE 380

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 381 TQILGVSTLNMLRLEQTIDSLSPETTKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 440

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY LR VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 441 ERALIPVLPTREEFPYALRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 500

Query: 466 LVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           LV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL
Sbjct: 501 LVSDEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPSEVLAQAL 560

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QA+  R  IL  M++ + +   ++    PRV  ++IP D+I  VIG  GK+I  I E+T
Sbjct: 561 GQARDARFTILEVMAEAIGKP-DEMSPHAPRVTSISIPVDKIGEVIGPKGKMINSITEET 619

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA++ I+DDGT+ + ++     EAA + I +I    +P+V + + G VVK   FGAFV  
Sbjct: 620 GAEITIEDDGTIYVGAADGPSAEAAIDKINAIANPQLPKVGERFLGTVVKTAAFGAFVSL 679

Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGLVHIS+L   +R+ K  DVV  GD + V++ D D RGKI L
Sbjct: 680 LPGKDGLVHISKLGNGKRIGKVEDVVNVGDKLRVEIADIDSRGKISL 726


>gi|239928583|ref|ZP_04685536.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291436909|ref|ZP_06576299.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339804|gb|EFE66760.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 739

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/708 (39%), Positives = 413/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRTLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ + +          K  A+
Sbjct: 197 AIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLAAKAAKPTAE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELAQALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 434 ALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              ++    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDRP-DEMSPHAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|260206095|ref|ZP_05773586.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis K85]
 gi|289575481|ref|ZP_06455708.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis K85]
 gi|289539912|gb|EFD44490.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis K85]
          Length = 752

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/713 (39%), Positives = 415/713 (58%), Gaps = 40/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE Q+++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----ISKLAKMCAKE-PIV 231
           ++MVE EA +   ++V           +  G    KP I A      +LA    K     
Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261

Query: 232 IDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           +D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +    
Sbjct: 262 VDFLVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG-R 320

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 321 EKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQ 380

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 381 ILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAER 440

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGLV
Sbjct: 441 ALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLV 500

Query: 468 KDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   
Sbjct: 501 SDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQ 560

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI 
Sbjct: 561 VLAGALEQAKDARLTILEVMAEAIDRP-DEMSPYAPRVTTIKVPVDKIGEVIGPKGKVIN 619

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDF 633
            I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK  DF
Sbjct: 620 AITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTDF 679

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 680 GAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 732


>gi|302554539|ref|ZP_07306881.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472157|gb|EFL35250.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 738

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/708 (40%), Positives = 413/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELEDAVFDMVVAGRTLEDGDV 196

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA +             +E+VV   +       K + +A + LA   AK    
Sbjct: 197 AIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQADLASKAAKPTGE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALTAAVKPELASALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS++F RG+TQ
Sbjct: 314 EKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              ++    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I +      EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAVDGPSAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVVGVGAKVQVEIAEIDSRGKLSL 720


>gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 730

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/702 (39%), Positives = 434/702 (61%), Gaps = 19/702 (2%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E E+ G+ L +E G++A+Q+DGAV+  Y ++V+L TV  +     G DF PLTV YQ
Sbjct: 4   RRWEREFFGQKLVIENGKMAKQADGAVVLRYADSVLLTTVNGNEQAVPGTDFLPLTVEYQ 63

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           E+ YA GKIPGG+L+RESRP++N +L +R+IDR IRPLF    +NE QVI+ V+  D ++
Sbjct: 64  EKFYAAGKIPGGFLKRESRPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDN 123

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            P +  ++A+S  L +S +PFEG V G QV Y++G+YV+ P  DE +   LD+ V+GT+D
Sbjct: 124 PPDIWGIMASSLVLNISPIPFEGIVAGVQVGYVDGKYVVFPSADELERSELDIVVAGTED 183

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--LE 241
           AV MVE EA ++SE+V++ A+   H   K ++    ++      E   ++     +  LE
Sbjct: 184 AVAMVEGEAKEVSEEVMVGALEAAHEAIKSLVAFQKEIISEFQTEKWELEIPAAPEGFLE 243

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF--------SSEHSSWNEGEIVS 293
              + + +  L      P K  + K +   + +++  F        S E    N G +  
Sbjct: 244 SFDTLVDRNKLAEIMLTPGKKNKDKALKTYRDELIEQFIGKAKETWSEEEIEDNIGFVKD 303

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            + DI+ KV+R  ++++ VRMDGR    +R I+ ++ LL R HGS+LF RG+TQ++ +VT
Sbjct: 304 FYHDIEKKVMRRRVIEEDVRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVT 363

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ VD++       FM+HYNF P +TGEV R+  P RREIGHG LA R++  ++
Sbjct: 364 LGATMDEQIVDTMFEEGSKSFMLHYNFPPFSTGEVKRLRGPGRREIGHGHLAERSLKNIV 423

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+R+VSE+ ES+GSSSMATVC  SL+LM AGVP+ K VAG+AMG++++ +  
Sbjct: 424 PNGESFPYTIRVVSEVLESNGSSSMATVCSGSLSLMAAGVPMEKHVAGVAMGMIQEPEKT 483

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           ++L+DI G+EDH+G MDFKV GT  GITA QMD+K+ G+S  IM  AL+QA+  RL IL+
Sbjct: 484 VVLTDILGNEDHMGDMDFKVTGTRDGITAFQMDVKVSGVSSEIMTKALEQARLARLKILD 543

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GT 592
            M + + E R  + ++ P +  + +P ++I  +IG GGKVI+ +  +  + + IDD+   
Sbjct: 544 LMYEAIPEPRKFVSDYAPIIRTINLPYEKIGEIIGPGGKVIKKLSSEYDSTIFIDDERSQ 603

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            KI  S+  +++   ++I +I    +  ++++G++ +   +G FV     + GL+HIS++
Sbjct: 604 AKIVGSNREKLDQLEKVIDAIISEVKPGQLFEGKISRAEAYGFFVEIAPGKTGLLHISKM 663

Query: 653 STERVAKTSDVV---KEGDTVWVKLLDFDDRGKIKLSMKVVD 691
                A   D +   K GDT+ V++   D  GKI L ++ V+
Sbjct: 664 G----ASGKDFLREHKVGDTIAVEVAGTDQMGKISLKLEGVE 701


>gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 703

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/683 (39%), Positives = 430/683 (62%), Gaps = 13/683 (1%)

Query: 7   VEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           V+ E   + P+ +E  + A Q+D ++L + G T VL TV        G DF PL+V+Y+E
Sbjct: 3   VKAEIGNQDPIYIEANKYAHQADSSILISQGGTKVLVTVCVSEEPLCGIDFAPLSVDYRE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R++A GKIPGG+++RE +PT+ E+LISR+IDR +RPL  K + NE  V    +  D +  
Sbjct: 63  RSFAWGKIPGGFIKREGKPTDREVLISRVIDRPLRPLMPKGFLNEVVVTCLTLSADDKYD 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA 184
           P V+++  ASAAL+ S +PFEGP+ G +V  +NG++++NP  ++ +   +D+ ++ ++DA
Sbjct: 123 PDVLAITGASAALVSSSVPFEGPIAGMRVCRVNGEFIINPTYEQRKNSDMDIVMALSKDA 182

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLEEE 243
           ++MVE  A ++ E V+LDA+ FG  + + +I+A  +L      E   I        +  +
Sbjct: 183 IVMVEGGAKEVEESVLLDALFFGLEKGQTLIKAQEELVDSLKPEKKPIGHIGLSDDMANK 242

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           + ++    +  +  I +K  R K + D+  + +       S   E + +  F+D++++++
Sbjct: 243 LKEIASSKILEAFSIEDKKERSKALKDVYAQAMQKLGI--SKEQEFDFLVSFKDLESQLM 300

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +L  K R+DGR    +R I+ ++  L+R HGS++F RG TQA+  VTL  +++ Q V
Sbjct: 301 REQILKYKKRIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLV 360

Query: 364 DSL-SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +++  G     FM+HYNF P +TGE    G P RREIGHG LA RA+ P+L +   FPY 
Sbjct: 361 ETIFEGETFKRFMLHYNFPPFSTGEARPWGPPRRREIGHGALAERALEPLLAKEEDFPYI 420

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +R+VS+I ES+GSSSMATVC  SLAL DAGVP+ K VAGIAMGL+KDGD+F+IL+DI GD
Sbjct: 421 IRVVSDILESNGSSSMATVCAGSLALFDAGVPMKKHVAGIAMGLIKDGDNFVILTDILGD 480

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT  G+T++QMD+KI G+S++IM+ AL QAK  R+ IL+++ + + E 
Sbjct: 481 EDHLGDMDFKVAGTRDGVTSVQMDIKIKGLSKDIMIKALNQAKEARMFILDKLYEAIPEP 540

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
             ++ ++ P+ ++M IP D++  VIG  GK I+ I EQ GA V I D     I + ++  
Sbjct: 541 NKEVSKYAPKAQVMKIPEDKVGLVIGPAGKNIKYIKEQFGASVWI-DGANAYINAPTIEA 599

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +  A + I S+    EV  +Y+G+V++V ++G FV     + GL+H S ++     K + 
Sbjct: 600 VNKAADFINSLIQEVEVGGVYEGKVIRVENYGLFVEVLPGKVGLLHASAMT----EKPT- 654

Query: 663 VVKEGDTVWVKLLDFDDRGKIKL 685
            +  GDT+ VK++  D++ ++ L
Sbjct: 655 -INVGDTIKVKVMAIDEQNRLNL 676


>gi|325955410|ref|YP_004239070.1| polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
           16922]
 gi|323438028|gb|ADX68492.1| Polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
           16922]
          Length = 721

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/698 (39%), Positives = 433/698 (62%), Gaps = 17/698 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR + +ETG+ A+Q+DG+V+   G+T++LATVV ++   +G DF PLTV+Y+E+ YA G
Sbjct: 14  DGREISIETGKYAKQADGSVIVRMGDTMLLATVVANKEANEGVDFLPLTVDYREKFYAGG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG + RRE++P+++E+L  R++DR +RP+F + +  E QV+I+++ +D +  P  ++ 
Sbjct: 74  RIPGNFFRREAKPSDDEVLTMRLVDRVLRPMFPEDFHAEVQVMISLISYDEKVMPEALAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           +AASAA+ ++ +PF   +  A+V  +NG+ ++NP  ++ +Q  +D+ V  ++++V+MVE 
Sbjct: 134 LAASAAIAITDIPFT-LISEARVIRLNGELMINPSREQLEQADIDIMVGASKESVVMVEG 192

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKE 250
           E  ++SE  +LDAI F H E K  IEA  +LA+   K             +EE+ + +  
Sbjct: 193 EMEEISEREMLDAIQFAHEEIKKQIEAQERLAEKVGK-SFPKREYSHENHDEEIREKVWN 251

Query: 251 DLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWN--EGEIVSVFEDIQAKVV 303
                 +       +K+ R  + + + ++ ++ +  +          + + F D+Q + V
Sbjct: 252 FGYQKYYDIAKHPSDKHERNDKFEAIVEEFLAQYEEDEEELARVTPFVKTYFHDVQKEAV 311

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++L++ +R+DGRD +T+R I  +V +L   HGSS+F RG+TQA+  +TLG+  D   V
Sbjct: 312 RQLILEEGIRLDGRDPKTIRPIWTEVDILPGAHGSSVFTRGETQALAALTLGSSRDANLV 371

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D +       F +HYNF P +TGE   +   SRREIGHG LA+RA+  ++P     PY +
Sbjct: 372 DGVVLNHEERFFLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALTKMIP--EDNPYVI 429

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISG 481
           R+VSE+ ES+GSSSMATVC  +LALMDAG+PI KPV+GIAMGL+ D     + +LSDI G
Sbjct: 430 RLVSEVLESNGSSSMATVCAGTLALMDAGIPIKKPVSGIAMGLITDTKSGKWTVLSDILG 489

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+K+ G+S  IM  AL+QA+ GRLHIL+++++ L+ 
Sbjct: 490 DEDHLGDMDFKVTGTKDGITACQMDIKVQGLSMEIMEKALEQAREGRLHILDKLTETLAT 549

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASS 598
            R  L    P++ +M IP + I  VIG GGK+I+ + ++T   + + ++   G V+I   
Sbjct: 550 PRPNLKPNAPKIALMEIPKEFIGAVIGPGGKIIQELQKETDTVIVLTEEENFGRVEINGV 609

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +  +I+     I+ I  VPEV   Y   V  +  FGAFV      +GLVHIS++  +R+ 
Sbjct: 610 NQEKIDQVIARIKQIAFVPEVGATYDAVVKSIKPFGAFVEISKGIEGLVHISEIEHKRLE 669

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           K  D +   D + VK L +DD+ K+KLS K +     +
Sbjct: 670 KVEDALGINDKIQVKFLGYDDKKKMKLSRKALLPKPER 707


>gi|67921975|ref|ZP_00515491.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67856191|gb|EAM51434.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 715

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/698 (42%), Positives = 439/698 (62%), Gaps = 20/698 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ GAVL    +T VL T    +  ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKLGLLAPQAGGAVLIQSQDTAVLVTATTTK-GREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG+LRRE RP E  ILISR+IDR +RPLF   ++ + Q+I   +  D E  P
Sbjct: 65  LYAAGRIPGGFLRREGRPPERAILISRLIDRPLRPLFPNWWRKDIQIIATTLSMDEEVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  +S A++ +G+PF GP+   +V  I   +++NP   E + G LDL V+G+ D V
Sbjct: 125 DVLAVTGSSIAVIQAGIPFYGPMAAVRVGLIGDDFIINPTYREVENGDLDLVVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI----SKLAKMCAK-EPIVIDSKDFSKL 240
           +MVE  AN L E  +++AI FG+   + +I A      +L     K EP   +      +
Sbjct: 185 VMVEAGANTLPEQDIIEAIDFGYEAVRDLIGAQYDIMEELGMEIGKAEPPSTNEVLEKFI 244

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK----KMVSYFSSEHS-----SWNEGEI 291
           E++ +  IK+ L    +   K  R   +D++K+    + +S  S E       + +   +
Sbjct: 245 EKQAADSIKKVLVQ--YDLSKADRDTALDNIKETAIEEAISELSEEDPIKVATTEDPKAV 302

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIV 350
            ++++ +  K++R+ ++ + +R+DGR  + VR I+ +VGL+  R HGS+LF RG TQ   
Sbjct: 303 GNLYKGLTKKLMRSQIISEGIRVDGRKLDEVRPIACRVGLMPPRVHGSALFTRGLTQVFS 362

Query: 351 VVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           + TLGT  D Q + D L       ++ HYNF P + GE   + +P RREIGHG LA RAI
Sbjct: 363 LATLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPFSMGETKPLRSPGRREIGHGALAERAI 422

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PVLP   +FPY +R+VSE+  S+GS+SM +VCGS+LALMDAGVPI KPV+G AMGL+++
Sbjct: 423 LPVLPPQEEFPYVVRVVSEVVSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIRE 482

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
           G +  IL+DI G ED LG MDFKVAGTDSGITA+QMDMKI G++ +I+  A+QQA   RL
Sbjct: 483 GKEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLTMDIVAKAIQQALPARL 542

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HIL++M   +++ R  L  F PR+  M I P+QI  VIG GGK I+ I EQTG+K++I D
Sbjct: 543 HILDKMLATIAQPRRDLSPFAPRLLTMKIDPEQIGLVIGPGGKTIKSITEQTGSKIDIAD 602

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DGTV IA+    + E AR++I ++T   +  ++Y G+V +++  GAFV     ++G++HI
Sbjct: 603 DGTVTIAAIQARKAEKARDLIFNMTRKLKEGEVYLGRVTRIIPIGAFVEVLPGKEGMIHI 662

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           SQL+  RV K  + V  GD V VK+ + D++G++ L+ 
Sbjct: 663 SQLAERRVGKVEEEVAVGDEVVVKVREIDNKGRLNLTR 700


>gi|163754268|ref|ZP_02161391.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
 gi|161326482|gb|EDP97808.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
          Length = 746

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/703 (39%), Positives = 427/703 (60%), Gaps = 22/703 (3%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   +   DF PLTV+Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYK-QSDVDFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD E  P 
Sbjct: 69  AAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDPEVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS  PFE  +  A+V  ING++++NP   + ++  +D+ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDFPFECAISEARVGRINGEFIINPTRAQLEESDIDMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE E +++SE+ + +AI F H   K    A  +LA+   K+       +  + +EE++Q
Sbjct: 189 MVEGEMDEISEEEMTEAIKFAHEAIKVQCAAQLRLAEAIGKK--ETREYEPERADEELAQ 246

Query: 247 MIKEDLRVSCFI-----PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            I +      +        K  R     ++K+++++ F+ E      G I   +   +  
Sbjct: 247 KIHDMAYDKVYAVAKAGSSKKERGMAFSEIKEEIIASFTEEEIEDFGGLISKYYSKAEKA 306

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR + L++ +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +  
Sbjct: 307 AVRDLTLNEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREAN 366

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D  S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P     PY
Sbjct: 367 QIDMPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVP--EDCPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDI 479
           T+R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ D D   + +LSDI
Sbjct: 425 TVRVVSEVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDADSGKYAVLSDI 484

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL +++  +
Sbjct: 485 LGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTI 544

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVK 594
           +     +    P++    IP D I  +IG GGKVI+ + ++T   + I++D     G V+
Sbjct: 545 AAPNENVKAHAPKMITRTIPGDYIGALIGPGGKVIQELQKETNTTIVINEDPVTEEGIVE 604

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQL 652
           I  +    I+A    I SIT  PE   IY+ +VVK++DFGA V +      + L+HIS+L
Sbjct: 605 ILGTDQEGIDAVLAKIDSITFKPEKGSIYEVKVVKMLDFGAVVEYTEAPGNEVLLHISEL 664

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           + ER    SD+VK GD + VK    D + +  K+S K +    
Sbjct: 665 AWERTNNVSDIVKMGDILDVKYFGIDPKTRKEKVSRKAILPKP 707


>gi|217035383|pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED
           Pnpase
          Length = 559

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/545 (49%), Positives = 374/545 (68%), Gaps = 2/545 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 9   NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 68

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  + 
Sbjct: 69  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 128

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 129 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 188

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           + AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       +  ++ L
Sbjct: 189 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 248

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  +   I+ 
Sbjct: 249 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 308

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 309 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 368

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 369 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 428

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 429 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 488

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++
Sbjct: 489 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 548

Query: 541 ESRLQ 545
             R  
Sbjct: 549 APRGD 553


>gi|303232220|ref|ZP_07318919.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
           PB189-T1-4]
 gi|302481630|gb|EFL44691.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
           PB189-T1-4]
          Length = 760

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/692 (40%), Positives = 413/692 (59%), Gaps = 10/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             + E +   +  KLETG +A+Q+ G  L + G++ V  TVV  +  KD  DFFPLTV++
Sbjct: 3   KVSYEFDLYDKHYKLETGELAKQATGECLVSCGDSTVNVTVVVSKERKD-YDFFPLTVDF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YAVG+IPGGYL+RESRPTE   L +RMIDR IRP F   ++NE Q++   +  D  
Sbjct: 62  IEKMYAVGRIPGGYLKRESRPTEKATLTARMIDRPIRPAFPDGFRNEVQIVAMPLVADQF 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQ-GSLDLFVSG 180
           +    + ++ AS A+   G+PFEGP+   ++      G++++NP  +E +   LDL ++G
Sbjct: 122 NPVDTICVMGASCAMRTGGVPFEGPLACVRIGRNTQTGEFIVNPTYEERKHSDLDLELAG 181

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIVIDSKDFS 238
           +   + M+E  A ++SE+ +L A+ FG            K     A+   PI   + +  
Sbjct: 182 SATFISMLEAAAQEISEEDMLSAMAFGQQAIAAFCAEQEKFFAKVAEVNGPIEEHTYELD 241

Query: 239 KLEEEMSQMIK---EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +  E +   +    +++  +    +K  R ++++ LK  +V  F+ E        + +  
Sbjct: 242 EPIEALHNRVFAHFDEMSAALKDDDKLHRIEKVEKLKAAIVDEFTEEEQEEWAVALPAEL 301

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + ++   +R ++++   R+DGR +  VR +  +   L   HGS LF RG TQ + V TLG
Sbjct: 302 KSLEKHAMRLMVVETGERVDGRSATEVRPLMIKPDYLPLVHGSGLFQRGQTQVLSVATLG 361

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D++   +   +M HYNF P  TGE  R+G+P RREIGHG LA RA+ PV+P 
Sbjct: 362 MLSEWQRLDTIEPQEGKRYMHHYNFPPYCTGETGRLGSPKRREIGHGNLAERALLPVIPS 421

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPY +R+VSE+ ES+GSSSMA+ CGS+LALMDAGVPI +PV+G+AMGL+++    ++
Sbjct: 422 EDEFPYAIRVVSEVMESNGSSSMASTCGSTLALMDAGVPIVRPVSGVAMGLIQEEGKTVV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED LG MDFKV GT  GITAMQMD K  G++  I+  ALQQA  GR+ IL+ M
Sbjct: 482 LTDIQGLEDFLGDMDFKVTGTTKGITAMQMDNKATGLTPEILRQALQQAHVGRMEILDAM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +   R    E  P++  + IP D IR+VIG GGKVIR I ++TGA V I +DG+V I
Sbjct: 542 LAQIPVPRAHTKETAPKIISIKIPVDTIRDVIGSGGKVIRSIQDETGATVEIQEDGSVFI 601

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A       +AA + I  I  VPEV + Y G+VV +  FGAFV     +DGL+HIS+++  
Sbjct: 602 AGV-GEAAQAAADRINMIIKVPEVGEEYHGRVVGLQPFGAFVELLPGKDGLLHISRVAQG 660

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           RV K  DV+  GD V V +L+ DD+GKI L  
Sbjct: 661 RVEKIEDVLSIGDEVNVVVLEVDDKGKISLDR 692


>gi|290957009|ref|YP_003488191.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces scabiei 87.22]
 gi|260646535|emb|CBG69632.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces scabiei 87.22]
          Length = 741

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/708 (40%), Positives = 414/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 79  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  IN Q+V  P   E +    D+ V+G        
Sbjct: 139 AINAASASTQLAGLPFSGPIGGVRVALINNQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 198

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA +             +E+VV   +       K + +A + LA   AK    
Sbjct: 199 AIMMVEAEATEKTIQLVQGGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLASKAAKPTGE 258

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E +S  +K++L  +  I  K  R  ++D +K         +     
Sbjct: 259 FPVFLDYQD--DVLEALSAAVKDELTQALTIAGKQDREAELDRVKGLAAEKLLPQFEG-R 315

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 316 EKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 375

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 376 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 435

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 436 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 495

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              +     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 496 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 555

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 556 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 614

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I +   ++ EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 615 EITIEDDGTIYIGAQQGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 674

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 675 GKDGLLHISQIRKLAGGKRVENVEDVVGVGSKVQVEIAEIDSRGKLSL 722


>gi|118617705|ref|YP_906037.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium ulcerans
           Agy99]
 gi|118569815|gb|ABL04566.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium ulcerans Agy99]
          Length = 753

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/730 (38%), Positives = 419/730 (57%), Gaps = 50/730 (6%)

Query: 1   MFDVHTVEIE---WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           MF+  T  I+   +  R ++ ETGR+A+Q+ G+V+    +  ++L+     ++ K+  +F
Sbjct: 1   MFEA-TATIDNGSFGTRTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNF 59

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ 
Sbjct: 60  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVT 119

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD 175
           ++  D      VV++ AASA+  L+GLPF GPV G +V  I+GQ+V  P +++ +    D
Sbjct: 120 ILSLDPNDLYDVVAINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFD 179

Query: 176 LFVSGT----------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA 217
           + V+G             A++MVE EA     ++V           +  G    KP I A
Sbjct: 180 MVVAGRIVGTEEDGTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAA 239

Query: 218 ----ISKLAKMCA-------KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                 +LA           + P+  +  D   +   +S +  + L  +  I  K  R +
Sbjct: 240 LCTAQQELADASGATVKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQ 297

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
           + +++K +++   +  +    E EI + F  +  K+VR  ++    R+DGR    +R +S
Sbjct: 298 RTEEIKAEVLERLADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGVTDIRALS 356

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
           A+V L+ R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TG
Sbjct: 357 AEVALVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTG 416

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E  R+G+P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L
Sbjct: 417 ETGRVGSPKRREIGHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTL 476

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDS 498
           AL++AGVP+  PVAGIAMGLV D  +        F+ L+DI G ED  G MDFKVAGT  
Sbjct: 477 ALLNAGVPLKAPVAGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKD 536

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            +TA+Q+D K+ GI   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +
Sbjct: 537 FVTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMAEAIDTP-DEMSPYAPRVTTIKV 595

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DV 616
           P D+I  VIG  GKVI  I E+T A+++I+DDGTV + ++     +AA + I +I    +
Sbjct: 596 PVDKIGEVIGPKGKVINSITEETRAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQL 655

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P V + + G VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ 
Sbjct: 656 PTVGERFLGTVVKTTDFGAFVALLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIA 715

Query: 676 DFDDRGKIKL 685
           D D RGKI L
Sbjct: 716 DIDKRGKISL 725


>gi|289754889|ref|ZP_06514267.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289695476|gb|EFD62905.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis EAS054]
          Length = 752

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/713 (39%), Positives = 415/713 (58%), Gaps = 40/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    ++E Q+++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVTILSLDPGDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +D+ ++   D+ V+G       A
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----ISKLAKMCAKE-PIV 231
           ++MVE EA +   ++V           +  G    KP I A      +LA    K     
Sbjct: 202 IMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPT 261

Query: 232 IDSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           +D   F    E++    S +  ++L  +  I  K  R ++ID++K ++V   +  +    
Sbjct: 262 VDFPVFPDYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEG-R 320

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ +    +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 321 EKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQ 380

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 381 ILGVTTLDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAER 440

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGLV
Sbjct: 441 ALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLV 500

Query: 468 KDG------------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D               F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   
Sbjct: 501 SDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQ 560

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GKVI 
Sbjct: 561 VLAGALEQAKDARLTILEVMAEAIDRP-DEMSPYAPRVTTIKVPVDKIGEVIGPKGKVIN 619

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDF 633
            I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK  DF
Sbjct: 620 AITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTDF 679

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 680 GAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 732


>gi|169630188|ref|YP_001703837.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium abscessus
           ATCC 19977]
 gi|226702665|sp|B1MD62|PNP_MYCA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169242155|emb|CAM63183.1| Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium abscessus]
          Length = 755

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/713 (39%), Positives = 417/713 (58%), Gaps = 42/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A Q+ G+V+A   + T++L+T    ++ KD  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLALQAAGSVVAYLDDETMLLSTTAASKTPKDHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  +      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLNPADLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AASA+  L+GLPF GPV G +V  I GQ+V  P +++ ++   D+ V+G        
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIEGQWVAFPTVEQLEKAVFDMVVAGRKVGTAGD 201

Query: 181 ------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
                       T + + +++  A   +E VV + +         +  A  +LA   AK 
Sbjct: 202 SDVAIMMVEAEATDNVIALIDGGAGAPTETVVAEGLEAAKPFIAALCTAQEELAGSAAKP 261

Query: 229 ----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
               P+  D +D   +   ++ +  E L  +  I  K  R ++ D++K  ++     E  
Sbjct: 262 TGEFPLFPDYQD--DVYAAVAAVATEPLSQALSIAGKAERDEKTDEIKVDVLGRLQ-EGF 318

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E EI + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 319 DGREKEIGAAFRSLTKKLVRQRILKDQFRIDGRGVTDIRALSAEVAVIPRAHGSALFERG 378

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 379 ETQIMGVTTLDMIKMAQQVDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL 438

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAM
Sbjct: 439 AERALIPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAM 498

Query: 465 GLVKDGDD---------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           GLV D  +         F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   
Sbjct: 499 GLVSDDIELADGTAERRFVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQ 558

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QAK  R  IL  M++ +     ++  + PR+  + +P D+I  VIG  GK+I 
Sbjct: 559 VLAAALSQAKDARTTILEVMAEAIDAP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMIN 617

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDF 633
            I E+TGA ++I+DDGTV + ++  A  +AA + I +I    +P++ + + G VVK  DF
Sbjct: 618 SITEETGANISIEDDGTVFVGAADGASAQAAIDKINAIANPQLPKIGERFLGTVVKTTDF 677

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     RDGLVHIS+L   +R+AK  DVVK GD + V++ D D+RGKI L
Sbjct: 678 GAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVKVGDKIQVEIADIDNRGKISL 730


>gi|86141304|ref|ZP_01059850.1| putative polyribonucleotide nucleotidyltransferase
           [Leeuwenhoekiella blandensis MED217]
 gi|85831863|gb|EAQ50318.1| putative polyribonucleotide nucleotidyltransferase
           [Leeuwenhoekiella blandensis MED217]
          Length = 741

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/710 (39%), Positives = 425/710 (59%), Gaps = 19/710 (2%)

Query: 1   MFDVHTVE-IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      E I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   +   DF P
Sbjct: 1   MIPKTFKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYK-QSDVDFLP 59

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M
Sbjct: 60  LTVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLM 119

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLF 177
            HD E  P  ++ +AASAA+ LS  PFE  +   +V  +NG++++NP   +  +  +D+ 
Sbjct: 120 SHDDEVMPDAMAGLAASAAIQLSDFPFECAISEVRVGRVNGEFIINPSRAQLAESDIDMV 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +  + D+V+MVE E +++SE+ + +AI   H   K   EA  +LA+   K+P      + 
Sbjct: 180 IGASADSVMMVEGEMDEISEEEMTEAIKAAHEAIKVQCEAQIRLAEAFGKKPTREYEPEV 239

Query: 238 --SKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
             ++LE+++  +  + +   +     K+ R    D +K+++   FS E        I   
Sbjct: 240 EDAELEKKVYDLTYDKVYEVAKAGSSKHERSTAFDAIKEEVKGTFSEEDLEAFGDLISKY 299

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F   +   VR + L++ +R+DGR +  +R I  +   L   HGSS+F RG+TQA+  VTL
Sbjct: 300 FYKAEKAAVRDLTLNEGLRLDGRKTTEIRPIWCETDYLPSVHGSSIFTRGETQALATVTL 359

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  +   +D  S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P
Sbjct: 360 GTSREANQIDMPSYEGEETFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMIP 419

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDD 472
             A  PYT+R+VSEI ES+GSSSMATVC  ++A+MDAGV + KPV+GIAMGL+ D     
Sbjct: 420 --ADCPYTVRVVSEILESNGSSSMATVCAGTMAIMDAGVKLKKPVSGIAMGLITDVETGK 477

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL QA+ GRLHIL
Sbjct: 478 YAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVKALHQARDGRLHIL 537

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
           N ++  +SE R  + ++ P++    I  + I  +IG GGKVI+ + ++TG  + I++D  
Sbjct: 538 NHLTDTISEPREDVKDYAPKMVTTRIANEYIGALIGPGGKVIQELQKETGTTIVINEDPV 597

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDG 645
              G V+I  +    I A    I SIT  P+V + YK +V+K++DFGA V +      + 
Sbjct: 598 TEEGIVEILGTGTEGINAVLAKIDSITFKPKVGESYKVKVIKMLDFGAVVEYLAAPGNEV 657

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           L+H+S+L+ ER    SDVV  GD   VK    D R +  K+S K +    
Sbjct: 658 LLHVSELAWERTENVSDVVNMGDEFEVKYFGIDSRTRKEKVSRKALLPKP 707


>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
 gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
          Length = 961

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/698 (38%), Positives = 399/698 (57%), Gaps = 12/698 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E   R +  ETG+IAR ++G+V+    ET VL+TV   +     +DF PLTV+
Sbjct: 54  ETFREEFEIGSRLITFETGKIARFANGSVVLGMEETKVLSTVTSSK-GDSVRDFLPLTVD 112

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ +A G IP  YLRRE  P E E+L  R+IDR IRPLF   + +E QV+ +V+  D 
Sbjct: 113 YQEKQFAQGVIPSTYLRREGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDG 172

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
              P V++  A SAALMLS +P+ GP+   ++  I GQ+V+NP +DE     L+L  + T
Sbjct: 173 RRDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGQFVVNPTMDELSLSDLNLVYACT 232

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +D  LM++++A  ++E  +   +   H E    +E   +LA    K          S   
Sbjct: 233 KDKTLMIDVQAGGIAEKDLEAGLRLAHPEAVKYLEPQIRLAAKAGKHKKDYKLSLVSDRT 292

Query: 242 EEMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            E  + + E    + F      K+ R + +D++ ++       E  + +   +  V + +
Sbjct: 293 LEKVRNLTEAKIEAVFTDPSYGKFERGEALDNIAQEAKRTLEEECDTESLTVLSKVVDRV 352

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR  ++ +  R+DGR  + VR +  + G L   HGSSLF RGDTQ +  VTLG   
Sbjct: 353 RKGVVRNRIIAEGFRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPR 412

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +DSL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP    
Sbjct: 413 DAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDD 472

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------- 471
           FPYT+RI SE+  SDGS+SMATVCG S+A+MDAG+P+ + VAG+++GLV + D       
Sbjct: 473 FPYTVRINSEVMASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVGLVSEVDPSTGEIK 532

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+ I++DI G EDHLG MDFK+AGT  G+TA+Q+D+K  GI  +I+   L+ A +GRL I
Sbjct: 533 DYRIVTDILGLEDHLGDMDFKIAGTRKGVTAVQLDIKPAGIPLDIICECLEPALKGRLQI 592

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L  M + +S  R Q    +PR+  +    D +R +IG  G + R I E TGA++++ D+ 
Sbjct: 593 LARMDQEISAPRTQDHRNSPRLATLKFSNDALRRLIGPLGVLKRKIEEDTGARMSVSDET 652

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
              +A +         ++   I    EV  IYKG V  + ++GAFV F G + GL+H+S+
Sbjct: 653 LTILAKNQTVLERVQEKIDFIIGREIEVGGIYKGIVSSIKEYGAFVEFNGGQQGLLHVSE 712

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           LS E V+K SDV+  G  + +  +  D RG IKLS+K 
Sbjct: 713 LSHEPVSKISDVISVGQQLSLMCIGQDVRGNIKLSLKA 750


>gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
 gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
          Length = 983

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/706 (37%), Positives = 420/706 (59%), Gaps = 21/706 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E  GR +  ETG++AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+
Sbjct: 66  ESFREEFEIGGRSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRDFLPLTVD 125

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q+++NV+  D 
Sbjct: 126 YQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVLSSDG 185

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           +  P V++  A+SAALMLS +P+ GP+   +V  I+G ++LNP +DE     L+L  + +
Sbjct: 186 KQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFILNPTVDELGSSDLNLIYACS 245

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKD 236
           +D  LM++++A +++E  +   +   H+E    I+   +LAK   KE        I    
Sbjct: 246 RDKTLMIDVQAREITERDLQAGMKLAHSEAIKCIDPQIRLAKRAGKEKKEYKISLISDTS 305

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           + K+       I+E    S +   K+ R + ++ + + + +    E+   +   +    +
Sbjct: 306 YEKIRTFSEAPIEEVFTDSSY--GKFERGEALEKITQTVKAKLEEENDEDSLKFLHKAVD 363

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ +V+R  ++++ +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG 
Sbjct: 364 TVRKQVIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGA 423

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
             D Q +DS+ G     FM+HY+F P +  EV++ G  +RRE+GHG LA +A+  VLP  
Sbjct: 424 PGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPE 483

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
           + FPY +R+ SE+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV        D
Sbjct: 484 SDFPYAVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPATGD 543

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             ++ IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R 
Sbjct: 544 ISNYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARN 603

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL+ M + +S +R      +PR+  ++   D +R ++       + I ++TGA+V++ D
Sbjct: 604 QILDRMDQEISTARAINDGSSPRLATLSFSSDSLRKLL----FHRKKIEQETGARVSVSD 659

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
            GTV I + +   ++ A E +  +     EV + YKG V  + ++GAFV F G + GL+H
Sbjct: 660 -GTVTIVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLH 718

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           IS+LS E VAK SDVV  G ++ ++ +  D RG IKLS+K      
Sbjct: 719 ISELSHEPVAKVSDVVTVGQSLSLRCIGQDVRGNIKLSLKATLPQP 764


>gi|54025857|ref|YP_120099.1| polynucleotide phosphorylase/polyadenylase [Nocardia farcinica IFM
           10152]
 gi|81374135|sp|Q5YSV6|PNP_NOCFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|54017365|dbj|BAD58735.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Nocardia farcinica IFM 10152]
          Length = 764

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/729 (39%), Positives = 420/729 (57%), Gaps = 46/729 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   + T++L+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 30  YGTRTVRFETGRLARQAAGSVVAYLDDETMLLSATTAGKTPKDQFDFFPLTVDVEERMYA 89

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    VV
Sbjct: 90  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVLSLDPKDLYDVV 149

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---------NGQYVLNPRLDEDQGS-LDLFVS 179
           ++ AASA+  ++GLPF GPV G +V  I          GQ+V  P +++ +G+  D+ V+
Sbjct: 150 AINAASASTQIAGLPFSGPVGGVRVALIPDQGANSAGGGQWVAFPTVEQLEGAVFDMVVA 209

Query: 180 GT-----QDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLA 222
           G        A++MVE EA +             +E VV + +         +  A   LA
Sbjct: 210 GRVVESGDVAIMMVEAEATEKVIELVEGGAQAPTEAVVAEGLEAAKPFIARLCRAQQDLA 269

Query: 223 KMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           ++ AK              + E +    + +L  +  I  K  R ++ID++K  ++   +
Sbjct: 270 ELAAKPTEEFPLFPPYGPDVYEAVEGAAEAELGEALSIAGKQEREEKIDEIKLAVLDRLA 329

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            + +   E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+L
Sbjct: 330 EQFAG-REKELGAAFRSVTKKLVRQRILTDGFRIDGRGLADIRALSAEVAVVPRAHGSAL 388

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RREIG
Sbjct: 389 FERGETQILGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIG 448

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 449 HGALAERALIPVLPSQEDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVA 508

Query: 461 GIAMGLVKDG---------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           GIAMGLV D            ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 509 GIAMGLVSDTVTNDKGEQEVRYVALTDILGAEDAFGDMDFKVAGTREFVTALQLDTKLDG 568

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QA   R  IL+ M++ ++    ++  + PRV  + IP D+I  VIG  G
Sbjct: 569 IPSQVLAGALSQAHDARTTILDVMAEAIATP-DEMSPYAPRVTAIKIPVDKIGEVIGPKG 627

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           KVI  I E TGA ++I+DDGTV + ++     +AA + I +I    +P+V + + G VVK
Sbjct: 628 KVINQITEDTGANISIEDDGTVFVGATDGPSAQAAIDAINAIANPQLPKVGERFLGTVVK 687

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
              FGAFV     RDGLVHIS+L   +RVAK  DVV  GD + V++ D D+RGKI L   
Sbjct: 688 TTAFGAFVSLLPGRDGLVHISKLGNGKRVAKVEDVVNVGDKLRVEIADIDNRGKISL--V 745

Query: 689 VVDQNTGKP 697
            VD+N  +P
Sbjct: 746 PVDENADEP 754


>gi|260063685|ref|YP_003196765.1| polynucleotide phosphorylase/polyadenylase [Robiginitalea biformata
           HTCC2501]
 gi|88783130|gb|EAR14303.1| putative polyribonucleotide nucleotidyltransferase [Robiginitalea
           biformata HTCC2501]
          Length = 750

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/701 (38%), Positives = 425/701 (60%), Gaps = 18/701 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G  ++L TVV +    D  DF PLTV+Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVRSGNCMLLCTVVSNYKASD-LDFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           +A G+ PGG+ +RE+RP+  EIL+ R++DR +RPLF K Y  ETQV+I +M HD +  P 
Sbjct: 69  HASGRYPGGFFKREARPSTGEILVMRLVDRVLRPLFPKNYHCETQVMIQLMSHDDDVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            ++ +AASAA+ LS  PFE P+   +V  ++G++++NP   + + S +D+ V  ++D+V+
Sbjct: 129 AMAGLAASAAIQLSDFPFECPISEVRVGRVDGEFIINPTRTQLESSDIDMIVGASEDSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--EEM 244
           MVE E +++SE+ + +AI F H   K  I A ++LA    ++ +     +       +++
Sbjct: 189 MVEGEMDEISEEDMTEAIKFAHEAVKVQIAAQNRLADKAGRKEVREYEIEEENEAVEKKI 248

Query: 245 SQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             +  +     +     K  R     +LK+++++ FS E        I   +  ++ + V
Sbjct: 249 RDIAYDKAYAIAKAGSAKQERSAAFSELKEEVLAAFSEEEQEELGDLIKKYYYKVEKEAV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + LD+++R+DGR ++ +R I  +V  L  THGS++F RG+TQA+  VTLGT  +   +
Sbjct: 309 RNLTLDEQIRLDGRKTDEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANII 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S      F +HYNF P +TGE   +   SRREIGHG LA+RA+   +P     PYT+
Sbjct: 369 DMPSFEGEERFYLHYNFPPFSTGEARPIRGTSRREIGHGNLAQRALSRQVP--EDCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481
           R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ D +   + +LSDI G
Sbjct: 427 RVVSEVLESNGSSSMATVCAGTMALMDAGVKLRKPVSGIAMGLISDPESGKYAVLSDILG 486

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+KI G+S  I++ AL+QA+ GRLHIL++++  ++ 
Sbjct: 487 DEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILIKALKQARDGRLHILSKLTDTIAA 546

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
               +    P++    IP + I  VIG GG+VI+ + ++TG  + I++D     G V+I 
Sbjct: 547 PAEDVKPHAPKMVTRIIPNEYIGAVIGKGGEVIQELQKETGTTIVINEDPATGEGIVEIL 606

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLST 654
            +    I+     I SI   PE   +Y+ +V+K++DFGA V +      + L+H+S+L+ 
Sbjct: 607 GTDQGGIDKVLAKIDSIMFTPEEGSVYEVKVIKMLDFGAVVEYLDAPGNEILLHVSELAW 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           ER     DV+  GD   VK +  D R +  ++S + +    
Sbjct: 667 ERTENVEDVLSMGDVFDVKYMGIDPRTRKERVSRRALLPKP 707


>gi|317967932|ref|ZP_07969322.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CB0205]
          Length = 680

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/677 (41%), Positives = 402/677 (59%), Gaps = 18/677 (2%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +   G+T VL T       ++G DF PL  +Y+ER YA G+IPG ++RRESRP E   LI
Sbjct: 1   MVECGDTSVLVTATRS-GGREGIDFLPLICDYEERLYAAGRIPGSFMRRESRPPERATLI 59

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           +R+IDR +RPLF    +++ QV+   M  D    P V+++  AS A +L+ +PF GP+  
Sbjct: 60  ARLIDRPMRPLFPSWLRDDMQVVATCMSLDERVPPDVLAVTGASLATLLAKIPFNGPMAA 119

Query: 152 AQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
            +V  +   ++LNP   E ++  LDL V+GT   V+MVE  ANQL E  V++AI FG+  
Sbjct: 120 VRVGLLGDDFILNPSYREIERSELDLVVAGTPQGVIMVEAGANQLPEQDVIEAIDFGYEA 179

Query: 211 CKPVIEAISKLAKMCAKEPIVIDSKDFSK-----LEEEMSQMIKEDLRVSCFIPEKYVRC 265
              +I+    L K    E ++ +++         LE+E S+ I + L+   F   K  R 
Sbjct: 180 VCELIKVQQTLLKELGIEQVIPEAQTVDATLPTFLEKECSKGIGDVLKQ--FSLTKAERD 237

Query: 266 KQIDDLKKKMVSYFSSEHSSW--------NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
           +Q+D +K +     S              N   + + ++ +  K++R  +++   R+DGR
Sbjct: 238 EQLDAIKAQAAEKISGLKDDDAVKVAVSSNGKALGNNYKALTKKLMRAQIVNDGKRVDGR 297

Query: 318 DSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           + + VR ISA  G+L  R HGS LF RG TQ +   TLGT  D Q +D L+ +    ++ 
Sbjct: 298 NLDEVRPISAAAGVLPKRVHGSGLFQRGMTQVLSCATLGTPSDAQEMDDLNPSNEKTYLH 357

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           HYNF P + GE   M +P RREIGHG LA RA+ PVLP    FPY LR+VSE   S+GS+
Sbjct: 358 HYNFPPYSVGETRPMRSPGRREIGHGALAERALIPVLPSKESFPYVLRVVSECLSSNGST 417

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
           SM +VCGS+LALMDAGVP+  PV+G AMGL+K+G +  IL+DI G ED LG MDFKVAGT
Sbjct: 418 SMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGSEVRILTDIQGIEDFLGDMDFKVAGT 477

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           + GITA+QMDMKI G+    +  A+ QA+  RLHIL +M   + + R  L    PR+   
Sbjct: 478 EKGITALQMDMKITGLEVKTVAEAINQARPARLHILEKMLAAIDKPRDVLSPHAPRLLSF 537

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I P+ I  VIG GG+ I+GI E+T  K++I+D G V IAS   A  E A+ +I  +T  
Sbjct: 538 RIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQRIIEGLTRR 597

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               +++ G V +V+  GAFV     ++G++HISQLS  RV K  DVVK GD V V++ +
Sbjct: 598 VSEGEVFSGAVTRVIPIGAFVEILPGKEGMIHISQLSEARVEKVEDVVKVGDHVTVRVRE 657

Query: 677 FDDRGKIKLSMKVVDQN 693
            D+RG+I L+++ V Q 
Sbjct: 658 IDNRGRINLTLRGVPQQ 674



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVL--ATVVYDRSLKDGQDFFP-----LTVNYQER 66
           RP+    G + ++  G+ L   G T VL  AT+      ++  D  P        +Y   
Sbjct: 303 RPISAAAGVLPKRVHGSGLFQRGMTQVLSCATLGTPSDAQEMDDLNPSNEKTYLHHYNFP 362

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+      R    P   EI    + +R++ P+    + +    +V+   +  +  +
Sbjct: 363 PYSVGET-----RPMRSPGRREIGHGALAERALIPVLPSKESFPYVLRVVSECLSSNGST 417

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVS 179
           S  + S+  ++ ALM +G+P + PV GA +  I  G  V        +++  G +D  V+
Sbjct: 418 S--MGSVCGSTLALMDAGVPLKAPVSGAAMGLIKEGSEVRILTDIQGIEDFLGDMDFKVA 475

Query: 180 GTQDAVLMVELEANQLSEDV--VLDAIIFGHNE----CKPVIEAISK 220
           GT+  +  ++++      +V  V +AI           + ++ AI K
Sbjct: 476 GTEKGITALQMDMKITGLEVKTVAEAINQARPARLHILEKMLAAIDK 522


>gi|229818418|ref|ZP_04448699.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
           20098]
 gi|229784288|gb|EEP20402.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
           20098]
          Length = 893

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/713 (40%), Positives = 426/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + T++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPQDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  P  D+ +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPTWDQRERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L +  AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQNELKEKAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ + +  ++E    ++
Sbjct: 258 EFQLFPEYTDELYSRIDEIAHKDLDEALTIAEKLPRQDRIKEIKEGVKATLANEFEDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKEIGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +DSLSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQLDSLSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+    +P D+I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARTTILEVINECIDGP-SEMSEFAPRIITTTVPVDKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+++I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVYISSEGGEAAEKAKQIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV++EGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLQEGDTVEVVVQGVDDRGKISLAI 729


>gi|300858688|ref|YP_003783671.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686142|gb|ADK29064.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 767

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/728 (39%), Positives = 425/728 (58%), Gaps = 51/728 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++A+Q+DG+V     + T++LAT    +  ++G DFFPLTV+ +ER Y
Sbjct: 42  DFGTRTIRFETGQLAKQADGSVTTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERMY 101

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    V
Sbjct: 102 AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYDV 161

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ + +L +L V+G 
Sbjct: 162 VAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAGR 221

Query: 182 ------------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                         A++MVE  A +   + + D         +  G    KP IE    A
Sbjct: 222 LVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCRA 281

Query: 218 ISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD--- 270
            + LA+  AK+    P+     D   + + + + + + LR    I  K  R    ++   
Sbjct: 282 QAGLAEHAAKDAQEFPLFPPYSDV--IYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYME 339

Query: 271 -LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            ++ ++++ F SE  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V
Sbjct: 340 SIEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEV 399

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
            L+ R HGS+LF RG+TQ + V TL   + EQ +DSLS T    ++ HYNF P +TGE  
Sbjct: 400 ELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETG 459

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L 
Sbjct: 460 RVGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLY 519

Query: 450 DAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+
Sbjct: 520 NAGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQL 579

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D K+ GI   ++  AL QA   R  IL  M++V+     ++ ++ PR+  + +P  +I  
Sbjct: 580 DTKLDGIPSEVLASALAQAYEAREAILETMAEVIESP-DEMSKYAPRITTVTVPVSKIGE 638

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIY 623
           VIG  GK I  I E+TGA ++I++DGTV ++++S     AA E I +I    +P+V + +
Sbjct: 639 VIGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAGAAIEKINAIANPQLPKVGERF 698

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G +VK   FGAFV     RDGL+HIS+L   +R+ K  DVV  GD V V++LD D+RGK
Sbjct: 699 LGTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGK 758

Query: 683 IKL-SMKV 689
           I L S+K 
Sbjct: 759 ISLASVKE 766


>gi|254495070|ref|ZP_05107994.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
 gi|85819420|gb|EAQ40577.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
          Length = 746

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/699 (39%), Positives = 419/699 (59%), Gaps = 16/699 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + LETG++A+Q+ G+V+   G+ ++L TVV +   KD  DF PLTV+Y+E+ 
Sbjct: 10  IDLGDGRTISLETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-VDFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD +  P 
Sbjct: 69  AAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQMMSHDDDVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS LPFE P+   +V  +NG++++NP   +  +  +D+ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDLPFECPISEVRVGRVNGEFIINPTRAQLAEADIDMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEM 244
           MVE E ++ SE+ + +AI F H   K    A   LA+   K+         +   LE+++
Sbjct: 189 MVEGEMDECSEEEMAEAIKFAHEAIKVQCAAQVALAEAFGKKETREYTPETNDEDLEKKI 248

Query: 245 SQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             ++ +     +     K+ R     ++K+++ + FS E  +     I       Q   +
Sbjct: 249 HDLVYDKTYEIAKAGSAKHERSAAFSEIKEEVKNSFSEEEQAEYGNLISKYVAKAQKNAI 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + L + +R+DGR +  +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +   +
Sbjct: 309 RDLTLKEGLRLDGRKTTDIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQI 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT+
Sbjct: 369 DMPSYEGEETFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMIP--ADCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ DG +  +LSDI GDE
Sbjct: 427 RVVSEVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDGTNHAVLSDILGDE 486

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  +    
Sbjct: 487 DHLGDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILGKLTDTIETPN 546

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASS 598
             +    P++    IP D I   IG GGK I+ + ++T   + I +D     G ++I  +
Sbjct: 547 SDVKAHAPKMITRRIPNDLIGAFIGPGGKHIQELQKETETTIVITEDPVTEEGIIEILGT 606

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTER 656
             A ++A    I S+   PE   +Y+ +V+K++DFGA V +      + L+H+S+L+ ER
Sbjct: 607 KPAGMDAVITKIESMLFKPEKGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAWER 666

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
               +DVV  GD + VK    D R +  K+S K +    
Sbjct: 667 TDNVTDVVNLGDVLDVKYFGIDPRTRKEKVSRKALLPKP 705


>gi|15827380|ref|NP_301643.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
           TN]
 gi|221229857|ref|YP_002503273.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
           Br4923]
 gi|81537101|sp|Q9CCF8|PNP_MYCLE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782731|sp|B8ZQJ6|PNP_MYCLB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13092930|emb|CAC31235.1| putative polyribonucleotide phosphorylase / guanosine
           pentaphosphate synthetase [Mycobacterium leprae]
 gi|219932964|emb|CAR70949.1| putative polyribonucleotide phosphorylase / guanosine
           pentaphosphate synthetase [Mycobacterium leprae Br4923]
          Length = 773

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/733 (38%), Positives = 421/733 (57%), Gaps = 46/733 (6%)

Query: 6   TVEIE---WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTV 61
           TV I+   +  R ++ ETGR+A Q+ GAV+A    + ++L+     ++ K+  DFFPLTV
Sbjct: 14  TVTIDNGSFGTRAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTV 73

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           + +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D
Sbjct: 74  DVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVD 133

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
                 V+++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ +    D+ ++G
Sbjct: 134 PNDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVIAG 193

Query: 181 T----------QDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEAI 218
                        A++MVE EA +             +E +V   +         +  A 
Sbjct: 194 RIVGTDDEGKPDVAIMMVEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQ 253

Query: 219 SKLAKMC----AKEPIVIDS-KDF-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
            +LA +     AK P+   +  D+   +   ++ M  ++L  +  I  K  R ++ +++K
Sbjct: 254 QELADVVSSRQAKPPVEYPTFPDYGDDVYYSVASMATDELAAALTIGAKLERDQRTNEIK 313

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
            +++   +  +    E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++
Sbjct: 314 TQVLERLAGTYEG-REKELGAAFRSLTKKLVRQRILTNHFRIDGRGITDIRALSAEVAVV 372

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G
Sbjct: 373 PRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVG 432

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AG
Sbjct: 433 SPKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAG 492

Query: 453 VPISKPVAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
           VP+  PVAGIAMGLV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q
Sbjct: 493 VPLKAPVAGIAMGLVSDDVEFDGGTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQ 552

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           +D K+ GI   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +P D+I 
Sbjct: 553 LDTKLDGIPSQVLAGALAQAKDARLTILEVMAEAIDRP-DEMSPYAPRVITIKVPVDKIG 611

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKI 622
            VIG  GKVI  I E+TGA+++I+DDGTV + ++     +AA   I +I    +P V + 
Sbjct: 612 EVIGPKGKVINAITEETGAQISIEDDGTVFVGATDGLSAQAAINKINAIANPQLPTVGER 671

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G VVK+ +FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D + RG
Sbjct: 672 FLGTVVKITEFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIEKRG 731

Query: 682 KIKLSMKVVDQNT 694
           KI L +   D + 
Sbjct: 732 KISLVLVADDDSA 744


>gi|311064966|ref|YP_003971692.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           PRL2010]
 gi|310867286|gb|ADP36655.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
           bifidum PRL2010]
          Length = 887

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/713 (41%), Positives = 425/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  D + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L +  AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICEAQNELKEKAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287
                 +   +L   + ++  EDL  +  I EK  R  +I ++K+ +    ++E +  + 
Sbjct: 258 DFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMDD 317

Query: 288 ---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAGA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL+ +++ +     ++ E+ PR+    +P D+I  +IG  GK+I  I E 
Sbjct: 558 LQQAHEARTTILDLINECIDGP-AEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 729


>gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
 gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
          Length = 718

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/711 (40%), Positives = 429/711 (60%), Gaps = 18/711 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF++    I+   G  + LETG++ARQ+DGAV+   G+ ++LATV   ++ K+G DF PL
Sbjct: 1   MFNIVQQTIQMPDGSTITLETGKLARQADGAVVLRSGKLMMLATVCAAKTHKEGTDFLPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+YQE+  + GKIPG + RRE + ++NEILISR+IDR++RP+F + +  E QV++ +  
Sbjct: 61  SVDYQEKFASNGKIPGSFQRREGKLSDNEILISRLIDRALRPIFPEDFHAEVQVMVTLHS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D    P  ++ +AASAA+M S +PF GP+   +V  ING+YV+NP +       LDL V
Sbjct: 121 ADENIQPDALAALAASAAIMASDIPFNGPISEVRVAKINGEYVINPPVQAIGNADLDLIV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT D+++MVE E+N++SE  +++A+   H   K  + A  +               +  
Sbjct: 181 AGTSDSIIMVEGESNEVSEIEMVEALRAAHEVIKLQVAAQKEFEAKVG--STTKREYNHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFI------PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             + E+ + +  +L    +       P K+ R +    + +  ++    E       ++ 
Sbjct: 239 VHDAEIKEKMYSELFDKVYAVCLEGNPNKHYRSEAFAKILEDFIAAQPEELQDNPLYKV- 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             F DI     R ++L++  R+DGR    +R I+ +V  L   HGS+LF RG+TQ++   
Sbjct: 298 -YFGDITYDASRKMVLEEGKRLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTT 356

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DEQ VD       + F +HYNF   +TGEV       RREIGHG LA+R++  V
Sbjct: 357 TLGTKLDEQIVDLPMVKGYSKFYLHYNFPGFSTGEVRPNRGVGRREIGHGNLAQRSLERV 416

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P   + PYT+R+VS+I ES+GSSSMATVC   L+LMDAGVPI  PV+GIAMGL+ D   
Sbjct: 417 MPPEEENPYTIRVVSDILESNGSSSMATVCAGCLSLMDAGVPIKAPVSGIAMGLITDPST 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GI A QMD+KIGG+S +I+  AL QA+ GRLH
Sbjct: 477 GKWAVLSDILGDEDHLGDMDFKVTGTAQGIVACQMDIKIGGLSFDIIEKALNQAREGRLH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL +M++VL + +  L    PR   + I  + I  VIG GGKV++ I  ++GA VNI++ 
Sbjct: 537 ILGKMTEVLEKPKPDLKPHAPRAVTIVIDRELIGAVIGPGGKVVQEIQRESGATVNIEEK 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G V I +++   ++ AR+ I +I   PEV +IY   V  +  FGAF+ F   ++GL+
Sbjct: 597 DNKGYVSIFATNGESMDLARKRIDAIVKQPEVGEIYDATVKSIQPFGAFMEFLPGKEGLL 656

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           HIS++S ER+     V+KEGD + +KL + D + GK +LS KV+     K 
Sbjct: 657 HISEISWERLPSMDGVLKEGDQLQIKLTEVDKKTGKFRLSRKVLLPRPPKE 707


>gi|256832257|ref|YP_003160984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Jonesia denitrificans DSM 20603]
 gi|256685788|gb|ACV08681.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Jonesia denitrificans DSM 20603]
          Length = 735

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/719 (39%), Positives = 414/719 (57%), Gaps = 37/719 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+  A   G+T++L+T    +  KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLARQAAGSACAYLDGDTMLLSTTAVGKHPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+    + +  V+
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLIDRPLRPSFVKGLRNEVQVVITVLSIHPDEAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AAS +  LSGLP+ GPV G +V  I+ Q+V  P+  + +    D+ VSG       A
Sbjct: 138 AINAASMSTQLSGLPYSGPVGGVRVALIDDQWVAFPKHSDKERAVFDMVVSGRIVGDDVA 197

Query: 185 VLMVELEANQLSEDVV---------LDAIIFGHNECKPVI----EAISKLAKMCAKE--- 228
           ++MVE EA + S ++V            +  G    KP I    EA  +LA   AK    
Sbjct: 198 IMMVEAEATENSWNLVKNQGATAPTEGVVAEGLEAAKPFIRALCEAQIELAAKSAKPQME 257

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E +     +DLR +  I +K  R  + D++K   ++  + +    +
Sbjct: 258 FPLFLDYQD--DVYEAVKNAATDDLRTALTIADKQERENRQDEIKDATLASLAEQFEGRD 315

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             EI +    +   +VR  +L   VR+DGR    +R +SA+V ++ R HGS+LF RG+TQ
Sbjct: 316 -KEISAAIRSLTKSLVRQRVLTDGVRIDGRGLADIRTLSAEVEVVPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + + TL   + EQ +DSL    R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 IMGITTLNMLKMEQQIDSLGPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+
Sbjct: 435 ALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLI 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 495 SDTVDGETRYAALTDILGAEDAYGDMDFKVAGTRDFVTAIQLDTKLDGIPASVLAGALTQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  R  IL+ + + + +    +    PRV  + +P D+I  VIG  GK+I  I E TGA
Sbjct: 555 ARDARYTILDVIEEAIDQP-DDMSPHAPRVIAVQVPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGTV I ++     EAAR  I +I    VPEV + + G VVK   FGAFV    
Sbjct: 614 DITIEDDGTVYIGAADGTSAEAARAAINAIANPHVPEVGERFVGTVVKTTTFGAFVSLTP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +DGL+HISQ+       RV    DVV  G  + V++ + D RGK+ L   V D+   +
Sbjct: 674 GKDGLLHISQIRRLVGGRRVENVDDVVSVGQKLQVEIAEIDPRGKLSLHAVVDDEAAEQ 732


>gi|224283646|ref|ZP_03646968.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140799|ref|ZP_07802992.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
 gi|313133309|gb|EFR50926.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
          Length = 887

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/713 (41%), Positives = 425/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  D + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L +  AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICEAQNELKEKAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287
                 +   +L   + ++  EDL  +  I EK  R  +I ++K+ +    ++E +  + 
Sbjct: 258 DFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMDD 317

Query: 288 ---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKAIVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAGA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL+ +++ +     ++ E+ PR+    +P D+I  +IG  GK+I  I E 
Sbjct: 558 LQQAHEARTTILDLINECIDGP-AEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 729


>gi|302206397|gb|ADL10739.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330953|gb|ADL21147.1| Polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 767

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/728 (39%), Positives = 426/728 (58%), Gaps = 51/728 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++A+Q+DG+V     + T++LAT    +  ++G DFFPLTV+ +ER Y
Sbjct: 42  DFGTRTIRFETGQLAKQADGSVTTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERMY 101

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    V
Sbjct: 102 AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYDV 161

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ + +L +L V+G 
Sbjct: 162 VAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAGR 221

Query: 182 ------------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                         A++MVE  A +   + + D         +  G    KP IE    A
Sbjct: 222 LVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCRA 281

Query: 218 ISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD--- 270
            + LA+  AK+    P+     D   + + + + + + LR    I  K  R    ++   
Sbjct: 282 QAGLAEHAAKDAQEFPLFPPYSDV--IYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYME 339

Query: 271 -LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            ++ ++++ F SE  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V
Sbjct: 340 SIEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEV 399

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
            L+ R HGS+LF RG+TQ + V TL   + EQ +DSLS T    ++ HYNF P +TGE  
Sbjct: 400 ELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETG 459

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L 
Sbjct: 460 RVGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLY 519

Query: 450 DAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+
Sbjct: 520 NAGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQL 579

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D K+ GI   ++  AL QA   R  IL  M++V+     ++ ++ PR+  + +P  +I  
Sbjct: 580 DTKLDGIPSEVLASALAQAYEAREAILETMAEVIESP-DEMSKYAPRITTVTVPVSKIGE 638

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIY 623
           VIG  GK I  I E+TGA ++I++DGTV ++++S    EAA E I +I    +P+V + +
Sbjct: 639 VIGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAEAAIEKINAIANPQLPKVGERF 698

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G +VK   FGAFV     RDGL+HIS+L   +R+ K  DVV  GD V V++LD D+RGK
Sbjct: 699 LGTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGK 758

Query: 683 IKL-SMKV 689
           I L S+K 
Sbjct: 759 ISLASVKE 766


>gi|2342619|emb|CAB11392.1| guanosine pentaphosphate synthetase/ polyribonucleotide
           nucleotidyltransferase [Mycobacterium leprae]
          Length = 777

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/733 (38%), Positives = 421/733 (57%), Gaps = 46/733 (6%)

Query: 6   TVEIE---WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTV 61
           TV I+   +  R ++ ETGR+A Q+ GAV+A    + ++L+     ++ K+  DFFPLTV
Sbjct: 18  TVTIDNGSFGTRAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTV 77

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           + +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D
Sbjct: 78  DVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVD 137

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSG 180
                 V+++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ +    D+ ++G
Sbjct: 138 PNDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVIAG 197

Query: 181 T----------QDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEAI 218
                        A++MVE EA +             +E +V   +         +  A 
Sbjct: 198 RIVGTDDEGKPDVAIMMVEAEATENVIELVECGAQAPTESIVAQGLEVAKPFIAALCTAQ 257

Query: 219 SKLAKMC----AKEPIVIDS-KDF-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
            +LA +     AK P+   +  D+   +   ++ M  ++L  +  I  K  R ++ +++K
Sbjct: 258 QELADVVSSRQAKPPVEYPTFPDYGDDVYYSVASMATDELAAALTIGAKLERDQRTNEIK 317

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
            +++   +  +    E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++
Sbjct: 318 TQVLERLAGTYEG-REKELGAAFRSLTKKLVRQRILTNHFRIDGRGITDIRALSAEVAVV 376

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G
Sbjct: 377 PRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVG 436

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AG
Sbjct: 437 SPKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAG 496

Query: 453 VPISKPVAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
           VP+  PVAGIAMGLV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q
Sbjct: 497 VPLKAPVAGIAMGLVSDDVEFDGGTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQ 556

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           +D K+ GI   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +P D+I 
Sbjct: 557 LDTKLDGIPSQVLAGALAQAKDARLTILEVMAEAIDRP-DEMSPYAPRVITIKVPVDKIG 615

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKI 622
            VIG  GKVI  I E+TGA+++I+DDGTV + ++     +AA   I +I    +P V + 
Sbjct: 616 EVIGPKGKVINAITEETGAQISIEDDGTVFVGATDGLSAQAAINKINAIANPQLPTVGER 675

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G VVK+ +FGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D + RG
Sbjct: 676 FLGTVVKITEFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIEKRG 735

Query: 682 KIKLSMKVVDQNT 694
           KI L +   D + 
Sbjct: 736 KISLVLVADDDSA 748


>gi|229820964|ref|YP_002882490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
 gi|259534112|sp|C5BWR2|PNP_BEUC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229566877|gb|ACQ80728.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 744

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/720 (39%), Positives = 419/720 (58%), Gaps = 39/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAVLAT   +TVVL+T    +  K+  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAAGAVLATLDEDTVVLSTTAAGKHPKEQFDFFPLTVDVEERQYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF K  +NE QV+  ++    + S  V+
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVETILAIHPDDSYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AASA+  +SGLPF GPV G +V  I+G +V  PR  E +    D+ V+G       A
Sbjct: 138 AINAASASTQISGLPFSGPVGGVRVALIDGTWVGFPRYSEKERAVFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           + MVE EA   + +++          + +  G    KP I A+ +          K    
Sbjct: 198 ITMVEAEATDNAWELIKGEGAGAPTEEVVAEGLEAAKPFIRALCEAQAALASRAAKEVQV 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+  + +  +   + + Q + + L  +  I +K  R  ++D++K   V    +      
Sbjct: 258 FPVFPEYEPDAY--DAVEQQVADHLDAALRIADKQERESRLDEIKDAAVGALQAGFDG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ + +  +  K +R  +L    R+DGR  + +R ++A+V +L R HGS+LF RG+TQ
Sbjct: 315 EKELSAAYRALTKKFIRRHILTDSFRIDGRGLKDIRPLTAEVEVLPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   + EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 ILGVTTLNMLKMEQQLDTLSPVSRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+  PVAGIAMGLV
Sbjct: 435 ALVPVLPARDEFPYAIRQVSEALSSNGSTSMGSVCASTLSMLNAGVPLRAPVAGIAMGLV 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 495 SDEVDGETRYATLTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGALSQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ +     ++    PRV  + +P D+I  VIG  GK+I  I + TGA
Sbjct: 555 AREARLHILDVMAEAIDTP-DEMAATAPRVITVQVPVDKIGEVIGPKGKMINQIQDDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I ++     EAAR+ I +I    +PEV + + G VVK   FGAFV    
Sbjct: 614 DISIEDDGTVFIGATDGPSAEAARQAINAIANPHMPEVGERFVGTVVKTTSFGAFVSLTP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK  LS+  V + T   
Sbjct: 674 GKDGLLHISQIRRLVGGKRVENVEDVLGVGQKVQVEIAEIDPRGK--LSLHAVVEETPAD 731


>gi|310288093|ref|YP_003939352.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           S17]
 gi|309252030|gb|ADO53778.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           S17]
          Length = 887

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/713 (41%), Positives = 425/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  D + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L +  AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKVICEAQNELKEKAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287
                 +   +L   + ++  EDL  +  I EK  R  +I ++K+ +    ++E +  + 
Sbjct: 258 DFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMDD 317

Query: 288 ---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAGA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL+ +++ +     ++ E+ PR+    +P D+I  +IG  GK+I  I E 
Sbjct: 558 LQQAHEARTTILDLINECIDGP-AEMSEYAPRIITTTVPVDKIGEIIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|332291156|ref|YP_004429765.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169242|gb|AEE18497.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 741

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/707 (39%), Positives = 436/707 (61%), Gaps = 18/707 (2%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            V+   I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD  DF PLTV
Sbjct: 4   KVYKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEAKD-LDFLPLTV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD
Sbjct: 63  DYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHD 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +  P  ++ +AASAA+ LS  PFE  +  A+V  +NG++++NP   + ++  +D+ +  
Sbjct: 123 DDVMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDIDMMIGA 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFS 238
           + D+V+MVE E +++SE+ + DAI F H+  K    A  +LA+   K+ +      +  +
Sbjct: 183 SADSVMMVEGEMDEISEEEMADAIKFAHDHIKVQCAAQLRLAEAFGKKEVREYPAERKDA 242

Query: 239 KLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            L++++  M  + +   +     K+ R     ++K+++ + FS E        +   +  
Sbjct: 243 DLKQKVHDMAYDKVYAIAQAGSAKHERSAAFKEIKEEIKASFSEEELEDFGDLVSKYYRA 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            +   +R + L++ +R+DGR +  +R I ++V  L   HGS++F RG+TQA+  VTLGT 
Sbjct: 303 AEKAAIRDLTLNEGLRLDGRKTTEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTS 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   +D  S     +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P  A
Sbjct: 363 RDANKIDMPSHEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIP--A 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG--DDFII 475
             PYT+R+VSE+ ES+GSSSMATVC  ++A+MDAG+ ++KPV+GIAMGL+ DG    + +
Sbjct: 421 DCPYTVRVVSEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDGASGKYAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+V ALQQA+ GRLHIL+++
Sbjct: 481 LSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALQQARAGRLHILDKI 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD----- 590
           ++ ++  R  + E+ P++  + IP + I  +IG GGKVI+ + ++TG  + I++D     
Sbjct: 541 TETIAAPREDVKEYAPKMVGVRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEE 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVH 648
           G V+I  +    I A    I SIT  P V   YK +V+K++DFGA V +      + L+H
Sbjct: 601 GIVEILGTGQEGINAVLAKIDSITFKPVVGNTYKVKVIKMLDFGAVVEYLDAPGNEVLLH 660

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           +S+L+ ER    SDVV  GD + VK    D R +  K+S K +    
Sbjct: 661 VSELAWERTENASDVVSMGDELDVKYFGIDKRTRKEKVSRKALLDKP 707


>gi|308276640|gb|ADO26539.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
           pseudotuberculosis I19]
          Length = 767

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/728 (39%), Positives = 425/728 (58%), Gaps = 51/728 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++A+Q+DG+V     + T++LAT    +  ++G DFFPLTV+ +ER Y
Sbjct: 42  DFGTRTIRFETGQLAKQADGSVTTYLDDGTMLLATTTASKQPREGFDFFPLTVDVEERMY 101

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    V
Sbjct: 102 AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDYYDV 161

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ + +L +L V+G 
Sbjct: 162 VAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVVAGR 221

Query: 182 ------------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                         A++MVE  A +   + + D         +  G    KP IE    A
Sbjct: 222 LVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCRA 281

Query: 218 ISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD--- 270
            + LA+  AK+    P+     D   + + + + + + LR    I  K  R    ++   
Sbjct: 282 QAGLAEHAAKDAQEFPLFPPYSDV--IYDAVEKKVSKKLRQLLTIKSKQDRDDATNEYME 339

Query: 271 -LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            ++ ++++ F SE  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V
Sbjct: 340 SIEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEV 399

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
            L+ R HGS+LF RG+TQ + V TL   + EQ +DSLS T    ++ HYNF P +TGE  
Sbjct: 400 ELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETG 459

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L 
Sbjct: 460 RVGSPKRREIGHGALAERALIPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLY 519

Query: 450 DAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+
Sbjct: 520 NAGVPLKAPVAGIAMGLVSDEIDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQL 579

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D K+ GI   ++  AL QA   R  IL  M++V+     ++ ++ PR   + +P  +I  
Sbjct: 580 DTKLDGIPSEVLASALAQAYEAREAILETMAEVIESP-DEMSKYAPRTTTVTVPVSKIGE 638

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIY 623
           VIG  GK I  I E+TGA ++I++DGTV ++++S    EAA E I +I    +P+V + +
Sbjct: 639 VIGPKGKTINSITEETGANISIEEDGTVFVSATSGDAAEAAIEKINAIANPQLPKVGERF 698

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G +VK   FGAFV     RDGL+HIS+L   +R+ K  DVV  GD V V++LD D+RGK
Sbjct: 699 LGTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIDKVEDVVNVGDKVEVEILDIDNRGK 758

Query: 683 IKL-SMKV 689
           I L S+K 
Sbjct: 759 ISLASVKE 766


>gi|187610336|sp|A0PQE7|PNP_MYCUA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 762

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/717 (39%), Positives = 413/717 (57%), Gaps = 46/717 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+V+    +  ++L+     ++ K+  +FFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      VV
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT------- 181
           ++ AASA+  L+GLPF GPV G +V  I+GQ+V  P +++ +    D+ V+G        
Sbjct: 142 AINAASASTQLAGLPFSGPVGGVRVALIDGQWVAFPNVEQLERAVFDMVVAGRIVGTEED 201

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEA----ISKLAKMCA 226
                A++MVE EA     ++V           +  G    KP I A      +LA    
Sbjct: 202 GTPDVAIMMVEAEATDKVIELVEGGAPAPTESVVAQGLEAAKPFIAALCTAQQELADASG 261

Query: 227 -------KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
                  + P+  +  D   +   +S +  + L  +  I  K  R ++ +++K +++   
Sbjct: 262 ATVKTGAEYPVFPEYGD--DVYYAVSSVATDGLAAALTIGGKAERNQRTEEIKAEVLERL 319

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +  +    E EI + F  +  K+VR  ++    R+DGR    +R +SA+V L+ R HGS+
Sbjct: 320 ADTYEG-REKEIGAAFRSLTKKLVRQRIVTDHFRIDGRGVTDIRALSAEVALVPRAHGSA 378

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 379 LFERGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREI 438

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PV
Sbjct: 439 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPV 498

Query: 460 AGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           AGIAMGLV D  +        F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 499 AGIAMGLVSDDVEVDGKTERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 558

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  G
Sbjct: 559 IPSQVLAGALAQAKDARLTILEVMAEAIDTP-DEMSPYAPRVTTIKVPVDKIGEVIGPKG 617

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           KVI  I E+T A+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK
Sbjct: 618 KVINSITEETRAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVK 677

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 678 TTDFGAFVALLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 734


>gi|119025278|ref|YP_909123.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154486675|ref|ZP_02028082.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
           L2-32]
 gi|187470939|sp|A1A008|PNP_BIFAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118764862|dbj|BAF39041.1| polynucleotide nucleotidyl transferase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084538|gb|EDN83583.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
           L2-32]
          Length = 892

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/724 (40%), Positives = 427/724 (58%), Gaps = 38/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  VV
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HS 284
                 +    L   + ++   DL  +  I EK  R  +I ++K+ + +  + E      
Sbjct: 258 EFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDMED 317

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  + EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILASA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++  + PR+    +P D+I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARTTILEVINECIDGP-AEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+E+I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVYISSEGGEAAEKAKEIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFEDQE 736

Query: 694 TGKP 697
           +  P
Sbjct: 737 SSAP 740


>gi|311744161|ref|ZP_07717966.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
           DSM 15272]
 gi|311312516|gb|EFQ82428.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
           DSM 15272]
          Length = 753

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/735 (39%), Positives = 434/735 (59%), Gaps = 48/735 (6%)

Query: 5   HTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFP 58
           HTVE       +  R ++ ETG +A+Q+ G+V A   + T++L+     R  K+  DFFP
Sbjct: 18  HTVETVIDNGRFGTRTVRFETGVLAQQAAGSVSAYLDDDTMLLSATTAGRHPKEFLDFFP 77

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LT++ +ER YA G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+INVM
Sbjct: 78  LTIDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFKKGLRNEVQVVINVM 137

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLF 177
             + ++   V+++ AASA+  +SGLPF GPV   +V  I+GQ+V  P   + ++   D+ 
Sbjct: 138 ALNPDTPYDVLAINAASASTQISGLPFTGPVGATRVALIDGQWVAFPSHSQLEEAVFDMV 197

Query: 178 VSG---------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIE 216
           V+G         +  A++MVE E+ +             +E+VV   +       + + E
Sbjct: 198 VAGRIAAQADGSSDVAIMMVEAESTEATWDLVQSGVQAPTEEVVAGGLEAAKVAIRQMCE 257

Query: 217 AISKLA----KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           A S+LA    K     PI +D +D +   + ++++   DL  +  I  K  R ++  ++K
Sbjct: 258 AQSELAAAAAKPVKDFPIFLDYEDDAF--DAVAEVASGDLAQALTILHKADREERESEIK 315

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
             +V           E E+ +    +   +VR  +L  KVR+DGR    +R++SA+V ++
Sbjct: 316 ANVVEQLGERFEG-REKELGAALRSLTKSLVRDRVLRDKVRIDGRGLADIRELSAEVSVI 374

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + V TL   + EQ +D+LS   +  +M +YNF P +TGE  R+G
Sbjct: 375 PRVHGSALFQRGETQILGVTTLNMLDLEQKLDTLSPETKRRYMHNYNFPPFSTGETGRVG 434

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L L++AG
Sbjct: 435 SPKRREIGHGALAGRALLPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLGLLNAG 494

Query: 453 VPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           VP+  PVAGIAMGL+    D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K
Sbjct: 495 VPLRAPVAGIAMGLISGEVDGRTEYVTLTDILGAEDAFGDMDFKVAGTPEFITALQLDTK 554

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + GI  +++  AL QAK  RL IL+ M++ + E   ++  + PR+  + IP D+I  VIG
Sbjct: 555 LDGIPADVLAGALNQAKGARLTILDVMAQAIDEP-DEMSPYAPRIITIKIPVDKIGEVIG 613

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQ 626
             GKVI  + + TGAK++IDDDGTV + + +    EAAR  I +I    +PEV + Y G 
Sbjct: 614 PKGKVINQLQDDTGAKISIDDDGTVYVGADNGDAAEAARAAINAIANPTMPEVGERYLGT 673

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           VVKV+DFGAF+     +DGL+HIS+L      +RV    DVV  G  + V++ +  DRGK
Sbjct: 674 VVKVVDFGAFISLSPGKDGLLHISKLRDLNGGQRVNNVEDVVSVGQKIQVEIAELGDRGK 733

Query: 683 IKLSMKVVDQNTGKP 697
           I L    V +++ +P
Sbjct: 734 ISL--VPVSESSEEP 746


>gi|227503420|ref|ZP_03933469.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           accolens ATCC 49725]
 gi|227075923|gb|EEI13886.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           accolens ATCC 49725]
          Length = 748

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/719 (40%), Positives = 415/719 (57%), Gaps = 46/719 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DG+V     + T++LAT       ++  DFFPLTV+ +ER Y
Sbjct: 28  DFGTRTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERMY 87

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    V
Sbjct: 88  AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYYDV 147

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 148 VAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAGR 207

Query: 182 --------QDAVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKL 221
                     A++MVE  A     + + D        A+  G    KP I    EA + L
Sbjct: 208 IVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNGL 267

Query: 222 AKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD----LKK 273
           A+  AKE    P+    +D   +   + +   + L     IP K  R +  ++    +++
Sbjct: 268 AERTAKETQEFPLFPAYED--DVFAAVEKAASKKLESLLTIPGKQERDEATNEHMEQVEQ 325

Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
            ++  F+    +    +I + + ++  K+VR  +L    R+DGR    +RD+S +V L+ 
Sbjct: 326 DLLPQFADLEEAVASKQIRAAYNEVMKKIVRRKILTDGFRIDGRGLTDIRDLSVEVDLVP 385

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393
           R HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+
Sbjct: 386 RAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIESKRYMHHYNFPPFSTGETGRVGS 445

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
           P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGV
Sbjct: 446 PKRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGV 505

Query: 454 PISKPVAGIAMGL----VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           P+  PVAGIAMGL    VK  + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+
Sbjct: 506 PLKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAFGDMDFKVAGTSEFITALQLDTKL 565

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI   ++  AL+QA+  R  IL  M++V+     ++    P++  + IP ++I  +IG 
Sbjct: 566 DGIPSKVLAQALEQARDARATILETMAEVIDSP-DEMSGLAPKITSVKIPVNKIGELIGP 624

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQV 627
            GK I  I E TGA V+I+DDGTV I++ +    +AA E + SI    +P+V + + G V
Sbjct: 625 KGKTINQITEDTGADVSIEDDGTVYISAVTGEAADAAIEKVNSIANPQLPKVGERFLGTV 684

Query: 628 VKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           VK + FGAFV     RDGL+HIS L   ER+ K  DVV  GD V V++ D D+RGKI L
Sbjct: 685 VKTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVVNVGDKVQVEIADIDNRGKISL 743


>gi|183601888|ref|ZP_02963257.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682802|ref|YP_002469185.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190378|ref|YP_002967772.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195784|ref|YP_002969339.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|254782707|sp|B8DVV8|PNP_BIFA0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183218773|gb|EDT89415.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620452|gb|ACL28609.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248770|gb|ACS45710.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250338|gb|ACS47277.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178101|gb|ADC85347.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793365|gb|ADG32900.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 873

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/713 (40%), Positives = 422/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+DGAV A   + ++VL+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGRRTVRFETGRLARQADGAVAAYLDDDSMVLSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + E S  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPEDSYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ ++SGLPF GPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTLISGLPFTGPVGGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVESGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + +A ++L ++ AKE  
Sbjct: 198 AIAMIEAGAGKNAWNLIYDEGQQKPDEEVVAGGLEAAKPFIKVLCDAQNELKRLAAKETR 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +    L   + ++   DL  +  I EK  R ++I ++K+++    S E +  +E
Sbjct: 258 EFTLFPEYTDDLYNRIDEIAHADLDEALSIAEKLPRQERIAEIKQRVKDTLSVEFTDMDE 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                EI + F+++Q ++VR  +L +  R+DGR    +R +SA++ ++ R HGS+LF RG
Sbjct: 318 MEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEIDVVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + + TL   + EQ +D+LSG     +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGITTLNMLKMEQQIDALSGPTTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++  A
Sbjct: 498 GLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTADFITALQLDTKLDGIPADVLAGA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L+QA   R  IL  +++ +     ++  F PR+    +P D+I  VIG  GK+I  I E 
Sbjct: 558 LKQAHEARKTILEVINECIDGP-AEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+++I  I    VP+  + YKG VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVYISSEGGEAAEKAKQIIDEIANPHVPQAGETYKGTVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      +R+    DV+KEGD+V V +   DDRGKI L++
Sbjct: 677 LTPGIDGLLHISQIRNLADGQRIDAVEDVLKEGDSVEVVVQGVDDRGKISLAI 729


>gi|29829065|ref|NP_823699.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           avermitilis MA-4680]
 gi|81720032|sp|Q82K80|PNP_STRAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29606171|dbj|BAC70234.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 738

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/708 (39%), Positives = 413/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKENLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRALEDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAK--------MCAK 227
           A++MVE EA + +  +V         + +  G +  KP I+ + K              +
Sbjct: 197 AIMMVEAEATEKTIQLVAGGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E ++  +K +L  +  I  K  R  ++D +K+        +     
Sbjct: 257 FPVFLDYQD--DVLEALTAAVKSELSQALTIAGKQDREAELDRVKEIAAEKLLPQFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              +     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I +   ++ EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAQVGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
           melanesiensis BI429]
 gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
           melanesiensis BI429]
          Length = 699

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/695 (39%), Positives = 434/695 (62%), Gaps = 11/695 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M        E+ GR L ++ G++A+QS GA    +G++VVLAT      + +G DF PLT
Sbjct: 1   MLKFREWSKEFFGRKLTIQYGKVAKQSSGAAWVQFGDSVVLATANISDRVIEGVDFVPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V YQE+ YA GKIPGG+++RE +PTE+ IL +R+IDR IRPLF K  +N+ Q+I+ V+  
Sbjct: 61  VEYQEKFYAAGKIPGGFIKREGKPTESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           D ++ P V  + AAS AL  S +PF+G V G ++ Y++G++V+ P  ++ + S LD+ V+
Sbjct: 121 DGDTPPDVTGIFAASLALNFSKIPFQGIVAGVRIGYVDGEFVIFPTEEQLKNSKLDIVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-S 238
           G++DA+ MVE EA +++E+ ++ A++  H   K +IE   ++ +    E + I+      
Sbjct: 181 GSKDAITMVEGEAKEVTEEEMVQALMVAHEAIKKLIEFEEEILREFNVEKMEIEEPKPKD 240

Query: 239 KLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN------EGEI 291
           +L     ++ ++ +LR    I EK  R  ++ + K++++S    E    +      E  +
Sbjct: 241 ELIGRFEELLVENELRKRLLIKEKLERSLKLKEYKEELISKIFEEFEIDDEEKLTQEMLL 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +F++   K++R +++++ +R DGR  E +R I+ +VG+L RTHGS+LF RG+TQ++ +
Sbjct: 301 KELFDEKAKKLMRKIIINEGIRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGI 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           VTLG   +EQ VD++       F++HYNF P + GEV  +  P RREIGHG LA RA+  
Sbjct: 361 VTLGAPMEEQIVDTIMEEGTKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKA 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V P    FPY +R+VSEI ES+GSSSMATVC  SLALMDAGVPI   VAG+AMGL+ D +
Sbjct: 421 VAPDEEDFPYVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVDEE 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           + ++L+DI G EDH G MDFKVAGT +GITA QMD KI G+ E ++  AL+QA+  R+ I
Sbjct: 481 NEVVLTDIQGLEDHWGDMDFKVAGTRNGITAFQMDCKIAGVGEELLKKALKQARVARMRI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-D 590
           L+ M + + E R  L  + P +  + I P ++  +IG GGKVI+ IV++   +++IDD  
Sbjct: 541 LDIMFETIKEPRKSLSPYAPLIANIEIDPMKVGELIGPGGKVIKSIVKEFDVEISIDDVT 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V +      ++  A E I+++T   EV  +++G++ ++  +G FV     + GL H S
Sbjct: 601 GKVSVYGKDQNKVNQAIEYIKTLTREIEVGDMFEGKITRIEPYGLFVELMPGKIGLAHSS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +L  +   +     K GD + V +++ DD G+I+L
Sbjct: 661 KLGND-SKEFRKKYKVGDVIKVVVVNIDDSGRIQL 694


>gi|306823630|ref|ZP_07457005.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           ATCC 27679]
 gi|304553337|gb|EFM41249.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           ATCC 27679]
          Length = 880

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/724 (41%), Positives = 430/724 (59%), Gaps = 38/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +    L   + ++   DL  +  I EK  R  +I ++K+ + +  + E +  ++
Sbjct: 258 EFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILASA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++  F PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAKEARTTILEVINECIDGP-AEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+E+I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFEDQE 736

Query: 694 TGKP 697
           +  P
Sbjct: 737 SSAP 740


>gi|283455304|ref|YP_003359868.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           Bd1]
 gi|283101938|gb|ADB09044.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
           dentium Bd1]
          Length = 880

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/724 (41%), Positives = 430/724 (59%), Gaps = 38/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +    L   + ++   DL  +  I EK  R  +I ++K+ + +  + E +  ++
Sbjct: 258 EFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILASA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++  F PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAKEARTTILEVINECIDGP-AEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+E+I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFEDQE 736

Query: 694 TGKP 697
           +  P
Sbjct: 737 SSAP 740


>gi|163839428|ref|YP_001623833.1| polynucleotide phosphorylase/polyadenylase [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952904|gb|ABY22419.1| polyribonucleotide nucleotidyltransferase [Renibacterium
           salmoninarum ATCC 33209]
          Length = 778

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/709 (40%), Positives = 417/709 (58%), Gaps = 37/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    + T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 50  FGKRTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 109

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 110 AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 169

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ A+S +  LSGLPF GP+ G +V  I  Q+V  PR  E +    ++ V+G       A
Sbjct: 170 AINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFNMVVAGRVAGDDVA 229

Query: 185 VLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           ++MVE EA   S +++          + +  G    KP I+A+ +          K   +
Sbjct: 230 IMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCEAQADLAARAAKPTVE 289

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++      L     I +K  R    D LK ++VS  SS+     
Sbjct: 290 FPIFLDYQD--DIFEAVNAAAAAKLTEVFQIADKQERDNASDALKDEVVSSLSSKFDG-R 346

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + F  +  +VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F RG+TQ
Sbjct: 347 EKEISAAFRSVTKQVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQ 406

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 407 IMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 466

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV
Sbjct: 467 ALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLV 526

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 527 SDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAAALKQ 586

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 587 AREARLHILGVLNAAIDVP-DELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQEDTGA 645

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I +++    +AAR  I +I    +PE+ + Y G VVK   FGAFV    
Sbjct: 646 DISIEDDGTVYIGATNGPSADAARSAINAIANPQIPEIGERYLGTVVKTTTFGAFVSLTP 705

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            +DGL+H+++L      +RV    DVV  G  + V++   DDRGK+ LS
Sbjct: 706 GKDGLLHVTELRKINDGKRVDNVDDVVSVGQKIQVEITKIDDRGKLSLS 754


>gi|309802878|ref|ZP_07696979.1| guanosine pentaphosphate ligase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308220345|gb|EFO76656.1| guanosine pentaphosphate ligase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 763

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/724 (41%), Positives = 430/724 (59%), Gaps = 38/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +    L   + ++   DL  +  I EK  R  +I ++K+ + +  + E +  ++
Sbjct: 258 EFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILASA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++  F PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAKEARTTILEVINECIDGP-AEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+E+I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFEDQE 736

Query: 694 TGKP 697
           +  P
Sbjct: 737 SSAP 740


>gi|311898696|dbj|BAJ31104.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Kitasatospora setae KM-6054]
          Length = 736

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/708 (39%), Positives = 412/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     +  K+  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKQPKEHFDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV++ VM  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVVTVMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E + +  D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELESAVFDMVVAGRALPDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAK--------MCAK 227
           A++MVE EA   +  +V         + +  G    KP I+ +                +
Sbjct: 197 AIMMVEAEATTKTIQLVEGGAEAPTEEVVAAGLEAAKPFIKVLCAAQAQLAKQAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P  ++ +D   +   ++  +K++L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPRFLEYQD--DVLAALTSAVKDELAKALTIAGKQERQNELDRIKGVAADKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYNALTKKIVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPETRRRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 AILPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFITALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 AKDARLHILDVMNEAIDAP-DEMSPNAPRIITIKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARSTINQIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLAVGAKVQVEIAEIDPRGKLSL 720


>gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 992

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/706 (38%), Positives = 420/706 (59%), Gaps = 14/706 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E   R +  ETG+IAR ++G+V+    +T VL+TV   ++     DF PLTV+
Sbjct: 51  ESFKEEFEVGSRVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKTDSPR-DFLPLTVD 109

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q++ +V+  D 
Sbjct: 110 YQEKQYAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMASVLSSDG 169

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           +  P +++  A+SAALMLS +P+ GP+   ++  I GQ+V+NP +DE   S L+L  + T
Sbjct: 170 KQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACT 229

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +D  +M+++++ ++SE  +  A+   H E    ++   +LA+   K+         S+  
Sbjct: 230 RDKTMMIDVQSREISEKDLAAALRLAHPEAIKYLDPQIRLAEKAGKQKKEYKLSMLSEKT 289

Query: 242 -EEMSQMIKEDLRVSCFIP--EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            E+++ +    +      P   K+ R + +D++ K +   F  E    +   +    + +
Sbjct: 290 LEKVTDLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTV 349

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + KVVR+ M+    R+DGR  + VR I  +   L   HGS+LF RGDTQ +  VTLG   
Sbjct: 350 RKKVVRSRMISDGFRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPG 409

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +DSL G  +  FM+HY+F P  T EV + G  +RRE+GHG LA +A+  VLP    
Sbjct: 410 EAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEA 469

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------- 471
           FPYT+RI SE+  SDGS+SMA+VCG S+ALMDAG+P+   VAG+++GL+ D D       
Sbjct: 470 FPYTVRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIK 529

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+ I++DI G EDHLG MDFK+AGT +G+TA+Q+D+K  GI  +I+  +L+ A+  RL I
Sbjct: 530 DYRIVTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIVCESLENAREARLQI 589

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M + ++  R Q G ++PR+       D +R++IG  G + R I E+TGA+++I D+G
Sbjct: 590 LDHMERNINSPRAQDGAYSPRLATFKYTNDSLRSLIGPMGVLKRKIEEETGARLSI-DNG 648

Query: 592 TVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           T+ I + +   +E A+E +  I      V  +YKG V  + ++GAFV F G + GL+H+S
Sbjct: 649 TLTIVAKNQDVMEKAQEKVDFIIGREIVVGGVYKGTVTSIKEYGAFVEFSGGQQGLLHMS 708

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +LS E V+K SDV+  G  +    ++ D RG IKLS K +     +
Sbjct: 709 ELSHEPVSKVSDVLHIGQYITTMCIETDVRGNIKLSRKAMLPKPER 754


>gi|120434746|ref|YP_860433.1| polynucleotide phosphorylase/polyadenylase [Gramella forsetii
           KT0803]
 gi|187610271|sp|A0LYC0|PNP_GRAFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117576896|emb|CAL65365.1| polyribonucleotide nucleotidyltransferase [Gramella forsetii
           KT0803]
          Length = 750

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/710 (39%), Positives = 432/710 (60%), Gaps = 19/710 (2%)

Query: 1   MFDVHTVE-IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      E I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD   F P
Sbjct: 1   MIPKTFKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-LPFLP 59

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M
Sbjct: 60  LTVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMIQLM 119

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLF 177
            HD E  P  ++ +AASAA+ LS  PFE  +  A+V  +NG++++NP   +  +  +++ 
Sbjct: 120 SHDDEVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMM 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSK 235
           +  + D+V+MVE E +++SE+ +++AI F H   K  IEA  +LA    ++ +    D+ 
Sbjct: 180 IGASADSVMMVEGEMDEISEEDMVEAIKFAHEAIKVQIEAQHRLADAFGRKEVREYEDAP 239

Query: 236 DFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           +   L +++  M  + +   +     K  R      +K+++ + FS E        +   
Sbjct: 240 ENEDLVKKVHDMAYDKVYAVAKAGSSKKERTDAFASIKEEVKASFSEEELEEYGDLVSDY 299

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +   +   VR + L++ +R+DGR ++ VRDI  +V  L   HGSS+F RG+TQA+  VTL
Sbjct: 300 YRKAEKAAVRDLTLNEGIRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTL 359

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D   +D  S      F +HYNF P  TGE   +   SRRE+GHG LA+RA+  ++P
Sbjct: 360 GTSRDANQIDMPSHEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMIP 419

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--D 472
              + PYT+R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ DGD   
Sbjct: 420 --EECPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSGK 477

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL
Sbjct: 478 YAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHIL 537

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
            +++  +++    +  + P++    IP + I  +IG GGKVI+ + ++TG  + I++D  
Sbjct: 538 EKLTDTIAQPNADVKAYAPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPV 597

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDG 645
              G ++I  +    I+     I SIT  PE   +Y+ +V+KV+DFGA V +      + 
Sbjct: 598 TEEGIIEILGTEQEGIDKVIAKIESITFKPEKGSVYEVKVIKVLDFGAVVEYMDAPGNEV 657

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI-KLSMKVVDQNT 694
           L+HIS+L+ ER    +DV+K GD + VK    D + +  K+S K + +  
Sbjct: 658 LLHISELAWERTNDVNDVLKLGDVLDVKYFGLDPKTRKDKVSRKALMEKP 707


>gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 613

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/614 (42%), Positives = 396/614 (64%), Gaps = 5/614 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +   VE    G P  +ETG  A+Q++GAV+   G+T VL   V     +   DF PLTV
Sbjct: 1   MEEIKVETVVNGAPYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+E+ YA GKIPGG+++RE +P+E EIL++R IDR IRPLF K + N+  +    +  D
Sbjct: 61  EYREKYYAYGKIPGGFVKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSAD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            +  P V+ +V ASAAL +S +PFEGP+ G +V  ++GQ+++NP   +  +  L++ V+G
Sbjct: 121 DQYDPDVLGIVGASAALHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           ++DA++MVE  A ++ E+V+L+A++FGH E K +IE   +L     K+ + I   +    
Sbjct: 181 SKDAIVMVEGGAKEVPEEVILEAMLFGHQEIKKLIELQEELRAKYGKDKLEIPIDEEEIL 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           L+E+  ++  E +R +  I +K  R KQI+ + +++ +    E       +   V++D+ 
Sbjct: 241 LKEKFKELAYERIREAFNISDKKERNKQINAIFEEIKTTL--EIPEEKVKKASFVYKDVV 298

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           + V+R ++L +  R+DGR  E +R I  +VG+  R HGS++F RG TQA V VTLG+  +
Sbjct: 299 SNVMRDLVLYENRRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSE 358

Query: 360 EQYVDSLS-GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            Q  +S+  G     FM+HYNF P +TGE       SRREIGHG LA RA+ P++P   +
Sbjct: 359 GQIEESIEAGETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAERALEPLIPSEEE 418

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPY +R+VS+I ES+GS+SMATVCG SLAL DAGVP+ K VAGIAMGL+K  D F++LSD
Sbjct: 419 FPYVIRVVSDILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  G+T++QMD+K+ G+++ I+  AL+QA+ GR +IL+ M + 
Sbjct: 479 ILGDEDHLGDMDFKVAGTRDGVTSIQMDIKVRGLTKEILQKALEQARVGRYYILDLMYQA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + E R +L  + P V  + + P++I  +IG  GK I+ I+E+TG K+++D  G VKI ++
Sbjct: 539 IPEPRKELSPYAPTVTTLRVLPEKISVIIGPAGKNIKKIIEETGVKIDLDPTGLVKIYAT 598

Query: 599 SLAEIEAAREMIRS 612
           S    E A +MI  
Sbjct: 599 SKVAAEKAIDMINQ 612


>gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans
           DSM 18053]
 gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans
           DSM 18053]
          Length = 713

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/707 (42%), Positives = 438/707 (61%), Gaps = 13/707 (1%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           +F++ T  I    GR + +ETG++A+Q+DG+V+   G T++LATVV ++ +K+G DF PL
Sbjct: 2   LFNIVTKTITLPDGREITIETGKLAKQADGSVVVRLGNTMLLATVVANKDIKEGLDFLPL 61

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           +V+YQE+  + G+IPG + RRE + +++E+L SR++DR +RPLF   Y  E QV I ++ 
Sbjct: 62  SVDYQEKFASAGRIPGSFQRREGKLSDHEVLTSRLVDRVLRPLFPDDYHAEVQVNILLIS 121

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-RLDEDQGSLDLFV 178
            D E+ P  ++ +AASAAL  S +PF GPV   +V  I+G+YV+NP        +LDL V
Sbjct: 122 ADAEALPDALAALAASAALAASDIPFGGPVSEVRVAKIDGEYVINPGTTALANATLDLMV 181

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK-EPIVID-SKD 236
             T + + MVE E +++SE+ V++A+   H   K    A+ +      K E         
Sbjct: 182 GATYNDIAMVEGEMSEVSEEEVIEALKIAHEAIKTQCLALKEFEAAVGKTEKREYVGDPA 241

Query: 237 FSKLEEEMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVS 293
              LE  + +     +     +    K VR      + ++  +  + E +  +NEG    
Sbjct: 242 DDALEARLREFAYGKIYAVTQLGSTNKTVRKDGFKAVWEEFKTTITEEEAAEFNEGLAKR 301

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
            F D+  +  R ++LD++ R+DGR  + VR I+++V  L   HGS+LF RG+TQ++  VT
Sbjct: 302 YFNDLVWEASRRLVLDERKRLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTVT 361

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LGT++DEQ VD+      + FM+HYNF   +TGEV     P RRE+GHG LA RA+  VL
Sbjct: 362 LGTKQDEQIVDTPLKYGYSKFMLHYNFPGFSTGEVKPNRGPGRREVGHGNLALRALKKVL 421

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P     PYT+RIVS+I ES+GSSSMATVC  SLALMD+G+ I  PV+GIAMGL+ D    
Sbjct: 422 PAEGDNPYTIRIVSDILESNGSSSMATVCAGSLALMDSGLKIKAPVSGIAMGLISDEATG 481

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +LSDI GDEDHLG MDFKV GT  GITA QMDMK+ G+S  ++  AL QAK GRLHI
Sbjct: 482 KYAVLSDILGDEDHLGDMDFKVTGTAEGITACQMDMKVNGLSFEVLTEALMQAKAGRLHI 541

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L EM+K ++ESR  L   TPR  ++ I  + I  VIG GGKV++ I +++GA ++I++  
Sbjct: 542 LGEMNKTITESRPDLKPHTPRAIVIKIDREMIGAVIGPGGKVVQDIQKESGATISIEEKD 601

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V I S+  + ++ A   ++ I  VPE+ +IY G+V  +M FGAFV F   +DGL+H
Sbjct: 602 GAGFVSIFSADKSSMDKAVARVKGIILVPEIGEIYSGKVKSIMPFGAFVEFLPGKDGLLH 661

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           IS++  ER+ K   V++ G+ V VKL++ D + GK +LS KV+    
Sbjct: 662 ISEIKWERLEKMDGVLEVGEEVQVKLVEIDKKTGKYRLSRKVLLPKP 708


>gi|239982654|ref|ZP_04705178.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
 gi|291454495|ref|ZP_06593885.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
 gi|291357444|gb|EFE84346.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
          Length = 735

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/709 (39%), Positives = 415/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    V
Sbjct: 76  AAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETIMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G       
Sbjct: 136 VAINAASCSTQLAGLPFSGPIGGTRVALINGQWVGFPTHTELEDAVFDMVVAGRVLDDGD 195

Query: 183 DAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA +             +E+VV   +       K + +A S+LA   AK   
Sbjct: 196 VAIMMVEAEATEKTIQLVKDGAAAPTEEVVAAGLEAAKPFIKALCKAQSELAAKAAKPTG 255

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             PI +D +D   + E +   ++ +L  +  I  K  R  ++D +K         +    
Sbjct: 256 EFPIFLDYQD--DVLEALKAAVESELAQALTIGGKQEREAELDRVKAVAAEKLLPQFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +  ++VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISAAYRALTKELVRRRVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL
Sbjct: 433 RALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 ADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLL 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL
           8301]
          Length = 747

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/709 (40%), Positives = 433/709 (61%), Gaps = 17/709 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           +++     I  A GR +++ETG++A+Q+DG+V+   G+T++L TVV  +  K   DF PL
Sbjct: 6   LYNAVRKIITLADGRQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPL 65

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  AVG+ PGG+++RE+R  ++E+L++R+IDR++RPLF   Y  E  V +N++ 
Sbjct: 66  QVEYKEKYAAVGRFPGGFMKREARANDSEVLVARLIDRALRPLFPADYHAEVYVTVNLIS 125

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D +  P  ++ +AASAAL +S +PF GP+   +V   NG+Y +NP   E  +  LD+ V
Sbjct: 126 ADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVVRRNGEYAINPTYSEMPECDLDIMV 185

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
            GT D +LMVE E  ++SE+V+L AI F H E K       +L+K   K+  V  +    
Sbjct: 186 GGTIDNILMVEGEMKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKD--VKRTYCHE 243

Query: 239 KLEEEMSQ-MIKEDLRVSCFIPE----KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS 293
             +EE+ Q +I+E    +  I      K+ R  + + L+ +  + +S E        I  
Sbjct: 244 VNDEELRQTIIRELYDKAYAIATSGTMKHEREDKFNALEAEFAARYSEEELIEKAPLIHK 303

Query: 294 VFE-DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            F  D+Q K +R ++LD+ VR+DGR ++ +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 304 YFHDDVQKKAMRNMILDEGVRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTV 363

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+  D +       F++HYNF P +TGE       SRREIGHG LA RA+ P+
Sbjct: 364 TLGTKLDEKVKDEVLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPM 423

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD- 471
           +P     PY +R+VS+I ES+GSSSMATVC  +LALMDAGV + KPV+GIAMGL+ D + 
Sbjct: 424 IPLGEDNPYAVRVVSDILESNGSSSMATVCAGTLALMDAGVKLRKPVSGIAMGLISDSET 483

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  ++  AL+QA++GR+H
Sbjct: 484 GKWAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKGRMH 543

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE---QTGAKVNI 587
           IL ++++ ++E R       PR+  + IP D I  VIG GGKVI+ I +    T     +
Sbjct: 544 ILGKLTECIAEPREDYKPCVPRIVQIVIPQDMIGPVIGPGGKVIQDIQKTTNTTITITEV 603

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+ G V I       ++ A   I++I  +PEV + Y G+V  ++ FGAFV     +D L+
Sbjct: 604 DNKGIVDIFGIDKEALDGALARIKAIVAIPEVGETYHGKVRSIVAFGAFVEIMPGKDALL 663

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           HIS++  +R     +  +KEGD + VKL+  D +  K+KLS K +    
Sbjct: 664 HISEIDYKRFETMEETGLKEGDEIDVKLIGVDPKTNKLKLSRKALLPKP 712


>gi|319953765|ref|YP_004165032.1| polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
           DSM 14237]
 gi|319422425|gb|ADV49534.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
           DSM 14237]
          Length = 747

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/699 (39%), Positives = 422/699 (60%), Gaps = 16/699 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G  ++L TVV +   +   DF PLTV+Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVQSGNCMLLCTVVSNYK-QSDVDFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD    P 
Sbjct: 69  AAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPE 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS  PFE  +  A+V  +NG++V+NP   +  +  L++ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDFPFECAISEARVARVNGEFVINPTRAQLAESDLEMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEM 244
           MVE E +++SE+V+ DAI F H   K  I A  +LA+   K+       ++   +LE+ +
Sbjct: 189 MVEGEMDEISEEVMADAIKFAHEAIKVQIAAQLRLAEAFGKKETREYATAEVNEELEKRI 248

Query: 245 SQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             +  +     +     K  R     ++K+++ + F+ E  +     +   +   + + V
Sbjct: 249 HDLAYDKCYAIAKKGTSKAERTNAFAEVKEEVKASFTEEEMAEFGHLVGGYYRKAEKEAV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + L + +R+DGR ++ +R I  ++  L  THGS++F RG+TQA+  VTLGT  D   +
Sbjct: 309 RELTLSEGLRLDGRKTDEIRPIWCEIDYLPSTHGSAIFTRGETQALATVTLGTSRDANKI 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S     +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P     PYT+
Sbjct: 369 DMPSFEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRGLKGMIPS--DCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSE+ ES+GSSSMATVC  ++ALMDAGV + +PV+GIAMGL+ DGD + +LSDI GDE
Sbjct: 427 RVVSEVLESNGSSSMATVCAGTMALMDAGVKMKRPVSGIAMGLISDGDRYAVLSDILGDE 486

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  +S   
Sbjct: 487 DHLGDMDFKVTGTSEGITACQMDIKIKGLSYEILVNALKQARDGRLHILGKITDTISTPA 546

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIASS 598
             +    P++    IP + I  +IG GGKVI+ + ++TG  + I++D     G V+I   
Sbjct: 547 EDVKPHAPKMVTRRIPNEFIGALIGPGGKVIQEMQKETGTTIVINEDPVTEEGIVEILGV 606

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTER 656
               I+A    I SI   PE+ K Y+ +V+K++DFGA V +      + L+H+S+L+ ER
Sbjct: 607 GQEGIDAVLAKIDSILFKPELGKSYEVKVIKMLDFGAVVEYAEAPGNEVLLHVSELAWER 666

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
               SDVV  GD   VK    D + +  K+S K +    
Sbjct: 667 TENVSDVVNMGDVFEVKYFGVDPKTRKEKVSRKALLPKP 705


>gi|296127904|ref|YP_003635154.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
 gi|296019719|gb|ADG72955.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
          Length = 791

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/708 (38%), Positives = 416/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T++L+     +  ++  DFFPLTV+ +ER YA
Sbjct: 56  FGTRTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREAFDFFPLTVDVEERQYA 115

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+ + IL  R+IDR +RPLF K  +NE QV++ V+  + + +  V+
Sbjct: 116 AGKIPGAFFRREGRPSTDAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAYDVL 175

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AAS +  LSGLPF GPV   ++  ++GQ+V  PR  E +  + D+ V+G       A
Sbjct: 176 AINAASISTQLSGLPFSGPVAATRLALVDGQWVAFPRYSERERSTFDIVVAGRVVGDDVA 235

Query: 185 VLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           + M+E +A + + +++          + +  G    KP I+ + +          K    
Sbjct: 236 IAMIEADAPENAWNLIHGGGGTAPTEEVVAQGLEASKPFIKVLVEAQQQLAAQAAKETQT 295

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P   D +  +     + Q   E L  +  I  K  R  ++D++K ++    +++     
Sbjct: 296 FPTFPDYQPDAF--AAVEQAASERLSAALQIAGKQERENRLDEIKGEVAGELAAQFEG-R 352

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +Q +++R  +L    R+DGR    +R +SA+V +L RTHGS+LF RG+TQ
Sbjct: 353 EKEISAAYRSLQKQLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGETQ 412

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +DSLS   R  +M HYNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 413 ILGVTTLNMLRMEQQIDSLSPETRKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAER 472

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC ++L+L++AGVP+  PVAGIAMGLV
Sbjct: 473 AIVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAMGLV 532

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 533 SDTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLAGALTQ 592

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK  RL IL+ +++ +     ++  F PRV  + +P D+I  VIG  GK+I  I E+TGA
Sbjct: 593 AKEARLAILDVIAEAIDVP-DEMSPFAPRVISVKVPVDKIGEVIGPKGKMINQIQEETGA 651

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I ++     EAAR  I +I    +PE+ + + G VVK   FGAF+    
Sbjct: 652 DISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEIGERFVGTVVKTTTFGAFISLSP 711

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 712 GKDGLLHISQIRKLVGGKRVENVEDVLAVGQKVQVEIGEIDPRGKLSL 759


>gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri]
          Length = 702

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/692 (41%), Positives = 433/692 (62%), Gaps = 11/692 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
               +     + L +E G++A+Q+ G+VL  YG+TVVL T   +  L +  DFFPLTV +
Sbjct: 3   KQVFKKIINNQELIVEHGQLAKQASGSVLVRYGDTVVLVTATVNNKLSE-VDFFPLTVVF 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ Y+VGKIPGG+L+RE +P+E   L +R+IDR++RPLFS+ ++NE Q++INV+  D +
Sbjct: 62  QEKLYSVGKIPGGFLKREGKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDND 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDE-DQGSLDLFVSGT 181
           +   +VS+ AAS AL +S +PF GPV GA V        ++NP L++ + G ++L V+GT
Sbjct: 122 NDVRMVSLFAASLALSISKIPFAGPVAGALVTVDQKNNIIINPTLEQINDGQMELIVAGT 181

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
            +A+ MVE  A ++SE+++L AI+ GH+  + +I    ++        + ++      ++
Sbjct: 182 DEAINMVEAGAKEVSENLMLQAILAGHDVIQQLIAFQHEIIAKVGVPKMEVELFQVRPEI 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS------YFSSEHSSWNEGEIVSV 294
              ++    +DL  +  I EK  R + I+ L ++ +         S +       E+ + 
Sbjct: 242 ITYVNNNYAKDLITAARIKEKTKRYETIEHLIEQAIKNYPMPVSLSEKEQKQLTVELKTA 301

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             +I  + VR  +L  K R+DGR  + +R +S+++ +L   HGS+LF RG+TQ + VVTL
Sbjct: 302 LHNIIRQEVRRQILIDKTRLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTL 361

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G   + Q +D ++  +   FM HYNF   + GE  RMG PSRREIGHG L  + +  ++P
Sbjct: 362 GALGENQIIDGITDEESKRFMHHYNFPAFSVGETGRMGPPSRREIGHGALGEKVLLQIIP 421

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
               FPYT+RIVSE+ ES+GS+S A++C ++LALM AGVPI+ PV GIAMGL+K+ +++ 
Sbjct: 422 SEKVFPYTIRIVSEVLESNGSTSQASICAATLALMAAGVPITAPVVGIAMGLIKEKNNYT 481

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDHLG MDFKVAGT +GI A+QMD+KI GI++ I+  AL+ AK+ RL IL+ 
Sbjct: 482 ILTDIQGMEDHLGDMDFKVAGTATGICALQMDIKIVGINKAILQEALKAAKKARLTILDN 541

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-KVNIDDDGTV 593
           +   +S  R  L    P+++   IP D+IR VIG GGK+I  I+E++   K++I+DDG V
Sbjct: 542 VLATISAPRTHLAPTAPKMKTFMIPVDKIREVIGPGGKMITAIIEKSDDVKIDIEDDGQV 601

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I       IE A ++I++I     V +   G VVK+  FG FVH     DGL+HIS+L+
Sbjct: 602 TIYHKETTAIEKAYQLIKAIAMPVVVGEKIIGPVVKIEKFGVFVHLKENLDGLIHISKLA 661

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            + V K  D+V+  D V VK+++ D +GKIKL
Sbjct: 662 KQHVEKAEDIVQLNDIVKVKVIEIDGKGKIKL 693


>gi|171741337|ref|ZP_02917144.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
           27678]
 gi|171276951|gb|EDT44612.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
           27678]
          Length = 880

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/724 (41%), Positives = 429/724 (59%), Gaps = 38/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV           K + EA ++L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGFEAAKPFIKVICEAQAELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +    L   + ++   DL  +  I EK  R  +I ++K+ + +  + E +  ++
Sbjct: 258 EFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAEEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILASA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++  F PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAKEARTTILEVINECIDGP-AEMSPFAPRIITTTVPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+E+I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFEDQE 736

Query: 694 TGKP 697
           +  P
Sbjct: 737 SSAP 740


>gi|313149393|ref|ZP_07811586.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           3_1_12]
 gi|313138160|gb|EFR55520.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           3_1_12]
          Length = 711

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/652 (40%), Positives = 402/652 (61%), Gaps = 17/652 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 64  MINPIVKTIELGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 123

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 124 QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 183

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP  D+ ++  +D+ V
Sbjct: 184 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKADMDIMV 243

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +M  K   V       
Sbjct: 244 AATYENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGKT--VKREYCHE 301

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +EE+ + + +      +         K+ R    D ++ +  + FS E        I 
Sbjct: 302 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 361

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 362 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 421

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 422 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKKM 481

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 482 IP--EDYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 539

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 540 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 599

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++ + ++E R +L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 600 ILGKIQETIAEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 659

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
              G ++I+ ++   I+ A  +I+ I  VPE+ ++YKG+V  +M +GAFV F
Sbjct: 660 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEF 711


>gi|302542113|ref|ZP_07294455.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459731|gb|EFL22824.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 743

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/709 (39%), Positives = 414/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    V
Sbjct: 76  AAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E ++   D+ V+G       
Sbjct: 136 VAINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHSELEEAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA               +E++V   +       K + +A S LA   AK   
Sbjct: 196 VAIMMVEAEATTQTIQLVKDGAEAPTEEIVAAGLEAAKPYIKVLCKAQSDLAAKAAKPTG 255

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             PI +D +D   + E ++  ++++L  +  I  K  R  ++D +K         +    
Sbjct: 256 EFPIFLDYQD--DVLEALTAAVRDELSQALTIAGKQEREAELDRVKGLAAEKLLPQFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPETRRRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL
Sbjct: 433 RALLPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 AEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLL 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLAVGSKVQVEIAEIDQRGKLSL 720


>gi|296117686|ref|ZP_06836270.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969417|gb|EFG82658.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 779

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/718 (38%), Positives = 415/718 (57%), Gaps = 43/718 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R +  ETG++ARQ+DG+V   + + T++L TV      ++G DFFPLTV+ +ER Y
Sbjct: 58  DFGTRTITFETGQLARQADGSVTTYFDDDTMLLTTVTASNQPREGLDFFPLTVDVEERMY 117

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE+RP+   IL  R+IDR +RP F K  +NE QVI  V+  D      V
Sbjct: 118 AAGKIPGSFFRREARPSTEAILACRLIDRPLRPTFVKGLRNEVQVINTVLSLDPAEYYDV 177

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           +++  +SAA  LSGLP  GPV G ++  +       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 178 IAINGSSAATQLSGLPVSGPVGGVRMALLADDKHPEGQWVAFPNAEQHERALFEMVVAGR 237

Query: 182 ------------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EA 217
                         A++MVE  A     + V +         +  G    KP I    EA
Sbjct: 238 IVSRKNKGKNVDDVAIMMVEAGAGVHVHERVAEGAPAPQESTVAAGLEAAKPFIKTLCEA 297

Query: 218 ISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
            + LA+  AKE            ++ + +++  ++ L     I  K  R +  +   +++
Sbjct: 298 QAGLAERAAKETKEFQLFPPYADEVYDAVARKAEKKLSKLMTIAAKQERDEATNAHMEEV 357

Query: 276 VSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
            +      +  +   +I + +  +  ++VR  +L +  R+DGR +E +RD+ A++GL+ R
Sbjct: 358 EAQLLEVFTEDDASKQIRAAYNQLMKEIVREKILTEGFRIDGRAAEDIRDLGAEIGLIPR 417

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS+LF RG+TQ + V TL   + EQ +DSL+  +   ++ HYNF P +TGE  R+G+P
Sbjct: 418 VHGSALFERGETQILGVTTLDMLKMEQTIDSLTPVESKRYIHHYNFPPYSTGETGRVGSP 477

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PV+P   QFPYT+R VSE   S+GS+SM +VC S+++L +AGVP
Sbjct: 478 KRREIGHGALAERALLPVIPPREQFPYTIRQVSEALGSNGSTSMGSVCASTMSLYNAGVP 537

Query: 455 ISKPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           +  PVAGIAMGLV       + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ 
Sbjct: 538 LKAPVAGIAMGLVSGEVDGEERFVALTDILGAEDAFGDMDFKVAGTSDYITALQLDTKLD 597

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++  AL QA+  R  IL+ M++ +     ++    P++  + IP  +I  +IG  
Sbjct: 598 GIPSEVLANALSQARNAREEILDIMAEGIDGP-DEMSPLAPKITSIKIPVSKIGELIGPK 656

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVV 628
           GK I  I E+TGA V+I+DDGTV ++++S    +AA E + +I    +P+V + + G VV
Sbjct: 657 GKTINTITEETGADVSIEDDGTVYVSATSGEAADAAIEKVNAIANPQLPKVGERFLGTVV 716

Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           K + FGAFV     RDGL+HIS L   ER+ K  DVV  GD + V++ D D+RGKI L
Sbjct: 717 KTVAFGAFVSITPGRDGLIHISNLGGDERIEKVEDVVNVGDKIQVEIADIDNRGKISL 774


>gi|187611321|sp|A9WPX4|PNP_RENSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 746

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/709 (40%), Positives = 417/709 (58%), Gaps = 37/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    + T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ A+S +  LSGLPF GP+ G +V  I  Q+V  PR  E +    ++ V+G       A
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFNMVVAGRVAGDDVA 197

Query: 185 VLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           ++MVE EA   S +++          + +  G    KP I+A+ +          K   +
Sbjct: 198 IMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCEAQADLAARAAKPTVE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++      L     I +K  R    D LK ++VS  SS+     
Sbjct: 258 FPIFLDYQD--DIFEAVNAAAAAKLTEVFQIADKQERDNASDALKDEVVSSLSSKFDG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + F  +  +VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F RG+TQ
Sbjct: 315 EKEISAAFRSVTKQVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 IMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV
Sbjct: 435 ALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLV 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 495 SDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAAALKQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 555 AREARLHILGVLNAAIDVP-DELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I +++    +AAR  I +I    +PE+ + Y G VVK   FGAFV    
Sbjct: 614 DISIEDDGTVYIGATNGPSADAARSAINAIANPQIPEIGERYLGTVVKTTTFGAFVSLTP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
            +DGL+H+++L      +RV    DVV  G  + V++   DDRGK+ LS
Sbjct: 674 GKDGLLHVTELRKINDGKRVDNVDDVVSVGQKIQVEITKIDDRGKLSLS 722


>gi|297156777|gb|ADI06489.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           bingchenggensis BCW-1]
          Length = 750

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/720 (39%), Positives = 419/720 (58%), Gaps = 38/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIRGQWVAFPTHSELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA               +E+VV   +       K + +A S LA   AK    
Sbjct: 197 AIMMVEAEATDKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++++L  +  I  K  R  ++D +K         +     
Sbjct: 257 FPIFLDYQD--DVLEALTAAVRDELAQALTIAGKQERETELDRVKGLAAEKLLPQFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP    FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALLPVLPSREDFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLRAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +DGL+HISQ+      +RV    DV+K G  V V++ + D RGK+ L + V++   G  
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL-IPVIEDEEGSD 731


>gi|296454907|ref|YP_003662051.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296184339|gb|ADH01221.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 914

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/713 (40%), Positives = 425/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    + E +  ++
Sbjct: 258 EFQLFPEYTDELYARIDEIAHQDLNEALSIAEKLPRQDRIHEIKEHVREVLADEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+    +P ++I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARATILEVINECIDGP-AEMSEFAPRIITTTVPVEKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      + A+ +I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|291302562|ref|YP_003513840.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290571782|gb|ADD44747.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 825

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/701 (40%), Positives = 411/701 (58%), Gaps = 29/701 (4%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
             R +   TGR+A+Q+ G+VL   G+TVVL+T    +  K+  DFFPLTV+ +ER YA G
Sbjct: 30  GKREITFSTGRLAKQAAGSVLVQLGDTVVLSTTAAGKHPKEHFDFFPLTVDVEERMYAAG 89

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QVI  V+  D      VV+M
Sbjct: 90  RIPGSFFRREGRPSEDAILTCRLIDRGLRPSFIKGLRNEVQVIETVLALDEAHPYDVVAM 149

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QDAV 185
             ASA+  LSGLP +GP+   +V  ING++V  P L++ +  + D+ V+G        A+
Sbjct: 150 NGASASTALSGLPCQGPLGSTRVANINGEWVAFPTLEQLETATFDMVVTGRVVEGGDVAI 209

Query: 186 LMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           +MVE EA               +E+VV   +         +  A  +LA + AK  +   
Sbjct: 210 MMVEAEATDKAVELIGGGSVAPTEEVVAAGLEAAKPVISELCRAQRELAGVAAKPAVEFP 269

Query: 234 --SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
              +    +   +   +  +L     I +K  R  ++D +K  +V   + E     EGEI
Sbjct: 270 LFPEYGDDVFARVEAEVGTELAAGLTIADKQEREAELDRIKAALVEKIAGEFEE-REGEI 328

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            S    +  K+VR  +L + VR+DGR +  +R +SA+V +L R HGS+LF RG+TQ + V
Sbjct: 329 GSALRSLTKKLVRRRVLTEGVRIDGRGTRDIRPLSAEVKILPRVHGSALFERGETQIMGV 388

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TL     EQ +D+LS   +  +M +YNF P +TGE  R+G+P RREIGHG LA RAI P
Sbjct: 389 TTLNMLRMEQAIDTLSPVSKKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERAIVP 448

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           VLP   +FPY +R VSE   S+GS+SM +VC S+++LM AGVP+  PVAGIAMGL+ D  
Sbjct: 449 VLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLMAAGVPLKAPVAGIAMGLISDEV 508

Query: 472 D----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           D    ++ ++DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  AL QA   
Sbjct: 509 DGKTEYVTITDILGAEDAFGDMDFKVAGTRNFVTALQLDTKLDGIPSDVLAGALSQAYDA 568

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R  I++ M++ ++E    + E  PRV  + +P D+I  VIG  G+ I  I E+TGA ++I
Sbjct: 569 RQAIMDVMAEAIAEPSA-MAETAPRVTTVKVPVDKIGMVIGPKGQTINSITEETGADISI 627

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +DDGT+ I +++    EAA  MI  I +  +P V   + G VVK   FGAF+     RDG
Sbjct: 628 EDDGTIYIGATTGPAAEAAVAMINGIANPTLPNVGDRFLGTVVKTAAFGAFISLVPGRDG 687

Query: 646 LVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           L+HIS++   +R+ K  DV+  GD + V++ D D RGKI L
Sbjct: 688 LLHISKIGDGKRIDKVEDVLNVGDKIEVEIADVDGRGKIYL 728


>gi|212716682|ref|ZP_03324810.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660386|gb|EEB20961.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
           16992]
          Length = 893

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/724 (40%), Positives = 428/724 (59%), Gaps = 38/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ ++SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTLISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L  + AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQTELKNIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287
                 +    L   + ++   DL  +  I EK  R  +I ++K+ + +  + E +  + 
Sbjct: 258 EFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDMDD 317

Query: 288 ---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILASA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++  + PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAKEARTTILEVINECIDGP-AEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+++I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGDGAEKAKQIIEQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFEDQE 736

Query: 694 TGKP 697
           +  P
Sbjct: 737 SSAP 740


>gi|23336421|ref|ZP_00121639.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Bifidobacterium longum DJO10A]
 gi|23466099|ref|NP_696702.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           NCC2705]
 gi|189440526|ref|YP_001955607.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           DJO10A]
 gi|81753609|sp|Q8G447|PNP_BIFLO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702620|sp|B3DPX0|PNP_BIFLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23326831|gb|AAN25338.1| PnpA [Bifidobacterium longum NCC2705]
 gi|189428961|gb|ACD99109.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           DJO10A]
 gi|291516498|emb|CBK70114.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum F8]
          Length = 913

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/725 (40%), Positives = 429/725 (59%), Gaps = 39/725 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    + E +  ++
Sbjct: 258 EFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+   ++P ++I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARATILEVINECIDGP-AEMSEFAPRIITTSVPVEKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQ 692
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++      +
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFEDQE 736

Query: 693 NTGKP 697
           N  +P
Sbjct: 737 NNARP 741


>gi|291456054|ref|ZP_06595444.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
           DSM 20213]
 gi|291382463|gb|EFE89981.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
           DSM 20213]
          Length = 949

 Score =  666 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/714 (41%), Positives = 425/714 (59%), Gaps = 37/714 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ Y
Sbjct: 64  TFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMY 123

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V
Sbjct: 124 AAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDV 183

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           +++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G       
Sbjct: 184 IALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGD 243

Query: 183 DAVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
            A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE 
Sbjct: 244 VAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAAGLEAAKPFIKVICEAQDELKKIAAKET 303

Query: 230 IVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
                  +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    + E +  +
Sbjct: 304 KEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEFTDMD 363

Query: 288 E----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           +     E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 364 DAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQR 423

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG 
Sbjct: 424 GETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGA 483

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 484 LAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIA 543

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 544 MGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAA 603

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           ALQQAK  R  IL  +++ +     ++ EF PR+    +P ++I  VIG  GK+I  I E
Sbjct: 604 ALQQAKEARATILEVINECIDGP-AEMSEFAPRIITTTVPVEKIGEVIGPKGKMINQIQE 662

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA++ I+DDGTV I+S      E A+ +I SI    VPE  + Y G+VVK   FGAFV
Sbjct: 663 DTGAEIAIEDDGTVFISSEGGEAAEKAKSIIDSIANPHVPEAGETYNGKVVKTTSFGAFV 722

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 723 NLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAI 776


>gi|239620975|ref|ZP_04664006.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|322689964|ref|YP_004209698.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322691904|ref|YP_004221474.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|239516076|gb|EEQ55943.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|320456760|dbj|BAJ67382.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320461300|dbj|BAJ71920.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 913

 Score =  666 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/713 (40%), Positives = 426/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    ++E +  ++
Sbjct: 258 EFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLANEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+    +P ++I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARATILEVINECIDGP-AEMSEFAPRIITTTVPVEKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      + A+ +I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|117928715|ref|YP_873266.1| polynucleotide phosphorylase/polyadenylase [Acidothermus
           cellulolyticus 11B]
 gi|187470956|sp|A0LV20|PNP_ACIC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117649178|gb|ABK53280.1| Polyribonucleotide nucleotidyltransferase [Acidothermus
           cellulolyticus 11B]
          Length = 782

 Score =  666 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/720 (40%), Positives = 428/720 (59%), Gaps = 41/720 (5%)

Query: 3   DVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF 57
           DVHT E       +  R ++ ETGR+ARQ+ G+ +A  G+T+VL+     +  ++  DFF
Sbjct: 5   DVHTAEAVIDNGSFGVRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFF 64

Query: 58  PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117
           PLTV+ +ER YA G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ V
Sbjct: 65  PLTVDVEERLYAAGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTV 124

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
           +  D E    VV++ AAS + +L+GLPF GP+ G ++ +I+G +V  P   E +  + D+
Sbjct: 125 LAVDPEHLYDVVAINAASMSTLLAGLPFSGPIGGVRMAHIDGTWVAFPTYSELERATFDM 184

Query: 177 FVSGT-----QDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAIS 219
            V+G        A++MVE EA +             +E+VV   +       + +  A S
Sbjct: 185 VVAGRVLPDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLCAAQS 244

Query: 220 KLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           +LA   AK     P+  D +D   + + ++  +++D+  +  I  K  R   +D++    
Sbjct: 245 ELAARAAKPVTEFPLFRDYED--DVYDAVAATVRDDVARALTIAGKQEREAALDEVANTA 302

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +       +   E EI++    +  K+VR  ++ +KVR+DGR    +R ++A+VG++ R 
Sbjct: 303 LGRLGERFAG-REKEILAALRALTKKLVRERIIREKVRIDGRGLTDIRPLTAEVGIVPRV 361

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS+LF RG+TQ + V TL     EQ +D++S   +  +M HYNF P +TGEV R+G+P 
Sbjct: 362 HGSALFERGETQILGVTTLNMLRMEQQLDTVSPRTKKRYMHHYNFPPYSTGEVGRVGSPK 421

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+
Sbjct: 422 RREIGHGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPL 481

Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGL+ D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 482 RAPVAGIAMGLISDTVDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDG 541

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++  AL QA+  RL IL+ M+K +SE    +  + PR+  + IP DQI  VIG  G
Sbjct: 542 IPASVLAAALPQAREARLTILDVMAKAISEPAP-MSPYAPRIITIKIPVDQIGAVIGPKG 600

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           K+I  I + TGA++ I+DDGT+ I ++     EAAR  I +I    +PEV + Y G VVK
Sbjct: 601 KIINQIQDDTGAEITIEDDGTIYIGATEGTAAEAARAAISAIANPQLPEVGERYLGTVVK 660

Query: 630 VMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              FG FV     +DGL+HIS+L       RV    DV+K GD + V++ D D RGK+ L
Sbjct: 661 ATPFGVFVSLLPGKDGLLHISELRKMAGGRRVENVEDVLKVGDKIQVEIRDIDARGKLSL 720


>gi|227546434|ref|ZP_03976483.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227213091|gb|EEI80970.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 913

 Score =  666 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/725 (40%), Positives = 429/725 (59%), Gaps = 39/725 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWRLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    + E +  ++
Sbjct: 258 EFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+   ++P ++I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARATILEVINECIDGP-AEMSEFAPRIITTSVPVEKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQ 692
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++      +
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFEDQE 736

Query: 693 NTGKP 697
           N  +P
Sbjct: 737 NNARP 741


>gi|225351118|ref|ZP_03742141.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158574|gb|EEG71816.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 887

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/724 (40%), Positives = 428/724 (59%), Gaps = 38/724 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA ++L  + AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQAELKNIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN- 287
                 +    L   + ++   DL  +  I EK  R  +I ++K+ + +  + E +  + 
Sbjct: 258 EFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEIKEGVKATLAGEFTDMDD 317

Query: 288 ---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVMPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILASA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++  + PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAKEARTTILEVINECIDGP-AEMSPYAPRIITTTVPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+++I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGDGAEKAKQIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVDDRGKISLAIPGFEDQE 736

Query: 694 TGKP 697
           +  P
Sbjct: 737 SSAP 740


>gi|317483033|ref|ZP_07942035.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915534|gb|EFV36954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 913

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/713 (40%), Positives = 425/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    + E +  ++
Sbjct: 258 EFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+    +P ++I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARATILEVINECIDGP-AEMSEFAPRIITTTVPVEKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      + A+ +I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGDAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAI 729


>gi|38234048|ref|NP_939815.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564774|sp|Q6NGP1|PNP_CORDI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|38200310|emb|CAE49995.1| guanosine pentaphosphate synthetase/ polyribonucleotide
           nucleotidyltransferase [Corynebacterium diphtheriae]
          Length = 755

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/723 (39%), Positives = 421/723 (58%), Gaps = 50/723 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DG+V     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 29  DFGKRTIRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMY 88

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  + +    V
Sbjct: 89  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSVNPQDMYDV 148

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT 181
           V++  ASAA  LSGLP  GPV G ++  I       GQ++  P  ++ +Q   +L V+G 
Sbjct: 149 VAINGASAATQLSGLPVSGPVGGVRMALIADDAHPKGQWIAFPTHEQHEQALFELVVAGR 208

Query: 182 ------------QDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEA 217
                         A++MVE  A +             +E VV + +       + +  A
Sbjct: 209 IVSKKQGKKTVDDVAIMMVEAGATEQVVDRVKAGAPAPTESVVAEGLEAAKPFIEVLCRA 268

Query: 218 ISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ----ID 269
            + LA+  AKE    P+     D   + + + + + + LR    I  K  R +     ++
Sbjct: 269 QAGLAERAAKETQEFPLFPPYTDV--VYDAVEKKVSKKLRSLLTIKSKQDRDEATNAYME 326

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
           +++  +++   S+  +     I + +  +  K+VR ++L +  R+DGR    +RD+  +V
Sbjct: 327 EIEADLIAQLGSDDEAAASKAIRAAYNAVMKKIVRHMILTEHFRIDGRGVTDIRDLGVEV 386

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
            L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+      ++ HYNF P +TGE  
Sbjct: 387 DLIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPATSKRYIHHYNFPPYSTGETG 446

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L 
Sbjct: 447 RVGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLY 506

Query: 450 DAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+
Sbjct: 507 NAGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTRQFITALQL 566

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D K+ GI   ++  AL QA   R  IL+ M++V+     ++ ++ PR+  + +P ++I  
Sbjct: 567 DTKLDGIPSEVLAQALSQANDARNTILDTMAEVIETP-DEMSDYAPRITAITVPVNKIGE 625

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIY 623
           VIG  GK I  I E+TGA ++I++DGTV ++++S A  EAA E I +I    +P+V + +
Sbjct: 626 VIGPKGKTINSITEETGANISIEEDGTVYVSAASGAAAEAAIEKINAIANPQLPKVGERF 685

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G VVK   FGAFV     RDGLVHIS+L   +R+ K  DVV  GD + V++LD D+RGK
Sbjct: 686 LGTVVKTTAFGAFVSLLPGRDGLVHISKLGGGKRIEKVEDVVNVGDKLEVEILDIDNRGK 745

Query: 683 IKL 685
           I L
Sbjct: 746 ISL 748


>gi|295395380|ref|ZP_06805579.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971702|gb|EFG47578.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 749

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/710 (39%), Positives = 411/710 (57%), Gaps = 36/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++    ++  TGR+A+Q+ G   AT  GET +L+     ++ ++G DFFPLTV+ +ER Y
Sbjct: 21  KFGKHEIEFGTGRLAQQAAGCATATLDGETTLLSATAVSKNPREGFDFFPLTVDVEERMY 80

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RPT + IL  R+IDR +RP F K  +NE Q+++ V+    +     
Sbjct: 81  AAGKIPGSFFRREGRPTTDAILACRLIDRPLRPSFVKGLRNEVQIVVTVLSMHPDHLYDT 140

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QD 183
           +++ AAS +  L GLPF GP+ G ++  I+ Q+V  P   + +    D+ V+G       
Sbjct: 141 LAINAASMSTQLGGLPFSGPIGGVRIALIDDQWVAFPNYSQLENAVFDMAVAGRVVGDDV 200

Query: 184 AVLMVELEANQLSEDVV--------LDAIIFGHNECKPVIE----AISKLAKMCAKEPIV 231
           A++MVE EA++ S D++         + +  G    KP I     A  +LA   AK    
Sbjct: 201 AIMMVEAEASENSWDLIQGGARKPTEEVVAEGLEAAKPFIRELVRAQQELADRVAKPTAE 260

Query: 232 ID-SKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
            +  KD+   + E + ++  +    +  I +K  R    D+L   +++    +     E 
Sbjct: 261 FELFKDYEDDVYEAVRELAWDKQTQNFQIADKQEREAAGDELLDSLLNDLGEKFEG-RES 319

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EIV     +  ++VR  +L ++VR+DGR  + +R +SA+  +L R HGS+LF RG+TQ +
Sbjct: 320 EIVGALNSMTKEIVRKRILTERVRIDGRGIKDIRPLSAETNILPRVHGSALFERGETQIM 379

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            V TL   + EQ +DSL+      ++ HYNF P +TGE  R+G+P RREIGHG LA RA+
Sbjct: 380 GVTTLDMLKMEQQIDSLTPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERAL 439

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            PV+P    FPY +R VSE   S+GS+SM +VC S+++L+ AGVP+  PVAGIAMGLV D
Sbjct: 440 VPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTMSLLSAGVPLRAPVAGIAMGLVSD 499

Query: 470 --------GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
                      +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++  AL
Sbjct: 500 VIETDQGKQTAYAALTDILGAEDAFGDMDFKVAGTKDFITAIQLDTKLDGIPASVLAAAL 559

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QA+  RL IL+ ++  ++E   ++    PR+  + IP D+I  VIG  GK+I  I E T
Sbjct: 560 KQAREARLTILDVLTAAIAEP-GEMAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQEDT 618

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGTV I ++     EAAR  I +I    VPEV + Y G VVK+M FGAFV  
Sbjct: 619 GADISIEDDGTVFIGATDGPAAEAARSAINAIANPQVPEVGERYLGTVVKLMSFGAFVSL 678

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS+L      +RV    DV+  G  + V++   DDRGK+ L
Sbjct: 679 TPGKDGLLHISELKKLNGGKRVEDAEDVLGVGQKIQVEITKVDDRGKLSL 728


>gi|332518964|ref|ZP_08395431.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044812|gb|EGI81005.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
           5H-3-7-4]
          Length = 750

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/701 (38%), Positives = 429/701 (61%), Gaps = 18/701 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   +   DF PLTV+Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYK-QADVDFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD +  P 
Sbjct: 69  AAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHDDDVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS  PFE P+  A+V  +NG++++NP   + ++  +D+ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDFPFECPISEARVGRVNGEFIINPTRAQLEESDIDMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEM 244
           MVE E +++SE+ + +AI F H   K    A  KLA+   K+        ++ ++L +++
Sbjct: 189 MVEGEMDEISEEEMTEAIKFAHEAIKVQCAAQVKLAEAFGKKETREYEPEREDAELAQKI 248

Query: 245 SQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             M  + +   +     K+ R     ++K+++ + FS E  +   G +   +   +   V
Sbjct: 249 HDMAYDKVYAVAQAGSAKHERSAAFAEIKEEIKATFSEEELADFGGLVSKYYSKAEKAAV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + L++ +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +   +
Sbjct: 309 RDLTLNEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSREANQI 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P     PYT+
Sbjct: 369 DMPSYEGEERFYLHYNFPPFSTGEARPIRGTSRREVGHGNLAQRALKGMVP--EDCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481
           R+VSEI ES+GSSSMATVC  ++A+MDAGV + KPV+GIAMGL+ D D   + +LSDI G
Sbjct: 427 RVVSEILESNGSSSMATVCAGTMAMMDAGVQLKKPVSGIAMGLISDADSGKYAVLSDILG 486

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL+++++ +  
Sbjct: 487 DEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILDKITETIET 546

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
               + +  P +    IP + I  +IG GGKVI+ + ++T   + I++D     G V+I 
Sbjct: 547 PNADVKDHAPTMVSRRIPNEFIGALIGPGGKVIQEMQKETDTTIVINEDPVTEEGIVEIL 606

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLST 654
                 I+A    I ++   P+V  IY+ +V+K++DFGA V +      + L+H+S+L+ 
Sbjct: 607 GVGRKGIDAVMAKIDALLFKPQVGSIYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAW 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           ER    SDVV  GD   VK    D R +  K+S K +    
Sbjct: 667 ERTENVSDVVNMGDVFDVKYFGIDKRTRKEKVSRKAILPKP 707


>gi|163787538|ref|ZP_02181985.1| putative polyribonucleotide nucleotidyltransferase
           [Flavobacteriales bacterium ALC-1]
 gi|159877426|gb|EDP71483.1| putative polyribonucleotide nucleotidyltransferase
           [Flavobacteriales bacterium ALC-1]
          Length = 751

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/710 (40%), Positives = 429/710 (60%), Gaps = 19/710 (2%)

Query: 1   MFDVHTVE-IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M      E I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD  +F P
Sbjct: 1   MIPKTYKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-VNFLP 59

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M
Sbjct: 60  LTVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLM 119

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLF 177
            HD E  P  ++ +AASAA+ LS  PFE P+  A+V  ING++++NP   + ++  +D+ 
Sbjct: 120 SHDPEVMPDAMAGLAASAAIQLSDFPFECPISEARVGRINGEFIINPTFAQLEESDIDMM 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSK 235
           +  + D+V+MVE E +++SE+ + DAI F H   K    A  KLA+   K+ +      +
Sbjct: 180 IGASADSVMMVEGEMDEISEEEMADAIKFAHEHIKVQCAAQVKLAEAFGKKAVREYEPER 239

Query: 236 DFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           +   LE+++  M  + +   +     K+ R      +K+ + + FS E      G +   
Sbjct: 240 EDKDLEKKVHDMAYDKVYAIAKAGSAKHERSAAFQQIKEDIKATFSEEELEDYGGLVSDY 299

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +   +   +R + LD+ +R+DGR +  +R I  +V  L  THGSS+F RG+TQA+  VTL
Sbjct: 300 YRKAEKAAIRDLTLDEGLRLDGRKTTEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTL 359

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  D   +D  S      F +HYNF P  TGE   +   SRRE+GHG LA+RA+  ++P
Sbjct: 360 GTSRDANQIDMPSQEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMVP 419

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--D 472
                PYT+R+VSE+ ES+GSSSMATVC  ++A+MDAGV ++KPV+GIAMGL+ D D   
Sbjct: 420 --DDCPYTVRVVSEVLESNGSSSMATVCAGTMAMMDAGVQMTKPVSGIAMGLISDADSGK 477

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+V ALQQA+ GRLHIL
Sbjct: 478 YAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALQQARDGRLHIL 537

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-- 590
            +++  +++   ++ E  P +    IP + I  +IG GGKVI+ + ++T   + I++D  
Sbjct: 538 EKLTDTIAQPNAEVKEHAPTMITRRIPNEFIGALIGPGGKVIQEMQKETETTIVINEDPV 597

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDG 645
              G V+I       I+A    I SI   PEV  +Y+ +V+K++DFGA V +      + 
Sbjct: 598 TEEGIVEILGVGKTGIDAVMAKIDSILFKPEVGSVYEVKVIKMLDFGAVVEYMEAPGNEV 657

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           L+H+S+L+ ER    SDVV  GD   VK    D R +  K+S K +    
Sbjct: 658 LLHVSELAWERTENVSDVVNMGDVFDVKYFGLDKRTRKEKVSRKAILPKP 707


>gi|254821343|ref|ZP_05226344.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 744

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/726 (39%), Positives = 423/726 (58%), Gaps = 46/726 (6%)

Query: 1   MFDVHTVEIE---WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           MF+  T  I+   +  R ++ ETGR+A+Q+ GAV+A   +  ++L+     +S K+  DF
Sbjct: 1   MFEA-TATIDNGSFGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDF 59

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ 
Sbjct: 60  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVT 119

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD 175
           VM  D      V+++ AASA+  LSGLPF GP+ G +V  I+GQ+V  P +++ +    D
Sbjct: 120 VMSLDPNDLYDVLAINAASASTQLSGLPFSGPIGGVRVALIDGQWVAFPTVEQLERAVFD 179

Query: 176 LFVSGT---------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE-- 216
           + V+G            A++MVE EA +   ++V           +  G    KP I   
Sbjct: 180 MVVAGRIVGGGAAEKDIAIMMVEAEATENVIELVEGGAQAPTETVVAEGLEAAKPFIATL 239

Query: 217 --AISKLA----KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
             A  +LA    K   + P   D ++   +   ++ +  ++L  +  I  K  R  + D+
Sbjct: 240 CTAQEELAGAAAKPVGEFPTFPDYQE--DVYYSVASVATDELAKALTIGGKAERDARTDE 297

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           LK ++++  +  +    E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V 
Sbjct: 298 LKAEVLARLAETYEG-REKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVA 356

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           ++ R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R
Sbjct: 357 VVPRAHGSALFQRGETQILGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGR 416

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++
Sbjct: 417 VGSPKRREIGHGALAERALIPVLPGVEDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLN 476

Query: 451 AGVPISKPVAGIAMGLVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           AGVP+  PVAGIAMGLV D  +        F+ L+DI G ED  G MDFK AGT   +TA
Sbjct: 477 AGVPLKAPVAGIAMGLVSDDVEIDGRTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTA 536

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +Q+D K+ GI   ++  AL QAK  RL IL  M++ +     ++  + PRV  + +P D+
Sbjct: 537 LQLDTKLDGIPSQVLAGALGQAKDARLTILEVMAEAIDAP-DEMSPYAPRVTTIKVPVDK 595

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVN 620
           I  VIG  GKVI GI E+TGA+++I+DDGTV + ++     +AA + I +I    +P V 
Sbjct: 596 IGEVIGPKGKVINGITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVG 655

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + G VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D 
Sbjct: 656 ERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDK 715

Query: 680 RGKIKL 685
           RGKI L
Sbjct: 716 RGKISL 721


>gi|312133835|ref|YP_004001174.1| pnp [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773126|gb|ADQ02614.1| PnP [Bifidobacterium longum subsp. longum BBMN68]
          Length = 913

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/725 (40%), Positives = 429/725 (59%), Gaps = 39/725 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AK+  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKKTK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    + E +  ++
Sbjct: 258 EFQLFPEYTDELYARIDEIAHQDLDEALSIAEKLPRQDRIHEIKEHVREVLADEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+   ++P ++I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARATILEVINECIDGP-AEMSEFAPRIITTSVPVEKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I  I    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQ 692
                DGL+HISQ+      ER+    DV+KEGDTV V +   DDRGKI L++      +
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVDDRGKISLAIPGFEDQE 736

Query: 693 NTGKP 697
           N  +P
Sbjct: 737 NNARP 741


>gi|255325195|ref|ZP_05366301.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297760|gb|EET77071.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 748

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/717 (39%), Positives = 407/717 (56%), Gaps = 42/717 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG++ARQ+DG+V     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 28  DFGTRTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMY 87

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ VM  D E    V
Sbjct: 88  AAGKIPGSFFRREGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYYDV 147

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 148 VAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAGR 207

Query: 182 --------QDAVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKL 221
                     A++MVE  A     + + D        A+  G    KP I    EA + L
Sbjct: 208 IVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNGL 267

Query: 222 AKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           A   AKE             +   + +   + L     IP K  R    ++  +++    
Sbjct: 268 ADRAAKETQEFPLFPAYGDDVFAAVEKAATKKLEKLLTIPGKQERDDATNEYMEQVEEKL 327

Query: 280 SSEHSSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
             +     E +    I   +  +  ++VR  +L +  R+DGR    +RD+S +V L+ R 
Sbjct: 328 LDQFEDLEEADASKQIRGAYNALMKQIVRQKILSEGFRIDGRGVTDIRDLSVEVDLVPRA 387

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+P 
Sbjct: 388 HGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPFSTGETGRVGSPK 447

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP+
Sbjct: 448 RREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPL 507

Query: 456 SKPVAGIAMGLVKDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGLV       + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G
Sbjct: 508 KAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLDG 567

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL+QA+  R  IL  M++V+     ++    P++  + IP ++I  +IG  G
Sbjct: 568 IPSKVLAQALEQARDARSTILETMAEVIDTP-DEMSGLAPKITSVKIPVNKIGELIGPKG 626

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           K I  I E+TGA V+I+DDGTV +++++    +AA + + SI    +P+V + + G VVK
Sbjct: 627 KTINQITEETGADVSIEDDGTVYVSAATGEAADAAIDKVNSIANPQLPKVGERFLGTVVK 686

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            + FGAFV     RDGL+HIS L   ER+ K  DV+  GD V V++ D D+RGKI L
Sbjct: 687 TVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVINVGDKVQVEIADIDNRGKISL 743


>gi|305664512|ref|YP_003860799.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
           HTCC2170]
 gi|88708529|gb|EAR00765.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
           HTCC2170]
          Length = 737

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/701 (39%), Positives = 425/701 (60%), Gaps = 20/701 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   +   DF PLTV+Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYK-QADVDFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD    P 
Sbjct: 69  AAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPE 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS  PFE  +  A+V  +NG++V+NP   + ++  +++ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRAQLEESDIEMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           MVE E +++SE+ + DAI F H   K  I A  +LA+   K+   +   + +++ E++ +
Sbjct: 189 MVEGEMDEISEEEMADAIKFAHEAIKVQIAAQLRLAEAFGKK--EVREYETAEVNEDLQK 246

Query: 247 MIKEDLRVSCFIPEKY-----VRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            I +     C+   K       R     ++K+++ + F+ E        +   +   + +
Sbjct: 247 RIHDLAYDKCYAIAKQGTSKVERSNAFAEVKEEVKASFTEEEMEEFGHLVGGYYGKAEKE 306

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            VR + L + +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  D  
Sbjct: 307 AVRELTLSEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSRDAN 366

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D  S     +F +HYNF P  TGE   +   SRRE+GHG LA+RA+  ++P     PY
Sbjct: 367 KIDMPSHEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKGMVP--EDCPY 424

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           T+R+VSE+ ES+GSSSMATVC  ++A+MDAGV +++PV+GIAMGL+ DGD + +LSDI G
Sbjct: 425 TVRVVSEVLESNGSSSMATVCAGTMAMMDAGVQMTRPVSGIAMGLISDGDRYAVLSDILG 484

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+KI G+S  I+V AL+QA+ GRLHIL +++  ++ 
Sbjct: 485 DEDHLGDMDFKVTGTSEGITACQMDIKIKGLSYEILVNALKQAREGRLHILGKITDTIAT 544

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
               + E  P +    IP + I  +IG GGKVI+ + ++T   + I++D     G V+I 
Sbjct: 545 PAQNVKEHAPTMVTRRIPNEFIGALIGPGGKVIQEMQKETETTIVINEDPVTEEGIVEIL 604

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLST 654
                 I A    I S+   PEV  +Y+ +V+K++DFGA V +      + L+H+S+L+ 
Sbjct: 605 GVGSEGIAAVEAKIDSLMFKPEVGSVYEVKVIKMLDFGAVVEYMEAPGNEVLLHVSELAW 664

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKI-KLSMKVVDQNT 694
           ER    SDVV  GD   VK    D R +  K+S K +    
Sbjct: 665 ERTENVSDVVNMGDVFDVKYFGLDKRTRKDKVSRKALLPKP 705


>gi|256824776|ref|YP_003148736.1| polynucleotide phosphorylase/polyadenylase [Kytococcus sedentarius
           DSM 20547]
 gi|256688169|gb|ACV05971.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Kytococcus sedentarius DSM 20547]
          Length = 842

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/720 (38%), Positives = 413/720 (57%), Gaps = 48/720 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY------GETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +  R ++ ETGR+A+Q+ G+V A          T+VL+T    +  KD  DFFPLTV+ +
Sbjct: 18  YGTRTIRFETGRLAQQAAGSVAAYLVEDDIDDATMVLSTTTAGKEPKDHFDFFPLTVDVE 77

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER YA G+IPG + RRE RP  + IL  R+IDR +RP F+K  +NE QV++ V+ H  + 
Sbjct: 78  ERMYAAGRIPGSFFRREGRPGTDAILTCRLIDRPLRPTFTKGLRNEVQVVVTVLAHHPDH 137

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-- 181
              V+++ AASA+  +SGLPF GP+ G ++  I+GQ+V  P   +  + + D+ V+G   
Sbjct: 138 QYDVLAINAASASTQISGLPFSGPIGGVRISLIDGQWVAFPNFSDIARSTFDMVVAGRLT 197

Query: 182 ---QDAVLMVELEANQ-------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
                A++MVE E+ +              +E+VV   +       + + EA + L    
Sbjct: 198 DDGDVAIMMVEAESTESTWALVNDEGKTAPTEEVVSQGLEASKVFIRALCEAQASLHAAA 257

Query: 226 AKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
            KE    P  +D +D +   + +    +++   +  I  K  R  ++D++K  + +  + 
Sbjct: 258 GKEVQEFPTFLDFQDDAY--QAVESAAEKNTAEALTIAGKQEREGRLDEIKDSLKADLAG 315

Query: 282 EHSS------WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
                         E+ + F+ +Q K++R  +L   VR+DGR  + +R +SA+V  L R 
Sbjct: 316 ADEESGKPFAGRAKEVSAAFKALQKKLIRERILRDGVRIDGRGPKDIRALSAEVQALPRV 375

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS++F RG+TQ + V TL     EQ +D L+   R  +M +YNF P +TGE  R+G+P 
Sbjct: 376 HGSAIFERGETQIMGVTTLNMLRMEQQLDGLNPVTRKRYMHNYNFPPYSTGETGRVGSPK 435

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+
Sbjct: 436 RREIGHGALAERAILPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPL 495

Query: 456 SKPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGLV      G  +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 496 KAPVAGIAMGLVSAQVDGGTRYQALTDILGAEDAFGDMDFKVAGTKDFVTAIQLDTKLDG 555

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I    +  AL QA+  RLHIL+ MS+ +     ++    PRV  + +P D+I  VIG  G
Sbjct: 556 IPAEELSKALTQAREARLHILDVMSQAIDAP-DEMSPNAPRVIAVKVPVDKIGEVIGPKG 614

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           K+I  I E TGA ++I+DDGTV I ++     EAAR  + +I    +PE+ + + G VVK
Sbjct: 615 KMINQIQEDTGADISIEDDGTVYIGATDGPSAEAARSAVNAIANPQMPEIGERFLGTVVK 674

Query: 630 VMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              FGAF+     +DGL+HIS++      +R+    DV+  GD V V+L + D RGK+ L
Sbjct: 675 TTTFGAFISLLPGKDGLLHISEIRKLVGGKRIDAVEDVLNVGDKVQVELKEIDQRGKLSL 734


>gi|297191697|ref|ZP_06909095.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721446|gb|EDY65354.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 738

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/720 (39%), Positives = 418/720 (58%), Gaps = 38/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA +             +E+VV   +       K + +A S LA   AK    
Sbjct: 197 AIMMVEAEATEKTIELVKGGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTGE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E ++  +K +L  +  I  K  R  ++D +K+              
Sbjct: 257 FPVFLDYQD--DVLEALTAAVKSELAQALTIAGKQERETELDRIKELAAEKLLPAFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISGAYRALTKKLVRERIIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            +  D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SEQIDGETHYVALTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L + VV+   G  
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLAVGSKVQVEIAEIDSRGKLSL-IPVVEGEEGDE 731


>gi|213693120|ref|YP_002323706.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|257096682|sp|B7GNH2|PNP_BIFLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|213524581|gb|ACJ53328.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320459298|dbj|BAJ69919.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 914

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/713 (40%), Positives = 426/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
                 +   +L   + ++  +DL  +  I EK  R  +I ++K+ +    + E +  ++
Sbjct: 258 EFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVLADEFTDMDD 317

Query: 289 ----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQAK  R  IL  +++ +     ++ EF PR+   ++P ++I  VIG  GK+I  I E 
Sbjct: 558 LQQAKEARATILEVINECIDGP-AEMSEFAPRIITTSVPVEKIGEVIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      + A+ +I SI    VPE  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV++EGDTV V +   DDRGKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLREGDTVEVIVQGVDDRGKISLAI 729


>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
 gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
          Length = 853

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/750 (37%), Positives = 432/750 (57%), Gaps = 60/750 (8%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             +V+I    R + +ETG + RQ+ G+V  T GET++  +V  D    +  DF+PL+VNY
Sbjct: 16  PISVKIPVGDRHIMVETGHLGRQASGSVTVTDGETIIYTSVCLDDVPSEPSDFYPLSVNY 75

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  A G+  GG+ +RE R  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D  
Sbjct: 76  QERFSAAGRTSGGFFKREGRLKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGL 135

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQ 182
            SP  +++ AA  AL LS +P    + G +V  ++ ++++NP   + ++  LDL ++GT 
Sbjct: 136 HSPDSLAVTAAGIALALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESKLDLLLAGTD 195

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            A+ M+E   N L E+ +L+A+  G +  + +   ++ L K C K  ++   K    +L 
Sbjct: 196 SAIFMIEGYCNFLPEEKLLEAVQIGQDAVRTICNEVNALVKKCGKPKMLDAIKLPPPELY 255

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH------------------ 283
           + M ++  ++L     I  K  R K +  L++K++S  + +                   
Sbjct: 256 KHMEEIAGDELVKVLQIRNKVPRRKALQSLEEKVLSILTEKGYVSKDQSFGIPETVADLL 315

Query: 284 -------------------------------SSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
                                          S ++E ++  VF+++ +K +R  +++   
Sbjct: 316 EVEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLFSEVDVKLVFKEVTSKFLRRRIVEGGK 375

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR- 371
           R DGR  E +R I +  GLL R HGS+LF RG+TQ++ VVTLG ++  Q VD+L   +  
Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 435

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             F + Y+F P   GEV R+GAPSRREIGHG LA RA+ P+LP    FPYT+R+ S ITE
Sbjct: 436 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPSENDFPYTVRVESTITE 495

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDH 485
           S+GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V D ++F      +ILSDI+G ED 
Sbjct: 496 SNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDA 555

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAG + G+TA QMD+K+GGI+  +M  AL QA+ GR HIL EM K       +
Sbjct: 556 SGDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRTALLQARDGRKHILAEMLKCSPSPSKR 615

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIE 604
           L ++ P + IM + P+++  +IG GGK ++ I+E+TG + ++  DDG VKI +  L+ IE
Sbjct: 616 LSKYAPLIHIMKVNPEKVNIIIGSGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLSSIE 675

Query: 605 AAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            +  +I  +T VP V  IYK   +K V  +G FV      +GL HIS+LS+  + K  D 
Sbjct: 676 KSISIISQLTMVPAVGDIYKNCEIKSVAPYGVFVEIAPGHEGLCHISELSSNWLPKAEDA 735

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            K GD V VKL++ + +G+++LS K +   
Sbjct: 736 FKVGDRVDVKLIEVNGKGQLRLSRKALLPE 765


>gi|297626619|ref|YP_003688382.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) (PNPase) (Guanosine pentaphosphate
           synthetase) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922384|emb|CBL56956.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) (Guanosine pentaphosphate
           synthetase) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 736

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/723 (37%), Positives = 427/723 (59%), Gaps = 39/723 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++    ++ ETG +A+Q+DGA      G++++L+T    +  ++  DFFPLTV+ +E+ Y
Sbjct: 17  KFGKHIMRFETGLLAQQADGAAAVYLDGDSMLLSTTTAQKKPREAIDFFPLTVDVEEKMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVG+IPG + RRE RP+EN IL  R+IDR +RP F K  +NE QV++ V+  + +    +
Sbjct: 77  AVGRIPGSFFRREGRPSENAILTCRLIDRPLRPAFKKGLRNEVQVVVTVLALNPQVEYDM 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V+M AAS +  +SGLPF GP+   ++  I  Q+V  P +D+++  +  + V+G       
Sbjct: 137 VAMNAASMSTQISGLPFSGPIGAVRISLIGDQWVCLPTVDQEKDATFSMVVAGRVLPDGD 196

Query: 183 DAVLMVELEANQLSEDVV--------LDAIIFGHNECKPVI----EAISKLAKMCAKE-- 228
            A++MVE    + + ++V         + +  G +  KP I    +A ++LA    KE  
Sbjct: 197 IAIMMVEAGGTEATWELVKGGRTAPTEEVVAAGLDAAKPFIKVLCDAQAELAAQVNKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF-SSEHSS 285
             P+  + +D   + + + ++  + L     +  K  R +   DLK ++V      E   
Sbjct: 257 DFPVFKEYED--DVWDRVKELGYDKLDKIEQVAAKLDRQEAESDLKHEIVGQMVGEEDFE 314

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             EGEI   F+ ++ K+VR  +L K VR+DGR  + +R +S++VG++ R HGS LF RG+
Sbjct: 315 GREGEIAGAFKALEKKIVRDRVLSKGVRIDGRGPKDIRALSSEVGVVPRVHGSGLFQRGE 374

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + + TL   + EQ +D+LS      +M  Y   P +TGE  R+G+P RRE+GHG LA
Sbjct: 375 TQVLGITTLNMLDMEQKLDTLSSVHTKRYMHQYEMPPYSTGETGRVGSPKRREVGHGALA 434

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 435 SRAIVPVLPTREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 494

Query: 466 LVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           L+ + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  A
Sbjct: 495 LMSETDESGKTSYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLNGIPADVLAAA 554

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA+  R  IL+ +   +     ++  + PR+  + IP D+I  VIG  GKVI  I + 
Sbjct: 555 LLQARDARHAILDVIHDAIDSP-DEMSPYAPRIITVHIPTDKIGEVIGPKGKVINQIQDD 613

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA ++I++DGT+ + + +    EAAR MI +I +  +PE  + Y G VVK+  FGAF+ 
Sbjct: 614 TGANISIEEDGTIYVGADNGDAAEAARTMINAIANPTMPERGERYLGTVVKLTSFGAFIS 673

Query: 639 FCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
               +DGL+HIS+L      +RV    DV+  G  + V++ D DDRGK+ L + V+D++ 
Sbjct: 674 LLPGKDGLLHISKLRALNDGKRVENVEDVLSVGQKLQVEISDIDDRGKLSL-VPVLDEDD 732

Query: 695 GKP 697
              
Sbjct: 733 SDD 735


>gi|308235438|ref|ZP_07666175.1| polynucleotide phosphorylase/polyadenylase [Gardnerella vaginalis
           ATCC 14018]
 gi|311114219|ref|YP_003985440.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           ATCC 14019]
 gi|310945713|gb|ADP38417.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           ATCC 14019]
          Length = 914

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/713 (40%), Positives = 423/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+    L  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + +A ++L ++ AKE  
Sbjct: 198 AIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKVICDAQNELKRIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----S 284
                 +   +L   + ++   DL  +  I EK  R  +I ++K+ + +  + E      
Sbjct: 258 EFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDMDD 317

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 EEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ VD+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL  +++ +     ++  F PR+    IP D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAHEARATILEVINECIDCP-AEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      + A+E+I SI +  +P+  + + G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVYISSEGGEAAQKAKEIIDSIANPRIPKAGETFTGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      ER+    DV+KEGD V V +   D+RGKI L++
Sbjct: 677 LTPGSDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAI 729


>gi|84496941|ref|ZP_00995795.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
           HTCC2649]
 gi|84383709|gb|EAP99590.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
           HTCC2649]
          Length = 807

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/725 (38%), Positives = 426/725 (58%), Gaps = 43/725 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV A    +T++L+T    +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAGGAVSAYLDEDTMLLSTTTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I+V+  + ++   V+
Sbjct: 78  AGKIPGSFFRREGRPSTEAILTCRLIDRPLRPTFKKGLRNEVQVVISVLALNPDAQYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG------TQ 182
           ++ AASA+  +SGLPF GP+   +V  IN Q+V  P+  + ++ + D+ V+G      + 
Sbjct: 138 AINAASASTQISGLPFSGPIGAVRVSLINDQWVAFPQFSDIERSTFDMVVAGRIVDDGSD 197

Query: 183 DAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------KMC 225
            A++MVE EA + + ++V          D +  G    K  I+ + +          K  
Sbjct: 198 VAIMMVEAEATEQTWNLVKNEGKTAPTEDVVAQGLEAAKGFIKVLCEAQADLAAKAAKPI 257

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            + PI +D +D +     +   +  D   +  I  K  R  ++D++K  M +  +     
Sbjct: 258 QEFPIFLDYEDDAY--AAVEAKVGSDAAAALQIAGKQEREDRLDEIKDSMKAALAGTDGE 315

Query: 286 -----WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
                  E E+ + ++ +Q K++R  +L  KVR+DGR    +R +SA+V +L R HGS++
Sbjct: 316 SGSFAGREKELSAAYKSVQKKLIRERILKDKVRIDGRGLADIRALSAEVEVLPRVHGSAI 375

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIG
Sbjct: 376 FERGETQIMGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIG 435

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 436 HGALAERALMPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVA 495

Query: 461 GIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGLV    D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   +
Sbjct: 496 GIAMGLVSAEVDGVTQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPAEV 555

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RLHIL+ M++ +     ++  F PRV  + +P D+I  VIG  GK+I  
Sbjct: 556 LGSALTQAREARLHILDVMNEAIDVP-DEMSPFAPRVISVQVPVDKIGEVIGPKGKMINQ 614

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFG 634
           I ++TGA+++I+DDGT+ I ++     EAAR  I +I    +PE+ + + G VVK   FG
Sbjct: 615 IQDETGAQISIEDDGTIYIGATDGPSAEAARAAINAIANPQMPEIGERFLGTVVKTTTFG 674

Query: 635 AFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AF+     +DGL+HIS++      +R+    DV+  G  V V+L + D RGK+ L   + 
Sbjct: 675 AFISLLPGKDGLLHISEVRKLVGGKRIDAVEDVLAVGQKVQVELKEIDPRGKLSLGAVLA 734

Query: 691 DQNTG 695
           D ++ 
Sbjct: 735 DDDSA 739


>gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
 gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
          Length = 705

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/690 (41%), Positives = 439/690 (63%), Gaps = 12/690 (1%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLKDGQDFFPLTVNYQER 66
             +       +ETG +ARQS  +++   G T VL +VV      K   +FFPL VNYQER
Sbjct: 12  TFQLGKNDCVIETGSLARQSTSSLIIHMGGTSVLISVVEQTEEKKQESNFFPLIVNYQER 71

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +Y++G+IPG + RRE R  ENEIL SR+IDRS+RP F + ++NE Q+I  V+  + + +P
Sbjct: 72  SYSIGRIPGSFFRREGRSGENEILTSRLIDRSLRPAFPEQFRNEIQIIATVVSVNPKINP 131

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            ++S++ ASAAL +S +PF GP+   ++ YI G+Y+LNP  ++  +  LDL VSGT+D +
Sbjct: 132 DILSIIGASAALSISHIPFHGPIGSVRIGYIGGRYILNPSYEDLKESELDLIVSGTEDKI 191

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEM 244
           LMVE  ++ L ED++L+AI F     K +I+ I+KL++    + +    ++    L+  +
Sbjct: 192 LMVEARSSLLKEDIILEAIDFSKKYQKTIIDNINKLSEKIGSKKVFQKKEETDFHLKNYI 251

Query: 245 SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            + +++DLR +  IP+K  R  +I ++K K+ S  S     +N  +   +F  I+ ++VR
Sbjct: 252 LEKVEKDLRDAYLIPDKKTRLSRIQEIKDKIFSEASLNLEVFNSFQANEIFFGIEKEIVR 311

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           + +L++ +R+DGR    +R I  +VG+L RTHGSSLF RG+TQ +V+VTLG   D Q  D
Sbjct: 312 SRILNEGIRIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRD 371

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            + G + + F++HYNFLP + GE+  +G P RREIGHG L +R +  V+P  + F YT+R
Sbjct: 372 EIVGEKLDHFILHYNFLPYSVGEIGLVGVPKRREIGHGNLVKRGMIAVMPNFSNFSYTIR 431

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GSSSMA+ CG+SLA+MDAG+PI   +AGI++GL+K+ ++F+ILSDI GDED
Sbjct: 432 VVSEVIESNGSSSMASACGTSLAMMDAGIPIKSAIAGISIGLIKEKENFVILSDILGDED 491

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           H G MDFKV G + GI+A+QMD+KI GI + I+  AL QAK  R  IL +M   +S  R 
Sbjct: 492 HFGDMDFKVMGNEEGISALQMDLKINGIEDEILRFALFQAKEARCKILKKMKNAISNPRK 551

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F PR+  + I P +I+++IG GG  IR + E+T + ++I+D G VKI+S     I+
Sbjct: 552 SISNFAPRIRKIYIEPHKIKDLIGKGGSTIRSLTEETNSVIDIEDTGEVKISSMDELSIK 611

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-GARDGLVHIS--------QLSTE 655
                I+ IT   E+  +YK +V++++DFG FV      ++GLV +         + S +
Sbjct: 612 KTILRIKEITSEVEIGCVYKAKVIRIVDFGLFVSILSNKKEGLVRMQTNKPLKDIRFSNK 671

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +V      ++ G  + VK +D D +G+I+ 
Sbjct: 672 KVTSRKSQIQIGQILSVKAVDIDRQGRIQF 701


>gi|283782720|ref|YP_003373474.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|298253113|ref|ZP_06976905.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           5-1]
 gi|283441010|gb|ADB13476.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|297532508|gb|EFH71394.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           5-1]
          Length = 926

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/726 (40%), Positives = 427/726 (58%), Gaps = 38/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+    L  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E VV   +       K + +A ++L ++ AKE  
Sbjct: 198 AIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQNELKRIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----S 284
                 +   +L   + ++   DL  +  I EK  R  +I ++K+ + +  + E      
Sbjct: 258 EFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDMDE 317

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ VD+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPGREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL  +++ +     ++  F PR+    IP D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAHEARATILEVINECIDCP-AEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I SI +  VP+  + + G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVYISSEGGEAAEKAKGIIDSIANPRVPKAGETFTGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGD V V +   D+RGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFEDQE 736

Query: 694 TGKPIV 699
           +  P V
Sbjct: 737 SSAPAV 742


>gi|328885433|emb|CCA58672.1| Polyribonucleotide nucleotidyltransferase [Streptomyces venezuelae
           ATCC 10712]
          Length = 739

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/709 (39%), Positives = 413/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ +L  R+IDR +RP F K  +NE Q++  +M  + +    V
Sbjct: 76  AAGKIPGSFFRREGRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AASA+ +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G       
Sbjct: 136 VAINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA +             +E++V   +       K + +A S LA   AK   
Sbjct: 196 VAIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLCKAQSDLAAKAAKPTG 255

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+ +D +D   + E ++  +K DL  +  I  K  R  ++D +K+             
Sbjct: 256 EFPVFLDYQD--DVLEALTAAVKGDLAKALTIAGKQERETELDRIKELAAEKLLPAFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISGAYRALTKKLVRERIIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL
Sbjct: 433 RALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           + +  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISEEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 AEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLL 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLAIGSKVQVEIAEIDQRGKLSL 720


>gi|124006215|ref|ZP_01691050.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
           23134]
 gi|123988139|gb|EAY27797.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
           23134]
          Length = 712

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/709 (41%), Positives = 438/709 (61%), Gaps = 18/709 (2%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            V T EI  A GR + LETG++ARQ++G+V+ T G+T++LATVV  +  KD  DF PL+V
Sbjct: 4   KVITKEIVLADGRKITLETGKLARQANGSVVVTMGQTMLLATVVSQKEAKDDVDFLPLSV 63

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           ++QER  A GK+PGG+L+RE R +  EIL  R++DR++RPLF   Y  +TQ+ I ++  D
Sbjct: 64  DFQERFAAAGKVPGGFLKREGRLSNYEILTCRLVDRAMRPLFPGDYHADTQINIFLISSD 123

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSG 180
            E     ++ +AAS+A+ +S +PF GP    +V  +NG++V+NP ++  ++  LD+ ++ 
Sbjct: 124 PEVPADALAALAASSAVSVSDIPFNGPTAEVRVARVNGEFVINPSVEAIEEADLDIMLAA 183

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           T D+VLMVE E  ++SE  +LDAI FGH   K + +A  +L              D  K 
Sbjct: 184 TLDSVLMVEGEMQEVSEQDMLDAIRFGHEVIKTLCQAQKELEAEAG--ATEKREYDHEKH 241

Query: 241 EEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + E+ Q + ++L    +      I  K  R +  + +K + +     +H   +   +   
Sbjct: 242 DPELEQRLYDELYEKAYKVAQQQISNKSERSEAFNVIKDEFIDSLPEDH-EVDLYLVKQY 300

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +  I+ K  R + L  + R+DGRD   +R I  +V  L  THGS+LF RG+TQ++  +TL
Sbjct: 301 YGKIKKKACRDLALKDRKRIDGRDFSEIRPIWGEVNYLPATHGSALFTRGETQSLTTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT+ DE ++D+ +      FM+HYNF   +TGEV      SRREIGHG LA RA+  +LP
Sbjct: 361 GTKLDELFIDNATFKGTQKFMLHYNFPGFSTGEVKPNRGASRREIGHGNLAYRALKGMLP 420

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-- 472
           +    PYT+RIVS+I ES+GSSSMATVC  ++ALMD G+ I  PV+GIAMGL+ D  D  
Sbjct: 421 KDEDNPYTIRIVSDIMESNGSSSMATVCAGTMALMDGGISIKAPVSGIAMGLISDESDPE 480

Query: 473 -FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S +I+  AL QA+ GRLHI
Sbjct: 481 NYAVLSDILGDEDHLGDMDFKVTGTRDGITACQMDIKMEGLSYDILTKALAQAREGRLHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L+++ +++  +   L    PR   + I  D I  VIG GGK+++ I +++GA V I++  
Sbjct: 541 LDKIEEIIPSTNSDLKPHAPRSTTVVIEKDMIGAVIGPGGKIVQLIQKESGATVVIEEKD 600

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V I ++    ++ A EM++ I  VP V ++Y+G+V  +M FGAFV F   ++GL+H
Sbjct: 601 EHGHVNIFANDRESMDKAHEMVKQIIAVPTVGEVYEGKVKSIMPFGAFVEFLPGKEGLLH 660

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           IS++  ER+ K   V++ G+ + VKL+D D R GK +LS K +     K
Sbjct: 661 ISEIKWERIEKMDGVLESGEEITVKLIDVDKRSGKYRLSRKALLPRPAK 709


>gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis
           thaliana]
 gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 991

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/706 (38%), Positives = 418/706 (59%), Gaps = 14/706 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E   R +  ETG+IAR ++G+V+    ET VL+TV   ++     DF PLTV+
Sbjct: 51  ESFKEEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPR-DFLPLTVD 109

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q++ +V+  D 
Sbjct: 110 YQEKQYAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSSDG 169

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
           +  P +++  A+SAALMLS +P+ GP+   ++  I GQ+V+NP +DE   S L+L  + T
Sbjct: 170 KQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACT 229

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           +D  +M+++++ ++SE  +  A+   H E    ++   +LA+   K+         S K 
Sbjct: 230 RDKTMMIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSDKT 289

Query: 241 EEEMSQMIKEDLRVSCFIP--EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            E+++ +    +      P   K+ R + +D++ K +   F  E    +   +    + +
Sbjct: 290 LEKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTV 349

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           + KVVR+ M+    R+DGR  + VR I  +   L   HGS+LF RGDTQ +  VTLG   
Sbjct: 350 RKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPA 409

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + Q +DSL G  +  FM+HY+F P  T EV + G  +RRE+GHG LA +A+  VLP    
Sbjct: 410 EAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEA 469

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------- 471
           FPYT+RI SE+  SDGS+SMA+VCG S+ALMDAG+P+   VAG+++GL+ D D       
Sbjct: 470 FPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIK 529

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+ I++DI G EDHLG MDFK+AGT  G+TA+Q+D+K  GI  +I+  +L+ A+  RL I
Sbjct: 530 DYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARLQI 589

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L+ M + ++  R Q G ++PR+  +    D +R +IG  G + R I  +TGA+++I D+G
Sbjct: 590 LDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSI-DNG 648

Query: 592 TVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           T+ I + +   +E A+E +  I      V  +YKG V  + ++GAFV F G + GL+H+S
Sbjct: 649 TLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLHMS 708

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           +LS E V+K SDV+  G  +    ++ D RG IKLS K +     +
Sbjct: 709 ELSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPKPKR 754


>gi|294790571|ref|ZP_06755729.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
           F0304]
 gi|294458468|gb|EFG26821.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
           F0304]
          Length = 953

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/714 (40%), Positives = 425/714 (59%), Gaps = 37/714 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ Y
Sbjct: 17  DFGKRVLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENFDFFPLTVDVEEKMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  V+    + S  +
Sbjct: 77  AAGKIPGSFFRREGRPSNEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSISPDDSYDM 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           ++M AASA+ M+SGLPFEGPV G ++  I+ Q+V  PR  E +    +L V+G       
Sbjct: 137 IAMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPRWSERERAVFELVVAGRVLDNGD 196

Query: 183 DAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVI----EAISKLAKMCAKEP 229
            A+ M+E  A + +  ++ D          +  G    KP I    EA ++L K  AKE 
Sbjct: 197 VAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKTICEAQNELKKAAAKET 256

Query: 230 IVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
                  +    L   + Q+   DL  +  I EK  R  +I  +K+ +V   ++E +  +
Sbjct: 257 KDFPLFPEYTEDLYNRIDQIAHSDLNDALSIAEKLPRQDRIAQIKQGVVDTLAAEFTDMD 316

Query: 288 ----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E EI + F+++Q ++VRT +L +  R+DGR    +R +SA+V ++ R HGS+LF R
Sbjct: 317 DAEKEKEIGNAFKELQRQIVRTRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGSALFQR 376

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ  D+LSG     +M +Y   P +TGE  R+G+P RRE+GHG 
Sbjct: 377 GETQILGVTTLNMLKMEQTTDALSGPSTKRYMHNYEMPPYSTGETGRVGSPKRREVGHGA 436

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+  PVAGIA
Sbjct: 437 LAERALIPVLPSREKFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIA 496

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV    +    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  
Sbjct: 497 MGLVSGEVNGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAA 556

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA   R  IL  +++ +     ++  + PR+  M +P D+I  +IG  GK+I  I E
Sbjct: 557 ALRQAYEARTTILEVINECIDG-VNEMSPYAPRIISMTVPVDKIGEIIGPKGKMINEIQE 615

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
           +TGA+V I+DDGTV IAS      E AR++I  I    +PE  + Y+G+VVK   FGAFV
Sbjct: 616 KTGAEVTIEDDGTVYIASEGGNAAEEARKLIDQIANPHIPEEGEKYQGKVVKTTSFGAFV 675

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +     DGL+HISQ+      +R+    DV++EGDTV V +   DD+GKI L++
Sbjct: 676 NLTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 729


>gi|307331543|ref|ZP_07610655.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces violaceusniger Tu
           4113]
 gi|306882814|gb|EFN13888.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces violaceusniger Tu
           4113]
          Length = 752

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/709 (39%), Positives = 414/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTVSKNPKDQLDFFPLTVDVEERMY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    V
Sbjct: 76  AAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E ++   D+ V+G       
Sbjct: 136 VAINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHSELEEAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAK--------MCA 226
            A++MVE EA Q +  +V D         +  G    KP I+ + K             A
Sbjct: 196 VAIMMVEAEATQQTIQLVKDGAEAPTEEIVAAGLEASKPFIKVLCKAQADLAAKAAKPTA 255

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           + PI +D +D   + E ++  ++++L  +  I  K  R  ++D +K         +    
Sbjct: 256 EFPIFLDFQD--DILEALTAAVRDELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISAAYRALTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL
Sbjct: 433 RALLPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I +      EAAR  I  I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 ADITIEDDGTIYIGAVDGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLL 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+K G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL 720


>gi|302558058|ref|ZP_07310400.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           griseoflavus Tu4000]
 gi|302475676|gb|EFL38769.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           griseoflavus Tu4000]
          Length = 747

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/708 (39%), Positives = 411/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  INGQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           A++MVE EA + +        E    + +  G    KP I+ + +          K   +
Sbjct: 197 AIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVLCRAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDYQD--DVLEALAGAVKPELASALTIAGKQEREAELDRVKALAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              +     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARTTINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGHKVQVEIAEIDSRGKLSL 720


>gi|297243010|ref|ZP_06926948.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           AMD]
 gi|296889221|gb|EFH27955.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           AMD]
          Length = 920

 Score =  663 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/726 (40%), Positives = 427/726 (58%), Gaps = 38/726 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + +++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+    L  R+IDR +RPLF    +NE QV+  ++  + + +  V+
Sbjct: 78  AGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ M+SGLPFEGPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E VV   +       K + +A ++L ++ AKE  
Sbjct: 198 AIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKVICDAQNELKRIAAKETK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----S 284
                 +   +L   + ++   DL  +  I EK  R  +I ++K+ + +  + E      
Sbjct: 258 EFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDMDE 317

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDVVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ VD+LSG Q   +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAM
Sbjct: 438 AEKALVPVLPGREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL  +++ +     ++  F PR+    IP D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAHEARTTILEVINECIDCP-AEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQEE 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S      E A+ +I SI +  VP+  + + G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVYISSEGGEAAEKAKGIIDSIANPRVPKAGETFTGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGD V V +   D+RGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFEDQE 736

Query: 694 TGKPIV 699
           +  P V
Sbjct: 737 SSAPAV 742


>gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
 gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
          Length = 793

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/703 (39%), Positives = 431/703 (61%), Gaps = 15/703 (2%)

Query: 4   VHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
             +V  +   GR + +ETG++ARQ+DGAV    G  ++LATVV  ++ K GQ FFPLTV+
Sbjct: 5   PISVNFDIGDGRIVTIETGKLARQADGAVTVRLGNCILLATVVAAKTPKPGQSFFPLTVD 64

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+  + G+IPG + +RE + ++ E+LISR+IDR++RPLF   Y  E QV+++++  D 
Sbjct: 65  YQEKFASAGRIPGSFFKREGKLSDYEVLISRLIDRALRPLFPDDYFCEVQVLVSLISSDP 124

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGT 181
           E  P  ++ +AASAAL +S +P +  +   +V  I+GQ V+NP     ++  +D  +  T
Sbjct: 125 EVMPDALACLAASAALAVSDVPIQEIISEVRVSRIDGQLVINPNRTPLEKADMDFIIGAT 184

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC---AKEPIVIDSKDFS 238
           +  ++MVE E+ + SE+ ++ AI   H   +  ++A  +L +      K        +  
Sbjct: 185 EKNIMMVEGESKECSEEDIIKAIEVAHEAIRVQVKAQEELREKAGVSGKREFEKPYAN-E 243

Query: 239 KLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           +L+ +++   +E  L V+     K+ R    D + +++V +   E    +   +   F  
Sbjct: 244 ELKAKIAAFAQERILAVAKSASAKHDRADAFDKISEELVEHLG-ELPEEDAPLVGKYFHS 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +V+R ++LD+ VR+DGR  + VR ++ +  +L   HGS+LF RG+TQ++  VTLGT 
Sbjct: 303 LEKEVIRNMILDQSVRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTP 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           +DE   +S + ++   F++HYNF P +TGEV  M  P RRE+GHG LA R++  ++P + 
Sbjct: 363 DDELLSESAATSKYTKFILHYNFPPFSTGEVKPMRGPGRREVGHGNLAMRSLKQMMPGSE 422

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--DGDDFII 475
            + YT+R+VS+I ES+GSSSMATVC  SLALMDAGVP+ K V+G+AMGL+       + +
Sbjct: 423 -YAYTVRVVSDILESNGSSSMATVCAGSLALMDAGVPLPKHVSGVAMGLISRASDGKWAV 481

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI GDEDHLG MDFKV GT  GI  +QMD+K+ G+S ++M  AL+QA+ GRLHI++ M
Sbjct: 482 LTDILGDEDHLGDMDFKVTGTRDGICGIQMDIKVDGLSMDVMRKALEQARSGRLHIIDAM 541

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DDGT 592
              +  +R +     PR+E + I  + I  VIG GGKVI+ I  +TG  +NI+   + G 
Sbjct: 542 YTAMPAARPEPKPHAPRMEKLIIDREFIGAVIGPGGKVIQEIQRETGTNINIEEVGETGE 601

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I S+    +  A E I+ I  VPE+ + Y+  V  VM +GAFV F   + GL+HIS++
Sbjct: 602 VSIFSAQKEGLMKALEWIKGIVAVPEIGETYESTVKSVMPYGAFVEFLPGKQGLLHISEV 661

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           S +R+     V+ EG+ V VKL+  D + GK KLS +V+    
Sbjct: 662 SWKRLETMEGVLTEGEKVKVKLVGTDPKTGKFKLSRRVLMPKP 704


>gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
 gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
          Length = 745

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/709 (41%), Positives = 446/709 (62%), Gaps = 18/709 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           + H  +IE+   R L LETGRIA+Q+DG+V+A  G+T+VL+T     S+ +  +FFPLTV
Sbjct: 37  EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF   + ++  V+  V+   
Sbjct: 96  DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +    V++ V +SAALMLSG PF GP    +V  ++G Y++NP + + ++  +DL V+G
Sbjct: 156 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 215

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            +DA++MVE EA ++SE+ +++A+   H   + + E   +L +   +        D  ++
Sbjct: 216 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQAGEPDPFEWEAD--RV 273

Query: 241 EEEMSQMIKEDL--RVSCFIPE---KYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EI 291
            E++ Q ++E+   +V+  I     K      I DLK + V     + S   EG    +I
Sbjct: 274 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 333

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                +++   +R +++++  R+DGRD   VRD+  +VG L R HGS++F RG+TQ +  
Sbjct: 334 RDAIGEVEKDEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 393

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT +D Q VD +       F +HY F P + GE S +  P RREIGH  LA RA+ P
Sbjct: 394 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 453

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+   FPYT+RI +++ ES+GSSSMA+VC  SLALMDAGVPI KPVAGIAMGLV++ D
Sbjct: 454 VIPEQDAFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 513

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G EDHLG MDFK+ GT  GITA QMDMKI G+S ++M+ AL+Q++  R HI
Sbjct: 514 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 573

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L+ M + ++E R +L    PR+  + I PD+I  VIG GGKV++ + E+T  ++ ++++ 
Sbjct: 574 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 633

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V IA+++  + EAA E I+ I  VPE  + Y G V  + DFGAFV     + GL+H
Sbjct: 634 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 693

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGK 696
           +S++  + V    D ++ GD V V LL+  D GK++L+ K  V +  G+
Sbjct: 694 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRKPFVSEENGE 742


>gi|261338333|ref|ZP_05966217.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
           DSM 20093]
 gi|270277006|gb|EFA22860.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
           DSM 20093]
          Length = 895

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/722 (40%), Positives = 428/722 (59%), Gaps = 38/722 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A   + T++L+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGTRTLRFETGRLAQQADGAVAAYLDDDTMILSTTTAGSSPKENYDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + +  VV
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPDDAYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+ ++SGLPF GPV G ++  I+GQ+V  PR  E +    ++ V+G        
Sbjct: 138 ALNAASASTLISGLPFGGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVVDNGDV 197

Query: 184 AVLMVELEANQLS-------------EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           A+ M+E  A + +             E+VV   +       K + EA  +L K+ AKE  
Sbjct: 198 AIAMIEAGAGKNAWKLIYDEGHMKPDEEVVAGGLEAAKPFIKVICEAQDELKKLAAKETR 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----S 284
                 +    L   + ++   DL  +  I EK  R ++I ++K+K+    S E      
Sbjct: 258 EFQLFPEYTDDLYNRIDEIAHADLDEALSIAEKLPRQERIHEIKEKVREALSLEFTDMDE 317

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  E E+ + F+++Q ++VR  +L +  R+DGR    +R +SA+VG++ R HGS+LF RG
Sbjct: 318 AEKEKEVGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVGIVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ +D+LSG     +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQQIDALSGPTSKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A +AI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L+DAGVP+  PVAGIAM
Sbjct: 438 AEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLDAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++  A
Sbjct: 498 GLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADVLAGA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L+QA   R  IL  +++ +     ++ E  PR+    +P D+I  +IG  GK+I  I E 
Sbjct: 558 LKQAHEARTTILEVINECIDGP-AEMNETAPRIITTVVPVDKIGEIIGPKGKMINQIQED 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I+S   A  EAA+++I  I    VP+  + Y G+VVK   FGAFV+
Sbjct: 617 TGAEIAIEDDGTVFISSEGGAAAEAAKKIIDEIANPHVPQAGETYTGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQN 693
                DGL+HISQ+      ER+    DV+KEGD V V + + DDRGKI L++    DQ 
Sbjct: 677 LTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDEVEVVVQNVDDRGKISLAIPGFEDQE 736

Query: 694 TG 695
           +G
Sbjct: 737 SG 738


>gi|325285569|ref|YP_004261359.1| polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
           7489]
 gi|324321023|gb|ADY28488.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
           7489]
          Length = 747

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/701 (38%), Positives = 426/701 (60%), Gaps = 18/701 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G  ++L T+V +   +   DF PLTV+Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVQSGNCMLLCTLVSNYK-QSDVDFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            + G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD    P 
Sbjct: 69  ASAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMSHDENVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS +PFE P+  A+V  ING++++NP   + ++  +D+ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDVPFETPISEARVGRINGEFIINPTRAQLEESDIDMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFSKLEEEM 244
           MVE E  ++SE+ + +AI F H   K    A  KLA+   K+        ++   L +++
Sbjct: 189 MVEGEMLEISEEEMAEAIKFAHEAIKVQCAAQVKLAEAFGKKETREYEPEREDEDLAKKI 248

Query: 245 SQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             M  + +   +     K+ R     ++K+++ + FS E  +     +   +   +   +
Sbjct: 249 YDMAYDKVYAVAKAGSSKHERSTAFGEIKEEIKATFSEEELADYGDLVSKYYAKAEKAAI 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + LD+ +R+DGR ++ +R I  +V  L  THGSS+F RG+TQA+  VTLGT  +   +
Sbjct: 309 RNLTLDEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQI 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  ++P  A  PYT+
Sbjct: 369 DMPSYEGEERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMVP--ADCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481
           R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ D +   + +LSDI G
Sbjct: 427 RVVSEVLESNGSSSMATVCAGTMALMDAGVQLIKPVSGIAMGLISDAETGKYAVLSDILG 486

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT+ GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL +++  +S 
Sbjct: 487 DEDHLGDMDFKVTGTEDGITACQMDIKVKGLSYEILVNALKQAREGRLHILGKLTDTISA 546

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
               +   +P++    IP + I  +IG GGKVI+ + ++TG  + I++D     G V+I 
Sbjct: 547 PASDVKSHSPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPETEEGVVEIL 606

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLST 654
            +    I++    I S+   PE   +Y+ +V+K++DFGA V +      + L+H+S+L+ 
Sbjct: 607 GTGQDGIDSVLAKIDSLLFKPEKGSVYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAW 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           ER    +DVV  GD   VK    D R +  K+S K +    
Sbjct: 667 ERTENVTDVVNMGDVFDVKYFGVDPRTRKEKVSRKALLPKP 707


>gi|227833344|ref|YP_002835051.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184330|ref|ZP_06043751.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|257096677|sp|C3PH09|PNP_CORA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|227454360|gb|ACP33113.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 756

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/719 (39%), Positives = 415/719 (57%), Gaps = 46/719 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V      +T++L+T       ++G DFFPLTV+ +ER Y
Sbjct: 35  DFGTRTIRFETGQLARQAGGSVTTYLDEDTMLLSTTTASNQPREGFDFFPLTVDVEERMY 94

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+  D E    V
Sbjct: 95  AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMDPEEYYDV 154

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASA+  LSGLP  GPV G ++  I       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 155 VAINGASASTQLSGLPVSGPVGGVRMALIADDKHPKGQWVAFPNNEQHERALFEMVVAGR 214

Query: 182 --------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKL 221
                     A++MVE  A     + + +         +  G    KP I    EA + L
Sbjct: 215 IVKKGRKDDVAIMMVEAGAGVNVAERIKEGAPAPQESTVAEGLEAAKPFIKSLCEAQAGL 274

Query: 222 AKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
           A+  AKE    P+     D   +   + +   + L     IP K  R    ++  +++ +
Sbjct: 275 AERAAKETQEFPLFPPYGD--DVYAAVEKAASKKLEKLLTIPGKQDRDDATNEYMEQVEA 332

Query: 278 YFSSEHSSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
               +    +E +    I + F  +   +VRT +L +  R+DGR    +RD+  +V L+ 
Sbjct: 333 KLIEDFDDLDEADASKQIRNAFNAVMKDIVRTKILTEGFRIDGRGVTDIRDLGVEVDLIP 392

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393
           R HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+
Sbjct: 393 RAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPYSTGETGRVGS 452

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
           P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGV
Sbjct: 453 PKRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGV 512

Query: 454 PISKPVAGIAMGLVKDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           P+  PVAGIAMGLV       + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+
Sbjct: 513 PLKAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEFITALQLDTKL 572

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI  +++  AL+QA+  R  IL+ MS+V+     ++    PR+  + IP ++I  +IG 
Sbjct: 573 DGIPSHVLADALEQARDARAAILDTMSEVIESP-DEMSGLAPRITSVTIPVNKIGELIGP 631

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQV 627
            GK I  I E+TGA V+I++DGTV I++++    +AA + + SI    +P+V + + G V
Sbjct: 632 KGKTINAITEETGADVSIEEDGTVYISAATGEAADAAIDRVNSIANPQLPKVGERFLGTV 691

Query: 628 VKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           VK + FGAFV     RDGLVHIS+L   ER+ K  DVV  GD + V++ D D+RGKI L
Sbjct: 692 VKTVAFGAFVSLTPGRDGLVHISKLGGDERIEKVEDVVNVGDKIQVEIADIDNRGKISL 750


>gi|254525392|ref|ZP_05137444.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536816|gb|EEE39269.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 691

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/679 (40%), Positives = 414/679 (60%), Gaps = 18/679 (2%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +   G+T +L T     + KD  DF PL  +Y+E+ YA G+IPGG++RRE RP E   LI
Sbjct: 1   MIECGDTSLLVT-ATKTTKKDTSDFLPLICDYEEKLYAAGRIPGGFMRREGRPPERATLI 59

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           +R+IDR +RPLF    ++E Q++ + +  D      V+++  AS A +L  +PF GP+  
Sbjct: 60  ARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPADVLAVTGASLATLLGEIPFYGPMAA 119

Query: 152 AQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
            +V  I   ++LNP   E ++G LD+ ++GT D ++M+E  ANQLSE   ++AI FG+  
Sbjct: 120 VRVGLIGDDFILNPSYREIEKGDLDIVIAGTPDGIVMIEAGANQLSEQDTIEAIDFGYEA 179

Query: 211 CKPVIEAISKLAKMCAKEPIVIDSKDFSK-----LEEEMSQMIKEDLRVSCFIPEKYVRC 265
              +I++   L K    + I     +  K     LE+  ++ I+  L+   F   K  R 
Sbjct: 180 VTELIKSQDDLLKDLGIKQIKPSDPEEDKTLSSYLEKNCTKPIELVLKK--FDLSKEDRD 237

Query: 266 KQIDDLKKKM---VSYFSSEHS-----SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
            +++ +K +    +     +       S ++  + S F+ +  K++R+ +++   R+DGR
Sbjct: 238 LELEKIKVETQGKIESLKDDDQLKVLLSEDDKLLSSDFKKLTKKLMRSQIINDNKRVDGR 297

Query: 318 DSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           D + VR ISA  G+L  R HGS+LF RG TQ +   TLGT  D Q +D L+ +    ++ 
Sbjct: 298 DLDEVRKISAFAGILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTEKTYLH 357

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           HYNF P + GE   M  P RREIGHG LA RAI PVLP    FPY LR+VSE+  S+GS+
Sbjct: 358 HYNFPPYSVGETRPMRTPGRREIGHGALAERAIIPVLPGKETFPYVLRVVSEVLSSNGST 417

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
           SM +VCGS+L+L+DAGVP+  PV+G AMGL+K+G +  IL+DI G ED LG MDFKVAGT
Sbjct: 418 SMGSVCGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEVRILTDIQGIEDFLGDMDFKVAGT 477

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           D GITA+QMDMKI G+  +I+  A+++A+  RLHIL +M + +++ +  L    PR+   
Sbjct: 478 DKGITALQMDMKITGLPVSIISDAIKKARPARLHILEKMQEAINKPQESLSPHAPRLLSF 537

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I P+ I  VIG GG+ I+GI E+T  K++I+D G V IAS   A  E A+++I  +T  
Sbjct: 538 RIDPELIGTVIGPGGRTIKGITERTNTKIDIEDGGIVTIASHDGAAAEEAQKIIEGLTRK 597

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               +I+ G V +++  GAFV     ++G+VHISQLS  RV +  DVV++GD V V++ +
Sbjct: 598 VHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQLSEARVERVEDVVRQGDEVTVRVRE 657

Query: 677 FDDRGKIKLSMKVVDQNTG 695
            D RG+I L+++ V QN+G
Sbjct: 658 IDSRGRINLTLRGVGQNSG 676



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 23/217 (10%)

Query: 21  GRIARQSDGAVLATYGETVVLATVV--YDRSLKDGQDFFPLT-----VNYQERTYAVGKI 73
           G + ++  G+ L   G T VL+T         ++  D  P T      +Y    Y+VG+ 
Sbjct: 310 GILPKRVHGSALFQRGLTQVLSTTTLGTPSDAQEMDDLNPSTEKTYLHHYNFPPYSVGET 369

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSM 131
                R    P   EI    + +R+I P+    + +    +V+  V+  +  +S  + S+
Sbjct: 370 -----RPMRTPGRREIGHGALAERAIIPVLPGKETFPYVLRVVSEVLSSNGSTS--MGSV 422

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVSGTQDAVL 186
             ++ +L+ +G+P + PV G  +  I  G+ V        +++  G +D  V+GT   + 
Sbjct: 423 CGSTLSLLDAGVPLKAPVSGTAMGLIKEGKEVRILTDIQGIEDFLGDMDFKVAGTDKGIT 482

Query: 187 MVELEA--NQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            ++++     L   ++ DAI         ++E + + 
Sbjct: 483 ALQMDMKITGLPVSIISDAIKKARPARLHILEKMQEA 519


>gi|294786716|ref|ZP_06751970.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens F0305]
 gi|294485549|gb|EFG33183.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens F0305]
          Length = 922

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/713 (41%), Positives = 422/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A    +++VL+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 18  FGKRVLRFETGRLAQQADGAVAAYLDNDSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + S  ++
Sbjct: 78  AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDSYDMI 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           +M AASA+ M+SGLPFEGPV G ++  I+ Q+V  P   E +    +L V+G        
Sbjct: 138 AMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPSWSERERAVFELVVAGRVLDNGDV 197

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIE----AISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I+    A ++L    AK+  
Sbjct: 198 AIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKVICQAQNELKAQAAKDTK 257

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HS 284
                 +    L   + Q+   DL  +  I EK  R  +I  +K+ +V   +SE      
Sbjct: 258 DFPLFPEYTEDLYNRIDQIAHSDLDEALSIAEKLPRQDRISQIKQGVVETLTSEFTGMED 317

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 318 AEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLSDIRTLSAEVDVVPRVHGSALFQRG 377

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ  D+LSG     +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 378 ETQILGVTTLNMLKMEQTTDALSGPDTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 437

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+  PVAGIAM
Sbjct: 438 AERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIAM 497

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 498 GLVSGEVDGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAGA 557

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL  + + +     ++  + PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 558 LQQAYEARTTILEVIDECIDG-VNEMSPYAPRIITTKVPVDKIGEVIGPKGKMINEIQEK 616

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA+V+I+DDGTV IAS      EAAR++I  IT   +PE  + Y+G+VVK   FGAFV+
Sbjct: 617 TGAEVSIEDDGTVYIASEGGEAAEAARQIIDQITHPHIPEAGEKYQGKVVKTTSFGAFVN 676

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      +R+    DV++EGDTV V +   DD+GKI L++
Sbjct: 677 LTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 729


>gi|168061313|ref|XP_001782634.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665867|gb|EDQ52537.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 817

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/710 (37%), Positives = 410/710 (57%), Gaps = 18/710 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E     +  ETG++AR + GAV+   GET VL TVV D     G+DF PL V Y+E+ 
Sbjct: 88  EAEVGNMKMSFETGKLARFASGAVVVGVGETKVLVTVVADYKFDGGKDFLPLQVEYREKQ 147

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA GKIP  ++RRE  P E E+L  R+IDRS+RPLF K +  ++Q+I NV+  D +  P 
Sbjct: 148 YAQGKIPATFMRREGAPKERELLCGRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPD 207

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           V+++ AASAAL++S +P++GP+   ++  + G++++NP +DE     L+L  + T +  +
Sbjct: 208 VLAVNAASAALVISDIPWKGPIGCVRIGRVKGKFIVNPNMDEFSLSDLNLVYACTAEKTV 267

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMS 245
           M+E +A +++    + A+   H E   +I    +LA   A     +       ++ E++ 
Sbjct: 268 MIETQAREITNQDYVAALHLAHAEATKLIPPQLELAAKVAVLKRPLPVLTVPPEVLEKVR 327

Query: 246 QMIKEDLRVSCFIP--EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
            + K  +      P   K+ R + +  +++++ +   SE    +   +   F+ ++ +V+
Sbjct: 328 SLAKIAIEAVMGNPQFGKFERGQTLGAIEEEVKNRLISEGDEVSVKLLPYAFDAVKKEVL 387

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  + +K +R+DGR    VR++  + G     HGSS+F RG+TQ +  VT+G  +D Q +
Sbjct: 388 RRNIFEKGMRVDGRGLNQVRELQCEAGTYPALHGSSVFSRGNTQVLCTVTIGAPDDAQRL 447

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           DSL G  R  FM+HY+F P +  EV R G  +RRE+GHG LA +A+  +LP    FPY++
Sbjct: 448 DSLVGIDRKRFMVHYSFPPFSINEVGRTGGLNRREVGHGTLAEKALVALLPPEEDFPYSV 507

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIIL 476
           R+ SE   SDGSSSMATVCG SLALMDAG+P+   V  +++GLV   D       ++ IL
Sbjct: 508 RVTSECLASDGSSSMATVCGGSLALMDAGIPLRSHVGAVSVGLVSVSDPETGRVTEYRIL 567

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  AL+ A  GR  IL+ M 
Sbjct: 568 TDILGLEDHLGDMDFKIAGTKKGITAIQLDIKPAGIPLHILCEALEPALVGRTQILDFME 627

Query: 537 KVLSESRLQL-GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +V+S  R     E  PR   M I  D I  +IG  G  I+ I + + A++NI  DG V I
Sbjct: 628 QVISSPRDSTARENLPRSGTMNIQQDSIGRLIGPQGSNIKNIQKVSDARINISGDGVVTI 687

Query: 596 ASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            +   A  + A++M+ +      EV   Y  +VV + DFGAF+   G   GL+HIS+++ 
Sbjct: 688 FARDQASFDLAKQMVEASVGKEVEVGGTYSARVVAIKDFGAFMELNGGYQGLLHISEIAH 747

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK-----VVDQNTGKPIV 699
           ER+ + SD +  G  + V  +  D RG +KLS K     VV +N  +P +
Sbjct: 748 ERIERVSDYLSIGQELSVVCIGRDLRGNLKLSRKMTLPLVVPENATQPPI 797


>gi|332675901|gb|AEE72717.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           266]
          Length = 749

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/710 (38%), Positives = 413/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +     ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 33  KLGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 92

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 93  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 152

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 153 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 212

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 213 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 272

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 273 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 329

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 330 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 389

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 390 QILGVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 449

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 450 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 509

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 510 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 569

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 570 KQAKEARTAILEVMNEAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 628

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 629 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 688

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 689 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 738


>gi|239991184|ref|ZP_04711848.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 11379]
          Length = 737

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/709 (39%), Positives = 414/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  VM  + +    V
Sbjct: 76  AAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETVMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G       
Sbjct: 136 VAINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA +             +E++V   +       K + +A S LA   AK   
Sbjct: 196 VAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEG 255

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+ +D +D   + + +++ +  +L+ +  I  K  R  ++D +K+        E    
Sbjct: 256 DFPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL
Sbjct: 433 RAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 ADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLM 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|315226331|ref|ZP_07868119.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens DSM 10105]
 gi|315120463|gb|EFT83595.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens DSM 10105]
          Length = 966

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/713 (41%), Positives = 422/713 (59%), Gaps = 37/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R L+ ETGR+A+Q+DGAV A    +++VL+T     S K+  DFFPLTV+ +E+ YA
Sbjct: 62  FGKRVLRFETGRLAQQADGAVAAYLDNDSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYA 121

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RPLF    +NE QV+  ++  + + S  ++
Sbjct: 122 AGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDSYDMI 181

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           +M AASA+ M+SGLPFEGPV G ++  I+ Q+V  P   E +    +L V+G        
Sbjct: 182 AMNAASASTMISGLPFEGPVSGVRLALIDDQWVAFPSWSERERAVFELVVAGRVLDNGDV 241

Query: 184 AVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIE----AISKLAKMCAKEPI 230
           A+ M+E  A + +  ++ D          +  G    KP I+    A ++L    AK+  
Sbjct: 242 AIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKVICQAQNELKAQAAKDTK 301

Query: 231 VID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE----HS 284
                 +    L   + Q+   DL  +  I EK  R  +I  +K+ +V   +SE      
Sbjct: 302 DFPLFPEYTEDLYNRIDQIAHSDLDEALSIAEKLPRQDRISQIKQGVVETLTSEFTGMED 361

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           +  E EI + F+++Q ++VR  +L +  R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 362 AEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLSDIRTLSAEVDVVPRVHGSALFQRG 421

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   + EQ  D+LSG     +M +Y   P +TGE  R+G+P RREIGHG L
Sbjct: 422 ETQILGVTTLNMLKMEQTTDALSGPDTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGAL 481

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L+DAGVP+  PVAGIAM
Sbjct: 482 AERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTMSLLDAGVPLKAPVAGIAM 541

Query: 465 GLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GLV    D    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +I+  A
Sbjct: 542 GLVSGEVDGQMVYKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAGA 601

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           LQQA   R  IL  + + +     ++  + PR+    +P D+I  VIG  GK+I  I E+
Sbjct: 602 LQQAYEARTTILEVIDECIDG-VNEMSPYAPRIITTKVPVDKIGEVIGPKGKMINEIQEK 660

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA+V+I+DDGTV IAS      EAAR++I  IT   +PE  + Y+G+VVK   FGAFV+
Sbjct: 661 TGAEVSIEDDGTVYIASEGGEAAEAARQIIDQITHPHIPEAGEKYQGKVVKTTSFGAFVN 720

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
                DGL+HISQ+      +R+    DV++EGDTV V +   DD+GKI L++
Sbjct: 721 LTPGTDGLLHISQIRNLANGDRIDAVEDVLREGDTVEVVVQGVDDKGKISLAI 773


>gi|295836212|ref|ZP_06823145.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
 gi|295825905|gb|EDY46178.2| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
          Length = 739

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/708 (39%), Positives = 412/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 78  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 138 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAK--------MCAK 227
           A++MVE EA + +  +V         + +  G +  KP I+ + K              +
Sbjct: 198 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         +     
Sbjct: 258 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 315 EKEISAAYRALTKAVVRERVIKDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 435 ALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 494

Query: 468 KDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            +       ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 495 SETHGGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 555 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 614 EITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721


>gi|116669995|ref|YP_830928.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter sp. FB24]
 gi|187470967|sp|A0JUV8|PNP_ARTS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116610104|gb|ABK02828.1| Polyribonucleotide nucleotidyltransferase [Arthrobacter sp. FB24]
          Length = 746

 Score =  661 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/713 (38%), Positives = 410/713 (57%), Gaps = 41/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +     +T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQ----YVLNPRLDEDQGS-LDLFVSGT--- 181
           ++ A+S +  LSGLPF GP+ G +V  +  +    +V  P+  + + S  ++ V+G    
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVADEHGSQWVAFPKHSQLENSVFNMVVAGRVAG 197

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   S +++          + +  G    KP I+A+            K
Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCDAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+ +D +D       +     E L     I +K  R    D LK  + S  + + 
Sbjct: 258 PTVEFPVFLDYED--DAYAAVEAAAAEKLAAVFQIADKQERDAASDQLKDDVTSSLAGQF 315

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F  +   VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F R
Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAGIA
Sbjct: 435 LAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E
Sbjct: 555 ALKQAREARLHILEVINSAIDTP-DELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +++    +AAR  I +I    VPE+ + Y G VVK   FGAF+
Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFI 673

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS+L      +RV    DVV  G  + V++   DDRGK+ LS
Sbjct: 674 SLTPGKDGLLHISELRKIAGGKRVDNVEDVVSVGQKIQVEITKIDDRGKLSLS 726


>gi|254393066|ref|ZP_05008227.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294815456|ref|ZP_06774099.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443808|ref|ZP_08218542.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706714|gb|EDY52526.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328055|gb|EFG09698.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 739

 Score =  661 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/708 (39%), Positives = 411/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE EA +             +E+VV   +       K + +A S LA   AK    
Sbjct: 197 AIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPEGE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ ++ +D   + E ++  +K +L  +  I  K  R  ++D +K+              
Sbjct: 257 FPVFLEYQD--DVYEALTAAVKGELAQALTIAGKQDRETELDRVKELAAEKLLPAFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKALVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 AIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|333024088|ref|ZP_08452152.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
           sp. Tu6071]
 gi|332743940|gb|EGJ74381.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
           sp. Tu6071]
          Length = 738

 Score =  661 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/708 (39%), Positives = 412/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAK--------MCAK 227
           A++MVE EA + +  +V         + +  G +  KP I+ + K              +
Sbjct: 197 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         +     
Sbjct: 257 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKAVVRERVIKDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            +       ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|237785717|ref|YP_002906422.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|257096678|sp|C4LJ74|PNP_CORK4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237758629|gb|ACR17879.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 775

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/745 (38%), Positives = 415/745 (55%), Gaps = 63/745 (8%)

Query: 2   FDVHTVEI-----EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQD 55
           F  H+VE      ++  R ++LETG++ARQ++G+V+A    +T++L+T       ++G D
Sbjct: 28  FGTHSVEATIDNGDFGSRTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFD 87

Query: 56  FFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
           FFPLTV+ +ER YA G+IPG + RRE RP  + IL  R+IDR +RP F K  +NE QVI+
Sbjct: 88  FFPLTVDVEERMYAAGRIPGSFFRREGRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIV 147

Query: 116 NVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE 169
            VM  D +    VV++ AASA+  LSGLP  GPV G ++  I      +GQ+V  P  ++
Sbjct: 148 TVMSLDPKDMYDVVAINAASASTQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQ 207

Query: 170 DQGSL-DLFVSGT---------------------------QDAVLMVELEANQL------ 195
            + +L ++ V+G                              A++MVE  A +       
Sbjct: 208 HESALFEMVVAGRLTDEQVPEKPRKGRRRGRKSSPRKKTDNVAIMMVEAGATETVVERVN 267

Query: 196 ------SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQM 247
                 +E VV + I         +  A   L +    E           + +   +   
Sbjct: 268 DGAPAPTESVVAEGIEAAKPFIAELCGAQQALRQAVDPETEEFPLFPPYGADVLAAVDSE 327

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            K  +     I +K  R + +       V     E     E EI +    +  +VVR+ +
Sbjct: 328 AKGRISDIMSIADKQERDEALSSDMDDTVEALLEEFPE-REAEIRAAHNAVTKEVVRSRI 386

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L    R+DGR  E +RD+  +V L+ R HGSSLF RG+TQ + V TL T + EQ VDSL 
Sbjct: 387 LADGFRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLG 446

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 ++ HYNF P +TGE  R+G+P RREIGHG LA RA+ P++P    FPYT+R VS
Sbjct: 447 PVDHRRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALKPMIPSRDDFPYTIRQVS 506

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDE 483
           E   S+GS+SM +VC S+L+L +AGVP+  PVAGIAMGLV         ++ L+DI G E
Sbjct: 507 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKMTYVTLTDILGAE 566

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D  G MDFKVAGT+  ITA+Q+D K+ GI  +++  AL+QA+  RL ILN M++V+ E  
Sbjct: 567 DAFGDMDFKVAGTEDFITALQLDTKLDGIPSDVLAGALKQAREARLEILNTMAEVIDEPD 626

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             + ++ PR+  +++P  +I  VIG  GK I  I E TGA+V+I+DDGTV I+++S    
Sbjct: 627 P-MSDYAPRITTISVPVSKIGEVIGPKGKNINQITEDTGARVSIEDDGTVFISATSGGSA 685

Query: 604 EAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKT 660
           EAA + I  I    +P+V + + G VVK   FGAFV     RDGLVHIS+L   +R+ K 
Sbjct: 686 EAAVDRINEIANPQLPKVGERFLGTVVKTTAFGAFVSILPNRDGLVHISKLGGKKRIEKV 745

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKL 685
            DVV  GD + V++ D D+RGKI L
Sbjct: 746 EDVVNVGDKLEVEIADIDNRGKISL 770


>gi|318062386|ref|ZP_07981107.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
           SA3_actG]
 gi|318078519|ref|ZP_07985851.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
           SA3_actF]
          Length = 738

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/708 (39%), Positives = 411/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227
           A++MVE EA + +  +V         + +  G    KP I+ + K              +
Sbjct: 197 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLCKAQADLAAKAAKATGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         +     
Sbjct: 257 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKAVVRERVIRDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 ALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            +       ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|319950925|ref|ZP_08024802.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
 gi|319435418|gb|EFV90661.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
          Length = 753

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/713 (39%), Positives = 412/713 (57%), Gaps = 39/713 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETGR+A+Q+ G+V+A   + T++L+     +  KD  DFFPLTV+ +ER Y
Sbjct: 24  DFGRREVRFETGRLAKQAAGSVVAYLDDDTMLLSATTAGKHPKDHFDFFPLTVDVEERMY 83

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+ + IL  R+IDR +RP F+   +NE QV++ VM  D +    V
Sbjct: 84  AAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFADGVRNEVQVVVTVMSLDPKDLYDV 143

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDEDQGS-LDLFVSGT 181
           V++ AASA+  LSGLPF GPV G +V  I       GQ+V  P  ++ +G+  D+ V+G 
Sbjct: 144 VAINAASASTQLSGLPFSGPVGGVRVALIPTAADPAGQWVAFPTSEQLEGAVFDMVVAGR 203

Query: 182 --------QDAVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKMC 225
                     A++MVE EA     + +         + +  G    KP I  +    +  
Sbjct: 204 VVGSGDDADVAIMMVEAEATDNVIEKIAGGAQAPTEEVVAQGLEAAKPFIAELCAAQQAL 263

Query: 226 AK----EPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           A      P                ++++ +  L     I +K  R    D+LK  ++   
Sbjct: 264 ATAAPGTPREFPLFPPYADDAYAAVAEVAETKLAEIMRIADKQEREVATDELKASVLDEL 323

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +   +    GEI + F+ +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+
Sbjct: 324 ADRFAD-RLGEIGAAFKSLTKKIVRQRILTDHFRIDGRGVRDIRALSAEVEVIPRAHGSA 382

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREI
Sbjct: 383 LFERGETQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREI 442

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PV
Sbjct: 443 GHGALAERALMPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPV 502

Query: 460 AGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   
Sbjct: 503 AGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTGMFVTALQLDTKLDGIPSE 562

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QA+  RL IL+ M++ + E   +L  F PR+  + +P D+I  VIG  GK+I 
Sbjct: 563 VLAGALTQAREARLTILDVMAEAIDEP-DELSPFAPRIIAIKVPVDKIGEVIGPKGKMIN 621

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDF 633
            I E+TGA V+I+DDGTV I ++     +AA + I +I    +P+V + + G VVK   F
Sbjct: 622 SITEETGASVSIEDDGTVYIGATDGESAQAAIDKINAIANPQLPKVGERFLGTVVKTAPF 681

Query: 634 GAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAF+     RDGLVHIS+L   +RV K  DVV  GD + V++ D D+RGKI L
Sbjct: 682 GAFLSLLPGRDGLVHISKLGGGKRVGKVEDVVNVGDKMQVEIADIDNRGKISL 734


>gi|302522241|ref|ZP_07274583.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
 gi|302431136|gb|EFL02952.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
          Length = 739

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/708 (39%), Positives = 411/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 78  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 138 AINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 197

Query: 184 AVLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLAKM--------CAK 227
           A++MVE EA + +  +V         + +  G    KP I+ + K              +
Sbjct: 198 AIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVLCKAQADLAAKAAKATGE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  ++ +L  +  I  K  R  ++D +K         +     
Sbjct: 258 FPIFLDFQD--DVYEALTAAVRGELAQALTIAGKQEREAELDRVKGLAAEKLLPQFEG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   VVR  ++  K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 315 EKEISAAYRALTKAVVRERVIRDKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 435 ALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            +       ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 495 SETVKGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 555 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I SI +  +PEV + Y G VVK   FGAFV    
Sbjct: 614 EITIEDDGTIYIGAADGPAAEAARTTINSIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 721


>gi|32141272|ref|NP_733673.1| polynucleotide phosphorylase/polyadenylase [Streptomyces coelicolor
           A3(2)]
 gi|256784838|ref|ZP_05523269.1| polynucleotide phosphorylase/polyadenylase [Streptomyces lividans
           TK24]
 gi|289768731|ref|ZP_06528109.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
           TK24]
 gi|81445833|sp|Q8CJQ6|PNP_STRCO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24413893|emb|CAD55364.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces coelicolor A3(2)]
 gi|289698930|gb|EFD66359.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
           TK24]
          Length = 739

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/708 (39%), Positives = 411/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           A++MVE EA   +        E    + +  G +  KP I+ + +          K   +
Sbjct: 197 AIMMVEAEATDKTIKLVEGGAEAPTEEVVAAGLDAAKPFIKVLCRAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI +D +D   + E ++  +K +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPIFLDFQD--DVLEALTGAVKPELTQALTIAGKQEREAELDRVKGLAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRALTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              +     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + I+DDGT+ I ++  ++ EAAR  I  I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 DITIEDDGTIYIGAAQGSQAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|118466887|ref|YP_882853.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           104]
 gi|187610285|sp|A0QIW5|PNP_MYCA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118168174|gb|ABK69071.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mycobacterium avium 104]
          Length = 748

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/730 (39%), Positives = 422/730 (57%), Gaps = 50/730 (6%)

Query: 1   MFDVHTVEIE---WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           MF+  T  I+   +  R ++ ETGR+A+Q+ GAV+A   +  ++L+     +S K+  DF
Sbjct: 1   MFEA-TATIDNGSFGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDF 59

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ 
Sbjct: 60  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVT 119

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD 175
           ++  D      V+++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ +    D
Sbjct: 120 ILSLDPNDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFD 179

Query: 176 LFVSGTQD--------AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE--- 216
           + V+G +         A++MVE EA     +++           +  G    KP IE   
Sbjct: 180 MVVAGRKVDGADGPDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQGLEAAKPFIEVLC 239

Query: 217 -AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL 271
            A  +LA   A+     P   D  D   +   ++ +  ++L  +  I  K  R  + D+L
Sbjct: 240 TAQQELADKAARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDEL 297

Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331
           K ++++  +  +    E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V +
Sbjct: 298 KAEVLARLAETYEG-REKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAV 356

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391
           + R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+
Sbjct: 357 VPRAHGSALFQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRV 416

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G+P RREIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+LAL++A
Sbjct: 417 GSPKRREIGHGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNA 476

Query: 452 GVPISKPVAGIAMGLVKDGDD-------------FIILSDISGDEDHLGHMDFKVAGTDS 498
           GVP+  PVAGIAMGLV D  +             F+ L+DI G ED  G MDFKVAGT  
Sbjct: 477 GVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKD 536

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            +TA+Q+D K+ GI   ++  AL QAK  RL IL  M++ + E   ++  + PRV  + +
Sbjct: 537 FVTALQLDTKLDGIPSQVLAGALSQAKDARLTILEVMAEAIDEP-DEMSPYAPRVTTIRV 595

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DV 616
           P D+I  VIG  GK+I  I E+TGA+++I+DDGTV + ++     +AA + I +I    +
Sbjct: 596 PVDKIGEVIGPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQL 655

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P V + + G VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ 
Sbjct: 656 PTVGERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIA 715

Query: 676 DFDDRGKIKL 685
           D D RGKI L
Sbjct: 716 DIDKRGKISL 725


>gi|314929746|gb|EFS93577.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL044PA1]
 gi|328907604|gb|EGG27368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium sp. P08]
          Length = 735

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/710 (38%), Positives = 412/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++    ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KFGRHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEVSGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPETSRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M+  +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNDAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           G  ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GTNISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|212550826|ref|YP_002309143.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|226702596|sp|B6YRB0|PNP_AZOPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212549064|dbj|BAG83732.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 719

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/711 (40%), Positives = 439/711 (61%), Gaps = 19/711 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     I+   GR + LETG++A+Q+DGA++     T++LATV   +      DF PL
Sbjct: 1   MINSIIKTIDLGDGRTITLETGKLAKQADGAIVLRMNNTMILATVCVAKDTNPCVDFLPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R+IDR++RPLF + Y +E  V I +  
Sbjct: 61  QVEYKEKFSAFGRFPGGFTKREGRASDYEILTCRLIDRTLRPLFPRDYHSEVFVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
            D E  P  ++ +AASAAL +S +PF GP+   +V  I+G++ +NP   E  +  +D+ V
Sbjct: 121 SDGEDIPDALAGLAASAALSVSTIPFNGPISEVRVARIDGKFKINPTFGELAKADMDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T D ++MVE E N++SE+ +L+AI   H   KP  +A  +LA++      + ++    
Sbjct: 181 GATADNIMMVEGEMNEVSEEEMLEAIKAAHEAIKPQCKAQIELARIVGTT--IKNTYSHE 238

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKY-----VRCKQIDDLKKKMVSYFSSEHSSWNE-GEIV 292
             +EE+   IK  L    +   K       R +    + ++    F  +  S  +   I 
Sbjct: 239 VNDEELRSDIKTKLYDKVYAVAKSGQCKNKRIEAFQTIIEEYKKQFKEKELSEEKIFLIK 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + +I+ +V+R  +LD+ +R+DGR +  +R I ++V  +   HGS++F RG+TQA+  V
Sbjct: 299 RYYYEIEKEVMRRCILDENIRIDGRKTTEIRPIWSEVNPITGPHGSAIFTRGETQALATV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ +E+ +D +    +  F++HYNF P ATGE        RREIGHG LA RA+ P+
Sbjct: 359 TLGTKLNEKIIDDVLINDKERFLLHYNFPPFATGEARAQRGIGRREIGHGNLAHRALKPI 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDG 470
           +P    +PY +R+VS+I ES+GSSSMATVC  +L+LMDAGV I +PV+GIAMGL+  K+G
Sbjct: 419 IPN--NYPYVIRVVSDILESNGSSSMATVCAGTLSLMDAGVQIKRPVSGIAMGLIFEKEG 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + ILSDI GDEDHLG MDFKVAGT  GITA QMD+KI G+S  ++  AL QAK+GR +
Sbjct: 477 SKYAILSDILGDEDHLGDMDFKVAGTKKGITATQMDIKIDGLSYEVLERALSQAKQGREY 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD- 589
           IL++M + + E R  L   TP++EI+ IP + I +VIG GGK+I+ + E+TG  + I++ 
Sbjct: 537 ILDKMLETIPEPRTDLKPHTPKIEIIIIPKEFIGSVIGPGGKIIQRLQEETGTTITIEEI 596

Query: 590 --DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
              G ++I   +   I+AA   I+ I  VPEV +IY+G++  +M +GAF+ F   ++GL+
Sbjct: 597 EKMGRIEIFGDNKKSIDAALTRIKGIVSVPEVGEIYEGKIRSIMPYGAFIEFLPGKEGLL 656

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           HIS++S + +    +  + EGD + +KL+D D + GK KLS K++  ++ K
Sbjct: 657 HISEISWKHLESIEEAGLNEGDFIKIKLVDIDSKTGKFKLSHKILLPHSEK 707


>gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 710

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/691 (40%), Positives = 425/691 (61%), Gaps = 17/691 (2%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +ETG+IARQ+DGA +     T++LATVV  + +K+  +F PLTV+Y+E+  A GKIP
Sbjct: 16  PIVIETGKIARQADGAAIVRAKNTILLATVVVSKEIKNEINFLPLTVDYREKYSASGKIP 75

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GG+++RE RP++ EIL  R++DR +RP FS+ ++NE Q++I+++ +D    P  ++ +AA
Sbjct: 76  GGFIKREGRPSDEEILTMRLVDRVLRPTFSESFRNEIQIMISLLSYDKTVLPDELAGLAA 135

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEAN 193
           S AL ++G+PF GP+   ++  +NG++++NP LD+ ++  +DL V  ++ +++M+E E  
Sbjct: 136 STALSVAGIPFNGPISEIRIIRVNGKFIINPSLDQLEKADIDLIVGASEHSIIMIEGEMK 195

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--------DSKDFSKLEEEMS 245
           +++E   L AI   HN  KP IEA  KL K   K              S +   LE+E+ 
Sbjct: 196 EITEKEFLKAINIAHNAIKPQIEAQKKLVKKIQKNRFFDFKENNRENPSLEKEFLEKELF 255

Query: 246 QMIKEDLRVSCF-IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
               E +      + +K  R  Q   +        S E    NE  I   +E+I+ +VVR
Sbjct: 256 SFSYEKIYGMYKDLLDKKTRSIQEKTILNNFKKKLSIEEREKNEIFIDQYYEEIKKRVVR 315

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L++ +R+DGR S+ +R I + V  L   HGS+LF RG+TQ++  VTLG+  D   +D
Sbjct: 316 HMILEEGIRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGSSLDANKID 375

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           ++    +  F +HYNF P +TGE+  +   SRREIGHG LA+RA+  V+P     PYT+R
Sbjct: 376 NVIMENQEKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQRALKNVIP--DNNPYTIR 433

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VS+I ES+GSSSMATVC +SLALMDAG+ I  PV+GI+MGL  D +  +ILSDI G+ED
Sbjct: 434 VVSDILESNGSSSMATVCAASLALMDAGIAIENPVSGISMGLFTDKEKKVILSDIMGEED 493

Query: 485 HLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
             G +DFK+ GT +GITA QMD+ KI G++ +++   L QA  GRL IL +M + L + R
Sbjct: 494 GFGELDFKITGTKNGITACQMDVKKIQGLTNDLLSQILMQALEGRLFILKKMLETLPKYR 553

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASSSL 600
            +     P++    IP D I  VIG GGKVI+ I   T   + I++ G    ++I     
Sbjct: 554 NKQKPNAPKIYTFNIPKDFIGAVIGPGGKVIQEIQSCTDTSILIEEKGDMGAIEIIGKDY 613

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            +++ A   I+ IT VPE+ KIYK +V  + DFGAFV      +GL+HIS++  +R+   
Sbjct: 614 QKMKQAINRIKEITFVPEIGKIYKAKVKSIKDFGAFVEISKGVEGLLHISEIGWKRLNNI 673

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            + +  GD + VK +  D++  K+KLS KV+
Sbjct: 674 EEELNIGDIIEVKFMGIDEKNKKMKLSRKVL 704


>gi|255011565|ref|ZP_05283691.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           3_1_12]
          Length = 648

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/652 (40%), Positives = 402/652 (61%), Gaps = 17/652 (2%)

Query: 1   MFDVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   +  E  V I +  
Sbjct: 61  QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNFHAEVYVNIILFS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+G++V+NP  D+ ++  +D+ V
Sbjct: 121 ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKADMDIMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           + T + ++MVE E +++SE  +L+A+   H   K   +A  +L +M  K   V       
Sbjct: 181 AATYENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGK--TVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
           + +EE+ + + +      +         K+ R    D ++ +  + FS E        I 
Sbjct: 239 ENDEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR +  +R I  +VG L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D +    +  F++HYNF P +TGE        RREIGHG LA RA+  +
Sbjct: 359 TLGTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKKM 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--G 470
           +P    +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I KPV+GIAMGL+K+   
Sbjct: 419 IP--EDYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGE 476

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ G+S  I+  AL QAK GR+H
Sbjct: 477 EKYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMH 536

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL ++ + ++E R +L +  PR+E M IP + I  VIG GGK+I+G+ E+TGA + I++ 
Sbjct: 537 ILGKIQETIAEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEI 596

Query: 591 ---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
              G ++I+ ++   I+ A  +I+ I  VPE+ ++YKG+V  +M +GAFV F
Sbjct: 597 DNVGRIEISGTNKKSIDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEF 648


>gi|182435576|ref|YP_001823295.1| polynucleotide phosphorylase/polyadenylase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326776210|ref|ZP_08235475.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
           XylebKG-1]
 gi|226702691|sp|B1VXZ6|PNP_STRGG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|178464092|dbj|BAG18612.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase alpha chain [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656543|gb|EGE41389.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 737

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/709 (39%), Positives = 417/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    V
Sbjct: 76  AAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AAS + +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G       
Sbjct: 136 VAINAASCSTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKL--------AKMCA 226
            A++MVE EA + +  +V D         +  G +  KP I+A+ K         AK   
Sbjct: 196 VAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLDAAKPFIKALCKAQSDLASKAAKPVG 255

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           + P+ +D +D   + E +++ +  +L+ +  I  K  R  ++D +K+             
Sbjct: 256 EFPVFLDYQD--DVFEALAKAVTSELKQALTIAGKQDREAELDRVKEIAAEKLLPAFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +  ++VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISAAYRSLTKQLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL
Sbjct: 433 RAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I + + ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 ADITIEDDGTIYIGAQAGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLM 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|254776111|ref|ZP_05217627.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 748

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/730 (39%), Positives = 422/730 (57%), Gaps = 50/730 (6%)

Query: 1   MFDVHTVEIE---WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDF 56
           MF+  T  I+   +  R ++ ETGR+A+Q+ GAV+A   +  ++L+     +S K+  DF
Sbjct: 1   MFEA-TATIDNGSFGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDF 59

Query: 57  FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN 116
           FPLTV+ +ER YA G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ 
Sbjct: 60  FPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVT 119

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLD 175
           ++  D      V+++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ +    D
Sbjct: 120 ILSLDPNDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFD 179

Query: 176 LFVSGTQD--------AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE--- 216
           + V+G +         A++MVE EA     +++           +  G    KP IE   
Sbjct: 180 MVVAGRKVDGADGPDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQGLEAAKPFIEVLC 239

Query: 217 -AISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDL 271
            A  +LA   A+     P   D  D   +   ++ +  ++L  +  I  K  R  + D+L
Sbjct: 240 TAQQELADKAARPTSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDEL 297

Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331
           K ++++  +  +    E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V +
Sbjct: 298 KAEVLARLAETYEG-REKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAV 356

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391
           + R HGS+LF RG+TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+
Sbjct: 357 VPRAHGSALFQRGETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRV 416

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G+P RREIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+LAL++A
Sbjct: 417 GSPKRREIGHGALAERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNA 476

Query: 452 GVPISKPVAGIAMGLVKDGDD-------------FIILSDISGDEDHLGHMDFKVAGTDS 498
           GVP+  PVAGIAMGLV D  +             F+ L+DI G ED  G MDFKVAGT  
Sbjct: 477 GVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKD 536

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            +TA+Q+D K+ GI   ++  AL QAK  RL IL  M++ + E   ++  + PRV  + +
Sbjct: 537 FVTALQLDTKLDGIPSQVLAGALSQAKDARLIILEVMAEAIDEP-DEMSPYAPRVTTIRV 595

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DV 616
           P D+I  VIG  GK+I  I E+TGA+++I+DDGTV + ++     +AA + I +I    +
Sbjct: 596 PVDKIGEVIGPKGKIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQL 655

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P V + + G VVK  DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ 
Sbjct: 656 PTVGERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIA 715

Query: 676 DFDDRGKIKL 685
           D D RGKI L
Sbjct: 716 DIDKRGKISL 725


>gi|195112939|ref|XP_002001029.1| GI10566 [Drosophila mojavensis]
 gi|193917623|gb|EDW16490.1| GI10566 [Drosophila mojavensis]
          Length = 770

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/717 (35%), Positives = 404/717 (56%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           DV +VE+ +  GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 36  DVPSVEVSFSNGRKMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++  D
Sbjct: 96  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMD 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 156 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLVVSA 215

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237
           T+ + V+M+E + N +    +L AI  G  E + +I  I +L K   ++   +D   +  
Sbjct: 216 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKRDVDELPEPQ 275

Query: 238 SKLEEEMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           ++L + +  M +  LR        +K  R   +++++  ++    S +   +   I   F
Sbjct: 276 AELVQAVKSMCEMRLREIFQDASHDKISRDTAVNEVRANVIDKVWSSYPDLDPAAIGEEF 335

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
            +   ++ R ++ +   R DGRD +++R I+ QV + +  HGS+LF RG TQ    V+L 
Sbjct: 336 NNACREIFRELIFESNRRCDGRDYDSLRKINCQVDMYKPLHGSALFQRGQTQVFCTVSLD 395

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + E    +D+L      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 396 SPESAMKLDTLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERSLL 455

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI+ P AG+A+GLV   
Sbjct: 456 PTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPITAPAAGVAIGLVTKY 513

Query: 471 D--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +        D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ
Sbjct: 514 ENNDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQ 573

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ M + + E R    +  P  E + + P Q   +IG  G  ++ I  +TG
Sbjct: 574 KATDAKSKILDIMGETIREPRKYRKDCWPVSENLVVEPHQRSQLIGPSGLHMKRIYLETG 633

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-----PEVNKIYKGQVVKVMDFGAFV 637
             +   DD    + + S A ++ A+EMI            E   IY   + ++ D G  V
Sbjct: 634 TTLTPSDDSNFTVFAPSQAAMDEAKEMIEGYMHKERVPDLEFGGIYTATITELRDTGVMV 693

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
               G    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 694 ILYPGMPPALLHNSQLDQRKIAHPSALGLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 750


>gi|282854618|ref|ZP_06263953.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J139]
 gi|282582200|gb|EFB87582.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J139]
 gi|314923878|gb|EFS87709.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL001PA1]
 gi|314966065|gb|EFT10164.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL082PA2]
 gi|314981898|gb|EFT25991.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA3]
 gi|315090762|gb|EFT62738.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA4]
 gi|315095011|gb|EFT66987.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL060PA1]
 gi|327328056|gb|EGE69825.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL103PA1]
          Length = 733

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/710 (38%), Positives = 413/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++    ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KFGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GPV G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPVGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRALADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYRALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNEAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|282866915|ref|ZP_06275947.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces sp. ACTE]
 gi|282558228|gb|EFB63798.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces sp. ACTE]
          Length = 737

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/709 (39%), Positives = 413/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    V
Sbjct: 76  AAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AASA+ +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G       
Sbjct: 136 VAINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKL--------AKMCA 226
            A++MVE EA + +  +V D         +  G    KP I+A+ K         AK   
Sbjct: 196 VAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKALCKAQSDLAAKAAKPTG 255

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           + P+ +D +D   + E ++  +  +L  +  I  K  R  ++D +K+             
Sbjct: 256 EFPVFLDYQD--DVLEALTGAVSTELAKALTIAGKQEREAELDRIKEIAAEKLLPAFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISGAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL
Sbjct: 433 RAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 ADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLM 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|239944720|ref|ZP_04696657.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
          Length = 737

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/709 (39%), Positives = 414/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  VM  + +    V
Sbjct: 76  AAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G       
Sbjct: 136 VAINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA +             +E++V   +       K + +A S LA   AK   
Sbjct: 196 VAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEG 255

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+ +D +D   + + +++ +  +L+ +  I  K  R  ++D +K+        E    
Sbjct: 256 DFPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL
Sbjct: 433 RAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 ADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLM 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|320008201|gb|ADW03051.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 737

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/709 (39%), Positives = 414/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 16  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQY 75

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  +M  + +    V
Sbjct: 76  AAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLYDV 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AASA+ +L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G       
Sbjct: 136 VAINAASASTILAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGD 195

Query: 183 DAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA +             +E+VV   +       K + +A S LA   AK   
Sbjct: 196 VAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKTLCKAQSDLAAKAAKPTG 255

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+ +D +D   + E +++ ++ +L  +  I  K  R  ++D +K+             
Sbjct: 256 EFPVFLDYQD--DVLEALTKAVRTELAKALTIAGKQEREAELDRIKEIAGEKLLPAFEG- 312

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 313 REKEISGAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 372

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA 
Sbjct: 373 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAE 432

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL
Sbjct: 433 RAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGL 492

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 493 ISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 552

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 553 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 611

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV   
Sbjct: 612 ADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLM 671

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 672 PGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 720


>gi|108799067|ref|YP_639264.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. MCS]
 gi|119868182|ref|YP_938134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. KMS]
 gi|126434670|ref|YP_001070361.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. JLS]
 gi|123178942|sp|Q1BA76|PNP_MYCSS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610288|sp|A3PY93|PNP_MYCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610289|sp|A1UET6|PNP_MYCSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108769486|gb|ABG08208.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. MCS]
 gi|119694271|gb|ABL91344.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. KMS]
 gi|126234470|gb|ABN97870.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. JLS]
          Length = 759

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/708 (40%), Positives = 418/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   + T++L+     +S KD  DFFPLT++ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKSPKDHFDFFPLTIDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  D +    VV
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPTFVSGLRNEIQVVVTVMSLDPKDLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA---- 184
           ++ AASA+  ++GLPF GPV G +V  I+G +V  P +++ +    D+ V+G + A    
Sbjct: 142 AINAASASTQIAGLPFSGPVGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKTADDVA 201

Query: 185 VLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           ++MVE EA               +E VV + +       K + EA  +LA   AK     
Sbjct: 202 IMMVEAEATDKVVELVAGGAQAPTEAVVAEGLEAAKPFIKVLCEAQQELAGRAAKP--TA 259

Query: 233 DSKDFSKLEE----EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           D   F +  E     ++ +  + L  +  I  K  R  + D++K +++   + + +   E
Sbjct: 260 DYPLFPEYGEDVYYAVASVATDALSEALTIAGKEERNNRTDEIKVEVLGRLADQFAG-RE 318

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            EI   F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+TQ 
Sbjct: 319 KEIGGAFRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAIVPRAHGSALFERGETQI 378

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 379 LGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERA 438

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV 
Sbjct: 439 LMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVS 498

Query: 469 DGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   ++  A
Sbjct: 499 DDVEVDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQVLAGA 558

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  R+ IL  M++ +     ++  + PR+  + +P D+I  VIG  GK+I  I E+
Sbjct: 559 LAQAKDARITILEVMAEAIDAP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSITEE 617

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA ++I+DDGTV + +S+    +AA + I +I    +P++ + + G VVK  DFGAFV 
Sbjct: 618 TGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKIGERFLGTVVKTTDFGAFVS 677

Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
               RDGLVHIS+L   +R+AK  DV K GD + V++ D D+RGKI L
Sbjct: 678 LLPGRDGLVHISKLGRGKRIAKVEDVAKVGDKLRVEIADIDNRGKISL 725


>gi|227488675|ref|ZP_03918991.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091336|gb|EEI26648.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 745

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/716 (39%), Positives = 422/716 (58%), Gaps = 41/716 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DG+V A    +T++LAT     + ++G DFFPLTV+ +ER Y
Sbjct: 25  DFGTRTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMY 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+ + IL  R+IDR +RP F K  +NE Q +I VM  D      V
Sbjct: 85  AKGKIPGSFFRREGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFYDV 144

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++ AASAA  LSGLP  G V G ++  I      +GQ+V  P +++ + +L ++ V+G 
Sbjct: 145 VAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVAGR 204

Query: 182 --------QDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKL 221
                     A++MVE  A +             +E VV + +         +  A  +L
Sbjct: 205 RVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQDQL 264

Query: 222 AKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           +K+ AK+            ++ E +     + +     IP K  R     +   ++V   
Sbjct: 265 SKLAAKDKKEFPIFPDYTDEILEAVRTSASKKIGEIMSIPGKQERDTATAEHMDQVVEKL 324

Query: 280 S---SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
                E     E +I + +  +  ++VR  +L +  R+DGRD + +RD+S +V L+ R H
Sbjct: 325 LPKFEEEDETAEKKIRAAYNAVTKEIVRHRILTEGFRIDGRDVKQIRDLSVEVELVPRAH 384

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS+LF RG+TQ + V TL   + EQ +DSLS      ++ HYNF P +TGE  R+G+P R
Sbjct: 385 GSALFERGETQILGVTTLDMLKMEQQIDSLSPVTSKRYIHHYNFPPYSTGETGRVGSPKR 444

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+ 
Sbjct: 445 REIGHGALAERALLPVIPSKEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLK 504

Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI
Sbjct: 505 APVAGIAMGLVSDKIDGKMHYTALTDILGAEDAFGDMDFKVAGTSEIVTALQLDTKLDGI 564

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             N++  ALQQA   RL IL+ M++V+ E   ++ +F PR+  + +P  +I  VIG  GK
Sbjct: 565 PSNVLAAALQQAHEARLEILDTMAQVIEEP-DEMSDFAPRITSIKVPVSKIGEVIGPKGK 623

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKV 630
            I  I E+TGA V+I++DGTV +++++ A  +AA E I ++    +P+V + + G VVK+
Sbjct: 624 NINAITEETGADVSIEEDGTVYVSATTGAAADAAIEKINAVANPQMPKVGERFLGTVVKI 683

Query: 631 MDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +FGAFV     RDGL+HIS+L   +R+ K  DV+  G+ V V++ D D+RGKI L
Sbjct: 684 ANFGAFVSILPGRDGLIHISKLGGKKRIEKVEDVINVGEKVEVEIADIDNRGKISL 739


>gi|291448178|ref|ZP_06587568.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351125|gb|EFE78029.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
          Length = 742

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/709 (39%), Positives = 414/709 (58%), Gaps = 37/709 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
            +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER Y
Sbjct: 21  TFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQY 80

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE Q++  VM  + +    V
Sbjct: 81  AAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLYDV 140

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+   +V  I GQ+V  P   E +    D+ V+G       
Sbjct: 141 VAINAASCSTQLAGLPFSGPIGATRVALIKGQWVAFPTHTELEDAVFDMVVAGRVLEDGD 200

Query: 183 DAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE EA +             +E++V   +       K + +A S LA   AK   
Sbjct: 201 VAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLCKAQSDLASKAAKPEG 260

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+ +D +D   + + +++ +  +L+ +  I  K  R  ++D +K+        E    
Sbjct: 261 DFPVFLDYQD--DVLDALAKAVTPELKQALTIAGKQERETELDRVKEIAAEKLLPEFEG- 317

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI + +  +  K+VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+T
Sbjct: 318 REKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGET 377

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA 
Sbjct: 378 QILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAE 437

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+   VAGIAMGL
Sbjct: 438 RAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGL 497

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+
Sbjct: 498 ISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKQFVTALQLDTKLDGIPASVLAAALK 557

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RLHIL+ M++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TG
Sbjct: 558 QARDARLHILDVMNEAIDVP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTG 616

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + I+DDGT+ I +   ++ EAAR  I +I +  +PEV + Y G VVK   FGAFV   
Sbjct: 617 ADITIEDDGTIYIGAQQGSQAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLM 676

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 677 PGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL 725


>gi|296171645|ref|ZP_06852859.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894006|gb|EFG73769.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 751

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/708 (39%), Positives = 416/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   +  ++L+     ++ K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTILSLDPNDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD----A 184
           ++ AASA+  +SGLPF GP+ G +V  I+G +V  P +++ +    D+ V+G +     A
Sbjct: 142 AINAASASTQISGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDDDVA 201

Query: 185 VLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           ++MVE EA               +E VV + +         +  A  +LA   AK   V 
Sbjct: 202 IMMVEAEATDKVIELVEGGAQAPTETVVAEGLEAAKPFINVLCTAQQELADAAAKP--VG 259

Query: 233 DSKDFSKLEEEM----SQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           +   F   +E++    + +  ++L  +  I  K  R  + D+LK ++++  +  +    E
Sbjct: 260 EYPTFPDYQEDVYYSVAAVATDELAKALTIGGKAERDARTDELKAEVLTRLAETYEG-RE 318

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+TQ 
Sbjct: 319 KEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQI 378

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 379 LGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAERA 438

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAMGLV 
Sbjct: 439 LLPVLPGVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVS 498

Query: 469 DGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   ++  A
Sbjct: 499 DDVEVDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQVLAGA 558

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  RL IL  M++ +     ++  + PRV  + +P D+I  VIG  GK+I  I E+
Sbjct: 559 LAQAKDARLTILEVMAEAIDAP-DEMSPYAPRVTTIKVPVDKIGEVIGPKGKIINAITEE 617

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK  DFGAFV 
Sbjct: 618 TGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLGTVVKTTDFGAFVS 677

Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
               RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 678 LLPGRDGLVHISKLGRGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 725


>gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 958

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/706 (38%), Positives = 415/706 (58%), Gaps = 16/706 (2%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E   + + LETG IAR ++GAV+ +  +T VL+TV   +     +DF PLTV+
Sbjct: 53  ETFKEEFEIGSQVISLETGEIARFANGAVVLSMDQTKVLSTVTSSK-GDAVRDFLPLTVD 111

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ +A G IP  ++RRE  P E E+L  R+IDR IRPLF+  + +E QV+ +V+  D 
Sbjct: 112 YQEKQFAQGVIPNTFMRREGAPKERELLCGRLIDRPIRPLFAPGFYHEVQVMASVLSSDG 171

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           +  P V++  A SAALMLS +P+ GP+   ++  I GQ+++NP +DE     L+L  + T
Sbjct: 172 KQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRIGGQFIVNPTMDELSLSDLNLVYACT 231

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
           +D  LM++++A ++SE  +  A+   H E    +E   +LA    K+         S+ +
Sbjct: 232 KDKTLMIDVQAREISEKDLEAALRLAHPEAVKYLEPQIRLAAKAGKDKKDYKLSMVSERI 291

Query: 241 EEEMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            E++  + +  +  + F      K+ R + +D++ + +      E    +   +    + 
Sbjct: 292 LEKVRNLAETQI-EAVFTDSSYGKFERGEALDNITQDVKRTLEEECDEESLNVLRKAVDT 350

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++ +VVR  ++ +  R+DGR  + VR +  + G L   HGSSLF RGDTQ +  VTLG  
Sbjct: 351 VRKQVVRRRIISEGFRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAP 410

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q ++SL G     FM+HY+F P +  EV +    +RRE+GHG LA +A+  VLP   
Sbjct: 411 GDAQRLESLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPED 470

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD------ 471
            FPYT+RI SE+  SDGS+SMATVCG S+ALMDAG+P+ + VAG+++GLV + D      
Sbjct: 471 DFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDPSTGEI 530

Query: 472 -DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            D+ +L+DI G EDHLG MDFK+AGT +G+TA+Q+D+K  GI  +I+   L  A +GRL 
Sbjct: 531 KDYRVLTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICECLDHALKGRLQ 590

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL+ M + ++  R Q+ +  PR+       D +R +IG  G + R I E+TGA+++I D 
Sbjct: 591 ILDHMEQEINVPRTQVDKTRPRLATFKFSNDTLRQLIGPLGVLKRKIEEETGARLSISD- 649

Query: 591 GTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           G + + + + A ++  +E I  I     E   +YKG V  + ++GAF+ F G + GL+HI
Sbjct: 650 GMLTVGAKNQAVMDKVQEKIDFIIGCEIETGGVYKGIVTSIKEYGAFIQFNGGQQGLLHI 709

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S+LS E V+K SDVV  G  + +  +  D RG IKLS+K      G
Sbjct: 710 SELSHEPVSKVSDVVSVGQQLSLMCIGQDVRGNIKLSLKATSPPLG 755


>gi|50842950|ref|YP_056177.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
           KPA171202]
 gi|289426541|ref|ZP_06428284.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289428637|ref|ZP_06430320.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J165]
 gi|81611463|sp|Q6A7P6|PNP_PROAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50840552|gb|AAT83219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           KPA171202]
 gi|289153269|gb|EFD01987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289158035|gb|EFD06255.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J165]
 gi|313763615|gb|EFS34979.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL013PA1]
 gi|313794010|gb|EFS42034.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA1]
 gi|313801396|gb|EFS42647.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA2]
 gi|313807924|gb|EFS46405.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA2]
 gi|313813334|gb|EFS51048.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL025PA1]
 gi|313816795|gb|EFS54509.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL059PA1]
 gi|313819709|gb|EFS57423.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL046PA2]
 gi|313822184|gb|EFS59898.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA1]
 gi|313823581|gb|EFS61295.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA2]
 gi|313825906|gb|EFS63620.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL063PA1]
 gi|313829586|gb|EFS67300.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL063PA2]
 gi|313839882|gb|EFS77596.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL086PA1]
 gi|314914770|gb|EFS78601.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA4]
 gi|314919268|gb|EFS83099.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA1]
 gi|314920821|gb|EFS84652.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA3]
 gi|314924673|gb|EFS88504.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA3]
 gi|314930500|gb|EFS94331.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL067PA1]
 gi|314957473|gb|EFT01576.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA1]
 gi|314962057|gb|EFT06158.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA2]
 gi|314963636|gb|EFT07736.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL082PA1]
 gi|314968532|gb|EFT12630.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA1]
 gi|314978848|gb|EFT22942.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL072PA2]
 gi|314986493|gb|EFT30585.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA2]
 gi|314990852|gb|EFT34943.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA3]
 gi|315079490|gb|EFT51483.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL053PA2]
 gi|315081283|gb|EFT53259.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL078PA1]
 gi|315083481|gb|EFT55457.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL027PA2]
 gi|315087167|gb|EFT59143.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA3]
 gi|315089337|gb|EFT61313.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL072PA1]
 gi|315099243|gb|EFT71219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL059PA2]
 gi|315100450|gb|EFT72426.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL046PA1]
 gi|315109042|gb|EFT81018.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL030PA2]
 gi|327329757|gb|EGE71513.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL096PA3]
 gi|327334275|gb|EGE75989.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL097PA1]
 gi|327446443|gb|EGE93097.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL013PA2]
 gi|327451969|gb|EGE98623.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL092PA1]
 gi|327454994|gb|EGF01649.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA3]
 gi|327457717|gb|EGF04372.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL083PA2]
 gi|328752198|gb|EGF65814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL020PA1]
 gi|328755172|gb|EGF68788.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA1]
 gi|328758348|gb|EGF71964.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL025PA2]
          Length = 733

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/710 (38%), Positives = 413/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +     ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KLGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNEAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM
           13855]
 gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM
           13855]
          Length = 722

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/709 (41%), Positives = 447/709 (63%), Gaps = 18/709 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           + H  +IE+   R L LETGRIA+Q+DG+V+A  G+T+VL+T     S+ +  +FFPLTV
Sbjct: 14  EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 72

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF   + ++  V+  V+   
Sbjct: 73  DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 132

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +    V++ V +SAALMLSG PF GP    +V  ++G Y++NP + + ++  +DL V+G
Sbjct: 133 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 192

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            +DA++MVE EA ++SE+ +++A+   H   + + E   +L +   +        D  ++
Sbjct: 193 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQAGEPDPFEWEAD--RV 250

Query: 241 EEEMSQMIKEDL--RVSCFIPE---KYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EI 291
            E++ Q ++E+   +V+  I     K      I DLK + V     + S   EG    +I
Sbjct: 251 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 310

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                +++   +R +++++  R+DGRD   VRD+  +VG L R HGS++F RG+TQ +  
Sbjct: 311 RDAIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 370

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT +D Q VD +       F +HY F P + GE S +  P RREIGH  LA RA+ P
Sbjct: 371 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 430

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+  +FPYT+RI +++ ES+GSSSMA+VC  SLALMDAGVPI KPVAGIAMGLV++ D
Sbjct: 431 VIPEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 490

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G EDHLG MDFK+ GT  GITA QMDMKI G+S ++M+ AL+Q++  R HI
Sbjct: 491 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 550

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L+ M + ++E R +L    PR+  + I PD+I  VIG GGKV++ + E+T  ++ ++++ 
Sbjct: 551 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 610

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V IA+++  + EAA E I+ I  VPE  + Y G V  + DFGAFV     + GL+H
Sbjct: 611 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 670

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGK 696
           +S++  + V    D ++ GD V V LL+  D GK++L+ K  V +  G+
Sbjct: 671 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRKPFVSEENGE 719


>gi|315104236|gb|EFT76212.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA2]
          Length = 733

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/710 (38%), Positives = 413/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++    ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KFGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ +AS +  L+GLPF GPV G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINSASMSTQLAGLPFSGPVGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRALADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYRALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNEAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|311739667|ref|ZP_07713502.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305483|gb|EFQ81551.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 748

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/717 (39%), Positives = 407/717 (56%), Gaps = 42/717 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG++ARQ+DG+V     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 28  DFGTRTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMY 87

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ VM  D E    V
Sbjct: 88  AAGKIPGSFFRREGRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYYDV 147

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 148 VAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAGR 207

Query: 182 --------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKL 221
                     A++MVE  A     + + D         +  G    KP I    EA + L
Sbjct: 208 IVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEATVAEGLEAAKPFIKTLCEAQNGL 267

Query: 222 AKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           A+  AKE             +   + +   + L     IP K  R    ++  +++    
Sbjct: 268 AERAAKETQEFPLFPAYGDDVFAAVEKAAAKKLEKLLTIPGKQERDDATNEYMEQVEEKL 327

Query: 280 SSEHSSWNEGE----IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
             +     E +    I   +  +  ++VR  +L +  R+DGR    +RD+S +V L+ R 
Sbjct: 328 LDQFEDLEEADASKQIRGAYNALMKQIVRQKILSEGFRIDGRGVTDIRDLSVEVDLVPRA 387

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+P 
Sbjct: 388 HGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVESKRYMHHYNFPPFSTGETGRVGSPK 447

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP+
Sbjct: 448 RREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPL 507

Query: 456 SKPVAGIAMGLVKDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGLV       + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G
Sbjct: 508 KAPVAGIAMGLVSGEVNGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLDG 567

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL+QA+  R  IL  M++V+     ++    P++  + IP ++I  +IG  G
Sbjct: 568 IPSKVLAQALEQARDARSTILETMAEVIDTP-DEMSGLAPKITSVKIPVNKIGELIGPKG 626

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           K I  I E+TGA V+I+DDGTV +++++    +AA + + SI    +P+V + + G VVK
Sbjct: 627 KTINQITEETGADVSIEDDGTVYVSAATGEAADAAIDKVNSIANPQLPKVGERFLGTVVK 686

Query: 630 VMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            + FGAFV     RDGL+HIS L   ER+ K  DV+  GD V V++ D D+RGKI L
Sbjct: 687 TVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVINVGDKVQVEIADIDNRGKISL 743


>gi|227542327|ref|ZP_03972376.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181927|gb|EEI62899.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 749

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/716 (39%), Positives = 421/716 (58%), Gaps = 41/716 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DG+V A    +T++LAT     + ++G DFFPLTV+ +ER Y
Sbjct: 29  DFGTRTIRFETGQLARQADGSVTAYLDEDTMMLATTTASNNPREGFDFFPLTVDVEERMY 88

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+ + IL  R+IDR +RP F K  +NE Q +I VM  D      V
Sbjct: 89  AKGKIPGSFFRREGRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNEFYDV 148

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++ AASAA  LSGLP  G V G ++  I      +GQ+V  P +++ + +L ++ V+G 
Sbjct: 149 VAINAASAATQLSGLPVSGAVGGVRMALIADEDHKDGQWVAFPNVEQHEAALFEMVVAGR 208

Query: 182 --------QDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKL 221
                     A++MVE  A +             +E VV + +         +  A  +L
Sbjct: 209 RVKKGKKNDVAIMMVEAGATEGVIERVADGAPAPTESVVAEGLEAAKPFIDTLCRAQDQL 268

Query: 222 AKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           +K+ AK+            ++ E +     + +     IP K  R     +   ++V   
Sbjct: 269 SKLAAKDKKEFPIFPDYTDEILEAVRTSASKKIGEIMSIPGKQERDTATAEHMDQVVEKL 328

Query: 280 S---SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
                E     E +I + +  +  ++VR  +L +  R+DGRD + +RD+S +V L+ R H
Sbjct: 329 LPKFEEEDETAEKKIRAAYNAVTKEIVRHRILTEGFRIDGRDVKQIRDLSVEVELVPRAH 388

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS+LF RG+TQ + V TL   + EQ +DSLS      ++ HYNF P +TGE  R+G+P R
Sbjct: 389 GSALFERGETQILGVTTLDMLKMEQQIDSLSPVTSKRYIHHYNFPPYSTGETGRVGSPKR 448

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+ 
Sbjct: 449 REIGHGALAERALLPVIPSKEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLK 508

Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PV GIAMGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI
Sbjct: 509 APVTGIAMGLVSDKIDGKMHYTALTDILGAEDAFGDMDFKVAGTSEIVTALQLDTKLDGI 568

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             N++  ALQQA   RL IL+ M++V+ E   ++ +F PR+  + +P  +I  VIG  GK
Sbjct: 569 PSNVLAAALQQAHEARLEILDTMAQVIEEP-DEMSDFAPRITSIKVPVSKIGEVIGPKGK 627

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKV 630
            I  I E+TGA V+I++DGTV +++++ A  +AA E I ++    +P+V + + G VVK+
Sbjct: 628 NINAITEETGADVSIEEDGTVYVSATTGAAADAAIEKINAVANPQMPKVGERFLGTVVKI 687

Query: 631 MDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +FGAFV     RDGL+HIS+L   +R+ K  DV+  G+ V V++ D D+RGKI L
Sbjct: 688 ANFGAFVSILPGRDGLIHISKLGGKKRIEKVEDVINVGEKVEVEIADIDNRGKISL 743


>gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 712

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/709 (41%), Positives = 447/709 (63%), Gaps = 18/709 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           + H  +IE+   R L LETGRIA+Q+DG+V+A  G+T+VL+T     S+ +  +FFPLTV
Sbjct: 4   EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A GK+PGG+++RE RPT+ E L SR+IDR+IRPLF   + ++  V+  V+   
Sbjct: 63  DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +    V++ V +SAALMLSG PF GP    +V  ++G Y++NP + + ++  +DL V+G
Sbjct: 123 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            +DA++MVE EA ++SE+ +++A+   H   + + E   +L +   +        D  ++
Sbjct: 183 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQAGEPDPFEWEAD--RV 240

Query: 241 EEEMSQMIKEDL--RVSCFIPE---KYVRCKQIDDLKKKMVSYFSSEHSSWNEG----EI 291
            E++ Q ++E+   +V+  I     K      I DLK + V     + S   EG    +I
Sbjct: 241 PEQLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDI 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                +++   +R +++++  R+DGRD   VRD+  +VG L R HGS++F RG+TQ +  
Sbjct: 301 RDAIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGS 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           +TLGT +D Q VD +       F +HY F P + GE S +  P RREIGH  LA RA+ P
Sbjct: 361 ITLGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRP 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P+  +FPYT+RI +++ ES+GSSSMA+VC  SLALMDAGVPI KPVAGIAMGLV++ D
Sbjct: 421 VIPEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD 480

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +L+DI G EDHLG MDFK+ GT  GITA QMDMKI G+S ++M+ AL+Q++  R HI
Sbjct: 481 ETTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHI 540

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD- 590
           L+ M + ++E R +L    PR+  + I PD+I  VIG GGKV++ + E+T  ++ ++++ 
Sbjct: 541 LDRMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEE 600

Query: 591 --GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
             G V IA+++  + EAA E I+ I  VPE  + Y G V  + DFGAFV     + GL+H
Sbjct: 601 GVGIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLH 660

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV-VDQNTGK 696
           +S++  + V    D ++ GD V V LL+  D GK++L+ K  V +  G+
Sbjct: 661 VSEIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRKPFVSEENGE 709


>gi|317125320|ref|YP_004099432.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589408|gb|ADU48705.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 747

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/708 (40%), Positives = 420/708 (59%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A    +T++++T    ++ KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRKVRFETGRLAKQAGGAVVAYLDEDTMIMSTTSAGKTPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           +GKIPG + RRE RPT + IL  R+IDR +RP F K  +NE QVII+V   + +    V+
Sbjct: 78  IGKIPGSFFRREGRPTTDAILTCRLIDRPLRPTFKKGLRNEVQVIISVFALNPDHQYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++ AASA+  +SGLPF GPV G +V  I+GQ+V  P   + ++   D+ V+G       A
Sbjct: 138 AINAASASTQISGLPFSGPVGGVRVSLIDGQWVAFPNFSDIERSVFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           ++MVE E+   + D+V          + +  G    K  I+ + +          K   +
Sbjct: 198 IMMVEAESTDSTWDLVKNEGKQAPTEEVVAEGLESSKKFIKVLCEAQAELAARAAKPVEE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   +   +   +  D   +  I  K  R  ++D++K  + +  + +     
Sbjct: 258 FPVFLDYED--DVFAAVESAVSADTAAALTIAGKTEREDRLDEIKAAVKAQLAGQFEG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + F  +Q K+VR  +L  KVR+DGR    +R + A+V +L R HGS++F RG+TQ
Sbjct: 315 EKEISAAFRSVQKKLVRQRILRDKVRIDGRGLADIRALGAEVEVLPRVHGSAIFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL   + EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 IMGVTTLNMLKMEQQLDTLSPQTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV
Sbjct: 435 ALMPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLV 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  AL Q
Sbjct: 495 SDEVDGETRYAALTDILGAEDAFGDMDFKVAGTKEFVTAIQLDTKLDGIPATVLAGALTQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M++ +     ++  + PR+  + +P D+I  VIG  GK+I  I + TGA
Sbjct: 555 ARDARLHILDVMAEAIDVP-DEMSPYAPRIITVKVPVDKIGEVIGPKGKMINQIQDDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I +      EAAR  I +I    +PEV + + G VVK   FGAFV    
Sbjct: 614 DISIEDDGTVFIGAVDGPSAEAARAAINAIANPTMPEVGERFLGTVVKTTTFGAFVSLLP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HIS++      +R+    DVVK G  + V+L + D RGK+ L
Sbjct: 674 GKDGLLHISEVRKLVGGKRIDNVDDVVKIGQKIQVELKEIDPRGKLSL 721


>gi|89889343|ref|ZP_01200854.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           BBFL7]
 gi|89517616|gb|EAS20272.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           BBFL7]
          Length = 748

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/686 (41%), Positives = 426/686 (62%), Gaps = 11/686 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G  + +ETG +A+Q+ G+V+ T G+ ++L TVV       G DF PLTV+Y+E+  A G
Sbjct: 14  NGPDITIETGALAKQAHGSVVITCGKAMLLGTVVSSYK-STGLDFLPLTVDYREKFAAAG 72

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           K PGG+ +RE+RP + E+L  R++DR +RPLF K Y  E QV+I +M HD E  P  ++ 
Sbjct: 73  KYPGGFFKREARPNDGEVLTMRLVDRVLRPLFPKDYHAEVQVMIQLMSHDPEVMPDAMAG 132

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDAVLMVEL 190
           +AASAA+ LS LPFE  +   +V  ++G++V+NP   + +   L++ +  + D+V+MVE 
Sbjct: 133 LAASAAIQLSDLPFECAISEVRVARVDGEFVINPSYAQLEAADLEMMIGASADSVMMVEG 192

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQMI 248
           E  ++SE+ ++ AI   H   K    A   LA+   K+ +      K+ + +E +++++ 
Sbjct: 193 EMEEISEEEMIAAIKAAHEAIKDQCAAQIALAEQVGKKEVREYEGEKEDADIEAKVAELA 252

Query: 249 KEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
            + +   +     K+ R     ++K+++ + FS E  + N   I   F     K VR V+
Sbjct: 253 YQKVYDVAQKGSAKHERSAAFSEIKEEIKATFSEEDQAENGDLISKYFNKTHKKAVRDVL 312

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L++ +R+DGR +  +RDI  +V  L  THGS++F RG+TQA+  VTLGT  D   +D  S
Sbjct: 313 LNEGIRLDGRKTTDIRDIWCEVDYLPSTHGSAIFSRGETQALATVTLGTSRDANVIDMAS 372

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 F +HYNF P +TGE   +   SRREIGHG LA+RA+  +LP     PYT+R+VS
Sbjct: 373 QEGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKNMLP--EDLPYTVRVVS 430

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ ES+GSSSMATVC  ++A+MDAG+P+ KPV+GIAMGL+ DGD + +LSDI GDEDHLG
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGLPMKKPVSGIAMGLITDGDKYAVLSDILGDEDHLG 490

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKV GT+ GITA QMD+K+ G+S  I+  AL QA+ GR+HIL +++  ++     + 
Sbjct: 491 DMDFKVTGTEDGITACQMDIKVKGLSYEILTNALMQARDGRMHILGKLTDTIAAPAADVK 550

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT---VKIASSSLAEIE 604
              P++E M I    I  VIG GGKVI+ + ++T   +NI +DG    ++IA +  A+IE
Sbjct: 551 PHAPKMESMEIEGKYIGAVIGPGGKVIQEMQKETETVINIKEDGEMGIIEIAGTDRAKIE 610

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA E I +I   P V  +Y+ +VVK++DFGA V F   ++ L+H+S+   +R+   S V+
Sbjct: 611 AALEKISNIIFEPVVGSVYEVKVVKMLDFGAVVEFKPGKETLLHVSEFDYKRIEDPSTVL 670

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMKV 689
           K GD + VK +  D R  K K+S K 
Sbjct: 671 KVGDVLDVKYMGVDPRTKKQKVSRKE 696


>gi|313811605|gb|EFS49319.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL083PA1]
          Length = 733

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/721 (38%), Positives = 418/721 (57%), Gaps = 38/721 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +     ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KLGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAVKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNEAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L +   + +T 
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSLVLASDEDDTD 732

Query: 696 K 696
           +
Sbjct: 733 E 733


>gi|325962822|ref|YP_004240728.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468909|gb|ADX72594.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 767

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/712 (38%), Positives = 412/712 (57%), Gaps = 41/712 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    + T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 32  FGKRVIRFETGRLAKQAAGAAMVYIDDDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 91

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 92  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPDELYDVV 151

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQ----YVLNPRLDEDQGS-LDLFVSGT--- 181
           ++ A+S +  LSGLPF GP+ G +V  +  +    +V  P+  + + S  ++ V+G    
Sbjct: 152 AINASSMSTQLSGLPFSGPIGGVRVALVADENGSQWVAFPKHSQLENSVFNMVVAGRIAG 211

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   S +++          + +  G    KP I+A+ +          K
Sbjct: 212 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCEAQADLAARAAK 271

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+ +D +D   +   +     + L     I +K  R    D LK ++ +  + + 
Sbjct: 272 PTVEFPVFLDYED--DVYAAVESAAADKLAAVFQIADKQERDNASDALKDEVTASLAGQF 329

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F  +   VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F R
Sbjct: 330 EG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 388

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLS  +   +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 389 GETQIMGVTTLNMLKMEQQIDSLSPVKTKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 448

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAGIA
Sbjct: 449 LAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 508

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 509 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 568

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E
Sbjct: 569 ALKQAREARLHILEVINSAIDTP-DELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 627

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +++    EAAR  I +I    VPE+ + Y G VVK   FGAFV
Sbjct: 628 DTGADISIEDDGTVYIGATNGPSAEAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFV 687

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HIS+L      +RV    DVV  G  V V++   DDRGK+ L
Sbjct: 688 SLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSL 739


>gi|314954342|gb|EFS98748.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL027PA1]
          Length = 733

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/710 (38%), Positives = 413/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +     ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KLGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPENPRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNEAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|11514054|pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
           Gpsi Enzyme
          Length = 757

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/708 (39%), Positives = 408/708 (57%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 34  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 93

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 94  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 153

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 154 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 213

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAK--------MCAK 227
           A++MVE EA + +  +V D         +  G +  KP I+ + K              +
Sbjct: 214 AIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 273

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E +S  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 274 FPVFLDYQD--DVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-R 330

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 331 EKEISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 390

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 391 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 450

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 451 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 510

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              +     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 511 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 570

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG   ++I  I E TGA
Sbjct: 571 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGA 629

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +   PEV +   G VVK   FGAFV    
Sbjct: 630 EITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLP 689

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 690 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737


>gi|313836842|gb|EFS74556.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA2]
 gi|314972179|gb|EFT16276.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA3]
          Length = 735

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/710 (38%), Positives = 411/710 (57%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++    ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFF LTV+ +ER Y
Sbjct: 17  KFGRHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFLLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E E+   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEVSGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPETSRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M+  +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNDAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           G  ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GTNISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|315106802|gb|EFT78778.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL030PA1]
          Length = 733

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/710 (38%), Positives = 412/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +     ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KLGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAAKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +      +    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNEAIDSPDG-MAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|41408989|ref|NP_961825.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|81413535|sp|Q73VX0|PNP_MYCPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|41397348|gb|AAS05208.1| GpsI [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 757

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/717 (39%), Positives = 416/717 (58%), Gaps = 46/717 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   +  ++L+     +S K+  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLAQQAAGAVVAYLDDENMLLSATTASKSPKEHFDFFPLTVDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ ++  D      V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPNDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD----- 183
           ++ AASA+  L GLPF GP+ G +V  I+G +V  P +++ +    D+ V+G +      
Sbjct: 142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMVVAGRKVDGADG 201

Query: 184 ---AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----AISKLAKMCAKE 228
              A++MVE EA     +++           +  G    KP IE    A  +LA   A+ 
Sbjct: 202 PDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQGLEAAKPFIEVLCTAQQELADKAARP 261

Query: 229 ----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
               P   D  D   +   ++ +  ++L  +  I  K  R  + D+LK ++++  +  + 
Sbjct: 262 TSDYPTFPDYGD--DVYYSVASVATDELSKALTIGGKAERDARTDELKAEVLARLAETYE 319

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
              E E+ + F  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG
Sbjct: 320 G-REKEVSAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFQRG 378

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG L
Sbjct: 379 ETQILGVTTLDMVKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRVGSPKRREIGHGAL 438

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  PVAGIAM
Sbjct: 439 AERALVPVLPSLEDFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAM 498

Query: 465 GLVKDGDD-------------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           GLV D  +             F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ G
Sbjct: 499 GLVSDDIEVEAGDGTKSLERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDG 558

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   ++  AL QAK  RL IL  M++ + E   ++  + PRV  + +P D+I  VIG  G
Sbjct: 559 IPSQVLAGALSQAKDARLTILEVMAEAIDEP-DEMSPYAPRVTTIRVPVDKIGEVIGPKG 617

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           K+I  I E+TGA+++I+DDGTV + ++     +AA + I +I    +P V + + G VVK
Sbjct: 618 KIINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDRINAIANPQLPTVGERFLGTVVK 677

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             DFGAFV     RDGLVHIS+L   +R+AK  DVV  GD + V++ D D RGKI L
Sbjct: 678 TTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 734


>gi|295131021|ref|YP_003581684.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|291376503|gb|ADE00358.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|313773552|gb|EFS39518.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL074PA1]
 gi|313831348|gb|EFS69062.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL007PA1]
 gi|313834958|gb|EFS72672.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL056PA1]
 gi|314974222|gb|EFT18318.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL053PA1]
 gi|314976667|gb|EFT20762.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL045PA1]
 gi|314984307|gb|EFT28399.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA1]
 gi|315095362|gb|EFT67338.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL038PA1]
 gi|327328376|gb|EGE70138.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327444160|gb|EGE90814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL043PA2]
 gi|327444959|gb|EGE91613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL043PA1]
 gi|328760033|gb|EGF73613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL099PA1]
          Length = 733

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/710 (38%), Positives = 413/710 (58%), Gaps = 38/710 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           +     ++ E G +A+Q+DG+      G+T++L+     ++ +D  DFFPLTV+ +ER Y
Sbjct: 17  KLGKHVVRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+E  IL  R+IDR +RP F K  +NE QV++ VM  +      V
Sbjct: 77  AAGRIPGSFFRREGRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-----Q 182
           V++ AAS +  L+GLPF GP+ G ++  I+ Q+V  P +D+  + + D+ V+G       
Sbjct: 137 VAINAASMSTQLAGLPFSGPIGGVRMALIDDQWVCFPSVDQRKESTFDMVVAGRVLADGD 196

Query: 183 DAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-- 228
            A++MVE E+               +E+VV   +       K + +A   LA    KE  
Sbjct: 197 VAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDAQVALAVKLPKETY 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
             P+  D +D   +   + +   ++L     I  K  R +   +LK ++ +  +      
Sbjct: 257 DFPVFKDYED--DVYAAVEEKAADELSRIEQIAAKLERQEAESELKARIKAELAETFPE- 313

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
            E EI   F+ +  K+VR  +LD+ VR+DGR    +R +SA+VG++ R HGS+LF RG+T
Sbjct: 314 REAEISGAFKAVMKKIVRKRVLDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGET 373

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL   + EQ +D+LS      +M +YN  P +TGE  R+G+P RREIGHG LA 
Sbjct: 374 QILGVSTLNMLDMEQKLDTLSPENTRRYMHNYNMPPYSTGETGRVGSPKRREIGHGNLAE 433

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+   VAGIAMGL
Sbjct: 434 RALIPVLPTREEFPYAIREVSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGL 493

Query: 467 VKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + + D+     ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL
Sbjct: 494 MSETDEDGKTKYLALTDILGAEDALGDMDFKVAGTSEFVTALQLDTKLDGIPADVLAGAL 553

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           +QAK  R  IL  M++ +     ++    PR+  + IP D+I  VIG  GK+I  I + T
Sbjct: 554 KQAKEARTAILEVMNEAIDSP-DEMAPTAPRIITVHIPVDKIGEVIGPKGKMINQIQDDT 612

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHF 639
           GA ++I+DDGT+ I + +    E+AR MI +I    +PEV + Y G VVK   FGAFV  
Sbjct: 613 GANISIEDDGTIFIGADNGDSAESARSMINAIANPQMPEVGERYLGTVVKTTSFGAFVSL 672

Query: 640 CGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              +DGL+HIS++      +RV    DV+  G  + V++ + DDRGK+ L
Sbjct: 673 LPGKDGLLHISKMRDLNDGKRVEAVEDVLSVGQKIQVEIAEVDDRGKLSL 722


>gi|120403341|ref|YP_953170.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           vanbaalenii PYR-1]
 gi|187610302|sp|A1T7L4|PNP_MYCVP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119956159|gb|ABM13164.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 754

 Score =  656 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/720 (38%), Positives = 422/720 (58%), Gaps = 40/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ E GR+A+Q+ GAV+A   + T++L+     +S K+  DFFPLT++ +ER YA
Sbjct: 22  FGTRTIRFEAGRLAQQAAGAVVAYLDDETMLLSATTASKSPKEHFDFFPLTIDVEERMYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    V+
Sbjct: 82  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLDPKDLYDVL 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD----- 183
           ++ AASA+  +SGLPF GPV G +V  I+GQ+V  P +++ +    D+ V+G +      
Sbjct: 142 AINAASASTQISGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFDMVVAGRKVGDDHK 201

Query: 184 --AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLA--------KMC 225
             A++MVE EA +   ++V           +  G    KP I  +            K  
Sbjct: 202 DVAIMMVEAEATENVIELVAGGAGAPTETVVAEGLEAAKPFIAVLCDAQAALAGAAGKET 261

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
           A+ P+  D  D   +   ++ +  E L  +  I  K  R  + D++K ++++  + +++ 
Sbjct: 262 AEYPLFPDYGD--DVYYSVASVATEALSEALTIAGKNERNDRTDEIKVEVLNRLAEQYAG 319

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E EI + +  +  K+VR  +L    R+DGR    +R +SA+V ++ R HGS+LF RG+
Sbjct: 320 -REKEIGAAYRSLTKKLVRQRILTDHFRIDGRGVTDIRALSAEVAVVPRAHGSALFERGE 378

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL   +  Q +DSL       +M HYNF P +TGE  R+G+P RREIGHG LA
Sbjct: 379 TQIMGVTTLDMVKMAQQIDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALA 438

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMG
Sbjct: 439 ERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG 498

Query: 466 LVKDGDD--------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           LV D  +        F+ L+DI G ED  G MDFK AGT   +TA+Q+D K+ GI   ++
Sbjct: 499 LVSDDIEIDGKTERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDTKLDGIPSQVL 558

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK  R+ IL  M++ +     ++  + PR+  + +P D+I  VIG  GK+I  I
Sbjct: 559 AGALAQAKDARITILEVMAEAIDTP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSI 617

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGA 635
            E+TGA ++I+DDGTV + +S+    +AA + I +I    +P+V + + G VVK  DFGA
Sbjct: 618 TEETGASISIEDDGTVFVGASNGEAAQAAIDKINAIANPQLPKVGERFLGTVVKTTDFGA 677

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           FV     RDGLVHIS+L   +R+ K  DV K GD + V++ D D+RGKI L +   +  T
Sbjct: 678 FVSLLPGRDGLVHISKLGRGKRINKVEDVAKVGDKLRVEIADIDNRGKISLVLVAEESET 737


>gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95]
 gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95]
          Length = 695

 Score =  656 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/701 (39%), Positives = 431/701 (61%), Gaps = 18/701 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  +E E  GR L++E G++A+QS G+V+ T+ E+ +L T         GQDFFPLTV +
Sbjct: 1   MKVLEKELFGRKLRIEHGKVAKQSLGSVMLTFNESTILVTADASEETVKGQDFFPLTVEF 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YAVGKIPGG+++RE +P++  IL +R+IDR IRPLF + + NE QVI  V      
Sbjct: 61  QEKFYAVGKIPGGFIKREGKPSDEAILAARLIDRPIRPLFPENFFNEVQVITTVFSMLNG 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            S     +  AS AL LS +PF G V G ++ Y++GQ++  P  ++ + S +D+ V+GT+
Sbjct: 121 DSIETWGITGASLALNLSPIPFNGIVAGVRIGYVDGQFIAFPTQEQLKNSKIDMVVAGTK 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK--L 240
           DAV MVE E+ ++SE+ +++A++F   + K +I    +       E   +  +   +  +
Sbjct: 181 DAVTMVEGESLEVSEEEMVEALMFAQEKIKEIIAIEEEFLSELNIEKWEVQKEIVPEEFI 240

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--------EHSSWNEGEIV 292
           E+ +S + +E+L+       K  R K I + KK ++  F                +  + 
Sbjct: 241 EDYLSLIDEEELKKVLLTKGKKNRDKVISEYKKNVMKKFEEIFLEKWSVAFFEDKKRFLE 300

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + FE+     +R +++++  R+DGR  + +RDI+ +VGL+ R HGS+LF RG+TQ++  V
Sbjct: 301 NAFEEKLQDSMRKMIINENKRVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTV 360

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG   D Q +D++   +   FM+HYNF P +TGEV R+   SRREIGHG LA RA   +
Sbjct: 361 TLGAPLDVQVLDTIFSDEEKRFMLHYNFPPFSTGEVKRLRGVSRREIGHGHLAERAHKNL 420

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P   +FPYT+R+VS+I ES+GSSSMA+VC +SLALMDAGVPI K VAGIAMGL+ + D+
Sbjct: 421 IPSDEEFPYTIRVVSDILESNGSSSMASVCSASLALMDAGVPIQKHVAGIAMGLIFENDN 480

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F++L+DI G EDHLG MDFKVAGT  GITA QMD+K   +++ ++  AL++AK  RL IL
Sbjct: 481 FVVLTDILGMEDHLGDMDFKVAGTRDGITAFQMDVKTSQVNKEVLQKALEKAKIARLKIL 540

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           ++M + + + R +L  + P +++  IP  +I  VIG GGK I+ I E    +V I+DDG 
Sbjct: 541 DKMYETIPQPRKELSPYVPIMKVFKIPVSKIGEVIGPGGKNIKEISELYNVEVYIEDDGK 600

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           VK+   +  +++ A   I+++    E   I++G V +V  +G FV     + G++H+S L
Sbjct: 601 VKVTGHNANKVDEAINHIQNLIAQVEKGGIFEGTVKRVEKYGIFVEVLPGKVGMLHVSNL 660

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
             +      +  K GD V V+++  +D+GK +L  K + + 
Sbjct: 661 KDK-----LESFKIGDKVKVEVMKVEDQGKFQL--KQLKEE 694


>gi|258652431|ref|YP_003201587.1| polynucleotide phosphorylase/polyadenylase [Nakamurella
           multipartita DSM 44233]
 gi|258555656|gb|ACV78598.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nakamurella multipartita DSM
           44233]
          Length = 750

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/709 (40%), Positives = 419/709 (59%), Gaps = 38/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV A   + T++L+     +  K+  DFFPLT++ +ER YA
Sbjct: 18  FGTRTVRFETGRLAQQAAGAVAAYLDDDTMLLSATSVGKHPKEQFDFFPLTIDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E+ IL  R+IDR +RP F+   +NE QV+I VM  + +    V+
Sbjct: 78  AGRIPGSFFRREGRPSEDAILTCRLIDRPLRPTFTNGLRNEVQVVITVMALNPDDLYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AASA+  +SGLPF GPV G +V  I+GQ+V  PR  E +    D+ V+G       A
Sbjct: 138 AINAASASTQISGLPFSGPVAGVRVALIDGQWVAFPRHSELERAVFDMVVAGRLAGDDVA 197

Query: 185 VLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           ++MVE EA               +E+VV + +       + + +A ++LA   AK   V 
Sbjct: 198 IMMVEAEATTATVGLVAGGAVAPTEEVVAEGLEAAKPFLRVLCQAQNELAGKSAKP--VA 255

Query: 233 DSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           +   F   +E+    ++    ++L  +  I  K  R   +D +K ++    S+  +   E
Sbjct: 256 EFPLFPAYQEDAFAAVENVASDELAQALTIAGKQDRDAAVDAVKARVYEQLSATFAG-RE 314

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +  K+VR  +L  KVR+DGR    +R + A+VG L R HGS+LF RG+TQ 
Sbjct: 315 SELGNAFRSVTKKLVRQRVLKDKVRIDGRGLTDIRTLGAEVGYLPRVHGSALFERGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+L+   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 375 LGVTTLNMLRMEQQLDTLAPENRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGIAMGLV 
Sbjct: 435 LVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGLVS 494

Query: 469 DG---------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           D            ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   ++  
Sbjct: 495 DTVTAEDGTSSVQYVALTDILGAEDAFGDMDFKVAGTRQFVTALQLDTKLDGIPSEVLRG 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  R  IL+ M + +      + E  PR+  + +P D+I  VIG  GK+I  I E
Sbjct: 555 ALVQARDARFTILDVMHEAIDAPDP-MSENAPRITTIKVPVDKIGEVIGPKGKMINSITE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
           QTGA + I+DDGT+ ++      ++AA ++I SI    +P+V + + G VVK   FGAFV
Sbjct: 614 QTGADIAIEDDGTIFVSGPDGGAVQAAIDIINSIANPQLPKVGERFLGTVVKTTAFGAFV 673

Query: 638 HFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                RDGLVHIS+L S +R+AK  DVV  GD + V++++ D RGKI L
Sbjct: 674 SLLPGRDGLVHISKLGSGKRIAKVEDVVNVGDKLQVEIVEIDARGKISL 722


>gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 713

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/713 (38%), Positives = 428/713 (60%), Gaps = 20/713 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M D+    I    GR + +ETG +A+Q+DG+ +    +T++LATVV  +  K+  +F PL
Sbjct: 1   MPDIVKETISLKDGRSIIIETGELAKQADGSAIVRLDDTMLLATVVVSKETKNETNFLPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TV+Y+E+  A GKIPGG+++RE RP++ EIL  R++DR +RP F + +K E Q++I+++ 
Sbjct: 61  TVDYREKYSAGGKIPGGFIKREGRPSDEEILTMRLVDRVLRPTFPEWFKKEIQIMISLLS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
           +D    P  ++ +AAS AL ++G+PF GP+   ++      +++NP LD+  +  +DL V
Sbjct: 121 YDKTVLPDGLAGLAASTALSVAGVPFNGPISEIRIIRSKRNFIINPSLDQLKEADIDLIV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--------CAKEPI 230
             + ++++M+E E  ++ E   L+ II  H E +  IEA  +L+K            +  
Sbjct: 181 GASMNSIIMIEGEMKEIKESEFLNTIIHAHEEIQSQIEAQIRLSKKLSNNSSLFFEDQKS 240

Query: 231 VIDSKDFSKLEEEMSQMIKEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEG 289
              + +   L+EE+     E +        +K  R  Q   +       F +E     E 
Sbjct: 241 KKYNPENESLKEELFSFSYEKIEKIYSNSLDKKTRFIQEKIILNNFKKKFLTEEKIEKEE 300

Query: 290 EIVSVF-EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            I+  F E+I+ KV R ++L+K +R+DGR S+ +R I + V  L   HGS+LF RG+TQ+
Sbjct: 301 AIIDQFYEEIKKKVTRNLILEKGIRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQS 360

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  VTLG+  D   +D++    +  F +HYNF P +TGE+  +   SRREIGHG LA+RA
Sbjct: 361 LTTVTLGSSLDANKIDNVVMENQEKFYLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQRA 420

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +  ++P     PYT+R+VS+I ES+GSSSMATVC +SLALMDAG+ I  PV+GIAMGL  
Sbjct: 421 LKNIIPNN---PYTIRVVSDILESNGSSSMATVCAASLALMDAGISIKNPVSGIAMGLFM 477

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRG 527
           + +  II+SDI G+EDH G +DFK+ GT  GITA QMD+K   G++ +++   L+QA  G
Sbjct: 478 ENEKKIIISDIIGEEDHFGDLDFKITGTQYGITACQMDVKKTQGLTYDLLNQILKQALEG 537

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+ IL +M +VL E R ++    P++    IP D I +VIG GGKVI+ I   T   + I
Sbjct: 538 RIFILRKMLEVLPEYRKKMKPNAPKIYTFNIPKDFIGSVIGTGGKVIQEIQSCTNTNILI 597

Query: 588 DDDGT---VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ G    ++I      +IE A + I+ IT VPE+ KIYK +V  + DFGAFV      +
Sbjct: 598 EEKGDFGYIEIIGHDDEKIEKAIDRIKQITFVPELGKIYKAKVKSIKDFGAFVEIAKGVE 657

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           GL+HIS++  +R+ +  + +  GD V VK +  D++  K+KLS KV+    GK
Sbjct: 658 GLLHISEIGWKRLNRIEEELHIGDIVDVKFMGMDEKNKKMKLSRKVLLPRPGK 710


>gi|254382116|ref|ZP_04997478.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
 gi|194341023|gb|EDX21989.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
          Length = 745

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/708 (40%), Positives = 411/708 (58%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 22  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYA 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 82  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 141

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 142 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 201

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKMC--------AK 227
           A++MVE EA + +        E    + +  G +  KP I+ + K              +
Sbjct: 202 AIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLDAAKPFIKVLCKAQADLAAKAAKPEGE 261

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E ++  +K DL  +  I  K  R  ++D +K+              
Sbjct: 262 FPVFLDYQD--DVYEALAAAVKGDLSQALTIAGKQDREAELDRVKEIAAEKLLPAFEG-R 318

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 319 EKEISAAYRSLTKALVRERVIKDKVRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQ 378

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 379 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 438

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 439 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 498

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 499 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 558

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +      +  F PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 559 ARDARLHILDVMMEAIDTP-DAMSPFAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 617

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I +I +  +PEV + Y G VVK   FGAFV    
Sbjct: 618 EITIEDDGTIYIGAADGPAAEAARATINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 677

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 678 GKDGLLHISQIRKLAGGKRVENVEDVVAVGTKVQVEIAEIDSRGKLSL 725


>gi|302537281|ref|ZP_07289623.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
 gi|302446176|gb|EFL17992.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
          Length = 739

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/708 (39%), Positives = 407/708 (57%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  VM  + +    V+
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATVMALNPDHLYDVI 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPIGGVRVALIKGQWVAFPTHTELEDAVFDMVVAGRALEDGDV 196

Query: 184 AVLMVELEANQLS--------EDVVLDAIIFGHNECKPVIEAISKLAKMC--------AK 227
           A++MVE EA + +        E    + +  G    KP I+ + K              +
Sbjct: 197 AIMMVEAEATEQTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLCKAQADLAAKAAKPEGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +    +   + Q ++ +L  +  I  K  R  ++D +K+              
Sbjct: 257 FPVFLDYEQ--DVYAALEQAVRGELAQALTIAGKQDREAELDRVKEIAAEKLLPAFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++  KVR+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRSLTKALVRERVIKDKVRIDGRGLTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL+
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 494 SQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALTQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I +I +  +PEV + Y G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARSTINAIANPTMPEVGERYLGTVVKTTTFGAFVSLMP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLAVGTKVQVEIAEIDQRGKLSL 720


>gi|152965434|ref|YP_001361218.1| polynucleotide phosphorylase/polyadenylase [Kineococcus
           radiotolerans SRS30216]
 gi|187610277|sp|A6W815|PNP_KINRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151359951|gb|ABS02954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kineococcus radiotolerans
           SRS30216]
          Length = 746

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/713 (39%), Positives = 411/713 (57%), Gaps = 42/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+      GE+ +L+     +S KD  DFFPLTV+ +ER+YA
Sbjct: 18  FGTRTIRFETGRLAKQAAGSAAVYLDGESFLLSATTAGKSPKDQFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+++VM    + +  VV
Sbjct: 78  AGKIPGSFFRREGRPSTEAILTCRLIDRPLRPSFVKGLRNEVQVVVSVMALHPDDAYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT------- 181
           ++  AS +  LSGLPF GP+ G ++  I+GQ+V  PR  E +    D+ V+G        
Sbjct: 138 AINVASLSTQLSGLPFSGPIGGVRIALIDGQWVAFPRYSELERAVFDMVVAGRVVTTADG 197

Query: 182 --QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLAKMCAK--- 227
               A++MVE EA + S +++          + +  G    KP I  + +     A    
Sbjct: 198 SQDVAIMMVEAEATEGSWNLIKDQGATAPTEEVVAAGLEAAKPFIAELVRAQAEVAATAA 257

Query: 228 -----EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
                 P   D +D   + + + +    DL  +  I  K  R  +ID++K+ + +  +  
Sbjct: 258 KPTAAFPTFPDYQD--DVYQAVFEAASADLTAALQIGGKQDRETRIDEVKEAVKAQLADA 315

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            +   E E+ + +  +Q  ++R  +L   VR+DGR    +R +SA+V +L R HGS+LF 
Sbjct: 316 FAG-REKEVSAAYRSVQKALIRQRVLKDGVRIDGRGLADIRTLSAEVEVLPRVHGSALFE 374

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG
Sbjct: 375 RGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHG 434

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGI
Sbjct: 435 ALAERALVPVLPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAAVAGI 494

Query: 463 AMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGL+ D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++ 
Sbjct: 495 AMGLISDTVDGETRYAALTDILGAEDAFGDMDFKVAGTKEFVTAIQLDTKLDGIPASVLA 554

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL QA+  RLHIL+ M++ +     ++    PR+  + +P D+I  VIG  GK+I  I 
Sbjct: 555 GALTQARDARLHILDVMAEAIDAP-DEMSPTAPRIITVKVPVDKIGEVIGPKGKMINQIQ 613

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAF 636
           E TGA ++I+DDGTV I +      EAAR  + +I +  +PEV + Y G VVK   FGAF
Sbjct: 614 EDTGADISIEDDGTVFIGAVDGPSAEAARAAVNAIANPTMPEVGERYLGTVVKTTTFGAF 673

Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V     +DGL+HISQL      +RV    DVV  G  V V++ + D RGK+ L
Sbjct: 674 VSLMPGKDGLLHISQLRKLSGGKRVDNVEDVVAVGQKVQVEIAEIDPRGKLSL 726


>gi|187610337|sp|Q8FPB7|PNP_COREF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/722 (39%), Positives = 408/722 (56%), Gaps = 47/722 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DGAV     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 25  DFGTRTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMY 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QVII VM    E S  V
Sbjct: 85  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYDV 144

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG- 180
           V++  ASAA  +SGLP  G V G ++  I       GQ+V  P  ++ + S  +L V+G 
Sbjct: 145 VAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAGR 204

Query: 181 -----------TQDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                      +  AV+MVE  A++   + + +         +  G    KP I+    A
Sbjct: 205 LVERKRGNKTFSDVAVMMVEAGASENVVERIKEGAPAPTEKTVAEGLEAAKPFIDLLCRA 264

Query: 218 ISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
              LA+  AKE            ++   + +   + L     I  K  R    +D   ++
Sbjct: 265 QEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDFMVEV 324

Query: 276 VSYFSSEHSS-----WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
                              EI + +  +  K+VR  +L +  R+DGR    +RD+  +V 
Sbjct: 325 EEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLGVEVE 384

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGSSLF RG+TQ + V TL   + EQ++DSL+      +M HYNF P +TGE  R
Sbjct: 385 LIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTGETGR 444

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +
Sbjct: 445 VGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYN 504

Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D
Sbjct: 505 AGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITALQLD 564

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL+QA+  RL IL  M++V+     ++ +F PR+  + IP  +I  +
Sbjct: 565 TKLDGIPSKVLADALEQARDARLAILETMAEVIDGP-DEMSQFAPRITTIQIPVSKIGEL 623

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYK 624
           IG  GK I  + E+TGA ++I+DDGTV I+++S    EAA E I ++    +P+V + + 
Sbjct: 624 IGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVGERFL 683

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  G+ + V++ D D+RGKI
Sbjct: 684 GTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDNRGKI 743

Query: 684 KL 685
            L
Sbjct: 744 SL 745


>gi|25028424|ref|NP_738478.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           efficiens YS-314]
 gi|23493709|dbj|BAC18678.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 769

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/722 (39%), Positives = 408/722 (56%), Gaps = 47/722 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DGAV     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 42  DFGTRTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMY 101

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QVII VM    E S  V
Sbjct: 102 AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYDV 161

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG- 180
           V++  ASAA  +SGLP  G V G ++  I       GQ+V  P  ++ + S  +L V+G 
Sbjct: 162 VAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAGR 221

Query: 181 -----------TQDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                      +  AV+MVE  A++   + + +         +  G    KP I+    A
Sbjct: 222 LVERKRGNKTFSDVAVMMVEAGASENVVERIKEGAPAPTEKTVAEGLEAAKPFIDLLCRA 281

Query: 218 ISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
              LA+  AKE            ++   + +   + L     I  K  R    +D   ++
Sbjct: 282 QEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDFMVEV 341

Query: 276 VSYFSSEHSS-----WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
                              EI + +  +  K+VR  +L +  R+DGR    +RD+  +V 
Sbjct: 342 EEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLGVEVE 401

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGSSLF RG+TQ + V TL   + EQ++DSL+      +M HYNF P +TGE  R
Sbjct: 402 LIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTGETGR 461

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +
Sbjct: 462 VGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYN 521

Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D
Sbjct: 522 AGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITALQLD 581

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL+QA+  RL IL  M++V+     ++ +F PR+  + IP  +I  +
Sbjct: 582 TKLDGIPSKVLADALEQARDARLAILETMAEVIDGP-DEMSQFAPRITTIQIPVSKIGEL 640

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYK 624
           IG  GK I  + E+TGA ++I+DDGTV I+++S    EAA E I ++    +P+V + + 
Sbjct: 641 IGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVGERFL 700

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  G+ + V++ D D+RGKI
Sbjct: 701 GTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDNRGKI 760

Query: 684 KL 685
            L
Sbjct: 761 SL 762


>gi|86131670|ref|ZP_01050268.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
           MED134]
 gi|85818115|gb|EAQ39283.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
           MED134]
          Length = 742

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/707 (38%), Positives = 431/707 (60%), Gaps = 18/707 (2%)

Query: 3   DVHTVEIEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            V+   I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD  DF PLTV
Sbjct: 4   KVYKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYESKD-VDFLPLTV 62

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+E+  A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y +ETQV+I +M HD
Sbjct: 63  DYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSETQVMIQLMSHD 122

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG 180
            +  P  ++ +AASAA+ LS  PFE  +  A+V  +NG++++NP   + ++  +D+ +  
Sbjct: 123 DDVMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDIDMMIGA 182

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI--VIDSKDFS 238
           + ++V+MVE E +++SE+ + DAI F H   K   EA  +LA+   ++ +      ++  
Sbjct: 183 SAESVMMVEGEMDEISEEEMADAIKFAHEHIKVQCEAQMRLAEAVGRKEVREYPAEREDE 242

Query: 239 KLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            L++++  M  + +   +     K  R      +K+++ + FS E        +   +  
Sbjct: 243 DLKKKVHDMAYDKVYAIAKAGSSKKERGMAFSQIKEEIKATFSEEELEDFGDLVSKYYRS 302

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            +   +R + L++ +R+DGR +  +R I  +   L   HGS++F RG+TQA+  VTLGT 
Sbjct: 303 AEKAAIRDLTLNEGLRLDGRQTVDIRPIWCETDYLPSVHGSAVFTRGETQALATVTLGTS 362

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D   +D  S      F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P   
Sbjct: 363 RDANQIDMPSHEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMVP--D 420

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFII 475
             PYT+R+VSE+ ES+GSSSMATVC  ++A+MDAG+ ++KPV+GIAMGL+ D +   + +
Sbjct: 421 DCPYTVRVVSEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETGKYAV 480

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKV GT+ GITA QMD+K+ G+S  I+V ALQQA+ GRLHIL ++
Sbjct: 481 LSDILGDEDHLGDMDFKVTGTEDGITACQMDIKVKGLSYEILVNALQQARAGRLHILEKL 540

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD----- 590
           +  ++  R  + ++ P++  + I  + I  +IG GGKVI+ + ++TG  + I++D     
Sbjct: 541 TDTIAAPREDVKDYAPKMVGVRIANEYIGALIGPGGKVIQELQKETGTTIVINEDPVTEE 600

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVH 648
           G V+I  +  A I+A    I SIT  P V   YK +V+K++DFGA V +      + L+H
Sbjct: 601 GVVEILGTGQAGIDAVLAKIDSITFKPVVGNTYKVKVIKMLDFGAVVEYLDAPGNEVLLH 660

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           +S+++ ER    SDV+  G+ + VK    D R +  K+S K + +  
Sbjct: 661 VSEIAWERTENASDVLSMGEELDVKYFGIDKRTRKEKVSRKALMEKP 707


>gi|259507481|ref|ZP_05750381.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
 gi|259164969|gb|EEW49523.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 766

 Score =  653 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/722 (39%), Positives = 408/722 (56%), Gaps = 47/722 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DGAV     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 39  DFGTRTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMY 98

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QVII VM    E S  V
Sbjct: 99  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSYDV 158

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG- 180
           V++  ASAA  +SGLP  G V G ++  I       GQ+V  P  ++ + S  +L V+G 
Sbjct: 159 VAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVAGR 218

Query: 181 -----------TQDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIE----A 217
                      +  AV+MVE  A++   + + +         +  G    KP I+    A
Sbjct: 219 LVERKRGNKTFSDVAVMMVEAGASENVVERIKEGAPAPTEKTVAEGLEAAKPFIDLLCRA 278

Query: 218 ISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
              LA+  AKE            ++   + +   + L     I  K  R    +D   ++
Sbjct: 279 QEGLAQRVAKETREFPLFPAYSDEVYAAVEKQASKKLTQLMTIKGKNERENATNDFMVEV 338

Query: 276 VSYFSSEHSS-----WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
                              EI + +  +  K+VR  +L +  R+DGR    +RD+  +V 
Sbjct: 339 EEKLIGRFEDDLGAAVASKEIRAAYNSLMKKIVRGKILSEGFRIDGRGVSDIRDLGVEVE 398

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           L+ R HGSSLF RG+TQ + V TL   + EQ++DSL+      +M HYNF P +TGE  R
Sbjct: 399 LIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDTKRYMHHYNFPPYSTGETGR 458

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G+P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +
Sbjct: 459 VGSPKRREIGHGALAERAVLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYN 518

Query: 451 AGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AGVP+  PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D
Sbjct: 519 AGVPLKAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTAEFITALQLD 578

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            K+ GI   ++  AL+QA+  RL IL  M++V+     ++ +F PR+  + IP  +I  +
Sbjct: 579 TKLDGIPSKVLADALEQARDARLAILETMAEVIDGP-DEMSQFAPRITTIQIPVSKIGEL 637

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYK 624
           IG  GK I  + E+TGA ++I+DDGTV I+++S    EAA E I ++    +P+V + + 
Sbjct: 638 IGPKGKNINALTEETGANISIEDDGTVFISAASGEAAEAAIEKINALANPQLPKVGERFL 697

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           G VVK   FGAFV     RDGLVHIS+L   +RV K  DVV  G+ + V++ D D+RGKI
Sbjct: 698 GTVVKATAFGAFVSLLPGRDGLVHISKLGNGKRVEKVEDVVTVGEKLQVEIADIDNRGKI 757

Query: 684 KL 685
            L
Sbjct: 758 SL 759


>gi|156543904|ref|XP_001607068.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase
           [Nasonia vitripennis]
          Length = 765

 Score =  653 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/705 (36%), Positives = 400/705 (56%), Gaps = 27/705 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G+ + L TG+ AR +DG  +AT G+T V+ T V          F PL V+Y+++  A G
Sbjct: 49  NGKHMILSTGKYARLADGCAVATLGDTSVMVTTVSKSQSSGVNSFLPLVVDYRQKAAAAG 108

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IP  + RRE   TE+EIL SR+IDRS+RPLF + Y  ETQV+ N++  D  + P V+S+
Sbjct: 109 RIPTNFFRRELGHTEHEILTSRLIDRSLRPLFPQKYNYETQVVCNMLALDGNNDPDVLSI 168

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT-QDAVLMVE 189
             ASAAL +S +P+ GPV   +V  I+ + ++NP   E  Q SL+L V+ T Q+ V+M+E
Sbjct: 169 NGASAALAVSDIPWNGPVGAVRVGLIDNEVLINPTRREIQQSSLNLIVTATQQNLVVMLE 228

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQM 247
             A+ +    +  A+  G  EC+ ++++I KL K   K    ++   +   ++ E +  +
Sbjct: 229 GSADNILVPELRKALKAGVKECQIIVQSIQKLQKNFGKPKRTVEPPAELPEEIVESIKSL 288

Query: 248 IKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            ++ LR   S +  +K  R   I++L+ ++++   + HS  + G  +  F +    + R+
Sbjct: 289 SEKKLRKIFSDYKHDKLSRDNAINNLRNEVLTTVKASHSELDSGLTLEAFSEFSKTLFRS 348

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +   R DGR    +R+I+ QV L +  HGS+LF RG TQ +  VTL + +    +D+
Sbjct: 349 LIFENNCRCDGRKYTDLRNITCQVDLFKPLHGSALFQRGQTQVLCTVTLDSPDSALKMDT 408

Query: 366 L----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +    SG +  +F +HY F P AT E  R G   RRE+GHG LA R +  +LP+   +P+
Sbjct: 409 MSMLSSGVKEKNFFLHYEFPPYATNETGRTGPVGRREMGHGALAERGLRAILPKE--YPF 466

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474
           T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI+ P AG+A+GLV   D       D+ 
Sbjct: 467 TIRLTSEVLESNGSSSMASVCGGSLALMDAGVPIAAPAAGVAIGLVTKYDKDTKHIKDYK 526

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G ED+LG MDFK+AGT  G+TA+Q D+KI G+   I++ +L+QA   +  ILN 
Sbjct: 527 ILTDILGIEDYLGDMDFKIAGTKKGVTALQADIKIPGLPLKIVMESLEQATEAKTQILNI 586

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M++ +S+ R       P  E + +P      ++G+GG  I+ I  QTG  +N ++D    
Sbjct: 587 MNEAISKPRTDKKNNMPVTETIEVPAHLRGKLLGIGGTNIKKIFLQTGVHINQEEDTKFV 646

Query: 595 IASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVH 648
           + + +   ++ A+E I  +T        E   IY  ++V++ D G  V         L+H
Sbjct: 647 LFAPNETAMDEAKETINQLTKQEREPTLEFGGIYTAKIVEMKDIGVMVTLYPSMPPALLH 706

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
            SQL   +V   S +  + G  + VK    D   G ++LS KV+ 
Sbjct: 707 NSQLDQRKVNHPSALGFEVGQELQVKYFGRDPASGNMRLSRKVLQ 751


>gi|88801520|ref|ZP_01117048.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
           irgensii 23-P]
 gi|88782178|gb|EAR13355.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
           irgensii 23-P]
          Length = 746

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/701 (38%), Positives = 426/701 (60%), Gaps = 18/701 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD   F PLTV+Y+E+ 
Sbjct: 10  IDLGDGREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYEQKD-LGFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD +  P 
Sbjct: 69  AAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYTAETQVMIQLMSHDEDVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS  PFE  +  A+V  ING++++NP   +  +  +D+ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDFPFECAISEARVGRINGKFIINPTRAQLAESDIDMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLEEEM 244
           MVE E +++SE+ + DAI F H   K    A  +LA+   K+ +    K  +  +LE+ +
Sbjct: 189 MVEGEMDEISEEEMADAIKFAHEAIKVQCAAQIRLAEAFGKKEVREYEKAREDKELEKRV 248

Query: 245 SQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             M  + +   +     K+ R     ++K  + + F+ E  +   G +   +   +   +
Sbjct: 249 HDMAYDKVYAIAEAGSSKHERTAAFKEIKTAIKATFTEEELADYGGLVSDYYRKAEKAAI 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + L+  +R+DGR ++ +R I ++V  L   HGS++F RG+TQA+  VTLGT  D   +
Sbjct: 309 RDLTLNVGLRLDGRKTDEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKI 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S     +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P     PYT+
Sbjct: 369 DMPSFEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIPT--DCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481
           R+VSE+ ES+GSSSMATVC  ++ALMDAGV + +PV+GIAMGL+ D +   + +LSDI G
Sbjct: 427 RVVSEVLESNGSSSMATVCAGTMALMDAGVQMIRPVSGIAMGLISDAESGKYAVLSDILG 486

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DEDHLG MDFKV GT  GITA QMD+K+ G+   I+V AL+QA+ GRLHIL ++++ +S 
Sbjct: 487 DEDHLGDMDFKVTGTSEGITACQMDIKVKGLGYEILVNALKQAREGRLHILGKITETIST 546

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
           + +++ E+ P++    IP + I   IG GGK I+ + ++TG  + I +D     G ++I 
Sbjct: 547 ANVEVKEYAPKMINRRIPNELIGAFIGPGGKHIQELQKETGTTIVITEDAVTEEGIIEIL 606

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLST 654
            +    IE     I S+   PEV   Y+ +V+K++DFGA V +      + L+H+S+L+ 
Sbjct: 607 GTDPEGIEKVIARIESMLFKPEVGSAYEVKVIKILDFGAVVEYVEAPGNEVLLHVSELAW 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           ER    SDVVK GD + VK    D R +  K+S K + +  
Sbjct: 667 ERTDNVSDVVKMGDILDVKYFGLDPRTRKEKVSRKALLEKP 707


>gi|194741988|ref|XP_001953491.1| GF17196 [Drosophila ananassae]
 gi|190626528|gb|EDV42052.1| GF17196 [Drosophila ananassae]
          Length = 771

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/714 (35%), Positives = 402/714 (56%), Gaps = 30/714 (4%)

Query: 6   TVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           +VE+ +  GR +   +GR+AR ++G+ +   G+T V+ T V       GQ F PL V+Y+
Sbjct: 41  SVEVNFSNGRNMTFSSGRLARFANGSSVCQMGDTAVMVTAVAKAKPTPGQGFMPLVVDYR 100

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
            +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLFSK Y+ ETQ++ N++  D   
Sbjct: 101 LKNAASGRIPMNFMRREMGPSEKEILSARLIDRSLRPLFSKDYRTETQLVCNMLAMDAVH 160

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ- 182
           SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T+ 
Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSATKQ 220

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKL 240
           + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   +++      +L
Sbjct: 221 NLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEAPTATDPEL 280

Query: 241 EEEMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           E+ +  M +  LR        +K  R   +++++  ++    S        +I  +F   
Sbjct: 281 EQAVRSMCEMRLREIFQDAHHDKISRDNAVNEVRSNVIDKVWSSFPDTEPSQIGELFNQT 340

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             ++ R ++ +++ R DGR  + +R+IS QV L +  HGS+LF RG TQ    V+L + E
Sbjct: 341 SREIFRELIFEREQRCDGRSYDQLRNISCQVDLYKPLHGSALFQRGQTQVFCTVSLDSPE 400

Query: 359 DEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R + P L
Sbjct: 401 SAMKLDSLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERGLLPTL 460

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-- 471
           P    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP++ P AG+A+GLV   +  
Sbjct: 461 P--HDYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYEND 518

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A 
Sbjct: 519 DTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKAT 578

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  IL+ M + + E R    +  P  E + + P Q   +IG  G  ++ I  +TGA +
Sbjct: 579 DAKSKILDIMGEAIREPRKYRKDSWPVSETLTVEPHQRAQLIGPSGLHMKRIYLETGATL 638

Query: 586 NIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF- 639
              D+    + + S A ++ A+E     M++      E   IY  ++ ++ D G  V   
Sbjct: 639 TAADESNFSVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILY 698

Query: 640 CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                 L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 699 PSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 752


>gi|24651641|ref|NP_651867.2| CG11337, isoform A [Drosophila melanogaster]
 gi|24651643|ref|NP_733429.1| CG11337, isoform B [Drosophila melanogaster]
 gi|281362905|ref|NP_001163783.1| CG11337, isoform D [Drosophila melanogaster]
 gi|23172770|gb|AAF57151.2| CG11337, isoform A [Drosophila melanogaster]
 gi|23172771|gb|AAN14273.1| CG11337, isoform B [Drosophila melanogaster]
 gi|272477256|gb|ACZ95076.1| CG11337, isoform D [Drosophila melanogaster]
          Length = 771

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 402/717 (56%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ +  GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           T+ + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++  ++  
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L + +  M +  LR        +K  R   +++++  ++    S         I   F
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQF 337

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 338 NQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 397

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 398 SQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLL 457

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--- 467
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV   
Sbjct: 458 PTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKF 515

Query: 468 -----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
                K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ
Sbjct: 516 ENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQ 575

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   + +IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG
Sbjct: 576 KATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETG 635

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             +   D+    + + S A ++ A+E     M++      E   IY  ++ ++ D G  V
Sbjct: 636 TSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMV 695

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 696 ILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 752


>gi|195053730|ref|XP_001993779.1| GH21615 [Drosophila grimshawi]
 gi|193895649|gb|EDV94515.1| GH21615 [Drosophila grimshawi]
          Length = 760

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 403/717 (56%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           D  TVE+++  GR + L +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 29  DAPTVEVQFSNGRNMTLSSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVV 88

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+++  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+NETQ++ N++  D
Sbjct: 89  DYRQKNAASGRIPMNFMRRELGPSEREILSARLIDRSLRPLFPKDYRNETQLVCNMLAMD 148

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP ++++ AAS AL +S +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 149 AVHSPDILAINAASMALSVSDIPWHGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSA 208

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           T+ + V+M+E + N +    +L AI  G  E + +I  I +L K   ++   +D   +  
Sbjct: 209 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKSYGRQKRDVDALPESE 268

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L + +  M +  LR        +K  R   +++++  ++    S +       I   F
Sbjct: 269 PELVQAVRSMCEMRLREIFQDAQHDKISRDTAVNEVRANVLDKVWSSYPDAEPATIGEEF 328

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ +   R DGRD +++R+I+ QV + +  HGS+LF RG TQ    V+L 
Sbjct: 329 NKACRSIFRELIFESNRRCDGRDYDSLRNINCQVDMYKPLHGSALFQRGQTQVFCTVSLD 388

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++E    +D+L      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R + 
Sbjct: 389 SQESAMKLDTLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERGLL 448

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI  P AG+A+GLV   
Sbjct: 449 PTLP--HDYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPIIAPAAGVAIGLVTKY 506

Query: 471 D--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +        D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ
Sbjct: 507 ENEDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQ 566

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ M+  + E R    E  P  E +++ P Q   +IG  G  ++ I  +TG
Sbjct: 567 KATDAKAKILDIMADTIREPRTYRKECWPVSETLSVEPHQRAQLIGPSGLHMKRIYLETG 626

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             +   DD +  I + S A ++ A+E     M++      E   IY  ++ ++ D G  V
Sbjct: 627 TTLTAADDNSFTIFAPSQAALDEAKELIDGYMLKERVPQLEFGGIYTAKITELRDTGVMV 686

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 687 ILYPSMPPALLHNSQLDQRKIAHPSALGLEVGQELQVKYFGRDPVSGFMRLSRKVLQ 743


>gi|195505449|ref|XP_002099509.1| GE23317 [Drosophila yakuba]
 gi|194185610|gb|EDW99221.1| GE23317 [Drosophila yakuba]
          Length = 771

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/717 (35%), Positives = 400/717 (55%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ +  GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLDLVVSA 217

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           T+ + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++  +   
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVTADVD 277

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L + +  M +  LR        +K  R   +++++  ++    S         I   F
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTHDKISRDNAVNEVRSNVIDKVWSSFPDTEPSLIAEQF 337

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 338 NQTSRAIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 397

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 398 SQESAMKLDSLAALESGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLL 457

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV   
Sbjct: 458 PTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKY 515

Query: 471 D--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +        D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ
Sbjct: 516 ENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQ 575

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ MS+ + E R    +  P  E + + P Q   +IG  G  ++ I  +TG
Sbjct: 576 KATDAKSKILDIMSEAIREPRKYPKDSWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETG 635

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             +   D+    + + S A ++ A+E     M++      E   IY  ++ ++ D G  V
Sbjct: 636 TSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMV 695

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 696 ILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 752


>gi|54650534|gb|AAV36846.1| RH44882p [Drosophila melanogaster]
          Length = 771

 Score =  651 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 402/717 (56%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ +  GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           T+ + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++  ++  
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L + +  M +  LR        +K  R   +++++  ++    S         I   F
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQF 337

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 338 NQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 397

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 398 SQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLL 457

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--- 467
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV   
Sbjct: 458 PTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKF 515

Query: 468 -----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
                K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ
Sbjct: 516 ENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQ 575

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   + +IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG
Sbjct: 576 KATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETG 635

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             +   D+    + + S A ++ A+E     M++      E   IY  ++ ++ D G  V
Sbjct: 636 TSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMV 695

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 696 ILYPSMPPALLHNSQLDQRKIAHPSTLNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 752


>gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
 gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
          Length = 765

 Score =  651 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/704 (35%), Positives = 392/704 (55%), Gaps = 30/704 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++L +G++A+ +DG+ +   G+T V+ T V        Q F PL V+Y+++  A G+I
Sbjct: 36  RKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRI 94

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P ++++  
Sbjct: 95  PTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNDPDILAING 154

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG-TQDAVLMVELE 191
           ASAAL LS +P+ GP+   +V  ++G+ V+NP   E   S L+L V+G  Q+ V+M+E  
Sbjct: 155 ASAALALSDIPWNGPIGAVRVGLVDGETVINPTRKEMASSTLNLVVAGAAQNQVVMLEAT 214

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE--EMSQMIK 249
           A  + +     AI  G  + + +I+ I +L K        +  K F   EE  E+++ + 
Sbjct: 215 AENILQQDFCHAIKVGVKQTQHIIQGIQQLVKERGVVKRTVQ-KLFLAPEEIVELAKKLA 273

Query: 250 EDLRVSCFI---PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
            +   + F     +K  R + I+ ++ +       +       EI+  F  +   + R +
Sbjct: 274 SNKIYAVFTDSSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNVVSKDIFRNL 333

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD-- 364
           +L++  R DGRD  ++RDI  +V + +  HGS+LF RG TQ +  VT  + E     D  
Sbjct: 334 VLNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSLESSVKSDVI 393

Query: 365 --SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA+ PV+P    FP+T
Sbjct: 394 STAVSGIKDKNFMLHYEFPPYATNEIGKVTVMNRRELGHGALAERALKPVIP--QDFPFT 451

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------DGDDFII 475
           +R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GLV        D +D+ +
Sbjct: 452 IRVTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQGKGDIEDYRL 511

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED+ G MDFK+AGT+ GITA+Q+D+K+ GI   I+V A+QQA   +  IL  M
Sbjct: 512 LTDILGIEDYYGDMDFKMAGTNKGITALQVDLKLPGIPIKIVVEAIQQATAAKREILQIM 571

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++ L++ R    E  P VE + +P  +    +G G   ++ +  QTG  V+  D+ T  +
Sbjct: 572 NQTLAKPRPNRKESGPVVETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVSQLDEETYSV 631

Query: 596 ASSSLAEIEAAREMIRSITDV-----PEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHI 649
            + +   +  ARE I  I         E   IY   + ++ D G  V         L+H 
Sbjct: 632 FAPTPGAMHEAREFIGEICKDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNMTPVLLHN 691

Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           SQL   ++   S + ++ G  + VK    D   G+++LS K++ 
Sbjct: 692 SQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKILQ 735


>gi|227549063|ref|ZP_03979112.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078845|gb|EEI16808.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 776

 Score =  651 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/718 (37%), Positives = 406/718 (56%), Gaps = 43/718 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V      +T++LAT    ++ +D  DFFPLTV+ +ER Y
Sbjct: 53  DFGSRTIRFETGQLARQAGGSVTTYLDEDTMLLATTTASKNPRDNIDFFPLTVDVEERMY 112

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  + +    V
Sbjct: 113 AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMNPDEYYDV 172

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT 181
           V++  ASAA  LSGLP  G V   ++  +       GQ+V  P  ++ D    ++ V+G 
Sbjct: 173 VAINGASAATQLSGLPVSGAVGAVRMALLTDDQHPEGQWVAFPNHEQHDHCVFEMVVAGR 232

Query: 182 ----QDAVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
                 A++MVE  A               +E+ V + +       K + E  + LA+  
Sbjct: 233 VVDGDVAIMMVEAGAGASVVKLVADGAPAPTEETVAEGLDAAKPFIKTLCETQAALAEET 292

Query: 226 AKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
           AKE    +       K+   + +   + L     I  K  R    +   +++      + 
Sbjct: 293 AKETQEFELFPAYSDKVYSAVEKRAAKKLATLLTIQGKKDRDDATNAYMEEIEETLLDKF 352

Query: 284 S---------SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
                     +    EI + +  +   +VR  +L +  R+DGR    +RD+  +V L+ R
Sbjct: 353 DFDDDDEDEYTQASKEIRAAYNALMKSIVREKILTEGFRIDGRGVSDIRDLEVEVELIPR 412

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS+LF RG+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE  R+G+P
Sbjct: 413 AHGSALFERGETQILGVTTLDMLKMEQTLDSLQPETAKRYIHHYNFPPYSTGETGRVGSP 472

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L +AGVP
Sbjct: 473 KRREIGHGALAERALIPVIPPREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYNAGVP 532

Query: 455 ISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           ++ PVAGIAMGLV    D    ++ L+DI G ED  G MDFKV+GT   ITA+Q+D K+ 
Sbjct: 533 LAAPVAGIAMGLVSGEVDGATKYVALTDILGAEDAFGDMDFKVSGTPDFITALQLDTKLD 592

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI   ++V AL+QA+  R  IL+ M++V+     ++    P++  + +P  +I  VIG  
Sbjct: 593 GIPSEVLVSALEQARDAREAILDTMAEVIDGP-DEMNPLAPKITAINVPVSKIGEVIGPK 651

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVV 628
           GK+I  I E+TGA+++I+DDGT+ +++++    +AA + I  I    +P+V + Y G VV
Sbjct: 652 GKMINSITEETGAEISIEDDGTIYVSAATGESADAAIDKINGIANPQMPKVGERYLGTVV 711

Query: 629 KVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           K + FGAFV      DGLVHIS+L  ++R+ K  DVV  G+ + V++ D D+RGKI L
Sbjct: 712 KTVAFGAFVSILPGTDGLVHISKLGGSQRIDKVEDVVNVGEKIEVEIADIDNRGKISL 769


>gi|195575304|ref|XP_002105619.1| GD16436 [Drosophila simulans]
 gi|194201546|gb|EDX15122.1| GD16436 [Drosophila simulans]
          Length = 771

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 402/717 (56%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ +  GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           T+ + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++  ++  
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L + +  M +  LR        +K  R   +++++  ++    S         I   F
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQF 337

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 338 NQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 397

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 398 SQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLL 457

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--- 467
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV   
Sbjct: 458 PTLPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKF 515

Query: 468 -----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
                K  +D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ
Sbjct: 516 ENDDTKHLEDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQ 575

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG
Sbjct: 576 KATDAKSKILDIMSEAIREPRKYRKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETG 635

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             +   D+    + + S A ++ A+E     M++      E   IY  ++ ++ D G  V
Sbjct: 636 TSLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMV 695

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 696 ILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 752


>gi|312972565|ref|ZP_07786738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           1827-70]
 gi|310332507|gb|EFP99720.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           1827-70]
          Length = 595

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/579 (47%), Positives = 398/579 (68%), Gaps = 2/579 (0%)

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
           +  + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL
Sbjct: 2   VSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 61

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
            V+GT+ AVLMVE EA  LSED +L A++FGH + + VI+ I++L K   K       + 
Sbjct: 62  VVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP 121

Query: 237 FSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            ++ L   ++ + +  L  +  I +K  R  Q+D +K + ++   +E  + +E E+  + 
Sbjct: 122 VNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEIL 181

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLG
Sbjct: 182 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 241

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P 
Sbjct: 242 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 301

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++
Sbjct: 302 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 361

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M
Sbjct: 362 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 421

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + ++  R  + EF PR+  + I PD+I++VIG GG VIR + E+TG  + I+DDGTVKI
Sbjct: 422 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 481

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++   + + A   I  IT   EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +
Sbjct: 482 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 541

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           RV K +D ++ G  V VK+L+ D +G+I+LS+K   + +
Sbjct: 542 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 580



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T      R  +       +  D F    +Y 
Sbjct: 209 RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLF--HYN 265

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDL 122
              Y+VG+           P   EI   R+  R +  +      +    +V+  + + + 
Sbjct: 266 FPPYSVGETGMV-----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 320

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L ++   G +D  
Sbjct: 321 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 378

Query: 178 VSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNE 210
           V+G++D +  ++++     ++++++  A+      
Sbjct: 379 VAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 413


>gi|288925349|ref|ZP_06419283.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
 gi|288337820|gb|EFC76172.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
          Length = 746

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/680 (40%), Positives = 407/680 (59%), Gaps = 24/680 (3%)

Query: 35  YGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRM 94
            G TV+LATV   +    G DF PL V+Y+E+  A G+ PGG+ +RE +  ++EIL SR+
Sbjct: 1   MGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRFPGGFTKREGKANDDEILTSRL 60

Query: 95  IDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV 154
           +DR++RPLF   Y  E  V + ++  D    P  ++  AASAA+  S +PF+ P+   +V
Sbjct: 61  VDRALRPLFPSNYHAEVYVQVMLLSADGVDQPDALAGFAASAAMACSDIPFDYPISEVRV 120

Query: 155 DYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKP 213
             + G+YV+NP   +     +DL V  T+D ++MVE E  ++SE  ++ A+       KP
Sbjct: 121 ARVGGEYVINPTFQQMADADMDLMVGATKDNIMMVEGEMKEVSEQDLIGALKVAAEAIKP 180

Query: 214 VIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCF-----IPEKYVRCKQI 268
           + E   +L+K    +  V    D    +EE+ + IK +L    +       EK+ R    
Sbjct: 181 MCELQEELSKELGTD--VKREYDHEVNDEELREQIKSELYQPVYDVNKQALEKHARQDAF 238

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVS-------VFEDIQAKVVRTVMLDKKVRMDGRDSET 321
           D + +  +  + + H+  +E E+          ++D+    +R  +LD+ +R+DGR +  
Sbjct: 239 DKILEDFLEKYDAAHTELSEDELDEKHAEAHRYYDDVMRDAMRRCILDEGLRLDGRATTE 298

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R I ++V  L   HGS+LF RG+T ++   TLGT+ DE+ VD +       F++HYNF 
Sbjct: 299 IRPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGYQRFLLHYNFP 358

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P +TGE        RRE+GHG LA R +   +P  A FPYT+R+VS+I ES+GSSSMATV
Sbjct: 359 PFSTGEAKAQRGVGRREVGHGHLAWRGLKDQIP--ADFPYTVRLVSQILESNGSSSMATV 416

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           C  +LALMDAGVP+ KPV+GIAMGL+K+   D + ILSDI GDEDHLG MDFK  GT  G
Sbjct: 417 CAGTLALMDAGVPMKKPVSGIAMGLIKNPGEDKYAILSDILGDEDHLGDMDFKTTGTKDG 476

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           +TA QMD+K  G+S  I+  AL QAK GR HILN+M + +SE R ++    PR+E   IP
Sbjct: 477 LTATQMDIKCDGLSFEILEKALMQAKAGREHILNKMMETISEPRAEMKPQVPRIEAFEIP 536

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEAAREMIRSITDV 616
            + I  VIG GGK+I+ + E TGA + ID+    G V++++ +   I+AA   IRSI  +
Sbjct: 537 KEFIGAVIGPGGKIIQQMQEDTGATITIDETDGVGKVQVSAPNKDAIDAAIAKIRSIVAI 596

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLL 675
           PEV ++Y+G V  +M +G FV     +DGL+HIS++  +R+    +  +KEGD + VKL+
Sbjct: 597 PEVGEVYEGTVRSIMPYGCFVEILPGKDGLLHISEIDWKRLETVEEAGIKEGDKLKVKLM 656

Query: 676 DFDDR-GKIKLSMKVVDQNT 694
           + D + GK KLS +V+ +  
Sbjct: 657 EIDPKTGKYKLSRRVLLEKP 676



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 114/304 (37%), Gaps = 33/304 (10%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ--ERTYAVGKIPGGYLRRESRPT 85
            G+ L   GET+ L+T      L +      L   YQ     Y       G  + +    
Sbjct: 313 HGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGYQRFLLHYNFPPFSTGEAKAQRGVG 372

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
             E+    +  R ++      +    +++  +++ +  SS  + ++ A + ALM +G+P 
Sbjct: 373 RREVGHGHLAWRGLKDQIPADFPYTVRLVSQILESNGSSS--MATVCAGTLALMDAGVPM 430

Query: 146 EGPVVGAQVDYI-----NGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEAN----- 193
           + PV G  +  I     +   +L+  L ++   G +D   +GT+D +   +++       
Sbjct: 431 KKPVSGIAMGLIKNPGEDKYAILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLS 490

Query: 194 -QLSEDVVLDAIIFGHNEC-KPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKED 251
            ++ E  ++ A   G       ++E IS+       +   I++ +  K  E +  +I   
Sbjct: 491 FEILEKALMQA-KAGREHILNKMMETISEPRAEMKPQVPRIEAFEIPK--EFIGAVIGPG 547

Query: 252 LRVSCFIPEKYVRCKQIDDL------------KKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
            ++   + E       ID+             K  + +  +   S     E+  V+E   
Sbjct: 548 GKIIQQMQEDTGATITIDETDGVGKVQVSAPNKDAIDAAIAKIRSIVAIPEVGEVYEGTV 607

Query: 300 AKVV 303
             ++
Sbjct: 608 RSIM 611


>gi|146299204|ref|YP_001193795.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
           johnsoniae UW101]
 gi|187610263|sp|A5FJZ1|PNP_FLAJO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146153622|gb|ABQ04476.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
           johnsoniae UW101]
          Length = 714

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/693 (40%), Positives = 419/693 (60%), Gaps = 16/693 (2%)

Query: 1   MFDVHTVEI-EWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP 58
           M    + EI +   GR + +ETG++A+Q+DG+V+   G  ++LAT V  R+   G DF P
Sbjct: 1   MIPQVSQEIIDLGDGRSISIETGKLAKQADGSVVVRLGNCMLLATAVSARTSNPGVDFLP 60

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
           LTV+Y+E+  A G+ PGG+ +RE+RP+++E+L  R++DR +RPLF   Y  ETQV+I +M
Sbjct: 61  LTVDYREKFAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMIQLM 120

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLF 177
            HD    P  ++ +AASAAL +S +PF   +   +V  I+G+ V+NP   E ++  +D+ 
Sbjct: 121 SHDDNVMPDALAGLAASAALAVSDIPFYNLISEVRVARIDGKLVINPSRTELEKSDIDMM 180

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL-AKMCAKEPIVIDSKD 236
           +  + D+V MVE E  ++SE  +++AI F H   K  I A  KL AK+ ++E    + + 
Sbjct: 181 IGASLDSVAMVEGEMKEISEAEMIEAIKFAHEAIKVQIHAQQKLRAKLSSQEYRTYEGEV 240

Query: 237 FSKLEEEMSQMIKED--LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN---EGEI 291
             +      +    D    ++     K  R ++   +K++  + F+ E  + N    G +
Sbjct: 241 EDEAVYAKVKAAAYDKCYAIAQEASGKAERGEKFATVKEEAKALFTEEEYAENADLAGLV 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
              F     + VR V+L+K +R+DGR +  +R I  +   L   HGSSLF RG+TQA+  
Sbjct: 301 GKYFYKTNKEAVRNVILEKGIRLDGRKTTEIRPIWCETDYLPSVHGSSLFTRGETQALAT 360

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           VTLGT  +   +DS S      F +HYNF P +TGE   +   SRRE+GHG LA+RA+  
Sbjct: 361 VTLGTSREANQIDSPSEQGEEKFYLHYNFPPFSTGEAKPLRGTSRREVGHGNLAQRALKN 420

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           ++P  A  PYT+R+VSE+ ES+GSSSMATVC  ++ALMDAGV + KPV+GIAMGL+ DG+
Sbjct: 421 MIP--ADCPYTIRVVSEVLESNGSSSMATVCAGTMALMDAGVQMVKPVSGIAMGLITDGE 478

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G+  +IM  AL QA+ GRLHI
Sbjct: 479 KFAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIDGLRYDIMEQALAQARDGRLHI 538

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI---D 588
           L ++++ ++  R  +    P++    IP + I  +IG GGKVI+ + + TG  + I   D
Sbjct: 539 LGKLTETIAAPRADVKAHAPKIITRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVD 598

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGL 646
           + G V+I  +    I+     I ++T  P+V + Y+ +V+K++DFGA V +      + L
Sbjct: 599 EQGVVEILGTDPEGIKTVLAKIDALTFKPQVGEAYEVKVIKMLDFGAVVEYTAAPGNEVL 658

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +H+S+L+ ER    +DVVK GD   VK L  D 
Sbjct: 659 LHVSELAWERTENVADVVKMGDVFEVKYLGVDP 691


>gi|194904919|ref|XP_001981085.1| GG11868 [Drosophila erecta]
 gi|190655723|gb|EDV52955.1| GG11868 [Drosophila erecta]
          Length = 771

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/717 (35%), Positives = 402/717 (56%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ +  GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKSKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASVALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDF 237
           T+ + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++  ++  
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVD 277

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L + +  M +  LR        +K  R   +++++  ++    S         I   F
Sbjct: 278 PELGKAVRSMCEMRLREIFQDSTHDKISRDNAVNEVRSNVIDKVWSSFPDTEPSLIAEQF 337

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 338 NQTCRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 397

Query: 356 TREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++E    +DSL+     G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 398 SQESAMKLDSLTALESGGLKAKNFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLL 457

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--- 467
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV   
Sbjct: 458 PTLPNE--YPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKF 515

Query: 468 -----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
                K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+K+ GI   +++ +LQ
Sbjct: 516 ENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKVPGIPLKVVMESLQ 575

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ MS+ + E R    +  P  E + + P Q   +IG  G  ++ I  +TG
Sbjct: 576 KATDAKSKILDIMSEAIREPRKYPKDSWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETG 635

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
             +   D+    I + S A ++ A+E     M++      E   IY  ++ ++ D G  V
Sbjct: 636 TSLTAVDETHFSIFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMV 695

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 696 ILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 752


>gi|325672779|ref|ZP_08152475.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
           33707]
 gi|325556656|gb|EGD26322.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
           33707]
          Length = 752

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/711 (38%), Positives = 415/711 (58%), Gaps = 40/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  YGTRTVRFETGRLAQQAAGAVVAYLDDETMLLSATSASKQPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDEDQGS-LDLFVSGT- 181
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ + +  D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRV 204

Query: 182 ----QDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
                 A++MVE EA +             +E +V + +         +  A   LA+  
Sbjct: 205 VESGDVAIMMVEAEATENVISLIDGGAQAPTEAIVAEGLEAAKPFIASLCGAQQALAEKA 264

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
           AK     +   F   ++++   +++     L  +  I  K  R  + D++K +++   + 
Sbjct: 265 AKP--AGEYPLFPAYQDDVYAAVEKAAAAPLSEALSIAGKQERDDKTDEVKAEVLEQVAP 322

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           +     E EI + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HGS+LF
Sbjct: 323 QFEG-REKEIGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAVIPRAHGSALF 381

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RREIGH
Sbjct: 382 ERGETQIMGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGH 441

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAG
Sbjct: 442 GALAERALVPVLPSQEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAG 501

Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGLV D  D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI   ++
Sbjct: 502 IAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTKNFVTALQLDTKLDGIPSQVL 561

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA   R  IL  M++ +     ++  + PR+  + +P D+I  VIG  GK+I  I
Sbjct: 562 AGALSQAHDARTTILEVMAEAIDAP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSI 620

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGA 635
            E+TGA ++I+DDGTV + ++     +AA + I +I    +P+V + + G VVK   FGA
Sbjct: 621 TEETGANISIEDDGTVYVGAADGPSAQAAIDKINAIANPQLPKVGERFLGTVVKTTAFGA 680

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FV     RDGLVHIS+L   +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 681 FVSLLPGRDGLVHISKLGNGKRIAKVEDVVNVGSKLRVEIADIDNRGKISL 731


>gi|195449886|ref|XP_002072269.1| GK22421 [Drosophila willistoni]
 gi|194168354|gb|EDW83255.1| GK22421 [Drosophila willistoni]
          Length = 769

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/717 (36%), Positives = 406/717 (56%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +V +VE+++  GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 36  EVPSVEVKFSNGRNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTPGQNFMPLVV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++  D
Sbjct: 96  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKEYRNETQLVCNMLSMD 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V    G+ ++NP   E Q S LDL VS 
Sbjct: 156 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCEGEVLINPTRRELQSSQLDLVVSA 215

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDF 237
           T+ + V+M+E +   +    +L AI  G  E + +I+ I +L K   +    I++  +  
Sbjct: 216 TKQNLVVMLEGKGQVVLLQDLLKAIKQGTREAQFIIQEIERLQKSYGRHKRSIETISEVD 275

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L++ +  M +  LR        +K  R   ++D++  ++    S +       I   F
Sbjct: 276 EELQQAVRSMSEMRLREIFQDAQHDKISRDNAVNDVRSNVIDKVWSSYPDTEPAVIGEEF 335

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             +   + R ++ ++  R DGRD +++R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 336 NKVSRNIFRDLLFERTKRCDGRDFDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 395

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA RA+ 
Sbjct: 396 SPESAMKLDSLAALESGGLKSKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERALM 455

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--- 467
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLAL+DAGVP+S P AG+A+GLV   
Sbjct: 456 PTLPS--DYPFTVRLTSEVLESNGSSSMASVCGGSLALLDAGVPVSAPAAGVAIGLVTRY 513

Query: 468 -----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
                K   D+ IL+DI G ED+LG MD KVAGT  G TA+Q D+KI GI   +++ +LQ
Sbjct: 514 ENNDTKHLQDYRILTDILGIEDYLGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQ 573

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG
Sbjct: 574 KATDAKSKILDIMSEAIREPRKYRKECWPVSETLTVEPQQRSQLIGPSGLHLKRIYLETG 633

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFV 637
             +   D+G   + + S A ++ A+E+I            E   IY  ++ ++ D G  V
Sbjct: 634 TTLTAADEGQFTVFAPSQAAMDEAKELIEGYLVKERVPDLEFGGIYTAKITELRDTGVMV 693

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 694 ILYPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 750


>gi|227497565|ref|ZP_03927791.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832965|gb|EEH65348.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
           urogenitalis DSM 15434]
          Length = 789

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/709 (38%), Positives = 404/709 (56%), Gaps = 36/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R   + IL  R+IDR +RP F K  +NE QV+  V+    + +  V+
Sbjct: 80  AGRIPGSFFRREGRAGTSAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDAYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GPV G ++  I+GQ+V  PR  E +  + ++ V+G        
Sbjct: 140 AINAASMSTQIAGLPFAGPVAGTRLALIDGQWVAFPRYSELERATFNMVVAGRVLEDGDV 199

Query: 184 AVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE  A +             +E VV  A+       K + EA  K+AK  +K    
Sbjct: 200 AIMMVEAGATENAWDLIRAGATAPTEPVVASALEAAKPHIKALCEAQMKVAKHASKPTAE 259

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SSW 286
            P+ +D  D  + E         DL  +     K  R    D ++  +++  + +  +  
Sbjct: 260 FPLYLDYSD-EQYEAVEKAATAHDLAGAIATEGKQARDLATDAVRDAVLADLAEQFGTEE 318

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +   + + F+ +  K+VR   L + +RMDGR  + +R + A+V +L R HGS++F RG+T
Sbjct: 319 DVKALKAAFKSVTKKLVRHRTLTEGIRMDGRGLKDIRTLGAEVEVLPRVHGSAIFERGET 378

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ +D LS      +M  Y F P +TGE  R+GAP RREIGHG LA 
Sbjct: 379 QIMGVTTLNMLRMEQQIDDLSPITHKRYMHQYIFPPFSTGETGRVGAPKRREIGHGALAE 438

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL
Sbjct: 439 RALVPVIPSRDEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 498

Query: 467 VKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           + +  D    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+  +++  AL 
Sbjct: 499 MHEEIDGETKWATLTDILGSEDAFGDMDFKVAGTREFITALQLDTKLDGLPSDVLAGALG 558

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  R  IL+ M + +     ++    PRV  + IP D+I  VIG  GK+I  I E TG
Sbjct: 559 QARDARFFILDVMEQAIDGP-DEMAPTAPRVLTVHIPVDKIGEVIGPKGKMINQIQEDTG 617

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + ++DDGTV I +S     EAAR+ + +I    +PE+ + + G VVK   FGAFV   
Sbjct: 618 ADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFGAFVSLT 677

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L
Sbjct: 678 PGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSL 726


>gi|312139341|ref|YP_004006677.1| polyribonucleotide nucleotidyltransferase pnp [Rhodococcus equi
           103S]
 gi|311888680|emb|CBH47992.1| polyribonucleotide nucleotidyltransferase Pnp [Rhodococcus equi
           103S]
          Length = 752

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/711 (38%), Positives = 415/711 (58%), Gaps = 40/711 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  YGTRTVRFETGRLAQQAAGAVVAYLDDETMLLSATSASKQPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ V+  D +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDEDQGS-LDLFVSGT- 181
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ + +  D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRV 204

Query: 182 ----QDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
                 A++MVE EA +             +E +V + +         +  A   LA+  
Sbjct: 205 VESGDVAIMMVEAEATENVISLIDGGAQAPTEAIVAEGLEAAKPFIASLCGAQQALAEKA 264

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKED----LRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
           AK     +   F   ++++   +++     L  +  I  K  R  + D++K +++   + 
Sbjct: 265 AKP--TGEYPLFPAYQDDVYAAVEKAAAAPLSEALSIAGKQERDDKTDEVKAEVLEQVAP 322

Query: 282 EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           +     E EI + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HGS+LF
Sbjct: 323 QFEG-REKEIGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAVIPRAHGSALF 381

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RREIGH
Sbjct: 382 ERGETQIMGVTTLDMVKMAQQVDSLGPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGH 441

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAG
Sbjct: 442 GALAERALVPVLPSQEEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAG 501

Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGLV D  D    ++ L+DI G ED  G MDFKVAGT + +TA+Q+D K+ GI   ++
Sbjct: 502 IAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTKNFVTALQLDTKLDGIPSQVL 561

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA   R  IL  M++ +     ++  + PR+  + +P D+I  VIG  GK+I  I
Sbjct: 562 AGALSQAHDARTTILEVMAEAIDAP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSI 620

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGA 635
            E+TGA ++I+DDGTV + ++     +AA + I +I    +P+V + + G VVK   FGA
Sbjct: 621 TEETGANISIEDDGTVYVGAADGPSAQAAIDKINAIANPQLPKVGERFLGTVVKTTAFGA 680

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FV     RDGLVHIS+L   +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 681 FVSLLPGRDGLVHISKLGNGKRIAKVEDVVNVGSKLRVEIADIDNRGKISL 731


>gi|289705304|ref|ZP_06501702.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micrococcus luteus SK58]
 gi|289557967|gb|EFD51260.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micrococcus luteus SK58]
          Length = 753

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/716 (38%), Positives = 412/716 (57%), Gaps = 43/716 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    E T +L+     +S ++G DFFPLTV+ +ER YA
Sbjct: 18  YGKRTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV++ V     +     V
Sbjct: 78  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDEDQGS-LDLFVSGT-- 181
           ++ AAS +  LSGLPF GP+ G ++  ++      Q+V  P+  + +G+  ++ V+G   
Sbjct: 138 AINAASLSTQLSGLPFSGPIGGVRMALMDDGSGTRQWVAFPKHSQLEGAVFNMAVAGRVV 197

Query: 182 --QDAVLMVELEAN-------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
               A++MVE EA                +E++V + +       + + EA + L K   
Sbjct: 198 GDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALCEAQADLVKRAG 257

Query: 227 KEPIVI----DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K+P+ +    D +D +     + ++  + L     I +K  R    D    +++   + E
Sbjct: 258 KDPVDVPVFQDYQDDAY--AAVEKLATDRLAEIFSIGDKQERESASDAYLLEVLEELAGE 315

Query: 283 HSSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
              + E  GEI   +  +  ++VR  +L  +VR+DGR    +R ++A+V +L R HGS++
Sbjct: 316 GKDFAERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAI 375

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   + EQ +DSL+      +M HYNF P +TGE  R+G+P RREIG
Sbjct: 376 FERGETQIMGVTTLNMLKMEQQIDSLAPETAKRYMHHYNFPPYSTGETGRVGSPKRREIG 435

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 436 HGALAERALVPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 495

Query: 461 GIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGLV    D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  ++
Sbjct: 496 GIAMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASV 555

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RLHIL+ ++  +     ++    PR+  + IP D+I  VIG  G +I  
Sbjct: 556 LAAALTQAREARLHILSVLNAAIDAP-DEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQ 614

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFG 634
           I + TGA + I+DDGTV I ++  A  EAAR  + +I    VPEV + Y G VVK+  FG
Sbjct: 615 IQDDTGADITIEDDGTVLIGATDGASAEAARSAVNAIANPQVPEVGERYLGTVVKLTTFG 674

Query: 635 AFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           AFV     +DGL+HIS+L      +RV    DV+  G  V V++   DDRGK+ LS
Sbjct: 675 AFVSLTPGKDGLLHISELRKLNEGKRVDDVEDVLGVGQKVQVEITKIDDRGKLSLS 730


>gi|125773375|ref|XP_001357946.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
 gi|195165852|ref|XP_002023752.1| GL27239 [Drosophila persimilis]
 gi|54637680|gb|EAL27082.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
 gi|194105912|gb|EDW27955.1| GL27239 [Drosophila persimilis]
          Length = 769

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/717 (35%), Positives = 409/717 (57%), Gaps = 30/717 (4%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +V +VE+++  GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V
Sbjct: 36  EVPSVEVKFSNGRNMSISSGKLARFANGTAVCQMGDTAVMVTAVAKPKPTPGQNFMPLVV 95

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+ ETQ++ N++  D
Sbjct: 96  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFNKDYRTETQLVCNMLAMD 155

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP ++++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 156 AVHSPDILAINAASMALSLSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLDLVVSA 215

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD--F 237
           T+ + V+M+E + N +    +L AI  G  E + +I+ I +L K   ++   ++S +   
Sbjct: 216 TKQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIQEIERLQKAYGRKKREVESPNRVD 275

Query: 238 SKLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
            +L+E +  M +  LR        +K  R   +++++  ++    S +     G I   F
Sbjct: 276 PELQEAVRSMCEMRLREIFQDANHDKISRDNAVNEVRSNVIDKVWSSYPDTEPGVIGEEF 335

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
                 + R ++ ++  R DGRD +T+R+IS QV + +  HGS+LF RG TQ    V+L 
Sbjct: 336 NQTCRSIFRELIFERNYRCDGRDYDTLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLD 395

Query: 356 TREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           + E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ 
Sbjct: 396 SPESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERSLL 455

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV   
Sbjct: 456 PTLP--HDYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKY 513

Query: 471 D--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           +        D+ IL+DI G ED++G MD KVAGT  G TA+Q D+K+ GI   +++ +LQ
Sbjct: 514 ENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKVPGIPLKVVMESLQ 573

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +A   +  IL+ M++ + E R    +  P  E +++ P Q   +IG  G  ++ I  +TG
Sbjct: 574 KATDAKSKILDIMAEAIREPRKYPKDSWPVSETISVEPHQRSQLIGPSGLHMKRIYLETG 633

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           A +   D+    + + S A ++ A+E     M++      E   IY  +V ++ D G  V
Sbjct: 634 ATLTAADESHFAVFAPSQAAMDEAKELIEGYMVKERIPDLEFGGIYTAKVTELRDTGVMV 693

Query: 638 HF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                    L+H SQL   ++   S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 694 ILYPSMPPALLHNSQLDQRKIGHPSALGLEVGQDIQVKYFGRDPVSGFMRLSRKVLQ 750


>gi|126304424|ref|XP_001382164.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 785

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/715 (35%), Positives = 396/715 (55%), Gaps = 31/715 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             TV ++  GR L++ +GR+AR +DG  +   GET V+ T V        Q F PL V+Y
Sbjct: 44  PRTVTVDLGGRKLEISSGRLARFADGCAVVQSGETAVMVTAVSKTKPSPSQ-FMPLVVDY 102

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +++  A G+IP  +LRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  
Sbjct: 103 KQKAAAAGRIPTNHLRREFGSSDKEILTSRIIDRSIRPLFPSGYFYDTQVLCNLLAVDSV 162

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           + P V+++  ASAAL LS +P+ GP+   ++  I+G+Y++NP   E    +L+L V+G  
Sbjct: 163 NEPDVLAINGASAALSLSDIPWNGPIGAVRIGIIDGEYIVNPTRKEMSYSTLNLVVAGAP 222

Query: 183 DA-VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           ++ ++M+E  A  + +     AI  G    + +I+ I KL K   +       K FS   
Sbjct: 223 NSQIVMLEAAAENVLQQDFCHAIKVGMKHNQQIIQGIQKLMKESGRVKRT-PQKLFSAPP 281

Query: 242 EEMSQMIKEDLRVSC-----FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E +  + K  +         +  +K  R   I+ ++  +      +    +  EI+  F 
Sbjct: 282 EMVKFVNKHAMERIYAVFTDYNHDKVSRDDAINKIRLDIEELIKEKFPEADPYEIIESFN 341

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +   V R+++L++  R DGRD  ++RDIS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 342 VVSKDVFRSIVLNEYRRCDGRDLTSLRDISCEVDMFRTLHGSALFQRGQTQVLCTVTFDS 401

Query: 357 REDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     D    ++SG +  +FM+HY F P AT E  ++   +RRE+GHG LA ++++PV
Sbjct: 402 LESSLKSDPITTAISGIKEKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKSLYPV 461

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK---- 468
           +P    FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GL+     
Sbjct: 462 IP--KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLIAKNSS 519

Query: 469 ----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
               + +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA
Sbjct: 520 NKEGEIEDYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAIQQA 579

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  QTG  
Sbjct: 580 TAAKREILQIMNKTISKPRESRKENGPVVETVQVPLTKRAKFVGPGGYNLKRLQAQTGVT 639

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF 639
           VN  D+ T  + + + + +  ARE I  I         E   +Y   + ++ D G  +  
Sbjct: 640 VNQVDEETFSVFAPTPSAMNEAREFITEICKDDQEHQLEFGAVYTATITEIRDTGVMIKL 699

Query: 640 -CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                  L+H SQL   +V   S + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 700 YPNMTAVLLHNSQLDQRKVKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 754


>gi|329944611|ref|ZP_08292751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530164|gb|EGF57047.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 790

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/708 (38%), Positives = 400/708 (56%), Gaps = 34/708 (4%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  ++ + +  + V+G        
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           A++MVE  A +             +E VV + +       K + EA  ++A+  +K    
Sbjct: 200 AIMMVEAGATEHAWELINAGSVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 232 ID-SKDFSKLEEEMSQMIKED--LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWN 287
                D+S  + +  +   E   L  +     K  R    D ++ ++++  +       +
Sbjct: 260 FPLYLDYSDEQYDAVEKAAEAHGLAGAIATEGKQARDLATDAVRDEVLAELAESFPTEED 319

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
              + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++F RG+TQ
Sbjct: 320 TKALKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQ 379

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIGHG LA R
Sbjct: 380 ILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIGHGNLAER 439

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+
Sbjct: 440 ALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLM 499

Query: 468 KD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            +       +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   ++  AL Q
Sbjct: 500 HEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEVLAGALGQ 559

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RL IL+ +++ +     ++    PRV  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 560 ARDARLFILDVLAQAIDSP-DEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQIQEDTGA 618

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            + ++DDGTV I +S     EAAR+ + +I    +PE+ + + G VVK   FGAFV    
Sbjct: 619 DLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFGAFVSLTP 678

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L
Sbjct: 679 GKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSL 726


>gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Anolis carolinensis]
          Length = 765

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/723 (35%), Positives = 401/723 (55%), Gaps = 32/723 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            HTV +E   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y
Sbjct: 24  THTVSVEVGSRKLEISSGKLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQ-FMPLVVDY 82

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +++  A G+IP  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  
Sbjct: 83  RQKAAAAGRIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYYYDTQILCNLLAVDGV 142

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV-SGT 181
           + P V+++  ASAAL LS +P+ GP+   +V  I+G+ V+NP   E   S LDL V S  
Sbjct: 143 NDPEVLAINGASAALTLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSSTLDLIVSSAP 202

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +  V+M+E  A  + +     AI  G    + +I+ I +LAK        +  K F+  E
Sbjct: 203 RSQVVMLEAAAENVLQQDFCHAIKVGVKHGQQIIQGIQQLAKEQGVPKRTVQ-KLFTAPE 261

Query: 242 EEM---SQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           E +    Q+  E +    S F  +K  R + I+ ++ +       +       EI+  F 
Sbjct: 262 ETVECAKQLASEKITAVFSDFTHDKISRDEAINKIRLETEEQLKEKFPDSEPYEIMEAFN 321

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +   + R ++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  +
Sbjct: 322 VVSKDIFRNLILNEYRRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDS 381

Query: 357 REDEQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E     D    ++SG +  +FM+HY F P AT E+ ++ + +RRE+GHG LA +A+ PV
Sbjct: 382 LESSVKSDLITTAISGIKEKNFMLHYEFPPYATNEIGKISSMNRRELGHGALAEKALKPV 441

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK---- 468
           +P    FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV     
Sbjct: 442 IPNE--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTSPNS 499

Query: 469 ----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
               D +++ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA
Sbjct: 500 EKNGDIENYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPLKIVMEAIQQA 559

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              +  IL  M+K + + R    E  P VE + +P  +    +G GG  ++ +  +TG  
Sbjct: 560 TVAKREILQIMNKTIGKPRASRKENGPLVETVQVPLSKRARFVGPGGYNLKKLQAETGVT 619

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF 639
           V+  D+ T  I + + A +  A+E I  +         E   IY   + ++ D G  V  
Sbjct: 620 VSQVDEETFSIFAPTPAAMHEAQEFITEVCKDDQDYQLEFGAIYTATITELRDIGVMVKL 679

Query: 640 -CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
                  L+H SQL   ++   S + ++ G  + VK    D   G+++LS KV+ Q+   
Sbjct: 680 YPNMTPVLLHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL-QSPAS 738

Query: 697 PIV 699
            +V
Sbjct: 739 SVV 741


>gi|239917238|ref|YP_002956796.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Micrococcus luteus NCTC 2665]
 gi|281414287|ref|ZP_06246029.1| polynucleotide phosphorylase/polyadenylase [Micrococcus luteus NCTC
           2665]
 gi|259534137|sp|C5C9U0|PNP_MICLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239838445|gb|ACS30242.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Micrococcus luteus NCTC 2665]
          Length = 753

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/714 (38%), Positives = 409/714 (57%), Gaps = 39/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +    E T +L+     +S ++G DFFPLTV+ +ER YA
Sbjct: 18  YGKRTVRFETGRLAQQAAGAAMVYLDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV++ V     +     V
Sbjct: 78  SGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIYDTV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDEDQGS-LDLFVSGT-- 181
           ++ AAS +  LSGLPF GP+ G ++  ++      Q+V  P+  + +G+  ++ V+G   
Sbjct: 138 AINAASLSTQLSGLPFSGPIGGVRMALMDDGSGARQWVAFPKHSQLKGAVFNMAVAGRVV 197

Query: 182 --QDAVLMVELEAN-------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
               A++MVE EA                +E++V + +       + + EA + L K   
Sbjct: 198 GDDVAIMMVEAEATPDSWTLVKERGAQAPTEEIVAEGLEAAKPFIRALCEAQADLVKRAG 257

Query: 227 KEPIVID-SKDF-SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS 284
           K+P+ +   +D+       + ++  + L     I +K  R         +++   + E  
Sbjct: 258 KDPVDVPVFQDYQDDAYAAVEKLATDRLTEIFSIADKQERESASYAYLLEVLEELAGEGK 317

Query: 285 SWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
            + E  GEI   +  +  ++VR  +L  +VR+DGR    +R ++A+V +L R HGS++F 
Sbjct: 318 DFAERKGEIAKAYGSLTKQIVRRRILTDQVRIDGRGLTDIRKLTAEVEVLPRVHGSAIFE 377

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG+TQ + V TL   + EQ +DSLS      +M HYNF P +TGE  R+G+P RREIGHG
Sbjct: 378 RGETQIMGVTTLNMLKMEQQIDSLSPETAKRYMHHYNFPPYSTGETGRVGSPKRREIGHG 437

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAGI
Sbjct: 438 ALAERALVPVLPAREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAHVAGI 497

Query: 463 AMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGLV    D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++ 
Sbjct: 498 AMGLVSAEVDGQTQYAALTDILGAEDAFGDMDFKVAGTAEFVTAIQLDTKLDGIPASVLA 557

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL QA+  RLHIL+ ++  +     ++    PR+  + IP D+I  VIG  G +I  I 
Sbjct: 558 SALTQAREARLHILSVLNAAIDAP-DEMAPTAPRIISVRIPVDKIGAVIGPKGAMINQIQ 616

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAF 636
           + TGA + I+DDGTV I ++  A  EAAR  + +I    VPEV + Y G VVK+  FGAF
Sbjct: 617 DDTGADITIEDDGTVLIGATDGASAEAARSAVNAIANPQVPEVGERYLGTVVKLTTFGAF 676

Query: 637 VHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V     +DGL+H+S+L      +RV    DV+  G  V V++   DDRGK+ LS
Sbjct: 677 VSLTPGKDGLLHVSELRKLNEGKRVDDVEDVLGVGQKVQVEITKIDDRGKLSLS 730


>gi|227504840|ref|ZP_03934889.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           striatum ATCC 6940]
 gi|227198531|gb|EEI78579.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           striatum ATCC 6940]
          Length = 746

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/716 (38%), Positives = 409/716 (57%), Gaps = 43/716 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG +ARQ+ G+V      +T++L+T       ++G DFFPLTV+ +ER Y
Sbjct: 28  DFGTRTIRFETGLLARQAGGSVTTYLDEDTMLLSTTTASNQPREGFDFFPLTVDVEERMY 87

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+    E    V
Sbjct: 88  AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMAPEEYYDV 147

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           +++  ASA+  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 148 IAINGASASTQLSGLPVSGAVGGVRMALIADDKHPKGQWVAFPNHEQHERALFEMVVAGR 207

Query: 182 --------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKL 221
                     A++MVE  A     + + +         +  G    KP I    EA + L
Sbjct: 208 IVKKGNKEDVAIMMVEAGAGTNVAERIKEGAPAPQESTVAEGLEAAKPFIKTLCEAQAGL 267

Query: 222 AKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
           A+  AKE    P+     D   +   + +   + L     IP K  R    ++  +++ +
Sbjct: 268 AERAAKETQEFPLFPPYTD--DVFAAVEKAASKKLEKLLTIPGKQDRDDATNEYMEQVEA 325

Query: 278 YFSSEHSSWNE-GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
               +    +   +I + +  +   +VR  +L +  R+DGR    +RD+  +V L+ R H
Sbjct: 326 DLHEKFEDEDASKQIRAAYNAVMKAIVRKKILTEGFRIDGRGVTDIRDLGVEVDLIPRAH 385

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GSSLF RG+TQ + V TL   + EQ +DSL+      +M HYNF P +TGE  R+G+P R
Sbjct: 386 GSSLFERGETQILGVTTLDMLKMEQQIDSLTPVTGKRYMHHYNFPPYSTGETGRVGSPKR 445

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L +AGVP+ 
Sbjct: 446 REIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPLK 505

Query: 457 KPVAGIAMGLVKDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV       + F+ L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI
Sbjct: 506 APVAGIAMGLVSGEVDGKEKFVALTDILGAEDAFGDMDFKVAGTSEYITALQLDTKLDGI 565

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
              ++  AL+QA+  R  IL+ M++V+     ++    P++  + IP ++I  +IG  GK
Sbjct: 566 PSKVLAQALEQARDARATILDTMAEVIEGP-DEMSGLAPKITSVKIPVNKIGELIGPKGK 624

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKV 630
            I  I E+TGA+V+I++DGTV I++++    +AA E + SI    +P+V + + G VVK 
Sbjct: 625 TINSITEETGAEVSIEEDGTVYISAATGEAADAAIEKVNSIANPQLPKVGERFLGTVVKT 684

Query: 631 MDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           + FGAFV     RDGL+HIS+L   ER+ K  DVV  GD + V++ D D+RGKI L
Sbjct: 685 VAFGAFVSLTPGRDGLIHISKLGGDERIEKVEDVVNVGDKIQVEIADIDNRGKISL 740


>gi|220912209|ref|YP_002487518.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter
           chlorophenolicus A6]
 gi|254782702|sp|B8HG67|PNP_ARTCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219859087|gb|ACL39429.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arthrobacter chlorophenolicus
           A6]
          Length = 752

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/713 (38%), Positives = 412/713 (57%), Gaps = 41/713 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +     +T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQ----YVLNPRLDEDQGS-LDLFVSGT--- 181
           ++ A+S +  LSGLPF GP+ G +V  +  +    +V  P+  + + S  ++ V+G    
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVADENGSQWVAFPKHSQLENSVFNMVVAGRVAG 197

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   S +++          + +  G    KP I+A+            K
Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCDAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+ +D +D   +   +     + L     I +K  R    D LK ++ S  + + 
Sbjct: 258 PTVEFPVFLDYQD--DVYAAVEAAAADKLAAVFQIADKQERDTASDALKDEVTSSLAGQF 315

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F  +   VVR  +L  ++R+DGR    +R ++A+V +L R HGS++F R
Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQIRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAGIA
Sbjct: 435 LAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E
Sbjct: 555 ALKQAREARLHILEVINSAIDTP-DELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +++    +AAR  I +I    VPE+ + Y G VVK   FGAFV
Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFV 673

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS+L      +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 674 SLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLS 726


>gi|260578909|ref|ZP_05846813.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602961|gb|EEW16234.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 764

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/731 (38%), Positives = 396/731 (54%), Gaps = 57/731 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG +ARQ+DGAV A    +T++L+T    R  ++G DFFPLTV+ +ER Y
Sbjct: 30  DFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMY 89

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VG+IPG + RRE RP  + IL +R+IDR +RP F +  +NE QVI+ V+  D +    V
Sbjct: 90  SVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRYDV 149

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSGT 181
           +++  ASA+  LSGLP  GPV G ++  +       GQ+V  P  ++++ +  +L V+G 
Sbjct: 150 LAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVAGR 209

Query: 182 ------------------------QDAVLMVELEAN------------QLSEDVVLDAII 205
                                     AV+MVE  A               +E+VV   I 
Sbjct: 210 VTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGATDNVVERIAEGAPAPTEEVVAQGIE 269

Query: 206 FGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
                   + EA + LAK    E    +        +   +     + L     I +K  
Sbjct: 270 AAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDIMAIADKQE 329

Query: 264 RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVR 323
           R + +    +  V     E     E EI +   ++   VVR  +L+   R+DGRDS T+R
Sbjct: 330 RDEALAANMQANVDELLPEFPE-REAEIRAAHNEVTKAVVRRRILEDGFRIDGRDSTTIR 388

Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           D+   V L+ R HGS+LF RG+TQ + V TL   + EQ +DSL       ++ HYNF P 
Sbjct: 389 DLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYIHHYNFPPY 448

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           +TGE  R+G+P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+SM +VC 
Sbjct: 449 STGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGSTSMGSVCA 508

Query: 444 SSLALMDAGVPISKPVAGIAMGLVK------DGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           S+L+L +AGVP+  PVAGIAMGLV         D ++ L+DI G ED  G MDFKVAGT 
Sbjct: 509 STLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDMDFKVAGTP 568

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
             +TA+Q+D K+ GI  +++  ALQQA+  RL IL  M + +      + +  P +  + 
Sbjct: 569 DFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAIDSP-DDMSDLAPHITSIN 627

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--D 615
           IP ++I  VIG  GK I  I E+TGA + I+DDGTV I++        A E I +I    
Sbjct: 628 IPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEKINAIANPQ 687

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKL 674
            P+V   + G VVK   FGAFV     RDGL+HIS L    R+ +  D V  GD + V++
Sbjct: 688 QPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSVGDKLEVEI 747

Query: 675 LDFDDRGKIKL 685
            D D+RGKI L
Sbjct: 748 ADIDNRGKISL 758


>gi|68536209|ref|YP_250914.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           jeikeium K411]
 gi|123650906|sp|Q4JV61|PNP_CORJK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68263808|emb|CAI37296.1| polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium
           K411]
          Length = 764

 Score =  648 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/731 (38%), Positives = 396/731 (54%), Gaps = 57/731 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG +ARQ+DGAV A    +T++L+T    R  ++G DFFPLTV+ +ER Y
Sbjct: 30  DFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMY 89

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           +VG+IPG + RRE RP  + IL +R+IDR +RP F +  +NE QVI+ V+  D +    V
Sbjct: 90  SVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRYDV 149

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSGT 181
           +++  ASA+  LSGLP  GPV G ++  +       GQ+V  P  ++++ +  +L V+G 
Sbjct: 150 LAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVAGR 209

Query: 182 ------------------------QDAVLMVELEAN------------QLSEDVVLDAII 205
                                     AV+MVE  A               +E+VV   I 
Sbjct: 210 VTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGATDNVVERIAEGAPAPTEEVVAQGIE 269

Query: 206 FGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
                   + EA + LAK    E    +        +   +     + L     I +K  
Sbjct: 270 AAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDIMAIADKQE 329

Query: 264 RCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVR 323
           R + +    +  V     E     E EI +   ++   VVR  +L+   R+DGRDS T+R
Sbjct: 330 RDEALAANMQANVDELLPEFPE-REAEIRAAHNEVTKAVVRRRILEDGFRIDGRDSTTIR 388

Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           D+   V L+ R HGS+LF RG+TQ + V TL   + EQ +DSL       ++ HYNF P 
Sbjct: 389 DLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYIHHYNFPPY 448

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           +TGE  R+G+P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+SM +VC 
Sbjct: 449 STGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGSTSMGSVCA 508

Query: 444 SSLALMDAGVPISKPVAGIAMGLVK------DGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           S+L+L +AGVP+  PVAGIAMGLV         D ++ L+DI G ED  G MDFKVAGT 
Sbjct: 509 STLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDMDFKVAGTP 568

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
             +TA+Q+D K+ GI  +++  ALQQA+  RL IL  M + +      + +  P +  + 
Sbjct: 569 DFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAIDSP-DDMSDLAPHITSIN 627

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--D 615
           IP ++I  VIG  GK I  I E+TGA + I+DDGTV I++        A E I +I    
Sbjct: 628 IPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEKINAIANPQ 687

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKL 674
            P+V   + G VVK   FGAFV     RDGL+HIS L    R+ +  D V  GD + V++
Sbjct: 688 QPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSVGDKLEVEI 747

Query: 675 LDFDDRGKIKL 685
            D D+RGKI L
Sbjct: 748 ADIDNRGKISL 758


>gi|300780976|ref|ZP_07090830.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           genitalium ATCC 33030]
 gi|300532683|gb|EFK53744.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           genitalium ATCC 33030]
          Length = 759

 Score =  648 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/720 (38%), Positives = 409/720 (56%), Gaps = 47/720 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+ G+V     + T++L+TV      ++G DFFPLTV+ +ER Y
Sbjct: 33  DFGERTIRFETGQLARQAGGSVTTYLDDDTMLLSTVTASNQPREGFDFFPLTVDVEERMY 92

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ VM  + E    V
Sbjct: 93  AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSWNPEEYYDV 152

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSGT 181
           V++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +  ++ V+G 
Sbjct: 153 VAINGASAATQLSGLPVSGAVGGVRMALIADDQHPEGQWVAFPNHEQHEAAVFEMVVAGR 212

Query: 182 ------------QDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEA 217
                         A++MVE  A               +E  V + +       + + EA
Sbjct: 213 IVEKKKGRKKVQDVAIMMVEAGAGANAVKLIDGGAPAPTERTVAEGLEAAKPFIQTLCEA 272

Query: 218 ISKLAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273
            + LA   AKE    P+     D  ++ + + +   + L     IP K+ R    ++  +
Sbjct: 273 QNALADKSAKETQDFPLFPPYSD--EVFDAVEKKASKKLSKLLTIPGKHERDDATNEYME 330

Query: 274 KMVSYFSSEHSSWNE-GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
           ++ +      +  +   EI + +  +  ++VR  +L +  R+DGR    +RD+  +V L+
Sbjct: 331 EIEADLLETFAGEDASKEIRAAYNAVMKQIVRDKILSEGFRIDGRGVTDIRDLEVEVELI 390

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGSSLF RG+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE  R+G
Sbjct: 391 PRAHGSSLFERGETQILGVTTLDMLKMEQQLDSLHPETSKHYIHHYNFPPYSTGETGRVG 450

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+SM +VC S+L+L +AG
Sbjct: 451 SPKRREIGHGALAERALIPVIPSKEDFPYTIRQVSEALGSNGSTSMGSVCASTLSLYNAG 510

Query: 453 VPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           VP++ PVAGIAMGLV    D    ++ L+DI G ED  G MDFKVAGT   ITA+Q+D K
Sbjct: 511 VPLAAPVAGIAMGLVSGEVDGETKYVALTDILGAEDAFGDMDFKVAGTSEFITALQLDTK 570

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + GI  +++  AL QAK  R  IL+ M++V+     ++    P++  + +P  +I  VIG
Sbjct: 571 LDGIPSDVLASALDQAKEARETILDTMAEVIEGP-DEMSALAPKITTVRVPVSKIGEVIG 629

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQ 626
             GK I  I E TGA V+I+DDGT+ +++++    +AA E I SI     P+V + Y G 
Sbjct: 630 PKGKTINQITEDTGADVSIEDDGTIYVSAATGEAADAAIEQINSIANPQQPKVGERYLGT 689

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           VVK + FGAFV     RDGLVHIS+L   +R+    DVV  GD + V++ D D+RGKI L
Sbjct: 690 VVKTVAFGAFVSLTPGRDGLVHISKLGGDKRIENVEDVVNVGDKIEVEIADIDNRGKISL 749


>gi|195391142|ref|XP_002054222.1| GJ22920 [Drosophila virilis]
 gi|194152308|gb|EDW67742.1| GJ22920 [Drosophila virilis]
          Length = 769

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/716 (35%), Positives = 401/716 (56%), Gaps = 30/716 (4%)

Query: 4   VHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           V  VE+ +  GR + + +G++AR ++G  +   G+T V+ T V       GQ+F PL V+
Sbjct: 36  VPAVEVSFSNGRNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKATPGQNFMPLVVD 95

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF+K Y+NETQ++ N++  D 
Sbjct: 96  YRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDA 155

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT 181
             SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T
Sbjct: 156 VHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLNDGEVLINPTRRELQSSQLDLVVSAT 215

Query: 182 Q-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFS 238
           + + V+M+E + N +    +L AI  G  E + +I  I +L K   +    +D   +  S
Sbjct: 216 KQNLVVMLEGKGNVVLMQDLLKAIKQGTREAQFIIHEIERLQKAYGRHKREVDALPEANS 275

Query: 239 KLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           +L + +  M +  LR        +K  R   +++++  ++    S +   +   I   F 
Sbjct: 276 ELVQAVKSMCEMRLREIFQDAQHDKISRDTAVNEVRSNVIDKVWSSYPDTDPAAIGEEFN 335

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
                + R ++ +   R DGRD +++R+IS QV + +  HGS+LF RG TQ    V+L +
Sbjct: 336 KACRDIFRELIFESNRRCDGRDYDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDS 395

Query: 357 REDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            E    +D+L      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P
Sbjct: 396 PESAMKLDTLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPLGRRELGHGALAERSLLP 455

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP++ P AG+A+GLV   +
Sbjct: 456 TLP--HDYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYE 513

Query: 472 --------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
                   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+
Sbjct: 514 NNDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQK 573

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A   +  IL+ M + + E R    +  P  E +A+ P Q   +IG  G  ++ I  +TG 
Sbjct: 574 ATDAKSKILDIMGESIKEPRKYRKDCWPVSERLAVEPHQRAQLIGPSGLHMKRIYLETGT 633

Query: 584 KVNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            +   DD T  + + S A ++ A+E     M +      E   IY  ++ ++ D G  V 
Sbjct: 634 TLTAADDSTFTVFAPSQAALDEAKELIDGYMHKERVPDLEFGGIYTAKITELRDTGVMVT 693

Query: 639 F-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                   L+H SQL   ++A  S + ++    + VK    D   G ++LS KV+ 
Sbjct: 694 LYPSMPPALLHNSQLDQRKIAHPSALGLEVDQEIQVKYFGRDPVSGFMRLSRKVLQ 749


>gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia
           guttata]
          Length = 936

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/711 (35%), Positives = 397/711 (55%), Gaps = 30/711 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V +E  GR ++L +G++A+ +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 200 VTVEVGGRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 258

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P
Sbjct: 259 AAAAGRIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNDP 318

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  ASAAL LS +P+ GP+   +V  ++G+ V+NP   E   S L+L V+G     
Sbjct: 319 DILAINGASAALALSDIPWNGPIGAVRVGLVDGETVINPTRKEMSSSALNLVVAGALHSQ 378

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE-- 242
           V+M+E  A  + +     AI  G  + + +I+AI +L K        +  K F   EE  
Sbjct: 379 VVMLEATAENILQQDFCHAIKVGVKQTQQIIQAIQQLVKEQGVVKRTVQ-KLFIAPEEIV 437

Query: 243 EMSQMIKEDLRVSCFI---PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           E+++ +  +   + F     +K  R + I+ ++ +       +       EI+  F  + 
Sbjct: 438 ELAKKLASNKIYAVFTDSSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNVVS 497

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             + R ++L++  R DGRD  ++RDI  +V + +  HGS+LF RG TQ +  VT  + E 
Sbjct: 498 KDIFRNLVLNEYRRCDGRDLTSLRDIKCEVNMFRMLHGSALFQRGQTQVLCTVTFDSLES 557

Query: 360 EQYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
               D    ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA+ PV+P 
Sbjct: 558 SVKSDLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGMNRRELGHGALAERALKPVIP- 616

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK------- 468
              FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GLV        
Sbjct: 617 -QDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTKCSQGKG 675

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           D +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q+D+K+ GI   I+V A+QQA   +
Sbjct: 676 DIEDYRLLTDILGIEDYYGDMDFKMAGTNKGITALQVDLKLPGIPIKIVVEAIQQATAAK 735

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL+ M++ L++ R    E  P VE + +P  +    +G G   ++ +  QTG  V+  
Sbjct: 736 REILHIMNQTLAKPRPNRKESGPVVETIHVPLSKRLRFVGPGAYNLKKLQAQTGVTVSQL 795

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDV-----PEVNKIYKGQVVKVMDFGAFVHF-CGA 642
           D+ T  + + +   +  ARE I  I         E   IY   + ++ D G  V      
Sbjct: 796 DEETYSVFAPTPGAMHEAREFIGEICKDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNM 855

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              L+HISQL   ++   S + ++ G  + VK    D   G+++LS K++ 
Sbjct: 856 TPVLLHISQLDQRKIKHPSALGLEVGHEIQVKYFGRDPTDGRMRLSRKILQ 906


>gi|149371588|ref|ZP_01891004.1| polynucleotide phosphorylase/polyadenylase [unidentified
           eubacterium SCB49]
 gi|149355215|gb|EDM43775.1| polynucleotide phosphorylase/polyadenylase [unidentified
           eubacterium SCB49]
          Length = 739

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/701 (38%), Positives = 427/701 (60%), Gaps = 18/701 (2%)

Query: 9   IEWA-GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           I+   GR + +ETG++A+Q+ G+V+   G+ ++L TVV +   KD   F PLTV+Y+E+ 
Sbjct: 10  IDLGDGREITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKD-LPFLPLTVDYREKF 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            A G+ PGG+ +RE+RP++ E+L  R++DR +RPLF K Y  ETQV+I +M HD +  P 
Sbjct: 69  AAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKNYSAETQVMIQLMSHDDDVMPD 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVL 186
            ++ +AASAA+ LS  PFE  +  A+V  ++G++++NP   + ++  +D+ +  + D+V+
Sbjct: 129 AMAGLAASAAIQLSDFPFECAISEARVGRVDGKFIINPTRAQLEESDIDMMIGASADSVM 188

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLEEEM 244
           MVE E +++SE+ +++AI F H   K  I+A  +LA    K+ +    +  D  +L + +
Sbjct: 189 MVEGEMDEISEEEMIEAIKFAHEAIKVQIDAQLRLADAVGKKEVREYEEAGDDEELVKRV 248

Query: 245 SQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
             +  + +   +     K  R      +K+++   F+ E      G +   +   +   V
Sbjct: 249 HDLAYDKVYAVAKAGSTKQERTAAFAAIKEEVKETFTEEELEEYGGLVSEYYRKAEKAAV 308

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R + +++ +R+DGR ++ VRDI  ++  L   HGS++F RG+TQA+  VTLGT  D   +
Sbjct: 309 RDLTVNEGLRLDGRKTDEVRDIWCEIDYLPSVHGSAVFTRGETQALATVTLGTSRDANKI 368

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D  S     +F +HYNF P  TGE   +   SRRE+GHG LA+R +  ++P     PYT+
Sbjct: 369 DMPSYEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIP--EDCPYTV 426

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISG 481
           R+VSE+ ES+GSSSMATVC  ++A+MDAG+ ++KPV+GIAMGL+ D +   + +L+DI G
Sbjct: 427 RVVSEVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMGLISDAETGKYAVLTDILG 486

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           DED+LG MDFKV GT  GITA QMD+K+ G+S  I+V AL+QA+ GRLHIL ++   ++ 
Sbjct: 487 DEDYLGDMDFKVTGTADGITACQMDIKVKGLSYEILVSALKQARDGRLHILEKIVATIAT 546

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-----GTVKIA 596
            R  + ++ P++  + I  + I  +IG GGKVI+ + ++TG  + I++D     G V+I 
Sbjct: 547 PREDVKDYAPKMVGVRIANEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIVEIL 606

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLST 654
            +    I+A    I SIT  P V   Y+ +V+K++DFGA V +      + L+H+S+L+ 
Sbjct: 607 GTGQEGIDAVLAKIDSITFKPVVGSAYEVKVIKMLDFGAVVEYTEAPGNEVLLHVSELAW 666

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           ER    SDVV  GD   VK    D R +  K+S K + +  
Sbjct: 667 ERTENVSDVVNMGDVFDVKYFGIDKRTRKEKVSRKALLEKP 707


>gi|269956017|ref|YP_003325806.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304698|gb|ACZ30248.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Xylanimonas cellulosilytica DSM
           15894]
          Length = 744

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/707 (38%), Positives = 414/707 (58%), Gaps = 36/707 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V A   GET++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLARQAAGSVAAYLDGETMLLSATTAGKHPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R+IDR +RPLF K  +NE QV++ V+    + +  V+
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLAIHPDDAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AAS +  +SGLPF GPV G ++  I+GQ+V  P+  + +    ++ V+G       A
Sbjct: 138 AINAASLSTQISGLPFSGPVAGVRIALIDGQWVAFPKYSDKERAVFEMVVAGRVAGDDVA 197

Query: 185 VLMVELEANQLSEDVVLDAI--------IFGHNECKPVIEAISKLA--------KMCAKE 228
           + M+E EA   +  ++ + +          G    KP + A+ +          K   + 
Sbjct: 198 IAMIEAEATDDAWKLIQEGVQAPTEAVVAEGIEAAKPFLRALCEAQSALAAQAAKDVQEF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+  D +      E +          +  I +K  R  ++D++K ++++   ++     E
Sbjct: 258 PLFPDYQ--PDAFEAVEAAASARAAEALAIADKQTREGRLDEIKAELLAELGAQFEG-RE 314

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +Q K++R  +L +++R+DGR    +R + A+V +L R HGS++F RG+TQ 
Sbjct: 315 KEVSAAFRSVQKKLMRHRVLTEQIRIDGRGPRDIRTLGAEVEVLPRVHGSAIFERGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +DSL    R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 375 MGVTTLNMLRMEQQIDSLGPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+  PVAGIAMGL+ 
Sbjct: 435 LVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAPVAGIAMGLIS 494

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  AL QA
Sbjct: 495 DEVDGETRYVALTDILGAEDALGDMDFKVAGTRDFVTAIQLDTKLDGIPASVLAGALTQA 554

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R+ IL+ +++ +     ++    PRV  + +P D+I  VIG  GK+I  I E+TGA 
Sbjct: 555 HEARVTILDVLNEAIDVP-DEMSPNAPRVISVKVPVDKIGEVIGPKGKMINQIQEETGAD 613

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGTV I ++     EAAR  I +I    VPEV + + G VVK   FGAF+     
Sbjct: 614 ISIEDDGTVYIGATDGPSAEAARAAINAIANPHVPEVGERFVGTVVKTTSFGAFISLSPG 673

Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 KDGLLHISQIRKLVGGKRVENVDDVLSVGQKVQVEIGEIDPRGKLSL 720


>gi|308176844|ref|YP_003916250.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
           arilaitensis Re117]
 gi|307744307|emb|CBT75279.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
           arilaitensis Re117]
          Length = 745

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/714 (38%), Positives = 415/714 (58%), Gaps = 42/714 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGRIA+Q+ G+ +    + T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  YGTRTIRFETGRIAKQAAGSAMVYIDDETALLSATTAGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE QV++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQVVVTVLSIEPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING----QYVLNPRLDEDQ-GSLDLFVSGT--- 181
           ++ A+S +  LSGLPF GP+ G +V  ++     Q+V  P+  E +    ++ V+G    
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALVDDGNGAQWVAFPKHSELKNAVFNMVVAGRIAG 197

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   + +++          + +  G    KP I+ + +          K
Sbjct: 198 DDVAIMMVEAEATDNAWELIKERGAQAPTEEVVAEGLEAAKPFIKVLCEAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+  D ++ +     +       L     I +K  R     + K ++V+  ++E 
Sbjct: 258 ETVEFPVFRDYEEDAY--TAVEAAASTRLAEIYTIADKQERDNAAGEFKDEIVAQLTAEG 315

Query: 284 SSWNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
           S++ E  GEI   F  +   +VR  +L ++VR+DGR    +R +SA+V +L R HGS++F
Sbjct: 316 SAFAERAGEISKAFGAVTKHIVRQRILTEQVRIDGRGLADIRQLSAEVEVLPRVHGSAIF 375

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            RG+TQ + V TL   + EQ +DSLS  +   +M +YNF P +TGE  R+G+P RREIGH
Sbjct: 376 ERGETQIMGVTTLNMLKMEQQIDSLSPVKSKRYMHNYNFPPYSTGETGRVGSPKRREIGH 435

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+   VAG
Sbjct: 436 GALAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAG 495

Query: 462 IAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           IAMGLV D  D    +  L+DI G ED +G MDFKVAGT   +TA+Q+D K+ GI  +++
Sbjct: 496 IAMGLVSDTVDGETRYAALTDILGAEDAMGDMDFKVAGTSEFVTAIQLDTKLDGIPASVL 555

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QA+  RLHILN +++ +     +L    PR+  + IP D+I  VIG  GK+I  I
Sbjct: 556 AAALTQAREARLHILNVLNQAIDAP-DELNVNAPRIISVKIPVDKIGEVIGPKGKMINQI 614

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGA 635
            E TGA ++I+DDGTV I +++    EAAR  I +I    VPEV + Y G VVK+  FGA
Sbjct: 615 QEDTGADISIEDDGTVLIGATNGESAEAARSAINAIANPQVPEVGERYLGTVVKLTTFGA 674

Query: 636 FVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           FV     +DGL+HIS+L      +RV    DVV  G  + V++   DDRGK+ L
Sbjct: 675 FVSLTPGKDGLLHISELRKINGGKRVEDVEDVVGVGQKLQVEITKIDDRGKLSL 728


>gi|332670053|ref|YP_004453061.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas fimi ATCC 484]
 gi|332339091|gb|AEE45674.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas fimi ATCC 484]
          Length = 742

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/707 (40%), Positives = 416/707 (58%), Gaps = 36/707 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+  A   GET++L+     +  KD  DFFPLT++ +ER YA
Sbjct: 18  FGTRTVRFETGRLAKQAAGSAAAYLDGETMLLSATTAGKHPKDQFDFFPLTIDVEERQYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL  R++DR +RPLF K  +NE QV+I V+    + +   +
Sbjct: 78  AGKIPGSFFRREGRPSTEAILACRLVDRPLRPLFVKGLRNEVQVVITVLAIHPDDAYDTL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AAS +  LSGLPF GPV G ++  ++GQ+V  PR  E +  + D+ V+G       A
Sbjct: 138 AINAASISTQLSGLPFSGPVGGVRIALVDGQWVAFPRYSERERATFDMVVAGRVVGDDVA 197

Query: 185 VLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE---- 228
           + M+E EA + S +++ +         +  G    KP I    EA  +LA   AKE    
Sbjct: 198 IAMIEAEAPEKSWNLIQEGATAPTEEVVAQGLEAAKPFIKVLVEAQQELAAKAAKETQVF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P   D +D       +       L  +  I +K  R  ++D++K ++V   + +     E
Sbjct: 258 PTFPDYQD--DAFAAVEAAATTSLGEALSIADKQTRENRLDEIKAEVVGQLAEQFEG-RE 314

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + +  +Q K++R  +L    R+DGR    +R +SA+V +L R HGS++F RG+TQ 
Sbjct: 315 KELSAAYRSVQKKLIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRVHGSAIFERGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 375 LGVTTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGLV 
Sbjct: 435 LMPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVS 494

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL QA
Sbjct: 495 DTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLGGALTQA 554

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K  RL IL+ +++ +     ++  F PRV  + +P D+I  VIG  GK+I  I E+TGA 
Sbjct: 555 KEARLAILDVIAEAIDVP-DEMSPFAPRVITVKVPVDKIGEVIGPKGKMINQIQEETGAD 613

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGTV I ++     EAAR  I +I    +PEV + + G VVK   FGAFV     
Sbjct: 614 ISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEVGERFVGTVVKTTTFGAFVSLSPG 673

Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 674 KDGLLHISQIRKLVGGKRVENVEDVLSVGQKVQVEIGEIDPRGKLSL 720


>gi|227495155|ref|ZP_03925471.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
           DSM 15436]
 gi|226831607|gb|EEH63990.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
           DSM 15436]
          Length = 782

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/708 (39%), Positives = 410/708 (57%), Gaps = 36/708 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETGR+ARQ+ G+ +A   + T +L+     +  KD  DFFPLTV+ +ER Y
Sbjct: 18  KFGKRVIRFETGRLARQAAGSAMAYLDDETAILSATTVGKHPKDQFDFFPLTVDVEERQY 77

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP    IL  R++DR +RP F K  +NE QV+  V+    + +  V
Sbjct: 78  AAGKIPGSFFRREGRPGTEAILACRLMDRPLRPAFVKGLRNEVQVVGTVLAIHPDDAYDV 137

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QD 183
           +++ AAS +  ++GLPF GP+ G ++  I+GQ+V  PR  E +  + ++ V+G       
Sbjct: 138 LAINAASMSTQIAGLPFSGPIGGTRLALIDGQWVAFPRYSEMERSTFNIVVAGRVVGDDV 197

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE                  +E+VV D +       + + EA  ++AK  +KE   
Sbjct: 198 AIMMVEAGGGDDMVDLMAAGGTVPTEEVVADGLEAAKPIIRQLCEAQLEVAKHASKETVE 257

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+  D  D       + + +  DL  +  I  K  R  +ID++++ M++    E     
Sbjct: 258 FPLYFDYTDEQY--AAVEKAVTADLSEAITIAAKLPREARIDEIQEAMLASLEEEFPEQ- 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E ++ + F  I+  ++R  +L   VR+DGR    +R +SA+V +L R HGS+LF RG+TQ
Sbjct: 315 EKDLKAAFRSIEKSLIRNRVLRDGVRIDGRKPTDIRSLSAEVEVLPRVHGSALFQRGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS      +M  YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 ILGVTTLNMLRMEQQLDNLSPVTAKRYMHQYNFPPFSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PV+P    FPY +R VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAMGL+
Sbjct: 435 ALVPVIPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLQAGVPLRAPVAGIAMGLM 494

Query: 468 KDGDDF----IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D     + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  AL Q
Sbjct: 495 TGEVDGVQKAVTLTDILGIEDGFGDMDFKVAGTREYITALQLDTKLDGIDSEVLAGALAQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  R  IL+ +++ +SE   ++ ++ PR+  + IP D+I  VIG  GK+I  I E TGA
Sbjct: 555 ARDARFAILDLINQAISEP-DEMSKYAPRIISVQIPVDKIGEVIGPKGKMINQIQEDTGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGTV I + +    EAAR M+ +I    +PEV + Y G VVK   FGAFV    
Sbjct: 614 ELTIEDDGTVYIGAETGEAAEAARAMVNAIANPQLPEVGERYVGTVVKTTSFGAFVSLTP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +R+    DV+  G  V V++ + D RGK+ L
Sbjct: 674 GKDGLLHISQVRRLVGGKRIESVEDVLGVGQQVEVEIAEIDARGKLSL 721


>gi|119960529|ref|YP_947337.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter aurescens
           TC1]
 gi|187470966|sp|A1R525|PNP_ARTAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119947388|gb|ABM06299.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase alpha chain [Arthrobacter
           aurescens TC1]
          Length = 750

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/720 (38%), Positives = 416/720 (57%), Gaps = 41/720 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GA +     +T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  FGKRVIRFETGRLAKQAAGASMVYIDEDTALLSATTAGKQPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R++DR +RP F K  +NE Q+++ V+  + +    VV
Sbjct: 78  AGRIPGSFFRREGRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPDELYDVV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQ----YVLNPRLDEDQ-GSLDLFVSGT--- 181
           ++ A+S +  LSGLPF GP+ G +V  I  +    +V  P+  + +    ++ V+G    
Sbjct: 138 AINASSMSTQLSGLPFSGPIGGVRVALIADEQGSQWVAFPKHSQLENAVFNMVVAGRIAG 197

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------K 223
              A++MVE EA   S +++          + +  G    KP I+A+ +          K
Sbjct: 198 DDVAIMMVEAEATDNSWNLIKEQGATAPTEEVVSEGLEAAKPFIKALCEAQADLAARAAK 257

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
              + P+ +D +D   +   +     + L     I +K  R    D+LK +++   + + 
Sbjct: 258 PTVEFPVFLDYQD--DVYAAVEAAAADKLAAVFQIADKQDRDNASDELKDEVLGALAGQF 315

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E E+ + F  +   VVR  +L  +VR+DGR    +R ++A+V +L R HGS++F R
Sbjct: 316 EG-REKELSAAFRSVTKHVVRQRILKDQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 374

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSLS   R  +M +YNF P +TGE  R+G+P RREIGHG 
Sbjct: 375 GETQIMGVTTLNMLKMEQQIDSLSPVTRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGA 434

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L++++AGVP+   VAGIA
Sbjct: 435 LAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIA 494

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 495 MGLVSDQVDGQTRYAALTDILGAEDAFGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAA 554

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL+QA+  RLHIL  ++  +     +L EF PRV  + IP D+I  VIG  GK+I  I E
Sbjct: 555 ALKQAREARLHILEVINAAIDTP-DELSEFAPRVIAVKIPVDKIGEVIGPKGKMINQIQE 613

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I +++    +AAR  I +I    VPE+ + Y G VVK   FGAFV
Sbjct: 614 DTGADISIEDDGTVYIGATNGPSADAARSAINAIANPQVPEIGERYLGTVVKTTTFGAFV 673

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                +DGL+HIS+L      +RV    DVV  G  V V++   DDRGK+ LS  V ++ 
Sbjct: 674 SLTPGKDGLLHISELRKLANGKRVDNVDDVVSVGQKVQVEITKIDDRGKLSLSPVVAEEE 733


>gi|319441544|ref|ZP_07990700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           variabile DSM 44702]
          Length = 762

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/724 (37%), Positives = 402/724 (55%), Gaps = 51/724 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L  ETG +ARQ+DG+V A   + T++L+T    +  ++  DFFPLTV+ +ER Y
Sbjct: 37  DFGTRTLTFETGLLARQADGSVTAYLDDDTMLLSTTTASKHPRENLDFFPLTVDVEERMY 96

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL  R+IDR +RP F+K  +NE QV++ V+  D E    V
Sbjct: 97  AAGRIPGSFFRREGRPGTEAILACRLIDRPLRPTFAKGLRNEVQVVVTVLSMDPEDMYDV 156

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT 181
           V++ AASA+  LSGLP  GPV G ++  +      +GQ+V  P  ++ +Q   +L V+G 
Sbjct: 157 VAINAASASTQLSGLPVSGPVGGVRMALVVDEAHADGQWVAFPTREQHEQAVFELVVAGR 216

Query: 182 -----------------QDAVLMVELEANQL------------SEDVVLDAIIFGHNECK 212
                               V+MVE  A +             +E +V + I        
Sbjct: 217 VSEVKKPRGRRKAVPGDDVVVMMVEAGATENVVERIAEGAPAPTEKIVAEGIEAARPFIA 276

Query: 213 PVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCF----IPEKYVRCKQI 268
            +  A + L     +     + + F    E++   ++ +   +      I +K  R   +
Sbjct: 277 ELCGAQAALVDAV-EASHAREFELFPAFGEDVYASVESESAEALRGIMAIADKQERDDAL 335

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328
                  V     +     E EI +   ++  ++VR  +L    R+DGRD+  +RD+   
Sbjct: 336 SANMDAAVDALGEQFEG-RESEIRNAHNEVSRQIVRERILTDGFRIDGRDTTAIRDLGVM 394

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           + L+ R HGS+LF RG+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE 
Sbjct: 395 IDLVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPVTSKRYIHHYNFPPYSTGET 454

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
            R+G+P RREIGHG LA RA+ PV+P    FPYT+R VSE   S+GS+SM +VC S+L++
Sbjct: 455 GRVGSPKRREIGHGALAERALLPVVPSREVFPYTIRQVSEALGSNGSTSMGSVCASTLSM 514

Query: 449 MDAGVPISKPVAGIAMGLVKDG----DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            +AGVP+  PVAGIAMGLV       D ++ L+DI G ED  G MDFKVAGT   ITA+Q
Sbjct: 515 YNAGVPLKAPVAGIAMGLVTGEVDGKDTYVTLTDILGAEDAFGDMDFKVAGTADFITALQ 574

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           +D K+ GI   ++  AL QA+  RL IL+ M++ +     ++ +F PR+  + IP ++I 
Sbjct: 575 LDTKVDGIPAKVLAEALSQARGARLEILSTMAEAIEGP-EEMSDFAPRITTVKIPQNKIG 633

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKI 622
            +IG  GK I  I E+TGA ++I+DDGTV +++++    EAA + + SI    +P+V   
Sbjct: 634 ELIGPKGKTINQITEETGANISIEDDGTVFVSAAAGKAAEAALDKVNSIANPQLPKVGDR 693

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + G VVK   FGAF+     RDGL+HIS L    RV K  D V  GD++ V++ D D+RG
Sbjct: 694 FLGTVVKTTAFGAFISLLPGRDGLLHISNLGGDRRVEKVEDEVSVGDSLEVEIADIDNRG 753

Query: 682 KIKL 685
           KI L
Sbjct: 754 KISL 757


>gi|172040539|ref|YP_001800253.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           urealyticum DSM 7109]
 gi|257096683|sp|B1VDC1|PNP_CORU7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171851843|emb|CAQ04819.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           urealyticum DSM 7109]
          Length = 765

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/720 (38%), Positives = 393/720 (54%), Gaps = 46/720 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+DGAV A    +T++L+T    RS ++G DFFPLTV+ +ER Y
Sbjct: 42  DFGSRTLRFETGLLARQADGAVTAYLDEDTILLSTTTASRSPREGIDFFPLTVDVEERMY 101

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G+IPG + RRE RP  + IL +R+IDR +RP F K  +NE QV+I VM  D      V
Sbjct: 102 SAGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVKGLRNEVQVVITVMSIDPNEMYDV 161

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSGT 181
           +++  ASA+  LSGLP    V G ++  +       GQ+V  P  ++  Q   +L V+G 
Sbjct: 162 LAINGASASTQLSGLPVSSSVGGVRMALVVDEEHPEGQWVAFPTREQVSQSVFELVVAGR 221

Query: 182 ---------------QDAVLMVELEAN------------QLSEDVVLDAIIFGHNECKPV 214
                            AV+MVE  A               +E VV + I         +
Sbjct: 222 VTEPAKGGRGKKSQPNVAVMMVEAGATDNVVERIAEGAPAPTEAVVAEGIEAAKPFIATL 281

Query: 215 IEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
             A   L      E    +        +   +      D+     I +K  R + + +  
Sbjct: 282 CAAQDALRDAVDTESREFELFPPFDEDVYSAVEAECDADVAQIMTIADKQERDESLAENM 341

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
           ++ V     +     E EI +   D+   +VR  +L+   R+DGRD  ++RD+   V LL
Sbjct: 342 QETVDALIEQFPE-RESEIRAAHNDLTRTIVRQRILEDGFRIDGRDHTSIRDLGIVVQLL 400

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG 392
            R HGS+LF RG+TQ + V TL T + EQ +DSL       ++ HYNF P +TGE  R+G
Sbjct: 401 PRAHGSALFERGETQILGVTTLDTLKMEQTIDSLGPETSKRYIHHYNFPPYSTGETGRVG 460

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           +P RREIGHG LA RA+ PVLP   +FPYT+R VSE   S+GS+SM +VC S+L+L +AG
Sbjct: 461 SPKRREIGHGALAERALTPVLPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYNAG 520

Query: 453 VPISKPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           VP+  PVAGIAMGLV       + F+ L+DI G ED  G MDFKVAGT   +TA+Q+D K
Sbjct: 521 VPLKAPVAGIAMGLVSGLVDGKEKFVSLTDILGAEDAFGDMDFKVAGTSEYVTALQLDTK 580

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           + G+   ++  AL QA+  RL IL  M   +     Q+ E  PR+  ++IP ++I  VIG
Sbjct: 581 LDGLPSEVLASALGQARSARLEILQLMEDAIDAP-DQMSELAPRITKISIPQNKIGEVIG 639

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQ 626
             GK I  I E+TGA ++I+DDGTV +++      EAA E I +I     P+V   + G 
Sbjct: 640 PKGKTINQITEETGANISIEDDGTVFVSAVGGEAAEAAIEKINAIANPQQPKVGDRFLGT 699

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           VVK   FGAF+     RDGL+HIS +    R+ K  D +  GD + V++ D D+RGKI L
Sbjct: 700 VVKTTAFGAFISLLPGRDGLLHISNIGGDRRIEKVEDELNVGDKIQVEIADIDNRGKISL 759


>gi|62859375|ref|NP_001017033.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
 gi|89267966|emb|CAJ81388.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 789

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/711 (35%), Positives = 392/711 (55%), Gaps = 29/711 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G++ V+ T V        Q F PL V+Y+E+
Sbjct: 53  VTVDLGARKLEISSGKLARFADGCAVVKLGDSSVMVTAVSRTKPSPSQ-FMPLVVDYREK 111

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           + A G+IP  +LRRE   T +EIL SR+IDRS+RPLF   Y  ETQ++ N++  D  + P
Sbjct: 112 SAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKP 171

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS-GTQDA 184
            V+++  ASAAL LS +P+ GPV   +V  ++G++++NP   E   S L+L ++ G Q  
Sbjct: 172 DVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLVIAGGVQSQ 231

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     A+  G    + +I+ I +LAK   KE   I    +    + E
Sbjct: 232 IVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAKEHGKEKRTIQKIFQAPVDIVE 291

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              Q   E +    S F  +K  R + I+ ++ +               EI+  F  +  
Sbjct: 292 SARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETLRERFPDAEPFEIMEAFSAVSK 351

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            V R ++L++  R DGRD  ++R+I+ +V L +  HGS+LF RG TQ +  VT  + E  
Sbjct: 352 DVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESS 411

Query: 361 QYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              D     LSG +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 412 MKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALRPVIP-- 469

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------- 468
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GL+         
Sbjct: 470 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDKNG 529

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +  D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+KI G+   I++ A+QQA   +
Sbjct: 530 EIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQADIKIPGLPLKIVMEAIQQATVAK 589

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             I+  M+KV+S+ R    E +P  E + +P  +    +G GG  ++ I  +TG  V+  
Sbjct: 590 KEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRFVGPGGYNLKKIQAETGVTVSQI 649

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGA 642
           D+ T  + + + + +  ARE I  I         E   +Y   + ++ D G  V      
Sbjct: 650 DEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPNM 709

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              L+H SQL   ++   S + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 710 TPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDPTDGRMRLSRKVLQ 760


>gi|326333597|ref|ZP_08199836.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948613|gb|EGD40714.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
           bacterium Broad-1]
          Length = 753

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/716 (39%), Positives = 421/716 (58%), Gaps = 44/716 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R +K ETG +ARQ+ G+V A   + T++L+     +  KD  DFFPLT++ +ER Y
Sbjct: 17  KFGTRTVKFETGLLARQAAGSVTAYLDDETMLLSATTVSKQPKDHFDFFPLTIDVEERMY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + R E RP E+ IL  R+IDR +RP F K  +NE QV+I VM  D +    V
Sbjct: 77  AAGKIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALDPDQPYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----Q 182
           +++ AAS +  LSGLPF GPV G +V  I GQ+V  P   + +    D+ V+G       
Sbjct: 137 LAINAASMSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLENAVFDMVVAGRVTETGD 196

Query: 183 DAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVI----EAISKLAKMCAKE-- 228
            A++MVE E+ + + D+V           +  G +  KP I    EA ++LAK  AK   
Sbjct: 197 VAIMMVEAESTEQTWDLVQSGAQAPTEPIVAGGLDAAKPFIKQLVEAQAELAKQSAKPVQ 256

Query: 229 --PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPE-------KYVRCKQIDDLKKKMVSYF 279
             PI +D +D   + E +   +  D+     +         K  R ++ D +K  ++   
Sbjct: 257 EYPIFLDYQD--DVYEAVEATVGADVTDLYSVKGSRERVLTKLEREEEGDRIKLALLEKI 314

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++     EGEI + ++ +  K +RT +L  KVR+DGR    +R + ++VG++ R HGS+
Sbjct: 315 GAQFEG-REGEIGAAYKALTKKAIRTQVLRDKVRIDGRGLADIRPLHSEVGVIPRVHGSA 373

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           LF RG+TQ + V TL   + EQ +D+LS  +   +M  Y F P +TGE  R+G+P RRE+
Sbjct: 374 LFERGETQILGVTTLDMLKMEQQLDTLSPEKHRRYMHKYIFPPFSTGETGRVGSPKRREV 433

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LARRA+ PVLP   +FPY +R +SE   S+GS+SM +VC S+++L++AGVP+  PV
Sbjct: 434 GHGALARRALLPVLPSREEFPYAIRQLSEAMGSNGSTSMGSVCASTMSLLNAGVPLKAPV 493

Query: 460 AGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGL+    D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI   
Sbjct: 494 AGIAMGLISGEIDGETKYVALTDILGAEDAFGDMDFKVAGTSEFVTALQLDTKLDGIPAE 553

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL QAK  R  IL+ M + +     ++    PR+  + +P D+I  VIG  GKVI 
Sbjct: 554 VLAQALNQAKDARTTILDVMHEAIGG-VEEMAPTAPRIITVKVPVDKIGEVIGPKGKVIN 612

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I E TGA+++I+DDGTV I ++  A  EAAR  + +I +  +PEV + Y G VVK  +F
Sbjct: 613 QIQEDTGAQISIEDDGTVLIGATDGAAAEAARAAVNAIANPTMPEVGERYLGTVVKTTNF 672

Query: 634 GAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     +DGL+HI++L      +RV    DVV+ G  + V++ + DDRGK+ L
Sbjct: 673 GAFVALLPGKDGLLHITKLRALNGGKRVESVEDVVEVGQKIQVEIAEIDDRGKLSL 728


>gi|184201241|ref|YP_001855448.1| polynucleotide phosphorylase/polyadenylase [Kocuria rhizophila
           DC2201]
 gi|226702657|sp|B2GKI3|PNP_KOCRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183581471|dbj|BAG29942.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Kocuria rhizophila DC2201]
          Length = 751

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/718 (39%), Positives = 411/718 (57%), Gaps = 44/718 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +    E T +L+     +  ++G DFFPLTV+ +ER YA
Sbjct: 18  YGKRVVRFETGRLARQAAGSAMVYIDEETSMLSATAVGKHPREGFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F K  +NE QV++ VM    +   + V
Sbjct: 78  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFGKGLRNEVQVVVTVMSIAPDEIYNTV 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI---NG--QYVLNPRLDEDQ-GSLDLFVSG--- 180
           ++ AAS +  LSG+PF+GPV G ++  +   NG  Q++  P+  + +    D+ V+G   
Sbjct: 138 AINAASMSTTLSGMPFQGPVGGVRMALMAEENGGHQWIAFPKHSQLENAVFDMAVAGRVV 197

Query: 181 -TQD-----AVLMVELEAN-------------QLSEDVVLDAIIFGHNECKPVIEAISKL 221
            T+D     A++MVE EA                SE++V + +       K + +A + L
Sbjct: 198 TTKDGGQDVAIMMVEAEATDNAWELIKGQGAVAPSEELVAEGLEASKPFIKALCDAQADL 257

Query: 222 AKMCAKEPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           A    K  + +           + + Q + E +     I  K  R    D+L    ++  
Sbjct: 258 AARNRKPELDLPRFGGFGDDAAQAVEQFVGERMAQVYSIAGKQEREAATDELHHDTLAEL 317

Query: 280 SSEHSSWN--EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
           + E   +     E+   ++ +  + VR  +L  KVR+DGR    +R +SA+V +L R HG
Sbjct: 318 TGEGKPFEGRADEVNGAYQALTKQTVRQRILKDKVRIDGRGLTDIRQLSAEVDVLPRVHG 377

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQ + V TL   + EQ +DSLS  +   ++ HYNF P +TGE  R+G+P RR
Sbjct: 378 SALFERGETQIMGVTTLNMLKMEQQIDSLSPVKHKRYIHHYNFPPYSTGETGRVGSPKRR 437

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL +AGVP+  
Sbjct: 438 EIGHGALAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLALYNAGVPLRA 497

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 498 PVAGIAMGLVSDTVDGEVQYAALTDILGAEDALGDMDFKVAGTREFVTAIQLDTKLDGIP 557

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  AL QA+  RL+IL+ ++  +     ++ EF PRV  + +P  +I  VIG  GK+
Sbjct: 558 ASVLASALTQAREARLYILDVLTSAIDAP-DEMSEFAPRVISVTVPVSKIGEVIGPKGKM 616

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVM 631
           I  I E TG  ++I+DDGTV I ++     EAAR  I +I    VPEV + Y G VVK  
Sbjct: 617 INQIQEDTGTDISIEDDGTVYIGATDGPSAEAARSAINAIANPQVPEVGERYLGTVVKTT 676

Query: 632 DFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     +DGL+HIS++      +RV +  DV+  G  V V++   DDRGK+ L
Sbjct: 677 TFGAFVSLTPGKDGLLHISEMRQLNDDKRVNEVDDVLSVGQKVQVEITKVDDRGKLSL 734


>gi|116063353|gb|AAI23081.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 789

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/711 (35%), Positives = 393/711 (55%), Gaps = 29/711 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G++ V+ T V        Q F PL V+Y+E+
Sbjct: 53  VTVDLGARKLEISSGKLARFADGCAVLKLGDSSVMVTAVSRTKPSPSQ-FMPLVVDYREK 111

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           + A G+IP  +LRRE   T +EIL SR+IDRS+RPLF   Y  ETQ++ N++  D  + P
Sbjct: 112 SAAAGRIPTNHLRREVGITPDEILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKP 171

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS-GTQDA 184
            V+++  ASAAL LS +P+ GPV   +V  ++G++++NP   E   S L+L ++ G Q  
Sbjct: 172 DVLAINGASAALALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLVIAGGVQSQ 231

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     A+  G    + +I+ I +LAK   KE   I    +    + E
Sbjct: 232 IVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAKEHGKEKRTIQKIFQAPVDIVE 291

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              Q   E +    S F  +K  R + I+ ++ +               EI+  F  +  
Sbjct: 292 SARQYASEKIYAVFSDFTHDKISRDEAINKIRLETEETLRERFPDAEPFEIMEAFSAVSK 351

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +V R ++L++  R DGRD  ++R+I+ +V L +  HGS+LF RG TQ +  VT  + E  
Sbjct: 352 EVFRNIILNEYRRCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESS 411

Query: 361 QYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              D     LSG +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 412 MKSDHITTALSGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALRPVIP-- 469

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------- 468
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GL+         
Sbjct: 470 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDKNG 529

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +  D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+KI G+   I++ A+QQA   +
Sbjct: 530 EIQDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQADIKIPGLPLKIVMEAIQQATVAK 589

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             I+  M+KV+S+ R    E +P  E + +P  +    +G GG  ++ I  +TG  V+  
Sbjct: 590 KEIIQIMNKVISKPRPSKKENSPVTETVQVPLSKRMRFVGPGGYNLKKIQAETGVTVSQI 649

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGA 642
           D+ T  + + + + +  ARE I  I         E   +Y   + ++ D G  V      
Sbjct: 650 DEETFSVFAPTPSAMHEAREFINEICKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPNM 709

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              L+H SQL   ++   S + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 710 TPVLLHNSQLDHRKIRHPSALGLEIGQQIQVKYFGRDPTDGRMRLSRKVLQ 760


>gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa
           Japonica Group]
          Length = 982

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/707 (37%), Positives = 419/707 (59%), Gaps = 27/707 (3%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E  GR +  ETG++AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+
Sbjct: 59  ESFREEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVD 118

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI------IN 116
           YQE+ YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E QV+      +N
Sbjct: 119 YQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQVMNATIIMVN 178

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175
           V+  D +  P V++  A+SAALMLS +P+ GP+   +V  I+G +VLNP +DE     L+
Sbjct: 179 VISSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLN 238

Query: 176 LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV---- 231
           L  + ++D  LM++++A +++E  +   +   H E    I    +LAK   K+       
Sbjct: 239 LVYACSRDKTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKIS 298

Query: 232 -IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
            I  K + K+       I+E    S +   K+ R + ++++ + + +    E    +   
Sbjct: 299 LISDKSYEKIRTLSEAPIEEVFTDSTY--GKFERGEALENITQSVKAKLEEECDEDSLKF 356

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           +    + ++ +V+R  +++K +R+DGR  + VR +  +       HGS+LF RGDTQ + 
Sbjct: 357 LHKAVDTVRKQVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLC 416

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
            VTLG   D Q +DS+ G     FM+HY+F P +  EV++ G  +RRE+GHG LA +A+ 
Sbjct: 417 TVTLGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALL 476

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            VLP   +FPYT+R+ SE+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV + 
Sbjct: 477 AVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEV 536

Query: 471 DD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           D        + IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ 
Sbjct: 537 DQTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEP 596

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A++ R  IL+ M + +S +R      +PR+  ++   D +R ++       + I ++TGA
Sbjct: 597 ARKARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLL----FHRKKIEQETGA 652

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +V++ D GTV I + +   ++ A E +  +     EV + YKG V  + ++GAFV F G 
Sbjct: 653 RVSVSD-GTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGG 711

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + GL+HIS+LS ++V+K SDVV  G  + +  +  D RG IKLS+K 
Sbjct: 712 QQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKA 758


>gi|332667455|ref|YP_004450243.1| polyribonucleotide nucleotidyltransferase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336269|gb|AEE53370.1| Polyribonucleotide nucleotidyltransferase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 777

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/706 (40%), Positives = 428/706 (60%), Gaps = 19/706 (2%)

Query: 4   VHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
             T       GR + +ETG++A Q+DG+V+   G T++ A    D+  + GQDFFPL+V+
Sbjct: 6   PITKSFNLPDGREVIIETGKLATQADGSVVVRCGNTMIFAVATSDKEARAGQDFFPLSVD 65

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+  + G+IPG + RRE++ ++ EIL SR++DR+IRPLF   Y N+TQ++IN++  + 
Sbjct: 66  YQEKFASSGRIPGNFFRRETKLSDYEILCSRLVDRAIRPLFPNHYMNDTQIMINLISVEK 125

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
              P     +AASAAL +S +PF+GP+   +V  ING++V+NP  +  +   +DL V+ T
Sbjct: 126 NEMPDAFVALAASAALSVSDIPFQGPISEVRVARINGEFVINPGKEALKTADIDLIVAAT 185

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI----VIDSKDF 237
              + MVE EA ++ E+ ++DA+   H   K    A   LA++   + +    V    + 
Sbjct: 186 LQDITMVEGEAKEMDEESMIDALRIAHEAIKVQCHAQIALAQLVGDKALIKREVPPLPED 245

Query: 238 SKLEEEMSQMIKEDLRV-SCFIPEKYVR----CKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             + E++ +++ + +R  +    EK  R     +   + + +M   +  E     +    
Sbjct: 246 EGVLEKLKELVVDKIRAVASSASEKNARKKKFEEVKKEAEVEMALAYGEEAWPEKKPFFK 305

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             F+ ++ K +R V+LD  +R+DGR    +R I ++V  L  THGS++F RG+TQA+  +
Sbjct: 306 RYFDVLKKKTIREVILD-GIRLDGRGPSEIRHIWSEVDYLPSTHGSAIFTRGETQALTSL 364

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DEQ +D+        F++HYNF   + GEV     P RRE+GH  LA R++  V
Sbjct: 365 TLGTKTDEQMIDNSQEMYHEKFILHYNFPGYSVGEVKPSRGPGRREVGHANLAARSLRKV 424

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +P  A  PYT+RIVS+I ES+GSSSMATVC  +LALMDAG+ I  PV+GIAMG++K+GD 
Sbjct: 425 MP--ADLPYTVRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGMIKEGDR 482

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             ILSDI GDED LG MDFKV GT++GIT  QMD+KI G+  +++V AL QA+ GRLHIL
Sbjct: 483 VAILSDILGDEDALGDMDFKVTGTENGITGCQMDIKIDGLPYDLLVRALSQAREGRLHIL 542

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---D 589
           NEM K +   R       PR+  + I    I  VIG GGKVI+ I   TG ++NI+   D
Sbjct: 543 NEMKKTIEVPREDYKPHAPRIVEIIIDKSFIGAVIGPGGKVIQEIQASTGTQINIEEKGD 602

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G V IASS+   I++A E +  IT  P V  +++G V  VM +G FV F   + GL+H+
Sbjct: 603 KGHVTIASSNKDAIDSAIEWVNRITFNPTVGDVFRGVVKSVMPYGVFVDF-NGKSGLLHV 661

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           S++S  R+    DV+KEGD + V+L++ D + GK++LS K +    
Sbjct: 662 SEISHTRIDNVEDVLKEGDEIKVQLVEVDKKTGKMRLSRKSLLPRP 707


>gi|300933063|ref|ZP_07148319.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           resistens DSM 45100]
          Length = 787

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/723 (38%), Positives = 404/723 (55%), Gaps = 49/723 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ E+G +ARQ+DGAV A    +T++L+T    R+ ++G DFFPLTV+ +ER Y
Sbjct: 61  DFGKRTVRFESGLLARQADGAVTAYLDEDTMLLSTTTASRNPREGIDFFPLTVDVEERMY 120

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QVI+ V+  D +    V
Sbjct: 121 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPTFVKGLRNEVQVIVTVLSMDPQEMYDV 180

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGS-LDLFVSG- 180
           +++ AASA+  LSGLP    V G ++  +       GQ+V  P  ++   S  +L V+G 
Sbjct: 181 LAINAASASTQLSGLPVSSAVGGVRMALVVDEDHPEGQWVAFPTREQLSASVFELVVAGR 240

Query: 181 -----------------TQDAVLMVELEANQ------------LSEDVVLDAIIFGHNEC 211
                            T  AV+MVE  A               +E VV + I       
Sbjct: 241 VTEPVKGARGRRTKGGDTNVAVMMVEAGATADAVERIAQGAPAPTEAVVAEGIEAAKPFI 300

Query: 212 KPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQID 269
             + EA   L++    E    +        +   +     E L     I +K  R   + 
Sbjct: 301 ATLCEAQDALSRAIETEAREFELFPPFGEDVYTSVEAETVEALGEIMSIADKQERDDALA 360

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
           +  +  V     E     EGEI +   D+  ++VR  +L++  R+DGRD+ T+RD+   V
Sbjct: 361 ENMQATVDELLEEFPE-REGEIRAAHNDVTKQLVRQRILEEGFRIDGRDATTIRDLGIVV 419

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
            L+ R HGS+LF RG+TQ + V TL T + EQ +DSL       ++ HYNF P +TGE  
Sbjct: 420 QLVPRAHGSALFERGETQILGVTTLDTLKMEQQIDSLGTETSKRYIHHYNFPPFSTGETG 479

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+G+P RREIGHG LA RA+ PV+P   +FPYT+R VSE   S+GS+SM +VC S+L+L 
Sbjct: 480 RVGSPKRREIGHGALAERALVPVIPSRDEFPYTIRQVSEAMGSNGSTSMGSVCASTLSLY 539

Query: 450 DAGVPISKPVAGIAMGLVK----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AGVP+  PVAGIAMGLV     + D ++ L+DI G ED  G MDFKVAGT+  +TA+Q+
Sbjct: 540 NAGVPLKAPVAGIAMGLVTGKVGNKDKYVTLTDILGAEDAFGDMDFKVAGTEDFVTALQL 599

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D K+ GI  +++  AL QA+  RL IL  M   +      + EF PR+  ++IP ++I  
Sbjct: 600 DTKLDGIPSDVLAEALGQARTARLEILQLMEDAIDAP-DDMSEFAPRITTISIPANKIGE 658

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIY 623
           VIG  GK I  I E+TGA ++I++DGTV I+++      AA E I +I    +P++   +
Sbjct: 659 VIGPKGKTINQITEETGADISIEEDGTVFISATGGQAAAAAEEKINAIANPQLPKIGDRF 718

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G VVK   FGAFV     RDGL+HIS L    R+ +  D V  GD + V++ D D+RGK
Sbjct: 719 LGTVVKTTAFGAFVSLVPGRDGLIHISNLGGDRRIERVEDEVSVGDKIEVEIADIDNRGK 778

Query: 683 IKL 685
           I L
Sbjct: 779 ISL 781


>gi|91216373|ref|ZP_01253340.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
           torquis ATCC 700755]
 gi|91185511|gb|EAS71887.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
           torquis ATCC 700755]
          Length = 683

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/675 (40%), Positives = 408/675 (60%), Gaps = 15/675 (2%)

Query: 35  YGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRM 94
            G+T++L TVV         DFFPLTV+Y+E+  A G+ PGG+ +RE+RP++ E+L  R+
Sbjct: 1   MGDTMLLCTVVSSYKES-KMDFFPLTVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRI 59

Query: 95  IDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV 154
           +DR +RPLF   Y+ ETQV+I +M HD +  P  ++ +AASAA+ LS +PFE  +  A+V
Sbjct: 60  VDRVLRPLFPSDYRTETQVMIQLMSHDEDVMPDALAGLAASAAIQLSDIPFETAISEARV 119

Query: 155 DYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKP 213
             ING++V+NP   +  +  +D+ +  + D+V+MVE E  ++SE+ + +AI F H   K 
Sbjct: 120 ARINGEFVINPSRSQLKESDIDMIIGASMDSVMMVEGEMKEISEEEMAEAIQFAHEHIKK 179

Query: 214 VIEAISKLAKMCAKEPI--VIDSKDFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDD 270
            +EA  +LA+   K+P+     ++D    E+++  +  + +   +     K  R +    
Sbjct: 180 QVEAQLRLAEAFGKKPVREYAVTEDNEDFEKKIHDLAYDKIYEIAKGGHSKKDRGEAFSA 239

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           +K + ++ FS E    NE  I   +   +   VR + L + +R+DGR ++ +R I  +V 
Sbjct: 240 VKDEAMALFSEEELEGNEKLIKKYYNKTEKAAVRELTLAEGLRLDGRKTDEIRPIWCEVA 299

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
            L   HGS++F RG+TQA+  VTLGT  +   +D  +      F +HYNF P  TGE   
Sbjct: 300 YLPSVHGSAIFTRGETQALATVTLGTSREASTIDMPTHQGEEKFYLHYNFPPFCTGEAYP 359

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +   SRREIGHG LA+RA+  ++P     PYT+RIVSE+ ES+GSSSMATVC  ++A+MD
Sbjct: 360 IRGTSRREIGHGNLAQRALKGMIP--ESNPYTVRIVSEVLESNGSSSMATVCAGTMAMMD 417

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           AG+ + KPV+GIAMGL+ DGD   +LSDI GDEDHLG MDFKV GT  GITA QMD+K+ 
Sbjct: 418 AGIKMKKPVSGIAMGLISDGDRHAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKVK 477

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           G+   I+V ALQQA+ GRLHIL +++  +S     +    P++    IP + I  +IG G
Sbjct: 478 GLPYEILVKALQQARAGRLHILEKLTDTISLPNENVKAHAPKIITRRIPNEFIGALIGPG 537

Query: 571 GKVIRGIVEQTGAKVNIDDD-----GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           GKVI+ + + TG ++ I++D     G V+I  +    I+     I S+T  PE   +Y+ 
Sbjct: 538 GKVIQELQKSTGTEIVINEDPVTEEGIVEILGTKQEGIDKVLAKIDSVTFKPEKGSVYEV 597

Query: 626 QVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GK 682
            VVKV+DFGA V +      + L+HIS+L+ ER    +DV+K GD + VK    D R  K
Sbjct: 598 TVVKVLDFGAVVEYNDAPGNEVLLHISELAWERTENVADVMKLGDVLDVKYFGVDPRTKK 657

Query: 683 IKLSMKVVDQNTGKP 697
            K+S K + +   +P
Sbjct: 658 PKVSRKALLKKPERP 672



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 86/191 (45%), Gaps = 15/191 (7%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP--- 84
            G+ + T GET  LATV    + ++       T   +E+ Y     P  +   E+ P   
Sbjct: 305 HGSAIFTRGETQALATVTLG-TSREASTIDMPTHQGEEKFYLHYNFPP-FCTGEAYPIRG 362

Query: 85  -TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
            +  EI    +  R+++ +  +      +++  V++ +  SS  + ++ A + A+M +G+
Sbjct: 363 TSRREIGHGNLAQRALKGMIPESNPYTVRIVSEVLESNGSSS--MATVCAGTMAMMDAGI 420

Query: 144 PFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELE--ANQLS 196
             + PV G  +  I   +   VL+  L ++   G +D  V+GT D +   +++     L 
Sbjct: 421 KMKKPVSGIAMGLISDGDRHAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLP 480

Query: 197 EDVVLDAIIFG 207
            ++++ A+   
Sbjct: 481 YEILVKALQQA 491


>gi|284030886|ref|YP_003380817.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kribbella flavida DSM 17836]
 gi|283810179|gb|ADB32018.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kribbella flavida DSM 17836]
          Length = 750

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/708 (40%), Positives = 410/708 (57%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+  A   G+T+VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 24  FGTRTIRFETGRLAQQAAGSAAAYLDGDTMVLSATTASKKPKDQFDFFPLTVDVEERMYA 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+E  IL  R+IDR +RP F    +NE QV+I V+  + +    V+
Sbjct: 84  AGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVSGLRNEIQVVITVLALNPDKLYDVL 143

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GP+   +V  I+ Q+V  P   E +    D+ V+G        
Sbjct: 144 AINAASMSTQIAGLPFSGPIGATRVALIDKQWVAFPTHSELEDAVFDMVVAGRVTDSGDV 203

Query: 184 AVLMVELEAN------------QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE E+               +E++V + +       K ++EA S LA   +K    
Sbjct: 204 AIMMVEAESTPGTFDAVAAGKQAPTEEIVAEGLEAAKGFIKTLVEAQSALAAKASKPTGE 263

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            PI  D  D +     +     E+L  +  I  K  R +  + +K  +V   +++     
Sbjct: 264 FPIFPDYADDAF--AAVQAAATEELTQALTITGKQEREEATEAVKAAVVDKLAADFEG-R 320

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ + F  +  K+VR  +L  KVRMDGR    +R + AQV +L R HGS+LF RG+TQ
Sbjct: 321 EKELSAAFRSLTKKLVRQRVLRDKVRMDGRGLADIRPLKAQVKVLPRVHGSALFERGETQ 380

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 381 ILGVTTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 440

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP    FPY LR VSE   S+GS+SM +VC S+L+L+ AGVP+  PVAGIAMGL+
Sbjct: 441 ALVPVLPSREDFPYALRQVSEALGSNGSTSMGSVCASTLSLLSAGVPLKAPVAGIAMGLI 500

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
               D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 501 SGEVDGKTEYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPASVLAGALTQ 560

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK  RL IL+ M+K +     ++ EF PRV  + +P D+I  VIG  GK+I  I E TGA
Sbjct: 561 AKEARLTILDVMAKAIDAP-GEMSEFAPRVISVKVPVDKIGEVIGPKGKMINQITEDTGA 619

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I ++     EAAR  I +I    +PE  + Y G VVK  +FGAF+    
Sbjct: 620 DISIEDDGTVYIGATDGPSAEAARAAINAIANPTMPEKGERYLGTVVKTTNFGAFISLLP 679

Query: 642 ARDGLVHISQLS----TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HIS+L      +RV    D++  G  + V++ + DDRGK+ L
Sbjct: 680 GKDGLLHISKLRGLAGGKRVEAVEDILSVGQKLQVEIAEIDDRGKLSL 727


>gi|229490937|ref|ZP_04384772.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
           SK121]
 gi|229322327|gb|EEN88113.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
           SK121]
          Length = 756

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/715 (39%), Positives = 407/715 (56%), Gaps = 44/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQ-GSLDLFVSGT- 181
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +D+ +    D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIVSDENKTGQWVAFPTVDQLENAVFDMVVAGRV 204

Query: 182 --------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLA--- 222
                     A++MVE EA       + D         +  G    KP I  +       
Sbjct: 205 VSGSGDNADVAIMMVEAEATDNVIAKIADGAQAPTEAIVAEGLEAAKPFIARLCAAQAAL 264

Query: 223 -----KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
                K     P+    +D   +   +     E L  +  I  K  R  + D++K +++ 
Sbjct: 265 ASKAAKPTGDYPVFPAYQD--DVFAAVEAAASEKLNAALTIAGKQERDDKTDEVKVEVLE 322

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
             +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HG
Sbjct: 323 QVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGVTDIRSLSAEVAIIPRAHG 381

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RR
Sbjct: 382 SALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPKRR 441

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  
Sbjct: 442 EIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPLRA 501

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 502 PVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIP 561

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  AL QAK  R  IL  M++ +     ++  F PRV  + +P D+I  VIG  GK+
Sbjct: 562 SQVLAGALSQAKDARTTILEVMAEAIDTP-DEMSPFAPRVTAIKVPVDKIGEVIGPKGKM 620

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVM 631
           I  I EQTGA ++I+DDGTV + ++     +AA +MI +I    +P+V + + G VVK  
Sbjct: 621 INSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVKTT 680

Query: 632 DFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D RGKI L
Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGSKIRVEIADIDARGKISL 735


>gi|325067095|ref|ZP_08125768.1| polynucleotide phosphorylase/polyadenylase [Actinomyces oris K20]
          Length = 770

 Score =  641 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/709 (38%), Positives = 400/709 (56%), Gaps = 36/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  ++ + +  + V+G        
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE  A +             +E VV + +       K + EA  ++A+  +K    
Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SW 286
            P+ +D  D  + +          L  +     K  R    D ++ ++++  +       
Sbjct: 260 FPLYLDYTD-EQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVRDEVLAELAESFPTEE 318

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +   + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++F RG+T
Sbjct: 319 DTKALKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGET 378

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIGHG LA 
Sbjct: 379 QILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIGHGNLAE 438

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL
Sbjct: 439 RALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 498

Query: 467 VKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           + +       +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   ++  AL 
Sbjct: 499 MHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEVLAGALG 558

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RL IL+ +++ +     ++    PRV  + IP D+I  VIG  GK+I  I E TG
Sbjct: 559 QARDARLFILDVLAQAIDAP-DEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQIQEDTG 617

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + ++DDGTV I +S     EAAR+ + +I    +PE+ + + G VVK   FGAFV   
Sbjct: 618 ADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFGAFVSLT 677

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L
Sbjct: 678 PGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSL 726


>gi|226306131|ref|YP_002766091.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus erythropolis PR4]
 gi|257096704|sp|C0ZYB7|PNP_RHOE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226185248|dbj|BAH33352.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus erythropolis PR4]
          Length = 756

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/715 (39%), Positives = 407/715 (56%), Gaps = 44/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQ-GSLDLFVSGT- 181
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +D+ +    D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALIVSEDNKAGQWVAFPTVDQLENAVFDMVVAGRV 204

Query: 182 --------QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLA--- 222
                     A++MVE EA       + D         +  G    KP I  +       
Sbjct: 205 VSGSGDNADVAIMMVEAEATDNVIAKIADGAQAPTEAIVAEGLEAAKPFIARLCAAQAAL 264

Query: 223 -----KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
                K     P+    +D   +   +     E L  +  I  K  R  + D++K +++ 
Sbjct: 265 ASKAAKPTGDYPVFPAYQD--DVFAAVEAAASEKLNAALTIAGKQERDDKTDEVKVEVLE 322

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
             +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HG
Sbjct: 323 QVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGVTDIRSLSAEVAIIPRAHG 381

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RR
Sbjct: 382 SALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPKRR 441

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  
Sbjct: 442 EIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPLRA 501

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 502 PVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIP 561

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  AL QAK  R  IL  M++ +     ++  F PRV  + +P D+I  VIG  GK+
Sbjct: 562 SQVLAGALSQAKDARTTILEVMAEAIDTP-DEMSPFAPRVTAIKVPVDKIGEVIGPKGKM 620

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVM 631
           I  I EQTGA ++I+DDGTV + ++     +AA +MI +I    +P+V + + G VVK  
Sbjct: 621 INSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVKTT 680

Query: 632 DFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D RGKI L
Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVNVGSKIRVEIADIDARGKISL 735


>gi|320533267|ref|ZP_08033971.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134517|gb|EFW26761.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 785

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/709 (38%), Positives = 400/709 (56%), Gaps = 36/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  ++ + +  + V+G        
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE  A +             +E VV + +       K + EA  ++A+  +K    
Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SW 286
            P+ +D  D  + +          L  +     K  R    D ++ ++++  +       
Sbjct: 260 FPLYLDYSD-EQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVRDEVLAELAESFPTEE 318

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +   + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++F RG+T
Sbjct: 319 DTKALKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGET 378

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIGHG LA 
Sbjct: 379 QILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIGHGNLAE 438

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RAI PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL
Sbjct: 439 RAIVPVLPAREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 498

Query: 467 VKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           + +       +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   ++  AL 
Sbjct: 499 MHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEVLAGALG 558

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RL IL+ +++ +     ++    PRV  + IP D+I  VIG  GK+I  I E TG
Sbjct: 559 QARDARLFILDVLAQAIDTP-DEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQIQEDTG 617

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + ++DDGTV I +S     +AAR+ + +I    +PE+ + + G VVK   FGAFV   
Sbjct: 618 ADLTVEDDGTVYIGASDGPSADAARDAVNAIANPQMPEIGERFVGTVVKTTTFGAFVSLT 677

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L
Sbjct: 678 PGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSL 726


>gi|16768780|gb|AAL28609.1| LD03255p [Drosophila melanogaster]
          Length = 720

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/703 (35%), Positives = 394/703 (56%), Gaps = 29/703 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V+Y+ +  A G+IP 
Sbjct: 1   MTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRIPM 60

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D   SP V+++ AAS
Sbjct: 61  NFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINAAS 120

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ-DAVLMVELEAN 193
            AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T+ + V+M+E + N
Sbjct: 121 MALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQNLVVMLEGKGN 180

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIKED 251
            + +  +L AI  G  E + +I  I +L K   ++   ++  ++   +L + +  M +  
Sbjct: 181 VVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPELGKAVRSMCEMR 240

Query: 252 LRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           LR        +K  R   +++++  ++    S         I   F      + R ++ +
Sbjct: 241 LREIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQTSRTIFRELIFE 300

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--- 366
           + +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L ++E    +DSL   
Sbjct: 301 RGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAAL 360

Query: 367 --SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
              G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P LP    +P+T+R
Sbjct: 361 DSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPTLPN--DYPFTVR 418

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDFIIL 476
           + SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV        K   D+ IL
Sbjct: 419 LTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRIL 478

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A   + +IL+ MS
Sbjct: 479 TDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSNILDIMS 538

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           + + E R    E  P  E + + P Q   +IG  G  ++ I  +TG  +   D+    + 
Sbjct: 539 EAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNVF 598

Query: 597 SSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHIS 650
           + S A ++ A+E     M++      E   IY  ++ ++ D G  V         L+H S
Sbjct: 599 APSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPALLHNS 658

Query: 651 QLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           QL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 659 QLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 701


>gi|326771722|ref|ZP_08231007.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
           C505]
 gi|326637855|gb|EGE38756.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
           C505]
          Length = 785

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/709 (38%), Positives = 400/709 (56%), Gaps = 36/709 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   GET VL+     +  KD  DFFPLTV+ +ER YA
Sbjct: 20  FGKRVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL  R+IDR +RP F K  +NE QV+  V+    +    V+
Sbjct: 80  AGRIPGSFFRREGRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT-----QD 183
           ++ AAS +  ++GLPF GPV G ++  I+G +V  PR  ++ + +  + V+G        
Sbjct: 140 AINAASMSTQIAGLPFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQMVVAGRVLESGDV 199

Query: 184 AVLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--- 228
           A++MVE  A +             +E VV + +       K + EA  ++A+  +K    
Sbjct: 200 AIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQLEVAQHASKPTAE 259

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SW 286
            P+ +D  D  + +          L  +     K  R    D ++ ++++  +       
Sbjct: 260 FPLYLDYTD-EQYDAVEKAAEAHGLAAAIATEGKQARDLATDAVRDEVLAELAESFPTEE 318

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +   + + F  +  K+VR   L + VRMDGR  + +R ++A+V +L R HGS++F RG+T
Sbjct: 319 DTRALKAAFRSVTKKIVRHRTLTEGVRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGET 378

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           Q + V TL     EQ VD LS      +M +YNF P +TGE  R+GAP RREIGHG LA 
Sbjct: 379 QILGVTTLNMLRMEQQVDDLSPVTHKRYMHNYNFPPFSTGETGRVGAPKRREIGHGNLAE 438

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL
Sbjct: 439 RALVPVLPTREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGL 498

Query: 467 VKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           + +       +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+   ++  AL 
Sbjct: 499 MHEVIDGETKWATLTDILGSEDAFGDMDFKVAGTRDFITALQLDTKLDGLPSEVLAGALG 558

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA+  RL IL+ +++ +     ++    PRV  + IP D+I  VIG  GK+I  I E TG
Sbjct: 559 QARDARLFILDVLAQAIDAP-DEMAPTAPRVLAVRIPVDKIGEVIGPKGKMINQIQEDTG 617

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFC 640
           A + ++DDGTV I +S     EAAR+ + +I    +PE+ + + G VVK   FGAFV   
Sbjct: 618 ADLTVEDDGTVYIGASDGPSAEAARDAVNAIANPQMPEIGERFVGTVVKTTTFGAFVSLT 677

Query: 641 GARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L
Sbjct: 678 PGKDGLLHISQIRRLVGGKRVENVEDVLNVGDKVQVELAEIDQRGKLSL 726


>gi|1588265|prf||2208281A 100RNP protein
          Length = 779

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/703 (38%), Positives = 407/703 (57%), Gaps = 60/703 (8%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            ++V+I +  R + +ETG I RQ+ GAV  T GET+V  TV       +  DFFPL+VNY
Sbjct: 75  PYSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNY 134

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  A G+  GG+ +RE RP +NE+L+ R+IDR +R    K + +ETQ++  V+ +D  
Sbjct: 135 QERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFYHETQILSWVLSYDGL 194

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
             P  +++ AA  A+ LS L    PV G +V  + G+Y++NP  +E +   LDL V+GT 
Sbjct: 195 HPPDALAVTAAGIAVALSELFHTKPVAGVRVGLVGGKYIVNPTTNEMENSELDLVVAGTD 254

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLE 241
            A+LM+E   N L E+ +L+A+  G +  + + + +  L + C K  ++   K    +L 
Sbjct: 255 SAILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGKPKMIDAIKLPPPELY 314

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV------------------SYFSSEH 283
           + + ++  ++L  +  I +K  R K +  L++K+V                        +
Sbjct: 315 KHVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVGKSVATVIPETLPDLY 374

Query: 284 SS-------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKV 312
                                            ++E ++  VF++  +K +R  +++   
Sbjct: 375 VDEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKETTSKYLRKRIVEGGR 434

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR- 371
           R DGR SE VR I+++ GLL R HGS+LF RG+TQA+ VVTLG ++  Q +D+L G    
Sbjct: 435 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 494

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             F + Y+F P   GE  R+GAPSRREIGHG LA RA+ P+LP   +FPYT+R+ S ITE
Sbjct: 495 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYTVRVESNITE 554

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDH 485
           S+GSSSMA+VCG SLAL+DAGVP+  P+AGIAMG+V D  +F      +ILSDI+G ED 
Sbjct: 555 SNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDA 614

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAG    +TA QMD+K+GGI+ ++M  AL QAK GR  IL EMSK L      
Sbjct: 615 SGDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAEMSKCLPPPSKT 674

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIE 604
           L  + P + +M + P+++  +IG GGK +R I+E TG + ++  DDGTVKI +  L  +E
Sbjct: 675 LSIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQDDGTVKITARDLESLE 734

Query: 605 AAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGL 646
            ++ MI ++T VP +  IY+   +K +  +GAFV     R+G 
Sbjct: 735 KSKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGF 777


>gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
           L37603]
 gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
           L37603]
          Length = 598

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/597 (43%), Positives = 381/597 (63%), Gaps = 6/597 (1%)

Query: 102 LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQY 161
           +F K YK++ Q++  V+  D + SP + +M+ +S AL +S +PF GP+ G  V Y++G+Y
Sbjct: 1   MFPKGYKHDVQIMNIVLSADPDCSPEMAAMIGSSMALSVSDIPFLGPIAGVNVGYVDGKY 60

Query: 162 VLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           V+NP + E +   LDL V+G +DAV MVE  A++++E  +L+AI FGH+E K ++     
Sbjct: 61  VINPTVAEKEVSRLDLEVAGHKDAVNMVEAGASEITESEMLEAIFFGHDEIKRLVAFQQG 120

Query: 221 LAKMCAKEP-IVIDSKDFSKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSY 278
           +      E    I  +    L E++  + +   L+ +    +K  R   +D LK+ +V+ 
Sbjct: 121 IIDYIQPEKQAFIPVERDEALVEKVKSLTEAKGLKDTVLTFDKQQRDINLDALKEDIVAE 180

Query: 279 FSSEHSSWNEGEIVSVF---EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           F  E    NE  I  V+    D+  + VR ++ D+K+R DGR  + +R + ++VGLL R 
Sbjct: 181 FIDEEDPDNEALIKEVYAILNDLVKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRA 240

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS LF RG TQA+ V+TLG   D Q +D L   +   FM HYNF   + GE   + AP 
Sbjct: 241 HGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEKRFMHHYNFPNFSVGETGPVRAPG 300

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG L  RA+  ++P T+ FPYT+RIVSE+ ES+GSSS A++CGS+LALMDAGVPI
Sbjct: 301 RREIGHGALGERALKYIIPDTSDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPI 360

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
             PVAGIAMGLV   D + IL+DI G ED LG MDFKVAGT  GITA+QMD+KI G++  
Sbjct: 361 KAPVAGIAMGLVTREDSYTILTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTRE 420

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QA++GRL I++ M + + + R +L  + P+V  M I P++IR+VIG GGK I 
Sbjct: 421 VIEEALEQARQGRLAIMDHMLQTIDQPRNELSAYAPKVVTMNIKPEKIRDVIGPGGKKIN 480

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I+++TG K++I+ DG + I +     I  ARE+I  IT   EV ++Y  +V ++  +GA
Sbjct: 481 EIIDETGVKLDIEQDGQIFIGAVDQEMINRAREIIEEITREAEVGQVYNAKVKRIEKYGA 540

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           FV     +D L+HISQ+STER+ K  DV+K GD++ VK+ + D +G++  S K +++
Sbjct: 541 FVELFPGKDALLHISQISTERINKVEDVLKLGDSIEVKVTEIDKQGRVNASHKAINE 597


>gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus
           cuniculus]
          Length = 784

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/718 (34%), Positives = 397/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L +                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGMKHTQQIIQGIQQLVREIGVTKRTPQKLFIPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 YAHKLAMEKLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEVDPYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           +V R ++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRNIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 361 QYVD----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              D    +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P  
Sbjct: 406 IKSDRITTAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS PVAG+A+GLV        D
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSPVAGVAIGLVTKNNSEKGD 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K LS+ R    E  P +E + +P  +    IG GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTLSKPRASRKENGPIIETVQVPLSKRAKFIGPGGYHLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  I + + + +  ARE I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSIFAPTPSAMHEAREFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/710 (33%), Positives = 393/710 (55%), Gaps = 28/710 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                +++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L    + +  +K  R + ++ ++     +   +    ++ EI+  F  +  
Sbjct: 286 YTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 406 IKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 704 AVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 753


>gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Callithrix jacchus]
          Length = 784

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/718 (33%), Positives = 401/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ TVV        Q F PL V+Y+++
Sbjct: 47  VAVDLGTRKLEISSGKLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI FG    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKFGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 HAHKLTMEKLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEADPFEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P  
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            DD+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IDDYRLLTDILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAVQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  V+  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPIVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTVSQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=Polynucleotide
           phosphorylase 1; Short=PNPase 1; Flags: Precursor
          Length = 783

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/718 (33%), Positives = 398/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 HTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPQADPYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R ++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+ 
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D     
Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|111023614|ref|YP_706586.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus jostii
           RHA1]
 gi|123339641|sp|Q0S208|PNP_RHOSR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110823144|gb|ABG98428.1| polyribonucleotide nucleotidyltransferase [Rhodococcus jostii RHA1]
          Length = 757

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/715 (39%), Positives = 411/715 (57%), Gaps = 44/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDEDQ-GSLDLFVSG-- 180
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +    D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLENAVFDMVVAGRI 204

Query: 181 -------------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
                              T + + +++  A   +E +V + +         +  A  +L
Sbjct: 205 VSGSGDDADVAIMMVEAEATDNVISLIDGGAQAPTEAIVAEGLEAAKPFIARLCTAQQQL 264

Query: 222 AKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
           A   +K     P+    +D   +   +     E L  +  I  K  R  + D++K +++ 
Sbjct: 265 AAKASKPTGDFPVFPAYQD--DVFAAVEAAAAEKLSAALTIAGKQERDDKTDEVKVEVLE 322

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
             +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HG
Sbjct: 323 QVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAIVPRAHG 381

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RR
Sbjct: 382 SALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPKRR 441

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  
Sbjct: 442 EIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPLKA 501

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 502 PVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIP 561

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  AL QAK  R  IL  M++ +     ++  F PRV  + +P D+I  VIG  GK+
Sbjct: 562 SKVLAGALSQAKDARATILEVMAEAIDTP-DEMSPFAPRVTAIKVPVDKIGEVIGPKGKM 620

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVM 631
           I  I EQTGA ++I+DDGTV + ++     +AA +MI +I    +P+V + + G VVK  
Sbjct: 621 INSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVKTT 680

Query: 632 DFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISL 735


>gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Pan troglodytes]
          Length = 783

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/718 (33%), Positives = 400/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 HTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+ 
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D     
Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos
           taurus]
 gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
 gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
          Length = 783

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/721 (33%), Positives = 397/721 (55%), Gaps = 29/721 (4%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             +V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y
Sbjct: 44  PRSVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDY 102

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  
Sbjct: 103 RQKAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGV 162

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT- 181
           + P V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP   E   S L+L V+G  
Sbjct: 163 NEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTLNLVVTGAP 222

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SK 239
           +  ++M+E  A  + +     AI  G    + +I+ I +L K                 +
Sbjct: 223 KSQIVMLEASAENILQQDFCHAIKVGVKHTQQIIQGIQQLVKENGVTKRTPQKLFVPSPE 282

Query: 240 LEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           + +   ++  E L    + +  +K  R + I+ ++         +    +  EI+  F  
Sbjct: 283 IVKHAHKLAMEKLYTVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPEVDSCEIIESFNI 342

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
               V R+++L++  R DGRD  ++R+I+ +V + +  HGSSLF RG TQ +  VT  + 
Sbjct: 343 ATKDVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSL 402

Query: 358 E----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           E     ++ + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA++PV+
Sbjct: 403 ESNFKSDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAERALYPVI 462

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----- 468
           P    FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV      
Sbjct: 463 P--KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSPD 520

Query: 469 --DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
             + +D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+K+ GI   I++ A+QQA  
Sbjct: 521 KGEIEDYRLLTDILGIEDYHGDMDFKIAGTSKGITALQADIKLPGIPIKIVMEAIQQASV 580

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            +  IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++
Sbjct: 581 AKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTIS 640

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-C 640
             D+ T  I + + + +  AR+ I  I         E   +Y   + ++ D G  V    
Sbjct: 641 QVDEETFSIFAPTPSAMHEARDFITDICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYP 700

Query: 641 GARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
                L+H +QL   ++   S + ++ G  + VK    D   G+++LS KV+ Q+    +
Sbjct: 701 NMTAVLLHNTQLDQRKIKHPSALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTV 759

Query: 699 V 699
           V
Sbjct: 760 V 760


>gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus
           norvegicus]
 gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus]
          Length = 784

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/710 (34%), Positives = 395/710 (55%), Gaps = 28/710 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  ASAAL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DILAINGASAALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I++I +L K                +++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQKIFTPSAEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L    + +  +K  R + ++ ++     +   +    ++ EI+  F  +  
Sbjct: 286 YTHTIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQLEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 406 IKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKR 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  MSK +S+ R    E  P VE + +P  +    IG GG  ++ +  +TG  ++  D
Sbjct: 584 EILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 704 AVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 753


>gi|311113230|ref|YP_003984452.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
           17931]
 gi|310944724|gb|ADP41018.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
           17931]
          Length = 753

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 282/713 (39%), Positives = 411/713 (57%), Gaps = 39/713 (5%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
             R ++ ETGR+A+Q+ G+VL T  + T +L+     +S ++G DFFPLTV+ +ER YA 
Sbjct: 33  GKRHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAA 92

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GKIPG + RRE RP    IL +R+IDR +RP F+K  +NE QV++ V+  + +   +  +
Sbjct: 93  GKIPGSFFRREGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIYNTFA 152

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-------- 181
           + AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G         
Sbjct: 153 INAASASTALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGS 212

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISK----LAKMCAK 227
              A++MVE EA   S  ++          + +  G    KP I A+ K    L +   K
Sbjct: 213 EDVAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPFIAALCKAQVDLVERAGK 272

Query: 228 EPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
             + +         ++  +     E L     I  K  R     +L+ +++   + E   
Sbjct: 273 PDLELPYFGGHGEDVDAAVKDFAGERLVEVYSIAGKQDREAAAAELEAELMEALTGEGKE 332

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E   E+   F  +    VR  +L ++VR+DGR    +R ++A+V +L R HGS++F R
Sbjct: 333 FEERANEVSVAFAALTKHTVRQRILTEQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 392

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 393 GETQIMGVTTLNMLKLEQQLDSLYPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 452

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 453 LAERALTPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 512

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 513 MGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 572

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL+ ++  +     ++ EF PR+  + +P  +I  VIG  GK+I  I E
Sbjct: 573 ALTQAREARLHILDVLTAAIDAP-DEMSEFAPRIISVKVPVAKIGEVIGPKGKMINQIQE 631

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I ++     EAAR  I +I    VPEV + Y G VVKV DFGAF+
Sbjct: 632 DTGADISIEDDGTVFIGATDGPSAEAARTAINAIANPQVPEVGERYLGTVVKVTDFGAFI 691

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 692 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLS 744


>gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens]
 gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens]
          Length = 783

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 241/718 (33%), Positives = 400/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 YTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+ 
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D     
Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Homo sapiens]
 gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|62988884|gb|AAY24271.1| unknown [Homo sapiens]
 gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo
           sapiens]
          Length = 783

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 241/718 (33%), Positives = 400/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 YTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+ 
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D     
Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|283458493|ref|YP_003363120.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
           DY-18]
 gi|283134535|dbj|BAI65300.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
           DY-18]
          Length = 739

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 285/712 (40%), Positives = 415/712 (58%), Gaps = 39/712 (5%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
             R ++ ETGR+A+Q++G+VL T  + T +L+  V  +S +DG DFFPLTV+ +ER YA 
Sbjct: 19  GKRHVRFETGRLAKQANGSVLVTIDDETTLLSATVVGKSPRDGFDFFPLTVDVEERMYAA 78

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GKIP  Y RRE RP+   IL +R+IDR +RP F+K  +NE QV++ V+ ++ +   +  +
Sbjct: 79  GKIPASYFRREGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYNPDEIYNTFA 138

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-------- 181
           + AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G         
Sbjct: 139 INAASASTTLSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGT 198

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISK----LAKMCAK 227
              A++MVE EA   S  ++          + +  G    KP I A+ K    LA    K
Sbjct: 199 EDVAIMMVEAEATDNSWKLIKEDGQTAPTEEVVAQGLEAAKPFIAALCKAQADLASRAGK 258

Query: 228 EPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
             + +         ++  + +   + L     I  K  R     +L+++++   + E   
Sbjct: 259 PALELPFFGGHGEDVDAAVKEFAADRLVEVYSIAGKQEREAAAAELQEELMEALTGEGKE 318

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E   E+   F  +   VVR  +L ++VR+DGR    +R ++A+V +L R HGS+LF R
Sbjct: 319 FEERSNEVSVAFAALTKHVVRQRILTEQVRIDGRGLTDIRQLTAEVEILPRVHGSALFER 378

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + + TL   + EQ +DSL   +   ++ HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 379 GETQIMGITTLNMLKMEQQLDSLHPVKSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 438

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 439 LAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 498

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 499 MGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 558

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL  +   +     ++ EF PR+  + IP  +I  VIG  GK+I  I E
Sbjct: 559 ALTQAREARLHILEVLVSAIDAP-DEMSEFAPRIISVKIPVAKIGEVIGPKGKMINQIQE 617

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I ++     EAAR  + +I    VPEV + Y G VVKV DFGAF+
Sbjct: 618 DTGADISIEDDGTVYIGAADGPSAEAARAAVNAIANPQVPEVGERYLGTVVKVTDFGAFI 677

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ L
Sbjct: 678 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSL 729


>gi|260905182|ref|ZP_05913504.1| polynucleotide phosphorylase/polyadenylase [Brevibacterium linens
           BL2]
          Length = 740

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 269/712 (37%), Positives = 407/712 (57%), Gaps = 40/712 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +    ++ ETGR+A+Q+ G+ +A   + T++ +     ++ ++G DFFPLTV+ +ER YA
Sbjct: 17  YGSHTIRFETGRLAQQAAGSAVAYLDDETMLFSATSAGKNPREGFDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + +L  R+IDR +RP F K  +NE QV++ VM    +     +
Sbjct: 77  AGRIPGSFFRREGRPSTDAVLTCRLIDRPLRPSFVKGLRNEVQVVVTVMSIHPDHIYDAL 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSG-------- 180
           ++ AAS +  LSGLPF GP+ G ++  I+ Q+V  P   + D    ++ V+G        
Sbjct: 137 AINAASMSTQLSGLPFSGPIGGVRIALIDDQWVAFPNHSQLDDAVFNMVVAGRVVGDDVA 196

Query: 181 --------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
                   T +A+  ++  A   +E+VV + +         +  A  +LA   AK     
Sbjct: 197 IMMVEAEATDNAIDRIKTGATAPTEEVVAEGLEAAKPFISELCRAQQELADSAAKPTVEF 256

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+  D +D   + E + ++ +     +  I +K  R    + L  ++        +   E
Sbjct: 257 PVFKDYQD--DVYEAVRELAEAKQTENFQIADKQEREAAGEVLLSELFDKLGERFAG-RE 313

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            EI      +  +VVR  +L +++R+DGR  + +R ++A+  ++ R HGS++F RG+TQ 
Sbjct: 314 KEIAGALNGLTKQVVRKRILTEQIRIDGRGLKDIRPLTAETNVIPRAHGSAIFERGETQI 373

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL   + EQ++DSLS      +M HYNF P + GE  R+G+P RREIGHG LA RA
Sbjct: 374 LGVTTLNMLKLEQHIDSLSPVTTKRYMHHYNFPPYSVGETGRVGSPKRREIGHGALAERA 433

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP+   FPY +R VSE   S+GS+SM +VC S+LA++ AGVP+  PVAGIAMGLV 
Sbjct: 434 LVPVLPKREDFPYAIREVSEALGSNGSTSMGSVCASTLAMLSAGVPLQAPVAGIAMGLVS 493

Query: 469 --------DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
                   D   +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+  +++  A
Sbjct: 494 DVISTDTGDQTAYAALTDILGAEDAFGDMDFKVAGTRDFITAIQLDTKLDGLPASVLGAA 553

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L+QA+  R+ IL+ +++ +     ++    PR+  + IP D+I  VIG  GK+I  + E 
Sbjct: 554 LKQAQEARMVILDVIAEAIDAP-AEMAPTAPRIISVNIPVDKIGEVIGPKGKMINQMQED 612

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA ++I+DDGTV I ++  A  EAAR MI +I    VPEV + Y G VVK M FGAFV 
Sbjct: 613 TGADISIEDDGTVLIGATDGAAAEAARSMINAIANPQVPEVGERYLGTVVKTMSFGAFVS 672

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
               +DGL+HIS+L      +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 673 LTPGKDGLLHISELRKLNDGKRVEDVEDVVGVGQKVQVEITKIDDRGKLSLS 724


>gi|226366103|ref|YP_002783886.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus opacus B4]
 gi|257096705|sp|C1B324|PNP_RHOOB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226244593|dbj|BAH54941.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus opacus B4]
          Length = 757

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 281/715 (39%), Positives = 411/715 (57%), Gaps = 44/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV+A   + T++L+     +  K+  DFFPLTV+ +ER YA
Sbjct: 25  FGTRTIRFETGRLAQQAAGAVVAYLDDETMLLSATSASKHPKEHFDFFPLTVDVEERMYA 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+ + IL  R+IDR +RP F    +NE QV++ VM  + +    VV
Sbjct: 85  AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVV 144

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYIN------GQYVLNPRLDEDQ-GSLDLFVSG-- 180
           ++ AASA+  ++GLPF GPV G +V  I       GQ+V  P +++ +    D+ V+G  
Sbjct: 145 AINAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLENAVFDMVVAGRI 204

Query: 181 -------------------TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
                              T + + +++  A   +E +V + +         +  A  +L
Sbjct: 205 VSGSGDDADVAIMMVEAEATDNVISLIDGGAQAPTETIVAEGLEAAKPFIARLCTAQQQL 264

Query: 222 AKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
           A   AK     P+    +D   +   +     E L  +  I  K  R  + D++K +++ 
Sbjct: 265 AVKAAKPTGDFPVFPAYQD--DVFAAVEAAAAEKLSAALTIAGKQERDDKTDEVKVEVLE 322

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
             +       E E+ + F  +  K+VR  +L  + R+DGR    +R +SA+V ++ R HG
Sbjct: 323 QVAPNFEG-REKELGAAFRSLTKKLVRQRILRDQFRIDGRGITDIRSLSAEVAIVPRAHG 381

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQ + V TL   +  Q VDSL       +M HYNF P +TGE  R+G+P RR
Sbjct: 382 SALFERGETQILGVTTLDMVKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPKRR 441

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+LAL++AGVP+  
Sbjct: 442 EIGHGALAERALMPVLPSVEEFPYAIRQVSEALSSNGSTSMGSVCASTLALLNAGVPLKA 501

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 502 PVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIP 561

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  AL QAK  R  IL  M++ +     ++  F PRV  + +P D+I  VIG  GK+
Sbjct: 562 SKVLAGALSQAKDARATILEVMAEAIDTP-DEMSPFAPRVTAIKVPVDKIGEVIGPKGKM 620

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVM 631
           I  I EQTGA ++I+DDGTV + ++     +AA +MI +I    +P+V + + G VVK  
Sbjct: 621 INSITEQTGANISIEDDGTVFVGATDGPSAQAAIDMINAIANPQLPKVGERFLGTVVKTT 680

Query: 632 DFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     RDGLVHIS+L S +R+AK  DVV  G  + V++ D D+RGKI L
Sbjct: 681 AFGAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISL 735


>gi|300743980|ref|ZP_07073000.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
           M567]
 gi|300380341|gb|EFJ76904.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
           M567]
          Length = 753

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 281/713 (39%), Positives = 410/713 (57%), Gaps = 39/713 (5%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
             R ++ ETGR+A+Q+ G+VL T  + T +L+     +S ++G DFFPLTV+ +ER YA 
Sbjct: 33  GKRHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAA 92

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GKIPG + RRE RP    IL +R+IDR +RP F+K  +NE QV++ V+  + +   +  +
Sbjct: 93  GKIPGSFFRREGRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIYNTFA 152

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-------- 181
           + AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G         
Sbjct: 153 INAASASTALSGAPFSGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGS 212

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISK----LAKMCAK 227
              A++MVE EA   S  ++          + +  G    KP I A+ K    L +   K
Sbjct: 213 EDVAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPFIAALCKAQVDLVERAGK 272

Query: 228 EPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
             + +         ++  +     E L     I  K  R     +L+ +++   + E   
Sbjct: 273 PDLELPYFGGHGEDVDAAVKDFAGERLVEVYSIAGKQDREAAAAELEAELMEALTGEGKE 332

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E   E+   F  +    VR  +L ++VR+DGR    +R ++A+V +L R HGS++F R
Sbjct: 333 FEERANEVSVAFAALTKHTVRQRILTEQVRIDGRGLTDIRQLTAEVEVLPRVHGSAIFER 392

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL   + EQ +DSL       ++ HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 393 GETQIMGVTTLNMLKLEQQLDSLYPVTSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 452

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 453 LAERALTPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 512

Query: 464 MGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D       +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 513 MGLVSDEVNGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 572

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL+ ++  +     ++ EF PR+  + +P  +I  VIG  GK+I  I E
Sbjct: 573 ALTQAREARLHILDVLTAAIDAP-DEMSEFAPRIISVKVPVAKIGEVIGPKGKMINQIQE 631

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I ++     EAAR  I +I    VPEV + Y G VVKV DFGAF+
Sbjct: 632 DTGADISIEDDGTVFIGATDGPSAEAARTAINAIANPQVPEVGERYLGTVVKVTDFGAFI 691

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ LS
Sbjct: 692 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSLS 744


>gi|158339001|ref|YP_001520178.1| polynucleotide phosphorylase/polyadenylase [Acaryochloris marina
           MBIC11017]
 gi|158309242|gb|ABW30859.1| polyribonucleotide nucleotidyltransferase [Acaryochloris marina
           MBIC11017]
          Length = 646

 Score =  636 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/630 (40%), Positives = 389/630 (61%), Gaps = 17/630 (2%)

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           +PGG+LRRE RP E   L  R+IDR +RPLF    +++ Q++   +  D +  P V+++ 
Sbjct: 1   MPGGFLRREGRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDVLAVT 60

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELE 191
            AS A +L+ +PF+GP+   +V  +   +++NP  +E  +G LDL V+G+ D V+MVE  
Sbjct: 61  GASVATLLAKIPFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLVVAGSPDGVIMVEAG 120

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQ 246
           AN+++E  +++AI FG+     +I+A  +L      E +       D    + ++E ++ 
Sbjct: 121 ANEVAEQDMIEAIDFGYEVVCDLIKAQKELIAELGIEQVEEAAPETDPTLENFVQERVTD 180

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS--------WNEGEIVSVFEDI 298
            +K+ L  + F  +K VR   +D++K+ +         +         N   I  VF+ I
Sbjct: 181 PVKDVL--ARFEKDKNVRDAALDEIKESVKVAIDELPETDPVQVAAVENPKAIGKVFKSI 238

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVTLGTR 357
              ++R  +++ KVR+DGR  + VR IS  VG+L  R HGS LF RG TQ + + TLGT 
Sbjct: 239 TKTLMRRQVVEDKVRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTP 298

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            D Q +D L    +  ++ HYNF P + GE   M +P RRE+GHG LA RA+ P+LP   
Sbjct: 299 GDAQEMDDLHPDSQKRYLHHYNFPPYSVGETRPMRSPGRREVGHGALAERALLPMLPSKE 358

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPY LR+VSE+  S+GS+SM +VCGS+L+LMDAGVP++KPV+G AMGL+K+G++  +L+
Sbjct: 359 EFPYVLRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLT 418

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED LG MDFKVAGT  GITA+QMDMKI G+S  ++  A+ QAK  RLHIL++M  
Sbjct: 419 DIQGIEDFLGDMDFKVAGTADGITALQMDMKITGLSMKVIAEAIHQAKPARLHILDKMLA 478

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +   R  +  + PR+  + I P+QI  +IG GGK I+GI E+TGAK++I+DDG V I++
Sbjct: 479 TIDSPRETMSPYAPRLLTIKIDPEQIGMIIGPGGKTIKGITEETGAKIDIEDDGRVTISA 538

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                   AR++I  +T       ++ G+V +++  GAFV    +++G++HISQL+  RV
Sbjct: 539 VDEKAASRARQIIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRV 598

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            K  D V  GD V VK+ + D+RG+I L+ 
Sbjct: 599 GKVEDEVTVGDEVVVKIRELDNRGRINLTR 628



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 13/208 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVL--ATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RP+    G + ++  G+ L   G T VL  AT+      ++  D  P +       Y   
Sbjct: 263 RPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPDSQKRYLHHYNFP 322

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVV 129
               G  R    P   E+    + +R++ P+    + +    +V+  V+  +  +S  + 
Sbjct: 323 PYSVGETRPMRSPGRREVGHGALAERALLPMLPSKEEFPYVLRVVSEVLSSNGSTS--MG 380

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVSGTQDA 184
           S+  ++ +LM +G+P   PV GA +  I  G+ V        +++  G +D  V+GT D 
Sbjct: 381 SVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEVRVLTDIQGIEDFLGDMDFKVAGTADG 440

Query: 185 VLMVELEA--NQLSEDVVLDAIIFGHNE 210
           +  ++++     LS  V+ +AI      
Sbjct: 441 ITALQMDMKITGLSMKVIAEAIHQAKPA 468


>gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens]
          Length = 783

 Score =  636 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 241/718 (33%), Positives = 400/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 YTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+ 
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D     
Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSVMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  636 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 238/710 (33%), Positives = 393/710 (55%), Gaps = 28/710 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                +++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L    + +  +K  R + ++ ++     +   +    ++ EI+  F  +  
Sbjct: 286 YTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 406 IKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 704 AVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 753


>gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Meleagris gallopavo]
          Length = 864

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 242/706 (34%), Positives = 390/706 (55%), Gaps = 28/706 (3%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
            + R ++L +G++AR +DGA +   G+T V+ T V        Q F PL V+Y+++  A 
Sbjct: 132 LSNRKMELSSGKLARFADGAAVVQLGDTAVMVTAVSKTKPSASQ-FMPLVVDYRQKAAAA 190

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IP  YLRRE   T+ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P V++
Sbjct: 191 GRIPTNYLRRELGTTDKEILTSRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLA 250

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMV 188
           +  ASAAL LS +P+ GPV   +V  ++G+ V+NP   +   S L+L V+   Q+ V+M+
Sbjct: 251 INGASAALALSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVML 310

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQ 246
           E  A  + +     AI  G  + + +I+ I +L K     K  +        ++ E   +
Sbjct: 311 EATAENILQQDFCHAIKVGVKQTQQIIQGIQQLVKERGVVKRNVQKLFVAPEEIVECAKK 370

Query: 247 MIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           +    +    + F  +K  R + I+ ++ +       +       EI+  F  +   + R
Sbjct: 371 LAFNKIYAVFTDFSHDKISRDEAINKIRLETEEQLKEKFPEAEPYEIMESFNAVSKDIFR 430

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L++  R DGRD  ++RDI  +V + +  HGS+LF RG TQ +  VT  + E     D
Sbjct: 431 NLILNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSD 490

Query: 365 ----SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA RA+ PV+P    FP
Sbjct: 491 LISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAERALKPVIP--QDFP 548

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-------KDGDDF 473
           +T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GLV       +D +D+
Sbjct: 549 FTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDLEGRDLEDY 608

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G ED+ G MDFK+AGT  G+TA+Q+D+K+ GI   I++ A+QQA   +  IL 
Sbjct: 609 RLLTDILGIEDYYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQQATAAKREILQ 668

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M++ L++ R    E  P VE + +P  +    +G G   ++ +  +TG  ++  D+ T 
Sbjct: 669 IMNETLAKPRPNRKESGPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTGVTLSQLDEETY 728

Query: 594 KIASSSLAEIEAAREMIRSITDV-----PEVNKIYKGQVVKVMDFGAFVHF-CGARDGLV 647
            + + + + +  ARE I  +         E   +Y   + ++ D G  V         L+
Sbjct: 729 SVFAPTPSAMHEAREFIGELCKDDQEVNLEFGAVYTATITEIRDSGVMVKLYPNMTPVLL 788

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           H SQL   ++   S + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 789 HNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVLQ 834


>gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 237/710 (33%), Positives = 392/710 (55%), Gaps = 28/710 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                +++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L    + +  +K  R + ++ ++     +   +    ++ EI+  F  +  
Sbjct: 286 YTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 406 IKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  I + +   +  AR+    I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSIFAPTPTAMHEARDFNTEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 704 AVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 753


>gi|145295879|ref|YP_001138700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum R]
 gi|187610291|sp|A4QEY2|PNP_CORGB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|140845799|dbj|BAF54798.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 753

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 277/725 (38%), Positives = 412/725 (56%), Gaps = 52/725 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DGAV     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 25  DFGTRTIRFETGQLARQADGAVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMY 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE Q+++ VM  + E    V
Sbjct: 85  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYYDV 144

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSG- 180
           V++  ASAA  +SGLP  G V G ++  +       GQ+V  P   + +Q   ++ V+G 
Sbjct: 145 VAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVAGR 204

Query: 181 -----------TQDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEA 217
                      +  AV+MVE  A++             +E +V D +         +  A
Sbjct: 205 LVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSDGLEAAKPFIDILCRA 264

Query: 218 ISKLAKMCA----KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273
              LA+       + P+     D  ++   + + + + L     +  K  R    +   +
Sbjct: 265 QEGLAQRVGNAAKEFPLFPPYTD--EVYSAVERKVSKKLASLLTLKAKQERDDATNAYME 322

Query: 274 KMVSYFSSEHSSWNE------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           ++ +    +  +          EI + +  +   +VR ++L    R+DGR    +RD++ 
Sbjct: 323 EIEAELLPKFEASYSSAAEASKEIRAAYNAVMKSIVRRMILTDHFRIDGRGVTDIRDLAV 382

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387
           +V L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+      +M HYNF P +TGE
Sbjct: 383 EVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDAKRYMHHYNFPPYSTGE 442

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
             R+G+P RREIGHG LA RA+ PV+P   +FPY++R VSE   S+GS+SM +VC S+L+
Sbjct: 443 TGRVGSPKRREIGHGALAERAVLPVIPSREEFPYSIRQVSEALGSNGSTSMGSVCASTLS 502

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           L +AGVP+  PVAGIAMGLV    D    ++ L+DI G ED  G MDFKVAGT   ITA+
Sbjct: 503 LYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILGAEDAFGDMDFKVAGTADFITAL 562

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q+D K+ GI   ++  AL+QA+  RL ILN M+ V++    ++ +F PR+  + IP  +I
Sbjct: 563 QLDTKLDGIPSKVLSDALEQARDARLTILNTMADVINGP-DEMSKFAPRITTVKIPVAKI 621

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNK 621
             +IG  GK I  + E+TGA ++I+DDGTV I+++  A  EAA E I ++    +P+V +
Sbjct: 622 GELIGPKGKNINALTEETGANISIEDDGTVFISAADGASAEAAIEKINALANPQLPKVGE 681

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVVK G+ + V++ D D+R
Sbjct: 682 RFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEKVDDVVKVGEKIQVEIADIDNR 741

Query: 681 GKIKL 685
           GKI L
Sbjct: 742 GKISL 746


>gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Mus musculus]
 gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus]
 gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus]
 gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus
           musculus]
          Length = 783

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 238/710 (33%), Positives = 393/710 (55%), Gaps = 28/710 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                +++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L    + +  +K  R + ++ ++     +   +    ++ EI+  F  +  
Sbjct: 286 YTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 406 IKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 704 AVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 753


>gi|95932676|gb|ABF57675.1| chloroplast polyribonucleotide phosphorylase [Chlamydomonas
           reinhardtii]
          Length = 854

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 280/710 (39%), Positives = 422/710 (59%), Gaps = 30/710 (4%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G+ +KLETG I RQ++GA++AT GET++ AT     S      F PLTVNY ER  A G
Sbjct: 93  GGKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAG 152

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +  GG+++R+ RP + E+L+SR++DR IRP+F+K + N+TQ++  V+ +D  + P  +++
Sbjct: 153 RTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAI 212

Query: 132 VAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVE 189
            AA+AAL++S +P +  V G +V    +G +++NP ++E +   LDL V+GT+DAVLM+E
Sbjct: 213 TAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIE 272

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMI 248
              + L+E+ +++A+  G      + + +   AK   K            +LE  + +++
Sbjct: 273 GFCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGKPKRTDAVVTVPEELESRLMELV 332

Query: 249 KEDLRVSCFIP-EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE----------------- 290
            + L  +      K VR   + + + + +   ++E  + +  E                 
Sbjct: 333 GDSLTAAYKTSLSKEVRGAAVAEAQARALEALAAESGAASGSETVGGNGNGGGGRSYTPL 392

Query: 291 -IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            I    E ++++V+R ++LD++VR DGR    +R ++ + GLL RTHGS+LF RG+TQ+I
Sbjct: 393 QISMALEAVESRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSI 452

Query: 350 VVVTLGTREDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
            V TLG+  D    D++        +   F + Y+F P + GE  R GAP RRE+GHG L
Sbjct: 453 CVATLGSANDALRSDTMRKPDGEDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGEL 512

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+ P+LP  AQFPYT+R+ S ITES+GSSSMA+VCG  LA+MDAGVPI++PVAGIAM
Sbjct: 513 AQRALAPILPDPAQFPYTVRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAM 572

Query: 465 GLVKD-GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           GL+ +      +LSDI G ED LG MDFKVAG    ITA QMD+K+ GI+ +IM  ALQQ
Sbjct: 573 GLILESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKVEGITLDIMAKALQQ 632

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK GR HIL++M+K        L    PR+  + I PD+   VIG GG+VI+ I + +GA
Sbjct: 633 AKAGRRHILDQMAKCAPPPANTLSAHAPRMMRLQIDPDKKGAVIGSGGRVIKQIRDVSGA 692

Query: 584 K-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV-KVMDFGAFVHFCG 641
             ++ID+ G V + + S      A E ++ +   PE   I++ + V  +  FG FV  C 
Sbjct: 693 TAIDIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCP 752

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            R GLVH+S+L        + VVK GD + V ++   D GK+ LS K V 
Sbjct: 753 GRQGLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQ 802


>gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 784

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 239/718 (33%), Positives = 398/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ E
Sbjct: 226 IVMMEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEIVE 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 HTHKLTMERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLREKFPEADTYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           ++ R+++L++  R DGRD  ++R+I+ +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EIFRSIILNEYKRCDGRDLTSLRNINCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P  
Sbjct: 406 MKSDQIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTVRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKNNPDKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT  GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTTKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  V+  D
Sbjct: 584 EIIQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTVSQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATSVV 760


>gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial precursor (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3-5 RNA
           exonuclease OLD35) [Equus caballus]
          Length = 784

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 239/718 (33%), Positives = 398/718 (55%), Gaps = 29/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FLPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFIPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 HTHKLAMERLYAVFTDYEHDKISRDEAVNKIRLDTEEQLKEKFPEVDPYEIIESFNVVSK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+I+ +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              ++ + +++G    +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P  
Sbjct: 406 IKSDRIITAINGVNDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISTAVAGVAIGLVTKNNPDKGE 523

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   + 
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 584 EILQIMNKTISKPRASRKENGPLVETIQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVD 643

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDAGVMVKLYPNMT 703

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 760


>gi|297571213|ref|YP_003696987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931560|gb|ADH92368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 809

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 272/707 (38%), Positives = 398/707 (56%), Gaps = 36/707 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETG +ARQ+ G  LA   GET VL+        K+  DFFPLTV+ +ER+YA
Sbjct: 34  FGTRTIRFETGLLARQAAGCALAYLDGETTVLSATAVSSQPKEHFDFFPLTVDVEERSYA 93

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP  + IL +R+IDR +RP F K  +NE QV+  V+    + +  VV
Sbjct: 94  AGRIPGSFFRREGRPGTDAILAARLIDRPLRPAFVKGLRNEVQVVATVLTIHPDDAYDVV 153

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT----QDA 184
           ++ AAS +  LSGLPF GP+ G ++  I+GQ+V  PR  E  + +  + V+G       A
Sbjct: 154 AINAASMSTQLSGLPFSGPIGGVRISLIDGQWVAFPRWSEMPRATFTMVVAGRIVGDDVA 213

Query: 185 VLMVELEANQLSEDVVL--------DAIIFGHNECKPVIEAISKLA--------KMCAKE 228
           ++MVE E  + + + +         + +  G    K  I  + +          K   + 
Sbjct: 214 IMMVEAEGGENAVENIAKGGVKPTEEVVAQGLEAAKTFIRTLCEAQQELAAQAAKPTEEY 273

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+    +D     + +   I         I +K+ R   +++L   +V     E     +
Sbjct: 274 PLFPSYEDAEY--DAVGGKIGSRFEELWGITDKHERDDALNELTTDIVESLGEEFPEREQ 331

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
              ++V      K +R  +L    RMDGR    +R I+A+  +L R HGS+LF RG+TQ 
Sbjct: 332 ALALAVNAHW-KKAMRERVLTTGERMDGRTPVEIRTITAESDILPRVHGSALFQRGETQI 390

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL   + EQ +D+LS      ++ HYNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 391 MGVTTLNMLKMEQQLDNLSPVTAKRYIHHYNFPPYSTGETGRVGSPKRREIGHGMLAERA 450

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+++LM+AGVP+   VAGIAMGLV 
Sbjct: 451 LVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTISLMNAGVPLKAVVAGIAMGLVS 510

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
              D    ++ L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI   ++  AL QA
Sbjct: 511 GEIDGEQRYVALTDILGAEDALGDMDFKVAGTRDFVTALQLDTKLDGIPAEVLAAALGQA 570

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              R  IL+ + + + E    + E  PR+  + IP D+I  VIG  GK+I  I + TGA+
Sbjct: 571 HDARQAILDLIEEAVPEP-DDMAETAPRIISVKIPVDKIGEVIGPKGKMINQIQDDTGAE 629

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           + I++DGTV I +++ +  EAAR+ I  I +  +PEV + + G VVK   FGAF+     
Sbjct: 630 ITIEEDGTVFIGATNGSSAEAARQTINQIANPTMPEVGERFVGTVVKTTTFGAFISLAPG 689

Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           +DGL+HISQ+      +RV    DV+  GD V V+L + D RGK+ L
Sbjct: 690 KDGLLHISQIRRLVGGKRVENVEDVLNVGDKVEVELAEIDQRGKLSL 736


>gi|255326374|ref|ZP_05367458.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
           25296]
 gi|255296591|gb|EET75924.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
           25296]
          Length = 739

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/712 (39%), Positives = 411/712 (57%), Gaps = 39/712 (5%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
             R ++ ETGR+A+Q+ G+VL T  + T +L+     +S ++G DFFPLTV+ +ER YA 
Sbjct: 19  GKRHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAG 78

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GKIP  Y RRE RP+   IL +R+IDR +RP F+K  +NE QV++ V+ ++ +   +  +
Sbjct: 79  GKIPASYFRREGRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYEPDEIYNTFA 138

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-------- 181
           + AASA+  LSG PF GP+ G ++  I+GQ+V  P+  + +    D+ V+G         
Sbjct: 139 INAASASTSLSGAPFNGPIGGVRMALIDGQWVCFPKYSQLENAVFDMAVAGRIVTKADGT 198

Query: 182 -QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISK----LAKMCAK 227
              A++MVE EA   S  ++          + +  G    KP I A+ K    L     K
Sbjct: 199 EDVAIMMVEAEATDNSWKLIKEDGQTAPTEEIVAEGLEAAKPFIAALCKAQADLVARAGK 258

Query: 228 EPIVIDSKDF--SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
             + +         ++  +     + L     I  K  R     +L+++++   + E   
Sbjct: 259 PALELPFFGGHGEDVDAAVEAFAADRLAEVYSIAGKQEREAAAAELQEELMEALTGEGKE 318

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           + E   E+   F  +   VVR  +L ++VR+DGR    +R ++A+V +L R HGS+LF R
Sbjct: 319 FEERSNEVSVAFAALTKHVVRQRILTEQVRIDGRGLTDIRQLTAEVEILPRVHGSALFER 378

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + + TL   + EQ +DSL   +   ++ HYNF P +TGE  R+G+P RREIGHG 
Sbjct: 379 GETQIMGITTLNMLKMEQQLDSLHPVKSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGA 438

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIA
Sbjct: 439 LAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIA 498

Query: 464 MGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI  +++  
Sbjct: 499 MGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIPASVLAG 558

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RLHIL  +   +     ++ EF PR+  + IP  +I  VIG  GK+I  I E
Sbjct: 559 ALTQAREARLHILEVLVSAIDAP-DEMSEFAPRIISVKIPVAKIGEVIGPKGKMINQIQE 617

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
            TGA ++I+DDGTV I ++     EAAR  + +I    VPEV + Y G VVKV DFGAF+
Sbjct: 618 DTGADISIEDDGTVYIGAADGPSAEAARAAVNAIANPQVPEVGERYLGTVVKVTDFGAFI 677

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HIS++      +RV    DVV  G  V V++   DDRGK+ L
Sbjct: 678 SLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITKIDDRGKLSL 729


>gi|91085763|ref|XP_974155.1| PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum]
 gi|270009999|gb|EFA06447.1| hypothetical protein TcasGA2_TC009329 [Tribolium castaneum]
          Length = 747

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 248/708 (35%), Positives = 398/708 (56%), Gaps = 28/708 (3%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR LK+ TG+ AR +DG  +AT G+T V+ T V         +F PL V+Y++++ A G
Sbjct: 42  NGRSLKISTGQYARLADGCAVATLGDTSVMVTAVSKTKPSP-SNFLPLVVDYRQKSAAAG 100

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IP  + RRE  P+E EIL SR+IDRS+RPLF + +  ETQV+ N++  D  ++P VVS+
Sbjct: 101 RIPTNFFRRELGPSEKEILTSRLIDRSLRPLFPERFAYETQVVCNMLAVDGVNNPDVVSI 160

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVE 189
            AASAAL LS +P+ GPV   ++  I+ + ++NP   E Q S L+L +S T ++ V+M+E
Sbjct: 161 NAASAALALSDIPWNGPVGAVRLGMIDNEVIINPTRKELQSSILNLVLSATRKNLVVMLE 220

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQM 247
             AN + +  +L A+  G  E + ++ +I KL K   K    I+    +  ++ E +  +
Sbjct: 221 GNANNILQQDLLKAVKLGTKEVQQIVASIEKLQKSYGKTKRNIEYPLEASHEVYEALRSL 280

Query: 248 IKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            +  +R   + +  +K  R   + D++  +     S  S  +       +  I  ++ R 
Sbjct: 281 SEMRVRKILTDYSLDKLGRDNALTDVRSDVTEKIKSNFSDLDMSVFSETYNKIVKQIFRD 340

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++  R DGRD + +R+I  +V L +  HGS++F RG TQ    VTL + +    +D 
Sbjct: 341 LVFEEGKRCDGRDYDQLRNIECKVNLYKPLHGSAMFQRGQTQVFCTVTLDSHDSAMKLDP 400

Query: 366 ----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
               +SG +  +F +HY F P AT E  R+G   RREIGHG LA + + P +P    FP+
Sbjct: 401 MAMLISGVKEKNFFLHYEFPPFATKETGRIGPIGRREIGHGALAEKGLTPSIP--DDFPF 458

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFI 474
           T+R+ SE+ ES+GSSSMA+VCG +LALMDAGVPI  P AG+A+GL+   D       D+ 
Sbjct: 459 TIRLTSEVLESNGSSSMASVCGGTLALMDAGVPIVAPAAGVAIGLITRYDDEKANITDYR 518

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+D+ G ED++G MDFK+AGT  GITA+Q D+KI G+   I++ ++Q+A   +  IL  
Sbjct: 519 LLTDLLGIEDYMGDMDFKIAGTKKGITALQADIKIPGLPLKIVMESIQKATEAKQKILQI 578

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + + + R    +  P  E + +   +   ++G+GG  ++ ++ +TG +V+  DD T +
Sbjct: 579 MHECIDKPRTVKKDNWPVSEKLKVEAHKRAKLVGVGGINLKKLLAETGVQVSAIDDTTFE 638

Query: 595 IASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVH 648
           I + + + ++ A+E I            E   IY   +V++ D G  V    G    L+H
Sbjct: 639 IFAPNQSAMDEAQEYINKLLTAEKVPDLEFGGIYTATIVELRDIGVMVTLYPGMPPALLH 698

Query: 649 ISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            SQL   +VA  S + ++ G  + VK    D   G ++LS KV+    
Sbjct: 699 NSQLDQRKVAHPSALDLEVGQEIQVKYFGRDPVSGLMRLSRKVLQAPP 746


>gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           S4-378]
          Length = 520

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 235/521 (45%), Positives = 339/521 (65%), Gaps = 6/521 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFS 238
           GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+      
Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSVF 295
           +LE E+    +  ++ +    EK  R   I+++K++++    +   E+ +   GE+  + 
Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEEVKEEILXXXKAKELENEAEILGEVAHIL 299

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL 
Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P 
Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ I
Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           LSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I
Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQI 520


>gi|293192221|ref|ZP_06609390.1| polyribonucleotide nucleotidyltransferase [Actinomyces
           odontolyticus F0309]
 gi|292820337|gb|EFF79330.1| polyribonucleotide nucleotidyltransferase [Actinomyces
           odontolyticus F0309]
          Length = 781

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/723 (39%), Positives = 414/723 (57%), Gaps = 42/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+
Sbjct: 79  AGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT------- 181
           ++ AAS +  ++GLPF GP+ G ++  I+ Q+V  PR  E + S  ++ V+G        
Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDG 198

Query: 182 --QDAVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
               A++MVE              A   +EDVV D +       K + EA  K+A+  +K
Sbjct: 199 SEDVAIMMVEAGGGKNQWELIQAGATAPTEDVVADGLEAAKPFIKVLCEAQLKVAEKASK 258

Query: 228 E----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
           E    P+ +D  D       +     E +  +     K  R + +D +K++M+   +   
Sbjct: 259 ETVEFPLFLDYTDEEY--AAVEDYAAEKVAQALLTEGKLARDEAVDAVKEEMLEALAERF 316

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
              +E  + + F  ++   +R   L +++RMDGR    +R +SA+V +L R HGS+LF R
Sbjct: 317 PE-SEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALFQR 375

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + + TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREIGHG 
Sbjct: 376 GETQILGITTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEVGRVGSPKRREIGHGD 435

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 436 LAERALVPVLPSREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIA 495

Query: 464 MGLVKDGDDF----IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    D     + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  
Sbjct: 496 MGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVLRA 555

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RL IL+ +++ +     ++    PR+  + +P D+I  VIG  GK+I  I +
Sbjct: 556 ALAQARDARLAILDLINQAIDGP-DEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQIQD 614

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
           +TGA V I+DDGTV IASS  A  +AAR M+  I    +PEV + + G VVK   FGAFV
Sbjct: 615 ETGADVTIEDDGTVYIASSDGASADAARTMVNQIANPQMPEVGERFVGTVVKTTSFGAFV 674

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                +DGL+HISQ+      +R+    DV++ G  V V++ +  DRGK+ L   V+D  
Sbjct: 675 SLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGDRGKLSL-HAVIDGE 733

Query: 694 TGK 696
            G+
Sbjct: 734 AGE 736


>gi|154509089|ref|ZP_02044731.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798723|gb|EDN81143.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
           17982]
          Length = 781

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 283/723 (39%), Positives = 414/723 (57%), Gaps = 42/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+
Sbjct: 79  AGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT------- 181
           ++ AAS +  ++GLPF GP+ G ++  I+ Q+V  PR  E + S  ++ V+G        
Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDG 198

Query: 182 --QDAVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
               A++MVE              A   +ED+V D +       K + EA  K+A+  +K
Sbjct: 199 SEDVAIMMVEAGGGKNQWELIQAGATAPTEDIVADGLEAAKPFIKVLCEAQLKVAEKASK 258

Query: 228 E----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
           E    P+ +D  D       + +   E +  +     K  R + +D +K++M+   +   
Sbjct: 259 ETVEFPLFLDYTDEEY--AAVEEYAAEKVAQALLTEGKLARDEAVDAVKEEMLEALAERF 316

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
              +E  + + F  ++   +R   L +++RMDGR    +R +SA+V +L R HGS+LF R
Sbjct: 317 PE-SEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALFQR 375

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREIGHG 
Sbjct: 376 GETQILGVTTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEVGRVGSPKRREIGHGD 435

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP    FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 436 LAERALVPVLPSREDFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIA 495

Query: 464 MGLVKDGDDF----IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    D     + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  
Sbjct: 496 MGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVLRA 555

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RL IL+ +++ +     ++    PR+  + +P D+I  VIG  GK+I  I +
Sbjct: 556 ALAQARDARLAILDLINQAIDGP-DEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQIQD 614

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
           +TGA V I+DDGTV IASS  A  EAAR M+  I    +PEV + + G VVK   FGAFV
Sbjct: 615 ETGADVTIEDDGTVYIASSDGASAEAARTMVNQIANPQMPEVGERFVGTVVKTTSFGAFV 674

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                +DGL+HISQ+      +R+    DV++ G  V V++ +  DRGK+ L   V+D  
Sbjct: 675 SLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGDRGKLSL-HAVIDGE 733

Query: 694 TGK 696
            G+
Sbjct: 734 AGE 736


>gi|19553179|ref|NP_601181.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390815|ref|YP_226217.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|81760356|sp|Q8NP50|PNP_CORGL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21324745|dbj|BAB99368.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Corynebacterium glutamicum ATCC 13032]
 gi|41326153|emb|CAF20316.1| PUTATIVE POLYRIBONUCLEOTIDE PHOSPHORYLASE / GUANOSINE
           PENTAPHOSPHATESYNTHETASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 753

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 277/725 (38%), Positives = 411/725 (56%), Gaps = 52/725 (7%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DGAV     + T++LAT       ++G DFFPLTV+ +ER Y
Sbjct: 25  DFGTRTIRFETGQLARQADGAVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMY 84

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE Q+++ VM  + E    V
Sbjct: 85  AAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYYDV 144

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDE-DQGSLDLFVSG- 180
           V++  ASAA  +SGLP  G V G ++  +       GQ+V  P   + +Q   ++ V+G 
Sbjct: 145 VAINGASAATRISGLPVSGAVGGVRMALVVDEKHPEGQWVAFPTHAQHEQSVFEIVVAGR 204

Query: 181 -----------TQDAVLMVELEANQL------------SEDVVLDAIIFGHNECKPVIEA 217
                      +  AV+MVE  A++             +E +V D +         +  A
Sbjct: 205 LVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAPAPTEKIVSDGLEAAKPFIDILCRA 264

Query: 218 ISKLAKMCA----KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKK 273
              LA+       + P+     D  ++   + + + + L     +  K  R    +   +
Sbjct: 265 QEGLAQRVGNAAKEFPLFPPYTD--EVYSAVERKVSKKLASLLTLKAKQERDDATNAYME 322

Query: 274 KMVSYFSSEHSSWNE------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           ++ +    +  +          EI + +  +   +VR ++L    R+DGR    +RD++ 
Sbjct: 323 EIEAELLPKFEASYSSAAEASKEIRAGYNAVMKAIVRRMILTDHFRIDGRGVTDIRDLAV 382

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387
           +V L+ R HGSSLF RG+TQ + V TL   + EQ +DSL+      +M HYNF P +TGE
Sbjct: 383 EVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDAKRYMHHYNFPPYSTGE 442

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
             R+G+P RREIGHG LA RA+ PV+P   +FPY +R VSE   S+GS+SM +VC S+L+
Sbjct: 443 TGRVGSPKRREIGHGALAERAVLPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLS 502

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           L +AGVP+  PVAGIAMGLV    D    ++ L+DI G ED  G MDFKVAGT   ITA+
Sbjct: 503 LYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILGAEDAFGDMDFKVAGTADFITAL 562

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q+D K+ GI   ++  AL+QA+  RL ILN M+ V++    ++ +F PR+  + IP  +I
Sbjct: 563 QLDTKLDGIPSKVLSDALEQARDARLTILNTMADVINGP-DEMSKFAPRITTVKIPVAKI 621

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNK 621
             +IG  GK I  + E+TGA ++I+DDGTV I+++  A  EAA E I ++    +P+V +
Sbjct: 622 GELIGPKGKNINALTEETGANISIEDDGTVFISAADGASAEAAIEKINALANPQLPKVGE 681

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + G VVK   FGAFV     RDGLVHIS+L   +RV K  DVVK G+ + V++ D D+R
Sbjct: 682 RFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEKVDDVVKVGEKIQVEIADIDNR 741

Query: 681 GKIKL 685
           GKI L
Sbjct: 742 GKISL 746


>gi|320094033|ref|ZP_08025857.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979038|gb|EFW10557.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 785

 Score =  631 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 279/712 (39%), Positives = 408/712 (57%), Gaps = 41/712 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGKRTIRFETGRLARQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERAYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+
Sbjct: 79  AGRIPGSFFRREGRPGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG---TQD-- 183
           ++ AAS +  ++GLPF GP+ G ++  ++GQ+V  PR  E + S  ++ V+G   T+D  
Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALVDGQWVAFPRWSELERSVFNIVVAGRIVTKDDG 198

Query: 184 ----AVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
               A++MVE              A   +E+VV D +       K +  A  ++A   +K
Sbjct: 199 SEDVAIMMVEAGGGKNEWELIQAGATAPTEEVVADGLEAAKPFIKALCRAQLEVAAKASK 258

Query: 228 E----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
           E    P+ +D  D       + + +   L  +     K  R   +D +K++M++  +   
Sbjct: 259 ETAEFPLFLDYTDEEY--SAVEECVGGKLAEALLTEGKLARDGAVDAVKEEMLAALADRF 316

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E  + + F  ++   +R   L  ++RMDGR    +R +SA+V +L R HGS+LF R
Sbjct: 317 PEG-EKNLKAAFRSLEKATIRARTLRDEIRMDGRTPRQIRSLSAEVEVLPRVHGSALFQR 375

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREIGHG 
Sbjct: 376 GETQILGVTTLAMLRMEQQIDNLSPVNSKRYMHQYNFAPFSTGEVGRVGSPKRREIGHGD 435

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP   +FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 436 LAERALVPVLPTREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIA 495

Query: 464 MGLVKDGDDF----IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    D     + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  
Sbjct: 496 MGLMTGEVDGQPKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQLLRA 555

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RL IL+ +++ +     ++    PR+  + +P D+I  VIG  GK+I  I +
Sbjct: 556 ALGQARDARLAILDLINQAIDGP-DEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQIQD 614

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAARE--MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            TGA + I+DDGTV IASS  A  EAAR      +   +PEV + + G VVK   FGAFV
Sbjct: 615 DTGADITIEDDGTVYIASSDGASAEAARTTINQIANPQMPEVGERFVGTVVKTTSFGAFV 674

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
                +DGL+HISQ+      +R+    DV++ G  V V++ +  DRGK+ L
Sbjct: 675 SLTPGKDGLLHISQVRRLVGGKRIESVDDVLQVGQQVEVEINEIGDRGKLSL 726


>gi|75349253|sp|Q53597|PNP_STRAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|642066|gb|AAB17498.1| guanosine pentaphosphate synthetase [Streptomyces antibioticus]
          Length = 740

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 273/708 (38%), Positives = 401/708 (56%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ +A   + T+VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 17  FGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYA 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +M  + +    VV
Sbjct: 77  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVV 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP  G +V  I GQ+V  P   E +    D+ V+G        
Sbjct: 137 AINAASASTQLAGLPFSGPYGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDV 196

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAK--------MCAK 227
           A++MVE EA + +  +V D         +  G +  KP I+ + K              +
Sbjct: 197 AIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 256

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+   +   +   E +S  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 257 FPVPSSTTRTTS--EALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-R 313

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +    +      ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 314 EKEISAAYRPWPSSSSAERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 373

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +M +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 374 ILGVTTLNMLRMEQQLDTLSPVTRKPYMHNYNFPPISVGETGRVGSPKRREIGHGALAER 433

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           AI PVLP   +FPY +R VSE   S+GS+SM +VC S+++L++AGVP+  PVAGIAMGL 
Sbjct: 434 AIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 493

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              +     ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 494 SQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 553

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+ M + +     ++    PR+  + IP D+I  VIG   ++I  I E TGA
Sbjct: 554 ARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGA 612

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +   PEV +   G VVK   FGAFV    
Sbjct: 613 EITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLP 672

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 673 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 720


>gi|315604465|ref|ZP_07879531.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314171|gb|EFU62222.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 780

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 284/723 (39%), Positives = 413/723 (57%), Gaps = 42/723 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ G+ LA   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 19  FGKRTVRFETGRLAKQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERQYA 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE R     IL +R+IDR +RP F K  +NE QV+  V+  D + +  V+
Sbjct: 79  AGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAYDVL 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT------- 181
           ++ AAS +  ++GLPF GP+ G ++  I+ Q+V  PR  E + S  ++ V+G        
Sbjct: 139 AINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTKEDG 198

Query: 182 --QDAVLMVELE------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
               A++MVE              A   +EDVV D +       K + EA  K+A+  +K
Sbjct: 199 TEDVAIMMVEAGGGKNEWDLIQAGATAPTEDVVADGLEAAKPFIKALCEAQMKVAEKASK 258

Query: 228 E----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
           E    P+ +D  D       + +   E +  +     K  R + +D +K++M+   +   
Sbjct: 259 ETAEFPLFLDYTDEEY--AAVQEWAGEKIAQALLTEGKLARDEAVDAVKEEMLEALAERF 316

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
               E  + + F  ++   +R   L +++RMDGR    +R +SA+V +L R HGS+LF R
Sbjct: 317 PEG-EKSLKAAFRSLEKATIRGRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALFQR 375

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQ + V TL     EQ +D+LS      +M  YNF P +TGEV R+G+P RREIGHG 
Sbjct: 376 GETQILGVTTLAMLRMEQQIDNLSPVNSKRYMHQYNFAPFSTGEVGRVGSPKRREIGHGD 435

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA RA+ PVLP    FPY +R VSE   S+GSSSM +VC S+L+L+ AGVP+  PVAGIA
Sbjct: 436 LAERALLPVLPSREDFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIA 495

Query: 464 MGLVKDGDDF----IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           MGL+    D     + L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI   ++  
Sbjct: 496 MGLMTGEVDGQAKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQLDTKLDGIDSQVLRA 555

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL QA+  RL IL+ +S+ +     ++    PR+  + +P D+I  VIG  GK+I  I +
Sbjct: 556 ALAQARDARLAILDLISQAIDGP-DEMSPNAPRIITVKVPVDKIGEVIGPKGKMINQIQD 614

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFV 637
           +TGA V I+DDGTV IAS+  A  EAAR M+  I    +PEV + + G VVK   FGAFV
Sbjct: 615 ETGADVTIEDDGTVYIASADGASAEAARTMVNQIANPQMPEVGERFVGTVVKTTSFGAFV 674

Query: 638 HFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                +DGL+HISQ+      +R+    DV++ G  V V++ +  DRGK+ L   V+D  
Sbjct: 675 SLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEINEIGDRGKLSL-HAVIDGE 733

Query: 694 TGK 696
            G+
Sbjct: 734 AGE 736


>gi|269795632|ref|YP_003315087.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Sanguibacter keddieii DSM 10542]
 gi|269097817|gb|ACZ22253.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Sanguibacter keddieii DSM 10542]
          Length = 735

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 270/719 (37%), Positives = 410/719 (57%), Gaps = 37/719 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+  A   GET++L+     +  KD  DFFPLTV+ +ER YA
Sbjct: 18  FGTRTVRFETGRLARQAAGSAAAYLDGETMLLSATTVGKHPKDQFDFFPLTVDVEERMYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP+   IL  R+IDR +RP F K  +NE QV++ V+    + +   +
Sbjct: 78  AGRIPGSFFRREGRPSTEAILTCRLIDRPLRPTFVKGLRNEVQVVVTVLAAHPDDAYDTL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT----QDA 184
           ++  AS +  LSGLPF GPV   ++  ++GQ+V  P+  + ++   D+ V+G       A
Sbjct: 138 AINVASLSTQLSGLPFSGPVGAVRIALVDGQWVAFPKYSDKEKAVFDMVVAGRVAGDDVA 197

Query: 185 VLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLA--------KMCAK 227
           ++MVE EA   S  ++          + +  G    K  I  + +          K   +
Sbjct: 198 IMMVEAEATDNSWTLIKDEGVAAPTEEVVAEGLEASKVFIRQLCEAQAALAARAAKPVRE 257

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D +     +   +   L  +  I +K  R  ++D++K + +   + +     
Sbjct: 258 FPLFLDYQDDAY--AAIEAQVATPLGQALTIADKQDRENRLDEIKAEALEALAGQFEG-R 314

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E E+ +    +  K++R  +L   VR+DGR    +R +SA+V ++ R HGS++F RG+TQ
Sbjct: 315 EKELSAAVRSVTKKLIRQRVLTDGVRIDGRGLADIRTLSAEVEVVPRVHGSAIFERGETQ 374

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + + TL     EQ +DSL    R  +M +YNF P +TGE  R+G+P RREIGHG LA R
Sbjct: 375 IMGITTLNMLRMEQQIDSLGPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAER 434

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVAGIAMGL+
Sbjct: 435 ALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLI 494

Query: 468 KDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
            D  D    +  L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  +++  AL Q
Sbjct: 495 SDTVDGKPRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLGGALTQ 554

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  R  IL+ + + +     ++    PRV  + +P D+I  VIG  GK+I  I E+TGA
Sbjct: 555 ARDARFAILDVLGEAIDVP-DEMSPHAPRVIAVKVPVDKIGEVIGPKGKMINQIQEETGA 613

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            ++I+DDGTV I ++     EAAR  I +I    VPEV + + G VVK+  FGAF+    
Sbjct: 614 DISIEDDGTVYIGATDGPSAEAARAAINAIANPHVPEVGERFVGTVVKIAPFGAFISLSP 673

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L   V +   G+
Sbjct: 674 GKDGLLHISQIRKLVGGKRVENVEDVLSIGQKVQVEIGEVDPRGKLSLHAVVDEAEAGQ 732


>gi|219119866|ref|XP_002180684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408157|gb|EEC48092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 830

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/703 (37%), Positives = 408/703 (58%), Gaps = 24/703 (3%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           P+ +ETG+I RQ+ GAV  T G++V+ AT  +D+  K+  DF PL+V+YQER  + G   
Sbjct: 89  PICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTS 148

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GGY +R+ RP E+EIL  R+IDR +RPL    +++ETQ++  V+ +D E S   ++++A+
Sbjct: 149 GGYNKRDGRPAEHEILTCRLIDRPLRPLIQSGWRHETQLLSWVLSYDGERSCDPLAIIAS 208

Query: 135 SAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEA 192
           +++L +S +P   PV   QV   + G  V+NP   + + S L+L V+GT++AVLM+E  A
Sbjct: 209 ASSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSKLNLMVAGTEEAVLMIEGAA 268

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKED 251
           + L E  ++ A+  GH   + + + ++ L K+  KE  +   K   + L+  + ++  + 
Sbjct: 269 DFLPESTMIQAVKTGHEAIQVLCQGLTALGKVAGKEKKLDTIKATPENLQIRVDELFSDR 328

Query: 252 LRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           +         K  + K + DL   +V     ++       I   F+D+  + +     ++
Sbjct: 329 IDDMWSSGLGKEAQGKIMTDLYTAVVGELIEDYPGETVA-IKGAFKDLLCRRMFFRAREE 387

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R DGR    +R ++ + GLL R HGS+LF RG+TQ +   TLG     Q ++ L GT 
Sbjct: 388 GLRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTD 447

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              F + Y F P   GE  R+GAP RRE+GHG LA RA+ P +P  A FPYT+R+ S IT
Sbjct: 448 EKRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIRVESLIT 507

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------KDGDDFIILSDISGDED 484
           ES GSSSMA+VCG SLALMDAGVPI  PVAGIAMG++         ++ +ILSDI G ED
Sbjct: 508 ESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVILSDILGTED 567

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            LG MDFKVAG   GI+  Q+D+K  G++   M  AL+QA+ GRLH+L+EM KV++  R 
Sbjct: 568 ALGTMDFKVAGDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEMEKVIASPRE 627

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEI 603
           +L    P++   +IP + I  +IG GGK IR I+E      +++ ++G V+++S   A++
Sbjct: 628 ELPATVPKMMSFSIPVEAIGKIIGPGGKQIRAIIEDFELVNMDVGEEGGVQLSSFDTAKM 687

Query: 604 EAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFC--------GARDGLVHISQLST 654
             A+  I ++    P   + Y G++  +  FG F+              +GLVH+S+L+ 
Sbjct: 688 GEAQTFITTLVRPEPVEGETYTGKITGIHPFGVFLEILPGAEDGSYPGLEGLVHVSELAH 747

Query: 655 ERVAKTSDVVKEG--DTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ERV      +K    + + VK L  D +GK++LS K + +  G
Sbjct: 748 ERVRNCEGFMKSMNVEELTVKYLGKD-KGKLQLSRKALLEEQG 789


>gi|194246773|ref|YP_002004412.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
           mali]
 gi|257096701|sp|B3QZG1|PNP_PHYMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193807130|emb|CAP18568.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
           mali]
          Length = 728

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/719 (38%), Positives = 434/719 (60%), Gaps = 32/719 (4%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    EI +    L++E G I+RQ++G+V+  Y +TV+L+  V     K+  +F PLTVN
Sbjct: 9   NKKVFEIIFENNVLRIEIGEISRQANGSVMLFYKDTVILSVAVCGDK-KNSLNFLPLTVN 67

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ YA GKIPGG+LRRE +P++ EIL SR+IDR+IRPLFSK +KNE Q+I  V+  D 
Sbjct: 68  YQEKLYAAGKIPGGFLRREGKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDP 127

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + +   ++++ +S AL++S +PF  PV    V  I    ++NP L + +  S  L ++GT
Sbjct: 128 DGNNENIALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLILAGT 187

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +D++ MVE+ + ++SE+  L++I FGH   K +    +++A    K  I I   + + L 
Sbjct: 188 KDSLNMVEMSSKEISENNFLESIKFGHEIIKKLCLFQTEIANQIGKTKIKIPLHNVNNLL 247

Query: 242 E-EMSQMIKEDLRVSCFIP---EKYVRCKQIDDLKKKMVSYFSS---------------E 282
           E E+      ++ +            +   +  LK+ ++  +                 E
Sbjct: 248 EVEIKDKYFSEIEMILKNKCNVNNVKKSDILKKLKENVLENYKEKFLNNKKDNFNLLDLE 307

Query: 283 HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI 342
           +      E+  +F+ +   ++R  +L + +R DGR+S  +R I++++ +L RTHGS+LF 
Sbjct: 308 NQKLYLNEVEIIFDFLVRTIIRETILKENIRPDGRNSSEIRSITSRIDILPRTHGSALFT 367

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           RG TQ++ +VTLGT  + + +D LS      FM+HYNF   A G V R  APSRREIGHG
Sbjct: 368 RGGTQSLAIVTLGTLRESKIIDDLSDEVDKRFMLHYNFPAFAVGSVGRYLAPSRREIGHG 427

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+  VLP    FPY++R+VSEI +S+GSSS AT+C SS+ALM AGVP+   VAG+
Sbjct: 428 MLAEKALECVLPSENDFPYSIRVVSEILDSNGSSSQATICASSMALMSAGVPLKSLVAGV 487

Query: 463 AMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AMGL+ D  D    + ILSDI G ED+ G +DFK+AGT  GITA+Q+D+KI GI+  I  
Sbjct: 488 AMGLIVDDIDKINHYTILSDIEGLEDYQGDIDFKIAGTKVGITALQLDIKIKGITLEIFE 547

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
             L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG GGK+I  I+
Sbjct: 548 KVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSGGKIINQII 607

Query: 579 EQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD----- 632
           E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++++ +      
Sbjct: 608 EKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILRFVKDKMDK 667

Query: 633 -FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            FGA        +G +HIS+L   +V K  DV+K G  + VK +  ++RG+I LS K V
Sbjct: 668 TFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIILVKCIKINERGQIDLSKKDV 726


>gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
 gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
          Length = 705

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 270/688 (39%), Positives = 404/688 (58%), Gaps = 13/688 (1%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG++A+ + GAV+   GET VL TVV D  L  G+DF PL V Y+E++YA GKIP 
Sbjct: 15  LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            ++RRE  P E E+L  R+IDRSIRPLF K Y  ETQ++ NV+  D E  P +++  AAS
Sbjct: 75  TFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLSSDGEQDPDILAANAAS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ 194
           AAL LS +P+ GP+   ++  ++G++V+NP +D      L+L  S T +  LM+E +A +
Sbjct: 135 AALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSCTAERSLMIETQARE 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIKEDLR 253
           ++      A+   H+E   +IE   +LA         +   K  + + E++  + +E ++
Sbjct: 195 ITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDAPVLEKIRGLSEEHIK 254

Query: 254 VSCFIP--EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKK 311
                P   K+ R K +    + +      E+           F+ ++ ++VR  +  K 
Sbjct: 255 AVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDTVKKQIVRENVFQKN 314

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    VRD+  + G+    HGSSLF RG+TQ +  VTLG  ED Q +DS+ G  +
Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-FPYTLRIVSEIT 430
             FM+HY+F P +  EV ++G  +RRE+GHG LA +A+  +LP   + FPY++R+ SE+ 
Sbjct: 375 KRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPEDENFPYSVRVNSEVM 434

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGDE 483
            SDGSSSMATVCG SLALMDAG+P+   VAGI++GL+ + D       ++ IL+DI G E
Sbjct: 435 ASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLITNVDAETGEIKNYKILTDILGLE 494

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           DHLG MDFK+AGT  G+TA+Q+D+K+ G+  +I+  AL+ A   R  IL+ M K +S+ R
Sbjct: 495 DHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEKEISKPR 554

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
               + TPR   + I  + I  +IG  G  IR +   +GA++ + +DG V I S S    
Sbjct: 555 DTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGEDGNVHIISRSEKSF 614

Query: 604 EAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + A+ MI ++      V + Y G V  + DFGAF+ F G + GL+HIS++S E V+  +D
Sbjct: 615 KVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLHISEISHEPVSSIAD 674

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+  G  + V     D RG +K S K V
Sbjct: 675 VLSVGQQITVLCTGRDFRGNLKFSRKAV 702


>gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
           nucleotidyltransferase 1, mitochondrial-like [Nomascus
           leucogenys]
          Length = 778

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 235/718 (32%), Positives = 391/718 (54%), Gaps = 34/718 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 HTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVTK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+ 
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS PVAG+A+GLV   D     
Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSPVAGVAVGLVTKTDPEKGE 523

Query: 472 --DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA     
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASGE-- 581

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                      + R    E  P VE + +P  +    +G GG  ++ +  + G  ++  D
Sbjct: 582 ---LVSXTNYFKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQLKQGVTISQVD 638

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 639 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 698

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 699 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 755


>gi|255073611|ref|XP_002500480.1| predicted protein [Micromonas sp. RCC299]
 gi|226515743|gb|ACO61738.1| predicted protein [Micromonas sp. RCC299]
          Length = 838

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 284/746 (38%), Positives = 418/746 (56%), Gaps = 54/746 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T+ +      + +ETGRI RQ++GAV+ T GETV+ AT+   R +     F PLTVNY
Sbjct: 51  PKTLTLRIGESEVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVPLTVNY 110

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QER  AVG+  GGY +R+    ENE LI R++DR +RP+  K +  +TQ++  V+ +D  
Sbjct: 111 QERYSAVGRTAGGYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQILEWVLSYDGA 170

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQ-GSLDLFVSG 180
            S   +++ AAS A  +S +P + P+ G +V  + G+   ++NP  ++ +   LDL ++G
Sbjct: 171 RSTDALAITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDLVLAG 230

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK- 239
           T+DAV+M+E   + L+   +L AI  GH         I   AK   +           + 
Sbjct: 231 TEDAVMMIEGFGDFLTTQEMLYAIEKGHEAVANACRDIDAWAKDVGRVKNEAAVLVAPEG 290

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH---------------- 283
           +++ +  ++  +L  +  I  K  R   ++ ++ + +   +                   
Sbjct: 291 VDDAVRALVGAELAEAMAISVKQTRGAAVEGIRARAIESLAGGDDAKFTVSAVRRPAQSL 350

Query: 284 ----------------------------SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMD 315
                                           E ++       ++  +R+++    VR D
Sbjct: 351 RFAFCALLLFSLFPPGPRAFSRPFVRLPPPALENDVRLACGRCESNALRSMIRANGVRQD 410

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GRD++TVR I+   GLL RTHGSSLF RG+TQAI   TLG   D Q VD L   +   F 
Sbjct: 411 GRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKDRRFY 470

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
           +HY F P + GE  R+GA SRRE+GHG LA RA+ PV+P    FP+T+R+ S ITES+GS
Sbjct: 471 LHYFFPPSSVGETGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLESTITESNGS 530

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDF 491
           SSMATVC  SLAL DAGVPI++ VAGIAMGL+      G+  +IL+DI G ED LG MDF
Sbjct: 531 SSMATVCAGSLALQDAGVPITRKVAGIAMGLILGDESAGEAPVILTDILGSEDALGDMDF 590

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           KVAG   GI+A QMD+K+ GI+  ++  AL+ A+ G +HIL EM K       ++  + P
Sbjct: 591 KVAGDGDGISAFQMDIKVEGITLAVLREALESARVGLVHILGEMDKADPAPAGRMSAYAP 650

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMI 610
           +VE++ +P   I  VIG GG+ I+ I EQT    ++I+++G V +  S   ++  A E+I
Sbjct: 651 QVEVVEVPTKYIGKVIGKGGEQIKAICEQTKIDTIDINEEGVVTLTGSFGCDMPKAVEII 710

Query: 611 RSITDVPEVNKIYKG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           RS+T  PEV K Y+  +V KV+DFGAFV      +GL H+S+L   RVA   DVV+EG T
Sbjct: 711 RSLTVEPEVGKTYRNARVTKVLDFGAFVEILPGVEGLCHVSELDVTRVANVRDVVEEGQT 770

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + VKLL+ ++RG+ KLS + V  + G
Sbjct: 771 IDVKLLETNERGQFKLSRRAVLLDEG 796


>gi|321469848|gb|EFX80827.1| hypothetical protein DAPPUDRAFT_243159 [Daphnia pulex]
          Length = 743

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 392/707 (55%), Gaps = 31/707 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           G+ L  ++G+ AR +DG+ +A++G+T VL T V          F PLTV+Y+++  A G+
Sbjct: 23  GKKLVFQSGKYARFADGSAVASFGDTAVLVTAVSKAKSSPAS-FLPLTVDYRQKAAAAGR 81

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  +LRRE   +E EIL SRMIDRS+RPLF   Y  ETQV+ N++  D  + P V+S+ 
Sbjct: 82  IPTNFLRRELGTSEREILTSRMIDRSLRPLFPDGYFYETQVVCNLLSVDGVNDPEVLSIN 141

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMVEL 190
           AASAAL +S +P+ GPV   +V +I+ + V+NP   E     L+L VS T  + V+M+E 
Sbjct: 142 AASAALAISDIPWNGPVAAVRVGFIDNEVVINPTRRELAHSQLNLVVSSTFPNLVVMLEA 201

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMI 248
            A  + +   L AI  G  EC+ + +AI KL +   K             +L   +  + 
Sbjct: 202 SAENVYQQDFLKAIRTGVKECQTIAKAIEKLREDAGKPKREFTVLPSGSEELLSAVKLLS 261

Query: 249 KEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           +  LRV    F  +K  R   +  ++  ++    +     +   I   F     +  R +
Sbjct: 262 ENRLRVILRDFNHDKISRDVAVATVRNDVMEKLRTSFPDTDPMIISESFNKFFKEFFRQL 321

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD+++R DGR    +R+IS  V L +  HGS++F RG TQ +  V   + E     D +
Sbjct: 322 ILDEEIRCDGRKLTDIRNISCGVDLYKPLHGSAIFQRGQTQVVCTVAFDSPESALKSDPV 381

Query: 367 S----GTQRNDFMMHYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLPQTAQF 419
           S    G +  +F +HY F P AT E  R+   G+  RRE+GHG LA + + PV+P    +
Sbjct: 382 SILMGGLKAKNFFLHYEFPPYATNETGRVGSGGSAGRRELGHGALAEKGLRPVVPS--DY 439

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-------KDGDD 472
           P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVPI +P AG+A+GLV       K  DD
Sbjct: 440 PFTIRLTSEVLESNGSSSMASVCGGSLALMDAGVPILQPAAGVAVGLVSRVNPETKQIDD 499

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+D+ G ED+LG MDFK+AGT  GITA+Q D K+ G+   I++ ++ QA   + HIL
Sbjct: 500 YRILTDLLGIEDYLGDMDFKLAGTKKGITALQADFKLPGVPLKIIMESVVQASDAKSHIL 559

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M++ + + R    +  P  E + I   +    +G+GG  ++ +  +TG ++   DD T
Sbjct: 560 DIMAQTIKQPRNDKKDIWPLSEKLEIEAHKRPKFVGIGGSNLKKLTAETGVQITSIDDLT 619

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVN-----KIYKGQVVKVMDFGAFVHF-CGARDGL 646
             I + + + ++ A+EMI       +        IYK ++V++ + G  V F       L
Sbjct: 620 FSIFAPNQSAMDEAKEMIEQFLKEEKEPELEFGAIYKARIVEMKETGVLVTFYPKMVPTL 679

Query: 647 VHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           +H SQL   +VA  S + ++ GD + +K    D   G+++LS KV+ 
Sbjct: 680 LHNSQLDVRKVAHPSALGLQVGDEISIKYFGRDPVSGRMRLSRKVLQ 726


>gi|323356776|ref|YP_004223172.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
           StLB037]
 gi|323273147|dbj|BAJ73292.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
           StLB037]
          Length = 765

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 275/731 (37%), Positives = 418/731 (57%), Gaps = 48/731 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV A   E T++L+     +  ++G DFFPLTV+ +ER+YA
Sbjct: 18  FGTRTIRFETGRLAQQAQGAVAAYLDEETMLLSATSAGKHPREGFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE Q+++ V+          +
Sbjct: 78  AGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSIAPGEFYDAL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING------QYVLNPRLDEDQ-GSLDLFVSGT- 181
           ++ AAS +  +SGLPF GP+ G ++  I G      Q+V  P+ ++ +    DL V+G  
Sbjct: 138 AINAASMSTQISGLPFSGPIAGVRLALIPGHGEHADQWVAFPKAEQLEDAVFDLIVAGRV 197

Query: 182 ----QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPV----IEAISKLAKMC 225
                 A++MVE EA + S +++           +  G    KP     ++A +++A+  
Sbjct: 198 LDDGDVAIMMVEAEATEGSWNLIKGGATKPNEQVVAEGLEAAKPFLRQLVDAQNEVARTA 257

Query: 226 AKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS 281
           +KE    P+       +   + ++    + L     I +K  R    D++K  +     +
Sbjct: 258 SKEIQSFPVFPAYSQETY--DFVAGRAYDRLVPVYQIADKQERQNADDEVKTSVKEQLLA 315

Query: 282 -----EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
                E  +    E  + ++ +   +VR  +L + VRMDGR    +R + A+V ++ R H
Sbjct: 316 AVESGELPAVATLEFNAAYKSVTKTIVRGRILAEGVRMDGRGLADIRPLDAEVQVIPRVH 375

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           GS++F RG+TQ + V TL   + EQ +DSLS      ++ HYNF P +TGE  R+G+P R
Sbjct: 376 GSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITSKRYLHHYNFPPYSTGETGRVGSPKR 435

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           REIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+ 
Sbjct: 436 REIGHGFLAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLR 495

Query: 457 KPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            PVAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   ITA+Q+D K+ GI
Sbjct: 496 APVAGIAMGLVTDEVDGQTRYAALTDILGAEDALGDMDFKVAGTAEFITAIQLDTKLDGI 555

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +++  AL QAK  RL ILN ++  +     ++    PRV  + IP D+I  +IG  GK
Sbjct: 556 PSSVLAAALTQAKEARLTILNVLNAAIDAP-DEMAPTAPRVISVQIPVDKIGELIGPKGK 614

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKV 630
            I  I ++TGA+++I+DDGTV I ++     EAAR  + +I +   PEV + + G VVK+
Sbjct: 615 TINSIQDETGAQISIEDDGTVYIGATDGPSAEAARAQVNAIANPTNPEVGEQFLGTVVKI 674

Query: 631 MDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
             FGAFV     +DGL+H+S++      +RV    DV+  G  + V++   DDRGK+ L 
Sbjct: 675 ATFGAFVSLLPGKDGLLHVSEVRKLAGGKRVENVEDVLSVGRKILVRITKIDDRGKLSLE 734

Query: 687 MKVVDQNTGKP 697
             V+D++   P
Sbjct: 735 -PVLDEDAATP 744


>gi|304390809|ref|ZP_07372761.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304325692|gb|EFL92938.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 830

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/726 (38%), Positives = 416/726 (57%), Gaps = 43/726 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +A+Q+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 55  KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+    + +  V
Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT------ 181
           V++ A+S A  L+GLPF GP+ GA++  I+GQ+V  P   + +Q + ++ ++G       
Sbjct: 175 VAINASSMATQLAGLPFSGPIGGARLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLA-------- 222
                A++MVE    + + D++ +         +    +  KP I+ + +          
Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K   + P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E
Sbjct: 295 KETQEYPLFPDYEDN--HFEAMKSEVEADLLAAIQIADKLTRENRETEIRDAAIEKLAVE 352

Query: 283 --HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
                  E E+ + F+ ++ K+VR  +L +  R+DGR  + +R +SA+V +L R HGS+L
Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIG
Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPATHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA  A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+A
Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532

Query: 461 GIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL+ +    G  F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  ++
Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ M   +     +L    PR+  + IP D+I  VIG  GK+I  
Sbjct: 593 LKGALGQARDARLKILDVMHAAIDGP-DELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFG 634
           I E TGA++ I+DDGTV I + +    EAAR+ + +I    +PEV + + G VVK   FG
Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711

Query: 635 AFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L   VV
Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSL-HAVV 770

Query: 691 DQNTGK 696
           D   G+
Sbjct: 771 DDEDGE 776


>gi|298345251|ref|YP_003717938.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
           ATCC 43063]
 gi|315656413|ref|ZP_07909302.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298235312|gb|ADI66444.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
           ATCC 43063]
 gi|315492972|gb|EFU82574.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 830

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/728 (38%), Positives = 416/728 (57%), Gaps = 43/728 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +A+Q+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 55  KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+    + +  V
Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT------ 181
           V++ A+S A  L+GLPF GP+ G ++  I+GQ+V  P   + +Q + ++ ++G       
Sbjct: 175 VAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLA-------- 222
                A++MVE    + + D++ +         +    +  KP I+ + +          
Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K   + P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E
Sbjct: 295 KETQEYPLFPDYEDN--HFEAMKSEVEADLLAAIQIADKLTRENRETEIRDAAIEKLAVE 352

Query: 283 --HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
                  E E+ + F+ ++ K+VR  +L +  R+DGR  + +R +SA+V +L R HGS+L
Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIG
Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPVTHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA  A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+A
Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532

Query: 461 GIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL+ +    G  F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  ++
Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ M   +     +L    PR+  + IP D+I  VIG  GK+I  
Sbjct: 593 LKGALGQARDARLKILDVMHAAIDGP-DELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFG 634
           I E TGA++ I+DDGTV I + +    EAAR+ + +I    +PEV + + G VVK   FG
Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711

Query: 635 AFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L   VV
Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSL-HAVV 770

Query: 691 DQNTGKPI 698
           D   G+ +
Sbjct: 771 DDEDGEAV 778


>gi|149640866|ref|XP_001510386.1| PREDICTED: similar to polynucleotide phosphorylase-like protein
           [Ornithorhynchus anatinus]
          Length = 764

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 244/710 (34%), Positives = 391/710 (55%), Gaps = 29/710 (4%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
            L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++  A G+IP
Sbjct: 35  KLEISSGKLARFADGCAVVQLGDTSVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIP 93

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
             YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  + P V+++  A
Sbjct: 94  TNYLRRELGSSDKEILTSRIIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLAINGA 153

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEA 192
           SAAL LS +P+ GPV   +V  ING+ V+NP   E   S L+L V+G  +  V+M+E  A
Sbjct: 154 SAALSLSDIPWNGPVGAVRVGLINGECVINPTRREMASSALNLVVAGAPRSQVVMLEAAA 213

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIKE 250
             + +     AI  G    + +I+ I +L K                 ++ + +  +  E
Sbjct: 214 ENVLQQDFSHAIKVGMKHTQQIIQGIQQLVKEGGMAKRTPQKLFTAPPEIVKCVQNLATE 273

Query: 251 DLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
            +    + F  +K  R + I+ ++         +    +  EI+  F  +  +V R+++L
Sbjct: 274 KIYAVFTDFNHDKISRDEAINKIRLDTEEQLKEKFPEADPFEIIESFNVVSKEVFRSIVL 333

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD---- 364
           ++  R DGRD  ++RDIS +V + +  HGS+LF RG TQ +  VT  + E     D    
Sbjct: 334 NEYRRCDGRDLTSLRDISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDLITS 393

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           ++SG +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A+ PV+P    FP+T+R
Sbjct: 394 AVSGVKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALIPVVP--KDFPFTMR 451

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV-------KDGDDFIILS 477
           + SE+ ES+GSSSMA+ CG SLALMDAGVP+S  VAG+A+GL+       ++ +D+ +++
Sbjct: 452 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAIGLITKNNSEKEEIEDYRLMT 511

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +  IL  M++
Sbjct: 512 DILGIEDYNGDMDFKMAGTNKGITALQADIKLPGIPIKIVMEAIQQATVAKREILQIMNR 571

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S+ R    E  P VE + +P  +    +G GG  I+ +  +TG  ++  D+ T  + +
Sbjct: 572 TISKPRASRKENGPVVETVQVPLSRRAKFVGPGGYNIKKLQAETGVTISQVDEETFSVFA 631

Query: 598 SSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQ 651
            +   +  A E I  I         E   +Y   + ++ D G  +         L+H SQ
Sbjct: 632 PTPTAMHEAAEFINEICKDDQEQQLEFGAVYTATITEIRDIGVMIKLYSNMTPVLLHNSQ 691

Query: 652 LSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           L   +V   S + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 692 LDQRKVRHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL-QSPATTVV 740


>gi|323191874|gb|EFZ77122.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
          Length = 499

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 239/487 (49%), Positives = 330/487 (67%), Gaps = 2/487 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 13  NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 73  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 133 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  +  L
Sbjct: 193 EAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDAL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+ 
Sbjct: 253 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEK 312

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D 
Sbjct: 313 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +FP
Sbjct: 373 QVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 432

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           YT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSDI 
Sbjct: 433 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 492

Query: 481 GDEDHLG 487
           GDEDHLG
Sbjct: 493 GDEDHLG 499


>gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
 gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
          Length = 705

 Score =  621 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 273/689 (39%), Positives = 405/689 (58%), Gaps = 15/689 (2%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L  ETG++A+ + GAV+   GET VL TVV D  L  G+DF PL V Y+E++YA GKIP 
Sbjct: 15  LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDERLDAGRDFMPLQVEYREKSYAQGKIPN 74

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            ++RRE  P E E+L  R+IDRSIRPLF K Y  ETQ++ NV+  D E  P +++  AAS
Sbjct: 75  TFMRREGAPKERELLCGRVIDRSIRPLFPKGYYFETQIMANVLCSDGEQDPDILAANAAS 134

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ 194
           AAL LS +P+ GP+   ++  ++G++V+NP +D      L+L  S T +  LM+E +A +
Sbjct: 135 AALALSDVPWNGPIGVVRIGRVDGKFVVNPDMDTLSGSDLNLIYSCTAERSLMIETQARE 194

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSKLEEEMSQMIKEDL 252
           ++      A+   H+E   +IE   +LA      K P+ +   D   L E++  + +E +
Sbjct: 195 ITNKDFTAALKLAHSEASKLIEPQRRLAAKVGNRKRPVQVVKVDVPVL-EKIRGLSEEHI 253

Query: 253 RVSCFIP--EKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
           +     P   K+ R K +    + +      E+           F+ ++ ++VR  +  K
Sbjct: 254 KAVVNNPTLGKFERGKALGKAMENVQDILKKENDEAALSRFSLGFDTVKKQIVRENVFQK 313

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R+DGR    VRD+  + G+    HGSSLF RG+TQ +  VTLG  ED Q +DS+ G  
Sbjct: 314 NIRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPP 373

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ-FPYTLRIVSEI 429
           +  FM+HY+F P +  EV ++G  +RRE+GHG LA +A+  +LP   + FPY++R+ SE+
Sbjct: 374 KKRFMVHYSFPPFSVNEVGKVGGLNRREVGHGTLAEKALVALLPPEDENFPYSVRVNSEV 433

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDISGD 482
             SDGSSSMATVCG SLALMDAG+P+   VAGI++GL+ + D       ++ IL+DI G 
Sbjct: 434 MASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVGLMTNVDAETGEIKNYKILTDILGL 493

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFK+AGT  G+TA+Q+D+K+ G+  +I+  AL+ A   R  IL+ M K +S+ 
Sbjct: 494 EDHLGDMDFKIAGTKKGVTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLMEKEISKP 553

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R    + TPR   + I  + I  +IG  G  IR +   +GA++ + +DG V I S S   
Sbjct: 554 RDTQRQDTPRRGTIVIQRESIGRLIGPSGSNIRHLQSVSGARLTVGEDGNVHIISRSEKS 613

Query: 603 IEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            + A+ MI ++      V + Y G V  + DFGAF+ F G + GL+HIS++S E V   +
Sbjct: 614 FKVAKSMIEALVGREIIVGETYTGTVSAIKDFGAFIDFDGGQQGLLHISEISHEPVTAIA 673

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DV+  G  + V     D RG +K S K V
Sbjct: 674 DVLSVGQQITVLCTGRDFRGNLKFSRKAV 702


>gi|315655673|ref|ZP_07908571.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315489737|gb|EFU79364.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 830

 Score =  621 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/728 (38%), Positives = 415/728 (57%), Gaps = 43/728 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +A+Q+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 55  KFGKRVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 114

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  V+    + +  V
Sbjct: 115 AAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAYDV 174

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGT------ 181
           V++ A+S A  L+GLPF GP+ G ++  I+GQ+V  P   + +Q + ++ ++G       
Sbjct: 175 VAINASSMATQLAGLPFSGPIGGTRLALIDGQWVAFPTYPEMEQSTFNMVIAGRVVNEGT 234

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLA-------- 222
                A++MVE    + + D++ +         +    +  KP I+ + +          
Sbjct: 235 PEEDVAIMMVEAGGGEYAWDLIQEGKQAPTEDVVASALDAAKPFIKELCRAQSAVAAKAA 294

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K   + P+  D +D     E M   ++ DL  +  I  K  R  +  +++   +   + E
Sbjct: 295 KETQEYPLFPDYEDN--HFEAMKSEVEADLLAAIQIAYKLTRENRETEIRDAAIEKLAVE 352

Query: 283 --HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
                  E E+ + F+ ++ K+VR  +L +  R+DGR  + +R +SA+V +L R HGS+L
Sbjct: 353 GGEFEEQEKELKAAFKALEKKLVRARVLHEGKRIDGRGLKDIRSLSAEVEVLPRVHGSAL 412

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIG
Sbjct: 413 FQRGETQVLGVTTLNMLRMEQQLDNLSPVTHKRYMHQYNFPPYCTGETGRVGSPKRREIG 472

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA  A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+A
Sbjct: 473 HGHLAEMALEPVIPAREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIA 532

Query: 461 GIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL+ +    G  F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  ++
Sbjct: 533 GIAMGLMSEPGENGTQFATLTDILGAEDAFGDMDFKVAGTQDFITALQLDTKLDGIPADV 592

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA+  RL IL+ M   +     +L    PR+  + IP D+I  VIG  GK+I  
Sbjct: 593 LKGALGQARDARLKILDVMHAAIDGP-DELAPTAPRILTVNIPVDKIGEVIGPKGKMINQ 651

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFG 634
           I E TGA++ I+DDGTV I + +    EAAR+ + +I    +PEV + + G VVK   FG
Sbjct: 652 IQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFG 711

Query: 635 AFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           AF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L   VV
Sbjct: 712 AFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEVAEIDQRGKLSL-HAVV 770

Query: 691 DQNTGKPI 698
           D   G+ +
Sbjct: 771 DDEDGEAV 778


>gi|50954610|ref|YP_061898.1| polynucleotide phosphorylase/polyadenylase [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|81391079|sp|Q6AFQ2|PNP_LEIXX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50951092|gb|AAT88793.1| polyribonucleotide nucleotidyltransferase [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 761

 Score =  621 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/724 (37%), Positives = 409/724 (56%), Gaps = 52/724 (7%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGRIA+Q+ GAV A   E T++L+     +  KD  DFFPLTV+ +ER+YA
Sbjct: 18  FGARTVRFETGRIAQQAQGAVAAYLDEETMLLSATSASKHPKDNFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE Q+++ V+    +     +
Sbjct: 78  AGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSIAPDEFYDAL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYING------QYVLNPRLDE-DQGSLDLFVSGT- 181
           ++ AASA+  +SGLPF GP+ G ++  I G      Q+V  P+  + ++   DL V G  
Sbjct: 138 AINAASASTQISGLPFSGPIAGVRLALIPGNGAHEDQWVAFPKASQLEEAVFDLIVVGRV 197

Query: 182 ---------QDAVLMVELEANQLSEDVV--------LDAIIFGHNECKPVIE----AISK 220
                      A++MVE EA + S +++         + +  G    KP I     A + 
Sbjct: 198 LTNEDGTEGDVAIMMVEAEATEGSWNLIQGGAVKPNEEVVAQGLEAAKPFIRQLVGAQAA 257

Query: 221 LAKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
           LAK  AK     P+ +     +   + ++ +  ++L     I +K  R    D LK+++ 
Sbjct: 258 LAKQSAKAIADYPVFLPYSQETY--DSVAALAYDELVNVYQIADKVERQNADDALKERVK 315

Query: 277 SYFSSEH-----SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331
           +  + +       +    +  + ++ +   V+R  +L + VR+DGR    +R + A+V +
Sbjct: 316 AALAEKAQAGALDAEALTQFSAAYKSVSKVVMRGRVLREGVRIDGRGLTDIRPLDAEVQI 375

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391
           + R HGS++F RG+TQ + V TL   + EQ +DSLS   +  ++ HYNF P +TGE  R+
Sbjct: 376 IPRVHGSAVFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRYLHHYNFPPYSTGETGRV 435

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G+P RREIGHG LA RA+ PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++A
Sbjct: 436 GSPKRREIGHGFLAERALVPVLPSREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNA 495

Query: 452 GVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           GVP+  PVAGIAMGL+ D       +  L+DI G ED LG MDFKVAGT   +TA+Q+D 
Sbjct: 496 GVPLRAPVAGIAMGLISDVIDGETRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDT 555

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI  +++  AL+QAK  R  IL+ +   +     ++    PRV  + IP D+I  +I
Sbjct: 556 KLDGIPSSVLASALKQAKDARTTILSVLDAAIDAP-DEMAPTAPRVISVQIPVDKIGELI 614

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--SITDVPEVNKIYKG 625
           G  GK I  I ++TGA ++ID+DGTV I +      EAAR  +   +    PEV + + G
Sbjct: 615 GPKGKTINAIQDETGADISIDEDGTVYIGAVDGPSAEAARAQVNVIANPTNPEVGEQFLG 674

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            VVK   FGAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRG
Sbjct: 675 TVVKNAAFGAFVSLLPGKDGLLHISEVRKLAGGKRVESVDDVLSIGQKILVEITKIDDRG 734

Query: 682 KIKL 685
           K+ L
Sbjct: 735 KLSL 738


>gi|260804641|ref|XP_002597196.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
 gi|229282459|gb|EEN53208.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
          Length = 723

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/703 (35%), Positives = 379/703 (53%), Gaps = 29/703 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +++ TG+ AR +DG  +   G+T  + T V  R+      F PLTV+Y+++  A G+I
Sbjct: 12  RVMRISTGKFARFADGCAVVEIGDTSAMVTAV-SRTRPSSAGFLPLTVDYRQKAAAAGRI 70

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRRE   T+ EIL+SR+IDRSIRPLF   Y  ETQVI N++  D  + P + S+  
Sbjct: 71  PTTHLRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPDIASING 130

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ-DAVLMVELE 191
           AS AL LS  P+ GP+   +V  ++ +YV+NP   +  +  L+L V+G + + V+M+E  
Sbjct: 131 ASTALALSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLNLVVTGAERNLVVMLEGS 190

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIK 249
           A  +       AI  G  E + +I  I  L K   KE            ++ E+  Q+  
Sbjct: 191 AENVLLPDFQRAIKTGIKETQKIIRGIQTLQKEIGKEKRTPPKLFTPPEEILEQARQLAT 250

Query: 250 EDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           E L+V        K+ R   + +++ ++               I      I  +V R ++
Sbjct: 251 ERLQVVFTDATHHKFSRDNAVQEIRAEVEQKLKELFPEAEPFMINESISVITKQVFRNLI 310

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS-- 365
           LD   R DGRD  ++RDIS  V L +  HGS+LF RG TQ +  VT  +++    +D   
Sbjct: 311 LDTYQRCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIA 370

Query: 366 --LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             L G ++ DFM+HY F P AT E  R+ + SRRE+GHG LA  A+ PV+P    FP+T+
Sbjct: 371 EILGGVKQKDFMLHYVFPPYATNETGRVSSNSRRELGHGALAENALKPVVPS--DFPFTI 428

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DFII 475
           R+ +E+ ES+GSSSMA+ C  SLALMDAGVPIS PVAG+A+GLV   D        D+ +
Sbjct: 429 RLTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNNPTEIQDYKL 488

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G ED++G MDFK+AGT  G+TA+Q D+K+ G+   I++ A QQA   +  I+N M
Sbjct: 489 LTDILGIEDYMGDMDFKMAGTKKGVTALQADIKLPGLPLKIIMEATQQATMAKSDIINIM 548

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           ++ L++ R    E+ P  E + +P  +    +G GG  IR I  +TG  +   D+ T  +
Sbjct: 549 NRALAKPRNTRKEYGPVSEQLKVPMAKRAQFVGPGGYNIRKITAETGVTITQVDEETFSV 608

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQVVKVMDFGAFVHFCG-ARDGLVHI 649
            + + A +  ARE I  +       +     IY   + ++ + G  V      +  L+H 
Sbjct: 609 FAPNTAAMNEAREEIDQLLKDKREPQLDFGAIYTATITEIRESGVMVKLFPTMQPTLLHN 668

Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           SQL   RV+  S +    G  + VK    D   G ++LS KV+
Sbjct: 669 SQLDHRRVSHPSALGFDVGQEMSVKYFGRDPATGMMRLSRKVL 711


>gi|11514023|pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
           Enzyme
          Length = 757

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/708 (38%), Positives = 395/708 (55%), Gaps = 37/708 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+ +A   + T VL+     ++ KD  DFFPLTV+ +ER YA
Sbjct: 34  FGTRTIRFETGRLARQAAGSAVAYLDDDTXVLSATTASKNPKDQLDFFPLTVDVEERXYA 93

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  +   + +    VV
Sbjct: 94  AGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIXALNPDHLYDVV 153

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-----QD 183
           ++ AASA+  L+GLPF GP+ G +V  I GQ+V  P   E +    D  V+G        
Sbjct: 154 AINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDXVVAGRVLEDGDV 213

Query: 184 AVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAISKLAK--------MCAK 227
           A+  VE EA + +  +V D         +  G +  KP I+ + K              +
Sbjct: 214 AIXXVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGE 273

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            P+ +D +D   + E +S  ++ +L  +  I  K  R  ++D +K         E     
Sbjct: 274 FPVFLDYQD--DVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEG-R 330

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E EI + +  +   +VR  ++ +K R+DGR    +R ++A+V  + R HGS+LF RG+TQ
Sbjct: 331 EKEISAAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQ 390

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
            + V TL     EQ +D+LS   R  +  +YNF P + GE  R+G+P RREIGHG LA R
Sbjct: 391 ILGVTTLNXLRXEQQLDTLSPVTRKRYXHNYNFPPYSVGETGRVGSPKRREIGHGALAER 450

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL- 466
           AI PVLP   +FPY +R VSE   S+GS+S  +VC S+ +L++AGVP+  PVAGIA GL 
Sbjct: 451 AIVPVLPTREEFPYAIRQVSEALGSNGSTSXGSVCASTXSLLNAGVPLKAPVAGIAXGLI 510

Query: 467 ---VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
              +     ++ L+DI G ED  G  DFKVAGT   +TA+Q+D K+ GI  +++  AL+Q
Sbjct: 511 SQEINGETHYVALTDILGAEDAFGDXDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQ 570

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+  RLHIL+   + +     +     PR+  + IP D+I  VIG   + I  I E TGA
Sbjct: 571 ARDARLHILDVXXEAIDTP-DEXSPNAPRIITVKIPVDKIGEVIGPKRQXINQIQEDTGA 629

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDFGAFVHFCG 641
           ++ I+DDGT+ I ++     EAAR  I  I +   PEV +   G VVK   FGAFV    
Sbjct: 630 EITIEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLP 689

Query: 642 ARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            +DGL+HISQ+      +RV    DV+  G  V V++ + D RGK+ L
Sbjct: 690 GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737


>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
 gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
          Length = 808

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/726 (37%), Positives = 411/726 (56%), Gaps = 55/726 (7%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H+V I    R + LETG I RQ+ GAV  + GET++  TV       +  DF PL V+Y 
Sbjct: 68  HSVRIPVGDRQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYH 127

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER  A G+  GG+ +RE +P ++E+ ISR++DR +RP+  K Y +E QV+  V+ +D   
Sbjct: 128 ERYSAAGRTSGGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSYDGSH 187

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P  +++ AA AAL LS +P   PV G +V YING+YVLNP   E  + SLD+ ++GT D
Sbjct: 188 LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVTKSSLDMIMAGTSD 247

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLEE 242
            +LM+E   N LSED ++ A+  G    K + + + +  +   ++  ++ +    S LEE
Sbjct: 248 GLLMIEGYCNLLSEDELVKAVETGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEE 307

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-------------WNEG 289
            + +++ +DL ++  I  K  R   I  L+KK+ S  + E  +             W+E 
Sbjct: 308 RIKEIVGDDLYLALHIRGKQPRAAVITALEKKVWSKLTEEGVALSKTREQLEYAHVWDED 367

Query: 290 EIVS-----------------------------VFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           EI                                F++  +K +++++  +KVR DGR   
Sbjct: 368 EIKDGEIDQGDVHITPTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGIS 427

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-NDFMMHYN 379
            VR IS    LL R HGS++F RG+TQA+V V LG     Q +D ++       F + Y 
Sbjct: 428 DVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYV 487

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F     GEV R+G  SRREIGHGRL  R++ P+ P    FPYT+R+ S ITES+GSSSMA
Sbjct: 488 FPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFPSK--FPYTVRVESTITESNGSSSMA 545

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKV 493
           +VCG+ LAL DAGVP+  P+AG+AMGL+ D  ++      +IL+DI G ED  G MD KV
Sbjct: 546 SVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKV 605

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AG+  GITA QMD+K+ GI+ +I+  AL +AK  R HIL EM+        +L +    +
Sbjct: 606 AGSKEGITAFQMDLKVQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLI 665

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRS 612
           + + +  +++  V+G GGK +R I++ +G + V++  DG+++I      +++ A E IRS
Sbjct: 666 DFVKVGREKVNMVVGTGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRS 725

Query: 613 ITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           IT  P V  +Y+   VK +  FG F+     R+GL HIS+L+T R+++  + V  G+ + 
Sbjct: 726 ITTDPTVGTVYRNCPVKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLD 785

Query: 672 VKLLDF 677
           VK+++ 
Sbjct: 786 VKVIEV 791


>gi|269219591|ref|ZP_06163445.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269210833|gb|EEZ77173.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 765

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 274/707 (38%), Positives = 399/707 (56%), Gaps = 36/707 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETG +ARQ++G+ LA   + T V A     ++ K+  DFFPLTV+ +ER+YA
Sbjct: 18  FGTRTIRFETGLLARQANGSALAYLDDDTTVFAATTASKAPKEHFDFFPLTVDVEERSYA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM  + + +  V+
Sbjct: 78  AGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFKKGMRNEVQVVATVMTINPDEAYDVL 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QDA 184
           ++ AAS A  L+GLPF GP+ G ++  I+GQ+V  PR  E +  +  + ++G       A
Sbjct: 138 AINAASMATSLAGLPFSGPIGGTRMALIDGQWVAFPRWSELKRATFSMAIAGRVVGDDVA 197

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE +A +             +E  V   +       + + EA SKL + C K     
Sbjct: 198 IMMVEAQAPEHADAVIKAGGAKPTEAEVAAGMEAAKPVIRTLCEAQSKLVEECGKPVGDF 257

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P   D  D     E + + I         I  K  R + +++L + +V   +        
Sbjct: 258 PFFPDYTDEQY--EAVEEKIGGRFAPILGIVAKAERDEALNELTESVVEELAEAFPEEEA 315

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
               +V      K +R  +L + VRMDGR    +R I+A+ G+L R HGS+LF RG+TQ 
Sbjct: 316 AIAAAVNAAF-KKTMRHHVLTEGVRMDGRTPVEIRTITAEAGVLPRVHGSALFQRGETQI 374

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL   + EQ +D+LS      ++ HYNF P +TGE  R+G+P RREIGHG LA  A
Sbjct: 375 LGVTTLNMLKMEQQLDNLSPATSRRYIHHYNFPPYSTGETGRVGSPKRREIGHGHLAEIA 434

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +   LP   +FPY +R VSE   S+GSSSM +VC S+L+L +AGVP+  PVAGIAMGLV 
Sbjct: 435 LESQLPGREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVS 494

Query: 469 ----DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
                   +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI   ++  AL QA
Sbjct: 495 ATIDGETKYCTLTDILGAEDALGDMDFKVAGTREYVTALQLDTKLDGIPAAVLDAALGQA 554

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +  R  IL+ +++ +     ++    PR+  + IP D+I  VIG  GK+I  I E TGA+
Sbjct: 555 RDARFAILDLITEAIDGP-DEMAATAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGAE 613

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I+DDGTV I ++     EAAR+ + +I    +PEV + + G VVK   FGAF+     
Sbjct: 614 ISIEDDGTVFIGATDGPSAEAARQAVNAIANPQMPEVGERFVGTVVKTTTFGAFISLAPG 673

Query: 643 RDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           RDGL+HISQ+      +RV    DV+  GD V V++ + D RGK+ L
Sbjct: 674 RDGLLHISQIRRIVGGKRVENVEDVLNVGDKVEVEIAEIDPRGKVSL 720


>gi|145344077|ref|XP_001416565.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576791|gb|ABO94858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 823

 Score =  618 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 284/695 (40%), Positives = 412/695 (59%), Gaps = 18/695 (2%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
                ++LETG+I  Q++GAV A+ GETV+  T    R       F PLTVNY ER  A 
Sbjct: 75  IGESEVRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFVPLTVNYAERFSAA 134

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+  GGY +R+    ENE L +R++DR IRP+  K +  ETQV+  +M  D E S   ++
Sbjct: 135 GRTSGGYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDAERSTDALA 194

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDED-QGSLDLFVSGTQDAVLM 187
           + AASAAL +S +P + PVVG +V  + G  + V+NP  ++  Q  LDL ++GT +AVLM
Sbjct: 195 ITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRLDLVLAGTDEAVLM 254

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQ 246
           +E   + L+ D +L AI  G        + I   A   A + ++       + ++E ++ 
Sbjct: 255 IEGFCDFLTTDEMLRAIEKGQEAVAKACKEIDAWAATVAPQKMMQKLIVQPEGVDEAVAA 314

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           +++++L+ +  +P K  R   I   +++ V     E  +     +++    I+++ +R V
Sbjct: 315 LVEDELKQAIVVPIKQERGAMIGAARERAVEALQDEFQA---SAVINACGKIESRALRDV 371

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  K  R DGR +  +R I+ + G+L RTHGSSLF RG+TQAI V TLG  +D Q  D +
Sbjct: 372 IRTKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDV 431

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +   FM+HY F P + GE  R G  SRREIGHG LA RA+ P+LP    FP+  ++ 
Sbjct: 432 EAGEDKRFMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCKLE 491

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK--------DGDDFIILSD 478
           S ITES+GSSSMATVC  +LAL+DAGVPI + VAGIAMGL+         D  + I+L+D
Sbjct: 492 STITESNGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLILGSEAAGGGDELEPIVLTD 551

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFKVAG   GITA QMD+K+ GI+ ++M  AL++A++G +HIL EM K 
Sbjct: 552 ILGSEDALGDMDFKVAGDKDGITAFQMDIKVEGITIDVMKTALEEAQKGLVHILGEMEKC 611

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNID-DDGTVKIA 596
                    ++ PR+  +A+P      VIG GG+ IR I+E+TG   ++++ +   V + 
Sbjct: 612 DPAPAGATSKYAPRIASIAVPEKYFGKVIGKGGETIRSIMEKTGAENIDVNKEKEMVFVT 671

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVV-KVMDFGAFVHFCGARDGLVHISQLSTE 655
             + A+++AA  MI  +   PEV KIY+G VV KV++FG FV +    +GLVHIS+L   
Sbjct: 672 GGADADLDAAIRMIEGMIVEPEVGKIYRGCVVKKVVEFGCFVEYLPGLEGLVHISELDVS 731

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           RV   SDV  EG  + VK++  D+RGK  LS K V
Sbjct: 732 RVPNVSDVTSEGAVMDVKIIAVDNRGKTSLSRKEV 766


>gi|329768891|ref|ZP_08260319.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
 gi|328837254|gb|EGF86891.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
          Length = 618

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 257/573 (44%), Positives = 380/573 (66%), Gaps = 8/573 (1%)

Query: 1   MF-DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           MF +      +WAG+ L +E G +ARQ++ AV+  YG+TVVL T V  +  KD  DFFPL
Sbjct: 1   MFQEKKVYTTKWAGKELTVEIGEMARQANAAVVVKYGDTVVLTTAVASKEAKD-VDFFPL 59

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
           TVNY+E+ YAVGKIPGG+LRRE RP     L +R+IDR IRPLF   ++NE QVI  V+ 
Sbjct: 60  TVNYEEKMYAVGKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLS 119

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            + +  P + +M+ +S +L +S +PF+GP+ G  V YI+G+Y++NP +++ ++  +DL V
Sbjct: 120 VEYDCDPVMAAMLGSSLSLSVSNIPFKGPIAGVTVGYIDGEYIINPNIEQLEKSEIDLKV 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           +GT DA+ MVE  A ++SE+++L+AI+FGH E K +I    ++ +   +E + ++ K   
Sbjct: 180 AGTSDAINMVEAGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIVEEIGQEKMEVELKVID 239

Query: 239 K-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVS---- 293
           + +  E+ ++   +++ +  I +K  R + I  +K+K+V+ F    S  +E +IV     
Sbjct: 240 ENIYNEVLELALSEMKSAISIKDKQERDEAISAVKEKVVAIFEERASEEDELDIVKEAKL 299

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             + I    VR  + + KVR DGR    +R +++++ +L RTHGS+LF RG TQ++ VVT
Sbjct: 300 SLDKIVKDEVRREITEDKVRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVT 359

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           LG   DEQ +D L+  +   FM+HYNF   + GEV    AP RREIGHG L  RA+  V+
Sbjct: 360 LGNLSDEQIIDDLTQEENKRFMLHYNFPAFSVGEVGFSRAPGRREIGHGALGERALAQVI 419

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
           P    FPYT+RIVSEI ES+GSSS AT+C  S+ALM AGVPI   VAGIAMGLVK  + +
Sbjct: 420 PSKEDFPYTIRIVSEILESNGSSSQATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHY 479

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI G+SE I+  +L+QA+ GRL IL+
Sbjct: 480 TILTDIQGMEDHLGDMDFKVAGTTDGITALQMDIKIDGLSEQILKESLEQARIGRLQILD 539

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
            M++ +S  R ++  + P+++I+ I P++++ +
Sbjct: 540 HMNETISAPREEVSTYAPKIKIIKIKPEKLKML 572


>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
 gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
          Length = 806

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 272/726 (37%), Positives = 409/726 (56%), Gaps = 55/726 (7%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
           H V I    R + LETG I RQ+ GAV  + GET++  TV       +  DF PL V+Y 
Sbjct: 68  HCVRIPVGDRQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYH 127

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ER  A G+  GG+ +RE +P ++E+ ISR++DR +RP+  K Y +E QV+  V+  D   
Sbjct: 128 ERYSAAGRTSGGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSFDGLH 187

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQD 183
            P  +++ AA AAL LS +P   PV G +V YING+YVLNP   E  + SLD+ V+GT D
Sbjct: 188 LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVTKSSLDMIVAGTSD 247

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLEE 242
            +LM+E   N LSED ++ A+  G    K + + + +  +   ++  ++ +    S LEE
Sbjct: 248 GLLMIEGYCNLLSEDELVKAVETGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEE 307

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-------------WNEG 289
            + +++ +DL ++  I  K  R   I  L+KK+ S  + E  +             W+E 
Sbjct: 308 RIKEIMGDDLYLALHISGKQPRAAVITALEKKVWSKLTEEGVALSKTREQLEYAHVWDED 367

Query: 290 EIVS-----------------------------VFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           EI                                F++  +K +++++  +KVR DGR   
Sbjct: 368 EIKDGEIDQGDVHITPTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGIS 427

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-NDFMMHYN 379
            VR IS    LL R HGS++F RG+TQA+V V LG     Q +D ++       F + Y 
Sbjct: 428 DVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYV 487

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F     GEV R+G  SRREIGHGRL  R++ P+ P    FPYT+R+ S ITES+GSSSMA
Sbjct: 488 FPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFPSK--FPYTVRVESTITESNGSSSMA 545

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLGHMDFKV 493
           +VCG+ LAL DAGVP+  P+AG+AMGL+ D  ++      +IL+DI G ED  G MD KV
Sbjct: 546 SVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKV 605

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           AG+  GITA QMD+K+ GI+ +I+  AL +AK  R HIL EM+        +L +    +
Sbjct: 606 AGSKDGITAFQMDLKVQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLI 665

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRS 612
           + + I  +++  V+G GGK +R I++ +G + V++  DG+++I      +++ A E IRS
Sbjct: 666 DFVKIGREKVNMVVGTGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRS 725

Query: 613 ITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           IT  P V  +Y+   VK +  FG F+     R+GL HIS+L+T R+++  + V  G+ + 
Sbjct: 726 ITTDPTVGTVYRNCPVKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLD 785

Query: 672 VKLLDF 677
           VK+++ 
Sbjct: 786 VKVIEV 791


>gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu
           str. Miyayama]
 gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu
           str. Miyayama]
          Length = 757

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 297/708 (41%), Positives = 428/708 (60%), Gaps = 19/708 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDF- 56
           MF++    +EW G+ L ++TG +ARQ+ GA   +YG TVVLA V   +     K   D  
Sbjct: 1   MFEIKESSMEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLS 60

Query: 57  -FPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII 115
              L  N+  ++YA+G+IP G+ +RE + +E E+L SR++DR++RPL  +   NE  ++ 
Sbjct: 61  GLALVTNFLAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVC 120

Query: 116 NVMQH-DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL 174
            ++ H + +  P + +++AASAAL LSG+PF GPV+G  VD    +   N  + E +G L
Sbjct: 121 KLLAHGNRKVLPEIPALIAASAALQLSGIPFSGPVIGVDVDMRGSEVTCN-EIRETEGGL 179

Query: 175 DLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           +LFV+ T+++V+MVE EA++ SE+ V++A+       KPV   I++  K       +   
Sbjct: 180 ELFVACTEESVVMVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVKPIGVL 239

Query: 235 KDFSKLEEEMSQMIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            D  +L E++       L       I  K  R  ++  +     +  S +   + E E++
Sbjct: 240 YDNKELCEKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSDD--GYAESEVL 297

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
              + ++ ++VR  +L++ +R DGR    +R IS  +  L  THGS+LF RG TQ++VV 
Sbjct: 298 FFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVA 357

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG+ +DEQ +D + G +R   ++HYNFLP A GEV  + AP RREIGHGRLA +A+  V
Sbjct: 358 TLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKAVKAV 417

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYTLR+VSEITESDGSSSMATVCGSSLALMD GVPI+K VAGIAMGL+ DG  
Sbjct: 418 LPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGVR 477

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +LSDISGDED LG MDFKVAGT +GI A+QMDMK+ GIS   +  AL QA  GRLHIL
Sbjct: 478 SAVLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDALNQALAGRLHIL 537

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M  V+++ R  L +  P++    I  D +  VIG GGK IRGI   T AK++ID +  
Sbjct: 538 EKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSAKIDIDQNNY 597

Query: 593 VKIASSSLAEIEAAREM-------IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           V I + +   +  A+           S     ++ ++Y G++V V+DFG FV     ++G
Sbjct: 598 VYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDFGLFVVLPNKQEG 657

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           LVHIS++S  RV        EG  V V++ D    GKIKL+M+ +D++
Sbjct: 658 LVHISEISKNRVNDIRADYTEGQAVTVRIKDIGSDGKIKLTMR-IDED 704


>gi|257068221|ref|YP_003154476.1| polynucleotide phosphorylase/polyadenylase [Brachybacterium faecium
           DSM 4810]
 gi|256559039|gb|ACU84886.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Brachybacterium faecium DSM 4810]
          Length = 753

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 275/715 (38%), Positives = 403/715 (56%), Gaps = 43/715 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+A+Q+ GAV     + T+V +        K+  DFFPLT++ +ER YA
Sbjct: 20  YGRREIRFETGRLAQQAAGAVAVYLDDDTMVFSATAVSNKPKEHFDFFPLTIDVEERMYA 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+IPG + RRE RP  + IL +R+ DR +RP F K  +NE QV++ VM +  + +  VV
Sbjct: 80  AGRIPGSFFRREGRPGTDAILAARLTDRPLRPAFVKGLRNEVQVVLTVMANGPDDAYDVV 139

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYI-----NGQYVLNPRLDE-DQGSLDLFVSGT-- 181
            +  ASA+  +SGLPF GP+   ++  +      GQ+V  P   + D+    + V+G   
Sbjct: 140 GINGASASTQISGLPFSGPIGAVRIALMPNSQGGGQWVAFPTFSQLDEAVFSMVVAGRIV 199

Query: 182 --QDAVLMVELEANQLSEDVVLD---------AIIFGHNECKPVIE----AISKLAKMCA 226
               A++MVE EA   S +++ +          +  G    K  I     A  +LA   A
Sbjct: 200 EDDVAIMMVEAEATDNSWNLIKEQGAIAPTESVVAEGIEAAKVFIRSLCVAQQELAATAA 259

Query: 227 KE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           K     P+ +D +D +   E +     E L     I  K  R ++ + L  ++    S E
Sbjct: 260 KPVREFPLFLDYQDDAY--EIVEAAATERLAEVMSIAAKTEREERTEQLLAEITEELSGE 317

Query: 283 --HSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
                  E E+   F  +  +VVR  +L + VR+DGR    +R +SA+V +L R HGS+L
Sbjct: 318 GKQLEDREKEVTGAFRALTKQVVRKKVLTEGVRIDGRGLRDIRALSAEVEVLPRVHGSAL 377

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQ + V TL   + EQ +DSL   +R  ++ HYNF P +TGE  R+G+P RRE+G
Sbjct: 378 FQRGETQIMGVSTLNMLKMEQQIDSLGPVERKRYIHHYNFPPYSTGETGRVGSPKRREVG 437

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PVA
Sbjct: 438 HGMLAERAIVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 497

Query: 461 GIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           GIAMGL+ D  +    +  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ G+  ++
Sbjct: 498 GIAMGLISDTIEGEIRYAALTDILGAEDAFGDMDFKVAGTGEFITAIQLDTKLDGLPASV 557

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL QA   RL IL  + + +     ++    PRV  + +P D+I  VIG  G++I  
Sbjct: 558 LTGALSQAHEARLAILGVLGEAIDAP-DEMSPNAPRVLAVTVPVDKIGAVIGPKGQMINQ 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFG 634
           I + TGA + I+DDGTV I ++     EAAR  + +I    VPEV + Y G VV+V+DFG
Sbjct: 617 IQDDTGADITIEDDGTVYIGATDGPSAEAARSAVNAIANPMVPEVGERYLGTVVRVVDFG 676

Query: 635 AFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           AF+     +DGL+H++QL      +RV    DV   G  + V++ + D RGKI L
Sbjct: 677 AFISLTPGKDGLLHVTQLRKLNGGKRVDNVEDVATVGQKIEVEIREIDARGKISL 731


>gi|28572501|ref|NP_789281.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
           TW08/27]
 gi|81628250|sp|Q820Y9|PNP_TROW8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28410633|emb|CAD67019.1| mRNA processing exonuclease [Tropheryma whipplei TW08/27]
          Length = 735

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 278/721 (38%), Positives = 412/721 (57%), Gaps = 48/721 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   GET++L++    +  K+  DFFPLTV+ +ER+YA
Sbjct: 13  FGTRTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYA 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG Y RRE RP+   IL  R+IDR +RP F+   +NE QVI+ V+          +
Sbjct: 73  AGKIPGSYFRREGRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSIAPGEFYEAL 132

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT------- 181
           ++ AASA+ ++SGLPF GP+ G ++  I+GQ+V  PR ++  G+  DL V+G        
Sbjct: 133 AINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRYEDLSGAVFDLTVAGRVFVNESG 192

Query: 182 --QDAVLMVELEANQLSEDVV---------LDAIIFGHNECKPVIEAISKLAKMCA---- 226
               A++MVE EA + + D++          + I  G    K  I  +  + +  A    
Sbjct: 193 KEDIAIMMVEAEATEPAWDLIHSHGAKKPNEEVIEEGIESAKVFIRTLCDIQRDLASKLS 252

Query: 227 ---KEPIVIDSKDFSKLEEEMSQMIKEDLRVSCF-IPEKYVRCKQI---DDLKKKMVSYF 279
               EP +      S +   +  ++K DL        +       +   D++K+K    F
Sbjct: 253 LSHTEPDLYPDYSDS-VHSFVEGLVKSDLEKVYRGNHDSGYAPNALSASDEIKQKAYDAF 311

Query: 280 -----SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
                S      +  +    ++ +   VVRT +L+   RMDGR    +R + A+V ++ R
Sbjct: 312 HDAVLSGRFDQDSLSQFPHAYKAVLKDVVRTCVLEGFARMDGRGLSDIRPLDAEVQVVPR 371

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
            HGS++F RG+TQ + V TL   + EQ +DSL+      ++ HYNF P +TGEV R+G+P
Sbjct: 372 VHGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSKRYIHHYNFPPYSTGEVGRVGSP 431

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RREIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP
Sbjct: 432 KRREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVP 491

Query: 455 ISKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           +  PVAGIAMGL+    D    ++ L+DISG ED LG MDFKVAGT   ITA+Q+D K+ 
Sbjct: 492 LRAPVAGIAMGLISGRVDGEMRYVTLTDISGSEDALGDMDFKVAGTSDFITALQLDTKLD 551

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI  +++  AL  A+  RL IL+ +++V+     Q+ E+ PRV  + IP  +I  +IG  
Sbjct: 552 GIPAHVLSEALAHARSARLAILDVLTRVIDSP-DQMSEYAPRVVRVKIPVQKIGELIGPK 610

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVV 628
           GKVI  I ++TGA+++I+DDGTV I SS     E A  M+ SI +   P V   + G VV
Sbjct: 611 GKVINSIQDETGAEISIEDDGTVYIGSSQADSSEKAVAMVNSIVNPVEPCVGSQFLGTVV 670

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           K M FG+F+     +DGL+HIS++        +    +V+  G  V V++   DDRGK+ 
Sbjct: 671 KNMPFGSFISLVPGKDGLLHISEIRKMVDGRHLESVDEVLSVGQKVLVEVSKIDDRGKLC 730

Query: 685 L 685
           L
Sbjct: 731 L 731


>gi|118087502|ref|XP_419282.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 728

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 235/685 (34%), Positives = 375/685 (54%), Gaps = 28/685 (4%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           L   G+T V+ T V        Q F PL V+Y+++  A G+IP  YLRRE   T+ EIL 
Sbjct: 17  LIQLGDTAVMVTAVSKTKPSASQ-FMPLVVDYRQKAAAAGRIPTNYLRRELGTTDKEILT 75

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           SR+IDRSIRPLF   Y  +TQ++ N++  D  + P V+++  ASAAL LS +P+ GPV  
Sbjct: 76  SRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAINGASAALALSDIPWNGPVGA 135

Query: 152 AQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHN 209
            +V  ++G+ V+NP   +   S L+L V+   Q+ V+M+E  A  + +     AI  G  
Sbjct: 136 VRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEATAENILQQDFCHAIKVGVK 195

Query: 210 ECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQMIKEDLRV--SCFIPEKYVRC 265
           + + +I+ I +L K        +     +  ++ E   ++    +    + F  +K  R 
Sbjct: 196 QTQHIIQGIQQLVKERGVVKRTVQKLFVAPEEIVECAKKLAFNKIYAVFTDFSHDKISRD 255

Query: 266 KQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDI 325
           + I+ ++ +       +       EI+  F  +   + R ++L++  R DGRD  ++RDI
Sbjct: 256 EAINKIRLETEEQLKEKFPEAEPYEIMESFNAVSKVIFRNLILNEYRRCDGRDLTSLRDI 315

Query: 326 SAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD----SLSGTQRNDFMMHYNFL 381
             +V + +  HGS+LF RG TQ +  VT  + E     D    ++SG +  +FM+HY F 
Sbjct: 316 KCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSGIKDKNFMLHYEFP 375

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P AT E+ ++   +RRE+GHG LA RA+ PV+P    FP+T+R+ SE+ ES+GSSSMA+ 
Sbjct: 376 PYATNEIGKVTGVNRRELGHGALAERALKPVIP--QDFPFTIRVTSEVLESNGSSSMASA 433

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLV-------KDGDDFIILSDISGDEDHLGHMDFKVA 494
           CG SLALMDAGVP+S  VAG+A+GLV       +D +D+ +L+DI G ED+ G MDFK+A
Sbjct: 434 CGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRDIEDYRLLTDILGIEDYYGDMDFKMA 493

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           GT  G+TA+Q+D+K+ GI   I++ A+QQA   +  IL  M++ L++ R    E  P VE
Sbjct: 494 GTSKGVTALQVDLKLPGIPIKIIMEAIQQATAAKREILQIMNETLAKPRPNRKESGPVVE 553

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            + +P  +    +G G   ++ +  +TG  ++  D+ T  + + + + +  ARE I  + 
Sbjct: 554 TIHVPLSKRLRFLGPGAYNLKKLQAKTGVTLSQLDEETYSMFAPTPSAMHEAREFIGELC 613

Query: 615 DV-----PEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEG 667
                   E   IY   + ++ D G  V         L+H SQL   ++   S + ++ G
Sbjct: 614 KDDQEVNLEFGAIYTATITEIRDSGVMVKLYPNMTPVLLHNSQLDQRKIKHPSALGLEVG 673

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691
             + VK    D   G+++LS KV+ 
Sbjct: 674 QEIQVKYFGRDPTDGRMRLSRKVLQ 698



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 103/263 (39%), Gaps = 42/263 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD-----------RSLKDGQDFFPLTVN 62
           R +K E     +   G+ L   G+T VL TV +D            +   G       ++
Sbjct: 313 RDIKCEVNMF-KMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSGIKDKNFMLH 371

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+   YA  +I      + +     E+    + +R+++P+  + +    +V   V++ + 
Sbjct: 372 YEFPPYATNEIG-----KVTGVNRRELGHGALAERALKPVIPQDFPFTIRVTSEVLESNG 426

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR---------------L 167
            SS  + S    S ALM +G+P    V G  V  +      +P                +
Sbjct: 427 SSS--MASACGGSLALMDAGVPVSSAVAGVAVGLVTK---YDPEGRDIEDYRLLTDILGI 481

Query: 168 DEDQGSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK-LAK- 223
           ++  G +D  ++GT   V  ++++     +   ++++AI       + +++ +++ LAK 
Sbjct: 482 EDYYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQQATAAKREILQIMNETLAKP 541

Query: 224 -MCAKEPIVIDSKDFSKLEEEMS 245
               KE   +       L + + 
Sbjct: 542 RPNRKESGPVVETIHVPLSKRLR 564


>gi|28493388|ref|NP_787549.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
           str. Twist]
 gi|81437795|sp|Q83G94|PNP_TROWT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28476429|gb|AAO44518.1| polyribonucleotide nucleotidyltransferase [Tropheryma whipplei str.
           Twist]
          Length = 738

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 277/720 (38%), Positives = 412/720 (57%), Gaps = 46/720 (6%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           +  R ++ ETGR+ARQ+ G+V+A   GET++L++    +  K+  DFFPLTV+ +ER+YA
Sbjct: 16  FGTRTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYA 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            GKIPG Y RRE RP+   IL  R+IDR +RP F+   +NE QVI+ V+          +
Sbjct: 76  AGKIPGSYFRREGRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSIAPGEFYEAL 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT------- 181
           ++ AASA+ ++SGLPF GP+ G ++  I+GQ+V  PR ++  G+  DL V+G        
Sbjct: 136 AINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRYEDLSGAVFDLTVAGRVFVNESG 195

Query: 182 --QDAVLMVELEANQ-------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
               A++MVE EA +              +E+V+ + I       + + +    LA   +
Sbjct: 196 KEDIAIMMVEAEATESAWDLIHSHGAKKPNEEVIEEGIESAKVFIRTLCDIQRDLASKLS 255

Query: 227 KEPIVID-SKDFSK-LEEEMSQMIKEDLRVSCF-IPEKYVRCKQI---DDLKKKMVSYF- 279
                 D   D+S  +   +  ++K DL        +       +   D++K+K    F 
Sbjct: 256 LSHTEPDLYPDYSDSVHSFVEGLVKSDLEKVYRGNHDSGYAPNALSASDEIKQKAYDAFH 315

Query: 280 ----SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
               S      +  +    ++ +   VVRT +L+   RMDGR    +R + A+V ++ R 
Sbjct: 316 DAVLSGRFDQDSLSQFPHAYKAVLKDVVRTCVLEGFARMDGRGLSDIRPLDAEVQVVPRV 375

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
           HGS++F RG+TQ + V TL   + EQ +DSL+      ++ HYNF P +TGEV R+G+P 
Sbjct: 376 HGSAVFQRGETQVLGVTTLNMLKMEQQIDSLAPIVSKRYIHHYNFPPYSTGEVGRVGSPK 435

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+
Sbjct: 436 RREIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPL 495

Query: 456 SKPVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
             PVAGIAMGL+    D    ++ L+DISG ED LG MDFKVAGT   ITA+Q+D K+ G
Sbjct: 496 RAPVAGIAMGLISGRVDGEMRYVTLTDISGSEDALGDMDFKVAGTSDFITALQLDTKLDG 555

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++  AL  A+  RL IL+ +++V+     Q+ E+ PRV  + IP  +I  +IG  G
Sbjct: 556 IPAHVLSEALAHARSARLAILDVLTRVIDSP-DQMSEYAPRVVRVKIPVQKIGELIGPKG 614

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVK 629
           KVI  I ++TGA+++I+DDGTV I SS     E A  M+ SI +   P V   + G VVK
Sbjct: 615 KVINSIQDETGAEISIEDDGTVYIGSSQADSSEKAVAMVNSIVNPVEPCVGSQFLGTVVK 674

Query: 630 VMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            M FG+F+     +DGL+HIS++        +    +V+  G  V V++   DDRGK+ L
Sbjct: 675 NMPFGSFISLVPGKDGLLHISEIRKMVDGRHLESVDEVLSVGQKVLVEVSKIDDRGKLCL 734


>gi|312380418|gb|EFR26416.1| hypothetical protein AND_07550 [Anopheles darlingi]
          Length = 738

 Score =  614 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 244/704 (34%), Positives = 388/704 (55%), Gaps = 29/704 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +++ +G+ AR +DG  + T G+T V+ T V  R       F PL V+Y++++ A G+I
Sbjct: 7   RVVRISSGKYARFADGCAVVTIGDTAVMVTAVA-RQKSQNTSFLPLVVDYRQKSAAAGRI 65

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRRE  P+E EIL +R++DRSIRPLF   ++ +TQ++ N++  D  + P V ++  
Sbjct: 66  PTNFLRRELGPSEKEILSARLVDRSIRPLFPADFRLDTQIVCNMLAIDSSNPPDVQAING 125

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ-DAVLMVELE 191
           ASAAL LS +P+ GPV   ++  ++ + ++NP   E Q  +LDL V+ T+ + V+M+E  
Sbjct: 126 ASAALALSDIPWNGPVGAVRLGLVDNEVIVNPTRREMQLSALDLVVTATRQNLVVMLEGR 185

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIK 249
            N ++E+ +  AI  G  E + +I  I +L K   K    I+       ++   +  M +
Sbjct: 186 GNVVNENEIRMAIKRGTKEAQLIINGIERLQKTHGKAKRPIEPSPTVDEEIAGAVRTMAE 245

Query: 250 EDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
             LR     F  +K+ R + +   +   +    S + + + G I   F      V R ++
Sbjct: 246 MRLREIFRDFTHDKFSRDQAVSKTRTDTIDKVWSSYPTADPGLISEAFNKFTRSVFREML 305

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L+  VR DGR  + +R IS  V L +  HGS+LF RG TQ    V L + E    +D ++
Sbjct: 306 LEDGVRCDGRGLDDLRPISCSVNLHKPLHGSALFQRGQTQVFSTVALDSPESALRLDPVT 365

Query: 368 ----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
               G +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P  A+ P+T+
Sbjct: 366 SLDAGMKSKNFFLHYEFPPYATGETGKIGPIGRREIGHGALAEKGLVPIIP--AEHPFTI 423

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DFII 475
           R+ SE+ ES+GSSSMATVC  S+ALMDAGVP+++  AG+A+GLV   +        D+ I
Sbjct: 424 RLTSEVLESNGSSSMATVCAGSMALMDAGVPVTEAAAGVAIGLVTKYENNDTKHLLDYRI 483

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSD+ G ED++G MD KVAGT  GITA+Q D+KI GI   +++ ALQ++   R  IL+ M
Sbjct: 484 LSDLLGIEDYMGDMDMKVAGTRRGITAIQADLKIPGIPLKVVMEALQKSMEARFKILDIM 543

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              +  +R    +  P  + + I P Q   ++G GG  +R +  +TG ++  +D+ + +I
Sbjct: 544 DGTIGATRTIKKDCWPVTDRLVIEPSQRSRLLGPGGVNLRRLYLETGVQLTQEDETSFRI 603

Query: 596 ASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHI 649
            + S A +  A+E +            E   IY  ++V++ D G  V         L+H 
Sbjct: 604 FAPSEAAMHEAKEHLEELLKTEKIPDLEFGAIYTAKIVELRDTGVMVTLYPSMPPTLLHN 663

Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           SQL   ++A  S + +  G  + VK    D   G ++LS KV+ 
Sbjct: 664 SQLDQRKIAHPSALGLPVGSEIQVKYFGRDPVSGFMRLSRKVLQ 707


>gi|119112780|ref|XP_318517.3| AGAP010791-PA [Anopheles gambiae str. PEST]
 gi|116118616|gb|EAA13718.3| AGAP010791-PA [Anopheles gambiae str. PEST]
          Length = 737

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 243/704 (34%), Positives = 390/704 (55%), Gaps = 29/704 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R LK+ +G+ AR +DG  + T G+T V+ T V  +  ++   F PL V+Y++++ A G+I
Sbjct: 1   RILKISSGKYARFADGCSVVTIGDTAVMVTAVAKQKSQNAS-FLPLVVDYRQKSAAAGRI 59

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRRE  P+E EIL +R++DRSIRPLF   ++ +TQ++ N++  D  + P V ++  
Sbjct: 60  PTNFLRRELGPSEKEILSARLVDRSIRPLFPAEFRYDTQIVCNMLAIDSANPPDVQAING 119

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ-DAVLMVELE 191
           ASAAL LS +P+ GPV   +V  ++ + ++NP   E Q  SLDL V+ T+ + V+M+E  
Sbjct: 120 ASAALALSDIPWNGPVGAVRVGLVDNEAIINPTRKEMQLSSLDLVVTATRQNLVVMLEGR 179

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQMIK 249
            N ++E+ +  AI  G  E + +I  I +L KM  K    ++       +++  +  M +
Sbjct: 180 GNVVNENELRMAIKKGTKEAQLIINGIERLQKMYGKPKRALEPLPAVDGEIQNAVQTMSE 239

Query: 250 EDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
             LR     +  +K+ R + +   +   +    S   + + G I   F      V R ++
Sbjct: 240 MRLREIFRDYSHDKFSRDQAVSKTRTDTIDKVWSSFPAADPGVISETFNKFVKGVFREML 299

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL- 366
           L++K R DGR  + +R IS  V L +  HGS+LF RG TQ    V L + E    +D + 
Sbjct: 300 LEEKRRCDGRGLDDLRKISCSVNLHKPLHGSALFQRGQTQVFCTVALDSPESALRLDPIA 359

Query: 367 ---SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              SG +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P     P+T+
Sbjct: 360 SLDSGMRSKNFFLHYEFPPYATGETGKIGPIGRREIGHGALAEKGLVPIIPNE--HPFTV 417

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DFII 475
           R+ SE+ ES+GSSSMATVC  S+ALMDAGVP+ +  AG+A+GL+   +        D+ I
Sbjct: 418 RLTSEVLESNGSSSMATVCAGSMALMDAGVPVQEAAAGVAIGLITKYENNDTKHLQDYCI 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+D+ G ED++G MD KVAGT  G+TA+Q D+K+ GI   +++ ALQ++   R  IL+ M
Sbjct: 478 LTDLLGIEDYMGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMEALQKSMEARFKILDLM 537

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +  SR    +  P  + + I   Q   ++G GG  +R +  +TG ++  DD+ + +I
Sbjct: 538 DETIGASRTVRKDCWPVTDRLVIEAHQRAKLLGPGGTNLRRLYLETGVQLTPDDETSFRI 597

Query: 596 ASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHI 649
            + S A +  A+E +            E   IY  ++V++ D G  V         L+H 
Sbjct: 598 FAPSEAAMHEAKEYLENLLKAEKIPDLEFGAIYTARIVELRDTGVMVTLYPSMPPTLLHN 657

Query: 650 SQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 658 SQLDQRKIAHPSALGLQVGAEIQVKYFGRDPVSGYMRLSRKVLQ 701


>gi|197294708|ref|YP_001799249.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
           australiense]
 gi|226702674|sp|B1VAN5|PNP_PHYAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171854035|emb|CAM12008.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
           australiense]
          Length = 710

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 284/694 (40%), Positives = 421/694 (60%), Gaps = 32/694 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D +VL  + +TVVL T V+    K+  DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDPSVLIRFQDTVVLTTTVFSNK-KNNFDFLPLTVIYQEKFYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE R T++EIL SR+IDRS+RPLF K ++ E QVI  V+  + +    + S++ +S
Sbjct: 74  SFLRREGRSTDHEILSSRLIDRSLRPLFPKEFRQEIQVINTVLSSNPDFKSEIASILGSS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            +L++S +PF  PV G  V YI  Q+V+NP   +   S L L V+GT+  V+M+E  A++
Sbjct: 134 LSLLISEIPFFEPVAGVYVAYIQNQFVINPNAQQLTNSPLHLLVAGTKKNVVMIEAHASE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIKEDLR 253
           +SE++ L+AI+F H   K +      + K   +   +ID   +   LE+E ++   E  R
Sbjct: 194 VSEEMFLEAIVFAHEYIKKLCLFQEDVQKKVGQTKKLIDLDAELQSLEKEFNEQYHEQTR 253

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSY---------------FSSEHSSWNEGEIVSVFEDI 298
                  +  +   +   KKK+++                F  E        I ++F+ +
Sbjct: 254 TLVANVFEQDQKNDLQVFKKKILAKAQQKAFVKTIDQITFFDVEEQKNYLLLIENLFQKL 313

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + +R  ++  K R D R  E VR++ +Q+ LL R HGS+LF RG TQ++ VVTLGT  
Sbjct: 314 FNQEMRNYIIKNKKRPDKRTLEEVRNLDSQIDLLPRPHGSALFTRGQTQSLAVVTLGTLS 373

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           + + +D LSG     FM+HYNF P A G + R  APSRREIGHG LA +AI P+LP+   
Sbjct: 374 ESKIIDDLSGESNKRFMLHYNFPPFAVGSIGRYAAPSRREIGHGNLAEKAILPLLPEEND 433

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIIL 476
           FPY +R+VSEI ES+GSSS ATVC +S++LM AGVP+ + V+GIAMGL  D   ++++IL
Sbjct: 434 FPYAIRVVSEILESNGSSSQATVCATSMSLMAAGVPLKRAVSGIAMGLFMDSKTNEYVIL 493

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDI G EDH+G MD K+AG+D GITA+QMD+KI GIS+ I+  A  QAK+GRLHIL  M+
Sbjct: 494 SDIQGLEDHIGDMDLKIAGSDKGITALQMDLKIEGISQAILKQAFFQAKKGRLHILEHMN 553

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTVKI 595
           K ++  R ++ ++ P+V++  I P++IR+VIG  GK+I  I+E   G K++I+ DG + +
Sbjct: 554 KTIASPRKEMSQYAPKVQMFQIKPEKIRDVIGSAGKIINQIIENHDGVKIDIEQDGRIFV 613

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLVHI 649
             S+L  ++ A   I+++    EVN IY   + + ++       GAF     + +GL+  
Sbjct: 614 MHSNLETVKQAILFIKNLIQDAEVNSIYHAHISRFLNDKAGNILGAFAQVSPSIEGLIRF 673

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S     +  K +DVVK GD V VK +  ++RG+I
Sbjct: 674 S-----KAKKENDVVKIGDKVLVKCVKINERGRI 702


>gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Macaca mulatta]
          Length = 754

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 242/721 (33%), Positives = 397/721 (55%), Gaps = 37/721 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++  A 
Sbjct: 16  FWQRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAA 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P V++
Sbjct: 75  GRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDVLA 134

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMV 188
           +  AS AL LS +P+ GPV   ++  I+G+YV+NP   E   S L+L V+G  +  ++M+
Sbjct: 135 INGASVALSLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVML 194

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS--- 245
           E  A  + +     AI  G    + +I+ I +L K           K F+ L E +    
Sbjct: 195 EASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRT-PQKLFTPLPEIVKHTH 253

Query: 246 QMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           ++  E L    + +  EK  R + I+ ++         +    +  EI+  F  +  +V 
Sbjct: 254 KLAMERLYAVFTDYEHEKVSRDEAINKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVF 313

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----D 359
           R+++L++  R DGRD  ++R+IS +V   +  HGS+LF RG TQ +  VT  + E     
Sbjct: 314 RSIILNEYKRCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKS 373

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P    F
Sbjct: 374 DQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--KDF 431

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------D 472
           P+T+R+ SE+ ES+GSSSMA+ CG SLALMD+GVPIS  VAG+A+GLV   D       D
Sbjct: 432 PFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIED 491

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +  IL
Sbjct: 492 YRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEIL 551

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D+ T
Sbjct: 552 QIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEET 611

Query: 593 VKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF---CGARD 644
             + + + + +  AR+ I  I         E   +Y   + ++   G  +     C + +
Sbjct: 612 FSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRKLGILIKLKKMCTSVE 671

Query: 645 GLVHISQLSTE----RVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
              +   +       ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +
Sbjct: 672 LRNYAQLIDWHGFFFQIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTV 730

Query: 699 V 699
           V
Sbjct: 731 V 731


>gi|269977469|ref|ZP_06184441.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
           28-1]
 gi|306819115|ref|ZP_07452829.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|269934385|gb|EEZ90947.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
           28-1]
 gi|304648091|gb|EFM45402.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 794

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 274/711 (38%), Positives = 408/711 (57%), Gaps = 38/711 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 17  KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM    + +  V
Sbjct: 77  AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QD 183
           V++ A+S +  L+GLPF GP+ G ++  I+GQ+V  P   + +  + ++ V+G       
Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196

Query: 184 AVLMVELEANQLSEDVV--------LDAIIFGHNECKPVIEAISKLAKMCAKE------- 228
           A++MVE      + +++         + +       KPVI  + +     A +       
Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSS 285
            P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E     
Sbjct: 257 YPLFPDYEDN--HFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F+ ++ K+VR  +L +  R+DGR  + +R ++A+V +L R HGS+LF RG+
Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIGHG LA
Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
             A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+AGIAMG
Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494

Query: 466 LVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           L+ +  +     F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++V A
Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTKLDGIPSDVLVGA 554

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA+  RL IL+ M   +     +L    PR+  + IP D+I  VIG  GK+I  I E 
Sbjct: 555 LGQARDARLKILDVMHAAIDTP-DELAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQED 613

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I + +    EAAR+ + +I    +PEV + + G VVK   FGAF+ 
Sbjct: 614 TGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFGAFIS 673

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
               +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L
Sbjct: 674 LTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSL 724


>gi|227875834|ref|ZP_03993960.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
           ATCC 35243]
 gi|227843582|gb|EEJ53765.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
           ATCC 35243]
          Length = 794

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 274/711 (38%), Positives = 408/711 (57%), Gaps = 38/711 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 17  KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM    + +  V
Sbjct: 77  AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QD 183
           V++ A+S +  L+GLPF GP+ G ++  I+GQ+V  P   + +  + ++ V+G       
Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196

Query: 184 AVLMVELEANQLSEDVV--------LDAIIFGHNECKPVIEAISKLAKMCAKE------- 228
           A++MVE      + +++         + +       KPVI  + +     A +       
Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSS 285
            P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E     
Sbjct: 257 YPLFPDYEDN--HFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F+ ++ K+VR  +L +  R+DGR  + +R ++A+V +L R HGS+LF RG+
Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIGHG LA
Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
             A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+AGIAMG
Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494

Query: 466 LVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           L+ +  +     F  L+DI G ED  G MDFKVAGT   ITA+Q+D K+ GI  +++V A
Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTKLDGIPSDVLVGA 554

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA+  RL IL+ M   +     +L    PR+  + IP D+I  VIG  GK+I  I E 
Sbjct: 555 LGQARDARLKILDVMHAAIDTP-DELAPTAPRIITVNIPVDKIGEVIGPKGKMINQIQED 613

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGAFVH 638
           TGA++ I+DDGTV I + +    EAAR+ + +I    +PEV + + G VVK   FGAF+ 
Sbjct: 614 TGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVKTTTFGAFIS 673

Query: 639 FCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
               +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L
Sbjct: 674 LTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSL 724


>gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus]
          Length = 748

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 240/710 (33%), Positives = 387/710 (54%), Gaps = 29/710 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 13  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 71

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 72  AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 131

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 132 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 191

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE--E 242
           ++M+E  A  + +     AI  G    + +I+ I +L K             +S     E
Sbjct: 192 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPAEDIYSFCRDCE 251

Query: 243 EMSQMIKEDLRVSCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L     I    K+        ++    S +  +    ++ EI+  F  +  
Sbjct: 252 VTKXIAMEKLYAGFQIMNMIKFX-GMNCYQIRLDPRSIYKEKFPEVDQFEIIESFNIVAK 310

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 311 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 370

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 371 IKSDQIITAVNGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 428

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG S ALMDAGVPIS  VAG+A+GLV        +
Sbjct: 429 KDFPFTIRVTSEVLESNGSSSMASACGGSXALMDAGVPISSAVAGVAVGLVTKTNPEKGE 488

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   + 
Sbjct: 489 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKK 548

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D
Sbjct: 549 EILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVD 608

Query: 590 DGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           + T  I + +   +  AR+ I  I         E   +Y   + ++ D G  V       
Sbjct: 609 EETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 668

Query: 644 DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 669 AVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 718


>gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
 gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
          Length = 710

 Score =  611 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 265/690 (38%), Positives = 432/690 (62%), Gaps = 13/690 (1%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETG +A Q++G+ +     T ++ATVV     K G +F PL ++Y+E+  A G
Sbjct: 14  DGRTLSIETGYLACQANGSAVVRMANTSLIATVVVSTEEKKGVNFLPLNIDYREKYSAGG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP++ EIL  R++DR +RPLF K +  E Q++I+++ +D+   P  ++ 
Sbjct: 74  KIPGGFIKREGRPSDEEILTMRLVDRLLRPLFPKIFYKEIQIMISLLSYDINVLPDGLAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           + AS A+ LSG+PF+GPV   ++  +   +++NP +++  +  +DL V G+ +++LMVE 
Sbjct: 134 LVASTAVYLSGIPFKGPVSAVRIIRMKNLFIINPGIEDVKKSDIDLIVGGSINSILMVEG 193

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKL---AKMCAKEPIVIDSKDFSKLEEEMSQM 247
           E  ++SE  ++  I   H   K  I+A   L    K  +K    I + +F  L+E+++ +
Sbjct: 194 EMKEVSEKEIMKIIKIAHFYIKRQIKAQINLLKKIKKKSKIDFNIKNNNFFYLKEKLNFL 253

Query: 248 IKEDLR-VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
             E +  +     +K +R K+I+ L   +   F ++H   +E EI  +F +I+ K++R +
Sbjct: 254 FFEKIYNIYKKFYKKKIRLKKINILLNNIKKIFFNDHIIIHENEIDIIFFEIKKKIIREI 313

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  + +R+DGR  + +R+IS++V  L   HGS++F RG+TQA+  VTLG+  D   +D++
Sbjct: 314 ICKENIRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNV 373

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
               +  F +HYNF P +TGE+  +   SRREIGHG LA+RA+  ++P     PYT+R+V
Sbjct: 374 IIQDKQKFYLHYNFPPFSTGEIKLLKGVSRREIGHGNLAQRALKNIIPFDN--PYTIRVV 431

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDED 484
           S++ ES+GSSSMATVC S+LALMDAG+PI +PV+GI+MGL+ +    + +ILSDI GDED
Sbjct: 432 SDVLESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIFNKFTGEALILSDILGDED 491

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           ++G MDFK+ GT  G+TA QMD+KI GIS +I++  + +AK+G + I+N M   L+  R+
Sbjct: 492 NIGDMDFKITGTKYGMTACQMDLKIYGISYDILLKTILKAKKGIIFIINNMLTTLNSPRI 551

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLA 601
            L    P++    IP   I  VIG GGK+I+ I   T   + I++    G ++I   +  
Sbjct: 552 SLKPTAPKIYTFNIPKTFIGAVIGPGGKIIQEIQYSTETNLKIEEKENLGKIEILGKNYN 611

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +I+ A E I+ I   P++ KIYK +V  +  FG FV      +GL+HIS++S +++    
Sbjct: 612 KIKDAIEKIKYIVFFPKIGKIYKAKVKYIKPFGVFVELSKGIEGLLHISEISWKKLTNLE 671

Query: 662 DVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           + +K G+ + VK L  +++ GKIKLS K++
Sbjct: 672 NYLKIGNFINVKYLGKNNKNGKIKLSHKIL 701


>gi|148273228|ref|YP_001222789.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|187610254|sp|A5CSN9|PNP_CLAM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147831158|emb|CAN02110.1| putative polyribonucleotide nucleotidyltransferase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 757

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/718 (37%), Positives = 406/718 (56%), Gaps = 45/718 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ E GR+A+Q+ GAV A    +T++L+     +  KD  DFFPLT++ +ER+Y
Sbjct: 17  KYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKDNFDFFPLTIDVEERSY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE QV+I V+    +     
Sbjct: 77  AAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDS 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT------ 181
           +++ AASA+ MLSG+PF GP+ G ++  I  Q+V+ P+  +  +   D+ V+G       
Sbjct: 137 LAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDSE 196

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLA 222
                A++MVE EA + + D++           +  G    KP I+ +         + A
Sbjct: 197 GNEDVAIMMVEAEATEGAWDLIQGGATKPDEAIVAQGLEAAKPFIQQLVAAQASLAQQAA 256

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS- 281
           K     P+ +     +   + +S +  ++L       +K  R    D LK +     ++ 
Sbjct: 257 KPTVDYPVFLPYAQETY--DAVSALALDELGTVYQTADKIERQDADDALKTRTKEAVAAK 314

Query: 282 ----EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               E       E  + ++ +   VVR  +L   VRMDGR    +R + A+V ++ R HG
Sbjct: 315 VEAGELPQSALTEFSAAYKSVTKTVVRGRILRDGVRMDGRGLADIRPLDAEVQVIPRVHG 374

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S++F RG+TQ + V TL   + EQ +DSLS   +  ++ HYNF P +TGE  R+G+P RR
Sbjct: 375 SAIFQRGETQILGVTTLNMLKMEQQIDSLSPITKKRYLHHYNFPPYSTGETGRVGSPKRR 434

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  
Sbjct: 435 EIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRA 494

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 495 PVAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIP 554

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  AL+QAK  R  IL  +++ +     ++    PRV  + IP D+I  +IG  GK 
Sbjct: 555 TSVLDGALKQAKEARTAILGVLNQAIDGP-DEMAPTAPRVISVNIPVDKIGELIGPKGKT 613

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVM 631
           I  I ++TGA ++I++DGTV I +      +AAR  + +I +   PEV + + G VVK+ 
Sbjct: 614 INAIQDETGADISIEEDGTVYIGAVDGPSADAARAQVNAIANPTNPEVGESFLGTVVKIA 673

Query: 632 DFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRGK+ L
Sbjct: 674 TFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEITKIDDRGKLSL 731


>gi|88855410|ref|ZP_01130074.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
           PHSC20C1]
 gi|88815317|gb|EAR25175.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
           PHSC20C1]
          Length = 749

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 273/716 (38%), Positives = 413/716 (57%), Gaps = 41/716 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETGR+A+Q+ GAV A   E T++L+     +  ++G DFFPLTV+ +ER+Y
Sbjct: 17  KFGKRTVRFETGRLAQQAQGAVAAYLDEETMILSATSAGKHPREGFDFFPLTVDVEERSY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL+ R+IDR +RP F +  +NE Q++I V+    +     
Sbjct: 77  AAGKIPGSFFRREGRPSTEAILVCRLIDRPMRPTFVEGLRNEVQIVITVLSIAPDEFYDA 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT------ 181
           +S+ AAS +  +SGLPF GP+ G ++  IN Q+V  P+  +      DL V+G       
Sbjct: 137 LSINAASLSTQISGLPFYGPIAGIRLALINDQWVAFPKHSQLADAVFDLTVAGRMVTNDN 196

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPV----IEAISKLAKMCA 226
                A++MVE EA + S +++           +  G    KP     ++A  ++A   A
Sbjct: 197 GEEDIAIMMVEAEATENSWELIKAGATKPDEAVVAQGLEASKPFLKQLVKAQLEVANKAA 256

Query: 227 KEPIVID--SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF----- 279
           K             +    +S++ + +LR    I +K  R    D+LK ++ +       
Sbjct: 257 KPVAEFQLFPPYSDQAYNAVSEIAEAELRDVYKIADKIQRQTADDELKARVKAEVQSKVD 316

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           + E S+   G +   ++ +  KV+R  +L + +R+DGR    +R + A+V ++ R HGS+
Sbjct: 317 AEELSADVLGMVGGAYKAVSKKVMRQRVLTEGIRIDGRGLSDIRALDAEVEVIPRVHGSA 376

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI 399
           +F RG+TQ + V TL   + EQ +DSL+   +  +M HYNF P +TGE  R+G+P RREI
Sbjct: 377 IFQRGETQILGVTTLNMLKMEQQIDSLAPVTKKRYMHHYNFPPYSTGETGRVGSPKRREI 436

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
           GHG LA RAI PVLP   +FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  PV
Sbjct: 437 GHGFLAERAIAPVLPPREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPV 496

Query: 460 AGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           AGIAMGL+ D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ G+  +
Sbjct: 497 AGIAMGLISDEVDGVTRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLAGLPSS 556

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  AL+QAK  R  IL+ ++  +     ++    PRV  + IP D+I  +IG  GK I 
Sbjct: 557 VLDGALKQAKEARTAILSVLNAAIDAP-DEMAPTAPRVISVQIPIDKIGELIGPKGKNIN 615

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVMDF 633
            I + TGA ++I+DDGTV I +      EAAR  + +I +   PEV + + G VVK+  F
Sbjct: 616 QIQDDTGADISIEDDGTVYIGAVDGPSAEAARAAVNAIANPLNPEVGERFLGTVVKIATF 675

Query: 634 GAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           GAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRGK+ L
Sbjct: 676 GAFVSLTPGKDGLLHISEVRKLAGGKRVENVEDVLAVGQKIQVEITKIDDRGKLSL 731


>gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group]
          Length = 941

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 257/724 (35%), Positives = 409/724 (56%), Gaps = 64/724 (8%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+YQE+ YA G IP  Y+RRE 
Sbjct: 1   MARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQEKQYAQGVIPTTYMRREG 60

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
            P E E+L  R+IDR IRPLF   + +E Q+++NV+  D +  P V++  A+SAALMLS 
Sbjct: 61  APKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQDPDVMAANASSAALMLSD 120

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
           +P+ GP+   +V  I+G +VLNP +DE     L+L  + ++D  LM++++A +++E  + 
Sbjct: 121 IPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRDKTLMIDVQAREITERDLQ 180

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQMIKEDLRVSC 256
             +   H E    I    +LAK   K+        I  K + K+       I+E    S 
Sbjct: 181 AGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKSYEKIRTLSEAPIEEVFTDST 240

Query: 257 FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316
           +   K+ R + ++++ + + +    E    +   +    + ++ +V+R  +++K +R+DG
Sbjct: 241 Y--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRKQVIRKRIIEKGLRVDG 298

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R  + VR +  +       HGS+LF RGDTQ +  VTLG   D Q +DS+ G     FM+
Sbjct: 299 RQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFML 358

Query: 377 HYNFLPCATGEVSRMGAPSRREIGH----------------------------------- 401
           HY+F P +  EV++ G  +RRE+GH                                   
Sbjct: 359 HYSFPPFSINEVAKRGGLNRREVGHDGLHGPIRLGDELRVWIEHKALDPTGFLLTNRLVF 418

Query: 402 --------GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
                   G LA +A+  VLP   +FPYT+R+ SE+  SDGS+SMA+VCG S+ALMDAG+
Sbjct: 419 WERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGI 478

Query: 454 PISKPVAGIAMGLVKDGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           P+ + VAG+++GLV + D        + IL+DI G EDHLG MDFK+AGT  GITA+Q+D
Sbjct: 479 PVREHVAGVSVGLVSEVDQTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITAIQLD 538

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +K  GI  +I+  +L+ A++ R  IL+ M + +S +R      +PR+  ++   D +R +
Sbjct: 539 IKPAGIPLDIICESLEPARKARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKL 598

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +       + I ++TGA+V++ D GTV I + +   ++ A E +  +     EV + YKG
Sbjct: 599 L----FHRKKIEQETGARVSVSD-GTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKG 653

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            V  + ++GAFV F G + GL+HIS+LS ++V+K SDVV  G  + +  +  D RG IKL
Sbjct: 654 VVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKL 713

Query: 686 SMKV 689
           S+K 
Sbjct: 714 SLKA 717


>gi|170781592|ref|YP_001709924.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|257096675|sp|B0RGW7|PNP_CLAMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169156160|emb|CAQ01301.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 757

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 273/718 (38%), Positives = 405/718 (56%), Gaps = 45/718 (6%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYG-ETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ E GR+A+Q+ GAV A    +T++L+     +  KD  DFFPLT++ +ER+Y
Sbjct: 17  KYGTRTVRFEAGRLAQQAQGAVAAYLDEDTMLLSATSVGKHPKDNFDFFPLTIDVEERSY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL+ R+IDR +RP F    +NE QV+I V+    +     
Sbjct: 77  AAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDS 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT------ 181
           +++ AASA+ MLSG+PF GP+ G ++  I  Q+V+ P+  +  +   D+ V+G       
Sbjct: 137 LAINAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDAQ 196

Query: 182 ---QDAVLMVELEANQLSEDVVLDA--------IIFGHNECKPVIEAI--------SKLA 222
                A++MVE EA + + D++           +  G    KP I  +         + A
Sbjct: 197 GNEDVAIMMVEAEATEGAWDLIQAGATKPDEAVVAQGLEAAKPFIRQLVAAQASLAQQAA 256

Query: 223 KMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS- 281
           K     P+ +     S   + +S +  E+L     I +K  R    D LK +     ++ 
Sbjct: 257 KPTVDYPVFLPYAQQSY--DAVSALALEELGTVYRIADKIERQDADDALKTRTKEAVAAK 314

Query: 282 ----EHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               E       E  + ++ +   VVR  +L   +RMDGR    +R + A+V ++ R HG
Sbjct: 315 VEAGELPQSALTEFSAAYKSVTKTVVRGRILRDGIRMDGRGLADIRPLDAEVQVIPRVHG 374

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S++F RG+TQ + V TL   + EQ +DSLS   +  FM HYNF P +TGE  R+G+P RR
Sbjct: 375 SAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRFMTHYNFPPYSTGETGRVGSPKRR 434

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           EIGHG LA RA+ PVLP    FPY +R VSE   S+GS+SM +VC S+L+L++AGVP+  
Sbjct: 435 EIGHGFLAERALVPVLPSREDFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRA 494

Query: 458 PVAGIAMGLVKDGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           PVAGIAMGLV D  D    +  L+DI G ED LG MDFKVAGT   +TA+Q+D K+ GI 
Sbjct: 495 PVAGIAMGLVSDTVDGQVRYAALTDILGAEDALGDMDFKVAGTSEFVTAIQLDTKLDGIP 554

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  AL+QAK  R  IL  +++ +     ++    PRV  + IP D+I  +IG  GK 
Sbjct: 555 TSVLDGALKQAKEARTAILGVLNQAIDAP-DEMAPTAPRVISVNIPVDKIGELIGPKGKT 613

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIYKGQVVKVM 631
           I  I ++TGA ++I++DG V I +      EAAR  + +I +   PEV + + G VVK+ 
Sbjct: 614 INAIQDETGADISIEEDGAVYIGAVDGPSAEAARAQVNAIANPTNPEVGESFLGTVVKIA 673

Query: 632 DFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            FGAFV     +DGL+HIS++      +RV    DV+  G  + V++   DDRGK+ L
Sbjct: 674 TFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQKILVEITKIDDRGKLSL 731


>gi|193690697|ref|XP_001944927.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 762

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 260/722 (36%), Positives = 403/722 (55%), Gaps = 35/722 (4%)

Query: 7   VEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
             ++++ R  +KL  G+ AR SDG  +AT G+T V+AT    +S K   +F PLTV+Y++
Sbjct: 35  YTVDFSDRCSIKLSGGKYARLSDGCAVATLGDTSVMAT-TVSKSTKSSSNFLPLTVDYRQ 93

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +  A G+IP  YLRRE   +E+EIL SR+IDRS+RPLF   Y  +TQ++ N++  D  + 
Sbjct: 94  KAAAAGRIPTNYLRRELSVSEHEILTSRLIDRSLRPLFPSTYCFDTQIMCNLLAVDGINH 153

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQD 183
           P ++S+ AAS AL LS +P+ GPV   +V   +   V NP   E     L+L  VS  ++
Sbjct: 154 PDILSINAASTALALSDIPWNGPVGAVRVGLCDNNLVTNPTRRELSNSELNLVVVSAAKN 213

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK---- 239
            V+M+E  AN + +  VL AI FG  EC+ ++  I  L K   K     ++K+       
Sbjct: 214 LVIMLEGSANNVLQQDVLKAIKFGVKECQHIVNCIDNLQKEFGKPKREFETKNIDDTNGN 273

Query: 240 LEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           LE  +    +  LR         K  R   + D+K +++    S   + N      +F+ 
Sbjct: 274 LETVIDSFCEIKLREIFTNVNHHKISRDIAVKDVKTEVIENLKSNFDNLNLELCSIIFDK 333

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  ++ R ++ +   R DGR  + +R+IS +V L +  HGS+LF RG TQ    V L + 
Sbjct: 334 VCKRIFRNLIFENDTRCDGRKLDDLRNISCEVDLYKPLHGSALFQRGQTQVFCTVALDSI 393

Query: 358 EDEQYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
           +    +D +    SG    +F +HY F P AT ++ RMG   RREIGHG LA R +  ++
Sbjct: 394 DSALKLDPMTILTSGINEKNFFLHYEFPPYATNDIGRMGPSMRREIGHGALAERGLRSIV 453

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-- 471
           P    FP+T+R+ SE+ ES+GSSSMA++CG SLALMDAGVPIS+P AG+A+GL+ + D  
Sbjct: 454 P--ENFPFTIRLTSEVLESNGSSSMASICGGSLALMDAGVPISQPAAGVAIGLITNYDDN 511

Query: 472 ------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
                 D+ IL+DI G ED+LG MDFK+AGT  GITA+Q D+KI G+   I++ A++ A 
Sbjct: 512 DSKHIKDYRILTDILGIEDYLGDMDFKLAGTKKGITALQADIKIPGLPLKIVMEAVEAAT 571

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             +  I+N M+  +  +R Q  +  P  EI+ +P  +   ++G GG  ++ I+ +TGA++
Sbjct: 572 SAKHKIINIMNATIQSTRKQKKDNWPVTEILNVPIHKKGKLLGPGGINLKRIMLETGAQI 631

Query: 586 --NIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
             N ++DG   I + +   ++ A+E     M        E   IYK +VV++ + G  V 
Sbjct: 632 SSNSENDG-FTIFAPNQDALDEAKETVDKLMAEKSEPQLEFGAIYKAKVVEIREIGVMVT 690

Query: 639 F-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
                +  LVH SQL   +++  S + ++EG  + +K    D   G ++LS KV+   + 
Sbjct: 691 LYPSMQPTLVHNSQLDQRKISHPSALGLEEGHEIQIKYFGRDPVSGMMRLSRKVLQGPSS 750

Query: 696 KP 697
            P
Sbjct: 751 SP 752


>gi|73969672|ref|XP_538497.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 1 [Canis familiaris]
          Length = 789

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 232/692 (33%), Positives = 380/692 (54%), Gaps = 29/692 (4%)

Query: 33  ATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILIS 92
              G+T V+ T V        Q F PL V+Y+++  A G+IP  YLRRE   ++ E+L S
Sbjct: 78  LKSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTS 136

Query: 93  RMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGA 152
           R+IDRSIRPLF   Y  +TQV+ N++  D  + P V+++  AS AL LS +P+ GP+   
Sbjct: 137 RVIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAV 196

Query: 153 QVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNE 210
           ++  I+G+ V+NP   E   S L+L V+G  +  ++M+E  A  + +     AI  G   
Sbjct: 197 RIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAENILQQDFCHAIKVGVKY 256

Query: 211 CKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCK 266
            + +I+ I +L K                 ++ E + ++  E L    + +  +K  R +
Sbjct: 257 TQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEIVEHIHKLTMERLYAVFTDYEHDKISRDE 316

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
            I+ ++         +    +  EI+  F  +  +V R+++L++  R DGRD  ++R+I+
Sbjct: 317 AINKIRLDTEEQLKEKFPEADTYEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNIN 376

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHYNFLP 382
            +V L +  HGS+LF RG TQ    VT  + E     ++ + +++G +  +FM+HY F P
Sbjct: 377 CEVDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHYEFPP 436

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            AT E+ ++   +RRE+GHG LA +A++PV+P    FP+T+R+ SE+ ES+GSSSMA+ C
Sbjct: 437 YATNEIGKVTGVNRRELGHGALAEKALYPVIP--KDFPFTIRVTSEVLESNGSSSMASAC 494

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVK-------DGDDFIILSDISGDEDHLGHMDFKVAG 495
           G SLALMDAGVPIS  VAG+A+GLV        + +D+ +L+DI G ED+ G MDFK+AG
Sbjct: 495 GGSLALMDAGVPISSAVAGVAIGLVTKNNPDKGEIEDYRLLTDILGIEDYNGDMDFKIAG 554

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
           T  GITA+Q D+K+ GI   I++ A+QQA   +  IL  M+K +S+ R    E  P VE 
Sbjct: 555 TSKGITALQADIKLPGIPIKIVMEAIQQASVAKREILQIMNKTISKPRASRKENGPVVET 614

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT- 614
           + +P  +    +G GG  ++ +  +TG  V+  D+ T  + + + + +  AR+ I  +  
Sbjct: 615 VQVPLSKRAKFVGPGGYHLKKLQAETGVTVSQVDEETFSVFAPTPSAMHEARDFITELCK 674

Query: 615 ----DVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGD 668
                  E   +Y   + ++ D G  V         L+H +QL   ++   + + ++ G 
Sbjct: 675 DDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQ 734

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            + VK    D   G+++LS KV+ Q+    +V
Sbjct: 735 EIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 765



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 38/221 (17%)

Query: 28  DGAVLATYGETVVLATVVYDR-SLKDGQDFFP----------LTVNYQERTYAVGKIPGG 76
            G+ L   G+T V  TV +D        D               ++Y+   YA  +I   
Sbjct: 386 HGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHYEFPPYATNEIG-- 443

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
              + +     E+    + ++++ P+  K +    +V   V++ +  SS  + S    S 
Sbjct: 444 ---KVTGVNRRELGHGALAEKALYPVIPKDFPFTIRVTSEVLESNGSSS--MASACGGSL 498

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---------------GSLDLFVSGT 181
           ALM +G+P    V G  +  +      NP   E +               G +D  ++GT
Sbjct: 499 ALMDAGVPISSAVAGVAIGLVTKN---NPDKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 555

Query: 182 QDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
              +  ++ +     +   +V++AI       + +++ ++K
Sbjct: 556 SKGITALQADIKLPGIPIKIVMEAIQQASVAKREILQIMNK 596


>gi|85057750|ref|YP_456666.1| polynucleotide phosphorylase/polyadenylase [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123725338|sp|Q2NJ06|PNP_AYWBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84789855|gb|ABC65587.1| polyribonucleotide nucleotidyltransferase [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 715

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 272/691 (39%), Positives = 418/691 (60%), Gaps = 27/691 (3%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D ++L  Y +TVVL T+V+ R      DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDSSILVRYQDTVVLTTMVFSRKPN-NLDFLPLTVIYQEKLYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE R  ++EIL SR+IDRS+RPLF   ++ E QVI  V+  D +    + SM+ +S
Sbjct: 74  SFLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGSS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            +L++S +PF   + G  V  IN ++++NP L +   S L L V+GT+  V M+E  AN+
Sbjct: 134 LSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKHNVTMIEAHANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE-MSQMIKEDLR 253
           +SE   L+AI F H   K +      + +  A   +        +++++         ++
Sbjct: 194 VSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPVKMTKTLHQTEQIQQQSFFAKNHSQVK 253

Query: 254 VSC-----FIPEKYVRCKQIDDLKK-------KMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
            +          + ++ + +D  K+         ++ F  E    +     ++F+ +  +
Sbjct: 254 QAILSCNSKNDLQQLKEQILDQAKQTPFFKTIDAITVFDYEAHKKHLQITENLFQKLSKQ 313

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            +R+++L +K+R D R+ E +R + +Q+ LL R HGS+LF RG TQ++  VTLG   + +
Sbjct: 314 EMRSLILQEKIRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESK 373

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D LS  Q   FM+HYNF P + G V R  APSRREIGHG LA +AI  VLP+   FPY
Sbjct: 374 IIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEEKDFPY 433

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479
           T+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAGI++GLV  ++ + ++ILSDI
Sbjct: 434 TIRVVSEILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETNKYVILSDI 493

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH+G MD K+AGT+ GITA+QMD+KI GI   I+  A  QAK+GRLHIL +M++ +
Sbjct: 494 QGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIPFKILQEAFLQAKKGRLHILEQMNQTI 553

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTVKIASS 598
           S+ RL++ ++ P+V +M I P++IR++IG GGK+I  I+E   G K++I+ DG V +  S
Sbjct: 554 SQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGRVFVMHS 613

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLVHISQL 652
           +L  ++     I S+    +V   Y+  +++ +        GA    C   +GL+H++++
Sbjct: 614 NLETVKKTVAFIESLIQEIQVGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGLIHVNKM 673

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
              +  K +DV+K G+TV VK    ++RG+I
Sbjct: 674 ---KFQKITDVLKIGETVLVKCTKINERGRI 701


>gi|39938737|ref|NP_950503.1| polynucleotide phosphorylase/polyadenylase [Onion yellows
           phytoplasma OY-M]
 gi|81402500|sp|Q6YQX2|PNP_ONYPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39721846|dbj|BAD04336.1| polyribonucleotide nucleotidyltransferase [Onion yellows
           phytoplasma OY-M]
          Length = 715

 Score =  603 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/691 (40%), Positives = 409/691 (59%), Gaps = 27/691 (3%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D ++L  Y +TVVL T V+ R      DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDASILVRYQDTVVLTTTVFSRKPN-NLDFLPLTVIYQEKLYAAGKIPG 73

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE R  ++EIL SR+IDRS+RPLF   ++ E QVI  V+  D +    + SM+ +S
Sbjct: 74  SFLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGSS 133

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQ 194
            +L++S +PF   + G  V  IN ++++NP L +   S L L V+GT+  V M+E  AN+
Sbjct: 134 LSLLISEIPFFEAISGVYVGKINDKFIINPTLQQLANSTLHLMVAGTKHNVTMIEAHANE 193

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQMIK 249
           +SE   L+AI F H   K +      + +  A   I       +         +    +K
Sbjct: 194 VSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPAKITNTLHQTEQTQQQAFFAKHQSQVK 253

Query: 250 EDLRVSCFIPEKYVRCKQI-DDLKK-------KMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           + +       +     +QI D  K+          + F  E    +     ++F+ +  +
Sbjct: 254 QAILSCNSKNDLQQLKEQILDQAKQTPFFKTIDTATVFDYEAHKKHLQTTETLFQKLSKQ 313

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             R+++L +K+R D R  E +R + +Q+ LL R HGS+LF RG TQ++  VTLG   + +
Sbjct: 314 ETRSLILQEKIRPDKRGLEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGCLSESK 373

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D LS  Q   FM+HYNF P + G V R  APSRREIGHG LA +AI  VLP+   FPY
Sbjct: 374 IIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEEKDFPY 433

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDI 479
           T+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAG+++GLV D   + ++ILSDI
Sbjct: 434 TIRVVSEILESNGSSSQATVCASSLALMASGVPLKKAVAGMSVGLVFDQATNKYVILSDI 493

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G EDH+G MD K+AGT+ GITA+QMD+KI GI   I+  A  QAK+GRLHIL  MS+ +
Sbjct: 494 QGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIHFKILQEAFLQAKKGRLHILEHMSQTI 553

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTVKIASS 598
           S+ RL++ ++ P+V +M I P++IR++IG GGK+I  I+E   G K++I+ DG V +  S
Sbjct: 554 SQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGRVFVMHS 613

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLVHISQL 652
           +L  ++     I S+    ++   Y+  +++ +        GA    C   +GL+H++Q 
Sbjct: 614 NLETVKKTVAFIESLIQEIQIGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGLIHVNQ- 672

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
             ++  K +DV+K G+TV VK    +DRG+I
Sbjct: 673 --KKFQKITDVLKIGETVSVKCTKINDRGRI 701


>gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
 gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
          Length = 721

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/682 (37%), Positives = 389/682 (57%), Gaps = 23/682 (3%)

Query: 33  ATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILIS 92
            T G++V+ AT   D+  K   DF PL+V +QER  + G   G + +R+ RP E+EIL+ 
Sbjct: 1   MTRGDSVLYATASRDKD-KRDIDFLPLSVEHQERFSSAGTTSGAFNKRDGRPAEHEILVC 59

Query: 93  RMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGA 152
           R+IDR +RPL ++ +++ETQ++  ++ +D   +   +++ A++AAL LS +P   PV  A
Sbjct: 60  RLIDRPLRPLIAEGWRHETQLLSWILSYDGVRTCDPLAITASAAALWLSDVPLLKPVAAA 119

Query: 153 QVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNEC 211
            V YI+GQ VLNP +++ +   L+L V+GT++AVLM+E  A+ L ED++++A+ FGH   
Sbjct: 120 MVGYIDGQLVLNPTVEQMKHSRLNLTVAGTKEAVLMIEGAADFLPEDLMVEAVTFGHEAI 179

Query: 212 KPVIEAISKLAKMCAK-EPIVIDSKDFSKLEEEMSQMIKEDLRVSCF-IPEKYVRCKQID 269
           K     + +L K+  K +           L+E M ++  + +         K  +     
Sbjct: 180 KIQCAGLEELGKVAGKAKKYDSIKPPVEGLQEAMDELFTDKVDEIFNGDMAKKDQSAAQS 239

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            L + ++  F  ++    +  + + F+D+  + +         R+DGR    VR I ++ 
Sbjct: 240 QLNEAVMLEFEEKYPEE-KAAVKAAFKDLLCRRMFAKAKASGTRIDGRKLNEVRVIDSEA 298

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
           GL  R HGS+LF RG+TQ +   TLG     Q +D +SG +   F + Y F P   GE  
Sbjct: 299 GLFPRVHGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEKRFYLQYTFPPSCVGETG 358

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+GAP RRE+GHG LA RA+ P LP  A FPY +R+ S +TES+GSSSMA+VCG  LALM
Sbjct: 359 RVGAPGRREVGHGNLAERALVPTLPSEADFPYAIRVESLVTESNGSSSMASVCGGCLALM 418

Query: 450 DAGVPISKPVAGIAMGLV------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           DAGVPI  P+AGIAMG++         ++ +I+SDI G ED LG MDFKVAG   GIT  
Sbjct: 419 DAGVPIKSPIAGIAMGMLLGDKGGVSDENAVIVSDILGTEDALGTMDFKVAGNKEGITTF 478

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q+D+K  G++   M  AL QAK GRLHIL EM K L E R +L    P++  + I PD I
Sbjct: 479 QLDIKCEGLTLETMKKALDQAKEGRLHILGEMEKALKEPRAELPASVPKMIKVTISPDSI 538

Query: 564 RNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNK 621
             VIG GG+ IR ++E      +++D+ G ++I    + ++E A+EMI +     PE  K
Sbjct: 539 GKVIGPGGRQIRALIEDFKLDNIDVDESGEIQILGFDMEQMEKAKEMIPTYVGPEPEEGK 598

Query: 622 IYKGQVVKVMDFGAFVHFC--------GARDGLVHISQLSTERVAKTSDVVKEG--DTVW 671
           IY G++  + +FG FV              +GL H+S+L  ERV  T   ++    +T+ 
Sbjct: 599 IYTGKITGIHNFGVFVEILPGAEDGSTPGLEGLCHVSELHIERVRNTEGFIRAMNTETLE 658

Query: 672 VKLLDFDDRGKIKLSMKVVDQN 693
           V     + +G+ +LS K V + 
Sbjct: 659 VVYQGKNKKGQHQLSRKAVLEE 680



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 81/217 (37%), Gaps = 25/217 (11%)

Query: 28  DGAVLATYGETVVLATVV-YDRSLKDGQDFFP------LTVNYQERTYAVGKIPGGYLRR 80
            G+ L T GET V+AT    D  ++   D           + Y      VG+       R
Sbjct: 305 HGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEKRFYLQYTFPPSCVGETG-----R 359

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
              P   E+    + +R++ P           + +  +  +   S  + S+     ALM 
Sbjct: 360 VGAPGRREVGHGNLAERALVPTLPSEADFPYAIRVESLVTESNGSSSMASVCGGCLALMD 419

Query: 141 SGLPFEGPVVGAQVDYI--------NGQYVLNPRL---DEDQGSLDLFVSGTQDAVLMVE 189
           +G+P + P+ G  +  +        +   V+   +   ++  G++D  V+G ++ +   +
Sbjct: 420 AGVPIKSPIAGIAMGMLLGDKGGVSDENAVIVSDILGTEDALGTMDFKVAGNKEGITTFQ 479

Query: 190 LE--ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L+     L+ + +  A+         ++  + K  K 
Sbjct: 480 LDIKCEGLTLETMKKALDQAKEGRLHILGEMEKALKE 516


>gi|157111536|ref|XP_001651608.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
 gi|108883782|gb|EAT48007.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
          Length = 777

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 243/706 (34%), Positives = 396/706 (56%), Gaps = 29/706 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD-FFPLTVNYQERTYAVG 71
           GR +++ +G+ AR +DG  + + G+T V+ T V       G + F PL V+Y+++  A G
Sbjct: 44  GRVIRISSGKYARFADGCSVVSVGDTAVMVTAVAKPKPSGGNNSFLPLVVDYRQKAAAAG 103

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IP  +LRRE  P+E EIL +R++DRSIRP+F   Y+++TQ++ N++  D  + P V ++
Sbjct: 104 RIPTNFLRRELGPSEKEILAARLVDRSIRPMFPAEYRSDTQLVCNMLAIDSSNLPDVQAI 163

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV-SGTQDAVLMVE 189
            AASAAL LS +P+ GP+   +V  ++ + ++NP   E Q  SLDL V +  Q+ V+M+E
Sbjct: 164 NAASAALALSDIPWNGPIGAVRVGLVDNEIIINPTRKELQLSSLDLVVTAAKQNLVVMLE 223

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQM 247
              N ++E+ +  AI  G  E + +I  I KL K   K    +D   +   ++E  +  M
Sbjct: 224 GRGNVVNENELRMAIKKGTKEAQLIINGIEKLQKSFGKPKRTLDPLPQAAEEIEAAVRTM 283

Query: 248 IKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
            +  LR     F  +K  R + + + +   +    S + + +   I   F      V R 
Sbjct: 284 AEMRLREIFRDFAHDKLSRDQAVTNSRTDTIDKVWSSYPNVDPALITDCFNRFSKTVFRE 343

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ ++  R DGR  + +R IS  V L +  HGS+LF RG TQ    V L + E    +D 
Sbjct: 344 MIFEENRRCDGRQLDDLRKISCGVNLHKPLHGSALFQRGQTQVFATVALDSHESALKLDP 403

Query: 366 LS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++    G +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P   + P+
Sbjct: 404 ITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLVPIIP--HEHPF 461

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DF 473
           T+R+ +E+ ES+GSSSMATVC  S+ALMDAG+P+ +  AG+A+GLV   +        D+
Sbjct: 462 TIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLVTKYENNDTKHLQDY 521

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+D+ G ED++G MD KVAGT  G+TA+Q D+K+ GI   +++ +LQ+A   R  IL+
Sbjct: 522 RILTDLLGIEDYMGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFRILD 581

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M + ++ +R    +  P  + + I P Q   ++G GG  IR +  +TG ++N +D+ T 
Sbjct: 582 IMDETIASARTLKKDCWPVTDQLQIEPHQRSKLVGPGGINIRRLYLETGVQLNQEDEHTF 641

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQVVKVMDFGAFVHF-CGARDGLV 647
           +I + S A +  A+E + S+  V ++       IY  ++V++ D G  V         L+
Sbjct: 642 RIFAPSEAAMHEAKEYLESLMKVEKIPDLEFGAIYTAKIVELKDTGVMVTLYPSMPPALL 701

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 702 HNSQLDQRKIAHPSALGLEVGSEIQVKYFGRDPVSGFMRLSRKVLQ 747


>gi|223940512|ref|ZP_03632361.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
 gi|223890836|gb|EEF57348.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
          Length = 664

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 239/600 (39%), Positives = 372/600 (62%), Gaps = 12/600 (2%)

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF K + NE QV   V+  D E+ P ++S++ ASA+LM+S +P+ GP+   ++  +NG+
Sbjct: 1   PLFPKGWYNEVQVQTVVLSADGENDPDILSIIGASASLMVSDIPWAGPLGALRIARVNGK 60

Query: 161 YVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++  P   E  +  LDL   G ++ ++M E    ++SE+    A+ FG + CKP+I A  
Sbjct: 61  FIAIPTHAEMAESDLDLIYVGNENDIVMFEGAGEEISEEDFKAALKFGQDCCKPLIAAQK 120

Query: 220 KLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
           +LA    K+   +      + + +E   +  + +  +   P K  R   ++ + +++   
Sbjct: 121 ELAAKAGKKKREVKLNIVPEEILKEAKALAGDRIVPALLTPSKLAREAAVNAIFEEVGKK 180

Query: 279 FSSEH--SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
              +       E  +      IQ + VR +++ +  RMDGR  + +R I ++ G+L R H
Sbjct: 181 LVEKFGAEKVTEFVLKDASYYIQKEAVRGLIMKEGKRMDGRPLDGIRAIHSEAGILPRAH 240

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPS 395
           GS+LF RG+TQ + + TLGT ED Q  DS +G +    F++HYNF   + GE  R+  P 
Sbjct: 241 GSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHYNFPNYSVGETGRISGPG 300

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           RREIGHG LA R+I P++P   ++PY +R+ SEI ES+GS+SMA+VCG +LALMDAGVP+
Sbjct: 301 RREIGHGALAERSIEPMIPL-DKYPYAIRVTSEIMESNGSTSMASVCGGTLALMDAGVPM 359

Query: 456 SKPVAGIAMGLVKDGDD------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
            +PVAGI++G+  + D       + +LSDI G ED  G MD K+AGT+ GIT  Q+D+K+
Sbjct: 360 IRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGFGDMDCKIAGTEKGITGFQLDLKL 419

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            GI  ++M   L++A+  RL IL EM+K L+  R ++ ++ PR+E + I P++I  +IG 
Sbjct: 420 RGIPHDMMAETLEKARVARLFILGEMAKTLAAPRTEMSKYAPRIETVRINPEKIGALIGP 479

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           GGK I+ +VE++G ++NI+DDGTV I S S   ++ AR+ I  +T   E+ KIY+G+VV 
Sbjct: 480 GGKNIKRLVEESGCEINIEDDGTVNIYSVSSEGMKIARDAIVGMTAEAEIGKIYRGKVVT 539

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V +FGAFV F   +DGLVHIS+L+  RV +T D+VK GD +WVK L  D++G++KLS + 
Sbjct: 540 VKEFGAFVEFLPGKDGLVHISELANFRVKQTEDIVKIGDEIWVKCLGVDEKGRVKLSRRA 599



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 30/216 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET--VVLATVVYDRSLKD------GQDFFPLTVNYQE 65
           R +  E G + R + G+ L + GET  V LAT+      ++      G +     ++Y  
Sbjct: 227 RAIHSEAGILPR-AHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHYNF 285

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVIINVMQHDLES 124
             Y+VG+       R S P   EI    + +RSI P+     Y    +V   +M+ +   
Sbjct: 286 PNYSVGETG-----RISGPGRREIGHGALAERSIEPMIPLDKYPYAIRVTSEIMESNG-- 338

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP-----------RLDEDQGS 173
           S  + S+   + ALM +G+P   PV G  +        ++              ++  G 
Sbjct: 339 STSMASVCGGTLALMDAGVPMIRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGFGD 398

Query: 174 LDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFG 207
           +D  ++GT+  +   +L+     +  D++ + +   
Sbjct: 399 MDCKIAGTEKGITGFQLDLKLRGIPHDMMAETLEKA 434


>gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
 gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase
           protein [Ralstonia solanacearum IPO1609]
          Length = 481

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 234/481 (48%), Positives = 333/481 (69%), Gaps = 2/481 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+    E +W    +++ETG IARQ+ GAVL    +TVVLATVV  ++ K GQDFFPLT
Sbjct: 1   MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA GKIPGG+ +RE RP+ENE L SR+IDR +RPLF + + NE QV+++V+  
Sbjct: 61  VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + E    + ++VAASAAL +SGLPF GPV  A+V Y +GQY+LNP   +     LDL V+
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
           GT+ AVLMVE EA QLSE+V+L A+++GH + +  I AI  L +   K      +     
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            L  ++S++   DL+ +  + +K  R +++ ++   + +  +      +  E+ ++  ++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           ++K+VR  +L+ + R+DGRD+ TVR I  +  +L R HGS+LF RG+TQA+VV TLGT+ 
Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ +D+L G  R+ FM+HYN  P ATGE  R+G+P RREIGHGRLA+RA+ PVLP+  +
Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           F YT+R+VSEITES+GSSSMA+VCG  LALMDAGVP+   VAG+AMGL+ +G+ F +L+D
Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLTD 480

Query: 479 I 479
           I
Sbjct: 481 I 481


>gi|261878984|ref|ZP_06005411.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
 gi|270334369|gb|EFA45155.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
          Length = 616

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 245/618 (39%), Positives = 364/618 (58%), Gaps = 21/618 (3%)

Query: 2   FDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
            +V T  ++   GR + +ETG++A+Q+DGA +   G TV+LATV   +    G DF PL 
Sbjct: 1   MNVITKTVQLPDGRTISIETGKVAKQADGAAVLRLGNTVLLATVCAAKEAVPGTDFMPLQ 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+E+  A G+ PGG+ +RE +P++ EIL SR+IDR++RPLF   Y  E  V + ++  
Sbjct: 61  VDYREQYSAAGRFPGGFTKREGKPSDEEILTSRLIDRALRPLFPADYHCEVYVQVMLLSA 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D    P  ++  AASAA+  S +PF+  +   +V  +NG++V+NP   + ++  +DL V 
Sbjct: 121 DGVDQPDALAGFAASAAMACSDIPFDYTISEVRVARVNGEFVINPTFQQMEEADMDLMVG 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            T+D ++MVE E  ++ E  ++ A+   H   KP+     +L+K    +       + + 
Sbjct: 181 ATKDNIMMVEGEMKEVQETDLIAALKAAHEAIKPMCVLQEELSKELGTDTKREYEDEVN- 239

Query: 240 LEEEMSQMIKEDLRVSCF-----IPEKYVRCKQIDDLKKKMVSY-------FSSEHSSWN 287
            ++E+ Q IK++L    +       EK+ R +  D +    +          + +     
Sbjct: 240 -DDELCQQIKDELYQPVYDVNRQALEKHARHEAFDKIFADFIEKYDAAHTDLTEDELEEK 298

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
             E    +ED+    +R  +LD+ +R+DGR +  +R I  +V  L   HGS++F RG+T 
Sbjct: 299 HAEAARYYEDVMRDAMRRCILDEGLRLDGRGTTDIRPIWCEVSPLPMPHGSAIFQRGETM 358

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           ++   TLGT+ DE+ VD++       F++HYNF P +TGE        RREIGHG LA R
Sbjct: 359 SLSTCTLGTKLDEKLVDNVLNRGYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWR 418

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
            I   +P    FPYT+R+VS+I ES+GSSSMATVC  +LALMDAGVP+ KPVAGIAMGL+
Sbjct: 419 GIKDQIP--EDFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVAGIAMGLI 476

Query: 468 KD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           K+   D + ILSDI GDEDHLG MDFK  GT  G+TA QMD+K  G+S  I+  AL QAK
Sbjct: 477 KNPGEDKYAILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAK 536

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             R HI+ EM K LSE R ++    PR+  + IP + I  VIG GGK+I+ + E TG+ +
Sbjct: 537 DAREHIMGEMMKTLSEPRKEMKPQVPRIVAIEIPKEFIGAVIGPGGKIIQQLQEDTGSTI 596

Query: 586 NIDD-DGTVKIASSSLAE 602
            ID+ DG  K+  S+  +
Sbjct: 597 TIDEVDGVGKVQVSAPNK 614


>gi|303273102|ref|XP_003055912.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461996|gb|EEH59288.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 823

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 281/729 (38%), Positives = 413/729 (56%), Gaps = 53/729 (7%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
            + +ETG+I +Q++GAV+ + GET +  T+   R +     F PLTVNY ER  A G+  
Sbjct: 33  QVVVETGKIGKQANGAVIVSEGETQMYVTICAGRDVVADGGFVPLTVNYMERFSAAGRTS 92

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
           GGY +R+    E+E LI R++DR +RP+  K +  ETQ++  V+ +D   S   +++ AA
Sbjct: 93  GGYRKRDGGVREHETLIGRLVDRPLRPMIPKAWAYETQILQWVLSYDGNRSTDALAITAA 152

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQGS-LDLFVSGTQDAVLMVELE 191
           SAA  +S +P   PV G +V ++ G    ++NP  ++ + S LDL ++GT+DAV+M+E  
Sbjct: 153 SAAAAVSDVPLSKPVCGVRVGFLPGDATPIVNPTTEQMENSRLDLLLAGTEDAVMMIEGY 212

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKE 250
            + LS D ++ AI  GH     V   +SK A    K             + E +   + +
Sbjct: 213 GDFLSVDEMITAIAAGHAAIASVCRELSKWAAEVGKAKATERLLTAPDGIYESVKAAVGD 272

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----------------------- 287
           +L V+  I +K +R   ++ L+ K +   S                              
Sbjct: 273 ELAVAMAIGKKQIRGAAVERLRSKAIEMVSGLDKENAAYKASARAAQLPSAHMHALLKPR 332

Query: 288 ------------------EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
                               ++    E I+++ +R ++  +  R DGRD  TVR IS + 
Sbjct: 333 ALRTHARPTLGSHPGTSGPEDVRLACEKIESEALRDMIRSRGTRQDGRDVYTVRPISCEG 392

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
           G L RTHGSSLF RG+TQAI   TLG++ D Q  D ++      F +HY F P + GE  
Sbjct: 393 GFLHRTHGSSLFTRGETQAIAAATLGSQSDAQRFDGIAEMDDRRFYLHYFFPPSSVGECG 452

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
           R+GA SRRE+GHG LA RA+ PVLP   +FP+T+R+ S ITES+GSSSMATVC   LAL 
Sbjct: 453 RVGAASRREVGHGNLAERALAPVLPSKDEFPFTVRLESTITESNGSSSMATVCAGCLALQ 512

Query: 450 DAGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           DAGVPI + VAGIAMGLV      G+D I+L+DI G ED LG MDFKVAG   G++A QM
Sbjct: 513 DAGVPIRRKVAGIAMGLVLGDETKGEDAIVLTDILGSEDALGDMDFKVAGDGEGMSAFQM 572

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL--QLGEFTPRVEIMAIPPDQI 563
           D+K+ GIS  +M  AL++A+ G +HIL EM K     R   ++ ++ PR+E++ +    I
Sbjct: 573 DIKVEGISLPVMRTALERAREGLIHILGEMDKADPSPRKGGEMSKYAPRIEVVEVNTKYI 632

Query: 564 RNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
             +IG GG+ I+ I E+T    ++I++DG   +  S   ++  A E+I  +T  PE+ KI
Sbjct: 633 GKIIGKGGEQIKSICEETRIDTIDINNDGVCVLTGSYGCDMARALEIIAELTIEPEIGKI 692

Query: 623 YKG-QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           Y+  +V KV++FGAFV      +GL H+S+L   RVA   DVV +GD + VKLL+ ++RG
Sbjct: 693 YRNSRVTKVLEFGAFVEILPGVEGLCHVSELDVTRVANVKDVVNDGDFIDVKLLETNERG 752

Query: 682 KIKLSMKVV 690
           + KLS + V
Sbjct: 753 QYKLSRREV 761


>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
 gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
          Length = 730

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/709 (36%), Positives = 401/709 (56%), Gaps = 70/709 (9%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           +V+I    R + +ETG I RQ+ G+V  T GET+V  +V  D    +  DF+PL+VNYQE
Sbjct: 22  SVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLDDVPSEPSDFYPLSVNYQE 81

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +RE +  ++E+LI R+IDR +RP   K + +ETQ++  V+ +D   S
Sbjct: 82  RFSAAGRTSGGFFKREGKLKDHEVLICRLIDRPLRPTMFKGFYHETQILSWVLSYDGLHS 141

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQDA 184
           P  +++ AA  A+ LS +P    + G +V  ++ ++++NP   + ++  LDL ++GT  A
Sbjct: 142 PDSLAVTAAGIAVALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESELDLLLAGTDSA 201

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEE 243
           + M+E   N L+E+ +LDA+  G +  + +   +  L K C K  ++   K   ++L + 
Sbjct: 202 IFMIEGYCNFLTEEKLLDAVQIGQDAVRAICNEVGVLVKKCGKAKMLDAIKLPPAELYKH 261

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS------------------ 285
           + ++  ++L     I  K  R K +  L++K++S  + +                     
Sbjct: 262 VEEIAGDELVKILQITSKVPRRKALASLEEKVLSILTEKGYVSKDERFGTPETVADLLEV 321

Query: 286 -------------------------------WNEGEIVSVFEDIQAKVVRTVMLDKKVRM 314
                                          ++E ++  VF+++ +K +R  +++   R 
Sbjct: 322 EDEDEEIVVDGEVDEGDVHIKPIGRKFSPLLFSEVDVKLVFKEVTSKFLRKRIVEGGKRS 381

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR-ND 373
           DGR  + +R I ++ G+L R HGS+LF RG+TQ++ VVTLG ++  Q VD+L   +    
Sbjct: 382 DGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEFKR 441

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           F + Y F P   GEV R+GAPSRREIGHG L  RA+ P+LP    FPYT+R+ S ITES+
Sbjct: 442 FYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDFPYTVRVESTITESN 501

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDHLG 487
           GSSSMA+VCG  LAL DAGVP+   +AGIAMG+V D ++F      +ILSDI+G ED  G
Sbjct: 502 GSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPLILSDITGSEDASG 561

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG + GITA QMD+K+GGI+  +M  AL QA+ GR HIL EM K       +L 
Sbjct: 562 DMDFKVAGNEDGITAFQMDIKVGGITLPVMRKALLQARDGRQHILAEMLKCSPFPSERLS 621

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           ++ P + IM + P ++  +IG GGK ++ I+E+TG + ++  +DG VKI +  L+ IE +
Sbjct: 622 KYAPLIHIMKVNPKKVNIIIGSGGKKVKSIIEETGVEAIDTREDGIVKITAKDLSSIEKS 681

Query: 607 REMIRSITDVPEVNKIYK-----------GQVVKVMDFGAFVHFCGARD 644
           + +I  +T VP V  IY+            ++  V  +G FV     R+
Sbjct: 682 KSIINQLTMVPNVGDIYRHVLSLSCFSLNCEIKSVAPYGVFVEIAPGRE 730


>gi|305431698|ref|ZP_07400867.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
 gi|304445293|gb|EFM37937.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
          Length = 738

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/729 (37%), Positives = 418/729 (57%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE  G     +  ++A+Q+ GAVL   G++VVLA V  +    + +DF PLTV Y E+
Sbjct: 22  YSIEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREEKPVE-EDFLPLTVQYIEK 80

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 81  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDL 140

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I  ++VLNP  +E + S LDL+V+G +D +
Sbjct: 141 QVMSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDEL 200

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 201 LMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNAY 260

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +    D  +  +L   +     + +  +     K  R  +++ + +K++
Sbjct: 261 EEAFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIVQAINQMAKSERASELNKIAEKIL 320

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           ++     + W+E  I++    ++ K+VR+ +L+ K R DGR+   VR I+ +  +L   H
Sbjct: 321 NF--ESATKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIAIETNILPNAH 378

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG+  D Q VD L+        FM++YNF   + GE S + AP
Sbjct: 379 GSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPINERFMVNYNFPGFSVGEASPIKAP 438

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 439 GRRELGHGNLAKRALYPSID--ENYPYIIRLVSEILESNGSSSMATVCGGSLALRAAGVP 496

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ +GD + IL+DI G EDH G MDFKVAG+  GITA+QMD+K+GGI +
Sbjct: 497 SLKLVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGIDQ 556

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            I+  AL QAK GR+HILN M + L E  +   E  P++E+  + P +I ++IG  GK I
Sbjct: 557 KILKEALYQAKEGRIHILNIMEEALKEIVVN-EEVLPKLELFNVDPSKIVDIIGQAGKTI 615

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA +   +I+AA++ I +IT                  E
Sbjct: 616 KEIIEKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNKKGFKEKDLSNFE 675

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G+V K+ +FGAF+      DGL+H S+            + E   + VK+ +  
Sbjct: 676 IGEEFEGKVKKITNFGAFIELKNGIDGLLHNSKSKNLN-------LSENQILKVKVSEI- 727

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 728 KNGKISVDL 736


>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
          Length = 865

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 268/766 (34%), Positives = 409/766 (53%), Gaps = 122/766 (15%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             + +I    R + +ETG I RQ+  +V+ T GETV                        
Sbjct: 89  KFSTKIPVGDRHILVETGHIGRQASASVMVTDGETV------------------------ 124

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
                                     L+ R+IDR +RP   K +  ETQ++  V  +D  
Sbjct: 125 --------------------------LVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGI 158

Query: 124 SSPHVVSMVAASAAL-------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDE- 169
            SP  +++ AA  A+              LS +P +  + G ++  IN Q+V+NP  ++ 
Sbjct: 159 HSPDSLAITAAGVAICSCSYLPQSFLCRALSEVPNKQTIAGVRIGMINDQFVVNPTTEQM 218

Query: 170 DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           D   LDL ++GT  A+LM+E   + L+E+ +L A+  G    + + +AI  L + C K+ 
Sbjct: 219 DDSELDLVMAGTDSAILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKK 278

Query: 230 IVIDSKDFS-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----- 283
           +         +L   +  +  ++L  +  I EK +R K +  L++K+++  S +      
Sbjct: 279 MFDAIDLPPPELYRHVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVAKD 338

Query: 284 -------------------------------------------SSWNEGEIVSVFEDIQA 300
                                                        ++E ++  VF+++ +
Sbjct: 339 ESSGVSENLADVIEEEDEDEVIVDGEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSS 398

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           K +R  +++   R DGR    +R I++Q GLL R HGS+LF RG+TQA+ VVTLG  +  
Sbjct: 399 KFLRRRIVEGGKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMA 458

Query: 361 QYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           Q +D+L    +   F + Y F P + GEV R+GAP+RREIGHG LA RA+ P+LP    F
Sbjct: 459 QRIDNLVDTEESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDF 518

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------ 473
           PYT+R+ S ITES+GSSSMA+VCG  LAL DAGVPI  PVAGIAMGLV D  +F      
Sbjct: 519 PYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKP 578

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +ILSDI+G ED  G MDFKVAG ++GI+A QMD+K+ GI+  IM  AL QA+ GR HILN
Sbjct: 579 LILSDITGAEDASGDMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILN 638

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGT 592
           EMSK        L  + P + +M + P+++  +IG GGK I+ I+E+TG   ++  DDGT
Sbjct: 639 EMSKCSPPPAKVLSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGT 698

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQ 651
           VKI +  L+ +E ++ +I ++T VP+V +IY+   +K +  +GAFV     R+GL HIS+
Sbjct: 699 VKITARDLSSLEKSKAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISE 758

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           LS+  +AK  D  K GD + VKL++ +D+G+++LS + +  +  + 
Sbjct: 759 LSSSWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQE 804


>gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
 gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
          Length = 719

 Score =  594 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 276/729 (37%), Positives = 418/729 (57%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE  G     +  ++A+Q+ GAVL   G++VVLA V  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREEKPVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I  ++VLNP  +E + S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +    D  +  +L   +     + +  +     K  R  +++ + +K++
Sbjct: 242 EEAFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIIQAINQMAKSERASELNKIAEKIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           ++     + W+E  I++    ++ K+VR+ +L+ K R DGR+   VR I+ +  +L   H
Sbjct: 302 NF--ESATKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIAIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG+  D Q VD L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPINERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSID--ENYPYIIRLVSEILESNGSSSMATVCGGSLALRAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ +GD + IL+DI G EDH G MDFKVAG+  GITA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            I+  AL QAK GR+HILN M + L E  +   E  P++E+  + P +I ++IG  GK I
Sbjct: 538 KILKEALYQAKEGRIHILNIMEEALKEIVVN-EEVLPKLELFNVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA +   +I+AA++ I +IT                  E
Sbjct: 597 KEIIEKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNKKGFKEKDLSNFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G+V K+ +FGAF+      DGL+H S+            + E   + VK+ +  
Sbjct: 657 IGEEFEGKVKKITNFGAFIELKNGIDGLLHNSKSKNLN-------LSENQILKVKVSEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|42632644|gb|AAS22253.1| polynucleotide phosphorylase [Aster yellows witches'-broom
           phytoplasma]
          Length = 716

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/692 (38%), Positives = 415/692 (59%), Gaps = 28/692 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
            ++E G  AR  D ++L  Y +TVVL T+V+ R      DF PLTV YQE+ YA GKIPG
Sbjct: 15  FQVEIGTYARNVDSSILVRYQDTVVLTTMVFSRKPN-NLDFLPLTVIYQEKLYAAGKIPG 73

Query: 76  GYLR-RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
            +L  R     ++EIL SR+IDRS+RPLF   ++ E QVI  V+  D +    + SM+ +
Sbjct: 74  SFLTPRRGGSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPDFKSELASMLGS 133

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEAN 193
           S +L++S +PF   + G  V  IN ++++NP L +   S L L V+GT+  V M+E  AN
Sbjct: 134 SLSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKHNVTMIEAHAN 193

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE-MSQMIKEDL 252
           ++SE   L+AI F H   K +      + +  A   +        +++++         +
Sbjct: 194 EVSEQDFLEAINFAHQYIKKLCLFQENIKQQFAPVKMTKTLHQTEQIQQQSFFAKNHSQV 253

Query: 253 RVSC-----FIPEKYVRCKQIDDLKK-------KMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           + +          + ++ + +D  K+         ++ F  E    +     ++F+ +  
Sbjct: 254 KQAILSCNSKNDLQQLKEQILDQAKQTPFFKTIDAITVFDYEAHKKHLQITENLFQKLSK 313

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + +R+++L +K+R D R+ E +R + +Q+ LL R HGS+LF RG TQ++  VTLG   + 
Sbjct: 314 QEMRSLILQEKIRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSES 373

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           + +D LS  Q   FM+HYNF P + G V R  APSRREIGHG LA +AI  VLP+   FP
Sbjct: 374 KIIDGLSDEQNKRFMLHYNFPPFSVGAVGRYTAPSRREIGHGTLAEKAISQVLPEEKDFP 433

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSD 478
           YT+R+VSEI ES+GSSS ATVC SSLALM +GVP+ K VAGI++GLV  ++ + ++ILSD
Sbjct: 434 YTIRVVSEILESNGSSSQATVCSSSLALMASGVPLKKAVAGISVGLVFDQETNKYVILSD 493

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH+G MD K+AGT+ GITA+QMD+KI GI   I+  A  QAK+GRLHIL +M++ 
Sbjct: 494 IQGLEDHVGDMDLKIAGTNKGITALQMDLKIQGIPFKILQEAFLQAKKGRLHILEQMNQT 553

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTVKIAS 597
           +S+ RL++ ++ P+V +M I P++IR++IG GGK+I  I+E   G K++I+ DG V +  
Sbjct: 554 ISQPRLEVSKYAPKVCMMQIKPEKIRDIIGSGGKIINQIIESHDGVKIDIEQDGRVFVMH 613

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD------FGAFVHFCGARDGLVHISQ 651
           S+L  ++     I S+    +V   Y+  +++ +        GA    C   +GL+H+++
Sbjct: 614 SNLETVKKTVAFIESLIQEIQVGTCYQASILRFLSDKQGKMIGAVAQVCPGIEGLIHVNK 673

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +   +  K +DV+K G+TV VK    ++RG+I
Sbjct: 674 M---KFQKITDVLKIGETVLVKCTKINERGRI 702


>gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
 gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
          Length = 731

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/743 (37%), Positives = 421/743 (56%), Gaps = 78/743 (10%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE   +    +  ++A+Q+ GAVL     TVVLATV      +  +DF PLTV Y E+
Sbjct: 3   YSIEVNNQVEIYDINKVAKQASGAVLLRVKNTVVLATV-AREDTQVSEDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA G+IPGGY++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E   
Sbjct: 62  TYAAGRIPGGYVKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            VV++ AAS AL LS +P   PV G +V YI+ ++V+NP   E + S LDL+V+G +D +
Sbjct: 122 QVVALNAASVALYLSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDEL 181

Query: 186 LMVEL------------------------------EANQLSEDVVLDAIIFGHNECKPVI 215
           LM+E+                              + N+ SED++++AI           
Sbjct: 182 LMIEMRSIPTEKDEIVPIALDPMMDPNLSGVIAMQDMNEFSEDLIVEAIAEAGKAILRAS 241

Query: 216 EAISKLAKMCAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDD 270
            A  +      KE   ++ K   ++E E     +++  K D++ +     K  R  ++  
Sbjct: 242 NAYEEAFSKHKKEDAQLELK--PEIENESVAVYLNEFYKNDVKAAINQMAKSERASELTK 299

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           + K++++   ++   W E  + +V    + K+VR  ++++ VR DGR+ + VR IS +  
Sbjct: 300 IAKQILTDEVAQKEGWEEEVVSNVLAKFKKKIVREQIINEGVRADGRELKEVRPISIETN 359

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCATGEV 388
           +L   HGS LF RG TQA+VV TLGT  D Q  D L   G   + FM +YNF   + GE 
Sbjct: 360 ILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGAVTDKFMFNYNFPGFSVGEA 419

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
           S + AP RRE+GHG LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG SLAL
Sbjct: 420 SPLKAPGRRELGHGNLAKRALAPSIDVNS--PYTIRLVSEILESNGSSSMASVCGGSLAL 477

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
             AGV   K VAG+AMGL+ +GD   +L+DI G EDH G MDFKVAG+  GITA+QMD+K
Sbjct: 478 RAAGVDTPKLVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIK 537

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           +GGIS +++  AL QA+ GRLHILN M K      +   +  P++E+ ++ P +I ++IG
Sbjct: 538 LGGISLDVLKEALLQAREGRLHILNLMEKANENISVN-EDILPKLELFSVDPGKIVDIIG 596

Query: 569 MGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIR---------------- 611
             GK I+ I+E+    +++D + G VKIA +  + ++AA++ I                 
Sbjct: 597 QAGKTIKEIIEKFDVAIDLDREKGEVKIAGAQKSSVDAAKDYIIQIVSKDNGKGFGGKRG 656

Query: 612 ------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
                   T    +   ++G+V  V++FGAF+   G  DGL+HIS++ T         +K
Sbjct: 657 GKDGKPHKTPEFNIGDEFEGEVKSVVEFGAFIGLPGGVDGLLHISKIKTP--------LK 708

Query: 666 EGDTVWVKLLDFDDRG-KIKLSM 687
            GD V VK+ +   +G KI LS+
Sbjct: 709 AGDKVKVKISE--QKGHKISLSL 729


>gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 719

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 270/729 (37%), Positives = 416/729 (57%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 242 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 302 N--LEITKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            I+  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 EILKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + IVE+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGPKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S++           + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKIKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
 gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
          Length = 981

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 235/700 (33%), Positives = 376/700 (53%), Gaps = 28/700 (4%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
           PL L TG +A+ +DG   A  G+T V+ T V  +       F PLTV+Y+++  A G+IP
Sbjct: 235 PLILSTGELAKLADGCATAQIGDTTVMVTAV-SKKNSSSPGFLPLTVDYRQKAAAAGRIP 293

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
             +LRRE   T+ EIL SRMIDRSIRPLF K +  +TQV+ N++  D    P V+S+  A
Sbjct: 294 TNHLRRERGVTDQEILTSRMIDRSIRPLFPKGFFYDTQVMCNLLAVDGLQDPGVISINGA 353

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGT-QDAVLMVELEA 192
           SAAL LS +P+ GP+   +V  I+ + ++NP  LD  + ++++ V+GT +  ++MVE  A
Sbjct: 354 SAALALSDVPWNGPIGAVRVGLIDEEVMINPTRLDMRRSTINMVVAGTKKSNLVMVEASA 413

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEEEMSQMIKE 250
           + + +   L A+  G  E + ++ +I KLA+   KE    +       ++ + + ++  E
Sbjct: 414 DNVLQTDFLKALKAGLKETQIIVRSIEKLAREHGKEKREYEPFGIPSPEILDSVRRLAAE 473

Query: 251 DLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
                       K+ R      +++  +S       + +   +   F  +   V R ++L
Sbjct: 474 QYHAVYTDPTHNKFSRDNAASQVREHHISTVREMFPNEDPSLLNDAFSIVAKDVFRKIIL 533

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++  R DGR+++ +RDI+  V L +  HGS+LF RG TQ    VT  + E     D +  
Sbjct: 534 EEDKRCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESALRADPVWQ 593

Query: 369 TQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                 +FM+HY F P AT E  R G  +RRE+GHG LA + + PV+P    +P+T+R+ 
Sbjct: 594 EDIREKNFMLHYEFPPYATNETGRTGGINRRELGHGALAEKGLRPVVPS--DYPFTIRLT 651

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------DFIILSD 478
           SE+ ES+GSSSMATVCG SLALMDAGVP+S PVAG+A+G++ + +        D  I++D
Sbjct: 652 SEVLESNGSSSMATVCGGSLALMDAGVPVSHPVAGVAIGVITETEPDDIFTIKDHRIVTD 711

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G ED++G MD K+AG+  GITA+Q D+K+  +   I+V A+Q     +  ILN M+  
Sbjct: 712 LLGIEDYMGDMDMKLAGSKKGITALQTDVKVP-LPMKIIVEAIQAGTAAKSKILNIMASS 770

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + + R      +P  E + +P  +    IG GG  ++ +  +TG  ++  D+    + + 
Sbjct: 771 IRKPRDLRKSNSPVTENLEVPVQRRSKFIGPGGYNLKKLRVETGVTISPVDETHFSVFAP 830

Query: 599 SLAEIEAAREMIRS-----ITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQL 652
           + + +  A+E I            E   IY   + ++ D G  V         L+H SQL
Sbjct: 831 TPSAMSEAKERIEQLLLEDKEPDLEFGGIYTATITELRDNGVLVKLYPAMPPTLLHNSQL 890

Query: 653 STERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
              +V   S + ++ G  + VK    D   GK++LS K +
Sbjct: 891 DQRKVNHPSALKMEVGQEIPVKYFGRDPVSGKMRLSRKAL 930


>gi|161833811|ref|YP_001598007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri GWSS]
 gi|187611304|sp|A8Z660|PNP_SULMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152206301|gb|ABS30611.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri GWSS]
          Length = 728

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/711 (36%), Positives = 420/711 (59%), Gaps = 39/711 (5%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETG +AR+++G+ +   G T +LATVV  +  K+   F PLT++Y+E+  A G
Sbjct: 14  DGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSAGG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGGY++RE RP + EIL  R++DR +RPLF   Y NE Q++I+++ +D+   P  ++ 
Sbjct: 74  KIPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDINVLPDGLAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDL----------FVSGT 181
           + AS A+ +S + F+GPV   ++  IN  +++NP ++E + S D            V GT
Sbjct: 134 LVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKS-DFYLDLDLDLDLIVGGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---------EPIVI 232
            + +++VE E  ++SE  +++AI+  H   +  IEA   L     K         E    
Sbjct: 193 NNYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFIKKKLYKIELYNY 252

Query: 233 DSKDFS------KLEEEMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEHSS 285
             K  +       ++E++  +  E++         K  R  +I ++ KK+  +F +E   
Sbjct: 253 YYKYINFNLNVFYIKEKIKFISYEEIDYIYKSCLFKQKRSNKIYNILKKIKFHFYNESIV 312

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
            N  EI  +F++I+ ++++ ++  + +R+DGR  + +R+I +QV  L   HGS++F RG+
Sbjct: 313 INNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRGE 372

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQA+  VTLG+  D   +D+     +  F +HYNF P +TGE+  +   SRREIGHG LA
Sbjct: 373 TQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHGNLA 432

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           +RA+  ++P T    YT+R+VS++ ES+GSSSMATVC S+LALMD+G+ + +PV+GI+MG
Sbjct: 433 QRALKNIIPTT----YTIRVVSDVLESNGSSSMATVCASTLALMDSGIIVKRPVSGISMG 488

Query: 466 LVKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           L+ +    + IILSD+ GDED++G MDFK+ GT+ G+TA QMD+KI GI+ +++   + +
Sbjct: 489 LIMNYLTGEAIILSDLLGDEDYIGDMDFKITGTEYGMTACQMDIKISGITYDVLSYTIFK 548

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK+G L I+ +M   LS  R  L     ++    IP   I  VIG GGK I+ I   T  
Sbjct: 549 AKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGGKRIQEIQVSTET 608

Query: 584 KVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            + I +    G ++I   +  +++ A   I++IT VP+V  IYK +V  +  FG FV   
Sbjct: 609 NIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVKNIKKFGVFVKIS 668

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
              +GL+HI ++S   + K    +++GD + VK L  +++  KIKLS K++
Sbjct: 669 KYLEGLLHIYEISW--LTKVESFIRKGDIISVKYLGKNNKFRKIKLSHKMI 717



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 91/217 (41%), Gaps = 17/217 (7%)

Query: 319 SETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTL--GTREDEQYVDSLSGTQRNDFM 375
            E  R +S + G L R  +GS++   G+T  +  V +   ++ED +++  L+   R  + 
Sbjct: 12  LEDGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIP-LTIDYREKYS 70

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
                     G + R G P   EI   RL  R + P+      +   ++I+  +   D +
Sbjct: 71  AGGKIP---GGYIKREGRPYDEEILTMRLVDRLLRPLF--KDNYYNEIQIMISLLSYDIN 125

Query: 436 SSMATVCG--SSLALMDAGVPISKPVAGIAMGLVKD----GDDFIILSDISGDEDHLGHM 489
                + G  +S A+  + +    PV+ + +  + D          +       D    +
Sbjct: 126 VLPDGLAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSDFYLDLDLDL 185

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           D  V GT++ I  ++ +M+   ISE  M+ A+ +A +
Sbjct: 186 DLIVGGTNNYIILVEGEMRE--ISEIEMMEAIVKAHK 220


>gi|293977923|ref|YP_003543353.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri DMIN]
 gi|292667854|gb|ADE35489.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Candidatus Sulcia muelleri DMIN]
          Length = 730

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/712 (36%), Positives = 422/712 (59%), Gaps = 39/712 (5%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            GR L +ETG +AR+++G+ +   G T +LATVV  +  K+   F PLT++Y+E+  A G
Sbjct: 14  DGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSAGG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGGY++RE RP + EIL  R++DR +RPLF   Y NE Q++I+++ +D+   P  ++ 
Sbjct: 74  KIPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDINVLPDGLAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-----------LDLFVSG 180
           + AS A+ +S + F+GPV   ++  IN  +++NP ++E + S           LDL V G
Sbjct: 134 LVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSYLDLDLDLDLDLDLIVGG 193

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK---------EPIV 231
           T + +++VE E  ++SE  +++AI+  H   +  IEA   L     K         E   
Sbjct: 194 TNNYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFIKKKLYKIELYN 253

Query: 232 IDSKDFS------KLEEEMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEHS 284
              K  +       ++E++  +  E++         K  R  +I ++ KK+  +F +E  
Sbjct: 254 YYYKYINFNLNVFYIKEKIKFLSYEEIDYIYKSCLFKQKRSNKIYNILKKIKFHFYNESI 313

Query: 285 SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
             N  EI  +F++I+ ++++ ++  + +R+DGR  + +R+I ++V  L   HGS++F RG
Sbjct: 314 VINNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNIWSKVDCLPGVHGSAIFTRG 373

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL 404
           +TQA+  VTLG+  D   +D+     +  F +HYNF P +TGE+  +   SRREIGHG L
Sbjct: 374 ETQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHGNL 433

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A+RA+  ++P T+    T+R+VS++ ES+GSSSMATVC S+LALMD+G+ + +PV+GI+M
Sbjct: 434 AQRALKNIIPTTS----TIRVVSDVLESNGSSSMATVCASTLALMDSGILVKRPVSGISM 489

Query: 465 GLVKD--GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           GL+ +    + IILSDI GDED++G MDFK+ GT+ G+TA QMD+KI GI+ +++   + 
Sbjct: 490 GLIMNYLTGEAIILSDILGDEDYIGDMDFKITGTEYGMTACQMDIKISGITYDVLSYTIF 549

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +AK+G L I+ +M   LS  R  L     ++    IP   I  VIG GGK I+ I   T 
Sbjct: 550 KAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGGKRIQEIQVSTE 609

Query: 583 AKVNIDDD---GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
             + I +    G ++I   +  +++ A   I++IT VP+V  IYK +V  +  FG FV  
Sbjct: 610 TNIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVKNIKKFGVFVKI 669

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
               +GL+HI ++S   + K    +++GD + VK L  +++  KIKLS K++
Sbjct: 670 SKYLEGLLHIYEISW--LTKVESFLRKGDIISVKYLGKNNKFRKIKLSHKMI 719



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 19/219 (8%)

Query: 319 SETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTL--GTREDEQYVDSLSGTQRNDFM 375
            E  R +S + G L R  +GS++   G+T  +  V +   ++ED +++  L+   R  + 
Sbjct: 12  LEDGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIP-LTIDYREKYS 70

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
                     G + R G P   EI   RL  R + P+      +   ++I+  +   D +
Sbjct: 71  AGGKIP---GGYIKREGRPYDEEILTMRLVDRLLRPLF--KDNYYNEIQIMISLLSYDIN 125

Query: 436 SSMATVCG--SSLALMDAGVPISKPVAGIAMGLVKD------GDDFIILSDISGDEDHLG 487
                + G  +S A+  + +    PV+ + +  + D      G + I  S +  D D   
Sbjct: 126 VLPDGLAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSYLDLDLDLDL 185

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
            +D  V GT++ I  ++ +M+   ISE  M+ A+ +A +
Sbjct: 186 DLDLIVGGTNNYIILVEGEMRE--ISEIEMMEAIVKAHK 222


>gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
 gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
          Length = 735

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 279/747 (37%), Positives = 417/747 (55%), Gaps = 82/747 (10%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE   +    +  ++A+Q+ GA L     TVVLATV      +  +DF PLTV Y E+
Sbjct: 3   YSIEVNNQVEIYDINKVAKQASGAALLRVKNTVVLATV-AREDTQVSEDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA G+IPGGY++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E   
Sbjct: 62  TYAAGRIPGGYVKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            VV++ AAS AL LS +P   PV G +V YI+ ++V+NP   E + S LDL+V+G +D +
Sbjct: 122 QVVALNAASVALYLSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKDEL 181

Query: 186 LMVEL-------------------------------EANQLSEDVVLDAIIFGHNECKPV 214
           LM+E+                               + N+ SED++++AI          
Sbjct: 182 LMIEMRSIATQKDEMMPIALDPMMDPNLGGEVIATQDMNEFSEDLIVEAIAEAGKAILRA 241

Query: 215 IEAISKLAKMCAKEPIVIDSKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQID 269
             A  +      KE   ++ K   ++E E     + +  K +++ +     K  R  +++
Sbjct: 242 SNAYEEAFSQHKKEDAQLELK--PEIENESIAVYLDEFYKNEVKAAINQMAKSERAGELN 299

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            + K++++   ++   W E  + +V    + K+VR  ++++ VR DGR  + VR IS + 
Sbjct: 300 KIAKQILTDEVAQKEGWEEEVVSNVLAKFKKKIVREQIINEGVRADGRGLKDVRPISIET 359

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCATGE 387
            +L   HGS LF RG TQA+VV TLGT  D Q  D L   G   + FM +YNF   + GE
Sbjct: 360 NILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGAVTDKFMFNYNFPGFSVGE 419

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
            S + AP RRE+GHG LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG SLA
Sbjct: 420 ASPLKAPGRRELGHGNLAKRALAPSIDSDS--PYTIRLVSEILESNGSSSMASVCGGSLA 477

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           L  AGV   K VAG+AMGL+ +G+   +L+DI G EDH G MDFKVAG+  GITA+QMD+
Sbjct: 478 LRAAGVDTPKLVAGVAMGLIFEGEKHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDI 537

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+GGIS +++  AL QA  GRLHILN M        +   E  P++E+ ++ P +I ++I
Sbjct: 538 KLGGISLDVLKEALLQACEGRLHILNLMETANKNISVN-EEILPKLELFSVDPGKIVDII 596

Query: 568 GMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIR--------------- 611
           G  GK I+ I+E+    +++D + G VKIA +  + ++AA++ I                
Sbjct: 597 GQAGKTIKEIIEKFDVAIDLDREKGEVKIAGAQKSSVDAAKDYIIQIVSKDGGKGFGGRR 656

Query: 612 ----------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                       T    +   ++G+V  V++FGAF+   G  DGL+HIS++ T       
Sbjct: 657 GGRDGKEGRAHKTPEFNIGDEFEGEVKSVVEFGAFIGLPGGVDGLLHISKIKTP------ 710

Query: 662 DVVKEGDTVWVKLLDFDDRG-KIKLSM 687
             +K GD V VK+ +   +G KI LS+
Sbjct: 711 --LKAGDRVKVKISE--QKGHKISLSL 733


>gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 719

 Score =  591 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/729 (36%), Positives = 414/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+ + AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMGLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 242 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 302 N--LEITKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            I+  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 EILKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + IVE+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGPKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis]
 gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis]
          Length = 710

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/709 (33%), Positives = 378/709 (53%), Gaps = 35/709 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R LK  TG++A  +DG+ +  Y +T VL T +  +   +   F PL V+Y+E+  A   I
Sbjct: 2   RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENS-FLPLVVDYKEKASAACLI 60

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  +LRR+    E EIL+ R IDRS+R LF K Y  +TQ+I +++  D  ++P VV++  
Sbjct: 61  PTTFLRRDLLANEREILVCRRIDRSVRSLFMKGYTYDTQIISHLLAADRFNNPDVVAVNG 120

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEA 192
           ASA+L LS +P+ GPV   ++  ++GQ V+NP   + +   LDL V+ ++  ++MVE  A
Sbjct: 121 ASASLALSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQLDLVVTSSESKIVMVEGFA 180

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID----SKDFSKLEEEMSQMI 248
            ++ ++ + +AI    +E +P+I+AI +L     KE    D    S+  S   EE     
Sbjct: 181 KEVPDERLCEAIKLAFSEAQPIIQAIKELRSYAGKEKKHFDIISPSQQLSDAVEEWVSYN 240

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
           +   + S     +  R  +I  L+ + V  F  +      G I   F  +   V R  +L
Sbjct: 241 RFTFKTSNVSFFQLQRDDRIFGLRDECVEIFQDQFPDSGPGLIEQAFNAVNKSVFRANIL 300

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS- 367
           +K  R DGR  + +R I   + L +  HGSSLF RG+TQ     T G+      VD++S 
Sbjct: 301 EKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISE 360

Query: 368 ---GTQRNDFMMHYNFLPCATGEVS-RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              G++   FM+HY F P +T EV  R G+  RREIGHG LA RA+ PVLP     P+TL
Sbjct: 361 AVGGSKEKQFMLHYEFPPFSTNEVKQRRGSFDRREIGHGALAERALVPVLPDEL--PFTL 418

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----------KDGDDF 473
           R+ +E+  S+GSSS+A+ C  SLA+MDAGVPI   VAG A GLV          +D D++
Sbjct: 419 RLTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDNY 478

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +L+DI G ED+LG MDFK+AGT  GITA+Q D K+ G+   I+  A+++    R  +L+
Sbjct: 479 QLLTDILGIEDYLGDMDFKIAGTRQGITALQADFKVPGLPVAIVEEAIRRCSVDRAKVLD 538

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            M +V+  +R    +  P    + +P  +   +IG GG VIR + ++ G  ++  ++   
Sbjct: 539 VMEEVIPIAREFKKDNIPVSGSVRVPLSKRGRLIGTGGMVIRALQQELGVSIDQVEEEEF 598

Query: 594 KIASSSLAEIEAAREM----------IRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-GA 642
            + +      + A                +T       IY+G++V++  +G  +      
Sbjct: 599 LVFAPDQTTYDEAISKINELLVDTNIFEELTSRLTEGAIYEGKIVEMRAYGLMLELFADC 658

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              L+H+ +L   RV +   +  K GD+V VK L  D++G++ +S K +
Sbjct: 659 PTVLLHVRELDHARVHRPEMLGFKVGDSVSVKYLGIDNKGRLNISRKAL 707


>gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 719

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 269/729 (36%), Positives = 413/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 242 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  LL   H
Sbjct: 302 N--LEIAKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNLLPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSID--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ +   F +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDSKFAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKEIVVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA +   +I+AA++ I +IT                  E
Sbjct: 597 KEIIEKFGVSIDLDREKGEVKIAGNQNEQIKAAKDYIINITSSQKGTKKGSKDKDISDFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           RM1221]
 gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           RM1221]
 gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 719

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 269/729 (36%), Positives = 413/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  ++ ++   +    ++ ++ +     K  R  +++ + K++ 
Sbjct: 242 EEAFSKHKKNSQIELKNEIEYPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIS 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 302 N--LEIAKEWSEESVLNTLAKVKRKLIRGQILNEGKRADGRSLNEVRPISIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + IVE+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIVEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus
           13826]
 gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           concisus 13826]
          Length = 732

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/741 (37%), Positives = 406/741 (54%), Gaps = 73/741 (9%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE   +    +  ++A+Q+ GAVL     TVVLATV     ++  +DF PLTV Y E+
Sbjct: 3   YSIEVNNQVEIFDLNKVAKQASGAVLLRVKNTVVLATV-AREDVQVEEDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P + E L +R+IDRS+RPLF K Y   TQ+++ V+  D E   
Sbjct: 62  AYAAGKIPGGYVKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            VVS+ AAS AL LS +P   PV G +V YI+ ++V+NP   E  Q ++DL+V+GT+D +
Sbjct: 122 QVVSLNAASVALYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKQSAIDLYVAGTKDEL 181

Query: 186 LMVELE--------------------------------ANQLSEDVVLDAIIFGHNECKP 213
           LM+E+                                  N+ SED +++AI F       
Sbjct: 182 LMIEMRSLPQQTTQLIPMVAIEPMIDPSLSDSMAQKQVMNEFSEDKMVEAIDFAGKAILR 241

Query: 214 VIEAISKLAKMCAKEPIVIDSKDFSKLEEE---MSQMIKEDLRVSCFIPEKYVRCKQIDD 270
              A  +  K   KE   ++ K   + E     + +  K +++ +     K  R  ++  
Sbjct: 242 ASSAYEEAFKEHKKEDAALELKPEIENENIAIYIDKFYKAEVKNAINQMAKSERASELGK 301

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           + K++ S   ++   W+E  I +V    + K+VR  ++++ +R DGR  E VR IS +  
Sbjct: 302 IAKQISSDEVAQKEGWDEAVITNVLGKYKKKIVREQIINEGIRADGRGLEEVRPISIETN 361

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEV 388
           +L   HGS LF RG TQA+VV TLGT  D Q  D L+        FM +YNF   + GE 
Sbjct: 362 VLPNAHGSCLFTRGQTQALVVATLGTDSDAQMYDILTEKAPLVEKFMFNYNFPGFSVGEA 421

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
           S + AP RRE+GHG LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG SLAL
Sbjct: 422 SPLKAPGRRELGHGNLAKRALAPSIDLAS--PYTIRVVSEILESNGSSSMASVCGGSLAL 479

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
             AGV   K VAG+AMGL+ +G+   +L+DI G EDH G MDFKVAGT  GITA+QMD+K
Sbjct: 480 RAAGVNTQKLVAGVAMGLIFEGEKHAVLTDIMGLEDHDGDMDFKVAGTSDGITALQMDIK 539

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           +GGIS  ++  AL QAKRGR HIL  M++      +   +  P++E+  + P +I ++IG
Sbjct: 540 LGGISLEVLKEALYQAKRGREHILALMTQADKNIEIN-EDVLPKLELFNVDPSKIVDIIG 598

Query: 569 MGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------- 617
             GK I+ I+E+    +++D + G VKIA  +   ++AA++ I SIT             
Sbjct: 599 QAGKTIKEIIEKFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRSFGKKPF 658

Query: 618 -----------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                       +   + G V  V+DFG F+      DGL+HIS        K    +  
Sbjct: 659 KHDKDRVKPTFNIGDEFTGSVKSVVDFGVFIELKDGVDGLLHIS--------KIKSPLNV 710

Query: 667 GDTVWVKLLDFDDRGKIKLSM 687
           GD V V + +     KI LS+
Sbjct: 711 GDQVKVCVSE-QKGNKISLSL 730


>gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus
           525.92]
 gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           curvus 525.92]
          Length = 735

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 282/744 (37%), Positives = 414/744 (55%), Gaps = 76/744 (10%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE   +    +  ++A+Q+ GAV+     TVVLATV     ++  +DF PLTV Y E+
Sbjct: 3   YSIEVNNQVEIFDLNKVAKQAAGAVMLRVKNTVVLATV-ARDDVQVEEDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGGY++RE++P + E L +R+IDRS+RPLF K Y   TQ+++ V+  D E   
Sbjct: 62  AYAAGRIPGGYVKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            VV + AAS AL LS +P   PV G +V YI+ ++V+NP   E + S LDL+V+GT+D +
Sbjct: 122 QVVGLNAASVALYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKDEL 181

Query: 186 LMVEL--------------------------------EANQLSEDVVLDAIIFGHNECKP 213
           LM+E+                                + N+ SED +++AI F       
Sbjct: 182 LMIEMRSIAQQSSQIIPIIAIDPMMDPSLNDSITQKQDMNEFSEDRIVEAIDFAGKAILR 241

Query: 214 VIEAISKLAKMCAKEPIVIDSKDFSKLEEE---MSQMIKEDLRVSCFIPEKYVRCKQIDD 270
              A  +  K   KE  +++ K   + E     + +  K D++ +     K  R  ++  
Sbjct: 242 ASNAYEEAFKEHKKEDAILELKPEIENENIAIYIDKFYKNDVKNAINQMAKSERASELGK 301

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           + K++ S   ++   W EG I +V    + K+VR  ++++ VR DGR  + VR IS +  
Sbjct: 302 IAKQIASDEVAQKEGWEEGVISNVLGKYKKKIVREQIINEGVRADGRALDEVRPISIETN 361

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEV 388
           +L   HGS LF RG TQA+VV TLGT  D Q  D L+        FM +YNF   + GE 
Sbjct: 362 VLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTALIEKFMFNYNFPGFSVGEA 421

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
           S + AP RRE+GHG LA+RA+ P +   +  PYT+R+VSEI ES+GSSSMA+VCG +LAL
Sbjct: 422 SPLKAPGRRELGHGNLAKRALAPSIDINS--PYTIRLVSEILESNGSSSMASVCGGALAL 479

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
             AGV   K VAG+AMGL+ +GD   +L+DI G EDH G MDFKVAG+  GITA+QMD+K
Sbjct: 480 RAAGVDTQKLVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSSDGITALQMDIK 539

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           +GGIS  ++  AL QAKRGR HILN M +  S+  +   +  P++E+ ++ P +I ++IG
Sbjct: 540 LGGISLEVLKEALYQAKRGREHILNLMHQADSKIEVN-EDVLPKLELFSVDPSKIVDIIG 598

Query: 569 MGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSIT---------DVPE 618
             GK I+ I+E+    +++D + G VKIA  +   ++AA++ I SIT           P 
Sbjct: 599 QAGKTIKEIIERFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRGFGKKPH 658

Query: 619 VNKI---------------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            +                 + G V  V+DFGAF+      DGL+HIS++ T         
Sbjct: 659 GHDRRDKDRQKPTFNIGDEFDGVVKSVVDFGAFIELKDGVDGLLHISKIKTP-------- 710

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSM 687
           +  GD + V + +     KI LS+
Sbjct: 711 LNVGDRLKVCVSE-QKGNKISLSL 733


>gi|118474584|ref|YP_892413.1| polynucleotide phosphorylase/polyadenylase [Campylobacter fetus
           subsp. fetus 82-40]
 gi|187610245|sp|A0RQD0|PNP_CAMFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118413810|gb|ABK82230.1| polyribonucleotide nucleotidyltransferase [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 728

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 283/737 (38%), Positives = 417/737 (56%), Gaps = 70/737 (9%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            IE   +    +  ++A+Q+ GAVL     TVVLA  V     +  +DF PLTV Y E+ 
Sbjct: 4   SIEVNNQIEIFDLNKVAKQAAGAVLMRVKNTVVLA-AVAREDAQVEEDFLPLTVQYIEKQ 62

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGGY++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E    
Sbjct: 63  YAAGRIPGGYVKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSSDPEVDLQ 122

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           VVS+ AAS AL LS +P   PV G +V +ING++V+NP   E + S LDL+V+G +D +L
Sbjct: 123 VVSLNAASVALYLSDIPVNSPVCGVRVGHINGKFVINPSNSELKNSALDLYVAGVKDELL 182

Query: 187 MVEL--------------------------------EANQLSEDVVLDAIIFGHNECKPV 214
           M+E+                                + N+ SED+++DAI          
Sbjct: 183 MIEMRSLPNEQNEIVPVIAIDPMMDPSLNEGFVSRQKMNEFSEDLMIDAIKLATEAILKG 242

Query: 215 IEAISKLAKMCAKEPIVIDSKDFSKLEEE---MSQMIKEDLRVSCFIPEKYVRCKQIDDL 271
             A  +  +   KE   ++ K   + E     +++  KED++ +     K  R  ++  +
Sbjct: 243 SNAYEEAFRNYKKETANLEYKPEIENENVAIYINEFYKEDVKAAINQMAKSERASELSKI 302

Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331
            K++     ++   W+E  I ++    + K+VRT ++  K R DGR  + VR IS +  +
Sbjct: 303 AKQIALSEVAQKEGWDEALISNILGKYKKKLVRTGIIKDKKRADGRGLKDVRPISIETNI 362

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVS 389
           L   HGS LF RG TQA+VV TLGT  D Q  + L+      + FM +YNF   + GE S
Sbjct: 363 LPNAHGSCLFTRGQTQALVVTTLGTDNDAQMSEYLTEKNAVADKFMFNYNFPGFSVGEAS 422

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
            + AP RRE+GHG LA+RA++P +   +  PY+LR+VSEI ES+GSSSMA+VCG SL+L 
Sbjct: 423 PLKAPGRRELGHGNLAKRALYPSIDLNS--PYSLRVVSEILESNGSSSMASVCGGSLSLR 480

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
            AGV   K VAG+AMGLV +GD+  +L+DI G EDH G MDFKVAG+  GITA+QMD+K+
Sbjct: 481 AAGVETIKLVAGVAMGLVFEGDEHAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKL 540

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
           GGIS +++  AL QAK  R HILN M K   E  +   +  P++E+ ++ P +I ++IG 
Sbjct: 541 GGISLDVLKEALYQAKEARDHILNLMVKADEEIVVN-EDVLPKLELFSVDPSKIVDIIGQ 599

Query: 570 GGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE---------- 618
            GK I+ I+E+    +++D D G VKIA     ++EAA++ I  IT   +          
Sbjct: 600 AGKTIKEIIEKFEVSIDLDRDKGEVKIAGGERQKVEAAKDYIIQITQKEQRSGGFRNKRE 659

Query: 619 --------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                   +   ++G++ K+  FGAF+      DGL+HIS++ +         +KEGDT+
Sbjct: 660 YKNVTPFNIGDEFEGEIKKMAAFGAFISLRDGVDGLLHISKIVSP--------LKEGDTI 711

Query: 671 WVKLLDFDDRGKIKLSM 687
            VK+ D    GKI L +
Sbjct: 712 KVKVSDI-KGGKISLDL 727


>gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 719

 Score =  589 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/729 (36%), Positives = 413/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 242 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 302 N--LEIAKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LTENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|328784963|ref|XP_396984.3| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Apis mellifera]
          Length = 747

 Score =  589 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/709 (34%), Positives = 391/709 (55%), Gaps = 53/709 (7%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G  +KL TG+ AR + G+V+AT G+T ++ TVV +  L +     PLTVNY+++  A+G
Sbjct: 49  NGSEIKLSTGKYARFTSGSVIATVGDTSIMTTVVRNNVLSNNS-IIPLTVNYRQKAAAIG 107

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +IP  + RRE   T+NEIL+SR+IDRS+RPLF   Y  ETQ++ N++  D  ++P V+S+
Sbjct: 108 RIPTNFFRRELGYTDNEILVSRIIDRSLRPLFQPKYSYETQIVCNLLAIDGINNPDVLSI 167

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG-TQDAVLMVE 189
            AASAAL +S +P+ GPV   ++  I+  Y++NP   E  Q  L+L +S  +++ ++M+E
Sbjct: 168 NAASAALSISDIPWNGPVAAVRIGLIDNTYIINPSKRELQQSKLNLVLSCISKNLIVMIE 227

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS--KLEEEMSQM 247
             AN + E  +  AI  G  EC+ +I +IS+L K   K  + I S D S   +EE + + 
Sbjct: 228 GSANDILEPELRKAIKLGIKECQTIINSISELQKQIGKPKLNIVSDDESNNDVEEFVREF 287

Query: 248 IKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
           +  +LR   +    +K  R   I DL+ +M+    +  S + E  +  +F +I  ++ R+
Sbjct: 288 VSNELREIFNYHFHDKISRDNAIFDLRNRMLEKIKNHDSKYIENALK-IFSNISKEIFRS 346

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ + + R DGR    +R+IS QV L Q  HGS+ F RG TQ +  VTL + E    +D+
Sbjct: 347 LIFETEKRCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTVTLDSIESSLKLDT 406

Query: 366 L----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +    SG +  +F +HY F P A  E  ++    RREIGHG LA + +  V+P    +P+
Sbjct: 407 ISMLSSGIKEKNFFLHYEFPPYAINETGKLTGIDRREIGHGALAEKGLQAVIP--QNYPF 464

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--------GDDF 473
            +R+ SE+ ES+GSSSMA++CG SLALM+AG+PIS PVAG+AMGLV +          D+
Sbjct: 465 AIRLTSEVLESNGSSSMASICGGSLALMNAGIPISSPVAGVAMGLVCNNTNTADLKETDY 524

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            IL+DISG EDHLG MDFK+AGT  G TA Q D+K+ GI   ++     +          
Sbjct: 525 KILTDISGIEDHLGDMDFKIAGTKRGFTAFQADIKVPGIPFKVITKTTNK---------- 574

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
                         +  P ++ + +P  Q R+ +G+GG  ++ I+ +TG  +   +D   
Sbjct: 575 -------------KKNKPVLDTIEVPIHQRRHFLGIGGLNLKKILHETGVNIYSVNDTVF 621

Query: 594 KIASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLV 647
            I + +   ++ A+ MI       +        IY  ++ ++ + G  V         L+
Sbjct: 622 SIFAPNQNAMDEAKYMINKILETEVEPTLIFGDIYTAKITEIREIGVMVTLYPTMMPTLL 681

Query: 648 HISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
             SQL   ++     + +  GD + VK    D   G+I+LS K++   T
Sbjct: 682 PNSQLDQRKIHHPDVLGLNVGDEIKVKYFGRDPVNGRIRLSRKILQIPT 730


>gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 719

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/729 (36%), Positives = 413/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP   E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNGELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 242 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 302 N--LEIAKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYIIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S++           + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKIKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|266619741|ref|ZP_06112676.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
 gi|288868702|gb|EFD01001.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
          Length = 551

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 219/558 (39%), Positives = 337/558 (60%), Gaps = 17/558 (3%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF   +  +E AGR L +E GR+A+Q+ GA L  YG+TVVL+T       ++G DFFPL+
Sbjct: 1   MF--KSYSMELAGRTLTVEVGRVAKQASGAALMHYGDTVVLSTATASDKPREGIDFFPLS 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+E+ YAVGKIPGG+ +RE + +EN IL SR+IDR +RPLF K Y+N+  +   VM  
Sbjct: 59  VEYEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSV 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           D + SP + +M+ ++ A  +S +PF+GP    Q+  ++G+ V+NP   + Q   + L V+
Sbjct: 119 DQDCSPELTAMLGSAIATCISDIPFDGPCATTQIGMVDGELVVNPTQAQKQASDMALTVA 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP-----IVIDS 234
            T++ V+M+E  AN++ ED++++AI   H+  + VI+ I  +   C K         +  
Sbjct: 179 STREKVIMIEAGANEVPEDIMIEAIFKAHSVNQEVIKFIDTIVAECGKPKHSYISCAVPE 238

Query: 235 KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + F+ ++E +      ++ V+ F  +K  R + I  +  K+   F+ +        +   
Sbjct: 239 ELFAAIKEIVPPA---EMEVAVFTDDKQTREENIRTITAKLEEAFADKEE--WLAVLGEA 293

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
               Q K VR ++L    R DGR  + +R ++A++ +L R HGS++F RG TQ + + TL
Sbjct: 294 VYQYQKKTVRKMILKDHKRPDGRAIDQIRPLAAEIDMLPRVHGSAMFTRGQTQILNICTL 353

Query: 355 GTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               + Q +D +        +M HYNF   + GE      P RREIGHG LA RA+ PVL
Sbjct: 354 APLSESQRLDGIDDMETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVL 413

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GD 471
           P   +FPY +R VSE  ES+GS+S A++C SS++LM AGVPI   VAGI+ GLV     D
Sbjct: 414 PSEEEFPYAIRTVSETMESNGSTSQASICSSSMSLMAAGVPIKSAVAGISCGLVTGDTDD 473

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+I+L+DI G ED  G MDFKV GT  GITA+QMD+KI G++  I+  A+++ +  R++I
Sbjct: 474 DYIVLTDIQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRRTREARIYI 533

Query: 532 LNE-MSKVLSESRLQLGE 548
           L+E M+K ++E R ++G+
Sbjct: 534 LDEVMAKAIAEPRKEVGK 551


>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
          Length = 778

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 267/754 (35%), Positives = 405/754 (53%), Gaps = 122/754 (16%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + +ETG I RQ+  +V+ T GETV                                    
Sbjct: 14  ILVETGHIGRQASASVMVTDGETV------------------------------------ 37

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
                         L+ R+IDR +RP   K +  ETQ++  V  +D   SP  +++ AA 
Sbjct: 38  --------------LVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAG 83

Query: 136 AAL-------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGT 181
            A+              LS +P +  + G +V  IN Q+V+NP  ++ D   LDL ++GT
Sbjct: 84  VAICSCSYLPQSFLCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGT 143

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
             A+LM+E   + L+E+ +L A+  G    + + +AI  L + C K+ +         +L
Sbjct: 144 DSAILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKMFDAIDLPPPEL 203

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH----------------- 283
              +  +  ++L  +  I EK +R K +  L++K+++  S +                  
Sbjct: 204 YRHVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADV 263

Query: 284 -------------------------------SSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
                                            ++E ++  VF+++ +K +R  +++   
Sbjct: 264 IEEEDEDEVIVDGEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGGK 323

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQR 371
           R DGR    +R I++Q GLL R HGS+LF RG+TQA+ VVTLG  +  Q +D+L    + 
Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 383

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             F + Y F P + GEV R+GAP+RREIGHG LA RA+ P+LP    FPYT+R+ S ITE
Sbjct: 384 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITE 443

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF------IILSDISGDEDH 485
           S+GSSSMA+VCG  LAL DAGVPI  PVAGIAMGLV D  +F      +ILSDI+G ED 
Sbjct: 444 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDA 503

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G MDFKVAG ++GI+A QMD+K+ GI+  IM  AL QA+ GR HILNEMSK        
Sbjct: 504 SGDMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAKV 563

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIE 604
           L  + P + +M + P+++  +IG GGK I+ I+E+TG   ++  DDGTVKI +  L+ +E
Sbjct: 564 LSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSLE 623

Query: 605 AAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            ++ +I ++T VP+V +IY+   +K +  +GAFV     R+GL HIS+LS+  +AK  D 
Sbjct: 624 KSKAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDA 683

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K GD + VKL++ +D+G+++LS + +  +  + 
Sbjct: 684 FKVGDRIDVKLIEINDKGQLRLSSRALLPDANQE 717



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 98/230 (42%), Gaps = 31/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV-YDRSLKDGQDFFPLT-------VNYQE 65
           RP+  + G + R + G+ L T GET  LA V   D  +    D    T       + Y  
Sbjct: 334 RPINSQCGLLPR-AHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQYTF 392

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLE 123
              +VG++      R   P   EI    + +R++ P+    + +    +V   + + +  
Sbjct: 393 PPSSVGEVG-----RIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITESNGS 447

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--------NGQYVLNPRL---DEDQG 172
           SS  + S+     AL  +G+P + PV G  +  +        +G+ ++   +   ++  G
Sbjct: 448 SS--MASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAEDASG 505

Query: 173 SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK 220
            +D  V+G ++ +   +++     ++  ++  A++   +  K ++  +SK
Sbjct: 506 DMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSK 555


>gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 718

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 269/729 (36%), Positives = 414/729 (56%), Gaps = 63/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ G VL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQATG-VLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 60

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 61  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 120

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 121 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 180

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 181 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 240

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 241 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKKAINQMAKSERASELNKIAKEIL 300

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  I++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 301 N--LEIAKDWSEESILNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAH 358

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 359 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 418

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 419 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 476

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  GITA+QMD+K+GGI +
Sbjct: 477 SLKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGIDQ 536

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 537 ETLKQALYQAKEGRIHILNIMEEATKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 595

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 596 KEIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISDFE 655

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S++           + E  ++ VK+ +  
Sbjct: 656 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKIKHLD-------LSENQSLKVKISEI- 707

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 708 KNGKISVDL 716


>gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 719

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 266/729 (36%), Positives = 413/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  ++ ++   +    ++ ++ +     K  R  +++ + K++ 
Sbjct: 242 EEAFSKHKKNSQIKLKNEIEYPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIS 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR I+ +  +L   H
Sbjct: 302 N--LEIAKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPINIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   +  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKKIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 719

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 267/729 (36%), Positives = 413/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G+++VLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSIVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 242 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 302 N--LEITKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPISIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYIIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+ G  +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + + ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 719

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 266/729 (36%), Positives = 412/729 (56%), Gaps = 62/729 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE           ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFRKGYAYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  ++ ++   +    ++ ++ +     K  R  +++ + K++ 
Sbjct: 242 EEAFSKHKKNSQIELKNEIEYPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIS 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR I+ +  +L   H
Sbjct: 302 N--LEIAKDWSEESVLNTLAKVKRKLIREQILNEGKRADGRSLNEVRPINIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + + + +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKYAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   +  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKKIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI----------- 622
           + I+E+ G  +++D + G VKIA S   +I+AA++ I +IT   +  K            
Sbjct: 597 KEIIEKFGVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFK 656

Query: 623 ----YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
               ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ +  
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LSENQSLKVKISEI- 708

Query: 679 DRGKIKLSM 687
             GKI + +
Sbjct: 709 KNGKISVDL 717


>gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 720

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 265/719 (36%), Positives = 407/719 (56%), Gaps = 61/719 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 62  AYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYTYPTQIVVMVLSADPKVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E Q S LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDEL 181

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+LSED +L+A+            A 
Sbjct: 182 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQKAILNGSNAY 241

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  +  ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 242 EEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQIKEAINQMAKSERASELNKIAKEIL 301

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  +++    ++ K++R  +L++  R DGR    VR IS +  +L   H
Sbjct: 302 N--LEIAKDWSEESVLNTLAKVKHKLIREQILNEGKRADGRSLNEVRPISIETNILPNAH 359

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 360 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAP 419

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P L     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 420 GRRELGHGNLAKRALYPSLD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 477

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + +   +L+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 478 SLKLVAGVAMGLIFEDNKHAVLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 537

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 538 ETLKQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 596

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP---------------E 618
           + I+E+    +++D + G VKIA S   +I+AA++ I +IT                  E
Sbjct: 597 KEIIEKFDVSIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFE 656

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + ++G V K+  FGAFV      DGL+H S+            + E  ++ VK+ + 
Sbjct: 657 LGQEFQGIVKKIAPFGAFVELKNGVDGLLHSSKSKHLN-------LSENQSLKVKISEI 708


>gi|170039801|ref|XP_001847711.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167863390|gb|EDS26773.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 759

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 231/672 (34%), Positives = 376/672 (55%), Gaps = 28/672 (4%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD--FFPLTVNYQERTYAV 70
           GR +++ +G+ AR +DG  + T G+T V+ T V  +    G +  F PL V+Y+++  A 
Sbjct: 51  GRVVRISSGKYARFADGCSVVTVGDTAVMVTAVARQKPAGGSNASFLPLVVDYRQKAAAA 110

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IP  +LRRE  P+E EIL +R++DRS+RPLF   ++ +TQ++ N++  D  + P V +
Sbjct: 111 GRIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQA 170

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ-DAVLMV 188
           + AASAAL LS +P+ GPV   +V  ++ + ++NP   E Q  +LDL VS T+ + V+M+
Sbjct: 171 INAASAALSLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLVVSATKQNLVVML 230

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLEEEMSQ 246
           E   N ++E+ +  AI  G  E + +I  I KL K   K    ++   +   ++E  +  
Sbjct: 231 EGRGNIVNENELRMAIKKGTQEAQLIINGIEKLQKSHGKPKRALEPLPQADEEIEAAVRT 290

Query: 247 MIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
           M +  LR     F  +K+ R + +   +   +    S + S +   I   F      V R
Sbjct: 291 MSEMRLREIFRDFSHDKFSRDQAVSKTRTDTIDKVWSSYPSVDPALIGECFNKFTKSVFR 350

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++  R DGR  + +R IS+ V + +  HGS+LF RG TQ    V L ++E    +D
Sbjct: 351 EMVFEENRRCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLD 410

Query: 365 SLS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            ++    G +  +F +HY F P ATGE  ++G   RREIGHG LA + + P++P     P
Sbjct: 411 PITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLLPIIPNDN--P 468

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--------D 472
           +T+R+ +E+ ES+GSSSMATVC  S+ALMDAG+P+ +  AG+A+GL+   +        D
Sbjct: 469 FTIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKHLQD 528

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + IL+D+ G ED+LG MD KVAGT  G+TA+Q D+K+ GI   +++ +LQ+A   R  IL
Sbjct: 529 YRILTDLLGIEDYLGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFKIL 588

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + M++ +S  R    +  P  + + I P Q   ++G GG  IR +  +TG +++ +D+  
Sbjct: 589 DLMNESISTVRTLKKDCWPVTDKLQIEPHQRSKLLGPGGINIRRLYLETGVQLSQEDENQ 648

Query: 593 VKIASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGL 646
            +I + S A +  A+E +            E   IY  ++V++ D G  V         L
Sbjct: 649 FRIFAPSEAAMHEAKEYLETLMKTEKVPDLEFGAIYTAKIVEMKDTGVMVTLYPSMSPAL 708

Query: 647 VHISQLSTERVA 658
           +H SQL   +V+
Sbjct: 709 LHNSQLDQRKVS 720


>gi|299115591|emb|CBN75793.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 834

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 270/743 (36%), Positives = 405/743 (54%), Gaps = 51/743 (6%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           V  + +   GR L  ETG++ RQ+ GAV+A  GETVV +T   DR      +F PL V+Y
Sbjct: 23  VSVLRVTVGGRDLSFETGKVGRQASGAVMARDGETVVYSTACTDRKT-TTSNFSPLRVDY 81

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            ER  A G   GGY +R+ R ++ E L+SR++DR +RP     + +ETQ++  V+ +D  
Sbjct: 82  MERFSAAGMTSGGYNKRDGRASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTV 141

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQ-GSLDLFVSGT 181
             P  +++ AASAAL LS +P    + G  V     G+ V+NP +       L+L ++GT
Sbjct: 142 HPPVPLAITAASAALALSNVPLVRAIAGVTVGMDSEGELVVNPEISVAAMSPLNLTIAGT 201

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-L 240
            D VLM+E E++ + E+ ++ AI  GH   + +   I + +++  KE      +   + L
Sbjct: 202 ADGVLMIEGESDFVCEEDMMRAIEVGHAAVRDLCLGIEEWSEVAGKEKKTDTLRLPPEGL 261

Query: 241 EEEMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFS-SEHSSWNEG-----EIV 292
           +E M +  ++ +  + F     K  +   + +L          +E      G     ++ 
Sbjct: 262 DEIMERDFQDKVDHALFESGEGKDDQSSAMRELTGLTREALQVAEGEEPGNGRYSTYDVE 321

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  + + +K +RT++ +   R DGR ++ VR IS + GLL RTHGS LF RGDTQAI  V
Sbjct: 322 TALKKLYSKRLRTIVKETGRRCDGRRTDEVRPISIETGLLPRTHGSCLFTRGDTQAIATV 381

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLG     Q  D ++G     F + Y F P   GE  R+G P RRE+GHG LA +A+   
Sbjct: 382 TLGGSGSSQKTDGITGMILKHFYLQYTFPPSCVGETGRIGGPGRREVGHGALAEKALSYT 441

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--- 469
           +P    FPYT+R+ S ITES GSSSMA+VCG SLA+MDAG+P+S P+AG+AMGL+ D   
Sbjct: 442 VPPVNDFPYTVRVESLITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMGLLLDEEG 501

Query: 470 --GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
             G++ ++L+DI G ED LG MDFKVAG D GIT  Q+D+K  G++  ++  AL QAK G
Sbjct: 502 GSGEEAVVLTDILGLEDALGTMDFKVAGNDKGITTFQLDIKCAGLTTALLGRALTQAKAG 561

Query: 528 RLHILNEMSKVLSE-SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-V 585
           RLHIL EM K   +  R ++  F P   IM++ PDQI  +IG GGK+IR I+E      +
Sbjct: 562 RLHILGEMQKAQPDGPRKEISPFVPTATIMSVDPDQIGKIIGPGGKIIRQIIEDFSLDGM 621

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN------------------------- 620
           ++++DG V I++ +     +A + I  +     +                          
Sbjct: 622 DVEEDGRVMISAFNSTSAASAVKYIEEMLKDVTLRGGGRGGGGGGGGRSSRGVPADFNAT 681

Query: 621 ----KIYKGQVV-KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 Y+   V  +  FGAFV F    +GLVH+S+L   RV      + +   + VK++
Sbjct: 682 AIIGTTYRDCEVVSIQPFGAFVEFAPGLEGLVHVSELDVNRVVTAEGFLADKPAIDVKVI 741

Query: 676 DFDDRGKIKLSMKVV--DQNTGK 696
             +D+GK++LS K V  D+  GK
Sbjct: 742 GLNDKGKVRLSRKAVLMDERGGK 764


>gi|197100218|ref|NP_001125193.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pongo
           abelii]
 gi|55727278|emb|CAH90395.1| hypothetical protein [Pongo abelii]
          Length = 703

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 229/684 (33%), Positives = 376/684 (54%), Gaps = 29/684 (4%)

Query: 41  LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100
           + T V        Q F PL V+Y+++  A G+IP  YLRRE   ++ EIL SR+IDRSIR
Sbjct: 1   MVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIR 59

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF   Y  +TQV+ N++  D  + P V+++  AS AL LS +P+ GPV   ++  I+G+
Sbjct: 60  PLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGE 119

Query: 161 YVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            V+NP   E   S L+L V+G  +  ++M+E  A  + +     AI  G    + +I+ I
Sbjct: 120 CVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGI 179

Query: 219 SKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKK 274
            +L K                 ++ +   ++  E L    + +  +K  R + ++ ++  
Sbjct: 180 QQLVKETGVTKRTPQKLFTPSPEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLD 239

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
                  +    +  EI+  F  +  +V R ++L++  R DGRD  ++R++S +V + + 
Sbjct: 240 TEEQLKEKFPQADPYEIIESFNVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKT 299

Query: 335 THGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
            HGS+LF RG TQ +  VT  + E     +Q + +++G +  +FM+HY F P AT E+ +
Sbjct: 300 LHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGK 359

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +   +RRE+GHG LA +A++PV+P+   FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD
Sbjct: 360 VTGLNRRELGHGALAEKALYPVIPR--DFPFTIRVTSEVLESNGSSSMASACGGSLALMD 417

Query: 451 AGVPISKPVAGIAMGLVKDGD-------DFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           +GVPIS  VAG+A+GLV   D       D+ +L+DI G ED+ G MDFK+AGT+ GITA+
Sbjct: 418 SGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITAL 477

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           Q D+K+ GI   I++ A+QQA   +  IL  M+K +S+ R    E  P VE + +P  + 
Sbjct: 478 QADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRTSRKENGPVVETVQVPLSKR 537

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPE 618
              +G GG  ++ +  +TG  ++  D+ T  + + + + +  AR+ I  I         E
Sbjct: 538 AKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSALHEARDFITEICKDDQEQQLE 597

Query: 619 VNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLD 676
              +Y   + ++ D G  V         L+H +QL   ++   + + ++ G  + VK   
Sbjct: 598 FGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFG 657

Query: 677 FDD-RGKIKLSMKVVDQNTGKPIV 699
            D   G+++LS KV+ Q+    +V
Sbjct: 658 RDPADGRMRLSRKVL-QSPATTVV 680



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 38/221 (17%)

Query: 28  DGAVLATYGETVVLATVVYDR-----------SLKDGQDFFPLTVNYQERTYAVGKIPGG 76
            G+ L   G+T VL TV +D            +  +G       ++Y+   YA  +I   
Sbjct: 301 HGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIG-- 358

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
              + +     E+    + ++++ P+  + +    +V   V++ +  SS  + S    S 
Sbjct: 359 ---KVTGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESNGSSS--MASACGGSL 413

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---------------GSLDLFVSGT 181
           ALM SG+P    V G  +  +      +P   E +               G +D  ++GT
Sbjct: 414 ALMDSGVPISSAVAGVAIGLVTKT---DPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 470

Query: 182 QDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
              +  ++ +     +   +V++AI       K +++ ++K
Sbjct: 471 NKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNK 511


>gi|154148101|ref|YP_001405843.1| polynucleotide phosphorylase/polyadenylase [Campylobacter hominis
           ATCC BAA-381]
 gi|187610248|sp|A7I002|PNP_CAMHC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|153804110|gb|ABS51117.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           hominis ATCC BAA-381]
          Length = 711

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/723 (37%), Positives = 405/723 (56%), Gaps = 56/723 (7%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
              +E        E  ++A+Q+ GA L     TVVLATV  + +  + +DF PLTV Y E
Sbjct: 2   KYAVEVNNNVEIFEINKVAKQAAGACLMKVKNTVVLATVARENTQVE-EDFLPLTVQYIE 60

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA G+IPGGY++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E  
Sbjct: 61  KQYAAGRIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVFVLSADPEID 120

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             VV + AAS AL LS +P + PV G +V YIN  +V+NP   E Q S LDL+V+G +D 
Sbjct: 121 LQVVGLNAASVALYLSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKDE 180

Query: 185 VLMVELE-----------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           +LM+E+             N+ SED +++AI F          A         K    ++
Sbjct: 181 MLMIEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKAILAGSTAYENTFSALKKPDAALE 240

Query: 234 SKDFSKLEEE-----MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
            K   ++E+E     + Q    D++ +     K  R  ++D +  K++   ++  + W +
Sbjct: 241 YK--PEVEDENIANFIEQNFTSDVQAAINQMAKSERATELDKIVNKIMQSETAIQNEWQK 298

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             + ++    + K++R+ +++++ R DGR  + +R IS +  +L   HGS LF RG TQA
Sbjct: 299 NVVSNIIGKFKRKIIRSQIINERRRADGRALDEIRPISIETNILPNAHGSCLFTRGQTQA 358

Query: 349 IVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           +VV TLG   D Q  DSL+        FM  YNF     GE S + +P RRE+GHG LA+
Sbjct: 359 LVVTTLGGETDAQVSDSLTSNTPISERFMFQYNFPGFCVGEASPLKSPGRRELGHGNLAK 418

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+ P +P     P  +R VSEI ES+GSSSMA+VCG SL+L  AGV   K VAG+AMGL
Sbjct: 419 RALTPSVPL--NNPQVIRTVSEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGL 476

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           + + D   IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGIS  I+  AL QAK 
Sbjct: 477 IFEDDKHAILTDIMGLEDHDGDMDFKVAGTREGITALQMDIKLGGISLEILREALNQAKD 536

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR +ILN M     +  +   E  P++EI  + P+++ ++IG GGK I+ ++++    ++
Sbjct: 537 GRNYILNLMEVANDDIIIN-EEILPKIEIFGVDPNKMVDIIGQGGKTIKELIDKYEVSID 595

Query: 587 ID-DDGTVKIASSSLAEIEAAR---------------------EMIRSITDVPEVNKIYK 624
           ++ D G VKI  ++   +E A+                        R  T   +V + + 
Sbjct: 596 LERDSGEVKIQGANKINVENAKSDILNIVKKSNDFKKGSKFGHHHERKETSNFQVGEEFD 655

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V K+MDFGAF+      DGL+H+S++ T+        + EGDT+ VK+ +   RGKI 
Sbjct: 656 GVVKKIMDFGAFISLKDGIDGLLHVSKIKTQ--------LSEGDTLRVKVEEI-KRGKIS 706

Query: 685 LSM 687
           L +
Sbjct: 707 LEL 709


>gi|322785621|gb|EFZ12276.1| hypothetical protein SINV_11817 [Solenopsis invicta]
          Length = 692

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/683 (35%), Positives = 388/683 (56%), Gaps = 29/683 (4%)

Query: 41  LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100
           + T V  R       F PL V+Y+++  A G+IP  +LRRE  P+E+EIL SR+IDRSIR
Sbjct: 1   MVTAVCQRQSS-TSSFLPLVVDYRQKAAAAGRIPTNFLRRELGPSEHEILTSRVIDRSIR 59

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF + +   TQ++ N++  D  + P V+++  ASAAL +S +P+ GPV   ++  I+ +
Sbjct: 60  PLFPEGFYFNTQIMCNMLAIDGMNDPDVIAINGASAALSVSDIPWNGPVGAVRLGMIDNE 119

Query: 161 YVLNPRLDEDQGS-LDLFV-SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            ++NP   + Q S L+L + +  Q+ ++M+E  AN++ E  +  AI  G  EC+ ++ AI
Sbjct: 120 IIVNPTRRQIQDSILNLIITAAKQNLIIMLEGSANEILEQQLRKAIKLGVKECQSIVAAI 179

Query: 219 SKLAKMCAKEPIVIDSKD---FSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKK 273
           + L K C K   V+++ +      L   + ++ +  L+   S    +K  R   ++DL+ 
Sbjct: 180 TNLQKTCGKTKRVLETSEQQQDDSLNSSVRELSEAKLQDIFSNHTHDKISRDNAVNDLRN 239

Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
            ++    ++++  +     S+F  +   V RT++L+K VR DGR  + +RDIS QV L  
Sbjct: 240 NVIEILRNDNADLDVKLAESIFGKVVKDVFRTLILEKGVRCDGRPMDGIRDISCQVDLFN 299

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVS 389
             HGS+LF RG TQ +  VTL + +    +D+    +SG +  +F +HY F P AT E  
Sbjct: 300 PLHGSALFQRGQTQVMCAVTLDSLQSALKMDTISMLISGMKEKNFFLHYEFPPYATNETG 359

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
                 RRE+GHG LA +A+ PVLP    +P+T+R+ SE+ ES+GSSSMATVCG SLAL+
Sbjct: 360 HASRAGRRELGHGALAEKALRPVLP--KDYPFTIRLTSEVLESNGSSSMATVCGGSLALL 417

Query: 450 DAGVPISKPVAGIAMGLV-------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           DAG+PIS P AG+A+GLV        + +++ IL+DI G ED+LG MDFK+AGT  G TA
Sbjct: 418 DAGIPISSPTAGVAIGLVTKCNETNTNIENYKILTDILGIEDYLGDMDFKIAGTKRGFTA 477

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +Q D+KI G+   I++  +QQA   +L I+  M+ V+ E R    +  P V+ + +P  Q
Sbjct: 478 LQADIKISGVPLKIIMECIQQATNAKLQIIKTMNTVIREPRQTRKDKMPVVDNLEVPIHQ 537

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-----ITDVP 617
               +G+GG  ++ I+ +TG  +   D+ T  I + +   +  A+EMI +        + 
Sbjct: 538 RGKFLGIGGMNLKKILLETGVHIYPHDENTYSIFAPNEDAMTEAKEMIENVLQKDREPIL 597

Query: 618 EVNKIYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLL 675
           E   IY  ++V++ + G  V         L+  SQL   ++   S + ++ G  + VK  
Sbjct: 598 EFGAIYTAKIVEIRETGVMVTLYNNMIPTLLPNSQLDQRKILHPSALSLEVGQDIQVKYF 657

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
             D   G+I++S KV+ + T  P
Sbjct: 658 GRDPVSGQIRISRKVLQKPTLTP 680



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 86/226 (38%), Gaps = 40/226 (17%)

Query: 28  DGAVLATYGETVVLATVVYD---------------RSLKDGQDFFPLTVNYQERTYAVGK 72
            G+ L   G+T V+  V  D                 +K+   F     +Y+   YA  +
Sbjct: 302 HGSALFQRGQTQVMCAVTLDSLQSALKMDTISMLISGMKEKNFFL----HYEFPPYATNE 357

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
                    SR    E+    + ++++RP+  K Y    ++   V++ +  SS  + ++ 
Sbjct: 358 TGHA-----SRAGRRELGHGALAEKALRPVLPKDYPFTIRLTSEVLESNGSSS--MATVC 410

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ------------GSLDLFVSG 180
             S AL+ +G+P   P  G  +  +      N  ++  +            G +D  ++G
Sbjct: 411 GGSLALLDAGIPISSPTAGVAIGLVTKCNETNTNIENYKILTDILGIEDYLGDMDFKIAG 470

Query: 181 TQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           T+     ++ +     +   ++++ I    N    +I+ ++ + + 
Sbjct: 471 TKRGFTALQADIKISGVPLKIIMECIQQATNAKLQIIKTMNTVIRE 516


>gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 713

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 265/696 (38%), Positives = 404/696 (58%), Gaps = 52/696 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             IE        +  ++A+Q+ GAVL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 22  YSIEINKNTEIFDIDKVAKQATGAVLMKQGKSVVLATVAREEKQVE-EDFLPLTVQYIEK 80

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           TYA GKIPGGY++RE++P++ E L +R+IDRS+RPLF K Y   TQ+++ V+  D +   
Sbjct: 81  TYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDL 140

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAV 185
            V+S+ AAS AL LS +P + PV G ++  I+G ++LNP  +E + S LDL+V+G +D +
Sbjct: 141 QVMSLNAASVALYLSDIPMKAPVCGVRIGRIDGNFILNPNNEELKNSTLDLYVAGVKDEL 200

Query: 186 LMVELEA---------------------------NQLSEDVVLDAIIFGHNECKPVIEAI 218
           LM+E+ A                           N+L+ED +L+A+            A 
Sbjct: 201 LMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELNEDEILEALNLAQKAILNGSNAY 260

Query: 219 SKLAKMCAK--EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV 276
            +      K  +  + +  ++ ++   +    ++ ++ +     K  R  +++ + K+++
Sbjct: 261 KEAFSKHRKNSQIELKNEIEYPEILAFVENNFQKQIKEAINQMAKSERASELNKIAKEIL 320

Query: 277 SYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTH 336
           +        W+E  I++    I+ K++R  +LDK  R DGR    VR IS +  +L   H
Sbjct: 321 N--LEIAKDWSEESILNTLAKIKRKLIREQILDKGKRADGRSLNEVRPISIETNILPNAH 378

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAP 394
           GS LF RG TQA+VV TLG   D Q +D L+        FM++YNF   + GE S + AP
Sbjct: 379 GSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPINERFMVNYNFPGFSVGEASPIKAP 438

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AGVP
Sbjct: 439 GRRELGHGNLAKRALYPSVD--ENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVP 496

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             K VAG+AMGL+ + +   IL+DI G EDH G MDFKVAG+  G+TA+QMD+K+GGI +
Sbjct: 497 SLKLVAGVAMGLIFEDNKHAILTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQ 556

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  AL QAK GR+HILN M +   E  +   E  P++E+ ++ P +I ++IG  GK I
Sbjct: 557 ETLKQALYQAKEGRIHILNIMEEAAKEIVVN-EEVLPKLELFSVDPSKIVDIIGQAGKTI 615

Query: 575 RGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP-------------EVN 620
           + I+E+ G  +++D + G VKIA +   +I+AA++ I +IT                E+ 
Sbjct: 616 KEIIEKFGVSIDLDREKGEVKIAGNQNEQIKAAKDYIINITSSQKGTKKNSKDISGFELG 675

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           + ++G V K+  FGAFV      DGL+H S++   +
Sbjct: 676 QEFQGIVKKIAPFGAFVELKNGVDGLLHNSKIKKSQ 711


>gi|307183198|gb|EFN70107.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Camponotus floridanus]
          Length = 689

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 237/677 (35%), Positives = 380/677 (56%), Gaps = 27/677 (3%)

Query: 41  LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100
           + T V  +       F PL V+Y+++  A G+IP  +LRRE  PTENEIL SR+IDRSIR
Sbjct: 1   MVTAVC-KHQSSNSSFLPLIVDYRQKAAAAGRIPTNFLRRELGPTENEILTSRVIDRSIR 59

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF + +  +T ++ N++  D  + P V+++  ASAAL +S +P+ GPV   ++  I+ +
Sbjct: 60  PLFPEGFYYDTHIMCNMLAVDGINDPDVIAINGASAALSISDIPWNGPVGAIRIGMIDNE 119

Query: 161 YVLNPRLDEDQGS-LDLFVSGTQDA-VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +++NP   + Q S L++ V+ T+   ++M+E  AN++ E  +  AI  G  EC+ ++ AI
Sbjct: 120 FIINPTRRQIQDSILNMIVTATKHNLIVMLEGSANEILEQDLKKAIKLGVKECQNIVNAI 179

Query: 219 SKLAKMCAKEPIVIDS-KDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKM 275
           + L K   K    I++ +  + L   + ++ +  LR   S    +K  R   I+DL+  +
Sbjct: 180 ANLQKAHGKTKRNIETVEQDNNLINSVKELSETKLREIFSNHAHDKISRDNAINDLRNSV 239

Query: 276 VSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
           +    S+++  +     ++F  I   + RT++LD  VR DGR  + +RDIS QV L    
Sbjct: 240 IEALKSDNTDLDVKSAENIFGKITKDLFRTLILDTDVRCDGRSPDGLRDISCQVDLFNPL 299

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRM 391
           HGS++F RG TQ +  V L + E    +D+    +SG +  +F +HY F P AT E   +
Sbjct: 300 HGSAVFQRGQTQVMCTVALDSLESALKMDAMSMLISGVKEKNFFLHYEFPPYATNETGHV 359

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G   RRE+GHG LA +A+  +LP    +P+T+R+ SE+ ES+GSSSMATVCG SLAL+DA
Sbjct: 360 GRIGRREMGHGALAEKALRSILP--KDYPFTIRLTSEVLESNGSSSMATVCGGSLALLDA 417

Query: 452 GVPISKPVAGIAMGLV-------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
           G+PIS   AG+A+GLV        D D + IL+DI G ED+LG MDFK+AGT  G TA+Q
Sbjct: 418 GIPISSSAAGVAIGLVTKYNETNTDIDKYKILTDILGIEDYLGDMDFKIAGTKRGFTALQ 477

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
            D+KI G+   I++  L QA   +  I+  M+ V+   + +  +  P +E + +P  Q  
Sbjct: 478 ADVKIPGVPLKIIMECLYQAIAAKREIIKIMNDVIRTPQTKKKDKMPVIENLEVPIHQRG 537

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-----ITDVPEV 619
             +G+GG  ++ I+ +TG  +   D+ T  I + +   +  A+EMI +          E 
Sbjct: 538 KFLGIGGMNLKKILLETGVHIFPHDENTYSIFAPNENAMNEAKEMIENILQKDREPTLEF 597

Query: 620 NKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDF 677
             IY  ++V++ + G  V         L+  SQL   ++   S + ++ G  + VK    
Sbjct: 598 GAIYTAKIVEIREIGVMVTLHSKMVPTLLPNSQLDQRKIHHPSALGLEIGQEIQVKYFGR 657

Query: 678 DD-RGKIKLSMKVVDQN 693
           D   G+I++S KV+ + 
Sbjct: 658 DPASGQIRISRKVLQEP 674



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 90/244 (36%), Gaps = 35/244 (14%)

Query: 28  DGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTV----------NYQERTYAVGKIPGG 76
            G+ +   G+T V+ TV  D        D   + +          +Y+   YA  +    
Sbjct: 300 HGSAVFQRGQTQVMCTVALDSLESALKMDAMSMLISGVKEKNFFLHYEFPPYATNETGHV 359

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
                 R    E+    + ++++R +  K Y    ++   V++ +  SS  + ++   S 
Sbjct: 360 -----GRIGRREMGHGALAEKALRSILPKDYPFTIRLTSEVLESNGSSS--MATVCGGSL 412

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ------------GSLDLFVSGTQDA 184
           AL+ +G+P      G  +  +      N  +D+ +            G +D  ++GT+  
Sbjct: 413 ALLDAGIPISSSAAGVAIGLVTKYNETNTDIDKYKILTDILGIEDYLGDMDFKIAGTKRG 472

Query: 185 VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---KMCAKEPIVIDSKDFSK 239
              ++ +     +   ++++ +       + +I+ ++ +    +   K+ + +       
Sbjct: 473 FTALQADVKIPGVPLKIIMECLYQAIAAKREIIKIMNDVIRTPQTKKKDKMPVIENLEVP 532

Query: 240 LEEE 243
           + + 
Sbjct: 533 IHQR 536


>gi|225677342|ref|ZP_03788315.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590610|gb|EEH11864.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 507

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/511 (48%), Positives = 346/511 (67%), Gaps = 6/511 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF +    IEW GRPL LETG+IARQ+ G+V+  YG+T VL TVV  +  ++  DF PL 
Sbjct: 1   MFKIIKKSIEWGGRPLSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKK-EESVDFLPLN 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YA+GKIPGG+ +RE +P++ E LISR+IDRSIRPLF + + +E  V+ N++ +
Sbjct: 60  VQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQ-GSLDLFV 178
           D  + P V +++ A AAL +SG+PF   + G  V    N  Y+LNP + E +  SLDLF+
Sbjct: 120 DTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFL 179

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
           SG ++++LMVE E  +LSE+ V +AI FGH   KPVI+ I + A     +P      D S
Sbjct: 180 SGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDAS 239

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
            + +E+ +   +D   +     K  R + ++ +++ +++      +  +E  I    ++ 
Sbjct: 240 DITQEL-EKYGKDFEKAYSQTVKQERVQALEAIRENILNTLKE--TGKDEKLITYAVKNF 296

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR ++  K VR+DGR  + +R I  +V +L +THGS+LF RG+TQA+VV  LGT +
Sbjct: 297 ERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQ 356

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD + G +R  FM+HYNF   A GE S   AP RREIGHG+LA +AIHPVLP  ++
Sbjct: 357 DEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSE 416

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEI ESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+KD D+++ILSD
Sbjct: 417 FPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSD 476

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           I GDED+LG MDFKVAGT  G+TA+QMDMK 
Sbjct: 477 ILGDEDYLGDMDFKVAGTSEGVTALQMDMKT 507


>gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp.
           SB155-2]
 gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp.
           SB155-2]
          Length = 732

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 273/731 (37%), Positives = 415/731 (56%), Gaps = 52/731 (7%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
             E E        E G +A+Q++G+VL   G+TV+LATVV ++ + D +DF PLTV Y E
Sbjct: 4   RFEFEMNNLKEIYEFGEVAKQTNGSVLLKSGKTVMLATVVMEKEMVD-EDFLPLTVQYIE 62

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           ++YA GKIPGG+++RE +P + E L +R++DR++RPLF K Y   T + + V+  D ES 
Sbjct: 63  KSYAAGKIPGGFVKREQKPGDFETLTARIVDRALRPLFPKGYLYPTVITVMVLSADPESD 122

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDA 184
             V+++ AASAAL +S +P    V G +V  ++G+ + NP L    + +LDL+++GT++ 
Sbjct: 123 LQVLALNAASAALFVSDIPVRKAVSGLRVAKVDGEVLFNPPLSKLKESTLDLYLAGTKEE 182

Query: 185 VLMVELEA-------------------------------NQLSEDVVLDAIIFGHNECKP 213
           +LM+E+ A                               N + E+ +   I  G +  + 
Sbjct: 183 LLMIEMAAIGSYKTEVVPTTVDPLMDPTLAEEVITIKEPNAMKEEELASIIAQGKDVIQI 242

Query: 214 VIEAISKLAKMCAKEPIVID---SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
                 K     AKE + ++         +   + ++   D++ +     K  R + + +
Sbjct: 243 ACNEYEKYFIESAKEQLELELLPQTIDEDIWTYVEEIYAADIKEAVQAMAKSERNELLKE 302

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           + KK+     ++   W    I  V E  + K+VR ++L++  R DGR  + VR I  +  
Sbjct: 303 IAKKISEDDVAKEQGWEYETIYKVVEKYKRKIVREMILNEGKRADGRGLKDVRPIDIKTN 362

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCATGEV 388
           +L   HGS LF RG+TQA+VV T+G + D Q  + L   G +   FM+HYNF P + GE 
Sbjct: 363 ILPSAHGSCLFTRGETQALVVCTIGEKTDAQMYEMLTSKGPEYEHFMVHYNFPPFSVGEA 422

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
             + AP RRE+GHG LARRA+ PV+        T R+VSEI ES+GSSSMATVCG +LAL
Sbjct: 423 KPISAPGRRELGHGNLARRALEPVVDVPEDK--TYRLVSEILESNGSSSMATVCGGALAL 480

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
             A + ++  VAG+AMGL+ + D + IL+DI G EDH G MDFKVAGT  G+TAMQMD+K
Sbjct: 481 KAANIDLADLVAGVAMGLIVEDDKYAILTDIMGLEDHDGDMDFKVAGTHDGVTAMQMDIK 540

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           +GG+ + I+  ALQQA+  RLHIL  M +   +  +   E  P    + + P +I ++IG
Sbjct: 541 LGGVQQEILEQALQQAREARLHILKIMEEAAEKIEIN-EENLPSSHTITVHPSKIVDIIG 599

Query: 569 MGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVN------- 620
             GK I+ I+E+    ++ID D G VK+   +  ++ AA + I+ IT+ P+         
Sbjct: 600 QAGKTIKEIIEKFEVSIDIDRDKGKVKVTGKNRPKVIAACDYIQEITNKPKPEPVKFQEG 659

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I KG++ +  +FGAFV   G  DGL+HIS+LS+ RV +  DVV  GD V V++L    +
Sbjct: 660 DILKGKIKRTTNFGAFVELPGGVDGLLHISKLSSGRVERVEDVVNIGDEVEVEVLS--QK 717

Query: 681 G-KIKLSMKVV 690
           G KI+L ++ V
Sbjct: 718 GHKIELGLRQV 728


>gi|315637153|ref|ZP_07892375.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           JV22]
 gi|315478520|gb|EFU69231.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           JV22]
          Length = 725

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/726 (37%), Positives = 418/726 (57%), Gaps = 56/726 (7%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  G+    E  ++A+QS+GAVLA  G  VVLATVV +      +DF PLTV Y E+T
Sbjct: 6   EFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKT 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA  K+PGG+++RE +P++ E L SR+IDRS+RPLF K Y   T + + V+  D      
Sbjct: 66  YAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQ 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            +S+ AA+AAL  S LP +  V G +V  I    V+NP  ++ + S LDL+V+G++D +L
Sbjct: 126 TLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSKDELL 185

Query: 187 MVELE--------------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           M+E++                     N++ ED +++AI F  N  K       K  +  +
Sbjct: 186 MIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKAFEEVS 245

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           KE + ++   F+ +EE +   +++    D++ +     K  R  Q+ D+  KM+S   +E
Sbjct: 246 KEKVEVELVKFT-IEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDV-AKMISK--NE 301

Query: 283 HSSWNEGEIVSVFED---IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +   NE E  +++E    ++ ++VR ++++++VR DGR  + VR IS +  +L  TH S 
Sbjct: 302 YCISNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSSC 361

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRR 397
           LF RG+TQA+V+ T+   +D Q  + L+       +FM+HYNF   + GE   M    RR
Sbjct: 362 LFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGRR 421

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E+GHG LA++A+   +     +  T+R+VSEI ES+GSSSMATVCG SLAL  AG+PIS 
Sbjct: 422 ELGHGNLAKKALEATID--KDYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISD 479

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            VAG+AMG+V + D + IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGI  +++
Sbjct: 480 LVAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVL 539

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK GR HIL+ M     +         P +E  AI P +I  VIG  G  I+ I
Sbjct: 540 KEALLQAKEGRTHILSLMKDAEKDIVP--SNALPLIEQFAIDPSKIMVVIGKAGATIKEI 597

Query: 578 VEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS----------------ITDVPEVN 620
           +E+    +++D ++GTVK++  +   I  A E I++                   +   +
Sbjct: 598 IEKFTVSIDLDKENGTVKVSGGNKQNIIDACEHIKTISNNAPSKKDASKNIDFEKLYSED 657

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++  G+V ++ DFGAF+      +GL+HIS++S +RV   +DV+  G  + VK+L    +
Sbjct: 658 EVVIGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKV-KK 716

Query: 681 GKIKLS 686
            +I+LS
Sbjct: 717 DRIELS 722


>gi|25012192|gb|AAN71212.1| GM16802p [Drosophila melanogaster]
          Length = 717

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/655 (36%), Positives = 368/655 (56%), Gaps = 29/655 (4%)

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +  T++ G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D  
Sbjct: 46  RNMTFSSGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAV 105

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T+
Sbjct: 106 HSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATK 165

Query: 183 -DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSK 239
            + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++  ++   +
Sbjct: 166 QNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPE 225

Query: 240 LEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           L + +  M +  LR        +K  R   +++++  ++    S         I   F  
Sbjct: 226 LGKAVRSMCEMRLREIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQ 285

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
               + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L ++
Sbjct: 286 TSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQ 345

Query: 358 EDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P 
Sbjct: 346 ESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPT 405

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----- 467
           LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV     
Sbjct: 406 LPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFEN 463

Query: 468 ---KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
              K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A
Sbjct: 464 DDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKA 523

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              +  IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG  
Sbjct: 524 TDAKSKILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGTS 583

Query: 585 VNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +   D+    + + S A ++ A+E     M++      E   IY  ++ ++ D G  V  
Sbjct: 584 LTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVIL 643

Query: 640 -CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                  L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 644 YPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 698



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 34/231 (14%)

Query: 28  DGAVLATYGETVVLATVVY-DRSLKDGQDFFP-----------LTVNYQERTYAVGKIPG 75
            G+ L   G+T V  TV    +      D                ++Y+   YA G++  
Sbjct: 324 HGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVG- 382

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
               R       E+    + +RS+ P     Y    ++   V++ +  SS  + S+   S
Sbjct: 383 ----RIGPVGRREMGHGALAERSLLPTLPNDYPFTVRLTSEVLESNGSSS--MASVCGGS 436

Query: 136 AALMLSGLPFEGPVVGAQVDYIN-----------GQYVLNP--RLDEDQGSLDLFVSGTQ 182
            ALM +G+P   P  G  +  +               +L     +++  G +D+ V+GT+
Sbjct: 437 LALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTR 496

Query: 183 DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
                ++ +     +   VV++++    +    +++ +S+  +   K P  
Sbjct: 497 KGFTAIQADLKIPGIPLKVVMESLQKATDAKSKILDIMSEAIREPRKYPKE 547


>gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas
           denitrificans DSM 1251]
 gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 721

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 280/728 (38%), Positives = 412/728 (56%), Gaps = 53/728 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            + ++I+   +  +   G +A+Q++GA     G TV+LATVV D +     DF PLTV Y
Sbjct: 2   KYDIKIDLKNKNEEYSFGEVAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLPLTVQY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA GKIPGG+ +RE++ ++ E L SR++DRS+RPLF K + + TQ+ I V   D E
Sbjct: 62  IEKAYAAGKIPGGFFKRETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQ 182
           S   V+++ AASAAL +S +     V   +V  I+G+ +LNP L E D+ +LDL++SGT+
Sbjct: 122 SDLQVLALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTK 181

Query: 183 DAVLMVELE------------------------------ANQLSEDVVLDAIIFGHNECK 212
           + +LM+E+                               +N + ED ++  +        
Sbjct: 182 EDLLMIEMRSKGGIKVDTNLMIDPLMDPTLSSAIIATHVSNAVPEDELITILAKAEELLF 241

Query: 213 PVIEAISKLAKMCAKEPIVIDSKDFSKLEEE---MSQMIKEDLRVSCFIPEKYVRCKQID 269
                  ++ K   KE   ++ K  +  EE    +      D++ +     K  R   + 
Sbjct: 242 ETNAMYEEMFKEFKKETSPLECKAHALNEEMLKYVRSNHYSDIKSAMNQMAKSERSTALR 301

Query: 270 DLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQV 329
            L+KK++         W+E E+  V E ++ + VR  +L+ +VR DGR    +R IS   
Sbjct: 302 QLRKKIIIT----KEEWDEVELKDVIESVKKEQVRGQILNDRVRADGRALNEIRPISIST 357

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCATGE 387
            +L   H S LF RG TQA+VV+T+G  +D Q  ++L   GTQ  +FM+HYNF   + GE
Sbjct: 358 NVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGTQNENFMVHYNFPGFSVGE 417

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
            S +    RRE+GHG LA+RA+ P++    Q   T+R+VSEI ES+GSSSMATVCG  +A
Sbjct: 418 ASPIMGTKRRELGHGNLAKRALEPIVNLEGQ---TVRLVSEILESNGSSSMATVCGGYMA 474

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           L  A +  S  +AGIAMG+V +GD + ILSDI G EDH G +DFKV G+  GITAMQMD+
Sbjct: 475 LRAADIETSDTIAGIAMGMVSEGDKYAILSDIMGLEDHDGDLDFKVTGSKDGITAMQMDI 534

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+GGIS NI+  AL QAK GR HI+N M +             P  +   I P  I ++I
Sbjct: 535 KLGGISLNILKEALYQAKEGRAHIINIMQEAEKNISFN-DGVLPSTDFFHINPSFIGDII 593

Query: 568 GMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK----- 621
           G  GK IR I+E+    ++ID  DG VK+   S + ++AARE I  I   P++ K     
Sbjct: 594 GQAGKTIREIIEKFEVAIDIDKKDGKVKVTGKSKSGVQAAREHIEGIVSTPKMPKIEYKV 653

Query: 622 --IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             I+KG V K+++FGAF+      DGL+HIS++S +RV K SD++KEG+ + V++L+F  
Sbjct: 654 GDIHKGIVKKIVEFGAFIELPDGVDGLLHISKISDQRVEKVSDILKEGEEINVEILEF-K 712

Query: 680 RGKIKLSM 687
             KI L +
Sbjct: 713 GNKISLGI 720


>gi|161079377|ref|NP_001097990.1| CG11337, isoform C [Drosophila melanogaster]
 gi|158030458|gb|ABW08815.1| CG11337, isoform C [Drosophila melanogaster]
          Length = 721

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/655 (36%), Positives = 369/655 (56%), Gaps = 29/655 (4%)

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +  T++ G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D  
Sbjct: 50  RNMTFSSGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAV 109

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQ 182
            SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS T+
Sbjct: 110 HSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATK 169

Query: 183 -DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSK 239
            + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++  ++   +
Sbjct: 170 QNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPE 229

Query: 240 LEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
           L + +  M +  LR        +K  R   +++++  ++    S         I   F  
Sbjct: 230 LGKAVRSMCEMRLREIFQDSTHDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQ 289

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
               + R ++ ++ +R DGRD + +R+IS QV + +  HGS+LF RG TQ    V+L ++
Sbjct: 290 TSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQ 349

Query: 358 EDEQYVDSL-----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           E    +DSL      G +  +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P 
Sbjct: 350 ESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPT 409

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV----- 467
           LP    +P+T+R+ SE+ ES+GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV     
Sbjct: 410 LPN--DYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFEN 467

Query: 468 ---KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
              K   D+ IL+DI G ED++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A
Sbjct: 468 DDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKA 527

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
              + +IL+ MS+ + E R    E  P  E + + P Q   +IG  G  ++ I  +TG  
Sbjct: 528 TDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQLIGPSGLHMKRIYLETGTS 587

Query: 585 VNIDDDGTVKIASSSLAEIEAARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +   D+    + + S A ++ A+E     M++      E   IY  ++ ++ D G  V  
Sbjct: 588 LTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVIL 647

Query: 640 -CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                  L+H SQL   ++A  S + ++ G  + VK    D   G ++LS KV+ 
Sbjct: 648 YPSMPPALLHNSQLDQRKIAHPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVLQ 702



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 34/231 (14%)

Query: 28  DGAVLATYGETVVLATVVY-DRSLKDGQDFFP-----------LTVNYQERTYAVGKIPG 75
            G+ L   G+T V  TV    +      D                ++Y+   YA G++  
Sbjct: 328 HGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVG- 386

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
               R       E+    + +RS+ P     Y    ++   V++ +  SS  + S+   S
Sbjct: 387 ----RIGPVGRREMGHGALAERSLLPTLPNDYPFTVRLTSEVLESNGSSS--MASVCGGS 440

Query: 136 AALMLSGLPFEGPVVGAQVDYIN-----------GQYVLNP--RLDEDQGSLDLFVSGTQ 182
            ALM +G+P   P  G  +  +               +L     +++  G +D+ V+GT+
Sbjct: 441 LALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTR 500

Query: 183 DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
                ++ +     +   VV++++    +    +++ +S+  +   K P  
Sbjct: 501 KGFTAIQADLKIPGIPLKVVMESLQKATDAKSNILDIMSEAIREPRKYPKE 551


>gi|157737429|ref|YP_001490112.1| polynucleotide phosphorylase/polyadenylase [Arcobacter butzleri
           RM4018]
 gi|187470965|sp|A8EU19|PNP_ARCB4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157699283|gb|ABV67443.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           RM4018]
          Length = 725

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 272/726 (37%), Positives = 417/726 (57%), Gaps = 56/726 (7%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  G+    E  ++A+QS+GAVLA  G  VVLATVV +      +DF PLTV Y E+T
Sbjct: 6   EFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKT 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA  K+PGG+++RE +P++ E L SR+IDRS+RPLF K Y   T + + V+  D      
Sbjct: 66  YAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKNVDLQ 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
            +S+ AA+AAL  S LP +  V G +V  I    V+NP  ++ + S LDL+V+G+++ +L
Sbjct: 126 TLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGSKEELL 185

Query: 187 MVELE--------------------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           M+E++                     N++ ED +++AI F  N  K       K  +  +
Sbjct: 186 MIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKAFEEVS 245

Query: 227 KEPIVIDSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE 282
           KE   ++   F+ +EE +   +++    D++ +     K  R  Q+ D+  KM+S   +E
Sbjct: 246 KEKFEVELVKFT-IEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDV-AKMISK--NE 301

Query: 283 HSSWNEGEIVSVFED---IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
           +   NE E  +++E    ++ ++VR ++++++VR DGR  + VR IS +  +L  TH S 
Sbjct: 302 YCISNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSSC 361

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRR 397
           LF RG+TQA+V+ T+   +D Q  + L+       +FM+HYNF   + GE   M    RR
Sbjct: 362 LFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGRR 421

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E+GHG LA++A+   +     +  T+R+VSEI ES+GSSSMATVCG SLAL  AG+PIS 
Sbjct: 422 ELGHGNLAKKALEATID--KDYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISD 479

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            VAG+AMG+V + D + IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGI  +++
Sbjct: 480 LVAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVL 539

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK GR HIL+ M     +         P +E  AI P +I  VIG  G  I+ I
Sbjct: 540 KEALLQAKEGRTHILSLMKDAEKDIVP--SGALPLIEQFAIDPSKIMVVIGKAGATIKEI 597

Query: 578 VEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS----------------ITDVPEVN 620
           +E+    +++D ++GTVK++  +   I  A E I++                   +   +
Sbjct: 598 IEKFTVSIDLDKENGTVKVSGGNKQNIIDACEHIKTISNNAPSKKDASKNIDFEKLYSED 657

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++  G+V ++ DFGAF+      +GL+HIS++S +RV   +DV+  G  + VK+L    +
Sbjct: 658 EVVIGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKV-KK 716

Query: 681 GKIKLS 686
            +I+LS
Sbjct: 717 DRIELS 722


>gi|315638718|ref|ZP_07893892.1| polyribonucleotide nucleotidyltransferase [Campylobacter
           upsaliensis JV21]
 gi|315481342|gb|EFU71972.1| polyribonucleotide nucleotidyltransferase [Campylobacter
           upsaliensis JV21]
          Length = 736

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 276/731 (37%), Positives = 421/731 (57%), Gaps = 60/731 (8%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           ++    I+        +  ++A+Q+ G+VL   G++VVLATV  +    + +DF PLTV 
Sbjct: 18  NIMQYSIQINQNLEIFDIDKVAKQAAGSVLMRVGKSVVLATVAREDKQVE-EDFLPLTVQ 76

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y E+ YAVG+IPGGY++RE++P +NE L +R+IDRS+RPLF K Y   TQ+++ V+  D 
Sbjct: 77  YIEKAYAVGRIPGGYIKRETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADD 136

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGT 181
           E    V+S+ AAS AL LSG+P + PV G ++  IN ++VLNP      + +LDL+V+G 
Sbjct: 137 EVDLQVMSLNAASVALYLSGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGV 196

Query: 182 QDAVLMVELEA-----------------------------NQLSEDVVLDAIIFGHNECK 212
           +D +LM+E+ A                             N+LSED +L A+        
Sbjct: 197 KDELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVINELSEDEILQALSVAKKAIL 256

Query: 213 PVIEAISK--LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
               A  +        +E  + +  +  +L E + Q    +++ +     K  R  +++ 
Sbjct: 257 NGSNAYEEAFFKHRKKEELELKEELENVELFEFIKQNYTNEVKFAINQMAKSERASELEK 316

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           + K+++    +    +++ ++ +    ++ ++VR  +L ++ R DGR+   VR I  +  
Sbjct: 317 IVKELM-KLENIIDKYSQEDVFNALSKVKKELVRAQILKERKRADGRNLNEVRAIEIETN 375

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEV 388
           +L   HGS LF RG TQA+VV TLG   D Q VD LS        FM++YNF   + GE 
Sbjct: 376 ILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPISERFMVNYNFPGFSVGEA 435

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
           S + AP RRE+GHG LA+RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL
Sbjct: 436 SPIKAPGRRELGHGNLAKRALYPSVD--ENYPYVVRLVSEILESNGSSSMATVCGGSLAL 493

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
             AGVP  K VAG+AMGLV + +D+ IL+DI G EDH G MDFKVAGT  GITA+QMD+K
Sbjct: 494 RAAGVPSIKLVAGVAMGLVLEDNDYAILTDIMGLEDHDGDMDFKVAGTKDGITALQMDIK 553

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           +GGI ENI+  AL QA+  RLHIL+ M +  S+  +   E  P++E+ ++ P +I ++IG
Sbjct: 554 LGGIDENILKNALYQAREARLHILDLMEEANSQIIIN-EEVLPKLELFSVEPSKIVDIIG 612

Query: 569 MGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE--------- 618
             GK I+ I+E+ G  +++D + G VKIA +   +I+AA++ I SIT   +         
Sbjct: 613 QAGKTIKEIIEKFGVSIDLDREKGEVKIAGNQSEQIKAAKDYIISITSKGKKFSKDLTQF 672

Query: 619 --VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               + ++ +V KV  FGAF+      DGL+H S++ T+        + E D V VK+ +
Sbjct: 673 KVGEEFFEAEVKKVAPFGAFIALKDGVDGLLHSSKMKTK--------LSENDKVDVKISE 724

Query: 677 FDDRGKIKLSM 687
               GKI + +
Sbjct: 725 I-KNGKISVDL 734


>gi|34557289|ref|NP_907104.1| polynucleotide phosphorylase/polyadenylase [Wolinella succinogenes
           DSM 1740]
 gi|81833066|sp|Q7M9I4|PNP_WOLSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34483005|emb|CAE10004.1| NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes]
          Length = 736

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/737 (36%), Positives = 417/737 (56%), Gaps = 57/737 (7%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +    EI    +    E G IA+Q++G+VL   G++V+LA+V Y+   +  +DF PLTV
Sbjct: 1   MNATIKEIALPNKTETFEFGAIAKQANGSVLYRCGKSVLLASVCYESDERVKEDFLPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y E++YA GK PGG+++RES+P + E L SR+IDRS+RPLF K Y + TQ+ + V+   
Sbjct: 61  QYIEKSYAAGKFPGGFIKRESKPGDFETLTSRIIDRSLRPLFPKGYAHPTQITVMVLSAQ 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            ++    +++ AASAAL +S +P   PV G ++  ING  V+NP   E  + +LDLFVSG
Sbjct: 121 NDADLQTMALNAASAALFVSDIPLRKPVHGLRIGKINGALVVNPTTKEMSESTLDLFVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFG---------------HNE--------------- 210
            ++ +LM+E+    L+ D + +    G               H                 
Sbjct: 181 VEEDLLMIEMRT--LASDEINNTCFVGDCGMVAASASDILKIHQANEMKEEELLEALELA 238

Query: 211 ---CKPVIEAISKLAKMCAKEPIVIDSKDF---SKLEEEMSQMIKEDLRVSCFIPEKYVR 264
               K       +     AK   +++ K     S++ + + +     ++ +     K  R
Sbjct: 239 KTSIKKASACYVEAFTPLAKPDAILELKPDITSSEIYQYIKENHAIAIKEAITRMAKSER 298

Query: 265 CKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRD 324
              +  + K++ S   ++ S W+   +       + + VR ++L+++ R DGR  + VR 
Sbjct: 299 HSDLKRIAKEIASSERAQESEWSFEAVYETVGKYKREAVRALILEERRRADGRGLKEVRP 358

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLP 382
           I  Q  +L   H S+LF RG+TQA+VV TLG   D Q  + L   G+ +  FM+HYNF  
Sbjct: 359 IDIQTNILPNAHASALFTRGETQALVVATLGGDMDAQSYELLTEKGSSKERFMVHYNFPS 418

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            + GE   +GAP RRE+GHG LA+RA+ P +        T+R+VSEI ES+GSSSMATVC
Sbjct: 419 FSVGEAGMVGAPGRRELGHGNLAKRALEPTI--EEWGAQTIRLVSEILESNGSSSMATVC 476

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
           G SLAL  AG+  +  VAG+AMGL+ + +   IL+DI G EDH G MDFK+AGT +GITA
Sbjct: 477 GGSLALKAAGINTTALVAGVAMGLIVEAEKHAILTDIMGLEDHDGDMDFKIAGTSTGITA 536

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           MQMD+K+GG+S  I+  AL QAK GR HIL  M K  SE  +   E  P ++I +I P +
Sbjct: 537 MQMDIKLGGLSMEILKEALYQAKEGREHILGIMEKAQSEIIIN-DEILPSLQIFSINPGR 595

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSI-------- 613
           I ++IG  GK I+ I+E+    ++++ D+G VK+  S+  ++EAA+E I SI        
Sbjct: 596 IVDIIGQAGKTIKEIIERFEVAIDLNRDNGEVKVTGSNKQKVEAAKEHILSISNQEAPQR 655

Query: 614 ---TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
               DV    +++KG+V K++DFGAF+      DGL+H+S++   R  +  +V+KEG+ +
Sbjct: 656 VRVADVYSAGEVFKGKVKKIVDFGAFIELPKGGDGLLHVSKIVQHRDQRIDEVIKEGEEI 715

Query: 671 WVKLLDFDDRGKIKLSM 687
            V++L  + + K++L  
Sbjct: 716 EVQILSIN-KNKVELGR 731


>gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
 gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 691

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 233/685 (34%), Positives = 398/685 (58%), Gaps = 18/685 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G+ + +ETG++A Q++G  +   G+T ++AT+V  +  K+G +F PL ++Y+E   A G
Sbjct: 14  DGQIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLPLIIDYKENYSAGG 73

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIPGG+++RE RP++ E+L  R+IDR +RPLF + +  E Q+II ++ +D    P  ++ 
Sbjct: 74  KIPGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLLSYDRNVLPDGLAG 133

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL 190
           + ASAA+ +SG+PF+GPV   ++      +++NP +    +  ++L + GT++++LM+E 
Sbjct: 134 LVASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDINLIIGGTKNSILMIEG 193

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP---IVIDSKDFSKLEEEMSQM 247
           E  ++SE+ ++  I   H   K  I A   L K    +     V ++ +F  L+ ++  +
Sbjct: 194 EMKEISENEIIYFIKIAHFFIKLQITAQINLIKNLKIKRNNLPVFNNLNFIYLKNKIKYI 253

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
             E +          +R +Q++ L  K+ +YF  ++   NE E   +FE ++ +++R ++
Sbjct: 254 FYEKIYCLYKQASSIIRFQQMEILLLKINNYFLYDNIILNEDEQNYIFEILKKEILREII 313

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L +  R+DGR  + +R I +Q   L   HGS++F RG+TQA+  VTLG+  D   +D++ 
Sbjct: 314 LKENHRLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVI 373

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
              +  F +HYNF P +TGE+  +   SRREIGHG LA+RA+  ++P     PYT+R+VS
Sbjct: 374 LQDQQKFYLHYNFPPFSTGEIKLLKGISRREIGHGNLAQRALKNIIPFKT--PYTIRVVS 431

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDH 485
           +I ES+GSSSMATVC S+LALMDAG+PI +PV+GI+MGL+ +   D+ IILSDI GDED+
Sbjct: 432 DILESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIINFLTDEAIILSDILGDEDN 491

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           +G MDFK+ GT  GITA QMD+   G +  +++ ++ +AK   L ++ ++   +   R  
Sbjct: 492 IGDMDFKMTGTKFGITACQMDINFPGSNYEMLLNSIFKAKNCLLFLIKKILNTIQYPRFS 551

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAE 602
             E +P++    I    I  VIG GGK+I+ I   T   + I+++   G ++I   +  +
Sbjct: 552 FKENSPKIFYFEIKKKLIGTVIGSGGKIIQEIKTSTNTNLKIEEEENLGIIEIYGKTDKQ 611

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A   I+++   P+  K+YK ++  + +    +     +        L          
Sbjct: 612 IKNAILKIKNLIFFPKKEKLYKVKIKSIKNSELIIILPSGQT-----MDLKKSENLNLYS 666

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSM 687
            +++GD  W+K+   +  GKI    
Sbjct: 667 FLRKGD--WIKIKSVNQNGKINFKR 689


>gi|218191180|gb|EEC73607.1| hypothetical protein OsI_08089 [Oryza sativa Indica Group]
          Length = 1030

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 404/755 (53%), Gaps = 75/755 (9%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E E  GR +  ETG++AR ++G+V+ +  +T VL+TV   +S +  +DF PLTV+
Sbjct: 59  ESFREEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVD 118

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQE+ YA G IP  Y+RRE  P E E+L  R+IDR IRPLF   + +E Q+++NV+  D 
Sbjct: 119 YQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDG 178

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           +  P V++  A+SAALMLS +P+ GP+   +V  I+G +VLNP +DE     L+L  + +
Sbjct: 179 KQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACS 238

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKD 236
           +D  LM++++A +++E  +   +   H E    I    +LAK   K+        I  K 
Sbjct: 239 RDKTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKS 298

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           + K+       I+E    S +   K+ R + ++++ + + +    E    +   +    +
Sbjct: 299 YEKIRTLSEAPIEEVFTDSTY--GKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVD 356

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            ++ +V+R  +++K +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG 
Sbjct: 357 TVRKQVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGA 416

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH-GRL-ARRAIHPVLP 414
             D Q +DS+ G     FM+HY+F P +  EV++ G  +RRE+GH  RL    A    L 
Sbjct: 417 PGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHVTRLPIAWAHTDGLH 476

Query: 415 QTAQFPYTLRIVSE-----------------------------------ITESDG----- 434
              +    LR+  E                                   +   +G     
Sbjct: 477 GPIRLGDELRVWIEHKALDPTGFLLTNRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYT 536

Query: 435 ----SSSMATVCGSSLA--------LMDAGVPISKPVAGIAMGLVKDGDD-------FII 475
               S  MA+   +S+A        LMDAG+P+ + VAG+++GLV + D        + I
Sbjct: 537 VRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQTTGDISSYRI 596

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R  IL+ M
Sbjct: 597 LTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEPARKARNQILDRM 656

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + +S +R      +PR+  ++   D +R ++       + I ++TGA+V++ D GTV I
Sbjct: 657 DQEISSARAFNDGSSPRLATLSFSSDSLRKLL----FHRKKIEQETGARVSVSD-GTVTI 711

Query: 596 ASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            + +   ++ A E +  +     EV K YKG V  + ++GAFV F G + GL+HIS+LS 
Sbjct: 712 VAKTQPIMDKAIEKVEFLVGREIEVGKTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSH 771

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           ++V+K SDVV  G  + +  +  D RG IKLS+K 
Sbjct: 772 DKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKA 806


>gi|242006246|ref|XP_002423964.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
           humanus corporis]
 gi|212507240|gb|EEB11226.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
           humanus corporis]
          Length = 708

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/699 (34%), Positives = 385/699 (55%), Gaps = 31/699 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           + +  G++A+ +DG    T+ +T V+AT V          F PLTV++Q++  A+G+IP 
Sbjct: 1   MIIGAGKLAKFTDGCATVTFKDTTVMATAVSSDKGGMYSGFVPLTVSFQQKAAALGRIPL 60

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE    ENEILISRMIDRS+RPLF   + NETQ++ N +  D E+ P V+S+ AAS
Sbjct: 61  NFLRRELGQNENEILISRMIDRSLRPLFPANFNNETQIVCNPLAMDGENFPDVLSINAAS 120

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG-TQDAVLMVELEAN 193
           AAL +S +P+ GPV   +V  ++   ++NP  +   + SL+L V    +  V+M+E   +
Sbjct: 121 AALAVSNIPWNGPVGAVRVGLVDDNIIINPDKNLLSKSSLNLVVVSKAKHYVVMLEGSCS 180

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIKEDL 252
            +  + +L AI  G +EC+ +I +I  LA +C K    ++ S+   +L + +  +  E L
Sbjct: 181 NILLNDLLRAIKKGVSECQKIIISIEHLASLCGKPKKEVNISEINEELYQSIQMLASEPL 240

Query: 253 RVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDK 310
                  I +K  R   I +++  +   FS +  ++N      +F  +  +V R  +L  
Sbjct: 241 NKIFQNSIHDKLSRDTAISEVRTLIEKKFSDKCENFN-----QIFSLVCKEVFRNYILIN 295

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL---- 366
            +R DGR    +R+I  +  L +  HGS+LF RG TQ    V L +      +D +    
Sbjct: 296 NIRCDGRLPVELRNIECESNLFKPLHGSALFQRGQTQVFCTVALDSPSSALKMDRISMLT 355

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           SG +  +F +HY F P AT E+ ++G   RREIGHG LA +A+   +P    FP+T+R+ 
Sbjct: 356 SGLKEKNFFVHYEFPPFATKEIGKLGPIGRREIGHGSLAEKALKANIP--ENFPFTIRLT 413

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-------DFIILSDI 479
           SE+ ES+GSSSMATVCG +LAL+DAGVP+ K  AG+AMG+V   D       D++IL+DI
Sbjct: 414 SEVLESNGSSSMATVCGGTLALLDAGVPLIKECAGVAMGVVTKWDDDKSGIIDYVILTDI 473

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G ED+ G MD KVAGT + ITA+QMD+K  G+   I++ ++ QAK+     L  M K +
Sbjct: 474 LGIEDYFGDMDMKVAGTKNHITAIQMDVKTPGLPIKIVMESITQAKQAISTTLTRMFKDV 533

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
              +    +  P +E + +P +Q    IG GG  I+    +TG ++  ++ G  +I +++
Sbjct: 534 DLQKKVKKDNWPVIEKLNVPVNQRAKFIGPGGINIKNFEMKTGVEITEENLGEFQIFAAN 593

Query: 600 LAEIEAAREMIRSITDVP-----EVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLS 653
              +  A ++I    +       E   IY   + ++ + G  V      +  L+ ++QL 
Sbjct: 594 KEALNEAMKIINEKINSQKEPVLEFGAIYTATITEIREHGCMVILYPAMQPVLIPVTQLD 653

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            ++V+  S + +K GD   VK    D   G ++LS KV+
Sbjct: 654 HKKVSHPSALNLKVGDQFKVKYFGRDPISGYMRLSRKVL 692


>gi|224418070|ref|ZP_03656076.1| polynucleotide phosphorylase/polyadenylase [Helicobacter canadensis
           MIT 98-5491]
 gi|253827399|ref|ZP_04870284.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313141607|ref|ZP_07803800.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|253510805|gb|EES89464.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313130638|gb|EFR48255.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 715

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/709 (38%), Positives = 419/709 (59%), Gaps = 34/709 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V + +  +  K    + A+Q  G+V    G  VVLAT+  D      +DF PLTV Y E+
Sbjct: 4   VTLSFLEKEEKYIFNKFAKQCSGSVYLQSGNNVVLATIAIDTQEVVEEDFLPLTVQYIEK 63

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA GK PGGY++RE++P + E L +R+IDRS+RPLF K Y   TQ+ + V+  D ++  
Sbjct: 64  AYAAGKFPGGYIKREAKPGDFETLSARIIDRSLRPLFPKDYCYPTQITLMVLSADEDADL 123

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAV 185
            ++++ AASAAL +S +P   PV   ++  I G++V+NP L   ++ +LDLFVSG ++ +
Sbjct: 124 QLLALNAASAALYVSEIPLSFPVSAVRIGRIEGEFVINPSLKALEESTLDLFVSGVKEDL 183

Query: 186 LMVEL---------------EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
           LM+E+                AN+LSE+ +++ +           +A  +  K C K P+
Sbjct: 184 LMIEMRSFGGVAIHQENTEFSANELSEEEMIEVLEIAKKAISQRSQAFEESFKDCVKTPL 243

Query: 231 VIDSKDFSKLEEEMSQMIK----EDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSW 286
           V+++K  + +  E+ + IK    E+L+       K  R   +    +K+   +  ++   
Sbjct: 244 VLENKRKNFVSSEIVEYIKESHLEELKDIIQSLSKTERNSLLHAFARKIQKEWEEKNLKE 303

Query: 287 NEGEIVSVFEDIQA---KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
            E     V E +     +++RT++L++  R DGR+ + VR IS +   L   H S+LF R
Sbjct: 304 IESLEKCVLESVLKIKREIIRTMILEESKRADGRELKEVRPISIETNFLPNAHSSALFTR 363

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
           G TQA+VV TLG   D Q  + L+     +  FM+HYNF P + GE S + AP RRE+GH
Sbjct: 364 GQTQALVVATLGGEMDAQSYELLTDKAPLKERFMVHYNFPPFSVGEASSISAPGRRELGH 423

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
           G LA+RA+   +        T+R+VSEI ES+GSSSMATVCG SLAL  AG+  +  +AG
Sbjct: 424 GNLAKRALEASVINGDLK--TIRLVSEILESNGSSSMATVCGGSLALAAAGIKCTSLIAG 481

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           +AMGLV + D + IL+DI G EDH G MDFK+AG+  GITAMQMD+K+GG+   I+  AL
Sbjct: 482 VAMGLVCENDKYAILTDIMGLEDHDGDMDFKIAGSRRGITAMQMDIKLGGLKSEILQKAL 541

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
            QAK  R HIL+ M +   +  L      P  +I +I P +I +VIG  G+ I+ I+E+ 
Sbjct: 542 MQAKEARNHILDLMEEAKEKIVLN-ESVLPSSQIFSIEPSKIIDVIGQAGRTIKEIIEKF 600

Query: 582 GAKVNID-DDGTVKIASSSLAEIEAAR----EMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
              V+++ ++G VK++ S+  ++EAA+    ++I++  ++ ++  IY+G+V K+++FGAF
Sbjct: 601 SVAVDLNRENGEVKVSGSNKEKVEAAKMHILKIIKNPQELYKIGDIYQGKVKKIVEFGAF 660

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           V      DGL+HIS+++  R  K SDV+KEGD V V++L    + K++L
Sbjct: 661 VELPKGYDGLLHISKITNNREQKVSDVLKEGDNVEVEVLSL-SKNKVEL 708


>gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
 gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
          Length = 717

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 276/727 (37%), Positives = 419/727 (57%), Gaps = 60/727 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I+        +  ++A+Q+ G+VL   G++VVLATV  +    + +DF PLTV Y E+
Sbjct: 3   YSIQINQNLEIFDIDKVAKQAAGSVLMRVGKSVVLATVAREDKQVE-EDFLPLTVQYIEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVG+IPGGY++RE++P +NE L +R+IDRS+RPLF K Y   TQ+++ V+  D E   
Sbjct: 62  AYAVGRIPGGYIKRETKPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSGTQDAV 185
            V+S+ AAS AL LSG+P + PV G ++  IN ++VLNP      + +LDL+V+G +D +
Sbjct: 122 QVMSLNAASVALYLSGIPIKAPVCGVRIARINDEFVLNPSNSKLKESTLDLYVAGVKDEL 181

Query: 186 LMVELEA-----------------------------NQLSEDVVLDAIIFGHNECKPVIE 216
           LM+E+ A                             N+LSED +L A+            
Sbjct: 182 LMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVMNELSEDEILQALSVAKKAILNGSN 241

Query: 217 AISK--LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
           A  +        +E  + +  +  +L + + Q   ++++ +     K  R  +++ + K+
Sbjct: 242 AYEEAFFKHRKKEELELKEELENRELFDYIKQNFTKEVQFAINQMAKSERASELEKIAKE 301

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           ++    +    +N+ ++ +    ++ +++RT +L ++ R DGR    VR I  +  +L  
Sbjct: 302 LM-KLENIIDKYNQEDVFNALSKVKKELIRTQILKERKRADGRALNEVRAIEIETNILPN 360

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMG 392
            HGS LF RG TQA+VV TLG   D Q VD LS        FM++YNF   + GE S + 
Sbjct: 361 AHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPISERFMVNYNFPGFSVGEASPIK 420

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
           AP RRE+GHG L +RA++P +     +PY +R+VSEI ES+GSSSMATVCG SLAL  AG
Sbjct: 421 APGRRELGHGNLVKRALYPSVD--ENYPYVVRLVSEILESNGSSSMATVCGGSLALRAAG 478

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           V   K VAG+AMGLV +GD++ IL+DI G EDH G MDFKVAGT  GITA+QMD+K+GGI
Sbjct: 479 VSSIKLVAGVAMGLVLEGDEYAILTDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGI 538

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
            ENI+  AL QA+  RLHIL+ M +  S+  +   E  P++E+ ++ P +I ++IG  GK
Sbjct: 539 DENILKNALYQAREARLHILDLMEEANSQIIIN-EEVLPKLELFSVEPSKIVDIIGQAGK 597

Query: 573 VIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE-----------VN 620
            I+ I+E+ G  +++D + G VKIA +   +I+AA++ I SIT   +             
Sbjct: 598 TIKEIIEKFGVSIDLDREKGEVKIAGNQSEQIKAAKDYIISITSKGKKFSKNLTQFKIGE 657

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + ++ +V KV  FGAFV      DGL+H S++ T+        + E D V VK+ +    
Sbjct: 658 EFFEAEVKKVAPFGAFVGLKDGVDGLLHSSKMKTK--------LSENDKVDVKISEI-KN 708

Query: 681 GKIKLSM 687
           GKI + +
Sbjct: 709 GKISVDL 715


>gi|257460281|ref|ZP_05625384.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
           RM3268]
 gi|257442346|gb|EEV17486.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
           RM3268]
          Length = 704

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/714 (37%), Positives = 402/714 (56%), Gaps = 48/714 (6%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           +IE  G     +  ++A+Q+ GA L     TVVLATV      +  +DF PLTV Y E+ 
Sbjct: 4   KIEVNGNTEIFDINKVAKQAAGAALLRVKNTVVLATV-AREETQVQEDFLPLTVQYIEKM 62

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA G+IPGGY++RE++P + E L SR+IDRS+RPLF K Y   TQ+++ V+  D E    
Sbjct: 63  YAAGRIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVYVLSADPEVDLQ 122

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVL 186
           VV++ AASAAL LS +P + PV G ++ Y NG ++LNP     + S LDL+V+G  D +L
Sbjct: 123 VVALNAASAALYLSDIPIKAPVCGVRIGYENGNFILNPSNSTLKASVLDLYVAGVGDELL 182

Query: 187 MVEL-----------EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
           M+E+           + N+ SED+++DAI F          A  +      K    ++ K
Sbjct: 183 MIEMRSLPQINGDAQQMNEFSEDLMVDAIDFAAKAISAGSNAYEEAFLPLKKPDASLEYK 242

Query: 236 ---DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              +   + + +    K+ ++ +     K  R  +++ +  ++++   +  + W++  I 
Sbjct: 243 PEIEDEDIADFIDANYKDAVKAAINQMAKSERATELNKIVDQILATEVAAQNEWSKEVIS 302

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           SV    +  ++RT +++ + R DGR  + VR IS +  +L   HGS LF RG TQA+VV 
Sbjct: 303 SVIGKYKRGIIRTQIIEDRRRADGRALDEVRPISIETNILPCAHGSCLFTRGQTQALVVT 362

Query: 353 TLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           TLG   D Q  DSL+        FM +YNF     GE S + +P RRE+GHG LA+RA++
Sbjct: 363 TLGGDSDAQLSDSLTQLEPISERFMFNYNFPGFCVGEASPLKSPGRRELGHGNLAKRALY 422

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P +   +  P ++R+VSEI ES+GSSSMA+VCG +L+L  AGVP  K VAG+AMGL+ +G
Sbjct: 423 PSINLNS--PQSIRVVSEILESNGSSSMASVCGGALSLRAAGVPTLKLVAGVAMGLIFEG 480

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           +   +L+DI G EDH G MDFKVAGT  GITA+QMD+K+GGIS  ++  AL QA++ R H
Sbjct: 481 EKHAVLTDIMGLEDHDGDMDFKVAGTYEGITALQMDIKLGGISLEVLKEALAQARQARAH 540

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-D 589
           IL  M +  +   +   +  P++EI  +   +I ++IG GGKVI+ I E  G  +++D +
Sbjct: 541 ILGLMEQADAAIVIN-RDVLPKLEIFNVEASKIPDIIGQGGKVIKEITESFGVNIDLDRE 599

Query: 590 DGTVKIASSSLAEIEAAREMIRSITD---------------VPEVNKIYKGQVVKVMDFG 634
            G VKI  +  + +  A+E I SI                   ++ + + G V  V+DFG
Sbjct: 600 KGEVKIQGAKASGVSGAKEKILSIVSNSRDFRKPRGERKEVKFQIGEEFDGVVQSVLDFG 659

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSM 687
            F+      DGL+    ++T          K GD V V++   D +G KI L +
Sbjct: 660 TFISLRDGVDGLLRAKFITTPY--------KAGDVVRVRVT--DQKGTKISLEL 703


>gi|222823533|ref|YP_002575107.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
           RM2100]
 gi|257096671|sp|B9KFM1|PNP_CAMLR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222538755|gb|ACM63856.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
           RM2100]
          Length = 702

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/713 (37%), Positives = 397/713 (55%), Gaps = 44/713 (6%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
             +I         +T ++A+Q+ GAVL      VVLATV  +  + + +DF PLTV Y E
Sbjct: 2   RHKININNHIEIFDTDKVAKQAAGAVLMQEKNAVVLATVAREEKMVE-EDFLPLTVQYIE 60

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           + YA GKIPGGY++RE++P ++E L +R+IDRS+RPLF K Y   TQ+++ V+  D E  
Sbjct: 61  KAYAAGKIPGGYVKRETKPGDSETLSARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVD 120

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA 184
             V+S+ AAS AL LS +P + PV G ++  IN ++VLNP   E + S LDL+V+G +D 
Sbjct: 121 LQVMSLNAASVALYLSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDLYVAGVKDE 180

Query: 185 VLMVELEA-----------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK--EPIV 231
           +LM+E+ A           N+LSED  L A+ F  +          K      K  +   
Sbjct: 181 LLMIEMRALSNKKDNQHCMNELSEDDTLKALDFASSAILRGSNEYEKAFAAYRKNSKLEF 240

Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
               D  ++ + +       L+++     K  R  +I  + K++ S   +  + W   +I
Sbjct: 241 KIESDNIQIIDYIKNTYITKLKIAINQMAKSERASEILQIAKEIESESMAIENEWKFEDI 300

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                  + ++VR  ++++  R DGR  + VR I  +  +L   HGS LF RG TQA+VV
Sbjct: 301 EKALHVCKRELVRNQIINENKRADGRGLKDVRKIDIETNILPSAHGSCLFTRGQTQALVV 360

Query: 352 VTLGTREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
            TLG   D Q  D L+        FM++YNF   + GE S + AP RRE+GHG LA+RA+
Sbjct: 361 ATLGNDNDAQMSDMLTEKNPICEKFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRAL 420

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           +P +   A + +T+R+VSEI ES+GSSSMATVCG +LAL  AGV   K VAG+AMGLV +
Sbjct: 421 YPSVD--ADYIHTIRLVSEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFE 478

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            + + IL+DI G EDH G MDFKVAG+  GITA+QMD+K+GGI + ++  AL QAK  R 
Sbjct: 479 EEKYAILTDIMGLEDHDGDMDFKVAGSHDGITALQMDIKLGGIEQKVLQEALYQAKEARG 538

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID- 588
           +ILN M +   +  +      P+VEI  + P++I ++IG GGK I+ I+E+    +++D 
Sbjct: 539 YILNLMQEACEKIIVN-EAILPKVEIFNVDPNKIPDIIGQGGKTIKDIIEKFEVNIDLDR 597

Query: 589 DDGTVKIASSSLAEIEAARE--------------MIRSITDVPEVNKIYKGQVVKVMDFG 634
           D G VKIA      I  ++E                +      ++ + + G+V KV++FG
Sbjct: 598 DKGEVKIAGIDHNLISQSKEYILNLLHSKGSNKRRDKKEMPKFDIGEEFLGRVQKVVEFG 657

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            FV      DGL+H S        K  + ++ G  + VK+ +    GK+ L +
Sbjct: 658 VFVELKEGVDGLLHNS--------KIKEKLEVGHEIKVKVAEI-KNGKVSLDL 701


>gi|242310417|ref|ZP_04809572.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239522815|gb|EEQ62681.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 714

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/696 (38%), Positives = 405/696 (58%), Gaps = 34/696 (4%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + A+Q  G+V    G  VVLATV  D      +DF PLTV Y E+ YA GK PGGY++RE
Sbjct: 19  KFAKQCSGSVYLQSGNNVVLATVAIDTQEVVEEDFLPLTVQYIEKAYAAGKFPGGYIKRE 78

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++P + E L +R++DRS+RPLF K Y   TQ+ I V+  D ++   ++++ AASAAL +S
Sbjct: 79  AKPGDFETLSARIVDRSLRPLFPKGYCYPTQITILVLSADQDADLQLLALNAASAALYVS 138

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVEL---------- 190
            +P   PV   ++  I   +V+NP L + ++ SLDLFVSG  + +LM+E+          
Sbjct: 139 EIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVSGVNEDLLMIEMRTFGGIKTQE 198

Query: 191 -----EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMS 245
                 AN+L E+ +++A+    N      +   +  K   K  + ++    + + +++ 
Sbjct: 199 GQAIFSANELQEEEMIEALEIAKNAISQKSKLFVEHFKDYIKPSLNLEQTRKTYVCQKIL 258

Query: 246 QMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA- 300
           + I+     +L+       K  R   +    +K+   +  ++    +       E I   
Sbjct: 259 EYIQSEHLGELKGIIQSLSKTERHSLLMAFARKIQKEWEEKYPQDTQDLSKRTLETILKI 318

Query: 301 --KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +++R ++L++  R DGR  + VR IS     L   H S LF RG TQA+VV TLG   
Sbjct: 319 KREIIRAMVLEESTRADGRGLKEVRPISIDTNFLPNAHSSVLFTRGQTQALVVATLGGDM 378

Query: 359 DEQYVDSLSG--TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           D Q  + L+   + +  FM+HYNF P + GE S + AP RRE+GHG LA+RA+   +   
Sbjct: 379 DAQSYELLTNKASSKERFMVHYNFPPFSVGEASSISAPGRRELGHGNLAKRALEASIING 438

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
                T+R+VSEI ES+GSSSMATVCG SLAL+ AG+  +  VAG+AMGLV + D +++L
Sbjct: 439 D--MRTIRLVSEILESNGSSSMATVCGGSLALVAAGIECTSLVAGVAMGLVCENDKYVVL 496

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAG+  GITAMQMD+K+GG++  I+  AL QAK  R HILN M 
Sbjct: 497 TDIMGLEDHDGDMDFKVAGSRHGITAMQMDIKLGGLNMQILKDALNQAKEARNHILNLME 556

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKI 595
           +   +  L      P  +I +I P +I  VIG  GK I+ I+E+ G  ++++ ++G VK+
Sbjct: 557 EARGKIILN-ESVLPSSQIFSIEPSKIIEVIGQAGKTIKEIIEKFGVAIDLNRENGEVKV 615

Query: 596 ASSSLAEIEAAREMIRSIT----DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           + S+  ++EAA+E I  IT    D+ +V  IY+G+V KV++FGAFV      DGL+HIS+
Sbjct: 616 SGSNKEKVEAAKEHILKITKNLQDIYKVGDIYQGKVKKVVEFGAFVELPEGYDGLLHISK 675

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           ++  R  K SDV+  G+ V V++L  + + K++L +
Sbjct: 676 ITNSRDEKASDVLSVGEMVEVEVLSLN-KNKVELGL 710


>gi|255087891|ref|XP_002505868.1| predicted protein [Micromonas sp. RCC299]
 gi|226521139|gb|ACO67126.1| predicted protein [Micromonas sp. RCC299]
          Length = 791

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 254/707 (35%), Positives = 393/707 (55%), Gaps = 31/707 (4%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
            ETGR+AR +DGA++A+ G++ V+   V  R       FFPL V+Y+ER  A GKIP  +
Sbjct: 53  FETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIPPTF 112

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            RRE  P + E+L  R++DR+IRPLF K +  +T V   V+  D    P V+++  ASAA
Sbjct: 113 TRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVLAVNGASAA 172

Query: 138 LMLSGLPFEGPVVGAQVDYING--QYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEAN- 193
           L +S +P+ GPV   +V  +    + +LNP   + + S L LF +G ++  LM+E +A  
Sbjct: 173 LSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLTLFYAGNENRTLMIEAQAGT 232

Query: 194 ----QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDFSKLEEEMSQM 247
                + E VV  A+   H   K +IE   +L +   KE +     + + +KL  ++   
Sbjct: 233 ADEGGVPESVVASALRAAHEAAKVLIEPQRRLQRAIGKEKLDPVQQTPEQAKLRHDVFDR 292

Query: 248 IKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
             E LR      I  K+ R K++ +LK ++V+  + E  S+   ++   F  + ++V+R 
Sbjct: 293 SSEKLRALYKEEIQCKHTRGKRMAELKDEIVNSMTEEGMSFTNNDVEQAFFWVSSRVMRD 352

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ + K R+DGR    +R + A+  +L   HGSS+F RG+TQA+  VT+G   D Q +D+
Sbjct: 353 MIFEDKKRVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKLDA 412

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
             G      M+HY+F   +  E  R G  SRREIGHG LA +++  ++P   ++P+ +RI
Sbjct: 413 PVGPDNRRMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPFAVRI 472

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-------FIILSD 478
            +E  ES+GSSSMA VC  SLALMDAGVPI + V  I++GLV D D+       + +LSD
Sbjct: 473 NAETMESNGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVMDEDEQTGKVTRYELLSD 532

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFK+AGT  GIT +Q+D K  GI  +I++ A+  A   R  +++EM + 
Sbjct: 533 IMGLEDVLGDMDFKIAGTRGGITGIQLDCKPAGIPLDILIEAMDVASIARSAVIDEMDRA 592

Query: 539 LSESRL-QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI--------DD 589
           +S+ R     E   +   + +    I  +IG  G  IR +   TGAKV+I        DD
Sbjct: 593 ISKPRSRDDSEDGAQFTTVRMDRSLIGRLIGPKGDTIRELERTTGAKVSIHEEDDAGVDD 652

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
             T+ I + +   ++AA E I+ I  VP+   + K +VV  + +G F+     +DGL+H 
Sbjct: 653 QCTLGIFAGTRPGLDAALEKIQLIAWVPKEGDVVKAKVVNQLAYGWFLRLPNEQDGLLHA 712

Query: 650 SQ-LSTERVAKTSD-VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           S+ L T +V    D + + G+ V VK+ D  D G++ LS+K +    
Sbjct: 713 SEYLHTRKVDPMKDNIFQIGEEVLVKIKDVSD-GRVGLSVKALSPAP 758


>gi|296273302|ref|YP_003655933.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097476|gb|ADG93426.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 725

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 272/723 (37%), Positives = 407/723 (56%), Gaps = 53/723 (7%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
           E E  G+    E  ++A+Q++G+VLA  G  V+LATVV +      +DF PLTV Y E+ 
Sbjct: 6   EFELNGKDEIFEFNKVAKQANGSVLAKCGNAVILATVVSEFDNPGSEDFTPLTVQYIEKA 65

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           YA  KIPGG+ +RES+P+E E L SR+IDRS+RPLF K Y   T + + V+  D +    
Sbjct: 66  YAAAKIPGGFFKRESKPSELETLTSRIIDRSLRPLFPKGYVYPTTITVMVLSADKDVDLQ 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
            +++ AASAAL  S +P +  V G ++  I+G+Y++NP + +    +LDL+V+G++D +L
Sbjct: 126 TLALNAASAALYTSNIPVKKSVAGVRIAKIDGEYIVNPNVTDMVNSTLDLYVAGSKDELL 185

Query: 187 MVELEA--------------------NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           M+E+ A                    N+++E+ +++AI       K          +   
Sbjct: 186 MIEMRAISSEDMVEVDIEAFSKIHKTNEMTEEELVEAISIAQIALKEANSTYETGFENVC 245

Query: 227 KEPIVIDSKDF---SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH 283
           KE   ++  +F     L   +      D++ +     K  R  ++ DL KK+      E+
Sbjct: 246 KEKHEVELVEFTISEDLIVHVKNTYLHDVKDAVKKLAKSERATELKDLAKKIA---KDEY 302

Query: 284 SSWNEGEIVSVFED---IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            + NE    +V+E    ++ +VVR ++++  VR DGR  +TVR IS    +L   H S L
Sbjct: 303 CTSNEFPFENVYEAVSIVKKEVVRAMIVNDHVRADGRGLKTVRPISIDTNILPSAHSSCL 362

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRRE 398
           F RG+TQA+VV TL   +D Q  ++L+       +FM+HYNF   + GE   M    RRE
Sbjct: 363 FTRGETQALVVATLAGAKDGQMFETLNEKSTSMENFMVHYNFPGFSVGEAKPMFGVGRRE 422

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           +GHG L +RA+   + +   F  T+R+VSEI ES+GSSSMATVCG SLAL  AGVPIS  
Sbjct: 423 LGHGNLGKRALEATIDR--DFADTVRLVSEILESNGSSSMATVCGGSLALKAAGVPISGL 480

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VAG+AMG+V +GD   +L+DI G EDH G MDFKVAG  +GITA+QMD+K+GGI  +++ 
Sbjct: 481 VAGVAMGMVVEGDKHCVLTDIMGLEDHDGDMDFKVAGPKTGITALQMDIKLGGIELSVLK 540

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            AL QAK GR HIL  M +  +E         P +E  AI P +I  VIG  G  I+ I+
Sbjct: 541 EALLQAKEGREHILTLMEEASAEIIP--SPALPLMEQFAIDPSKIMVVIGKAGSTIKEII 598

Query: 579 EQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS---------------ITDVPEVNKI 622
           E+    +++D D G VK+A  +   +  A   I++                  + +  ++
Sbjct: 599 EKFSVSIDLDRDSGNVKVAGDNKQNVLDACAHIKTISDNAPSRKQNEKIIFDSLYKEEEV 658

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            +G V +++DFGAF+      +GL+HIS++S ERV   SDV+  GD V +K+L    R +
Sbjct: 659 LEGIVERIVDFGAFMKLPKGGEGLLHISKISKERVKNVSDVLSVGDKVELKVLKV-SRDR 717

Query: 683 IKL 685
           I+L
Sbjct: 718 IEL 720


>gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 726

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 288/733 (39%), Positives = 418/733 (57%), Gaps = 58/733 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            + V++E   R  +   G +A+Q++G+     G+TV+LATVV D +     DF PLTV Y
Sbjct: 2   TYDVKLELENRVEEYSFGDVAKQANGSAWIKSGKTVILATVVIDETEIVKDDFLPLTVQY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+TYA GKIPGG+ +RE++P++ E L SR++DRS+RPLF K + + TQ+ I V   D E
Sbjct: 62  IEKTYAAGKIPGGFFKRETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSADSE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           S   V+++ AASAAL  S +     V   +   ++G+ +LNP L + +  SLDL++SGT+
Sbjct: 122 SDMQVLALNAASAALFTSDIDVNSSVCAVRAAKVDGELILNPTLTQLKNSSLDLYLSGTK 181

Query: 183 DAVLMVELEAN-------QLSEDVVLDAII-------------FGHNECKPVIEAISKLA 222
           D +LM+E+ +        + + + +LD ++                     +IE + K  
Sbjct: 182 DDLLMIEMRSIGSEKVEVEDTYEPMLDPMMDPSLGTIVVDTHVSNAMPEDELIEVLDKTE 241

Query: 223 K---------MCAKEPIVIDSKD----FSKLEEEMSQMIKE----DLRVSCFIPEKYVRC 265
           K           A  P   D K        L EEM   +KE    D+  +     K  R 
Sbjct: 242 KLLFASNVEYEVAFGPYQKDIKPLDLKLDSLNEEMVAFVKERHMKDIADAMNQMAKSERS 301

Query: 266 KQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDI 325
             + +L+K++++     +  W+E E+ +  E ++ + VR+ +L++KVR DGR    +R I
Sbjct: 302 TALRNLRKRILTN----NIEWDELELKAAIEAVKKEQVRSQILNEKVRADGRKLTEIRPI 357

Query: 326 SAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPC 383
           +    +L   H S LF RG TQA+VV+T+G  +D Q  + L   GTQ  +FM+HYNF   
Sbjct: 358 TIDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGTQNENFMVHYNFPGF 417

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           + GE S +    RRE+GHG LA+RA+ P++    Q   T+R+VSEI ES+GSSSMATVCG
Sbjct: 418 SVGEASPVMGTKRRELGHGNLAKRALEPIIDLDGQ---TVRLVSEILESNGSSSMATVCG 474

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
             +AL  A +  S  VAGIAMG+V DG+ + ILSDI G EDH G MDFKV G+  GITAM
Sbjct: 475 GYMALRAADIETSDTVAGIAMGMVSDGERYAILSDIMGLEDHDGDMDFKVTGSKEGITAM 534

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           QMD+K+GGIS NI+  AL QAK GR HI++ M    S+         P  E   I P  I
Sbjct: 535 QMDIKLGGISLNILKEALYQAKEGRAHIIDIMLDAESKIEFN-DGVLPSTEFFHIDPGFI 593

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
             +IG  GK IR ++E+    ++ID  +G VKI   +   ++ A+E I+ I + P+  KI
Sbjct: 594 GEIIGQAGKTIREMIEKFEVAIDIDKKEGKVKITGKNKEGVQGAKEHIQKIVNAPKKEKI 653

Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKL 674
                  Y+G V K++DFGAFV      DGL+HIS+LS  +RV    DV+KEG+ V V++
Sbjct: 654 KYEVGEKYEGTVKKIVDFGAFVELPDGTDGLLHISKLSKDKRVENVHDVLKEGEKVTVEI 713

Query: 675 LDFDDRGKIKLSM 687
           L+F    KI L +
Sbjct: 714 LEF-KGNKISLGL 725


>gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 746

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 279/747 (37%), Positives = 409/747 (54%), Gaps = 71/747 (9%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
            +I    +    + G++A+Q+ GA L     TV+LATV      +  ++F PLTV Y E+
Sbjct: 3   YKIYVNNQEEIYDIGKVAKQAAGAALLKIKNTVILATV-ARDDTQVSENFVPLTVQYVEK 61

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YAVGKIPGGY++RE++P + E L SR+IDRS+RPLF K Y   TQ+ + V+  D E   
Sbjct: 62  SYAVGKIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDL 121

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AA AAL LS +P    V G ++ Y++G YV+NP      + +LDL+V+GT++ +
Sbjct: 122 QVAALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTKEEL 181

Query: 186 LMVELEA--------------------------------NQLSEDVVLDAIIFGHNECKP 213
           LM+E+ +                                N+  ED +L AI    N    
Sbjct: 182 LMIEMRSIASMESVSLPVMAIDPMLDPTLAENMMAKQVINEFPEDAILAAIDTAQNAITE 241

Query: 214 VIEAISKLAKMCAKEPIVIDSKDF---SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD 270
              A         KE  ++D K       +   + +  KE +  +     K  R  ++  
Sbjct: 242 ATTAYENTFVSLKKEDAILDYKQDLTSDAIFAYIDEFYKEAVYDAINQMAKSERASELSK 301

Query: 271 LKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVG 330
           +   ++    +    W++  + SV +  + K+VR ++++K+VR DGR    +R IS +  
Sbjct: 302 IVDAILKDNIATLEGWDKALVDSVLQTYKKKIVREMIVEKRVRADGRKLTEIRPISIETN 361

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEV 388
           LL   HGS LF RG TQA+V+ TLG  +D Q  D L+      + FM++YNF   + GE 
Sbjct: 362 LLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSSVSDTFMVNYNFPGFSVGEA 421

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
           S + AP RRE+GHG LARRA+ PV+        T+R+VSEI ES+GSSSMAT+CG +LAL
Sbjct: 422 SPLRAPGRRELGHGNLARRALEPVVDINRL--QTIRLVSEILESNGSSSMATICGGALAL 479

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
             AGV I K VAGIAMGLV +GD   +LSDI G EDH G MDFKVAGT  GITA+QMD+K
Sbjct: 480 KAAGVEIEKLVAGIAMGLVFEGDKHAVLSDIMGLEDHDGDMDFKVAGTKDGITALQMDIK 539

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           +GGIS +++  AL QA+ GR HIL  M K   E  +      P++E+  + P +I ++IG
Sbjct: 540 LGGISRDVLKEALYQAREGREHILAIMEKASEEIVIN-NAVLPKLELFNVDPSKIVDIIG 598

Query: 569 MGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEV-------- 619
             GK IR I+E+    +++D + G VKIA  +  +++AA+E I  IT+            
Sbjct: 599 QAGKTIREIIEKFEVSIDLDREKGEVKIAGENKEKVDAAKEHIIQITNKASFGGRGGHGR 658

Query: 620 -------------------NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                              +++  G V +++DFGAFV   G  DGL+H+S+++  RV K 
Sbjct: 659 DRDNKYPTKESKPVPTFIQDEVVDGTVKRIVDFGAFVELPGGIDGLLHVSKIADHRVDKV 718

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           SD +     V VK+L      KI+L +
Sbjct: 719 SDYLALEQKVRVKILK-QAGNKIELEL 744


>gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
 gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
          Length = 727

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/731 (38%), Positives = 415/731 (56%), Gaps = 53/731 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            + V IE   R      G +ARQ++G+     G++V+LATVV D +     DF PLTV Y
Sbjct: 2   TYDVNIELENRVEDYSFGDVARQANGSAWLKSGDSVILATVVIDETEIVKDDFLPLTVQY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+TYA GKIPGG+ +RE++P++ E L SR++DRS+RPLF K + + TQ+ I V     +
Sbjct: 62  IEKTYAAGKIPGGFFKRETKPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSAGSD 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
           +   V+++ AASAAL  S +     V   +   ++G+ VLNP L +  + +LDL++SGT+
Sbjct: 122 ADLQVLALNAASAALYTSDIDINTSVSAVRAAKVDGELVLNPTLSQLKEATLDLYLSGTK 181

Query: 183 DAVLMVELEA-----NQLSEDVVLDAIIFGH-----------------NECKPVIEAISK 220
           D +LM+E+ +      Q+ E+ ++D +I                       K   +  + 
Sbjct: 182 DDLLMIEMRSFGSNETQIEENYIIDPMIDPALSMPSILVHKSNAIAEDELIKIFEKTQNA 241

Query: 221 LAK----------MCAKEPIVIDSKDF---SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267
           L               KE + I+ K     ++++  +      D+  +     K  R   
Sbjct: 242 LFASNTKYEEAFGDYKKETVAIECKAHVINTEMQTYIRDNHMSDIAAAMNQMAKSERSTA 301

Query: 268 IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           +  L+K ++   +       E  +    E ++ + VR+ +L+++VR DGR    VR IS 
Sbjct: 302 LRQLRKNIIKTKTEWSDVEQEVSLKDAIESVKKEQVRSQILNERVRADGRALTEVRPISI 361

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQRNDFMMHYNFLPCAT 385
              +L + H S LF RG+TQA+VV+T+G  +D Q  +SL+  GTQ  +FM+HYNF   + 
Sbjct: 362 STNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGTQNENFMVHYNFPGFSV 421

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSS 445
           GE S +    RRE+GHG LA+RA+ P++    Q   T+R+VSEI ES+GSSSMATVCG  
Sbjct: 422 GEASPIMGTKRRELGHGNLAKRALEPIVDLDGQ---TVRLVSEILESNGSSSMATVCGGY 478

Query: 446 LALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AL  A +  S  VAGIAMG+V DGD + ILSDI G EDH G MDFKV G+  GITAMQM
Sbjct: 479 MALRAADIDTSDTVAGIAMGMVSDGDKYAILSDIMGLEDHDGDMDFKVTGSKDGITAMQM 538

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIR 564
           D+K+GGIS +I+  AL QAK GR HI++ M     E +++  +   P  +   I P  I 
Sbjct: 539 DIKLGGISLDILKEALYQAKDGRSHIIDIMIDA--EQKIEFNDGVLPSTDFFHIDPSVIG 596

Query: 565 NVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI- 622
            VIG  GKVIR I+E+    ++ID  DG VK+   + + +  ARE I  I + P++ KI 
Sbjct: 597 EVIGQAGKVIREIIEKFEVAIDIDKKDGKVKVTGKNKSAVLGAREHIEGIANSPKIEKIK 656

Query: 623 ------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                 Y+G V K++DFGAF+      DGL+HIS++S +RV K SDVV EGD + V++L+
Sbjct: 657 YQVGDKYEGVVKKIVDFGAFIGLPDGTDGLIHISKISDQRVEKVSDVVSEGDKIMVEILE 716

Query: 677 FDDRGKIKLSM 687
           F    KI L  
Sbjct: 717 F-KGNKISLGR 726


>gi|237753403|ref|ZP_04583883.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375670|gb|EEO25761.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 736

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 264/716 (36%), Positives = 406/716 (56%), Gaps = 56/716 (7%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +A+Q+ G+V    G  V+LAT+  D      +DF PLTV Y E+ YA GK PGGY++RE+
Sbjct: 20  VAKQASGSVYYKSGNNVLLATLAVDCDCIVEEDFLPLTVQYIEKAYAAGKFPGGYIKREA 79

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +P + E L +R++DRS+RPLF K Y   TQ+ I V+  D ++   ++++ AASAAL  S 
Sbjct: 80  KPGDFETLTARIVDRSLRPLFPKDYCYPTQITIMVLSADNDADLQLLALNAASAALYTSE 139

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVEL----------- 190
           +P    V G ++  I  ++V+NP L E +  +LDLFVSG  + +LM+E+           
Sbjct: 140 IPLNFAVNGVRIGRIGNEFVVNPSLKEMEQSTLDLFVSGVNEDLLMIEMRTFGGVDIQTP 199

Query: 191 ------------------EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
                              AN+L+E  ++ A+           + + +  K C KEP+ +
Sbjct: 200 SNPLSLVTTLMEDKKAEFSANELTEIELMQALEIAKTHISKKSKLVEEHFKACIKEPLEL 259

Query: 233 DSKDFSKLEEEMSQMIKE----DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS---S 285
                + + + + + IK+     LR       K  R  ++    K++V  ++  +     
Sbjct: 260 TQARKNYICQSVQEFIKQGYLGGLREILAELSKTERHSRLKAFAKQIVQDYAKSNPQDIE 319

Query: 286 WNEGEIVSVFEDIQAKVV-RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
           + E  +      +Q + + R ++L + +R DGR  + VR IS +  +L + H S LF RG
Sbjct: 320 FLEQRVNETLN-LQKRAMLRAMILQEGIRADGRGLKEVRPISIETNILPKAHSSVLFTRG 378

Query: 345 DTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
            TQA+VV TLG   D Q  + L   GT +  FM+HYNF P + GE   +GA  RRE+GHG
Sbjct: 379 QTQALVVCTLGGEMDAQSYELLTDKGTSKERFMVHYNFPPFSVGEAIPIGATGRRELGHG 438

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA+RA+   +    Q   T+R+VSEI ES+GSSSMA+VCG SLAL  A +  +  +AG+
Sbjct: 439 NLAKRALECSVINGDQK--TIRLVSEILESNGSSSMASVCGGSLALAAADIECTSLIAGV 496

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGLV +G+ + +L+DI G EDH G MDFKVAG+ SGITA+QMD+K+GG+S  I+  AL 
Sbjct: 497 AMGLVCEGEKYAVLTDIMGLEDHDGDMDFKVAGSKSGITALQMDIKLGGLSTEILECALL 556

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QAK  R HIL  M     +  L      P  +  AI P +I  VIG  GK I+ I+E+  
Sbjct: 557 QAKEARFHILEIMESAKEKIVLN-TVALPSSQTFAIHPSKIVEVIGQAGKTIKEIIEKFE 615

Query: 583 AKVNID-DDGTVKIASSSLAEIEAAREMIRSIT----------DVPEVNKIYKGQVVKVM 631
             ++++ D+G VK++  +  +++AA+E I  IT          ++ +V  +Y+G+V KV+
Sbjct: 616 VAIDLNRDNGEVKVSGGNKEKVDAAKEYIIGITSASSDKPSIAELYKVGDVYEGRVKKVV 675

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           DFGAFV      DGL+HIS++++ R A+ SD +  GD + V++L   ++ K++L +
Sbjct: 676 DFGAFVELPHNYDGLLHISKITSSRGAQASDYLSVGDLLRVEVLSL-NKNKVELGL 730


>gi|313681466|ref|YP_004059204.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154326|gb|ADR33004.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
           DSM 16994]
          Length = 725

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/732 (37%), Positives = 415/732 (56%), Gaps = 58/732 (7%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            + VE+    +       ++A Q++GA     G+TV+LATVV D +    +DF PLTV Y
Sbjct: 2   KYNVELTLQNKTEAYAFNQVAAQANGAAWLKCGDTVILATVVIDETDFVDEDFLPLTVQY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E++YA GK PGG+++RE++P++ E L SR++DRS+RPLF K + N  Q+ + V+  D E
Sbjct: 62  IEKSYAAGKFPGGFIKRETKPSDFETLTSRIVDRSLRPLFPKGFANPVQITVMVLSADRE 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +   V+++ AASAAL +S +     V   +V  I+G+ V NP L + Q  +LDL+++G++
Sbjct: 122 ADLQVLALNAASAALYVSDIDIFNSVSAVRVGKIDGEIVFNPTLSQLQKSTLDLYLAGSK 181

Query: 183 DAVLMVELE--------------------------------ANQLSEDVVLDAIIFGHNE 210
           + +LM+E++                                +N +SED ++  +      
Sbjct: 182 EDMLMIEMQTLGSDEVEILDIGIIDPLVDPAMSTPSVAVRRSNAMSEDELIRILASAQIA 241

Query: 211 CKPVIEAISKLAKMCAKEPIVIDS---KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267
                 A     K  AK P  + +   +   ++ E +  +  +DL+       K  R   
Sbjct: 242 LSEANSAYESAFKSYAKPPFELQTIVSEISGEMIEYVRSVHTDDLKRGINQMAKTERSTA 301

Query: 268 IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           +  ++K ++     E   WNE E+    E ++  +VR  +LD+KVR DGR    VR IS 
Sbjct: 302 LRTIRKTILK----EKPEWNEHELKKAIESVKRSMVRAQILDEKVRADGRALNEVRPISI 357

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCAT 385
           +  +L   H S+LF RG TQA+VV+TLG  +D Q  ++L  SGTQ   FM+HYNF   + 
Sbjct: 358 ETNVLPSAHASALFTRGQTQALVVLTLGGAKDAQMFENLTDSGTQNEGFMVHYNFPGFSV 417

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSS 445
           GE S +GAP RRE+GHG LA+RA+     +  Q   T+R+VSE+ ES+GSSSMATVCG  
Sbjct: 418 GEPSPIGAPRRRELGHGNLAKRALEGACVRNGQ---TIRLVSEVLESNGSSSMATVCGGY 474

Query: 446 LALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +AL    + ++ P+AG+AMG+V++G    IL+DI G EDH G +DFKVAG+  GITAMQM
Sbjct: 475 MALRAGDIEVADPIAGVAMGMVQEGSRHAILTDIMGLEDHDGDLDFKVAGSKGGITAMQM 534

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIR 564
           D+K+GGI  +++  AL QAK  R HI++ M  + SE +++L E   P  ++  I P  I 
Sbjct: 535 DIKLGGIHLDVLKEALYQAKEARSHIIDIM--ISSEDKIELNEGTLPSTDLFHIDPSFIG 592

Query: 565 NVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           ++IG  GK IR I+E+    ++ID   G+VK+   +   +  AR+ I  I       +  
Sbjct: 593 DIIGQAGKTIREIIERFDVTIDIDKKKGSVKLTGKNRDGLRGARDHIEGIVSGATPVEKV 652

Query: 624 K--------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           +        G+V K++DFGAF+   G  DGL+HIS+LS   V++ SDVV EGD + V+++
Sbjct: 653 EYKVGDVVKGKVKKIVDFGAFIELPGGVDGLIHISKLSDGHVSRVSDVVNEGDELMVEIV 712

Query: 676 DFDDRGKIKLSM 687
           +F    KI L  
Sbjct: 713 EF-KGNKIGLGR 723


>gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
 gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
          Length = 693

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 254/680 (37%), Positives = 403/680 (59%), Gaps = 23/680 (3%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +A+Q+ G+VL   G TV+LA+V  D    +G DF PL+V Y E++YA GKIPGG+++RE 
Sbjct: 20  VAKQASGSVLYERGGTVILASVAIDDKDVEG-DFLPLSVQYIEKSYATGKIPGGFIKREG 78

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +P E E L SR+IDR++RPLF K Y+  T + + V+ +D ES   V ++ AA+ AL+LS 
Sbjct: 79  KPGEFETLTSRIIDRTLRPLFPKHYRKTTHISVFVLSYDGESDLQVCALNAAANALLLSA 138

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEAN-----QLS 196
            PF  P    ++  I+G +VLNP   E   S LDL++SG+   +LM+E++        ++
Sbjct: 139 APFCVPTAAVRIGRIDGVFVLNPSRSELANSALDLYISGSFGDLLMIEMKGGSTKESGIN 198

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL---- 252
           E+ +L+AI       + +     +      K P+ +  K     +EE+  ++K++     
Sbjct: 199 EEELLEAITLAKAHIQELSSLYEQNIAPHKKAPLALPEK-IELFDEEIDTLLKQEYFSRT 257

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
           +       K  R K ++ L +++   + +    W+  ++       + +V+R  +L++ +
Sbjct: 258 QEILNQMSKSERNKDLESLGEEIYQKYQN-FKPWSLEQVQYTLWQYKKQVMRNQVLERGI 316

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG--TQ 370
           R DGR +  VR IS +  +L   HGS LF RG TQ++VV TLG+  D Q  ++L+    Q
Sbjct: 317 RADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLNDSIPQ 376

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           + +F  HYNF   + GE   +G+  RRE+GHG LA++A+   + +      TLR+VSEI 
Sbjct: 377 KENFTFHYNFPGFSVGEALMIGSVGRRELGHGNLAKKALEDSIIEKD---RTLRLVSEIL 433

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES+GSSSMA+VCG SLA+   G+  S  VAG+AMGL+K+G ++ +L+DI G EDH G MD
Sbjct: 434 ESNGSSSMASVCGGSLAICACGMESSGLVAGVAMGLIKEGSEYAVLTDIMGLEDHDGDMD 493

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAG ++ ITAMQMD+K+GG+   I+  AL QA+  RLHIL  M +  +   +   +  
Sbjct: 494 FKVAGNENFITAMQMDIKLGGLELGILKEALYQARDARLHILQIMQEARARIVVN-HDII 552

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREM 609
           P+VE   +PP +I  +IG GGK I+ I+E+ G  +++D + G VK+ +++   ++  +  
Sbjct: 553 PKVETFCVPPSKIIEIIGSGGKTIKEIIERFGVSIDLDREKGEVKVFATNAKTLQDCKNY 612

Query: 610 IRSITDVPEV--NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           I  I        N+I+ G V K++DFG FV      DGL+HIS+ + ++  K+SD  +EG
Sbjct: 613 ILQIIGSQGYVENEIFLGVVKKIVDFGVFVSLPRGGDGLLHISKFAQDKSKKSSDYFQEG 672

Query: 668 DTVWVKLLDFDDRGKIKLSM 687
             +  K+L F+ +GK+ L +
Sbjct: 673 QKISCKILGFN-KGKVDLDL 691


>gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1]
 gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1]
          Length = 729

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 259/725 (35%), Positives = 406/725 (56%), Gaps = 51/725 (7%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +   +EI       K E  +IA+Q+ GAV+   G+ V++A V  D    + +DF PLTV
Sbjct: 1   MNEQIIEINLNNLDEKYEFNKIAKQASGAVMYRQGKAVLIAAVAVDEKAVE-EDFLPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y ER+YA  KIPGG+++RE++P + E L SR++DRS+RPLF K +     + + V+  D
Sbjct: 60  QYMERSYAAAKIPGGFIKRETKPGDFETLTSRIVDRSLRPLFPKGFYYPVTISVMVVSSD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSG 180
            E    V ++ AA+AAL +S +  +  +   +V  I  + VLNP L  +D+  LDL V G
Sbjct: 120 SEVDMQVAALHAANAALYVSDISVQRSIAAVRVGKIEDELVLNPTLSQQDESVLDLLVVG 179

Query: 181 TQDAVLMVEL------------------------------EANQLSEDVVLDAIIFGHNE 210
           ++  ++M+E+                              E N++  + ++DAI F    
Sbjct: 180 SEQDIIMIEMRAIASEKIDDIEMDMIDPMMGGVPLILEHQECNEVDNEALVDAIAFAAKA 239

Query: 211 CKPVIEAISKLAKMCAKEPI---VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQ 267
            +       K      + P+   + + K   +L   + +   E +  +     K  R  +
Sbjct: 240 IEEASAIYEKEFTPVMRTPLGLSLAEEKVDEELYAYIKENYSEAVAKAISHMAKSERSTE 299

Query: 268 IDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           +  ++ +++    SE    ++  +  V +  +  VVR ++LDK +R DGR  + VR I+ 
Sbjct: 300 LKKVRAQIMEALESEGKEADKELVSKVLDRYKTTVVRDMILDKGIRADGRGLDEVRPITI 359

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL--SGTQRNDFMMHYNFLPCAT 385
           +  +L   HGS LF RG TQA+V  TLG ++D Q  + +    TQ  +FM+HYNF   + 
Sbjct: 360 ETNILPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNTQSENFMVHYNFPGYSV 419

Query: 386 GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSS 445
           GE   +GAP RRE+GHG LA+RA+ PV+P    +  T+R+VSE+ ES+GSSSMAT+CG +
Sbjct: 420 GEAKFIGAPGRRELGHGNLAKRALEPVIPI--NYDGTIRLVSEVLESNGSSSMATICGGA 477

Query: 446 LALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           LAL  A V + + VAGIAMGLV DG+   +L+DI G EDH G MDFK+AGT +GITA+QM
Sbjct: 478 LALRAAEVDMVELVAGIAMGLVTDGERVAVLTDIMGLEDHDGDMDFKIAGTRNGITALQM 537

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D+K+GGI    + +AL++A +G+ HIL+ M +   E +++  +  P  E  +I P +I +
Sbjct: 538 DIKLGGIDLITLKVALEKAAQGKDHILDLMEEA--EKKMESSQALPSTEHFSINPQKIAD 595

Query: 566 VIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP------- 617
           +IG  G  IR I+E+    +++D D G VK++     ++ AA+E I  I + P       
Sbjct: 596 IIGKAGATIRDIIEKFEVSIDLDRDKGGVKLSGHDKEKVAAAKEHIEKIANAPVRKQMQY 655

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K Y G+V K++DFG FV      D L+HIS+++ ERV   ++   EGD + V +++ 
Sbjct: 656 EVGKTYVGKVKKIVDFGIFVEMPDGFDALLHISKVAKERVNNLNERYHEGDDITVVVME- 714

Query: 678 DDRGK 682
             +GK
Sbjct: 715 -QKGK 718


>gi|324505266|gb|ADY42265.1| Polyribonucleotide nucleotidyltransferase 1 [Ascaris suum]
          Length = 746

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/704 (33%), Positives = 393/704 (55%), Gaps = 28/704 (3%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGKIP 74
           ++ ETG +AR +DGA + + G+  +LAT V +R        F PLTV++++   AVG+IP
Sbjct: 44  IQFETGHLARFADGAAVVSQGDNAILATAVGERDSSSSTTSFLPLTVDFKQSAAAVGRIP 103

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
             YLRRE + ++ +IL SR+IDRSIRPLF + Y++ TQVI   +  D      V+ + AA
Sbjct: 104 TNYLRREMQQSDADILASRIIDRSIRPLFPEQYRDATQVICKPLCLDETGDGVVLGINAA 163

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA--VLMVELE 191
           S AL +S +P+ GPV   +V  I+ + V+NP  +E +   L++ +SG  D   VLM++++
Sbjct: 164 STALAVSNIPWNGPVGAVRVAIIDDRVVVNPARNELKRAKLNMVLSGCGDGKRVLMIDMD 223

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKE 250
           A +++   + +    G      +  AI K+     K    + + +  + L EE++++  E
Sbjct: 224 ACEVNAVKLDECFEAGLEAVARITAAIEKIVSEAGKIKRELAAPEVDEALIEEVAKLSSE 283

Query: 251 DLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVML 308
            L   +S    +K  R   I +L  ++++ F+ E  S     I  +F  +  K +R ++L
Sbjct: 284 RLYYILSDTSHDKTSRDVAIAELGDEVLAAFTDESPSV----IRQIFSSLTKKTLREMVL 339

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS--- 365
           +  VR DGR     R I+ +V L ++ HGS+LF RG TQ +  VT        + DS   
Sbjct: 340 ETSVRCDGRALNDFRPINIEVDLYKKLHGSALFQRGQTQVLGTVTFDAPSAAFHPDSISQ 399

Query: 366 -LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +R  FM+HY F P A  E+S     +RRE+GHG LA +A+  ++P    FPY++R
Sbjct: 400 LLGAQRRKMFMLHYEFPPYAVNEISSSRGLNRRELGHGALAEKALQHLIP--ENFPYSVR 457

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD--DFIILSDISGD 482
           +  ++ ES+GSSSMA+VC  SLAL+DAGVP+  P AG+A+GL+ + D   + +L+DI G 
Sbjct: 458 LACQVLESNGSSSMASVCVGSLALLDAGVPLKAPAAGVAIGLITNSDASQYKLLTDILGI 517

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ED+ G MDFK+AGT +G+TAMQ+D+KI GIS  ++  A+ + + G  ++L+ M K     
Sbjct: 518 EDYAGDMDFKIAGTSNGLTAMQLDLKIAGISRQLLNEAISRGREGIAYVLSLMEKAQKAP 577

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R +  +  P  E ++IP  +   +   G   ++ I  +TG K++++DD  + + + + A 
Sbjct: 578 RAEFKDSVPITENVSIPIFRRHILFRSGAYNVKLIEAETGVKISLEDDANICLTAPNRAR 637

Query: 603 IEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTER 656
           +E A+EM+                +YK ++V++++ G  V    G R   +  S L   R
Sbjct: 638 LEEAKEMMERLFADESDIELNFGALYKAEIVEILESGVMVTLKKGMRPMFLKNSNLDARR 697

Query: 657 VAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           VA  S + ++ G  + V+ L  D   G  ++S K + Q+T  P+
Sbjct: 698 VAHASALGLEVGSMITVQYLGRDATTGHHRISRKTL-QSTTLPV 740


>gi|170586564|ref|XP_001898049.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
           malayi]
 gi|158594444|gb|EDP33028.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
           malayi]
          Length = 752

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/707 (34%), Positives = 383/707 (54%), Gaps = 30/707 (4%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLKDGQDFFPLTVNYQERTYAVGKIP 74
           ++ ETG IAR +DGAV+ + GET VLATVV    S  D  DF PLTV++Q+   AVG+IP
Sbjct: 45  IRFETGHIARLADGAVVVSQGETSVLATVVGRHSSASDTADFMPLTVDFQQSASAVGRIP 104

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
             YLRRE +  + +IL SRMIDRSIRPLF K Y  ETQ+I   +  D +  P ++ + AA
Sbjct: 105 MNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAA 164

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA--VLMVELE 191
           SAAL LS +P+EGP+   +V  IN + V+NP     +  S+DL ++G  +   +LM++++
Sbjct: 165 SAALTLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIAGCDNGKRILMIDMD 224

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS----KLEEEMSQM 247
             ++  +   + I  G      +I+AI+K+   C +      +++       L EEM  +
Sbjct: 225 GCEIEMENFSECIRIGLQAISHLIQAINKVKDSCGRPKRQNGNEEIDIDLIALTEEMHVL 284

Query: 248 IKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRT 305
             + L         +K  R + + +L  +++  F       +  ++   F ++  + +R 
Sbjct: 285 CGDQLYQILTNAKHDKLSRDQAVSELGDRLLEKFKER---SSPHKLRHTFRNLLKRSLRE 341

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            +   + R DGR    +R ++ ++ + +  HGS+LF RG TQ    VT          D+
Sbjct: 342 ALFKSEKRCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDA 401

Query: 366 LS----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           LS      Q+  FM+HY F   AT  +S     SRRE+GHG LA +A+  ++P    FPY
Sbjct: 402 LSQLLGAQQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIP--DDFPY 459

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDI 479
            LR+  ++ ES+GSSSMA+VC   LAL+DAGV I  P AGIAMGL+  ++ +D+ IL+DI
Sbjct: 460 CLRLACDVLESNGSSSMASVCAGCLALLDAGVQIKAPAAGIAMGLIINEERNDYRILTDI 519

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +G ED  G MDFK+AGT  G TAMQ+D+K+ GI+  ++  +L+QA+ G  H+L  M K  
Sbjct: 520 NGLEDFAGDMDFKIAGTVRGYTAMQLDLKVPGITPKLVTESLKQARNGLEHLLQLMKKAQ 579

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
             SR Q     P  E + +   +   +   GG   + I  +TGAK++I+DD  + I + +
Sbjct: 580 PVSRDQFKTTVPVHETIPVEIYKRHIIFRSGGYNAKLIESETGAKISIEDDTNISIFAPN 639

Query: 600 LAEIEAAREMIRSITDVPEVNKI-----YKGQVVKVMDFGAFVHFC-GARDGLVHISQLS 653
             ++E A+ M+  + +      +     YK ++  ++D G  V    G +  L+  S L 
Sbjct: 640 KVKLEEAKVMLNKMFENENEIDLVFGAMYKAEITDLLDHGVLVTLHKGMKPILLKNSNLD 699

Query: 654 TERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
              VA    +  K G  + ++ L  D   G  ++S K + Q+   P+
Sbjct: 700 VRNVAHAKVLGFKVGQKIIIQYLGRDPYTGYHRISRKTL-QSASLPV 745


>gi|75763848|ref|ZP_00743497.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488666|gb|EAO52233.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 525

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/506 (45%), Positives = 340/506 (67%), Gaps = 2/506 (0%)

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKLEEEMS 245
           MVE  A+Q+ E+ +L+AI+FGH+E K +I    ++ +   KE   +   +  + L + + 
Sbjct: 1   MVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVR 60

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN-EGEIVSVFEDIQAKVVR 304
           +M ++D+  +  + EK+ R   I+++KK+++ ++ +E +  +  G++  +   I  + VR
Sbjct: 61  EMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAEEADADTLGQVNEILYKIVKEEVR 120

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  +K+R DGR  + +R ++++VG+L RTHGS LF RG TQA  + TLG   D Q +D
Sbjct: 121 RLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQAXSICTLGALGDVQILD 180

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L   +   FM HYNF   + GE   M  P RREIGHG L  RA+ PV+P    FPYT+R
Sbjct: 181 GLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVR 240

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSE+ ES+GS+S A++CGS+LA+MDAGVP+  PVAGIAMGLVK G+ + ILSDI G ED
Sbjct: 241 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMED 300

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           HLG MDFKVAGT  G+TA+QMD+KI G+S  I+  ALQQAK GR+HILN M  V++E R 
Sbjct: 301 HLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRT 360

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +L  + P++ IM I PD+IR+VIG  GK I  I+E+TG K++I+ DGTV I+S +    +
Sbjct: 361 ELSAYAPKIIIMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQEMND 420

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+++I  I    +V +IY+G+V +V  FGAFV     +DGLVHIS+L+ ERV K  DVV
Sbjct: 421 KAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVV 480

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVV 690
           K GD + VK+++ D +G++ LS KV+
Sbjct: 481 KIGDVITVKVIEIDKQGRVNLSRKVL 506



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 16/206 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RPL  E G ++R + G+ L T G+T   + +    +L D Q    L V   +R    Y  
Sbjct: 139 RPLASEVGILSR-THGSGLFTRGQTQAXS-ICTLGALGDVQILDGLGVEESKRFMHHYNF 196

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G  R    P   EI    + +R++ P+    K +    +++  V++ +   S   
Sbjct: 197 PSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNG--STSQ 254

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPR----LDEDQGSLDLFVSGTQD 183
            S+  ++ A+M +G+P + PV G  +  +  G++         +++  G +D  V+GT  
Sbjct: 255 ASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILSDIQGMEDHLGDMDFKVAGTAQ 314

Query: 184 AVLMVELE--ANQLSEDVVLDAIIFG 207
            V  ++++   + LS +++ +A+   
Sbjct: 315 GVTALQMDIKIDGLSREILEEALQQA 340


>gi|208435109|ref|YP_002266775.1| polynucleotide phosphorylase [Helicobacter pylori G27]
 gi|257096696|sp|B5Z8L0|PNP_HELPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|208433038|gb|ACI27909.1| polynucleotide phosphorylase [Helicobacter pylori G27]
          Length = 688

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 244/699 (34%), Positives = 383/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR+ RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTFRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AAS AL L+ +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASVALFLAHIAPIKSVSACRIARIDDEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEVFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R     ++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFHEIAKKISEA----HSEFSLEEIEWSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D+ I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYTIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V++EGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLREGDSIRCRVISFN-KGKIALDL 687


>gi|308062494|gb|ADO04382.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Cuz20]
          Length = 688

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 244/699 (34%), Positives = 383/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCAEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASA L LS +     V   ++  I  ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASATLFLSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E  +L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPSMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  ++R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDRIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVEPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F ++GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISF-NKGKIALDL 687


>gi|238063392|ref|ZP_04608101.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
           39149]
 gi|237885203|gb|EEP74031.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
           39149]
          Length = 548

 Score =  547 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/532 (39%), Positives = 316/532 (59%), Gaps = 29/532 (5%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV 70
           +  R +   TGR+ARQ+ G+V+A  GETVVL+     +  K+  DFFPLTV+ +ER YA 
Sbjct: 20  FGTREITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAA 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+IPG + RRE RP+E+ IL  R+IDR +RP F K  +NE QV+  ++  D +    VV+
Sbjct: 80  GRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYDVVA 139

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT-----QDA 184
           + AAS +  LSGLPF GP+   ++ +++GQ+V  P  +E  + + D+ V+G        A
Sbjct: 140 INAASMSTKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELARATFDMVVAGRALADGDVA 199

Query: 185 VLMVELEANQ------------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE---- 228
           ++MVE EA +             +E+VV   +       + +  A S LA++ AK     
Sbjct: 200 IMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQSVLAEVAAKPVAEF 259

Query: 229 PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           P+ +D +  +   + ++ +++ ++  +  I  K  R   +D +K ++            E
Sbjct: 260 PVFLDYQPDAY--DAVAGLVRVEVAEALKIAGKADREGALDRIKARVAEELGGRFEG-RE 316

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E+ + F  +    VR  +L ++VR+DGR    +R +SA+VG+L R HGS+LF RG+TQ 
Sbjct: 317 KELSAAFRSLTKSEVRNRVLREQVRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQI 376

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           + V TL     EQ +D+LS  +   +M +YNF P +TGE  R+G+P RREIGHG LA RA
Sbjct: 377 LGVTTLNMLRMEQSLDTLSPEKSKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERA 436

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + PVLP   +FPY +R VSE   S+GS+SM +VC S+L L+ AGVP+  PVAGIAMGL+ 
Sbjct: 437 LIPVLPAREEFPYAIRQVSEALGSNGSTSMGSVCASTLGLLSAGVPLKAPVAGIAMGLIS 496

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           D  D    ++ L+DI G ED  G MDFKVAGT   +TA+Q+D K+ GI  ++
Sbjct: 497 DEVDGKTQYVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSDV 548



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 94/257 (36%), Gaps = 30/257 (11%)

Query: 314 MDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           +D     T R+I+   G L R   GS +   G+T  +   T G +  EQ+          
Sbjct: 15  IDNGSFGT-REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPKEQFDFFPLTVDVE 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           + M     +P +     R G PS   I   RL  R + P   +  +    +++V  I   
Sbjct: 74  ERMYAAGRIPGSF--FRREGRPSEDAILTCRLIDRPLRPSFVKGLRNE--VQVVETILAL 129

Query: 433 DG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           D      +  +  +S++   +G+P S P+    M  V    D   ++  + +E      D
Sbjct: 130 DPQHPYDVVAINAASMSTKLSGLPFSGPIGATRMAHV----DGQWVAFPTHEELARATFD 185

Query: 491 FKVAGT-----DSGITAMQMDMKIGGI----------SENIMV---MALQQAKRGRLHIL 532
             VAG      D  I  ++ +     +          +E ++     A + A R      
Sbjct: 186 MVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCRAQ 245

Query: 533 NEMSKVLSESRLQLGEF 549
           + +++V ++   +   F
Sbjct: 246 SVLAEVAAKPVAEFPVF 262


>gi|15612201|ref|NP_223854.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           J99]
 gi|81555135|sp|Q9ZK11|PNP_HELPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4155738|gb|AAD06718.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
          Length = 688

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/699 (34%), Positives = 382/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLNHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASA L L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASATLFLAHIAPIKSVSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK---DF 237
            M+E+ +     N L E ++L+A+       K       +       E +  + +     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEAFTPYQNELLFKEGEGIVLN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R     ++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFKEVAKKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR IS +  LL   H S LF RG TQ++VV  LG  
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +  D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSERQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAKR R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKRARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P+ EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PQTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVKIDLNTPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     ++KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDKCQV-----ILKEGDSIRCRVISFN-KGKIALDL 687


>gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis]
          Length = 852

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 244/721 (33%), Positives = 383/721 (53%), Gaps = 39/721 (5%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY---DRSLKDGQDFF 57
           M      E    G     ETG++AR ++G+ L   G T VLA         S ++ Q   
Sbjct: 117 MGQALRQEALVQGHTWAFETGKLARLANGSCLVQCGNTTVLAAATCQLPPWSRREAQS-L 175

Query: 58  PLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV 117
              V+Y+E+ YAVG+IPG Y +RE    E+E+L  R I R++RPLF K +  +  V  +V
Sbjct: 176 QFEVDYREKLYAVGRIPGTYNKREGTAKEHEVLAGRRIGRALRPLFPKGFALDAAVFASV 235

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGS-LD 175
           +  D    P V+++ +ASAAL+ S +P+ GPV  A+V  + +GQ V+ P +++ + + LD
Sbjct: 236 LSADGGCDPEVMAVSSASAALLCSDMPWAGPVAAARVAMLHDGQLVVGPSVEQQEAAVLD 295

Query: 176 LFVSGTQDA-VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-- 232
           L V+ T D  V M+E +  Q+ E   L+A+    +  + +I+   +LA+   ++      
Sbjct: 296 LLVAATADGRVTMLEADGEQVPETQFLNALHLAVSTTQQLIKPQMQLAEQTRRQTRPTQL 355

Query: 233 ---DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE- 288
              D     K+ E  + +++  LR       K  R   +   K  +++   +  S   E 
Sbjct: 356 SGADPAAAPKVAELATPLVEAILRDDKLT--KSTRTIALQQAKDSVLARLKANGSFRTEF 413

Query: 289 -----------GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
                       ++   F  + +  +R + +++  R DGR +  VR +  +V  +   HG
Sbjct: 414 ARVPGSGCVSPADLEHAFTAVLSSALRRLAVEEGWRCDGRGAIDVRPVHCEVDSVPVVHG 473

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDS-LSGTQRNDFMMHYNFLPCATGEVSRMGAPSR 396
           S+LF RG+TQ++  VT+G R+++Q ++S L G       ++Y+F P A GE S  G   R
Sbjct: 474 SALFSRGETQSLCTVTVGRRQEQQKMESLLGGEGVKRLFVNYSFPPFAVGETSTSGM--R 531

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           RE+GH  LA RA+ PV+P    FP++LR+ +E   S GSSSMA VCG +LAL DAGVP+ 
Sbjct: 532 REMGHSDLAERALLPVIPDMQAFPFSLRLNAETLASAGSSSMAAVCGGALALADAGVPLK 591

Query: 457 KPVAGIAMGLVKD---GDDFIILSDIS-GDEDHLGHMDFKVAGTDSGITAMQMDMK-IGG 511
             VAG+ +GL+ +   G +  +LS ++ G ED LG MD KVAGT  GITA Q+D+K  GG
Sbjct: 592 ALVAGVTVGLLTESSWGGELRLLSSVALGMEDQLGDMDLKVAGTSQGITACQLDVKLQGG 651

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +   I+  A+  A RGR  +L  M K L E R   G   P    + +P   +  VIG GG
Sbjct: 652 VPLEILNEAIGLAARGRAKLLGIMEKALPEKR---GASAPMFGSVKVPEAMMGRVIGSGG 708

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKV 630
             ++ + E+   +V++ DDG + + + S    +AA   I  +T    +   +Y+G V ++
Sbjct: 709 ANLKDMEERLDVRVDVGDDGVINVFAPSQNGYQAAEARILDLTGESVKEGAVYRGTVTRL 768

Query: 631 MDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           MDFGA V         L+HIS++S +RV    DV++ G  V V  +  D +G++KLS K 
Sbjct: 769 MDFGAMVELEPSGLRALLHISEVSAQRVRSIDDVLQIGQQVEVMCVGRDPKGQVKLSRKA 828

Query: 690 V 690
           V
Sbjct: 829 V 829


>gi|325186086|emb|CCA20587.1| polyribonucleotide nucleotidyltransferase putative [Albugo
           laibachii Nc14]
          Length = 826

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/696 (34%), Positives = 379/696 (54%), Gaps = 29/696 (4%)

Query: 17  KLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGG 76
               G  AR +DG V+ T G+ V+L T V     K G+DF PL V+Y+ + YA G IP  
Sbjct: 105 TYSIGEFARLADGGVMTTCGKCVILTTAVSQSGRKKGKDFLPLMVDYRVKYYASGIIPDT 164

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
             R+E   ++ EIL SR+IDR IRPLF K +  ETQ+I  V  +D ++   V+++ + SA
Sbjct: 165 ARRKEFAGSDEEILQSRVIDRVIRPLFPKGFLEETQIIATVHSYDPDNDSLVLAINSTSA 224

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQL 195
           AL  S +P++GPV   +V  ++GQ VLNP   + +  +L++  +G Q   +M+E E  Q+
Sbjct: 225 ALATSDIPWDGPVGCVRVVQVDGQLVLNPTESQKEAATLNILYAGNQKRTIMIEAEGEQI 284

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRV 254
            E  + +A+ F H+    V++A  +L K+  KE    DS    K L+E+  ++  +D   
Sbjct: 285 DEKRLSEALRFAHDGVADVLKAQRELIKLHGKEKRQYDSFTIDKTLKEQAKKIGLQDAVQ 344

Query: 255 SCFIPE--KYVRCKQIDDLKKKMVSYFSSEHSS--WNEGEIVSVFEDIQAKVVRTVMLDK 310
           +    +  K  R      +  K++S    +     +++        D     +R  ++++
Sbjct: 345 AIQNTKDTKKARQNAEKHVFGKIISVLRDQFKDRQYDDQLFTIAAHDTFELALRDQIMNQ 404

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY-----VDS 365
             R DGR    +R I+A+  +L   HGS++F RGDTQA+  VTLG+ +         +D 
Sbjct: 405 -RRFDGRPLAQIRQINARTSILPMAHGSAVFSRGDTQALCSVTLGSLDQGLRLRSATIDP 463

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
              ++    ++HY F P    E  R+G  +RR +GHG LA +AI P+LP   +FPYT+R+
Sbjct: 464 SDESEYKHAILHYEFPPYCVNETGRLGGINRRMVGHGALAEKAILPILPSIEEFPYTIRM 523

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-------DDFIILSD 478
            SEIT SDGSSSMAT+CG SLAL+DAGVPI  P+AGI++GLV +          + +++D
Sbjct: 524 TSEITGSDGSSSMATICGVSLALLDAGVPIEAPIAGISVGLVSEPRESSSRFGKYRLVTD 583

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G EDH G MDFKVAGT  GITA+Q+D+KI G+  +++  ++++A+  R  IL+ M + 
Sbjct: 584 ILGSEDHYGDMDFKVAGTRKGITALQLDVKIPGVPPSVLFESIEKAREARYQILDSMDQT 643

Query: 539 LSESRLQLGEFTPR------VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           L++ R  L     +      +E+  IP   IR +IG  G  IR + + TG  ++ID    
Sbjct: 644 LAKPRDTLKNSASQTGEANIMEVFKIPSTSIRYLIGKAGSNIRSMEKSTGCTISIDRYDG 703

Query: 593 VKIASSSLAEIEAAREMIRSITDVP--EVNKIYKGQVVKVMDFGAFVHF--CGARDGLVH 648
               +     +E A+ +I   TD    ++   Y  +V ++MDFGA +     G     +H
Sbjct: 704 TVRVTGPPGLVENAKNLIVEFTDGTFFKIGDTYTMKVAELMDFGASLESTRPGKHRAFIH 763

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           IS+LS ++       +K GD +    ++    GK+ 
Sbjct: 764 ISELSLQQSQDIRQHLKIGDEIKAVCIEAGISGKMS 799


>gi|298708135|emb|CBJ30476.1| Polyribonucleotide nucleotidyltransferase [Ectocarpus siliculosus]
          Length = 763

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/711 (34%), Positives = 376/711 (52%), Gaps = 41/711 (5%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +  ETG+IA+ +DG V A  G TVV+ + V +R+  D   F PL+V+Y+E+ +A+GKIP 
Sbjct: 19  ITFETGKIAQLADGFVTARQGGTVVMVSAVSNRAEMDDSGFLPLSVDYREKAHALGKIPR 78

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
              RR+ R T+ E+L++R +DR +RPLF   Y  +TQV+  V   +    P VV++ AAS
Sbjct: 79  TPNRRDGRETDEEVLVARAVDRVLRPLFPPGYCFDTQVVATVQALEAGGDPVVVAINAAS 138

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-------EDQGSLDLFVSGTQDAVLMV 188
           AAL +S +P++GP    ++  ++G+ V+NP  D        D G  DL  +  +  VLM+
Sbjct: 139 AALCVSNIPWDGPAGCVRIGRVDGKLVVNPSPDTFSPTAWNDGGGFDLLYAANEHRVLMI 198

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-------------- 234
           E+      E ++  A+   H    P+IEA   L +   KE ++  S              
Sbjct: 199 EMGGGPTGERLMDSALKLAHKHVAPLIEAQRALQRDAGKEKVLPRSDAAPSPGMLTEAMR 258

Query: 235 ---KDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEI 291
               D   L     +   +        P K  R +    L  ++    ++          
Sbjct: 259 VGLPDAKALFAAPPKGGDDATAGESGNPSKADRGRAEGALLGRVRKALATSFPDAPPAAR 318

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           V+  E +  + +R  ++++  R DGR  +  RD++ +V +L   HGS +F RG TQ + +
Sbjct: 319 VAAAEAVLKRAMRAAIVEEGRRPDGRGKDEARDLTGEVDVLPTVHGSGMFTRGQTQTLAI 378

Query: 352 VTLGTREDEQYVDSLSGTQR------NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           VTLG   +      L   Q           +HY F P    E  R+G  +RR +GHG LA
Sbjct: 379 VTLGPALESAPQRFLGKAQEASDTLDARLYLHYEFPPYCVNETGRVGLVNRRMVGHGNLA 438

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            RA+  V+P+T  FPYT R+ +E+T S+GSSSMAT C +SLALMDAGVP+S PV GI++G
Sbjct: 439 ERAVLSVMPETETFPYTTRVSAEVTMSNGSSSMATACATSLALMDAGVPVSSPVGGISVG 498

Query: 466 LV--------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI-GGISENI 516
           L+        +D     IL DI G EDH G MDFKVAGT +GITA+Q+D+K+ GG+   +
Sbjct: 499 LMTTDAPADGEDIGPHSILMDIQGTEDHYGDMDFKVAGTATGITAIQLDVKLRGGVPLPV 558

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL+ AK GR  +L  M K +      L +  PR EI+    D+ ++++G  G+ ++G
Sbjct: 559 LSEALRVAKAGRAQVLKAMKKAIGSPNGTLKDRAPRCEIVHFEADRKKDLVGFQGQTMKG 618

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I E  G  +++  +G   + S +   +  A  ++R +    E    Y+G V  V ++G  
Sbjct: 619 IEENFGVALDLSTEGRAVVFSDNAQSVAGAVRLVRELVHEIEEGDFYEGTVTTVHEYGCL 678

Query: 637 VHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V     + GL+H+S ++ +  A    D+VK GDTV V++++ D  RG IKL
Sbjct: 679 VELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVGVRVMEVDRLRGLIKL 729


>gi|224438200|ref|ZP_03659135.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
 gi|313144645|ref|ZP_07806838.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
 gi|313129676|gb|EFR47293.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
          Length = 704

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 250/712 (35%), Positives = 393/712 (55%), Gaps = 37/712 (5%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  ++I+            +A+ ++G+VL   G +V+LA+V  + + K   DF PL+V Y
Sbjct: 1   MQRIDIQNENLNESYTFNYMAKAANGSVLYQNGGSVLLASVCAEENNKYDDDFLPLSVQY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+ YA  K P G+++RE +P+E EIL SR+IDR++RPLF K YK+ T ++I V+ +D +
Sbjct: 61  IEKAYASNKFPPGFVKREGKPSEFEILTSRLIDRTLRPLFPKGYKHITSIVIWVLSYDGK 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEG----PVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
           S   + ++ AASAAL +S LP E      V G ++   NG +VLNP +++  +  LDLFV
Sbjct: 121 SDLQLNALNAASAALYVSNLPLESLKDNAVCGVRIGRKNGAFVLNPTMEQMSESELDLFV 180

Query: 179 SGTQDAVLMVEL-------EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           SG  D +LM+E+        AN+LSE  ++ A+    +      ++  K      K+ + 
Sbjct: 181 SGRGDELLMIEMKSIRSEKGANELSERDMILALESAKSYIDRATQSYHKYFAPYKKQSLA 240

Query: 232 ID---SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE 288
           ID       + L E++++     +  +     K     Q+  + K+ +     E      
Sbjct: 241 IDLSQDSLNTDLLEKIAKNYHSQILEAITFLAKSESQMQLHSIIKQAMRECGIEEEKIAT 300

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
             I +     + K+VR ++++  +R DGR  + +R IS +  +L   HGS LF RG TQA
Sbjct: 301 EHIKAY----KKKLVREMIIESAIRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQA 356

Query: 349 IVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           +V  TLG+  D Q  + L      +  F+ HYNF   + GE S +G+  RRE+GHG LAR
Sbjct: 357 LVSATLGSENDAQSYEMLGSKNALKRRFLFHYNFPGFSVGEASMIGSVGRRELGHGNLAR 416

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           RA+   L        T+R+VSEI ES+GSSSMA+VCG SLAL   GV +   +AG+AMGL
Sbjct: 417 RALESSLTSQD---RTIRLVSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGL 473

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           V  G+ + IL+DISG EDH G MDFKVAG   GI+AMQMD+K+GGIS+ I+  +L QAK 
Sbjct: 474 VTQGEKYAILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGISKEILEESLLQAKE 533

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            R  IL  M +  ++  L      P+ E   I P +I  VIG GG+VI+ I+E+    ++
Sbjct: 534 AREQILGIMEEARAKIVLN-HSILPKSESFKIAPHKIVEVIGQGGRVIKDIIERFEVSID 592

Query: 587 ID-DDGTVKIASSSLAEIEAAREM----------IRSITDVPEVNKIYKGQVVKVMDFGA 635
           ++ + G V +++S+   +  A+             R   +   V + + G++ K+ DFG 
Sbjct: 593 LERESGIVNVSASNEDNLAKAKAFILEIVSGAKSDRVDWESYHVGERFVGKIKKIADFGV 652

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           FV      DGL+HIS++  ++      V++    +  ++L  + +GK++L +
Sbjct: 653 FVELPRGGDGLLHISKIIKDKNESIHSVLQGKSELECEILSRN-KGKVELGL 703


>gi|83318937|emb|CAJ38806.1| polynucleotide phosphorylase protein [Platynereis dumerilii]
          Length = 628

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 210/627 (33%), Positives = 343/627 (54%), Gaps = 24/627 (3%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L L TG+ AR +DG++   +G T VL T V     K   +F PL V+Y+++  A G+IP 
Sbjct: 2   LTLNTGQSARFADGSITGKFGNTSVLVTAVS--KGKSTNNFLPLMVDYRQKAAAAGRIPT 59

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            +LRRE  P++ E L SRMIDRS+RPLF   Y  +TQ++ N++  D ++ P +VS+ AAS
Sbjct: 60  NHLRRELGPSDKETLTSRMIDRSLRPLFPSGYFVDTQIVCNLLAVDGQNDPDIVSINAAS 119

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFV-SGTQDAVLMVELEAN 193
           AAL +S +P  GPV   +V +++ + V+NP   E    + DL V +  Q+ V+M+E  A+
Sbjct: 120 AALAVSDIPRFGPVGAVRVGFVDNEIVINPTRREMAHSTXDLVVSAADQNKVVMLEASAD 179

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DFSKLEEEMSQMIKED 251
            +S+     AI  G  E + +I AI  LAK+  KE   +        ++ E +  +    
Sbjct: 180 GISQPNFRHAIKRGVKESQKIITAIKDLAKIYGKEKRRLVQAVDVPEEIAESVKSLAALR 239

Query: 252 LRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLD 309
           +R   S  +  K  R   ++ +++++V      +   +       F ++   + R ++ +
Sbjct: 240 IREIFSDSLHHKISRDMAVNSVREEVVRKLIESNPEVDPSIFQEAFSNLSRSIFRDLIFE 299

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS-- 367
             +R DGR    +R I+  V L    HGS++F RG TQ +  VT  + +    VD+++  
Sbjct: 300 YDLRCDGRRLNEIRPINCGVDLFSPLHGSAMFQRGQTQVLCTVTFDSLDSAAKVDAITAL 359

Query: 368 --GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
             G +  +F +HY F P AT E  R G   RRE+GHG LA +A+  V+P    FP+T+R+
Sbjct: 360 MAGMKEKNFFVHYEFPPYATNETGRTGFAGRRELGHGALAEKALKNVIPS--DFPFTIRL 417

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVA---GIAMGLVK-------DGDDFII 475
            +E+ ES+GSSSMATVCG SLALMDAG    +P     G+A G          +  DF +
Sbjct: 418 SAEVLESNGSSSMATVCGGSLALMDAGSSKLRPKGSSLGVACGKWLTRSDDHGNVSDFKV 477

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           L+D+ G ED++G MDFK AGT  G+TA+Q D+K+ G+   +++ A ++A  G+  IL+ M
Sbjct: 478 LTDLLGIEDYMGDMDFKYAGTSKGVTALQADVKVPGLPLKVIMEAEERAWEGKTEILSIM 537

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
              LS+ R      +P  + + +P  +    +G+GG  +R ++ +TG  +   D+   K+
Sbjct: 538 WNCLSQHRQAKKNNSPVTQDLQVPVTKRSRFVGLGGYNLRKLMAETGVSITPIDETNFKV 597

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKI 622
            + + + ++ A E I  +    +  ++
Sbjct: 598 FAPNQSAMDEASEKIDELLKDEKEPEL 624


>gi|317014601|gb|ADU82037.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Gambia94/24]
          Length = 688

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/696 (35%), Positives = 387/696 (55%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCTEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVGACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+       K       +       E +  +S+  +  
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEAFTPYQNELLFKESEGIALN 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  +  +         E     ++ +++ K++    S  HS ++  EI    E ++ 
Sbjct: 243 ERLLDLLTNQYFDEIIKGIESSALSER-ENVFKEVARKISEAHSEFSLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR IS +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAKR R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQAKRARKHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
             +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++          
Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVERFEVKIDLNKPSGEVKIMG 597

Query: 599 SLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLDQELERYTIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQN 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +V     ++KEGD++  +++ F ++GKI L +
Sbjct: 658 MDRCQV-----ILKEGDSIRCRVISF-NKGKIALDL 687


>gi|332674015|gb|AEE70832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 83]
          Length = 688

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/699 (35%), Positives = 387/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCTEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMMEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  + GLL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDRAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|261838537|gb|ACX98303.1| polynucleotide phosphorylase [Helicobacter pylori 51]
          Length = 688

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/699 (35%), Positives = 387/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFLINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  + GLL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDTEGDMDFKIAGNLEGITAMQMDTKMSGIPLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PATEIFNVVPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 RQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|317178490|dbj|BAJ56278.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F30]
          Length = 688

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/696 (35%), Positives = 385/696 (55%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCTEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++V+NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFVINPNASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIVFN 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  +  +         E     ++ +++  ++    S  HS ++  EI    E ++ 
Sbjct: 243 ERLLDLLKNQYFGEIIKGIESSALSER-ENVFNEIARKISEAHSEFSLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
             +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++          
Sbjct: 539 KEKIVINFSHL-PATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMG 597

Query: 599 SLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRRQN 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 658 MDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|297380394|gb|ADI35281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           v225d]
          Length = 688

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/699 (35%), Positives = 384/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I  ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +      +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKERIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|307637887|gb|ADN80337.1| Poly ribonucleotide nucleotidyl transferase [Helicobacter pylori
           908]
 gi|325996485|gb|ADZ51890.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           2018]
          Length = 688

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 245/696 (35%), Positives = 386/696 (55%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+       K       +       E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEAFTPYQNELLFKESQGIIFN 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  +  +         E     ++ +++ K++    S  HS ++  EI    E ++ 
Sbjct: 243 ERLLDLLTNQYFDEIIKGIESSALSER-ENVFKEVARKISEAHSEFSLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR IS +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAKR R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQAKRAREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
             +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++          
Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMG 597

Query: 599 SLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKECVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQN 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +V     ++KEGD++  +++ F+ +GKI L +
Sbjct: 658 MDRCQV-----ILKEGDSIRCRVISFN-KGKIALDL 687


>gi|308063994|gb|ADO05881.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Sat464]
          Length = 688

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/699 (34%), Positives = 385/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I  ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +++     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKENQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  ++R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDRIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KDQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIKCRVISFN-KGKIALDL 687


>gi|210135372|ref|YP_002301811.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           P12]
 gi|257096695|sp|B6JN53|PNP_HELP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|210133340|gb|ACJ08331.1| polynucleotide phosphorylase [Helicobacter pylori P12]
          Length = 688

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/699 (35%), Positives = 387/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK---DF 237
            M+E+ +     N L E ++L+A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCTLYEEVFTPHQNELLFKESQAIVLN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + ++    +++           R    +++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLTNQYFDEIIKGIESSALSERENVFNEIAKKISEA----HSEFSLEEIEWSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKEAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIKCRVISFN-KGKIALDL 687


>gi|303286903|ref|XP_003062741.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456258|gb|EEH53560.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 846

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/714 (32%), Positives = 359/714 (50%), Gaps = 49/714 (6%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           +  ETGR+AR +DGAV+A+ G+  V+   V  R       FFPL V Y+ER  A GKIP 
Sbjct: 88  IAFETGRLARLADGAVMASMGDNRVMCAAVAAREPDPNAGFFPLNVEYRERASAYGKIPS 147

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
            + RRE  P + E+L  R++DR+IRPLF K ++N+T V   V+  D    P V+++  AS
Sbjct: 148 TFTRREGAPKDREVLAMRVVDRAIRPLFPKAFRNDTSVQAIVLASDRSLDPSVLAVNGAS 207

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVL--NPR-LDEDQGSLDLFVSGTQDAVLMVELEA 192
           AAL  S +P+ GPV   +V  +N   V+  NP      +   +L  +GT+D  LM+E  A
Sbjct: 208 AALHASSIPWNGPVGAVRVAVVNDGEVIVTNPDDATRAESEFELLYAGTEDRALMIEASA 267

Query: 193 NQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249
            +   + E VV  A+   H+  K +I    +L +   KE   +  +  +           
Sbjct: 268 TKRGGVPEAVVAKALRAAHDAAKLLIAPQRRLRERVGKEKRPLPEEADATAAAAAKLKAL 327

Query: 250 EDLRVS----CFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVVR 304
              R++      I  K  R + + +LK ++    ++ H        + + +    ++ +R
Sbjct: 328 AVPRLTRLYELKIQSKSERGRMMAELKAEIAEELATSHGMELTPQALDAAYLAASSRAMR 387

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +K VR+DGR    +R ++A+VG +   HGSS+F RG+TQA+  VT+G+ +D Q +D
Sbjct: 388 DLVFEKGVRVDGRKLTELRSLAAEVGAIPVVHGSSVFERGNTQALATVTIGSVDDFQRLD 447

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +  G +   FM+HY F   +  E  R G  SRREIGHG LA +++  ++P    +P+ +R
Sbjct: 448 APVGPKNKKFMLHYAFPSFSINETPRRGGLSRREIGHGALAEKSLAGMIPDDDAYPFAVR 507

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSD 478
           + +E  ES+GSSSMA VC  SLALMDAGVPI++ V  I++GLV D D+        +LSD
Sbjct: 508 VNAETLESNGSSSMAAVCAGSLALMDAGVPIAEHVGAISVGLVMDEDEDGNVTRHALLSD 567

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I G ED LG MDFK+AGT  GIT +Q  +                A   R  +++EM   
Sbjct: 568 IMGLEDVLGDMDFKIAGTRGGITGIQAPLDE--------------ASVARNQVIDEMYAA 613

Query: 539 LSESRL--QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG----- 591
           ++  R   ++  FTPR   + +    +  +IG  G  I+ I   T AK++I         
Sbjct: 614 IARPREADEMSAFTPRYATLEMDQKFVGKLIGPQGSTIKNIEATTSAKISIRQAEPAAGE 673

Query: 592 ---TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
               V I + S   +  A E +  +T   E    Y   V+    FG  V      +GL+H
Sbjct: 674 LAARVGIFAPSKDALALAVEQVELLTKEVEKGATYGATVIDTKPFGWIVRAPTGCEGLLH 733

Query: 649 ISQLSTE----RVAKTSDVVKEGDTVWVKLLDFDD--RGKI--KLSMKVVDQNT 694
           +++ S +      ++   ++  G  V VK +D      GK     S+K +    
Sbjct: 734 VTEYSWDGGFISESEVESLMPVGTEVEVKCVDVKPGRNGKTERSFSVKQLTPPP 787


>gi|317182464|dbj|BAJ60248.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F57]
          Length = 688

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 384/696 (55%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCTEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I  ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIVFN 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  +  +         E     ++ +++  ++    S  HS ++  EI    E ++ 
Sbjct: 243 ERLLDLLKNQYFGEIIKGIESSALSER-ENVFNEIARKISEAHSEFSLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHESLEHKVPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
             +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++          
Sbjct: 539 KEKIVINFSHL-PATEIFNVTPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMG 597

Query: 599 SLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRRQN 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 658 MDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|308183320|ref|YP_003927447.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           PeCan4]
 gi|308065505|gb|ADO07397.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           PeCan4]
          Length = 688

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/699 (35%), Positives = 389/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIAKMDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+       K       +       E +  +S+  + L
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLEALELAQKSLKETCTLYEEAFTPYQNELLFKESEGIA-L 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDD---LKKKMVSYFSSEHSSWNEGEIVSVFED 297
            E +  ++K           K +    + +   + K++    S  HS ++  EI    E 
Sbjct: 242 NERLLDLLKNQYFDEII---KGIESSALSERENVFKEVARKISEAHSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR IS +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAKR R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIQLEVLYQALLQAKRARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVFKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F ++GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISF-NKGKIALDL 687


>gi|188528001|ref|YP_001910688.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Shi470]
 gi|257096697|sp|B2UUX6|PNP_HELPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188144241|gb|ACD48658.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Shi470]
          Length = 688

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/699 (35%), Positives = 386/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R    G+DF PL V + E+
Sbjct: 4   ITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-GEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDVENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I  ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLKEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRCMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   +AG+AMG+V +G D  I
Sbjct: 419 KDQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLIAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F ++GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIKCRVISF-NKGKIALDL 687


>gi|317009891|gb|ADU80471.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           India7]
          Length = 688

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/699 (35%), Positives = 385/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCAEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  I  ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLARIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEVFTPHQNELLFKESQGIVFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEA----HSEFSLEEIGLSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  + GLL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKEARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVFKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|325998073|gb|ADZ50281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           2017]
          Length = 688

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/696 (35%), Positives = 386/696 (55%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    R  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+       K       +       E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEAFTPYQNELLFKESQGIIFN 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  +  +         E     ++ +++ K++    S  HS ++  EI    E ++ 
Sbjct: 243 ERLLDLLTNQYFDEIIKGIESSALSER-ENVFKEVARKISEAHSEFSLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR IS +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  ++L      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAKR R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNVEGITAMQMDTKMSGIRLEVLYQALLQAKRAREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
             +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++          
Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMG 597

Query: 599 SLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKECVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQN 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +V     ++KEGD++  +++ F+ +GK+ L +
Sbjct: 658 MDRCQV-----ILKEGDSIRCRVISFN-KGKLALDL 687


>gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
 gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
          Length = 725

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 259/715 (36%), Positives = 397/715 (55%), Gaps = 55/715 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V+I+  G+  K    ++ARQ+D ++    G TV+LAT+ Y+      +DF PL V Y ER
Sbjct: 5   VDIKINGKEQKFILNKVARQADSSIWWQEGNTVMLATLTYNPDEVIEEDFVPLVVQYVER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIP G+++RE +P + E L +R++DRS+RPLF K +  +T + I  +  D +S  
Sbjct: 65  AYAVGKIPAGFVKREQKPGDFETLTARIVDRSLRPLFPKNFGYDTIITIMALSADEDSDL 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V +M AA+A + +S LPF   V G ++  I+G+ + NP L + ++G  +LFV+GT+D +
Sbjct: 125 QVAAMNAAAACMYMSSLPFAKMVHGVRITRIDGEIIFNPTLSQLEKGDFNLFVTGTKDEL 184

Query: 186 LMVELEA------------------------------NQLSEDVVLDAIIFGHNECKPVI 215
           LM+E  +                              N++SED +++ +     + K   
Sbjct: 185 LMIEYASQGQEEVEIIPVEDIMLDGVPVENTIIKYKTNEISEDELIEILKKAQEKIKEGA 244

Query: 216 EAISKLAKMCAKEPIVIDSK---DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           E      K   KE I    +   D +   + + +   ++LR       K  R   + +  
Sbjct: 245 ETYESALKNFVKEKIEFVERKEVDLTPYIKLIKEKYIDELREIIKHLSKSERDYLLKEFA 304

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
           +K+    + E    N   I+   ++++ ++VR ++L + +R DGR  + +R IS +  +L
Sbjct: 305 RKIAKTLNEED---NFEAILKAVKEVKREIVRGMILYEGIRADGRKLDEIRPISIETNVL 361

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN--DFMMHYNFLPCATGEVSR 390
            R HGS LF RG TQA+ V T G   D Q   +L+  +     FM+HYNF   A GE  R
Sbjct: 362 PRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEEKLEKFMLHYNFPAFAVGEAVR 421

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           +G PSRRE+GHG LA+RAI P+L     F  T+R+VSEI ES+GSSSMAT+C SS+AL  
Sbjct: 422 LGPPSRRELGHGNLAKRAIEPLLDPE--FDETVRVVSEILESNGSSSMATICASSIALKA 479

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           A VP+ K  AGIAMGLV +G+ + IL+DI G EDH G MDFKVAGT  GITAMQMD+K+G
Sbjct: 480 AKVPLLKLAAGIAMGLVSEGEKYAILTDIMGLEDHDGDMDFKVAGTWDGITAMQMDIKLG 539

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+ +I+  AL QA+  R  IL +M   +   +    +  P+     + PD+I ++IG  
Sbjct: 540 GIALDILKEALYQAREARAFILEKMENAVENIKYN-EDVLPKSLSFKVEPDRIIDIIGTA 598

Query: 571 GKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS--------ITDVPEVNK 621
           GK ++ I+ + G  +++D + G VKI   S  +++AA++ I +             E+  
Sbjct: 599 GKTVKEIIAKFGITIDLDRETGKVKIFGDSHEQMQAAKDYILNVICKEDTPKIPEFEIGS 658

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           I +G + + + FG FV      +GL+HIS+L      K+ D  + GD + VK+L 
Sbjct: 659 ILEGVIKRKVPFGLFVELAPDVEGLLHISKL----NGKSLDDFEIGDKIKVKVLS 709


>gi|317177956|dbj|BAJ55745.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F16]
          Length = 688

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 245/699 (35%), Positives = 384/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ +  + HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMALSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PATEIFNVAPDKIVEIIGQGGHVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 RQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|217034082|ref|ZP_03439503.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
 gi|216943477|gb|EEC22931.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
          Length = 688

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/696 (35%), Positives = 384/696 (55%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKAEEFALKQVAKQATSSLMYRLGKTIILASVCTEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMHSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  +  +         E     ++ +++  ++    S  HS ++  EI    E ++ 
Sbjct: 243 ERLLDLLKNQYFGEIIKGIESSALSER-ENVFNEIAGKISEAHSEFSLEEIELSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR I  + GLL   H S LF RG TQ++VV  LG   D 
Sbjct: 302 TEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGADNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
             +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++          
Sbjct: 539 KEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMG 597

Query: 599 SLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +   +   +E I +             ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLNQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRRQN 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +V     V+KEGD++  +++ F ++GKI L +
Sbjct: 658 MDRCQV-----VLKEGDSIRCRVISF-NKGKIALDL 687


>gi|254779759|ref|YP_003057865.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           B38]
 gi|254001671|emb|CAX29876.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Helicobacter pylori B38]
          Length = 688

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/699 (35%), Positives = 387/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCIEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L A+       K       ++      E +  +S+  + L
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESEGIA-L 241

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDD---LKKKMVSYFSSEHSSWNEGEIVSVFED 297
            E +  ++K           K +    + +   + K++    S  HS ++  EI    E 
Sbjct: 242 NERLLDLLKNQYFDEII---KGIESSALSERENVFKEVARKISEAHSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +VA     +KEGD++  +++ F ++GKI L +
Sbjct: 655 KQNMDRCQVA-----LKEGDSIKCRVISF-NKGKIALDL 687


>gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
          Length = 729

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/693 (36%), Positives = 371/693 (53%), Gaps = 50/693 (7%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
                +EI   G       G++ARQ+DG+VL   G+T++LATVV          F PLTV
Sbjct: 1   MQEKIIEITSNGLQESFTLGKVARQTDGSVLYRQGKTMILATVVSSDKAVHEP-FLPLTV 59

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y E+ YA  KIPGG+++RES+P++ E L SR+IDRS+RPLF + +   T + + V+  D
Sbjct: 60  QYIEKAYAAAKIPGGFVKRESKPSDFETLTSRIIDRSLRPLFPEDFAYPTVITVLVLSAD 119

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDLFVSG 180
            E    V ++ AA+AAL++S LP E  V   ++  I+G+  LNP L   ++ +LDL + G
Sbjct: 120 SEVDLQVAALHAANAALLVSDLPVERSVAAVRLGKIDGERRLNPPLSRMEESALDLLLVG 179

Query: 181 TQDAVLMVELEA------------------------------NQLSEDVVLDAIIFGHNE 210
           + + +LM+E+ A                              N+L E+ ++  I     E
Sbjct: 180 SGEELLMIEMAAKATEVIEVEEIPEPELLMGPMPVLLPHQESNELPEEELIALIGEARGE 239

Query: 211 CKPVI----EAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCK 266
                    EA+        + P VID  +   L   + +   + +  +     K  R  
Sbjct: 240 IAEACRRYEEALRPFKAEIREFPPVIDRAELEDLTALVREQFSDRIASALAGLSKSERAD 299

Query: 267 QIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDIS 326
            ID++ +++ +Y            +    E ++ +++R  +L++ VR DGR  + VR IS
Sbjct: 300 IIDEVVQEVEAYLVEHGIHREPLVVYRAIEAVKREMLRRQILEEGVRPDGRKPDEVRPIS 359

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG--TQRNDFMMHYNFLPCA 384
            +  LL   HGS LF RG+TQA+  VTLG  ++ Q  + L+    +   FM+HYNF P  
Sbjct: 360 IETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSPRTERFMVHYNFPPFC 419

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
            GE   +GAPSRRE+GHG LA+RA+ PV+ +      T+R+VSEI ES+GSSSMATVC  
Sbjct: 420 VGEARPIGAPSRRELGHGNLAKRALEPVIDRELS--RTIRLVSEILESNGSSSMATVCAG 477

Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
           SLAL+ A   IS  VAG+AMGLVK+GD   +L+DI G EDH G MDFKVAGT  GITAMQ
Sbjct: 478 SLALVSAEAEISALVAGVAMGLVKEGDRHRVLTDIMGLEDHDGDMDFKVAGTRKGITAMQ 537

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           +D+K+GG+   I+  AL QAK+ R HIL+ M +             P  E   I P +I 
Sbjct: 538 LDIKLGGLDLEILSEALTQAKKARFHILDLMEEAQKSIVP--SAALPVAEHFHIDPSKIV 595

Query: 565 NVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAARE-------MIRSITDV 616
           +VIG  G  IR I+E+   K+++D + G VK+  +   +++AARE               
Sbjct: 596 HVIGKAGSTIREIIEKFEVKIDMDREKGKVKVTGADREKVKAAREHIEGIASREEPKVPK 655

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            EV   Y+G V ++ D+G FV   GA      I
Sbjct: 656 YEVGATYQGTVKRIADYGLFVELPGADTMRCSI 688


>gi|145343510|ref|XP_001416364.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576589|gb|ABO94657.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 679

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/660 (35%), Positives = 363/660 (55%), Gaps = 23/660 (3%)

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V+Y+ER+YA GKIP  + RRE  P E EIL  R+IDR+ RPLF K +  E  +   VM 
Sbjct: 1   MVDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQCVVMA 60

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFV 178
            D    P V+++  ASAAL  S +P+ GP+   +V  +N   +++P  +  + S   LF 
Sbjct: 61  SDGVEDPAVLAVNGASAALTASSIPWNGPIGAVRVAVVNKAIIVSPSDEVVESSDFTLFY 120

Query: 179 SGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
           +G +   LM+E ++N+   L E +V DA+   H   + +I     LA    K    + + 
Sbjct: 121 AGNEARALMIEAQSNKSGGLEETLVADALRKAHEAVRELIPPQIALANEIGKPKQELAAA 180

Query: 236 DF-SKLEEEMSQMIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSW------ 286
              ++++     + K  L       I +K+ R +++ +L+ ++V      H  W      
Sbjct: 181 PVTAEMKRACYDVAKARLVALYEEHIQDKHERGRKMAELQSEVVRELMDSHPEWMESGEV 240

Query: 287 NEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDT 346
           +E  + S +  +  +V+R  +LD+ VR+DGR    +R++    G +   HGS+LF RG+T
Sbjct: 241 SEAMLGSAYFAVCGRVLRERVLDEGVRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNT 300

Query: 347 QAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
           QA+  VTLG+ ED Q +D+L+G      M+HY+F   +  E    G  SRRE+GHG LA 
Sbjct: 301 QALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGARGL-SRREVGHGALAE 359

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +++  V P    FP+ +R+ +E  ES+GSSSMA VC  S+ALMDAGVP+++ V  I++GL
Sbjct: 360 KSLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGL 419

Query: 467 VKDGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           V D D+       + ++ DI G ED LG MDFK+AGT SG+T +Q+D K  GI  +I++ 
Sbjct: 420 VMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGIQLDCKPAGIPLDILIE 479

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           AL +A   R  +++ M + +SE +  + +  PR     +PP  I  +IG  G  I+ + +
Sbjct: 480 ALDRASAARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLIGPQGSNIKALEK 539

Query: 580 QTGAKVN-IDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFV 637
           +TGAKV+ ++DDG + +   + A  +AA   I +    + EV K Y   V +V+ FG  +
Sbjct: 540 ETGAKVSVVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYATTVKEVLPFGCVL 599

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
                 DGL+H+S+++ E     SDV   GD V VK +  D RG IK S K +      P
Sbjct: 600 TTASGDDGLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKWSRKALLPRPRPP 659



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 82/218 (37%), Gaps = 27/218 (12%)

Query: 28  DGAVLATYGETVVLATVV-YDRSLKDGQDFFP------LTVNYQERTYAVGKIPGGYLRR 80
            G+ L   G T  LATV           D         L ++Y   +++V +        
Sbjct: 290 HGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGAR---- 345

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
               +  E+    + ++S+  +F         V +N    +   S  + ++ + S ALM 
Sbjct: 346 --GLSRREVGHGALAEKSLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMD 403

Query: 141 SGLPFEGPVVGAQVDYINGQ---------YVLNPR---LDEDQGSLDLFVSGTQDAVLMV 188
           +G+P    V    +  +  +         Y L      L++  G +D  ++GT+  V  +
Sbjct: 404 AGVPLTEHVGAISIGLVMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGI 463

Query: 189 ELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +L+     +  D++++A+       + VI+ + +    
Sbjct: 464 QLDCKPAGIPLDILIEALDRASAARQKVIDVMERAVSE 501


>gi|317180940|dbj|BAJ58726.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F32]
          Length = 688

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/699 (35%), Positives = 386/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITITSSNKTEEFALKQVAKQAISSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQRSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|298735771|ref|YP_003728296.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
 gi|298354960|emb|CBI65832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
          Length = 688

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 244/699 (34%), Positives = 383/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       +       E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEAFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R     ++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKKISEA----HSEFSLEEIEWSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKEHVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|315587104|gb|ADU41485.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 35A]
          Length = 688

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/699 (35%), Positives = 384/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCTEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIEWSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +  D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEEQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  +  D+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PATEIFNVTSDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 RQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|261839934|gb|ACX99699.1| polynucleotide phosphorylase [Helicobacter pylori 52]
          Length = 688

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 244/699 (34%), Positives = 386/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP  +   Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPSANLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGIVFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEA----HSEFSLKEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G +  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQNHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
                +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++       
Sbjct: 536 HGAKEKIVINFSHL-PATEIFNVVPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|32266093|ref|NP_860125.1| polynucleotide phosphorylase/polyadenylase [Helicobacter hepaticus
           ATCC 51449]
 gi|81666186|sp|Q7VIL0|PNP_HELHP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|32262142|gb|AAP77191.1| polyribonucleotide nucleotidyltransferase [Helicobacter hepaticus
           ATCC 51449]
          Length = 709

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/717 (34%), Positives = 401/717 (55%), Gaps = 43/717 (5%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
           +  +++E+     +     +A+ ++G +L   G +V+LA+V    + K   +F PL+V Y
Sbjct: 1   MQHIKLEFENLSEQYSFNYVAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
            E+TYA  K P G+++RE +P+E EIL SR+IDR++RPLF K Y   T +++ V+ +D +
Sbjct: 61  IEKTYANNKFPSGFIKREGKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVVMVLSYDGK 120

Query: 124 SSPHVVSMVAASAALMLSGLPF----EGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
           S   + ++ AA+ AL +S LP     +  V G ++   +G +++NP +++  +  L+LFV
Sbjct: 121 SDLQLNALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNLFV 180

Query: 179 SGTQDAVLMVEL-------EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           SG  D +LM+E+        AN+LSE+  L+A+    N  K   +   +      K P  
Sbjct: 181 SGRDDELLMIEMKSIRTAQGANELSEENFLEALECAKNYIKNATQTYHQQFAPYKKSPFA 240

Query: 232 IDSKDFSKLEEEMSQMI----KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
            +S +  +L+E++  +I       +  +     K  R  Q+  L K++V     E    +
Sbjct: 241 FESAN-DELDEQLLNIIQTHYHTPITEAIKHMAKSERHTQLKALIKQVVR----ECEIED 295

Query: 288 EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347
           E ++       + K+VR ++L   +R DGR  + VR IS Q  +L   HGS LF RG TQ
Sbjct: 296 EKKVQEHIMAYKRKLVREMILQSHIRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQ 355

Query: 348 AIVVVTLGTREDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           A+V  T+G   D Q  + L      +  F+ HYNF   + GE S +G+  RRE+GHG LA
Sbjct: 356 ALVSATIGGDNDAQNYEMLGSKNALKKRFLFHYNFPSFSVGEASMIGSVGRRELGHGNLA 415

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           +RA+H  + +  +   T+R+VSEI ES+GSSSMA+VCG SLAL   G+ +   +AG+AMG
Sbjct: 416 KRALHSSVQEQDK---TIRLVSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMG 472

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           LV   +   IL+DISG EDH G MDFKVAG   GI+AMQMD+K+GGI++ I+  AL QAK
Sbjct: 473 LVTQDEQCAILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGITQEILCQALFQAK 532

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             R  IL  M +  ++  L      P+ E   IPP +I  VIG GG+VI+ I+E+    +
Sbjct: 533 EAREQILAIMEEARAKIVLN-DVILPKSESFMIPPHKIVEVIGAGGRVIKDIIERFEVSI 591

Query: 586 NI-DDDGTVKIASSSLAEIEAA--------------REMIRSITDVPEVNKIYKGQVVKV 630
           ++  + G V +++S++  ++ A              +E  +   +   V + + G++ K+
Sbjct: 592 DLARESGMVSVSASNVENLQKAKTFILQLVSSAGTKKEYEKVDWESYAVGERFVGKIKKI 651

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +DFG FV      DGL+HIS+++ ++  + S++      +  ++L   ++ K++L +
Sbjct: 652 VDFGIFVELPRGGDGLIHISKITKDKTQQLSEIFHNVSELECEILS-QNKNKVELGL 707


>gi|15645827|ref|NP_208005.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           26695]
 gi|81341641|sp|O25812|PNP_HELPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2314375|gb|AAD08258.1| polynucleotide phosphorylase (pnp) [Helicobacter pylori 26695]
          Length = 688

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 244/699 (34%), Positives = 385/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARMDNEFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L+A+       +       ++      E    +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEIFTPHQNELFFKESQGIVFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKEARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F ++GKI L +
Sbjct: 655 KQNMDKCQV-----VLKEGDSIRCRVISF-NKGKIALDL 687


>gi|308184960|ref|YP_003929093.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SJM180]
 gi|308060880|gb|ADO02776.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SJM180]
          Length = 688

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 244/699 (34%), Positives = 385/699 (55%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       K       E +  +S+     
Sbjct: 183 NMIEMHSLGQKLNALEEPLMLKALELAQKSLKETCTLYEKAFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + ++    +++           R    +++ +K+       HS ++  EI    E 
Sbjct: 243 ERLLDLLTNQYFDEIIKGIESSALSERENVFNEIARKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSG--TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKIPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +VA     +KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQVA-----LKEGDSIKCRVISFN-KGKIALDL 687


>gi|317012994|gb|ADU83602.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Lithuania75]
          Length = 688

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/699 (35%), Positives = 384/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  I+ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       K       E +  +S+     
Sbjct: 183 NMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEKAFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R     ++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKKISEA----HSEFSLEEIELSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK+ R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKKAREHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSNL-PATEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|28174955|gb|AAH27228.2| Pnpt1 protein [Mus musculus]
          Length = 647

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 203/619 (32%), Positives = 338/619 (54%), Gaps = 27/619 (4%)

Query: 98  SIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           SIRPLF   Y  +TQV+ N++  D  + P ++++  AS AL LS +P+ GPV   ++  I
Sbjct: 1   SIRPLFPAGYFYDTQVLCNLLAVDGINEPDILAVNGASVALSLSDIPWNGPVGAVRIGMI 60

Query: 158 NGQYVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI 215
           +G+ V+NP   E   S L+L V+G  +  ++M+E  A  + +     AI  G    + +I
Sbjct: 61  DGECVVNPTRREMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQII 120

Query: 216 EAISKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDL 271
           + I +L K                +++ +    +  E L    + +  +K  R + ++ +
Sbjct: 121 QGIQQLVKEIGVAKRTPQKIFTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKI 180

Query: 272 KKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGL 331
           +     +   +    ++ EI+  F  +  +V R+++L++  R DGRD  ++R+IS +V +
Sbjct: 181 RLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDM 240

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHYNFLPCATGE 387
            +  HGS+LF RG TQ +  VT  + E     +Q + +++G +  +FM+HY F P AT E
Sbjct: 241 FKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNE 300

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
             ++   +RRE+GHG LA +A+ PV+P    FP+T+R+ SE+ ES+GSSSMA+ CG SLA
Sbjct: 301 TGKVTGVNRRELGHGALAEKALCPVIP--KDFPFTIRVTSEVLESNGSSSMASACGGSLA 358

Query: 448 LMDAGVPISKPVAGIAMGLVK-------DGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           LMDAGVPIS  VAG+A+GLV        + +D+ +L+DI G ED+ G MDFK+AGT+ GI
Sbjct: 359 LMDAGVPISSAVAGVAVGLVTKTNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGI 418

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+Q D+K+ G+   I++ A+QQA   +  IL  M+K +S+ R    E  P VE + +P 
Sbjct: 419 TALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVKVPL 478

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----D 615
            +    +G GG  ++ +  +TG  ++  D+ T  I + +   +  AR+ I  I       
Sbjct: 479 SKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQ 538

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVK 673
             E   +Y   + ++ D G  V         L+H SQL   ++   + + ++ G  + VK
Sbjct: 539 QLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVK 598

Query: 674 LLDFDD-RGKIKLSMKVVD 691
               D   G+++LS KV+ 
Sbjct: 599 YFGRDPADGRMRLSRKVLQ 617



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 38/221 (17%)

Query: 28  DGAVLATYGETVVLATVVYDR-SLKDGQDFFP----------LTVNYQERTYAVGKIPGG 76
            G+ L   G+T VL TV +D        D               ++Y+   YA  +    
Sbjct: 245 HGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETG-- 302

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
              + +     E+    + ++++ P+  K +    +V   V++ +  SS  + S    S 
Sbjct: 303 ---KVTGVNRRELGHGALAEKALCPVIPKDFPFTIRVTSEVLESNGSSS--MASACGGSL 357

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---------------GSLDLFVSGT 181
           ALM +G+P    V G  V  +      NP   E +               G +D  ++GT
Sbjct: 358 ALMDAGVPISSAVAGVAVGLVTKT---NPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 414

Query: 182 QDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
              +  ++ +     +   ++++AI       K +++ ++K
Sbjct: 415 NKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNK 455


>gi|108563579|ref|YP_627895.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPAG1]
 gi|123373705|sp|Q1CS51|PNP_HELPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|107837352|gb|ABF85221.1| polynucleotide phosphorylase [Helicobacter pylori HPAG1]
          Length = 688

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 246/699 (35%), Positives = 383/699 (54%), Gaps = 33/699 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++ +Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVVKQATSSLLYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  I  ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       ++      E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEVFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFED 297
            +L + +     +++           R    +++ KK+       HS ++  EI    E 
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIAKKISEA----HSEFSLEEIEWSLEK 298

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           ++   +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT 
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358

Query: 358 EDEQYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            D Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +  
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKN 418

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  I
Sbjct: 419 KEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAI 475

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAK  R HIL  M
Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKEARKHILKIM 535

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            +   +  +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++       
Sbjct: 536 HEAKEKIVINFSHL-PTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVK 594

Query: 596 ASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
              +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+ 
Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
              +   +V     V+KEGD++  +++ F+ +GKI L +
Sbjct: 655 KQNMDRCQV-----VLKEGDSIRCRVISFN-KGKIALDL 687


>gi|317011412|gb|ADU85159.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SouthAfrica7]
          Length = 688

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/696 (35%), Positives = 382/696 (54%), Gaps = 27/696 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I    +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSVNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRIIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL LS +     V   ++  ++  +++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLSHVAPFKSVNACRIARVDNAFIINPSASLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
            M+E+ +     N L E ++L+A+       K       +       E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLEALELAQKSLKETCTLYEETFTPYQNELLFKESQGIVFN 242

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
           E  +  +  +         E     ++ +++  ++    S  HS +   EI    E ++ 
Sbjct: 243 ERLLDLLKNQYFNEIIKGIESSALSER-ENVFNEIARKISEAHSEFGLEEIEWSLEKVKK 301

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D 
Sbjct: 302 TEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDA 361

Query: 361 QYVDSLSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           Q  +SL      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q
Sbjct: 362 QTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ 421

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSD
Sbjct: 422 ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSD 478

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           ISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL QAKR R HIL  M + 
Sbjct: 479 ISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKRAREHILKIMHEA 538

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
             +  +      P  EI  + PD+I  +IG GG+VIR IVE+   K++++          
Sbjct: 539 KEKIVINFSHL-PMTEIFNVAPDKIIEIIGQGGRVIREIVERFEVKIDLNKPSGEVKIMG 597

Query: 599 SLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +   +   +E I +     +       ++++ + QV +++DFGAF+      +GL+    
Sbjct: 598 NKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQH 657

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +   +VA     +KEGD++  +++ F ++GKI L +
Sbjct: 658 MERCQVA-----LKEGDSIRCRVISF-NKGKIALDL 687


>gi|316971903|gb|EFV55625.1| polyribonucleotide nucleotidyltransferase [Trichinella spiralis]
          Length = 1172

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/725 (31%), Positives = 376/725 (51%), Gaps = 36/725 (4%)

Query: 1    MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPL 59
             F++ +V+ +    P+ LETG++AR +DG+ +A  G T V+ATVV   RS      F PL
Sbjct: 400  FFNMVSVQADVGSVPMILETGQLARLADGSAVAKMGATAVMATVVAKSRSAVQPMMFMPL 459

Query: 60   TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            TV+Y+ R  AVG+IP  +LRRE   +++EIL +RMIDRS+RP F +    + QV  +++ 
Sbjct: 460  TVDYRSRAAAVGRIPTNFLRREIGASDSEILTARMIDRSLRPAFGRDCYVDCQVSCSLLS 519

Query: 120  HDLESS-PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLF 177
             + +++   V+++ AASAAL  S + + GPV  A+V +++ + VLNP   + +  +L+L 
Sbjct: 520  LEADATGADVLAVNAASAALACSNVVWNGPVACARVCWVDSRPVLNPSRQQLEMSTLNLV 579

Query: 178  VS-GTQDAVLMVELEANQLSE---DVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-- 231
            +S G    ++MVE           D +        +  +  ++AI +LA    K   V  
Sbjct: 580  LSVGEHRRIVMVEAGGGSSGSCSLDQLYACCDLAVDSAQRTLDAIKQLAARAGKPKRVPS 639

Query: 232  ---IDSKDFSKLEEEMSQMIKEDLRVSCFIP--EKYVRCKQIDDLKKKMVSYF--SSEHS 284
               + +     L   +       L         +K    +++ +L+ +       +    
Sbjct: 640  GQLLPADKPDDLTGAIQLYASATLGELLLDKDLDKMAFDERVANLRHETADNLRQADCFQ 699

Query: 285  SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRG 344
                      F D+  K +R  + +   R DGR  + +R I   V L    HGS+LF RG
Sbjct: 700  DDQLRFFDVAFNDLLKKALRDQVFNTGHRRDGRTLDELRPIDCSVDLYPSLHGSALFQRG 759

Query: 345  DTQAIVVVTLGTREDEQYVD------SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
             TQ +  +T  +R+     D      S   T+   FM HYNF   AT E+S      RRE
Sbjct: 760  QTQVMCSLTFDSRQAAFRGDVFSLLNSGGITKEKKFMFHYNFASFATNELSSARGIGRRE 819

Query: 399  IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
            +GHG LA +A+ PV+P    FP+T+R+ +++ ES+GSSSMA+VC  SLALMDAGVP    
Sbjct: 820  LGHGALAEKALRPVVPS--DFPFTIRLAADVLESNGSSSMASVCAGSLALMDAGVPTKSS 877

Query: 459  VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMK-IGGISENI 516
            V+G+A+GL+    D+ +L+DI+G ED  G MDFK+A T +G +TA+Q+D K +GGI + I
Sbjct: 878  VSGVAIGLMS-KQDYRLLTDIAGIEDFFGDMDFKIAFTSNGEVTAIQLDTKLLGGIDQRI 936

Query: 517  MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
               A ++  +   ++  +M+  L++ R  +    P  E + +P  +   ++G GG  ++ 
Sbjct: 937  FRQACERGLQANRNVQRKMAACLAKPRAAVKPNGPVEEQLPVPASKRSRLLGAGGLNLKR 996

Query: 577  IVEQTGAKVNIDDDGTVKIASSSLAEIEAARE------MIRSITDVPEVNKIYKGQVVKV 630
            I  +TG +++  DD    + + +   ++ AR+            +  E   IY+ ++V++
Sbjct: 997  IEARTGVQISQLDDTVYSVFAPNKQAMQQARQSLDQLLADNVEEEQLEFGAIYETKIVEL 1056

Query: 631  MDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSM 687
             D G  V    +     V  SQL + R+A  + +  + G T+ VK    D   G+++LS 
Sbjct: 1057 KDAGLMVQLHPSLAPVFVPNSQLDSRRIAHPATLGFQVGQTLLVKYFGRDPVTGQMRLSR 1116

Query: 688  KVVDQ 692
            KV+ Q
Sbjct: 1117 KVLQQ 1121


>gi|109948073|ref|YP_665301.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           acinonychis str. Sheeba]
 gi|123362511|sp|Q17VM4|PNP_HELAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109715294|emb|CAK00302.1| polyribonucleotide nucleotidyltransferase [Helicobacter acinonychis
           str. Sheeba]
          Length = 688

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/690 (35%), Positives = 382/690 (55%), Gaps = 27/690 (3%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK 72
            +  +    ++A+Q+  ++L   G+T++LA+V  +R L   +DF PL V + E++YA GK
Sbjct: 10  NKTEEFALKQVAKQATSSLLYRLGKTIILASVCVERELV-SEDFLPLVVQFLEKSYAAGK 68

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+   V ++ 
Sbjct: 69  IPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALN 128

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELE 191
           AASAAL L+       V   ++  I+ ++++NP      Q SLDLFVSGT++++ M+E+ 
Sbjct: 129 AASAALFLAHAAPFKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKESLNMIEMR 188

Query: 192 A-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           +     N L E ++L+A+       K       +         +  +S+     E  +  
Sbjct: 189 SLGQKLNALEEPLMLEALELAQKSLKETCTLYEETFTPHQNALLFKESQGIVFNERLLDL 248

Query: 247 MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTV 306
           +  +         E     ++ +++  ++    S  HS +N  EI    E ++   +R +
Sbjct: 249 LKNQYFNEIIKGIESSALSER-ENVFNEIARKISEAHSEFNLEEIELSLEKVKKTEIRRM 307

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++  K+R D R  E VR IS +  LL   H S LF RG TQ++VV  LGT  D Q  +SL
Sbjct: 308 IIRDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESL 367

Query: 367 SGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q    +R
Sbjct: 368 EHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKDQ---VIR 424

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D+ ILSDISG ED
Sbjct: 425 LVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAILSDISGLED 484

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G MDFK+AG   GITAMQMD K+ GI   I+   L QAKR R HIL  M +   +  +
Sbjct: 485 AEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQTLLQAKRVREHILKIMHEAKEKIVI 544

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
                 P  EI  + PD+I  +IG GG+VIR IVE+   K++++          +   + 
Sbjct: 545 NFSHL-PTTEIFNVAPDKIIEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKERVL 603

Query: 605 AAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             +E I +     +       ++++ + QV +++DFGAF+      +GL+    +   +V
Sbjct: 604 KTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQHMERCQV 663

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           A     +KEGD++  +++ F ++GKI L +
Sbjct: 664 A-----LKEGDSIRCRVISF-NKGKIALDL 687


>gi|224537711|ref|ZP_03678250.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520634|gb|EEF89739.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 467

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 178/471 (37%), Positives = 277/471 (58%), Gaps = 12/471 (2%)

Query: 1   MFDVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           M +     IE   GR + LETG++A+Q+DG+V+   G T++LATV   +    G DF PL
Sbjct: 1   MINPIVKTIELPDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL 60

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
            V Y+E+  A G+ PGG+ +RE R ++ EIL  R++DR++RPLF   Y  E  V I +  
Sbjct: 61  QVEYKEKFSASGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILYS 120

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D    P  ++ +AASAAL +S +PF GP+   +V  I+GQ+V+NP  D+ ++  +DL V
Sbjct: 121 ADGIDIPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFDQLEKADMDLMV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
             T + ++MVE E +++SE  +L+A+   H   K    A  +LA+       V       
Sbjct: 181 GATYENIMMVEGEMSEVSELDLLNAMKAAHEAIKVQCLAQKELAEAVG--STVKREYCHE 238

Query: 239 KLEEEMSQMIKEDLRVSCF------IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
             +EE+ + + E      +         K+ R    D ++++  + FS E  +     I 
Sbjct: 239 VNDEELRKAVHEACYAKAYAIAASGNKNKHERMDAFDAIREEFKAQFSEEELAEKAALID 298

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
             + D++ + +R  +LD+  R+DGR ++ +R I +++  L   HGS++F RG+TQ++  V
Sbjct: 299 RYYHDVEKEAMRRSILDEGKRLDGRKTDEIRPIWSEINCLPGPHGSAIFTRGETQSLSTV 358

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT+ DE+ +D++    +  F++HYNF P +TGE        RRE+GHG LA RA+   
Sbjct: 359 TLGTKLDEKIIDNVLEHGKERFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRALKGQ 418

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           +P  A +PY +R+VS+I ES+GSSSMATVC  +LALMDAGV I +PV+GIA
Sbjct: 419 IP--ADYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIA 467


>gi|301118164|ref|XP_002906810.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262108159|gb|EEY66211.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 893

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 259/759 (34%), Positives = 389/759 (51%), Gaps = 93/759 (12%)

Query: 20  TGRIARQSDGAVLATYGETVVLATVVYDRS--------LKDGQDFFPLTVNYQERTYAVG 71
            G++A+ +DGAVLA+ G TV+L TVV                +DF PLTV+++ +++AVG
Sbjct: 87  VGKLAKLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSHAVG 146

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
            IP    RRE   ++ E+L SR++DR+IRPLF + Y   TQV+  V  +D  + P VV++
Sbjct: 147 LIPDNQKRREFTGSDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLVVAV 206

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVEL 190
            +ASA L +S +P++GPV   +V  ++GQ V+NP   + +  ++D+  +GT +  +MVE 
Sbjct: 207 NSASAVLSMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAGTAEHAIMVEA 266

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE-----PIVIDSKDFSKLEEEMS 245
             ++++E  + +A+   H      IE   KLA    K      P+ I  + ++K EE   
Sbjct: 267 SGDEVTEARLDEALDLAHTNAVSAIEEQKKLAAEHGKTKREYSPLFIAPEVWAKAEELGR 326

Query: 246 QMIKEDLRVSCFIPEKYVRCKQIDDLKKKMV----SYFSSEHSSWNEGEIVSVFEDIQAK 301
              +    ++     K  R +   ++  KM+     +F++ +   ++  I     D   +
Sbjct: 327 ADAEA--LIASGRVNKLARQEGEREVYNKMLTGMRQHFATANPPVDDAAIQRAAHDTFQR 384

Query: 302 VVRTVM--------LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V+R  +         +K VR+DGR    VR +  +  +L   HGSSLF RG+TQ +  VT
Sbjct: 385 VLRERILTIAKETKKNKPVRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSVT 444

Query: 354 LGTREDEQYVDSLSGTQR-----------NDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           LG  E    +       R              M+HY F P    E  R+G  +RR IGHG
Sbjct: 445 LGPLERGIRLRGALHEAREQAERDAPAPFKHAMLHYEFPPFCVNETGRVGGTNRRMIGHG 504

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            LA +A+ P+LP   +FPYT+R+ SE+  SDGSSSMATVCG SLALMDAGVP+ + VAGI
Sbjct: 505 ALAEKAVLPILPSITEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRRAVAGI 564

Query: 463 AMGLVKDGD------------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK-I 509
           A+GLV  GD            ++ +++DI G EDH G MDFKVAGT SG+TA+Q+D+K  
Sbjct: 565 AIGLVTAGDPFACQEKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSGVTALQLDVKLP 624

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP----RVEIMAIPPDQIRN 565
           GG+   ++   L++AK  RLHIL  MS  LSE R  L               I  + I  
Sbjct: 625 GGVPLFVLKEGLREAKHARLHILRRMSNELSEPRTTLKSSGSALPNVSIECVIATNLIGA 684

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDD--DGTVKIASSSLAEIEAAREM-------------- 609
           +IG+GG  IR +  +    V+I D  +G V++  ++    E AR+               
Sbjct: 685 LIGVGGSNIRDLESRFNVSVSIVDRREGIVRVVGAAGDA-EKARDWIQTELAGFASSGPR 743

Query: 610 ------------------IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                              +  T      + Y   V +VMDFGA +     + G VHIS+
Sbjct: 744 GSNGNDSNSSRDNDSQGSNKDRTFFFRKGERYTMHVKQVMDFGAILEASSGQRGFVHISE 803

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           LS ++V+   DVV EG  +  + L     GK+  S +V+
Sbjct: 804 LSRDKVSNIHDVVSEGQEMEFECLQDGASGKM--SRRVL 840


>gi|241582682|ref|XP_002403552.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
 gi|215502222|gb|EEC11716.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
          Length = 723

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 219/722 (30%), Positives = 353/722 (48%), Gaps = 58/722 (8%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           LKL +GR+A+ +DG+ +A  G+T V+ TVV     K     F               I  
Sbjct: 1   LKLASGRLAKFADGSAVAQIGDTSVMVTVVS--KTKPASATF-------LPLLLRLLIMR 51

Query: 76  GYLRRESRPTENEILIS---------RMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            + + ES P E++  +           +++RS+RPLF   Y  ETQ++ N++  D  + P
Sbjct: 52  LFGQSESVPHESQSRLPGSSYAQHALDLLNRSLRPLFPAGYFYETQLMCNLLAVDGINDP 111

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA- 184
            +VS+ AASAAL +S +P+ GPV   +V  I+G  V+NP   +  Q SL+L V+G + + 
Sbjct: 112 DIVSLNAASAALSVSDVPWGGPVGAVRVGLIDGDVVINPTRRQMAQSSLNLIVTGAEHSQ 171

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--SKLEE 242
           V+M+E   + +       A+  G  E + ++  I +  K+C +    ++       ++ +
Sbjct: 172 VVMLEASGDNVLLQDFQKAVRLGVKETQAIVRQIKEFQKLCGRPKRTVEKYFVPTPEMVD 231

Query: 243 EMSQMIKEDLRVSCFI--PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               + +  +R        +K  R   + +LK+ ++              +   F ++  
Sbjct: 232 SARLLAETRVRDILSDVGHDKISRDNALTELKQDILEKLQESFPGVESFLLNEAFTEVLK 291

Query: 301 KVVRTVMLDKKVRMD--------GRDSETVRDIS--AQVGLLQRTHGSSLFIRGDTQAIV 350
            V R  +L  +  +          R  E   D +       L     +  + +G   AI 
Sbjct: 292 AVFREQVLQNEKSIGVAYVHVLFWRLFEPCYDPNDCGDGWFLTLAAINIQYSKGKDGAIR 351

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           ++ L T     +V    G +  +FM+HY F P AT E  R G   RRE+GHG LA   + 
Sbjct: 352 ILNLMTP----FVLHFRGIKERNFMLHYEFPPYATNETGRSGPTGRRELGHGALAEHGLR 407

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P++P+   FP+T+R+ SE+ ES+GSSSMA+VCG S+ALMDAGVPI  P AG+A+GLV   
Sbjct: 408 PLVPR--DFPFTIRLTSEVLESNGSSSMASVCGGSMALMDAGVPIQAPAAGVAVGLVSLP 465

Query: 471 D--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           D        D+ +L+D+ G ED+LG MDFK+AGT  GITA+Q D+K+ GI   +++ A+Q
Sbjct: 466 DPDQPHQLKDYRLLTDLLGIEDYLGDMDFKMAGTKKGITALQADIKLPGIPVKVVMEAIQ 525

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA  G+  IL  M++V+S+ R Q  +  P  E + +PP Q    +G+GG  IR +  +TG
Sbjct: 526 QATEGKSEILRIMNEVISKPRAQKKDNWPVSEKLEVPPHQRARFVGLGGYNIRKLTAETG 585

Query: 583 AK-VNIDDDGTVKIASSSLAEIEAARE------MIRSITDVPEVNKIYKGQVVKVMDFGA 635
                I      K  + + A+    +       +        E   +Y  ++V++ + G 
Sbjct: 586 VNFFFIYSSIKYKCRNYTPADYSKIKNTNAFTLIRMIQKPNLEFGAVYTAKIVEIRESGV 645

Query: 636 FVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
            V         L+H SQL   +V   S +  +EG  + VK    D   GK++LS KV+  
Sbjct: 646 MVKLYPTMVPTLLHNSQLDQRKVNHPSALGFEEGQDITVKYFGRDPVSGKMRLSRKVLQS 705

Query: 693 NT 694
             
Sbjct: 706 AP 707


>gi|115534063|ref|NP_497324.3| hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
          Length = 738

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 220/708 (31%), Positives = 371/708 (52%), Gaps = 30/708 (4%)

Query: 5   HTVEIEWAGRP-LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            +V +++ G+  ++L+ G +AR +   V+A++G+  V+ATVV  +S +      PL V Y
Sbjct: 26  QSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDGSGVPLQVEY 85

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +    A+G+IP  +LRRE   ++NEILISR IDRSIRPL       ETQ+I   +  D  
Sbjct: 86  RPSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLP-GNSYETQIICKPLALDEN 144

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDED-QGSLDLFVSGT 181
           +   ++ + AAS AL +S   + GP+   +V     G + +NP  +E  + SL+L V+  
Sbjct: 145 ADQIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMR 204

Query: 182 Q-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           + +  +M+EL+  + S + +  A+         + EA+ +L    A+    + S+DFS L
Sbjct: 205 KHEKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQL---TAEPKDELASEDFSGL 261

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           E  + +  +E +   ++    +K  R  +I  + +++ +       +  +  I   +  +
Sbjct: 262 ERLLEETARERIYYVITDAGHDKISRDMEIKAIFEEICAE--KAFQTCEKDAIYRTYSTL 319

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             KV+R   L   +R DGR  +  R I+  V + ++ HG S+F RG TQ +  VT  +  
Sbjct: 320 VKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPA 379

Query: 359 DEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
              + DS    L   ++  FM+HY F   A  E     + +RREIGHG LA +++  + P
Sbjct: 380 AAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLFP 439

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---- 470
             A FPY  R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ D     
Sbjct: 440 --ADFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAEPE 497

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +L+DI G ED+ G MDFKVAGT  G TA Q+D+K GG++   +  +LQ A+ G  H
Sbjct: 498 TKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAARAGIDH 557

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +L +MS +    R Q     P ++ M I P +   +    G   + I  +TG K++ +D+
Sbjct: 558 VLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVKISAEDE 617

Query: 591 GTVKIASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARD 644
             + + +    +++ A +M+      + T       I + ++V++++ G ++   G +R 
Sbjct: 618 AHISLLAQDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQAEIVEIIERGVYLTLPGSSRR 677

Query: 645 GLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             +  + LS   V     + +K GD + V     D+  G I+LS K +
Sbjct: 678 IFMSNNHLSLNPVRHPDVLGLKIGDKMSVHWFGRDEHTGNIRLSRKTL 725


>gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 472

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/458 (51%), Positives = 323/458 (70%)

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
              + ++L   +     E +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ 
Sbjct: 7   PKPEATELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEGSPSASEVK 66

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           + F +I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV 
Sbjct: 67  AAFGEIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVA 126

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           TLGT  D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIGHGRLARR++  +
Sbjct: 127 TLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAM 186

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           LP    FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G+ 
Sbjct: 187 LPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEK 246

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           F IL+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+IL
Sbjct: 247 FAILTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNIL 306

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            +M++++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DDG+
Sbjct: 307 GQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGS 366

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KI   S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS L
Sbjct: 367 IKIFGESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISML 426

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S  RV K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 427 SDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 464



 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 129/354 (36%), Gaps = 49/354 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-----DGQDFFPLTVNYQER 66
           RPL +E G + + + G+ L T GET  L        R  +     +G+   P  ++Y   
Sbjct: 97  RPLNIEVGVLPK-THGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 155

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R       EI   R+  RS++ +      +    +V+  + + +  S
Sbjct: 156 PFSVGECG-----RMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSS 210

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVS 179
           S  + S+  AS ALM +G+P + PV G  +  +  G+           ++  G +D  V+
Sbjct: 211 S--MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVA 268

Query: 180 GTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           GT   V  ++++     ++E+++  A+         ++  ++++      E         
Sbjct: 269 GTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPT-- 326

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRC------KQIDDLKKKMVSYFSSEHSSWNE--G 289
                           ++  I    +R         I  + ++  +    E     +  G
Sbjct: 327 ---------------MIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 371

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           E     E  + +V+      +  ++     E + D  A V +L    G      
Sbjct: 372 ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISM 425


>gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
 gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
          Length = 638

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/592 (42%), Positives = 353/592 (59%), Gaps = 13/592 (2%)

Query: 114 IINVMQH-DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
           +  ++ H + +  P + +++AASAAL LSG+PF GPVVG  V+    +   N  + E + 
Sbjct: 1   MCKLLAHGNRKVLPEIPALIAASAALQLSGIPFSGPVVGVDVNMHGSETTCN-EIRETED 59

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            L+LFV+ T+++V+MVE EAN+ SE+ V+ A+       KP+   I++  K       V 
Sbjct: 60  GLELFVACTEESVVMVEAEANEASEEEVVHALSEALKSAKPIFSFINEFVKSVTTVKPVG 119

Query: 233 DSKDFSKLEEEMSQMIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
              D  +L E++       L       I  K  R  +++ +     +    E   + E E
Sbjct: 120 VLYDNEELCEKVRAACNAQLESVYNERISSKEERHNKLNQVYANTFARL--EDDGYTESE 177

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           I+     ++ ++VR  +L++ +R DGR    +R IS  +  L  THGS+LF RG TQ++V
Sbjct: 178 ILFFIRKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLV 237

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
           V TLG+ +DEQ +D + G +R   ++HYNFLP A GEV  + AP RREIGHGRLA +A+ 
Sbjct: 238 VATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKAVK 297

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            VLP    FPYTLR+VSEITESDGSSSMATVCGSSLALMD GVPI+K VAGIAMGL+ DG
Sbjct: 298 AVLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDG 357

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               ILSDISGDED LG MDFKVAGT +GI A+QMDMK+ GIS   +  AL QA  GRLH
Sbjct: 358 ARSAILSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRNALNQALAGRLH 417

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M   +++ R  L +  P++    I  D +  VIG GGK IRGI   T  K++ID +
Sbjct: 418 ILEKMEHAIAKPREGLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSTKIDIDQN 477

Query: 591 GTVKIASSSLAEIEAAREM-------IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
             V I + +   +  A+           S     ++ ++Y+G++V ++DFG FV     +
Sbjct: 478 NYVYIMADTEEALMEAKTRVDMASGTSDSNVSQLKIGELYEGKIVSIVDFGLFVVLPNKQ 537

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +GLVHIS++S  RV        EG +V V++ D    GKIKL+M++ +   G
Sbjct: 538 EGLVHISEISRNRVNDIRAEHTEGQSVTVRIKDIGSDGKIKLTMRIDEDRVG 589



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKD-------GQDFFPLTVNYQERTYAVGKIPGGYLRR 80
            G+ L T G T  L          +       G+    + ++Y    YAVG++  G LR 
Sbjct: 223 HGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEV--GALR- 279

Query: 81  ESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
              P   EI   R+  ++++ +    + +    +++  + + D  SS  + ++  +S AL
Sbjct: 280 --APGRREIGHGRLALKAVKAVLPGKEVFPYTLRLVSEITESDGSSS--MATVCGSSLAL 335

Query: 139 MLSGLPFEGPVVGAQVDYINGQ---YVLNPRL--DEDQGSLDLFVSGTQDAVLMVELEAN 193
           M +G+P    V G  +  I       +L+     ++  G +D  V+GT++ ++ ++++  
Sbjct: 336 MDTGVPITKHVAGIAMGLITDGARSAILSDISGDEDMLGDMDFKVAGTRNGIVALQMDMK 395


>gi|323449631|gb|EGB05517.1| hypothetical protein AURANDRAFT_59314 [Aureococcus anophagefferens]
          Length = 736

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/702 (34%), Positives = 381/702 (54%), Gaps = 27/702 (3%)

Query: 4   VHTVEIEWAG--RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            H V I+      PL LETGR+ RQ+D AV+A  G T V  T+    S   G DF P++V
Sbjct: 39  PHAVSIDLGDGHEPLVLETGRLGRQADAAVIAKRGGTTVYTTLCVG-SADGGGDFLPMSV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            YQER  + G+  GGY +R+ R  + EIL  R+IDR +RP     +  + Q+I  V+ +D
Sbjct: 98  EYQERYSSTGRTSGGYNKRDGRANDKEILTCRLIDRPLRPTVVDGWCADLQLISWVLSYD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQV---DYINGQ--YVLNPRLDEDQGS-LD 175
            +    V+++ AA+AAL LS +P    V  A+V      +G   +V +P ++E + +   
Sbjct: 158 GQYPADVLAVQAAAAALQLSTVPTLCDVGCARVVATADDDGAVAFVSDPTVEELEAAAFQ 217

Query: 176 LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
           + V    D+V+MVE E + + +DV ++A+     +   V EAI   A    ++   I +K
Sbjct: 218 IVVGSGGDSVVMVEAEGDFVGDDVAVEALTRATADAARVGEAIGAWAADL-RDSGAIPAK 276

Query: 236 DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVF 295
           +           +K  L  +        + + +D    K++++  ++   + + +     
Sbjct: 277 EAGDRVRPFPADLKAALAEAFADDAHRKKYEALDA---KIIAF--ADERGYGKADARRAA 331

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           + +  K +  V+  +  R DGR ++ VR I   +  L   HGS++F RG+TQ++   TLG
Sbjct: 332 KKLTEKCLGDVVRAEGKRSDGRATDEVRPIDVAMRPLPTAHGSAVFTRGETQSLATCTLG 391

Query: 356 TREDEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
                   D      +    F + Y F P + GE  R+GAP RRE+GHG LA +A+   +
Sbjct: 392 DNSMNLRNDDALDDAKPDKRFYLQYAFPPSSVGETGRVGAPGRREVGHGALAEKALRAAM 451

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG-LVKDGDD 472
           P    FPY++R+ S ITES GSSSMA+VCG  LAL+D GVP+   VAG+AMG L+ DG+D
Sbjct: 452 PDKDAFPYSVRVESLITESCGSSSMASVCGGCLALLDGGVPLRCSVAGVAMGVLLADGED 511

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            ++L+DI G ED LG MDFKVAG+  GI+A Q+D+K  G+S   +  A+ QA+  RLH+L
Sbjct: 512 PVVLTDILGVEDALGSMDFKVAGSAEGISAFQLDVKTLGLSAATLGDAMGQARAARLHVL 571

Query: 533 NEM-SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDD 590
           +EM ++  +E    L    PR + + + P  I  +IG GG  I+G++++   + +++ + 
Sbjct: 572 SEMATRGTAEPATTLAPSVPRSKQLQVDPSFIGKIIGKGGATIKGLIDEFALSNIDVSEA 631

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVH 648
           G V ++      +  A E I ++     V+K Y G VV + +FGAFV F      +GL H
Sbjct: 632 GLVTVSGLDDEGVAGAVEAITALC----VDKTYAGSVVSIKNFGAFVEFDDFPGLEGLCH 687

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKV 689
           IS+L+ ERV      ++ GD+  VK+L   DD  K+ LS K 
Sbjct: 688 ISELALERVRNIEKFIEVGDSFDVKVLAVDDDSKKLSLSRKA 729


>gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 463

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 246/456 (53%), Positives = 334/456 (73%), Gaps = 4/456 (0%)

Query: 244 MSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
           M  + ++ +R +  I +K  R   +   K+++    S E     +  + S  + +++ V+
Sbjct: 1   MKGLGEDKMRAAYAITDKQQRVAAVSAAKEEIKGQLSEEQLE--DANLGSALKKLESTVL 58

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  ++  K R+DGR  + VR I ++  +L RTHGSSLF RG+TQA+VV TLGT +DEQ +
Sbjct: 59  RADVVKNKRRIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQII 118

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           D+L G  R++F++HYNF P + GEV R+G+P RREIGHG+LA RA+  VLP    FPYT+
Sbjct: 119 DALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTI 178

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDISGD 482
           R+VSEITES+GSSSMA+VCG SL++MDAGVP+  PVAG+AMGLV + D ++ IL+DI GD
Sbjct: 179 RLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGEYAILTDILGD 238

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           EDHLG MDFKVAGT++GIT++QMD+K+ GI+  IM  AL QAK GR+HIL+EM K LSE+
Sbjct: 239 EDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALAQAKDGRMHILSEMGKALSEA 298

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
             +     PR+E+M IP D+IR VIG GGKVIR IVE +GAKV+I+D+G +KIAS +   
Sbjct: 299 -GEFSVHAPRIEMMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGLIKIASPNGES 357

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I+ A +MI SI   PE  K+YKG+VVK++DFGAFV+F G RDGLVH+SQ+   R+   SD
Sbjct: 358 IQKAYDMIHSIVAEPEEGKVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSD 417

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V+KEG  V+VKLL FDDRGK++L+MK+VDQ TG+ +
Sbjct: 418 VLKEGQEVFVKLLGFDDRGKVRLAMKMVDQETGEEV 453



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 119/298 (39%), Gaps = 41/298 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-------SLKDGQDFFPLTVNYQER 66
           RP++ ET  + R + G+ L T GET  L                  G       ++Y   
Sbjct: 78  RPIQSETSVLPR-THGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRSNFLLHYNFP 136

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG++      R   P   EI   ++  R+++ +      +    +++  + + +  S
Sbjct: 137 PYSVGEVG-----RVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRLVSEITESNGSS 191

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRL---DEDQGSLDLFV 178
           S  + S+   S ++M +G+P + PV G  +  +   +G+Y +   +   ++  G +D  V
Sbjct: 192 S--MASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGEYAILTDILGDEDHLGDMDFKV 249

Query: 179 SGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
           +GT++ +  ++++     ++ +++  A+    +    ++  + K      +  +      
Sbjct: 250 AGTENGITSLQMDIKVAGITPEIMKKALAQAKDGRMHILSEMGKALSEAGEFSVHAPRI- 308

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
                 EM Q+  + +R       K +R         ++V    ++    +EG I   
Sbjct: 309 ------EMMQIPTDKIREVIGSGGKVIR---------EIVEVSGAKVDINDEGLIKIA 351


>gi|196007348|ref|XP_002113540.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
 gi|190583944|gb|EDV24014.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
          Length = 741

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/697 (29%), Positives = 345/697 (49%), Gaps = 68/697 (9%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
               +K   G++A  +DG+VL   G T VL T V  R+      F PL V+Y+E+  A G
Sbjct: 50  GNSEIKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGFAPLRVDYREKASATG 109

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           KIP  + +RE  P+E EIL SR IDRSIR  F +    E Q++ ++M  D E    V ++
Sbjct: 110 KIPVNFFKRELGPSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDTIVPAI 169

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVEL 190
                                +V YIN + ++NP   E  Q  LDL +  +   ++M+E 
Sbjct: 170 NG----------------GAVRVGYINDEVIINPTRVELYQSKLDLVIVASAKGLVMLEG 213

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIK 249
            A++L +  VL AI +G  E + V++A+        K+   +   +    ++E    +I 
Sbjct: 214 TASELPDAGVLKAITYGLEEAQNVVKAVEDFGHRYGKDKTNLTFYRLDESIKEGAYNLIG 273

Query: 250 EDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           + +      F  +K  R +    +  +          + +  ++   F  +  + +   +
Sbjct: 274 DQINDIMLDFSHKKLSRDRAARKVVDENFKTLQEMFPNADNFQLSDSFSSVTKRCITQNV 333

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + K +R DGR    +R I A++ +    HGSSLF RG++Q                    
Sbjct: 334 MTKSIRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ-------------------- 373

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                       F P A  E+ R+   SRREIGHG LA+ A+  V+     FP+T+R+  
Sbjct: 374 ------------FPPYANNEIGRVMENSRREIGHGTLAKNALRSVVS--DDFPFTVRLTG 419

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD------FIILSDISG 481
           ++  S+GS+SMA+ CG SLALMDAGVPIS+ +AG+AMGLV +  D      + IL+DI+G
Sbjct: 420 QVLMSNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANPSDDGSKFNYKILTDIAG 479

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED+ G MDFK+AG+  GIT++Q D K+ G+S  ++  A++++   R  +L+ M  V+ +
Sbjct: 480 IEDYFGEMDFKIAGSREGITSLQADFKVTGVSMELIEEAIKKSAVARGKVLDIMYGVIDK 539

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
            RL +    P  +I+ +P  +  +++G+GG  I+G+ E+ G  +N  D+  V I + S  
Sbjct: 540 PRLDVKSSAPVFDIVDVPAGKRFSIVGLGGVTIKGLQEEYGCDINFVDEDKVSIYAPSAK 599

Query: 602 EIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHFCGARDG-LVHISQLSTE 655
            +   ++ I  +         + ++IY G++V + +FG  +         L+H+SQL   
Sbjct: 600 ALANVKQRIEELMADLKEPDLKFSQIYTGKIVDIKNFGVMLEMEPNTQPILLHVSQLDHR 659

Query: 656 RVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           RV++   +    G  + VK    D    + +LS K +
Sbjct: 660 RVSRPELLGYSIGHEMTVKCFGRDPITNRYRLSRKAL 696


>gi|268575784|ref|XP_002642872.1| Hypothetical protein CBG15142 [Caenorhabditis briggsae]
          Length = 721

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 211/715 (29%), Positives = 358/715 (50%), Gaps = 56/715 (7%)

Query: 3   DVHTVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +V +++ G+  L+L+TG +AR +  AV+A+ G+  V+ATVV  +  +   +  PL V
Sbjct: 24  NERSVSVDFNGKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQV 83

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+    AVG+IP  +LRRE   ++NEILISR IDRSIRPL       ETQVI   +  D
Sbjct: 84  EYRPSASAVGRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPAN-SYETQVICKPLALD 142

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV--LNPRLDEDQ-GSLDLFV 178
             +   ++ + AAS+AL +S  PF GP+   +V       +  +NP  +E +  S+++ V
Sbjct: 143 ENADQIMLGINAASSALHISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNMIV 202

Query: 179 SGTQD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +  ++   +M+EL+  +   + + +A+       + +  A+ +L      E   +  K  
Sbjct: 203 AMRRNQKTVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELG---GIEKDELPEKTT 259

Query: 238 S-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           + ++ E +  + +E +                                 +   +I   + 
Sbjct: 260 TMEILEILEALARERIYYVMTDT-----------------------LQPFPPADIYQCWS 296

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  KV+R   L   +R DGR     R I  QV + ++ HG S+F RG TQ +  VT  +
Sbjct: 297 FLVKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDS 356

Query: 357 REDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
                + DS    L   ++  FM+HY F   AT ++    + +RREIGHG LA +A+ P+
Sbjct: 357 PTAAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGASRSLNRREIGHGALAEKALKPL 416

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
            P    FPY +R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ D  +
Sbjct: 417 FPT--GFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDEKE 474

Query: 473 ----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
               + +L+DI G ED+ G MDFK+AGT +G TA Q+D+K  G++   +  +L  A+ G 
Sbjct: 475 PETNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAARAGI 534

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
            H+L +M+ +    R Q     P +E M I P +   +    G   + I  +TG K++++
Sbjct: 535 DHVLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVKISVE 594

Query: 589 DDGTVKIASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           D+  + + + S  +++ A  M+      + T       I + ++V+  +F     +C   
Sbjct: 595 DESNISLLAPSQEKLQKALSMMNGVLESNTTLDFAFGSIIQAEIVENNEFPDNGPWCVRH 654

Query: 644 DGLVHISQLSTERVAKTSDV-------VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
                 +    ++ +K+S +       +K GD +       D+  G I+LS K +
Sbjct: 655 TTRKLPTSPYQQQPSKSSSIRHPDVLGLKVGDKMACTWFGRDEHTGNIRLSRKTL 709


>gi|27262520|gb|AAN87541.1| Polyribonucleotide nucleotidyltransferase [Heliobacillus mobilis]
          Length = 445

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 173/409 (42%), Positives = 260/409 (63%), Gaps = 3/409 (0%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L +ETGR+A+Q+ G+V+A YG+TVVL+T    +  + G DFFPLTV+Y+ER YAVGKIPG
Sbjct: 34  LTVETGRVAKQAGGSVMARYGDTVVLSTATASKEPRPGIDFFPLTVDYEERLYAVGKIPG 93

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           G+++RE RPTE  IL SR+IDR IRPLF K ++N+ QV+  V+  D +  P +V M+ AS
Sbjct: 94  GFIKREGRPTEKAILSSRLIDRPIRPLFPKGFRNDVQVVSTVLSVDQDCPPDIVGMIGAS 153

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQ 194
            AL LS +PFEGP+ G  V  ++G+ ++NPR++E ++  + L V+GT+DAV+MVE  AN+
Sbjct: 154 CALCLSDVPFEGPIGGVVVGRVDGKLIINPRMEEAEKSDMHLVVAGTKDAVMMVEAGANE 213

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLR 253
           + E+ +++AI+FGH E + +++   ++ K   K    VI  K   ++++ + + + E + 
Sbjct: 214 IPEEDMIEAIMFGHQEIQRIVQFQEEMMKTAGKPKREVILHKVNPEIDQAVRRFVGEKML 273

Query: 254 VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVR 313
            +   P+K  R   +D +K + V     +     +G I+ V + +  ++VR ++   K R
Sbjct: 274 EAIQNPDKLSRQADMDKVKAETVEAILPQFPDG-QGAILEVLDTMVKEIVRKLITVDKQR 332

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
            DGR  + +R I+ +VG+L RTHGS+LF RG TQ + V TLGT  D Q +D L   +   
Sbjct: 333 PDGRKVDEIRPITVEVGILPRTHGSALFTRGQTQVLNVCTLGTISDLQILDGLGVEESKR 392

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +M HYNF   + GE   M  P RREIGHG LA RA+ PV+P     P T
Sbjct: 393 YMHHYNFPSYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDAVPVT 441



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 18/228 (7%)

Query: 321 TVR-DISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS--LSGTQRNDFMM 376
             R +++ + G + ++  GS +   GDT  +   T  ++E    +D   L+         
Sbjct: 29  DCRTNLTVETGRVAKQAGGSVMARYGDTVVLSTAT-ASKEPRPGIDFFPLTVDYEERL-- 85

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG-- 434
            Y       G + R G P+ + I   RL  R I P+ P    F   +++VS +   D   
Sbjct: 86  -YAVGKIPGGFIKREGRPTEKAILSSRLIDRPIRPLFP--KGFRNDVQVVSTVLSVDQDC 142

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
              +  + G+S AL  + VP   P+     G+V    D  ++ +   +E     M   VA
Sbjct: 143 PPDIVGMIGASCALCLSDVPFEGPI----GGVVVGRVDGKLIINPRMEEAEKSDMHLVVA 198

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           GT   +  ++       I E  M+ A+    +    I+    +++  +
Sbjct: 199 GTKDAVMMVEAGANE--IPEEDMIEAIMFGHQEIQRIVQFQEEMMKTA 244


>gi|71901372|ref|ZP_00683466.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71728871|gb|EAO31008.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 469

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/462 (51%), Positives = 319/462 (69%), Gaps = 2/462 (0%)

Query: 234 SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS--EHSSWNEGEI 291
                 L   + ++I   L  +  I EK  R   I  +K  ++   +   E   WN  E+
Sbjct: 4   PAKNDALVIALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAEL 63

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +  F +++ + +R  +LD KVR+DGR  E VR I+ +VG+L R HGS LF RG+TQAIVV
Sbjct: 64  LKEFGELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVV 123

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
            TLGT  D Q +D+++G  + +F+ HYNF P + GE  R G   RREIGHGRLARR +  
Sbjct: 124 TTLGTARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLA 183

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+P   +FPYT+R+VSEITES+GSSSMA+VCGSSLALMDAGVP+  PVAGIAMGLVK+G+
Sbjct: 184 VMPSLDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGE 243

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            F++LSDI GDEDHLG MDFKVAGT  G++A+QMD+KI GI+E IM  ALQQAK GRLHI
Sbjct: 244 RFVVLSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHI 303

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L EM K L+  R +L ++ PR+  + I PD+IR+VIG GG  I+ I + TG +++I DDG
Sbjct: 304 LGEMDKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDG 363

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T+ IAS + A    A+  I  IT   E  +IY+G+V K+MDFGAFV     +DGLVH+SQ
Sbjct: 364 TIVIASVNNAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQ 423

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +S+ERV +  D +KEGD V VK+L+ D +G+I+LS+K V++ 
Sbjct: 424 ISSERVERVGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEE 465



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 16/206 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+ ++ G + R   G+ L T GET  +  V    + +DGQ    +T  Y+E     Y  
Sbjct: 95  RPITVKVGVLPR-VHGSGLFTRGETQAIV-VTTLGTARDGQVIDAVTGEYKENFLFHYNF 152

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R       EI   R+  R +  +      +    +V+  + + +  SS  +
Sbjct: 153 PPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPSLDEFPYTIRVVSEITESNGSSS--M 210

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVSGTQD 183
            S+  +S ALM +G+P + PV G  +  +  G+  +        ++  G +D  V+GT +
Sbjct: 211 ASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILGDEDHLGDMDFKVAGTSE 270

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFG 207
            V  ++++     ++E+++  A+   
Sbjct: 271 GVSALQMDIKIEGITEEIMRQALQQA 296


>gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
           49179]
 gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
           49179]
          Length = 679

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 245/668 (36%), Positives = 366/668 (54%), Gaps = 15/668 (2%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           IA+Q+  A+L  +   V+LAT++ D++  + ++F PL+V++ +R YA+G+IPGG+ +RE 
Sbjct: 15  IAKQATSALLYRHKGCVILATIMVDKACVE-ENFLPLSVHFSQRAYAIGRIPGGFNKREG 73

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           + +E E L SR IDRS+RPLF+K Y + TQ+ + V+ HD +S   V ++ AA+ AL L+ 
Sbjct: 74  KLSEFETLTSRAIDRSLRPLFAKDYAHPTQITLLVLSHDQQSDLQVCALHAAANALYLAN 133

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ-LSEDVV 200
           L  E  V   +V  I G+ V NP   E Q   L+L+VSGT +A+LMVE+ + + L E  +
Sbjct: 134 LGIEN-VAAVRVGRIGGKIVYNPNATELQKSDLNLYVSGTSEALLMVEMHSQESLPEATL 192

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCAKEPIVI--DSKDFSKLEEEMSQMIKEDLRVSCFI 258
           LD +       +       K      K P+ I   +     LE  + Q   + +      
Sbjct: 193 LDLLEKAQKHIRENCLQFQKSFAPHRKAPLAINTPTPPNPTLELLLKQHFHQQILEIKTQ 252

Query: 259 PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318
             K  R      L   +      +  S+   +I    E    + +R  +L  K R DGR 
Sbjct: 253 MAKSEREVDFAHLTTAIAHTLQEKGHSYTFEQIQRSLERYTHQCIREEILHTKTRPDGRG 312

Query: 319 SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHY 378
            ET+R IS +  LL   HGS+LF RG TQA+VV T+G   D +  ++L G  +  FM HY
Sbjct: 313 FETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENLDGLHKERFMFHY 372

Query: 379 NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
           NF P + GE + + AP RREIGHG LA+ A+   + ++ Q   T+R+VSEI ES+GSSSM
Sbjct: 373 NFPPFSVGEATPLSAPGRREIGHGNLAKCALQGSILESDQ---TIRLVSEILESNGSSSM 429

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
           A+VCG SLAL  +G+ +   +AG+AMGL+  G++  ILSDIS  ED  G MDFK+AG   
Sbjct: 430 ASVCGGSLALYASGIKLKSLIAGVAMGLIIQGEETAILSDISALEDMQGDMDFKIAGNLE 489

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G+ A+QMD KI G+S  ++   LQQAK  R  IL  M + +        +  P  E  ++
Sbjct: 490 GVVALQMDTKIAGLSLALLSQILQQAKEARGAILECMEQAIEGIMPN-TDALPTQESFSV 548

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP- 617
           PP +I  +IG  GK I+ I+E+   ++ +D        S     +  A+E I  +T    
Sbjct: 549 PPKKIATIIGPSGKSIKEIIERFEVQIELDKTSGAVCISGGAQNVLDAKEYILEMTGFQP 608

Query: 618 -EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             V ++ + ++ KV+DFG FV      D L+H S L    + K  D   E +T+  +++ 
Sbjct: 609 YHVEEVLEVEIKKVVDFGIFVRLPRGGDALLHKSHLEKRDLDK--DSFMENNTLECRIIA 666

Query: 677 F-DDRGKI 683
             DD GKI
Sbjct: 667 IHDDSGKI 674


>gi|322378832|ref|ZP_08053258.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
 gi|322380127|ref|ZP_08054375.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
 gi|321147432|gb|EFX42084.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
 gi|321148756|gb|EFX43230.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
          Length = 672

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/689 (34%), Positives = 353/689 (51%), Gaps = 39/689 (5%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           IE  G+  K++   +A+ +D A+L  Y  TV+LA+VV DR   +  DF PL+V Y +R Y
Sbjct: 4   IEINGQEFKID--YVAKTADSALLYRYKGTVILASVVVDRQHTEA-DFLPLSVQYAQRAY 60

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AVG+ P  +LRRE +    E L SR+IDRS+RPLF K Y   TQ+ + V+ +D +S   V
Sbjct: 61  AVGRFPSNFLRREGKMDNFETLTSRLIDRSLRPLFPKGYTYPTQITLLVLSYDYQSDLQV 120

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMV 188
            ++ AAS AL L+ +  +  +   +         LN    +   SLDL V G  +A+LM+
Sbjct: 121 CALNAASNALYLANIGVDTTIHAMR---------LNGT--DTAKSLDLLVVGNAEAILMI 169

Query: 189 ELEAN-----QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP---IVIDSKDFSKL 240
           E++        L E  +LD I   H + +              K     +    K  + L
Sbjct: 170 EMQIKDSSQHALEESKLLDLIRHAHTQIQEYCMHYYHHFTPHRKPKNLSMKDPIKPNTAL 229

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
            + ++   K  +  +  +  +  R  Q+ DL +K+    + E    +  E+    +    
Sbjct: 230 IDLLNSRFKAIILETSSLMARSERNAQVQDLIQKIAEELNLEGQQVSLEELKLALQTCLY 289

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             +R+ +++K+ R DGR    +R I  +  LL   H S LF RG TQA+V  TLG+  D 
Sbjct: 290 AHLRSEIIEKQQRPDGRTLTQIRPIYIETNLLPACHSSVLFERGHTQALVACTLGSENDA 349

Query: 361 QYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           +    L        +  FM+HYNF P   GE   MGA SRRE+GHG LA++A+   LP  
Sbjct: 350 KQ--GLGTYEKTPSKERFMLHYNFPPFCVGEAMPMGALSRRELGHGHLAQKALESTLP-- 405

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            Q P  +R+VSEI ES+GSSSMA+VC  SLAL  AG+ I   VAG+AMGL+ +GD + IL
Sbjct: 406 EQHP-VIRLVSEILESNGSSSMASVCAGSLALKAAGIDIRDLVAGVAMGLMVEGDKYAIL 464

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SDIS  ED  G MDFK+AGT  G+ AMQMD K+ GI    +   L+QAK+ R  IL  M 
Sbjct: 465 SDISALEDMQGDMDFKIAGTHQGVLAMQMDTKLSGICLEWLGEILKQAKQARTVILERMQ 524

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
           ++     +   +  P  E   IPP +I  +IG GGK I+ I+++   ++++D        
Sbjct: 525 EIAQIMPIN-TKAMPISESFYIPPSKISALIGTGGKNIKEILQRFAVQIDLDKQSGQVCI 583

Query: 597 SSSLAEIEAAREMIRSITDVPEV--NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
                 +  A++ I    ++P     +  +  V KV+DFG FV   G    L+H S L  
Sbjct: 584 HGIQEAVLKAKDFILESLEIPSYVAGEQVQAWVKKVVDFGVFVRLSGGGQALLHKSDLKD 643

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
                    +K   ++  ++    ++GK+
Sbjct: 644 LDWQN----LKPDTSLTCQVSKI-EQGKV 667


>gi|307700019|ref|ZP_07637068.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mobiluncus mulieris FB024-16]
 gi|307614780|gb|EFN94000.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mobiluncus mulieris FB024-16]
          Length = 542

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/528 (38%), Positives = 302/528 (57%), Gaps = 31/528 (5%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATY-GETVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R L+ ETG +ARQ+ G+ + T  GETVV A     +  KD  DFFPLTV+ +E+ Y
Sbjct: 17  KFGKRVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQY 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A G+IPG + RRE RP    IL +R+IDR +RP F K  +NE QV+  VM    + +  V
Sbjct: 77  AAGRIPGSFFRREGRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAYDV 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT----QD 183
           V++ A+S +  L+GLPF GP+ G ++  I+GQ+V  P   + +  + ++ V+G       
Sbjct: 137 VAINASSMSTQLAGLPFSGPIGGTRLSLIDGQWVAFPTYPQMEQATFNMVVAGRVVGEDV 196

Query: 184 AVLMVELEANQLSEDVV--------LDAIIFGHNECKPVIEAISKLAKMCAKE------- 228
           A++MVE      + +++         + +       KPVI  + +     A +       
Sbjct: 197 AIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCRAQSEVAAKAAKETAE 256

Query: 229 -PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE--HSS 285
            P+  D +D     E M   ++ DL  +  I +K  R  +  +++   +   + E     
Sbjct: 257 YPLFPDYEDN--HFEAMKAEVEADLSEAIQIADKQTRENRETEIRDAAIEKLTVEGGEFE 314

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGD 345
             E E+ + F+ ++ K+VR  +L +  R+DGR  + +R ++A+V +L R HGS+LF RG+
Sbjct: 315 EQEKELKAAFKALEKKLVRARVLHEGKRIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGE 374

Query: 346 TQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
           TQ + V TL     EQ +D+LS      +M  YNF P  TGE  R+G+P RREIGHG LA
Sbjct: 375 TQVLGVTTLNMLRMEQQLDNLSPITHKRYMHQYNFPPYCTGETGRVGSPKRREIGHGHLA 434

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
             A+ PV+P   +FPY +R VSEI  S+GSSSM +VC S+L+L++AGVP+  P+AGIAMG
Sbjct: 435 EMALVPVIPSREEFPYAIRQVSEIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG 494

Query: 466 LVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           L+ +  +     F  L+DI G ED  G MDFKVAGT   ITA+Q+D K
Sbjct: 495 LMSEPGEDGQTHFATLTDILGAEDAFGDMDFKVAGTKEFITALQLDTK 542


>gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
 gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
          Length = 734

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/684 (34%), Positives = 378/684 (55%), Gaps = 48/684 (7%)

Query: 22  RIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + A  +D +V+   G +V+L +V  D      +DF PL+V Y E+ YA+GKIP G+L++E
Sbjct: 47  KYATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIPQGFLKKE 106

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +P++NEILISR+IDRS+RPLF K Y    Q+ I VM +D +      +M  AS  L LS
Sbjct: 107 GKPSDNEILISRLIDRSLRPLFPKDYPYPVQITILVMSYDNKIDICQKAMNLASICLYLS 166

Query: 142 GLPF--EGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELE------- 191
            +P   +G + G +V   + ++ L   L D  +  LDLFVSG  + V M+E++       
Sbjct: 167 SIPLTQKGILNGIRVMRRDDEFSLCDDLNDLLESKLDLFVSGINNNVSMIEMQSLKTTTQ 226

Query: 192 --------ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID--SKDFSKLE 241
                   AN++S++ +L+AI       + +     K  +    E    +  +K    L+
Sbjct: 227 NKDSIIENANEISKNDLLEAINLAKKHIETMSMLYMKHFEPFILEKREYEGSNKLDLALK 286

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           E + +   + ++       K  R  Q+  L K++     S+  +     +      I+ +
Sbjct: 287 ESLEKEHTDSIKECLCGMSKTERHTQLIALIKEI-----SQTHNLEREIVAKHVFAIKKE 341

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           ++R+++L++  R DGR    +R+IS +  LL +THGS+ F RG TQA+V  TLG++ D Q
Sbjct: 342 IMRSMILNEGKRADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQ 401

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             + +    ++  + HYNF P + GE   +GA SRRE+GHG LA +AI   +  T   P+
Sbjct: 402 TQEGILTQGKSKIIFHYNFPPFSVGEAYPIGASSRRELGHGNLALKAIESNVANT---PH 458

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDIS 480
           T+R+VSEI +S+GSSSMA+VCG+SLAL+ A + +   VAGIAMGL+ + ++ F ILSDI 
Sbjct: 459 TIRLVSEILQSNGSSSMASVCGASLALLGADIKMHNMVAGIAMGLIYESEERFAILSDIM 518

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G ED  G MDFK+AG + G +A+Q+D+KI G+SE+I+  +L+QA+ G LHIL+ M  V  
Sbjct: 519 GLEDFDGDMDFKIAGNEKGFSALQLDIKIHGLSESILNQSLEQAREGILHILSLMRNVEI 578

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSS 599
           +   +L    P+ E   +P   I  +IG GG+ IR I+ +    +NID D+G V I++++
Sbjct: 579 KPNYEL---LPQKESFCVPHTSIGEIIGQGGRTIRDIISRFQVSINIDKDEGIVHISANN 635

Query: 600 LAEIEAAREMIRSITDVPEVNKI-------YKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
              ++ A+  I  +    E  ++        +G V K ++ G  V      +G++    +
Sbjct: 636 KDSMQNAKNFILDLLRKKEKKELPYKVGECVEGVVSKQVESGFLVDLAQGGNGILRTISM 695

Query: 653 STERVAKTSDVVKEGDTVWVKLLD 676
             E        ++ G  + V++L 
Sbjct: 696 QEE--------LQIGQALSVRILS 711


>gi|226329676|ref|ZP_03805194.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
 gi|225202862|gb|EEG85216.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
          Length = 454

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/436 (51%), Positives = 312/436 (71%)

Query: 261 KYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSE 320
           K  R +QI+ ++ ++++   +E  + +E EI  +F  ++  +VR  +L  + R+DGR+ +
Sbjct: 8   KQERYEQIEAIRDEVIATLLAEDETLDEAEISEIFSGLEKNIVRARVLAGEPRIDGREKD 67

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            VR +  + GLL RTHGS+LF RG+TQA+V  TLGT  D Q +D + G   + F++HYNF
Sbjct: 68  MVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTDTFLLHYNF 127

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P + GE   MG+P RREIGHGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA+
Sbjct: 128 PPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMAS 187

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI + VAGIAMGLVK+GD+F++LSDI GDEDHLG MDFKVAG+ +G+
Sbjct: 188 VCGASLALMDAGVPIKESVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRNGV 247

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           +A+QMD+KI GI+  IM +AL QAK  RLHIL  M   +S+ R  + EF PR+  + I P
Sbjct: 248 SALQMDIKIEGITREIMQVALNQAKSARLHILGVMEDAISKPRADISEFAPRIHTIKINP 307

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++S  + + A   I  IT   EV 
Sbjct: 308 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATSGDQAKQAIARIEEITAEVEVG 367

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K SD ++ G  V VK+L+ D +
Sbjct: 368 RIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVSDYLEMGQEVPVKVLEIDRQ 427

Query: 681 GKIKLSMKVVDQNTGK 696
           G+I+LSMK    N  +
Sbjct: 428 GRIRLSMKEAQANQQE 443



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 28/215 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T      R  +       +  D F L  +Y 
Sbjct: 70  RALDIRTGLLPR-THGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTDTFLL--HYN 126

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDL 122
              Y+VG+           P   EI   R+  R +  +    + +    +V+  + + + 
Sbjct: 127 FPPYSVGETGMM-----GSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNG 181

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L ++   G +D  
Sbjct: 182 SSS--MASVCGASLALMDAGVPIKESVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFK 239

Query: 178 VSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNE 210
           V+G+++ V  ++++     ++ +++  A+    + 
Sbjct: 240 VAGSRNGVSALQMDIKIEGITREIMQVALNQAKSA 274


>gi|148691867|gb|EDL23814.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Mus
           musculus]
          Length = 551

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 172/492 (34%), Positives = 282/492 (57%), Gaps = 20/492 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 51  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 109

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 110 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 169

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 170 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 229

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                +++ +
Sbjct: 230 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVK 289

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L    + +  +K  R + ++ ++     +   +    ++ EI+  F  +  
Sbjct: 290 YTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 349

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 350 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 409

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 410 IKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 467

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 468 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGE 527

Query: 470 GDDFIILSDISG 481
            +D+ +L+DI  
Sbjct: 528 IEDYRLLTDILA 539


>gi|307202592|gb|EFN81927.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Harpegnathos saltator]
          Length = 618

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/602 (32%), Positives = 330/602 (54%), Gaps = 28/602 (4%)

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
           +  D    P V+++  AS AL +S +P+ GPV   ++  IN   ++NP   + Q G L++
Sbjct: 2   LAVDGLHDPDVIAINGASTALSISDIPWNGPVGAVRIGMINNDILINPTRRQMQDGILNI 61

Query: 177 FVSGTQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-- 233
            ++ T+ + ++M+E  AN++ E  +  AI  G  EC+ ++ +I KL K C K    ++  
Sbjct: 62  IITATKQNLIIMLEGSANEVLEQDLKKAIKLGVKECQHIVASIMKLQKACGKTKREVEIS 121

Query: 234 -SKDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
             ++   L   + ++ +  L+   S +  +K  R   I+DL+  ++   +++++  N   
Sbjct: 122 NQQEADNLTNLVKELSETKLQDIFSNYTHDKSSRDNAINDLRSSVIKTLTTDNADVNIKL 181

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           +  +F  I   V R+++ +K VR DGR    +RDIS QV L    HGS++F RG TQ + 
Sbjct: 182 VEKLFTKITKDVFRSLVFEKNVRCDGRSLSDIRDISCQVDLFNPLHGSAVFQRGQTQVMC 241

Query: 351 VVTLGTREDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            VTL + E    +D+    +SG +  +F +HY F P AT E+  +G   RRE+GHG LA 
Sbjct: 242 TVTLDSLESAFKMDAVSMLISGMKEKNFFLHYEFPPYATNEIGPVGRVGRREMGHGALAE 301

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           + + P++P    +P+T+R+ SE+ ES+GSSSMAT+CG SLAL+DAG+PIS   AG+A+GL
Sbjct: 302 KGLRPIIP--KDYPFTIRLTSEVLESNGSSSMATICGGSLALLDAGIPISSSAAGVAIGL 359

Query: 467 V-------KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +        D +D+ IL+DI G ED+ G MDFK+AGT  G TA+Q D+KI G+   I++ 
Sbjct: 360 LTKYDEAKTDIEDYKILTDILGIEDYFGDMDFKIAGTKRGFTALQADIKIPGVPLKIIME 419

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
            +Q A   +  I+  M+KV+   +    +  P +E + +P  Q    +G+GG  ++ I+ 
Sbjct: 420 CVQHASTAKTEIIKIMNKVIQTPQQIKKDKMPVLENLEVPIHQRGKFLGVGGTNLKKILL 479

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-----ITDVPEVNKIYKGQVVKVMDFG 634
           +TG  ++  D+    + + +   +  A+EMI++          E   IY  ++V++ + G
Sbjct: 480 ETGVHIHAHDENFYSMFAPNEDAMAEAKEMIKNILEKDREPTLEFGAIYTARIVEIRETG 539

Query: 635 AFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             V         L+  SQL   R+   S + +  G  + VK    D   G+I++S KV+ 
Sbjct: 540 VMVTLYSNMMPVLLPNSQLDQRRIHHPSALNLAVGQEIQVKYFGRDPVSGQIRISRKVLQ 599

Query: 692 QN 693
           + 
Sbjct: 600 EP 601



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 43/248 (17%)

Query: 28  DGAVLATYGETVVLATVVYDR---------------SLKDGQDFFPLTVNYQERTYAVGK 72
            G+ +   G+T V+ TV  D                 +K+   F     +Y+   YA  +
Sbjct: 227 HGSAVFQRGQTQVMCTVTLDSLESAFKMDAVSMLISGMKEKNFFL----HYEFPPYATNE 282

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           I         R    E+    + ++ +RP+  K Y    ++   V++ +  SS  + ++ 
Sbjct: 283 IGPV-----GRVGRREMGHGALAEKGLRPIIPKDYPFTIRLTSEVLESNGSSS--MATIC 335

Query: 133 AASAALMLSGLPFEGPVVGAQVDY----------INGQYVLNPRLDEDQ--GSLDLFVSG 180
             S AL+ +G+P      G  +            I    +L   L  +   G +D  ++G
Sbjct: 336 GGSLALLDAGIPISSSAAGVAIGLLTKYDEAKTDIEDYKILTDILGIEDYFGDMDFKIAG 395

Query: 181 TQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---KMCAKEPIVIDSK 235
           T+     ++ +     +   ++++ +         +I+ ++K+    +   K+ + +   
Sbjct: 396 TKRGFTALQADIKIPGVPLKIIMECVQHASTAKTEIIKIMNKVIQTPQQIKKDKMPVLEN 455

Query: 236 DFSKLEEE 243
               + + 
Sbjct: 456 LEVPIHQR 463


>gi|12835817|dbj|BAB23374.1| unnamed protein product [Mus musculus]
          Length = 540

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 171/492 (34%), Positives = 281/492 (57%), Gaps = 20/492 (4%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG  +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ E+L SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            ++++  AS AL LS +P+ GPV   ++  I+G+ V+NP   E   S L+L V+G  +  
Sbjct: 166 DILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                +++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
               +  E L    + +  +K  R + ++ ++     +   +    ++ EI+  F  +  
Sbjct: 286 YTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F   AT E  ++   +RRE+GHG LA +A+ PV+P  
Sbjct: 406 IKSDQIITAINGVKDKNFMLHYEFPLYATNETGKVTGVNRRELGHGALAEKALCPVIP-- 463

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------D 469
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        +
Sbjct: 464 KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGE 523

Query: 470 GDDFIILSDISG 481
            +D+ +L+DI  
Sbjct: 524 IEDYRLLTDILA 535


>gi|309358906|emb|CAP33602.2| hypothetical protein CBG_15142 [Caenorhabditis briggsae AF16]
          Length = 802

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/627 (31%), Positives = 335/627 (53%), Gaps = 26/627 (4%)

Query: 3   DVHTVEIEWAGR-PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +V +++ G+  L+L+TG +AR +  AV+A+ G+  V+ATVV  +  +   +  PL V
Sbjct: 24  NERSVSVDFNGKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQV 83

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+    AVG+IP  +LRRE   ++NEILISR IDRSIRPL       ETQVI   +  D
Sbjct: 84  EYRPSASAVGRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPAN-SYETQVICKPLALD 142

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV--LNPRLDEDQ-GSLDLFV 178
             +   ++ + AAS+AL +S  PF GP+   +V       +  +NP  +E +  S+++ V
Sbjct: 143 ENADQIMLGINAASSALHISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNMIV 202

Query: 179 SGTQD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +  ++   +M+EL+  +   + + +A+       + +  A+ +L      E   +  K  
Sbjct: 203 AMRRNQKTVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELG---GIEKDELPEKTT 259

Query: 238 S-KLEEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
           + ++ E +  + +E +         +K  R ++I  + + ++   +     +   +I   
Sbjct: 260 TMEILEILEALARERIYYVMTDSTHDKISRDEEIKAIMEDVIG--TEALQPFPPADIYQC 317

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           +  +  KV+R   L   +R DGR     R I  QV + ++ HG S+F RG TQ +  VT 
Sbjct: 318 WSFLVKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTF 377

Query: 355 GTREDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPS--RREIGHGRLARRA 408
            +     + DS    L   ++  FM+HY F   AT ++    + S  RREIGHG LA +A
Sbjct: 378 DSPTAAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGVSASRSLNRREIGHGALAEKA 437

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           + P+ P    FPY +R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ 
Sbjct: 438 LKPLFPT--GFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLIS 495

Query: 469 DGDD----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           D  +    + +L+DI G ED+ G MDFK+AGT +G TA Q+D+K  G++   +  +L  A
Sbjct: 496 DEKEPETNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAA 555

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           + G  H+L +M+ +    R Q     P +E M I P +   +    G   + I  +TG K
Sbjct: 556 RAGIDHVLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVK 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIR 611
           ++++D+  + + + S  +++ A  M+ 
Sbjct: 616 ISVEDESNISLLAPSQEKLQKALSMMN 642


>gi|332017453|gb|EGI58176.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Acromyrmex echinatior]
          Length = 616

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/603 (34%), Positives = 327/603 (54%), Gaps = 28/603 (4%)

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDL 176
           +  D  + P V+++  ASAAL +S +P+ GPV   ++  I+ + ++NP   + Q S L+L
Sbjct: 2   LAVDGMNDPDVIAINGASAALSVSDIPWNGPVGAVRLGMIDNEVIINPTRRQIQDSMLNL 61

Query: 177 -FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
              +  Q+ ++M+E  AN++ E  +  AI  G  EC+ ++ AI+KL K C K    I++ 
Sbjct: 62  IVTAAKQNLIIMLEGSANEILEPNLKKAIKQGVKECQNIVAAITKLQKTCGKLKRKIETT 121

Query: 236 DFSK---LEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
           +  +   L+  + ++ +E L+   S    +K  R   ++DL+  ++    +++   +   
Sbjct: 122 EQQEDDNLKSSVKELSEEKLQDIFSNHTHDKISRDMAVNDLRNSVIETLRNDNVDLDVKL 181

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
              +F  I   V RT++L+K VR DGR    +RDIS QV L    HGS++F RG TQ + 
Sbjct: 182 AEKIFGKIVKDVFRTLILEKDVRCDGRSPSHLRDISCQVDLFNPLHGSAVFQRGQTQVMC 241

Query: 351 VVTLGTREDEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR 406
            VTL + E+   +D+    +SG +  +F +HY F P AT E        RRE+GHG LA 
Sbjct: 242 TVTLDSLENALKMDATSMLISGVKEKNFFLHYEFPPYATNETGNSTRVGRRELGHGALAE 301

Query: 407 RAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +A+ PVLP    +P+T+R+ SE+ ES+GSSSMATVCG SLAL DAG+PIS   AG+A GL
Sbjct: 302 KALRPVLP--KDYPFTIRLTSEVLESNGSSSMATVCGGSLALFDAGIPISSAAAGVAFGL 359

Query: 467 VKDG-------DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           V          +D+ IL+DI G ED+LG MDFK+AGT  G TA Q D+KI GI   I++ 
Sbjct: 360 VTKYNETNTQIEDYKILTDILGIEDYLGDMDFKIAGTKGGFTAFQADIKIPGIPLKIIME 419

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
            L +    +L I+  M+KV+   R    +  P V+ + +P  Q    +G+GG  ++ I  
Sbjct: 420 CLDKTTNAKLEIIKIMNKVIRAPRQTKKDKMPVVDNLEVPVYQRGKFLGVGGMNLKKIFL 479

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-----ITDVPEVNKIYKGQVVKVMDFG 634
           +TG  +   D+ T  I + +   +  A+E+I          + E   IY  ++V++ + G
Sbjct: 480 ETGVHIYPYDENTYSIFAPNEDAMTEAKEIIEGILQKDREPILEFGAIYTARIVEIREVG 539

Query: 635 AFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             V         L+  SQL   ++   S + ++ G  + VK    D   G+I++S KV+ 
Sbjct: 540 IMVTLYSNMIPVLLPNSQLDQRKIHHPSALGLEVGQEIQVKYFGRDPVSGQIRISRKVLQ 599

Query: 692 QNT 694
             T
Sbjct: 600 APT 602



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 43/248 (17%)

Query: 28  DGAVLATYGETVVLATVVYDR---------------SLKDGQDFFPLTVNYQERTYAVGK 72
            G+ +   G+T V+ TV  D                 +K+   F     +Y+   YA  +
Sbjct: 227 HGSAVFQRGQTQVMCTVTLDSLENALKMDATSMLISGVKEKNFFL----HYEFPPYATNE 282

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
                    +R    E+    + ++++RP+  K Y    ++   V++ +  SS  + ++ 
Sbjct: 283 TGNS-----TRVGRRELGHGALAEKALRPVLPKDYPFTIRLTSEVLESNGSSS--MATVC 335

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ------------GSLDLFVSG 180
             S AL  +G+P      G     +      N ++++ +            G +D  ++G
Sbjct: 336 GGSLALFDAGIPISSAAAGVAFGLVTKYNETNTQIEDYKILTDILGIEDYLGDMDFKIAG 395

Query: 181 TQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---KMCAKEPIVIDSK 235
           T+      + +     +   ++++ +    N    +I+ ++K+    +   K+ + +   
Sbjct: 396 TKGGFTAFQADIKIPGIPLKIIMECLDKTTNAKLEIIKIMNKVIRAPRQTKKDKMPVVDN 455

Query: 236 DFSKLEEE 243
               + + 
Sbjct: 456 LEVPVYQR 463


>gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 554

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 235/460 (51%), Positives = 322/460 (70%), Gaps = 5/460 (1%)

Query: 243 EMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN----EGEIVSVFEDI 298
           ++    KED  ++     K  R  ++++L+ K++S  + ++S+ +    + +IV+  +  
Sbjct: 3   DIESSYKEDFSLAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDIVTALKTF 62

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  +VR+ ++D   R+DGR  + +RDI  +V +L + HGS+LF RG+TQA+VV  LGT +
Sbjct: 63  ERSLVRSKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQ 122

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           DEQ VD L G +R +F++HYNF P A GE + + AP RREIGHG+LA RAI  VLP+ + 
Sbjct: 123 DEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRYVLPEKSD 182

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITESDGSSSMATVCG+SLALMD GVPI  PVAGIAMGL+K+ D FIILSD
Sbjct: 183 FPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSD 242

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I GDEDHLG MDFKVAGT  G+TA+QMDMKI GI  +I+  AL QAK GR+HIL++M+ V
Sbjct: 243 ILGDEDHLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHILSKMNAV 302

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           + ESR ++    PR+E + I  D+IRNVIG GGK IR I E+TGAK+ I  DGTV I + 
Sbjct: 303 IQESRNRIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDGTVMIYAV 362

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   +E A+ MI  I   PE+ K+++G VV++M FGAFV F G + GLVHIS++  E ++
Sbjct: 363 NNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIRNEHIS 422

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
               V+   D V V ++  D R  I+LSM+ VDQ +G+PI
Sbjct: 423 SVGSVISLNDKVKVLVIGID-REHIQLSMRRVDQESGEPI 461



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 26/214 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL--------TVNYQE 65
           R +++E   + + + G+ L T G T  L  V    + +D Q    L         ++Y  
Sbjct: 87  RDIEIEVDVLPK-AHGSALFTRGNTQALV-VTALGTPQDEQIVDDLDGDRRENFLLHYNF 144

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLE 123
             YAVG+     LR    P   EI   ++  R+IR +  +   +    +V+  + + D  
Sbjct: 145 PPYAVGE--SAALR---APGRREIGHGKLAWRAIRYVLPEKSDFPYTIRVVSEITESDGS 199

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQGSLDLFV 178
           SS  + ++  AS ALM +G+P + PV G  +  I  + ++++   +   ++  G +D  V
Sbjct: 200 SS--MATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSDILGDEDHLGDMDFKV 257

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECK 212
           +GT + V  ++++      D  +D I     + K
Sbjct: 258 AGTAEGVTALQMDMKISGID--IDIIEKALLQAK 289


>gi|12001940|gb|AAG43113.1|AF058952_1 polynucleotide phosphorylase A [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 425

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 163/425 (38%), Positives = 252/425 (59%), Gaps = 11/425 (2%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T  IE+AGR L +ETG IA Q +GAV+  YG+T VL      +      DFFPL VNY
Sbjct: 3   KETFSIEFAGRTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGKMA--TGDFFPLQVNY 60

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE+RP+ +  L +R+IDR IRP+F++ ++NE QVI  V+ +D  
Sbjct: 61  EEKMYAAGKFPGGFNKREARPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEN 120

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQ 182
           +S  V +M  +S AL +S +PF+GP+ G +V YI+G+Y++NP + E +  SL+L V+G  
Sbjct: 121 ASGRVAAMFGSSLALAISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLELSVAGNI 180

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDFSKLE 241
           +A+ MVE  A +LSE+V+L A++ GHN  K +IE  +++     KE   ++       L+
Sbjct: 181 NAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAKVGKEKAEVELLHVDEDLK 240

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFE 296
            E+      DL+ +  + EK  R      +K+ ++S +S+++ +         ++  + E
Sbjct: 241 AEVIAAYNSDLQKAVQVEEKLAREAATKAVKEAIISVYSAKYENDENLSIILRDLAEILE 300

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTL 354
            ++   VR ++ + K+R DGR  + +R + A++    R  THG+ LF RG TQA+  +TL
Sbjct: 301 GMEHAEVRRLITEDKIRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTL 360

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L+   +  FM HYNF   + GE  R GAP RREIGHG L  RA+  VLP
Sbjct: 361 APMNEAQIIDGLNDEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALEQVLP 420

Query: 415 QTAQF 419
              +F
Sbjct: 421 SLEEF 425



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 105/249 (42%), Gaps = 21/249 (8%)

Query: 323 RDISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLG-TREDEQYVDSLSGTQRNDFMMHYNF 380
           R ++ + G +  + +G+ +   GDT  +   T+G     + +   ++  ++      Y  
Sbjct: 13  RTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEK-----MYAA 67

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE--SDGSSSM 438
                G   R   PS       RL  R I P+      F   +++++ +     + S  +
Sbjct: 68  GKFPGGFNKREARPSTDATLTARLIDRPIRPMF--AEGFRNEVQVINTVLSYDENASGRV 125

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
           A + GSSLAL  + +P   P+AG+ +  +     +II   ++  E     ++  VAG  +
Sbjct: 126 AAMFGSSLALAISDIPFDGPIAGVEVAYI--DGKYIINPTVA--EKEASSLELSVAGNIN 181

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  ++   K   +SE +M+ AL          + E+ +  +E   ++G+    VE++ +
Sbjct: 182 AINMVESGAKE--LSEEVMLGALLAGHNA----VKELIEFQNEIVAKVGKEKAEVELLHV 235

Query: 559 PPDQIRNVI 567
             D    VI
Sbjct: 236 DEDLKAEVI 244


>gi|255030484|ref|ZP_05302435.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           LO28]
          Length = 420

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/420 (45%), Positives = 269/420 (64%), Gaps = 5/420 (1%)

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFV 178
            D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V
Sbjct: 1   MDQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTV 60

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID-SKDF 237
           +GT DA+ MVE  A ++SE+ +L+AI+FGH E K + E   ++     KE   I+     
Sbjct: 61  AGTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSD 120

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSS---EHSSWNEGEIVSV 294
            +LE E+    +  ++ +    EK  R   I+++K++++  + +   E+ S    E+  +
Sbjct: 121 PELEAEVKAASEGKMKTAIKTEEKKAREAAIEEVKEEILESYKAKELENESEILSEVAHI 180

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
            E I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL
Sbjct: 181 LEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTL 240

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
               + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P
Sbjct: 241 APLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIP 300

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ 
Sbjct: 301 SEEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYT 360

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ILSDI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  
Sbjct: 361 ILSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEH 420


>gi|295103372|emb|CBL00916.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Faecalibacterium prausnitzii SL3/3]
          Length = 441

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/420 (37%), Positives = 235/420 (55%), Gaps = 6/420 (1%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E   AGRP K+E G++   S+ + L  YGET V+  VV     ++G DFFPL V 
Sbjct: 14  NFKVYETMLAGRPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPREGVDFFPLNVE 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+ YA G+IPG ++RRE RP E  IL SR++DR +RPLF K  +N+  + + VM  D 
Sbjct: 74  YEEKLYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT 181
           + SP +  M+ AS    +S +P+ GP+ G QV  +NG+ VLNP  ++ +   L L V+ T
Sbjct: 134 DCSPEIAGMIGASLVTAVSDIPWNGPIGGVQVGLVNGEIVLNPTQEQRKVSDLALTVAAT 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
            D ++M+E  AN++ ED +L AI   H E K +IE I+K+     K  I          +
Sbjct: 194 MDKIVMIEAGANEVDEDTMLTAIKTAHVEIKKIIEFINKIVAERGKPKIDFQVVGLDMDV 253

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              +     +D + +    +K VR   +  +  K+    + E+   +  ++  V   +Q 
Sbjct: 254 FHAIQNKYLDDFKAAMDTDDKNVRDAALLPIMDKI----AEEYPDLSAADLDLVSYKMQK 309

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            VVR  +LD+  R+DGR    +R ++A+VG+L R HGS +F RG TQ +   TLG  +D 
Sbjct: 310 FVVRRWLLDEGKRVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDN 369

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D L+  Q   ++ HYNF P + GE     +P RREIGHG LA RA+ PVLP   +FP
Sbjct: 370 QLMDDLTDEQTKRYIHHYNFPPYSVGEARAPRSPGRREIGHGALAERALVPVLPSLEEFP 429



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 19/225 (8%)

Query: 323 RDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R    ++G +    + S+L   G+T  +  V +  +  E       G       + Y   
Sbjct: 25  RPFKVEMGKMCGLSNASALIRYGETCVMCNVVMSPKPRE-------GVDFFPLNVEYEEK 77

Query: 382 PCATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
             A G +      R G P  R I   R+  R + P+ P+  +    + +     + D S 
Sbjct: 78  LYAAGRIPGSFMRREGRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCSP 137

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
            +A + G+SL    + +P + P+ G+ +GLV       I+ + + ++  +  +   VA T
Sbjct: 138 EIAGMIGASLVTAVSDIPWNGPIGGVQVGLVNGE----IVLNPTQEQRKVSDLALTVAAT 193

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
              I  ++       + E+ M+ A++ A      I+  ++K+++E
Sbjct: 194 MDKIVMIEAGANE--VDEDTMLTAIKTAHVEIKKIIEFINKIVAE 236


>gi|18250193|gb|AAK73855.2|AC092690_1 Hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
          Length = 745

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 205/647 (31%), Positives = 344/647 (53%), Gaps = 27/647 (4%)

Query: 5   HTVEIEWAGRP-LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            +V +++ G+  ++L+ G +AR +   V+A++G+  V+ATVV  +S +      PL V Y
Sbjct: 26  QSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDGSGVPLQVEY 85

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +    A+G+IP  +LRRE   ++NEILISR IDRSIRPL       ETQ+I   +  D  
Sbjct: 86  RPSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLP-GNSYETQIICKPLALDEN 144

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDED-QGSLDLFVSGT 181
           +   ++ + AAS AL +S   + GP+   +V     G + +NP  +E  + SL+L V+  
Sbjct: 145 ADQIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMR 204

Query: 182 Q-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           + +  +M+EL+  + S + +  A+         + EA+ +L    A+    + S+DFS L
Sbjct: 205 KHEKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQL---TAEPKDELASEDFSGL 261

Query: 241 EEEMSQMIKEDLR--VSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           E  + +  +E +   ++    +K  R  +I  + +++ +       +  +  I   +  +
Sbjct: 262 ERLLEETARERIYYVITDAGHDKISRDMEIKAIFEEICAE--KAFQTCEKDAIYRTYSTL 319

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             KV+R   L   +R DGR  +  R I+  V + ++ HG S+F RG TQ +  VT  +  
Sbjct: 320 VKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPA 379

Query: 359 DEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
              + DS    L   ++  FM+HY F   A  E     + +RREIGHG LA +++  + P
Sbjct: 380 AAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLFP 439

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG---- 470
             A FPY  R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ D     
Sbjct: 440 --ADFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAEPE 497

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +L+DI G ED+ G MDFKVAGT  G TA Q+D+K GG++   +  +LQ A+ G  H
Sbjct: 498 TKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAARAGIDH 557

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +L +MS +    R Q     P ++ M I P +   +    G   + I  +TG K++ +D+
Sbjct: 558 VLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVKISAEDE 617

Query: 591 GTVKIASSSLAEIEAAREMIR-----SITDVPEVNKIYKGQVVKVMD 632
             + + +    +++ A +M+      + T       I + ++V+V++
Sbjct: 618 AHISLLAQDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQAEIVEVVN 664


>gi|313608969|gb|EFR84717.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL F2-208]
          Length = 424

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/400 (49%), Positives = 266/400 (66%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I+   +R ++   K+R DGR    +R +S++VG+L R HGS LF RG TQA+ V TL   
Sbjct: 3   IEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPL 62

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
            + Q +D L   +   FM HYNF   + GE     AP RREIGHG L  RA+  V+P   
Sbjct: 63  REHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEE 122

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +FPYT+R+VSE+ ES+GSSS A++CGS+LA++DAGVPI  PVAGIAMGLVK GDD+ ILS
Sbjct: 123 EFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILS 182

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           DI G EDH G MDFKVAGT  GITA+QMD+KI G+S  I+  AL QAK GRLHIL  ++ 
Sbjct: 183 DIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTS 242

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            +S  R +L  + P++  + I P++I++VIG GGK I  I+++TG K++I+ DGTV IAS
Sbjct: 243 TISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIAS 302

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              A    A  +I  I    EV ++Y G+V ++  FGAFV      DGLVHIS+L+ ERV
Sbjct: 303 QDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERV 362

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 363 GKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 402



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 133/308 (43%), Gaps = 32/308 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV--------NYQE 65
           RPL  E G + R   G+ L T G+T  L+ V     L++ Q    L          +Y  
Sbjct: 28  RPLSSEVGMLPR-VHGSGLFTRGQTQALS-VCTLAPLREHQIIDGLGTEEYKRFMHHYNF 85

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLE 123
             ++VG+      RR   P   EI    + +R+++ +    + +    +++  V++ +  
Sbjct: 86  PQFSVGETGP---RR--APGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGS 140

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLFV 178
           SS    S+  ++ A++ +G+P + PV G  +  +   +   +L+     +   G +D  V
Sbjct: 141 SS--QASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQGMEDHFGDMDFKV 198

Query: 179 SGTQDAVLMVELE--ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
           +GT+D +  ++++   + LS  ++ +A+         ++E ++       +E      K 
Sbjct: 199 AGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPKI 258

Query: 237 FSKL--EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSV 294
            +     E++  +I    +    I +      +ID +++    Y +S+  + N   I ++
Sbjct: 259 ITLNIKPEKIKDVIGPGGKQINAIID--ETGVKID-IEQDGTVYIASQDQAMNRKAI-AI 314

Query: 295 FEDIQAKV 302
            EDI  +V
Sbjct: 315 IEDIVREV 322


>gi|119620491|gb|EAX00086.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Homo
           sapiens]
          Length = 500

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/456 (34%), Positives = 263/456 (57%), Gaps = 13/456 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           V ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+++
Sbjct: 47  VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQV+ N++  D  + P
Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGT-QDA 184
            V+++  AS AL LS +P+ GPV   ++  I+G+YV+NP   E   S L+L V+G  +  
Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G    + +I+ I +L K                 ++ +
Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++  E L    + +  +K  R + ++ ++         +    +  EI+  F  +  
Sbjct: 286 YTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAK 345

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-- 358
           +V R+++L++  R DGRD  ++R++S +V + +  HGS+LF RG TQ +  VT  + E  
Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405

Query: 359 --DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              +Q + +++G +  +FM+HY F P AT E+ ++   +RRE+GHG LA +A++PV+P+ 
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
             FP+T+R+ SE+ ES+GSSSMA+ CG SLALMD+G
Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSG 499



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 13/191 (6%)

Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R +    G L R   GS++   GDT  +V     T+        L    R          
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMA 439
              T  + R    S +EI   R+  R+I P+ P  A + Y  +++  +   DG     + 
Sbjct: 114 ---TNYLRREIGTSDKEILTSRIIDRSIRPLFP--AGYFYDTQVLCNLLAVDGVNEPDVL 168

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS- 498
            + G+S+AL  + +P + PV  + +G++    D   + + +  E     ++  VAG    
Sbjct: 169 AINGASVALSLSDIPWNGPVGAVRIGII----DGEYVVNPTRKEMSSSTLNLVVAGAPKS 224

Query: 499 GITAMQMDMKI 509
            I  ++   + 
Sbjct: 225 QIVMLEASAEN 235


>gi|153864819|ref|ZP_01997588.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
 gi|152145686|gb|EDN72412.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
          Length = 416

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 235/414 (56%), Positives = 305/414 (73%)

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
             S+E   W+E +++ V E ++  +VR+ ++  K R+DGRD+ TVR I+ + G+L RTHG
Sbjct: 2   EMSTETEDWSENQVLQVIEKLEKNIVRSDIIAGKPRIDGRDTRTVRPITIRTGVLPRTHG 61

Query: 338 SSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR 397
           S+LF RG+TQA+VV TLGT  D Q +D+L G  +  F++HYNF P   GEV R+G P RR
Sbjct: 62  SALFTRGETQALVVTTLGTERDAQIIDALEGEYKEGFLLHYNFPPYCVGEVGRIGTPKRR 121

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E+GHGRLARR +  V+P +  FPY++R+VSEITES+GSSSMATVCG+SLALMDA VPI  
Sbjct: 122 ELGHGRLARRGVQAVMPTSEVFPYSVRLVSEITESNGSSSMATVCGASLALMDAAVPIKA 181

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           PVAGIAMGL+K+ + F++L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+  IM
Sbjct: 182 PVAGIAMGLIKEDEQFVVLTDIMGDEDHLGDMDFKVAGTLEGVTALQMDIKIDGITREIM 241

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
             AL QAK GRLHIL+ M K L++ R ++ E  PR+    I PD+IR VIG GG  IR I
Sbjct: 242 ETALAQAKDGRLHILSVMDKALAKPRSEMSEHAPRIITFKIKPDKIREVIGKGGATIRAI 301

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            EQTGA V+I+D+G +KIAS  L   E AR  I  IT   EV K+Y+G+VVK+MDFGAFV
Sbjct: 302 TEQTGAMVDINDEGVIKIASVDLIAGEKARRRIEEITSDIEVGKVYEGKVVKLMDFGAFV 361

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
                +DGL+HISQ+  ERV K SD +KEG+TV VK+L+ D +G+I+LSMK V+
Sbjct: 362 TILPGKDGLLHISQICEERVEKVSDKLKEGETVRVKVLEVDKQGRIRLSMKAVN 415



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 16/208 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+ + TG + R + G+ L T GET  L         +D Q    L   Y+E     Y  
Sbjct: 47  RPITIRTGVLPR-THGSALFTRGETQALVVTTLGTE-RDAQIIDALEGEYKEGFLLHYNF 104

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G + R   P   E+   R+  R ++ +    + +    +++  + + +  SS  +
Sbjct: 105 PPYCVGEVGRIGTPKRRELGHGRLARRGVQAVMPTSEVFPYSVRLVSEITESNGSSS--M 162

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQGSLDLFVSGTQD 183
            ++  AS ALM + +P + PV G  +  I  + Q+V+   +   ++  G +D  V+GT +
Sbjct: 163 ATVCGASLALMDAAVPIKAPVAGIAMGLIKEDEQFVVLTDIMGDEDHLGDMDFKVAGTLE 222

Query: 184 AVLMVELE--ANQLSEDVVLDAIIFGHN 209
            V  ++++   + ++ +++  A+    +
Sbjct: 223 GVTALQMDIKIDGITREIMETALAQAKD 250


>gi|291234442|ref|XP_002737157.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 560

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/518 (35%), Positives = 293/518 (56%), Gaps = 39/518 (7%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           ++I+   +PLKL TG++AR +DG  +A  GET V+ T +   +      F PLTV+++++
Sbjct: 53  IDIQIGDKPLKLSTGKLARFADGCAIAQIGETSVMVTAISKTTPSASSSFLPLTVDFRQK 112

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
             A G+IP  +LRRE  PT+ EIL SR+IDRSIRPLF + Y  ++Q+I N +  D  + P
Sbjct: 113 AAAAGRIPMNHLRRERGPTDFEILTSRVIDRSIRPLFPQGYVFDSQIICNCLAVDGINDP 172

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT-QDA 184
            ++S+ AASAAL LS +P+ GPV   ++  I+G++++NP   E  +  L+L V+G+ + +
Sbjct: 173 DILSINAASAALSLSDIPWNGPVGAVRMGLIDGKFIVNPTRLELIKSKLNLIVTGSKKSS 232

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS--KDFSKLEE 242
           ++M+E  A  + +     AI  G  E   +I  I  L K   K+  V+++       + +
Sbjct: 233 IVMLEGSAENILQPEFCKAIKLGIKETNQIINGIESLCKTHGKKKRVVENMLTIPEDILK 292

Query: 243 EMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
             + + K+ +    S +   K+ R   I +++ + +   ++             F  +  
Sbjct: 293 AATNIAKDKIYEVFSDYSHHKFSRDNAISNIRTECIDRLTAMFPENEVFLFNEAFNFLVK 352

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
            V R ++LD+  R DGR    +RDIS +V + +  HGS+LF RG TQ +  VT  + +  
Sbjct: 353 DVFRNIILDEDRRCDGRSLTALRDISCEVDMYKPLHGSALFQRGQTQVLCTVTFDSIDSA 412

Query: 361 QYVDSL----SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
              D+L    SG +  +F++HY F P AT EV RM A SRRE+GHG LA +A+ PV+P+ 
Sbjct: 413 LKGDALSEIISGIKEKNFLLHYEFPPFATNEVGRMFA-SRRELGHGALAEKALKPVIPKK 471

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD----- 471
             FP+T+R+ SE+ ES+G                  VPI+  VAG+A+GLV   +     
Sbjct: 472 --FPFTIRLTSEVLESNG------------------VPITAAVAGVAIGLVAKTEDDNRS 511

Query: 472 ---DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
              D+ +++DI G ED++G MDFK+AGT  GITA+Q+ 
Sbjct: 512 NITDYRLMTDILGIEDYMGDMDFKMAGTKKGITALQVT 549



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 65/189 (34%), Gaps = 50/189 (26%)

Query: 28  DGAVLATYGETVVLATVVYDR-----------SLKDGQDFFPLTVNYQERTYAVGKIPGG 76
            G+ L   G+T VL TV +D             +  G       ++Y+   +A  ++   
Sbjct: 388 HGSALFQRGQTQVLCTVTFDSIDSALKGDALSEIISGIKEKNFLLHYEFPPFATNEVGRM 447

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           +       +  E+    + +++++P+  K +    ++   V++ +               
Sbjct: 448 F------ASRRELGHGALAEKALKPVIPKKFPFTIRLTSEVLESN--------------- 486

Query: 137 ALMLSGLPFEGPVVGAQVDYI---NGQYVLNPR----------LDEDQGSLDLFVSGTQD 183
                G+P    V G  +  +         N            +++  G +D  ++GT+ 
Sbjct: 487 -----GVPITAAVAGVAIGLVAKTEDDNRSNITDYRLMTDILGIEDYMGDMDFKMAGTKK 541

Query: 184 AVLMVELEA 192
            +  +++  
Sbjct: 542 GITALQVTC 550


>gi|308461535|ref|XP_003093059.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
 gi|308251715|gb|EFO95667.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
          Length = 712

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/708 (27%), Positives = 353/708 (49%), Gaps = 57/708 (8%)

Query: 5   HTVEIEWAGRP-LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
            +V +++ G+  L+L++G IAR +  AV+A+ G+  V+ATVV  +  +   +  PL V Y
Sbjct: 26  QSVSVDFDGKNALELKSGHIARFASSAVVASSGDNAVMATVVQKKEKQGDGNGVPLQVEY 85

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           ++    + K+                                      QVI   +  D  
Sbjct: 86  RKNFKKISKLFFRNFFFHF-----------------------------QVICKPLALDEN 116

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDED-QGSLDLFVSGT 181
           +   ++ + AAS AL +S  PF GP+   +V     G + +NP  +E  + SLD+ ++  
Sbjct: 117 ADQIMLGINAASTALHISSAPFSGPLAALRVTMSPRGTFQINPTQEELREASLDVIIAMK 176

Query: 182 QD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           ++   +M+EL+  ++S + +  A        + +  A+ K+A     E  V+ +++  K+
Sbjct: 177 KNQKTVMIELDGKEVSAEHLEQACHVAFENVEKLHVAMEKMA--VGVEKDVLPTRNLGKI 234

Query: 241 EEEMSQMIKEDLRVSCF--IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           E  + +++ E +         +K  R ++I  + + +V   S E  S    +I   +  +
Sbjct: 235 ENILRELVTERVYYVMTDSTHDKISRDQEIQKIYRDVVE--SKELQSHGSQDIYPCYSAL 292

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +++R  +L+  +R DGR     R I+ QV + ++ HG S+F RG TQ +  VT  +  
Sbjct: 293 VKQILRETVLNTGIRCDGRKITDFRPITIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPA 352

Query: 359 DEQYVDS----LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
              + DS    L   ++  FM+HY F   A  EV    + +RREIGHG LA +A+  + P
Sbjct: 353 AAFHPDSVAQLLGSQRKKSFMLHYEFPSFAINEVGISRSSNRREIGHGALAEKALKNLFP 412

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-- 472
               FPY  R+  ++ ES+GSSSMA+VCG SLAL DAGVP+    AG+A+GL+ D ++  
Sbjct: 413 --KDFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKSAAAGVAIGLITDQNEPD 470

Query: 473 --FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
             + +L+DI G ED+ G MDFK+AGT +G TA Q+D+K  G++   +  +LQ A+ G  H
Sbjct: 471 SKYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLKESLQAARSGIDH 530

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +L++M+ +    R +     P ++ + I P +   +    G   + I  +TG K++ +D+
Sbjct: 531 VLSKMNIMRDRPREEFKTTVPIIQSIRIEPHKRVTLFRNNGYNCKLIEAETGVKISAEDE 590

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARD- 644
             + + + +  +++ A +M+  + +           I + ++V+++D G FV   G+   
Sbjct: 591 NNISLLAQNKQKLQKAMDMMGEVLETHGNLDFAFGSIVQAEIVEIVDRGVFVTLPGSSQR 650

Query: 645 GLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             ++ + LS   +     + +K GD +       D+  G I+LS + +
Sbjct: 651 IFMNNNHLSLNPIRHPEVLGLKVGDKMSTTWFGRDEHTGNIRLSRRTL 698


>gi|306836337|ref|ZP_07469316.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
 gi|304567772|gb|EFM43358.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
          Length = 493

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/468 (36%), Positives = 257/468 (54%), Gaps = 38/468 (8%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFFPLTVNYQERTY 68
           ++  R ++ ETG++ARQ+DG+V     + T++LAT       ++  DFFPLTV+ +ER Y
Sbjct: 28  DFGTRTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERMY 87

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           A GKIPG + RRE RP+   IL  R+IDR +RP F K  +NE QV+I V+  D E    V
Sbjct: 88  AAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYYDV 147

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI------NGQYVLNPRLDEDQGSL-DLFVSGT 181
           V++  ASAA  LSGLP  G V G ++  I       GQ+V  P  ++ + +L ++ V+G 
Sbjct: 148 VAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHERALFEMVVAGR 207

Query: 182 --------QDAVLMVELEANQLSEDVVLD--------AIIFGHNECKPVI----EAISKL 221
                     A++MVE  A     + + D        A+  G    KP I    EA + L
Sbjct: 208 IVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIKTLCEAQNGL 267

Query: 222 AKMCAKE----PIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDD----LKK 273
           A+  AKE    P+    +D   +   + +   + L     IP K  R +  +     +++
Sbjct: 268 AERTAKETQEFPLFPAYED--DVFAAVEKAASKKLESLLTIPGKQERDEATNAHMEQVEQ 325

Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQ 333
            ++  F+    +    +I + + ++  K+VR  +L    R+DGR    +RD+S +V L+ 
Sbjct: 326 DLLPQFADLEEAVASKQIRAAYNEVMKKIVRRKILTDGFRIDGRGLTDIRDLSVEVDLVP 385

Query: 334 RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA 393
           R HGSSLF RG+TQ + V TL   + EQ +DSL+  +   +M HYNF P +TGE  R+G+
Sbjct: 386 RAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIESKRYMHHYNFPPFSTGETGRVGS 445

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P RREIGHG LA RA+ PV+P    FPY +R VSE   S+GS+SM +V
Sbjct: 446 PKRREIGHGALAERALLPVIPSREDFPYAIRQVSEALGSNGSTSMGSV 493



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 15/195 (7%)

Query: 314 MDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDS--LSGTQ 370
           +D  D  T R +  + G L R   GS      D   ++  T  + +  +  D   L+   
Sbjct: 24  LDNGDFGT-RTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDV 82

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                  Y           R G PS   I   RL  R + P   +  +    +++V  + 
Sbjct: 83  EERM---YAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNE--VQVVITVL 137

Query: 431 ESDGSSS--MATVCGSSLALMDAGVPISKPVAGIAMGLVKDG----DDFIILSDISGDED 484
             D      +  + G+S A   +G+P+S  V G+ M L+ D       ++   +    E 
Sbjct: 138 SQDPEEYYDVVAINGASAATQLSGLPVSGAVGGVRMALIADDKHPEGQWVAFPNHEQHER 197

Query: 485 HLGHMDFKVAGTDSG 499
            L  M         G
Sbjct: 198 ALFEMVVAGRIVTKG 212


>gi|289607403|emb|CBI60808.1| unnamed protein product [Sordaria macrospora]
          Length = 368

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 178/386 (46%), Positives = 248/386 (64%), Gaps = 20/386 (5%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MFD+    ++  G+ L LETGR+ARQ+DGAV+AT GETVVL  V   RS+K+GQDFFPLT
Sbjct: 1   MFDIKKSTMDLGGKTLTLETGRVARQADGAVIATLGETVVLCAVTAARSVKEGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+  A G+IPGG+ +RE   TE E L+SR+IDR IRPLF + + NE  VI  V+ +
Sbjct: 61  VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D E+ P +V+M+AASAAL +SG+PF GP+   +V YI+G+YVLNP LD+  +G LDL V+
Sbjct: 121 DGENEPDIVAMIAASAALTISGVPFMGPIGAGRVGYIDGEYVLNPTLDQVKEGDLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFS 238
            T DAV+MVE EA +LSE+V+L A++F H+  K +++ I  LA+  AK+P  +    D S
Sbjct: 181 ATGDAVMMVESEAKELSEEVMLGAVVFAHDASKKIVDCIIDLAEQAAKDPWELAPVADQS 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
             ++++  +I +DL  +  + +K  R   I+D      +       S             
Sbjct: 241 AAKKKLKSLIGKDLTAAYKLTDKQARQNAIND------AALRHATPSPTS---------- 284

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             K +R  + D   R+DGRD++TVR I A V  L R HGS+LF RG+TQAI   TLGT++
Sbjct: 285 -RKAIRRSISD-GRRIDGRDTKTVRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKD 342

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCA 384
            EQ +D L+G     FM+HYNF P +
Sbjct: 343 AEQMIDGLNGLHYERFMLHYNFPPYS 368


>gi|308800758|ref|XP_003075160.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
           tauri]
 gi|116061714|emb|CAL52432.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
           tauri]
          Length = 620

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 202/597 (33%), Positives = 323/597 (54%), Gaps = 25/597 (4%)

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-----QYVLNPRLDEDQG 172
           M  D    P V+++  ASAALM S +P+ GPV   +V  I       + V++P  +  + 
Sbjct: 1   MASDGGEDPAVLAVNGASAALMASSIPWNGPVAAVRVAIIRDGSGEREIVVSPSDEVVES 60

Query: 173 S-LDLFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           S   LF +G     LM+E ++N+   L E ++ DA+   H   + ++ A  +LAK   K 
Sbjct: 61  SDFTLFYAGNDSRTLMIEAQSNKSGGLEESMLADALRVAHRAVRELLPAQIELAKEMGKP 120

Query: 229 PIVIDSKDF-SKLEEEMSQMIKEDLRVSC--FIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
              +      S+++E +   +K  L       I +K+ R +++ +L+ ++V+     +  
Sbjct: 121 KQELVPAAVTSEMKEAVYAAMKTRLLALYEEHIQDKHERGRKMAELQSEVVAELIEANPE 180

Query: 286 WNE--GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
           W E    + S +    ++V+R  + D   R+DGR    +R +    GL+   HGS+LF R
Sbjct: 181 WAESVDALGSAYFQTCSRVMRERIFDTDTRVDGRGLYDLRALDGVAGLMPIVHGSALFER 240

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G+TQA+  +TLG+ +D Q +D+L+G      ++HY+F   +  E    G  SRRE+GHG 
Sbjct: 241 GNTQALATITLGSLDDSQKLDNLTGPTSKRLILHYSFPSFSVNETGARGI-SRREVGHGA 299

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           LA +++  V P    FP+ +R+ +E  ES+GSSSMA VC  S+ALMDAGVPI + V  I+
Sbjct: 300 LAEKSLLGVFPDEESFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPIKEHVGAIS 359

Query: 464 MGLVKDGDD-------FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           +GL+ D D+       + ++ DI G ED LG MDFK+AGT +G+T +Q+D K  GI   I
Sbjct: 360 IGLIMDEDETTREVKRYKLMDDIMGLEDVLGDMDFKIAGTRTGVTGIQLDCKPMGIPLEI 419

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           ++ AL +A   R  +++ M + +   +  + +  PR    +IP   I  +IG  G  I+ 
Sbjct: 420 LIEALDRASAARQKVIDVMERAVKTPKTDVKDSAPRFGRASIPGSLIGKLIGPQGSNIKA 479

Query: 577 IVEQTGAKVNI-DDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFG 634
           + + TG+KV + +DDG + I   + A  +AA   I S+ + + EV K Y   V  VM FG
Sbjct: 480 LEKDTGSKVAVLNDDGDLAIFGPNKASYDAALAHIESMKNSIIEVGKTYVTTVKDVMPFG 539

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           A +      DGL+H+S+++ ER    +DV   GD V VK +  +   GKIK S K +
Sbjct: 540 AVLITSNGDDGLLHVSEIAHERTENVADVFSVGDVVEVKCVAREGPSGKIKWSRKAL 596



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 84/217 (38%), Gaps = 27/217 (12%)

Query: 28  DGAVLATYGETVVLATVV-YDRSLKDGQDFFP------LTVNYQERTYAVGKIPGGYLRR 80
            G+ L   G T  LAT+           D         L ++Y   +++V +        
Sbjct: 233 HGSALFERGNTQALATITLGSLDDSQKLDNLTGPTSKRLILHYSFPSFSVNETGAR---- 288

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
               +  E+    + ++S+  +F         V +N    +   S  + ++ + S ALM 
Sbjct: 289 --GISRREVGHGALAEKSLLGVFPDEESFPFAVRVNTETLESNGSSSMAAVCSGSMALMD 346

Query: 141 SGLPFEGPVVGAQVDYINGQ---------YVLNPR---LDEDQGSLDLFVSGTQDAVLMV 188
           +G+P +  V    +  I  +         Y L      L++  G +D  ++GT+  V  +
Sbjct: 347 AGVPIKEHVGAISIGLIMDEDETTREVKRYKLMDDIMGLEDVLGDMDFKIAGTRTGVTGI 406

Query: 189 ELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +L+     +  +++++A+       + VI+ + +  K
Sbjct: 407 QLDCKPMGIPLEILIEALDRASAARQKVIDVMERAVK 443


>gi|282897293|ref|ZP_06305295.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
 gi|281197945|gb|EFA72839.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
          Length = 458

 Score =  448 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/437 (45%), Positives = 281/437 (64%), Gaps = 10/437 (2%)

Query: 261 KYVRCKQIDDLKKKM---VSYFSSEHS-----SWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
           K  R   +D +K  +   +     E       + N   + + F+DI    +R  +++  V
Sbjct: 3   KTERDAALDVVKSAIASSIESLGEEDPIRTAATANSQVLTNTFKDITKYFMRRQIVEDNV 62

Query: 313 RMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYV-DSLSGTQ 370
           R+DGR  + VR +S+QVGLL R  HGS LF RG TQ +   TLGT  D Q + D L   Q
Sbjct: 63  RVDGRKLDEVRPVSSQVGLLPRRVHGSGLFNRGLTQVLSACTLGTPGDAQSLSDDLQVDQ 122

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              ++ HYNF P + GE   + AP RREIGHG LA RAI PVLP   QFPY +R+VSE+ 
Sbjct: 123 SKRYLHHYNFPPFSVGETKPLRAPGRREIGHGALAERAILPVLPTKEQFPYVIRVVSEVL 182

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
            S+GS+SM +VCGS+LALMDAGVPI+KPV+G AMGL+K+G +  +L+DI G ED LG MD
Sbjct: 183 SSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSEVRVLTDIQGIEDFLGDMD 242

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
           FKVAGTD+GITA+QMDMKI G+S +++  AL+QAK  RLHIL++M + + + R +   F 
Sbjct: 243 FKVAGTDTGITALQMDMKISGLSLDVIKQALEQAKDARLHILDKMLQTIDKPRTETSPFA 302

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           PR+  + I PD I  VIG GGK I+GI E+TGAK++I+D G V I++   +  + A+ +I
Sbjct: 303 PRLVTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIEDSGIVTISAIDESRAKRAKSII 362

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +T       +Y G+V +++  GAFV F   ++G++HISQL+  RV K  D V  G+ V
Sbjct: 363 QGMTRKLHEGDVYLGRVTRIIPIGAFVEFLPGKEGMIHISQLADYRVGKVEDEVAVGEEV 422

Query: 671 WVKLLDFDDRGKIKLSM 687
            VK+ + D +G+I L+ 
Sbjct: 423 IVKVREIDSKGRINLTR 439



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 27/344 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  + G + R+  G+ L   G T VL+                L V+  +R    Y  
Sbjct: 73  RPVSSQVGLLPRRVHGSGLFNRGLTQVLSACTLGTPGDAQSLSDDLQVDQSKRYLHHYNF 132

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G  +    P   EI    + +R+I P+    + +    +V+  V+  +  +S  +
Sbjct: 133 PPFSVGETKPLRAPGRREIGHGALAERAILPVLPTKEQFPYVIRVVSEVLSSNGSTS--M 190

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVSGTQD 183
            S+  ++ ALM +G+P   PV GA +  I  G  V        +++  G +D  V+GT  
Sbjct: 191 GSVCGSTLALMDAGVPITKPVSGAAMGLIKEGSEVRVLTDIQGIEDFLGDMDFKVAGTDT 250

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
            +  ++++     LS DV+  A+    +    +++ + +       E      +      
Sbjct: 251 GITALQMDMKISGLSLDVIKQALEQAKDARLHILDKMLQTIDKPRTETSPFAPRL----- 305

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS-WNEGEIVSVFEDIQA 300
             ++  I  D+      P      K I  + ++  +    E S       I         
Sbjct: 306 --VTIKIDPDMIGLVIGPG----GKTIKGITEETGAKIDIEDSGIVTISAIDESRAKRAK 359

Query: 301 KVVRTVMLD-KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
            +++ +     +  +       +  I A V  L    G     +
Sbjct: 360 SIIQGMTRKLHEGDVYLGRVTRIIPIGAFVEFLPGKEGMIHISQ 403


>gi|308801345|ref|XP_003077986.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
 gi|116056437|emb|CAL52726.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
          Length = 615

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 178/503 (35%), Positives = 272/503 (54%), Gaps = 49/503 (9%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE 65
           ++E+E     ++LETGR+  Q++GAV+A+ G+TV+ AT    R L     F PLTVNY E
Sbjct: 72  SIELEIGASRVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVPLTVNYSE 131

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           R  A G+  GG+ +R+   +E E L +R++DR IRP+  K +  +TQV+  +M  D E S
Sbjct: 132 RFSAAGRTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGERS 191

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDED-QGSLDLFVSGTQ 182
              +++ AASAAL +S +P + PVVG +V  + G  + ++NP  ++  +  LDL ++GT 
Sbjct: 192 TDALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKESRLDLVLAGTD 251

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
           +AVLM+E   + L+ D +L AI  GH       + I   A+  A   +        + ++
Sbjct: 252 EAVLMIEGFCDFLTTDEMLRAIAKGHEAVSKACKEIDAWAQTVAPPKMNEKLIVPPEGVD 311

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS----------------- 284
           E +  ++  +L  +  IP K VR   I   +++ V     ++                  
Sbjct: 312 EAVEALVGAELAEAIVIPIKQVRGATIGAARERAVEALKDQYEVRLRRLAPSRELDCALP 371

Query: 285 ----------------------------SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDG 316
                                             +++    ++++ +R  +  K  R DG
Sbjct: 372 IRRNRFSREFVGCGSTASAYKNVNALNGRPAHLAVINACGKVESRALRDTIRTKGRRQDG 431

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  VR I+ + GLL RTHGS+LF RG+TQAI V TLG  +D Q VD +  T+   FM+
Sbjct: 432 RTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDKRFML 491

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           HY F P + GE  R+G  SRRE+GHG LA RA+ P++P   +FP+  R+ S ITES+GSS
Sbjct: 492 HYFFPPSSVGETGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMESTITESNGSS 551

Query: 437 SMATVCGSSLALMDAGVPISKPV 459
           SMATVC  +LAL+DAGVP+ + V
Sbjct: 552 SMATVCAGTLALLDAGVPLKRYV 574



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 14/217 (6%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           VR  + +VG   + +G+ +   GDT             E   D        ++   ++  
Sbjct: 82  VRLETGRVG--AQANGAVMASEGDTVIYATA---CASRELTGDGSFVPLTVNYSERFSAA 136

Query: 382 PC-ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSM 438
              A G   R GA S RE    RL  R I P++P    + Y  +++  +   DG  S+  
Sbjct: 137 GRTAGGFRKRDGAVSERETLKARLVDRPIRPMIP--KGWGYDTQVLQWLMSFDGERSTDA 194

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
             +  +S AL  + +P+ KPV G+ +GL+   D+ I+    S ++     +D  +AGTD 
Sbjct: 195 LAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNP--SQEQMKESRLDLVLAGTDE 252

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            +  ++       ++ + M+ A+ +          E+
Sbjct: 253 AVLMIEGFCDF--LTTDEMLRAIAKGHEAVSKACKEI 287


>gi|312090436|ref|XP_003146614.1| 3' exoribonuclease [Loa loa]
 gi|307758222|gb|EFO17456.1| 3' exoribonuclease [Loa loa]
          Length = 634

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 213/680 (31%), Positives = 333/680 (48%), Gaps = 72/680 (10%)

Query: 40  VLATVVYD-RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRS 98
           VLATVV    S  D  DF PLTV++Q+   AVG+IP  YLRRE +  + +IL SRMIDRS
Sbjct: 4   VLATVVGRHSSTSDTADFMPLTVDFQQSASAVGRIPTNYLRRELQRNDADILASRMIDRS 63

Query: 99  IRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN 158
           IRPLF K Y  ETQ+I   +  D +  P ++ + AASAAL LS +P+EGP+   ++  IN
Sbjct: 64  IRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAASAALTLSDIPWEGPLGAVRIALIN 123

Query: 159 GQYVLNPRLDEDQ-GSLDLFVSGTQDA--VLMVELEANQLSEDVVLDAIIFGHNECKPVI 215
            + V+NP     +  SLDL ++   D   +LM++++  +   +     I  G      +I
Sbjct: 124 NEIVVNPSRKNMKISSLDLVIAACDDGNRILMIDMDGCETGIEKFAACIETGLQAISYLI 183

Query: 216 EAISKLAKMCAKEPI-----VIDSKDFSKLEEEMSQMIKEDLR--VSCFIPEKYVRCKQI 268
           +AI+K+   C ++        ID  D   L EEM  +  + L   ++    +K  R + +
Sbjct: 184 QAINKVRDSCGRQKRQNICGEIDI-DMIALMEEMQILYGDQLYHILTDIEHDKLSRDRAV 242

Query: 269 DDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQ 328
             L   M+             ++   F ++  K +R  +   + R DGR  + +R +  +
Sbjct: 243 SALGNHMLESLKER---STPHKLRHTFTNLLKKSLREALFKSERRCDGRKFDELRPVDIK 299

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           + + ++ HGS+LF RG TQ    VT          D+LS                     
Sbjct: 300 MDVHKKLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALS--------------------- 338

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
                                         FPY LR+  ++ ES+GSSSMA+VC   LAL
Sbjct: 339 -------------------------QLLEDFPYCLRLACDVLESNGSSSMASVCAGCLAL 373

Query: 449 MDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           +DAGV +  P AG+AMGL+  K+ +D+ IL+DI+G ED  G MDFK+AGT  G TAMQ+D
Sbjct: 374 LDAGVQMKTPAAGVAMGLIIDKERNDYRILTDINGLEDFAGDMDFKIAGTVRGYTAMQLD 433

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +K+ GI   +M+ +L+QA+ G  H+L  M K     R       P  E + +   +   +
Sbjct: 434 LKVPGIKPEVMMESLEQARNGLEHLLQLMRKAQPFCRNHFKSTVPVHETIPVEIYKRHII 493

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI---- 622
              GG   + I  +TGAK++++DD  + I + +  ++E A+ M+  + +     ++    
Sbjct: 494 FRSGGYNAKLIESETGAKISVEDDANISIFAPNKVKLEEAKMMLTKMFESESEIELVFGA 553

Query: 623 -YKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD 679
            YKG++  V++ G  V      +  L+  S L    VA    +  K G  + ++ L  D 
Sbjct: 554 MYKGEITDVLEHGVLVTLHKSMKPILLKNSNLDVRNVAHPKVLGFKVGQKIIIQYLGRDP 613

Query: 680 R-GKIKLSMKVVDQNTGKPI 698
             G  ++S K + Q+   PI
Sbjct: 614 NTGYHRISRKTL-QSASLPI 632


>gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 519

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 204/418 (48%), Positives = 280/418 (66%), Gaps = 2/418 (0%)

Query: 222 AKMCAKEPIVIDSK-DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           A   AK       K + ++L   +     E +  +  I  K  R  ++ +LK ++V+  +
Sbjct: 1   AAEAAKPTWAWQPKPEATELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLA 60

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            E  S +  E+ + F +I+ + VR  +++ K R+DGRD+ TVR ++ +VG+L +THGS+L
Sbjct: 61  VEEGSPSASEVKAAFGEIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSAL 120

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQA+VV TLGT  D Q +D+L G +++ FM+HYNF P + GE  RMG   RREIG
Sbjct: 121 FTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIG 180

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HGRLARR++  +LP    FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVA
Sbjct: 181 HGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVA 240

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GIAMGLVK+G+ F IL+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +A
Sbjct: 241 GIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIA 300

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QA   RL+IL +M++++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+
Sbjct: 301 LGQALEARLNILGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEE 360

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           T A ++I+DDG++KI   S    EAAR+ +  IT   E+ KIY G      D   F  
Sbjct: 361 TKASIDIEDDGSIKIFGESKEAAEAARQRVLGITAEAEIGKIYVGN-TNQNDSFLFGP 417



 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 24/213 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-----DGQDFFPLTVNYQER 66
           RPL +E G + + + G+ L T GET  L        R  +     +G+   P  ++Y   
Sbjct: 103 RPLNIEVGVLPK-THGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 161

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R       EI   R+  RS++ +      +    +V+  + + +  S
Sbjct: 162 PFSVGECG-----RMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSS 216

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVS 179
           S  + S+  AS ALM +G+P + PV G  +  +  G+           ++  G +D  V+
Sbjct: 217 S--MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVA 274

Query: 180 GTQDAVLMVELEANQ--LSEDVVLDAIIFGHNE 210
           GT   V  ++++     ++E+++  A+      
Sbjct: 275 GTSKGVTALQMDIKIKGITEEIMEIALGQALEA 307


>gi|46203340|ref|ZP_00051652.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 386

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 231/367 (62%), Positives = 284/367 (77%)

Query: 332 LQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM 391
           + R HGS+L    +TQA++  TLGT +DEQ  D L+G  R  FM+HYN  P + GE  RM
Sbjct: 1   MPRAHGSALLSLVETQALLFATLGTGQDEQISDHLAGEYREHFMLHYNCPPYSVGEAGRM 60

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
           G+P RREIGHG+LA RA+ P LP    FPYT+R+VSEITES+GSSSMATVCGSSLA+MDA
Sbjct: 61  GSPGRREIGHGKLAWRAMRPTLPTKESFPYTMRVVSEITESNGSSSMATVCGSSLAMMDA 120

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           GVP+ KPVAGIAMGL+K+G+DF +LSDI GDEDHLG MDFKVAGT  G+TA+QMD+KI  
Sbjct: 121 GVPLPKPVAGIAMGLIKEGNDFAVLSDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITS 180

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I+E IM +AL QAK GR+HIL EM+K L  +R  +    PR+  ++IP ++IR VIG GG
Sbjct: 181 ITEEIMKIALGQAKDGRIHILGEMNKGLDHARDSVSGNAPRITSISIPKEKIREVIGTGG 240

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           KVIR I EQTGAK++IDDDGT+K+AS      + A + IR I   PE+  IY G+VVKV+
Sbjct: 241 KVIREICEQTGAKIDIDDDGTIKVASVDADAAQRAIDWIRGIVAEPELGVIYNGKVVKVV 300

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           DFGAFV+F G+RDGLVHIS+L+ ERVAKT+DVVK+GD V VK+L FDDRGK+KLSMK VD
Sbjct: 301 DFGAFVNFLGSRDGLVHISELARERVAKTADVVKQGDVVKVKVLGFDDRGKVKLSMKQVD 360

Query: 692 QNTGKPI 698
           Q TG+ I
Sbjct: 361 QTTGEDI 367



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 15/195 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAVGKIPGGYLRRESR 83
           + G+ L +  ET  L       + +D Q    L   Y+E     Y       G   R   
Sbjct: 4   AHGSALLSLVETQALLFATLG-TGQDEQISDHLAGEYREHFMLHYNCPPYSVGEAGRMGS 62

Query: 84  PTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           P   EI   ++  R++RP     + +    +V+  + + +  SS  + ++  +S A+M +
Sbjct: 63  PGRREIGHGKLAWRAMRPTLPTKESFPYTMRVVSEITESNGSSS--MATVCGSSLAMMDA 120

Query: 142 GLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELE--ANQ 194
           G+P   PV G  +  I   N   VL+  L ++   G +D  V+GT D V  ++++     
Sbjct: 121 GVPLPKPVAGIAMGLIKEGNDFAVLSDILGDEDHLGDMDFKVAGTVDGVTALQMDIKITS 180

Query: 195 LSEDVVLDAIIFGHN 209
           ++E+++  A+    +
Sbjct: 181 ITEEIMKIALGQAKD 195


>gi|156311439|ref|XP_001617784.1| hypothetical protein NEMVEDRAFT_v1g47702 [Nematostella vectensis]
 gi|156195791|gb|EDO25684.1| predicted protein [Nematostella vectensis]
          Length = 443

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 180/445 (40%), Positives = 264/445 (59%), Gaps = 9/445 (2%)

Query: 106 CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP 165
            Y  ETQV+I +M HD    P  ++ +AASAAL +S +PF   +   +V  ++G +++NP
Sbjct: 1   DYHAETQVMIQLMSHDENVMPDALAGLAASAALAVSDIPFYNLISEVRVARVDGNFIINP 60

Query: 166 RLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             ++     LD+ +  + D+V MVE E  ++SE  +++AI F H   K  I A  KL   
Sbjct: 61  SREQLATSDLDMMIGASMDSVAMVEGEMKEISEAEMIEAIKFAHEAIKIQITAQEKLRAA 120

Query: 225 CAKEPIVIDS--KDFSKLEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSS 281
                        +   +  ++     +     +     K  R ++  ++K+++ + F+ 
Sbjct: 121 IGSPAYREYEGEPEDEAVYAKIKAASYDKYYAIAESASAKSERGEKFAEIKEEVKALFTE 180

Query: 282 EHSSWN---EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
           E  + N      I       Q + VR V+L+K  R+DGR +  +R I  +V  L  THGS
Sbjct: 181 EDLAENPDLAELINKYIYKTQKEAVRNVILEKGTRLDGRKTTEIRPIWCEVDYLPSTHGS 240

Query: 339 SLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
           ++F RG+TQA+  VTLGT  +   +D  S      F +HYNF P +TGE   +   SRRE
Sbjct: 241 AIFTRGETQALATVTLGTSREANQIDLPSEQGEETFYLHYNFPPFSTGEARPLRGTSRRE 300

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
           +GHG LA+RA+  ++P  A  PYT+R+VSE+ ES+GSSSMATVC  +LA+MDAG+ + KP
Sbjct: 301 VGHGNLAQRALKNMIP--ADCPYTVRVVSEVLESNGSSSMATVCSGTLAMMDAGIQMIKP 358

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           V+GIAMGL+ DG++F +LSDI GDEDHLG MDFKV GT  GITA QMD+KI G+  +IM 
Sbjct: 359 VSGIAMGLITDGNNFAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIDGLRYDIME 418

Query: 519 MALQQAKRGRLHILNEMSKVLSESR 543
            AL QA+ GRLHIL ++ + L++ R
Sbjct: 419 QALSQAREGRLHILGKLVETLAQPR 443



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 15/193 (7%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP--- 84
            G+ + T GET  LATV    + ++       +   +E  Y     P  +   E+RP   
Sbjct: 238 HGSAIFTRGETQALATVTLG-TSREANQIDLPSEQGEETFYLHYNFPP-FSTGEARPLRG 295

Query: 85  -TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
            +  E+    +  R+++ +         +V+  V++ +  SS  + ++ + + A+M +G+
Sbjct: 296 TSRREVGHGNLAQRALKNMIPADCPYTVRVVSEVLESNGSSS--MATVCSGTLAMMDAGI 353

Query: 144 PFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELE--ANQLS 196
               PV G  +  I   N   VL+  L ++   G +D  V+GT D +   +++   + L 
Sbjct: 354 QMIKPVSGIAMGLITDGNNFAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIDGLR 413

Query: 197 EDVVLDAIIFGHN 209
            D++  A+     
Sbjct: 414 YDIMEQALSQARE 426


>gi|46201049|ref|ZP_00055817.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 354

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 168/343 (48%), Positives = 230/343 (67%), Gaps = 7/343 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+VH  EI W GR L LETG+IARQ+DGAVL TYGET VL TVV  +S K G DFFPLT
Sbjct: 3   MFNVHRKEITWGGRKLVLETGKIARQADGAVLVTYGETSVLCTVVGAKSQKPGIDFFPLT 62

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQE+ +A GKIPGG+ +RE RP+E E L+SR+IDR IRPLF+  ++NE QV+  V+ H
Sbjct: 63  VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVLSH 122

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS 179
           DLE+ P + ++V  SAAL +SGLPF GPV  A+V Y+NG+YVLNP + D  +  LDL V+
Sbjct: 123 DLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVNGEYVLNPLVGDLPKSDLDLVVA 182

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK--DF 237
           GT + VLMVE EA QLSED++L A++FGH   + VI+AI +LA+ CAK+P  +     + 
Sbjct: 183 GTVEGVLMVESEAKQLSEDIMLGAVMFGHRSFQAVIQAIIELAEECAKDPWDLPEPPAEV 242

Query: 238 SKLEEEMSQM-IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           + +  + +   +  +L  +  I +K  R   +  +KKK ++  +        G    + +
Sbjct: 243 AVVTGKFNDAGVPAELAEAYKIIKKQDRYAAVGAIKKKALALLTEAAEIAVAG---GILK 299

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSS 339
            ++A VVR  +L   VR+DGRD++TVR I  +VG+L R HGS 
Sbjct: 300 HLEADVVRGNILKTGVRIDGRDTKTVRAIEVEVGVLPRAHGSG 342



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 102/251 (40%), Gaps = 23/251 (9%)

Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R +  + G + R   G+ L   G+T  +  V +G +  +  +D           ++Y   
Sbjct: 16  RKLVLETGKIARQADGAVLVTYGETSVLCTV-VGAKSQKPGIDFFP------LTVNYQEK 68

Query: 382 PCATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--G 434
             A G++      R G PS +E    RL  R I P+      F   +++V  +   D   
Sbjct: 69  AFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLF--ADGFRNEVQVVCTVLSHDLEN 126

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
              +A + G+S AL  +G+P   PV    +G V    ++++   +         +D  VA
Sbjct: 127 DPDIAALVGTSAALTISGLPFMGPVGAARVGYVN--GEYVLNPLVGDLPKS--DLDLVVA 182

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           GT  G+  ++ + K   +SE+IM+ A+    R    ++  + ++  E      +      
Sbjct: 183 GTVEGVLMVESEAKQ--LSEDIMLGAVMFGHRSFQAVIQAIIELAEECAKDPWDLPEPPA 240

Query: 555 IMAIPPDQIRN 565
            +A+   +  +
Sbjct: 241 EVAVVTGKFND 251


>gi|89888168|gb|ABD78634.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
 gi|89888171|gb|ABD78636.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
 gi|89888174|gb|ABD78638.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
          Length = 359

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/359 (41%), Positives = 230/359 (64%), Gaps = 7/359 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF+  T   ++    + LETG IARQ+ GAVL +  +TVVLATVV  +  K GQ FFPLT
Sbjct: 1   MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQTFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y E+TYA G+IPGG+ +RE +P+E E L SR+IDR +RPLF + + NE QV+I+ +  
Sbjct: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVS 179
           + E  P + +M+ ASAAL +SG+PF GP+  A+V Y++GQYVLNP   + + S +DL V+
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTASQLKTSKMDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFS 238
           GT++AVLMVE EA QLSE+++L  ++FGH + +  + AI  L +   K       +    
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAVNAIHDLVRDAGKPEWNWAPAAKND 240

Query: 239 KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE-----HSSWNEGEIVS 293
            L   ++   +E L  +  I EK  R  ++ D+   + +  + +       + +   + +
Sbjct: 241 ALIAAVTAAAQEGLTAAYQIREKQARTTKLRDVYADVSAKLAEQAAAAGQDAPDSVTVDN 300

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  D++A++VR+ +L+ + R+DGRD+ TVR IS ++G+L R HGS+LF RG+TQA+VV 
Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVA 359



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 91/234 (38%), Gaps = 21/234 (8%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +  + G + R    ++ +  +   ++   +  ++ +       G       + Y     A
Sbjct: 16  VVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAK------PGQTFFPLTVDYIEKTYA 69

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS +E    RL  R + P+ P    F   +++V      +      
Sbjct: 70  AGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFP--EDFYNEVQVVIHTLSVNPEIDPD 127

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G V    D   + + +  +     MD  VAGT+
Sbjct: 128 IPAMIGASAALAISGIPFNGPIGAARVGYV----DGQYVLNPTASQLKTSKMDLVVAGTE 183

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           + +  ++ + +   +SE IM+  +          +N +  ++ ++      + P
Sbjct: 184 NAVLMVESEAQQ--LSEEIMLGGVVFGHEQMQAAVNAIHDLVRDAGKPEWNWAP 235


>gi|47218201|emb|CAF97065.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 556

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/442 (33%), Positives = 246/442 (55%), Gaps = 13/442 (2%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L++ +GR+AR +DG+ +   GET V+ T V        Q F PL V+Y+++  A G+I
Sbjct: 1   RKLEISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRI 59

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
           P  YLRRE   T+NEIL SR+IDRS+RPLF   Y  +TQV+ N++  D  + P V+++ A
Sbjct: 60  PTNYLRRELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINA 119

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDA-VLMVELE 191
           ASAAL LS +P+ GP+   +V  ++G+ ++NP   E   S L+L VSG   + V+M+E  
Sbjct: 120 ASAALALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTLNLVVSGGPSSQVVMIEAS 179

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM--CAKEPIVIDSKDFSKLEEEMSQMIK 249
           A  + +     A+  G    + +I AI +LA+     K   V      + + E + Q+  
Sbjct: 180 AENVLQQDFCHAVKVGIKHTQQIIHAIQQLAREQKVTKRTPVKVFSAPADVVEYVRQVAS 239

Query: 250 EDLRV--SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           E +    + +  +K  R + I+ ++ +               E++  F  +   + R ++
Sbjct: 240 ESIYAVFTDYTHDKISRDEAINKVRLETEETIKDRFPQAEPFEVIESFNTVCKDIFRNLV 299

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD--- 364
           L++  R DGR+   +R+IS +V L +  HGS+LF RG TQ +  VT  + E     D   
Sbjct: 300 LNEYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADIIT 359

Query: 365 -SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +LSG +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+  V+P+   FP+T+
Sbjct: 360 TALSGIKDKNFMLHYEFPPYATNETGKVAGLNRRELGHGALAEKALRSVIPKE--FPFTI 417

Query: 424 RIVSEITESDGSSSMATVCGSS 445
           R+ +E+ ES+G  +++    ++
Sbjct: 418 RVTAEVLESNGEYAVSETAPAT 439


>gi|332141240|ref|YP_004426978.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551262|gb|AEA97980.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 382

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 201/375 (53%), Positives = 269/375 (71%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +    G+L RTHGS+LF RG+TQAI+  TLGT  D Q +D L G + + FM+HYNF
Sbjct: 1   MIRALDVATGILPRTHGSALFTRGETQAIMAATLGTERDAQMIDELQGKRDSRFMLHYNF 60

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P   GE   +G+P RREIGHGRLA+R I  V+P   +FPY +R+VSEITES+GSSSMA+
Sbjct: 61  PPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITESNGSSSMAS 120

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           VCG+SLALMDAGVPI   VAGIAMGLVK  D+F++LSDI GDEDHLG MDFKVAGT  GI
Sbjct: 121 VCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKVAGTTDGI 180

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           TA+QMD+KI GI++ IM +AL+QAK  RLHILN M + +   R +L EF PR+  M I  
Sbjct: 181 TALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGHREELSEFAPRIYTMKIDQ 240

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+IR+VIG GG +IR I E++   + I+DDGT+KI ++  A+ + A   I  +T   EV 
Sbjct: 241 DKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATERAKADIAIGKIEQVTAEIEVG 300

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           K Y G++ +++DFGAFV     ++GLVHISQ++ ERV K +D +KEG+ V VK+++ D +
Sbjct: 301 KTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVTDYLKEGEMVDVKVMEIDRQ 360

Query: 681 GKIKLSMKVVDQNTG 695
            +++LS+K + +   
Sbjct: 361 NRVRLSIKELLEKPA 375



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 121/293 (41%), Gaps = 30/293 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL--------TVNYQE 65
           R L + TG + R + G+ L T GET  +         +D Q    L         ++Y  
Sbjct: 3   RALDVATGILPR-THGSALFTRGETQAIMAATLGTE-RDAQMIDELQGKRDSRFMLHYNF 60

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLE 123
             Y VG+           P   EI   R+  R I+ +    + +    +V+  + + +  
Sbjct: 61  PPYCVGETGMI-----GSPKRREIGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITESNGS 115

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQGSLDLFV 178
           SS  + S+   S ALM +G+P +  V G  +  +  +  +V+   +   ++  G +D  V
Sbjct: 116 SS--MASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKV 173

Query: 179 SGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
           +GT D +  ++++     ++++++  A+         ++  + +      +E      + 
Sbjct: 174 AGTTDGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGHREELSEFAPRI 233

Query: 237 FSK--LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           ++    ++++  +I +   +   I E+     +I+D     +  F++E +  +
Sbjct: 234 YTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIED--DGTIKIFATERAKAD 284


>gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays]
 gi|219886165|gb|ACL53457.1| unknown [Zea mays]
          Length = 733

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 183/521 (35%), Positives = 299/521 (57%), Gaps = 20/521 (3%)

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLE 241
           M++++A ++SE  +   +   H+E    I+    LAK   K+        I    + K+ 
Sbjct: 1   MIDVQAREISERDLQAGMKLAHSEAIKCIDPQISLAKRAGKKKKEYKISLISDTSYEKIR 60

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
                 I+E    S +   K+ R   ++ + + + +    E+   +   +    + ++ +
Sbjct: 61  TFSEAPIEEVFTDSSY--GKFERGGALEKITQSVKAKLEEENDEDSLKFLHKAVDTVRKQ 118

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V+R  ++++ +R+DGR  + VR +  +       HGS+LF RGDTQ +  VTLG   D Q
Sbjct: 119 VIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQ 178

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +DS+ G     FM+HY+F P +  EV++ G  +RRE+GHG LA +A+  VLP  + FPY
Sbjct: 179 RLDSIVGPPTKRFMLHYSFPPFSIDEVAKRGGLNRREVGHGTLAEKALLAVLPPESDFPY 238

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------DGDDFI 474
           T+R+ +E+  SDGS+SMA+VCG S+ALMDAG+P+ + VAG+++GLV        D  ++ 
Sbjct: 239 TVRVNAEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPATGDISNYR 298

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+DI G EDHLG MDFK+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R  IL+ 
Sbjct: 299 ILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICESLEPARKARNQILDR 358

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M + +S +R      +PR+  ++   + +R ++       + I ++TGA+V+I D GTV 
Sbjct: 359 MDQEISTARGINDGSSPRLATLSFSNESLRKLL----FHRKKIEQETGARVSISD-GTVT 413

Query: 595 IASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           I + +   ++ A E +  +     EV + YKG V  + ++GAFV F G + GL+HIS+LS
Sbjct: 414 IVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHISELS 473

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            + V K SDVV  G ++ ++ +  D RG IKLS+K      
Sbjct: 474 HQPVTKVSDVVTLGQSLSLRCIGQDMRGNIKLSLKATLPQP 514



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 82/219 (37%), Gaps = 36/219 (16%)

Query: 28  DGAVLATYGETVVLATVV-YDRSLKDGQDFFP------LTVNYQERTYAVGKIPGGYLRR 80
            G+ L + G+T VL TV           D           ++Y    +++ ++      +
Sbjct: 153 HGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSIDEVA-----K 207

Query: 81  ESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                  E+    + ++++  +      +    +V   VM  D   S  + S+   S AL
Sbjct: 208 RGGLNRREVGHGTLAEKALLAVLPPESDFPYTVRVNAEVMASDG--STSMASVCGGSMAL 265

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNP---------------RLDEDQGSLDLFVSGTQD 183
           M +G+P    V G  V  +     ++P                L++  G +D  ++GT+ 
Sbjct: 266 MDAGIPVREHVAGVSVGLV---SQVDPATGDISNYRILTDILGLEDHLGDMDFKIAGTRK 322

Query: 184 AVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
            +  ++L+     +  D++ +++         +++ + +
Sbjct: 323 GITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 361


>gi|297172161|gb|ADI23142.1| hypothetical protein [uncultured gamma proteobacterium
           HF0770_09E07]
          Length = 442

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 194/438 (44%), Positives = 278/438 (63%), Gaps = 6/438 (1%)

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
           ++ DL  +    +K  R +++  +K  ++     E       +    F++++  VVR  +
Sbjct: 5   VRGDLVDAFTTTDKKERNEKVSSIKDNLMQDLDEELHDLYTKQ----FKEVEKDVVRGNV 60

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           L+ + R+DGR    VRDI+ +   L   HGS+LF RG+TQAIV  TLG+  D Q VD+L 
Sbjct: 61  LNDQKRIDGRGMTEVRDITIETNFLPSVHGSALFTRGETQAIVTTTLGSGRDVQTVDALQ 120

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G  +++FM+HYNF   + GE+     P RREIGHG LA+R++   +P    FPY +R+VS
Sbjct: 121 GEIKDNFMLHYNFPSYSVGELGFPMGPKRREIGHGALAKRSLKFGVPSLEDFPYAIRVVS 180

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           EITES+GSSSMA+VCG SLALM AGVPI + VAG+AMGL+K+GD + +L+DI GDEDHLG
Sbjct: 181 EITESNGSSSMASVCGGSLALMAAGVPIKENVAGVAMGLIKEGDKYEVLTDILGDEDHLG 240

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAGT +G+T +QMD+KI GI+E I+  AL QAK  R+HIL +M  VLS+  L+L 
Sbjct: 241 DMDFKVAGTKNGVTGLQMDIKIEGINEEILEKALMQAKDARMHILEKMDAVLSKP-LELT 299

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P      +  D+++ VIG GG  I+G+ E+ G  + + D G V + + +      A+
Sbjct: 300 SLAPSFTKFKVHKDKVKVVIGKGGSTIKGLQEEFGVTIELQDSGEVSVFAENKEIANQAK 359

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I  +   PE  K+Y G V KV++FGAFV     +DGL+HISQ   +     +DV+ EG
Sbjct: 360 EKIELLCAEPEEGKVYDGVVAKVVEFGAFVTIMPGKDGLLHISQFKEDF-EHLTDVINEG 418

Query: 668 DTVWVKLLDFDDRGKIKL 685
           DT+ VKL++   +G++KL
Sbjct: 419 DTIKVKLVEVGRQGRLKL 436



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 24/219 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV-YDRSLKDGQDFFP------LTVNYQER 66
           R + +ET  +     G+ L T GET  + T            D           ++Y   
Sbjct: 76  RDITIETNFL-PSVHGSALFTRGETQAIVTTTLGSGRDVQTVDALQGEIKDNFMLHYNFP 134

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
           +Y+VG++  G+      P   EI    +  RS++      + +    +V+  + + +  S
Sbjct: 135 SYSVGEL--GFP---MGPKRREIGHGALAKRSLKFGVPSLEDFPYAIRVVSEITESNGSS 189

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLFVS 179
           S  + S+   S ALM +G+P +  V G  +  I   +   VL   L ++   G +D  V+
Sbjct: 190 S--MASVCGGSLALMAAGVPIKENVAGVAMGLIKEGDKYEVLTDILGDEDHLGDMDFKVA 247

Query: 180 GTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIE 216
           GT++ V  ++++     ++E+++  A++   +    ++E
Sbjct: 248 GTKNGVTGLQMDIKIEGINEEILEKALMQAKDARMHILE 286


>gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 726

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 179/499 (35%), Positives = 284/499 (56%), Gaps = 20/499 (4%)

Query: 204 IIFGHNECKPVIEAISKLAKMCAKEPIV-----IDSKDFSKLEEEMSQMIKEDLRVSCFI 258
           +   H+E    I+   +LAK   KE        I  + + K+       I+E      + 
Sbjct: 1   MKLAHSEAVKYIDPQIRLAKRAGKEKREYKLSMISDESYEKIRTLSEAPIEEVFTDKSY- 59

Query: 259 PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318
             K+ R + + ++ + +      E    +   +    + ++ +V+R  ++ + +R+DGR 
Sbjct: 60  -GKFERGEALQNITESVKEKLEEECDEESLKFLPKAVDTVRKQVIRKRIIKEGLRVDGRR 118

Query: 319 SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHY 378
            + VR +  +       HGS+LF RGDTQ +  VTLG   D Q +DS+ G     FM+HY
Sbjct: 119 LDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFMLHY 178

Query: 379 NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
           +F P +  EV++ G  +RRE+GHG LA +A+  VLP    FPYT+R+ SE+  SDGS+SM
Sbjct: 179 SFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPEGDFPYTVRVNSEVMASDGSTSM 238

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-------FIILSDISGDEDHLGHMDF 491
           A+VCG S+ALMDAG+P+ + VAG+++GLV + D        + IL+DI G EDHLG MDF
Sbjct: 239 ASVCGGSMALMDAGIPVREHVAGVSVGLVSEADPTTGDISSYRILTDILGLEDHLGDMDF 298

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           K+AGT  GITA+Q+D+K  GI  +I+  +L+ A++ R  IL+ M + +S +R      +P
Sbjct: 299 KIAGTRRGITAIQLDIKPAGIPLDIVCESLEPARKARNQILDRMDQEISTARAINDGSSP 358

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
           R+  ++   + +R ++       + I + TGA+V++ D GTV I + +   ++ A E + 
Sbjct: 359 RLATLSFSSNSLRKLL----FHRKKIEQDTGARVSVSD-GTVTIVAKTQPIMDKAIEKVE 413

Query: 612 SIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            +     EV K YKG V  + ++GAFV F G + GL+HIS+LS E V+K SD++  G  +
Sbjct: 414 FLVGREIEVGKTYKGIVSSIKEYGAFVDFNGGQQGLLHISELSHEPVSKVSDIISVGQAL 473

Query: 671 WVKLLDFDDRGKIKLSMKV 689
            +  +  D RG IKLS+K 
Sbjct: 474 SLTCIGQDVRGNIKLSLKA 492



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 79/215 (36%), Gaps = 28/215 (13%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLT---VNYQERTYAVGKIPGGYLRRESRP 84
            G+ L + G+T VL TV       D Q    +           Y+        + +    
Sbjct: 136 HGSALFSRGDTQVLCTVTLGA-PGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGL 194

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E+    + ++++  +      +    +V   VM  D   S  + S+   S ALM +G
Sbjct: 195 NRREVGHGTLAEKALLAVLPPEGDFPYTVRVNSEVMASDG--STSMASVCGGSMALMDAG 252

Query: 143 LPFEGPVVGAQVDYINGQYVLNPR---------------LDEDQGSLDLFVSGTQDAVLM 187
           +P    V G  V  ++     +P                L++  G +D  ++GT+  +  
Sbjct: 253 IPVREHVAGVSVGLVSE---ADPTTGDISSYRILTDILGLEDHLGDMDFKIAGTRRGITA 309

Query: 188 VELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++L+     +  D+V +++         +++ + +
Sbjct: 310 IQLDIKPAGIPLDIVCESLEPARKARNQILDRMDQ 344


>gi|213850433|ref|ZP_03381331.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 369

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 189/354 (53%), Positives = 258/354 (72%)

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
           F RG+TQA+V  TLGT  D Q +D L G + + F+ HYNF P + GE   +G+P RREIG
Sbjct: 1   FTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIG 60

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
           HGRLA+R +  V+P   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VA
Sbjct: 61  HGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 120

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           GIAMGLVK+GD++++LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +A
Sbjct: 121 GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVA 180

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           L QAK  RLHIL  M + ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+
Sbjct: 181 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEE 240

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           TG  + I+DDGTVKIA++   + + A   I  IT   EV +IY  +V +++DFGAFV   
Sbjct: 241 TGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIG 300

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 301 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 354



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 27/195 (13%)

Query: 34  TYGETVVLATVV--YDRSLK-------DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           T GET  L T      R  +       +  D F    +Y    Y+VG+           P
Sbjct: 2   TRGETQALVTATLGTARDAQVLDELMGERTDSFLF--HYNFPPYSVGETGMV-----GSP 54

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              EI   R+  R +  +      +    +V+  + + +  SS  + S+  AS ALM +G
Sbjct: 55  KRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSS--MASVCGASLALMDAG 112

Query: 143 LPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQ--L 195
           +P +  V G  +  +   +   VL+  L ++   G +D  V+G++D +  ++++     +
Sbjct: 113 VPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI 172

Query: 196 SEDVVLDAIIFGHNE 210
           +++++  A+      
Sbjct: 173 TKEIMQVALNQAKGA 187


>gi|289804468|ref|ZP_06535097.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 362

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 193/360 (53%), Positives = 262/360 (72%)

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLG
Sbjct: 2   HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 61

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           T  D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P 
Sbjct: 62  TARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 121

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++
Sbjct: 122 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 181

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M
Sbjct: 182 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 241

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
            + ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKI
Sbjct: 242 EQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 301

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           A++   + + A   I  IT   EV +IY  +V +++DFGAFV   G ++GLVHISQ++ +
Sbjct: 302 AATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADK 361



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T      R  +       +  D F    +Y 
Sbjct: 29  RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLF--HYN 85

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDL 122
              Y+VG+           P   EI   R+  R +  +      +    +V+  + + + 
Sbjct: 86  FPPYSVGETGMV-----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 140

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L ++   G +D  
Sbjct: 141 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 198

Query: 178 VSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNE 210
           V+G++D +  ++++     ++++++  A+      
Sbjct: 199 VAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 233


>gi|224006464|ref|XP_002292192.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971834|gb|EED90167.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
           CCMP1335]
          Length = 659

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 209/683 (30%), Positives = 330/683 (48%), Gaps = 79/683 (11%)

Query: 58  PLTVNYQERTYAVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKN----- 109
           PL V+Y+ER +A GKIP    RR       T+ E+L SR+IDR+IRP       +     
Sbjct: 1   PLQVDYRERYHAAGKIPVHNRRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAI 60

Query: 110 ----ETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI----NGQY 161
                  V   V  +D             S A  ++G  F  P+  A    +    +G  
Sbjct: 61  SLPGNIVVNCEVQSYD-------------SRASSINGKKFPVPLKAAACVKLAIQRDGSV 107

Query: 162 VLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           V +P  +E +    +L  +GT+D VLM+E E   +SE  V +A++       P+IE   +
Sbjct: 108 VYDPSPNESEDAKFELLYAGTKDRVLMLEFEDPGVSETTVANALMLAQEAILPIIEQQEQ 167

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           L +          +  ++  +    +++ +           +     +D++  +  +   
Sbjct: 168 LRQ----------NYRYNASDSTGEELMTDGEVAQLLGLNSFEETTTLDEVHCEDGAKLF 217

Query: 281 SEHSSWNE--GEIVSVFED--IQAKVVR---TVMLDKKV-----------RMDGRDSETV 322
            ++   +     I +   D  + +K VR     ++  ++           R DGR +  V
Sbjct: 218 GDNGEESPTIQNIPAHIHDGTLLSKQVRGRREYIVKSEITRLLKCAMINLRADGRGTNAV 277

Query: 323 RDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R ISA   +     HGSS F RG+TQ I   ++G   D   V   S    +   +HY+F 
Sbjct: 278 RPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSD--GVPHASPYSDSSAFLHYDFP 335

Query: 382 PCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
             +TG V   G  S  RR IGHG LA +A+ PVLP    FPY +R+  E+T S+GSSSMA
Sbjct: 336 DFSTGTVKSKGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNGSSSMA 395

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
             CGS+LAL+DAGVP+  PVAG+++GL  D     +L DI+G EDH G MDFKV GT  G
Sbjct: 396 AACGSTLALLDAGVPLVSPVAGVSVGLTPDSK--TLLLDITGTEDHYGDMDFKVCGTSGG 453

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS--ESRLQLGEFTPRVEIMA 557
           + +MQ+D+K   ++  ++  AL  AK GR  IL  M K +     R  +    PR+E++ 
Sbjct: 454 VLSMQLDVKNP-VTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPRIEVVK 512

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             P++ R++IG GG V+R + ++    +++  DG +     +L  +  A+ +I  +    
Sbjct: 513 FDPNRKRDLIGPGGSVLRQLEDRFNVSLDLSQDGLI---FGALQAVSGAKRVIMDLVADV 569

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-------DVVKEGDTV 670
           E   +Y+G V+++ DFGA V     ++GL+H+S+L+ +             D +K GD +
Sbjct: 570 EEGGVYEGTVIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLKVGDKI 629

Query: 671 WVKLLDFDD-RGKIKLSMKVVDQ 692
            V     D  +G IKLS K + Q
Sbjct: 630 EVLCTKIDHVQGSIKLSRKKLLQ 652



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 28  DGAVLATYGETVVLATVV------YDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
            G+   + GET V+ T                 D     ++Y    ++ G +     + E
Sbjct: 292 HGSSQFSRGETQVICTASIGAPSDGVPHASPYSDSSAF-LHYDFPDFSTGTVKS---KGE 347

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
           S      I    + ++++ P+      +    ++   V   +  SS  + +   ++ AL+
Sbjct: 348 SSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNGSSS--MAAACGSTLALL 405

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRL---DEDQGSLDLFVSGTQDAVLMVELEANQ-L 195
            +G+P   PV G  V        L   +   ++  G +D  V GT   VL ++L+    +
Sbjct: 406 DAGVPLVSPVAGVSVGLTPDSKTLLLDITGTEDHYGDMDFKVCGTSGGVLSMQLDVKNPV 465

Query: 196 SEDVVLDAIIFGHNECKPVIEAISK 220
           +  V+  A+    +    ++ A+ K
Sbjct: 466 TMKVIASALSLAKDGRNAILAAMGK 490


>gi|213852747|ref|ZP_03382279.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 325

 Score =  391 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 134/313 (42%), Positives = 193/313 (61%), Gaps = 2/313 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 13  NPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 73  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 133 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KL 240
           + AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  +  L
Sbjct: 193 EAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDAL 252

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQA 300
              ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +   I+ 
Sbjct: 253 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEK 312

Query: 301 KVVRTVMLDKKVR 313
            VVR+ +L  + R
Sbjct: 313 NVVRSRVLAGEPR 325



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 107/242 (44%), Gaps = 21/242 (8%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++ +  D  A+ V  +G ++ +       G       ++Y     A
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK------PGQDFFPLTVNYQERTYA 79

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS  E    RL  R + P+ P    F   +++++ +   +   +  
Sbjct: 80  AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFP--EGFVNEVQVIATVVSVNPQVNPD 137

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G + D      + + + DE     +D  VAGT+
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPTQDELKESKLDLVVAGTE 193

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
           + +  ++ + ++  +SE+ M+ A+      +  ++  ++ ++ E+     ++ P     A
Sbjct: 194 AAVLMVESEAEL--LSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDA 251

Query: 558 IP 559
           + 
Sbjct: 252 LN 253


>gi|254479099|ref|ZP_05092451.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
 gi|214034948|gb|EEB75670.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
          Length = 328

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 202/323 (62%), Gaps = 3/323 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
            +  T E+E AGR L ++TG++A+Q++GA    YG+TVVL T    +  ++G DFFPLTV
Sbjct: 1   MEERTFEMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTV 60

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
            Y+ER Y++GKIPGG+++RE +P+E  IL +R+IDR IRPLF + Y+N+ QVI  V+  D
Sbjct: 61  EYEERLYSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVD 120

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSG 180
            ++ P +V+M+ +S AL +S +PF GP     V  ++G++V+NP  ++ + SL  L VSG
Sbjct: 121 PDAQPEIVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSG 180

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-K 239
           T+DA++MVE  A ++ E+ +LDAI++ H   K ++E I  + K        +   +   +
Sbjct: 181 TKDAIVMVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEIDKE 240

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
           LEE++     E +  +   PEK  R   +D ++++++ +F  E+   N  +I  V   I 
Sbjct: 241 LEEKVRAYATEKIYNALRTPEKKERNDNLDKVEQEVLEHFKDEYPD-NLADIDEVLYKIM 299

Query: 300 AKVVRTVMLDKKVRMDGRDSETV 322
            + +R ++ ++K+R+DGR  + +
Sbjct: 300 KEQMRKMIKEEKIRVDGRGLDDI 322



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 17/224 (7%)

Query: 323 RDISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS--LSGTQRNDFMMHYN 379
           R +  Q G + Q+ +G++    GDT  +V     ++E  + +D   L+          Y+
Sbjct: 13  RKLVVQTGKVAQQANGAAWVKYGDTVVLVTA-CASKEPREGIDFFPLTVEYEERL---YS 68

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE--SDGSSS 437
                 G + R G PS + I   RL  R I P+ P    +   +++++ +     D    
Sbjct: 69  IGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFP--EGYRNDVQVIATVLSVDPDAQPE 126

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + GSS+AL  + +P + P   +A+GLV     F+I       E  L H    V+GT 
Sbjct: 127 IVAMIGSSVALSISDIPFNGPTGSVAVGLV--DGKFVINPTYEQREKSLMH--LVVSGTK 182

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
             I  ++   K   + E  ++ A+  A +    I+  +  ++ E
Sbjct: 183 DAIVMVEAGAKE--VPEETILDAIVYAHQYIKQIVEFIEGIVKE 224


>gi|195341759|ref|XP_002037473.1| GM12088 [Drosophila sechellia]
 gi|194131589|gb|EDW53632.1| GM12088 [Drosophila sechellia]
          Length = 485

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/459 (36%), Positives = 251/459 (54%), Gaps = 24/459 (5%)

Query: 258 IPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR 317
             +K  R   +++++  ++    S         I   F      + R ++ ++ +R DGR
Sbjct: 14  THDKMSRDNAVNEVRSNVIDKVWSSFPDTEPSLIAEQFNQTSRTIFRELIFERGLRCDGR 73

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL-----SGTQRN 372
           D + +R+IS QV + +  HGS+LF RG TQ    V+L ++E    +DSL      G +  
Sbjct: 74  DYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAK 133

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +FM+HY F P ATGEV R+G   RRE+GHG LA R++ P LP    +P+T+R+ SE+ ES
Sbjct: 134 NFMLHYEFPPYATGEVGRIGPVGRRELGHGALAERSLLPTLPN--DYPFTVRLTSEVLES 191

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--------KDGDDFIILSDISGDED 484
           +GSSSMA+VCG SLALMDAGVP+S P AG+A+GLV        K   D+ IL+DI G ED
Sbjct: 192 NGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIED 251

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           ++G MD KVAGT  G TA+Q D+KI GI   +++ +LQ+A   +  IL+ MS+ + E R 
Sbjct: 252 YMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSKILDIMSEAIREPRK 311

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
              E  P  E + + P Q   +IG  G  ++ I  +TG  +   D+      + S A ++
Sbjct: 312 YRKECWPVSETVTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNAFAPSQAAMD 371

Query: 605 AARE-----MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVA 658
            A+E     M++      E   IY  ++ ++ D G  V         L+H SQL   ++A
Sbjct: 372 EAKELIEGYMVKERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPALLHNSQLDQRKIA 431

Query: 659 KTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
             S + ++ G  + VK    D   G ++LS KV+ Q  G
Sbjct: 432 HPSALNLEVGQEIQVKYFGRDPVSGFMRLSRKVL-QGPG 469



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 34/227 (14%)

Query: 28  DGAVLATYGETVVLATVVY-DRSLKDGQDFFP-----------LTVNYQERTYAVGKIPG 75
            G+ L   G+T V  TV    +      D                ++Y+   YA G++  
Sbjct: 92  HGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVG- 150

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
               R       E+    + +RS+ P     Y    ++   V++ +  SS  + S+   S
Sbjct: 151 ----RIGPVGRRELGHGALAERSLLPTLPNDYPFTVRLTSEVLESNGSSS--MASVCGGS 204

Query: 136 AALMLSGLPFEGPVVGAQVDYIN-----------GQYVLNP--RLDEDQGSLDLFVSGTQ 182
            ALM +G+P   P  G  +  +               +L     +++  G +D+ V+GT+
Sbjct: 205 LALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTR 264

Query: 183 DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
                ++ +     +   VV++++    +    +++ +S+  +   K
Sbjct: 265 KGFTAIQADLKIPGIPLKVVMESLQKATDAKSKILDIMSEAIREPRK 311


>gi|332141239|ref|YP_004426977.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551261|gb|AEA97979.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 344

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/309 (39%), Positives = 193/309 (62%), Gaps = 2/309 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG IARQ+  AVLA+  +T VL TVV  +  K  QDFFPLTVNY
Sbjct: 3   PITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLTVNY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA GKIPGG+ +RE RP+E E L +R+IDR IRPLF + +KNE QV++ VM  + +
Sbjct: 63  QEKAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSANPD 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
               ++SM+  SAAL +SG+PF GP+  A+V + NG+Y+LN R +E  +  LDL V+GT+
Sbjct: 123 IPTDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVVAGTE 182

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI-DSKDFSKLE 241
            AVLMVE EA+ LSE+ +L A++FGH + + V+ A+++ A     E        + + L+
Sbjct: 183 GAVLMVESEADVLSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTALK 242

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
           +++  + + ++  +  I +K  R   +  + +K +    +E    ++ E++ +  D+++ 
Sbjct: 243 DKVKALAEAEMTAAYQISDKLERKDGVTAVTEKALEAILAEDEEQDKKEVLDLLHDLESD 302

Query: 302 VVRTVMLDK 310
           VVR+ +L  
Sbjct: 303 VVRSRILSG 311



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 131/320 (40%), Gaps = 27/320 (8%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++    D  +++V  +G +E +   D           ++Y     A
Sbjct: 15  VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFP------LTVNYQEKAYA 68

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES--DGSSS 437
            G++      R G PS  E    RL  R I P+ P    F   +++V  +  +  D  + 
Sbjct: 69  AGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFP--EGFKNEVQVVVTVMSANPDIPTD 126

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           + ++ G+S AL  +G+P + P+    +G      +   + +   +E     +D  VAGT+
Sbjct: 127 IISMIGTSAALAISGIPFNGPIGAARVGF----SNGEYILNTRAEEQAESELDLVVAGTE 182

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
             +  ++ +  +  +SE  M+ A+         +++ +++  +E   +  ++ P  E  A
Sbjct: 183 GAVLMVESEADV--LSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTA 240

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +  D+++ +          I ++   K     DG   +   +L  I A  E       + 
Sbjct: 241 L-KDKVKALAEAEMTAAYQISDKLERK-----DGVTAVTEKALEAILAEDEEQDKKEVLD 294

Query: 618 EVNKIYKGQVVKVMDFGAFV 637
            ++ +    V   +  GA V
Sbjct: 295 LLHDLESDVVRSRILSGAHV 314


>gi|302852014|ref|XP_002957529.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
           nagariensis]
 gi|300257171|gb|EFJ41423.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
           nagariensis]
          Length = 830

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/441 (41%), Positives = 251/441 (56%), Gaps = 39/441 (8%)

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           F  ++++V+R+++L++ +R DGR    +R I+++ GLL RTHGS+LF RG+TQAI V TL
Sbjct: 337 FPSVESRVMRSLVLEEGIRADGRRVTDIRPIASRAGLLPRTHGSALFTRGETQAICVATL 396

Query: 355 GTREDEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           GT  D    D++            F + Y+F P + GE  R+G P RRE+GHG LA+RA+
Sbjct: 397 GTASDALRADTMRKAEEDDGGEGRFYLQYHFPPSSVGETGRVGGPGRRELGHGELAQRAL 456

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            P++P   QFPYT+R+ S ITES+GSSSMA+VCG  LAL DAGVPI +PVAGIAMGL+ +
Sbjct: 457 APIVPNQEQFPYTVRLESTITESNGSSSMASVCGGCLALQDAGVPILRPVAGIAMGLILE 516

Query: 470 ---------------GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
                              ++LSDI G ED LG MDFKVAG    ITA QMD+K+ GI+ 
Sbjct: 517 PAAQNPDPESGSGSSSPRHVVLSDILGSEDALGDMDFKVAGDTDSITAFQMDIKVEGITL 576

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR-------------VEIMAIPPD 561
            IM  AL QA+ GR HIL +M +       +L    PR             +    + P 
Sbjct: 577 EIMSSALNQAREGRRHILQQMERCSPPPAGRLNAHAPRLLRTMVGGGPRGELMCEEVDPA 636

Query: 562 QIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +I  +IG GG+ I+ + E TG   + +D+DG V + S S      A E+I  +   PE  
Sbjct: 637 KIGAIIGTGGRTIKQLKEVTGVTAIELDEDGRVNVVSPSQEAAARAMELINLLVSDPEPG 696

Query: 621 KIYKGQ-VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + + + V  V  FG FV  C  R GLVH+S+L+    +    VV  GD + V ++  D 
Sbjct: 697 TVLRQRAVTSVAAFGCFVELCPGRQGLVHVSELADPPPSDVGSVVAVGDKIDVMVMSCDG 756

Query: 680 RGKIKLSMKVV---DQNTGKP 697
            GK+ LS + V   DQ  G P
Sbjct: 757 -GKVALSRRAVALLDQGEGYP 776



 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/237 (35%), Positives = 136/237 (57%), Gaps = 4/237 (1%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
           +AT GET++ AT     S      F PLTVNY ER  A G+  GGY++R+ RP ++E+L+
Sbjct: 1   MATCGETMIYATACCSASPTGDGSFLPLTVNYAERFSAAGRTSGGYVKRDGRPRDSEVLV 60

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           SR++DR +RP+F K + NETQV+  V+ +D   +P  +++ AA+AAL++S +P +  V G
Sbjct: 61  SRLVDRPLRPMFGKGWANETQVLEWVLSYDGIHNPEPIAITAAAAALLISDIPLKKAVAG 120

Query: 152 AQVDYINGQ-YVLNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHN 209
            +V  +  + YV+NP +++ +   LDL V+GT+DA+LM+E   + L+E+ +++A+  G  
Sbjct: 121 VRVGLLPDEGYVVNPTVEQMKVSRLDLMVAGTRDAILMIEGFCDFLTEEQMIEALAVGSQ 180

Query: 210 ECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFIP-EKYVR 264
               +   +   AK   K             LEE +  ++   LR +      K VR
Sbjct: 181 AITSLCLQMEDWAKKVGKPKRTESVVSVPDDLEERVMALVGPQLREAYRTSLSKEVR 237



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 44/243 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV---YDRSLKDGQDFFP---------LTV 61
           RP+    G + R + G+ L T GET  +          +L+                  +
Sbjct: 365 RPIASRAGLLPR-THGSALFTRGETQAICVATLGTASDALRADTMRKAEEDDGGEGRFYL 423

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQ 119
            Y     +VG+       R   P   E+    +  R++ P+    + +    ++   + +
Sbjct: 424 QYHFPPSSVGETG-----RVGGPGRRELGHGELAQRALAPIVPNQEQFPYTVRLESTITE 478

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL------------ 167
            +  SS  + S+     AL  +G+P   PV G  +  I      NP              
Sbjct: 479 SNGSSS--MASVCGGCLALQDAGVPILRPVAGIAMGLILEPAAQNPDPESGSGSSSPRHV 536

Query: 168 --------DEDQGSLDLFVSGTQDAVLMVELE--ANQLSEDVVLDAIIFGHNECKPVIEA 217
                   ++  G +D  V+G  D++   +++     ++ +++  A+       + +++ 
Sbjct: 537 VLSDILGSEDALGDMDFKVAGDTDSITAFQMDIKVEGITLEIMSSALNQAREGRRHILQQ 596

Query: 218 ISK 220
           + +
Sbjct: 597 MER 599



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 13/174 (7%)

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATV 441
           + G V R G P   E+   RL  R + P+      +    +++  +   DG  +     +
Sbjct: 43  SGGYVKRDGRPRDSEVLVSRLVDRPLRPMF--GKGWANETQVLEWVLSYDGIHNPEPIAI 100

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             ++ AL+ + +P+ K VAG+ +GL+ D + +++   +      +  +D  VAGT   I 
Sbjct: 101 TAAAAALLISDIPLKKAVAGVRVGLLPD-EGYVVNPTVEQM--KVSRLDLMVAGTRDAIL 157

Query: 502 AMQMDMKIGGISENIMVMALQQAKRG----RLHILNEMSKVLSESRLQLGEFTP 551
            ++       ++E  M+ AL    +      L + +   KV    R +     P
Sbjct: 158 MIEGFCDF--LTEEQMIEALAVGSQAITSLCLQMEDWAKKVGKPKRTESVVSVP 209


>gi|87311732|ref|ZP_01093847.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
 gi|87285516|gb|EAQ77435.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
          Length = 385

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/341 (51%), Positives = 233/341 (68%)

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           GT  DEQ VD L       FM+ YNF   + GE   +  P RREIGHG LA R++ PVLP
Sbjct: 2   GTSRDEQRVDGLQEEYAKKFMLDYNFPSYSVGECRPIRGPGRREIGHGALAERSVKPVLP 61

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
              +FPYT+R++S+I ES+GSSSMA+VC ++L LM AGVPIS PVAGI++GLVK+GDDFI
Sbjct: 62  GPDEFPYTIRVISDILESNGSSSMASVCAATLGLMAAGVPISNPVAGISVGLVKEGDDFI 121

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L+DI GDEDH G MDFK+AGT +GIT +Q+D+KI GIS  I+   L+Q++  R+ IL  
Sbjct: 122 LLTDILGDEDHFGDMDFKIAGTQNGITGIQLDLKIAGISAEIIKATLEQSRIARIEILRT 181

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M   +S  + +   + PR+    I P++I  +IG GGK IRGI E+TGA +++ +DGTV 
Sbjct: 182 MLTTISAPKDEPSIWAPRLLSTKINPEKIGLLIGPGGKTIRGIQEETGATIDVQEDGTVL 241

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +ASS+L   EAA   +++IT   EV KIY+G+V  V DFGAFV     RDGL HIS+LS 
Sbjct: 242 VASSTLEWAEAALARVQAITGEVEVGKIYEGRVTSVKDFGAFVEILPGRDGLCHISELSN 301

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           E V   +DVVK GD + VK+L  D+  ++KLS K +D   G
Sbjct: 302 EYVGNVNDVVKVGDMLKVKVLLVDEHDRVKLSHKAIDAPEG 342



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIIN 116
             ++Y   +Y+VG+      R    P   EI    + +RS++P+      +    +VI +
Sbjct: 21  FMLDYNFPSYSVGEC-----RPIRGPGRREIGHGALAERSVKPVLPGPDEFPYTIRVISD 75

Query: 117 VMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQ 171
           +++ +  SS  + S+ AA+  LM +G+P   PV G  V  +     ++L   +   ++  
Sbjct: 76  ILESNGSSS--MASVCAATLGLMAAGVPISNPVAGISVGLVKEGDDFILLTDILGDEDHF 133

Query: 172 GSLDLFVSGTQDAVLMVELE 191
           G +D  ++GTQ+ +  ++L+
Sbjct: 134 GDMDFKIAGTQNGITGIQLD 153


>gi|167536393|ref|XP_001749868.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771583|gb|EDQ85247.1| predicted protein [Monosiga brevicollis MX1]
          Length = 629

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 167/567 (29%), Positives = 276/567 (48%), Gaps = 38/567 (6%)

Query: 15  PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL--TVNYQERTYAVGK 72
           P     G +A Q+DGAV                          PL   V+Y+ER  AV  
Sbjct: 50  PATFTCGALAYQADGAVTLDQ---------ACPLHSTPSPFLTPLLQQVDYRERGTAVNL 100

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           IP  + RRE    + E L++R++DRS+RPL        TQ+ + ++       P V S+ 
Sbjct: 101 IPKSFHRREGGERDRETLVARLVDRSLRPLVPSDVAASTQMTVKLLASQARMEPTVQSIE 160

Query: 133 AASAALMLSGLPFEGPVVGAQVD----------YINGQYVLNPRLDEDQGSLD-LFVSGT 181
           AASAALM+S + + GPV   +V               + ++NP   E    +  L  SG 
Sbjct: 161 AASAALMVSDISWHGPVAAVRVGVRKALEVASDDEPYELLINPDHKETAECVGVLLYSGV 220

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA--KEPIVIDSKDFSK 239
           Q   +M++ E  +L    +  A+   H   +P +EA  +L +     K+P++ +      
Sbjct: 221 QAGAVMIDFEGAELPLPALKRALRAAHQHIQPSLEAQRELGERAGRTKKPLLREPLALGI 280

Query: 240 LEEEMSQMIKEDLRV-SCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDI 298
           +   ++Q ++  L V    +  K  R ++++ +  ++ +    +        +    E++
Sbjct: 281 MAAAITQGLESVLEVLRMHMLSKRDRIERLNSITDQLEADLLQQFPMAGLRLVDDALEEV 340

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             + +R ++L +  R+DGRD + V+ + A + L    HG+SLF RG+TQ     TLG R+
Sbjct: 341 LKEALRQLVLSEDTRIDGRDFDEVQAVQAAINLYPELHGNSLFQRGETQVFCTATLGDRD 400

Query: 359 DEQYVDSLS-----GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
             + +D +       + +  F   Y F   A  ++       RRE GHG LA RA+  ++
Sbjct: 401 AVKRLDEIEVAVAGLSPQKSFFFDYEFPAYAINKIRVRRGQMRRETGHGSLAERALGRMI 460

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD- 472
                +  T+R+ S++T S GSSSMA+VCG SLA+MDAGVP+  PVAG++ GLV   D+ 
Sbjct: 461 DP--GYENTVRVTSQVTSSFGSSSMASVCGGSLAMMDAGVPLRAPVAGLSCGLVGYTDEE 518

Query: 473 -----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
                + +L+D+ G ED  G MD K+A T SG+ A+Q D ++ GIS +++  A+Q+   G
Sbjct: 519 GQLTKYQLLTDLKGFEDIYGAMDLKMASTQSGVNAIQFDTELRGISLDVLEEAMQRTFDG 578

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVE 554
           +  +L EM+  +  +R       P   
Sbjct: 579 KQVVLKEMNAAMPATRTDPKACHPMTC 605


>gi|62531249|gb|AAH92603.1| Pnpt1 protein [Rattus norvegicus]
          Length = 452

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 157/421 (37%), Positives = 245/421 (58%), Gaps = 21/421 (4%)

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           EI+  F  +  +V R+++L++  R DGRD  ++R+IS +V + +  HGS+LF RG TQ +
Sbjct: 3   EIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVL 62

Query: 350 VVVTLGTRED----EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA 405
             VT  + E     +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA
Sbjct: 63  CTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALA 122

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
            +A+ PV+P    FP+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+G
Sbjct: 123 EKALCPVIP--KDFPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVG 180

Query: 466 LVK-------DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           LV        + +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++
Sbjct: 181 LVTKSNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIM 240

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            A+QQA   +  IL  MSK +S+ R    E  P VE + +P  +    IG GG  ++ + 
Sbjct: 241 EAIQQATVAKREILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQ 300

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDF 633
            +TG  ++  D+ T  I + +   +  AR+ I  I         E   +Y   + ++ D 
Sbjct: 301 AETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDT 360

Query: 634 GAFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           G  V         L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+
Sbjct: 361 GVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 420

Query: 691 D 691
            
Sbjct: 421 Q 421



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 38/221 (17%)

Query: 28  DGAVLATYGETVVLATVVYDR-SLKDGQDFFP----------LTVNYQERTYAVGKIPGG 76
            G+ L   G+T VL TV +D        D               ++Y+   YA  +    
Sbjct: 49  HGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETG-- 106

Query: 77  YLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
              + +     E+    + ++++ P+  K +    +V   V++ +  SS  + S    S 
Sbjct: 107 ---KVTGVNRRELGHGALAEKALCPVIPKDFPFTIRVTSEVLESNGSSS--MASACGGSL 161

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---------------GSLDLFVSGT 181
           ALM +G+P    V G  V  +      NP   E +               G +D  ++GT
Sbjct: 162 ALMDAGVPISSAVAGVAVGLVTKS---NPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 218

Query: 182 QDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
              +  ++ +     +   ++++AI       + +++ +SK
Sbjct: 219 NKGITALQADIKLPGVPVKIIMEAIQQATVAKREILQTMSK 259


>gi|254479104|ref|ZP_05092456.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034953|gb|EEB75675.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 333

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 164/322 (50%), Positives = 230/322 (71%)

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           M HYNF P + GEV  +  P RREIGHG LA RA+ PV+P   +FPYT+R+VSE+  S+G
Sbjct: 1   MHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSNG 60

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           S+S A+VCGS+LALMDAGVPI  PVAGIAMGL+K+ D+ +IL+DI G ED LG MDFKVA
Sbjct: 61  STSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLILTDIQGIEDFLGDMDFKVA 120

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
           GT+ G+TA+QMD+KI GI  +I+ MAL++A++ RL++L +M +V+ E R +L ++ PRV 
Sbjct: 121 GTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIKEPRKELSKYAPRVV 180

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            M + P++IR++IG  GK I  I+ +TG K++I++DG + I + +L   E A++MI +IT
Sbjct: 181 RMVVNPEKIRDIIGPAGKTITKIISETGVKIDIEEDGRLYITAPNLEAGERAKQMIEAIT 240

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV  IY G+V+++  FGAFV     ++GLVHIS LS +RV +  DVVK GD + VK+
Sbjct: 241 KDIEVGGIYLGKVLRIAPFGAFVEIAPGKEGLVHISNLSKKRVRRVEDVVKVGDNILVKV 300

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
            + D  G+I LS K    +  +
Sbjct: 301 TEIDKLGRIVLSRKDAMPDEEE 322



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 80/179 (44%), Gaps = 20/179 (11%)

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQ 119
           +Y    Y+VG++     R    P   EI    + +R++ P+    + +    +++  V+ 
Sbjct: 3   HYNFPPYSVGEV-----RPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLS 57

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPR----LDEDQGSL 174
            +  +S    S+  ++ ALM +G+P + PV G  +  I  +  VL       +++  G +
Sbjct: 58  SNGSTS--QASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEVLILTDIQGIEDFLGDM 115

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNE----CKPVIEAISKLAKMCAK 227
           D  V+GT+  V  ++++     +  D++  A+           + ++E I +  K  +K
Sbjct: 116 DFKVAGTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIKEPRKELSK 174


>gi|87311731|ref|ZP_01093846.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
 gi|87285515|gb|EAQ77434.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
          Length = 350

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/344 (32%), Positives = 193/344 (56%), Gaps = 8/344 (2%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVL-ATVVYDRSLKDGQDFFPLT 60
            ++  VE +     L  ETG +A+Q+ GA L  YG+TVVL A        + G DFFPLT
Sbjct: 1   MEIIRVEKQIGKLTLSFETGYLAKQAAGACLTQYGDTVVLTAAATGPS--RPGTDFFPLT 58

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
            +Y+ERT A GK PGG+++RE RPT  EIL  R++DR IRP+F K +++E QV+ NV+  
Sbjct: 59  CDYRERTAAAGKFPGGFIKREGRPTTKEILTCRLMDRPIRPMFPKGFRDEVQVMANVLSS 118

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D ++   V++M  A+ AL LS LPF+GP+   ++ +IN ++V+ P  +E ++  LDL +S
Sbjct: 119 DRQNDGDVLAMNGAAVALGLSSLPFDGPLAAVRLAHINDEFVVFPTHEELEESDLDLIIS 178

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           G +++VLM+E  + ++ ED++L AI   H   K + +   +  +    +    ++   + 
Sbjct: 179 GNKESVLMIEGFSREMPEDIMLKAIETCHEYIKQICDMQLEFLEKAGAKESNYEAAAPNP 238

Query: 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSE---HSSWNEGEIVSVFE 296
           + + +      D + +     K  R + +  LK+++ +    +     +  +      + 
Sbjct: 239 IYQTLVDRYYNDFKSAKQTSGKQNRAEAVKALKERVKAEMIPDPNAEDAITDPVFKEAWH 298

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
           D+  ++VR ++L    R DGRD  T+R I  +V +L R HGS++
Sbjct: 299 DLDERIVRDLILA-GTRPDGRDGNTLRAIECKVDVLPRVHGSAV 341



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 14/221 (6%)

Query: 325 ISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           +S + G L ++  G+ L   GDT  +     G          L+   R        F   
Sbjct: 15  LSFETGYLAKQAAGACLTQYGDTVVLTAAATGPSRPGTDFFPLTCDYRERTAAAGKFP-- 72

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS--SMATV 441
             G + R G P+ +EI   RL  R I P+ P    F   +++++ +  SD  +   +  +
Sbjct: 73  -GGFIKREGRPTTKEILTCRLMDRPIRPMFP--KGFRDEVQVMANVLSSDRQNDGDVLAM 129

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
            G+++AL  + +P   P+A + +  +   D+F++    + +E     +D  ++G    + 
Sbjct: 130 NGAAVALGLSSLPFDGPLAAVRLAHIN--DEFVVFP--THEELEESDLDLIISGNKESVL 185

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            ++   +   + E+IM+ A++        I +   + L ++
Sbjct: 186 MIEGFSRE--MPEDIMLKAIETCHEYIKQICDMQLEFLEKA 224


>gi|224372889|ref|YP_002607261.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
           AmH]
 gi|223588442|gb|ACM92178.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
           AmH]
          Length = 451

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 147/450 (32%), Positives = 231/450 (51%), Gaps = 39/450 (8%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           VE+    R  K    ++A+Q++ +V    G TV+LAT+ Y+      +DF PL V Y E+
Sbjct: 5   VELNINNRKQKFVLNKVAKQANSSVWFEDGNTVMLATLTYNPDEMVEEDFVPLVVQYVEK 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YAVGKIP G+++RE +P + E L +R++DRS+RPLF K Y   T + +  +  D +S  
Sbjct: 65  AYAVGKIPAGFVKREQKPGDFETLTARIVDRSLRPLFPKEYGYNTVLTVMALSADEDSDL 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
              +M AA+A + LS LPF   V G +   I G+ ++NP L + ++G  +LFV+GT+D +
Sbjct: 125 QTAAMNAAAACMYLSDLPFAKMVYGVRATRIKGELIINPTLSQLEEGDFNLFVTGTKDEL 184

Query: 186 LMVELEA------------------------------NQLSEDVVLDAIIFGHNECKPVI 215
           LM+E  +                              N++ ED +++ +       K   
Sbjct: 185 LMIEFASQGQEEIEIIPVDDIMLDGVPVENTIVKYRINEIKEDELVEILEKVQEAIKKGA 244

Query: 216 EAISKLAKMCAKEPIVIDSK---DFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
            A  +  K   K+PI  + +   D ++  E +      +LR       K  R   +    
Sbjct: 245 SAYEEALKDFKKDPIDFEERKEADITEYIELIRSKYSNELREIIKHLSKSERDYLLKQFA 304

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
           +K+ +    E    N   I+   + ++ ++VR ++L++ +R DGR  + +R IS +  LL
Sbjct: 305 RKIAAALDKEEEFEN---ILKAVKQVKREIVRGMILNEGIRADGRKLDEIRPISIETNLL 361

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN--DFMMHYNFLPCATGEVSR 390
            R HGS LF RG TQA+ V T G   D Q   +L+  +     FM+HYNF   + GE  R
Sbjct: 362 PRAHGSCLFTRGQTQALAVATRGGDMDAQVYGNLTDKEEKLEKFMLHYNFPAFSVGEAER 421

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           +G PSRRE+GHG LA+RAI P+L  +   P
Sbjct: 422 LGPPSRRELGHGNLAKRAIEPLLDLSLMKP 451



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 12/240 (5%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           + ++ + S  F  G+T  +  +T     DE   +             Y       G V R
Sbjct: 21  VAKQANSSVWFEDGNTVMLATLTYNP--DEMVEEDFVPLVVQYVEKAYAVGKIPAGFVKR 78

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
              P   E    R+  R++ P+ P+   +   L +++   + D     A +  ++  +  
Sbjct: 79  EQKPGDFETLTARIVDRSLRPLFPKEYGYNTVLTVMALSADEDSDLQTAAMNAAAACMYL 138

Query: 451 AGVPISKPVAGIAMGLVKDG----------DDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + +P +K V G+    +K            ++      ++G +D L  ++F   G +   
Sbjct: 139 SDLPFAKMVYGVRATRIKGELIINPTLSQLEEGDFNLFVTGTKDELLMIEFASQGQEEIE 198

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
                D+ + G+     ++  +  +     ++  + KV    +     +   ++     P
Sbjct: 199 IIPVDDIMLDGVPVENTIVKYRINEIKEDELVEILEKVQEAIKKGASAYEEALKDFKKDP 258


>gi|114765824|ref|ZP_01444917.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541823|gb|EAU44860.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 250

 Score =  336 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 124/243 (51%), Positives = 172/243 (70%), Gaps = 7/243 (2%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++    ++W    L LE+G++ARQ+DG V+AT GET V+A V + +  K GQDFFPLT
Sbjct: 1   MFNITKKSMQWGEETLTLESGKVARQADGTVIATLGETSVMANVTFAKEPKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+ YA GK+PGG+ +RE+RPTE E L +R+IDR IRPLF   +K+E  V+  V+ H
Sbjct: 61  VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-------S 173
           DL + P +V+M+AASAAL +SG+PF GP+ GA+V + +G YVLNP +D+ QG        
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGARVGFEDGDYVLNPTVDDMQGLRNNPEQR 180

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
           LDL V+GT+DAV+MVE EA +L+E+ +L A+ F H + +PVI+ I  LA+ CAKEP    
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEDCAKEPFDFQ 240

Query: 234 SKD 236
             D
Sbjct: 241 PPD 243



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 24/232 (10%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV-- 388
           + ++  G+ +   G+T  +  VT      E       G       +HY     A G+V  
Sbjct: 23  VARQADGTVIATLGETSVMANVTFA---KEPKP----GQDFFPLTVHYQEKYYAAGKVPG 75

Query: 389 ---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--GSSSMATVCG 443
               R   P+ +E    RL  R I P+      F + + ++  +   D      +  +  
Sbjct: 76  GFFKREARPTEKETLTARLIDRPIRPLFVP--GFKHEVLVMCTVLSHDLVNDPDIVAMIA 133

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFI---ILSDISGDEDH-LGHMDFKVAGTDSG 499
           +S AL  +GVP   P+AG  +G   +  D++    + D+ G  ++    +D  VAGT   
Sbjct: 134 ASAALTISGVPFMGPIAGARVGF--EDGDYVLNPTVDDMQGLRNNPEQRLDLVVAGTKDA 191

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
           +  ++ +     ++E  M+ A+  A      +++ +  +  +   +  +F P
Sbjct: 192 VMMVESEAYE--LTEEEMLGAVTFAHEQIQPVIDLIVSLAEDCAKEPFDFQP 241


>gi|73969676|ref|XP_865517.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 3 [Canis familiaris]
          Length = 367

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 183/348 (52%), Gaps = 11/348 (3%)

Query: 41  LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100
           + T V        Q F PL V+Y+++  A G+IP  YLRRE   ++ E+L SR+IDRSIR
Sbjct: 1   MVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVIDRSIR 59

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF   Y  +TQV+ N++  D  + P V+++  AS AL LS +P+ GP+   ++  I+G+
Sbjct: 60  PLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGE 119

Query: 161 YVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            V+NP   E   S L+L V+G  +  ++M+E  A  + +     AI  G    + +I+ I
Sbjct: 120 CVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAENILQQDFCHAIKVGVKYTQQIIQGI 179

Query: 219 SKLAKMCAKEPIVIDS--KDFSKLEEEMSQMIKEDLRV--SCFIPEKYVRCKQIDDLKKK 274
            +L K                 ++ E + ++  E L    + +  +K  R + I+ ++  
Sbjct: 180 QQLVKEIGVTKRTPQKLFTPSPEIVEHIHKLTMERLYAVFTDYEHDKISRDEAINKIRLD 239

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
                  +    +  EI+  F  +  +V R+++L++  R DGRD  ++R+I+ +V L + 
Sbjct: 240 TEEQLKEKFPEADTYEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNINCEVDLFKT 299

Query: 335 THGSSLFIRGDTQAIVVVTLGTRE----DEQYVDSLSGTQRNDFMMHY 378
            HGS+LF RG TQ    VT  + E     ++ + +++G +  +FM+HY
Sbjct: 300 LHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHY 347



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATVCGSSL 446
            R    S +E+   R+  R+I P+ P  A + Y  +++  +   DG     +  + G+S+
Sbjct: 38  RREVGSSDKEVLTSRVIDRSIRPLFP--AGYFYDTQVLCNLLAVDGVNEPDVLAINGASV 95

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQM 505
           AL  + +P + P+  + +G++    D   + + +  E     ++  VAG     I  M+ 
Sbjct: 96  ALSLSDIPWNGPIGAVRIGMI----DGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEA 151

Query: 506 DMKI 509
             + 
Sbjct: 152 SAEN 155


>gi|226329677|ref|ZP_03805195.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
 gi|225202863|gb|EEG85217.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
          Length = 267

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 118/263 (44%), Positives = 172/263 (65%), Gaps = 2/263 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+     T V  TVV  + +K GQDFFPLT
Sbjct: 1   MLNPTVRKFQYGQHTVSLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKAGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQER+YA G+IPG + RRE RP E E LI+R+IDR +RPLF + + NE Q++  V+  
Sbjct: 61  VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIVATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS 179
           + + +P +V+M+ ASA L LSG+PF GP+ GA+V +I+GQYVLNP +DE +   LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGGARVGFIDGQYVLNPTVDELKVSKLDLVVA 180

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           GT  AVLMVE EA+ LSE+ +L A++FGH++ + VIE I+ L     KE      +  ++
Sbjct: 181 GTAGAVLMVESEADLLSEEEMLGAVVFGHDQQQVVIENINALVAEVGKEKWDWAPEAINQ 240

Query: 240 -LEEEMSQMIKEDLRVSCFIPEK 261
            L + ++Q+ +  +  +  I EK
Sbjct: 241 TLHDRIAQLAQARIGDAYRITEK 263



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 16/223 (7%)

Query: 368 GTQRNDFMMHYNFLPCATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           G       ++Y     A G +      R G P   E    RL  R + P+ P    F   
Sbjct: 53  GQDFFPLTVNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFP--EGFLNE 110

Query: 423 LRIVSEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           ++IV+ +   +   +  +  + G+S  L  +GVP + P+ G  +G +    D   + + +
Sbjct: 111 IQIVATVVSVNPQVNPDIVAMIGASAVLALSGVPFNGPIGGARVGFI----DGQYVLNPT 166

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            DE  +  +D  VAGT   +  ++ +  +  +SE  M+ A+      +  ++  ++ +++
Sbjct: 167 VDELKVSKLDLVVAGTAGAVLMVESEADL--LSEEEMLGAVVFGHDQQQVVIENINALVA 224

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           E   +  ++ P      +  D+I  +          I E+T  
Sbjct: 225 EVGKEKWDWAPEAINQTLH-DRIAQLAQARIGDAYRITEKTRT 266


>gi|218185968|gb|EEC68395.1| hypothetical protein OsI_36554 [Oryza sativa Indica Group]
          Length = 485

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 115/288 (39%), Positives = 173/288 (60%), Gaps = 3/288 (1%)

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ 182
            +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT 
Sbjct: 97  VNPEIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTA 156

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LE 241
            AVLMVE EA+ LSED +L A++FGH++ + VIE I+ L     K      +   ++ L 
Sbjct: 157 GAVLMVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNEALH 216

Query: 242 EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAK 301
             ++++ +  L  +  I EK  R  Q+D +K  +V    ++  + + GEI  +   ++  
Sbjct: 217 ARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLAQDETLDAGEIQDILGTVEKN 276

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  D Q
Sbjct: 277 VVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 336

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVS-RMGAPSRREIGHGRLARRA 408
            +D L G + + F+ HYNF P + GE   R   P + E+   +   +A
Sbjct: 337 NLDELMGEKTDSFLFHYNFPPYSVGETGMREIDPKKAEVALQQRYDKA 384



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           +  +  + G+S AL  +G+P + P+    +G + D      + + + DE     +D  VA
Sbjct: 98  NPEIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPTTDELKESRLDLVVA 153

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           GT   +  ++ +  +  +SE+ M+ A+      +  ++  ++ +++E+
Sbjct: 154 GTAGAVLMVESEADV--LSEDQMLGAVVFGHDQQQVVIENINALVAEA 199


>gi|217032224|ref|ZP_03437722.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
 gi|216946095|gb|EEC24706.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
          Length = 382

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 157/391 (40%), Positives = 223/391 (57%), Gaps = 19/391 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +++  K+R D R  E VR I  +  LL   H S LF RG TQ++VV  LGT  D Q  +S
Sbjct: 1   MIIQDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHES 60

Query: 366 LSGTQ--RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           L      +  FM HYNF P   GE S +GA SRRE+GHG LA+RA+   +    Q    +
Sbjct: 61  LEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ---VI 117

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+AMG+V +G D  ILSDISG E
Sbjct: 118 RLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDISGLE 177

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D  G MDFK+AG   GITAMQMD K+ GI   ++  AL QAK  R HIL  M +   +  
Sbjct: 178 DAEGDMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEAKEKIV 237

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           +      P  EI  + PD+I  +IG GG+VI+ IVE+   K++++          +   +
Sbjct: 238 INFSHL-PTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKEHV 296

Query: 604 EAAREMIRSITDVPE-------VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
              +E I +     +       ++++ + QV +++DFGAF+      +GL+    +   +
Sbjct: 297 LKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDRCQ 356

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           V     V+KEGD++  +++ F ++GKI L +
Sbjct: 357 V-----VLKEGDSIRCRVISF-NKGKIALDL 381



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 128/330 (38%), Gaps = 56/330 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--------------YDRSLKDGQDFFPL 59
           RP+ +E+  +   +  ++L T G+T  L   V              +   +K+   F   
Sbjct: 18  RPILIES-DLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAPIKERFMF--- 73

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
             +Y    + VG+            +  E+    +  R++        KN+ QVI  V  
Sbjct: 74  --HYNFPPFCVGEASSI-----GATSRRELGHGNLAKRALETS----IKNKEQVIRLV-S 121

Query: 120 --HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNP--RLDEDQG 172
              +   S  + S+ A S AL  SG+     V G  +  +       +L+    L++ +G
Sbjct: 122 EILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEG 181

Query: 173 SLDLFVSGTQDAVLMVELE--ANQLSEDVVLDAIIFGHNECKPVIEAISKLA-KMCAKEP 229
            +D  ++G  + +  ++++   + +  +V+  A++      K +++ + +   K+     
Sbjct: 182 DMDFKIAGNLEGITAMQMDTKMSGIRLEVLYQALLQAKEARKHILKIMHEAKEKIVINFS 241

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV----------------RCKQIDDLKK 273
            +  ++ F+ + +++ ++I +  RV   I EK+                   + +   K+
Sbjct: 242 HLPTTEIFNVVPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKEHVLKTKE 301

Query: 274 KMVSYFSSEHSSWNEGEIVSVFEDIQAKVV 303
            +++Y  S      +  I  V E    ++V
Sbjct: 302 FILNYLHSLDQELEQYAIDEVLEAQVKRIV 331


>gi|330982939|gb|EGH81042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 275

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 118/275 (42%), Positives = 177/275 (64%), Gaps = 3/275 (1%)

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFVSGTQDAVLMV 188
           M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V+GT +AVLMV
Sbjct: 1   MIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMV 60

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK-DFSKLEEEMSQM 247
           E EA +L+ED +L A++F H+E + VI AI +LA   AK       K + ++L   +   
Sbjct: 61  ESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEATELLSAIRSE 120

Query: 248 IKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVM 307
             E +  +  I  K  R  ++ +LK ++V+  + E  S +  E+ + F +I+ + VR  +
Sbjct: 121 FGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEGSPSASEVKAAFGEIEYRTVRENI 180

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++ K R+DGRD+ TVR ++ +VG+L +THGS+LF RG+TQA+VV TLGT  D Q +D+L 
Sbjct: 181 VNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLE 240

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
           G +++ FM+HYNF P + GE  RMG   RREIGHG
Sbjct: 241 GEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHG 275



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-----DGQDFFPLTVNYQER 66
           RPL +E G + + + G+ L T GET  L        R  +     +G+   P  ++Y   
Sbjct: 196 RPLNIEVGVLPK-THGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFP 254

Query: 67  TYAVGKIP--GGYLRRESR 83
            ++VG+    GG  RRE  
Sbjct: 255 PFSVGECGRMGGAGRREIG 273



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + G+S AL  +G+P   PV    +   +       L + + ++     +D  VAGT   +
Sbjct: 1   MIGTSAALAISGIPFDGPVGAARVAFHESTG---YLLNPTYEQLQASSLDMVVAGTSEAV 57

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
             ++ + K   ++E+ M+ A+  A      ++N + ++ +E+      + P+
Sbjct: 58  LMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPK 107


>gi|330981096|gb|EGH79199.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 288

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 160/280 (57%), Positives = 208/280 (74%)

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            +LP    FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVP+  PVAGIAMGLVK+G
Sbjct: 1   AMLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEG 60

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + F  L+DI GDEDHLG MDFKVAGT  G+TA+QMD+KI GI+E IM +AL QA   RL+
Sbjct: 61  EKFANLTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLN 120

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL +M++++ +SR +L    P +  M I  D+IR+VIG GG  IR I E+T A ++I+DD
Sbjct: 121 ILGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDD 180

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G++KI   S    EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS
Sbjct: 181 GSIKIFGESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHIS 240

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            LS  RV K +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 241 MLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 280



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 32/231 (13%)

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSLDLFVSGTQ 182
           + S+  AS ALM +G+P + PV G  +  +  G+   N       ++  G +D  V+GT 
Sbjct: 28  MASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFANLTDILGDEDHLGDMDFKVAGTS 87

Query: 183 DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
             V  ++++     ++E+++  A+         ++  ++++      E            
Sbjct: 88  KGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPT----- 142

Query: 241 EEEMSQMIKEDLRVSCFIPEKYVRC------KQIDDLKKKMVSYFSSEHSSWNE--GEIV 292
                        ++  I    +R         I  + ++  +    E     +  GE  
Sbjct: 143 ------------MIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESK 190

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
              E  + +V+      +  ++     E + D  A V +L    G      
Sbjct: 191 EAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISM 241


>gi|289676029|ref|ZP_06496919.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 224

 Score =  297 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/224 (48%), Positives = 151/224 (67%), Gaps = 3/224 (1%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING-QYVLNPRLDEDQ-GSLDLFV 178
             +  P + +M+  SAAL +SG+PF+GPV  A+V +     Y+LNP  ++ Q  SLD+ V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           +GT +AVLMVE EA +L+ED +L A++F H+E + VI AI +LA
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELA 224



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 21/221 (9%)

Query: 325 ISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           ++ + G + R   G+ L    D  +++V  +G ++ +      +G       +HY     
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQAD------AGKGFFPLSVHYQEKTY 68

Query: 384 ATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--GSS 436
           A G++      R G PS +E    RL  R I P+ P    F   +++V  +  +      
Sbjct: 69  AAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFP--EGFMNEVQVVCTVVSTSKKIDP 126

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
            +A + G+S AL  +G+P   PV    +   +       L + + ++     +D  VAGT
Sbjct: 127 DIAAMIGTSAALAISGIPFDGPVGAARVAFHESTG---YLLNPTYEQLQASSLDMVVAGT 183

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
              +  ++ + K   ++E+ M+ A+  A      ++N + +
Sbjct: 184 SEAVLMVESEAKE--LTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|3970797|emb|CAA74099.1| polynucleotide phosphorylase [Staphylococcus aureus]
          Length = 277

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 136/273 (49%), Positives = 187/273 (68%)

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           A+ V TL    + Q +D L       F+ HYNF   + G   R G+P RREIGHG L  R
Sbjct: 1   ALSVCTLAPLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGER 60

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
           A+  ++P    FPYT+R+V+E+ ES+GSSS A++C  +LALMDAGVPI  PVAGIAMGLV
Sbjct: 61  ALAQIIPSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLV 120

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            DG+++ IL+DI G EDHLG MDFKVAGT  GITA+QMD+KI GI+E I+  AL QAK+ 
Sbjct: 121 SDGENYTILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKA 180

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+ IL E++  ++  R +L ++ P++E++ I P +I++VIG GG+ I  I+++TG K++I
Sbjct: 181 RMEILEELTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDI 240

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D DG V IASS    I+ A ++I  +T   EV 
Sbjct: 241 DQDGNVSIASSDAEMIKKAIKIIEELTKEVEVT 273



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 80/183 (43%), Gaps = 16/183 (8%)

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQ 119
           +Y    ++VG        R   P   EI    + +R++  +    + +    +++  V++
Sbjct: 30  HYNFPQFSVGSTG-----RAGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVAEVLE 84

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPR----LDEDQGSL 174
            +  SS    S+ A + ALM +G+P + PV G  +  + +G+          L++  G +
Sbjct: 85  SNGSSS--QASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYTILTDIQGLEDHLGDM 142

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           D  V+GT+D +  ++++     ++E ++ +A+         ++E ++       +E    
Sbjct: 143 DFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEELTTTIAAPREELSQY 202

Query: 233 DSK 235
             K
Sbjct: 203 APK 205


>gi|289810801|ref|ZP_06541430.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 210

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/197 (53%), Positives = 137/197 (69%), Gaps = 1/197 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 14  NPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 73

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 74  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 133

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 134 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 193

Query: 182 QDAVLMVELEANQLSED 198
           + AVLMVE EA  LSED
Sbjct: 194 EAAVLMVESEAELLSED 210



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 84/191 (43%), Gaps = 19/191 (9%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++ +  D  A+ V  +G ++ +       G       ++Y     A
Sbjct: 27  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK------PGQDFFPLTVNYQERTYA 80

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS  E    RL  R + P+ P    F   +++++ +   +   +  
Sbjct: 81  AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFP--EGFVNEVQVIATVVSVNPQVNPD 138

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G + D      + + + DE     +D  VAGT+
Sbjct: 139 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPTQDELKESKLDLVVAGTE 194

Query: 498 SGITAMQMDMK 508
           + +  ++ + +
Sbjct: 195 AAVLMVESEAE 205


>gi|581223|emb|CAA25332.1| unnamed protein product [Escherichia coli]
          Length = 196

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/196 (53%), Positives = 135/196 (68%), Gaps = 1/196 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1   MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNYQERTYA G+IPG + RRE RP+E E LI+R+IDR IRPLF + + NE QVI  V+  
Sbjct: 61  VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS 179
           + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180

Query: 180 GTQDAVLMVELEANQL 195
           GT+ AVLMVE EA  L
Sbjct: 181 GTEAAVLMVESEAQLL 196



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 84/191 (43%), Gaps = 19/191 (9%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++ +  D  A+ V  +G ++ +       G       ++Y     A
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK------PGQDFFPLTVNYQERTYA 69

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS  E    RL  R I P+ P    F   +++++ +   +   +  
Sbjct: 70  AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFP--EGFVNEVQVIATVVSVNPQVNPD 127

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G + D      + + + DE     +D  VAGT+
Sbjct: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPTQDELKESKLDLVVAGTE 183

Query: 498 SGITAMQMDMK 508
           + +  ++ + +
Sbjct: 184 AAVLMVESEAQ 194


>gi|169642585|gb|AAI60927.1| Pnpt1 protein [Rattus norvegicus]
          Length = 383

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 130/347 (37%), Positives = 201/347 (57%), Gaps = 17/347 (4%)

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           +Q + +++G +  +FM+HY F P AT E  ++   +RRE+GHG LA +A+ PV+P    F
Sbjct: 8   DQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIP--KDF 65

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-------DGDD 472
           P+T+R+ SE+ ES+GSSSMA+ CG SLALMDAGVPIS  VAG+A+GLV        + +D
Sbjct: 66  PFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEIED 125

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ G+   I++ A+QQA   +  IL
Sbjct: 126 YRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKREIL 185

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
             MSK +S+ R    E  P VE + +P  +    IG GG  ++ +  +TG  ++  D+ T
Sbjct: 186 QTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDEET 245

Query: 593 VKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGL 646
             I + +   +  AR+ I  I         E   +Y   + ++ D G  V         L
Sbjct: 246 FSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVL 305

Query: 647 VHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           +H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 306 LHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 352



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 27/179 (15%)

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVM 118
             ++Y+   YA  +       + +     E+    + ++++ P+  K +    +V   V+
Sbjct: 22  FMLHYEFPPYATNETG-----KVTGVNRRELGHGALAEKALCPVIPKDFPFTIRVTSEVL 76

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ------- 171
           + +  SS  + S    S ALM +G+P    V G  V  +      NP   E +       
Sbjct: 77  ESNGSSS--MASACGGSLALMDAGVPISSAVAGVAVGLVTKS---NPEKGEIEDYRLLTD 131

Query: 172 --------GSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
                   G +D  ++GT   +  ++ +     +   ++++AI       + +++ +SK
Sbjct: 132 ILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKREILQTMSK 190


>gi|223557963|gb|ACM90970.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium
           URE12]
          Length = 316

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 169/310 (54%), Gaps = 6/310 (1%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVN 62
           +  +E +   + L  ETG +A+Q+ GAV    GET+V +        KD   +F PL+ +
Sbjct: 7   ITRLETQVGDKTLYFETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCD 66

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           Y+E+TYA GKIPGG+ +RE +  + EIL SR+ DRS+RPLF   +  ETQV   V+  D 
Sbjct: 67  YREKTYAAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFPDYFNTETQVNSLVISADG 126

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGT 181
           ++   V+S+ A+SAALM+S +PF GPV   ++   NG+++  P+ +E  G  ++L +SGT
Sbjct: 127 KNEADVLSINASSAALMISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGLEMELVISGT 186

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF-SKL 240
           +  +LMVE    Q+    ++ A+   H E   + +   ++ K+  K+   + + +   +L
Sbjct: 187 RQGILMVEGGGKQIPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINPEL 246

Query: 241 EEEMSQMIKEDLRVSCFI-PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEG--EIVSVFED 297
           +  + +M +E L+      P K V    + ++K K      +++   +    +  ++ ED
Sbjct: 247 KAAVEEMSREPLKKLLASRPVKQVLEAGMSEIKDKASDAMVAKYPDDSTASYQAKTIVED 306

Query: 298 IQAKVVRTVM 307
           I  +  R++ 
Sbjct: 307 IIYEESRSLC 316



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 22/224 (9%)

Query: 325 ISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           +  + G L ++  G+     G+T                    +  +       Y     
Sbjct: 19  LYFETGELAKQAGGAVTLRLGETIVFSAC-----CQASKPKD-TPPEFTPLSCDYREKTY 72

Query: 384 ATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SS 436
           A G++      R G    +EI   RL  R++ P+ P    F    ++ S +  +DG   +
Sbjct: 73  AAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFP--DYFNTETQVNSLVISADGKNEA 130

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
            + ++  SS ALM + +P + PV  + +G  K    FI       +E     M+  ++GT
Sbjct: 131 DVLSINASSAALMISDIPFNGPVGAVRIG--KKNGKFIFFP--QHEERPGLEMELVISGT 186

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
             GI  ++   K   I  + ++ A++ A    + I +   ++  
Sbjct: 187 RQGILMVEGGGKQ--IPNSDLISAMETAHPEIVKICDLQIEMQK 228


>gi|213417627|ref|ZP_03350761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 196

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/184 (52%), Positives = 127/184 (69%), Gaps = 1/184 (0%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +    E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLTVN
Sbjct: 13  NPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 72

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           YQERTYA G+IPG + RRE RP+E E LI+R+IDR +RPLF + + NE QVI  V+  + 
Sbjct: 73  YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 132

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGT 181
           + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  LDL V+GT
Sbjct: 133 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 192

Query: 182 QDAV 185
           + AV
Sbjct: 193 EAAV 196



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G++ R   +++ +  D  A+ V  +G ++ +       G       ++Y     A
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK------PGQDFFPLTVNYQERTYA 79

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSS 437
            G +      R G PS  E    RL  R + P+ P    F   +++++ +   +   +  
Sbjct: 80  AGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFP--EGFVNEVQVIATVVSVNPQVNPD 137

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           +  + G+S AL  +G+P + P+    +G + D      + + + DE     +D  VAGT+
Sbjct: 138 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPTQDELKESKLDLVVAGTE 193

Query: 498 SGI 500
           + +
Sbjct: 194 AAV 196


>gi|68171420|ref|ZP_00544811.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67999162|gb|EAM85821.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 242

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 114/230 (49%), Positives = 160/230 (69%), Gaps = 4/230 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           MF++     EW G+ L LE+G+IARQ+ GAV+ +Y  T VLATVV  ++ K+  DF PLT
Sbjct: 1   MFNLIRRSAEWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V +  ++YAVGKIPGG+L+RE +P++ E LISR+IDRSIRPLF   + +E  ++ N++ +
Sbjct: 60  VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSY 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQ-GSLDLF 177
           D  + P V ++V A+AAL +SG+PF G VVGA+V Y+   G+Y+LN   DE    SLDLF
Sbjct: 120 DTVTPPEVTALVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLF 179

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +SG +D+VLMVE EA++LSE  +L AI FGH  C+ VI  I + +    K
Sbjct: 180 LSGNEDSVLMVESEASELSESQMLGAITFGHQHCQEVINLIKEFSHEVVK 229



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 13/226 (5%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLG-TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
           + ++  G+ +     T  +  V  G T+E    VD L  T +      Y       G + 
Sbjct: 23  IARQASGAVMVSYAGTTVLATVVTGKTKEP---VDFLPLTVQ-FVAKSYAVGKIPGGFLK 78

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--GSSSMATVCGSSLA 447
           R G PS RE    RL  R+I P+ P        + IV  +   D      +  + G++ A
Sbjct: 79  REGKPSDRETLISRLIDRSIRPLFPAGFYDE--ISIVCNLLSYDTVTPPEVTALVGATAA 136

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           L  +GVP +  V G  +G +     +  L + S DE     +D  ++G +  +  ++ + 
Sbjct: 137 LSISGVPFNGLVVGARVGYLPSEGKY--LLNASADEMLCSSLDLFLSGNEDSVLMVESEA 194

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
                SE+ M+ A+    +    ++N + +   E    L    P +
Sbjct: 195 SEL--SESQMLGAITFGHQHCQEVINLIKEFSHEVVKHLLTSYPMI 238


>gi|282897292|ref|ZP_06305294.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
 gi|281197944|gb|EFA72838.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
          Length = 259

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 7/250 (2%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
             I + GR ++L+ G +A Q+ G+VL   G+T VL T       ++G DF PLTV+Y+ER
Sbjct: 6   KSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRS-EAREGIDFLPLTVDYEER 64

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            YA G+IPGG +RRE RP E  IL SR+IDR +RPLF    +++ QVI   +  D    P
Sbjct: 65  LYAAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDELVPP 124

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVSGTQDAV 185
            V+++  AS A +++ +PF GP+   +V  +   +++NP   E + G LDL V+G+ D V
Sbjct: 125 DVLAVTGASIATLIAQIPFYGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPDGV 184

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA-----KEPIVIDSKDFSKL 240
           +MVE  ANQL E  +++AI FG+   + +I+A   L          +EP + D    + +
Sbjct: 185 IMVEAGANQLPERDIIEAIDFGYEAVRDLIQAQRDLIAELGLTIVLQEPPIPDQSLENYI 244

Query: 241 EEEMSQMIKE 250
            +  S+ IK+
Sbjct: 245 RDRASEEIKK 254



 Score = 91.1 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 24/249 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLL-QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +DK +  DG      RDI  +VGLL  +  GS L   GDT  +V  T    E  + +D L
Sbjct: 4   IDKSISFDG------RDIRLKVGLLAPQAGGSVLIESGDTAVLVTATR--SEAREGIDFL 55

Query: 367 --SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             +                  G + R G P  R I   RL  R + P+ P   +    L+
Sbjct: 56  PLTVDYEERLYAAGRIP---GGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDD--LQ 110

Query: 425 IVSEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +++     D      +  V G+S+A + A +P   P+A + +GLV  GDDFII    +  
Sbjct: 111 VIALTLSMDELVPPDVLAVTGASIATLIAQIPFYGPMAAVRVGLV--GDDFIINP--TYA 166

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           E   G +D  VAG+  G+  ++       + E  ++ A+         ++     +++E 
Sbjct: 167 EIEAGDLDLVVAGSPDGVIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIQAQRDLIAEL 224

Query: 543 RLQLGEFTP 551
            L +    P
Sbjct: 225 GLTIVLQEP 233


>gi|195341761|ref|XP_002037474.1| GM12087 [Drosophila sechellia]
 gi|194131590|gb|EDW53633.1| GM12087 [Drosophila sechellia]
          Length = 285

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 148/247 (59%), Gaps = 5/247 (2%)

Query: 3   DVHTVEIEW-AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           +  +VE+ +  GR +   +GR+AR ++G  +   G+T V+ T V       GQ F PL V
Sbjct: 38  EAPSVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPNPGQGFMPLVV 97

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +Y+ +  A G+IP  ++RRE  P+E EIL +R+IDRS+RPLF K Y+ ETQ++ N++  D
Sbjct: 98  DYRLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMD 157

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSG 180
              SP V+++ AAS AL LS +P+ GP+   +V   +G+ ++NP   E Q S LDL VS 
Sbjct: 158 AVHSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSA 217

Query: 181 TQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           T+ + V+M+E + N + +  +L AI  G  E + +I  I +L K   ++   ++    ++
Sbjct: 218 TKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVA--AE 275

Query: 240 LEEEMSQ 246
           ++ E+ +
Sbjct: 276 VDPELGE 282



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 21/229 (9%)

Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R+++   G L R  +G+++   GDT  +V     T+ +        G      ++ Y   
Sbjct: 50  RNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKTKPN-------PGQGFMPLVVDYRLK 102

Query: 382 PCATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG-- 434
             A+G +      R   PS +EI   RL  R++ P+      +    ++V  +   D   
Sbjct: 103 NAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFH--KDYRTETQLVCNMLAMDAVH 160

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           S  +  +  +S+AL  + +P + P+  + +GL     D  +L + +  E     +D  V+
Sbjct: 161 SPDVLAINAASMALSLSDIPWNGPIGAVRVGLC----DGEVLINPTRRELQTSQLDLVVS 216

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            T   +  M        + ++++    Q  +  +  I        +  R
Sbjct: 217 ATKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGR 265


>gi|153876840|ref|ZP_02003956.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
 gi|152066696|gb|EDN66044.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
          Length = 255

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 152/253 (60%), Positives = 189/253 (74%)

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           MA+VCGSSLALMDAGV I  PVAGIAMGL+K+ D F++LSDI GDEDHLG MDFKVAGT 
Sbjct: 1   MASVCGSSLALMDAGVQIKAPVAGIAMGLIKEDDQFVVLSDIMGDEDHLGDMDFKVAGTT 60

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            G+TA+QMD+KI GI+  IM  AL QAK GRLHIL+ M + L+E R ++ ++ PR+    
Sbjct: 61  DGVTALQMDIKIEGITSEIMETALAQAKEGRLHILSLMCQALAEPRQEMSKYAPRIITFH 120

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P++IR VIG GG  IR I E+TG  VNI+++G V IAS  L   E AR  I +IT   
Sbjct: 121 IKPEKIREVIGKGGTTIRAIQEETGTTVNINEEGIVTIASVDLVAGEEARRQIETITSDI 180

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV K+Y+G+VVK+MDFGAFV     +DGLVHISQ+S ERV K SD +KEG+TV VK+L+ 
Sbjct: 181 EVGKVYEGKVVKLMDFGAFVTILPGKDGLVHISQISQERVEKVSDKLKEGETVKVKVLEI 240

Query: 678 DDRGKIKLSMKVV 690
           D +G+I+LSMK V
Sbjct: 241 DKQGRIRLSMKAV 253



 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 60/132 (45%), Gaps = 9/132 (6%)

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQGSLDLFVSGTQ 182
           + S+  +S ALM +G+  + PV G  +  I  + Q+V+   +   ++  G +D  V+GT 
Sbjct: 1   MASVCGSSLALMDAGVQIKAPVAGIAMGLIKEDDQFVVLSDIMGDEDHLGDMDFKVAGTT 60

Query: 183 DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
           D V  ++++     ++ +++  A+         ++  + +      +E      +  +  
Sbjct: 61  DGVTALQMDIKIEGITSEIMETALAQAKEGRLHILSLMCQALAEPRQEMSKYAPRIITFH 120

Query: 241 --EEEMSQMIKE 250
              E++ ++I +
Sbjct: 121 IKPEKIREVIGK 132


>gi|313608979|gb|EFR84725.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL F2-208]
          Length = 184

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 84/185 (45%), Positives = 128/185 (69%), Gaps = 2/185 (1%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  + G DFFPLT
Sbjct: 1   MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           VNY+E+ Y+VGK+PGG+L+RE RP++   L +R+IDR IRPLF++ ++NE Q+   V   
Sbjct: 60  VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS 179
           D + SP + +M+ +S AL++S +PFEGP+ G  V  I+G+YV+NP +++ ++  + L V+
Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 180 GTQDA 184
           GT DA
Sbjct: 180 GTYDA 184



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 20/179 (11%)

Query: 325 ISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           +S +VG L ++  G++L   GDT  +    +G+++                 ++Y     
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAA-VGSKKP-------RPGDFFPLTVNYEEKMY 67

Query: 384 ATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SS 436
           + G+V      R G PS R     RL  R I P+      F   ++I S +   D   S 
Sbjct: 68  SVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLF--AEGFRNEVQITSTVFSVDQDCSP 125

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
            MA + GSS+AL+ + +P   P+AG+ +G +     ++I   I   E     +      
Sbjct: 126 EMAAMLGSSVALVISDIPFEGPIAGVDVGRI--DGKYVINPTIEQAEKSDISLTVAGTY 182


>gi|219115974|ref|XP_002178782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409549|gb|EEC49480.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 956

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 142/377 (37%), Positives = 216/377 (57%), Gaps = 26/377 (6%)

Query: 337 GSSLFIRGDTQAIVVVTLGTR----EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS-RM 391
           GS  F+R  TQ  +V  + +R    + E+  DS S  +     + Y+F P ATG V    
Sbjct: 572 GSLRFLR--TQESLVSDMNSRKVKADKERTGDSGSLAEVKRAFLQYDFPPYATGTVPIGS 629

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA 451
            A +RR IGHG LA +A+ PVLP    FPY +RI SE+T+S+GSSSMA+VCG +LAL+DA
Sbjct: 630 QAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRISSEVTDSNGSSSMASVCGGTLALLDA 689

Query: 452 GVPISKPVAGIAMGLVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           GVPI  PVAG+++GL +D D        +L DI+G ED+ G MDFK+AGT  GITA Q+D
Sbjct: 690 GVPIQMPVAGVSVGLARDVDAGEAGVHRLLLDITGTEDYYGGMDFKIAGTRKGITAFQLD 749

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLS---ESRLQLGEFTPRVEIMAIPPDQI 563
           +K   +   I+  ALQ A RGR  ILNEM    S   ++R    +  PRVE++   P + 
Sbjct: 750 VKQL-LPLEIVTEALQLACRGRNVILNEMQDQCSDGLKARPSPKDSAPRVEVVRFNPQRK 808

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R+++G GG ++R + ++ G  +++  +G   +  +    ++ A+  +  +       ++Y
Sbjct: 809 RDLVGPGGIILRQLEDRYGVALDLTQEGRCLLFGADQELVDQAKLTVMDLVADVVPGEVY 868

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKT-------SDVVKEGDTVWVKL 674
           +G ++++ DFGA V     ++GL+H+S+L+ E+                +KEG  V V  
Sbjct: 869 EGTIIEIKDFGAIVELLRNKEGLLHVSELTNEQEAGDHPGGIAGFVRQYLKEGQKVEVLC 928

Query: 675 LDFDD-RGKIKLSMKVV 690
            D D  +G I+LS K +
Sbjct: 929 TDVDPVQGSIRLSRKAI 945



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 41/254 (16%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-----FPLT 60
           T      G P++  TG++AR +  +V+   G TVVLATV +        D        LT
Sbjct: 53  TFSRLIEGPPIQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNNAASTFLT 112

Query: 61  VNYQERTYAVGKIPGGYLRRESRP-TENEILISRMIDRSIRPLF--SKCYKNETQVIINV 117
           V+Y++R + VGKIP    RR++   +  E+L SR IDR++RPL            V  +V
Sbjct: 113 VDYRQRYHGVGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLIRTEDAIDGRLHVTCSV 172

Query: 118 MQHD---LESSP---------HVVSMVAASAALMLSGLPFEGPVVGAQVDYIN------- 158
             ++    E               +  A+ +   ++           Q  ++        
Sbjct: 173 QSYEVFASEVDLRQDGLLDEKDNDATNASHSTHPVAMALNTAAAALLQQGHLTQPVAATV 232

Query: 159 ------GQYVL--NPRLDEDQGSL-DLFVSGTQDA-VLMVELE----ANQLSEDVVLDAI 204
                 G  V+  +P  ++   S  +L  +GT D  V+M+E      A  LSE  +   +
Sbjct: 233 LAVAAHGDGVVWQDPVPEQLADSYGELLYAGTADGHVVMLEWTSHRLATGLSESHMTQLL 292

Query: 205 IFGHNECKPVIEAI 218
                  +PV++ +
Sbjct: 293 ELAQTSIRPVLDLL 306



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 26/175 (14%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVM 118
           + Y    YA G +P G            I    + ++++ P+      +    ++   V 
Sbjct: 613 LQYDFPPYATGTVPIG----SQAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRISSEV- 667

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING---------QYVLNPRLDE 169
             D   S  + S+   + AL+ +G+P + PV G  V              + +L+    E
Sbjct: 668 -TDSNGSSSMASVCGGTLALLDAGVPIQMPVAGVSVGLARDVDAGEAGVHRLLLDITGTE 726

Query: 170 D-QGSLDLFVSGTQDAVLMVELEANQ-LSEDVVLDAIIFG-------HNECKPVI 215
           D  G +D  ++GT+  +   +L+  Q L  ++V +A+           NE +   
Sbjct: 727 DYYGGMDFKIAGTRKGITAFQLDVKQLLPLEIVTEALQLACRGRNVILNEMQDQC 781


>gi|213024185|ref|ZP_03338632.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 204

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 156/202 (77%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT  
Sbjct: 1   EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 60

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
           D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +  V+P   +
Sbjct: 61  DAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 120

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
           FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAGIAMGLVK+GD++++LSD
Sbjct: 121 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 180

Query: 479 ISGDEDHLGHMDFKVAGTDSGI 500
           I GDEDHLG MDFKVAG+  GI
Sbjct: 181 ILGDEDHLGDMDFKVAGSRDGI 202



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 26/188 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T      R  +       +  D F    +Y 
Sbjct: 25  RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLF--HYN 81

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDL 122
              Y+VG+           P   EI   R+  R +  +      +    +V+  + + + 
Sbjct: 82  FPPYSVGETGMV-----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 136

Query: 123 ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNPRLDEDQ--GSLDLF 177
            SS  + S+  AS ALM +G+P +  V G  +  +   +   VL+  L ++   G +D  
Sbjct: 137 SSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 194

Query: 178 VSGTQDAV 185
           V+G++D +
Sbjct: 195 VAGSRDGI 202


>gi|148927324|ref|ZP_01810889.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
           genomosp. GTL1]
 gi|147887280|gb|EDK72739.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
           genomosp. GTL1]
          Length = 264

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 139/261 (53%), Positives = 184/261 (70%), Gaps = 1/261 (0%)

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDISGDEDHLGH 488
             S+GS+SMA+VC   L++MDAGVPI  PV+GIAMGL  DG+   IILSDI G ED  G 
Sbjct: 1   MSSNGSTSMASVCSGILSMMDAGVPIKAPVSGIAMGLATDGNGKAIILSDIQGIEDFAGD 60

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFKV GT  GITA+QMD+K+ GIS ++M  ALQQAK GR  IL  M   L E R +L  
Sbjct: 61  MDFKVVGTTRGITALQMDIKVKGISPDLMAKALQQAKTGRAKILEHMLSTLPEPRPELSP 120

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           + PR+E + + P++I  +IG GG+ I  I  +TGA+++I DDG V I++     I+ A E
Sbjct: 121 YAPRIEKLMVNPEKIGAIIGKGGETINKITAETGAEIDIKDDGLVTISAVEHEAIQKALE 180

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++S+ + PEV K+Y+G+VVK+M+FGAFV+     DG+VHISQLS +RV K +DVVKEGD
Sbjct: 181 WVKSLVEEPEVGKVYEGKVVKIMEFGAFVNIMPGIDGMVHISQLSDQRVEKVTDVVKEGD 240

Query: 669 TVWVKLLDFDDRGKIKLSMKV 689
            V VKL+  DDRG++ LS+K 
Sbjct: 241 IVRVKLVAIDDRGRLNLSIKE 261


>gi|133918789|emb|CAL29599.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici]
          Length = 180

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 128/180 (71%), Positives = 150/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRD  TVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTSSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|71901440|ref|ZP_00683530.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71728811|gb|EAO30952.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 173

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/170 (50%), Positives = 118/170 (69%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T   ++    + LETG +ARQ+ GAV+    +TV+L TVV  ++ ++GQDFFPLTV+Y
Sbjct: 3   KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           QE+ YA G+IPG + +RE R TE E LISR+IDR IRPLF + YKNE Q+I  VM  D E
Sbjct: 63  QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS 173
               + +M+ ASAAL L+G+PF+GP+  A+V Y +GQY+LNP + E + S
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKS 172



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 15/149 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++ + G + R    ++ ++ D   ++V  +  +       +  G       + Y     A
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKT------AREGQDFFPLTVDYQEKFYA 68

Query: 385 TGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS-- 437
            G +      R G  + +E    RL  R I P+ P    +   ++I++ +   D      
Sbjct: 69  GGRIPGSFFKREGRATEKETLISRLIDRPIRPLFP--EDYKNEVQIIAMVMSLDPEIDGD 126

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +  + G+S AL  AG+P   P+    +G 
Sbjct: 127 IPAMIGASAALSLAGIPFKGPIGAAKVGY 155


>gi|133918787|emb|CAL29598.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum]
          Length = 180

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 130/180 (72%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918825|emb|CAL29617.1| polyribonucleotide nucleotidyltransferase [Rhizobium undicola]
          Length = 180

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 132/180 (73%), Positives = 154/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGLLPR-THGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PYSVGETG-----RMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY 161
           S  + ++   S ALM +G+P   PV G  +  I  G+ 
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLILEGER 166


>gi|133918827|emb|CAL29618.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918829|emb|CAL29619.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918831|emb|CAL29620.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 132/180 (73%), Positives = 154/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I A+VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVAEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGVLPR-THGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PFSVGETG-----RMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918793|emb|CAL29601.1| polyribonucleotide nucleotidyltransferase [Rhizobium giardinii]
          Length = 180

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGILPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY 161
            ++   S ALM +G+P   PV G  +  I  G+ 
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLILEGER 166


>gi|133918807|emb|CAL29608.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           xinjiangense]
 gi|133918809|emb|CAL29609.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           xinjiangense]
 gi|133918811|emb|CAL29610.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918813|emb|CAL29611.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918815|emb|CAL29612.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918817|emb|CAL29613.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
          Length = 180

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVLSDILGDEDHL 180



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFMLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+  +   +    +V+  + + +  SS  +
Sbjct: 75  PPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
            ++   S ALM +G+P   PV G  +  I  +
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLIKEE 164


>gi|133918821|emb|CAL29615.1| polyribonucleotide nucleotidyltransferase [Rhizobium huautlense]
          Length = 180

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 129/180 (71%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDEDHL 180



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           R +  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RAIVSEVGILPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918833|emb|CAL29621.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
 gi|133918835|emb|CAL29622.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
 gi|133918837|emb|CAL29623.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
          Length = 180

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGILPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGILPR-THGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PFSVGETG-----RMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918791|emb|CAL29600.1| polyribonucleotide nucleotidyltransferase [Rhizobium galegae]
          Length = 180

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 128/180 (71%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGILPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133919178|emb|CAL29637.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
 gi|133919180|emb|CAL29638.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
 gi|133919182|emb|CAL29639.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
          Length = 180

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 132/180 (73%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGLLPR-THGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PYSVGETG-----RMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918785|emb|CAL29597.1| polyribonucleotide nucleotidyltransferase [Agrobacterium rubi]
          Length = 180

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLSTVRPIVSEVGMLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGMLPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSVEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY 161
            ++   S ALM +G+P   PV G  +  I  G+ 
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLILEGER 166


>gi|133918797|emb|CAL29603.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918799|emb|CAL29604.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918801|emb|CAL29605.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 129/180 (71%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGVLPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFMLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+  +   +    +V+  + + +  SS  +
Sbjct: 75  PPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918803|emb|CAL29606.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918819|emb|CAL29614.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFMLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+  +   +    +V+  + + +  SS  +
Sbjct: 75  PPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918847|emb|CAL29628.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
 gi|133918849|emb|CAL29629.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
 gi|133918851|emb|CAL29630.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
          Length = 180

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS++F RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+GD F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEGDRFAVLSDILGDEDHL 180



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ + T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGLLPR-THGSAIFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PFSVGETG-----RLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPIAKPVAGIAMGLI 161


>gi|133918853|emb|CAL29631.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
 gi|133918855|emb|CAL29632.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
          Length = 180

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGLLPR-THGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PFSVGETG-----RLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPIAKPVAGIAMGLI 161


>gi|133918823|emb|CAL29616.1| polyribonucleotide nucleotidyltransferase [Rhizobium gallicum]
          Length = 180

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLATVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSVEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGLLPR-THGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PYSVGETG-----RMGSPGRREIGHGKLAWRAIHPMLPSVEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918839|emb|CAL29624.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133918841|emb|CAL29625.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133918843|emb|CAL29626.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133919172|emb|CAL29634.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
 gi|133919174|emb|CAL29635.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris
           LMG 14919]
 gi|133919176|emb|CAL29636.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
          Length = 180

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I A+VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGILPR-THGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            Y+VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PYSVGETG-----RMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133918805|emb|CAL29607.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  FM+HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP+  QFPYTLR+V
Sbjct: 61  TGMYKERFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVSEVGLLPR-THGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKERFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLES 124
            Y+VG+       R   P   EI   ++  R+IRP+  +   +    +V+  + + +  S
Sbjct: 76  PYSVGETG-----RMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133919184|emb|CAL29640.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis]
          Length = 180

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 128/180 (71%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD ETVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           R +  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RAIVSEVGILPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|159481271|ref|XP_001698705.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
 gi|158273599|gb|EDO99387.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
          Length = 599

 Score =  255 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/241 (36%), Positives = 148/241 (61%), Gaps = 5/241 (2%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
            G+ +KLETG I RQ++GA++AT GET++ AT     S      F PLTVNY ER  A G
Sbjct: 93  GGKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAG 152

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSM 131
           +  GG+++R+ RP + E+L+SR++DR IRP+F+K + N+TQ++  V+ +D  + P  +++
Sbjct: 153 RTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAI 212

Query: 132 VAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQ-GSLDLFVSGTQDAVLMVE 189
            AA+AAL++S +P +  V G +V    +G +++NP ++E +   LDL V+GT+DAVLM+E
Sbjct: 213 TAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIE 272

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249
              + L+E+ +++A+  G      + + +   AK   K      +     + EE+   + 
Sbjct: 273 GFCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGKPKR---TDAVVTVPEELESRLM 329

Query: 250 E 250
           E
Sbjct: 330 E 330



 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 120/347 (34%), Positives = 161/347 (46%), Gaps = 89/347 (25%)

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           +I V TLG+  D    D++           Y+F P + GE  R GAP             
Sbjct: 332 SICVATLGSANDALRSDTMR---------KYHFPPSSVGETGRTGAP------------- 369

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
                          +R+ S ITES+GSSSMA+VCG  LA+MDAGVPI++PVAGIAMGL+
Sbjct: 370 ---------------VRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAMGLI 414

Query: 468 KD-GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
            +      +LSDI G ED LG MDFKVAG    ITA QMD                    
Sbjct: 415 LESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMD-------------------- 454

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-V 585
                                        + I PD+   VIG GG+VI+ I + +GA  +
Sbjct: 455 -----------------------------IKIDPDKKGAVIGSGGRVIKQIRDVSGATAI 485

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV-KVMDFGAFVHFCGARD 644
           +ID+ G V + + S      A E ++ +   PE   I++ + V  +  FG FV  C  R 
Sbjct: 486 DIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCPGRQ 545

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           GLVH+S+L        + VVK GD + V ++   D GK+ LS K V 
Sbjct: 546 GLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQ 592



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATV 441
           + G V R G P   E+   RL  R I P+      +    +I+  +   DG        +
Sbjct: 155 SGGFVKRDGRPRDAEVLVSRLVDRPIRPMF--AKGWANDTQILEWVLSYDGVNDPEPLAI 212

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             ++ AL+ + +P+ K VAG+ +G+  DG  FII   +   E     +D  VAGT   + 
Sbjct: 213 TAAAAALLISDIPLKKAVAGVRVGMSADGG-FIINPTVEEMETS--RLDLMVAGTRDAVL 269

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            ++       ++E  M+ AL +       + ++M 
Sbjct: 270 MIEGFCDF--LTEEQMIEALGKGSEAIASLCDQME 302


>gi|133918783|emb|CAL29596.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           tumefaciens]
          Length = 180

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   VLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+ +G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHL 180



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           RP+  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RPIVSEVGILPR-THGSALFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY 161
            ++   S ALM +G+P   PV G  +  I  G+ 
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLILEGER 166


>gi|133919186|emb|CAL29641.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
           mediterraneum]
          Length = 180

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 126/180 (70%), Positives = 152/180 (84%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRD +TVR I ++VG+L RTHGS+LF RG+TQA+VV TLGT EDEQYVDSL
Sbjct: 1   ILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RAI P+LP   QFPYTLR+V
Sbjct: 61  TGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTADQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+G+ F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVLSDILGDEDHL 180



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           R +  E G + R + G+ L T GET  L       + +D Q    LT  Y+E+    Y  
Sbjct: 17  RKIVSEVGVLPR-THGSALFTRGETQALVVATLG-TGEDEQYVDSLTGMYKEKFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R+IRP+      +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTADQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQY 161
            ++   S ALM +G+P   PV G  +  I  G+ 
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGER 166


>gi|133919188|emb|CAL29642.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium elkanii]
          Length = 180

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/179 (65%), Positives = 147/179 (82%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRD++TVR+I A+ G+L R HGS+LF RG+TQA+VV TLGT EDEQY+D+L
Sbjct: 1   ILDTGKRIDGRDAKTVRNIIAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDAL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           SGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   +FPYT+R+V
Sbjct: 61  SGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           SEITES+GSSSMA+VCG+SL+LMDAGVP+ +P AGIAMGL+ +G  F +LSDI GDEDH
Sbjct: 121 SEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGQRFAVLSDILGDEDH 179



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFF------PLTVNYQER 66
           R +  E G + R + G+ L T GET  ++ T +     +   D           ++Y   
Sbjct: 17  RNIIAEAGVLPR-AHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKETFLLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ--HDLES 124
            Y+VG+       R       EI   ++  R+I P+      +E    I V+    +   
Sbjct: 76  PYSVGETG-----RLGGTKRREIGHGKLAWRAIHPVLP--PHHEFPYTIRVVSEITESNG 128

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + S+  AS +LM +G+P + P  G  +  I
Sbjct: 129 SSSMASVCGASLSLMDAGVPLKRPTAGIAMGLI 161


>gi|133918845|emb|CAL29627.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           americanum]
          Length = 180

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS++F RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  RMG+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ D F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDEDHL 180



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ + T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGLLPR-THGSAIFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PFSVGETG-----RMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|213423016|ref|ZP_03356034.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 233

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 141/233 (60%), Gaps = 1/233 (0%)

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           V+GT+ AVLMVE EA  LSED +L A++FGH + + VI+AI+ L K   K       +  
Sbjct: 1   VAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAV 60

Query: 238 S-KLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFE 296
           +  L   ++ + +  L  +  I +K  R  Q+D +K + +    +E  + +  E+  +  
Sbjct: 61  NDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILH 120

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            I+  VVR+ +L  + R+DGR+ + +R +  + G+L RTHGS+LF RG+TQA+V  TLGT
Sbjct: 121 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 180

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
             D Q +D L G + + F+ HYNF P + GE   +G+P RREIGHGRLA+R +
Sbjct: 181 ARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 233



 Score = 39.5 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV--YDRSLK-------DGQDFFPLTVNYQ 64
           R L + TG + R + G+ L T GET  L T      R  +       +  D F    +Y 
Sbjct: 147 RGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLF--HYN 203

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSI 99
              Y+VG+           P   EI   R+  R +
Sbjct: 204 FPPYSVGETGMV-----GSPKRREIGHGRLAKRGV 233


>gi|133919190|emb|CAL29643.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium
           japonicum]
          Length = 180

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 120/180 (66%), Positives = 147/180 (81%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD   R+DGRDS+TVR+I A+VG+L R HGS+LF RG+TQA+VV TLGT EDEQY+D+L
Sbjct: 1   ILDTGKRIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           SGT +  F++HYNF P + GE  R+G   RREIGHG+LA RAIHPVLP   +FPYT R+V
Sbjct: 61  SGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMA+VCG+SLALMDAGVP+ +P AGIAMGL+ +   F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLSDILGDEDHL 180



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFF------PLTVNYQER 66
           R +  E G + R + G+ L T GET  ++ T +     +   D           ++Y   
Sbjct: 17  RNIIAEVGVLPR-AHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKETFLLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLES 124
            Y+VG+       R       EI   ++  R+I P+      +   T+V+  + + +  S
Sbjct: 76  PYSVGETG-----RLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + S+  AS ALM +G+P + P  G  +  I
Sbjct: 131 S--MASVCGASLALMDAGVPLKRPTAGIAMGLI 161


>gi|133918795|emb|CAL29602.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           rhizogenes]
          Length = 180

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 127/180 (70%), Positives = 151/180 (83%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD K R+DGRD  TVR I ++VG+L RTHGSSLF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  +  F++HYNF P + GE  RMG+P RREIGHG+LA RA+ P+LP   QFPYTLR+V
Sbjct: 61  TGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVP++KPVAGIAMGL+K+ + F +LSDI GDEDHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDEDHL 180



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 9/149 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT---YAV 70
           R +  E G + R + G+ L T GET  +       + +D Q    LT  Y+ER    Y  
Sbjct: 17  RAIVSEVGVLPR-THGSSLFTRGETQAIVVATLG-TGEDEQYVDSLTGMYKERFLLHYNF 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                G   R   P   EI   ++  R++RP+    + +    +V+  + + +  SS  +
Sbjct: 75  PPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVVSEITESNGSSS--M 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYI 157
            ++   S ALM +G+P   PV G  +  I
Sbjct: 133 ATVCGTSLALMDAGVPLAKPVAGIAMGLI 161


>gi|133919170|emb|CAL29633.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
          Length = 180

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +LD + R+DGRD  TVR I A+VGLL RTHGS+LF RG+TQAIVV TLGT EDEQYVDSL
Sbjct: 1   ILDTQSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSL 60

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +G  + +FM+HYNF P + GE  R+G+P RREIGHG+LA RAIHP+LP   QFPYTLR+V
Sbjct: 61  TGMYKENFMLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVV 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           SEITES+GSSSMATVCG+SLALMDAGVPI+KPVAGIAMGL+K+ D F +LSDI GD+DHL
Sbjct: 121 SEITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDKDHL 180



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 17/153 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGET-VVLATVVYDRSLKDGQDFFP------LTVNYQER 66
           RP+  E G + R + G+ L T GET  ++   +     +   D           ++Y   
Sbjct: 17  RPIVAEVGLLPR-THGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKENFMLHYNFP 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
            ++VG+       R   P   EI   ++  R+I P+    + +    +V+  + + +  S
Sbjct: 76  PFSVGETG-----RLGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEITESNGSS 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           S  + ++   S ALM +G+P   PV G  +  I
Sbjct: 131 S--MATVCGTSLALMDAGVPIAKPVAGIAMGLI 161


>gi|1628372|emb|CAA67158.1| polynucleotide phosphorylase [Dichelobacter nodosus]
          Length = 251

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 131/238 (55%), Positives = 171/238 (71%)

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
           SSMA+VCGSSLALMDAGVP+  PVAGIAMGL+K+GD+F IL+DI GDEDHLG MDFKVAG
Sbjct: 1   SSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDILGDEDHLGDMDFKVAG 60

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
           + +G+TA+QMD+KI GI+E IM  AL QA  GRLHIL  M++ ++ +  +L ++ PR   
Sbjct: 61  SATGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAIAGTARELSDYAPRFSS 120

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           M I  ++I++VIG GG  IR I EQTG  + I+DDG+VKIA++  A    AR +I  I  
Sbjct: 121 MRIDTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATDKAAAANARRLIEEIVA 180

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            PE+ +IY  +V K+ DFGAF+ F   ++GLVHISQ++  RV    D + EG  V VK
Sbjct: 181 EPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDELTEGQEVKVK 238



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRL---DEDQGSLDLFVSGTQ 182
           + S+  +S ALM +G+P + PV G  +  I    ++ +   +   ++  G +D  V+G+ 
Sbjct: 3   MASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDILGDEDHLGDMDFKVAGSA 62

Query: 183 DAVLMVELE--ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
             V  ++++   N ++E+++  A+   H     ++E +++     A+E      +
Sbjct: 63  TGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAIAGTARELSDYAPR 117


>gi|311252595|ref|XP_003125174.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Sus scrofa]
          Length = 487

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 54/372 (14%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
            TV ++   R L++ +G++AR +DG+ +   G+T V+ T V        Q F PL V+Y+
Sbjct: 45  RTVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYR 103

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           ++  A G+IP  YLRRE   ++ EIL SR+IDRSIRPLF   Y  +TQ++ N++  D  +
Sbjct: 104 QKAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVN 163

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLF------ 177
            P V+++  AS AL LS +P+ GP+   ++  I+G+ V+NP   E   S L+L       
Sbjct: 164 EPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVTGAPK 223

Query: 178 --------------------------VSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHN 209
                                     ++GT   +  ++ +     +   +V++AI     
Sbjct: 224 SQIDVQPAVCAFVKGIEDYHGDMDFKIAGTAKGITALQADIKLPGIPIKIVMEAIQQASV 283

Query: 210 ECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVS---CFIPEKYVRCK 266
             K +++ ++K              K+   + E +   + +  +      +  +K     
Sbjct: 284 AKKEILQIMNKTI-----PKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAET 338

Query: 267 --QIDDLKKKMVSYFSSEHSSWNEGE--IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETV 322
              I  + ++  S F+   S+ +E +  I  + +D Q + +      +   +       +
Sbjct: 339 GVTISQVDEETFSIFAPTPSAMHEAKDFITEICKDDQEQQL------EFGAVYTATITEI 392

Query: 323 RDISAQVGLLQR 334
           RD    V L   
Sbjct: 393 RDTGVMVKLYPN 404



 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 182/417 (43%), Gaps = 47/417 (11%)

Query: 323 RDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R +    G L R   GS++   GDT  +V     T+        L    R          
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMA 439
              T  + R    S +EI   R+  R+I P+ P  A + Y  +I+  +   DG     + 
Sbjct: 114 ---TNYLRREIGSSDKEILTSRVIDRSIRPLFP--AGYFYDTQILCNLLAVDGVNEPDVL 168

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI------------------------- 474
            + G+S+AL  + +P + P+  + +G++ DG+  +                         
Sbjct: 169 AINGASVALSLSDIPWNGPIGAVRIGMI-DGECVVNPTRKEMSSSTLNLVVTGAPKSQID 227

Query: 475 ----ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + + + G ED+ G MDFK+AGT  GITA+Q D+K+ GI   I++ A+QQA   +  
Sbjct: 228 VQPAVCAFVKGIEDYHGDMDFKIAGTAKGITALQADIKLPGIPIKIVMEAIQQASVAKKE 287

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           IL  M+K + + R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  D+
Sbjct: 288 ILQIMNKTIPKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDE 347

Query: 591 GTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGARD 644
            T  I + + + +  A++ I  I         E   +Y   + ++ D G  V        
Sbjct: 348 ETFSIFAPTPSAMHEAKDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTA 407

Query: 645 GLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    IV
Sbjct: 408 VLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTIV 463


>gi|34787346|dbj|BAC87791.1| polynucleotide phosphorylase [Streptococcus bovis]
          Length = 159

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
             T E  +AGRPL +E G++A+Q++GA +  YGE+ VL+  V  + +  G DFFPL VNY
Sbjct: 3   KQTFETTFAGRPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTG-DFFPLQVNY 61

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
           +E+ YA GK PGG+ +RE RPT +  L +R+IDR IRP+F++ ++NE QVI  V+ +D +
Sbjct: 62  EEKMYAAGKFPGGFNKREGRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDED 121

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQY 161
           +S  + +M  +S AL +S +PF GP+ G QV YI+G++
Sbjct: 122 ASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYIDGEF 159



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 8/151 (5%)

Query: 323 RDISAQVG-LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           R +  ++G + ++ +G+++   G++  +    +  +        L             F 
Sbjct: 13  RPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE--SDGSSSMA 439
               G   R G P+       RL  R I P+      F   +++++ +     D S+ MA
Sbjct: 73  ---GGFNKREGRPTTDATLTARLIDRPIRPMF--AEGFRNEVQVINTVLSYDEDASAPMA 127

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            + GSSLAL  + +P + P+AG+ +  +   
Sbjct: 128 AMFGSSLALSISDIPFNGPIAGVQVAYIDGE 158


>gi|213417036|ref|ZP_03350180.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 247

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 114/232 (49%), Positives = 165/232 (71%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           AMGLVK+GD++++LSDI GDEDHLG MDFKVAG+  GI+A+QMD+KI GI++ IM +AL 
Sbjct: 1   AMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALN 60

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QAK  RLHIL  M + ++  R  + EF PR+  + I  D+I++VIG GG VIR + E+TG
Sbjct: 61  QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETG 120

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             + I+DDGTVKIA++   + + A   I  IT   EV +IY  +V +++DFGAFV   G 
Sbjct: 121 TTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGG 180

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +G+++LS+K   + +
Sbjct: 181 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQS 232


>gi|46202937|ref|ZP_00052357.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 218

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 132/193 (68%), Positives = 163/193 (84%)

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
           MG+P RREIGHG+LA RAI PVLP   +FPYT+R+VSEITES+GSSSMA+VCG SL+LMD
Sbjct: 1   MGSPGRREIGHGKLAWRAIRPVLPAAHEFPYTIRVVSEITESNGSSSMASVCGGSLSLMD 60

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           AGVP+ +PVAGIAMGL+ +G+ F +LSDI GDEDHLG MDFKVAGT+ GIT++QMD+KI 
Sbjct: 61  AGVPLRRPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKIA 120

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+E IM +AL QAK GR HIL EM++ L+ +R +LGE+ PR+E M IP D+IR+VIG G
Sbjct: 121 GITEEIMKVALAQAKDGRAHILGEMAQDLTAARPELGEYAPRIETMQIPTDKIRDVIGTG 180

Query: 571 GKVIRGIVEQTGA 583
           GK+IR IVE+TGA
Sbjct: 181 GKIIREIVEKTGA 193



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 83/193 (43%), Gaps = 17/193 (8%)

Query: 82  SRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
             P   EI   ++  R+IRP+      +    +V+  + + +  SS  + S+   S +LM
Sbjct: 2   GSPGRREIGHGKLAWRAIRPVLPAAHEFPYTIRVVSEITESNGSSS--MASVCGGSLSLM 59

Query: 140 LSGLPFEGPVVGAQVDYI-NGQY--VLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQ 194
            +G+P   PV G  +  I  G+   VL+  L ++   G +D  V+GT++ +  ++++   
Sbjct: 60  DAGVPLRRPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKI 119

Query: 195 --LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDL 252
             ++E+++  A+    +    ++  +++       E      +       E  Q+  + +
Sbjct: 120 AGITEEIMKVALAQAKDGRAHILGEMAQDLTAARPELGEYAPRI------ETMQIPTDKI 173

Query: 253 RVSCFIPEKYVRC 265
           R       K +R 
Sbjct: 174 RDVIGTGGKIIRE 186


>gi|306836335|ref|ZP_07469315.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
 gi|304567806|gb|EFM43391.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
          Length = 255

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 115/251 (45%), Positives = 157/251 (62%), Gaps = 8/251 (3%)

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLV----KDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
           C S+L+L +AGVP+  PVAGIAMGLV    K  + F+ L+DI G ED  G MDFKVAGT 
Sbjct: 1   CASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAFGDMDFKVAGTS 60

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
             ITA+Q+D K+ GI   ++  AL+QA+  R  IL  M++V+     ++    P++  + 
Sbjct: 61  EFITALQLDTKLDGIPSKVLAQALEQARDARATILETMAEVIDSP-DEMSGLAPKITSVK 119

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--D 615
           IP ++I  +IG  GK I  I E TGA V+I+DDGTV I++ +    +AA E + SI    
Sbjct: 120 IPVNKIGELIGPKGKTINQITEDTGADVSIEDDGTVYISAVTGEAADAAIEKVNSIANPQ 179

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKL 674
           +P+V + + G VVK + FGAFV     RDGL+HIS L   ER+ K  DVV  GD V V++
Sbjct: 180 LPKVGERFLGTVVKTVPFGAFVSLTPGRDGLIHISNLGGDERIEKVEDVVNVGDKVQVEI 239

Query: 675 LDFDDRGKIKL 685
            D D+RGKI L
Sbjct: 240 ADIDNRGKISL 250


>gi|77407303|ref|ZP_00784238.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
 gi|77174088|gb|EAO77022.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
          Length = 223

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS-KDFSKLEEEMSQMIKEDLRVSCFI 258
           +L+A++ GH     +I    ++     KE   ++  +   +L+ E+       L+ +  +
Sbjct: 1   MLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEIIATHNIALQAAVQV 60

Query: 259 PEKYVRCKQIDDLKKKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVRTVMLDKKVR 313
            EK  R    + +K+ ++  + + ++   E      ++  + E ++   VR ++ + K+R
Sbjct: 61  EEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEHAEVRRLITEDKIR 120

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
            DGR  + +R + A++  L + HGS LF RG TQA+ V+TL    + Q +D L+   +  
Sbjct: 121 PDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYKKR 180

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
           FM HYNF   + GE  R GA  RREIGHG L  RA+  VLP 
Sbjct: 181 FMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPS 222


>gi|73969674|ref|XP_865499.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 2 [Canis familiaris]
          Length = 209

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 41  LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIR 100
           + T V        Q F PL V+Y+++  A G+IP  YLRRE   ++ E+L SR+IDRSIR
Sbjct: 1   MVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVIDRSIR 59

Query: 101 PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
           PLF   Y  +TQV+ N++  D  + P V+++  AS AL LS +P+ GP+   ++  I+G+
Sbjct: 60  PLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGE 119

Query: 161 YVLNPRLDEDQGS-LDLFVSGT-QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            V+NP   E   S L+L V+G  +  ++M+E  A  + +     AI  G    + +I+ I
Sbjct: 120 CVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAENILQQDFCHAIKVGVKYTQQIIQGI 179

Query: 219 SKLAKMCAKEPIVIDSKDFSKLEEEMSQMIK 249
            +L K           K F+   E +  + K
Sbjct: 180 QQLVKEIGVTKRT-PQKLFTPSPEIVEHIHK 209



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--SSSMATVCGSSL 446
            R    S +E+   R+  R+I P+ P  A + Y  +++  +   DG     +  + G+S+
Sbjct: 38  RREVGSSDKEVLTSRVIDRSIRPLFP--AGYFYDTQVLCNLLAVDGVNEPDVLAINGASV 95

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQM 505
           AL  + +P + P+  + +G++    D   + + +  E     ++  VAG     I  M+ 
Sbjct: 96  ALSLSDIPWNGPIGAVRIGMI----DGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEA 151

Query: 506 DMKI 509
             + 
Sbjct: 152 SAEN 155


>gi|254490936|ref|ZP_05104118.1| S1 RNA binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224463845|gb|EEF80112.1| S1 RNA binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 208

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 109/207 (52%), Positives = 147/207 (71%)

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           DFKVAGT+ G+TA+QMD+KI GI+E IM  AL QA+ GR+HIL++M+ V+S  R ++ EF
Sbjct: 1   DFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRIHILDKMNAVISTHRTEMSEF 60

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            PR+  + I  D+IR+VIG GG  IR I E+TGA ++I DDGTV I SS     ++A   
Sbjct: 61  APRIITIKIHADKIRDVIGKGGATIRAITEETGATIDIQDDGTVMIFSSDYNAGQSALRR 120

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  IT   EV KIY+G+V K+MDFGAFV     +DGLVHISQ+S ERV   SD + EGD 
Sbjct: 121 VEDITAEVEVGKIYEGRVAKLMDFGAFVTILPGKDGLVHISQISDERVENVSDKLSEGDV 180

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           + VK+L+ D +G+I+LSMK V++ T +
Sbjct: 181 IQVKVLEVDRQGRIRLSMKAVNEETSE 207


>gi|217032225|ref|ZP_03437723.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
 gi|216946096|gb|EEC24707.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
          Length = 292

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 148/277 (53%), Gaps = 10/277 (3%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  +++   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFIINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF--- 237
            M+E+ +     N L E ++L A+       K       +       E +  +S+     
Sbjct: 183 NMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEAFTPHQNELLFKESQGIIFN 242

Query: 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKK 274
            +L + +     +++           R     ++ KK
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFSEIAKK 279



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 10/219 (4%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           + ++   S ++  G T  +  V +   E E   +             Y       G V R
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCV---EREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR 76

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR--IVSEITESDGSSSMATVCGSSLAL 448
            G     EI   RL  R + P+ P+  ++P  +   ++S   E+D   S      ++L L
Sbjct: 77  EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFL 136

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ-MDM 507
                PI   V+   +  V   ++FII  + S        +          +  M+ +  
Sbjct: 137 AHIA-PIKS-VSACRIARV--DNEFIINPNTSLLNQSSLDLFVSGTKESLNMIEMRSLGQ 192

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           ++  + E +M+ AL+ A++          +  +  + +L
Sbjct: 193 QLNALEEPLMLKALELAQKSLKETCTLYEEAFTPHQNEL 231


>gi|224537696|ref|ZP_03678235.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520699|gb|EEF89804.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 246

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 108/234 (46%), Positives = 154/234 (65%), Gaps = 5/234 (2%)

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
              D + +LSDI GDEDHLG MDFKV GT +GITA QMD+K+ G+S  I+  AL QAK G
Sbjct: 6   PGEDKYAVLSDILGDEDHLGDMDFKVTGTKNGITATQMDIKVDGLSFEILERALNQAKEG 65

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
           R+HIL ++ + + E R +L    PR+E M IP + I  VIG GGK+I+G+ E+TGA + I
Sbjct: 66  RMHILGKILETIQEPREELKPHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITI 125

Query: 588 DD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++    G ++I+ ++   I+ A  +I+ I  VPEV ++YKG+V  VM +GAFV F   +D
Sbjct: 126 EEVDNIGRIEISGTNKKSIDDAMRLIKGIVAVPEVGEVYKGKVRSVMPYGAFVEFLPGKD 185

Query: 645 GLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           GL+HIS++  +R+    +  +KEGD + VKLLD D + GK KLS KV+     +
Sbjct: 186 GLLHISEIDWKRLETVEEAGIKEGDEIEVKLLDIDPKTGKFKLSRKVLLPRPER 239


>gi|289524567|ref|ZP_06441421.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502193|gb|EFD23357.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 187

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
           M +    E+E  GR L   TG +A+Q++GAV A YG+T VL T   +   ++  DFFPL 
Sbjct: 6   MNEDKCFEVEIGGRTLVFSTGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLI 65

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+Y+ER YA GKIPGG+++RE +P+E+ IL +R++DRSIR LF +  KN+  V+  ++  
Sbjct: 66  VDYEERFYAAGKIPGGFIKREGKPSESAILSARLVDRSIRSLFPEHMKNDVHVVATILSV 125

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI 157
           D  + P V+++ AASAAL +S +P++GP    +   +
Sbjct: 126 DQTNPPDVLAINAASAALAISDIPWDGPRGC-RAGRL 161


>gi|323191726|gb|EFZ76978.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
          Length = 222

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 96/207 (46%), Positives = 142/207 (68%)

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            MDFKVAG+  GI+A+QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + 
Sbjct: 1   DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 60

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           EF PR+  + I  D+I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A 
Sbjct: 61  EFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAI 120

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
             I  IT   EV +IY G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G
Sbjct: 121 RRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 180

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             V VK+L+ D +G+++LS+K   + +
Sbjct: 181 QEVPVKVLEVDRQGRVRLSIKEATEQS 207


>gi|223557964|gb|ACM90971.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium
           URE12]
          Length = 208

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 137/206 (66%), Gaps = 1/206 (0%)

Query: 489 MDFKVAGTDSGITAMQMDMK-IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           MDFK+AG+ +G+TA QMD+K   GI  +IM  A++QA RGR HIL  M K L + +  + 
Sbjct: 1   MDFKLAGSRNGVTAFQMDVKLASGIPMDIMKEAIEQATRGREHILGLMEKALPQPKSDIS 60

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           ++ PRV  + +P D+I   IG GGK IRGI+E+TGA + +++DGTV ++S     +EAAR
Sbjct: 61  QYAPRVAKLKLPKDKIGAFIGPGGKNIRGIIEKTGANIEVEEDGTVLVSSPDRDSLEAAR 120

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            M+   T   EV K+YKG+VV ++DFGAFV     ++GL+HIS++  +R  +  DV+  G
Sbjct: 121 SMVEQYTLEVEVGKVYKGRVVSIVDFGAFVEILPGKEGLLHISEIDVKRTNRVEDVLSVG 180

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQN 693
             + VK++D ++ GK +LS + + +N
Sbjct: 181 QEIEVKVIDMENSGKFRLSRRALLRN 206


>gi|77415113|ref|ZP_00791153.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
 gi|77158837|gb|EAO70108.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
          Length = 190

 Score =  195 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +FPY +R+V+E+ ES+GSSS A++C  +LALM  GVPI  PVAGIAMGL+ DG ++ +L
Sbjct: 2   EEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVL 61

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +DI G EDH G MDFKVAGT  GITA+QMD+KI GI+  I+  AL QAK+ R  IL+ + 
Sbjct: 62  TDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLH 121

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             ++E R QL    P+++++ I  D+I+ VIG GG+ I  I+ +TG K++ID++G V I 
Sbjct: 122 GAIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIF 181

Query: 597 SSSLAEIEA 605
           SS  A I+ 
Sbjct: 182 SSDQAAIDR 190



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 66/151 (43%), Gaps = 10/151 (6%)

Query: 104 SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYV 162
            + +    +++  V++ +  SS    S+ A + ALM  G+P + PV G  +  I +G   
Sbjct: 1   MEEFPYAIRLVAEVLESNGSSS--QASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNY 58

Query: 163 LNPR----LDEDQGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIE 216
                   L++  G +D  V+GT++ +  ++++     ++  ++ +A+         +++
Sbjct: 59  TVLTDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILD 118

Query: 217 AISKLAKMCAKEPIVIDSKDFSKLEEEMSQM 247
            +        +  +   +     ++ ++ ++
Sbjct: 119 VLHGAIAEP-RPQLAPTAPKIDMIKIDVDKI 148


>gi|255024685|ref|ZP_05296671.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J1-208]
          Length = 199

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 84/194 (43%), Positives = 124/194 (63%)

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           QMD+KI G+S  I+  AL QAK GRLHIL  ++  +S  R +L  + P++  + I P++I
Sbjct: 1   QMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPKIITLNIKPEKI 60

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           ++VIG GGK I  I+++TG K++I+ DGTV IAS   A    A  +I  I    EV ++Y
Sbjct: 61  KDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVY 120

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
            G+V ++  FGAFV      DGLVHIS+L+ ERV K  D++K GD V VK+++ D +G++
Sbjct: 121 TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDQQGRV 180

Query: 684 KLSMKVVDQNTGKP 697
            LS K + +   +P
Sbjct: 181 NLSRKALLEKKEQP 194


>gi|254696417|ref|ZP_05158245.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 185

 Score =  193 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 121/173 (69%), Positives = 145/173 (83%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GR+HIL EM+K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+N
Sbjct: 2   GRVHILGEMAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKIN 61

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+DDGTVKIASS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGL
Sbjct: 62  IEDDGTVKIASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGL 121

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VHISQL+ +RVAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 122 VHISQLAADRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 174


>gi|330981095|gb|EGH79198.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 137

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/137 (47%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
            +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1   MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V+YQE+TYA GKIPGG+ +RE RP+E E L SR+IDR IRPLF + + NE QV+  V+  
Sbjct: 61  VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120

Query: 121 DLESSPHVVSMVAASAA 137
             +  P + +M+  SAA
Sbjct: 121 SKKIDPDIAAMIGTSAA 137



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 325 ISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           ++ + G + R   G+ L    D  +++V  +G ++ +      +G       +HY     
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQAD------AGKGFFPLSVHYQEKTY 68

Query: 384 ATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--GSS 436
           A G++      R G PS +E    RL  R I P+ P    F   +++V  +  +      
Sbjct: 69  AAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFP--EGFMNEVQVVCTVVSTSKKIDP 126

Query: 437 SMATVCGSSLA 447
            +A + G+S A
Sbjct: 127 DIAAMIGTSAA 137


>gi|213024825|ref|ZP_03339272.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 208

 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 129/192 (67%)

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +QMD+KI GI++ IM +AL QAK  RLHIL  M + ++  R  + EF PR+  + I  D+
Sbjct: 2   LQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDK 61

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           I++VIG GG VIR + E+TG  + I+DDGTVKIA++   + + A   I  IT   EV +I
Sbjct: 62  IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRI 121

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           Y  +V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L+ D +G+
Sbjct: 122 YNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 181

Query: 683 IKLSMKVVDQNT 694
           ++LS+K   + +
Sbjct: 182 VRLSIKEATEQS 193


>gi|260760789|ref|ZP_05873132.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260671221|gb|EEX58042.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 176

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/165 (69%), Positives = 138/165 (83%)

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           M+K +S SR +LGEF PR+E+M IP D+IR+VIG GGKVIR IVE+TGAK+NI+DDGTVK
Sbjct: 1   MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 60

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           IASS+  EIEAA++ I SI   PEV +IY+G VVK  DFGAFV+F G RDGLVHISQL+ 
Sbjct: 61  IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 120

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +RVAKT+DVVKEG  VWVKL+ FD+RGK++LSMKVVDQ TGK IV
Sbjct: 121 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIV 165


>gi|94502417|ref|ZP_01308863.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
 gi|94451026|gb|EAT14005.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
          Length = 267

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 157/258 (60%), Gaps = 8/258 (3%)

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKD--GDDFIILSDISGDEDHLGHMDFKVAGT 496
           ATVC S+LALMD+G+ + +PV+GI+MGL+ +    + IILSD+ GDED++G MDFK+ GT
Sbjct: 1   ATVCASTLALMDSGIIVKRPVSGISMGLIMNYLTGEAIILSDLLGDEDYIGDMDFKITGT 60

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           + G+TA QMD+KI GI+ +++   + +AK+G L I+ +M   LS  R  L     ++   
Sbjct: 61  EYGMTACQMDIKISGITYDVLSYTIFKAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTF 120

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD---GTVKIASSSLAEIEAAREMIRSI 613
            IP   I  VIG GGK I+ I   T   + I +    G ++I   +  +++ A   I++I
Sbjct: 121 YIPKKLIGAVIGSGGKRIQEIQVSTETNIKIKEKNYLGVIEILGKNETKLKIAILKIKNI 180

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T VP+V  IYK +V  +  FG FV      +GL+HI ++S   + K    +++GD + VK
Sbjct: 181 TFVPKVGTIYKAKVKNIKKFGVFVKISKYLEGLLHIYEISW--LTKVESFIRKGDIISVK 238

Query: 674 LLDFDDR-GKIKLSMKVV 690
            L  +++  KIKLS K++
Sbjct: 239 YLGKNNKFRKIKLSHKMI 256


>gi|207108928|ref|ZP_03243090.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 190

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 121/187 (64%), Gaps = 2/187 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K Y+  TQ+ + V+ HD+E+  
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDL 122

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAV 185
            V ++ AASAAL L+ +     V   ++  ++ ++++NP      Q SLDLFVSGT++++
Sbjct: 123 QVSALNAASAALFLAHIAPIKSVSACRIARVDNEFLINPNTSLLNQSSLDLFVSGTKESL 182

Query: 186 LMVELEA 192
            M+E+ +
Sbjct: 183 NMIEMRS 189



 Score = 39.1 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSR 390
           + ++   S L+  G T  +  V +   E E   +             Y       G V R
Sbjct: 20  VAKQATSSLLYRLGKTIILASVCV---EREPVSEDFLPLVVQFLEKSYAAGKIPGGFVKR 76

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR--IVSEITESDGSSSMATVCGSSLAL 448
            G     EI   RL  R + P+ P+  ++P  +   ++S   E+D   S      ++L L
Sbjct: 77  EGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASAALFL 136

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
                PI   V+   +  V   ++F+I  + S        +
Sbjct: 137 AHIA-PIKS-VSACRIARV--DNEFLINPNTSLLNQSSLDL 173


>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
 gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
 gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str.
           7]
          Length = 247

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD  +R+DGR  + +R I  ++G+L+   GS++F  G+T+ I  V  G +E   +  
Sbjct: 12  RLILDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAV-YGPKEM--HPR 68

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 69  HLALPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESTILVELFPRTVID 127

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + + ++  +S+AL DAG+P+   +AG+A+G      D +++ D++  ED
Sbjct: 128 VFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVGKA----DGVLVLDLNEPED 183

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA   S +  + +    G ++      AL+ A++G   I N   + +     
Sbjct: 184 MWGEADMPVAMMPS-LKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIRSKYA 242

Query: 545 QLGE 548
           +L E
Sbjct: 243 ELKE 246



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 30/239 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ +   G T V+A V   + +       P    L V Y    ++
Sbjct: 30  RPIKIELGVL-KNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFS 88

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V + V+Q D      
Sbjct: 89  TDE------RKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAG--TR 140

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED   +  + + +  +   
Sbjct: 141 LVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMPSLKQ 200

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           V +++L  N   ++             +  IE I  L K   +         +++L+EE
Sbjct: 201 VALLQLNGNMTPQE-----FRQALEMAQKGIETIYNLEKEAIRSK-------YAELKEE 247


>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
 gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
          Length = 240

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 9/241 (3%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR  + +R I   VG+L+   GS+    G T+ I  V  G RE   Y   
Sbjct: 6   LIREDGLRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAV-YGPREV--YPRH 62

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+   R      Y+  P +T +     APSRREI   ++ R A+  ++        T+ +
Sbjct: 63  LALPDRALIRCRYHMAPFSTSDRKS-PAPSRREIELSKVIREALESLVFSELYPRTTIDV 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +    +  +SLAL DAG+P+   VAG+A G V    D +++ DI   ED 
Sbjct: 122 FIEVLQADGGTRTTGLTAASLALADAGIPMRDLVAGVAAGKV----DGVLVLDIDEVEDE 177

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G  D  +    +GI  + +    G  +      AL  AKRG   I   M + L +  L+
Sbjct: 178 YGEADMPIGY-AAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETLHKKYLK 236

Query: 546 L 546
           +
Sbjct: 237 V 237



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 91/216 (42%), Gaps = 19/216 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + +DG+    YG T ++A V   R +       P    +   Y    ++
Sbjct: 23  RPIKMDVGVL-KNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALIRCRYHMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
                    R+   P+  EI +S++I  ++  L       +    V I V+Q D      
Sbjct: 82  TSD------RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQADGG--TR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLF--VSGTQDA 184
              + AAS AL  +G+P    V G     ++G  VL+   ++++ G  D+    +   D 
Sbjct: 134 TTGLTAASLALADAGIPMRDLVAGVAAGKVDGVLVLDIDEVEDEYGEADMPIGYAAGIDE 193

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           +++++L     + +   +A+       + + + + +
Sbjct: 194 IVLLQLNGVF-TVEEFKEALNLAKRGAEQIYKIMKE 228


>gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
          Length = 245

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 8   KLIFEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 65  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA   S +  + +    G ++      A   A +G   I N   + L    +
Sbjct: 180 MWGEADMPVAMMPS-LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYV 238

Query: 545 QLGE 548
           +  E
Sbjct: 239 EFKE 242



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED   +  + + +  + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V + +L  N ++ +    A          +     +  K
Sbjct: 197 VTLFQLNGN-MTPEEFRQAFDLAVKGINIIYNLEREALK 234


>gi|313619119|gb|EFR90912.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           S4-378]
          Length = 193

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/171 (42%), Positives = 109/171 (63%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           GRLHIL  ++  +SE R +L  + P++  + I P++I++VIG GGK I  I+E+TG K++
Sbjct: 1   GRLHILEHLTSTISEPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKID 60

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+ DGTV IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV      DGL
Sbjct: 61  IEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGL 120

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           VHIS+L+ ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 121 VHISELAHERVGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQP 171


>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
 gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
          Length = 240

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR    +R I   VG+L+   GS+    G T+ I  V  G RE   Y   
Sbjct: 6   LIREDGLRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAV-YGPREV--YPRH 62

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           L+   R      Y+  P +T +     APSRREI   ++ R A+  ++        T+ +
Sbjct: 63  LALPDRALIRCRYHMAPFSTSDRKS-PAPSRREIELSKVIREALESLVFSELYPRTTIDV 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +    +  +SLAL DAG+P+   VAG+A+G V    D +++ DI   ED 
Sbjct: 122 FIEVLQADGGTRTTGLTAASLALADAGIPMRDLVAGVAVGKV----DGVLVLDIDEVEDE 177

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  +    +GI  + +    G ++      AL  AK G   I   M + L +  
Sbjct: 178 YGEADMPIGY-AAGIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETLHKKY 234



 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 19/216 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + +DG+    YG T V+A V   R +       P    +   Y    ++
Sbjct: 23  RPIKMDVGVL-KNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALIRCRYHMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
                    R+   P+  EI +S++I  ++  L       +    V I V+Q D      
Sbjct: 82  TSD------RKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQADGG--TR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLF--VSGTQDA 184
              + AAS AL  +G+P    V G  V  ++G  VL+   ++++ G  D+    +   D 
Sbjct: 134 TTGLTAASLALADAGIPMRDLVAGVAVGKVDGVLVLDIDEVEDEYGEADMPIGYAAGIDE 193

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           +++++L    L+ +   +A+       + + + + +
Sbjct: 194 IVLLQLNG-VLTVEEFREALNLAKWGAEQIYKTMKE 228


>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
 gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
 gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
 gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
          Length = 245

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L+   R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 8   KLILEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 65  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA   S +  + +    G ++      A   A +G   I N   + L    +
Sbjct: 180 MWGEADMPVAMMPS-LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYV 238

Query: 545 QLGE 548
           +  E
Sbjct: 239 EFKE 242



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED   +  + + +  + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V + +L  N ++ +    A          +     +  K
Sbjct: 197 VTLFQLNGN-MTPEEFRQAFDLAVKGINIIYNLEREALK 234


>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
 gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
          Length = 245

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L+   R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 8   KLILEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 65  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEAED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA   S +  + +    G ++      A   A +G   I N   + L    +
Sbjct: 180 MWGEADMPVAMMPS-LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYV 238

Query: 545 QLGE 548
           +  E
Sbjct: 239 EFKE 242



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED   +  + + +  + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEAEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V + +L  N ++ +    A          +     +  K
Sbjct: 197 VTLFQLNGN-MTPEEFRQAFDLAVKGINIIYNLEREALK 234


>gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
          Length = 245

 Score =  178 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR  E +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 8   KLIFEDGKRIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 65  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA   S +  + +    G ++      A   A +G   I N   + L    +
Sbjct: 180 MWGEADMPVAMMPS-LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYV 238

Query: 545 QLGE 548
           +  E
Sbjct: 239 EFKE 242



 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED   +  + + +  + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V + +L  N ++ +    A          +     +  K
Sbjct: 197 VTLFQLNGN-MTPEEFRQAFDLAVKGINIIYNLEREALK 234


>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
 gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
          Length = 245

 Score =  178 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD   R DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 8   KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 65  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  +A   S +  + +    G ++ +    A   A +G   I N   + L    +
Sbjct: 180 MWGEADMPIAMMPS-LNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYV 238

Query: 545 QLGE 548
           +  E
Sbjct: 239 EFKE 242



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  +L+    ED   +  + + +  + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V + +L  + ++ D    A          +     +  K
Sbjct: 197 VTLFQLNGS-MTPDEFRQAFDLAVKGINIIYNLEREALK 234


>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
 gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
           thermophila PT]
          Length = 245

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 12/247 (4%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
             V +   +R+DGR  + +R I  +VG+L+R  GS     GD + I  V  G RE   + 
Sbjct: 3   ERVFIKDGIRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAV-YGPREV--HP 59

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             L    R      YN    +  E  R   P RR     +++R A+ PV+  +      +
Sbjct: 60  RHLQEVNRAIIRYRYNMASFSVEER-RRPGPDRRSYELSKVSREALEPVILTSYFPKSVI 118

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ ++D  +  A +  +S+AL DAG+P+   V+  A G V    D  I+ D   DE
Sbjct: 119 DIFVEVLQADAGTRTAGINAASVALADAGIPMRSLVSSCAAGKV----DGQIVLDPMKDE 174

Query: 484 DHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           D+ G  D  +A T +G IT +QMD     ++ +    A++ AK+G   I     +VL E 
Sbjct: 175 DNFGQADMPIAITPTGEITLLQMDGI---LTRDEFRQAMELAKKGCQEIYKIQRRVLIER 231

Query: 543 RLQLGEF 549
             Q  + 
Sbjct: 232 YSQFEDL 238



 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 22/218 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + +++DG+     G+  V+A V   R +        +   +   Y   +++
Sbjct: 22  RPIKMEVGVL-KRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAIIRYRYNMASFS 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-----FSKCYKNETQVIINVMQHDLES 124
           V +      RR   P      +S++   ++ P+     F K       + + V+Q D   
Sbjct: 81  VEE------RRRPGPDRRSYELSKVSREALEPVILTSYFPKSV---IDIFVEVLQADAG- 130

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
                 + AAS AL  +G+P    V       ++GQ VL+P  DED  G  D+ ++ T  
Sbjct: 131 -TRTAGINAASVALADAGIPMRSLVSSCAAGKVDGQIVLDPMKDEDNFGQADMPIAITPT 189

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             + +      L+ D    A+      C+ + +   ++
Sbjct: 190 GEITLLQMDGILTRDEFRQAMELAKKGCQEIYKIQRRV 227


>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
 gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
 gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
 gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
 gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
 gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
 gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
 gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
          Length = 245

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L+   R+DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 8   KLILEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 65  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 124 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA   S +  + +    G ++      A   + +G   I N   + L    +
Sbjct: 180 MWGEADMPVAMMPS-LNQVTLFQLNGNMTPEEFRQAFDLSVKGINIIYNLEREALKSKYV 238

Query: 545 QLGE 548
           +  E
Sbjct: 239 EFKE 242



 Score =  116 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 18/194 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 26  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  VL+    ED   +  + + +  + + 
Sbjct: 137 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMPSLNQ 196

Query: 185 VLMVELEANQLSED 198
           V + +L  N   E+
Sbjct: 197 VTLFQLNGNMTPEE 210


>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
 gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
 gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
           kodakarensis KOD1]
          Length = 249

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+   GS+    G  + +  V  G R  E +  
Sbjct: 9   KLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAV-YGPR--EIHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR +   ++ R A+ P L         + 
Sbjct: 66  HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPALLLHMFPRTAID 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  EI ++D  + +A +  +SLAL DAG+P+   VA  A G +    D  I+ D++ +ED
Sbjct: 125 VFIEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKI----DGEIVLDLNKEED 180

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G ++++  + A++ A +G   +  +  + L E 
Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFLEAVRLAIKGAKAVYQKQREALKEK 237

Query: 543 RLQLGE 548
            L++ +
Sbjct: 238 YLKIAQ 243



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  VLA V   R +        D   L V Y    ++
Sbjct: 27  RPIKMEVGVL-KNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  L     +    V I ++Q D      
Sbjct: 86  VEE------RKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P +  V       I+G+ VL+   +ED   +  + + +   ++ 
Sbjct: 138 VAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L++D  L+A+       K V +   +  K 
Sbjct: 198 ITLLQMDG-YLTKDEFLEAVRLAIKGAKAVYQKQREALKE 236


>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
 gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
          Length = 250

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD   R DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 13  KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 69

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 70  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 128

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  E 
Sbjct: 129 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETEA 184

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  +A   S +  + +    G ++ +    A   A +G   I N   + L    +
Sbjct: 185 MWGEADMPIAMMPS-LNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYV 243

Query: 545 QLGE 548
           +  E
Sbjct: 244 EFKE 247



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 31  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 89

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 90  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 141

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  +L+    E    +  + + +  + + 
Sbjct: 142 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQ 201

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V + +L  + ++ D    A          +     +  K
Sbjct: 202 VTLFQLNGS-MTPDEFRQAFDLAVKGINIIYNLEREALK 239


>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
 gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
 gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
 gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
 gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
 gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
 gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
 gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
 gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
 gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
 gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
 gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
 gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
 gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
 gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
 gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
          Length = 248

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD   R DGR  + +R I  ++G+L+   GS++F  G+T+AI  V  G +E   +  
Sbjct: 11  KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAV-YGPKEM--HPR 67

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            LS   R    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 68  HLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAID 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +EI ++D  S + ++  +SLAL DAG+P+   +AG+A+G      D +I+ D++  ED
Sbjct: 127 VFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA----DGVIILDLNETED 182

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  +A   S +  + +    G ++ +    A   A +G   I N   + L    +
Sbjct: 183 MWGEADMPIAMMPS-LNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYV 241

Query: 545 QLGE 548
           +  E
Sbjct: 242 EFKE 245



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + + +DG+ +   G T  +A V   + +       P    L V Y    ++
Sbjct: 29  RSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFS 87

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L     +    V   ++Q D  S   
Sbjct: 88  TDE------RKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS--R 139

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +VS++AAS AL  +G+P    + G  V   +G  +L+    ED   +  + + +  + + 
Sbjct: 140 LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPSLNQ 199

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V + +L  + ++ D    A          +     +  K
Sbjct: 200 VTLFQLNGS-MTPDEFRQAFDLAVKGINIIYNLEREALK 237


>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
 gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
          Length = 246

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+   GS+    G  + +  V  G R  E +  
Sbjct: 8   KLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAV-YGPR--EIHPK 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR +   ++ R A+ P +         + 
Sbjct: 65  HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAIILELFPRTAID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAG+P+   V+  A G +    +  I+ D++ +ED
Sbjct: 124 VFIEVLQADAGTRVAGITAASLALADAGIPMKDLVSACAAGKI----EGQIVLDLNKEED 179

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G ++    + A++ A +G   +  +  + L E 
Sbjct: 180 NYGEADVPVAIMPIKNDITLLQMD---GYLTREEFLEAVRLAIKGAKAVYQKQREALKEK 236

Query: 543 RLQLGE 548
            +++ +
Sbjct: 237 YIKIAQ 242



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  +LA V   R +        D   L V Y    ++
Sbjct: 26  RPIKMEVGVL-KNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    V I V+Q D      
Sbjct: 85  VEE------RKKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P +  V       I GQ VL+   +ED   +  + + +   ++ 
Sbjct: 137 VAGITAASLALADAGIPMKDLVSACAAGKIEGQIVLDLNKEEDNYGEADVPVAIMPIKND 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L+ +  L+A+       K V +   +  K 
Sbjct: 197 ITLLQMDG-YLTREEFLEAVRLAIKGAKAVYQKQREALKE 235


>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
 gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
          Length = 243

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD  +R+DGR  + +R +  +VG+L+   GS++   G+T+ +  V  G RE   +  
Sbjct: 8   KLILDNGLRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAV-YGPREM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+   R    + Y+  P +T E     APSRREI   ++ R A+   +        ++ 
Sbjct: 65  HLALPNRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESQILVEQFPRTSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A++  +SLA++DAG+P+   +A +A+G      D +++ D++  ED
Sbjct: 124 VFMEVLQADAGTRLASLMAASLAVVDAGIPVRDLIAAVAVGKA----DGVVVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA   S I  + +    G ++       ++ A +G   I N   + L     
Sbjct: 180 MWGEADMPVAMMPS-IGQINLLQLNGNMTPEEFRQGMELAMKGINIIYNLEKETLKNKYA 238

Query: 545 QLGE 548
           +L E
Sbjct: 239 ELKE 242



 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 30/239 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ +   G T +LA V   R +       P    L V Y    ++
Sbjct: 26  RPMKMEVGVL-KNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L  +  +    V + V+Q D      
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           + S++AAS A++ +G+P    +    V   +G  VL+    ED   +  + + +  +   
Sbjct: 137 LASLMAASLAVVDAGIPVRDLIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMMPSIGQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           + +++L  N   E+        G       I  I  L K   K         +++L+EE
Sbjct: 197 INLLQLNGNMTPEE-----FRQGMELAMKGINIIYNLEKETLKNK-------YAELKEE 243


>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
 gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
          Length = 246

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 12/238 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R DGR     R +  +VG+++   GS+L   G+T  I+    G RE  Q    L   
Sbjct: 12  NGKRSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNT-VILAAVYGPREVPQK--HLELP 68

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +    + Y+  P +T E  +   PSRREI   ++ R A+ PV+        T+ +  E+
Sbjct: 69  DKAILRVRYHMAPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEV 128

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DGS+ +  +  +SLAL DAG+P+   + G+++G V       I+ D++  ED  G  
Sbjct: 129 LQADGSTRVTGITAASLALADAGIPMRDLLVGVSIGKVS----GTIVVDLNQLEDQYGEG 184

Query: 490 DFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           D  +A       IT MQ D   G  +   +  AL  A +    I     + L    ++
Sbjct: 185 DMPLAIMYGRGLITLMQAD---GEWTPTEVNQALDLAFKAAEQIYRLEKETLKSRYVE 239



 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 22/223 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++E G I + ++G+ L  YG TV+LA V   R +       P    L V Y    ++
Sbjct: 25  RPVRMEVGVI-KNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI IS++I  ++ P  +  +  +    V I V+Q D   S  
Sbjct: 84  TSE-----GRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADG--STR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    +VG  +  ++G  V++    ED   +G + L +   +  
Sbjct: 137 VTGITAASLALADAGIPMRDLLVGVSIGKVSGTIVVDLNQLEDQYGEGDMPLAIMYGRGL 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           + +++ +  + +   V  A+           E I +L K   K
Sbjct: 197 ITLMQADG-EWTPTEVNQALDLAFKAA----EQIYRLEKETLK 234


>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
 gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
          Length = 245

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 12/245 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +  R DGR  + +R++   VG++    GS++   G+T A V    G RE   +   LS  
Sbjct: 11  EGRRADGRTPDQMREVKISVGVISNADGSAMVSYGNTTA-VAAVYGPREM--HPRHLSLP 67

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R    + Y+  P +T +  +  APSRREI   ++ R A+ P +         + +  EI
Sbjct: 68  DRAVMRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEI 127

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DGS+ +A++  +SLAL DAGVP+   V G+++GLV    +  ++ D++G ED+ G  
Sbjct: 128 VQADGSTRVASLTAASLALADAGVPMRDLVIGVSVGLV----NGTVVLDLNGLEDNYGEG 183

Query: 490 DFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           D  V    +   IT +Q+D   G  S +    AL+ A +G  ++ ++  + L     ++ 
Sbjct: 184 DMPVGYMPNLGRITLLQLD---GSWSRDKFAEALKLAIKGAEYVYSKAREALKTKYFEIA 240

Query: 548 EFTPR 552
           E   +
Sbjct: 241 EEVAK 245



 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 14/231 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +K+  G I+  +DG+ + +YG T  +A V   R +       P     + R Y +   
Sbjct: 24  REVKISVGVIS-NADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMRVR-YHMAPF 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                R+   P+  EI IS+++  ++ P     +  ++   V + ++Q D   S  V S+
Sbjct: 82  STRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQADG--STRVASL 139

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQD--AVLMV 188
            AAS AL  +G+P    V+G  V  +NG  VL+   L+++ G  D+ V    +   + ++
Sbjct: 140 TAASLALADAGVPMRDLVIGVSVGLVNGTVVLDLNGLEDNYGEGDMPVGYMPNLGRITLL 199

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           +L+ +  S D   +A+           E +   A+   K      +++ +K
Sbjct: 200 QLDGS-WSRDKFAEALKLAIKGA----EYVYSKAREALKTKYFEIAEEVAK 245


>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
 gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
 gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Udp And Gmp
 gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Adp In Double Conformation
 gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With A Single Stranded 10-Mer Poly(A) Rna
 gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Cdp
 gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
           GE5]
          Length = 249

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+  +GS+    G  + I  V  G R  E +  
Sbjct: 9   KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV-YGPR--ELHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR I   ++ + A+ P L         + 
Sbjct: 66  HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILEMFPRTAID 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAG+P+   VA  A G +    +  I+ D++ +ED
Sbjct: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEIVLDLNKEED 180

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G ++++  + A++ A +G   +  +  + L E 
Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQKQREALKEK 237

Query: 543 RLQLGE 548
            L++ +
Sbjct: 238 YLKIAQ 243



 Score =  131 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + + ++G+    +G+  ++A V   R L        D   L V Y    ++
Sbjct: 27  RPIKMEVGVL-KNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D      
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    V       I G+ VL+   +ED   +  + + +   ++ 
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L++D  ++A+       K V +   +  K 
Sbjct: 198 ITLLQMDG-YLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236


>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
 gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
          Length = 248

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 12/246 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR S  +R+I  ++ L  R  GS+ + +G+T+ +  V  G RE +    
Sbjct: 6   EYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAV-YGPREVKNK-- 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S     R      Y+    +TGE  R     RR      + R+    V+         + 
Sbjct: 63  SQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  ++LAL+DAG+P+   V   A G ++       L+D++  ED
Sbjct: 123 IFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSP----LTDLNYIED 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G  D  +A       +T +QMD K   +S +     L+ A  G   I   + + L + 
Sbjct: 179 CAGGPDVPIALLPKHDKVTLLQMDSK---LSLDQFEKVLEHAIEGCKQIHKVIDEQLKKH 235

Query: 543 RLQLGE 548
              L  
Sbjct: 236 TYALVN 241



 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 18/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R +K +    +R +DG+     G T VLA V   R +K+      D   +   Y   T++
Sbjct: 24  RNIKFKLNLFSR-ADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESSPH 127
            G+      +R+ +       IS +I ++   +        TQ+ I   V+Q D      
Sbjct: 83  TGE-----RKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA+ AL+ +G+P +  VV     +I G  + +    ED      + + +    D 
Sbjct: 136 CACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDK 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           V ++++++  LS D     +      CK + + I +  K 
Sbjct: 196 VTLLQMDSK-LSLDQFEKVLEHAIEGCKQIHKVIDEQLKK 234


>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
 gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
 gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 249

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+   GS+    G  + +  V  G R  E +  
Sbjct: 9   KLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAV-YGPR--EIHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR +   ++ R A+ P L         + 
Sbjct: 66  HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPALILEMFPRTAID 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++D  + +A +  +SLAL DAG+P+   VA  A G +    +  I+ D++ +ED
Sbjct: 125 IFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEIVLDLNKEED 180

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G ++ +  + A++ A +G   +  +  + L E 
Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMD---GYLTRDEFIEAVRLAIKGAKAVYQKQREALKEK 237

Query: 543 RLQLGE 548
            L++ E
Sbjct: 238 YLKIAE 243



 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  +LA V   R +        D   L V Y    ++
Sbjct: 27  RPIKMEVGVL-KNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    + I V+Q D      
Sbjct: 86  VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    V       I G+ VL+   +ED   +  + + +   ++ 
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L+ D  ++A+       K V +   +  K 
Sbjct: 198 ITLLQMDG-YLTRDEFIEAVRLAIKGAKAVYQKQREALKE 236


>gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506]
 gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506]
          Length = 237

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+L+   GS L   G+T  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D             +P+   +A ++ G+V    D    
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLSWMKTRGMLATIPLRDHIAAVSCGIV----DGEPR 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   H D     T   G   +Q   +    +E+     L  A++G   +++  
Sbjct: 173 LDLDYVEDSSAHTDVNFVMTGTGGFVEIQGTAEKTPFTEDEFGAMLGLARKGVAKLVDLQ 232

Query: 536 SKVLS 540
              +S
Sbjct: 233 KLAVS 237



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E G + R ++G+ L  +GET VL     +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSFERGVL-RHAEGSCLVKFGETHVLVAATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  HER----TRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+  A  AL            L+ +P    +       ++G+  L+    ED    
Sbjct: 125 TRTASITGAWIALHDCLSWMKTRGMLATIPLRDHIAAVSCGIVDGEPRLDLDYVEDSSAH 184

Query: 173 -SLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
             ++  ++GT   V  ++  A +   +ED     +         +++   
Sbjct: 185 TDVNFVMTGTGGFV-EIQGTAEKTPFTEDEFGAMLGLARKGVAKLVDLQK 233


>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
 gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
 gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
          Length = 250

 Score =  173 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+  +GS+    G  + I  V  G R  E +  
Sbjct: 9   KLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAV-YGPR--EIHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR I   ++ R A+ P L         + 
Sbjct: 66  HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIRGALEPALILEMFPRTAID 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAG+P+   VA  + G +    +  I+ D++ +ED
Sbjct: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKI----EGEIVLDLNKEED 180

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E 
Sbjct: 181 NYGEADVPVAIMPIKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEK 237

Query: 543 RLQLGE 548
            L++ +
Sbjct: 238 YLKIAQ 243



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K++ G + + ++G+    +G+  ++A V   R +        D   L V Y    ++
Sbjct: 27  RPIKMKVGVL-KNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D      
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    V       I G+ VL+   +ED   +  + + +   ++ 
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMPIKND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L+++  ++A+       K V +   +  K 
Sbjct: 198 ITLLQMDG-YLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236


>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
 gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
          Length = 249

 Score =  173 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+   GS+    G  + I  V  G +  E +  
Sbjct: 9   KLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAV-YGPK--ELHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR I   ++ + A+ P L         + 
Sbjct: 66  HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILEMFPRTAID 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAG+P+   VA  A G +    +  I+ D++ +ED
Sbjct: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEIVLDLNKEED 180

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L + 
Sbjct: 181 NYGEADVPVAIMPLRNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKDK 237

Query: 543 RLQLGE 548
            L++ +
Sbjct: 238 YLKIAQ 243



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + + +DG+    +G+  ++A V   + L        D   L V Y    ++
Sbjct: 27  RPIKMEVGVL-KNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D      
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    V       I G+ VL+   +ED   +  + + +   ++ 
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLRND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L+++  ++A+       K V +   +  K 
Sbjct: 198 ITLLQMDG-YLTKEEFIEAVKLAIKGAKAVYQKQREALKD 236


>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
 gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
          Length = 246

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 12/238 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R DGR     R +  +VG++    GS+L   G+T  I+    G RE  Q    L   
Sbjct: 12  NDRRSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNT-VILAAVYGPREVPQK--HLELP 68

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +    + Y+ +P +T E  +   PSRREI   ++ R A+ PV+        T+ +  E+
Sbjct: 69  DKAILRVRYHMIPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEV 128

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DGS+ +  +  +SLAL DAG+P+   + G+++G V       I+ D++  ED  G  
Sbjct: 129 LQADGSTRVTGITAASLALADAGIPMRDLLVGVSVGKVS----GTIIVDLNQLEDQYGEG 184

Query: 490 DFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           D  +A       IT MQ D   G  +   +  A++ A +    I      VL    ++
Sbjct: 185 DMPLAIMYGRGLITLMQAD---GEWTPTEVNQAVELAFKAAEQIYRLQKDVLKNKYVE 239



 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 22/230 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++E G I+  ++G+ L  YG TV+LA V   R +       P    L V Y    ++
Sbjct: 25  RPVRMEVGVIS-NAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILRVRYHMIPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI IS++I  ++ P  +  +  +    V I V+Q D   S  
Sbjct: 84  TSE-----GRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADG--STR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    +VG  V  ++G  +++    ED   +G + L +   +  
Sbjct: 137 VTGITAASLALADAGIPMRDLLVGVSVGKVSGTIIVDLNQLEDQYGEGDMPLAIMYGRGL 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           + +++ +  + +   V  A+           E I +L K   K   V  S
Sbjct: 197 ITLMQADG-EWTPTEVNQAVELAFKAA----EQIYRLQKDVLKNKYVEPS 241


>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
 gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
          Length = 246

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 13/244 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+   GS+    G  + +  V  G R  E +  
Sbjct: 8   KLIDENGYRVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAV-YGPR--EIHPK 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR +   ++ R A+ P +        ++ 
Sbjct: 65  HLQKPDRAILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPAVILELFPRTSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++D  + +A +  +SLAL DAG+P+   VA  A G +    D  I+ D++ +ED
Sbjct: 124 IFIEVLQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKI----DGEIVLDLNKEED 179

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E 
Sbjct: 180 NYGEADVPVAIMPIKNDITLLQMD---GYLTKEEFLEAVKLAIKGAKAVYQKQREALREK 236

Query: 543 RLQL 546
            L++
Sbjct: 237 YLKI 240



 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 98/220 (44%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R +K+E G + + +DG+    +G+  ++A V   R +        D   L V Y    ++
Sbjct: 26  RKIKMEVGVL-KSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILRVRYNMAPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    + I V+Q D      
Sbjct: 85  VEE------RKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P +  V       I+G+ VL+   +ED   +  + + +   ++ 
Sbjct: 137 VAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPIKND 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L+++  L+A+       K V +   +  + 
Sbjct: 197 ITLLQMDG-YLTKEEFLEAVKLAIKGAKAVYQKQREALRE 235


>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
 gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
          Length = 254

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 12/243 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             ++    R+DGR    +R I  + G+L+R  GS     G  + +  V  G RE   +  
Sbjct: 5   EKLMIDGKRLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAV-YGPREV--HPR 61

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R      YN    +  E  R G P RR I   +++R A+  V+ +       + 
Sbjct: 62  HLQNASRAIVRYRYNMAAFSVEERKRPG-PDRRSIEISKVSREALESVVLEELYPRSAVD 120

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  EI ++D  + +A +  +S+AL DAG+P+   V+  ++G +    D  ++ D++ DED
Sbjct: 121 IFVEILQADAGTRVAGINAASVALADAGIPMRCLVSACSVGKI----DGEVVLDLNKDED 176

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           + G  D  VA    G +T  QMD   G ++E     AL  A  G   +     + L E  
Sbjct: 177 NYGQADLPVAVNQFGEVTLCQMD---GHLTEEEFGKALDMAVDGCKKLHEMQKQALVEKY 233

Query: 544 LQL 546
             +
Sbjct: 234 GTM 236



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 17/221 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K + G + +++DG+    +G   V+A V   R +            +   Y    ++
Sbjct: 23  RPIKFKAGVL-KRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVRYRYNMAAFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   ++  +  +    ++   + + ++Q D      
Sbjct: 82  VEE------RKRPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQADAG--TR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           V  + AAS AL  +G+P    V    V  I+G+ VL+   DED  G  DL V+  Q   +
Sbjct: 134 VAGINAASVALADAGIPMRCLVSACSVGKIDGEVVLDLNKDEDNYGQADLPVAVNQFGEV 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCA 226
            +      L+E+    A+    + CK + E   + L +   
Sbjct: 194 TLCQMDGHLTEEEFGKALDMAVDGCKKLHEMQKQALVEKYG 234


>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
 gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
          Length = 249

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 9/234 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR  + +R +  +VG+L+  +GS+L   G T+ +  V  G RE      
Sbjct: 12  RLLREDGTRLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAV-FGPREA--LPR 68

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            ++   R    + Y+  P +T E     APSRREI   ++ R A+  V+        ++ 
Sbjct: 69  HIALPDRATLRVRYHMAPFSTSERKS-PAPSRREIELSKVIREALESVVFSEQFPRTSID 127

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG +  A +  +S+AL DAG+P+   V G+A+G +    +  ++ DIS  ED
Sbjct: 128 IFIEVLQADGGTRTAGLTAASVALADAGIPMKDLVIGVAVGKI----EGNLVLDISELED 183

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             G  D  +    + I  + +    G ++   +   ++ A +G   I     + 
Sbjct: 184 EYGEADLPLGIAPN-IGEIVLLQLNGVLTPEELKAGIELAWKGVDSIYKIAKEA 236



 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 23/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G + + ++G+ L  YG T VLA V   R         P    L V Y    ++
Sbjct: 30  RPVKIKVGVL-KNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLRVRYHMAPFS 88

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++  +    +  +    + I V+Q D      
Sbjct: 89  TSE------RKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQADGG--TR 140

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              + AAS AL  +G+P +  V+G  V  I G  VL+    ED   +  L L ++     
Sbjct: 141 TAGLTAASVALADAGIPMKDLVIGVAVGKIEGNLVLDISELEDEYGEADLPLGIAPNIGE 200

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
           +++++L      E+     +  G       +++I K+AK       +   ++ 
Sbjct: 201 IVLLQLNGVLTPEE-----LKAGIELAWKGVDSIYKIAKEALYAKYIKAFEEV 248


>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
 gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
 gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 249

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+  +GS+    G  + I  V  G R  E +  
Sbjct: 9   KLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAV-YGPR--ELHSK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R    + YN  P +  E  + G P RR I   ++ + A+ P L        ++ 
Sbjct: 66  HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILEMFPRTSID 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAG+P+   VA  A G +    +  I+ D++ +ED
Sbjct: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEIVLDLNKEED 180

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E 
Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMD---GYLTKEEFIEAVRLAIKGAKAVYQKQREALKEK 237

Query: 543 RLQLGE 548
            L++ +
Sbjct: 238 YLKIAQ 243



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 102/235 (43%), Gaps = 23/235 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K++ G + + ++G+    +G   ++A V   R L        D   L V Y    ++
Sbjct: 27  RPIKMKVGVL-KNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++I  ++ P  +     +    V I V+Q D      
Sbjct: 86  VEE------RKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    V       I G+ VL+   +ED   +  + + +   ++ 
Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           + +++++   L+++  ++A+       K V +   +      KE  +  +++  +
Sbjct: 198 ITLLQMDG-YLTKEEFIEAVRLAIKGAKAVYQKQRE----ALKEKYLKIAQEVEE 247


>gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
 gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
          Length = 248

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+   GS+    G  + +  V  G R  E +  
Sbjct: 8   KLIDENGRRIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAV-YGPR--EIHPK 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L         + YN  P +  E  + G P RR +   ++ R A+ P L         + 
Sbjct: 65  HLQRPDTAVLRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPALILEMFPRTVVD 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAGVP+   VA  A G +    D  I+ D++ DED
Sbjct: 124 VFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKI----DGEIVLDLNKDED 179

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E 
Sbjct: 180 NYGEADVPVAIMPLKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEK 236

Query: 543 RLQLGE 548
            L++ +
Sbjct: 237 YLKIAQ 242



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R + +E G + + +DG+    +G+  +LA V   R +        D   L V Y    ++
Sbjct: 26  RKIHMEVGVL-KNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    V I V+Q D      
Sbjct: 85  VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    V       I+G+ VL+   DED   +  + + +   ++ 
Sbjct: 137 VAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMPLKND 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L+++  ++A+       K V +   +  K 
Sbjct: 197 ITLLQMDG-YLTKEEFIEAVKLAIKGAKAVYQKQREALKE 235


>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
 gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
 gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
           protein (Rrp41p) [Thermococcus gammatolerans EJ3]
          Length = 249

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R I  +VG+L+   GS+    G  + +  V  G R  E +  
Sbjct: 9   KLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAV-YGPR--EIHPK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L         + YN  P +  E  + G P RR +   ++ R A+ P L         + 
Sbjct: 66  HLQRPDTAVLRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPALILEMFPRTVVD 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAGVP+   VA  A G +    D  I+ D++ DED
Sbjct: 125 VFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKI----DGEIVLDLNKDED 180

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  VA     + IT +QMD   G +++   + A++ A +G   +  +  + L E 
Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMD---GYLTKEEFIEAVKLAIKGAKAVYQKQREALKEK 237

Query: 543 RLQLGE 548
            L++ +
Sbjct: 238 YLKIAQ 243



 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R + +E G + + +DG+    +G+  +LA V   R +        D   L V Y    ++
Sbjct: 27  RKIHMEVGVL-KNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    + IS++I  ++ P  +     +    V I V+Q D      
Sbjct: 86  VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+P    V       I+G+ VL+   DED   +  + + +   ++ 
Sbjct: 138 VAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMPLKND 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++   L+++  ++A+       K V +   +  K 
Sbjct: 198 ITLLQMDG-YLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236


>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
 gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
 gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
           DSM 4184]
          Length = 246

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 12/244 (4%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +    VR DGR  + +R+++  VG++    GS++   G T A V    G RE   +   L
Sbjct: 8   LFQNGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTA-VAAVYGPREM--HPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S   R    + Y+  P +T +  +   P+RREI   ++ R A+ P +         + + 
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVF 124

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            EI ++DGS+ +A++  +SLAL DAGV +   V G+++GLV    D  ++ D++G ED  
Sbjct: 125 IEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLV----DGAVVLDLNGLEDQY 180

Query: 487 GHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           G  D  V    +    T +Q+D   G  + +  + AL  A +G   +  +    L    +
Sbjct: 181 GEGDLPVGYMPNLKRFTLLQLD---GAWTRDKFLEALNLAIKGAEFVYQKARDALKSKYM 237

Query: 545 QLGE 548
            + E
Sbjct: 238 TIAE 241



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +  G ++  +DG+ + +YG T  +A V   R +       P     + R Y +   
Sbjct: 24  REVNITVGIVS-NADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVR-YHMAPF 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                R+   PT  EI IS+++  ++ P  +  +  ++   V I ++Q D   S  V S+
Sbjct: 82  STKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADG--STRVASL 139

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQD-AVLMVE 189
            AAS AL  +G+     V+G  V  ++G  VL+   L++  G  DL V    +     + 
Sbjct: 140 TAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMPNLKRFTLL 199

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
                 + D  L+A+           E + + A+   K   +  ++D 
Sbjct: 200 QLDGAWTRDKFLEALNLAIKGA----EFVYQKARDALKSKYMTIAEDI 243


>gi|310657898|ref|YP_003935619.1| nucleoside-triphosphatase [Clostridium sticklandii DSM 519]
 gi|308824676|emb|CBH20714.1| Nucleoside-triphosphatase [Clostridium sticklandii]
          Length = 443

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 132/349 (37%), Gaps = 46/349 (13%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
             +R+I       +   GS L   GDT  +   ++    +E+    L  T        Y+
Sbjct: 6   NMLREIKITKNFTKYAEGSVLIEFGDTVVLCNASI----EEKVPPFLKNTGTGWISAEYS 61

Query: 380 FLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
            LP +T +        G    R     RL  RA+  V+        T+ I  ++ ++DG 
Sbjct: 62  MLPRSTHQRKIRDSARGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQADGG 121

Query: 436 SSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  A++ G+ +AL D              PI+  V+ +++G+VK       + D+  +ED
Sbjct: 122 TRTASITGAFVALCDAMAKLYEKEAIKSFPINAFVSAVSVGIVKGKP----VLDLCYEED 177

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
               +D  V  TD G    +Q   +    S+N ++  L  A++G   ++    + + E  
Sbjct: 178 SSAEVDMNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIGEPI 237

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------VNIDDDGTVKIAS 597
             L    P+ + M I       +  +G  +    +E    K      + I++ G    ++
Sbjct: 238 SSLISPRPK-QEMVIASSNSHKIEEIGSILADFGIELLSLKDVGLEGLEIEETG----ST 292

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
                I  A+E+++             G+     D G  V   G R G+
Sbjct: 293 FEENAIIKAKEVMK-----------LTGKAAIADDSGLMVDVLGGRPGV 330



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 92/259 (35%), Gaps = 36/259 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           R +K+ T    + ++G+VL  +G+TVVL     +  +       G  +     +   R+ 
Sbjct: 9   REIKI-TKNFTKYAEGSVLIEFGDTVVLCNASIEEKVPPFLKNTGTGWISAEYSMLPRST 67

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSP 126
              KI         +       I R+I R++R +       E    +  +V+Q D     
Sbjct: 68  HQRKIRDSA---RGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQADGG--T 122

Query: 127 HVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SL 174
              S+  A  AL            +   P    V    V  + G+ VL+   +ED    +
Sbjct: 123 RTASITGAFVALCDAMAKLYEKEAIKSFPINAFVSAVSVGIVKGKPVLDLCYEEDSSAEV 182

Query: 175 DLFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA----- 226
           D+ V  T     +      +    S++ ++  +       + +++   +           
Sbjct: 183 DMNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIGEPISSLIS 242

Query: 227 ---KEPIVIDSKDFSKLEE 242
              K+ +VI S +  K+EE
Sbjct: 243 PRPKQEMVIASSNSHKIEE 261


>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
 gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
           DSM 5348]
          Length = 245

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD   R+DGR  + +R +  ++G+L+   GSSL   G+T+ I  V  G RE   +  
Sbjct: 8   KLILDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAV-YGPREM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+   R    + Y+  P +T E      PSRREI   ++ R A+   +        ++ 
Sbjct: 65  HLALPNRATLRVRYHMTPFSTDERKS-PVPSRREIELSKVIREALESSILVEQFPRSSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A++  +SLA++DAG+P+   +A +A+G      D +++ D++  ED
Sbjct: 124 VFMEVIQADAGTRLASLMAASLAVVDAGIPVKDVIAAVAVGKA----DGVVVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G  D  VA   S   IT +Q++  +   ++      L+ A +G   I N   +VL   
Sbjct: 180 MWGEADMPVAMLPSLGQITLIQLNGNM---TQQEFKQGLELAYKGISTIYNLEKEVLRNK 236

Query: 543 RLQLGE 548
             ++ E
Sbjct: 237 FAEIHE 242



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 102/239 (42%), Gaps = 30/239 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ L   G T ++A V   R +       P    L V Y    ++
Sbjct: 26  RPMKMEIGVL-KNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L  +  ++   V + V+Q D      
Sbjct: 85  TDE------RKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           + S++AAS A++ +G+P +  +    V   +G  VL+    ED   +  + + +  +   
Sbjct: 137 LASLMAASLAVVDAGIPVKDVIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMLPSLGQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
           + +++L  N +++      +   +     +      L K   +         F+++ EE
Sbjct: 197 ITLIQLNGN-MTQQEFKQGLELAYKGISTIYN----LEKEVLRNK-------FAEIHEE 243


>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
 gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
 gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
          Length = 239

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 13/247 (5%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +    ++ +  +R+DGR  + +R +  Q G+L+R  GS+    G  + IV    G R 
Sbjct: 1   MEERPERLISEDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANK-IVAAVYGPR- 58

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
            E +        R      YN  P +  E  R G P RR I   +L++ A+ P +     
Sbjct: 59  -ELHPRHKQKPDRAVVRFRYNMAPFSVDERKRPG-PDRRSIEISKLSKEALEPAIFTEYY 116

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               + I  E+ ++D  +  A +  +S+AL DAG+ +   VA  A G V    +  ++ D
Sbjct: 117 PRTAIDIFVEVLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKV----EGKVVLD 172

Query: 479 ISGDEDHLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
               ED  G  D  +A       IT +QMD   G ++      A++ AK+G   +  E  
Sbjct: 173 PMYYEDGYGEADVPLAMMPKEGKITLLQMD---GDMTPGEFKQAVKLAKKGCKIVYKEQR 229

Query: 537 KVLSESR 543
           + L E  
Sbjct: 230 RALKEKY 236



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV----NYQERTYA 69
           RPLK++ G + +++DG+     G   ++A V   R L       P        Y    ++
Sbjct: 25  RPLKIQAGVL-KRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVRFRYNMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   ++ P        +    + + V+Q D      
Sbjct: 84  VDE------RKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQADAG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              + AAS AL  +G+     V       + G+ VL+P   ED   +  + L +   +  
Sbjct: 136 CAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAMMPKEGK 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +++++ + ++      A+      CK V +   +  K 
Sbjct: 196 ITLLQMDGD-MTPGEFKQAVKLAKKGCKIVYKEQRRALKE 234


>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
          Length = 245

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R + A++G+  +  GS+   +G+T+A+ VV  G  E  +   
Sbjct: 5   ELLSDQGYRLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-VRMSR 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +T E  R     R+        ++     +         + 
Sbjct: 63  SKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I +SDG +  A V  ++LA++DAG+P+   V     G V +      L+D+   E+
Sbjct: 123 IYVKILQSDGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFVDETP----LADLCHAEE 178

Query: 485 HLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A    G  I  +QMD ++       ++ A   A +G   +L+++ +  
Sbjct: 179 SGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQVVRQH 235



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 86/225 (38%), Gaps = 19/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTY 68
           R ++   G  A Q+DG+     G T  LA V     ++        D   +   Y   T+
Sbjct: 23  RKVQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVINCQYSMATF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV--MQHDLESSP 126
           +  +      +R          +S  + ++            +Q+ I V  +Q D  +  
Sbjct: 82  STAE-----RKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYS 136

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
               + AA+ A++ +G+P    V      +++   + +    E+ G   SL L +     
Sbjct: 137 --ACVNAATLAVIDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGG 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + +++++A  L +D +   +      CK V + + ++ +   +E
Sbjct: 195 HIALLQMDAR-LHQDHLETLMEAAMTACKGVSKVLDQVVRQHLQE 238


>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
 gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 240

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 13/237 (5%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            VR DGR  + +R +  + G+L+R  GSS    G  + + V   G RE    +  L    
Sbjct: 15  SVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKIL-VAVYGPREA--QIRKLQRPD 71

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R      YN  P +  E  R G P RR +   ++   A+ P L         + +  E+ 
Sbjct: 72  RAVIRCRYNMAPFSVEERKRPG-PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 130

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E++G +  A +  +S+AL DAG+P+   V   A G V D     ++ D+S +ED  G  D
Sbjct: 131 EAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQ----VVLDLSEEEDKEGQAD 186

Query: 491 FKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
             VA       IT +Q D   G ++      AL  A  G L I     + L +   +
Sbjct: 187 VPVAILPRTREITLLQSD---GNLTPEEFERALDLAVEGCLRIHEVQKEALRKRYGE 240



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 20/224 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           RPLK+E G + R +DG+    +G   +L  V   R  +       D   +   Y    ++
Sbjct: 27  RPLKIEAGILER-ADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++   ++RP  +  K  ++   V I V++   E    
Sbjct: 86  VEE------RKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEA--EGGTR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVS--GTQDA 184
              + AAS AL  +G+P    VV      +  Q VL+   +ED +G  D+ V+       
Sbjct: 138 CAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTRE 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAK 227
           + +++ + N L+ +    A+      C  + E   + L K   +
Sbjct: 198 ITLLQSDGN-LTPEEFERALDLAVEGCLRIHEVQKEALRKRYGE 240


>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
          Length = 245

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQH 235



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 78/219 (35%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++       P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A+M +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 AATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +++  L ED +   +       + V   + ++ +   +E
Sbjct: 201 MDSR-LHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQE 238


>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 231

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 13/237 (5%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            VR DGR  + +R +  + G+L+R  GSS    G  + + V   G RE    +  L    
Sbjct: 6   SVREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKIL-VAVYGPREA--QIRKLQRPD 62

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R      YN  P +  E  R G P RR +   ++   A+ P L         + +  E+ 
Sbjct: 63  RAVIRCRYNMAPFSVEERKRPG-PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 121

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E++G +  A +  +S+AL DAG+P+   V   A G V D     ++ D+S +ED  G  D
Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVNDQ----VVLDLSEEEDKAGQAD 177

Query: 491 FKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
             VA       IT +Q D   G +S++    AL  A  G L I     + L +   +
Sbjct: 178 VPVAILPRTREITLLQSD---GNLSDDEFERALDLAVEGCLRIHEVQKEALRKRYGE 231



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 20/224 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           RPL++E G + R +DG+    +G   +L  V   R  +       D   +   Y    ++
Sbjct: 18  RPLRIEAGILER-ADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFS 76

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++   ++RP  +  K  ++   V I V++   E    
Sbjct: 77  VEE------RKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEA--EGGTR 128

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              + AAS AL  +G+P    VV      +N Q VL+   +ED   Q  + + +      
Sbjct: 129 CAGITAASVALADAGIPMRDMVVACAAGKVNDQVVLDLSEEEDKAGQADVPVAILPRTRE 188

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAK 227
           + +++ + N LS+D    A+      C  + E   + L K   +
Sbjct: 189 ITLLQSDGN-LSDDEFERALDLAVEGCLRIHEVQKEALRKRYGE 231


>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
 gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
 gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
 gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
 gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
          Length = 245

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 8/231 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     +A       I  ++MD ++       ++ A  QA RG   +L+
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLD 229



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 71/203 (34%), Gaps = 7/203 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++       P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A+M +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 AATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECK 212
           +++  L ED +   +       +
Sbjct: 201 MDSR-LHEDHLEQVLEAAAQAAR 222


>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
 gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
          Length = 253

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 12/236 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGR    +R I  Q G+L+R  GS     G  + +  V  G RE   +   L   
Sbjct: 10  DGKRLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAV-YGPREV--HPRHLQQA 66

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                   YN    +  E  R G P RR I   +++R A+  V+ +       + I  EI
Sbjct: 67  SNAIVRYRYNMASFSVEERKRPG-PDRRSIEISKVSREALESVILKELYPRSAIDIFVEI 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++D  + +A +  +S+AL DAG+P+   V+  A+G   D     ++ D++ DED+ G  
Sbjct: 126 LQADAGTRVAGINAASVALADAGIPMKCLVSACAVGKADDT----LVLDLNKDEDNYGQA 181

Query: 490 DFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           D  +A    G IT  QMD   G ++ +    AL  A  G   +     + L E   
Sbjct: 182 DLPIAMNQFGEITLCQMD---GHMTSDEFSTALNMAIEGCKKLHELQKQALVEKYA 234



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 19/233 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K + G + +++DG+    +G   V+A V   R +            +   Y   +++
Sbjct: 23  RPIKFQAGVL-KRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAIVRYRYNMASFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   ++  +  K    ++   + + ++Q D      
Sbjct: 82  VEE------RKRPGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQADAG--TR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
           V  + AAS AL  +G+P +  V    V   +   VL+   DED  G  DL ++  Q   +
Sbjct: 134 VAGINAASVALADAGIPMKCLVSACAVGKADDTLVLDLNKDEDNYGQADLPIAMNQFGEI 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAK--EPIVIDSKD 236
            +      ++ D    A+      CK + E   + L +  A+   PI ++  +
Sbjct: 194 TLCQMDGHMTSDEFSTALNMAIEGCKKLHELQKQALVEKYARGVAPIAVEVPE 246


>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
 gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
 gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
          Length = 255

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  E +R I  +VG+L    GS+L   G T+ I  V  G RE   +   ++   R
Sbjct: 24  IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAV-YGPREA--HPRHVALPDR 80

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 Y+  P +T E  +  AP+RRE+   ++ R A+  V+         + +  E+ +
Sbjct: 81  AIIRCRYHMAPFSTAER-KTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQ 139

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           SDG +  A +  +SLAL DAG+ +   VAG+A+G V    D +++ DI   ED+    D 
Sbjct: 140 SDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKV----DGVLVLDIDEIEDNYAEADM 195

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            VA   S +  + +    G ++ +  V AL+ A++G   I N   + L +  +++ 
Sbjct: 196 PVAMAPS-LDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVS 250



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 19/217 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+++E G ++  +DG+ L  YG T V+A V   R          D   +   Y    ++
Sbjct: 35  RPIRMEVGVLS-NADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMAPFS 93

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
             +      R+   PT  E+ +S++I  ++  +       +    V + V+Q D      
Sbjct: 94  TAE------RKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGG--TR 145

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLF--VSGTQDA 184
             ++ AAS AL  +G+     V G  V  ++G  VL+   ++++    D+   ++ + D 
Sbjct: 146 TAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPSLDK 205

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           VL+++L    L+ D  + A+       + +     + 
Sbjct: 206 VLLLQLNG-VLTHDEFVKALELARKGIQVIYNLQKEA 241


>gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
          Length = 242

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           V++   +R+DGR  E +R +   +G+L+  +GS+L   G+T+A+  V  G RE       
Sbjct: 6   VLIRDGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAV-YGPREA--LPKH 62

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +S   R    + Y+  P +T E     APSRREI   ++ R A+  V+  +     ++ +
Sbjct: 63  ISLPDRAILRVRYHMAPFSTTERKS-PAPSRREIELSKVIREALESVVFTSQFPRASIDV 121

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             EI ++DG +    +  +SLAL DAG+P+   V G+A+G V    D +++ DI+  ED 
Sbjct: 122 FIEILQADGGTRTTGLTAASLALADAGIPMRDLVIGVAVGKV----DGVLVLDINELEDE 177

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGG-ISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            G  D  V    +  T   + +++ G ++      AL  A +G   I     + +     
Sbjct: 178 YGEADLPVGIMPN--TGEIVLLQLNGVLTSGEFKQALDMAYKGVEQIYKTAKEAMYRKYY 235

Query: 545 QL 546
           ++
Sbjct: 236 KM 237



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 30/241 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++  G + + ++G+ L  YG T  LA V   R         P    L V Y    ++
Sbjct: 23  RPVRIALGVL-KNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILRVRYHMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++  +   S+  +    V I ++Q D      
Sbjct: 82  TTE------RKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQADGG--TR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVS--GTQDA 184
              + AAS AL  +G+P    V+G  V  ++G  VL+   L+++ G  DL V        
Sbjct: 134 TTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDEYGEADLPVGIMPNTGE 193

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
           +++++L    L+      A+   +      +E I K AK           + + K+ EE+
Sbjct: 194 IVLLQLNG-VLTSGEFKQALDMAYKG----VEQIYKTAKEAM-------YRKYYKMFEEV 241

Query: 245 S 245
            
Sbjct: 242 R 242


>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
           V24Sta]
 gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
 gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta]
          Length = 246

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 12/244 (4%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   VR DGR  + +R++   VG++    GS++   G T A V    G RE   +   L
Sbjct: 8   LLQGGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTA-VAAVYGPREM--HPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +         + + 
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVF 124

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            EI ++DGS+ +A++  +SLAL DAG+ +   V G+++GLV    D  ++ D++G ED  
Sbjct: 125 IEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLV----DGTVVLDLNGLEDQY 180

Query: 487 GHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           G  D  V    +    T +Q+D   G    + ++ AL  A +G   +  +    L    +
Sbjct: 181 GEGDLPVGYMPNLRRYTLLQLD---GAWGRDKLLEALNLAVKGAEFVYQKARDALKNRYM 237

Query: 545 QLGE 548
            + E
Sbjct: 238 AIAE 241



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 7/169 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +++  G I+  +DG+ + +YG T  +A V   R +       P     + R Y +   
Sbjct: 24  REVQISVGVIS-NADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVR-YHMAPF 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                R+   P+  EI IS+++  ++ P  +  +  ++   V I ++Q D   S  V S+
Sbjct: 82  STKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADG--STRVASL 139

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS 179
            AAS AL  +G+     V+G  V  ++G  VL+   L++  G  DL V 
Sbjct: 140 TAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVG 188


>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG6J21]
          Length = 245

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 13/240 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR     R ++ +VG+L+   GS+    G  + +  V  G R+   +   
Sbjct: 10  LLDENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGV-FGPRDV--HPKH 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +S        + Y+  P +  E     APSRREI   ++ + A+ P +         + +
Sbjct: 67  MSNPDTGILRVRYHMAPFSVSERKN-PAPSRREIEISKVLKEALEPAVILEKFPRTAIDV 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +  A +  +S+AL DAG+P+   V   A G V D     ++ D++ +ED 
Sbjct: 126 YLEVLQADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKVAD----ALILDVNNEEDQ 181

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  +    +   IT +Q+D     ++ +     ++    G   +       L E  
Sbjct: 182 AGQADMPIGYMPNFGKITLLQLDGV---LTTDEFKKCIELGIEGCKQVYEIQKNALREKY 238



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 23/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R + ++ G + + +DG+    +G   +LA V   R +       P    L V Y    ++
Sbjct: 27  RKVTIKVGVL-KNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D      
Sbjct: 86  VSE------RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQADGG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
             ++ AAS AL  +G+P    V       +    +L+   +ED   Q  + +        
Sbjct: 138 CAALDAASVALADAGIPMRDMVCSCAAGKVADALILDVNNEEDQAGQADMPIGYMPNFGK 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           + +++L+   L+ D     I  G   CK V     ++ K   +E   
Sbjct: 198 ITLLQLDG-VLTTDEFKKCIELGIEGCKQVY----EIQKNALREKYF 239


>gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116]
 gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3]
 gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116]
 gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3]
          Length = 240

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 59  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDD----VL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQ 234

Query: 536 SKV 538
              
Sbjct: 235 KAA 237



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 14  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 72

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 73  ----HSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQADGG-- 126

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +    + +    ++    
Sbjct: 127 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVEDSAAD 186

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + ++  +         ++ A      
Sbjct: 187 TDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALA 239


>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
          Length = 249

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 7/238 (2%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R+I+ ++G+  +  GS+   +G+T+ +  V  G  E  Q   
Sbjct: 2   NIISEHGFRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAV-YGPHEPRQR-- 58

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +T E        RR +   RL  +A    +         + 
Sbjct: 59  NRTQEDRCTVNCQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAILVENYPHAQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DGS   A V  ++LAL DAGVP+   VA  +     DG      +D+S  E+
Sbjct: 119 IFCELLQADGSHLAACVNAATLALADAGVPMRGLVAAASCACALDG---TPCADVSAREE 175

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
                   +A   SG+  + +      +  + ++  LQ A+     + + +   +S  
Sbjct: 176 SNVMPRITIANI-SGMDEIILTELQNRLHRDHLIPMLQCARMAASQVHSCLEVAVSAH 232



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 15/168 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYA 69
           R +  + G    Q+DG+     G T VL  V      +      +D   +   Y   T++
Sbjct: 20  RNINYKLGVY-TQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTVNCQYSMATFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      +   R     +  +R+++++     L       +  +   ++Q D      
Sbjct: 79  TNE-----RKERPRGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELLQADGSHLA- 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGSL 174
              + AA+ AL  +G+P  G V  A     ++G    +    E+   +
Sbjct: 133 -ACVNAATLALADAGVPMRGLVAAASCACALDGTPCADVSAREESNVM 179


>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
 gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
          Length = 257

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G 
Sbjct: 18  DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQ 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP AT   +R     G    R +   RL  R++  V+   A     + +
Sbjct: 74  GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 133

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     
Sbjct: 134 DCDVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGED---- 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+ 
Sbjct: 190 VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVA 249

Query: 534 EMS 536
              
Sbjct: 250 VQK 252



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 31  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 89

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 90  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 143

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 144 TRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 202

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 203 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
 gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
          Length = 238

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E +  S + +L+ +         ++    
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
 gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R +S + G+L+   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E +R     G  S R     RL  R++  V          + +  
Sbjct: 57  GWVTAEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D             +P+ + VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTAAITGAWVALHDCLNWMYQRSMLKTIPLKENVAAISCGI----HEGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +    S++ ++  L  A++G   ++   
Sbjct: 173 LDLDYAEDSKAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLSLLALARKGVGELVELQ 232

Query: 536 SKVLSE 541
            + +  
Sbjct: 233 KQAIKA 238



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E G + R ++G+ L  +G+T VL     +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSFERGVL-RHAEGSCLVKFGDTHVLVAATLEERLPPWLKGQGRGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  LE----RTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL            L  +P +  V         G  VL+    ED   +
Sbjct: 125 TRTAAITGAWVALHDCLNWMYQRSMLKTIPLKENVAAISCGIHEGTPVLDLDYAEDSKAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
              +  ++GT   ++ ++  A +   S+D +L  +         ++E   +  K 
Sbjct: 185 TDANFVMTGT-GGIVEIQGTAEKTPFSQDELLSLLALARKGVGELVELQKQAIKA 238


>gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01]
 gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01]
          Length = 238

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDD----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +    + +    ++    
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + ++  +         ++ A      
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALA 237


>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
 gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
 gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
 gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
          Length = 257

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G 
Sbjct: 18  DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQ 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP AT   +R     G    R +   RL  R++  V+   A     + +
Sbjct: 74  GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 133

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     
Sbjct: 134 DCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED---- 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+ 
Sbjct: 190 VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVA 249

Query: 534 EMS 536
              
Sbjct: 250 VQK 252



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 31  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 89

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 90  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 143

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 144 TRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 202

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 203 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
 gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
          Length = 261

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G PS R +   RL  R++  V+   A    T+ I  +
Sbjct: 59  WITSEYGMLPRATEVRNPREVTKGRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL D             +P+   VA +++G+V    +   L 
Sbjct: 119 VIQADGGTRTASITGSFIALADALNKLVEKGELQKIPLKSFVAAVSVGIV----EGNKLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+S  ED    +D  V  TD G I  +Q   + G  S       L  A  G   I+    
Sbjct: 175 DLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQK 234

Query: 537 KVLSESRLQL 546
           +VLS+   ++
Sbjct: 235 EVLSDIADKI 244



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 28/245 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +   Q       +T  Y     A 
Sbjct: 13  RPIKI-TRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            ++       + RP+   + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 72  -EVRNPREVTKGRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DL 176
            S+  +  AL            L  +P +  V    V  + G  +L+    ED  +L D+
Sbjct: 129 ASITGSFIALADALNKLVEKGELQKIPLKSFVAAVSVGIVEGNKLLDLSFQEDANALVDM 188

Query: 177 FVSGT-QDAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISK----LAKMCAKEP 229
            V  T +  ++ ++   E    S     + +    +  + +I+   +    +A     E 
Sbjct: 189 NVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQKEVLSDIADKIGVEN 248

Query: 230 IVIDS 234
           + +DS
Sbjct: 249 VEVDS 253


>gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 240

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 59  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDD----VL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQ 234

Query: 536 SKV 538
              
Sbjct: 235 KAA 237



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 84/232 (36%), Gaps = 28/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 14  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 72

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 73  ----HSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQADGG-- 126

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +    + +    ++    
Sbjct: 127 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVEDSAAD 186

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            D+ V  T++  + +E++     E    + ++      K  I  I    K  
Sbjct: 187 TDMNVVMTEEGKM-IEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAA 237


>gi|167945861|ref|ZP_02532935.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 205

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 7/194 (3%)

Query: 149 VVGAQVDYINGQYVLN--PRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIF 206
           V   +V Y +G+Y+LN           LDL V+GT++AVLMVE EAN+LSE+V+L A++F
Sbjct: 9   VGACRVGYKDGEYILNAASTGLSADSDLDLIVAGTEEAVLMVESEANELSEEVMLGAVLF 68

Query: 207 GHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK-LEEEMSQMIKEDLRVSCFIPEKYVRC 265
           GH + + VI+ I+ LA    K     +S    + L   +++  +  +  +  I +K  R 
Sbjct: 69  GHEQSQIVIDTINALAAEVGKAAGEFESPTVDEALTAAVAEAAEVGMGDAYSIADKLERY 128

Query: 266 KQIDDLKKKMVSYF----SSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSET 321
              D +K+  +         E   W+  E+    E ++ ++VR  +LD + R+DGRD+ T
Sbjct: 129 AAADAVKEATLEKLCSAAEGEEPRWSTDEVKGALEKLKKRIVRGRILDGEPRIDGRDTRT 188

Query: 322 VRDISAQVGLLQRT 335
           VR IS + G+L RT
Sbjct: 189 VRPISVRTGVLPRT 202


>gi|110636340|ref|YP_676548.1| ribonuclease PH [Mesorhizobium sp. BNC1]
 gi|122965408|sp|Q11B42|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1]
          Length = 238

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R IS + G+ +   GS L   GDT  +   +L    +E+    L  + +
Sbjct: 1   MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASL----EEKVPAWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G  +AL D                +   VA I+ G+     D   
Sbjct: 117 DVLQADGGTRTAAITGGFVALHDCLSWMQARQMVTVERVLKDHVAAISCGIY----DGTP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    +E      L+ A++G   ++  
Sbjct: 173 VLDLDYAEDSAAETDANFVMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKGIFRLVEL 232

Query: 535 MSKVLS 540
               +S
Sbjct: 233 QKMAVS 238



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 33/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +  E G +++ ++G+ L  +G+T VL T   +  +           +T  Y     + 
Sbjct: 12  RAISFERG-VSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNSGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     +RRE    +     + I R++ RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM--LSGLP----------FEGPVVGAQVDYINGQYVLNPRLDED--- 170
               ++     AL   LS +            +  V        +G  VL+    ED   
Sbjct: 125 TRTAAITGGFVALHDCLSWMQARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYAEDSAA 184

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +   +  ++G +  ++ ++  A     +E+   + +         ++E   
Sbjct: 185 ETDANFVMTG-KGGIVEIQGTAEGAPFTEEEFHELLRLARKGIFRLVELQK 234


>gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329]
          Length = 238

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIIAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +  + + +    ++    
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + ++  +         +I A      
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIIAAQKAALA 237


>gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 238

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDD----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 84/232 (36%), Gaps = 28/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +    + +    ++    
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            D+ V  T++  + +E++     E    + ++      K  I  I    K  
Sbjct: 185 TDMNVVMTEEGKM-IEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAA 235


>gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
 gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
          Length = 253

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R ++     ++   GS L   GDT+ I   TL    +E+    + G  +
Sbjct: 1   MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATL----EERVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G    R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++D             +P++  +A  ++G+V +      +
Sbjct: 117 DVIQADGGTRTASITGAFVAMVDAMQKLVDSGTWKQLPLNDFLAATSVGVVGEE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   +  AK G  ++++  
Sbjct: 173 LDLNYKEDSTAIVDMNVVMTGKGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQ 232

Query: 536 SKVLSE 541
            + L++
Sbjct: 233 KEALAD 238



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 22/231 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +    I + ++G+ L   G+T V+ T   +  +     G     +T  Y     A 
Sbjct: 12  RPVTITRNYI-KHAEGSCLIEVGDTKVICTATLEERVPPFMRGGGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDL-----E 123
                     + +     + I R+I R++R + +     E  +    +V+Q D       
Sbjct: 71  A-TRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDCDVIQADGGTRTAS 129

Query: 124 SSPHVVSMVAASAALMLSG----LPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
            +   V+MV A   L+ SG    LP    +    V  +  + VL+    ED      +++
Sbjct: 130 ITGAFVAMVDAMQKLVDSGTWKQLPLNDFLAATSVGVVGEEAVLDLNYKEDSTAIVDMNV 189

Query: 177 FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            ++G +   + ++        S + + + I         +I +  +     
Sbjct: 190 VMTG-KGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQKEALADV 239


>gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
 gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|33301645|sp|Q87T93|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
          Length = 238

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  R
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 28/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +  + + +    ++    
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            D+ V  T++  + +E++     E    + ++      K  I  I    K  
Sbjct: 185 TDMNVVMTEEGKM-IEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAA 235


>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 240

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 13/237 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E +   D
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEAKGRRD 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 64  ------RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 118 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DSTALADLSHVEE 173

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 174 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHVVRQH 230



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 10/214 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++   G  A Q+DG+     G T  LA V      K  +D   +   Y   T++ G+ 
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEAKGRRDRALVNCQYSSATFSTGE- 80

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
                +R          +   + ++            +Q+ I V     +   +   + A
Sbjct: 81  ----RKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 136

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVEL 190
           A+ A++ +G+P    V      +++   + +    E+      L L +      + ++E+
Sbjct: 137 ATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQLALALLPASGQIALLEM 196

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +A  L ED +   +       + V   +  + + 
Sbjct: 197 DAR-LHEDHLEQVLEAAAQAARDVHTLLDHVVRQ 229


>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 245

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 13/243 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D  +R+DGR    +R I  +VG+L+R  GS+    G  + I  V  G  E   Y  
Sbjct: 8   KLIDDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAV-YGPHEA--YPK 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +    R      Y+  P +  E  R G P RR I   ++   A+  V+        ++ 
Sbjct: 65  HVQEADRAIVRARYSMAPFSVDERKRPG-PDRRAIELSKVISEALESVIFVEKYPRTSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAG+P+   + G A G + D    +++ D++ +ED
Sbjct: 124 VYIEVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDD----VVVLDLNKEED 179

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  +A       I  +QMD   G +S   +  A+  A      I     + L   
Sbjct: 180 NFGQADVPMAIMPRTKEIALLQMD---GDMSYEELTTAMDMAMDAAEKIHEMQVEALKRK 236

Query: 543 RLQ 545
            ++
Sbjct: 237 YIE 239



 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 19/230 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + +++DG+    +G   ++A V              D   +   Y    ++
Sbjct: 26  RPIKMEVGVL-KRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I +S++I  ++  +    K  +    V I V+Q D      
Sbjct: 85  VDE------RKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  +  AS AL  +G+P    +VG     I+   VL+   +ED   Q  + + +      
Sbjct: 137 VAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKE 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           + +++++ + +S + +  A+    +  + + E   +  K    E +  + 
Sbjct: 197 IALLQMDGD-MSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIEEVDENE 245


>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
          Length = 271

 Score =  168 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 8/231 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 31  ELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 88

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 89  SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 148

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 149 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 204

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     +A       I  ++MD ++       ++ A  QA RG   +L+
Sbjct: 205 AAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLD 255



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 71/203 (34%), Gaps = 7/203 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++       P       + Y+   
Sbjct: 49  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQ-YSSAT 106

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 107 FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 166

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A+M +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 167 AATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 226

Query: 190 LEANQLSEDVVLDAIIFGHNECK 212
           +++  L ED +   +       +
Sbjct: 227 MDSR-LHEDHLEQVLEAAAQAAR 248


>gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA-processing protein 41) (Exosome component 4) (p12A)
           [Equus caballus]
          Length = 245

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  +A R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTLLDRVVRQH 235



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A+M +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 AATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +    E
Sbjct: 201 MDAR-LHEDHLEQVLEAAARAARDVHTLLDRVVRQHVHE 238


>gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01]
 gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01]
          Length = 238

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWITAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 28/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +  + + +    ++    
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            D+ V  T++  + +E++     E    + ++      K  I  I    K  
Sbjct: 185 TDMNVVMTEEGKM-IEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAA 235


>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
 gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
          Length = 249

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 108/244 (44%), Gaps = 8/244 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S     R      Y+    +TGE  R     R+        ++     +         + 
Sbjct: 63  SKMLHDRCVINCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I ++DG +    V  ++LA++DAG+P+   V   + G ++D      L+D+S  E+
Sbjct: 123 IYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCACSAGFIEDTP----LADLSYVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G     +A       I  ++M+ ++       ++ A+ +A +    +L+++ +  ++ 
Sbjct: 179 ATGGPQLALALLPKSDQIALLEMNSRLHEDHLERVMEAVSKACKDVYTVLDQVVREHAQE 238

Query: 543 RLQL 546
              L
Sbjct: 239 VTTL 242



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 85/225 (37%), Gaps = 19/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTY 68
           R ++   G  A Q+DG+     G T  LA V     ++        D   +   Y   T+
Sbjct: 23  RKIRARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVINCQYSMATF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           + G+      +R          ++  + ++           +++  + + ++Q D  +  
Sbjct: 82  STGE-----RKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADGGNY- 135

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
               + AA+ A++ +G+P    V      +I    + +    E+      L L +    D
Sbjct: 136 -CTCVNAATLAVIDAGIPMRDYVCACSAGFIEDTPLADLSYVEEATGGPQLALALLPKSD 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + ++E+ +  L ED +   +      CK V   + ++ +  A+E
Sbjct: 195 QIALLEMNSR-LHEDHLERVMEAVSKACKDVYTVLDQVVREHAQE 238


>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 243

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 13/243 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D  +R+DGR    +R I  +VG+L+R  GS+    G  + I  V  G  E   Y  
Sbjct: 6   KLIDDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAV-YGPHEA--YPK 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +    R      Y+  P +  E  R G P RR I   ++   A+  V+        ++ 
Sbjct: 63  HVQEADRAIVRARYSMAPFSVDERKRPG-PDRRAIELSKVISEALESVIFVEKYPRTSID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +SLAL DAG+P+   + G A G + D    +++ D++ +ED
Sbjct: 122 VYIEVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDD----VVVLDLNKEED 177

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G  D  +A       I  +QMD   G +S   +  A+  A      I     + L   
Sbjct: 178 NFGQADVPMAIMPRTKEIALLQMD---GDMSYEELTTAMDMAMDAAEKIHEMQVEALKRK 234

Query: 543 RLQ 545
            ++
Sbjct: 235 YIE 237



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 19/230 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + +++DG+    +G   ++A V              D   +   Y    ++
Sbjct: 24  RPIKMEVGVL-KRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I +S++I  ++  +    K  +    V I V+Q D      
Sbjct: 83  VDE------RKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAG--TR 134

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  +  AS AL  +G+P    +VG     I+   VL+   +ED   Q  + + +      
Sbjct: 135 VAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKE 194

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           + +++++ + +S + +  A+    +  + + E   +  K    E +  + 
Sbjct: 195 IALLQMDGD-MSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIEEVDENE 243


>gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
 gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
          Length = 248

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R I       +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASI----EDRVPPFLKGKGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN LP AT          G    R +   R+  RA+  V+   A    T+ +  
Sbjct: 57  GWITCEYNMLPRATQVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   V+ I++G+V +    + +
Sbjct: 117 DVIQADGGTRTASISGAFVALVDAVNKLHKRTPFTVYPIRDFVSAISVGIVNN----VRM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  TDSG    +Q   +    + + +   L+  ++G  ++++  
Sbjct: 173 LDLCYLEDSRAQVDMNIVMTDSGEFVEIQGTGEQSPFTRDDLQELLRLGEKGINNMIHAQ 232

Query: 536 SK 537
            +
Sbjct: 233 KE 234



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T V+ T   +  +     G+    +T  Y     A 
Sbjct: 12  RPIKI-TRDYTKYAEGSVLIETGDTKVICTASIEDRVPPFLKGKGEGWITCEYNMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                  + +  +     + I R+I R++R +       E    V  +V+Q D       
Sbjct: 71  QVRKIRDITK-GKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL   ++ L         P    V    V  +N   +L+    ED   Q  +
Sbjct: 128 ASISGAFVALVDAVNKLHKRTPFTVYPIRDFVSAISVGIVNNVRMLDLCYLEDSRAQVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++ + + V  ++    Q   + D + + +  G      +I A  +  KM
Sbjct: 188 NIVMTDSGEFV-EIQGTGEQSPFTRDDLQELLRLGEKGINNMIHAQKESLKM 238


>gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B]
 gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B]
          Length = 240

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 59  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDE----VL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQ 234

Query: 536 SKV 538
              
Sbjct: 235 KAA 237



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 14  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 72

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 73  ----HSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQADGG-- 126

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +  + + +    ++    
Sbjct: 127 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVEDSAAD 186

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + ++  +         ++ A      
Sbjct: 187 TDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALA 239


>gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 238

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ D     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +  + + +    ++    
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + ++  +         ++ A      
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALA 237


>gi|147677126|ref|YP_001211341.1| ribonuclease PH [Pelotomaculum thermopropionicum SI]
 gi|146273223|dbj|BAF58972.1| RNase PH [Pelotomaculum thermopropionicum SI]
          Length = 257

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +      ++   GS L   GDT+ I   T+    +++    L G  + 
Sbjct: 3   RIDGRKPDQLRPVRITRNYIKHAEGSVLIEIGDTRVICTATV----EDKVPLFLKGEGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG  +      G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WITAEYGMLPRSTGVRTPREAARGKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA            +P+S  VA  ++G +    +  I  
Sbjct: 119 VIQADGGTRTASITGAFVALVDALNRLKEQGQIDRIPVSDFVAATSVGRL----NGRIYL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  T SG    +Q   +    +   M   ++ A +G   ++    
Sbjct: 175 DLCYEEDSAAEVDMNIVMTGSGRFVEVQGTGEEASFTRQEMDSMIELAAQGISRLILHQK 234

Query: 537 K 537
           +
Sbjct: 235 E 235



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 28/229 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++    I + ++G+VL   G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 13  RPVRITRNYI-KHAEGSVLIEIGDTRVICTATVEDKVPLFLKGEGKGWITAEYGMLPRST 71

Query: 71  G-KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
           G + P    R   +       I R+I RS+R +       E    +  +V+Q D      
Sbjct: 72  GVRTPREAAR--GKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDCDVIQADGG--TR 127

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            +  +P    V    V  +NG+  L+   +ED   +  
Sbjct: 128 TASITGAFVALVDALNRLKEQGQIDRIPVSDFVAATSVGRLNGRIYLDLCYEEDSAAEVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK 220
           +++ ++G+    + V+    +   +   +   I         +I    +
Sbjct: 188 MNIVMTGS-GRFVEVQGTGEEASFTRQEMDSMIELAAQGISRLILHQKE 235


>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
 gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
          Length = 257

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G 
Sbjct: 18  DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQ 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP AT   +R     G    R +   RL  R++  V+   A     + +
Sbjct: 74  GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 133

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     
Sbjct: 134 DCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED---- 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+ 
Sbjct: 190 VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVA 249

Query: 534 EMS 536
              
Sbjct: 250 VQK 252



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 31  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 89

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 90  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 143

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 144 TRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 202

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 203 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
 gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
          Length = 245

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 103/237 (43%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R + A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEVRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +T E  R     R+        ++     +         + 
Sbjct: 63  SKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I +SDG +  A V  ++LA++DAG+P+   V     G V +      L+D+   E+
Sbjct: 123 IYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETP----LADLCHAEE 178

Query: 485 HLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A    G  I  +QMD ++       ++ A   A +G   +L+E+ +  
Sbjct: 179 SGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQH 235



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTY 68
           R ++   G  A Q+DG+     G T  LA V     ++        D   +   Y   T+
Sbjct: 23  RKVQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVINCQYSMATF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV--MQHDLESSP 126
           +  +      +R          +S  + ++            +Q+ I V  +Q D  +  
Sbjct: 82  STAE-----RKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYS 136

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
               + AA+ A++ +G+P    V      +++   + +    E+ G   SL L +     
Sbjct: 137 --ACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGG 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            + +++++A  L +D +   +      CK V + + ++ + 
Sbjct: 195 HIALLQMDAR-LHQDHLETLMEAAMTACKGVSKVLDEVVRQ 234


>gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 4 [Canis familiaris]
          Length = 244

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E  + V 
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHE-ARGVR 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L+  ++      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  TLT-QRKALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V +      L+D+S  E+
Sbjct: 122 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNT----ALADLSHVEE 177

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  +A R    +L+ + +  
Sbjct: 178 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQH 234



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 14/222 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD----GQDFFPLTVNYQERTYA 69
           R ++   G  A Q+DG+     G T  LA V      +      Q    +   Y   T++
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEARGVRTLTQRKALVNCQYSSATFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G+      +R          +   + ++            +Q+ I V     +   +  
Sbjct: 82  TGE-----RKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAA 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVL 186
            + AA+ A++ +G+P    V      +++   + +    E+      L L +      + 
Sbjct: 137 CVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGPQLALALLPASGQIA 196

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++E++A  L ED +   +       + V   + ++ +   +E
Sbjct: 197 LLEMDAR-LHEDHLEQVLEAAARAARDVHTVLDRVVRQHVRE 237


>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
 gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
          Length = 245

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++LD   R+DGR  + +R +  ++G+L+   GSSL   G+T+ I  V  G RE   +  
Sbjct: 8   KLILDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAV-YGPREM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+   R    + Y+  P +T E      PSRREI   ++ R A+   +        ++ 
Sbjct: 65  HLALPNRATLRVRYHMTPFSTDERKS-PVPSRREIELSKVIREALESSVLVEQFPRSSID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A++  +SLA++DAG+P+   +A +A+G      D +++ D++  ED
Sbjct: 124 VFMEVIQADAGTRLASLMAASLAIIDAGIPVRDAIAAVAVGKA----DGVVVLDLNEPED 179

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G  D  VA   S   IT +Q++   G ++       L  A +G   I +   +VL   
Sbjct: 180 MWGEADMPVAMMPSLGQITLIQLN---GHMTPEEFKQGLDLAYKGINTIYSMEKEVLKSK 236

Query: 543 RLQLGE 548
             ++ E
Sbjct: 237 FAEMRE 242



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 23/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ L   G T ++A V   R +       P    L V Y    ++
Sbjct: 26  RPMKMEIGVL-KNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L  +  ++   V + V+Q D      
Sbjct: 85  TDE------RKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           + S++AAS A++ +G+P    +    V   +G  VL+    ED   +  + + +  +   
Sbjct: 137 LASLMAASLAIIDAGIPVRDAIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMMPSLGQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           + +++L  +   E+        G +     I  I  + K   K    
Sbjct: 197 ITLIQLNGHMTPEE-----FKQGLDLAYKGINTIYSMEKEVLKSKFA 238


>gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus sp. MC-1]
 gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus sp. MC-1]
          Length = 243

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 89/247 (36%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++  +R+ GR  + +R ++      +   GS L   GDTQ +   T+    +E     + 
Sbjct: 1   MNSSLRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTATV----EESQPRWMR 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              R      Y  LP +T          G  S R +   RL  RA+  V+   A    T+
Sbjct: 57  NEDRGWVTAEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A++ G+ +A+ D              P+   VA ++ G+V     
Sbjct: 117 WLDCDVIQADGGTRTASITGAFVAMHDAVTGLLKAGLIRHNPLRDHVAAVSCGMV----A 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            +   D+   ED     D     T   G   +Q   +    +          A +G   +
Sbjct: 173 GMPALDLDYQEDSRCDTDMNFVMTGAGGFVEIQGTAEGVPFTRPEFESMAALADQGIKAL 232

Query: 532 LNEMSKV 538
           +      
Sbjct: 233 VQAQKLA 239



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 34/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + + T    + ++G+ L  +G+T VL T   + S       +D   +T  Y     + 
Sbjct: 16  RAVTI-TRHYTKHAEGSCLIAFGDTQVLCTATVEESQPRWMRNEDRGWVTAEYGMLPRST 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--------INVMQHDL 122
             +  G    + + +   + I R+I R++R +       + Q +         +V+Q D 
Sbjct: 75  N-VRMGREAAKGKQSGRTLEIQRLIGRAMRAVV------DLQALGKRTIWLDCDVIQADG 127

Query: 123 -----ESSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                  +   V+M  A   L+ +GL    P    V       + G   L+    ED   
Sbjct: 128 GTRTASITGAFVAMHDAVTGLLKAGLIRHNPLRDHVAAVSCGMVAGMPALDLDYQEDSRC 187

Query: 171 QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
              ++  ++G     + ++  A  +  +               K +++A  
Sbjct: 188 DTDMNFVMTG-AGGFVEIQGTAEGVPFTRPEFESMAALADQGIKALVQAQK 237


>gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
          Length = 261

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G PS R +   RL  R++  V+        T+ I  +
Sbjct: 59  WITSEYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL DA            +P+   VA +++G+V+  +    L 
Sbjct: 119 VIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIVEGNE----LL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+S  ED    +D  V  TD G I  +Q   + G  ++  +   L  A+ G   I+    
Sbjct: 175 DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQK 234

Query: 537 KVLSESRLQL 546
           +VLS+   ++
Sbjct: 235 EVLSDIVDKI 244



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G T V+ T   +  +   Q       +T  Y     A 
Sbjct: 13  RPIKI-TRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + RP+   + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 72  -ETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DL 176
            S+  +  AL            +  +P +G V    V  + G  +L+    ED  +L D+
Sbjct: 129 ASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIVEGNELLDLSFQEDSNALVDM 188

Query: 177 FVSGT-QDAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  T +  ++ ++   E    ++  + D +       + +I+   ++
Sbjct: 189 NVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEV 236


>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
 gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
          Length = 257

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G 
Sbjct: 18  DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQ 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP AT   +R     G    R +   RL  R++  V+   A     + +
Sbjct: 74  GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 133

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++       
Sbjct: 134 DCDVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGILGGD---- 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+ 
Sbjct: 190 VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVA 249

Query: 534 EMS 536
              
Sbjct: 250 VQK 252



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 83/229 (36%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 31  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 89

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 90  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 143

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS AL            L   P +G V    V  + G  + +    ++    
Sbjct: 144 TRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYVEDSAAD 203

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 204 TDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
          Length = 242

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 13/239 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+ GR  E +R I  +VGLL+R  GS  F  G+ +A+  V  G RE   +    
Sbjct: 8   LIKDGKRLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAV-YGPREM--HPRHF 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +R      YN  P +  +  R G P RR      ++R+A+ PV+ +       + + 
Sbjct: 65  QNAKRAVVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ +A+G +    D  ++ D+   ED+ 
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI----DGEVVLDLDAKEDNF 179

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           G  D  +A     + IT +QMD   G + +      L+ A  G   I       L E  
Sbjct: 180 GEADVPIAMIARTNTITLLQMD---GRLKKEEFERGLKLAMNGCRKIYELQKAALVEKY 235



 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 17/221 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + +++DG+     G    LA V   R +            +   Y    ++
Sbjct: 24  RPIKIEVG-LLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVKYRYNMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           V        R+   P      IS +  +++ P+  +    +T + + V     ++     
Sbjct: 83  VDD------RKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTA 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            + AAS AL  +G+P    V    +  I+G+ VL+    ED   +  + + +    + + 
Sbjct: 137 GINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADVPIAMIARTNTIT 196

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +++++   L ++     +    N C+ + E     A +  K
Sbjct: 197 LLQMDGR-LKKEEFERGLKLAMNGCRKIYELQK--AALVEK 234


>gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
 gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
          Length = 256

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 23/250 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+ + +R I  +   L+   GS L   GDT+ I   ++    DE+    + G  +
Sbjct: 1   MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASI----DERVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +      G  S R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL---MDA--------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+   MD           PI+  +A  ++G++K+    +  
Sbjct: 117 DVIQADGGTRTASITGAFVAMSQAMDKLYSSKKLAHYPINDFLAATSVGILKNKQAAV-- 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T SG    +Q   +    S   +   L  A+ G   +    
Sbjct: 175 -DLNYIEDSSAEVDMNVVMTGSGEFVELQGTGEEATFSYTQLQEMLGAAQEGISELFEFQ 233

Query: 536 SKVLSESRLQ 545
              L E   +
Sbjct: 234 KAALGEKITE 243



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 33/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +E+  + +  +G+VL T G+T V+ T   D  +     GQ    +T  Y     A 
Sbjct: 12  RPIHIESDYL-KHPEGSVLITVGDTKVICTASIDERVPPFMRGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + +   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  A+            L+  P    +    V    N Q  ++    ED      
Sbjct: 128 ASITGAFVAMSQAMDKLYSSKKLAHYPINDFLAATSVGILKNKQAAVDLNYIEDSSAEVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS-----EDVVLDAIIFGHNECKPVIEAIS 219
           +++ ++G+ + V  ++    + +        +L A          + E   
Sbjct: 188 MNVVMTGSGEFV-ELQGTGEEATFSYTQLQEMLGA---AQEGISELFEFQK 234


>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
 gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
          Length = 238

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|27375785|ref|NP_767314.1| ribonuclease PH [Bradyrhizobium japonicum USDA 110]
 gi|61216053|sp|Q89WK4|RNPH_BRAJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|27348923|dbj|BAC45939.1| Ribonuclease PH [Bradyrhizobium japonicum USDA 110]
          Length = 237

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 102/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+++   GS L   GDT  +V  TL    +++    L G  R
Sbjct: 1   MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATL----EDRLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  S R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRATSERTRREASAGKQSGRTVEIQRLIGRSLRTIINLEALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPIS-----------KPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D    +              VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAWVALADCVNWMKARNMVKANVLRDNVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    +++ ++  +  A++G   +++  
Sbjct: 173 LDLDYAEDSEAQTDANFVMTGDGRIIEVQGTAEREPFTQDELLALMALAQKGIARLVDLQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KLAVA 237



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RPVTLERGVV-KYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    + +   + I R+I RS+R + +     E Q+    +V+Q D    
Sbjct: 71  SE----RTRREASAGKQSGRTVEIQRLIGRSLRTIINLEALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +        V        NG  VL+    ED   Q
Sbjct: 125 TRTASITGAWVALADCVNWMKARNMVKANVLRDNVAAISCGIYNGTPVLDLDYAEDSEAQ 184

Query: 172 GSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G    ++ V+  A     ++D +L  +         +++       
Sbjct: 185 TDANFVMTG-DGRIIEVQGTAEREPFTQDELLALMALAQKGIARLVDLQKLAVA 237


>gi|170742381|ref|YP_001771036.1| ribonuclease PH [Methylobacterium sp. 4-46]
 gi|226736918|sp|B0UP55|RNPH_METS4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|168196655|gb|ACA18602.1| ribonuclease PH [Methylobacterium sp. 4-46]
          Length = 237

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+ +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAPDELRKVTLEKGVARYAEGSCLVTFGETKVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERNRREVTAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL +              P+   VA I+ G+       I +
Sbjct: 117 DVLQADGGTRTASITGAWVALHECFTWMRGRSIISVDPMRDHVAAISCGI----HKGIPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D     T S GI  +Q   +I   SE   +  L+ AK G   ++   
Sbjct: 173 LDLDYDEDSAADTDANFVITGSGGIVEVQGTAEIAPFSEEQFLGLLRLAKAGVAQLVALQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 32/233 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G +AR ++G+ L T+GET VL T   +        G     +T  Y     A 
Sbjct: 12  RKVTLEKG-VARYAEGSCLVTFGETKVLCTASLEERGPPWLRGSGKGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R + +     E Q++   +V+Q D    
Sbjct: 71  HER----NRREVTAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+  A  AL            +S  P    V         G  +L+   DED    
Sbjct: 125 TRTASITGAWVALHECFTWMRGRSIISVDPMRDHVAAISCGIHKGIPILDLDYDEDSAAD 184

Query: 173 -SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA 222
              +  ++G+   ++ V+  A     SE+  L  +         ++    +  
Sbjct: 185 TDANFVITGS-GGIVEVQGTAEIAPFSEEQFLGLLRLAKAGVAQLVALQKQAV 236


>gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016]
 gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
 gi|33301654|sp|Q8DDX4|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216003|sp|Q7MPT3|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016]
 gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS A+         SG     P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             D+ V  T++  ++ ++   E    S + +L  +         ++ A      
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQKAALA 237


>gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
 gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
          Length = 261

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G PS R +   RL  R++  V+        T+ I  +
Sbjct: 59  WITSEYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL DA            +P+   VA +++G+V+  +    L 
Sbjct: 119 VIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIVEGNE----LL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+S  ED    +D  V  TD G I  +Q   + G  ++  +   L  A+ G   I+    
Sbjct: 175 DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQK 234

Query: 537 KVLSESRLQL 546
           +VLS+   ++
Sbjct: 235 EVLSDIVDKI 244



 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G T V+ T   +  +   Q       +T  Y     A 
Sbjct: 13  RPIKI-TRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + RP+   + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 72  -ETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DL 176
            S+  +  AL            +  +P +G V    V  + G  +L+    ED  +L D+
Sbjct: 129 ASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIVEGNELLDLSFQEDSNALVDM 188

Query: 177 FVSGT-QDAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  T +  ++ ++   E    ++  + D +       + +I+   ++
Sbjct: 189 NVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEV 236


>gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1]
 gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1]
          Length = 237

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   RD++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G QR
Sbjct: 1   MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQQR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  R     G  S R     RL  R++  V+   A   Y + +  
Sbjct: 57  GWVTAEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVP-ISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D             P +   VA I+ G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAWVALRDCIEWMRARDMVTKPVLKDHVAAISCGIYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +    +E+     L  AK+G   +++  
Sbjct: 173 LDLDYVEDSAAETDANFVLTGTGGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDLQ 232

Query: 536 SK 537
             
Sbjct: 233 KM 234



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G +++ ++G+ L  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RAVTLERG-VSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     +RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL           M++    +  V         G  VL+    ED   +
Sbjct: 125 TRTASITGAWVALRDCIEWMRARDMVTKPVLKDHVAAISCGIYKGTPVLDLDYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++GT   ++ ++  A     +ED     +         +++   
Sbjct: 185 TDANFVLTGT-GGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDLQK 233


>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
 gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
          Length = 257

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G 
Sbjct: 18  DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQ 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP AT   +R     G    R +   RL  R++  V+   A     + +
Sbjct: 74  GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 133

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++       
Sbjct: 134 DCDVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGILGGD---- 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+   ED     D  V  T+ G +  +Q   +        ++  L  AK+G   I+ 
Sbjct: 190 VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKKGIADIVA 249

Query: 534 EMS 536
              
Sbjct: 250 VQK 252



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 31  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 89

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 90  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 143

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS AL            L   P +G V    V  + G  + +    ++    
Sbjct: 144 TRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYVEDSAAD 203

Query: 174 LDLFVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAIS 219
            D+ V  T++  + +E++     E    + +L+ +         ++    
Sbjct: 204 TDMNVVMTEEGKM-IEIQGTAEGEPFCHEQLLELLAVAKKGIADIVAVQK 252


>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
 gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
          Length = 238

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
 gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
          Length = 245

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 8/246 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R + A++ +  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S S   R      Y+    +T E  R     R+        ++     +         + 
Sbjct: 63  SKSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I ++DG +  A V  ++LAL+DAG+P+   V   + G V+D      L+D+   E+
Sbjct: 123 IYVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTP----LADLCHAEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G     +A       I  +QMD ++     + ++ A   A +    +L+ + +   E 
Sbjct: 179 SGGGTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVVRQHLEE 238

Query: 543 RLQLGE 548
              L  
Sbjct: 239 VSDLTR 244



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 79/213 (37%), Gaps = 18/213 (8%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTYAVGKIPGGYLRR 80
           Q+DG+     G T  LA V     ++        D   +   Y   T++  +      +R
Sbjct: 34  QADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAIINCQYSMATFSTAE-----RKR 88

Query: 81  ESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                     +S  + ++           +++  + + ++Q D  +      + AA+ AL
Sbjct: 89  RPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADGGNYS--ACVNAATLAL 146

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQL 195
           + +G+P    V      ++    + +    E+ G   +L L +      + +++++A  L
Sbjct: 147 VDAGIPMRDYVCACSAGFVEDTPLADLCHAEESGGGTALALALLPRSGNIALLQMDAR-L 205

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            +D +   +      CK   + +  + +   +E
Sbjct: 206 HQDHLDTLMEAAMTACKEFSKVLDSVVRQHLEE 238


>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
 gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
          Length = 333

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             + +  +R+DGR ++ +R +   +G+L R  GS     G+ + I  V  G R  E +  
Sbjct: 7   KFIDENGLRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAV-YGPR--ELHPR 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +           YN    +  +  R G PSRR     +++  A  PV+         + 
Sbjct: 64  RMQRPDAAVIRYKYNMASFSVEDRQRPG-PSRRSSEISKVSSEAFEPVVMTQFYPNTVID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + SE+ E+D  +  A +  ++LAL+DAG+P+   V+  A+G V    D  ++ D++  ED
Sbjct: 123 VFSEVLEADAGTRTAAINAATLALIDAGIPLKSLVSACAVGKV----DGQLVLDLNKKED 178

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G  D  VA T  G IT +QMD   G ++E+ +  A++  K G   I     + 
Sbjct: 179 NEGEADLPVAITQDGEITLLQMD---GHLTEDEIKQAMELVKNGCQQIQQIQREA 230



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 17/221 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K++ G ++R +DG+    +G   +++ V   R L   +   P    +   Y   +++
Sbjct: 25  RPMKVDIGVLSR-ADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVIRYKYNMASFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL-FSKCYKNET-QVIINVMQHDLESSPH 127
           V        R+   P+     IS++   +  P+  ++ Y N    V   V++ D      
Sbjct: 84  VED------RQRPGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVLEADAG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
             ++ AA+ AL+ +G+P +  V    V  ++GQ VL+    ED +G  DL V+ TQD  +
Sbjct: 136 TAAINAATLALIDAGIPLKSLVSACAVGKVDGQLVLDLNKKEDNEGEADLPVAITQDGEI 195

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCA 226
            +      L+ED +  A+    N C+ + +   + L K   
Sbjct: 196 TLLQMDGHLTEDEIKQAMELVKNGCQQIQQIQREALLKKFG 236


>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|21759419|sp|Q9KVD6|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3894-4]
          Length = 238

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|91974875|ref|YP_567534.1| ribonuclease PH [Rhodopseudomonas palustris BisB5]
 gi|123735818|sp|Q13E56|RNPH_RHOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91681331|gb|ABE37633.1| RNAse PH [Rhodopseudomonas palustris BisB5]
          Length = 237

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  + R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D            G  +   VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAWVALADCLGWMKTRNMIKGTVLRDNVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    S++  +  +  A++G   +++  
Sbjct: 173 LDLDYAEDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVTRLVDLQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KMAVA 237



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  LE----RTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            + G      V        NG  VL+    ED   +
Sbjct: 125 TRTASITGAWVALADCLGWMKTRNMIKGTVLRDNVAAISCGIYNGTPVLDLDYAEDSEAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G    ++ V+  A +   S+D  L  +         +++       
Sbjct: 185 TDANFVMTG-DGRIIEVQGTAEKTPFSQDEFLALMALAQKGVTRLVDLQKMAVA 237


>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
 gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
          Length = 238

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEN----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +      +E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL-GENVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
          Length = 239

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++     G    R +   RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+D            G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  TD  G   +Q   +      + +   L+ A++G   +     
Sbjct: 175 DLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQR 234

Query: 537 KVLSE 541
             L+E
Sbjct: 235 AALAE 239



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RPIRI-TRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A+ AL            L G P +  V    V    G  VL+    ED   +  L
Sbjct: 129 ASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++      + V+  A       D +   +       + + E        
Sbjct: 189 NVVMT-DAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQRAALAE 239


>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
 gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
          Length = 238

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +      +E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG5E24]
          Length = 245

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 13/240 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR     R ++ +VG+L+   GS+    G  + +  V  G R+   +   
Sbjct: 10  LLDENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGV-FGPRDV--HPKH 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +S        + Y+  P +  E     APSRREI   ++ + A+ P +         + +
Sbjct: 67  MSNPDTGILRVRYHMEPFSVSERKN-PAPSRREIEISKVLKEALEPAVILEKFPRTAIDV 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +  A +  +S+AL DAG+P+   V   A G   D     ++ D++ +ED 
Sbjct: 126 YLEVLQADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKAADT----LILDVNNEEDQ 181

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  +    +   IT +Q+D     ++ +     ++    G   +       L E  
Sbjct: 182 AGQADMPIGYMPNFGKITLLQLDGV---LTTDEFKKCIELGIEGCKQVYEIQKNALREKY 238



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 23/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R + ++ G + + +DG+    +G   +LA V   R +       P    L V Y    ++
Sbjct: 27  RKVTIKVGVL-KNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D      
Sbjct: 86  VSE------RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQADGG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
             ++ AAS AL  +G+P    V            +L+   +ED   Q  + +        
Sbjct: 138 CAALDAASVALADAGIPMRDMVCSCAAGKAADTLILDVNNEEDQAGQADMPIGYMPNFGK 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           + +++L+   L+ D     I  G   CK V     ++ K   +E   
Sbjct: 198 ITLLQLDG-VLTTDEFKKCIELGIEGCKQVY----EIQKNALREKYF 239


>gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46]
 gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46]
          Length = 253

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R DGR  + +R ++   G      GS L   G+T+ +   ++    ++        +
Sbjct: 7   DFRRADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASV----EQSVPRFKRDS 62

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP +T E        G    R     RL  R++   +        T+ I
Sbjct: 63  GEGWLTAEYSMLPASTHERMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINI 122

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G++    D  
Sbjct: 123 DCDVLQADGGTRTASITGAYVALADALTYLHAVGAVPGTPLKAPVAAVSVGII----DGR 178

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +ED    +D  V  T  G    +Q   + G    + +   L  A++G   ++ 
Sbjct: 179 VCLDLPYEEDSRAEVDLNVVMTAEGKFVEIQGTGEEGTFDRDQLNDMLDSAEKGLRELIA 238

Query: 534 EMSKVLSESRL 544
              +VL     
Sbjct: 239 LQQEVLRAPYP 249



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 27/215 (12%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL T+G T V+ T  V     +  +D     LT  Y     +   ++P   +R   + 
Sbjct: 34  GSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGWLTAEYSMLPASTHERMPRESMR--GKV 91

Query: 85  TENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR+I RS+R      +  +N   +  +V+Q D        S+  A  AL  + 
Sbjct: 92  KGRTHEISRLIGRSLRAAIDLKELGENTINIDCDVLQADGG--TRTASITGAYVALADAL 149

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                     G P + PV    V  I+G+  L+   +ED   +  L++ ++  +   + +
Sbjct: 150 TYLHAVGAVPGTPLKAPVAAVSVGIIDGRVCLDLPYEEDSRAEVDLNVVMTA-EGKFVEI 208

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +    + +   D + D +       + +I    ++
Sbjct: 209 QGTGEEGTFDRDQLNDMLDSAEKGLRELIALQQEV 243


>gi|154246476|ref|YP_001417434.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
 gi|226736952|sp|A7IID4|RNPH_XANP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154160561|gb|ABS67777.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
          Length = 237

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R +S + G+++   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSKRAADEMRAVSFERGVMRHAEGSCLVKFGDTHVLVSATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +R     G  S R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYSMLPRATHDRTRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D             +P+   VA ++ G+     +   +
Sbjct: 117 DVLQADGGTRTAAITGAWIALYDCLSWMRQRSMVKEIPLKDHVAAVSCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED +   D     T   GI  +Q   +    S++ ++  L  A+ G   ++   
Sbjct: 173 LDLDYAEDSVAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLGLLSLARSGVEKLVGLQ 232

Query: 536 SKV 538
              
Sbjct: 233 KLA 235



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E G + R ++G+ L  +G+T VL +   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSFERGVM-RHAEGSCLVKFGDTHVLVSATLEERLPPWLKGQGRGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  HDR----TRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL            +  +P +  V        NG  VL+    ED   +
Sbjct: 125 TRTAAITGAWIALYDCLSWMRQRSMVKEIPLKDHVAAVSCGIYNGTPVLDLDYAEDSVAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++GT   ++ ++  A +   S+D +L  +    +  + ++    
Sbjct: 185 TDANFVMTGT-GGIVEIQGTAEKTPFSQDELLGLLSLARSGVEKLVGLQK 233


>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
 gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
          Length = 257

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G 
Sbjct: 18  DPMRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQ 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP AT   +R     G    R +   RL  R++  V+   A     + +
Sbjct: 74  GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 133

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     
Sbjct: 134 DCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED---- 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+ 
Sbjct: 190 VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVA 249

Query: 534 EMS 536
              
Sbjct: 250 VQK 252



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 31  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 89

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 90  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 143

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 144 TRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 202

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 203 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
 gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
          Length = 247

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 7/234 (2%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R DGR    +R+++ ++G+  +  GS+   +G+T+ +  V  G  E +Q   
Sbjct: 2   NIISEHGYRQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAV-YGPYEPKQRSR 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R      Y+    +T E        RR +   RL  +A    +         + 
Sbjct: 61  LL--EDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAVLTENYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++DGS   A V   +LAL DAGVP+   VA  +     +G   +   D++  E+
Sbjct: 119 VFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPNG---VACVDVNSREE 175

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                   VA T SG  A+ +      + +N +++ L+ A+R   H+ + +   
Sbjct: 176 MGIIPRLTVA-TISGQDAVVLAELQNRLHKNYLIVILEAARRATAHVHSCLEAA 228



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 6/141 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L  + G  + Q+DG+     G T VL  V      K              + Y++   
Sbjct: 20  RNLNYKLGVYS-QADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIINCQ-YSMATF 77

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSM 131
                +   R     +  +R+++++           +++  V   ++Q D         +
Sbjct: 78  STNERKERPRGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELLQADGSHLA--ACV 135

Query: 132 VAASAALMLSGLPFEGPVVGA 152
              + AL  +G+P  G V  A
Sbjct: 136 NVGTLALADAGVPMRGLVAAA 156


>gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
 gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus]
          Length = 245

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  +A R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQH 235



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 81/223 (36%), Gaps = 7/223 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 AATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           ++A  L ED +   +       + V   + ++ +   +E  V+
Sbjct: 201 MDAR-LHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVL 242


>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
 gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
          Length = 238

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T++  ++ ++   E    S + +L+ +         ++    
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQK 233


>gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
 gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
          Length = 246

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 23/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R IS     L+   GS     GDT+ I   TL    +++    L GT  
Sbjct: 1   MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATL----EDKVPPFLKGTGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   +      G  + R     RL  RA+  V+   A    T+ I  
Sbjct: 57  GWITAEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           ++ ++DG +  A++ G+ +AL+D             P+   +A +++G+V    D   + 
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVNTIYTDPEKPFPVKDFLAAVSVGVV----DGAAVL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  +  T +G +  +Q   +    ++  +   L   +RG   +++   
Sbjct: 173 DLCYAEDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQK 232

Query: 537 KVLSE 541
           +VL E
Sbjct: 233 EVLGE 237



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 85/227 (37%), Gaps = 23/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+V    G+T V+     +  +     G     +T  Y     + 
Sbjct: 12  RPISI-TRHYLKHAEGSVFIEVGDTKVICAATLEDKVPPFLKGTGEGWITAEYSLLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + R T     I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -QTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL--------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLD 175
            S+  A  AL   ++ +        P +  +    V  ++G  VL+    ED      ++
Sbjct: 128 ASITGAFVALVDAVNTIYTDPEKPFPVKDFLAAVSVGVVDGAAVLDLCYAEDSAAVVDMN 187

Query: 176 LFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + ++G  D V +    E +  ++  + + +  G      +I+   ++
Sbjct: 188 IVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQKEV 234


>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
 gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
 gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
 gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
          Length = 257

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G 
Sbjct: 18  DPMRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQ 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP AT   +R     G    R +   RL  R++  V+   A     + +
Sbjct: 74  GKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITV 133

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     
Sbjct: 134 DCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED---- 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+ 
Sbjct: 190 VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVA 249

Query: 534 EMS 536
              
Sbjct: 250 VQK 252



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           ++G+VL  +G T VL     +  +     GQ    +T  Y     A         RRE  
Sbjct: 43  AEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT----HSRTRREAT 98

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             +     + I R+I RS+R +       E  +    +V+Q D        S+  AS AL
Sbjct: 99  NGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG--TRTASITGASVAL 156

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQGSLDLFVSGTQD-A 184
                       L   P +G V    V  + G+ VL     +++     D+ V  T++  
Sbjct: 157 ADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAADTDMNVVMTEEGK 215

Query: 185 VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++   E    S + +L+ +         ++    
Sbjct: 216 MIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 259

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G PS R +   RL  R++  V+        T+ I  +
Sbjct: 59  WITSEYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL DA            +P+   VA +++G+V    D   L 
Sbjct: 119 VIQADGGTRTASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIV----DGNKLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+S  ED    +D  V  TD G I  +Q   + G  ++  +   L  A+ G   I+    
Sbjct: 175 DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQK 234

Query: 537 KV 538
           +V
Sbjct: 235 EV 236



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +   Q       +T  Y     A 
Sbjct: 13  RPIKI-TRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + RP+   + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 72  -ETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DL 176
            S+  +  AL            +  +P +G V    V  ++G  +L+    ED  +L D+
Sbjct: 129 ASITGSFIALADALNKLVEKGDIPKIPLKGFVAAVSVGIVDGNKLLDLSFQEDSNALVDM 188

Query: 177 FVSGT-QDAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  T +  ++ ++   E    ++  + D +       + +I+   ++
Sbjct: 189 NVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEV 236


>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 245

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DSTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHVVRQH 235



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 7/215 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++   + +    E+      L L +      + ++E
Sbjct: 141 AATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++A  L ED +   +       + V   +  + + 
Sbjct: 201 MDAR-LHEDHLEQVLEAAAQAARDVHTLLDHVVRQ 234


>gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus
           scrofa]
          Length = 243

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 10/237 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEASGRAP 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 R      Y+    +TGE  R     R+    G   R+A    +         + 
Sbjct: 64  ---LPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQID 120

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG    A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 121 IYVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 176

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 177 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQH 233



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R ++   G  A Q+DG+     G T  LA V             D   +   Y   T++ 
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEASGRAPLPDRALVNCQYSSATFST 81

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G+      +R          +   + ++            +Q+ I V     +   +   
Sbjct: 82  GE-----RKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADGGIYAAC 136

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLM 187
           +  A+ A++ +G+P    V      +++G  + +    E+      L L +      + +
Sbjct: 137 VNVATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIAL 196

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +E++A  L ED +   +       + V   + ++ +   +E
Sbjct: 197 LEMDAR-LHEDHLEQVLEAAAQAARDVHTVLDRVVRQHVQE 236


>gi|198284080|ref|YP_002220401.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667606|ref|YP_002426735.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248601|gb|ACH84194.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519819|gb|ACK80405.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 242

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ +   ++    +E+    L G  +
Sbjct: 2   IRPSGRNADALRPVQVTRNFTKHAEGSVLIACGDTKVLCTASV----EEKVPPFLRGAGK 57

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R++   +   A    T+ +  
Sbjct: 58  GWVTAEYSMLPRATRERVARESAKGRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+ D              P+   VA +++G+ +       +
Sbjct: 118 DVLQADGGTRTASITGACLAVADAVQHLRTVGQLRNNPLRDWVAAVSVGVYQ----GQAV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T +G    +Q   +    S   M   L  A++G   ++   
Sbjct: 174 LDLDYAEDSNADVDMNVVMTGAGAFVEVQGTAEGAVFSAEQMAEMLALARKGIAELVARQ 233

Query: 536 SKVLSESR 543
            +   E+R
Sbjct: 234 HQECPEAR 241



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 25/217 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T VL T   +  +           +T  Y     A  +        +
Sbjct: 23  KHAEGSVLIACGDTKVLCTASVEEKVPPFLRGAGKGWVTAEYSMLPRAT-RERVARESAK 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            R       I R+I RS+R         E    V  +V+Q D        S+  A  A+ 
Sbjct: 82  GRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDCDVLQADGG--TRTASITGACLAVA 139

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
                      L   P    V    V    GQ VL+    ED      +++ ++G   A 
Sbjct: 140 DAVQHLRTVGQLRNNPLRDWVAAVSVGVYQGQAVLDLDYAEDSNADVDMNVVMTG-AGAF 198

Query: 186 LMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
           + V+  A     S + + + +         ++    +
Sbjct: 199 VEVQGTAEGAVFSAEQMAEMLALARKGIAELVARQHQ 235


>gi|13543675|gb|AAH05986.1| PNPT1 protein [Homo sapiens]
          Length = 263

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +
Sbjct: 3   EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 62

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  
Sbjct: 63  KEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV 122

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGA 642
           D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V      
Sbjct: 123 DEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNM 182

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 183 TAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 233


>gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1]
 gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1]
          Length = 238

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G++ +     IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFAHLVAKGKLKANPMKGHVAAVSVGILGED----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    +   ++  L+ A +G   I+   
Sbjct: 173 CDLEYTEDSAADTDMNVVMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIVAAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KLALED 238



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R +       E  V    +V+Q D    
Sbjct: 71  ----HSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
               S+  AS A+            L   P +G V    V  +    + +    ED    
Sbjct: 125 TRTASISGASVAMADAFAHLVAKGKLKANPMKGHVAAVSVGILGEDILCDLEYTEDSAAD 184

Query: 174 LDLFVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            D+ V  T+D  ++ ++   E    +   ++  +   +     ++ A  
Sbjct: 185 TDMNVVMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIVAAQK 233


>gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
 gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
          Length = 239

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++     G    R +   RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+D            G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  TDS G   +Q   +        +   L+ A++G   +     
Sbjct: 175 DLDYLEDSAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQR 234

Query: 537 KVLSE 541
             L+E
Sbjct: 235 AALAE 239



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RPIRI-TRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A+ AL            L G P +  V    V    G  VL+    ED   +  L
Sbjct: 129 ASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++ +   +  V+  A         +   +       + + E        
Sbjct: 189 NVVMTDSGGFI-EVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239


>gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4]
 gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4]
          Length = 238

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EESVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A   + + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++GL+ +     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ AK G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS A+         SG     P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
             D+ V  T++  + +E++     E    + ++      K  I  I    K  
Sbjct: 184 DTDMNVVMTEEGKM-IEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAA 235


>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
 gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
          Length = 242

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 116/234 (49%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L    R+DGR  E  R ++ QVG+L   +GS+L   G+T  ++    G RE       +
Sbjct: 9   LLTDGKRVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNT-VVLAAVYGPREP--IPRYI 65

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +   +    + Y+  P +T +     AP+RREI   ++ ++A+  V+        T+ + 
Sbjct: 66  TVPDKAVVRVRYHMAPFSTDDRKN-PAPTRREIEISKVVKQALETVVFLEQYPKSTIDVF 124

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ ++DGS+ + ++  +SLAL DAG+P+   V G+++G + D     ++ D++  ED+ 
Sbjct: 125 LEVLQADGSTRVTSITAASLALADAGIPMRDLVVGVSVGKINDT----VIVDLNKLEDNY 180

Query: 487 GHMDFK--VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D    +A   + +  MQ+D        + +   L+ A +   +I   M +V
Sbjct: 181 GDGDLPIAIAYRKNWVLLMQLDGV---WKPSEVKRGLELAFKAAENIYRNMREV 231



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ ++ G +   ++G+ L  YG TVVLA V   R         P    + V Y    ++
Sbjct: 25  RPVTMQVGVL-PNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVRVRYHMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
                    R+   PT  EI IS+++ +++  +    +  K+   V + V+Q D   S  
Sbjct: 84  TDD------RKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQADG--STR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDA 184
           V S+ AAS AL  +G+P    VVG  V  IN   +++    ED    G L + ++  ++ 
Sbjct: 136 VTSITAASLALADAGIPMRDLVVGVSVGKINDTVIVDLNKLEDNYGDGDLPIAIAYRKNW 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           VL+++L+        V   +       + +   + ++ K
Sbjct: 196 VLLMQLDGVWKP-SEVKRGLELAFKAAENIYRNMREVLK 233


>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8G2]
          Length = 245

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 13/240 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR     R ++ +VG+L+   GS+    G  + +  V  G R+   +   
Sbjct: 10  LLDENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGV-FGPRDV--HPKH 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +S        + Y+  P +  E     APSRREI   ++ + A+ P +         + +
Sbjct: 67  MSNPDTGILRVRYHMEPFSVSERKN-PAPSRREIEISKVLKEALEPAVILEKFPRTAIDV 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG S  A +  +S+AL DAG+P+   V   A G   D     ++ D++ +ED 
Sbjct: 126 YLEVLQADGGSRCAALDAASVALADAGIPMRDMVCSCAAGKAAD----ALILDVNNEEDQ 181

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  +    +   IT +Q+D     ++ +     ++    G   +       L E  
Sbjct: 182 AGQADMPIGYMPNLGKITLLQLDGV---LTTDEFKKCIELGLEGCKQVYEIQKNALREKY 238



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 23/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R + ++ G + + +DG+    +G   +LA V   R +       P    L V Y    ++
Sbjct: 27  RKVTIKVGVL-KNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILRVRYHMEPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D  S   
Sbjct: 86  VSE------RKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQADGGS--R 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
             ++ AAS AL  +G+P    V            +L+   +ED   Q  + +        
Sbjct: 138 CAALDAASVALADAGIPMRDMVCSCAAGKAADALILDVNNEEDQAGQADMPIGYMPNLGK 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           + +++L+   L+ D     I  G   CK V     ++ K   +E   
Sbjct: 198 ITLLQLDG-VLTTDEFKKCIELGLEGCKQVY----EIQKNALREKYF 239


>gi|34785309|gb|AAH00862.2| PNPT1 protein [Homo sapiens]
          Length = 266

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 9/239 (3%)

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +
Sbjct: 6   EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 65

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  
Sbjct: 66  KEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV 125

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGA 642
           D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V      
Sbjct: 126 DEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNM 185

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
              L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ Q+    +V
Sbjct: 186 TAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL-QSPATTVV 243


>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
 gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
          Length = 255

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 96/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I      L+   GS L   GDT+ +  V++     E     L G  +
Sbjct: 1   MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSV----QESVPPFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G    R     R+  RA+   L  T     T  I  
Sbjct: 57  GWITAEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA +           PI   VA +++G+V D     IL
Sbjct: 117 DVLQADGGTRTAAITGAFVALADAVIKLYTEGVLTTTPIKDFVAAVSVGIVDDQ----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG I+ +    +    S   M   L  A  G   ++   
Sbjct: 173 LDLNFEEDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQ 232

Query: 536 SKVLS 540
                
Sbjct: 233 RSFFE 237



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    +  +G+VL  +G+T V+ TV    S+     G+    +T  Y     A 
Sbjct: 12  RKIRI-TRDYLKHPEGSVLVEFGDTKVVCTVSVQESVPPFLKGKGQGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
            +        + R       I RMI R++R         E    +  +V+Q D       
Sbjct: 71  -QTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL  + +           P +  V    V  ++ Q +L+   +ED   +  +
Sbjct: 128 AAITGAFVALADAVIKLYTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFEEDSRAKVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++  +G+   +  +     + +   + +   +       + ++E      ++  
Sbjct: 188 NVVATGS-GMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQRSFFEVRG 240


>gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 1 [Canis familiaris]
          Length = 245

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V +      L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNT----ALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  +A R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQH 235



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++   + +    E+      L L +      + ++E
Sbjct: 141 AATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +   +E
Sbjct: 201 MDAR-LHEDHLEQVLEAAARAARDVHTVLDRVVRQHVRE 238


>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
          Length = 249

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 8/233 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S     R+     Y+    +TGE  R     R+        ++     +         + 
Sbjct: 63  SKMLHDRSVVNCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I ++DG +    V  ++LA++DAG+P+   V   + G ++D      L+D+S  E+
Sbjct: 123 IYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCASSAGFIEDTP----LADLSYVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
             G     +A       I  ++M+ ++       ++ A  +A +    +L+++
Sbjct: 179 AAGGPQLALALLPKSDQIALLEMNSRLHEDHLERVMDAASKACKDVYAVLDQV 231



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 85/225 (37%), Gaps = 19/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTY 68
           R ++   G  A Q+DG+     G T  LA V     ++        D   +   Y   T+
Sbjct: 23  RKIRARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVVNCQYSMATF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           + G+      +R          ++  + ++           +++  + + ++Q D  +  
Sbjct: 82  STGE-----RKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADGGNY- 135

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
               + AA+ A++ +G+P    V  +   +I    + +    E+      L L +    D
Sbjct: 136 -CTCVNAATLAVIDAGIPMRDYVCASSAGFIEDTPLADLSYVEEAAGGPQLALALLPKSD 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + ++E+ +  L ED +   +      CK V   + ++ +   +E
Sbjct: 195 QIALLEMNSR-LHEDHLERVMDAASKACKDVYAVLDQVVREHLQE 238


>gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
 gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
          Length = 238

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 22/234 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++ +R I+      +   GS L   GDT+ +   T+    DE+    L G  + 
Sbjct: 3   RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATV----DEKVPPFLRGKGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y+ LP AT   +      PS R +   RL  RA+  V+  +A    T+ +  ++ 
Sbjct: 59  WITAEYSMLPRATEVRNIRETLRPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL D              PI   VA I+ G+V    D   + D+
Sbjct: 119 QADGGTRTASITGAFIALGDAIRTLKDNKEIETNPIKSYVAAISAGIV----DGEKMLDL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             +ED    +D  +  TD G I  +Q   +    +   M   +  A +G   ++
Sbjct: 175 RFEEDSRAQVDMNLVMTDEGQIVEIQGTGEAFPFTRQDMNDLIDLAFKGISELV 228



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 28/229 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL   G+T V+ T   D  +     G+    +T  Y     A 
Sbjct: 13  RPITI-TRNFNKYAEGSVLIEAGDTKVVCTATVDEKVPPFLRGKGQGWITAEYSMLPRA- 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
                  +R   RP+   + I R+I R++R +       E  +    +V+Q D       
Sbjct: 71  --TEVRNIRETLRPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVIQADGG--TRT 126

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            +   P +  V       ++G+ +L+ R +ED   Q  +
Sbjct: 127 ASITGAFIALGDAIRTLKDNKEIETNPIKSYVAAISAGIVDGEKMLDLRFEEDSRAQVDM 186

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++  +  ++ ++        +   + D I         ++    KL
Sbjct: 187 NLVMT-DEGQIVEIQGTGEAFPFTRQDMNDLIDLAFKGISELVCIQKKL 234


>gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 5 [Canis familiaris]
          Length = 238

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 15/237 (6%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E   +  
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEASGH-- 61

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 62  ------RALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQID 115

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V +      L+D+S  E+
Sbjct: 116 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNT----ALADLSHVEE 171

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  +A R    +L+ + +  
Sbjct: 172 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQH 228



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++   G  A Q+DG+     G T  LA V         +    +   Y   T++ G+ 
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEASGHR--ALVNCQYSSATFSTGE- 78

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
                +R          +   + ++            +Q+ I V     +   +   + A
Sbjct: 79  ----RKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNA 134

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVEL 190
           A+ A++ +G+P    V      +++   + +    E+      L L +      + ++E+
Sbjct: 135 ATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGPQLALALLPASGQIALLEM 194

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +A  L ED +   +       + V   + ++ +   +E
Sbjct: 195 DAR-LHEDHLEQVLEAAARAARDVHTVLDRVVRQHVRE 231


>gi|31335241|gb|AAP44472.1| PNPase [Homo sapiens]
          Length = 275

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + +D+ +L+DI G ED+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +
Sbjct: 15  EIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAK 74

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             IL  M+K +S+ R    E  P VE + +P  +    +G GG  ++ +  +TG  ++  
Sbjct: 75  KEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV 134

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGA 642
           D+ T  + + + + +  AR+ I  I         E   +Y   + ++ D G  V      
Sbjct: 135 DEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNM 194

Query: 643 RDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              L+H +QL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 195 TAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 245


>gi|86747551|ref|YP_484047.1| ribonuclease PH [Rhodopseudomonas palustris HaA2]
 gi|123099251|sp|Q2J324|RNPH_RHOP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86570579|gb|ABD05136.1| RNAse PH [Rhodopseudomonas palustris HaA2]
          Length = 237

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  + R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D            G  +   VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAWVALADCLAWMKTRNMLKGQVMRDNVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    S++  +  +  A++G   +++  
Sbjct: 173 LDLDYAEDSEAETDANFVMTGDGRIVEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KMAVA 237



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  LE----RTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            L G      V        NG  VL+    ED   +
Sbjct: 125 TRTASITGAWVALADCLAWMKTRNMLKGQVMRDNVAAISCGIYNGTPVLDLDYAEDSEAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G    ++ V+  A +   S+D  L  +         +++       
Sbjct: 185 TDANFVMTG-DGRIVEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQKMAVA 237


>gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
 gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G++ +     IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGED----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    +   ++  L+ A +G   I+   
Sbjct: 173 CDLEYTEDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R +       E  V    +V+Q D    
Sbjct: 71  ----HSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
               S+  AS A+            L   P +G V    V  +    + +    ED    
Sbjct: 125 TRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGEDILCDLEYTEDSAAD 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T+D  + +E++     E      ++  +         ++ A     +
Sbjct: 185 TDMNVVMTEDGRM-IEVQGTAEGEPFTHAELMKLLESATKGISEIVAAQKAALE 237


>gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
 gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
          Length = 248

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN LP +T    +          R +   RL  RA+   +   A    T+ I  
Sbjct: 57  GWITAEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V +      +
Sbjct: 117 DVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIVGEEK----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +EDH+  +D  V  T+ G    +Q   + G  S   +   L  A++G   ++   
Sbjct: 173 LDLCYEEDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KDA 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RPVKI-TRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWITAEYNMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                  + +  +     + I R+I R++R         E    +  +V+Q D       
Sbjct: 71  QSRKQRDINK-LKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLS------GLPFEGP-----VVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S+  +  AL+ +        PF        V    V  +  + +L+   +ED    +D+
Sbjct: 128 TSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIVGEEKILDLCYEEDHIAKVDM 187

Query: 177 FVSGTQDA-VLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V  T++   + ++   EA   S   + + +       K +I+A     K
Sbjct: 188 NVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALK 237


>gi|300024890|ref|YP_003757501.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526711|gb|ADJ25180.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
          Length = 237

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 95/242 (39%), Gaps = 26/242 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S +  + +   GS L   GDT  +   +L    +E+    L G  R
Sbjct: 1   MRPSKRKPDELRRVSIERAVSKHAEGSCLIKFGDTHVLCTASL----EERLPQWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E +R     G PS R     RL  RA+  V+         + +  
Sbjct: 57  GWVTAEYSMLPRATHERTRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             GV +   VA ++ G+ K       
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCIQWMKMRDMVKDGV-LRDHVAAVSCGIYKGDP---- 171

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    +E      L  AK+G   ++  
Sbjct: 172 VLDLDYAEDSNADADSNFVMTGTGGIVEIQGTAETTPFTEERFGDLLTLAKKGIGELVQL 231

Query: 535 MS 536
             
Sbjct: 232 QK 233



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + +E   +++ ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RRVSIER-AVSKHAEGSCLIKFGDTHVLCTASLEERLPQWLKGQGRGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
            +      RRE     P+     I R++ R++R +    K  + +  V  +V+Q D    
Sbjct: 71  HER----TRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +        V         G  VL+    ED    
Sbjct: 125 TRTASITGAWVALHDCIQWMKMRDMVKDGVLRDHVAAVSCGIYKGDPVLDLDYAEDSNAD 184

Query: 172 GSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++GT   ++ ++  A     +E+   D +         +++   
Sbjct: 185 ADSNFVMTGT-GGIVEIQGTAETTPFTEERFGDLLTLAKKGIGELVQLQK 233


>gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
 gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
          Length = 248

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN LP +T    +          R +   RL  RA+   +   A    T+ I  
Sbjct: 57  GWITAEYNMLPRSTQSRKQREINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V +      +
Sbjct: 117 DVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIVGEEK----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +EDH+  +D  V  T+ G    +Q   + G  S   +   L  A++G   ++   
Sbjct: 173 LDLCYEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KDA 235



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RPVKI-TRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWITAEYNMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                  + +  +     + I R+I R++R         E    +  +V+Q D       
Sbjct: 71  QSRKQREINK-LKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLS------GLPFEGP-----VVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S+  +  AL+ +        PF        V    V  +  + VL+   +ED    +D+
Sbjct: 128 TSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIVGEEKVLDLCYEEDHVAKVDM 187

Query: 177 FVSGTQDA-VLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V  T++   + ++   EA   S   + + +       K +I+A     K
Sbjct: 188 NVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALK 237


>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
 gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
          Length = 245

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  ARALPDRPLVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  +A R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQH 235



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 83/227 (36%), Gaps = 15/227 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLT----VNYQERTY 68
           R ++   G  A Q+DG+     G T  LA V     ++  +    P        Y   T+
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLVNCQYSSATF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G+      +R          +   + ++            +Q+ I V     +   + 
Sbjct: 82  STGE-----RKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYA 136

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
             + AA+ A++ +G+P    V      +++G  + +    E+      L L +      +
Sbjct: 137 ACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQI 196

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            ++E++A  L ED +   +       + V   + ++ +   +E  V+
Sbjct: 197 ALLEMDAR-LHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEASVL 242


>gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4]
 gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4]
          Length = 454

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 108/247 (43%), Gaps = 23/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++  R ++ +   L+   GS L   GDT+ I   T+ TR        L G   
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETR----VPRFLKGMGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  S R +   RL  R++   +   A    ++ +  
Sbjct: 57  GWVHAEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSSIDLEALGERSITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L+D+G     PI + VA I++G++KDG+    +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIQTLLDSGELTESPIKENVAAISVGILKDGE---AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T  G    +Q   +    S   + + L+  K+G   ++   
Sbjct: 174 LDLNYLEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQ 233

Query: 536 SKVLSES 542
                ++
Sbjct: 234 DDAFQQA 240



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 97/283 (34%), Gaps = 35/283 (12%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLK--DGQDFFPLTVNYQERTYA 69
            R + +ET  + +  +G+VL ++G+T V+     + R  +   G     +   Y     A
Sbjct: 11  NRLVTIETNYL-KHPEGSVLVSFGDTKVICNATIETRVPRFLKGMGSGWVHAEYSMLPRA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
                      + + +   + I R+I RS+R         E    V  +V+Q D      
Sbjct: 70  TN-TRNIREAAKGKLSGRTMEIQRLIARSLRSSIDLEALGERSITVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG--- 172
             S+  A  AL L+             P +  V    V    +G+ VL+    ED     
Sbjct: 127 TASITGAFVALKLAIQTLLDSGELTESPIKENVAAISVGILKDGEAVLDLNYLEDSSAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMC----- 225
            ++L ++ +    + ++    +   S + +   + FG      +I+      +       
Sbjct: 187 DMNLVMT-SLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDDAFQQALSLKN 245

Query: 226 -AKEPIVIDSKDFSKLEEEMSQMIK--EDLRVSCFIPEKYVRC 265
              +P  +  KD   +    +   +  E L        K +R 
Sbjct: 246 NGIKPYPLIPKDEILIATANAGKAREFEALFAKKGFKVKTLRD 288


>gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 245

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 104/237 (43%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEMRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  SRALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGNYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       +  ++MD ++       ++    QA R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQLALLEMDARLHEDHLQQVLEVASQAARDVHALLDRVVRQH 235



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 87/229 (37%), Gaps = 19/229 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-----DFFPLTVNYQERTY 68
           R ++   G  A Q+DG+     G T  LA V     ++  +     D   +   Y   T+
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALVNCQYSMATF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           + G+      +R          +   + ++           +++  + + V+Q D  +  
Sbjct: 82  STGE-----RKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVLQADGGNYA 136

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
               + AA+ A++ +G+P    V      +++G  + +    E+      L L +     
Sbjct: 137 --ACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASG 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
            + ++E++A  L ED +   +       + V   + ++ +   +E  ++
Sbjct: 195 QLALLEMDAR-LHEDHLQQVLEVASQAARDVHALLDRVVRQHVREAALL 242


>gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16]
 gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16]
          Length = 240

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++  V+   A     + +  
Sbjct: 59  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G++ +     IL
Sbjct: 119 DVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGED----IL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    +   ++  L+ A +G   I+   
Sbjct: 175 CDLEYTEDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQ 234

Query: 536 SKV 538
              
Sbjct: 235 KAA 237



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     + 
Sbjct: 14  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRST 72

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R +       E  V    +V+Q D    
Sbjct: 73  ----HSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQADGG-- 126

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
               S+  AS A+            L   P +G V    V  +    + +    ED    
Sbjct: 127 TRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGEDILCDLEYTEDSAAD 186

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T+D  + +E++     E      ++  +         ++ A     +
Sbjct: 187 TDMNVVMTEDGRM-IEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALE 239


>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix
           jacchus]
          Length = 245

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA +    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAAQDVHILLDRVVRQH 235



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 AATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +   +E
Sbjct: 201 MDAR-LHEDHLEQVLEAAAQAAQDVHILLDRVVRQHVRE 238


>gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1]
 gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
 gi|12230959|sp|P50597|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122256498|sp|Q02E28|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736925|sp|B7V5M5|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa In Complex With Phosphate
 gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
          Length = 239

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++     G    R +   RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+D            G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  TD  G   +Q   +        +   L+ A++G   +     
Sbjct: 175 DLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQR 234

Query: 537 KVLSE 541
             L+E
Sbjct: 235 AALAE 239



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RPIRI-TRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A+ AL            L G P +  V    V    G  VL+    ED   +  L
Sbjct: 129 ASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++      + V+  A         +   +       + + E        
Sbjct: 189 NVVMT-DAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239


>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8O8]
          Length = 245

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 13/240 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR     R ++ + G+L+   GS+    G  + +  V  G R+   +   
Sbjct: 10  LLDENGIRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGV-FGPRDV--HPKH 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           LS        + Y+  P +  E     APSRREI   ++ + A+ P +         + +
Sbjct: 67  LSNPDTGILRVRYHMEPFSVDERKN-PAPSRREIEISKVVKEALEPAVILEKFPRTVIDV 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +  A +  +S+AL DAG+P+   V   A G V D     ++ D++ +ED 
Sbjct: 126 FLEVLQADGGTRCAALDAASVALADAGIPMRDMVCACAAGKVADT----LIIDVNNEEDQ 181

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  V    +   +T +Q+D     ++       ++    G   +     + L E  
Sbjct: 182 AGQADMPVGYMPNLGKVTLLQLDGV---LTPEEFKKCVELGIEGSKQVYEIQKQALREKY 238



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 17/219 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R + ++ G + + +DG+    +G   +LA V   R +       P    L V Y    ++
Sbjct: 27  RKVTIKAGVL-KNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGILRVRYHMEPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P+  EI IS+++  ++ P  +  K  +    V + V+Q D      
Sbjct: 86  VDE------RKNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQADGG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD-AV 185
             ++ AAS AL  +G+P    V       +    +++   +EDQ G  D+ V    +   
Sbjct: 138 CAALDAASVALADAGIPMRDMVCACAAGKVADTLIIDVNNEEDQAGQADMPVGYMPNLGK 197

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +      L+ +     +  G    K V E   +  + 
Sbjct: 198 VTLLQLDGVLTPEEFKKCVELGIEGSKQVYEIQKQALRE 236


>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii]
          Length = 343

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 8/235 (3%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           + D+  R+DGR +  +R I A++G+  +  GS    +G+T+A+ VV  G  E      + 
Sbjct: 105 LSDQGYRVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVV-YGPHEIRGS-RAR 162

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +   R      Y+    +TGE  R     R+    G   R+     +         + I 
Sbjct: 163 ALPDRALVNCQYSSATFSTGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 222

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+  
Sbjct: 223 VQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEEAA 278

Query: 487 GHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 279 GGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQH 333



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 121 RKIQARMGVFA-QADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 178

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 179 FSTGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 238

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 239 AATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 298

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +   +E
Sbjct: 299 MDAR-LHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 336


>gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
 gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
          Length = 238

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G++ +     IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGED----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    +   ++  L+ A +G   I+   
Sbjct: 173 CDLEYTEDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R +       E  V    +V+Q D    
Sbjct: 71  ----HSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
               S+  AS A+            L   P +G V    V  +    + +    ED    
Sbjct: 125 TRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGEDILCDLEYTEDSAAD 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T+D  + +E++     E      ++  +         ++ A     +
Sbjct: 185 TDMNVVMTEDGRM-IEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALE 237


>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus
           scrofa]
          Length = 245

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +TGE  R     R+    G   R+A    +         + 
Sbjct: 63  SRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG    A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQH 235



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++       P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADGGIYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
            A+ A++ +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 VATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +   +E
Sbjct: 201 MDAR-LHEDHLEQVLEAAAQAARDVHTVLDRVVRQHVQE 238


>gi|312113394|ref|YP_004010990.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
 gi|311218523|gb|ADP69891.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
          Length = 237

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +S Q        GS L   G+T  +   +L    +++    L G  R
Sbjct: 1   MRPSKRQAGDLRPVSFQRAFSHHAEGSCLIKFGNTHVLCTASL----EDRVPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWITAEYGMLPRATSDRTRREATTGHQSGRSQEIQRLIGRSLRAVVDLQALGERQIMVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D            G P+   VA I+ G+ K       +
Sbjct: 117 DVLQADGGTRTASITGAWVALHDCFQWMRARDMLRGEPMKDNVAAISCGIYKGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   + G  SE  M      AK+G   ++N  
Sbjct: 173 LDLDYPEDSDAEADANFVFTGKGQIVEIQATAEKGAFSEERMAELTALAKKGIAELVNLQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 75/217 (34%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           ++G+ L  +G T VL T   +  +     GQ    +T  Y     A         RRE  
Sbjct: 24  AEGSCLIKFGNTHVLCTASLEDRVPPWLKGQGRGWITAEYGMLPRATSD----RTRREAT 79

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
               +     I R+I RS+R +       E Q++   +V+Q D        S+  A  AL
Sbjct: 80  TGHQSGRSQEIQRLIGRSLRAVVDLQALGERQIMVDCDVLQADGG--TRTASITGAWVAL 137

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDA 184
                       L G P +  V         G+ VL+   P   + +   +   +G +  
Sbjct: 138 HDCFQWMRARDMLRGEPMKDNVAAISCGIYKGEAVLDLDYPEDSDAEADANFVFTG-KGQ 196

Query: 185 VLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++  A     SE+ + +           ++    
Sbjct: 197 IVEIQATAEKGAFSEERMAELTALAKKGIAELVNLQK 233


>gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555]
 gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016]
 gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555]
 gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 248

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R +       +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASI----EDKVPPFLKGRGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN +P AT          G    R +   R+  RA+  V+   A    T+ +  
Sbjct: 57  GWITCEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   V+ +++G+V D      +
Sbjct: 117 DVIQADGGTRTASISGAFVALVDAVNKLHKQNPFTIYPIRDFVSAVSVGIVNDT----RM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  TDSG    +Q   +    +   +   L  A++G   +++  
Sbjct: 173 LDLCYLEDSRAKVDMNVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSMISAQ 232

Query: 536 SK 537
             
Sbjct: 233 KD 234



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T V+ T   +  +     G+    +T  Y     A 
Sbjct: 12  RPVKI-TRNYTKYAEGSVLIENGDTKVICTASIEDKVPPFLKGRGEGWITCEYNMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                  + R  R     + I R+I R++R +       E    V  +V+Q D       
Sbjct: 71  QVRKARDINR-GRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL   ++ L         P    V    V  +N   +L+    ED   +  +
Sbjct: 128 ASISGAFVALVDAVNKLHKQNPFTIYPIRDFVSAVSVGIVNDTRMLDLCYLEDSRAKVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++ + + V +    E N  + + + + +       K +I A     KM
Sbjct: 188 NVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSMISAQKDSLKM 238


>gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
 gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
          Length = 248

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN LP +T    +          R +   RL  RA+   +   A    T+ I  
Sbjct: 57  GWITAEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V +      +
Sbjct: 117 DVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIVGEEK----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +EDH+  +D  V  T+ G    +Q   + G  S   +   L  A++G   ++   
Sbjct: 173 LDLCYEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KDA 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RPVKI-TRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWITAEYNMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                  + +  +     + I R+I R++R         E    +  +V+Q D       
Sbjct: 71  QSRKQRDINK-LKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLS------GLPFEGP-----VVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S+  +  AL+ +        PF        V    V  +  + +L+   +ED    +D+
Sbjct: 128 TSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSVGIVGEEKILDLCYEEDHVAKVDM 187

Query: 177 FVSGTQDA-VLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V  T++   + ++   EA   S   + + +       K +I+A     K
Sbjct: 188 NVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALK 237


>gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
 gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
          Length = 261

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R I       +   GS L   G+T+ I   ++    +++      GT + 
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASI----EDKVPPFQKGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G PS R +   RL  R++  V+        T+ I  +
Sbjct: 59  WITSEYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL D           + +P+   VA +++G+V    D   L 
Sbjct: 119 VIQADGGTRTASITGSFIALADALNKLVEKGDISKIPLKGFVAAVSVGIV----DGNKLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+S  ED    +D  V  TD G I  +Q   + G  ++  +   L  A+ G   I+    
Sbjct: 175 DLSFQEDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQK 234

Query: 537 KVLSESRLQL 546
           +VLS+   ++
Sbjct: 235 EVLSDIVDKI 244



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +   Q       +T  Y     A 
Sbjct: 13  RPIKI-TRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + RP+   + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 72  -ETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DL 176
            S+  +  AL            +S +P +G V    V  ++G  +L+    ED  +L D+
Sbjct: 129 ASITGSFIALADALNKLVEKGDISKIPLKGFVAAVSVGIVDGNKLLDLSFQEDSNALVDM 188

Query: 177 FVSGTQDA-VLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  T    ++ ++   E    ++  + D +       + +I+   ++
Sbjct: 189 NVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEV 236


>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
 gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
          Length = 244

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGRD E +R I  + G+L R  GS     G  +  V    G RE   +   L   
Sbjct: 9   NGKRLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKV-VAAVYGPREV--HPKHLEDP 65

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +      Y+  P +  E  R G P RR I   +++R A+ PV+ +       + I  E+
Sbjct: 66  SKAIIRYRYSMAPFSVEERKRPG-PDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEV 124

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++D  S  A +  +S+AL+DAG+P+   V  +A+  V    D I++ D   +ED+ G  
Sbjct: 125 LQADAGSRTACLNAASVALIDAGIPMKGMVTSVAVAKV----DGILVLDPMKEEDNYGEA 180

Query: 490 DFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           D   A    +  I ++ +    G +S+  +  AL+ AK+G + I     + + +  +
Sbjct: 181 DIPFAFLIRNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREAILKKYI 237



 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + R +DG+     G   V+A V   R +       P    +   Y    ++
Sbjct: 22  RPIKIEAGVLNR-ADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAIIRYRYSMAPFS 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   ++ P+  K    ++   + + V+Q D  S   
Sbjct: 81  VEE------RKRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQADAGS--R 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS-----GT 181
              + AAS AL+ +G+P +G V    V  ++G  VL+P  +ED  G  D+  +     G 
Sbjct: 133 TACLNAASVALIDAGIPMKGMVTSVAVAKVDGILVLDPMKEEDNYGEADIPFAFLIRNGK 192

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPIVID 233
            +++ +++++   +S++ +  A+         + +   + + K   KE  V++
Sbjct: 193 IESITLLQMDGR-VSKEELKKALEMAKKGAMQIYQLQREAILKKYIKEEEVME 244


>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
          Length = 245

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      Y+    +T E  R     R+    G   R+     +         + 
Sbjct: 63  SRALPDRALVNCQYSSATFSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALTDLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA RG   +L+ + +  
Sbjct: 179 ASGSPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARGVHTLLDRVVRQH 235



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++       P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
                 +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 AATLAVLDAGIPMRDFVCACSAGFVDGTALTDLSHVEEASGSPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +   +E
Sbjct: 201 MDAR-LHEDHLEQVLEAAAQAARGVHTLLDRVVRQHVRE 238


>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
 gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
          Length = 297

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 12/236 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
              + D+ +R+DGR  + +R +  ++G+L R  GS     G+ + +  V  G R  E + 
Sbjct: 6   ERFIDDEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAV-YGPR--ELHP 62

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             +           YN    +  +  R G PSRR     +++  A  PV+         +
Sbjct: 63  RRMQKPNEVLVRYKYNMASFSVEDRIRPG-PSRRSTEISKVSGEAFEPVVMTQYYPGAVI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            + +E+ ++D  +  A +  ++LAL DAG+P+   V+  A+G V    D  ++ D++  E
Sbjct: 122 DVFAEVLQADAGTRTAAINAATLALADAGIPMKGLVSACAVGKV----DGQLVLDLNKPE 177

Query: 484 DHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           D+ G  D  VA T  G IT +QMD   G ++   +   L+  K+G   I+    + 
Sbjct: 178 DNYGQADLPVAMTQDGEITLLQMD---GHLTPEELEEGLEMVKKGCQQIIEIQREA 230



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 16/215 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G ++R +DG+    +G   VLA V   R L   +   P    +   Y   +++
Sbjct: 25  RPMKVEMGVLSR-ADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLVRYKYNMASFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
           V        R    P+     IS++   +  P+    Y       V   V+Q D      
Sbjct: 84  VED------RIRPGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVLQADAG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
             ++ AA+ AL  +G+P +G V    V  ++GQ VL+    ED  G  DL V+ TQD  +
Sbjct: 136 TAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNYGQADLPVAMTQDGEI 195

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +      L+ + + + +      C+ +IE   + 
Sbjct: 196 TLLQMDGHLTPEELEEGLEMVKKGCQQIIEIQREA 230


>gi|13473880|ref|NP_105448.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
 gi|21759410|sp|Q98DN6|RNPH_RHILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|14024631|dbj|BAB51234.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R IS + G+ +   GS L   GDT  +   +L    +E+    +  + +
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D    +           +   VA I+ G+     D   
Sbjct: 117 DVIQADGGTRTASITGGWVALYDCLRWMEARQMASVSKVLKDHVAAISCGI----HDGQP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE+     +  AK+G   +++ 
Sbjct: 173 VIDLDYLEDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QQMAVA 238



 Score = 73.8 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 85/236 (36%), Gaps = 35/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +  E G +++ ++G+ L  +G+T VL T   +  +           +T  Y     + 
Sbjct: 12  RAISFERG-VSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     +RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GER----MRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
               S+     AL              +S +  +  V        +GQ V++    ED  
Sbjct: 125 TRTASITGGWVALYDCLRWMEARQMASVSKV-LKDHVAAISCGIHDGQPVIDLDYLEDSA 183

Query: 173 ---SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
                +  ++G +  ++ ++   E    SED   + +       + ++        
Sbjct: 184 AGTDANFVMTG-KGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSLQQMAVA 238


>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
 gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta]
 gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes]
 gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus
           leucogenys]
 gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41; AltName: Full=p12A
 gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
 gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
 gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
 gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
 gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
 gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
          Length = 245

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 63  ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQH 235



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 23  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 81  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 140

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 141 AATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 200

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +   +E
Sbjct: 201 MDAR-LHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238


>gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 238

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G++       IL
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFETLVKSGKLKHNPMKGHVAAVSVGILGQD----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   + + L  A++G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDGRMIEVQGTAEGEPFSRQELNVLLDVAEKGIADIVKAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KLA 235



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPIKM-TRHYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  +RRE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS A+            L   P +G V    V  + GQ +L     +++   
Sbjct: 125 TRTASISGASVAMADAFETLVKSGKLKHNPMKGHVAAVSVGIL-GQDILCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             D+ V  T+D  ++ V+   E    S   +   +         +++A  
Sbjct: 184 DTDMNVVMTEDGRMIEVQGTAEGEPFSRQELNVLLDVAEKGIADIVKAQK 233


>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
 gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
 gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
          Length = 238

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           ++G+VL  +G T VL     +  +     GQ    +T  Y     A         RRE  
Sbjct: 24  AEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT----HSRTRREAT 79

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             +     + I R+I RS+R +       E  +    +V+Q D        S+  AS AL
Sbjct: 80  NGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG--TRTASITGASVAL 137

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQGSLDLFVSGTQD-A 184
                       L   P +G V    V  + G+ VL     +++     D+ V  T++  
Sbjct: 138 ADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAADTDMNVVMTEEGK 196

Query: 185 VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++   E    S + +L+ +         ++    
Sbjct: 197 MIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32]
 gi|254808602|sp|B7VHJ7|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32]
          Length = 238

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIV----GAQAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A +G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 30/234 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAA-------LMLSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A       L+ SG     P +G V    V  +  Q + +    ++    
Sbjct: 125 TRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIVGAQALCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V  T+D  ++ ++   E    S + ++  +   +     ++EA       
Sbjct: 185 TDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQKAALAD 238


>gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01]
 gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01]
          Length = 238

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIV----GAQAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A +G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGITDIVEAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 30/234 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAA-------LMLSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A       L+ SG     P +G V    V  +  Q + +    ++    
Sbjct: 125 TRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIVGAQALCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V  T+D  ++ ++   E    S + ++  +   +     ++EA       
Sbjct: 185 TDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGITDIVEAQKAALAD 238


>gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 259

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+DGRD +++R I       +   GS L   G+T+ I   ++    +++      GT +
Sbjct: 2   KRVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASI----EDKVPPFQKGTGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT   ++     G  S R +   RL  RA+  V+   A    T+ I  
Sbjct: 58  GWITSEYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL+D           + +PI   VA +++G+V D      L
Sbjct: 118 DVIQADGGTRTASITGSFVALVDAMNKLLQKGVISKMPIKSFVAAVSVGIVGDNK----L 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   H+D  +  TD G    +Q   + G  S++     L  A+ G   I+   
Sbjct: 174 LDLCYLEDCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQ 233

Query: 536 SKVLSESRLQL 546
            + L +  L++
Sbjct: 234 KEALGDISLKI 244



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    R ++G+VL   G T V+ T   +  +   Q       +T  Y     A 
Sbjct: 13  RPIKI-TRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITSEYSMIPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + +   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 72  -ETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  +  AL           ++S +P +  V    V  +    +L+    ED      +
Sbjct: 129 ASITGSFVALVDAMNKLLQKGVISKMPIKSFVAAVSVGIVGDNKLLDLCYLEDCNAHVDM 188

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + + +    E    S+D   + +    +    +IE   + 
Sbjct: 189 NIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQKEA 236


>gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11]
 gi|226736949|sp|B5FFE2|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11]
          Length = 238

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL D              P+   VA +++G+         +
Sbjct: 117 DVIQADGGTRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVGIYNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A++G   I+ + 
Sbjct: 173 CDLEYLEDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 82/234 (35%), Gaps = 30/234 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L     A  ++G+VL  +G T V+ T   + ++     G+    +T  Y     A 
Sbjct: 12  RPITLTRNFTAH-AEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R         E    V  +V+Q D    
Sbjct: 71  ----HTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS AL            L   P +G V    V   NG+ + +    ++    
Sbjct: 125 TRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYLEDSAAD 184

Query: 174 LDL-FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            D+  V      ++ V+  A +   S   +LD +         +IE        
Sbjct: 185 TDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238


>gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80]
 gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80]
          Length = 229

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 24/236 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R ++ VR I           GS L   G+T+ +   ++    +E     L G  +
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   +
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADM 228



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 32/222 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKI-TRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS AL            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNEC 211
             D+ V  T++  ++ ++   E    S + +L+ +       
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGI 225


>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 249

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 9   ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-R 66

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +   R      Y+    +TGE  R     R+    G   R+     +         + 
Sbjct: 67  ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A V  ++LA++DAG+P+   V   + G V    D   L+D+S  E+
Sbjct: 127 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVEE 182

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G     +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 183 AAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQH 239



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 7/219 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-DFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++  +    P       + Y+   
Sbjct: 27  RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQ-YSSAT 84

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
              G  +R          +   + ++            +Q+ I V     +   +   + 
Sbjct: 85  FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVN 144

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           AA+ A++ +G+P    V      +++G  + +    E+      L L +      + ++E
Sbjct: 145 AATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLE 204

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++A  L ED +   +       + V   + ++ +   +E
Sbjct: 205 MDAR-LHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 242


>gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
          Length = 238

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++ +     +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFQHLIENGKLKKNPMKGHVAAVSVGILGED----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    +   ++  L+ A +G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R +       E  V    +V+Q D    
Sbjct: 71  ----HSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               S+  AS A+            L   P +G V    V  + G+ VL     +++   
Sbjct: 125 TRTASISGASVAMADAFQHLIENGKLKKNPMKGHVAAVSVGIL-GEDVLCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAK 223
             D+ V  T+D  + +E++     E      ++  +         ++ A     +
Sbjct: 184 DTDMNVVMTEDGRM-IEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALE 237


>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
          Length = 242

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 13/239 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+ GR  E +R I   VG+L+R  GS  F  G+ +AI  V  G RE   +    
Sbjct: 8   LIKDGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAV-YGPREM--HPRHF 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +       YN  P +  +  R G P RR      ++R+A+ PV+ +       + + 
Sbjct: 65  QNAKMAVVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ +A+G +    D  ++ D+   ED+ 
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMKDLVSSVAIGKI----DGEVVLDLDAKEDNF 179

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           G  D  +A     + IT +QMD   G + +      LQ A  G   I       L E  
Sbjct: 180 GEADMPIAMVARTNTITLLQMD---GRLKKEEFERGLQLAMTGCRKIYELQKAALVEKY 235



 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 88/221 (39%), Gaps = 17/221 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K++ G + +++DG+     G    +A V   R +            +   Y    ++
Sbjct: 24  RPIKIDVGVL-KRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAVVKYRYNMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           V        R+   P      IS +  +++ P+  +    +T + + V     ++     
Sbjct: 83  VDD------RKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTA 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            + AAS AL  +G+P +  V    +  I+G+ VL+    ED   +  + + +    + + 
Sbjct: 137 GINAASVALADAGIPMKDLVSSVAIGKIDGEVVLDLDAKEDNFGEADMPIAMVARTNTIT 196

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +++++   L ++     +      C+ + E     A +  K
Sbjct: 197 LLQMDGR-LKKEEFERGLQLAMTGCRKIYELQK--AALVEK 234


>gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
 gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
          Length = 241

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R I  ++G + +  GS+ F  G+T+ I  V  G RE E    
Sbjct: 2   EFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAV-YGPREVENRSQ 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +S   +      Y     +TG+  R     RR      + R+ +   +         + 
Sbjct: 61  QIS--DQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED
Sbjct: 119 IFVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTP----LLDLNYVED 174

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G  D  V        +T +QMD K   +  +I    +Q A  G   I N + +VL E+
Sbjct: 175 SAGGPDVTVGILPKLDKVTLLQMDAK---LPMDIFENVMQLAIEGCKAIANYIREVLLEN 231

Query: 543 RLQLG 547
             QL 
Sbjct: 232 TKQLE 236



 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 18/217 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R ++ E G +A+ +DG+     G T V+A V   R +++      D   +   Y    ++
Sbjct: 20  RQIRGEIGAVAK-ADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALVRCEYTMANFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPH 127
            G        R+ +       IS +I +++          +++  + + V+Q D      
Sbjct: 79  TGD-----RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG--TR 131

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGT---QDA 184
              + AA+ AL  +G+P    V      Y+N   +L+    ED         G     D 
Sbjct: 132 SACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDK 191

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           V +++++A  L  D+  + +      CK +   I ++
Sbjct: 192 VTLLQMDAK-LPMDIFENVMQLAIEGCKAIANYIREV 227


>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
          Length = 247

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR  + +R I  +VG+L+R  GS     GD + I  V  G RE   +    
Sbjct: 7   LIKDGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAV-YGPREM--HPRHA 63

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +       YN  P +T +  R G P RR +   ++ R A  PV+ +       + + 
Sbjct: 64  QDAKMAVVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVY 122

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ IA+G +       ++ D++  ED+ 
Sbjct: 123 VELLQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVGKINGE----MVLDLNAAEDNN 178

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D  +A     + ITA+QMD   G +++      L+ A      I       
Sbjct: 179 GEADMPIAMIARTNTITALQMD---GRLTKEEFERGLKLAVGACHQIYELQRTA 229



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 84/212 (39%), Gaps = 15/212 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K+E G + +++DG+     G+  V+A V   R +            +   Y    ++
Sbjct: 23  RPIKIEVGVL-KRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVKFRYNMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                    R+   P    + IS++   +  P+  +    +  + + V     ++     
Sbjct: 82  TDD------RKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSDAGTRTA 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            + AAS AL  +G+P +  V    V  ING+ VL+    ED   +  + + +    + + 
Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKINGEMVLDLNAAEDNNGEADMPIAMIARTNTIT 195

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            ++++   L+++     +      C  + E  
Sbjct: 196 ALQMDGR-LTKEEFERGLKLAVGACHQIYELQ 226


>gi|39933406|ref|NP_945682.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
 gi|192288763|ref|YP_001989368.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
 gi|61215953|sp|Q6NCY8|RNPH_RHOPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736930|sp|B3Q968|RNPH_RHOPT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39647252|emb|CAE25773.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
 gi|192282512|gb|ACE98892.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 100/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  + R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D            G  +   VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAWVALADCLNWMKARNMIKGQVLRDNVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G +  +Q   +    S++  +  +  A++G   +++  
Sbjct: 173 LDLDYAEDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQ 232

Query: 536 SKV 538
              
Sbjct: 233 KMA 235



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 83/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  LER----TRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            + G      V        NG  VL+    ED   +
Sbjct: 125 TRTASITGAWVALADCLNWMKARNMIKGQVLRDNVAAISCGIYNGTPVLDLDYAEDSEAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G    ++ V+  A     S+D  L  +         +++   
Sbjct: 185 TDANFVMTG-DGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQK 233


>gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
 gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
          Length = 252

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 22/251 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R ++      +   GS L   GDT+ I   T+    DE+    L G  + 
Sbjct: 3   RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATV----DEKVPPFLRGKGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y+ LP AT   +      PS R +   RL  RA+  V+   A    T+ +  ++ 
Sbjct: 59  WVTAEYSMLPRATEIRNIRESLKPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A + G+ +AL+DA            +P++  VA +++G+V    D   L D+
Sbjct: 119 QADGGTRTAAITGAFVALVDAFKYLKDNGIIEVIPVNSFVAAVSVGIV----DGEKLLDL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + +ED    +D  V  TD G +  +Q   +    +   +   L  A++G   +++   +V
Sbjct: 175 NFEEDCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQV 234

Query: 539 LSESRLQLGEF 549
           LS+   ++G+ 
Sbjct: 235 LSDVVDEVGKN 245



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 82/227 (36%), Gaps = 29/227 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   D  +     G+    +T  Y     A        +R  
Sbjct: 23  KYAEGSVLIEAGDTKVICTATVDEKVPPFLRGKGQGWVTAEYSMLPRA---TEIRNIRES 79

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            +P+   + I R+I R++R +       E    +  +V+Q D        ++  A  AL+
Sbjct: 80  LKPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVIQADGG--TRTAAITGAFVALV 137

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLM 187
                      +  +P    V    V  ++G+ +L+   +ED +  +D+ V  T    L+
Sbjct: 138 DAFKYLKDNGIIEVIPVNSFVAAVSVGIVDGEKLLDLNFEEDCRAQVDMNVVMTDKGQLV 197

Query: 188 VELEANQ---LSEDVVLDAIIFGHNECKPVIEAISK----LAKMCAK 227
                 +    +   + D +         +I    +    +     K
Sbjct: 198 EVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQVLSDVVDEVGK 244


>gi|262374498|ref|ZP_06067772.1| ribonuclease PH [Acinetobacter junii SH205]
 gi|262310494|gb|EEY91584.1| ribonuclease PH [Acinetobacter junii SH205]
          Length = 238

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  + R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLSNKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGISELIQKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QQA 235



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  RDVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + T     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL------MLSGL-----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A+ AL      +LS       P +G V    V     + +L+   +ED   Q  L
Sbjct: 128 AAITGAAVALVDAMNVLLSNKKIKHDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTDL 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + + +    E    +       +         +I+   + 
Sbjct: 188 NVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGISELIQKQQQA 235


>gi|325570405|ref|ZP_08146182.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325156615|gb|EGC68792.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 450

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 140/357 (39%), Gaps = 47/357 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R ++ Q  + +   GS +   GDT  I   T+    +++    L  T +
Sbjct: 1   MRHDGRKETMLRPVNIQTNVYKHPEGSVVISFGDTTVICSATI----EDRVPPFLRDTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWITAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL                PI + +A I++G++ DG     +
Sbjct: 117 DVVQADGGTRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    +     +    G   N M++  + A    +   
Sbjct: 174 TDLDYQEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN---VIGMGGKVIRGIVEQTGAKVNIDD 589
            E   +  E   ++ E T  +      P + +    V G  G  +R + +      ++++
Sbjct: 234 KEALFLPDEPPYEIPEKTIVIATG--NPGKAKEFKAVFGAAGYDVRTLKDYPSLP-DVEE 290

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            GT    ++ L     AR +               G+ V   D G  V   G R G+
Sbjct: 291 TGTTFEENARLKAETIARIL---------------GRPVLADDSGLKVDALGGRPGV 332



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 92/247 (37%), Gaps = 33/247 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ ++T    +  +G+V+ ++G+T V+ +   +  +           +T  Y     A 
Sbjct: 12  RPVNIQTNVY-KHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  N----TRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG- 172
               S+  A  AL            L+  P +  +    V    +G  V +    ED   
Sbjct: 125 TRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDGTCVTDLDYQEDSSA 184

Query: 173 --SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
              ++L ++ +    + ++    + +     + + +I+G    + +I    +   +  + 
Sbjct: 185 AVDMNLVMTES-GRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEALFLPDEP 243

Query: 229 PIVIDSK 235
           P  I  K
Sbjct: 244 PYEIPEK 250


>gi|254559085|ref|YP_003066180.1| ribonuclease PH [Methylobacterium extorquens DM4]
 gi|254266363|emb|CAX22127.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens DM4]
          Length = 237

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   ++   ++   +  L+ AK G   ++   
Sbjct: 173 LDLDYAEDSAADTDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQ 232

Query: 536 SKVLS 540
            K ++
Sbjct: 233 RKAIA 237



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 86/234 (36%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE   +AR ++G+ L T+G T VL T   +        G     +T  Y     A 
Sbjct: 12  RDVTLER-AVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R +       + +  V  +V+Q D    
Sbjct: 71  HER----TRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+  A  AL            +S  P +  V         GQ VL+    ED    
Sbjct: 125 TRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYAEDSAAD 184

Query: 173 -SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  V+G +  ++ V+   E    +++  L+ +         ++E   K   
Sbjct: 185 TDANFVVTG-KGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|164686704|ref|ZP_02210732.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
 gi|164604094|gb|EDQ97559.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
          Length = 449

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+ + +RD+       +   GS     GDT+ +   ++    +++    L  T   
Sbjct: 3   RIDGREFDQIRDLKITRNYTKYAEGSVFIEMGDTKVLCNASI----EDKVPPFLRNTGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T +        G    R     RL  RAI  V+        T+ I  +
Sbjct: 59  WINAEYSMLPRSTQQRKIRDASRGKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A++D             +P+   V+ I++G+V        L 
Sbjct: 119 VIQADGGTRTASITGAFVAVLDAINKLHKEKAIKHMPVRNFVSAISVGIVNGE----YLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD G    +Q   +    S   +   L+  ++G   +L    
Sbjct: 175 DLCYEEDSNAQVDMNIIMTDKGEFVELQGTGEECPFSRKDLEKLLELGEKGNKMLLKAQR 234

Query: 537 KVLSESRLQL 546
           + L E   ++
Sbjct: 235 EALGEIADEI 244



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 32/245 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT------VNYQERT 67
           R LK+ T    + ++G+V    G+T VL     +  +     F   T        Y    
Sbjct: 13  RDLKI-TRNYTKYAEGSVFIEMGDTKVLCNASIEDKVPP---FLRNTGTGWINAEYSMLP 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
            +  +       R  +       I R+I R+IR +       E    +  +V+Q D    
Sbjct: 69  RSTQQRKIRDASR-GKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWIDCDVIQADGG-- 125

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  A+            +  +P    V    V  +NG+Y+L+   +ED   Q
Sbjct: 126 TRTASITGAFVAVLDAINKLHKEKAIKHMPVRNFVSAISVGIVNGEYLLDLCYEEDSNAQ 185

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
             +++ ++  +   + ++    +   S   +   +  G    K +++A  +     A E 
Sbjct: 186 VDMNIIMT-DKGEFVELQGTGEECPFSRKDLEKLLELGEKGNKMLLKAQREALGEIADEI 244

Query: 230 IVIDS 234
           + +D 
Sbjct: 245 LGVDY 249


>gi|115522381|ref|YP_779292.1| ribonuclease PH [Rhodopseudomonas palustris BisA53]
 gi|115516328|gb|ABJ04312.1| RNAse PH [Rhodopseudomonas palustris BisA53]
          Length = 243

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  +L    +E+    L G  R
Sbjct: 7   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTASL----EERLPPWLKGQGR 62

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  S R +   RL  R++   +   A     + +  
Sbjct: 63  GWVTAEYGMLPRATHERTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDC 122

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPIS-----------KPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D    +              VA I+ G+     +   +
Sbjct: 123 DVLQADGGTRTAAITGAWVALADCLAWMKARNMIKAKVLRDNVAAISCGIY----NGTPV 178

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    S++  +  +  A++G   +++  
Sbjct: 179 LDLDYAEDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQ 238

Query: 536 SKVLS 540
           +  ++
Sbjct: 239 NMAVA 243



 Score = 73.8 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 18  RAVSLERGVV-KYAEGSCLVKFGDTHVLVTASLEERLPPWLKGQGRGWVTAEYGMLPRAT 76

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    + +   + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 77  HE----RTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDCDVLQADGG-- 130

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL            +        V        NG  VL+    ED   +
Sbjct: 131 TRTAAITGAWVALADCLAWMKARNMIKAKVLRDNVAAISCGIYNGTPVLDLDYAEDSEAE 190

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G    ++ V+  A +   S+D  L  +         +++  +    
Sbjct: 191 TDANFVMTG-DGRIIEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQNMAVA 243


>gi|319780511|ref|YP_004139987.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166399|gb|ADV09937.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 238

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R IS + G+ +   GS L   GDT  +   +L    +E+    +  + +
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D                +   VA I+ G+     D   
Sbjct: 117 DVIQADGGTRTASITGGWVALYDCLRWMEARQMASVAKVLKDHVAAISCGI----HDGQP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE      +  AK+G   +++ 
Sbjct: 173 VIDLDYIEDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEEQFADLMGLAKKGIQRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QQMAVA 238



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 85/238 (35%), Gaps = 39/238 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +  E G +++ ++G+ L  +G+T VL T   +  +           +T  Y     + 
Sbjct: 12  RAISFERG-VSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL--- 122
           G+     +RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQADGGTR 126

Query: 123 ------------ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
                       +    + +   AS A +L        V        +GQ V++    ED
Sbjct: 127 TASITGGWVALYDCLRWMEARQMASVAKVLKD-----HVAAISCGIHDGQPVIDLDYIED 181

Query: 171 QG---SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
                  +  ++G +  ++ ++   E    SE+   D +       + ++        
Sbjct: 182 SAAGTDANFVMTG-KGGIVEIQGTAEGEPFSEEQFADLMGLAKKGIQRLVSLQQMAVA 238


>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
 gi|75431903|sp|Q5E8P0|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
          Length = 238

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL D              P+   VA +++G+         +
Sbjct: 117 DVIQADGGTRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVGIYNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A++G   I+ + 
Sbjct: 173 CDLEYVEDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 82/234 (35%), Gaps = 30/234 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L     A  ++G+VL  +G T V+ T   + ++     G+    +T  Y     A 
Sbjct: 12  RPITLTRNFTAH-AEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R         E    V  +V+Q D    
Sbjct: 71  ----HTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS AL            L   P +G V    V   NG+ + +    ++    
Sbjct: 125 TRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYVEDSAAD 184

Query: 174 LDL-FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            D+  V      ++ V+  A +   S   +LD +         +IE        
Sbjct: 185 TDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238


>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 245

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R DGR  + +R +    G      GS L   G+T+ +   +     +E      
Sbjct: 3   MTEAFLRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTAS----AEEGVPRFK 58

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             +        Y  LP AT +        G    R     RL  R++   +  TA    T
Sbjct: 59  KDSGEGWLTAEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENT 118

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           +++  ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G+V    
Sbjct: 119 IQLDCDVLQADGGTRTASITGAYVALADAIGYLKEQGVVPGEPLLAPVAAVSVGIV---- 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D  +  D+  +ED    +D  V  TDSG    +Q   + G      + + L  A++G   
Sbjct: 175 DGRVCLDLPYEEDSRAEVDLNVVMTDSGDFVEVQGTGEHGLFGREQLGLMLDAAEKGCRE 234

Query: 531 ILNEMSKV 538
           +++     
Sbjct: 235 LIDAQKAA 242



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++  G  +  + G+VL  +G T V+ T                   LT  Y     A
Sbjct: 19  RPVRITRGFTSNPA-GSVLVEFGNTRVMCTA-SAEEGVPRFKKDSGEGWLTAEYAMLPAA 76

Query: 70  V-GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSP 126
              ++P   ++   +       ISR++ RS+R     +   +N  Q+  +V+Q D     
Sbjct: 77  THDRMPRESMK--GKVKGRTHEISRLVGRSLRAAVDLTALGENTIQLDCDVLQADGG--T 132

Query: 127 HVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
              S+  A  AL  +           G P   PV    V  ++G+  L+   +ED   + 
Sbjct: 133 RTASITGAYVALADAIGYLKEQGVVPGEPLLAPVAAVSVGIVDGRVCLDLPYEEDSRAEV 192

Query: 173 SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
            L++ ++ + D V  V+          + +   +      C+ +I+A  
Sbjct: 193 DLNVVMTDSGDFV-EVQGTGEHGLFGREQLGLMLDAAEKGCRELIDAQK 240


>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
          Length = 245

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR  + +R I  +VG+L+R  GS     G+ + I  V  G RE   +    
Sbjct: 7   LIKDGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAV-YGPREM--HPRHA 63

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +       YN  P +T +  R G P RR +   ++ R A  PV+ +       + + 
Sbjct: 64  QDAKMAVVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIDVY 122

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ IA+G +       ++ D++  ED+ 
Sbjct: 123 VELLQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGE----MVLDLNAAEDNN 178

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D  +A     + ITA+QMD ++   ++      L+ A      I       
Sbjct: 179 GEADMPIAMIARTNTITALQMDGRM---TQEEFGRGLKLAMGACHQIYELQRAA 229



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 19/214 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K+E G + +++DG+     G   V+A V   R +            +   Y    ++
Sbjct: 23  RPIKIEVGVL-KRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVKFRYNMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
                    R+   P    + IS++   +  P+  +    K    V + ++Q D      
Sbjct: 82  TDD------RKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQSDAG--TR 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              + AAS AL  +G+P +  V    V  I G+ VL+    ED   +  + + +    + 
Sbjct: 134 TAGINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMIARTNT 193

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +  ++++   ++++     +      C  + E  
Sbjct: 194 ITALQMDGR-MTQEEFGRGLKLAMGACHQIYELQ 226


>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
 gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
 gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
          Length = 246

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 13/242 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R DGR  E +R +  QVG+L    GS+L   G T+ +  V  G RE  Q    L
Sbjct: 11  LIRDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAV-YGPREPHQRFYVL 69

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
               R    + Y+  P +T E     APSRREI   ++ R A+ PV+         + + 
Sbjct: 70  --PDRAALRVRYHMAPFSTDERKS-PAPSRREIELSKVVREALEPVVLAEEFPRTVIDVF 126

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ ++DG +  A V  +SLAL DAG+P+   V G+A+G ++     +++ D+   ED  
Sbjct: 127 LEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQ----GVLVVDVDELEDMY 182

Query: 487 GHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           G  D  VA       IT +Q++  + G        AL  A R    ++    + + +S L
Sbjct: 183 GEADMPVAAAPDIGEITLLQLNGVLTG---EEFRTALAMALRAIDRVVEMEKEAIRKSYL 239

Query: 545 QL 546
           ++
Sbjct: 240 EV 241



 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 17/219 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP++++ G I   +DG+ L  +G T VLA V   R          D   L V Y    ++
Sbjct: 27  RPVRMQVG-ILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALRVRYHMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S+++  ++ P  L  +  +    V + V+Q D      
Sbjct: 86  TDE------RKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQD-AV 185
             ++ AAS AL  +G+P    V G  V  I G  V++   L++  G  D+ V+   D   
Sbjct: 138 TAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAPDIGE 197

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + +      L+ +    A+         V+E   +  + 
Sbjct: 198 ITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRK 236


>gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
 gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
          Length = 432

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 26/268 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++  R ++ +   L+   GS L   GDT+ I   T+ T+        L G   
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETK----VPRFLKGMGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  S R +   RL  R++   +   A    ++ +  
Sbjct: 57  GWVHAEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSCIDLEALGERSITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L+D+G     PI + VA I++G+++DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIQTLLDSGELALSPIKENVAAISVGILEDGQ---AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED   ++D  +  T  G    +Q   +    S   + + L+  K+G   ++   
Sbjct: 174 LDLNYLEDSAANVDMNLVMTSGGQFVEIQGTGEEATFSSEQLAVLLEFGKKGIKELIQVQ 233

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQI 563
               +++   L      +    IP D+I
Sbjct: 234 DNAFNQA---LSLKKDVMSYPVIPKDEI 258



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 95/282 (33%), Gaps = 34/282 (12%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYA 69
            R + +ET  + +  +G+VL ++G+T V+     +  +     G     +   Y     A
Sbjct: 11  NRLVTIETNYL-KHPEGSVLVSFGDTKVICNATIETKVPRFLKGMGSGWVHAEYSMLPRA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
                      + + +   + I R+I RS+R         E    V  +V+Q D      
Sbjct: 70  TN-TRNIREAAKGKLSGRTMEIQRLIARSLRSCIDLEALGERSITVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALML-------SG----LPFEGPVVGAQVD-YINGQYVLNPRLDEDQG--- 172
             S+  A  AL L       SG     P +  V    V    +GQ VL+    ED     
Sbjct: 127 TASITGAFVALKLAIQTLLDSGELALSPIKENVAAISVGILEDGQAVLDLNYLEDSAANV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS-------KLAK 223
            ++L ++ +    + ++    + +   + +   + FG    K +I+           L K
Sbjct: 187 DMNLVMT-SGGQFVEIQGTGEEATFSSEQLAVLLEFGKKGIKELIQVQDNAFNQALSLKK 245

Query: 224 MCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRC 265
                P++   +              E L        K +R 
Sbjct: 246 DVMSYPVIPKDEILIATNNAGKAKEFEALFAKKGFKVKTLRD 287


>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
          Length = 247

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++ +  R DGR  + +R I  +VG+L+R  GS     G+ + I  V  G RE   +    
Sbjct: 7   LIKEGKRSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAV-YGPREM--HPRHA 63

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +       YN  P +T +  R G P RR +   ++ R A  PV+ +       + + 
Sbjct: 64  QDAKMAVIKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKMGIEVY 122

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ IA+G +       ++ D++  ED+ 
Sbjct: 123 VELLQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVGKINGE----VVLDLNAAEDNN 178

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D  +A     + ITA+QMD ++   ++      L+ A      I       
Sbjct: 179 GEADMPIAMIARTNTITALQMDGRM---TQEEFGRGLKLAMGACHQIYELQRAA 229



 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 83/212 (39%), Gaps = 15/212 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K+E G + +++DG+     G   V+A V   R +            +   Y    ++
Sbjct: 23  RPIKIEVGVL-KRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIKFRYNMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                    R+   P    + IS++   +  P+  +    +  + + V     ++     
Sbjct: 82  TDD------RKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSDAGTRTA 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            + AAS AL  +G+P +  V    V  ING+ VL+    ED   +  + + +    + + 
Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKINGEVVLDLNAAEDNNGEADMPIAMIARTNTIT 195

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            ++++   ++++     +      C  + E  
Sbjct: 196 ALQMDGR-MTQEEFGRGLKLAMGACHQIYELQ 226


>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
 gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
           Hrk 5]
          Length = 245

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 13/247 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
             ++ +   R+DGR  + +R +  + G+L+   GS+    G+ + +  V  G RE     
Sbjct: 7   ERLIDENGRRVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAV-YGPREPMPRH 65

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           ++L    R      Y+ LP +  E      PSRREI   ++ R A+ P +        ++
Sbjct: 66  EAL--PDRAILKCRYSMLPFSVAERKS-PQPSRREIELSKVIREALAPAVFLNEYPRTSI 122

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +   I E+DG +  A++   S+AL DAG+ +   VA IA+G + +    +++ DI+G E
Sbjct: 123 EVYIHILEADGGTRTASIIAGSVALADAGIAMRDLVAAIAVGKIGN----VLVLDINGIE 178

Query: 484 DHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           D  G  D  +A       IT +Q D      +   +  AL+ A++    I  E  + L  
Sbjct: 179 DQYGDGDMPIAMMPQRGEITLLQADGV---FTPQEIEEALRLAQKAFQKIYAEQVRALKT 235

Query: 542 SRLQLGE 548
               + E
Sbjct: 236 KYESVKE 242



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 89/218 (40%), Gaps = 17/218 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RPL++E G + + +DG+     G   VLA V   R      +  P    L   Y    ++
Sbjct: 26  RPLRVEAGVL-KNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILKCRYSMLPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+  +P+  EI +S++I  ++ P    ++  +   +V I++++ D      
Sbjct: 85  VAE------RKSPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILEADGG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVS-GTQDAV 185
             S++A S AL  +G+     V    V  I    VL+   +++  G  D+ ++   Q   
Sbjct: 137 TASIIAGSVALADAGIAMRDLVAAIAVGKIGNVLVLDINGIEDQYGDGDMPIAMMPQRGE 196

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           + +       +   + +A+       + +     +  K
Sbjct: 197 ITLLQADGVFTPQEIEEALRLAQKAFQKIYAEQVRALK 234


>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
 gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
          Length = 242

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 13/239 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+ GR  E +R I   VG+L+R  GS  F  GD +A+  V  G RE   +    
Sbjct: 8   LIKDGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAV-YGPREM--HPRHF 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +       YN  P +  +  R G P RR      ++R+A+ PV+ +       + + 
Sbjct: 65  QNAKMAVVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ +A+G +    D  ++ D+   ED+ 
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI----DGEVVLDLDAKEDNF 179

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           G  D  +A     + IT +QMD   G + +      L+ A  G   I       L E  
Sbjct: 180 GEADMPIAMIARTNTITLLQMD---GRLKKEEFERGLKIAMSGCRKIYELQRAALVEKY 235



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 91/222 (40%), Gaps = 16/222 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K++ G + +++DG+     G+   LA V   R +            +   Y    ++
Sbjct: 24  RPIKIDVGVL-KRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAVVKYRYNMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           V        R+   P      IS +  +++ P+  +    +T + + V     ++     
Sbjct: 83  VDD------RKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTA 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            + AAS AL  +G+P    V    +  I+G+ VL+    ED   +  + + +    + + 
Sbjct: 137 GINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADMPIAMIARTNTIT 196

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAI-SKLAKMCAK 227
           +++++   L ++     +    + C+ + E   + L +  +K
Sbjct: 197 LLQMDGR-LKKEEFERGLKIAMSGCRKIYELQRAALVEKYSK 237


>gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
 gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EETVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+S+A+ D              P+   VA +++G++ +     IL
Sbjct: 117 DVIQADGGTRTAAISGASVAMADAFAHLVAKGKLKANPMKSHVAAVSVGILGEN----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A++G + I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEETVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQG 172
               ++  AS A+            L   P +  V    V  + G+ +L     +++   
Sbjct: 125 TRTAAISGASVAMADAFAHLVAKGKLKANPMKSHVAAVSVGIL-GENILCDLEYVEDSAA 183

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             D+ V  T++  ++ ++   E    S + +L  +         ++ A       
Sbjct: 184 DTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQKAALAE 238


>gi|149430580|ref|XP_001515504.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus]
          Length = 245

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 8/233 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E  + + 
Sbjct: 5   ELLSDEGYRVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVV-YGPHEM-RGLR 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      ++    +TGE  R     R+     +  ++     +         + 
Sbjct: 63  SRALPDRALVNCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAILTQLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I ++DG +  A V  ++LA++DAG+P+   V   + G V+D      L+D+S  E+
Sbjct: 123 IYVQILQADGGNYAACVNAATLAVLDAGIPLRDFVCASSAGFVEDTP----LADLSYVEE 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
             G     +A       IT + +D ++       ++ A   A R    +L+ +
Sbjct: 179 AAGGPQVALALLPGSGQITLLGLDARVHEDHLERVLEAATAAARDVHTVLDRV 231



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 82/221 (37%), Gaps = 11/221 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-GQDFFPLTVNYQERTYAVGK 72
           R ++   G  A Q+DG+     G T  LA V     ++       P       + +++  
Sbjct: 23  RKIEARMGVFA-QADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALVNCQ-FSMAT 80

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVS 130
              G  +R          +S+ + ++           +++  + + ++Q D  +      
Sbjct: 81  FSTGERKRRPHGDRKATEMSQHLQQTFEDAILTQLYPRSQIDIYVQILQADGGNYA--AC 138

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLM 187
           + AA+ A++ +G+P    V  +   ++    + +    E+      + L +      + +
Sbjct: 139 VNAATLAVLDAGIPLRDFVCASSAGFVEDTPLADLSYVEEAAGGPQVALALLPGSGQITL 198

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + L+A  + ED +   +       + V   + ++ +   ++
Sbjct: 199 LGLDAR-VHEDHLERVLEAATAAARDVHTVLDRVVRRHVRQ 238


>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
          Length = 247

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+DGR  + +R I  +VG+L+R  GS     GD + I  V  G RE   +    
Sbjct: 7   LIKDGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAV-YGPREM--HPRHA 63

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +       YN  P +T +  R G P RR +   ++ R A  PV+ +       + + 
Sbjct: 64  QDAKMAVVKFRYNMAPFSTDDRKRPG-PDRRSVEISKVCREAFDPVIMRELYPKTGIEVY 122

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ IA+G +       ++ D++  ED+ 
Sbjct: 123 VELLQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGE----MVLDLNAAEDNN 178

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D  +A     + ITA+QMD   G +++      L+ A      I       
Sbjct: 179 GEADMPIAMIARTNTITALQMD---GRLTKEEFGRGLKLAMGACHQIYELQRTA 229



 Score =  116 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 84/212 (39%), Gaps = 15/212 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K+E G + +++DG+     G+  V+A V   R +            +   Y    ++
Sbjct: 23  RPIKIEVGVL-KRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVKFRYNMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                    R+   P    + IS++   +  P+  +    +T + + V     ++     
Sbjct: 82  TDD------RKRPGPDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQSDAGTRTA 135

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            + AAS AL  +G+P +  V    V  I G+ VL+    ED   +  + + +    + + 
Sbjct: 136 GINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMIARTNTIT 195

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            ++++   L+++     +      C  + E  
Sbjct: 196 ALQMDGR-LTKEEFGRGLKLAMGACHQIYELQ 226


>gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
 gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
          Length = 238

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAIKSLIDSGKLKKNPMKGHVAAVSVGIVGAE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A +G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 30/234 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+     A  ++G+VL  +G T VL     + ++     GQ    +T  Y     A 
Sbjct: 12  RPIKITRNYTAY-AEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  AS A+         SG     P +G V    V  +  + + +    ++    
Sbjct: 125 TRTASISGASVAMADAIKSLIDSGKLKKNPMKGHVAAVSVGIVGAEALCDLEYVEDSAAD 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V  T+D  ++ ++   E    S + ++  +   +     ++EA       
Sbjct: 185 TDMNVVMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEAQKAALAD 238


>gi|92115783|ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14]
 gi|122418904|sp|Q1QRU5|RNPH_NITHX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91798677|gb|ABE61052.1| RNAse PH [Nitrobacter hamburgensis X14]
          Length = 237

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS +   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-GVP----------ISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D  G            +   VA ++ G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAWVALADCIGWMKARNMIKTSVLRDNVAAVSCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    S++  +  L  AK+G   +++  
Sbjct: 173 LDLDYAEDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KMAVA 237



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ +  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  LER----TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLSGLPFEGP------------VVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL    + +               V        NG  VL+    ED   
Sbjct: 125 TRTASITGAWVALADC-IGWMKARNMIKTSVLRDNVAAVSCGIYNGTPVLDLDYAEDSEA 183

Query: 171 QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
               +  ++G    ++ V+  A +   S+D  L  +         +++       
Sbjct: 184 DTDANFVMTG-DGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA 237


>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
          Length = 246

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 7/246 (2%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  E      
Sbjct: 5   ELLSDQGFRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATV-YGPHEITGG-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   +      Y+    +TGE        RR        RR     +         + 
Sbjct: 63  SKALHDKVLLNCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ +SDG +  A V  ++LA++DAG+P+   V      L++D      + DIS  E+
Sbjct: 123 IYVQVLQSDGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTP----VVDISYLEE 178

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            +G  +  VA        + +  +   +  + +   L    +G   +   + + + E   
Sbjct: 179 SVGSPEMVVALLPKSE-QIVLFQQNSRLHVDNLEKVLDMGIKGCTDVYGILDQSVREHVT 237

Query: 545 QLGEFT 550
           ++    
Sbjct: 238 EVSNLM 243



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 19/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTY 68
           R ++   G   RQ+DG+     G T VLATV     +  G      D   L   Y   T+
Sbjct: 23  RKIRCRMGVF-RQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVLLNCQYSMATF 81

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           + G+      +   +       +S  + R+ +         +++  + + V+Q D  +  
Sbjct: 82  STGE-----RKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQSDGGNY- 135

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS--GTQD 183
               + AA+ A++ +G+P    V       +    V++    +E  GS ++ V+     +
Sbjct: 136 -CACVNAATLAVIDAGIPMRDYVCACTSSLLEDTPVVDISYLEESVGSPEMVVALLPKSE 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            +++ +  +  L  D +   +  G   C  V   + +  +    E
Sbjct: 195 QIVLFQQNSR-LHVDNLEKVLDMGIKGCTDVYGILDQSVREHVTE 238


>gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130]
 gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130]
          Length = 239

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  + +R ++ + G  +   GS L   GDT  +   +L    +E+    L G  +
Sbjct: 4   KRPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASL----EERVPPWLRGAGK 59

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R     G  S R     RL  R++  V+   A     + +  
Sbjct: 60  GWVTAEYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDC 119

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL           M  G  +   VA I+ G+     +   +
Sbjct: 120 DVIQADGGTRTASITGAYVALKECLDWMQARSMIGGDVLIDNVAAISCGIY----EGTPV 175

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D     T   GI  +Q   +    S       +  A +G   +++  
Sbjct: 176 LDLDYDEDSEADTDANFVMTGKGGIVEIQGTAEAAPFSREEFSALMDLASKGIGELVDLQ 235

Query: 536 S 536
           +
Sbjct: 236 N 236



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E G  ++ ++G+ L  +G+T VL T   +  +     G     +T  Y     + 
Sbjct: 15  RAVTIERG-FSKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGAGKGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G    G +RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 74  G----GRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL           M+ G      V         G  VL+   DED    
Sbjct: 128 TRTASITGAYVALKECLDWMQARSMIGGDVLIDNVAAISCGIYEGTPVLDLDYDEDSEAD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G +  ++ ++  A     S +     +         +++  +
Sbjct: 188 TDANFVMTG-KGGIVEIQGTAEAAPFSREEFSALMDLASKGIGELVDLQN 236


>gi|257866170|ref|ZP_05645823.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257872500|ref|ZP_05652153.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
 gi|257800104|gb|EEV29156.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257806664|gb|EEV35486.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
          Length = 450

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 139/357 (38%), Gaps = 47/357 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +  Q  + +   GS +   GDT  I   T+    +++    L  T +
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATI----EDRVPPFLRDTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL                PI + +A I++G++ DG     +
Sbjct: 117 DVVQADGGTRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    +     +    G   N M++  + A    +   
Sbjct: 174 TDLDYQEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN---VIGMGGKVIRGIVEQTGAKVNIDD 589
            E   +  E   ++ E T  +      P + +    V G  G  +R + +      ++++
Sbjct: 234 KEALFLPDEPPYEIPEKTIVIATG--NPGKAKEFKAVFGAAGYDVRTLKDYPSLP-DVEE 290

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            GT    ++ L     AR +               G+ V   D G  V   G R G+
Sbjct: 291 TGTTFEENARLKAETIARIL---------------GRPVLADDSGLKVDALGGRPGV 332



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 33/247 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K++T    +  +G+V+ ++G+T V+ +   +  +           +T  Y     A 
Sbjct: 12  RPVKIQTNVY-KHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  N----TRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG- 172
               S+  A  AL            L+  P +  +    V    +G  V +    ED   
Sbjct: 125 TRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDGTCVTDLDYQEDSSA 184

Query: 173 --SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
              ++L ++ +    + ++    + +     + + +I+G    + +I    +   +  + 
Sbjct: 185 AVDMNLVMTES-GRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEALFLPDEP 243

Query: 229 PIVIDSK 235
           P  I  K
Sbjct: 244 PYEIPEK 250


>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
 gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
          Length = 246

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 8/232 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR S  +R + A++G+  +  GS+   +G+T+A+  V  G  E  +   
Sbjct: 5   EIISDQGYRIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATV-YGPHEVRKG-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 R      ++    +TGE        RR        R+    V+         + 
Sbjct: 63  GKIQHDRAVVNCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIVTELFPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  +I ++DG +  A V  ++LA++DAG+P+   V     G ++D      L DIS  E+
Sbjct: 123 IYVQILQADGGNYCACVNAATLAVIDAGIPMKDYVCACTAGFIQDSP----LLDISYVEE 178

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             G     VA       I  ++M+ ++   +   ++    Q  +    +L+ 
Sbjct: 179 SAGAPFLTVAMMPKSEQIVLLEMNSRLHADNMEKVLDLATQGCKDVFAVLDR 230



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 81/209 (38%), Gaps = 18/209 (8%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTYAVGKIPGGYLRR 80
           Q+DG+     G T  LATV     ++ G      D   +   +   T++ G+      + 
Sbjct: 34  QADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVVNCQFSMATFSTGE-----RKS 88

Query: 81  ESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
             +       +S  + ++   +       +++  + + ++Q D  +      + AA+ A+
Sbjct: 89  RPKGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQILQADGGNY--CACVNAATLAV 146

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS---LDLFVSGTQDAVLMVELEANQL 195
           + +G+P +  V      +I    +L+    E+      L + +    + ++++E+ +  L
Sbjct: 147 IDAGIPMKDYVCACTAGFIQDSPLLDISYVEESAGAPFLTVAMMPKSEQIVLLEMNSR-L 205

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             D +   +      CK V   + +  + 
Sbjct: 206 HADNMEKVLDLATQGCKDVFAVLDRHVRD 234


>gi|316931691|ref|YP_004106673.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
 gi|315599405|gb|ADU41940.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  + R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPIS-----------KPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D    +              VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAWVALADCLNWMKARNMIKTQVLRDNVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G +  +Q   +    S++  +  +  A++G   +++  
Sbjct: 173 LDLDYAEDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQ 232

Query: 536 SKV 538
              
Sbjct: 233 KMA 235



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  LER----TRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +        V        NG  VL+    ED   +
Sbjct: 125 TRTASITGAWVALADCLNWMKARNMIKTQVLRDNVAAISCGIYNGTPVLDLDYAEDSEAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G    ++ V+  A     S+D  L  +         +++   
Sbjct: 185 TDANFVMTG-DGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQK 233


>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
          Length = 242

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 13/239 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ++    R+ GR  E +R I  +VG+L+R  GS  F  G+ + I  V  G RE   +    
Sbjct: 8   LIKDGKRLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGV-YGPREM--HPRHF 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +       YN  P +  +  R G P RR      ++R+A+ PV+ +       + + 
Sbjct: 65  QNAKMAVVKYRYNMAPFSVDDRKRPG-PDRRSQEISMVSRKALDPVILRELYPKTAIEVY 123

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ +SD  +  A +  +S+AL DAG+P+   V+ +A+G +    D  ++ D+   ED+ 
Sbjct: 124 VEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKI----DGEVVLDLDAKEDNF 179

Query: 487 GHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           G  D  +A     + IT +QMD   G + +      L+ A  G   I       L E  
Sbjct: 180 GEADMPIAMIARTNTITLLQMD---GRLKKEEFERGLKLAMDGSRKIYELQKAALVEKY 235



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 88/221 (39%), Gaps = 17/221 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K+E G + +++DG+     G   V+A V   R +            +   Y    ++
Sbjct: 24  RPIKIEVGVL-KRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAVVKYRYNMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
           V        R+   P      IS +  +++ P+  +    +T + + V     ++     
Sbjct: 83  VDD------RKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAGTRTA 136

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            + AAS AL  +G+P    V    +  I+G+ VL+    ED   +  + + +    + + 
Sbjct: 137 GINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADMPIAMIARTNTIT 196

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +++++   L ++     +    +  + + E     A +  K
Sbjct: 197 LLQMDGR-LKKEEFERGLKLAMDGSRKIYELQK--AALVEK 234


>gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3]
          Length = 256

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 104/253 (41%), Gaps = 26/253 (10%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +     R  GR ++ +RDI    G  +   GS L   GDT+ +   T+    +      L
Sbjct: 12  IKLNFTRPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATV----ERGVPRFL 67

Query: 367 SGTQRNDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G+        Y  LP AT    G  +  G    R +   RL  R++   L        T
Sbjct: 68  RGSGSGWVTAEYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENT 127

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKD 469
           + +  ++ ++DG +  A++ G+ +A++D              G P+ + +A I++G+ KD
Sbjct: 128 ITLDCDVLQADGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKD 187

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
                 + D+  DED     D  V  T D G   +Q   +    +++ M+  L  A++G 
Sbjct: 188 EP----VLDLDYDEDSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGI 243

Query: 529 LHILNEMSKVLSE 541
             I    +  L++
Sbjct: 244 TEIAALQTAALAD 256



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+  G   + ++G+VL  +G+T VL T   +R +     G     +T  Y     A 
Sbjct: 28  RDIKITRG-FTKHAEGSVLIEFGDTRVLCTATVERGVPRFLRGSGSGWVTAEYGMLPRAT 86

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
               G    R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 87  HSRNGREAAR-GKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLDCDVLQADGG--TRT 143

Query: 129 VSMVAASAAL-------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  A  A+              + G P    +    V     + VL+   DED   + 
Sbjct: 144 ASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEPVLDLDYDEDSKAET 203

Query: 173 SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            +++ ++     + +    E +  ++D ++  +         +    
Sbjct: 204 DMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIAALQ 250


>gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
 gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
          Length = 272

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G  +
Sbjct: 36  MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQNK 91

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG   R     G  S R     RL  R++  V+   A     + +  
Sbjct: 92  GWVTAEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISVDC 151

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D            G  ++  +A I+ G+ +       +
Sbjct: 152 DVIQADGGTRTAAITGAWVALRDCVEWMKARDMVSGDVLTDHIAAISCGIYESTP----V 207

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D     T S GI  +Q   +    SE+     +  AK G   +++  
Sbjct: 208 LDLDYDEDSTAETDANFVMTGSGGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVDLQ 267

Query: 536 SKV 538
              
Sbjct: 268 KMA 270



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G +++ ++G+ L  +G+T VL T   +  +     GQ+   +T  Y     A 
Sbjct: 47  RAVTLERG-VSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNKGWVTAEYGMLPRAT 105

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 106 G----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISVDCDVIQADGG-- 159

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL           M+SG      +            VL+   DED   +
Sbjct: 160 TRTAAITGAWVALRDCVEWMKARDMVSGDVLTDHIAAISCGIYESTPVLDLDYDEDSTAE 219

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   ++ ++   E    SED     +       K +++   
Sbjct: 220 TDANFVMTGS-GGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVDLQK 268


>gi|325981263|ref|YP_004293665.1| ribonuclease PH [Nitrosomonas sp. AL212]
 gi|325530782|gb|ADZ25503.1| ribonuclease PH [Nitrosomonas sp. AL212]
          Length = 240

 Score =  163 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R ++      +   GS L   GDT+ I   ++     EQ    L G  +
Sbjct: 2   IRSHQRTPAQIRPVNIIRHYTKHADGSVLIECGDTKVICTASI----SEQVPPFLRGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R +   RL  RA+   +        T+++  
Sbjct: 58  GWLTAEYGMLPGSTNTRMQREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              PI+  VA I++G+       + +
Sbjct: 118 DVIQADGGTRTASITGAFVALHDAIEKLIYQQLIETSPITDHVAAISVGI----HQGVAM 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T + GI  +Q   +    +   +   L  A++G   ++   
Sbjct: 174 LDLDYVEDSSCDTDMNVVMTGNLGIIEVQGTAEGNAFNRKELDTMLDLAQQGIQELITIQ 233

Query: 536 SKV 538
            KV
Sbjct: 234 RKV 236



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRR- 80
           + +DG+VL   G+T V+ T      +     GQ    LT  Y       G +PG    R 
Sbjct: 23  KHADGSVLIECGDTKVICTASISEQVPPFLRGQGQGWLTAEY-------GMLPGSTNTRM 75

Query: 81  -----ESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
                + + +   + I R+I R++R      K  +   Q+  +V+Q D        S+  
Sbjct: 76  QREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQLDCDVIQADGG--TRTASITG 133

Query: 134 ASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVS 179
           A  AL            +   P    V    V    G  +L+    ED      +++ ++
Sbjct: 134 AFVALHDAIEKLIYQQLIETSPITDHVAAISVGIHQGVAMLDLDYVEDSSCDTDMNVVMT 193

Query: 180 GTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           G    + +    E N  +   +   +       + +I    K+
Sbjct: 194 GNLGIIEVQGTAEGNAFNRKELDTMLDLAQQGIQELITIQRKV 236


>gi|49082078|gb|AAT50439.1| PA5334 [synthetic construct]
          Length = 240

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++     G    R +   RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+D            G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  TD  G   +Q   +        +   L+ A++G   +     
Sbjct: 175 DLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQR 234

Query: 537 KVLSE 541
             L+E
Sbjct: 235 AALAE 239



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RPIRI-TRHYTKHAEGSVLVEFGDTRVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A+ AL            L G P +  V    V    G  VL+    ED   +  L
Sbjct: 129 ASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++      + V+  A         +   +       + + E        
Sbjct: 189 NVVMT-DAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239


>gi|152978104|ref|YP_001343733.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
 gi|171472953|sp|A6VLF1|RNPH_ACTSZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839827|gb|ABR73798.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
          Length = 238

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R     R I       +   GS L   GDT+ +   T+    DE     L G  +
Sbjct: 1   MRPNNRAINQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATV----DESVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGACVALIDAVNGLVDNGTLTVSPLKGLVAAISVGIV----DGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 RAALAD 238



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGDTKVLCTATVDESVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL   ++GL         P +G V    V  ++G  V +    ED   +
Sbjct: 125 TRTASITGACVALIDAVNGLVDNGTLTVSPLKGLVAAISVGIVDGTPVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
             +++ +      ++ V+   E    S + +L  +      CK + EA 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEAQ 232


>gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101]
 gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101]
          Length = 248

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R +       +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASI----EEKVPPFLKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN +P +T    +          R +   RL  RA+   +   A    T+ I  
Sbjct: 57  GWITAEYNMIPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ GS +AL+DA             PI   V+ +++G+V +      +
Sbjct: 117 DVLQADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSIGIVGEEK----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +EDH+  +D  V   + G    +Q   +IG  S   +   L  A++G   ++   
Sbjct: 173 LDLCYEEDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KNA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RPVKI-TRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWITAEYNMIPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                  + +  +     + I R+I R++R         E    +  +V+Q D       
Sbjct: 71  QSRKQRDINK-LKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLS------GLPFEGP-----VVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S+  +  AL+ +        PF        V    +  +  + VL+   +ED    +D+
Sbjct: 128 TSITGSFVALVDAVNKLHQKKPFNVYPIRHFVSAVSIGIVGEEKVLDLCYEEDHVAKVDM 187

Query: 177 FVSGTQDAVLMVELEANQL---SEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V   ++   +      ++   S   + + +       K +I+A     K
Sbjct: 188 NVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQAQKNALK 237


>gi|163849851|ref|YP_001637894.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240137077|ref|YP_002961546.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
 gi|226736915|sp|A9VZR7|RNPH_METEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163661456|gb|ABY28823.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240007043|gb|ACS38269.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
          Length = 237

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   ++   ++   +  L+ AK G   ++   
Sbjct: 173 LDLDYAEDSAAETDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQ 232

Query: 536 SKVLS 540
            K ++
Sbjct: 233 RKAIA 237



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE   +AR ++G+ L T+G T VL T   +        G     +T  Y     A 
Sbjct: 12  RDVTLER-AVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R +       + +  V  +V+Q D    
Sbjct: 71  HER----TRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +S  P +  V         GQ VL+    ED   +
Sbjct: 125 TRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYAEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  V+G +  ++ V+   E    +++  L+ +         ++E   K   
Sbjct: 185 TDANFVVTG-KGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|95929460|ref|ZP_01312203.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
 gi|95134576|gb|EAT16232.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
          Length = 240

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R ++ Q G  +   GS L   GDT  +   T+    +E     + G  R
Sbjct: 3   IRADQRQPDQLRPVTFQRGYTRYAEGSVLVSFGDTVVLCNATV----EESVPPFMRGEGR 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R     RL  RA+  V+   A    T+R+  
Sbjct: 59  GWVTAEYAMLPRATHSRNSREAARGKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL +A             P+   +A I++G+V    D   L
Sbjct: 119 DVLQADGGTRTASITGAYVALAEAVNGLLRDGVLTVSPLKDSLAAISVGIV----DGQPL 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    +   +      A +G   +    
Sbjct: 175 LDLNYGEDSKADVDMNIVMTGSGAFVEVQGTAEAEPFTAQQLDAMRALAMKGCAELAGMQ 234

Query: 536 SKV 538
              
Sbjct: 235 RAA 237



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 24/200 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  + G   R ++G+VL ++G+TVVL     + S+     G+    +T  Y     A 
Sbjct: 14  RPVTFQRG-YTRYAEGSVLVSFGDTVVLCNATVEESVPPFMRGEGRGWVTAEYAMLPRAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                    R  +       I R+I R++R +       E   ++  +V+Q D       
Sbjct: 73  HSRNSREAAR-GKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLDCDVLQADGG--TRT 129

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL   ++GL         P +  +    V  ++GQ +L+    ED      +
Sbjct: 130 ASITGAYVALAEAVNGLLRDGVLTVSPLKDSLAAISVGIVDGQPLLDLNYGEDSKADVDM 189

Query: 175 DLFVSGTQDAVLMVELEANQ 194
           ++ ++G+  A + V+  A  
Sbjct: 190 NIVMTGS-GAFVEVQGTAEA 208


>gi|220924628|ref|YP_002499930.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
 gi|254808593|sp|B8IFR7|RNPH_METNO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219949235|gb|ACL59627.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
          Length = 237

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  E +R ++ + G+ +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASL----EERGPSWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V+   A     + I  
Sbjct: 57  GWITAEYAMLPRATHERNRREVNAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL +              P+   VA ++ G+         +
Sbjct: 117 DVLQADGGTRTASITGAWVALHECFTWMRSRSIISVDPMRDHVAAVSCGI----HKGTPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T S GI  +Q   ++   SE   +  L+ AK G   ++   
Sbjct: 173 LDLDYAEDSAAETDANFVITGSGGIVEVQGTAEVTPFSEEEFLGLLRLAKSGVAQLVALQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 32/233 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + LE G +AR ++G+ L T+GET VL T   +        G     +T  Y     A 
Sbjct: 12  RKVTLERG-VARYAEGSCLVTFGETRVLCTASLEERGPSWLRGSGKGWITAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R + +     E Q++   +V+Q D    
Sbjct: 71  HER----NRREVNAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +S  P    V         G  +L+    ED   +
Sbjct: 125 TRTASITGAWVALHECFTWMRSRSIISVDPMRDHVAAVSCGIHKGTPILDLDYAEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLA 222
              +  ++G+   ++ V+  A     SE+  L  +    +    ++    +  
Sbjct: 185 TDANFVITGS-GGIVEVQGTAEVTPFSEEEFLGLLRLAKSGVAQLVALQKQAV 236


>gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469]
 gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469]
          Length = 253

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 22/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R  + +R ++ +  L++   GS L   GDT+ +   T+    +E        ++  
Sbjct: 17  RSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATI----EEGVPAWRRASRAG 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T + ++    +R  R +   RL  R++  V+       YT+ +  ++ 
Sbjct: 73  WVTAEYAMLPASTNQRTKRERANRKGRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVL 132

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL D           + +P++  VA I+MG+V    D  +L D+
Sbjct: 133 QADGGTRTASITGAWVALHDALFSLVEKDVLSRLPLTGQVAAISMGVV----DGQVLLDL 188

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  + GT+SG I  +Q   + G      +   L   + G  H++   ++V
Sbjct: 189 DYPEDSHADIDMNLVGTESGQIIEVQGTGEGGPFDREKLNQLLDVGQAGIAHLVELQNQV 248

Query: 539 L 539
            
Sbjct: 249 T 249



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 26/228 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ LE   + + +DG+ L ++G+T VL     +  +   +       +T  Y     + 
Sbjct: 27  RPVTLERNLM-KNADGSCLVSFGDTRVLCAATIEEGVPAWRRASRAGWVTAEYAMLPAST 85

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +      R  +      + I R+I RS+R +       E  +    +V+Q D       
Sbjct: 86  NQ---RTKRERANRKGRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQADGG--TRT 140

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            LS LP  G V    +  ++GQ +L+    ++    +D+
Sbjct: 141 ASITGAWVALHDALFSLVEKDVLSRLPLTGQVAAISMGVVDGQVLLDLDYPEDSHADIDM 200

Query: 177 FVSGTQDA-VLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            + GT+   ++ V+   E      + +   +  G      ++E  +++
Sbjct: 201 NLVGTESGQIIEVQGTGEGGPFDREKLNQLLDVGQAGIAHLVELQNQV 248


>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
 gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
          Length = 243

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 13/240 (5%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            +   R D R  + +R +  + G+L+R  GS+    G  + +  V  G R  E +V  L 
Sbjct: 14  TETSGRADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAV-YGPR--ELFVRRLM 70

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
              +      YN  P +  +  R G P RR +   +LA +A+ P +        T+ +  
Sbjct: 71  QPNKAVLRCKYNMAPFSVDDRKRPG-PDRRSVEISKLASQALTPAVFLEKFPRSTIDVFI 129

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E++G +  A +  +S+AL DAG+P+   V   A G      D  ++ D+S  ED  G
Sbjct: 130 EVIEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGK----SDGKVILDLSEVEDKEG 185

Query: 488 HMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
             D  +A       IT +QMD   G ++E     AL  A  G   I  +    +      
Sbjct: 186 QADVPIAIMPRTGEITLLQMD---GNLTEEEFEQALDLAINGCKIISEKQKAAIKNRYGD 242



 Score =  111 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+E G + R +DG+     G   VLA V   R L   +   P    L   Y    ++
Sbjct: 29  RKMKIEAGVLER-ADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLRCKYNMAPFS 87

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V        R+   P    + IS++  +++ P     K  ++   V I V++   E    
Sbjct: 88  VDD------RKRPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEA--EGGTR 139

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS--GTQDA 184
              + AAS AL  +G+P    VV       +G+ +L+   +++ +G  D+ ++       
Sbjct: 140 CAGITAASVALADAGIPMRDMVVACAAGKSDGKVILDLSEVEDKEGQADVPIAIMPRTGE 199

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           + +++++ N L+E+    A+    N CK + E      K
Sbjct: 200 ITLLQMDGN-LTEEEFEQALDLAINGCKIISEKQKAAIK 237


>gi|218528482|ref|YP_002419298.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
 gi|254808592|sp|B7L092|RNPH_METC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218520785|gb|ACK81370.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
          Length = 237

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   ++   ++   +  L+ AK G   ++   
Sbjct: 173 LDLDYAEDSAAETDANFVVTGKGGIVEVQGTAELEPFTDEQFLELLRLAKGGVAGLVELQ 232

Query: 536 SKVLS 540
            K ++
Sbjct: 233 RKAIA 237



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE   +AR ++G+ L T+G T VL T   +        G     +T  Y     A 
Sbjct: 12  RDVTLER-AVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R +       + +  V  +V+Q D    
Sbjct: 71  HER----TRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +S  P +  V         GQ VL+    ED   +
Sbjct: 125 TRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYAEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  V+G +  ++ V+  A     +++  L+ +         ++E   K   
Sbjct: 185 TDANFVVTG-KGGIVEVQGTAELEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|300690924|ref|YP_003751919.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
 gi|299077984|emb|CBJ50625.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
          Length = 238

 Score =  163 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDTQ +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTQVLCTASVLPK----VPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  RA+  V   +A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  D           AG PI   VA +++G+V    D   +
Sbjct: 117 DVLQADGGTRTASITGAFVAAHDAVSVMRGRGLLAGEPIRDFVAAVSVGVV----DGAPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    +   M   L  A +G   ++   
Sbjct: 173 LDLDYPEDSACDTDMNVVMTGSGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           RP+ L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     + 
Sbjct: 12  RPVTL-TRHYTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R +F       N   +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A             L+G P    V    V  ++G  VL+    ED      +
Sbjct: 128 ASITGAFVAAHDAVSVMRGRGLLAGEPIRDFVAAVSVGVVDGAPVLDLDYPEDSACDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    +   +   +       + +I    + 
Sbjct: 188 NVVMTGSGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQA 235


>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
 gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
           malayi]
          Length = 249

 Score =  163 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 100/234 (42%), Gaps = 7/234 (2%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +++ +   R DGR    +R+++ ++G+  +  GS+   +G+T+ +  V  G  E +Q   
Sbjct: 2   SIISEHGFRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAV-YGPYEPKQRSR 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R      Y+    +T E        RR +   RL  +A    +         + 
Sbjct: 61  LL--EDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEEAILTENYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++DGS   A V   +LAL DAGVP+   VA  +      G   +   D++  E+
Sbjct: 119 VFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGG---LACVDVNSREE 175

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                   VA T SG  A+ M      + +N +++ L  A++   H+ + +   
Sbjct: 176 MGIVPRLTVA-TISGQDAVVMAELQNRLHKNHLMVILGNARKATAHVHSCLEAA 228



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L  + G  + Q+DG+     G T VL  V      K              + Y++   
Sbjct: 20  RNLNYKLGVYS-QADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIINCQ-YSMATF 77

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSM 131
                +   R     +  +R+++++           +++  V   ++Q D         +
Sbjct: 78  STNERKERPRGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCELLQADGSHLA--ACV 135

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYING 159
              + AL  +G+P  G V  A      G
Sbjct: 136 NVGTLALADAGVPMRGLVAAASCACAPG 163


>gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5]
 gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis]
 gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis]
 gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5]
          Length = 245

 Score =  163 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+                PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233

Query: 536 SKVLSESRLQLG 547
            +VL +S  +L 
Sbjct: 234 KEVLGDSLPELK 245



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 29/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  +   I+   +G+VL T G T V+     +  +     G     +T  Y     A 
Sbjct: 12  RPITFDLDFISH-PEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       +  + +   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  NQRTIRESSK-GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQG--- 172
            S+  A  A+ ++             P    +    V  I+ +   +L+   +ED     
Sbjct: 128 ASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVG-IDKEQGILLDLNYEEDSSAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            +++ ++G+    + ++    + +   + +   +       + +I+   ++
Sbjct: 187 DMNVIMTGS-GRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEV 236


>gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91]
 gi|122314626|sp|Q0AJ79|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91]
          Length = 242

 Score =  163 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R + R    +R I      ++   GS L   G+T+ I   ++     E+    L G  +
Sbjct: 2   PRYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASV----IEKVPPFLKGAGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  +     G  S R +   RL  RA+  VL        T++I  
Sbjct: 58  GWLTAEYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           +  PI   VA +++G++K       L
Sbjct: 118 DVIQADGGTRTASITGAFVALCDAVGYLRAEKIISENPIKDHVAAVSVGILKGQP----L 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T + G+  +Q   +    S   + + L  A++G   + +  
Sbjct: 174 LDLDYAEDSSCDTDLNVVMTGNLGLVEVQGTAEKVVFSRQELDVMLDMAQQGLQELFDLQ 233

Query: 536 SKVLSES 542
            K L  +
Sbjct: 234 RKTLETA 240



 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 32/237 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T    R ++G+VL  YGET V+ T      +     G     LT  Y     + 
Sbjct: 13  RPIRI-TRHYIRHAEGSVLIEYGETKVICTASVIEKVPPFLKGAGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESS 125
           G+     ++RE    + +   + I R+I R++R +    K  +   Q+  +V+Q D    
Sbjct: 72  GE----RMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQADGG-- 125

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+  A  AL            +S  P +  V    V  + GQ +L+    ED    
Sbjct: 126 TRTASITGAFVALCDAVGYLRAEKIISENPIKDHVAAVSVGILKGQPLLDLDYAEDSSCD 185

Query: 173 -SLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             L++ ++G    ++ V+  A ++  S   +   +       + + +   K  +  A
Sbjct: 186 TDLNVVMTGNL-GLVEVQGTAEKVVFSRQELDVMLDMAQQGLQELFDLQRKTLETAA 241


>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
 gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
 gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
 gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
 gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
 gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
 gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
 gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
 gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
          Length = 258

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 111/246 (45%), Gaps = 10/246 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R+DGR  + +R I  +  +L+R  GS     G  + I  V  G RE   +   L   
Sbjct: 14  DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAV-FGPREV--HPRHLQDP 70

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +      YN  P +  E  R G P RR I   ++++ A   V+ +       + I  E+
Sbjct: 71  SKAIIRYRYNMAPFSVEERKRPG-PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEV 129

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++D  S  A +  +S+AL+DAGVP+   +  +A+G      D  ++ D   +ED+ G  
Sbjct: 130 LQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA----DGQLVLDPMKEEDNFGEA 185

Query: 490 DFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           D   A    +  I ++ +    G ++ + +  A++ AK+G L I     + +    +++G
Sbjct: 186 DMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVG 245

Query: 548 EFTPRV 553
           E    +
Sbjct: 246 EEMDEI 251



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 22/220 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E   + +++DG+     G+  V+A V   R +       P    +   Y    ++
Sbjct: 27  RPIKIEASVL-KRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAIIRYRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   +   +  K    ++   + + V+Q D  S   
Sbjct: 86  VEE------RKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS--R 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS-----GT 181
              + AAS AL+ +G+P +G +    V   +GQ VL+P  +ED  G  D+  +     G 
Sbjct: 138 TACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGK 197

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++ +++++   ++ D V  AI         + E   + 
Sbjct: 198 IESIALLQMDGR-MTRDEVKQAIELAKKGALQIYEMQREA 236


>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
 gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
 gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
          Length = 244

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 13/240 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +M +   R DGR  +  R I  + G L+   GSS    GD + +V V  G R+   +   
Sbjct: 10  LMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGV-FGPRDV--HPKH 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +S T      + Y+  P + GE     APSRREI   ++ + A+ P +         + +
Sbjct: 67  MSDTDTGILRVRYHMEPFSVGERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVDV 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +  A +  +S+AL DAG+P+   VA IA G V D     ++ D++ +ED 
Sbjct: 126 FIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADT----VILDVNNEEDQ 181

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  +    +   IT +Q+D     ++       +Q    G   +     K L++  
Sbjct: 182 AGQADMPIGYMPNLEKITLLQLDGV---LTPEEYKKCIQVGVDGCKLVYELQKKALNDKY 238



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 19/217 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R + ++ G + + +DG+    +G+  +L  V   R +        D   L V Y    ++
Sbjct: 27  RRIMIKAGGL-KNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILRVRYHMEPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           VG+      R+   P+  EI IS++I  ++ P  +  K  +    V I V+Q D      
Sbjct: 86  VGE------RKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
             ++ AAS AL  +G+P    V       +    +L+   +ED   Q  + +      + 
Sbjct: 138 CAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPNLEK 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + +++L+   L+ +     I  G + CK V E   K 
Sbjct: 198 ITLLQLDG-VLTPEEYKKCIQVGVDGCKLVYELQKKA 233


>gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195]
          Length = 245

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+                PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTSPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233

Query: 536 SKVLSESRLQLG 547
            +VL +S  +L 
Sbjct: 234 KEVLGDSLPELK 245



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 29/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  +   I+   +G+VL T G T V+     +  +     G     +T  Y     A 
Sbjct: 12  RPITFDLDFISH-PEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       +  + +   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  NQRTIRESSK-GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQG--- 172
            S+  A  A+ ++             P    +    V  I+ +   +L+   +ED     
Sbjct: 128 ASITGAFLAMAIAIGKLIKAGTIKTSPITDFLAAISVG-IDKEQGILLDLNYEEDSSAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            +++ ++G+    + ++    + +   + +   +       + +I+   ++
Sbjct: 187 DMNVIMTGS-GRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEV 236


>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
 gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
 gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 493

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 12/238 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           T++ D  +R+DGR ++ +R +  +VG+L R  GS     G  + +V V  G RE   +  
Sbjct: 9   TLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGV-FGPREA--HPR 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                        YN    +  + +R G PSRR I   +++R A  PV+         + 
Sbjct: 66  RSQRADSAVIRYRYNMASFSVEDRARPG-PSRRSIEISKVSREAFEPVIMAELFPKTAID 124

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++D  +  A +  SS+AL DAG+P+   +   A G V    D  I+ D++ +ED
Sbjct: 125 IFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKV----DGKIVLDLNKEED 180

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           + G  DF VA T  G IT +QMD   G ++ + +   L+  K+G   IL     VL +
Sbjct: 181 NYGEADFPVAMTQDGEITLIQMD---GNLTPDEIKQGLELVKKGCKEILEIQQAVLRK 235



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 20/247 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G ++R +DG+    +G   +L  V   R     +    D   +   Y   +++
Sbjct: 27  RPMKIEVGVLSR-ADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V        R    P+   I IS++   +  P+       K    + + V+Q D      
Sbjct: 86  VED------RARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
             ++ A+S AL  +G+P +G +       ++G+ VL+   +ED  G  D  V+ TQD  +
Sbjct: 138 TAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVAMTQDGEI 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
            +      L+ D     I  G    K   + I ++ +   ++      ++ S+       
Sbjct: 198 TLIQMDGNLTPDE----IKQGLELVKKGCKEILEIQQAVLRKKFETPVEEVSEETAPEKG 253

Query: 247 MIKEDLR 253
             KE L 
Sbjct: 254 AEKEVLE 260


>gi|209693820|ref|YP_002261748.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
 gi|226736880|sp|B6EPI9|RNPH_ALISL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|208007771|emb|CAQ77892.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRTAQQVRPITITRHFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL D              P+   VA +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGASVALADAINHMIASGKLKKNPMKGHVAAVSVGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   ++   S   ++  L  A++G   I+ + 
Sbjct: 173 CDLEYLEDSAADTDMNVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 78/231 (33%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T      ++G+VL  +G T V+ T   + ++     G+    +T  Y     A 
Sbjct: 12  RPITI-TRHFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       +     + I R+I RS+R         E    V  +V+Q D       
Sbjct: 71  -HTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  AS AL         SG     P +G V    V    G+ + +    ++     D+
Sbjct: 128 ASITGASVALADAINHMIASGKLKKNPMKGHVAAVSVGIYKGEAICDLEYLEDSAADTDM 187

Query: 177 -FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             V      ++ V+  A     S   +LD +         +IE        
Sbjct: 188 NVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238


>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
          Length = 258

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 10/246 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R+DGR  + +R I  +  +L+R  GS     G  + I  V  G RE   + + L   
Sbjct: 14  DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAV-FGPREV--HPEHLQDP 70

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +      YN  P +  E  R G P RR I   ++++ A   V+ +       + I  E+
Sbjct: 71  SKAIIRYRYNMAPFSVEERKRPG-PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEV 129

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++D  S  A +  +S+AL+DAGVP+   +  +A+G      D  ++ D   +ED+ G  
Sbjct: 130 LQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA----DGQLVLDPMKEEDNFGEA 185

Query: 490 DFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           D   A    +  I ++ +    G ++ + +  A++ AK+G L I     + +    +++G
Sbjct: 186 DMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVG 245

Query: 548 EFTPRV 553
           E    +
Sbjct: 246 EEMDEI 251



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 22/220 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E   + +++DG+     G+  V+A V   R +       P    +   Y    ++
Sbjct: 27  RPIKIEASVL-KRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   +   +  K    ++   + + V+Q D  S   
Sbjct: 86  VEE------RKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS--R 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS-----GT 181
              + AAS AL+ +G+P +G +    V   +GQ VL+P  +ED  G  D+  +     G 
Sbjct: 138 TACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGK 197

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++ +++++   ++ D V  AI         + E   + 
Sbjct: 198 IESIALLQMDGR-MTRDEVKQAIELAKKGALQIYEMQREA 236


>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
 gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
          Length = 243

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 113/241 (46%), Gaps = 9/241 (3%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R+DGR  + +R +   +G+L+  +GS+L   G+T+A+  V  G RE       
Sbjct: 7   LLREDGLRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAV-YGPREA--MPKH 63

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +S   R    + Y+  P +T E     APSRREI   ++ R A+  V+  T     ++ +
Sbjct: 64  ISLPDRAVLRVRYHMAPFSTSERKS-PAPSRREIELSKVIREALESVVFTTQYPRASIDV 122

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             EI ++DG +  A +  +SLAL DAG+P+        +G+       +++ DI+  ED 
Sbjct: 123 FIEILQADGGTRTAGLTAASLALADAGIPMKDL----VIGVAVGKVGGVLVLDINELEDE 178

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G  D  V    +    + +    G ++      A++ A +G   I     + +    L+
Sbjct: 179 YGEADLPVGIAPNT-NEIVLLQLNGVLTPEEFKQAMEMAFKGVEQIYKVAKEAMYRKYLK 237

Query: 546 L 546
           +
Sbjct: 238 M 238



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 23/221 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++  G + + ++G+ L  YG T  LA V   R         P    L V Y    ++
Sbjct: 24  RPVRIAIGVL-KNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVLRVRYHMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++  +   ++  +    V I ++Q D      
Sbjct: 83  TSE------RKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQADGG--TR 134

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLF--VSGTQDA 184
              + AAS AL  +G+P +  V+G  V  + G  VL+   L+++ G  DL   ++   + 
Sbjct: 135 TAGLTAASLALADAGIPMKDLVIGVAVGKVGGVLVLDINELEDEYGEADLPVGIAPNTNE 194

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           +++++L    L+ +    A+          +E I K+AK  
Sbjct: 195 IVLLQLNG-VLTPEEFKQAMEMAFKG----VEQIYKVAKEA 230


>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
          Length = 246

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 12/246 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+ +R+DGR +  +R I  ++G+  +  GS+   +G+T+ +  V  G  +      
Sbjct: 2   ELLSDQGLRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAV-YGPHQASSKK- 59

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S  +       Y+    +TGE  +     R+        ++A+   +         + 
Sbjct: 60  --SNHEEAIVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++DG +  A+V  ++LAL+DAG+ + + V      L       + L D+S  E+
Sbjct: 118 VYIEVLQADGGNYCASVNAATLALIDAGICLKEYVCACTASLANGN---VPLMDVSHLEE 174

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           + G     VA   S   I  M+M  +      + +   L+ A +G   + N + + + E 
Sbjct: 175 NSGGPTLTVASLPSSGKIAFMEMSQR---FHLDHLPKVLETALKGCREVQNVIDRAVREH 231

Query: 543 RLQLGE 548
             QLG+
Sbjct: 232 VTQLGQ 237



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R ++ + G  + Q DG+     G T VLA V         K   +   +   Y   T++ 
Sbjct: 20  RHIQCKLGVFS-QPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVNCQYSMATFST 78

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G+      ++  R       ++  + +++          +++  V I V+Q D  +    
Sbjct: 79  GE-----RKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQADGGNY--C 131

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQDA 184
            S+ AA+ AL+ +G+  +  V        NG   L      ++ S    L +    +   
Sbjct: 132 ASVNAATLALIDAGICLKEYVCACTASLANGNVPLMDVSHLEENSGGPTLTVASLPSSGK 191

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +  +E+       D +   +      C+ V   I +  + 
Sbjct: 192 IAFMEMSQRFHL-DHLPKVLETALKGCREVQNVIDRAVRE 230


>gi|163757816|ref|ZP_02164905.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
 gi|162285318|gb|EDQ35600.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
          Length = 238

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S + G+ +   GS L   GDT  +   +L    +E+    L    +
Sbjct: 1   MRPSGRKTDQMRAVSFERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRNGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG+  R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGDRMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G+ +AL D                +   VA ++ G+         
Sbjct: 117 DVIQADGGTRTAAITGAWIALHDCLKWMEERSMVKVERVLKDHVAAVSCGIF----AGQA 172

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ++D+   ED     D     T   GI  +Q   +    +E  +   +  AK     ++  
Sbjct: 173 VTDLDYLEDSSAETDANFVMTGTGGIVEIQGTAEGEPFTEEQLGQLMGLAKAAINDLVAL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKSAVA 238



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E G +++ ++G+ L  +G+T VL T   +  +           +T  Y     + 
Sbjct: 12  RAVSFERG-VSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRNGGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GD----RMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML--------SGLPFE----GPVVGAQVDYINGQYVLNPRLDED--- 170
               ++  A  AL          S +  E      V         GQ V +    ED   
Sbjct: 125 TRTAAITGAWIALHDCLKWMEERSMVKVERVLKDHVAAVSCGIFAGQAVTDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++GT   ++ ++   E    +E+ +   +         ++        
Sbjct: 185 ETDANFVMTGT-GGIVEIQGTAEGEPFTEEQLGQLMGLAKAAINDLVALQKSAVA 238


>gi|260463468|ref|ZP_05811668.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
 gi|259030793|gb|EEW32069.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
          Length = 238

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R IS + G+ +   GS L   GDT  +   +L    +E+    +  + +
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D    +           +   VA I+ G+     D   
Sbjct: 117 DVIQADGGTRTASITGGWVALYDCLRWMEARQMTSVSKVLKDHVAAISCGI----HDGQP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE      +  AK+G   +++ 
Sbjct: 173 VIDLDYIEDSSAGTDANFVMTGKGGIVEIQGTAEGEPFSEGQFADLMGLAKKGIQRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QQMAVA 238



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 31/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +  E G +++ ++G+ L  +G+T VL T   +  +           +T  Y     + 
Sbjct: 12  RAISFERG-VSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL--- 122
           G+     +RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQADGGTR 126

Query: 123 --------ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
                    +    +  + A     +S +  +  V        +GQ V++    ED    
Sbjct: 127 TASITGGWVALYDCLRWMEARQMTSVSKV-LKDHVAAISCGIHDGQPVIDLDYIEDSSAG 185

Query: 173 -SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G +  ++ ++   E    SE    D +       + ++        
Sbjct: 186 TDANFVMTG-KGGIVEIQGTAEGEPFSEGQFADLMGLAKKGIQRLVSLQQMAVA 238


>gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218]
          Length = 238

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ VR I           GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATV----EEGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+A+ DA             P+   VA +++G++       +L
Sbjct: 117 DVIQADGGTRTASISGASVAMADAFDKLVADGKLKKNPMKGHVAAVSVGILGQD----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK+G   I++  
Sbjct: 173 CDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLDLLAVAKKGIADIVSAQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           ++G+VL  +G T VL     +  +     GQ    +T  Y     A         RRE  
Sbjct: 24  AEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVTAEYGMLPRAT----HSRTRREAA 79

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL 138
             +     + I R+I RS+R +       E    V  +V+Q D        S+  AS A+
Sbjct: 80  NGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDCDVIQADGG--TRTASISGASVAM 137

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQGSLDLFVSGTQD-A 184
                       L   P +G V    V  + GQ VL     +++     D+ V  T++  
Sbjct: 138 ADAFDKLVADGKLKKNPMKGHVAAVSVGIL-GQDVLCDLEYVEDSAADTDMNVVMTEEGK 196

Query: 185 VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++   E    S + +LD +         ++ A  
Sbjct: 197 MIEIQGTAEGEPFSHEQLLDLLAVAKKGIADIVSAQK 233


>gi|170749350|ref|YP_001755610.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
 gi|226736917|sp|B1M4N1|RNPH_METRJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|170655872|gb|ACB24927.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
          Length = 237

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 26/245 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R +S +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADELRPVSLERAVSRYAEGSCLVSFGNTRVLCTASL----EERAPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + I  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVGSGKPSGRTQEIQRLIGRSLRAVTNLPAMGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA ++ GL K       +
Sbjct: 117 DVIQADGGTRTAAITGAWVALHDCFAWMRTRSIISVDPLRDHVAAVSCGLYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGIS--ENIMVMALQQAKRGRLHILN 533
            D+   ED     D     T   GI  +Q   ++   +  + + ++ L +A   RL  L 
Sbjct: 173 LDLDYAEDSAAETDANFVLTGRGGIVEVQGTAEMEPFTQEQLLELLGLARAGTERLVALQ 232

Query: 534 EMSKV 538
           + +  
Sbjct: 233 KEAIA 237



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   ++R ++G+ L ++G T VL T   +        G     +T  Y     A 
Sbjct: 12  RPVSLER-AVSRYAEGSCLVSFGNTRVLCTASLEERAPPWLRGSGKGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R + +     E Q+    +V+Q D    
Sbjct: 71  HER----TRREVGSGKPSGRTQEIQRLIGRSLRAVTNLPAMGERQITIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL            +S  P    V         G  VL+    ED   +
Sbjct: 125 TRTAAITGAWVALHDCFAWMRTRSIISVDPLRDHVAAVSCGLYKGTPVLDLDYAEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
              +  ++G +  ++ V+  A 
Sbjct: 185 TDANFVLTG-RGGIVEVQGTAE 205


>gi|90421849|ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris BisB18]
 gi|122477603|sp|Q21CI6|RNPH_RHOPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|90103863|gb|ABD85900.1| RNAse PH [Rhodopseudomonas palustris BisB18]
          Length = 239

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS +   GDT  +V  TL    +++    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATL----EDRLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  + R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVP-ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL D               P +   VA I+ G+     +  
Sbjct: 117 DVIQADGGTRTASITGAWVALADCIGWMKTRNMFKGTAPVLRDNVAAISCGIY----NGT 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D     T  G I  +Q   +    S++  +  +  AK+G   +++
Sbjct: 173 PVLDLDYAEDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVD 232

Query: 534 EMSKVLS 540
                ++
Sbjct: 233 LQKMAVA 239



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 34/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ +  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCMVKFGDTHVLVTATLEDRLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  LE----RTRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM--LSGLP----FEGP-------VVGAQVDYINGQYVLNPRLDED-- 170
               S+  A  AL   +  +     F+G        V        NG  VL+    ED  
Sbjct: 125 TRTASITGAWVALADCIGWMKTRNMFKGTAPVLRDNVAAISCGIYNGTPVLDLDYAEDSE 184

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
                +  ++G    ++ V+  A +   S+D  L  +         +++       
Sbjct: 185 ADTDANFVMTG-DGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVDLQKMAVA 239


>gi|50083344|ref|YP_044854.1| ribonuclease PH [Acinetobacter sp. ADP1]
 gi|49529320|emb|CAG67032.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ADP1]
          Length = 251

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 14  MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 69

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  + R     RL  R++  ++        T+ I  
Sbjct: 70  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 130 DVIQADGGTRTAAITGAAVALIDAMNVLLEKKKIKQDPLKGLVAAISVGIYQDE----VL 185

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 186 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQ 245

Query: 536 SKV 538
            + 
Sbjct: 246 QQA 248



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 25  RDVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRST 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + T     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 84  -HTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TRT 140

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A+ AL+           +   P +G V    V     + +L+   +ED   Q  L
Sbjct: 141 AAITGAAVALIDAMNVLLEKKKIKQDPLKGLVAAISVGIYQDEVLLDLCYEEDSNCQTDL 200

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + +  ++  A +   +       +       + +I+   + 
Sbjct: 201 NVVMTQAGEFI-EIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQA 248


>gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
 gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
          Length = 238

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R++  +R +S      +   G+ L   GDT+ +   ++ T    Q    L GT +
Sbjct: 1   MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIET----QVPRWLKGTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E ++     G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWITAEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA +++G +K+G+   +L
Sbjct: 117 DVLQADGGTRTASITGAAVALVDALEKLQAAKKLKADPLVGLVAAVSVG-IKNGE---VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED     D  V  T  G    +Q   +    +       L  A+ G   ++ E 
Sbjct: 173 LDLNYSEDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAQADEMLAIAEEGIKQLIAEQ 232

Query: 536 SKV 538
             V
Sbjct: 233 QAV 235



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++GAVL +YG+T VL T   +  +     G     +T  Y     A  +        +
Sbjct: 22  KHAEGAVLVSYGDTKVLCTASIETQVPRWLKGTGKGWITAEYGMLPRATHE-RTQREAAK 80

Query: 82  SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I RS+R +    K  +N   +  +V+Q D        S+  A+ AL+
Sbjct: 81  GKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDCDVLQADGG--TRTASITGAAVALV 138

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGT-QDAVL 186
                      L   P  G V    V   NG+ +L+    ED     DL V  T +   +
Sbjct: 139 DALEKLQAAKKLKADPLVGLVAAVSVGIKNGEVLLDLNYSEDSSCDTDLNVVMTQKGEFI 198

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
            ++  A +   +     + +       K +I    
Sbjct: 199 EIQGTAEEKPFTRAQADEMLAIAEEGIKQLIAEQQ 233


>gi|251791523|ref|YP_003006244.1| ribonuclease PH [Dickeya zeae Ech1591]
 gi|247540144|gb|ACT08765.1| ribonuclease PH [Dickeya zeae Ech1591]
          Length = 238

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNGLVAGGKLKASPLKGMVAAVSVGIVKGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S + ++  L  A++G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL   T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTF-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + +     + I R+I RS+R     +K  +    +  +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL   L+GL         P +G V    V  + G+ V +    ++     D+
Sbjct: 128 ASITGACVALADALNGLVAGGKLKASPLKGMVAAVSVGIVKGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAISKLAKM 224
            V  T+D  + +E++     E    D +L  +       + ++ A       
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238


>gi|82701201|ref|YP_410767.1| ribonuclease PH [Nitrosospira multiformis ATCC 25196]
 gi|123545290|sp|Q2YCZ6|RNPH_NITMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|82409266|gb|ABB73375.1| RNAse PH [Nitrosospira multiformis ATCC 25196]
          Length = 238

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +       +   GS L   GDT+ I   ++    DE+    L G  +
Sbjct: 1   MRPSKRRPDQLRSVQITRHYTRHAEGSVLIECGDTRIICTASV----DEKVPLFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +     G  S R +   RL  RA+  V+  T     T+++  
Sbjct: 57  GWLTAEYGMLPRSTNERMQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+ D              PI+  VA +++G+     + + +
Sbjct: 117 DVIQADGGTRTASITGAFVAVHDAIGTLLRKQAIEATPITGHVAAVSVGVY----EGVPM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +  TD  G+  MQ   +    S N + M L  A++G   ++   
Sbjct: 173 LDLDYLEDSRCDTDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQGIRELIAAQ 232

Query: 536 SKVLSE 541
              L+ 
Sbjct: 233 KNALNR 238



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    R ++G+VL   G+T ++ T   D  +     G+    LT  Y     + 
Sbjct: 12  RSVQI-TRHYTRHAEGSVLIECGDTRIICTASVDEKVPLFLRGKGQGWLTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESS 125
            +     ++RE    + +   + I R+I R++R +    K  +   QV  +V+Q D    
Sbjct: 71  NER----MQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  A+            +   P  G V    V    G  +L+    ++ +  
Sbjct: 125 TRTASITGAFVAVHDAIGTLLRKQAIEATPITGHVAAVSVGVYEGVPMLDLDYLEDSRCD 184

Query: 174 LDLFVSGTQD-AVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            D+ +  T D  ++ ++  A  +  S + +   +       + +I A  
Sbjct: 185 TDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQGIRELIAAQK 233


>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
 gi|259494118|sp|C4LJY5|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
          Length = 254

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 24/253 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +   VR DGR  + +R +    G      GS L   G+T+ +   ++    +++      
Sbjct: 1   MSDFVRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASV----EDRVPRFKK 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y+ LP AT E        G    R     RL  R++   +   A    T+
Sbjct: 57  DSGEGWLTAEYSMLPSATAERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISK-----------PVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A++ G+ +AL DA   +             PVA +++GL+    D
Sbjct: 117 ALDCDVLQADGGTRTASITGAYVALADALTYLEAEGLVSQNALLPPVAAVSVGLI----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             +  D+  +ED    +D  V  T+SG    +Q   +    S   ++  +  A++G   +
Sbjct: 173 GHVCLDLPYEEDSRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSEL 232

Query: 532 LNEMSKVLSESRL 544
           +    + LS+   
Sbjct: 233 IRAQKEALSKPYP 245



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 23/213 (10%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+ T  V DR  +  +D     LT  Y     A  +       R  +  
Sbjct: 30  GSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGWLTAEYSMLPSATAERMPRESMR-GKVK 88

Query: 86  ENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR++ RS+R     K    N   +  +V+Q D        S+  A  AL     
Sbjct: 89  GRTHEISRLVGRSLRAAIDLKALGENTIALDCDVLQADGG--TRTASITGAYVALADALT 146

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDA-VLMVEL 190
                  +S      PV    V  I+G   L+ P  ++ +  +D+ V  T+    + ++ 
Sbjct: 147 YLEAEGLVSQNALLPPVAAVSVGLIDGHVCLDLPYEEDSRAEVDMNVVMTESGEFVEIQG 206

Query: 191 EANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
                +   + ++  +      C  +I A  + 
Sbjct: 207 TGEHSTFSREQLMQFMDAAEKGCSELIRAQKEA 239


>gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
 gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
          Length = 234

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +RD++ ++G+ +   GS L   G+T  +   +     +E     L   +R
Sbjct: 1   MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASF----EENVPPWLKNQRR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGA---PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y+ LP AT    R      PS R     RL  R++  V+   A     +++  +
Sbjct: 57  GWVTAEYSMLPRATHTRGRRERDKGPSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCD 116

Query: 429 ITESDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +AL       + AGV    P++  VA I+ GL         + 
Sbjct: 117 VLQADGGTRTASITGGYVALKQAIDWALSAGVLTTSPLTDSVAAISCGLYNR----APVV 172

Query: 478 DISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  DED     D     T   GI  +Q   +    +++     +  AK     +  +  
Sbjct: 173 DLDYDEDSTAQADANFVFTGTGGIVEIQATAEGDPFADDEFAALVSLAKAACQELSEKQK 232

Query: 537 K 537
            
Sbjct: 233 S 233



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 83/229 (36%), Gaps = 27/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E G + R ++G+ L  +G T VL T  ++ ++      Q    +T  Y     A 
Sbjct: 12  RDVTFELG-VNRYAEGSCLVRFGNTHVLCTASFEENVPPWLKNQRRGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                G   R+  P+     I R+I RS+R +       E   QV  +V+Q D       
Sbjct: 71  --HTRGRRERDKGPSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCDVLQADGG--TRT 126

Query: 129 VSMVAASAAL------MLSG-----LPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+     AL       LS       P    V        N   V++   DED   Q   
Sbjct: 127 ASITGGYVALKQAIDWALSAGVLTTSPLTDSVAAISCGLYNRAPVVDLDYDEDSTAQADA 186

Query: 175 DLFVSGTQDAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +   +GT   ++ ++   E +  ++D     +      C+ + E    L
Sbjct: 187 NFVFTGT-GGIVEIQATAEGDPFADDEFAALVSLAKAACQELSEKQKSL 234


>gi|311069329|ref|YP_003974252.1| ribonuclease PH [Bacillus atrophaeus 1942]
 gi|310869846|gb|ADP33321.1| ribonuclease PH [Bacillus atrophaeus 1942]
          Length = 245

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+ +GV    P++  +A I++G+ K+     +L
Sbjct: 117 DVIQADGGTRTASITGAFLAMGIAIGKLVKSGVLKKTPVTDFLAAISVGIDKEQG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYTEDSAAEVDMNVIMTGSGRFVELQGTGEEATFSREDLDGLLSLAEKGIQELIDKQ 233

Query: 536 SKVLSESRLQLG 547
             VL +   +L 
Sbjct: 234 KAVLGDYLPELK 245



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 86/229 (37%), Gaps = 29/229 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  +   I+   +G+VL T G T V+     +  +     G+    +T  Y     A 
Sbjct: 12  RPITFDLDFISH-PEGSVLITAGNTKVICNASVEDRVPPFLRGEGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       +  + T   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  NQRTIRESSK-GKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQ--YVLNPRLDED---QG 172
            S+  A  A+ +       SG+    P    +    V  I+ +   +L+    ED   + 
Sbjct: 128 ASITGAFLAMGIAIGKLVKSGVLKKTPVTDFLAAISVG-IDKEQGLLLDLNYTEDSAAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
            +++ ++G+    + ++    + +   + +   +       + +I+   
Sbjct: 187 DMNVIMTGS-GRFVELQGTGEEATFSREDLDGLLSLAEKGIQELIDKQK 234


>gi|188579737|ref|YP_001923182.1| ribonuclease PH [Methylobacterium populi BJ001]
 gi|226736916|sp|B1ZJ73|RNPH_METPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|179343235|gb|ACB78647.1| ribonuclease PH [Methylobacterium populi BJ001]
          Length = 237

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +RD++ +  + +   GS L   G+T+ +   +L    +E+    L G+ +
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASL----EERGPPWLRGSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA ++ G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   ++   SE   +  L  AK G  +++   
Sbjct: 173 LDLDYAEDSAAETDANFVVTGKGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQ 232

Query: 536 SKVLS 540
            K ++
Sbjct: 233 RKAIA 237



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE   +AR ++G+ L T+G T VL T   +        G     +T  Y     A 
Sbjct: 12  RDVTLER-AVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
            +      RRE    +P+     I R+I RS+R +       + +  V  +V+Q D    
Sbjct: 71  HER----TRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +S  P +  V         GQ VL+    ED   +
Sbjct: 125 TRTASITGAWVALHDCFAWMRARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYAEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  V+G +  ++ V+   E    SE   ++ +         ++E   K   
Sbjct: 185 TDANFVVTG-KGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQRKAIA 237


>gi|75674392|ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-255]
 gi|123614308|sp|Q3SW80|RNPH_NITWN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|74419262|gb|ABA03461.1| RNAse PH [Nitrobacter winogradskyi Nb-255]
          Length = 237

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G    R +   RL  R++   +   A     + I  
Sbjct: 57  GWVTAEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISK-----------PVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D    +              VA I+ G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAWVALADCVNWMKARNMLKAGVLRGNVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    S++  +  +  AK+G   +++  
Sbjct: 173 LDLDYAEDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KMAVA 237



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  LER----TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL              +G+   G V        NG  VL+    ED   
Sbjct: 125 TRTASITGAWVALADCVNWMKARNMLKAGV-LRGNVAAISCGIYNGTPVLDLDYAEDSEA 183

Query: 171 QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
               +  ++G +  ++ V+  A ++  S+D  L  +         +++       
Sbjct: 184 DTDANFVMTG-EGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>gi|209883567|ref|YP_002287424.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
 gi|226736922|sp|B6JCH9|RNPH_OLICO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209871763|gb|ACI91559.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
          Length = 238

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G+++   GS +   GDT+ +V  TL    +E+    L G  R
Sbjct: 1   MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E  R     G  S R +   RL  R++   +   A     + I  
Sbjct: 57  GWVTAEYGMLPRATHERVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D                +   VA I+ G+     +   
Sbjct: 117 DVIQADGGTRTASITGAWVALADCLQWMKARNMLKNDNVLRDNVAAISCGIY----NGTP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T  G +  +Q   +    S+   +  +  A+ G   ++  
Sbjct: 173 VLDLDYAEDSEAETDANFVMTGDGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVEL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKIAMA 238



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 33/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE G + + ++G+ +  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RPVSLERGVV-KYAEGSCMVKFGDTRVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +     +RRE    + +   + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  HER----VRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL              +       V        NG  VL+    ED   
Sbjct: 125 TRTASITGAWVALADCLQWMKARNMLKNDNVLRDNVAAISCGIYNGTPVLDLDYAEDSEA 184

Query: 171 QGSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +   +  ++G    ++ V+  A     S++  L  +    N    ++E   
Sbjct: 185 ETDANFVMTG-DGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVELQK 234


>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
 gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
 gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
          Length = 241

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R + AQ+G + +  GS++F  G+T+ I  V  G RE +    
Sbjct: 2   EFVNPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAV-YGPREVQNRSQ 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            ++   +      Y+    +TG+  R     RR      + R+A+   +         + 
Sbjct: 61  QIN--DQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED
Sbjct: 119 IYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTP----LLDLNYVED 174

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G  D  V        +T +QMD K   +  +     +Q A  G   I N + +VL E+
Sbjct: 175 SAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREVLLEN 231

Query: 543 RLQLG 547
             QL 
Sbjct: 232 TKQLE 236



 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 14/215 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R L+ + G +A+ +DG+ +   G T V+A V   R +++      D   +   Y    ++
Sbjct: 20  RQLRAQIGAVAK-ADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVRCEYSMANFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G       RR+ +       IS +I +++           +Q+ I V     +      
Sbjct: 79  TGD-----RRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQVLQADGGTRSA 133

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGT---QDAVL 186
            + AA+ AL  +G+P    V      ++N   +L+    ED         G     D V 
Sbjct: 134 CINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVT 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++++A  L  D   + +      CK +   I ++
Sbjct: 194 LLQMDAK-LPIDTFENVMQLAVEGCKAIANYIREV 227


>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
 gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
          Length = 234

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 101/234 (43%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M+ + +R DGR    +R I  + G+L+R  GS+    G  + + V   G RE   Y+  L
Sbjct: 1   MMSEMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKIL-VAVYGPRES--YIRRL 57

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                      YN  P +  +  R G P RR     ++   A+ P L         + I 
Sbjct: 58  LEPNTGVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPALMLENYPRSMVDIY 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ E++G +  A +  +S+AL+DAG+P+   V G A G V D     I+ D+S  ED  
Sbjct: 117 IEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDK----IVLDLSEVEDKE 172

Query: 487 GHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D  +A       IT +Q D   G +S+     A+  A  G   +     + 
Sbjct: 173 GQADVPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEGCRKVNEIQKEA 223



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 17/216 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + R +DG+     G   +L  V   R     +   P    +   Y    ++
Sbjct: 17  RPIKIEAGVLER-ADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVIRCRYNMAPFS 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V        R+   P      IS++   ++RP  +     ++   + I V++   E    
Sbjct: 76  VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEA--EGGTR 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS-GTQDAV 185
              + AAS AL+ +G+P +  VVG     +N + VL+   +++ +G  D+ ++   +   
Sbjct: 128 CAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPRTGE 187

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + +      LS++   +AI      C+ V E   + 
Sbjct: 188 ITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEA 223


>gi|85711491|ref|ZP_01042549.1| RNase PH [Idiomarina baltica OS145]
 gi|85694643|gb|EAQ32583.1| RNase PH [Idiomarina baltica OS145]
          Length = 237

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    +      L G  +
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGDTKVLCNATV----EAGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   S+     G    R +   RL  R++   +   A    T+ +  
Sbjct: 57  GWVTAEYSMLPRSTHTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+ + VA I++G+V    D   +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALNYMRASKMVKVNPLKEMVAAISVGIV----DGDAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G    +Q   +    S + M   +  A+     +++  
Sbjct: 173 SDLEYIEDSQAETDMNVVMTEAGKFIEIQGTAEGEAFSYDEMQSLVDIARVSIKELIDIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTI-TRNFTKHAEGSVLIEFGDTKVLCNATVEAGVPRFLKGQGQGWVTAEYSMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
                       +     + I R+I RS+R     K    N   +  +V+Q D       
Sbjct: 71  -HTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL+        S +    P +  V    V  ++G  V +    ++ Q   D+
Sbjct: 128 ASITGACVALVDALNYMRASKMVKVNPLKEMVAAISVGIVDGDAVSDLEYIEDSQAETDM 187

Query: 177 FVSGTQ-DAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V  T+    + ++   E    S D +   +       K +I+       
Sbjct: 188 NVVMTEAGKFIEIQGTAEGEAFSYDEMQSLVDIARVSIKELIDIQKAALA 237


>gi|226952284|ref|ZP_03822748.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|294648770|ref|ZP_06726228.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836950|gb|EEH69333.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|292825340|gb|EFF84085.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 238

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   +A I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLSNKKIKQDPLKGLIAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGIAELIQKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QQA 235



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  REVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL------MLSGL-----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A+ AL      +LS       P +G +    V     + +L+   +ED   Q  L
Sbjct: 128 AAITGAAVALVDAMNVLLSNKKIKQDPLKGLIAAISVGMYQDEVLLDLCYEEDSNCQTDL 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + + +    E    +       +         +I+   + 
Sbjct: 188 NVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGIAELIQKQQQA 235


>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
           35061]
 gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
          Length = 234

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 101/234 (43%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M+ + +R DGR    +R I  + G+L+R  GS+    G  + + V   G RE   Y+  L
Sbjct: 1   MMSEMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKIL-VAVYGPRES--YIRRL 57

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                      YN  P +  +  R G P RR     ++   A+ P L         + I 
Sbjct: 58  LEPNTGVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPALMLENYPRSMVDIY 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ E++G +  A +  +S+AL+DAG+P+   V G A G V D     I+ D+S  ED  
Sbjct: 117 IEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDE----IILDLSEVEDKE 172

Query: 487 GHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D  +A       IT +Q D   G +S+     A+  A  G   +     + 
Sbjct: 173 GQADVPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEGCRKVNEIQKEA 223



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 90/216 (41%), Gaps = 17/216 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + R +DG+     G   +L  V   R     +   P    +   Y    ++
Sbjct: 17  RPIKIEAGVLER-ADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVIRCRYNMAPFS 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V        R+   P      IS++   ++RP  +     ++   + I V++   E    
Sbjct: 76  VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEA--EGGTR 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS-GTQDAV 185
              + AAS AL+ +G+P +  VVG     +N + +L+   +++ +G  D+ ++   +   
Sbjct: 128 CAGITAASVALVDAGIPMKDIVVGCAAGKVNDEIILDLSEVEDKEGQADVPIAMMPRTGE 187

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + +      LS++   +AI      C+ V E   + 
Sbjct: 188 ITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEA 223


>gi|15615630|ref|NP_243934.1| ribonuclease PH [Bacillus halodurans C-125]
 gi|21759418|sp|Q9K8D8|RNPH_BACHD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|10175690|dbj|BAB06787.1| ribonuclease PH [Bacillus halodurans C-125]
          Length = 257

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 23/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +RMD R ++ +R IS ++  L    GS L   G+T+ I   +L    +++    L G  +
Sbjct: 1   MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASL----EDRVPPFLRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  ++        T+ I  
Sbjct: 57  GWITAEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL                PI   +A +++G+         +
Sbjct: 117 DVIQADGGTRTTSITGAFVALSLAMEKALANGAIQEWPIDDFLAAVSVGI---DPKLGAI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T  G    +Q   +    S N ++  L  A +G   ++ E 
Sbjct: 174 LDLCYAEDAQAEVDMNVVMTGKGEYVELQGTGEEATFSHNQLLTILALADKGIKQLIEEQ 233

Query: 536 SKV 538
              
Sbjct: 234 RNA 236



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +E   +    +G+VL + G T V+ T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPISIEINYL-HHPEGSVLISIGNTKVICTASLEDRVPPFLRGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  + +   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  EQRNMRESTR-GKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYING-QYVLNPRLDED---QGS 173
            S+  A  AL L+             P +  +    V        +L+    ED   +  
Sbjct: 128 TSITGAFVALSLAMEKALANGAIQEWPIDDFLAAVSVGIDPKLGAILDLCYAEDAQAEVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           +++ ++G  + V  ++    + +   + +L  +       K +IE  
Sbjct: 188 MNVVMTGKGEYV-ELQGTGEEATFSHNQLLTILALADKGIKQLIEEQ 233


>gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42]
 gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42]
          Length = 245

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+                P++  +A I++G+ K+     +L
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLVKSGVIKTSPVTDYLAAISVGMDKEEG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T SG    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQ 233

Query: 536 SKVLSESRLQLG 547
            +VL E+  +L 
Sbjct: 234 KEVLGETLPELK 245



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 80/222 (36%), Gaps = 26/222 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL T G T V+     +  +     G     +T  Y     A  +       +  + +
Sbjct: 26  GSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPRATNQRTIRESSK-GKVS 84

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
              + I R+I R++R +    K  +    +  +V+Q D        S+  A  A+ +   
Sbjct: 85  GRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRTASITGAFLAMAIAIG 142

Query: 141 ----SGL----PFEGPVVGAQVDYINGQ-YVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
               SG+    P    +    V     +  +L+   +ED   +  +++ ++G+    + +
Sbjct: 143 KLVKSGVIKTSPVTDYLAAISVGMDKEEGLLLDLNYEEDSAAEVDMNIIMTGS-GRFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +    + +   + +   +       + +I+   ++      E
Sbjct: 202 QGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVLGETLPE 243


>gi|294101305|ref|YP_003553163.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
 gi|293616285|gb|ADE56439.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
          Length = 260

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 24/266 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D  +R DGR    +R IS Q        G+ L   GDT+ I   ++    +++    L
Sbjct: 1   MEDTLLRSDGRKFNEIRPISFQRHFTCYAEGAVLACFGDTKVICTASV----EDRVPPFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G+ +      Y  LP AT E +      GA S R     RL  R++      +     T
Sbjct: 57  RGSGQGWISAEYAMLPRATAERTSRMTSKGAISGRSHEIQRLIGRSLRASADLSLLGERT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A + G+ +AL D             +P+   VA +++G +    
Sbjct: 117 IWLDCDVIQADGGTRTAAISGAFVALFDAMRCLKAQDVIEKIPVKSFVAAVSVGKI---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           +  +L D+  +ED    +D  V       +  +Q   + G  + +     L  A+ G   
Sbjct: 173 EGSLLLDLCYEEDSCADVDCNVVMNGDKQLIEIQGTGERGTFARDEFDAMLDLAEDGIQT 232

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIM 556
           I+   ++VL  S  +      ++   
Sbjct: 233 IMFSQAEVLQISEEERHACVGKICSF 258



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 23/222 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++GAVLA +G+T V+ T   +  +     G     ++  Y     A  +     +  +  
Sbjct: 29  AEGAVLACFGDTKVICTASVEDRVPPFLRGSGQGWISAEYAMLPRATAE-RTSRMTSKGA 87

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALM-- 139
            +     I R+I RS+R         E  +    +V+Q D        ++  A  AL   
Sbjct: 88  ISGRSHEIQRLIGRSLRASADLSLLGERTIWLDCDVIQADGG--TRTAAISGAFVALFDA 145

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                    +  +P +  V    V  I G  +L+   +ED       ++ ++G +  + +
Sbjct: 146 MRCLKAQDVIEKIPVKSFVAAVSVGKIEGSLLLDLCYEEDSCADVDCNVVMNGDKQLIEI 205

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
               E    + D     +    +  + ++ + +++ ++  +E
Sbjct: 206 QGTGERGTFARDEFDAMLDLAEDGIQTIMFSQAEVLQISEEE 247


>gi|126738497|ref|ZP_01754202.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
 gi|126720296|gb|EBA17002.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
          Length = 237

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G  +   GS L   G+T  +   TL    +E+    + G+  
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSCLIKMGETHVLCTATL----EERVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +A       LM AG     P+  PV+ I+ G+         +
Sbjct: 117 DVLQADGGTRCAAITGGWVALRLAVNKLMKAGDVTIDPLMDPVSAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    S + M   +  A++G   +    
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSGKLIEVQMSAEGSIFSRDQMNQLMDLAEKGTSELAALQ 232

Query: 536 SKVLS 540
                
Sbjct: 233 KAACE 237



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG   + ++G+ L   GET VL T   +  +     G     +T  Y     A 
Sbjct: 12  RPVSIETG-FTKHAEGSCLIKMGETHVLCTATLEERVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               ++     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 125 TRCAAITGGWVALRLAVNKLMKAGDVTIDPLMDPVSAISCGIYAGQPVLDLDYPEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   + + +  E +  S D +   +         +     
Sbjct: 185 VDGNFIMTGSGKLIEVQMSAEGSIFSRDQMNQLMDLAEKGTSELAALQK 233


>gi|17546878|ref|NP_520280.1| ribonuclease PH [Ralstonia solanacearum GMI1000]
 gi|21759400|sp|Q8XXF5|RNPH_RALSO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17429178|emb|CAD15866.1| probable ribonuclease ph (rnase ph) (trnanucleotidyltransferase)
           protein [Ralstonia solanacearum GMI1000]
          Length = 238

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDT  +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPK----VPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  RA+  V   +A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  D            G PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAHDAISVMRKKGQLTGEPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +  T   G   +Q   +    +   M   L  A  G   ++   
Sbjct: 173 LDLDYPEDASCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           RP+ L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     + 
Sbjct: 12  RPVTL-TRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A             L+G P    V    V  ++G  VL+    ED      +
Sbjct: 128 ASITGAFVAAHDAISVMRKKGQLTGEPIRDFVAAVSVGVVDGVPVLDLDYPEDASCDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G    V +    E    +   +   +    +  + +I    + 
Sbjct: 188 NIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQA 235


>gi|148251804|ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1]
 gi|166228266|sp|A5E8I9|RNPH_BRASB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146403977|gb|ABQ32483.1| RNAse PH [Bradyrhizobium sp. BTAi1]
          Length = 237

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  TL    +++    L G  R
Sbjct: 1   MRPSRRAPDELRPVSLERGVVKYAEGSCLVKFGDTHVLVTATL----EDRLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  + R +   RL  R++   +   A     + +  
Sbjct: 57  GWITAEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPIS-----------KPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D    +              VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAWVALADCIKWMKTRNMLKTEVLRANVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    +E   +  +  A++G   +++  
Sbjct: 173 LDLDYAEDSEAETDANFVMTGDGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KMAVA 237



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RPVSLERGVV-KYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    + T   + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  LER----TRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLSGLPFEGP------------VVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL    + +               V        NG  VL+    ED   
Sbjct: 125 TRTASITGAWVALADC-IKWMKTRNMLKTEVLRANVAAISCGIYNGTPVLDLDYAEDSEA 183

Query: 171 QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G    ++ V+  A +   +E   L  +         +++       
Sbjct: 184 ETDANFVMTG-DGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQKMAVA 237


>gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 245

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+                PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELVDKQ 233

Query: 536 SKVLSESRLQLG 547
            + L +S  +L 
Sbjct: 234 KEELGDSLPELK 245



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 84/230 (36%), Gaps = 29/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  +   I+   +G+VL T G T V+     +  +     G     +T  Y     A 
Sbjct: 12  RPITFDLDFISH-PEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       +  + +   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  NQRTIRESSK-GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQG--- 172
            S+  A  A+ ++             P    +    V  I+ +   +L+   +ED     
Sbjct: 128 ASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVG-IDKEQGILLDLNYEEDSSAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
            +++ ++G+    + ++    + +   + +   +       + +++   +
Sbjct: 187 DMNVIMTGS-GRFVELQGTGEEATFSREDLNGLLGLAEKGIQELVDKQKE 235


>gi|300714644|ref|YP_003739447.1| ribonuclease PH [Erwinia billingiae Eb661]
 gi|299060480|emb|CAX57587.1| Ribonuclease PH [Erwinia billingiae Eb661]
          Length = 238

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   L   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVSIGKLKTNPMKGMVAAISVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S + ++  L  A+ G   ++   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLQLLALARGGIDSLILAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALKD 238



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL   L+ L         P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNHLVSIGKLKTNPMKGMVAAISVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAISKLAKM 224
            V  T+D  + +E++     E    D +L  +         +I A     K 
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGEPFSHDELLQLLALARGGIDSLILAQKAALKD 238


>gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073]
 gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073]
          Length = 250

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 105/245 (42%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR    +R ++ +   L+   GS+L   GDT+ I   T+    +E+    L  T + 
Sbjct: 3   RANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATV----EEKVPPFLKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T E +      G  + R     RL  R++  V+  +     T+ +  +
Sbjct: 59  WITAEYSLLPRSTKERTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGERTIWLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + GS +AL +A            +P+   +A +++GLV D     ++ 
Sbjct: 119 VLQADGGTRTAAITGSFVALAEALAGLVAAGGVPAMPLKDFLAAVSVGLVDDE----LIL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  T SG +  +Q   +    +   +   L  A  G   ++    
Sbjct: 175 DLDFQEDSHAGVDMNVVMTGSGQLVEVQGTAEGRPFTREQLTAMLDLAGEGIESLIAIQK 234

Query: 537 KVLSE 541
           +VL +
Sbjct: 235 QVLGD 239



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 86/231 (37%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RP+ +E     + ++G+ L T G+T V+ +   +  +     F        +T  Y    
Sbjct: 13  RPVTIER-HYLKYAEGSALITVGDTRVICSATVEEKVPP---FLKNTGKGWITAEYSLLP 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESS 125
            +  +     + R  R T     I R+I RS+R +       E  +    +V+Q D    
Sbjct: 69  RSTKERTIREVTR-GRLTGRTQEIQRLIGRSLRSVVDMSLLGERTIWLDCDVLQADGG-- 125

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               ++  +  AL   L+GL         P +  +    V  ++ + +L+    ED    
Sbjct: 126 TRTAAITGSFVALAEALAGLVAAGGVPAMPLKDFLAAVSVGLVDDELILDLDFQEDSHAG 185

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ ++G+   V +    E    + + +   +       + +I    ++
Sbjct: 186 VDMNVVMTGSGQLVEVQGTAEGRPFTREQLTAMLDLAGEGIESLIAIQKQV 236


>gi|89093846|ref|ZP_01166792.1| Ribonuclease PH [Oceanospirillum sp. MED92]
 gi|89081976|gb|EAR61202.1| Ribonuclease PH [Oceanospirillum sp. MED92]
          Length = 256

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 100/250 (40%), Gaps = 26/250 (10%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           KK R  GRD++ +R++       +   GS L   G+T+ +   T+    +      L G+
Sbjct: 15  KKHRPSGRDNDQMREVKITRNFTKHAEGSVLVEFGETKVLCTATV----ERGVPRFLRGS 70

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP +T   +      G    R +   RL  R++   L        T+ +
Sbjct: 71  GQGWVTAEYGMLPRSTTTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTITL 130

Query: 426 VSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A++ G+ +AL D              G PI + +A +++G+     +
Sbjct: 131 DCDVLQADGGTRTASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIF----E 186

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              + D+   ED     D  V  T   G   +Q   +    ++  +   L  A++G   I
Sbjct: 187 GEAVLDLDYAEDSKAETDMNVIMTSKGGFIEVQGTAEGAPYTQEELNAMLDLARKGISEI 246

Query: 532 LNEMSKVLSE 541
           +    + L+E
Sbjct: 247 VELQQEALAE 256



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 28/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +GET VL T   +R +     G     +T  Y     + 
Sbjct: 28  REVKI-TRNFTKHAEGSVLVEFGETKVLCTATVERGVPRFLRGSGQGWVTAEYGMLPRST 86

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + +     + I R+I RS+R     +K  +N   +  +V+Q D       
Sbjct: 87  -TTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTITLDCDVLQADGG--TRT 143

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  A  AL  +             G P +  +    V    G+ VL+    ED   + 
Sbjct: 144 ASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIFEGEAVLDLDYAEDSKAET 203

Query: 173 SLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +++ ++ ++   + V+  A     +++ +   +         ++E   +    
Sbjct: 204 DMNVIMT-SKGGFIEVQGTAEGAPYTQEELNAMLDLARKGISEIVELQQEALAE 256


>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
 gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
          Length = 242

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 9/228 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +     +  +
Sbjct: 8   TGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQV-NS 65

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +       Y     +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 66  KDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G  
Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTP----LLDLNYIEDSAGGP 181

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNE 534
           D  V        +T +QMD K+   +   +M +A++  K    +I   
Sbjct: 182 DVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIREV 229



 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 19/218 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-----FPLTVNYQERTY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++           +   Y+   +
Sbjct: 21  RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDALVRCEYRMADF 79

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSP 126
           + G       RR+ +       IS +I +++          +++  + + V+Q D     
Sbjct: 80  STGD-----RRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADGG--T 132

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG---TQD 183
               + AA+ AL  +G+P    V      Y+    +L+    ED         G     D
Sbjct: 133 RAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGGPDVTVGFLTKMD 192

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            V +++++A  L  D     +      CK +   I ++
Sbjct: 193 KVTLLQMDAK-LPMDTFETVMDLAIEGCKAIANYIREV 229


>gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
 gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
          Length = 248

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +E VR      G  +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASI----EDKVPPFLKGQGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN LP +TG              R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWITAEYNMLPRSTGTRKVRDIARLKVDGRTMEIQRLIGRALRSVMDLKALGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL+D              PI K V+  ++G++ D      +
Sbjct: 117 DVIQADGGTRTTSITGAFVALVDAVNKLHKEKPFEVYPIRKFVSATSVGILNDEK----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD G    +Q   +    S + +   L  A++G   ++   
Sbjct: 173 LDLCYEEDSNAKVDMNVIATDEGEFIEIQGTGEESPFSRDDLNDLLDLAQKGIKQMVQIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KDA 235



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 23/220 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     GQ    +T  Y     + G      + R 
Sbjct: 22  KYAEGSVLIEVGDTKVICTASIEDKVPPFLKGQGEGWITAEYNMLPRSTGTRKVRDIAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            +     + I R+I R++R +       E    +  +V+Q D        S+  A  AL+
Sbjct: 81  LKVDGRTMEIQRLIGRALRSVMDLKALGEKTIWIDCDVIQADGG--TRTTSITGAFVALV 138

Query: 140 LS------GLPFEGP-----VVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA-VL 186
            +        PFE       V    V  +N + +L+   +ED    +D+ V  T +   +
Sbjct: 139 DAVNKLHKEKPFEVYPIRKFVSATSVGILNDEKILDLCYEEDSNAKVDMNVIATDEGEFI 198

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            ++    +   S D + D +       K +++      KM
Sbjct: 199 EIQGTGEESPFSRDDLNDLLDLAQKGIKQMVQIQKDALKM 238


>gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01]
 gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01]
          Length = 239

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++ +         L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESG----VPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D            G P+ + +A +++G+ +       +
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKVLKKRGALKGEPLKQMIAAVSVGIYQGEP----V 173

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+  G   +Q   +      +     L  A++G   I    
Sbjct: 174 LDLDYLEDSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQ 233

Query: 536 SKV 538
              
Sbjct: 234 KAA 236



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV V     +   GQ    LT  Y     + 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R     SK  +N   V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            L G P +  +    V    G+ VL+    ED   +  L
Sbjct: 129 ASITGAMVALIDALKVLKKRGALKGEPLKQMIAAVSVGIYQGEPVLDLDYLEDSAAETDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++      + V+  A       D     +         + E   
Sbjct: 189 NVVMT-NAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQK 234


>gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208]
 gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3]
          Length = 245

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 112/252 (44%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+  A             P++  +A I++G+ K+     +L
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAAGKLVKSGVIKTSPVTDYLAAISVGMDKEEG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T SG    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQ 233

Query: 536 SKVLSESRLQLG 547
            +VL ++  +L 
Sbjct: 234 KEVLGDTLPELK 245



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL T G T V+     +  +     G     +T  Y     A  +       +  + +
Sbjct: 26  GSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPRATNQRTIRESSK-GKVS 84

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
              + I R+I R++R +    K  +    +  +V+Q D        S+  A  A+ +   
Sbjct: 85  GRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRTASITGAFLAMAIAAG 142

Query: 141 ----SGL----PFEGPVVGAQVDYINGQ-YVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
               SG+    P    +    V     +  +L+   +ED   +  +++ ++G+    + +
Sbjct: 143 KLVKSGVIKTSPVTDYLAAISVGMDKEEGLLLDLNYEEDSAAEVDMNIIMTGS-GRFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +    + +   + +   +       + +I+   ++
Sbjct: 202 QGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEV 236


>gi|304310165|ref|YP_003809763.1| Ribonuclease PH [gamma proteobacterium HdN1]
 gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1]
          Length = 238

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R I+          GS L   G+T+ I   +      E     L GT R
Sbjct: 1   MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTAS----ATEGVPRFLKGTGR 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +        G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHDRMDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL+D              P+ + +A +++G+       + +
Sbjct: 117 DVIQADGGTRTASITGGCVALVDALSFLLKKGTIKQDPLQRLIASVSVGIY----KGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G+  +Q   +    +   M   ++ A++G   +    
Sbjct: 173 LDLDYPEDSKAETDMNVVMTQHGGLVEVQGTAEAEPFTREQMNAMMELAEKGIGELFLLQ 232

Query: 536 SKVLS 540
            K L+
Sbjct: 233 QKALN 237



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 33/220 (15%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGYLR 79
           ++G+VL  +G T V+ T     S  +G   F        +T  Y     +          
Sbjct: 24  AEGSVLVEFGNTKVICTA----SATEGVPRFLKGTGRGWVTAEYGMLPRSTHDRMDREAS 79

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAA 137
           R  +     + I R+I RS+R          N   V  +V+Q D        S+     A
Sbjct: 80  R-GKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVDCDVIQADGG--TRTASITGGCVA 136

Query: 138 L--MLSGL---------PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQD 183
           L   LS L         P +  +    V    G  VL+   P   + +  +++ ++    
Sbjct: 137 LVDALSFLLKKGTIKQDPLQRLIASVSVGIYKGVPVLDLDYPEDSKAETDMNVVMT-QHG 195

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            ++ V+   EA   + + +   +         +     K 
Sbjct: 196 GLVEVQGTAEAEPFTREQMNAMMELAEKGIGELFLLQQKA 235


>gi|85714061|ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
 gi|85699187|gb|EAQ37055.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
          Length = 237

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS +   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISK-----------PVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D    +              VA I+ G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAWVALADCVNWMKARDMLKASVLRGNVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G I  +Q   +    S++  +  +  AK+G   +++  
Sbjct: 173 LDLDYAEDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KMAVA 237



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ +  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    +     + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  LE----RTRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            L      G V        NG  VL+    ED    
Sbjct: 125 TRTASITGAWVALADCVNWMKARDMLKASVLRGNVAAISCGIYNGTPVLDLDYAEDSEAD 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G +  ++ V+  A ++  S+D  L  +         +++       
Sbjct: 185 TDANFVMTG-EGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
 gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
          Length = 250

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 22/234 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR  + +R IS ++G      GS+L   G T+ +   T+    ++     + G Q 
Sbjct: 2   MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATV----EDGVPAWMRGQQS 57

Query: 372 NDFMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT + +R     PS R     RL  R++   +   A    T+ I  ++
Sbjct: 58  GWVTAEYAMLPRATLQRTRRERNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDV 117

Query: 430 TESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A + G  +AL                P   PVA +++G+++     ++L D
Sbjct: 118 LQADGGTRTAAISGGYVALALAVDYLVRSGVLETRPTLTPVAAVSVGMLQ----GVLLLD 173

Query: 479 ISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +ED    +D  V      G   +Q   +   ++ + +   L  A RG   I
Sbjct: 174 LCYEEDSQADLDCNVVMNSAGGYIEVQATAERSAVTRDQLNALLDLAGRGIQQI 227



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 26/221 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +E G  A  ++G+ L  YG+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 13  RPISIEIGA-APYAEGSALIAYGKTRVLCTATVEDGVPAWMRGQQSGWVTAEYAMLPRA- 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                   R  + P+     I R+I RS+R         E    +  +V+Q D       
Sbjct: 71  --TLQRTRRERNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDVLQADGG--TRT 126

Query: 129 VSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD- 175
            ++     AL L       SG+    P   PV    V  + G  +L+   +ED Q  LD 
Sbjct: 127 AAISGGYVALALAVDYLVRSGVLETRPTLTPVAAVSVGMLQGVLLLDLCYEEDSQADLDC 186

Query: 176 LFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPV 214
             V  +    + V+  A    ++ D +   +       + +
Sbjct: 187 NVVMNSAGGYIEVQATAERSAVTRDQLNALLDLAGRGIQQI 227


>gi|71553993|gb|AAZ33204.1| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 294

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 25/254 (9%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +V + +  R  GR ++ +R I       +   GS L   GDT+ I  V++    +     
Sbjct: 49  SVQVSQMKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPR 104

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            L G  +      Y  LP ATGE ++     G    R +   RL  R++   L  +    
Sbjct: 105 FLKGQGQGWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGD 164

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVK 468
            TL +  ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +
Sbjct: 165 VTLYVDCDVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQ 224

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRG 527
                  + D+   ED     D  V  T   G   +Q   +        +   L  A++G
Sbjct: 225 GEP----VLDLDYPEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKG 280

Query: 528 RLHILNEMSKVLSE 541
              +       L++
Sbjct: 281 MTELFELQRAALAD 294



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 67  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 125

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 126 GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 182

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+   P     +  
Sbjct: 183 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPEDSAAETD 242

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L++ ++ +    + V+  A       + +   +         + E  
Sbjct: 243 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQ 288


>gi|299066246|emb|CBJ37430.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CMR15]
          Length = 238

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDT  +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPK----VPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  RA+  V   +A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  D           AG PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAHDAISVMRKKGQLAGEPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G   +Q   +    +   M   L  A +G   ++   
Sbjct: 173 LDLDYPEDSSCDTDMNVVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           RP+ L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     + 
Sbjct: 12  RPVTL-TRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A             L+G P    V    V  ++G  VL+    ED      +
Sbjct: 128 ASITGAFVAAHDAISVMRKKGQLAGEPIRDFVAAVSVGVVDGVPVLDLDYPEDSSCDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G    V +    E    +   +   +       + +I    + 
Sbjct: 188 NVVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQA 235


>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
          Length = 245

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 7/232 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  + +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  +  +   
Sbjct: 1   ELLTSQGLRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAV-YGPHQASKSKM 59

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S  G         Y+    +TGE        R+        R+A+   +         + 
Sbjct: 60  SNEGVV---VNCQYSMATFSTGERKNRPHGDRKSTEMSLHLRQALTAAIKTELYPRSQID 116

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++DGS     V  ++LAL+DAG+P+    A      +   DD   L D+   E+
Sbjct: 117 VYVEVLQADGSCYCVCVNAATLALIDAGIPLRAY-ACACSASMSWRDDAEPLLDVGHVEE 175

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             G +   VA   S   I  ++M  ++     +I++    Q  R    +L++
Sbjct: 176 AAGGVCLTVASLPSTGRIALLEMSHRLHMDYFDIVLSRAMQGCRDIEVVLDK 227



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF---FPLTVNYQERTYAV 70
           R ++ + G   +Q DG+     G T VLA V         +       +   Y   T++ 
Sbjct: 19  RRIRCKLGVF-KQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVNCQYSMATFST 77

Query: 71  GKIPGGYLRRESRPT--ENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           G+       R++RP        +S  + +++          +++  V + V+Q D     
Sbjct: 78  GE-------RKNRPHGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYVEVLQADGSCY- 129

Query: 127 HVVSMVAASAALMLSGLP 144
             V + AA+ AL+ +G+P
Sbjct: 130 -CVCVNAATLALIDAGIP 146


>gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
 gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
          Length = 238

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R I      ++   GS L   G+T+ I   ++     E     L GT  
Sbjct: 1   MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASIT----EGVPPFLKGTGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  S R     RL  RA+  V+  +     T+ I  
Sbjct: 57  GWITAEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL  A             PI   VA +++G++ D     ++
Sbjct: 117 DVIQADGGTRTASISGGFVALYSAFEKLVKSGELEKNPIKNFVAAVSVGVLNDD----VI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  TDSG I  +Q   +    S +++   +  A  G  +I+   
Sbjct: 173 LDLNYEEDSTARVDMNVVATDSGEIIEIQGTGEESPFSRDVLNKMIDYAFIGINNIIEAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 KKA 235



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T  I +  +G+VL  +GET V+        +     G     +T  Y     A 
Sbjct: 12  RLIKITTDYI-KYPEGSVLIEFGETKVICNASITEGVPPFLKGTGTGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + + +     ISR+I R++R +       E  V+   +V+Q D       
Sbjct: 71  -HTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S+     AL            L   P +  V    V  +N   +L+   +ED    +D+
Sbjct: 128 ASISGGFVALYSAFEKLVKSGELEKNPIKNFVAAVSVGVLNDDVILDLNYEEDSTARVDM 187

Query: 177 FVSGTQDA-VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  T    ++ ++    +   S DV+   I +       +IEA  K 
Sbjct: 188 NVVATDSGEIIEIQGTGEESPFSRDVLNKMIDYAFIGINNIIEAQKKA 235


>gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 257

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I           GS L   G+T+ IV  ++    +++    L G+ +
Sbjct: 1   MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASI----EDKVPPFLKGSGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P A+   S      G+PS R     RL  R++   +        T+ I  
Sbjct: 57  GWITAEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG + +A++ G+ +A+ DA +           P+   VA I++G V +     I+
Sbjct: 117 DVIQADGGTRVASITGAFIAVADALIKLEKNNLVKSNPLKDYVAAISVGKVNNE----IV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T  G    +    +    +   +   ++  K G   ++   
Sbjct: 173 LDLNYQEDSKAQVDMNIVMTGKGEFVELGATGEENTFTYQELQKMIEYGKSGIERLIKIQ 232

Query: 536 SK 537
            +
Sbjct: 233 KE 234



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 83/217 (38%), Gaps = 23/217 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T V+ T   +  +     G     +T  Y     A        + R   
Sbjct: 24  AEGSVLIEFGNTKVIVTASIEDKVPPFLKGSGQGWITAEYSMIPRASETRSLREVVR-GS 82

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           P+     I R+I RS+R      K  +    +  +V+Q D      V S+  A  A+  +
Sbjct: 83  PSGRTHEIQRLIGRSLRAAVDLKKLGERTIWIDCDVIQADGG--TRVASITGAFIAVADA 140

Query: 142 GL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
            +           P +  V    V  +N + VL+    ED   Q  +++ ++G  + V L
Sbjct: 141 LIKLEKNNLVKSNPLKDYVAAISVGKVNNEIVLDLNYQEDSKAQVDMNIVMTGKGEFVEL 200

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
               E N  +   +   I +G +  + +I+   +  +
Sbjct: 201 GATGEENTFTYQELQKMIEYGKSGIERLIKIQKEFIE 237


>gi|254472318|ref|ZP_05085718.1| ribonuclease PH [Pseudovibrio sp. JE062]
 gi|211958601|gb|EEA93801.1| ribonuclease PH [Pseudovibrio sp. JE062]
          Length = 239

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 25/241 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R  E +R +S + G+ +   GS L   GDT  +   +L    +E+    L G  R 
Sbjct: 3   RPSKRTPEEMRPVSLERGVAKHAEGSCLIKFGDTHVLCTASL----EERVPPWLRGQNRG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT +  R     G  S R     RL  R++  V+   A     + +  +
Sbjct: 59  WVTAEYGMLPRATHDRMRRESSAGKQSGRTQEIQRLIGRSLRAVVDLGALGERQITVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A++ G+ +AL D    +           +   +A I+ G+     +   +
Sbjct: 119 VIQADGGTRTASITGAWVALHDCLKWMEARDMVKTDKVLKDHIAAISCGIY----EGTPV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D     T   GI  +Q   +    SE  +   +  AK+    ++   
Sbjct: 175 ADLDYAEDSSADTDANFVMTGKGGIVEIQGTAEGEPFSEEELGQLMGLAKQSISKLVELQ 234

Query: 536 S 536
            
Sbjct: 235 K 235



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 33/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE G +A+ ++G+ L  +G+T VL T   +  +     GQ+   +T  Y     A 
Sbjct: 13  RPVSLERG-VAKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGQNRGWVTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 72  HD----RMRRESSAGKQSGRTQEIQRLIGRSLRAVVDLGALGERQITVDCDVIQADGG-- 125

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG- 172
               S+  A  AL              +    +  +         G  V +    ED   
Sbjct: 126 TRTASITGAWVALHDCLKWMEARDMVKTDKVLKDHIAAISCGIYEGTPVADLDYAEDSSA 185

Query: 173 --SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
               +  ++G +  ++ ++   E    SE+ +   +         ++E   
Sbjct: 186 DTDANFVMTG-KGGIVEIQGTAEGEPFSEEELGQLMGLAKQSISKLVELQK 235


>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
          Length = 233

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 13/233 (5%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + + +R DGR    +R I  + G+L+R  GS+    G  + + V   G RE   Y+  L 
Sbjct: 1   MSEMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKIL-VAVYGPRES--YIRRLL 57

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                     YN  P +  +  R G P RR     ++   A+ P L         + I  
Sbjct: 58  EPNTGVIRCRYNMAPFSVDDRKRPG-PDRRSSEISKITADALRPALMLENYPRSMVDIYI 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E++G +  A +  +S+AL+DAG+P+   V G A G V D     I+ D+S  ED  G
Sbjct: 117 EVIEAEGGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDK----IVLDLSEVEDKEG 172

Query: 488 HMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             D  +A       IT +Q D   G +S+     A+  A  G   +     + 
Sbjct: 173 QADVPIAMMPRTGEITLLQSD---GDLSQEEFEEAINLAMEGCRKVNEIQKEA 222



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 17/216 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + R +DG+     G   +L  V   R     +   P    +   Y    ++
Sbjct: 16  RPIKIEAGVLER-ADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVIRCRYNMAPFS 74

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V        R+   P      IS++   ++RP  +     ++   + I V++   E    
Sbjct: 75  VDD------RKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEA--EGGTR 126

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS-GTQDAV 185
              + AAS AL+ +G+P +  VVG     +N + VL+   +++ +G  D+ ++   +   
Sbjct: 127 CAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPRTGE 186

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + +      LS++   +AI      C+ V E   + 
Sbjct: 187 ITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEA 222


>gi|89098915|ref|ZP_01171795.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
 gi|89086319|gb|EAR65440.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
          Length = 277

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 109/247 (44%), Gaps = 23/247 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R DGR+   +R I  +   L    GS L   G+T+ I   ++    DE+    + G  
Sbjct: 30  NMRKDGREQLQLRPIHIETNYLMHPEGSVLISVGNTKVICTASI----DERVPPFMRGEG 85

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y+ LP AT + +      G  + R +   RL  RA+  V+   A    T+ + 
Sbjct: 86  KGWITAEYSMLPRATEQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLD 145

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A+             +  PI++ +A  ++G++++     +
Sbjct: 146 CDVIQADGGTRTASITGAFVAMAIAVEKLYSNKKLSKFPITQFLAATSVGILENKQ---V 202

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D++  ED    +D  V  T +G    +Q   +    S + +   L+ A+ G   + + 
Sbjct: 203 VLDLNYAEDSKAEVDMNVVMTGNGEFVELQGTGEEATFSASQLTELLKAAEEGVGRLFDI 262

Query: 535 MSKVLSE 541
             +VL E
Sbjct: 263 QKQVLGE 269



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 32/241 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ET  +    +G+VL + G T V+ T   D  +     G+    +T  Y     A 
Sbjct: 42  RPIHIETNYL-MHPEGSVLISVGNTKVICTASIDERVPPFMRGEGKGWITAEYSMLPRAT 100

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E  +    +V+Q D       
Sbjct: 101 -EQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQADGG--TRT 157

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVD-YINGQYVLNPRLDED---QGS 173
            S+  A  A+ +           S  P    +    V    N Q VL+    ED   +  
Sbjct: 158 ASITGAFVAMAIAVEKLYSNKKLSKFPITQFLAATSVGILENKQVVLDLNYAEDSKAEVD 217

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI-----SKLAKMCA 226
           +++ ++G  + V  ++    + +     + + +         + +        K++    
Sbjct: 218 MNVVMTGNGEFV-ELQGTGEEATFSASQLTELLKAAEEGVGRLFDIQKQVLGEKISSQIG 276

Query: 227 K 227
           K
Sbjct: 277 K 277


>gi|71909462|ref|YP_287049.1| ribonuclease PH [Dechloromonas aromatica RCB]
 gi|123626372|sp|Q479A2|RNPH_DECAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71849083|gb|AAZ48579.1| RNAse PH [Dechloromonas aromatica RCB]
          Length = 238

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +       +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPSQRQPDQLRTVRITRNFTRHAEGSVLIEMGDTRVLCTASV----EENVPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  RA+  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL +A             P+   VA I++G+         +
Sbjct: 117 DVLQADGGTRCASITGAWVALYEACDKLVQAGKLPANPVRDHVAAISVGIY----KGAPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   GI  +Q   +    +   M + +  A  G  H++   
Sbjct: 173 LDLDYPEDSDCDTDMNVVMTGAGGIVEIQGTAEGEPFTREQMSVLVDLATLGVRHLVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 QSA 235



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    R ++G+VL   G+T VL T   + ++     G+    +T  Y     A 
Sbjct: 12  RTVRI-TRNFTRHAEGSVLIEMGDTRVLCTASVEENVPPFLRGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + + T     I R+I R++R +       E Q+    +V+Q D       
Sbjct: 71  -HTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDCDVLQADGG--TRC 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL            L   P    V    V    G  VL+   P   +    +
Sbjct: 128 ASITGAWVALYEACDKLVQAGKLPANPVRDHVAAISVGIYKGAPVLDLDYPEDSDCDTDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++G    ++ ++   E    + + +   +       + ++ A       
Sbjct: 188 NVVMTG-AGGIVEIQGTAEGEPFTREQMSVLVDLATLGVRHLVAAQQSALAA 238


>gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp]
 gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp]
          Length = 239

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++ +         L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESG----VPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D            G P+ + +A +++G+ +       +
Sbjct: 118 DVIQADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQGEP----V 173

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+  G   +Q   +            L  A++G   I    
Sbjct: 174 LDLDYLEDSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQ 233

Query: 536 SKV 538
              
Sbjct: 234 KAA 236



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV V     +   GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R     SK  +N   V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            L G P +  +    V    G+ VL+    ED   +  L
Sbjct: 129 ASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQGEPVLDLDYLEDSAAETDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++      + V+  A       +     +         + E   
Sbjct: 189 NVVMT-NAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQK 234


>gi|205354664|ref|YP_002228465.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|226736934|sp|B5RG80|RNPH_SALG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|205274445|emb|CAR39477.1| RNase PH [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326629803|gb|EGE36146.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 238

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLSLARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V  T+D  ++ V+   E    S + +L  +       + ++       +
Sbjct: 188 NVVMTEDGRIIEVQGTAEGEPFSHEELLTLLSLARGGIESIVATQKAALE 237


>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
 gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
          Length = 239

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR    +R +      L+   GS+L   G+T+ +   T+    +E       GT  
Sbjct: 2   PRPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATV----EEGVPRWRRGTGE 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  V+   A   YT+ +  
Sbjct: 58  GWVTAEYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P++  VA +++G+V+        
Sbjct: 118 DVLQADGGTRTAAITGAYVALVDAVRYLRKQLDLKTNPLTGSVAAVSVGIVQGQPR---- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED +   D  V  T +G    +Q   +       ++   L  A  G   +    
Sbjct: 174 LDLNYLEDSVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQ 233

Query: 536 SKVLSE 541
            K LSE
Sbjct: 234 KKALSE 239



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++    + R ++G+ L  +GET VL     +  +   + G     +T  Y     A 
Sbjct: 13  RPVRITRNWL-RHAEGSALIEFGETRVLCAATVEEGVPRWRRGTGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +       ISR+I RS+R +       E  +    +V+Q D       
Sbjct: 72  -DTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+           L   P  G V    V  + GQ  L+    ED   +  +
Sbjct: 129 AAITGAYVALVDAVRYLRKQLDLKTNPLTGSVAAVSVGIVQGQPRLDLNYLEDSVAETDM 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ V+GT + +  ++  A        ++   +      C  + E   K 
Sbjct: 189 NVVVTGTGEFI-EIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQKKA 236


>gi|241663552|ref|YP_002981912.1| ribonuclease PH [Ralstonia pickettii 12D]
 gi|240865579|gb|ACS63240.1| ribonuclease PH [Ralstonia pickettii 12D]
          Length = 238

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDTQ +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRNFTRHAEGSVLVCFGDTQVLCTASVLPK----VPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  + R     RL  RA+  V    A   +TL +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  DA           G PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAYDAVSVMREKGQLVGNPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    S   M   L  A +G   ++   
Sbjct: 173 LDLDYPEDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDALLGLADQGIRTLIGLQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           RP+ L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     + 
Sbjct: 12  RPVTL-TRNFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + T     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A   +           G P    V    V  ++G  VL+    ED      +
Sbjct: 128 ASITGAFVAAYDAVSVMREKGQLVGNPIRDFVAAVSVGVVDGVPVLDLDYPEDSACDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    S   +   +       + +I    + 
Sbjct: 188 NVVMTGSGGFVEVQGTAEGTPFSRAEMDALLGLADQGIRTLIGLQKQA 235


>gi|90420650|ref|ZP_01228556.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
 gi|90334941|gb|EAS48702.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
          Length = 241

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 95/248 (38%), Gaps = 25/248 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S +    +   GS L   GDT  +   +L    +E+    L  + +
Sbjct: 1   MRPSKRAFDELRPVSLERNYSRHAEGSCLVRFGDTHVLCTASL----EERVPGWLKNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+  R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGDRMRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA---------GVP---ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G  +AL D            P   +   VA I+ G+ K       
Sbjct: 117 DVIQADGGTRTAAITGGYVALADCLAWMGQRAMVDPAKVLKDHVAAISCGIYKGEP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    S++  +  L  A++G   ++  
Sbjct: 173 VLDLDYPEDSAAETDANFVMTGAGGIVEIQGTAEGTPFSQDEFLKLLDLARKGINDLVGM 232

Query: 535 MSKVLSES 542
             + +  +
Sbjct: 233 QRQAIEAA 240



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 31/236 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ LE    +R ++G+ L  +G+T VL T   +  +           +T  Y     A 
Sbjct: 12  RPVSLERN-YSRHAEGSCLVRFGDTHVLCTASLEERVPGWLKNSGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL--- 122
           G      +RRE    + +     I R++ RS+R +       E Q+    +V+Q D    
Sbjct: 71  GDR----MRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDCDVIQADGGTR 126

Query: 123 --------ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
                    +    ++ +    A++      +  V         G+ VL+   P     +
Sbjct: 127 TAAITGGYVALADCLAWMG-QRAMVDPAKVLKDHVAAISCGIYKGEPVLDLDYPEDSAAE 185

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
              +  ++G    ++ ++   E    S+D  L  +         ++    +  +  
Sbjct: 186 TDANFVMTG-AGGIVEIQGTAEGTPFSQDEFLKLLDLARKGINDLVGMQRQAIEAA 240


>gi|251798434|ref|YP_003013165.1| ribonuclease PH [Paenibacillus sp. JDR-2]
 gi|247546060|gb|ACT03079.1| ribonuclease PH [Paenibacillus sp. JDR-2]
          Length = 245

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 24/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R ++   G+ +   GS L   G+T+ I   ++    +E+    + G  +
Sbjct: 1   MRTDGRQPNQLRPVTITTGVNKYAEGSVLIEVGETKVICTASV----EERVPPFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  S R +   RL  RA+  ++   A    T+ +  
Sbjct: 57  GWITAEYSMLPRATHSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL  A             PI+  +A +++G++++ +    L
Sbjct: 117 DVIQADGGTRTTSITGAFVALCLAVNKLSKTTQFPKYPITAFLASVSVGVIQERE----L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ DED    +D  V  T  G    +Q   +    S   +   L+ A+ G   ++ + 
Sbjct: 173 LDLNYDEDSKAKVDMNVVMTGEGKFVELQGTGEDSPFSREELNKLLELAEGGIEELIEKQ 232

Query: 536 SKVLSESRLQL 546
            + L E   ++
Sbjct: 233 REALGEIADRI 243



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + TG + + ++G+VL   GET V+ T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTITTG-VNKYAEGSVLIEVGETKVICTASVEERVPPFMKGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + + +   + I R+I R++R +       E  +    +V+Q D       
Sbjct: 71  -HSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL L+             P    +    V  I  + +L+   DED   +  +
Sbjct: 128 TSITGAFVALCLAVNKLSKTTQFPKYPITAFLASVSVGVIQERELLDLNYDEDSKAKVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++ ++G +   + ++        S + +   +       + +IE   +     A
Sbjct: 188 NVVMTG-EGKFVELQGTGEDSPFSREELNKLLELAEGGIEELIEKQREALGEIA 240


>gi|84684654|ref|ZP_01012555.1| ribonuclease PH [Maritimibacter alkaliphilus HTCC2654]
 gi|84667633|gb|EAQ14102.1| ribonuclease PH [Rhodobacterales bacterium HTCC2654]
          Length = 250

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+ + +R IS + G+ +   GS L   GDT  +   +L    +E+    L  T  
Sbjct: 14  MRPSGRNVDELRPISIETGVTKHAEGSCLIKVGDTHVLCTASL----EERVPPWLRNTGM 69

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++   + + A     + +  
Sbjct: 70  GWVTAEYGMLPRSTSSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDC 129

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 130 DVIQADGGTRCASITGGWVALRLAVQKLMKAGDIVSDPLIDPVAAVSCGIYAGQP----V 185

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T +G +  +QM  +    S   M   +  A++G   ++   
Sbjct: 186 LDLDYPEDSEAGVDGNFVMTGTGRLIEVQMSAEGSTFSRAQMDDLMGLAEKGVAELVAAQ 245

Query: 536 SKVLS 540
              ++
Sbjct: 246 KAAVA 250



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 83/233 (35%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           RP+ +ETG + + ++G+ L   G+T VL T   +  +        +   T  Y     + 
Sbjct: 25  RPISIETG-VTKHAEGSCLIKVGDTHVLCTASLEERVPPWLRNTGMGWVTAEYGMLPRST 83

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 84  S----SRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDCDVIQADGG-- 137

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 138 TRCASITGGWVALRLAVQKLMKAGDIVSDPLIDPVAAVSCGIYAGQPVLDLDYPEDSEAG 197

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++GT   + + +  E +  S   + D +         ++ A      
Sbjct: 198 VDGNFVMTGTGRLIEVQMSAEGSTFSRAQMDDLMGLAEKGVAELVAAQKAAVA 250


>gi|291612874|ref|YP_003523031.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
 gi|291582986|gb|ADE10644.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
          Length = 238

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R I       +   GS L   GDT+ I   ++    +E+      G+  
Sbjct: 1   MRPSQRKHDQLRAIRITRHYTKHAEGSVLIECGDTKVICTASV----EERVPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE        G  S R     RL  R++  V+        T+ +  
Sbjct: 57  GWVTAEYGMLPRSTGERMSREAAKGKQSGRTQEIQRLIGRSLRAVVDLGKLGERTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+ +     I +
Sbjct: 117 DVIQADGGTRTASITGAFVALSDAVAALMQQGLVKENPLKHAVAAISVGIYQ----GIPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V    +G    +Q   +    S   M   L+ AK G   ++   
Sbjct: 173 LDLDYLEDSDCDTDMNVVMLGNGHFVEVQGTAEGHAFSREEMDTLLELAKHGITQLVAMQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 QKA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 20/226 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL   G+T V+ T   +  +     G     +T  Y     + 
Sbjct: 12  RAIRI-TRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL-----E 123
           G+        + + +     I R+I RS+R +       E  V    +V+Q D       
Sbjct: 71  GE-RMSREAAKGKQSGRTQEIQRLIGRSLRAVVDLGKLGERTVTLDCDVIQADGGTRTAS 129

Query: 124 SSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
            +   V++  A AALM  GL    P +  V    V    G  VL+    ED      +++
Sbjct: 130 ITGAFVALSDAVAALMQQGLVKENPLKHAVAAISVGIYQGIPVLDLDYLEDSDCDTDMNV 189

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            + G    V +    E +  S + +   +    +    ++    K 
Sbjct: 190 VMLGNGHFVEVQGTAEGHAFSREEMDTLLELAKHGITQLVAMQQKA 235


>gi|222084657|ref|YP_002543186.1| ribonuclease PH [Agrobacterium radiobacter K84]
 gi|254808098|sp|B9J7T9|RNPH_AGRRK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221722105|gb|ACM25261.1| ribonuclease PH [Agrobacterium radiobacter K84]
          Length = 238

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +E+    L  + +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +     G    R     RL  R++  V+         + I  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D                +   +A I+ G+         
Sbjct: 117 DVIQADGGTRTASITGAWIALYDCLKWMESRNMIKVERVLKDHIAAISCGIFASQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE      +  AK G   ++  
Sbjct: 173 VIDLDYLEDSSAETDANFVMTGKGGIVEIQGTAEGTPFSEEEFTTLMHLAKNGIAELVEL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     A 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML--------SGLPFE----GPVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL          + +  E      +          Q V++    ED   
Sbjct: 125 TRTASITGAWIALYDCLKWMESRNMIKVERVLKDHIAAISCGIFASQPVIDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G +  ++ ++   E    SE+     +    N    ++E   +   
Sbjct: 185 ETDANFVMTG-KGGIVEIQGTAEGTPFSEEEFTTLMHLAKNGIAELVELQKQAIA 238


>gi|303231308|ref|ZP_07318044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514038|gb|EFL56044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
          Length = 257

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 22/254 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    +E     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATI----EENVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T       +  G  + R +   RL  RA+  V+   A    ++ +  
Sbjct: 57  GWVTAEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD---------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+D            PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAIDFTFGGFGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T +G +  +Q   + G  S + +   L  A+     ++     
Sbjct: 173 LCYEEDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRN 232

Query: 538 VLSESRLQLGEFTP 551
           VL     ++G+  P
Sbjct: 233 VLGSVADKIGKVYP 246



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 22/223 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL   G+T V+ T   + ++     G     +T  Y     + 
Sbjct: 12  RPIKI-TRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSGQGWVTAEYSLLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            K          + T   + I R+I R++R +       E    V  +V+Q D       
Sbjct: 71  -KTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
            S+  A  AL+ +           P         V       + +   +ED      +++
Sbjct: 128 ASITGAFVALVDAIDFTFGGFGKFPITDFCAAISVGIGPEGPITDLCYEEDSAAVVDMNV 187

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
             +G  + + +    E    S D +   +    +    ++   
Sbjct: 188 VRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQ 230


>gi|299772068|ref|YP_003734094.1| ribonuclease PH [Acinetobacter sp. DR1]
 gi|298702156|gb|ADI92721.1| ribonuclease PH [Acinetobacter sp. DR1]
          Length = 238

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +  G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTASITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNDMLEMAEKGIAELIKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     G+    +T  Y     + 
Sbjct: 12  REVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             +      R   + +     I R+I RS+R +    K  +N   +  +V+Q D      
Sbjct: 71  HSRCDREAAR--GKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A+ AL+           +   P +G V    V     + +L+   +ED   Q  
Sbjct: 127 TASITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           L++ ++   + + +    E    +     D +         +I+   + 
Sbjct: 187 LNVVMTQAGEFIEIQGTAEDKPFTRAQSNDMLEMAEKGIAELIKKQQEA 235


>gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4]
 gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4]
          Length = 258

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R +    G  +   GS L   GDT+ +   ++    D++    L GT +
Sbjct: 1   MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASI----DDKVPSFLKGTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G PS R +   RL  R++   +   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRATESRNLREVTKGRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL               +P+   VA +++G VKD      L
Sbjct: 117 DVLQADGGTRTAAITGGFVALVYALDWLRNEGAIESLPVKDLVAAVSVGKVKD----AYL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED +  +D  V  T  G +  +Q   +    +   + + L  A +G   ++ + 
Sbjct: 173 LDLTFAEDSMAEVDLNVVMTGKGELVEVQGTAEGKPFTREELNLMLDLAAQGVSVLIAKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+  G  ++ ++G+ L   G+T VL T   D  +     G     +T  Y     A 
Sbjct: 12  RPVKIIPG-YSKYAEGSCLIEMGDTRVLCTASIDDKVPSFLKGTGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                  + +  RP+   + I R+I RS+R         E  +I   +V+Q D       
Sbjct: 71  ESRNLREVTK-GRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++     AL            +  LP +  V    V  +   Y+L+    ED   +  L
Sbjct: 128 AAITGGFVALVYALDWLRNEGAIESLPVKDLVAAVSVGKVKDAYLLDLTFAEDSMAEVDL 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G  + V +    E    + + +   +         +I    + 
Sbjct: 188 NVVMTGKGELVEVQGTAEGKPFTREELNLMLDLAAQGVSVLIAKQREA 235


>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
           639]
 gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
 gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
          Length = 243

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 116/241 (48%), Gaps = 9/241 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++L+  +R DGR  + +R I  ++G+L+   GS++F  G+T+ I  V  G +E   +  
Sbjct: 8   KLILENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAV-YGPKEM--HPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+   +    + Y+  P +T E     APSRREI   ++ R A+   +         + 
Sbjct: 65  HLALPDKASLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESTILLNLFPRTVID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++D  + +  +  +S+AL DAG+P+   +AG+A+G      D  ++ D++  ED
Sbjct: 124 IFMEVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVGKA----DGSLVLDLNEQED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  +A   S +  + +    G ++ +    A + A++G   I     + L    L
Sbjct: 180 MWGEADMPIAVLPS-LGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALKNKYL 238

Query: 545 Q 545
           +
Sbjct: 239 E 239



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+ +   G T V+A V   + +       P    L V Y    ++
Sbjct: 26  RPIKIELGVL-KNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLRVRYHMTPFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++    L +   +    + + V+Q D      
Sbjct: 85  TDE------RKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +V+++AAS AL  +G+P    + G  V   +G  VL+    ED   +  + + V  +   
Sbjct: 137 LVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLPSLGQ 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V++++L    ++ D    A          +     +  K
Sbjct: 197 VVLLQLNG-FMTPDEFRRAFELAQKGISSIYALQKEALK 234


>gi|257869443|ref|ZP_05649096.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
 gi|257803607|gb|EEV32429.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
          Length = 450

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 141/357 (39%), Gaps = 47/357 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR + ++R +  +  + +   GS +   GDT  I   T+    +++    L  + +
Sbjct: 1   MRHDGRKAGSIRPVEIKTNVFKHPEGSVVISFGDTTVICSATI----EDRVPPFLRDSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL                PI + +A I++G++ D      +
Sbjct: 117 DVIQADGGTRTASITGAFVALRLAIDQLLTNHELTEDPIKEHLAAISVGILPDN---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+  +ED    +D  +  T+SG    I     +    G   N M++  + A    +   
Sbjct: 174 TDLDYEEDSAAAVDMNLVMTESGRFIEIQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN---VIGMGGKVIRGIVEQTGAKVNIDD 589
            E   +  + +  + E T  +      P + R    V G  G  +R + +      ++++
Sbjct: 234 KEALLIQEQPQYVIPEKTIVIATG--NPGKAREFTAVFGAAGYDVRTLKDYPALP-DVEE 290

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            GT    ++ L     A+ +               G+ V   D G  V   G R G+
Sbjct: 291 TGTTFEENARLKAETIAKIL---------------GRPVLADDSGLKVDALGGRPGV 332



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 93/247 (37%), Gaps = 33/247 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP++++T    +  +G+V+ ++G+T V+ +   +  +           +T  Y     A 
Sbjct: 12  RPVEIKTNVF-KHPEGSVVISFGDTTVICSATIEDRVPPFLRDSGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  N----TRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG- 172
               S+  A  AL L+             P +  +    V    +   V +   +ED   
Sbjct: 125 TRTASITGAFVALRLAIDQLLTNHELTEDPIKEHLAAISVGILPDNTCVTDLDYEEDSAA 184

Query: 173 --SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
              ++L ++ +   +  ++    + +     + + +I+G    + +I    +   +  + 
Sbjct: 185 AVDMNLVMTESGRFI-EIQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEALLIQEQP 243

Query: 229 PIVIDSK 235
             VI  K
Sbjct: 244 QYVIPEK 250


>gi|71066420|ref|YP_265147.1| ribonuclease PH [Psychrobacter arcticus 273-4]
 gi|123647900|sp|Q4FQJ5|RNPH_PSYA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71039405|gb|AAZ19713.1| RNAse PH [Psychrobacter arcticus 273-4]
          Length = 238

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+   +R IS +    +   GS L   GDT+ +   ++ +         L G  +
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESG----VPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R     RL  R++  ++  +     T+ +  
Sbjct: 57  GWITAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A+V G+++AL+D              P+   VA +++G +KDG+ +   
Sbjct: 117 DVLQADGGTRTASVTGAAIALIDALESIQKTKKLKADPLIGLVAAVSVG-MKDGEAY--- 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED     D  V  T  G    +Q   +    +       L  A++G   ++   
Sbjct: 173 LDLNYEEDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLVLAEKGIAELIAMQ 232

Query: 536 SKV 538
              
Sbjct: 233 KTA 235



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           R +  E     + ++G+VL ++G+T VL T  V     +   G+    +T  Y     A 
Sbjct: 12  RSISFER-HYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  N-TRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL 176
            S+  A+ AL   L  +         P  G V    V   +G+  L+   +ED     DL
Sbjct: 128 ASVTGAAIALIDALESIQKTKKLKADPLIGLVAAVSVGMKDGEAYLDLNYEEDASCDTDL 187

Query: 177 FVSGT-QDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
            V  T +   + ++  A +   +     D ++        +I    
Sbjct: 188 NVVMTQKGEFIELQGTAEEKPFTRAQADDMLVLAEKGIAELIAMQK 233


>gi|315150398|gb|EFT94414.1| ribonuclease PH [Enterococcus faecalis TX0012]
          Length = 451

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNTMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNTMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|322513841|ref|ZP_08066923.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
 gi|322120328|gb|EFX92267.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
          Length = 238

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+   VR +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTAAITGACVALHDAMSKLVADSVLKENPMKGLVAAISVGIV----DGNAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A +G   +L+  
Sbjct: 173 CDLEYVEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPVKI-TRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               ++  A  AL            L   P +G V    V  ++G  V +    ++    
Sbjct: 125 TRTAAITGACVALHDAMSKLVADSVLKENPMKGLVAAISVGIVDGNAVCDLEYVEDSNAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKL 221
            D+ V   +D  L VE++     E      +L  +   H     +++A  K 
Sbjct: 185 TDMNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKA 235


>gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
          Length = 245

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+  +  +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV----EDRVPPFLRGGGK 56

Query: 372 NDFMMHYNFLPCATGE----VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA+                PI+  +A I++G+ K+     IL
Sbjct: 117 DVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQG---IL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG    +Q   +    S   +   L  A++G   ++++ 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233

Query: 536 SKVLSESRLQLG 547
            +VL +S  +L 
Sbjct: 234 KEVLGDSLPELK 245



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 29/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  +   I+   +G+VL T G T V+     +  +     G     +T  Y     A 
Sbjct: 12  RPITFDLDFISH-PEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +        + + +   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  NQ-QTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQG--- 172
            S+  A  A+ ++             P    +    V  I+ +   +L+   +ED     
Sbjct: 128 ASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVG-IDKEQGILLDLNYEEDSSAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            +++ ++G+    + ++    + +   + +   +       + +I+   ++
Sbjct: 187 DMNVIMTGS-GRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEV 236


>gi|320539880|ref|ZP_08039539.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
 gi|320030066|gb|EFW12086.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
          Length = 238

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPVGRAPQHVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYSMLPRSTHSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G++        L
Sbjct: 117 DVLQADGGTRTASITGACVALIDALNALVANGKLKANPMKGLVAAVSVGILNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S + ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELMALLTLARGGIETIFQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 24/232 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYSMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL-----E 123
                     + +     + I R+I RS+R         E  +I   +V+Q D       
Sbjct: 71  -HSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDCDVLQADGGTRTAS 129

Query: 124 SSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
            +   V+++ A  AL+ +G     P +G V    V  +NG+ + +    ED   +  +++
Sbjct: 130 ITGACVALIDALNALVANGKLKANPMKGLVAAVSVGILNGEALCDLEYVEDSAAETDMNV 189

Query: 177 FVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            +      ++ V+   E    S D ++  +       + + +A    A +  
Sbjct: 190 VM-MEDGRMIEVQGTAEGEPFSHDELMALLTLARGGIETIFQAQK--AALAG 238


>gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 259

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+DGRDS ++R I       +   GS L   G+T+ I   ++    +++      GT +
Sbjct: 2   KRVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASI----EDKVPPFQKGTGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT   ++     G  S R +   RL  RA+  V+   A    T+ I  
Sbjct: 58  GWITSEYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL+D           + +PI   VA +++G+V +      L
Sbjct: 118 DVIQADGGTRTASITGSFVALVDAMNKLKEKGAISKLPIKSFVAAVSVGIVGNEK----L 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   H+D  +  TD G    +Q   + G  S++     L+ A+ G   I+   
Sbjct: 174 LDLCYLEDSNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKSDFSELLELAEEGLNKIIQVQ 233

Query: 536 SKVLSESRLQL 546
            + L +  L++
Sbjct: 234 KESLGDISLEI 244



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    R ++G+VL   G T V+ T   +  +   Q       +T  Y     A 
Sbjct: 13  RPIKI-TRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITSEYSMIPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + +   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 72  -ETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  +  AL            +S LP +  V    V  +  + +L+    ED      +
Sbjct: 129 ASITGSFVALVDAMNKLKEKGAISKLPIKSFVAAVSVGIVGNEKLLDLCYLEDSNAHVDM 188

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++ ++   + + +    E    S+    + +         +I+   +
Sbjct: 189 NIVMTDKGEFIEIQGTGEGGPFSKSDFSELLELAEEGLNKIIQVQKE 235


>gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 242

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 24/239 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I    G      GS L   G+T+ +   +     ++        +   
Sbjct: 6   RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTAS----AEQGVPRFKKDSGEG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E        G    R     RL  R++   +  T     T+ I  +
Sbjct: 62  WLTAEYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  P+A +++G++    D  +  
Sbjct: 122 VLQADGGTRTASITGAYIALADAIAHLTAQGVVPGNPLLPPIAAVSVGII----DGHVCL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           D+  +ED    +D  V  T  G    +Q   +    S   +   L  A++G   ++   
Sbjct: 178 DLPYEEDSRADVDLNVIMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCKELIEAQ 236



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 26/226 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++  G       G+VL  YG T V+ T   ++ +   K       LT  Y     A 
Sbjct: 16  RPIRITRG-FTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTAEYAMLPAAT 74

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
             ++P   +R   +       ISR++ RS+R          N   +  +V+Q D      
Sbjct: 75  HERMPRESMR--GKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQADGG--TR 130

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
             S+  A  AL  +           G P   P+    V  I+G   L+ P  ++ +  +D
Sbjct: 131 TASITGAYIALADAIAHLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEEDSRADVD 190

Query: 176 LFVSGTQD-AVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L V  TQ+   + ++  A   +   + +   + +    CK +IEA 
Sbjct: 191 LNVIMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCKELIEAQ 236


>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
 gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
          Length = 242

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +     +  +
Sbjct: 8   TGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQV-NS 65

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                   Y     +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 66  NEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G  
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTP----LLDLNYLEDSAGGS 181

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNE 534
           D  V        +T +QMD K+   +   +M +A++  K    +I   
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIATYIREV 229



 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 15/216 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++       +   +   Y+   +
Sbjct: 21  RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALVRCEYRMAEF 79

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G       RR+ +       IS +I +++           +Q+ I V     +     
Sbjct: 80  STGD-----RRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQVLQADGGTRS 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS--GTQDAV 185
             + AA+ AL  +G+P    V      Y+    +L+    ++  G  D+ V      D V
Sbjct: 135 ACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAKMDKV 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++++A  L  D   + +      CK +   I ++
Sbjct: 195 TLLQMDAK-LPMDTFENVMGLAIEGCKAIATYIREV 229


>gi|255320662|ref|ZP_05361839.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262380705|ref|ZP_06073858.1| ribonuclease PH [Acinetobacter radioresistens SH164]
 gi|255302278|gb|EET81518.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262297653|gb|EEY85569.1| ribonuclease PH [Acinetobacter radioresistens SH164]
          Length = 238

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R    +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALNQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLERKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQCNAMLELAEQGISELIKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  RDVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A+ AL+           +   P +G V    V     + +L+   +ED   Q  L
Sbjct: 128 AAITGAAVALVDAMNVLLERKKIKHDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTDL 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + + +    E    +       +         +I+   + 
Sbjct: 188 NVVMTQAGEFIEIQGTAEDKPFTRAQCNAMLELAEQGISELIKKQQEA 235


>gi|227115107|ref|ZP_03828763.1| ribonuclease PH [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 238

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   +A +++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVAKGKLKKNPMKGMIAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S + ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLTLLALARGGIDTIVQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL   T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTF-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G +    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNQMVAKGKLKKNPMKGMIAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAIS 219
            V  T+D  + +E++     E    D +L  +         +++A  
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGEPFSHDELLTLLALARGGIDTIVQAQK 233


>gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614]
 gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614]
          Length = 237

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G  R
Sbjct: 1   MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQNR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+  R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D            G  +   +A I+ G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAWVALRDCIEWMKARDMVSGEVLKDHIAAISCGIY----EGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +    SE      +  AK G   +++  
Sbjct: 173 LDLDYAEDSTAETDANFVLTGAGGIVEIQGTAEGAPFSEEEFGKLMGLAKLGIGKLVDLQ 232

Query: 536 SKV 538
              
Sbjct: 233 KMA 235



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G +++ ++G+ L  +G+T VL T   +  +     GQ+   +T  Y     A 
Sbjct: 12  RAVTLERG-VSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    + +     I R+I RS+R + +     E Q+    +V+Q D    
Sbjct: 71  GD----RMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL           M+SG   +  +         G  VL+    ED   +
Sbjct: 125 TRTASITGAWVALRDCIEWMKARDMVSGEVLKDHIAAISCGIYEGTPVLDLDYAEDSTAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G    ++ ++  A     SE+     +         +++   
Sbjct: 185 TDANFVLTG-AGGIVEIQGTAEGAPFSEEEFGKLMGLAKLGIGKLVDLQK 233


>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 242

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 24/239 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I    G      GS L   G+T+ +   +     ++        +   
Sbjct: 6   RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTAS----AEQGVPRFKKDSGEG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E        G    R     RL  R++   +  T     T+ I  +
Sbjct: 62  WLTAEYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  P+A +++G++    D  +  
Sbjct: 122 VLQADGGTRTASITGAYIALADAIAYLTAQGVVPGNPLLPPIAAVSVGII----DGHVCL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           D+  +ED    +D  V  T  G    +Q   +    S + +   L  A++G   ++   
Sbjct: 178 DLPYEEDSRADVDLNVIMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKELIEAQ 236



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 26/226 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++  G       G+VL  YG T V+ T   ++ +   K       LT  Y     A 
Sbjct: 16  RPIRITRG-FTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTAEYAMLPAAT 74

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
             ++P   +R   +       ISR++ RS+R          N   +  +V+Q D      
Sbjct: 75  HERMPRESMR--GKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQADGG--TR 130

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
             S+  A  AL  +           G P   P+    V  I+G   L+ P  ++ +  +D
Sbjct: 131 TASITGAYIALADAIAYLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEEDSRADVD 190

Query: 176 LFVSGTQD-AVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L V  TQ+   + ++  A   +   D +   + +    CK +IEA 
Sbjct: 191 LNVIMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKELIEAQ 236


>gi|189425094|ref|YP_001952271.1| ribonuclease PH [Geobacter lovleyi SZ]
 gi|226736912|sp|B3E3D2|RNPH_GEOLS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189421353|gb|ACD95751.1| ribonuclease PH [Geobacter lovleyi SZ]
          Length = 238

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 24/239 (10%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR    +R I+     ++   G+ L   GDT+ I   ++    +E     L G       
Sbjct: 5   GRGLSDLRPITMTRHFIKHPEGAVLVEFGDTRVICTASV----EESVPPFLRGKGTGWVT 60

Query: 376 MHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y+ LP AT   S      G  S R +   RL  R++  V   T     T+ +  ++ +
Sbjct: 61  AEYSMLPRATHTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQ 120

Query: 432 SDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +AL+D            G P+ + VA +++G+V    D   + D+ 
Sbjct: 121 ADGGTRTASITGAYVALVDAVSALLVQGKITGNPLKEAVAAVSVGIV----DGQAVLDLD 176

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             ED    +D     T SG    +Q   +    +   M      A  G   +     + 
Sbjct: 177 YQEDSSAEVDMNFVMTSSGRFVEVQGTAEAEPFTLEQMDAMRSLAMTGINQLFTYQQEA 235



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T    +  +GAVL  +G+T V+ T   + S+     G+    +T  Y     A 
Sbjct: 12  RPITM-TRHFIKHPEGAVLVEFGDTRVICTASVEESVPPFLRGKGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + +   + I R+I RS+R +   +K  +    +  +V+Q D       
Sbjct: 71  -HTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL+           ++G P +  V    V  ++GQ VL+    ED      +
Sbjct: 128 ASITGAYVALVDAVSALLVQGKITGNPLKEAVAAVSVGIVDGQAVLDLDYQEDSSAEVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +  ++ +   V +    EA   + + +             +     +   
Sbjct: 188 NFVMTSSGRFVEVQGTAEAEPFTLEQMDAMRSLAMTGINQLFTYQQEALA 237


>gi|262377117|ref|ZP_06070342.1| ribonuclease PH [Acinetobacter lwoffii SH145]
 gi|262307855|gb|EEY88993.1| ribonuclease PH [Acinetobacter lwoffii SH145]
          Length = 238

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASV----DSSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   VA +++G+ KD     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLERKKIKHDPLKGLVAAVSVGIFKDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIQELVKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  REVKI-TRNYTRYAEGSVLVEFGHTKVLCTASVDSSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A+ AL+           +   P +G V    V     + +L+   +ED   Q  L
Sbjct: 128 AAITGAAVALVDAMNVLLERKKIKHDPLKGLVAAVSVGIFKDEVLLDLCYEEDSNCQTDL 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + + +    E    +       +       + +++   + 
Sbjct: 188 NVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIQELVKKQQEA 235


>gi|61215919|sp|Q6FFX5|RNPH_ACIAD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 238

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD+       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  + R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALIDAMNVLLEKKKIKQDPLKGLVAAISVGIYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QQA 235



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  RDVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + T     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A+ AL+           +   P +G V    V     + +L+   +ED   Q  L
Sbjct: 128 AAITGAAVALIDAMNVLLEKKKIKQDPLKGLVAAISVGIYQDEVLLDLCYEEDSNCQTDL 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + +  ++  A +   +       +       + +I+   + 
Sbjct: 188 NVVMTQAGEFI-EIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQA 235


>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
           fervidus DSM 2088]
 gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
           fervidus DSM 2088]
          Length = 236

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 13/224 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + VR DGR    +R +  + G+L+R  GSS    G  + +  V  G R+    +  +   
Sbjct: 9   EFVRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAV-YGPRDP--QITKIKRP 65

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R      YN  P +  E  R G P RR I   ++   A+ P +        ++ I  E+
Sbjct: 66  DRAIIRCRYNMAPFSVEERKRPG-PDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEV 124

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            E+DG +  A +  +S+AL DAG+P+   V   + G V    +  ++ D++ +ED  G  
Sbjct: 125 LEADGGTRCAGITAASVALADAGIPLRDLVVACSAGKV----NGHVVLDLTEEEDKEGEA 180

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D  VA       IT +Q+D   G ++   +  A+  A  G + I
Sbjct: 181 DVPVAIMPRTKEITLLQVD---GELTPEELEKAIDLAIEGCMSI 221



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 17/218 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           RP+K++ G + +++DG+     G   +LA V   R  +       D   +   Y    ++
Sbjct: 22  RPVKIKAGVL-KRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAIIRCRYNMAPFS 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    I IS++   ++ P  +  K  ++   + I V++ D      
Sbjct: 81  VEE------RKRPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVLEADGG--TR 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAV 185
              + AAS AL  +G+P    VV      +NG  VL+   +ED +G  D+      +   
Sbjct: 133 CAGITAASVALADAGIPLRDLVVACSAGKVNGHVVLDLTEEEDKEGEADVPVAIMPRTKE 192

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           + +     +L+ + +  AI      C  + +   K  +
Sbjct: 193 ITLLQVDGELTPEELEKAIDLAIEGCMSINKLQKKSIE 230


>gi|182677771|ref|YP_001831917.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
 gi|226736889|sp|B2IH14|RNPH_BEII9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|182633654|gb|ACB94428.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 237

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++ +  + +   GS L   G T  +   +L    +++    L G  R
Sbjct: 1   MRPSKRAAQDLRPVTLERNVARYAEGSCLVKFGGTHVLCTASL----EDKPPPWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHTRTRRESMSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+ + VA ++ G+ +       +
Sbjct: 117 DVLQADGGTRTAAITGAWVALHDCCKWMHGRSIIKEFPLREHVAAVSCGIYQGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED +   D     T  G +  +Q   +    SE+ + + L  AK G   ++N  
Sbjct: 173 LDLDYEEDSVAQTDANFVMTGGGALVEVQASAEGAVFSEDELSVLLALAKGGIAQLVNIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KLA 235



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 88/233 (37%), Gaps = 33/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +AR ++G+ L  +G T VL T   +        GQ    +T  Y     A 
Sbjct: 12  RPVTLERN-VARYAEGSCLVKFGGTHVLCTASLEDKPPPWLRGQGRGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +P+     I R+I RS+R + +     E Q+    +V+Q D    
Sbjct: 71  ----HTRTRRESMSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITLDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL            +   P    V         G+ VL+   +ED   Q
Sbjct: 125 TRTAAITGAWVALHDCCKWMHGRSIIKEFPLREHVAAVSCGIYQGEAVLDLDYEEDSVAQ 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLA 222
              +  ++G   A++ V+  A     SED +   +         ++  I KLA
Sbjct: 185 TDANFVMTG-GGALVEVQASAEGAVFSEDELSVLLALAKGGIAQLVN-IQKLA 235


>gi|251793341|ref|YP_003008069.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
 gi|247534736|gb|ACS97982.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
          Length = 238

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +   R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPNQRANNQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGLGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           +  P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGACVALCDALNGLVANGTLSKNPLKGLVAAISVGIV----DGEAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDIIFQTQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 RAALAD 238



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGLGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            LS  P +G V    V  ++G+ V +    ED   +
Sbjct: 125 TRTASITGACVALCDALNGLVANGTLSKNPLKGLVAAISVGIVDGEAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
             +++ +      ++ V+   E    S + +L  +      C  + +  
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDIIFQTQ 232


>gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
 gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
          Length = 273

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 36  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 91

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 92  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 151

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 152 DVIQADGGTRTASITGACVALADALNKLVASGKLKTNPMKGMVAAVSVGIVNGE----AL 207

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 208 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQ 267

Query: 536 SKV 538
              
Sbjct: 268 KAA 270



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     A 
Sbjct: 47  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWITAEYGMLPRAT 105

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 106 -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 162

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL         SG     P +G V    V  +NG+ + +    ++     D+
Sbjct: 163 ASITGACVALADALNKLVASGKLKTNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 222

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 223 NVVMTEDGRIIEVQGTAE 240


>gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 257

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I           GS L   G+T+ IV  ++    +++    L GT +
Sbjct: 1   MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASV----EDKVPPFLKGTGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P A+   S      G+PS R     RL  R++   +        T+ I  
Sbjct: 57  GWITAEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG + +A++ G+ +A+ DA +           P+   VA I++G V++     I+
Sbjct: 117 DVIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISIGKVRNE----IV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T  G    +    +    S+      L+  K G   ++   
Sbjct: 173 LDLNYAEDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQ 232

Query: 536 SKVLSESR 543
            + +    
Sbjct: 233 KEFIEGIP 240



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 23/217 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T V+ T   +  +     G     +T  Y     A        + R   
Sbjct: 24  AEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWITAEYSMIPRASETRSLREVVR-GS 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           P+     I R+I RS+R         E    +  +V+Q D      V S+  A  A+  +
Sbjct: 83  PSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQADGG--TRVASITGAFIAVADA 140

Query: 142 GL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
            +           P +  V    +  +  + VL+    ED   Q  ++L ++G  + V +
Sbjct: 141 CIKLTKQNLVKANPLKDYVAAISIGKVRNEIVLDLNYAEDSNAQVDMNLVMTGKGEFVEI 200

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
               E N  S++     + +G +  + +I+   +  +
Sbjct: 201 GATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIE 237


>gi|223041894|ref|ZP_03612080.1| ribonuclease PH [Actinobacillus minor 202]
 gi|240948855|ref|ZP_04753211.1| ribonuclease PH [Actinobacillus minor NM305]
 gi|223017310|gb|EEF15735.1| ribonuclease PH [Actinobacillus minor 202]
 gi|240296670|gb|EER47281.1| ribonuclease PH [Actinobacillus minor NM305]
          Length = 238

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+   VR +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRELNQVRPVKITRHYTKYAEGSVLIEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G    R +   RL  R++  ++   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAIVDLKALGERTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V +      +
Sbjct: 117 DVIQADGGTRTASITGACVALHDAINKLMADGVLKTNPLKGLVAAISVGIVNNN----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D G +  +Q   +    +   ++  L  A +G   ++   
Sbjct: 173 CDLEYVEDSNAETDMNVVMVDDGRLVEVQGTAEGEPFTHMELLQLLDLAHQGIEQLIEAQ 232

Query: 536 SKVLSE 541
            K L+E
Sbjct: 233 RKALAE 238



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +GET VL     + ++     GQ    +T  Y     A 
Sbjct: 12  RPVKI-TRHYTKYAEGSVLIEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +      +   +     + I R+I RS+R +       E    +  +V+Q D      
Sbjct: 71  HSRTQREAAK--GKQGGRTMEIQRLIARSLRAIVDLKALGERTITIDCDVIQADGG--TR 126

Query: 128 VVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL   ++ L         P +G V    V  +N   V +    ED   +  
Sbjct: 127 TASITGACVALHDAINKLMADGVLKTNPLKGLVAAISVGIVNNNAVCDLEYVEDSNAETD 186

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ +      ++ V+   E    +   +L  +   H   + +IEA  K    
Sbjct: 187 MNVVMV-DDGRLVEVQGTAEGEPFTHMELLQLLDLAHQGIEQLIEAQRKALAE 238


>gi|312903655|ref|ZP_07762831.1| ribonuclease PH [Enterococcus faecalis TX0635]
 gi|310633008|gb|EFQ16291.1| ribonuclease PH [Enterococcus faecalis TX0635]
          Length = 451

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 127/320 (39%), Gaps = 35/320 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWIAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAA 606
           +++ G     ++ L     A
Sbjct: 292 VEETGRTFEENARLKAETIA 311



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWIAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|307256075|ref|ZP_07537863.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865497|gb|EFM97392.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 238

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R    VR +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRKLNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIV----DGNAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A +G   +L+  
Sbjct: 173 CDLEYVEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPVKI-TRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               ++  A  AL            L   P +G V    V  ++G  V +    ++    
Sbjct: 125 TRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIVDGNAVCDLEYVEDSNAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V   +D  L VE++     E      +L  +   H     +++A  K   +
Sbjct: 185 TDMNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALAL 238


>gi|148653988|ref|YP_001281081.1| ribonuclease PH [Psychrobacter sp. PRwf-1]
 gi|172048586|sp|A5WHJ0|RNPH_PSYWF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148573072|gb|ABQ95131.1| RNAse PH [Psychrobacter sp. PRwf-1]
          Length = 238

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+ + +R ++ +    +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASV----EAGVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R     RL  R++  ++  T     T+ +  
Sbjct: 57  GWVTAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA +++G VK+G+   +L
Sbjct: 117 DVLQADGGTRTASITGAAIALIDALEVLQQKKKLKADPLIGLVAAVSVG-VKNGE---VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED     D  V  T  G    +Q   +    +       L  A++G   ++   
Sbjct: 173 LDLNYEEDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLVKLQ 232

Query: 536 SKV 538
              
Sbjct: 233 QTA 235



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +  E     + ++G+VL  +G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RTVTFERN-YTKHAEGSVLVCFGDTKVLCTASVEAGVPRWLKGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +   +K  +N   +  +V+Q D       
Sbjct: 71  N-TRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL 176
            S+  A+ AL+           L   P  G V    V   NG+ +L+   +ED     DL
Sbjct: 128 ASITGAAIALIDALEVLQQKKKLKADPLIGLVAAVSVGVKNGEVLLDLNYEEDSSCDTDL 187

Query: 177 FVSGT-QDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
            V  T +   + ++  A +   +       +         +++   
Sbjct: 188 NVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLVKLQQ 233


>gi|302037201|ref|YP_003797523.1| ribonuclease PH [Candidatus Nitrospira defluvii]
 gi|300605265|emb|CBK41598.1| Ribonuclease PH [Candidatus Nitrospira defluvii]
          Length = 247

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +       +   GS L   GDT+ I   ++    +E+    L G    
Sbjct: 9   RIDGRRRDQIRPVKVTRNFTKHAEGSVLIEMGDTKVICTASI----EEKVPPFLKGKGAG 64

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT + S      G    R +   RL  RA+  V+        T+ I  +
Sbjct: 65  WVTAEYAMLPRATHDRSPRESVKGKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL D              P++  +A I++G V       ++ 
Sbjct: 125 VIQADGGTRTASITGSFIALADAVGVLRKKDLIKVNPLTDYLAAISIGKV----GGQVMV 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED    +D  +  T +G    +Q   +    ++  M   L         +++   
Sbjct: 181 DLAYEEDSHAEVDLNLVMTGAGQYVEVQGTAEKTPFNKKDMDEFLDLGWGAIRELVDLQK 240

Query: 537 K 537
            
Sbjct: 241 S 241



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 90/230 (39%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T V+ T   +  +     G+    +T  Y     A 
Sbjct: 19  RPVKV-TRNFTKHAEGSVLIEMGDTKVICTASIEEKVPPFLKGKGAGWVTAEYAMLPRAT 77

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             + P   ++   +     + I R++ R++R +       E    +  +V+Q D      
Sbjct: 78  HDRSPRESVK--GKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCDVIQADGG--TR 133

Query: 128 VVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  +  AL  +        L    P    +    +  + GQ +++   +ED   +  
Sbjct: 134 TASITGSFIALADAVGVLRKKDLIKVNPLTDYLAAISIGKVGGQVMVDLAYEEDSHAEVD 193

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           L+L ++G    V  V+  A +    +  + + +  G    + +++    L
Sbjct: 194 LNLVMTGAGQYV-EVQGTAEKTPFNKKDMDEFLDLGWGAIRELVDLQKSL 242


>gi|315153645|gb|EFT97661.1| ribonuclease PH [Enterococcus faecalis TX0031]
          Length = 451

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLITGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLITGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|312899597|ref|ZP_07758923.1| ribonuclease PH [Enterococcus faecalis TX0470]
 gi|311293276|gb|EFQ71832.1| ribonuclease PH [Enterococcus faecalis TX0470]
          Length = 451

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAINHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAINHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|299133261|ref|ZP_07026456.1| ribonuclease PH [Afipia sp. 1NLS2]
 gi|298593398|gb|EFI53598.1| ribonuclease PH [Afipia sp. 1NLS2]
          Length = 238

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 27/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G+++   GS +   GDT  +V  TL    +E+    L G  R
Sbjct: 1   MRPSGRAPDELRPVSLERGVVKYAEGSCMVKFGDTHVLVTATL----EERLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +  R     G  S R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHDRVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D                +   VA I+ G+     +   
Sbjct: 117 DVIQADGGTRTASITGAWVALADCLQWMKARNMLKNDNVLRDNVAAISCGI----HNGTP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIM--VMALQQAKRGRLHIL 532
           + D+   ED     D     T  G +  +Q   +    S++    +MAL Q+  GRL  L
Sbjct: 173 VLDLDYAEDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLKLMALAQSGVGRLVEL 232

Query: 533 NEMSKV 538
            +++  
Sbjct: 233 QKIAMA 238



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 33/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE G + + ++G+ +  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RPVSLERGVV-KYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +   + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  HDR----VRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL              +       V        NG  VL+    ED   
Sbjct: 125 TRTASITGAWVALADCLQWMKARNMLKNDNVLRDNVAAISCGIHNGTPVLDLDYAEDSEA 184

Query: 171 QGSLDLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +   +  ++G    ++ V+  A     S+D  L  +    +    ++E   
Sbjct: 185 ETDANFVMTG-DGRLVEVQGTAERTPFSQDEFLKLMALAQSGVGRLVELQK 234


>gi|229546199|ref|ZP_04434924.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|229550384|ref|ZP_04439109.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255973155|ref|ZP_05423741.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255976198|ref|ZP_05426784.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256762130|ref|ZP_05502710.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256852772|ref|ZP_05558142.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256958619|ref|ZP_05562790.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256965477|ref|ZP_05569648.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|257078027|ref|ZP_05572388.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|257082915|ref|ZP_05577276.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|257086477|ref|ZP_05580838.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257415736|ref|ZP_05592730.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis AR01/DG]
 gi|257422961|ref|ZP_05599951.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294780993|ref|ZP_06746345.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300860046|ref|ZP_07106134.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|307273813|ref|ZP_07555035.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|307274576|ref|ZP_07555756.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|307278842|ref|ZP_07559905.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|307288573|ref|ZP_07568557.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|307291105|ref|ZP_07570990.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|312951374|ref|ZP_07770272.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|229304506|gb|EEN70502.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229308723|gb|EEN74710.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|255964173|gb|EET96649.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255969070|gb|EET99692.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256683381|gb|EEU23076.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256711231|gb|EEU26269.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256949115|gb|EEU65747.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256955973|gb|EEU72605.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|256986057|gb|EEU73359.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|256990945|gb|EEU78247.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|256994507|gb|EEU81809.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257157564|gb|EEU87524.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ARO1/DG]
 gi|257164785|gb|EEU94745.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294451939|gb|EFG20389.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300850864|gb|EFK78613.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|306497759|gb|EFM67291.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|306500480|gb|EFM69813.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|306504513|gb|EFM73720.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|306508728|gb|EFM77818.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|306509498|gb|EFM78546.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|310630634|gb|EFQ13917.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|315028079|gb|EFT40011.1| ribonuclease PH [Enterococcus faecalis TX2137]
 gi|315030712|gb|EFT42644.1| ribonuclease PH [Enterococcus faecalis TX4000]
 gi|315031600|gb|EFT43532.1| ribonuclease PH [Enterococcus faecalis TX0017]
 gi|315034958|gb|EFT46890.1| ribonuclease PH [Enterococcus faecalis TX0027]
 gi|315148459|gb|EFT92475.1| ribonuclease PH [Enterococcus faecalis TX4244]
 gi|315156537|gb|EFU00554.1| ribonuclease PH [Enterococcus faecalis TX0043]
 gi|315158363|gb|EFU02380.1| ribonuclease PH [Enterococcus faecalis TX0312]
 gi|315165533|gb|EFU09550.1| ribonuclease PH [Enterococcus faecalis TX1302]
 gi|315168390|gb|EFU12407.1| ribonuclease PH [Enterococcus faecalis TX1341]
 gi|323480361|gb|ADX79800.1| ribonuclease PH [Enterococcus faecalis 62]
 gi|329576387|gb|EGG57900.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1467]
          Length = 451

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|293611262|ref|ZP_06693560.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|292826513|gb|EFF84880.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|325124022|gb|ADY83545.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 238

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +  G  + R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTASITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  REVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             +      R   + T     I R+I RS+R +    K  +N   +  +V+Q D      
Sbjct: 71  HSRCDREAAR--GKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A+ AL+           +   P +G V    V     + +L+   +ED   Q  
Sbjct: 127 TASITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           L++ ++   + + +    E    +       +         +I+   + 
Sbjct: 187 LNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEA 235


>gi|262370973|ref|ZP_06064296.1| ribonuclease PH [Acinetobacter johnsonii SH046]
 gi|262314049|gb|EEY95093.1| ribonuclease PH [Acinetobacter johnsonii SH046]
          Length = 238

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +RD++      +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRTLDQLRDVTITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALIDAMNTLLEKKKIKQDPLKGLVAAISVGIFQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRVQCNAMLEMAEKGIQELVKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QQA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + + T    R ++G+VL  +G T VL T   D S+     G+    +T  Y     + 
Sbjct: 12  RDVTI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A+ AL+           +   P +G V    V     + +L+   +ED   Q  L
Sbjct: 128 AAITGAAVALIDAMNTLLEKKKIKQDPLKGLVAAISVGIFQDEVLLDLCYEEDSNCQTDL 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + + +    E    +       +       + +++   + 
Sbjct: 188 NVVMTQAGEFIEIQGTAEDKPFTRVQCNAMLEMAEKGIQELVKKQQQA 235


>gi|93006978|ref|YP_581415.1| ribonuclease PH [Psychrobacter cryohalolentis K5]
 gi|122414849|sp|Q1Q8S2|RNPH_PSYCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|92394656|gb|ABE75931.1| RNAse PH [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+   +R IS +    +   GS L   GDT+ +   ++ +         L G  +
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESG----VPRWLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R     RL  R++  ++  +     T+ +  
Sbjct: 57  GWITAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A+V G+++AL+D              P+   VA +++G +KDG  +   
Sbjct: 117 DVLQADGGTRTASVTGAAIALIDALESIQKTKKLKADPLIGLVAAVSVG-MKDGKAY--- 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED     D  V  T  G    +Q   +    +       L  A++G   ++   
Sbjct: 173 LDLNYEEDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLILAEKGIAELIAMQ 232

Query: 536 SKV 538
              
Sbjct: 233 KTA 235



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           R +  E     + ++G+VL ++G+T VL T  V     +   G+    +T  Y     A 
Sbjct: 12  RSISFER-HYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  N-TRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL 176
            S+  A+ AL   L  +         P  G V    V   +G+  L+   +ED     DL
Sbjct: 128 ASVTGAAIALIDALESIQKTKKLKADPLIGLVAAVSVGMKDGKAYLDLNYEEDASCDTDL 187

Query: 177 FVSGT-QDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
            V  T +   + ++  A +   +     D +I        +I    
Sbjct: 188 NVVMTQKGEFIELQGTAEEKPFTRAQADDMLILAEKGIAELIAMQK 233


>gi|254784432|ref|YP_003071860.1| ribonuclease PH [Teredinibacter turnerae T7901]
 gi|259494129|sp|C5BLF9|RNPH_TERTT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237687110|gb|ACR14374.1| tRNA nucleotidyltransferase [Teredinibacter turnerae T7901]
          Length = 239

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR +  +RDIS      +   GS L   GDT+ I   T+    +E     L G  + 
Sbjct: 3   RPSGRAANQLRDISITRHYTRHAEGSVLVCFGDTKVICTATV----EEGVPRFLKGEGQG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G    R +   RL  R++   +  T    +++ I  +
Sbjct: 59  WVTAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+D              P+   VA +++G+ +       + 
Sbjct: 119 VIQADGGTRTASITGACVALVDALRFMQRSKMIQTDPLRHLVASVSVGMYQGE----AVL 174

Query: 478 DISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  +  T   G+  +Q   +    SE+  +     AK G   +     
Sbjct: 175 DLDYPEDSNADTDMNMVMTEQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEGISELCEFQR 234

Query: 537 K 537
           +
Sbjct: 235 Q 235



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 30/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-----DGQDFFPLTVNYQERTY 68
           R + + T    R ++G+VL  +G+T V+ T   +  +      +GQ +  +T  Y     
Sbjct: 13  RDISI-TRHYTRHAEGSVLVCFGDTKVICTATVEEGVPRFLKGEGQGW--VTAEYGMLPR 69

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSP 126
           + G   G    R  +     + I R+I RS+R         E    +  +V+Q D     
Sbjct: 70  STGSRMGREAAR-GKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITIDCDVIQADGG--T 126

Query: 127 HVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQG 172
              S+  A  AL           M+   P    V    V    G+ VL+   P       
Sbjct: 127 RTASITGACVALVDALRFMQRSKMIQTDPLRHLVASVSVGMYQGEAVLDLDYPEDSNADT 186

Query: 173 SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK 220
            +++ ++  Q  ++ ++  A Q   SED  +            + E   +
Sbjct: 187 DMNMVMT-EQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEGISELCEFQRQ 235


>gi|163742618|ref|ZP_02150004.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
 gi|161384203|gb|EDQ08586.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
          Length = 237

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+ + +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRNLDQMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM  G     P+  PVA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKTGEVKIDPLVDPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    S   M   +  A +G   +    
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAACA 237



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RAVSIETG-FTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLS----------GL-PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+           + P   PV         GQ VL+   P   E  
Sbjct: 125 TRCASITGGWVALRLAVNKLMKTGEVKIDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   + + +  E +  S + +   +         + E   
Sbjct: 185 VDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQK 233


>gi|307133086|ref|YP_003885102.1| ribonuclease PH [Dickeya dadantii 3937]
 gi|306530615|gb|ADN00546.1| ribonuclease PH [Dickeya dadantii 3937]
          Length = 238

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    ++     L G  +
Sbjct: 1   MRPTGRSAQQIRPLTLTRHYTKHAEGSVLVEFGDTKVLCNATV----EDGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNGMVASGKLKTSPLKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S + ++  L  A++G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 87/232 (37%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDL------ 122
                     + +     + I R+I RS+R     +K  +    +  +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQADGGTRTAS 129

Query: 123 -----ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
                 +    ++ + AS  L  S  P +G V    V  +NG+ V +    ++     D+
Sbjct: 130 ITGACVALADALNGMVASGKLKTS--PLKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAISKLAKM 224
            V  T+D  + +E++     E    D +L  +       + ++ A       
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238


>gi|307943385|ref|ZP_07658729.1| ribonuclease PH [Roseibium sp. TrichSKD4]
 gi|307773015|gb|EFO32232.1| ribonuclease PH [Roseibium sp. TrichSKD4]
          Length = 237

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 26/243 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++ + G+ +   GS L   GDT  +   +L    +E+    L G QR
Sbjct: 1   MRPSKRANDELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASL----EERVPPWLRGQQR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+  R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL D               +   +A I+ G+     D   +
Sbjct: 117 DVIQADGGTRTAAITGSWVALRDCIEWMKARDMVKKDVLKDHIAAISCGI----HDGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMAL--QQAKRGRLHILN 533
            D+   ED     D     T S GI  +Q   +    SE      +   +A  GRL  L 
Sbjct: 173 LDLDYAEDSTAETDANFVMTGSGGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQ 232

Query: 534 EMS 536
           +MS
Sbjct: 233 KMS 235



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G +++ ++G+ L  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RAVTLERG-VSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GD----RMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  +  AL           M+     +  +        +G  VL+    ED   +
Sbjct: 125 TRTAAITGSWVALRDCIEWMKARDMVKKDVLKDHIAAISCGIHDGTPVLDLDYAEDSTAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   ++ ++  A     SE+     +         +++   
Sbjct: 185 TDANFVMTGS-GGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQK 233


>gi|256618706|ref|ZP_05475552.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|257089534|ref|ZP_05583895.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|256598233|gb|EEU17409.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|256998346|gb|EEU84866.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|315577483|gb|EFU89674.1| ribonuclease PH [Enterococcus faecalis TX0630]
          Length = 451

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 127/320 (39%), Gaps = 35/320 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAA 606
           +++ G     ++ L     A
Sbjct: 292 VEETGRTFEENARLKAETIA 311



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|29375698|ref|NP_814852.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256962282|ref|ZP_05566453.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257418951|ref|ZP_05595945.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|293383311|ref|ZP_06629226.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|293387532|ref|ZP_06632081.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|312905818|ref|ZP_07764838.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|312909127|ref|ZP_07767986.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|29343159|gb|AAO80922.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256952778|gb|EEU69410.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257160779|gb|EEU90739.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|291079334|gb|EFE16698.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|291083042|gb|EFE20005.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|310628157|gb|EFQ11440.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|311290551|gb|EFQ69107.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|315174641|gb|EFU18658.1| ribonuclease PH [Enterococcus faecalis TX1346]
 gi|315573714|gb|EFU85905.1| ribonuclease PH [Enterococcus faecalis TX0309B]
 gi|315582671|gb|EFU94862.1| ribonuclease PH [Enterococcus faecalis TX0309A]
 gi|327534753|gb|AEA93587.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis OG1RF]
          Length = 451

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
 gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
          Length = 239

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 22/240 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R +      L+   GS L   GDT+ I   ++    +E+    L G  +
Sbjct: 1   MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASV----EEKVPPFLRGENK 56

Query: 372 NDFMMHYNFLPCATGEV--SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT        G  S R     RL  RA+  V+   A    T+ +  ++
Sbjct: 57  GWVTAEYAMLPRATQIRTMRERGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCDV 116

Query: 430 TESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A + GS +AL             + VP++  +A  ++G+V D     ++ D
Sbjct: 117 VQADGGTRTAAISGSFVALYLALSKLVAAGTLSEVPVTDYLAATSIGIVDDK----LMLD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           ++  ED    +D  V  T SG I  +Q   +    S   M   +  A +G   I++   +
Sbjct: 173 LAFSEDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQKR 232



 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 88/229 (38%), Gaps = 28/229 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RPLK+ T    +  +G+VL   G+T V+ T   +  +     G++   +T  Y     A 
Sbjct: 12  RPLKI-TPEFLKYPEGSVLIEVGDTRVICTASVEEKVPPFLRGENKGWVTAEYAMLPRA- 69

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                  +R   + +     I R+I R++R +       E    V  +V+Q D       
Sbjct: 70  --TQIRTMRERGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCDVVQADGG--TRT 125

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  +  AL            LS +P    +    +  ++ + +L+    ED      +
Sbjct: 126 AAISGSFVALYLALSKLVAAGTLSEVPVTDYLAATSIGIVDDKLMLDLAFSEDSKADVDM 185

Query: 175 DLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+ + ++ V+  A     S   + + +         +++   +L
Sbjct: 186 NVVMTGSGN-IVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQKRL 233


>gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa
          Length = 239

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TGE ++     G    R +   RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+++AL+D            G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQXVAAVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  TD  G   +Q   +        +   L+ A++G   +     
Sbjct: 175 DLDYLEDSAAETDLNVVXTDAGGFIEVQGTAEGAPFRPAELNAXLELAQQGXQELFELQR 234

Query: 537 KVLSE 541
             L+E
Sbjct: 235 AALAE 239



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RPIRI-TRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGXLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A+ AL            L G P +  V    V    G  VL+    ++     DL
Sbjct: 129 ASITGATVALIDALAVLKKRGALKGNPLKQXVAAVSVGIYQGVPVLDLDYLEDSAAETDL 188

Query: 177 FVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
            V  T     + V+  A         +   +       + + E        
Sbjct: 189 NVVXTDAGGFIEVQGTAEGAPFRPAELNAXLELAQQGXQELFELQRAALAE 239


>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
 gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
 gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
          Length = 246

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 12/244 (4%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   VR DGR  + +R++   VG++    GS++   G T A V    G RE   +   L
Sbjct: 8   LLQNGVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTA-VAAVYGPREM--HPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +         + + 
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVF 124

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            EI ++DGS+ +A++  +SLAL DAG+ +      + +G+     D  ++ D++G ED  
Sbjct: 125 VEILQADGSTRVASLTAASLALADAGIYMRD----LVVGVSVGLVDGTVVLDLNGLEDQY 180

Query: 487 GHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           G  D  +    +    T +Q+D   G  + ++ + AL  A RG  ++       L    +
Sbjct: 181 GEGDLPLGYMPNLKRFTLLQLD---GAWTRDMFLQALNLAVRGAEYVYQIARDALKNKYM 237

Query: 545 QLGE 548
            + E
Sbjct: 238 SIAE 241



 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 10/199 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +K+  G ++  +DG+ + +YG T  +A V   R +       P     + R Y +   
Sbjct: 24  REVKIAVGVVS-NADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVR-YHMAPF 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                R+   P+  EI IS+++  ++ P  +  +  ++   V + ++Q D   S  V S+
Sbjct: 82  STKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADG--STRVASL 139

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
            AAS AL  +G+     VVG  V  ++G  VL+    ED   +G L L          ++
Sbjct: 140 TAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMPNLKRFTLL 199

Query: 189 ELEANQLSEDVVLDAIIFG 207
           +L+    + D+ L A+   
Sbjct: 200 QLDG-AWTRDMFLQALNLA 217


>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
          Length = 243

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 8/243 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R + AQ+G++ +  GS++F  G+T+ I  V  G  E +    
Sbjct: 2   EYISPEGLRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAV-YGPHEVQNKNQ 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    +      Y+    +TG+  R     RR      + R+ +   +         + 
Sbjct: 61  QL--PDQALVRCEYSMANFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  ++LAL DAG+P+   V   A G +        L D++  ED
Sbjct: 119 IFVQVLQADGGTRSACINAATLALADAGIPMCDLVTSCAAGYLNSTP----LLDMNYMED 174

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  V      +  + +      +  +I    +Q A  G   I+  +  VL E+  
Sbjct: 175 SAGGPDVAVGLMTK-MDKLSLLQMDSKLPMDIFETVMQLAIEGCKAIVRYIQDVLLENTK 233

Query: 545 QLG 547
           QL 
Sbjct: 234 QLE 236



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 12/212 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R L  + G + + +DG+ +   G T V+A V     +++     P    +   Y    ++
Sbjct: 20  RQLHAQLGVVDK-ADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQALVRCEYSMANFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G  P     R S+       IS +I +++           TQ+ I V     +      
Sbjct: 79  TGDRP-----RRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVLQADGGTRSA 133

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG--TQDAVLM 187
            + AA+ AL  +G+P    V      Y+N   +L+    ED         G  T+   L 
Sbjct: 134 CINAATLALADAGIPMCDLVTSCAAGYLNSTPLLDMNYMEDSAGGPDVAVGLMTKMDKLS 193

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +    ++L  D+    +      CK ++  I 
Sbjct: 194 LLQMDSKLPMDIFETVMQLAIEGCKAIVRYIQ 225


>gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b]
 gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b]
          Length = 237

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+ +   GS L   G+T  +   +L    +++    L G  R
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASL----EDKPPPWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G PS R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYAMLPRATHTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ LAL D              P+   VA ++ G+   G     +
Sbjct: 117 DVLQADGGTRTAAISGAWLALHDCFQWMRSRSIIKENPLRDHVAAVSCGVCDAGP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   G+  +Q   +    +E  +   L  A+ G   ++   
Sbjct: 173 IDLDYGEDSTAKTDANFVITGGGGLVEVQSTAEAAVFTEADLSAMLSLARAGIGKLIEMQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KAAIA 237



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 79/233 (33%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  E G +AR ++G+ L  +G T VL     +        GQ    +T  Y     A 
Sbjct: 12  RPVSFERG-VARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    +P+     I R+I RS+R +       E QV+   +V+Q D    
Sbjct: 71  ----HTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL            +   P    V        +   V++    ED   +
Sbjct: 125 TRTAAISGAWLALHDCFQWMRSRSIIKENPLRDHVAAVSCGVCDAGPVIDLDYGEDSTAK 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G    V +    EA   +E  +   +         +IE       
Sbjct: 185 TDANFVITGGGGLVEVQSTAEAAVFTEADLSAMLSLARAGIGKLIEMQKAAIA 237


>gi|312128053|ref|YP_003992927.1| ribonuclease ph [Caldicellulosiruptor hydrothermalis 108]
 gi|311778072|gb|ADQ07558.1| ribonuclease PH [Caldicellulosiruptor hydrothermalis 108]
          Length = 258

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 25/257 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S +     L+  KRG   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQ 232

Query: 536 SKVLSESRLQLGEFTPR 552
            +VL E   +L    P+
Sbjct: 233 KEVLGE-DCELVGSVPK 248



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       +I  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGICDGVEMLDLCFEEDSKAAVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++   + + +    E    S D     +  G    + +IE   ++
Sbjct: 188 NLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQKEV 235


>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
 gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
          Length = 256

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R +    G      GS L   G+T+ +   ++    +E        +   
Sbjct: 18  RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASV----EEGVPRFKKDSGEG 73

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T E        G    R     RL  RA+   +        T+ I  +
Sbjct: 74  WLTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCD 133

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D +   
Sbjct: 134 VLQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGII----DGVPCL 189

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  VA T  G    +Q   +    +   +   L  A+ G   ++    
Sbjct: 190 DLPYEEDSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQR 249

Query: 537 KVLSE 541
             L++
Sbjct: 250 AALAQ 254



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++  G  +  + G+VL  +G T V+ T   +  +   K       LT  Y     + 
Sbjct: 28  RPVRITRGFTSNPA-GSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTAEYAMLPAST 86

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             ++P   ++   +       ISR++ R++R      +  +N   +  +V+Q D      
Sbjct: 87  HERMPRESMK--GKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQADGG--TR 142

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
             ++  A  AL  +           G P   PV    V  I+G   L+ P  ++ +  +D
Sbjct: 143 TAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEEDSRADVD 202

Query: 176 LFVSGTQDA-VLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V+ T +   + ++      + + + +   +       + +IEA       
Sbjct: 203 MNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQ 254


>gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 240

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL+D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L+ AK+G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QKAALAD 240



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL+ +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ +    + V+  A       + +   +         + E        
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240


>gi|307249253|ref|ZP_07531250.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858777|gb|EFM90836.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 238

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+   VR +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA I++G+V    +   +
Sbjct: 117 DVIQADGGTRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIV----NGNAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A +G   +L+  
Sbjct: 173 CDLEYVEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPVKI-TRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               ++  A  AL            L   P +G V    V  +NG  V +    ++    
Sbjct: 125 TRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIVNGNAVCDLEYVEDSNAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V   +D  L VE++     E      +L  +   H     +++A  K   +
Sbjct: 185 TDMNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALAL 238


>gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
 gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
          Length = 262

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 104/267 (38%), Gaps = 27/267 (10%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             ++ D Q  V  +V + +  R  GR ++ +R I       +   GS L   GDT+ I  
Sbjct: 6   DGLYNDRQFSV--SVQVSQMKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICT 63

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARR 407
           V++    +      L G  +      Y  LP ATGE ++     G    R +   RL  R
Sbjct: 64  VSV----ENGVPRFLKGQGQGWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGR 119

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD------------AGVPI 455
           ++   L  +     TL +  ++ ++DG +  A++ G+ +AL D             G P+
Sbjct: 120 SLRAALDMSKLGDVTLYVDCDVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPL 179

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISE 514
            + +A  ++G+ +       + D+   ED     D  V  T   G   +Q   +      
Sbjct: 180 KQMIAAASVGMYQGEP----VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQP 235

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSE 541
             +   L  A++G   +       L++
Sbjct: 236 EELNAMLALAQKGMTELFEMQRAALAD 262



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 35  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 93

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 94  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 150

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +  A V    G+ VL+    ED   +  
Sbjct: 151 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLEDSAAETD 210

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L++ ++ +    + V+  A       + +   +         + E  
Sbjct: 211 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQ 256


>gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226736948|sp|B5YFY8|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 236

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 96/242 (39%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R I  +   ++   GS L   G+T+ I   ++    + +    L   ++
Sbjct: 1   MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASI----ENKVPPFLKDQKK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R     RL  R +  V+        T+ I  
Sbjct: 57  GWITAEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ E+DG +  A++ G  +AL           M    PI   +A I++G+V         
Sbjct: 117 DVIEADGGTRTASITGGYIALVEAVKKAMNAGMITENPIKDSIAAISVGIVLGEPR---- 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  T SG    +Q   +I   S+  ++  L  A++G   I+  +
Sbjct: 173 LDLCYAEDSQAEVDMNIVMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIRVI 232

Query: 536 SK 537
           + 
Sbjct: 233 NN 234



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+E   I + +DG+VL   G T V+ T   +  +      Q    +T  Y     + 
Sbjct: 12  RPIKIEKNFI-KNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWITAEYGMLPRS- 69

Query: 71  GKIPGGYLRR--ESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSP 126
              P   LR     R       I R+I R++R +    K  +    +  +V++ D  +  
Sbjct: 70  --TPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDCDVIEADGGTRT 127

Query: 127 H---------VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
                     V ++  A  A M++  P +  +    V  + G+  L+    ED   +  +
Sbjct: 128 ASITGGYIALVEAVKKAMNAGMITENPIKDSIAAISVGIVLGEPRLDLCYAEDSQAEVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+    + ++  A     S++ +L  +       + +I  I+ L
Sbjct: 188 NIVMTGS-GKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIRVINNL 235


>gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7]
          Length = 249

 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R         +   GS L   GDT+ I   ++    +++    L G   
Sbjct: 1   MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASI----EDKVPPFLKGKGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN +P +T          G    R +   R+  RA+  V+   +    T+ I  
Sbjct: 57  GWITCEYNMIPRSTKVRKVRDINRGKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   V  I++G+V +    + +
Sbjct: 117 DVIQADGGTRTASISGAFIALVDAVNKLHKQTPFNVYPVRDFVGAISVGIVGN----VKM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED   ++D  V  TDSG    +Q   +    S+  +   L  A++G  H++   
Sbjct: 173 LDLCYEEDSKANVDMNVVMTDSGEFIEIQGTGEEKPFSKQDLSELLSLAEQGINHVIQIE 232

Query: 536 SK 537
            +
Sbjct: 233 KE 234



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 25/221 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G+    +T  Y     +        + R 
Sbjct: 22  KYAEGSVLIEAGDTKVICTASIEDKVPPFLKGKGEGWITCEYNMIPRSTKVRKVRDINR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            +     + I R+I R++R +       E    +  +V+Q D        S+  A  AL+
Sbjct: 81  GKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWIDCDVIQADGG--TRTASISGAFIALV 138

Query: 140 LS------GLPFEGP-----VVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
            +        PF        V    V  +    +L+   +ED      +++ ++ + + +
Sbjct: 139 DAVNKLHKQTPFNVYPVRDFVGAISVGIVGNVKMLDLCYEEDSKANVDMNVVMTDSGEFI 198

Query: 186 LMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             ++    +   S+  + + +         VI+   +  KM
Sbjct: 199 -EIQGTGEEKPFSKQDLSELLSLAEQGINHVIQIEKESLKM 238


>gi|315924264|ref|ZP_07920488.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622425|gb|EFV02382.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 247

 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 91/249 (36%), Gaps = 23/249 (9%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             M ++  R DGR     R         +  HGS L   GDT+ I         +E    
Sbjct: 2   RFMTEQFKRQDGRFYNEGRPTQVMRHFTKHAHGSVLMAVGDTKVICTA----MCEETVPG 57

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            + G  R      Y+ LP AT    R    G    R +   RL  R++  V+        
Sbjct: 58  FMRGEGRGWVTAEYSMLPSATETRKRRDRNGKTDGRSVEIQRLIGRSLRAVMDMETLGER 117

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
           T+RI  ++ ++DG +    + G+ +AL D              PI   VA  ++G+ +  
Sbjct: 118 TIRIDCDVIQADGGTRTTAITGAFIALWDCVASLLDSGMIEKNPIRGFVAATSVGVWQGT 177

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRL 529
                + D+   ED    +D  +  TD G I  +Q   +    + +     +   + G  
Sbjct: 178 P----ILDLCYLEDSHAEVDMNLVMTDDGRIIEIQGTGEARPFTRDEFDRLMALGQDGIA 233

Query: 530 HILNEMSKV 538
           H++     V
Sbjct: 234 HLIAVQKDV 242



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 26/216 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + + G+VL   G+T V+ T + + ++     G+    +T  Y     A          R 
Sbjct: 30  KHAHGSVLMAVGDTKVICTAMCEETVPGFMRGEGRGWVTAEYSMLPSATETRKRRD--RN 87

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL- 138
            +     + I R+I RS+R +       E   ++  +V+Q D        ++  A  AL 
Sbjct: 88  GKTDGRSVEIQRLIGRSLRAVMDMETLGERTIRIDCDVIQADGG--TRTTAITGAFIALW 145

Query: 139 ----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                     M+   P  G V    V    G  +L+    ED   +  ++L ++     +
Sbjct: 146 DCVASLLDSGMIEKNPIRGFVAATSVGVWQGTPILDLCYLEDSHAEVDMNLVMT-DDGRI 204

Query: 186 LMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           + ++   EA   + D     +  G +    +I    
Sbjct: 205 IEIQGTGEARPFTRDEFDRLMALGQDGIAHLIAVQK 240


>gi|315170973|gb|EFU14990.1| ribonuclease PH [Enterococcus faecalis TX1342]
          Length = 451

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAINHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IT 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAINHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|315144635|gb|EFT88651.1| ribonuclease PH [Enterococcus faecalis TX2141]
 gi|315160934|gb|EFU04951.1| ribonuclease PH [Enterococcus faecalis TX0645]
          Length = 451

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IT 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|288933001|ref|YP_003437060.1| ribonuclease PH [Klebsiella variicola At-22]
 gi|288887730|gb|ADC56048.1| ribonuclease PH [Klebsiella variicola At-22]
          Length = 238

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLAAAGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYIEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLAAAGKLKTNPMKGMVAAVSVGIVNGEAICDLEYIEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
          Length = 253

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I      LQ   GS L   G+T+ I  V++     +     L G  +
Sbjct: 1   MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSV----QDGVPPFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  S R     R+  RA+   L  T     T  I  
Sbjct: 57  GWITAEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERTFWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+ DA +           PI   VA +++G V    +  IL
Sbjct: 117 DVIQADGGTRTASITGAFVAIADAVIKLYNEGILSSTPIKDFVASVSVGTV----NGQIL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG I+ +Q   +    S       L  A  G   ++   
Sbjct: 173 LDLNYEEDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQ 232

Query: 536 SKVLS 540
                
Sbjct: 233 RAFYE 237



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 25/219 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+ L  +G T V+ TV     +     G+    +T  Y     A           + R +
Sbjct: 26  GSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWITAEYSMLPRAT-ITRNVRESVQGRIS 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHVVSMVAASAALM---- 139
                I RMI R++R         E    +  +V+Q D        S+  A  A+     
Sbjct: 85  GRTHEIQRMIGRAMRTALDLTKIGERTFWIDCDVIQADGG--TRTASITGAFVAIADAVI 142

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
                  LS  P +  V    V  +NGQ +L+   +ED      +++  +G+   +  ++
Sbjct: 143 KLYNEGILSSTPIKDFVASVSVGTVNGQILLDLNYEEDSTASVDMNVVATGS-GRISEIQ 201

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
               + +   +     +         +IE      ++  
Sbjct: 202 ALGEENTFSREEFDRMLSLALAGISQLIELQRAFYEIVG 240


>gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ]
 gi|259494117|sp|C1DI48|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ]
          Length = 239

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR    +R I       +   GS L   GDT+ I  V+     +      L G  +
Sbjct: 2   KRPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVS----AEAGVPRFLKGQGK 57

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE        G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D            G P+ + VA +++G+ +       +
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEP----I 173

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  TD  G   +Q   +        +   L  A +G   +    
Sbjct: 174 LDLDYPEDSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQ 233

Query: 536 SKVLSE 541
             VL++
Sbjct: 234 RAVLAD 239



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 89/228 (39%), Gaps = 30/228 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    R ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RPIRI-TRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G+       R  R     + I R+I RS+R     SK  +N   V  +V+Q D       
Sbjct: 72  GERMAREASR-GRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL            L G P +  V    V    G+ +L+   P   + +  L
Sbjct: 129 ASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPEDSDAETDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAI 218
           ++ ++   DA   +E++     E    + +   +       + + E  
Sbjct: 189 NVVMT---DAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQ 233


>gi|315292912|gb|EFU52264.1| ribonuclease PH [Escherichia coli MS 153-1]
          Length = 214

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 24/222 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIM 517
            D+   ED     D  V  T+ G I  +Q   +    +   +
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|37528679|ref|NP_932024.1| ribonuclease PH [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|61215997|sp|Q7MAX2|RNPH_PHOLL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|36788118|emb|CAE17242.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 242

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +E VR I+      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V         
Sbjct: 117 DVIQADGGTRTASITGACVALVDALNKIVEAGKLKESPLKSMVAAVSVGIVDGEGR---- 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S + ++  L  AK G   I +  
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLALAKGGLEDIFDAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 RNALKQ 238



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     + 
Sbjct: 12  RPITI-TRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       +     + I R+I RS+R      K  +    +  +V+Q D       
Sbjct: 71  -HTRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL   L+ +         P +  V    V  ++G+   +    ED   +  +
Sbjct: 128 ASITGACVALVDALNKIVEAGKLKESPLKSMVAAVSVGIVDGEGRCDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++ +      ++ V+   E    S D +L  +       + + +A     K  A
Sbjct: 188 NVVM-MEDGRMIEVQGTAEGEPFSHDELLSLLALAKGGLEDIFDAQRNALKQNA 240


>gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
 gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
          Length = 234

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 108/238 (45%), Gaps = 19/238 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R++   +  ++   GS L   GDT+ I   ++    +E+    L GT +
Sbjct: 2   IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASV----EEKVPPFLRGTGQ 57

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +        G  + R     RL  R++   +  TA    T+ I  
Sbjct: 58  GWITAEYAMLPRATAQRMVREAARGKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++ ++DG +  A++ G+ +AL      M+    +   +A +++G+V    D  +L D++ 
Sbjct: 118 DVIQADGGTRTASITGAFVALYRALEKMEKLEAVRSFLAAVSVGIV----DGTVLLDLNY 173

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +ED +  +D  V   + G    +Q   +    + + +   L  A +G + ++++  +V
Sbjct: 174 EEDSMAEVDMNVVMNEKGEFAEVQGSAEGRPFTRDELDRMLNLASKGIMELISKQKEV 231



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 81/225 (36%), Gaps = 19/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+    I + ++G+ L  +G+T V+ T   +  +     G     +T  Y     A 
Sbjct: 13  REVKITLDYI-KHAEGSCLIEFGDTKVICTASVEEKVPPFLRGTGQGWITAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
            +       R  + T     I R+I RS+R         E    +  +V+Q D       
Sbjct: 72  AQRMVREAAR-GKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLSGLPFEGP------VVGAQVDYINGQYVLNPRLDED---QGSLDLFVS 179
            S+  A  AL  +    E        +    V  ++G  +L+   +ED   +  +++ ++
Sbjct: 129 ASITGAFVALYRALEKMEKLEAVRSFLAAVSVGIVDGTVLLDLNYEEDSMAEVDMNVVMN 188

Query: 180 GTQD-AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              + A +    E    + D +   +         +I    ++ K
Sbjct: 189 EKGEFAEVQGSAEGRPFTRDELDRMLNLASKGIMELISKQKEVLK 233


>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 245

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+   G   +  GS+L   GDT+ +   +      E     L G  + 
Sbjct: 6   RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFT----EGVPRWLKGEGKG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATG  S      G    R     RL  R++  V+   A    T+ +  +
Sbjct: 62  WVTAEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A++ G+ +AL D             +  P+   V+ I++G++    D   
Sbjct: 122 VLQADGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGII----DGTP 177

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T SG    +Q   +      N +   L  A  G   +   
Sbjct: 178 MLDLPYTEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARI 237

Query: 535 MSKVLSE 541
             + L E
Sbjct: 238 QRESLEE 244



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 84/234 (35%), Gaps = 28/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  + Q++G+ L  +G+T VL T  +   +     G+    +T  Y     A 
Sbjct: 16  RPITITRGW-SNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTAEYAMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G         + +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 75  G-TRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQADGG--TRT 131

Query: 129 VSMVAASAALML-------------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  A  AL               S  P +  V    V  I+G  +L+    ED   + 
Sbjct: 132 ASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYTEDVRAET 191

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +++ V+G+    + V+  A       + +   +         +     +  + 
Sbjct: 192 DMNVVVTGS-GKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQRESLEE 244


>gi|253995547|ref|YP_003047611.1| ribonuclease PH [Methylotenera mobilis JLW8]
 gi|253982226|gb|ACT47084.1| ribonuclease PH [Methylotenera mobilis JLW8]
          Length = 241

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + + +R   R    +R++       +   GS L   GDT  +   ++    DE+    L 
Sbjct: 1   MQQNIRPSQRACNQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASV----DEKVPGFLK 56

Query: 368 GTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           G  +      Y  LP +TG         G  S R     RL  R++  ++        ++
Sbjct: 57  GKGQGWVTAEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDD 472
           +I  ++ ++DG +  A++ G+ +AL D           +  P+   VA I++G+ +    
Sbjct: 117 QIDCDVIQADGGTRTASITGAYVALHDAISFLLKSGKISESPLKDSVAAISVGVYQGTP- 175

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              + D+   ED     D  V  T   G   +Q   +    + + M   L  A  G   +
Sbjct: 176 ---VLDLDYIEDSDCDTDMNVVMTGKGGFVEIQGTAEGEPFARDAMNAMLDLAAHGIQQL 232

Query: 532 LNEMSKV 538
           + E +K 
Sbjct: 233 IIEQNKA 239



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 82/218 (37%), Gaps = 25/218 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T VL T   D  +     G+    +T  Y     + G        R 
Sbjct: 26  KHAEGSVLVKFGDTHVLCTASVDEKVPGFLKGKGQGWVTAEYGMLPRSTGSRMDREAAR- 84

Query: 82  SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I RS+R +    K  +   Q+  +V+Q D        S+  A  AL 
Sbjct: 85  GKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQADGG--TRTASITGAYVALH 142

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                      +S  P +  V    V    G  VL+    ED      +++ ++G +   
Sbjct: 143 DAISFLLKSGKISESPLKDSVAAISVGVYQGTPVLDLDYIEDSDCDTDMNVVMTG-KGGF 201

Query: 186 LMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + ++   E    + D +   +    +  + +I   +K 
Sbjct: 202 VEIQGTAEGEPFARDAMNAMLDLAAHGIQQLIIEQNKA 239


>gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51]
 gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51]
          Length = 240

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+   +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGE----A 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +            L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QQAALAD 240



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ +    + V+  A       +     +         + E        
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFELQQAALAD 240


>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
 gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
 gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
          Length = 247

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 92/249 (36%), Gaps = 23/249 (9%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            +      R DGR  + +R +    G      GS L   G+T+ +   +     +     
Sbjct: 3   DMTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTAS----AEIGVPR 58

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               +        Y  LP AT + +      G    R     RL  R++   +  +    
Sbjct: 59  FKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGE 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKD 469
            T+ I  ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G++  
Sbjct: 119 NTINIDCDVLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVI-- 176

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
             D  +  D+  +ED    +D  V   +     +Q   +      + +   L  A++G  
Sbjct: 177 --DGAVCLDLPYEEDSRADVDMNVIMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCT 234

Query: 530 HILNEMSKV 538
            ++      
Sbjct: 235 ELVAAQKAA 243



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 25/226 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLKDGQDFFP--LTVNYQERTYAV 70
           R +K+  G       G+VL  +G T V+ T   +    +  +D     LT  Y     A 
Sbjct: 21  RTVKITRG-FTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAAT 79

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPH 127
             + P   +R   +       ISR+I RS+R      +  +N   +  +V+Q D      
Sbjct: 80  LDRNPRESMR--GKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQADGG--TR 135

Query: 128 VVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
             S+  A  AL   +S L         P + PV    V  I+G   L+ P  ++ +  +D
Sbjct: 136 TASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEEDSRADVD 195

Query: 176 LFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
           + V       + ++      +   D +   + F    C  ++ A  
Sbjct: 196 MNVIMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQK 241


>gi|190149324|ref|YP_001967849.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307244856|ref|ZP_07526955.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253810|ref|ZP_07535664.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258266|ref|ZP_07540009.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307262637|ref|ZP_07544267.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|226736878|sp|B3GZP5|RNPH_ACTP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189914455|gb|ACE60707.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306854301|gb|EFM86507.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863294|gb|EFM95234.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867726|gb|EFM99571.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306872060|gb|EFN03774.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 238

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+   VR +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIV----DGNAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A +G   +L+  
Sbjct: 173 CDLEYVEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPVKI-TRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               ++  A  AL            L   P +G V    V  ++G  V +    ++    
Sbjct: 125 TRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIVDGNAVCDLEYVEDSNAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKL 221
            D+ V   +D  L VE++     E      +L  +   H     +++A  K 
Sbjct: 185 TDMNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKA 235


>gi|222147322|ref|YP_002548279.1| ribonuclease PH [Agrobacterium vitis S4]
 gi|254808101|sp|B9JZG3|RNPH_AGRVS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221734312|gb|ACM35275.1| ribonuclease PH [Agrobacterium vitis S4]
          Length = 239

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS +    +   GS L   GDT  +   +L    +++    L  T +
Sbjct: 1   MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASL----EDRTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D    +           +   VA I+ G+         
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLKWMESRNIIKVDRVLKDHVAAISCGIFAAQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    S+   +  L  A+ G   +++ 
Sbjct: 173 VIDLDYLEDSAAETDANFVMTGTGGIVEIQGTAEGKPFSQEEFLTLLGLAQTGIAELVDL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     A 
Sbjct: 12  RKISFERN-FSKHAEGSCLVKFGDTHVLCTASLEDRTPPWLRNTGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     ++RE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL                   +  V          Q V++    ED   
Sbjct: 125 TRTASITGAWIALHDCLKWMESRNIIKVDRVLKDHVAAISCGIFAAQPVIDLDYLEDSAA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++GT   ++ ++   E    S++  L  +         +++   +   
Sbjct: 185 ETDANFVMTGT-GGIVEIQGTAEGKPFSQEEFLTLLGLAQTGIAELVDLQKQAIA 238


>gi|152972490|ref|YP_001337636.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206579777|ref|YP_002235994.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238897086|ref|YP_002921832.1| ribonuclease PH [Klebsiella pneumoniae NTUH-K2044]
 gi|290511794|ref|ZP_06551162.1| ribonuclease PH [Klebsiella sp. 1_1_55]
 gi|166228287|sp|A6TFN5|RNPH_KLEP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736914|sp|B5XTF9|RNPH_KLEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150957339|gb|ABR79369.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206568835|gb|ACI10611.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238549414|dbj|BAH65765.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|289775584|gb|EFD83584.1| ribonuclease PH [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYIEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGEAICDLEYIEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
 gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
          Length = 256

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +    G      GS L   G+T+ +   ++    +E        +   
Sbjct: 18  RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASV----EEGVPRFKKDSGEG 73

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T E        G    R     RL  RA+   +        T+ I  +
Sbjct: 74  WLTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCD 133

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D +   
Sbjct: 134 VLQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGII----DGVPCL 189

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  VA T  G    +Q   +    +   +   L  A+ G   ++    
Sbjct: 190 DLPYEEDSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQR 249

Query: 537 KVLSE 541
             L++
Sbjct: 250 AALAQ 254



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++  G  +  + G+VL  +G T V+ T   +  +   K       LT  Y     + 
Sbjct: 28  RPVRITRGFTSNPA-GSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTAEYAMLPAST 86

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             ++P   ++   +       ISR++ R++R      +  +N   +  +V+Q D      
Sbjct: 87  HERMPRESMK--GKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQADGG--TR 142

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
             ++  A  AL  +           G P   PV    V  I+G   L+ P  ++ +  +D
Sbjct: 143 TAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEEDSRADVD 202

Query: 176 LFVSGTQDA-VLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V+ T +   + ++      + + + +   +       + +IEA       
Sbjct: 203 MNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQ 254


>gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36]
 gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36]
          Length = 237

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALKLAVNKLMKAGDVVSDPLVDPVAAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T +G +  +QM  +    S + M   +  A++G   ++ + 
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEKQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAATA 237



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 81/234 (34%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RAVSIETG-FTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL L            S  P   PV         GQ VL+   P   E 
Sbjct: 125 TRCASITGGWVALKLAVNKLMKAGDVVSD-PLVDPVAAISCGIYAGQPVLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
               +  ++GT   + + +  E +  S D +   +         ++E       
Sbjct: 184 GVDGNFIMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEKQKAATA 237


>gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260]
 gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260]
          Length = 248

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 27/248 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +  + G  +   GS+    G TQ +   T+    +++    L G+ + 
Sbjct: 3   RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATV----EDKVPPFLRGSGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT + +      G P+ R     RL  R++   +   A    T+ I  +
Sbjct: 59  WVSAEYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA            +P+   VA +++GL+        L 
Sbjct: 119 VIQADGGTRTASITGAFVALVDALRWIRDRNGLPSLPLRHQVAAVSVGLL----GGCPLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           D+  +ED    +D  V   + G    I     D      S + ++   +Q       +  
Sbjct: 175 DLCYEEDSGAEVDCNVVMAEDGRFVEIQGTGEDALFSRASFDALLDLARQGIAALHRLQR 234

Query: 534 EMSKVLSE 541
               +  E
Sbjct: 235 STLDLSPE 242



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RPL+LE G   R ++G+    +G T VL T   +  +     G     ++  Y     A 
Sbjct: 13  RPLELERGC-NRYAEGSARIAFGHTQVLCTATVEDKVPPFLRGSGKGWVSAEYAMLPRAT 71

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             + P    R   RP      I R+I RS+R         E    +  +V+Q D      
Sbjct: 72  HQRTPRDSTR--GRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCDVIQADGG--TR 127

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
             S+  A  AL+           L  LP    V    V  + G  +L+   +ED G
Sbjct: 128 TASITGAFVALVDALRWIRDRNGLPSLPLRHQVAAVSVGLLGGCPLLDLCYEEDSG 183


>gi|313894107|ref|ZP_07827673.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441671|gb|EFR60097.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 251

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 108/256 (42%), Gaps = 22/256 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T          G  + R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD---------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+D            PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T SG +  +Q   + G  + + +   L  A+     ++ +  +
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGDMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232

Query: 538 VLSESRLQLGEFTPRV 553
            L  +  ++G+  P  
Sbjct: 233 ALGSTADKVGKVYPTA 248



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 28/237 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL   G+T V+ T   + S+     G     +T  Y     + 
Sbjct: 12  RPIKI-TRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVTAEYSLLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -QTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
            S+  A  AL+ +           P         V       + +   +ED      +++
Sbjct: 128 ASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGPITDLCYEEDSAAIVDMNV 187

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL----AKMCAK 227
             +G+ D ++ V+      +   D +   +         ++    +     A    K
Sbjct: 188 VRTGSGD-MVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREALGSTADKVGK 243


>gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Pseudomonas entomophila L48]
          Length = 253

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 25/253 (9%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           V + +  R  GR ++ +R I       +   GS L   GDT+ I  V++    +      
Sbjct: 9   VQVSQMKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRF 64

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           L G  +      Y  LP +TGE ++     G    R +   RL  R++   L  +     
Sbjct: 65  LKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDI 124

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKD 469
           TL +  ++ ++DG +  A++ G+ +AL D             G P+   +A +++G+ + 
Sbjct: 125 TLYVDCDVIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQG 184

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGR 528
                 + D+   ED     D  V  T   G   +Q   +            L  A++G 
Sbjct: 185 E----AVLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGM 240

Query: 529 LHILNEMSKVLSE 541
             I       L++
Sbjct: 241 GEIFELQQAALAD 253



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 26  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRST 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 85  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGG--TRT 141

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 142 ASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLEDSAAETD 201

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ +    + V+  A       +     +         + E        
Sbjct: 202 LNVVMT-SAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 253


>gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
 gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
          Length = 237

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + ++A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         L
Sbjct: 117 DVLQADGGTRCASITGGWIALRLAVNKLMKAGDVVSDPLVDPVAAVSCGIYAGQP----L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    + + M   +  A++G   +    
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSGKLIEIQMSAEGSTYTRDQMNQLMDLAEKGVGELAAIQ 232

Query: 536 SKVLS 540
             V +
Sbjct: 233 KSVTA 237



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 33/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RAVSIETG-FTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL L            S  P   PV         GQ +L+   P   E 
Sbjct: 125 TRCASITGGWIALRLAVNKLMKAGDVVSD-PLVDPVAAVSCGIYAGQPLLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
               +  ++G+   + + +  E +  + D +   +         +  AI K  
Sbjct: 184 GVDGNFIMTGSGKLIEIQMSAEGSTYTRDQMNQLMDLAEKGVGEL-AAIQKSV 235


>gi|86356020|ref|YP_467912.1| ribonuclease PH [Rhizobium etli CFN 42]
 gi|123513255|sp|Q2KDA1|RNPH_RHIEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86280122|gb|ABC89185.1| ribonuclease PH protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +E+    L  T +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D    +           +   VA I+ G+  +      
Sbjct: 117 DVIQADGGTRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGVFANQ----A 172

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE      ++ AK G   ++  
Sbjct: 173 VIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFSSLMRLAKNGIGELVAL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     A 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+     AL                   +  V          Q V++    ED   
Sbjct: 125 TRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGVFANQAVIDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G    ++ ++   E    SE+     +    N    ++    +   
Sbjct: 185 ETDANFVMTG-AGGIVEIQGTAEGTPFSEEEFSSLMRLAKNGIGELVALQKQAIA 238


>gi|239941573|ref|ZP_04693510.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379]
 gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
          Length = 245

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA I++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G + +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAAL 234

Query: 535 MSKVLSESR 543
               L+ +R
Sbjct: 235 QRDALATTR 243



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P    V    V  ++G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|238020106|ref|ZP_04600532.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
 gi|237863630|gb|EEP64920.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
          Length = 251

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 22/256 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T          G  + R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD---------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+D            PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T SG +  +Q   + G  + + +   L  A+     ++ +  +
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232

Query: 538 VLSESRLQLGEFTPRV 553
           VL  +  ++G+  P  
Sbjct: 233 VLGTTADKVGKVYPTA 248



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 28/237 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL   G+T V+ T   + S+     G     +T  Y     + 
Sbjct: 12  RPIKI-TRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVTAEYSLLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -QTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
            S+  A  AL+ +           P         V       + +   +ED      +++
Sbjct: 128 ASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGPITDLCYEEDSAAIVDMNV 187

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL----AKMCAK 227
             +G+ + ++ V+      +   D +   +         ++    ++    A    K
Sbjct: 188 VRTGSGN-MVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGTTADKVGK 243


>gi|118418871|gb|ABK87290.1| RNAse PH [Bacillus thuringiensis str. Al Hakam]
          Length = 251

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 112/261 (42%), Gaps = 26/261 (9%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +R + L   +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+ 
Sbjct: 1   MRRLFL---MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERV 53

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
              + G  +      Y  +P AT +     S  G  + R +   RL  RA+  V+   A 
Sbjct: 54  PPFMRGEGKGWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEAL 113

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLV 467
              T+ I  ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V
Sbjct: 114 GERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIV 173

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKR 526
           ++     ++ D++  ED    +D  V  T  G    +Q   +    S   +   L  A++
Sbjct: 174 EEQG---VVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQ 230

Query: 527 GRLHILNEMSKVLSESRLQLG 547
           G   +++   + L +    + 
Sbjct: 231 GIFQLIDIQKEALGDIVSHIE 251



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 18  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 77  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 133

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 134 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 193

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 194 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEA 242


>gi|52424307|ref|YP_087444.1| ribonuclease PH [Mannheimia succiniciproducens MBEL55E]
 gi|61215869|sp|Q65W01|RNPH_MANSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52306359|gb|AAU36859.1| Rph protein [Mannheimia succiniciproducens MBEL55E]
          Length = 240

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R     R I       +   GS L   GDT+ I   T+    ++     L G  +
Sbjct: 1   MRPNNRAVNEPRPIKITRHYTKHAEGSVLVEFGDTKVICTATV----EDSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++  ++  TA    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMLREAAKGKQGGRTMEIQRLIARSLRAMVDLTALGERSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALTDAINALVENGTLKTSPLKGLVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I +  
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCNMIFDAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 RRA 235



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 29/235 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T V+ T   + S+     GQ    +T  Y     + 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGDTKVICTATVEDSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             ++     +   +     + I R+I RS+R +       E  +    +V+Q D      
Sbjct: 71  HSRMLREAAK--GKQGGRTMEIQRLIARSLRAMVDLTALGERSITLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL   ++ L         P +G V    V  +NG+ V +    ED   +  
Sbjct: 127 TASITGACVALTDAINALVENGTLKTSPLKGLVAAVSVGIVNGEAVCDLEYVEDSAAETD 186

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMC 225
           +++ +      ++ V+   E    S + +L  +      C  + +A  + LA  C
Sbjct: 187 MNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCNMIFDAQRRALAADC 240


>gi|269797499|ref|YP_003311399.1| ribonuclease PH [Veillonella parvula DSM 2008]
 gi|269094128|gb|ACZ24119.1| ribonuclease PH [Veillonella parvula DSM 2008]
          Length = 251

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 22/256 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T          G  + R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD---------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+D            PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T SG +  +Q   + G  + + +   L  A+     ++ +  +
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232

Query: 538 VLSESRLQLGEFTPRV 553
           VL  +  ++G+  P  
Sbjct: 233 VLGSTADKVGKVYPTA 248



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 28/237 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL   G+T V+ T   + S+     G     +T  Y     + 
Sbjct: 12  RPIKI-TRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVTAEYSLLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -QTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
            S+  A  AL+ +           P         V       + +   +ED      +++
Sbjct: 128 ASITGAFVALVDAVDFTFGGAGKFPITDFCAAISVGIGPEGPITDLCYEEDSAAIVDMNV 187

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL----AKMCAK 227
             +G+ + ++ V+      +   D +   +         ++    ++    A    K
Sbjct: 188 VRTGSGN-MVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGSTADKVGK 243


>gi|218556206|ref|YP_002389119.1| ribonuclease PH [Escherichia coli IAI1]
 gi|218697364|ref|YP_002405031.1| ribonuclease PH [Escherichia coli 55989]
 gi|254038843|ref|ZP_04872895.1| ribonuclease PH [Escherichia sp. 1_1_43]
 gi|218354096|emb|CAV00651.1| ribonuclease PH [Escherichia coli 55989]
 gi|218362974|emb|CAR00611.1| ribonuclease PH [Escherichia coli IAI1]
 gi|226838808|gb|EEH70835.1| ribonuclease PH [Escherichia sp. 1_1_43]
          Length = 246

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  
Sbjct: 8   NMRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQG 63

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ + 
Sbjct: 64  QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 123

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        
Sbjct: 124 CDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----A 179

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+  
Sbjct: 180 ICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVAT 239

Query: 535 MSKV 538
               
Sbjct: 240 QKAA 243



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 28/217 (12%)

Query: 1   MFDVHTVEIEWAGR------PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK--- 51
           MF      +  AGR      P+ L T    + ++G+VL  +G+T VL T   +  +    
Sbjct: 1   MFQAGDFNMRPAGRSNNQVRPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL 59

Query: 52  DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET 111
            GQ    +T  Y     +           + +     + I R+I R++R         E 
Sbjct: 60  KGQGQGWITAEYGMLPRST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEF 118

Query: 112 QVI--INVMQHDLESSPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYIN 158
            +    +V+Q D        S+  A  AL            L   P +G V    V  +N
Sbjct: 119 TITLDCDVLQADGG--TRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVN 176

Query: 159 GQYVLNPRL-DEDQGSLDLFVSGTQDA-VLMVELEAN 193
           G+ + +    ++     D+ V  T+D  ++ V+  A 
Sbjct: 177 GEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 213


>gi|218551172|ref|YP_002384963.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218560715|ref|YP_002393628.1| ribonuclease PH [Escherichia coli S88]
 gi|218691927|ref|YP_002400139.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218702410|ref|YP_002410039.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218707277|ref|YP_002414796.1| ribonuclease PH [Escherichia coli UMN026]
 gi|26110719|gb|AAN82903.1|AE016769_18 Ribonuclease PH [Escherichia coli CFT073]
 gi|91074734|gb|ABE09615.1| ribonuclease PH [Escherichia coli UTI89]
 gi|218358713|emb|CAQ91369.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218367484|emb|CAR05266.1| ribonuclease PH [Escherichia coli S88]
 gi|218372396|emb|CAR20270.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218429491|emb|CAR10314.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218434374|emb|CAR15299.1| ribonuclease PH [Escherichia coli UMN026]
          Length = 246

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  
Sbjct: 8   NMRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQG 63

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ + 
Sbjct: 64  QGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLD 123

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        
Sbjct: 124 CDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----A 179

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+  
Sbjct: 180 VCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVAT 239

Query: 535 MSKV 538
               
Sbjct: 240 QKAA 243



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 28/217 (12%)

Query: 1   MFDVHTVEIEWAGR------PLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK--- 51
           MF      +  AGR      P+ L T    + ++G+VL  +G+T VL T   +  +    
Sbjct: 1   MFQAGDFNMRPAGRSNNQVRPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFL 59

Query: 52  DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET 111
            GQ    +T  Y     +           + +     + I R+I R++R         E 
Sbjct: 60  KGQGQGWITAEYGMLPRST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEF 118

Query: 112 QVI--INVMQHDLESSPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYIN 158
            +    +V+Q D        S+  A  AL            L   P +G V    V  +N
Sbjct: 119 TITLDCDVLQADGG--TRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVN 176

Query: 159 GQYVLNPRL-DEDQGSLDLFVSGTQDA-VLMVELEAN 193
           G+ V +    ++     D+ V  T+D  ++ V+  A 
Sbjct: 177 GEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 213


>gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
 gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
          Length = 251

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 14  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 69

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 70  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 130 DVLQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGE----AI 185

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 186 CDLEYIEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQ 245

Query: 536 SKV 538
              
Sbjct: 246 KAA 248



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     + 
Sbjct: 25  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWITAEYGMLPRST 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 84  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 140

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 141 ASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGEAICDLEYIEDSAAETDM 200

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 201 NVVMTEDGRIIEVQGTAE 218


>gi|32035564|ref|ZP_00135495.1| COG0689: RNase PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207543|ref|YP_001052768.1| ribonuclease PH [Actinobacillus pleuropneumoniae L20]
 gi|165975512|ref|YP_001651105.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303251878|ref|ZP_07338049.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247031|ref|ZP_07529085.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307260507|ref|ZP_07542201.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|166228262|sp|A3MYC7|RNPH_ACTP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736879|sp|B0BRL3|RNPH_ACTPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126096335|gb|ABN73163.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165875613|gb|ABY68661.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302649308|gb|EFL79493.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856483|gb|EFM88632.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306869819|gb|EFN01602.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 238

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+   VR +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIV----DGNAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A +G   +L+  
Sbjct: 173 CDLEYVEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPVKI-TRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               ++  A  AL            L   P +G V    V  ++G  V +    ++    
Sbjct: 125 TRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIVDGNAVCDLEYVEDSNAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V   +D  L VE++     E      +L  +   H     +++A  K   +
Sbjct: 185 TDMNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALAL 238


>gi|303250534|ref|ZP_07336731.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251576|ref|ZP_07533483.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650522|gb|EFL80681.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861040|gb|EFM93046.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 238

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+   VR +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  V+        T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKVLGERTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIV----DGNAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A +G   +L+  
Sbjct: 173 CDLEYIEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     + 
Sbjct: 12  RPVKI-TRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    V  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKVLGERTITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               ++  A  AL            L   P +G V    V  ++G  V +    ++    
Sbjct: 125 TRTAAITGACVALHDAMSKLVADGVLKENPMKGLVAAISVGIVDGNAVCDLEYIEDSNAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V   +D  L VE++     E      +L  +   H     +++A  K   +
Sbjct: 185 TDMNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALAL 238


>gi|167036328|ref|YP_001671559.1| ribonuclease PH [Pseudomonas putida GB-1]
 gi|189043769|sp|B0KQ94|RNPH_PSEPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166862816|gb|ABZ01224.1| ribonuclease PH [Pseudomonas putida GB-1]
          Length = 240

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 95/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D            AG P+   +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALCDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQGE----A 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +            L  A++G   I   
Sbjct: 174 VLDLDYPEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QQAALAD 240



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 23/231 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D  +    
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGGTRTAS 130

Query: 129 V--SMVAASAALML--------SGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLD 175
           +  +MVA   AL +        +G P +  +    V    G+ VL+   P     +  L+
Sbjct: 131 ITGAMVALCDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDYPEDSAAETDLN 190

Query: 176 LFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + ++ +    + V+  A       +     +         + E        
Sbjct: 191 VVMT-SAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240


>gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48]
          Length = 240

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+   +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGE----A 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +            L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QQAALAD 240



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ +    + V+  A       +     +         + E        
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 240


>gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 257

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 24/256 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R DGR    +R +S Q G      GS L   G T+ +   ++    +E+    L G+ 
Sbjct: 8   ESRADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASV----EEKVPPFLRGSD 63

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           R      Y+ LP +T          G  + R     RL  R++   +   +    T+ I 
Sbjct: 64  RGWVTAEYSLLPRSTSTRVPRDISRGKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWID 123

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A V G  +AL+D             +P+   VA +++G +       +
Sbjct: 124 CDVLQADGGTRSAAVTGGFVALVDALRHLWRIGKLKSIPLRSYVAAVSVGKIS----GKL 179

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L+D+  DED    +D  V     G +  +Q   +    S + M   L  A R    ++  
Sbjct: 180 LTDLCYDEDSRAEVDMNVVMDGLGRLIEIQGTGEKDTFSRDEMNGMLDLAFRSVEELIVL 239

Query: 535 MSKVLSESRLQLGEFT 550
             + L     ++    
Sbjct: 240 QERALEMDGEEMEAIA 255



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 23/222 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L ++G+T VL T   +  +     G D   +T  Y     +        + R  +
Sbjct: 32  AEGSCLVSFGKTKVLCTASVEEKVPPFLRGSDRGWVTAEYSLLPRSTSTRVPRDISR-GK 90

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM-- 139
                  I R++ RS+R         E    +  +V+Q D        ++     AL+  
Sbjct: 91  LNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDCDVLQADGG--TRSAAVTGGFVALVDA 148

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                    L  +P    V    V  I+G+ + +   DED   +  +++ + G    + +
Sbjct: 149 LRHLWRIGKLKSIPLRSYVAAVSVGKISGKLLTDLCYDEDSRAEVDMNVVMDGLGRLIEI 208

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
               E +  S D +   +       + +I    +  +M  +E
Sbjct: 209 QGTGEKDTFSRDEMNGMLDLAFRSVEELIVLQERALEMDGEE 250


>gi|154254011|ref|YP_001414835.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
 gi|171769691|sp|A7HZ45|RNPH_PARL1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154157961|gb|ABS65178.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
          Length = 238

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G+ +   GS L   GDT  +   +L    +E+    L G  +
Sbjct: 1   MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASL----EERVPPFLKGGGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHERMRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVP-ISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL               P +   VA I+ G+ +     + +
Sbjct: 117 DVLQADGGTRTASITGAWVALHQCIEWMRARSMISAPVLKDHVAAISCGIYQ----GVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +    S+   +  L  AK     ++   
Sbjct: 173 VDLDYAEDSTADTDANFVITGKGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQ 232

Query: 536 SKVLSE 541
            + +S 
Sbjct: 233 KEAVSA 238



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 32/233 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E G +A+ ++G+ L  +G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RTVSFEPG-VAKHAEGSCLVRFGDTHVLCTASLEERVPPFLKGGGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +     +RRE    + +     I R++ RS+R +       E Q+    +V+Q D    
Sbjct: 71  HER----MRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +S    +  V         G  V++    ED    
Sbjct: 125 TRTASITGAWVALHQCIEWMRARSMISAPVLKDHVAAISCGIYQGVPVVDLDYAEDSTAD 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
              +  ++G +  +  ++   E    S++  L  +         ++    +  
Sbjct: 185 TDANFVITG-KGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQKEAV 236


>gi|332968500|gb|EGK07563.1| tRNA nucleotidyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 101/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+ + +R ++ +    +   GS L   GDT+ +   ++ +         L G  +
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVESG----VPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R     RL  R++  ++        T+ +  
Sbjct: 57  GWVTAEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA +++G VK+G+   IL
Sbjct: 117 DVLQADGGTRTASITGAAIALIDALESLQQKKKLKADPLVGLVAAVSVG-VKNGE---IL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED     D  V  T  G    +Q   +    +       L  A++G   ++   
Sbjct: 173 LDLNYEEDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLIKLQ 232

Query: 536 SKV 538
              
Sbjct: 233 QTA 235



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           R +  E     + ++G+VL  +G+T VL T  V     +   G+    +T  Y     A 
Sbjct: 12  RTVTFERN-YTKHAEGSVLVCFGDTKVLCTASVESGVPRWLKGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +   +K  +N   +  +V+Q D       
Sbjct: 71  N-TRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL 176
            S+  A+ AL+           L   P  G V    V   NG+ +L+   +ED     DL
Sbjct: 128 ASITGAAIALIDALESLQQKKKLKADPLVGLVAAVSVGVKNGEILLDLNYEEDSSCDTDL 187

Query: 177 FVSGT-QDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
            V  T +   + ++  A +   +       +         +I+   
Sbjct: 188 NVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLIKLQQ 233


>gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619]
 gi|226736926|sp|B1J4L4|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619]
          Length = 240

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL+D            AG P+   +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQGE----A 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +            L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QQVALAD 240



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 23/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D  +    
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGGTRTAS 130

Query: 129 V--SMVAASAALML--------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLD 175
           +  +MVA   AL +        +G P +  +    V    G+ VL+    ED   +  L+
Sbjct: 131 ITGAMVALVDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDYLEDSAAETDLN 190

Query: 176 LFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
           + ++ +    + V+  A       +     +         + E   
Sbjct: 191 VVMT-SAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQ 235


>gi|169632071|ref|YP_001705807.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii SDF]
 gi|169797749|ref|YP_001715542.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|184156383|ref|YP_001844722.1| ribonuclease PH [Acinetobacter baumannii ACICU]
 gi|213155451|ref|YP_002317496.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|215485100|ref|YP_002327341.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|239503769|ref|ZP_04663079.1| ribonuclease PH [Acinetobacter baumannii AB900]
 gi|260552994|ref|ZP_05825909.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260557749|ref|ZP_05829963.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|301347449|ref|ZP_07228190.1| ribonuclease PH [Acinetobacter baumannii AB056]
 gi|301513309|ref|ZP_07238546.1| ribonuclease PH [Acinetobacter baumannii AB058]
 gi|301595797|ref|ZP_07240805.1| ribonuclease PH [Acinetobacter baumannii AB059]
 gi|332852852|ref|ZP_08434434.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332866699|ref|ZP_08437161.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332873553|ref|ZP_08441502.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
 gi|226736873|sp|B7H2J6|RNPH_ACIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736874|sp|B7IBN8|RNPH_ACIB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736875|sp|B2I029|RNPH_ACIBC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736876|sp|B0VMP4|RNPH_ACIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736877|sp|B0V5W8|RNPH_ACIBY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226737251|sp|A3M0U3|RNPH_ACIBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169150676|emb|CAM88586.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|169150863|emb|CAO99466.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii]
 gi|183207977|gb|ACC55375.1| RNase PH [Acinetobacter baumannii ACICU]
 gi|193075957|gb|ABO10537.2| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
 gi|213054611|gb|ACJ39513.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|213986624|gb|ACJ56923.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|260405236|gb|EEW98733.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260408922|gb|EEX02226.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|322506253|gb|ADX01707.1| RNase PH [Acinetobacter baumannii 1656-2]
 gi|323516129|gb|ADX90510.1| ribonuclease PH [Acinetobacter baumannii TCDC-AB0715]
 gi|332728966|gb|EGJ60317.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332734468|gb|EGJ65583.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332738250|gb|EGJ69128.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
          Length = 238

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +  G  + R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTASITGAAVALVDAMNVLLAQKKIKQDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     GQ    +T  Y     + 
Sbjct: 12  REVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             +      R   + T     I R+I RS+R +    K  +N   +  +V+Q D      
Sbjct: 71  HSRCDREAAR--GKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A+ AL+           +   P +G V    V     + +L+   +ED   Q  
Sbjct: 127 TASITGAAVALVDAMNVLLAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           L++ ++   + + +    E    +       +         +I+   + 
Sbjct: 187 LNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEA 235


>gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H]
 gi|123634261|sp|Q48AN3|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H]
          Length = 237

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R ++          GS L   GDT+ I   T+    +      L G  +
Sbjct: 1   MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATV----EVGVPRFLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G  S R +   RL  RA+   +   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYKGEP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  V  TD+G +  +Q   +    S   M   L+ AK G   + +  
Sbjct: 173 ADLDYPEDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQ 232

Query: 536 SKVLS 540
              LS
Sbjct: 233 KAALS 237



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 34/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV----YDRSLKDGQDFFPLTVNYQERTYA 69
           RP+ + T +    ++G+VL  +G+T V+ T        R LK GQ    +T  Y     +
Sbjct: 12  RPVTI-TRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLK-GQGKGWVTAEYGMLPRS 69

Query: 70  VGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLES 124
                   +RRE    + +   + ISR+I R++R     K    N   V  +V+Q D   
Sbjct: 70  T----HTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLN---PRLDED 170
                ++  A  AL+ +        +    P +  +    V    G+ V +   P     
Sbjct: 125 -TRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYKGEPVADLDYPEDSAA 183

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
              +++ ++ T   ++ V+  A +   S + +   +    N    + +   
Sbjct: 184 DTDMNVVMTDT-GKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQK 233


>gi|303229137|ref|ZP_07315938.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516150|gb|EFL58091.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
          Length = 257

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 22/254 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    +E     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATI----EENVPRWLKGSSQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T       +  G  + R +   RL  RA+  V+   A    ++ +  
Sbjct: 57  GWVTAEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD---------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+D            PI+   A I++G+  +G     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAIDYTFGGFGKFPITDFCAAISVGIGPEGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T +G +  +Q   + G  S + +   L  A+     ++     
Sbjct: 173 LCYEEDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRD 232

Query: 538 VLSESRLQLGEFTP 551
           VL     ++G+  P
Sbjct: 233 VLGSVADKIGKVYP 246



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 24/250 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL   G+T V+ T   + ++     G     +T  Y     + 
Sbjct: 12  RPIKI-TRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSSQGWVTAEYSLLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            K          + T   + I R+I R++R +       E    V  +V+Q D       
Sbjct: 71  -KTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
            S+  A  AL+ +           P         V       + +   +ED      +++
Sbjct: 128 ASITGAFVALVDAIDYTFGGFGKFPITDFCAAISVGIGPEGPITDLCYEEDSAAVVDMNV 187

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIVID 233
             +G  + + +    E    S D +   +    +    ++     +    A +   +  D
Sbjct: 188 VRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRDVLGSVADKIGKVYPD 247

Query: 234 SKDFSKLEEE 243
           +   +   EE
Sbjct: 248 APVQTAEGEE 257


>gi|183597211|ref|ZP_02958704.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
 gi|188023525|gb|EDU61565.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
          Length = 237

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR ++ +R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPEGRMADQMRPIKISRNYTKHAEGSVLIEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  + R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D           A  P+   VA +++G+V    D   L
Sbjct: 117 DVIQADGGTRTAAISGACVALVDALNKMVEQGKLAQSPLKSMVAAVSVGIV----DGEAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D G +  +Q   +    S + ++  L  AK G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHDELLSLLALAKTGLGSIFEAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 88/234 (37%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+      + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKISRN-YTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   +RE    + T   + I R+I RS+R      K  +    +  +V+Q D    
Sbjct: 71  N----SRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL+           L+  P +  V    V  ++G+ + +    ED   +
Sbjct: 125 TRTAAISGACVALVDALNKMVEQGKLAQSPLKSMVAAVSVGIVDGEALCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             +++ +      ++ V+   E    S D +L  +         + EA  +  K
Sbjct: 185 TDMNVVM-MDDGRMIEVQGTAEGEPFSHDELLSLLALAKTGLGSIFEAQREALK 237


>gi|157373079|ref|YP_001481068.1| ribonuclease PH [Serratia proteamaculans 568]
 gi|166991086|sp|A8GLF0|RNPH_SERP5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157324843|gb|ABV43940.1| ribonuclease PH [Serratia proteamaculans 568]
          Length = 238

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNALVANGKLKANPMKGLVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S + ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIDTIFQAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 20/197 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL-----E 123
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTAS 129

Query: 124 SSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
            S   V++  A  AL+ +G     P +G V    V  +NG+ + +    ED   +  +++
Sbjct: 130 ISGACVALADALNALVANGKLKANPMKGLVAAVSVGIVNGEALCDLEYVEDSAAETDMNV 189

Query: 177 FVSGTQDAVLMVELEAN 193
            +      ++ V+  A 
Sbjct: 190 VM-MEDGRMIEVQGTAE 205


>gi|271498722|ref|YP_003331747.1| ribonuclease PH [Dickeya dadantii Ech586]
 gi|270342277|gb|ACZ75042.1| ribonuclease PH [Dickeya dadantii Ech586]
          Length = 238

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNGMVASGKLKASPLKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S + ++  L  A++G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KATLAD 238



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL   T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTF-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL------ 122
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDCDVLQADGGTRTAS 129

Query: 123 -----ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
                 +    ++ + AS  L  S  P +G V    V  +NG+ V +    ++     D+
Sbjct: 130 ITGACVALADALNGMVASGKLKAS--PLKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAIS 219
            V  T+D  + +E++     E    D +L  +       + ++ A  
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQK 233


>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
           3091]
 gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 232

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 13/234 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M ++ +R DGR   T+R++  +VG+L    GS+    G+ + +V V  G RE      S 
Sbjct: 1   MTNEFIRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGV-YGPREIHSKKHS- 58

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                      YN  P +  E  R G P+RR     +L   AI P +        ++ I 
Sbjct: 59  -KPDGAVLRCKYNMAPFSVKERKRPG-PNRRSTEISKLISEAITPNIFLEKYPRASIDIS 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ E++G +    + G+SLAL DA +P+   ++  A+G V D     I+ D+S  ED  
Sbjct: 117 IEVLEAEGGTRCLGIVGASLALADAEIPMKDLISACAVGKVDD----HIVLDLSEQEDQT 172

Query: 487 GHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           G  D  +A       IT +QMD   G +++     AL  A  G  +I     + 
Sbjct: 173 GQADMPLAIIPRTGEITFLQMD---GNLTQEEFEEALDLAYDGCYYINQLQKEA 223



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS----LKDGQDFFPLTVNYQERTYA 69
           R +K+E G +   +DG+     G   +L  V   R          D   L   Y    ++
Sbjct: 17  RNMKMEVGVL-NNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGAVLRCKYNMAPFS 75

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P      IS++I  +I P     K  +    + I V++   E    
Sbjct: 76  VKE------RKRPGPNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVLEA--EGGTR 127

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
            + +V AS AL  + +P +  +    V  ++   VL+    ED   Q  + L +      
Sbjct: 128 CLGIVGASLALADAEIPMKDLISACAVGKVDDHIVLDLSEQEDQTGQADMPLAIIPRTGE 187

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  ++++ N L+++   +A+   ++ C  + +   + 
Sbjct: 188 ITFLQMDGN-LTQEEFEEALDLAYDGCYYINQLQKEA 223


>gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672]
          Length = 238

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 23/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +RDI      ++   GS L   G+T+ I   T+     E     L GT  
Sbjct: 1   MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATI----SEGVPPFLKGTGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LPC+T   ++     G  + R     RL  R++   +  +     T+ I  
Sbjct: 57  GWLTSEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           ++ ++DG +  A++ G  LAL  A          G PI   VA +++G+V       I+ 
Sbjct: 117 DVIQADGGTRTASITGGFLALYIACQKLSEDLKIGNPIKSFVAAVSLGIVNGE----IML 172

Query: 478 DISGDEDHLGHMDFK-VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D   +A   S I  +Q   + G   ++++   +     G   +++   
Sbjct: 173 DLNYEEDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQK 232

Query: 537 KVLS 540
           +VL+
Sbjct: 233 RVLN 236



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 24/213 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  YGET V+        +     G     LT  Y                ++ + T
Sbjct: 26  GSVLIEYGETKVICNATISEGVPPFLKGTGTGWLTSEYSMLP-CSTHTRNQRESQKGKLT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR+I RS+R         E    +  +V+Q D        S+     AL ++  
Sbjct: 85  GRTQEISRLIGRSLRSAIDLSLIGERTITIDCDVIQADGG--TRTASITGGFLALYIACQ 142

Query: 142 --------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVEL 190
                   G P +  V    +  +NG+ +L+   +ED   +  ++L  +  +  ++ ++ 
Sbjct: 143 KLSEDLKIGNPIKSFVAAVSLGIVNGEIMLDLNYEEDSNAEADINLI-ANEKSEIIEIQG 201

Query: 191 EANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            + + +  +D++   I  G N    +I+   ++
Sbjct: 202 TSEKGTFDKDMLNKMIDLGLNGINQLIDIQKRV 234


>gi|270265234|ref|ZP_06193496.1| ribonuclease PH [Serratia odorifera 4Rx13]
 gi|270040868|gb|EFA13970.1| ribonuclease PH [Serratia odorifera 4Rx13]
          Length = 238

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNALVAAGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S + ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIETIFQAQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 22/230 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL-----E 123
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTAS 129

Query: 124 SSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
            S   V++  A  AL+ +G     P +G V    V  + G+ + +    ED   +  +++
Sbjct: 130 ISGACVALADALNALVAAGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSAAETDMNV 189

Query: 177 FVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +      ++ V+   E    S D +L  +       + + +A       
Sbjct: 190 VM-MEDGRMIEVQGTAEGEPFSHDELLALLALARGGIETIFQAQKAALAE 238


>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
 gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
          Length = 253

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 12/247 (4%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
                +R+DGR ++ +R +  +VG+L R  GS     G  + I  V  G RE   +   L
Sbjct: 11  FFKDGLRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAV-YGPREV--HPRHL 67

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
               R      YN    +  E  R G P RR     +++R A+ PV+  +      + + 
Sbjct: 68  QEVTRAIVRYRYNMASFSVEERKRPG-PDRRSYELSKVSREALEPVILTSFFPRSVIDVF 126

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            E+ ++D  +  A +  +++AL DAG+P+   ++  A G V D     I+ D   +ED+ 
Sbjct: 127 VEVLQADAGTRTAGINAAAVALADAGIPMKSMISSCAAGKVGDT----IVLDPMKEEDNF 182

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           G  D  +A T +G IT MQMD   G ++ +    A+  A +G   I     + L     Q
Sbjct: 183 GQADLPIAMTPNGDITLMQMD---GNLTPDEFGQAVTMAMKGAKDIYELQRRALVAKYSQ 239

Query: 546 LGEFTPR 552
           +   + R
Sbjct: 240 ISTDSAR 246



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 18/221 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           RP+K+E G +AR +DG+     G   V+A V   R +            +   Y   +++
Sbjct: 27  RPVKIEVGILAR-ADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIVRYRYNMASFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P      +S++   ++ P+       ++   V + V+Q D      
Sbjct: 86  VEE------RKRPGPDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVLQADAG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
              + AA+ AL  +G+P +  +       +    VL+P  +ED  G  DL ++ T +  +
Sbjct: 138 TAGINAAAVALADAGIPMKSMISSCAAGKVGDTIVLDPMKEEDNFGQADLPIAMTPNGDI 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            +      L+ D    A+       K + E   +   + AK
Sbjct: 198 TLMQMDGNLTPDEFGQAVTMAMKGAKDIYELQRR--ALVAK 236


>gi|262281423|ref|ZP_06059204.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
 gi|262257249|gb|EEY75986.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
          Length = 238

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R+ + +R++       +   GS L   G T+ +   ++    D      L G  +
Sbjct: 1   MRIDQRELDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASI----DNSVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +  G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+++AL+D              P+   VA I++G+ +D     +L
Sbjct: 117 DVIQADGGTRTAAITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  V  T +G    +Q   +    +       L+ A++G   ++ + 
Sbjct: 173 LDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELVKKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +G T VL T   D S+     G+    +T  Y     + 
Sbjct: 12  REVKI-TRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             +      R   + +     I R+I RS+R +    K  +N   +  +V+Q D      
Sbjct: 71  HSRCDREAAR--GKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  A+ AL+           +   P +G V    V     + +L+   +ED   Q  
Sbjct: 127 TAAITGAAVALVDAMNVLLSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           L++ ++   + + +    E    +       +         +++   + 
Sbjct: 187 LNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELVKKQQEA 235


>gi|229105117|ref|ZP_04235768.1| Ribonuclease PH [Bacillus cereus Rock3-28]
 gi|228678298|gb|EEL32524.1| Ribonuclease PH [Bacillus cereus Rock3-28]
          Length = 258

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGRGKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V +     ++
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVGEQG---VV 186

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 187 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQ 246

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 247 KEALGDIVSHIE 258



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 25  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 84  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 140

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 141 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVGEQGVVLDLNYAEDSKADVD 200

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 201 MNVIMTG-KGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEA 249


>gi|83746454|ref|ZP_00943505.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|207723807|ref|YP_002254205.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|207743767|ref|YP_002260159.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|300703571|ref|YP_003745173.1| RNAse ph (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
 gi|83726785|gb|EAP73912.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|206589012|emb|CAQ35974.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|206595166|emb|CAQ62093.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|299071234|emb|CBJ42552.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
          Length = 238

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDT  +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRSVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPK----VPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  RA+  V   +A   +TL +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  D            G PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAYDAVSVMRGKGLLTGEPIRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T + G   +Q   +    +   M   L  A +G   ++   
Sbjct: 173 LDLDYPEDSACDTDMNVVMTGNGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           R + L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     + 
Sbjct: 12  RSVTL-TRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A             L+G P    V    V  ++G  VL+    ED      +
Sbjct: 128 ASITGAFVAAYDAVSVMRGKGLLTGEPIRDFVAAVSVGVVDGVPVLDLDYPEDSACDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G    V +    E    +   +   +       + +I    + 
Sbjct: 188 NVVMTGNGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQA 235


>gi|312143229|ref|YP_003994675.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
 gi|311903880|gb|ADQ14321.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
          Length = 239

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+ + +RDI       +   GS L   GDT  +  V++    ++     L G   
Sbjct: 1   MRNDGRELDQLRDIQITRDFTKYAEGSVLVETGDTMVLCNVSI----EDSVPYFLRGQNT 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +   A  R    R     RL  R++  ++        T+ +  
Sbjct: 57  GWLTAEYSLLPRATQDRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D           +  P+   +A  ++G+V    +   +
Sbjct: 117 DVLQADGGTRTASITGAYVALVDAVNFLLAEGKLSENPLKDFMAATSVGIV----EGKAM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +A T++G I  +Q   +    +   M      A++G   ++   
Sbjct: 173 LDLCYEEDFRAQVDMNIAMTENGEIIEIQGTAEENPFTREEMNKLYDLAEKGIRELIEIQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 88/216 (40%), Gaps = 25/216 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV-GKIPGGYLRR 80
           + ++G+VL   G+T+VL  V  + S+     GQ+   LT  Y     A   +      +R
Sbjct: 22  KYAEGSVLVETGDTMVLCNVSIEDSVPYFLRGQNTGWLTAEYSLLPRATQDRNIREAAKR 81

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL 138
           +   +     I R+I RS+R +       E    V  +V+Q D        S+  A  AL
Sbjct: 82  KL--SGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDCDVLQADGG--TRTASITGAYVAL 137

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA-V 185
           +           LS  P +  +    V  + G+ +L+   +ED +  +D+ ++ T++  +
Sbjct: 138 VDAVNFLLAEGKLSENPLKDFMAATSVGIVEGKAMLDLCYEEDFRAQVDMNIAMTENGEI 197

Query: 186 LMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           + ++  A +   + + +           + +IE   
Sbjct: 198 IEIQGTAEENPFTREEMNKLYDLAEKGIRELIEIQK 233


>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
 gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
          Length = 245

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+   G   +  GS+L   GDT+ +   +      E     L G  + 
Sbjct: 6   RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFT----EGVPRWLKGEGKG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATG  S      G    R     RL  R++  ++   A    T+ +  +
Sbjct: 62  WVTAEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A++ G+ +AL D+               P+   V+ I++G++    D   
Sbjct: 122 VLQADGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGII----DGTP 177

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T SG    +Q   +      + +   L  A  G   +   
Sbjct: 178 MLDLPYTEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARI 237

Query: 535 MSKVLSE 541
             + L E
Sbjct: 238 QRESLEE 244



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 28/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  + Q++G+ L  +G+T VL T  +   +     G+    +T  Y     A 
Sbjct: 16  RPITITRGW-SNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTAEYAMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G         + +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 75  G-TRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQADGG--TRT 131

Query: 129 VSMVAASAALML-------------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  A  AL               S  P +  V    V  I+G  +L+    ED   + 
Sbjct: 132 ASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYTEDVRAET 191

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +++ V+G+    + V+  A       D +   +         +     +  + 
Sbjct: 192 DMNVVVTGS-GKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQRESLEE 244


>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
 gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
           str. Fusaro]
          Length = 501

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 112/236 (47%), Gaps = 12/236 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
             ++ D  +R+DGR ++ +R +  ++G+L R  GS     G  + +V V  G RE   + 
Sbjct: 6   EKLITDDGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGV-FGPREA--HP 62

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
                         YN    +T + +R G PSRR I   +++R A  PV+         +
Sbjct: 63  RRSQRADTAVIRYKYNMASFSTEDRARPG-PSRRSIEISKVSREAFEPVIMAELFPKTAI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  EI ++D  +  A +  SS+AL DAG+P+   V   A G V    D  I+ D++ +E
Sbjct: 122 DIFVEILQADAGTRTAAINASSIALADAGIPMKGLVTSCAFGKV----DGQIVLDLNKEE 177

Query: 484 DHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           D+ G  DF VA T  G IT +QMD   G ++ + +    +  K+G   IL     V
Sbjct: 178 DNYGEADFPVAMTQDGEITLLQMD---GNLTTDEIRKGFELVKKGCKEILEIQQAV 230



 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 20/227 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G ++R +DG+    +G   VL  V   R     +    D   +   Y   +++
Sbjct: 25  RPMKIEIGVLSR-ADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVIRYKYNMASFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
                    R    P+   I IS++   +  P+       K    + + ++Q D      
Sbjct: 84  TED------RARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQADAG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
             ++ A+S AL  +G+P +G V       ++GQ VL+   +ED  G  D  V+ TQD  +
Sbjct: 136 TAAINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNYGEADFPVAMTQDGEI 195

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
            +      L+ D     I  G    K   + I ++ +   +      
Sbjct: 196 TLLQMDGNLTTDE----IRKGFELVKKGCKEILEIQQAVLRTKFETP 238


>gi|329925260|ref|ZP_08280203.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
 gi|328940093|gb|EGG36426.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
          Length = 252

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 107/253 (42%), Gaps = 24/253 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR S+ +R ++    + +   GS     GDT+ ++  T+    DE+    L G  +
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATV----DEKVPPFLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G  S R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWVTAEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL             A  PI+  +A I++G+         L
Sbjct: 117 DVIQADGGTRTTSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIA----GGQAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T SG    +Q   +    S   +   L+  ++G   ++   
Sbjct: 173 LDLNYEEDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQ 232

Query: 536 SKVLSESRLQLGE 548
            + L     ++G 
Sbjct: 233 QEALGPIVAKIGS 245



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ L T  + + ++G+V    G+T VL T   D  +     GQ    +T  Y     A 
Sbjct: 12  RPMNLST-HVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +   + I R+I R++R + +     E  +    +V+Q D       
Sbjct: 71  QSRNQREANR-GKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL +           +  P    +    V    GQ +L+   +ED   +  +
Sbjct: 128 TSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIAGGQALLDLNYEEDSKAKVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++G+    + V+    +   S + +   +  G    + +IE   + 
Sbjct: 188 NLVMTGS-GKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEA 235


>gi|258592582|emb|CBE68891.1| RNase PH [NC10 bacterium 'Dutch sediment']
          Length = 258

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 28/255 (10%)

Query: 303 VRTVMLDKKV----RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +R +  D       R DGR  + +R +    G L+   GS L   G+T+ +   T+    
Sbjct: 1   MRRLAGDHAKGDLVRSDGRKIDEIRPVKVDRGYLRHAEGSLLIEVGETRVLCTATV---- 56

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLP 414
           +E+    L  T +      Y  LP AT   +      G  S R     RL  R++  V+ 
Sbjct: 57  EEKVPPFLRATGQGWVTAEYGMLPRATKTRTPRESATGRASGRTFEIQRLIGRSLRAVID 116

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIA 463
            T     T+ I  ++ ++DG +    + G+ +A+ D            G  +   VAGI+
Sbjct: 117 LTRLGERTVLIDCDVIQADGGTRTTAITGAFVAMADALSRLQENGQLKGPLLKDFVAGIS 176

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQ 522
           +G V    D  +L D++  ED +  +D  V  T       +Q   +     +  +   L 
Sbjct: 177 IGYV----DGELLLDLNYAEDSMADVDMNVVMTGARKFVEVQGTAEEVPYDKAQLDRMLD 232

Query: 523 QAKRGRLHILNEMSK 537
            A RG   +++   +
Sbjct: 233 LATRGIDQLVDLQRQ 247



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K++ G + R ++G++L   GET VL T   +  +           +T  Y     A 
Sbjct: 25  RPVKVDRGYL-RHAEGSLLIEVGETRVLCTATVEEKVPPFLRATGQGWVTAEYGMLPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            K          R +     I R+I RS+R +       E    +  +V+Q D       
Sbjct: 84  -KTRTPRESATGRASGRTFEIQRLIGRSLRAVIDLTRLGERTVLIDCDVIQADGG--TRT 140

Query: 129 VSMVAASAAL--MLSGL----PFEGP-----VVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  A+   LS L      +GP     V G  + Y++G+ +L+    ED      +
Sbjct: 141 TAITGAFVAMADALSRLQENGQLKGPLLKDFVAGISIGYVDGELLLDLNYAEDSMADVDM 200

Query: 175 DLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G +  V  V+  A ++  D   +   +         +++   +L
Sbjct: 201 NVVMTGARKFV-EVQGTAEEVPYDKAQLDRMLDLATRGIDQLVDLQRQL 248


>gi|312877642|ref|ZP_07737599.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795589|gb|EFR11961.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
          Length = 258

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 25/257 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S       L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQ 232

Query: 536 SKVLSESRLQLGEFTPR 552
            +VL E   +L    P+
Sbjct: 233 KEVLGE-DCELVGSVPK 248



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       +I  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGICDGVEMLDLCFEEDSKAAVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++   + + +    E    S +     +  G    + +IE   ++
Sbjct: 188 NLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEV 235


>gi|261405343|ref|YP_003241584.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
 gi|261281806|gb|ACX63777.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
          Length = 252

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR S+ +R ++    + +   GS     GDT+ ++  T+    DE+    L G  +
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATV----DEKVPPFLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G  S R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWVTAEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL             A  PI+  +A I++G+         L
Sbjct: 117 DVIQADGGTRTTSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIA----GGQAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T SG    +Q   +    S   +   L+  ++G   ++   
Sbjct: 173 LDLNYEEDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ L T  + + ++G+V    G+T VL T   D  +     GQ    +T  Y     A 
Sbjct: 12  RPMNLST-HVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +   + I R+I R++R + +     E  +    +V+Q D       
Sbjct: 71  QSRNQREANR-GKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL +           +  P    +    V    GQ +L+   +ED   +  +
Sbjct: 128 TSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIAGGQALLDLNYEEDSKAKVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++G+    + V+    +   S + +   +  G    + +IE   + 
Sbjct: 188 NLVMTGS-GKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEA 235


>gi|257085617|ref|ZP_05579978.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
 gi|256993647|gb|EEU80949.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
          Length = 451

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 131/358 (36%), Gaps = 46/358 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +      +   
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQ 234

Query: 533 NEMSKV-LSESRLQLGEFTPRVEIMAIPPDQIRN---VIGMGGKVIRGIVEQTGAKVNID 588
            E      SE           + I    P + +    + G  G  ++ +++      +++
Sbjct: 235 KEALYALASEEVPSQDLEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-DVE 293

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           + G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 294 ETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           +++ ++ + + V  ++    + +   D +   + +G    + +I    +   + A     
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKE--ALYALASEE 245

Query: 232 IDSKDFSK 239
           + S+D  +
Sbjct: 246 VPSQDLEE 253


>gi|227518377|ref|ZP_03948426.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
 gi|227074055|gb|EEI12018.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
          Length = 451

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
 gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
          Length = 242

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +     +  +
Sbjct: 8   TGFRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQV-NS 65

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                   Y     +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 66  NEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED  G  
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTP----LLDLNYLEDSAGGS 181

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNE 534
           D  V        +T +QMD K+   +   +M +A++  K    +I   
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIASYIREV 229



 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 15/216 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++       +   +   Y+   +
Sbjct: 21  RQLKGEVGIVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALVRCEYRMAEF 79

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G       RR+ +       IS +I +++           +Q+ I V     +     
Sbjct: 80  STGD-----RRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADGGTRS 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS--GTQDAV 185
             + AA+ AL  +G+P    V      Y+    +L+    ++  G  D+ V      D V
Sbjct: 135 ACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAKMDKV 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++++A  L  D   + +      CK +   I ++
Sbjct: 195 TLLQMDAK-LPMDTFENVMGLAIEGCKAIASYIREV 229


>gi|261867317|ref|YP_003255239.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412649|gb|ACX82020.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 238

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +   R I       +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASV----EESVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           A  P+   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALCDALNSLVTNGTLAKNPLKGLVAAISVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGKPFSHEELLTLLDLAKQGCDMIFQTQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 RATLAE 238



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T VL T   + S+     GQ    +T  Y     + 
Sbjct: 12  RPIQI-TRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            L+  P +G V    V  +NG+ V +    ED   +
Sbjct: 125 TRTASITGACVALCDALNSLVTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             +++ +      ++ V+   E    S + +L  +      C  + +        
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGKPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238


>gi|209547618|ref|YP_002279535.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226736929|sp|B5ZMW8|RNPH_RHILW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209533374|gb|ACI53309.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 92/246 (37%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +    +   GS L   GDT  +   +L    +E+    L  + +
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D    +           +   VA I+ G+         
Sbjct: 117 DVIQADGGTRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGVFASQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE      +  AK G   ++  
Sbjct: 173 VIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTSLMGLAKNGIGELVAL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     A 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+     AL                   +  V          Q V++    ED   
Sbjct: 125 TRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGVFASQPVIDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G    ++ ++   E    SE+     +    N    ++    +   
Sbjct: 185 ETDANFVMTG-AGGIVEIQGTAEGTPFSEEEFTSLMGLAKNGIGELVALQKQAIA 238


>gi|146337341|ref|YP_001202389.1| ribonuclease PH [Bradyrhizobium sp. ORS278]
 gi|166228267|sp|A4YJR3|RNPH_BRASO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146190147|emb|CAL74139.1| RNase PH [Bradyrhizobium sp. ORS278]
          Length = 237

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 26/245 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+++   GS L   GDT  +V  TL    +++    L G  R
Sbjct: 1   MRPSRRAPDEMRAVSLERGVVKYAEGSCLVKFGDTHVLVTATL----EDRLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +R     G  + R +   RL  R++   +   A     + +  
Sbjct: 57  GWITAEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISK-----------PVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D    +              VA ++ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAWVALADCIRWMKARNMIKTEVLRTNVAAVSCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIM--VMALQQAKRGRLHILN 533
            D+   ED     D     T  G I  +Q   +    SE     +MAL +   GRL  L 
Sbjct: 173 LDLDYAEDSEAETDANFVMTGDGRIIEVQGTAEKTPFSEAEFLALMALARKGVGRLVDLQ 232

Query: 534 EMSKV 538
           +M+  
Sbjct: 233 KMAVA 237



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12  RAVSLERGVV-KYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +      RRE    + T   + I R+I RS+R         E Q+    +V+Q D    
Sbjct: 71  LER----TRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLSGLPFEGP------------VVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL    + +               V        NG  VL+    ED   
Sbjct: 125 TRTASITGAWVALADC-IRWMKARNMIKTEVLRTNVAAVSCGIYNGTPVLDLDYAEDSEA 183

Query: 171 QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G    ++ V+  A +   SE   L  +         +++       
Sbjct: 184 ETDANFVMTG-DGRIIEVQGTAEKTPFSEAEFLALMALARKGVGRLVDLQKMAVA 237


>gi|260431972|ref|ZP_05785943.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415800|gb|EEX09059.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
          Length = 237

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKIGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVITDPLVDPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    S   M   ++ A++G   ++   
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRAQMDQLMELAEKGVSELVAAQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAATA 237



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 82/233 (35%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RPVSIETG-FTKHAEGSCLIKIGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 125 TRCASITGGWVALRLAVNKLMKAGDVITDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G+   + + +  E +  S   +   +         ++ A      
Sbjct: 185 VDGNFIMTGSGKLIEVQMSAEGSVFSRAQMDQLMELAEKGVSELVAAQKAATA 237


>gi|315635018|ref|ZP_07890299.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315476280|gb|EFU67031.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 238

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +   R I       +   GS L   GDT+ +   T+    ++     L G  +
Sbjct: 1   MRPNQRANHQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATV----EDGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           +  P+   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALCDALNGLVANGTLSKNPLKGLVAAISVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCEVIFQTQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 RAALAE 238



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGDTKVLCTATVEDGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCVTLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            LS  P +G V    V  +NG+ V +    ED   +
Sbjct: 125 TRTASITGACVALCDALNGLVANGTLSKNPLKGLVAAISVGIVNGEAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             +++ +      ++ V+   E    S + +L  +      C+ + +        
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCEVIFQTQRAALAE 238


>gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
 gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
          Length = 245

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 24/252 (9%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +  +   R  GR ++ +R I       +   GS L   G T+ I   ++    +E+    
Sbjct: 1   MTEETWSRPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASV----EEKVPGW 56

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           L    +      Y  LP ATG  +      G  S R     RL  R++  V+   A    
Sbjct: 57  LKDQGKGWVTAEYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGER 116

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDG 470
            ++I  ++T++DG +  A++ G+ +AL D              P+   VA +++G+    
Sbjct: 117 MIKIDCDVTQADGGTRCASITGAYVALADAVNWLIKNGSLEKSPLKGQVAALSVGIY--- 173

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            + + ++D   DEDHL   D  V  TD+G    +Q   +    S   +   L+ A+ G  
Sbjct: 174 -EGVPVADFDYDEDHLSDTDMNVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLK 232

Query: 530 HILNEMSKVLSE 541
            +       L+E
Sbjct: 233 QLFAAQRAALAE 244



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G T V+ T   +  +      Q    +T  Y     A 
Sbjct: 18  RPIKI-TRHYTKYAEGSVLIEVGGTKVICTASVEEKVPGWLKDQGKGWVTAEYGMLPRAT 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
           G         + + +     I R+I RS+R +       E   ++  +V Q D       
Sbjct: 77  G-TRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCDVTQADGG--TRC 133

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S+  A  AL            L   P +G V    V    G  V +   DED     D+
Sbjct: 134 ASITGAYVALADAVNWLIKNGSLEKSPLKGQVAALSVGIYEGVPVADFDYDEDHLSDTDM 193

Query: 177 FVSGTQ-DAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            V  T     + ++   E    S + +   +    +  K +  A       
Sbjct: 194 NVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLKQLFAAQRAALAE 244


>gi|254252975|ref|ZP_04946293.1| RNase PH [Burkholderia dolosa AUO158]
 gi|124895584|gb|EAY69464.1| RNase PH [Burkholderia dolosa AUO158]
          Length = 246

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 96/248 (38%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M     R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  D L
Sbjct: 1   MTSTFSRPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPDFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + I  ++T++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 IHIDCDVTQADGGTRTASITGAFVAAHDAVSTLIAAGKLVRSPITDHVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           + + + D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 173 EGVPVLDLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGR 232

Query: 531 ILNEMSKV 538
           ++     V
Sbjct: 233 LVQLQKDV 240



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 21/214 (9%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V +R     +D     LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVAERVPDFLRDRGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVTQADGGTRTASITGAFVAAHD 144

Query: 133 AASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV- 185
           A S  +    L   P    V    V    G  VL+    ED      +++ ++G    V 
Sbjct: 145 AVSTLIAAGKLVRSPITDHVAAISVGVYEGVPVLDLDYAEDSRCDTDMNVVMTGAGGFVE 204

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +    E    S   +   +    +    +++   
Sbjct: 205 VQGTAEGAPFSRAEMNALLDLAQSGIGRLVQLQK 238


>gi|223365844|pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus
           Anthracis At 1.7 A Resolution
          Length = 255

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 11  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 66

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 67  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 127 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 183

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 184 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQ 243

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 244 KEALGDIVSHIE 255



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 22  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 80

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 81  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 137

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 138 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 197

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 198 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEA 246


>gi|210621777|ref|ZP_03292806.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
 gi|210154541|gb|EEA85547.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
          Length = 449

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+  R ++ +R +       +   GS L   G+T+ I   T+    +++    L  T   
Sbjct: 3   RLGNRANDEIRPVKITTNFTKYAAGSVLIEMGETKVICTATV----EDKVPPFLRNTGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T +        G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPSSTQQRKIRDSVRGKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +A                +PI   V+ I+ G++ D      + 
Sbjct: 119 VIQADGGTRTASITGGFVAAAQAIYGLYQNKEIKKLPIKNFVSAISAGVLNDEH----IL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D     TD G    +Q   +    S   +   L+  ++G   ++    
Sbjct: 175 DLCYEEDSAAKVDMNFVMTDKGEFVEVQGTGEEAPFSREDLNKLLELGEKGNKELIKIQR 234

Query: 537 KVLSE 541
             + E
Sbjct: 235 AAIPE 239



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 22/232 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + + G+VL   GET V+ T   +  +           +   Y     + 
Sbjct: 13  RPVKITTN-FTKYAAGSVLIEMGETKVICTATVEDKVPPFLRNTGTGWINAEYSMLPSST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I R+IR +       E    V  +V+Q D  +    
Sbjct: 72  QQRKIRDSVR-GKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCDVIQADGGTRTAS 130

Query: 129 VSMVAASAALMLSG---------LPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
           ++    +AA  + G         LP +  V       +N +++L+   +ED      ++ 
Sbjct: 131 ITGGFVAAAQAIYGLYQNKEIKKLPIKNFVSAISAGVLNDEHILDLCYEEDSAAKVDMNF 190

Query: 177 FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            ++  +   + V+    +   S + +   +  G    K +I+          
Sbjct: 191 VMT-DKGEFVEVQGTGEEAPFSREDLNKLLELGEKGNKELIKIQRAAIPEIG 241


>gi|82779134|ref|YP_405483.1| ribonuclease PH [Shigella dysenteriae Sd197]
 gi|309784379|ref|ZP_07679018.1| ribonuclease PH [Shigella dysenteriae 1617]
 gi|123561122|sp|Q329L3|RNPH_SHIDS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81243282|gb|ABB63992.1| RNase PH [Shigella dysenteriae Sd197]
 gi|308927886|gb|EFP73354.1| ribonuclease PH [Shigella dysenteriae 1617]
          Length = 238

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACMALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACMALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|293390938|ref|ZP_06635272.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951472|gb|EFE01591.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 238

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +   R I       +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASV----EESVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           A  P+   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALCDALNSLVTNGTLAKNPLKGLVAAISVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDMIFQTQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 RATLAE 238



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T VL T   + S+     GQ    +T  Y     + 
Sbjct: 12  RPIQI-TRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            L+  P +G V    V  +NG+ V +    ED   +
Sbjct: 125 TRTASITGACVALCDALNSLVTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             +++ +      ++ V+   E    S + +L  +      C  + +        
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238


>gi|229032136|ref|ZP_04188113.1| Ribonuclease PH [Bacillus cereus AH1271]
 gi|228729192|gb|EEL80191.1| Ribonuclease PH [Bacillus cereus AH1271]
          Length = 245

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVQEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVQEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEA 236


>gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5]
 gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Aquifex Aeolicus
 gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5]
          Length = 255

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +      G    R     R+  RA+   +  T     T+ +  
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A+ DA +           PI   VA +++G+V D     IL
Sbjct: 117 DVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVND----RIL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V GT SG ++ +    +    +++ ++  L  A++G   ++   
Sbjct: 173 LDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQ 232

Query: 536 SKVL 539
            K+ 
Sbjct: 233 KKLY 236



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 23/213 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+ L ++G+T V+ T     ++ +   G+    +T  Y     A  +        + R  
Sbjct: 26  GSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRAT-QQRTIRESVQGRIG 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                I RMI R++R         E    V  +V+Q D        ++  A  A+  + +
Sbjct: 85  GRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGG--TRTAAITGAFVAVADAII 142

Query: 144 -----------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA---VLMV 188
                      P +  V    V  +N + +L+   +ED    +D+ V GT       +  
Sbjct: 143 KLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHT 202

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             E    ++D ++  +         +IE   KL
Sbjct: 203 MGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|215488923|ref|YP_002331354.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|254808587|sp|B7UM50|RNPH_ECO27 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|215266995|emb|CAS11440.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|323965909|gb|EGB61357.1| ribonuclease PH [Escherichia coli M863]
 gi|323975137|gb|EGB70242.1| ribonuclease PH [Escherichia coli TW10509]
 gi|327250769|gb|EGE62471.1| ribonuclease PH [Escherichia coli STEC_7v]
          Length = 238

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
 gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
          Length = 237

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R +S          GS L   G+T+ +   T+ +         + G  +
Sbjct: 1   MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATVESG----VPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A    T+ I  
Sbjct: 57  GWINAEYGMLPRSTHTRNAREASRGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   +A I++G+         +
Sbjct: 117 DVIQADGGTRTASISGACVALVDALTHMRAKGMINSNPLKHMIAAISVGIY----KGQAI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S + +   L  AK     I++  
Sbjct: 173 SDLEYIEDSAAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 25/218 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL T   +  +     GQ    +   Y     +             +
Sbjct: 24  AEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWINAEYGMLPRST-HTRNAREASRGK 82

Query: 84  PTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAAL--- 138
                + I R+I R++R     K    N   +  +V+Q D        S+  A  AL   
Sbjct: 83  QGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQADGG--TRTASISGACVALVDA 140

Query: 139 --------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                   M++  P +  +    V    GQ + +    ED   +  +++ ++ T   ++ 
Sbjct: 141 LTHMRAKGMINSNPLKHMIAAISVGIYKGQAISDLEYIEDSAAETDMNVILTET-GKIIE 199

Query: 188 VEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V+   E    S D + + +    +  + +I+   +   
Sbjct: 200 VQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|170766572|ref|ZP_02901025.1| ribonuclease PH [Escherichia albertii TW07627]
 gi|170124010|gb|EDS92941.1| ribonuclease PH [Escherichia albertii TW07627]
          Length = 238

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|228941669|ref|ZP_04104216.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974596|ref|ZP_04135162.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981191|ref|ZP_04141491.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228778391|gb|EEM26658.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228784999|gb|EEM33012.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817881|gb|EEM63959.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942277|gb|AEA18173.1| ribonuclease PH [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 245

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDIQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDIQKEA 236


>gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|166228304|sp|A4VGR8|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166]
          Length = 240

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I   ++ T         L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETG----VPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL I  
Sbjct: 58  GWLTAEYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +A++D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVAVIDALKVLKKRGGLKGGDPVKQMIAAVSVGIYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  TD  G   +Q   +      + +   L  A  G   +   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGVRQLFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 23/231 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T            GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTASIETGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R     SK  +N   +  +V+Q D  +    
Sbjct: 72  GERNQREAAR-GKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDVIQADGGTRTAS 130

Query: 129 V--SMVAASAALML--------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLD 175
           +  +MVA   AL +         G P +  +    V    G+ VL+    ED   +  L+
Sbjct: 131 ITGAMVAVIDALKVLKKRGGLKGGDPVKQMIAAVSVGIYQGEPVLDLDYLEDSAAETDLN 190

Query: 176 LFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + ++      + V+  A       D +   +   H+  + + E        
Sbjct: 191 VVMT-DAGGFIEVQGTAEGAPFHADELNAMLALAHDGVRQLFELQRAALAD 240


>gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226736945|sp|B2V890|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 257

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I           GS L   G+T+ IV  ++    +++    L GT +
Sbjct: 1   MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVTASV----EDKVPPFLKGTGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P A+   S      G+PS R     RL  R++   +        T+ I  
Sbjct: 57  GWITAEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG + +A++ G+ +A+ DA +           P+   VA I++G V++     I+
Sbjct: 117 DVIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISVGKVRNE----IV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T  G    +    +    S+      L+  K G   ++   
Sbjct: 173 LDLNYTEDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQ 232

Query: 536 SKVLSESR 543
            + +    
Sbjct: 233 KEFIEGIP 240



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 23/217 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T V+ T   +  +     G     +T  Y     A        + R   
Sbjct: 24  AEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWITAEYSMIPRASETRSLREVVR-GS 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           P+     I R+I RS+R         E    +  +V+Q D      V S+  A  A+  +
Sbjct: 83  PSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQADGG--TRVASITGAFIAVADA 140

Query: 142 GL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
            +           P +  V    V  +  + VL+    ED   Q  ++L ++G  + V +
Sbjct: 141 CIKLTKQNLVKANPLKDYVAAISVGKVRNEIVLDLNYTEDSNAQVDMNLVMTGKGEFVEI 200

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
               E N  S++     + +G +  + +I+   +  +
Sbjct: 201 GATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIE 237


>gi|319441882|ref|ZP_07991038.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
          Length = 256

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 94/252 (37%), Gaps = 24/252 (9%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +      R DGR  + +R +    G      GS L   G+T+ +   ++     E     
Sbjct: 1   MTSSDYTRFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASV----SEGVPRF 56

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
              +        Y  LP AT E        G    R     RL  R++   +   A    
Sbjct: 57  KRDSGEGWLTAEYAMLPSATAERMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGEN 116

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDG 470
           T+ I  ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G++   
Sbjct: 117 TVNIDCDVLQADGGTRTASITGAYVALADALAVLQQRGVVPGEPLLDPVAAVSVGVI--- 173

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            D +   D+   ED    +D  V  T  G    +Q   +    S + +   L  A+ G  
Sbjct: 174 -DGVPCLDLPYPEDSRADVDMNVVMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLY 232

Query: 530 HILNEMSKVLSE 541
            +++     L  
Sbjct: 233 DLVDLQRAALDA 244



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 30/228 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           RP+++  G       G+VL  +G T V+ T  V +   +  +D     LT  Y     A 
Sbjct: 18  RPVRITRG-FTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGWLTAEYAMLPSAT 76

Query: 71  G-KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK----NETQVIINVMQHDLESS 125
             ++P   L+   +       ISR+I RS+R       +    N   +  +V+Q D    
Sbjct: 77  AERMPREALK--GKVKGRTHEISRLIGRSLRAAV--DLRALGENTVNIDCDVLQADGG-- 130

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGS 173
               S+  A  AL  +           G P   PV    V  I+G   L+ P  ++ +  
Sbjct: 131 TRTASITGAYVALADALAVLQQRGVVPGEPLLDPVAAVSVGVIDGVPCLDLPYPEDSRAD 190

Query: 174 LDLFVSGTQDA-VLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAI 218
           +D+ V  T +   + ++      + S   + + +         +++  
Sbjct: 191 VDMNVVMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLYDLVDLQ 238


>gi|325579215|ref|ZP_08149171.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159450|gb|EGC71584.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 238

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASV----DESVPRFLKGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   VA I++G+V    +   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIANGTLKTNPIKGLVAAISVGIV----EGEAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   D S+     GQ+   +T  Y     + 
Sbjct: 12  RPIKI-TRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++GL         P +G V    V  + G+ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINGLIANGTLKTNPIKGLVAAISVGIVEGEAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C+ +  A  + 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREA 235


>gi|302871436|ref|YP_003840072.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
 gi|302574295|gb|ADL42086.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
          Length = 258

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 25/257 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S       L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQ 232

Query: 536 SKVLSESRLQLGEFTPR 552
            +VL +   +L    P+
Sbjct: 233 KEVLGQ-DCELVGSVPK 248



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       +I  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGICDGVEMLDLCFEEDSKAAVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++   + + +    E    S +     +  G    + +IE   ++
Sbjct: 188 NLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEV 235


>gi|309388890|gb|ADO76770.1| RNAse PH [Halanaerobium praevalens DSM 2228]
          Length = 239

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R+I       +   GS L   GDT  +  V++    ++     L G  +
Sbjct: 1   MRTDGREYNQLREIEITRNYTKYAEGSVLIETGDTMVLCNVSI----EDSVPYFLRGQNK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +   A  R    R     RL  R++  ++        T+ +  
Sbjct: 57  GWLTAEYSLLPRATQSRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A  ++GLVK       L
Sbjct: 117 DVLQADGGTRTAAITGAFVALVDGINFLLAEGKIEENPLKGYMAATSVGLVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +  T++G I  +Q   +    S   +    + A++G L ++ E 
Sbjct: 173 LDLCYEEDSQAQVDMNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEEQ 232

Query: 536 SKV 538
             V
Sbjct: 233 KLV 235



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL   G+T+VL  V  + S+     GQ+   LT  Y     A 
Sbjct: 12  REIEI-TRNYTKYAEGSVLIETGDTMVLCNVSIEDSVPYFLRGQNKGWLTAEYSLLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             +      +R+   +     I R+I RS+R +    K  +    V  +V+Q D      
Sbjct: 71  QSRNIREAAKRKL--SGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDCDVLQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175
             ++  A  AL+           +   P +G +    V  + G+ +L+   +ED Q  +D
Sbjct: 127 TAAITGAFVALVDGINFLLAEGKIEENPLKGYMAATSVGLVKGEALLDLCYEEDSQAQVD 186

Query: 176 LFVSGTQ-DAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           + +  T+   ++ ++  A +   S + +             +IE   
Sbjct: 187 MNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEEQK 233


>gi|258544503|ref|ZP_05704737.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
 gi|258520238|gb|EEV89097.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
          Length = 238

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+ +   GS+L   GDT  +   ++    +E+    L G  +
Sbjct: 1   MRASNRRPDQLRPVSIERGVNKYAEGSALIRCGDTHVLCTASV----EEKVPPFLRGKNQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E     S  G    R +   RL  R++  V+  TA     + I  
Sbjct: 57  GWVTAEYGMLPRATHERTVRESARGKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL D              P+   +A +++G+         L
Sbjct: 117 DVLQADGGTRTAAISGGFVALADAIRTLIQQGRLKQNPLHGQLAAVSVGVY----RGTPL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +   D G    +Q   +        M   L  A +G   I+   
Sbjct: 173 LDLEYAEDSEAETDMNIVMNDGGAFIEIQGTAEGHAFRHEEMQAMLALADKGIREIMQVQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +E G + + ++G+ L   G+T VL T   +  +     G++   +T  Y     A 
Sbjct: 12  RPVSIERG-VNKYAEGSALIRCGDTHVLCTASVEEKVPPFLRGKNQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +     + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 71  HERTVRESAR-GKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++     AL            L   P  G +    V    G  +L+    ED   +  +
Sbjct: 128 AAISGGFVALADAIRTLIQQGRLKQNPLHGQLAAVSVGVYRGTPLLDLEYAEDSEAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++    A + ++   E +    + +   +       + +++   + 
Sbjct: 188 NIVMN-DGGAFIEIQGTAEGHAFRHEEMQAMLALADKGIREIMQVQKQA 235


>gi|116250149|ref|YP_765987.1| ribonuclease PH [Rhizobium leguminosarum bv. viciae 3841]
 gi|166228307|sp|Q1MMD1|RNPH_RHIL3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115254797|emb|CAK05871.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +    +   GS L   GDT  +   +L    +E+    L  T +
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D    +           +   VA I+ G+         
Sbjct: 117 DVIQADGGTRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGIFASQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE      +Q A+ G   ++  
Sbjct: 173 VIDLDYLEDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVAL 232

Query: 535 MSKVLS 540
             + + 
Sbjct: 233 QKQAVE 238



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     A 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+     AL                   +  V          Q V++    ED   
Sbjct: 125 TRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGIFASQPVIDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++GT   ++ ++   E    SE      +    N    ++    +  +
Sbjct: 185 ETDANFVMTGT-GGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVE 238


>gi|30248295|ref|NP_840365.1| 3' exoribonuclease [Nitrosomonas europaea ATCC 19718]
 gi|61216039|sp|Q82XJ4|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718]
          Length = 241

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R + R    +R +      ++   GS L   G+T+ I   ++     E+    L G  +
Sbjct: 2   PRCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASV----IEKVPPFLKGAGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  +     G  S R +   RL  RA+  +L        T+++  
Sbjct: 58  GWLTAEYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           +  PI   VA +++G++K       L
Sbjct: 118 DVIQADGGTRTASITGAFVALYDAIDYLRAERMISQNPIRDHVAAVSVGILKGQP----L 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G+  +Q   +    S   + + L  A++G   + +  
Sbjct: 174 LDLDYLEDSGCDTDLNVVMTGSLGLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQ 233

Query: 536 SKV 538
            K 
Sbjct: 234 RKA 236



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 32/237 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++      R ++G+VL  YGET V+ T      +     G     LT  Y     + 
Sbjct: 13  RPVRI-IRHYVRHAEGSVLIEYGETRVICTASVIEKVPPFLKGAGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
           G+     ++RE    + +   + I R+I R++R +    K  +   Q+  +V+Q D    
Sbjct: 72  GER----MQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQADGG-- 125

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+  A  AL            +S  P    V    V  + GQ +L+    ED G  
Sbjct: 126 TRTASITGAFVALYDAIDYLRAERMISQNPIRDHVAAVSVGILKGQPLLDLDYLEDSGCD 185

Query: 173 -SLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             L++ ++G+   ++ V+  A ++  S   +   +       + + +   K  +  A
Sbjct: 186 TDLNVVMTGSL-GLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQRKALETVA 241


>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
 gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
          Length = 246

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 10/231 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGRD + +R I  + G+L+R  GS     G  + IV    G RE   +   L   
Sbjct: 11  DGKRLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNK-IVAAVYGPREV--HPRHLQDP 67

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R      YN  P +  E  + G P RR I   +++R A+ PV+ +       + I  E+
Sbjct: 68  SRAIIRYRYNMAPFSVEERKKPG-PDRRSIEISKVSREALEPVILKELFPRSGIDIFVEV 126

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++D  +  A +  +S+AL+DAGV +   +  +A+  V    +  I+ D   +ED+ G  
Sbjct: 127 LQADAGTRTACLNAASVALIDAGVAMRGMITAVAVAKV----EGEIVLDPMKEEDNYGEA 182

Query: 490 DFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           D   A    +  I ++ +    G +S   M  AL+ AK+G + I N   + 
Sbjct: 183 DVPFAFLIRNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREA 233



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 102/233 (43%), Gaps = 23/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + R++DG+     G+  ++A V   R +       P    +   Y    ++
Sbjct: 24  RPIKIEAGVL-RRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAIIRYRYNMAPFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R++  P    I IS++   ++ P+  K    ++   + + V+Q D      
Sbjct: 83  VEE------RKKPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQADAG--TR 134

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS-----GT 181
              + AAS AL+ +G+   G +    V  + G+ VL+P  +ED  G  D+  +     G 
Sbjct: 135 TACLNAASVALIDAGVAMRGMITAVAVAKVEGEIVLDPMKEEDNYGEADVPFAFLIRNGK 194

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPIVID 233
            +++ +++++   +S + +  A+         +     + + +  ++E   ++
Sbjct: 195 IESIALLQMDGK-MSAEEMKKALELAKKGAMQIYNIQREAIMRKYSREEEEVE 246


>gi|26991970|ref|NP_747395.1| ribonuclease PH [Pseudomonas putida KT2440]
 gi|148550402|ref|YP_001270504.1| ribonuclease PH [Pseudomonas putida F1]
 gi|61216052|sp|Q88C89|RNPH_PSEPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228303|sp|A5WB10|RNPH_PSEP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24987100|gb|AAN70859.1|AE016730_5 ribonuclease PH [Pseudomonas putida KT2440]
 gi|148514460|gb|ABQ81320.1| RNAse PH [Pseudomonas putida F1]
          Length = 240

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+   +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGE----A 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +            L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QQAALAD 240



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ +    + V+  A       +     +         + E        
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240


>gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 240

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVLKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   +   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALADALKVLKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L++ ++ +    + V+  A       + +   +         + E  
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQ 234


>gi|229117982|ref|ZP_04247342.1| Ribonuclease PH [Bacillus cereus Rock1-3]
 gi|228665431|gb|EEL20913.1| Ribonuclease PH [Bacillus cereus Rock1-3]
          Length = 245

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEA 236


>gi|146296019|ref|YP_001179790.1| ribonuclease PH [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166228275|sp|A4XI64|RNPH_CALS8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145409595|gb|ABP66599.1| RNAse PH [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 258

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ I+  T+    D++      G+  
Sbjct: 1   MRQDQRSYNELRPIKITRNFIKYAEGSCLIEMGNTKVIITATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + +  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIILDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDDKVIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   + G  ++      L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKASVDMNLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQ 232

Query: 536 SKVLSE 541
            +VL E
Sbjct: 233 REVLGE 238



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIITATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       ++  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIILDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDDKVIENFPITDFVAAVSVGICDGVEMLDLCFEEDSKASVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +L ++   + + +    E    +++     +  G    + +IE   ++    +K
Sbjct: 188 NLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQREVLGEDSK 241


>gi|229098953|ref|ZP_04229888.1| Ribonuclease PH [Bacillus cereus Rock3-29]
 gi|228684451|gb|EEL38394.1| Ribonuclease PH [Bacillus cereus Rock3-29]
          Length = 258

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 186

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 187 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQ 246

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 247 KEALGDIVSHIE 258



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 25  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 84  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 140

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 141 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 200

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 201 MNVIMTG-KGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEA 249


>gi|75760745|ref|ZP_00740767.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218899648|ref|YP_002448059.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228903010|ref|ZP_04067149.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
 gi|228967584|ref|ZP_04128608.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|226736885|sp|B7IIZ1|RNPH_BACC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|74491773|gb|EAO54967.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218545068|gb|ACK97462.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228792108|gb|EEM39686.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856603|gb|EEN01124.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
          Length = 245

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDMQKEA 236


>gi|30065081|ref|NP_839252.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|56480393|ref|NP_709422.2| ribonuclease PH [Shigella flexneri 2a str. 301]
 gi|110807680|ref|YP_691200.1| ribonuclease PH [Shigella flexneri 5 str. 8401]
 gi|157163124|ref|YP_001460442.1| ribonuclease PH [Escherichia coli HS]
 gi|170018127|ref|YP_001723081.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194435850|ref|ZP_03067953.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253771516|ref|YP_003034347.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163571|ref|YP_003046679.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|260857962|ref|YP_003231853.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|260870373|ref|YP_003236775.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|297518127|ref|ZP_06936513.1| ribonuclease PH [Escherichia coli OP50]
 gi|300907685|ref|ZP_07125313.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300923429|ref|ZP_07139469.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300927927|ref|ZP_07143486.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|301303877|ref|ZP_07209996.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|301325325|ref|ZP_07218832.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|312972072|ref|ZP_07786246.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|61216048|sp|Q83PN2|RNPH_SHIFL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123047760|sp|Q0SYH0|RNPH_SHIF8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991084|sp|A8A6A5|RNPH_ECOHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043762|sp|B1IYV7|RNPH_ECOLC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30043342|gb|AAP19063.1| RNase PH [Shigella flexneri 2a str. 2457T]
 gi|56383944|gb|AAN45129.2| RNase PH [Shigella flexneri 2a str. 301]
 gi|110617228|gb|ABF05895.1| RNase PH [Shigella flexneri 5 str. 8401]
 gi|157068804|gb|ABV08059.1| ribonuclease PH [Escherichia coli HS]
 gi|169753055|gb|ACA75754.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194425393|gb|EDX41377.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253322560|gb|ACT27162.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975472|gb|ACT41143.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|253979628|gb|ACT45298.1| ribonuclease PH [Escherichia coli BL21(DE3)]
 gi|257756611|dbj|BAI28113.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|257766729|dbj|BAI38224.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|281603006|gb|ADA75990.1| Ribonuclease PH [Shigella flexneri 2002017]
 gi|300400621|gb|EFJ84159.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300420256|gb|EFK03567.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300464019|gb|EFK27512.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|300840840|gb|EFK68600.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|300847852|gb|EFK75612.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|309704045|emb|CBJ03391.1| ribonuclease PH [Escherichia coli ETEC H10407]
 gi|310334449|gb|EFQ00654.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|313647483|gb|EFS11933.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|313848787|emb|CAQ33969.2| rph [Escherichia coli BL21(DE3)]
 gi|315254030|gb|EFU33998.1| ribonuclease PH [Escherichia coli MS 85-1]
 gi|320201331|gb|EFW75912.1| Ribonuclease PH [Escherichia coli EC4100B]
 gi|323155294|gb|EFZ41477.1| ribonuclease PH [Escherichia coli EPECa14]
 gi|323173236|gb|EFZ58865.1| ribonuclease PH [Escherichia coli LT-68]
 gi|323179387|gb|EFZ64954.1| ribonuclease PH [Escherichia coli 1180]
 gi|323944096|gb|EGB40176.1| ribonuclease PH [Escherichia coli H120]
 gi|323959891|gb|EGB55539.1| ribonuclease PH [Escherichia coli H489]
 gi|323971285|gb|EGB66530.1| ribonuclease PH [Escherichia coli TA007]
 gi|332750601|gb|EGJ81009.1| ribonuclease PH [Shigella flexneri 4343-70]
 gi|332751354|gb|EGJ81757.1| ribonuclease PH [Shigella flexneri 2747-71]
 gi|332764155|gb|EGJ94392.1| ribonuclease PH [Shigella flexneri 2930-71]
 gi|332996132|gb|EGK15759.1| ribonuclease PH [Shigella flexneri VA-6]
 gi|332997420|gb|EGK17036.1| ribonuclease PH [Shigella flexneri K-218]
 gi|332997778|gb|EGK17389.1| ribonuclease PH [Shigella flexneri K-272]
 gi|333012908|gb|EGK32285.1| ribonuclease PH [Shigella flexneri K-304]
 gi|333013313|gb|EGK32685.1| ribonuclease PH [Shigella flexneri K-227]
          Length = 238

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|259418160|ref|ZP_05742079.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
 gi|259347066|gb|EEW58880.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
          Length = 237

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PV+ I+ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVTMDPLVDPVSAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    S + M   +  A +G   +    
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTSELAEMQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAACA 237



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 82/229 (35%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RSVSIETG-FTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 125 TRCASITGGWVALRLAVNKLMKAGDVTMDPLVDPVSAISCGIYAGQPVLDLDYPEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   + + +  E +  S D + + +         + E   
Sbjct: 185 VDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTSELAEMQK 233


>gi|238755573|ref|ZP_04616910.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
 gi|238706173|gb|EEP98553.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
          Length = 238

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRALEQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHSRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVIQADGGTRTASISGACVALADALNKLVANGKLKSNPMKGLVAAVSVGIV----KGKAM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIESIFQAQ 232

Query: 536 SKVLSE 541
             VL +
Sbjct: 233 RAVLEQ 238



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 80/212 (37%), Gaps = 25/212 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             + P    +   +     + I R+I RS+R         E  +    +V+Q D  +   
Sbjct: 71  HSRNPREAAK--GKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQADGGTRTA 128

Query: 128 VVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFV 178
            +S    + A  L+ L         P +G V    V  + G+ + +    ED        
Sbjct: 129 SISGACVALADALNKLVANGKLKSNPMKGLVAAVSVGIVKGKAMCDLEYVEDSA------ 182

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
           + T   V+M+E +   +      +   F H E
Sbjct: 183 AETDMNVVMME-DGRMIEVQGTAEGEPFSHEE 213


>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
           6242]
 gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
           burtonii DSM 6242]
          Length = 343

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 12/235 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             + +  +R+DGR  + +R ++ ++G+L R  GS     G+ + +  V  G R  E +  
Sbjct: 7   KFIDENGLRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAV-YGPR--ELHPR 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L           YN    +  +  R G PSRR     +++  A   V+ +       + 
Sbjct: 64  RLQRPSEALVRYRYNMAAFSVEDRIRPG-PSRRSTEISKVSGEAFETVVMKQFYPGAVID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +E+ ++D  +  A +  ++LAL+DAG+P+   VA  A+G V    D  ++ D++  ED
Sbjct: 123 VFAEVLQADAGTRTAAINAATLALVDAGIPMKGLVAACAVGKV----DGQLVIDLNKPED 178

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G  D  +A T+ G IT +QMD   G ++ + +   ++  ++G   I     + 
Sbjct: 179 NYGDADLPIAMTEDGEITLLQMD---GNLTADEIAKGVEMVRKGCEQIFAIQKEA 230



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 122/317 (38%), Gaps = 21/317 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +E G ++R +DG+    +G   VLA V   R L   +   P    +   Y    ++
Sbjct: 25  RPMTVEMGVLSR-ADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALVRYRYNMAAFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
           V        R    P+     IS++   +   +  K +       V   V+Q D      
Sbjct: 84  VED------RIRPGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVLQADAG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDAVL 186
             ++ AA+ AL+ +G+P +G V    V  ++GQ V++    ED  G  DL ++ T+D  +
Sbjct: 136 TAAINAATLALVDAGIPMKGLVAACAVGKVDGQLVIDLNKPEDNYGDADLPIAMTEDGEI 195

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
            +      L+ D +   +      C+ +     +           ++  + ++L+ E+ +
Sbjct: 196 TLLQMDGNLTADEIAKGVEMVRKGCEQIFAIQKEALLSKFGTTDEMEILEEAELQAEVEK 255

Query: 247 --MIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
             ++++   VS    E+    +  +         F+ +       E   +F +    V  
Sbjct: 256 SGIVEDVEAVSDAEDEELEGEENEELELPDEEEAFTDDGEEDASDEAEDLFGE---DVSE 312

Query: 305 TVMLDKKVRMDGRDSET 321
             + +     D   SET
Sbjct: 313 FEITENAESEDNSSSET 329


>gi|15804184|ref|NP_290223.1| ribonuclease PH [Escherichia coli O157:H7 EDL933]
 gi|15833772|ref|NP_312545.1| ribonuclease PH [Escherichia coli O157:H7 str. Sakai]
 gi|74314123|ref|YP_312542.1| ribonuclease PH [Shigella sonnei Ss046]
 gi|82546006|ref|YP_409953.1| ribonuclease PH [Shigella boydii Sb227]
 gi|117625915|ref|YP_859238.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157158506|ref|YP_001465123.1| ribonuclease PH [Escherichia coli E24377A]
 gi|161486067|ref|NP_756329.2| ribonuclease PH [Escherichia coli CFT073]
 gi|162138338|ref|YP_543146.2| ribonuclease PH [Escherichia coli UTI89]
 gi|168748709|ref|ZP_02773731.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|168753467|ref|ZP_02778474.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|168759740|ref|ZP_02784747.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|168766063|ref|ZP_02791070.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|168772391|ref|ZP_02797398.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|168779798|ref|ZP_02804805.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|168785519|ref|ZP_02810526.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|168798588|ref|ZP_02823595.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|170680501|ref|YP_001745943.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187733771|ref|YP_001882340.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|191167816|ref|ZP_03029622.1| ribonuclease PH [Escherichia coli B7A]
 gi|193063848|ref|ZP_03044935.1| ribonuclease PH [Escherichia coli E22]
 gi|193070385|ref|ZP_03051327.1| ribonuclease PH [Escherichia coli E110019]
 gi|194430060|ref|ZP_03062565.1| ribonuclease PH [Escherichia coli B171]
 gi|194431006|ref|ZP_03063299.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|195936204|ref|ZP_03081586.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4024]
 gi|208807479|ref|ZP_03249816.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208812475|ref|ZP_03253804.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208819811|ref|ZP_03260131.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209399306|ref|YP_002273121.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209921114|ref|YP_002295198.1| ribonuclease PH [Escherichia coli SE11]
 gi|217324320|ref|ZP_03440404.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|227883811|ref|ZP_04001616.1| ribonuclease PH [Escherichia coli 83972]
 gi|237703414|ref|ZP_04533895.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|254795598|ref|YP_003080435.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|256021353|ref|ZP_05435218.1| ribonuclease PH [Shigella sp. D9]
 gi|256025627|ref|ZP_05439492.1| ribonuclease PH [Escherichia sp. 4_1_40B]
 gi|260846592|ref|YP_003224370.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|261224174|ref|ZP_05938455.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254784|ref|ZP_05947317.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK966]
 gi|291285014|ref|YP_003501832.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|293407266|ref|ZP_06651190.1| rph [Escherichia coli FVEC1412]
 gi|293413077|ref|ZP_06655745.1| ribonuclease PH [Escherichia coli B354]
 gi|293417104|ref|ZP_06659731.1| ribonuclease PH [Escherichia coli B185]
 gi|293463967|ref|ZP_06664381.1| ribonuclease PH [Escherichia coli B088]
 gi|298383012|ref|ZP_06992607.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|300815118|ref|ZP_07095343.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|300822413|ref|ZP_07102553.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300898578|ref|ZP_07116908.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300919790|ref|ZP_07136265.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300939243|ref|ZP_07153922.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300948023|ref|ZP_07162164.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300954463|ref|ZP_07166913.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300984904|ref|ZP_07177192.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|301018972|ref|ZP_07183195.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|301028402|ref|ZP_07191648.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|301047433|ref|ZP_07194512.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|301644309|ref|ZP_07244311.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|307140341|ref|ZP_07499697.1| ribonuclease PH [Escherichia coli H736]
 gi|307314272|ref|ZP_07593880.1| ribonuclease PH [Escherichia coli W]
 gi|309797616|ref|ZP_07692004.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|331644361|ref|ZP_08345490.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331649458|ref|ZP_08350544.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331655275|ref|ZP_08356274.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331659963|ref|ZP_08360901.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331665268|ref|ZP_08366169.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331670483|ref|ZP_08371322.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331675122|ref|ZP_08375879.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331679734|ref|ZP_08380404.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331685306|ref|ZP_08385892.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332282587|ref|ZP_08395000.1| ribonuclease PH [Shigella sp. D9]
 gi|54039263|sp|P66680|RNPH_ECO57 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54042177|sp|P66679|RNPH_ECOL6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123558299|sp|Q31UY3|RNPH_SHIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123615832|sp|Q3YW05|RNPH_SHISS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228279|sp|A1AHH4|RNPH_ECOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991083|sp|A7ZTJ4|RNPH_ECO24 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736905|sp|B5YWE1|RNPH_ECO5E RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736906|sp|B6I3M0|RNPH_ECOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736907|sp|B1LK80|RNPH_ECOSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736941|sp|B2TTV7|RNPH_SHIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|12518399|gb|AAG58787.1|AE005591_11 RNase PH [Escherichia coli O157:H7 str. EDL933]
 gi|13363993|dbj|BAB37941.1| RNase PH [Escherichia coli O157:H7 str. Sakai]
 gi|73857600|gb|AAZ90307.1| RNase PH [Shigella sonnei Ss046]
 gi|81247417|gb|ABB68125.1| RNase PH [Shigella boydii Sb227]
 gi|115515039|gb|ABJ03114.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157080536|gb|ABV20244.1| ribonuclease PH [Escherichia coli E24377A]
 gi|170518219|gb|ACB16397.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187430763|gb|ACD10037.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|187771578|gb|EDU35422.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|188016889|gb|EDU55011.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|189002636|gb|EDU71622.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|189359228|gb|EDU77647.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|189364689|gb|EDU83108.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|189369513|gb|EDU87929.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|189374286|gb|EDU92702.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|189378769|gb|EDU97185.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|190902159|gb|EDV61902.1| ribonuclease PH [Escherichia coli B7A]
 gi|192930563|gb|EDV83170.1| ribonuclease PH [Escherichia coli E22]
 gi|192956324|gb|EDV86785.1| ribonuclease PH [Escherichia coli E110019]
 gi|194411887|gb|EDX28204.1| ribonuclease PH [Escherichia coli B171]
 gi|194420461|gb|EDX36537.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|208727280|gb|EDZ76881.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208733752|gb|EDZ82439.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208739934|gb|EDZ87616.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209160706|gb|ACI38139.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209754598|gb|ACI75606.1| RNase PH [Escherichia coli]
 gi|209754600|gb|ACI75607.1| RNase PH [Escherichia coli]
 gi|209754602|gb|ACI75608.1| RNase PH [Escherichia coli]
 gi|209754604|gb|ACI75609.1| RNase PH [Escherichia coli]
 gi|209754606|gb|ACI75610.1| RNase PH [Escherichia coli]
 gi|209914373|dbj|BAG79447.1| ribonuclease PH [Escherichia coli SE11]
 gi|217320541|gb|EEC28965.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|222035351|emb|CAP78096.1| ribonuclease PH [Escherichia coli LF82]
 gi|226902678|gb|EEH88937.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|227839089|gb|EEJ49555.1| ribonuclease PH [Escherichia coli 83972]
 gi|254594998|gb|ACT74359.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|257761739|dbj|BAI33236.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|281180689|dbj|BAI57019.1| ribonuclease PH [Escherichia coli SE15]
 gi|284923676|emb|CBG36773.1| ribonuclease PH [Escherichia coli 042]
 gi|290764887|gb|ADD58848.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|291321599|gb|EFE61035.1| ribonuclease PH [Escherichia coli B088]
 gi|291426077|gb|EFE99111.1| rph [Escherichia coli FVEC1412]
 gi|291431135|gb|EFF04128.1| ribonuclease PH [Escherichia coli B185]
 gi|291468724|gb|EFF11217.1| ribonuclease PH [Escherichia coli B354]
 gi|294492761|gb|ADE91517.1| ribonuclease PH [Escherichia coli IHE3034]
 gi|298276848|gb|EFI18366.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|299878513|gb|EFI86724.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|300300641|gb|EFJ57026.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|300318542|gb|EFJ68326.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300357741|gb|EFJ73611.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300399466|gb|EFJ83004.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|300408333|gb|EFJ91871.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|300413143|gb|EFJ96453.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300452418|gb|EFK16038.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300455842|gb|EFK19335.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300525060|gb|EFK46129.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300532010|gb|EFK53072.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|301077347|gb|EFK92153.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|306906095|gb|EFN36614.1| ribonuclease PH [Escherichia coli W]
 gi|307555742|gb|ADN48517.1| ribonuclease PH [Escherichia coli ABU 83972]
 gi|307628716|gb|ADN73020.1| ribonuclease PH [Escherichia coli UM146]
 gi|308118803|gb|EFO56065.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|312948204|gb|ADR29031.1| ribonuclease PH [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062931|gb|ADT77258.1| ribonuclease PH [Escherichia coli W]
 gi|315285457|gb|EFU44902.1| ribonuclease PH [Escherichia coli MS 110-3]
 gi|315296969|gb|EFU56249.1| ribonuclease PH [Escherichia coli MS 16-3]
 gi|315618654|gb|EFU99240.1| ribonuclease PH [Escherichia coli 3431]
 gi|320176298|gb|EFW51358.1| Ribonuclease PH [Shigella dysenteriae CDC 74-1112]
 gi|320179979|gb|EFW54921.1| Ribonuclease PH [Shigella boydii ATCC 9905]
 gi|320186817|gb|EFW61537.1| Ribonuclease PH [Shigella flexneri CDC 796-83]
 gi|320191306|gb|EFW65956.1| Ribonuclease PH [Escherichia coli O157:H7 str. EC1212]
 gi|320193850|gb|EFW68483.1| Ribonuclease PH [Escherichia coli WV_060327]
 gi|320639550|gb|EFX09158.1| ribonuclease PH [Escherichia coli O157:H7 str. G5101]
 gi|320644989|gb|EFX14019.1| ribonuclease PH [Escherichia coli O157:H- str. 493-89]
 gi|320650256|gb|EFX18745.1| ribonuclease PH [Escherichia coli O157:H- str. H 2687]
 gi|320661342|gb|EFX28766.1| ribonuclease PH [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666356|gb|EFX33355.1| ribonuclease PH [Escherichia coli O157:H7 str. LSU-61]
 gi|323160749|gb|EFZ46685.1| ribonuclease PH [Escherichia coli E128010]
 gi|323166871|gb|EFZ52610.1| ribonuclease PH [Shigella sonnei 53G]
 gi|323182671|gb|EFZ68074.1| ribonuclease PH [Escherichia coli 1357]
 gi|323189449|gb|EFZ74730.1| ribonuclease PH [Escherichia coli RN587/1]
 gi|323376476|gb|ADX48744.1| ribonuclease PH [Escherichia coli KO11]
 gi|323934812|gb|EGB31194.1| ribonuclease PH [Escherichia coli E1520]
 gi|323939598|gb|EGB35804.1| ribonuclease PH [Escherichia coli E482]
 gi|323949882|gb|EGB45766.1| ribonuclease PH [Escherichia coli H252]
 gi|323954817|gb|EGB50597.1| ribonuclease PH [Escherichia coli H263]
 gi|324008099|gb|EGB77318.1| ribonuclease PH [Escherichia coli MS 57-2]
 gi|324019680|gb|EGB88899.1| ribonuclease PH [Escherichia coli MS 117-3]
 gi|324111538|gb|EGC05519.1| ribonuclease PH [Escherichia fergusonii B253]
 gi|324116018|gb|EGC09944.1| ribonuclease PH [Escherichia coli E1167]
 gi|326337358|gb|EGD61193.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1044]
 gi|326339883|gb|EGD63690.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1125]
 gi|330909705|gb|EGH38219.1| ribonuclease PH [Escherichia coli AA86]
 gi|331036655|gb|EGI08881.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331041956|gb|EGI14100.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331047290|gb|EGI19368.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331053178|gb|EGI25211.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331057778|gb|EGI29764.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331062545|gb|EGI34465.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331068031|gb|EGI39429.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331072906|gb|EGI44231.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331077677|gb|EGI48889.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332084483|gb|EGI89678.1| ribonuclease PH [Shigella dysenteriae 155-74]
 gi|332084823|gb|EGI90006.1| ribonuclease PH [Shigella boydii 5216-82]
 gi|332089330|gb|EGI94434.1| ribonuclease PH [Shigella boydii 3594-74]
 gi|332104939|gb|EGJ08285.1| ribonuclease PH [Shigella sp. D9]
          Length = 238

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
 gi|123652029|sp|Q4K3R6|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|68347641|gb|AAY95247.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
          Length = 240

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 97/247 (39%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL+D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMNEIFQL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QQAALAD 240



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL+ +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ T   +  V+  A         +   +         + +        
Sbjct: 189 LNVVMTSTGGFI-EVQGTAEGAPFQPAELNAMLALAQQGMNEIFQLQQAALAD 240


>gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
 gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
          Length = 241

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR +  +R +    G+++  HGS L   GDT+ +   T+    +E       G +  
Sbjct: 8   RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATI----EEGVPGWRKGAKAG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +TG+  +    +R  R +   RL  R++  V+   A   YT+ +  ++ 
Sbjct: 64  WVTAEYAMLPASTGKRCKREYANRKGRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVI 123

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL D             +P++  VA I+MG+V    D   + D+
Sbjct: 124 QADGGTRTASITGAWVALHDALAMWVEAGKIERIPLTGQVAAISMGVV----DGNTMLDL 179

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  +  TD+G I  +Q   +        +   L    +G   ++    + 
Sbjct: 180 DYSEDSHAEVDMNLVATDTGEIIELQGTGEQAPFDRKRLNALLDLGDKGIAELIELQRQA 239



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 30/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+KL  G + + + G+ LA +G+T VL     +  +   + G     +T  Y     + 
Sbjct: 18  RPVKLTRGVM-KHAHGSCLAEFGDTRVLCAATIEEGVPGWRKGAKAGWVTAEYAMLPAST 76

Query: 71  G-KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
           G +    Y  R+ R     + I R+I RS+R + +     E    V  +V+Q D      
Sbjct: 77  GKRCKREYANRKGR----SMEIERLIGRSLRTVVNMKALGEYTVTVDCDVIQADGG--TR 130

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            +  +P  G V    +  ++G  +L+    ED   +  
Sbjct: 131 TASITGAWVALHDALAMWVEAGKIERIPLTGQVAAISMGVVDGNTMLDLDYSEDSHAEVD 190

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++L  + T + ++ ++    Q       +   +  G      +IE   +   
Sbjct: 191 MNLVATDTGE-IIELQGTGEQAPFDRKRLNALLDLGDKGIAELIELQRQALA 241


>gi|157783152|ref|YP_001491547.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
 gi|298351814|sp|P0CG19|RNPH_ECOLI RecName: Full=Inactive ribonuclease PH; Short=RNase PH; AltName:
           Full=tRNA nucleotidyltransferase
 gi|290493|gb|AAA61996.1| RNase PH [Escherichia coli]
 gi|157672248|gb|ABV59576.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 228

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 24/218 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGIS 513
            D+   ED     D  V  T+ G I  +Q   +    +
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFT 210



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL+           L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
 gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
          Length = 251

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 109/256 (42%), Gaps = 22/256 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R I       +   GS L   G T+ I   T+    ++     L G+ +
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATV----EDSVPRWLKGSGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T          G  + R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD---------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL+D            PI+   A I++G+  DG     ++D
Sbjct: 117 DVIQADGGTRTASITGAFVALVDAVDFTFGGAGKFPITNFCAAISVGIGPDGP----ITD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  T SG +  +Q   + G  + + +   L  A+     ++ +  +
Sbjct: 173 LCYEEDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQRE 232

Query: 538 VLSESRLQLGEFTPRV 553
           VL  +  ++G+  P  
Sbjct: 233 VLGATADKVGKEYPTA 248



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 83/238 (34%), Gaps = 28/238 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T      ++G+VL   G+T V+ T   + S+     G     +T  Y     + 
Sbjct: 12  RPIKI-TRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVTAEYSLLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -QTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
            S+  A  AL+ +           P         V       + +   +ED      +++
Sbjct: 128 ASITGAFVALVDAVDFTFGGAGKFPITNFCAAISVGIGPDGPITDLCYEEDSAAIVDMNV 187

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL----AKMCAKE 228
             +G+ + ++ V+      +   D +   +         ++    ++    A    KE
Sbjct: 188 VRTGSGN-MVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGATADKVGKE 244


>gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
 gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
          Length = 240

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R +  +R +      L+   GS L   G+T+ I  V+     +E+    L GT +
Sbjct: 2   IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVS----MEEKVPPFLKGTNQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        G  + R     RL  R++  V+  +     T+ I +
Sbjct: 58  GWLTAEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDT 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D             +PI + VA +++G+V    D  IL
Sbjct: 118 DVIQADGGTRTAAITGAFVALYDALEKLKRDGVIKEIPIKEFVAAVSVGIV----DGEIL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S +ED    +D  V  T+SG    +Q   +    +   +   L  AK+G + ++   
Sbjct: 174 LDLSANEDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTYEQLQQMLNLAKQGIMKLIEIQ 233

Query: 536 SKV 538
            K 
Sbjct: 234 KKA 236



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 36/234 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T +  +   G+VL   GET V+ TV  +  +     G +   LT  Y       
Sbjct: 13  RPVKI-TRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLTAEY------- 64

Query: 71  GKIPGGYLRR------ESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDL 122
           G +PG    R      +         I R+I RS+R +  FSK  +    +  +V+Q D 
Sbjct: 65  GMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDTDVIQADG 124

Query: 123 ESSPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DED 170
                  ++  A  AL            +  +P +  V    V  ++G+ +L+    ++ 
Sbjct: 125 G--TRTAAITGAFVALYDALEKLKRDGVIKEIPIKEFVAAVSVGIVDGEILLDLSANEDM 182

Query: 171 QGSLDLFVSGTQ-DAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
           +  +D+ V  T+    + ++  A +   + + +   +         +IE   K 
Sbjct: 183 RAEVDMNVVMTESGKFVEIQGTAEKTPFTYEQLQQMLNLAKQGIMKLIEIQKKA 236


>gi|313501268|gb|ADR62634.1| Rph [Pseudomonas putida BIRD-1]
          Length = 240

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+   +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGE----A 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +            L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGINEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QQAALAD 240



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ +    + V+  A       +     +         + E        
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGINEIFELQQAALAD 240


>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
 gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
          Length = 241

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 20/249 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE----DE 360
             +  + +R+DGR    +R + AQ+G + +  GS++F  G+T+ I  V  G RE     +
Sbjct: 2   EYVSPEGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAV-YGPREVQNRSQ 60

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           Q +D      +      Y     +TG+  R     RR      + R+ +   +       
Sbjct: 61  QIID------QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPR 114

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  ++ ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++
Sbjct: 115 SQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTP----LLDLN 170

Query: 481 GDEDHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             ED  G  D  V        +T +QMD K   +  +     +Q A  G   I N + ++
Sbjct: 171 YVEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREI 227

Query: 539 LSESRLQLG 547
           L E+  QL 
Sbjct: 228 LLENTKQLE 236



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 14/215 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R L+ + G +++ +DG+ +   G T V+A V   R +++      D   +   Y    ++
Sbjct: 20  RQLRAQIGAVSK-ADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQALVRCEYTMANFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G        R+ +       IS +I +++           +Q+ I V     +      
Sbjct: 79  TGD-----RMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQADGGTRSA 133

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGT---QDAVL 186
            + AA+ AL  +G+P    V      Y+N   +L+    ED         G     D V 
Sbjct: 134 CINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVT 193

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++++A  L  D   + +      CK +   I ++
Sbjct: 194 LLQMDAK-LPIDTFENVMQLAVEGCKAIANYIREI 227


>gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
 gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
          Length = 255

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 24/253 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +       +   GS L   G+T+ I    +    +E+    L  + + 
Sbjct: 3   RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMV----EERVPHFLKNSGKG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  RA+  V+   A    T+ I  +
Sbjct: 59  WVTAEYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL++             +PI   V+ I++G+V D      + 
Sbjct: 119 VIQADGGTRTASITGAFIALVEAINSVKEAKKITYIPIKNYVSAISVGIVNDQP----VL 174

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD      +Q   +    S + ++  L+  + G   ++    
Sbjct: 175 DLCYEEDSKAMVDMNIVMTDMKEFIEVQGTGEEAPFSRDSLMELLRLGEEGNAQLIALQK 234

Query: 537 KVLSESRLQLGEF 549
           +VL     ++G+ 
Sbjct: 235 EVLGSLAEEIGKN 247



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 30/239 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+K  T    + + G+VL   GET V+ T  V +R            +T  Y     + 
Sbjct: 13  RPVKF-TKNYTKHAQGSVLVEMGETKVICTAMVEERVPHFLKNSGKGWVTAEYSMLPSST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                    R  +       I R+I R++R +       E    +  +V+Q D       
Sbjct: 72  NTRKIRESSR-GKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL+           ++ +P +  V    V  +N Q VL+   +ED      +
Sbjct: 129 ASITGAFIALVEAINSVKEAKKITYIPIKNYVSAISVGIVNDQPVLDLCYEEDSKAMVDM 188

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK----LAKMCAK 227
           ++ ++  ++ +  V+    +   S D +++ +  G      +I    +    LA+   K
Sbjct: 189 NIVMTDMKEFI-EVQGTGEEAPFSRDSLMELLRLGEEGNAQLIALQKEVLGSLAEEIGK 246


>gi|30264550|ref|NP_846927.1| ribonuclease PH [Bacillus anthracis str. Ames]
 gi|47530015|ref|YP_021364.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187372|ref|YP_030624.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49481507|ref|YP_038534.1| ribonuclease PH [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141017|ref|YP_085813.1| ribonuclease PH [Bacillus cereus E33L]
 gi|162382773|ref|YP_896797.2| ribonuclease PH [Bacillus thuringiensis str. Al Hakam]
 gi|165871495|ref|ZP_02216142.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167635642|ref|ZP_02393954.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|167641666|ref|ZP_02399911.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|170688310|ref|ZP_02879520.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|170708334|ref|ZP_02898778.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|177653076|ref|ZP_02935363.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190566932|ref|ZP_03019848.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|196034453|ref|ZP_03101862.1| ribonuclease PH [Bacillus cereus W]
 gi|196039169|ref|ZP_03106475.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|196044912|ref|ZP_03112146.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|218905683|ref|YP_002453517.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225866464|ref|YP_002751842.1| ribonuclease PH [Bacillus cereus 03BB102]
 gi|227817261|ref|YP_002817270.1| ribonuclease PH [Bacillus anthracis str. CDC 684]
 gi|228929528|ref|ZP_04092547.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935800|ref|ZP_04098612.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948205|ref|ZP_04110489.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229093577|ref|ZP_04224678.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|229124021|ref|ZP_04253213.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|229186723|ref|ZP_04313881.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|229601018|ref|YP_002868764.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|254687030|ref|ZP_05150888.1| ribonuclease PH [Bacillus anthracis str. CNEVA-9066]
 gi|254724592|ref|ZP_05186375.1| ribonuclease PH [Bacillus anthracis str. A1055]
 gi|254736584|ref|ZP_05194290.1| ribonuclease PH [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741622|ref|ZP_05199309.1| ribonuclease PH [Bacillus anthracis str. Kruger B]
 gi|254754780|ref|ZP_05206815.1| ribonuclease PH [Bacillus anthracis str. Vollum]
 gi|254757612|ref|ZP_05209639.1| ribonuclease PH [Bacillus anthracis str. Australia 94]
 gi|301055992|ref|YP_003794203.1| ribonuclease PH [Bacillus anthracis CI]
 gi|61215848|sp|Q633V4|RNPH_BACCZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215928|sp|Q6HD42|RNPH_BACHK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216034|sp|Q81LA9|RNPH_BACAN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736884|sp|B7JQ74|RNPH_BACC0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808577|sp|C3PA74|RNPH_BACAA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808578|sp|C3L7T5|RNPH_BACAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808579|sp|C1ETS9|RNPH_BACC3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30259208|gb|AAP28413.1| tRNA nucleotidyltransferase [Bacillus anthracis str. Ames]
 gi|47505163|gb|AAT33839.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181299|gb|AAT56675.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49333063|gb|AAT63709.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974486|gb|AAU16036.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           cereus E33L]
 gi|164712792|gb|EDR18322.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167510373|gb|EDR85774.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|167529062|gb|EDR91817.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|170126709|gb|EDS95592.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|170667816|gb|EDT18569.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|172081600|gb|EDT66671.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190561923|gb|EDV15892.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|195992995|gb|EDX56954.1| ribonuclease PH [Bacillus cereus W]
 gi|196024400|gb|EDX63073.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|196029796|gb|EDX68397.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|218536266|gb|ACK88664.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225790478|gb|ACO30695.1| tRNA nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|227004760|gb|ACP14503.1| tRNA nucleotidyltransferase [Bacillus anthracis str. CDC 684]
 gi|228596736|gb|EEK54398.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|228659323|gb|EEL14971.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|228689786|gb|EEL43592.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|228811563|gb|EEM57900.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823857|gb|EEM69677.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830107|gb|EEM75725.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229265426|gb|ACQ47063.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|300378161|gb|ADK07065.1| ribonuclease PH [Bacillus cereus biovar anthracis str. CI]
          Length = 245

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEA 236


>gi|65321848|ref|ZP_00394807.1| COG0689: RNase PH [Bacillus anthracis str. A2012]
          Length = 258

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 186

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 187 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQ 246

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 247 KEALGDIVSHIE 258



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 25  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 84  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 140

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 141 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 200

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 201 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEA 249


>gi|312794043|ref|YP_004026966.1| ribonuclease ph [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181183|gb|ADQ41353.1| ribonuclease PH [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 258

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 25/257 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S       L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQ 232

Query: 536 SKVLSESRLQLGEFTPR 552
            +VL E   +L    P+
Sbjct: 233 KEVLGE-DCELVGSVPK 248



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       +I  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGICDGVEMLDLCFEEDSKAAVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++   + + +    E    S +     +  G    + +IE   ++
Sbjct: 188 NLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEV 235


>gi|308047849|ref|YP_003911415.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
 gi|307630039|gb|ADN74341.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
          Length = 238

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR ++ VR +S          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRSNGRAADQVRPVSITRNFTAHAEGSVLVAFGNTKVICTASV----EESVPRFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G  S R +   RL  R++   +   A    T+ I  
Sbjct: 57  GWITAEYGMLPRATHSRNDREAARGKQSGRTMEIQRLIGRSLRAAVDLEALGEVTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +ALMDA             P+ + +A I++G+V +      +
Sbjct: 117 DVIQADGGTRTAAITGACVALMDAIDHLKAKGVLKVSPLKQQIAAISVGVVGE----HAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G I  +Q   +    +   M+  +  AK G   ++   
Sbjct: 173 CDLDYVEDSSAETDMNVVMAEDGRIIEVQGTAEGEPFTYEQMLEMMALAKTGIEQLIAAQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAAYN 237



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 25/214 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T V+ T   + S+     G+    +T  Y     A          R  +
Sbjct: 24  AEGSVLVAFGNTKVICTASVEESVPRFLRGKGQGWITAEYGMLPRATHSRNDREAAR-GK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
            +   + I R+I RS+R         E  +    +V+Q D        ++  A  ALM +
Sbjct: 83  QSGRTMEIQRLIGRSLRAAVDLEALGEVTITIDCDVIQADGG--TRTAAITGACVALMDA 140

Query: 142 -------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                  G+    P +  +    V  +    V +    ED   +  +++ ++     ++ 
Sbjct: 141 IDHLKAKGVLKVSPLKQQIAAISVGVVGEHAVCDLDYVEDSSAETDMNVVMA-EDGRIIE 199

Query: 188 VEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           V+   E    + + +L+ +       + +I A  
Sbjct: 200 VQGTAEGEPFTYEQMLEMMALAKTGIEQLIAAQK 233


>gi|54307419|ref|YP_128439.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90412679|ref|ZP_01220680.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
 gi|61215939|sp|Q6LVN8|RNPH_PHOPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46911839|emb|CAG18637.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90326254|gb|EAS42673.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
          Length = 238

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   GDT+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   VA +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAVNSMIEKGTLKKSPIKGMVAAVSVGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK G   I+   
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGIADIVTMQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +     A  ++G+VL  +G+T V+ T   + ++     G+    +T  Y     A 
Sbjct: 12  RPITITRNFTAH-AEGSVLVEFGDTKVICTASVEENVPRWLKGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R         E    V  +V+Q D    
Sbjct: 71  ----HTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  AL            L   P +G V    V    G+ + +    ++    
Sbjct: 125 TRTASITGAMVALVDAVNSMIEKGTLKKSPIKGMVAAVSVGIYKGEAICDLEYLEDSAAE 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + +L  +    +    ++    +  +
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGIADIVTMQKQALE 237


>gi|187929359|ref|YP_001899846.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|309781786|ref|ZP_07676519.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|226736927|sp|B2U8D8|RNPH_RALPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187726249|gb|ACD27414.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|308919427|gb|EFP65091.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 238

 Score =  158 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++      +   GS L   GDTQ +   ++  +          G+  
Sbjct: 1   MRPSGRQPDQLRPVTLTRKFTRHAEGSVLVCFGDTQVLCTASVLPK----VPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R     RL  RA+  V    A   +TL +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A  DA           G P+   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAFVAAYDAVSVMREKGQLVGDPVRDFVAAVSVGVV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    S   M   L  A +G   +++  
Sbjct: 173 LDLDYPEDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDAMLGLADQGIRTLISLQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           RP+ L T +  R ++G+VL  +G+T VL T  V  +    K G     +T  Y     + 
Sbjct: 12  RPVTL-TRKFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A   +           G P    V    V  ++G  VL+    ED      +
Sbjct: 128 ASITGAFVAAYDAVSVMREKGQLVGDPVRDFVAAVSVGVVDGVPVLDLDYPEDSACDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    S   +   +       + +I    + 
Sbjct: 188 NVVMTGSGGFVEVQGTAEGTPFSRAEMDAMLGLADQGIRTLISLQKQA 235


>gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
 gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
          Length = 238

 Score =  158 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +S + G+ +   GS L   G+T  +   +L    +++    L G  R
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASL----EDKPPPWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  + R     RL  R++  V    A     + I  
Sbjct: 57  GWVTAEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LAL D              P+   VA ++ G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAWLALRDCFEWMRSRSIIKDNPLRDHVAAVSCGIF----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T S G+  +Q   ++   S + +   L  A+ G   ++   
Sbjct: 173 IDLDYAEDSTAETDANFVITGSGGLVEIQATAEVAVFSPDELTSLLTLAQGGVADLVALQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  E G +AR ++G+ L  +G T VL     +        GQ    +T  Y     A 
Sbjct: 12  RPVSFERG-VARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + T     I R+I RS+R + +     E Q++   +V+Q D    
Sbjct: 71  ----HTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL           ++   P    V        NG  V++    ED   +
Sbjct: 125 TRTASITGAWLALRDCFEWMRSRSIIKDNPLRDHVAAVSCGIFNGTPVIDLDYAEDSTAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G+   ++ ++  A     S D +   +         ++        
Sbjct: 185 TDANFVITGS-GGLVEIQATAEVAVFSPDELTSLLTLAQGGVADLVALQKAALA 237


>gi|262273502|ref|ZP_06051316.1| ribonuclease PH [Grimontia hollisae CIP 101886]
 gi|262222480|gb|EEY73791.1| ribonuclease PH [Grimontia hollisae CIP 101886]
          Length = 238

 Score =  158 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R ++          GS L   GDT+ I   ++    +E     L G  +
Sbjct: 1   MRPSGREVGQIRPVTITRHFTAHAEGSVLVAFGDTKVICTASV----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL D              P+   VA +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGASVALADALNKLVSEGKLKENPMKGHVAAVSVGIF----EGTPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    +   +   L  A +G   I+   
Sbjct: 173 CDLEYVEDSAADTDMNVVMLEDGRMIEVQGTAEAEPFTAEELNAMLSLAAKGIQDIVAIQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 62.2 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 83/233 (35%), Gaps = 38/233 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+ + T      ++G+VL  +G+T V+ T     S+++G   F        +T  Y   
Sbjct: 12  RPVTI-TRHFTAHAEGSVLVAFGDTKVICTA----SVEEGVPRFLKGKGQGWITAEYGML 66

Query: 67  TYAVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHD 121
             A         RRE    +     + I R+I RS+R      K       V  +V+Q D
Sbjct: 67  PRAT----HTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDCDVIQAD 122

Query: 122 LESSPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DE 169
                   S+  AS AL            L   P +G V    V    G  + +    ++
Sbjct: 123 GG--TRTASITGASVALADALNKLVSEGKLKENPMKGHVAAVSVGIFEGTPICDLEYVED 180

Query: 170 DQGSLDLFVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
                D+ V   +D  ++ V+   EA   + + +   +       + ++    
Sbjct: 181 SAADTDMNVVMLEDGRMIEVQGTAEAEPFTAEELNAMLSLAAKGIQDIVAIQK 233


>gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612]
 gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612]
          Length = 240

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +E +R +S      +   G+ L   G+T+ I    +    +++    L G ++ 
Sbjct: 3   RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMV----EDKVPPFLRGEKKG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G    R +   RL  R++  V+        T+ I  +
Sbjct: 59  WVTAEYEMLPSSTGSRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA             PI+  VA  ++G+ ++      + 
Sbjct: 119 VIQADGGTRTASITGAFVALYDAVTWLMEEEIIDEWPINGYVAATSVGINQNEP----IM 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD G I  +Q   +    + +     L   + G   ++N   
Sbjct: 175 DLCYEEDSTAEVDMNIVMTDEGEIVEIQGTGEERPFTRDEFQKLLALGEDGVYQLINIQK 234

Query: 537 KV 538
           + 
Sbjct: 235 EA 236



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T    R + GAVL   G T V+ T + +  +     G+    +T  Y+    + 
Sbjct: 13  RPVSI-TRHFTRNAQGAVLIEVGNTKVICTAMVEDKVPPFLRGEKKGWVTAEYEMLPSST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G    G  R   +     + I R+I RS+R +    K  +    +  +V+Q D       
Sbjct: 72  GS-RKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            +   P  G V    V     + +++   +ED   +  +
Sbjct: 129 ASITGAFVALYDAVTWLMEEEIIDEWPINGYVAATSVGINQNEPIMDLCYEEDSTAEVDM 188

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++  +  ++ ++    +   + D     +  G +    +I    + 
Sbjct: 189 NIVMT-DEGEIVEIQGTGEERPFTRDEFQKLLALGEDGVYQLINIQKEA 236


>gi|290477306|ref|YP_003470227.1| RNase PH [Xenorhabdus bovienii SS-2004]
 gi|289176660|emb|CBJ83469.1| RNase PH [Xenorhabdus bovienii SS-2004]
          Length = 242

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R  GR +  VR I       +   GS L   GDT+ +   ++    +E     L G  
Sbjct: 5   GKRPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASV----EEGIPRFLKGQG 60

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT   +      G  + R +   RL  R++   +       YT+ + 
Sbjct: 61  QGWITAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLD 120

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +AL+D              P+   VA +++G+V+       
Sbjct: 121 CDVIQADGGTRTAAISGACVALVDALNKLVADGKLKKSPMKSMVAAVSVGIVEGEG---- 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+   ED     D  +   D G +  +Q   +    S + ++  L  AK G   I   
Sbjct: 177 LCDLEYVEDSAAETDMNIVMMDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFAA 236

Query: 535 MSKV 538
               
Sbjct: 237 QRDA 240



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 17  RPIKM-TRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                    R  + T   + I R+I RS+R      K  +    +  +V+Q D       
Sbjct: 76  NSRNAREAAR-GKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQADGG--TRT 132

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL   L+ L         P +  V    V  + G+ + +    ED   +  +
Sbjct: 133 AAISGACVALVDALNKLVADGKLKKSPMKSMVAAVSVGIVEGEGLCDLEYVEDSAAETDM 192

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ +      ++ V+   E    S D +L  +       + +  A     K
Sbjct: 193 NIVM-MDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFAAQRDALK 242


>gi|207742729|ref|YP_002259121.1| c terminaus of polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
 gi|206594123|emb|CAQ61050.1| c terminaus of polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
          Length = 180

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 102/157 (64%)

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS 598
           +  +R +L    PR+  + I P++IR+VIG GG  I+ + ++TG  ++I +DGT+ IAS+
Sbjct: 1   MGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAST 60

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           S   +  A+  I  IT   EV KIY G V+K++DFGA V+    +DGL+HIS+++ ERV 
Sbjct: 61  SSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVN 120

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           + SD VKEG  V VKLL  D++G+++LS+K      G
Sbjct: 121 QVSDYVKEGQLVRVKLLSTDEKGRMRLSIKAAKAEEG 157


>gi|85060191|ref|YP_455893.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
 gi|123518740|sp|Q2NQT7|RNPH_SODGM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84780711|dbj|BAE75488.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
          Length = 239

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSVQQVRPVTITRHFTRHAEGSVLIAFGDTRVLCTASV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +  T    YT+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALADALSSMQKKGQLKTNPMKGFVAAISVGIVAGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S+  +   L+ A+ G   ++   
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSQQELNTLLELARGGIDSLVQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 28/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    R ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTI-TRHFTRHAEGSVLIAFGDTRVLCTASVEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + +     + I R+I RS+R     +K  +    +  +V+Q D       
Sbjct: 71  -HTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL   LS +         P +G V    V  + G+ V +    ED   +  +
Sbjct: 128 ASITGACVALADALSSMQKKGQLKTNPMKGFVAAISVGIVAGEAVCDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++ +      ++ V+   E    S+  +   +         +++A    A +  
Sbjct: 188 NVVM-MEDGRMIEVQGTAEGEPFSQQELNTLLELARGGIDSLVQAQK--AALVG 238


>gi|238902734|ref|YP_002928530.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|298351813|sp|P0CG18|RNPH_ECOBW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|238860742|gb|ACR62740.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|260447338|gb|ACX37760.1| ribonuclease PH [Escherichia coli DH1]
 gi|315138225|dbj|BAJ45384.1| ribonuclease PH [Escherichia coli DH1]
          Length = 238

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   +++ L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL+           L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|188495519|ref|ZP_03002789.1| ribonuclease PH [Escherichia coli 53638]
 gi|188490718|gb|EDU65821.1| ribonuclease PH [Escherichia coli 53638]
 gi|332345611|gb|AEE58945.1| ribonuclease PH [Escherichia coli UMNK88]
          Length = 238

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL+           L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
 gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
          Length = 243

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+   G  +   GS+L   G+T+ +   +      E     L G  + 
Sbjct: 5   REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFT----EGVPRWLKGEGKG 60

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  V+        T+ +  +
Sbjct: 61  WVTAEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A++ G+ +AL D                P+   V+ I++G++    D   
Sbjct: 121 VLQADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGII----DGTP 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T SG    +Q   +      + +   L  A  G   +   
Sbjct: 177 MLDLPYTEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQI 236

Query: 535 MSKV 538
             + 
Sbjct: 237 QREA 240



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  +R ++G+ L  +G T VL T  +   +     G+    +T  Y     A 
Sbjct: 15  RPITITRGW-SRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTAEYAMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + R       ISR+I RS+R + +     E  ++   +V+Q D       
Sbjct: 74  N-TRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAAL--MLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  A  AL   +S             P    V    V  I+G  +L+    ED   + 
Sbjct: 131 ASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTEDVRAET 190

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
            +++ V+G+    + V+  A       D +   +         + +   +   
Sbjct: 191 DMNVVVTGS-GKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQREALA 242


>gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
 gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
          Length = 255

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 26/252 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R++      L    GS L   G T+ +   +      E     L G   
Sbjct: 9   PRHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFT----EGVPRWLKGQGT 64

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S    R G    R     RL  R++  V+   A    T+ I  
Sbjct: 65  GWVTSEYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDC 124

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL D                P++  VA I++G+V       
Sbjct: 125 DVLQADGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQP--- 181

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  V  T S GI  +Q   +    S + +   L  A  G   +  
Sbjct: 182 -VLDLDYPEDSTAETDMNVVMTGSGGIVEVQGTAEGAPFSRDELNALLDLAADGIADLTT 240

Query: 534 EMSKVLSESRLQ 545
           +    L+    +
Sbjct: 241 KQRDALAADARE 252



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 27/225 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L  +G T VL    +   +     GQ    +T  Y+    +          R+ +
Sbjct: 32  AEGSCLVEFGRTRVLCAASFTEGVPRWLKGQGTGWVTSEYEMLPRSTN-TRSDREARKGK 90

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL--M 139
                  ISR+I RS+R +       E  ++   +V+Q D        S+  A  AL   
Sbjct: 91  VGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDVLQADGG--TRTASITGAYVALADA 148

Query: 140 LSGL-----------PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAV 185
           ++             P    V    V  + GQ VL+   P     +  +++ ++G+   +
Sbjct: 149 IADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLDLDYPEDSTAETDMNVVMTGS-GGI 207

Query: 186 LMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + V+  A     S D +   +    +    +           A+E
Sbjct: 208 VEVQGTAEGAPFSRDELNALLDLAADGIADLTTKQRDALAADARE 252


>gi|228917119|ref|ZP_04080677.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842537|gb|EEM87627.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLRAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLRAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEA 236


>gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
 gi|123602792|sp|Q3K4M0|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 97/247 (39%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL+D             G P+ + +  +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L+ AK+G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QKAALAD 240



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL+ +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ T   +  V+  A       + +   +         + E        
Sbjct: 189 LNVVMTSTGGFI-EVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240


>gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040]
 gi|122397509|sp|Q1GCL2|RNPH_SILST RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|99038992|gb|ABF65604.1| RNAse PH [Ruegeria sp. TM1040]
          Length = 237

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PV+ I+ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVTMDPLVDPVSAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    S + M   +  A +G   +    
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTSELAEMQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAACA 237



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 82/229 (35%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RSVSIETG-FTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 125 TRCASITGGWVALRLAVNKLMKAGDVTMDPLVDPVSAISCGIYAGQPVLDLDYPEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   + + +  E +  S D + + +         + E   
Sbjct: 185 VDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTSELAEMQK 233


>gi|229192693|ref|ZP_04319652.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
 gi|228590783|gb|EEK48643.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
          Length = 258

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 70  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 130 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 186

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 187 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 246

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 247 KEALGDIVSHIE 258



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 25  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 84  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 140

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 141 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 200

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 201 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEA 249


>gi|30022573|ref|NP_834204.1| ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42783632|ref|NP_980879.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206969838|ref|ZP_03230792.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206976011|ref|ZP_03236921.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217961976|ref|YP_002340546.1| ribonuclease PH [Bacillus cereus AH187]
 gi|222097944|ref|YP_002532001.1| ribonuclease ph [Bacillus cereus Q1]
 gi|228910315|ref|ZP_04074132.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|228960757|ref|ZP_04122396.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228987732|ref|ZP_04147843.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229048198|ref|ZP_04193767.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|229071999|ref|ZP_04205209.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|229081747|ref|ZP_04214240.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|229111953|ref|ZP_04241497.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|229129777|ref|ZP_04258744.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|229141223|ref|ZP_04269762.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|229147051|ref|ZP_04275411.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|229152684|ref|ZP_04280872.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|229158099|ref|ZP_04286169.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|229180760|ref|ZP_04308098.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|229198610|ref|ZP_04325312.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|296504969|ref|YP_003666669.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|61215974|sp|Q72ZT1|RNPH_BACC1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216033|sp|Q817P3|RNPH_BACCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736887|sp|B7HQP4|RNPH_BACC7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808580|sp|B9IZ73|RNPH_BACCQ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29898131|gb|AAP11405.1| Ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42739561|gb|AAS43487.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206735526|gb|EDZ52694.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206745763|gb|EDZ57160.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217063584|gb|ACJ77834.1| ribonuclease PH [Bacillus cereus AH187]
 gi|221242002|gb|ACM14712.1| ribonuclease PH [Bacillus cereus Q1]
 gi|228584892|gb|EEK43008.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|228602738|gb|EEK60221.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|228625418|gb|EEK82175.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|228630830|gb|EEK87471.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|228636439|gb|EEK92909.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|228642264|gb|EEK98556.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|228653693|gb|EEL09564.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|228671517|gb|EEL26817.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|228701592|gb|EEL54085.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|228711158|gb|EEL63123.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|228723185|gb|EEL74561.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|228772006|gb|EEM20461.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228798973|gb|EEM45948.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228849375|gb|EEM94212.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|296326021|gb|ADH08949.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|324328384|gb|ADY23644.1| ribonuclease PH [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEA 236


>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
 gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGR  + +R I  + G+L+   GS     G  + +  V  G R+       L+  
Sbjct: 10  DGRRIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAV-YGPRKV--QPKHLADP 66

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +      YN  P +  E  R G P RR +   +++R A+  ++ +      ++ I  E+
Sbjct: 67  TQAIVRYRYNMAPFSVEERKRPG-PDRRSVEISKVSREALESIIMKELFPRSSIDIFVEV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++D  S  A +  +S+AL+DAG+P+   +  +A+  V    D +++ D   +ED+ G  
Sbjct: 126 LQADAGSRTACLNAASVALVDAGIPMKGIITSVAVAKV----DGVLVLDPMKEEDNYGEA 181

Query: 490 DFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           D   A    +  I ++ +    G +++  ++ A++ AK+G + I     + 
Sbjct: 182 DIPFAFFIRNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREA 232



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 99/220 (45%), Gaps = 22/220 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + + +DG+     G+  V+A V   R ++      P    +   Y    ++
Sbjct: 23  RPIKIEAGVL-KNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVRYRYNMAPFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++   ++  +  K    ++   + + V+Q D  S   
Sbjct: 82  VEE------RKRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQADAGS--R 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS-----GT 181
              + AAS AL+ +G+P +G +    V  ++G  VL+P  +ED  G  D+  +     G 
Sbjct: 134 TACLNAASVALVDAGIPMKGIITSVAVAKVDGVLVLDPMKEEDNYGEADIPFAFFIRNGK 193

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++ +++++   ++++ ++ A+         + +   + 
Sbjct: 194 IESIALLQMDGR-VTKEELMQAVELAKKGAMEIYKLQREA 232


>gi|229163445|ref|ZP_04291396.1| Ribonuclease PH [Bacillus cereus R309803]
 gi|228620014|gb|EEK76889.1| Ribonuclease PH [Bacillus cereus R309803]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYIEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 25/229 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRL-DEDQGSLD 175
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ++ +  +D
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYIEDSKADVD 187

Query: 176 LFVSGT-QDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           + V  T +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEA 236


>gi|190890032|ref|YP_001976574.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
 gi|218516544|ref|ZP_03513384.1| ribonuclease PH [Rhizobium etli 8C-3]
 gi|226736928|sp|B3PZA2|RNPH_RHIE6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190695311|gb|ACE89396.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
          Length = 239

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +++    L  T +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EDKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D    +           +   VA I+ G+         
Sbjct: 117 DVIQADGGTRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGVFASQ----A 172

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    +E      +  AK G   ++  
Sbjct: 173 VIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFTSLMGLAKNGIGELVAL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     A 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GE----RMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+     AL                   +  V          Q V++    ED   
Sbjct: 125 TRTASITGGWIALYDCLKWMESRNMIKVDRVLKDHVAAISCGVFASQAVIDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G    ++ ++   E    +E+     +    N    ++    +   
Sbjct: 185 ETDANFVMTG-AGGIVEIQGTAEGTPFTEEEFTSLMGLAKNGIGELVALQKQAIA 238


>gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
 gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
          Length = 243

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++ +R +  Q   L    GS L   G+T+ I   T+    +E+      G+ + 
Sbjct: 3   RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATV----EEKVPPFQKGSGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATG  ++     G  + R +   RL  RA+  V+        T+ I  +
Sbjct: 59  WVTAEYGMLPRATGTRTQREVTRGKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA             PI + +A +++G V       +L 
Sbjct: 119 VIQADGGTRTASITGAFVALKDACRRLLKNKQIQKDPIIEALAAVSVGKVAGE----LLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED    +D  V  T  G    +Q   +      + +   L+ A++G   ++   +
Sbjct: 175 DLAYEEDAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQN 234

Query: 537 KVLSES 542
           + L+ES
Sbjct: 235 QALAES 240



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 23/218 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL T G T V+ T   +  +     G     +T  Y     A G      + R  + T
Sbjct: 27  GSVLITVGNTKVICTATVEEKVPPFQKGSGKGWVTAEYGMLPRATGTRTQREVTR-GKAT 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL----- 138
              + I R+I R++R +       E    +  +V+Q D        S+  A  AL     
Sbjct: 86  GRTMEIQRLIGRALRSVVDLQRLGERTIWIDCDVIQADGG--TRTASITGAFVALKDACR 143

Query: 139 ------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-LMV 188
                  +   P    +    V  + G+ +L+   +ED   +  +++ ++     V L  
Sbjct: 144 RLLKNKQIQKDPIIEALAAVSVGKVAGELLLDLAYEEDAKAEVDMNVVMTAGGRFVELQG 203

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             E      D +   +         +IEA ++     A
Sbjct: 204 TAEGTPFGRDELDAMLRLAEKGICELIEAQNQALAESA 241


>gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
 gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +  +R+I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V+D     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A+ G L ++ + 
Sbjct: 174 LDLNYAEDSQADVDMNVIMTGKGHFVEVQGTGEEATFSRAELNELLDAAENGILQLIEKQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 86/229 (37%), Gaps = 25/229 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + L T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RNIHLHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDED-QGSLD 175
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED Q  +D
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQGVVLDLNYAEDSQADVD 187

Query: 176 LFVSGT-QDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           + V  T +   + V+    + +     + + +    N    +IE   + 
Sbjct: 188 MNVIMTGKGHFVEVQGTGEEATFSRAELNELLDAAENGILQLIEKQKEA 236


>gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL]
 gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL]
          Length = 258

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 25/257 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             PI+  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S +     L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEVQ 232

Query: 536 SKVLSESRLQLGEFTPR 552
            +VL +   +L    P+
Sbjct: 233 KEVLGQ-DCELVGSVPK 248



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       +I  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDEKIIENFPITDFVAAVSVGICDGVEMLDLCFEEDSKAAVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++   + + +    E    S D     +  G    + +IE   ++
Sbjct: 188 NLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEVQKEV 235


>gi|315127898|ref|YP_004069901.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
           SM9913]
 gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
           SM9913]
          Length = 237

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R ++          GS L   G+T+ +   T+    +      + G  +
Sbjct: 1   MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATV----EAGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +   A    T+ I  
Sbjct: 57  GWVNAEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   +A I++G+         +
Sbjct: 117 DVIQADGGTRTASISGACVALVDALTYMRAKGMINSNPLKHMIAAISVGIY----KGQAI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S + +   L  AK     I++  
Sbjct: 173 SDLEYLEDSDAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+   T      ++G+VL  +G T VL T   +  +     GQ    +   Y     A 
Sbjct: 12  RPVTF-TRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVNAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
                       +     + I R+I RS+R     K    N   +  +V+Q D       
Sbjct: 71  -HTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL           M++  P +  +    V    GQ + +    ED   +  +
Sbjct: 128 ASISGACVALVDALTYMRAKGMINSNPLKHMIAAISVGIYKGQAISDLEYLEDSDAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++ T   ++ V+   E    S D + + +    +  + +I+   +   
Sbjct: 188 NVILTET-GKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|292486561|ref|YP_003529429.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|292897799|ref|YP_003537168.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291197647|emb|CBJ44742.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291551976|emb|CBA19013.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|312170622|emb|CBX78885.1| ribonuclease PH [Erwinia amylovora ATCC BAA-2158]
          Length = 238

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVFIGKLKANPMKGMVAAISVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ A+ G   ++   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 22/201 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNHLVFIGKLKANPMKGMVAAISVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE 197
            V  T+D  + +E++     E
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGE 207


>gi|319786148|ref|YP_004145623.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
 gi|317464660|gb|ADV26392.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
          Length = 241

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 87/239 (36%), Gaps = 16/239 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR  GR  + +R +  + G  +   GS L   GDT+ +   ++    D +    L G   
Sbjct: 4   VRPSGRAPDQLRPVRIERGFTRHAEGSVLVSFGDTRVLCTASI----DNKVPAFLRGKGE 59

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G    R +   RL  R +   + + A    T+ +  
Sbjct: 60  GWVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDC 119

Query: 428 EITESDGSSSMATVCGSSLALMD-------AGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           ++ ++DG +  A + G+ +AL+D        G     PV G    +       + + D+ 
Sbjct: 120 DVLQADGGTRTAAITGAYVALVDAVRWLQGRGEIKRDPVFGAVAAVSVGVYRGVPVLDLD 179

Query: 481 GDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             ED     D  V   D  G   +Q   +      + +   L  A+ G   +L    + 
Sbjct: 180 YAEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLALAETGIGQLLELQRQA 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++E G   R ++G+VL ++G+T VL T   D  +     G+    +T  Y     + 
Sbjct: 15  RPVRIERG-FTRHAEGSVLVSFGDTRVLCTASIDNKVPAFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+           +   P  G V    V    G  VL+    ED      +
Sbjct: 131 AAITGAYVALVDAVRWLQGRGEIKRDPVFGAVAAVSVGVYRGVPVLDLDYAEDSDCDTDM 190

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++     + L    E +    D +   +         ++E   +   
Sbjct: 191 NVVMNDGGGFIELQGTAEGHAFRRDELDALLALAETGIGQLLELQRQALA 240


>gi|237728940|ref|ZP_04559421.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|283787723|ref|YP_003367588.1| ribonuclease PH [Citrobacter rodentium ICC168]
 gi|226909562|gb|EEH95480.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|282951177|emb|CBG90870.1| ribonuclease PH [Citrobacter rodentium ICC168]
          Length = 238

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVASGKLKTNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL         SG     P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVASGKLKTNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|24638170|sp|Q8NMR4|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032]
 gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++    +         +   
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASV----ELGVPRFKRDSGEG 64

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E +R     G    R     RL  R++   +  +     T+ I  +
Sbjct: 65  WLTAEYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  PVA +++GLV    D  +  
Sbjct: 125 VLQADGGTRTASITGAYVALADAIKVLQERGVVPGSPLLAPVAAVSVGLV----DGNVCL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  V  T+ G    +Q   +    +   +   L  A++G   ++    
Sbjct: 181 DLPYEEDSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDHAEKGCRELVAAQK 240

Query: 537 KV 538
             
Sbjct: 241 AA 242



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 29/214 (13%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE---S 82
           G+VL  +G T V+ T  V     +  +D     LT  Y     A  +      RRE    
Sbjct: 33  GSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTAEYAMLPAATAE----RNRRESMAG 88

Query: 83  RPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           +       ISR+I RS+R      +  +N   +  +V+Q D        S+  A  AL  
Sbjct: 89  KVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQADGG--TRTASITGAYVALAD 146

Query: 141 S-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDA-VLM 187
           +           G P   PV    V  ++G   L+ P  ++ +  +DL V  T+    + 
Sbjct: 147 AIKVLQERGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEEDSRADVDLNVVMTEHGEFVE 206

Query: 188 VELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           ++    +   +   + D +      C+ ++ A  
Sbjct: 207 IQGTGEETTFTRAQLNDMLDHAEKGCRELVAAQK 240


>gi|228954763|ref|ZP_04116785.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|107124175|gb|ABF83610.1| Rph [Bacillus thuringiensis serovar kurstaki]
 gi|228804961|gb|EEM51558.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQVEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQVEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEA 236


>gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642]
 gi|75503908|sp|Q4ZZY6|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|63254190|gb|AAY35286.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
 gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
 gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
 gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 240

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   +   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L++ ++ +    + V+  A       + +   +         + E  
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQ 234


>gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|61216049|sp|Q88BE0|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 240

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   +   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEM 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ +    + V+  A       + +   +         + E        
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240


>gi|219871463|ref|YP_002475838.1| ribonuclease PH [Haemophilus parasuis SH0165]
 gi|254808589|sp|B8F6D8|RNPH_HAEPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219691667|gb|ACL32890.1| ribonuclease PH [Haemophilus parasuis SH0165]
          Length = 244

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 99/252 (39%), Gaps = 24/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  +  R +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGACVALHDAINKLIADGLLKENPMKGLVAAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A++G   +    
Sbjct: 173 CDLEYVEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQ 232

Query: 536 SKVLSESRLQLG 547
            + L+ +   + 
Sbjct: 233 RQALNATSDAIR 244



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     A 
Sbjct: 12  RPVKI-TRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +      +   +     + I R+I RS+R +       E    V  +V+Q D      
Sbjct: 71  HSRTQREAAK--GKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLD 175
             S+  A  AL            L   P +G V    V  ++GQ V +    ++     D
Sbjct: 127 TASITGACVALHDAINKLIADGLLKENPMKGLVAAISVGIVDGQAVCDLEYVEDSNAETD 186

Query: 176 LFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKL 221
           + V   +D  L VE++     E      +L  +       + + EA  + 
Sbjct: 187 MNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQA 235


>gi|253991850|ref|YP_003043206.1| ribonuclease PH [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253783300|emb|CAQ86465.1| ribonuclease ph [Photorhabdus asymbiotica]
          Length = 237

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +E VR I+      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V +       
Sbjct: 117 DVIQADGGTRTASITGACVALVDALNKMVEAGKLKENPLKSMVAAVSVGIVDNEGR---- 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S + ++  L  AK G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLSLAKGGLETIFAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 RTA 235



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     + 
Sbjct: 12  RPITI-TRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                    R  +     + I R+I RS+R      K  +    +  +V+Q D       
Sbjct: 71  HSRNAREAAR-GKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+           L   P +  V    V  ++ +   +    ED   +  +
Sbjct: 128 ASITGACVALVDALNKMVEAGKLKENPLKSMVAAVSVGIVDNEGRCDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ +      ++ V+   E    S D +L  +       + +  A     K
Sbjct: 188 NVVM-MEDGRMIEVQGTAEGEPFSHDELLSLLSLAKGGLETIFAAQRTALK 237


>gi|167854865|ref|ZP_02477642.1| ribonuclease PH [Haemophilus parasuis 29755]
 gi|167854044|gb|EDS25281.1| ribonuclease PH [Haemophilus parasuis 29755]
          Length = 244

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 99/252 (39%), Gaps = 24/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  +  R +       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATV----EETVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGACVALHDAINKLIADGLLKENPMKGLVAAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A++G   +    
Sbjct: 173 CDLEYVEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQ 232

Query: 536 SKVLSESRLQLG 547
            + L+ +   + 
Sbjct: 233 RQALNATSDVIR 244



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + ++     GQ    +T  Y     A 
Sbjct: 12  RPVKI-TRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVTAEYGMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +      +   +     + I R+I RS+R +       E    V  +V+Q D      
Sbjct: 71  HSRTQREAAK--GKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLD 175
             S+  A  AL            L   P +G V    V  ++GQ V +    ++     D
Sbjct: 127 TASITGACVALHDAINKLIADGLLKENPMKGLVAAISVGIVDGQAVCDLEYVEDSNAETD 186

Query: 176 LFVSGTQDAVLMVELEANQLSED----VVLDAIIFGHNECKPVIEAISKL 221
           + V   +D  L VE++     E      +L  +       + + EA  + 
Sbjct: 187 MNVVMVEDGRL-VEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQA 235


>gi|259906754|ref|YP_002647110.1| ribonuclease PH [Erwinia pyrifoliae Ep1/96]
 gi|224962376|emb|CAX53831.1| Ribonuclease PH (TRNA nucleotidyltransferase) [Erwinia pyrifoliae
           Ep1/96]
 gi|283476540|emb|CAY72368.1| ribonuclease PH [Erwinia pyrifoliae DSM 12163]
 gi|310765964|gb|ADP10914.1| ribonuclease PH [Erwinia sp. Ejp617]
          Length = 238

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVSIGKLKANPMKGMVAAISVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ A+ G   ++   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 22/201 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNHLVSIGKLKANPMKGMVAAISVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE 197
            V  T+D  + +E++     E
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGE 207


>gi|170698512|ref|ZP_02889583.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
 gi|170136596|gb|EDT04853.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
          Length = 246

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFLRDRGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     + + L 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVY----EGVPLL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGQLVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 21/214 (9%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV- 185
           A S   AA  L+  P    V    V    G  +L+    ED      +++ ++G    V 
Sbjct: 145 AVSKLIAAGKLARSPITDHVAAISVGVYEGVPLLDLDYAEDSRCDTDMNVVMTGAGGFVE 204

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +    E    S   +   +    +    +++   
Sbjct: 205 VQGTAEGAPFSRAEMNALLDLAQSGIGQLVQLQK 238


>gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium]
          Length = 242

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR    +R I+     L+ T GS+L   G+T+ I   TL    +++    L  T R 
Sbjct: 4   RSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICAATL----EDKSAPFLKNTGRG 59

Query: 373 DFMMHYNFLPCATGEVSR----MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T   +      G    R     RL  R++  V    +    T+ +  +
Sbjct: 60  WVTAEYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +AL++             +P++  V+ I++G++++     IL 
Sbjct: 120 VIQADGGTRTASITGGFIALVELLKKMKADGIVKEIPVNDYVSAISVGIIENK----ILL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D     T SG    +Q   +     +N M      A +G   ++    
Sbjct: 176 DLEYEEDSKADVDMNFVMTGSGKFIEVQGTAEHVPFDKNQMHEMTTLAGQGIEELIALQK 235

Query: 537 KV 538
           K+
Sbjct: 236 KI 237



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 28/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T    + + G+ L  +G T V+     +              +T  Y     + 
Sbjct: 14  RPINI-TNNFLKTTAGSALVEFGNTKVICAATLEDKSAPFLKNTGRGWVTAEYSMLPAST 72

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             + P    R   +       I R+I RS+R +   +   +    +  +V+Q D      
Sbjct: 73  QTRTPRESTR--GKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCDVIQADGG--TR 128

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+     AL+           +  +P    V    V  I  + +L+   +ED      
Sbjct: 129 TASITGGFIALVELLKKMKADGIVKEIPVNDYVSAISVGIIENKILLDLEYEEDSKADVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLA 222
           ++  ++G+    + V+  A  +   ++ + +         + +I    K+ 
Sbjct: 189 MNFVMTGS-GKFIEVQGTAEHVPFDKNQMHEMTTLAGQGIEELIALQKKIV 238


>gi|322835049|ref|YP_004215076.1| ribonuclease PH [Rahnella sp. Y9602]
 gi|321170250|gb|ADW75949.1| ribonuclease PH [Rahnella sp. Y9602]
          Length = 238

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRNAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNALVAAGKLKANPMKGMVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLGLLALARGGIDTIFQAQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL-----E 123
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTAS 129

Query: 124 SSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS 179
            S   V++  A  AL+ +G     P +G V    V  + G+ + +    ED        +
Sbjct: 130 ISGACVALADALNALVAAGKLKANPMKGMVAAVSVGIVKGEALCDLEYVEDSA------A 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
            T   V+M+E +   +      +   F H E
Sbjct: 184 ETDMNVVMME-DGRMIEVQGTAEGEPFSHEE 213


>gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R]
 gi|166228277|sp|A4QGQ6|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 245

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++    +         +   
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASV----ELGVPRFKRDSGEG 64

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E +R     G    R     RL  R++   +  +     T+ I  +
Sbjct: 65  WLTAEYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL DA           G P+  PVA +++GLV    D  +  
Sbjct: 125 VLQADGGTRTASITGAYVALADAIKVLQERGVVPGSPLLAPVAAVSVGLV----DGNVCL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  V  T+ G    +Q   +    +   +   L  A++G   ++    
Sbjct: 181 DLPYEEDSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDYAEKGCRELVAAQK 240

Query: 537 KV 538
             
Sbjct: 241 AA 242



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 29/214 (13%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE---S 82
           G+VL  +G T V+ T  V     +  +D     LT  Y     A  +      RRE    
Sbjct: 33  GSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTAEYAMLPAATAE----RNRRESMAG 88

Query: 83  RPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           +       ISR+I RS+R      +  +N   +  +V+Q D        S+  A  AL  
Sbjct: 89  KVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQADGG--TRTASITGAYVALAD 146

Query: 141 S-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDA-VLM 187
           +           G P   PV    V  ++G   L+ P  ++ +  +DL V  T+    + 
Sbjct: 147 AIKVLQERGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEEDSRADVDLNVVMTEHGEFVE 206

Query: 188 VELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           ++    +   +   + D + +    C+ ++ A  
Sbjct: 207 IQGTGEETTFTRAQLNDMLDYAEKGCRELVAAQK 240


>gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R126a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +      G    R     R+  RA+   +  T     T+ +  
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG ++ A + G+ +A+ DA +           PI   VA +++G+V D     IL
Sbjct: 117 DVIQADGGTATAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVND----RIL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V GT SG ++ +    +    +++ ++  L  A++G   ++   
Sbjct: 173 LDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQ 232

Query: 536 SKVL 539
            K+ 
Sbjct: 233 KKLY 236



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 23/213 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+ L ++G+T V+ T     ++ +   G+    +T  Y     A  +        + R  
Sbjct: 26  GSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRAT-QQRTIRESVQGRIG 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                I RMI R++R         E    V  +V+Q D  ++    ++  A  A+  + +
Sbjct: 85  GRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTA--TAAITGAFVAVADAII 142

Query: 144 -----------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA---VLMV 188
                      P +  V    V  +N + +L+   +ED    +D+ V GT       +  
Sbjct: 143 KLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHT 202

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             E    ++D ++  +         +IE   KL
Sbjct: 203 MGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298484821|ref|ZP_07002921.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 240

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   +   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L++ ++ +    + V+  A       + +   +         + E  
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFELQ 234


>gi|323489951|ref|ZP_08095172.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
 gi|323396247|gb|EGA89072.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
          Length = 249

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 103/251 (41%), Gaps = 19/251 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R +  +R ++  V  L    GS L   G T+ I   T+    +++    L G  + 
Sbjct: 3   RIDNRQTNELRPVTVDVEYLIHPEGSVLITVGQTKVICTATI----EDKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   +R     G    R +   RL  RA+  V+        TL I  +
Sbjct: 59  WITAEYSMLPRATNSRNRREASAGKIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-MDAG------VPISKPVAGIAMGLVKDGDDFIILSDISG 481
           + ++DG +  A++ G+ +A+ M  G       P++  +A  ++G+  +      + D++ 
Sbjct: 119 VIQADGGTRTASITGAFIAMTMAIGKLELPDFPVTDFLAATSVGVTAENGP---ILDLNY 175

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED    +D  +  T +G    +Q   +    +   +   L   + G   ++      L 
Sbjct: 176 VEDSSAEVDMNLVMTGAGHFVELQGTGEESTFTRAQLNELLDLGEAGIRQLIAMQQDALG 235

Query: 541 ESRLQLGEFTP 551
           E   ++GE  P
Sbjct: 236 ELAERIGERVP 246



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 32/224 (14%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE---S 82
           G+VL T G+T V+ T   +  +     GQ    +T  Y     A         RRE    
Sbjct: 27  GSVLITVGQTKVICTATIEDKVPGFLRGQGKGWITAEYSMLPRATN----SRNRREASAG 82

Query: 83  RPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           +     + I R+I R++R +    K  +    +  +V+Q D        S+  A  A+ +
Sbjct: 83  KIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCDVIQADGG--TRTASITGAFIAMTM 140

Query: 141 S-------GLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVE 189
           +         P    +    V        +L+    ED      ++L ++G    V  ++
Sbjct: 141 AIGKLELPDFPVTDFLAATSVGVTAENGPILDLNYVEDSSAEVDMNLVMTGAGHFV-ELQ 199

Query: 190 LEANQ--LSEDVVLDAIIFGHNECKPVIEAIS----KLAKMCAK 227
               +   +   + + +  G    + +I        +LA+   +
Sbjct: 200 GTGEESTFTRAQLNELLDLGEAGIRQLIAMQQDALGELAERIGE 243


>gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6]
 gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6]
          Length = 240

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL+D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFAL 233

Query: 535 MSKVLSE 541
            +  L++
Sbjct: 234 QNAALAD 240



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL+ +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ T   +  V+  A         +   +         +    +     
Sbjct: 189 LNVVMTSTGGFI-EVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQNAALAD 240


>gi|241202761|ref|YP_002973857.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856651|gb|ACS54318.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +    +   GS L   GDT  +   +L    +E+    L  T +
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EEKTPPWLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  +     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL D                +   VA I+ G+         
Sbjct: 117 DVIQADGGTRTASITGGWIALYDCLKWMESRNMIKVERVLKDHVAAISCGIFASQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T   GI  +Q   +    SE      +Q A+ G   ++  
Sbjct: 173 VIDLDYIEDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVAL 232

Query: 535 MSKVLS 540
             + + 
Sbjct: 233 QKQAVE 238



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     A 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G+     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GER----MKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML--------SGLPFE----GPVVGAQVDYINGQYVLNPRLDED--- 170
               S+     AL          + +  E      V          Q V++    ED   
Sbjct: 125 TRTASITGGWIALYDCLKWMESRNMIKVERVLKDHVAAISCGIFASQPVIDLDYIEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++GT   ++ ++   E    SE      +    N    ++    +  +
Sbjct: 185 ETDANFVMTGT-GGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVE 238


>gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13]
 gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40]
 gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 240

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A  ++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAASVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   +   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEM 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +  A V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L++ ++ +    + V+  A       + +   +         + E  
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQ 234


>gi|291619462|ref|YP_003522204.1| Rph [Pantoea ananatis LMG 20103]
 gi|291154492|gb|ADD79076.1| Rph [Pantoea ananatis LMG 20103]
 gi|327395785|dbj|BAK13207.1| ribonuclease Rph [Pantoea ananatis AJ13355]
          Length = 238

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   G+T+ +   T+    DE     L G  +
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVASGKLKANPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   ++   
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIEELIQAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALEK 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +GET VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             ++     +   +     + I R+I RS+R         E  +    +V+Q D      
Sbjct: 71  HSRMAREAAK--GKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL         SG     P +G V    V  +NG+ + +    ED   +  
Sbjct: 127 TASITGACVALADALNKLVASGKLKANPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETD 186

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ +      ++ V+   E    S + +L  +       + +I+A     + 
Sbjct: 187 MNVVM-MEDGRMIEVQGTAEGEPFSHEELLALLALARGGIEELIQAQKAALEK 238


>gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  AK+G   +   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ ++   + ++  A       + +   +         + E        
Sbjct: 189 LNVVMT-SEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFELQRAALAD 240


>gi|221135142|ref|ZP_03561445.1| RNase PH (tRNA nucleotidyltransferase) [Glaciecola sp. HTCC2999]
          Length = 238

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ I   T+    +E     + G   
Sbjct: 1   MRPSGRTANQIRPVTITRHFTCHAEGSVLVEFGNTKVICNATV----EEGVPRFMKGKGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYSMLPRATHSRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTHMRSKGILKANPLKHMIAALSVGVYKGN----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  V  T++G +  +Q   +    S   M   L  AK G   + +  
Sbjct: 173 ADLEYLEDSDAETDMNVVMTETGKLIEVQGTAEGEPFSFEEMSEMLDLAKHGLRELFDIQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KTALN 237



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+ + T      ++G+VL  +G T V+     +    +G   F        +T  Y   
Sbjct: 12  RPVTI-TRHFTCHAEGSVLVEFGNTKVICNATVE----EGVPRFMKGKGEGWITAEYSML 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
             A     G    R  +     + I R+I RS+R         E  +    +V+Q D   
Sbjct: 67  PRATHSRSGREAAR-GKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                S+  A  AL+ +       G+    P +  +    V    G  + +    ED   
Sbjct: 125 -TRTASITGACVALVDALTHMRSKGILKANPLKHMIAALSVGVYKGNAIADLEYLEDSDA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +  +++ ++ T   + +    E    S + + + +    +  + + +   
Sbjct: 184 ETDMNVVMTETGKLIEVQGTAEGEPFSFEEMSEMLDLAKHGLRELFDIQK 233


>gi|56461525|ref|YP_156806.1| RNase PH [Idiomarina loihiensis L2TR]
 gi|61215805|sp|Q5QYL5|RNPH_IDILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56180535|gb|AAV83257.1| RNase PH [Idiomarina loihiensis L2TR]
          Length = 237

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   GS L   G+T+ +   ++    +      L G  +
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASV----ERGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R +   RL  R++   +  +A   +T+ I  
Sbjct: 57  GWVTAEYSMLPRATHTRSAREASRGKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+ + VA I++G++    D   +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALNWMRAQGMVKVNPLKEMVAAISVGIL----DGEPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  +  T++G    +Q   +    S + M   ++ A+     +++  
Sbjct: 173 SDLEYIEDSKADTDMNIVMTEAGKFIEIQGTAEGEAFSFDEMNSLVEMARHSIRELIDIQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +GET VL     +R +     G+    +T  Y     A 
Sbjct: 12  RPVTI-TRNFTKHAEGSVLIEFGETKVLCNASVERGVPRFLKGKGQGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       +     + I R+I RS+R         E    +  +V+Q D       
Sbjct: 71  -HTRSAREASRGKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL   L+ +         P +  V    V  ++G+ V +    ++ +   D+
Sbjct: 128 ASITGACVALVDALNWMRAQGMVKVNPLKEMVAAISVGILDGEPVSDLEYIEDSKADTDM 187

Query: 177 FVSGTQ-DAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +  T+    + ++   E    S D +   +    +  + +I+   +   
Sbjct: 188 NIVMTEAGKFIEIQGTAEGEAFSFDEMNSLVEMARHSIRELIDIQKQALA 237


>gi|304413132|ref|ZP_07394605.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
 gi|304283975|gb|EFL92368.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
          Length = 242

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+ GR +E VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRLAGRAAEQVRPLTLTRHYTKYAEGSVLVEFGDTKVLCTATI----EEGIPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ I  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+S+AL DA             P+   VA I++G+VK+      L
Sbjct: 117 DVLQADGGTRTAAISGASVALADALEKAVIKKKLKKNPMRGLVAAISVGIVKNE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   +   +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 GDLEYTEDANAETDMNVVMMEDYQMIEVQGTAEGKPFSHEQLLTLLALARGGIGTIFQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RPL L T    + ++G+VL  +G+T VL T   +    +G   F        +T  Y   
Sbjct: 12  RPLTL-TRHYTKYAEGSVLVEFGDTKVLCTATIE----EGIPRFLKGKGQGWITAEYGML 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
             +           + +     + I R+I RS+R         E    +  +V+Q D   
Sbjct: 67  PRST-HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDCDVLQADGG- 124

Query: 125 SPHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                ++  AS AL  +             P  G V    V  +  + + +    ED   
Sbjct: 125 -TRTAAISGASVALADALEKAVIKKKLKKNPMRGLVAAISVGIVKNEALGDLEYTEDANA 183

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +  +++ +      ++ V+   E    S + +L  +         + +A      
Sbjct: 184 ETDMNVVM-MEDYQMIEVQGTAEGKPFSHEQLLTLLALARGGIGTIFQAQKAALA 237


>gi|295677344|ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002]
 gi|295437187|gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002]
          Length = 245

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR    +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MSNDTHRPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASV----SESVPPFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A++ G+ +A  D              PI+  VA I++G+     
Sbjct: 117 INLDCDVIQADGGTRTASITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S   M   L  A  G   
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGIST 232

Query: 531 ILNEMSKV 538
           ++ +  + 
Sbjct: 233 LIAKQKEA 240



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 22/227 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     S+      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASVSESVPPFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTINLDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A +  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVYDGVPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
            ++G     + ++  A  +  S + +   +    +    +I    + 
Sbjct: 195 VMTG-AGGFVEIQGTAEGVPFSREEMNALLDLASDGISTLIAKQKEA 240


>gi|110643884|ref|YP_671614.1| ribonuclease PH [Escherichia coli 536]
 gi|191170501|ref|ZP_03032054.1| ribonuclease PH [Escherichia coli F11]
 gi|300983477|ref|ZP_07176624.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|306816009|ref|ZP_07450147.1| ribonuclease PH [Escherichia coli NC101]
 gi|123048705|sp|Q0TBG6|RNPH_ECOL5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110345476|gb|ABG71713.1| ribonuclease PH [Escherichia coli 536]
 gi|190909309|gb|EDV68895.1| ribonuclease PH [Escherichia coli F11]
 gi|300306941|gb|EFJ61461.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|305850405|gb|EFM50862.1| ribonuclease PH [Escherichia coli NC101]
 gi|324012723|gb|EGB81942.1| ribonuclease PH [Escherichia coli MS 60-1]
          Length = 238

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVVTQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9]
 gi|254808590|sp|C1DCK5|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9]
          Length = 238

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +       +   GS L   GDT+ I   T+    +E     L G  +
Sbjct: 1   MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATV----EESVPGFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G  S R     RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V    D   +
Sbjct: 117 DVIQADGGTRTASISGAWVALADAIDGLMAKGLLTENPLRDHVAAVSVGMV----DGQPV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G   +Q   +    S   M   L  A  G   I+   
Sbjct: 173 LDLDYTEDSGCDTDMNVVMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQ 232

Query: 536 SKVL 539
               
Sbjct: 233 QAAR 236



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 91/234 (38%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP++       R ++G+VL  +G+T V+ T   + S+     G+    +T  Y     + 
Sbjct: 12  RPVRF-IRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 71  ----HSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+  A  AL            L+  P    V    V  ++GQ VL+    ED G  
Sbjct: 125 TRTASISGAWVALADAIDGLMAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYTEDSGCD 184

Query: 173 -SLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
             +++ ++G Q   + ++  A  +  S + +   +       + ++       +
Sbjct: 185 TDMNVVMTG-QGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQAARQ 237


>gi|87121112|ref|ZP_01077003.1| ribonuclease PH [Marinomonas sp. MED121]
 gi|86163604|gb|EAQ64878.1| ribonuclease PH [Marinomonas sp. MED121]
          Length = 239

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +RD+       +   GS L   GDT+ I   TL           L G  +
Sbjct: 1   MRPSGRAVDQLRDLKITRNFTKHAEGSVLIECGDTKVICTATLVPG----VPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +  G  + R +   RL  R++   +       +T+ I  
Sbjct: 57  GWITAEYGMLPRSTHSRVDREAARGKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL D              PI   +A I++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGGFVALADAVKKLVERKKIKENPIVSQIAAISVGVYKGEP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D  G   +Q   +    S+  M+  L+ A++G   IL   
Sbjct: 173 LDLDYPEDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 RDA 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 33/219 (15%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGY 77
           + ++G+VL   G+T V+ T      L  G   F        +T  Y     +        
Sbjct: 22  KHAEGSVLIECGDTKVICTAT----LVPGVPRFLKGKGQGWITAEYGMLPRSTHSRVDRE 77

Query: 78  LRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
             R  + T   + I R+I RS+R      K  ++   +  +V+Q D        S+    
Sbjct: 78  AAR-GKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITIDCDVIQADGG--TRTASITGGF 134

Query: 136 AALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGT 181
            AL            +   P    +    V    G+ VL+   P     +  ++  +   
Sbjct: 135 VALADAVKKLVERKKIKENPIVSQIAAISVGVYKGEPVLDLDYPEDSNAETDMN-VIMND 193

Query: 182 QDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +   + ++   E    S++ ++  +         +++A 
Sbjct: 194 KGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQAQ 232


>gi|307268764|ref|ZP_07550132.1| ribonuclease PH [Enterococcus faecalis TX4248]
 gi|306514892|gb|EFM83439.1| ribonuclease PH [Enterococcus faecalis TX4248]
          Length = 451

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 135/360 (37%), Gaps = 50/360 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGAGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    +    G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFDEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++ G     ++ L     A  +                + V   D G  V   G   G+
Sbjct: 292 VEETGRTFEENARLKAETIAEILQ---------------KPVLADDSGLIVDALGGMPGI 336



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|228923234|ref|ZP_04086524.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836440|gb|EEM81791.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 245

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            +VL +    + 
Sbjct: 234 KEVLGDIVSHIE 245



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 86/230 (37%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   ++
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEV 236


>gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 240

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   +   
Sbjct: 174 VLDLDYPEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEL 233

Query: 535 MSKVLSE 541
               L++
Sbjct: 234 QRAALAD 240



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 27/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGS 173
            S+  A  AL  +            G P +  +    V    G+ VL+   P     +  
Sbjct: 129 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           L++ ++ +    + V+  A       + +   +         + E  
Sbjct: 189 LNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQ 234


>gi|296134058|ref|YP_003641305.1| ribonuclease PH [Thermincola sp. JR]
 gi|296032636|gb|ADG83404.1| ribonuclease PH [Thermincola potens JR]
          Length = 239

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R +      ++   GS L   GDT+ I   T+    +++    + G  + 
Sbjct: 3   RNDGRANDQLRPVKITRHYIKHAEGSVLIEMGDTKVICTATV----EDKVPPFMKGEGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +           G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WITAEYGMLPRSAATRIPREAAKGKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+D              P+   +A +++G V       IL 
Sbjct: 119 VIQADGGTRTASITGAFVALVDALRHQVDQGVLEKFPVLDYMAAVSVGKVNGE----ILL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED +  +D  V  T  G    +Q   +        +   L+ A +G   ++    
Sbjct: 175 DLAFSEDSVAEVDMNVVMTRGGKFLEVQGTAEGSPFDREELEKFLEMAGKGIQQLIQAQM 234

Query: 537 KVLSE 541
           +VL E
Sbjct: 235 EVLGE 239



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 13  RPVKI-TRHYIKHAEGSVLIEMGDTKVICTATVEDKVPPFMKGEGKGWITAEYGMLPRSA 71

Query: 71  G-KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +IP    +   +       I R+I RS+R +       E    V  +V+Q D      
Sbjct: 72  ATRIPREAAK--GKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCDVIQADGG--TR 127

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL           +L   P    +    V  +NG+ +L+    ED   +  
Sbjct: 128 TASITGAFVALVDALRHQVDQGVLEKFPVLDYMAAVSVGKVNGEILLDLAFSEDSVAEVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++      L V+  A       + +   +       + +I+A  ++
Sbjct: 188 MNVVMT-RGGKFLEVQGTAEGSPFDREELEKFLEMAGKGIQQLIQAQMEV 236


>gi|237806963|ref|YP_002891403.1| ribonuclease PH [Tolumonas auensis DSM 9187]
 gi|259494130|sp|C4L818|RNPH_TOLAT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237499224|gb|ACQ91817.1| ribonuclease PH [Tolumonas auensis DSM 9187]
          Length = 237

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 24/227 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E +R I+          GS L   G T+ +   T+     E     L G  +
Sbjct: 1   MRPSGRTPEQLRPITITRQYTCHAEGSVLVEFGRTKVLCTATVT----EGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +  T     T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMHREAASGKQGGRTLEIQRLIARSLRAAVDLTKLGENTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P++  VA +++G+     +   +
Sbjct: 117 DVLQADGGTRTASITGACVALADALNWMLAKGSLKTNPLNFMVAAVSVGIY----EGAPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQ 522
            D+  DED     D  +  T++G +  +Q   +    S+  ++  L+
Sbjct: 173 CDLDYDEDSSAETDMNLVMTETGKMIEIQGTAEGEPFSQEELMQLLE 219



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 24/214 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T VL T      +     G+    +T  Y     + 
Sbjct: 12  RPITI-TRQYTCHAEGSVLVEFGRTKVLCTATVTEGVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       +     + I R+I RS+R     +K  +N   V  +V+Q D       
Sbjct: 71  -HSRMHREAASGKQGGRTLEIQRLIARSLRAAVDLTKLGENTITVDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            L   P    V    V    G  V +   DED   +  +
Sbjct: 128 ASITGACVALADALNWMLAKGSLKTNPLNFMVAAVSVGIYEGAPVCDLDYDEDSSAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFG 207
           +L ++ T   + +    E    S++ ++  +  G
Sbjct: 188 NLVMTETGKMIEIQGTAEGEPFSQEELMQLLELG 221


>gi|288553636|ref|YP_003425571.1| ribonuclease PH [Bacillus pseudofirmus OF4]
 gi|288544796|gb|ADC48679.1| ribonuclease PH [Bacillus pseudofirmus OF4]
          Length = 251

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 23/254 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +      L+   GS L   GDT+ I   ++    +E+    + G  +
Sbjct: 1   MRSDGRQVNELRAVQLDTDYLKHPEGSVLISMGDTKVICTASI----EERVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  R++  +L        T+ I  
Sbjct: 57  GWITAEYSMLPRATEQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL           +    PI   +A +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAFVALSIAVNKAVERGLIKSWPIKDYLAAVSVGVEPTHGE---V 173

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T       +Q   +    S   +   L  A+ G   +++  
Sbjct: 174 LDLCYVEDAAAEVDMNVIMTGAHQFVELQGTGEEATFSREQLNQLLDLAEHGIDELISHQ 233

Query: 536 SKVLSESRLQLGEF 549
              L E   ++  +
Sbjct: 234 KAALGEISEKIDTY 247



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 30/246 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R ++L+T  + +  +G+VL + G+T V+ T   +  +     GQ    +T  Y     A 
Sbjct: 12  RAVQLDTDYL-KHPEGSVLISMGDTKVICTASIEERVPPFMRGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYIN--GQYVLNPRLDED---QG 172
            S+  A  AL ++             P +  +    V      G+ VL+    ED   + 
Sbjct: 128 ASITGAFVALSIAVNKAVERGLIKSWPIKDYLAAVSVGVEPTHGE-VLDLCYVEDAAAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
            +++ ++G    V  ++    + +   + +   +    +    +I          + E I
Sbjct: 187 DMNVIMTGAHQFV-ELQGTGEEATFSREQLNQLLDLAEHGIDELISHQKAALGEIS-EKI 244

Query: 231 VIDSKD 236
               KD
Sbjct: 245 DTYKKD 250


>gi|117617491|ref|YP_858647.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117558898|gb|ABK35846.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 257

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +  +R ++      +   GS L   G+T+ +   ++ T         L G  + 
Sbjct: 22  RPSDRTAAQLRPVTITRHFTKHAEGSVLVEFGNTRVLCTASVDTS----VPRFLKGKNQG 77

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T          G  S R +   RL  R++   +  TA   +++ +  +
Sbjct: 78  WVTAEYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCD 137

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+D              P+ + +A +++G+ +       + 
Sbjct: 138 VLQADGGTRTAAITGACVALVDALNWMVEKGMLKQSPLKQMIAAVSVGMYQGE----AIC 193

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T+ G I  +Q   +    +   ++  L  AK G   I+    
Sbjct: 194 DLEYIEDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQK 253

Query: 537 K 537
           +
Sbjct: 254 Q 254



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G T VL T   D S+     G++   +T  Y     + 
Sbjct: 32  RPVTI-TRHFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTAEYGMLPRST 90

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +   + ISR+I RS+R         E    V  +V+Q D       
Sbjct: 91  -HSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQADGG--TRT 147

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            ++  A  AL           ML   P +  +    V    G+ + +    ++     D+
Sbjct: 148 AAITGACVALVDALNWMVEKGMLKQSPLKQMIAAVSVGMYQGEAICDLEYIEDSAAETDM 207

Query: 177 FVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            V  T+D  ++ V+   EA   + + +L+ +         +I    +
Sbjct: 208 NVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQ 254


>gi|222528843|ref|YP_002572725.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
 gi|254808576|sp|B9MQJ8|RNPH_ANATD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|222455690|gb|ACM59952.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
          Length = 258

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 102/257 (39%), Gaps = 25/257 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             P++  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S       L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQ 232

Query: 536 SKVLSESRLQLGEFTPR 552
            +VL +   +L    P+
Sbjct: 233 KEVLGQ-DCELVGSVPK 248



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       +I  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVEMLDLCFEEDSKAAVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++   + + +    E    S +     +  G    + +IE   ++
Sbjct: 188 NLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEV 235


>gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 235

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 19/238 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +   V  ++   GS L   GDT+ I   ++    +E+    L GT +
Sbjct: 2   IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASV----EEKIPPFLKGTGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R     RL  R++   +  TA    T+ I  
Sbjct: 58  GWITAEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDC 117

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++ ++DG +  A++ G+ +AL      +D    +   VA +++G+V  G ++  L D++ 
Sbjct: 118 DVIQADGGTRTASITGAFVALYRALEKIDKLDAVKNFVAAVSVGIV--GGEY--LLDLNY 173

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +ED +  +D  +   D G    +Q   +    S   +   L   ++G   ++ +  ++
Sbjct: 174 EEDSIAEVDMNIVMNDVGEFVELQGTAEGKPFSRKDLEKLLSLGEKGITKLILKQKEI 231



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L  +G+T V+ T   +  +     G     +T  Y     A 
Sbjct: 13  RPVKITVDYI-KHAEGSCLIEFGDTKVICTASVEEKIPPFLKGTGQGWITAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
                     + R T     I R+I RS+R         E    +  +V+Q D       
Sbjct: 72  A-TRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLSGLPFEGP------VVGAQVDYINGQYVLNPRLDED---QGSLDLFVS 179
            S+  A  AL  +    +        V    V  + G+Y+L+   +ED   +  +++ ++
Sbjct: 129 ASITGAFVALYRALEKIDKLDAVKNFVAAVSVGIVGGEYLLDLNYEEDSIAEVDMNIVMN 188

Query: 180 GTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
              + V L    E    S   +   +  G      +I    ++
Sbjct: 189 DVGEFVELQGTAEGKPFSRKDLEKLLSLGEKGITKLILKQKEI 231


>gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           T125a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +      G    R     R+  RA+   +  T     T+ +  
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A+ DA +           PI   VA +++G+V D     IL
Sbjct: 117 DVIQADGGARTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVND----RIL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V GT SG ++ +    +    +++ ++  L  A++G   ++   
Sbjct: 173 LDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQ 232

Query: 536 SKVL 539
            K+ 
Sbjct: 233 KKLY 236



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 23/213 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+ L ++G+T V+ T     ++ +   G+    +T  Y     A  +        + R  
Sbjct: 26  GSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRAT-QQRTIRESVQGRIG 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                I RMI R++R         E    V  +V+Q D        ++  A  A+  + +
Sbjct: 85  GRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGG--ARTAAITGAFVAVADAII 142

Query: 144 -----------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA---VLMV 188
                      P +  V    V  +N + +L+   +ED    +D+ V GT       +  
Sbjct: 143 KLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHT 202

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             E    ++D ++  +         +IE   KL
Sbjct: 203 MGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|312622868|ref|YP_004024481.1| ribonuclease ph [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203335|gb|ADQ46662.1| ribonuclease PH [Caldicellulosiruptor kronotskyensis 2002]
          Length = 258

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R    +R I      ++   GS L   G+T+ IV  T+    D++      G+  
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +         S R     RL  RA+   +   A     + I  
Sbjct: 57  GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ DA             P++  VA +++G+     D + +
Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGIC----DGVEM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   D G    +Q   +    S +     L+  K+G   I+   
Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQ 232

Query: 536 SKVLSE 541
            +VL E
Sbjct: 233 REVLGE 238



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+    I + ++G+ L   G T V+ T   D  +     G     +T  Y     A 
Sbjct: 12  RPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
            +     + +  R +     I R+I R++R   + K       +I  +V+Q D       
Sbjct: 71  QQRNVRDINK-LRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     A+            +   P    V    V   +G  +L+   +ED      +
Sbjct: 128 ASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVEMLDLCFEEDSKAAVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++   + + +    E    S D     +  G    + +IE   ++
Sbjct: 188 NLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQREV 235


>gi|315645714|ref|ZP_07898838.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
 gi|315279192|gb|EFU42502.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
          Length = 252

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR S+ +R ++    + +   GS     GDT+ ++  T+    DE+    L G  +
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATV----DEKVPPFLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWVTAEYSMLPRATQSRNQREANRGKLTGRTMEIQRLIGRALRSVVNLYALGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL             A  PI+  +A I++G+         L
Sbjct: 117 DVIQADGGTRTTSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIA----GGQAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T  G    +Q   +    S   +   L+  ++G   ++   
Sbjct: 173 LDLNYEEDSKAKVDMNLVMTGGGKFVEVQGTGEESPFSREELDQILELGEKGIRELIERQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ L T  + + ++G+V    G+T VL T   D  +     GQ    +T  Y     A 
Sbjct: 12  RPMNLST-HVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + T   + I R+I R++R + +     E  +    +V+Q D       
Sbjct: 71  QSRNQREANR-GKLTGRTMEIQRLIGRALRSVVNLYALGERTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL +           +  P    +    V    GQ +L+   +ED   +  +
Sbjct: 128 TSITGAFVALAIAVNKIAEQHKLAVFPITDYLASISVGIAGGQALLDLNYEEDSKAKVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++G     + V+    +   S + +   +  G    + +IE   + 
Sbjct: 188 NLVMTG-GGKFVEVQGTGEESPFSREELDQILELGEKGIRELIERQQEA 235


>gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551]
 gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551]
          Length = 248

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R +S     L+   GS L   GDT+ I   ++    D++    + G  +
Sbjct: 1   MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASI----DDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +PI   +A  ++G+  +      +
Sbjct: 117 DVIQADGGTRTASITGAFVAMVLAFGKLVEENKLTEIPIRDYLAATSVGIHGENS----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T SG    +Q   +    S   +   L   ++G   ++ + 
Sbjct: 173 LDLNYEEDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQ 232

Query: 536 SKVLSE 541
            +VL  
Sbjct: 233 KEVLDH 238



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ L T  + +  +G+VL + G+T V+ T   D  +     GQ    +T  Y     A 
Sbjct: 12  RPVSLHTSYL-KHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       +  + T   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  AQRNIRESSK-GKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A++L+            +P    +    V       +L+   +ED   +  +
Sbjct: 128 ASITGAFVAMVLAFGKLVEENKLTEIPIRDYLAATSVGIHGENSILDLNYEEDSTAEVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V  ++    + +   + +   +  G      +IE   ++
Sbjct: 188 NIVMTGSGQFV-ELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEV 235


>gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
 gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
          Length = 453

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 131/315 (41%), Gaps = 28/315 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L  +++
Sbjct: 2   IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATI----EEKVPFFLKDSEK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  + R     RL  R++  V+        ++ I  
Sbjct: 58  GWVTAEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL           +    PI + +A +++G++ + +    +
Sbjct: 118 DVIQADGGTRTASITGAFVALKLAVEKLLQQGLLTENPIKEYLAAVSVGMLSNDN---CI 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D++ +ED    +D  +  T++G    I     +    G   N M+   +QA    + I 
Sbjct: 175 TDLNYEEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQAIEELISIQ 234

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI-PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
            +   +      ++   T  +    +   ++ + +    G  ++ +++       I++ G
Sbjct: 235 KQAIVINERKSKKVNGNTIVIATSNLGKANEFKKIFEQKGYQVKTLLDYPELP-KIEETG 293

Query: 592 TVKIASSSLAEIEAA 606
                ++ L     A
Sbjct: 294 KTFEENARLKAETIA 308



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 41/237 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     FF        +T  Y   
Sbjct: 13  RSITIETNVF-KYPEGSVVISFGDTKVICSATIEEKVP----FFLKDSEKGWVTAEYSML 67

Query: 67  TYAVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHD 121
             A  +      RR+    +       I R+I RS+R +    K       +  +V+Q D
Sbjct: 68  PRATQR----RNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDCDVIQAD 123

Query: 122 LESSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYI-NGQYVLNPRLDE 169
                   S+  A  AL L+             P +  +    V  + N   + +   +E
Sbjct: 124 GG--TRTASITGAFVALKLAVEKLLQQGLLTENPIKEYLAAVSVGMLSNDNCITDLNYEE 181

Query: 170 D---QGSLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           D   +  ++L ++ T + V  ++    + +   + +   + +G    + +I    + 
Sbjct: 182 DTAAKVDMNLVMTETGNFV-EIQGTGEEATFSGEELNTMLFYGKQAIEELISIQKQA 237


>gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
 gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA I++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G + +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAAL 234

Query: 535 MSKV 538
               
Sbjct: 235 QRDA 238



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P    V    V  ++G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|167586475|ref|ZP_02378863.1| ribonuclease PH [Burkholderia ubonensis Bu]
          Length = 246

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M     R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L
Sbjct: 1   MTQSTSRPSGRRADELRKVTLTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 117 IHIDCDVIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D   + D+   ED     D  V  T   G   +Q   +    S + M   L  A+ G   
Sbjct: 173 DGTPVLDLDYPEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRDEMNALLDLAQSGIGQ 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRLQKDA 240



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R + L T    + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A 
Sbjct: 17  RKVTL-TRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D  +   
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVIQADGGTRTA 133

Query: 128 ------VVSMVAAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLD 175
                 V +  A S   AA  L+  P    V    V   +G  VL+    ED      ++
Sbjct: 134 SITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVFDGTPVLDLDYPEDSRCDTDMN 193

Query: 176 LFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           + ++G     + V+  A  +  S D +   +    +    ++    
Sbjct: 194 VVMTG-AGGFVEVQGTAEGVPFSRDEMNALLDLAQSGIGQLVRLQK 238


>gi|229175161|ref|ZP_04302677.1| Ribonuclease PH [Bacillus cereus MM3]
 gi|228608297|gb|EEK65603.1| Ribonuclease PH [Bacillus cereus MM3]
          Length = 245

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRERTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYVEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 25/229 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPR--LDEDQGSLD 175
            S+  A  A++L           S +P +  +    V  +  Q V+     +++ +  +D
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYVEDSKADVD 187

Query: 176 LFVSGT-QDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           + V  T +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEA 236


>gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2]
 gi|123345879|sp|Q0VT66|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2]
          Length = 238

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R++S          GS L   G+T+ +   ++    ++     L G  +
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASV----EDGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   S      G    R +   RL  R++   +   A    T+ +  
Sbjct: 57  GWLTAEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P++  V  +++G+ KD      +
Sbjct: 117 DVLQADGGTRTASISGACVALVDAFTYLLETKKIKNDPLTGLVGAVSVGMYKDTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G   +Q   +    +       L+ A+ G   I+   
Sbjct: 173 LDLDYAEDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDNLLELAENGIGEIIKAQ 232

Query: 536 SKV 538
              
Sbjct: 233 QVA 235



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 35/219 (15%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL T   +  +     G+    LT  Y     +     G    R  +
Sbjct: 24  AEGSVLVAFGNTKVLCTASVEDGVPRFLKGKGQGWLTAEYSMLPRSTHTRSGREATR-GK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM-- 139
                + I R+I RS+R         E    +  +V+Q D        S+  A  AL+  
Sbjct: 83  QGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQADGG--TRTASISGACVALVDA 140

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVE- 189
                    +   P  G V    V       VL+    ED        +GT   V+M + 
Sbjct: 141 FTYLLETKKIKNDPLTGLVGAVSVGMYKDTPVLDLDYAEDSN------AGTDMNVVMTQQ 194

Query: 190 ---------LEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
                     E    + +   + +    N    +I+A  
Sbjct: 195 GGFIEIQGSAEGAPFTREQSDNLLELAENGIGEIIKAQQ 233


>gi|269836459|ref|YP_003318687.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
 gi|269785722|gb|ACZ37865.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
          Length = 246

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 22/249 (8%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            + R  GR ++ +R ++ Q G      GS+L   G+T  +   T+    +E+    L G 
Sbjct: 6   NRKRPGGRANDELRPVTIQPGFAPYAEGSALITMGNTHVLCTATI----EERVPPFLVGK 61

Query: 370 QRNDFMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
            +      Y  LP ++ +           R     RL  R++  V         T+ I  
Sbjct: 62  GQGWVTAEYGMLPRSSPQRIPRERSLTGGRTQEIQRLIGRSLRAVTKLDLLGERTILIDC 121

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G  +AL               VP++  VA +++G+V D     + 
Sbjct: 122 DVLRADGGTRTAAITGGYVALRLALERLVRTGQLKAVPLTGYVAAVSVGVVWDE----VR 177

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD G I  +Q   +        +   L  A+RG   ++   
Sbjct: 178 LDLEYEEDSQAEVDCNVVMTDRGDIVEVQGTAEGKPFPRARLDAMLDLAERGVRQLVEYQ 237

Query: 536 SKVLSESRL 544
              LS    
Sbjct: 238 KAALSSHSE 246



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 26/199 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ ++ G  A  ++G+ L T G T VL T   +  +     G+    +T  Y     + 
Sbjct: 19  RPVTIQPG-FAPYAEGSALITMGNTHVLCTATIEERVPPFLVGKGQGWVTAEYGMLPRSS 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
              P    R  S        I R+I RS+R +       E    +  +V++ D       
Sbjct: 78  ---PQRIPRERSLTGGRTQEIQRLIGRSLRAVTKLDLLGERTILIDCDVLRADGG--TRT 132

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++     AL L+            +P  G V    V  +  +  L+   +ED   +   
Sbjct: 133 AAITGGYVALRLALERLVRTGQLKAVPLTGYVAAVSVGVVWDEVRLDLEYEEDSQAEVDC 192

Query: 175 DLFVSGTQDAVLMVELEAN 193
           ++ ++   D ++ V+  A 
Sbjct: 193 NVVMTDRGD-IVEVQGTAE 210


>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
 gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
          Length = 247

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            V+  + +R+DGR +  +R +  +VG+L +  GS+    G+T+A+  V  G  E +    
Sbjct: 5   EVLSPEGLRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATV-YGPHEVQNKAK 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L    R    + +     +TGE  +     R+      + RR     +         + 
Sbjct: 64  ALH--DRVLLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG + +A +   +LAL++AG+P+   V+   +  V D      L DI+  E+
Sbjct: 122 IYVQVLQADGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTP----LMDINYLEE 177

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             G     +A       I   QMD +   +  + M   L  A +G   I 
Sbjct: 178 STGGPQLTLAILPKSDKIVLFQMDSR---LHMDNMDKVLALAMKGCKDIY 224



 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 89/210 (42%), Gaps = 18/210 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYA 69
           R +  + G ++ Q+DG+     G T  LATV          K   D   L V +   T++
Sbjct: 23  RKMVCKVGVLS-QADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLLNVQFGMATFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
            G+      +++ R       +S M+ R+     L +   +++  + + V+Q D  +   
Sbjct: 82  TGE-----RKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQADGGNH-- 134

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
           V  + A + AL+ +G+P +  V    V ++N   +++    E+      L L +    D 
Sbjct: 135 VACINAVTLALINAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLTLAILPKSDK 194

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPV 214
           +++ ++++  L  D +   +      CK +
Sbjct: 195 IVLFQMDSR-LHMDNMDKVLALAMKGCKDI 223


>gi|83313597|ref|YP_423861.1| ribonuclease PH [Magnetospirillum magneticum AMB-1]
 gi|82948438|dbj|BAE53302.1| RNase PH [Magnetospirillum magneticum AMB-1]
          Length = 241

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +  + G+ +   GS +   GDT  +   ++    +E+    L  T +
Sbjct: 3   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASV----EEKVPPFLRNTGK 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G  S R     RL  R++  V    A     ++I  
Sbjct: 59  GWVTAEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDC 118

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL           +   +P++  VA I+ G+     + + +
Sbjct: 119 DVLQADGGTRTASITGAFVALHLAFQRLVRLELLKAIPLTDHVAAISCGIY----EGVAV 174

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +    S    +     A+ G   ++   
Sbjct: 175 LDLDYPEDSNAQADANFVMTGTGGIVEIQGTAEERPFSRTQFLELTDLAEAGIRQLVEAQ 234

Query: 536 SKV 538
            K 
Sbjct: 235 KKA 237



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R + LETG ++R ++G+ +A +G+T VL T   +  +           +T  Y     + 
Sbjct: 14  RTVILETG-VSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVTAEYGMLPRST 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
                     + + +     I R+I RS+R +       E Q  +  +V+Q D       
Sbjct: 73  -HTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL L+            +P    V         G  VL+   P     Q   
Sbjct: 130 ASITGAFVALHLAFQRLVRLELLKAIPLTDHVAAISCGIYEGVAVLDLDYPEDSNAQADA 189

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  ++GT   ++ ++  A +   S    L+         + ++EA  K 
Sbjct: 190 NFVMTGT-GGIVEIQGTAEERPFSRTQFLELTDLAEAGIRQLVEAQKKA 237


>gi|15603741|ref|NP_246815.1| ribonuclease PH [Pasteurella multocida subsp. multocida str. Pm70]
 gi|21759412|sp|Q9CJW5|RNPH_PASMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|12722306|gb|AAK03960.1| Rph [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 238

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +   R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATV----EESVPRFLKGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              PI   VA I++G+V    + + +
Sbjct: 117 DVIQADGGTRTASITGACVALCDAIHGLVENGTLKVNPIKSLVAAISVGIV----EGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK G   I +  
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKEGCQLIFDVQ 232

Query: 536 SKVLSE 541
            + L++
Sbjct: 233 RQALAK 238



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   + S+     GQ+   +T  Y     + 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL   + GL         P +  V    V  + G  V +    ED   +
Sbjct: 125 TRTASITGACVALCDAIHGLVENGTLKVNPIKSLVAAISVGIVEGVPVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
             +++ +      ++ V+  A 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAE 205


>gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C]
 gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C]
          Length = 244

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 26/237 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     +      E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTSEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIV----DGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADL 231



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 78/201 (38%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T  +   +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTSEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  ++G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIVDGVPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
 gi|259494125|sp|C3K479|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
          Length = 240

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 25/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL+D            AG P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T   G   +Q   +        +   L  A++G   I   
Sbjct: 174 VLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFEL 233

Query: 535 MSKVLSE 541
            +  L++
Sbjct: 234 QNAALAD 240



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL+             +G P +  +    V    G+ VL+    ED   +  
Sbjct: 129 ASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           L++ ++ T   +  V+  A         +   +         + E  +     
Sbjct: 189 LNVVMTSTGGFI-EVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 240


>gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44]
 gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44]
          Length = 245

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR++  +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V+D     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A+ G L ++ + 
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEHGILQLVEKQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 86/230 (37%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + L T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHLHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEDQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +    +    ++E   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAELNELLDAAEHGILQLVEKQKEA 236


>gi|227552907|ref|ZP_03982956.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
 gi|227177961|gb|EEI58933.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
          Length = 316

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 127/320 (39%), Gaps = 35/320 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R  + +R I+ +  + +   GS +   GDT+ I   T+    +E+    L G   
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATV----EEKVPPFLRGGGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  R++  V+        ++ +  
Sbjct: 58  GWVAAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI + +A +++G++ DG     +
Sbjct: 118 DVIQADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDG---YCV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D  +  T+SG    I     +    G   N M+   +        I 
Sbjct: 175 LDLDYAEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEEL--IA 232

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRN---VIGMGGKVIRGIVEQTGAKVN 586
            +   + + +  ++       +++ I    P + +    + G  G  ++ +++      +
Sbjct: 233 YQKEALYALASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLP-D 291

Query: 587 IDDDGTVKIASSSLAEIEAA 606
           +++ G     ++ L     A
Sbjct: 292 VEETGRTFEENARLKAETIA 311



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    +  +G+V+ ++G+T V+ +   +  +     G     +   Y     A 
Sbjct: 13  RKITIETNVF-KHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVAAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 72  N-TRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V    +G  VL+    ED      
Sbjct: 129 ASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYAEDSNAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPI 230
           +++ ++ + + V  ++    + +   D +   + +G    + +I    + L  + ++E  
Sbjct: 189 MNIVMTESGEFV-EIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYALASEEVP 247

Query: 231 VIDSKD 236
             DS++
Sbjct: 248 SQDSEE 253


>gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 26/251 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA I++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +      + +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRDELNALLDLATAGCADLAKL 234

Query: 535 MSKVLSESRLQ 545
             + L+ +  +
Sbjct: 235 QEEALARTLGE 245



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  ++G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
            +++  +G     + V+  A       D +   +      C  + +   +   
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAEAEPFDRDELNALLDLATAGCADLAKLQEEALA 240


>gi|114762203|ref|ZP_01441671.1| ribonuclease PH [Pelagibaca bermudensis HTCC2601]
 gi|114545227|gb|EAU48230.1| ribonuclease PH [Roseovarius sp. HTCC2601]
          Length = 237

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G+ +   GS L   GDT  I   +L  R        + G+  
Sbjct: 1   MRPSGRDLSEMRPVSIETGVTKHAEGSCLIKMGDTHVICTASLEPR----VPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 117 DVIQADGGTRCAAITGGWVALRLAVNKLMKAGDVITDPLISPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D        G +  +QM  +    S + M   L  A+ G   ++   
Sbjct: 173 LDLDYPEDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRDQMGTLLDLAESGVAQLVEAQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAATA 237



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG + + ++G+ L   G+T V+ T   +  +     G     +T  Y     + 
Sbjct: 12  RPVSIETG-VTKHAEGSCLIKMGDTHVICTASLEPRVPPFIKGSGLGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  G----SRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               ++     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 125 TRCAAITGGWVALRLAVNKLMKAGDVITDPLISPVAAVSCGIYAGQPVLDLDYPEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  + G    + + +  E    S D +   +    +    ++EA      
Sbjct: 185 VDGNFILRGDGQLIEVQMSAEGATFSRDQMGTLLDLAESGVAQLVEAQKAATA 237


>gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
          Length = 255

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +      L    GS L   GDT+ I   ++     E     L G  +
Sbjct: 1   MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVT----ESVPPFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  S R     R+  RA+   +  T     TL +  
Sbjct: 57  GWITAEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+ D             VPI   VA +++G+V    +   L
Sbjct: 117 DVIQADGGTRTASITGAFVAVADALIKLYEDGIIQSVPIKDFVAAVSVGIV----NGKPL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED +  +D  V GT  G  + +Q   +    S + +   L  A +G   ++   
Sbjct: 173 LDLNFEEDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQ 232

Query: 536 SKVLSESR 543
             +   +R
Sbjct: 233 RALYEANR 240



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 27/218 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE--SR 83
           G+ L  +G+T V+ T     S+     G+    +T  Y     A        +R     +
Sbjct: 26  GSCLIEFGDTKVICTASVTESVPPFLKGKGQGWITAEYSMLPRA---THTRNIRESVQGK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHVVSMVAASAALM-- 139
            +     I RMI R++R         E    V  +V+Q D        S+  A  A+   
Sbjct: 83  ISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDCDVIQADGG--TRTASITGAFVAVADA 140

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGT-QDAVLMV 188
                    +  +P +  V    V  +NG+ +L+   +ED    +D+ V GT +     V
Sbjct: 141 LIKLYEDGIIQSVPIKDFVAAVSVGIVNGKPLLDLNFEEDSMAQVDMNVVGTGEGRFSEV 200

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +    +   S D + + +         ++E    L + 
Sbjct: 201 QSMGEEYTFSRDELDNLLDLALKGISELVELQRALYEA 238


>gi|159184261|ref|NP_353359.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
 gi|21759397|sp|Q8UIG8|RNPH_AGRT5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|159139588|gb|AAK86144.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
          Length = 238

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +V  +L    +E+    L  + +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +     G    R     RL  R++  V+   A     + I  
Sbjct: 57  GWVTAEYGMLPRSTNERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D    +           +   +A I+ G+         
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLKWMETRNMIKVEKVLKDHIAAISCGIFAKQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T S GI  +Q   +    SE   +  L  AK G   ++  
Sbjct: 173 VIDLDYLEDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVAL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     + 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  NE----RMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML--------SGLPFEG----PVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL          + +  E      +          Q V++    ED   
Sbjct: 125 TRTASITGAWIALHDCLKWMETRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G+   ++ V+  A     SE+  L  +      C  ++    +   
Sbjct: 185 ETDANFVITGS-GGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238


>gi|85706900|ref|ZP_01037990.1| ribonuclease PH [Roseovarius sp. 217]
 gi|85668511|gb|EAQ23382.1| ribonuclease PH [Roseovarius sp. 217]
          Length = 238

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G+L+   GS L   GDT  +   T+    +E+    + G+  
Sbjct: 1   MRPSGRNLSEMRPVSIETGVLKHAEGSCLIKIGDTHVLCTATI----EERVPPFVKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTNSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 117 DVIQADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLIDPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T S  +  +QM  +    S + M   L  A++G   ++ + 
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSKRLIEVQMSAEGSTYSRDQMNTLLDLAEQGVDLLVAKQ 232

Query: 536 SKVLSE 541
            +    
Sbjct: 233 REATGA 238



 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG + + ++G+ L   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RPVSIETGVL-KHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  N----SRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL            ++S  P   PV         GQ VL+   P   E 
Sbjct: 125 TRCASITGGWVALKLAVQKLMKAGDVISD-PLIDPVAAVSCGIYAGQPVLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
               +  ++G++  + + +  E +  S D +   +         ++    + 
Sbjct: 184 GVDGNFIMTGSKRLIEVQMSAEGSTYSRDQMNTLLDLAEQGVDLLVAKQREA 235


>gi|301155568|emb|CBW15036.1| ribonuclease PH (pseudogene) [Haemophilus parainfluenzae T3T1]
          Length = 238

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASV----DESVPRFLKGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   +A I++G+V    +   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIANGTLKTNPIKGLIAAISVGIV----EGEAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   D S+     GQ+   +T  Y     + 
Sbjct: 12  RPIKI-TRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E  +    +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++GL         P +G +    V  + G+ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINGLIANGTLKTNPIKGLIAAISVGIVEGEAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C+ +  A  + 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREA 235


>gi|152976902|ref|YP_001376419.1| ribonuclease PH [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043753|sp|A7GTG6|RNPH_BACCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152025654|gb|ABS23424.1| ribonuclease PH [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 107/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R +      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREVRELRHVHIHTNYLKHPEGSVLIEVGDTKVICSATV----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G++++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVTKIPVKDYLAATSVGILEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A+ G L ++ + 
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGHFVEVQGTGEEATFSRAQLNELLDAAEHGILQLIEKQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 33/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHVHIHTNYL-KHPEGSVLIEVGDTKVICSATVEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L+            +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVTKIPVKDYLAATSVGILEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS-----EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +      + +LDA   G      +IE   + 
Sbjct: 188 MNVIMTG-KGHFVEVQGTGEEATFSRAQLNELLDAAEHG---ILQLIEKQKEA 236


>gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 238

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+         +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAINYMLEKGMIKKNPLKGMVAAVSVGIYNGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK G   I++  
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T V+ T   + ++     G+    +T  Y     A 
Sbjct: 12  RPITI-TRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R         E    V  +V+Q D    
Sbjct: 71  ----HTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  AL           M+   P +G V    V   NG+ + +    ++    
Sbjct: 125 TRTASITGAMVALVDAINYMLEKGMIKKNPLKGMVAAVSVGIYNGEPICDLEYLEDSAAE 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + +L  +    +    +I    +  +
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKQALE 237


>gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 238

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+         +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAIHYMLEKGMIKKNPLKTMVAAVSVGIYNGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK G   I+ + 
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T V+ T   + ++     GQ    +T  Y     A 
Sbjct: 12  RPITI-TRQFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGQGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R         E    V  +V+Q D    
Sbjct: 71  ----HSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  AL           M+   P +  V    V   NG+ + +    ++    
Sbjct: 125 TRTASITGAMVALVDAIHYMLEKGMIKKNPLKTMVAAVSVGIYNGEPICDLEYLEDSAAE 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + +L  +         +I    +   
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQKQALA 237


>gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
 gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
          Length = 240

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR+D R +  +R +      L+   GS L   G+T+ I  V+     +E+    L GT +
Sbjct: 2   VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVS----MEEKVPPFLKGTNQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        GA + R     RL  R++  V+  +     T+ I +
Sbjct: 58  GWLTAEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDA 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D             +PI + VA +++G+V    D  IL
Sbjct: 118 DVIQADGGTRTAAITGAFVALYDALEKLKREGIIKEIPIREFVAAVSVGIV----DGEIL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S +ED    +D  V  T+SG    +Q   +    +   +   L  AK+G + ++   
Sbjct: 174 LDLSANEDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTHEQLQHMLNLAKQGIMRLIEIQ 233

Query: 536 SK 537
            K
Sbjct: 234 KK 235



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 36/233 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T +  +   G+VL   GET V+ TV  +  +     G +   LT  Y       
Sbjct: 13  RPVKI-TRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLTAEY------- 64

Query: 71  GKIPGGYLRR------ESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDL 122
           G +PG    R      +         I R+I RS+R +  FSK  +    +  +V+Q D 
Sbjct: 65  GMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDADVIQADG 124

Query: 123 ESSPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DED 170
                  ++  A  AL            +  +P    V    V  ++G+ +L+    ++ 
Sbjct: 125 G--TRTAAITGAFVALYDALEKLKREGIIKEIPIREFVAAVSVGIVDGEILLDLSANEDM 182

Query: 171 QGSLDLFVSGTQ-DAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISK 220
           +  +D+ V  T+    + ++  A +   + + +   +         +IE   K
Sbjct: 183 RAEVDMNVVMTESGKFVEIQGTAEKTPFTHEQLQHMLNLAKQGIMRLIEIQKK 235


>gi|46201192|ref|ZP_00055593.2| COG0689: RNase PH [Magnetospirillum magnetotacticum MS-1]
          Length = 239

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +  + G+ +   GS +   GDT  +   ++    +E+    L  T +
Sbjct: 1   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASV----EEKVPPFLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G  S R     RL  R++  V    A     ++I  
Sbjct: 57  GWVTAEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQIKIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL           +   +P++  VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASITGAFVALHLAFQRLVRLELLKAIPLTDHVAAISCGIY----EGTAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T + GI  +Q   +    S    +     A+ G   ++   
Sbjct: 173 LDLDYPEDSNAQADANFVMTGNGGIVEIQGTAEERPFSRAQFLELTDLAEAGIRQLVEAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 KKA 235



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R + LETG ++R ++G+ +A +G+T VL T   +  +           +T  Y     + 
Sbjct: 12  RTVILETG-VSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNETQVIINVMQHDLESSPH 127
                     + + +     I R+I RS+R    L +   +   ++  +V+Q D      
Sbjct: 71  -HTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQ-IKIDCDVLQADGG--TR 126

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGS 173
             S+  A  AL L+            +P    V         G  VL+   P     Q  
Sbjct: 127 TASITGAFVALHLAFQRLVRLELLKAIPLTDHVAAISCGIYEGTAVLDLDYPEDSNAQAD 186

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            +  ++G    ++ ++  A +   S    L+         + ++EA  K 
Sbjct: 187 ANFVMTGN-GGIVEIQGTAEERPFSRAQFLELTDLAEAGIRQLVEAQKKA 235


>gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 239

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++     L+   GS L   GDT+ +   ++    ++       GT   
Sbjct: 3   RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASV----EDGVPRWRRGTGEG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T          G    R     RL  R++  V+   A   +T+ +  +
Sbjct: 59  WVTAEYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL D              P++  +A +++G+V+         
Sbjct: 119 VLQADGGTRTAAITGAYVALADAMKWLRKRRKLKNNPLTGSLAAVSVGVVQGQPR----L 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED +   D  V  T  G    +Q   +      +++   L  A  G   +     
Sbjct: 175 DLNYLEDSVADTDMNVVITGDGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGCGELTAIQK 234

Query: 537 KVLSE 541
           K LSE
Sbjct: 235 KALSE 239



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +    + R ++G+VL  +G+T VL     +  +   + G     +T  Y     + 
Sbjct: 13  RPVTITRNWL-RHAEGSVLVEFGDTRVLCAASVEDGVPRWRRGTGEGWVTAEYAMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR++ RS+R +       E  +    +V+Q D       
Sbjct: 72  -DTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            L   P  G +    V  + GQ  L+    ED      +
Sbjct: 129 AAITGAYVALADAMKWLRKRRKLKNNPLTGSLAAVSVGVVQGQPRLDLNYLEDSVADTDM 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G     + V+  A       D++   +    + C  +     K 
Sbjct: 189 NVVITG-DGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGCGELTAIQKKA 236


>gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
 gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
          Length = 250

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 24/253 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R    +R I  +  + +   GS L   GDT+ +   T+    +E+    L G + 
Sbjct: 1   MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATV----EEKVPPFLRGKRH 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWINAEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  LAL+               PI + +A +++G V       +L
Sbjct: 117 DVLQADGGTRTAAITGGFLALVLAVDGLIQSGKLTDTPIKEGIAAVSVGKVGTE----LL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +  T SG I  +Q   +    S   M+  L+  ++G   +L+  
Sbjct: 173 LDLCYEEDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELLHAA 232

Query: 536 SKVLSESRLQLGE 548
            + L  S   +GE
Sbjct: 233 EQSLGASWWYVGE 245



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 26/228 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R ++LET  + + ++G+VL + G+T VL T   +  +     G+    +   Y     A 
Sbjct: 12  RKIQLET-DVNKHAEGSVLISVGDTRVLCTATVEEKVPPFLRGKRHGWINAEYAMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +  G    R  + T   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  AQRTGREAVR-GKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++     AL+L+             P +  +    V  +  + +L+   +ED      L
Sbjct: 128 AAITGGFLALVLAVDGLIQSGKLTDTPIKEGIAAVSVGKVGTELLLDLCYEEDAAADVDL 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +L ++ +   ++ ++    + +     +LD +  G    + ++ A  +
Sbjct: 188 NLVMT-SSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELLHAAEQ 234


>gi|21759411|sp|Q9AES0|RNPH_PASHA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|13591380|gb|AAK29744.1| ribonuclease PH-like protein [Mannheimia haemolytica]
          Length = 238

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  VR+I       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATV----EESVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVAAISVGIVAGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V     G +  +Q   +    S   ++  L  AK+G   ++   
Sbjct: 173 CDLEYLEDSNAETDMNVVMVQDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQ 232

Query: 536 SKVLSE 541
            K L+E
Sbjct: 233 RKALAE 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +GET VL     + S+     GQ    +T  Y     A 
Sbjct: 12  REIKI-TRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVTAEYGMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +      +   +     + I R+I RS+R +       E    V  +V+Q D      
Sbjct: 71  HSRTQREAAK--GKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            L   P +G V    V  + G+ V +    ED   +  
Sbjct: 127 TASITGACVALYDAMNKLVANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYLEDSNAETD 186

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ +      ++ V+   E    S   +L  +         ++EA  K    
Sbjct: 187 MNVVMV-QDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238


>gi|332978052|gb|EGK14790.1| tRNA nucleotidyltransferase [Desmospora sp. 8437]
          Length = 289

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 24/248 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R+DGR    +R +      ++   GS L   GDT+ I   ++    +E+    L G+ 
Sbjct: 30  ELRVDGRQYNELRKVEMISDYIKHAEGSVLMCVGDTKVICTASV----EERVPPFLRGSG 85

Query: 371 RNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y+ LP AT       S  G    R +   RL  R++  V+        T+ + 
Sbjct: 86  KGWVTAEYSMLPRATQSRTIRESSKGKVGGRTMEIQRLIGRSLRSVIQLDRLGERTIWLD 145

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A       L+ +G    VPI+  +A  ++G+V    D   
Sbjct: 146 CDVIQADGGTRTASITGAFVAAAQAIHGLVKSGALDSVPITDFLAATSVGIV----DGQP 201

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             D+  +ED    +D  V  T SG    +Q   +    +   +   L  A  G   ++  
Sbjct: 202 CLDLCYEEDSKAKVDMNVVMTGSGKYVEIQGTGEESPFTPEELHQLLALAGHGTEQLIRL 261

Query: 535 MSKVLSES 542
              VL E+
Sbjct: 262 QKDVLQEA 269



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 85/222 (38%), Gaps = 21/222 (9%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G     +T  Y     A  +        +
Sbjct: 52  KHAEGSVLMCVGDTKVICTASVEERVPPFLRGSGKGWVTAEYSMLPRAT-QSRTIRESSK 110

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALM 139
            +     + I R+I RS+R +       E  +    +V+Q D  +    ++    +AA  
Sbjct: 111 GKVGGRTMEIQRLIGRSLRSVIQLDRLGERTIWLDCDVIQADGGTRTASITGAFVAAAQA 170

Query: 140 LSG---------LPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
           + G         +P    +    V  ++GQ  L+   +ED   +  +++ ++G+   V  
Sbjct: 171 IHGLVKSGALDSVPITDFLAATSVGIVDGQPCLDLCYEEDSKAKVDMNVVMTGSGKYV-E 229

Query: 188 VELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           ++    +   + + +   +    +  + +I     + +  A+
Sbjct: 230 IQGTGEESPFTPEELHQLLALAGHGTEQLIRLQKDVLQEAAR 271


>gi|217978304|ref|YP_002362451.1| ribonuclease PH [Methylocella silvestris BL2]
 gi|254808594|sp|B8ERN7|RNPH_METSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|217503680|gb|ACK51089.1| ribonuclease PH [Methylocella silvestris BL2]
          Length = 237

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++ +  + +   GS L   G T  +   +L    +++    L G  R
Sbjct: 1   MRPSQRAADELRPVTFERNVARYAEGSCLIKFGSTHVLCTASL----EDKPPAWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G PS R     RL  R++  V          + I  
Sbjct: 57  GWVSAEYAMLPRATHTRTKRESTTGKPSGRTQEIQRLIGRSLRAVTNLQGLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D             +P+   VA I+ G V +G+    +
Sbjct: 117 DVLQADGGTRTAAITGAWVALHDCLKWMRQRSIIKDLPLRDHVAAISCG-VSNGES---V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T SG +  +Q   +    +E  +   L  A+ G   ++   
Sbjct: 173 LDLDYAEDSAAETDANFVITGSGSLVEVQATAEGAVFTETQLTAMLALARGGITTLVEMQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KAAVA 237



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+  E   +AR ++G+ L  +G T VL T   +        GQ    ++  Y     A 
Sbjct: 12  RPVTFERN-VARYAEGSCLIKFGSTHVLCTASLEDKPPAWLRGQGRGWVSAEYAMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   +RE    +P+     I R+I RS+R + +     E Q+    +V+Q D    
Sbjct: 71  ----HTRTKRESTTGKPSGRTQEIQRLIGRSLRAVTNLQGLGERQITIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL            +  LP    V        NG+ VL+    ED   +
Sbjct: 125 TRTAAITGAWVALHDCLKWMRQRSIIKDLPLRDHVAAISCGVSNGESVLDLDYAEDSAAE 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G+   V +    E    +E  +   +         ++E       
Sbjct: 185 TDANFVITGSGSLVEVQATAEGAVFTETQLTAMLALARGGITTLVEMQKAAVA 237


>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 243

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+   G  +   GS+L   G+T+ +   +      E     L G  + 
Sbjct: 5   REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFT----EGVPRWLKGEGKG 60

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  V+        T+ +  +
Sbjct: 61  WVTAEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A++ G+ +AL D                P+   V+ I++G++    D   
Sbjct: 121 VLQADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGII----DGTP 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T SG    +Q   +      + +   L  A  G   +   
Sbjct: 177 MLDLPYTEDVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQI 236

Query: 535 MSKV 538
             + 
Sbjct: 237 QREA 240



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  +R ++G+ L  +G T VL T  +   +     G+    +T  Y     A 
Sbjct: 15  RPITITRGW-SRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTAEYAMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + R       ISR+I RS+R + +     E  ++   +V+Q D       
Sbjct: 74  N-TRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAAL--MLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  A  AL   +S             P    V    V  I+G  +L+    ED   + 
Sbjct: 131 ASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTEDVRAET 190

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
            +++ V+G+    + V+  A  +    D +   +         + +   +   
Sbjct: 191 DMNVVVTGS-GKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQREALA 242


>gi|325291761|ref|YP_004277625.1| ribonuclease PH [Agrobacterium sp. H13-3]
 gi|325059614|gb|ADY63305.1| ribonuclease PH [Agrobacterium sp. H13-3]
          Length = 238

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +V  +L    +E+    L  + +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASL----EEKTPPWLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +     G    R     RL  R++  V+   A     + I  
Sbjct: 57  GWVTAEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D    +           +   +A I+ G+         
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLKWMETRNMIKVEKVLKDHIAAISCGIFAKQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T S GI  +Q   +    SE   +  L  AK G   ++  
Sbjct: 173 VIDLDYLEDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVAL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 33/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +              +T  Y     + 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            +     ++RE    +       I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  HE----RMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML--------SGLPFEG----PVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL          + +  E      +          Q V++    ED   
Sbjct: 125 TRTASITGAWIALHDCLKWMETRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYLEDSSA 184

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G+   ++ V+  A     SE+  L  +      C  ++    +   
Sbjct: 185 ETDANFVITGS-GGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238


>gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
 gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
          Length = 238

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR  + +R +S ++G      GS L   G+T+ +   ++    ++     L G  +
Sbjct: 1   MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASV----EDNVPPWLRGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +R     G PS R     RL  R++   +   A     + +  
Sbjct: 57  GWVTGEYSMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ LAL           +    P+   +A ++ G+V        +
Sbjct: 117 DVLQADGGTRTAAITGAWLALKAAVAYLMEEDVLKADPVIAQIAAVSAGVVNGD----CV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED +   D     T   G+  +Q   +   +++         A++G   +    
Sbjct: 173 LDLEYEEDRVAETDANFVLTSTGGVIEVQATAEDAPMTQEQFDQIFALARKGVSDLCAAQ 232

Query: 536 SKVLSE 541
            K L +
Sbjct: 233 LKALGQ 238



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 34/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RPL  E G  +  ++G+ L ++G T VL T   +       D  P  +  Q + +  G+ 
Sbjct: 12  RPLSFEMGW-SPYAEGSCLISFGNTKVLCTASVE-------DNVPPWLRGQGKGWVTGEY 63

Query: 74  PGGYL------RRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL 122
                      RRE    +P+     I R+I RS+R         E Q++   +V+Q D 
Sbjct: 64  SMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDCDVLQADG 123

Query: 123 ESSPHV-----VSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED--- 170
            +         +++ AA A LM   +    P    +       +NG  VL+   +ED   
Sbjct: 124 GTRTAAITGAWLALKAAVAYLMEEDVLKADPVIAQIAAVSAGVVNGDCVLDLEYEEDRVA 183

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +   +  ++ T   V+ V+  A    ++++               +  A  K 
Sbjct: 184 ETDANFVLTST-GGVIEVQATAEDAPMTQEQFDQIFALARKGVSDLCAAQLKA 235


>gi|307822918|ref|ZP_07653148.1| ribonuclease PH [Methylobacter tundripaludum SV96]
 gi|307735693|gb|EFO06540.1| ribonuclease PH [Methylobacter tundripaludum SV96]
          Length = 345

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+ + +RDI    G  +   GS L   GDT+ +   ++    D      L G   
Sbjct: 106 MRPSGRNPDQLRDIKFTCGFTKHAEGSVLVEFGDTRVLCTASV----DRSVPRFLKGKGE 161

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +   A   +T+ I  
Sbjct: 162 GWITAEYGMLPRSTHSRMGREASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEHTIMIDC 221

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL                P+   +A +++G+     + + +
Sbjct: 222 DVLQADGGTRTASITGGFVALSLAVQKMLKRKQIKTNPLHGQIASVSVGIY----NGVPV 277

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D +    +Q   +     +  +   L  A  G   +L + 
Sbjct: 278 LDLDYAEDSNAETDMNVVMNDAAAFIEVQGTAEGHAFRKEELDAMLALAGSGIKELLEKQ 337

Query: 536 SKVLSESR 543
              +   +
Sbjct: 338 RFAIENHK 345



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 43/242 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           R +K   G   + ++G+VL  +G+T VL T   DRS+     F        +T  Y    
Sbjct: 117 RDIKFTCG-FTKHAEGSVLVEFGDTRVLCTASVDRSVP---RFLKGKGEGWITAEYGMLP 172

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESS 125
            +      G      +     + I R+I RS+R     K    +   +  +V+Q D    
Sbjct: 173 RST-HSRMGREASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEHTIMIDCDVLQADGG-- 229

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+     AL L+             P  G +    V   NG  VL+    ED   +
Sbjct: 230 TRTASITGGFVALSLAVQKMLKRKQIKTNPLHGQIASVSVGIYNGVPVLDLDYAEDSNAE 289

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
             +++ +    DA   +E++               GH   K  ++A+  LA    KE + 
Sbjct: 290 TDMNVVM---NDAAAFIEVQGT-----------AEGHAFRKEELDAMLALAGSGIKELLE 335

Query: 232 ID 233
             
Sbjct: 336 KQ 337


>gi|119773461|ref|YP_926201.1| ribonuclease PH [Shewanella amazonensis SB2B]
 gi|166228315|sp|A1S2C5|RNPH_SHEAM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119765961|gb|ABL98531.1| RNAse PH [Shewanella amazonensis SB2B]
          Length = 237

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R IS          GS L   G+T+ +   +      E     L G+ +
Sbjct: 1   MRPGNRTPAQTRPISITRNFTAHAEGSVLVEFGETKVLCTASFT----EGVPRFLKGSGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +        T+ +  
Sbjct: 57  GWLTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+     +   +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGLVKANPLKFLIAAVSVGI----HNGEAI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G I  +Q   +    +   ++  L+ AK G   I++  
Sbjct: 173 CDLEYVEDSAAETDMNVVMTETGKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +     A  ++G+VL  +GET VL T  +   +     G     LT  Y     + 
Sbjct: 12  RPISITRNFTAH-AEGSVLVEFGETKVLCTASFTEGVPRFLKGSGQGWLTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHV 128
                    R  + +     I R+I R++R     K     T V+  +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL           ++   P +  +    V   NG+ + +    ED   +  +
Sbjct: 128 AAITGACVALVDALNWARGKGLVKANPLKFLIAAVSVGIHNGEAICDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ V+   E    + + +L  +    +  + +I+   
Sbjct: 188 NVVMTET-GKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQK 233


>gi|227820597|ref|YP_002824567.1| ribonuclease PH [Sinorhizobium fredii NGR234]
 gi|254808598|sp|C3MEJ1|RNPH_RHISN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|227339596|gb|ACP23814.1| ribonuclease PH [Sinorhizobium fredii NGR234]
          Length = 239

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 96/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +++    L    +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASL----EDKVPAWLRNGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  R     G  S R     RL  R++  V+   A     + I  
Sbjct: 57  GWITAEYGMLPRATGERMRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D                +   VA I+ G+  +      
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLKWMEARNMIKVERVLKDHVAAISCGIFANQ----A 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T S G+  +Q   +    SE      +Q AK G   ++  
Sbjct: 173 VVDLDYLEDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMQLAKDGIAELVAL 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAVA 238



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 31/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +  +           +T  Y     A 
Sbjct: 12  RKVSFERN-FSKHAEGSCLVRFGDTHVLCTASLEDKVPAWLRNGGKGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
           G+     +RRE    + +     I R+I RS+R +       + +  +  +V+Q D    
Sbjct: 71  GER----MRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML--------SGLPFE----GPVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL          + +  E      V          Q V++    ED   
Sbjct: 125 TRTASITGAWIALHDCLKWMEARNMIKVERVLKDHVAAISCGIFANQAVVDLDYLEDSAA 184

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G+   V +    E    SE+     +    +    ++    +   
Sbjct: 185 ETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMQLAKDGIAELVALQKQAVA 238


>gi|149184525|ref|ZP_01862843.1| RNase PH [Erythrobacter sp. SD-21]
 gi|148831845|gb|EDL50278.1| RNase PH [Erythrobacter sp. SD-21]
          Length = 238

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ + G  +   GS L   G+T+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLISFGETKVLCTASV----EERIPPWLRGRGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT    +     G  S R     RL  R++  V+         + +  
Sbjct: 57  GWVTGEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       LM +G     PI+  VA ++ G+ K       +
Sbjct: 117 DVIQADGGTRTASISGAWVALRLAVNELMKSGDLVEDPITAKVAAVSCGIYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D      + G I   Q   +     E   +  L+ A+ G   I    
Sbjct: 173 LDLDYPEDSNADADANFVLIEGGKIAEAQATAEGAPYDEEAFLRLLRLAQMGCADIFRAQ 232

Query: 536 SKVLSE 541
            +   +
Sbjct: 233 DEATRK 238



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 20/226 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L ++GET VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RAITIETG-YTKHAEGSCLISFGETKVLCTASVEERIPPWLRGRGEGWVTGEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q+    +V+Q D  +    
Sbjct: 71  -HTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDCDVIQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDL 176
           +S    +  L ++ L         P    V         G  VL+   P         + 
Sbjct: 130 ISGAWVALRLAVNELMKSGDLVEDPITAKVAAVSCGIYKGTPVLDLDYPEDSNADADANF 189

Query: 177 F-VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             + G + A      E     E+  L  +      C  +  A  + 
Sbjct: 190 VLIEGGKIAEAQATAEGAPYDEEAFLRLLRLAQMGCADIFRAQDEA 235


>gi|39996894|ref|NP_952845.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|61215993|sp|Q74C79|RNPH_GEOSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39983782|gb|AAR35172.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|307634928|gb|ADI84630.2| ribonuclease PH [Geobacter sulfurreducens KN400]
          Length = 238

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+  ++R+I      L+   GS L   GDT+ +   ++    +E     L G   
Sbjct: 1   MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASV----EESVPPFLRGKGG 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R     RL  R++  V   T     ++ I  
Sbjct: 57  GWVTAEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA            +P+ + VA +++G+V       +L
Sbjct: 117 DVLQADGGTRTASITGAYVALVDAFQWLVSQGTIATLPVREAVAAVSVGIVGGE----VL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D     T SG    +Q   +    +   M      A  G   ++   
Sbjct: 173 LDLNYIEDSRADVDMNFVMTSSGRFVEVQGTAEAEPFTCAQMDDMRSLAMIGIERLMAIQ 232

Query: 536 SKVLSE 541
            +VL +
Sbjct: 233 QEVLEQ 238



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R +++ T +  + ++G+VL  +G+T VL T   + S+           +T  Y     A 
Sbjct: 12  RNIRI-TRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                     + +       I R+I RS+R +       E    +  +V+Q D       
Sbjct: 71  -HTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            ++ LP    V    V  + G+ +L+    ++ +  +D+
Sbjct: 128 ASITGAYVALVDAFQWLVSQGTIATLPVREAVAAVSVGIVGGEVLLDLNYIEDSRADVDM 187

Query: 177 FVSGT 181
               T
Sbjct: 188 NFVMT 192


>gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|226736942|sp|B1VVV6|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 245

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA I++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G + +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAAL 234

Query: 535 MSKV 538
               
Sbjct: 235 QRDA 238



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P    V    V  ++G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|254512351|ref|ZP_05124418.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
 gi|221536062|gb|EEE39050.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
          Length = 237

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 24/232 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRDLNEMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            D+   ED    +D     T +G +  +QM  +    S   M   +  A++G
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGTGKLIEVQMSAEGSVFSRTQMDQLMDLAEKG 224



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 32/218 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RAVSIETG-FTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL            ++S  P   PV         GQ VL+   P   E 
Sbjct: 125 TRCASITGGWVALRLAVNKLMKAGDVISD-PLVDPVAAVSCGIYAGQPVLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFG 207
               +  ++GT   + + +  E +  S   +   +   
Sbjct: 184 GVDGNFIMTGTGKLIEVQMSAEGSVFSRTQMDQLMDLA 221


>gi|332284454|ref|YP_004416365.1| ribonuclease PH [Pusillimonas sp. T7-7]
 gi|330428407|gb|AEC19741.1| ribonuclease PH [Pusillimonas sp. T7-7]
          Length = 271

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+ GR +  +R +  + G  +   GS L   GDT  +   ++     E+    L G  + 
Sbjct: 36  RLSGRAASELRPVVIETGYTRHAEGSVLIKAGDTHVLCNASV----LEKVPPFLKGKSQG 91

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V   TA    T+++  +
Sbjct: 92  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDCD 151

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       L++ GV    P+   VA +++GLV        L 
Sbjct: 152 VLQADGGTRCASITGAWVAAALAVRGLVEQGVLAQSPLLDQVAAVSVGLV----GGQALL 207

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  +  T +G    +Q   +        +   L  A+ G   +L E  
Sbjct: 208 DLDYTEDSGCGADMNIVMTGAGHFVEVQGTAEGQTFERKALDELLDLAQDGIRQLLAEQK 267

Query: 537 KV 538
           + 
Sbjct: 268 RA 269



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 20/228 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG   R ++G+VL   G+T VL        +     G+    +T  Y     + 
Sbjct: 46  RPVVIETG-YTRHAEGSVLIKAGDTHVLCNASVLEKVPPFLKGKSQGWVTAEYGMLPRST 104

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +F      E   Q+  +V+Q D  +    
Sbjct: 105 -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDCDVLQADGGTRCAS 163

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
           ++    +AAL + GL         P    V    V  + GQ +L+    ED G    +++
Sbjct: 164 ITGAWVAAALAVRGLVEQGVLAQSPLLDQVAAVSVGLVGGQALLDLDYTEDSGCGADMNI 223

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            ++G    V +    E        + + +    +  + ++    +   
Sbjct: 224 VMTGAGHFVEVQGTAEGQTFERKALDELLDLAQDGIRQLLAEQKRALA 271


>gi|15964129|ref|NP_384482.1| ribonuclease PH [Sinorhizobium meliloti 1021]
 gi|307301274|ref|ZP_07581036.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
 gi|307317945|ref|ZP_07597382.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|21759408|sp|Q92SK2|RNPH_RHIME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15073305|emb|CAC41813.1| Probable ribonuclease PH protein [Sinorhizobium meliloti 1021]
 gi|306896347|gb|EFN27096.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|306903730|gb|EFN34317.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
          Length = 239

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 96/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +E+    L    +
Sbjct: 1   MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASL----EEKVPAWLRNGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  R     G  S R     RL  R++  V+   A     + I  
Sbjct: 57  GWITAEYGMLPRATGERMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D    +           +   VA I+ G+  +      
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLKWMEARNMVKLEKVLKDHVAAISCGIFANQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T S G+  +Q   +    SE      +  AK G   ++  
Sbjct: 173 VIDLDYLEDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEM 232

Query: 535 MSKVLS 540
             + ++
Sbjct: 233 QKQAIA 238



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 31/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +  E    ++ ++G+ L  +G+T VL T   +  +           +T  Y     A 
Sbjct: 12  RKVSFER-SFSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNGGKGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
           G+     +RRE    + +     I R+I RS+R +       + +  +  +V+Q D    
Sbjct: 71  GE----RMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
               S+  A  AL                   +  V          Q V++    ED   
Sbjct: 125 TRTASITGAWIALHDCLKWMEARNMVKLEKVLKDHVAAISCGIFANQPVIDLDYLEDSAA 184

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  ++G+   V +    E    SE+     ++   N    ++E   +   
Sbjct: 185 ETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEMQKQAIA 238


>gi|330831556|ref|YP_004394508.1| RNase PH [Aeromonas veronii B565]
 gi|328806692|gb|AEB51891.1| RNase PH [Aeromonas veronii B565]
          Length = 238

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 95/241 (39%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +  +R ++      +   GS L   G+T+ +   ++ T         L G  + 
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTS----VPRFLKGKNQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T          G  S R +   RL  R++   +  TA   +++ +  +
Sbjct: 59  WVTAEYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+D              P+ + +A +++G+ +       + 
Sbjct: 119 VLQADGGTRTASITGACVALVDALNWMVEKGMIKQSPLKQMIAAVSVGMYQGE----AIC 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T+ G I  +Q   +    +   ++  L  AK G   I+    
Sbjct: 175 DLEYIEDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQK 234

Query: 537 K 537
           +
Sbjct: 235 Q 235



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G T VL T   D S+     G++   +T  Y     + 
Sbjct: 13  RPVTI-TRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +   + ISR+I RS+R         E    V  +V+Q D       
Sbjct: 72  -HSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL           M+   P +  +    V    G+ + +    ++     D+
Sbjct: 129 ASITGACVALVDALNWMVEKGMIKQSPLKQMIAAVSVGMYQGEAICDLEYIEDSAAETDM 188

Query: 177 FVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            V  T+D  ++ V+   EA   + + +L+ +         +I    +
Sbjct: 189 NVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQ 235


>gi|62867371|dbj|BAD95986.1| polyribonucleotide nuculeotidyltransferase [Campylobacter lari]
          Length = 243

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 25/252 (9%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           AG+   K VAG+AMGLV + + + IL+DI G EDH G MDFKVAG+  GITA+QMD+K+G
Sbjct: 1   AGIKSEKLVAGVAMGLVFEDEKYAILTDIMGLEDHDGDMDFKVAGSYEGITALQMDIKLG 60

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI + ++  AL QAK  R HIL  M +      +      P++EI  + P++I ++IG G
Sbjct: 61  GIEQQVLKEALYQAKEAREHILKLMEEADRNIIVN-EAILPKIEIFNVDPNKIPDIIGQG 119

Query: 571 GKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAARE--------------MIRSITD 615
           GK I+ I+E+    +++D D G VKIA  +   I  ++E                R    
Sbjct: 120 GKTIKEIIEKFEVNIDLDRDKGEVKIAGVNHDLISQSKEYILNLLHSKGSNKKRDRKEMP 179

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             ++ + + G+V KV++FG FV      DGL+H S        K  + ++ G+ + VK+ 
Sbjct: 180 KFDIGEEFIGKVQKVVEFGVFVELKDGVDGLLHNS--------KIKEKLEVGNEIKVKVA 231

Query: 676 DFDDRGKIKLSM 687
           +    GK+ L +
Sbjct: 232 EI-KNGKVSLDL 242


>gi|253575653|ref|ZP_04852989.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844991|gb|EES73003.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 252

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 106/243 (43%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR ++  R ++  V + +   GS     GDT+ +   T+    +E+    + G  +
Sbjct: 1   MRSNGRQADERRAMNLTVNVNKYAEGSVYIEVGDTKVMCTATV----EEKVPMFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G  S R +   RL  RA+  V+   A    ++ I  
Sbjct: 57  GWVTAEYSMLPRATQTRNQRESARGKLSGRTMEIQRLIARALRSVVDLQALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL  A             PI+  +A +++G+V +      L
Sbjct: 117 DVLQADGGTRTTSITGAFVALALAMHKIAQKHALPKFPITDFLASVSVGIVGED----TL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T +G    +Q   +    S   +   L+ A++G   ++ + 
Sbjct: 173 LDLNYEEDSKAKVDMNVVMTGNGQFVEVQGTGEENPFSRAELDHMLELAEKGIREMIEQQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 21/216 (9%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+V    G+T V+ T   +  +     GQ    +T  Y     A  +         
Sbjct: 22  KYAEGSVYIEVGDTKVMCTATVEEKVPMFMKGQGKGWVTAEYSMLPRAT-QTRNQRESAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R +       E    +  +V+Q D  +    ++    + AL 
Sbjct: 81  GKLSGRTMEIQRLIARALRSVVDLQALGERSITIDCDVLQADGGTRTTSITGAFVALALA 140

Query: 140 LSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
           +  +         P    +    V  +    +L+   +ED   +  +++ ++G    V  
Sbjct: 141 MHKIAQKHALPKFPITDFLASVSVGIVGEDTLLDLNYEEDSKAKVDMNVVMTGNGQFV-E 199

Query: 188 VELEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
           V+    +   S   +   +       + +IE   + 
Sbjct: 200 VQGTGEENPFSRAELDHMLELAEKGIREMIEQQREA 235


>gi|322383243|ref|ZP_08057054.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152512|gb|EFX45298.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 251

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 24/254 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +       +   GS L   GDT+ I   T+    +E+    L    +
Sbjct: 1   MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATI----EERVPPFLKNEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G    R +   RL  RA+  V+   A    ++ +  
Sbjct: 57  GWVTAEYSMLPRATQVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM--------DAGV---PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +A+         D  +   PI+  +A +++G+V+       L
Sbjct: 117 DVIQADGGTRTTSITGAFIAMSLAIHKLMEDKKITVNPITDYLASVSVGIVQGE----TL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   H+D  V  T  G    +Q   +    S++ +   L  A+ G L ++   
Sbjct: 173 LDLMYTEDSQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQ 232

Query: 536 SKVLSESRLQLGEF 549
            + L  +   +G  
Sbjct: 233 REALGAAGETIGVN 246



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 22/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL   G+T V+ T   +  +      +    +T  Y     A 
Sbjct: 12  RPVRI-TPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            ++       + +     + I R+I R++R + +     E  +    +V+Q D  +    
Sbjct: 71  -QVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLDCDVIQADGGTRTTS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           ++    + +L +  L         P    +    V  + G+ +L+    ED      +++
Sbjct: 130 ITGAFIAMSLAIHKLMEDKKITVNPITDYLASVSVGIVQGETLLDLMYTEDSQAHVDMNV 189

Query: 177 FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            ++G    V  V+    +   S+D +   +         +IE   +      +
Sbjct: 190 VMTGRGHFV-EVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREALGAAGE 241


>gi|260429579|ref|ZP_05783556.1| ribonuclease PH [Citreicella sp. SE45]
 gi|260420202|gb|EEX13455.1| ribonuclease PH [Citreicella sp. SE45]
          Length = 296

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R +S + G+ +   GS L   GDTQ I   +L    +E+    + G+  
Sbjct: 60  MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASL----EERVPPFIKGSGL 115

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R     G    R +   RL  R++   + + A     + I  
Sbjct: 116 GWVTAEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDC 175

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 176 DVIQADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAGQP----I 231

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D        G +  +QM  +    S   M   +  A++G   ++   
Sbjct: 232 LDLDYPEDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQ 291

Query: 536 SKVLS 540
              ++
Sbjct: 292 KAAVA 296



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 82/233 (35%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG I + ++G+ L   G+T V+ T   +  +     G     +T  Y     + 
Sbjct: 71  RTVSIETG-ITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVTAEYGMLPRST 129

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 130 G----SRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQADGG-- 183

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+         +   P   PV         GQ +L+   P   E  
Sbjct: 184 TRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAGQPILDLDYPEDSEAG 243

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  + G    + + +  E    S   + + +         ++EA      
Sbjct: 244 VDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296


>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
           11548]
 gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
 gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           calidifontis JCM 11548]
          Length = 246

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 12/244 (4%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   +R DGR  + +R++  QVG +    GS++   G T A V    G RE   +   L
Sbjct: 8   LLQNGLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTA-VAAVYGPREM--HPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +         + + 
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVF 124

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            EI ++DGS+ +A++  +SLAL DAG+ +      + +G+     D  ++ D++G ED+ 
Sbjct: 125 IEILQADGSTRVASLTAASLALADAGIYMRD----LVVGVSVGLVDGTVVLDLNGLEDNY 180

Query: 487 GHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           G  D  V    +    T +Q+D   G  +    + AL  A +G  ++     + L    +
Sbjct: 181 GEGDMPVGYMPNLRRFTLLQLD---GAWTREKFLEALGLAVKGAEYVYQVAREALKNKYM 237

Query: 545 QLGE 548
            + E
Sbjct: 238 AIAE 241



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 8/214 (3%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R ++++ G ++  +DG+ + +YG T  +A V   R +       P     + R Y +   
Sbjct: 24  REVQIQVGTVS-NADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVR-YHMAPF 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                R+   P+  EI IS+++  ++ P  +  +  ++   V I ++Q D   S  V S+
Sbjct: 82  STKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADG--STRVASL 139

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVSGTQD-AVLMVE 189
            AAS AL  +G+     VVG  V  ++G  VL+   L+++ G  D+ V    +     + 
Sbjct: 140 TAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMPNLRRFTLL 199

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
                 + +  L+A+       + V +   +  K
Sbjct: 200 QLDGAWTREKFLEALGLAVKGAEYVYQVAREALK 233


>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
 gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
 gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
          Length = 248

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 13/236 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +  +R+DGR    +R I  + G+L R  GS+    G  + IV V  G +E   Y  
Sbjct: 10  KLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGV-YGPKEA--YPK 66

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                        YN    +  E  R G P RR +   ++   A+   +         + 
Sbjct: 67  HSQDIDHAVVKARYNMAAFSVDERKRPG-PDRRTMEISKVISEALSSSIMIEQFPRAEID 125

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +++AL DAG+P+   V G   G V    D  I+ D+S +ED
Sbjct: 126 VYIEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKV----DGHIVLDLSKEED 181

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G  D  +A       I  +QMD   G ++E+    A          I       
Sbjct: 182 NFGEADIPMAIMPKTGEIVLLQMD---GDVTEDEFYEATSMIIEATKKISQIQRNA 234



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 91/214 (42%), Gaps = 19/214 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K+E G + R +DG+    +G   ++  V   +          D   +   Y    ++
Sbjct: 28  RPIKIEAGVLNR-ADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVVKARYNMAAFS 86

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++I  ++    +  +  + E  V I V+Q D      
Sbjct: 87  VDE------RKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAG--TR 138

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +  + AA+ AL  +G+P    VVG     ++G  VL+   +ED   +  + + +      
Sbjct: 139 IAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPKTGE 198

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +++++++ + ++ED   +A        K + +  
Sbjct: 199 IVLLQMDGD-VTEDEFYEATSMIIEATKKISQIQ 231


>gi|238797068|ref|ZP_04640571.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
 gi|238719113|gb|EEQ10926.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
          Length = 238

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 KAALAE 238



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 84/238 (35%), Gaps = 34/238 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            S+  A  AL         SG     P +G V    V  + G+ + +    ED       
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSA----- 182

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV-------IEAISKLAKMCAKE 228
            + T   V+M+E +   +      +   F H E   +       IE I +  K    E
Sbjct: 183 -AETDMNVVMME-DGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAE 238


>gi|296100489|ref|YP_003610635.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295054948|gb|ADF59686.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 238

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|50119101|ref|YP_048268.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
 gi|61215912|sp|Q6DAW2|RNPH_ERWCT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|49609627|emb|CAG73060.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
          Length = 238

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVANGKLKKNPMKGMVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL   T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTF-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  + G+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNQMVANGKLKKNPMKGMVAAVSVGIVKGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRMVEVQGTAE 205


>gi|52786716|ref|YP_092545.1| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|161760685|ref|YP_080129.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|319647246|ref|ZP_08001468.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
 gi|81609007|sp|Q65GG2|RNPH_BACLD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52349218|gb|AAU41852.1| Rph [Bacillus licheniformis ATCC 14580]
 gi|145903088|gb|AAU24491.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|317390593|gb|EFV71398.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
          Length = 246

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R ++  +  +    GS L   G T+ I   ++    +++    L G  +
Sbjct: 1   MRYDGRKNNELRPVTMDLDFITHPEGSVLITVGGTKVICNASV----EDRVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+  A+               +PI+  +A  ++G+ K+     ++
Sbjct: 117 DVIQADGGTRTASITGAFTAMALAVGRLVEKGALKEMPITDFLAATSVGIDKEKG---LI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S + +   L+ A++G   +L + 
Sbjct: 174 LDLNYQEDSAAEVDMNVVMTGEGRFVELQGTGEEATFSRSELDGLLELAEKGIAELLEKQ 233

Query: 536 SKVLSE 541
            +VL +
Sbjct: 234 KEVLGD 239



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 79/221 (35%), Gaps = 28/221 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL T G T V+     +  +     G+    +T  Y     A  +       +  + +
Sbjct: 26  GSVLITVGGTKVICNASVEDRVPPFLRGEGKGWITAEYSMLPRATNQRTIRESSK-GKIS 84

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +    K  +    +  +V+Q D        S+  A  A+ L+  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRTASITGAFTAMALAVG 142

Query: 142 ---------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQDAVLM 187
                     +P    +    V  I+ +   +L+    ED   +  +++ ++G +   + 
Sbjct: 143 RLVEKGALKEMPITDFLAATSVG-IDKEKGLILDLNYQEDSAAEVDMNVVMTG-EGRFVE 200

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++    + +     +   +         ++E   ++    A
Sbjct: 201 LQGTGEEATFSRSELDGLLELAEKGIAELLEKQKEVLGDVA 241


>gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297]
 gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297]
          Length = 239

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R+++ Q    +   GS L   GDTQ I   ++    D      + G  R
Sbjct: 1   MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASV----DSGVPRFMKGEGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++     G  + R +  GRL  R++   +        T+ I  
Sbjct: 57  GWVTAEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              PI   VA +++G+ +D      +
Sbjct: 117 DVIQADGGTRTASITGAFVALSDAINGMLAEGTLKKNPIKHNVAAVSVGIWQDT----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V    + G   +Q   +      + +   L  A++G   +    
Sbjct: 173 LDLDYAEDSTAETDLNVVLASNGGFVEIQGTAEGEPFMPDQLKAMLDLAEKGGRDLFEIQ 232

Query: 536 SKVLSES 542
           ++ L+E+
Sbjct: 233 NRALTEA 239



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 87/234 (37%), Gaps = 36/234 (15%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL ++G+T V+ T   D  +     G+    +T  Y     A G        R 
Sbjct: 22  KHAEGSVLVSFGDTQVICTASVDSGVPRFMKGEGRGWVTAEYGMLPRATGSRNQREAAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL- 138
            + T   + I R+I RS+R          N   +  +V+Q D        S+  A  AL 
Sbjct: 81  GKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDCDVIQADGG--TRTASITGAFVALS 138

Query: 139 -MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
             ++G+         P +  V    V       VL+    ED   +  L++ ++ +    
Sbjct: 139 DAINGMLAEGTLKKNPIKHNVAAVSVGIWQDTAVLDLDYAEDSTAETDLNVVLA-SNGGF 197

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
           + ++  A              G       ++A+  LA+   ++   I ++  ++
Sbjct: 198 VEIQGTAE-------------GEPFMPDQLKAMLDLAEKGGRDLFEIQNRALTE 238


>gi|171315534|ref|ZP_02904770.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|172059924|ref|YP_001807576.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
 gi|226736891|sp|B1YUN3|RNPH_BURA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171099371|gb|EDT44109.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|171992441|gb|ACB63360.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
          Length = 246

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFLRDRGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     + + L 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVY----EGVPLL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S   AA  L+  P    V    V    G  +L+    ED      +++ ++G     +
Sbjct: 145 AVSKLIAAGKLARSPITDHVAAISVGVYEGVPLLDLDYAEDSRCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +    +    +++   
Sbjct: 204 EVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQK 238


>gi|115350911|ref|YP_772750.1| ribonuclease PH [Burkholderia ambifaria AMMD]
 gi|122323780|sp|Q0BHF7|RNPH_BURCM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115280899|gb|ABI86416.1| RNAse PH [Burkholderia ambifaria AMMD]
          Length = 246

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFLRDRGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     + + L 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVY----EGVPLL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S   AA  L+  P    V    V    G  +L+    ED      +++ ++G     +
Sbjct: 145 AVSKLIAAGKLARSPITDHVAAISVGVYEGVPLLDLDYAEDSRCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +    +    +++   
Sbjct: 204 EVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQK 238


>gi|329847441|ref|ZP_08262469.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
 gi|328842504|gb|EGF92073.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
          Length = 250

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 24/245 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R   R  + +R+++ + G+ +   GS L   G T+ +V  ++ T         L G 
Sbjct: 11  KTIRPSNRKPDQMRNVTLETGVTRYAEGSCLVTFGHTRVLVTASVETG----VPSFLKGK 66

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP +T   SR     G  S R     RL  R++  V+   A     + +
Sbjct: 67  GQGWVTAEYGMLPRSTHTRSRREAATGKQSGRTQEIQRLIGRSMRAVIDLKALGERQITL 126

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL  A             P+   VA I+ G+     + +
Sbjct: 127 DCDVLQADGGTRTASITGAWVALAAACDKLVADKIIEKSPLLDQVAAISCGIF----EAV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+  DED     D     T SG    +Q   +  G S          A +G   +  
Sbjct: 183 PVLDLDYDEDSNAETDANFVITGSGHAVEIQATGEKRGFSRQEFDTLYDLALKGTSELFA 242

Query: 534 EMSKV 538
             ++V
Sbjct: 243 LQNQV 247



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 78/231 (33%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           R + LETG + R ++G+ L T+G T VL T        S   G+    +T  Y     + 
Sbjct: 24  RNVTLETG-VTRYAEGSCLVTFGHTRVLVTASVETGVPSFLKGKGQGWVTAEYGMLPRST 82

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 83  ----HTRSRREAATGKQSGRTQEIQRLIGRSMRAVIDLKALGERQITLDCDVLQADGG-- 136

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +   P    V            VL+   DED   +
Sbjct: 137 TRTASITGAWVALAAACDKLVADKIIEKSPLLDQVAAISCGIFEAVPVLDLDYDEDSNAE 196

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
              +  ++G+  AV +    E    S                 +    +++
Sbjct: 197 TDANFVITGSGHAVEIQATGEKRGFSRQEFDTLYDLALKGTSELFALQNQV 247


>gi|144897368|emb|CAM74232.1| RNase PH [Magnetospirillum gryphiswaldense MSR-1]
          Length = 241

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 24/233 (10%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R  GR  + +R I  + G  +   GS L   GDT  +   ++    +E+    L  T 
Sbjct: 2   SHRPSGRAFDQLRVIRLETGFSRHAEGSCLAKFGDTHVLCTASV----EERVPPFLRNTG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP +T   +      G  S R     RL  R++  V   TA     +++ 
Sbjct: 58  KGWVTAEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLD 117

Query: 427 SEITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL             + VP+   VA I+ G+     +   
Sbjct: 118 CDVLQADGGTRTASITGAWVALHLAFQKLVEAGKLSAVPLIDQVAAISCGIY----EGQA 173

Query: 476 LSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           + D+   ED     D     T   GI  +Q   +    S +     L+ A++G
Sbjct: 174 VLDLDYPEDSSAQADANFVLTGTGGIVEVQGTAEERPFSRDQFTQLLELAEKG 226



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 26/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R ++LETG  +R ++G+ LA +G+T VL T   +  +           +T  Y     + 
Sbjct: 14  RVIRLETG-FSRHAEGSCLAKFGDTHVLCTASVEERVPPFLRNTGKGWVTAEYGMLPRST 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
                     + + +     I R+I RS+R +       E Q+    +V+Q D       
Sbjct: 73  -HTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL            LS +P    V         GQ VL+   P     Q   
Sbjct: 130 ASITGAWVALHLAFQKLVEAGKLSAVPLIDQVAAISCGIYEGQAVLDLDYPEDSSAQADA 189

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           +  ++GT   ++ V+  A +   S D     +         +     K   + 
Sbjct: 190 NFVLTGT-GGIVEVQGTAEERPFSRDQFTQLLELAEKGVTELALLQKKAVGLA 241


>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
 gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
          Length = 242

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 12/241 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R DGR  E +R I  +VG+L+   GS++   G T  ++    G RE           
Sbjct: 11  DGRRHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKT-VVLAAVYGPREV--VPRHEEIV 67

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R      Y  L  +T    +  APSRREI   ++ R A+ P +  +      + I  E+
Sbjct: 68  DRAVIRCRYRMLSFSTLGERKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEV 127

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             ++G +  A +  +SLAL DAG+P++  VA +A+G +    D +I+ D+   ED  G  
Sbjct: 128 INANGGTRTAGITAASLALADAGIPLADLVAAVAVGKI----DGVIVLDLDELEDMYGEA 183

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           D  +A     + IT +Q++     +++     AL+   +G   I     + L    +++ 
Sbjct: 184 DMPIAAMPSLNRITMLQLNGV---LTKEEFKAALKLGLQGIKQIYELQKETLRRKYVEVE 240

Query: 548 E 548
            
Sbjct: 241 T 241



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+++E G + + +DG+ +   G+TVVLA V   R +        D   +   Y+  +++
Sbjct: 24  RPIRMEVGVL-KNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIRCRYRMLSFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                    R+   P+  EI +S++I  ++ P         T + I V   +        
Sbjct: 83  T-----LGERKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVINANGGTRTA 137

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSG--TQDAVL 186
            + AAS AL  +G+P    V    V  I+G  VL+   L++  G  D+ ++   + + + 
Sbjct: 138 GITAASLALADAGIPLADLVAAVAVGKIDGVIVLDLDELEDMYGEADMPIAAMPSLNRIT 197

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           M++L    L+++    A+  G    K + E   +
Sbjct: 198 MLQLNG-VLTKEEFKAALKLGLQGIKQIYELQKE 230


>gi|261341748|ref|ZP_05969606.1| hypothetical protein ENTCAN_08227 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316116|gb|EFC55054.1| tRNA nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316]
          Length = 238

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLSLLALARGGIESIVTTQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105]
 gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105]
          Length = 243

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M   + R DGR+   +R+IS +    +   GS +   GDT  +   ++    +++    L
Sbjct: 1   MNATQARPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSV----EDKVPGFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G  +      Y  LP +T          G  S R     RL  RA+   +        T
Sbjct: 57  KGKNQGWLTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L+I  ++ ++DG +  A++ G+ +A+ DA             PI + VA +++G+V    
Sbjct: 117 LKIDCDVIQADGGTRTASITGAMVAVADAIGKLIANGALPENPIKQFVAAVSVGVV---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           +  ++ D++ DED     D  V  T+  G   +Q   +    S   +   L  A  G + 
Sbjct: 173 NGQVVLDLNYDEDSTCETDLNVVMTEKGGFVEVQGTAEGDAFSREELNGMLDSAAAGIIE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRLQKAA 240



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 22/225 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + LE     + ++G+V+  +G+T VL T   +  +     G++   LT  Y     + 
Sbjct: 17  RNISLERN-YTKHAEGSVMVRFGDTHVLCTCSVEDKVPGFLKGKNQGWLTAEYGMLPRST 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                    R  + +     I R+I R++R         E   ++  +V+Q D  +    
Sbjct: 76  HSRMDREAAR-GKQSGRTQEIQRLIGRALRAAVDLNKLGERTLKIDCDVIQADGGTRTAS 134

Query: 129 V--SMVAASAAL-------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           +  +MVA + A+        L   P +  V    V  +NGQ VL+   DED   +  L++
Sbjct: 135 ITGAMVAVADAIGKLIANGALPENPIKQFVAAVSVGVVNGQVVLDLNYDEDSTCETDLNV 194

Query: 177 FVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            ++  +   + V+   E +  S + +   +         ++    
Sbjct: 195 VMT-EKGGFVEVQGTAEGDAFSREELNGMLDSAAAGIIELVRLQK 238


>gi|330813340|ref|YP_004357579.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486435|gb|AEA80840.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
          Length = 237

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           + R +  +R I      ++    S L   GDT  +   ++    +E+    L G+ +   
Sbjct: 3   NDRKNLELRKIEITTDFIKNADASCLIKSGDTHVVCTASI----EEKVPRWLKGSGKGWV 58

Query: 375 MMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              Y  LP +T E  R     G    R     RL  R++   +       Y + I  ++ 
Sbjct: 59  TAEYGMLPRSTHERMRRESSVGKVGGRTSEIQRLIGRSLRASMNLKLLGEYLITIDCDVL 118

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G  +AL                PI   VA I+ G+V        L D+
Sbjct: 119 QADGGTRTASITGGFVALKKCIDLMIKRKQINHNPIKSYVAAISCGIVNGE----FLMDL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +ED    +D      D G I  +Q+  +    SE   +  L+ +K     I+    K 
Sbjct: 175 DYEEDSQADVDSNYVMNDKGDIIELQLTGEQTTCSEEEFMKMLRHSKSSIAEIITLQKKA 234

Query: 539 LSE 541
           LSE
Sbjct: 235 LSE 237



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 87/231 (37%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T  I + +D + L   G+T V+ T   +  +     G     +T  Y     + 
Sbjct: 11  RKIEITTDFI-KNADASCLIKSGDTHVVCTASIEEKVPRWLKGSGKGWVTAEYGMLPRST 69

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
            +     +RRE    +       I R+I RS+R   +     E    +  +V+Q D    
Sbjct: 70  HE----RMRRESSVGKVGGRTSEIQRLIGRSLRASMNLKLLGEYLITIDCDVLQADGG-- 123

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
               S+     AL            ++  P +  V       +NG+++++   +ED Q  
Sbjct: 124 TRTASITGGFVALKKCIDLMIKRKQINHNPIKSYVAAISCGIVNGEFLMDLDYEEDSQAD 183

Query: 174 LD-LFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +D  +V   +  ++ ++L   Q +  E+  +  +    +    +I    K 
Sbjct: 184 VDSNYVMNDKGDIIELQLTGEQTTCSEEEFMKMLRHSKSSIAEIITLQKKA 234


>gi|292669539|ref|ZP_06602965.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
 gi|292648748|gb|EFF66720.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
          Length = 248

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 21/244 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R D R ++ +R +  + G  +   GS+L   G T+ +   T+    +E+    L G+  
Sbjct: 2   PRRDLRRTDQLRPVHIERGYQRYPAGSALVETGHTRVVCAATV----EERVPFFLKGSGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP A  E +      G  S R     RL  RA+  V+        T+ I  
Sbjct: 58  GWVTAEYAMLPGAGAERTAREAVRGRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAG---------VPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A+V G+ +AL++A           P+   VA +++G+  +G     L D
Sbjct: 118 DVLQADGGTRTASVTGAFVALVEACATFYTKHGIFPVRDYVAAVSVGIDTEG---TPLLD 174

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           I  +ED    +D  +  T +G    +Q   +    S   M   L   +RG   ++     
Sbjct: 175 ICYEEDSSAMVDMNLVMTGAGEFVEVQGTGEGRSFSRAEMNALLDLGERGIRELIEHQKT 234

Query: 538 VLSE 541
            L E
Sbjct: 235 ALGE 238



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 31/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+ +E G   R   G+ L   G T V+     +    +   FF        +T  Y   
Sbjct: 13  RPVHIERG-YQRYPAGSALVETGHTRVVCAATVE----ERVPFFLKGSGTGWVTAEYAML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
             A  +       R  R +     I R+I R++R +       E    +  +V+Q D   
Sbjct: 68  PGAGAERTAREAVR-GRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDCDVLQADGG- 125

Query: 125 SPHVVSMVAASAAL--------MLSGL-PFEGPVVGAQVD-YINGQYVLNPRLDEDQG-- 172
                S+  A  AL           G+ P    V    V     G  +L+   +ED    
Sbjct: 126 -TRTASVTGAFVALVEACATFYTKHGIFPVRDYVAAVSVGIDTEGTPLLDICYEEDSSAM 184

Query: 173 -SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             ++L ++G  + V +    E    S   +   +  G    + +IE   
Sbjct: 185 VDMNLVMTGAGEFVEVQGTGEGRSFSRAEMNALLDLGERGIRELIEHQK 233


>gi|288942595|ref|YP_003444835.1| ribonuclease PH [Allochromatium vinosum DSM 180]
 gi|288897967|gb|ADC63803.1| ribonuclease PH [Allochromatium vinosum DSM 180]
          Length = 241

 Score =  156 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 86/246 (34%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  +  R I    G  +   GS L   GDT+ +   ++  R        L G  +
Sbjct: 1   MRPSQRRPDEARPICFTRGFTRHAEGSVLVEFGDTRVLCTASVEPR----VPPFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE        G    R +   RL  RA+   +   A    T+ +  
Sbjct: 57  GWITAEYGMLPRSTGERMPREAARGKQGGRTLEIQRLIGRALRAAVYLNALGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL +              PI   +A +++G+ +       +
Sbjct: 117 DVLQADGGTRTAAITGAWVALREAIDHLLASGQLTADPIKTQIAAVSVGIYQGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +     G    +Q   +    +   +   L+    G   I    
Sbjct: 173 LDLDYAEDSSAETDMNLVMDGEGRFIEVQGTAEGHPFTRAELDALLELGAAGIRSIQAAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 RAALED 238



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 24/225 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+    G   R ++G+VL  +G+T VL T   +  +     G+    +T  Y     + 
Sbjct: 12  RPICFTRG-FTRHAEGSVLVEFGDTRVLCTASVEPRVPPFLKGKGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G+       R  +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  GERMPREAAR-GKQGGRTLEIQRLIGRALRAAVYLNALGERTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            L+  P +  +    V    G  VL+    ED   +  +
Sbjct: 128 AAITGAWVALREAIDHLLASGQLTADPIKTQIAAVSVGIYQGTPVLDLDYAEDSSAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +L + G    + +    E +  +   +   +  G    + +  A 
Sbjct: 188 NLVMDGEGRFIEVQGTAEGHPFTRAELDALLELGAAGIRSIQAAQ 232


>gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4]
 gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4]
          Length = 261

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 91/251 (36%), Gaps = 18/251 (7%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +      R DGR  + +RD++   G      GS L   G T+ +   ++     E     
Sbjct: 1   MTSSNFHRADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASVT----EGVPRW 56

Query: 366 LSGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             G+        Y  LP AT E S      G    R     RL  R++   +  +A    
Sbjct: 57  RKGSGLGWLTAEYAMLPAATHERSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGEN 116

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMD--AGVPISKPVAG-----IAMGLVKDGDDFI 474
           T+ +  ++ ++DG +  A + G+ +AL D    +  S  V G         +     D  
Sbjct: 117 TIALDCDVLQADGGTRTAAITGAYVALADAITWLQSSGAVTGNPLTGAVAAVSVGVVDGH 176

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMA--LQQAKRGRLHI 531
           +L D+  +ED    +D  V  TD G +  +Q   +      +++       QA   RL  
Sbjct: 177 VLCDLPYEEDSRAEVDMNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFA 236

Query: 532 LNEMSKVLSES 542
           L   +      
Sbjct: 237 LQREALAAPYP 247



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 85/246 (34%), Gaps = 28/246 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R + +  G  +  + G+VL T+G+T V+ T      +   + G     LT  Y     A 
Sbjct: 18  RDVTITRGFTSHPA-GSVLVTFGQTRVMCTASVTEGVPRWRKGSGLGWLTAEYAMLPAAT 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G    R  +       ISR++ RS+R         E  +    +V+Q D       
Sbjct: 77  HERSGRESVR-GKVGGRTHEISRLVGRSLRACIDLSALGENTIALDCDVLQADGG--TRT 133

Query: 129 VSMVAASAALMLSGLPFEGPVVGA-----------QVDYINGQYVLN--PRLDEDQGSLD 175
            ++  A  AL  + + +                      +   +VL   P  ++ +  +D
Sbjct: 134 AAITGAYVALADA-ITWLQSSGAVTGNPLTGAVAAVSVGVVDGHVLCDLPYEEDSRAEVD 192

Query: 176 LFVSGTQ-DAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           + V  T    ++ V+  A       DV+   +      C+ +     +   + A  P  +
Sbjct: 193 MNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFALQRE--ALAAPYPGEL 250

Query: 233 DSKDFS 238
            S   +
Sbjct: 251 PSPPAA 256


>gi|227551340|ref|ZP_03981389.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257887545|ref|ZP_05667198.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257896040|ref|ZP_05675693.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257898668|ref|ZP_05678321.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|293378788|ref|ZP_06624945.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
 gi|227179551|gb|EEI60523.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257823599|gb|EEV50531.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257832605|gb|EEV59026.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257836580|gb|EEV61654.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|292642581|gb|EFF60734.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
          Length = 451

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 126/318 (39%), Gaps = 30/318 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATV----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ I  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALRLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    I     +    G   N M+   + A    +   
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                       +  E T  + I    P +    RN+    G  ++ +++      ++++
Sbjct: 234 KHALLTEFAQDNERIEETKTIIIATRNPGKAEEFRNMFKEAGYHVKTLLDYPELP-DVEE 292

Query: 590 DGTVKIASSSLAEIEAAR 607
            G+    ++ L     A+
Sbjct: 293 TGSTFEENARLKAETIAQ 310



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 103/274 (37%), Gaps = 44/274 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    +  +V+Q D    
Sbjct: 71  S----TRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS 173
               S+  A  AL            LS  P +  +    V    +G  V +    ED  +
Sbjct: 125 TRTASITGAFVALRLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAA 184

Query: 174 L-DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           L D+ +  T+    + ++    + +   + + + + FG N  + +I+          K  
Sbjct: 185 LVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ--------KHA 236

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
           ++ +    ++  EE   +I     ++   P K  
Sbjct: 237 LLTEFAQDNERIEETKTII-----IATRNPGKAE 265


>gi|295095228|emb|CBK84318.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 238

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVAAGKLKTNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|238760457|ref|ZP_04621595.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
 gi|238783915|ref|ZP_04627932.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
 gi|238701352|gb|EEP93931.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
 gi|238715154|gb|EEQ07149.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
          Length = 238

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAQ 238



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            S+  A  AL         SG     P +G V    V  + G+ + +    ED       
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSA----- 182

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV-------IEAISKLAKMC 225
            + T   V+M+E +   +      +   F H E   +       IE I +  K  
Sbjct: 183 -AETDMNVVMME-DGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAA 235


>gi|293554040|ref|ZP_06674640.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
 gi|291601822|gb|EFF32074.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
          Length = 451

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 126/318 (39%), Gaps = 30/318 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    I     +    G   N M+   + A    +   
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                       +  E T  + I    P +    RN+    G  ++ +++      ++++
Sbjct: 234 KHALLTEFAQNDERIEETKTIIIATRNPGKAEEFRNMFKEAGYHVKTLLDYPELP-DVEE 292

Query: 590 DGTVKIASSSLAEIEAAR 607
            G+    ++ L     A+
Sbjct: 293 TGSTFEENARLKAETIAQ 310



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 104/274 (37%), Gaps = 44/274 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  S----TRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS 173
               S+  A  AL            LS  P +  +    V    +G  V +    ED  +
Sbjct: 125 TRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAA 184

Query: 174 L-DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           L D+ +  T+    + ++    + +   + + + + FG N  + +I           KE 
Sbjct: 185 LVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLI-----------KEQ 233

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
                 +F++ +E + +   + + ++   P K  
Sbjct: 234 KHALLTEFAQNDERIEE--TKTIIIATRNPGKAE 265


>gi|69246345|ref|ZP_00603901.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
 gi|68195298|gb|EAN09749.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
          Length = 451

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 126/318 (39%), Gaps = 30/318 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    I     +    G   N M+   + A    +   
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                       +  E T  + I    P +    RN+    G  ++ +++      ++++
Sbjct: 234 KHALLTEFAQNDERIEETKTIIIATRNPGKAEEFRNMFKEAGYHVKTLLDYPELP-DVEE 292

Query: 590 DGTVKIASSSLAEIEAAR 607
            G+    ++ L     A+
Sbjct: 293 TGSTFEENARLKAETIAQ 310



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 104/274 (37%), Gaps = 44/274 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  S----TRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS 173
               S+  A  AL            LS  P +  +    V    +G  V +    ED  +
Sbjct: 125 TRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAA 184

Query: 174 L-DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           L D+ +  T+    + ++    + +   + + + + FG N  + +I           KE 
Sbjct: 185 LVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLI-----------KEQ 233

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
                 +F++ +E + +   + + ++   P K  
Sbjct: 234 KHALLTEFAQNDERIEE--TKTIIIATRNPGKAE 265


>gi|293572585|ref|ZP_06683559.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
 gi|291607368|gb|EFF36716.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
          Length = 451

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 126/318 (39%), Gaps = 30/318 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATV----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ I  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALRLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    I     +    G   N M+   + A    +   
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                       +  E T  + I    P +    RN+    G  ++ +++      ++++
Sbjct: 234 KHALLTEFAQDNERIEETKTIIIATRNPGKAEEFRNMFKEAGYHVKTLLDYPELP-DVEE 292

Query: 590 DGTVKIASSSLAEIEAAR 607
            G+    ++ L     A+
Sbjct: 293 TGSTFEENARLKAETIAQ 310



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 103/274 (37%), Gaps = 44/274 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    +  +V+Q D    
Sbjct: 71  S----TRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS 173
               S+  A  AL            LS  P +  +    V    +G  V +    ED  +
Sbjct: 125 TRTASITGAFVALRLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAA 184

Query: 174 L-DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           L D+ +  T+    + ++    + +   + + + + FG N  + +I+          K  
Sbjct: 185 LVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ--------KHA 236

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
           ++ +    ++  EE   +I     ++   P K  
Sbjct: 237 LLTEFAQDNERIEETKTII-----IATRNPGKAE 265


>gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
 gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
 gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
 gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08]
          Length = 252

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 14  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 69

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 70  WVTAEYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCD 129

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA           G PI+  V  I++G+V      + + 
Sbjct: 130 VLQADGGTRTASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVV----GGVPML 185

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + SG    +Q   +    + +++   L  A  G + +    S
Sbjct: 186 DLAYEEDSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQS 245

Query: 537 KV 538
           +V
Sbjct: 246 EV 247



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 24  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 82

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   RR  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 83  NERSGRESRR-GKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQADGG--TRT 139

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +           G P  G V    V  + G  +L+   +ED      +
Sbjct: 140 ASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVVGGVPMLDLAYEEDSRADTDM 199

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ +SG+ D V  ++  A       D++ + +      C  + +A S++
Sbjct: 200 NVVMSGSGDFV-EIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEV 247


>gi|153844108|ref|ZP_01993625.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|149745259|gb|EDM56510.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
          Length = 162

 Score =  156 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 214 VIEAISKLAKMCAKEPI-VIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           +I AI++     A      +  ++ + L+ +++++ +  L  +  I EK  R  +I ++ 
Sbjct: 3   LIHAINEFKAEVATPAWDWVAPEENTALKTKIAELAEAKLVEAYQITEKMARYDRIHEIA 62

Query: 273 KKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLL 332
            ++     ++    +  EI ++F D++  VVR  ++    R+D R+ + VR +  + G+L
Sbjct: 63  AEVNEALLAQDPEADTKEIHTIFHDLEKTVVRRSIIAGNPRIDSREKDMVRALDVRTGVL 122

Query: 333 QRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
            RTHGS+LF RG+TQA+V  TLGT+ D Q +D L+G +++
Sbjct: 123 PRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 162


>gi|261823588|ref|YP_003261694.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
 gi|261607601|gb|ACX90087.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
          Length = 238

 Score =  156 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVAKGKLKKNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL   T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTF-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNQMVAKGKLKKNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRMVEVQGTAE 205


>gi|150395238|ref|YP_001325705.1| ribonuclease PH [Sinorhizobium medicae WSM419]
 gi|166228322|sp|A6U5E0|RNPH_SINMW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150026753|gb|ABR58870.1| ribonuclease PH [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  156 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +++    L    +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASL----EDKVPGWLRNGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE  R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGERMRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA--GVP----------ISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D    +           +   VA I+ G+         
Sbjct: 117 DVIQADGGTRTASITGAWIALHDCLKWMEARNMVKLEKVLKDHVAAISCGIFASQP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T S G+  +Q   +    SE      +  AK G   ++  
Sbjct: 173 VVDLDYLEDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELIEM 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKLAIA 238



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 33/231 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS----LKDGQDFFPLTVNYQERTYA 69
           R +  E    ++ ++G+ L  +G+T VL T   +      L++G   + +T  Y     A
Sbjct: 12  RKVSFERN-FSKHAEGSCLVRFGDTHVLCTASLEDKVPGWLRNGGKGW-VTAEYGMLPRA 69

Query: 70  VGKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLES 124
            G+     +RRE    + +     I R+I RS+R +       + +  V  +V+Q D   
Sbjct: 70  TGER----MRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISVDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                S+  A  AL                   +  V          Q V++    ED  
Sbjct: 125 -TRTASITGAWIALHDCLKWMEARNMVKLEKVLKDHVAAISCGIFASQPVVDLDYLEDSA 183

Query: 171 -QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            +   +  ++G+   V +    E    SE+     ++   N    +IE   
Sbjct: 184 AETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELIEMQK 234


>gi|301168926|emb|CBW28521.1| ribonuclease PH (pseudogene) [Haemophilus influenzae 10810]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++GL         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  K 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKA 235


>gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4]
 gi|189043764|sp|A5G3S1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +E++R++      L+   GS L   GDT+ I   ++    +      L G   
Sbjct: 1   MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASV----EGSVPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R     RL  R++  V+        ++ I  
Sbjct: 57  GWVTAEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           A +P+ + VA +++G+V    D   L
Sbjct: 117 DVIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIV----DGTPL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D     T S     +Q   +    +   M      A  G   +    
Sbjct: 173 LDLNYVEDSSAEVDMNFVMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQ 232

Query: 536 SKVLSE 541
            + L +
Sbjct: 233 KEALCQ 238



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T V+ T   + S+     G+    +T  Y     A 
Sbjct: 12  REVKI-TRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                     + +       I R+I RS+R +       E    +  +V+Q D       
Sbjct: 71  -HTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL            L+ +P +  V    V  ++G  +L+    ED      +
Sbjct: 128 ASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIVDGTPLLDLNYVEDSSAEVDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  ++ +   V +    EA   + + +        +  K + +   + 
Sbjct: 188 NFVMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKEA 235


>gi|8102038|gb|AAF72714.1|AF263927_2 ribonuclease PH [Carnobacterium sp. St2]
          Length = 364

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 23/258 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R ++ +   L+   GS L   GDT+ I   T+  +        + G  +
Sbjct: 1   MRTNTRKNDELRLVTIETNYLKHPEGSVLVSFGDTKVICNATVEPK----VPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +   A       R +   RL  R++  V+         + +  
Sbjct: 57  GWVHAEYAMLPRATNTRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L+D+G     P+ + +A +++G+ K G+    +
Sbjct: 117 DVIQADGGTRTASITGAFVALKMAIQTLLDSGQLTEDPVKENIAAVSVGITKQGE---AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  T +G    +Q   +    S + ++  L+  K+G   +    
Sbjct: 174 LDLDYLEDSSAAVDMNLFMTANGEFFELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQ 233

Query: 536 SKVLSESRLQLGEFTPRV 553
           ++ L ES+++     P +
Sbjct: 234 TQALKESKVKKAIQAPVM 251



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 108/300 (36%), Gaps = 42/300 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET  + +  +G+VL ++G+T V+     +  +     GQ    +   Y     A 
Sbjct: 12  RLVTIETNYL-KHPEGSVLVSFGDTKVICNATVEPKVPPFMRGQGKGWVHAEYAMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + T   + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 71  N-TRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQG---S 173
            S+  A  AL            L+  P +  +    V     G+ VL+    ED      
Sbjct: 128 ASITGAFVALKMAIQTLLDSGQLTEDPVKENIAAVSVGITKQGEAVLDLDYLEDSSAAVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           ++LF++   +    ++    + +   D +++ +  G      + +  ++  K        
Sbjct: 188 MNLFMTANGEF-FELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQTQALKE------- 239

Query: 232 IDSKDFSKLEEEMSQMIKED-LRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGE 290
                 SK+++ +   +  D + ++   P K    + +   K   V     ++    E E
Sbjct: 240 ------SKVKKAIQAPVMTDTILIATKNPGKAREFEALFAKKGLFVKTLL-DYPEIPEVE 292


>gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1]
 gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V    D   L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNNLVAAGKLKTNPMKGMVAAVSVGIV----DGEAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  ++G+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNNLVAAGKLKTNPMKGMVAAVSVGIVDGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
 gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
          Length = 245

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 95/247 (38%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R DGR  + +R +           GS L   G+T+ +   ++    +        
Sbjct: 4   MTDFSRADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV----EFGVPRFKK 59

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y+ LP AT +        G    R     RL  R++   +  +     T+
Sbjct: 60  DSGEGWLTAEYSMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTI 119

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
           ++  ++ ++DG +  A++ G+ +AL DA           G P+  PVA +++G++    D
Sbjct: 120 QLDCDVLQADGGTRTASITGAYVALADAIEYLKSEGVVPGEPLLDPVAAVSVGII----D 175

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             I  D+  +ED    +D  V   + G    +Q   + G    + +   L  A++G   +
Sbjct: 176 GQICLDLPYEEDSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRDELNSMLDVAQKGCEEL 235

Query: 532 LNEMSKV 538
           +      
Sbjct: 236 IEAQKAA 242



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL  +G T V+ T          K       LT  Y     A   ++P   ++   + 
Sbjct: 33  GSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTAEYSMLPAATHDRMPRESMK--GKV 90

Query: 85  TENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR++ RS+R      +  +N  Q+  +V+Q D        S+  A  AL  + 
Sbjct: 91  KGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQADGG--TRTASITGAYVALADAI 148

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                     G P   PV    V  I+GQ  L+   +ED   +  L++ +    D V  +
Sbjct: 149 EYLKSEGVVPGEPLLDPVAAVSVGIIDGQICLDLPYEEDSRAEVDLNVVMQEGGDFV-EI 207

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +          D +   +      C+ +IEA  
Sbjct: 208 QGTGEHGLFGRDELNSMLDVAQKGCEELIEAQK 240


>gi|254362020|ref|ZP_04978149.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
 gi|153093571|gb|EDN74545.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  VR+I       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATV----EESVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVAAISVGIVAGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   ++   
Sbjct: 173 CDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQ 232

Query: 536 SKVLSE 541
            K L+E
Sbjct: 233 RKALAE 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +GET VL     + S+     GQ    +T  Y     A 
Sbjct: 12  REIKI-TRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVTAEYGMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +      +   +     + I R+I RS+R +       E    V  +V+Q D      
Sbjct: 71  HSRTQREAAK--GKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            L   P +G V    V  + G+ V +    ED   +  
Sbjct: 127 TASITGACVALYDAMNKLVANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYLEDSNAETD 186

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ +      ++ V+   E    S   +L  +         ++EA  K    
Sbjct: 187 MNVVMV-EDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238


>gi|88705452|ref|ZP_01103163.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
 gi|88700542|gb|EAQ97650.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
          Length = 269

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  + +RDIS +        GS L   G+T+ I   ++    ++     L G   
Sbjct: 31  PRPSGRAPDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASV----EDSVPRFLRGKNS 86

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G    R     RL  R++   +  +    +T+ +  
Sbjct: 87  GWITAEYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDC 146

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D           +  P+   VA +++G+ +       +
Sbjct: 147 DVIQADGGTRTASITGAFVALVDAINGLQRDKKISTDPLRHFVASVSVGVYQGE----AV 202

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G    +Q   +    S   +   L  A  G   +++  
Sbjct: 203 LDLDYPEDSKADTDLNVVMAEGGEFIEVQGTAEAAPFSRTDLDKMLDLASGGIATLIDCQ 262

Query: 536 SKV 538
              
Sbjct: 263 RAA 265



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQ----SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQER 66
           R + +E     RQ    ++G+VL ++G T V+ T   + S+     G++   +T  Y   
Sbjct: 42  RDISIE-----RQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITAEYGML 96

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
             + G   G    R  +       I R+I RS+R      K  ++   +  +V+Q D   
Sbjct: 97  PRSTGSRMGREAAR-GKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQADGG- 154

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
                S+  A  AL+           +S  P    V    V    G+ VL+   P   + 
Sbjct: 155 -TRTASITGAFVALVDAINGLQRDKKISTDPLRHFVASVSVGVYQGEAVLDLDYPEDSKA 213

Query: 171 QGSLDLFVS-GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
              L++ ++ G +   +    EA   S   +   +         +I+  
Sbjct: 214 DTDLNVVMAEGGEFIEVQGTAEAAPFSRTDLDKMLDLASGGIATLIDCQ 262


>gi|218232088|ref|YP_002369288.1| ribonuclease PH [Bacillus cereus B4264]
 gi|226736886|sp|B7HEB3|RNPH_BACC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218160045|gb|ACK60037.1| tRNA nucleotidyltransferase [Bacillus cereus B4264]
          Length = 245

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGREKIELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  ++G+V++     ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQG---VV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   +++  
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +    V  +  Q  VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         +I+   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEA 236


>gi|152998356|ref|YP_001343191.1| ribonuclease PH [Marinomonas sp. MWYL1]
 gi|189043766|sp|A6W3H7|RNPH_MARMS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839280|gb|ABR73256.1| ribonuclease PH [Marinomonas sp. MWYL1]
          Length = 239

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ I   T+ +         L G  +
Sbjct: 1   MRPSGREADQLRPLKITRNFTKHAEGSVLIECGDTKVICTATVVSG----VPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +        T+ I  
Sbjct: 57  GWITAEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL D              PI   +A I++G+       + +
Sbjct: 117 DVIQADGGTRTASITGGFVALADAMRVLVENKKVKENPIVSQIAAISVGVY----KGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D  G   +Q   +    S+  M+  L  A++G   I+   
Sbjct: 173 LDLDYPEDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIMEAQ 232

Query: 536 SKV 538
              
Sbjct: 233 RAA 235



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 26/226 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RPLK+ T    + ++G+VL   G+T V+ T  V     +   G+    +T  Y     + 
Sbjct: 12  RPLKI-TRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                    R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+     AL  +             P    +    V    G  VL+   P     +  +
Sbjct: 128 ASITGGFVALADAMRVLVENKKVKENPIVSQIAAISVGVYKGVPVLDLDYPEDSNAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +  +   +   + ++   E    S++ ++  +         ++EA 
Sbjct: 188 N-VIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIMEAQ 232


>gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 24/246 (9%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           + R  + +R +  +   ++   GS L   GDT+ I   T+    + +    L G  +   
Sbjct: 3   ENRKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATI----ESKVPSFLKGEGKGWV 58

Query: 375 MMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              Y+ LP AT   +      G    R     RL  R++  ++        T+ +  ++ 
Sbjct: 59  TAEYSMLPRATESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ ++++            + +P+   +A I++G+V D     I+ D+
Sbjct: 119 QADGGTRTASITGAFVSMVLALNKLVEEKELSELPVEGYLAAISVGIVNDE----IMLDL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            G ED     D  VAGTD G    +Q   +    S+N M   L  A++G   ++   S+ 
Sbjct: 175 DGKEDFQADTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQSQA 234

Query: 539 LSESRL 544
           LSE   
Sbjct: 235 LSEIYP 240



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 20/234 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ET  + +  +G+VL T G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 11  RPVKIETDFV-KHPEGSVLITVGDTKVICSATIESKVPSFLKGEGKGWVTAEYSMLPRAT 69

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
            +        + +       I R+I RS+R + +     E  +    +V+Q D  +    
Sbjct: 70  -ESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCDVIQADGGTRTAS 128

Query: 129 VSMVAASAALM---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFV 178
           ++    S  L          LS LP EG +    V  +N + +L+    ED Q   D+ V
Sbjct: 129 ITGAFVSMVLALNKLVEEKELSELPVEGYLAAISVGIVNDEIMLDLDGKEDFQADTDMNV 188

Query: 179 SGTQDAVLMVELEANQL---SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           +GT     +      +    S++ +   + +       ++E  S+        P
Sbjct: 189 AGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQSQALSEIYPPP 242


>gi|310643658|ref|YP_003948416.1| ribonuclease ph:ham1-like protein [Paenibacillus polymyxa SC2]
 gi|309248608|gb|ADO58175.1| Ribonuclease PH:Ham1-like protein [Paenibacillus polymyxa SC2]
          Length = 253

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR+ + +R +    G+ +   GS     G+T+ I   T+    +E+    + G  + 
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATV----EERVPPFMKGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   ++     G  + R +   RL  RA+  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ GS +AL  A             PI+  +A +++G+V D      L 
Sbjct: 119 VIQADGGTRTTSITGSFVALAIAVNKIAIQHKLPVFPITDFLASVSVGVVGDK----ALL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED    +D  +  T SG    +Q   +        +   L   ++G L ++    
Sbjct: 175 DLNYEEDSKAKVDMNLVMTGSGKYVELQGTGEESPFDRQELDQLLSLGEQGILQMIERQK 234

Query: 537 KVLSESRLQL 546
           +VL     ++
Sbjct: 235 EVLGPIADKI 244



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 22/227 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+KL  G + + ++G+V    GET V+ T   +  +     GQ    +T  Y     A 
Sbjct: 13  RPMKLTAG-VNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + T   + I R+I R++R + +     E  +    +V+Q D  +    
Sbjct: 72  HSRNQREAAR-GKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQADGGTRTTS 130

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           ++    + A+ ++ +         P    +    V  +  + +L+   +ED   +  ++L
Sbjct: 131 ITGSFVALAIAVNKIAIQHKLPVFPITDFLASVSVGVVGDKALLDLNYEEDSKAKVDMNL 190

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            ++G+   V  ++    +       +   +  G      +IE   ++
Sbjct: 191 VMTGSGKYV-ELQGTGEESPFDRQELDQLLSLGEQGILQMIERQKEV 236


>gi|170718459|ref|YP_001783675.1| ribonuclease PH [Haemophilus somnus 2336]
 gi|189043765|sp|B0UWM2|RNPH_HAES2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|168826588|gb|ACA31959.1| ribonuclease PH [Haemophilus somnus 2336]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R     R I       +   GS L   G+T+ I   T+    ++     L G  +
Sbjct: 1   MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATV----EDSVPRFLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALIDAINFLLQNGTLTTNPIKGLVAAISVGIVNGE----TV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED +   D  V   + G +  +Q   +    S   ++  L  AK+G   +    
Sbjct: 173 CDLEYVEDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 RVALAE 238



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +GET V+ T   + S+     GQ    +T  Y     + 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            L+  P +G V    V  +NG+ V +    ED   +
Sbjct: 125 TRTASITGACVALIDAINFLLQNGTLTTNPIKGLVAAISVGIVNGETVCDLEYVEDSIAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
             +++ +      ++ V+   E    S   +L  +      C+ +  A 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQ 232


>gi|308070476|ref|YP_003872081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681]
 gi|305859755|gb|ADM71543.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Paenibacillus polymyxa E681]
          Length = 253

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 107/250 (42%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR+ + +R +    G+ +   GS     G+T+ I   T+    +E+    + G  + 
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATV----EERVPPFMKGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   ++     G  + R +   RL  RA+  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ GS +AL  A             PI+  +A +++G+V +      L 
Sbjct: 119 VIQADGGTRTTSITGSFVALAIAVNKIATQHKLPVFPITDFLASVSVGVVGEK----ALL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED    +D  +  T SG    +Q   +      N +   L   ++G L ++    
Sbjct: 175 DLNYEEDSKAKVDMNLVMTGSGKYVELQGTGEESPFDRNELDQLLSLGEQGILQMIERQK 234

Query: 537 KVLSESRLQL 546
           +VL     ++
Sbjct: 235 EVLGPIADKI 244



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 22/227 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+KL  G + + ++G+V    GET V+ T   +  +     GQ    +T  Y     A 
Sbjct: 13  RPMKLTAG-VNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + T   + I R+I R++R + +     E  +    +V+Q D  +    
Sbjct: 72  HSRNQREAAR-GKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQADGGTRTTS 130

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           ++    + A+ ++ +         P    +    V  +  + +L+   +ED   +  ++L
Sbjct: 131 ITGSFVALAIAVNKIATQHKLPVFPITDFLASVSVGVVGEKALLDLNYEEDSKAKVDMNL 190

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            ++G+   V  ++    +     + +   +  G      +IE   ++
Sbjct: 191 VMTGSGKYV-ELQGTGEESPFDRNELDQLLSLGEQGILQMIERQKEV 236


>gi|145637126|ref|ZP_01792788.1| ribonuclease PH [Haemophilus influenzae PittHH]
 gi|145640205|ref|ZP_01795789.1| ribonuclease PH [Haemophilus influenzae R3021]
 gi|148825447|ref|YP_001290200.1| ribonuclease PH [Haemophilus influenzae PittEE]
 gi|229846361|ref|ZP_04466469.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
 gi|166228284|sp|A5UAL6|RNPH_HAEIE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145269571|gb|EDK09512.1| ribonuclease PH [Haemophilus influenzae PittHH]
 gi|145274791|gb|EDK14653.1| ribonuclease PH [Haemophilus influenzae 22.4-21]
 gi|148715607|gb|ABQ97817.1| ribonuclease PH [Haemophilus influenzae PittEE]
 gi|229810454|gb|EEP46172.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
 gi|309972566|gb|ADO95767.1| Ribonuclease PH [Haemophilus influenzae R2846]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++ L         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  + 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREA 235


>gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
          Length = 237

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R ++          GS L   G+T+ +   T+ +         + G  +
Sbjct: 1   MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESG----VPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +   A    T+ I  
Sbjct: 57  GWINAEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   +A I++G+         +
Sbjct: 117 DVIQADGGTRTASISGACVALVDALTHMRAKGMINSNPLKHMIAAISVGIY----KGQAI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S + +   L  AK     I++  
Sbjct: 173 SDLEYIEDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+   T      ++G+VL  +G T VL T   +  +     GQ    +   Y     A 
Sbjct: 12  RPVTF-TRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWINAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
                       +     + I R+I R++R     K    N   +  +V+Q D       
Sbjct: 71  -HTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL           M++  P +  +    V    GQ + +    ED   +  +
Sbjct: 128 ASISGACVALVDALTHMRAKGMINSNPLKHMIAAISVGIYKGQAISDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++ T   ++ ++   E    S D + + +    +  + +I+   +   
Sbjct: 188 NVILTET-GKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|227328057|ref|ZP_03832081.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVAKGKLKKNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 22/201 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL   T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTF-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNQMVAKGKLKKNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE 197
            V  T+D  + +E++     E
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGE 207


>gi|77919626|ref|YP_357441.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
 gi|77545709|gb|ABA89271.1| RNAse PH [Pelobacter carbinolicus DSM 2380]
          Length = 244

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 88/242 (36%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I    G  +   GS L   G+T+ +   T+    +E     L G  + 
Sbjct: 8   RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATV----EEGVPSFLRGQGQG 63

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   S      G    R     RL  R++  +         T+ I  +
Sbjct: 64  WITAEYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   V+ +++GLV    D   L 
Sbjct: 124 VLQADGGTRTAAITGAYVALHDAVYGLVRENQLSDSPLRDSVSAVSVGLV----DGHPLL 179

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D     T SG    +Q   +    S   +      A  G   +     
Sbjct: 180 DLDYAEDFRAAVDMNFVITGSGHFVEVQGTAEERPFSMEELDDLRNLALAGCRDLHRLQL 239

Query: 537 KV 538
           + 
Sbjct: 240 RA 241



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+    G   R ++G+VL ++GET VL     +  +     GQ    +T  Y     A 
Sbjct: 18  RPIYFSRG-FTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQGQGWITAEYSMLPRAT 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            ++         +       I R+I RS+R +       E    +  +V+Q D       
Sbjct: 77  -QVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCDVLQADGG--TRT 133

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            LS  P    V    V  ++G  +L+    ED      +
Sbjct: 134 AAITGAYVALHDAVYGLVRENQLSDSPLRDSVSAVSVGLVDGHPLLDLDYAEDFRAAVDM 193

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +  ++G+   V  V+  A +   S + + D        C+ +     +  + 
Sbjct: 194 NFVITGSGHFV-EVQGTAEERPFSMEELDDLRNLALAGCRDLHRLQLRALEA 244


>gi|145639813|ref|ZP_01795414.1| ribonuclease PH [Haemophilus influenzae PittII]
 gi|145271031|gb|EDK10947.1| ribonuclease PH [Haemophilus influenzae PittII]
 gi|309750310|gb|ADO80294.1| Ribonuclease PH [Haemophilus influenzae R2866]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 24/236 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQI 228



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 32/231 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++GL         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISK 220
             +++ +      ++ V+   E    S + +L  +      C  +  A  +
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRE 234


>gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
 gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
          Length = 250

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 22/234 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R I+ ++G      GS+L   G+T+ +   T+    ++     + G Q 
Sbjct: 2   VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATI----EDGVPAWMRGQQG 57

Query: 372 NDFMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT + SR     PS R     RL  RA+   +   A    T+ I  ++
Sbjct: 58  GWVTAEYAMLPRATLQRSRRERNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDV 117

Query: 430 TESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A++ G  +AL                P   P+A +++G+++D     +L D
Sbjct: 118 LQADGGTRTASISGGYVALALAVDHLVRSGAVETYPTLTPLAAVSVGMIQDT----LLLD 173

Query: 479 ISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +ED    +D  V    +S    +Q   +   +S   +   L  A RG   I
Sbjct: 174 LCYEEDSQADLDCNVVMNINSAFVEVQATAERTPVSRAQLDALLDLAARGIQQI 227



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 79/219 (36%), Gaps = 22/219 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +E G  A  ++G+ L  YG T VL T   +  +     GQ    +T  Y     A 
Sbjct: 13  RPITIEIGA-APYAEGSALIAYGNTRVLCTATIEDGVPAWMRGQQGGWVTAEYAMLPRA- 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                   R  + P+     I R+I R++R         E    +  +V+Q D  +    
Sbjct: 71  --TLQRSRRERNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDVLQADGGTRTAS 128

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD-LF 177
           +S    + AL +  L         P   P+    V  I    +L+   +ED Q  LD   
Sbjct: 129 ISGGYVALALAVDHLVRSGAVETYPTLTPLAAVSVGMIQDTLLLDLCYEEDSQADLDCNV 188

Query: 178 VSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPV 214
           V     A + V+  A    +S   +   +       + +
Sbjct: 189 VMNINSAFVEVQATAERTPVSRAQLDALLDLAARGIQQI 227


>gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c]
 gi|123063997|sp|Q15MV7|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c]
          Length = 237

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R ++          GS L   G+T+ +   ++     E     + G  +
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVT----EGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R +   RL  R++   L        T+ +  
Sbjct: 57  GWVNAEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A I++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTWMRSKGIIKTNPMKHMIAAISVGIYKGN----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  V  TD+G +  +Q   +    S   M   L+ AK G   + +E 
Sbjct: 173 ADLEYTEDSEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 23/213 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL    V +   +   GQ    +   Y     A             +
Sbjct: 24  AEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVNAEYSMLPRAT-HTRSDREAARGK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
                + I R+I RS+R         E  ++   +V+Q D        S+  A  AL+ +
Sbjct: 83  QGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQADGG--TRTASITGACVALVDA 140

Query: 142 -------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                  G+    P +  +    V    G  + +    ED   +  +++ ++ T   + +
Sbjct: 141 LTWMRSKGIIKTNPMKHMIAAISVGIYKGNAIADLEYTEDSEAETDMNVVMTDTGKMIEV 200

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
               E    S + + + +    +  + + +   
Sbjct: 201 QGTAEGEPFSIEEMHEMLELAKHGIRELFDEQK 233


>gi|253690467|ref|YP_003019657.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494124|sp|C6DIC7|RNPH_PECCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|251757045|gb|ACT15121.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR +       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQVRPLKLTRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNQMVANGKLKKNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLSLLALARGGIETIVQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 22/201 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPLKL T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPLKL-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNQMVANGKLKKNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE 197
            V  T+D  + +E++     E
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGE 207


>gi|212638433|ref|YP_002314953.1| ribonuclease PH [Anoxybacillus flavithermus WK1]
 gi|226736883|sp|B7GH12|RNPH_ANOFW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|212559913|gb|ACJ32968.1| Ribonuclease PH [Anoxybacillus flavithermus WK1]
          Length = 255

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 109/255 (42%), Gaps = 23/255 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R +  +   L+   GS L   GDT+ I   ++    +++    + G  +
Sbjct: 1   MRVDGRTNDELRPVHIEPNYLKHPEGSVLISIGDTKVICTASI----EDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMIPRATEQRNIREASKGKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A            +PI+  +A  ++G+     +  I+
Sbjct: 117 DVIQADGGTRTASITGAFVAMTLALGKMVEEKKLPALPITDFLAATSVGI---DGEHGII 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    S   ++  L  A++G   ++   
Sbjct: 174 LDLNYIEDSKAQVDMNIVMTGSGRFVEIQGTGEEATFSYEQLLDLLTVAEKGIHELIARQ 233

Query: 536 SKVLSESRLQLGEFT 550
            + L     Q+ +  
Sbjct: 234 KEALGSLAEQIMQHC 248



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 92/238 (38%), Gaps = 29/238 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +E   + +  +G+VL + G+T V+ T   +  +     G     +T  Y     A 
Sbjct: 12  RPVHIEPNYL-KHPEGSVLISIGDTKVICTASIEDKVPPFMRGGGKGWITAEYAMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + +   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRNIREASKGKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QG 172
            S+  A  A+ L+            LP    +    V  I+G++  +L+    ED   Q 
Sbjct: 128 ASITGAFVAMTLALGKMVEEKKLPALPITDFLAATSVG-IDGEHGIILDLNYIEDSKAQV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            +++ ++G+    + ++    + +   + +LD +         +I    +     A++
Sbjct: 187 DMNIVMTGS-GRFVEIQGTGEEATFSYEQLLDLLTVAEKGIHELIARQKEALGSLAEQ 243


>gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1]
 gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1]
          Length = 244

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     +      E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTSEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIV----DGEP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADL 231



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T  +   +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTSEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  ++G+ +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIVDGEPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
           1728]
 gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
 gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
          Length = 248

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 9/234 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +  +R+DGR    +R I  Q G+L R  GS+    G  + +V V  G +E   Y  
Sbjct: 10  KLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGV-YGPKEA--YPK 66

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                        YN    +  E  R G P RR +   ++   A+   +         + 
Sbjct: 67  HSQDIDHAIVKARYNMAAFSVDERKRPG-PDRRTMEISKVISEALSSSIMIEQFPRAEID 125

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++D  + +A +  +++AL DAGVP+   V G   G V    D  ++ D+S +ED
Sbjct: 126 VYIEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKV----DGHMVLDLSKEED 181

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G  D  +A        + M M  G ++E+ +  A+         I     + 
Sbjct: 182 NYGEADIPIAIMPKTGDIVLMQMD-GDVTEDELYQAMDMIFEATKRISQIQREA 234



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 93/217 (42%), Gaps = 19/217 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP+K++ G + R +DG+    +G   ++  V   +          D   +   Y    ++
Sbjct: 28  RPIKIQAGVLNR-ADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIVKARYNMAAFS 86

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P    + IS++I  ++    +  +  + E  V I V+Q D      
Sbjct: 87  VDE------RKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAG--TR 138

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +  + AA+ AL  +G+P    VVG     ++G  VL+   +ED   +  + + +      
Sbjct: 139 IAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMPKTGD 198

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++++++ + ++ED +  A+       K + +   + 
Sbjct: 199 IVLMQMDGD-VTEDELYQAMDMIFEATKRISQIQREA 234


>gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 248

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 21/244 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R D R ++ +R +  + G  +   GS+L   G T+ +   T+    +E+    L GT  
Sbjct: 2   PRRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATV----EERVPFFLKGTGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP A  E +      G  S R     RL  RA+  V+   A    T+ I  
Sbjct: 58  GWVTAEYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAG---------VPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A+V G+ +AL++A           P+   VA +++G+  + +    L D
Sbjct: 118 DVLQADGGTRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEP---LLD 174

Query: 479 ISGDEDHLGHMDFKVAGTDSGI-TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  +  T +G+   +Q   +    +   +   L   ++G   ++++   
Sbjct: 175 LCYEEDSAAMVDMNIVMTGAGVFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKV 234

Query: 538 VLSE 541
            L +
Sbjct: 235 ALGD 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+++E G   R +DG+ L   G T V+     +    +   FF        +T  Y   
Sbjct: 13  RPVRIERG-YQRYADGSALIETGHTRVVCAATVE----ERVPFFLKGTGTGWVTAEYSML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
             A  +       R    +     I R+I R++R +       E    +  +V+Q D   
Sbjct: 68  PGAGAERTAREAVR-GHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQADGG- 125

Query: 125 SPHVVSMVAASAALMLS--------GL-PFEGPVVGAQVDY-INGQYVLNPRLDEDQG-- 172
                S+  A  AL+ +        G+ P    V    V      + +L+   +ED    
Sbjct: 126 -TRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEEDSAAM 184

Query: 173 -SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++G    V +    E    +   +   +  G    + +I+   
Sbjct: 185 VDMNIVMTGAGVFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQK 233


>gi|16272231|ref|NP_438442.1| ribonuclease PH [Haemophilus influenzae Rd KW20]
 gi|68248879|ref|YP_247991.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
 gi|229844976|ref|ZP_04465113.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
 gi|260580844|ref|ZP_05848669.1| ribonuclease PH [Haemophilus influenzae RdAW]
 gi|319896608|ref|YP_004134801.1| ribonuclease ph [Haemophilus influenzae F3031]
 gi|1173102|sp|P44444|RNPH_HAEIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81336705|sp|Q4QNR6|RNPH_HAEI8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|1573239|gb|AAC21939.1| ribonuclease PH (rph) [Haemophilus influenzae Rd KW20]
 gi|68057078|gb|AAX87331.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
 gi|229812110|gb|EEP47802.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
 gi|260092467|gb|EEW76405.1| ribonuclease PH [Haemophilus influenzae RdAW]
 gi|317432110|emb|CBY80461.1| ribonuclease PH [Haemophilus influenzae F3031]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++GL         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  + 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREA 235


>gi|315497101|ref|YP_004085905.1| ribonuclease ph [Asticcacaulis excentricus CB 48]
 gi|315415113|gb|ADU11754.1| ribonuclease PH [Asticcacaulis excentricus CB 48]
          Length = 250

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 24/248 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K  R   R ++ +R ++ + G+ +   GS L   G T+ +   ++    ++     L G 
Sbjct: 11  KTFRPSNRQADQLRKVTLETGVTRYAEGSCLITVGHTKVLATASV----EQGVPPFLKGK 66

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +      Y  LP +T   SR     G  S R     RL  R++  V+   A     + +
Sbjct: 67  GQGWVTAEYGMLPRSTHTRSRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITL 126

Query: 426 VSEITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++  + +AL           + +  PI   VA ++ G+ ++    +
Sbjct: 127 DCDVIQADGGTRCASITAAWVALSLACDKLLEQKLISASPIIDQVAAVSCGVFEN----V 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+  DED     D     T SG I  +Q   +  G S +        A +G   +  
Sbjct: 183 PVLDLDYDEDSTAETDSNFVLTGSGHIVEIQATGEKRGFSRDEFNTLFDLATQGATELFA 242

Query: 534 EMSKVLSE 541
              +   +
Sbjct: 243 LQREAAGK 250



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 81/232 (34%), Gaps = 30/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LETG + R ++G+ L T G T VLAT   ++ +     G+    +T  Y     + 
Sbjct: 24  RKVTLETG-VTRYAEGSCLITVGHTKVLATASVEQGVPPFLKGKGQGWVTAEYGMLPRST 82

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 83  ----HTRSRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQADGG-- 136

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+ AA  AL            +S  P    V            VL+   DED   +
Sbjct: 137 TRCASITAAWVALSLACDKLLEQKLISASPIIDQVAAVSCGVFENVPVLDLDYDEDSTAE 196

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
              +  ++G+   V +    E    S D               +     + A
Sbjct: 197 TDSNFVLTGSGHIVEIQATGEKRGFSRDEFNTLFDLATQGATELFALQREAA 248


>gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG']
          Length = 245

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  E +R +S + G+     GS L   G+T+ +   ++    +E+    L    +
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASV----EEKVPPFLKDQGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E +      G  S R     RL  R++  V+        T+ I  
Sbjct: 58  GWVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+  A             P+ + +A +++G+V    + + +
Sbjct: 118 DVLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVV----EGLPV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +  T+SG    +Q   +    S   +   L   ++G   I+   
Sbjct: 174 LDLCYTEDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIACQ 233

Query: 536 SKVLSES 542
             V S  
Sbjct: 234 KSVFSFP 240



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R L ++TG     ++G+VL   G T VL T   +  +      Q    +T  Y     + 
Sbjct: 13  RSLSIKTGVNLY-AEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS---KCYKNETQVIINVMQHDLESSPH 127
            +        + + +     I R+I RS+R +        +    +  +V+Q D  +   
Sbjct: 72  HE-RNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRT-ITIDCDVLQADGGTRTA 129

Query: 128 VVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLD 175
            +S    +  L  S L         P    +    V  + G  VL+    ED   +  ++
Sbjct: 130 SISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGLPVLDLCYTEDSGAETDMN 189

Query: 176 LFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           L ++ +   V  ++  A +   S   +   +  G    + +I    
Sbjct: 190 LVMTESGHFV-EIQGTAEETPFSRQTLDTLLGLGEKGIREIIACQK 234


>gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
 gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
          Length = 247

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 103/252 (40%), Gaps = 24/252 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +  +R +       +   GS L   G+T+ I   T+    +++    L  T + 
Sbjct: 3   RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATI----EDKVPPFLKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  RA+  V+   A    TL I  +
Sbjct: 59  WITAEYSMLPSSTQSRKVRESSRGKVEGRTQEIQRLIGRALRSVVDLDALGERTLWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL+D             +P+   V+ I++G++        + 
Sbjct: 119 VIQADGGTRTASITGSFVALVDALNKLKEEGAIESIPVRSFVSAISVGIINGE----AML 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD G    +Q   +    ++  ++  L+  ++G L ++    
Sbjct: 175 DLCYEEDSTAKVDMNIVMTDRGEFVEVQGTGEESPFAKADLMNLLELGEKGNLELIQLQK 234

Query: 537 KVLSESRLQLGE 548
           + L      +  
Sbjct: 235 EALGAIADAIEN 246



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RP+K  T    R + G+VL   GET V+ T   +  +     F        +T  Y    
Sbjct: 13  RPVKF-TRNFTRYAQGSVLVEMGETKVICTATIEDKVPP---FLKNTGKGWITAEYSMLP 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESS 125
            +          R  +       I R+I R++R +       E    +  +V+Q D    
Sbjct: 69  SSTQSRKVRESSR-GKVEGRTQEIQRLIGRALRSVVDLDALGERTLWIDCDVIQADGG-- 125

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  +  AL            +  +P    V    V  ING+ +L+   +ED   +
Sbjct: 126 TRTASITGSFVALVDALNKLKEEGAIESIPVRSFVSAISVGIINGEAMLDLCYEEDSTAK 185

Query: 172 GSLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
             +++ ++   + V  V+    +    +  +++ +  G      +I+   + 
Sbjct: 186 VDMNIVMTDRGEFV-EVQGTGEESPFAKADLMNLLELGEKGNLELIQLQKEA 236


>gi|113461435|ref|YP_719504.1| ribonuclease PH [Haemophilus somnus 129PT]
 gi|123132220|sp|Q0I4U1|RNPH_HAES1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|112823478|gb|ABI25567.1| RNAse PH [Haemophilus somnus 129PT]
          Length = 238

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R     R I       +   GS L   G+T+ I   T+    ++     L G  +
Sbjct: 1   MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATV----EDSVPRFLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALIDAINFLLKNGTLTTNPIKGLVAAISVGIVNGE----TV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED +   D  V   + G +  +Q   +    S   ++  L  AK+G   +    
Sbjct: 173 CDLEYVEDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQ 232

Query: 536 SKVLSE 541
              L+E
Sbjct: 233 RVALAE 238



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +GET V+ T   + S+     GQ    +T  Y     + 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            L+  P +G V    V  +NG+ V +    ED   +
Sbjct: 125 TRTASITGACVALIDAINFLLKNGTLTTNPIKGLVAAISVGIVNGETVCDLEYVEDSIAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
             +++ +      ++ V+   E    S   +L  +      C+ +  A 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQ 232


>gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Vibrio angustum S14]
 gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14]
          Length = 238

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAINYMLEKGMIKKSPLKGMVAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK G   I++  
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGITDIISMQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T V+ T   + ++     G+    +T  Y     A 
Sbjct: 12  RPITI-TRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R         E    V  +V+Q D    
Sbjct: 71  ----HTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  AL           M+   P +G V    V    G+ + +    ++    
Sbjct: 125 TRTASITGAMVALVDAINYMLEKGMIKKSPLKGMVAAVSVGIYKGEPICDLEYLEDSAAE 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + +L  +    +    +I    +  +
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGITDIISMQKQALE 237


>gi|225849820|ref|YP_002730054.1| ribonuclease PH [Persephonella marina EX-H1]
 gi|254808597|sp|C0QTN9|RNPH_PERMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|225646433|gb|ACO04619.1| ribonuclease PH [Persephonella marina EX-H1]
          Length = 261

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 32/277 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +           GS L   G+T+ I+  ++    +E+    L GT +
Sbjct: 1   MRPDGRKPTQLRPVKIIRDFNIYAEGSVLIEMGNTKVIITASI----EEKVPPFLRGTGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      GAPS R     RL  R++  V+        TL +  
Sbjct: 57  GWITAEYAMLPRSTESRSIREVVRGAPSGRTQEIQRLIGRSLRGVVDLKKLGERTLWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG + +A++ G+ +A+ D              P+   VA I+ G+V +     ++
Sbjct: 117 DVIQADGGTRVASITGAFIAVADAMIKLTESGKVRQNPLKDYVAAISTGIVGNE----VV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    ++      L+  K G   +++  
Sbjct: 173 LDLNFKEDSSAKVDMNLVMTGSGNFVEVQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQ 232

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
            K +           P +        +  +    GG 
Sbjct: 233 KKFIEG--------MPSIGHWKRLSIKEFSYTDTGGN 261



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 25/218 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T   +  +     G     +T  Y     +        + R   
Sbjct: 24  AEGSVLIEMGNTKVIITASIEEKVPPFLRGTGQGWITAEYAMLPRSTESRSIREVVR-GA 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHVVSMVAASAALMLS 141
           P+     I R+I RS+R +       E    V  +V+Q D      V S+  A  A+  +
Sbjct: 83  PSGRTQEIQRLIGRSLRGVVDLKKLGERTLWVDCDVIQADGG--TRVASITGAFIAVADA 140

Query: 142 GL-----------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLM 187
            +           P +  V       +  + VL+    ED      ++L ++G+ + V  
Sbjct: 141 MIKLTESGKVRQNPLKDYVAAISTGIVGNEVVLDLNFKEDSSAKVDMNLVMTGSGNFV-E 199

Query: 188 VELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           V+    +   ++      + +G      +I    K  +
Sbjct: 200 VQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQKKFIE 237


>gi|300721256|ref|YP_003710526.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
 gi|297627743|emb|CBJ88269.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
          Length = 247

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 93/247 (37%), Gaps = 24/247 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R  GR +  VR I       +   GS L   GDT+ +   ++    +E     L G  
Sbjct: 5   GKRPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASV----EEGIPRFLKGQG 60

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT   +      G  + R +   RL  R++   +       +T+ + 
Sbjct: 61  QGWITAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLD 120

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +AL+D              P+   VA +++G+V        
Sbjct: 121 CDVIQADGGTRTAAISGACVALVDALNKLVADGKLKESPLKSMVAAVSVGIVGGEG---- 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+   ED     D  V   D G +  +Q   +    S + ++  L  AK G   I   
Sbjct: 177 LCDLEYVEDSAAETDMNVVMIDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFEA 236

Query: 535 MSKVLSE 541
               L +
Sbjct: 237 QRDALKQ 243



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 17  RPIKM-TRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + T   + I R+I RS+R         E  +    +V+Q D       
Sbjct: 76  NSRNAREAAR-GKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQADGG--TRT 132

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            ++  A  AL+           L   P +  V    V  + G+ + +    ++     D+
Sbjct: 133 AAISGACVALVDALNKLVADGKLKESPLKSMVAAVSVGIVGGEGLCDLEYVEDSAAETDM 192

Query: 177 FVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAISKLAKM 224
            V    D  + +E++     E    D +L  +       + + EA     K 
Sbjct: 193 NVVMIDDGRM-IEVQGTAEGEPFSHDELLSLLSLAKEGLETIFEAQRDALKQ 243


>gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34]
 gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34]
          Length = 238

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR I+          GS L   G+T+ I   ++    +E     L G  +
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASV----EENVPRWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G    R +   RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+ K        
Sbjct: 117 DVIQADGGTRTASITGAMVALVDAINYMLENGMIKKSPLKSMVAAVSVGIYKGEPT---- 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  AK G   I++  
Sbjct: 173 CDLEYLEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 KKA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T V+ T   + ++     G+    +T  Y     A 
Sbjct: 12  RPITI-TRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   RRE    +     + I R+I RS+R         E    V  +V+Q D    
Sbjct: 71  ----HTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  AL           M+   P +  V    V    G+   +    ++    
Sbjct: 125 TRTASITGAMVALVDAINYMLENGMIKKSPLKSMVAAVSVGIYKGEPTCDLEYLEDSAAE 184

Query: 174 LDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            D+ V  T++  ++ ++   E    S + +L  +    +    +I    K  +
Sbjct: 185 TDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKKALE 237


>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
 gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
          Length = 252

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 25/251 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I    G      GS L   G+T+ +   ++     E       G+   
Sbjct: 4   RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVT----EGVPSWRRGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E S+     G    R     RL  R++   +   A    T+ I  +
Sbjct: 60  WLTAEYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVTYLGAGGKLADPQPLSCIIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +    +   +   L  A  G  +I+   
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENIVAAQ 235

Query: 536 SKVLSESRLQL 546
            +VL++    L
Sbjct: 236 REVLAQPYPGL 246



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 80/235 (34%), Gaps = 31/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+K   G  +  + G+VL  +G T V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPIKFTRGFTSHPA-GSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTAEYSMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
            +       R  +       ISR+I RS+R          N   +  +V+Q D       
Sbjct: 73  HERSKRESVR-GKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL  +              P    +    V  ++G+  L+ P  ++ +  +D
Sbjct: 130 AAITGAYVALADAVTYLGAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T    L+      +       + D +LD    G       + A  ++   
Sbjct: 190 MNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENI---VAAQREVLAQ 241


>gi|319775856|ref|YP_004138344.1| ribonuclease PH [Haemophilus influenzae F3047]
 gi|329123701|ref|ZP_08252261.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|317450447|emb|CBY86663.1| ribonuclease PH [Haemophilus influenzae F3047]
 gi|327469900|gb|EGF15365.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 238

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    + +   + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++GL         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  + 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREA 235


>gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
 gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
          Length = 486

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 130/352 (36%), Gaps = 34/352 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R ++        + GS L   G+T+ I   ++    ++     + GT 
Sbjct: 35  GPRPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASV----EDGVPGFMKGTG 90

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y+ LP AT    R     G    R     RL  R+I  V+        T+ I 
Sbjct: 91  KGWISAEYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWID 150

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL D             +P++  +A +++G+V    D  +
Sbjct: 151 CDVIQADGGTRTASITGAFVALADALYKLYQAGDIKKMPLTSMLAAVSVGVV----DSQV 206

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             DI   ED    +D  +   + G    +Q   +    + + M   L+ A++G   ++  
Sbjct: 207 CLDICYQEDSNAEVDTNIIMNNKGQFIEIQCTGEERPFTRDEMDKILEYAEKGNRDLMRI 266

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
             +VL E    +               +   +I  G       +++  A ++ D      
Sbjct: 267 QRRVLGEVADAIIGTE----------YEREAIIATGNMHKLEEIQKMLADMDFDIKSLKD 316

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +    +  IE  +    +            G++    D G  V   G R G+
Sbjct: 317 VDLDGVEIIENGKTFEHNALIKARTISKLTGKIAIGDDSGIEVDALGKRPGI 368



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 25/231 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T   +  +     G     ++  Y     A  +        + R  
Sbjct: 61  GSVLIEVGNTKVICTASVEDGVPGFMKGTGKGWISAEYSMLPSAT-ETRKRRDSSKGRVD 119

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                I R+I RSIR +       +    +  +V+Q D        S+  A  AL     
Sbjct: 120 GRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCDVIQADGG--TRTASITGAFVALADALY 177

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                  +  +P    +    V  ++ Q  L+    ED   +   ++ ++  +   + ++
Sbjct: 178 KLYQAGDIKKMPLTSMLAAVSVGVVDSQVCLDICYQEDSNAEVDTNIIMN-NKGQFIEIQ 236

Query: 190 LEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
               +   + D +   + +     + ++    ++    A   I  + +  +
Sbjct: 237 CTGEERPFTRDEMDKILEYAEKGNRDLMRIQRRVLGEVADAIIGTEYEREA 287


>gi|261491672|ref|ZP_05988254.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494209|ref|ZP_05990709.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310112|gb|EEY11315.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312687|gb|EEY13808.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 238

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  VR+I       +   GS L   G+T+ +   T+    +E     L G Q+
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATV----EESVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G    R +   RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALYDAMNKLVADGTLKTNPMKGLVAAISVGIVAGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   ++   
Sbjct: 173 CDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQ 232

Query: 536 SKVLSE 541
            K L+E
Sbjct: 233 RKALAE 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    R ++G+VL  +GET VL     + S+     GQ    +T  Y     A 
Sbjct: 12  REIKI-TRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVTAEYGMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +      +   +     + I R+I RS+R +       E    V  +V+Q D      
Sbjct: 71  HSRTQREAAK--GKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            L   P +G V    V  + G+ V +    ED   +  
Sbjct: 127 TASITGACVALYDAMNKLVADGTLKTNPMKGLVAAISVGIVAGEAVCDLEYLEDSNAETD 186

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ +      ++ V+   E    S   +L  +         ++EA  K    
Sbjct: 187 MNVVMV-EDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238


>gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
 gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R I+ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    + + +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSELAAH 234

Query: 535 MSKVLS 540
               L 
Sbjct: 235 QRTALD 240



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 24/201 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 13  RPITIERGW-SKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + R       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLSGL-------------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P  G V    V  + G  +L+   +ED +   
Sbjct: 129 AAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEEDVKADT 188

Query: 175 DLFVSGTQDA-VLMVELEANQ 194
           D+ V  T D   + V+  A  
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEA 209


>gi|238764323|ref|ZP_04625274.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
 gi|238697474|gb|EEP90240.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
          Length = 238

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVAAGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L+ A+ G   I    
Sbjct: 173 CDLEYIEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLELARGGIETIFLAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALEQ 238



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 18/196 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D  +    
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL-F 177
           +S    + A  L+ L         P +G V    V  + G+ + +    ++     D+  
Sbjct: 130 ISGACVALADALNKLVAAGKLKANPMKGLVAAVSVGIVKGEALCDLEYIEDSAAETDMNV 189

Query: 178 VSGTQDAVLMVELEAN 193
           V      ++ V+  A 
Sbjct: 190 VMMEDGRMIEVQGTAE 205


>gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
 gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
          Length = 475

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 24/250 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            +   R DGR  + +RD+       + + GS L   G+T+ I   ++    +E     + 
Sbjct: 21  ENTSSRPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASI----EEGVPHFMK 76

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           G         Y+ LP AT    +     G    R     RL  R+I  V+   A    T+
Sbjct: 77  GAGSGWITAEYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTI 136

Query: 424 RIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDD 472
            I  ++ ++DG +  A++ G+ +AL D             +P+   +A I++G++ D   
Sbjct: 137 WIDCDVIQADGGTRTASITGAYVALADALYKLYKSGQIKKMPVKNLLAAISIGIIDDE-- 194

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             +  DI  +ED    +D  V   + G    +Q   +    + + +   L+ A++G   +
Sbjct: 195 --VRLDICYEEDSKAMVDTNVVMNNRGEFIEIQGTGEERPFTRDELSRILELAEKGNRDL 252

Query: 532 LNEMSKVLSE 541
           +    + L E
Sbjct: 253 MRLQRQALGE 262



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 34/258 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T    + S G+VL   G T V+ T   +  +     G     +T  Y     A 
Sbjct: 36  RDVKI-TRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITAEYSMLPSAT 94

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + +       I R+I RSIR +       E    +  +V+Q D       
Sbjct: 95  -ESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQADGG--TRT 151

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL--- 174
            S+  A  AL            +  +P +  +    +  I+ +  L+   +ED  ++   
Sbjct: 152 ASITGAYVALADALYKLYKSGQIKKMPVKNLLAAISIGIIDDEVRLDICYEEDSKAMVDT 211

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA------ 226
           ++ ++   + +  ++    +   + D +   +       + ++    +     A      
Sbjct: 212 NVVMNNRGEFI-EIQGTGEERPFTRDELSRILELAEKGNRDLMRLQRQALGEVADAIIGC 270

Query: 227 --KEPIVIDSKDFSKLEE 242
             K   VI + +  KLEE
Sbjct: 271 EYKREAVIATGNMHKLEE 288


>gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168]
 gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168]
          Length = 246

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 104/244 (42%), Gaps = 24/244 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R+DGR ++ +RD+       +   GS L   GDT+ I   ++    +E     L G 
Sbjct: 5   NNLRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASV----EESVPPFLRGQ 60

Query: 370 QRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP +T   +      G  S R     RL  R++  V+        T+ +
Sbjct: 61  NTGWLTAEYSLLPRSTHSRTIREVARGRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIWV 120

Query: 426 VSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL+D              P++  +A  ++G+V    D  
Sbjct: 121 DCDVIQADGGTRTASITGAYVALVDAINYLIEEGVLEESPLNSFMAATSVGVV----DGE 176

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +L D+  +ED    +D  +  T+ G +  +Q   +    S + M   +  A++G   +++
Sbjct: 177 MLLDLCYEEDFQAQVDMNIVMTEDGRVIEIQGTAEKFPFSRDQMNTLMDLAEKGIRELVS 236

Query: 534 EMSK 537
              K
Sbjct: 237 FQKK 240



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 27/223 (12%)

Query: 22  RIARQ----SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIP 74
           +I+RQ    ++G+VL   G+T V+ T   + S+     GQ+   LT  Y     +     
Sbjct: 21  KISRQYTKYAEGSVLIETGDTKVICTASVEESVPPFLRGQNTGWLTAEYSLLPRSTHSRT 80

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMV 132
              + R  R +     I R+I RS+R +       E    V  +V+Q D        S+ 
Sbjct: 81  IREVAR-GRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIWVDCDVIQADGG--TRTASIT 137

Query: 133 AASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSG 180
            A  AL           +L   P    +    V  ++G+ +L+   +ED Q  +D+ +  
Sbjct: 138 GAYVALVDAINYLIEEGVLEESPLNSFMAATSVGVVDGEMLLDLCYEEDFQAQVDMNIVM 197

Query: 181 TQDA-VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK 220
           T+D  V+ ++  A +   S D +   +       + ++    K
Sbjct: 198 TEDGRVIEIQGTAEKFPFSRDQMNTLMDLAEKGIRELVSFQKK 240


>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
 gi|194692034|gb|ACF80101.1| unknown [Zea mays]
          Length = 242

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +     +  +
Sbjct: 8   TGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVQNKGQQV-NS 65

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +       Y     +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 66  KEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED  G  
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTP----LLDLNYLEDSAGGS 181

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNE 534
           D  V        +T +QMD K+   +   +M +A++  K    +I   
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREV 229



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 15/216 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           R LK E G +AR +DG+ L   G T V+A V   R +++           +   Y+   +
Sbjct: 21  RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMAEF 79

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G       RR+ +       IS +I +++           +Q+ I V     +     
Sbjct: 80  STGD-----RRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADGGTRS 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS--GTQDAV 185
             + AA+ AL  +G+P           Y+    +L+    ++  G  D+ V      D V
Sbjct: 135 ACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAKMDKV 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++++A  L  D   + +      CK +   I ++
Sbjct: 195 TLLQMDAK-LPIDTFENVMGLAIEGCKAIATYIREV 229


>gi|332308581|ref|YP_004436432.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175910|gb|AEE25164.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 237

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R ++          GS L   G+T+ +   ++     E     + G  +
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVT----EGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R +   RL  R++   L        T+ +  
Sbjct: 57  GWVTAEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A I++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTWMRSKGIIKTNPMKHMIAAISVGIYKGN----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  V  TD+G +  +Q   +    S   M   L+ AK G   + +E 
Sbjct: 173 ADLEYTEDSDAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 23/213 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL    V +   +   GQ    +T  Y     A             +
Sbjct: 24  AEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVTAEYSMLPRAT-HTRSDREAARGK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
                + I R+I RS+R         E  ++   +V+Q D        S+  A  AL+ +
Sbjct: 83  QGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQADGG--TRTASITGACVALVDA 140

Query: 142 -------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                  G+    P +  +    V    G  + +    ED   +  +++ ++ T   + +
Sbjct: 141 LTWMRSKGIIKTNPMKHMIAAISVGIYKGNAIADLEYTEDSDAETDMNVVMTDTGKMIEV 200

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
               E    S + + + +    +  + + +   
Sbjct: 201 QGTAEGEPFSIEEMHEMLELAKHGIRELFDEQK 233


>gi|86136764|ref|ZP_01055342.1| ribonuclease PH [Roseobacter sp. MED193]
 gi|85826088|gb|EAQ46285.1| ribonuclease PH [Roseobacter sp. MED193]
          Length = 237

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R+   +R +S + G  +   GS L   G+T  +   +L  R        + G+  
Sbjct: 1   MRPSNRELNEMRSVSIETGFTKHAEGSCLIKMGETHVLCTASLEPR----VPSFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +A       LM AG     P+  PV+ I+ G+         +
Sbjct: 117 DVLQADGGTRCAAITGGWVALRLAVNKLMKAGEVKIDPLMDPVSAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    S + M   +  A++G   +    
Sbjct: 173 LDLDYPEDSEAGVDGNFVMTGSGKLIEVQMSAEGSVFSRDQMNQLMDLAEKGTQELAALQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAACA 237



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 38/233 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           R + +ETG   + ++G+ L   GET VL T     SL+     F        +T  Y   
Sbjct: 12  RSVSIETG-FTKHAEGSCLIKMGETHVLCTA----SLEPRVPSFIKGSGLGWVTAEYGML 66

Query: 67  TYAVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHD 121
             A        +RRE    +     + I R+I R++R    +    E Q+    +V+Q D
Sbjct: 67  PRATN----TRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQAD 122

Query: 122 LESSPHVVSMVAASAALMLS----------GL-PFEGPVVGAQVDYINGQYVLN---PRL 167
                   ++     AL L+           + P   PV         GQ VL+   P  
Sbjct: 123 GG--TRCAAITGGWVALRLAVNKLMKAGEVKIDPLMDPVSAISCGIYAGQPVLDLDYPED 180

Query: 168 DEDQGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            E     +  ++G+   + + +  E +  S D +   +       + +     
Sbjct: 181 SEAGVDGNFVMTGSGKLIEVQMSAEGSVFSRDQMNQLMDLAEKGTQELAALQK 233


>gi|145297207|ref|YP_001140048.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142849979|gb|ABO88300.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 240

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 95/241 (39%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +  +R ++      +   GS L   G+T+ +   ++ T         L G  + 
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTS----VPRFLKGKGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T          G  S R +   RL  R++   +  TA   +++ +  +
Sbjct: 59  WVTAEYGMLPRSTHSRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+D              P+ + +A +++G+ +       + 
Sbjct: 119 VLQADGGTRTASITGACVALVDALNWMVEKGMIKQSPLKQMIAAVSVGMYQGE----AIC 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T+ G I  +Q   +    +   ++  L  AK G   I+    
Sbjct: 175 DLEYIEDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLAMLGLAKGGIEEIIALQK 234

Query: 537 K 537
           +
Sbjct: 235 Q 235



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 30/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G T VL T   D S+     G+    +T  Y     + 
Sbjct: 13  RPVTI-TRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKGQGWVTAEYGMLPRST 71

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  + RE    + +   + ISR+I RS+R         E    V  +V+Q D    
Sbjct: 72  ----HSRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQADGG-- 125

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  AL           M+   P +  +    V    G+ + +    ++    
Sbjct: 126 TRTASITGACVALVDALNWMVEKGMIKQSPLKQMIAAVSVGMYQGEAICDLEYIEDSAAE 185

Query: 174 LDLFVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            D+ V  T+D  ++ V+   EA   + + +L  +       + +I    +
Sbjct: 186 TDMNVVMTEDGRIIEVQGTAEAEPFTHEELLAMLGLAKGGIEEIIALQKQ 235


>gi|317494714|ref|ZP_07953126.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917316|gb|EFV38663.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +E +R +       +   GS L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPEGRTAEQIRPLKLTRHYTKHAEGSVLVEFGETKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGACVALADALNALVAAGKLKANPMKGMVAAVSVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLQLLALARGGIDKIIQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPLKL T    + ++G+VL  +GET VL     +  +     GQ    +T  Y     + 
Sbjct: 12  RPLKL-TRHYTKHAEGSVLVEFGETKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             ++     +   +     + I R+I RS+R         E  +    +V+Q D  +   
Sbjct: 71  HSRMAREAAK--GKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQADGGTRTA 128

Query: 128 VV---------SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLD 175
            +         ++ A  AA  L   P +G V    V  ++GQ V +    ED   +  ++
Sbjct: 129 SITGACVALADALNALVAAGKLKANPMKGMVAAVSVGIVDGQAVCDLEYVEDSAAETDMN 188

Query: 176 LFVSGTQDAVLMVELEAN 193
           + +      ++ V+  A 
Sbjct: 189 VVML-EDGRMIEVQGTAE 205


>gi|121593343|ref|YP_985239.1| ribonuclease PH [Acidovorax sp. JS42]
 gi|120605423|gb|ABM41163.1| RNAse PH [Acidovorax sp. JS42]
          Length = 244

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R I           G+ L   G+T+ +   ++    +E+      G+   
Sbjct: 8   RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASV----EEKVPPHKRGSGEG 63

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V    A    T++I  +
Sbjct: 64  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D           +  P++  VA +++G+V+       L 
Sbjct: 124 VIQADGGTRTAAITGAWVAAQDAVNTLLAAGKISASPLTGAVAAVSVGIVQGQP----LL 179

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    S   M   L  A++G   +L    
Sbjct: 180 DLEYVEDVACDTDMNVVMTGTGHYVEVQGTAEGATFSRQEMDQLLALAEKGIAELLALQR 239

Query: 537 K 537
           +
Sbjct: 240 Q 240



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 20/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T      ++GAVL  +G T VL T   +  +     G     +T  Y     + 
Sbjct: 18  RPIRI-TRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTAEYGMLPRST 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +F      E   Q+  +V+Q D  +    
Sbjct: 77  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQADGGTRTAA 135

Query: 129 V---------SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           +         ++    AA  +S  P  G V    V  + GQ +L+    ED      +++
Sbjct: 136 ITGAWVAAQDAVNTLLAAGKISASPLTGAVAAVSVGIVQGQPLLDLEYVEDVACDTDMNV 195

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            ++GT   V +    E    S   +   +         ++    +
Sbjct: 196 VMTGTGHYVEVQGTAEGATFSRQEMDQLLALAEKGIAELLALQRQ 240


>gi|282865124|ref|ZP_06274177.1| ribonuclease PH [Streptomyces sp. ACTE]
 gi|282560047|gb|EFB65596.1| ribonuclease PH [Streptomyces sp. ACTE]
          Length = 245

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 97/251 (38%), Gaps = 26/251 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +      + +   L  A  G + +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEAAPFDRSELDALLDLATAGCVDLAKL 234

Query: 535 MSKVLSESRLQ 545
             + L+ +  +
Sbjct: 235 QQEALARTLGE 245



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  ++G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIVDGTPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAK 223
            +++  +G     + V+  A     D   +   +      C  + +   +   
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAEAAPFDRSELDALLDLATAGCVDLAKLQQEALA 240


>gi|84501187|ref|ZP_00999392.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
 gi|84390478|gb|EAQ02966.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
          Length = 237

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G+ +   GS L   GDT  I   T+    +++    + G+  
Sbjct: 1   MRPSGRDLSEMRAVSIETGVTKHAEGSCLIKVGDTHVICTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 117 DVIQADGGTRCASITGGWVALRLAVNKLMKAGDVVTDPLVDPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    S + M   +  A++G   +  + 
Sbjct: 173 LDLDYPEDSEAGVDGNFVMTGSGRLIEVQMSAEGATYSRDQMNQLVDLAEKGVSELAEKQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAACA 237



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG + + ++G+ L   G+T V+ T   +  +     G     +T  Y     + 
Sbjct: 12  RAVSIETG-VTKHAEGSCLIKVGDTHVICTATIEDRVPPFIKGSGLGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  ----TSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 125 TRCASITGGWVALRLAVNKLMKAGDVVTDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   + + +  E    S D +   +         + E   
Sbjct: 185 VDGNFVMTGSGRLIEVQMSAEGATYSRDQMNQLVDLAEKGVSELAEKQK 233


>gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Lutiella nitroferrum 2002]
 gi|224603358|gb|EEG09534.1| ribonuclease PH [Lutiella nitroferrum 2002]
          Length = 238

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R ++   G  +   GS L   GDT+ I   ++    DE     L G  +
Sbjct: 1   MRPSSRPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASV----DESVPGFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R     G  S R     RL  R++  V+         ++I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              PI   VA +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAFVALHDAISGLIAQGKLQESPIRDFVAAVSVGVF----EGRPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T SG    +Q   +    S   +   L+ A++G   ++   
Sbjct: 173 LDLDYLEDSACETDMNVVMTGSGHFVEVQGTAEGVPFSRAELDAMLRLAEQGVGELIAIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 92/233 (39%), Gaps = 33/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + L  G   + ++G+VL  +G+T V+ T   D S+     G+    +T  Y     + 
Sbjct: 12  RRVTLTRG-YTKHAEGSVLVEFGDTKVICTASVDESVPGFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
           G      +RRE    + +     I R+I RS+R +       E   Q+  +V+Q D    
Sbjct: 71  G----SRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL   +SGL         P    V    V    G+ VL+    ED   +
Sbjct: 125 TRTASITGAFVALHDAISGLIAQGKLQESPIRDFVAAVSVGVFEGRPVLDLDYLEDSACE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLA 222
             +++ ++G+   V  V+  A  +  S   +   +         +I AI K A
Sbjct: 185 TDMNVVMTGSGHFV-EVQGTAEGVPFSRAELDAMLRLAEQGVGELI-AIQKAA 235


>gi|62289149|ref|YP_220942.1| ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82699088|ref|YP_413662.1| ribonuclease PH [Brucella melitensis biovar Abortus 2308]
 gi|148559274|ref|YP_001258205.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161618161|ref|YP_001592048.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163842442|ref|YP_001626846.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189023423|ref|YP_001934191.1| ribonuclease PH [Brucella abortus S19]
 gi|225626711|ref|ZP_03784750.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237814642|ref|ZP_04593640.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|254690474|ref|ZP_05153728.1| ribonuclease PH [Brucella abortus bv. 6 str. 870]
 gi|254694963|ref|ZP_05156791.1| ribonuclease PH [Brucella abortus bv. 3 str. Tulya]
 gi|254696594|ref|ZP_05158422.1| ribonuclease PH [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700978|ref|ZP_05162806.1| ribonuclease PH [Brucella suis bv. 5 str. 513]
 gi|254705349|ref|ZP_05167177.1| ribonuclease PH [Brucella suis bv. 3 str. 686]
 gi|254707138|ref|ZP_05168966.1| ribonuclease PH [Brucella pinnipedialis M163/99/10]
 gi|254709319|ref|ZP_05171130.1| ribonuclease PH [Brucella pinnipedialis B2/94]
 gi|254713260|ref|ZP_05175071.1| ribonuclease PH [Brucella ceti M644/93/1]
 gi|254716387|ref|ZP_05178198.1| ribonuclease PH [Brucella ceti M13/05/1]
 gi|254718387|ref|ZP_05180198.1| ribonuclease PH [Brucella sp. 83/13]
 gi|254731507|ref|ZP_05190085.1| ribonuclease PH [Brucella abortus bv. 4 str. 292]
 gi|256030842|ref|ZP_05444456.1| ribonuclease PH [Brucella pinnipedialis M292/94/1]
 gi|256060312|ref|ZP_05450485.1| ribonuclease PH [Brucella neotomae 5K33]
 gi|256158871|ref|ZP_05456725.1| ribonuclease PH [Brucella ceti M490/95/1]
 gi|256254248|ref|ZP_05459784.1| ribonuclease PH [Brucella ceti B1/94]
 gi|256258730|ref|ZP_05464266.1| ribonuclease PH [Brucella abortus bv. 9 str. C68]
 gi|256368637|ref|YP_003106143.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260169746|ref|ZP_05756557.1| ribonuclease PH [Brucella sp. F5/99]
 gi|260546446|ref|ZP_05822186.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260567190|ref|ZP_05837660.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260756028|ref|ZP_05868376.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759252|ref|ZP_05871600.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760975|ref|ZP_05873318.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885049|ref|ZP_05896663.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215305|ref|ZP_05929586.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261218173|ref|ZP_05932454.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261221399|ref|ZP_05935680.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|261314614|ref|ZP_05953811.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316830|ref|ZP_05956027.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261320979|ref|ZP_05960176.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261324287|ref|ZP_05963484.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261751499|ref|ZP_05995208.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261756063|ref|ZP_05999772.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|261759287|ref|ZP_06002996.1| ribonuclease PH [Brucella sp. F5/99]
 gi|265983351|ref|ZP_06096086.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|265987900|ref|ZP_06100457.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265997361|ref|ZP_06109918.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|294851571|ref|ZP_06792244.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297247565|ref|ZP_06931283.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306839620|ref|ZP_07472424.1| ribonuclease PH [Brucella sp. NF 2653]
 gi|306842542|ref|ZP_07475193.1| ribonuclease PH [Brucella sp. BO2]
 gi|306844440|ref|ZP_07477030.1| ribonuclease PH [Brucella sp. BO1]
 gi|75497456|sp|Q57FK3|RNPH_BRUAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123546812|sp|Q2YP33|RNPH_BRUA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228268|sp|A5VNA8|RNPH_BRUO2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043754|sp|A9M7B8|RNPH_BRUC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043755|sp|B0CJ32|RNPH_BRUSI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736890|sp|B2S8G4|RNPH_BRUA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62195281|gb|AAX73581.1| Rph, ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82615189|emb|CAJ10128.1| 3' exoribonuclease:Ribonuclease PH [Brucella melitensis biovar
           Abortus 2308]
 gi|148370531|gb|ABQ60510.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161334972|gb|ABX61277.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163673165|gb|ABY37276.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189018995|gb|ACD71717.1| Ribonuclease PH [Brucella abortus S19]
 gi|225618368|gb|EEH15411.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237789479|gb|EEP63689.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|255998795|gb|ACU47194.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260096553|gb|EEW80429.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260156708|gb|EEW91788.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260669570|gb|EEX56510.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671407|gb|EEX58228.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676136|gb|EEX62957.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874577|gb|EEX81646.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916912|gb|EEX83773.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260919983|gb|EEX86636.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|260923262|gb|EEX89830.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261293669|gb|EEX97165.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261296053|gb|EEX99549.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261300267|gb|EEY03764.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261303640|gb|EEY07137.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261739271|gb|EEY27267.1| ribonuclease PH [Brucella sp. F5/99]
 gi|261741252|gb|EEY29178.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745816|gb|EEY33742.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|262551829|gb|EEZ07819.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|264660097|gb|EEZ30358.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|264661943|gb|EEZ32204.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|294820160|gb|EFG37159.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297174734|gb|EFH34081.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306275253|gb|EFM57003.1| ribonuclease PH [Brucella sp. BO1]
 gi|306287398|gb|EFM58878.1| ribonuclease PH [Brucella sp. BO2]
 gi|306405318|gb|EFM61593.1| ribonuclease PH [Brucella sp. NF 2653]
          Length = 238

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R IS + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G  +AL +                +   VA I+ G+     + + 
Sbjct: 117 DVIQADGGTRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHVAAISCGIY----EGVP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED +   D     T   GI  +Q   +    SE      ++ A+ G   +++ 
Sbjct: 173 VLDLDYAEDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKMAVA 238



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 35/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +  E G +++ ++G+ L  +G+T VL T   +  +  G         +T  Y     +
Sbjct: 12  RAISFERG-VSKHAEGSCLVKFGDTHVLCTASLEEKV-PGWMRNTGKGWVTAEYGMLPRS 69

Query: 70  VGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
            G+     +RRE    +       I R+I RS+R +       E Q+    +V+Q D   
Sbjct: 70  TGE----RMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                ++     AL                   +  V         G  VL+    ED  
Sbjct: 125 -TRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYAEDSV 183

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +   +  ++G +  ++ ++  A  +  SE+     +    +    ++        
Sbjct: 184 AETDSNFVMTG-KGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|227354797|ref|ZP_03839214.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
 gi|227165115|gb|EEI49946.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
          Length = 251

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 24/249 (9%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R   R ++ VR I+      +   GS L   GDT+ +   T+    +E     L G
Sbjct: 11  DNTMRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKG 66

Query: 369 TQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             +      Y  LP AT   +      G  + R +   RL  R++   +   A   +T+ 
Sbjct: 67  QGQGWVTAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTIT 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V    D 
Sbjct: 127 VDCDVIQADGGTRTASISGACVALVDALNKMVAEGKLKKSPLKSMVAAVSVGIV----DG 182

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L D+   ED     D  V   D G +  +Q   +    S   ++  L  AK G   I 
Sbjct: 183 QPLCDLEYVEDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIF 242

Query: 533 NEMSKVLSE 541
               + L +
Sbjct: 243 EAQKEALKQ 251



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 34/238 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 25  RPITI-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                    R  + T   + I R+I RS+R         E    V  +V+Q D       
Sbjct: 84  NSRNAREAAR-GKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQADGG--TRT 140

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            S+  A  AL+           L   P +  V    V  ++GQ + +    ED       
Sbjct: 141 ASISGACVALVDALNKMVAEGKLKKSPLKSMVAAVSVGIVDGQPLCDLEYVEDSA----- 195

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE-------CKPVIEAISKLAKMCAKE 228
            + T   V+M++ +   +      +   F H E        K  +E I +  K   K+
Sbjct: 196 -AETDMNVVMID-DGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251


>gi|257878167|ref|ZP_05657820.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257881049|ref|ZP_05660702.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257889634|ref|ZP_05669287.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257892426|ref|ZP_05672079.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260559214|ref|ZP_05831400.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|261207747|ref|ZP_05922432.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289565822|ref|ZP_06446264.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|293563126|ref|ZP_06677591.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|294614004|ref|ZP_06693934.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|294617101|ref|ZP_06696767.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|294623312|ref|ZP_06702174.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|314939893|ref|ZP_07847099.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|314943740|ref|ZP_07850479.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|314949696|ref|ZP_07853014.1| ribonuclease PH [Enterococcus faecium TX0082]
 gi|314953242|ref|ZP_07856181.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|314993678|ref|ZP_07859026.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|314997405|ref|ZP_07862356.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|257812395|gb|EEV41153.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257816707|gb|EEV44035.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257825994|gb|EEV52620.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257828805|gb|EEV55412.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260074971|gb|EEW63287.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|260078130|gb|EEW65836.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289162365|gb|EFD10223.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|291593111|gb|EFF24690.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|291596638|gb|EFF27865.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|291597280|gb|EFF28469.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|291604904|gb|EFF34373.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|313588540|gb|EFR67385.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|313591852|gb|EFR70697.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|313594708|gb|EFR73553.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|313597603|gb|EFR76448.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|313640856|gb|EFS05436.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|313643954|gb|EFS08534.1| ribonuclease PH [Enterococcus faecium TX0082]
          Length = 451

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 125/318 (39%), Gaps = 30/318 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    +      L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----ENSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    I     +    G   N M+   + A    +   
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                       +  E T  + I    P +    RN+    G  ++ +++      ++++
Sbjct: 234 KHALLTEFAQNDERIEETKTIIIATRNPGKAEEFRNMFKEAGYHVKTLLDYPELP-DVEE 292

Query: 590 DGTVKIASSSLAEIEAAR 607
            G+    ++ L     A+
Sbjct: 293 TGSTFEENARLKAETIAQ 310



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 104/274 (37%), Gaps = 44/274 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATIENSVPPFLRETGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  S----TRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS 173
               S+  A  AL            LS  P +  +    V    +G  V +    ED  +
Sbjct: 125 TRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAA 184

Query: 174 L-DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           L D+ +  T+    + ++    + +   + + + + FG N  + +I           KE 
Sbjct: 185 LVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLI-----------KEQ 233

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
                 +F++ +E + +   + + ++   P K  
Sbjct: 234 KHALLTEFAQNDERIEE--TKTIIIATRNPGKAE 265


>gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R86a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +S Q   L+   GS L   G T+ I   ++     E   + L G  +
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRR----EIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +   +   R         R+  RA+   +  T     T+ +  
Sbjct: 57  GWITAEYSMLPRATQQRTIRESVQGRIGGATHEIQRMIGRAMRTAVELTKIGERTIWVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A+ DA +           PI   VA +++G+V D     IL
Sbjct: 117 DVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVND----RIL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V GT SG ++ +    +    +++ ++  L  A++G   ++   
Sbjct: 173 LDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQ 232

Query: 536 SKVL 539
            K+ 
Sbjct: 233 KKLY 236



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 27/215 (12%)

Query: 29  GAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           G+ L ++G+T V+ T      V +     GQ +     +   R      I      R   
Sbjct: 26  GSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGG 85

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T     I RMI R++R         E    V  +V+Q D        ++  A  A+  +
Sbjct: 86  AT---HEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGG--TRTAAITGAFVAVADA 140

Query: 142 GL-----------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA---VL 186
            +           P +  V    V  +N + +L+   +ED    +D+ V GT       +
Sbjct: 141 IIKLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEV 200

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
               E    ++D ++  +         +IE   KL
Sbjct: 201 HTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|188532222|ref|YP_001906019.1| ribonuclease PH [Erwinia tasmaniensis Et1/99]
 gi|226736908|sp|B2VF76|RNPH_ERWT9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188027264|emb|CAO95107.1| Ribonuclease PH (tRNA nucleotidyltransferase) [Erwinia tasmaniensis
           Et1/99]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATI----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V        L
Sbjct: 117 DVLQADGGTRTASITGACVALADALNHLVSTGKLKANPMKGMVAAISVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L+ A+ G   ++   
Sbjct: 173 CDLEYVEDAAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 22/201 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RPVTL-TRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNHLVSTGKLKANPMKGMVAAISVGIVNGEALCDLEYVEDAAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE 197
            V  T+D  + +E++     E
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGE 207


>gi|145632517|ref|ZP_01788251.1| ribonuclease PH [Haemophilus influenzae 3655]
 gi|144986712|gb|EDJ93264.1| ribonuclease PH [Haemophilus influenzae 3655]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINSLIENGTLKINPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++ L         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINSLIENGTLKINPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  + 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREA 235


>gi|209519146|ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160]
 gi|209500446|gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160]
          Length = 245

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR    +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MSNDTQRPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASI----SESVPPFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D              PI+  VA I++G+     
Sbjct: 117 LNLDCDVIQADGGTRTASITGAFVAAHDAVAKLLATGRIESSPINDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S + M   L  A  G   
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMSALLDLASDGIST 232

Query: 531 ILNEMSKV 538
           ++ +    
Sbjct: 233 LIAKQKAA 240



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     S+      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASISESVPPFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLNLDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A +  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVAKLLATGRIESSPINDYVAAISVGVYDGVPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            ++G     + ++  A  +  S D +   +    +    +I    
Sbjct: 195 VMTG-AGGFVEIQGTAEGVPFSRDEMSALLDLASDGISTLIAKQK 238


>gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010]
 gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010]
          Length = 239

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R +S      +   GS L   GDT+ +   ++    +E+    L G+  
Sbjct: 1   MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASV----EERIPPFLRGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   +     G    R +   RL  R++   +   A    ++ I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAFVALQDAINHLIKTKKLKKSPLFGQVASVSVGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D  V   D+G    +Q   +      + +   L  A  G   ++ + 
Sbjct: 173 LDLDYDEDSSAETDMNVVMNDAGAYIELQGTAEGHAFRADELQSMLDLASHGIEQLMIKQ 232

Query: 536 SKVLSES 542
              L+ES
Sbjct: 233 RDALAES 239



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T VL T   +  +     G     +T  Y     + G        R 
Sbjct: 22  KHAEGSVLVEFGDTKVLCTASVEERIPPFLRGSGEGWVTAEYGMLPRSTGSRMQREAAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL- 138
            +     + I R+I RS+R   +     E    +  +V+Q D        S+  A  AL 
Sbjct: 81  GKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDCDVIQADGG--TRTASITGAFVALQ 138

Query: 139 -MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFV 178
             ++ L         P  G V    V   NG  VL+   DED   +  +++ +
Sbjct: 139 DAINHLIKTKKLKKSPLFGQVASVSVGIYNGTPVLDLDYDEDSSAETDMNVVM 191


>gi|260913198|ref|ZP_05919680.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
 gi|260632785|gb|EEX50954.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +   R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPNERANHQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV----EESVPRFLKGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              PI   VA I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGACVALCDAINGLVANGTLKTNPIKGLVAAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    + + ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFNHDELLTLLDLAKQGCETIFVAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 RQA 235



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + S+     GQ+   +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A  AL   ++GL         P +G V    V  ++GQ V +    ++    
Sbjct: 125 TRTASITGACVALCDAINGLVANGTLKTNPIKGLVAAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAISKLAKM 224
            D+ V   +D  + +E++     E    D +L  +      C+ +  A  +    
Sbjct: 185 TDMNVVMMEDGRM-IEVQGTAEGEPFNHDELLTLLDLAKQGCETIFVAQRQALAA 238


>gi|145635181|ref|ZP_01790886.1| ribonuclease PH [Haemophilus influenzae PittAA]
 gi|145267602|gb|EDK07601.1| ribonuclease PH [Haemophilus influenzae PittAA]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 24/236 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQI 228



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    + +   + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++ L         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  ++
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREV 235


>gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
          Length = 244

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     +      E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTSEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAAL 234

Query: 535 MSKVLSES 542
            ++ L +S
Sbjct: 235 QAEALGQS 242



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 28/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T  +   +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTSEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  ++G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            +++  +G     + V+  A         +   +      C  +    ++ 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAALQAEA 238


>gi|296113600|ref|YP_003627538.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|295921294|gb|ADG61645.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|326562662|gb|EGE12964.1| ribonuclease PH [Moraxella catarrhalis 103P14B1]
 gi|326564700|gb|EGE14918.1| ribonuclease PH [Moraxella catarrhalis 46P47B1]
 gi|326568642|gb|EGE18713.1| ribonuclease PH [Moraxella catarrhalis BC7]
 gi|326568768|gb|EGE18838.1| ribonuclease PH [Moraxella catarrhalis BC8]
 gi|326572636|gb|EGE22625.1| ribonuclease PH [Moraxella catarrhalis CO72]
 gi|326574233|gb|EGE24181.1| ribonuclease PH [Moraxella catarrhalis 101P30B1]
 gi|326575018|gb|EGE24947.1| ribonuclease PH [Moraxella catarrhalis O35E]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R I       +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASI----EAGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++     G  S R     RL  R++  +L  +     T+ I  
Sbjct: 57  GWLTAEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA +++G+    +   +L
Sbjct: 117 DVIQADGGTRTASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGV----NQGRVL 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G   +Q   +    +       L  A+ G   I+   
Sbjct: 173 LDLDYAEDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQ 232

Query: 536 SKV 538
            +V
Sbjct: 233 KQV 235



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+     +  + ++G+VL  +G+T VL T   +  +     GQ    LT  Y     A 
Sbjct: 12  RPIHF-IRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G           + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  G-TRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL 176
            S+  A+ AL+           L+  P  G V    V    G+ +L+    ED     DL
Sbjct: 128 ASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYAEDSTCDTDL 187

Query: 177 FVSGTQ-DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  TQ    + ++  A +   +       +         +IEA  ++
Sbjct: 188 NVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQV 235


>gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201]
 gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201]
          Length = 244

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 26/250 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R I+   G  ++  GS+L   G T+ +   +L     E     L G  R
Sbjct: 1   MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLT----EGVPRWLKGEGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 57  GWVTAEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-------MDAGV------PISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL        D GV      P++  VA +++G++    D +
Sbjct: 117 DVLQADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGII----DGV 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  V  T SG    +Q   +      + +   L  A  G   +  
Sbjct: 173 PMLDLPYVEDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQ 232

Query: 534 EMSKVLSESR 543
              + L  +R
Sbjct: 233 IQRETLESTR 242



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  + Q++G+ L  +G T VL T      +     G+    +T  Y     A 
Sbjct: 12  RPITITRGW-SEQAEGSALIEFGGTRVLCTASLTEGVPRWLKGEGRGWVTAEYAMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 71  S-TRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL------PFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  A  AL         +G+      P    V    V  I+G  +L+    ED   + 
Sbjct: 128 ASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPMLDLPYVEDVRAET 187

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
            +++ V+G+ D V  V+  A       D +   +      C  + +   +
Sbjct: 188 DMNVVVTGSGDFV-EVQGTAEGAPFRRDELDALLDLAVAGCSQLAQIQRE 236


>gi|157149261|ref|YP_001456580.1| ribonuclease PH [Citrobacter koseri ATCC BAA-895]
 gi|166228276|sp|A8ARN1|RNPH_CITK8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157086466|gb|ABV16144.1| hypothetical protein CKO_05101 [Citrobacter koseri ATCC BAA-895]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASISGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 18/196 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D  +    
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFV 178
           +S    + A  L+ L         P +G V    V  +NG+ + +    ++     D+ V
Sbjct: 130 ISGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDMNV 189

Query: 179 SGTQDA-VLMVELEAN 193
             T+D  ++ V+  A 
Sbjct: 190 VMTEDGRIIEVQGTAE 205


>gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594]
 gi|122544511|sp|Q2NAJ7|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594]
          Length = 237

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ + G  +   GS L   GDT+ +   ++    +E+    L G  +
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASV----EERLPPWLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT          G  S R     RL  R++  V+         + +  
Sbjct: 57  GWVTGEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       LM+ G     PI+  +A I+ G+     +   +
Sbjct: 117 DVIQADGGTRTASISGAWIALRLAVSGLMEQGQIKDDPITGKIAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D      + G I   Q   +     E  ++  L+ A+ G   I    
Sbjct: 173 LDLDYAEDSNADADANFVLIEGGKIAEAQATAEGATYDEEGLMRLLRLAQIGCAQIFKSQ 232

Query: 536 SKVLS 540
            +   
Sbjct: 233 DEATK 237



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 20/228 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L  +G+T VL T   +  L     G+    +T  Y     A 
Sbjct: 12  RAITIETG-YTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQGWVTGEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       + +     I R+I RS+R +       E Q+    +V+Q D  +    
Sbjct: 71  -HTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDCDVIQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           +S    +  L +SGL         P  G +        NG  VL+    ED       + 
Sbjct: 130 ISGAWIALRLAVSGLMEQGQIKDDPITGKIAAISCGIYNGTPVLDLDYAEDSNADADANF 189

Query: 177 F-VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             + G + A      E     E+ ++  +      C  + ++  +  K
Sbjct: 190 VLIEGGKIAEAQATAEGATYDEEGLMRLLRLAQIGCAQIFKSQDEATK 237


>gi|297529172|ref|YP_003670447.1| ribonuclease PH [Geobacillus sp. C56-T3]
 gi|297252424|gb|ADI25870.1| ribonuclease PH [Geobacillus sp. C56-T3]
          Length = 460

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 38/287 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATV----EEKVPSFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+              +PI   +A  ++G+     +  ++
Sbjct: 117 DVIQADGGTRTASITGAYVALVLALAKLVEEGKLEALPIRDFLAATSVGI---DPEHGVI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T +G    +Q   +    S   +   L+ A+ G   ++   
Sbjct: 174 LDLDYNEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQ 233

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
                  R  LGE+  R+       ++ R+  G GG  ++ IV  T 
Sbjct: 234 -------RCALGEWAARIG------EKKRS--GRGGHRVKEIVIATK 265



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 32/233 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G     +T  Y     A  +       + 
Sbjct: 22  KHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWITAEYGMLPRATEQRNVREASK- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R +       E    +  +V+Q D        S+  A  AL+
Sbjct: 81  GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQADGG--TRTASITGAYVALV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+   +ED   +  +++ ++G   
Sbjct: 139 LALAKLVEEGKLEALPIRDFLAATSVG-IDPEHGVILDLDYNEDARAKVDMNVVMTGAGQ 197

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS----KLAKMCAKEPI 230
            V  ++    +   S   + + +       + +I        + A    ++  
Sbjct: 198 FV-EIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALGEWAARIGEKKR 249


>gi|307730700|ref|YP_003907924.1| ribonuclease PH [Burkholderia sp. CCGE1003]
 gi|307585235|gb|ADN58633.1| ribonuclease PH [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 92/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTDTTRRPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ETVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  D            G PIS  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVSKLLAAGHIEGSPISDFVAAISVGIY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S   M   L  A  G   
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGIAT 232

Query: 531 ILNEMSKV 538
           ++    + 
Sbjct: 233 LIARQKEA 240



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 86/233 (36%), Gaps = 22/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     ++      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A S   AA  + G P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVSKLLAAGHIEGSPISDFVAAISVGIYDGVPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            ++G     + ++  A  +  S + +   +    +    +I    +  +   +
Sbjct: 195 VMTG-AGGFVEIQGTAEGVPFSREEMNALLDLASDGIATLIARQKEALEYRGE 246


>gi|330859984|emb|CBX70312.1| ribonuclease PH [Yersinia enterocolitica W22703]
          Length = 239

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V   + G
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDG 195



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 24/199 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL         SG     P +G V    V  + G+ + +    ED   +  +
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVELEAN 193
           ++ +      ++ V+  A 
Sbjct: 188 NVVM-MEDGRMIEVQGTAE 205


>gi|255019644|ref|ZP_05291723.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
 gi|254970867|gb|EET28350.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
          Length = 241

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GRD++T+R +       +   GS L   GDT+ +   ++    +++    L G  R
Sbjct: 2   PRPSGRDAQTLRPVEIIRPFTKYAEGSVLIACGDTRVLCTASI----EDKVPPFLKGQGR 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        G    R     RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYGMLPRSTQERMPREAAKGKIGGRTHEIQRLIGRSLRAAVDLEALGERTVWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P    VA +++G+ +D      +
Sbjct: 118 DVLQADGGTRTASITGACIALADALQGLLQRGVLTHNPWRHWVAAVSVGIREDE----AI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  TD G    +Q   +    S   M   L  A+RG   ++   
Sbjct: 174 LDLDYAEDSTAEVDMNVVMTDDGRFVEVQGTAEGAAFSAARMADMLLLARRGIDRLIARQ 233

Query: 536 SKVLSE 541
                 
Sbjct: 234 KSEFPH 239



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 25/216 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV-GKIPGGYLRR 80
           + ++G+VL   G+T VL T   +  +     GQ    +T  Y     +   ++P    + 
Sbjct: 23  KYAEGSVLIACGDTRVLCTASIEDKVPPFLKGQGRGWVTAEYGMLPRSTQERMPREAAK- 81

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL 138
             +       I R+I RS+R         E    +  +V+Q D        S+  A  AL
Sbjct: 82  -GKIGGRTHEIQRLIGRSLRAAVDLEALGERTVWIDCDVLQADGG--TRTASITGACIAL 138

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA-V 185
                       L+  P+   V    V     + +L+    ED    +D+ V  T D   
Sbjct: 139 ADALQGLLQRGVLTHNPWRHWVAAVSVGIREDEAILDLDYAEDSTAEVDMNVVMTDDGRF 198

Query: 186 LMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAIS 219
           + V+  A     S   + D ++        +I    
Sbjct: 199 VEVQGTAEGAAFSAARMADMLLLARRGIDRLIARQK 234


>gi|311741212|ref|ZP_07715036.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303382|gb|EFQ79461.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 242

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + +  R DGR  + +R +           GS L   G+T+ +   ++    +        
Sbjct: 1   MTEFTRADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV----EYGVPRFKR 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT +        G    R     RL  R++   +        T+
Sbjct: 57  DSGEGWLTAEYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
           ++  ++ ++DG +  A++ G+ +AL DA           G P+  P+A +++G++    D
Sbjct: 117 QLDCDVLQADGGTRTASITGAYVALADAIAHLKAEGVVPGEPLLDPIAAVSVGII----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             I  D+  +ED    +D  V   +SG    +Q   + G      +   L  A++G   +
Sbjct: 173 GEICLDLPYEEDSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREELNEMLDVAQKGCREL 232

Query: 532 LNEMSKV 538
           +      
Sbjct: 233 IAAQKAA 239



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL  +G T V+ T          K       LT  Y     A   ++P   ++   + 
Sbjct: 30  GSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTAEYAMLPSATHDRMPRESMK--GKV 87

Query: 85  TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR++ RS+R      +  +N  Q+  +V+Q D        S+  A  AL  + 
Sbjct: 88  KGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQADGG--TRTASITGAYVALADAI 145

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                     G P   P+    V  I+G+  L+   +ED   +  L++ +  + D V  +
Sbjct: 146 AHLKAEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEEDSRAEVDLNVVMQESGDFV-EI 204

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +          + + + +      C+ +I A  
Sbjct: 205 QGTGEHGLFGREELNEMLDVAQKGCRELIAAQK 237


>gi|213579701|ref|ZP_03361527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVAMQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2]
          Length = 254

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI+  V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + SG    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALVDAVNWLRGRGGLVSE-PITGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG+ D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSEA 249


>gi|293569789|ref|ZP_06680876.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
 gi|291587537|gb|EFF19414.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
          Length = 451

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 126/318 (39%), Gaps = 30/318 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAKYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    I     +    G   N M+   + A    +   
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                       +  E T  + I    P +    RN+    G  ++ +++      ++++
Sbjct: 234 KHALLTEFAQNDERIEETKTIIIATRNPGKAEEFRNMFKEAGYHVKTLLDYPELP-DVEE 292

Query: 590 DGTVKIASSSLAEIEAAR 607
            G+    ++ L     A+
Sbjct: 293 TGSTFEENARLKAETIAQ 310



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 104/274 (37%), Gaps = 44/274 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVTAKYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  S----TRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS 173
               S+  A  AL            LS  P +  +    V    +G  V +    ED  +
Sbjct: 125 TRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAA 184

Query: 174 L-DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           L D+ +  T+    + ++    + +   + + + + FG N  + +I           KE 
Sbjct: 185 LVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLI-----------KEQ 233

Query: 230 IVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
                 +F++ +E + +   + + ++   P K  
Sbjct: 234 KHALLTEFAQNDERIEE--TKTIIIATRNPGKAE 265


>gi|16762575|ref|NP_458192.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16767019|ref|NP_462634.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29144064|ref|NP_807406.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56415624|ref|YP_152699.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161505731|ref|YP_001572843.1| ribonuclease PH [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|167549018|ref|ZP_02342777.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995207|ref|ZP_02576297.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233258|ref|ZP_02658316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235339|ref|ZP_02660397.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168241913|ref|ZP_02666845.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168260512|ref|ZP_02682485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464958|ref|ZP_02698850.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818436|ref|ZP_02830436.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442896|ref|YP_002042983.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448918|ref|YP_002047765.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469845|ref|ZP_03075829.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194735193|ref|YP_002116668.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249680|ref|YP_002148665.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264642|ref|ZP_03164716.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364551|ref|YP_002144188.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242269|ref|YP_002217694.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200388670|ref|ZP_03215282.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204928479|ref|ZP_03219678.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|207858971|ref|YP_002245622.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213052654|ref|ZP_03345532.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213425224|ref|ZP_03357974.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213615659|ref|ZP_03371485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213647931|ref|ZP_03377984.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213852853|ref|ZP_03382385.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238910231|ref|ZP_04654068.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289809748|ref|ZP_06540377.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824115|ref|ZP_06543712.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|61234148|sp|P0A2C3|RNPH_SALTY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61234155|sp|P0A2C4|RNPH_SALTI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81599223|sp|Q5PC25|RNPH_SALPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043772|sp|A9MKN2|RNPH_SALAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736931|sp|B5EXE7|RNPH_SALA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736932|sp|B5FM66|RNPH_SALDC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736933|sp|B5R5G7|RNPH_SALEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736935|sp|B4T9Y6|RNPH_SALHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736936|sp|B4SXE4|RNPH_SALNS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736937|sp|B5BI17|RNPH_SALPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736938|sp|B4TZY4|RNPH_SALSV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|25289292|pir||AG0970 RNase PH [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16422302|gb|AAL22593.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16504880|emb|CAD03259.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139700|gb|AAO71266.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56129881|gb|AAV79387.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|160867078|gb|ABX23701.1| hypothetical protein SARI_03907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194401559|gb|ACF61781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407222|gb|ACF67441.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456209|gb|EDX45048.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710695|gb|ACF89916.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632399|gb|EDX50883.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197096028|emb|CAR61615.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197213383|gb|ACH50780.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242897|gb|EDY25517.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291458|gb|EDY30810.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936785|gb|ACH74118.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605768|gb|EDZ04313.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321912|gb|EDZ07110.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205325541|gb|EDZ13380.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327076|gb|EDZ13840.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332556|gb|EDZ19320.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338962|gb|EDZ25726.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344359|gb|EDZ31123.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205350221|gb|EDZ36852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710774|emb|CAR35135.1| RNase PH [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|261248882|emb|CBG26736.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267995995|gb|ACY90880.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160271|emb|CBW19794.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312914760|dbj|BAJ38734.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088154|emb|CBY97916.1| RNase PH [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226787|gb|EFX51837.1| Ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322612900|gb|EFY09852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618965|gb|EFY15852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625258|gb|EFY22085.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630074|gb|EFY26847.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634266|gb|EFY31001.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635833|gb|EFY32542.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643029|gb|EFY39606.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645043|gb|EFY41574.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649857|gb|EFY46280.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653064|gb|EFY49399.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661117|gb|EFY57345.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662394|gb|EFY58607.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667272|gb|EFY63438.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674351|gb|EFY70444.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678441|gb|EFY74502.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680947|gb|EFY76981.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687117|gb|EFY83090.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132094|gb|ADX19524.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195841|gb|EFZ81013.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198242|gb|EFZ83348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200860|gb|EFZ85930.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206614|gb|EFZ91572.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210473|gb|EFZ95359.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216239|gb|EGA00967.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220461|gb|EGA04915.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225325|gb|EGA09559.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228439|gb|EGA12570.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234260|gb|EGA18348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237245|gb|EGA21312.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244764|gb|EGA28768.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323245861|gb|EGA29851.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250956|gb|EGA34832.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257296|gb|EGA40995.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262220|gb|EGA45781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264569|gb|EGA48073.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268858|gb|EGA52316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625479|gb|EGE31824.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|332990583|gb|AEF09566.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
 gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R+I       +   GS L   GDT+ I   ++    +E+      G+  
Sbjct: 1   MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASV----EERVPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   +     G  S R     RL  R++  V+        T++I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P++  +A I++G+ +       +
Sbjct: 117 DVIQADGGTRTASITGAYVALQDAVSSLIEKGLLTETPVTDAIAAISVGIYQGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V    SG    +Q   +    S   M   L+ A+ G + ++   
Sbjct: 173 LDLDYLEDSACDTDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQ 232

Query: 536 SKV 538
              
Sbjct: 233 QAA 235



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 85/236 (36%), Gaps = 32/236 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL   G+T V+ T   +  +     G     +T  Y     + 
Sbjct: 12  REIRI-TRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
           G      ++RE    + +     I R+I RS+R +    K  +   Q+  +V+Q D    
Sbjct: 71  G----SRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+  A  AL            L+  P    +    V    G  VL+    ED    
Sbjct: 125 TRTASITGAYVALQDAVSSLIEKGLLTETPVTDAIAAISVGIYQGTPVLDLDYLEDSACD 184

Query: 173 -SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             +++ + G+   V +    E +  S   +   +    N    +I+     A +  
Sbjct: 185 TDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQQ--AALAG 238


>gi|261346766|ref|ZP_05974410.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
 gi|282565165|gb|EFB70700.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
          Length = 237

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I       +   GS L   GDT+ +   T+    ++     L G  +
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCTATV----EDGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  + R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+VK       L
Sbjct: 117 DVIQADGGTRTASISGACVALVDALNNMIAQGKITKSPLKAMVAAVSVGIVKQE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D G +  +Q   +    S   ++  L  AK G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKI-TRNYTKHAEGSVLIEFGDTKVLCTATVEDGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   +RE    + T   + I R+I RS+R      K  +    +  +V+Q D    
Sbjct: 71  N----SRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL+           ++  P +  V    V  +  + + +    ED   +
Sbjct: 125 TRTASISGACVALVDALNNMIAQGKITKSPLKAMVAAVSVGIVKQEALCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
             +++ +      ++ V+  A 
Sbjct: 185 TDMNVVM-MDDGRMIEVQGTAE 205


>gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319]
 gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319]
          Length = 248

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R +S     L+   GS L   GDT+ I   ++    D++    + G  +
Sbjct: 1   MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASI----DDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +PI   +A  ++G+  +      +
Sbjct: 117 DVIQADGGTRTASITGAFVAMVLAFGKLVEENKLTEIPIRDYLAATSVGIHGENS----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T SG    +Q   +    S   +   L   ++G   ++ + 
Sbjct: 173 LDLNYEEDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQ 232

Query: 536 SKVLSE 541
            +VL  
Sbjct: 233 KEVLDH 238



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 81/214 (37%), Gaps = 25/214 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL + G+T V+ T   D  +     GQ    +T  Y     A  +       +  + T
Sbjct: 26  GSVLISVGDTKVICTASIDDRVPPFMRGQGKGWITAEYSMLPRATAQRNIRESSK-GKVT 84

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +    K  +    +  +V+Q D        S+  A  A++L+  
Sbjct: 85  GRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQADGG--TRTASITGAFVAMVLAFG 142

Query: 142 ---------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                     +P    +    V       +L+   +ED   +  +++ ++G+   V  ++
Sbjct: 143 KLVEENKLTEIPIRDYLAATSVGIHGENSILDLNYEEDSTAEVDMNIVMTGSGQFV-ELQ 201

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
               + +   + +   +  G      +IE   ++
Sbjct: 202 GTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEV 235


>gi|146309763|ref|YP_001174837.1| ribonuclease PH [Enterobacter sp. 638]
 gi|166991085|sp|A4W506|RNPH_ENT38 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145316639|gb|ABP58786.1| RNAse PH [Enterobacter sp. 638]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVAFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLIAAGKLKKNPMKGMVAAVSVGIVNGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED +   D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSVAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVAFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ED     D+
Sbjct: 128 ASITGACVALADALNKLIAAGKLKKNPMKGMVAAVSVGIVNGEALCDLEYVEDSVAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|212712586|ref|ZP_03320714.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
 gi|212684802|gb|EEB44330.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  + R +   RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D           A  P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASISGACVALVDALNNMVAQGKLAKSPLKSMVAAVSVGIVGQEG----L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 29/187 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPIKI-TRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   +RE    + T   + I R+I RS+R      K  +    +  +V+Q D    
Sbjct: 71  N----SRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL+           L+  P +  V    V  +  + + +    ED   +
Sbjct: 125 TRTASISGACVALVDALNNMVAQGKLAKSPLKSMVAAVSVGIVGQEGLCDLEYVEDSAAE 184

Query: 172 GSLDLFV 178
             +++ +
Sbjct: 185 TDMNVVM 191


>gi|326565518|gb|EGE15689.1| ribonuclease PH [Moraxella catarrhalis 12P80B1]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R I       +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRSNNRQNNELRPIYFIRQYTKHAEGSVLVCFGDTKVLCTASI----EAGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++     G  S R     RL  R++  +L  +     T+ I  
Sbjct: 57  GWLTAEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA +++G+    +   +L
Sbjct: 117 DVIQADGGTRTASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGV----NQGRVL 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G   +Q   +    +       L  A+ G   I+   
Sbjct: 173 LDLDYAEDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQ 232

Query: 536 SKV 538
            +V
Sbjct: 233 KQV 235



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+     +  + ++G+VL  +G+T VL T   +  +     GQ    LT  Y     A 
Sbjct: 12  RPIYF-IRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G           + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  G-TRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL 176
            S+  A+ AL+           L+  P  G V    V    G+ +L+    ED     DL
Sbjct: 128 ASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYAEDSTCDTDL 187

Query: 177 FVSGTQ-DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  TQ    + ++  A +   +       +         +IEA  ++
Sbjct: 188 NVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQV 235


>gi|260582842|ref|ZP_05850627.1| ribonuclease PH [Haemophilus influenzae NT127]
 gi|260094055|gb|EEW77958.1| ribonuclease PH [Haemophilus influenzae NT127]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    D   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIV----DGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   +++ L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLILLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    + +   + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++ L         P +G V    V  ++GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  + 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLILLDLAKQGCNQIFIAQREA 235


>gi|145631050|ref|ZP_01786825.1| ribonuclease PH [Haemophilus influenzae R3021]
 gi|144983335|gb|EDJ90817.1| ribonuclease PH [Haemophilus influenzae R3021]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    +   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIV----EGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 RKA 235



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    + +   + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++GL         P +G V    V  + GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  K 
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKA 235


>gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 249

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +E +R +       +   GS     GDT+ +  V++    +++    + GT  
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSI----EDKVPPFMKGTGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN LP +T               R +   RL  RA+  V+   A    TL I  
Sbjct: 57  GWITAEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +    + G+ +AL+D              PI   VA +++G+V +      +
Sbjct: 117 DVIQADGGTRTTAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEK----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  TD G    +Q   +    +   +   L   ++G   ++N  
Sbjct: 173 LDLCYQEDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRTELNELLDLGEKGIKQMINVQ 232

Query: 536 SK 537
            +
Sbjct: 233 KE 234



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+V    G+T VL  V  +  +     G     +T  Y     + 
Sbjct: 12  RHVKV-TRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWITAEYNMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
                  + R  +     + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  ETRKIRDIAR-LKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----LSGL------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            ++  A  AL+     L  +      P    V    V  +N + +L+    ED +  +D+
Sbjct: 128 TAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEKILDLCYQEDSKAKVDM 187

Query: 177 FVSGTQDA-VLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +  T +   + V+    +   +   + + +  G    K +I    +  KM
Sbjct: 188 NIIMTDEGSFVEVQGTGEESPYTRTELNELLDLGEKGIKQMINVQKESLKM 238


>gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035]
 gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035]
          Length = 238

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G+L+   GS L   GDT  +   T+    +E+    + G+  
Sbjct: 1   MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATI----EERVPPFVKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 117 DVIQADGGTRCASITGGWVALKLAVQKLMKAGDVLSDPLIDPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T    +  +QM  +    S + M   L  A+ G   ++ + 
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVDQLVAKQ 232

Query: 536 SKVLSE 541
            +    
Sbjct: 233 REATGA 238



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG + + ++G+ L   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RSVSIETGVL-KHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  G----SRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL            +LS  P   PV         GQ VL+   P   E 
Sbjct: 125 TRCASITGGWVALKLAVQKLMKAGDVLSD-PLIDPVAAVSCGIYAGQPVLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
               +  ++GT+  + + +  E    S D +   +         ++    + 
Sbjct: 184 GVDGNFIMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVDQLVAKQREA 235


>gi|119900252|ref|YP_935465.1| ribonuclease PH [Azoarcus sp. BH72]
 gi|166228264|sp|A1KCM3|RNPH_AZOSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119672665|emb|CAL96579.1| ribonuclease PH [Azoarcus sp. BH72]
          Length = 239

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +       +   GS L   GDT+ +   ++    +E     L G  R
Sbjct: 1   MRPSQRQANELRPVRLTRRYTRHAEGSVLVEFGDTRVLCTASV----EEAVPPFLKGKGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  R++  V+   A     + I  
Sbjct: 57  GWVTAEYGMLPRATHTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           A  P++  VA I++G+V    D + +
Sbjct: 117 DVLQADGGTRTASITGAYVALHDALEGLVAAGKLAANPMTDFVAAISVGIV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S GI  +Q   +    S   +   +  A+ G   ++   
Sbjct: 173 LDLDYTEDSGCDTDMNVVMTGSGGIIEVQGTAEGTPFSRTELNALIDLAEAGIGRLVELQ 232

Query: 536 SKVLSES 542
              L+ +
Sbjct: 233 KAALAGA 239



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP++L T R  R ++G+VL  +G+T VL T   + ++     G+    +T  Y     A 
Sbjct: 12  RPVRL-TRRYTRHAEGSVLVEFGDTRVLCTASVEEAVPPFLKGKGRGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + + T     I R+I RS+R +       E QV+   +V+Q D       
Sbjct: 71  -HTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL            L+  P    V    V  ++G  VL+    ED G    +
Sbjct: 128 ASITGAYVALHDALEGLVAAGKLAANPMTDFVAAISVGIVDGVPVLDLDYTEDSGCDTDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++G+   ++ V+   E    S   +   I         ++E       
Sbjct: 188 NVVMTGS-GGIIEVQGTAEGTPFSRTELNALIDLAEAGIGRLVELQKAALA 237


>gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
 gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
          Length = 242

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 25/245 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R IS Q    +   GS L   GDT  +   ++     E+    L  T + 
Sbjct: 5   RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVA----EEVPPFLQNTGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   L        T+ + +++ 
Sbjct: 61  WLTAEYRMLPTATQQRQPRETLKVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD--------------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++DGS+  A + G  +AL D               G P+ + VA +++G+V+      +L
Sbjct: 121 QADGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVRGE----VL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   + G +  +Q   + G    + ++  L  A+ G   +L   
Sbjct: 177 VDLCYEEDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRAQ 236

Query: 536 SKVLS 540
            + L+
Sbjct: 237 RETLN 241



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 37/234 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RP+  +     R + G+VL  +G+T VL T      +     F        LT  Y+   
Sbjct: 15  RPISFQR-HFTRYAPGSVLVKFGDTHVLCTASVAEEVPP---FLQNTGQGWLTAEYRMLP 70

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
            A         R   + +     I R+I RS+R    F K       V  +V+Q D   S
Sbjct: 71  TA---TQQRQPRETLKVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQADG--S 125

Query: 126 PHVVSMVAASAALMLS--------------GLPFEGPVVGAQVDYINGQYVLNPRLDED- 170
               ++     AL  +              G P    V    V  + G+ +++   +ED 
Sbjct: 126 TRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVRGEVLVDLCYEEDS 185

Query: 171 --QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISK 220
             +  +++ ++  Q A++ ++   EA       +L  +       + ++ A  +
Sbjct: 186 QAEVDMNIVMN-EQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRAQRE 238


>gi|257884710|ref|ZP_05664363.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
 gi|257820548|gb|EEV47696.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
          Length = 451

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 126/318 (39%), Gaps = 30/318 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ ++L             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVSLKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +D+   ED    +D  +  T+SG    I     +    G   N M+   + A    +   
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQ---IRNVIGMGGKVIRGIVEQTGAKVNIDD 589
                       +  E T  + I    P +    RN+    G  ++ +++      ++++
Sbjct: 234 KHALLTEFAQNDERIEETKTIIIATRNPGKAEEFRNMFKEAGYHVKTLLDYPELP-DVEE 292

Query: 590 DGTVKIASSSLAEIEAAR 607
            G+    ++ L     A+
Sbjct: 293 TGSTFEENARLKAETIAQ 310



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 104/272 (38%), Gaps = 40/272 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D  + 
Sbjct: 71  S----TRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQADGGTR 126

Query: 126 PHVVSMVAASAALML---------SGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGSL- 174
              ++    S  L +         S  P +  +    V    +G  V +    ED  +L 
Sbjct: 127 TASITGAFVSLKLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAALV 186

Query: 175 DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           D+ +  T+    + ++    + +   + + + + FG N  + +I           KE   
Sbjct: 187 DMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLI-----------KEQKH 235

Query: 232 IDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYV 263
               +F++ +E + +   + + ++   P K  
Sbjct: 236 ALLTEFAQNDERIEE--TKTIIIATRNPGKAE 265


>gi|256823650|ref|YP_003147613.1| ribonuclease PH [Kangiella koreensis DSM 16069]
 gi|256797189|gb|ACV27845.1| ribonuclease PH [Kangiella koreensis DSM 16069]
          Length = 238

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R I+      +   GS L   G+T+ +   ++     +     L G  +
Sbjct: 1   MRPSGRTSNQLRPITITRQFTKHAEGSVLIEFGETKVLCNASV----VDNVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +  +     T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRMDREASRGKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+S+AL D              P+   V  +++G+ K       +
Sbjct: 117 DVLQADGGTRTASISGASIALHDALFHMRKTGMIKTNPLKHMVGSVSVGIYKGTP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +   ++ G   +Q   +    + + ++  L+  K+G   I +  
Sbjct: 173 LDLDYLEDSAAETDMNLVMDENGGFIEIQGTAEGETFTGDELMQMLELGKQGIREIFDLQ 232

Query: 536 SKVLS 540
            K ++
Sbjct: 233 HKAVA 237



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+ + T +  + ++G+VL  +GET VL    V D   +   G+    +T  Y     + 
Sbjct: 12  RPITI-TRQFTKHAEGSVLIEFGETKVLCNASVVDNVPRFLKGKGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                    R  +     + I R+I RS+R      +  +N   V  +V+Q D       
Sbjct: 71  HSRMDREASR-GKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  AS AL            +   P +  V    V    G  +L+    ED   +  +
Sbjct: 128 ASISGASIALHDALFHMRKTGMIKTNPLKHMVGSVSVGIYKGTPILDLDYLEDSAAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +L +      + +    E    + D ++  +  G    + + +   K   +
Sbjct: 188 NLVMDENGGFIEIQGTAEGETFTGDELMQMLELGKQGIREIFDLQHKAVAV 238


>gi|254428098|ref|ZP_05041805.1| ribonuclease PH [Alcanivorax sp. DG881]
 gi|196194267|gb|EDX89226.1| ribonuclease PH [Alcanivorax sp. DG881]
          Length = 238

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R++S          GS L   G T+ +   ++    +E     L G  +
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGGTKVLCTASV----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   S      G    R +   RL  R++   +   A    T+ +  
Sbjct: 57  GWLTAEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P++  V  +++G+     +   +
Sbjct: 117 DVLQADGGTRTASISGACVALVDAFTHLLETKKIKSDPLTGLVGAVSVGMY----EGAPV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G   +Q   +    +       L  A++G   I+   
Sbjct: 173 LDLDYAEDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDSLLGLAEKGIGEIIKAQ 232

Query: 536 SKV 538
              
Sbjct: 233 QVA 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 73/223 (32%), Gaps = 43/223 (19%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGYLR 79
           ++G+VL  +G T VL T     S+++G   F        LT  Y     +     G    
Sbjct: 24  AEGSVLVAFGGTKVLCTA----SVEEGVPRFLKGKGQGWLTAEYSMLPRSTHTRSGREAT 79

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAA 137
           R  +     + I R+I RS+R         E    +  +V+Q D        S+  A  A
Sbjct: 80  R-GKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQADGG--TRTASISGACVA 136

Query: 138 LM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVL 186
           L+           +   P  G V    V    G  VL+    ED        +GT   V+
Sbjct: 137 LVDAFTHLLETKKIKSDPLTGLVGAVSVGMYEGAPVLDLDYAEDSN------AGTDMNVV 190

Query: 187 MVE----------LEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           M +           E    + +     +         +I+A  
Sbjct: 191 MTQQGGFIEIQGSAEGAPFTREQSDSLLGLAEKGIGEIIKAQQ 233


>gi|91204195|emb|CAJ71848.1| strongly similar to ribonuclease PH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 238

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R ++      + + GS L   G+T+ I   ++    +E     +  T  
Sbjct: 1   MRVDNRKYDELRPVTITRNFTKYSAGSVLVESGNTKVICTASI----EEYVPPHIKNTGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT          G  S R     RL  R++  +   T     T+ I  
Sbjct: 57  GWITAEYSLLPGATPSRVPRESTKGKISGRTHEIQRLIGRSLRAICDLTLLKERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL D              P+   VA I+ G+V +    I L
Sbjct: 117 DVIQADGGTRTAAITGSYIALADAVQWLLDKNVIKENPLINSVAAISAGIVNN----IAL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG    +Q   +     E+ +   L  A +G   I    
Sbjct: 173 LDLCYAEDASAQVDMNFVMTGSGKYIEVQGTGEEYAFDEDQLAKMLTLAHKGICEITEIQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 KKA 235



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 77/230 (33%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD---FFPLTVNYQERTYAV 70
           RP+ + T    + S G+VL   G T V+ T   +  +           +T  Y     A 
Sbjct: 12  RPVTI-TRNFTKYSAGSVLVESGNTKVICTASIEEYVPPHIKNTGTGWITAEYSLLPGAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             ++P    +   + +     I R+I RS+R +       E    +  +V+Q D      
Sbjct: 71  PSRVPRESTK--GKISGRTHEIQRLIGRSLRAICDLTLLKERTIWIDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             ++  +  AL            +   P    V       +N   +L+    ED      
Sbjct: 127 TAAITGSYIALADAVQWLLDKNVIKENPLINSVAAISAGIVNNIALLDLCYAEDASAQVD 186

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++  ++G+   +  V+    +    ED +   +   H     + E   K 
Sbjct: 187 MNFVMTGSGKYI-EVQGTGEEYAFDEDQLAKMLTLAHKGICEITEIQKKA 235


>gi|17988058|ref|NP_540692.1| ribonuclease PH [Brucella melitensis bv. 1 str. 16M]
 gi|225851706|ref|YP_002731939.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|256045962|ref|ZP_05448834.1| ribonuclease PH [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112675|ref|ZP_05453596.1| ribonuclease PH [Brucella melitensis bv. 3 str. Ether]
 gi|256264784|ref|ZP_05467316.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563245|ref|ZP_05833731.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992375|ref|ZP_06104932.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994118|ref|ZP_06106675.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|21759402|sp|Q8YEV2|RNPH_BRUME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808582|sp|C0RGM7|RNPH_BRUMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17983807|gb|AAL52956.1| ribonuclease ph [Brucella melitensis bv. 1 str. 16M]
 gi|225640071|gb|ACN99984.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|260153261|gb|EEW88353.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|262765099|gb|EEZ11020.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263003441|gb|EEZ15734.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095193|gb|EEZ18862.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408195|gb|ADZ65260.1| ribonuclease PH [Brucella melitensis M28]
 gi|326537910|gb|ADZ86125.1| ribonuclease PH [Brucella melitensis M5-90]
          Length = 238

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R IS + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G  +AL +                +   VA I+ G+     + + 
Sbjct: 117 DVIQADGGTRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHVAAISCGIY----EGVP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED +   D     T   GI  +Q   +    SE      ++ A+ G   +++ 
Sbjct: 173 VLDLDYAEDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKMAVA 238



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 35/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +  E G +++ ++G+ L  +G+T VL T   +  +  G         +T  Y     +
Sbjct: 12  RTISFERG-VSKHAEGSCLVKFGDTHVLCTASLEEKV-PGWMRNTGKGWVTAEYGMLPRS 69

Query: 70  VGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
            G+     +RRE    +       I R+I RS+R +       E Q+    +V+Q D   
Sbjct: 70  TGE----RMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                ++     AL                   +  V         G  VL+    ED  
Sbjct: 125 -TRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYAEDSV 183

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +   +  ++G +  ++ ++  A  +  SE+     +    +    ++        
Sbjct: 184 AETDSNFVMTG-KGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
 gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
          Length = 242

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 24/241 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL                PI + VA I+ G+V      + L D+  
Sbjct: 125 DGGTRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISAGIV----GGVPLLDLDY 180

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  +  T SG I  +Q   +    S   +   +  A++G   +L      LS
Sbjct: 181 PEDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240

Query: 541 E 541
            
Sbjct: 241 A 241



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL ++       G+    P    V       + G  +L+    ED    
Sbjct: 128 TRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISAGIVGGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S + +   I         ++    
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQ 236


>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 246

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +  +R+DGR  + +R +  +VG+L++T GS+    G T+    V +G RE   +  
Sbjct: 8   RLIDENGLRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGV-IGPREV--HPK 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    +      Y+    +  E   +G   RREI   ++ R A+  V+         + 
Sbjct: 65  HLELPDKGVINCRYHMASFSVDERKPLGMT-RREIELSKVIREALETVVFLEEFPRMMID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG +  A +  +SLAL DAG+P++  +A IA+G V    D +++ DI+  ED
Sbjct: 124 IFVEVIQADGGTRTAGITAASLALADAGIPMADMIAAIAVGKV----DGVLVLDINEQED 179

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             G  D  VA     + I  +Q++ ++     +  +   QQA +   H+
Sbjct: 180 KYGEADMPVAIAPHLNSIVLLQLNGRMTPEEVDKGLEMAQQAVQKIHHM 228



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 95/231 (41%), Gaps = 23/231 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +++E G + + +DG+     G T + A V+  R +       P    +   Y   +++
Sbjct: 26  RKMRMEVGVLEK-TDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVINCRYHMASFS 84

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+    T  EI +S++I  ++  +    +  +    + + V+Q D      
Sbjct: 85  VDE------RKPLGMTRREIELSKVIREALETVVFLEEFPRMMIDIFVEVIQADGG--TR 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              + AAS AL  +G+P    +    V  ++G  VL+    ED   +  + + ++   ++
Sbjct: 137 TAGITAASLALADAGIPMADMIAAIAVGKVDGVLVLDINEQEDKYGEADMPVAIAPHLNS 196

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
           +++++L      E+     +  G    +  ++ I  +     K    ++ +
Sbjct: 197 IVLLQLNGRMTPEE-----VDKGLEMAQQAVQKIHHMQIEALKRKYRVEPE 242


>gi|197106932|ref|YP_002132309.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
 gi|226736923|sp|B4RC87|RNPH_PHEZH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196480352|gb|ACG79880.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
          Length = 238

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+ +   GS L   G T+ +V  +L    +E     L G  +
Sbjct: 1   MRPSDRRPDLLRPVTLETGVNRYAEGSCLASFGHTKVLVTASL----EEGVPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGRREAAQGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A       L++ GV    PI   VA I+ G+         +
Sbjct: 117 DVVQADGGTRTAAITGAWVALRLATRYLLEEGVIATDPILDQVAAISCGVFSGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D     T +G I  +Q   +  G SE         A++G   +    
Sbjct: 173 LDLDYEEDSNAEADANFVLTGAGDIVEIQATGEKRGFSEAEFEALFALARKGIGELCELQ 232

Query: 536 SKVL 539
               
Sbjct: 233 RAAT 236



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 24/225 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LETG + R ++G+ LA++G T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RPVTLETG-VNRYAEGSCLASFGHTKVLVTASLEEGVPPFLRGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q+    +V+Q D       
Sbjct: 71  -HTRGRREAAQGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITVDCDVVQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL           +++  P    V        +G  VL+   +ED   +   
Sbjct: 128 AAITGAWVALRLATRYLLEEGVIATDPILDQVAAISCGVFSGTPVLDLDYEEDSNAEADA 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +  ++G  D V +    E    SE                + E  
Sbjct: 188 NFVLTGAGDIVEIQATGEKRGFSEAEFEALFALARKGIGELCELQ 232


>gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1]
 gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1]
 gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2]
 gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2]
 gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1]
 gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1]
 gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2]
 gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1]
 gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2]
 gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1]
 gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1]
 gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1]
 gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1]
 gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3]
 gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2]
 gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1]
 gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1]
 gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1]
 gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2]
 gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1]
 gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2]
 gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3]
 gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2]
 gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3]
 gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1]
 gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1]
 gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2]
 gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3]
 gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1]
 gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2]
 gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2]
 gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1]
 gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1]
 gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1]
 gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266]
          Length = 254

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI+  V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + SG    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALVDAVNWLRGRGGLVSE-PITGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG+ D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|297618203|ref|YP_003703362.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
 gi|297146040|gb|ADI02797.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
          Length = 241

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  +  R I+   G  +   GS L   GDT+ I   ++    +++    L GT   
Sbjct: 3   RTSGRAFDEPRPINIITGYTKFAPGSVLIETGDTRVICTASV----EDKVPPFLKGTGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T   +      G  S R     RL  RA+  V+  +A    T+ I  +
Sbjct: 59  WVTAEYSMLPGSTPTRTAREVTRGRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL           +   +P++  VA  ++G+V      I L 
Sbjct: 119 VIQADGGTRTASITGAFVALYLAMQKLKESGIIERLPVTDYVAATSVGIV----RGIPLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  T+SG    +Q   +    S++ +   L+ AK+G   ++ +  
Sbjct: 175 DLEYGEDSEAEVDMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQK 234

Query: 537 KV 538
            V
Sbjct: 235 AV 236



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 28/228 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + TG   + + G+VL   G+T V+ T   +  +     G     +T  Y       
Sbjct: 13  RPINIITG-YTKFAPGSVLIETGDTRVICTASVEDKVPPFLKGTGTGWVTAEYSMLP--- 68

Query: 71  GKIPGGYLRR--ESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSP 126
           G  P    R     R +     I R+I R++R +       E    +  +V+Q D     
Sbjct: 69  GSTPTRTAREVTRGRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDCDVIQADGG--T 126

Query: 127 HVVSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSL 174
              S+  A  AL L       SG+    P    V    V  + G  +L+    ++ +  +
Sbjct: 127 RTASITGAFVALYLAMQKLKESGIIERLPVTDYVAATSVGIVRGIPLLDLEYGEDSEAEV 186

Query: 175 DLFVSGTQ-DAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           D+ V  T+    + ++  A     S+D + + +         +I    
Sbjct: 187 DMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQK 234


>gi|86609199|ref|YP_477961.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502063|sp|Q2JKT3|RNPH_SYNJB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86557741|gb|ABD02698.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 244

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 25/248 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R +  +R +S +    +   GS L   G T  +   ++     E+    L  T + 
Sbjct: 5   RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVA----EEVPPFLQNTGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   L        T+ + +++ 
Sbjct: 61  WLTAEYRMLPGATQQRQPREMLKLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD--------------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++DG +  A + G  +AL D               G P+ + VA +++G+V+      +L
Sbjct: 121 QADGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGE----VL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   + G    +Q   +    S   ++  L+ A+ G   +L   
Sbjct: 177 VDLCYEEDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQ 236

Query: 536 SKVLSESR 543
            + L+  R
Sbjct: 237 RQALNLER 244



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 45/239 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RP+  E     R + G+VL  +G T VL T      +     F        LT  Y+   
Sbjct: 15  RPVSFER-HFTRYAPGSVLVKFGHTHVLCTASVAEEVPP---FLQNTGQGWLTAEYRM-- 68

Query: 68  YAVGKIPGGYLRRESRP----TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHD 121
                +PG   +R+ R     +     I R+I RS+R    F K       V  +V+Q D
Sbjct: 69  -----LPGATQQRQPREMLKLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQAD 123

Query: 122 LESSPHVVSMVAASAALMLS--------------GLPFEGPVVGAQVDYINGQYVLNPRL 167
                   ++     AL  +              G P    V    V  + G+ +++   
Sbjct: 124 GG--TRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCY 181

Query: 168 DED---QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +ED   +  +++ ++  Q + + ++  A     S   +L  +       + +++A  + 
Sbjct: 182 EEDSQAEVDMNIVMN-EQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQA 239


>gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
 gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
          Length = 248

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 21/244 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R D R ++ +R +  + G  +   GS+L   G T+ +   T+    +E+    L GT  
Sbjct: 2   PRRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATV----EERVPFFLKGTGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP A  E +      G  S R     RL  RA+  V+   A    T+ I  
Sbjct: 58  GWVTAEYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAG---------VPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A+V G+ +AL++A           P+   VA +++G+  + +    L D
Sbjct: 118 DVLQADGGTRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEP---LLD 174

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  +  T +G    +Q   +    +   +   L   ++G   ++++   
Sbjct: 175 LCYEEDSAAMVDMNIVMTGAGAFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKV 234

Query: 538 VLSE 541
            L +
Sbjct: 235 ALGD 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+++E G   R +DG+ L   G T V+     +    +   FF        +T  Y   
Sbjct: 13  RPVRIERG-YQRYADGSALIETGHTRVVCAATVE----ERVPFFLKGTGTGWVTAEYSML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
             A  +       R    +     I R+I R++R +       E    +  +V+Q D   
Sbjct: 68  PGAGAERTAREAVR-GHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQADGG- 125

Query: 125 SPHVVSMVAASAALMLS--------GL-PFEGPVVGAQVDY-INGQYVLNPRLDEDQG-- 172
                S+  A  AL+ +        G+ P    V    V      + +L+   +ED    
Sbjct: 126 -TRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEEDSAAM 184

Query: 173 -SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++G    V +    E    +   +   +  G    + +I+   
Sbjct: 185 VDMNIVMTGAGAFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQK 233


>gi|227833921|ref|YP_002835628.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
 gi|262184924|ref|ZP_06044345.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
 gi|227454937|gb|ACP33690.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
          Length = 242

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 93/247 (37%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R DGR  + +R +           GS L   G+T+ +   ++    +        
Sbjct: 1   MTDFTRADGRALDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV----EFGVPRFKK 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT E        G    R     RL  R++   +  +     T+
Sbjct: 57  DSGEGWLTAEYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
           ++  ++ ++DG +  A++ G+ +AL DA           G P+  P+A +++G++    D
Sbjct: 117 QLDCDVLQADGGTRTASITGAYVALADAIAYLKEEGVVPGEPLLDPIAAVSVGII----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             +  D+  +ED    +D  V   + G    +Q   + G      +   L  A+ G   +
Sbjct: 173 GHVCLDLPYEEDSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRAELNDMLDVAQAGCAQL 232

Query: 532 LNEMSKV 538
           ++     
Sbjct: 233 IDAQKAA 239



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL  +G T V+ T          K       LT  Y     A   ++P   ++   + 
Sbjct: 30  GSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTAEYAMLPSATHERMPRESMK--GKV 87

Query: 85  TENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR++ RS+R      +  +N  Q+  +V+Q D        S+  A  AL  + 
Sbjct: 88  KGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQADGG--TRTASITGAYVALADAI 145

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                     G P   P+    V  I+G   L+   +ED   +  L++ +    D V  +
Sbjct: 146 AYLKEEGVVPGEPLLDPIAAVSVGIIDGHVCLDLPYEEDSRAEVDLNVVMQEGGDFV-EI 204

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +            + D +      C  +I+A  
Sbjct: 205 QGTGEHGLFGRAELNDMLDVAQAGCAQLIDAQK 237


>gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
 gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
          Length = 240

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR    +R+I+          GS L   G T+ +   ++     E     L G+ + 
Sbjct: 3   RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASV----SEGVPRFLRGSGQG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G    R +   RL  R++  V+       YT+ +  +
Sbjct: 59  WITAEYGMLPRSTGSRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+D              P+++ VA +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGACVALVDALNGLQRDKALKTDPLNQLVASVSVGVYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAG-TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V    D G+  +Q   +        +   L  A+ G   +     
Sbjct: 175 DLDYPEDSSADTDMNVVMGEDGGLIEVQGTAEGATFDRATLNQMLDLAEAGIRDLFEAQR 234

Query: 537 KVLSE 541
           K L++
Sbjct: 235 KALAQ 239



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 73/218 (33%), Gaps = 23/218 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL        +     G     +T  Y     + G        R  +
Sbjct: 25  AEGSVLVEFGRTKVLCNASVSEGVPRFLRGSGQGWITAEYGMLPRSTGSRMDREAAR-GK 83

Query: 84  PTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAAL--M 139
                + I R+I RS+R +   K        V  +V+Q D        S+  A  AL   
Sbjct: 84  QGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDCDVIQADGG--TRTASITGACVALVDA 141

Query: 140 LSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL-FVSGTQDAVLMV 188
           L+GL         P    V    V    G  VL+    ED     D+  V G    ++ V
Sbjct: 142 LNGLQRDKALKTDPLNQLVASVSVGVYQGVPVLDLDYPEDSSADTDMNVVMGEDGGLIEV 201

Query: 189 ELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAKM 224
           +  A   + D   +   +       + + EA  K    
Sbjct: 202 QGTAEGATFDRATLNQMLDLAEAGIRDLFEAQRKALAQ 239


>gi|254439955|ref|ZP_05053449.1| ribonuclease PH [Octadecabacter antarcticus 307]
 gi|198255401|gb|EDY79715.1| ribonuclease PH [Octadecabacter antarcticus 307]
          Length = 235

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 22/234 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R IS ++ + +   GS L   GDTQ +   ++    DE+    L  +  
Sbjct: 1   MRPSGRTIDGMRPISIEIDVTRHAEGSCLIKCGDTQVLCTASI----DERVPSFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT    R       S R     RL  R++   + + A     + I  +
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAKNGQSGRTQEIQRLIGRSLRAGIDRVALGERQIVIDCD 116

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +A       LM+AG     P+  PVA ++ G+         + 
Sbjct: 117 VIQADGGTRCASITGGWVALKLAVQKLMNAGDVISDPLLIPVAAVSCGIYAGQS----VL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+   ED    +D     T   +  +QM  +    + + M   +  A +G   +
Sbjct: 173 DLDYPEDSEAGVDGNFVMTADKLIEIQMSAEGSTFTRDQMNAMMDLAHKGIAEL 226



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 81/237 (34%), Gaps = 38/237 (16%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQ 64
             RP+ +E   + R ++G+ L   G+T VL T     S+ +    F        +T  Y 
Sbjct: 10  GMRPISIEI-DVTRHAEGSCLIKCGDTQVLCTA----SIDERVPSFLKNSGLGWVTAEYG 64

Query: 65  ERTYAVGKIPGGYLRRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQH 120
               A        +RRE+    +     I R+I RS+R    +    E Q++   +V+Q 
Sbjct: 65  MLPRATN----TRMRREAKNGQSGRTQEIQRLIGRSLRAGIDRVALGERQIVIDCDVIQA 120

Query: 121 DLESSPHVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---P 165
           D        S+     AL            ++S  P   PV         GQ VL+   P
Sbjct: 121 DGG--TRCASITGGWVALKLAVQKLMNAGDVISD-PLLIPVAAVSCGIYAGQSVLDLDYP 177

Query: 166 RLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
              E     +  ++  +   + +  E +  + D +   +   H     +        
Sbjct: 178 EDSEAGVDGNFVMTADKLIEIQMSAEGSTFTRDQMNAMMDLAHKGIAELTAVQIASV 234


>gi|148827427|ref|YP_001292180.1| ribonuclease PH [Haemophilus influenzae PittGG]
 gi|166228285|sp|A5UG91|RNPH_HAEIG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148718669|gb|ABQ99796.1| ribonuclease PH [Haemophilus influenzae PittGG]
          Length = 238

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 24/236 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    +   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIV----EGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK+G   I
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQI 228



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    + +   + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A+ AL   ++ L         P +G V    V  + GQ V +    ED   +
Sbjct: 125 TRTASITGAAVALCDAINSLIENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYVEDSAAE 184

Query: 172 GSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +++ +      ++ V+   E    S + +L  +      C  +  A  K+
Sbjct: 185 TDMNVVM-MEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKV 235


>gi|326559598|gb|EGE10012.1| ribonuclease PH [Moraxella catarrhalis 7169]
 gi|326567722|gb|EGE17828.1| ribonuclease PH [Moraxella catarrhalis BC1]
          Length = 238

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R I       +   GS L   GDT+ +   ++    +      L G  +
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASI----EAGVPRWLKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++     G  S R     RL  R++  +L  +     T+ I  
Sbjct: 57  GWLTAEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL+D              P+   VA +++G+    +   +L
Sbjct: 117 DVIQADGGTRTASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGV----NQGRVL 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V      G   +Q   +    +       L  A+ G   I+   
Sbjct: 173 LDLDYAEDSTCDTDLNVVMMQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQ 232

Query: 536 SKV 538
            +V
Sbjct: 233 KQV 235



 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+     +  + ++G+VL  +G+T VL T   +  +     GQ    LT  Y     A 
Sbjct: 12  RPIHF-IRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G           + +     I R+I RS+R +    K  +N   +  +V+Q D       
Sbjct: 71  G-TRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDL 176
            S+  A+ AL+           L+  P  G V    V    G+ +L+    ED     DL
Sbjct: 128 ASISGAAVALIDALEHLQRRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYAEDSTCDTDL 187

Query: 177 -FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
             V       + ++  A +   +       +         +IEA  ++
Sbjct: 188 NVVMMQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQV 235


>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
 gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
          Length = 246

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 8/231 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R+DGR     R I  ++G+  +  GS+   +G+ + +  V  G  E      
Sbjct: 5   ELLSDEGYRLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAV-YGPHEPRGN-R 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   R      ++    +T E  R     ++        ++     +         + 
Sbjct: 63  SRALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ +SDG +    V  ++LAL+DAG+ +   V   ++G +    D + L DIS  E+
Sbjct: 123 IFVEVLQSDGGTLSVCVNAATLALIDAGIALKDYVCACSVGFI----DGVPLVDISSIEE 178

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
                +  VA       I  ++M  ++   +   M+ A  +       I +
Sbjct: 179 SNRGPELTVAVLPKSQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDLHAIFD 229



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 80/194 (41%), Gaps = 19/194 (9%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTYAVGKIPGGYLRR 80
           Q+DG+     G   VLA V      +        D   +   +   T++  +      +R
Sbjct: 34  QADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLVNCQFSMATFSTFE-----RKR 88

Query: 81  ESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
             R  +    ++  I ++           +++  + + V+Q D  +    V + AA+ AL
Sbjct: 89  RPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDGGTLS--VCVNAATLAL 146

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVS--GTQDAVLMVELEANQL 195
           + +G+  +  V    V +I+G  +++   ++E     +L V+       ++++E+ +   
Sbjct: 147 IDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGPELTVAVLPKSQQIVLLEMSSRVH 206

Query: 196 SE--DVVLDAIIFG 207
            +  + +LDA + G
Sbjct: 207 VDNLEKMLDAAMKG 220


>gi|123440458|ref|YP_001004452.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|166228324|sp|A1JHW7|RNPH_YERE8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122087419|emb|CAL10200.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 238

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFQAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALEQ 238



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL         SG     P +G V    V  + G+ + +    ED   +  +
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSAAETDM 187

Query: 175 DLFV 178
           ++ +
Sbjct: 188 NVVM 191


>gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1]
 gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1]
          Length = 243

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 97/251 (38%), Gaps = 24/251 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +R++       +   GS L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSPRPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V+      P T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +A+ DA             PIS  VA I++G+ +   
Sbjct: 117 IHIDCDVIQADGGTRTASITGAFVAVQDAVAKLVADGKLPRSPISDSVAAISVGVYQGTP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               L D+   ED     D  V  T   G+  +Q   +    +   M   L  A++G   
Sbjct: 177 ----LLDLDYAEDSRCDTDMNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGE 232

Query: 531 ILNEMSKVLSE 541
           ++         
Sbjct: 233 LIALQKAAREA 243



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R ++L T    + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A 
Sbjct: 17  REVRL-TRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +        +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRT-IHIDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALMLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  A+  +             P    V    V    G  +L+    ED      
Sbjct: 132 TASITGAFVAVQDAVAKLVADGKLPRSPISDSVAAISVGVYQGTPLLDLDYAEDSRCDTD 191

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G    V +    E    +   +   +         +I       + 
Sbjct: 192 MNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGELIALQKAAREA 243


>gi|62182227|ref|YP_218644.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75479865|sp|Q57I99|RNPH_SALCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62129860|gb|AAX67563.1| RNase PH [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|322716715|gb|EFZ08286.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 238

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 117 DVVQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 128 ASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|22124017|ref|NP_667440.1| ribonuclease PH [Yersinia pestis KIM 10]
 gi|45439910|ref|NP_991449.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
 gi|51594399|ref|YP_068590.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
 gi|108809489|ref|YP_653405.1| ribonuclease PH [Yersinia pestis Antiqua]
 gi|108813966|ref|YP_649733.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|145601101|ref|YP_001165177.1| ribonuclease PH [Yersinia pestis Pestoides F]
 gi|150260892|ref|ZP_01917620.1| ribonuclease PH [Yersinia pestis CA88-4125]
 gi|153946899|ref|YP_001399057.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
 gi|162421592|ref|YP_001604689.1| ribonuclease PH [Yersinia pestis Angola]
 gi|165926075|ref|ZP_02221907.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936276|ref|ZP_02224845.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011471|ref|ZP_02232369.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213648|ref|ZP_02239683.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402127|ref|ZP_02307604.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419312|ref|ZP_02311065.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426642|ref|ZP_02318395.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468220|ref|ZP_02332924.1| ribonuclease PH [Yersinia pestis FV-1]
 gi|170026367|ref|YP_001722872.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
 gi|186893387|ref|YP_001870499.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
 gi|218927265|ref|YP_002345140.1| ribonuclease PH [Yersinia pestis CO92]
 gi|229836156|ref|ZP_04456324.1| ribonuclease PH [Yersinia pestis Pestoides A]
 gi|229839893|ref|ZP_04460052.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841975|ref|ZP_04462130.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904496|ref|ZP_04519607.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|270488496|ref|ZP_06205570.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294502151|ref|YP_003566213.1| ribonuclease PH [Yersinia pestis Z176003]
 gi|21759404|sp|Q8ZJP8|RNPH_YERPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215882|sp|Q66GE1|RNPH_YERPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122382629|sp|Q1C262|RNPH_YERPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122384026|sp|Q1CCZ7|RNPH_YERPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228325|sp|A4TSE2|RNPH_YERPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991087|sp|A7FCS9|RNPH_YERP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736955|sp|B2JYM8|RNPH_YERPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736956|sp|A9R668|RNPH_YERPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736957|sp|B1JQX8|RNPH_YERPY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21956760|gb|AAM83691.1|AE013610_3 RNase PH [Yersinia pestis KIM 10]
 gi|45434765|gb|AAS60326.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
 gi|51587681|emb|CAH19281.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
 gi|108777614|gb|ABG20133.1| RNAse PH [Yersinia pestis Nepal516]
 gi|108781402|gb|ABG15460.1| RNAse PH [Yersinia pestis Antiqua]
 gi|115345876|emb|CAL18734.1| ribonuclease PH [Yersinia pestis CO92]
 gi|145212797|gb|ABP42204.1| RNAse PH [Yersinia pestis Pestoides F]
 gi|149290300|gb|EDM40377.1| ribonuclease PH [Yersinia pestis CA88-4125]
 gi|152958394|gb|ABS45855.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
 gi|162354407|gb|ABX88355.1| ribonuclease PH [Yersinia pestis Angola]
 gi|165915890|gb|EDR34498.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921935|gb|EDR39112.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989617|gb|EDR41918.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205050|gb|EDR49530.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963306|gb|EDR59327.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048502|gb|EDR59910.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054331|gb|EDR64148.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752901|gb|ACA70419.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
 gi|186696413|gb|ACC87042.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
 gi|229678614|gb|EEO74719.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|229690285|gb|EEO82339.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696259|gb|EEO86306.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706604|gb|EEO92610.1| ribonuclease PH [Yersinia pestis Pestoides A]
 gi|262360230|gb|ACY56951.1| ribonuclease PH [Yersinia pestis D106004]
 gi|262364176|gb|ACY60733.1| ribonuclease PH [Yersinia pestis D182038]
 gi|270337000|gb|EFA47777.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294352610|gb|ADE62951.1| ribonuclease PH [Yersinia pestis Z176003]
 gi|320013398|gb|ADV96969.1| ribonuclease PH [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 238

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL         SG     P +G V    V  + G+ + +    ED   +  +
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSAAETDM 187

Query: 175 DLFV 178
           ++ +
Sbjct: 188 NVVM 191


>gi|255657266|ref|ZP_05402675.1| ribonuclease PH [Clostridium difficile QCD-23m63]
 gi|296451893|ref|ZP_06893610.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296879712|ref|ZP_06903687.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
 gi|296259275|gb|EFH06153.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296429301|gb|EFH15173.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
          Length = 449

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 120/318 (37%), Gaps = 31/318 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +   
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +        G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+ +             +PI+  V+ I++G+V        + 
Sbjct: 119 VIQADGGTRTASITGAFVAVAEAIYKLYKAKTVKEMPITNFVSAISVGIVNGTH----ML 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD      +Q   +    S   + + L+  ++G   ++    
Sbjct: 175 DLCYEEDSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRTDLNLLLELGEKGNKELIRLQK 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------VNIDDD 590
           + L E   ++         + I  +    +  +G  +     +    K      ++I +D
Sbjct: 235 EALGEIADEILG-MDYGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKDVDLAGIDIVED 293

Query: 591 GTVKIASSSLAEIEAARE 608
           G     ++ +     A++
Sbjct: 294 GKTFEHNALIKARTIAKK 311



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 98/274 (35%), Gaps = 31/274 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +           +   Y     A 
Sbjct: 13  RPVKI-TRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I R+IR +       E    V  +V+Q D       
Sbjct: 72  QQRKIRDASR-GKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            S+  A  A+            +  +P    V    V  +NG ++L+   +ED +  +D+
Sbjct: 129 ASITGAFVAVAEAIYKLYKAKTVKEMPITNFVSAISVGIVNGTHMLDLCYEEDSKAQVDM 188

Query: 177 FVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
            +  T     + V+    +   S   +   +  G    K +I    +     A E + +D
Sbjct: 189 NIIMTDKCEFVEVQGTGEEKPFSRTDLNLLLELGEKGNKELIRLQKEALGEIADEILGMD 248

Query: 234 SKDFSKLE-------EEMSQMIKEDLRVSCFIPE 260
             +   +        EE+ +++K+       + +
Sbjct: 249 YGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKD 282


>gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B]
 gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund
           17B]
          Length = 249

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR +E +R +       +   GS     GDT+ +  V++    +++    + GT  
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSI----EDKVPPFMKGTGS 56

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 YN LP +T               R +   RL  RA+  V+   A    TL I  
Sbjct: 57  GWITAEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +    + G+ +AL+D              PI   VA +++G+V +      +
Sbjct: 117 DVIQADGGTRTTAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEK----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  TD G    +Q   +    +   +   L   ++G   ++N  
Sbjct: 173 LDLCYQEDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRAELNELLDLGEKGIKQMINVQ 232

Query: 536 SK 537
            +
Sbjct: 233 KE 234



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+V    G+T VL  V  +  +     G     +T  Y     + 
Sbjct: 12  RHVKV-TRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWITAEYNMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
                  + R  +     + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  ETRKIRDIAR-LKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----LSGL------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            ++  A  AL+     L  +      P    V    V  +N + +L+    ED +  +D+
Sbjct: 128 TAISGAFIALVDAVNKLHKIKPFKIYPIRSFVAAVSVGIVNEEKILDLCYQEDSKAKVDM 187

Query: 177 FVSGTQDA-VLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +  T +   + V+    +   +   + + +  G    K +I    +  KM
Sbjct: 188 NIIMTDEGSFVEVQGTGEESPYTRAELNELLDLGEKGIKQMINVQKESLKM 238


>gi|161611257|ref|YP_296683.2| ribonuclease PH [Ralstonia eutropha JMP134]
          Length = 239

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++      +      G+  
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASV----LAKVPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  RA+  V    A   YTL +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + L
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAISTMLRDGLIAASPIRDFVAAVSVGMV----DGVPL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    S   +    + A+ G   ++   
Sbjct: 173 LDLDYAEDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 RQA 235



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           R + L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     A 
Sbjct: 12  RSISL-TRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + T     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  A  A             ++  P    V    V  ++G  +L+    ED      +
Sbjct: 128 AAITGAFVAAHDAISTMLRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYAEDSNCDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    S   +        +    ++    + 
Sbjct: 188 NVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQA 235


>gi|238918030|ref|YP_002931544.1| ribonuclease PH, [Edwardsiella ictaluri 93-146]
 gi|259494120|sp|C5B9C9|RNPH_EDWI9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|238867598|gb|ACR67309.1| ribonuclease PH, putative [Edwardsiella ictaluri 93-146]
          Length = 238

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R +       +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V  G     +
Sbjct: 117 DVIQADGGTRTASITGACVALADALGALVAAGKLKESPLKGMVAAVSVGIVAGG----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KTALEQ 238



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 25/185 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL+L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPLRL-TRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             ++     +   +     + I R+I RS+R         E  +    +V+Q D      
Sbjct: 71  HSRMAREAAK--GKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            L   P +G V    V  + G  V +    ED   +  
Sbjct: 127 TASITGACVALADALGALVAAGKLKESPLKGMVAAVSVGIVAGGAVCDLEYVEDSAAETD 186

Query: 174 LDLFV 178
           +++ +
Sbjct: 187 MNVVM 191


>gi|302545021|ref|ZP_07297363.1| tRNA nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462639|gb|EFL25732.1| tRNA nucleotidyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 241

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVN----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    +   +   L  A  G + +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNSLLDLAVGGCVELAGN 234

Query: 535 MSKV 538
               
Sbjct: 235 QRAA 238



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T   +  +   + G     +T  Y     A 
Sbjct: 13  RPVTIERGW-SKHAEGSVLVSFGDTRVLCTASVNEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  + G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|227502998|ref|ZP_03933047.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
 gi|227076059|gb|EEI14022.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
          Length = 242

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + +  R DGR  + +R +           GS L   G+T+ +   ++    +        
Sbjct: 1   MTEFTRADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV----ELGVPRFKR 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT +        G    R     RL  R++   +        T+
Sbjct: 57  DSGEGWLTAEYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
           ++  ++ ++DG +  A++ G+ +AL DA           G P+  P+A +++G++    D
Sbjct: 117 QLDCDVLQADGGTRTASITGAYVALADAIAHLKSEGVVPGEPLLDPIAAVSVGII----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             I  D+  +ED    +D  V   +SG    +Q   + G      +   L  A++G   +
Sbjct: 173 GEICLDLPYEEDSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSEL 232

Query: 532 LNEMSKV 538
           +      
Sbjct: 233 IAAQKAA 239



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL  +G T V+ T  V     +  +D     LT  Y     A   ++P   +R   + 
Sbjct: 30  GSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTAEYAMLPSATHDRMPRESMR--GKV 87

Query: 85  TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR++ RS+R      +  +N  Q+  +V+Q D        S+  A  AL  + 
Sbjct: 88  KGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQADGG--TRTASITGAYVALADAI 145

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                     G P   P+    V  I+G+  L+   +ED   +  L++ +  + D V  +
Sbjct: 146 AHLKSEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEEDSRAEVDLNVVMQESGDFV-EI 204

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +          + +   +      C  +I A  
Sbjct: 205 QGTGEHGLFGREQLNGMLDVAQKGCSELIAAQK 237


>gi|294637890|ref|ZP_06716159.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291088916|gb|EFE21477.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R +       +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNALVASGKLKASPLKGMVAAVSVGIVAGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  AK G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKDGIGQIIQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 21/183 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL+L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPLRL-TRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL----- 122
             ++     +   +     + I R+I RS+R         E  +    +V+Q D      
Sbjct: 71  HSRMAREAAK--GKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQADGGTRTA 128

Query: 123 ESSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLD 175
             +   V++  A  AL+ SG     P +G V    V  + G+ + +    ED   +  ++
Sbjct: 129 SITGACVALADALNALVASGKLKASPLKGMVAAVSVGIVAGEALCDLEYVEDSAAETDMN 188

Query: 176 LFV 178
           + +
Sbjct: 189 VVM 191


>gi|110677820|ref|YP_680827.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
 gi|123362332|sp|Q16D02|RNPH_ROSDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109453936|gb|ABG30141.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
          Length = 237

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSALIKIGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T S  +  +QM  +    S + M   +  A++G   ++   
Sbjct: 173 MDLDYPEDSEAGVDGNFIMTGSKQLIEVQMSAEGATFSRDQMNQLMDLAEKGVGELVAAQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 KAATA 237



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 83/234 (35%), Gaps = 32/234 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RPVSIETG-FTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL            ++S  P   PV         GQ V++   P   E 
Sbjct: 125 TRCASITGGWVALRLAVNKLMKAGDVISD-PLVDPVAAISCGIYAGQPVMDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
               +  ++G++  + + +  E    S D +   +         ++ A      
Sbjct: 184 GVDGNFIMTGSKQLIEVQMSAEGATFSRDQMNQLMDLAEKGVGELVAAQKAATA 237


>gi|91774399|ref|YP_544155.1| ribonuclease PH [Methylobacillus flagellatus KT]
 gi|122399230|sp|Q1GXA4|RNPH_METFK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91708386|gb|ABE48314.1| RNAse PH [Methylobacillus flagellatus KT]
          Length = 238

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R++       +   GS L   GDT  +   ++    +++    L G  +
Sbjct: 1   MRPSNRAPDQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASV----EDKVPPFLRGRNQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G  S R     RL  R++  V+        T+ +  
Sbjct: 57  GWTTAEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+ +       +
Sbjct: 117 DVIQADGGTRTASITGAYVALHDAVGFMLANDMIQESPLRDAVAAISVGVYQGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +        M   L+ A+ G   +L + 
Sbjct: 173 LDLDYIEDSACDTDMNVVMTGSGGFVEIQGTAEGEPFQRAAMNRMLELAESGIRTLLLKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KEA 235



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 22/180 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T VL T   +  +     G++    T  Y     + G        R 
Sbjct: 22  KHAEGSVLVKFGDTHVLCTASVEDKVPPFLRGRNQGWTTAEYGMLPRSTGSRMDREAAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I RS+R +       E    +  +V+Q D        S+  A  AL 
Sbjct: 81  GKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDCDVIQADGG--TRTASITGAYVALH 138

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
                      +   P    V    V    G  VL+    ED      +++ ++G+   V
Sbjct: 139 DAVGFMLANDMIQESPLRDAVAAISVGVYQGTPVLDLDYIEDSACDTDMNVVMTGSGGFV 198


>gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 248

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 26/239 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR S  +R +  + G  +   GS+L   G+T  +   ++    +E+    L G+ R 
Sbjct: 3   RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTASV----EEKVPQFLRGSGRG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T + ++     G P+ R     RL  R++   +  +     T+ I  +
Sbjct: 59  WVSAEYAMLPRSTHQRTQREISRGKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A +  S +AL+DA            +P+   VA ++ G+V       ++ 
Sbjct: 119 VLQADGGTRTAAITASFVALVDACRWLMSNGLVGSMPVVHQVAAVSAGIVAGE----VML 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG--RLHILN 533
           D+  +ED    +D  V   + G    +Q   +    S       L  A  G  RLH L 
Sbjct: 175 DLCYEEDSSAQVDCNVVMAEDGRFVEIQGTGEDALFSMESFRDMLSLADVGIRRLHALQ 233



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 20/175 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++E G   R ++G+ L  +G T VL T   +  +     G     ++  Y     + 
Sbjct: 13  RPVRIERGC-NRYAEGSALIRWGNTHVLCTASVEEKVPQFLRGSGRGWVSAEYAMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +     + R  +P      I R+I RS+R         E    +  +V+Q D       
Sbjct: 72  HQRTQREISR-GKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCDVLQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
            ++ A+  AL           ++  +P    V       + G+ +L+   +ED  
Sbjct: 129 AAITASFVALVDACRWLMSNGLVGSMPVVHQVAAVSAGIVAGEVMLDLCYEEDSS 183


>gi|222110072|ref|YP_002552336.1| ribonuclease ph [Acidovorax ebreus TPSY]
 gi|221729516|gb|ACM32336.1| ribonuclease PH [Acidovorax ebreus TPSY]
          Length = 244

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R I           G+ L   G+T+ +   ++    +E+      G+   
Sbjct: 8   RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASV----EEKVPPHKRGSGEG 63

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V    A    T++I  +
Sbjct: 64  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D           +  P++  VA +++G+V+       L 
Sbjct: 124 VIQADGGTRTAAITGAWVAAQDAVNTLLAAGKISASPLTGAVAAVSVGIVQGQP----LL 179

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    S   M   L  A++G   ++    
Sbjct: 180 DLEYVEDVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRQEMDQLLALAEKGIAELVALQR 239

Query: 537 K 537
           +
Sbjct: 240 Q 240



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 20/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T      ++GAVL  +G T VL T   +  +     G     +T  Y     + 
Sbjct: 18  RPIRI-TRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTAEYGMLPRST 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +F      E   Q+  +V+Q D  +    
Sbjct: 77  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQADGGTRTAA 135

Query: 129 V---------SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           +         ++    AA  +S  P  G V    V  + GQ +L+    ED      +++
Sbjct: 136 ITGAWVAAQDAVNTLLAAGKISASPLTGAVAAVSVGIVQGQPLLDLEYVEDVACDTDMNV 195

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            ++GT   V +    E    S   +   +         ++    +
Sbjct: 196 VMTGTGHYVEVQGTAEGAAFSRQEMDQLLALAEKGIAELVALQRQ 240


>gi|56694936|ref|YP_165281.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
 gi|81350765|sp|Q5LWF6|RNPH_SILPO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56676673|gb|AAV93339.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
          Length = 237

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R +S + G  +   GS L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         +
Sbjct: 117 DVIQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +  +QM  +    +   +   L  A++G   ++   
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVAAQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 MAATA 237



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RPVSIETG-FTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL            ++S  P   PV         GQ VL+   P   E 
Sbjct: 125 TRCASITGGWVALRLAVNKLMKAGDVISD-PLVDPVAAVSCGIYAGQPVLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
               +  ++G+   + + +  E +  +   +   +         ++ A 
Sbjct: 184 GVDGNFIMTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVAAQ 232


>gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum]
          Length = 245

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  E +R +S + G+     GS L   G+T+ +   ++    +E+    L    +
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASV----EEKVPPFLKDQGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E +      G  S R     RL  R++  V+        T+ I  
Sbjct: 58  GWVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+  A             P+ + +A +++G+V+       +
Sbjct: 118 DVLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEP----V 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +  T+SG    +Q   +    S   +   L   ++G   I+   
Sbjct: 174 LDLCYTEDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIVCQ 233

Query: 536 SKVLSES 542
             V S  
Sbjct: 234 KSVFSFP 240



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R L ++TG     ++G+VL   G T VL T   +  +      Q    +T  Y     + 
Sbjct: 13  RSLSIKTGVNLY-AEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS---KCYKNETQVIINVMQHDLESSPH 127
            +        + + +     I R+I RS+R +        +    +  +V+Q D  +   
Sbjct: 72  HE-RNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRT-ITIDCDVLQADGGTRTA 129

Query: 128 VVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLD 175
            +S    +  L  S L         P    +    V  + G+ VL+    ED   +  ++
Sbjct: 130 SISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEPVLDLCYTEDSGAETDMN 189

Query: 176 LFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           L ++ +   V  ++  A +   S   +   +  G    + +I    
Sbjct: 190 LVMTESGHFV-EIQGTAEETPFSRQTLDTLLGLGEKGIREIIVCQK 234


>gi|257092562|ref|YP_003166203.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045086|gb|ACV34274.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 238

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R +           GS L   GDT+ +   ++    +E       GT  
Sbjct: 1   MRPSQRQPSQLRQVRITRQFTSHAEGSVLIEIGDTRVLCTASV----EEFVPPFRRGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   ++     G  + R     RL  RA+  V    A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHTRTQREAAKGKQTGRTQEIQRLIGRALRAVTDLKALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ LAL DA             P+S  VA I++G+ +       +
Sbjct: 117 DVLQADGGTRCAAITGAWLALNDACAHLLAQGRLVVNPLSDHVAAISVGIYQGSP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S GI  +Q   +    +   M   L  A  G   ++   
Sbjct: 173 LDLDYAEDSSCDTDMNVVMTGSGGIVEIQGTAEGVPFTRGQMNQLLDLADAGIGQLIARQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAQ 238



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 29/228 (12%)

Query: 22  RIARQ----SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIP 74
           RI RQ    ++G+VL   G+T VL T   +  +     G     +T  Y     +     
Sbjct: 15  RITRQFTSHAEGSVLIEIGDTRVLCTASVEEFVPPFRRGTGAGWVTAEYGMLPRST-HTR 73

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMV 132
                 + + T     I R+I R++R +       E Q+    +V+Q D        ++ 
Sbjct: 74  TQREAAKGKQTGRTQEIQRLIGRALRAVTDLKALGERQITLDCDVLQADGG--TRCAAIT 131

Query: 133 AASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFV 178
            A  AL    + L         P    V    V    G  VL+    ED      +++ +
Sbjct: 132 GAWLALNDACAHLLAQGRLVVNPLSDHVAAISVGIYQGSPVLDLDYAEDSSCDTDMNVVM 191

Query: 179 SGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +G+   ++ ++  A  +  +   +   +         +I         
Sbjct: 192 TGS-GGIVEIQGTAEGVPFTRGQMNQLLDLADAGIGQLIARQKAALAQ 238


>gi|167837502|ref|ZP_02464385.1| ribonuclease PH [Burkholderia thailandensis MSMB43]
          Length = 243

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSPRPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RERGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTQLVAAGKIARSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  +  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 173 GGAPVLDLDYDEDSACDTDMNIVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQAGIGE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRLQRAA 240



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T      + +    +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+   DED      
Sbjct: 132 TASITGAFVAAHDAVTQLVAAGKIARSPITDYVAAISVGVFGGAPVLDLDYDEDSACDTD 191

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G    V +    E    S   +   +         ++       + 
Sbjct: 192 MNIVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQAGIGELVRLQRAALEA 243


>gi|207109310|ref|ZP_03243472.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 204

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           +A+RA+   +    Q    +R+VSEI ES+GSSSMA+VC  SLAL  +GV I   VAG+A
Sbjct: 1   MAKRALETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVA 57

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           MG+V +G D  ILSDISG ED  G MDFK+AG   GITAMQMD K+ GI   I+  AL Q
Sbjct: 58  MGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQ 117

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AK+ R HIL  M +   +  +      P  EI  + PD+I  +IG GG+VIR IVE+   
Sbjct: 118 AKKAREHILKIMHEAKEKIVINFSNL-PTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEV 176

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREM 609
           K++++          +   +   +E 
Sbjct: 177 KIDLNKPSGEVKIMGNKERVLKTKEF 202



 Score = 43.7 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI---NGQYVLNP--RLDEDQGSLDLFVSGTQ 182
           + S+ A S AL  SG+     V G  +  +       +L+    L++ +G +D  ++G  
Sbjct: 32  MASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNL 91

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID------SKD 236
           + +  ++++         L+ +     + K   E I K+     KE IVI+      ++ 
Sbjct: 92  EGITAMQMDTKMSGIQ--LEILYQALLQAKKAREHILKIMHEA-KEKIVINFSNLPTTEI 148

Query: 237 FSKLEEEMSQMIKEDLRVSCFIPEKYV 263
           F+   +++ ++I +  RV   I EK+ 
Sbjct: 149 FNVAPDKIVEIIGQGGRVIREIVEKFE 175


>gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
 gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
          Length = 238

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RDI       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTASV----ENKVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G    R +   RL  R++   +  +A   +++ I  
Sbjct: 57  GWITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL+D              P+ + +A  ++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNHLVKEGRLKTSPLKQMIAAFSVGVYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  TD  G   +Q   +     +  +   L+ AK G   +    
Sbjct: 173 LDLDYPEDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQEELDGMLKLAKLGIGQLFEAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAQ 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    R ++G+VL  +G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 12  RDIRI-TRHYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
           G   G    R  +     + I R+I RS+R         E    +  +V+Q D       
Sbjct: 71  GSRMGREAAR-GKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++     AL   L+ L         P +  +    V    G  VL+   P   E +  +
Sbjct: 128 AAITGGCVALVDALNHLVKEGRLKTSPLKQMIAAFSVGVYKGTPVLDLDYPEDSEAETDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++  Q   + ++  A      ++ +   +         + EA       
Sbjct: 188 NVIMT-DQGGFIEIQGTAEGAPFEQEELDGMLKLAKLGIGQLFEAQKAALAQ 238


>gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1]
          Length = 254

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI+  V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALVDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + SG    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALVDAVNWLRGRGGLVSE-PITGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG+ D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|58425360|gb|AAW74397.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 305

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT  +   ++    + +  + L G    
Sbjct: 69  RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASV----ENRVPNFLRGKGEG 124

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 125 WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 184

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 185 VLQADGGTRTAAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEP----VL 240

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 241 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQR 300

Query: 537 KV 538
             
Sbjct: 301 AA 302



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T  V +R      G+    +T  Y     + 
Sbjct: 79  RPVRIER-AFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTAEYGMLPRST 137

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 138 -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 194

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL            +   P  G V    V    G+ VL+   P   +    +
Sbjct: 195 AAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 254

Query: 175 DLFV 178
           ++ +
Sbjct: 255 NVVM 258


>gi|238794526|ref|ZP_04638134.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
 gi|238726106|gb|EEQ17652.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
          Length = 238

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVAAGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQ 232

Query: 536 SKVLSE 541
             VL++
Sbjct: 233 KAVLAQ 238



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D  +    
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS 179
           +S    + A  L+ L         P +G V    V  + G+ + +    ED        +
Sbjct: 130 ISGACVALADALNKLVAAGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSA------A 183

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV-------IEAISKLAKMC 225
            T   V+M+E +   +      +   F H E   +       IE I +  K  
Sbjct: 184 ETDMNVVMME-DGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAV 235


>gi|107022076|ref|YP_620403.1| ribonuclease PH [Burkholderia cenocepacia AU 1054]
 gi|116689020|ref|YP_834643.1| ribonuclease PH [Burkholderia cenocepacia HI2424]
 gi|170732309|ref|YP_001764256.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
 gi|254246044|ref|ZP_04939365.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|123245179|sp|Q1BY75|RNPH_BURCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228269|sp|A0K5H3|RNPH_BURCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736892|sp|B1JXM2|RNPH_BURCC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|105892265|gb|ABF75430.1| RNAse PH [Burkholderia cenocepacia AU 1054]
 gi|116647109|gb|ABK07750.1| RNAse PH [Burkholderia cenocepacia HI2424]
 gi|124870820|gb|EAY62536.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|169815551|gb|ACA90134.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
          Length = 246

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ +   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVA----ERVPEFLRERGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     +   + 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLIAAGKLARSPITDHVAAISVGVY----EGAPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T VL T      + +    +    LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S   AA  L+  P    V    V    G  VL+    ED      +++ ++G     +
Sbjct: 145 AVSTLIAAGKLARSPITDHVAAISVGVYEGAPVLDLDYAEDSRCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +         +++   
Sbjct: 204 EVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQK 238


>gi|227488224|ref|ZP_03918540.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091794|gb|EEI27106.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 237

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 19/243 (7%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R DGR ++ +R++           GS L   G T+ +   ++     E      
Sbjct: 1   MSETFTRADGRATDELREVKITRNFTTNPAGSVLVEFGRTRVMCTASV----QEGVPRFK 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             +        Y  LP AT E +      G    R     RL  R++   +  T    YT
Sbjct: 57  KDSGEGWLTAEYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISK------PVAGIAMGLVKDGDDFIIL 476
           + +  ++ ++DG +  A++ G+ +AL DA   I K      PVA I++GL+    D    
Sbjct: 117 IALDCDVLQADGGTRTASITGAYVALADALASIDKTDALLPPVAAISVGLI----DGHPC 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   ++G    +Q   + G  S   +   L   ++G   ++ + 
Sbjct: 173 LDLPYEEDSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KEA 235



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 18/210 (8%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+ T  V +   +  +D     LT  Y     A  +       +  +  
Sbjct: 31  GSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTAEYAMLPAATNERNPRESVK-GKVK 89

Query: 86  ENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                ISR++ RS+R      K  +    +  +V+Q D        S+  A  AL  +  
Sbjct: 90  GRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQADGG--TRTASITGAYVALADALA 147

Query: 144 PFEG------PVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVELEANQ-- 194
             +       PV    V  I+G   L+ P  ++ +  +D+ +   ++   +      +  
Sbjct: 148 SIDKTDALLPPVAAISVGLIDGHPCLDLPYEEDSRAEVDMNIIMKENGTFVEIQGTGEHG 207

Query: 195 -LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             S + +   +  G   C+ ++E   +   
Sbjct: 208 DFSREQLGTLLDLGEKGCRELVEKQKEALA 237


>gi|118594148|ref|ZP_01551495.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
 gi|118439926|gb|EAV46553.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
          Length = 240

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R+++ +R I       +   GS L   GDT  I   ++    +E     L G  +
Sbjct: 1   MRASNRNADELRPIEFIRSYTKHAEGSVLVKCGDTHVICNASI----EENVPSFLKGKGQ 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    G  S  G  S R     RL  R++  ++        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTSSRMGRESSRGKQSGRTQEIQRLIGRSLRAIIDLKKLGERTIFIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL D              PI   +A I+ G+        IL
Sbjct: 117 DVIQADGGTRTASISGSYVALHDAIEFLLSNKKITESPIIDSIAAISAGI----KGADIL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G    +Q   +    +++ M      A +G   I+N  
Sbjct: 173 LDLDYSEDSECDTDMNFVMTGKGSFVEIQGTAEGIPFTKDEMDQLTNVASKGIQSIINIQ 232

Query: 536 SKVLSESR 543
           S+ L +  
Sbjct: 233 SEALDKKP 240



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 25/218 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+     + ++     G+    +T  Y     +     G    R 
Sbjct: 22  KHAEGSVLVKCGDTHVICNASIEENVPSFLKGKGQGWVTAEYGMLPRSTSSRMGRESSR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I RS+R +    K  +    +  +V+Q D        S+  +  AL 
Sbjct: 81  GKQSGRTQEIQRLIGRSLRAIIDLKKLGERTIFIDCDVIQADGG--TRTASISGSYVALH 138

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                      ++  P    +            +L+    ED      ++  ++G + + 
Sbjct: 139 DAIEFLLSNKKITESPIIDSIAAISAGIKGADILLDLDYSEDSECDTDMNFVMTG-KGSF 197

Query: 186 LMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
           + ++  A  +  ++D +           + +I   S+ 
Sbjct: 198 VEIQGTAEGIPFTKDEMDQLTNVASKGIQSIINIQSEA 235


>gi|78223083|ref|YP_384830.1| ribonuclease PH [Geobacter metallireducens GS-15]
 gi|123571779|sp|Q39UG9|RNPH_GEOMG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78194338|gb|ABB32105.1| RNAse PH [Geobacter metallireducens GS-15]
          Length = 238

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR++ ++R I+     ++   G+ L   GDT+ I   ++    +E     L G   
Sbjct: 1   MRSDGREAGSLRGINITRHYIKHAEGAVLVEFGDTKVICTASV----EESVPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T   S      G    R     RL  R++  V   T     ++ I  
Sbjct: 57  GWVTAEYSMLPRSTHTRSSREAARGKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA            +PI + VA +++G+V    D  IL
Sbjct: 117 DVIQADGGTRTASITGAYVALVDALHLLVERGVLPLLPIKEAVAAVSVGIV----DGNIL 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D     T       +Q   +    +   M      A  G   + +  
Sbjct: 173 LDLNYVEDSAAEVDMNFVMTSSDRFVEVQGTAESEPFTVEQMDGMRVAAVEGIRKLFSIQ 232

Query: 536 SKVLSE 541
           ++ LS 
Sbjct: 233 NEALSR 238



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 23/217 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++GAVL  +G+T V+ T   + S+     G+    +T  Y     +            
Sbjct: 22  KHAEGAVLVEFGDTKVICTASVEESVPPFLRGKGTGWVTAEYSMLPRST-HTRSSREAAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL- 138
            +       I R+I RS+R +       E    +  +V+Q D        S+  A  AL 
Sbjct: 81  GKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVIQADGG--TRTASITGAYVALV 138

Query: 139 ----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                     +L  LP +  V    V  ++G  +L+    ED   +  ++  ++ +   V
Sbjct: 139 DALHLLVERGVLPLLPIKEAVAAVSVGIVDGNILLDLNYVEDSAAEVDMNFVMTSSDRFV 198

Query: 186 -LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +    E+   + + +    +      + +    ++ 
Sbjct: 199 EVQGTAESEPFTVEQMDGMRVAAVEGIRKLFSIQNEA 235


>gi|254487308|ref|ZP_05100513.1| ribonuclease PH [Roseobacter sp. GAI101]
 gi|214044177|gb|EEB84815.1| ribonuclease PH [Roseobacter sp. GAI101]
          Length = 237

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S      +   GS+L   G T  +   T+    +++    + G+  
Sbjct: 1   MRPSGRKLDEMRAVSVDTDFTKHAEGSALIKMGGTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P++ PVA I+ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWIALKLAVNKLMKAGDVVNDPLADPVAAISCGIYAGQS----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T +G +  +QM  +    S + M   +  A++G   ++   
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTGTGRLIEIQMSAEGSTYSRDQMNQLMDLAEKGVSELVEIQ 232

Query: 536 SKVLS 540
             V  
Sbjct: 233 KAVTK 237



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 76/222 (34%), Gaps = 29/222 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+ L   G T VL T   +  +     G     +T  Y     A        +RRE
Sbjct: 22  KHAEGSALIKMGGTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRATN----TRMRRE 77

Query: 82  ---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASA 136
               +     + I R+I R++R    +    E Q+    +V+Q D        S+     
Sbjct: 78  AAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQADGG--TRCASITGGWI 135

Query: 137 ALMLS-----------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQ 182
           AL L+             P   PV         GQ VL+   P   E     +  ++GT 
Sbjct: 136 ALKLAVNKLMKAGDVVNDPLADPVAAISCGIYAGQSVLDLDYPEDSEAGVDGNFIMTGTG 195

Query: 183 DAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             + + +  E +  S D +   +         ++E    + K
Sbjct: 196 RLIEIQMSAEGSTYSRDQMNQLMDLAEKGVSELVEIQKAVTK 237


>gi|114705078|ref|ZP_01437986.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
 gi|114539863|gb|EAU42983.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
          Length = 240

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 25/248 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++++R++S   G+ +   GS L   G+TQ +   +L    +E+    L  + +
Sbjct: 1   MRPSKRPADSMREVSLTTGVNRHAEGSCLVKFGETQVLCTASL----EERIPPWLKNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+  R     G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATGDRMRREASAGKQGGRTVEIQRLIGRSLRAVVDMGALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G  +AL +                +   VA ++ G+ K+      
Sbjct: 117 DVIQADGGTRTASITGGYVALAECLKWMEARSMCQRKNVLKGHVAAVSCGIYKNEP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED +   D     T   GI  +Q   +    SE      +  AK+G   ++  
Sbjct: 173 VLDLDYAEDSVAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTKLMALAKKGIGELVEA 232

Query: 535 MSKVLSES 542
            +  L +S
Sbjct: 233 QTAALGDS 240



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 35/231 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + L TG + R ++G+ L  +GET VL T   +  +           +T  Y     A 
Sbjct: 12  REVSLTTG-VNRHAEGSCLVKFGETQVLCTASLEERIPPWLKNSGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    +     + I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  GD----RMRREASAGKQGGRTVEIQRLIGRSLRAVVDMGALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLSGLPF-------------EGPVVGAQVDYINGQYVLNPRLDED-- 170
               S+     AL    L +             +G V          + VL+    ED  
Sbjct: 125 TRTASITGGYVALA-ECLKWMEARSMCQRKNVLKGHVAAVSCGIYKNEPVLDLDYAEDSV 183

Query: 171 -QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
            +   +  ++G    ++ ++   E    SE+     +         ++EA 
Sbjct: 184 AETDANFVMTG-AGGIVEIQGTAEGTPFSEEEFTKLMALAKKGIGELVEAQ 233


>gi|306836769|ref|ZP_07469730.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567356|gb|EFM42960.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 242

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + +  R DGR  + +R +           GS L   G+T+ +   ++    +        
Sbjct: 1   MTEFTRADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV----ELGVPRFKR 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT +        G    R     RL  R++   +        T+
Sbjct: 57  DSGEGWLTAEYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
           ++  ++ ++DG +  A++ G+ +AL DA           G P+  P+A +++G++    D
Sbjct: 117 QLDCDVLQADGGTRTASITGAYVALADAIAHLKAEGVVPGEPLLDPIAAVSVGII----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             I  D+  +ED    +D  V   +SG    +Q   + G      +   L  A++G   +
Sbjct: 173 GEICLDLPYEEDSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSEL 232

Query: 532 LNEMSKV 538
           +      
Sbjct: 233 IAAQKAA 239



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL  +G T V+ T  V     +  +D     LT  Y     A   ++P   +R   + 
Sbjct: 30  GSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTAEYAMLPSATHDRMPRESMR--GKV 87

Query: 85  TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR++ RS+R      +  +N  Q+  +V+Q D        S+  A  AL  + 
Sbjct: 88  KGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQADGG--TRTASITGAYVALADAI 145

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                     G P   P+    V  I+G+  L+   +ED   +  L++ +  + D V  +
Sbjct: 146 AHLKAEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEEDSRAEVDLNVVMQESGDFV-EI 204

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +          + +   +      C  +I A  
Sbjct: 205 QGTGEHGLFGREQLNGMLDVAQKGCSELIAAQK 237


>gi|172041146|ref|YP_001800860.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
 gi|171852450|emb|CAQ05426.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
          Length = 257

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 24/249 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
                R DGR  + +RDI           GS L   G+T+ +   ++    +        
Sbjct: 7   QSTHTRADGRSVDQLRDIRITRRFTTNPAGSVLVEFGNTRVMCTASV----ELGVPRFKR 62

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT E        G    R     RL  RA+   +  T     T+
Sbjct: 63  DSGEGWLTAEYAMLPSATHERMPRESMRGKVKGRTHEISRLVGRALRAAVDLTELGENTI 122

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
            I  ++ ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D
Sbjct: 123 AIDCDVLQADGGTRTAAITGAYVALADALAYLQEQGVVPGKPLRAPVAAVSVGII----D 178

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            +   D+  +ED    +D  V  T +G    +Q   +        +   L  A+ G   +
Sbjct: 179 GVACLDLPYEEDSRADVDMNVVMTKAGRFVEIQGTGEAAEFDRAELNTMLDLAEGGLHQL 238

Query: 532 LNEMSKVLS 540
           +    + L+
Sbjct: 239 IELQERALN 247



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R +++ T R      G+VL  +G T V+ T  V     +  +D     LT  Y     A 
Sbjct: 22  RDIRI-TRRFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTAEYAMLPSAT 80

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             ++P   +R   +       ISR++ R++R     ++  +N   +  +V+Q D      
Sbjct: 81  HERMPRESMR--GKVKGRTHEISRLVGRALRAAVDLTELGENTIAIDCDVLQADGG--TR 136

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
             ++  A  AL  +           G P   PV    V  I+G   L+ P  ++ +  +D
Sbjct: 137 TAAITGAYVALADALAYLQEQGVVPGKPLRAPVAAVSVGIIDGVACLDLPYEEDSRADVD 196

Query: 176 LFVSGTQ-DAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + V  T+    + ++   EA +     +   +         +IE   + 
Sbjct: 197 MNVVMTKAGRFVEIQGTGEAAEFDRAELNTMLDLAEGGLHQLIELQERA 245


>gi|145628603|ref|ZP_01784403.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
 gi|144979073|gb|EDJ88759.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
          Length = 238

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++   R I       +   GS L   GDT+ +   T+   ED      L G  +
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATV---EDA-VPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G    R +   RL  R++  ++   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+++AL D              PI   V+ I++G+V    +   +
Sbjct: 117 DVIQADGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIV----EGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q        S   ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAGSEPFSHEELLTLLDLAKQGCNQIFIAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T VL T   + ++     GQ    +T  Y     + 
Sbjct: 12  RQIKI-TRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                  ++RE    +     + I R+I RS+R +       E    +  +V+Q D    
Sbjct: 71  ----HSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
               S+  A+ AL   ++GL         P +G V    V  + GQ V +    ++    
Sbjct: 125 TRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYVEDSAAE 184

Query: 174 LDLFVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAISKL 221
            D+ V   +D  + +E++    SE    + +L  +      C  +  A  + 
Sbjct: 185 TDMNVVMMEDGRM-IEVQGTAGSEPFSHEELLTLLDLAKQGCNQIFIAQREA 235


>gi|311106536|ref|YP_003979389.1| ribonuclease PH [Achromobacter xylosoxidans A8]
 gi|310761225|gb|ADP16674.1| ribonuclease PH [Achromobacter xylosoxidans A8]
          Length = 244

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R  S + G  +   GS L   G+T  +   ++     E+    L G    
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASV----LEKVPPFLKGKGEG 64

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G  S R     RL  R++  V    A    TL +  +
Sbjct: 65  WVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCD 124

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       LM  G     PI   VA +++GLV+       + 
Sbjct: 125 VLQADGGTRCASITGAWVAASEAIALLMKRGDLAVNPIRDAVAAVSVGLVQ----GRAVL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED     D  V  T  G    +Q   +    +   +   L  A+ G   ++ E  
Sbjct: 181 DLDYEEDSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDTMLVLAEGGIAGLVREQR 240

Query: 537 KV 538
             
Sbjct: 241 AA 242



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 77/200 (38%), Gaps = 20/200 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP  LE G   R ++G+VL   G T VL T      +     G+    +T  Y     A 
Sbjct: 19  RPFSLERG-FTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTAEYGMLPRAT 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDL--ESSP 126
               G       + +     I R+I RS+R +F      E    +  +V+Q D     + 
Sbjct: 78  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQADGGTRCAS 136

Query: 127 HVVSMVAASAALML----SGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
              + VAAS A+ L      L   P    V    V  + G+ VL+   +ED      +++
Sbjct: 137 ITGAWVAASEAIALLMKRGDLAVNPIRDAVAAVSVGLVQGRAVLDLDYEEDSACDADVNV 196

Query: 177 FVSGTQDAVLMVELEANQLS 196
            ++G   A + V+      +
Sbjct: 197 IMTG-GGAFVEVQGTGEGAT 215


>gi|328882703|emb|CCA55942.1| Ribonuclease PH [Streptomyces venezuelae ATCC 10712]
          Length = 243

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTGEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V  +++G+V    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIV----DGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLASGGCAELAEI 234

Query: 535 MSKV 538
             K 
Sbjct: 235 QRKA 238



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     A 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTGEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P  G V    V  ++G  +L+   +ED +   
Sbjct: 129 AAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIVDGVPLLDLCYEEDVRADT 188

Query: 175 DLFVSGTQDA-VLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
           D+ V  T D   + V+  A         +   +      C  + E   K  +
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLASGGCAELAEIQRKALE 240


>gi|78065577|ref|YP_368346.1| ribonuclease PH [Burkholderia sp. 383]
 gi|123569063|sp|Q39IL4|RNPH_BURS3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77966322|gb|ABB07702.1| RNAse PH [Burkholderia sp. 383]
          Length = 243

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ +   ++     E+  D L    + 
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVLCTASV----SERVPDFLRDRGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D              PI+  VA I++G+     +   + 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKITRSPITDHVAAISVGVY----EGAPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSQCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T VL T  V +R     +D     LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVLCTASVSERVPDFLRDRGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S  +    +   P    V    V    G  VL+    ED      +++ ++G     +
Sbjct: 145 AVSKLIAAGKITRSPITDHVAAISVGVYEGAPVLDLDYAEDSQCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +         +++   
Sbjct: 204 EVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQK 238


>gi|319778262|ref|YP_004129175.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
 gi|317108286|gb|ADU91032.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
          Length = 251

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 24/254 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K R DGR +  +R++S          GS L   G T  +   ++  +        L G  
Sbjct: 6   KNRSDGRSNNQIRNVSITRNYTPYAEGSVLIKVGQTHVLCNASVLPK----VPPFLKGQG 61

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT +        G  + R     RL  R++   +   A    ++ I 
Sbjct: 62  TGWVTAEYGMLPRATHDRMDREASKGKQTGRTQEIQRLIGRSLRACIDLAALGEISIHID 121

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +AL D              PI + +  I++G+V DG    +
Sbjct: 122 CDVIQADGGTRCASITGAWVALYDAINKCIERGLIQSNPIHQQIVAISVGVVGDG----L 177

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+   ED     D  V  T +     +Q   +    S + +   L  A+ G   +L  
Sbjct: 178 LLDLDYSEDSNCESDINVVMTSNKTFVEIQGTAEGETFSRDSLNQLLDLAQFGCDQLLRV 237

Query: 535 MSKVLSESRLQLGE 548
             + L  S L L  
Sbjct: 238 QLESLGISNLNLKT 251



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 23/214 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G+T VL    V  +      GQ    +T  Y     A          +  +
Sbjct: 30  AEGSVLIKVGQTHVLCNASVLPKVPPFLKGQGTGWVTAEYGMLPRATHDRMDREASK-GK 88

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM-- 139
            T     I R+I RS+R         E    +  +V+Q D        S+  A  AL   
Sbjct: 89  QTGRTQEIQRLIGRSLRACIDLAALGEISIHIDCDVIQADGG--TRCASITGAWVALYDA 146

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                    +   P    +V   V  +    +L+    ED   +  +++ ++  +  V +
Sbjct: 147 INKCIERGLIQSNPIHQQIVAISVGVVGDGLLLDLDYSEDSNCESDINVVMTSNKTFVEI 206

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
               E    S D +   +      C  ++    +
Sbjct: 207 QGTAEGETFSRDSLNQLLDLAQFGCDQLLRVQLE 240


>gi|227548661|ref|ZP_03978710.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079275|gb|EEI17238.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
          Length = 246

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +  R+DGR  + +R +    G      GS L   G T+ +   ++    +         +
Sbjct: 7   EFTRLDGRAFDEMRPVRITRGFTTNPAGSVLVEFGATRVMCTASV----EVGVPRFKKDS 62

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y  LP AT E        G    R     RL  R++   +        T+++
Sbjct: 63  GEGWLTAEYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLAQLGENTIQL 122

Query: 426 VSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL DA           G P+  PVA ++ GLV    D  
Sbjct: 123 DCDVLQADGGTRTASITGAYVALADAIAFLSERGLVPGEPLLAPVAAVSAGLV----DGH 178

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +ED    +D  V   DSG    +Q   + G      +   L  A++G   ++ 
Sbjct: 179 VALDLPYEEDSRAEVDLNVVMNDSGNFVEIQGTGEHGLFGRAELDAMLTVAEKGCRELIE 238

Query: 534 EMSKV 538
                
Sbjct: 239 AQKAA 243



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 28/228 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+++  G       G+VL  +G T V+ T    V     K       LT  Y     A 
Sbjct: 20  RPVRITRG-FTTNPAGSVLVEFGATRVMCTASVEVGVPRFKKDSGEGWLTAEYAMLPSAT 78

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             ++P   ++   +       ISR++ RS+R     ++  +N  Q+  +V+Q D      
Sbjct: 79  HERMPRESMK--GKVKGRTHEISRLVGRSLRAAVDLAQLGENTIQLDCDVLQADGG--TR 134

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL  +           G P   PV       ++G   L+   +ED   +  
Sbjct: 135 TASITGAYVALADAIAFLSERGLVPGEPLLAPVAAVSAGLVDGHVALDLPYEEDSRAEVD 194

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           L++ ++ + + V  ++            +   +      C+ +IEA  
Sbjct: 195 LNVVMNDSGNFV-EIQGTGEHGLFGRAELDAMLTVAEKGCRELIEAQK 241


>gi|157693251|ref|YP_001487713.1| ribonuclease PH [Bacillus pumilus SAFR-032]
 gi|166991082|sp|A8FFY6|RNPH_BACP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157682009|gb|ABV63153.1| tRNA nucleotidyltransferase [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 104/246 (42%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R I  + G +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASI----EDRVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+                PI+  +A I++G+        +L
Sbjct: 117 DVIQADGGTRTASITGAFVAMTLAIQKLRAEGAIKQNPITDYLAAISVGIDSQQG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T +G    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQ 233

Query: 536 SKVLSE 541
             V  E
Sbjct: 234 KAVTGE 239



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 29/237 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++E G I    +G+VL + G T V+     +  +     G+    +T  Y     A 
Sbjct: 12  RKIEIEAGYITH-PEGSVLISAGNTKVICNASIEDRVPPFLRGEGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       +  + T   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  AQRTIRESSK-GKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQG--- 172
            S+  A  A+ L+             P    +    V  I+ Q   +L+   +ED     
Sbjct: 128 ASITGAFVAMTLAIQKLRAEGAIKQNPITDYLAAISVG-IDSQQGLLLDLNYEEDSSAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            +++ ++G     + ++    + +   + +   +       K +IE    +     +
Sbjct: 187 DMNVIMTG-AGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTGEVIE 242


>gi|332981492|ref|YP_004462933.1| ribonuclease PH [Mahella australiensis 50-1 BON]
 gi|332699170|gb|AEE96111.1| ribonuclease PH [Mahella australiensis 50-1 BON]
          Length = 247

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++     L+   GS L   G+T+ I    +    +++    L GT +
Sbjct: 1   MRAYHRGFDQLRPVTLTRDYLKHPDGSVLIEAGETKIICTAMI----EDKVPPFLKGTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +       R     R+  R +  V+  +A    T+ I  
Sbjct: 57  GWITSEYGMLPGSTQARKIRESTRGHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL                PIS  VA +++G+V    D  I+
Sbjct: 117 DVIQADGGTRTASITGSFVALAIAINKLFEKKKIERFPISNLVAAVSVGIV----DGQIM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED    +D  +A TD G    +Q   +    S   M   +  A +G   ++   
Sbjct: 173 LDLCYDEDARAQVDMNIAMTDDGRFVEVQGTGEAAPFSRRQMDELINLADKGIQELMALQ 232

Query: 536 SKVLSESRLQL 546
              L E   ++
Sbjct: 233 IDCLGEIADKI 243



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 40/243 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ L T    +  DG+VL   GET ++ T + +  +     G     +T  Y       
Sbjct: 12  RPVTL-TRDYLKHPDGSVLIEAGETKIICTAMIEDKVPPFLKGTGKGWITSEY------- 63

Query: 71  GKIPGGYLRRESRPTE------NEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDL 122
           G +PG    R+ R +           I R+I R++R +       E    +  +V+Q D 
Sbjct: 64  GMLPGSTQARKIRESTRGHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDCDVIQADG 123

Query: 123 ESSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED- 170
                  S+  +  AL ++             P    V    V  ++GQ +L+   DED 
Sbjct: 124 G--TRTASITGSFVALAIAINKLFEKKKIERFPISNLVAAVSVGIVDGQIMLDLCYDEDA 181

Query: 171 QGSLDLFVSGTQDA---VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS----KLAK 223
           +  +D+ ++ T D     +    EA   S   + + I       + ++        ++A 
Sbjct: 182 RAQVDMNIAMTDDGRFVEVQGTGEAAPFSRRQMDELINLADKGIQELMALQIDCLGEIAD 241

Query: 224 MCA 226
              
Sbjct: 242 KIG 244


>gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
 gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
          Length = 260

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 25/251 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R ++   G  Q   GS L   G+T+ +   ++    +        G+ 
Sbjct: 2   SRRADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASV----ELGVPGWRRGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT E SR     G    R     RL  R++   +   A    T+ I 
Sbjct: 58  QGWLTAEYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A++ G+ +AL DA              PIS  +A +++G+V    D  
Sbjct: 118 CDVLQADGGTRTASITGAYVALCDAVTYLGAAGKLTDPQPISCAIAAVSVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +ED    +D  V  TD+G +  +Q   +    +   +   L  A  G   +  
Sbjct: 174 VRLDLPYEEDSRAEVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTEKLFA 233

Query: 534 EMSKVLSESRL 544
              + L+    
Sbjct: 234 VQKQALAAPYP 244



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 39/250 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAV 70
           RP+ +  G   +   G+VL  +G T VL T   +      + G     LT  Y     A 
Sbjct: 14  RPVTITRG-FTQNPAGSVLVEFGNTKVLCTASVELGVPGWRRGSGQGWLTAEYAMLPGAT 72

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESS 125
            +      RRE    +       ISR+I RS+R          N   +  +V+Q D    
Sbjct: 73  HERS----RRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG-- 126

Query: 126 PHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG 172
               S+  A  AL  +              P    +    V  ++G+  L+ P  ++ + 
Sbjct: 127 TRTASITGAYVALCDAVTYLGAAGKLTDPQPISCAIAAVSVGVVDGRVRLDLPYEEDSRA 186

Query: 173 SLDLFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            +D+ V  T    L+      +       + D +LD+ + G      +     +   + A
Sbjct: 187 EVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTE---KLFAVQKQ--ALAA 241

Query: 227 KEPIVIDSKD 236
             P V+   +
Sbjct: 242 PYPGVLPETE 251


>gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8]
 gi|166228289|sp|A1TY30|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8]
          Length = 238

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RD+       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASV----ENKVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G    R +   RL  R++   +   A   +T+ I  
Sbjct: 57  GWITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL+D              P+ + VA +++G+         +
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNHLVKEKRLKKSPLKQMVAAVSVGVY----RGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  V  TD  G   +Q   +     +  +   L  A++    +    
Sbjct: 173 ADLDYPEDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQAELDAMLALARKAIDQLFELQ 232

Query: 536 SKVLSE 541
            + LS 
Sbjct: 233 KEALSA 238



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    R ++G+VL  +G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 12  RDVRI-TRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G   G    R  +     + I R+I RS+R         ++   +  +V+Q D       
Sbjct: 71  GSRMGREAAR-GKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++     AL   L+ L         P +  V    V    G  V +   P   E +  +
Sbjct: 128 AAITGGCVALVDALNHLVKEKRLKKSPLKQMVAAVSVGVYRGTPVADLDYPEDSEAETDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS-EDVVLDA-IIFGHNECKPVIEAISKL 221
           ++ ++  Q   + ++  A     E   LDA +         + E   + 
Sbjct: 188 NVIMT-DQGGFIEIQGTAEGAPFEQAELDAMLALARKAIDQLFELQKEA 235


>gi|311693191|gb|ADP96064.1| ribonuclease PH [marine bacterium HP15]
          Length = 238

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RD+       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASV----ENKVPPFLRGEGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G    R +   RL  R++   +  TA   +++ I  
Sbjct: 57  GWITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL+D              P+ + VA +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNHLVADKRLKKSPLKQMVAALSVGVYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  TD  G   +Q   +     ++ +   L  AK+G   +    
Sbjct: 173 VDLDYPEDSEAETDMNVIMTDQGGFIEIQGTAEGAPFDQSELDSMLTLAKQGIEQLFEIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    R ++G+VL  +G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 12  RDVRI-TRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
           G   G    R  +     + I R+I RS+R         E    +  +V+Q D       
Sbjct: 71  GSRMGREAAR-GKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++     AL   L+ L         P +  V    V    G  V++   P   E +  +
Sbjct: 128 AAITGGCVALVDALNHLVADKRLKKSPLKQMVAALSVGVYKGTPVVDLDYPEDSEAETDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++  Q   + ++  A      +  +   +       + + E      + 
Sbjct: 188 NVIMT-DQGGFIEIQGTAEGAPFDQSELDSMLTLAKQGIEQLFEIQKAALEA 238


>gi|499181|emb|CAA25357.1| unnamed protein product [Escherichia coli]
          Length = 238

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++D  +  A++ G+ +AL+D              P+   VA +++G+V        +
Sbjct: 117 DVLQADAWTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   +++ L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADA--WTRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL+           L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 128 ASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 188 NVVMTEDGRIIEVQGTAE 205


>gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
 gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
          Length = 236

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 23/231 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +R ++ + G+ +   GS L   GDT  +   ++    +++    L  T  
Sbjct: 1   MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTASI----EDRPPPFLRNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PV+ ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLMQAGDVTSDPLGDPVSAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            D+   ED +  +D     T   +  +QM  +    S + +   L  A+RG
Sbjct: 173 LDLDYPEDSVAGVDGNFVMTGGRMIEVQMSAEGATFSRDELEQLLGLAERG 223



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 78/228 (34%), Gaps = 31/228 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           RP+ +ETG + + ++G+ L   G+T VL T   +           L   T  Y     + 
Sbjct: 12  RPVTIETG-VTKHAEGSCLIKMGDTHVLCTASIEDRPPPFLRNTGLGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  G----SRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-- 171
               S+     AL L            S  P   PV         GQ VL+    ED   
Sbjct: 125 TRCASITGGWVALRLAVNKLMQAGDVTSD-PLGDPVSAVSCGIYAGQPVLDLDYPEDSVA 183

Query: 172 -GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
               +  ++G +   + +  E    S D +   +         +    
Sbjct: 184 GVDGNFVMTGGRMIEVQMSAEGATFSRDELEQLLGLAERGVGELAALQ 231


>gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
 gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
          Length = 242

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 24/240 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL                PI + VA I++G+V      + L D+  
Sbjct: 125 DGGTRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISVGIV----GGVPLLDLDY 180

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  +  T SG I  +Q   +    S   +   +  A++G   ++      LS
Sbjct: 181 PEDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRYQQNALS 240



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL ++       G+    P    V    V  + G  +L+    ED    
Sbjct: 128 TRTASITGAFVALHIAVGKLISDGILTENPIREAVAAISVGIVGGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S + +   I       + ++    
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRYQQ 236


>gi|126438556|ref|YP_001059966.1| ribonuclease PH [Burkholderia pseudomallei 668]
 gi|167903809|ref|ZP_02491014.1| ribonuclease PH [Burkholderia pseudomallei NCTC 13177]
 gi|166228273|sp|A3NC95|RNPH_BURP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126218049|gb|ABN81555.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 668]
          Length = 243

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RERGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGMF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  V  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 173 GGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRLQRAA 240



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++GAVL  +G+T V+ T      + +    +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+   DED      
Sbjct: 132 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGMFGGTPVLDLDYDEDSACDTD 191

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G    V +    E    S   +   +         ++       + 
Sbjct: 192 MNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALEA 243


>gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043]
 gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043]
          Length = 245

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M    +R  GR  +  R+I+ + G  +   GS L   GDT+ +   ++    +      L
Sbjct: 1   MQRGGMRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASV----EAGVPRWL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G Q+      Y  LP AT          G    R +   RL  R++  V+       +T
Sbjct: 57  RGKQQGWITAEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A++ G  +AL+D              P  + V+ +++G+ K   
Sbjct: 117 ITVDCDVIQADGGTRTASITGGCVALVDAIHHLQREKLIKKDPFKQLVSSVSVGIFKGQP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+   ED     D  V   +  G+  +Q   +    +   +   L  A+     
Sbjct: 177 ----VVDLDYPEDSTAGTDMNVVMAEDGGLIEVQGTAETATFTRQELNAMLDLAEGAGRQ 232

Query: 531 ILNEMSKV 538
           +     + 
Sbjct: 233 LFAHQREA 240



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + LE G   R ++G+VL ++G+T VL     +  +     G+    +T  Y     A 
Sbjct: 17  REITLERG-YTRHAEGSVLVSFGDTKVLCNASVEAGVPRWLRGKQQGWITAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
               GG      +     + I R+I RS+R +    K  +    V  +V+Q D       
Sbjct: 76  -HTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITVDCDVIQADGG--TRT 132

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSL 174
            S+     AL   +  L         PF+  V    V    GQ V++    ED      +
Sbjct: 133 ASITGGCVALVDAIHHLQREKLIKKDPFKQLVSSVSVGIFKGQPVVDLDYPEDSTAGTDM 192

Query: 175 DLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++     ++ V+  A     +   +   +       + +     + 
Sbjct: 193 NVVMA-EDGGLIEVQGTAETATFTRQELNAMLDLAEGAGRQLFAHQREA 240


>gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
 gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
          Length = 248

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 112/247 (45%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR++  +R I+ + G+ +   GS L   GDT+ +V  T+    +++    + G  +
Sbjct: 1   MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATV----EDRVPPFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G    R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWVTAEYSMLPRATQSRNQREAARGKLGGRTMEIQRLIGRALRSVVDLQALGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G+ +AL                PI+  +A +++G+V    +   +
Sbjct: 117 DVIQADGGTRTTSITGAFIALAIAVDKLAEKASFKSYPITDYLASVSVGVV----NGSPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ DED    +D  V  T +G    +Q   +    S + +   L  A+ G   ++ + 
Sbjct: 173 LDLNYDEDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGKQ 232

Query: 536 SKVLSES 542
            +VL ++
Sbjct: 233 REVLGQA 239



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG + + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RSITIETG-VNKYAEGSVLIAFGDTKVLVTATVEDRVPPFMKGQGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +          +     + I R+I R++R +       E  +    +V+Q D       
Sbjct: 71  -QSRNQREAARGKLGGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL ++             P    +    V  +NG  VL+   DED   +  +
Sbjct: 128 TSITGAFIALAIAVDKLAEKASFKSYPITDYLASVSVGVVNGSPVLDLNYDEDSKAKVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++ ++G    V  V+    +   S   +   +         +I    ++     
Sbjct: 188 NVVMTGAGQFV-EVQGTGEESPFSRSELDALLGLAETGITELIGKQREVLGQAG 240


>gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 248

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +  +R++    G L    GS L   G T+ +   +L     E     + G  R
Sbjct: 1   MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLT----EGVPRWMKGEGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  VL  +     TL++  
Sbjct: 57  GWATAEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL+D          +P     +   VA I++G+V    D  
Sbjct: 117 DVLQADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIV----DGT 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+  +ED     D  V  T SG    +Q   +        +   L  A+ G   +  
Sbjct: 173 PVLDLPYEEDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELAR 232

Query: 534 EMSKVLSE 541
             +  L++
Sbjct: 233 IQASALAQ 240



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 30/203 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV----YDRSLK-DGQDFFPLTVNYQERTY 68
           R +K+  G +   ++G+VL  +G T VL          R +K +G+ +   T  Y     
Sbjct: 12  REVKITRGWL-DHAEGSVLVEFGRTRVLCAASLTEGVPRWMKGEGRGWA--TAEYAMLPR 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSP 126
           A           + +       ISR+I RS+R +    K  +N  QV  +V+Q D     
Sbjct: 69  AT-HTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDCDVLQADGG--T 125

Query: 127 HVVSMVAASAALM--------LSGLP-----FEGPVVGAQVDYINGQYVLNPRLDED--- 170
              ++  A  AL+        L  +P      +  V    V  ++G  VL+   +ED   
Sbjct: 126 RTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVLDLPYEEDSTA 185

Query: 171 QGSLDLFVSGTQDAVLMVELEAN 193
           +  +++ ++G+  A + V+  A 
Sbjct: 186 ETDMNVVMTGS-GAFVEVQGTAE 207


>gi|317403008|gb|EFV83546.1| ribonuclease PH [Achromobacter xylosoxidans C54]
          Length = 244

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R  S + G  +   GS L   G+T  +   ++     E+    L G    
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASV----LEKVPPFLKGKGEG 64

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G  S R     RL  R++  V    A    TL +  +
Sbjct: 65  WVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCD 124

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       LM  G     PI   VA +++GLV+       + 
Sbjct: 125 VLQADGGTRCASITGAWVAASDAVALLMQRGDLAVNPIRDAVAAVSVGLVQ----GRPVL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED     D  V  T  G    +Q   +    +   +   L  A+ G   ++    
Sbjct: 181 DLDYEEDSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDAMLGLAENGIAGLVRAQR 240

Query: 537 KV 538
             
Sbjct: 241 AA 242



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 22/224 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP  LE G   R ++G+VL   G T VL T      +     G+    +T  Y     A 
Sbjct: 19  RPFSLERG-FTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTAEYGMLPRAT 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDL--ESSP 126
               G       + +     I R+I RS+R +F      E    +  +V+Q D     + 
Sbjct: 78  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQADGGTRCAS 136

Query: 127 HVVSMVAASAALML----SGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
              + VAAS A+ L      L   P    V    V  + G+ VL+   +ED      +++
Sbjct: 137 ITGAWVAASDAVALLMQRGDLAVNPIRDAVAAVSVGLVQGRPVLDLDYEEDSACDADVNV 196

Query: 177 FVSGTQDAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            ++G   A + V+   E    +   +   +    N    ++ A 
Sbjct: 197 IMTG-GGAFVEVQGTGEGATFTRAELDAMLGLAENGIAGLVRAQ 239


>gi|194017374|ref|ZP_03055986.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
 gi|194011242|gb|EDW20812.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+D R  + +R I  + G +    GS L   G+T+ I   ++    +++    L G  +
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASI----EDRVPPFLRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L   GV    PI+  +A I++G+        +L
Sbjct: 117 DVIQADGGTRTASITGAFVAMTLAIQKLRAEGVIKQNPITDYLAAISVGIDSQQG---LL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T +G    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 174 LDLNYEEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQ 233

Query: 536 SKVLSE 541
             V  E
Sbjct: 234 KAVTGE 239



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 29/237 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++E G I    +G+VL + G T V+     +  +     GQ    +T  Y     A 
Sbjct: 12  RKIEIEAGYITH-PEGSVLISAGNTKVICNASIEDRVPPFLRGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +    K  +    +  +V+Q D       
Sbjct: 71  AQ-RTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQG--- 172
            S+  A  A+ L+             P    +    V  I+ Q   +L+   +ED     
Sbjct: 128 ASITGAFVAMTLAIQKLRAEGVIKQNPITDYLAAISVG-IDSQQGLLLDLNYEEDSSAEV 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            +++ ++G     + ++    + +   + +   +       K +IE    +     +
Sbjct: 187 DMNVIMTG-AGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTGEVIE 242


>gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2]
          Length = 254

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + +G    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|306819763|ref|ZP_07453420.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304552198|gb|EFM40132.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 459

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 136/375 (36%), Gaps = 49/375 (13%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R I           GS L   G+T+ I   ++    +E+    L  +       
Sbjct: 15  RANNEMRRIRITKNYAGYADGSVLIEFGNTKVICTASV----EEKVPPFLKNSGTGWISA 70

Query: 377 HYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ LP +T +        G    R     RL  R++   +  T     T+ I  ++ ++
Sbjct: 71  EYSMLPGSTKQRKVRDSTRGKIDGRSQEIQRLIGRSLRNAVDFTKLGERTIWIDCDVIQA 130

Query: 433 DGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +   ++ G+ +A+             +  PI   ++ I++G+V+  +    + D+  
Sbjct: 131 DGGTRTTSINGAFIAMALAVKKLYDRKIISHFPIDSFISAISVGIVRGEN----VLDLCY 186

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           ++D    +D  +  T  G    +Q   +    S + +   L  A++    I+N   ++L 
Sbjct: 187 EQDSNAQVDMNIVMTSKGEFVEIQGTGEQTPFSRDSLNDLLTLAEKANEKIVNLQKEILG 246

Query: 541 ESRLQL--GEFTPRVEIMAI------PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           +    L  GE  P+VE + I        D+I  ++   G   + + +     V++++ GT
Sbjct: 247 DEITYLITGEKEPKVEEVLIATTNEHKLDEIGKILTKYGTKYKSLSDFNLQDVDVEETGT 306

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL--VHIS 650
                     +  ARE  +               VV   D G  V       G+     S
Sbjct: 307 TFE----ENALIKAREYCK-----------LTNTVVLSDDSGLMVDALKGAPGVYSKRFS 351

Query: 651 QLSTERVAKTSDVVK 665
                 +     ++K
Sbjct: 352 NEEPRDIKNNEKLLK 366



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 134/380 (35%), Gaps = 40/380 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T   A  +DG+VL  +G T V+ T   +  +           ++  Y     + 
Sbjct: 21  RRIRI-TKNYAGYADGSVLIEFGNTKVICTASVEEKVPPFLKNSGTGWISAEYSMLPGST 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       R  +       I R+I RS+R    F+K  +    +  +V+Q D       
Sbjct: 80  KQRKVRDSTR-GKIDGRSQEIQRLIGRSLRNAVDFTKLGERTIWIDCDVIQADGG--TRT 136

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A+            +S  P +  +    V  + G+ VL+   ++D   Q  +
Sbjct: 137 TSINGAFIAMALAVKKLYDRKIISHFPIDSFISAISVGIVRGENVLDLCYEQDSNAQVDM 196

Query: 175 DLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMC------- 225
           ++ ++ ++   + ++    Q   S D + D +       + ++    ++           
Sbjct: 197 NIVMT-SKGEFVEIQGTGEQTPFSRDSLNDLLTLAEKANEKIVNLQKEILGDEITYLITG 255

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
            KEP V +    +  E ++ ++ K  +        K +    + D+  +       E++ 
Sbjct: 256 EKEPKVEEVLIATTNEHKLDEIGK--ILTKYGTKYKSLSDFNLQDVDVEETGTTFEENAL 313

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGR-----DSETVRDISAQVGLLQRTHGSSL 340
               E   +   +       +M+D      G       +E  RDI     LL+   G + 
Sbjct: 314 IKAREYCKLTNTVVLSDDSGLMVDALKGAPGVYSKRFSNEEPRDIKNNEKLLKSLMGLTS 373

Query: 341 FIRGDTQAIVVVTLGTREDE 360
             RG     VV  +    +E
Sbjct: 374 DERGAKFVSVVALVFPNGEE 393


>gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
 gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
          Length = 254

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + +G    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|317050112|ref|YP_004117760.1| ribonuclease PH [Pantoea sp. At-9b]
 gi|316951729|gb|ADU71204.1| ribonuclease PH [Pantoea sp. At-9b]
          Length = 238

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   G+T+ +   T+    DE     L G  +
Sbjct: 1   MRPAGRHTNQVRPVTLTRHYTKHAEGSVLVEFGETKVLCTATV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +   A   YT+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLQALGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+V    +    
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVADGKLKSSPLKGMVAAISVGIV----EGEAR 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   ++   
Sbjct: 173 CDLEYVEDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLELLALARGGIEQLIVAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 KAALAD 238



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 26/200 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +GET VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRHYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             ++     +   +     + I R+I RS+R         E  +    +V+Q D      
Sbjct: 71  HSRMAREAAK--GKQGGRTLEIQRLIARSLRAAVDLQALGEYTITLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            L   P +G V    V  + G+   +    ED   +  
Sbjct: 127 TASITGACVALADALNKLVADGKLKSSPLKGMVAAISVGIVEGEARCDLEYVEDSAAETD 186

Query: 174 LDLFVSGTQDAVLMVELEAN 193
           +++ +      ++ V+  A 
Sbjct: 187 MNVVML-EDGRMIEVQGTAE 205


>gi|227542822|ref|ZP_03972871.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181448|gb|EEI62420.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 237

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 19/243 (7%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R DGR ++ +R++           GS L   G T+ +   ++     E      
Sbjct: 1   MSETFTRADGRATDELREVRITRNFTTNPAGSVLVEFGRTRVMCTASV----QEGVPRFK 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             +        Y  LP AT E +      G    R     RL  R++   +  T    YT
Sbjct: 57  KDSGEGWLTAEYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISK------PVAGIAMGLVKDGDDFIIL 476
           + +  ++ ++DG +  A++ G+ +AL DA   I K      PVA I++GL+    D    
Sbjct: 117 IALDCDVLQADGGTRTASITGAYVALADALASIDKTDALLPPVAAISVGLI----DGHPC 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +   ++G    +Q   + G  S   +   L   ++G   ++ + 
Sbjct: 173 LDLPYEEDSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KEA 235



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 18/210 (8%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+ T  V +   +  +D     LT  Y     A  +       +  +  
Sbjct: 31  GSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTAEYAMLPAATNERNPRESVK-GKVK 89

Query: 86  ENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                ISR++ RS+R      K  +    +  +V+Q D        S+  A  AL  +  
Sbjct: 90  GRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQADGG--TRTASITGAYVALADALA 147

Query: 144 PFEG------PVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVELEANQ-- 194
             +       PV    V  I+G   L+ P  ++ +  +D+ +   ++   +      +  
Sbjct: 148 SIDKTDALLPPVAAISVGLIDGHPCLDLPYEEDSRAEVDMNIIMKENGTFVEIQGTGEHG 207

Query: 195 -LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             S + +   +  G   C+ ++E   +   
Sbjct: 208 DFSREQLGTLLDLGEKGCRELVEKQKEALA 237


>gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
 gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
          Length = 238

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  E  RDI       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTASV----ENKVPPFLRGEGQ 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    G  +  G    R +   RL  R++   +   A   +T+ I  
Sbjct: 57  GWITAEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL+D              P+ + VA +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGGCVALVDALNFLVAQKRLKKSPLKQMVAAVSVGVFKGKP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED +   D  V  TD  G   +Q   +    ++  +   L  AK+G   +    
Sbjct: 173 VDLDYPEDSVAETDMNVVMTDKGGFIEIQGTAEGAPFAQEELDSMLVLAKQGIETLFALQ 232

Query: 536 SKVLS 540
           ++ L+
Sbjct: 233 NEALN 237



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    R ++G+VL  +G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 12  RDIRI-TRNYTRHAEGSVLIEFGDTKVICTASVENKVPPFLRGEGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
               G    R  +     + I R+I RS+R     K    +   +  +V+Q D       
Sbjct: 71  NSRMGREAAR-GKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++     AL+           L   P +  V    V    G+ V++    ED   +  +
Sbjct: 128 AAITGGCVALVDALNFLVAQKRLKKSPLKQMVAAVSVGVFKGKPVVDLDYPEDSVAETDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++  +   + ++  A      ++ +   ++      + +    ++ 
Sbjct: 188 NVVMT-DKGGFIEIQGTAEGAPFAQEELDSMLVLAKQGIETLFALQNEA 235


>gi|88861108|ref|ZP_01135742.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
           D2]
 gi|88816830|gb|EAR26651.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
           D2]
          Length = 237

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R ++          GS L   G+T+ +   T+    +      + G  +
Sbjct: 1   MRPSERTLNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATV----EAGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T       +  G  S R +   RL  R++   +   A    T+ I  
Sbjct: 57  GWITAEYGMLPRSTHTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   +A I++G+ K       +
Sbjct: 117 DVIQADGGTRTASISGACVALVDALTHMRAKGMINTNPLKYMIAAISVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  V  T++G +  +Q   +    S   +   L  AK     I++  
Sbjct: 173 TDLEYVEDSAAETDMNVIMTETGKLIEVQGTAEAEPFSFEELDQLLTLAKHSIREIIDIQ 232

Query: 536 SK 537
            +
Sbjct: 233 KQ 234



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+   T      ++G+VL  +G T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPVTF-TRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
                       + +   + I R+I RS+R     K    N   +  +V+Q D       
Sbjct: 71  -HTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL           M++  P +  +    V    G+ + +    ED   +  +
Sbjct: 128 ASISGACVALVDALTHMRAKGMINTNPLKYMIAAISVGIYKGEPITDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++ ++ T   + +    EA   S + +   +    +  + +I+   +
Sbjct: 188 NVIMTETGKLIEVQGTAEAEPFSFEELDQLLTLAKHSIREIIDIQKQ 234


>gi|219670395|ref|YP_002460830.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
 gi|219540655|gb|ACL22394.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
          Length = 247

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR++  +R +    G      GS L   G T+ I   T+    +E+      GT  
Sbjct: 2   KRFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATV----EEKVPLFKKGTGS 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  RA+  V+        T+ +  
Sbjct: 58  GWVTAEYSMLPRATQTRNPRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   +A +++G V    D + L
Sbjct: 118 DVIQADGGTRTASITGAYVALVDAVNHLLAKGLIKENPILDSLAAVSVGKV----DGMAL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T  G    +Q   +        +   L+ A++G   ++   
Sbjct: 174 LDLAYEEDSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQ 233

Query: 536 SKV 538
              
Sbjct: 234 KAA 236



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 26/223 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G+T V+ T   +  +   K G     +T  Y     A  +        + + T
Sbjct: 27  GSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTAEYSMLPRAT-QTRNPRESSKGKLT 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAAL----- 138
              + I R+I R++R +       E  +    +V+Q D        S+  A  AL     
Sbjct: 86  GRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQADGG--TRTASITGAYVALVDAVN 143

Query: 139 ------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                 ++   P    +    V  ++G  +L+   +ED   +  +++ ++G Q   + ++
Sbjct: 144 HLLAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEEDSKAEVDMNVVMTG-QGKFVEIQ 202

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
             A  +    + +   +       + ++    K A      P+
Sbjct: 203 GTAEDIPFGREELDQFLELAEKGIQELMGMQ-KAAAQVGTGPL 244


>gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
          Length = 280

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 42  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 97

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 98  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 157

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI+  V  I++G+V    D I + 
Sbjct: 158 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPITGSVQAISVGVV----DGIPML 213

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + +G    +Q   +    + N++   L  A  G   +    S
Sbjct: 214 DLAYEEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 273

Query: 537 KV 538
           + 
Sbjct: 274 EA 275



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 52  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 110

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 111 NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 167

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 168 ASITGAYVALIDAVNWLRGRGGLVSE-PITGSVQAISVGVVDGIPMLDLAYEEDSRADTD 226

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 227 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 275


>gi|300932726|ref|ZP_07147982.1| ribonuclease PH [Corynebacterium resistens DSM 45100]
          Length = 250

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R +    G      GS L   G+T+ +   ++    +         +  
Sbjct: 10  KRADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASV----EIGVPRFKKDSGE 65

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        G    R     RL  RA+   +  T     T+ I  
Sbjct: 66  GWLTAEYAMLPSSTHERMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDC 125

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA           G P+  PVA +++G++    D +  
Sbjct: 126 DVLQADGGTRTAAITGAYVALADALKVLKEQGVVPGEPLLPPVAAVSVGII----DGVAC 181

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T+ G    +Q   +        +   L  A+ G   +++  
Sbjct: 182 LDLPYEEDSRADVDMNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQ 241

Query: 536 SKVLSE 541
            + L++
Sbjct: 242 KEALAQ 247



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAV 70
           RP+++  G       G+VL  +G T V+ T   +      K       LT  Y     + 
Sbjct: 21  RPVRITRG-FTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGWLTAEYAMLPSST 79

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             ++P   ++   +       ISR++ R++R     ++  +N   +  +V+Q D      
Sbjct: 80  HERMPRESMK--GKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDCDVLQADGG--TR 135

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
             ++  A  AL  +           G P   PV    V  I+G   L+ P  ++ +  +D
Sbjct: 136 TAAITGAYVALADALKVLKEQGVVPGEPLLPPVAAVSVGIIDGVACLDLPYEEDSRADVD 195

Query: 176 LFVSGTQDAVLMVELEANQLSE---DVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T+    +      + +E     +   +       + +I A  +    
Sbjct: 196 MNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQKEALAQ 247


>gi|254449788|ref|ZP_05063225.1| ribonuclease PH [Octadecabacter antarcticus 238]
 gi|198264194|gb|EDY88464.1| ribonuclease PH [Octadecabacter antarcticus 238]
          Length = 235

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 22/234 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R IS +V + +   GS L   GDT  +   ++    DE+    L  +  
Sbjct: 1   MRPSGRKIDEMRSISIEVNVTRHAEGSCLIKCGDTHVLCTASI----DERVPPFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT    R       S R     RL  R++   + + A     + I  +
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQIIIDCD 116

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +A       LM AG     P+  PVA ++ G+         + 
Sbjct: 117 VIQADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLLIPVAAVSCGIYAGQS----VL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+   ED    +D     T   +  +QM  +    S + M   +  A +G   +
Sbjct: 173 DLDYPEDSEAGVDGNFVMTGDKLIEIQMSAEGSTFSRDQMNAMMDLADKGIAEL 226



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E   + R ++G+ L   G+T VL T   D  +           +T  Y     A 
Sbjct: 12  RSISIEVN-VTRHAEGSCLIKCGDTHVLCTASIDERVPPFLKNSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
                  +RRE+    +     I R+I RS+R    +    E Q+I   +V+Q D     
Sbjct: 71  N----TRMRREAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQIIIDCDVIQADGG--T 124

Query: 127 HVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
              S+     AL            ++S  P   PV         GQ VL+   P   E  
Sbjct: 125 RCASITGGWVALKLAVQKLMKAGDVISD-PLLIPVAAVSCGIYAGQSVLDLDYPEDSEAG 183

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
              +  ++G +   + +  E +  S D +   +         +  A     
Sbjct: 184 VDGNFVMTGDKLIEIQMSAEGSTFSRDQMNAMMDLADKGIAELTAAQIAAV 234


>gi|269137419|ref|YP_003294119.1| RNase PH [Edwardsiella tarda EIB202]
 gi|267983079|gb|ACY82908.1| RNase PH [Edwardsiella tarda EIB202]
 gi|304557493|gb|ADM40157.1| Ribonuclease PH [Edwardsiella tarda FL6-60]
          Length = 238

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R +       +   GS L   GDT+ +   ++    DE     L G  +
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V D      +
Sbjct: 117 DVIQADGGTRTASITGACVALADALGALVAAGKLKESPLKGMVAAVSVGIVADE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KTALEQ 238



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 25/185 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL+L T    + ++G+VL  +G+T VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPLRL-TRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             ++     +   +     + I R+I RS+R         E  +    +V+Q D      
Sbjct: 71  HSRMAREAAK--GKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            L   P +G V    V  +  + V +    ED   +  
Sbjct: 127 TASITGACVALADALGALVAAGKLKESPLKGMVAAVSVGIVADEAVCDLEYVEDSAAETD 186

Query: 174 LDLFV 178
           +++ +
Sbjct: 187 MNVVM 191


>gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2]
          Length = 237

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ +   T+    +E     + G  +
Sbjct: 1   MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATV----EEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTYMRSKGILKANPLKHMIAALSVGIYKGTP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED +   D  +  T++G +  +Q   +    +   +   L  AK G   + +  
Sbjct: 173 ADLEYTEDSVAETDMNIVMTETGKLIEVQGTAEGEPFAFEELDEMLTIAKHGLRELFDIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTI-TRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G      +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +       G+    P +  +    V    G  + +    ED   +  +
Sbjct: 128 ASITGACVALVDALTYMRSKGILKANPLKHMIAALSVGIYKGTPIADLEYTEDSVAETDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLSE----DVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++ T     ++E++     E    + + + +    +  + + +       
Sbjct: 188 NIVMTETGK---LIEVQGTAEGEPFAFEELDEMLTIAKHGLRELFDIQKAALA 237


>gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
 gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
          Length = 239

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R+I+          GS L   GDT+ I   ++    ++     L GT + 
Sbjct: 3   RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASV----EKNVPHFLRGTGQG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG+        G    R +   RL  R++   +         + I  +
Sbjct: 59  WITAEYGMLPRSTGDRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+D            G P+   +A +++G+ +       + 
Sbjct: 119 VIQADGGTRTASITGACVALVDAITAMREQGIITGNPLKHMIAAVSVGIYQ----GTAVL 174

Query: 478 DISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   +   L  A  G   ++ +  
Sbjct: 175 DLDYAEDSNAETDMNVIMTEQGGFIEVQGTAEGEPYSRIELDQLLGLADAGIQTLIEKQR 234

Query: 537 KV 538
             
Sbjct: 235 VA 236



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL T+G+T V+ T   ++++     G     +T  Y     + G   G    R  +
Sbjct: 25  AEGSVLVTFGDTKVICTASVEKNVPHFLRGTGQGWITAEYGMLPRSTGDRMGREAAR-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM-- 139
                + I R+I RS+R         E Q+    +V+Q D        S+  A  AL+  
Sbjct: 84  QGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCDVIQADGG--TRTASITGACVALVDA 141

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                    ++G P +  +    V    G  VL+    ED   +  +++ ++  Q   + 
Sbjct: 142 ITAMREQGIITGNPLKHMIAAVSVGIYQGTAVLDLDYAEDSNAETDMNVIMT-EQGGFIE 200

Query: 188 VEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
           V+   E    S   +   +       + +IE  
Sbjct: 201 VQGTAEGEPYSRIELDQLLGLADAGIQTLIEKQ 233


>gi|326797277|ref|YP_004315097.1| ribonuclease PH [Marinomonas mediterranea MMB-1]
 gi|326548041|gb|ADZ93261.1| Ribonuclease PH [Marinomonas mediterranea MMB-1]
          Length = 241

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +       +   GS L   GDT+ I   T+ +         L G  +
Sbjct: 1   MRPSGRAADQLRPMKFTRNFTKHAEGSVLIECGDTKVICTATVVSG----VPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +        T+ I  
Sbjct: 57  GWITAEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL D              PI   +A I++G+ K       +
Sbjct: 117 DVIQADGGTRTASISGGFVALADAVKTLVEQKKLKENPIVSQIAAISVGVYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D  G   +Q   +     +  M+  L  A++G   I+   
Sbjct: 173 LDLDYPEDSNAETDMNVIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIMEMQ 232

Query: 536 SKV 538
            +V
Sbjct: 233 RQV 235



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+K  T    + ++G+VL   G+T V+ T  V     +   G+    +T  Y     + 
Sbjct: 12  RPMKF-TRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                    R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+     AL            L   P    +    V    G  VL+   P     +  +
Sbjct: 128 ASISGGFVALADAVKTLVEQKKLKENPIVSQIAAISVGVYKGTPVLDLDYPEDSNAETDM 187

Query: 175 DLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  +   +   + ++  A      ++ ++  +         ++E   ++
Sbjct: 188 N-VIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIMEMQRQV 235


>gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
 gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
          Length = 254

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 30/244 (12%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED----EQYV 363
           +    R DGR  + +R I+ +  +     GS L   G+T+ I   T+  +      +Q V
Sbjct: 1   MSNHTRADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKV 60

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQF 419
                         Y+ LP +T +        G    R +   RL  RA+  VL  +   
Sbjct: 61  PG------GWLTAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRALRAVLDLSKLG 114

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVK 468
             TL I  ++ ++DG +  A++ G+ LA       L+D G     P +  +A I++G++ 
Sbjct: 115 ENTLWIDCDVLQADGGTRTASITGAYLATRLALQKLLDTGKLAENPFTDSIAAISVGILG 174

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
             +    L D+   ED    +D  +  T  G    +Q   +    + + +   L  A++G
Sbjct: 175 GRE----LLDLPYTEDKDAEVDANIVMTGRGHFVEVQTSGEEATFTYDQLQALLGLAQKG 230

Query: 528 RLHI 531
              I
Sbjct: 231 LKEI 234



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 24/229 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK--DGQDFFP---LTVNYQERTY 68
           RP+  E   IA  + G+VLA++G T V+     +  +     Q   P   LT  Y    Y
Sbjct: 16  RPITFEAN-IAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKVPGGWLTAEYSLLPY 74

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSP 126
           +        + +  +     + I R+I R++R +    K  +N   +  +V+Q D  +  
Sbjct: 75  STHDRKARDISK-GKLDGRTVEIQRLIGRALRAVLDLSKLGENTLWIDCDVLQADGGTRT 133

Query: 127 HVV--SMVAASAALM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
             +  + +A   AL        L+  PF   +    V  + G+ +L+    ED   +   
Sbjct: 134 ASITGAYLATRLALQKLLDTGKLAENPFTDSIAAISVGILGGRELLDLPYTEDKDAEVDA 193

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G    V  V+    +   + D +   +       K +    +  
Sbjct: 194 NIVMTGRGHFV-EVQTSGEEATFTYDQLQALLGLAQKGLKEIAALQTAF 241


>gi|238789552|ref|ZP_04633336.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
 gi|238722305|gb|EEQ13961.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
          Length = 238

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALEQ 238



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL         SG     P +G V    V  + G+ + +    ED   +  +
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSAAETDM 187

Query: 175 DLFV 178
           ++ +
Sbjct: 188 NVVM 191


>gi|297537277|ref|YP_003673046.1| ribonuclease PH [Methylotenera sp. 301]
 gi|297256624|gb|ADI28469.1| ribonuclease PH [Methylotenera sp. 301]
          Length = 243

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 97/250 (38%), Gaps = 24/250 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M     R   R +  +R++       +   GS L   GDT  +   ++    +E+    L
Sbjct: 1   MQSSNSRPSQRANNQLRNVEIIRHYTKHAEGSVLVKFGDTHVLCTASV----EEKVPGFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G  +      Y  LP +TG         G  S R     RL  R++  ++        +
Sbjct: 57  KGKGQGWVTAEYGMLPRSTGSRMDREAAKGKQSGRTQEIQRLIGRSLRAIIDLEKLGERS 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A++ G+ +AL D              P+ + VA I++G+ K   
Sbjct: 117 IHMDCDVIQADGGTRTASITGAYVALHDAISTLLKNGKLTTSPLKQGVAAISVGVYKGTP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+   ED     D  V  T D G   +Q   +    S + M   L  A  G   
Sbjct: 177 ----VLDLDYIEDSDCDTDMNVVMTADGGFVEIQGTAEGEPFSRDAMNAMLDLAAHGIKQ 232

Query: 531 ILNEMSKVLS 540
           ++ + ++VLS
Sbjct: 233 LVIKQNEVLS 242



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 25/218 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T VL T   +  +     G+    +T  Y     + G        + 
Sbjct: 27  KHAEGSVLVKFGDTHVLCTASVEEKVPGFLKGKGQGWVTAEYGMLPRSTGSRMDREAAK- 85

Query: 82  SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL- 138
            + +     I R+I RS+R +    K  +    +  +V+Q D        S+  A  AL 
Sbjct: 86  GKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIHMDCDVIQADGG--TRTASITGAYVALH 143

Query: 139 -MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
             +S L         P +  V    V    G  VL+    ED      +++ ++      
Sbjct: 144 DAISTLLKNGKLTTSPLKQGVAAISVGVYKGTPVLDLDYIEDSDCDTDMNVVMTA-DGGF 202

Query: 186 LMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + ++   E    S D +   +    +  K ++   +++
Sbjct: 203 VEIQGTAEGEPFSRDAMNAMLDLAAHGIKQLVIKQNEV 240


>gi|77361698|ref|YP_341273.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588968|sp|Q3IJI0|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 237

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R ++          GS L   G+T+ +   T+ +         + G  +
Sbjct: 1   MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESG----VPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +   A    T+ I  
Sbjct: 57  GWINAEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA             P+   +A I++G+         +
Sbjct: 117 DVIQADGGTRTASISGACVALVDALTHMRAKGMINSNPLKYMIAAISVGIY----KGQAI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S + +   L  AK     I++  
Sbjct: 173 SDLEYIEDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+   T      ++G+VL  +G T VL T   +  +     GQ    +   Y     A 
Sbjct: 12  RPVTF-TRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWINAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
                       +     + I R+I R++R     K    N   +  +V+Q D       
Sbjct: 71  -HTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL           M++  P +  +    V    GQ + +    ED   +  +
Sbjct: 128 ASISGACVALVDALTHMRAKGMINSNPLKYMIAAISVGIYKGQAISDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++ T   ++ ++   E    S D + + +    +  + +I+   +   
Sbjct: 188 NVILTET-GKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810]
 gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810]
          Length = 252

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R++    G L    GS+L   G T+ +   +              G+   
Sbjct: 12  RIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFT----AGVPRWKQGSGSG 67

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  V+   A    T+++  +
Sbjct: 68  WVTAEYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCD 127

Query: 429 ITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D          +P     ++  V+ I++G+V D      
Sbjct: 128 VLQADGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDD----RP 183

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+   ED     D  V  T SG    +Q   +        +   L  A  G   +   
Sbjct: 184 LLDLEYREDVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQLAQT 243

Query: 535 MSKVLSESR 543
              VL++ R
Sbjct: 244 QQDVLAQQR 252



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 30/193 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++  G +   ++G+ L  +G T VL    +   +   K G     +T  Y     A 
Sbjct: 22  REVRITRGWL-DHAEGSALIEFGRTRVLCAASFTAGVPRWKQGSGSGWVTAEYAMLPRAT 80

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
             + P   ++   +       ISR+I RS+R +        N  Q+  +V+Q D      
Sbjct: 81  NSRSPRESVK--GKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCDVLQADGG--TR 136

Query: 128 VVSMVAASAALMLS--------GLP-----FEGPVVGAQVDYINGQYVLNPRLDEDQGSL 174
             ++  A  AL  +         LP         V    V  ++ + +L+    ED    
Sbjct: 137 TAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLLDLEYRED---- 192

Query: 175 DLFVSGTQDAVLM 187
               +GT   V++
Sbjct: 193 --VAAGTDMNVVV 203


>gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 246

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTGEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAAL 234

Query: 535 MSKV 538
            +  
Sbjct: 235 QNDA 238



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTGEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P    V    V  ++G  +L+   +ED +   
Sbjct: 129 AAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEEDVRADT 188

Query: 175 DLFVSGTQDA-VLMVELEANQ 194
           D+ V  T D   + V+  A  
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEA 209


>gi|332159681|ref|YP_004296258.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318603777|emb|CBY25275.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325663911|gb|ADZ40555.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 238

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFLAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALEQ 238



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 24/199 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL         SG     P +G V    V  + G+ + +    ED   +  +
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVELEAN 193
           ++ +      ++ V+  A 
Sbjct: 188 NVVM-MEDGRMIEVQGTAE 205


>gi|194367042|ref|YP_002029652.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
 gi|226736943|sp|B4SU06|RNPH_STRM5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194349846|gb|ACF52969.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
          Length = 241

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +  Q G  +   GS L   G+T+ +   ++    + +    L G    
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R +   RL  R++   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+D              PI   VA +++G+         + 
Sbjct: 121 VLQADGGTRTAAITGAYVALVDAVNVLMKRGDIKRNPILGAVAAVSVGVY----RGTPVL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +L+   
Sbjct: 177 DLDYAEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRELLDAQQ 236

Query: 537 KVLSE 541
             LS 
Sbjct: 237 AALSA 241



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ ++ G   R ++G+VL  +GET VL T   +  +     G+    +T  Y     A 
Sbjct: 15  RPVVIQRG-FTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTAEYGMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I RS+R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +         +   P  G V    V    G  VL+    ED      +
Sbjct: 131 AAITGAYVALVDAVNVLMKRGDIKRNPILGAVAAVSVGVYRGTPVLDLDYAEDSDCDTDM 190

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++     + L    E +    D +   +       + +++A  
Sbjct: 191 NVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRELLDAQQ 236


>gi|113866973|ref|YP_725462.1| ribonuclease PH [Ralstonia eutropha H16]
 gi|123134290|sp|Q0KD27|RNPH_RALEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113525749|emb|CAJ92094.1| Ribonuclease PH [Ralstonia eutropha H16]
          Length = 239

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++      +      G+  
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASV----LAKVPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  RA+  V    A   YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAVSTMLRDGLIAASPIRDHVAAVSVGMV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    S   +    + A+ G   ++   
Sbjct: 173 LDLDYAEDSSCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           R + L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     A 
Sbjct: 12  RSISL-TRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + T     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  A  A             ++  P    V    V  ++G  VL+    ED      +
Sbjct: 128 AAITGAFVAAHDAVSTMLRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYAEDSSCDTDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    S   +             +++   + 
Sbjct: 188 NVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQREA 235


>gi|319795588|ref|YP_004157228.1| ribonuclease ph [Variovorax paradoxus EPS]
 gi|315598051|gb|ADU39117.1| ribonuclease PH [Variovorax paradoxus EPS]
          Length = 243

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +    G      GS L   G T+ +   ++    +E+      G+   
Sbjct: 6   RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASV----EERVPPHKKGSGEG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  R++  V    A    T+ +  +
Sbjct: 62  WVTAEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D              PI   VA I++G+V        L 
Sbjct: 122 VLQADGGTRTAAITGAFVAAQDAVNKLLAAGTLKASPIKGHVAAISVGIV----GGTPLL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    +   M + L  A++G   ++    
Sbjct: 178 DLEYTEDSSCDTDMNVVMTGAGHFVEVQGTAEGVAFTREEMNLLLGLAEKGIGELVTLQK 237

Query: 537 KV 538
           + 
Sbjct: 238 QA 239



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 23/215 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G+T VL T   +  +     G     +T  Y     A           + +
Sbjct: 28  AEGSVLIEFGQTRVLCTASVEERVPPHKKGSGEGWVTAEYGMLPRAT-HTRSSREAAKGK 86

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAAS------ 135
            T     I R+I RS+R +F      E    +  +V+Q D        ++  A       
Sbjct: 87  QTGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQADGG--TRTAAITGAFVAAQDA 144

Query: 136 -----AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV-L 186
                AA  L   P +G V    V  + G  +L+    ED      +++ ++G    V +
Sbjct: 145 VNKLLAAGTLKASPIKGHVAAISVGIVGGTPLLDLEYTEDSSCDTDMNVVMTGAGHFVEV 204

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
               E    + + +   +         ++    + 
Sbjct: 205 QGTAEGVAFTREEMNLLLGLAEKGIGELVTLQKQA 239


>gi|329114777|ref|ZP_08243534.1| Ribonuclease PH [Acetobacter pomorum DM001]
 gi|326695908|gb|EGE47592.1| Ribonuclease PH [Acetobacter pomorum DM001]
          Length = 267

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 97/269 (36%), Gaps = 28/269 (10%)

Query: 294 VFEDIQAKVVR----TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
            F   Q +++R        +  +R  GR  + +R I+ + G      GS+L   G T+ +
Sbjct: 2   QFYCRQKRIIRATHLNFTKELSMRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVL 61

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLA 405
              ++    + +    L G         Y  LP AT          G  S R     RL 
Sbjct: 62  CTASI----ENRVPPFLRGKGTGWVTAEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLI 117

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVP 454
            R++  V    A    ++ +  ++  +DG +  A++ G+ +AL  A            +P
Sbjct: 118 GRSLRAVTDLNALGEMSITLDCDVLNADGGTRCASITGAWVALRLALGKLVATNVLPRLP 177

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGIS 513
           +   VA ++ GL  +G     + D+   ED     D     T    I  +Q   +    +
Sbjct: 178 LRGQVAAVSCGLTTEG----AVLDLDYVEDSSASADTNFVLTADRRIVEIQGTAESAPFT 233

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSES 542
           E+        A++G   +       +  +
Sbjct: 234 EDAFDNLFALARKGVTELFEAQIAAVEAA 262



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 26/236 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG  A  ++G+ L   G T VL T   +  +     G+    +T  Y     A 
Sbjct: 35  RPITIETG-FAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVTAEYGMLPRAT 93

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E  +    +V+  D       
Sbjct: 94  -HTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLNALGEMSITLDCDVLNADGG--TRC 150

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL L+            LP  G V            VL+    ED       
Sbjct: 151 ASITGAWVALRLALGKLVATNVLPRLPLRGQVAAVSCGLTTEGAVLDLDYVEDSSASADT 210

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +  ++     ++ ++  A     +ED   +           + EA     +   K+
Sbjct: 211 NFVLTA-DRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQIAAVEAAEKK 265


>gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
 gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
 gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
 gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
 gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
 gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
 gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
 gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
 gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
 gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
 gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
 gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
 gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
 gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
 gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
 gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
          Length = 254

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + +G    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|284008817|emb|CBA75581.1| ribonuclease PH [Arsenophonus nasoniae]
          Length = 237

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R+++ VR I       +   GS L   GDT+ +   T+    DE     L G  +
Sbjct: 1   MRPENREADQVRPIKITRQYTKHAEGSVLIEFGDTKVLCNATI----DEGVPRFLKGQSQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G  + R +   RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRATNSRNIREAAKGKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA +++G+V    D   +
Sbjct: 117 DVIQADGGTRTAAISGACVALTDALNKMVAEGKLKQSPLKSMVAAVSVGIV----DGKPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED +   D  V   D+G +  +Q   +    S   ++  L  AK G   I    
Sbjct: 173 CDLEYSEDSVAETDMNVVMMDNGKMIEIQGTAEGEPFSHEELLSLLSLAKNGLQTIFTAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KEA 235



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T +  + ++G+VL  +G+T VL     D  +     GQ    +T  Y     A 
Sbjct: 12  RPIKI-TRQYTKHAEGSVLIEFGDTKVLCNATIDEGVPRFLKGQSQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  + T   + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  NSRNIREAAK-GKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            L   P +  V    V  ++G+ + +    ED   +  +
Sbjct: 128 AAISGACVALTDALNKMVAEGKLKQSPLKSMVAAVSVGIVDGKPICDLEYSEDSVAETDM 187

Query: 175 DLFV 178
           ++ +
Sbjct: 188 NVVM 191


>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
          Length = 242

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE +     +  +
Sbjct: 8   TGFRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAV-YGPREVQNKGQQV-NS 65

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +       Y     +TG+  R     RR      + R+ +   +         + I  ++
Sbjct: 66  KEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED  G  
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTP----LLDLNYLEDSAGGS 181

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNE 534
           D  V        +T +QMD K+   +   +M +A++  K    +I   
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREV 229



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 15/216 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           R LK E G + R +DG+ L   G T V+A V   R +++           +   Y+   +
Sbjct: 21  RQLKGEVGVVVR-ADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALVRCEYRMAEF 79

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G       RR+ +       IS +I +++           +Q+ I V     +     
Sbjct: 80  STGD-----RRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADGGTRS 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS--GTQDAV 185
             + AA+ AL  +G+P           Y+    +L+    ++  G  D+ V      D V
Sbjct: 135 ACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGILAKMDKV 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++++A  L  D   + +      CK +   I ++
Sbjct: 195 TLLQMDAK-LPIDTFENVMGLAIEGCKAIATYIREV 229


>gi|83950767|ref|ZP_00959500.1| ribonuclease PH [Roseovarius nubinhibens ISM]
 gi|83838666|gb|EAP77962.1| ribonuclease PH [Roseovarius nubinhibens ISM]
          Length = 238

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G+ +   GS +   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRALDEMRPVSIETGVTKHAEGSCMIRVGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PV  ++ G+        ++
Sbjct: 117 DVIQADGGTRCASITGGWVALKLAVQKLMKAGDVTSDPLVDPVGAVSCGIY----AGQLV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T SG +   QM  +    + + M   L  A++G   +    
Sbjct: 173 LDLDYPEDSEAGVDGNFIMTASGRMIEAQMSAEGSTFTRDQMTGLLDLAEKGVQELAELQ 232

Query: 536 SKVLSE 541
              ++ 
Sbjct: 233 RAAMNA 238



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG + + ++G+ +   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RPVSIETG-VTKHAEGSCMIRVGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  ----TSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL L            S  P   PV         GQ VL+   P   E 
Sbjct: 125 TRCASITGGWVALKLAVQKLMKAGDVTSD-PLVDPVGAVSCGIYAGQLVLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
               +  ++ +   +   +  E +  + D +   +       + + E  
Sbjct: 184 GVDGNFIMTASGRMIEAQMSAEGSTFTRDQMTGLLDLAEKGVQELAELQ 232


>gi|91784888|ref|YP_560094.1| ribonuclease PH [Burkholderia xenovorans LB400]
 gi|122970210|sp|Q13V47|RNPH_BURXL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91688842|gb|ABE32042.1| RNAse PH [Burkholderia xenovorans LB400]
          Length = 246

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 24/251 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTNNTQRPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  D              PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S + M   L  A  G   
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINT 232

Query: 531 ILNEMSKVLSE 541
           ++ +    L +
Sbjct: 233 LIAKQKAALEQ 243



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 22/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     S+      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A +  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVYDGLPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            ++G     + ++  A  +  S D +   +    +    +I       +   +
Sbjct: 195 VMTG-AGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQKGE 246


>gi|304399022|ref|ZP_07380891.1| ribonuclease PH [Pantoea sp. aB]
 gi|308188661|ref|YP_003932792.1| ribonuclease PH [Pantoea vagans C9-1]
 gi|304353482|gb|EFM17860.1| ribonuclease PH [Pantoea sp. aB]
 gi|308059171|gb|ADO11343.1| ribonuclease PH [Pantoea vagans C9-1]
          Length = 238

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ VR ++      +   GS L   G+T+ +   ++    DE     L G  +
Sbjct: 1   MRPAGRSAQQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTASV----DEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   +   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKALGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA I++G+VK       L
Sbjct: 117 DVIQADGGTRTASITGACVALADALNKLVASGKLKANPMKGMVAAISVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   ++   
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIEELIQAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 25/185 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +GET VL T   D  +     GQ    +T  Y     + 
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGETKVLCTASVDEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             ++     +   +     + I R+I RS+R         E  +    +V+Q D      
Sbjct: 71  HSRMAREAAK--GKQGGRTLEIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL         SG     P +G V    V  + G+ + +    ED   +  
Sbjct: 127 TASITGACVALADALNKLVASGKLKANPMKGMVAAISVGIVKGEALCDLEYVEDSAAETD 186

Query: 174 LDLFV 178
           +++ +
Sbjct: 187 MNVVM 191


>gi|327439325|dbj|BAK15690.1| RNase PH [Solibacillus silvestris StLB046]
          Length = 250

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 23/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R    +R +      L    GS L   G+T+ I   T+    +E+    L G  + 
Sbjct: 3   RHDLRAVNELRPVQIDNNYLMHPEGSVLITVGNTKVICTATI----EEKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT + +R     G  S R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITAEYSMLPRATEQRTRRESSAGKVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+  A             P++  +A  ++G +   ++   + 
Sbjct: 119 VIQADGGTRTASITGAFVAMTQAIAKLGVDKPFVNFPVTDYLAATSVGKL---ENIGAVL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +D  V  T +G    +Q   +    S + +   L   + G   ++    
Sbjct: 176 DLNYVEDSAAQVDMNVIMTGAGEFVELQGTGEEATFSRSELNELLDLGEAGIAQLIEMQK 235

Query: 537 KVLSE 541
             L +
Sbjct: 236 TALGD 240



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 77/216 (35%), Gaps = 32/216 (14%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE---S 82
           G+VL T G T V+ T   +  +     GQ    +T  Y     A  +      RRE    
Sbjct: 27  GSVLITVGNTKVICTATIEEKVPGFLRGQGKGWITAEYSMLPRATEQ----RTRRESSAG 82

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALML 140
           + +   + I R+I R++R +       E    +  +V+Q D        S+  A  A+  
Sbjct: 83  KVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCDVIQADGG--TRTASITGAFVAMTQ 140

Query: 141 S------GLPF-EGPV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
           +        PF   PV        V    N   VL+    ED      +++ ++G  + V
Sbjct: 141 AIAKLGVDKPFVNFPVTDYLAATSVGKLENIGAVLDLNYVEDSAAQVDMNVIMTGAGEFV 200

Query: 186 LMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
             ++    + +     + + +  G      +IE   
Sbjct: 201 -ELQGTGEEATFSRSELNELLDLGEAGIAQLIEMQK 235


>gi|23501084|ref|NP_697211.1| ribonuclease PH [Brucella suis 1330]
 gi|38258602|sp|Q8G2Y5|RNPH_BRUSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23346953|gb|AAN29126.1| ribonuclease PH [Brucella suis 1330]
          Length = 238

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R IS + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TGE  R     G    R     R   R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGERMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G  +AL +                +   VA I+ G+     + + 
Sbjct: 117 DVIQADGGTRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHVAAISCGIY----EGVP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED +   D     T   GI  +Q   +    SE      ++ A+ G   +++ 
Sbjct: 173 VLDLDYAEDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKMAVA 238



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 35/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +  E G +++ ++G+ L  +G+T VL T   +  +  G         +T  Y     +
Sbjct: 12  RAISFERG-VSKHAEGSCLVKFGDTHVLCTASLEEKV-PGWMRNTGKGWVTAEYGMLPRS 69

Query: 70  VGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
            G+     +RRE    +       I R I RS+R +       E Q+    +V+Q D   
Sbjct: 70  TGE----RMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                ++     AL                   +  V         G  VL+    ED  
Sbjct: 125 -TRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYAEDSV 183

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +   +  ++G +  ++ ++  A  +  SE+     +    +    ++        
Sbjct: 184 AETDSNFVMTG-KGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|94309797|ref|YP_583007.1| ribonuclease PH [Cupriavidus metallidurans CH34]
 gi|166228306|sp|Q1LQ38|RNPH_RALME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|93353649|gb|ABF07738.1| ribonuclease PH [Cupriavidus metallidurans CH34]
          Length = 238

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I+      +   GS L   GDT+ +   ++      +      G+  
Sbjct: 1   MRPSGRAADALRPITLTRQYTRHAEGSVLSAFGDTKVLCTASV----LAKVPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  RA+  V    A   YT+ +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D              PI   VA +++G+V    + + +
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAVSAMLRDGQIKASPIRDFVAAVSVGMV----NGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    S   +    + A+ G   ++   
Sbjct: 173 LDLDYAEDSNCDTDMNVVMTGSGGFVEVQGTAEGTPFSRADLDAMTRLAEAGIAELVRHQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 82/226 (36%), Gaps = 20/226 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           RP+ L T +  R ++G+VL+ +G+T VL T  V  +    K G     +T  Y     A 
Sbjct: 12  RPITL-TRQYTRHAEGSVLSAFGDTKVLCTASVLAKVPPHKKGSGEGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F      E    +  +V+Q D  +    
Sbjct: 71  -HTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDCDVLQADGGTRTAA 129

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
                V +  A SA L    +   P    V    V  +NG  VL+    ED      +++
Sbjct: 130 ITGAFVAAHDAVSAMLRDGQIKASPIRDFVAAVSVGMVNGVPVLDLDYAEDSNCDTDMNV 189

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            ++G+   V +    E    S   +             ++    + 
Sbjct: 190 VMTGSGGFVEVQGTAEGTPFSRADLDAMTRLAEAGIAELVRHQKQA 235


>gi|221101900|ref|XP_002160475.1| PREDICTED: similar to putative exosome complex exonuclease RRP41
           [Hydra magnipapillata]
          Length = 244

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 93/237 (39%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  + +R DGR    +R I+A+ G+  +  GS+   +G+T+ I  V  G  E      
Sbjct: 5   DLVSPEGLRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASV-YGPHEVSNRSK 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           +L  +        ++    +  E        R+      L  +     +         + 
Sbjct: 64  TLHDST--LINCQFSMATFSMSERKNRPKGDRKSTEISMLLEKTFATAIMTELYPRSQID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ +SDG    A +  ++LAL+DAGVP+   V       V++ +    L+DI+  E+
Sbjct: 122 IYVQVIQSDGGVIAACINVATLALIDAGVPMKDFVCACTSSYVQEKN----LTDINHLEE 177

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
             G     +A        +        +  + +   L+  K+G L I N + + +  
Sbjct: 178 SSGSCQLTLAMLPRT-AKVVAFQVSSRLHLDNLEELLKITKQGCLDIYNVLQQAVEA 233



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 74/206 (35%), Gaps = 13/206 (6%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           Q+DG+     G T V+A+V     + +      D   +   +   T+++ +      +  
Sbjct: 34  QADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDSTLINCQFSMATFSMSE-----RKNR 88

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +       IS +++++            +Q+ I V     +       +  A+ AL+ +
Sbjct: 89  PKGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVIQSDGGVIAACINVATLALIDA 148

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLSED 198
           G+P +  V      Y+  + + +    E+      L L +      V+  ++ +  L  D
Sbjct: 149 GVPMKDFVCACTSSYVQEKNLTDINHLEESSGSCQLTLAMLPRTAKVVAFQVSSR-LHLD 207

Query: 199 VVLDAIIFGHNECKPVIEAISKLAKM 224
            + + +      C  +   + +  + 
Sbjct: 208 NLEELLKITKQGCLDIYNVLQQAVEA 233


>gi|197286965|ref|YP_002152837.1| ribonuclease PH [Proteus mirabilis HI4320]
 gi|226736924|sp|B4F0W3|RNPH_PROMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194684452|emb|CAR46192.1| ribonuclease PH [Proteus mirabilis HI4320]
          Length = 238

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR I+      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G  + R +   RL  R++   +   A   +T+ +  
Sbjct: 57  GWVTAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V    D   L
Sbjct: 117 DVIQADGGTRTASISGACVALVDALNKMVTEGKLKKSPLKSMVAAVSVGIV----DGQPL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D G +  +Q   +    S   ++  L  AK G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQ 232

Query: 536 SKVLSE 541
            + L +
Sbjct: 233 KEALKQ 238



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 34/238 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPITI-TRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                    R  + T   + I R+I RS+R         E    V  +V+Q D       
Sbjct: 71  NSRNAREAAR-GKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            S+  A  AL+           L   P +  V    V  ++GQ + +    ED       
Sbjct: 128 ASISGACVALVDALNKMVTEGKLKKSPLKSMVAAVSVGIVDGQPLCDLEYVEDSA----- 182

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE-------CKPVIEAISKLAKMCAKE 228
            + T   V+M++ +   +      +   F H E        K  +E I +  K   K+
Sbjct: 183 -AETDMNVVMID-DGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 238


>gi|262277778|ref|ZP_06055571.1| ribonuclease PH [alpha proteobacterium HIMB114]
 gi|262224881|gb|EEY75340.1| ribonuclease PH [alpha proteobacterium HIMB114]
          Length = 237

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           + R +  +R +      +    GS L   G+T  I   +     +++    L G+ +   
Sbjct: 3   NNRSNTELRPVEIIPNYINNADGSCLIKFGNTHVICTASY----EDKVPRWLKGSGKGWV 58

Query: 375 MMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              Y  LP +T E  R     G    R     RL  R++   +  +      + I  ++ 
Sbjct: 59  TAEYGMLPRSTNERMRREASAGKIGGRTSEIQRLIGRSLRASIDLSLLGENLITIDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G  +AL                PI   VA I+ G+V        L D+
Sbjct: 119 QADGGTRTASITGGFVALNQCVKILQDKKLINTNPIKNHVAAISCGVVNGE----TLVDL 174

Query: 480 SGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D        + I  +Q+  +    SE  +   L+ +K+    ++ +  + 
Sbjct: 175 DYKEDSGADVDANFVINEKNEIIELQLTGEQTTCSEEKLNEMLKYSKQSIQLLIQKQKEA 234

Query: 539 LSE 541
           LS 
Sbjct: 235 LSA 237



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 29/219 (13%)

Query: 26  QSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRE- 81
            +DG+ L  +G T V+ T    D+  +   G     +T  Y     +  +     +RRE 
Sbjct: 22  NADGSCLIKFGNTHVICTASYEDKVPRWLKGSGKGWVTAEYGMLPRSTNER----MRREA 77

Query: 82  --SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAA 137
              +       I R+I RS+R         E    +  +V+Q D        S+     A
Sbjct: 78  SAGKIGGRTSEIQRLIGRSLRASIDLSLLGENLITIDCDVIQADGG--TRTASITGGFVA 135

Query: 138 L-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
           L           +++  P +  V       +NG+ +++    ED G     +  ++   +
Sbjct: 136 LNQCVKILQDKKLINTNPIKNHVAAISCGVVNGETLVDLDYKEDSGADVDANFVINEKNE 195

Query: 184 AV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            + L +  E    SE+ + + + +     + +I+   + 
Sbjct: 196 IIELQLTGEQTTCSEEKLNEMLKYSKQSIQLLIQKQKEA 234


>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
 gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
          Length = 245

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 104/246 (42%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+ +R+DGR S  +R I  ++G+  +  GS+   +G+T+ +  V  G     Q   
Sbjct: 2   ELLSDEGLRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAV-YGPH---QAPA 57

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S  +       Y+    +TGE  +     R+        ++A+   +         + 
Sbjct: 58  KKSNHEECVVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+  +DG +  A+V  ++LAL+DAG+ + + V      L       + L D+S  E+
Sbjct: 118 VYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGK----VPLMDVSNLEE 173

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G     VA   +   I  M+M  +      + +   L+ A +G   +   + + + + 
Sbjct: 174 MSGGPTLTVASLPNSGKIAFMEMSQR---FHLDHLPNVLETALQGCREVQKIIDQAVRDH 230

Query: 543 RLQLGE 548
             QLG+
Sbjct: 231 VTQLGQ 236



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 76/207 (36%), Gaps = 16/207 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           Q DG+     G T VLA V         K   +   +   Y   T++ G+      ++  
Sbjct: 31  QPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVNCQYSMATFSTGE-----RKKRP 85

Query: 83  RPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R       ++  + +++          K++  V I V+  D  +     S+ AA+ AL+ 
Sbjct: 86  RGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLMADGGNY--CASVNAATLALID 143

Query: 141 SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQD--AVLMVELEANQLSE 197
           +G+  +  V            +++   L+E  G   L V+   +   +  +E+       
Sbjct: 144 AGICLKEYVCACTASLAGKVPLMDVSNLEEMSGGPTLTVASLPNSGKIAFMEMSQRFHL- 202

Query: 198 DVVLDAIIFGHNECKPVIEAISKLAKM 224
           D + + +      C+ V + I +  + 
Sbjct: 203 DHLPNVLETALQGCREVQKIIDQAVRD 229


>gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 248

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 5   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVT----EGVPRWRKGSGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 61  WVTGEYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V    D   
Sbjct: 121 VLQADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIV----DGTP 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 177 LLDLCYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAAL 236

Query: 535 MSKV 538
            +  
Sbjct: 237 QNDA 240



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     + 
Sbjct: 15  RPVTIERGW-SKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTGEYSMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 74  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P    V    V  ++G  +L+   +ED +   
Sbjct: 131 AAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEEDVRADT 190

Query: 175 DLFVSGTQDA-VLMVELEANQ 194
           D+ V  T D   + V+  A  
Sbjct: 191 DMNVVCTGDGRFVEVQGTAEA 211


>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 241

 Score =  153 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 12/245 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R I A+VG++ +  GS++F  G+T+ I  V  G RE +    
Sbjct: 2   EYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV-YGPREIQNKSQ 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                     +  Y+    +TG+  R     RR      + R+ +   +         + 
Sbjct: 61  QKKN-DHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED
Sbjct: 119 IFLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP----LLDLNYVED 174

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G  D  V        +T +QMD K   +           A  G   I   + +VL E+
Sbjct: 175 SAGGADVTVGILPKLDKVTLLQMDAK---LPMETFETVFALASEGCKAIAERIREVLQEN 231

Query: 543 RLQLG 547
             QL 
Sbjct: 232 TKQLE 236



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 16/223 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-----DFFPLTVNYQERTY 68
           R +  E G +++ +DG+ +   G T V+A V   R +++       D   +   Y    +
Sbjct: 20  RQIVAEVGVVSK-ADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQF 78

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G       RR  +       +S +I +++           +Q+ I +     +     
Sbjct: 79  STGD------RRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGGTRS 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS--GTQDAV 185
             + AA+ AL  +G+P     V     Y+N   +L+    ++  G  D+ V      D V
Sbjct: 133 ACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPKLDKV 192

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            +++++A  L  +            CK + E I ++ +   K+
Sbjct: 193 TLLQMDAK-LPMETFETVFALASEGCKAIAERIREVLQENTKQ 234


>gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222]
 gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222]
          Length = 241

 Score =  153 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R IS + G+++   GS L   GDT+ +   ++    +E+    L G+ +
Sbjct: 2   MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSASI----EEKAPPFLKGSGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G  S R     RL  RA+   + + A     + +  
Sbjct: 58  GWVTAEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL                PI   VA ++ G+         +
Sbjct: 118 DVIQADGGTRCAAITGGWVALRLAMNKLLKAGIVTADPIMDHVAAVSCGIYAGQP----I 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T +G +  +QM  +    S   M   L  A+ G   ++   
Sbjct: 174 LDLDYAEDSEAGTDGNFIMTGAGRLIEVQMSAEGATFSRPEMNQLLDLAEAGIAELVRAQ 233

Query: 536 SKVLSES 542
           ++ ++ +
Sbjct: 234 NEAVACA 240



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 30/236 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG + R ++G+ L + G+T VL +   +        G     +T  Y     A 
Sbjct: 13  RPISIETGIM-RHAEGSCLISCGDTRVLCSASIEEKAPPFLKGSGQGWVTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 72  N----TRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDCDVIQADGG-- 125

Query: 126 PHVVSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               ++     AL L       +G+    P    V         GQ +L+    ED    
Sbjct: 126 TRCAAITGGWVALRLAMNKLLKAGIVTADPIMDHVAAVSCGIYAGQPILDLDYAEDSEAG 185

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
              +  ++G    + + +  E    S   +   +         ++ A ++      
Sbjct: 186 TDGNFIMTGAGRLIEVQMSAEGATFSRPEMNQLLDLAEAGIAELVRAQNEAVACAG 241


>gi|53720176|ref|YP_109162.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|53726007|ref|YP_103672.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124386333|ref|YP_001028601.1| ribonuclease PH [Burkholderia mallei NCTC 10229]
 gi|126449191|ref|YP_001081500.1| ribonuclease PH [Burkholderia mallei NCTC 10247]
 gi|126454192|ref|YP_001067258.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|134280511|ref|ZP_01767222.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|162139483|ref|YP_992156.2| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|162210051|ref|YP_334425.2| ribonuclease PH [Burkholderia pseudomallei 1710b]
 gi|167739724|ref|ZP_02412498.1| ribonuclease PH [Burkholderia pseudomallei 14]
 gi|167816928|ref|ZP_02448608.1| ribonuclease PH [Burkholderia pseudomallei 91]
 gi|167825331|ref|ZP_02456802.1| ribonuclease PH [Burkholderia pseudomallei 9]
 gi|167846833|ref|ZP_02472341.1| ribonuclease PH [Burkholderia pseudomallei B7210]
 gi|167895425|ref|ZP_02482827.1| ribonuclease PH [Burkholderia pseudomallei 7894]
 gi|167912075|ref|ZP_02499166.1| ribonuclease PH [Burkholderia pseudomallei 112]
 gi|167920049|ref|ZP_02507140.1| ribonuclease PH [Burkholderia pseudomallei BCC215]
 gi|226193870|ref|ZP_03789472.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242317328|ref|ZP_04816344.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254175672|ref|ZP_04882332.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|254181028|ref|ZP_04887626.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|254191874|ref|ZP_04898377.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|254202370|ref|ZP_04908733.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|254259675|ref|ZP_04950729.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
 gi|254298852|ref|ZP_04966302.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|254356396|ref|ZP_04972672.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|61215844|sp|Q62HZ8|RNPH_BURMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215857|sp|Q63RV5|RNPH_BURPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228270|sp|A3MML4|RNPH_BURM7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228271|sp|A2S9I2|RNPH_BURM9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228272|sp|A3NY37|RNPH_BURP0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52210590|emb|CAH36573.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|52429430|gb|AAU50023.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124294353|gb|ABN03622.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229]
 gi|126227834|gb|ABN91374.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|126242061|gb|ABO05154.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10247]
 gi|134248518|gb|EBA48601.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|147746617|gb|EDK53694.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|148025393|gb|EDK83547.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|157808936|gb|EDO86106.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|157939545|gb|EDO95215.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|160696716|gb|EDP86686.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|184211567|gb|EDU08610.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|225934175|gb|EEH30160.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242140567|gb|EES26969.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254218364|gb|EET07748.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
          Length = 243

 Score =  153 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RERGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  V  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 173 GGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRLQRAA 240



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++GAVL  +G+T V+ T      + +    +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+   DED      
Sbjct: 132 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTD 191

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G    V +    E    S   +   +         ++       + 
Sbjct: 192 MNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALEA 243


>gi|237736793|ref|ZP_04567274.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
 gi|229420655|gb|EEO35702.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score =  153 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 107/262 (40%), Gaps = 24/262 (9%)

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
             I+  ++   M  KK+R DGRD + +R + A         GS L   G+T+ I   T+ 
Sbjct: 2   NMIKEMIIEADMRTKKLREDGRDVDELRVLKATKDFNLYAEGSVLMECGNTKVICTATV- 60

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHP 411
               ++    L    +      Y+ +P ATGE ++     G  + R +   RL  RA+  
Sbjct: 61  ---SDKVPPFLKNQGKGWLTAEYSMIPRATGERNQRESAKGKLTGRTMEIQRLIGRALRT 117

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM-------DAGV----PISKPVA 460
            +        T+ I  ++ ++DG +   ++ G  +AL          GV    PI   VA
Sbjct: 118 AVDLEKLGERTITIDCDVIQADGGTRTTSITGGYIALALAMKKLVAEGVLAENPIISNVA 177

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVM 519
            I++G+V    +   + D+   ED    +D  V     G    +Q   +    +   +  
Sbjct: 178 AISVGIV----NGTPVLDLKYTEDSAAEVDMNVVMNGEGKFVEVQGTGEEATYTRKELNE 233

Query: 520 ALQQAKRGRLHILNEMSKVLSE 541
            L  A++G   I+   ++++ E
Sbjct: 234 MLDLAEKGLKEIMELQNRIIGE 255



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 82/214 (38%), Gaps = 21/214 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +      Q    LT  Y     A G+        + +
Sbjct: 41  AEGSVLMECGNTKVICTATVSDKVPPFLKNQGKGWLTAEYSMIPRATGE-RNQRESAKGK 99

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM-- 139
            T   + I R+I R++R      K  +    +  +V+Q D  +    ++    + AL   
Sbjct: 100 LTGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQADGGTRTTSITGGYIALALAMK 159

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                  L+  P    V    V  +NG  VL+ +  ED   +  +++ ++G +   + V+
Sbjct: 160 KLVAEGVLAENPIISNVAAISVGIVNGTPVLDLKYTEDSAAEVDMNVVMNG-EGKFVEVQ 218

Query: 190 LEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
               +   +   + + +       K ++E  +++
Sbjct: 219 GTGEEATYTRKELNEMLDLAEKGLKEIMELQNRI 252


>gi|72119576|gb|AAZ61839.1| RNAse PH [Ralstonia eutropha JMP134]
          Length = 258

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++      +      G+  
Sbjct: 20  MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASV----LAKVPPHKKGSGE 75

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  RA+  V    A   YTL +  
Sbjct: 76  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDC 135

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + L
Sbjct: 136 DVLQADGGTRTAAITGAFVAAHDAISTMLRDGLIAASPIRDFVAAVSVGMV----DGVPL 191

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    S   +    + A+ G   ++   
Sbjct: 192 LDLDYAEDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQ 251

Query: 536 SKV 538
            + 
Sbjct: 252 RQA 254



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           R + L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     A 
Sbjct: 31  RSISL-TRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVTAEYGMLPRAT 89

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + T     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 90  -HTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQADGG--TRT 146

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  A  A             ++  P    V    V  ++G  +L+    ED      +
Sbjct: 147 AAITGAFVAAHDAISTMLRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYAEDSNCDTDM 206

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    S   +        +    ++    + 
Sbjct: 207 NVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQA 254


>gi|56964417|ref|YP_176148.1| ribonuclease PH [Bacillus clausii KSM-K16]
 gi|61215808|sp|Q5WEM3|RNPH_BACSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56910660|dbj|BAD65187.1| ribonuclease PH [Bacillus clausii KSM-K16]
          Length = 250

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 23/253 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R++       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASI----ENRVPPFLRGQNK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP ATG+ +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWLAAEYSMLPRATGQRTIREAAKGKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+            +  PI+  +A I++G++ +      +
Sbjct: 117 DVIQADGGTRTASITGAYVALVLAVQKAFAEKTISAWPITDFLAAISVGILPEEG---AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  T SG    +Q   +    + + +   L  A  G   +++  
Sbjct: 174 CDLCYSEDSQAKVDMNIVQTGSGDFVEVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQ 233

Query: 536 SKVLSESRLQLGE 548
              L E+   + E
Sbjct: 234 RPFLGEAASWIEE 246



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 22/222 (9%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL + G+T V+ T   +  +     GQ+   L   Y     A G+        +
Sbjct: 22  KHAEGSVLISVGDTKVICTASIENRVPPFLRGQNKGWLAAEYSMLPRATGQ-RTIREAAK 80

Query: 82  SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH---------VVS 130
            + +   + I R+I R++R +    K  +    +  +V+Q D  +            V++
Sbjct: 81  GKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDCDVIQADGGTRTASITGAYVALVLA 140

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP----RLDEDQGSLDLFVSGTQDAVL 186
           +  A A   +S  P    +    V  +  +  +         + +  +++  +G+ D V 
Sbjct: 141 VQKAFAEKTISAWPITDFLAAISVGILPEEGAVCDLCYSEDSQAKVDMNIVQTGSGDFV- 199

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            V+    +   +   + + +         +I          A
Sbjct: 200 EVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQRPFLGEAA 241


>gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680]
 gi|61216038|sp|Q82D17|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680]
          Length = 244

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R I+ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVKADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVI 234

Query: 535 MSKV 538
               
Sbjct: 235 QRAA 238



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     A 
Sbjct: 13  RPITIERGW-SKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P  G V    V  + G  +L+   +ED +   
Sbjct: 129 AAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYEEDVKADT 188

Query: 175 DLFVSGTQDA-VLMVELEANQ 194
           D+ V  T D   + V+  A  
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEA 209


>gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2]
 gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1]
 gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1]
          Length = 244

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + +  R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       
Sbjct: 1   MSETSRIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRK 56

Query: 368 GTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           G+        Y  LP AT E S    R G    R     RL  R++  V+   A    T+
Sbjct: 57  GSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D
Sbjct: 117 ILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            I + D++ +ED     D  V  + +G    +Q   +    + N++   L  A  G   +
Sbjct: 173 GIPMLDLAYEEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATL 232

Query: 532 LNEMSKV 538
               S+ 
Sbjct: 233 KQAQSEA 239



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 16  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 75  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 131

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 132 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYEEDSRADTD 190

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 191 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 239


>gi|268593302|ref|ZP_06127523.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
 gi|291310999|gb|EFE51452.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
          Length = 237

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R I+      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRQADQMRPITITRNYTKHAEGSVLIEFGDTKVLCNATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  + R +   RL  R++   +       YT+ +  
Sbjct: 57  GWVTAEYGMLPRATNSRNQREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D           A  P+   VA +++G+V        L
Sbjct: 117 DVIQADGGTRTAAISGACVALVDALNNMVEQGKIAKSPLKSMVAAVSVGIVNQE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D G +  +Q   +    S   ++  L  AK G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLALLALAKTGLNTIFEAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPITI-TRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                    R  + T   + I R+I RS+R      K  +    +  +V+Q D       
Sbjct: 71  NSRNQREAAR-GKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            ++  A  AL+           ++  P +  V    V  +N + + +    ED       
Sbjct: 128 AAISGACVALVDALNNMVEQGKIAKSPLKSMVAAVSVGIVNQEALCDLEYVEDS------ 181

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE 210
            +   D  +++  +   +      +   F H E
Sbjct: 182 -AAETDMNVVMMDDGRMIEVQGTAEGEPFSHEE 213


>gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 239

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 24/229 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I       +   GS L   GDT+ I   ++    +E+    + G  R
Sbjct: 1   MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASV----EERVPGWMRGQGR 56

Query: 372 NDFMMHYNFLPCAT----GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    G  +  G    R +   RL  R++   +   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+  PVA +++G+         +
Sbjct: 117 DVIQADGGTRTASITGAWIALHDAVQHILQQDLLKTDPMIGPVASVSVGV----HKGTPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQA 524
            D+   ED     D  V   D  G   +Q   +    S   +   L  A
Sbjct: 173 LDLDYAEDSSAETDMNVVMNDQGGFIEVQGTAEAAAYSRQELDAMLDLA 221



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 27/220 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP++  T    + ++G+VL  +G+T V+ T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPIRF-TRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQGRGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G    R  +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  DSRMGREASR-GKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            S+  A  AL   +  +         P  GPV    V    G  +L+    ED       
Sbjct: 128 ASITGAWIALHDAVQHILQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYAEDSS----- 182

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
                D  +++  +   +      +A  +   E   +++ 
Sbjct: 183 --AETDMNVVMNDQGGFIEVQGTAEAAAYSRQELDAMLDL 220


>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
          Length = 240

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 26/248 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+++ +R+++     +    GS+L   G+T+ +V  +L           L G  R
Sbjct: 1   MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLT----AGVPRWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R     RL  R++  V+        TL +  
Sbjct: 57  GWVTAEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL D             A  PI   +A I++G++    D  
Sbjct: 117 DVLQADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGII----DGE 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  V  T SG    +Q   +      + +   L  A +G   +  
Sbjct: 173 PVLDLPYVEDSRADTDMNVVMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTG 232

Query: 534 EMSKVLSE 541
             S+VLS+
Sbjct: 233 IQSEVLSK 240



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 26/181 (14%)

Query: 27  SDGAVLATYGETVVLA----TVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           ++G+ L  +G T VL     T    R LK GQ    +T  Y     A           + 
Sbjct: 24  AEGSALVEFGNTRVLVAASLTAGVPRWLK-GQGRGWVTAEYAMLPRAT-DSRNTRESVKG 81

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALML 140
           +       ISR+I RS+R +       E  ++   +V+Q D        S+  A  AL  
Sbjct: 82  KLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVLQADGG--TRTASITGAYVALAD 139

Query: 141 S-------GL------PFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL--FVSGTQDA 184
           +       G+      P +  +    V  I+G+ VL+ P +++ +   D+   ++G+   
Sbjct: 140 AIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPYVEDSRADTDMNVVMTGSGQF 199

Query: 185 V 185
           V
Sbjct: 200 V 200


>gi|206561359|ref|YP_002232124.1| ribonuclease PH [Burkholderia cenocepacia J2315]
 gi|226736893|sp|B4EBP8|RNPH_BURCJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|198037401|emb|CAR53336.1| ribonuclease PH [Burkholderia cenocepacia J2315]
          Length = 246

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ +   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVA----ERVPEFLRERGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P TL I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTLHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D              PI+  VA I++G+     +   + 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLIAAGKLTRSPITDHVAAISVGVY----EGAPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T VL T      + +    +    LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-LHIDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S   AA  L+  P    V    V    G  VL+    ED      +++ ++G     +
Sbjct: 145 AVSTLIAAGKLTRSPITDHVAAISVGVYEGAPVLDLDYAEDSRCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +         +++   
Sbjct: 204 EVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQK 238


>gi|239994379|ref|ZP_04714903.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ +   T+    +E     + G  +
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATV----EEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTYMRAKGIIKTNPLKHMIAALSVGIY----EGTPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  +  T++G +  +Q   +    S   +   L+  K G   + +  
Sbjct: 173 ADLEYTEDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDEMLKIGKHGLRELFDIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTI-TRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWITAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G      +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +       G+    P +  +    V    G  + +    ED   +  +
Sbjct: 128 ASITGACVALVDALTYMRAKGIIKTNPLKHMIAALSVGIYEGTPIADLEYTEDSEAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++ T   + +    E    S + + + +  G +  + + +       
Sbjct: 188 NIVMTETGKLIEVQGTAEGEPFSFEELDEMLKIGKHGLRELFDIQKAALA 237


>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
          Length = 190

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 7/194 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R I A++G + +  GS++F  G+T+ I  V  G RE +    
Sbjct: 2   EYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAV-YGPREVQNRNQ 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +S          Y+    +TG+  R     RR      + R+ +   +         + 
Sbjct: 61  QIS--SHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  ++LAL DAG+P+   V   + G +        L D++  ED
Sbjct: 119 IYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTP----LLDLNYVED 174

Query: 485 HLGHMDFKVAGTDS 498
             G  D  +     
Sbjct: 175 SAGGPDVTLGILPK 188



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 14/165 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           R ++ E G +++ +DG+ +   G T V+A V   R +++          +   Y    ++
Sbjct: 20  RQIRAEIGAVSK-ADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPH 127
            G        R+ +       IS +I +++          +++  + + V+Q D      
Sbjct: 79  TGD-----RMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGG--TR 131

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
              + AA+ AL  +G+P    V      Y+N   +L+    ED  
Sbjct: 132 SACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSA 176


>gi|289668014|ref|ZP_06489089.1| ribonuclease PH [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 241

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T  V +R      G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL  +         +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|114321593|ref|YP_743276.1| ribonuclease PH [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310932|sp|Q0A5V1|RNPH_ALHEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114227987|gb|ABI57786.1| RNAse PH [Alkalilimnicola ehrlichii MLHE-1]
          Length = 238

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +       +   GS L   GDT+ +   ++    +E+    L    R
Sbjct: 1   MRPSGRKPDELRPVRLTRHYTRHAEGSVLVEFGDTRVLCTASV----EERVPPWLRNQGR 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG  +      G    R I   RL  RA+   +   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGTRNDREAARGKQQGRTIEIQRLIGRALRAAVDLEALGERRVVLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+DA             PI   VA +++G+ +       +
Sbjct: 117 DVLQADGGTRTAAITGAYVALVDACNLLRKEGRIRRSPIFGQVAAVSVGIYQGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   +  G   +Q   +      + +    + A+ G   ++   
Sbjct: 173 LDLDYAEDSEAETDMNVVMNEAGGFIELQGTAEGHAFRRDELNAMTELAELGVAQLIETQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 RQA 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP++L T    R ++G+VL  +G+T VL T   +  +      Q    +T  Y     + 
Sbjct: 12  RPVRL-TRHYTRHAEGSVLVEFGDTRVLCTASVEERVPPWLRNQGRGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G        R  +     I I R+I R++R         E +V+   +V+Q D       
Sbjct: 71  GTRNDREAAR-GKQQGRTIEIQRLIGRALRAAVDLEALGERRVVLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+           +   P  G V    V    G  VL+    ED   +  +
Sbjct: 128 AAITGAYVALVDACNLLRKEGRIRRSPIFGQVAAVSVGIYQGTPVLDLDYAEDSEAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++     + L    E +    D +             +IE   +  + 
Sbjct: 188 NVVMNEAGGFIELQGTAEGHAFRRDELNAMTELAELGVAQLIETQRQALEA 238


>gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1]
          Length = 239

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R I       +   GS L   GDT+ I  V+     +      L G  + 
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS----AESGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  L  +TGE ++     G    R +   RL  R++   L  +     TL I  +
Sbjct: 59  WLTAEYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G++++L+D            G P+ + VA +++G+ +     + + 
Sbjct: 119 VIQTDGGTRTASITGATVSLIDALAVLKKRVALKGNPLKQIVAAVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  TD      +Q   +        +   L+ A++G   ++    
Sbjct: 175 DLDYLEDSAAESDLNVVMTDCRRFIEVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQR 234

Query: 537 KVLSE 541
             L+E
Sbjct: 235 AALAE 239



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     + 
Sbjct: 13  RPIRI-TRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLRRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G+       R  +     + I R+IDRS+R      K  +N   +  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQTDGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A+ +L            L G P +  V    V    G  VL+    ED   +  L
Sbjct: 129 ASITGATVSLIDALAVLKKRVALKGNPLKQIVAAVSVGIYQGVPVLDLDYLEDSAAESDL 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++  +  +  V+  A         +   +       + ++         
Sbjct: 189 NVVMTDCRRFI-EVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQRAALAE 239


>gi|254460324|ref|ZP_05073740.1| ribonuclease PH [Rhodobacterales bacterium HTCC2083]
 gi|206676913|gb|EDZ41400.1| ribonuclease PH [Rhodobacteraceae bacterium HTCC2083]
          Length = 237

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 24/232 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GRD   +RD+S +  + +   GS +   GDT  +   TL    + +    + G+  
Sbjct: 1   MRPSGRDLNQMRDVSIETNVTKHAEGSCMIKMGDTHVLCTATL----ENRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRSTTSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL                P+  PVA I+ G+         +
Sbjct: 117 DVIQADGGTRCASITGGWVALKLAVNKLIKAGEITSDPLISPVAAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            D+   ED    +D       +G +   QM  +    S + M   +  A++G
Sbjct: 173 LDLDYPEDSEAGVDGNFIMLANGQMIETQMSAEGSTYSRDQMNQLIDLAEKG 224



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET  + + ++G+ +   G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RDVSIETN-VTKHAEGSCMIKMGDTHVLCTATLENRVPPFIKGSGLGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  ----TSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL L            S  P   PV         GQ VL+   P   E 
Sbjct: 125 TRCASITGGWVALKLAVNKLIKAGEITSD-PLISPVAAISCGIYAGQPVLDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
               +  +      +   +  E +  S D +   I         +    
Sbjct: 184 GVDGNFIMLANGQMIETQMSAEGSTYSRDQMNQLIDLAEKGVSELAAMQ 232


>gi|166713272|ref|ZP_02244479.1| ribonuclease PH [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 241

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +    + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTTAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T  V +R      G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL            +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 TAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|332141636|ref|YP_004427374.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143438|ref|YP_004429176.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|226736881|sp|B4S201|RNPH_ALTMD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|327551658|gb|AEA98376.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553460|gb|AEB00179.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
          Length = 237

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R ++          GS L   G+T+ +   T+    +E     + G  +
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATV----EEGVPRFMKGQGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R +   RL  R++   L        T+ +  
Sbjct: 57  GWVTAEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALTYMRSKGIIKTNPLKHMIAALSVGIY----EGTPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED     D  +  T++G +  +Q   +    S   +   L+  K G   + +  
Sbjct: 173 ADLEYTEDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDELLKIGKHGLRELFDIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G T VL     +  +     GQ    +T  Y     A 
Sbjct: 12  RPVTI-TRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G      +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +       G+    P +  +    V    G  + +    ED   +  +
Sbjct: 128 ASITGACVALVDALTYMRSKGIIKTNPLKHMIAALSVGIYEGTPIADLEYTEDSEAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++ T   + +    E    S + + + +  G +  + + +       
Sbjct: 188 NIVMTETGKLIEVQGTAEGEPFSFEELDELLKIGKHGLRELFDIQKAALA 237


>gi|84622697|ref|YP_450069.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899009|ref|YP_199782.2| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578263|ref|YP_001915192.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|123522908|sp|Q2P6N2|RNPH_XANOM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736951|sp|B2SLL1|RNPH_XANOP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84366637|dbj|BAE67795.1| Ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522715|gb|ACD60660.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 241

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT  +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T  V +R      G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL            +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|323701932|ref|ZP_08113601.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
 gi|323533018|gb|EGB22888.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
          Length = 250

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R +       +   GS L   GDT+ I   T+    +++    L G  + 
Sbjct: 3   RVDGRTPGQIRPVKITANYNKYAEGSVLIEIGDTRVICTATV----EDRVPPFLKGLGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ +P ATG  +      G  S R +   RL  RA+  V+   A     + +  +
Sbjct: 59  WVTAEYSMIPRATGTRTTREAAKGKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  +++ G+ +A+           M   +P++  +A  ++G+V    +   + 
Sbjct: 119 VIQADGGTRTSSITGAYVAMILALNKLVEQGMLEKIPVNDFIAATSVGIV----NGTPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  T +G    +Q   +    S + M   L  A  G   ++    
Sbjct: 175 DLCYAEDSAAEVDMNVVLTGTGRFVEIQGTGEEATFSRDEMNQLLDLAAAGIKELIKVQQ 234

Query: 537 KV 538
           +V
Sbjct: 235 QV 236



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 88/229 (38%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   G+T V+ T   +  +           +T  Y     A 
Sbjct: 13  RPVKI-TANYNKYAEGSVLIEIGDTRVICTATVEDRVPPFLKGLGKGWVTAEYSMIPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
           G         + + +   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 72  G-TRTTREAAKGKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A++L+            +P    +    V  +NG  VL+    ED   +  +
Sbjct: 129 SSITGAYVAMILALNKLVEQGMLEKIPVNDFIAATSVGIVNGTPVLDLCYAEDSAAEVDM 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++GT    + ++    + +   D +   +       K +I+   ++
Sbjct: 189 NVVLTGT-GRFVEIQGTGEEATFSRDEMNQLLDLAAAGIKELIKVQQQV 236


>gi|74316495|ref|YP_314235.1| RNAse PH [Thiobacillus denitrificans ATCC 25259]
 gi|74055990|gb|AAZ96430.1| ribonuclease PH [Thiobacillus denitrificans ATCC 25259]
          Length = 244

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +       +   GS L   GDTQ +   ++     ++      G+   
Sbjct: 7   RPSGRAPDALRALRFTRRFTKHAEGSVLVAMGDTQVLCTASV----VDKVPPHKKGSGEG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V+        TL I  +
Sbjct: 63  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++CG+ +A+ DA             P+   VA +++G+ +       + 
Sbjct: 123 VLQADGGTRCASICGAYVAVADAVSWLVREGALVETPLVDSVAAVSVGVYQGQP----VL 178

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T S GI  +Q   +    S   +   L  A  G   I  E  
Sbjct: 179 DLDYLEDSACDTDMNVVMTGSGGIVEVQGTAEGVAFSRTTLEALLDLATAGIAQISAEQV 238

Query: 537 KVLSES 542
           + L + 
Sbjct: 239 RTLGQP 244



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 20/199 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           R L+  T R  + ++G+VL   G+T VL T  V D+    K G     +T  Y     + 
Sbjct: 17  RALRF-TRRFTKHAEGSVLVAMGDTQVLCTASVVDKVPPHKKGSGEGWVTAEYGMLPRST 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +    +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQADGGTRCAS 134

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
           +     + A  +S L         P    V    V    GQ VL+    ED      +++
Sbjct: 135 ICGAYVAVADAVSWLVREGALVETPLVDSVAAVSVGVYQGQPVLDLDYLEDSACDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL 195
            ++G+   ++ V+  A  +
Sbjct: 195 VMTGS-GGIVEVQGTAEGV 212


>gi|311896220|dbj|BAJ28628.1| putative ribonuclease PH [Kitasatospora setae KM-6054]
          Length = 241

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 26/225 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ +    +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERNWSKHAEGSVLVSYGDTKVLCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL+D              G PI+  V+ +++G++    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGII----DGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVM 519
           + D+  +ED     D  +  T  G    +Q   +      +++  
Sbjct: 175 MLDLRYEEDVRAETDMNIVCTSDGRFVEVQGTAEGAPFDRDLLNQ 219



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 28/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E    ++ ++G+VL +YG+T VL T      +   + G     +T  Y     A 
Sbjct: 13  RPVTIERNW-SKHAEGSVLVSYGDTKVLCTASVTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAAL--MLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL   +S           G P  G V    V  I+G  +L+ R +ED   + 
Sbjct: 129 AAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGIIDGVPMLDLRYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +++  + +    + V+  A       D++   +  G   C  + E   K  ++
Sbjct: 189 DMNIVCT-SDGRFVEVQGTAEGAPFDRDLLNQLLDLGSLGCAELDEIQRKALEV 241


>gi|134295025|ref|YP_001118760.1| ribonuclease PH [Burkholderia vietnamiensis G4]
 gi|166228274|sp|A4JCC2|RNPH_BURVG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134138182|gb|ABO53925.1| RNAse PH [Burkholderia vietnamiensis G4]
          Length = 246

 Score =  153 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASV----VERVPEFLRERGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTINIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     +   + 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLARSPITDHVAAISVGVY----EGAPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGRLVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V +R  +    +    LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVVERVPEFLRERGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-INIDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AAS---AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S   AA  L+  P    V    V    G  VL+    ED      +++ ++G     +
Sbjct: 145 AVSKLIAAGKLARSPITDHVAAISVGVYEGAPVLDLDYAEDSRCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +         +++   
Sbjct: 204 EVQGTAEGVPFSRAEMNALLDLAQAGIGRLVQLQK 238


>gi|296160047|ref|ZP_06842867.1| ribonuclease PH [Burkholderia sp. Ch1-1]
 gi|295889793|gb|EFG69591.1| ribonuclease PH [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 24/251 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTNNTQRPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  D              PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S + M   L  A  G   
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINT 232

Query: 531 ILNEMSKVLSE 541
           ++ +    L +
Sbjct: 233 LIAKQKAALEQ 243



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 22/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     S+      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRTLHIDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A +  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVYDGLPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            ++G     + ++  A  +  S D +   +    +    +I       +   +
Sbjct: 195 VMTG-AGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQKGE 246


>gi|289209634|ref|YP_003461700.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
 gi|288945265|gb|ADC72964.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
          Length = 242

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +       +   GS L   GDT+ +   T+ +R        L    R
Sbjct: 1   MRPSGRQADEMRPVRFTRHFTRHAEGSVLVEFGDTRVLCNATIESR----VPPWLKNKGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T +        G    R +   RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYSMLPRSTHDRMAREAARGKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   +A I++G+     +   +
Sbjct: 117 DVIQADGGTRTASISGAYVALRDAIRKAREQGMIRKDPLHGHLAAISVGIF----NGAPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D  +   +  G+  +Q   +      + +   L   ++G   I+   
Sbjct: 173 LDLDYDEDSQAETDLNLVMNEAGGVIEIQGTAEGHAFRRDELNQMLDLGEKGIQQIVEAQ 232

Query: 536 SKVLSE 541
              L++
Sbjct: 233 RAALAK 238



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 27/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP++  T    R ++G+VL  +G+T VL     +  +      +    +T  Y     + 
Sbjct: 12  RPVRF-TRHFTRHAEGSVLVEFGDTRVLCNATIESRVPPWLKNKGRGWVTAEYSMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  +     + I R+I RS+R +       E Q+I   +V+Q D       
Sbjct: 71  HDRMAREAAR-GKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL           M+   P  G +    V   NG  VL+   DED   +  L
Sbjct: 128 ASISGAYVALRDAIRKAREQGMIRKDPLHGHLAAISVGIFNGAPVLDLDYDEDSQAETDL 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI-SKLAK 223
           +L ++     V+ ++   E +    D +   +  G    + ++EA  + LAK
Sbjct: 188 NLVMN-EAGGVIEIQGTAEGHAFRRDELNQMLDLGEKGIQQIVEAQRAALAK 238


>gi|315121831|ref|YP_004062320.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495233|gb|ADR51832.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 250

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+ GR    +R+IS   G+ +   GS L   G+T  +   TL    +E+    L  T+ 
Sbjct: 3   MRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATL----EEKVPIWLRNTKN 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   +     G    R     RL  R++  ++  +A  P  + I  
Sbjct: 59  GWITAEYGMLPRSTGSRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPI-------------SKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL D    +                VA I+ G++       
Sbjct: 119 DVIQADGGTRTAAITGAWIALHDCLQHMEDRNSKFQLSQVLKGHVAAISCGILSGNP--- 175

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D++ +ED     D     TD+G I  +Q+  +    S++     L  AK     ++ 
Sbjct: 176 -IVDLNYEEDSSIDADANFVMTDAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIR 234

Query: 534 EMSKVLS 540
               V+S
Sbjct: 235 LQKDVIS 241



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 36/233 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +    G I++ ++G+ L  +GET +L T   +  +           +T  Y     + 
Sbjct: 14  REISFTRG-ISKHAEGSCLVKFGETHLLTTATLEEKVPIWLRNTKNGWITAEYGMLPRST 72

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      ++RE    R       I R+I RS+R +         Q+I   +V+Q D    
Sbjct: 73  G----SRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDCDVIQADGG-- 126

Query: 126 PHVVSMVAASAALM--------------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               ++  A  AL               LS +  +G V       ++G  +++   +ED 
Sbjct: 127 TRTAAITGAWIALHDCLQHMEDRNSKFQLSQV-LKGHVAAISCGILSGNPIVDLNYEEDS 185

Query: 172 G---SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
                 +  ++     ++ +++ A + +  +D     +    +    +I    
Sbjct: 186 SIDADANFVMT-DAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIRLQK 237


>gi|312795401|ref|YP_004028323.1| ribonuclease PH [Burkholderia rhizoxinica HKI 454]
 gi|312167176|emb|CBW74179.1| Ribonuclease PH (EC 2.7.7.56) [Burkholderia rhizoxinica HKI 454]
          Length = 243

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +RD+       +   GS L   GDT+ I   ++     E+  + L    R 
Sbjct: 7   RPSGRAADALRDVCITRHYTKHAEGSVLIECGDTKVICTASV----LEKVPEFLRDRGRG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  RA+  V       P TL I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D              PI   VA +++G+         + 
Sbjct: 123 VIQADGGTRCASITGAFIAAHDAVDTLLAHGKLTATPILDHVAAVSVGI----HGATPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    S + +   L  A+ G   ++    
Sbjct: 179 DLDYAEDSHCDTDMNVVMTGAGRFVEVQGTAEGEPFSRDELNALLGLAESGITRLIELQK 238

Query: 537 KV 538
           K 
Sbjct: 239 KA 240



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 23/217 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T      + +    +    LT  Y     A            
Sbjct: 27  KHAEGSVLIECGDTKVICTASVLEKVPEFLRDRGRGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R +F   K       +  +V+Q D        S+  A  A  
Sbjct: 86  GKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCDVIQADGG--TRCASITGAFIAAH 143

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                      L+  P    V    V       VL+    ED      +++ ++G    V
Sbjct: 144 DAVDTLLAHGKLTATPILDHVAAVSVGIHGATPVLDLDYAEDSHCDTDMNVVMTGAGRFV 203

Query: 186 -LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +    E    S D +   +    +    +IE   K 
Sbjct: 204 EVQGTAEGEPFSRDELNALLGLAESGITRLIELQKKA 240


>gi|289662153|ref|ZP_06483734.1| ribonuclease PH [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 240

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T  V +R      G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL  +         +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1]
          Length = 254

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + +G    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDVNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 VNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|159046003|ref|YP_001534797.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
 gi|189043761|sp|A8LPD1|RNPH_DINSH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157913763|gb|ABV95196.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
          Length = 237

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R +S + G  +   GS L   G+T+ +   ++    +E+    L  T  
Sbjct: 1   MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASV----EERVPPFLRNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  S R     RL  R++   + + A     + I  
Sbjct: 57  GWVTAEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       LM AG     P++  VA ++ GL         +
Sbjct: 117 DVIQADGGTRCASITGAWVALRLAVNKLMKAGDIITDPLTDHVAAVSCGLYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T S G+  +Q   +    S N +   +  A+ G   ++   
Sbjct: 173 LDLDYAEDSEAGTDANFVMTGSGGLIEVQGSAEGAPFSRNALNTLMDLAEVGVAELVAAQ 232

Query: 536 SKVLS 540
               S
Sbjct: 233 KAATS 237



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 74/202 (36%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +ETG   R ++G+ L + GET VL T   +  +        L   T  Y     A 
Sbjct: 12  RGVSIETG-FTRHAEGSCLISMGETRVLCTASVEERVPPFLRNTGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  ----HTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               S+  A  AL L+         +   P    V         GQ VL+    ED    
Sbjct: 125 TRCASITGAWVALRLAVNKLMKAGDIITDPLTDHVAAVSCGLYAGQPVLDLDYAEDSEAG 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
              +  ++G+   ++ V+  A 
Sbjct: 185 TDANFVMTGS-GGLIEVQGSAE 205


>gi|260599940|ref|YP_003212511.1| ribonuclease PH [Cronobacter turicensis z3032]
 gi|260219117|emb|CBA34472.1| Ribonuclease PH [Cronobacter turicensis z3032]
          Length = 240

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +
Sbjct: 3   MRPAGRSASEVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 58

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 59  GWITAEYGMLPRATHTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 119 DVIQADGGTRTASITGACVALADALNALVAAGKLKTNPLKGMVAAVSVGIVNGE----AV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 175 CDLEYVEDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHEELLDLLALARGGIESIVASQ 234

Query: 536 SKV 538
              
Sbjct: 235 KAA 237



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 18/199 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 14  RPVTL-TRHYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D  +    
Sbjct: 73  -HTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDCDVIQADGGTRTAS 131

Query: 129 V---------SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFV 178
           +         ++ A  AA  L   P +G V    V  +NG+ V +    ++     D+ V
Sbjct: 132 ITGACVALADALNALVAAGKLKTNPLKGMVAAVSVGIVNGEAVCDLEYVEDSAADTDMNV 191

Query: 179 SGTQDAVLMVELEANQLSE 197
             T+D  + +E++     E
Sbjct: 192 VMTEDGRM-IEVQGTAEGE 209


>gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202]
 gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202]
          Length = 254

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED     D  V  + +G    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYKEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+    ED      
Sbjct: 142 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYKEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
 gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
          Length = 254

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       G+   
Sbjct: 16  RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRKGSGLG 71

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S    R G    R     RL  R++  V+   A    T+ +  +
Sbjct: 72  WVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCD 131

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D I + 
Sbjct: 132 VLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----DGIPML 187

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED     D  V  + +G    +Q   +    + N++   L  A  G   +    S
Sbjct: 188 DLAYEEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQS 247

Query: 537 KV 538
           + 
Sbjct: 248 EA 249



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 26  RDVRIECGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 85  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 141

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+   +ED      
Sbjct: 142 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYEEDSRADTD 200

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 201 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 249


>gi|255094294|ref|ZP_05323772.1| ribonuclease PH [Clostridium difficile CIP 107932]
          Length = 378

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 121/318 (38%), Gaps = 31/318 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +   
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +        G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+ +             +PI+  V+ I++G+V    + I + 
Sbjct: 119 VIQADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHML 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD      +Q   +    S   + + L+  ++G   ++    
Sbjct: 175 DLCYEEDSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQR 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------VNIDDD 590
           + L E   ++         + I  +    +  +G  +     +    K      + I +D
Sbjct: 235 EALGEIADEILG-MDYGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKDVDLAGIEIVED 293

Query: 591 GTVKIASSSLAEIEAARE 608
           G     ++ +     A++
Sbjct: 294 GKTFEHNALIKARAIAKK 311



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 98/274 (35%), Gaps = 31/274 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +           +   Y     A 
Sbjct: 13  RPVKI-TRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I R+IR +       E    V  +V+Q D       
Sbjct: 72  QQRKIRDASR-GKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            S+  A  A+            +  +P    V    V  +NG ++L+   +ED +  +D+
Sbjct: 129 ASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKAQVDM 188

Query: 177 FVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
            +  T     + V+    +   S   +   +  G    K +I    +     A E + +D
Sbjct: 189 NIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEIADEILGMD 248

Query: 234 SKDFSKLE-------EEMSQMIKEDLRVSCFIPE 260
             +   +        EE+ +++K+       + +
Sbjct: 249 YGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKD 282


>gi|21244122|ref|NP_643704.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638175|sp|Q8PH63|RNPH_XANAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21109751|gb|AAM38240.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
          Length = 241

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLIKRGDIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T   +  +     G+    +T  Y     + 
Sbjct: 15  RPVRIER-SFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL  +         +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLIKRGDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|307329928|ref|ZP_07609081.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
 gi|306884419|gb|EFN15452.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
          Length = 243

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D                P++  V+ +++G+V      I 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIV----GGIP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    +   +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCETLAGI 234

Query: 535 MSKV 538
               
Sbjct: 235 QRAA 238



 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T      +   + G     +T  Y     + 
Sbjct: 13  RPVTIERGW-SKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTAEYAMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  + G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGGIPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
 gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
          Length = 250

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 24/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR +  +R IS  + + +   GS L   G+T+ +   ++    D +    L G+ + 
Sbjct: 7   RNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASV----DNKVPPFLRGSGQG 62

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R +   RL  R++   +        T+ +  +
Sbjct: 63  WVTAEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ LAL             A  P   PVA +++G V    D  IL+
Sbjct: 123 VLQADGGTRTASITGAFLALAGAVRSLIAGGRIAASPFRMPVAAVSIGKV----DGQILT 178

Query: 478 DISGDEDHLGHMDFKVAGTDSGI-TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +DF V G  +G+   +Q   + G  S + +   L   +     I     
Sbjct: 179 DLDYSEDSRAEVDFNVVGNGNGVFIELQGTGEGGTFSRSELNELLDCGENALAQITELQR 238

Query: 537 KVL 539
           K +
Sbjct: 239 KTM 241



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 80/217 (36%), Gaps = 25/217 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV-GKIPGGYLRR 80
           R ++G+ L  +GET VL T   D  +     G     +T  Y     A   +     ++ 
Sbjct: 27  RWAEGSCLVEWGETKVLCTASVDNKVPPFLRGSGQGWVTAEYAMLPRATSSRTVRESVK- 85

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             R +   + ISR+I RS+R         E  V    +V+Q D        S+  A  AL
Sbjct: 86  -GRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDCDVLQADGG--TRTASITGAFLAL 142

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVL 186
                       ++  PF  PV    +  ++GQ + +    ED +  +D  V G  + V 
Sbjct: 143 AGAVRSLIAGGRIAASPFRMPVAAVSIGKVDGQILTDLDYSEDSRAEVDFNVVGNGNGVF 202

Query: 187 MVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISK 220
           +      +    S   + + +  G N    + E   K
Sbjct: 203 IELQGTGEGGTFSRSELNELLDCGENALAQITELQRK 239


>gi|254515846|ref|ZP_05127906.1| ribonuclease PH [gamma proteobacterium NOR5-3]
 gi|219675568|gb|EED31934.1| ribonuclease PH [gamma proteobacterium NOR5-3]
          Length = 240

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +RDIS +        GS L   G+T+ I   ++    ++     L G   
Sbjct: 2   PRPSGRATDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASV----EDSVPRFLRGKNS 57

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G    R     RL  R++   +  +    +T+ +  
Sbjct: 58  GWITAEYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D           +  P+   VA +++G+ +       +
Sbjct: 118 DVIQADGGTRTASITGAFVALVDAINGLQRDKKISTDPLRHFVASVSVGVYQGE----AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G    +Q   +    S   +   L  A  G   ++   
Sbjct: 174 LDLDYIEDSKADTDLNVVMAEHGEFIEVQGTAEAAPFSRTELDQMLDLASGGISTLIECQ 233

Query: 536 SKV 538
            + 
Sbjct: 234 RQA 236



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 32/235 (13%)

Query: 14  RPLKLETGRIARQ----SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQER 66
           R + +E     RQ    ++G+VL ++G T V+ T   + S+     G++   +T  Y   
Sbjct: 13  RDISIE-----RQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITAEYGML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLES 124
             + G   G    R  +       I R+I RS+R      K  ++   +  +V+Q D   
Sbjct: 68  PRSTGSRMGREAAR-GKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQADGG- 125

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQG 172
                S+  A  AL+           +S  P    V    V    G+ VL+    ++ + 
Sbjct: 126 -TRTASITGAFVALVDAINGLQRDKKISTDPLRHFVASVSVGVYQGEAVLDLDYIEDSKA 184

Query: 173 SLDL-FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             DL  V       + V+  A     S   +   +         +IE   +    
Sbjct: 185 DTDLNVVMAEHGEFIEVQGTAEAAPFSRTELDQMLDLASGGISTLIECQRQALAA 239


>gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
 gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
          Length = 254

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+ + +R +      ++   GS L   GDT+ +   T+    +++      G  +
Sbjct: 1   MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATV----EDKVPPFAKGEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G  S R +   RL  RA+  V+   A    TL I  
Sbjct: 57  GWITAEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL  A            +P+   VA +++G+V   +    +
Sbjct: 117 DVIQADGGTRTAAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIVDGEE----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T S     +Q   +    S   +   L  A++G   ++   
Sbjct: 173 LDLNFEEDSKALVDMNVVMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQ 232

Query: 536 SKVLSE 541
            + L +
Sbjct: 233 KQALGD 238



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 94/235 (40%), Gaps = 26/235 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T  I + ++G+VL   G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 12  RTVKITTNYI-KHAEGSVLIEMGDTRVVCTATVEDKVPPFAKGEGKGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQ-VIINVMQHDLESSPHV 128
            +        + R +   + I R+I R++R +   K     T  +  +V+Q D       
Sbjct: 71  -ETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  +  AL L+            +P +  V    V  ++G+ +L+   +ED      +
Sbjct: 128 AAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIVDGEEILDLNFEEDSKALVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           ++ ++G+ +  + V+    + +   + +   +       + +IE   +     A+
Sbjct: 188 NVVMTGS-NRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQKQALGDIAR 241


>gi|194289073|ref|YP_002004980.1| ribonuclease ph [Cupriavidus taiwanensis LMG 19424]
 gi|226736900|sp|B3R3N0|RNPH_CUPTR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|193222908|emb|CAQ68913.1| RNase PH [Cupriavidus taiwanensis LMG 19424]
          Length = 239

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS      +   GS L   GDT+ +   ++      +      G+  
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASV----LAKVPPHKKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  RA+  V    A   YTL +  
Sbjct: 57  GWVTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA +++G+V    D + +
Sbjct: 117 DVLQADGGTRTAAITGAFVAAHDAVATMLRDGLIAASPIRDHVAAVSVGMV----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G   +Q   +    S   +    + A+ G   ++   
Sbjct: 173 LDLDYAEDSNCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQYQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 REA 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 23/191 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           R + L T    R ++G+VL  +G+T VL T  V  +    K G     +T  Y     A 
Sbjct: 12  RSISL-TRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + T     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 71  -HTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  A  A             ++  P    V    V  ++G  VL+    ED      +
Sbjct: 128 AAITGAFVAAHDAVATMLRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYAEDSNCDTDM 187

Query: 175 DLFVSGTQDAV 185
           ++ ++G+   V
Sbjct: 188 NVVMTGSGGFV 198


>gi|42524118|ref|NP_969498.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
 gi|61215946|sp|Q6MJR9|RNPH_BDEBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39576326|emb|CAE80491.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
          Length = 243

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 22/247 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R+I     + +   GS++   G T+ +   T     + +    L GT  
Sbjct: 1   MRADGRLFDQLRNIKITPNVSEYAEGSAIVEFGRTKVLCTATY----ESKAPSWLLGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP +T    R        R     RL  R++   +         + I  ++
Sbjct: 57  GWITAEYGMLPRSTHTRIRRDKSMTGGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCDV 116

Query: 430 TESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSD 478
             +DG +  A+V G  +AL               +P+   V+ I++GL     +  IL D
Sbjct: 117 LNADGGTRTASVTGGFVALALALKKLHAVSEIKTLPLINYVSAISVGL----HEGQILLD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           ++ DED     D     TD G    +Q   +    + + +   +  A++G   +    + 
Sbjct: 173 LNYDEDSAIGTDMNFVMTDKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELFIHQAS 232

Query: 538 VLSESRL 544
           V+ E   
Sbjct: 233 VMGEIYK 239



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 28/235 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T  ++  ++G+ +  +G T VL T  Y+        G     +T  Y     + 
Sbjct: 12  RNIKI-TPNVSEYAEGSAIVEFGRTKVLCTATYESKAPSWLLGTGAGWITAEYGMLPRS- 69

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                   R +S        ISR+I RS+R         E Q+I   +V+  D       
Sbjct: 70  --THTRIRRDKSMTGGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCDVLNADGG--TRT 125

Query: 129 VSMVAASAALML--------SGL---PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+     AL L        S +   P    V    V    GQ +L+   DED      +
Sbjct: 126 ASVTGGFVALALALKKLHAVSEIKTLPLINYVSAISVGLHEGQILLDLNYDEDSAIGTDM 185

Query: 175 DLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +  ++  +   + V+  A  +  + D +   +      C+ +    + +     K
Sbjct: 186 NFVMT-DKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELFIHQASVMGEIYK 239


>gi|34499302|ref|NP_903517.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|61215999|sp|Q7MBD4|RNPH_CHRVO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|34105153|gb|AAQ61509.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
          Length = 238

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R +       +   GS L   GDT+ I   ++    +E     L G  +
Sbjct: 1   MRPSQRSADAMRVVRLTRSYTKHAEGSVLVEFGDTKVICTASV----EETVPSFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   R     G  S R     RL  R++  V          + I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           +  P+   VA +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGAYVALADAIRGLIDAGKLSATPLRDQVAAVSVGVYKGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T SG    +Q   +    SE  M   L  A++G   +L   
Sbjct: 173 LDLDYLEDSDCETDMNVVMTGSGRFVEVQGTAEGEPFSEEEMAAMLGLARKGIAELLAHQ 232

Query: 536 SKVLS 540
            + L+
Sbjct: 233 RQALN 237



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 29/220 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T   + ++     G+    +T  Y     + G      +RRE
Sbjct: 22  KHAEGSVLVEFGDTKVICTASVEETVPSFLKGKGQGWVTAEYGMLPRSTG----SRMRRE 77

Query: 82  ---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASA 136
               + +     I R+I RS+R +       E Q++   +V+Q D        S+  A  
Sbjct: 78  SAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVIQADGG--TRTASITGAYV 135

Query: 137 ALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQ 182
           AL            LS  P    V    V    GQ VL+    ED   +  +++ ++G+ 
Sbjct: 136 ALADAIRGLIDAGKLSATPLRDQVAAVSVGVYKGQPVLDLDYLEDSDCETDMNVVMTGSG 195

Query: 183 DAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             V +    E    SE+ +   +         ++    + 
Sbjct: 196 RFVEVQGTAEGEPFSEEEMAAMLGLARKGIAELLAHQRQA 235


>gi|25028957|ref|NP_739011.1| ribonuclease PH [Corynebacterium efficiens YS-314]
 gi|259508022|ref|ZP_05750922.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
 gi|61216064|sp|Q8FMU8|RNPH_COREF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23494244|dbj|BAC19211.1| putative ribonuclease [Corynebacterium efficiens YS-314]
 gi|259164363|gb|EEW48917.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
          Length = 245

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++    +         +   
Sbjct: 9   RADGRAQDQMRTVKITRGFTTNPAGSVLIEFGNTRVMCTASV----ELGVPRFKRDSGEG 64

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E +R     G    R     RL  R++   +  +     T+ I  +
Sbjct: 65  WLTAEYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA           G P+  PVA +++GL+    D     
Sbjct: 125 VLQADGGTRTAAITGAYVALADAIRVLKEQGVVPGDPLLPPVAAVSVGLI----DGQPCL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  V  T+SG    +Q   +    +   +   L  A++G   +++   
Sbjct: 181 DLPYEEDVRADVDMNVVMTESGEFVEIQGTGEETTFTRAQLNEMLDIAEKGCRELVHAQK 240

Query: 537 KV 538
             
Sbjct: 241 AA 242



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R +K+  G       G+VL  +G T V+ T  V     +  +D     LT  Y     A 
Sbjct: 19  RTVKITRG-FTTNPAGSVLIEFGNTRVMCTASVELGVPRFKRDSGEGWLTAEYAMLPAAT 77

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESS 125
            +      RRE    +       ISR+I RS+R      +  +N   +  +V+Q D    
Sbjct: 78  AER----NRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQADGG-- 131

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
               ++  A  AL  +           G P   PV    V  I+GQ  L+   +ED +  
Sbjct: 132 TRTAAITGAYVALADAIRVLKEQGVVPGDPLLPPVAAVSVGLIDGQPCLDLPYEEDVRAD 191

Query: 174 LDLFVSGTQDA-VLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           +D+ V  T+    + ++    +   +   + + +      C+ ++ A  
Sbjct: 192 VDMNVVMTESGEFVEIQGTGEETTFTRAQLNEMLDIAEKGCRELVHAQK 240


>gi|238750796|ref|ZP_04612294.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
 gi|238710940|gb|EEQ03160.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
          Length = 238

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ VR ++      +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       +T+ +  
Sbjct: 57  GWITAEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+VK       L
Sbjct: 117 DVLQADGGTRTASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A+ G   I    
Sbjct: 173 CDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFLAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALEQ 238



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPLTL-TRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I RS+R         E  +    +V+Q D       
Sbjct: 71  -HSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL         SG     P +G V    V  + G+ + +    ED   +  +
Sbjct: 128 ASISGACVALADALNKLVASGKLKANPMKGLVAAVSVGIVKGEALCDLEYVEDSAAETDM 187

Query: 175 DLFV 178
           ++ +
Sbjct: 188 NVVM 191


>gi|296118694|ref|ZP_06837270.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968183|gb|EFG81432.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 242

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 100/247 (40%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R DGRD + +R +           GS L   G+T+ +   ++    ++       
Sbjct: 1   MTDFQRADGRDLDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV----EQGVPRFKK 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT +        G    R     RL  R++   +  +A    T+
Sbjct: 57  DSGEGWLTAEYAMLPSATHDRMPRESMKGKVKGRTHEISRLIGRSLRAAVDLSALGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
           ++  ++ ++DG +  A++ G+ +AL DA           G P+ +P+A +++G+V    +
Sbjct: 117 QLDCDVLQADGGTRTASITGAYVALADAIAVLKEQGVVPGEPLLQPIAAVSVGMV----E 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             +  D+  +ED    +D  V   +SG    +Q   + G    + +   L  A++G + +
Sbjct: 173 GNVCLDLPYEEDSRAEVDLNVVMQESGNFVEVQGTGENGLFGRDELNAMLDVAQKGCVEL 232

Query: 532 LNEMSKV 538
           +      
Sbjct: 233 IAAQRAA 239



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL  +G T V+ T   ++ +   K       LT  Y     A   ++P   ++   + 
Sbjct: 30  GSVLVEFGNTRVMCTASVEQGVPRFKKDSGEGWLTAEYAMLPSATHDRMPRESMK--GKV 87

Query: 85  TENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR+I RS+R          N  Q+  +V+Q D        S+  A  AL  + 
Sbjct: 88  KGRTHEISRLIGRSLRAAVDLSALGENTIQLDCDVLQADGG--TRTASITGAYVALADAI 145

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-LM 187
                     G P   P+    V  + G   L+   +ED   +  L++ +  + + V + 
Sbjct: 146 AVLKEQGVVPGEPLLQPIAAVSVGMVEGNVCLDLPYEEDSRAEVDLNVVMQESGNFVEVQ 205

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
              E      D +   +      C  +I A 
Sbjct: 206 GTGENGLFGRDELNAMLDVAQKGCVELIAAQ 236


>gi|255308380|ref|ZP_05352551.1| ribonuclease PH [Clostridium difficile ATCC 43255]
          Length = 449

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 121/318 (38%), Gaps = 31/318 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +   
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +        G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+ +             +PI+  V+ I++G+V    + I + 
Sbjct: 119 VIQADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHML 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD      +Q   +    S   + + L+  ++G   ++    
Sbjct: 175 DLCYEEDSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQR 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------VNIDDD 590
           + L E   ++         + I  +    +  +G  +     +    K      + I +D
Sbjct: 235 EALGEISDEILG-MDYGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKDVDLAGIEIVED 293

Query: 591 GTVKIASSSLAEIEAARE 608
           G     ++ +     A++
Sbjct: 294 GKTFEHNALIKARTIAKK 311



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 98/274 (35%), Gaps = 31/274 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +           +   Y     A 
Sbjct: 13  RPVKI-TRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I R+IR +       E    V  +V+Q D       
Sbjct: 72  QQRKIRDASR-GKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            S+  A  A+            +  +P    V    V  +NG ++L+   +ED +  +D+
Sbjct: 129 ASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKAQVDM 188

Query: 177 FVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
            +  T     + V+    +   S   +   +  G    K +I    +     + E + +D
Sbjct: 189 NIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEISDEILGMD 248

Query: 234 SKDFSKLE-------EEMSQMIKEDLRVSCFIPE 260
             +   +        EE+ +++K+       + +
Sbjct: 249 YGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKD 282


>gi|126700927|ref|YP_001089824.1| ribonuclease PH [Clostridium difficile 630]
 gi|115252364|emb|CAJ70205.1| Bifunctional enzyme, tRNA nucleotidyltransferase ;
           Nucleoside-triphosphatase [Clostridium difficile]
          Length = 449

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 121/318 (38%), Gaps = 31/318 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +   
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +        G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+ +             +PI+  V+ I++G+V    + I + 
Sbjct: 119 VIQADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHML 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD      +Q   +    S   + + L+  ++G   ++    
Sbjct: 175 DLCYEEDSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQR 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------VNIDDD 590
           + L E   ++         + I  +    +  +G  +     +    K      + I +D
Sbjct: 235 EALGEISDEILG-MDYGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKDVDLAGIEIVED 293

Query: 591 GTVKIASSSLAEIEAARE 608
           G     ++ +     A++
Sbjct: 294 GKTFEHNALIKARTIAKK 311



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 98/274 (35%), Gaps = 31/274 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +           +   Y     A 
Sbjct: 13  RPVKI-TRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I R+IR +       E    V  +V+Q D       
Sbjct: 72  QQRKIRDASR-GKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            S+  A  A+            +  +P    V    V  +NG ++L+   +ED +  +D+
Sbjct: 129 ASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKAQVDM 188

Query: 177 FVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
            +  T     + V+    +   S   +   +  G    K +I    +     + E + +D
Sbjct: 189 NIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEISDEILGMD 248

Query: 234 SKDFSKLE-------EEMSQMIKEDLRVSCFIPE 260
             +   +        EE+ +++K+       + +
Sbjct: 249 YGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKD 282


>gi|242237612|ref|YP_002985793.1| ribonuclease PH [Dickeya dadantii Ech703]
 gi|242129669|gb|ACS83971.1| ribonuclease PH [Dickeya dadantii Ech703]
          Length = 238

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++  R I+      +   G+ L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPTGRSAQQTRPITLTRHYTKHAEGAVLVEFGDTKVLCTATV----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +       YT+ +  
Sbjct: 57  GWITAEYGMLPRATHSRNAREAARGKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           A  P+   VA +++G+V        +
Sbjct: 117 DVLQADGGTRTASITGACVALADAIAGLVASGKLAKNPMKGMVAAVSVGIVNGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G +  +Q   +    S   ++  L  A+ G   I+   
Sbjct: 173 CDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEQLLELLALARGGIEDIIRAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 22/201 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++GAVL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 12  RPITL-TRHYTKHAEGAVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDL------ 122
                    R  +     + I R+I RS+R     +K  +    +  +V+Q D       
Sbjct: 71  HSRNAREAAR-GKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDCDVLQADGGTRTAS 129

Query: 123 -----ESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
                 +    ++ + AS  L  +  P +G V    V  +NG+ V +    ++     D+
Sbjct: 130 ITGACVALADAIAGLVASGKLAKN--PMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSE 197
            V  T+D  + +E++     E
Sbjct: 188 NVVMTEDGRM-IEVQGTAEGE 207


>gi|229918348|ref|YP_002886994.1| ribonuclease PH [Exiguobacterium sp. AT1b]
 gi|229469777|gb|ACQ71549.1| ribonuclease PH [Exiguobacterium sp. AT1b]
          Length = 249

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 25/252 (9%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           D R  + +R +     + +   GS L   GDT+ I   T+    +E+  + L G ++   
Sbjct: 3   DARRFDELRPVEIVPHVNKHAEGSVLISIGDTKVICTATV----EERVPNFLRGKKQGWI 58

Query: 375 MMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              Y  LP ATG+     S  G  S R +   RL  R++  V+        T+ +  ++ 
Sbjct: 59  NAEYAMLPRATGDRTVRESVRGKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVI 118

Query: 431 ESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G   AL+               PI + VA I++G   +     ++ D+
Sbjct: 119 QADGGTRTASITGGFCALVLAVDRLIRQGKLEDTPIKEGVAAISVGRTDE-----LVLDL 173

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  V  T SG    +Q   +    +   M   L  A+ G   +       
Sbjct: 174 DYLEDAAAEVDMNVVMTASGRFVEVQGTGEEATFTLQEMNEMLALAQHGIESLFKTAEAA 233

Query: 539 LSESRLQLGEFT 550
           L  S   +GE +
Sbjct: 234 LGASWWYVGERS 245



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 84/222 (37%), Gaps = 30/222 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL + G+T V+ T   +  + +   G+    +   Y     A G        R 
Sbjct: 21  KHAEGSVLISIGDTKVICTATVEERVPNFLRGKKQGWINAEYAMLPRATGDRTVRESVR- 79

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I RS+R +       E    V  +V+Q D        S+     AL+
Sbjct: 80  GKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVIQADGG--TRTASITGGFCALV 137

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
           L+             P +  V    V   + + VL+    ED   +  +++ ++ +    
Sbjct: 138 LAVDRLIRQGKLEDTPIKEGVAAISVGRTD-ELVLDLDYLEDAAAEVDMNVVMTAS-GRF 195

Query: 186 LMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           + V+    +   +   + + +       +  IE++ K A+  
Sbjct: 196 VEVQGTGEEATFTLQEMNEMLALA----QHGIESLFKTAEAA 233


>gi|255324313|ref|ZP_05365434.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298643|gb|EET77939.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
           SK141]
          Length = 242

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 93/247 (37%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + +  R DGR  + +R +           GS L   G+T+ +   ++    +        
Sbjct: 1   MTEFTRADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASV----EYGVPRFKR 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT +        G    R     RL  R++   +        T+
Sbjct: 57  DSGEGWLTAEYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDD 472
           ++  ++ ++DG +  A++ G+ +AL DA           G P+   +A +++G++    D
Sbjct: 117 QLDCDVLQADGGTRTASITGAYVALADAIAHLKAEGVVPGEPLLDSIAAVSVGII----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             I  D+  +ED    +D  V   +SG    +Q   + G      +   L  A++G   +
Sbjct: 173 GEICLDLPYEEDSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREDLNEMLDVAQKGCREL 232

Query: 532 LNEMSKV 538
           +      
Sbjct: 233 IAAQKAA 239



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV-GKIPGGYLRRESRP 84
           G+VL  +G T V+ T          K       LT  Y     A   ++P   ++   + 
Sbjct: 30  GSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTAEYAMLPSATHDRMPRESMK--GKV 87

Query: 85  TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 ISR++ RS+R      +  +N  Q+  +V+Q D        S+  A  AL  + 
Sbjct: 88  KGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQADGG--TRTASITGAYVALADAI 145

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                     G P    +    V  I+G+  L+   +ED   +  L++ +  + D V  +
Sbjct: 146 AHLKAEGVVPGEPLLDSIAAVSVGIIDGEICLDLPYEEDSRAEVDLNVVMQESGDFV-EI 204

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +          + + + +      C+ +I A  
Sbjct: 205 QGTGEHGLFGREDLNEMLDVAQKGCRELIAAQK 237


>gi|138896231|ref|YP_001126684.1| ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196250189|ref|ZP_03148883.1| ribonuclease PH [Geobacillus sp. G11MC16]
 gi|166228283|sp|A4IRI5|RNPH_GEOTN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134267744|gb|ABO67939.1| Ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196210373|gb|EDY05138.1| ribonuclease PH [Geobacillus sp. G11MC16]
          Length = 255

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 105/247 (42%), Gaps = 23/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR++  +R +  Q   ++   GS L   GDT+ I   T+    +++    + G  +
Sbjct: 1   MRTDGRNNRELRPVHIQPHYIKHAEGSVLIEIGDTRVICTATV----EDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYGMLPRATEQRNAREASKGKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+              +P+   +A  ++G+     +  ++
Sbjct: 117 DVIQADGGTRTASITGAYVALVLALSKLVAEGKLESLPVRDFLAATSVGI---DPEHGVI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T +G    +Q   +    S   +   L+ A+ G   ++   
Sbjct: 174 LDLNYSEDARAKVDMNVVMTGAGQFVEIQGTGEEASFSRAELEELLETAQLGIEQLITIQ 233

Query: 536 SKVLSES 542
            +VL E 
Sbjct: 234 RRVLGEQ 240



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 82/220 (37%), Gaps = 28/220 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G     +T  Y     A  +        +
Sbjct: 22  KHAEGSVLIEIGDTRVICTATVEDKVPPFMRGGGKGWITAEYGMLPRAT-EQRNAREASK 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R +       E    +  +V+Q D        S+  A  AL+
Sbjct: 81  GKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDCDVIQADGG--TRTASITGAYVALV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+    ED   +  +++ ++G   
Sbjct: 139 LALSKLVAEGKLESLPVRDFLAATSVG-IDPEHGVILDLNYSEDARAKVDMNVVMTGAGQ 197

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            V  ++    +   S   + + +       + +I    ++
Sbjct: 198 FV-EIQGTGEEASFSRAELEELLETAQLGIEQLITIQRRV 236


>gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1]
 gi|166228297|sp|A1TD14|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1]
          Length = 260

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 92/251 (36%), Gaps = 25/251 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R ++   G      GS L   G T+ +   ++     E       G+ 
Sbjct: 2   SRREDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASVT----EGVPRWRKGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT E S      G    R     RL  R++   +   A    T+ I 
Sbjct: 58  QGWLTAEYAMLPAATHERSGRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAVSVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I  D+   ED    +D  V  TD+G +  +Q   +      + +   L  A      +  
Sbjct: 174 IRVDLPYTEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFE 233

Query: 534 EMSKVLSESRL 544
                L     
Sbjct: 234 IQRAALELPYP 244



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 28/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G     + G+VL  +G+T V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPVTITRGFTTHPA-GSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
            +  G    +  R       ISR++ RS+R          N   +  +V+Q D       
Sbjct: 73  HERSGRESVK-GRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYTEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKL 221
           + V  T    L+      +       + D +LDA +   ++   +  A  +L
Sbjct: 190 MNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALEL 241


>gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313]
          Length = 263

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 24/254 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R +      ++   GS L   GDT+ I   T+    D++       T   
Sbjct: 3   RIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATV----DDKVPPFKKNTGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAP----SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   +         S R     RL  RA+  V+         + I  +
Sbjct: 59  WVTAEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +AL+DA            +P++  +A +++G+V    D + + 
Sbjct: 119 VIQADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIV----DGVEML 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T  G    +Q   +     +      L  A++G   ++    
Sbjct: 175 DLCYMEDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQK 234

Query: 537 KVLSESRLQLGEFT 550
             L +   ++G  T
Sbjct: 235 DALGQVASEVGRVT 248



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 88/238 (36%), Gaps = 30/238 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           RP+K+    I + ++G+VL   G+T V+ T   D  +       G+ +     +   R  
Sbjct: 13  RPVKITRNYI-KHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVTAEYSMLPRAT 71

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSP 126
           A  + P    +   + +     I R+I R++R + +       E  +  +V+Q D     
Sbjct: 72  AA-RNPRDISK--LKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQADGG--T 126

Query: 127 HVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
              S+     AL+           +  +P    +    V  ++G  +L+    ED     
Sbjct: 127 RTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIVDGVEMLDLCYMEDSNAAT 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            +++ ++ ++   + ++    QL   ++     + F       +IE         A E
Sbjct: 187 DMNVVMT-SKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQVASE 243


>gi|89895968|ref|YP_519455.1| hypothetical protein DSY3222 [Desulfitobacterium hafniense Y51]
 gi|89335416|dbj|BAE85011.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 247

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR++  +R +    G      GS L   G T+ I   T+    +E+      GT  
Sbjct: 2   KRFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATV----EEKVPLFKKGTGS 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G  + R +   RL  RA+  V+        T+ +  
Sbjct: 58  GWVTAEYSMLPRATQTRNHRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   +A +++G V    D + L
Sbjct: 118 DVIQADGGTRTASITGAYVALVDAVNHLLAKGLIKENPILDSLAAVSVGKV----DGMAL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T  G    +Q   +        +   L+ A++G   ++   
Sbjct: 174 LDLAYEEDSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQ 233

Query: 536 SKV 538
              
Sbjct: 234 KAA 236



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 26/223 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G+T V+ T   +  +   K G     +T  Y     A  +        + + T
Sbjct: 27  GSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTAEYSMLPRAT-QTRNHRESSKGKLT 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAAL----- 138
              + I R+I R++R +       E  +    +V+Q D        S+  A  AL     
Sbjct: 86  GRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQADGG--TRTASITGAYVALVDAVN 143

Query: 139 ------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                 ++   P    +    V  ++G  +L+   +ED   +  +++ ++G Q   + ++
Sbjct: 144 HLLAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEEDSKAEVDMNVVMTG-QGKFVEIQ 202

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPI 230
             A  +    + +   +       + ++    K A      P+
Sbjct: 203 GTAEDIPFGREELDQFLELAEKGIQELMGMQ-KAAAQVGTGPL 244


>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
          Length = 251

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 17/238 (7%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV-----TLGTRE 358
           R ++    +R DGR ++ +R I  ++G+     GS+   +G T+ +  V       G+R 
Sbjct: 5   RELLSKIGLRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRS 64

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             Q+               ++    +TGE  +     R+        R+A+   +     
Sbjct: 65  KAQH-------DSAVVNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELY 117

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               + +  E+  +DG    A V  ++LAL+DAG+P+ + V      L  +    + L D
Sbjct: 118 PWTQIDVYVEVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTASLANND---VPLLD 174

Query: 479 ISGDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +S  E+ +G     VA       I  M+M  +        ++    Q  +    IL+E
Sbjct: 175 VSHQEEIIGGPTLTVAALPMSGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDE 232



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 19/207 (9%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           DG+     G T VLA V     ++        D   +   +    ++ G+      ++  
Sbjct: 37  DGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAVVNCQFSMAVFSTGE-----RKKRP 91

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALML 140
           R       IS  + +++           TQ+   + V+  D    P    + AA+ AL+ 
Sbjct: 92  RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADGGIYP--ACVNAATLALID 149

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG----SLDLFVSGTQDAVLMVELEANQLS 196
           +G+P +  V        N    L     +++     +L +        ++++E+      
Sbjct: 150 AGIPLKEYVCACTASLANNDVPLLDVSHQEEIIGGPTLTVAALPMSGKIVLMEMSQRFHV 209

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAK 223
            D +   +      CK +   + +  K
Sbjct: 210 -DHLQKVLDKALQGCKDIKSILDEAVK 235


>gi|294679008|ref|YP_003579623.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
 gi|294477828|gb|ADE87216.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
          Length = 237

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R IS + G+ +   GS L   GDT  +   T+    +++    L G+  
Sbjct: 1   MRPSGRNLADIRSISIETGVTKHAEGSVLIKMGDTHVLCTATI----EDKAPSFLKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G  S R     RL  RA+   + ++A     + +  
Sbjct: 57  GWVTAEYGMLPRATNSRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL  A             PI   VA I+ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKSGLIVSDPIIDHVAAISCGIYAGQP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED    +D     T  G +  +QM  +    S   M   L  A+ G   ++   
Sbjct: 173 ADLDYAEDSEAGVDGNFILTGRGRLVEVQMTAEGSTFSREEMTKLLDLAEAGVAQLVAAQ 232

Query: 536 SKVLS 540
              ++
Sbjct: 233 KAAIA 237



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 30/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + +ETG + + ++G+VL   G+T VL T   +        G     +T  Y     A 
Sbjct: 12  RSISIETG-VTKHAEGSVLIKMGDTHVLCTATIEDKAPSFLKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 71  N----SRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               S+     AL L       SGL    P    V         GQ + +    ED    
Sbjct: 125 TRCASITGGWVALRLAVNKLLKSGLIVSDPIIDHVAAISCGIYAGQPIADLDYAEDSEAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              +  ++G    V + +  E +  S + +   +         ++ A      
Sbjct: 185 VDGNFILTGRGRLVEVQMTAEGSTFSREEMTKLLDLAEAGVAQLVAAQKAAIA 237


>gi|119512637|ref|ZP_01631712.1| Ribonuclease PH [Nodularia spumigena CCY9414]
 gi|119462708|gb|EAW43670.1| Ribonuclease PH [Nodularia spumigena CCY9414]
          Length = 247

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R IS   G  +   GS L   GDTQ +  V++     E     L+GT + 
Sbjct: 5   RPDGRQPYELRPISFHAGFTRFAPGSVLTKFGDTQILCTVSV----SEGVPKFLAGTGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T E         S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTSEYRMLPSSTQERQPRELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A + G  +AL                P+   VA I++GL++ G+ +    D+
Sbjct: 121 QADAGTRTAAITGGFVALAHAVGQLLHSGVLERSPLCGQVAAISVGLLQ-GEPY---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V    + GI  +Q   + G  S   +   L  A++G   +L    + 
Sbjct: 177 NYIEDVGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLLIAQREA 236

Query: 539 LS 540
           ++
Sbjct: 237 IA 238



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 40/237 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RP+    G   R + G+VL  +G+T +L TV     +     F        LT  Y+   
Sbjct: 15  RPISFHAG-FTRFAPGSVLTKFGDTQILCTVSVSEGVP---KFLAGTGKGWLTSEYRM-- 68

Query: 68  YAVGKIPGGYLRRESRP----TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHD 121
                +P     R+ R     +     I R+I RS+R    F    +    V  +V+Q D
Sbjct: 69  -----LPSSTQERQPRELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQAD 123

Query: 122 LESSPHVVSMVAASAALM-------LSGL----PFEGPVVGAQVDYINGQYVLNPRL-DE 169
                   ++     AL         SG+    P  G V    V  + G+  L+    ++
Sbjct: 124 AG--TRTAAITGGFVALAHAVGQLLHSGVLERSPLCGQVAAISVGLLQGEPYLDLNYIED 181

Query: 170 DQGSLDLFVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
              ++D  V   Q+  ++ ++  A +   S   +   + F     + ++ A  +   
Sbjct: 182 VGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLLIAQREAIA 238


>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870517|gb|EAT34742.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870766|gb|EAT34991.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
          Length = 245

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 13/246 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+ +R+DGR +  +R I  ++G+  +  GS+   +G+T+ +  V  G     Q   
Sbjct: 2   ELLSDEGLRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAV-YGPH---QAPA 57

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S  +       Y+    +TGE  R     R+        ++A+   +         + 
Sbjct: 58  KKSSHEEVIVNCQYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAIKTELYPKSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+  +DG +  A+V  ++LAL+DAG+ + + V      L       I L D+S  E+
Sbjct: 118 VYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGK----IPLMDVSNLEE 173

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G     VA   S   I  M+M  +      + +   L+ A +G   +   + + + E 
Sbjct: 174 MSGGPTLTVASLPSSGKIAFMEMSQR---FHLDHLPKVLETALQGCREVQKIIDQAVREH 230

Query: 543 RLQLGE 548
             QLG+
Sbjct: 231 VTQLGQ 236



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 16/207 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           Q DG+     G T VLA V         K   +   +   Y   T++ G+      +R  
Sbjct: 31  QPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVNCQYSMATFSTGE-----RKRRP 85

Query: 83  RPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R       ++  + +++          K++  V I V+  D  +     S+ AA+ AL+ 
Sbjct: 86  RGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLMADGGNY--CASVNAATLALID 143

Query: 141 SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVS--GTQDAVLMVELEANQLSE 197
           +G+  +  V            +++   L+E  G   L V+   +   +  +E+       
Sbjct: 144 AGICLKEYVCACTASLAGKIPLMDVSNLEEMSGGPTLTVASLPSSGKIAFMEMSQRFHL- 202

Query: 198 DVVLDAIIFGHNECKPVIEAISKLAKM 224
           D +   +      C+ V + I +  + 
Sbjct: 203 DHLPKVLETALQGCREVQKIIDQAVRE 229


>gi|61215895|sp|Q6A759|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 244

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + +  R+DGR  + +RD+  + G L +  GS L   G T  +   ++     E       
Sbjct: 1   MSETSRIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT----EGVPRWRK 56

Query: 368 GTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           G+        Y  LP AT E S    R G    R     RL  R++  V+   A    T+
Sbjct: 57  GSGLGWVTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A++ G+ +AL+DA             PI   V  I++G+V    D
Sbjct: 117 ILDCDVLQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVV----D 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            I + D++  ED     D  V  + +G    +Q   +    + N++   L  A  G   +
Sbjct: 173 GIPMLDLAYKEDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATL 232

Query: 532 LNEMSKV 538
               S+ 
Sbjct: 233 KQAQSEA 239



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++E G ++ Q++G+VL ++G T VL        +   + G     +T  Y+    A 
Sbjct: 16  RDVRIERGWLS-QAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTAEYEMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +  G   R+  +       ISR++ RS+R +       E  +I   +V+Q D       
Sbjct: 75  NERSGRESRK-GKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQADGG--TRT 131

Query: 129 VSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
            S+  A  AL            ++S  P  G V    V  ++G  +L+    ED      
Sbjct: 132 ASITGAYVALIDAVNWLRGRGGLVSE-PIIGSVQAISVGVVDGIPMLDLAYKEDSRADTD 190

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ +SG  D V +    E    + +++ + +      C  + +A S+ 
Sbjct: 191 MNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEA 239


>gi|161525573|ref|YP_001580585.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189349699|ref|YP_001945327.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|226736894|sp|A9AEQ7|RNPH_BURM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|160343002|gb|ABX16088.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189333721|dbj|BAG42791.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
          Length = 246

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFLRERGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ +  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D              PI   VA I++G+     +   + 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLLAAGKLERSPIVDHVAAISVGVY----EGTPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGTLVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T      + +    +    LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHLDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S  L    L   P    V    V    G  VL+    ED      +++ ++G     +
Sbjct: 145 AVSTLLAAGKLERSPIVDHVAAISVGVYEGTPVLDLDYAEDSRCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +    +    +++   
Sbjct: 204 EVQGTAEGVPFSRAEMNALLDLAQSGIGTLVQLQK 238


>gi|51491297|emb|CAH18709.1| hypothetical protein [Homo sapiens]
          Length = 246

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 110/216 (50%), Gaps = 8/216 (3%)

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D+ G MDFK+AGT+ GITA+Q D+K+ GI   I++ A+QQA   +  IL  M+K +S+ R
Sbjct: 1   DYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPR 60

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
               E  P VE + +P  +    +G GG  ++ +  +TG  ++  D+ T  + + + + +
Sbjct: 61  ASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAM 120

Query: 604 EAAREMIRSIT-----DVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERV 657
             AR+ I  I         E   +Y   + ++ D G  V         L+H +QL   ++
Sbjct: 121 HEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKI 180

Query: 658 AKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 181 KHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 216


>gi|217420445|ref|ZP_03451950.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238561030|ref|ZP_00442682.2| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|251766543|ref|ZP_02264154.2| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
 gi|254196137|ref|ZP_04902562.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|254207704|ref|ZP_04914054.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|121229702|gb|ABM52220.1| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|147751598|gb|EDK58665.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|169652881|gb|EDS85574.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|217395857|gb|EEC35874.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238525408|gb|EEP88836.1| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|243065369|gb|EES47555.1| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
          Length = 295

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++     E+  + L
Sbjct: 53  MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVA----ERVPEFL 108

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 109 RERGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 168

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 169 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF---- 224

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  V  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 225 GGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGE 284

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 285 LVRLQRAA 292



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++GAVL  +G+T V+ T      + +    +    LT  Y     A 
Sbjct: 69  RDVRI-TRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 127

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 128 -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 183

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+   DED      
Sbjct: 184 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTD 243

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G    V +    E    S   +   +         ++       + 
Sbjct: 244 MNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALEA 295


>gi|21232680|ref|NP_638597.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767292|ref|YP_242054.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|188990329|ref|YP_001902339.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. B100]
 gi|24638173|sp|Q8P5T5|RNPH_XANCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81306727|sp|Q4UY39|RNPH_XANC8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736950|sp|B0RP96|RNPH_XANCB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21114489|gb|AAM42521.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66572624|gb|AAY48034.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|167732089|emb|CAP50281.1| ribonuclease PH [Xanthomonas campestris pv. campestris]
          Length = 241

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +  + L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPNFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGVGELFELQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T  V +R      G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL  +         +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|83648974|ref|YP_437409.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
 gi|123530517|sp|Q2S8P0|RNPH_HAHCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83637017|gb|ABC32984.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
          Length = 238

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  +  RDI       +   GS L   GDT+ I   T+    +      L G  +
Sbjct: 1   MRPSGRQPDQTRDIKITKNYTKHAEGSVLVEFGDTKVICTATV----ENGVPRFLRGEDQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG  ++     G    R +   RL  R++   +        ++ I  
Sbjct: 57  GWVTAEYGMLPRATGTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A+ D              PI   VA I++G+     + + +
Sbjct: 117 DVIQADGGTRTASITGGFVAMADAINSLLAKGQLKNNPILHKVAAISVGVY----EGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D  V  TD  G   +Q   +    S   +   L  A +G   +    
Sbjct: 173 VDLDYDEDSKAETDMNVVMTDQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQ 232

Query: 536 SKV 538
            +V
Sbjct: 233 EEV 235



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 22/227 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T V+ T   +  +     G+D   +T  Y     A 
Sbjct: 12  RDIKI-TKNYTKHAEGSVLVEFGDTKVICTATVENGVPRFLRGEDQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G           +     + I R+I RS+R         +  +    +V+Q D  +    
Sbjct: 71  G-TRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDCDVIQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           ++    + A  ++ L         P    V    V    G  V++   DED   +  +++
Sbjct: 130 ITGGFVAMADAINSLLAKGQLKNNPILHKVAAISVGVYEGVPVVDLDYDEDSKAETDMNV 189

Query: 177 FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            ++  QD  + V+  A     S   +   +       + +  A  ++
Sbjct: 190 VMT-DQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQEEV 235


>gi|126734415|ref|ZP_01750162.1| ribonuclease PH [Roseobacter sp. CCS2]
 gi|126717281|gb|EBA14145.1| ribonuclease PH [Roseobacter sp. CCS2]
          Length = 235

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 22/230 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R++S + G+     GS L   G+T  +   T+    DE+    L  +  
Sbjct: 1   MRPSGRQTNEMREVSIETGVTMHAEGSCLIKCGNTHVLCTATI----DERVPPFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT    R       S R     RL  R++   + + A     + +  +
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAKNGQSGRTQEIQRLIGRSLRAGVDRVALSERQIVVDCD 116

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+    +    + 
Sbjct: 117 VIQADGGTRCASITGGWVALKLAVQKLMKAGDVISDPLIDPVAAISCGIYAGQE----VL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           D+   ED    +D     T   +  +QM  +    +   M   +  A++G
Sbjct: 173 DLDYPEDSEAGVDGNFVMTGGKMIEIQMSAEGSTFTRAQMDGLVDLAEKG 222



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 78/227 (34%), Gaps = 30/227 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG +   ++G+ L   G T VL T   D  +           +T  Y     A 
Sbjct: 12  REVSIETG-VTMHAEGSCLIKCGNTHVLCTATIDERVPPFLKNSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
                  +RRE+    +     I R+I RS+R    +   +E Q++   +V+Q D     
Sbjct: 71  N----TRMRREAKNGQSGRTQEIQRLIGRSLRAGVDRVALSERQIVVDCDVIQADGG--T 124

Query: 127 HVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
              S+     AL            ++S  P   PV         GQ VL+   P   E  
Sbjct: 125 RCASITGGWVALKLAVQKLMKAGDVISD-PLIDPVAAISCGIYAGQEVLDLDYPEDSEAG 183

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
              +  ++G +   + +  E +  +   +   +         +    
Sbjct: 184 VDGNFVMTGGKMIEIQMSAEGSTFTRAQMDGLVDLAEKGVGELTAIQ 230


>gi|83719437|ref|YP_442125.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|167580996|ref|ZP_02373870.1| ribonuclease PH [Burkholderia thailandensis TXDOH]
 gi|167619073|ref|ZP_02387704.1| ribonuclease PH [Burkholderia thailandensis Bt4]
 gi|257138313|ref|ZP_05586575.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|123537265|sp|Q2SY74|RNPH_BURTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83653262|gb|ABC37325.1| ribonuclease PH [Burkholderia thailandensis E264]
          Length = 243

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +RD+       +   GS L   G+T+ I   ++     E+  + L
Sbjct: 1   MTNSSPRPSGRRADQLRDVRITRHYTKHAEGSVLVEFGETKVICTASV----VERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RERGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGKIARSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  V  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 173 GGAPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRLQRAA 240



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 81/233 (34%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +GET V+ T  V +R  +    +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGETKVICTASVVERVPEFLRERGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+   DED      
Sbjct: 132 TASITGAFVAAHDAVTKLVAAGKIARSPITDYVAAISVGVFGGAPVLDLDYDEDSACDTD 191

Query: 174 LDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G     + V+  A  +  S   +   +         ++       + 
Sbjct: 192 MNVVMTG-AGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRLQRAALEA 243


>gi|294667389|ref|ZP_06732607.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292602830|gb|EFF46263.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 241

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDDGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T   +  +     G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL  +         +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047]
          Length = 238

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R++       +   GS L   GDT+ I   T  T         L G   
Sbjct: 1   MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAETG----VPHFLRGKGV 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G    R +   RL  R++   +        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              PI   +A +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGACVALVDAVNSLRSKGAIKADPIKHRIAAVSVGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +  TDS G   +Q   +    S   +   L+ A+ G  ++    
Sbjct: 173 LDLDYAEDSNAETDLNLIMTDSGGFVEVQGTAEQEPFSATELADMLKLAELGIANLSELQ 232

Query: 536 SKVLSE 541
            + L+E
Sbjct: 233 QQALAE 238



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T V+ T   +  +           +T  Y     + 
Sbjct: 12  REVKI-TRNYTKHAEGSVLVEFGDTKVICTATAETGVPHFLRGKGVGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G   G    R  +     + I R+I RS+R      K  +N   +  +V+Q D       
Sbjct: 71  GSRMGREAAR-GKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            +   P +  +    V   NG  VL+    ED   +  L
Sbjct: 128 ASITGACVALVDAVNSLRSKGAIKADPIKHRIAAVSVGIYNGTPVLDLDYAEDSNAETDL 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +L ++ +   V  V+  A Q   S   + D +         + E   +    
Sbjct: 188 NLIMTDSGGFV-EVQGTAEQEPFSATELADMLKLAELGIANLSELQQQALAE 238


>gi|226326904|ref|ZP_03802422.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
 gi|225204741|gb|EEG87095.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
          Length = 251

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 24/249 (9%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D  +R   R +  VR I+      +   GS L   GDT+ +   T+    ++     L G
Sbjct: 11  DNTMRPADRQANQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATV----EDGVPRFLKG 66

Query: 369 TQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             +      Y  LP AT   +      G  + R +   RL  R++   +   A   +T+ 
Sbjct: 67  QGQGWVTAEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTIT 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDF 473
           +  ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+V    D 
Sbjct: 127 VDCDVIQADGGTRTASISGACVALVDALNKMVEEGKLKKSPLKSMVAAVSVGIV----DG 182

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L D+   ED     D  V   D G +  +Q   +    S   ++  L  AK G   I 
Sbjct: 183 EPLCDLEYVEDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIF 242

Query: 533 NEMSKVLSE 541
               + L +
Sbjct: 243 EAQKEALKQ 251



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 34/238 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL     +  +     GQ    +T  Y     A 
Sbjct: 25  RPITI-TRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWVTAEYGMLPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                    R  + T   + I R+I RS+R         E    V  +V+Q D       
Sbjct: 84  NSRNAREAAR-GKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQADGG--TRT 140

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            S+  A  AL+           L   P +  V    V  ++G+ + +    ED       
Sbjct: 141 ASISGACVALVDALNKMVEEGKLKKSPLKSMVAAVSVGIVDGEPLCDLEYVEDSA----- 195

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNE-------CKPVIEAISKLAKMCAKE 228
            + T   V+M++ +   +      +   F H E        K  +E I +  K   K+
Sbjct: 196 -AETDMNVVMID-DGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251


>gi|254482749|ref|ZP_05095987.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
 gi|214037108|gb|EEB77777.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
          Length = 240

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  E +RDIS          GS L   G T+ I   ++    +E     L G    
Sbjct: 3   RPSGRTPEQLRDISITRNFTCHAEGSVLVSFGKTKVICTASV----EEGVPRFLRGKGSG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G    R +   RL  R++   +        T+ I  +
Sbjct: 59  WVTAEYGMLPRSTGSRMGREASRGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+DA             P+ + +A +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGALVALVDAINYLQRKKIINTDPLLEMMASVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   +S G   +Q   +    + + +   L  A  G L ++ +  
Sbjct: 175 DLDYPEDSAADTDMNVIMGESGGFIEVQGTAEGATFARDELNAMLDLASAGILELIEKQK 234

Query: 537 KVLSE 541
             L+E
Sbjct: 235 AALAE 239



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 78/222 (35%), Gaps = 31/222 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGYLR 79
           ++G+VL ++G+T V+ T     S+++G   F        +T  Y     + G   G    
Sbjct: 25  AEGSVLVSFGKTKVICTA----SVEEGVPRFLRGKGSGWVTAEYGMLPRSTGSRMGREAS 80

Query: 80  RESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           R  +     + I R+I RS+R      K  +N   +  +V+Q D        S+  A  A
Sbjct: 81  R-GKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINIDCDVIQADGG--TRTASITGALVA 137

Query: 138 LM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL-FVSGTQDA 184
           L+           ++  P    +    V    G  VL+    ++     D+  + G    
Sbjct: 138 LVDAINYLQRKKIINTDPLLEMMASVSVGIYQGVPVLDLDYPEDSAADTDMNVIMGESGG 197

Query: 185 VLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
            + V+  A   +   D +   +         +IE        
Sbjct: 198 FIEVQGTAEGATFARDELNAMLDLASAGILELIEKQKAALAE 239


>gi|237813382|ref|YP_002897833.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
 gi|237506567|gb|ACQ98885.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
          Length = 243

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RERGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 173 GGTPVLDLDYGEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRLQRAA 240



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 76/232 (32%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++GAVL  +G+T V+ T      + +    +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+    ED      
Sbjct: 132 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVFGGTPVLDLDYGEDSACDTD 191

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G    V +    E    S   +   +         ++       + 
Sbjct: 192 MNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALEA 243


>gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833]
 gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833]
          Length = 247

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 90/242 (37%), Gaps = 23/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ +   T+   E         G+   
Sbjct: 3   RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATV---EAGNVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP ATG  S      G    R     RL  RA+   +        ++ I  +
Sbjct: 60  WVTAEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA           G P+   V+ +++G+V        L 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVAWMRANEVCLGDPLVNSVSAVSVGIVGSEP----LL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED +   D  V  T +G    +Q   +      + +   L  A  G   +    +
Sbjct: 176 DLCYEEDVVAETDMNVVMTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQA 235

Query: 537 KV 538
           + 
Sbjct: 236 EA 237



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD----GQDFFPLTVNYQERTYA 69
           RP+ +    +A  ++G+VL  +G T VL     +         G     +T  Y     A
Sbjct: 13  RPVTITRNWLAH-AEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVTAEYAMLPRA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
            G         + +       ISR+I R++R         E  +I   +V+Q D      
Sbjct: 72  TG-TRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQADGG--TR 128

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  A  AL  +           G P    V    V  +  + +L+   +ED   +  
Sbjct: 129 TAAITGAFVALADAVAWMRANEVCLGDPLVNSVSAVSVGIVGSEPLLDLCYEEDVVAETD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G   A + V+  A       D +   +      C  +    ++ 
Sbjct: 189 MNVVMTG-AGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQAEA 237


>gi|171057396|ref|YP_001789745.1| ribonuclease PH [Leptothrix cholodnii SP-6]
 gi|170774841|gb|ACB32980.1| ribonuclease PH [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R  GR ++ +R +       +   GS L   GDTQ +   ++    +E+      G+ 
Sbjct: 3   STRPLGRAADALRPVRITRSYTKHAEGSVLIEFGDTQVLCTASV----EEKVPPHKKGSG 58

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G  S R     RL  R++  V    A    ++ I 
Sbjct: 59  EGWVTAEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRCVFDLAALGERSILID 118

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A  D              PI   VA +++G++    D + 
Sbjct: 119 CDVLQADGGTRTASITGAFVAAHDAVQGLIAQGKLKRSPIRDFVAAVSVGIL----DGVA 174

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+   ED     D  +  T   G   +Q   +    S   M   L     G   ++  
Sbjct: 175 LLDLEYVEDSACDTDMNIVMTGAGGFVEVQGTAEGVAFSRAEMDQLLALGSAGIAELVAA 234

Query: 535 MSKV 538
               
Sbjct: 235 QKAA 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T    + ++G+VL  +G+T VL T   +  +     G     +T  Y     A 
Sbjct: 15  RPVRI-TRSYTKHAEGSVLIEFGDTQVLCTASVEEKVPPHKKGSGEGWVTAEYGMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                     + + +     I R+I RS+R +F      E    +  +V+Q D       
Sbjct: 74  -HTRSAREAAKGKQSGRTQEIQRLIGRSLRCVFDLAALGERSILIDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A             L   P    V    V  ++G  +L+    ED      +
Sbjct: 131 ASITGAFVAAHDAVQGLIAQGKLKRSPIRDFVAAVSVGILDGVALLDLEYVEDSACDTDM 190

Query: 175 DLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++G     + V+  A  +  S   +   +  G      ++ A  
Sbjct: 191 NIVMTG-AGGFVEVQGTAEGVAFSRAEMDQLLALGSAGIAELVAAQK 236


>gi|167570847|ref|ZP_02363721.1| ribonuclease PH [Burkholderia oklahomensis C6786]
          Length = 243

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR +  +RD+       +   GS L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSPRPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVSTGKIPRSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  V  T S G   +Q   +    S   M   L  A+ G   
Sbjct: 173 GGAPVLDLDYDEDSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRVQRAA 240



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R +++ T R  + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A 
Sbjct: 17  RDVRI-TRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRT-LHLDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             +   P    V    V    G  VL+   DED      
Sbjct: 132 TASITGAFVAAHDAVTKLVSTGKIPRSPITDYVAAISVGVFGGAPVLDLDYDEDSACDTD 191

Query: 174 LDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G+   V  V+  A  +  S   +   +         ++       + 
Sbjct: 192 MNVVMTGSGGFV-EVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALEA 243


>gi|300311449|ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
 gi|124483528|emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae]
 gi|300074234|gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 90/244 (36%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R  GR  E +R++       +   GS L   GDT+ +   ++    +E+    L G  
Sbjct: 4   SHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASI----EEKVPGFLKGKG 59

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP +T          G  S R     RL  RA+       A    TL++ 
Sbjct: 60  QGWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLD 119

Query: 427 SEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +A  D             +P+   VA I++G+       + 
Sbjct: 120 CDVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVF----KGVP 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  TD+G    +Q   +        +   L  A++G   +   
Sbjct: 176 VLDLDYPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGL 235

Query: 535 MSKV 538
             + 
Sbjct: 236 QRQA 239



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 19/183 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R ++L T +  + ++G+VL  +G+T VL T   +  +     G+    LT  Y     + 
Sbjct: 16  REVRL-TRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTAEYGMLPRST 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                     + + +     I R+I R++R  F      E   Q+  +V+Q D  +    
Sbjct: 75  -HTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQADGGTRTAA 133

Query: 129 V--SMVAASAALM-------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDL 176
           +  +MVAA  A         +  +P +  V    V    G  VL+   P   +    +++
Sbjct: 134 ITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDSDCDTDMNV 193

Query: 177 FVS 179
            ++
Sbjct: 194 VMT 196


>gi|197117592|ref|YP_002138019.1| ribonuclease PH [Geobacter bemidjiensis Bem]
 gi|197086952|gb|ACH38223.1| ribonuclease PH [Geobacter bemidjiensis Bem]
          Length = 239

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R++      L+   GS L   GDT+ I   T+    + +    L G   
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATV----EARVPSFLKGKGS 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R     RL  R++  V+        ++ I  
Sbjct: 58  GWVTAEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+ + VA +++G+V    D +  
Sbjct: 118 DVIQADGGTRTASITGAYVALADALQNLVNAGELEKSPLREAVAAVSVGIV----DGVPF 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T S     +Q   +    + + M    + A  G   +    
Sbjct: 174 LDLDYPEDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRRHAMLGLSRLFEIQ 233

Query: 536 SKV 538
            + 
Sbjct: 234 QEA 236



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T V+     +  +     G+    +T  Y     A 
Sbjct: 13  REVKI-TRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVTAEYCMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + + +     I R+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  -HTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL            L   P    V    V  ++G   L+   P     +  +
Sbjct: 129 ASITGAYVALADALQNLVNAGELEKSPLREAVAAVSVGIVDGVPFLDLDYPEDSTAEVDM 188

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  ++ +   V +    EA   + D +             + E   + 
Sbjct: 189 NFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRRHAMLGLSRLFEIQQEA 236


>gi|257875805|ref|ZP_05655458.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
 gi|257809971|gb|EEV38791.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
          Length = 210

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 22/203 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +  Q  + +   GS +   GDT  I   T+    +E+    L  T +
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATI----EERVPPFLRDTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL                PI + +A I++G++ DG     +
Sbjct: 117 DVVQADGGTRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
           +D+   ED    +D  +  T+SG
Sbjct: 174 TDLDYQEDSSAAVDMNLVMTESG 196



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 31/206 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K++T    +  +G+V+ ++G+T V+ +   +  +           +T  Y     A 
Sbjct: 12  RPVKIQTNVY-KHPEGSVVISFGDTTVICSATIEERVPPFLRDTGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  N----TRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG- 172
               S+  A  AL            L+  P +  +    V    +G  V +    ED   
Sbjct: 125 TRTASITGAFVALRLAIDTLLRDKALTEDPIKEHLAAISVGILPDGTCVTDLDYQEDSSA 184

Query: 173 --SLDLFVSGTQDAVLMVELEANQLS 196
              ++L ++ +    + ++    + +
Sbjct: 185 AVDMNLVMTES-GRFVELQGTGEEAT 209


>gi|295691344|ref|YP_003595037.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
 gi|295433247|gb|ADG12419.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
          Length = 238

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+ +   GS L   G T+ +V  T+    +E     L    +
Sbjct: 1   MRPSERAPDQMRAVTLETGVNRYAEGSCLISFGHTKVLVTATV----EESLPGWLRNKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHSRGRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A       L+D GV    PI   VA ++ G+  D      +
Sbjct: 117 DVVQADGGTRTAAITGAWVALRLATKYLLDEGVLKTDPIVGQVAAVSCGVFNDTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D     T++G I  +Q   +  G S          A++G   +    
Sbjct: 173 LDLDYEEDSSAEADSNFVLTNAGDIVEIQATGEKRGFSRAEFEALFGLAEKGIGELFTLQ 232

Query: 536 SKV 538
              
Sbjct: 233 RAA 235



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 34/204 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-----DGQDFFPLTVNYQERTY 68
           R + LETG + R ++G+ L ++G T VL T   + SL       GQ +  +T  Y     
Sbjct: 12  RAVTLETG-VNRYAEGSCLISFGHTKVLVTATVEESLPGWLRNKGQGW--VTAEYGMLPR 68

Query: 69  AVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLE 123
           A         RRE    + +     I R+I RS+R +       E Q+    +V+Q D  
Sbjct: 69  AT----HSRGRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQADGG 124

Query: 124 SSPHVVSMVAASAALMLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                 ++  A  AL L+             P  G V        N   VL+   +ED  
Sbjct: 125 --TRTAAITGAWVALRLATKYLLDEGVLKTDPIVGQVAAVSCGVFNDTPVLDLDYEEDSS 182

Query: 171 -QGSLDLFVSGTQDAVLMVELEAN 193
            +   +  ++   D ++ ++    
Sbjct: 183 AEADSNFVLTNAGD-IVEIQATGE 205


>gi|253701667|ref|YP_003022856.1| ribonuclease PH [Geobacter sp. M21]
 gi|251776517|gb|ACT19098.1| ribonuclease PH [Geobacter sp. M21]
          Length = 239

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR +  +R++      L+   GS L   GDT+ I   T+    + +    L G   
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATV----EARVPSFLKGKGS 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R     RL  R++  V+        ++ I  
Sbjct: 58  GWVTAEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+ + VA +++G+V    D +  
Sbjct: 118 DVIQADGGTRTASITGAYVALADALQNLVKAGDLEKSPLREAVAAVSVGIV----DGVPF 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T S     +Q   +    + + M      A  G   +    
Sbjct: 174 LDLDYPEDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRSHAMLGLSRLFEIQ 233

Query: 536 SKV 538
            + 
Sbjct: 234 QEA 236



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T V+     +  +     G+    +T  Y     A 
Sbjct: 13  REVKI-TRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVTAEYCMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + + +     I R+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  -HTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL            L   P    V    V  ++G   L+   P     +  +
Sbjct: 129 ASITGAYVALADALQNLVKAGDLEKSPLREAVAAVSVGIVDGVPFLDLDYPEDSTAEVDM 188

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  ++ +   V +    EA   + D +             + E   + 
Sbjct: 189 NFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRSHAMLGLSRLFEIQQEA 236


>gi|76580232|gb|ABA49707.1| ribonuclease PH [Burkholderia pseudomallei 1710b]
          Length = 622

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R  GR ++ +RD+       +   G+ L   GDT+ I   ++     E+  + L
Sbjct: 380 MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVA----ERVPEFL 435

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 436 RERGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT 495

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  D           A  PI+  VA I++G+     
Sbjct: 496 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF---- 551

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  V  T   G   +Q   +    S   M   L  A+ G   
Sbjct: 552 GGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGE 611

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 612 LVRLQRAA 619



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++GAVL  +G+T V+ T      + +    +    LT  Y     A 
Sbjct: 396 RDVRI-TRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 454

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 455 -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 510

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+   DED      
Sbjct: 511 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTD 570

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G    V +    E    S   +   +         ++       + 
Sbjct: 571 MNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALEA 622


>gi|294627116|ref|ZP_06705704.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325918115|ref|ZP_08180270.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325922286|ref|ZP_08184067.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
 gi|292598549|gb|EFF42698.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325535661|gb|EGD07502.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325547239|gb|EGD18312.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
          Length = 241

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T   +  +     G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL  +         +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLLKRGDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|161551792|ref|YP_148519.2| ribonuclease PH [Geobacillus kaustophilus HTA426]
 gi|61215778|sp|Q5KWI5|RNPH_GEOKA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 256

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATV----EEKVPSFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+              +PI   +A  ++G+     +  ++
Sbjct: 117 DVIQADGGTRTASITGAYVALVLALAKLVEEGRLEALPIRDFLAATSVGI---DPEHGVI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T +G    +Q   +    S   +   L+ A+ G   ++   
Sbjct: 174 LDLDYNEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQ 233

Query: 536 SKVLSE 541
            + L E
Sbjct: 234 RRALGE 239



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G     +T  Y     A  +       + 
Sbjct: 22  KHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWITAEYGMLPRATEQRNVREASK- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R +       E    +  +V+Q D        S+  A  AL+
Sbjct: 81  GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQADGG--TRTASITGAYVALV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+   +ED   +  +++ ++G   
Sbjct: 139 LALAKLVEEGRLEALPIRDFLAATSVG-IDPEHGVILDLDYNEDARAKVDMNVVMTGAGQ 197

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS----KLAKMCAKEPIVIDSK 235
            V  ++    +   S   + + +       + +I        + A    ++    +  
Sbjct: 198 FV-EIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALGEWAARIGEKKEAAEED 254


>gi|320655608|gb|EFX23536.1| ribonuclease PH [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 236

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 26/243 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  VR ++      +   GS L   GDT+ +   ++    +E     L G   
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQG- 55

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G    R +   RL  RA+   +   A   +T+ +  
Sbjct: 56  -WITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 114

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   VA +++G+V        +
Sbjct: 115 DVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGE----AV 170

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+   
Sbjct: 171 CDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQ 230

Query: 536 SKV 538
              
Sbjct: 231 KAA 233



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 28/200 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-----LTVNYQERTY 68
           RP+ L T    + ++G+VL  +G+T VL T     S+++G   F      +T  Y     
Sbjct: 12  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTA----SIEEGVPRFLKGQGWITAEYGMLPR 66

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
           +           + +     + I R+I R++R         E  +    +V+Q D     
Sbjct: 67  ST-HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--T 123

Query: 127 HVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSL 174
              S+  A  AL            L   P +G V    V  +NG+ V +    ++     
Sbjct: 124 RTASITGACVALADALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAET 183

Query: 175 DLFVSGTQDA-VLMVELEAN 193
           D+ V  T+D  ++ V+  A 
Sbjct: 184 DMNVVMTEDGRIIEVQGTAE 203


>gi|255102475|ref|ZP_05331452.1| ribonuclease PH [Clostridium difficile QCD-63q42]
          Length = 449

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 121/318 (38%), Gaps = 31/318 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +   
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +        G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+ +             +PI+  V+ I++G+V    + I + 
Sbjct: 119 VIQADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHML 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD      +Q   +    S   + + L+  ++G   ++    
Sbjct: 175 DLCYEEDSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQR 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK------VNIDDD 590
           + L E   ++         + I  +    +  +G  +     +    K      + I +D
Sbjct: 235 EALGEIADEILG-MDYGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKDVDLAGIEIVED 293

Query: 591 GTVKIASSSLAEIEAARE 608
           G     ++ +     A++
Sbjct: 294 GKTFEHNALIKARTIAKK 311



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 98/274 (35%), Gaps = 31/274 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +           +   Y     A 
Sbjct: 13  RPVKI-TRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I R+IR +       E    V  +V+Q D       
Sbjct: 72  QQRKIRDASR-GKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            S+  A  A+            +  +P    V    V  +NG ++L+   +ED +  +D+
Sbjct: 129 ASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKAQVDM 188

Query: 177 FVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
            +  T     + V+    +   S   +   +  G    K +I    +     A E + +D
Sbjct: 189 NIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEIADEILGMD 248

Query: 234 SKDFSKLE-------EEMSQMIKEDLRVSCFIPE 260
             +   +        EE+ +++K+       + +
Sbjct: 249 YGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKD 282


>gi|172039437|ref|YP_001805938.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
 gi|254808585|sp|B1WUL8|RNPH_CYAA5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171700891|gb|ACB53872.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
          Length = 240

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 22/244 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++ ++   + + GS L   G+T+ +   ++    +E     L G+ + 
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVLAQCGETKVLCTASI----EEYVPRFLLGSGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E  R      S R     RL  R++   +        ++ I  ++ 
Sbjct: 61  WLTAEYRMLPSATQERQRRELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A             P+  PVA I++GL+ +G+ F    D+
Sbjct: 121 QADAGTRTTSITGGYVALALALNKLIKKGELIQSPLRFPVAAISVGLI-EGEAF---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V  T +  +  +Q   +    + + +   L  A+ G   +++  ++ 
Sbjct: 177 NYPEDSKADIDFNVVMTGNLDLIEVQGTAEENSFTRSQLNDILDLAELGIKELVSLQNQA 236

Query: 539 LSES 542
           LS++
Sbjct: 237 LSQA 240



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  E     R S G+VLA  GET VL T   +  +     G     LT  Y+    A 
Sbjct: 15  RPVNFELN-FTRFSAGSVLAQCGETKVLCTASIEEYVPRFLLGSGQGWLTAEYRMLPSAT 73

Query: 71  GKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
            +      RRE  + +     I R+I RS+R         E    +  +V+Q D  +   
Sbjct: 74  QE----RQRRELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQADAGTRTT 129

Query: 128 VVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLD 175
            ++    + AL L+ L         P   PV    V  I G+  L+    ED       +
Sbjct: 130 SITGGYVALALALNKLIKKGELIQSPLRFPVAAISVGLIEGEAFLDLNYPEDSKADIDFN 189

Query: 176 LFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           + ++G  D +  V+  A +   +   + D +       K ++   ++     
Sbjct: 190 VVMTGNLDLI-EVQGTAEENSFTRSQLNDILDLAELGIKELVSLQNQALSQA 240


>gi|309792378|ref|ZP_07686846.1| ribonuclease PH [Oscillochloris trichoides DG6]
 gi|308225599|gb|EFO79359.1| ribonuclease PH [Oscillochloris trichoides DG6]
          Length = 240

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR    +R I   V       GS+L   G+T+ +   +L      Q    L G QR 
Sbjct: 7   RQSGRLPTELRSIEILVNAAPYAEGSALISCGNTRVLCAASLEP----QVPGWLRGQQRG 62

Query: 373 DFMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y+ LP +T   +R     PS R     RL  R++   +   A     + +  ++ 
Sbjct: 63  WVTAEYSLLPRSTHTRTRRERSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVL 122

Query: 431 ESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A + G  +AL           + A  PI   VA I++G+V    +  +L D+
Sbjct: 123 QADGGTRTAAITGGYVALALALRKLHAEGLIATNPIRYAVAAISVGVV----EGQMLLDL 178

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  +  T SG    +Q   +   I    +   L  A +G   ++     V
Sbjct: 179 DYAEDSSADLDCNIVQTASGAFVEVQGTAEGMPIDRAQLDALLDLASQGIARLITIQQAV 238



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 27/217 (12%)

Query: 24  ARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           A  ++G+ L + G T VL     +  +     GQ    +T  Y     +         R 
Sbjct: 26  APYAEGSALISCGNTRVLCAASLEPQVPGWLRGQQRGWVTAEYSLLPRS---THTRTRRE 82

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL 138
            S P+     I R+I RS+R         E    V  +V+Q D        ++     AL
Sbjct: 83  RSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVLQADGG--TRTAAITGGYVAL 140

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLD--LFVSGTQDA 184
                       ++  P    V    V  + GQ +L+    ED    LD  +  + +  A
Sbjct: 141 ALALRKLHAEGLIATNPIRYAVAAISVGVVEGQMLLDLDYAEDSSADLDCNIVQTAS-GA 199

Query: 185 VLMVELEANQLSED--VVLDAIIFGHNECKPVIEAIS 219
            + V+  A  +  D   +   +         +I    
Sbjct: 200 FVEVQGTAEGMPIDRAQLDALLDLASQGIARLITIQQ 236


>gi|292490867|ref|YP_003526306.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
 gi|291579462|gb|ADE13919.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
          Length = 239

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I       +   GS L   GDT+ I   ++    +++    L G  +
Sbjct: 1   MRPSGRAPDELRPIRLTRHYTKYAEGSVLVEFGDTRVICTASV----EDRVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++  ++  +A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTNIRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D           A  PI   VA +++G+     +   +
Sbjct: 117 DVIQADGGTRTASITGAYVALVDAVGSLLKKRVIAHSPIHGQVASVSVGIC----EGRPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   +  G   +Q   +      N +   L+ AK G   +L + 
Sbjct: 173 LDLDYIEDSTAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLELAKSGIGTLLAKQ 232

Query: 536 SKVLSE 541
           ++ L++
Sbjct: 233 TEALAK 238



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 84/220 (38%), Gaps = 27/220 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP++L T    + ++G+VL  +G+T V+ T  V DR  +   G+    +T  Y     + 
Sbjct: 12  RPIRL-TRHYTKYAEGSVLVEFGDTRVICTASVEDRVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
             I  G    + R     + I R+I RS+R +       E  V    +V+Q D       
Sbjct: 71  N-IRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF 177
            S+  A  AL           +++  P  G V    V    G+ VL+    ED       
Sbjct: 128 ASITGAYVALVDAVGSLLKKRVIAHSPIHGQVASVSVGICEGRPVLDLDYIEDS------ 181

Query: 178 VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
            +   D  +++      +      +   F  NE + ++E 
Sbjct: 182 -TAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLEL 220


>gi|167563697|ref|ZP_02356613.1| ribonuclease PH [Burkholderia oklahomensis EO147]
          Length = 243

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR +  +RD+       +   GS L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSPRPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V    A  P T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           L +  ++ ++DG +  A++ G+ +A  DA             PI+  VA I++G+     
Sbjct: 117 LHLDCDVIQADGGTRTASITGAFVAAHDAVTKLVATGKIPRSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+  DED     D  V  T S G   +Q   +    S   M   L  A+ G   
Sbjct: 173 GGAPVLDLDYDEDSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGE 232

Query: 531 ILNEMSKV 538
           ++      
Sbjct: 233 LVRVQRAA 240



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R +++ T R  + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A 
Sbjct: 17  RDVRI-TRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRT-LHLDCDVIQADGG--TR 131

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             +   P    V    V    G  VL+   DED      
Sbjct: 132 TASITGAFVAAHDAVTKLVATGKIPRSPITDYVAAISVGVFGGAPVLDLDYDEDSACDTD 191

Query: 174 LDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G+   V  V+  A  +  S   +   +         ++       + 
Sbjct: 192 MNVVMTGSGGFV-EVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALEA 243


>gi|56381043|dbj|BAD76951.1| ribonuclease PH [Geobacillus kaustophilus HTA426]
          Length = 257

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 2   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATV----EEKVPSFMRGGGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 58  GWITAEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDC 117

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+              +PI   +A  ++G+     +  ++
Sbjct: 118 DVIQADGGTRTASITGAYVALVLALAKLVEEGRLEALPIRDFLAATSVGI---DPEHGVI 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T +G    +Q   +    S   +   L+ A+ G   ++   
Sbjct: 175 LDLDYNEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQ 234

Query: 536 SKVLSE 541
            + L E
Sbjct: 235 RRALGE 240



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G     +T  Y     A  +       + 
Sbjct: 23  KHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWITAEYGMLPRATEQRNVREASK- 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R +       E    +  +V+Q D        S+  A  AL+
Sbjct: 82  GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQADGG--TRTASITGAYVALV 139

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+   +ED   +  +++ ++G   
Sbjct: 140 LALAKLVEEGRLEALPIRDFLAATSVG-IDPEHGVILDLDYNEDARAKVDMNVVMTGAGQ 198

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS----KLAKMCAKEPIVIDSK 235
            V  ++    +   S   + + +       + +I        + A    ++    +  
Sbjct: 199 FV-EIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALGEWAARIGEKKEAAEED 255


>gi|221201201|ref|ZP_03574241.1| ribonuclease PH [Burkholderia multivorans CGD2M]
 gi|221206345|ref|ZP_03579358.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221213625|ref|ZP_03586599.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221166414|gb|EED98886.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221173654|gb|EEE06088.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221179051|gb|EEE11458.1| ribonuclease PH [Burkholderia multivorans CGD2M]
          Length = 246

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L    + 
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFLRERGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ +  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D              PI   VA I++G+     +   + 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSTLLAAGKLERSPIVDHVAAISVGVY----EGTPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMDALLDLAQSGIGTLVQLQK 238

Query: 537 KV 538
            V
Sbjct: 239 DV 240



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 23/215 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T      + +    +    LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH------VVSMV 132
            + T     I R+I R++R +F   +   +    +  +V+Q D  +         V +  
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHLDCDVIQADGGTRTASITGAFVAAHD 144

Query: 133 AASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           A S  L    L   P    V    V    G  VL+    ED      +++ ++G     +
Sbjct: 145 AVSTLLAAGKLERSPIVDHVAAISVGVYEGTPVLDLDYAEDSRCDTDMNVVMTG-AGGFV 203

Query: 187 MVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            V+  A  +  S   +   +    +    +++   
Sbjct: 204 EVQGTAEGVPFSRAEMDALLDLAQSGIGTLVQLQK 238


>gi|254976907|ref|ZP_05273379.1| ribonuclease PH [Clostridium difficile QCD-66c26]
 gi|255316047|ref|ZP_05357630.1| ribonuclease PH [Clostridium difficile QCD-76w55]
 gi|255518704|ref|ZP_05386380.1| ribonuclease PH [Clostridium difficile QCD-97b34]
 gi|255651826|ref|ZP_05398728.1| ribonuclease PH [Clostridium difficile QCD-37x79]
 gi|260684852|ref|YP_003216137.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260688510|ref|YP_003219644.1| ribonuclease Ph [Clostridium difficile R20291]
 gi|306521613|ref|ZP_07407960.1| ribonuclease Ph [Clostridium difficile QCD-32g58]
 gi|260211015|emb|CBA66330.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260214527|emb|CBE07044.1| ribonuclease Ph [Clostridium difficile R20291]
          Length = 449

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 101/250 (40%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R +E +R +       +   GS L   G+T+ I   ++    +E+    L  +   
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASV----EEKVPPFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +        G    R     RL  RAI  V+        T+ +  +
Sbjct: 59  WINAEYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+ +             +PI+  V+ I++G+V    + I + 
Sbjct: 119 VIQADGGTRTASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIV----NGIHML 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  +  TD      +Q   +    S   + + L+  ++G   ++    
Sbjct: 175 DLCYEEDSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQR 234

Query: 537 KVLSESRLQL 546
           + L E   ++
Sbjct: 235 EALGEIADEI 244



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 98/274 (35%), Gaps = 31/274 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL   GET V+ T   +  +           +   Y     A 
Sbjct: 13  RPVKI-TRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I R+IR +       E    V  +V+Q D       
Sbjct: 72  QQRKIRDASR-GKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            S+  A  A+            +  +P    V    V  +NG ++L+   +ED +  +D+
Sbjct: 129 ASITGAFVAVAEAIYKLYKAKTIKEMPITNFVSAISVGIVNGIHMLDLCYEEDSKAQVDM 188

Query: 177 FVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVID 233
            +  T     + V+    +   S   +   +  G    K +I    +     A E + +D
Sbjct: 189 NIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEIADEILGMD 248

Query: 234 SKDFSKLE-------EEMSQMIKEDLRVSCFIPE 260
             +   +        EE+ +++K+       + +
Sbjct: 249 YGNEVVIATNNAHKLEEIGEILKDFEYKVYSLKD 282


>gi|114769782|ref|ZP_01447392.1| ribonuclease PH [alpha proteobacterium HTCC2255]
 gi|114549487|gb|EAU52369.1| ribonuclease PH [alpha proteobacterium HTCC2255]
          Length = 237

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I  +VG  +   GS L   GDT  +   ++    +++    L  T  
Sbjct: 1   MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASV----EDRTPPWLRNTGM 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG  +R     G  S R     RL  R++   + +       + +  
Sbjct: 57  GWVTAEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL                P+++ VA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWIALRLAINAMIKAGDLKEDPLTEHVAAVSCGIY----GGQPI 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  +G+  +Q   +            +  A++G   ++   
Sbjct: 173 LDLDYAEDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQ 232

Query: 536 SKVLS 540
              +S
Sbjct: 233 KAAIS 237



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           RP+++E G   + ++G+ L   G+T VL T   +           +   T  Y     + 
Sbjct: 12  RPIEVEVG-FTKHAEGSCLIKCGDTHVLCTASVEDRTPPWLRNTGMGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G       RRE    + +     I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  G----SRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               S+     AL L+             P    V         GQ +L+    ED    
Sbjct: 125 TRCASITGGWIALRLAINAMIKAGDLKEDPLTEHVAAVSCGIYGGQPILDLDYAEDSEAG 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAIS 219
              +  ++G+ + ++ ++  A   + D       +         +I A  
Sbjct: 185 TDANFVMTGS-NGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQK 233


>gi|187478429|ref|YP_786453.1| ribonuclease PH [Bordetella avium 197N]
 gi|115423015|emb|CAJ49545.1| ribonuclease PH [Bordetella avium 197N]
          Length = 244

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 24/249 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            D  +R DGR  +T+R  S + G  +   GS L + G+TQ +   ++     E+    L 
Sbjct: 4   SDLSLRADGRAVDTLRAFSLKRGFTRYAEGSVLVVAGNTQVLCTASV----LEKVPPFLK 59

Query: 368 GTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           G         Y  LP AT          G  S R     RL  R++  V    A    TL
Sbjct: 60  GKGEGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTL 119

Query: 424 RIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A++ G+ +A       LM+ G+    PI   VA +++GLV     
Sbjct: 120 HLDCDVLQADGGTRCASITGAWVAAADAVALLMERGLLTQNPIRDHVAAVSVGLV----G 175

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              + D++ +ED     D  V  T +G    +Q   +    +   +   L  A+ G   +
Sbjct: 176 GRAVLDLNYEEDSACEADVNVIMTGAGAFVEVQGTGEEATFTRAQLDTMLTLAEGGIAKL 235

Query: 532 LNEMSKVLS 540
           + E     +
Sbjct: 236 VAEQRAARA 244



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 23/191 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R ++G+VL   G T VL T      +     G+    +T  Y     A     G      
Sbjct: 29  RYAEGSVLVVAGNTQVLCTASVLEKVPPFLKGKGEGWVTAEYGMLPRAT-HTRGDREAAR 87

Query: 82  SRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPHVVSMVAASAAL- 138
            + +     I R+I RS+R +F  K     T  +  +V+Q D        S+  A  A  
Sbjct: 88  GKQSGRTQEIQRLIGRSLRAVFDLKALGERTLHLDCDVLQADGG--TRCASITGAWVAAA 145

Query: 139 ----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                     +L+  P    V    V  + G+ VL+   +ED   +  +++ ++G   A 
Sbjct: 146 DAVALLMERGLLTQNPIRDHVAAVSVGLVGGRAVLDLNYEEDSACEADVNVIMTG-AGAF 204

Query: 186 LMVELEANQLS 196
           + V+    + +
Sbjct: 205 VEVQGTGEEAT 215


>gi|330826509|ref|YP_004389812.1| ribonuclease PH [Alicycliphilus denitrificans K601]
 gi|329311881|gb|AEB86296.1| Ribonuclease PH [Alicycliphilus denitrificans K601]
          Length = 245

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 24/236 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +           GS L   G+T+ +   ++    +E+      G+   
Sbjct: 9   RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASV----EEKVPPHKRGSGSG 64

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V    A    TL+I  +
Sbjct: 65  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D           A  PI+  VA +++G+V+       L 
Sbjct: 125 VIQADGGTRTAAITGAWVAAHDAVGTLLAAGKVAASPITGAVAAVSVGIVQGQP----LL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           D+   ED     D  V  T +G    +Q   +    S   M   L  A++G   ++
Sbjct: 181 DLEYVEDVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELM 236



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 81/227 (35%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T R    ++G+VL  +G T VL T   +  +     G     +T  Y     + 
Sbjct: 19  RPVRI-TRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTAEYGMLPRST 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +F  K     T Q+  +V+Q D       
Sbjct: 78  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQADGG--TRT 134

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  A             ++  P  G V    V  + GQ +L+    ED      +
Sbjct: 135 AAITGAWVAAHDAVGTLLAAGKVAASPITGAVAAVSVGIVQGQPLLDLEYVEDVACDTDM 194

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++ ++GT   V +    E    S   +   +         ++    +
Sbjct: 195 NVVMTGTGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELMLLQQE 241


>gi|322418585|ref|YP_004197808.1| ribonuclease PH [Geobacter sp. M18]
 gi|320124972|gb|ADW12532.1| ribonuclease PH [Geobacter sp. M18]
          Length = 239

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R +GR ++ +R++      L+   GS L   GDT+ I   T+ T+        L G    
Sbjct: 3   RTNGRAADALREVKITRNYLKHAEGSVLIEFGDTKVICNATVETK----VPSFLKGKGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   ++     G  S R     RL  R++  V+        ++ I  +
Sbjct: 59  WVTAEYCMLPRATHTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL D              P+ + VA +++G+V    D +   
Sbjct: 119 VIQADGGTRTASITGAYVALADALQSLVDNGELTRSPLREAVAAVSVGIV----DGVPFL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D     T S     +Q   +    +   M      A  G   +     
Sbjct: 175 DLDYPEDSSAEVDMNFVMTSSMRFVEVQGTAEAEPFTIEQMDAMRSHAILGLTRLFEIQQ 234

Query: 537 KV 538
           + 
Sbjct: 235 EA 236



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K+ T    + ++G+VL  +G+T V+     +  +     G+    +T  Y     A 
Sbjct: 13  REVKI-TRNYLKHAEGSVLIEFGDTKVICNATVETKVPSFLKGKGTGWVTAEYCMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                     + + +     I R+I RS+R +    K  +    +  +V+Q D       
Sbjct: 72  -HTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL            L+  P    V    V  ++G   L+   P     +  +
Sbjct: 129 ASITGAYVALADALQSLVDNGELTRSPLREAVAAVSVGIVDGVPFLDLDYPEDSSAEVDM 188

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  ++ +   V +    EA   + + +             + E   + 
Sbjct: 189 NFVMTSSMRFVEVQGTAEAEPFTIEQMDAMRSHAILGLTRLFEIQQEA 236


>gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14]
 gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14]
          Length = 241

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    + + +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDLAAI 234

Query: 535 MSKVLSE 541
               L +
Sbjct: 235 QRAALEK 241



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 24/201 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T      +   + G     +T  Y     A 
Sbjct: 13  RPVTIERGW-SKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + R       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLSGL-------------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P  G V    V  + G  +L+   +ED +   
Sbjct: 129 AAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVPLLDLCYEEDVRADT 188

Query: 175 DLFVSGTQDA-VLMVELEANQ 194
           D+ V  T D   + V+  A  
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEA 209


>gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
 gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
          Length = 246

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 29/250 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +      +    GS L   G+T+ + V +L     E       G+   
Sbjct: 5   RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLCVASLT----EGVPRWRQGSGEG 60

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT + S+     G    R     RL  R++  V+   +    T+ +  +
Sbjct: 61  WVTAEYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAG--------VP--------ISKPVAGIAMGLVKDGDD 472
           + ++DG +  A++ G+ +AL DA         +P        +   VA I++G++    D
Sbjct: 121 VLQADGGTRTASITGAYVALADAIKWGQKNGLIPLDKAHQKVLKDSVAAISVGII----D 176

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
                D+  +ED     D  V  T SG    +Q   +    +   +   L  A+ G   +
Sbjct: 177 GEPRLDLPYEEDVRAETDMNVVVTGSGEFIEVQGTAEHAPFTRAELGALLDLAEGGCKEL 236

Query: 532 LNEMSKVLSE 541
                  LSE
Sbjct: 237 AVFQEVALSE 246



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 31/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+K+    IA  ++G+ L  +G T VL        +   + G     +T  Y     A 
Sbjct: 15  RPVKITRNWIA-NAEGSCLIEFGNTRVLCVASLTEGVPRWRQGSGEGWVTAEYSMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +       +  +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 74  SQRSQRESVK-GKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLSG--------LPFEG--------PVVGAQVDYINGQYVLNPRLDED-- 170
            S+  A  AL  +         +P +          V    V  I+G+  L+   +ED  
Sbjct: 131 ASITGAYVALADAIKWGQKNGLIPLDKAHQKVLKDSVAAISVGIIDGEPRLDLPYEEDVR 190

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
            +  +++ V+G+ + +  V+  A     +   +   +      CK +     
Sbjct: 191 AETDMNVVVTGSGEFI-EVQGTAEHAPFTRAELGALLDLAEGGCKELAVFQE 241


>gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
 gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 26/230 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQA 524
           L D+  +ED     D  V  T  G    +Q   +    + + +   L  A
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLA 224



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 26/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     A 
Sbjct: 13  RPVTIERGW-SKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLSGL-------------PFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  + G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGGVPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++  +G    V +    EA   + D +   +      C  +    SK 
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVLGCSELTVLQSKA 238


>gi|258616327|ref|ZP_05714097.1| ribonuclease PH/Ham1 protein [Enterococcus faecium DO]
          Length = 253

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 99/243 (40%), Gaps = 23/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +  Q  + +   GS +   GDT  I   T+    ++     L  T  
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATI----EDSVPPFLRETGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +R     G  S R +   RL  R++  V+        ++ +  
Sbjct: 57  GWVTAEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             +  PI + +A +++G++ DG     +
Sbjct: 117 DVIQADGGTRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDG---TCV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +D+   ED    +D  +  T+SG    +Q   +        +   L   K     ++ E 
Sbjct: 174 TDLDYQEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQ 233

Query: 536 SKV 538
              
Sbjct: 234 KHA 236



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 31/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R L+L+T    +  +G+V+  +G+T V+ +   + S+           +T  Y     A 
Sbjct: 12  RKLELQTNVF-KYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
                   RRE    + +   + I R+I RS+R +    K  +    V  +V+Q D    
Sbjct: 71  S----TRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGS 173
               S+  A  AL            LS  P +  +    V    +G  V +    ED  +
Sbjct: 125 TRTASITGAFVALKLAIEKLLREKELSEDPIKEHLAAVSVGILPDGTCVTDLDYQEDSAA 184

Query: 174 L-DLFVSGTQ-DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
           L D+ +  T+    + ++    + +   + + + + FG N  + +I+   
Sbjct: 185 LVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQK 234


>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
           [Tribolium castaneum]
          Length = 249

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 9/233 (3%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R ++    +R DGR ++ +R I  ++G+     GS+   +G T+ +  V  G     Q  
Sbjct: 5   RELLSKIGLRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAV-YGPH---QVG 60

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            + +          ++    +TGE  +     R+        R+A+   +         +
Sbjct: 61  FAKAQHDSAVVNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQI 120

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  E+  +DG    A V  ++LAL+DAG+P+ + V      L  +    + L D+S  E
Sbjct: 121 DVYVEVLHADGGIYPACVNAATLALIDAGIPLKEYVCACTASLANND---VPLLDVSHQE 177

Query: 484 DHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + +G     VA       I  M+M  +        ++    Q  +    IL+E
Sbjct: 178 EIIGGPTLTVAALPMSGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDE 230



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 17/205 (8%)

Query: 28  DGAVLATYGETVVLATVVYDRS---LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G T VLA V         K   D   +   +    ++ G+      ++  R 
Sbjct: 37  DGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVNCQFSMAVFSTGE-----RKKRPRG 91

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLSG 142
                 IS  + +++           TQ+   + V+  D    P    + AA+ AL+ +G
Sbjct: 92  DRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADGGIYP--ACVNAATLALIDAG 149

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQG----SLDLFVSGTQDAVLMVELEANQLSED 198
           +P +  V        N    L     +++     +L +        ++++E+       D
Sbjct: 150 IPLKEYVCACTASLANNDVPLLDVSHQEEIIGGPTLTVAALPMSGKIVLMEMSQRFHV-D 208

Query: 199 VVLDAIIFGHNECKPVIEAISKLAK 223
            +   +      CK +   + +  K
Sbjct: 209 HLQKVLDKALQGCKDIKSILDEAVK 233


>gi|239817292|ref|YP_002946202.1| ribonuclease PH [Variovorax paradoxus S110]
 gi|239803869|gb|ACS20936.1| ribonuclease PH [Variovorax paradoxus S110]
          Length = 243

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 24/236 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +    G      GS L   G T+ +   ++    +E+      G+   
Sbjct: 6   RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASV----EERVPPHKRGSGEG 61

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++  V    A    T+ +  +
Sbjct: 62  WVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  DA             PI   VA I++G+V        L 
Sbjct: 122 VLQADGGTRTAAITGAFVAAQDAVNKLLAAGTIPASPIRGHVAAISVGIVAGTP----LL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           D+   ED     D  V  T +G    +Q   +    S   M + L  A++G   ++
Sbjct: 178 DLEYTEDSACDTDMNVVMTGAGHFVEVQGTAEGAAFSREEMNLLLGLAEKGIGELI 233



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 23/214 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G+T VL T   +  +     G     +T  Y     A             +
Sbjct: 28  AEGSVLIEFGQTRVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRAT-HTRSDREAARGK 86

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAAS------ 135
            +     I R+I RS+R +F      E    +  +V+Q D        ++  A       
Sbjct: 87  QSGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQADGG--TRTAAITGAFVAAQDA 144

Query: 136 -----AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV-L 186
                AA  +   P  G V    V  + G  +L+    ED      +++ ++G    V +
Sbjct: 145 VNKLLAAGTIPASPIRGHVAAISVGIVAGTPLLDLEYTEDSACDTDMNVVMTGAGHFVEV 204

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
               E    S + +   +         +I    +
Sbjct: 205 QGTAEGAAFSREEMNLLLGLAEKGIGELIVLQQQ 238


>gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
 gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
          Length = 252

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 26/222 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R IS   G   +  GS+L   G+T+ +   +L           L G  R
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLT----AGVPRWLKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL DA               P++  +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISEN 515
            + D+   ED     D  V  T SG    +Q   +      +
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRD 224



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 25/193 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  + Q++G+ L  +G T VL T      +     G+    +T  Y     A 
Sbjct: 22  RPISITRGW-SNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVTAEYAMLPRAT 80

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 81  NTRSDRESVK-GKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQADGG--TRT 137

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P    +    V  I+G  +L+    ED   + 
Sbjct: 138 AAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGIIDGVPMLDLPYVEDVRAET 197

Query: 173 SLDLFVSGTQDAV 185
            +++ V+G+   V
Sbjct: 198 DMNVVVTGSGKFV 210


>gi|332289145|ref|YP_004419997.1| ribonuclease PH [Gallibacterium anatis UMN179]
 gi|330432041|gb|AEC17100.1| ribonuclease PH [Gallibacterium anatis UMN179]
          Length = 239

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + RD+  +R I       +   GS L   GDT+ +   T+    +E     L G  +
Sbjct: 1   MRPNNRDNHAMRPIKITRHYTKHAEGSVLIEFGDTKVLCNATV----EETVPRFLKGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R +   RL  R++  ++  T     T+ +  
Sbjct: 57  GWITAEYGMLPRATNVRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS++AL D              PI   VA +++G+V+       L
Sbjct: 117 DVIQADGGTRTAAISGSAVALHDAIQTLLDKGLIKQNPIKNLVAAVSVGIVEQQQ----L 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  TD G +  +Q   +    S + ++  L  AK+G   I    
Sbjct: 173 CDLEYVEDSNAETDMNVVMTDDGRMIEVQGTAEGEPFSHDELLALLDLAKQGIAQINQAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 KAALQD 238



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 90/233 (38%), Gaps = 22/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    + ++G+VL  +G+T VL     + ++     GQ+   +T  Y     A 
Sbjct: 12  RPIKI-TRHYTKHAEGSVLIEFGDTKVLCNATVEETVPRFLKGQNQGWITAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
             +       + + +   + I R+I RS+R +       E  +    +V+Q D       
Sbjct: 71  N-VRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            ++  ++ AL            +   P +  V    V  +  Q + +    ++     D+
Sbjct: 128 AAISGSAVALHDAIQTLLDKGLIKQNPIKNLVAAVSVGIVEQQQLCDLEYVEDSNAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
            V  T D  + +E++     E    D ++   +  K  I  I++  K   ++ 
Sbjct: 188 NVVMTDDGRM-IEVQGTAEGEPFSHDELLALLDLAKQGIAQINQAQKAALQDK 239


>gi|239931006|ref|ZP_04687959.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291439379|ref|ZP_06578769.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291342274|gb|EFE69230.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
          Length = 245

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R I+ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVLCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATHTRGDRESVKGRIGGRTHEISRLVGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + GS +AL D                P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    +   +   L  A  G   + + 
Sbjct: 175 LLDLCYEEDVKADTDMNVVCTGDGRFVEVQGTAEAEPFARAELDALLDLAVAGCARLADA 234

Query: 535 MSKV 538
               
Sbjct: 235 QRAA 238



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T      +   + G     +T  Y     A 
Sbjct: 13  RPITIERGW-SKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + R       ISR++ RS+R +       E  V+   +V+Q D       
Sbjct: 72  -HTRGDRESVKGRIGGRTHEISRLVGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAAL--MLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  +  AL   +S             P  G V    V  + G  +L+   +ED +   
Sbjct: 129 AAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIVGGVPLLDLCYEEDVKADT 188

Query: 175 DLFVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
           D+ V  T D   + V+   EA   +   +   +      C  + +A 
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEAEPFARAELDALLDLAVAGCARLADAQ 235


>gi|187925061|ref|YP_001896703.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
 gi|226736896|sp|B2T6B5|RNPH_BURPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187716255|gb|ACD17479.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 93/254 (36%), Gaps = 24/254 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR +  +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTNDTQRPSGRQANQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  D              PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVAKLLATGRIESSPITDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S + M   L  A  G   
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVAFSRDEMNALLDLASDGINT 232

Query: 531 ILNEMSKVLSESRL 544
           ++ +    L +   
Sbjct: 233 LIAKQKAALEQKSE 246



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     S+      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A +  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVAKLLATGRIESSPITDYVAAISVGVYDGLPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            ++G     + ++  A  +  S D +   +    +    +I       + 
Sbjct: 195 VMTG-AGGFVEIQGTAEGVAFSRDEMNALLDLASDGINTLIAKQKAALEQ 243


>gi|78049070|ref|YP_365245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927895|ref|ZP_08189119.1| RNAse PH [Xanthomonas perforans 91-118]
 gi|123584287|sp|Q3BPR8|RNPH_XANC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78037500|emb|CAJ25245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541735|gb|EGD13253.1| RNAse PH [Xanthomonas perforans 91-118]
          Length = 241

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +    +   GS L   GDT+ +   ++    + +    L G    
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL DA             P+   VA +++G+ +       + 
Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLIKRGDIKKHPLIGAVAAVSVGIYRGEP----VL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +      + +   L  A++G   +     
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQR 236

Query: 537 KV 538
             
Sbjct: 237 AA 238



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL T   +  +     G+    +T  Y     + 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            ++  A  AL  +         +   P  G V    V    G+ VL+   P   +    +
Sbjct: 131 AAITGAYVALADAVNLLIKRGDIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22]
 gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22]
          Length = 245

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R ++ + G  +   GS L   GDT+     ++     E       G+   
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    +   +   L  A  G   +   
Sbjct: 175 LLDLRYEEDVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALL 234

Query: 535 MSKVLS 540
             K L 
Sbjct: 235 QRKALD 240



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 77/201 (38%), Gaps = 24/201 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T V  T      +   + G     +T  Y     A 
Sbjct: 13  RPVTIERGW-SKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       R       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P  G V    V  + G  +L+ R +ED +   
Sbjct: 129 AAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEEDVKADT 188

Query: 175 DLFVSGTQDA-VLMVELEANQ 194
           D+ V  T D   + V+  A  
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEA 209


>gi|218507624|ref|ZP_03505502.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli Brasil
           5]
          Length = 137

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 108/127 (85%)

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           VIR IVE+TGAK+NI+DDGTVKIASSS  EIEAAR+ I SI   PE+ +IY+G VVK  D
Sbjct: 1   VIREIVEKTGAKINIEDDGTVKIASSSGKEIEAARKWIHSIVAEPEIGQIYEGTVVKTAD 60

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           FGAFV+F GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ
Sbjct: 61  FGAFVNFFGARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQ 120

Query: 693 NTGKPIV 699
            TG+ I 
Sbjct: 121 ATGQEIA 127


>gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
 gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
          Length = 235

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 22/234 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R ++ + G+ +   GS L   GDT  +   +L    D +    L  +  
Sbjct: 1   MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASL----DARVPPFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT    +       S R     RL  RA+   + + A     + I  +
Sbjct: 57  GWVTAEYGMLPRATHSRMKREAKDGQSGRTQEIQRLVGRALRAGVDRVALGERQITIDCD 116

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G  +A       L+ AGV    P+S PV+ I+ G+         L 
Sbjct: 117 VIQADGGTRCAAITGGWVALRLAVNKLLKAGVIISDPLSAPVSAISCGIY----AGQALL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+   ED    +D     T   +  +QM  +    S   M   L  A +G   +
Sbjct: 173 DLDYPEDSEAGVDGNFIMTADRLVEIQMSAEGATFSRAQMDTLLDLATQGNAWL 226



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 30/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG ++R ++G+ L   G+T VL T   D  +           +T  Y     A 
Sbjct: 12  RKVTIETG-VSRHAEGSCLIKMGDTHVLCTASLDARVPPFLKNSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
                  ++RE+    +     I R++ R++R    +    E Q+    +V+Q D     
Sbjct: 71  ----HSRMKREAKDGQSGRTQEIQRLVGRALRAGVDRVALGERQITIDCDVIQADGG--T 124

Query: 127 HVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGS 173
              ++     AL            ++S  P   PV         GQ +L+    ++ +  
Sbjct: 125 RCAAITGGWVALRLAVNKLLKAGVIISD-PLSAPVSAISCGIYAGQALLDLDYPEDSEAG 183

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
           +D     T D ++ +++ A   +     +   +         +  A  +  K
Sbjct: 184 VDGNFIMTADRLVEIQMSAEGATFSRAQMDTLLDLATQGNAWLAAAQLEAVK 235


>gi|157963655|ref|YP_001503689.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
 gi|189043776|sp|A8H9B7|RNPH_SHEPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157848655|gb|ABV89154.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
          Length = 237

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R ++          GS L   GDT+ +   +     +E     L G  +
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASF----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R     RL  R++   +        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G I  +Q   +    S   ++  L  AK G   I++  
Sbjct: 173 CDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDIQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G+T VL T  ++  +     GQ    +T  Y     + 
Sbjct: 12  RPVTI-TRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I RS+R         E  ++   +V+Q D       
Sbjct: 71  HSRMQREAAR-GKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +       G+    P +  +    V    G+ + +    ED   +  +
Sbjct: 128 AAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ ++   E    S + +L  +    +  + +++   
Sbjct: 188 NVVMTET-GKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDIQK 233


>gi|299535538|ref|ZP_07048859.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
 gi|298728738|gb|EFI69292.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
          Length = 249

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 102/245 (41%), Gaps = 23/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+++ +R +      L    GS L   G+T+ I   T+    +++    L G  + 
Sbjct: 3   RFDGRNADGLRPVKIDSEYLLHPEGSVLIQVGNTKVICTATI----EDKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT + +      G  + R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+                P++  +A  ++G+V++      + 
Sbjct: 119 VIQADGGTRTASITGAFVAMTQAIAKFAEEKPFEKFPVTDFLAATSVGIVEEQG---AIL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +D  +  T +G    +Q   +    S   +   L   ++G   ++    
Sbjct: 176 DLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQK 235

Query: 537 KVLSE 541
             L E
Sbjct: 236 ITLGE 240



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 30/224 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T   +  +     GQ    +T  Y     A  +       R  +  
Sbjct: 27  GSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITAEYSMLPRATAQRTPRESSR-GKVN 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E    +  +V+Q D        S+  A  A+  +  
Sbjct: 86  GRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRTASITGAFVAMTQAIA 143

Query: 142 ----GLPFEG-PV----VGAQVDYINGQ-YVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                 PFE  PV        V  +  Q  +L+    ED      +++ ++G     + +
Sbjct: 144 KFAEEKPFEKFPVTDFLAATSVGIVEEQGAILDLNYVEDVAAAVDMNIVMTG-AGRFVEL 202

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAIS----KLAKMCA 226
           +    + +   + + + +  G    + ++E       +LA    
Sbjct: 203 QGTGEEATFSREELNELLALGEKGIQQLVELQKITLGELAHKVG 246


>gi|163732970|ref|ZP_02140414.1| ribonuclease PH [Roseobacter litoralis Och 149]
 gi|161393505|gb|EDQ17830.1| ribonuclease PH [Roseobacter litoralis Och 149]
          Length = 237

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +R +S + G  +   GS+L   GDT  +   T+    +++    + G+  
Sbjct: 1   MRPSGRELNEMRAVSIETGFTKHAEGSALIKIGDTHVLCTATI----EDRVPPFIKGSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G    R +   RL  R++   + + A     + +  
Sbjct: 57  GWVTAEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       LM AG     P+  PVA I+ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWIALRLAVNKLMKAGDVISDPLVDPVAAISCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T    +  +QM  +    S + M   +  A++G   ++   
Sbjct: 173 MDLDYPEDSEAGVDGNFIMTGTKRLIEVQMSAEGSTFSRDQMNQLMDLAEKGVGELVTAQ 232

Query: 536 SKVLS 540
               +
Sbjct: 233 RAATA 237



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 12  RAVSIETG-FTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I RS+R    +    E Q+    +V+Q D    
Sbjct: 71  N----TRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAAL------------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDED 170
               S+     AL            ++S  P   PV         GQ V++   P   E 
Sbjct: 125 TRCASITGGWIALRLAVNKLMKAGDVISD-PLVDPVAAISCGIYAGQPVMDLDYPEDSEA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
               +  ++GT+  + + +  E +  S D +   +         ++ A 
Sbjct: 184 GVDGNFIMTGTKRLIEVQMSAEGSTFSRDQMNQLMDLAEKGVGELVTAQ 232


>gi|329901883|ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
 gi|327548975|gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score =  151 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +       +   GS L   GDT+ I   ++    +++    L G  + 
Sbjct: 6   RPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASI----EDKVPGFLKGKGQG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T          G  S R     RL  R++      +A    TL +  +
Sbjct: 62  WMTAEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDCD 121

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       L+D GV    P+   VA I++G+ +       + 
Sbjct: 122 VIQADGGTRTASITGAMVAAHDAFSKLVDTGVLSAMPLKHFVAAISVGVFQGTP----VL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  DED     D  V  TD+G    +Q   +        M   L  A  G   ++    
Sbjct: 178 DLDYDEDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQR 237

Query: 537 KVLSES 542
           + L   
Sbjct: 238 RELGLP 243



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 20/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP++L T    + ++G+VL  +G+T V+ T   +  +     G+    +T  Y     + 
Sbjct: 16  RPVRL-TRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQGWMTAEYGMLPRST 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                     + + +     I R+I RS+R  F      E    +  +V+Q D  +    
Sbjct: 75  -HTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDCDVIQADGGTRTAS 133

Query: 129 V--SMVAASAALM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           +  +MVAA  A         LS +P +  V    V    G  VL+   DED      +++
Sbjct: 134 ITGAMVAAHDAFSKLVDTGVLSAMPLKHFVAAISVGVFQGTPVLDLDYDEDSTCDTDMNV 193

Query: 177 FVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            ++     + +    E        +   +       + +I    +
Sbjct: 194 VMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQRR 238


>gi|261418318|ref|YP_003252000.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|319767722|ref|YP_004133223.1| ribonuclease PH [Geobacillus sp. Y412MC52]
 gi|261374775|gb|ACX77518.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|317112588|gb|ADU95080.1| ribonuclease PH [Geobacillus sp. Y412MC52]
          Length = 256

 Score =  151 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S  +R +      ++   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATV----EEKVPSFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+              +PI   +A  ++G+     +  ++
Sbjct: 117 DVIQADGGTRTASITGAYVALVLALAKLVEEGKLEALPIRDFLAATSVGI---DPEHGVI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T +G    +Q   +    S   +   L+ A+ G   ++   
Sbjct: 174 LDLDYNEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQ 233

Query: 536 SKVLSE 541
              L E
Sbjct: 234 RCALGE 239



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G     +T  Y     A  +       + 
Sbjct: 22  KHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWITAEYGMLPRATEQRNVREASK- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R +       E    +  +V+Q D        S+  A  AL+
Sbjct: 81  GKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQADGG--TRTASITGAYVALV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+   +ED   +  +++ ++G   
Sbjct: 139 LALAKLVEEGKLEALPIRDFLAATSVG-IDPEHGVILDLDYNEDARAKVDMNVVMTGAGQ 197

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS----KLAKMCAKEPIVIDSK 235
            V  ++    +   S   + + +       + +I        + A    ++    +  
Sbjct: 198 FV-EIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALGEWAARIGEKKEAAEED 254


>gi|195953232|ref|YP_002121522.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
 gi|226736913|sp|B4U8T3|RNPH_HYDS0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|195932844|gb|ACG57544.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
          Length = 255

 Score =  151 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 25/254 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R I  Q        GS L   G+T+ I   ++     E     L G  +
Sbjct: 1   MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIA----ESVPPFLKGKNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   +      G    R     R+  RA+  V+  T     T+ I  
Sbjct: 57  GWITAEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+ DA +           PI   V  +++G+V D     ++
Sbjct: 117 DVIQADGGTRTASIVGAFIAMTDAIIKLNEQKLINSVPIRDTVGAVSVGIVND----RLM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  +  T +G +  +    +    +       L         I    
Sbjct: 173 LDLDFEEDSNAAVDMTIVATGNGEMVEIHSLGEEATYTRKEFEAMLDLGLESLKQIAELQ 232

Query: 536 SKVLSE-SRLQLGE 548
           +    +   + L +
Sbjct: 233 NVFYEKMPSINLWK 246



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 27/215 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           ++G+ L  +G T V+ T     S+     G++   +T  Y     A        +R    
Sbjct: 24  AEGSCLVEFGNTRVICTASIAESVPPFLKGKNQGWITAEYSMLPRA---TATRNMRESVT 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            +       I RMI R++R +       E    +  +V+Q D        S+V A  A+ 
Sbjct: 81  GKIGGRTHEIQRMIGRAMRAVIDLTKIGERTIWIDCDVIQADGG--TRTASIVGAFIAMT 138

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLM 187
                      ++ +P    V    V  +N + +L+   +ED   ++D+ +  T +  ++
Sbjct: 139 DAIIKLNEQKLINSVPIRDTVGAVSVGIVNDRLMLDLDFEEDSNAAVDMTIVATGNGEMV 198

Query: 188 VELEANQ---LSEDVVLDAIIFGHNECKPVIEAIS 219
                 +    +       +  G    K + E  +
Sbjct: 199 EIHSLGEEATYTRKEFEAMLDLGLESLKQIAELQN 233


>gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649]
 gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649]
          Length = 254

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 99/260 (38%), Gaps = 30/260 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M  ++ R DGR  E +R+I      L    GS L   G T+ +   +      E     L
Sbjct: 1   MTSQQTRHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFT----EGVPRWL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G         Y  LP +T   S    R G    R     RL  RA+  V+   A    T
Sbjct: 57  KGKGTGWVTSEYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKD 469
           + +  ++ ++DG +  A++ G+ +AL+DA               P+   +A +++G+V  
Sbjct: 117 IVVDCDVLQADGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVV-- 174

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG----ISENIMVMALQQAK 525
               + + D+   ED     D  V  T SG   +++     G       + +   L  A 
Sbjct: 175 --GGLPVLDLDYPEDSTADTDMNVVMTGSG-RYVEVQGTAEGADAAFDRDRLNELLDLAA 231

Query: 526 RGRLHILNEMSKVLSESRLQ 545
            G   +  E  K L E+  +
Sbjct: 232 AGCATLTLEQKKSLDEAPRE 251



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 74/226 (32%), Gaps = 27/226 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL    +   +     G+    +T  Y+    +          R+ +
Sbjct: 29  AEGSVLIEFGRTRVLCAASFTEGVPRWLKGKGTGWVTSEYEMLPRSTN-TRSDRESRKGK 87

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL--M 139
                  ISR+I R++R +       E  ++   +V+Q D        S+  A  AL   
Sbjct: 88  VGGRTHEISRLIGRALRAVIDTKALGENTIVVDCDVLQADGG--TRTASITGAYVALVDA 145

Query: 140 LSGL-----------PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAV 185
           +              P    +    V  + G  VL+   P        +++ ++G+   V
Sbjct: 146 IEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLDLDYPEDSTADTDMNVVMTGSGRYV 205

Query: 186 ---LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
                 E        D + + +      C  +     K      +E
Sbjct: 206 EVQGTAEGADAAFDRDRLNELLDLAAAGCATLTLEQKKSLDEAPRE 251


>gi|83594970|ref|YP_428722.1| ribonuclease PH [Rhodospirillum rubrum ATCC 11170]
 gi|123525443|sp|Q2RN60|RNPH_RHORT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83577884|gb|ABC24435.1| RNAse PH [Rhodospirillum rubrum ATCC 11170]
          Length = 240

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  +++R I  + G  +   GS +   GDT  +   ++    +E+    + G  +
Sbjct: 1   MRPSGRAVDSLRSIVLEPGYSKHAEGSCMARFGDTHVLCTASI----EERVPGWMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G  S R     RL  R++  V          +R+  
Sbjct: 57  GWVTAEYGMLPRSTHTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL  A             P++  VA ++ GL     D + +
Sbjct: 117 DVIQADGGTRTAAITGSWVALYQALARFEKLGLGALPPLTDHVAAVSCGLC----DGVAV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +    ++   +  L  A++G   ++   
Sbjct: 173 LDLDYAEDSTAQADANFVLTGTGGIVEIQGTAETSPFAQAQFMELLALAQKGITELVALQ 232

Query: 536 SKVLSESR 543
              L+  R
Sbjct: 233 KAALASLR 240



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + LE G  ++ ++G+ +A +G+T VL T   +  +     G     +T  Y     + 
Sbjct: 12  RSIVLEPG-YSKHAEGSCMARFGDTHVLCTASIEERVPGWMRGGGKGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
                       R +     I R+I RS+R +       E Q+    +V+Q D       
Sbjct: 71  -HTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  +  AL  +             P    V        +G  VL+    ED   Q   
Sbjct: 128 AAITGSWVALYQALARFEKLGLGALPPLTDHVAAVSCGLCDGVAVLDLDYAEDSTAQADA 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
           +  ++GT   ++ ++  A      +   ++ +         ++        
Sbjct: 188 NFVLTGT-GGIVEIQGTAETSPFAQAQFMELLALAQKGITELVALQKAALA 237


>gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1]
 gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32]
 gi|166228319|sp|A4Y2K5|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228321|sp|A1RET8|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1]
 gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32]
 gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200]
          Length = 237

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFT----EGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    +   ++  L  AK     I++  
Sbjct: 173 SDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +GET VL T  +   +     GQ    +T  Y     + 
Sbjct: 12  RPITI-TRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I R++R         E  ++   +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +       G+    P +  +    V    G+ + +    ED   +  +
Sbjct: 128 ASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ ++   E    + + +++ +    N  + +++   
Sbjct: 188 NVVMTET-GKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQK 233


>gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
 gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
 gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
 gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
          Length = 241

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 12/245 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R I A+VG++ +  GS++F  G+T+ I  V  G RE +    
Sbjct: 2   EYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV-YGPREIQNKSQ 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                     +  Y+    +TG+  R     RR      + R+ +   +         + 
Sbjct: 61  QKKN-DHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  ++LAL DAG+P+       + G +        L D++  ED
Sbjct: 119 IFLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP----LLDLNYVED 174

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G  D  V        ++ +QMD K   +           A  G   I   + +VL E+
Sbjct: 175 SAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAIAERIREVLQEN 231

Query: 543 RLQLG 547
             QL 
Sbjct: 232 TKQLE 236



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 16/223 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ-----DFFPLTVNYQERTY 68
           R +  E G +++ +DG+ +   G T V+A V   R +++       D   +   Y    +
Sbjct: 20  RQIVAEVGVVSK-ADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQF 78

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           + G       RR  +       +S +I +++           +Q+ I +     +     
Sbjct: 79  STGD------RRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGGTRS 132

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVS--GTQDAV 185
             + AA+ AL  +G+P     V     Y+N   +L+    ++  G  D+ V      D V
Sbjct: 133 ACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPKLDKV 192

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            +++++A  L  +            CK + E I ++ +   K+
Sbjct: 193 SLLQMDAK-LPMETFETVFALASEGCKAIAERIREVLQENTKQ 234


>gi|294783495|ref|ZP_06748819.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480373|gb|EFG28150.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
          Length = 435

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 115/312 (36%), Gaps = 30/312 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R I     +     GS L   G+T+ I   ++     E+    L GT + 
Sbjct: 3   REDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASV----SEKVPPFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E ++  A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +AL                P+   VA I++G +    D  ++ 
Sbjct: 119 VIQADGGTRTTSITGGYVALALAIKKLLKDEILEENPLIANVAAISVGKI----DSELMV 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED +  +D  V     G    +Q   +    +   +   L  A+     I++   
Sbjct: 175 DLKYSEDSVAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVKI 595
           KV+ +    L  F        I      + I  G + I  +    G ++  + +DGT   
Sbjct: 235 KVIEQ--ENLKIFLATGNKHKIDE---ISDIFSGIENIEILSINDGIEIPEVIEDGTTFE 289

Query: 596 ASSSLAEIEAAR 607
            +S    +E A+
Sbjct: 290 ENSKKKAVEIAK 301



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 19/216 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +     G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVTAEYSMLPRATNERNQREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQADGGTRTTSITGGYVALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  I+ + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLKDEILEENPLIANVAAISVGKIDSELMVDLKYSEDSVAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
              +   +   +   +       K +I+   K+ + 
Sbjct: 204 TGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 239


>gi|209966225|ref|YP_002299140.1| ribonuclease PH [Rhodospirillum centenum SW]
 gi|209959691|gb|ACJ00328.1| ribonuclease PH [Rhodospirillum centenum SW]
          Length = 239

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 24/216 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +S +  + +   GS L   GDT  +   ++    +++    L G  + 
Sbjct: 3   RPSGRSLDQMRPVSLETNVSKHAEGSCLVRFGDTHVLCTASV----EDRVPPFLRGQGQG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E +   A   R+ G      RL  R++  V    A    T++I  +
Sbjct: 59  WVTAEYGMLPRATAERTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + GS +AL  A             P++  VA ++ GL +       + 
Sbjct: 119 VLQADGGTRTAAITGSYVALALAFRHLTSIGFLKAQPLTDSVAAVSCGLYQ----GAPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGI 512
           D+   ED     D     T   GI  +Q   +    
Sbjct: 175 DLDYAEDSSAQADANFVLTGKGGIVEIQGTAEKTPF 210



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 24/202 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LET  +++ ++G+ L  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 13  RPVSLETN-VSKHAEGSCLVRFGDTHVLCTASVEDRVPPFLRGQGQGWVTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + R T     I R+I RS+R +       E   ++  +V+Q D       
Sbjct: 72  AE-RTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  +  AL L+             P    V         G  VL+    ED   Q   
Sbjct: 129 AAITGSYVALALAFRHLTSIGFLKAQPLTDSVAAVSCGLYQGAPVLDLDYAEDSSAQADA 188

Query: 175 DLFVSGTQDAVLMVELEANQLS 196
           +  ++G +  ++ ++  A +  
Sbjct: 189 NFVLTG-KGGIVEIQGTAEKTP 209


>gi|56550910|ref|YP_161749.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260753398|ref|YP_003226291.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|61215796|sp|Q5NRL6|RNPH_ZYMMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56542484|gb|AAV88638.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552761|gb|ACV75707.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 237

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS L   GDT+ +V  +L    +E+    L G  +
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASL----EERLPSWLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G  S R     RL  R++   +         + I  
Sbjct: 57  GWVTAEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL                PI   VA ++ G+ +     + +
Sbjct: 117 DVLQADGGTRTASISGGWVALRLAVNKLLASGQLTEDPIISQVAAVSCGISQ----GVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D       DS +  +Q   +     E  ++  L+ A+ G   I  E 
Sbjct: 173 LDLDYAEDSTAEADANFVMMGDSRLIEVQASAEGAPYDEEGLLRLLRLARMGCQQIFAEQ 232

Query: 536 SKVLS 540
            K ++
Sbjct: 233 KKAVA 237



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 22/229 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R L +ETG   R ++G+ L ++G+T VL T   +  L     G+    +T  Y     + 
Sbjct: 12  RSLSIETG-FTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       + +     I R+I RS+R         E Q+    +V+Q D  +    
Sbjct: 71  -HSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           +S    +  L ++ L         P    V         G  VL+    ED   +   + 
Sbjct: 130 ISGGWVALRLAVNKLLASGQLTEDPIISQVAAVSCGISQGVPVLDLDYAEDSTAEADANF 189

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
            + G    ++ V+  A      E+ +L  +      C+ +     K   
Sbjct: 190 VMMG-DSRLIEVQASAEGAPYDEEGLLRLLRLARMGCQQIFAEQKKAVA 237


>gi|320530746|ref|ZP_08031790.1| ribonuclease PH [Selenomonas artemidis F0399]
 gi|320137033|gb|EFW28971.1| ribonuclease PH [Selenomonas artemidis F0399]
          Length = 248

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 21/244 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R D R  + +R +  + G  +   GS+L   G T+ +   T+    +E+    L G+  
Sbjct: 2   PRRDLRRPDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSATV----EERVPFFLKGSGT 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH----GRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP A  E +   A   R+ G      RL  RA+  V+   A    T+ I  
Sbjct: 58  GWVTAEYAMLPGAGTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAG---------VPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL++A           P+    A +++G+   G +   L D
Sbjct: 118 DVVQADGGTRTASITGAFVALVEACATFYTKRGVFPVRDYAAAVSVGI---GAENTPLLD 174

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           I  +ED    +D  +  T +G    +Q   +    S   M   L   +RG   +++   +
Sbjct: 175 ICYEEDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKR 234

Query: 538 VLSE 541
            L E
Sbjct: 235 ALGE 238



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 31/231 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+++E G   R   G+ L   G T V+ +   +    +   FF        +T  Y   
Sbjct: 13  RPVRIERG-YQRYPAGSALIEMGHTRVVCSATVE----ERVPFFLKGSGTGWVTAEYAML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
             A G           R T     I R+I R++R +       E    +  +V+Q D   
Sbjct: 68  PGA-GTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQADGG- 125

Query: 125 SPHVVSMVAASAALMLSGLPFEG-----PV----VGAQVDY-INGQYVLNPRLDEDQ--- 171
                S+  A  AL+ +   F       PV        V        +L+   +ED    
Sbjct: 126 -TRTASITGAFVALVEACATFYTKRGVFPVRDYAAAVSVGIGAENTPLLDICYEEDAQAM 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             ++L ++G    + +    E    S   +   +  G    + +I+   + 
Sbjct: 185 VDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRA 235


>gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 253

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +S     L    GS L   G T+ +V  ++     E       G+   
Sbjct: 10  RSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASVT----EGVPRWRRGSGLG 65

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       SR G  S R     RL  R++  V+   A    T+ + ++
Sbjct: 66  WVTSEYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDAD 125

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL D           AG P++  V+ I++G+V      + + 
Sbjct: 126 VLQADGGTRTASITGAYVALHDAVEWLRERGSLAGEPLTGSVSAISVGIV----KGVPML 181

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ DED    +D  +  T +G    +Q   +       ++   L  A +G   + +   
Sbjct: 182 DLAYDEDSTADVDMNIVATGTGDFVEVQGTAEGATFDRKLLGRLLDLADKGNRELTDLQQ 241

Query: 537 KVLSES 542
           +V++ +
Sbjct: 242 RVIAAA 247



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 26/223 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L   G T VL        +   + G     +T  Y+    A         RR  +
Sbjct: 32  AEGSCLIEAGRTRVLVAASVTEGVPRWRRGSGLGWVTSEYEMLPRATNTRNDRESRR-GK 90

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL--- 138
            +     ISR+I RS+R +       E  ++   +V+Q D        S+  A  AL   
Sbjct: 91  ISGRTHEISRLIGRSLRAVIDYKALGENTIVVDADVLQADGG--TRTASITGAYVALHDA 148

Query: 139 --------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLM 187
                    L+G P  G V    V  + G  +L+   DED      +++  +GT D V  
Sbjct: 149 VEWLRERGSLAGEPLTGSVSAISVGIVKGVPMLDLAYDEDSTADVDMNIVATGTGDFV-E 207

Query: 188 VELEANQLSEDVVLDA--IIFGHNECKPVIEAISK-LAKMCAK 227
           V+  A   + D  L    +       + + +   + +A    K
Sbjct: 208 VQGTAEGATFDRKLLGRLLDLADKGNRELTDLQQRVIAAADGK 250


>gi|239831019|ref|ZP_04679348.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
 gi|239823286|gb|EEQ94854.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
          Length = 238

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R +S + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG+  R     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G  +AL +                +   +A I+ G+ +       
Sbjct: 117 DVIQADGGTRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHIAAISCGIYEGEP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED +   D     T   GI  +Q   +    SE      ++ A+ G   +++ 
Sbjct: 173 VLDLDYAEDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFASLMKLARGGIDRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKMAVA 238



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 35/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +  E G I++ ++G+ L  +G+T VL T   +  +  G         +T  Y     +
Sbjct: 12  RAVSFERG-ISKHAEGSCLVKFGDTHVLCTASLEEKV-PGWMRNTGKGWVTAEYGMLPRS 69

Query: 70  VGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
            G      +RRE    +       I R+I RS+R +       E Q+    +V+Q D   
Sbjct: 70  TGD----RMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                ++     AL                   +  +         G+ VL+    ED  
Sbjct: 125 -TRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYAEDSV 183

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +   +  ++G +  ++ ++  A     SE+     +         ++        
Sbjct: 184 AETDSNFVMTG-KGGIVEIQGTAEGAPFSEEEFASLMKLARGGIDRLVSLQKMAVA 238


>gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
 gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
          Length = 245

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D                P++  V+ +++G+V      + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIV----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    + + +   L  A  G   +   
Sbjct: 175 LLDLRYEEDVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAA 234

Query: 535 MSKVLS 540
             K L 
Sbjct: 235 QRKALD 240



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 26/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T      +   + G     +T  Y     A 
Sbjct: 13  RPVSIERGW-SKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       R       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL  +               P  G V    V  + G  +L+ R +ED +   
Sbjct: 129 AAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRYEEDVKADT 188

Query: 175 DLFVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           D+ V  T D   + V+   EA   + D +   +      C  +  A  K 
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRKA 238


>gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161]
 gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818]
 gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818]
          Length = 248

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  V     P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGICELIEIQ 233

Query: 536 SKVLSE 541
            + L +
Sbjct: 234 KETLGD 239



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSETELAELIALGKKGICELIEIQKE 235


>gi|229019707|ref|ZP_04176514.1| Ribonuclease PH [Bacillus cereus AH1273]
 gi|229027352|ref|ZP_04183607.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228733960|gb|EEL84699.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228741614|gb|EEL91807.1| Ribonuclease PH [Bacillus cereus AH1273]
          Length = 245

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRGQAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  +   V   ++  ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQADKVSKIPVKDYLAATS---VGVVEEQGVV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYSMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQ-VDYINGQYVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +             VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQADKVSKIPVKDYLAATSVGVVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         ++E   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEA 236


>gi|24375740|ref|NP_719783.1| ribonuclease PH [Shewanella oneidensis MR-1]
 gi|61216058|sp|Q8E9L4|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24350681|gb|AAN57227.1|AE015858_8 ribonuclease PH [Shewanella oneidensis MR-1]
          Length = 237

 Score =  151 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFT----EGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+         +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    +   ++  L  AK     I++  
Sbjct: 173 SDLEYVEDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +GET VL T  +   +     GQ    +T  Y     + 
Sbjct: 12  RPITI-TRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I R++R         E  ++   +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +       G+    P +  +    V   NG+ + +    ED   +  +
Sbjct: 128 ASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ ++   E    + + +++ +    N  + +++   
Sbjct: 188 NVVMTET-GKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQK 233


>gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405]
 gi|125712937|gb|ABN51429.1| RNAse PH [Clostridium thermocellum ATCC 27405]
          Length = 263

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 24/254 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R +      ++   GS L   GDT+ I   T+    D++       T   
Sbjct: 3   RIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATV----DDKVPPFKKNTGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAP----SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   +         S R     RL  RA+  V+         + I  +
Sbjct: 59  WVTAEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +AL+DA            +P++  +A +++G+V   +    + 
Sbjct: 119 VIQADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIVDGEE----ML 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T  G    +Q   +     +      L  A++G   ++    
Sbjct: 175 DLCYMEDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQK 234

Query: 537 KVLSESRLQLGEFT 550
             L +   ++G  T
Sbjct: 235 DALGQVASEVGRVT 248



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 89/238 (37%), Gaps = 30/238 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           RP+K+    I + ++G+VL   G+T V+ T   D  +       G+ +     +   R  
Sbjct: 13  RPVKITRNYI-KHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVTAEYSMLPRAT 71

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSP 126
           A  + P    +   + +     I R+I R++R + +       E  +  +V+Q D     
Sbjct: 72  AA-RNPRDISK--LKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQADGG--T 126

Query: 127 HVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
              S+     AL+           +  +P    +    V  ++G+ +L+    ED     
Sbjct: 127 RTASITGGFVALVDACKKLVDDGIIEKIPVTDFLAAVSVGIVDGEEMLDLCYMEDSNAAT 186

Query: 173 SLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            +++ ++ ++   + ++    QL   ++     + F       +IE         A E
Sbjct: 187 DMNVVMT-SKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQVASE 243


>gi|153007527|ref|YP_001368742.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
 gi|166228300|sp|A6WVA9|RNPH_OCHA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|151559415|gb|ABS12913.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
          Length = 238

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R +S + G+ +   GS L   GDT  +   +L    +E+    +  T +
Sbjct: 1   MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASL----EEKVPGWMRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG+  R     G    R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA------------GVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A + G  +AL +                +   +A I+ G+ +       
Sbjct: 117 DVIQADGGTRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHIAAISCGIYEGEP---- 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED +   D     T   GI  +Q   +    SE      ++ A+ G   +++ 
Sbjct: 173 VLDLDYAEDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFANLMKLARGGIDRLVSL 232

Query: 535 MSKVLS 540
               ++
Sbjct: 233 QKMAVA 238



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 35/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +  E G I++ ++G+ L  +G+T VL T   +  +  G         +T  Y     +
Sbjct: 12  RAVSFERG-ISKHAEGSCLVKFGDTHVLCTASLEEKV-PGWMRNTGKGWVTAEYGMLPRS 69

Query: 70  VGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
            G      +RRE    +       I R+I RS+R +       E Q+    +V+Q D   
Sbjct: 70  TGD----RMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                ++     AL                   +  +         G+ VL+    ED  
Sbjct: 125 -TRTAAITGGWVALHECLRWMEARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYAEDSV 183

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +   +  ++G +  ++ ++  A     SE+   + +         ++        
Sbjct: 184 AETDSNFVMTG-KGGIVEIQGTAEGAPFSEEEFANLMKLARGGIDRLVSLQKMAVA 238


>gi|161170278|gb|ABX59248.1| RNase PH [uncultured marine bacterium EB000_55B11]
 gi|297183806|gb|ADI19929.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 252

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I  +VG  +   GS L   GDT  +   ++  R        L  T  
Sbjct: 16  MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVXDR----TPPWLRNTGM 71

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG  +R     G  S R     RL  R++   + +       + +  
Sbjct: 72  GWVTAEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDC 131

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL                P+++ VA ++ G+         +
Sbjct: 132 DVLQADGGTRCASITGGWIALRLAINAMIKAGDLKEDPLTEHVAAVSCGIY----GGQPI 187

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  +G+  +Q   +            +  A++G   ++   
Sbjct: 188 LDLDYAEDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQ 247

Query: 536 SKVLS 540
              +S
Sbjct: 248 KAAIS 252



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 36/232 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK----DGQDFFPLTVNYQERTY 68
           RP+++E G   + ++G+ L   G+T VL T  V DR+       G  +  +T  Y     
Sbjct: 27  RPIEVEVG-FTKHAEGSCLIKCGDTHVLCTASVXDRTPPWLRNTGMGW--VTAEYGMLPR 83

Query: 69  AVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLE 123
           + G       RRE    + +     I R+I RS+R    +    E Q+    +V+Q D  
Sbjct: 84  STG----SRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQADGG 139

Query: 124 SSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ- 171
                 S+     AL L+             P    V         GQ +L+    ED  
Sbjct: 140 --TRCASITGGWIALRLAINAMIKAGDLKEDPLTEHVAAVSCGIYGGQPILDLDYAEDSE 197

Query: 172 --GSLDLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAIS 219
                +  ++G+ + ++ ++  A   + D       +         +I A  
Sbjct: 198 AGTDANFVMTGS-NGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQK 248


>gi|253997760|ref|YP_003049823.1| ribonuclease PH [Methylovorus sp. SIP3-4]
 gi|253984439|gb|ACT49296.1| ribonuclease PH [Methylovorus sp. SIP3-4]
          Length = 238

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 31/236 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R++  +R I       +   GS L   GDT  +   ++    DE+    L G  +
Sbjct: 1   MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASV----DEKVPGFLRGKNQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G  S R     RL  R++  ++        +++I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           +  P+   VA +++G+ +       +
Sbjct: 117 DVIQADGGTRTASITGAYVALHDAISRLLAQGLISESPLRDSVAAVSVGVYQGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED     D  V  T SG   +++     G+         Q+A   R+  L
Sbjct: 173 LDLDYIEDSDCDTDMNVVMTGSGG-YVEIQGTAEGVP-------FQRADMDRMLDL 220



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++      + ++G+VL  +G+T VL T   D  +     G++   +T  Y     + 
Sbjct: 12  RPIEI-IRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G        R  + +     I R+I RS+R +    K  +   Q+  +V+Q D       
Sbjct: 71  GSRMDREAAR-GKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            +S  P    V    V    G  VL+    ED      +
Sbjct: 128 ASITGAYVALHDAISRLLAQGLISESPLRDSVAAVSVGVYQGTPVLDLDYIEDSDCDTDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V  ++  A  +      +   +       + +    +K 
Sbjct: 188 NVVMTGSGGYV-EIQGTAEGVPFQRADMDRMLDLAAAGIRELTSLQAKA 235


>gi|126724518|ref|ZP_01740361.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
 gi|126705682|gb|EBA04772.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
          Length = 235

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 23/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+   +RD+  +  + +   GS L   GDT  +   +L           L  +  
Sbjct: 1   MRPSGRELNQMRDVVIETNVTRHAEGSCLIKMGDTHVLCTASLEPG----VPRFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT    R       S R     RL  R++   + + A     + I  +
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAKNGQSGRTQEIQRLIGRSLRACIDRVALGERQITIDCD 116

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +A       LM AG     PI   +A ++ G+         + 
Sbjct: 117 VIQADGGTRCASITGGWVALRLAVNRLMKAGEVKTDPIMDHIAAVSCGIY----AGQCVL 172

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D     T   G+  +Q   +    S +     +  A++G   ++    
Sbjct: 173 DLDYPEDSEAGTDGNFVMTGAKGMVELQGSAEGATFSRDQFNQLMDLAEKGVDELVAAQK 232

Query: 537 KV 538
             
Sbjct: 233 AA 234



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 79/235 (33%), Gaps = 37/235 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           R + +ET  + R ++G+ L   G+T VL T     SL+ G   F        +T  Y   
Sbjct: 12  RDVVIETN-VTRHAEGSCLIKMGDTHVLCTA----SLEPGVPRFLKNSGLGWVTAEYGML 66

Query: 67  TYAVGKIPGGYLRRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL 122
             A        +RRE+    +     I R+I RS+R    +    E Q+    +V+Q D 
Sbjct: 67  PRATN----TRMRREAKNGQSGRTQEIQRLIGRSLRACIDRVALGERQITIDCDVIQADG 122

Query: 123 ESSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN---PRLD 168
                  S+     AL L+             P    +         GQ VL+   P   
Sbjct: 123 G--TRCASITGGWVALRLAVNRLMKAGEVKTDPIMDHIAAVSCGIYAGQCVLDLDYPEDS 180

Query: 169 EDQGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           E     +  ++G +  V L    E    S D     +         ++ A     
Sbjct: 181 EAGTDGNFVMTGAKGMVELQGSAEGATFSRDQFNQLMDLAEKGVDELVAAQKAAV 235


>gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4]
 gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7]
 gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3]
 gi|123131815|sp|Q0HZV0|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123324577|sp|Q0HE49|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228320|sp|A0L1S6|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4]
 gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7]
 gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3]
          Length = 237

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFT----EGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+         +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S   ++  L  AK     I++  
Sbjct: 173 SDLEYVEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELIELLGLAKNSIREIVDVQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +GET VL T  +   +     GQ    +T  Y     + 
Sbjct: 12  RPITI-TRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I R++R         E  ++   +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +       G+    P +  +    V   NG+ + +    ED   +  +
Sbjct: 128 ASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ ++   E    S + +++ +    N  + +++   
Sbjct: 188 NVVMTET-GKIIEIQGTAEGEPFSHEELIELLGLAKNSIREIVDVQK 233


>gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
          Length = 252

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 26/221 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R IS   G   +  GS+L   G+T+ +   +L           L G  R
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLT----AGVPRWLKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL D+               PI   +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
            + D+   ED     D  V  T SG    +Q   +      
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDR 223



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 25/193 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  + Q++G+ L  +G T VL T      +     G+    +T  Y     A 
Sbjct: 22  RPISITRGW-SNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVTAEYAMLPRAT 80

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 81  NTRSDRESVK-GKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQADGG--TRT 137

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  S               P    +    V  I+G  +L+    ED   + 
Sbjct: 138 AAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGIIDGVPMLDLPYVEDVRAET 197

Query: 173 SLDLFVSGTQDAV 185
            +++ V+G+   V
Sbjct: 198 DMNVVVTGSGKFV 210


>gi|163942228|ref|YP_001647112.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|229013696|ref|ZP_04170825.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
 gi|229135326|ref|ZP_04264120.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|229169222|ref|ZP_04296936.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|226736888|sp|A9VIV4|RNPH_BACWK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163864425|gb|ABY45484.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|228614288|gb|EEK71399.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|228648149|gb|EEL04190.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|228747618|gb|EEL97492.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
          Length = 245

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 1   MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  +   V   ++  ++
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATS---VGVVEEQGVV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 174 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQ 233

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 234 KEALGDIVSHIE 245



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 12  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYSMIPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQ-VDYINGQYVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +             VL+    ED      
Sbjct: 128 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGVVEEQGVVLDLNYAEDSKADVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         ++E   + 
Sbjct: 188 MNVIMTG-KGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEA 236


>gi|319761729|ref|YP_004125666.1| ribonuclease ph [Alicycliphilus denitrificans BC]
 gi|317116290|gb|ADU98778.1| ribonuclease PH [Alicycliphilus denitrificans BC]
          Length = 245

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 24/236 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +           GS L   G+T+ +   ++    +E+      G+   
Sbjct: 9   RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASV----EEKVPPHKRGSGSG 64

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V    A    TL+I  +
Sbjct: 65  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D           A  PI+  VA +++G+V+       L 
Sbjct: 125 VIQADGGTRTAAITGAWVAAHDAVGTLLAAGKVAASPITGAVAAVSVGIVQGQP----LL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           D+   ED     D  V  T +G    +Q   +    S   M   L  A++G   ++
Sbjct: 181 DLEYVEDVACDTDMNVVMTGAGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELV 236



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T R    ++G+VL  +G T VL T   +  +     G     +T  Y     + 
Sbjct: 19  RPVRI-TRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTAEYGMLPRST 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +F  K     T Q+  +V+Q D       
Sbjct: 78  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQADGG--TRT 134

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  A             ++  P  G V    V  + GQ +L+    ED      +
Sbjct: 135 AAITGAWVAAHDAVGTLLAAGKVAASPITGAVAAVSVGIVQGQPLLDLEYVEDVACDTDM 194

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++ ++G    V +    E    S   +   +         ++    +
Sbjct: 195 NVVMTGAGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELVLLQQE 241


>gi|229062175|ref|ZP_04199499.1| Ribonuclease PH [Bacillus cereus AH603]
 gi|228717158|gb|EEL68834.1| Ribonuclease PH [Bacillus cereus AH603]
          Length = 259

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R I      L+   GS L   GDT+ I   T+    +E+    + G  +
Sbjct: 15  MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI----EERVPPFMRGEGK 70

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT +     S  G  + R +   RL  RA+  V+   A    T+ I  
Sbjct: 71  GWVTAEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDC 130

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P+   +A  +   V   ++  ++
Sbjct: 131 DVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATS---VGVVEEQGVV 187

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T  G    +Q   +    S   +   L  A++G   ++ + 
Sbjct: 188 LDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQ 247

Query: 536 SKVLSESRLQLG 547
            + L +    + 
Sbjct: 248 KEALGDIVSHIE 259



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  + +  +G+VL   G+T V+ +   +  +     G+    +T  Y     A 
Sbjct: 26  RHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYSMIPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +        + + T   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 85  -EQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 141

Query: 129 VSMVAASAALML-----------SGLPFEGPVVGAQ-VDYINGQYVLNPRLDEDQG---S 173
            S+  A  A++L           S +P +  +             VL+    ED      
Sbjct: 142 ASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGVVEEQGVVLDLNYAEDSKADVD 201

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++G +   + V+    + +     + + +         ++E   + 
Sbjct: 202 MNVIMTG-KGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEA 250


>gi|294142837|ref|YP_003558815.1| ribonuclease PH [Shewanella violacea DSS12]
 gi|293329306|dbj|BAJ04037.1| ribonuclease PH [Shewanella violacea DSS12]
          Length = 237

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R ++          GS L   G+T+ +   +     +E     L G  +
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASF----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R++   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G +  +Q   +    S   ++  L+ AK G   I++  
Sbjct: 173 CDLEYIEDSAAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 85/226 (37%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +GET VL T  ++  +     G+    +T  Y     + 
Sbjct: 12  RPVTI-TRQFTAHAEGSVLVEFGETKVLCTASFEEGVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       + +     I R+I RS+R         E  ++   +V+Q D       
Sbjct: 71  -HTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +       G+    P +  +    V    G+ + +    ED   +  +
Sbjct: 128 AAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   + +    E    S + +L  +    +  + +++   
Sbjct: 188 NVVMTETGKMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQK 233


>gi|255263447|ref|ZP_05342789.1| ribonuclease PH [Thalassiobium sp. R2A62]
 gi|255105782|gb|EET48456.1| ribonuclease PH [Thalassiobium sp. R2A62]
          Length = 235

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 22/230 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ +  + +   GS L   GDT  +   T+    +++    +  +  
Sbjct: 1   MRPSGRSIDEMRAITIETDVTKHAEGSCLIQCGDTHVLCAATV----EDRVPPFMRNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT    R       S R     RL  R++   + + A     + +  +
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQITVDCD 116

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +AL  A             P+  PVA I+ G+         + 
Sbjct: 117 VIQADGGTRCASITGGWVALKLAVNKLIKAGDIISDPLETPVAAISCGIY----AGQAVL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           D+   ED    +D     T S +  +QM  +    S + M   +  A++G
Sbjct: 173 DLDYPEDSEAGVDGNFVMTGSQMIEVQMSAEGATFSRDQMNELVDLAEKG 222



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 79/227 (34%), Gaps = 28/227 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +ET  + + ++G+ L   G+T VL     +  +        L   T  Y     A 
Sbjct: 12  RAITIET-DVTKHAEGSCLIQCGDTHVLCAATVEDRVPPFMRNSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
                  +RRE+    +     I R+I RS+R    +    E Q+    +V+Q D     
Sbjct: 71  N----TRMRREAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGG--T 124

Query: 127 HVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQG 172
              S+     AL L+         +   P E PV         GQ VL+   P   E   
Sbjct: 125 RCASITGGWVALKLAVNKLIKAGDIISDPLETPVAAISCGIYAGQAVLDLDYPEDSEAGV 184

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             +  ++G+Q   + +  E    S D + + +         +     
Sbjct: 185 DGNFVMTGSQMIEVQMSAEGATFSRDQMNELVDLAEKGVAELSRLQI 231


>gi|121997764|ref|YP_001002551.1| ribonuclease PH [Halorhodospira halophila SL1]
 gi|166228286|sp|A1WVN7|RNPH_HALHL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|121589169|gb|ABM61749.1| RNAse PH [Halorhodospira halophila SL1]
          Length = 238

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R IS Q    +   GS L   GDT+ +   ++    + +    L G  R
Sbjct: 1   MRPSGRRADELRPISIQRQFTKHAEGSVLIGFGDTRVLCTASV----EARVPPWLRGQGR 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G    R +   RL  R++   +   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA             P+   VA +++G+ +       +
Sbjct: 117 DVLQADGGTRTAAITGAFVALTDALEGLVRQRALPASPLHGQVASVSVGVYRGEP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D+G    +Q   +      + +   L  A++G   +L   
Sbjct: 173 LDLDYAEDGEAETDMNVVMNDAGAFIELQGTAEGHAFRRDELDRMLALAEKGVGELLQHQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 QEA 235



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ ++  +  + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 12  RPISIQR-QFTKHAEGSVLIGFGDTRVLCTASVEARVPPWLRGQGRGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I RS+R         E  V+   +V+Q D       
Sbjct: 71  -HTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            ++  A  AL            L   P  G V    V    G+ VL+    ED +   D+
Sbjct: 128 AAITGAFVALTDALEGLVRQRALPASPLHGQVASVSVGVYRGEPVLDLDYAEDGEAETDM 187

Query: 177 -FVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             V     A + ++   E +    D +   +         +++   +   
Sbjct: 188 NVVMNDAGAFIELQGTAEGHAFRRDELDRMLALAEKGVGELLQHQQEALA 237


>gi|94968644|ref|YP_590692.1| ribonuclease PH [Candidatus Koribacter versatilis Ellin345]
 gi|94550694|gb|ABF40618.1| RNAse PH [Candidatus Koribacter versatilis Ellin345]
          Length = 245

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R D R  + +R +S     +    GS L   G+T+ I   ++    +E     L  + 
Sbjct: 2   HFRSDNRTPDQLRPVSIIPDYISTAEGSCLIEVGNTRVICTASI----EESVPSFLRNSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT   +      G  S R     RL  R++  V   T     TL + 
Sbjct: 58  KGWLTSEYAMLPRATLTRTPREVSKGRASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVD 117

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A       L +AG     P+   VA  ++G+V    D  +
Sbjct: 118 CDVIQADGGTRTASITGAFVAVGLAVQKLTEAGTLSISPLRDYVAATSVGIV----DGAV 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D++ +ED    +D  +  T S  +  +Q   +     +  +   +  AK G   ++ +
Sbjct: 174 LLDLAYEEDSRAEVDMNIVMTGSRKMVEIQGTAEQHPFDDEQLAKMMSLAKAGIEQLIVK 233

Query: 535 MSKV 538
               
Sbjct: 234 QKAA 237



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 81/215 (37%), Gaps = 27/215 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV-GKIPGGYLRRES 82
           ++G+ L   G T V+ T   + S+           LT  Y     A   + P    +   
Sbjct: 26  AEGSCLIEVGNTRVICTASIEESVPSFLRNSGKGWLTSEYAMLPRATLTRTPREVSK--G 83

Query: 83  RPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL-- 138
           R +     I R+I RS+R +   +K  +    V  +V+Q D        S+  A  A+  
Sbjct: 84  RASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVDCDVIQADGG--TRTASITGAFVAVGL 141

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                     LS  P    V    V  ++G  +L+   +ED   +  +++ ++G++  ++
Sbjct: 142 AVQKLTEAGTLSISPLRDYVAATSVGIVDGAVLLDLAYEEDSRAEVDMNIVMTGSR-KMV 200

Query: 187 MVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
            ++  A Q    ++ +   +       + +I    
Sbjct: 201 EIQGTAEQHPFDDEQLAKMMSLAKAGIEQLIVKQK 235


>gi|266619742|ref|ZP_06112677.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
 gi|288868673|gb|EFD00972.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
          Length = 192

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/151 (42%), Positives = 96/151 (63%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           ++ P++E + I P +I +V+G  GKVI  I+E+TG K++I DDG+V +  +    I  A 
Sbjct: 2   KYAPKIEQITIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGSVSVCGTDKDMIARAI 61

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+I+SI    E   + KG+VV++M+FGAFV     +DG+VHIS+LS +RV K  D V  G
Sbjct: 62  EIIKSIVTDIEPGAVMKGKVVRIMNFGAFVELAPNKDGMVHISKLSDKRVEKVEDAVNIG 121

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           D V V++L+ D  G+I LSMK  D +    +
Sbjct: 122 DEVTVRVLEVDKMGRINLSMKPGDMDPNVDV 152


>gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
 gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
          Length = 251

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 95/249 (38%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G  +   GS L   GDT+ +   ++             G+   
Sbjct: 3   RADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASVTDG----VPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    T+ +  +
Sbjct: 59  WLTAEYAMLPSATNTRSDRESVRGRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              PIS  VA +++G+V    D  + 
Sbjct: 119 VIQADGGTRTAAITGAYVALADAVTWLAAHNRLADPKPISCQVAAVSVGVV----DGRVR 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +    S   +   L  A  G   +    
Sbjct: 175 LDLPYEEDSRAEVDTNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAGIATLATLQ 234

Query: 536 SKVLSESRL 544
           ++ L+    
Sbjct: 235 AEALAAPYP 243



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 84/240 (35%), Gaps = 35/240 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++  G   +   G+VL  +G+T VL        +   + G     LT  Y     A 
Sbjct: 13  RPVRITRG-FQKHPAGSVLVEFGDTKVLCAASVTDGVPRWRKGSGLGWLTAEYAMLPSAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
                    R  R       ISR+I RS+R     K    N   +  +V+Q D       
Sbjct: 72  NTRSDRESVR-GRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL  +              P    V    V  ++G+  L+ P  ++ +  +D
Sbjct: 129 AAITGAYVALADAVTWLAAHNRLADPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVD 188

Query: 176 LFVSGTQDAVLM-VELEANQL-----SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
             V  T    L+ V+  A        + D +LD+ + G       I  ++ L       P
Sbjct: 189 TNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAG-------IATLATLQAEALAAP 241


>gi|323527036|ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001]
 gi|323384038|gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 91/248 (36%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTDTTQRPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ETVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  D              PIS  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVSKLLAAGRIESSPISDFVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S + M   L  A  G   
Sbjct: 173 DGVPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASSGIAT 232

Query: 531 ILNEMSKV 538
           +  +    
Sbjct: 233 LTAKQKAA 240



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     ++      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A S  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVSKLLAAGRIESSPISDFVAAISVGVYDGVPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPIVIDSK 235
            ++G              +      + + F  +E   +++  S  +A + AK+   ++ +
Sbjct: 195 VMTG----------AGGFVEIQGTAEGVPFSRDEMNALLDLASSGIATLTAKQKAALEYR 244


>gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1]
 gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1]
          Length = 252

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R IS   G  ++  GS+L   G+T+ +   +L     E     L G  R
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLT----EGVPRWLKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL +A               P+   +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISEN 515
            + D+   ED     D  V  T SG    +Q   +      +
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRD 224



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 25/193 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  ++Q++G+ L  +G T VL T      +     G+    +T  Y     A 
Sbjct: 22  RPISITRGW-SKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVTAEYAMLPRAT 80

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 81  NTRSDRESVK-GKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQADGG--TRT 137

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P    +    V  I+G  +L+    ED   + 
Sbjct: 138 AAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGIIDGVPMLDLPYVEDVRAET 197

Query: 173 SLDLFVSGTQDAV 185
            +++ V+G+   V
Sbjct: 198 DMNVVVTGSGKFV 210


>gi|239982007|ref|ZP_04704531.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074]
          Length = 241

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 26/223 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R ++ +    +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  VA +++G+V        
Sbjct: 119 VLQADGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTP---- 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIM 517
           L D+  +ED     D  V  T  G    +Q   +        +
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRTEL 217



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 26/201 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RPL +E    ++ ++G+VL  +G+T VL T  +   +   + G     +T  Y     A 
Sbjct: 13  RPLTIER-SWSKHAEGSVLVAFGDTKVLCTASFTEGVPRWRKGSGEGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  +    +L+   +ED   + 
Sbjct: 129 AAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEAN 193
            +++  +G     + V+  A 
Sbjct: 189 DMNVVCTG-DGRFVEVQGTAE 208


>gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2]
 gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2]
          Length = 237

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I  + G+++   GS L   G+T  +   T+    +++    L  T  
Sbjct: 1   MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSATI----EDKAPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G  + R     RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       L+ AGV    P+   VA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAMNKLLKAGVIVSDPMIDHVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  G +  +QM  +    S   M   L  A+ G   ++   
Sbjct: 173 LDLDYAEDSAAGTDGNFILTGRGRLIEVQMSAEGATFSRAEMGELLDLAEAGAADLVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 78/230 (33%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           RP+ +ETG + + ++G+ L   GET VL +   +           L   T  Y     A 
Sbjct: 12  RPIVIETGVM-KHAEGSCLIKMGETHVLCSATIEDKAPPFLKNTGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + T     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 71  N----SRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG- 172
               S+     AL L            S  P    V         GQ VL+    ED   
Sbjct: 125 TRCASITGGWVALRLAMNKLLKAGVIVSD-PMIDHVAAVSCGIYAGQPVLDLDYAEDSAA 183

Query: 173 --SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
               +  ++G    + + +  E    S   + + +         ++ A  
Sbjct: 184 GTDGNFILTGRGRLIEVQMSAEGATFSRAEMGELLDLAEAGAADLVAAQK 233


>gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
 gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
          Length = 282

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 107/254 (42%), Gaps = 24/254 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R +      ++   GS L   GDT+ I   ++    D++       +   
Sbjct: 26  RIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASV----DDKVPPFKKNSGEG 81

Query: 373 DFMMHYNFLPCATGEVSRMGAPS----RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +TG  ++          R     RL  RA+  V+   A     + I  +
Sbjct: 82  WVTAEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCD 141

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A++DA            +PI+  VA +++G++ D +    + 
Sbjct: 142 VIQADGGTRTASITGAFVAMVDACKKLVEDGVIEKIPITDMVAAVSVGIIGDEE----ML 197

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  T SG    +Q   +      + +   L  A+ G   +++   
Sbjct: 198 DLCYGEDSNAVVDMNVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISIQK 257

Query: 537 KVLSESRLQLGEFT 550
            VL +   ++G  T
Sbjct: 258 DVLGQVSNEIGRVT 271



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 26/251 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+    I + ++G+VL   G+T V+ T   D  +           +T  Y     + 
Sbjct: 36  RKVKITRNYI-KHAEGSVLIEMGDTKVICTASVDDKVPPFKKNSGEGWVTAEYSMLPRST 94

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G      + +  +       I R+I R++R + +     E  +I   +V+Q D       
Sbjct: 95  GVRNQRDISK-LKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCDVIQADGG--TRT 151

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A+           ++  +P    V    V  I  + +L+    ED      +
Sbjct: 152 ASITGAFVAMVDACKKLVEDGVIEKIPITDMVAAVSVGIIGDEEMLDLCYGEDSNAVVDM 211

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE--PIV 231
           ++ ++ + + + +    E +    D +   +       K +I     +    + E   + 
Sbjct: 212 NVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISIQKDVLGQVSNEIGRVT 271

Query: 232 IDSKDFSKLEE 242
            D K +S  +E
Sbjct: 272 KDEKVYSSDKE 282


>gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015]
 gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015]
          Length = 240

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +RD+           GS L   G+T+ I   ++    +E+    L G  + 
Sbjct: 4   RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASV----EERVPPFLKGQGQG 59

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G  S R     RL  R++   +   A     + +  +
Sbjct: 60  WVTAEYGMLPRSTGSRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL D           +  P+   VA I++G+     +   + 
Sbjct: 120 VIQADGGTRTASITGAFVALTDAVNQLINDGKLSKSPLLGQVASISVGIY----EGTPVL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D+G    +Q   +        +   L  A +G   +     
Sbjct: 176 DLDYPEDSNAETDMNVVMNDAGHFIEVQGTAEGHAFRREELNQLLDLADKGIRELFEVQK 235

Query: 537 KVLSE 541
             L++
Sbjct: 236 AALAK 240



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 27/227 (11%)

Query: 22  RIARQ----SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIP 74
           R+ RQ    ++G+VL  +G T V+ T   +  +     GQ    +T  Y     + G   
Sbjct: 17  RLTRQYTCHAEGSVLVEFGNTKVICTASVEERVPPFLKGQGQGWVTAEYGMLPRSTGSRM 76

Query: 75  GGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMV 132
           G    R  + +     I R+I RS+R         E Q+    +V+Q D        S+ 
Sbjct: 77  GREAAR-GKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCDVIQADGG--TRTASIT 133

Query: 133 AASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFV 178
            A  AL            LS  P  G V    V    G  VL+   P     +  +++ +
Sbjct: 134 GAFVALTDAVNQLINDGKLSKSPLLGQVASISVGIYEGTPVLDLDYPEDSNAETDMNVVM 193

Query: 179 SGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +     + +    E +    + +   +       + + E        
Sbjct: 194 NDAGHFIEVQGTAEGHAFRREELNQLLDLADKGIRELFEVQKAALAK 240


>gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78]
 gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78]
          Length = 241

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D               VP+   V+ +++G+V    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIV----DSVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 175 YLDLRYEEDVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAAL 234

Query: 535 MSKV 538
             + 
Sbjct: 235 QREA 238



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T  +   +   + G     +T  Y     A 
Sbjct: 13  RPVSIERGW-SKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +              +P    V    V  ++    L+ R +ED   + 
Sbjct: 129 AAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEANQLS 196
            +++  +G     + V+  A    
Sbjct: 189 DMNVVRTG-DGRFVEVQGTAEAAP 211


>gi|296114411|ref|ZP_06833065.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
 gi|295979172|gb|EFG85896.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
          Length = 242

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S Q G  +   GS+L   G T+ +   ++ +R        L G  +
Sbjct: 1   MRPSGRAIDALRPVSIQTGFARHAEGSALIRMGGTEVLCAASIESR----VPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G    R     RL  RA+   +   A    ++ +  
Sbjct: 57  GWVTAEYGMLPRATHSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL  A            +PI+  VA ++ GL   G     +
Sbjct: 117 DVLNADGGTRCAAITGAWVALRLALDGLVRANVIPALPITAQVAAVSCGLTGAG----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T+  GI  +Q   +    S+      ++ A+ G   +    
Sbjct: 173 LDLDYAEDSNAVADANFVLTETGGIVEIQGTAEQAPFSQEQFNELMRLAQVGTAQLFEIQ 232

Query: 536 SKVLSES 542
              ++++
Sbjct: 233 RDAVAQA 239



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 75/233 (32%), Gaps = 26/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ ++TG  AR ++G+ L   G T VL     +  +     G+    +T  Y     A 
Sbjct: 12  RPVSIQTG-FARHAEGSALIRMGGTEVLCAASIESRVPPFLRGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + +       I R+I R++R         E  +    +V+  D       
Sbjct: 71  -HSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDCDVLNADGG--TRC 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSL 174
            ++  A  AL L+            LP    V            VL+    ED       
Sbjct: 128 AAITGAWVALRLALDGLVRANVIPALPITAQVAAVSCGLTGAGAVLDLDYAEDSNAVADA 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           +  ++ T   ++ ++  A Q   S++   + +         + E         
Sbjct: 188 NFVLTET-GGIVEIQGTAEQAPFSQEQFNELMRLAQVGTAQLFEIQRDAVAQA 239


>gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 244

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  E +R +S   G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D                P++  V+ +++G+V        
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIV----GGAP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGR 528
           L D+  +ED     D  V  T  G    +Q   +        +   L  A  G 
Sbjct: 175 LLDLCYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVAGC 228



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ L  G  ++ ++G+VL  +G+T VL T  +   +   + G     +T  Y     A 
Sbjct: 13  RPVSLARGW-SKHAEGSVLVAFGDTRVLCTASFTEGVPRWRKGSGEGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       R       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  N-TRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAAL--MLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL   +S             P    V    V  + G  +L+   +ED +   
Sbjct: 129 AAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAPLLDLCYEEDVRADT 188

Query: 175 DLFVSGTQDA-VLMVELEANQ 194
           D+ V  T D   + V+  A  
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEA 209


>gi|312110014|ref|YP_003988330.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
 gi|311215115|gb|ADP73719.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 109/252 (43%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+++ +R +  +   ++   GS     GDT+ I   ++    D++    + G  +
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASI----DDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P++  +A  ++G+     +  I+
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFAKLVEEKKLDELPVNDFLAATSVGI---DPEHGII 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T +G    +Q   +    S   +   L  A+ G   +++  
Sbjct: 174 LDLNYTEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQ 233

Query: 536 SKVLSESRLQLG 547
            K L E   Q+ 
Sbjct: 234 RKTLGELAAQID 245



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 28/219 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+V  T G+T V+ T   D  +     G     +T  Y     A  +       + 
Sbjct: 22  KHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWITAEYAMLPRATEQRNVRESSK- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R + +     E    +  +V+Q D        S+  A  A++
Sbjct: 81  GKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQADGG--TRTASITGAYVAMV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+    ED   +  +++ ++G   
Sbjct: 139 LAFAKLVEEKKLDELPVNDFLAATSVG-IDPEHGIILDLNYTEDARAEVDMNVVMTG-AG 196

Query: 184 AVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
             + ++    + +   + + + +       + +I+   K
Sbjct: 197 RFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRK 235


>gi|126652649|ref|ZP_01724810.1| ribonuclease PH [Bacillus sp. B14905]
 gi|126590498|gb|EAZ84616.1| ribonuclease PH [Bacillus sp. B14905]
          Length = 248

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 23/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R +      L    GS L   G+T+ I   T+    +++    L G  + 
Sbjct: 3   RFDGRMADELRPVKMVGEYLLHPEGSVLIQVGNTKVICTATI----EDKVPGFLRGQGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT + +      G  + R +   RL  RA+  V+   A    T+ I  +
Sbjct: 59  WITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+  A             P++  +A  ++G+V++      + 
Sbjct: 119 VIQADGGTRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFLAATSVGIVEEQG---AVL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +D  +  T +G    +Q   +    S   +   L   ++G   ++    
Sbjct: 176 DLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNDLLALGEKGIQQLVELQK 235

Query: 537 KVLSES 542
             L+E 
Sbjct: 236 TALAEQ 241



 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+  G      +G+VL   G T V+ T   +  +     GQ    +T  Y     A 
Sbjct: 13  RPVKM-VGEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +     + I R+I R++R +       E    +  +V+Q D       
Sbjct: 72  AQRTPRESSR-GKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------GLPF-EGPV----VGAQVDYINGQ-YVLNPRLDED---QGS 173
            S+  A  A+  +        PF + PV        V  +  Q  VL+    ED      
Sbjct: 129 ASITGAFVAMTQAIAKFAEEKPFVKFPVTDFLAATSVGIVEEQGAVLDLNYVEDVAAAVD 188

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G     + ++    + +   + + D +  G    + ++E        
Sbjct: 189 MNIVMTG-AGRFVELQGTGEEATFSREELNDLLALGEKGIQQLVELQKTALAE 240


>gi|254421303|ref|ZP_05035021.1| ribonuclease PH [Synechococcus sp. PCC 7335]
 gi|196188792|gb|EDX83756.1| ribonuclease PH [Synechococcus sp. PCC 7335]
          Length = 241

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 22/244 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R    +    Q + GS L   G+T+ +   ++     E     L  + + 
Sbjct: 5   RPDQRQPDQLRPFKFERQFTQYSAGSVLAHCGNTRVLCTASV----LEGVPRFLKDSGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T           S R     RL  R++   L   A    T+ I +++ 
Sbjct: 61  WLTAEYRMLPGSTQTRKSREFMKLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +   ++ G+ +AL D              P+   +A  ++GL+ +GD F    D+
Sbjct: 121 QADGGTRTTSITGAYVALEDAIAHLIKTNELTTSPLRHQIAATSVGLI-EGDPF---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   +      +Q   + G  + + +   L+ A++G   ++      
Sbjct: 177 NYPEDFAADIDFNVVMNEKLEFIEVQGTAEAGSFTRSQLNAMLEYAEKGISQLMQIQKAT 236

Query: 539 LSES 542
           LSES
Sbjct: 237 LSES 240



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 78/230 (33%), Gaps = 34/230 (14%)

Query: 14  RPLKLETGRIARQ----SDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQER 66
           RP K E     RQ    S G+VLA  G T VL T  V +   +  +D     LT  Y+  
Sbjct: 15  RPFKFE-----RQFTQYSAGSVLAHCGNTRVLCTASVLEGVPRFLKDSGQGWLTAEYRML 69

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
               G       R   + +     I R+I RS+R         E    +  +V+Q D   
Sbjct: 70  P---GSTQTRKSREFMKLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVLQADGG- 125

Query: 125 SPHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QG 172
                S+  A  AL   ++ L         P    +    V  I G   L+    ED   
Sbjct: 126 -TRTTSITGAYVALEDAIAHLIKTNELTTSPLRHQIAATSVGLIEGDPFLDLNYPEDFAA 184

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            +D  V   +    + V+   EA   +   +   + +       +++   
Sbjct: 185 DIDFNVVMNEKLEFIEVQGTAEAGSFTRSQLNAMLEYAEKGISQLMQIQK 234


>gi|295399427|ref|ZP_06809409.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978893|gb|EFG54489.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
          Length = 256

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 109/252 (43%), Gaps = 23/252 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+++ +R +  +   ++   GS     GDT+ I   ++    D++    + G  +
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASI----DDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P++  +A  ++G+     +  I+
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFAKLVEEKKLDELPVNDFLAATSVGI---DPEHGII 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  V  T +G    +Q   +    S   +   L  A+ G   +++  
Sbjct: 174 LDLNYTEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQ 233

Query: 536 SKVLSESRLQLG 547
            K L E   Q+ 
Sbjct: 234 RKTLGELAAQID 245



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 28/219 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+V  T G+T V+ T   D  +     G     +T  Y     A  +       + 
Sbjct: 22  KHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWITAEYAMLPRATEQRNVRESSK- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R + +     E    +  +V+Q D        S+  A  A++
Sbjct: 81  GKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQADGG--TRTASITGAYVAMV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+    ED   +  +++ ++G   
Sbjct: 139 LAFAKLVEEKKLDELPVNDFLAATSVG-IDPEHGIILDLNYTEDARAEVDMNVVMTG-AG 196

Query: 184 AVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
             + ++    + +   + + + +       + +I+   K
Sbjct: 197 RFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRK 235


>gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328]
 gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328]
          Length = 242

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +  ++   Q    S L   G+TQ +  VT+           L  T + 
Sbjct: 6   RPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPG----VPRFLQDTGKG 61

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   +   A    T+ + +++ 
Sbjct: 62  WLTAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVL 121

Query: 431 ESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A             PI   +A I++G++        L D+
Sbjct: 122 QADAGTRTTSITGGFVALAHAFNKMVKQGQLKRSPIIHQIAAISVGMMHGEP----LLDL 177

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D  GI  +Q   +   ++ N +   L  A++G   +     +V
Sbjct: 178 NYQEDVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 237



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 34/232 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP++ E     + +  +VLA  G T VL TV     ++ G   F        LT  Y+  
Sbjct: 16  RPVQFEL-DYTQFAAASVLAKSGNTQVLCTVT----IQPGVPRFLQDTGKGWLTAEYRML 70

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
               G  P    R   + +     I R+I RS+R         E  V    +V+Q D   
Sbjct: 71  P---GATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQADAG- 126

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QG 172
                S+     AL            L   P    +    V  ++G+ +L+    ED   
Sbjct: 127 -TRTTSITGGFVALAHAFNKMVKQGQLKRSPIIHQIAAISVGMMHGEPLLDLNYQEDVAA 185

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +D  V    D  ++ ++   EA  L+ + +   + +       + +   ++
Sbjct: 186 DIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 237


>gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076]
 gi|122251374|sp|Q01NZ9|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076]
          Length = 238

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R +  +R +    G L    GS+L   G+T  +   T+    ++     L  T +
Sbjct: 1   MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATI----EDTVPPFLRNTGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +      G PS R     RL  R++   +  ++    TL I  
Sbjct: 57  GWVTAEYSMLPRATAKRTPREVTKGRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+                PI   VA  ++GLV      I +
Sbjct: 117 DVIQADGGTRTASITGAFVAMALAFRQLIEYRALKANPIRDYVAATSVGLV----GGIPM 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T  G    +Q   +     +  M    + A+ G   ++   
Sbjct: 173 LDLCYEEDSQADVDMNVVMTGGGKFVEVQATAEHSAFDDAQMAELTELARTGIAQLVRMQ 232

Query: 536 SKVLS 540
            +++ 
Sbjct: 233 KEIIE 237



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+++ TG +   ++G+ L   G T VL     + ++           +T  Y     A 
Sbjct: 12  RPVQITTGCL-MTAEGSALIKVGNTHVLCAATIEDTVPPFLRNTGKGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            K     + +  RP+     I R+I RS+R         E  +I   +V+Q D       
Sbjct: 71  AKRTPREVTK-GRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A+ L+             P    V    V  + G  +L+   +ED      +
Sbjct: 128 ASITGAFVAMALAFRQLIEYRALKANPIRDYVAATSVGLVGGIPMLDLCYEEDSQADVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLSEDV--VLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++G     + V+  A   + D   + +           ++    ++ +
Sbjct: 188 NVVMTG-GGKFVEVQATAEHSAFDDAQMAELTELARTGIAQLVRMQKEIIE 237


>gi|302391286|ref|YP_003827106.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
 gi|302203363|gb|ADL12041.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
          Length = 251

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 103/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGRD + +R+++      +   GS L   GDT+ I   ++    +E     L    +
Sbjct: 1   MRVDGRDRDELREVTITRDFTKYAEGSILISTGDTKVICNASV----EESVPYFLRDQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G  S R     RL  RA+  V+        T+ +  
Sbjct: 57  GWITGEYAMLPRATESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+DA            +P+   +A  ++G++    D    
Sbjct: 117 DVIQADGGTRTASITGAFVALIDALDYLLEKDKIDEMPVKSFIAATSVGII----DGAPA 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  T+ G I  +Q   +    ++  +   ++  ++G   ++   
Sbjct: 173 LDLCYKEDSSAQVDLNLVMTEEGRIIEIQGTGEENPFTQQELDKLVELGEKGIKELIRYQ 232

Query: 536 SKVLSE 541
            + L +
Sbjct: 233 KEALGD 238



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + + T    + ++G++L + G+T V+     + S+      Q    +T  Y     A 
Sbjct: 12  REVTI-TRDFTKYAEGSILISTGDTKVICNASVEESVPYFLRDQGQGWITGEYAMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
            +        + + +     I R+I R++R +       E  +    +V+Q D       
Sbjct: 71  -ESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL+           +  +P +  +    V  I+G   L+    ED      L
Sbjct: 128 ASITGAFVALIDALDYLLEKDKIDEMPVKSFIAATSVGIIDGAPALDLCYKEDSSAQVDL 187

Query: 175 DLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
           +L ++  +  ++ ++    +   ++  +   +  G    K +I    + 
Sbjct: 188 NLVMT-EEGRIIEIQGTGEENPFTQQELDKLVELGEKGIKELIRYQKEA 235


>gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5]
 gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5]
          Length = 244

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 24/231 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R    +R I+      +   GS L   G+T  +   T+           L G        
Sbjct: 5   RAPHELRPITITRNYTKYAEGSVLIAMGETIVLCNATVQKT----VPRFLIGKDSGWVTA 60

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ LP AT   +R     G PS R +   RL  R++  ++   A   YT+ I  ++ ++
Sbjct: 61  EYSMLPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQA 120

Query: 433 DGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A+V G+ +AL D              P+   VA I++G+  +      L+D+  
Sbjct: 121 DGGTRCASVNGAFIALADAVDSMLAAGMIGESPLRSTVAAISVGIFNNWP----LADLDY 176

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            ED    +D  V  T  G    +Q   +    S     + L+ A  G   I
Sbjct: 177 LEDSQAMVDMNVVATGKGEFVEIQGTGESRPFSRKDHDILLELALDGIGQI 227



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL   GET+VL      +++     G+D   +T  Y     A 
Sbjct: 11  RPITI-TRNYTKYAEGSVLIAMGETIVLCNATVQKTVPRFLIGKDSGWVTAEYSMLPRAT 69

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESS 125
                   RRE    RP+   + I R+I RS+R +            +  +V+Q D    
Sbjct: 70  DV----RNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQADGG-- 123

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               S+  A  AL            +   P    V    V   N   + +    ED    
Sbjct: 124 TRCASVNGAFIALADAVDSMLAAGMIGESPLRSTVAAISVGIFNNWPLADLDYLEDSQAM 183

Query: 172 GSLDLFVSGTQDAV 185
             +++  +G  + V
Sbjct: 184 VDMNVVATGKGEFV 197


>gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Oceanobacter sp. RED65]
 gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65]
          Length = 238

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +RD+       +   GS L   GDT+ I   ++    + +    L G  +
Sbjct: 1   MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASV----ENKVPPFLRGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G    R +   RL  R++   +   A    ++ I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+   +A +++G+     +   +
Sbjct: 117 DVIQADGGTRCASITGACVALADAINSMIEAGTLKASPLKYMIAAVSVGVY----EGQAI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D+ G   +Q   +        +   L  AK+G   I    
Sbjct: 173 LDLDYPEDSNAETDLNVIMADNGGFVEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEIQ 232

Query: 536 SK 537
            +
Sbjct: 233 KQ 234



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 28/214 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+     +  +     GQ    +T  Y     + G        + 
Sbjct: 22  KHAEGSVLVEVGDTKVICNASVENKVPPFLRGQGQGWVTAEYGMLPRSTGSRMIREAAK- 80

Query: 82  SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            +     + ISR+I RS+R         +N   +  +V+Q D        S+  A  AL 
Sbjct: 81  GKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDCDVIQADGG--TRCASITGACVALA 138

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAV 185
                      L   P +  +    V    GQ +L+   P     +  L+  +       
Sbjct: 139 DAINSMIEAGTLKASPLKYMIAAVSVGVYEGQAILDLDYPEDSNAETDLN-VIMADNGGF 197

Query: 186 LMVELEAN---QLSEDV--VLDAIIFGHNECKPV 214
           + ++  A       E++  +LD    G  E   +
Sbjct: 198 VEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEI 231


>gi|239827937|ref|YP_002950561.1| ribonuclease PH [Geobacillus sp. WCH70]
 gi|259494121|sp|C5D5M7|RNPH_GEOSW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239808230|gb|ACS25295.1| ribonuclease PH [Geobacillus sp. WCH70]
          Length = 255

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 107/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+++ +R +  +   ++   GS     GDT+ I   ++    D++    + G  +
Sbjct: 1   MRIDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASI----DDKVPPFMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT + +      G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATEQRNVRESSKGKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++ A            +P++  +A  ++G+     +  I+
Sbjct: 117 DVIQADGGTRTASITGAYVAMVLAFAKLMEEKKLDELPVNDFLAATSVGI---DPEHGII 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T +G    +Q   +    S   +   L  A+ G   +++  
Sbjct: 174 LDLNYAEDARAEVDMNIVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQ 233

Query: 536 SKVLSE 541
            K L E
Sbjct: 234 RKTLGE 239



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 28/219 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+V  T G+T V+ T   D  +     G     +T  Y     A  +       + 
Sbjct: 22  KHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWITAEYAMLPRATEQRNVRESSK- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I R++R + +     E    +  +V+Q D        S+  A  A++
Sbjct: 81  GKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQADGG--TRTASITGAYVAMV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQY--VLNPRLDED---QGSLDLFVSGTQD 183
           L+            LP    +    V  I+ ++  +L+    ED   +  +++ ++G   
Sbjct: 139 LAFAKLMEEKKLDELPVNDFLAATSVG-IDPEHGIILDLNYAEDARAEVDMNIVMTG-AG 196

Query: 184 AVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
             + ++    + +   + + + +       + +I+   K
Sbjct: 197 RFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRK 235


>gi|330815847|ref|YP_004359552.1| Ribonuclease PH [Burkholderia gladioli BSR3]
 gi|327368240|gb|AEA59596.1| Ribonuclease PH [Burkholderia gladioli BSR3]
          Length = 243

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 24/251 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +   R  GR ++ +R++       +   GS L   GDT+ I   ++     E+  + L
Sbjct: 1   MTNSSSRPSGRPADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASV----VERVPEFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V+        T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +A+ DA             PI+  VA I++G+ +   
Sbjct: 117 IHIDCDVIQADGGTRTASITGAFVAVQDAVAKLIAAGKLASSPITDSVAAISVGVYQGTP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+   ED     D  V  T   G+  +Q   +    + + M   L  A++G   
Sbjct: 177 ----VLDLDYAEDSRCDTDMNVVMTGKGGLVEVQGTAEGVPFTRDEMNALLDLAQKGIGE 232

Query: 531 ILNEMSKVLSE 541
           ++      L +
Sbjct: 233 LIALQKAALGD 243



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 82/227 (36%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R ++L T    + ++G+VL  +G+T V+ T  V +R  +  +D     LT  Y     A 
Sbjct: 17  REVRL-TRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + T     I R+I R++R +    +       +  +V+Q D       
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGARTIHIDCDVIQADGG--TRT 132

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A+            L+  P    V    V    G  VL+    ED      +
Sbjct: 133 ASITGAFVAVQDAVAKLIAAGKLASSPITDSVAAISVGVYQGTPVLDLDYAEDSRCDTDM 192

Query: 175 DLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++G +  ++ V+  A  +  + D +   +         +I    
Sbjct: 193 NVVMTG-KGGLVEVQGTAEGVPFTRDEMNALLDLAQKGIGELIALQK 238


>gi|118496994|ref|YP_898044.1| ribonuclease PH [Francisella tularensis subsp. novicida U112]
 gi|194324228|ref|ZP_03058002.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
 gi|166228281|sp|A0Q4X5|RNPH_FRATN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118422900|gb|ABK89290.1| ribonuclease PH [Francisella novicida U112]
 gi|194321675|gb|EDX19159.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
          Length = 235

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++     E   DS      
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPEFKKDS----GE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  TA    T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V    + GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLAT---VVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T   V      K       LT  Y     +            
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVAGVPEFKKDSGEGWLTAEYGMLPRST-HTRMDREAAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +               P    V    V   N + VL+   DED   +  +++ ++ +  
Sbjct: 139 DAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SNG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24]
 gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24]
          Length = 252

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 26/250 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R IS   G  ++  GS+L   G+T+ +   +L     E     L G  R
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLT----EGVPRWLKGEGR 66

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  
Sbjct: 67  GWVTAEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDC 126

Query: 428 EITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL +A               P+   +A +++G++    D +
Sbjct: 127 DVLQADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGII----DGV 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  V  T SG    +Q   +      + +   L  A  G   +  
Sbjct: 183 PMLDLPYVEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTEQLAA 242

Query: 534 EMSKVLSESR 543
              + L+E+ 
Sbjct: 243 IQRETLAEAP 252



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 25/193 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  ++Q++G+ L  +G T VL T      +     G+    +T  Y     A 
Sbjct: 22  RPISITRGW-SKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVTAEYAMLPRAT 80

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 81  N-TRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQADGG--TRT 137

Query: 129 VSMVAASAALM-----------LS--GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL            +S    P    +    V  I+G  +L+    ED   + 
Sbjct: 138 AAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGIIDGVPMLDLPYVEDVRAET 197

Query: 173 SLDLFVSGTQDAV 185
            +++ V+G+   V
Sbjct: 198 DMNVVVTGSGKFV 210


>gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
 gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR  + +R I       +   GS L + GDTQ I   ++    +E     L G  R
Sbjct: 9   IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASI----EESVPPFLRGRGR 64

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R+I       A    TLR+  
Sbjct: 65  GWLTAEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDC 124

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A  DA            VP+   VA I++G+++     + +
Sbjct: 125 DVIQADGGTRTASISGVMIAAYDAFSLMVEEGLIEKVPLRHFVAAISVGVIQ----GVPM 180

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G    +Q   + G  S +++   L  A++G   +++  
Sbjct: 181 LDLDYQEDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQ 240

Query: 536 SKV 538
            +V
Sbjct: 241 KRV 243



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 19/215 (8%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T   + S+     G+    LT  Y     +            
Sbjct: 30  KYAEGSVLTVFGDTQVICTASIEESVPPFLRGRGRGWLTAEYGMLPRST-HTRMEREAAR 88

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVS--MVAASAA 137
            R +     I R+I RSIR  F      E   ++  +V+Q D  +    +S  M+AA  A
Sbjct: 89  GRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDCDVIQADGGTRTASISGVMIAAYDA 148

Query: 138 LM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV-L 186
                    +  +P    V    V  I G  +L+    ED      +++ ++   D V +
Sbjct: 149 FSLMVEEGLIEKVPLRHFVAAISVGVIQGVPMLDLDYQEDSSCDTDMNVVMTEAGDFVEI 208

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
               E    S  ++ + +         +I    ++
Sbjct: 209 QGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQKRV 243


>gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter sp. FRC-32]
 gi|254808588|sp|B9M3E3|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter sp. FRC-32]
          Length = 238

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR   ++R++      ++   GS L   GDT+ I   ++ +         L G   
Sbjct: 1   MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESS----VPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R     RL  R++  V+  +     ++ I  
Sbjct: 57  GWVTAEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           + +PI + VA +++G+V      + +
Sbjct: 117 DVIQADGGTRTASITGAYVALCDALQGLVAKGELSSLPIREAVAAVSVGIV----GGVAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D     T S     +Q   +    +   M      A  G   +    
Sbjct: 173 LDLNYVEDSAAEVDMNFVMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQ 232

Query: 536 SKV 538
             V
Sbjct: 233 QAV 235



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++    I + ++G+VL  +G+T V+ T   + S+     G+    +T  Y     A 
Sbjct: 12  REVRITRNYI-KHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGTGWVTAEYSMLPRAT 70

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             + P    +   +       I R+I RS+R +       E  +I   +V+Q D      
Sbjct: 71  HSRSPREAAK--GKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            LS LP    V    V  + G  VL+    ED   +  
Sbjct: 127 TASITGAYVALCDALQGLVAKGELSSLPIREAVAAVSVGIVGGVAVLDLNYVEDSAAEVD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++  ++ +   V +    EA   + + +        +  K + +    +  
Sbjct: 187 MNFVMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQQAVLA 237


>gi|254303318|ref|ZP_04970676.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323510|gb|EDK88760.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 434

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 115/312 (36%), Gaps = 30/312 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  +  R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRKFDEERKIKIIKNVNIYAEGSVLIEVGNTKVICTASV----SDKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +   A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +AL                P+   VA I++G +    D  ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLQEEILEENPLISNVAAISVGKI----DSNLMV 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G    +Q   +    +   +   L  A+     ++    
Sbjct: 175 DLKYSEDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVKI 595
           +++++    L  F        I      + I  G K I+ +  + G ++  + +DG    
Sbjct: 235 RIINQ--EDLKIFLATANKHKIDE---ISDIFSGIKNIKILSIKDGIEIPEVIEDGKTFE 289

Query: 596 ASSSLAEIEAAR 607
            +S    +E A+
Sbjct: 290 DNSKKKAVEIAK 301



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 19/213 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +     G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  I+   +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLQEEILEENPLISNVAAISVGKIDSNLMVDLKYSEDSAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
              +   +   +   +    N  K +IE   ++
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIELQDRI 236


>gi|118580726|ref|YP_901976.1| ribonuclease PH [Pelobacter propionicus DSM 2379]
 gi|118503436|gb|ABK99918.1| RNAse PH [Pelobacter propionicus DSM 2379]
          Length = 239

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR +GRDS  +R ++      +   G+ L   GDT+ I   ++    +E     L G   
Sbjct: 2   VRKNGRDSRALRPVAITRNFTKYAEGAVLVEFGDTRVICTASV----EESVPSFLRGRGT 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G  S R +   RL  R++  V    A    ++ +  
Sbjct: 58  GWVTAEYSMLPRATHTRSSREASKGKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D             +P+ + VA +++G+V        L
Sbjct: 118 DVLQADGGTRTASITGAYVALADALATLKQRGLLERIPLREAVAAVSVGIVGGES----L 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED    +D     T S     +Q   ++   +   M      A  G   + +  
Sbjct: 174 LDLDYDEDSSAEVDMNFVMTSSQRFVEVQGTAEVEPFTLEQMDAMRSLAMDGIQCLFDLQ 233

Query: 536 SKV 538
            + 
Sbjct: 234 REA 236



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 23/219 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++GAVL  +G+T V+ T   + S+     G+    +T  Y     A           +
Sbjct: 23  KYAEGAVLVEFGDTRVICTASVEESVPSFLRGRGTGWVTAEYSMLPRAT-HTRSSREASK 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +   + I R+I RS+R +       E    +  +V+Q D        S+  A  AL 
Sbjct: 82  GKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLDCDVLQADGG--TRTASITGAYVALA 139

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
                      L  +P    V    V  + G+ +L+   DED      ++  ++ +Q  V
Sbjct: 140 DALATLKQRGLLERIPLREAVAAVSVGIVGGESLLDLDYDEDSSAEVDMNFVMTSSQRFV 199

Query: 186 -LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +    E    + + +        +  + + +   +  K
Sbjct: 200 EVQGTAEVEPFTLEQMDAMRSLAMDGIQCLFDLQREALK 238


>gi|62263530|gb|AAX78169.1| unknown protein [synthetic construct]
          Length = 270

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 26/239 (10%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R  GR+++ +R++       +   GS L   GDT+ I   ++              + 
Sbjct: 26  EMRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASV----VAGVPKFKKDSG 81

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP +T          G  S R     RL  RA+   +  TA    T+++ 
Sbjct: 82  EGWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVD 141

Query: 427 SEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +    
Sbjct: 142 CDVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP-- 199

Query: 474 IILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             + D+  DED     D  V    + GI  +Q   +    SE      L  AK+G   I
Sbjct: 200 --VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 256



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     LT  Y     +            
Sbjct: 48  KHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLTAEYGMLPRST-HTRMDREAAR 106

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 107 GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 164

Query: 140 LS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +               P    V    V   N + VL+   DED   +  +++ ++ +  
Sbjct: 165 DAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SNG 223

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 224 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 256


>gi|23099561|ref|NP_693027.1| ribonuclease PH [Oceanobacillus iheyensis HTE831]
 gi|61216060|sp|Q8EPJ5|RNPH_OCEIH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|22777791|dbj|BAC14062.1| ribonuclease PH (tRNA nucleotidyltransferase) [Oceanobacillus
           iheyensis HTE831]
          Length = 244

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 23/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R D R+   +R+I+     +    GS L   G+T+ I   ++    +++    + G  +
Sbjct: 1   MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASI----EDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G  S R +   RL  RA+  V+        T+ I  
Sbjct: 57  GWITAEYAMLPRATAQRNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A             PI   +A I++G++ +G +   +
Sbjct: 117 DVIQADGGTRTASITGAFVAMSLAFAKLVEAKTLKKTPIQDYLAAISVGVLTNGTE---I 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  +  T  G    +Q   +    + N +   L+  + G   ++   
Sbjct: 174 LDLNYEEDSEAAVDMNIVMTGEGEFVEIQGTGEEATFTPNQLQNMLKLGEEGIQQLVKIQ 233

Query: 536 SK 537
            +
Sbjct: 234 KE 235



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 86/233 (36%), Gaps = 27/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + + T  I+   +G+VL   G T V+     +  +     GQ    +T  Y     A 
Sbjct: 12  RNINITTNYISH-PEGSVLIEMGNTKVICNASIEDRVPPFMRGQGKGWITAEYAMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       +  + +   + I R+I R++R +       E    +  +V+Q D       
Sbjct: 71  AQRNIRESSK-GKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVD-YINGQYVLNPRLDED---QGS 173
            S+  A  A+ L+             P +  +    V    NG  +L+   +ED      
Sbjct: 128 ASITGAFVAMSLAFAKLVEAKTLKKTPIQDYLAAISVGVLTNGTEILDLNYEEDSEAAVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++ ++G +   + ++    +   + + + + +  G    + +++   +L   
Sbjct: 188 MNIVMTG-EGEFVEIQGTGEEATFTPNQLQNMLKLGEEGIQQLVKIQKELLAD 239


>gi|254418052|ref|ZP_05031776.1| ribonuclease PH [Brevundimonas sp. BAL3]
 gi|196184229|gb|EDX79205.1| ribonuclease PH [Brevundimonas sp. BAL3]
          Length = 241

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 24/248 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+ +   GS L   G T+ +V  ++    +E     + G  +
Sbjct: 1   MRHSQRTDDQLRPVTIETGVNRYAEGSCLITFGHTKVLVTASV----EETIPGWMRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  + R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVVLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L D GV    PI   VA ++ G+     D + +
Sbjct: 117 DVIQADGGTRTASITGAWVAMASALNYLRDEGVLKSDPILDQVAAVSCGVC----DGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D     T +G I  +Q   +  G S          A+ G   +    
Sbjct: 173 LDLDYEEDSEAEADSNFVLTGAGQIVEVQATGEKRGFSRAEFDRLFSLAEIGCTELFALQ 232

Query: 536 SKVLSESR 543
              L   R
Sbjct: 233 KAALEAVR 240



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 26/200 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +ETG + R ++G+ L T+G T VL T   + ++     G+    +T  Y     A 
Sbjct: 12  RPVTIETG-VNRYAEGSCLITFGHTKVLVTASVEETIPGWMRGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + T     I R+I RS+R +       E QV+   +V+Q D  + 
Sbjct: 71  ----HTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVVLDCDVIQADGGTR 126

Query: 126 PHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
              ++    + A  L+ L         P    V        +G  VL+   +ED   +  
Sbjct: 127 TASITGAWVAMASALNYLRDEGVLKSDPILDQVAAVSCGVCDGVPVLDLDYEEDSEAEAD 186

Query: 174 LDLFVSGTQDAVLMVELEAN 193
            +  ++G    ++ V+    
Sbjct: 187 SNFVLTG-AGQIVEVQATGE 205


>gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG]
 gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF]
 gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
 gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
          Length = 241

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D               VP+   V+ +++G+V    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIV----DSVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 175 YLDLRYEEDVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAAL 234

Query: 535 MSKV 538
             + 
Sbjct: 235 QREA 238



 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T  +   +   + G     +T  Y     A 
Sbjct: 13  RPVSIERGW-SKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +              +P    V    V  ++    L+ R +ED   + 
Sbjct: 129 AAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEANQLS 196
            +++  +G     + V+  A    
Sbjct: 189 DMNVVRTG-DGRFVEVQGTAEAAP 211


>gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
 gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S]
 gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003]
 gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
          Length = 248

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  V     P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            + L +
Sbjct: 234 KETLGD 239



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSETELAELIALGKKGISELIEIQKE 235


>gi|53802880|ref|YP_115411.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
 gi|61215834|sp|Q602N9|RNPH_METCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|53756641|gb|AAU90932.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+      +   GS L   GDT+ I   ++    +E+    L G   
Sbjct: 1   MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASV----EERVPPFLKGKGS 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E +      G    R +   RL  R++   L   A    T+ +  
Sbjct: 57  GWITAEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL+               P+   +A +++G+ +     + +
Sbjct: 117 DVIQADGGTRTASITGGYVALVLAVQRLLKSRKIKTNPVHGQIASVSVGICQ----GVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D+G    +Q   +      + +   L+ A+ G   +L   
Sbjct: 173 LDLDYAEDCDAETDMNVVMNDAGAFIEIQGTAEGHAFRRDELDAMLRLAEAGIADLLLHQ 232

Query: 536 SKVLS 540
            + L 
Sbjct: 233 QEALD 237



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 25/223 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T   +  +     G+    +T  Y     A  +  G    R 
Sbjct: 22  KHAEGSVLVEFGDTRVICTASVEERVPPFLKGKGSGWITAEYGMLPRATHERTGREAAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM 139
            +     + I R+I RS+R   +     E  V    +V+Q D        S+     AL+
Sbjct: 81  GKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDCDVIQADGG--TRTASITGGYVALV 138

Query: 140 LS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
           L+             P  G +    V    G  VL+    ED   +  +++ ++    A 
Sbjct: 139 LAVQRLLKSRKIKTNPVHGQIASVSVGICQGVPVLDLDYAEDCDAETDMNVVMN-DAGAF 197

Query: 186 LMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           + ++   E +    D +   +         ++    +    C 
Sbjct: 198 IEIQGTAEGHAFRRDELDAMLRLAEAGIADLLLHQQEALDGCG 240


>gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988]
          Length = 248

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  V     P+   +A  ++G++ +G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLDEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            + L +
Sbjct: 234 KETLGD 239



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVDYIN-GQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V  ++ G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEAVPFAKFPVKDFLAATSVGVLDEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSETELAELIALGKKGISELIEIQKE 235


>gi|171910497|ref|ZP_02925967.1| ribonuclease PH [Verrucomicrobium spinosum DSM 4136]
          Length = 269

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 114/267 (42%), Gaps = 27/267 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GT 369
            R D R  + +R++S Q+ +     GS L   G+T+ I   T+     E+    +   G 
Sbjct: 2   PRSDQRTPDQLRNVSFQLDIAPHATGSVLVSFGNTKVICAATI----QEEVPRWMKAQGV 57

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP +T +        G    R     RL  R++  V+      P TL I
Sbjct: 58  SGGWLTAEYSMLPYSTLDRKDRDISKGKLDGRSQEIQRLIGRSLRAVVDLEKLGPRTLWI 117

Query: 426 VSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +A       L++ GV    P+ K VA I++G+ ++     
Sbjct: 118 DCDVLQADGGTRTASITGACVASAIAFNRLLEKGVLRQQPLKKKVAAISVGIFRNQ---- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            L D+  +ED    +D  +  T+ G    +Q   +    SE  +   L   K+G + +  
Sbjct: 174 ALLDLCYEEDRDADVDCNLVMTEDGQFVEIQGSGEESTFSEAQLSAMLTLGKKGIVELCK 233

Query: 534 EMSKVLSES-RLQLGEFTPRVEIMAIP 559
             ++V++ + + ++ +  P    +  P
Sbjct: 234 LQAEVINSAVKSKVADPAPASVSLKAP 260



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 85/252 (33%), Gaps = 25/252 (9%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLK-----DGQDFFPLTVNYQERTYAVGKIPGGY 77
           IA  + G+VL ++G T V+        +       G     LT  Y    Y+        
Sbjct: 21  IAPHATGSVLVSFGNTKVICAATIQEEVPRWMKAQGVSGGWLTAEYSMLPYSTLDRKDRD 80

Query: 78  LRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
           + +  +       I R+I RS+R +    K       +  +V+Q D        S+  A 
Sbjct: 81  ISK-GKLDGRSQEIQRLIGRSLRAVVDLEKLGPRTLWIDCDVLQADGG--TRTASITGAC 137

Query: 136 AALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD 183
            A  ++             P +  V    V     Q +L+   +ED+   +D  +  T+D
Sbjct: 138 VASAIAFNRLLEKGVLRQQPLKKKVAAISVGIFRNQALLDLCYEEDRDADVDCNLVMTED 197

Query: 184 A-VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL 240
              + ++    +   SE  +   +  G      + +  +++     K  +   +     L
Sbjct: 198 GQFVEIQGSGEESTFSEAQLSAMLTLGKKGIVELCKLQAEVINSAVKSKVADPAPASVSL 257

Query: 241 EEEMSQMIKEDL 252
           +    +   + +
Sbjct: 258 KAPSLEDAFKKM 269


>gi|330991184|ref|ZP_08315137.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
 gi|329761770|gb|EGG78261.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
          Length = 253

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +  Q G  +   GS+L   G T+ +   ++ TR        L G  +
Sbjct: 12  MRPSGRATDALRPVFIQTGFARHAEGSALIRMGGTEVLCAASVETR----VPSFLRGKGQ 67

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V    A    ++ +  
Sbjct: 68  GWVTAEYGMLPRATHSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDC 127

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL  A            VP+   VA ++ GL ++G     +
Sbjct: 128 DVLNADGGTRCAAITGAWVALRLALETLVRAGTLPAVPLKGQVAAVSCGLTQEG----AV 183

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T D GI  +Q   +    +E      ++ A+ G   +    
Sbjct: 184 LDLDYAEDSTARADSNFVLTADGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQ 243

Query: 536 SKVLSES 542
           +  + E+
Sbjct: 244 TATVEEA 250



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 26/235 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+ ++TG  AR ++G+ L   G T VL    V  R      G+    +T  Y     A 
Sbjct: 23  RPVFIQTG-FARHAEGSALIRMGGTEVLCAASVETRVPSFLRGKGQGWVTAEYGMLPRAT 81

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + R +     I R+I RS+R +       E  +    +V+  D       
Sbjct: 82  -HSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDCDVLNADGG--TRC 138

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL L+            +P +G V            VL+    ED   +   
Sbjct: 139 AAITGAWVALRLALETLVRAGTLPAVPLKGQVAAVSCGLTQEGAVLDLDYAEDSTARADS 198

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +  ++     ++ ++  A Q   +E      +         +    +   +   K
Sbjct: 199 NFVLTA-DGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQTATVEEALK 252


>gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120]
 gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120]
          Length = 248

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++               P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEETPFTKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            + L E
Sbjct: 234 KETLGE 239



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                 PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEETPFTKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSEAELAELIALGKKGISELIEIQKE 235


>gi|170693638|ref|ZP_02884796.1| ribonuclease PH [Burkholderia graminis C4D1M]
 gi|170141420|gb|EDT09590.1| ribonuclease PH [Burkholderia graminis C4D1M]
          Length = 246

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 92/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR +  +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MTDTTQRPSGRLAHQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ETVPSFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  D              PIS  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAAHDAVSKLLAAGRIESSPISDYVAAISVGVY---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D + + D+  DED     D  V  T   G   +Q   +    S + M   L  A  G   
Sbjct: 173 DGLPVLDLDYDEDSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGIAT 232

Query: 531 ILNEMSKV 538
           ++ +  + 
Sbjct: 233 LIAKQKEA 240



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 22/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     ++      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F   K       +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A S  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAAHDAVSKLLAAGRIESSPISDYVAAISVGVYDGLPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            ++G     + ++  A  +  S D +   +    +    +I    +  +   +
Sbjct: 195 VMTG-AGGFVEIQGTAEGVPFSRDEMNALLDLASDGIATLIAKQKEALEYRGE 246


>gi|325524722|gb|EGD02709.1| ribonuclease PH [Burkholderia sp. TJI49]
          Length = 246

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R ++      +   GS L   GDT+ I   ++     E+  + L    + 
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVICTASVA----ERVPEFLRERGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  + R     RL  RA+  V    A  P T+ I  +
Sbjct: 63  WLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D              PI   VA I++G+     +   + 
Sbjct: 123 VIQADGGTRTASITGAFVAAHDAVSKLIAAGKLERSPIVDHVAAISVGVY----EGTPVL 178

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T   G   +Q   +    S   M   L  A+ G   ++    
Sbjct: 179 DLDYAEDSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGELVQLQK 238

Query: 537 KVLSES 542
            VL  +
Sbjct: 239 DVLGAA 244



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 27/217 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T      + +    +    LT  Y     A            
Sbjct: 27  KHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT-HTRSDREAAR 85

Query: 82  SRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
            + T     I R+I R++R +F   +   +    +  +V+Q D        S+  A  A 
Sbjct: 86  GKQTGRTQEIQRLIGRALRAVFDLEALGPRT-IHIDCDVIQADGG--TRTASITGAFVAA 142

Query: 139 --MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              +S L         P    V    V    G  VL+    ED      +++ ++G    
Sbjct: 143 HDAVSKLIAAGKLERSPIVDHVAAISVGVYEGTPVLDLDYAEDSRCDTDMNVVMTG-AGG 201

Query: 185 VLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAIS 219
            + V+  A  +  S   +   +    +    +++   
Sbjct: 202 FVEVQGTAEGVPFSRAEMNALLDLAQSGIGELVQLQK 238


>gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
 gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
          Length = 261

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +    G      GS L   G T+     ++     E       GT   
Sbjct: 4   RLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASVT----EGVPRWRKGTGEG 59

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              PIS  +A +++GLV    D  + 
Sbjct: 120 VLQADGGTRTAAITGAFVALSDAVTWLAASGRLADPQPISCAIAAVSVGLV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +        +   L  A  G   ++   
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDTGTLVEVQGTAEGATFHRKTLDKLLDLAFAGIEQLVVAQ 235

Query: 536 SKVLSESRL 544
            + L+    
Sbjct: 236 REALALPYP 244



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 24/217 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G+T V         +   + G     LT  Y     A          R  +  
Sbjct: 28  GSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTAEYAMLPAATATRNDRESVR-GKLG 86

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR+I RS+R          N   V  +V+Q D        ++  A  AL  +  
Sbjct: 87  GRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQADGG--TRTAAITGAFVALSDAVT 144

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLM-VE 189
                       P    +    V  ++G+  L+ P  ++ +  +D+ V  T    L+ V+
Sbjct: 145 WLAASGRLADPQPISCAIAAVSVGLVDGRVRLDLPYEEDSRAEVDMNVVATDTGTLVEVQ 204

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
             A   +     +   +       + ++ A  +   +
Sbjct: 205 GTAEGATFHRKTLDKLLDLAFAGIEQLVVAQREALAL 241


>gi|291460911|ref|ZP_06025826.2| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380070|gb|EFE87588.1| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 436

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 116/312 (37%), Gaps = 30/312 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R I     +     GS L   G+T+ I   ++     E+    L GT + 
Sbjct: 4   REDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASV----SEKVPPFLRGTGKG 59

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E ++  A       R +   RL  RA+   +         + I  +
Sbjct: 60  WVTAEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +AL                P+   VA I++G +       ++ 
Sbjct: 120 VIQADGGTRTTSITGGYIALALAIKKLLKEEILEENPLIANVAAISVGKINSE----LMV 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G    +Q   +    +   +   L  A+     I++   
Sbjct: 176 DLKYSEDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQD 235

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVKI 595
           KV+ +    L  F        I  ++I + I  G + I  +  + G ++  + +DG    
Sbjct: 236 KVIEQ--ENLKIFLATGNKHKI--EEISD-IFSGIENIEILSIKDGIEIPEVIEDGKTFE 290

Query: 596 ASSSLAEIEAAR 607
            +S    +E A+
Sbjct: 291 ENSKKKAVEIAK 302



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 98/291 (33%), Gaps = 26/291 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +     G     +T  Y     A  +       +  +
Sbjct: 26  AEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVTAEYSMLPRATNERNQREASK-GK 84

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 85  LTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 144

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  IN + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 145 KLLKEEILEENPLIANVAAISVGKINSELMVDLKYSEDSAAEVDMNVIMNKKGEFIEVQG 204

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMI 248
              +   +   +   +       K +I+   K+ +      I + + +  K+EE      
Sbjct: 205 TGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ-ENLKIFLATGNKHKIEEISDIFS 263

Query: 249 KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQ 299
             +      I +     + I+D K         E+S     EI      I 
Sbjct: 264 GIENIEILSIKDGIEIPEVIEDGKT------FEENSKKKAVEIAKFLNMIT 308


>gi|257468117|ref|ZP_05632213.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|317062402|ref|ZP_07926887.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|313688078|gb|EFS24913.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
          Length = 254

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 105/261 (40%), Gaps = 24/261 (9%)

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++  ++   +   K+R DGR  +++R+I           GS L   G+T+ I   ++  
Sbjct: 2   EVKEMIIEEDLRTLKLREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASV-- 59

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPV 412
              E+    + G  +      Y+ +P ATGE ++     G  S R +   RL  RA+   
Sbjct: 60  --SEKVPPFMRGQGKGWLTAEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTA 117

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAG 461
           +        T+ I  ++ ++DG +   ++ G  +AL  A             PI   VA 
Sbjct: 118 VDLEKLGERTITIDCDVIQADGGTRTTSISGGFIALALAVKKLMKDRVLNVNPIVSNVAA 177

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMA 520
           I++G+V        + D+   ED    +D  V     G    +Q   +    +   +   
Sbjct: 178 ISVGIV----RGTPMLDLMYTEDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNEL 233

Query: 521 LQQAKRGRLHILNEMSKVLSE 541
           +  A+ G   I+   ++V+ E
Sbjct: 234 IDLAEVGIKEIIRLQNEVIGE 254



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 21/214 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T V+ T      +     GQ    LT  Y     A G+        + +
Sbjct: 40  AEGSVLIEFGNTKVICTASVSEKVPPFMRGQGKGWLTAEYSMIPRATGE-RNQRESAKGK 98

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +   + I R+I R++R      K  +    +  +V+Q D  +    +S    + AL + 
Sbjct: 99  LSGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQADGGTRTTSISGGFIALALAVK 158

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
            L         P    V    V  + G  +L+    ED   +  +++ ++G  + V  V+
Sbjct: 159 KLMKDRVLNVNPIVSNVAAISVGIVRGTPMLDLMYTEDSAAEVDMNVVMNGKGEFV-EVQ 217

Query: 190 LEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
               +   +   + + I       K +I   +++
Sbjct: 218 GTGEEATYTRKELNELIDLAEVGIKEIIRLQNEV 251


>gi|311031422|ref|ZP_07709512.1| ribonuclease PH [Bacillus sp. m3-13]
          Length = 253

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 23/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+   +R+I      +    GS L   G+T+ I   T+    +++    + G  + 
Sbjct: 3   RTDGREQNQLREIEIITDYITHPEGSVLISVGNTKVICSATI----EDRVPPFMRGGGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT + +      G  + R +   RL  RA+  V+        T+ I  +
Sbjct: 59  WITAEYSMLPRATEKRTMRESTKGKVTGRTMEIQRLIGRALRSVVELDKIGEKTIWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A++ A            +P++  +A  ++G++KDG     L 
Sbjct: 119 VIQADGGTRTASITGAFVAMVLAFQKLVEAKRIASLPVTDFLAATSVGVMKDGQ---ALL 175

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +D  V  T S  +  +Q   +    +   +   L  A+ G LH++    
Sbjct: 176 DLNYIEDSTAQVDMNVIMTGSLDLVELQGTGEESTFTRKQLNELLDMAEEGILHLVEVQK 235

Query: 537 KV 538
           K 
Sbjct: 236 KA 237



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 26/221 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL + G T V+ +   +  +     G     +T  Y     A  K       +  + T
Sbjct: 27  GSVLISVGNTKVICSATIEDRVPPFMRGGGKGWITAEYSMLPRATEKRTMRESTK-GKVT 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM---- 139
              + I R+I R++R +       E    +  +V+Q D        S+  A  A++    
Sbjct: 86  GRTMEIQRLIGRALRSVVELDKIGEKTIWIDCDVIQADGG--TRTASITGAFVAMVLAFQ 143

Query: 140 -------LSGLPFEGPVVGAQVD-YINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                  ++ LP    +    V    +GQ +L+    ED   Q  +++ ++G+ D ++ +
Sbjct: 144 KLVEAKRIASLPVTDFLAATSVGVMKDGQALLDLNYIEDSTAQVDMNVIMTGSLD-LVEL 202

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +    +   +   + + +         ++E   K      +
Sbjct: 203 QGTGEESTFTRKQLNELLDMAEEGILHLVEVQKKALGPLGE 243


>gi|313199824|ref|YP_004038482.1| ribonuclease ph [Methylovorus sp. MP688]
 gi|312439140|gb|ADQ83246.1| ribonuclease PH [Methylovorus sp. MP688]
          Length = 238

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 31/236 (13%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R++  +R I       +   GS L   GDT  +   ++    DE+    L G  +
Sbjct: 1   MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASV----DEKVPGFLRGKNQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG         G  S R     RL  R++  ++        +++I  
Sbjct: 57  GWVTAEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D           +  P+   VA +++G+ +       +
Sbjct: 117 DVIQADGGTRTASITGAYVALHDAISRLLAQGLISESPLLDSVAAVSVGVYQGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED     D  V  T SG   +++     G+         Q+A   R+  L
Sbjct: 173 LDLDYIEDSDCDTDMNVVMTGSGG-YVEIQGTAEGVP-------FQRADMDRMLDL 220



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++      + ++G+VL  +G+T VL T   D  +     G++   +T  Y     + 
Sbjct: 12  RPIEI-IRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G        R  + +     I R+I RS+R +    K  +   Q+  +V+Q D       
Sbjct: 71  GSRMDREAAR-GKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            +S  P    V    V    G  VL+    ED      +
Sbjct: 128 ASITGAYVALHDAISRLLAQGLISESPLLDSVAAVSVGVYQGTPVLDLDYIEDSDCDTDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V  ++  A  +      +   +       + +    +K 
Sbjct: 188 NVVMTGSGGYV-EIQGTAEGVPFQRADMDRMLDLAAAGIRELTTLQTKA 235


>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
 gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
          Length = 236

 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 14/239 (5%)

Query: 303 VRTVMLDKKV-RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           +  ++ + +  R DGR  + +R I  + G+L+R  GS+    G  + +  V  G RE   
Sbjct: 1   MFFIISENEKLRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASV-YGPRES-- 57

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           Y+  L         + YN  P +  +  R G P RR     ++A  A+ P L   +    
Sbjct: 58  YIRRLLKPNTGVIRVRYNMAPFSVDDRKRPG-PDRRSTEISKIAADALRPALMLESFPRS 116

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + +  E+ E++G +  A +  +++AL DAG+P+   V G A G V D     I+ D+S 
Sbjct: 117 MVDVSIEVIEAEGGTRCAGITAAAVALADAGIPMKDIVVGCAAGKVNDE----IVLDLSE 172

Query: 482 DEDHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            ED  G  D  +A       IT +Q D   G ++E     AL  A  G + I     + 
Sbjct: 173 KEDKEGQADVPIAIMPRTGEITLLQAD---GNLTEEEFEEALDLAIEGCMKISEIQHEA 228



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+E G + +++DG+     G   +LA+V   R     +   P    + V Y    ++
Sbjct: 22  RPIKIEAGVL-KRADGSAYLEVGGNKILASVYGPRESYIRRLLKPNTGVIRVRYNMAPFS 80

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V        R+   P      IS++   ++RP  +     ++   V I V++   E    
Sbjct: 81  VDD------RKRPGPDRRSTEISKIAADALRPALMLESFPRSMVDVSIEVIEA--EGGTR 132

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
              + AA+ AL  +G+P +  VVG     +N + VL+    ED   Q  + + +      
Sbjct: 133 CAGITAAAVALADAGIPMKDIVVGCAAGKVNDEIVLDLSEKEDKEGQADVPIAIMPRTGE 192

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           + +++ + N L+E+   +A+      C  + E   +  K
Sbjct: 193 ITLLQADGN-LTEEEFEEALDLAIEGCMKISEIQHEALK 230


>gi|91791686|ref|YP_561337.1| ribonuclease PH [Shewanella denitrificans OS217]
 gi|123357198|sp|Q12SG2|RNPH_SHEDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91713688|gb|ABE53614.1| RNAse PH [Shewanella denitrificans OS217]
          Length = 237

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSKRTPAQTRPITITRNFTAHAEGSVLVEFGETKVLCTASFT----EGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R++   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A++D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVAMVDALNWARAKNIIKSNPLKFLIAAVSVGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S   +   L  AK     I++  
Sbjct: 173 SDLEYLEDSAAETDMNVVMTETGKIIEVQGTAEGEPFSHEELNELLGLAKNSIREIVDVQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KSALN 237



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 84/227 (37%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +     A  ++G+VL  +GET VL T  +   +     GQ    +T  Y     + 
Sbjct: 12  RPITITRNFTAH-AEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I RS+R         E  ++   +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  A++           +   P +  +    V    G+ + +    ED   +  +
Sbjct: 128 AAITGACVAMVDALNWARAKNIIKSNPLKFLIAAVSVGIYKGEAISDLEYLEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ V+   E    S + + + +    N  + +++   
Sbjct: 188 NVVMTET-GKIIEVQGTAEGEPFSHEELNELLGLAKNSIREIVDVQK 233


>gi|297583709|ref|YP_003699489.1| ribonuclease PH [Bacillus selenitireducens MLS10]
 gi|297142166|gb|ADH98923.1| ribonuclease PH [Bacillus selenitireducens MLS10]
          Length = 261

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 23/238 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +RDI    G ++   GS L   GDT+ I   ++    +++    L G  +     
Sbjct: 7   RLNHQLRDIDMIPGYIKHPEGSVLISFGDTKVICSASI----EDRVPPFLRGQGKGWVTA 62

Query: 377 HYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP AT       S  G  + R +   RL  RA+  V+        T+ +  ++ ++
Sbjct: 63  EYAMLPRATESRNIRESSKGKVTGRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQA 122

Query: 433 DGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+  A       LM+ G     P++  +A I++G+  DGD   IL D+  
Sbjct: 123 DGGTRTASITGAFTAVALAFENLMEEGKLEENPLTDFLAAISVGVASDGD---ILLDLDY 179

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            ED    +D  +  T +G +  +Q   +    S   M   L  A+ G   ++++   V
Sbjct: 180 SEDSTADVDMNIVMTGTGQLVEVQGTGEEATFSRAEMNKMLDVAEEGIGKLIDKQKAV 237



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 26/221 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL ++G+T V+ +   +  +     GQ    +T  Y     A  +        + + T
Sbjct: 27  GSVLISFGDTKVICSASIEDRVPPFLRGQGKGWVTAEYAMLPRAT-ESRNIRESSKGKVT 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R + +     E    V  +V+Q D        S+  A  A+ L+  
Sbjct: 86  GRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQADGG--TRTASITGAFTAVALAFE 143

Query: 142 ---------GLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                      P    +    V    +G  +L+    ED      +++ ++GT   ++ V
Sbjct: 144 NLMEEGKLEENPLTDFLAAISVGVASDGDILLDLDYSEDSTADVDMNIVMTGT-GQLVEV 202

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           +    + +     +   +         +I+    +    A+
Sbjct: 203 QGTGEEATFSRAEMNKMLDVAEEGIGKLIDKQKAVIGPFAE 243


>gi|120612226|ref|YP_971904.1| ribonuclease PH [Acidovorax citrulli AAC00-1]
 gi|120590690|gb|ABM34130.1| RNAse PH [Acidovorax citrulli AAC00-1]
          Length = 253

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +           GS L   G T+ +   ++    +E+      G+   
Sbjct: 12  RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASV----EERVPPHKRGSGEG 67

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++  V    A    T+++  +
Sbjct: 68  WVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCD 127

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D           A  PI+ P+A +++G+V+       L 
Sbjct: 128 VLQADGGTRTAAITGAWVAAHDAVSALLEGGKIAASPITAPLAAVSVGIVQGTP----LL 183

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D G    +Q   +    + + M   L  A RG   ++    
Sbjct: 184 DLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIALQR 243

Query: 537 KVLSES 542
           + LS  
Sbjct: 244 QALSAP 249



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 23/221 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T      ++G+VL  +G T VL T   +  +     G     +T  Y     A 
Sbjct: 22  RPVRI-TRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRAT 80

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH- 127
                       + +     I R+I RS+R +F      E   Q+  +V+Q D  +    
Sbjct: 81  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAA 139

Query: 128 -----VVSMVAASAALM---LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS 179
                V +  A SA L    ++  P   P+    V  + G  +L+    ED         
Sbjct: 140 ITGAWVAAHDAVSALLEGGKIAASPITAPLAAVSVGIVQGTPLLDLEYTED------VQC 193

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            T   V+M++     +      + I F  +E   +++  ++
Sbjct: 194 DTDMNVVMMDG-GRFVEVQGTAEGIAFTRSEMDRLLDLAAR 233


>gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
 gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
          Length = 251

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R IS   G      GS L   G T+ +   ++             G+   
Sbjct: 4   RADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVNDG----VPPWRRGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S      G    R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVTWLRAAGKLSDPQPLSCAIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A  G   +    
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTEKLFEAQ 235

Query: 536 SKVLSESRL 544
            +VL+    
Sbjct: 236 REVLAAPYP 244



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 31/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+    G  +  + G+VL  +G+T V+ T   +  +     G     LT  Y     A 
Sbjct: 14  RPISFTRGFTSHPA-GSVLVEFGQTRVMCTASVNDGVPPWRRGSGLGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +       +  R       ISR++ RS+R         E  +    +V+Q D       
Sbjct: 73  HERSSRESVK-GRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  L+ P  ++ +  +D
Sbjct: 130 AAITGAYVALADAVTWLRAAGKLSDPQPLSCAIAAVSVGVVDGRVRLDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T    L+      +       + D +LD    G      + EA  ++   
Sbjct: 190 MNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTE---KLFEAQREVLAA 241


>gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1]
 gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1]
          Length = 245

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R +       +   GS L   GDT+ I   T+    +E+    L G  + 
Sbjct: 3   RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATV----EERVPPFLKGLGKG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP ATG  +      G    R +   RL  RA+  V+   A    +L +  +
Sbjct: 59  WVTAEYSMLPRATGSRTIREAARGKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A+           M   +P+S  +A  ++G+V        + 
Sbjct: 119 VIQADGGTRTASITGAYVAMIFALNRLVEQGMLEKIPVSDFIAATSVGIV----KGRPVI 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED +  +D  V  T +G    +Q   +    S   M   L  A  G   +     
Sbjct: 175 DLCYAEDSVAEVDMNVVMTGTGRFVEIQGTGEEATFSREEMNQLLDLAAAGIEELNKVQR 234

Query: 537 KVLSESRLQL 546
           +VL +   ++
Sbjct: 235 QVLGDIAAKI 244



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 83/225 (36%), Gaps = 26/225 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +           +T  Y     A G        R 
Sbjct: 23  KYAEGSVLIEVGDTRVICTATVEERVPPFLKGLGKGWVTAEYSMLPRATGSRTIREAAR- 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL- 138
            +     + I R+I R++R + +     E  +    +V+Q D        S+  A  A+ 
Sbjct: 82  GKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDCDVIQADGG--TRTASITGAYVAMI 139

Query: 139 ----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                     ML  +P    +    V  + G+ V++    ED   +  +++ ++GT    
Sbjct: 140 FALNRLVEQGMLEKIPVSDFIAATSVGIVKGRPVIDLCYAEDSVAEVDMNVVMTGT-GRF 198

Query: 186 LMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISK-LAKMCAK 227
           + ++    + +   + +   +       + + +   + L  + AK
Sbjct: 199 VEIQGTGEEATFSREEMNQLLDLAAAGIEELNKVQRQVLGDIAAK 243


>gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
 gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
          Length = 241

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +S + G  +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D               VP+   V+ +++G++    D + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGII----DSVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             D+  +ED     D  V  T  G    +Q   +        +   L  A  G   +   
Sbjct: 175 YLDLRYEEDVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCTDLAAL 234

Query: 535 MSKV 538
             + 
Sbjct: 235 QREA 238



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL T  +   +   + G     +T  Y     A 
Sbjct: 13  RPVSIERGW-SKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +              +P    V    V  I+    L+ R +ED   + 
Sbjct: 129 AAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIIDSVPYLDLRYEEDVRAET 188

Query: 173 SLDLFVSGTQDAVLMVELEANQLS 196
            +++  +G     + V+  A    
Sbjct: 189 DMNVVRTG-DGRFVEVQGTAEAAP 211


>gi|325499450|gb|EGC97309.1| ribonuclease PH [Escherichia fergusonii ECD227]
          Length = 228

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 24/233 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R ++      +   GS L   GDT+ +   ++    +E     L G  +      Y  L
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEYGML 56

Query: 382 PCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P +T   +      G    R +   RL  RA+   +   A   +T+ +  ++ ++DG + 
Sbjct: 57  PRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTR 116

Query: 438 MATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G+ +AL D              P+   VA +++G+V        + D+   ED  
Sbjct: 117 TASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIVNGE----AVCDLEYVEDSA 172

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              D  V  T+ G I  +Q   +    +   ++  L  A+ G   I+      
Sbjct: 173 AETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAA 225



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     + 
Sbjct: 2   RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 61  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRT 117

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ V +    ++     D+
Sbjct: 118 ASITGACVALADALNKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDM 177

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 178 NVVMTEDGRIIEVQGTAE 195


>gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118]
 gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 24/240 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+  R +  +R +  Q G      GS L   G+T+ +   ++    +E+      G+ + 
Sbjct: 6   RVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASV----EEKVPAHKKGSGQG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R     RL  RA+  V   +     T+ +  +
Sbjct: 62  WVTAEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  DA             PI   VA I++G+V    D   L 
Sbjct: 122 VLQADGGTRTAAITGAFVAAQDAVTQLLMQGKLQLSPIRDHVAAISVGIV----DGTPLL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    S   M   L  A++G   ++    
Sbjct: 178 DLEYTEDSACDTDMNVVMTGAGQFVEVQGTAEGAAFSRREMDALLALAEQGISDLVALQK 237



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 28/228 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +K++ G     ++G+VL  +G T VL T   +  +   K G     +T  Y     A 
Sbjct: 16  RAVKIQRG-YTMHAEGSVLIEFGNTKVLCTASVEEKVPAHKKGSGQGWVTAEYGMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                    R  + +     I R+I R++R +F      E    +  +V+Q D       
Sbjct: 75  HSRNEREAAR-GKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCDVLQADGG--TRT 131

Query: 129 VSMVAASAA-------------LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--- 172
            ++  A  A             L LS  P    V    V  ++G  +L+    ED     
Sbjct: 132 AAITGAFVAAQDAVTQLLMQGKLQLS--PIRDHVAAISVGIVDGTPLLDLEYTEDSACDT 189

Query: 173 SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            +++ ++G    V +    E    S   +   +         ++    
Sbjct: 190 DMNVVMTGAGQFVEVQGTAEGAAFSRREMDALLALAEQGISDLVALQK 237


>gi|186475433|ref|YP_001856903.1| ribonuclease PH [Burkholderia phymatum STM815]
 gi|226736895|sp|B2JEI0|RNPH_BURP8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|184191892|gb|ACC69857.1| ribonuclease PH [Burkholderia phymatum STM815]
          Length = 246

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R  GR ++ +RD+       +   GS L   GDT+ I   ++     E     L
Sbjct: 1   MNDITKRPSGRTADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIA----ESVPAFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP AT   S      G  + R     RL  RA+  V         T
Sbjct: 57  RDRGQGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGART 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           L I  ++ ++DG +  A++ G+ +A  D              PI+  VA I++G+     
Sbjct: 117 LHIDCDVIQADGGTRTASITGAFVAARDAVAKLLATGRIETSPITDYVAAISVGVF---- 172

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D I + D+  DED     D  V  T   G   +Q   +    S + M   L  A+ G   
Sbjct: 173 DGIPVLDLDYDEDSQCDTDMNVVMTGDGGFVEIQGTAEGVPFSRDEMNKLLDLAQAGIAT 232

Query: 531 ILNEMSKV 538
           ++ +  + 
Sbjct: 233 LIAKQKEA 240



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 22/233 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ T     S+      +    LT  Y     A 
Sbjct: 17  RDVRI-TRHYTKHAEGSVLVEFGDTKVICTASIAESVPAFLRDRGQGWLTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPH- 127
                       + T     I R+I R++R +F  +     T  +  +V+Q D  +    
Sbjct: 76  -HTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGARTLHIDCDVIQADGGTRTAS 134

Query: 128 -----VVSMVAASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
                V +  A +  L    +   P    V    V   +G  VL+   DED      +++
Sbjct: 135 ITGAFVAARDAVAKLLATGRIETSPITDYVAAISVGVFDGIPVLDLDYDEDSQCDTDMNV 194

Query: 177 FVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            ++G     + ++  A  +  S D +   +         +I    +  +   +
Sbjct: 195 VMTG-DGGFVEIQGTAEGVPFSRDEMNKLLDLAQAGIATLIAKQKEALESKGE 246


>gi|149908596|ref|ZP_01897258.1| putative ribonuclease PH [Moritella sp. PE36]
 gi|149808430|gb|EDM68367.1| putative ribonuclease PH [Moritella sp. PE36]
          Length = 243

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    VR ++          GS L   G T+ +   T+    ++     L G  +
Sbjct: 1   MRPSQRTLGQVRPVTITRNFTANAEGSVLVEFGGTKVLCTATV----EKGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +     A       R +   RL  R++   +   +   +T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHKRMHREAARGQQTGRTMEIQRLIARSLRACIDLESLGEHTIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL DA             PI   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALADAIEFLIRKGKLTVSPIKFMIAAVSVGIYKGE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G    +Q   +    S   M+  L  AK G   I+ E 
Sbjct: 173 CDLDYAEDSDAETDMNVVMTETGKFIEIQGTAEGVPFSHEEMLDMLALAKDGIEMIIIEQ 232

Query: 536 SKVLSES 542
            K L +S
Sbjct: 233 KKALGDS 239



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 89/237 (37%), Gaps = 42/237 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +     A  ++G+VL  +G T VL T   ++ +     G+    +T  Y       
Sbjct: 12  RPVTITRNFTA-NAEGSVLVEFGGTKVLCTATVEKGVPRFLKGKGQGWVTAEY------- 63

Query: 71  GKIPGGYLRR------ESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL 122
           G +P    +R        + T   + I R+I RS+R         E  +I   +V+Q D 
Sbjct: 64  GMLPRSTHKRMHREAARGQQTGRTMEIQRLIARSLRACIDLESLGEHTIIIDCDVIQADG 123

Query: 123 ESSPHVVSMVAASAALM-------------LSGLPFEGPVVGAQVDYINGQYVLNPRLDE 169
                  ++  A  AL              +S + F   +    V    G+ V +    E
Sbjct: 124 G--TRTAAITGACVALADAIEFLIRKGKLTVSPIKFM--IAAVSVGIYKGEAVCDLDYAE 179

Query: 170 D---QGSLDLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
           D   +  +++ ++ T    + ++  A  +  S + +LD +    +  + +I    K 
Sbjct: 180 DSDAETDMNVVMTET-GKFIEIQGTAEGVPFSHEEMLDMLALAKDGIEMIIIEQKKA 235


>gi|127514416|ref|YP_001095613.1| ribonuclease PH [Shewanella loihica PV-4]
 gi|166228318|sp|A3QIQ6|RNPH_SHELP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126639711|gb|ABO25354.1| RNAse PH [Shewanella loihica PV-4]
          Length = 237

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R ++          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLIEFGETKVLCTASFT----EGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGLIKTNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G I  +Q   +    S   ++  L  AK G   I++  
Sbjct: 173 CDLEYVEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQ 232

Query: 536 SKVLS 540
              LS
Sbjct: 233 KAALS 237



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 85/227 (37%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +GET VL T  +   +     GQ    +T  Y     + 
Sbjct: 12  RPVTI-TRQFTAHAEGSVLIEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I R++R         E  ++   +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL           ++   P +  +    V    G+ + +    ED   +  +
Sbjct: 128 AAITGACVALVDALNWARGKGLIKTNPLKFLIAAVSVGIYKGEPICDLEYVEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ ++   E    S + +L  +    +  + +++   
Sbjct: 188 NVVMTET-GKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQK 233


>gi|205374390|ref|ZP_03227188.1| ribonuclease PH [Bacillus coahuilensis m4-4]
          Length = 247

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 110/251 (43%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R ++ +   L    GS L   G T+ I   ++    +E+    + G  +
Sbjct: 1   MRRNERKVDELRPVTIETDYLIHPEGSVLISIGQTKVICTASV----EERVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT +     S  G  + R +   RL  R++  V+  TA    T+ I  
Sbjct: 57  GWVNAEYSMLPRATEKRTIRESSKGKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+  A             P++  ++ I++G+ ++     ++
Sbjct: 117 DVIQADGGTRTASITGAFIAMTIAIDKISKEKKLPRFPVNDFLSAISVGIDREK---TVI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+S DED    +D  V  T SG    +Q   +    + + +   L  A++G   ++   
Sbjct: 174 LDLSYDEDSTARVDMNVVMTGSGEFVEVQGTGEEATFTMSELQQLLSVAEKGNRELMKFQ 233

Query: 536 SKVLSESRLQL 546
            + L E   ++
Sbjct: 234 KEALGEIAGKI 244



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 28/237 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ET  +    +G+VL + G+T V+ T   +  +     G+    +   Y     A 
Sbjct: 12  RPVTIETDYLIH-PEGSVLISIGQTKVICTASVEERVPPFMRGEGKGWVNAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            K       +  + T   + I R+I RS+R +       E    +  +V+Q D       
Sbjct: 71  EKRTIRESSK-GKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVD-YINGQYVLNPRLDED---QGS 173
            S+  A  A+ ++             P    +    V        +L+   DED   +  
Sbjct: 128 ASITGAFIAMTIAIDKISKEKKLPRFPVNDFLSAISVGIDREKTVILDLSYDEDSTARVD 187

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAK 227
           +++ ++G+ + V  V+    +   +   +   +       + +++   + L ++  K
Sbjct: 188 MNVVMTGSGEFV-EVQGTGEEATFTMSELQQLLSVAEKGNRELMKFQKEALGEIAGK 243


>gi|190575702|ref|YP_001973547.1| ribonuclease PH [Stenotrophomonas maltophilia K279a]
 gi|226736944|sp|B2FT17|RNPH_STRMK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190013624|emb|CAQ47259.1| putative ribonuclease PH [Stenotrophomonas maltophilia K279a]
          Length = 241

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 24/221 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +  Q G  +   GS L   G+T+ +   ++    + +    L G    
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R +   RL  R++   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+D              PI   VA +++G+         + 
Sbjct: 121 VLQADGGTRTAAITGAYVALVDAVNVLMKRGDIKRNPILGAVAAVSVGVY----RGTPVL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIM 517
           D+   ED     D  V   D  G   +Q   +      + +
Sbjct: 177 DLDYAEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDEL 217



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ ++ G   R ++G+VL  +GET VL T   +  +     G+    +T  Y     A 
Sbjct: 15  RPVVIQRG-FTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTAEYGMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I RS+R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +         +   P  G V    V    G  VL+    ED      +
Sbjct: 131 AAITGAYVALVDAVNVLMKRGDIKRNPILGAVAAVSVGVYRGTPVLDLDYAEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|325266593|ref|ZP_08133270.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982036|gb|EGC17671.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
          Length = 292

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R I+     L    GS L   G+T+ I   T+    DE     L G  +     
Sbjct: 58  RATDALRPITITPNFLPHADGSVLMACGNTKVICTATI----DENIPPFLRGKGQGWVTA 113

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    +     G  S R     RL  R++   +  T      + I  ++ ++
Sbjct: 114 EYGMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRAAVDMTKLGERQILIDCDVIQA 173

Query: 433 DGSSSMATVCGSSLA--------LMDAGV---PISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +A        L D  +   P+   VA I++G+V      + L D+  
Sbjct: 174 DGGTRTASITGAFVALQIAVRKLLADGRIAENPLVGSVAAISVGVV----GGVPLLDLDY 229

Query: 482 DEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  +   +   I  +Q   +      + +   +   ++G   +     + + 
Sbjct: 230 PEDSGCDSDINLVMLNADKIIEIQGTAEGAAFGMDELQQLVALGQKGIRELSELQRQAVQ 289

Query: 541 ES 542
            +
Sbjct: 290 AA 291



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 32/236 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T      +DG+VL   G T V+ T   D ++     G+    +T  Y     + 
Sbjct: 64  RPITI-TPNFLPHADGSVLMACGNTKVICTATIDENIPPFLRGKGQGWVTAEYGMLPAST 122

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    + +     I R+I RS+R         E Q++   +V+Q D    
Sbjct: 123 ----QSRMKREAAAGKQSGRTQEIQRLIGRSLRAAVDMTKLGERQILIDCDVIQADGG-- 176

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            ++  P  G V    V  + G  +L+    ED    
Sbjct: 177 TRTASITGAFVALQIAVRKLLADGRIAENPLVGSVAAISVGVVGGVPLLDLDYPEDSGCD 236

Query: 172 GSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
             ++L +    D ++ ++  A       D +   +  G    + + E   +  +  
Sbjct: 237 SDINLVML-NADKIIEIQGTAEGAAFGMDELQQLVALGQKGIRELSELQRQAVQAA 291


>gi|328675533|gb|AEB28208.1| Ribonuclease PH [Francisella cf. novicida 3523]
          Length = 235

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++              +  
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASV----VAGVPKFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  TA    T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA +++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V    + GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     LT  Y     +            
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLTAEYGMLPRST-HTRMDREAAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +               P    V    V   N + VL+   DED   +  +++ ++ +  
Sbjct: 139 DAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SNG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
          Length = 246

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 93/237 (39%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+ +R+DGR    +R I   +G+  +  GS+   +G+T+ +  V  G  E      
Sbjct: 5   ELLSDQGLRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAV-YGPHEIRGS-K 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S +   +      Y+    + GE  R     R+               +         + 
Sbjct: 63  SKALHDKAFVNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELYPRSQID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG +  A V  + +AL+DAGVP+   V      LVKD    + L D++  E 
Sbjct: 123 IFVEVLQADGGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKD----VPLVDVNHVER 178

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             G  +  V+       I  M +  +      + ++    +  +    ILNE+ K  
Sbjct: 179 SGGSPELVVSILPHSGEIVYMSLTQRFHIDHLSKVLDTAIKGCKDIGAILNEIMKGH 235



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 79/214 (36%), Gaps = 30/214 (14%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDG-----QDFFPLTVNYQERTYAVGKIPGGYLRR 80
           Q+DG+     G T VLA V     ++        D   +   Y   T+++G+      +R
Sbjct: 34  QADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAFVNCQYSTATFSMGE-----RKR 88

Query: 81  ESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
             R       +S  ++ +           +++  + + V+Q D  +      + AA  AL
Sbjct: 89  RPRGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEVLQADGGNY--TACVNAAMMAL 146

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLS-- 196
           + +G+P +  VV      +    +++    E  G       G+ + V+ +   + ++   
Sbjct: 147 VDAGVPLKDTVVSCTASLVKDVPLVDVNHVERSG-------GSPELVVSILPHSGEIVYM 199

Query: 197 -------EDVVLDAIIFGHNECKPVIEAISKLAK 223
                   D +   +      CK +   ++++ K
Sbjct: 200 SLTQRFHIDHLSKVLDTAIKGCKDIGAILNEIMK 233


>gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
 gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
          Length = 261

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 22/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +   +       GS+L   G+T+ +   ++    +E     L G QR
Sbjct: 2   IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASV----EEGVPQWLRGQQR 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP +T + +R        R     RL  RA+   +   A   +T+ I  ++
Sbjct: 58  GWVTAEYALLPRSTAQRTRRERNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDV 117

Query: 430 TESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A++ G  +AL             A  PI + VA ++ G V        L D
Sbjct: 118 LQADGGTRTASITGGYVALALALHRLTAAGRLAANPIRRAVAAVSAGYV----GGNALLD 173

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +   ED +  MD  +  TD G I  +Q   +   +S     + +  A  G   +L    +
Sbjct: 174 LDYSEDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDVLIDLASDGIHRLLALQRE 233

Query: 538 V 538
            
Sbjct: 234 A 234



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++        ++G+ L   G T VL T   +  +     GQ    +T  Y     + 
Sbjct: 13  RPVRISIDTYGY-AEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVTAEYALLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS----KCYKNETQVIINVMQHDLESSP 126
            +      R  +  +     I R+I R++R   +      +     +  +V+Q D  +  
Sbjct: 72  AQ---RTRRERNGLSGRTQEIQRLIGRALRAAVALEALDGFT--VTIDCDVLQADGGTRT 126

Query: 127 HVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
             ++    + AL L  L         P    V      Y+ G  +L+    ED    +D 
Sbjct: 127 ASITGGYVALALALHRLTAAGRLAANPIRRAVAAVSAGYVGGNALLDLDYSEDSVADMDC 186

Query: 177 FVSGTQD-AVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            +  T D A++ V+   EA  +S       I    +    ++    +     
Sbjct: 187 NLVLTDDGAIVEVQSTAEARAVSRAEFDVLIDLASDGIHRLLALQREALAPV 238


>gi|332527984|ref|ZP_08404018.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332112558|gb|EGJ12351.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 241

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 24/233 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR  GR  + +R ++      +   GS L   GDTQ +   ++    +E+      G+  
Sbjct: 4   VRSSGRAHDALRPVTITRHYTKHAEGSVLVCFGDTQVLCTASV----EEKVPPHKRGSGE 59

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V    A    ++ I  
Sbjct: 60  GWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRTVFDLGALGERSILIDC 119

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D           A  PI   VA I++G+V+       L
Sbjct: 120 DVLQADGGTRTAAITGAFVAAQDAVNWLLAQGKIAASPIRDQVAAISVGIVQGTP----L 175

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+   ED     D  V  T S G   +Q   +    +   M   L  A +G 
Sbjct: 176 LDLEYIEDSACDTDMNVVMTGSGGFVEIQGTAEGVPFTRAEMDALLALAGKGI 228



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 24/202 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+VL  +G+T VL T   +  +     G     +T  Y     A 
Sbjct: 15  RPVTI-TRHYTKHAEGSVLVCFGDTQVLCTASVEEKVPPHKRGSGEGWVTAEYGMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
               G       + +     I R+I RS+R +F      E    +  +V+Q D       
Sbjct: 74  -HTRGDREAARGKQSGRTQEIQRLIGRSLRTVFDLGALGERSILIDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  A  A             ++  P    V    V  + G  +L+    ED      +
Sbjct: 131 AAITGAFVAAQDAVNWLLAQGKIAASPIRDQVAAISVGIVQGTPLLDLEYIEDSACDTDM 190

Query: 175 DLFVSGTQDAVLMVELEANQLS 196
           ++ ++G+   V  ++  A  + 
Sbjct: 191 NVVMTGSGGFV-EIQGTAEGVP 211


>gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|256787469|ref|ZP_05525900.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|21759422|sp|Q9S2H7|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24]
          Length = 245

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ + G  +   GS L   GDT+ +   ++     E       G+   
Sbjct: 3   RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIV----DGTP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    + + +   L  A  G   +   
Sbjct: 175 LLDLRYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAEL 234

Query: 535 MSKVLSE 541
             K L  
Sbjct: 235 QRKALDA 241



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 26/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E G  ++ ++G+VL ++G+T VL        +   + G     +T  Y     A 
Sbjct: 13  RPVTIERGW-SKHAEGSVLVSFGDTKVLCNASVTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + R       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALM-------------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
            ++  A  AL               +  P  G V    V  ++G  +L+ R +ED +   
Sbjct: 129 AAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLRYEEDVRADT 188

Query: 175 DLFVSGTQDA-VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           D+ V  T D   + V+   EA   + D +   +      C  + E   K 
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRKA 238


>gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1]
          Length = 243

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++ +    +   GS L   GDT+ +   +      E       G+   
Sbjct: 3   RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASFT----EGVPRWRKGSGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVTAEYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA               P++  V+ +++G+V      I 
Sbjct: 119 VLQADGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIV----GGIP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  +ED     D  V  T  G    +Q   +    +   +   L  A  G   +   
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEI 234

Query: 535 MSKVLSESR 543
               L+  R
Sbjct: 235 QRAALAGER 243



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 28/236 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +E    ++ ++G+VL ++G+T VL T  +   +   + G     +T  Y     A 
Sbjct: 13  RPVTIER-AWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       +       ISR+I RS+R +       E  V+   +V+Q D       
Sbjct: 72  N-TRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P  G V    V  + G  +L+   +ED   + 
Sbjct: 129 AAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGGIPLLDLCYEEDVRAET 188

Query: 173 SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            +++  +G    V +    E    + + +   +      C  + E     A +  +
Sbjct: 189 DMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEIQR--AALAGE 242


>gi|85859450|ref|YP_461652.1| ribonuclease PH [Syntrophus aciditrophicus SB]
 gi|123516627|sp|Q2LTS3|RNPH_SYNAS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85722541|gb|ABC77484.1| ribonuclease PH [Syntrophus aciditrophicus SB]
          Length = 240

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 100/243 (41%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R  + +R++      L+   GS L   GDT+ I    L    + +    L  + +
Sbjct: 1   MRKNRRHEDELREVKITRNYLKHPQGSVLIEVGDTKVICTAAL----EAKVPPFLRNSGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E ++     G    R     RL  R++  V    +    T+ I  
Sbjct: 57  GWLTAEYAMLPMATQERNQRESVRGHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +AL+D             +PI   V+ +++G+V    D  +L
Sbjct: 117 DVIQADGGTRTASITGSFVALVDLFRKMKEKGICETMPIRDYVSAVSVGVV----DGQLL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T +G    +Q   +      + +   ++ A RG   +    
Sbjct: 173 LDLEYEEDSRADVDMNVVMTGAGEFIEVQGTAERVPFGRDRLTAMVELAGRGIRKLTEVQ 232

Query: 536 SKV 538
            ++
Sbjct: 233 REI 235



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T    +   G+VL   G+T V+ T   +  +           LT  Y     A 
Sbjct: 12  REVKI-TRNYLKHPQGSVLIEVGDTKVICTAALEAKVPPFLRNSGKGWLTAEYAMLPMAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       R          I R+I RS+R +       +N   +  +V+Q D       
Sbjct: 71  QERNQRESVR-GHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  +  AL+              +P    V    V  ++GQ +L+   +ED      +
Sbjct: 128 ASITGSFVALVDLFRKMKEKGICETMPIRDYVSAVSVGVVDGQLLLDLEYEEDSRADVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G  + +  V+  A ++    D +   +       + + E   ++
Sbjct: 188 NVVMTGAGEFI-EVQGTAERVPFGRDRLTAMVELAGRGIRKLTEVQREI 235


>gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
 gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
          Length = 244

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 21/199 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +       +   GS L   GDT  +   T+    +++    L G  + 
Sbjct: 3   RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTATV----EDKVPPFLRGANKG 58

Query: 373 DFMMHYNFLPCATGEV--SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT        G  S R +   RL  RA+  V+   A    T+ +  ++ 
Sbjct: 59  WVTAEYAMLPRATDLRTGRERGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVL 118

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +A+ D              PI + +A  ++G V +     ++ D+
Sbjct: 119 QADGGTRTASITGAFVAMTDALYKLAVNGQIKKFPIKEFIAATSVGRVNNE----MVLDL 174

Query: 480 SGDEDHLGHMDFKVAGTDS 498
              ED    +D  +  T  
Sbjct: 175 CYKEDSAAEVDMNIVMTGG 193



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T VL T   +  +     G +   +T  Y     A     G   R  
Sbjct: 23  KYAEGSVLIEVGDTHVLCTATVEDKVPPFLRGANKGWVTAEYAMLPRATDLRTG---RER 79

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL- 138
            + +   + I R+I R++R + +     E    V  +V+Q D        S+  A  A+ 
Sbjct: 80  GKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVLQADGG--TRTASITGAFVAMT 137

Query: 139 ----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                      +   P +  +    V  +N + VL+    ED   +  +++ ++G  D  
Sbjct: 138 DALYKLAVNGQIKKFPIKEFIAATSVGRVNNEMVLDLCYKEDSAAEVDMNIVMTG-GDRF 196

Query: 186 LMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + ++    + +     V   +       K +I   S++    AK+
Sbjct: 197 VEIQGTGEEATFSRAEVNSLLDLAAGGIKSLIAFQSEVLGSIAKK 241


>gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110]
 gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110]
          Length = 240

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 108/243 (44%), Gaps = 22/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++ ++   + + GS +   G+T+ +   ++    +++    L G+ + 
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTASI----EDRVPRFLLGSGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E  R      S R     RL  R++   +        ++ I  ++ 
Sbjct: 61  WLTAEYRMLPSATQERQRRELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A++ G  +AL  A             P+  PVA I++GL+ +G+ F    D+
Sbjct: 121 QADAGTRTASITGGYVALGLAVNKLIKQGELIQSPLRFPVAAISVGLI-EGEAF---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V  T++  +  +Q   +    + + +   L  A+ G   +++  +KV
Sbjct: 177 NYPEDSKADIDFNVVMTENLDLIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKV 236

Query: 539 LSE 541
           L+E
Sbjct: 237 LNE 239



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  E     R S G+V+   GET VL T   +  +     G     LT  Y+    A 
Sbjct: 15  RPVNFELN-FTRFSAGSVVIECGETKVLCTASIEDRVPRFLLGSGQGWLTAEYRMLPSAT 73

Query: 71  GKIPGGYLRRE-SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
            +      RRE  + +     I R+I RS+R         E    +  +V+Q D      
Sbjct: 74  QER----QRRELLKLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQADAG--TR 127

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLD 175
             S+     AL L+             P   PV    V  I G+  L+    ++ +  +D
Sbjct: 128 TASITGGYVALGLAVNKLIKQGELIQSPLRFPVAAISVGLIEGEAFLDLNYPEDSKADID 187

Query: 176 LFVSGTQD-AVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
             V  T++  ++ V+  A +   +   + D +       K ++   +K+    
Sbjct: 188 FNVVMTENLDLIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKVLNEV 240


>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
           13514]
 gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
 gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 246

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 8/242 (3%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L   VR DGR  + +R++   VG++    GS++   G T A V    G RE   +   L
Sbjct: 8   LLQNGVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTA-VAAVYGPREM--HPRHL 64

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           S   R    + Y+  P +T +  +   PSRREI   ++ R A+ P +         + + 
Sbjct: 65  SLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVF 124

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            EI ++DGS+ +A++  +SLAL DAG+ +      + +G+     D +++ D++G ED+ 
Sbjct: 125 IEIIQADGSTRVASLTAASLALADAGIYMRD----LVVGVSVGLVDGVVVLDLNGLEDNY 180

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           G  D  V    + +    +    G     + + AL  A +G  ++       L    + +
Sbjct: 181 GEGDLPVGYMPN-LKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALKNKYMSI 239

Query: 547 GE 548
            E
Sbjct: 240 AE 241



 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +K+  G ++  +DG+ + +YG T  +A V   R +       P     + R Y +   
Sbjct: 24  REVKISVGVVS-NADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVR-YHMAPF 81

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                R+   P+  EI IS+++  ++ P  L  +  ++   V I ++Q D   S  V S+
Sbjct: 82  STKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADG--STRVASL 139

Query: 132 VAASAALMLSGL 143
            AAS AL  +G+
Sbjct: 140 TAASLALADAGI 151


>gi|254524022|ref|ZP_05136077.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
 gi|219721613|gb|EED40138.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
          Length = 241

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 24/221 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +  Q G  +   GS L   G+T+ +   ++    + +    L G    
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASV----ENRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R +   RL  R++   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+D              PI   VA +++G+         + 
Sbjct: 121 VLQADGGTRTAAITGAYVALVDAVNVLMKRGDIKRNPILGAVAAVSVGVY----RGTPVL 176

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIM 517
           D+   ED     D  V   D  G   +Q   +      + +
Sbjct: 177 DLDYAEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDEL 217



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ ++ G   R ++G+VL  +GET VL T   +  +     G+    +T  Y     A 
Sbjct: 15  RPVVIQRG-FTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTAEYGMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +     + I R+I RS+R    +    E  +    +V+Q D       
Sbjct: 74  -HTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +         +   P  G V    V    G  VL+    ED      +
Sbjct: 131 AAITGAYVALVDAVNVLMKRGDIKRNPILGAVAAVSVGVYRGTPVLDLDYAEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 240

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +RDI    G L    GS L   G T+ +          E       G+   
Sbjct: 4   REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAA----AASEGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT + S      G    R     RL  R++   +   A    T+ I  +
Sbjct: 60  WVTAEYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL D           AG P+ + VA I++G+V    D + + 
Sbjct: 120 VLQADGGTRTAAITGAYIALADAVAHLKGLGATAGEPLVESVAAISVGIV----DGVPML 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED   H D  V  T SG    +Q   +     +  +   L+ A  G   +    +
Sbjct: 176 DLPYVEDVRAHTDMNVVMTGSGAFVEVQGTAEGQPFDKAELDALLELAAGGCADLTRLQT 235

Query: 537 KVLSE 541
           + LS 
Sbjct: 236 EALSA 240



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 81/229 (35%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +++  G +   + G+ L  +G+T VL        +   + G     +T  Y     A 
Sbjct: 14  RDIRITRGWL-DHAQGSCLIEFGKTRVLCAAAASEGVPRWRKGSGLGWVTAEYAMLPQAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                    +  R       ISR++ RS+R          N   +  +V+Q D       
Sbjct: 73  HDRSSRESVK-GRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SL 174
            ++  A  AL             +G P    V    V  ++G  +L+ P +++ +    +
Sbjct: 130 AAITGAYIALADAVAHLKGLGATAGEPLVESVAAISVGIVDGVPMLDLPYVEDVRAHTDM 189

Query: 175 DLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+  A + V+  A     D   +   +      C  +    ++ 
Sbjct: 190 NVVMTGS-GAFVEVQGTAEGQPFDKAELDALLELAAGGCADLTRLQTEA 237


>gi|56707964|ref|YP_169860.1| ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670435|ref|YP_666992.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134302244|ref|YP_001122213.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|208780450|ref|ZP_03247790.1| ribonuclease PH [Francisella novicida FTG]
 gi|224457045|ref|ZP_03665518.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370452|ref|ZP_04986457.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|254372353|ref|ZP_04987844.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254874766|ref|ZP_05247476.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|61215787|sp|Q5NGI2|RNPH_FRATT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123169418|sp|Q14HY4|RNPH_FRAT1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228282|sp|A4IYU1|RNPH_FRATW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54112559|gb|AAV28913.1| NT02FT0689 [synthetic construct]
 gi|56604456|emb|CAG45491.1| Ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320768|emb|CAL08874.1| Ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134050021|gb|ABO47092.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568695|gb|EDN34349.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|151570082|gb|EDN35736.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3549]
 gi|208743596|gb|EDZ89900.1| ribonuclease PH [Francisella novicida FTG]
 gi|254840765|gb|EET19201.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159150|gb|ADA78541.1| ribonuclease PH [Francisella tularensis subsp. tularensis NE061598]
          Length = 235

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++              +  
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASV----VAGVPKFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  TA    T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V    + GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     LT  Y     +            
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLTAEYGMLPRST-HTRMDREAAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +               P    V    V   N + VL+   DED   +  +++ ++ +  
Sbjct: 139 DAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SNG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e]
 gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561]
 gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459]
 gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e]
 gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99]
 gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208]
 gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220]
 gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A]
          Length = 248

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  V     P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            + L +
Sbjct: 234 KETLGD 239



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSETELAELIALGKKGISELIEIQKE 235


>gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN]
 gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923]
 gi|585906|sp|P37939|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808596|sp|B8ZR59|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae]
 gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae]
 gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923]
          Length = 259

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 96/258 (37%), Gaps = 25/258 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R +    G  +   GS L   G T+ +   +      E       G+ 
Sbjct: 2   STRADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTAS----PTEGVPRWRKGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT   S      G  S R     RL  R++   +   A    T+ + 
Sbjct: 58  KGWLTAEYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVD 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A V G+ +AL DA              P+S  +A +++G+V    D  
Sbjct: 118 CDVLQADGGTRTAAVTGAYVALADAVTYLSAAGRLLDPRPLSCAIAAVSVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I  D+S +ED    +D  V  TD+G +  +Q   +      + +   L  A      +  
Sbjct: 174 IRVDLSYEEDSRAEVDMNVIATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFV 233

Query: 534 EMSKVLSESRLQLGEFTP 551
                L+     +    P
Sbjct: 234 AQRDALALPYQGMSPEGP 251



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 68/218 (31%), Gaps = 26/218 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD----GQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+VL  +G T V+ T             G     LT  Y     A           + R 
Sbjct: 28  GSVLIEFGHTKVMCTA-SPTEGVPRWRKGSGKGWLTAEYAMLPSAT-HTRSERESVKGRL 85

Query: 85  TENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM--- 139
           +     ISR+I RS+R          N   V  +V+Q D        ++  A  AL    
Sbjct: 86  SGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQADGG--TRTAAVTGAYVALADAV 143

Query: 140 --LSGL-------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVE 189
             LS         P    +    V  ++G+  ++   +ED +  +D+ V  T    L+  
Sbjct: 144 TYLSAAGRLLDPRPLSCAIAAVSVGVVDGRIRVDLSYEEDSRAEVDMNVIATDTGTLVEI 203

Query: 190 LEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
               +        +   +      C  +  A      +
Sbjct: 204 QGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDALAL 241


>gi|90415478|ref|ZP_01223412.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
 gi|90332801|gb|EAS47971.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
          Length = 239

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  E +R +           GS L   G T+ I   ++           L G    
Sbjct: 3   RPSGRRPEQLRPVKITRDFTCHAEGSVLIEFGKTKVICTASVTPG----VPRFLRGKGEG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G    R     RL  R++   +       +T+ I  +
Sbjct: 59  WVTAEYGMLPRSTGSRMDREAARGKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A++DA             P+   +A +++G+ K       + 
Sbjct: 119 VIQADGGTRTASITGACVAMVDAIRHLQRKKAILDDPLLCMIASVSVGIYKGTP----VL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V      G   +Q   +    SE  +   L  AK+G   ++    
Sbjct: 175 DLDYPEDSKAETDMNVVMNSEGGFIEVQGTAEAAPFSEEELSAMLGLAKQGIADLVRVQK 234

Query: 537 KVLSE 541
             L++
Sbjct: 235 MALAQ 239



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 33/218 (15%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGYLR 79
           ++G+VL  +G+T V+ T     S+  G   F        +T  Y     + G        
Sbjct: 25  AEGSVLIEFGKTKVICTA----SVTPGVPRFLRGKGEGWVTAEYGMLPRSTGSRMDREAA 80

Query: 80  RESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           R  +       I R+I RS+R      K  ++   +  +V+Q D        S+  A  A
Sbjct: 81  R-GKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDCDVIQADGG--TRTASITGACVA 137

Query: 138 L-----------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQD 183
           +            +   P    +    V    G  VL+   P   + +  +++ ++ ++ 
Sbjct: 138 MVDAIRHLQRKKAILDDPLLCMIASVSVGIYKGTPVLDLDYPEDSKAETDMNVVMN-SEG 196

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             + V+  A     SE+ +   +         ++    
Sbjct: 197 GFIEVQGTAEAAPFSEEELSAMLGLAKQGIADLVRVQK 234


>gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|61215900|sp|Q6AEK9|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 251

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 96/253 (37%), Gaps = 26/253 (10%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +   +R DGR ++ +R ++ +    ++  GS+L   G T+ +   +            +S
Sbjct: 1   MTDTIRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNG----VPRWMS 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           G  R      Y  LP +T +        G    R     RL  R++  V+   A    T+
Sbjct: 57  GKGRGWVTAEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDG 470
            +  ++ ++DG +  A + G+ +AL D                P+   V+ +++G+V   
Sbjct: 117 VLDCDVLQADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIV--- 173

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            D   + D++  ED     D  V  T  G    +Q   +      + +   L  A  G  
Sbjct: 174 -DGSPMLDLAYTEDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRSELNGLLDLALAGTT 232

Query: 530 HILNEMSKVLSES 542
            ++   S  L+  
Sbjct: 233 ALVAVQSAALAAP 245



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +E     R+++G+ L ++G T VL T  +   +     G+    +T  Y     + 
Sbjct: 16  RPVTIER-AWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGRGWVTAEYAMLPRST 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  R       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 75  NDRMDRESVK-GRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLDCDVLQADGG--TRT 131

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +               P    V    V  ++G  +L+    ED   + 
Sbjct: 132 AAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPMLDLAYTEDVRAET 191

Query: 173 SLDLFVSGT 181
            +++ V+G 
Sbjct: 192 DMNVVVTGR 200


>gi|212635008|ref|YP_002311533.1| ribonuclease PH [Shewanella piezotolerans WP3]
 gi|226736939|sp|B8CM22|RNPH_SHEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|212556492|gb|ACJ28946.1| Ribonuclease PH [Shewanella piezotolerans WP3]
          Length = 237

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R ++          GS L   GDT+ +   +     +E     L G  +
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASF----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R++   +        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G +  +Q   +    +   ++  L  AK G   I++  
Sbjct: 173 CDLEYIEDSAAETDMNVVMTETGKMIEIQGTAEGEPFTHEELLSLLDLAKHGIREIVDIQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 85/226 (37%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G+T VL T  ++  +     GQ    +T  Y     + 
Sbjct: 12  RPVTI-TRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       + +     I R+I RS+R         E  ++   +V+Q D       
Sbjct: 71  -HSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +       G+    P +  +    V    G+ + +    ED   +  +
Sbjct: 128 AAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   + +    E    + + +L  +    +  + +++   
Sbjct: 188 NVVMTETGKMIEIQGTAEGEPFTHEELLSLLDLAKHGIREIVDIQK 233


>gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
 gi|226736897|sp|B3PGE8|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
          Length = 239

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 24/232 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR+ + +R I       +   GS L   GDT+ I   ++           L G  + 
Sbjct: 3   RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASV----VAGVPSFLRGQGQG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G    R +   RL  R++   +   A    T+ +  +
Sbjct: 59  WLTAEYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL D              P+ + +A +++G+ +     + + 
Sbjct: 119 VIQADGGTRTASITGAWVALADAVAWLKAEGRVTDEPLKRAIASVSVGIYQ----GVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGR 528
           D+   ED     D  V   D  GI  +Q   +    +E      L  AK+G 
Sbjct: 175 DLDYPEDSAADTDMNVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQGI 226



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 24/218 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLAT---VVYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+++ T R  + ++G+VL  +G+T V+ T   V    S   GQ    LT  Y     + 
Sbjct: 13  RPIRI-TRRYTKHAEGSVLIEFGDTKVICTASVVAGVPSFLRGQGQGWLTAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
           G        R  +     + I R+I RS+R          N   +  +V+Q D       
Sbjct: 72  GTRMDREAAR-GKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            ++  P +  +    V    G  VL+    ++     D+
Sbjct: 129 ASITGAWVALADAVAWLKAEGRVTDEPLKRAIASVSVGIYQGVPVLDLDYPEDSAADTDM 188

Query: 177 -FVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNEC 211
             V G    ++ ++   EA   +E      +       
Sbjct: 189 NVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQGI 226


>gi|254373825|ref|ZP_04989308.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
 gi|151571546|gb|EDN37200.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
          Length = 235

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++ +   +   DS      
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVSGVPKFKKDS----GE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  TA    T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V      GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     LT  Y     +            
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVSGVPKFKKDSGEGWLTAEYGMLPRST-HTRMDREAAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +               P    V    V   N + VL+   DED   +  +++ ++ ++ 
Sbjct: 139 DAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SKG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|89255778|ref|YP_513140.1| ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115314270|ref|YP_762993.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501746|ref|YP_001427811.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009694|ref|ZP_02274625.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC200]
 gi|254367139|ref|ZP_04983171.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|290954430|ref|ZP_06559051.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|295312131|ref|ZP_06802940.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|122325696|sp|Q0BNH8|RNPH_FRATO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122501188|sp|Q2A562|RNPH_FRATH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228280|sp|A7NA52|RNPH_FRATF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89143609|emb|CAJ78797.1| Ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115129169|gb|ABI82356.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252961|gb|EBA52055.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|156252349|gb|ABU60855.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 235

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++              +  
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASV----VAGVPKFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  TA    T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V    + GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     LT  Y     +            
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLTAEYGMLPRST-HTRMDREAAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------GL------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +       G+      P    V    V   N + VL+   DED   +  +++ ++ +  
Sbjct: 139 DAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SNG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|241762326|ref|ZP_04760406.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373120|gb|EER62759.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 234

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 27/245 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS L   GDT+ +V  +L    +E+    L G  +
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASL----EERLPSWLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G  S R     RL  R++   +         + I  
Sbjct: 57  GWVTAEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL                PI   VA ++ G+ +     + +
Sbjct: 117 DVLQADGGTRTASISGGWVALRLAVNKLLASGQLTEDPIISQVAAVSCGISQ----GVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D       DS +  +Q   +     E  ++   + A+ G   I  E 
Sbjct: 173 LDLDYAEDSTAEADANFVMMGDSRLIEVQASAEGAPYDEEGLL---RLARMGCQQIFAEQ 229

Query: 536 SKVLS 540
            K ++
Sbjct: 230 KKAVA 234



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 21/227 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R L +ETG   R ++G+ L ++G+T VL T   +  L     G+    +T  Y     + 
Sbjct: 12  RSLSIETG-FTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       + +     I R+I RS+R         E Q+    +V+Q D  +    
Sbjct: 71  -HSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQADGGTRTAS 129

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
           +S    +  L ++ L         P    V         G  VL+    ED   +   + 
Sbjct: 130 ISGGWVALRLAVNKLLASGQLTEDPIISQVAAVSCGISQGVPVLDLDYAEDSTAEADANF 189

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            + G    ++ V+  A     D     +      C+ +     K   
Sbjct: 190 VMMG-DSRLIEVQASAEGAPYDE-EGLLRLARMGCQQIFAEQKKAVA 234


>gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii RSA 334]
 gi|61216043|sp|Q83EL9|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043758|sp|A9KGR9|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043759|sp|A9NB33|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii RSA 334]
          Length = 237

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +S      +   GS L   G+T+ I   ++     E     L  +++
Sbjct: 1   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASI----VEGVPRFLKNSEQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   L      PYT+ I  
Sbjct: 57  GWLTAEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +A+++              P+   VA +++G+       + +
Sbjct: 117 DVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIY----KGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   H D  V  TD+     +Q   +        +   +  A+ G   I+ + 
Sbjct: 173 LDLDYAEDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQ 232

Query: 536 SKVLS 540
            + LS
Sbjct: 233 QEALS 237



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RPL   T +  R ++G+VL T G T V+       S+ +G   F        LT  Y   
Sbjct: 12  RPLSFTT-QFTRYAEGSVLVTLGNTKVICNA----SIVEGVPRFLKNSEQGWLTAEYGML 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLE- 123
             +          R  +     + I R+I RS+R              +  +V+Q D   
Sbjct: 67  PRSTHSRMDREASR-GKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQADGGT 125

Query: 124 ----SSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQG--- 172
                +   ++M+ A   L   G+    P +  V    V    G  VL+    ED     
Sbjct: 126 RTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYAEDSNAHT 185

Query: 173 SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++ ++   DA + ++   E +      +   I    +  K +IE   + 
Sbjct: 186 DMNVVMT-DNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEA 235


>gi|90023323|ref|YP_529150.1| ribonuclease PH [Saccharophagus degradans 2-40]
 gi|123395477|sp|Q21EE1|RNPH_SACD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89952923|gb|ABD82938.1| RNAse PH [Saccharophagus degradans 2-40]
          Length = 239

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  E +RD++      +   GS L   GDT+ I   ++    +      L G  + 
Sbjct: 3   RPSGRAPEQLRDVTITRQFTRHAEGSVLVCFGDTKVICTASV----EAGVPRFLKGQGQG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G    R +   RL  R++   +  TA   +++ I  +
Sbjct: 59  WITAEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL+D              P+   VA +++G+     + + + 
Sbjct: 119 VIQADGGTRTASITGALVALVDAIRYLQREKMITTDPLVHMVAAVSVGIY----EGVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  +  T+  G+  +Q   +    ++         AK+G   ++    
Sbjct: 175 DLDYPEDSNAETDMNMVMTEEGGLIEIQGTAEKKPFTDEQFAGMFSLAKKGVAELVALQK 234

Query: 537 KVLSE 541
             L++
Sbjct: 235 AALAQ 239



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + + T +  R ++G+VL  +G+T V+ T   +  +     GQ    +T  Y     + 
Sbjct: 13  RDVTI-TRQFTRHAEGSVLVCFGDTKVICTASVEAGVPRFLKGQGQGWITAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G   G    R  +     + I R+I RS+R         E  ++   +V+Q D       
Sbjct: 72  GSRMGREAAR-GKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+  A  AL           M++  P    V    V    G  VL+   P     +  +
Sbjct: 129 ASITGALVALVDAIRYLQREKMITTDPLVHMVAAVSVGIYEGVPVLDLDYPEDSNAETDM 188

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++  +  ++ ++  A +   +++               ++         
Sbjct: 189 NMVMT-EEGGLIEIQGTAEKKPFTDEQFAGMFSLAKKGVAELVALQKAALAQ 239


>gi|294085187|ref|YP_003551947.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664762|gb|ADE39863.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 245

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 24/228 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R I+ + G      GS L   G+T  +   ++    DE+    L  + + 
Sbjct: 3   RPSGRAYDALRSITLESGFSLHAEGSCLVRCGNTHVLCTASV----DERVPSFLRNSGKG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R +   RL  R++  V    A     ++I  +
Sbjct: 59  WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL  A             PI   VA I+ G+ K       + 
Sbjct: 119 VIQADGGTRTASITGAWVALKIACEKLLLAGAITRQPIIDNVAAISCGVYKGNS----VL 174

Query: 478 DISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQA 524
           D+  DED    +D     + D G+  +Q   +    S +++   L  A
Sbjct: 175 DLDYDEDSNAEIDANFVMSADGGLVEIQATGEEKPFSRDVLNAMLDLA 222



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 34/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           R + LE+G  +  ++G+ L   G T VL T     S+ +    F        +T  Y   
Sbjct: 13  RSITLESG-FSLHAEGSCLVRCGNTHVLCTA----SVDERVPSFLRNSGKGWVTAEYGML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLES 124
             +             +     + I R+I RS+R +       E Q  +  +V+Q D   
Sbjct: 68  PRST-HTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDCDVIQADGG- 125

Query: 125 SPHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                S+  A  AL            ++  P    V         G  VL+   DED   
Sbjct: 126 -TRTASITGAWVALKIACEKLLLAGAITRQPIIDNVAAISCGVYKGNSVLDLDYDEDSNA 184

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   +  +S     ++ ++    +   S DV+   +         +     +  +
Sbjct: 185 EIDANFVMSA-DGGLVEIQATGEEKPFSRDVLNAMLDLAEAGGATLFALQDQAVQ 238


>gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121]
 gi|259494126|sp|C1A1V2|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121]
          Length = 261

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G+T+ +   ++    +E       G+   
Sbjct: 4   REDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASV----EEGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A V G+ +AL+DA              PIS  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAVTGAYVALVDAVTYLRAADLLSDPQPISCGIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A  G   +    
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQ 235

Query: 536 SKVLSESRL 544
            + L+E   
Sbjct: 236 RQALAEPYP 244



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 88/254 (34%), Gaps = 27/254 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +K+  G  +  + G+VL  +G T V+ T   +  +   + G     LT  Y     A 
Sbjct: 14  RTVKITRGFTSHPA-GSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G    + +       ISR+I RS+R         E  +    +V+Q D       
Sbjct: 73  -HTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCDVLQADGG--TRT 129

Query: 129 VSMVAASAAL-----------MLSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL           +LS   P    +    V  ++G+  L+ P  ++ +  +D
Sbjct: 130 AAVTGAYVALVDAVTYLRAADLLSDPQPISCGIAAVSVGVVDGRVRLDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           + V  T    L+      +        +   +      C+ + E   +   +    P V+
Sbjct: 190 MNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQRQ--ALAEPYPGVL 247

Query: 233 DSKDFSKLEEEMSQ 246
                 + +++   
Sbjct: 248 PEPKNPEPKKKFGA 261


>gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425]
 gi|254808586|sp|B8HPC6|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425]
          Length = 239

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 22/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR S  +R IS + G  +   GS L   G TQ +  VT+           L G  + 
Sbjct: 5   RPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPG----VPKFLEGRGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   L        TL + +++ 
Sbjct: 61  WLTAEYRMLPAATPQRQEREMLKLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + GS +AL D              PI   VA +++GL+ +G+ F    D+
Sbjct: 121 QADAGTRTTAITGSFVALADAIDQLLQAGELQRSPIRNYVAAVSVGLL-EGEPF---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           S  ED    +DF V  T+S  I  +Q   +    S   +   L  A+ G   ++     V
Sbjct: 177 SYQEDVAASVDFNVVMTESLQILELQGTAEGESFSRTQLNQILDVAEVGIRELIAAQKSV 236

Query: 539 LSE 541
           L +
Sbjct: 237 LGQ 239



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 26/226 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+  E G   R + G+VL   G+T VL  V V     K  +G+    LT  Y+    A 
Sbjct: 15  RPISFERG-FTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWLTAEYRMLPAA- 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
              P    R   + +     I R+I RS+R         E  ++   +V+Q D       
Sbjct: 73  --TPQRQEREMLKLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQADAG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            ++  +  AL            L   P    V    V  + G+  L+    ED   S+D 
Sbjct: 129 TAITGSFVALADAIDQLLQAGELQRSPIRNYVAAVSVGLLEGEPFLDLSYQEDVAASVDF 188

Query: 177 FVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            V  T+   +L ++   E    S   +   +       + +I A  
Sbjct: 189 NVVMTESLQILELQGTAEGESFSRTQLNQILDVAEVGIRELIAAQK 234


>gi|163750741|ref|ZP_02157977.1| ribonuclease PH [Shewanella benthica KT99]
 gi|161329585|gb|EDQ00577.1| ribonuclease PH [Shewanella benthica KT99]
          Length = 237

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R ++          GS L   G+T+ +   +     +      L G  +
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASF----EVGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R++   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G +  +Q   +    S   ++  L+ AK G   I++  
Sbjct: 173 CDLEYIEDSEAETDMNVVMTETGQMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +GET VL T    V       G+    +T  Y     + 
Sbjct: 12  RPVTI-TRQFTAHAEGSVLVEFGETKVLCTASFEVGVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       + +     I R+I RS+R         E  +I   +V+Q D       
Sbjct: 71  -HTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIIIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRL---DEDQGSL 174
            ++  A  AL+ +       G+    P +  +    V    G+ + +       E +  +
Sbjct: 128 AAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSEAETDM 187

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   + +    E    S + +L  +    +  + +++   
Sbjct: 188 NVVMTETGQMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQK 233


>gi|328676457|gb|AEB27327.1| Ribonuclease PH [Francisella cf. novicida Fx1]
          Length = 235

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++              +  
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASV----VAGVPKFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  TA    T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V      GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     LT  Y     +            
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLTAEYGMLPRST-HTRMDREAAR 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +               P    V    V   N + VL+   DED   +  +++ ++ ++ 
Sbjct: 139 DAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SKG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille]
 gi|151279916|gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille]
          Length = 244

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R  GR ++ +R I       +   GS L   GDT+ I   ++    +++    L G  
Sbjct: 4   ENRPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASI----EDRVPGFLKGKG 59

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP +T          G  S R     RL  R++       A    TL + 
Sbjct: 60  QGWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLD 119

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +A  DA            +P+   VA I++G+ K       
Sbjct: 120 CDVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQP---- 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+  DED     D  +  TD+G    +Q   +        M   L  A+ G   ++  
Sbjct: 176 VLDLDYDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVL 235

Query: 535 MSKV 538
             + 
Sbjct: 236 QKQA 239



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G+    LT  Y     +            
Sbjct: 26  KHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTAEYGMLPRST-HTRMDREAAR 84

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVV--SMVAASAA 137
            + +     I R+I RS+R  F      E    +  +V+Q D  +    +  +MVAA  A
Sbjct: 85  GKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQADGGTRTAAITGTMVAAYDA 144

Query: 138 LM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                    +  +P +  V    V    GQ VL+   DED      +++ ++     + +
Sbjct: 145 FSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDEDSDCDTDMNIVMTDAGHFIEV 204

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
               E        +   +    +  + +I    +   + A
Sbjct: 205 QGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQALAIAA 244


>gi|288956860|ref|YP_003447201.1| ribonuclease PH [Azospirillum sp. B510]
 gi|288909168|dbj|BAI70657.1| ribonuclease PH [Azospirillum sp. B510]
          Length = 239

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S + G  +   GS +   G+T  +   ++    DE     L  T  
Sbjct: 1   MRPSGRALDQLRTVSLEPGFSRYAEGSCMVRFGNTHVLCTASV----DETVPRFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   +      G  S R     RL  RA+  V  ++A     ++I  
Sbjct: 57  GWVTAEYGMLPRSTHSRTDREAAKGKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL  A            +P++  VA ++ G+ +       +
Sbjct: 117 DVIQADGGTRTAAITGSYVALHLAFQHLIQIGALKTMPLTDQVAAVSCGIYQGN----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D     T   GI  +Q   +    SE   +  L  A++G   +    
Sbjct: 173 LDLDYDEDSKAQADANFVLTGKAGIVEIQGTAEESPFSEPQFMELLALARKGVTELAALQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 KQA 235



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69
           R + LE G  +R ++G+ +  +G T VL T        R LK+    + +T  Y     +
Sbjct: 12  RTVSLEPG-FSRYAEGSCMVRFGNTHVLCTASVDETVPRFLKNTGLGW-VTAEYGMLPRS 69

Query: 70  V-GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSP 126
              +      +   + +     I R+I R++R +  +    E Q  +  +V+Q D     
Sbjct: 70  THSRTDREAAK--GKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDCDVIQADGG--T 125

Query: 127 HVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
              ++  +  AL L+            +P    V         G  VL+   DED   Q 
Sbjct: 126 RTAAITGSYVALHLAFQHLIQIGALKTMPLTDQVAAVSCGIYQGNAVLDLDYDEDSKAQA 185

Query: 173 SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
             +  ++G +  ++ ++  A +   SE   ++ +         +     + 
Sbjct: 186 DANFVLTG-KAGIVEIQGTAEESPFSEPQFMELLALARKGVTELAALQKQA 235


>gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291]
 gi|61215988|sp|Q73X87|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 259

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 25/256 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G  +   GS L   G T+ +   ++     E       G+   
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVT----EGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A      +    
Sbjct: 176 VDLPYEEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQ 235

Query: 536 SKVLSESRLQLGEFTP 551
            + L      +    P
Sbjct: 236 REALKLPYPGVLPEGP 251



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 82/235 (34%), Gaps = 31/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RPL +  G     + G+VL  +G T V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPLVITRGFTEHPA-GSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTAEYAMLPSAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                     + R +     ISR+I RS+R          N   V  +V+Q D       
Sbjct: 73  -HTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDARAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T    L+      +       + D +LDA       C  +  A  +  K+
Sbjct: 190 MNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDA---ALAACDKLFAAQREALKL 241


>gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 291

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 106/282 (37%), Gaps = 52/282 (18%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE---- 360
            ++ D+  R+DGR +  +R I A++G+  +  GS+   +G+T+A+ VV  G  E      
Sbjct: 5   ELLSDQGYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVV-YGPHEVCVCVC 63

Query: 361 --------QY--VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
                   Q     S +   R      Y+    +T E  R     R+        ++   
Sbjct: 64  VCVCVCVCQMRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFE 123

Query: 411 PVLPQTAQFPYTLRIVS-------------------------------EITESDGSSSMA 439
             +         + I                                 +I +SDG +   
Sbjct: 124 AAVMTQLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSV 183

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            V  ++LA++DAG+P+   V    +G V +      L+D+   E+  G     +A    G
Sbjct: 184 CVNAATLAVIDAGIPMRDYVCACTVGFVDETP----LADLCYAEESGGVSSLGLALLPRG 239

Query: 500 --ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             I  +QMD ++   + + ++ A   A +G   +L+E+ +  
Sbjct: 240 GQIALVQMDARLHQDNLDALMEAAMTACKGVSKVLDEVVRQH 281



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 87/269 (32%), Gaps = 61/269 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--------------------KDG 53
           R ++   G  A Q+DG+     G T  LA V     +                    +  
Sbjct: 23  RKIQARMGVFA-QADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQMRGSRSRAR 81

Query: 54  QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV 113
            D   +   Y   T++  +      +R          +S  + ++            +Q+
Sbjct: 82  HDRAVINCQYSMATFSTAE-----RKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQI 136

Query: 114 IINV--------------------MQHDLESSPHV-----------VSMVAASAALMLSG 142
            I V                    +    +  P +           V + AA+ A++ +G
Sbjct: 137 DIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAATLAVIDAG 196

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDV 199
           +P    V    V +++   + +    E+     SL L +      + +V+++A  L +D 
Sbjct: 197 IPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLPRGGQIALVQMDAR-LHQDN 255

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +   +      CK V + + ++ +   +E
Sbjct: 256 LDALMEAAMTACKGVSKVLDEVVRQHLQE 284


>gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104]
 gi|166228290|sp|A0QD04|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104]
          Length = 259

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 25/256 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G  +   GS L   G T+ +   ++     E       G+   
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVT----EGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A      +    
Sbjct: 176 VDLPYEEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQ 235

Query: 536 SKVLSESRLQLGEFTP 551
            + L      +    P
Sbjct: 236 REALKLPYPGVLPEGP 251



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 82/235 (34%), Gaps = 31/235 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RPL +  G     + G+VL  +G T V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPLVITRGFTEHPA-GSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTAEYAMLPSAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                     + R +     ISR+I RS+R          N   V  +V+Q D       
Sbjct: 73  -HTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAFVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDARAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T    L+      +       + D +LDA       C  +  A  +  K+
Sbjct: 190 MNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDA---ALAACDKLFAAQREALKL 241


>gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
 gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
          Length = 239

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +S      +   GS L   G+T+ I   ++     E     L  +++
Sbjct: 3   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASI----VEGVPRFLKNSEQ 58

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++   L      PYT+ I  
Sbjct: 59  GWLTAEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +A+++              P+   VA +++G+       + +
Sbjct: 119 DVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIY----KGVPV 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   H D  V  TD+     +Q   +        +   +  A+ G   I+ + 
Sbjct: 175 LDLDYAEDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQ 234

Query: 536 SKVLS 540
            + LS
Sbjct: 235 QEALS 239



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RPL   T +  R ++G+VL T G T V+       S+ +G   F        LT  Y   
Sbjct: 14  RPLSFTT-QFTRYAEGSVLVTLGNTKVICNA----SIVEGVPRFLKNSEQGWLTAEYGML 68

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLE- 123
             +          R  +     + I R+I RS+R              +  +V+Q D   
Sbjct: 69  PRSTHSRMDREASR-GKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQADGGT 127

Query: 124 ----SSPHVVSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQG--- 172
                +   ++M+ A   L   G+    P +  V    V    G  VL+    ED     
Sbjct: 128 RTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYAEDSNAHT 187

Query: 173 SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +++ ++   DA + ++   E +      +   I    +  K +IE   + 
Sbjct: 188 DMNVVMT-DNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEA 237


>gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f]
 gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f]
          Length = 256

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 19/242 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +RDI+   G  +   GS+L   G T+ +   ++     E       G+  
Sbjct: 2   IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASVT----EGVPRWRKGSGL 57

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G    R     RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA----GVP--ISKPVAGIAMGLVKDGDDFIILSDISG 481
           ++  +DG +  A + G+ +AL DA    G P  I   V  +++G+V      + + D++ 
Sbjct: 118 DVLLADGGTRTAAITGAYVALADACRWLGRPSAIVTSVCAVSVGIV----KGVPMLDLAY 173

Query: 482 DEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  V  T   G   +Q   +        +   L  A  G   +    +  L+
Sbjct: 174 TEDSTADTDMNVVCTGTGGFVEVQGTAEGTPFDRAALDELLNLATAGCNRLTEIQNAALA 233

Query: 541 ES 542
           + 
Sbjct: 234 QP 235



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 73/227 (32%), Gaps = 20/227 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L + G T VL        +   + G     +T  Y     A          R  R
Sbjct: 25  AEGSALISAGLTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATHTRNDRESVR-GR 83

Query: 84  PTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                  ISR+I RS+R     K    N   +  +V+  D        ++  A  AL  +
Sbjct: 84  IGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLLADGG--TRTAAITGAYVALADA 141

Query: 142 ----GLP--FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-LMVELE 191
               G P      V    V  + G  +L+    ED      +++  +GT   V +    E
Sbjct: 142 CRWLGRPSAIVTSVCAVSVGIVKGVPMLDLAYTEDSTADTDMNVVCTGTGGFVEVQGTAE 201

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS 238
                   + + +      C  + E  +  A +    P      + +
Sbjct: 202 GTPFDRAALDELLNLATAGCNRLTEIQN--AALAQPAPAGPPRPERA 246


>gi|84514911|ref|ZP_01002274.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
 gi|84511070|gb|EAQ07524.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
          Length = 235

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 84/220 (38%), Gaps = 22/220 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R+++ +  +     GS L   G+T  +   T+    D++    L  +  
Sbjct: 1   MRPSGRQINEMRNVTIETNVTMHAEGSCLIKCGNTHVLCTATI----DDRVPPFLKNSGL 56

Query: 372 NDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP AT    R       S R     RL  R++   + + A     + +  +
Sbjct: 57  GWVTAEYGMLPRATNTRMRREAKEGQSGRTQEIQRLIGRSLRAGVDRVALGERQIIVDCD 116

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +A       LM  G     P+  PVA I+ G+    +    + 
Sbjct: 117 VIQADGGTRCASITGGWVALKLAVLKLMKTGQIISDPLVDPVAAISCGIYAGQE----VL 172

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           D+   ED    +D     T   +  +QM  +    S   M
Sbjct: 173 DLDYPEDSEAGVDGNFVMTGGRLVEVQMSAEGATFSRAQM 212



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 75/226 (33%), Gaps = 28/226 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET  +   ++G+ L   G T VL T   D  +           +T  Y     A 
Sbjct: 12  RNVTIETN-VTMHAEGSCLIKCGNTHVLCTATIDDRVPPFLKNSGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
                  +RRE+    +     I R+I RS+R    +    E Q+I   +V+Q D     
Sbjct: 71  N----TRMRREAKEGQSGRTQEIQRLIGRSLRAGVDRVALGERQIIVDCDVIQADGG--T 124

Query: 127 HVVSMVAASAALMLSGL-----------PFEGPVVGAQVDYINGQYVLN---PRLDEDQG 172
              S+     AL L+ L           P   PV         GQ VL+   P   E   
Sbjct: 125 RCASITGGWVALKLAVLKLMKTGQIISDPLVDPVAAISCGIYAGQEVLDLDYPEDSEAGV 184

Query: 173 SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
             +  ++G +   + +  E    S   +   +         +    
Sbjct: 185 DGNFVMTGGRLVEVQMSAEGATFSRAQMDGLLGLAEKGVAELTALQ 230


>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 246

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 10/233 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R + A VG++    GS+LF  G+TQ + VV  G  E      
Sbjct: 4   EFVSPEGLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVV-YGPHEVHNKAH 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    +      Y+    +TGE  R G   RR      +  + +   +         + 
Sbjct: 63  QLH--DKALVRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQID 120

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  +S+AL DAG+P+   V   A G +        L D++  ED
Sbjct: 121 IYVQVLQADGGTRAACINAASMALADAGIPMRDLVVSCAAGYLNSTP----LLDLNYQED 176

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNE 534
             G  D  V        ++ +QMD K+   +   ++ +A + AK        +
Sbjct: 177 SGGGPDLVVGYFPKLEKLSLLQMDSKVSIETFEKVLELATEGAKAVATFTREK 229



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 17/197 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+ L   G T V+A V     + +      D   +   Y    ++ G+          
Sbjct: 34  ADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALVRCEYSMAAFSTGERRRRGK---- 89

Query: 83  RPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
                   +S +I +++          +++  + + V+Q D         + AAS AL  
Sbjct: 90  -TDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVLQADGG--TRAACINAASMALAD 146

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS--GTQDAVLMVELEANQLSE 197
           +G+P    VV     Y+N   +L+    ED G   DL V      + + ++++++  +S 
Sbjct: 147 AGIPMRDLVVSCAAGYLNSTPLLDLNYQEDSGGGPDLVVGYFPKLEKLSLLQMDSK-VSI 205

Query: 198 DVVLDAIIFGHNECKPV 214
           +     +       K V
Sbjct: 206 ETFEKVLELATEGAKAV 222


>gi|326318286|ref|YP_004235958.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375122|gb|ADX47391.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 253

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +           GS L   G T+ +   ++    +E+      G+   
Sbjct: 12  RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASV----EERVPPHKRGSGEG 67

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++  V    A    T+++  +
Sbjct: 68  WVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCD 127

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D           A  PI+ P+A +++G+V+       L 
Sbjct: 128 VLQADGGTRTAAITGAWVAAHDAVSALLAGGKIAASPITAPLAAVSVGIVQGTP----LL 183

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D G    +Q   +    + + M   L  A +G   ++    
Sbjct: 184 DLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGVAFTRSEMDRLLDLAAQGVDALIALQR 243

Query: 537 KVLSES 542
           + LS  
Sbjct: 244 QALSVP 249



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 20/226 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T      ++G+VL  +G T VL T   +  +     G     +T  Y     A 
Sbjct: 22  RPVRI-TRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRAT 80

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH- 127
                       + +     I R+I RS+R +F      E   Q+  +V+Q D  +    
Sbjct: 81  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAA 139

Query: 128 -----VVSMVAASAALM---LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-F 177
                V +  A SA L    ++  P   P+    V  + G  +L+    ED Q   D+  
Sbjct: 140 ITGAWVAAHDAVSALLAGGKIAASPITAPLAAVSVGIVQGTPLLDLEYTEDVQCDTDMNV 199

Query: 178 VSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
           V       + V+  A  +  +   +   +         +I    + 
Sbjct: 200 VMMDGGRFVEVQGTAEGVAFTRSEMDRLLDLAAQGVDALIALQRQA 245


>gi|282858123|ref|ZP_06267318.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
 gi|282584045|gb|EFB89418.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
          Length = 251

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
            ++ +R ++ +        GS +   G T+ +   T+    +++    L G  +      
Sbjct: 13  RADALRPVTMERNWNVYAEGSCVISCGRTRVLCTATV----EDKVPPFLRGQGKGWVTAE 68

Query: 378 YNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           Y+ LP +T          G  + R     RL  R++   +   A     + +  ++ ++D
Sbjct: 69  YSLLPRSTMTRVPRDSTKGRINGRSQEIQRLIGRSLRAAVDLDALGERCVTLDCDVIQAD 128

Query: 434 GSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           G +  A++ G+ +AL+D             +P+  PVA +++G V       +L D+  +
Sbjct: 129 GGTRTASITGAYVALVDALRWLRGQGAFEKLPLKSPVAAVSVGKV----RGQLLLDLCYE 184

Query: 483 EDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           ED    +DF V     G    +Q   + G  S   M   L  A  G   ++     VL  
Sbjct: 185 EDSTAEVDFNVVMNGQGDFIEVQGTGEGGVFSREEMAGMLDLASAGIHELMALQRHVLRW 244

Query: 542 SRLQLGE 548
           +  ++ +
Sbjct: 245 ADEEVRK 251



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 36/243 (14%)

Query: 3   DVHTVEIEWAG--RPLKLETGRIARQ----SDGAVLATYGETVVLATVVYDRSLKD---G 53
           ++HT+  E A   RP+ +E     R     ++G+ + + G T VL T   +  +     G
Sbjct: 5   EIHTLTRERADALRPVTME-----RNWNVYAEGSCVISCGRTRVLCTATVEDKVPPFLRG 59

Query: 54  QDFFPLTVNYQERTYA-VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE-- 110
           Q    +T  Y     + + ++P    +   R       I R+I RS+R         E  
Sbjct: 60  QGKGWVTAEYSLLPRSTMTRVPRDSTK--GRINGRSQEIQRLIGRSLRAAVDLDALGERC 117

Query: 111 TQVIINVMQHDLESSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYING 159
             +  +V+Q D        S+  A  AL+ +            LP + PV    V  + G
Sbjct: 118 VTLDCDVIQADGG--TRTASITGAYVALVDALRWLRGQGAFEKLPLKSPVAAVSVGKVRG 175

Query: 160 QYVLNPRLDED---QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVI 215
           Q +L+   +ED   +   ++ ++G  D + +    E    S + +   +         ++
Sbjct: 176 QLLLDLCYEEDSTAEVDFNVVMNGQGDFIEVQGTGEGGVFSREEMAGMLDLASAGIHELM 235

Query: 216 EAI 218
              
Sbjct: 236 ALQ 238


>gi|254475610|ref|ZP_05088996.1| ribonuclease PH [Ruegeria sp. R11]
 gi|214029853|gb|EEB70688.1| ribonuclease PH [Ruegeria sp. R11]
          Length = 227

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 24/235 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +S + G  +   GS L   GDT  +   T+    +++    + GT        Y  L
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGTGLGWVTAEYGML 56

Query: 382 PCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT    R     G    R +   RL  RA+   + + A     + I  ++ ++DG + 
Sbjct: 57  PRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTR 116

Query: 438 MATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G  +A       LM AG     P+  PVA ++ G+         + D+   ED  
Sbjct: 117 CASITGGWVALRLAVNKLMKAGDVTIDPLVDPVAAVSCGIYAGQP----VLDLDYPEDSE 172

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
             +D     T SG +  +QM  +    S + M   +  A +G   +        +
Sbjct: 173 AGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTAELAEIQKAACA 227



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +        L   T  Y     A 
Sbjct: 2   RAVSIETG-FTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRAT 60

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 61  N----TRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGG-- 114

Query: 126 PHVVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+         +   P   PV         GQ VL+   P   E  
Sbjct: 115 TRCASITGGWVALRLAVNKLMKAGDVTIDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAG 174

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   + + +  E +  S D + + +         + E   
Sbjct: 175 VDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTAELAEIQK 223


>gi|163737986|ref|ZP_02145402.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
 gi|161388602|gb|EDQ12955.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
          Length = 227

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 88/234 (37%), Gaps = 24/234 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +S + G  +   GS L   GDT  +   T+    +++    + G+        Y  L
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATI----EDRVPPFIKGSGLGWVTAEYGML 56

Query: 382 PCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT    R     G    R +   RL  RA+   + + A     + I  ++ ++DG + 
Sbjct: 57  PRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTR 116

Query: 438 MATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G  +A       LM  G     P+  PVA ++ G+         + D+   ED  
Sbjct: 117 CASITGGWVALRLAVNKLMKTGEVKIDPLVDPVAAVSCGIYAGQP----VLDLDYPEDSE 172

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             +D     T SG +  +QM  +    S   M   +  A +G   +        
Sbjct: 173 AGVDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQKAAC 226



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L   G+T VL T   +  +     G     +T  Y     A 
Sbjct: 2   RAVSIETG-FTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 60

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    +     + I R+I R++R    +    E Q+    +V+Q D    
Sbjct: 61  N----TRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGG-- 114

Query: 126 PHVVSMVAASAALMLS----------GL-PFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL L+           + P   PV         GQ VL+   P   E  
Sbjct: 115 TRCASITGGWVALRLAVNKLMKTGEVKIDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAG 174

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G+   + + +  E +  S + +   +         + E   
Sbjct: 175 VDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQK 223


>gi|146328830|ref|YP_001209573.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
 gi|166228278|sp|A5EV74|RNPH_DICNV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146232300|gb|ABQ13278.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
          Length = 238

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R++  +  +     GS+L   G TQ +   ++    +E+    L G  +
Sbjct: 1   MRPHHRLPDQMRELHIERAVNCHAEGSALITLGRTQVLCTASI----EERVPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E S      G    R     RL  R++  V+  +A    ++ +  
Sbjct: 57  GWVTAEYGMLPRATHERSTREAARGKQQGRTQEIQRLIGRSLRAVVDLSALGERSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL D              P+   +A +++G  +       L
Sbjct: 117 DVLQADGGTRTAAISGGFIALADAIRVLMQQGRLKANPLRGQLAAVSVGFYQGE----AL 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +   D+G +  +Q   +    S   M   L  A++G   I+ E 
Sbjct: 173 LDLEYCEDSAAETDMNIVMNDAGALIEIQGTAEGRAFSRQEMNALLDLAEKGISEIMAEQ 232

Query: 536 SKV 538
            +V
Sbjct: 233 RRV 235



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 25/216 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L T G T VL T   +  +     GQ+   +T  Y     A  +       R  +
Sbjct: 24  AEGSALITLGRTQVLCTASIEERVPPFLRGQNQGWVTAEYGMLPRATHERSTREAAR-GK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM-- 139
                  I R+I RS+R +       E  +    +V+Q D        ++     AL   
Sbjct: 83  QQGRTQEIQRLIGRSLRAVVDLSALGERSITLDCDVLQADGG--TRTAAISGGFIALADA 140

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                    L   P  G +    V +  G+ +L+    ED   +  +++ ++    A++ 
Sbjct: 141 IRVLMQQGRLKANPLRGQLAAVSVGFYQGEALLDLEYCEDSAAETDMNIVMN-DAGALIE 199

Query: 188 VEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++   E    S   +   +         ++    ++
Sbjct: 200 IQGTAEGRAFSRQEMNALLDLAEKGISEIMAEQRRV 235


>gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816]
          Length = 228

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 23/232 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  V     P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+ 
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKE 225



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 26/204 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNE 210
           +    + +  E  + + I  G  E
Sbjct: 202 QGTGEEATFSETELAELIALGKKE 225


>gi|33151538|ref|NP_872891.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
 gi|61216021|sp|Q7VP10|RNPH_HAEDU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33147758|gb|AAP95280.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
          Length = 238

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R++  +R +       +   GS L   G+T+ +   ++    +E     L G Q+
Sbjct: 1   MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASI----EESVPRFLKGQQQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  S R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRATHSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              P+   VA I++G+V++      +
Sbjct: 117 DVIQADGGTRTAAITGACVALQDAIHKLIADGVLKTNPLKGLVAAISVGIVENE----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G +  +Q   +    S   ++  L  A +G   +    
Sbjct: 173 CDLEYVEDAKAETDMNVVMVEDGRLVEVQGTAEGKPFSHMELLQLLDLADQGINQLFEVQ 232

Query: 536 SKVLSE 541
            + L+E
Sbjct: 233 RQALAE 238



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+K+ T    R ++G+VL  +GET VL     + S+     GQ    +T  Y     A 
Sbjct: 12  RPVKI-TRHYTRYAEGSVLIEFGETKVLCNASIEESVPRFLKGQQQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESS 125
                   +RE    + +   + I R+I R++R +       E    +  +V+Q D    
Sbjct: 71  ----HSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL   +  L         P +G V    V  +  + V +    ED   +
Sbjct: 125 TRTAAITGACVALQDAIHKLIADGVLKTNPLKGLVAAISVGIVENEAVCDLEYVEDAKAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
             +++ +      ++ V+  A 
Sbjct: 185 TDMNVVMV-EDGRLVEVQGTAE 205


>gi|332711140|ref|ZP_08431074.1| RNAse PH [Lyngbya majuscula 3L]
 gi|332350122|gb|EGJ29728.1| RNAse PH [Lyngbya majuscula 3L]
          Length = 234

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 22/238 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R I  +    +   GS L   G+T+ +  VT+     E+    L  T   
Sbjct: 5   RPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTV----QEEVPRFLKDTGSG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E  R      S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPGATPERQRRELLKLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVI 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL+D              P+   VA +++GL+ +G+ F    D+
Sbjct: 121 QADAGTRTTSITGGYVALVDAVDKLVKTGVLERSPLIHQVAAVSVGLL-EGEPF---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +  ED    +DF V   D  GI  +Q   + G  + + +   +  A++G   +L    
Sbjct: 177 NYIEDVAAEVDFNVVMNDEMGIIEVQGTAESGAYTRHQLNQLIDLAEKGIKELLEAQR 234



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 80/227 (35%), Gaps = 30/227 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+  E     R + G+VLA  GET VL TV     +            LT  Y+     
Sbjct: 15  RPILFER-EFTRYAPGSVLAHCGETKVLCTVTVQEEV-PRFLKDTGSGWLTAEYRMLP-- 70

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPH 127
            G  P    R   + +     I R+I RS+R     K     T  V  +V+Q D      
Sbjct: 71  -GATPERQRRELLKLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVIQADAG--TR 127

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+     AL           +L   P    V    V  + G+  L+    ED   +  
Sbjct: 128 TTSITGGYVALVDAVDKLVKTGVLERSPLIHQVAAVSVGLLEGEPFLDLNYIEDVAAEVD 187

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
            ++ ++  +  ++ V+   E+   +   +   I       K ++EA 
Sbjct: 188 FNVVMN-DEMGIIEVQGTAESGAYTRHQLNQLIDLAEKGIKELLEAQ 233


>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
          Length = 252

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 8/237 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R I A+VG+  +  GS+   +G+T+ +  V  G  E  +   
Sbjct: 7   EFVSPEGLRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATV-YGPHEVSRKNK 65

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L    R      Y     AT E  +     +R +      R A    +         + 
Sbjct: 66  PLH--DRAIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ +SDG +    +  ++LALMDAG+ +   V   ++G + D      L DI+  ED
Sbjct: 124 IFLQVLQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTP----LLDINYIED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
             G  D  VA        + ++M    +  +     L+ A  G   I + +   + E
Sbjct: 180 SAGGPDLTVAVLARSRKTVLVEMD-SRLHIDRFDDVLRLAIDGCQAIHSILDSAMVE 235



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 17/198 (8%)

Query: 26  QSDGAVLATYGETVVLATVVY----DRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           Q+DG+     G T +LATV       R  K   D   +   Y+  ++A  +      ++ 
Sbjct: 36  QADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAIINCEYRVASFATAE-----RKKP 90

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            R  +  + ++  +  +           +++  + + V+Q D  +    V + AA+ ALM
Sbjct: 91  VRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGGN--RAVCINAATLALM 148

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLS 196
            +G+  +  V    V  I+   +L+    ED      L + V       ++VE+++  L 
Sbjct: 149 DAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTVAVLARSRKTVLVEMDSR-LH 207

Query: 197 EDVVLDAIIFGHNECKPV 214
            D   D +    + C+ +
Sbjct: 208 IDRFDDVLRLAIDGCQAI 225


>gi|124267890|ref|YP_001021894.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
 gi|124260665|gb|ABM95659.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
          Length = 241

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R ++ +R ++      +   GS L   GDT+ +   ++    +E+      G+   
Sbjct: 5   RTQARAADALRPLTITRRYTKHAEGSVLIAFGDTKVLCTASV----EEKVPPHKRGSGEG 60

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V    A    ++ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D              PI +PVA +++G+V+       L 
Sbjct: 121 VLQADGGTRTAAITGAYVAAHDAVTWLLAQGKIGASPIREPVAAVSVGIVQGTP----LL 176

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    S   M   L  A++G   ++   +
Sbjct: 177 DLEYIEDSACDTDMNVVMTGAGHFIEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQA 236

Query: 537 KVLSE 541
             L +
Sbjct: 237 AALKD 241



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 24/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RPL + T R  + ++G+VL  +G+T VL T   +  +     G     +T  Y     + 
Sbjct: 15  RPLTI-TRRYTKHAEGSVLIAFGDTKVLCTASVEEKVPPHKRGSGEGWVTAEYGMLPRST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +F      E    +  +V+Q D       
Sbjct: 74  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  A  A             +   P   PV    V  + G  +L+    ED      +
Sbjct: 131 AAITGAYVAAHDAVTWLLAQGKIGASPIREPVAAVSVGIVQGTPLLDLEYIEDSACDTDM 190

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++G    + +    E    S   +   +       + ++ A +   K 
Sbjct: 191 NVVMTGAGHFIEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQAAALKD 241


>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
 gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
          Length = 243

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 97/235 (41%), Gaps = 12/235 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE--DEQY 362
            ++  + +R+DGR  E +R  + ++G+L R  GS+   +G+T+A+  +  G  +  D+  
Sbjct: 2   EIISPEGLRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASIN-GPHQAGDKAK 60

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +       R      Y+    +T E        +R I   +L R      +         
Sbjct: 61  IKH----DRVHINFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAILTDLYPKSQ 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  +I ++DG +  A +  ++LALMDAGVP+   +      LV   D   I+   + +
Sbjct: 117 IDIHVQILQADGGNYSACINAATLALMDAGVPMKDFICSCTASLV---DSKTIIDVNNSE 173

Query: 483 EDHLGHM--DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           E H  +      +  T   I   QM  ++       ++ A  +  +    I++  
Sbjct: 174 ELHFSNPLLTLAILPTSEEIILCQMKSRLHADHLEDILKAGIKGCKDIYEIMHRE 228



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 88/206 (42%), Gaps = 11/206 (5%)

Query: 21  GRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           G ++R +DG+     G T  LA++       D        V+   + Y++        R 
Sbjct: 27  GVLSR-ADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRVHINFQ-YSMATFSTNERRN 84

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV--MQHDLESSPHVVSMVAASAAL 138
             +  +  I IS+++    +         ++Q+ I+V  +Q D  +      + AA+ AL
Sbjct: 85  RPKGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQILQADGGNYS--ACINAATLAL 142

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGS---LDLFVSGTQDAVLMVELEANQ 194
           M +G+P +  +       ++ + +++    +E   S   L L +  T + +++ ++++  
Sbjct: 143 MDAGVPMKDFICSCTASLVDSKTIIDVNNSEELHFSNPLLTLAILPTSEEIILCQMKSR- 201

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISK 220
           L  D + D +  G   CK + E + +
Sbjct: 202 LHADHLEDILKAGIKGCKDIYEIMHR 227


>gi|158335996|ref|YP_001517170.1| ribonuclease PH [Acaryochloris marina MBIC11017]
 gi|189043752|sp|B0CAB9|RNPH_ACAM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158306237|gb|ABW27854.1| ribonuclease PH [Acaryochloris marina MBIC11017]
          Length = 239

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I           GS L   G T+ +  V++           L  T + 
Sbjct: 5   RPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPG----VPRFLEDTGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T E  R      S R     RL  R++   L   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPGSTPERQRRELMKLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL+DA             PI   VA +++GL+    +     D+
Sbjct: 121 QADAGTRTTSITGGFVALVDAVNQLVSKGEIPQSPIRHHVAAVSVGLL----EGQPFLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +D  V  T+   +  +Q   + G +    +   L  A+ G   ++    + 
Sbjct: 177 NYPEDVGAAVDLNVVATEQLELLEVQGTAEEGTLPRPQLNQMLDLAEIGIQQLIEAQRQA 236



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 87/234 (37%), Gaps = 34/234 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP++         + G+VLA  G+T VL TV    S++ G   F        LT  Y+  
Sbjct: 15  RPIRF-HREYTHFAAGSVLAECGQTKVLCTV----SVQPGVPRFLEDTGQGWLTAEYRML 69

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLES 124
               G  P    R   + +     I R+I RS+R     +     T V+  +V+Q D   
Sbjct: 70  P---GSTPERQRRELMKLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQADAG- 125

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG- 172
                S+     AL+           +   P    V    V  + GQ  L+    ED G 
Sbjct: 126 -TRTTSITGGFVALVDAVNQLVSKGEIPQSPIRHHVAAVSVGLLEGQPFLDLNYPEDVGA 184

Query: 173 SLDLFVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++DL V  T+   +L V+  A +  L    +   +       + +IEA  +   
Sbjct: 185 AVDLNVVATEQLELLEVQGTAEEGTLPRPQLNQMLDLAEIGIQQLIEAQRQALA 238


>gi|167644139|ref|YP_001681802.1| ribonuclease PH [Caulobacter sp. K31]
 gi|189043756|sp|B0T369|RNPH_CAUSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167346569|gb|ABZ69304.1| ribonuclease PH [Caulobacter sp. K31]
          Length = 242

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 24/249 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+ +   GS L   G T+ +V  T+    +E     +     
Sbjct: 1   MRPSERAPDVLRVVTLETGVNRYAEGSCLISFGHTKVLVTATV----EENVPGWMRNKGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGRREAALGKQSGRTQEIQRLIGRSLRAVVDLKALGERQISLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A       L++ GV    PI   VA ++ G+ KD      +
Sbjct: 117 DVLQADGGTRTAAITGAWVALRIAVNYLLEEGVLKTDPIVGQVAAVSCGVFKDTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D     T+ G I  +Q   +  G +          A++G   +  + 
Sbjct: 173 LDLDYEEDSQAEADSNFVLTNVGDIVEIQATGEKRGFTRGEFEQLFALAEKGIGELFVKQ 232

Query: 536 SKVLSESRL 544
            + +S ++ 
Sbjct: 233 LEAVSAAKP 241



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + LETG + R ++G+ L ++G T VL T   + ++      +    +T  Y     A 
Sbjct: 12  RVVTLETG-VNRYAEGSCLISFGHTKVLVTATVEENVPGWMRNKGAGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  ----HTRGRREAALGKQSGRTQEIQRLIGRSLRAVVDLKALGERQISLDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL ++       G+    P  G V            VL+   +ED   +
Sbjct: 125 TRTAAITGAWVALRIAVNYLLEEGVLKTDPIVGQVAAVSCGVFKDTPVLDLDYEEDSQAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
              +  ++   D ++ ++    
Sbjct: 185 ADSNFVLTNVGD-IVEIQATGE 205


>gi|317129838|ref|YP_004096120.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
 gi|315474786|gb|ADU31389.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
          Length = 255

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 103/251 (41%), Gaps = 23/251 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R +      ++   GS L   G+T+ I   ++    +++    + G  +
Sbjct: 1   MRHDGRKTDDIRKVDIIPHYIKHPEGSVLISFGETKVICAASI----EDRVPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT + +      G  S R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWITAEYSMLPRATEQRNIRESAKGKLSGRTMEIQRLIGRALRSVVDLDAIGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A+V G+ +A+                PI   +A I++G V +G+  I +
Sbjct: 117 DVIQADGGTRTASVTGAFVAMALALHKLKEAKQIKKFPIKHFLAAISVG-VNEGN--IAI 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   ++D  +  T +     +Q   +    S   +   L  A+ G   +    
Sbjct: 174 LDLDYIEDSKANVDMNIIMTGNSEFVEIQGTGEEATFSRKQLNEMLDLAELGINELFLHQ 233

Query: 536 SKVLSESRLQL 546
            + L      +
Sbjct: 234 KEALGPISDYI 244



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 25/205 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL ++GET V+     +  +     GQ    +T  Y     A  +        + + +
Sbjct: 26  GSVLISFGETKVICAASIEDRVPPFMRGQGKGWITAEYSMLPRAT-EQRNIRESAKGKLS 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
              + I R+I R++R +       E    +  +V+Q D  +    V+    + AL L  L
Sbjct: 85  GRTMEIQRLIGRALRSVVDLDAIGERTIWIDCDVIQADGGTRTASVTGAFVAMALALHKL 144

Query: 144 ---------PFEGPVVGAQVDYINGQY-VLNPRLDEDQG---SLDLFVSGTQDAVLMVEL 190
                    P +  +    V    G   +L+    ED      +++ ++G  + V  ++ 
Sbjct: 145 KEAKQIKKFPIKHFLAAISVGVNEGNIAILDLDYIEDSKANVDMNIIMTGNSEFV-EIQG 203

Query: 191 EANQLS-----EDVVLDAIIFGHNE 210
              + +      + +LD    G NE
Sbjct: 204 TGEEATFSRKQLNEMLDLAELGINE 228


>gi|187931269|ref|YP_001891253.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
 gi|226736911|sp|B2SF43|RNPH_FRATM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187712178|gb|ACD30475.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 235

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++              +  
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASV----VAGVPKFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  TA    T++I  
Sbjct: 57  GWLTAEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V    + GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     LT  Y     +          R 
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLTAEYGMLPRSTHMRMDREAAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  ++  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKIDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +               P    V    V   N + VL+   DED   +  +++ ++ +  
Sbjct: 139 DAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SNG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S]
 gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
 gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S]
 gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
          Length = 260

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R++    G      GS L   G+T+ +   ++    +E       G+   
Sbjct: 4   REDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASV----EEGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    T+ I  +
Sbjct: 60  WLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL+DA              PIS  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCAIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A  G   +    
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFAIQ 235

Query: 536 SKVLSESRL 544
              L+E   
Sbjct: 236 QAALAEPYP 244



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 34/240 (14%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+ T   +  +   + G     LT  Y     A      G    + +  
Sbjct: 28  GSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTAEYAMLPAAT-HTRSGRESVKGKVG 86

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR++ RS+R          N   +  +V+Q D        ++  A  AL+ +  
Sbjct: 87  GRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQADGG--TRTAAITGAYVALVDAVT 144

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVEL 190
                       P    +    V  ++G+  L+ P  ++ +  +D+ V  T    L+   
Sbjct: 145 YLRAAGRLADPQPISCAIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDTGTLVEIQ 204

Query: 191 EANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEM 244
              +       + D +LD+ + G        E +  + +    EP      + ++ +++ 
Sbjct: 205 GTGEGATFPRSTLDKLLDSALAG-------CEQLFAIQQAALAEPYPGVLPEATEPKKKA 257


>gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
 gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
          Length = 277

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 16/235 (6%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++RDI      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 43  GRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKEQGWVT 98

Query: 376 MHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ +
Sbjct: 99  AEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 158

Query: 432 SDGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +DG +  A++ G+ +A       L+  G+    P+      +       + L D+   ED
Sbjct: 159 ADGGTRTASITGAYVALQIAVDKLLSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPED 218

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  +  T SG I  +Q   +    S   +   +  A +G   ++      
Sbjct: 219 SGCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAA 273



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           +DG+ L   G T V+ T   D ++     G++   +T  Y     +        +RRE  
Sbjct: 62  ADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYGMLPASTA----SRMRREAA 117

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             + +     I R+I RS+R +       E Q++   +V+Q D        S+  A  AL
Sbjct: 118 AGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG--TRTASITGAYVAL 175

Query: 139 MLS-------GLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGTQDA 184
            ++       GL  E P+  A      G     P LD D          +++ ++ +   
Sbjct: 176 QIAVDKLLSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGCDSDVNIIMTAS-GK 234

Query: 185 VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++  A     S + +   I   H     +++   
Sbjct: 235 IIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 271


>gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262]
 gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262]
          Length = 248

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  V     P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            + L +
Sbjct: 234 KETLGD 239



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSETELAELIALGKKGISELIEIQKE 235


>gi|331007601|ref|ZP_08330748.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
 gi|330418594|gb|EGG93113.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
          Length = 239

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR  +  R I       +   GS L   G+T+ I   ++    +      L G  +
Sbjct: 2   HRPSGRTPDQTRPIRLTKNFTKHAEGSVLIEFGETKVICTASI----ENSVPGFLRGQGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  + R +   RL  R++   +        T+ I  
Sbjct: 58  GWITAEYGMLPRSTHSRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+++ +A I++G+ +       +
Sbjct: 118 DVIQADGGTRTASITGACVALADALNKLLANGTLKQNPLTRMIASISVGIYQGE----AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +   D  G+  +Q   +    SE   +  L  AK+G   +    
Sbjct: 174 LDLDYPEDSSADTDMNIVMADDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKGIKELNAAQ 233

Query: 536 SKVLSE 541
              L+E
Sbjct: 234 LACLAE 239



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 26/226 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP++L T    + ++G+VL  +GET V+ T   + S+     GQ    +T  Y     + 
Sbjct: 13  RPIRL-TKNFTKHAEGSVLIEFGETKVICTASIENSVPGFLRGQGKGWITAEYGMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + T   + I R+I RS+R         E    +  +V+Q D       
Sbjct: 72  -HSRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITIDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL            L   P    +    V    G+ VL+    ED      +
Sbjct: 129 ASITGACVALADALNKLLANGTLKQNPLTRMIASISVGIYQGEAVLDLDYPEDSSADTDM 188

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++ ++     ++ V+   E    SE   +  +       K +  A 
Sbjct: 189 NIVMA-DDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKGIKELNAAQ 233


>gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1]
 gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1]
          Length = 260

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 22/237 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R I+ +  +     GS L   G T+ I    +  +          G +
Sbjct: 15  SPRSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQ--QGVR 72

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y+ LP +T +        G    R +   RL  R++  V+        TL I 
Sbjct: 73  GGWLTAEYSMLPYSTLDRKPRDISKGKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWID 132

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ LA       L+DAG     P+   VA ++ G+    +    
Sbjct: 133 CDVLQADGGTRTASITGAYLATRLAVQRLVDAGKLAENPVLDSVAAVSAGVCGGQE---- 188

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           L D++  ED    +D  +  T  G    MQ   +    +   ++     A++G   I
Sbjct: 189 LLDLNYVEDKDAEVDANIVMTGRGQFVEMQSSGEEATFTHEQLLSLTALAQKGLKEI 245



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 30/236 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL-----KDGQDFFPLTVNYQERTY 68
           RP+  E   IA  + G+VL ++G T V+   + +  +     + G     LT  Y    Y
Sbjct: 27  RPITFEAN-IAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQQGVRGGWLTAEYSMLPY 85

Query: 69  AV-GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
           +   + P    +   +     + I R+I RS+R +    K  +N   +  +V+Q D    
Sbjct: 86  STLDRKPRDISK--GKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWIDCDVLQADGG-- 141

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  A             L+  P    V         GQ +L+    ED   +
Sbjct: 142 TRTASITGAYLATRLAVQRLVDAGKLAENPVLDSVAAVSAGVCGGQELLDLNYVEDKDAE 201

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
              ++ ++G    V  ++    +   + + +L          K +    +     C
Sbjct: 202 VDANIVMTGRGQFV-EMQSSGEEATFTHEQLLSLTALAQKGLKEIAALQTAFLTKC 256


>gi|16124407|ref|NP_418971.1| ribonuclease PH [Caulobacter crescentus CB15]
 gi|221233090|ref|YP_002515526.1| ribonuclease PH [Caulobacter crescentus NA1000]
 gi|239977592|sp|B8GXP2|RNPH_CAUCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239977593|sp|P0CAW5|RNPH_CAUCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|13421265|gb|AAK22139.1| ribonuclease PH [Caulobacter crescentus CB15]
 gi|220962262|gb|ACL93618.1| ribonuclease PH [Caulobacter crescentus NA1000]
          Length = 238

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+ +   GS L   G T+ +V  T+    +E     +     
Sbjct: 1   MRPSERAPDQLRAVTLETGVNRYAEGSCLIGFGHTKVLVTATV----EENVPGWMRNKGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  + R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A       L+D GV    PI   VA ++ G+     + + +
Sbjct: 117 DVVQADGGTRTAAITGAWVALRLATKYLLDEGVLKTDPILGQVAAVSCGVF----NGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D     T  G I  +Q   +  G +          A++G   +    
Sbjct: 173 LDLDYEEDSNAEADSNFVLTGVGDIVEIQATGEKRGFTRAEFESLYGLAEKGINELFALQ 232

Query: 536 SKV 538
              
Sbjct: 233 RAA 235



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + LETG + R ++G+ L  +G T VL T   + ++      +    +T  Y     A 
Sbjct: 12  RAVTLETG-VNRYAEGSCLIGFGHTKVLVTATVEENVPGWMRNKGAGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + T     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  ----HTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQADGG-- 124

Query: 126 PHVVSMVAASAALMLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL L+             P  G V        NG  VL+   +ED   +
Sbjct: 125 TRTAAITGAWVALRLATKYLLDEGVLKTDPILGQVAAVSCGVFNGVPVLDLDYEEDSNAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
              +  ++G  D ++ ++    
Sbjct: 185 ADSNFVLTGVGD-IVEIQATGE 205


>gi|269120934|ref|YP_003309111.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
 gi|268614812|gb|ACZ09180.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
          Length = 232

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 24/239 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R+I      +    GS L   G+T+ I   T+    +E+    L G+  
Sbjct: 1   MRNNNRKNDELREIKITKNFIMHPEGSVLIEFGNTKVICNATV----EEKVPPFLKGSGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ +P AT   ++     G P+ R +   RL  R++   +        T+ +  
Sbjct: 57  GWVTAEYSMIPRATNVRTQREVNKGKPTGRTMEIQRLIGRSLRSAVDLKKLGERTIIVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  LAL           + +  P+   VA I++G VK      IL
Sbjct: 117 DVIQADGGTRTASITGGYLALETAVEQLINSGLLSQNPVIAKVAAISVGKVKGE----IL 172

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
            D+   ED L  +D  +     +    +Q   +    S + ++  ++ AK+G   +   
Sbjct: 173 LDLEYSEDSLAEVDMNIVMNSKNEFIEIQGTGEEATFSYDELIKFIEAAKKGFEKLFEI 231



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 25/209 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+     +  +     G     +T  Y     A        + +  +PT
Sbjct: 26  GSVLIEFGNTKVICNATVEEKVPPFLKGSGSGWVTAEYSMIPRATNVRTQREVNK-GKPT 84

Query: 86  ENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHVVSMVAASAAL----- 138
              + I R+I RS+R     K     T ++  +V+Q D        S+     AL     
Sbjct: 85  GRTMEIQRLIGRSLRSAVDLKKLGERTIIVDCDVIQADGG--TRTASITGGYLALETAVE 142

Query: 139 ------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                 +LS  P    V    V  + G+ +L+    ED   +  +++ ++ +++  + ++
Sbjct: 143 QLINSGLLSQNPVIAKVAAISVGKVKGEILLDLEYSEDSLAEVDMNIVMN-SKNEFIEIQ 201

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIE 216
               + +   D ++  I       + + E
Sbjct: 202 GTGEEATFSYDELIKFIEAAKKGFEKLFE 230


>gi|319943444|ref|ZP_08017726.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743259|gb|EFV95664.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 253

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 21/246 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +  Q    +   GS L   GDT+ +   ++     +     L G  + 
Sbjct: 9   RHDGRALDGLRPVRFQRRFTRHAEGSVLVSFGDTRVLCTASV----LDSVPPFLRGKGQG 64

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++  V         T+ +  +
Sbjct: 65  WVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIHLDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVK-DGDDFIIL 476
           + ++DG +  A + G+ +AL D              P+ + VA I++G+V   G     +
Sbjct: 125 VLQADGGTRTAAITGAWVALRDAVNGLLAAGKLTSDPLREAVAAISVGIVALPGAAPACV 184

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T S G+  +Q   +    S       L  A +G   ++   
Sbjct: 185 LDLDYQEDSGCETDMNVVMTASGGLVEIQGTAEGAPFSRQQASELLDLAAKGIDELVRLQ 244

Query: 536 SKVLSE 541
              L E
Sbjct: 245 RAALQE 250



 Score = 60.3 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 27/237 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP++ +  R  R ++G+VL ++G+T VL T     S+     G+    +T  Y     A 
Sbjct: 19  RPVRFQR-RFTRHAEGSVLVSFGDTRVLCTASVLDSVPPFLRGKGQGWVTAEYGMLPRAT 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +       E    +  +V+Q D  +    
Sbjct: 78  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIHLDCDVLQADGGTRTAA 136

Query: 129 V---------SMVAASAALMLSGLPFEGPVVGAQVDYI--NG---QYVLNPRLDED---Q 171
           +         ++    AA  L+  P    V    V  +   G     VL+    ED   +
Sbjct: 137 ITGAWVALRDAVNGLLAAGKLTSDPLREAVAAISVGIVALPGAAPACVLDLDYQEDSGCE 196

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             +++ ++ +   ++ ++  A     S     + +         ++       +   
Sbjct: 197 TDMNVVMTAS-GGLVEIQGTAEGAPFSRQQASELLDLAAKGIDELVRLQRAALQEEG 252


>gi|269123373|ref|YP_003305950.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
 gi|268314699|gb|ACZ01073.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
          Length = 231

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 24/229 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R+I      ++   GS L   G+T+ I  VT+    +E+    L    +
Sbjct: 1   MRTNNRKNNELREIKITREYIKYPEGSVLIEFGNTKVICNVTV----EEKVPPFLKNLGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   ++     G  S R +   RL  R++   L        TL +  
Sbjct: 57  GWVTAEYSMLPRATNTRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  LA+           +    PI   VA I++G V +     + 
Sbjct: 117 DVIQADGGTRTASITGGYLAMEIAINKLILSGLLNENPIRAKVAAISVGKVNNE----LF 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQA 524
            D+   ED    +D  +     G    +Q   +    ++  +   ++ A
Sbjct: 173 LDLEFYEDSHADVDMNIVMNSKGEFIEIQGTGEDTTFTKQELDKFIELA 221



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 37/234 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R +K+ T    +  +G+VL  +G T V+  V  +  +           +T  Y     A 
Sbjct: 12  REIKI-TREYIKYPEGSVLIEFGNTKVICNVTVEEKVPPFLKNLGQGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESS 125
                   +RE    + +   + I R+I RS+R     K     T ++  +V+Q D  + 
Sbjct: 71  N----TRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDCDVIQADGGTR 126

Query: 126 PHV-----VSMVAASAALMLSGL----PFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLD 175
                   ++M  A   L+LSGL    P    V    V  +N +  L+    ++    +D
Sbjct: 127 TASITGGYLAMEIAINKLILSGLLNENPIRAKVAAISVGKVNNELFLDLEFYEDSHADVD 186

Query: 176 L-FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKM 224
           +  V  ++   + ++      +         F   E    IE       KL K+
Sbjct: 187 MNIVMNSKGEFIEIQGTGEDTT---------FTKQELDKFIELASLGFEKLFKL 231


>gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 248

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+   +R I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++               P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEQVPFTKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            ++L +
Sbjct: 234 KEILGD 239



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 80/215 (37%), Gaps = 26/215 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEQVPFTKFPVKDFLAATSVGVLEEGGTVLDLNYIEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           +    + +  E  + + I  G      +IE   ++
Sbjct: 202 QGTGEEATFSETELAELIALGKKGISELIEIQKEI 236


>gi|325068398|ref|ZP_08127071.1| ribonuclease PH [Actinomyces oris K20]
          Length = 268

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 92/253 (36%), Gaps = 28/253 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ +   +      E       G+   
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFT----EGVPRWRKGSGEG 63

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E S      G    R     RL  R++  ++   A    T+ +  +
Sbjct: 64  WVTAEYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMDA--------------GVP-ISKPVAGIAMGLVKDGDDF 473
           + ++DG +  A + G+ +AL DA              G P +S  ++ I++G++    D 
Sbjct: 124 VLQADGGTRTAAITGAYVALADAVAWGTQRGLIKARPGRPVLSDSLSAISVGII----DG 179

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +   D+  +ED     D  V  T  G    +Q   +      + +   L  A  G   + 
Sbjct: 180 VPCLDLPYEEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLA 239

Query: 533 NEMSKVLSESRLQ 545
               + L+    +
Sbjct: 240 ALQRQALAGPSGE 252



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 29/235 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL T+G T VL    +   +   + G     +T  Y     A  +  G    R  +
Sbjct: 30  AEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTAEYAMLPRAGSERSGRESVR-GK 88

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
                  ISR+I RS+R +       E  +    +V+Q D        ++  A  AL  +
Sbjct: 89  VGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQADGG--TRTAAITGAYVALADA 146

Query: 142 --------------GLP-FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
                         G P     +    V  I+G   L+   +ED   Q  +++  +G   
Sbjct: 147 VAWGTQRGLIKARPGRPVLSDSLSAISVGIIDGVPCLDLPYEEDVRAQTDMNVVQTG-DG 205

Query: 184 AVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
             + V+  A     D   + + +         +     +     + EP  + S D
Sbjct: 206 RFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALAGPSGEPFTVSSAD 260


>gi|302336447|ref|YP_003801654.1| RNAse PH [Olsenella uli DSM 7084]
 gi|301320287|gb|ADK68774.1| RNAse PH [Olsenella uli DSM 7084]
          Length = 267

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 22/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R       +++   GS L   GDT+ I   T+    +E       G++  
Sbjct: 31  RSYGRAADQMRPAKLTRDIMKNADGSCLAEFGDTRVICTATV----EEGVPAWRKGSRAG 86

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T   SR        R +   RL  R++  V+        T+    ++ 
Sbjct: 87  WVSAEYAMLPASTSTRSRREYKGRKGRSMEIERLIGRSLRAVVDLHRLGELTVICDCDVI 146

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL D           A +P++  VA I+MG+V    D  +L D+
Sbjct: 147 QADGGTRTASITGAWVALHDALMASVDAGRLARLPLTGQVAAISMGMV----DGSLLLDL 202

Query: 480 SGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  + GTD  GI  +Q   +   I    +   L   + G   ++   ++V
Sbjct: 203 DYPEDSHAQVDMNLVGTDAGGIVEVQGTGERSTIDRAQLNALLDLGQVGIGRLVALQNQV 262

Query: 539 L 539
            
Sbjct: 263 T 263



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 28/229 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP KL T  I + +DG+ LA +G+T V+ T   +  +   + G     ++  Y     + 
Sbjct: 41  RPAKL-TRDIMKNADGSCLAEFGDTRVICTATVEEGVPAWRKGSRAGWVSAEYAMLPAST 99

Query: 71  G-KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             +    Y  R+ R     + I R+I RS+R +       E  VI   +V+Q D      
Sbjct: 100 STRSRREYKGRKGR----SMEIERLIGRSLRAVVDLHRLGELTVICDCDVIQADGG--TR 153

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLD 175
             S+  A  AL            L+ LP  G V    +  ++G  +L+    ++    +D
Sbjct: 154 TASITGAWVALHDALMASVDAGRLARLPLTGQVAAISMGMVDGSLLLDLDYPEDSHAQVD 213

Query: 176 LFVSGTQ-DAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKL 221
           + + GT    ++ V+    + + D   +   +  G      ++   +++
Sbjct: 214 MNLVGTDAGGIVEVQGTGERSTIDRAQLNALLDLGQVGIGRLVALQNQV 262


>gi|298369114|ref|ZP_06980432.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283117|gb|EFI24604.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 246

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++RDI      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 8   GRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASV----DENVPPFLRGKEQGWVT 63

Query: 376 MHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ +
Sbjct: 64  AEYGMLPASTATRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 432 SDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +AL           +    PI +        +       + L D+ 
Sbjct: 124 ADGGTRTASITGAFVALQIAVEKLLSDGLIGENPIRE----AVAAVSAGVVGGVPLLDLD 179

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             ED     D  +  T SG I  +Q   +    S + +   +  A++G   ++      L
Sbjct: 180 YPEDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELVRHQQNAL 239

Query: 540 SESRL 544
             SR 
Sbjct: 240 QTSRP 244



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHADGSCLIECGNTKVICTASVDENVPPFLRGKEQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----TRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALMLS-------GLPFEGPVVGAQVDYINGQYVLNPRLDED-------Q 171
               S+  A  AL ++       GL  E P+  A      G     P LD D        
Sbjct: 128 TRTASITGAFVALQIAVEKLLSDGLIGENPIREAVAAVSAGVVGGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D +   I         ++    
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELVRHQQ 236


>gi|260494952|ref|ZP_05815081.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
 gi|260197395|gb|EEW94913.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
          Length = 434

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 111/309 (35%), Gaps = 30/309 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+    R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASV----SDKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +   A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +AL                P+   VA I++G V       ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISNVAAISVGKVNSE----LMV 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G    +Q   +    +   +   L  A+     ++    
Sbjct: 175 DLKYSEDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVKI 595
           +++++    L  F        I      + I  G + I  +  + G ++  + +DG    
Sbjct: 235 EIINQ--ENLKIFLATANKHKIDE---ISDIFSGIENIEILSIKDGIEIPEVIEDGKTFE 289

Query: 596 ASSSLAEIE 604
            +S    +E
Sbjct: 290 DNSKKKAVE 298



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 28/261 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +     G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  +N + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLKEEILEENPLISNVAAISVGKVNSELMVDLKYSEDSAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---------KMCAKEPIVIDSKDFSK 239
              +   +   +   +    N  K +I+   ++              K  I   S  FS 
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQENLKIFLATANKHKIDEISDIFSG 263

Query: 240 LEEEMSQMIKEDLRVSCFIPE 260
           +E      IK+ + +   I +
Sbjct: 264 IENIEILSIKDGIEIPEVIED 284


>gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
 gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
          Length = 261

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R +    G      GS L   G T+     ++     E       GT   
Sbjct: 4   RLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASVT----EGVPRWRKGTGEG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G    R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              PIS  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAITGAFVALSDAVTWLAASGRLADPQPISCGIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +        +   L  A  G   ++   
Sbjct: 176 LDLPYEEDARAEVDMNVVATDTGALVEVQGTAEGATFHRKTLDKLLDLAFSGIERLVAAQ 235

Query: 536 SKVLSESRL 544
            + L+    
Sbjct: 236 QEALALPYP 244



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 24/217 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G+T V         +   + G     LT  Y     A           + +  
Sbjct: 28  GSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTAEYAMLPAATA-TRNDRESVKGKLG 86

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR+I RS+R          N   V  +V+Q D        ++  A  AL  +  
Sbjct: 87  GRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQADGG--TRTAAITGAFVALSDAVT 144

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQ-DAVLMVE 189
                       P    +    V  ++G+  L+ P  ++ +  +D+ V  T   A++ V+
Sbjct: 145 WLAASGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEEDARAEVDMNVVATDTGALVEVQ 204

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
             A   +     +   +    +  + ++ A  +   +
Sbjct: 205 GTAEGATFHRKTLDKLLDLAFSGIERLVAAQQEALAL 241


>gi|254670670|emb|CBA06757.1| ribonuclease PH [Neisseria meningitidis alpha153]
 gi|261392252|emb|CAX49772.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis 8013]
 gi|325204479|gb|ADY99932.1| ribonuclease PH [Neisseria meningitidis M01-240355]
          Length = 242

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 16/238 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L    GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
               D  +  T SG I  +Q   +    S + +   +  A++G   +L      LS +
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALSAA 242



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL +           S  P    V    V  +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D +   +         +++   
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQ 236


>gi|300113393|ref|YP_003759968.1| ribonuclease PH [Nitrosococcus watsonii C-113]
 gi|299539330|gb|ADJ27647.1| ribonuclease PH [Nitrosococcus watsonii C-113]
          Length = 239

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I       Q   GS L   G+T+ I   ++    +++    L GT R
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTQYAEGSVLVEFGNTRVICNASV----EDRIPRFLKGTGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL+D           A  PI   +A +++G+     +   +
Sbjct: 117 DVIQADGGTRTAAITGSYVALVDAIHNRLKKRAIAHSPIHGQIASVSVGIY----EGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   ++G    +Q   +      N +   L+ AK G   +L + 
Sbjct: 173 LDLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 TEV 235



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+   T    + ++G+VL  +G T V+    V DR  +   G     +T  Y     + 
Sbjct: 12  RPIHF-TRHYTQYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G    + R     + I R+I R++R +       E  V    +V+Q D       
Sbjct: 71  -HNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  +  AL            ++  P  G +    V    G  VL+    ED   +  +
Sbjct: 128 AAITGSYVALVDAIHNRLKKRAIAHSPIHGQIASVSVGIYEGTPVLDLDYREDSTAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++    A + ++   E +    + +   +    N    ++   +++  
Sbjct: 188 NVVMN-EAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQTEVLA 237


>gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064]
 gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
 gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
          Length = 248

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+      +D  V     P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIVLGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            + L +
Sbjct: 234 KETLGD 239



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I+ G      +IE   +
Sbjct: 202 QGTGEEATFSETELAELIVLGKKGISELIEIQKE 235


>gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478]
          Length = 259

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 25/258 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R +    G  +   GS L   G T+ +   ++     E       G+ 
Sbjct: 2   SKREDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASVT----EGVPRWRKGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G    R     RL  R++   +   A    T+ + 
Sbjct: 58  VGWLTAEYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVD 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              P+S  +A I++G+V    D  
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAISVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I  D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A      +  
Sbjct: 174 IRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFA 233

Query: 534 EMSKVLSESRLQLGEFTP 551
              + L+     +    P
Sbjct: 234 AQREALALPYPGVLPEGP 251



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 25/232 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G       G+VL  +G T VL T      +   + G     LT  Y     A 
Sbjct: 14  RPVVITRG-FTENPAGSVLIEFGRTKVLCTASVTEGVPRWRKGSGVGWLTAEYAMLPSAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                     + R       ISR++ RS+R          N   V  +V+Q D       
Sbjct: 73  -HTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAYVALADAVTYLAAAGKLSDPRPLSCAIAAISVGVVDGRIRVDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T    L+      +        +   +      C  +  A  +   +
Sbjct: 190 MNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFAAQREALAL 241


>gi|114798422|ref|YP_761988.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
 gi|114738596|gb|ABI76721.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
          Length = 241

 Score =  148 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR  GR  + +R IS +  + +   GS L   G T  +   +     ++     L G   
Sbjct: 5   VRPTGRAFDELRPISLETSVTRYAEGSCLAKFGHTHVLCTAS----WEKGVPGWLKGKGE 60

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  S R     RL  R++  V+   A    T+ I  
Sbjct: 61  GWVTGEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRSVVDLKALGENTITIDC 120

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL                PI K  A I++GL ++      +
Sbjct: 121 DVIQADGGTRTASITGGFVALAMACRYLQTEGVIKASPIQKQAAAISVGLFQNHP----V 176

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED  G  D  V  +   G   +Q   +   +S   +   ++ A++G   +    
Sbjct: 177 LDVDYPEDSEGEADMNVVMSSDGGFIEVQGTGESRPMSRTELDEMMRLAEKGCNELFAAQ 236

Query: 536 SKV 538
              
Sbjct: 237 RAA 239



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ LET  + R ++G+ LA +G T VL T  +++ +     G+    +T  Y     A 
Sbjct: 16  RPISLET-SVTRYAEGSCLAKFGHTHVLCTASWEKGVPGWLKGKGEGWVTGEYGMLPRAT 74

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESS 125
                   RRE    + +     I R+I RS+R +   K    N   +  +V+Q D    
Sbjct: 75  ----HTRGRREAAAGKQSGRTQEIQRLIGRSLRSVVDLKALGENTITIDCDVIQADGG-- 128

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQ 171
               S+     AL ++             P +       V       VL+   P   E +
Sbjct: 129 TRTASITGGFVALAMACRYLQTEGVIKASPIQKQAAAISVGLFQNHPVLDVDYPEDSEGE 188

Query: 172 GSLDLFVSGTQDAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAI 218
             +++ +S +    + V+   E+  +S   + + +      C  +  A 
Sbjct: 189 ADMNVVMS-SDGGFIEVQGTGESRPMSRTELDEMMRLAEKGCNELFAAQ 236


>gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
 gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
          Length = 240

 Score =  148 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +      ++   GS L   GDT+ I   ++    +E+       +   
Sbjct: 3   RHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASV----EERIPPFKKDSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS----RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   ++          R     RL  R++  ++        T+ +  +
Sbjct: 59  WITAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G  +AL DA             PI   VA  ++G+V   +    L 
Sbjct: 119 VIQADGGTRTASITGGYVALADACRTLVKNGLISKTPIIGIVAATSVGIVNGEE----LL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  TD G    +Q   +    S+  +   L  A+ G   ++   +
Sbjct: 175 DLCYIEDSNAEVDMNVIMTDKGEFIELQATGEKSSFSKKQLDKLLNLAESGIHELIKAQN 234

Query: 537 KV 538
           +V
Sbjct: 235 EV 236



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 29/220 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTYAV-GKIPGGYL 78
           + ++G+VL   G+T V+ T   +  +       G+ +     +   R  AV  +     L
Sbjct: 23  KHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWITAEYSMLPRATAVRNQRDISKL 82

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASA 136
           +   R +E    I R+I RS+R +       E    V  +V+Q D        S+     
Sbjct: 83  KLNGRSSE----IQRLIGRSLRTIVDLKLLGERTITVDCDVIQADGG--TRTASITGGYV 136

Query: 137 ALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDA 184
           AL            +S  P  G V    V  +NG+ +L+    ++    +D+ V  T   
Sbjct: 137 ALADACRTLVKNGLISKTPIIGIVAATSVGIVNGEELLDLCYIEDSNAEVDMNVIMTDKG 196

Query: 185 VLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKL 221
             +      +    S+  +   +    +    +I+A +++
Sbjct: 197 EFIELQATGEKSSFSKKQLDKLLNLAESGIHELIKAQNEV 236


>gi|254369050|ref|ZP_04985063.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
 gi|157121971|gb|EDO66141.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
          Length = 235

 Score =  148 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 26/238 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R++       +   GS L   GDT+ I   ++              +  
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASV----VAGVPKFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
              +  Y  LP +T          G  S R     RL  RA+   +  TA    T+++  
Sbjct: 57  GWLIAEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + D+  DED     D  V    + GI  +Q   +    SE      L  AK+G   I
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 25  RQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T  V     K  +D     L   Y     +          R 
Sbjct: 22  KHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLIAEYGMLPRSTHMRMDREAAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I R++R          N  +V  +V+Q D        S+  AS A+ 
Sbjct: 81  GKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQADGG--TRTASITGASLAIA 138

Query: 140 LS-------GL------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
            +       G+      P    V    V   N + VL+   DED   +  +++ ++ +  
Sbjct: 139 DAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYDEDSNAETDMNVVMN-SNG 197

Query: 184 AVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
            ++ ++   E    SE+     +       K +
Sbjct: 198 GIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEI 230


>gi|262038518|ref|ZP_06011887.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
 gi|261747387|gb|EEY34857.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
          Length = 230

 Score =  148 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 24/234 (10%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
            R ++ +R++      +    GS L   G+T+ I   T+    +E+    L GT      
Sbjct: 4   NRKNDEMREVKVTKNYIMHPEGSVLIEFGNTKVICNATV----EEKVPPFLRGTNSGWIT 59

Query: 376 MHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y+ LP AT    +     G  S R +   RL  RA+   +        T+ I  ++ +
Sbjct: 60  AEYSMLPRATNNRVQREANKGRLSGRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQ 119

Query: 432 SDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G  LA       L+D G    +PI+  VA +++G +K+     IL D+ 
Sbjct: 120 ADGGTRTASITGGYLALELAIEKLIDKGKLNEIPINSRVAAVSVGKIKNE----ILLDLE 175

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +ED    +D  +   D G    +Q   +    ++  ++  ++ +K+G   + N
Sbjct: 176 YEEDFRADVDMNIIMNDKGEFIELQGTGEEATFTQEELLKFIEISKKGFEKLFN 229



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 23/209 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+     +  +     G +   +T  Y     A          +  R +
Sbjct: 25  GSVLIEFGNTKVICNATVEEKVPPFLRGTNSGWITAEYSMLPRATNNRVQREANK-GRLS 83

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R      K  +    +  +V+Q D        S+     AL L+  
Sbjct: 84  GRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQADGG--TRTASITGGYLALELAIE 141

Query: 142 ---------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
                     +P    V    V  I  + +L+   +ED +  +D+  +   +   + ++ 
Sbjct: 142 KLIDKGKLNEIPINSRVAAVSVGKIKNEILLDLEYEEDFRADVDMNIIMNDKGEFIELQG 201

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEA 217
              +   +++ +L  I       + +   
Sbjct: 202 TGEEATFTQEELLKFIEISKKGFEKLFNL 230


>gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378]
 gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023]
          Length = 248

 Score =  148 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R+I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++               P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQ 233

Query: 536 SKVLSE 541
            + L +
Sbjct: 234 KETLGD 239



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDEEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSEAELAELIALGKKGISELIEIQKE 235


>gi|77464799|ref|YP_354303.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
 gi|77389217|gb|ABA80402.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
          Length = 241

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T 
Sbjct: 4   SMRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTG 59

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   +R     G  S R     RL  RA+   + ++A     + I 
Sbjct: 60  LGWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVID 119

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G  +A       L+ AG+    PI   VA ++ G+         
Sbjct: 120 CDVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPIVDHVAAVSCGIYAGQP---- 175

Query: 476 LSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D     T  S +  +QM  +    S + M   L  A+ G   ++  
Sbjct: 176 VLDLDYAEDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAA 235

Query: 535 MSKV 538
               
Sbjct: 236 QKAA 239



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +E   + + ++G+ L   GET VL +   +           L   T  Y     A 
Sbjct: 16  RSVSIEPNVM-KHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVTAEYGMLPRAT 74

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 75  ----TSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQADGG-- 128

Query: 126 PHVVSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               S+     AL L       +G+    P    V         GQ VL+    ED    
Sbjct: 129 TRCASITGGWVALRLAVNKLLKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYAEDSTAG 188

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G    + + +  E    S D +   +         ++ A  
Sbjct: 189 TDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 237


>gi|313895897|ref|ZP_07829451.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975322|gb|EFR40783.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 248

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 21/244 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R D R  + +R +  + G  +   GS+L   G T+ +   ++    +E+    L G+  
Sbjct: 2   PRRDLRRHDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSASV----EERVPFFLKGSGT 57

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP A  E +      G  + R     RL  RA+  V+   A    T+ I  
Sbjct: 58  GWVTAEYAMLPGAGTERTAREAMRGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAG---------VPISKPVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A++ G+ +AL++A           P+    A +++G+   G +   L D
Sbjct: 118 DVVQADGGTRTASITGAFVALVEACATFYTKRGVFPVRDYTAAVSVGI---GAENTPLLD 174

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           I  +ED    +D  +  T +G    +Q   +    S   M   L   +RG   +++   +
Sbjct: 175 ICYEEDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKR 234

Query: 538 VLSE 541
            L E
Sbjct: 235 ALGE 238



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 31/231 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+++E G   R   G+ L   G T V    V   S+++   FF        +T  Y   
Sbjct: 13  RPVRIERG-YQRYPAGSALIEMGHTRV----VCSASVEERVPFFLKGSGTGWVTAEYAML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
             A  +       R  R T     I R+I R++R +       E    +  +V+Q D   
Sbjct: 68  PGAGTERTAREAMR-GRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQADGG- 125

Query: 125 SPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDY-INGQYVLNPRLDEDQ--- 171
                S+  A  AL+ +           P         V        +L+   +ED    
Sbjct: 126 -TRTASITGAFVALVEACATFYTKRGVFPVRDYTAAVSVGIGAENTPLLDICYEEDAQAM 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             ++L ++G    + +    E    S   +   +  G    + +I+   + 
Sbjct: 185 VDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRA 235


>gi|332655285|ref|ZP_08421025.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
 gi|332515790|gb|EGJ45400.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 25/242 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++ +R I     + +   GS L   G+T  +   ++    +++    +      
Sbjct: 3   RIDGRKNDELRPIEIIPNINKFAEGSCLIRCGNTHVLCTASV----EDKPPRHV-PEGEG 57

Query: 373 DFMMHYNFLPCATGEVSRMGAPS----RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP A  E SR          R     RL  R++  V+ +    P+ + I  +
Sbjct: 58  WVTAEYSMLPRANRERSRRDISKLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWNITIDCD 117

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + + DG +  A++ G  +A+M A             PIS  VA ++ G+V D    + + 
Sbjct: 118 VLQGDGGTRTASITGGFVAMMLAFQKMMEKGQLSEYPISGYVAAVSAGVVND----VPML 173

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D      D G +  +Q   +    +       ++   +G   +     
Sbjct: 174 DLCYEEDSSAMVDLNCVMDDQGRLIEIQGTGEGRPFTLEEQQKLVELCAKGIQELQAAQK 233

Query: 537 KV 538
           K 
Sbjct: 234 KA 235



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 37/226 (16%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           + ++G+ L   G T VL T   +        +G+ +  +T  Y     A  +        
Sbjct: 23  KFAEGSCLIRCGNTHVLCTASVEDKPPRHVPEGEGW--VTAEYSMLPRA-NRERSRRDIS 79

Query: 81  ESRPTENEILISRMIDRSIRPLFSK---CYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           + +       I R+I RS+R +  +      N   +  +V+Q D        S+     A
Sbjct: 80  KLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWN-ITIDCDVLQGDGG--TRTASITGGFVA 136

Query: 138 LM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGTQDAV 185
           +M           LS  P  G V       +N   +L+   +ED  ++ DL      + V
Sbjct: 137 MMLAFQKMMEKGQLSEYPISGYVAAVSAGVVNDVPMLDLCYEEDSSAMVDL------NCV 190

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEA----ISKLAKMCAK 227
           +  +    ++      +   F   E + ++E     I +L     K
Sbjct: 191 MDDQGRLIEI--QGTGEGRPFTLEEQQKLVELCAKGIQELQAAQKK 234


>gi|241767033|ref|ZP_04764818.1| ribonuclease PH [Acidovorax delafieldii 2AN]
 gi|241362436|gb|EER58380.1| ribonuclease PH [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 91/241 (37%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +           GS L   G+TQ +   ++    +++      GT   
Sbjct: 6   RSGGRAADQLRPVRITRRYTMHAEGSVLIEFGNTQVLCTASV----EDKVPPHQRGTGEG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT + S      G  S R     RL  R++  V         T+++  +
Sbjct: 62  WVTSEYGMLPRATHKRSDREAAKGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTIQLDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D              PI   VA I++G+V+       L 
Sbjct: 122 VIQADGGTRTAAITGAWVAAQDAVNQLLASGKITASPIRGSVAAISVGIVQGTP----LL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    +   M   L  A++G   ++    
Sbjct: 178 DLEYAEDVGCDTDMNVVMTGAGHFVEVQGTAEGAAFTRAEMDQLLGLAEKGIAELVALQQ 237

Query: 537 K 537
           +
Sbjct: 238 Q 238



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+++ T R    ++G+VL  +G T VL T   +  +   Q       +T  Y     A 
Sbjct: 16  RPVRI-TRRYTMHAEGSVLIEFGNTQVLCTASVEDKVPPHQRGTGEGWVTSEYGMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            K       +  + +     I R+I RS+R +F      E   Q+  +V+Q D       
Sbjct: 75  HKRSDREAAK-GKQSGRTQEIQRLIGRSLRAVFDLRLLGERTIQLDCDVIQADGG--TRT 131

Query: 129 VSMVAASAA-------LMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  A       L+ SG     P  G V    V  + G  +L+    ED      +
Sbjct: 132 AAITGAWVAAQDAVNQLLASGKITASPIRGSVAAISVGIVQGTPLLDLEYAEDVGCDTDM 191

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++ ++G    V +    E    +   +   +         ++    +
Sbjct: 192 NVVMTGAGHFVEVQGTAEGAAFTRAEMDQLLGLAEKGIAELVALQQQ 238


>gi|56476728|ref|YP_158317.1| ribonuclease PH [Aromatoleum aromaticum EbN1]
 gi|81598865|sp|Q5P5J6|RNPH_AZOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56312771|emb|CAI07416.1| Ribonuclease PH [Aromatoleum aromaticum EbN1]
          Length = 239

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +           GS L   G T+ +   ++    ++     L G  +
Sbjct: 1   MRPSQRRPDQLRAVMITRNFTCHAEGSVLVEFGATRVLCTASV----EDTVPPFLRGRGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  S R     RL  R++  V+  +A     + I  
Sbjct: 57  GWLTAEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A+ DA             P+ + VA +++G+ +     + +
Sbjct: 117 DVLQADGGTRTAAITGACVAVHDAFRKLVTEGKLPYSPLREFVAAVSVGMFQ----GVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T   G   +Q   +    S   +   L+ A+ G   ++   
Sbjct: 173 LDLDYAEDSGCDTDMNVVMTGAGGFVEVQGTAEGATFSRAELNALLELAESGIRRLVEAQ 232

Query: 536 SKVLSE 541
              +  
Sbjct: 233 KAAIDR 238



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 23/213 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL T   + ++     G+    LT  Y     A           + +
Sbjct: 24  AEGSVLVEFGATRVLCTASVEDTVPPFLRGRGQGWLTAEYGMLPRAT-HTRSAREAAKGK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM-- 139
            +     I R+I RS+R +       E Q++   +V+Q D        ++  A  A+   
Sbjct: 83  QSGRTQEIQRLIGRSLRAVVDLSALGERQIVIDCDVLQADGG--TRTAAITGACVAVHDA 140

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV-L 186
                    L   P    V    V    G  VL+    ED G    +++ ++G    V +
Sbjct: 141 FRKLVTEGKLPYSPLREFVAAVSVGMFQGVPVLDLDYAEDSGCDTDMNVVMTGAGGFVEV 200

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
               E    S   +   +    +  + ++EA  
Sbjct: 201 QGTAEGATFSRAELNALLELAESGIRRLVEAQK 233


>gi|146278691|ref|YP_001168850.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17025]
 gi|166228309|sp|A4WVY1|RNPH_RHOS5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145556932|gb|ABP71545.1| RNAse PH [Rhodobacter sphaeroides ATCC 17025]
          Length = 237

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G  S R     RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       L+ AG+    PI   VA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIVVSDPIVDHVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T    +  +QM  +    S + M   L  A+ G   ++   
Sbjct: 173 LDLDYAEDSTAGTDGNFVLTGRQRLIEVQMSAEGASFSRDEMGQLLDLAEAGIADLVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 78/229 (34%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +E   + + ++G+ L   GET VL +   +           L   T  Y     A 
Sbjct: 12  RSVSIEPNVM-KHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 71  ----TSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML-------SGLPFEGPV----VGAQVDYINGQYVLNPRLDEDQ--- 171
               S+     AL L       +G+    P+             GQ VL+    ED    
Sbjct: 125 TRCASITGGWVALRLAVNKLLKAGIVVSDPIVDHVAAVSCGIYAGQPVLDLDYAEDSTAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G Q  + + +  E    S D +   +         ++ A  
Sbjct: 185 TDGNFVLTGRQRLIEVQMSAEGASFSRDEMGQLLDLAEAGIADLVAAQK 233


>gi|258541167|ref|YP_003186600.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256632245|dbj|BAH98220.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256635302|dbj|BAI01271.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-03]
 gi|256638357|dbj|BAI04319.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-07]
 gi|256641411|dbj|BAI07366.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-22]
 gi|256644466|dbj|BAI10414.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-26]
 gi|256647521|dbj|BAI13462.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-32]
 gi|256650574|dbj|BAI16508.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653565|dbj|BAI19492.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-12]
          Length = 244

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ + G      GS+L   G T+ +   ++    + +    L G   
Sbjct: 1   MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASI----ENRVPPFLRGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V    A    ++ +  
Sbjct: 57  GWVTAEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A++ G+ +AL  A            +P+   VA ++ GL  +G     +
Sbjct: 117 DVLNADGGTRCASITGAWVALRLALGKLVATNVLPRLPLRGQVAAVSCGLTTEG----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T    I  +Q   +    +E+        A++G   +    
Sbjct: 173 LDLDYVEDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQ 232

Query: 536 SKVLSES 542
              +  +
Sbjct: 233 MAAVEAA 239



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 26/236 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ETG  A  ++G+ L   G T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RPITIETG-FAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E  +    +V+  D       
Sbjct: 71  -HTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDCDVLNADGG--TRC 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  AL L+            LP  G V            VL+    ED       
Sbjct: 128 ASITGAWVALRLALGKLVATNVLPRLPLRGQVAAVSCGLTTEGAVLDLDYVEDSSASADT 187

Query: 175 DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +  ++     ++ ++  A     +ED   +           + EA     +   K+
Sbjct: 188 NFVLTA-DRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQMAAVEAAEKK 242


>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           microorganism HF4000_APKG2H5]
          Length = 238

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 9/234 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   RMDGR    +R IS +VG++    GS+   R  T  ++    G    E +  
Sbjct: 8   QMIDENGRRMDGRKPADLRPISIEVGVVPVAAGSACV-RWGTNHVIAAVYGP--MEAHPR 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            +S   R    + YN  P +T +  R G  +RR     ++   A+  V+         +R
Sbjct: 65  KISRQDRAVLDVRYNMAPFSTTDRIRPGF-NRRSREISKVTSDALESVVLLEMYPRSKIR 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  EI  ++  +    +  +S+AL  AG+P++  V  +A G +    + +++ D++ +ED
Sbjct: 124 VEIEILCAEAGTRCVGLTAASVALAHAGIPMTDMVVSVASGKI----NGVVICDLNKEED 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G  D  +    +    + + M  G +S +    A        L +   M + 
Sbjct: 180 NYGEADLPMGMLPNSGDLVFLQMD-GDLSPDEFQQAWDYNMEAGLAVHEIMVQA 232



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 21/220 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD----GQDFFPLTVNYQERTYA 69
           RP+ +E G +   + G+    +G   V+A V             QD   L V Y    ++
Sbjct: 26  RPISIEVGVV-PVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLDVRYNMAPFS 84

Query: 70  -VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSP 126
              +I  G+ RR          IS++   ++    L     +++ +V I ++    E+  
Sbjct: 85  TTDRIRPGFNRR-------SREISKVTSDALESVVLLEMYPRSKIRVEIEILCA--EAGT 135

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
             V + AAS AL  +G+P    VV      ING  + +   +ED   +  L + +     
Sbjct: 136 RCVGLTAASVALAHAGIPMTDMVVSVASGKINGVVICDLNKEEDNYGEADLPMGMLPNSG 195

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            ++ ++++ + LS D    A  +       V E + +  K
Sbjct: 196 DLVFLQMDGD-LSPDEFQQAWDYNMEAGLAVHEIMVQALK 234


>gi|332559695|ref|ZP_08414017.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
 gi|332277407|gb|EGJ22722.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
          Length = 237

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G  S R     RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       L+ AG+    PI   VA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPIVDHVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  S +  +QM  +    S + M   L  A+ G   ++   
Sbjct: 173 LDLDYAEDSTAGTDGNFVFTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 76/229 (33%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +E   + + ++G+ L   GET VL +   +           L   T  Y     A 
Sbjct: 12  RSVSIEPNVM-KHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 71  ----TSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               S+     AL L       +G+    P    V         GQ VL+    ED    
Sbjct: 125 TRCASITGGWVALRLAVNKLLKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYAEDSTAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +   +G    + + +  E    S D +   +         ++ A  
Sbjct: 185 TDGNFVFTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233


>gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1]
 gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1]
          Length = 245

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 22/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR    +R +   +       GS+L   G+T+ +   ++    +E     L G QR
Sbjct: 2   VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASV----EEGVPQWLRGQQR 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP +T + +R        R     RL  RA+   +   A   +T+ +  ++
Sbjct: 58  GWVTGEYALLPRSTAQRTRRERNGVSGRTQEIQRLIGRALRAAVSLEALDGFTVTVDCDV 117

Query: 430 TESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A++ G  +AL             A  P+ + VA ++ G V        L D
Sbjct: 118 LQADGGTRTASITGGYVALALALHRLTAEGRLASNPLQRAVAAVSAGYV----AGCALLD 173

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +   ED +  MD  +  TD G I  +Q   +   +S       +  A  G   +L     
Sbjct: 174 LDYSEDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIRRLLAIQRA 233

Query: 538 V 538
            
Sbjct: 234 A 234



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 34/237 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGK- 72
           RP+++        ++G+ L   G T VL T   +          P  +  Q+R +  G+ 
Sbjct: 13  RPVRITIDTYGY-AEGSALIEMGNTRVLCTASVEEG-------VPQWLRGQQRGWVTGEY 64

Query: 73  ------IPGGYLRRESRPTENEILISRMIDRSIRPLFS----KCYKNETQVIINVMQHDL 122
                       R  +  +     I R+I R++R   S      +     V  +V+Q D 
Sbjct: 65  ALLPRSTAQRTRRERNGVSGRTQEIQRLIGRALRAAVSLEALDGFT--VTVDCDVLQADG 122

Query: 123 ESSPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQ-G 172
            +    ++    + AL L  L         P +  V      Y+ G  +L+    ED   
Sbjct: 123 GTRTASITGGYVALALALHRLTAEGRLASNPLQRAVAAVSAGYVAGCALLDLDYSEDSVA 182

Query: 173 SLDLFVSGTQD-AVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            +D  +  T D A++ V+   EA  +S       I    +  + ++          A
Sbjct: 183 DMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIRRLLAIQRAALAPVA 239


>gi|28493589|ref|NP_787750.1| ribonuclease PH [Tropheryma whipplei str. Twist]
 gi|28572785|ref|NP_789565.1| ribonuclease PH [Tropheryma whipplei TW08/27]
 gi|28410918|emb|CAD67303.1| ribonuclease PH [Tropheryma whipplei TW08/27]
 gi|28476631|gb|AAO44719.1| ribonuclease PH [Tropheryma whipplei str. Twist]
          Length = 256

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 94/242 (38%), Gaps = 25/242 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R + R  + +R +    G      GS+L   G+T+ +   T            L G +  
Sbjct: 21  RKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATF----QRGVPPFLRGQRSG 76

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +  E S      G  S R     RL  R++  +L + A    T+ +  +
Sbjct: 77  WITAEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCD 136

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + GS +AL DA V           P++  V+ +++GLV D     I  
Sbjct: 137 VLQADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQ----IFL 192

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  +  T SG +  +Q   +    S       ++ AK G    L E+ 
Sbjct: 193 DLDYSEDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTG-CQALKEIQ 251

Query: 537 KV 538
             
Sbjct: 252 AA 253



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 28/215 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L  +G T VL    + R +     GQ    +T  Y     +  +       +  +
Sbjct: 43  AEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWITAEYAMLPRSGTERSDRESVK-GK 101

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM-- 139
            +     ISR+I RS+R +  +    E  +I   +V+Q D        ++  +  AL   
Sbjct: 102 ISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQADGG--TRTAAITGSYIALYDA 159

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                    LS  P    V    V  +  Q  L+    ED   Q  ++L  +G+   ++ 
Sbjct: 160 LVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSEDSNAQADINLVFTGS-GKLVE 218

Query: 188 VELEANQLS-----EDVVLDAIIFGHNECKPVIEA 217
           ++  A +        + +++    G    K +  A
Sbjct: 219 IQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAA 253


>gi|284053737|ref|ZP_06383947.1| ribonuclease PH [Arthrospira platensis str. Paraca]
          Length = 241

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R +  ++   Q    S L   G+TQ +  VT+           L  T + 
Sbjct: 5   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPG----VPRFLQDTGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   +   A    T+ + +++ 
Sbjct: 61  WLTAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A             PI   +A I++G++        L D+
Sbjct: 121 QADAGTRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQIAAISVGMMHGE----ALLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D  GI  +Q   +   ++ N +   L  A++G   +     +V
Sbjct: 177 NYQEDVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 236



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 34/232 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP++ E     + +  +VLA  G T VL TV     ++ G   F        LT  Y+  
Sbjct: 15  RPVQFEL-DYTQFAAASVLAKSGNTQVLCTVT----IQPGVPRFLQDTGKGWLTAEYRML 69

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
               G  P    R   + +     I R+I RS+R         E  V    +V+Q D   
Sbjct: 70  P---GATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQADAG- 125

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QG 172
                S+     AL            L   P    +    V  ++G+ +L+    ED   
Sbjct: 126 -TRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQIAAISVGMMHGEALLDLNYQEDVAA 184

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +D  V    D  ++ ++   EA  L+ + +   + +       + +   ++
Sbjct: 185 DIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 236


>gi|254805268|ref|YP_003083489.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|254668810|emb|CBA06795.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|325136604|gb|EGC59205.1| ribonuclease PH [Neisseria meningitidis M0579]
          Length = 242

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 16/238 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
               D  +  T SG I  +Q   +    S + +   +  A++G   +L      LS +
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALSAA 242



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL +           S  P    V    V  +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D +   +         +++   
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQ 236


>gi|253583583|ref|ZP_04860781.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
 gi|251834155|gb|EES62718.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
          Length = 254

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 105/261 (40%), Gaps = 24/261 (9%)

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++  ++   +   K+R DGR  +++R+I           GS L   G+T+ I   ++  
Sbjct: 2   EVKEMIIEEDLRTLKLREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASV-- 59

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPV 412
              ++    + G  +      Y+ +P ATGE ++     G  S R +   RL  RA+   
Sbjct: 60  --SDKVPPFMRGQGKGWLTAEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTA 117

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAG 461
           +        T+ I  ++ ++DG +   ++ G  +AL             +  PI   VA 
Sbjct: 118 VDLDKLGERTITIDCDVIQADGGTRTTSISGGFIALALAVKKLMKDRVLSVNPIVSNVAA 177

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMA 520
           I++G+V        + D+   ED    +D  V     G    +Q   +    +   +   
Sbjct: 178 ISVGIV----RGTPMLDLMYTEDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNEL 233

Query: 521 LQQAKRGRLHILNEMSKVLSE 541
           +  A+ G   I+   ++++ E
Sbjct: 234 IDLAEVGIKEIIRLQNEIIGE 254



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 80/214 (37%), Gaps = 21/214 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T V+ T      +     GQ    LT  Y     A G+        + +
Sbjct: 40  AEGSVLIEFGNTKVICTASVSDKVPPFMRGQGKGWLTAEYSMIPRATGE-RNQRESAKGK 98

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM-- 139
            +   + I R+I R++R         E    +  +V+Q D  +    +S    + AL   
Sbjct: 99  LSGRTMEIQRLIGRALRTAVDLDKLGERTITIDCDVIQADGGTRTTSISGGFIALALAVK 158

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                  LS  P    V    V  + G  +L+    ED   +  +++ ++G  + V  V+
Sbjct: 159 KLMKDRVLSVNPIVSNVAAISVGIVRGTPMLDLMYTEDSAAEVDMNVVMNGKGEFV-EVQ 217

Query: 190 LEANQL--SEDVVLDAIIFGHNECKPVIEAISKL 221
               +   +   + + I       K +I   +++
Sbjct: 218 GTGEEATYTRKELNELIDLAEVGIKEIIRLQNEI 251


>gi|119503532|ref|ZP_01625615.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
 gi|119460594|gb|EAW41686.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
          Length = 243

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R I+ +        GS L   G T+ +   +L           L G  + 
Sbjct: 7   RPSGRALDELRAITFERNFTCHAEGSVLVSFGQTRVLCTASLTPG----VPGFLRGKGQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +TG         G  S R +   RL  R++   +   A    TL +  +
Sbjct: 63  WLTAEYGMLPRSTGSRMNREASRGKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A++D              P+   +  +++G+         + 
Sbjct: 123 VIQADGGTRTASISGACVAVVDALNTLQRKQSLQSDPLKFLIGAVSVGVW----KGQAVL 178

Query: 478 DISGDEDHLGHMDFKVAG-TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V      G+  +Q   +        +   L  A  G   I+++  
Sbjct: 179 DLDYAEDSTADTDMNVVVAEGGGLIEVQGTAEGAAFERAELNSMLDLAVAGGEIIISKQR 238

Query: 537 KVLS 540
           + LS
Sbjct: 239 EALS 242



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 68/189 (35%), Gaps = 29/189 (15%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGYLR 79
           ++G+VL ++G+T VL T     SL  G   F        LT  Y     + G        
Sbjct: 29  AEGSVLVSFGQTRVLCTA----SLTPGVPGFLRGKGQGWLTAEYGMLPRSTGSRMNREAS 84

Query: 80  RESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAA 137
           R  + +   + I R+I RS+R     K    N   +  +V+Q D        S+  A  A
Sbjct: 85  R-GKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDCDVIQADGG--TRTASISGACVA 141

Query: 138 L-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL-FVSGTQDA 184
           +            L   P +  +    V    GQ VL+    ED     D+  V      
Sbjct: 142 VVDALNTLQRKQSLQSDPLKFLIGAVSVGVWKGQAVLDLDYAEDSTADTDMNVVVAEGGG 201

Query: 185 VLMVELEAN 193
           ++ V+  A 
Sbjct: 202 LIEVQGTAE 210


>gi|33592677|ref|NP_880321.1| ribonuclease PH [Bordetella pertussis Tohama I]
 gi|33601937|ref|NP_889497.1| ribonuclease PH [Bordetella bronchiseptica RB50]
 gi|61216026|sp|Q7VXY3|RNPH_BORPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216032|sp|Q7WI90|RNPH_BORBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33572323|emb|CAE41877.1| ribonuclease PH [Bordetella pertussis Tohama I]
 gi|33576375|emb|CAE33453.1| ribonuclease PH [Bordetella bronchiseptica RB50]
 gi|332382092|gb|AEE66939.1| ribonuclease PH [Bordetella pertussis CS]
          Length = 246

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 24/252 (9%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           + T   D   R  GR  + +R  S + G  +   GS L   G+T  +   ++     E+ 
Sbjct: 1   MSTSAADTLSRPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASV----LEKV 56

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
              L G         Y  LP AT          G  S R     RL  R++  V      
Sbjct: 57  PPFLKGRGEGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLL 116

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLV 467
              TL +  ++ ++DG +  A++ G+ +A       LM  G     PI   VA +++GLV
Sbjct: 117 GERTLHLDCDVLQADGGTRCASITGAWVAAADAVALLMQRGDLAHNPIRDAVAAVSVGLV 176

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKR 526
               D   + D+   ED     D  V  T SG    +Q   +    +   +   L  A+ 
Sbjct: 177 ----DGRAVLDLDYQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEG 232

Query: 527 GRLHILNEMSKV 538
           G   ++    + 
Sbjct: 233 GIAQLVRAQREA 244



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 79/228 (34%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP  LE G   R ++G+VL   G T VL T      +     G+    +T  Y     A 
Sbjct: 21  RPFSLERG-FTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTAEYGMLPRAT 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
               G       + +     I R+I RS+R +F      E    +  +V+Q D       
Sbjct: 80  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQADGG--TRC 136

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A             L+  P    V    V  ++G+ VL+    ED      +
Sbjct: 137 ASITGAWVAAADAVALLMQRGDLAHNPIRDAVAAVSVGLVDGRAVLDLDYQEDSACAADV 196

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    +   +   +         ++ A  + 
Sbjct: 197 NVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREA 244


>gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39]
          Length = 242

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R +  ++   Q    S L   G+TQ +  VT+           L  T + 
Sbjct: 6   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPG----VPRFLQDTGKG 61

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   +   A    T+ + +++ 
Sbjct: 62  WLTAEYRMLPGATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVL 121

Query: 431 ESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL  A             PI   +A I++G++        L D+
Sbjct: 122 QADAGTRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQIAAISVGMMHGE----ALLDL 177

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D  GI  +Q   +   ++ N +   L  A++G   +     +V
Sbjct: 178 NYQEDVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 237



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 34/232 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP++ E     + +  +VLA  G T VL TV     ++ G   F        LT  Y+  
Sbjct: 16  RPVQFEL-DYTQFAAASVLAKSGNTQVLCTVT----IQPGVPRFLQDTGKGWLTAEYRML 70

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
               G  P    R   + +     I R+I RS+R         E  V    +V+Q D   
Sbjct: 71  P---GATPQRQPRELMKLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQADAG- 126

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QG 172
                S+     AL            L   P    +    V  ++G+ +L+    ED   
Sbjct: 127 -TRTTSINGGFVALAHAFNKMVKRGELKRSPIIHQIAAISVGMMHGEALLDLNYQEDVAA 185

Query: 173 SLDLFVSGTQD-AVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +D  V    D  ++ ++   EA  L+ + +   + +       + +   ++
Sbjct: 186 DIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQV 237


>gi|91787235|ref|YP_548187.1| ribonuclease PH [Polaromonas sp. JS666]
 gi|91696460|gb|ABE43289.1| RNAse PH [Polaromonas sp. JS666]
          Length = 243

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR+D R ++ +R +           GS L   G T+ +   ++    +E+      G+  
Sbjct: 5   VRVDARAADALRPVRITRHYTAYAEGSVLIEFGGTKVLCTASV----EEKVPGHKKGSGE 60

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  S R     RL  R++  V         T+ +  
Sbjct: 61  GWVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRSVFDLKKLGERTIYLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A+ D              PI   VA I++G+V+       L
Sbjct: 121 DVIQADGGTRTASITGAFVAVQDAVNQLLALGKLQETPILDHVAAISVGIVQGTP----L 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T +G    +Q   +    S   M   L  A++G   ++   
Sbjct: 177 LDLEYTEDSACDTDMNVVMTGAGNYVEVQGTAEGAAFSRKEMDALLVLAEKGIAELVGLQ 236

Query: 536 SK 537
            K
Sbjct: 237 KK 238



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 24/227 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++ T      ++G+VL  +G T VL T   +  +   K G     +T  Y     A 
Sbjct: 16  RPVRI-TRHYTAYAEGSVLIEFGGTKVLCTASVEEKVPGHKKGSGEGWVTAEYGMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +F   K  +    +  +V+Q D       
Sbjct: 75  -HTRSDREAARGKQSGRTQEIQRLIGRSMRSVFDLKKLGERTIYLDCDVIQADGG--TRT 131

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A+            L   P    V    V  + G  +L+    ED      +
Sbjct: 132 ASITGAFVAVQDAVNQLLALGKLQETPILDHVAAISVGIVQGTPLLDLEYTEDSACDTDM 191

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++ ++G  + V +    E    S   +   ++        ++    K
Sbjct: 192 NVVMTGAGNYVEVQGTAEGAAFSRKEMDALLVLAEKGIAELVGLQKK 238


>gi|61216045|sp|Q83FT1|RNPH_TROWT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216046|sp|Q83HF6|RNPH_TROW8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 247

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 94/242 (38%), Gaps = 25/242 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R + R  + +R +    G      GS+L   G+T+ +   T            L G +  
Sbjct: 12  RKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATF----QRGVPPFLRGQRSG 67

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +  E S      G  S R     RL  R++  +L + A    T+ +  +
Sbjct: 68  WITAEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCD 127

Query: 429 ITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + GS +AL DA V           P++  V+ +++GLV D     I  
Sbjct: 128 VLQADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQ----IFL 183

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  +  T SG +  +Q   +    S       ++ AK G    L E+ 
Sbjct: 184 DLDYSEDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTG-CQALKEIQ 242

Query: 537 KV 538
             
Sbjct: 243 AA 244



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 28/215 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L  +G T VL    + R +     GQ    +T  Y     +  +       +  +
Sbjct: 34  AEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWITAEYAMLPRSGTERSDRESVK-GK 92

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM-- 139
            +     ISR+I RS+R +  +    E  +I   +V+Q D        ++  +  AL   
Sbjct: 93  ISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQADGG--TRTAAITGSYIALYDA 150

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                    LS  P    V    V  +  Q  L+    ED   Q  ++L  +G+   ++ 
Sbjct: 151 LVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSEDSNAQADINLVFTGS-GKLVE 209

Query: 188 VELEANQLS-----EDVVLDAIIFGHNECKPVIEA 217
           ++  A +        + +++    G    K +  A
Sbjct: 210 IQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAA 244


>gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067]
          Length = 251

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 23/247 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R+DGR+S  +R I      L    GS L   G+T+ I   ++ T+        + G  
Sbjct: 3   QMRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEG 58

Query: 371 RNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           R      Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ + 
Sbjct: 59  RGWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLD 118

Query: 427 SEITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A++               P+   +A  ++G++++G     
Sbjct: 119 CDVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGG---T 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++  
Sbjct: 176 VLDLNYIEDSAAQVDMNIIMTGSGAFVELQGTGEETTFSEAELAELIALGKKGIAELIEI 235

Query: 535 MSKVLSE 541
             + L E
Sbjct: 236 QKETLGE 242



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 29  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYAMLPRATN-TRNIRESSKGKVT 87

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 88  GRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 145

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 146 KLDAEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNYIEDSAAQVDMNIIMTGS-GAFVEL 204

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 205 QGTGEETTFSEAELAELIALGKKGIAELIEIQKE 238


>gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
 gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
          Length = 277

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 16/235 (6%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++R+I      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 43  GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKEQGWVT 98

Query: 376 MHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ +
Sbjct: 99  AEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 158

Query: 432 SDGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +DG +  A++ G+ +A       L+  G+    P+      +       + L D+   ED
Sbjct: 159 ADGGTRTASITGAYVALQIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPED 218

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  +  T SG I  +Q   +    S   +   +  A +G   ++      
Sbjct: 219 SGCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAA 273



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           +DG+ L   G T V+ T   D ++     G++   +T  Y     +        +RRE  
Sbjct: 62  ADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYGMLPASTA----SRMRREAA 117

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             + +     I R+I RS+R +       E Q++   +V+Q D        S+  A  AL
Sbjct: 118 AGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG--TRTASITGAYVAL 175

Query: 139 MLS-------GLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGTQDA 184
            ++       GL  E P+  A      G     P LD D          +++ ++ +   
Sbjct: 176 QIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGCDSDVNIIMTAS-GK 234

Query: 185 VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++  A     S + +   I   H     +++   
Sbjct: 235 IIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 271


>gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665]
          Length = 254

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 26/231 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I+   G  ++  GS+L   G+T+ +   +      E     L G   
Sbjct: 9   PRPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFT----EGVPRWLKGEGT 64

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E S+     G    R     RL  R++  V+  +A    T+ +  
Sbjct: 65  GWVTAEYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDC 124

Query: 428 EITESDGSSSMATVCGSSLALMD-------AGVP------ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL +        G+       +   VA +++G+V    D +
Sbjct: 125 DVLDADGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIV----DGV 180

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQA 524
            + D+   ED     D  V  T +G    +Q   +    +   +   L  A
Sbjct: 181 PVLDLPYVEDVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLA 231



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 21/191 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  +RQ++G+ L  +G T VL T  +   +     G+    +T  Y     A 
Sbjct: 20  RPITITRGW-SRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTAEYAMLPRAT 78

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
            +       +  R       ISR+I RS+R +       E  ++++    D +      +
Sbjct: 79  NERSQRESVK-GRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDADGGTRTAA 137

Query: 131 MVAASAALMLS-------GLPFEG------PVVGAQVDYINGQYVLNPRLDED---QGSL 174
           +  A  AL  +       G+  +G       V    V  ++G  VL+    ED   +  +
Sbjct: 138 ITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVEDVKAETDM 197

Query: 175 DLFVSGTQDAV 185
           ++ V+G  + V
Sbjct: 198 NVVVTGAGEFV 208


>gi|284029809|ref|YP_003379740.1| ribonuclease PH [Kribbella flavida DSM 17836]
 gi|283809102|gb|ADB30941.1| ribonuclease PH [Kribbella flavida DSM 17836]
          Length = 238

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++     L    GS L   G T+ +   ++     E       G+   
Sbjct: 3   RIDGRTPDQLRPVTLTRKWLDHAEGSVLVEFGRTRVLCAASVT----EGVPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WVSAEYAMLPRSTNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTILLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL D            G P++  V+ +++G++    D   + 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVSFLRDRKALKGEPLTGSVSAVSVGII----DGTPML 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED     D  +  T  G    +Q   +        +   L+    G + +     
Sbjct: 175 DLCYEEDVRAETDMNLVLTGDGKFIEVQGTAEGAPFDRAELDSLLELGTAGCVELTKLQR 234

Query: 537 KV 538
           + 
Sbjct: 235 EA 236



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 83/231 (35%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ L T +    ++G+VL  +G T VL        +   + G     ++  Y     + 
Sbjct: 13  RPVTL-TRKWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVSAEYAMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  R       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 72  NTRSDRESVK-GRIGGRTHEISRLIGRSLRAVIDYKALGENTILLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            L G P  G V    V  I+G  +L+   +ED   +  +
Sbjct: 129 AAITGAYVALADAVSFLRDRKALKGEPLTGSVSAVSVGIIDGTPMLDLCYEEDVRAETDM 188

Query: 175 DLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAK 223
           +L ++G     + V+  A     D   +   +  G   C  + +   +   
Sbjct: 189 NLVLTG-DGKFIEVQGTAEGAPFDRAELDSLLELGTAGCVELTKLQREALA 238


>gi|47218202|emb|CAF97066.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 239

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 8/211 (3%)

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           MDFK+AGT+ GITA+Q D+KI G+   +++ A+QQA   +  IL  M+K +++ R    E
Sbjct: 1   MDFKLAGTNKGITALQADVKIPGLPLKLVMEAIQQATVAKREILAIMNKCIAKPRASRKE 60

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
             P VE + +P  +    +G GG  +R +  QTGA +N  D+ T  + + +   +    E
Sbjct: 61  NGPVVENVRVPVSKRARFVGPGGYNLRKLQAQTGATINQVDEETFSVFAPTPGAMNEVLE 120

Query: 609 MIRS-----ITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSD 662
            I            E   +Y   + ++ D G  V         L+H SQL  +R+   S 
Sbjct: 121 FISEISKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPNMSPVLLHNSQLDHKRIKHPSA 180

Query: 663 V-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 181 LGLEVGQQIQVKYFGRDPTDGRMRLSRKVLQ 211


>gi|90407865|ref|ZP_01216041.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
 gi|90311040|gb|EAS39149.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
          Length = 239

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  E  R+I           GS L   G+T+ +   ++     +     L G  +
Sbjct: 1   MRPSKRTPEQNREIKITRNFTDYAEGSVLIEIGNTKVLCNASV----SDSVPRFLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYAMLPRATHTRNQREAAKGKQGGRTLEIQRLIARSLRAAVDLDAFGENMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL D              P+ + +A +++G+ KD      +
Sbjct: 117 DVIQADGGTRTASITGACIALADALNWMVKEGKIKKSPLKQMIAAVSVGIYKDTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+  G+  +Q   + G  S   ++  L  AK G   ++ E 
Sbjct: 173 CDLDYAEDSNAQTDMNVVMTEDGGMIEIQGTAEDGAFSHEQLLAMLSLAKGGIDKLIVEQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 KKA 235



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 23/215 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T VL       S+     G+    +T  Y     A           + +
Sbjct: 24  AEGSVLIEIGNTKVLCNASVSDSVPRFLKGKGKGWVTAEYAMLPRAT-HTRNQREAAKGK 82

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM-- 139
                + I R+I RS+R         +N   V  +V+Q D        S+  A  AL   
Sbjct: 83  QGGRTLEIQRLIARSLRAAVDLDAFGENMITVDCDVIQADGG--TRTASITGACIALADA 140

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD-AVLMV 188
                    +   P +  +    V       V +    ED     D+ V  T+D  ++ +
Sbjct: 141 LNWMVKEGKIKKSPLKQMIAAVSVGIYKDTPVCDLDYAEDSNAQTDMNVVMTEDGGMIEI 200

Query: 189 EL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +   E    S + +L  +         +I    K 
Sbjct: 201 QGTAEDGAFSHEQLLAMLSLAKGGIDKLIVEQKKA 235


>gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
 gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
          Length = 248

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++               P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQ 233

Query: 536 SKVLSE 541
            + L E
Sbjct: 234 KETLGE 239



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYAMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALML--- 140
              + I R+I R++R +       E  +    +V+Q D        S+  A  A+++   
Sbjct: 85  GRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 141 ---SGLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
              + +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDAEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNYIEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSEAELAELIALGKKGIAELIEIQKE 235


>gi|325128546|gb|EGC51419.1| ribonuclease PH [Neisseria meningitidis N1568]
 gi|325143439|gb|EGC65766.1| ribonuclease PH [Neisseria meningitidis M01-240013]
          Length = 242

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 16/238 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
               D  +  T SG I  +Q   +    S + +   +  A++G   +L      LS +
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALSAA 242



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL +           S  P    V    V  +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D +   +         +++   
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQ 236


>gi|126463642|ref|YP_001044756.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17029]
 gi|166228308|sp|A3PNR8|RNPH_RHOS1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126105306|gb|ABN77984.1| RNAse PH [Rhodobacter sphaeroides ATCC 17029]
          Length = 237

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G  S R     RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       L+ AG+    PI   VA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPIVDHVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  S +  +QM  +    S + M   L  A+ G   ++   
Sbjct: 173 LDLDYAEDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +E   + + ++G+ L   GET VL +   +           L   T  Y     A 
Sbjct: 12  RSVSIEPNVM-KHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 71  ----TSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQ--- 171
               S+     AL L       +G+    P    V         GQ VL+    ED    
Sbjct: 125 TRCASITGGWVALRLAVNKLLKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYAEDSTAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G    + + +  E    S D +   +         ++ A  
Sbjct: 185 TDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233


>gi|114564986|ref|YP_752500.1| ribonuclease PH [Shewanella frigidimarina NCIMB 400]
 gi|122298386|sp|Q07WF3|RNPH_SHEFN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114336279|gb|ABI73661.1| RNAse PH [Shewanella frigidimarina NCIMB 400]
          Length = 237

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   GDT+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRSFTAHAEGSVLVEFGDTKVLCTASFT----EGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGIIKANPLKFLIAAVSVGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S   ++  L  AK     I++  
Sbjct: 173 SDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLVLAKNSIREIVDVQ 232

Query: 536 SKVLS 540
              LS
Sbjct: 233 KAALS 237



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 26/227 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T      ++G+VL  +G+T VL T  +   +     GQ    +T  Y     + 
Sbjct: 12  RPITI-TRSFTAHAEGSVLVEFGDTKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I R++R         E  ++   +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +       G+    P +  +    V    G+ + +    ED   +  +
Sbjct: 128 AAITGACVALVDALNWARGKGIIKANPLKFLIAAVSVGIYKGEAISDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++ T   ++ ++   E    S + +L+ ++   N  + +++   
Sbjct: 188 NVVMTET-GKIIEIQGTAEGEPFSHEELLELLVLAKNSIREIVDVQK 233


>gi|332188380|ref|ZP_08390105.1| ribonuclease PH [Sphingomonas sp. S17]
 gi|332011609|gb|EGI53689.1| ribonuclease PH [Sphingomonas sp. S17]
          Length = 238

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R I+ +    +   GS L   GDT+ +V  ++    +E+    L G   
Sbjct: 1   MRPSGRMPDQMRPITIEPNFTRHAEGSVLIGFGDTKVLVTASV----EERVPPFLRGKGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V    A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVCDLKALGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A       LM  G     PI   VA ++ G+         +
Sbjct: 117 DVIQADGGTRTAAISGAWVALRMAVNKLMAEGKLTSDPIRHKVAAVSCGI----HQGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D      ++G I  +Q   +     E  ++  L+ A+ G   I    
Sbjct: 173 LDLDYIEDSNADADANFVLIENGHIAEVQATAEHATYDEEALLRLLRLARMGCTEIFAAQ 232

Query: 536 SKVLSE 541
            + +  
Sbjct: 233 ERAIRA 238



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +E     R ++G+VL  +G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RPITIEPN-FTRHAEGSVLIGFGDTKVLVTASVEERVPPFLRGKGEGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q+    +V+Q D       
Sbjct: 71  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVCDLKALGERQITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            ++  A  AL            L+  P    V         G  VL+    ++     D 
Sbjct: 128 AAISGAWVALRMAVNKLMAEGKLTSDPIRHKVAAVSCGIHQGTPVLDLDYIEDSNADADA 187

Query: 177 FVSGTQDA-VLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
                ++  +  V+  A   +  E+ +L  +      C  +  A  + 
Sbjct: 188 NFVLIENGHIAEVQATAEHATYDEEALLRLLRLARMGCTEIFAAQERA 235


>gi|114566005|ref|YP_753159.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318883|sp|Q0AZR6|RNPH_SYNWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114336940|gb|ABI67788.1| RNAse PH [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 239

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R ++ +R +    G  +   GS L   GDT+ +         +E+    L G    
Sbjct: 3   RPQNRGNDQMRTVRIIPGFQKYPDGSVLIEAGDTRVMCSA----MMEEKVPPFLRGKGSG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T   ++     G  S R     RL  R++  V+   A    TL I  +
Sbjct: 59  WVTAEYSLLPSSTETRTQREASKGKISGRTSEIQRLIGRSLRAVVDMPAMGERTLWIDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + GS +AL           +   +P+   VA I++G++    D   + 
Sbjct: 119 VLQADGGTRTAAITGSFVALYLAFKKFKEQGIIETIPVKDFVAAISVGII----DGTPIL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  T +G    +Q   +    S   +   L+ A +G   ++    
Sbjct: 175 DLEYIEDSQADVDMNVVMTGNGDFIEIQGTAEGTVFSRAELDQLLELAGKGIQELIALQK 234

Query: 537 KV 538
            +
Sbjct: 235 TI 236



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 23/214 (10%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+VL   G+T V+ + + +  +     G+    +T  Y     +  +        + + 
Sbjct: 26  DGSVLIEAGDTRVMCSAMMEEKVPPFLRGKGSGWVTAEYSLLPSST-ETRTQREASKGKI 84

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHVVSMVAASAALMLS- 141
           +     I R+I RS+R +       E    +  +V+Q D        ++  +  AL L+ 
Sbjct: 85  SGRTSEIQRLIGRSLRAVVDMPAMGERTLWIDCDVLQADGG--TRTAAITGSFVALYLAF 142

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLNPRL---DEDQGSLDLFVSGTQDAV-LM 187
                      +P +  V    V  I+G  +L+       +    +++ ++G  D + + 
Sbjct: 143 KKFKEQGIIETIPVKDFVAAISVGIIDGTPILDLEYIEDSQADVDMNVVMTGNGDFIEIQ 202

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
              E    S   +   +       + +I     +
Sbjct: 203 GTAEGTVFSRAELDQLLELAGKGIQELIALQKTI 236


>gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171]
          Length = 248

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R I      L    GS L   G+T+ I   ++ T+        + G  R
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++               P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDFLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQ 233

Query: 536 SKVLSE 541
            + L E
Sbjct: 234 KETLGE 239



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYAMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALML--- 140
              + I R+I R++R +       E  +    +V+Q D        S+  A  A+++   
Sbjct: 85  GRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 141 ---SGLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
              + +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDAEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNYIEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSEAELAELIALGKKGIAELIEIQKE 235


>gi|167622362|ref|YP_001672656.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
 gi|189043775|sp|B0TQK4|RNPH_SHEHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167352384|gb|ABZ74997.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
          Length = 237

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 24/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R ++          GS L   GDT+ +   +     +E     L G  +
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASF----EEGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T    +     G  S R     RL  R++   +        T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G I  +Q   +    S   ++  L+ AK G   I++  
Sbjct: 173 CDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQ 232

Query: 536 S 536
            
Sbjct: 233 K 233



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 78/199 (39%), Gaps = 24/199 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G+T VL T  ++  +     GQ    +T  Y     + 
Sbjct: 12  RPVTI-TRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I RS+R         E  ++   +V+Q D       
Sbjct: 71  HSRMQREAAR-GKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +       G+    P +  +    V    G+ + +    ED   +  +
Sbjct: 128 AAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVELEAN 193
           ++ ++ T   ++ ++  A 
Sbjct: 188 NVVMTET-GKIIEIQGTAE 205


>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
 gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
          Length = 239

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 14/236 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D  +R+DGR    +R I    G++    GS+    G  + +V V +     E Y  
Sbjct: 5   KLINDDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYV----REAYPK 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 +      YN    +  E  R G P RR +   +L   A+   +         + 
Sbjct: 61  HAQNIDKAIVKARYNMAGFSVEERKRPG-PDRRTMEISKLISEALESAIMVERLPRAEID 119

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ E+D  + +A++  +S+A+ DAG+P+     G   G      +  ++ D+S DED
Sbjct: 120 VYIEVLEADAGTRIASLTAASVAVADAGIPMKDLPVGCTAGKA----NGKVVLDLSKDED 175

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G  D  +A       I  +Q+D   G +SE  +  A++       +I     + 
Sbjct: 176 NYGDADIPMAILPKSGKIILLQLD---GDVSEQELEEAMEMMLGAMKNISRIQREA 228



 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 94/216 (43%), Gaps = 18/216 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQ--DFFPLTVNYQERTYAV 70
           RP+++ TG +   +DG+    +G   ++  V V +   K  Q  D   +   Y    ++V
Sbjct: 23  RPIRITTGVV-DNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVKARYNMAGFSV 81

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
            +      R+   P    + IS++I  ++    +  +  + E  V I V++ D      +
Sbjct: 82  EE------RKRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLEADAG--TRI 133

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAV 185
            S+ AAS A+  +G+P +   VG      NG+ VL+   DED      + + +      +
Sbjct: 134 ASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLDLSKDEDNYGDADIPMAILPKSGKI 193

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++++L+ + +SE  + +A+       K +     + 
Sbjct: 194 ILLQLDGD-VSEQELEEAMEMMLGAMKNISRIQREA 228


>gi|220936120|ref|YP_002515019.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
 gi|254808601|sp|B8GPB2|RNPH_THISH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219997430|gb|ACL74032.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
          Length = 239

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R+I       +   GS L   GDT+ +   ++    D++    L     
Sbjct: 1   MRPSGRQPDQLREIRFTRRFTKHAEGSVLVEFGDTRVLCTASV----DDRTPPWLRNKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        G    R     RL  R++   +         + +  
Sbjct: 57  GWVTAEYGMLPRSTHERMAREAARGKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL D              P+   VA +++G+ +     + +
Sbjct: 117 DVLQADGGTRTASISGGYVALHDAITHLMKQGKLKRNPLFGAVASVSVGIYQ----GVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   D +    +Q   +      + +   L  A+ G   I+   
Sbjct: 173 LDLDYAEDSNAETDMNVVMNDANAFIEVQGTAEGHAFRMDELNSMLALAQSGIQDIIAAQ 232

Query: 536 SKVLSE 541
              L +
Sbjct: 233 RAALEQ 238



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R ++  T R  + ++G+VL  +G+T VL T   D         +    +T  Y     + 
Sbjct: 12  REIRF-TRRFTKHAEGSVLVEFGDTRVLCTASVDDRTPPWLRNKGSGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
            +       R  +       I R+I RS+R         E Q+    +V+Q D       
Sbjct: 71  HERMAREAAR-GKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+     AL   ++ L         P  G V    V    G  VL+    ED   +  +
Sbjct: 128 ASISGGYVALHDAITHLMKQGKLKRNPLFGAVASVSVGIYQGVPVLDLDYAEDSNAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++   +A + V+   E +    D +   +    +  + +I A     + 
Sbjct: 188 NVVMN-DANAFIEVQGTAEGHAFRMDELNSMLALAQSGIQDIIAAQRAALEQ 238


>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
 gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
          Length = 253

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 8/234 (3%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +  ++ D+ +R+DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G  +    
Sbjct: 1   MNKLISDQNLRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAV-YGPHQVRGR 59

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
              L           Y+    +T E  +     ++         +A+   +         
Sbjct: 60  TKPLL--DAAVINCQYSSAVFSTEERKKRPRGDKKSQEKSMHLCQALSAAIKTELYPKSQ 117

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  E+ +SDG S  A V  S+LAL+DAG+P+ + V      L  +    I L D++  
Sbjct: 118 IDIFVEVLQSDGGSFSAAVNVSTLALIDAGIPLKEYVTSCTASLANEN---IPLVDVTYL 174

Query: 483 EDHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           E+  G     +A       I  M+M  +        ++    +  +    ILNE
Sbjct: 175 EESCGGPTLTIATLPLAKKIALMEMSQRFHLDHLEKVLNTAMEGCKNIQVILNE 228



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS----LKDGQDFFPLTVNYQERTYA 69
           R ++ + G  + Q DG+     G T VLA V          K   D   +   Y    ++
Sbjct: 21  RQIRCKLGVFS-QPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAVINCQYSSAVFS 79

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
             +      ++  R  +     S  + +++          K++  + + V+Q D  S   
Sbjct: 80  TEE-----RKKRPRGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVLQSDGGSFS- 133

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQG---SLDLFVSGTQD 183
             ++  ++ AL+ +G+P +  V        N    +++    E+     +L +       
Sbjct: 134 -AAVNVSTLALIDAGIPLKEYVTSCTASLANENIPLVDVTYLEESCGGPTLTIATLPLAK 192

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            + ++E+       D +   +      CK +   +++  K
Sbjct: 193 KIALMEMSQRFHL-DHLEKVLNTAMEGCKNIQVILNEAVK 231


>gi|121635173|ref|YP_975418.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|161870362|ref|YP_001599532.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|218768484|ref|YP_002342996.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|304387097|ref|ZP_07369348.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|21759416|sp|Q9JTN2|RNPH_NEIMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228298|sp|A1KUT9|RNPH_NEIMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043768|sp|A9M0T5|RNPH_NEIM0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120866879|emb|CAM10638.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|121052492|emb|CAM08831.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|161595915|gb|ABX73575.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|304338846|gb|EFM04949.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|308389647|gb|ADO31967.1| ribonuclease PH [Neisseria meningitidis alpha710]
 gi|319410733|emb|CBY91115.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis WUE 2594]
 gi|325132653|gb|EGC55339.1| ribonuclease PH [Neisseria meningitidis M6190]
 gi|325134681|gb|EGC57321.1| ribonuclease PH [Neisseria meningitidis M13399]
 gi|325138569|gb|EGC61132.1| ribonuclease PH [Neisseria meningitidis ES14902]
 gi|325198624|gb|ADY94080.1| ribonuclease PH [Neisseria meningitidis G2136]
 gi|325201806|gb|ADY97260.1| ribonuclease PH [Neisseria meningitidis M01-240149]
 gi|325205751|gb|ADZ01204.1| ribonuclease PH [Neisseria meningitidis M04-240196]
 gi|325208441|gb|ADZ03893.1| ribonuclease PH [Neisseria meningitidis NZ-05/33]
          Length = 242

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 16/238 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
               D  +  T SG I  +Q   +    S + +   +  A++G   +L      LS +
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALSAA 242



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL +           S  P    V    V  +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D +   +         +++   
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQ 236


>gi|326773720|ref|ZP_08233003.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
 gi|326636950|gb|EGE37853.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
          Length = 268

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 92/253 (36%), Gaps = 28/253 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ +   +      E       G+   
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFT----EGVPRWRKGSGEG 63

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E S      G    R     RL  R++  ++   A    T+ +  +
Sbjct: 64  WVTAEYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMDA--------------GVP-ISKPVAGIAMGLVKDGDDF 473
           + ++DG +  A + G+ +AL DA              G P +S  ++ I++G++    D 
Sbjct: 124 VLQADGGTRTAAITGAYVALTDAVAWGTQRGLIKARPGKPVLSDSLSAISVGII----DG 179

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +   D+  +ED     D  V  T  G    +Q   +      + +   L  A  G   + 
Sbjct: 180 VPCLDLPYEEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLA 239

Query: 533 NEMSKVLSESRLQ 545
               + L+    +
Sbjct: 240 ALQRQALAGPSGE 252



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 29/235 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL T+G T VL    +   +   + G     +T  Y     A  +  G    R  +
Sbjct: 30  AEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTAEYAMLPRAGSERSGRESVR-GK 88

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
                  ISR+I RS+R +       E  +    +V+Q D        ++  A  AL  +
Sbjct: 89  VGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQADGG--TRTAAITGAYVALTDA 146

Query: 142 --------------GLP-FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
                         G P     +    V  I+G   L+   +ED   Q  +++  +G   
Sbjct: 147 VAWGTQRGLIKARPGKPVLSDSLSAISVGIIDGVPCLDLPYEEDVRAQTDMNVVQTG-DG 205

Query: 184 AVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
             + V+  A     D   + + +         +     +     + EP  + S +
Sbjct: 206 RFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALAGPSGEPFTVSSVE 260


>gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 26/226 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R DGR ++ +R+I+ +    ++  GS+L   G T+ +   +   R         
Sbjct: 1   MTDDTPRHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNR----VPRWK 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +G+ +      Y  LP AT E        G    R     RL  R++  V+   A    T
Sbjct: 57  AGSGQGWVTAEYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKD 469
           + I  ++ ++DG +  A + G+ +AL D                P+   VA +++G+V  
Sbjct: 117 IVIDCDVLQADGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIV-- 174

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
             D   L D++  ED     D  V  T SG    +Q   +      
Sbjct: 175 --DGKPLLDLAYVEDVRAETDMNVVMTGSGSFVEVQGTAEGAPFDR 218



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 29/195 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           R + +E    + Q++G+ L ++G T VL T      V       GQ +  +T  Y     
Sbjct: 17  REITIERNW-SEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGW--VTAEYAMLPR 73

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
           A  +       +  +       ISR+I RS+R +       E  ++   +V+Q D     
Sbjct: 74  ATNERMDREAVK-GKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQADGG--T 130

Query: 127 HVVSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
              ++  A  AL  +               P +  V    V  ++G+ +L+    ED   
Sbjct: 131 RTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVEDVRA 190

Query: 171 QGSLDLFVSGTQDAV 185
           +  +++ ++G+   V
Sbjct: 191 ETDMNVVMTGSGSFV 205


>gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
 gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
          Length = 254

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 26/231 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I+   G  ++  GS+L   G+T+ +   +      E     L G   
Sbjct: 9   PRPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFT----EGVPRWLKGEGT 64

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E ++     G    R     RL  R++  V+  +A    T+ +  
Sbjct: 65  GWVTAEYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDC 124

Query: 428 EITESDGSSSMATVCGSSLALMD-------AGVP------ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL +        G+       +   VA +++G+V    D +
Sbjct: 125 DVLDADGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIV----DGV 180

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQA 524
            + D+   ED     D  V  T +G    +Q   +    +   +   L  A
Sbjct: 181 PVLDLPYVEDVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLA 231



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 21/191 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G  +RQ++G+ L  +G T VL T  +   +     G+    +T  Y     A 
Sbjct: 20  RPITITRGW-SRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTAEYAMLPRAT 78

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
            +       +  R       ISR+I RS+R +       E  ++++    D +      +
Sbjct: 79  NERNQRESVK-GRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDADGGTRTAA 137

Query: 131 MVAASAALMLS-------GLPFEG------PVVGAQVDYINGQYVLNPRLDED---QGSL 174
           +  A  AL  +       G+  +G       V    V  ++G  VL+    ED   +  +
Sbjct: 138 ITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVEDVKAETDM 197

Query: 175 DLFVSGTQDAV 185
           ++ V+G  + V
Sbjct: 198 NVVVTGAGEFV 208


>gi|237748601|ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
 gi|229379963|gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
          Length = 247

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR  +++R I       +   GS L + GDT+ I   ++    +E     L G  R
Sbjct: 7   IRANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASI----EESVPPFLRGRGR 62

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R+I       A    TL++  
Sbjct: 63  GWLTAEYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDC 122

Query: 428 EITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A  DA            VP+   VA I++G+    +  + L
Sbjct: 123 DVIQADGGTRTASISGVMIAAYDAFSMMVEEGLIDKVPLRHFVAAISVGV----NQGVPL 178

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G    +Q   + G  S   +   L  A++G   ++   
Sbjct: 179 LDLDYQEDSTCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQ 238

Query: 536 SKV 538
            KV
Sbjct: 239 KKV 241



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 19/215 (8%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL  +G+T V+ T   + S+     G+    LT  Y     +            
Sbjct: 28  KYAEGSVLTVFGDTKVICTASIEESVPPFLRGRGRGWLTAEYGMLPRST-HTRMDREAAR 86

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVS--MVAASAA 137
            R +     I R+I RSIR  F      E   ++  +V+Q D  +    +S  M+AA  A
Sbjct: 87  GRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDCDVIQADGGTRTASISGVMIAAYDA 146

Query: 138 LM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                    +  +P    V    V    G  +L+    ED      +++ ++   + V +
Sbjct: 147 FSMMVEEGLIDKVPLRHFVAAISVGVNQGVPLLDLDYQEDSTCDTDMNVVMTEAGEFVEI 206

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
               E    S   + D +         +I    K+
Sbjct: 207 QGTAEGGAFSRQTLNDMLGMAEKGISELIGMQKKV 241


>gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
 gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
          Length = 250

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 26/222 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +RDIS   G   +  GS+L   G+T+ +   +L     E     L G  R 
Sbjct: 11  RADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLT----EGVPRWLRGEGRG 66

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  +
Sbjct: 67  WVTAEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCD 126

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL +                P++  VA ++ G++    D + 
Sbjct: 127 VLQADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGII----DTVP 182

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENI 516
           + D++  ED     D  V  T SG    +Q   +      N 
Sbjct: 183 MLDLAYVEDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNQ 224



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 33/197 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           R + +  G  + Q++G+ L  +G T VL T     SL +G   +        +T  Y   
Sbjct: 21  RDISITRGW-SSQAEGSALIEFGNTRVLCT----SSLTEGVPRWLRGEGRGWVTAEYAML 75

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
             A          +  +       ISR+I RS+R +       E  ++   +V+Q D   
Sbjct: 76  PRATNTRSDRESVK-GKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQADGG- 133

Query: 125 SPHVVSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED- 170
                ++  A  AL  S               P    V       I+   +L+    ED 
Sbjct: 134 -TRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIIDTVPMLDLAYVEDV 192

Query: 171 --QGSLDLFVSGTQDAV 185
             +  +++ V+G+   V
Sbjct: 193 RAETDMNVVVTGSGKFV 209


>gi|86159780|ref|YP_466565.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496476|sp|Q2IEX1|RNPH_ANADE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85776291|gb|ABC83128.1| RNAse PH [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR    +R I  +  + +   GS L   GDT  +   ++    DE+    + GT  
Sbjct: 1   MRKNGRGPLDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASV----DEKVPPHVYGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +     G  + R +   RL  RA+   +   A  P T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+            A  P+ + VA +++G+V       + 
Sbjct: 117 DVIQADGGTRTAAITGAYVALVQAVRSIQKRKQLAHDPVKRSVAAVSVGIVAGE----VH 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED    +D  V  T  G +  +Q   +    +   +   L  A  G   +    
Sbjct: 173 LDLDYDEDSTAEVDMNVVATGEGALVEVQGTAEGKPFARAELDRMLDAALAGLSRLKELQ 232

Query: 536 SKVLSES 542
              L   
Sbjct: 233 EAALRTP 239



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 31/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE  R+++ ++G+ L  +G+T VL T   D  +     G     +T  Y     + 
Sbjct: 12  RPILLEP-RVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
            +       R  + T   + I R++ R++R      +   +    +  +V+Q D      
Sbjct: 71  HERMQREAAR-GKQTGRTLEIQRLVGRALRAAVDLRAIGPRT-VTLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  A  AL            L+  P +  V    V  + G+  L+   DED   +  
Sbjct: 127 TAAITGAYVALVQAVRSIQKRKQLAHDPVKRSVAAVSVGIVAGEVHLDLDYDEDSTAEVD 186

Query: 174 LDLFVSGTQDAVLMVELEANQLS-----EDVVLDAIIFGHNECKPVIEA 217
           +++  +G + A++ V+  A          D +LDA + G +  K + EA
Sbjct: 187 MNVVATG-EGALVEVQGTAEGKPFARAELDRMLDAALAGLSRLKELQEA 234


>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
 gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
          Length = 372

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 8/209 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +++ +   R+DGR    +R+I+ ++GL +   GS     G+T+ +  V  G  E +    
Sbjct: 118 SIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYEGKA--- 173

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S     R   +  Y+    +  E        R+     RL  +A   V+   +     + 
Sbjct: 174 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQID 233

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DGS+  A V  +SLAL DAG+P+    +    G+V    D   + D++  E+
Sbjct: 234 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIV----DAKPIVDLTSREE 289

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
                   V+G  S I  +    ++  I 
Sbjct: 290 TDLLPRVTVSGFSSIILLLHSKFQLATIC 318



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 12/151 (7%)

Query: 25  RQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R ++G+    +G T VL  V      ++ K  +D   +   Y     +     G   +  
Sbjct: 146 RNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVCQY-----STTTFSGLERKNR 200

Query: 82  SRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            R       ISR+++++   +       +++  +   V+Q D  +      + A S AL 
Sbjct: 201 PRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSNLA--ACVNATSLALA 258

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
            +G+P +G    A    ++ + +++    E+
Sbjct: 259 DAGIPMKGIASAATCGIVDAKPIVDLTSREE 289


>gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans]
 gi|133739214|emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R  GR ++ +R I       +   GS L   GDT+ I   ++    +++    L G  
Sbjct: 4   ENRPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASI----EDRVPGFLKGKG 59

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP +T          G  S R     RL  R++       A    TL + 
Sbjct: 60  QGWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLD 119

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +A  DA            +P+   VA I++G+ K       
Sbjct: 120 CDVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQP---- 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+  DED     D  +  TD+G    +Q   +        M   L  A+ G   ++  
Sbjct: 176 VLDLDYDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVM 235

Query: 535 MSKV 538
             + 
Sbjct: 236 QKQA 239



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+VL   G+T V+ T   +  +     G+    LT  Y     +            
Sbjct: 26  KHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTAEYGMLPRST-HTRMDREAAR 84

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVV--SMVAASAA 137
            + +     I R+I RS+R  F      E    +  +V+Q D  +    +  +MVAA  A
Sbjct: 85  GKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQADGGTRTAAITGTMVAAYDA 144

Query: 138 LM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-L 186
                    +  +P +  V    V    GQ VL+   DED      +++ ++     + +
Sbjct: 145 FSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDEDSDCDTDMNIVMTDAGHFIEV 204

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
               E        +   +    +  + +I    +   + A
Sbjct: 205 QGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQALAIAA 244


>gi|325290671|ref|YP_004266852.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
 gi|324966072|gb|ADY56851.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R+  R+++ +R +       +   GS L   G T  +   ++    +++    L G  +
Sbjct: 2   PRIAERNNQELRPVRITRRYTEIPEGSVLIEIGKTMVLCTASI----EDRVPPFLKGAGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP ATG  ++     G  S R +   RL  RA+  V+  +     T+ +  
Sbjct: 58  GWITAEYSMLPRATGVRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D              PI+  +A +++G V+       L
Sbjct: 118 DVLQADGGTRTAAITGAYVALHDAVSFLLGAGLLKTNPITDSLAAVSVGKVRGE----YL 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++ +ED    +D  V  T SG +  +Q   +        +   L  A+ G   ++   
Sbjct: 174 LDLAYEEDSKAEVDMNVVMTGSGKLIEVQGTAEKEPFDRKELDELLDLAENGIRTLMGYQ 233

Query: 536 SKVLSE 541
            + L E
Sbjct: 234 RQALEE 239



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 91/236 (38%), Gaps = 26/236 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T R     +G+VL   G+T+VL T   +  +     G     +T  Y     A 
Sbjct: 13  RPVRI-TRRYTEIPEGSVLIEIGKTMVLCTASIEDRVPPFLKGAGKGWITAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
           G +       + + +   + I R+I R++R +       E  +    +V+Q D       
Sbjct: 72  G-VRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            L   P    +    V  + G+Y+L+   +ED   +  +
Sbjct: 129 AAITGAYVALHDAVSFLLGAGLLKTNPITDSLAAVSVGKVRGEYLLDLAYEEDSKAEVDM 188

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++ ++G+   ++ V+  A +       + + +    N  + ++    +  +   + 
Sbjct: 189 NVVMTGS-GKLIEVQGTAEKEPFDRKELDELLDLAENGIRTLMGYQRQALEEIGRP 243


>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
 gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++ +R +    G L    GS L   G T+ +   ++     E       GT   
Sbjct: 3   RVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASV----LEGVPKWRKGTGLG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  R++   +        T+ +  +
Sbjct: 59  WVTGEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ LAL DA             P+ + VA +++G+V    D + + 
Sbjct: 119 VLQADGGTRTAAITGAYLALADACRWMRDHGWVTSDPLVRSVAAVSVGIV----DGVPVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  DED     D  V  T  G    +Q   +   +  + +   L+ A RG   +     
Sbjct: 175 DLCYDEDVRAGTDMNVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQR 234

Query: 537 KVLSES 542
             L+E+
Sbjct: 235 TALAEA 240



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 76/232 (32%), Gaps = 24/232 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV---YDRSLKDGQDFFPLTVNYQERTYAV 70
           RP++   G +   ++G+VL  +G T VL            + G     +T  Y     A 
Sbjct: 13  RPVRFTRGWLLH-AEGSVLVEFGRTRVLCAASVLEGVPKWRKGTGLGWVTGEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                       R       ISR++ RS+R          N   +  +V+Q D       
Sbjct: 72  -TTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSL 174
            ++  A  AL            ++  P    V    V  ++G  VL+   DED      +
Sbjct: 129 AAITGAYLALADACRWMRDHGWVTSDPLVRSVAAVSVGIVDGVPVLDLCYDEDVRAGTDM 188

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           ++ ++G  D V +    E   L  D V   +      C  + E         
Sbjct: 189 NVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQRTALAEA 240


>gi|145589263|ref|YP_001155860.1| ribonuclease PH [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047669|gb|ABP34296.1| RNAse PH [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 246

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 24/235 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R ++      +   GS L   GDT+ +   ++     ++      G+   
Sbjct: 11  RPSGRKPKDLRPVTISRAFTKHAEGSVLIAFGDTKVLCTASI----LDKVPPHKRGSGEG 66

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  RA+  V         T+ +  +
Sbjct: 67  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFNLKTLGERTIHLDCD 126

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A  D              PI   VA I++G+ +       + 
Sbjct: 127 VLQADGGTRTASITGAYVAARDAVNQLLKSGALTQDPIIDSVAAISVGIYQ----GAPVL 182

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D+   ED     D  V  T   G+  +Q   +    S   +   L  A++G   +
Sbjct: 183 DLDYPEDSSCDTDMNVVMTGKGGMIEVQGTAEGAAFSRAELNALLDLAEQGIQEL 237



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +      + ++G+VL  +G+T VL T      +     G     +T  Y     + 
Sbjct: 21  RPVTISR-AFTKHAEGSVLIAFGDTKVLCTASILDKVPPHKRGSGEGWVTAEYGMLPRST 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R +F+     E    +  +V+Q D       
Sbjct: 80  -HTRSDREAARGKQSGRTQEIQRLIGRAMRSVFNLKTLGERTIHLDCDVLQADGG--TRT 136

Query: 129 VSMVAASAA-------LMLSGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            S+  A  A       L+ SG     P    V    V    G  VL+    ED      +
Sbjct: 137 ASITGAYVAARDAVNQLLKSGALTQDPIIDSVAAISVGIYQGAPVLDLDYPEDSSCDTDM 196

Query: 175 DLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++G +  ++ V+  A     S   +   +       + + +      K
Sbjct: 197 NVVMTG-KGGMIEVQGTAEGAAFSRAELNALLDLAEQGIQELTQLQIDSLK 246


>gi|257463721|ref|ZP_05628110.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|317061266|ref|ZP_07925751.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|313686942|gb|EFS23777.1| ribonuclease PH [Fusobacterium sp. D12]
          Length = 249

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R+I           GS L   G+T+ I   ++     E+    L  T + 
Sbjct: 3   RLDGRRENQLREIKITRDFNMHAEGSVLIESGNTKVICTASV----SEKVPSFLKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  +P ATGE ++     G  S R +   RL  RA+   +        T+ +  +
Sbjct: 59  WLTAEYCMIPRATGERTQREAAKGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +A+                P+   VA +++G  ++     IL 
Sbjct: 119 VIQADGGTRTASITGSFIAMAIAVAKLLKEEILTESPVLSRVAAVSVGKHENS----ILL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED    +D  V   D G    +Q   +        +   L  A+ G   +L +  
Sbjct: 175 DLNYEEDSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQK 234

Query: 537 KVLSESRLQL 546
           +VL E    +
Sbjct: 235 EVLGEDYEII 244



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERTYAVGKIPGGYLRR 80
           ++G+VL   G T V+ T      +     F        LT  Y     A G+        
Sbjct: 25  AEGSVLIESGNTKVICTASVSEKVP---SFLKNTGKGWLTAEYCMIPRATGE-RTQREAA 80

Query: 81  ESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
           + + +   + I R+I R++R      K  +    +  +V+Q D        S+  +  A+
Sbjct: 81  KGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCDVIQADGG--TRTASITGSFIAM 138

Query: 139 MLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
            ++             P    V    V       +L+   +ED  
Sbjct: 139 AIAVAKLLKEEILTESPVLSRVAAVSVGKHENSILLDLNYEEDSS 183


>gi|238022211|ref|ZP_04602637.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
 gi|237866825|gb|EEP67867.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
          Length = 243

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 24/231 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R ++     L    GS L + G+T+ I   T+    D+     L G  +     
Sbjct: 8   RAAHQLRPVAITPNFLPHADGSVLMVCGNTKVICTATV----DDNVPPFLRGKNQGWVTA 63

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    +     G  S R     RL  R++   +  T      + I  ++ ++
Sbjct: 64  EYGMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQA 123

Query: 433 DGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +A       L+D G     P+   VA ++ G+V    + + L D+  
Sbjct: 124 DGGTRTASITGAFVALQIAIQKLLDNGTLPANPLIGSVAAVSAGMV----NGVPLLDLDY 179

Query: 482 DEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            ED     D  +   +   I  +Q   +    S   +   +  A++G   +
Sbjct: 180 PEDSGCDSDVNIVMLNAENIIEIQGTAEGAAFSVAELNALIALAQQGIAQL 230



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 31/212 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           +DG+VL   G T V+ T   D ++     G++   +T  Y     +        ++RE  
Sbjct: 26  ADGSVLMVCGNTKVICTATVDDNVPPFLRGKNQGWVTAEYGMLPAST----QSRMKREAA 81

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             + +     I R+I RS+R         E Q++   +V+Q D        S+  A  AL
Sbjct: 82  AGKQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQADGG--TRTASITGAFVAL 139

Query: 139 MLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
            ++             P  G V       +NG  +L+    ED      +++ +    + 
Sbjct: 140 QIAIQKLLDNGTLPANPLIGSVAAVSAGMVNGVPLLDLDYPEDSGCDSDVNIVML-NAEN 198

Query: 185 VLMVELEAN--QLSEDVVLDAIIFGHNECKPV 214
           ++ ++  A     S   +   I         +
Sbjct: 199 IIEIQGTAEGAAFSVAELNALIALAQQGIAQL 230


>gi|224585533|ref|YP_002639332.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470061|gb|ACN47891.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 228

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 24/233 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R ++      +   GS L   GDT+ +   ++    +E     L G  +      Y  L
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEYGML 56

Query: 382 PCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT   +      G    R +   RL  RA+   +       +T+ +  ++ ++DG + 
Sbjct: 57  PRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGGTR 116

Query: 438 MATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G+ +AL D              P+   VA +++G+V        + D+   ED  
Sbjct: 117 TASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGE----AICDLEYVEDSA 172

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+      
Sbjct: 173 AETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAA 225



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ L T    + ++G+VL  +G+T VL T   +  +     GQ    +T  Y     A 
Sbjct: 2   RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 61  -HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGG--TRT 117

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            S+  A  AL            L   P +G V    V  +NG+ + +    ++     D+
Sbjct: 118 ASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDM 177

Query: 177 FVSGTQDA-VLMVELEAN 193
            V  T+D  ++ V+  A 
Sbjct: 178 NVVMTEDGRIIEVQGTAE 195


>gi|241667227|ref|ZP_04754805.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875778|ref|ZP_05248488.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254841799|gb|EET20213.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 235

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 26/240 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ +   ++              +  
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASV----VAGVPRFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  T     T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+  DED     D  V    + G+  +Q   +    SE      L  AK+G   I  
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 28/228 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R LK+ T    + ++G+VL  +G+T VL T  V     +  +D     LT  Y     + 
Sbjct: 12  RTLKV-THNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R     +K  +N  +V  +V+Q D       
Sbjct: 71  -HTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  AS A+  +               P    V    V   N + VL+   DED   + 
Sbjct: 128 ASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEPVLDLDYDEDSNAET 187

Query: 173 SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
            +++ ++ +   ++ ++   E    SE+     +       K + E+I
Sbjct: 188 DMNVVMN-SNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFESI 234


>gi|197123834|ref|YP_002135785.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|220918599|ref|YP_002493903.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
 gi|226736882|sp|B4UBI2|RNPH_ANASK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808575|sp|B8J5H5|RNPH_ANAD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196173683|gb|ACG74656.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|219956453|gb|ACL66837.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 239

 Score =  146 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR    +R I  +  + +   GS L   GDT  +   ++    DE+    + GT  
Sbjct: 1   MRKNGRGELDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASV----DEKVPPHVYGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E  +     G  + R +   RL  RA+   +   A  P T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+            A  P+ + VA +++G+V       + 
Sbjct: 117 DVIQADGGTRTAAITGAYVALVQAVRGIQKRRQLAQDPVKRSVAAVSVGIV----AGQVH 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED    +D  V  T  G +  +Q   +        +   L  A  G   +    
Sbjct: 173 LDLDYDEDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRAELDRMLDAALAGLSRLKELQ 232

Query: 536 SKVLSES 542
              L   
Sbjct: 233 EAALRTP 239



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 31/233 (13%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQER 66
           E   RP+ LE  R+++ ++G+ L  +G+T VL T   D  +     G     +T  Y   
Sbjct: 8   ELDLRPILLEP-RVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVTAEYGML 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLE 123
             +  +       R  + T   + I R++ R++R      +   +    +  +V+Q D  
Sbjct: 67  PRSTHERMQREAAR-GKQTGRTLEIQRLVGRALRAAVDLRAIGPRT-VTLDCDVIQADGG 124

Query: 124 SSPHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                 ++  A  AL            L+  P +  V    V  + GQ  L+   DED  
Sbjct: 125 --TRTAAITGAYVALVQAVRGIQKRRQLAQDPVKRSVAAVSVGIVAGQVHLDLDYDEDST 182

Query: 171 -QGSLDLFVSGTQDAVLMVELEANQLS-----EDVVLDAIIFGHNECKPVIEA 217
            +  +++  +G   A++ V+  A          D +LDA + G +  K + EA
Sbjct: 183 AEVDMNVVATG-DGALVEVQGTAEGKPFPRAELDRMLDAALAGLSRLKELQEA 234


>gi|251773010|gb|EES53566.1| ribonuclease PH [Leptospirillum ferrodiazotrophum]
          Length = 238

 Score =  146 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 24/242 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR S+ +R +S      +   GS+L   G T  +  V+L    +E+    L    R
Sbjct: 1   MRSDGRTSDQLRTLSIDPSPNRYAEGSALIRMGFTHVLATVSL----EEKVPPFLKDQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E S      G  S R     RL  R++  V+        T  I  
Sbjct: 57  GWVTAEYGMLPRSTHERSPREAARGKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTATIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  P+   +A +++G+V    D    
Sbjct: 117 DVIQADGGTRCASIGGAFVALALAFSNLKKVGVIAESPLVDYLAAVSVGIV----DGEPC 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T  G +  +Q   +    S   M   L  A +G   I++  
Sbjct: 173 LDLCYTEDSAADVDMNVVMTGKGELVEVQGTAEHRSFSRKEMDRLLDLAWKGISEIVDLQ 232

Query: 536 SK 537
            +
Sbjct: 233 KR 234



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 81/219 (36%), Gaps = 23/219 (10%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R ++G+ L   G T VLATV  +  +      Q    +T  Y     +  +       R 
Sbjct: 22  RYAEGSALIRMGFTHVLATVSLEEKVPPFLKDQGRGWVTAEYGMLPRSTHERSPREAAR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFS---KCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
            + +     I R+I RS+R + +      +  T +  +V+Q D  +    +     + AL
Sbjct: 81  GKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTAT-IDCDVIQADGGTRCASIGGAFVALAL 139

Query: 139 MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVL 186
             S L         P    +    V  ++G+  L+    ED      +++ ++G +  ++
Sbjct: 140 AFSNLKKVGVIAESPLVDYLAAVSVGIVDGEPCLDLCYTEDSAADVDMNVVMTG-KGELV 198

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V+  A     S   +   +         +++   +L +
Sbjct: 199 EVQGTAEHRSFSRKEMDRLLDLAWKGISEIVDLQKRLVQ 237


>gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 259

 Score =  146 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 96/257 (37%), Gaps = 26/257 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G T+ +   ++             G+   
Sbjct: 4   REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTDG----VPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  I 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVTYLAAAGKLSDPRPLSCAIAAVSVGVV----DGRIR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A      +    
Sbjct: 176 VDLPYEEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQ 235

Query: 536 SKVLSESRL-QLGEFTP 551
            + L+     +L E  P
Sbjct: 236 REALALPYPGELPEGAP 252



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 24/217 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+ T      +   + G     LT  Y     A           + R +
Sbjct: 28  GSVLIEFGHTKVMCTASVTDGVPRWRKGSGLGWLTAEYAMLPSAT-HTRSDRESVKGRLS 86

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I RS+R          N   V  +V+Q D        ++  A  AL     
Sbjct: 87  GRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQADGG--TRTAAITGAFVALADAVT 144

Query: 140 -------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVEL 190
                  LS   P    +    V  ++G+  ++ P  ++ +  +D+ V  T    L+   
Sbjct: 145 YLAAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDARAEVDMNVVATDTGTLVEVQ 204

Query: 191 EANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
              +        +   +      C  +  A  +   +
Sbjct: 205 GTGEGATFPRSTLDKLLDVALAACDKLFAAQREALAL 241


>gi|148553491|ref|YP_001261073.1| ribonuclease PH [Sphingomonas wittichii RW1]
 gi|166228323|sp|A5V3R9|RNPH_SPHWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148498681|gb|ABQ66935.1| RNAse PH [Sphingomonas wittichii RW1]
          Length = 238

 Score =  146 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 93/244 (38%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R IS + G      GS L   GDT+ +V  ++    +E+    L G  +
Sbjct: 1   MRPSGRAPDQMRAISIETGFTVHAEGSVLISFGDTRVLVTASV----EEKVPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+         + I  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +AL             A  PI+  VA I+ G+     +   +
Sbjct: 117 DVLQADGGTRTASISGGWVALRLAVDKLLASGAIAEDPITAQVAAISCGI----HEGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED   H D      D+G I   Q   +     E  ++  L+ A+ G   I    
Sbjct: 173 LDLDYIEDSNAHADANFVLLDNGNIAEAQATAEGATYDEEALLRLLRLARIGCGEIFAAQ 232

Query: 536 SKVL 539
            K  
Sbjct: 233 RKAT 236



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG     ++G+VL ++G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RAISIETGFTVH-AEGSVLISFGDTRVLVTASVEEKVPPFLRGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q++   +V+Q D       
Sbjct: 71  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDCDVLQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
            S+     AL            ++  P    V         G  VL+    ED  
Sbjct: 128 ASISGGWVALRLAVDKLLASGAIAEDPITAQVAAISCGIHEGTPVLDLDYIEDSN 182


>gi|293605635|ref|ZP_06688015.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292816015|gb|EFF75116.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 244

 Score =  146 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R  S + G  +   GS L   GDT  +   ++     E+    L G    
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASV----LEKVPPFLKGKGEG 64

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G  S R     RL  R++  V    A    TL +  +
Sbjct: 65  WVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCD 124

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       LM  G     PI   VA +++GLV+       + 
Sbjct: 125 VLQADGGTRCASITGAWVAAADAVALLMKRGDLAVNPIRDAVAAVSVGLVQ----GRSVL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T SG    +Q   +    +   +   L  A+ G   ++    
Sbjct: 181 DLDYQEDSACDADVNVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIASLVRAQR 240

Query: 537 KV 538
             
Sbjct: 241 AA 242



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 24/225 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP  LE G   R ++G+VL   G+T VL T      +     G+    +T  Y     A 
Sbjct: 19  RPFSLERG-FTRYAEGSVLVKAGDTHVLCTASVLEKVPPFLKGKGEGWVTAEYGMLPRAT 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
               G       + +     I R+I RS+R +F      E    +  +V+Q D       
Sbjct: 78  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQADGG--TRC 134

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A             L+  P    V    V  + G+ VL+    ED      +
Sbjct: 135 ASITGAWVAAADAVALLMKRGDLAVNPIRDAVAAVSVGLVQGRSVLDLDYQEDSACDADV 194

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++ ++G+   V +    E    +   +   ++        ++ A 
Sbjct: 195 NVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIASLVRAQ 239


>gi|225874384|ref|YP_002755843.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
 gi|225793778|gb|ACO33868.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
          Length = 246

 Score =  146 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 96/253 (37%), Gaps = 24/253 (9%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           +   +  R  GR  + +R +    G      GS L   G T+ +   T+    ++     
Sbjct: 1   MTEKEFFRASGRRPDEMRPVKLTAGYTSMPEGSVLIEVGHTRVLCAATV----EQGVPGW 56

Query: 366 LSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           +  + R      Y  LP AT       S  G    R     RL  R++  V+   A    
Sbjct: 57  MRNSGRGWVTAEYGMLPRATLTRTARESERGKVGGRTHEIQRLIGRSLRAVVDMQALGER 116

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDG 470
           T+ +  ++ ++DG +  A + G+  AL  A             P+ + VA  ++G+V   
Sbjct: 117 TVILDCDVLQADGGTRTAAITGACTALAIACQRLVKAGTLKASPLRQLVAATSVGIV--- 173

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +   L D++ +ED    +D  +  T+  G+  +Q   +        M+  +  A++G  
Sbjct: 174 -EGTTLLDLAYEEDSQAEVDMNLVMTEDGGLVEVQATAERQAFPRARMMEMMDYAEKGIR 232

Query: 530 HILNEMSKVLSES 542
            +L      +  +
Sbjct: 233 ELLALQRAAMESA 245



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 24/233 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+KL  G  +   +G+VL   G T VL     ++ +           +T  Y     A 
Sbjct: 18  RPVKLTAGYTSM-PEGSVLIEVGHTRVLCAATVEQGVPGWMRNSGRGWVTAEYGMLPRAT 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +       I R+I RS+R +       E  VI   +V+Q D       
Sbjct: 77  -LTRTARESERGKVGGRTHEIQRLIGRSLRAVVDMQALGERTVILDCDVLQADGG--TRT 133

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            ++  A  AL ++             P    V    V  + G  +L+   +ED Q  +D+
Sbjct: 134 AAITGACTALAIACQRLVKAGTLKASPLRQLVAATSVGIVEGTTLLDLAYEEDSQAEVDM 193

Query: 177 FVSGTQD-AVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            +  T+D  ++ V+  A         +++ + +     + ++       +   
Sbjct: 194 NLVMTEDGGLVEVQATAERQAFPRARMMEMMDYAEKGIRELLALQRAAMESAG 246


>gi|119715559|ref|YP_922524.1| ribonuclease PH [Nocardioides sp. JS614]
 gi|166228299|sp|A1SGA2|RNPH_NOCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119536220|gb|ABL80837.1| RNAse PH [Nocardioides sp. JS614]
          Length = 242

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R I+     L    GS L   G T+ +   +      E       G+  
Sbjct: 5   PREDGRADDELRPITITRHWLDHAAGSVLVEFGRTRVLCAAS----AAEGVPRWRKGSGL 60

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G    R     RL  R++  ++   A    T+++  
Sbjct: 61  GWVTAEYAMLPASTNTRSDRESVKGRIGGRTHEISRLIGRSLRAIIDYKALGENTIQLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL D            G P++  VA +++G++    D +  
Sbjct: 121 DVLQADGGTRTAAITGAYVALADAVEHLRSTGALTGEPLTGSVAAVSVGII----DGVPR 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  V  T SG
Sbjct: 177 LDLPYVEDVRAETDMNVVMTGSG 199



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 23/191 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ + T      + G+VL  +G T VL        +   + G     +T  Y     + 
Sbjct: 16  RPITI-TRHWLDHAAGSVLVEFGRTRVLCAASAAEGVPRWRKGSGLGWVTAEYAMLPAST 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                    +  R       ISR+I RS+R +        N  Q+  +V+Q D       
Sbjct: 75  NTRSDRESVK-GRIGGRTHEISRLIGRSLRAIIDYKALGENTIQLDCDVLQADGG--TRT 131

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            L+G P  G V    V  I+G   L+    ED   +  +
Sbjct: 132 AAITGAYVALADAVEHLRSTGALTGEPLTGSVAAVSVGIIDGVPRLDLPYVEDVRAETDM 191

Query: 175 DLFVSGTQDAV 185
           ++ ++G+   V
Sbjct: 192 NVVMTGSGKFV 202


>gi|285017590|ref|YP_003375301.1| ribonuclease ph protein [Xanthomonas albilineans GPE PC73]
 gi|283472808|emb|CBA15313.1| hypothetical ribonuclease ph protein [Xanthomonas albilineans]
          Length = 241

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 16/217 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR +E +R +  +    +   GS L   GDT+ +   ++    D +    L G    
Sbjct: 5   RPSGRTAEQLRPVRIERAFTRHAEGSVLVSFGDTRVLCNASV----DNRVPGFLRGKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R +   RL  RA+   + + A    T+ +  +
Sbjct: 61  WVTAEYGMLPRATHSRSEREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------PISKPVA-GIAMGLVKDGDDFIILSDISG 481
           + ++DG +  A + G+ +AL+DA         + KPV  G    +       + + D+  
Sbjct: 121 VLQADGGTRTAAITGAYVALVDAVNWLRQRGELKKPVVLGAVAAVSVGIYRGVPVLDLDY 180

Query: 482 DEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIM 517
            ED     D  V   D  G   +Q   +      + +
Sbjct: 181 AEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDEL 217



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+++E     R ++G+VL ++G+T VL     D  +     G+    +T  Y     A 
Sbjct: 15  RPVRIER-AFTRHAEGSVLVSFGDTRVLCNASVDNRVPGFLRGKGEGWVTAEYGMLPRAT 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  +     + I R+I R++R    +    E  +    +V+Q D       
Sbjct: 74  HSRSEREAAR-GKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADGG--TRT 130

Query: 129 VSMVAASAALMLS----------GLP-FEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL+ +            P   G V    V    G  VL+    ED      +
Sbjct: 131 AAITGAYVALVDAVNWLRQRGELKKPVVLGAVAAVSVGIYRGVPVLDLDYAEDSDCDTDM 190

Query: 175 DLFV 178
           ++ +
Sbjct: 191 NVVM 194


>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
          Length = 247

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 7/232 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R DGR    +R +   +G+  +  GS+   +G+T+ +     G  E    + 
Sbjct: 5   ELISDEGYRFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVL-AAIYGPHEASNNMR 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S     +      ++    ++ E  +     R+        ++     +         + 
Sbjct: 64  SRVCLDKCFINCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++  SDGS   A V  ++LAL+DAG+ +   V   +  L K+      L DI+  E+
Sbjct: 124 IYLQVLHSDGSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETS----LIDINHVEE 179

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
             G  +F  A       I   +++ +I       +V A+    +    +++ 
Sbjct: 180 LAGCAEFSAAIMPKLDQIIYSELNGRIHQDELGQLVDAVTNGCKDIFAVIDR 231



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 15/207 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERTYAVGKIPGGYLR 79
           Q+DG+     G T VLA +       +            +   + +  ++  +      +
Sbjct: 34  QADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCFINCEFSQAMFSSAE-----RK 88

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
           + SR       +S  I ++            +Q+ I +     + S +   + AA+ AL+
Sbjct: 89  KRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQVLHSDGSLYCACVNAATLALI 148

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVS--GTQDAVLMVELEANQLS 196
            +G+  +  V            +++   ++E  G  +   +     D ++  EL    + 
Sbjct: 149 DAGIAMKDYVCACSASLTKETSLIDINHVEELAGCAEFSAAIMPKLDQIIYSELNGR-IH 207

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAK 223
           +D +   +    N CK +   I +  +
Sbjct: 208 QDELGQLVDAVTNGCKDIFAVIDRFVR 234


>gi|34763588|ref|ZP_00144521.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886731|gb|EAA23871.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 434

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 113/307 (36%), Gaps = 31/307 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  +  R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRKFDEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVT----DKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +      G  S R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +A       L+D  +    P+   VA I++G +       ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISNVAAISVGKINSE----LMV 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G    +Q   +    +   +   L  A+      +    
Sbjct: 175 DLKYSEDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVK 594
           K++++    L  F        I      + I  G + +  +  + G ++   I+D  T +
Sbjct: 235 KIINQ--ENLKIFLATANKHKIDE---ISDIFSGIENVEILSIKDGIEIPEVIEDGKTFE 289

Query: 595 IASSSLA 601
             S   A
Sbjct: 290 DNSKKKA 296



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T  V D+      G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  IN + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLDEEILEENPLISNVAAISVGKINSELMVDLKYSEDFAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---------KMCAKEPIVIDSKDFSK 239
              +   +   +   +    N  K  IE   K+              K  I   S  FS 
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQENLKIFLATANKHKIDEISDIFSG 263

Query: 240 LEEEMSQMIKEDLRVSCFIPE 260
           +E      IK+ + +   I +
Sbjct: 264 IENVEILSIKDGIEIPEVIED 284


>gi|19705156|ref|NP_602651.1| ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713093|gb|AAL93950.1| Ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 434

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 114/309 (36%), Gaps = 30/309 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+    R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASV----SDKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +   A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +AL                P+   VA I++G +    D  ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLQEEILEENPLISNVAAISVGKI----DSNLMV 174

Query: 478 DISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V          +Q   +    +   +   L  A+     ++    
Sbjct: 175 DLKYSEDSAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVKI 595
           +++++    L  F        I  ++I + I  G + I  +  + G ++  + +DG    
Sbjct: 235 RIINQ--EDLKIFLATANKHKI--EEISD-IFSGIENIEILSIKDGIEIPEVIEDGETFE 289

Query: 596 ASSSLAEIE 604
            +S    +E
Sbjct: 290 VNSKKKAVE 298



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 20/234 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +     G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  I+   +++ +  ED    +D+  +   +D  + V+ 
Sbjct: 144 KLLQEEILEENPLISNVAAISVGKIDSNLMVDLKYSEDSAAEVDMNVIMNKKDEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
              +   +   +   +    N  K +IE   ++        I + + +  K+EE
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ-EDLKIFLATANKHKIEE 256


>gi|302381326|ref|YP_003817149.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
 gi|302191954|gb|ADK99525.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
          Length = 242

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 89/229 (38%), Gaps = 24/229 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  E +R ++ + G+ +   GS L   G T+ +V  ++    +E     + G   
Sbjct: 1   MRPSDRTPEQLRAVTLETGVNRYAEGSCLVSFGHTKVLVTASV----EENVPGWMRGKGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  + R     RL  R++  V+   A     + I  
Sbjct: 57  GWVTAEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVLIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       L   GV    PI   VA ++ G+  D      +
Sbjct: 117 DVIQADGGTRTASITGAWVAMATALNYLRAEGVMKVDPILDQVAAVSCGIFADTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQA 524
            D+  +ED     D     T SG I  +Q   +  G S        Q A
Sbjct: 173 LDLDYEEDSNAEADGNFVLTGSGTIVEIQATGEKRGFSRPEFDRLFQLA 221



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 26/200 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + LETG + R ++G+ L ++G T VL T   + ++     G+    +T  Y     A 
Sbjct: 12  RAVTLETG-VNRYAEGSCLVSFGHTKVLVTASVEENVPGWMRGKGAGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + T     I R+I RS+R +       E QV+   +V+Q D  + 
Sbjct: 71  ----HTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVLIDCDVIQADGGTR 126

Query: 126 PHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
              ++    + A  L+ L         P    V            VL+   +ED   +  
Sbjct: 127 TASITGAWVAMATALNYLRAEGVMKVDPILDQVAAVSCGIFADTPVLDLDYEEDSNAEAD 186

Query: 174 LDLFVSGTQDAVLMVELEAN 193
            +  ++G+   ++ ++    
Sbjct: 187 GNFVLTGS-GTIVEIQATGE 205


>gi|261365535|ref|ZP_05978418.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
 gi|288565953|gb|EFC87513.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
          Length = 246

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           RD++++RDI      L    GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RDADSLRDIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKGQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL           + +  PI +        +       + L D+  
Sbjct: 125 DGGTRTASITGAFVALQIAVNKLISDDLISENPIRE----AVAAVSAGVVGGVPLLDLDY 180

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  +  T SG I  +Q   +    S + +   +  A++G   +       L 
Sbjct: 181 PEDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELTAHQQNALK 240

Query: 541 ESR 543
            SR
Sbjct: 241 LSR 243



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 31/222 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           +DG+ L   G T V+ T   D ++     G+    +T  Y     +        +RRE  
Sbjct: 27  ADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGMLPASTA----SRMRREAA 82

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             + +     I R+I RS+R +       E Q++   +V+Q D        S+  A  AL
Sbjct: 83  AGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG--TRTASITGAFVAL 140

Query: 139 MLS-------GLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGTQDA 184
            ++        L  E P+  A      G     P LD D          +++ ++ +   
Sbjct: 141 QIAVNKLISDDLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGCDSDVNIVMTAS-GK 199

Query: 185 VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++  A     S D +   I         +        K+
Sbjct: 200 IIEIQGTAEGAPFSLDELGKLIALAQKGIAELTAHQQNALKL 241


>gi|33597539|ref|NP_885182.1| ribonuclease PH [Bordetella parapertussis 12822]
 gi|61216028|sp|Q7W6C1|RNPH_BORPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33573967|emb|CAE38285.1| ribonuclease PH [Bordetella parapertussis]
          Length = 250

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 91/244 (37%), Gaps = 24/244 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            VR  GR  + +R  S + G  +   GS L   G+T  +   ++     E+    L G  
Sbjct: 13  SVRPAGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASV----LEKVPPFLKGRG 68

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT          G  S R     RL  R++  V         TL + 
Sbjct: 69  EGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLD 128

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A       LM  G     PI   VA +++GLV    D   
Sbjct: 129 CDVLQADGGTRCASITGAWVAAADAVALLMQRGDLAHNPIRDAVAAVSVGLV----DGRA 184

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  V  T SG    +Q   +    +   +   L  A+ G   ++  
Sbjct: 185 VLDLDYQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRA 244

Query: 535 MSKV 538
             + 
Sbjct: 245 QREA 248



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 79/228 (34%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP  LE G   R ++G+VL   G T VL T      +     G+    +T  Y     A 
Sbjct: 25  RPFSLERG-FTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTAEYGMLPRAT 83

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
               G       + +     I R+I RS+R +F      E    +  +V+Q D       
Sbjct: 84  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQADGG--TRC 140

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A             L+  P    V    V  ++G+ VL+    ED      +
Sbjct: 141 ASITGAWVAAADAVALLMQRGDLAHNPIRDAVAAVSVGLVDGRAVLDLDYQEDSACAADV 200

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++G+   V +    E    +   +   +         ++ A  + 
Sbjct: 201 NVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREA 248


>gi|91205422|ref|YP_537777.1| ribonuclease PH [Rickettsia bellii RML369-C]
 gi|122425711|sp|Q1RIX6|RNPH_RICBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91068966|gb|ABE04688.1| Ribonuclease PH [Rickettsia bellii RML369-C]
          Length = 239

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   +  T         L    R
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTT----VPPFLRNQNR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T + ++     G  S R     RL  R +  ++         + I  
Sbjct: 57  GWITAEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   VA ++ G+ KD      +
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLINQVAAVSCGIYKDQP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 85/230 (36%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +  YD ++      Q+   +T  Y     + 
Sbjct: 12  RPISLELSPLI-NAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWITAEYSMLPGST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            +      +RE    + +     I R+I R++R +       E Q+ I+    + +    
Sbjct: 71  SQR----NKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVINADGGTR 126

Query: 128 VVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  +  AL L+        +    P    V          Q +L+    ED   +  
Sbjct: 127 TAAITGSYVALHLAIRSLMKKRILKVNPLINQVAAVSCGIYKDQPILDLDYLEDSDAEVD 186

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            +   +G  + +  ++  A +   SE+  L+ +         + +  +++
Sbjct: 187 SNFVFAGNGNLI-EIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQV 235


>gi|329947440|ref|ZP_08294644.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328525190|gb|EGF52241.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 264

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 28/253 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ +   +      E       G+   
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFT----EGVPRWRKGSGEG 63

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E S      G    R     RL  R++  ++  +A    T+ +  +
Sbjct: 64  WVTAEYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVSALGENTIALDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMD--------------AGVP-ISKPVAGIAMGLVKDGDDF 473
           + ++DG +  A + G+ +AL D              +G P +S  ++ I++G++    D 
Sbjct: 124 VLQADGGTRTAAITGAYVALADAVTWGTERGLIKARSGKPVLSDSLSAISVGII----DG 179

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +   D+  +ED     D  V  T  G    +Q   +      + +   L  A  G   + 
Sbjct: 180 VPCLDLPYEEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGSLLDLAATGNTRLA 239

Query: 533 NEMSKVLSESRLQ 545
               + L+    +
Sbjct: 240 ALQRRALAGPDDE 252



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 27/193 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL T+G T VL    +   +   + G     +T  Y     A  +  G    R  +
Sbjct: 30  AEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTAEYAMLPRAGSERSGRESVR-GK 88

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALML- 140
                  ISR+I RS+R +       E  +    +V+Q D        ++  A  AL   
Sbjct: 89  VGGRTHEISRLIGRSLRGIIDVSALGENTIALDCDVLQADGG--TRTAAITGAYVALADA 146

Query: 141 -------------SGLP-FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
                        SG P     +    V  I+G   L+   +ED   Q  +++  +G   
Sbjct: 147 VTWGTERGLIKARSGKPVLSDSLSAISVGIIDGVPCLDLPYEEDVRAQTDMNVVQTG-DG 205

Query: 184 AVLMVELEANQLS 196
             + V+  A    
Sbjct: 206 RFIEVQGTAEHAP 218


>gi|299822585|ref|ZP_07054471.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
 gi|299816114|gb|EFI83352.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
          Length = 248

 Score =  146 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 23/224 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR+   +R I      L    GS L   GDT+ I   ++    +E+    + G  +
Sbjct: 1   MRHDGRNKGELRKIELIKDYLIHPEGSVLISTGDTKVICSASI----EEKVPPFMRGEGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R +   RL  RA+  V+   A    T+ I  
Sbjct: 57  GWISAEYAMLPRATTTRNIRESSKGKVGGRTMEIQRLIGRALRAVVDLDALGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL             A  PI   +A  ++G++++      +
Sbjct: 117 DVIQADGGTRTASITGAFVALALAIEKLYQTVPLAKFPIKDFLAATSVGILENEG---AV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVM 519
            D++  ED    +D  +  T +G    +Q   +    SE  +  
Sbjct: 174 LDLNYIEDSAAEVDMNIVMTGAGQFVELQGTGEEATFSETDLQE 217



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 28/225 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL + G+T V+ +   +  +     G+    ++  Y     A           + +  
Sbjct: 26  GSVLISTGDTKVICSASIEEKVPPFMRGEGKGWISAEYAMLPRAT-TTRNIRESSKGKVG 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM---- 139
              + I R+I R++R +       E    +  +V+Q D        S+  A  AL     
Sbjct: 85  GRTMEIQRLIGRALRAVVDLDALGERTIWIDCDVIQADGG--TRTASITGAFVALALAIE 142

Query: 140 -------LSGLPFEGPVVGAQVDYINGQ-YVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                  L+  P +  +    V  +  +  VL+    ED   +  +++ ++G    V  +
Sbjct: 143 KLYQTVPLAKFPIKDFLAATSVGILENEGAVLDLNYIEDSAAEVDMNIVMTGAGQFV-EL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL--AKMCAKEP 229
           +    + +  E  + + I  G    + +     ++  A + AK  
Sbjct: 202 QGTGEEATFSETDLQELITLGKKGIQALNIMQQEILGAALTAKIK 246


>gi|237743440|ref|ZP_04573921.1| ribonuclease ph [Fusobacterium sp. 7_1]
 gi|229433219|gb|EEO43431.1| ribonuclease ph [Fusobacterium sp. 7_1]
          Length = 434

 Score =  146 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 112/310 (36%), Gaps = 30/310 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR+    R I     +     GS L   G+T+ I   ++     ++    L GT +
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVT----DKVPSFLRGTGK 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E +   A       R +   RL  RA+   +         + I  
Sbjct: 58  GWVTAEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G  +AL                P+   VA I++G V       ++
Sbjct: 118 DVIQADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISNVAAISVGKVNSE----LM 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V     G    +Q   +    +   +   L  A+     ++   
Sbjct: 174 VDLKYSEDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQ 233

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVK 594
            +++++    L  F        I      + I  G + I  +  + G ++  + +DG   
Sbjct: 234 DEIINQ--ENLKIFLATANKHKIDE---ISDIFSGIENIEILSIKDGIEIPEVIEDGKTF 288

Query: 595 IASSSLAEIE 604
             +S    +E
Sbjct: 289 EDNSKKKAVE 298



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T  V D+      G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  +N + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLKEEILEENPLISNVAAISVGKVNSELMVDLKYSEDFAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---------KMCAKEPIVIDSKDFSK 239
              +   +   +   +    N  K +I+   ++              K  I   S  FS 
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQENLKIFLATANKHKIDEISDIFSG 263

Query: 240 LEEEMSQMIKEDLRVSCFIPE 260
           +E      IK+ + +   I +
Sbjct: 264 IENIEILSIKDGIEIPEVIED 284


>gi|167626670|ref|YP_001677170.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043763|sp|B0U040|RNPH_FRAP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167596671|gb|ABZ86669.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 235

 Score =  146 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 26/240 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR+++ +R +       +   GS L   GDT+ +   ++              +  
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASV----VAGVPRFKKDSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +  T     T+++  
Sbjct: 57  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+SLA+ D                P+   VA I++G+  +     
Sbjct: 117 DVIQADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+  DED     D  V    + G+  +Q   +    SE      L  AK+G   I  
Sbjct: 174 -VLDLDYDEDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 28/228 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R LK+ T    + ++G+VL  +G+T VL T  V     +  +D     LT  Y     + 
Sbjct: 12  RTLKV-THNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I R++R     +K  +N  +V  +V+Q D       
Sbjct: 71  -HTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
            S+  AS A+  +               P    V    V   N + VL+   DED   + 
Sbjct: 128 ASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEPVLDLDYDEDSNAET 187

Query: 173 SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
            +++ ++ +   ++ ++   E    SE+     +       K + E+I
Sbjct: 188 DMNVVMN-SNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFESI 234


>gi|256026996|ref|ZP_05440830.1| ribonuclease PH [Fusobacterium sp. D11]
 gi|289764980|ref|ZP_06524358.1| ribonuclease ph [Fusobacterium sp. D11]
 gi|289716535|gb|EFD80547.1| ribonuclease ph [Fusobacterium sp. D11]
          Length = 428

 Score =  146 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 112/310 (36%), Gaps = 30/310 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR+    R I     +     GS L   G+T+ I   ++     ++    L GT +
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVT----DKVPSFLRGTGK 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E +   A       R +   RL  RA+   +         + I  
Sbjct: 58  GWVTAEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDC 117

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +   ++ G  +AL                P+   VA I++G V       ++
Sbjct: 118 DVIQADGGTRTTSITGGYIALALAIKKLLKEEILEENPLISNVAAISVGKVNSE----LM 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V     G    +Q   +    +   +   L  A+     ++   
Sbjct: 174 VDLKYSEDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQ 233

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVK 594
            +++++    L  F        I      + I  G + I  +  + G ++  + +DG   
Sbjct: 234 DEIINQ--ENLKIFLATANKHKIDE---ISDIFSGIENIEILSIKDGIEIPEVIEDGKTF 288

Query: 595 IASSSLAEIE 604
             +S    +E
Sbjct: 289 EDNSKKKAVE 298



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T  V D+      G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  +N + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLKEEILEENPLISNVAAISVGKVNSELMVDLKYSEDFAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---------KMCAKEPIVIDSKDFSK 239
              +   +   +   +    N  K +I+   ++              K  I   S  FS 
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQENLKIFLATANKHKIDEISDIFSG 263

Query: 240 LEEEMSQMIKEDLRVSCFIPE 260
           +E      IK+ + +   I +
Sbjct: 264 IENIEILSIKDGIEIPEVIED 284


>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
          Length = 240

 Score =  146 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 10/234 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            +M +  +R+DGR    +R I  Q G+++R  GS+    G  + IV V +     E Y  
Sbjct: 6   KLMREDGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYV----REAYPK 61

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                 R      YN    +  E  R G P RR +   ++   A+   +         + 
Sbjct: 62  HAQNIDRAIVKARYNMSGYSVEERKRPG-PDRRTMEISKVVSEALSSAIVLEKLPRAEID 120

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  ++ E+D  + +A++  SS+A+ DAGVP+   V G   G      D  I+ D+S DED
Sbjct: 121 VFIQVLEADAGTRIASLTASSVAVADAGVPMRDLVVGCTAGKA----DGKIVLDLSKDED 176

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + G  D  +A        + + +  G ++E     A          I       
Sbjct: 177 NFGQADIPMAILPRTGKVVLLQLD-GDVTEEEFNEATSMMMDAMPRISELQRNA 229



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 18/213 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQ--DFFPLTVNYQERTYAV 70
           RP+K++TG + R +DG+    +G   ++  V V +   K  Q  D   +   Y    Y+V
Sbjct: 24  RPIKIQTGVVER-ADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVKARYNMSGYSV 82

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
            +      R+   P    + IS+++  ++    +  K  + E  V I V++ D      +
Sbjct: 83  EE------RKRPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLEADAG--TRI 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
            S+ A+S A+  +G+P    VVG      +G+ VL+   DED   Q  + + +      V
Sbjct: 135 ASLTASSVAVADAGVPMRDLVVGCTAGKADGKIVLDLSKDEDNFGQADIPMAILPRTGKV 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++++L+ + ++E+   +A     +    + E  
Sbjct: 195 VLLQLDGD-VTEEEFNEATSMMMDAMPRISELQ 226


>gi|126172622|ref|YP_001048771.1| ribonuclease PH [Shewanella baltica OS155]
 gi|152998920|ref|YP_001364601.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160873506|ref|YP_001552822.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217971601|ref|YP_002356352.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304411675|ref|ZP_07393287.1| ribonuclease PH [Shewanella baltica OS183]
 gi|307306273|ref|ZP_07586018.1| ribonuclease PH [Shewanella baltica BA175]
 gi|166228316|sp|A3CZI9|RNPH_SHEB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228317|sp|A6WI99|RNPH_SHEB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043774|sp|A9KXZ7|RNPH_SHEB9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808600|sp|B8E4I8|RNPH_SHEB2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|125995827|gb|ABN59902.1| RNAse PH [Shewanella baltica OS155]
 gi|151363538|gb|ABS06538.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160859028|gb|ABX47562.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217496736|gb|ACK44929.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304349863|gb|EFM14269.1| ribonuclease PH [Shewanella baltica OS183]
 gi|306911146|gb|EFN41573.1| ribonuclease PH [Shewanella baltica BA175]
 gi|315265735|gb|ADT92588.1| ribonuclease PH [Shewanella baltica OS678]
          Length = 237

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R I+          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFT----EGVPRFLKGQGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  RA+   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           SD+   ED     D  V  T++G I  +Q   +    S   ++  L  AK     I++  
Sbjct: 173 SDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLALAKNSIREIVDVQ 232

Query: 536 SKVLS 540
              L+
Sbjct: 233 KAALN 237



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 24/199 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +GET VL T  +   +     GQ    +T  Y     + 
Sbjct: 12  RPITI-TRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  + +     I R+I R++R         E  ++   +V+Q D       
Sbjct: 71  HSRMDREAAR-GKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL+ +       G+    P +  +    V    G+ + +    ED   +  +
Sbjct: 128 ASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYIEDSAAETDM 187

Query: 175 DLFVSGTQDAVLMVELEAN 193
           ++ ++ T   ++ ++  A 
Sbjct: 188 NVVMTET-GKIIEIQGTAE 205


>gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
 gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
          Length = 270

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 22/245 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R IS + G+      S L   G T+ I  VT+   ED      +   +  
Sbjct: 12  RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTI--EEDVPRWMKVQRVEGG 69

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T +  R     G    R     RL  R++   +        T+ +  +
Sbjct: 70  WLTAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCD 129

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+S+AL             A  P+ + V+ +++G++    +   L 
Sbjct: 130 VLQADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGIL----EGEALL 185

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  +  TD G    +Q   +    + + M   L+  ++G   I     
Sbjct: 186 DLCYVEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQR 245

Query: 537 KVLSE 541
           +V++E
Sbjct: 246 QVIAE 250



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+  ETG IA  +  +VL T+G T V+  V  +  +        +   +    Y++   
Sbjct: 22  RPISFETG-IAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWLTAEYSMLPY 80

Query: 74  PGGYLRRE----SRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSPH 127
                +R      +       I R+I RS+R         +    V  +V+Q D      
Sbjct: 81  STLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVLQADGG--TR 138

Query: 128 VVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  AS AL +           +  P +  V    V  + G+ +L+    ED   +  
Sbjct: 139 TASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDLCYVEDKDAEVD 198

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++L ++  Q   + V+    +   + D +   +  G    + + E   ++   
Sbjct: 199 MNLVMT-DQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIAE 250


>gi|157827025|ref|YP_001496089.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
 gi|166228311|sp|A8GW25|RNPH_RICB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157802329|gb|ABV79052.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
          Length = 239

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   +  T         L    R
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTT----VPPFLRNQNR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T + ++     G  S R     RL  R +  ++         + I  
Sbjct: 57  GWITAEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   VA ++ G+ KD      +
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKERILKVNPLINQVAAVSCGIYKDQP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 85/230 (36%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +  YD ++      Q+   +T  Y     + 
Sbjct: 12  RPISLELSPLI-NAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWITAEYSMLPGST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            +      +RE    + +     I R+I R++R +       E Q+ I+    + +    
Sbjct: 71  SQR----NKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVINADGGTR 126

Query: 128 VVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  +  AL L+        +    P    V          Q +L+    ED   +  
Sbjct: 127 TAAITGSYVALHLAIRSLMKERILKVNPLINQVAAVSCGIYKDQPILDLDYLEDSDAEVD 186

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            +   +G  + +  ++  A +   SE+  L+ +         + +  +++
Sbjct: 187 SNFVFAGNGNLI-EIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQV 235


>gi|330466053|ref|YP_004403796.1| ribonuclease PH [Verrucosispora maris AB-18-032]
 gi|328809024|gb|AEB43196.1| ribonuclease PH [Verrucosispora maris AB-18-032]
          Length = 243

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 27/245 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G      GS L   G T+ +   ++     E       G+   
Sbjct: 3   RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVT----EGVPRWRRGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    ++ +  +
Sbjct: 59  WVTAEYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAAIDLKALGENSIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVP---ISKPVAGIAMGLVKDGDDFI 474
           + ++DG +  A + G+ +AL D            G P   + + VA I++G+V       
Sbjct: 119 VLQADGGTRTAAITGAYVALHDAVSWLAARKALTGTPEKVMHRSVAAISVGVVAGEPR-- 176

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
              D+  DED    +D  V  T +G    +Q   + G  + + +   L  A  G L +  
Sbjct: 177 --LDLCYDEDVAAEVDMNVVCTGAGDFVEVQGTGEAGVFARDQLDALLDLATVGCLDLAE 234

Query: 534 EMSKV 538
              K 
Sbjct: 235 AQRKA 239



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 26/216 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL T      +   + G     +T  Y     A          +  R  
Sbjct: 27  GSVLVEFGATRVLCTASVTEGVPRWRRGSGLGWVTAEYAMLPRATNTRSDRESVK-GRVG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I RS+R         E  ++   +V+Q D        ++  A  AL     
Sbjct: 86  GRTHEISRLIGRSLRAAIDLKALGENSIVLDCDVLQADGG--TRTAAITGAYVALHDAVS 143

Query: 139 ------MLSGLP---FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV- 185
                  L+G P       V    V  + G+  L+   DED   +  +++  +G  D V 
Sbjct: 144 WLAARKALTGTPEKVMHRSVAAISVGVVAGEPRLDLCYDEDVAAEVDMNVVCTGAGDFVE 203

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +    EA   + D +   +      C  + EA  K 
Sbjct: 204 VQGTGEAGVFARDQLDALLDLATVGCLDLAEAQRKA 239


>gi|326330800|ref|ZP_08197101.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325951330|gb|EGD43369.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 235

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 18/197 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R I      L    GS L   G T+ +   +      E       G+   
Sbjct: 4   RADGRADDELRPIKITRNWLDHAAGSVLIEFGKTRVLCAAS----ASEGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T E S      G    R     RL  R++  V+   A    T+ I  +
Sbjct: 60  WVTAEYAMLPASTHERSSRESVKGKIGGRTHEISRLVGRSLRAVIDYKALGENTINIDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGVP------ISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + ++DG +  A + G+ +AL DA         ++  VA I++G++    D +   D+  +
Sbjct: 120 VLQADGGTRTAAITGAYVALADAVASLGVSKALTGSVAAISVGII----DGVPRLDLPYE 175

Query: 483 EDHLGHMDFKVAGTDSG 499
           ED     D  +  T  G
Sbjct: 176 EDVRAETDMNIVMTGEG 192



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 20/213 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+VL  +G+T VL        +   + G     +T  Y     +  +       +  +
Sbjct: 26  AAGSVLIEFGKTRVLCAASASEGVPRWRKGSGLGWVTAEYAMLPASTHERSSRESVK-GK 84

Query: 84  PTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                  ISR++ RS+R +        N   +  +V+Q D        ++  A  AL  +
Sbjct: 85  IGGRTHEISRLVGRSLRAVIDYKALGENTINIDCDVLQADGG--TRTAAITGAYVALADA 142

Query: 142 ------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVELEA 192
                      G V    V  I+G   L+   +ED   +  +++ ++G +   + V+  A
Sbjct: 143 VASLGVSKALTGSVAAISVGIIDGVPRLDLPYEEDVRAETDMNIVMTG-EGKFVEVQGTA 201

Query: 193 NQLSED--VVLDAIIFGHNECKPVIEAISKLAK 223
             ++ D   +   +  G   C  + +       
Sbjct: 202 EGVAFDRAELDALLALGEKGCADLTKLQEAALA 234


>gi|256846413|ref|ZP_05551870.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
 gi|256718182|gb|EEU31738.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
          Length = 434

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 112/307 (36%), Gaps = 31/307 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVT----DKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +   A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +A       L+D  +    P+   VA I++G +       ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISNVAAISVGKINSE----LMV 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G    +Q   +    +   +   L  A+     ++    
Sbjct: 175 DLKYSEDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVK 594
           K++++    L  F        I      + I  G + +  +  + G ++   I+D  T +
Sbjct: 235 KIINQ--ENLKIFLATANKHKIDE---ISDIFSGIENVEILSIKDGIEIPEVIEDGKTFE 289

Query: 595 IASSSLA 601
             S   A
Sbjct: 290 DNSKKKA 296



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 92/261 (35%), Gaps = 28/261 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T  V D+      G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  IN + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLDEEILEENPLISNVAAISVGKINSELMVDLKYSEDFAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---------KMCAKEPIVIDSKDFSK 239
              +   +   +   +    N  K +IE   K+              K  I   S  FS 
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQENLKIFLATANKHKIDEISDIFSG 263

Query: 240 LEEEMSQMIKEDLRVSCFIPE 260
           +E      IK+ + +   I +
Sbjct: 264 IENVEILSIKDGIEIPEVIED 284


>gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102]
 gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102]
          Length = 242

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 16/235 (6%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++R+I      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 8   GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKEQGWVT 63

Query: 376 MHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ +
Sbjct: 64  AEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 432 SDGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +DG +  A++ G+ +A       L+  G+    P+      +       + L D+   ED
Sbjct: 124 ADGGTRTASITGAYVALQIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPED 183

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  +  T SG I  +Q   +    S   +   +  A +G   ++      
Sbjct: 184 SGCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQKAA 238



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           +DG+ L   G T V+ T   D ++     G++   +T  Y     +        +RRE  
Sbjct: 27  ADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYGMLPASTA----SRMRREAA 82

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             + +     I R+I RS+R +       E Q++   +V+Q D        S+  A  AL
Sbjct: 83  AGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG--TRTASITGAYVAL 140

Query: 139 MLS-------GLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGTQDA 184
            ++       GL  E P+  A      G     P LD D          +++ ++ +   
Sbjct: 141 QIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGCDSDVNIIMTAS-GK 199

Query: 185 VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++  A     S + +   I   H     +++   
Sbjct: 200 IIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQK 236


>gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 248

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 103/246 (41%), Gaps = 23/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR+S  +R I      L    GS L   G+T+ I   ++    + +    + G  R
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASV----ENKVPPFMRGEGR 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  
Sbjct: 57  GWISAEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++               P+   +A  ++G++++G     +
Sbjct: 117 DVIQADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDLLAATSVGVLEEGG---TV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D++  ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++   
Sbjct: 174 LDLNYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQ 233

Query: 536 SKVLSE 541
            + L E
Sbjct: 234 KETLGE 239



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 26  GSVLIASGNTKVICSASVENKVPPFMRGEGRGWISAEYAMLPRATN-TRNIRESSKGKVT 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALML--- 140
              + I R+I R++R +       E  +    +V+Q D        S+  A  A+++   
Sbjct: 85  GRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 142

Query: 141 ---SGLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
              + +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 143 KLDAEVPFTKFPVKDLLAATSVGVLEEGGTVLDLNYIEDSAAQVDMNIIMTGS-GAFVEL 201

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 202 QGTGEEATFSEAELAELIALGKKGIAELIEIQKE 235


>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
 gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
          Length = 245

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 35/245 (14%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD----- 364
              R+DGR    +R +  +VG++ R  GS+LF  G+T+ I  V  G RE   + D     
Sbjct: 8   TGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAV-YGPREVAAHPDYWLVR 66

Query: 365 ---------SLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
                     L G  R                +TG+  R     RR      + R+ +  
Sbjct: 67  LISKKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTEISLVIRQTMEA 126

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
            +         + I  ++ ++DG +  A +  ++LAL DAG+P+   V   +        
Sbjct: 127 SILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSA------- 179

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTD--SGITAMQMDMKIGGISEN-IMVMALQQAKRGR 528
                 D++  ED  G  D  V        +T +QMD K+   +   +M +A++  K   
Sbjct: 180 ------DLNYIEDSAGGPDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIA 233

Query: 529 LHILN 533
            +I  
Sbjct: 234 NYIRE 238



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 35/231 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQE-------- 65
           R LK E G +AR +DG+ L   G T V+A V   R +    D++ + +  ++        
Sbjct: 21  RQLKGEVGVVAR-ADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLISKKAKREGLRG 79

Query: 66  -----------RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQ 112
                      +   +     G  RR+ +       IS +I +++          +++  
Sbjct: 80  RSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQID 139

Query: 113 VIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
           + + V+Q D         + AA+ AL  +G+P    V     D       LN  +++  G
Sbjct: 140 IFVQVLQADGG--TRAACINAATLALADAGIPMRDIVTSCSAD-------LN-YIEDSAG 189

Query: 173 SLDLFVS--GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             D+ V      D V +++++A  L  D     +      CK +   I +L
Sbjct: 190 GPDVTVGFLTKMDKVTLLQMDAK-LPMDTFETVMDLAIEGCKAIANYIREL 239


>gi|153876824|ref|ZP_02003946.1| ribonuclease PH [Beggiatoa sp. PS]
 gi|152066712|gb|EDN66054.1| ribonuclease PH [Beggiatoa sp. PS]
          Length = 240

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I+          GS L   G T+ I  V++    DE+    +   + 
Sbjct: 1   MRPSGRAPNELRQINFTRHYTCHAEGSVLAEFGRTKVICNVSI----DERVPRFIKDKKS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   RL  R++  V+   A    T+ I  
Sbjct: 57  GWLTAEYGMLPRSTHSRMSREASRGRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL+D              PI   +A +++G+       I +
Sbjct: 117 DVIQADGGTRTAAITGSYIALVDAMQHLLKKRLIRKNPIHGAIAAVSVGIY----KGIPI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED     D  +   D+     +Q   +     ++ +   L  AK G   +L + 
Sbjct: 173 LDLDYNEDSDAETDMNIIMNDAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQ 232

Query: 536 SKVLSE 541
           + VL++
Sbjct: 233 NAVLND 238



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 39/221 (17%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAV-GKIPGGYL 78
           ++G+VLA +G T V+  V    S+ +    F        LT  Y     +   ++     
Sbjct: 24  AEGSVLAEFGRTKVICNV----SIDERVPRFIKDKKSGWLTAEYGMLPRSTHSRMSREAS 79

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASA 136
           R   R     + I R+I RS+R + +     E    +  +V+Q D        ++  +  
Sbjct: 80  R--GRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDCDVIQADGG--TRTAAITGSYI 135

Query: 137 AL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQ 182
           AL           ++   P  G +    V    G  +L+   +ED   +  +++ +    
Sbjct: 136 ALVDAMQHLLKKRLIRKNPIHGAIAAVSVGIYKGIPILDLDYNEDSDAETDMNIIM---N 192

Query: 183 DAVLMVE----LEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           DA   VE     E +   +D +   +         ++E  +
Sbjct: 193 DAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQN 233


>gi|307546985|ref|YP_003899464.1| ribonuclease PH [Halomonas elongata DSM 2581]
 gi|307219009|emb|CBV44279.1| ribonuclease PH [Halomonas elongata DSM 2581]
          Length = 245

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 24/247 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++  RDI       +   GS L   GDT+ +   ++    +      L G ++ 
Sbjct: 7   RPSGRATDQTRDIRLTRDYTRHAEGSVLVEFGDTRVLCNASV----EAGVPRWLRGKKQG 62

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R +   RL  R++   +       +T+ +  +
Sbjct: 63  WVTAEYGMLPRATHTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G  +AL+D            G P  + ++ +++G+ +       + 
Sbjct: 123 VIQADGGTRTAAITGGCVALVDAVRYLQREKLIKGDPFHQLISSVSVGIYQGTP----VV 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   ++G +  +Q   + G  S   +   L  A++    + +   
Sbjct: 179 DLDYPEDSRAGTDMNVVMAENGELIEVQGTAESGTYSRAELNAMLDLAEKAGGELFDHQR 238

Query: 537 KVLSESR 543
           + L   R
Sbjct: 239 EALGIRR 245



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R ++L T    R ++G+VL  +G+T VL     +  +     G+    +T  Y     A 
Sbjct: 17  RDIRL-TRDYTRHAEGSVLVEFGDTRVLCNASVEAGVPRWLRGKKQGWVTAEYGMLPRAT 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
               GG      +     + I R+I RS+R   +  K  +    V  +V+Q D       
Sbjct: 76  -HTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCDVIQADGG--TRT 132

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSL 174
            ++     AL           ++ G PF   +    V    G  V++    ED      +
Sbjct: 133 AAITGGCVALVDAVRYLQREKLIKGDPFHQLISSVSVGIYQGTPVVDLDYPEDSRAGTDM 192

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++ ++   + + +    E+   S   +   +         + +   + 
Sbjct: 193 NVVMAENGELIEVQGTAESGTYSRAELNAMLDLAEKAGGELFDHQREA 240


>gi|296328289|ref|ZP_06870818.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154593|gb|EFG95381.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 434

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 114/309 (36%), Gaps = 30/309 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+    R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASV----SDKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +   A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +AL                P+   VA I++G +       ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLQEEILEEDPLISNVAAISVGKINSN----LMV 174

Query: 478 DISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V          +Q   +    +   +   L  A+     ++    
Sbjct: 175 DLKYSEDFAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVKI 595
           +++++    L  F        I  ++I + I  G + I  +  + G ++  + +DG    
Sbjct: 235 RIINQ--EDLKIFLATANKHKI--EEISD-IFSGIENIEILSIKDGIEIPEVIEDGDTFE 289

Query: 596 ASSSLAEIE 604
           A+S    +E
Sbjct: 290 ANSKKKAVE 298



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 20/234 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +     G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  IN   +++ +  ED    +D+  +   +D  + V+ 
Sbjct: 144 KLLQEEILEEDPLISNVAAISVGKINSNLMVDLKYSEDFAAEVDMNVIMNKKDEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEE 242
              +   +   +   +    N  K +IE   ++        I + + +  K+EE
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ-EDLKIFLATANKHKIEE 256


>gi|237741270|ref|ZP_04571751.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
 gi|229430802|gb|EEO41014.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
          Length = 434

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 112/307 (36%), Gaps = 31/307 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVT----DKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +   A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +A       L+D  +    P+   VA I++G +       ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISNVAAISVGKINSE----LMV 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G    +Q   +    +   +   L  A+     ++    
Sbjct: 175 DLKYSEDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVK 594
           K++++    L  F        I      + I  G + +  +  + G ++   I+D  T +
Sbjct: 235 KIINQ--ENLKIFLATANKHKINE---ISDIFSGIENVEILSIKDGIEIPEVIEDGKTFE 289

Query: 595 IASSSLA 601
             S   A
Sbjct: 290 DNSKKKA 296



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 19/213 (8%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T  V D+      G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVTAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  IN + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLDEEILEENPLISNVAAISVGKINSELMVDLKYSEDFAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
              +   +   +   +    N  K +IE   K+
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRLIELQDKI 236


>gi|163797073|ref|ZP_02191028.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
 gi|159177589|gb|EDP62142.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
          Length = 243

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 23/202 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R++  + G  +   GS L   GDT  +   ++    +++    L G  + 
Sbjct: 8   RPSGRAVDALREVRLEPGFAKHAEGSCLVRFGDTHVLCTASV----EDRVPPWLKGGGKG 63

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   +      G  S R     RL  R++  V    A     +R+  +
Sbjct: 64  WVTAEYGMLPRSTHTRTDREAARGKQSGRTQEIQRLIGRSLRSVTDLVALGERQIRVDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + GS +AL               +P++  VA I+ G+ K       + 
Sbjct: 124 VIQADGGTRTAAITGSWVALHQAMSTLLRFGAVKSLPLTDKVAAISCGIYKGQP----VL 179

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   ED     D     T  G
Sbjct: 180 DLDYAEDSNCETDANFVLTGRG 201



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 26/197 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R ++LE G  A+ ++G+ L  +G+T VL T   +  +     G     +T  Y     + 
Sbjct: 18  REVRLEPG-FAKHAEGSCLVRFGDTHVLCTASVEDRVPPWLKGGGKGWVTAEYGMLPRST 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNETQVIINVMQHDLESSPH 127
                       + +     I R+I RS+R    L +   +   +V  +V+Q D      
Sbjct: 77  -HTRTDREAARGKQSGRTQEIQRLIGRSLRSVTDLVALGERQ-IRVDCDVIQADGG--TR 132

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  +  AL            +  LP    V         GQ VL+    ED   +  
Sbjct: 133 TAAITGSWVALHQAMSTLLRFGAVKSLPLTDKVAAISCGIYKGQPVLDLDYAEDSNCETD 192

Query: 174 LDLFVSGTQDAVLMVEL 190
            +  ++G +  ++ ++ 
Sbjct: 193 ANFVLTG-RGGIVEIQA 208


>gi|221640718|ref|YP_002526980.1| ribonuclease PH [Rhodobacter sphaeroides KD131]
 gi|254808599|sp|B9KPU4|RNPH_RHOSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221161499|gb|ACM02479.1| Ribonuclease PH [Rhodobacter sphaeroides KD131]
          Length = 237

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R +S +  +++   GS L   G+T  +   ++    +++    L  T  
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASI----EDKPPPFLKNTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +R     G  S R     RL  RA+   + ++A     + I  
Sbjct: 57  GWVTAEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G  +A       L+ AG+    PI   VA ++ G+         +
Sbjct: 117 DVLQADGGTRCASITGGWVALRLAVNKLLKAGIIVSDPIVDNVAAVSCGIYAGQP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T  S +  +QM  +    S + M   L  A+ G   ++   
Sbjct: 173 LDLDYAEDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQ 232

Query: 536 SKV 538
              
Sbjct: 233 KAA 235



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 30/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAV 70
           R + +E   + + ++G+ L   GET VL +   +           L   T  Y     A 
Sbjct: 12  RSVSIEPNVM-KHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I R++R    +    E Q++   +V+Q D    
Sbjct: 71  ----TSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAALML-------SGLPFEGPV----VGAQVDYINGQYVLNPRLDEDQ--- 171
               S+     AL L       +G+    P+             GQ VL+    ED    
Sbjct: 125 TRCASITGGWVALRLAVNKLLKAGIIVSDPIVDNVAAVSCGIYAGQPVLDLDYAEDSTAG 184

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  ++G    + + +  E    S D +   +         ++ A  
Sbjct: 185 TDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233


>gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
          Length = 245

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 26/226 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M D   R DGR ++ +R+I+ +    ++  GS+L   G T+ +   +   R         
Sbjct: 1   MTDDTPRHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNR----VPRWK 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
           +G+ +      Y  LP AT E        G    R     RL  R++  V+   A    T
Sbjct: 57  AGSGQGWVTAEYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKD 469
           + I  ++ ++DG +  A + G+ +AL D                P+   VA +++G+V  
Sbjct: 117 VVIDCDVLQADGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIV-- 174

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
             D   L D++  ED     D  V  T SG    +Q   +      
Sbjct: 175 --DGKPLLDLAYVEDVRAETDMNVVMTGSGSFVEVQGTAEGAPFDR 218



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTY 68
           R + +E    + Q++G+ L ++G T VL T      V       GQ +  +T  Y     
Sbjct: 17  REITIER-DWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGW--VTAEYAMLPR 73

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSP 126
           A  +       +  +       ISR+I RS+R +        N   +  +V+Q D     
Sbjct: 74  ATNERMDREAVK-GKVGGRTHEISRLIGRSLRAVVDMKALGENTVVIDCDVLQADGG--T 130

Query: 127 HVVSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
              ++  A  AL  +               P +  V    V  ++G+ +L+    ED   
Sbjct: 131 RTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVEDVRA 190

Query: 171 QGSLDLFVSGTQDAV 185
           +  +++ ++G+   V
Sbjct: 191 ETDMNVVMTGSGSFV 205


>gi|320534625|ref|ZP_08035070.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133145|gb|EFW25648.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 268

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 92/253 (36%), Gaps = 28/253 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ +   +      E       G+   
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVSFGRTRVLCAASFT----EGVPRWRKGSGEG 63

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E S      G    R     RL  R++  ++   A    T+ +  +
Sbjct: 64  WVTAEYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCD 123

Query: 429 ITESDGSSSMATVCGSSLALMDA--------------GVP-ISKPVAGIAMGLVKDGDDF 473
           + ++DG +  A + G+ +AL DA              G P +S  ++ I++G++    D 
Sbjct: 124 VLQADGGTRTAAITGAYVALADAVAWGTERGLIKARPGKPALSDSLSAISVGII----DG 179

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +   D+  +ED     D  V  T  G    +Q   +      + +   L  A  G   + 
Sbjct: 180 VPCLDLPYEEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAAVGNSRLA 239

Query: 533 NEMSKVLSESRLQ 545
               + L+    +
Sbjct: 240 ALQRQALAGPSGE 252



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 29/243 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL ++G T VL    +   +   + G     +T  Y     A  +  G    R  +
Sbjct: 30  AEGSVLVSFGRTRVLCAASFTEGVPRWRKGSGEGWVTAEYAMLPRAGSERSGRESVR-GK 88

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
                  ISR+I RS+R +       E  +    +V+Q D        ++  A  AL  +
Sbjct: 89  VGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQADGG--TRTAAITGAYVALADA 146

Query: 142 --------------GLP-FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQD 183
                         G P     +    V  I+G   L+   +ED   Q  +++  +G   
Sbjct: 147 VAWGTERGLIKARPGKPALSDSLSAISVGIIDGVPCLDLPYEEDVRAQTDMNVVQTG-DG 205

Query: 184 AVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
             + V+  A     D   + + +         +     +     + EP  + S   S   
Sbjct: 206 RFIEVQGTAEHAPFDRSELGELLDLAAVGNSRLAALQRQALAGPSGEPFTVSSPQSSSQP 265

Query: 242 EEM 244
            E+
Sbjct: 266 AEV 268


>gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10]
 gi|254808583|sp|B8I1A8|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10]
          Length = 240

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +      ++   GS L   GDT+ I   ++    +E+       +   
Sbjct: 3   RHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASV----EERIPPFKKDSGEG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPS----RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   ++          R     RL  R++  ++        T+ I  +
Sbjct: 59  WVTAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ GS +AL+DA            +P++  VA  ++G+V   +    L 
Sbjct: 119 VIQADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTVAATSVGIVNGEE----LL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  TD G    +Q   +    S+  +   L  A+ G   ++   +
Sbjct: 175 DLCYIEDSNAEVDMNVIKTDKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQN 234

Query: 537 KV 538
           +V
Sbjct: 235 EV 236



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 87/220 (39%), Gaps = 29/220 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTYAV-GKIPGGYL 78
           + ++G+VL   G+T V+ T   +  +       G+ +     +   R  AV  +     L
Sbjct: 23  KHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWVTAEYSMLPRATAVRNQRDISKL 82

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASA 136
           +   R +E    I R+I RS+R +       E    +  +V+Q D        S+  +  
Sbjct: 83  KLNGRSSE----IQRLIGRSLRTIVDLKLLGERTITIDCDVIQADGG--TRTASITGSYV 136

Query: 137 AL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL-FVSGTQD 183
           AL           ++S +P  G V    V  +NG+ +L+    ++    +D+  +   + 
Sbjct: 137 ALVDACRTLVKKGLISKMPVTGTVAATSVGIVNGEELLDLCYIEDSNAEVDMNVIKTDKG 196

Query: 184 AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
             + ++    +   S+  +   +    +    +I+A +++
Sbjct: 197 EFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEV 236


>gi|210632429|ref|ZP_03297357.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
 gi|210159524|gb|EEA90495.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
          Length = 244

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 22/238 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R ++    +++   GS L   GDT+ +   T+    +E        +++     
Sbjct: 12  RAADAMRPVNLTRDVMKNALGSCLVEFGDTKVLCAATI----EEGVPGWRKASRQGWVTA 67

Query: 377 HYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
            Y  LP +T   +R    +R  R +   RL  R++  V+   A   +T+ +  ++ ++DG
Sbjct: 68  EYAMLPASTNRRTRRETSNRKGRSMEIERLIGRSLRTVVNMKALGEHTVTVDCDVIQADG 127

Query: 435 SSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  A++ G+ +AL D           + +P++  VA ++MGLV    D   L D+   E
Sbjct: 128 GTRTASITGAWVALHDALMAWVEAGKISRLPLTGQVAAVSMGLV----DGCELLDLDYAE 183

Query: 484 DHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           D    +D  +  TD+G I  +Q   +        +   L   + G   +++  ++V +
Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 30/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ L T  + + + G+ L  +G+T VL     +  +   +       +T  Y     + 
Sbjct: 18  RPVNL-TRDVMKNALGSCLVEFGDTKVLCAATIEEGVPGWRKASRQGWVTAEYAMLPAST 76

Query: 71  GKIPGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
            +      RRE+   +   + I R+I RS+R + +     E    V  +V+Q D      
Sbjct: 77  NR----RTRRETSNRKGRSMEIERLIGRSLRTVVNMKALGEHTVTVDCDVIQADGG--TR 130

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL            +S LP  G V    +  ++G  +L+    ED   +  
Sbjct: 131 TASITGAWVALHDALMAWVEAGKISRLPLTGQVAAVSMGLVDGCELLDLDYAEDSHAEVD 190

Query: 174 LDLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAK 223
           ++L  +     ++ ++    Q   D   +   +  G    K +I+  +++  
Sbjct: 191 MNLVAT-DAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241


>gi|152967706|ref|YP_001363490.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
 gi|151362223|gb|ABS05226.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
          Length = 248

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ +   +      E       G+ + 
Sbjct: 10  RADGRAVDELRPVTITRNWLDHAEGSVLVEFGRTRVLCAASFT----EGVPRWRKGSGQG 65

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++  V+        T+ +  +
Sbjct: 66  WVTAEYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVVDTKQLGENTIVLDCD 125

Query: 429 ITESDGSSSMATVCGSSLALMD-------AGV------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A V G+ +AL D        G+      P++  V+ I++G+V    D + 
Sbjct: 126 VLQADGGTRTAAVTGAYVALADAISWARGQGIVKASRQPLTGSVSAISVGVV----DGVP 181

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGR 528
           + D+   ED     D  V  T  G    +Q   +        +   L  A  G 
Sbjct: 182 VLDLPYVEDVRAETDMNVVVTGDGRFVEVQGTAEGTPFDRAELDALLDLAVGGC 235



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 25/191 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL    +   +   + G     +T  Y     A     G     + +
Sbjct: 32  AEGSVLVEFGRTRVLCAASFTEGVPRWRKGSGQGWVTAEYAMLPRATN-TRGDRESVKGK 90

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM-- 139
                  ISR+I RS+R +       E  ++   +V+Q D        ++  A  AL   
Sbjct: 91  IGGRTHEISRLIGRSLRAVVDTKQLGENTIVLDCDVLQADGG--TRTAAVTGAYVALADA 148

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                       S  P  G V    V  ++G  VL+    ED   +  +++ V+G     
Sbjct: 149 ISWARGQGIVKASRQPLTGSVSAISVGVVDGVPVLDLPYVEDVRAETDMNVVVTG-DGRF 207

Query: 186 LMVELEANQLS 196
           + V+  A    
Sbjct: 208 VEVQGTAEGTP 218


>gi|255029953|ref|ZP_05301904.1| ribonuclease PH [Listeria monocytogenes LO28]
          Length = 244

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 23/242 (9%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR+S  +R+I      L    GS L   G+T+ I   ++ T+        + G  R    
Sbjct: 1   GRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGRGWIS 56

Query: 376 MHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y+ LP AT       S  G  + R +   RL  RA+  V+   A    T+ +  ++ +
Sbjct: 57  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 116

Query: 432 SDGSSSMATVCGSSLAL------MDAGV-----PISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A++ G+ +A+      +D  V     P+   +A  ++G++++G     + D++
Sbjct: 117 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGG---TVLDLN 173

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
             ED    +D  +  T SG    +Q   +    SE  +   +   K+G   ++    + L
Sbjct: 174 YVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETL 233

Query: 540 SE 541
            +
Sbjct: 234 GD 235



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 22  GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 80

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 81  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 138

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 139 KLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 197

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 198 QGTGEEATFSETELAELIALGKKGISELIEIQKE 231


>gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
 gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
          Length = 242

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 16/235 (6%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++++R+I      L    GS L   G+T+ I   ++    DE     L G ++    
Sbjct: 8   GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKEQGWVT 63

Query: 376 MHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ +
Sbjct: 64  AEYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 432 SDGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +DG +  A++ G+ +A       L+  G+    P+      +       + L D+   ED
Sbjct: 124 ADGGTRTASITGAYVALQIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPED 183

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  +  T SG I  +Q   +    S   +   +  A +G   ++      
Sbjct: 184 SGCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAA 238



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 31/217 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           +DG+ L   G T V+ T   D ++     G++   +T  Y     +        +RRE  
Sbjct: 27  ADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYGMLPASTA----SRMRREAA 82

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             + +     I R+I RS+R +       E Q++   +V+Q D        S+  A  AL
Sbjct: 83  AGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG--TRTASITGAYVAL 140

Query: 139 MLS-------GLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSGTQDA 184
            ++       GL  E P+  A      G     P LD D          +++ ++ +   
Sbjct: 141 QIAVDKLLSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGCDSDVNIIMTAS-GK 199

Query: 185 VLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           ++ ++  A     S + +   I   H     +++   
Sbjct: 200 IIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 236


>gi|153006268|ref|YP_001380593.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
 gi|166228263|sp|A7HFW3|RNPH_ANADF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152029841|gb|ABS27609.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
          Length = 238

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR    +R++  + G+ +   GS L   GDT  +   ++    DE+    + GT  
Sbjct: 1   MRTNGRGPRDLRNVVLEPGVSKHAEGSCLARFGDTHVLCTASV----DEKVPPHVYGTGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T E        G    R +   RL  RA+   +   A    T+ +  
Sbjct: 57  GWVTAEYGMLPRSTHERMAREAARGKQGGRTLEIQRLIGRALRAAVDLRALGTRTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL             +  P+++ VA +++GLV    +  + 
Sbjct: 117 DVIQADGGTRTAAITGGYVALALALRGLQQRKTLSRNPLARSVAAVSVGLV----EGEVC 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T  G +  +Q   +      + +   +  A      +    
Sbjct: 173 VDLDYGEDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRSDLDRMVDAALEAIGRLKERQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 EQA 235



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 81/230 (35%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + LE G +++ ++G+ LA +G+T VL T   D  +     G     +T  Y     + 
Sbjct: 12  RNVVLEPG-VSKHAEGSCLARFGDTHVLCTASVDEKVPPHVYGTGAGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
            +       R  +     + I R+I R++R      +   +    +  +V+Q D      
Sbjct: 71  HERMAREAAR-GKQGGRTLEIQRLIGRALRAAVDLRALGTRT-VTLDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++     AL            LS  P    V    V  + G+  ++    ED   +  
Sbjct: 127 TAAITGGYVALALALRGLQQRKTLSRNPLARSVAAVSVGLVEGEVCVDLDYGEDSTAEVD 186

Query: 174 LDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++  +G   A++ V+   E        +   +         + E   + 
Sbjct: 187 MNVVATG-DGALVEVQGTAEGKPFPRSDLDRMVDAALEAIGRLKERQEQA 235


>gi|77165901|ref|YP_344426.1| ribonuclease PH [Nitrosococcus oceani ATCC 19707]
 gi|123593634|sp|Q3J8F0|RNPH_NITOC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76884215|gb|ABA58896.1| RNAse PH [Nitrosococcus oceani ATCC 19707]
          Length = 239

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR    +R I       +   GS L   G+T+ I   ++    +++    L GT R
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTRYAEGSVLVEFGNTRVICNASV----EDRIPRFLKGTGR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G    R +   R   RA+  V+   A    T+ +  
Sbjct: 57  GWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL+D              PI   +A I++G+     +   +
Sbjct: 117 DVIQADGGTRTAAITGSYVALVDAINNRLKKRIITHSPIHGQLASISVGIY----EGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   ++G    +Q   +      N +   L  AK G   +L + 
Sbjct: 173 LDLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQ 232

Query: 536 SKVLSE 541
           ++VL++
Sbjct: 233 TEVLAK 238



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+   T    R ++G+VL  +G T V+    V DR  +   G     +T  Y     + 
Sbjct: 12  RPIHF-TRHYTRYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G    + R     + I R I R++R +       E  V    +V+Q D       
Sbjct: 71  -HNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  +  AL+           ++  P  G +    V    G  VL+    ED   +  +
Sbjct: 128 AAITGSYVALVDAINNRLKKRIITHSPIHGQLASISVGIYEGTPVLDLDYREDSTAETDM 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++    A + ++   E +    + +   +    +    ++   +++   
Sbjct: 188 NVVMN-EAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQTEVLAK 238


>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040307|gb|ACT57103.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+ GR    +R+IS    + +   GS L   GDT  +   TL    +E+    +  T+ 
Sbjct: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +TG   +     G    R     R+  RA+  V+  +A     + I  
Sbjct: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPI-------------SKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL D    +                VA I+ G++       
Sbjct: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED    +D     TDSG I  +Q   +    S++     L  AK     ++ 
Sbjct: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232

Query: 534 EMSKVLS 540
               V+S
Sbjct: 233 LQKDVIS 239



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 34/232 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R + L T R+++ ++G+ L  +G+T +L T   +  +           +T  Y     + 
Sbjct: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
           G      ++RE    R       I RMI R++R +         Q+I   +V+Q D    
Sbjct: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-- 124

Query: 126 PHVVSMVAASAALM--------------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               ++  A  AL               LS +  +G V       + G  +++    ED 
Sbjct: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183

Query: 172 G-SLDLFVSGTQDA-VLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
              +D     T    ++ V+  A + +  +D     +    +    +I+   
Sbjct: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235


>gi|294784524|ref|ZP_06749813.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
 gi|294487740|gb|EFG35099.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
          Length = 434

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 112/307 (36%), Gaps = 31/307 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R I     +     GS L   G+T+ I   ++     ++    L GT + 
Sbjct: 3   REDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVT----DKVPSFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E +      G  S R +   RL  RA+   +         + I  +
Sbjct: 59  WITAEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +   ++ G  +A       L+D  +    P+   VA I++G +       ++ 
Sbjct: 119 VIQADGGTRTTSITGGYIALALAIKKLLDEEILEENPLISNVAAISVGKINSE----LMV 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G    +Q   +    +   +   L  A+      +    
Sbjct: 175 DLKYSEDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQD 234

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVK 594
           K++++    L  F        I      + I  G + +  +  + G ++   I+D  T +
Sbjct: 235 KIINQ--ENLKIFLATANKHKIDE---ISDIFSGIENVEILSIKDGIEIPEVIEDGKTFE 289

Query: 595 IASSSLA 601
             S   A
Sbjct: 290 DNSKKKA 296



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T  V D+      G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWITAEYSMLPRATNERNPREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQADGGTRTTSITGGYIALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVEL 190
            L         P    V    V  IN + +++ +  ED    +D+  +   +   + V+ 
Sbjct: 144 KLLDEEILEENPLISNVAAISVGKINSELMVDLKYSEDFAAEVDMNVIMNKKGEFIEVQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLA---------KMCAKEPIVIDSKDFSK 239
              +   +   +   +    N  K  IE   K+              K  I   S  FS 
Sbjct: 204 TGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQENLKIFLATANKHKIDEISDIFSG 263

Query: 240 LEEEMSQMIKEDLRVSCFIPE 260
           +E      IK+ + +   I +
Sbjct: 264 IENVEILSIKDGIEIPEVIED 284


>gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
 gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
          Length = 243

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R IS Q    +   GS L   GDTQ +  V++           L  T + 
Sbjct: 5   RPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPG----VPKFLQFTGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   L        T+ + +++ 
Sbjct: 61  WLTAEYRMLPGATPQRQERELMKLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL D              PI   VA +++GL+ +G+ F    D+
Sbjct: 121 QADAGTRTTSITGGFVALADALDKLVKNGELEQSPIVSQVAAVSVGLL-EGEPF---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   ++  I  MQ   + G  S   +   L  A++G   +L    + 
Sbjct: 177 NYPEDVAAEVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQRQA 236



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 34/232 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+  +     + + G+VLA  G+T VL TV    S++ G   F        LT  Y+  
Sbjct: 15  RPISFQR-EFTKFATGSVLARSGDTQVLCTV----SIQPGVPKFLQFTGQGWLTAEYRML 69

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
               G  P    R   + +     I R+I RS+R         E  +I   +V+Q D   
Sbjct: 70  P---GATPQRQERELMKLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVLQADAG- 125

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QG 172
                S+     AL            L   P    V    V  + G+  L+    ED   
Sbjct: 126 -TRTTSITGGFVALADALDKLVKNGELEQSPIVSQVAAVSVGLLEGEPFLDLNYPEDVAA 184

Query: 173 SLDLFVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            +D  V   ++ +++ ++  A +   S   +   +       K ++E   + 
Sbjct: 185 EVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQRQA 236


>gi|332529685|ref|ZP_08405639.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
 gi|332040706|gb|EGI77078.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 28/246 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R ++ +R +           GS L   G T+ +   ++    +E+      G+   
Sbjct: 14  RADQRAADQLRAVRITRHYTVHAEGSVLIEFGRTRVLCTASV----EERVPPHKKGSGEG 69

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  + R     RL  R++  V    A    T+ +  +
Sbjct: 70  WVTAEYGMLPRSTHTRSDREAARGKQNGRTQEIQRLIGRSLRAVFDLKALGERTITLDCD 129

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +A  D              PI  PVA +++G+V    +   L 
Sbjct: 130 VLQADGGTRTAAITGAWVAAQDAVNTLIAQGKLTTSPIIAPVAAVSVGIV----EGQALL 185

Query: 478 DISGDEDHLGHMDFKVAGT-----DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           D+   ED     D  V  T     +     +Q   +    S   M   L  A++G   ++
Sbjct: 186 DLEYTEDSACDTDMNVVMTVNAAGEGHYIEVQGTAEGAAFSRKEMDALLALAEKGIHELV 245

Query: 533 NEMSKV 538
               + 
Sbjct: 246 ALQRQA 251



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 27/222 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL T   +  +     G     +T  Y     +             +
Sbjct: 36  AEGSVLIEFGRTRVLCTASVEERVPPHKKGSGEGWVTAEYGMLPRST-HTRSDREAARGK 94

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM-- 139
                  I R+I RS+R +F      E  +    +V+Q D        ++  A  A    
Sbjct: 95  QNGRTQEIQRLIGRSLRAVFDLKALGERTITLDCDVLQADGG--TRTAAITGAWVAAQDA 152

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFV---SGTQDA 184
                    L+  P   PV    V  + GQ +L+    ED      +++ +   +  +  
Sbjct: 153 VNTLIAQGKLTTSPIIAPVAAVSVGIVEGQALLDLEYTEDSACDTDMNVVMTVNAAGEGH 212

Query: 185 VLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            + V+  A     S   +   +         ++    +    
Sbjct: 213 YIEVQGTAEGAAFSRKEMDALLALAEKGIHELVALQRQALAA 254


>gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|61216065|sp|Q8G7I0|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 248

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 8   IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG----VPRWRKDSGL 63

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 64  GWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDC 123

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL+D          +      +   V+ +++G++    +  
Sbjct: 124 DVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVI----NGT 179

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 180 PMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 239

Query: 534 EMSKVLS 540
                LS
Sbjct: 240 AQRAALS 246



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 33  GSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 91

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL     
Sbjct: 92  GRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGG--TRTASVTGAYVALVDAVN 149

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LM 187
                      S +  +  V    V  ING  +L+ P +++ Q   D+ V+ T     + 
Sbjct: 150 WAEKHRHIKSASRV-LKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIE 208

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 209 IQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQ 241


>gi|299144136|ref|ZP_07037216.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518621|gb|EFI42360.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 438

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 105/282 (37%), Gaps = 27/282 (9%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           D R  + +R+I  ++       GS L   G+T+ I    +    +++    L G      
Sbjct: 3   DNRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAMI----EDKVPFFLKGKNSGWL 58

Query: 375 MMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              Y+ LP +T          G    R     RL  R++   +  +     T+ I  ++ 
Sbjct: 59  SCEYSMLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVI 118

Query: 431 ESDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILSDI 479
            +DG +   ++ GS +AL       +  G+    PI   VA I++G+V++      L D+
Sbjct: 119 SADGGTRTTSINGSFIALSLAVKNAIRQGIILENPIKNKVAAISVGIVENEK----LLDL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMAL---QQAKRGRLHILNEM 535
           + DED    +D  V   D+  I  +Q   +    S   +   +   + A     +I N++
Sbjct: 175 NYDEDSNAQVDLNVVMNDNKEIIEIQGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKV 234

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
                +  L         EI  I  D    +I      +  I
Sbjct: 235 LLDKEKIVLSSDNEHKITEIKEILKDLPVEIISKKDVNLSNI 276



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 28/244 (11%)

Query: 28  DGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+VL   G T V+ T + +  +     G++   L+  Y     +        + R  + 
Sbjct: 24  DGSVLIKCGNTKVICTAMIEDKVPFFLKGKNSGWLSCEYSMLPGSTSVRKVRDISR-GKL 82

Query: 85  TENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 I R+I RS+R         E    +  +V+  D        S+  +  AL L+ 
Sbjct: 83  DGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVISADGG--TRTTSINGSFIALSLAV 140

Query: 142 ------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
                 G+    P +  V    V  +  + +L+   DED   Q  L++ ++  ++ ++ +
Sbjct: 141 KNAIRQGIILENPIKNKVAAISVGIVENEKLLDLNYDEDSNAQVDLNVVMNDNKE-IIEI 199

Query: 189 EL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEEMSQ 246
           +   E    S   + + I         +    +K+  +  KE IV+ S +  K+ E + +
Sbjct: 200 QGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKV--LLDKEKIVLSSDNEHKITE-IKE 256

Query: 247 MIKE 250
           ++K+
Sbjct: 257 ILKD 260


>gi|255066782|ref|ZP_05318637.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
 gi|255048857|gb|EET44321.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
          Length = 241

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 24/240 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L    GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASI----DENVPPFLRGKGQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  ++         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL           + +  PI +        +     + + L D+  
Sbjct: 125 DGGTRTASITGAFVALQIAVNKLLSDDLISENPIRE----AVAAVSAGVVNGVPLLDLDY 180

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  +  T SG I  +Q   +    S +     +  A++G   +       LS
Sbjct: 181 PEDSGCDSDVNIVMTASGKIIEIQGTAEGAPFSLDEFGKLIALAQKGIAELTAHQQAALS 240



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G+    +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            +S  P    V       +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVNKLLSDDLISENPIREAVAAVSAGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D     I         +     
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEGAPFSLDEFGKLIALAQKGIAELTAHQQ 236


>gi|332970986|gb|EGK09959.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330]
          Length = 242

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 24/242 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R+I      L    GS L   G+T+ I   T+    DE     L G  +     
Sbjct: 8   RAANELREIRITPNFLPHADGSVLIECGNTKVICTATI----DENVPPFLRGKNQGWVTA 63

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    +     G  S R     RL  R++   +         + I  ++ ++
Sbjct: 64  EYGMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQA 123

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL                P+   VA I++G+V      + L D+  
Sbjct: 124 DGGTRTASITGAFVALKIAVQKMLNDGRLTDTPLMGSVAAISVGVV----GGVPLLDLDY 179

Query: 482 DEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  +   +   I  +Q   +      + +   +   ++G   +     K + 
Sbjct: 180 PEDSGCDSDVNLVMLNAEKIIEIQGTAEGAAFGLDELQQLIALGQKGIRELTEWQEKAVQ 239

Query: 541 ES 542
            +
Sbjct: 240 AA 241



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 86/236 (36%), Gaps = 32/236 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T      +DG+VL   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 14  REIRI-TPNFLPHADGSVLIECGNTKVICTATIDENVPPFLRGKNQGWVTAEYGMLPAST 72

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    + +     I R+I RS+R         E Q++   +V+Q D    
Sbjct: 73  ----QSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGG-- 126

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL ++             P  G V    V  + G  +L+    ED    
Sbjct: 127 TRTASITGAFVALKIAVQKMLNDGRLTDTPLMGSVAAISVGVVGGVPLLDLDYPEDSGCD 186

Query: 172 GSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
             ++L +    + ++ ++  A       D +   I  G    + + E   K  +  
Sbjct: 187 SDVNLVML-NAEKIIEIQGTAEGAAFGLDELQQLIALGQKGIRELTEWQEKAVQAA 241


>gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152]
 gi|61215825|sp|Q5Z0V1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152]
          Length = 257

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 25/251 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R++    G      GS L   G T+ +   ++         DS  G  
Sbjct: 2   SRRADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLG-- 59

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G    R     RL  R++   +   A    T+ I 
Sbjct: 60  --WLTAEYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              PIS  +A +++G+V    D  
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTWLGAAGALADPQPISCAIAAVSVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +  D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A  G   +  
Sbjct: 174 VRLDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFA 233

Query: 534 EMSKVLSESRL 544
              + L+    
Sbjct: 234 VQKEALALPYP 244



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 30/234 (12%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G+T V+ T  V +      +D     LT  Y     A      G    + R  
Sbjct: 28  GSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGWLTAEYAMLPAAT-HTRSGRESVKGRVG 86

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDL-----------ESSPHVVSMV 132
                ISR++ RS+R          N   +  +V+Q D             +    V+ +
Sbjct: 87  GRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTWL 146

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVELE 191
            A+ AL     P    +    V  ++G+  L+ P  ++ +  +D+ V  T    L+    
Sbjct: 147 GAAGALADPQ-PISCAIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDTGTLVEIQG 205

Query: 192 ANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
             +       + D +LDA + G   C+ +     +   +    P V+       
Sbjct: 206 TGEGATFPRSTLDKLLDAALAG---CEQLFAVQKE--ALALPYPGVLPEPAEPA 254


>gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1]
 gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
          Length = 262

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 95/249 (38%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R++    G      GS L   G+T+ +   ++    ++       G+   
Sbjct: 4   REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASV----EDGVPRWRQGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL+DA              PIS  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A  G   +    
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQ 235

Query: 536 SKVLSESRL 544
              L     
Sbjct: 236 KAALELPYP 244



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 85/232 (36%), Gaps = 28/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +K+  G     + G+VL  +G T V+ T   +  +   + G     LT  Y     A 
Sbjct: 14  REVKITRGFTTHPA-GSVLVEFGNTRVMCTASVEDGVPRWRQGSGLGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G    + +       ISR++ RS+R         E  +    +V+Q D       
Sbjct: 73  -HTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL+ +              P    +    V  ++G+  L+ P  ++ +  +D
Sbjct: 130 AAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKL 221
           + V  T    L+      +       + D +LD+ + G  +   + +A  +L
Sbjct: 190 MNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALEL 241


>gi|284043327|ref|YP_003393667.1| ribonuclease PH [Conexibacter woesei DSM 14684]
 gi|283947548|gb|ADB50292.1| ribonuclease PH [Conexibacter woesei DSM 14684]
          Length = 245

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 24/251 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R  GR +E +R +S + G ++   GS+L   G+T+ I   ++    +E     ++G 
Sbjct: 2   TGERSYGRTAEGLRPVSFEPGFVRSATGSALIAIGETRVICTASV----EESVPRWMTGR 57

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y  LP +TG+        G    R +   RL  R++  V+  +A    T+ +
Sbjct: 58  GTGWLTAEYGMLPASTGQRKARDVTKGRADGRTVEIQRLIGRSLRGVVDFSALGERTVYV 117

Query: 426 VSEITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G  +AL           +   +P++  VA ++ G+V    D +
Sbjct: 118 DCDVLQADGGTRCASITGGFVALQLACERLVADGLLERLPLTGSVAAVSAGIV----DGV 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            L D+   ED    +D  V  T   G+  +Q   +   +S   +   L  A+RG   +  
Sbjct: 174 PLLDLDYPEDSTAEVDANVVMTGEGGLVEVQATAERTPLSRAHLDDLLALAERGIAELRA 233

Query: 534 EMSKVLSESRL 544
                ++  R 
Sbjct: 234 AQEAAVAAGRP 244



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 24/199 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  E G + R + G+ L   GET V+ T   + S+     G+    LT  Y     + 
Sbjct: 15  RPVSFEPGFV-RSATGSALIAIGETRVICTASVEESVPRWMTGRGTGWLTAEYGMLPAST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
           G+     + +  R     + I R+I RS+R +       E    V  +V+Q D       
Sbjct: 74  GQRKARDVTK-GRADGRTVEIQRLIGRSLRGVVDFSALGERTVYVDCDVLQADGG--TRC 130

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSL 174
            S+     AL L+            LP  G V       ++G  +L+   P     +   
Sbjct: 131 ASITGGFVALQLACERLVADGLLERLPLTGSVAAVSAGIVDGVPLLDLDYPEDSTAEVDA 190

Query: 175 DLFVSGTQDAVLMVELEAN 193
           ++ ++G +  ++ V+  A 
Sbjct: 191 NVVMTG-EGGLVEVQATAE 208


>gi|237654670|ref|YP_002890984.1| ribonuclease PH [Thauera sp. MZ1T]
 gi|237625917|gb|ACR02607.1| ribonuclease PH [Thauera sp. MZ1T]
          Length = 243

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 24/219 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R +    G      GS L   G T+ +   ++    +E     L G  +
Sbjct: 1   MRPSLRQPDQLRAVRLTRGFTCHAEGSVLVEFGATRVLCTASV----EETVPGFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLGALGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A+ DA V           P+ + VA +++G+       + +
Sbjct: 117 DVLQADGGTRTAAITGACVAVHDALVGLVAAGKLAHNPMREFVAAVSVGI----HQGVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISE 514
            D+   ED     D  V  T+  G+  +Q   +    S 
Sbjct: 173 LDLDYAEDSDCDTDMNVVMTEGGGLIEVQGTAEGTPFSR 211



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 17/186 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL T   + ++     G+    +T  Y     A           + +
Sbjct: 24  AEGSVLVEFGATRVLCTASVEETVPGFLRGKGQGWVTAEYGMLPRAT-HTRSAREAAKGK 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVV---------SMV 132
            +     I R+I RS+R +       E Q++   +V+Q D  +    +         ++V
Sbjct: 83  QSGRTQEIQRLIGRSLRAVVDLGALGERQIVVDCDVLQADGGTRTAAITGACVAVHDALV 142

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQ-DAVLMVEL 190
              AA  L+  P    V    V    G  VL+    ED     D+ V  T+   ++ V+ 
Sbjct: 143 GLVAAGKLAHNPMREFVAAVSVGIHQGVPVLDLDYAEDSDCDTDMNVVMTEGGGLIEVQG 202

Query: 191 EANQLS 196
            A    
Sbjct: 203 TAEGTP 208


>gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4]
 gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4]
          Length = 262

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R++    G      GS L   G+T+ +   ++    ++       GT   
Sbjct: 4   REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASV----EDGVPRWRQGTGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL+DA              PIS  +A +++G+V    D  + 
Sbjct: 120 VLQADGGTRTAAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVV----DGRVR 175

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A  G   +    
Sbjct: 176 LDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQ 235

Query: 536 SKVLSESRL 544
              L     
Sbjct: 236 KAALELPYP 244



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 91/253 (35%), Gaps = 36/253 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +K+  G     + G+VL  +G T V+ T   +  +   + G     LT  Y     A 
Sbjct: 14  REVKITRGFTTHPA-GSVLVEFGNTRVMCTASVEDGVPRWRQGTGLGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                G    + +       ISR++ RS+R         E  +    +V+Q D       
Sbjct: 73  -HTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL+ +              P    +    V  ++G+  L+ P  ++ +  +D
Sbjct: 130 AAITGAYVALVDAVTYLRAAGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           + V  T    L+      +       + D +LD+ + G        E + ++ K   + P
Sbjct: 190 MNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAG-------CEQLFEIQKAALELP 242

Query: 230 IVIDSKDFSKLEE 242
              +  +  K+ E
Sbjct: 243 YPGELPE-PKVPE 254


>gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
 gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
          Length = 254

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +RDI    G  Q   GS L   G+T+ +   ++     E      SG+   
Sbjct: 3   RTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASVT----EGVPRWRSGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++   +   A    T+ I  +
Sbjct: 59  WVTAEYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  ++ +++G+V    D  + 
Sbjct: 119 VIQADGGTRTAAITGAYVALADAVTWLGAAGRLADPQPLSCAISAVSVGVV----DGRVR 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A +G   +    
Sbjct: 175 LDLPYEEDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDRMLDLALQGCAELNRLQ 234

Query: 536 SKVLSESRL 544
           ++ L++   
Sbjct: 235 TEALAQPYP 243



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 30/220 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL        +   + G     +T  Y     A     G     + R  
Sbjct: 27  GSVLIEFGNTRVLCAASVTEGVPRWRSGSGLGWVTAEYAMLPSAT-HTRGDRESIKGRVG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR+I RS+R         E  ++   +V+Q D        ++  A  AL  +  
Sbjct: 86  GRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQADGG--TRTAAITGAYVALADAVT 143

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVEL 190
                       P    +    V  ++G+  L+ P  ++ +  +D+ V  T    L+   
Sbjct: 144 WLGAAGRLADPQPLSCAISAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDAGTLVEVQ 203

Query: 191 EANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
              +       + D +LD        C  +    ++    
Sbjct: 204 GTGEGATFARSTLDRMLD---LALQGCAELNRLQTEALAQ 240


>gi|87308273|ref|ZP_01090414.1| ribonuclease PH [Blastopirellula marina DSM 3645]
 gi|87288830|gb|EAQ80723.1| ribonuclease PH [Blastopirellula marina DSM 3645]
          Length = 237

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 20/240 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R++  +    +   GS L   G T  +   ++ +         L G+ + 
Sbjct: 3   RHDGRKANQLRELKIKRRFTKNAAGSVLIQTGATTVLCTASVESS----VPPWLKGSGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                YN LP +T           R     RL  R++  V    A     + +  ++ ++
Sbjct: 59  WITAEYNMLPGSTPTRKSR-KVDGRTTEIQRLIGRSLRAVADLEALGEQMITVDCDVLDA 117

Query: 433 DGSSSMATVCGSSLALMD----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           DG +  A++ G+ +AL+D             P+   VA +++GLV          D+   
Sbjct: 118 DGGTRTASITGAFIALVDALQTIVLPDPKKFPLVDSVAAVSVGLVNGAGA----LDLDYI 173

Query: 483 EDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           ED    +D  V  T SG    +Q   +    +E  ++  +Q  K G   +    +K L +
Sbjct: 174 EDVDAAVDMNVVMTGSGKFVEVQGAGEEATFTEEELMKLIQLGKHGVKVLTEAQAKALGK 233



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 29/233 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R LK++  R  + + G+VL   G T VL T   + S+     G     +T  Y       
Sbjct: 13  RELKIKR-RFTKNAAGSVLIQTGATTVLCTASVESSVPPWLKGSGKGWITAEYNMLP--- 68

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G  P    R+  +       I R+I RS+R +       E  + ++    D +      S
Sbjct: 69  GSTPT---RKSRKVDGRTTEIQRLIGRSLRAVADLEALGEQMITVDCDVLDADGGTRTAS 125

Query: 131 MVAASAALMLS----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLF 177
           +  A  AL+ +            P    V    V  +NG   L+    ED      +++ 
Sbjct: 126 ITGAFIALVDALQTIVLPDPKKFPLVDSVAAVSVGLVNGAGALDLDYIEDVDAAVDMNVV 185

Query: 178 VSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           ++G+    + V+    +   +E+ ++  I  G +  K + EA    AK   K+
Sbjct: 186 MTGS-GKFVEVQGAGEEATFTEEELMKLIQLGKHGVKVLTEAQ---AKALGKK 234


>gi|157373519|ref|YP_001472119.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
 gi|189043777|sp|A8FQ68|RNPH_SHESH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157315893|gb|ABV34991.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
          Length = 237

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R     R ++          GS L   GDT+ +   +     +E     L G  +
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASF----EEGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R++   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDSLNWARGKGILKTNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G +  +Q   +    S   ++  L+ AK G   I++  
Sbjct: 173 CDLEYIEDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQ 232

Query: 536 SKVLS 540
              LS
Sbjct: 233 KAALS 237



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 22/229 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T +    ++G+VL  +G+T VL T  ++  +     G+    +T  Y     + 
Sbjct: 12  RPVTI-TRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGKGQGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       + +     I R+I RS+R         E  ++   +V+Q D       
Sbjct: 71  -HSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            ++  A  AL+ S       G+    P +  +    V    G+ + +    ++ +   D+
Sbjct: 128 AAITGACVALVDSLNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSEAETDM 187

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            V  T+   + +E++     E    + ++      K  I  I  + K  
Sbjct: 188 NVVMTETGKM-IEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKAA 235


>gi|148359584|ref|YP_001250791.1| ribonuclease PH [Legionella pneumophila str. Corby]
 gi|296107626|ref|YP_003619327.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
 gi|166228288|sp|A5IDJ5|RNPH_LEGPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148281357|gb|ABQ55445.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Corby]
 gi|295649528|gb|ADG25375.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
          Length = 235

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R+ + +R ++          GS L   G T+ I   ++     E     L G  +
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASI----VEGVPRFLKGKNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +A+ D             +P+   VA +++G+         +
Sbjct: 117 DVIQADGGTRTAAITGSCVAMRDAIHWMVQREKIKKMPVFNYVAAVSVGIY----RGQPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED L   D  V   + G    +Q   +    +   +   L  A+ G   ++   
Sbjct: 173 LDLDYAEDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KNA 235



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAV-GKIPGGYL 78
           ++G+VL  +G+T V+       S+ +G   F        +T  Y     A   +      
Sbjct: 24  AEGSVLVEFGQTKVICNA----SIVEGVPRFLKGKNQGWITAEYGMLPRATHSRTEREAS 79

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASA 136
           +   +     + I R+I RS+R         E  +    +V+Q D        ++  +  
Sbjct: 80  K--GKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQADGG--TRTAAITGSCV 135

Query: 137 AL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQ 182
           A+            +  +P    V    V    GQ VL+    ED   +  +++ ++  Q
Sbjct: 136 AMRDAIHWMVQREKIKKMPVFNYVAAVSVGIYRGQPVLDLDYAEDVLAETDMNVVMN-EQ 194

Query: 183 DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
              + V+  A   S   + +   +         +IE   
Sbjct: 195 GHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQK 233


>gi|94496905|ref|ZP_01303479.1| RNase PH [Sphingomonas sp. SKA58]
 gi|94423581|gb|EAT08608.1| RNase PH [Sphingomonas sp. SKA58]
          Length = 238

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 23/203 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R+I+ + G      GS L   GDT+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDQMRNITMEPGFTIHAEGSCLVSFGDTRVLCTASV----EEKVPPFLRGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+   A     + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL                PI + VA I+ G+     +   +
Sbjct: 117 DVIQADGGTRTAAISGSWVALRIAVDKLLASGALTQDPIIQKVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG 499
            D+   ED     D  +  T  G
Sbjct: 173 LDLDYAEDSNAETDANLILTGDG 195



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 23/186 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E G     ++G+ L ++G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RNITMEPG-FTIHAEGSCLVSFGDTRVLCTASVEEKVPPFLRGKGSGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q++   +V+Q D       
Sbjct: 71  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  +  AL +       SG     P    V        NG  VL+    ED   +   
Sbjct: 128 AAISGSWVALRIAVDKLLASGALTQDPIIQKVAAISCGIYNGTPVLDLDYAEDSNAETDA 187

Query: 175 DLFVSG 180
           +L ++G
Sbjct: 188 NLILTG 193


>gi|260219850|emb|CBA26795.1| Ribonuclease PH [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 242

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR   R ++ +R +           GS L   G+T+ +   ++    +E+      G+  
Sbjct: 5   VRQGARAADALRPVRITRHYTMHAEGSVLIEFGNTKVLCTASV----EEKVPPHKRGSGE 60

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R     RL  R++  V         T+++  
Sbjct: 61  GWVTAEYGMLPRATHSRSDREAARGKQTGRTQEIQRLIGRSLRAVFDLKKLGERTIQLDC 120

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A  D              PI+  VA I++G+V    +   L
Sbjct: 121 DVIQADGGTRTAAITGAFVAAQDAVNGLLAAGKITETPITAAVAAISVGIV----EGTPL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T +G    +Q   +    +   M   L  A++G   ++   
Sbjct: 177 LDLEYTEDSACDTDMNVVMTGAGHFVEVQGTAEGVTFTRAEMDQLLTLAEKGVGELMLLQ 236

Query: 536 SKVLSE 541
            +VLS+
Sbjct: 237 QQVLSK 242



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 77/200 (38%), Gaps = 20/200 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T      ++G+VL  +G T VL T   +  +     G     +T  Y     A 
Sbjct: 16  RPVRI-TRHYTMHAEGSVLIEFGNTKVLCTASVEEKVPPHKRGSGEGWVTAEYGMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
                    R  + T     I R+I RS+R +F   K  +   Q+  +V+Q D  +    
Sbjct: 75  HSRSDREAAR-GKQTGRTQEIQRLIGRSLRAVFDLKKLGERTIQLDCDVIQADGGTRTAA 133

Query: 129 V---------SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDL 176
           +         ++    AA  ++  P    V    V  + G  +L+    ED      +++
Sbjct: 134 ITGAFVAAQDAVNGLLAAGKITETPITAAVAAISVGIVEGTPLLDLEYTEDSACDTDMNV 193

Query: 177 FVSGTQDAVLMVELEANQLS 196
            ++G    V  V+  A  ++
Sbjct: 194 VMTGAGHFV-EVQGTAEGVT 212


>gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547]
 gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547]
          Length = 288

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 93/259 (35%), Gaps = 26/259 (10%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +RD+    G L    GS L   G T+ +   +            L G  
Sbjct: 21  GARHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASFQPG----VPRWLKGQG 76

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G    R     RL  RA+   +  +A    T+ I 
Sbjct: 77  TGWVTGEYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVID 136

Query: 427 SEITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDF 473
            ++ ++DG +  A + G+ +AL D          +P     +   +  I++G+V    D 
Sbjct: 137 CDVLQADGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIV----DG 192

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             + D+   ED     D  V  T +G +  +Q   +       ++   L  A+ G   + 
Sbjct: 193 QPVLDLDYPEDSGAGADMNVVMTGAGELVEVQGTAEGQTFDRAMLNALLDLAQDGCATLA 252

Query: 533 NEMSKVLSESRLQLGEFTP 551
                 L+    +  E +P
Sbjct: 253 AAQQAALALDAGERLEVSP 271



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 27/213 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++  G +   + G+VL  +G T VL    +   +     GQ    +T  Y     A 
Sbjct: 33  RDVRITRGWL-DHAAGSVLIEFGRTRVLCAASFQPGVPRWLKGQGTGWVTGEYAMLPAAT 91

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + +       ISR++ R++R         E  ++   +V+Q D       
Sbjct: 92  -HTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVIDCDVLQADGG--TRT 148

Query: 129 VSMVAASAALMLS--------GLP-----FEGPVVGAQVDYINGQYVLNPRLDEDQG--- 172
            ++  A  AL  +         +P         +    V  ++GQ VL+    ED G   
Sbjct: 149 AAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQPVLDLDYPEDSGAGA 208

Query: 173 SLDLFVSGTQDAVLMVELEANQLSED-VVLDAI 204
            +++ ++G  + ++ V+  A   + D  +L+A+
Sbjct: 209 DMNVVMTGAGE-LVEVQGTAEGQTFDRAMLNAL 240


>gi|169831661|ref|YP_001717643.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
 gi|226736902|sp|B1I4W9|RNPH_DESAP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169638505|gb|ACA60011.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
          Length = 261

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 33/259 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR    +R +       +   GS+L   GDT+ I   ++    D +    L G  +
Sbjct: 2   IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASI----DNRVPTFLKGAGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 +  LP ATG         G P  R +   RL  R++  V+   A    T+ +  
Sbjct: 58  GWVTAEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL+DA            +P+   VA  ++GL     +   +
Sbjct: 118 DVIQADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLF----EGEAV 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-- 534
            D+   ED    +DF V  T +G   +++     G +        ++A   RL  L    
Sbjct: 174 LDLCFAEDSAAEVDFNVVMTGTG-RFVEVQGTGEGTT-------FERADVDRLLDLAVVG 225

Query: 535 MSKVLSESRLQLGEFTPRV 553
           +  ++ + R  LG     +
Sbjct: 226 IRSLVEQQRAVLGSLAEEI 244



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 28/238 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ + T    + ++G+ L   G+T V+ T   D  +     G     +T  +     A 
Sbjct: 13  RPVYI-TRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVTAEFGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
           G + G     +  P    + I R+I RS+R +       E  VI   +V+Q D       
Sbjct: 72  G-VRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++     AL+ +            LP    V    V    G+ VL+    ED   +   
Sbjct: 129 AAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLFEGEAVLDLCFAEDSAAEVDF 188

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK----LAKMCAK 227
           ++ ++GT   V +    E        V   +       + ++E        LA+   K
Sbjct: 189 NVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQRAVLGSLAEEIGK 246


>gi|260886704|ref|ZP_05897967.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|330839468|ref|YP_004414048.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
 gi|260863556|gb|EEX78056.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|329747232|gb|AEC00589.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
          Length = 248

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 21/240 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+ GR ++ +R +    G  +   GS L   G T+ I   ++    +++    L GT   
Sbjct: 3   RIRGRAADALRPLKMMRGFQKGPAGSVLIEMGRTRVICAASV----EDRVPYFLRGTGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R     RL  R++  V+   A    T+ +  +
Sbjct: 59  WIKAEYALLPSATSTRTPREACQGRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG---------VPISKPVAGIAMGLVKDGDDFIILSDI 479
           + E+DG +  A + G+ +AL++A           P+   +A +++GL +DG+    + D+
Sbjct: 119 VIEADGGTRTAAITGAFVALVEACASFYEKGKTFPVKDFLAAVSVGLAQDGEP---ILDL 175

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +ED    +D  V  T +     +Q   +    S   M   L  A++G   ++      
Sbjct: 176 CYEEDSTALVDMNVVMTGAYDFVEVQGTGEGRPFSRREMADLLALAEKGVDELIARQKDA 235



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 35/227 (15%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVG-KIPGGYLRRE--- 81
           G+VL   G T V+     +  +     G     +   Y     A   + P     RE   
Sbjct: 27  GSVLIEMGRTRVICAASVEDRVPYFLRGTGTGWIKAEYALLPSATSTRTP-----REACQ 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM 139
            R +     I R+I RS+R +       E  +    +V++ D        ++  A  AL+
Sbjct: 82  GRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCDVIEADGG--TRTAAITGAFVALV 139

Query: 140 LS---------GLPFEGPVVGAQVDY-INGQYVLNPRLDEDQG---SLDLFVSGTQDAV- 185
            +           P +  +    V    +G+ +L+   +ED      +++ ++G  D V 
Sbjct: 140 EACASFYEKGKTFPVKDFLAAVSVGLAQDGEPILDLCYEEDSTALVDMNVVMTGAYDFVE 199

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS-----KLAKMCAK 227
           +    E    S   + D +         +I         +L     +
Sbjct: 200 VQGTGEGRPFSRREMADLLALAEKGVDELIARQKDALGGELVWKVGR 246


>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
 gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
          Length = 251

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 7/231 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   ELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKGKNK 64

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S S +        Y+    +T E        R+        ++A+   +         + 
Sbjct: 65  S-SESNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQID 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 124 VYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQVEE 180

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   T   I  ++M  +        ++       R    IL 
Sbjct: 181 ISGGPKLTVAALPTSEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILE 231



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 21/217 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-----FPLTVNYQERTY 68
           R +K + G    Q DG+     G T VLA V      K            +   Y + T+
Sbjct: 24  RHIKCKLGVF-EQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVIINCQYSQATF 82

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
           +  +      +   R           + +++          +++  V + V+Q D  +  
Sbjct: 83  STAE-----RKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQADGANYA 137

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNP--RLDEDQGSLDLFVSG--TQ 182
             V++ AA+ AL+ +G+     +V            L    +++E  G   L V+   T 
Sbjct: 138 --VALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQVEEISGGPKLTVAALPTS 195

Query: 183 DAVLMVELEANQLSE--DVVLDAIIFGHNECKPVIEA 217
           + +  +E+      +  + V++  + G  E + ++EA
Sbjct: 196 EKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEA 232


>gi|294011052|ref|YP_003544512.1| ribonuclease PH [Sphingobium japonicum UT26S]
 gi|292674382|dbj|BAI95900.1| ribonuclease PH [Sphingobium japonicum UT26S]
          Length = 238

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 24/219 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +RDI+ + G      GS L   GDT+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDQMRDITMEPGFTIHAEGSCLVSFGDTRVLCTASI----EEKVPPFLRGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL             A  PI + VA I+ G+     +   +
Sbjct: 117 DVIQADGGTRTAAISGSWVALRIAIDGLLASGALAEDPIVQKVAAISCGIY----NGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D+   ED     D  +  T  G    ++     G + +
Sbjct: 173 LDLDYAEDSNAEADANLILTGDG-KFAEVQATAEGATYD 210



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 23/186 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E G     ++G+ L ++G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RDITMEPG-FTIHAEGSCLVSFGDTRVLCTASIEEKVPPFLRGKGSGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q++   +V+Q D       
Sbjct: 71  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  +  AL            L+  P    V        NG  VL+    ED   +   
Sbjct: 128 AAISGSWVALRIAIDGLLASGALAEDPIVQKVAAISCGIYNGTPVLDLDYAEDSNAEADA 187

Query: 175 DLFVSG 180
           +L ++G
Sbjct: 188 NLILTG 193


>gi|103485749|ref|YP_615310.1| ribonuclease PH [Sphingopyxis alaskensis RB2256]
 gi|123380170|sp|Q1GWJ5|RNPH_SPHAL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|98975826|gb|ABF51977.1| RNAse PH [Sphingopyxis alaskensis RB2256]
          Length = 238

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I+ +        GS L   G+T+ +V  ++    +E+    L G  +
Sbjct: 1   MRPSGRAADQMRPIAIETNFTIHAEGSVLVSFGNTRVLVTASV----EEKVPPFLRGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+         + I  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMQKLGERQIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL                PI   VA I+ G+ K       +
Sbjct: 117 DVIQADGGTRTASISGAWVALRLAVDKLIEAKQLTEDPIVDSVAAISCGIYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED +   D     T  G I  +Q   +     E  ++  L+ A+ G   I    
Sbjct: 173 LDLDYDEDSVAEADGNFVLTGKGQIVEVQASAEGATYDEEGLLRLLRLARIGCGEIFAAQ 232

Query: 536 SKV 538
           +K 
Sbjct: 233 AKA 235



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 26/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ET      ++G+VL ++G T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RPIAIETN-FTIHAEGSVLVSFGNTRVLVTASVEEKVPPFLRGKGQGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q++   +V+Q D       
Sbjct: 71  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMQKLGERQIVIDCDVIQADGG--TRT 127

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            L+  P    V         G  VL+   DED   +   
Sbjct: 128 ASISGAWVALRLAVDKLIEAKQLTEDPIVDSVAAISCGIYKGTPVLDLDYDEDSVAEADG 187

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLA 222
           +  ++G +  ++ V+  A   +  E+ +L  +      C  +  A +K  
Sbjct: 188 NFVLTG-KGQIVEVQASAEGATYDEEGLLRLLRLARIGCGEIFAAQAKAV 236


>gi|322436088|ref|YP_004218300.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
 gi|321163815|gb|ADW69520.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
          Length = 245

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 93/246 (37%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R +  +R      G +    GS L   G+T+ +   T+ T         +  + + 
Sbjct: 7   RPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIETG----VPGWMRNSGKG 62

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  ++   A    T+ +  +
Sbjct: 63  WVTAEYGMLPRATLTRSPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+S+AL                P+ + +A  ++G+V    D   L 
Sbjct: 123 VLQADGGTRTAAITGASVALAIALGKLVQAGTLKASPLKQMIAATSVGIV----DGNTLL 178

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++ +ED    +D  V    S G+   Q   +    S   +   L  A+ G   +L    
Sbjct: 179 DLAYEEDSRATVDMNVVMLASGGLVETQATAEKDSYSRQQLTEMLDLAEAGIRDLLILQQ 238

Query: 537 KVLSES 542
             L+ +
Sbjct: 239 TALTAA 244



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 35/217 (16%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T VL     +  +           +T  Y       G +P   L R  R  
Sbjct: 31  GSVLIEVGNTRVLCNATIETGVPGWMRNSGKGWVTAEY-------GMLPRATLTRSPREA 83

Query: 86  E------NEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAA 137
           E          I R+I RS+R +       E  +I   +V+Q D        ++  AS A
Sbjct: 84  EKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCDVLQADGG--TRTAAITGASVA 141

Query: 138 LMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
           L ++             P +  +    V  ++G  +L+   +ED      +++ +  +  
Sbjct: 142 LAIALGKLVQAGTLKASPLKQMIAATSVGIVDGNTLLDLAYEEDSRATVDMNVVMLASGG 201

Query: 184 AV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            V      E +  S   + + +       + ++    
Sbjct: 202 LVETQATAEKDSYSRQQLTEMLDLAEAGIRDLLILQQ 238


>gi|296314065|ref|ZP_06864006.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
 gi|296839317|gb|EFH23255.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
          Length = 241

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 16/236 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILTENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
               D  +  T SG I  +Q   +    S   +   +  A++G   ++      L+
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIRELVRYQKAALN 240



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALMLS-------GLPFEGPV----VGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL ++       G+  E P+           +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILTENPIREAVAAVSAGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S + +   I       + ++    
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEGAPFSLEELGKLIGLAEKGIRELVRYQK 236


>gi|59801347|ref|YP_208059.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|194098405|ref|YP_002001463.1| ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|239998810|ref|ZP_04718734.1| putative ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|240014274|ref|ZP_04721187.1| putative ribonuclease PH [Neisseria gonorrhoeae DGI18]
 gi|240016710|ref|ZP_04723250.1| putative ribonuclease PH [Neisseria gonorrhoeae FA6140]
 gi|240080902|ref|ZP_04725445.1| putative ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|240112738|ref|ZP_04727228.1| putative ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|240115487|ref|ZP_04729549.1| putative ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|240117781|ref|ZP_04731843.1| putative ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|240121837|ref|ZP_04734799.1| putative ribonuclease PH [Neisseria gonorrhoeae PID24-1]
 gi|240123337|ref|ZP_04736293.1| putative ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|240125585|ref|ZP_04738471.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|240128040|ref|ZP_04740701.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|254493595|ref|ZP_05106766.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|260440703|ref|ZP_05794519.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|268594653|ref|ZP_06128820.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268597020|ref|ZP_06131187.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268598803|ref|ZP_06132970.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268601161|ref|ZP_06135328.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268603481|ref|ZP_06137648.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268681961|ref|ZP_06148823.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268684174|ref|ZP_06151036.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268686430|ref|ZP_06153292.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291044013|ref|ZP_06569729.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|293399206|ref|ZP_06643371.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|75432481|sp|Q5F840|RNPH_NEIG1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736920|sp|B4RL28|RNPH_NEIG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59718242|gb|AAW89647.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|193933695|gb|ACF29519.1| putative ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|226512635|gb|EEH61980.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|268548042|gb|EEZ43460.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268550808|gb|EEZ45827.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268582934|gb|EEZ47610.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268585292|gb|EEZ49968.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268587612|gb|EEZ52288.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268622245|gb|EEZ54645.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268624458|gb|EEZ56858.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268626714|gb|EEZ59114.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291012476|gb|EFE04465.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|291610620|gb|EFF39730.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|317164098|gb|ADV07639.1| ribonuclease PH [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 242

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 16/236 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASV----DENAPPFLHGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTALRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPILEAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
               D  +  T SG I  +Q   +    S + +   +  A++G   +L      LS
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLVALAQKGIGELLRYQQNALS 240



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D +      G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASVDENAPPFLHGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  AL----RMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALMLS-------GLPFEGPV----VGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL ++       G+  E P+           +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPILEAVAAVSAGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D +   +         ++    
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEGAPFSLDELGKLVALAQKGIGELLRYQQ 236


>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
 gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
          Length = 296

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 25/265 (9%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R+ +     R DGR    +R +    G  +   GS L   G T+ +   ++     E   
Sbjct: 32  RSRVGVVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVT----EGVP 87

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                T        Y  LP AT   S      G  S R     RL  R++   +   A  
Sbjct: 88  RWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALG 147

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLV 467
             T+ I  ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V
Sbjct: 148 ENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV 207

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKR 526
               D  I  D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A  
Sbjct: 208 ----DGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALG 263

Query: 527 GRLHILNEMSKVLSESRLQLGEFTP 551
               +       L+     +    P
Sbjct: 264 ACDTLFAAQRDALALPYPGVLPQGP 288



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 24/200 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +  G       G+VL  +G T VL T                   LT  Y     A
Sbjct: 51  RPVIITRG-FTENPAGSVLIEFGHTKVLCTASVT-EGVPRWRKATGLGWLTAEYAMLPSA 108

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
                     R  R +     ISR+I RS+R          N   +  +V+Q D      
Sbjct: 109 THSRSDRESVR-GRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TR 165

Query: 128 VVSMVAA-----------SAALMLSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSL 174
             ++  A           SAA  LS   P    +    V  ++G+  ++ P  ++ +  +
Sbjct: 166 TAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEV 225

Query: 175 DLFVSGTQDAVLMVELEANQ 194
           D+ V  T    L+      +
Sbjct: 226 DMNVVATDTGTLVEIQGTGE 245


>gi|297571668|ref|YP_003697442.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
 gi|296932015|gb|ADH92823.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
          Length = 246

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +      L    GS L   G+T+ + V +      E        +   
Sbjct: 6   RADGRATNELRPVKITRNFLDAGEGSVLVEFGNTKVLCVASFT----EGVPRWRKDSGLG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   ++     G  S R     RL  RA+  V+  +A    T+ +  +
Sbjct: 62  WVTGEYSMLPRATSTRNQRESVKGKVSGRTQEISRLVGRALRAVVDMSALGDNTIVLDCD 121

Query: 429 ITESDGSSSMATVCGSSLALMD--------------AGVP-ISKPVAGIAMGLVKDGDDF 473
           + ++DG +  A++ G+ +AL D              AG P +   VA I++G++    D 
Sbjct: 122 VLQADGGTRTASITGAYVALADAVAWGIERGHIKPRAGKPVLRDSVAAISVGII----DG 177

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +   D+  +ED     D  V  T +G    +Q   +        +   L  A  G   + 
Sbjct: 178 VPCLDLPYEEDVRAETDMNVVMTGTGKFIEVQGTAEGEPFDRTELGQLLDLATAGCQELT 237

Query: 533 NEMSKV 538
           ++ +  
Sbjct: 238 SKQNDA 243



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 26/180 (14%)

Query: 29  GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL      +   +  +D     +T  Y     A           + + +
Sbjct: 30  GSVLVEFGNTKVLCVASFTEGVPRWRKDSGLGWVTGEYSMLPRATS-TRNQRESVKGKVS 88

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALML--- 140
                ISR++ R++R +       +  ++   +V+Q D        S+  A  AL     
Sbjct: 89  GRTQEISRLVGRALRAVVDMSALGDNTIVLDCDVLQADGG--TRTASITGAYVALADAVA 146

Query: 141 -----------SGLP-FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                      +G P     V    V  I+G   L+   +ED   +  +++ ++GT   +
Sbjct: 147 WGIERGHIKPRAGKPVLRDSVAAISVGIIDGVPCLDLPYEEDVRAETDMNVVMTGTGKFI 206


>gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
 gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
          Length = 252

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS--GTQ 370
           R D R  + +R I  + G+     GS L   G T+ I   ++    D++    +   G +
Sbjct: 11  RPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICAASI----DKKVPGWMRAQGVE 66

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y+ LP +T +        G    R I   RL  R++  V         T+ I 
Sbjct: 67  GGWMTAEYSMLPYSTLDRKPRDISRGKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWID 126

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A++ G+ +A       L+ AG     P +  VA I++G+ +D      
Sbjct: 127 CDVLQADGGTRTASISGAYVAAQIAVQKLIAAGELEANPFTDSVAAISVGVFQDTP---- 182

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D++  ED    +D  +  T +G    +Q   +        +   L+   +G   +   
Sbjct: 183 VLDLNYPEDKDASVDANIVMTGTGKYVEVQSSGEEATFDRAELDTLLELGAKGIQELSAL 242

Query: 535 MSKVLSE 541
             + +  
Sbjct: 243 QQQAIEA 249



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RP+  ETG IA  + G+VL ++G+T V+     D+ +  G           +T  Y    
Sbjct: 21  RPIHFETG-IAPHALGSVLVSFGQTRVICAASIDKKV-PGWMRAQGVEGGWMTAEYSMLP 78

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESS 125
           Y+        + R  +     I I R+I RS+R +F   K       +  +V+Q D  + 
Sbjct: 79  YSTLDRKPRDISR-GKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWIDCDVLQADGGTR 137

Query: 126 PHVV--SMVAASAALM-------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
              +  + VAA  A+        L   PF   V    V       VL+    ED+     
Sbjct: 138 TASISGAYVAAQIAVQKLIAAGELEANPFTDSVAAISVGVFQDTPVLDLNYPEDKDASVD 197

Query: 174 LDLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAKM 224
            ++ ++GT   V  V+    + + D   +   +  G    + +     +  + 
Sbjct: 198 ANIVMTGTGKYV-EVQSSGEEATFDRAELDTLLELGAKGIQELSALQQQAIEA 249


>gi|255659135|ref|ZP_05404544.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
 gi|260848582|gb|EEX68589.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
          Length = 248

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 21/240 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R ++ +R         +   GS L   G+T+ I   ++    +++    L GT   
Sbjct: 3   RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASI----EDRVPFFLRGTGEG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   ++     G  S R     RL  R++  V+   A    T+ I  +
Sbjct: 59  WIAAEYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAG---------VPISKPVAGIAMGLVKDGDDFIILSDI 479
           + ++DG +  A++ G+ +AL++A           P+   ++ I++G+  +G   + + D+
Sbjct: 119 VIQADGGTRTASITGAFVALVEACASFYEKGKIFPVKDFLSAISVGVSHEG---VPILDL 175

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +ED    +D  V  T  G    +Q   +    +   +   L   ++G   +++    V
Sbjct: 176 CYEEDSRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDV 235



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 30/210 (14%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGYLRRE 81
           G+VL   G T V+       S++D   FF        +   Y     A  +         
Sbjct: 27  GSVLIEMGNTKVICAA----SIEDRVPFFLRGTGEGWIAAEYSLLPSAT-ETRTQREAVR 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM 139
            + +     I R+I RS+R +       E  ++   +V+Q D        S+  A  AL+
Sbjct: 82  GKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQADGG--TRTASITGAFVALV 139

Query: 140 LSGL---------PFEGPVVGAQVDY-INGQYVLNPRLDEDQG---SLDLFVSGTQDAV- 185
            +           P +  +    V     G  +L+   +ED      +++ ++G    V 
Sbjct: 140 EACASFYEKGKIFPVKDFLSAISVGVSHEGVPILDLCYEEDSRAIVDMNVVMTGVGRFVE 199

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVI 215
           +    E    + + + + +  G   C+ +I
Sbjct: 200 VQGTGEGRPFTHEELGELLALGEKGCRELI 229


>gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
 gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
          Length = 242

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R+DGR  + +R +  +VG+L    GS++   G T+ +  V  G RE  Q    L  
Sbjct: 11  ENGRRLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAV-YGPREPLQKYTVL-- 67

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
             R    + Y+  P +T E      P+RRE+   ++ R A+ PV+         + +  E
Sbjct: 68  PDRASLFVRYHMAPFSTEERKS-PVPTRREVEISKVLREALEPVVITELFPRTVIEVYVE 126

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + +SDG +  A+   +SLAL DAG+P+   VAG+A+G V +    +++ D++  ED+ G 
Sbjct: 127 VLQSDGGTRTASATAASLALADAGIPMRALVAGVAIGKVDN----VVVLDLNEPEDNFGE 182

Query: 489 MDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            D  V        IT  Q++  +   +       L  A +    ++ +  + L  S  ++
Sbjct: 183 ADMPVVAAPDLGLITLFQLNGVM---TVEETQKGLDMALKAISELVEKEKQTLRSSIEEV 239

Query: 547 G 547
            
Sbjct: 240 D 240



 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT----VNYQERTYA 69
           RP+ ++ G ++  +DG+ + +YG+T VLA V   R         P      V Y    ++
Sbjct: 25  RPVDMKVGVLS-NADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLFVRYHMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
             +      R+   PT  E+ IS+++  ++ P+       +   +V + V+Q D      
Sbjct: 84  TEE------RKSPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQSDGG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQD-AV 185
             S  AAS AL  +G+P    V G  +  ++   VL+    ED  G  D+ V    D  +
Sbjct: 136 TASATAASLALADAGIPMRALVAGVAIGKVDNVVVLDLNEPEDNFGEADMPVVAAPDLGL 195

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
           + +      ++ +     +         ++E
Sbjct: 196 ITLFQLNGVMTVEETQKGLDMALKAISELVE 226


>gi|170078680|ref|YP_001735318.1| ribonuclease PH [Synechococcus sp. PCC 7002]
 gi|169886349|gb|ACB00063.1| ribonuclease PH [Synechococcus sp. PCC 7002]
          Length = 240

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 94/244 (38%), Gaps = 24/244 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R  + +R    ++   +    S L   GDT+ +  V++    +E     L  + + 
Sbjct: 5   RLDNRFFDQLRPFKFELDFTKFAQASVLTSCGDTKVLCTVSV----EEGVPPFLRDSGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  +P AT E  R      S R     RL  R++   +   A    T+ I +++ 
Sbjct: 61  WLTAEYRMMPGATPERQRREFMKLSGRTQEIQRLIGRSLRAAIDLKALGERTITIDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +    + G  + L  A             PI  PVA I++GL+          D+
Sbjct: 121 QADGGTRTTAITGGYVGLAIACERLVKAGILGKSPIIAPVAAISVGLI----AGQAYLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDSG---ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           +  ED    +DF V         +  +Q   + G  +   +   L  A++G   I+   +
Sbjct: 177 NYLEDVAADVDFNVVMIGGQGLNLIEVQGTAEAGSYNRAQLNQILDVAEKGIQTIMTLQT 236

Query: 537 KVLS 540
           K + 
Sbjct: 237 KAIH 240



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP K E     + +  +VL + G+T VL TV  +  +           LT  Y+      
Sbjct: 15  RPFKFEL-DFTKFAQASVLTSCGDTKVLCTVSVEEGVPPFLRDSGQGWLTAEYRMMP--- 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
           G  P    R   + +     I R+I RS+R         E    +  +V+Q D       
Sbjct: 71  GATPERQRREFMKLSGRTQEIQRLIGRSLRAAIDLKALGERTITIDADVLQADGG--TRT 128

Query: 129 VSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++      L +       +G+    P   PV    V  I GQ  L+    ED       
Sbjct: 129 TAITGGYVGLAIACERLVKAGILGKSPIIAPVAAISVGLIAGQAYLDLNYLEDVAADVDF 188

Query: 175 DLFVSGTQD-AVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           ++ + G Q   ++ V+  A   S     +   +       + ++   +K 
Sbjct: 189 NVVMIGGQGLNLIEVQGTAEAGSYNRAQLNQILDVAEKGIQTIMTLQTKA 238


>gi|15677352|ref|NP_274507.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|21759417|sp|Q9JYN5|RNPH_NEIMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|7226741|gb|AAF41855.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|316986046|gb|EFV64983.1| ribonuclease PH [Neisseria meningitidis H44/76]
 gi|325140644|gb|EGC63162.1| ribonuclease PH [Neisseria meningitidis CU385]
 gi|325199896|gb|ADY95351.1| ribonuclease PH [Neisseria meningitidis H44/76]
          Length = 242

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 16/238 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T          G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
               D  +  T SG I  +Q   +    S + +   +  A++G   +L      LS +
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALSAA 242



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  + RE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL +           S  P    V    V  +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S D +   +         +++   
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQ 236


>gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
 gi|166228314|sp|A4F913|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
          Length = 251

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 25/249 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R++    G      GS L   G T+ +   ++     E      +G+   
Sbjct: 3   RADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASV----QEGVPRWRAGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G    R     RL  R++   +   A    T+ +  +
Sbjct: 59  WVTAEYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIIL 476
           + ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  + 
Sbjct: 119 VIQADGGTRTAAITGAYVALADAITWLSAAGRLTDPKPLSCSIAAVSVGVV----DGRVR 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  TD G +  +Q   +    + + M   +  A  G   +    
Sbjct: 175 LDLPYEEDSRAEVDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQ 234

Query: 536 SKVLSESRL 544
           S+ L+    
Sbjct: 235 SEALAAPYP 243



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 24/217 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL        +   + G     +T  Y     +           + R  
Sbjct: 27  GSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTN-TRSARESVKGRIG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR++ RS+R         E  +    +V+Q D        ++  A  AL  +  
Sbjct: 86  GRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGG--TRTAAITGAYVALADAIT 143

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVEL 190
                       P    +    V  ++G+  L+ P  ++ +  +D+ V  T    L+   
Sbjct: 144 WLSAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDHGTLVEVQ 203

Query: 191 EANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
              +    +   +   I F    C  +    S+    
Sbjct: 204 GTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALAA 240


>gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
 gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
          Length = 246

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 17/243 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++   G  Q   GS L   G T+ +   ++ T           G+   
Sbjct: 3   RADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTG----VPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E S      G    R     RL  R++   L   +    T+ +  +
Sbjct: 59  WLTAEYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISK--------PVAGIAMGLVKDGDDFIILSDIS 480
           + ++DG +  A + G+ +AL DA   + +        P++     +        +  D+ 
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAYLRERGQLADPQPLSCQIAAVSVGVVGGRVRLDLP 178

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            +ED    +D  V  TD G +  +Q   +    S + +   L  A  G   +       L
Sbjct: 179 YEEDARAEVDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAGIATLTEMQRAAL 238

Query: 540 SES 542
           +  
Sbjct: 239 AGP 241



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 32/220 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+    G   +   G+VL  +G T VL            + G     LT  Y     A 
Sbjct: 13  RPVTFTRG-FQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKGSGLGWLTAEYAMLPSAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK----NETQVIINVMQHDLESSP 126
            +       +  R       ISR+I RS+R       +    N   V  +V+Q D     
Sbjct: 72  HERSDRESVK-GRVGGRTHEISRLIGRSLRACL--DLRSLGENTIAVDCDVLQADGG--T 126

Query: 127 HVVSMVAASAALMLSGL------------PFEGPVVGAQVDYINGQYVLN-PRLDEDQGS 173
              ++  A  AL  +              P    +    V  + G+  L+ P  ++ +  
Sbjct: 127 RTAAITGAYVALADAVAYLRERGQLADPQPLSCQIAAVSVGVVGGRVRLDLPYEEDARAE 186

Query: 174 LDLFVSGTQDAVLM-VELEANQL-----SEDVVLDAIIFG 207
           +D+ V  T    L+ V+  A        + D +LD+ + G
Sbjct: 187 VDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAG 226


>gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
 gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
          Length = 241

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 18/240 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R +  Q G  +   GS L   GDT+ +   ++ T           G+   
Sbjct: 3   RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTG----VPRWRRGSGSG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT          G    R     RL  RA+   L   A    T+ I  +
Sbjct: 59  WVTAEYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAG---------IAMGLVKDGDDFIILSDI 479
           + ++DG +  A + GS +AL DA   ++                  +         + D+
Sbjct: 119 VLQADGGTRTAAITGSYVALQDAVTWLTDKKMARKPDKILTRSVAAVSVGVVGGTPVLDL 178

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +D  V  T  G    +Q   +      + +   L  A +G   +     + 
Sbjct: 179 NYVEDSSADVDMNVVCTGDGDFVEVQGTGEEAVFDRSTLDALLDLATKGCKELTGAQVRA 238



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 9/131 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+K + G   +  +G+VL  +G+T VL T          + G     +T  Y     A 
Sbjct: 13  RPVKFQRGWT-KHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGWVTAEYSMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHV 128
               G     + +       ISR+I R++R     K    N   +  +V+Q D       
Sbjct: 72  N-TRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALM 139
            ++  +  AL 
Sbjct: 129 AAITGSYVALQ 139


>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
 gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
          Length = 246

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 12/231 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   ELLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKGK-- 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                  +     Y+    +T E        R+ +      ++A+   +         + 
Sbjct: 63  ----QTESIINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISHFEE 175

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   T   I  ++M  +        ++       R    IL 
Sbjct: 176 VSGGPKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILE 226



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 76/200 (38%), Gaps = 15/200 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q DG+     G T VLA V      K  Q    +   Y + T++  +      +   R  
Sbjct: 35  QPDGSAYMEQGNTKVLAAVYGPHQAKGKQTESIINCQYSQATFSTAE-----RKNRPRGD 89

Query: 86  ENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
              +     + +++          +++  + + V+Q D  +    V++ AA+ AL+ +G+
Sbjct: 90  RKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGANYA--VALNAATLALIDAGI 147

Query: 144 PFEGPVVGAQVDYINGQYVLNP--RLDEDQGSLDLFVSG--TQDAVLMVELEANQLSE-- 197
                +V            L      +E  G   L V+   T + +  +E+      +  
Sbjct: 148 CLNEFIVACTASLSKSNIPLTDISHFEEVSGGPKLTVAALPTAEKIAFLEMSERFHIDHL 207

Query: 198 DVVLDAIIFGHNECKPVIEA 217
           + V++  + G  E + ++EA
Sbjct: 208 ETVIETAMAGCREIRDILEA 227


>gi|119947081|ref|YP_944761.1| ribonuclease PH [Psychromonas ingrahamii 37]
 gi|166228305|sp|A1T097|RNPH_PSYIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119865685|gb|ABM05162.1| RNAse PH [Psychromonas ingrahamii 37]
          Length = 239

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 24/246 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  E  R+I           GS L   G+T+ +   ++           L G  +
Sbjct: 1   MRPSNRTPEQNREIKITRHYTDYAEGSVLIEMGNTKVLCNASVSGS----VPRFLKGKGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +   A     + +  
Sbjct: 57  GWVTAEYAMLPRATHIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL D              P+ + +A +++G+ +       +
Sbjct: 117 DVIQADGGTRTAAITGGCIALADALNWMVKKGKLKKSPLKQMIAAVSVGIYQGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T+S G+  +Q   + G  S   ++  L  AK G   ++ E 
Sbjct: 173 CDLDYAEDSNAETDTNVVMTESGGLIEIQATAEDGAFSHEQLLSMLSLAKGGIEALVVEQ 232

Query: 536 SKVLSE 541
            K L+ 
Sbjct: 233 KKALNA 238



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 24/229 (10%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYA 69
            R +K+ T      ++G+VL   G T VL       S+     G+    +T  Y     A
Sbjct: 11  NREIKI-TRHYTDYAEGSVLIEMGNTKVLCNASVSGSVPRFLKGKGKGWVTAEYAMLPRA 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
              I       + +     + I R+I RS+R         E    V  +V+Q D      
Sbjct: 70  T-HIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVDCDVIQADGG--TR 126

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++     AL            L   P +  +    V    G  V +    ED   +  
Sbjct: 127 TAAITGGCIALADALNWMVKKGKLKKSPLKQMIAAVSVGIYQGTPVCDLDYAEDSNAETD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            ++ ++ +   + +    E    S + +L  +       + ++    K 
Sbjct: 187 TNVVMTESGGLIEIQATAEDGAFSHEQLLSMLSLAKGGIEALVVEQKKA 235


>gi|85708632|ref|ZP_01039698.1| RNase PH [Erythrobacter sp. NAP1]
 gi|85690166|gb|EAQ30169.1| RNase PH [Erythrobacter sp. NAP1]
          Length = 227

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 24/233 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R I+ + G  +   GS L   GDT+ +   ++    +E+    L G         Y+ L
Sbjct: 1   MRTITIETGYTKHAEGSCLISFGDTKVLCTASV----EERIPPWLRGKGEGWVTGEYSML 56

Query: 382 PCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT          G  S R     RL  R++  V+         + +  ++ ++DG + 
Sbjct: 57  PRATHTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQITLDCDVIQADGGTR 116

Query: 438 MATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G+ +A       LM  G     PI+  VA I+ G+     +   + D+  DED  
Sbjct: 117 TASISGAWVALRLAVSKLMAEGAIKEDPITGQVAAISCGIF----EGTPVLDLDYDEDSS 172

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              D      D G I  +Q   +     E  ++  L+ A  G   I       
Sbjct: 173 ADADANFVLIDGGQIAEVQATAEGATYDEEGLLRLLRLANIGCDAIFKAQLDA 225



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L ++G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 2   RTITIETG-YTKHAEGSCLISFGDTKVLCTASVEERIPPWLRGKGEGWVTGEYSMLPRAT 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       + +     I R+I RS+R +       E Q+    +V+Q D  +    
Sbjct: 61  -HTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQITLDCDVIQADGGTRTAS 119

Query: 129 VSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
           +S    +  L +S L         P  G V         G  VL+   DED  
Sbjct: 120 ISGAWVALRLAVSKLMAEGAIKEDPITGQVAAISCGIFEGTPVLDLDYDEDSS 172


>gi|58039735|ref|YP_191699.1| ribonuclease PH [Gluconobacter oxydans 621H]
 gi|58002149|gb|AAW61043.1| Ribonuclease PH [Gluconobacter oxydans 621H]
          Length = 240

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 19/239 (7%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R  GR  +  R +S + G  +   GS+L   G T+ +   T+    +++    L    
Sbjct: 6   GKRPSGRAPDENRIVSIETGFARHAEGSALIRVGGTEVLCTATI----EDRVPPFLRNKG 61

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT    +     G  S R     RL  R++   +        T+ + 
Sbjct: 62  QGWITAEYGMLPRATHSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLD 121

Query: 427 SEITESDGSSSMATVCGSSLAL------MDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
            ++  +DG +  A++ G+ +AL            ++  VA ++ GL   G     + D+ 
Sbjct: 122 CDVLNADGGTRCASITGAWVALSLALKKAKRSQALTAQVAAVSCGLTDAG----AVLDLD 177

Query: 481 GDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             ED     D     T D GI  +Q   +     E+     L+ AK G   +    +K 
Sbjct: 178 YVEDSSAQADTNFVLTADGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKA 236



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 25/229 (10%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERT 67
            R + +ETG  AR ++G+ L   G T VL T   +  +       GQ +  +T  Y    
Sbjct: 17  NRIVSIETG-FARHAEGSALIRVGGTEVLCTATIEDRVPPFLRNKGQGW--ITAEYGMLP 73

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
            A     G     + + +     I R+I RS+R         E  +    +V+  D    
Sbjct: 74  RAT-HSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLDCDVLNADGG-- 130

Query: 126 PHVVSMVAASAALMLSGLP------FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDL 176
               S+  A  AL L+             V        +   VL+    ED   Q   + 
Sbjct: 131 TRCASITGAWVALSLALKKAKRSQALTAQVAAVSCGLTDAGAVLDLDYVEDSSAQADTNF 190

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
            ++     ++ ++  A      E    + +         + EA +K  +
Sbjct: 191 VLTA-DGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKALE 238


>gi|320106016|ref|YP_004181606.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
 gi|319924537|gb|ADV81612.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
          Length = 246

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 24/250 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            ++  R  GR +  +R I      +    GS L   G+T+ +   T+           L 
Sbjct: 5   SEELFRPGGRTAAQLRSIKLTPDYVATAEGSVLIEAGNTRVLCNATIEPS----VPGWLR 60

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            + +      Y+ LP AT   +      G    R     RL  R++  V+   A     +
Sbjct: 61  NSGKGWVTAEYSMLPRATLTRTPRESERGKIGGRTHEIQRLIGRSLRSVVDLKALGERMI 120

Query: 424 RIVSEITESDGSSSMATVCGSSLAL---MDAGV--------PISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A + G+ +AL   +D  V        P+ + VA  ++G+V    D
Sbjct: 121 ILDCDVLQADGGTRTAAITGACVALAMALDKLVAAGTLPVSPLKQLVAATSVGIV----D 176

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             IL D++ +ED    +D  V  T+  G+  +Q   +    +   +   L  A  G  ++
Sbjct: 177 GNILLDLAYEEDSRADVDMNVVMTEDGGLVEVQATAEHNTYTRPQLDALLDIAASGVKNL 236

Query: 532 LNEMSKVLSE 541
           L     VL +
Sbjct: 237 LVHQRSVLKK 246



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 24/202 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +KL    +A  ++G+VL   G T VL     + S+           +T  Y     A 
Sbjct: 20  RSIKLTPDYVAT-AEGSVLIEAGNTRVLCNATIEPSVPGWLRNSGKGWVTAEYSMLPRAT 78

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
             + P    R   +       I R+I RS+R +       E  +I   +V+Q D      
Sbjct: 79  LTRTPRESER--GKIGGRTHEIQRLIGRSLRSVVDLKALGERMIILDCDVLQADGG--TR 134

Query: 128 VVSMVAASAALMLS-GL----------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD 175
             ++  A  AL ++             P +  V    V  ++G  +L+   +ED +  +D
Sbjct: 135 TAAITGACVALAMALDKLVAAGTLPVSPLKQLVAATSVGIVDGNILLDLAYEEDSRADVD 194

Query: 176 LFVSGTQD-AVLMVELEANQLS 196
           + V  T+D  ++ V+  A   +
Sbjct: 195 MNVVMTEDGGLVEVQATAEHNT 216


>gi|82523716|emb|CAI78497.1| hypothetical protein [uncultured beta proteobacterium]
          Length = 243

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R +S   G  +   GS L   GDT+ +   ++     ++      G+   
Sbjct: 6   RPSGRAPDALRTLSFTRGFTKHAEGSVLVSMGDTRVLCTASV----LDKIPPHKKGSGEG 61

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  S R     RL  R++  V+        TL I  +
Sbjct: 62  WVTAEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCD 121

Query: 429 ITESDGSSSMATVCG-------SSLALMDAG----VPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++CG       +   L+  G     P++  +A +++G+     +   + 
Sbjct: 122 VLQADGGTRCASICGAYVAVADAVAGLLREGKLAETPLNDSIAAVSVGVY----EGHPVL 177

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T S GI  +Q   +    S   +   +  A  G + I     
Sbjct: 178 DLDYIEDFECDTDMNVVMTGSGGIVEIQGTAEGVPFSRATLDALVDLAAAGIVQISTAQQ 237

Query: 537 KV 538
             
Sbjct: 238 AA 239



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 26/232 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAV 70
           R L    G   + ++G+VL + G+T VL T  V D+    K G     +T  Y     + 
Sbjct: 16  RTLSFTRG-FTKHAEGSVLVSMGDTRVLCTASVLDKIPPHKKGSGEGWVTAEYGMLPRST 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                       + +     I R+I RS+R +    K  +    +  +V+Q D       
Sbjct: 75  -HTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQADGG--TRC 131

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A+            L+  P    +    V    G  VL+    ED      +
Sbjct: 132 ASICGAYVAVADAVAGLLREGKLAETPLNDSIAAVSVGVYEGHPVLDLDYIEDFECDTDM 191

Query: 175 DLFVSGTQDAVLMVELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           ++ ++G+   ++ ++  A  +  S   +   +         +  A     K 
Sbjct: 192 NVVMTGS-GGIVEIQGTAEGVPFSRATLDALVDLAAAGIVQISTAQQAALKA 242


>gi|256396655|ref|YP_003118219.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
 gi|256362881|gb|ACU76378.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
          Length = 243

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 18/216 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R ++          GS L   G T+ +   ++     E     L G+ + 
Sbjct: 5   RVDGRKVGQLRPVTLTRKWSIHPEGSVLVEFGQTKVLCTASVT----EGVPRWLRGSGKG 60

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  RA+  V+   A    T+ +  +
Sbjct: 61  WVTAEYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRALRAVVDTKALGENTIIVDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISK---------PVAGIAMGLVKDGDDFIILSDI 479
           + ++DG +  A + G+ +AL DA   +           P+AG    +     D + + D+
Sbjct: 121 VLQADGGTRTAAITGAYVALQDAVTWMRDKKMIKASREPLAGSVSAVSVGIIDGVPMLDL 180

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
             +ED     D  V  T  G    +Q   +      
Sbjct: 181 CYEEDVRAETDMNVVCTADGKFVEVQGTAEGAPFDR 216



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 22/175 (12%)

Query: 29  GAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G+T VL T  V +   +   G     +T  Y     A     G     + +  
Sbjct: 29  GSVLVEFGQTKVLCTASVTEGVPRWLRGSGKGWVTAEYAMLPRATN-TRGDRESVKGKVG 87

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I R++R +       E  +I   +V+Q D        ++  A  AL     
Sbjct: 88  GRTQEISRLIGRALRAVVDTKALGENTIIVDCDVLQADGG--TRTAAITGAYVALQDAVT 145

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
                     S  P  G V    V  I+G  +L+   +ED +   D+ V  T D 
Sbjct: 146 WMRDKKMIKASREPLAGSVSAVSVGIIDGVPMLDLCYEEDVRAETDMNVVCTADG 200


>gi|154500957|ref|ZP_02038995.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
 gi|150269981|gb|EDM97500.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 25/242 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR ++ +R I    G+ +   GS L   G+T  +   ++    +++    +      
Sbjct: 3   RIDGRANDQLRPIEIIPGINKFAEGSCLIRCGNTHVLCTASV----EDRVPPHV-PEGEG 57

Query: 373 DFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP A  E S+        S R     RL  R++   +   A  P T+ +  +
Sbjct: 58  WVTAEYSMLPRANRERSKRDIAKLKLSARSAEIQRLVGRSLRAAVDMKALGPRTITVDCD 117

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           + + DG +  A+V G  +AL           +   +P+   VA I+ G+V D     +L 
Sbjct: 118 VLQGDGGTRTASVTGGFVALSFALHKLVEEGVLEAMPLKTCVAAISAGIVDDQ----LLL 173

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D     T  G +  +Q   +    +       ++   +G   +     
Sbjct: 174 DLCYEEDSSAQVDLNCVMTGEGELVELQGTGEGRSFTLEEQRALVELCAKGIRDVQAVQK 233

Query: 537 KV 538
            V
Sbjct: 234 AV 235



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 77/229 (33%), Gaps = 31/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-----LTVNYQERTY 68
           RP+++  G I + ++G+ L   G T VL T   +  +       P     +T  Y     
Sbjct: 13  RPIEIIPG-INKFAEGSCLIRCGNTHVLCTASVEDRVPPHV---PEGEGWVTAEYSMLPR 68

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK---CYKNETQVIINVMQHDLESS 125
           A  +     + +  + +     I R++ RS+R          +    V  +V+Q D    
Sbjct: 69  ANRERSKRDIAK-LKLSARSAEIQRLVGRSLRAAVDMKALGPRT-ITVDCDVLQGDGG-- 124

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-- 172
               S+     AL            L  +P +  V       ++ Q +L+   +ED    
Sbjct: 125 TRTASVTGGFVALSFALHKLVEEGVLEAMPLKTCVAAISAGIVDDQLLLDLCYEEDSSAQ 184

Query: 173 -SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
             L+  ++G  + V L    E    + +     +       + V     
Sbjct: 185 VDLNCVMTGEGELVELQGTGEGRSFTLEEQRALVELCAKGIRDVQAVQK 233


>gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
 gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
          Length = 244

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M    +R+  R +  +R+I+      +   GS L   GDT+ I   ++           L
Sbjct: 1   MSVNSMRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNG----VPPFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYT 422
               +      Y  LP +T E  +  A       R     RL  R++   +  TA    T
Sbjct: 57  KDKGQGWVTAEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A + G  +AL D           A  P  + VA +++G++    
Sbjct: 117 ITIDCDVIQADGGTRTAAITGGCVALHDALQYLTEKKQLATNPFQQFVASVSVGIINGEP 176

Query: 472 DFIILSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D+   ED     D  V  T   G   +Q   +     ++ +   L  AK+G   
Sbjct: 177 ----MLDLDYQEDSNADTDMNVVMTEQGGFIEVQGTAEKTVFQQSELDALLHLAKQGITE 232

Query: 531 ILNEMSKV 538
           +     ++
Sbjct: 233 LTKMQKQI 240



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 34/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           R + + T +  + ++G+VL T+G+T V+ T      +       GQ +  +T  Y     
Sbjct: 17  REINI-TRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKGQGW--VTAEYGMLPR 73

Query: 69  AVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLE 123
           +  +     ++RE    +       I R+I RS+R          N   +  +V+Q D  
Sbjct: 74  STHER----MQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENTITIDCDVIQADGG 129

Query: 124 SSPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-Q 171
                 ++     AL            L+  PF+  V    V  ING+ +L+    ED  
Sbjct: 130 --TRTAAITGGCVALHDALQYLTEKKQLATNPFQQFVASVSVGIINGEPMLDLDYQEDSN 187

Query: 172 GSLDLFVSGTQ-DAVLMVELEANQ-LSEDVVLDAIIF-GHNECKPVIEAISKL 221
              D+ V  T+    + V+  A + + +   LDA++         + +   ++
Sbjct: 188 ADTDMNVVMTEQGGFIEVQGTAEKTVFQQSELDALLHLAKQGITELTKMQKQI 240


>gi|293374133|ref|ZP_06620467.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325837445|ref|ZP_08166427.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
 gi|292647236|gb|EFF65212.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325490977|gb|EGC93275.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
          Length = 236

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +  +R +      +    G+ L   G+T+ I   T+    + +    + G  +
Sbjct: 1   MRTNERKNNELRPVEFIPNYIMHPEGAVLISVGNTKVICTATI----ENKLPPFMRGQGK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R +   RL  R++   +        T+ I  
Sbjct: 57  GWITAEYSMLPRATNTRNVRESARGKLSGRTMEIQRLIGRSLRAAVDLEKLGERTIWIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ GS +A       L+  GV    P+ + +A I++G +KDG+   ++
Sbjct: 117 DVIQADGGTRTASITGSVVAMKLAFDKLVAEGVLKESPLKEHLAAISVG-IKDGE---VI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  +ED    +D  V  T+SG    +Q   +    S   ++  L  A +G   ++   
Sbjct: 173 LDLDYEEDSSAEVDMNVIMTESGQFVEIQGTGEEATYSHAELLQMLDVASQGIKQLIEAQ 232

Query: 536 SKV 538
            ++
Sbjct: 233 KQI 235



 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 23/213 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           GAVL + G T V+ T   +  L     GQ    +T  Y     A          R  + +
Sbjct: 26  GAVLISVGNTKVICTATIENKLPPFMRGQGKGWITAEYSMLPRATNTRNVRESAR-GKLS 84

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I RS+R      K  +    +  +V+Q D        S+  +  A+ L+  
Sbjct: 85  GRTMEIQRLIGRSLRAAVDLEKLGERTIWIDCDVIQADGG--TRTASITGSVVAMKLAFD 142

Query: 142 ---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGTQDA-VLMVEL 190
                      P +  +    V   +G+ +L+   +ED    +D+ V  T+    + ++ 
Sbjct: 143 KLVAEGVLKESPLKEHLAAISVGIKDGEVILDLDYEEDSSAEVDMNVIMTESGQFVEIQG 202

Query: 191 EANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
              + +     +L  +       K +IEA  ++
Sbjct: 203 TGEEATYSHAELLQMLDVASQGIKQLIEAQKQI 235


>gi|75908883|ref|YP_323179.1| ribonuclease PH [Anabaena variabilis ATCC 29413]
 gi|123609297|sp|Q3M9Q2|RNPH_ANAVT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|75702608|gb|ABA22284.1| RNAse PH [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 22/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+      +   GS L I G+T+ +  V++     E     L+G+ + 
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVA----ESVPKFLAGSGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQQRHERELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A + G  +AL +              P+   VA +++GL++         D+
Sbjct: 121 QADAGTRTAAITGGFVALAEAISQLLQRGVLERSPLCGQVAAVSVGLLEQE----AYLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V    + GI  +Q   + G  S   +   L  A+ G   +L    K 
Sbjct: 177 NYIEDVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKA 236

Query: 539 LSE 541
           +++
Sbjct: 237 ITD 239



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 26/228 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+   T +  R + G+VL   GET VL TV V +   K   G     LT  Y+    A 
Sbjct: 15  RPINFHT-KFTRFAPGSVLTICGETKVLCTVSVAESVPKFLAGSGKGWLTAEYRMLPSA- 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                 + R   + +     I R+I RS+R    F    +    V  +V+Q D       
Sbjct: 73  --TQQRHERELLKLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQADAG--TRT 128

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            ++     AL   +S L         P  G V    V  +  +  L+    ++   ++D 
Sbjct: 129 AAITGGFVALAEAISQLLQRGVLERSPLCGQVAAVSVGLLEQEAYLDLNYIEDVAATVDF 188

Query: 177 FVSGTQD-AVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            V   ++  ++ V+  A +   S   +   +       + ++ A  K 
Sbjct: 189 NVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKA 236


>gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705]
 gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
 gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705]
 gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8]
 gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
 gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68]
          Length = 258

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG----VPRWRKDSGL 73

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 74  GWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDC 133

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL+D          +      +   V+ +++G++    +  
Sbjct: 134 DVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVI----NGT 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 190 PMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 249

Query: 534 EMSKVLS 540
                LS
Sbjct: 250 AQRAALS 256



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 43  GSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 101

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL     
Sbjct: 102 GRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGG--TRTASVTGAYVALVDAVN 159

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LM 187
                      S +  +  V    V  ING  +L+ P +++ Q   D+ V+ T     + 
Sbjct: 160 WAEKHRHIKSASRV-LKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIE 218

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 219 IQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQ 251


>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
 gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
          Length = 246

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAK---- 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                  +     Y+    +T E        R+ +      ++A+   +         + 
Sbjct: 61  --GNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFEE 175

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   T   I  ++M  +        ++       R    IL 
Sbjct: 176 VSGGPKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILE 226



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q DG+     G T VLA V      K  Q    +   Y + T++  +      +   R  
Sbjct: 35  QPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAE-----RKNRPRGD 89

Query: 86  ENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
              +     + +++          +++  + + V+Q D  +    V++ AA+ AL+ +G+
Sbjct: 90  RKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYA--VALNAATLALIDAGI 147

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQDAVLMVELEANQLSE-- 197
                +V            L      ++ S    L +    T + +  +E+      +  
Sbjct: 148 CLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPTAEKIAFLEMSERFHIDHL 207

Query: 198 DVVLDAIIFGHNECKPVIEA 217
           + V++  + G  E + ++EA
Sbjct: 208 ETVIETAMAGCREIRDILEA 227


>gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 258

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG----VPRWRKDSGL 73

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 74  GWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDC 133

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL+D          +      +   V+ +++G++    +  
Sbjct: 134 DVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVI----NGT 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 190 PMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 249

Query: 534 EMSKVLS 540
                LS
Sbjct: 250 AQRAALS 256



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 43  GSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 101

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL     
Sbjct: 102 GRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGG--TRTASVTGAYVALVDAVN 159

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LM 187
                      S +  +  V    V  ING  +L+ P +++ Q   D+ V+ T     + 
Sbjct: 160 WAEKHRHIKSASRV-LKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIE 218

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 219 IQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQ 251


>gi|307294011|ref|ZP_07573855.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
 gi|306880162|gb|EFN11379.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
          Length = 238

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 24/219 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R+I+ + G      GS L   GDT+ +   ++    +E+    L G   
Sbjct: 1   MRPSGRAPDQMREITMEPGFTIHAEGSCLISFGDTRVLCTASI----EEKVPPFLRGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+         + +  
Sbjct: 57  GWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +AL                PI + VA I+ G+ K       +
Sbjct: 117 DVIQADGGTRTAAISGSWVALRIAVDKLLASGALKEDPIVQKVAAISCGIYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
            D+   ED     D  +  T  G    ++     G + +
Sbjct: 173 LDLDYAEDSNAEADANLILTGDG-KFAEVQATAEGATYD 210



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 23/186 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E G     ++G+ L ++G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  REITMEPG-FTIHAEGSCLISFGDTRVLCTASIEEKVPPFLRGKGSGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q++   +V+Q D       
Sbjct: 71  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  +  AL +       SG     P    V         G  VL+    ED   +   
Sbjct: 128 AAISGSWVALRIAVDKLLASGALKEDPIVQKVAAISCGIYKGTPVLDLDYAEDSNAEADA 187

Query: 175 DLFVSG 180
           +L ++G
Sbjct: 188 NLILTG 193


>gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F]
 gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217]
 gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
           157F]
          Length = 254

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 14  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG----VPRWRKDSGL 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 70  GWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL+D          +      +   V+ +++G++    +  
Sbjct: 130 DVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVI----NGT 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 186 PMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 245

Query: 534 EMSKVLS 540
                LS
Sbjct: 246 AQRAALS 252



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL     
Sbjct: 98  GRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGG--TRTASVTGAYVALVDAVN 155

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LM 187
                      S +  +  V    V  ING  +L+ P +++ Q   D+ V+ T     + 
Sbjct: 156 WAEKHRHIKSASRV-LKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIE 214

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 215 IQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQ 247


>gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 254

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 14  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG----VPRWRKDSGL 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 70  GWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL+D          +      +   V+ +++G++    +  
Sbjct: 130 DVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVI----NGT 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 186 PMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 245

Query: 534 EMSKVLS 540
                LS
Sbjct: 246 AQRAALS 252



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL     
Sbjct: 98  GRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGG--TRTASVTGAYVALVDAVN 155

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LM 187
                      S +  +  V    V  ING  +L+ P +++ Q   D+ V+ T     + 
Sbjct: 156 WAEKHRHIKSASRV-LKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIE 214

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 215 IQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQ 247


>gi|163856581|ref|YP_001630879.1| ribonuclease PH [Bordetella petrii DSM 12804]
 gi|163260309|emb|CAP42611.1| ribonuclease PH [Bordetella petrii]
          Length = 246

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R  S Q G  +   GS L   G+T  +   ++     ++    L G    
Sbjct: 11  RPSGRAVDQLRPFSLQRGYTRYAEGSVLVRAGNTHVLCTASV----LDKVPPFLKGRGEG 66

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G  S R     RL  R++  V    A    TL +  +
Sbjct: 67  WVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCD 126

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       LM  G     PI   VA +++G+V        + 
Sbjct: 127 VLQADGGTRCASITGAWVAAADAVALLMQRGDLAANPIRDAVAAVSVGMV----AGRPVL 182

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V  T +G    +Q   +    + + +   L  A++G   ++    
Sbjct: 183 DLDYQEDSACDADVNVVMTGAGAFVEVQGTGEGATFARSELDAMLGLAEQGIAQLVRAQR 242

Query: 537 KV 538
           + 
Sbjct: 243 EA 244



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP  L+ G   R ++G+VL   G T VL T      +     G+    +T  Y     A 
Sbjct: 21  RPFSLQRG-YTRYAEGSVLVRAGNTHVLCTASVLDKVPPFLKGRGEGWVTAEYGMLPRAT 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
               G       + +     I R+I RS+R +F      E    +  +V+Q D       
Sbjct: 80  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQADGG--TRC 136

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  A             L+  P    V    V  + G+ VL+    ED      +
Sbjct: 137 ASITGAWVAAADAVALLMQRGDLAANPIRDAVAAVSVGMVAGRPVLDLDYQEDSACDADV 196

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ ++G   A + V+      +     +   +         ++ A  +   
Sbjct: 197 NVVMTG-AGAFVEVQGTGEGATFARSELDAMLGLAEQGIAQLVRAQREALA 246


>gi|254409968|ref|ZP_05023748.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
 gi|196183004|gb|EDX77988.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
          Length = 238

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 22/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R    +R IS   G  +    S L   GDTQ +  VT+           L GT   
Sbjct: 5   RPDHRQPNQLRPISFVRGFTKFAPASVLTKCGDTQVLCNVTIQPG----IPRFLEGTGSG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   +  TA    T+ + +++ 
Sbjct: 61  WLTAEYRMLPGATPQRQTRELLKLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A++ G  +AL +              PI   +A +++GL+          D+
Sbjct: 121 QADAGTRTASITGGYVALAEALDKLVQAGELERSPIRHQIAAVSVGLLAGEP----FLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +ED     DF +   D   I  +Q   +    S   +   +  A+ G   +L+     
Sbjct: 177 KYEEDVAAQTDFNIVMNDELNIIEIQGTAEAESFSRTQLNQLIDLAETGIQELLDAQRHA 236

Query: 539 LS 540
           LS
Sbjct: 237 LS 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 36/230 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+    G   + +  +VL   G+T VL  V     ++ G   F        LT  Y+  
Sbjct: 15  RPISFVRG-FTKFAPASVLTKCGDTQVLCNVT----IQPGIPRFLEGTGSGWLTAEYRML 69

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLES 124
               G  P    R   + +     I R+I RS+R         E    V  +V+Q D   
Sbjct: 70  P---GATPQRQTRELLKLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVLQADAG- 125

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                S+     AL            L   P    +    V  + G+  L+ + +ED   
Sbjct: 126 -TRTASITGGYVALAEALDKLVQAGELERSPIRHQIAAVSVGLLAGEPFLDLKYEEDVAA 184

Query: 171 QGSLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
           Q   ++ ++  +  ++ ++   EA   S   +   I       + +++A 
Sbjct: 185 QTDFNIVMN-DELNIIEIQGTAEAESFSRTQLNQLIDLAETGIQELLDAQ 233


>gi|38234421|ref|NP_940188.1| ribonuclease PH [Corynebacterium diphtheriae NCTC 13129]
 gi|61215954|sp|Q6NFN6|RNPH_CORDI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|38200684|emb|CAE50380.1| Putative ribonuclease PH [Corynebacterium diphtheriae]
          Length = 241

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 86/245 (35%), Gaps = 15/245 (6%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R DGR  + +R +    G      GS L   G+T+ +   ++    +        
Sbjct: 1   MTDFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASV----ELGVPRFKR 56

Query: 368 GTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +        Y  LP AT E     S  G    R     RL  R++   +        T+
Sbjct: 57  DSGEGWLTAEYAMLPAATAERNARESMRGKVKGRTHEISRLIGRSLRAAVDLDELGENTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISK-------PVAGIAMGLVKDGDDFIIL 476
            I  ++ ++DG +  A++ G+ +AL DA   + +       P+      +     D  + 
Sbjct: 117 NIDCDVLQADGGTRTASITGAYVALADAIAVLKEQGVVPGNPLKAAVAAVSVGVIDGQVC 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            D+  +ED    +D  V         +Q   +      + + + L  A++G   +     
Sbjct: 177 LDLPYEEDSRADVDMNVIMQGDRFVEIQGTGEHNTFDRDELAVILDFAQKGCQELFAAQK 236

Query: 537 KVLSE 541
             L +
Sbjct: 237 AALEQ 241



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 23/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAV 70
           R +K+  G  +  + G+VL  +G T V+ T  V     +  +D     LT  Y     A 
Sbjct: 16  RTVKITRGFTSNPA-GSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTAEYAMLPAAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            +       R  +       ISR+I RS+R      +  +N   +  +V+Q D       
Sbjct: 75  AERNARESMR-GKVKGRTHEISRLIGRSLRAAVDLDELGENTINIDCDVLQADGG--TRT 131

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDL 176
            S+  A  AL  +           G P +  V    V  I+GQ  L+ P  ++ +  +D+
Sbjct: 132 ASITGAYVALADAIAVLKEQGVVPGNPLKAAVAAVSVGVIDGQVCLDLPYEEDSRADVDM 191

Query: 177 FVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKM 224
            V    D  + ++      +   D +   + F    C+ +  A     + 
Sbjct: 192 NVIMQGDRFVEIQGTGEHNTFDRDELAVILDFAQKGCQELFAAQKAALEQ 241


>gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037]
 gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037]
          Length = 241

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 90/244 (36%), Gaps = 26/244 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R ++ + G      GS+L   G T+ +   +            L+G  + 
Sbjct: 3   RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNG----VPRWLTGKGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G    R     RL  RA+  V+   A    T+ I  +
Sbjct: 59  WVTAEYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA---GVPIS----------KPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA   G                V+ +++G++    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGII----DGEP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D++  ED     D  V  T  G    +Q   +     +  +   L  A  G   +   
Sbjct: 175 MLDLAYVEDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGCAELRGI 234

Query: 535 MSKV 538
            +  
Sbjct: 235 QTAA 238



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 25/189 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +E G  A  ++G+ L T+G T VL T  +   +     G+    +T  Y     A 
Sbjct: 13  RPVTIERGWSAH-AEGSALITFGGTKVLCTASFTNGVPRWLTGKGKGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  +       ISR+I R++R +       E  ++   +V+Q D       
Sbjct: 72  NSRNDRESIK-GKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALMLS-----GLPF--------EGPVVGAQVDYINGQYVLNPRLDED---QG 172
            ++  A  AL  +        F           V    V  I+G+ +L+    ED   + 
Sbjct: 129 AAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPMLDLAYVEDVRAET 188

Query: 173 SLDLFVSGT 181
            +++ V+G 
Sbjct: 189 DMNVVVTGR 197


>gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54]
 gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54]
          Length = 236

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 22/236 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R +E++R IS + G+      S L   G+T  I  V++    +E     + G+ +
Sbjct: 3   MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSV----EESVPPFMRGSGK 58

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LPCAT    R     R  R +   RL  R++  ++        TLR+  ++
Sbjct: 59  GWITAEYGMLPCATDSRYRRETNGRSGRTMEIQRLIGRSLRMMVDLETIGERTLRVDCDV 118

Query: 430 TESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSD 478
             +DG +  A++ G +LAL DA            +P   PV  I++G+     D   L D
Sbjct: 119 LNADGGTRTASITGGALALRDAFTKLHTTGLLEKMPEIMPVVAISVGM----KDGQALLD 174

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +   ED     D        G    +Q   +    S +  +     A++G   +L 
Sbjct: 175 LDYVEDSSADADANFVMAGDGRWIEVQSTAEGRPFSHDQFLAMADLAQKGSAELLQ 230



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 30/226 (13%)

Query: 14  RPLKLETGRIARQ--SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTY 68
           RP+ +E G    Q  +D +VL   G T V+  V  + S+     G     +T  Y     
Sbjct: 14  RPISIERGV---QLHADASVLIRMGNTHVICGVSVEESVPPFMRGSGKGWITAEYGMLPC 70

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSP 126
           A       Y R  +  +   + I R+I RS+R +       E   +V  +V+  D     
Sbjct: 71  A---TDSRYRRETNGRSGRTMEIQRLIGRSLRMMVDLETIGERTLRVDCDVLNADGG--T 125

Query: 127 HVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG--- 172
              S+   + AL           +L  +P   PVV   V   +GQ +L+    ED     
Sbjct: 126 RTASITGGALALRDAFTKLHTTGLLEKMPEIMPVVAISVGMKDGQALLDLDYVEDSSADA 185

Query: 173 SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
             +  ++G    + +    E    S D  L            +++ 
Sbjct: 186 DANFVMAGDGRWIEVQSTAEGRPFSHDQFLAMADLAQKGSAELLQL 231


>gi|24584046|ref|NP_609618.2| Ski6 [Drosophila melanogaster]
 gi|7298022|gb|AAF53263.1| Ski6 [Drosophila melanogaster]
 gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
          Length = 246

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAK---- 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                  +     Y+    +T E        R+ +      ++A+   +         + 
Sbjct: 61  --GNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFEE 175

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   T   I  ++M  +        ++       R    IL 
Sbjct: 176 VSGGPKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILE 226



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q DG+     G T VLA V      K  Q    +   Y + T++  +      +   R  
Sbjct: 35  QPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAE-----RKNRPRGD 89

Query: 86  ENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
              +     + +++          +++  + + V+Q D  +    V++ AA+ AL+ +G+
Sbjct: 90  RKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYA--VALNAATLALIDAGI 147

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQDAVLMVELEANQLSE-- 197
                +V            L      ++ S    L +    T + +  +E+      +  
Sbjct: 148 CLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPTAEKIAFLEMSERFHIDHL 207

Query: 198 DVVLDAIIFGHNECKPVIEA 217
           + V++  + G  E + ++EA
Sbjct: 208 ETVIETAMAGCREIRDILEA 227


>gi|51891481|ref|YP_074172.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
 gi|61215887|sp|Q67SL5|RNPH_SYMTH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|51855170|dbj|BAD39328.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
          Length = 273

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 24/219 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +           GS L   G T+ I   TL    +++    L G   
Sbjct: 1   MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATL----EDRVPPFLRGRGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATG+ +      G    R +   RL  RA+  V+   A    TL I  
Sbjct: 57  GWITAEYGMLPRATGQRTAREAARGRQGGRTMEIQRLIGRALRSVIDLAALGERTLIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A++DA            +P+   +A  ++G+V      + +
Sbjct: 117 DVIQADGGTRTASITGAYVAMVDALAGLRAAGLIDRLPVKDYLAATSVGVVG----GVPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
            D++ +ED    +D  +  T SG +  +Q   +    + 
Sbjct: 173 LDLTYEEDSRAAVDLNLVMTGSGEVVEIQGTGEERPFTR 211



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 19/185 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T   +  +     G+    +T  Y     A G+       R  R
Sbjct: 24  AEGSVLIEVGRTRVICTATLEDRVPPFLRGRGEGWITAEYGMLPRATGQRTAREAAR-GR 82

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH---------VVSMV 132
                + I R+I R++R +       E  +I   +V+Q D  +            V ++ 
Sbjct: 83  QGGRTMEIQRLIGRALRSVIDLAALGERTLIIDCDVIQADGGTRTASITGAYVAMVDALA 142

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
              AA ++  LP +  +    V  + G  VL+   +ED      L+L ++G+ + V+ ++
Sbjct: 143 GLRAAGLIDRLPVKDYLAATSVGVVGGVPVLDLTYEEDSRAAVDLNLVMTGSGE-VVEIQ 201

Query: 190 LEANQ 194
               +
Sbjct: 202 GTGEE 206


>gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A]
 gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A]
 gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A]
          Length = 258

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG----VPRWRKDSGL 73

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 74  GWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDC 133

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL+D          +      +   V+ +++G++    +  
Sbjct: 134 DVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVI----NGT 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 190 PMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 249

Query: 534 EMSKVLS 540
                LS
Sbjct: 250 AQRAALS 256



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 43  GSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 101

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL     
Sbjct: 102 GRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGG--TRTASVTGAYVALVDAVN 159

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LM 187
                      S +  +  V    V  ING  +L+ P +++ Q   D+ V+ T     + 
Sbjct: 160 WAEKHRHIKSASRV-LKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIE 218

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 219 IQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQ 251


>gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101]
 gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101]
          Length = 238

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 22/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR S  +R IS ++   +    S L   G+T+ +  VT+           L+ T + 
Sbjct: 5   RPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPG----VPKFLADTGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E  +      S R     RL  R++   L        T+ + +++ 
Sbjct: 61  WLTAEYRMLPAATSERQQREFMKLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVL 120

Query: 431 ESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +A       L+D G     PI   VA +++GL++         D+
Sbjct: 121 QADAGTRTVSITGGFVAVANAISKLIDQGKLERSPILHQVAAVSVGLLEKEP----YLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V   D   +  +Q   +IG  S   +   L  A+ G   + +   +V
Sbjct: 177 NYPEDVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQV 236

Query: 539 LS 540
           +S
Sbjct: 237 IS 238



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 81/230 (35%), Gaps = 30/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+  E     + +  +VL  +GET VL  V     ++ G   F        LT  Y+  
Sbjct: 15  RPISFEL-DYTKFATSSVLTKFGETKVLCNVT----IQPGVPKFLADTGQGWLTAEYRML 69

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
             A  +      R   + +     I R+I RS+R         E  +I   +V+Q D  +
Sbjct: 70  PAATSE---RQQREFMKLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQADAGT 126

Query: 125 SPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
               ++    + A  +S L         P    V    V  +  +  L+    ED    +
Sbjct: 127 RTVSITGGFVAVANAISKLIDQGKLERSPILHQVAAVSVGLLEKEPYLDLNYPEDVAAEI 186

Query: 175 DL-FVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           D   V   Q A++ V+  A     S   +   +       K + +A  ++
Sbjct: 187 DFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQV 236


>gi|238897732|ref|YP_002923411.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259494122|sp|C4K3X0|RNPH_HAMD5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229465489|gb|ACQ67263.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 241

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 19/245 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R ++      +   G+ L   G+T+ +   T+    +E     L G  +
Sbjct: 1   MRPSGRTAQQLRPLTFTRHYTKYAEGAVLVEFGETRVLCTATV----EEGVPRFLKGQNK 56

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T +     S  G    R +   RL  RA+   +  T    +T+++  
Sbjct: 57  GWITAEYSMLPRSTHQRHARESVKGKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPIS-------KPVAGIAMGLVKDGDDFIILSDIS 480
           ++ ++DG +  A + G+ +AL DA   +         P+ G+   +         + D+ 
Sbjct: 117 DVLQADGGTRTAAITGACVALQDALQKMRVEGKLKSNPMKGLVAAVSVGVVGGESICDLE 176

Query: 481 GDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
             ED +   D  V   + G    I  +Q   +    S   ++  L  A  G   I     
Sbjct: 177 YIEDAIAETDMNVVMIEEGAGRKIIEIQGTAEGAPFSHQQLLELLALADDGIKTIFQAQK 236

Query: 537 KVLSE 541
           KVL +
Sbjct: 237 KVLEK 241



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RPL   T    + ++GAVL  +GET VL T   +  +     GQ+   +T  Y     + 
Sbjct: 12  RPLTF-TRHYTKYAEGAVLVEFGETRVLCTATVEEGVPRFLKGQNKGWITAEYSMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHV 128
            +       +  +     + I R+I R++R         E  +    +V+Q D       
Sbjct: 71  HQRHARESVK-GKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDCDVLQADGG--TRT 127

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMV 188
            ++  A  AL              Q   + G+   NP                 +++  +
Sbjct: 128 AAITGACVALQD----------ALQKMRVEGKLKSNPMKGLVAAVS--VGVVGGESICDL 175

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           E   + ++E  + + ++      + +IE  
Sbjct: 176 EYIEDAIAETDM-NVVMIEEGAGRKIIEIQ 204


>gi|328953246|ref|YP_004370580.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
 gi|328453570|gb|AEB09399.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
          Length = 255

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R +GR  + +R +      L +  G+ L   G T  I   T+    +E+    L  + +
Sbjct: 12  IRSEGRRLDELRQVKITPRYLSQAEGAVLISLGRTWVICTATV----EERVPAFLQDSGQ 67

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT          G PS R     RL  R++  V+   A    T+ +  
Sbjct: 68  GWVTAEYDMLPRATHSRHPRSANLGKPSSRSQEIQRLIGRSLRAVVDLDALGERTIVLDC 127

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL +           A +P+   VA +++GL  D     IL
Sbjct: 128 DVIQADGGTRTAAITGAFVALCEALAGLQRQEIIATLPVLDQVAAVSVGLANDQ----IL 183

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D     T  G +  +Q   + G     +++  L++A+     +    
Sbjct: 184 VDLDYQEDSRAEVDANFVVTGRGQLVEVQATGERGPFRPALLLEMLERAQPALQRLRQAQ 243

Query: 536 SKV 538
            K 
Sbjct: 244 EKA 246



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R +K+ T R   Q++GAVL + G T V+ T                   +T  Y     A
Sbjct: 23  RQVKI-TPRYLSQAEGAVLISLGRTWVICTATV-EERVPAFLQDSGQGWVTAEYDMLPRA 80

Query: 70  V-GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
              + P        +P+     I R+I RS+R +       E  ++   +V+Q D     
Sbjct: 81  THSRHPRSANL--GKPSSRSQEIQRLIGRSLRAVVDLDALGERTIVLDCDVIQADGG--T 136

Query: 127 HVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
              ++  A  AL            ++ LP    V    V   N Q +++    ED   + 
Sbjct: 137 RTAAITGAFVALCEALAGLQRQEIIATLPVLDQVAAVSVGLANDQILVDLDYQEDSRAEV 196

Query: 173 SLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +  V+G    V +    E       ++L+ +       + + +A  K 
Sbjct: 197 DANFVVTGRGQLVEVQATGERGPFRPALLLEMLERAQPALQRLRQAQEKA 246


>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
 gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
 gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16]
          Length = 240

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +++ +   RMDGR    +R+I+ ++GL +   GS     G+T+ +  V  G  E +    
Sbjct: 2   SIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYESKA--- 57

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S     R   +  Y+    +  E        R+     RL  +A   V+   +     + 
Sbjct: 58  SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DGS+  A V  +SLAL DAG+P+    +    G+V    +   + D++  E+
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIV----ETKPIVDLTSREE 173

Query: 485 HLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
                 +          +  +++  ++     ++++ A +     
Sbjct: 174 TDLLPRVTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCAD 218



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R ++G+    +G T VL  V      K     +D   +   Y     +     G   +  
Sbjct: 30  RNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVCQY-----STTTFSGLERKNR 84

Query: 82  SRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            R       ISR+++++   +       +++  +   V+Q D  +      + A S AL 
Sbjct: 85  PRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSNLA--ACVNATSLALA 142

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGT---QDAVLMVELE 191
            +G+P +G    A    +  + +++    E+   L      T   +D V++VEL+
Sbjct: 143 DAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPRVTLATICGRDEVILVELQ 197


>gi|15838106|ref|NP_298794.1| ribonuclease PH [Xylella fastidiosa 9a5c]
 gi|21759420|sp|Q9PD74|RNPH_XYLFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|9106537|gb|AAF84314.1|AE003980_6 ribonuclease PH [Xylella fastidiosa 9a5c]
          Length = 241

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +        GS L   G+T  +   ++    + +    L      
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASV----EAKVPVFLRNKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  + R +   RL  RA+   + +TA    T+ +  +
Sbjct: 61  WVTAEYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+D              P+   VA +++G+       + + 
Sbjct: 121 VLQADGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGAVAAVSVGIY----RGMPVL 176

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G+  +Q   +        + M L  A+RG   + +   
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQR 236

Query: 537 KV 538
           + 
Sbjct: 237 EA 238



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 72/203 (35%), Gaps = 27/203 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL ++G T+V+ T   +  +           +T  Y     +             +
Sbjct: 27  AEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTAEYGMLPRST-HTRSEREAARGK 85

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL--- 138
                + I R+I R++R    +    E  +    +V+Q D        ++  A  AL   
Sbjct: 86  QAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQADGG--TRTAAITGAYVALVDA 143

Query: 139 --------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAVLM 187
                    L   P  G V    V    G  VL+   P   +    +++ ++  +  V+ 
Sbjct: 144 VRCLEQRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYPEDSDCDTDMNVVMN-DEGGVIE 202

Query: 188 VELEANQLS----EDVVLDAIIF 206
           ++  A Q +    E  +L A+  
Sbjct: 203 LQGTAEQQAFRRGELDMLLALAE 225


>gi|313668116|ref|YP_004048400.1| ribonuclease PH [Neisseria lactamica ST-640]
 gi|313005578|emb|CBN87014.1| ribonuclease PH [Neisseria lactamica 020-06]
          Length = 242

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 16/237 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
               D  +  T SG I  +Q   +    S   +   +  A++G   +L      LS 
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALSA 241



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T R    +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRR---ESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RR   E + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL +           S  P    V       +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSAGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             +++ ++ +   ++ ++  A     S + +   I         ++    
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQ 236


>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 248

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 13/242 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
             ++ ++ +R DGR    +R I   VG+L++  GS+    G  + +  V  G RE   + 
Sbjct: 10  ERLITEEGIRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAV-FGPREV--HP 66

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             +    R      YN  P +T E  R   P RR I   ++ R A+ P +         +
Sbjct: 67  KHMVLPDRALIRARYNMAPFSTPER-RRPGPDRRSIELSKVIREALKPAIFAENYPGSVI 125

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+  SD  + +A +  +SLAL  AGV +   V+  ++G V       I+ D + DE
Sbjct: 126 DIFVEVLRSDAGTRVAGINAASLALASAGVAMRGLVSACSVGRVGS----FIVVDPNHDE 181

Query: 484 DHLGHMDFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           D  G  D  +A       IT +Q D   G +SE     AL   +R    +     + L  
Sbjct: 182 DMWGDSDMPLAMMMESEEITLLQAD---GTLSEEEFKEALDLGRRAIRFVYEVQKEALKR 238

Query: 542 SR 543
             
Sbjct: 239 PY 240



 Score =  111 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 19/219 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+K+  G + + +DG+    +G   +LA V   R +       P    +   Y    ++
Sbjct: 29  RPIKMMVGVLEK-ADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALIRARYNMAPFS 87

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
                    RR   P    I +S++I  +++P         +   + + V++ D      
Sbjct: 88  ------TPERRRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVLRSDAG--TR 139

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           V  + AAS AL  +G+   G V    V  +    V++P  DED      + L +    + 
Sbjct: 140 VAGINAASLALASAGVAMRGLVSACSVGRVGSFIVVDPNHDEDMWGDSDMPLAMMMESEE 199

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           + +++ +   LSE+   +A+  G    + V E   +  K
Sbjct: 200 ITLLQADGT-LSEEEFKEALDLGRRAIRFVYEVQKEALK 237


>gi|289672870|ref|ZP_06493760.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5]
          Length = 186

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 24/192 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R I       +   GS L   GDT+ I  V++    +      L G  +
Sbjct: 2   KRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPRFLKGQGQ 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +  
Sbjct: 58  GWLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFII 475
           ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +       
Sbjct: 118 DVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP---- 173

Query: 476 LSDISGDEDHLG 487
           + D+   ED   
Sbjct: 174 VLDLDYLEDSAA 185



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 21/176 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ T    + ++G+VL  +G+T V+ TV  +  +     GQ    LT  Y     A 
Sbjct: 13  RSIRI-TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHV 128
           G+       R  +     + I R+I RS+R         +    V  +V+Q D       
Sbjct: 72  GERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGG--TRT 128

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
            S+  A  AL  +            G P +  +    V    G+ VL+    ED  
Sbjct: 129 ASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSA 184


>gi|309378698|emb|CBX22648.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 242

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 90/237 (37%), Gaps = 16/237 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASV----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALMDA-------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +AL  A       G+    P+      +       + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALHIAVGKLVSDGILTENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
               D  +  T SG I  +Q   +    S   +   +  A++G   +L      LS 
Sbjct: 185 GCDSDVNIVMTTSGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALSA 241



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 15/136 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T R    +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALMLS 141
               S+  A  AL ++
Sbjct: 128 TRTASITGAFVALHIA 143


>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
          Length = 246

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 102/236 (43%), Gaps = 11/236 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            ++ D+ +R+DGR S+ +R +  ++G       GS+    G+T+ +  V  G RE     
Sbjct: 2   ELLSDQGLRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAV-YGPREPRGGS 60

Query: 364 DS-LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               S  +     + ++    +T E  +     +R +      ++     +         
Sbjct: 61  SGDNSNKEEAILNVQFSSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQ 120

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  E+ ++DG    A+V  ++LAL+ AG+P+   V   +  L+K+      L DIS  
Sbjct: 121 IDIFVEVLQTDGGHYCASVNAATLALIHAGIPLRDYVCACSASLIKETP----LLDISML 176

Query: 483 EDHLGHMDFKVAGTDS--GITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEM 535
           E +LG  +  +A       I  ++M  +        ++  AL+  ++ R  IL+E+
Sbjct: 177 ESNLGGPELILAALPKSGEIVLLEMSQRFHMDHLEKVIDEALEGTRKIR-DILDEV 231



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 80/212 (37%), Gaps = 24/212 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQD-------FFPLTVNYQERTYAVGKIPGGYLR 79
           +DG+     G T VLA V   R  + G            L V +    ++  +      +
Sbjct: 33  ADGSAYLEMGNTKVLAAVYGPREPRGGSSGDNSNKEEAILNVQFSSAAFSTAE-----RK 87

Query: 80  RESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           +  R  +  + ++  + ++           +++  + + V+Q D        S+ AA+ A
Sbjct: 88  QRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQIDIFVEVLQTDGGHY--CASVNAATLA 145

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL---DLFVSGTQDA--VLMVELEA 192
           L+ +G+P    V       I    +L+  +   + +L   +L ++    +  ++++E+  
Sbjct: 146 LIHAGIPLRDYVCACSASLIKETPLLD--ISMLESNLGGPELILAALPKSGEIVLLEMSQ 203

Query: 193 NQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
                D +   I       + + + + ++ + 
Sbjct: 204 RFH-MDHLEKVIDEALEGTRKIRDILDEVVRD 234


>gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
          Length = 262

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 94/258 (36%), Gaps = 25/258 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR    +R +    G  +   GS L   G T+ +   ++     E        T 
Sbjct: 5   SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVT----EGVPRWRKATG 60

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G  S R     RL  R++   +   A    T+ I 
Sbjct: 61  LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAID 120

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  
Sbjct: 121 CDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGR 176

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I  D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A      +  
Sbjct: 177 IRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFA 236

Query: 534 EMSKVLSESRLQLGEFTP 551
                L+     +    P
Sbjct: 237 AQRDALALPYPGVLPQGP 254



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 24/200 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +  G       G+VL  +G T VL T                   LT  Y     A
Sbjct: 17  RPVIITRG-FTENPAGSVLIEFGHTKVLCTASVT-EGVPRWRKATGLGWLTAEYAMLPSA 74

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
                     R  R +     ISR+I RS+R          N   +  +V+Q D      
Sbjct: 75  THSRSDRESVR-GRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TR 131

Query: 128 VVSMVAA-----------SAALMLSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSL 174
             ++  A           SAA  LS   P    +    V  ++G+  ++ P  ++ +  +
Sbjct: 132 TAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEV 191

Query: 175 DLFVSGTQDAVLMVELEANQ 194
           D+ V  T    L+      +
Sbjct: 192 DMNVVATDTGTLVEIQGTGE 211


>gi|329119666|ref|ZP_08248347.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464263|gb|EGF10567.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 241

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 24/238 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R +      L    GS+L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADALRPVRITPHFLPHADGSALIECGNTRVICTASI----DENVPPFLRGQGQGWITA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP AT   SR     G  S R     RL  R++             + I  ++ ++
Sbjct: 65  EYGMLPAATATRSRREAAAGKQSGRTQEIQRLIGRSLRAAADLQKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL           + A  P+   +A ++ G+V      + L D+  
Sbjct: 125 DGGTRTASITGAYVALALAVRKLLSDGLIAENPLVSQIAAVSAGIV----GGVPLLDLDY 180

Query: 482 DEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            ED     D  +      GI  +Q   +    S   +   L+ A++G   ++ E  + 
Sbjct: 181 PEDSGCDSDVNIVMNGAGGIIEIQGTAEGAPFSPAELAALLRLAQKGIGELMAEQKRA 238



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 30/202 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ T      +DG+ L   G T V+ T   D ++     GQ    +T  Y     A 
Sbjct: 15  RPVRI-TPHFLPHADGSALIECGNTRVICTASIDENVPPFLRGQGQGWITAEYGMLPAAT 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I RS+R         E Q++   +V+Q D    
Sbjct: 74  A----TRSRREAAAGKQSGRTQEIQRLIGRSLRAAADLQKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL            ++  P    +       + G  +L+    ED    
Sbjct: 128 TRTASITGAYVALALAVRKLLSDGLIAENPLVSQIAAVSAGIVGGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEAN 193
             +++ ++G    ++ ++  A 
Sbjct: 188 SDVNIVMNG-AGGIIEIQGTAE 208


>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
 gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
          Length = 247

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 17/238 (7%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           + +  + +R+DGR +  +R I+ Q+G+  R  GS+ + +G+T+ I  V  G RE      
Sbjct: 5   SYISPEGLRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAV-YGPREI----- 58

Query: 365 SLSGT---QRNDFMMHYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQF 419
           S+SG     R      +     +T E          R       L ++A    +      
Sbjct: 59  SVSGQSIFDRAIVKCEFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYP 118

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              + I  ++ +SDG    A +  S+LAL+DAG+ +   V  ++   +    D + + D+
Sbjct: 119 RSQINIYIQVLQSDGGLKAAAINASTLALIDAGISMKDFVCAVSTSCI----DGVAVLDL 174

Query: 480 SGDEDHLGHMD--FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +  E+  G  D    +     G+ ++ MD K+       ++   ++  +    IL++ 
Sbjct: 175 NHIEERSGGPDCLLSIQPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDQ 232



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 86/222 (38%), Gaps = 20/222 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYA 69
           R + ++ G ++ ++DG+     G T ++A V   R +        D   +        +A
Sbjct: 23  RRINIQMG-VSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIVKCE-----FA 76

Query: 70  VGKIPGGYLR--RESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESS 125
                    +  ++++       IS ++ ++           +++  + I V+Q D    
Sbjct: 77  TSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVLQSDGG-- 134

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQ 182
               ++ A++ AL+ +G+  +  V       I+G  VL+    E++       L +    
Sbjct: 135 LKAAAINASTLALIDAGISMKDFVCAVSTSCIDGVAVLDLNHIEERSGGPDCLLSIQPQI 194

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             V+ + +++  + +D+    +  G   CK +   +S   K 
Sbjct: 195 GGVISLNMDSK-VPQDLFESVLELGEKGCKKIFSILSDQVKK 235


>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
 gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
          Length = 249

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 104/252 (41%), Gaps = 20/252 (7%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  +      
Sbjct: 6   ELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQA----- 59

Query: 365 SLSGTQRN----DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
              G +           Y+    +T E        R+        ++A+   +       
Sbjct: 60  --KGKKTEGNDLIINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPR 117

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  E+ ++DG++   ++  ++LAL+DAG+ +++ V      L K     I L+DIS
Sbjct: 118 SQIDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSN---IPLTDIS 174

Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E+  G     +A   T   I  M+M  +      + +   ++ A  G   I + +   
Sbjct: 175 HIEEVSGGPKLTIAALPTAEKIAFMEMSER---FHIDQLETVIETAMAGCREIRDILESA 231

Query: 539 LSESRLQLGEFT 550
           + E  + +G   
Sbjct: 232 VKEHLIHIGSAA 243



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           R +K + G    Q DG+     G T VLA V      K    +G D   +   Y + T++
Sbjct: 24  RHIKCKLGVF-EQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGND-LIINCQYSQATFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
             +      +   R           + +++          +++  + + V+Q D  +   
Sbjct: 82  TSE-----RKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGANYA- 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQD 183
            VS+ AA+ AL+ +G+     VV            L      ++ S    L +    T +
Sbjct: 136 -VSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVSGGPKLTIAALPTAE 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +  +E+       D +   I      C+ + + +    K 
Sbjct: 195 KIAFMEMSERFH-IDQLETVIETAMAGCREIRDILESAVKE 234


>gi|254465231|ref|ZP_05078642.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
 gi|206686139|gb|EDZ46621.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
          Length = 224

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 24/232 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +S + G  +   GS L   GDT  +   T+    +++    + GT        Y  LP A
Sbjct: 1   MSIETGFTKHAEGSCLIKVGDTHVLCTATI----EDRVPPFIKGTGLGWVTAEYGMLPRA 56

Query: 385 TGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           T    R     G    R +   RL  RA+   + + A     + +  ++ ++DG +  A+
Sbjct: 57  TNTRMRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCAS 116

Query: 441 VCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           + G  +A       LM AG     P+  PV+ ++ G+         + D+   ED    +
Sbjct: 117 ITGGWVALRLAVNKLMKAGDVHIDPLLDPVSAVSCGIYAGQP----VLDLDYPEDSEAGV 172

Query: 490 DFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           D     T SG +  +QM  +    S + M   +  A +G + +         
Sbjct: 173 DGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVELAEMQKAASK 224



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 30/231 (12%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAVGK 72
           + +ETG   + ++G+ L   G+T VL T   +  +        L   T  Y     A   
Sbjct: 1   MSIETG-FTKHAEGSCLIKVGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRATN- 58

Query: 73  IPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
                +RRE    +     + I R+I R++R    +    E Q+    +V+Q D      
Sbjct: 59  ---TRMRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGG--TR 113

Query: 128 VVSMVAASAALMLS--------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGS 173
             S+     AL L+         +   P   PV         GQ VL+   P   E    
Sbjct: 114 CASITGGWVALRLAVNKLMKAGDVHIDPLLDPVSAVSCGIYAGQPVLDLDYPEDSEAGVD 173

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            +  ++G+   + + +  E +  S D + + +         + E     +K
Sbjct: 174 GNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVELAEMQKAASK 224


>gi|168702929|ref|ZP_02735206.1| RNase PH [Gemmata obscuriglobus UQM 2246]
          Length = 243

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 24/249 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R + R    +R++S   G  +   GS L   G T  +    +  +      D L G  +
Sbjct: 2   PRPNDRSPTALRELSFTRGYTRPAPGSVLVKMGRTTVLCTCCVEPK----VPDFLVGKGK 57

Query: 372 NDFMMHYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LP +T         G    R +   RL  R++  V+        TL I  +
Sbjct: 58  GWLTAEYGMLPGSTHTRKPRDKAGKVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCD 117

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPIS------------KPVAGIAMGLVKDGDDFIIL 476
           + E+DG +  A++ G+ +A +DA   I               VA +++GL++  +     
Sbjct: 118 VLEADGGTRTASITGAFVAAVDAINSIKSLLTVPVTEVLTDSVAAVSVGLIEGEER---- 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  +  T SG I  +Q   +    +   +   +   + G   I    
Sbjct: 174 LDLEYVEDRDADVDMNLVMTGSGKIIEVQGSGEEATFTRKQLDRLVDLGEAGIQAITLAQ 233

Query: 536 SKVLSESRL 544
              L  +  
Sbjct: 234 KAALGSAWP 242



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 40/234 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           R L    G   R + G+VL   G T VL T   +  +    DF        LT  Y    
Sbjct: 13  RELSFTRG-YTRPAPGSVLVKMGRTTVLCTCCVEPKVP---DFLVGKGKGWLTAEY---- 64

Query: 68  YAVGKIPGGYLRRESR-----PTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQH 120
              G +PG    R+ R          + I R+I RS+R + +     E    +  +V++ 
Sbjct: 65  ---GMLPGSTHTRKPRDKAGKVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCDVLEA 121

Query: 121 DLESSPHVVSMVAASAALMLSGLP----------FEGPVVGAQVDYINGQYVLNPRLDED 170
           D  +    ++    +A   ++ +               V    V  I G+  L+    ED
Sbjct: 122 DGGTRTASITGAFVAAVDAINSIKSLLTVPVTEVLTDSVAAVSVGLIEGEERLDLEYVED 181

Query: 171 QG---SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           +     ++L ++G+   ++ V+    +   +   +   +  G    + +  A  
Sbjct: 182 RDADVDMNLVMTGS-GKIIEVQGSGEEATFTRKQLDRLVDLGEAGIQAITLAQK 234


>gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97]
 gi|59798839|sp|Q7U076|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium bovis AF2122/97]
          Length = 259

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 94/258 (36%), Gaps = 25/258 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR    +R +    G  +   GS L   G T+ +   ++     E        T 
Sbjct: 2   SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVT----EGVPRWRKATG 57

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G  S R     RL  R++   +   A    T+ I 
Sbjct: 58  LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I  D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A      +  
Sbjct: 174 IRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFA 233

Query: 534 EMSKVLSESRLQLGEFTP 551
                L+     +    P
Sbjct: 234 AQRDALALPYPGVLPQGP 251



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 24/200 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +  G       G+VL  +G T VL T                   LT  Y     A
Sbjct: 14  RPVIITRG-FTENPAGSVLIEFGHTKVLCTASVT-EGVPRWRKATGLGWLTAEYAMLPSA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
                     R  R +     ISR+I RS+R          N   +  +V+Q D      
Sbjct: 72  THSRSDRESVR-GRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDVLQADGG--TR 128

Query: 128 VVSMVAA-----------SAALMLSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSL 174
             ++  A           SAA  LS   P    +    V  ++G+  ++ P  ++ +  +
Sbjct: 129 TAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEV 188

Query: 175 DLFVSGTQDAVLMVELEANQ 194
           D+ V  T    L+      +
Sbjct: 189 DMNVVATDTGTLVEIQGTGE 208


>gi|326387915|ref|ZP_08209521.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207961|gb|EGD58772.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
          Length = 238

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 24/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R I+ +    +   GS L   GDT+ IV  ++    +E+    L G   
Sbjct: 1   MRASGRAADEMRAITIETHFTKHAEGSVLIGFGDTKVIVTASV----EERVPPFLRGKGE 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT          G  S R     RL  R++  V          + +  
Sbjct: 57  GWVTAEYSMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +A       LM +G     P+ + VA I+ G+V    D   +
Sbjct: 117 DVIQADGGTRTASISGAWIALRLAVDKLMASGQIKEDPLPRKVAAISCGIV----DGTPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D      + G I  +Q   +     E  ++  L+ A+ G   I    
Sbjct: 173 LDLDYTEDSTADADANFVLIEGGQIAEVQATAEGATYDEEALLRLLRLARIGCGEIFAAQ 232

Query: 536 SKVL 539
            +  
Sbjct: 233 DRAT 236



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    + ++G+VL  +G+T V+ T   +  +     G+    +T  Y     A 
Sbjct: 12  RAITIET-HFTKHAEGSVLIGFGDTKVIVTASVEERVPPFLRGKGEGWVTAEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q+    +V+Q D       
Sbjct: 71  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED 170
            S+  A  AL L+             P    V       ++G  VL+    ED
Sbjct: 128 ASISGAWIALRLAVDKLMASGQIKEDPLPRKVAAISCGIVDGTPVLDLDYTED 180


>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
 gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
          Length = 246

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   ELLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAK---- 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S    +     Y+    +T E        R+ +      ++A+   +         + 
Sbjct: 61  --SKHTESIINCQYSQATFSTAERKYRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISHFEE 175

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   T   I  ++M  +        ++       R    IL 
Sbjct: 176 VSGGPKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILE 226



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q DG+     G T VLA V      K       +   Y + T++  +      +   R  
Sbjct: 35  QPDGSAYMEQGNTKVLAAVYGPHQAKSKHTESIINCQYSQATFSTAE-----RKYRPRGD 89

Query: 86  ENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
              +     + +++          +++  + + V+Q D  +    V++ AA+ AL+ +G+
Sbjct: 90  RKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGANYA--VALNAATLALIDAGI 147

Query: 144 PFEGPVVGAQVDYINGQYVLNP--RLDEDQGSLDLFVSG--TQDAVLMVELEANQLSE-- 197
                +V            L      +E  G   L V+   T + +  +E+      +  
Sbjct: 148 CLNEFIVACTASLSKSNIPLTDISHFEEVSGGPKLTVAALPTAEKIAFLEMSERFHIDHL 207

Query: 198 DVVLDAIIFGHNECKPVIEA 217
           + V++  + G  E + ++EA
Sbjct: 208 ETVIETAMAGCREIRDILEA 227


>gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
 gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11]
 gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|215403187|ref|ZP_03415368.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|215410985|ref|ZP_03419793.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|215426669|ref|ZP_03424588.1| ribonuclease PH [Mycobacterium tuberculosis T92]
 gi|215430226|ref|ZP_03428145.1| ribonuclease PH [Mycobacterium tuberculosis EAS054]
 gi|215445522|ref|ZP_03432274.1| ribonuclease PH [Mycobacterium tuberculosis T85]
 gi|218753051|ref|ZP_03531847.1| ribonuclease PH [Mycobacterium tuberculosis GM 1503]
 gi|219557243|ref|ZP_03536319.1| ribonuclease PH [Mycobacterium tuberculosis T17]
 gi|224989745|ref|YP_002644432.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799612|ref|YP_003032613.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186279|ref|ZP_05763753.1| ribonuclease PH [Mycobacterium tuberculosis CPHL_A]
 gi|260200397|ref|ZP_05767888.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289554868|ref|ZP_06444078.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210]
 gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207]
 gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506]
 gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475]
 gi|1710618|sp|Q10628|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228291|sp|A1KID0|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228295|sp|A5U240|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808595|sp|C1AMY5|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|1419043|emb|CAA99973.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11]
 gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289439500|gb|EFD21993.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A]
 gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148]
 gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207]
          Length = 259

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 94/258 (36%), Gaps = 25/258 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR    +R +    G  +   GS L   G T+ +   ++     E        T 
Sbjct: 2   SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVT----EGVPRWRKATG 57

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G  S R     RL  R++   +   A    T+ I 
Sbjct: 58  LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I  D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A      +  
Sbjct: 174 IRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFA 233

Query: 534 EMSKVLSESRLQLGEFTP 551
                L+     +    P
Sbjct: 234 AQRDALALPYPGVLPQGP 251



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 24/200 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +  G       G+VL  +G T VL T                   LT  Y     A
Sbjct: 14  RPVIITRG-FTENPAGSVLIEFGHTKVLCTASVT-EGVPRWRKATGLGWLTAEYAMLPSA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
                     R  R +     ISR+I RS+R          N   +  +V+Q D      
Sbjct: 72  THSRSDRESVR-GRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TR 128

Query: 128 VVSMVAA-----------SAALMLSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSL 174
             ++  A           SAA  LS   P    +    V  ++G+  ++ P  ++ +  +
Sbjct: 129 TAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEV 188

Query: 175 DLFVSGTQDAVLMVELEANQ 194
           D+ V  T    L+      +
Sbjct: 189 DMNVVATDTGTLVEIQGTGE 208


>gi|28198628|ref|NP_778942.1| ribonuclease PH [Xylella fastidiosa Temecula1]
 gi|71274728|ref|ZP_00651016.1| Ribonuclease PH [Xylella fastidiosa Dixon]
 gi|71899591|ref|ZP_00681746.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|71900258|ref|ZP_00682395.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|170730030|ref|YP_001775463.1| ribonuclease PH [Xylella fastidiosa M12]
 gi|182681311|ref|YP_001829471.1| ribonuclease PH [Xylella fastidiosa M23]
 gi|32129976|sp|Q87DG3|RNPH_XYLFT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736953|sp|B2IA38|RNPH_XYLF2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736954|sp|B0U6W7|RNPH_XYLFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28056712|gb|AAO28591.1| ribonuclease PH [Xylella fastidiosa Temecula1]
 gi|71164460|gb|EAO14174.1| Ribonuclease PH [Xylella fastidiosa Dixon]
 gi|71729971|gb|EAO32065.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|71730633|gb|EAO32709.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|167964823|gb|ACA11833.1| tRNA nucleotidyltransferase [Xylella fastidiosa M12]
 gi|182631421|gb|ACB92197.1| ribonuclease PH [Xylella fastidiosa M23]
 gi|307579762|gb|ADN63731.1| ribonuclease PH [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 241

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +  +        GS L   G+T  +   ++    + +    L      
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASV----EAKVPVFLRNKGEG 60

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP +T   S      G  + R +   RL  RA+   + +TA    T+ +  +
Sbjct: 61  WITAEYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G+ +AL+D              P+   VA +++G+       + + 
Sbjct: 121 VLQADGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGAVAAVSVGIY----RGMPVL 176

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D  V   D  G   +Q   +        + M L  A+RG   + +   
Sbjct: 177 DLDYPEDSDCDTDMNVVMNDEGGFIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQR 236

Query: 537 KV 538
           + 
Sbjct: 237 EA 238



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 27/203 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL ++G T+V+ T   +  +           +T  Y     +             +
Sbjct: 27  AEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWITAEYGMLPRST-HTRSEREAARGK 85

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL--- 138
                + I R+I R++R    +    E  +    +V+Q D        ++  A  AL   
Sbjct: 86  QAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQADGG--TRTAAITGAYVALVDA 143

Query: 139 --------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAVLM 187
                    L   P  G V    V    G  VL+   P   +    +++ ++  +   + 
Sbjct: 144 VRCLEQRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYPEDSDCDTDMNVVMN-DEGGFIE 202

Query: 188 VELEANQLS----EDVVLDAIIF 206
           ++  A Q +    E  +L A+  
Sbjct: 203 LQGTAEQQAFRRGELDMLLALAE 225


>gi|29351673|gb|AAH49283.1| Pnpt1 protein [Mus musculus]
          Length = 235

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%)

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
           T+ GITA+Q D+K+ G+   I++ A+QQA   +  IL  M+K +S+ R    E  P VE 
Sbjct: 2   TNKGITALQADIKLPGVPIKIIMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVET 61

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT- 614
           + +P  +    +G GG  ++ +  +TG  ++  D+ T  I + +   +  AR+ I  I  
Sbjct: 62  VKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFITEICR 121

Query: 615 ----DVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDV-VKEGD 668
                  E   +Y   + ++ D G  V         L+H SQL   ++   + + ++ G 
Sbjct: 122 DDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQ 181

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVD 691
            + VK    D   G+++LS KV+ 
Sbjct: 182 EIQVKYFGRDPADGRMRLSRKVLQ 205


>gi|169335158|ref|ZP_02862351.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257896|gb|EDS71862.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
           17244]
          Length = 241

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR D R  +  R++           G  L   G+T+ I    +    + +    L G   
Sbjct: 2   VRSDNRKFDEKREVKITRNYTMYPDGCVLIESGNTKVICSAFI----ENRVPPFLRGEGT 57

Query: 372 NDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T    +          R     RL  R++  V+  +     T+ I  
Sbjct: 58  GWITCEYSMLPSSTQTRKQRDINRLKLDGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG + +A++ G+ +AL D             +P++  +A I++G+V++      L
Sbjct: 118 DVIQADGGTRVASITGAFVALYDALSKMVEKGEIERLPLTSFLAAISVGIVENEP----L 173

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V   + G    + M  +   I E  +   L  AK+G   ++   
Sbjct: 174 LDLCYIEDSNAIADMNVVMNEYGEFIELGMTGEKRPIKEEELNKLLILAKKGIKELIEIQ 233

Query: 536 SKV 538
            +V
Sbjct: 234 KEV 236



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 23/214 (10%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG VL   G T V+ +   +  +     G+    +T  Y     +        + R  + 
Sbjct: 26  DGCVLIESGNTKVICSAFIENRVPPFLRGEGTGWITCEYSMLPSSTQTRKQRDINR-LKL 84

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM--- 139
                 I R+I RS+R +       E  ++   +V+Q D      V S+  A  AL    
Sbjct: 85  DGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDCDVIQADGG--TRVASITGAFVALYDAL 142

Query: 140 --------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAV-LM 187
                   +  LP    +    V  +  + +L+    ED      +++ ++   + + L 
Sbjct: 143 SKMVEKGEIERLPLTSFLAAISVGIVENEPLLDLCYIEDSNAIADMNVVMNEYGEFIELG 202

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +  E   + E+ +   +I      K +IE   ++
Sbjct: 203 MTGEKRPIKEEELNKLLILAKKGIKELIEIQKEV 236


>gi|52842229|ref|YP_096028.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54294910|ref|YP_127325.1| ribonuclease PH [Legionella pneumophila str. Lens]
 gi|54297939|ref|YP_124308.1| ribonuclease PH [Legionella pneumophila str. Paris]
 gi|21759423|sp|Q9X528|RNPH_LEGPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215813|sp|Q5WV28|RNPH_LEGPL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215816|sp|Q5X3P0|RNPH_LEGPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215829|sp|Q5ZTZ6|RNPH_LEGPH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|4704704|gb|AAD28218.1|AF120720_1 ribonuclease PH [Legionella pneumophila 130b]
 gi|52629340|gb|AAU28081.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53751724|emb|CAH13146.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Paris]
 gi|53754742|emb|CAH16229.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Lens]
 gi|307610737|emb|CBX00344.1| ribonuclease PH [Legionella pneumophila 130b]
          Length = 235

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R+ + +R ++          GS L   G T+ I   ++     E     L G  +
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASI----VEGVPRFLKGKNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWITAEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +A+ D             +P    VA +++G+         +
Sbjct: 117 DVIQADGGTRTAAITGSCVAMRDAIHWMVQREKIKKMPAFNYVAAVSVGIY----RGQPV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED L   D  V   + G    +Q   +    +   +   L  A+ G   ++   
Sbjct: 173 LDLDYAEDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQ 232

Query: 536 SKV 538
              
Sbjct: 233 KNA 235



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAV-GKIPGGYL 78
           ++G+VL  +G+T V+       S+ +G   F        +T  Y     A   +      
Sbjct: 24  AEGSVLVEFGQTKVICNA----SIVEGVPRFLKGKNQGWITAEYGMLPRATHSRTEREAS 79

Query: 79  RRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASA 136
           +   +     + I R+I RS+R         E  +    +V+Q D        ++  +  
Sbjct: 80  K--GKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQADGG--TRTAAITGSCV 135

Query: 137 AL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQ 182
           A+            +  +P    V    V    GQ VL+    ED   +  +++ ++  Q
Sbjct: 136 AMRDAIHWMVQREKIKKMPAFNYVAAVSVGIYRGQPVLDLDYAEDVLAETDMNVVMN-EQ 194

Query: 183 DAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
              + V+  A   S   + +   +         +IE   
Sbjct: 195 GHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQK 233


>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
 gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
          Length = 249

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 96/231 (41%), Gaps = 9/231 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   ELLSEQGLRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKGKK- 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             + +        Y+    +T E        R+        ++A+   +         + 
Sbjct: 64  --TESNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K+    I L+DIS  E+
Sbjct: 122 VYVEVLQADGANYAVALNAATLALIDAGICLNELIVACTASLSKNN---IPLTDISHIEE 178

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   T   I  ++M  +        ++       R    IL 
Sbjct: 179 VSGGPKLTVAALPTAQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILE 229



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 76/207 (36%), Gaps = 20/207 (9%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           Q DG+     G T VLA V      K    +  D   +   Y + T++  +      +  
Sbjct: 35  QPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESND-VIINCQYSQATFSTAE-----RKNR 88

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            R           + +++          +++  V + V+Q D  +    V++ AA+ AL+
Sbjct: 89  PRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQADGANYA--VALNAATLALI 146

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQDAVLMVELEANQL 195
            +G+     +V            L      ++ S    L +    T   +  +E+     
Sbjct: 147 DAGICLNELIVACTASLSKNNIPLTDISHIEEVSGGPKLTVAALPTAQKIAFLEMSERFH 206

Query: 196 SE--DVVLDAIIFGHNECKPVIEAISK 220
            +  + V++  + G  E + ++EA+ K
Sbjct: 207 IDHLETVIETAMAGCREIRDILEAVVK 233


>gi|170728887|ref|YP_001762913.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
 gi|226736940|sp|B1KL12|RNPH_SHEWM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169814234|gb|ACA88818.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
          Length = 237

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R     R ++          GS L   G+T+ +   +      E     L G  +
Sbjct: 1   MRPNDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFT----EGVPRFLKGKGQ 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T          G  S R     RL  R++   +   A    T+ I  
Sbjct: 57  GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL+D              P+   +A +++G+ K       +
Sbjct: 117 DVIQADGGTRTAAITGACVALVDALNWARGKGILKNNPLKFLIAAVSVGIYKGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  V  T++G +  +Q   +    S   ++  L+ AK G   I++  
Sbjct: 173 CDLEYIEDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDVQ 232

Query: 536 SKVLS 540
              LS
Sbjct: 233 KAALS 237



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 32/203 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+ + T +    ++G+VL  +GET VL T     S  +G   F        +T  Y   
Sbjct: 12  RPVTI-TRQFTAHAEGSVLVEFGETKVLCTA----SFTEGVPRFLKGKGQGWVTAEYGML 66

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLES 124
             +          R  + +     I R+I RS+R         E  ++   +V+Q D   
Sbjct: 67  PRSTHSRMDREAAR-GKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQADGG- 124

Query: 125 SPHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRL---DED 170
                ++  A  AL+ +       G+    P +  +    V    G+ + +       E 
Sbjct: 125 -TRTAAITGACVALVDALNWARGKGILKNNPLKFLIAAVSVGIYKGEPICDLEYIEDSEA 183

Query: 171 QGSLDLFVSGTQDAVLMVELEAN 193
           +  +++ ++ T   ++ ++  A 
Sbjct: 184 ETDMNVVMTET-GKMIEIQGTAE 205


>gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium gilvum PYR-GCK]
 gi|315443409|ref|YP_004076288.1| RNAse PH [Mycobacterium sp. Spyr1]
 gi|189043767|sp|A4T8F7|RNPH_MYCGI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145215432|gb|ABP44836.1| RNAse PH [Mycobacterium gilvum PYR-GCK]
 gi|315261712|gb|ADT98453.1| RNAse PH [Mycobacterium sp. Spyr1]
          Length = 260

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 17/247 (6%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R ++   G      GS L   G+T+ +   ++     E       G+ 
Sbjct: 2   SRREDGRLDDELRPVTITRGFTTHPAGSVLVEFGETRVMCTASVT----EGVPRWRKGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT + S      G    R     RL  R++   +   A    T+ I 
Sbjct: 58  QGWLTAEYAMLPAATHDRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPI--------SKPVAGIAMGLVKDGDDFIILSD 478
            ++ ++DG +  A + G+ +AL DA   +         +P++     +     D  +  D
Sbjct: 118 CDVLQADGGTRTAAITGAFVALSDAVTYLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVD 177

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +   ED    +D  V  TD+G +  +Q   +      + +   L  A      +      
Sbjct: 178 LPYTEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRA 237

Query: 538 VLSESRL 544
            L     
Sbjct: 238 ALELPYP 244



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G     + G+VL  +GET V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPVTITRGFTTHPA-GSVLVEFGETRVMCTASVTEGVPRWRKGSGQGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                    +  R       ISR++ RS+R          N   +  +V+Q D       
Sbjct: 73  HDRSDRESVK-GRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAFVALSDAVTYLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYTEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKL 221
           + V  T    L+      +       + D +LDA +   ++   +  A  +L
Sbjct: 190 MNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALEL 241


>gi|291166728|gb|EFE28774.1| ribonuclease PH/Ham1 protein [Filifactor alocis ATCC 35896]
          Length = 471

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 99/247 (40%), Gaps = 24/247 (9%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +RDI+ + G+ +   GS L   GDT+ I   ++    +E+    L GT +      Y  
Sbjct: 6   QLRDINIETGINKYAEGSVLVSFGDTRVICTASV----EEKVPAFLKGTGKGWVSAEYAM 61

Query: 381 LPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           LP +T +  +     G    R     RL  R++   +        T+ I  ++ ++DG +
Sbjct: 62  LPRSTEQRKKRDSSRGKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQADGGT 121

Query: 437 SMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             A++ GS +A+           M    PIS  ++ +++G+V   +    + D++ + D 
Sbjct: 122 RTASISGSFVAMAIACKQLYDKKMIEEFPISHYISAVSVGIVNGKN----ILDLNYEFDS 177

Query: 486 LGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              +D  V   ++     +Q   +        +   L  A+ G   I+      L +  +
Sbjct: 178 KADVDLNVVMNENLEYVELQGTAEGVAFRRQQLDSLLTLAEIGCKEIIELQKTALGKQIV 237

Query: 545 QLGEFTP 551
            L E  P
Sbjct: 238 SLIEGIP 244



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 121/336 (36%), Gaps = 43/336 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + +ETG I + ++G+VL ++G+T V+ T   +  +     G     ++  Y     + 
Sbjct: 8   RDINIETG-INKYAEGSVLVSFGDTRVICTASVEEKVPAFLKGTGKGWVSAEYAMLPRST 66

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +       R  +       I R+I RS+R         E    +  +V+Q D       
Sbjct: 67  EQRKKRDSSR-GKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQADGG--TRT 123

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLDL 176
            S+  +  A+ ++             P    +    V  +NG+ +L+   + + +  +DL
Sbjct: 124 ASISGSFVAMAIACKQLYDKKMIEEFPISHYISAVSVGIVNGKNILDLNYEFDSKADVDL 183

Query: 177 FVSGTQDAV-LMVELEANQLS--EDVVLDAIIFGHNECKPVIEAI-----SKLAKMCAKE 228
            V   ++   + ++  A  ++     +   +      CK +IE        ++  +    
Sbjct: 184 NVVMNENLEYVELQGTAEGVAFRRQQLDSLLTLAEIGCKEIIELQKTALGKQIVSLIEGI 243

Query: 229 PIVIDSKDFSKLEEEMSQMI---------KEDLRVSCFIPEKYVRCKQIDDLKKKMVSYF 279
           P   +  + +  E+E+   +         K D  ++   P K    +++  ++ K V   
Sbjct: 244 PFEEEPIEKNIEEKEIKDFLSSYEKNDSQKYDFVLATSNPHKVEELQKL--IRLKSVEIL 301

Query: 280 SSEHSSWNEGEIVSVFEDIQAKVV---RTVMLDKKV 312
           S +       EIV   +  +   +   R +      
Sbjct: 302 SLDDVGLKGIEIVEDGDSFEENALIKAREIAKRTGK 337


>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
 gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
          Length = 249

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 103/252 (40%), Gaps = 20/252 (7%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  +      
Sbjct: 6   ELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQA----- 59

Query: 365 SLSGTQRN----DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
              G +           Y+    +T E        R+        ++A+   +       
Sbjct: 60  --KGKKTEGNDLVINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPR 117

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  E+ ++DG++   ++  ++LAL+DAG+ +++ V      L       I L+DIS
Sbjct: 118 SQIDIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSNAN---IPLTDIS 174

Query: 481 GDEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E+  G     +A   T   I  M+M  +      + +   ++ A  G   I + +   
Sbjct: 175 HIEEVSGGPKLTIAALPTAEKIAFMEMSER---FHIDQLETVIETAMAGCREIRDILESA 231

Query: 539 LSESRLQLGEFT 550
           + E  + +G   
Sbjct: 232 VKEHLIHIGSAA 243



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           R +K + G    Q DG+     G T VLA V      K    +G D   +   Y + T++
Sbjct: 24  RHIKCKLGVF-EQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGND-LVINCQYSQATFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
             +      +   R           + +++          +++  + + V+Q D  +   
Sbjct: 82  TSE-----RKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGANYA- 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQD 183
            VS+ AA+ AL+ +G+     VV       N    L      ++ S    L +    T +
Sbjct: 136 -VSLNAATLALIDAGICLNEFVVACTASLSNANIPLTDISHIEEVSGGPKLTIAALPTAE 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +  +E+       D +   I      C+ + + +    K 
Sbjct: 195 KIAFMEMSERFH-IDQLETVIETAMAGCREIRDILESAVKE 234


>gi|296284093|ref|ZP_06862091.1| ribonuclease PH [Citromicrobium bathyomarinum JL354]
          Length = 237

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R IS + G  +   GS L   GDT+ +   ++    +      + G   
Sbjct: 1   MRPSGRAPDQMRAISIETGFTKHAEGSCLISFGDTRVLCTASV----ENSVPPWMRGKGA 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT          G  S R     RL  R++  V+         + +  
Sbjct: 57  GWVTGEYSMLPRATHTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDMKKLGERQITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL  A             PI+  +A I+ G+ K       +
Sbjct: 117 DVIQADGGTRTAAISGAWVALRLAIDGLKKSGAILEDPITGKIAAISCGVYKGTP----V 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+  DED     D      + G I  +Q   +     E  ++  L+ A+ G   I    
Sbjct: 173 LDLDYDEDSSADADANFVLIEGGKIAEVQATAEGAAYDEEALLRLLRLAQMGCGEIFKAQ 232

Query: 536 SKV 538
              
Sbjct: 233 DAA 235



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ETG   + ++G+ L ++G+T VL T   + S+     G+    +T  Y     A 
Sbjct: 12  RAISIETG-FTKHAEGSCLISFGDTRVLCTASVENSVPPWMRGKGAGWVTGEYSMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       + +     I R+I RS+R +       E Q+    +V+Q D       
Sbjct: 71  -HTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDMKKLGERQITLDCDVIQADGG--TRT 127

Query: 129 VSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
            ++  A  AL L       SG     P  G +         G  VL+   DED  
Sbjct: 128 AAISGAWVALRLAIDGLKKSGAILEDPITGKIAAISCGVYKGTPVLDLDYDEDSS 182


>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
          Length = 244

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 15/245 (6%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE-QYV 363
           + +  + +R+DGR S  +R ++ ++G+L R  GSS + +G+T+ I V   G  E   Q  
Sbjct: 5   SYISPEGLRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTK-ITVAIYGPHESTTQK- 62

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              S   R      +     +T E        +       L ++A    +         +
Sbjct: 63  ---SLFDRASIKCEFAMSSFSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQI 119

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  ++ +SDG    A +   +LA++DAG+P+   V   +   +    +   L D++  E
Sbjct: 120 DIYVQVLQSDGGLKSAAINAVTLAMIDAGIPMRDYVCACSATFI----EGSALMDLNHME 175

Query: 484 DHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +  G  D  ++      G+ ++ M+ K   + + +    L  A  G   I   + + + +
Sbjct: 176 ERSGGADLLLSIHPQLGGVISINMESK---VPQEMFESVLDMALAGCKKIYYLLQEQVKK 232

Query: 542 SRLQL 546
               L
Sbjct: 233 HSKDL 237



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 83/223 (37%), Gaps = 17/223 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R L +  G + R +DG+     G T +   +         K   D   +        +A+
Sbjct: 23  RRLNMRMGVLNR-ADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIKCE-----FAM 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHV 128
                   + +SR  +     S +I ++           +++  + + V+Q D       
Sbjct: 77  SSFSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQSDGG--LKS 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
            ++ A + A++ +G+P    V      +I G  +++    E++     L L +      V
Sbjct: 135 AAINAVTLAMIDAGIPMRDYVCACSATFIEGSALMDLNHMEERSGGADLLLSIHPQLGGV 194

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + + +E+  + +++    +      CK +   + +  K  +K+
Sbjct: 195 ISINMESK-VPQEMFESVLDMALAGCKKIYYLLQEQVKKHSKD 236


>gi|262193889|ref|YP_003265098.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
 gi|262077236|gb|ACY13205.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
          Length = 250

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 23/235 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR++  +R +    G  Q   GS+L   G+T  +   ++    +E+    L+G   
Sbjct: 2   PRPDGREANQLRPVEITTGFQQYAEGSALIKSGNTWVLCAASI----EERVPPFLAGRGT 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 Y  LP +T   S   +   R     RL  R++   +   A     + I  ++ +
Sbjct: 58  GWVTAEYAMLPRSTHTRSGRHS-GGRGKEIQRLIGRSLRAAVNMEALGERAITIDCDVLQ 116

Query: 432 SDGSSSMATVCGSSLALMDA-------------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           +DG + +A++ G  +AL  A                + +P+A I++G++    D     D
Sbjct: 117 ADGGTRVASITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGII----DGEARLD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +   ED    +D  V  T+SG +  +Q   + G  S   +   L  A  G   + 
Sbjct: 173 LPYAEDSTAEVDMNVVMTESGHLVEVQGTGEQGTFSRAQLDSLLDLATEGVKRLC 227



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 29/223 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++ TG   + ++G+ L   G T VL     +  +     G+    +T  Y       
Sbjct: 13  RPVEITTG-FQQYAEGSALIKSGNTWVLCAASIEERVPPFLAGRGTGWVTAEYAM----- 66

Query: 71  GKIPGGYLRRESRPT-ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
             +P     R  R +      I R+I RS+R   +     E    +  +V+Q D  +   
Sbjct: 67  --LPRSTHTRSGRHSGGRGKEIQRLIGRSLRAAVNMEALGERAITIDCDVLQADGGTRVA 124

Query: 128 VVSMVAASAALMLSGLPFEG-----------PVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++    + AL + GL   G           P+    V  I+G+  L+ P  ++    +D
Sbjct: 125 SITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGIIDGEARLDLPYAEDSTAEVD 184

Query: 176 LFVSGTQDA-VLMVELEANQ--LSEDVVLDAIIFGHNECKPVI 215
           + V  T+   ++ V+    Q   S   +   +       K + 
Sbjct: 185 MNVVMTESGHLVEVQGTGEQGTFSRAQLDSLLDLATEGVKRLC 227


>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
 gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
          Length = 249

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 9/231 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   ELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKGMK- 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             + T        Y+    AT E        R+ +       +A+   +         + 
Sbjct: 64  --TETNDVIINCQYSQATFATAERKNRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 122 IYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSS---IPLTDISHTEE 178

Query: 485 HLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   +   I  ++M  +        ++       R    IL 
Sbjct: 179 VSGGPMLTVAALPNAQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILE 229



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 13/144 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAV 70
           R +K + G    Q DG+     G T VLA V      + +K   +   +   Y + T+A 
Sbjct: 24  RHIKCKLGVF-EQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIINCQYSQATFAT 82

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHV 128
            +      +   R     +     +++++          +++  + + V+Q D  +    
Sbjct: 83  AE-----RKNRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQADGANYA-- 135

Query: 129 VSMVAASAALMLSGLPFEGPVVGA 152
           V++ AA+ AL+ +G+     +V  
Sbjct: 136 VALNAATLALIDAGICLNEFIVAC 159


>gi|260204601|ref|ZP_05772092.1| ribonuclease PH [Mycobacterium tuberculosis K85]
 gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
 gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
          Length = 259

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 94/258 (36%), Gaps = 25/258 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR    +R +    G  +   GS L   G T+ +   ++     E        T 
Sbjct: 2   SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVT----EGVPRWRKATG 57

Query: 371 RNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G  S R     RL  R++   +   A    T+ I 
Sbjct: 58  LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V    D  
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGR 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I  D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A      +  
Sbjct: 174 IRVDLPYEEDSPAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFA 233

Query: 534 EMSKVLSESRLQLGEFTP 551
                L+     +    P
Sbjct: 234 AQRDALALPYPGVLPQGP 251



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 66/200 (33%), Gaps = 24/200 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +  G       G+VL  +G T VL T                   LT  Y     A
Sbjct: 14  RPVIITRG-FTENPAGSVLIEFGHTKVLCTASVT-EGVPRWRKATGLGWLTAEYAMLPSA 71

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
                     R  R +     ISR+I RS+R          N   +  +V+Q D      
Sbjct: 72  THSRSDRESVR-GRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TR 128

Query: 128 VVSMVAA-----------SAALMLSG-LPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSL 174
             ++  A           SAA  LS   P    +    V  ++G+  ++   +ED    +
Sbjct: 129 TAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSPAEV 188

Query: 175 DLFVSGTQDAVLMVELEANQ 194
           D+ V  T    L+      +
Sbjct: 189 DMNVVATDTGTLVEIQGTGE 208


>gi|88811938|ref|ZP_01127191.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
 gi|88790822|gb|EAR21936.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
          Length = 238

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR +  +R +    G  +   GS+L   GDT+ +   ++    +E+    L  + R
Sbjct: 1   MRPSGRHNHEMRAVRITRGFTKHAEGSALVEFGDTKILCNASV----EERVPPWLRNSGR 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +   A     + I  
Sbjct: 57  GWITAEYAMLPRATQSRNDREAVRGRQQGRTVEIQRLIGRSLRAAIDLQALGERRIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G  +AL D              P+   VA +++G+        ++
Sbjct: 117 DVLQADGGTRTAAITGGYVALADALQSLIKKGLLKRPPLFGHVAAVSVGIY----RGKVV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D  +   + G +  +Q   +        +   +  A+ G   ++   
Sbjct: 173 LDLDYAEDAEAETDMNIVMNEVGALIEIQGTAEGHAFRRVELGQMIDLAEEGTRSLIEAQ 232

Query: 536 SKV 538
            + 
Sbjct: 233 RQA 235



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 25/221 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + ++G+ L  +G+T +L     +  +           +T  Y     A          R 
Sbjct: 22  KHAEGSALVEFGDTKILCNASVEERVPPWLRNSGRGWITAEYAMLPRATQSRNDREAVR- 80

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM 139
            R     + I R+I RS+R         E ++I   +V+Q D        ++     AL 
Sbjct: 81  GRQQGRTVEIQRLIGRSLRAAIDLQALGERRIIIDCDVLQADGG--TRTAAITGGYVALA 138

Query: 140 -----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                      L   P  G V    V    G+ VL+    ED   +  +++ ++    A+
Sbjct: 139 DALQSLIKKGLLKRPPLFGHVAAVSVGIYRGKVVLDLDYAEDAEAETDMNIVMN-EVGAL 197

Query: 186 LMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + ++   E +      +   I       + +IEA  +  + 
Sbjct: 198 IEIQGTAEGHAFRRVELGQMIDLAEEGTRSLIEAQRQALEA 238


>gi|227495770|ref|ZP_03926081.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
 gi|226834699|gb|EEH67082.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
          Length = 263

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 99/253 (39%), Gaps = 28/253 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +R ++      +   GS L   G T+ + V +      E       G+   
Sbjct: 9   RKDGRATDELRPVTITRRWQEHGEGSVLVEFGRTRVLCVASFT----EGVPRWRKGSGEG 64

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP A  E S      G    R     RL  RA+  V+   A    T+ +  +
Sbjct: 65  WVTAEYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRALRGVVDVAALGENTIALDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMD--------------AGVP-ISKPVAGIAMGLVKDGDDF 473
           + ++DG +  A+V G+ +AL D              AG P I+  ++ I++G++    D 
Sbjct: 125 VLQADGGTRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGII----DG 180

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +   D+  +ED   H D  V  T +G    +Q   +    + + +   L  A +G   + 
Sbjct: 181 VPCLDLPYEEDVRAHTDMNVVQTGAGKFIEVQGTAEHAPFNRDELCALLDLATKGNGELA 240

Query: 533 NEMSKVLSESRLQ 545
                VL+    +
Sbjct: 241 ELQKAVLAGPSDE 253



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 40/249 (16%)

Query: 14  RPLKL-----ETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQE 65
           RP+ +     E G       G+VL  +G T VL    +   +   + G     +T  Y  
Sbjct: 19  RPVTITRRWQEHGE------GSVLVEFGRTRVLCVASFTEGVPRWRKGSGEGWVTAEYAM 72

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLE 123
              A  +  G    R  +       ISR+I R++R +       E  +    +V+Q D  
Sbjct: 73  LPRAGSERSGRESVR-GKVGGRTHEISRLIGRALRGVVDVAALGENTIALDCDVLQADGG 131

Query: 124 SSPHVVSMVAASAALML--------------SGLP-FEGPVVGAQVDYINGQYVLNPRLD 168
                 S+  A  AL                +G P     +    V  I+G   L+   +
Sbjct: 132 --TRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGIIDGVPCLDLPYE 189

Query: 169 ED---QGSLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
           ED      +++  +G     + V+  A       D +   +         + E    +  
Sbjct: 190 EDVRAHTDMNVVQTG-AGKFIEVQGTAEHAPFNRDELCALLDLATKGNGELAELQKAVLA 248

Query: 224 MCAKEPIVI 232
             + EP  +
Sbjct: 249 GPSDEPFTV 257


>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 253

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 10/237 (4%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R+DGR    +R +  +VGL     GS+    G+T+  V    G +E    + S     
Sbjct: 23  GLRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTK-CVAAVYGPKES--KIQSAQLHD 79

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R    + YN    ++GE        +R +    + +R   PV+  +      + I  +I 
Sbjct: 80  RAVINVEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQIL 139

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           + DG +  A +  + LA++DAG+P+S  V   + G      +   L D++  E+      
Sbjct: 140 QLDGGALHAAINATCLAMIDAGIPMSDYVIACSAGF----SNGSALLDLNYIEESAELPV 195

Query: 491 FKVAGTDS--GITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              A       +T + M+ ++     ++++ +A +        +   + K   + R 
Sbjct: 196 LTAALLPKSGKLTMLSMESRLHLNHFQDVLNLATEGCNTLAESLNETVRKACKKPRP 252



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 87/215 (40%), Gaps = 15/215 (6%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
            +DG+     G T  +A V   +  K       D   + V Y   +++ G+      + +
Sbjct: 46  NADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVINVEYNVASFSSGE-----RKLK 100

Query: 82  SRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            +  +  + I+ +I R+  P+       ++E  + + ++Q D  +     ++ A   A++
Sbjct: 101 MKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQILQLDGGALH--AAINATCLAMI 158

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG--TQDAVLMVELEANQLSE 197
            +G+P    V+     + NG  +L+    E+   L +  +    +   L +    ++L  
Sbjct: 159 DAGIPMSDYVIACSAGFSNGSALLDLNYIEESAELPVLTAALLPKSGKLTMLSMESRLHL 218

Query: 198 DVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           +   D +      C  + E++++  +   K+P  I
Sbjct: 219 NHFQDVLNLATEGCNTLAESLNETVRKACKKPRPI 253


>gi|317124457|ref|YP_004098569.1| RNAse PH [Intrasporangium calvum DSM 43043]
 gi|315588545|gb|ADU47842.1| RNAse PH [Intrasporangium calvum DSM 43043]
          Length = 256

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 25/204 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  +  R++    G L    GS L   G T+ +   +      E     L G    
Sbjct: 11  RHDGRAPDETREVRITRGWLDHAEGSVLVEFGRTRVLCAASFT----EGVPRWLKGRGTG 66

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  V+   A    T+ +  +
Sbjct: 67  WVTAEYAMLPRATNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDTKALGENTIVLDCD 126

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL D                P++  VA +++G+V        
Sbjct: 127 VLQADGGTRTAAITGAYVALADAIEDARARGLIAKGAQPLTGSVAAVSVGIV----GGRA 182

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG 499
           + D+   ED     D  V  T  G
Sbjct: 183 VIDLDYPEDSTAETDMNVVMTGDG 206



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 25/188 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++  G +   ++G+VL  +G T VL    +   +     G+    +T  Y     A 
Sbjct: 21  REVRITRGWL-DHAEGSVLVEFGRTRVLCAASFTEGVPRWLKGRGTGWVTAEYAMLPRAT 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    +  R       ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 80  NTRSDRESVK-GRIGGRTHEISRLIGRSLRAVIDTKALGENTIVLDCDVLQADGG--TRT 136

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLN---PRLDEDQG 172
            ++  A  AL  +               P  G V    V  + G+ V++   P     + 
Sbjct: 137 AAITGAYVALADAIEDARARGLIAKGAQPLTGSVAAVSVGIVGGRAVIDLDYPEDSTAET 196

Query: 173 SLDLFVSG 180
            +++ ++G
Sbjct: 197 DMNVVMTG 204


>gi|269955862|ref|YP_003325651.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
 gi|269304543|gb|ACZ30093.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
          Length = 262

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 28/252 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR  + +R +    G L    GS L   G T+ +   +      E       G+  
Sbjct: 19  PRADGRAPDELRAVKITRGWLDAAEGSVLVEFGGTRVLCAASFT----EGVPRWKKGSGE 74

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  ++  +A    T+ +  
Sbjct: 75  GWVTAEYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAIIDVSALGENTIVLDC 134

Query: 428 EITESDGSSSMATVCGSSLALMD------------AGVP-ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL D             G   ++  V+ +++G+V    D +
Sbjct: 135 DVLQADGGTRTAAITGAYVALADAVAWGRRHGHIKGGKEVLTDSVSAVSVGIV----DGV 190

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG--RLHI 531
            + D+   ED     D  V  T SG    +Q   + G      +   L  A  G  RL  
Sbjct: 191 PMLDLPYVEDVRAGTDMNVVVTGSGTFVEVQGTAEHGAFDRAELDALLDLAVAGNARLAE 250

Query: 532 LNEMSKVLSESR 543
           L   +     +R
Sbjct: 251 LQRAALAEEPAR 262



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL    +   +   K G     +T  Y     A          +  R
Sbjct: 42  AEGSVLVEFGGTRVLCAASFTEGVPRWKKGSGEGWVTAEYAMLPRATNTRSDRESVK-GR 100

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
                  ISR+I RS+R +       E  ++   +V+Q D        ++  A  AL  +
Sbjct: 101 VGGRTHEISRLIGRSLRAIIDVSALGENTIVLDCDVLQADGG--TRTAAITGAYVALADA 158

Query: 142 --------GLP-----FEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAV 185
                    +          V    V  ++G  +L+ P +++ +    +++ V+G+   V
Sbjct: 159 VAWGRRHGHIKGGKEVLTDSVSAVSVGIVDGVPMLDLPYVEDVRAGTDMNVVVTGSGTFV 218

Query: 186 LMVELEANQ 194
             V+  A  
Sbjct: 219 -EVQGTAEH 226


>gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
 gi|237884943|gb|EEP73771.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
          Length = 241

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 27/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G      GS L   G T+ +   ++     E       G+   
Sbjct: 3   RPDGRLPDQLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVT----EGVPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    ++ +  +
Sbjct: 59  WVTAEYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVP---ISKPVAGIAMGLVKDGDDFI 474
           + ++DG +  A V G+ +AL D           AG P   + + VA +++G++       
Sbjct: 119 VLQADGGTRTAAVTGAYVALHDAVSWLAARKALAGKPEKVMHRSVAAVSVGVIAGE---- 174

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
              D+  +ED    +D  V  T SG    +Q   + G  + + +   L  A  G   +  
Sbjct: 175 ARLDLCYEEDVAAEVDMNVVCTGSGEFVEVQGTGESGVFARDQLDALLDLAVAGCAELAE 234

Query: 534 EMSKVLS 540
              K LS
Sbjct: 235 AQRKALS 241



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 76/216 (35%), Gaps = 26/216 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL T      +   + G     +T  Y     A          +  R  
Sbjct: 27  GSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTAEYAMLPRATNTRSDRESVK-GRVG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I RS+R         E  V+   +V+Q D        ++  A  AL     
Sbjct: 86  GRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQADGG--TRTAAVTGAYVALHDAVS 143

Query: 139 ------MLSGLP---FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV- 185
                  L+G P       V    V  I G+  L+   +ED   +  +++  +G+ + V 
Sbjct: 144 WLAARKALAGKPEKVMHRSVAAVSVGVIAGEARLDLCYEEDVAAEVDMNVVCTGSGEFVE 203

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +    E+   + D +   +      C  + EA  K 
Sbjct: 204 VQGTGESGVFARDQLDALLDLAVAGCAELAEAQRKA 239


>gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
 gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
          Length = 258

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPG----VPRWRKDSGL 73

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 74  GWVTAEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDC 133

Query: 428 EITESDGSSSMATVCGSSLALMDA--------GVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL+DA         +      +   V+ +++G++    +  
Sbjct: 134 DVLQADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVI----NGT 189

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G
Sbjct: 190 PMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKG 243



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 23/186 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 43  GSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVTAEYAMLPRATSERTDRESVR-GKIG 101

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL+    
Sbjct: 102 GRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGG--TRTASVTGAYVALVDAVN 159

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LMV 188
                     +    +  V    V  ING  +L+ P +++ Q   D+ V+ T     + +
Sbjct: 160 WAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIEI 219

Query: 189 ELEANQ 194
           +  A  
Sbjct: 220 QGTAEH 225


>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
          Length = 246

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAK---- 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                  +     Y+    +T E        R+ +      ++A+   +         + 
Sbjct: 61  --GNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DG++    +  ++LAL+DAG+ +++ +      L K     I L+DIS  E+
Sbjct: 119 IYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFEE 175

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             G     VA   T   I  ++M  +        ++       R    IL 
Sbjct: 176 VSGGPKLTVAALPTAEKIAFLEMSERFHIDHLGTVIETAMAGCREIRDILE 226



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 14/205 (6%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q DG+     G T VLA V      K  Q    +   Y + T++  +      +   R  
Sbjct: 35  QPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAE-----RKNRPRGD 89

Query: 86  ENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
              +     + +++          +++  + + V+Q D  +    V++ AA+ AL+ +G+
Sbjct: 90  RKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYA--VALNAATLALIDAGI 147

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQDAVLMVELEANQLSEDV 199
                +V            L      ++ S    L +    T + +  +E+       D 
Sbjct: 148 CLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPTAEKIAFLEMSERFH-IDH 206

Query: 200 VLDAIIFGHNECKPVIEAISKLAKM 224
           +   I      C+ + + +    K 
Sbjct: 207 LGTVIETAMAGCREIRDILEAAVKE 231


>gi|319942267|ref|ZP_08016582.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
 gi|319804140|gb|EFW01040.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
          Length = 277

 Score =  141 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 28/221 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV--VTLGTREDEQYVDSLSGT 369
            R DGR  + +R +       +   GS L   GDT  +    VT+G        + L G 
Sbjct: 34  PRPDGRAVDALRPVEITRRFTKYAEGSVLMCAGDTHVLCTASVTVG------VPNFLRGK 87

Query: 370 QRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y  LP +TG  +      G  + R     RL  R++  V+ +     +T++I
Sbjct: 88  GEGWVTAEYGLLPRSTGTRTDREAARGKQTGRTQEIQRLIGRSLRAVVDRKKLGEHTIQI 147

Query: 426 VSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +AL D           +  PI   V+ +++G+        
Sbjct: 148 DCDVLQADGGTRCASITGAWIALRDAVDWMLAKGMISEDPILAQVSAVSVGMWSGEP--- 204

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
            + D++  ED     D  V  T +G    +Q   +    SE
Sbjct: 205 -VLDLNYAEDSASDTDMNVVMTSAGKYVEIQGTAEGDPFSE 244



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 87/236 (36%), Gaps = 24/236 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+++ T R  + ++G+VL   G+T VL T    V   +   G+    +T  Y     + 
Sbjct: 45  RPVEI-TRRFTKYAEGSVLMCAGDTHVLCTASVTVGVPNFLRGKGEGWVTAEYGLLPRST 103

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHV 128
           G           + T     I R+I RS+R +    K  ++  Q+  +V+Q D       
Sbjct: 104 G-TRTDREAARGKQTGRTQEIQRLIGRSLRAVVDRKKLGEHTIQIDCDVLQADGG--TRC 160

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS---L 174
            S+  A  AL           M+S  P    V    V   +G+ VL+    ED  S   +
Sbjct: 161 ASITGAWIALRDAVDWMLAKGMISEDPILAQVSAVSVGMWSGEPVLDLNYAEDSASDTDM 220

Query: 175 DLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
           ++ ++     V +    E +  SE  +   +         +     K     A+  
Sbjct: 221 NVVMTSAGKYVEIQGTAEGDPFSEGDLAKLLALAKKGNAELAAFQRKALTEKAEAK 276


>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
 gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
          Length = 249

 Score =  141 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 104/248 (41%), Gaps = 12/248 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ ++ +R+DGR    +R I  ++G+ ++  GS+   +G+T+ +  V  G  + +    
Sbjct: 6   ELLSEQGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGPHQAKAKK- 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S          Y+    +T E        R+        ++A+   +         + 
Sbjct: 64  --SEGNDLIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQID 121

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG++   ++  ++LAL+DAG+ +++ V      L K     I L+DIS  E+
Sbjct: 122 IYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSN---IPLTDISHIEE 178

Query: 485 HLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             G     +A   T   I  M+M  +      + +   ++ A  G   I + +   + E 
Sbjct: 179 VSGGPKLTIAALPTAEKIAFMEMSER---FHIDQLETVIETAMAGCREIRDILEAAVKEH 235

Query: 543 RLQLGEFT 550
            + +G   
Sbjct: 236 LIHIGSAA 243



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           R +K + G    Q DG+     G T VLA V      K    +G D   +   Y + T++
Sbjct: 24  RHIKCKLGVF-EQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGND-LIINCQYSQATFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
             +      +   R           + +++          +++  + + V+Q D  +   
Sbjct: 82  TAE-----RKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGANYA- 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQD 183
            VS+ AA+ AL+ +G+     VV            L      ++ S    L +    T +
Sbjct: 136 -VSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVSGGPKLTIAALPTAE 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            +  +E+       D +   I      C+ + + +    K 
Sbjct: 195 KIAFMEMSERFH-IDQLETVIETAMAGCREIRDILEAAVKE 234


>gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018]
 gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 254

 Score =  141 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 26/250 (10%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R DGRD + +R +           GS L   G+T+ +   T               T
Sbjct: 12  KPIRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIG----VPRWRRDT 67

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E +      G    R     RL  R +  V+   A     ++I
Sbjct: 68  GLGWVTAEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQI 127

Query: 426 VSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A++ G+ +AL+D             A   +   V+ +++G++    +
Sbjct: 128 DCDVLQADGGTRTASITGAYVALVDALNWAEKHKHIRSAKNVLKDSVSAVSVGVI----N 183

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              + D+   ED     D  VA T SG    +Q   +    + + + + L  A +G   +
Sbjct: 184 GTPMLDLPYVEDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFNRDELNVLLDLAAKGNREL 243

Query: 532 LNEMSKVLSE 541
                  LS+
Sbjct: 244 QAAQRAALSQ 253



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVVYD-RSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +     +  +D     +T  Y     A  +       +  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTIGVPRWRRDTGLGWVTAEYSMLPRATAERTDRESVK-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +       E   Q+  +V+Q D        S+  A  AL     
Sbjct: 98  GRTHEISRLIGRCLRGVIDMKAMGECLIQIDCDVLQADGG--TRTASITGAYVALVDALN 155

Query: 139 ------MLSGLP--FEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                  +       +  V    V  ING  +L+ P +++ Q    +++ ++G+ + +  
Sbjct: 156 WAEKHKHIRSAKNVLKDSVSAVSVGVINGTPMLDLPYVEDSQAMTDMNVAMTGSGNFI-E 214

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A       D +   +       + +  A 
Sbjct: 215 IQGTAEHRPFNRDELNVLLDLAAKGNRELQAAQ 247


>gi|301168382|emb|CBW27972.1| putative ribonuclease [Bacteriovorax marinus SJ]
          Length = 234

 Score =  141 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 21/234 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
             RDI    G+     GS +   G+T+  +  T+    +E     L    +      Y+ 
Sbjct: 8   QPRDIKFTAGINPYAAGSVIAEFGNTKVHITATV----EESVPRFLKDKGQGWITAEYSM 63

Query: 381 LPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
           LP +T   +R      S R     RL  R++  ++        +++I  ++  +DG +  
Sbjct: 64  LPSSTHTRNRRERSKVSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVLVADGGTRT 123

Query: 439 ATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            ++ G+ +AL           +    PI +P+A +++G+   G    +++D++ DED   
Sbjct: 124 TSISGAYVALEMAVEKLLESGLIEETPIKEPLAALSVGINSAGK---VIADLNYDEDSTC 180

Query: 488 HMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
             D  +  T SG    +Q   +    S + +   L+ A      +  E  KVLS
Sbjct: 181 ETDMNIVMTKSGKFIEVQGTAEGEAFSRDELNAILECATEAIQSVFKEQEKVLS 234



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 83/229 (36%), Gaps = 27/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +K   G I   + G+V+A +G T V  T   + S+      +    +T  Y     + 
Sbjct: 10  RDIKFTAG-INPYAAGSVIAEFGNTKVHITATVEESVPRFLKDKGQGWITAEYSMLPSS- 67

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                   R  S+ +     I R+I RS+R +    K  +   Q+  +V+  D       
Sbjct: 68  --THTRNRRERSKVSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVLVADGG--TRT 123

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDY-INGQYVLNPRLDED---QGS 173
            S+  A  AL           ++   P + P+    V     G+ + +   DED   +  
Sbjct: 124 TSISGAYVALEMAVEKLLESGLIEETPIKEPLAALSVGINSAGKVIADLNYDEDSTCETD 183

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++ +   + +    E    S D +   +       + V +   K+
Sbjct: 184 MNIVMTKSGKFIEVQGTAEGEAFSRDELNAILECATEAIQSVFKEQEKV 232


>gi|160872895|ref|ZP_02063027.1| ribonuclease PH [Rickettsiella grylli]
 gi|159121694|gb|EDP47032.1| ribonuclease PH [Rickettsiella grylli]
          Length = 237

 Score =  141 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 22/244 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R I+          GS     G T+ +   ++           L G+  
Sbjct: 1   MRASQRALDELRAITLIRSYTNYAEGSVWVAFGQTKVLCTASIIPG----VPKFLKGSNH 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G  + R +   RL  R +   +        T+ +  
Sbjct: 57  GWITAEYGMLPRATHTRSDREASRGKQTGRSLEIQRLIGRVLRMSVDLKQLGENTIFLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISK---------PVAGIAMGLVKDGDDFIILSD 478
           ++ ++DG +  A + G+S+AL DA   +            VA +++G+         L D
Sbjct: 117 DVIQADGGTRTAAITGASVALKDALATMKGEMKYNPWCFLVAAVSVGIY----KGQALLD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    MD  V  T+ G +  +Q   +    S+  +   L  A+ G    + +  +
Sbjct: 173 LDYEEDSHAEMDMNVIMTEQGKLLEIQATAEKAAFSKQQLNQLLNLAETGIKQCVKKQKE 232

Query: 538 VLSE 541
           VL E
Sbjct: 233 VLGE 236



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 29/217 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGYLR 79
           ++G+V   +G+T VL T     S+  G   F        +T  Y     A          
Sbjct: 24  AEGSVWVAFGQTKVLCTA----SIIPGVPKFLKGSNHGWITAEYGMLPRAT-HTRSDREA 78

Query: 80  RESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAA 137
              + T   + I R+I R +R     K    N   +  +V+Q D        ++  AS A
Sbjct: 79  SRGKQTGRSLEIQRLIGRVLRMSVDLKQLGENTIFLDCDVIQADGG--TRTAAITGASVA 136

Query: 138 L--MLSGL-------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ-DAVL 186
           L   L+ +       P+   V    V    GQ +L+   +ED    +D+ V  T+   +L
Sbjct: 137 LKDALATMKGEMKYNPWCFLVAAVSVGIYKGQALLDLDYEEDSHAEMDMNVIMTEQGKLL 196

Query: 187 MVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKL 221
            ++  A     S+  +   +       K  ++   ++
Sbjct: 197 EIQATAEKAAFSKQQLNQLLNLAETGIKQCVKKQKEV 233


>gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
 gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
          Length = 256

 Score =  141 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 103/252 (40%), Gaps = 26/252 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR ++ +R IS    +   + GS L   G+T+ I    +    +E   + +   + 
Sbjct: 2   PRNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMI----EESIPNWMKFQKV 57

Query: 372 --NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP +T E  +     G    R +   RL  R++  V+      P TL I
Sbjct: 58  PGGWLTAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCI 117

Query: 426 VSEITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ +A            +    PI + VA +++G+V       
Sbjct: 118 DCDVLQADGGTRTASITGACVAASLAVEKLIEKKLLTKSPIKQLVAAVSVGVVNGEP--- 174

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D++  ED    +D  +  T +G    +Q   +    SE+ +   +   K+G   ++ 
Sbjct: 175 -MLDLNYLEDKDASVDMNLVMTANGQFVEVQGSGEEQTFSESELAAMMTLGKKGIGELIA 233

Query: 534 EMSKVLSESRLQ 545
                +S +  +
Sbjct: 234 AQRAAISSASAE 245



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 92/240 (38%), Gaps = 24/240 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF--FP---LTVNYQERTY 68
           RP+   T  IA  S G+VL   G T V+ + + + S+ +   F   P   LT  Y    Y
Sbjct: 13  RPISF-TPNIAPHSTGSVLVAAGNTRVICSAMIEESIPNWMKFQKVPGGWLTAEYSMLPY 71

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSP 126
           +  +       +  R     + I R+I RS+R +            +  +V+Q D  +  
Sbjct: 72  STLERKQRDSAK-GRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCIDCDVLQADGGTRT 130

Query: 127 HVV--SMVAASAAL-------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
             +  + VAAS A+       +L+  P +  V    V  +NG+ +L+    ED+     +
Sbjct: 131 ASITGACVAASLAVEKLIEKKLLTKSPIKQLVAAVSVGVVNGEPMLDLNYLEDKDASVDM 190

Query: 175 DLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVI 232
           +L ++     V  V+    + +  E  +   +  G      +I A        + E    
Sbjct: 191 NLVMTANGQFV-EVQGSGEEQTFSESELAAMMTLGKKGIGELIAAQRAAISSASAETPEP 249


>gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium abscessus ATCC 19977]
 gi|226736919|sp|B1MLZ3|RNPH_MYCA9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169240542|emb|CAM61570.1| Probable ribonuclease PH [Mycobacterium abscessus]
          Length = 258

 Score =  141 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 93/259 (35%), Gaps = 17/259 (6%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R ++   G      GS L   G T+ +   +      E       G+ 
Sbjct: 2   SRREDGRQDDELRPVTITRGFTSHPAGSVLIEFGQTRVMCTAS----ATEGVPRWRKGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP +T   S      G    R     RL  R++   +  +A    T+ I 
Sbjct: 58  LGWLTAEYAMLPASTHTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPI--------SKPVAGIAMGLVKDGDDFIILSD 478
            ++ ++DG +  A + G+ +AL DA   +         +P++     +     D  +  D
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTYLAAHGKLADDEPLSCAIAAVSVGVVDGRVRVD 177

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  TD+G +  +Q   +    + + +   L  A      +     +
Sbjct: 178 LPYEEDSRAEVDMNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQLFVLQKE 237

Query: 538 VLSESRLQLGEFTPRVEIM 556
            L+     +    P+ +  
Sbjct: 238 ALALPYPGVLPDAPQKKAF 256



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 28/221 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G  +  + G+VL  +G+T V+ T      +   + G     LT  Y     + 
Sbjct: 14  RPVTITRGFTSHPA-GSVLIEFGQTRVMCTASATEGVPRWRKGSGLGWLTAEYAMLPAST 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                     + R       ISR+I RS+R          N   +  +V+Q D       
Sbjct: 73  -HTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL  +              P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAYVALADAVTYLAAHGKLADDEPLSCAIAAVSVGVVDGRVRVDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNE 210
           + V  T    L+      +       + D +LDA +   ++
Sbjct: 190 MNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQ 230


>gi|254673252|emb|CBA08277.1| ribonuclease PH [Neisseria meningitidis alpha275]
          Length = 261

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 16/234 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++RDI      L  T GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASI----DENVPPFLRGKNQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G  S R     RL  R++  V+         + I  ++ ++
Sbjct: 65  EYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG +  A++ G+ +A       L+  G+    P+      +     + + L D+   ED 
Sbjct: 125 DGGTRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 486 LGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
               D  +  T SG I  +Q   +    S + +   +  A++G   +    +K 
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELAATPAKC 238



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 39/238 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +K+ T      +DG+ L   G T V+ T   D ++     G++   +T  Y     + 
Sbjct: 15  RDIKI-TPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGMLPAST 73

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  +RRE    + +     I R+I RS+R +       E Q++   +V+Q D    
Sbjct: 74  A----SRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG-- 127

Query: 126 PHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL +           S  P    V    V  +NG  +L+    ED    
Sbjct: 128 TRTASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCD 187

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
             +++ ++ +   ++ ++  A     S D +   +           + I +LA   AK
Sbjct: 188 SDVNIVMTAS-GKIIEIQGTAEDAPFSLDELGKLVALAQ-------KGIGELAATPAK 237


>gi|17227565|ref|NP_484113.1| ribonuclease PH [Nostoc sp. PCC 7120]
 gi|21759403|sp|Q8Z0M2|RNPH_ANASP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17135047|dbj|BAB77593.1| ribonuclease PH [Nostoc sp. PCC 7120]
          Length = 247

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 22/226 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R I+      +   GS L I G+T+ +  V++     E     L+G+ + 
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVA----ESVPKFLTGSGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   L   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQQRHERELLKLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A + G  +AL +              P+   +A +++GL++         D+
Sbjct: 121 QADAGTRTAAITGGFVALAEAISQLLQRGVLERSPLCGQIAAVSVGLLEQE----AYLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQA 524
           +  ED    +DF V    + GI  +Q   + G  S   +   L  A
Sbjct: 177 NYIEDVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCA 222



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 24/199 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLK--DGQDFFPLTVNYQERTYAV 70
           RP+   T +  R + G+VL   GET VL TV V +   K   G     LT  Y+    A 
Sbjct: 15  RPINFHT-KFTRFAPGSVLTICGETKVLCTVSVAESVPKFLTGSGKGWLTAEYRMLPSA- 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                 + R   + +     I R+I RS+R    F    +    V  +V+Q D       
Sbjct: 73  --TQQRHERELLKLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQADAG--TRT 128

Query: 129 VSMVAASAAL--MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDL 176
            ++     AL   +S L         P  G +    V  +  +  L+    ++   ++D 
Sbjct: 129 AAITGGFVALAEAISQLLQRGVLERSPLCGQIAAVSVGLLEQEAYLDLNYIEDVAATVDF 188

Query: 177 FVSGTQD-AVLMVELEANQ 194
            V   ++  ++ V+  A +
Sbjct: 189 NVVMNKNLGIIEVQGTAEE 207


>gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32]
 gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32]
          Length = 258

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 18/253 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +RDI    G  Q   GS L   G+T+ +   ++     E      +G+   
Sbjct: 3   RKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASVT----EGVPRWRAGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++   +   A    T+ I  +
Sbjct: 59  WVTAEYAMLPSATNTRGDRESVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISK--------PVAGIAMGLVKDGDDFIILSDIS 480
           + ++DG +  A V G  +AL DA   +S         P++     +     D  +  D+ 
Sbjct: 119 VIQADGGTRTAAVTGGYVALADAITWLSAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLP 178

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            +ED    +D  V  TD+G +  +Q   +    + + +   L  A  G   +    ++ L
Sbjct: 179 YEEDSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDMALAGCAELTRLQNEAL 238

Query: 540 SESRL-QLGEFTP 551
           +     +L E  P
Sbjct: 239 ALPYPGELPEPRP 251



 Score = 44.1 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 28/233 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL        +   + G     +T  Y     A     G     + R  
Sbjct: 27  GSVLIEFGNTRVLCAASVTEGVPRWRAGSGLGWVTAEYAMLPSATN-TRGDRESVKGRIG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVV---------SMVAA 134
                ISR+I RS+R         E  ++   +V+Q D  +    V         ++   
Sbjct: 86  GRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQADGGTRTAAVTGGYVALADAITWL 145

Query: 135 SAALMLSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVELEA 192
           SAA  L+   P    V    V  ++G+  L+ P  ++ +  +D+ V  T    L+     
Sbjct: 146 SAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDAGTLIEVQGT 205

Query: 193 NQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
            +       + D +LD  + G   C  +    ++   +    P  +      K
Sbjct: 206 GEGATFARSTLDTMLDMALAG---CAELTRLQNE--ALALPYPGELPEPRPDK 253


>gi|114326689|ref|YP_743846.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
 gi|114314863|gb|ABI60923.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
          Length = 250

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR ++ +R +S + G      GS L   G T+ +   +   R        L GT + 
Sbjct: 10  RPSGRAADALRSVSLETGFAHHAEGSCLIRMGRTEVLCTASAEPR----IPGFLRGTGKG 65

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT +        G  S R     RL  RA+  V+ + A    ++ +  +
Sbjct: 66  WVTAEYGMLPRATHKRGDREAARGKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLDCD 125

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +  +DG +  A+V G+ +AL           +   VP+   VA ++ G+V        + 
Sbjct: 126 VLNADGGTRCASVTGAYVALSLAFHKMVKAGVLKAVPLHGQVAAVSCGVV----GGQPVL 181

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED     D     TD  GI  +Q   +    SE      L  A++G   +     
Sbjct: 182 DLDYIEDSGAEADSNFVLTDAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFTMQR 241

Query: 537 KV 538
             
Sbjct: 242 DA 243



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 75/228 (32%), Gaps = 30/228 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK-DGQDFFP----LTVNYQERTY 68
           R + LETG  A  ++G+ L   G T VL T       +  G         +T  Y     
Sbjct: 20  RSVSLETG-FAHHAEGSCLIRMGRTEVLCTA--SAEPRIPGFLRGTGKGWVTAEYGMLPR 76

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSP 126
           A  K       R  + +     I R+I R++R +  +    E  +    +V+  D     
Sbjct: 77  ATHKRGDREAAR-GKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLDCDVLNADGG--T 133

Query: 127 HVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
              S+  A  AL L+            +P  G V       + GQ VL+    ED   + 
Sbjct: 134 RCASVTGAYVALSLAFHKMVKAGVLKAVPLHGQVAAVSCGVVGGQPVLDLDYIEDSGAEA 193

Query: 173 SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAI 218
             +  ++     ++ ++  A     SE      +         +    
Sbjct: 194 DSNFVLT-DAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFTMQ 240


>gi|257452055|ref|ZP_05617354.1| ribonuclease PH [Fusobacterium sp. 3_1_5R]
 gi|317058603|ref|ZP_07923088.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
 gi|313684279|gb|EFS21114.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
          Length = 249

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R+I           GS L   G+T+ I   ++     E+    +  T + 
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASV----SEKVPSFIKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ +P ATGE ++     G  S R +   RL  RA+   +        T+ +  +
Sbjct: 59  WLTAEYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       L+  G     P+   VA +++G      +  I  
Sbjct: 119 VIQADGGTRTASITGAFVAMAIAAAKLLREGTITDSPVLSSVAAVSVGKC----EGNIFL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +D  V   D G    +Q   +        +   L  A+ G   +L +  
Sbjct: 175 DLNYVEDSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNTLLDMAEIGIHQLLEKQR 234

Query: 537 KVLSESRLQL 546
           +VL E    +
Sbjct: 235 EVLGEDYEII 244



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 19/162 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +           LT  Y     A G+        + +
Sbjct: 25  AEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTAEYSMIPRATGE-RNQREAAKGK 83

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL--- 138
            +   + I R+I R++R      K  +    +  +V+Q D        S+  A  A+   
Sbjct: 84  LSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQADGG--TRTASITGAFVAMAIA 141

Query: 139 --------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
                    ++  P    V    V    G   L+    ED  
Sbjct: 142 AAKLLREGTITDSPVLSSVAAVSVGKCEGNIFLDLNYVEDSS 183


>gi|294791355|ref|ZP_06756512.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
 gi|294457826|gb|EFG26180.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
          Length = 259

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 26/260 (10%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
             ++      K +R DGR  + +R ++   G  Q   GS L   G T+ +   T      
Sbjct: 5   KDLLDDTQALKAIRADGRAVDQLRPVTITRGWTQAPEGSVLIECGQTRVLCTATF----S 60

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQ 415
           +        +        Y  +P AT +     S  G    R     RL  R +  ++  
Sbjct: 61  QGVPRWRKDSGLGWVTAEYAMIPRATADRTDRESVRGKIGGRTHEISRLIGRVLRGIVDL 120

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------------GVPISKPVAGI 462
            A     ++I  ++ ++DG +  A++ G+ +AL DA                +   V+ +
Sbjct: 121 GALGENMIQIDCDVLQADGGTRTASITGAYVALADAVSWAKKNKKIKAAKRVLLDQVSAV 180

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMAL 521
           ++G++    +   + D+   ED     D  VA T SG    +Q   +    S + +   L
Sbjct: 181 SVGII----NGTPMLDLPYTEDSQAMTDMNVAMTASGKFIEIQGTAEHRPFSRDELNTLL 236

Query: 522 QQAKRGRLHILNEMSKVLSE 541
             A++G   +     + L +
Sbjct: 237 DLAQKGNTQLQELQKQALKK 256



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 30/235 (12%)

Query: 14  RPLKLETGRIARQS-DGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYA 69
           RP+ +  G    Q+ +G+VL   G+T VL T  + + +   +       +T  Y     A
Sbjct: 28  RPVTITRGW--TQAPEGSVLIECGQTRVLCTATFSQGVPRWRKDSGLGWVTAEYAMIPRA 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPH 127
                     R  +       ISR+I R +R +       E   Q+  +V+Q D      
Sbjct: 86  TADRTDRESVR-GKIGGRTHEISRLIGRVLRGIVDLGALGENMIQIDCDVLQADGG--TR 142

Query: 128 VVSMVAASAALMLSGLPFEGP--------------VVGAQVDYINGQYVLNPRLDEDQGS 173
             S+  A  AL  + + +                 V    V  ING  +L+    ED  +
Sbjct: 143 TASITGAYVALADA-VSWAKKNKKIKAAKRVLLDQVSAVSVGIINGTPMLDLPYTEDSQA 201

Query: 174 L-DLFVSGTQ-DAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + D+ V+ T     + ++  A     S D +   +         + E   +  K 
Sbjct: 202 MTDMNVAMTASGKFIEIQGTAEHRPFSRDELNTLLDLAQKGNTQLQELQKQALKK 256


>gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301]
 gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942]
 gi|61215786|sp|Q5N4V3|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123557014|sp|Q31PB6|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942]
          Length = 238

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 88/241 (36%), Gaps = 22/241 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R I+ Q    Q   GS L   G TQ +  VT+           L+G  +
Sbjct: 4   IRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTI----QAGVPRWLTGQGQ 59

Query: 372 NDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP AT +         S R     RL  R++   +        TL I +++
Sbjct: 60  GWLTAEYRMLPGATPDRQSREWLKLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADV 119

Query: 430 TESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++D  +    + GS +AL D              PI + +A +++ L+          D
Sbjct: 120 LQADAGTRTTAINGSWVALQDAIAQLIAQGELTESPIQRSIAAVSVALIGGE----AFLD 175

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
               ED    +D  V   D G +  +Q   +    S   +   L  A++G   I     +
Sbjct: 176 PDYPEDVQADVDCNVVMGDRGELIEIQGTAEANPFSRTQLNHILDLAEQGIAQIQAAQLE 235

Query: 538 V 538
            
Sbjct: 236 A 236



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VLA +G+T VL TV     +     GQ    LT  Y+      G  P    R   + +
Sbjct: 29  GSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWLTAEYRMLP---GATPDRQSREWLKLS 85

Query: 86  ENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHVVSMVAASAALM---- 139
                I R+I RS+R     K     T +I  +V+Q D        ++  +  AL     
Sbjct: 86  GRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQADAG--TRTTAINGSWVALQDAIA 143

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLD-LFVSGTQDAVLMVEL 190
                  L+  P +  +    V  I G+  L+P   ED Q  +D   V G +  ++ ++ 
Sbjct: 144 QLIAQGELTESPIQRSIAAVSVALIGGEAFLDPDYPEDVQADVDCNVVMGDRGELIEIQG 203

Query: 191 --EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             EAN  S   +   +         +  A  + 
Sbjct: 204 TAEANPFSRTQLNHILDLAEQGIAQIQAAQLEA 236


>gi|167720743|ref|ZP_02403979.1| ribonuclease PH [Burkholderia pseudomallei DM98]
          Length = 219

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 24/227 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +RD+       +   G+ L   GDT+ I   ++     E+  + L    +      Y  L
Sbjct: 1   MRDVRITRHYTKHAEGAVLVEFGDTKVICTASVA----ERVPEFLRERGQGWLTAEYGML 56

Query: 382 PCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT   S      G  + R     RL  RA+  V    A  P TL +  ++ ++DG + 
Sbjct: 57  PRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQADGGTR 116

Query: 438 MATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A++ G+ +A  D           A  PI+  VA I++G+         + D+  DED  
Sbjct: 117 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVF----GGTPVLDLDYDEDSA 172

Query: 487 GHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
              D  V  T   G   +Q   +    S   M   L  A+ G   ++
Sbjct: 173 CDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELV 219



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 26/223 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +++ T    + ++GAVL  +G+T V+ T      + +    +    LT  Y     A 
Sbjct: 2   RDVRI-TRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDLESSPH 127
                       + T     I R+I R++R +F   +   +    +  +V+Q D      
Sbjct: 61  -HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRT-LHLDCDVIQADGG--TR 116

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  A             ++  P    V    V    G  VL+   DED      
Sbjct: 117 TASITGAFVAAHDAVTKLVAAGRIARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTD 176

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVI 215
           +++ ++G    V +    E    S   +   +         ++
Sbjct: 177 MNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELV 219


>gi|162147173|ref|YP_001601634.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785750|emb|CAP55321.1| putative Ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 275

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R IS + G      GS+L   G T+ +   T+ +R        L G  + 
Sbjct: 31  RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESR----VPPFLRGQGKG 86

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G  S R     RL  R++  V+   A    ++ +  +
Sbjct: 87  WVTAEYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCD 146

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +  +DG +  A++ G+ +AL           + A +P++  VA ++ GL   G     + 
Sbjct: 147 VLNADGGTRCASITGAWVALRLALETLVRNRVLARLPLTAQVAAVSCGLTGAG----AVL 202

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  DED     D     T+  GI  +Q   +    +++     L+ A+ G   +     
Sbjct: 203 DLDYDEDSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQR 262

Query: 537 KVLSES 542
           + +  +
Sbjct: 263 QAVDAA 268



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E G  A  ++G+ L   G T VL     +  +     GQ    +T  Y     A 
Sbjct: 41  RAISIEPG-FAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTAEYGMLPRAT 99

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
               GG    + + +     I R+I RS+R +       E    V  +V+  D       
Sbjct: 100 -HTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNADGG--TRC 156

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLN 164
            S+  A  AL           +L+ LP    V            VL+
Sbjct: 157 ASITGAWVALRLALETLVRNRVLARLPLTAQVAAVSCGLTGAGAVLD 203


>gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2]
 gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2]
          Length = 246

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 30/246 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR- 371
           R DGR +  +R +  +  +++   GS +   GDT+ +   T          D L G +R 
Sbjct: 8   RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAAT--------IEDGLPGWRRA 59

Query: 372 ---NDFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                    Y  LP +TG  +R   G    R     RL  R++       A   +T+ I 
Sbjct: 60  SRSGWVTAEYAMLPASTGRRTRREFGQRRGRSQEIERLIGRSLRTATNLRALGEHTVTID 119

Query: 427 SEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G+ +AL DA            +P+   VA ++MGLV    D  +
Sbjct: 120 CDVIQADGGTRTAALTGAWVALHDALAAWVEAARIPRIPLVSQVAAVSMGLV----DGNV 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+   ED    +D  +  T S  I  +Q   +        +   L     G   ++  
Sbjct: 176 LLDLDYAEDSRAEVDMNLVCTQSREIVEIQGTGERTPFDRAHLDALLDLGFEGIERLIAL 235

Query: 535 MSKVLS 540
            ++V +
Sbjct: 236 QNEVTA 241



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 30/232 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R ++LE   + + + G+ +  +G+T VL     +  L   +       +T  Y     + 
Sbjct: 18  RRVRLERDVM-KNALGSCMVEFGDTRVLCAATIEDGLPGWRRASRSGWVTAEYAMLPAST 76

Query: 71  G-KIPGGYLRRESRPTENEILISRMIDRS--IRPLFSKCYKNETQVIINVMQHDLESSPH 127
           G +    + +R  R  E E LI R +  +  +R L      +   +  +V+Q D      
Sbjct: 77  GRRTRREFGQRRGRSQEIERLIGRSLRTATNLRALGE----HTVTIDCDVIQADGG--TR 130

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  A  AL            +  +P    V    +  ++G  +L+    ED   +  
Sbjct: 131 TAALTGAWVALHDALAAWVEAARIPRIPLVSQVAAVSMGLVDGNVLLDLDYAEDSRAEVD 190

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVV-LDA-IIFGHNECKPVIEAISKLAK 223
           ++L  + +++ ++ ++    +   D   LDA +  G    + +I   +++  
Sbjct: 191 MNLVCTQSRE-IVEIQGTGERTPFDRAHLDALLDLGFEGIERLIALQNEVTA 241


>gi|229821215|ref|YP_002882741.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
 gi|229567128|gb|ACQ80979.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
          Length = 279

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 26/221 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R I    G L    GS L   G+T+ +   +              G+  
Sbjct: 14  VRADGRAPDDLRPIRITRGWLDAAEGSVLVEFGNTRVLCAASFT----AGVPRWRKGSGE 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT       S  G    R     RL  R++  V+   A    T+ +  
Sbjct: 70  GWVTAEYAMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRAVIDVAALGENTIVVDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDA---GVP----------ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL DA   G+           +   V+ +++G+V    D  
Sbjct: 130 DVLQADGGTRTAAITGAYVALADAVAWGLEHGEVRRGAHVLRDSVSAVSVGIV----DGA 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
            L D+   ED     D  V  T SG    +Q   +      
Sbjct: 186 PLLDLPYAEDVRAETDMNVVVTGSGSFVEVQGTAEGAPFDR 226



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 14  RPLKLETGRI-ARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYA 69
           RP+++  G + A  ++G+VL  +G T VL    +   +   + G     +T  Y     A
Sbjct: 25  RPIRITRGWLDA--AEGSVLVEFGNTRVLCAASFTAGVPRWRKGSGEGWVTAEYAMLPRA 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPH 127
                     R  R       ISR+I RS+R +       E  ++   +V+Q D      
Sbjct: 83  TNTRNDRESVR-GRIGGRTHEISRLIGRSLRAVIDVAALGENTIVVDCDVLQADGG--TR 139

Query: 128 VVSMVAASAALMLSGLPF--------------EGPVVGAQVDYINGQYVLNPRLDED--- 170
             ++  A  AL  + + +                 V    V  ++G  +L+    ED   
Sbjct: 140 TAAITGAYVALADA-VAWGLEHGEVRRGAHVLRDSVSAVSVGIVDGAPLLDLPYAEDVRA 198

Query: 171 QGSLDLFVSGTQDAV 185
           +  +++ V+G+   V
Sbjct: 199 ETDMNVVVTGSGSFV 213


>gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium intracellulare ATCC 13950]
          Length = 259

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 18/253 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +    G      GS L   G T+ +   ++     E       G+   
Sbjct: 4   REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVT----EGVPRWRKGSGLG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G  S R     RL  R++   +   A    T+ +  +
Sbjct: 60  WLTAEYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPI--------SKPVAGIAMGLVKDGDDFIILSDIS 480
           + ++DG +  A + G+ +AL DA   +         +P++     +     D  +  D+ 
Sbjct: 120 VLQADGGTRTAAITGAFVALADAVTYLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLP 179

Query: 481 GDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            +ED    +D  V  TD+G +  +Q   +      + +   L  A      +     + L
Sbjct: 180 YEEDARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREAL 239

Query: 540 SESRL-QLGEFTP 551
           ++    +L E  P
Sbjct: 240 AQPYPGELPEGAP 252



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 70/217 (32%), Gaps = 24/217 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+ T      +   + G     LT  Y     A           + R +
Sbjct: 28  GSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTAEYAMLPSAT-HTRSDRESVKGRLS 86

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I RS+R          N   V  +V+Q D        ++  A  AL     
Sbjct: 87  GRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQADGG--TRTAAITGAFVALADAVT 144

Query: 140 -------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVEL 190
                  LS   P    +    V  ++G+  ++ P  ++ +  +D+ V  T    L+   
Sbjct: 145 YLGAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEEDARAEVDMNVVATDTGTLVEVQ 204

Query: 191 EANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
              +        +   +      C  +  A  +    
Sbjct: 205 GTGEGATFPRSTLDKLLDVALAACDKLFAAQREALAQ 241


>gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacterium marinum M]
 gi|183177339|gb|ACC42449.1| ribonuclease RphA [Mycobacterium marinum M]
          Length = 276

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 92/261 (35%), Gaps = 17/261 (6%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           R  +     R DGR  + +R +    G  +   GS L   G T+ +   ++     E   
Sbjct: 12  RARVGVVSKREDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVT----EGVP 67

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQF 419
               G+        Y  LP AT   S      G    R     RL  R++   +   A  
Sbjct: 68  RWRKGSGLGWLTAEYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALG 127

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPIS--------KPVAGIAMGLVKDGD 471
             T+ +  ++ ++DG +  A + G+ +AL DA   ++        +P++     +     
Sbjct: 128 ENTIAVDCDVLQADGGTRTAAITGAYVALADAVNYLAAAGKLSDPRPLSCAIAAVSVGVV 187

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D  +  D+  +ED    +D  V  TD+G +  +Q   +      + +   L  A      
Sbjct: 188 DGRVRVDLPYEEDSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDT 247

Query: 531 ILNEMSKVLSESRLQLGEFTP 551
           +       L+     +    P
Sbjct: 248 LFAAQRDALALPYPGVLPEGP 268



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 25/232 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G       G+VL  +G T V+ T      +   + G     LT  Y     A 
Sbjct: 31  RPVVITRG-FTENPAGSVLIEFGRTKVMCTASVTEGVPRWRKGSGLGWLTAEYAMLPSAT 89

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                     + R       ISR++ RS+R          N   V  +V+Q D       
Sbjct: 90  -HTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQADGG--TRT 146

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 147 AAITGAYVALADAVNYLAAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEEDSRAEVD 206

Query: 176 LFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T    L+      +        +   +      C  +  A      +
Sbjct: 207 MNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQRDALAL 258


>gi|296533566|ref|ZP_06896135.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296266103|gb|EFH12159.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 239

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S Q G+ +   GS L   G T+ +   ++  R        L G   
Sbjct: 1   MRPSGRAADALRSVSLQPGVARHAEGSCLIRMGVTEVLCTASVEGR----VPPFLRGKGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+ + A    ++ +  
Sbjct: 57  GWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRKAMGEVSIVLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL             +  P+   VA I+ GL +       +
Sbjct: 117 DVITADGGTRCAAITGAWVALHQALEHCVTKNLISANPLRDQVAAISCGLWEGEP----I 172

Query: 477 SDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +    S+  ++  +  A++G   +    
Sbjct: 173 LDLEYVEDSAAQADANFVLTGKGGIVEVQGTAEGEPFSDAQLLGLMALARKGTAELFAAQ 232

Query: 536 SKVLSES 542
            + +  +
Sbjct: 233 RRAIGAA 239



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 26/233 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + L+ G +AR ++G+ L   G T VL T   +  +     G+    +T  Y     A 
Sbjct: 12  RSVSLQPG-VARHAEGSCLIRMGVTEVLCTASVEGRVPPFLRGKGEGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       + +     I R+I RS+R +  +    E  ++   +V+  D       
Sbjct: 71  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRKAMGEVSIVLDCDVITADGG--TRC 127

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            +S  P    V         G+ +L+    ED   Q   
Sbjct: 128 AAITGAWVALHQALEHCVTKNLISANPLRDQVAAISCGLWEGEPILDLEYVEDSAAQADA 187

Query: 175 DLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           +  ++G +  ++ V+   E    S+  +L  +         +  A  +     
Sbjct: 188 NFVLTG-KGGIVEVQGTAEGEPFSDAQLLGLMALARKGTAELFAAQRRAIGAA 239


>gi|86739583|ref|YP_479983.1| ribonuclease PH [Frankia sp. CcI3]
 gi|123765222|sp|Q2JEN8|RNPH_FRASC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86566445|gb|ABD10254.1| RNAse PH [Frankia sp. CcI3]
          Length = 247

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 88/240 (36%), Gaps = 15/240 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R ++   G  +   GS+L   G T+ +   ++ T           G+  
Sbjct: 2   IRADGRRPDELRQVTILRGWQEHAEGSALISAGRTRVLCAASVTTG----VPRWRKGSGL 57

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G  S R     RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYSMLPRATDTRNDRESVRGRISGRTHEISRLIGRSLRACIDLKALGENTIAIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA----GVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           ++  +DG +  A + G+ +AL+DA    G P    +      +         + D++  E
Sbjct: 118 DVLLADGGTRTAAITGAYVALVDAARWLGRP--DAIITSVSAVSVGVVKGEAMLDLAYSE 175

Query: 484 DHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           D     D  V  T   G   +Q   +       ++   L  A RG   +    ++ L   
Sbjct: 176 DSTADTDMNVVCTGADGFVEVQGTAEGTPFDRTMLDSLLDLAVRGCAQLTAIQTEALRGP 235



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 27  SDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L + G T VL            + G     +T  Y     A          R  R
Sbjct: 25  AEGSALISAGRTRVLCAASVTTGVPRWRKGSGLGWVTAEYSMLPRATDTRNDRESVR-GR 83

Query: 84  PTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAAL 138
            +     ISR+I RS+R     K    N   +  +V+  D        ++  A  AL
Sbjct: 84  ISGRTHEISRLIGRSLRACIDLKALGENTIAIDCDVLLADGG--TRTAAITGAYVAL 138


>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
 gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
          Length = 252

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 24/236 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED-EQYVDSLSGTQR 371
           R DGR  + +R+IS Q        GS L   GDT+ I    L  R        ++SG   
Sbjct: 6   RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSG--- 62

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP +T +  +     G    R +   RL  R++  V+       +TL +  
Sbjct: 63  GWLTAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDC 122

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LA       L+DAG     P    +A +++G+ +       +
Sbjct: 123 DVLQADGGTRTASITGAYLAARLAVQKLIDAGTLKENPFRDSIAAVSVGIYEGEP----V 178

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            D+   ED    +DF V  T  G    +Q   +    SE+ +   +  AK+G   +
Sbjct: 179 LDLPYIEDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKEL 234



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 24/229 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           R +  +    A  + G+VL ++G+T V+   + ++ +  G           LT  Y    
Sbjct: 16  REISFQA-DFAANATGSVLVSFGDTKVICGAMLEKRV-PGWMRAQNVSGGWLTAEYSMLP 73

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
           Y+          R  +     + I R+I RS+R +    K   +   V  +V+Q D  + 
Sbjct: 74  YSTLDRKQRDASR-GKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDVLQADGGTR 132

Query: 126 PHVV--SMVAASAALM-------LSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
              +  + +AA  A+        L   PF   +    V    G+ VL+ P +++   S+D
Sbjct: 133 TASITGAYLAARLAVQKLIDAGTLKENPFRDSIAAVSVGIYEGEPVLDLPYIEDRDASVD 192

Query: 176 LFVSGT-QDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
             V  T +   + ++    + +  ED +   I       K +    +  
Sbjct: 193 FNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKELSSMQAAF 241


>gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
 gi|166228292|sp|A0R1W8|RNPH_MYCS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118169152|gb|ABK70048.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
          Length = 259

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 91/258 (35%), Gaps = 25/258 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R +    G      GS L   G T+ +   ++     E       G+ 
Sbjct: 2   SRREDGRLDDELRPVVITRGFTSHPAGSVLVEFGQTRVMCTASVT----EGVPRWRKGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT + S      G    R     RL  R++   +   A    T+ I 
Sbjct: 58  QGWLTAEYAMLPAATHDRSDRESVKGRIGGRTQEISRLIGRSLRACIDLAALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFI 474
            ++ ++DG +  A + G+ +AL DA              P+S  +A +++G+V       
Sbjct: 118 CDVLQADGGTRTAAITGAYVALSDAVTWLAAAGRLSDPRPLSCAIAAVSVGVVDGRVRVD 177

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
               +   ED    +D  V  TD+G +  +Q   +      + +   L  A      +  
Sbjct: 178 ----LPYSEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQLFV 233

Query: 534 EMSKVLSESRLQLGEFTP 551
              + L      +    P
Sbjct: 234 LQREALDAPYPGVLPEGP 251



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 28/221 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G  +  + G+VL  +G+T V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPVVITRGFTSHPA-GSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                    +  R       ISR+I RS+R          N   +  +V+Q D       
Sbjct: 73  HDRSDRESVK-GRIGGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAYVALSDAVTWLAAAGRLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ------LSEDVVLDAIIFGHNE 210
           + V  T    L+      +       + D +LDA +    +
Sbjct: 190 MNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQ 230


>gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017]
 gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017]
          Length = 258

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 21/248 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR+DGRD + +R++    G  Q   GS L   G+T+ +   ++     E      +G+  
Sbjct: 2   VRVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASV----VEGVPRWRNGSGL 57

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT          G    R     RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           ++ ++DG +  A + G  +AL DA            P  KP++     +     D  +  
Sbjct: 118 DVIQADGGTRTAAITGGYVALADAITWLGAAGRLADP--KPLSAAVSAVSVGVVDGRVRL 175

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED    +D  V  TD+G +  +Q   +    + + +   L  A+ G   +    +
Sbjct: 176 DLPYEEDSRAEVDMNVVATDAGTLIEVQGTGEGATFTRSTLDKMLDLAQAGCAELARIQA 235

Query: 537 KVLSESRL 544
           + L+    
Sbjct: 236 EALAAPYP 243



 Score = 46.4 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 40/242 (16%)

Query: 29  GAVLATYGETVVLATV-VYDRSL--KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T VL    V +     ++G     +T  Y     A     G     + R  
Sbjct: 27  GSVLIEVGNTRVLCAASVVEGVPRWRNGSGLGWVTAEYSMLPSAT-HTRGDRESVKGRIG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLSGL 143
                ISR+I RS+R         E  ++   +V+Q D        ++     AL  + +
Sbjct: 86  GRTHEISRLIGRSLRSCIDLAALGENTIVIDCDVIQADGG--TRTAAITGGYVALADA-I 142

Query: 144 PFEGPVVGAQVDYI---------------NGQYVLN-PRLDEDQGSLDLFVSGTQDAVLM 187
            + G     ++                  +G+  L+ P  ++ +  +D+ V  T    L+
Sbjct: 143 TWLG--AAGRLADPKPLSAAVSAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDAGTLI 200

Query: 188 VELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
                 +       + D +LD    G          ++++       P   +  +  + +
Sbjct: 201 EVQGTGEGATFTRSTLDKMLDLAQAG-------CAELARIQAEALAAPYPGELPEPPQPK 253

Query: 242 EE 243
           ++
Sbjct: 254 KK 255


>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
 gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
 gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
          Length = 243

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 13/238 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR     R +    G+L   +GS+    GD + +     G R+   +   
Sbjct: 10  LLDENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKIL-AGIFGPRDV--HPKH 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +  T+       Y+  P +  E  +  APSRREI   ++ + A+ P L         + +
Sbjct: 67  MVRTETGILRCRYHMSPFSVSERKK-PAPSRREIEISKVIKEALEPSLMLEQFPRTAVDV 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG S  A +  +S+AL DAG+P+   V+  A G V D     I+ D++ +ED 
Sbjct: 126 FIEVLQADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVADT----IVLDVNNEEDQ 181

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            G  D  V    +   +T +Q+D     ++ +        A  G   +     K LS+
Sbjct: 182 AGQADMPVGYMPNLDQVTLIQLDGV---LTPDEYSRCAAMAIDGCKQVYEVQKKALSD 236



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 19/217 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD----FFPLTVNYQERTYA 69
           R +++  G +   ++G+    +G+  +LA +   R +            L   Y    ++
Sbjct: 27  RRVEITAGVL-NNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGILRCRYHMSPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R++  P+  EI IS++I  ++ P  +  +  +    V I V+Q D  S   
Sbjct: 86  VSE------RKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQADGGS--R 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDA 184
             ++ AAS AL  +G+P    V       +    VL+   +EDQ G  D+ V      D 
Sbjct: 138 CAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMPNLDQ 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           V +++L+   L+ D          + CK V E   K 
Sbjct: 198 VTLIQLDG-VLTPDEYSRCAAMAIDGCKQVYEVQKKA 233


>gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member
           (exos-4.1) [Caenorhabditis elegans]
 gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
           Full=Ribosomal RNA-processing protein 41
 gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 240

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ +   R+DGR    +R+I+ ++GL +   GS     G+T+ +  V  G  E +    
Sbjct: 2   NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV-YGPYEGKS--- 57

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S     +   +  Y+    +  E        R+     RL  +A   V+   A     L 
Sbjct: 58  SKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLD 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ + DGS+  A V  +SLAL DAG+P+    +    G+V    D   + D++  E+
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVV----DGKPIVDLTSREE 173

Query: 485 HLG--HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
                 +          +  +++  ++     + ++ A +     
Sbjct: 174 TDLLPRVTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCAD 218



 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 16/211 (7%)

Query: 25  RQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R ++G+    +G T VL  V      +S K  +D   +   Y     +  K  G   +  
Sbjct: 30  RNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQY-----SATKFSGLERKNR 84

Query: 82  SRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
           +R       ISR+++++   +       +++  +   V+Q D  +      + A S AL 
Sbjct: 85  TRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLA--ACVNATSLALA 142

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGT---QDAVLMVELEANQLS 196
            +G+P +G    A    ++G+ +++    E+   L      T   +D V++VEL+ N+L 
Sbjct: 143 DAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPRVTLATICGRDEVILVELQ-NRLH 201

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            D +   +      C  V E ++ +A+   K
Sbjct: 202 IDHLSTVMDAAKATCADVYECLAVVAQQHLK 232


>gi|114571545|ref|YP_758225.1| ribonuclease PH [Maricaulis maris MCS10]
 gi|122314919|sp|Q0AKA6|RNPH_MARMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114342007|gb|ABI67287.1| RNAse PH [Maricaulis maris MCS10]
          Length = 238

 Score =  140 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 90/239 (37%), Gaps = 16/239 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR  + +R+I  + G+     GS L   G T  +   ++    +E     + G  +
Sbjct: 1   MRPHGRARDAMREIKLEAGVSVYAEGSCLARFGGTHVLCTASI----EESVPPWMRGGGK 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   SR     G  S R     RL  R++  V+   A     + I  
Sbjct: 57  GWVTAEYGMLPRATHTRSRREATAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITIDC 116

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           ++ ++DG +  A + G+ +A       L++ G+  S PV G    +     D     D+ 
Sbjct: 117 DVLQADGGTRTAAITGAWVALKQATGYLIEEGLLTSDPVHGQLAAISCGVIDGETRLDLE 176

Query: 481 GDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            +ED     D     TD  GI  +Q   +   I E    +    AK G + +       
Sbjct: 177 YEEDRRAEADANFVLTDTGGIVEIQATAEDKPIPETDFDLLFALAKAGVVDLCEAQLAA 235



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 34/237 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +KLE G ++  ++G+ LA +G T VL T   + S+     G     +T  Y     A 
Sbjct: 12  REIKLEAG-VSVYAEGSCLARFGGTHVLCTASIEESVPPWMRGGGKGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                   RRE    + +     I R+I RS+R +       E Q+    +V+Q D    
Sbjct: 71  ----HTRSRREATAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITIDCDVLQADGG-- 124

Query: 126 PHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++  A  AL           +L+  P  G +       I+G+  L+   +ED   +
Sbjct: 125 TRTAAITGAWVALKQATGYLIEEGLLTSDPVHGQLAAISCGVIDGETRLDLEYEEDRRAE 184

Query: 172 GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
              +  ++ T   ++ ++  A    + E                + EA   LA +  
Sbjct: 185 ADANFVLTDT-GGIVEIQATAEDKPIPETDFDLLFALAKAGVVDLCEAQ--LAALKG 238


>gi|332669877|ref|YP_004452885.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
 gi|332338915|gb|AEE45498.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
          Length = 262

 Score =  140 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++     L    GS L   G T+ + V +L     E       G+   
Sbjct: 9   RADGRRPDELRPVTLTRRFLDAGEGSVLVEFGGTKVLCVASLT----EGVPRWRKGSGEG 64

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++  V+  +A    T+ +  +
Sbjct: 65  WVTAEYAMLPRATSTRSDRESVKGRVGGRTQEISRLIGRSLRAVVDVSALGENTIVLDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDAG--------VP-----ISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA         VP     +   VA +++G+V    D + 
Sbjct: 125 VLQADGGTRTAAITGAYVALADAVAWAQQRRLVPAGRQVLRDSVAAVSVGIV----DGVP 180

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISE 514
           + D+   ED     D  V  T SG    +Q   +      
Sbjct: 181 VLDLPYVEDVRAETDMNVVVTGSGTFVEVQGTAEHAPFDR 220



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL        +   + G     +T  Y     A          +  R  
Sbjct: 33  GSVLVEFGGTKVLCVASLTEGVPRWRKGSGEGWVTAEYAMLPRATSTRSDRESVK-GRVG 91

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLSG- 142
                ISR+I RS+R +       E  ++   +V+Q D        ++  A  AL  +  
Sbjct: 92  GRTQEISRLIGRSLRAVVDVSALGENTIVLDCDVLQADGG--TRTAAITGAYVALADAVA 149

Query: 143 -------LP-----FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                  +P         V    V  ++G  VL+    ED   +  +++ V+G+   V  
Sbjct: 150 WAQQRRLVPAGRQVLRDSVAAVSVGIVDGVPVLDLPYVEDVRAETDMNVVVTGSGTFV-E 208

Query: 188 VELEANQLS 196
           V+  A    
Sbjct: 209 VQGTAEHAP 217


>gi|257466146|ref|ZP_05630457.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917304|ref|ZP_07913544.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691179|gb|EFS28014.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
          Length = 249

 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 24/250 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R+I           GS L   G+T+ I   ++     E+    +  T + 
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASV----SEKVPSFIKNTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ +P ATGE ++     G  S R +   RL  RA+   +        T+ +  +
Sbjct: 59  WLTAEYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCD 118

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +A       L+  G     P+   VA +++G      +  I  
Sbjct: 119 VIQADGGTRTASITGAFVAMAIAAAKLLREGTITESPVLSSVAAVSVGKC----EGNIFL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  ED    +D  V   D G    +Q   +        +   L  A+ G   +L +  
Sbjct: 175 DLNYVEDSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQR 234

Query: 537 KVLSESRLQL 546
           +VL E    +
Sbjct: 235 EVLGEDYEII 244



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 19/162 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +           LT  Y     A G+        + +
Sbjct: 25  AEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTAEYSMIPRATGE-RNQREAAKGK 83

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL--- 138
            +   + I R+I R++R      K  +    +  +V+Q D        S+  A  A+   
Sbjct: 84  LSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQADGG--TRTASITGAFVAMAIA 141

Query: 139 --------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
                    ++  P    V    V    G   L+    ED  
Sbjct: 142 AAKLLREGTITESPVLSSVAAVSVGKCEGNIFLDLNYVEDSS 183


>gi|254295455|ref|YP_003061478.1| ribonuclease PH [Hirschia baltica ATCC 49814]
 gi|254043986|gb|ACT60781.1| ribonuclease PH [Hirschia baltica ATCC 49814]
          Length = 243

 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R  E++R++S +VG  +   GS L   G T  +   +            + GT + 
Sbjct: 6   RPSKRAPESLREVSLEVGKSRYAEGSCLVKFGHTHVLCTASWTGD----VPRWMKGTGKG 61

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT    R     G  S R     RL  RA+  V    A     + I  +
Sbjct: 62  WVTAEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITIDCD 121

Query: 429 ITESDGSSSMATVCGSSLALM-------DAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A + G  +AL        + G+    P+    A I+ G+ +D    + + 
Sbjct: 122 VIQADGGTRTAAITGGYVALALAINYLKEEGIISTNPLVSQAAAISCGVYQD----VPVL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D     +  G I  +Q   +    S    +     A  G   +     
Sbjct: 178 DLDYAEDSNAMVDANFIMSSDGRIIEVQGTGEERPFSREEFLAMSDLADAGCKELFALQK 237

Query: 537 KVLSES 542
             +  +
Sbjct: 238 AAIDNA 243



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 87/240 (36%), Gaps = 28/240 (11%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFP 58
           F+  +     + R + LE G+ +R ++G+ L  +G T VL T  +   +     G     
Sbjct: 4   FERPSKRAPESLREVSLEVGK-SRYAEGSCLVKFGHTHVLCTASWTGDVPRWMKGTGKGW 62

Query: 59  LTVNYQERTYAVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPL--FSKCYKNETQV 113
           +T  Y     A         RRE    + +     I R+I R++R +       +N+  +
Sbjct: 63  VTAEYGMLPRAT----HTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITI 118

Query: 114 IINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPV---------VGAQVDYINGQYVLN 164
             +V+Q D  +    ++    + AL ++ L  EG +                     VL+
Sbjct: 119 DCDVIQADGGTRTAAITGGYVALALAINYLKEEGIISTNPLVSQAAAISCGVYQDVPVLD 178

Query: 165 PRLDEDQGSL---DLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
               ED  ++   +  +S +   ++ V+    +   S +  L         CK +     
Sbjct: 179 LDYAEDSNAMVDANFIMS-SDGRIIEVQGTGEERPFSREEFLAMSDLADAGCKELFALQK 237


>gi|158317399|ref|YP_001509907.1| ribonuclease PH [Frankia sp. EAN1pec]
 gi|226736910|sp|A8L766|RNPH_FRASN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158112804|gb|ABW15001.1| ribonuclease PH [Frankia sp. EAN1pec]
          Length = 260

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 11/232 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +RD++ + G  +   GS+L   G T+ +   ++     E       G+  
Sbjct: 2   IRVDGRTTDQLRDVTIERGWQEHAEGSALISAGRTRVLCAASVT----EGVPRWRKGSGL 57

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT       S  G    R     RL  R++   +   A    T+ I  
Sbjct: 58  GWVTAEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDC 117

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA--MGLVKDGDDFIILSDISGDEDH 485
           ++  +DG +  A + G+ +AL DA   + +P A +     +       + + D++  ED 
Sbjct: 118 DVLLADGGTRTAAITGAYVALADACRWLGRPAAIVTSVCAVSVGVVGGVPMLDLAYTEDS 177

Query: 486 LGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
               D  V  T   G   +Q   +      + +   L  A  G   +    +
Sbjct: 178 TADTDMNVVRTGAGGFVEVQGTAEGTPFERSTLDELLDLAVAGCTRLTEIQN 229



 Score = 39.5 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 13/133 (9%)

Query: 14  RPLKLETGRIARQ--SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTY 68
           R + +E G    Q  ++G+ L + G T VL        +   + G     +T  Y     
Sbjct: 13  RDVTIERGW---QEHAEGSALISAGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPR 69

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSP 126
           A          R  R       ISR+I RS+R     K    N   +  +V+  D     
Sbjct: 70  ATHTRNDRESVR-GRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLLADGG--T 126

Query: 127 HVVSMVAASAALM 139
              ++  A  AL 
Sbjct: 127 RTAAITGAYVALA 139


>gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
          Length = 244

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 89/220 (40%), Gaps = 26/220 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +RDI+   G   +  GS+L   G+T+ +   +      E     L G    
Sbjct: 4   RADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASFT----EGVPRWLKGQGTG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R     RL  R++  V+   A    T+ +  +
Sbjct: 60  WVTAEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDCD 119

Query: 429 ITESDGSSSMATVCGSSLALMD-------AGV------PISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL +        G+       ++  VA I++G++    D   
Sbjct: 120 VLQADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGII----DGTP 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           + D+  +ED     D  V  T SG   +++     G+   
Sbjct: 176 MLDLPYEEDVRAETDMNVVVTGSG-DFVEVQGTAEGVPFK 214



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 28/205 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + +  G  A Q++G+ L  +G T VL T  +   +     GQ    +T  Y     A 
Sbjct: 14  RDITITRGWSA-QAEGSALIEFGNTRVLCTASFTEGVPRWLKGQGTGWVTAEYAMLPRAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                     + + +     ISR+I RS+R +       E  ++   +V+Q D       
Sbjct: 73  N-TRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALMLSGLPF--------------EGPVVGAQVDYINGQYVLNPRLDED---Q 171
            ++  A  AL  + + +                 V    V  I+G  +L+   +ED   +
Sbjct: 130 AAITGAYVALAEA-IAWATSQGIVKQNAKVLTDSVAAISVGIIDGTPMLDLPYEEDVRAE 188

Query: 172 GSLDLFVSGTQDAVLMVELEANQLS 196
             +++ V+G+ D V  V+  A  + 
Sbjct: 189 TDMNVVVTGSGDFV-EVQGTAEGVP 212


>gi|302865661|ref|YP_003834298.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
 gi|315502225|ref|YP_004081112.1| ribonuclease ph [Micromonospora sp. L5]
 gi|302568520|gb|ADL44722.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
 gi|315408844|gb|ADU06961.1| ribonuclease PH [Micromonospora sp. L5]
          Length = 242

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 27/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G      GS L   G T+ +   ++     E       G+   
Sbjct: 3   RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVT----EGVPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    ++ +  +
Sbjct: 59  WVTAEYAMLPRATNTRSDRESVRGKVGGRTHEISRLIGRSLRACVDLKALGENSIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGV--------------PISKPVAGIAMGLVKDGDDFI 474
           + ++DG +  A + G+ +AL DA                 + + VA +++G++       
Sbjct: 119 VLQADGGTRTAAITGAYVALHDAVTWLAERKALAGKVEKVMHRSVAAVSVGVIGGEP--- 175

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED    +D  V  T +G    +Q   + G  + + +   L     G L + +
Sbjct: 176 -MLDLCYAEDVTAEVDMNVVCTGTGDFVEVQGTGEAGVFARDQLDALLDLGVAGCLELAD 234

Query: 534 EMSKVLS 540
              K LS
Sbjct: 235 AQRKALS 241



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 26/216 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL T      +   + G     +T  Y     A          R  +  
Sbjct: 27  GSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTAEYAMLPRATNTRSDRESVR-GKVG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR+I RS+R         E  ++   +V+Q D        ++  A  AL  +  
Sbjct: 86  GRTHEISRLIGRSLRACVDLKALGENSIVLDCDVLQADGG--TRTAAITGAYVALHDAVT 143

Query: 142 ------------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV- 185
                              V    V  I G+ +L+    ED   +  +++  +GT D V 
Sbjct: 144 WLAERKALAGKVEKVMHRSVAAVSVGVIGGEPMLDLCYAEDVTAEVDMNVVCTGTGDFVE 203

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +    EA   + D +   +  G   C  + +A  K 
Sbjct: 204 VQGTGEAGVFARDQLDALLDLGVAGCLELADAQRKA 239


>gi|209544228|ref|YP_002276457.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531905|gb|ACI51842.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 248

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR  + +R IS + G      GS+L   G T+ +   T+ +R        L G  + 
Sbjct: 4   RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESR----VPPFLRGQGKG 59

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G  S R     RL  R++  V+   A    ++ +  +
Sbjct: 60  WVTAEYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCD 119

Query: 429 ITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           +  +DG +  A++ G+ +AL           + A +P++  VA ++ GL   G     + 
Sbjct: 120 VLNADGGTRCASITGAWVALRLALETLVRNRVLARLPLTAQVAAVSCGLTGAG----AVL 175

Query: 478 DISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  DED     D     T+  GI  +Q   +    +++     L+ A+ G   +     
Sbjct: 176 DLDYDEDSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQR 235

Query: 537 KVLSES 542
           + +  +
Sbjct: 236 QAVDAA 241



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E G  A  ++G+ L   G T VL     +  +     GQ    +T  Y     A 
Sbjct: 14  RAISIEPG-FAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTAEYGMLPRAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
               GG    + + +     I R+I RS+R +       E    V  +V+  D       
Sbjct: 73  -HTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNADGG--TRC 129

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLN 164
            S+  A  AL           +L+ LP    V            VL+
Sbjct: 130 ASITGAWVALRLALETLVRNRVLARLPLTAQVAAVSCGLTGAGAVLD 176


>gi|310286881|ref|YP_003938139.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
 gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
          Length = 243

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 3   IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPS----VPRWRKDSGL 58

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I  
Sbjct: 59  GWVTAEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL+D             A   +   V+ +++G++    +  
Sbjct: 119 DVLQADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVI----NGT 174

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 175 PMLDLPYIEDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQA 234

Query: 534 EMSKVLS 540
                LS
Sbjct: 235 AQRAALS 241



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 28  GSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKVG 86

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL+    
Sbjct: 87  GRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQADGG--TRTASITGAYVALVDAMR 144

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                     +    +  V    V  ING  +L+ P +++ Q    +++ ++G+ D +  
Sbjct: 145 WAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGDFI-E 203

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 204 IQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQ 236


>gi|186682825|ref|YP_001866021.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
 gi|226736921|sp|B2J9Q1|RNPH_NOSP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|186465277|gb|ACC81078.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 22/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R IS      +   GS L   GDTQ +  V++           L GT + 
Sbjct: 5   RPDGRLPYELRPISFYPSFTRFAPGSVLARCGDTQVLCTVSVNKG----VPKFLEGTGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   +   A    TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQKRQERELLKLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + GS +AL                P+   VA +++GL++         D+
Sbjct: 121 QADAGTRTTAITGSFVALAHAISKLLQEGVLERSPLCGQVAAVSVGLLEAEP----FLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V      GI  +Q   + G  S   +   L  A++G   +L    + 
Sbjct: 177 NYIEDVAATVDFNVVMDQHLGIIEVQGTAEEGSFSRTQLDQLLDVAQKGIQELLIAQREA 236

Query: 539 LSE 541
           +++
Sbjct: 237 IAD 239



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 25/220 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R + G+VLA  G+T VL TV  ++ +    +G     LT  Y+    A  K      R  
Sbjct: 25  RFAPGSVLARCGDTQVLCTVSVNKGVPKFLEGTGKGWLTAEYRMLPSATQK---RQEREL 81

Query: 82  SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL- 138
            + +     I R+I RS+R    F    +    V  +V+Q D        ++  +  AL 
Sbjct: 82  LKLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVLQADAG--TRTTAITGSFVALA 139

Query: 139 -MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD-AVL 186
             +S L         P  G V    V  +  +  L+    ++   ++D  V   Q   ++
Sbjct: 140 HAISKLLQEGVLERSPLCGQVAAVSVGLLEAEPFLDLNYIEDVAATVDFNVVMDQHLGII 199

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            V+  A +   S   +   +       + ++ A  +    
Sbjct: 200 EVQGTAEEGSFSRTQLDQLLDVAQKGIQELLIAQREAIAD 239


>gi|119493583|ref|ZP_01624247.1| ribonuclease PH [Lyngbya sp. PCC 8106]
 gi|119452573|gb|EAW33756.1| ribonuclease PH [Lyngbya sp. PCC 8106]
          Length = 241

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 99/240 (41%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R  + +R +  ++   + +  S L   G+TQ I  VT+         + L  + + 
Sbjct: 5   RLDDRKPDQLRPVHFELNYTRYSSASVLTKCGNTQVICNVTIQPG----VPNFLKDSGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   +        T+ I +++ 
Sbjct: 61  WLTAEYRMLPGATQQRHSRELMKLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A++ G  +AL +A             PIS  +A I++GL+ +G+ +    D+
Sbjct: 121 QADAGTRTASITGGFVALANAFNKLVDKGELEKSPISHQIAAISVGLL-EGEPY---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           + +ED    +D  +   D  G+  +Q   +    +   +   +  A+ G   +L   ++ 
Sbjct: 177 NYEEDVAADVDCNIVMNDQLGMIELQGTAEAESFTRQQLNKIMDYAEIGIKQLLEAQNQA 236



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 80/233 (34%), Gaps = 32/233 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+  E     R S  +VL   G T V+  V     + +         LT  Y+      
Sbjct: 15  RPVHFELN-YTRYSSASVLTKCGNTQVICNVTIQPGVPNFLKDSGQGWLTAEYRMLP--- 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIIN--VMQHDLESSPHV 128
           G     + R   + +     I R+I RS+R         E  VII+  V+Q D       
Sbjct: 71  GATQQRHSRELMKLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVLQADAG--TRT 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+     AL            L   P    +    V  + G+  L+   +ED       
Sbjct: 129 ASITGGFVALANAFNKLVDKGELEKSPISHQIAAISVGLLEGEPYLDLNYEEDVAADVDC 188

Query: 175 DLFVSGTQDAVLMVE----LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           ++ +    D + M+E     EA   +   +   + +     K ++EA ++  K
Sbjct: 189 NIVM---NDQLGMIELQGTAEAESFTRQQLNKIMDYAEIGIKQLLEAQNQALK 238


>gi|157964776|ref|YP_001499600.1| ribonuclease PH [Rickettsia massiliae MTU5]
 gi|157844552|gb|ABV85053.1| Ribonuclease PH [Rickettsia massiliae MTU5]
          Length = 250

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 12  MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNQ 67

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +     G    R     RL  RA+  V+         + I  
Sbjct: 68  GWITAEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDC 127

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A I+ G+ K       +
Sbjct: 128 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYKGE----AI 183

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 184 LDLDYLEDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKLQ 243

Query: 536 SKVLSES 542
           ++VL ES
Sbjct: 244 NQVLLES 250



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 34/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +   + ++     GQ+   +T  Y       
Sbjct: 23  RPISLELSPLI-NAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWITAEY------- 74

Query: 71  GKIPGGY---LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           G +PG     ++RE    +       I R+I R++R +       E Q+II+    + + 
Sbjct: 75  GMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDCDVINADG 134

Query: 125 SPHVVSMVAASAALMLSGL------------PFEGPVVGAQVDYINGQYVLNPRL-DEDQ 171
                ++  +  AL L+ +            P    +         G+ +L+    ++  
Sbjct: 135 GTRTAAITGSYVALHLA-IRSLMKKRVLKVNPLISQIAAISCGIYKGEAILDLDYLEDSD 193

Query: 172 GSLD--LFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +D     +G  + + +    E N  SE   L  +         + +  +++
Sbjct: 194 ADVDSNFVFAGNGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKLQNQV 246


>gi|270157357|ref|ZP_06186014.1| ribonuclease PH [Legionella longbeachae D-4968]
 gi|289164250|ref|YP_003454388.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella longbeachae NSW150]
 gi|269989382|gb|EEZ95636.1| ribonuclease PH [Legionella longbeachae D-4968]
 gi|288857423|emb|CBJ11251.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella longbeachae NSW150]
          Length = 235

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R++  +R I       +   GS L   G T+ +   ++     E     + G  +
Sbjct: 1   MRPSNREANQLRPIQLTRNYTKHAEGSVLVEFGQTKVLCNASVT----EGVPRFIKGKNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   +      G    R +   RL  R++   +        T+ +  
Sbjct: 57  GWVTAEYGMLPRATHSRTEREASKGKQGGRTMEIQRLIGRSLRACVDLKFLGENTITLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + GS +A+ D             +P    +A +++GL         +
Sbjct: 117 DVIQADGGTRTAAITGSCVAMRDAISWMVEREKIRRMPAFNYIAAVSVGLY----RGQAV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED L   D  V   ++G    +Q   +    +   +   L  A+ G   ++   
Sbjct: 173 LDLDYAEDVLAETDMNVVMNEAGHFIEIQGTAEDRHFNREELNNMLALAEIGIPQLIEIQ 232

Query: 536 SKV 538
            K 
Sbjct: 233 KKA 235



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 34/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP++L T    + ++G+VL  +G+T VL       S+ +G   F        +T  Y   
Sbjct: 12  RPIQL-TRNYTKHAEGSVLVEFGQTKVLCNA----SVTEGVPRFIKGKNQGWVTAEYGML 66

Query: 67  TYAV-GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLE 123
             A   +      +   +     + I R+I RS+R      +  E  +    +V+Q D  
Sbjct: 67  PRATHSRTEREASK--GKQGGRTMEIQRLIGRSLRACVDLKFLGENTITLDCDVIQADGG 124

Query: 124 SSPHVVSMVAASAAL--MLS---------GLPFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                 ++  +  A+   +S          +P    +    V    GQ VL+    ED  
Sbjct: 125 --TRTAAITGSCVAMRDAISWMVEREKIRRMPAFNYIAAVSVGLYRGQAVLDLDYAEDVL 182

Query: 171 -QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +  +++ ++     + +    E    + + + + +         +IE   K 
Sbjct: 183 AETDMNVVMNEAGHFIEIQGTAEDRHFNREELNNMLALAEIGIPQLIEIQKKA 235


>gi|289524415|ref|ZP_06441269.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502345|gb|EFD23509.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 122

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 266 KQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDI 325
             I  +K+K+   F   +    E  + +V      K +R+++LD+ +R DGR  + +R I
Sbjct: 1   DAIKAIKEKVWEKFKDTYPEQ-ESYVSNVITKYVKKAMRSLILDEGLRADGRAMDELRPI 59

Query: 326 SAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT-REDEQYVDSLSGTQ-RNDFMMHYNFLPC 383
           S +V LL R HGS++F RG+TQA+VV TLG   EDEQ +D L   +    FM+HYNF P 
Sbjct: 60  SCEVSLLPRAHGSAVFTRGETQAMVVTTLGMFGEDEQILDGLKLDEPPKRFMLHYNFPPF 119

Query: 384 ATG 386
           + G
Sbjct: 120 SVG 122


>gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
 gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
          Length = 245

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 21/247 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           ML   +R+DGR    +R  S ++  L    GS++   G T+ +   ++     E     L
Sbjct: 1   MLQDVIRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASI----QEGVPKFL 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            GT +      Y+ LP +T   +      G    R     RL  R++   +        T
Sbjct: 57  EGTGQGWLTAEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEIT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALM--------DAGVPISKPVAGIAMGLVKDGDDFI 474
           + +  ++ ++DG +  A++ G  +A +        D    +  PVA +++G+V    +  
Sbjct: 117 IIVDCDVLQADGGTRTASITGGYVATVLALRKIFPDTYRDLVSPVAAVSVGIV----NGT 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D++  ED     D  V     G    +Q   +    S   +   L  A +G   ++ 
Sbjct: 173 PMLDLNYAEDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELME 232

Query: 534 EMSKVLS 540
             SKVLS
Sbjct: 233 SQSKVLS 239



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 16/208 (7%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+ +   G T VL        +    +G     LT  Y     +  +          R  
Sbjct: 31  GSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLTAEYSMLPAST-QTRTPRESHTGRLQ 89

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLSGL 143
                I R+I RS+R         E  +I   +V+Q D  +    ++    +  L L  +
Sbjct: 90  GRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQADGGTRTASITGGYVATVLALRKI 149

Query: 144 PFE------GPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL-FVSGTQDAVLMVELEANQL 195
             +       PV    V  +NG  +L+    ED     DL  V       + ++  A ++
Sbjct: 150 FPDTYRDLVSPVAAVSVGIVNGTPMLDLNYAEDSTADTDLNVVKNHLGDYIEIQATAERV 209

Query: 196 --SEDVVLDAIIFGHNECKPVIEAISKL 221
             S + +   +         ++E+ SK+
Sbjct: 210 SFSREELDAMLSLADKGIAELMESQSKV 237


>gi|310778905|ref|YP_003967238.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
 gi|309748228|gb|ADO82890.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
          Length = 245

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 24/250 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           + +++R D R  + +RDI  +        GS L   G+T+ I   ++     ++    L 
Sbjct: 1   MSEQLRDDNRKLDQIRDIKIKPNFTIYAEGSVLIEMGNTKVICTASI----SDRVPPFLR 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
              R      Y+ LP AT + +      G  S R +   RL  R++   +        T+
Sbjct: 57  NQGRGWLTAEYSMLPRATEDRNMREAVKGKLSGRTMEIQRLIGRSLRACIDLEKIGEKTI 116

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A++ G  +AL  A             P+   VA I+ G+V     
Sbjct: 117 TVDCDVIQADGGTRTASITGGYMALALAVKKLLKKDKLKENPLIANVAAISAGIV----G 172

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              + D+   ED    +D  V     G    +Q   +    +   +   L  A++G + +
Sbjct: 173 GQPMLDLKYTEDSTAEVDMNVIMNSKGEFVEVQGTGEEATYTRRELNEMLDLAEKGIMEL 232

Query: 532 LNEMSKVLSE 541
           +   +K++ E
Sbjct: 233 VELQNKIVEE 242



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 23/218 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +      Q    LT  Y     A          +  +
Sbjct: 28  AEGSVLIEMGNTKVICTASISDRVPPFLRNQGRGWLTAEYSMLPRATEDRNMREAVK-GK 86

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +   + I R+I RS+R      K  +    V  +V+Q D        S+     AL L+
Sbjct: 87  LSGRTMEIQRLIGRSLRACIDLEKIGEKTITVDCDVIQADGG--TRTASITGGYMALALA 144

Query: 142 GL-----------PFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL-FVSGTQDAVLMV 188
                        P    V       + GQ +L+ +  ED    +D+  +  ++   + V
Sbjct: 145 VKKLLKKDKLKENPLIANVAAISAGIVGGQPMLDLKYTEDSTAEVDMNVIMNSKGEFVEV 204

Query: 189 ELEANQL--SEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +    +   +   + + +         ++E  +K+ + 
Sbjct: 205 QGTGEEATYTRRELNEMLDLAEKGIMELVELQNKIVEE 242


>gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 255

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 26/263 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R DGR    +R +S   G      GS L   G+T+ + V +      E      
Sbjct: 1   MTNSPLRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFT----EGVPRWK 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             +        Y+ LP AT + S      G    R     RL  R++  ++  +A    T
Sbjct: 57  RDSGEGWVTAEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-------AGV--P----ISKPVAGIAMGLVKD 469
           + +  ++  +DG +  A+V G+ +AL D        G+  P    ++  V+ +++G++  
Sbjct: 117 IVLDCDVLRADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGII-- 174

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGR 528
             D   ++D+   ED     D  V  T  G    +Q   +    S   +   L  A  G 
Sbjct: 175 --DGTAMADLPYVEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFSREELSELLDLATAGN 232

Query: 529 LHILNEMSKVLSESRLQLGEFTP 551
             +       L    ++  E TP
Sbjct: 233 AQLARAQKLALEAPLMERVEVTP 255



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 31/216 (14%)

Query: 29  GAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           G+VL  +G T VL        V       G+ +  +T  Y     A  +       +  +
Sbjct: 31  GSVLVEFGNTRVLCVASFTEGVPRWKRDSGEGW--VTAEYSMLPRATEQRSSRESVK-GK 87

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS 141
                  ISR+I RS+R +       E  ++   +V++ D        S+  A  AL  +
Sbjct: 88  VGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGG--TRTASVTGAYVALADA 145

Query: 142 GLPFEG--------------PVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDA-V 185
            + +                 V    V  I+G  + + P +++ +   D+ V  T D   
Sbjct: 146 -IAWAKERGILTPSARVLTDSVSAVSVGIIDGTAMADLPYVEDVRAQTDMNVVQTGDGRF 204

Query: 186 LMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
           + V+  A     S + + + +         +  A  
Sbjct: 205 IEVQGTAEHAPFSREELSELLDLATAGNAQLARAQK 240


>gi|271963272|ref|YP_003337468.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
 gi|270506447|gb|ACZ84725.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
          Length = 238

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 75/219 (34%), Gaps = 16/219 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G L    GS L   G T+ +   ++     +       G+ + 
Sbjct: 3   RADGRSPDQLRPVTITRGWLAHAEGSVLVEFGGTKVLCAASV----QDSVPRWRRGSGQG 58

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT       S  G    R     RL  R++   +        ++ I  +
Sbjct: 59  WVTAEYAMLPRATNTRNDRESVRGKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPIS-------KPVAGIAMGLVKDGDDFIILSDISG 481
           + ++DG +  A + G+ +AL DA   +         P+      +         L D+  
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWMRERKMCKGDPLIDSVSAVSVGVVGSTPLLDLCY 178

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVM 519
            ED     D  V  T SG    +Q   +        +  
Sbjct: 179 TEDVAAETDMNVVMTGSGAFVEVQGTAEGKPFDRGALDE 217



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 9/131 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G +A  ++G+VL  +G T VL       S+   + G     +T  Y     A 
Sbjct: 13  RPVTITRGWLAH-AEGSVLVEFGGTKVLCAASVQDSVPRWRRGSGQGWVTAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                    R  +       ISR+I RS+R         E  ++   +V+Q D       
Sbjct: 72  NTRNDRESVR-GKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCDVLQADGG--TRT 128

Query: 129 VSMVAASAALM 139
            ++  A  AL 
Sbjct: 129 AAITGAYVALA 139


>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
 gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
          Length = 241

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 9/234 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R DGR    +R +  +VG+L    GS+    G T+  V    G RE    +  +   
Sbjct: 12  DGKRHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEV-VAAVYGPREPP--MRGMVLP 68

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R      Y+  P +T E     APSRREI   ++ R A+   +         + +  E+
Sbjct: 69  DRAVIRCRYHMAPFSTDERKN-PAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEV 127

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             +DG +  A +  +SLAL DAG+P+   VAG+A+G V+      ++ DI   ED  G  
Sbjct: 128 IRADGGTRTAALTAASLALADAGIPMKGLVAGVAVGKVQ----GTLVLDIDELEDMYGEA 183

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           D  VA   S +  + +    G +       AL+ A  G   I     KVL+E  
Sbjct: 184 DMPVAAIPS-LNKIVLLQLNGVLEPREFPQALKLAWEGIKKIHAMQKKVLAEKY 236



 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RPL+++ G +   +DG+     G T V+A V   R         P    +   Y    ++
Sbjct: 25  RPLEMKVGVL-YNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIRCRYHMAPFS 83

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPH 127
             +      R+   P+  EI +S++I  ++          +    V I V++ D      
Sbjct: 84  TDE------RKNPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIRADGG--TR 135

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSG--TQDA 184
             ++ AAS AL  +G+P +G V G  V  + G  VL+   L++  G  D+ V+   + + 
Sbjct: 136 TAALTAASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDELEDMYGEADMPVAAIPSLNK 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +++++L    L       A+       K +     K+   
Sbjct: 196 IVLLQLNG-VLEPREFPQALKLAWEGIKKIHAMQKKVLAE 234


>gi|115377533|ref|ZP_01464733.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
 gi|115365473|gb|EAU64508.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
          Length = 276

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 24/231 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R    +R ++   G+ +   GS+    G T+ IV  ++    +E+    L G        
Sbjct: 45  RGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSV----EERVPPHLMGKGTGWVTA 100

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T   S      G  S R +   RL  R++   +  +   P TL +  ++ ++
Sbjct: 101 EYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQA 160

Query: 433 DGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A++ G+ +AL+            + +P   P+A +++G+VK      +  D+  
Sbjct: 161 DGGTRTASITGAYVALVMALRSLNSKGTLSRMPSLTPLAAVSVGVVKGE----VRVDLDY 216

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +ED    +D  +  T  G I  +Q   +        +   L         +
Sbjct: 217 EEDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQL 267



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+ L  G ++R ++G+    +G T V+ T   +  +           +T  Y     + 
Sbjct: 51  RPVTLTPG-VSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVTAEYGMLPRST 109

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK---CYKNETQVIINVMQHDLESSPH 127
                     + + +   + I R+I RS+R   +      +  T +  +V+Q D      
Sbjct: 110 -HTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLT-LDCDVIQADGG--TR 165

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  AL            LS +P   P+    V  + G+  ++   +ED      
Sbjct: 166 TASITGAYVALVMALRSLNSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYEEDSAADVD 225

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           L+L  +G    ++ V+  A         +   +  G    + +  A +K+
Sbjct: 226 LNLVATG-DGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKV 274


>gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424]
 gi|226736901|sp|B7KB81|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424]
          Length = 242

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 22/245 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R I  +    +   GS L   G+T+ +   T+           L  + + 
Sbjct: 5   RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQP----NVPKFLLNSGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT E         S R     RL  R++   L        T+ I +++ 
Sbjct: 61  WLTAEYRMLPGATPERQSRELMQLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVL 120

Query: 431 ESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + G  +AL                P+  PVA +++GL+ +G+ F    D+
Sbjct: 121 QADAGTRTTAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLI-EGEPF---LDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V  T +  +  +Q   + G  S   +   L  A+ G   +L      
Sbjct: 177 NYAEDTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQNA 236

Query: 539 LSESR 543
           ++ + 
Sbjct: 237 INSTY 241



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 32/229 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RP+  ET   +R   G+VLA  GET VL T     ++     F        LT  Y+   
Sbjct: 15  RPILFETN-YSRFRVGSVLAHCGETRVLCTATIQPNVP---KFLLNSGKGWLTAEYRMLP 70

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVIIN-VMQHDLESS 125
              G  P    R   + +     I R+I RS+R     +     T +I   V+Q D    
Sbjct: 71  ---GATPERQSRELMQLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQADAG-- 125

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               ++     AL L+             P + PV    V  I G+  L+    ED   +
Sbjct: 126 TRTTAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLIEGEPFLDLNYAEDTAAE 185

Query: 172 GSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              ++ ++G  D + +    E+   S   +   +       + ++ A  
Sbjct: 186 VDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQ 234


>gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1]
 gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1]
          Length = 247

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 26/236 (11%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R+DGRD + +R +           GS L   G+T+ +   T               +
Sbjct: 6   KPIRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVG----VPRWRRDS 61

Query: 370 QRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I
Sbjct: 62  GLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQI 121

Query: 426 VSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A+V G+ +AL+D             A   I   ++ +++G++    +
Sbjct: 122 DCDVLQADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVI----N 177

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
              + D+   ED     D  VA T SG    +Q   +    + + +   L  A +G
Sbjct: 178 GTPMLDLPYVEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 233



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 29  GAVLATYGETVVLATVVYD-RSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +     +  +D     +T  Y     A  +       R  +  
Sbjct: 33  GSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 91

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL--MLS 141
                ISR+I R +R +       E   Q+  +V+Q D        S+  A  AL   L 
Sbjct: 92  GRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQADGG--TRTASVTGAYVALVDALH 149

Query: 142 GLPFEG-----------PVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LMV 188
                G            +    V  ING  +L+ P +++ Q   D+ V+ T     + +
Sbjct: 150 WAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYVEDSQAMTDMNVAMTGSGTFIEI 209

Query: 189 ELEANQ 194
           +  A  
Sbjct: 210 QGTAEH 215


>gi|157803502|ref|YP_001492051.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
 gi|166228312|sp|A8EY33|RNPH_RICCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157784765|gb|ABV73266.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
          Length = 239

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G T  I   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +     G    R     RL  RA+  V+         + I  
Sbjct: 57  GWVTAEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A I+ G+ K       +
Sbjct: 117 DVINADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQIAAISCGIYKGE----TI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 86/229 (37%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G+T V+ +   + ++     GQ+   +T  Y     + 
Sbjct: 12  RPISLELSPLV-NAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVTAEYGMLPSST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
            +     ++RE    +       I R+I R++R +       E Q+II+    + +    
Sbjct: 71  SQR----IKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVINADGGTR 126

Query: 128 VVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  +  AL L+        +    P    +         G+ +L+    ED   +  
Sbjct: 127 TAAITGSYIALHLAIRLLMKKSILKVNPLISQIAAISCGIYKGETILDLDYLEDSDAEVD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++   +G  + + +    E    SE+  L  +         + +  +++
Sbjct: 187 INFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQNQV 235


>gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp. MCS]
 gi|119869948|ref|YP_939900.1| ribonuclease PH [Mycobacterium sp. KMS]
 gi|126436406|ref|YP_001072097.1| ribonuclease PH [Mycobacterium sp. JLS]
 gi|123368907|sp|Q1B585|RNPH_MYCSS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228293|sp|A3Q379|RNPH_MYCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228294|sp|A1UJV2|RNPH_MYCSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|108771227|gb|ABG09949.1| RNAse PH [Mycobacterium sp. MCS]
 gi|119696037|gb|ABL93110.1| RNAse PH [Mycobacterium sp. KMS]
 gi|126236206|gb|ABN99606.1| RNAse PH [Mycobacterium sp. JLS]
          Length = 260

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 17/247 (6%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R +    G      GS L   G+T+ +   ++     E       GT 
Sbjct: 2   SRREDGRLDDELRPVRITRGFTSHPAGSVLVEFGETRVMCTASVT----EGVPRWRKGTG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +      Y  LP AT + S      G    R     RL  R++   +   A    T+ I 
Sbjct: 58  QGWLTAEYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLNALGENTIAID 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPIS--------KPVAGIAMGLVKDGDDFIILSD 478
            ++ ++DG +  A + G+ +AL DA   ++        +P++     +     D  +  D
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVTYLAAAEKLSDPRPLSCAIAAVSVGVVDGRVRVD 177

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +   ED    +D  V  TD+G +  +Q   +      + +   L  A      +     +
Sbjct: 178 LPYSEDSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDLALASCDQLFVVQRE 237

Query: 538 VLSESRL 544
            L     
Sbjct: 238 ALDAPYP 244



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+++  G  +  + G+VL  +GET V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPVRITRGFTSHPA-GSVLVEFGETRVMCTASVTEGVPRWRKGTGQGWLTAEYAMLPAAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                    +  R       ISR+I RS+R          N   +  +V+Q D       
Sbjct: 73  HDRSDRESVK-GRVGGRTQEISRLIGRSLRACIDLNALGENTIAIDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAYVALADAVTYLAAAEKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ 194
           + V  T    L+      +
Sbjct: 190 MNVVATDTGTLVEIQGTGE 208


>gi|149173903|ref|ZP_01852532.1| ribonuclease PH [Planctomyces maris DSM 8797]
 gi|148847433|gb|EDL61767.1| ribonuclease PH [Planctomyces maris DSM 8797]
          Length = 246

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 88/245 (35%), Gaps = 22/245 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370
           +R D R  E +R I  + G  + T GS L   GDT  +   +L    D          + 
Sbjct: 1   MRHDSRQPEQLRPIKVERGYTKATPGSILISAGDTVVLCTASL----DNSVPPWKKNDEN 56

Query: 371 -RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                   YN LP +T    +  A   R     RL  R++  V+   A  P T+ +  ++
Sbjct: 57  PSGWVTAEYNMLPGSTSPRKQRRA-DGRSSEIQRLIGRSLRAVIDFGALGPRTITVDCDV 115

Query: 430 TESDGSSSMATVCGSSLALMDA--GVPISKPVAGIAM------------GLVKDGDDFII 475
            ++DG +   ++ G  LAL+D    +P +  +A   +             +     +   
Sbjct: 116 LQADGGTRTLSITGGFLALLDTVLAIPETCELAPGEVFDPKRIFSDSVAAVSVGVVNGEP 175

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED    +D  V  T  G    +Q   +    +  ++   L+ A  G   +   
Sbjct: 176 VLDLDYVEDSTAGVDMNVVMTGGGDFIEVQGTAEGQTFNRGMLDAQLELATAGIQQLSEI 235

Query: 535 MSKVL 539
                
Sbjct: 236 QRGCF 240



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 40/235 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD--GQDFFP---LTVNYQERTY 68
           RP+K+E G   + + G++L + G+TVVL T   D S+      D  P   +T  Y     
Sbjct: 12  RPIKVERG-YTKATPGSILISAGDTVVLCTASLDNSVPPWKKNDENPSGWVTAEYNMLPG 70

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSP 126
           +         R++ R       I R+I RS+R +            V  +V+Q D     
Sbjct: 71  STSP------RKQRRADGRSSEIQRLIGRSLRAVIDFGALGPRTITVDCDVLQADGG--T 122

Query: 127 HVVSMVAASAAL--MLSGLPFEGPVVGAQV----------------DYINGQYVLNPRLD 168
             +S+     AL   +  +P    +   +V                  +NG+ VL+    
Sbjct: 123 RTLSITGGFLALLDTVLAIPETCELAPGEVFDPKRIFSDSVAAVSVGVVNGEPVLDLDYV 182

Query: 169 EDQG---SLDLFVSGTQDAVLMVELEANQLSEDV-VLDA-IIFGHNECKPVIEAI 218
           ED      +++ ++G  D +  V+  A   + +  +LDA +       + + E  
Sbjct: 183 EDSTAGVDMNVVMTGGGDFI-EVQGTAEGQTFNRGMLDAQLELATAGIQQLSEIQ 236


>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
          Length = 243

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 11/247 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            V+  + +R DGR    +R+   ++G+ +  HGSS    G+T+ +  V  G  E   Y+ 
Sbjct: 6   EVISAEGLRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVN-GPSEP--YIK 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
             S  ++    +  NF P +  +  +     +R        +R     +         + 
Sbjct: 63  GKSKQEKAFINVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQIS 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS-GDE 483
           I   + E DG +    +  ++LAL+DAG+ +   V     G+     +  +L D++  +E
Sbjct: 123 ISLNVLEDDGGAIATCINAATLALIDAGIAMVDYVCCATAGIY----ETQVLLDLNTNEE 178

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
             +  M   V GT   +T ++ + K   +S ++   AL  A  G  HI  +M KV+ +S 
Sbjct: 179 SDISWMTVGVLGTKGKVTYLKQETK---LSLDLFEPALTTAIAGCDHIALQMQKVVRQSA 235

Query: 544 LQLGEFT 550
             L    
Sbjct: 236 KTLLSKM 242



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 14/212 (6%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTY-----AVGKIPGGY 77
           + + + G+    +G T VL  V                   QE+ +              
Sbjct: 32  VEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSK------QEKAFINVELNFAPFSLID 85

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
            ++  R  +        I R+           ++Q+ I++   + +       + AA+ A
Sbjct: 86  RKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVLEDDGGAIATCINAATLA 145

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVLMVELEANQL 195
           L+ +G+     V  A       Q +L+   +E+     + V   GT+  V  ++ E  +L
Sbjct: 146 LIDAGIAMVDYVCCATAGIYETQVLLDLNTNEESDISWMTVGVLGTKGKVTYLKQE-TKL 204

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           S D+   A+      C  +   + K+ +  AK
Sbjct: 205 SLDLFEPALTTAIAGCDHIALQMQKVVRQSAK 236


>gi|157828824|ref|YP_001495066.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933550|ref|YP_001650339.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
 gi|166228313|sp|A8GT33|RNPH_RICRS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043770|sp|B0BUM3|RNPH_RICRO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157801305|gb|ABV76558.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908637|gb|ABY72933.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
          Length = 239

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAP----SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +  A       R     RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A I+ G+ K      ++
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYKGE----VI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 34/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +   + ++     GQ+   +T  Y       
Sbjct: 12  RPISLELSPLI-NAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWITAEY------- 63

Query: 71  GKIPGGY---LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           G +PG     ++RE    +       I R+I R++R +       E Q+II+    + + 
Sbjct: 64  GMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVINADG 123

Query: 125 SPHVVSMVAASAALMLSGL------------PFEGPVVGAQVDYINGQYVLNPRL-DEDQ 171
                ++  +  AL L+ +            P    +         G+ +L+    ++  
Sbjct: 124 GTRTAAITGSYVALHLA-IRSLMKKRVLKVNPLISQIAAISCGIYKGEVILDLDYLEDSD 182

Query: 172 GSLD--LFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +D     +G  + + +    E N  SE+  L  +         + +  +++
Sbjct: 183 ADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQV 235


>gi|34581401|ref|ZP_00142881.1| ribonuclease PH [Rickettsia sibirica 246]
 gi|28262786|gb|EAA26290.1| ribonuclease PH [Rickettsia sibirica 246]
          Length = 239

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +     G    R     RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A I+ G+ K       +
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 34/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +   + ++     GQ+   +T  Y       
Sbjct: 12  RPISLELSPLI-NAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWITAEY------- 63

Query: 71  GKIPGGY---LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           G +PG     ++RE    +       I R+I R++R +       E Q+II+    + + 
Sbjct: 64  GMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVINADG 123

Query: 125 SPHVVSMVAASAALMLSGL------------PFEGPVVGAQVDYINGQYVLNPRL-DEDQ 171
                ++  +  AL L+ +            P    +         G+ +L+    ++  
Sbjct: 124 GTRTAAITGSYVALHLA-IRSLMKKRVLKVNPLISQIAAISCGIYKGEAILDLDYLEDSD 182

Query: 172 GSLD--LFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +D     +G  + + +    E N  SE+  L  +         + +  +++
Sbjct: 183 ADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQV 235


>gi|224282438|ref|ZP_03645760.1| ribonuclease PH [Bifidobacterium bifidum NCIMB 41171]
 gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010]
 gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
 gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010]
 gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
          Length = 254

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 14  IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPS----VPRWRKDSGL 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I  
Sbjct: 70  GWVTAEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL+D             A   +   V+ +++G++    +  
Sbjct: 130 DVLQADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVI----NGT 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G   +  
Sbjct: 186 PMLDLPYIEDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQA 245

Query: 534 EMSKVLS 540
                LS
Sbjct: 246 AQRAALS 252



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A  +       R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVR-GKVG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL+    
Sbjct: 98  GRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQADGG--TRTASITGAYVALVDAMR 155

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                     +    +  V    V  ING  +L+ P +++ Q    +++ ++G+ D +  
Sbjct: 156 WAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGDFI-E 214

Query: 188 VELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
           ++  A         +   +       K +  A 
Sbjct: 215 IQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQ 247


>gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulcerans Agy99]
 gi|166228296|sp|A0PUG0|RNPH_MYCUA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118571228|gb|ABL05979.1| ribonuclease RphA [Mycobacterium ulcerans Agy99]
          Length = 259

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 17/254 (6%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  + +R +    G  +   GS L   G T+ +   ++     E       G+ 
Sbjct: 2   SKREDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVT----EGVSRWRKGSG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT   S      G    R     RL  R++   +   A    T+ + 
Sbjct: 58  LGWLTAEYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVD 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPIS--------KPVAGIAMGLVKDGDDFIILSD 478
            ++ ++DG +  A + G+ +AL DA   ++        +P++     +     D  +  D
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVNYLAAAGKLSDPRPLSCAIAAVSVGVVDGRVRVD 177

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  TD+G +  +Q   +      + +   L  A      +      
Sbjct: 178 LPYEEDSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCD 237

Query: 538 VLSESRLQLGEFTP 551
            L+     +    P
Sbjct: 238 ALALPYPGVLPEGP 251



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 25/232 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G       G+VL  +G T V+ T      +   + G     LT  Y     A 
Sbjct: 14  RPVVITRG-FTENPAGSVLIEFGRTKVMCTASVTEGVSRWRKGSGLGWLTAEYAMLPSAT 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
                     + R       ISR++ RS+R          N   V  +V+Q D       
Sbjct: 73  -HTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----------LSG-LPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLD 175
            ++  A  AL            LS   P    +    V  ++G+  ++ P  ++ +  +D
Sbjct: 130 AAITGAYVALADAVNYLAAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEEDSRAEVD 189

Query: 176 LFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           + V  T    L+      +        +   +      C  +  A      +
Sbjct: 190 MNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCDALAL 241


>gi|15892898|ref|NP_360612.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|229586977|ref|YP_002845478.1| ribonuclease PH [Rickettsia africae ESF-5]
 gi|238651083|ref|YP_002916941.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
 gi|21759407|sp|Q92GZ7|RNPH_RICCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494127|sp|C3PP75|RNPH_RICAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494128|sp|C4K2U2|RNPH_RICPU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15620088|gb|AAL03513.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|228022027|gb|ACP53735.1| Ribonuclease PH [Rickettsia africae ESF-5]
 gi|238625181|gb|ACR47887.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
          Length = 239

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +     G    R     RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A I+ G+ K       +
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRVLKVNPLISQIAAISCGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 34/233 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +   + ++     GQ+   +T  Y       
Sbjct: 12  RPISLELSPLI-NAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWITAEY------- 63

Query: 71  GKIPGGY---LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           G +PG     ++RE    +       I R+I R++R +       E Q+II+    + + 
Sbjct: 64  GMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVINADG 123

Query: 125 SPHVVSMVAASAALMLSGL------------PFEGPVVGAQVDYINGQYVLNPRL-DEDQ 171
                ++  +  AL L+ +            P    +         G+ +L+    ++  
Sbjct: 124 GTRTAAITGSYVALHLA-IRSLMKKRVLKVNPLISQIAAISCGIYKGEAILDLDYLEDSD 182

Query: 172 GSLD--LFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
             +D     +G  + + +    E N  SE+  L  +         + +  +++
Sbjct: 183 ADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQV 235


>gi|73748973|ref|YP_308212.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
 gi|147669740|ref|YP_001214558.1| ribonuclease PH [Dehalococcoides sp. BAV1]
 gi|289432969|ref|YP_003462842.1| ribonuclease PH [Dehalococcoides sp. GT]
 gi|123619918|sp|Q3ZYH8|RNPH_DEHSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043760|sp|A5FQ49|RNPH_DEHSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|73660689|emb|CAI83296.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
 gi|146270688|gb|ABQ17680.1| RNAse PH [Dehalococcoides sp. BAV1]
 gi|288946689|gb|ADC74386.1| ribonuclease PH [Dehalococcoides sp. GT]
          Length = 241

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+   +R I+   G      GS L  +G T+ I  V+     +++    L  +   
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVS----MEDRVPQFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T   ++     G  S R     RL  R++   +   A    +  +  +
Sbjct: 59  WVTAEYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A++ GS +AL       +D G+    P +  VA +++ + K      I+ 
Sbjct: 119 VIQADAGTRTASITGSYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGN----IVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D   DED    +DF +   D G    +Q   +    S + +   L+  + G   + +   
Sbjct: 175 DPCYDEDFQAEVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQK 234

Query: 537 KVL 539
            + 
Sbjct: 235 GIT 237



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 32/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+ +  G     ++G+VL   G+T V+ +V    S++D    F        +T  Y   
Sbjct: 13  RPITITPG-FQSFAEGSVLIEQGKTRVICSV----SMEDRVPQFLRNSGTGWVTAEYSML 67

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLES 124
             +             + +     I R+I RS+R         E    V  +V+Q D   
Sbjct: 68  PRST-VTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCDVIQADAG- 125

Query: 125 SPHVVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                S+  +  AL L           S +PF   V    V    G  VL+P  DED   
Sbjct: 126 -TRTASITGSYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDEDFQA 184

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           +   +L ++   + V +    E    S D +   +  G    + + +   
Sbjct: 185 EVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQK 234


>gi|260889914|ref|ZP_05901177.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
 gi|260860520|gb|EEX75020.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
          Length = 239

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 24/229 (10%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + VR + R ++ +R++      +    GS L   G+T+ I   T+    +E+    L GT
Sbjct: 7   ENVRKNNRKNDEMREVKVTKNYIIHPEGSVLMEFGNTKVICNATV----EEKIPRWLKGT 62

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT    +     G  S R +   RL  RA+   +        T+ I
Sbjct: 63  GSGWVTAEYSMLPRATNARVQRESTKGKLSGRTMEIQRLIGRALRAAIDLEKLGERTIMI 122

Query: 426 VSEITESDGSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFI 474
             ++ ++DG +  A++ G+ LA       L+D G    +PI   VA I++G V++     
Sbjct: 123 DCDVIQADGGTRTASITGAYLALELAIEKLIDEGKLKDIPIKSKVAAISVGKVRNELLLD 182

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQ 522
           +      +ED    +D  +   D G    +Q   +    +   ++  ++
Sbjct: 183 LEY----EEDSRADVDMNIVMNDKGEFIELQGTGEEATFTHAELLKFIE 227



 Score = 44.5 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 19/145 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+     +  +     G     +T  Y     A          +  + +
Sbjct: 34  GSVLMEFGNTKVICNATVEEKIPRWLKGTGSGWVTAEYSMLPRATNARVQRESTK-GKLS 92

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R      K  +    +  +V+Q D        S+  A  AL L+  
Sbjct: 93  GRTMEIQRLIGRALRAAIDLEKLGERTIMIDCDVIQADGG--TRTASITGAYLALELAIE 150

Query: 142 ---------GLPFEGPVVGAQVDYI 157
                     +P +  V    V  +
Sbjct: 151 KLIDEGKLKDIPIKSKVAAISVGKV 175


>gi|296137098|ref|YP_003644340.1| ribonuclease PH [Thiomonas intermedia K12]
 gi|294341380|emb|CAZ89797.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Thiomonas
           sp. 3As]
 gi|295797220|gb|ADG32010.1| ribonuclease PH [Thiomonas intermedia K12]
          Length = 243

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 24/248 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +     +GR    +R I+ +    +   GS L   G T+ +   ++    +E+     
Sbjct: 1   MQNTPPAREGRGLSALRAIAIERHFTRHAEGSVLVAFGHTRVLCTASV----EERVPPHK 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G+ +      Y  LP AT        + G    R     RL  R++  V   +A     
Sbjct: 57  RGSGQGWVTAEYGMLPRATHTRGEREAKRGKQQGRTEEIQRLIGRSLRAVFDFSALGERQ 116

Query: 423 LRIVSEITESDGSSSMATVCG-------SSLALMDAG----VPISKPVAGIAMGLVKDGD 471
           + +  ++ ++DG +  A + G       +   LM  G     P+ + VA +++GL+  GD
Sbjct: 117 ITLDCDVLQADGGTRTAAITGAAVAAWDACQWLMAQGRIPQNPMRQLVAAVSVGLL--GD 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D+    D+   ED     D  V GT  G +  +Q   +    S   +   +  A+RG   
Sbjct: 175 DYR--LDLDYAEDSQCDTDMNVVGTADGALIEVQGTAEGAPFSRQQLDGMIDLAQRGIAE 232

Query: 531 ILNEMSKV 538
           ++    + 
Sbjct: 233 LVALQRQA 240



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 19/217 (8%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R ++G+VL  +G T VL T   +  +     G     +T  Y     A     G    + 
Sbjct: 27  RHAEGSVLVAFGHTRVLCTASVEERVPPHKRGSGQGWVTAEYGMLPRAT-HTRGEREAKR 85

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMV------A 133
            +       I R+I RS+R +F      E Q+    +V+Q D  +    ++        A
Sbjct: 86  GKQQGRTEEIQRLIGRSLRAVFDFSALGERQITLDCDVLQADGGTRTAAITGAAVAAWDA 145

Query: 134 ASAALMLSGL---PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD-AVLMV 188
               +    +   P    V    V  +   Y L+    ED Q   D+ V GT D A++ V
Sbjct: 146 CQWLMAQGRIPQNPMRQLVAAVSVGLLGDDYRLDLDYAEDSQCDTDMNVVGTADGALIEV 205

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +  A     S   +   I         ++    +  +
Sbjct: 206 QGTAEGAPFSRQQLDGMIDLAQRGIAELVALQRQALE 242


>gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
          Length = 253

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 26/236 (11%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R+DGRD + +R +           GS L   G+T+ +   T               +
Sbjct: 12  KPIRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVG----VPRWRRDS 67

Query: 370 QRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I
Sbjct: 68  GLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQI 127

Query: 426 VSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A+V G+ +AL+D             A   I   ++ +++G++    +
Sbjct: 128 DCDVLQADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVI----N 183

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
              + D+   ED     D  VA T SG    +Q   +    + + +   L  A +G
Sbjct: 184 GTPMLDLPYVEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 239



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 29  GAVLATYGETVVLATVVYD-RSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +     +  +D     +T  Y     A  +       R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL--MLS 141
                ISR+I R +R +       E   Q+  +V+Q D        S+  A  AL   L 
Sbjct: 98  GRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQADGG--TRTASVTGAYVALVDALH 155

Query: 142 GLPFEG-----------PVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-LMV 188
                G            +    V  ING  +L+ P +++ Q   D+ V+ T     + +
Sbjct: 156 WAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYVEDSQAMTDMNVAMTGSGTFIEI 215

Query: 189 ELEANQ 194
           +  A  
Sbjct: 216 QGTAEH 221


>gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
 gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
          Length = 252

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 24/236 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R+++  +  +    G+ L   G+T+ +   +L     E        T  
Sbjct: 1   MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASL----SEGVPRWRKDTGL 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT   S      G    R     RL  R++   +  TA    T+ I  
Sbjct: 57  GWVTAEYSMLPRATATRSTRESVKGKLGGRTQEISRLIGRSLRAGVDYTALGENTIEIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +AL  A           G P+   V  I++G++    D    
Sbjct: 117 DVLQADGGTRTAAITGAWIALHRAIEEGKTSGFIPGEPLKDSVCAISVGII----DGEAR 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            D+  +ED     D  V  T +G +  +Q   +    S   +   L  A+ G   +
Sbjct: 173 LDLPYEEDVRAETDMNVVMTGTGKLIEVQGTAEGEPFSREDLSKLLDLAQGGCADL 228



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 29  GAVLATYGETVVLATVVYDRS-LKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           GAVL   G T VL          +  +D     +T  Y     A           + +  
Sbjct: 26  GAVLIEAGNTRVLCCASLSEGVPRWRKDTGLGWVTAEYSMLPRATA-TRSTRESVKGKLG 84

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I RS+R          N  ++  +V+Q D        ++  A  AL     
Sbjct: 85  GRTQEISRLIGRSLRAGVDYTALGENTIEIDCDVLQADGG--TRTAAITGAWIALHRAIE 142

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-LMV 188
                  + G P +  V    V  I+G+  L+   +ED   +  +++ ++GT   + +  
Sbjct: 143 EGKTSGFIPGEPLKDSVCAISVGIIDGEARLDLPYEEDVRAETDMNVVMTGTGKLIEVQG 202

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
             E    S + +   +      C  +  A 
Sbjct: 203 TAEGEPFSREDLSKLLDLAQGGCADLTRAQ 232


>gi|239948344|ref|ZP_04700097.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922620|gb|EER22644.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 239

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +     G    R     RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A I+ G+ K       +
Sbjct: 117 DVINADGGTRTAAITGSYVALHLVIRSLMKKRVLKVNPLISQIAAISCGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDAEVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 87/232 (37%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +   + ++     GQ+   +T  Y       
Sbjct: 12  RPISLELSPLV-NAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWITAEY------- 63

Query: 71  GKIPGGY---LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           G +PG     ++RE    +       I R+I R++R +       E Q+II+    + + 
Sbjct: 64  GMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVINADG 123

Query: 125 SPHVVSMVAASAALML---SGL--------PFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                ++  +  AL L   S +        P    +         G+ +L+    ED   
Sbjct: 124 GTRTAAITGSYVALHLVIRSLMKKRVLKVNPLISQIAAISCGIYKGEAILDLDYLEDSDA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +   +   +G  + + +    E N  SE+  L  +         + +  +++
Sbjct: 184 EVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQNQV 235


>gi|325110867|ref|YP_004271935.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
 gi|324971135|gb|ADY61913.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
          Length = 245

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ- 370
           +R DGR +E +R I  Q        GS     G T  +   ++    D          + 
Sbjct: 1   MRNDGRQAEQLRPIRVQRHFTGSAPGSVYIKAGRTTLLCTASV----DLDVPPWKKHEEN 56

Query: 371 -RNDFMMHYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                   YN LP +T    R        R     RL  R++  V+   A  P T+ I  
Sbjct: 57  PSGWVTAEYNMLPGSTSPRKRRERTKVDGRSSEIQRLIGRSLRAVVDFAALGPRTITIDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV------PISKP-------VAGIAMGLVKDGDDFI 474
           ++ E+DG +    + G  +AL+DA +      P   P       VA I++G+V+      
Sbjct: 117 DVLEADGGTRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQTP--- 173

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED    +D  V  T SG    +Q   +    S   +   L  A++  + +  
Sbjct: 174 -MLDLDYSEDSTAEVDLNVVMTGSGEFVEIQGTAEQKSFSRTQLDQQLGLAEKAIVELTR 232

Query: 534 EMSKVLSESRL 544
                  +   
Sbjct: 233 IQRDAFGDQWP 243



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 14  RPLKLE---TGRIARQSDGAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQE 65
           RP++++   TG     + G+V    G T +L T      V      +      +T  Y  
Sbjct: 12  RPIRVQRHFTGS----APGSVYIKAGRTTLLCTASVDLDVPPWKKHEENPSGWVTAEYNM 67

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF---SKCYKNETQVIINVMQHDL 122
                G       R  ++       I R+I RS+R +    +   +    +  +V++ D 
Sbjct: 68  LP---GSTSPRKRRERTKVDGRSSEIQRLIGRSLRAVVDFAALGPRT-ITIDCDVLEADG 123

Query: 123 ESSPHVVSMVAASAALMLSGL------PFEGP-------VVGAQVDYINGQYVLNPRLDE 169
                 + +     AL+ + +      P   P       V    V  +    +L+    E
Sbjct: 124 G--TRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQTPMLDLDYSE 181

Query: 170 D---QGSLDLFVSGTQDAVLMVELEANQLS 196
           D   +  L++ ++G+ + V  ++  A Q S
Sbjct: 182 DSTAEVDLNVVMTGSGEFV-EIQGTAEQKS 210


>gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia sp. P1]
          Length = 245

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 25/239 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++   G  +   GS L   GDT+ +   ++     E       G+        Y  LP +
Sbjct: 1   MTITRGFQKHPAGSVLVEFGDTKVLCAASVT----EGVPRWRKGSGLGWVTAEYAMLPSS 56

Query: 385 TGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           T   S      G    R     RL  R++   +   A    T+ I  ++ ++DG +  A 
Sbjct: 57  TDTRSSRESVKGKIGGRTHEISRLIGRSLRACIDLRALGENTIAIDCDVLQADGGTRTAA 116

Query: 441 VCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + G+ +AL DA              PIS  VA +++G+V    D  +  D+  +ED    
Sbjct: 117 ITGAYVALCDAVTWLGEHGKLTDPKPISCQVAAVSVGVV----DGRVRLDLPYEEDSRAE 172

Query: 489 MDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V  T++G +  +Q   +    +   +   L  A  G   I     + L     +L
Sbjct: 173 VDTNVVATETGTLIEVQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEALDAPHPKL 231



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 32/218 (14%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G+T VL        +   + G     +T  Y     +           + +  
Sbjct: 13  GSVLVEFGDTKVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPSST-DTRSSRESVKGKIG 71

Query: 86  ENEILISRMIDRSIRPLFSKCYK----NETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                ISR+I RS+R       +    N   +  +V+Q D        ++  A  AL  +
Sbjct: 72  GRTHEISRLIGRSLRACI--DLRALGENTIAIDCDVLQADGG--TRTAAITGAYVALCDA 127

Query: 142 ------------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMV 188
                         P    V    V  ++G+  L+ P  ++ +  +D  V  T+   L+ 
Sbjct: 128 VTWLGEHGKLTDPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVDTNVVATETGTLIE 187

Query: 189 ELEANQ------LSEDVVLDAIIFGHNECKP-VIEAIS 219
                +       + D +LD+ + G        IEA+ 
Sbjct: 188 VQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEALD 225


>gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
 gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
           ARMAN-4_'5-way FS']
          Length = 235

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 104/233 (44%), Gaps = 16/233 (6%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R D R  + +R + A+ G++    GS+ F  G+T+AI  V  G   +E     +    
Sbjct: 3   EERFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAV-YGP--EEVKPRHIEKVN 59

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           +   +  Y+ LP +  + +R G   RR+I   ++   A++  +         + +   IT
Sbjct: 60  KGIIVCKYDMLPFSVPDRARPGM-DRRDIEISQVITNALNRAVILEEMPRAMVNVRIYIT 118

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL---- 486
           ++D  +  A++  +S+A  DAG+P+   VA +A G + D     I  D++ +E+      
Sbjct: 119 QADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDS----ICLDLTKEEEDFHEGG 174

Query: 487 -GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              +   +  + + I  +Q+D K   ++   +   ++  K+G + I       
Sbjct: 175 ATDVPIALLPSKNEIVLLQLDGK---VTREELKKVIEMGKKGAMEIYELEKAA 224



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP++ ETG I   + G+     G T  +A V     +K       +   +   Y    ++
Sbjct: 15  RPMEAETGII-PNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIVCKYDMLPFS 73

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V        R        +I IS++I  ++    +  +  +    V I + Q D      
Sbjct: 74  V------PDRARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQADAG--TR 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED------QGSLDLFVSGT 181
             S+ AAS A   +GLP    V       I     L+   +E+         + + +  +
Sbjct: 126 CASLTAASMACADAGLPMRDLVAAVAAGKIGDSICLDLTKEEEDFHEGGATDVPIALLPS 185

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
           ++ +++++L+   ++ + +   I  G          I +L K   K   + +SK
Sbjct: 186 KNEIVLLQLDGK-VTREELKKVIEMGKKGAME----IYELEKAALKRRFLNESK 234


>gi|225351161|ref|ZP_03742184.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158617|gb|EEG71859.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 253

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 26/244 (10%)

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
            ++ ++ +  +R DGR  + +R +           GS L   G+T+ +   T        
Sbjct: 3   AIKDLLGETMIRTDGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFT----AG 58

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTA 417
                  +        Y  LP AT +     S  G    R     RL  R +  V+   A
Sbjct: 59  VPRWRKDSGLGWVTAEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKA 118

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAM 464
                ++I  ++ ++DG +  A++ G+ +AL+D             A   I   V+ +++
Sbjct: 119 LGENQVQIDCDVLQADGGTRTASITGAYVALVDAMRWAEKHKHIRSAERVIKDSVSAVSV 178

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQ 523
           G++    D   + D+   ED     D  VA T SG    +Q   +    +   +   L  
Sbjct: 179 GVI----DGTPMLDLPYIEDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNALLDL 234

Query: 524 AKRG 527
           A++G
Sbjct: 235 AEKG 238



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 25/187 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +   +   +       +T  Y     A          R  +  
Sbjct: 38  GSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVTAEYAMLPRATADRTDRESVR-GKIG 96

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL+    
Sbjct: 97  GRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQADGG--TRTASITGAYVALVDAMR 154

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                     +    +  V    V  I+G  +L+ P +++ +    +++ ++G+ + +  
Sbjct: 155 WAEKHKHIRSAERVIKDSVSAVSVGVIDGTPMLDLPYIEDSKAMTDMNVAMTGSGEFI-E 213

Query: 188 VELEANQ 194
           ++  A  
Sbjct: 214 IQGTAEH 220


>gi|229818320|ref|ZP_04448601.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
           20098]
 gi|229784190|gb|EEP20304.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
           20098]
          Length = 254

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +           GS L   G+T+ +   T               +   
Sbjct: 15  RADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFT----AGVPRWRKDSGLG 70

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT E     S  G    R     RL  R +  V+   A     ++I  +
Sbjct: 71  WVTAEYAMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENMIQIDCD 130

Query: 429 ITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFII 475
           + ++DG +  A+V G+ +AL+D             A   ++  V+ +++G++        
Sbjct: 131 VLQADGGTRTASVTGAYVALVDALDWAEKHHHIRSAKKVLTDCVSAVSVGVISGTP---- 186

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED     D  VA T SG    +Q   +    + + +   L  A++G   +   
Sbjct: 187 MLDLPYVEDSAAMTDMNVAMTGSGAFIELQGTAEHRPFTRDELGTLLDLAEKGNKELQAA 246

Query: 535 MSKVLSE 541
             + L++
Sbjct: 247 QREALAK 253



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 25/218 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +   +   +       +T  Y     A  +       R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVTAEYAMLPRATAERTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +       E   Q+  +V+Q D        S+  A  AL+    
Sbjct: 98  GRTHEISRLIGRCLRGVVDMKALGENMIQIDCDVLQADGG--TRTASVTGAYVALVDALD 155

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGT-QDAVLMV 188
                     +       V    V  I+G  +L+    ED  ++ D+ V+ T   A + +
Sbjct: 156 WAEKHHHIRSAKKVLTDCVSAVSVGVISGTPMLDLPYVEDSAAMTDMNVAMTGSGAFIEL 215

Query: 189 ELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +  A     + D +   +       K +  A  +    
Sbjct: 216 QGTAEHRPFTRDELGTLLDLAEKGNKELQAAQREALAK 253


>gi|320096011|ref|ZP_08027624.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977082|gb|EFW08812.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 255

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 95/257 (36%), Gaps = 26/257 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +S   G      GS L   G T+ + V +  T            +   
Sbjct: 7   RADGRAPDQLRPVSITRGWSGTGEGSVLIEFGATRVLCVASFTTG----VPRWKRDSGEG 62

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT + S      G    R     RL  R++  V+   A    T+ +  +
Sbjct: 63  WVTAEYAMLPRATDQRSPRESVKGRVGGRTQEISRLIGRSLRGVVDTRALGENTVTLDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDAGV---------P----ISKPVAGIAMGLVKDGDDFII 475
           +  +DG +  A+V G+ +AL DA           P    ++  V+ I++G+V    D   
Sbjct: 123 VLRADGGTRTASVTGAYIALADAVAWAKRNGAVSPGAKVLTDSVSAISVGIV----DGAP 178

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED   H D  V  T  G    +Q   +    S   +   L  A  G   + + 
Sbjct: 179 VLDLPYAEDVRAHTDMNVVQTGDGRFIEVQGTAEHAPFSRAELSALLDLAALGNARLADA 238

Query: 535 MSKVLSESRLQLGEFTP 551
               LS +  +  E  P
Sbjct: 239 QRAALSGAPGERVEVAP 255



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 61/189 (32%), Gaps = 25/189 (13%)

Query: 29  GAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL            K       +T  Y     A  +       +  R  
Sbjct: 31  GSVLIEFGATRVLCVASFTTGVPRWKRDSGEGWVTAEYAMLPRATDQRSPRESVK-GRVG 89

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL--MLS 141
                ISR+I RS+R +        N   +  +V++ D        S+  A  AL   ++
Sbjct: 90  GRTQEISRLIGRSLRGVVDTRALGENTVTLDCDVLRADGG--TRTASVTGAYIALADAVA 147

Query: 142 GLPFEG-----------PVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                G            V    V  ++G  VL+    ED      +++  +G     + 
Sbjct: 148 WAKRNGAVSPGAKVLTDSVSAISVGIVDGAPVLDLPYAEDVRAHTDMNVVQTG-DGRFIE 206

Query: 188 VELEANQLS 196
           V+  A    
Sbjct: 207 VQGTAEHAP 215


>gi|310820087|ref|YP_003952445.1| ribonuclease ph [Stigmatella aurantiaca DW4/3-1]
 gi|309393159|gb|ADO70618.1| Ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
          Length = 237

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 24/236 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R    +R ++   G+ +   GS+    G T+ IV  ++    +E+    L G   
Sbjct: 1   MRSFQRGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSV----EERVPPHLMGKGT 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T   S      G  S R +   RL  R++   +  +   P TL +  
Sbjct: 57  GWVTAEYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+            + +P   P+A +++G+VK      + 
Sbjct: 117 DVIQADGGTRTASITGAYVALVMALRSLNSKGTLSRMPSLTPLAAVSVGVVKGE----VR 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            D+  +ED    +D  +  T  G I  +Q   +        +   L         +
Sbjct: 173 VDLDYEEDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQL 228



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 28/230 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+ L  G ++R ++G+    +G T V+ T   +  +           +T  Y     + 
Sbjct: 12  RPVTLTPG-VSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVTAEYGMLPRST 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK---CYKNETQVIINVMQHDLESSPH 127
                     + + +   + I R+I RS+R   +      +  T +  +V+Q D      
Sbjct: 71  -HTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLT-LDCDVIQADGG--TR 126

Query: 128 VVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
             S+  A  AL            LS +P   P+    V  + G+  ++   +ED      
Sbjct: 127 TASITGAYVALVMALRSLNSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYEEDSAADVD 186

Query: 174 LDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
           L+L  +G    ++ V+  A         +   +  G    + +  A +K+
Sbjct: 187 LNLVATG-DGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKV 235


>gi|229815851|ref|ZP_04446175.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
 gi|229808546|gb|EEP44324.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
          Length = 244

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 109/252 (43%), Gaps = 25/252 (9%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +  +M+D   R +GR +  +R ++    +++   GS L   GDT+ +   T+    +E  
Sbjct: 1   MEHMMID---RANGRAANQMRTVNLTRDVMKHALGSCLVEFGDTKVLCAATI----EEGV 53

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFP 420
                 + +      Y  LP +T   +R        R +   RL  R++  V+   +   
Sbjct: 54  PGWRKASHQGWVTAEYAMLPASTNRRTRRETNNRKGRSMEIERLIGRSLRTVVNMKSLGE 113

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKD 469
           +T+ +  ++ ++DG +  A++ G+ +AL D           A +P++  VA ++MGLV  
Sbjct: 114 HTVTVDCDVIQADGGTRTASITGAWVALHDALMAWVEAGKIARLPLTGQVAAVSMGLV-- 171

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGR 528
             D   L D+   ED    +D  +  TD+G I  +Q   +        +   L   + G 
Sbjct: 172 --DGCELLDLDYSEDSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGI 229

Query: 529 LHILNEMSKVLS 540
             +++  ++V +
Sbjct: 230 KQLIDLQNEVTA 241



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 28/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R + L T  + + + G+ L  +G+T VL     +  +   +       +T  Y     + 
Sbjct: 18  RTVNL-TRDVMKHALGSCLVEFGDTKVLCAATIEEGVPGWRKASHQGWVTAEYAMLPAST 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
            +                + I R+I RS+R + +     E    V  +V+Q D       
Sbjct: 77  NRRTRRETNNRKG---RSMEIERLIGRSLRTVVNMKSLGEHTVTVDCDVIQADGG--TRT 131

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            S+  A  AL            ++ LP  G V    +  ++G  +L+    ED   +  +
Sbjct: 132 ASITGAWVALHDALMAWVEAGKIARLPLTGQVAAVSMGLVDGCELLDLDYSEDSHAEVDM 191

Query: 175 DLFVSGTQDAVLMVELEANQLSED--VVLDAIIFGHNECKPVIEAISKLAK 223
           +L  +     ++ ++    Q   D   +   +  G    K +I+  +++  
Sbjct: 192 NLVAT-DAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241


>gi|294787314|ref|ZP_06752567.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
 gi|294484670|gb|EFG32305.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
          Length = 260

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 95/252 (37%), Gaps = 26/252 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +    G  Q   GS L   G+T+ +   T      +        +  
Sbjct: 17  IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFT----QGVPRWRRDSGL 72

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT + +      G    R     RL  R +  ++   A     ++I  
Sbjct: 73  GWVTAEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDC 132

Query: 428 EITESDGSSSMATVCGSSLALMD------AGVPIS-------KPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL D          I          V+ +++G++    +  
Sbjct: 133 DVLQADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGII----NGT 188

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    S   +   L  A++G   +  
Sbjct: 189 PMLDLPYVEDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQG 248

Query: 534 EMSKVLSESRLQ 545
             ++ L ++  Q
Sbjct: 249 MQAEALEQAINQ 260



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 26/237 (10%)

Query: 14  RPLKLETGRIARQS-DGAVLATYGETVVLATVVYDRS-LKDGQDFFP--LTVNYQERTYA 69
           RP+K+  G    Q+ +G+VL   G T VL T  + +   +  +D     +T  Y     A
Sbjct: 28  RPVKITRGW--TQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVTAEYAMIPRA 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
                     +  +       ISR+I R +R +        N+ Q+  +V+Q D  +   
Sbjct: 86  TADRTDRESVK-GKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQADGGTRTA 144

Query: 128 VVSMVAASAALMLSGLPFEGPV-----------VGAQVDYINGQYVLN-PRLDEDQG--S 173
            V+    + A  +S       +               V  ING  +L+ P +++ Q    
Sbjct: 145 SVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYVEDSQAMTD 204

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +++ ++G+ + +  ++  A     S   +   +       + +    ++  +    +
Sbjct: 205 MNVAMTGSGNFI-EIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQAINQ 260


>gi|315227127|ref|ZP_07868914.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
 gi|315119577|gb|EFT82710.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
          Length = 263

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 95/252 (37%), Gaps = 26/252 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +    G  Q   GS L   G+T+ +   T      +        +  
Sbjct: 20  IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFT----QGVPRWRRDSGL 75

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P AT + +      G    R     RL  R +  ++   A     ++I  
Sbjct: 76  GWVTAEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDC 135

Query: 428 EITESDGSSSMATVCGSSLALMD------AGVPIS-------KPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A+V G+ +AL D          I          V+ +++G++    +  
Sbjct: 136 DVLQADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGII----NGT 191

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    S   +   L  A++G   +  
Sbjct: 192 PMLDLPYVEDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQG 251

Query: 534 EMSKVLSESRLQ 545
             ++ L ++  Q
Sbjct: 252 MQAEALEQAINQ 263



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 26/237 (10%)

Query: 14  RPLKLETGRIARQS-DGAVLATYGETVVLATVVYDRS-LKDGQDFFP--LTVNYQERTYA 69
           RP+K+  G    Q+ +G+VL   G T VL T  + +   +  +D     +T  Y     A
Sbjct: 31  RPVKITRGW--TQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVTAEYAMIPRA 88

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
                     +  +       ISR+I R +R +        N+ Q+  +V+Q D  +   
Sbjct: 89  TADRTDRESVK-GKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQADGGTRTA 147

Query: 128 VVSMVAASAALMLSGLPFEGPV-----------VGAQVDYINGQYVLN-PRLDEDQG--S 173
            V+    + A  +S       +               V  ING  +L+ P +++ Q    
Sbjct: 148 SVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYVEDSQAMTD 207

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +++ ++G+ + +  ++  A     S   +   +       + +    ++  +    +
Sbjct: 208 MNVAMTGSGNFI-EIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQAINQ 263


>gi|270308459|ref|YP_003330517.1| ribonuclease PH [Dehalococcoides sp. VS]
 gi|270154351|gb|ACZ62189.1| ribonuclease PH [Dehalococcoides sp. VS]
          Length = 239

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 24/244 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+   +R I+   G      GS L  +G T+ I  V+     +++    L  +   
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVS----MEDKVPQFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T   ++     G  S R     RL  R++   +  TA    +  I  +
Sbjct: 59  WVTAEYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLTALGERSFIIDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A++ G+ +AL       +D G+    P +  VA +++ + K      I+ 
Sbjct: 119 VIQADAGTRTASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGN----IVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D   DED    +DF +   D      +Q   +    S + +   L+  + G   + +  +
Sbjct: 175 DPCYDEDFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFDIQN 234

Query: 537 KVLS 540
            +  
Sbjct: 235 SITR 238



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +  G     ++G+VL   G+T V+ +V  +  +           +T  Y     + 
Sbjct: 13  RPITITPG-FQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNETQVIINVMQHDLESSPH 127
                       + +     I R+I RS+R    L +   ++   +  +V+Q D      
Sbjct: 72  -VTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLTALGERSFI-IDCDVIQADAG--TR 127

Query: 128 VVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL L           S +PF   V    V    G  VL+P  DED   +  
Sbjct: 128 TASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDEDFQAEVD 187

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +L ++   + V +    E    S D +   +  G +  K + +  + +
Sbjct: 188 FNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFDIQNSI 236


>gi|77410282|ref|ZP_00786723.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
 gi|77171109|gb|EAO74537.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
          Length = 182

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 94/180 (52%), Gaps = 7/180 (3%)

Query: 155 DYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKP 213
            Y++G +++NP   E + S L+L V+GT++A+ MVE  A +LSE+++L+A++ GH     
Sbjct: 1   AYVDGNFIINPTAQEQEASALELTVAGTKEAINMVESGAKELSEEIMLEALLKGHEAVCE 60

Query: 214 VIEAISKLAKMCAKEPIVID-SKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLK 272
           +I    ++     KE   ++  +   +L+ E+       L+ +  + EK  R    + +K
Sbjct: 61  LIAFQEEIVTAIGKEKAEVELLQVDPELQAEIIATHNIALQAAVQVEEKKAREAATEAVK 120

Query: 273 KKMVSYFSSEHSSWNE-----GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISA 327
           + ++  + + ++   E      ++  + E ++   VR ++ + K R DGR  + +R + A
Sbjct: 121 EVVIGEYEARYAEHEEYDRIMRDVAEILEQMEHAEVRRLITEDKGRPDGRRVDEIRPLDA 180


>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 1/194 (0%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R DGR +   R I  ++G+     GS++  +G+T+ +  V  G R+      
Sbjct: 2   ELLSDEGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAV-FGPRQPMASQH 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                ++    + Y+    A+ E  R     ++        ++     +  T      + 
Sbjct: 61  GAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAIS 120

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG      V  ++LAL+DAG+PI      ++ G+    +    L D++  E+
Sbjct: 121 IFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEE 180

Query: 485 HLGHMDFKVAGTDS 498
                     G   
Sbjct: 181 SARIPTIVATGMPK 194



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL------KDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           +DG+ +   G T VLA V   R           Q+   + V Y    +A  +      +R
Sbjct: 32  ADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCIVDVEYSRAAFASAE-----RKR 86

Query: 81  ESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
            +R  +    IS  + ++           ++   + + V+Q D       V + AA+ AL
Sbjct: 87  RARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVLQADGGDYA--VCVNAATLAL 144

Query: 139 MLSGLPFEGPVVGAQVD 155
           + +G+P           
Sbjct: 145 IDAGIPIRDVCCAVSCG 161


>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 1/194 (0%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D+  R DGR +   R I  ++G+     GS++  +G+T+ +  V  G R+      
Sbjct: 2   ELLSDEGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAV-FGPRQPMASQH 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                ++    + Y+    A+ E  R     ++        ++     +  T      + 
Sbjct: 61  GAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAIS 120

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ ++DG      V  ++LAL+DAG+PI      ++ G+    +    L D++  E+
Sbjct: 121 IFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEE 180

Query: 485 HLGHMDFKVAGTDS 498
                     G   
Sbjct: 181 SARIPTIVATGMPK 194



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL------KDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           +DG+ +   G T VLA V   R           Q+   + V Y    +A  +      +R
Sbjct: 32  ADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCIVDVEYSRAAFASAE-----RKR 86

Query: 81  ESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
            +R  +    IS  + ++           ++   + + V+Q D       V + AA+ AL
Sbjct: 87  RARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVLQADGGDYA--VCVNAATLAL 144

Query: 139 MLSGLPFEGPVVGAQVD 155
           + +G+P           
Sbjct: 145 IDAGIPIRDVCCAVSCG 161


>gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD]
 gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD]
          Length = 253

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 26/236 (11%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R+DGR+ + +R +           GS L   G+T+ +   T               +
Sbjct: 12  KPIRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVG----VPRWRRDS 67

Query: 370 QRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                   Y+ LP AT E     S  G    R     RL  R +  V+   A     ++I
Sbjct: 68  GLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQI 127

Query: 426 VSEITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDD 472
             ++ ++DG +  A+V G+ +AL+D             A   I   ++ +++G++    +
Sbjct: 128 DCDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVI----N 183

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
              + D+   ED     D  VA T SG    +Q   +    + + +   L  A +G
Sbjct: 184 GTPMLDLPYVEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 239



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 27/188 (14%)

Query: 29  GAVLATYGETVVLATVVYD-RSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +     +  +D     +T  Y     A  +       R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVTAEYSMLPRATAERTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I R +R +       E   Q+  +V+Q D        S+  A  AL     
Sbjct: 98  GRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQADGG--TRTASVTGAYVALVDALN 155

Query: 139 ----------MLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAV-L 186
                       S +  +  +    V  ING  +L+ P +++ Q   D+ V+ T     +
Sbjct: 156 WAEKNGHIRSAASVI--KDSISAVSVGVINGTPMLDLPYVEDSQAMTDMNVAMTGSGTFI 213

Query: 187 MVELEANQ 194
            ++  A  
Sbjct: 214 EIQGTAEH 221


>gi|157826032|ref|YP_001493752.1| ribonuclease PH [Rickettsia akari str. Hartford]
 gi|166228310|sp|A8GPB9|RNPH_RICAH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157799990|gb|ABV75244.1| ribonuclease PH [Rickettsia akari str. Hartford]
          Length = 239

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L  T GS +   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINTEGSCIIKIGNTHVMCSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +     G    R     RL  R++  V+         + I  
Sbjct: 57  GWVTAEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A++ GS +AL                P+   +A ++ G+ K       +
Sbjct: 117 DVINADGGTRTASITGSYVALHLAIRSLMKKRILKVNPLISQIAAVSCGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDAEVDSNFVFAGNGNLIEVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 38/235 (16%)

Query: 14  RPLKLETGRIARQSD--GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTY 68
           RP+ LE   ++   +  G+ +   G T V+ +   + ++     GQ+   +T  Y     
Sbjct: 12  RPISLE---LSPLINTEGSCIIKIGNTHVMCSATCETTVPPFLRGQNQGWVTAEY----- 63

Query: 69  AVGKIPGGY---LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
             G +PG     ++RE    +       I R+I RS+R +       E Q+II+    + 
Sbjct: 64  --GMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDCDVINA 121

Query: 123 ESSPHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED- 170
           +      S+  +  AL L+        +    P    +         G+ +L+    ED 
Sbjct: 122 DGGTRTASITGSYVALHLAIRSLMKKRILKVNPLISQIAAVSCGIYKGEAILDLDYLEDS 181

Query: 171 --QGSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
             +   +   +G  + +  V+  A Q   SE+  ++ +         + +  +++
Sbjct: 182 DAEVDSNFVFAGNGNLI-EVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQNQV 235


>gi|294787659|ref|ZP_06752903.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
 gi|294483952|gb|EFG31635.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
          Length = 245

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 18/235 (7%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R+I+ Q   L    GS L   G+T+ I   T+    D+     L G        
Sbjct: 12  RAANELREITIQPNFLPHADGSVLISCGNTKVICTATI----DQNVPSFLRGKGEGWVTA 67

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    +     G  S R     RL  R++   +         + I  ++ ++
Sbjct: 68  EYGMLPASTQSRMKREAASGKQSGRTQEIQRLIGRSLRACVDMKKLGERQILIDCDVIQA 127

Query: 433 DGSSSMATVCGSSLALM--------DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           DG +   ++ G+ +AL         D  +P + P+ G    +       + L D+   ED
Sbjct: 128 DGGTRTTSITGAFVALKMAIQKMLNDGRLPET-PLIGSVAAVSVGVVGGVPLLDLDYPED 186

Query: 485 HLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  +   +   I  +Q   +    S   +   +   ++G   +     K 
Sbjct: 187 SNCDSDVNLVMLNADKIIEIQGTAEGAAFSLAELQTLIALGQKGITQLAQLQQKA 241



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R + ++   +   +DG+VL + G T V+ T   D+++     G+    +T  Y     + 
Sbjct: 18  REITIQPNFL-PHADGSVLISCGNTKVICTATIDQNVPSFLRGKGEGWVTAEYGMLPAST 76

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  ++RE    + +     I R+I RS+R         E Q++   +V+Q D    
Sbjct: 77  ----QSRMKREAASGKQSGRTQEIQRLIGRSLRACVDMKKLGERQILIDCDVIQADGG-- 130

Query: 126 PHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---Q 171
               S+  A  AL ++             P  G V    V  + G  +L+    ED    
Sbjct: 131 TRTTSITGAFVALKMAIQKMLNDGRLPETPLIGSVAAVSVGVVGGVPLLDLDYPEDSNCD 190

Query: 172 GSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKL 221
             ++L +    D ++ ++  A     S   +   I  G      + +   K 
Sbjct: 191 SDVNLVML-NADKIIEIQGTAEGAAFSLAELQTLIALGQKGITQLAQLQQKA 241


>gi|257126136|ref|YP_003164250.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
 gi|257050075|gb|ACV39259.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
          Length = 231

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 24/227 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R + R ++ +R++      +    GS L   G+T+ I   T+    +E+    L GT  
Sbjct: 1   MRNNNRKNDEMREVKVTKNYIIHPEGSVLIEFGNTKVICNATV----EEKIPRWLRGTGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT    +     G  S R +   RL  RA+   +        T+ I  
Sbjct: 57  GWITAEYSMLPRATNTRVQRESTKGKLSGRTMEIQRLIGRALRATIDLEKLGERTIMIDC 116

Query: 428 EITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ LAL               +PI   VA I++G V++     + 
Sbjct: 117 DVIQADGGTRTASITGAYLALELAIEKLIDERKLKEMPIKAKVAAISVGKVRNELLLDLE 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQ 522
                +ED    +D  +   D G    +Q   +    ++  ++  ++
Sbjct: 177 Y----EEDSRADVDMNIVMNDKGEFIELQGTGEEATFTQTELLKFIE 219



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 68/210 (32%), Gaps = 25/210 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T V+     +  +     G     +T  Y     A           + + +
Sbjct: 26  GSVLIEFGNTKVICNATVEEKIPRWLRGTGSGWITAEYSMLPRATN-TRVQRESTKGKLS 84

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R      K  +    +  +V+Q D        S+  A  AL L+  
Sbjct: 85  GRTMEIQRLIGRALRATIDLEKLGERTIMIDCDVIQADGG--TRTASITGAYLALELAIE 142

Query: 142 ---------GLPFEGPVVGAQVDYING---QYVLNPRLDEDQGSLDLFVSGTQDAVLMVE 189
                     +P +  V    V  +       +           +++ ++  +   + ++
Sbjct: 143 KLIDERKLKEMPIKAKVAAISVGKVRNELLLDLEYEEDSRADVDMNIVMN-DKGEFIELQ 201

Query: 190 LEANQ--LSEDVVLDAIIFGHNECKPVIEA 217
               +   ++  +L  I    N    + + 
Sbjct: 202 GTGEEATFTQTELLKFIELSKNAFDKLFKL 231


>gi|254166930|ref|ZP_04873784.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|254168500|ref|ZP_04875344.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289596090|ref|YP_003482786.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197622555|gb|EDY35126.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197624540|gb|EDY37101.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289533877|gb|ADD08224.1| ribonuclease PH [Aciduliprofundum boonei T469]
          Length = 234

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 22/239 (9%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
            R  + +R++       ++ +GS+L  +GDT  +       +  E   D L         
Sbjct: 3   NRKPDEIRNVEIIPNYQKKPYGSALIKQGDTVVLCSA----QVIENVPDWLKEQNSGWLT 58

Query: 376 MHYNFLPCATGEV--SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
             Y+ LP ++        G  + R     R+  R +   +      P T+ I  ++ ++D
Sbjct: 59  AEYSMLPGSSETRIFRDRGHVNGRSKEIERIIGRCLRAAVDLKKLGPRTIWIDCDVIQAD 118

Query: 434 GSSSMATVCGSSLA-------LMDAG----VPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           G +  A++    +A       LM  G     PI   VA I+ G+V        L D++ +
Sbjct: 119 GGTRTASITAGFVALSLAIRRLMKEGKLGENPIKYKVAAISAGIVNGEP----LLDLAYE 174

Query: 483 EDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           ED    +D  +A  + G    +Q   +   +S   + + L  A++G   +  +  + L+
Sbjct: 175 EDSQADVDINIAMNEEGKYIEIQGTSEKEPLSRENLNILLDLAEKGIKELFKKQEEALN 233



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 25/213 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+ L   G+TVVL +     ++ D    Q+   LT  Y       G       R      
Sbjct: 24  GSALIKQGDTVVLCSAQVIENVPDWLKEQNSGWLTAEYSMLP---GSSETRIFRDRGHVN 80

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
                I R+I R +R      K       +  +V+Q D        S+ A   AL L+  
Sbjct: 81  GRSKEIERIIGRCLRAAVDLKKLGPRTIWIDCDVIQADGG--TRTASITAGFVALSLAIR 138

Query: 142 ---------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD-AVLMVEL 190
                      P +  V       +NG+ +L+   +ED Q  +D+ ++  ++   + ++ 
Sbjct: 139 RLMKEGKLGENPIKYKVAAISAGIVNGEPLLDLAYEEDSQADVDINIAMNEEGKYIEIQG 198

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
            + +  LS + +   +       K + +   + 
Sbjct: 199 TSEKEPLSRENLNILLDLAEKGIKELFKKQEEA 231


>gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 236

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 103/234 (44%), Gaps = 17/234 (7%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R D R    +R + A+ G++    GS+ F  G+T+AI  V  G   +E     +    
Sbjct: 3   EERFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAV-YGP--EEVKPRHIEKVD 59

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R   +  Y+ LP +  + ++ G   RR+I   ++   A++  +         + +   IT
Sbjct: 60  RGVIVCKYDMLPFSVPDRAKPGM-DRRDIEISQVITNALNRAIILEDMPRAMINVRVYIT 118

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL---- 486
           ++D  +  A++  +S+A  DAG+P+   VA +A G + D     +  D+S +E+      
Sbjct: 119 QADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGD----HVCLDLSKEEEDFHEGE 174

Query: 487 --GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
               +      + + I  +Q+D   G +S + +   ++  K G + I     + 
Sbjct: 175 GATDVPIAFLPSKNEILLLQLD---GRVSRDELKKVIEVGKEGAMKIYELEKEA 225



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 23/223 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           RP++ ETG +   + G+     G T  +A V     +K       D   +   Y    ++
Sbjct: 15  RPMEAETGVV-PNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIVCKYDMLPFS 73

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSI-RPLFSKCY-KNETQVIINVMQHDLESSPH 127
           V        R +      +I IS++I  ++ R +  +   +    V + + Q D      
Sbjct: 74  V------PDRAKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAG--TR 125

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-------QGSLDLFVSG 180
             S+ AAS A   +GLP    V       I     L+   +E+          + +    
Sbjct: 126 CASLTAASMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFHEGEGATDVPIAFLP 185

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +++ +L+++L+   +S D +   I  G      + E   +  K
Sbjct: 186 SKNEILLLQLDGR-VSRDELKKVIEVGKEGAMKIYELEKEALK 227


>gi|226226977|ref|YP_002761083.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
 gi|226090168|dbj|BAH38613.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
          Length = 247

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 22/240 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +E +R +S + G +    GS L   G T+ +   ++ T           G+       
Sbjct: 13  RSNEALRPVSLERGAVLYAEGSCLISFGKTRVLCAASVETG----VPGWKKGSGEGWVTA 68

Query: 377 HYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
            Y  LP AT   S         R     RL  R++  +L       +T+++  ++ ++DG
Sbjct: 69  EYAMLPRATRTRSSRERQQVGGRTQEIQRLIGRSVRAMLDDYRFGEFTIKVDCDVLQADG 128

Query: 435 SSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  A + G+ +A+ DA             P+ + VA I++G+V    D  +  D+  +E
Sbjct: 129 GTRTAAITGACVAVQDAFNWMVSTGRIIASPVKRRVAAISVGMV----DGEVRLDLDYEE 184

Query: 484 DHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           D    +D  V  +  G    +Q   + G  S   +   L  A  G   +L   ++VL+  
Sbjct: 185 DVRAGVDMNVVMSSEGRFVEVQGTGEHGTFSRQELDGLLGTAVAGIEQLLEAQTRVLAGP 244



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 26/230 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+ LE G +   ++G+ L ++G+T VL            K G     +T  Y     A 
Sbjct: 19  RPVSLERGAVLY-AEGSCLISFGKTRVLCAASVETGVPGWKKGSGEGWVTAEYAMLPRA- 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                   R   +       I R+I RS+R +       E   +V  +V+Q D       
Sbjct: 77  --TRTRSSRERQQVGGRTQEIQRLIGRSVRAMLDDYRFGEFTIKVDCDVLQADGG--TRT 132

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL 176
            ++  A  A+  +             P +  V    V  ++G+  L+   +ED +  +D+
Sbjct: 133 AAITGACVAVQDAFNWMVSTGRIIASPVKRRVAAISVGMVDGEVRLDLDYEEDVRAGVDM 192

Query: 177 -FVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             V  ++   + V+        S   +   +       + ++EA +++  
Sbjct: 193 NVVMSSEGRFVEVQGTGEHGTFSRQELDGLLGTAVAGIEQLLEAQTRVLA 242


>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
          Length = 272

 Score =  136 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 96/258 (37%), Gaps = 28/258 (10%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
              +R+DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G R+      +   
Sbjct: 9   QGGLRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAV-YGPRQS--RSSASRN 65

Query: 369 TQRNDFMMHYNFLPCAT--GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           + +      Y+    +   GE  R      +        R A+  ++         + + 
Sbjct: 66  STKAIINCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVF 125

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----DGDDFII---LSDI 479
            E+ + DGS   A+V  ++LAL+DAG+PI     G ++ LV     + +D  +   + D 
Sbjct: 126 VEVLQVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATGVLDA 185

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI--------------SENIMVMALQQAK 525
           +  E+    +   V       T   +++   G+                  +   + Q  
Sbjct: 186 NYVEECSPGVTLSVVALAG--TNNDIEVDGNGLIVVAHGAGQRLHLSCLETLKQRVLQGC 243

Query: 526 RGRLHILNEMSKVLSESR 543
           +    IL+   +    + 
Sbjct: 244 QDIKTILDHGVRHHLTAN 261



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           R +++  G    Q+DG+    +G T VLA V   R  +           +   Y    ++
Sbjct: 23  RQIRMRMGVFG-QADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAIINCQYSMAVFS 81

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
                 G  +R  R        S  +  ++  +       +++  V + V+Q D      
Sbjct: 82  ---FTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVEVLQVDGSDY-- 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL 174
             S+ AA+ AL+ +G+P +   +G  V  +N      P ++++  +L
Sbjct: 137 CASVNAATLALIDAGIPIKNYAIGCSVTLVNK-----PSVEDEDKTL 178


>gi|57233914|ref|YP_182001.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
 gi|123618391|sp|Q3Z6Z8|RNPH_DEHE1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|57224362|gb|AAW39419.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
          Length = 239

 Score =  136 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 24/244 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+   +R I+   G      GS L  +G T+ I  V+     +++    L  +   
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVS----MEDKVPQFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T   ++     G  S R     RL  R++   +   A    +  I  +
Sbjct: 59  WVTAEYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFIIDCD 118

Query: 429 ITESDGSSSMATVCGSSLAL-------MDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A++ G+ +AL       +D G+    P +  VA +++ + K      I+ 
Sbjct: 119 VIQADAGTRTASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGN----IVL 174

Query: 478 DISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D   DED    +DF +   D      +Q   +    S + +   L+  + G   + +  +
Sbjct: 175 DPCYDEDFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAGIWQLFDIQN 234

Query: 537 KVLS 540
            +  
Sbjct: 235 SITR 238



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +  G     ++G+VL   G+T V+ +V  +  +           +T  Y     + 
Sbjct: 13  RPITITPG-FQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNETQVIINVMQHDLESSPH 127
                       + +     I R+I RS+R    L +   ++   +  +V+Q D      
Sbjct: 72  -VTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFI-IDCDVIQADAG--TR 127

Query: 128 VVSMVAASAALML-----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             S+  A  AL L           S +PF   V    V    G  VL+P  DED   +  
Sbjct: 128 TASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDEDFQAEVD 187

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +L ++   + V +    E    S D +   +  G      + +  + +
Sbjct: 188 FNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAGIWQLFDIQNSI 236


>gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4]
 gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4]
          Length = 258

 Score =  136 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 97/255 (38%), Gaps = 22/255 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+ + +R++    G  +   GS L   G+T+ +   ++     E      +G+   
Sbjct: 3   RKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASVT----EGVPRWRAGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    T+ I  +
Sbjct: 59  WVTAEYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA----------GVPISKPVAGIAMGLVKDGDDFIILSD 478
           + ++DG +  A V G  +AL DA            P  +P++     +     D  +  D
Sbjct: 119 VIQADGGTRTAAVTGGYVALADAITWLGAANRLNDP--QPLSSSVAAVSVGVVDGRVRLD 176

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +ED    +D  V  TD+G +  +Q   +    + + +   L  A  G   +     +
Sbjct: 177 LPYEEDSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDLALAGCEELTRLQKE 236

Query: 538 VLSESRL-QLGEFTP 551
            L+     +L E  P
Sbjct: 237 ALALPYPGELPEPRP 251



 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 40/235 (17%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL        +   + G     +T  Y     A          +  R  
Sbjct: 27  GSVLVEFGNTRVLCAASVTEGVPRWRAGSGLGWVTAEYAMLPSATNTRSDREAVK-GRIG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLSGL 143
                ISR+I RS+R         E  ++   +V+Q D        ++     AL  + +
Sbjct: 86  GRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQADGG--TRTAAVTGGYVALADA-I 142

Query: 144 PFEGPVVGAQVDYI---------------NGQYVLN-PRLDEDQGSLDLFVSGTQDAVLM 187
            + G     +++                 +G+  L+ P  ++ +  +D+ V  T    L+
Sbjct: 143 TWLG--AANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDAGTLI 200

Query: 188 VELEANQ------LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
                 +       + D +LD  + G        E +++L K     P   +  +
Sbjct: 201 EVQGTGEGATFARSTLDTMLDLALAG-------CEELTRLQKEALALPYPGELPE 248


>gi|299139261|ref|ZP_07032437.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
 gi|298598941|gb|EFI55103.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
          Length = 248

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 91/247 (36%), Gaps = 24/247 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            ++  R  GR +   R +    G +    GS L   G T+ +   T+    +      + 
Sbjct: 6   KEELFRSGGRAASQARALRLTPGFVATAEGSVLIEVGHTRVLCNATV----ENGVPGWMR 61

Query: 368 GTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            + R      Y  LP AT       S  G    R     RL  R++  V+        T+
Sbjct: 62  NSGRGWVTAEYGMLPRATLTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDD 472
            +  ++ ++DG +  A + G+  AL                P+ + VA  ++G+V    D
Sbjct: 122 ILDCDVLQADGGTRTAAITGACTALALALGKLVQAGSLKESPLKQMVAATSVGIV----D 177

Query: 473 FIILSDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             +L D++ +ED    +D  V  T D G+   Q   + G  +   +   L  A  G   +
Sbjct: 178 GRVLLDLAYEEDSRAEVDMNVVMTADGGLVETQATAERGTYTRAQLNEMLDVAAVGIEEL 237

Query: 532 LNEMSKV 538
           L    + 
Sbjct: 238 LKAQREC 244



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 82/228 (35%), Gaps = 26/228 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R L+L  G +A  ++G+VL   G T VL     +  +           +T  Y     A 
Sbjct: 21  RALRLTPGFVAT-AEGSVLIEVGHTRVLCNATVENGVPGWMRNSGRGWVTAEYGMLPRAT 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
                       +       I R+I RS+R +       E  +I   +V+Q D       
Sbjct: 80  -LTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTIILDCDVLQADGG--TRT 136

Query: 129 VSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL L+             P +  V    V  ++G+ +L+   +ED   +  +
Sbjct: 137 AAITGACTALALALGKLVQAGSLKESPLKQMVAATSVGIVDGRVLLDLAYEEDSRAEVDM 196

Query: 175 DLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAISK 220
           ++ ++     ++  +  A     +   + + +       + +++A  +
Sbjct: 197 NVVMTA-DGGLVETQATAERGTYTRAQLNEMLDVAAVGIEELLKAQRE 243


>gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
 gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
          Length = 255

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 98/263 (37%), Gaps = 26/263 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M +  +R DGR    +R +S   G      GS L   G+T+ + V +      E      
Sbjct: 1   MTNTPLRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFT----EGVPRWK 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
             +        Y+ LP AT + S      G    R     RL  R++  ++  +A    T
Sbjct: 57  RDSGEGWVTGEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENT 116

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMD-------AGV--P----ISKPVAGIAMGLVKD 469
           + +  ++  +DG +  A + G+ +AL D        G+  P    ++  ++ I++G++  
Sbjct: 117 IVLDCDVLRADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVI-- 174

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGR 528
             D   + D+   ED     D  V  T  G    +Q   +    + + +   L  A  G 
Sbjct: 175 --DGTPMLDLPYVEDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGN 232

Query: 529 LHILNEMSKVLSESRLQLGEFTP 551
             +       L    ++  E  P
Sbjct: 233 ARLAEAQKLALEAPLMERVEVRP 255



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 29/215 (13%)

Query: 29  GAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           G++L  +G T VL        V       G+ +  +T  Y     A  +       +  +
Sbjct: 31  GSILIEFGNTRVLCVASFTEGVPRWKRDSGEGW--VTGEYSMLPRATEQRSSRESVK-GK 87

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALML- 140
                  ISR+I RS+R +       E  ++   +V++ D        ++  A  AL   
Sbjct: 88  VGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGG--TRTAAITGAYVALADA 145

Query: 141 ------------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDA-VL 186
                       S       +    V  I+G  +L+ P +++ +   D+ V  T D   +
Sbjct: 146 VSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYVEDVRAETDMNVVQTGDGRFI 205

Query: 187 MVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
            V+  A       D + + +         + EA  
Sbjct: 206 EVQGTAEHAPFNRDELNELLDLATLGNARLAEAQK 240


>gi|992693|gb|AAB01514.1| RNase PH [Caulobacter crescentus CB15]
          Length = 238

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 25/237 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+ +    + L   G T+ +V  T+    +E     +     
Sbjct: 1   MRPSERAPDQLRAVTLETGVNRYA-RALLIGFGHTKVLVTATV----EENVPGWMRNKGA 55

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT    R     G  + R     RL  R++  V+   A     + +  
Sbjct: 56  GWVTAEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDC 115

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A + G+ +A       L+D GV    PI   VA ++ G+     + + +
Sbjct: 116 DVVQADGGTRTAAITGAWVALRLATKYLLDEGVLKTDPILGQVAAVSCGVF----NGVPV 171

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+  +ED     D     T  G I  +Q   +  G +           + G    +
Sbjct: 172 LDLDYEEDSNAEADSNFVLTGVGDIVEIQATGETRGFTRAEFESLYGAGREGVQRTV 228



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 84/234 (35%), Gaps = 35/234 (14%)

Query: 14  RPLKLETG--RIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTY 68
           R + LETG  R AR    A+L  +G T VL T   + ++      +    +T  Y     
Sbjct: 12  RAVTLETGVNRYAR----ALLIGFGHTKVLVTATVEENVPGWMRNKGAGWVTAEYGMLPR 67

Query: 69  AVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLE 123
           A         RRE    + T     I R+I RS+R +       E Q+    +V+Q D  
Sbjct: 68  AT----HTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQADGG 123

Query: 124 SSPHVVSMVAASAALMLSGL-----------PFEGPVVGAQVDYINGQYVLNPRLDED-- 170
                 ++  A  AL L+             P  G V        NG  VL+   +ED  
Sbjct: 124 --TRTAAITGAWVALRLATKYLLDEGVLKTDPILGQVAAVSCGVFNGVPVLDLDYEEDSN 181

Query: 171 -QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
            +   +  ++G  D V +    E    +          G    +  +  +++LA
Sbjct: 182 AEADSNFVLTGVGDIVEIQATGETRGFTRAEFESLYGAGREGVQRTVRLLARLA 235


>gi|67458795|ref|YP_246419.1| ribonuclease PH [Rickettsia felis URRWXCal2]
 gi|75535816|sp|Q4UJN4|RNPH_RICFE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|67004328|gb|AAY61254.1| Ribonuclease PH [Rickettsia felis URRWXCal2]
          Length = 239

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP +T +  +     G    R     RL  R +  V+         + I  
Sbjct: 57  GWVTAEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRNMRCVIDLKKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A ++ G+ K       +
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLISQIAAVSCGIYKGE----AI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G   +    
Sbjct: 173 LDLDYLEDSDAEVDSNFVFAGNGNLIEVQGTAEKEPFSEEQFIAMLKLAKGGAAELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +   + ++     GQ+   +T  Y       
Sbjct: 12  RPISLELSPLI-NAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWVTAEY------- 63

Query: 71  GKIPGGY---LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           G +PG     ++RE    +       I R+I R++R +       E Q+II+    + + 
Sbjct: 64  GMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRNMRCVIDLKKLGERQIIIDCDVINADG 123

Query: 125 SPHVVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED--- 170
                ++  +  AL L+        +    P    +         G+ +L+    ED   
Sbjct: 124 GTRTAAITGSYVALHLAIRSLMKKRILKVNPLISQIAAVSCGIYKGEAILDLDYLEDSDA 183

Query: 171 QGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +   +   +G  + + +    E    SE+  +  +         + +  +++
Sbjct: 184 EVDSNFVFAGNGNLIEVQGTAEKEPFSEEQFIAMLKLAKGGAAELFKLQNQV 235


>gi|332295803|ref|YP_004437726.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
 gi|332178906|gb|AEE14595.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
          Length = 241

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R I      L    GS L   G+T+ I   ++    +++    L G+       
Sbjct: 7   RKNDELRHIEIIKDFLIYPEGSVLISFGNTKVICNASV----EDKVPPFLKGSGSGWITS 62

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ +P AT + +      G  S R     R+  R++   +  +     T+ I +E+ ++
Sbjct: 63  EYSMIPRATQDRNVRESTSGKISGRNQEIQRIIGRSLRSAVDLSLLGERTIYIDAEVIQA 122

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           D  +  A++ G  +AL           +    P+   VA +++ ++ D     ++ D + 
Sbjct: 123 DAGTRCASITGGFVALVLALRKLKEYGLIKTSPLKYYVAAVSVAVLNDE----VILDPNF 178

Query: 482 DEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           +ED +  +D  +   ++  I  +Q   +    S+  +   L  A  G   I+    KVL 
Sbjct: 179 EEDVIADVDLNIIANENREIIEIQGTAEKKPFSKEKLNEILYIAYSGIEKIIAIQKKVLK 238

Query: 541 ESR 543
            +R
Sbjct: 239 LTR 241



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 23/216 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL ++G T V+     +  +     G     +T  Y     A  +          + +
Sbjct: 27  GSVLISFGNTKVICNASVEDKVPPFLKGSGSGWITSEYSMIPRAT-QDRNVRESTSGKIS 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
                I R+I RS+R         E    +   V+Q D        S+     AL+L+  
Sbjct: 86  GRNQEIQRIIGRSLRSAVDLSLLGERTIYIDAEVIQADAG--TRCASITGGFVALVLALR 143

Query: 142 ---------GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA-VLMVEL 190
                      P +  V    V  +N + +L+P  +ED    +DL +   ++  ++ ++ 
Sbjct: 144 KLKEYGLIKTSPLKYYVAAVSVAVLNDEVILDPNFEEDVIADVDLNIIANENREIIEIQG 203

Query: 191 EANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            A +   S++ + + +   ++  + +I    K+ K+
Sbjct: 204 TAEKKPFSKEKLNEILYIAYSGIEKIIAIQKKVLKL 239


>gi|261337982|ref|ZP_05965866.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
 gi|270277482|gb|EFA23336.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
          Length = 255

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R I           GS L   G+T+ +   T      +        + +
Sbjct: 14  VRPDGRAVDEMRPIRITDSFTDVPEGSVLIACGNTRVMCTATFT----QGVPRWRKDSGQ 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y+ LP AT E     S  G    R     RL  R +  V+   A     +++  
Sbjct: 70  GWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVNMKALGENQIQLDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +A+++             A   I   V+ +++G++    +  
Sbjct: 130 DVLQADGGTRTASITGAYVAMVEALRWAEERRFIRSADKVIKDSVSAVSVGVI----NGT 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D+   ED     D  VA T SG    +Q   +    + + + + L  A +G   +  
Sbjct: 186 PMLDLPYIEDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFTRDELNVLLDLATKGNKELQA 245

Query: 534 EMSKVLSE 541
               VL+ 
Sbjct: 246 AQRAVLNA 253



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  + + +   +       +T  Y     A  +       R  +  
Sbjct: 39  GSVLIACGNTRVMCTATFTQGVPRWRKDSGQGWVTAEYSMLPRATAERTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I R +R + +      N+ Q+  +V+Q D        S+  A  A++    
Sbjct: 98  GRTHEISRLIGRCLRGVVNMKALGENQIQLDCDVLQADGG--TRTASITGAYVAMVEALR 155

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                     +    +  V    V  ING  +L+ P +++ Q    +++ ++G+ + +  
Sbjct: 156 WAEERRFIRSADKVIKDSVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGEFI-E 214

Query: 188 VELEANQ--LSEDVVLDAIIFGHNECKPVIEAI 218
           ++  A     + D +   +       K +  A 
Sbjct: 215 IQGTAEHRPFTRDELNVLLDLATKGNKELQAAQ 247


>gi|298345213|ref|YP_003717900.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304390773|ref|ZP_07372725.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235274|gb|ADI66406.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304325656|gb|EFL92902.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 257

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 94/254 (37%), Gaps = 24/254 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R+++  +  +    G  L   G+T+ +   +L     E        +   
Sbjct: 7   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLT----EGVPRWRKDSGFG 62

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R     RL  RA+   +   A    T+ I  +
Sbjct: 63  WVTAEYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL  A           G P    V  I++G++    D I   
Sbjct: 123 VLQADGGTRTASITGAWIALQRAIAVGRDSGFIPGNPTRDSVCAISVGII----DSIPRL 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED     D  V  T SG +  +Q   +    S   +   L  A+ G   +     
Sbjct: 179 DLPYEEDSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQR 238

Query: 537 KVLSESRLQLGEFT 550
             +  +   +   T
Sbjct: 239 AAVDSAPGAVLTLT 252



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 23/217 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G VL + G T VL +      +   +    F  +T  Y     A           + + +
Sbjct: 31  GCVLVSCGNTRVLCSASLTEGVPRWRKDSGFGWVTAEYAMLPRAT-DTRNTRESVKGKIS 89

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I R++R          N   +  +V+Q D        S+  A  AL     
Sbjct: 90  GRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQADGG--TRTASITGAWIALQRAIA 147

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-LMV 188
                  + G P    V    V  I+    L+   +ED   +  +++ ++G+   V +  
Sbjct: 148 VGRDSGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEEDSRAETDMNVVMTGSGSLVEVQG 207

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
             E    S   +   +      C+ +           
Sbjct: 208 TAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDSA 244


>gi|159036643|ref|YP_001535896.1| ribonuclease PH [Salinispora arenicola CNS-205]
 gi|189043771|sp|A8M4I1|RNPH_SALAI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157915478|gb|ABV96905.1| ribonuclease PH [Salinispora arenicola CNS-205]
          Length = 241

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 19/243 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G      GS L   G T+ +   ++     E       G+   
Sbjct: 3   RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVT----EGVPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    ++ +  +
Sbjct: 59  WVTAEYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD--AGVPISKPVAG--------IAMGLVKDGDDFIILSD 478
           + ++DG +  A + G+ +AL D    +   + +AG            +           D
Sbjct: 119 VLQADGGTRTAAITGAYVALYDAVTWLAARRSLAGRPENVMHRSVAAVSVGVVAGEPRLD 178

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           ++ DED    +D  V  T +G    +Q   + G  S   +   L  A  G L +     K
Sbjct: 179 LNYDEDATAEVDLNVVCTGTGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCLDLAEAQRK 238

Query: 538 VLS 540
            LS
Sbjct: 239 ALS 241



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 70/220 (31%), Gaps = 34/220 (15%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL T      +   + G     +T  Y     A          +  R  
Sbjct: 27  GSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTAEYAMLPRATNTRSDRESVK-GRVG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLSGL 143
                ISR+I RS+R         E  V+   +V+Q D        ++  A  AL  +  
Sbjct: 86  GRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQADGG--TRTAAITGAYVALYDA-- 141

Query: 144 PFEGPVVGAQ--VDYING----------------QYVLNPRLDED---QGSLDLFVSGTQ 182
                +   +                        +  L+   DED   +  L++  +GT 
Sbjct: 142 --VTWLAARRSLAGRPENVMHRSVAAVSVGVVAGEPRLDLNYDEDATAEVDLNVVCTGTG 199

Query: 183 DAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           D V +    EA   S   +   +      C  + EA  K 
Sbjct: 200 DFVEVQGTGEAGVFSRGQLDALLDLAVAGCLDLAEAQRKA 239


>gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708]
 gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708]
          Length = 246

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+S  +R +S      +   GS L   GDTQ +  V++     +     L+GT + 
Sbjct: 5   RPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSV----SDSVPKFLNGTGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   L        TL I +++ 
Sbjct: 61  WLTAEYRMLPSATQKRQERELLKLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-------AGV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + GS +AL          GV    P+ + VA +++GL+          D+
Sbjct: 121 QADAGTRTTAITGSFVALAHAISQMLQQGVLERSPLCRQVAAVSVGLLAGE----AFLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED    +DF V    +  I  +Q   + G  +   +   L  A++G   +L      
Sbjct: 177 NYIEDVAATVDFNVVMNQNLEIIEVQGTAEEGSFNRQQLNKLLDVAEKGIQELLIAQRDA 236



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 25/214 (11%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R + G+VLA  G+T VL TV    S+    +G     LT  Y+    A  K      R  
Sbjct: 25  RFASGSVLAKCGDTQVLCTVSVSDSVPKFLNGTGKGWLTAEYRMLPSATQK---RQEREL 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESSPHVVSMVAASAAL- 138
            + +     I R+I RS+R         E  +II  +V+Q D        ++  +  AL 
Sbjct: 82  LKLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVLQADAG--TRTTAITGSFVALA 139

Query: 139 -MLSGL---------PFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD-AVL 186
             +S +         P    V    V  + G+  L+    ++   ++D  V   Q+  ++
Sbjct: 140 HAISQMLQQGVLERSPLCRQVAAVSVGLLAGEAFLDLNYIEDVAATVDFNVVMNQNLEII 199

Query: 187 MVELEANQLS--EDVVLDAIIFGHNECKPVIEAI 218
            V+  A + S     +   +       + ++ A 
Sbjct: 200 EVQGTAEEGSFNRQQLNKLLDVAEKGIQELLIAQ 233


>gi|254479649|ref|ZP_05092951.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
 gi|214034420|gb|EEB75192.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
          Length = 229

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 24/220 (10%)

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRRE 398
            G+T+ I   ++    +++      GT +      Y  LP AT   +      G PS R 
Sbjct: 1   MGETKVICTASI----EDKVPPFQKGTGKGWITSEYGMLPRATEVRNPREVTKGRPSGRT 56

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD-------- 450
           +   RL  R++  V+   A    T+ I  ++ ++DG +  A++ GS +AL D        
Sbjct: 57  MEIQRLIGRSLRAVVDLEALGERTIWIDCDVIQADGGTRTASITGSFIALADALNKLVEK 116

Query: 451 ---AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMD 506
                +P+   VA +++G+V    +   L D+S  ED    +D  V  TD G I  +Q  
Sbjct: 117 GELQKIPLKSFVAAVSVGIV----EGNKLLDLSFQEDANALVDMNVVMTDKGEIVEIQGT 172

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            + G  S       L  A  G   I+    +VLS+   ++
Sbjct: 173 GEGGPFSRQNFEELLDLAAHGIEQIIKIQKEVLSDIADKI 212



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 27/224 (12%)

Query: 35  YGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
            GET V+ T   +  +   Q       +T  Y     A  ++       + RP+   + I
Sbjct: 1   MGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRAT-EVRNPREVTKGRPSGRTMEI 59

Query: 92  SRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM---------- 139
            R+I RS+R +       E    +  +V+Q D        S+  +  AL           
Sbjct: 60  QRLIGRSLRAVVDLEALGERTIWIDCDVIQADGG--TRTASITGSFIALADALNKLVEKG 117

Query: 140 -LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVSGT-QDAVLMVE--LEANQ 194
            L  +P +  V    V  + G  +L+    ED  +L D+ V  T +  ++ ++   E   
Sbjct: 118 ELQKIPLKSFVAAVSVGIVEGNKLLDLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGP 177

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISK----LAKMCAKEPIVIDS 234
            S     + +    +  + +I+   +    +A     E + +DS
Sbjct: 178 FSRQNFEELLDLAAHGIEQIIKIQKEVLSDIADKIGVENVEVDS 221


>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 245

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 13/240 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++ +  +R DGR  +  R I  + G L+   GS+    GD + +V V  G R+   +   
Sbjct: 10  LLDENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGV-FGPRDV--HPKH 66

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +S T      + Y+  P +  E     APSRREI   ++ + A+ P +         + +
Sbjct: 67  MSNTDTGILRVRYHMEPFSVTERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVDV 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             E+ ++DG +  A +  +S+AL DAG+P+   VA  A G   D     I+ D++ +ED 
Sbjct: 126 FIEVLQADGGTRCAALSAASVALADAGIPMRDMVAACAAGKAADT----IILDVNNEEDQ 181

Query: 486 LGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            G  D  +    S   IT +Q+D     ++       ++    G   +     K L++  
Sbjct: 182 AGQADMPIGYMPSLEKITLLQLDGV---LTPAEYKKCVETGIHGCKIVYELQKKALTDKY 238



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 19/217 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R + ++ G + + +DG+    +G+  +L  V   R +        D   L V Y    ++
Sbjct: 27  RRIMIKAGGL-KNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGILRVRYHMEPFS 85

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           V +      R+   P+  EI IS++I  ++ P  +  K  +    V I V+Q D      
Sbjct: 86  VTE------RKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGG--TR 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
             ++ AAS AL  +G+P    V            +L+   +ED   Q  + +    + + 
Sbjct: 138 CAALSAASVALADAGIPMRDMVAACAAGKAADTIILDVNNEEDQAGQADMPIGYMPSLEK 197

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + +++L+   L+       +  G + CK V E   K 
Sbjct: 198 ITLLQLDG-VLTPAEYKKCVETGIHGCKIVYELQKKA 233


>gi|255522701|ref|ZP_05389938.1| ribonuclease PH [Listeria monocytogenes FSL J1-175]
          Length = 229

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 23/227 (10%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV-- 388
            L    GS L   G+T+ I   ++ T+        + G  R      Y+ LP AT     
Sbjct: 1   YLMHPEGSVLIASGNTKVICSASVETK----VPPFMRGEGRGWISAEYSMLPRATNTRNI 56

Query: 389 --SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
             S  G  + R +   RL  RA+  V+   A    T+ +  ++ ++DG +  A++ G+ +
Sbjct: 57  RESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFI 116

Query: 447 AL------MDAGV-----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
           A+      +D  V     P+   +A  ++G++++G     + D++  ED    +D  +  
Sbjct: 117 AMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGG---TVLDLNYVEDSAAQVDMNIIM 173

Query: 496 TDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           T SG    +Q   +    SE  +   +   K+G   ++    + L +
Sbjct: 174 TGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGD 220



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ +   +  +     G+    ++  Y     A           + + T
Sbjct: 7   GSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATN-TRNIRESSKGKVT 65

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-- 141
              + I R+I R++R +       E  +    +V+Q D        S+  A  A++++  
Sbjct: 66  GRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG--TRTASITGAFIAMVMAIA 123

Query: 142 ----GLPFEG-PV----VGAQVD-YINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMV 188
                +PF   PV        V     G  VL+    ED      +++ ++G+  A + +
Sbjct: 124 KLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGS-GAFVEL 182

Query: 189 ELEANQLS--EDVVLDAIIFGHNECKPVIEAISK 220
           +    + +  E  + + I  G      +IE   +
Sbjct: 183 QGTGEEATFSETELAELIALGKKGISELIEIQKE 216


>gi|61216057|sp|Q8DLA4|RNPH_THEEB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 242

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R    Q    Q   GS L   G TQ +  V+      E     L GT + 
Sbjct: 5   RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSF----KEGVPKFLEGTGQG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT           S R     RL  R++   +  +     TL + +++ 
Sbjct: 61  WLTAEYRMLPSATRPRQEREFLKLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + G  +AL+D              P+   VA +++GL+ D        D+
Sbjct: 121 QADAGTRSLAITGGYIALVDALSALLQQGVLRKSPLRHQVAAVSVGLIDDEP----YLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           S  ED    +DF V  T SG    +Q   ++G      +   L  A++G   ++    +V
Sbjct: 177 SYAEDVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRV 236



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 31/223 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + + G+VLA  G+T VL TV +   +    +G     LT  Y+    A         R  
Sbjct: 25  QFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTAEYRMLPSA---TRPRQEREF 81

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL- 138
            + +     I R+I RS+R         E  +I   +V+Q D       +++     AL 
Sbjct: 82  LKLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQADAG--TRSLAITGGYIALV 139

Query: 139 -MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
             LS L         P    V    V  I+ +  L+    ED       ++ ++G+   +
Sbjct: 140 DALSALLQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAEDVAASVDFNVVMTGSGQFI 199

Query: 186 ----LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
                      ++ + D +LD         + +IE   ++   
Sbjct: 200 EVQGTAEMGSFDRGTLDRLLD---VARQGIQELIEIQQRVLAP 239


>gi|296129173|ref|YP_003636423.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
 gi|296020988|gb|ADG74224.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
          Length = 257

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R ++     L    GS L   G T+ + V +      E       G+  
Sbjct: 1   MRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFT----EGVPRWRKGSGE 56

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   S      G    R     RL  R++  V+   A    T+ +  
Sbjct: 57  GWVTAEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDC 116

Query: 428 EITESDGSSSMATVCGSSLALMDAGV---------P----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A + G+ +AL DA           P    +   VA I++G+V    D +
Sbjct: 117 DVLQADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVV----DGV 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQA 524
            + D+  +ED     D  V  T +G    +Q   +        +   L  A
Sbjct: 173 PVLDLPYEEDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLA 223



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL    +   +   + G     +T  Y     A          R  +  
Sbjct: 26  GSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVTAEYAMLPRATNSRSDRESVR-GKVG 84

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLSGL 143
                ISR++ RS+R +       E  ++   +V+Q D        ++  A  AL  +  
Sbjct: 85  GRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQADGG--TRTAAITGAYVALADAVA 142

Query: 144 ---------P----FEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
                    P        V    V  ++G  VL+   +ED   +  +++  +G   A + 
Sbjct: 143 WATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYEEDVRAETDMNVVTTG-AGAFVE 201

Query: 188 VELEANQLS 196
           V+  A    
Sbjct: 202 VQGTAEHAP 210


>gi|22298135|ref|NP_681382.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
 gi|22294313|dbj|BAC08144.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
          Length = 249

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R    Q    Q   GS L   G TQ +  V+      E     L GT + 
Sbjct: 12  RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSF----KEGVPKFLEGTGQG 67

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT           S R     RL  R++   +  +     TL + +++ 
Sbjct: 68  WLTAEYRMLPSATRPRQEREFLKLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVL 127

Query: 431 ESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +    + G  +AL+D              P+   VA +++GL+ D        D+
Sbjct: 128 QADAGTRSLAITGGYIALVDALSALLQQGVLRKSPLRHQVAAVSVGLIDDEP----YLDL 183

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           S  ED    +DF V  T SG    +Q   ++G      +   L  A++G   ++    +V
Sbjct: 184 SYAEDVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRV 243



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 31/223 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + + G+VLA  G+T VL TV +   +    +G     LT  Y+    A         R  
Sbjct: 32  QFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTAEYRMLPSA---TRPRQEREF 88

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL- 138
            + +     I R+I RS+R         E  +I   +V+Q D       +++     AL 
Sbjct: 89  LKLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQADAG--TRSLAITGGYIALV 146

Query: 139 -MLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
             LS L         P    V    V  I+ +  L+    ED       ++ ++G+   +
Sbjct: 147 DALSALLQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAEDVAASVDFNVVMTGSGQFI 206

Query: 186 ----LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
                      ++ + D +LD         + +IE   ++   
Sbjct: 207 EVQGTAEMGSFDRGTLDRLLD---VARQGIQELIEIQQRVLAP 246


>gi|183601855|ref|ZP_02963224.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682769|ref|YP_002469152.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
 gi|183218740|gb|EDT89382.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620419|gb|ACL28576.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
 gi|289178068|gb|ADC85314.1| Ribonuclease PH [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 246

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R +           GS L   G+T+ +   T               +   
Sbjct: 5   RADGRAYDELRPVRITRAFTDVPEGSVLIECGNTRVMCTATFTDT----VPRWRKDSGLG 60

Query: 373 DFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT +     S  G    R     RL  R +  V+   A    T+++  +
Sbjct: 61  WVTAEYSMLPRATAQRTDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCD 120

Query: 429 ITESDGSSSMATVCGSSLALMD------AGVPIS-------KPVAGIAMGLVKDGDDFII 475
           + ++DG +  A++ G+ +AL+D          I          V+ +++G++    D   
Sbjct: 121 VLQADGGTRTASITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVI----DGEP 176

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
           + D+   ED     D  VA T SG    +Q   +    S N + + L  A +G
Sbjct: 177 MLDLPYVEDSRAMTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLATKG 229



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 23/186 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +  ++   +       +T  Y     A  +       R  +  
Sbjct: 29  GSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQRTDRESVR-GKVG 87

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL--MLS 141
                ISR+I R +R +        N  Q+  +V+Q D        S+  A  AL   L+
Sbjct: 88  GRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGG--TRTASITGAHVALVDALN 145

Query: 142 GLPFEG-----------PVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGT-QDAVLMV 188
                G            V    V  I+G+ +L+ P +++ +   D+ V+ T     + +
Sbjct: 146 WAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVEDSRAMTDMNVAMTGSGKFVEI 205

Query: 189 ELEANQ 194
           +  A  
Sbjct: 206 QGTAEH 211


>gi|315656450|ref|ZP_07909339.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493009|gb|EFU82611.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 259

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 94/254 (37%), Gaps = 24/254 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R+++  +  +    G  L   G+T+ +   +L     E        +   
Sbjct: 9   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLT----EGVPRWRKDSGLG 64

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R     RL  RA+   +   A    T+ I  +
Sbjct: 65  WVTAEYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCD 124

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL  A           G P    V  I++G++    D I   
Sbjct: 125 VLQADGGTRTASITGAWIALQCAIAVGRDSGFIPGNPTRDSVCAISVGII----DSIPRL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED     D  V  T SG +  +Q   +    S   +   L  A+ G   +     
Sbjct: 181 DLPYEEDSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQR 240

Query: 537 KVLSESRLQLGEFT 550
             +  +   +   T
Sbjct: 241 AAVDSAPGAVLTLT 254



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 23/217 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G VL + G T VL +      +   +       +T  Y     A           + + +
Sbjct: 33  GCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTAEYAMLPRAT-DTRNTRESVKGKIS 91

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR+I R++R          N   +  +V+Q D        S+  A  AL  +  
Sbjct: 92  GRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQADGG--TRTASITGAWIALQCAIA 149

Query: 142 ---------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-LMV 188
                    G P    V    V  I+    L+   +ED   +  +++ ++G+   V +  
Sbjct: 150 VGRDSGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEEDSRAETDMNVVMTGSGSLVEVQG 209

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
             E    S   +   +      C+ +           
Sbjct: 210 TAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDSA 246


>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
          Length = 274

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 97/249 (38%), Gaps = 16/249 (6%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
               +R DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G  + +  +    
Sbjct: 9   SQGGLRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAV-YGPHQPKSNIS--R 65

Query: 368 GTQRNDFMMHYNFLPCAT--GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            + +      Y+    +   GE  R      +        R A+  ++         + I
Sbjct: 66  NSTKAFVNCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDI 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK------DGDDFII--LS 477
             E+ + DGS   A+V  S+LAL+DAG+PI     G  + L+       + D  +   + 
Sbjct: 126 FVEVLQVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLINKLTTEEEEDKTLATGVL 185

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D +  E+    +   V       T  ++++   G+   +   A Q+    RL  L + + 
Sbjct: 186 DANFVEECSPGVTLSVVALPE--TNNEVEVDGSGL-IVVAHGAGQRLHLSRLEALKKRAL 242

Query: 538 VLSESRLQL 546
              +   ++
Sbjct: 243 QGCQDIKEI 251



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 25/216 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA 69
           R ++L  G    Q+DG+    +G T VLA V      K           +   Y    ++
Sbjct: 24  RQIRLRMGVFG-QADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFVNCQYSMAVFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
                 G  +R  R        S  +  ++  +       +++  + + V+Q D      
Sbjct: 83  ---FTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVEVLQVDGSDY-- 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-------DLFVSG 180
             S+ A++ AL+ +G+P +   VG  V  IN         +E+  +L       +     
Sbjct: 138 CASVNASTLALIDAGIPIKNYAVGCTVSLINKLT----TEEEEDKTLATGVLDANFVEEC 193

Query: 181 TQDAVLMVELEANQLSEDVVLDA--IIFGHNECKPV 214
           +    L V       +E  V  +  I+  H   + +
Sbjct: 194 SPGVTLSVVALPETNNEVEVDGSGLIVVAHGAGQRL 229


>gi|315655635|ref|ZP_07908533.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315489699|gb|EFU79326.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 257

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 94/254 (37%), Gaps = 24/254 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R+++  +  +    G  L   G+T+ +   +L     E        +   
Sbjct: 7   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLT----EGVPRWRKDSGLG 62

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R     RL  RA+   +   A    T+ I  +
Sbjct: 63  WVTAEYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCD 122

Query: 429 ITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++DG +  A++ G+ +AL  A           G P    V  I++G++    D I   
Sbjct: 123 VLQADGGTRTASITGAWIALQRAIAVGRDSGFIPGNPTRDSVCAISVGII----DSIPRL 178

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+  +ED     D  V  T SG +  +Q   +    S   +   L  A+ G   +     
Sbjct: 179 DLPYEEDSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQR 238

Query: 537 KVLSESRLQLGEFT 550
             +  +   +   T
Sbjct: 239 AAVDSAPGAVLTLT 252



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 23/217 (10%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G VL + G T VL +      +   +       +T  Y     A           + + +
Sbjct: 31  GCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTAEYAMLPRAT-DTRNTRESVKGKIS 89

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I R++R          N   +  +V+Q D        S+  A  AL     
Sbjct: 90  GRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQADGG--TRTASITGAWIALQRAIA 147

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV-LMV 188
                  + G P    V    V  I+    L+   +ED   +  +++ ++G+   V +  
Sbjct: 148 VGRDSGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEEDSRAETDMNVVMTGSGSLVEVQG 207

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
             E    S   +   +      C+ +           
Sbjct: 208 TAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDSA 244


>gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
 gi|306532771|gb|ADN02305.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
          Length = 226

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 21/230 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +S + G+L    GS L   G+T+ +   ++    +E     +           Y  L
Sbjct: 1   MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAASI----EEGVPPFIEQEGEGWLTAEYAML 56

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P +  E  +      R +   R   R++   + +T   PYT+ +  ++ ++DG +  A +
Sbjct: 57  PASVPEGRKRRERDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAAI 116

Query: 442 CGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
            G  +AL           GV      +   VA +++G+V    +  +++D+    D    
Sbjct: 117 SGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMV----EGRLVADLDFAHDLAAQ 172

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +D  V   D  +  +Q + + G  + + +   L  A R    I       
Sbjct: 173 VDMNVVMCDDRLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQRAA 222



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 29/226 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+  E G +A  + G+ L ++G T VL     +  +    +      LT  Y     +V
Sbjct: 2   RPVSFEAGVLAYPA-GSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASV 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
              P G  RRE       + I R I RS+R    +       ++   +V+Q D       
Sbjct: 61  ---PEGRKRRE--RDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGG--TRT 113

Query: 129 VSMVAASAALMLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSL 174
            ++     AL  +                  G V    V  + G+ V +     +    +
Sbjct: 114 AAISGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADLDFAHDLAAQV 173

Query: 175 DLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAI 218
           D+ V    D ++ V+        + D +   +     E + + EA 
Sbjct: 174 DMNVVMCDDRLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQ 219


>gi|87200077|ref|YP_497334.1| ribonuclease PH [Novosphingobium aromaticivorans DSM 12444]
 gi|87135758|gb|ABD26500.1| RNAse PH [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 24/233 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R IS +    +   GS L   GDT+ +V  ++    +E+    L G         Y+ L
Sbjct: 1   MRAISIETAFTKHAEGSVLICFGDTKVLVTASV----EERVPPFLRGKGEGWVTAEYSML 56

Query: 382 PCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT          G  S R     RL  R++  V          + +  ++ ++DG + 
Sbjct: 57  PRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGGTR 116

Query: 438 MATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            A + G+ +A       L+D+G     P+++ VA ++ G+V    +   + D+   ED  
Sbjct: 117 TAAISGAWVALRLAVQKLLDSGAIKEDPLTEKVAAVSCGIV----NGQPVLDLDYIEDSS 172

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              D      + G I   Q   +     E  ++  L+ A+ G   I     K 
Sbjct: 173 ADADANFVLIEGGKIAEAQATAEGATYDEEGLLRLLRLARMGCAEIFAAQEKA 225



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +ET    + ++G+VL  +G+T VL T   +  +     G+    +T  Y     A 
Sbjct: 2   RAISIET-AFTKHAEGSVLICFGDTKVLVTASVEERVPPFLRGKGEGWVTAEYSMLPRAT 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G     + + +     I R+I RS+R +       E Q+    +V+Q D       
Sbjct: 61  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGG--TRT 117

Query: 129 VSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SL 174
            ++  A  AL            +   P    V       +NGQ VL+    ED       
Sbjct: 118 AAISGAWVALRLAVQKLLDSGAIKEDPLTEKVAAVSCGIVNGQPVLDLDYIEDSSADADA 177

Query: 175 DLF-VSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +   + G + A      E     E+ +L  +      C  +  A  K  +
Sbjct: 178 NFVLIEGGKIAEAQATAEGATYDEEGLLRLLRLARMGCAEIFAAQEKAVR 227


>gi|212716722|ref|ZP_03324850.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660426|gb|EEB21001.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
           16992]
          Length = 254

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 14  IRADGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFT----AGVPRWRKDSGL 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G    R     RL  R +  V+   A     ++I  
Sbjct: 70  GWVTAEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL+D             A   I   V+ +++G++    D  
Sbjct: 130 DVLQADGGTRTASITGAYVALVDAMRWAEKHKHIRSADRVIKDSVSAVSVGVI----DGK 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G
Sbjct: 186 PMLDLPYIEDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNTLLDLAEKG 239



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 70/187 (37%), Gaps = 25/187 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +   +   +       +T  Y     A          R  +  
Sbjct: 39  GSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVTAEYAMLPRATADRTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL+    
Sbjct: 98  GRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQADGG--TRTASITGAYVALVDAMR 155

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                     +    +  V    V  I+G+ +L+ P +++ +    +++ ++G+ + +  
Sbjct: 156 WAEKHKHIRSADRVIKDSVSAVSVGVIDGKPMLDLPYIEDSKAMTDMNVAMTGSGEFI-E 214

Query: 188 VELEANQ 194
           ++  A  
Sbjct: 215 IQGTAEH 221


>gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
 gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
          Length = 239

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 25/244 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT-- 369
           +R DGR  + +R I  Q    +   GS L   GDT  +V  ++    DE      +    
Sbjct: 1   MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASI----DETLPPWKAADPA 56

Query: 370 -QRNDFMMHYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            Q+      Y  LP +T    R        R     RL  R++   +      P T+ I 
Sbjct: 57  AQKGWLTAEYCMLPGSTSPRKRREREKVDGRSTEIQRLIGRSLRACVDFETLGPRTIMID 116

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPV-----------AGIAMGLVKDGDDFII 475
            E+ ++DG +    + G  +AL DA   +   V           A +++G+         
Sbjct: 117 VEVLQADGGTRTLGITGGYIALCDAIATLGDKVSKDRPVLTTSIAAVSVGI----SHGTP 172

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+   ED    +D  V  T SG    +Q   +    +   +   L  A++G   ++  
Sbjct: 173 ILDLDYIEDSQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMEL 232

Query: 535 MSKV 538
               
Sbjct: 233 QQAA 236



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 80/237 (33%), Gaps = 37/237 (15%)

Query: 14  RPLKLETGRIARQ----SDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNY 63
           RP++++     RQ    + G+VL + G+T +L T   D +L   +   P      LT  Y
Sbjct: 12  RPIRIQ-----RQFTKVAPGSVLISAGDTTLLVTASIDETLPPWKAADPAAQKGWLTAEY 66

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHD 121
                  G       R   +       I R+I RS+R    F         + + V+Q D
Sbjct: 67  CMLP---GSTSPRKRREREKVDGRSTEIQRLIGRSLRACVDFETLGPRTIMIDVEVLQAD 123

Query: 122 LESSPHVVSMVAASAALMLS----------GLP-FEGPVVGAQVDYINGQYVLNPRL--- 167
                  + +     AL  +            P     +    V   +G  +L+      
Sbjct: 124 GG--TRTLGITGGYIALCDAIATLGDKVSKDRPVLTTSIAAVSVGISHGTPILDLDYIED 181

Query: 168 DEDQGSLDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            + +  L++ ++G+ + + +    E    +   +   +       + ++E      K
Sbjct: 182 SQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMELQQAALK 238


>gi|145593656|ref|YP_001157953.1| ribonuclease PH [Salinispora tropica CNB-440]
 gi|189043773|sp|A4X3X5|RNPH_SALTO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145302993|gb|ABP53575.1| RNAse PH [Salinispora tropica CNB-440]
          Length = 241

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 86/243 (35%), Gaps = 19/243 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  + +R ++   G      GS L   G T+ +   ++     E       G+   
Sbjct: 3   RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVT----EGVPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   S      G    R     RL  R++   +   A    ++ +  +
Sbjct: 59  WVTAEYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSIVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD--AGVPISKPVAG--------IAMGLVKDGDDFIILSD 478
           + ++DG +  A + G+ +AL D    +   + +AG            +           D
Sbjct: 119 VLQADGGTRTAAITGAYVALHDAVTWLAARRSLAGRPETVMHRSVAAVSVGVVAGEPRLD 178

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           ++  ED    +D  V  T +G    +Q   + G  S   +   L  A  G + +     K
Sbjct: 179 LNYAEDASAEVDLNVVCTGAGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCVELAEAQRK 238

Query: 538 VLS 540
            LS
Sbjct: 239 ALS 241



 Score = 44.5 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 72/216 (33%), Gaps = 26/216 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL T      +   + G     +T  Y     A          +  R  
Sbjct: 27  GSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTAEYAMLPRATNTRSDRESVK-GRVG 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL----- 138
                ISR+I RS+R         E  ++   +V+Q D        ++  A  AL     
Sbjct: 86  GRTHEISRLIGRSLRASIDLKALGENSIVLDCDVLQADGG--TRTAAITGAYVALHDAVT 143

Query: 139 ------MLSGLP---FEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV- 185
                  L+G P       V    V  + G+  L+    ED      L++  +G  D V 
Sbjct: 144 WLAARRSLAGRPETVMHRSVAAVSVGVVAGEPRLDLNYAEDASAEVDLNVVCTGAGDFVE 203

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           +    EA   S   +   +      C  + EA  K 
Sbjct: 204 VQGTGEAGVFSRGQLDALLDLAVAGCVELAEAQRKA 239


>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
           mellifera]
          Length = 284

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 19/273 (6%)

Query: 291 IVSVFEDIQAK--VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
           +  V +  + K   V  +     +R+DGR +  +R I  ++G+  +  GS+    G+T+ 
Sbjct: 6   LKVVIKISEKKMIEVENIEDQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKI 65

Query: 349 IVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCA--TGEVSRMGAPSRREIGHGRLA 405
           +V V  G  +       S S   +      Y+    +  +GE  R     R+        
Sbjct: 66  LVTV-YGPHQPRNSTGRSTSKITKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQL 124

Query: 406 RRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           + A+  ++         + I  E  + DGS   A+V  ++LAL+DAG+PI     G  + 
Sbjct: 125 KHAMEAIIHLELYPRSQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVT 184

Query: 466 LVK----DGDDFII---LSDISGDEDHLGHMDFKVAGTD--SGITAMQMDMKIGG----I 512
           L+     + +D  +   + D +  E+    +   V       GI+   + +   G    +
Sbjct: 185 LINCPSLEDEDNTLEKGVLDANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRL 244

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
             +       +   G   I   +   + +   +
Sbjct: 245 HLSQFESLKARVLCGCQDIKTILDHAVRQYLTE 277



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF-------PLTVNYQER 66
           R ++++ G    Q+DG+    +G T +L TV      ++             +   Y   
Sbjct: 40  RQIRIKMGVFG-QADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITKGIVNCQYSMA 98

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
            ++   +  G  +R+ R        S  +  ++  +        +Q+ I V    ++ S 
Sbjct: 99  VFS---LSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQVDGSE 155

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLD 175
           +  S+ AA+ AL+ +G+P +   +G  V  IN      P L+++  +L+
Sbjct: 156 YCASVNAATLALIDAGIPIKNYAIGCTVTLIN-----CPSLEDEDNTLE 199


>gi|308234186|ref|ZP_07664923.1| RNAse PH [Atopobium vaginae DSM 15829]
 gi|328944441|ref|ZP_08241903.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
 gi|327491025|gb|EGF22802.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 25/229 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R  GR +   R  + +  +++   GS L   GDT+ +   T+    ++        +   
Sbjct: 38  RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATV----EDTLPTWRKLSHLG 93

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +    +         R +   RL  R++  V+  +    +T+ I  ++ 
Sbjct: 94  WVSAEYAMLPASAKRRTPREYKGRKGRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVL 153

Query: 431 ESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG +  A++ G+ +AL DA             P++  VA I+MG+V       +L D+
Sbjct: 154 QADGGTRTASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGE----LLVDL 209

Query: 480 SGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQA 524
              ED    +D  V   D G    I        +     N ++ A + A
Sbjct: 210 DYPEDSNADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPA 258



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 26/205 (12%)

Query: 11  WAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERT 67
           +  RP  LE  ++ + +DG+ L T G+T VL +   + +L   +    L   +  Y    
Sbjct: 45  FEARPCTLER-QVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSAEYAMLP 103

Query: 68  YAVG-KIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLES 124
            +   + P  Y  R+ R     + I R+I RS+R +  FSK  ++   +  +V+Q D   
Sbjct: 104 ASAKRRTPREYKGRKGR----SMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQADGG- 158

Query: 125 SPHVVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQG 172
                S+V A  AL            ++  P  G V    +  ++G+ +++    ++   
Sbjct: 159 -TRTASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGELLVDLDYPEDSNA 217

Query: 173 SLDLFVSGTQD-AVLMVELEANQLS 196
            +DL V    D  ++ ++    + +
Sbjct: 218 DVDLNVVMRDDGGLVEIQGTGERAT 242


>gi|269128062|ref|YP_003301432.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
 gi|268313020|gb|ACY99394.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
          Length = 239

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 75/241 (31%), Gaps = 16/241 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R  + +R +  Q   L    GS L   G T+ +   ++              +   
Sbjct: 3   RPDDRAPDQLRPVRIQRNWLDHAEGSVLIEFGATRVLCAASVQDS----VPRWRRDSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT          G    R     RL  R++   +        T+ +  +
Sbjct: 59  WVTAEYAMLPRATHTRGERESVKGRLGGRTQEISRLIGRSLRACVDFKELGENTVVLDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPIS-------KPVAGIAMGLVKDGDDFIILSDISG 481
           + ++DG +  A + G+ +AL DA   +         P+      +     D     D+  
Sbjct: 119 VLQADGGTRTAAITGAYVALADAVAWMRERELIKGDPLICSVAAVSVGVVDGEPRLDLCY 178

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED     D  V  T  G    +Q   +        +   L  A  G   +     + L+
Sbjct: 179 AEDVEAGTDMNVVCTGDGKFVEVQGTAEGQPFDRAELDALLDLAAGGCAELTRLQQEALN 238

Query: 541 E 541
            
Sbjct: 239 R 239



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 27  SDGAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL  +G T VL    V D   +  +D     +T  Y     A     G     + R
Sbjct: 25  AEGSVLIEFGATRVLCAASVQDSVPRWRRDSGLGWVTAEYAMLPRAT-HTRGERESVKGR 83

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM-- 139
                  ISR+I RS+R    F +  +N   +  +V+Q D        ++  A  AL   
Sbjct: 84  LGGRTQEISRLIGRSLRACVDFKELGENTVVLDCDVLQADGG--TRTAAITGAYVALADA 141

Query: 140 ---------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQD-AVLMV 188
                    + G P    V    V  ++G+  L+    ED +   D+ V  T D   + V
Sbjct: 142 VAWMRERELIKGDPLICSVAAVSVGVVDGEPRLDLCYAEDVEAGTDMNVVCTGDGKFVEV 201

Query: 189 ELEANQLSED--VVLDAIIFGHNECKPVIEAISKL 221
           +  A     D   +   +      C  +     + 
Sbjct: 202 QGTAEGQPFDRAELDALLDLAAGGCAELTRLQQEA 236


>gi|282900962|ref|ZP_06308895.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
 gi|281194053|gb|EFA69017.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
          Length = 246

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 22/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  + +R ++      +   GS L   G+TQ +  V++     E     L G+ + 
Sbjct: 5   RLDGRQPDQLRTLNFYPHFTRFAPGSVLAQCGETQVLCTVSIT----EGVPKFLMGSGKG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP AT +         S R     RL  R++   L        TL + +++ 
Sbjct: 61  WLTAEYRMLPSATQQRQERELLKLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVL 120

Query: 431 ESDGSSSMATVCGSSLALMD-------AGV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +   ++ G  +AL          GV    P+   +A +++GL+K         D+
Sbjct: 121 QADAGTRTISITGGFIALAHAITHLLQQGVLERSPLCGQIAAVSVGLLKGE----AFLDL 176

Query: 480 SGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +DF V       I  +Q   + G  S   +   L  A+ G   +L     V
Sbjct: 177 DFTEDVNAEVDFNVVMNSKLNIIEVQGTAEAGSFSRQQLNQLLDVAETGIRELLIAQRSV 236

Query: 539 LSE 541
           + +
Sbjct: 237 IPD 239



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 35/219 (15%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQERTYAVGKIPGGY 77
           R + G+VLA  GET VL TV    S+ +G   F        LT  Y+    A        
Sbjct: 25  RFAPGSVLAQCGETQVLCTV----SITEGVPKFLMGSGKGWLTAEYRMLPSA---TQQRQ 77

Query: 78  LRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAAS 135
            R   + +     I R+I RS+R   +     E    V  +V+Q D       +S+    
Sbjct: 78  ERELLKLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVLQADAG--TRTISITGGF 135

Query: 136 AALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGT 181
            AL            L   P  G +    V  + G+  L+    ED   +   ++ ++ +
Sbjct: 136 IALAHAITHLLQQGVLERSPLCGQIAAVSVGLLKGEAFLDLDFTEDVNAEVDFNVVMN-S 194

Query: 182 QDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAI 218
           +  ++ V+   EA   S   +   +       + ++ A 
Sbjct: 195 KLNIIEVQGTAEAGSFSRQQLNQLLDVAETGIRELLIAQ 233


>gi|283780454|ref|YP_003371209.1| ribonuclease PH [Pirellula staleyi DSM 6068]
 gi|283438907|gb|ADB17349.1| ribonuclease PH [Pirellula staleyi DSM 6068]
          Length = 247

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 27/202 (13%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R I  +    + + GS L   G+T  +   ++    D +  D L+G  +     
Sbjct: 3   RTASELRPIKIKRNYTKMSPGSVLIEAGETVVLCTASV----DAKVPDWLAGKGKGWITA 58

Query: 377 HYNFLPCATGEVSRMGAPS--RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
            YN LP +T    +        R     RL  R++  V+   A     L++  ++ ++DG
Sbjct: 59  EYNMLPHSTRPRKQRERAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADG 118

Query: 435 SSSMATVCGSSLALMD------------AGVPISKP-----VAGIAMGLVKDGDDFIILS 477
            +  A++ G+ +A++D              +PI++P     VA I++G+V+         
Sbjct: 119 GTRTASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPT----L 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG 499
           D+   +D    +D  V  T SG
Sbjct: 175 DLEYVQDVDADVDMNVVMTGSG 196



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 32/211 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+K++     + S G+VL   GETVVL T   D  + D   G+    +T  Y    ++ 
Sbjct: 9   RPIKIKRN-YTKMSPGSVLIEAGETVVLCTASVDAKVPDWLAGKGKGWITAEYNMLPHS- 66

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                   R  ++       I R+I RS+R +       E   QV  +V+Q D       
Sbjct: 67  --TRPRKQRERAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADGG--TRT 122

Query: 129 VSMVAASAALMLS------------GLPFEGP-----VVGAQVDYINGQYVLNPRLDED- 170
            S+  A  A++ +             LP   P     V    V  + G+  L+    +D 
Sbjct: 123 ASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPTLDLEYVQDV 182

Query: 171 --QGSLDLFVSGTQDAVLMVELEANQLSEDV 199
                +++ ++G+    + ++    + + D 
Sbjct: 183 DADVDMNVVMTGS-GKFVEIQGTGEEATFDD 212


>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
          Length = 271

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 23/257 (8%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
               +R+DGR +  +R I  ++G+  +  GS+    G+T+ +  V  G  +    +    
Sbjct: 9   NQGGLRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAV-YGPHQPRNNI--AK 65

Query: 368 GTQRNDFMMHYNFLPCAT--GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            T +      Y+    +   GE  R      +        R A+  ++         + I
Sbjct: 66  NTTKAIVNCQYSMAVFSFTSGERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDI 125

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-----DGDDFII--LSD 478
             EI + DGS   A+V  ++LAL+DAG+PI     G  + L+      + D  +   + D
Sbjct: 126 FVEILQVDGSDYCASVNAATLALIDAGIPIKNYAVGCTVALINTPSTDEQDKTLAGGVLD 185

Query: 479 ISGDEDHLGHMDFKVAGTDSG-----------ITAMQMDMKIGGISENIMVMALQQAKRG 527
            +  E++   +   V                 + A     ++       +     Q  + 
Sbjct: 186 ANFVEEYSPGVTLSVVALPGTSEVESNENGLIVVAHGTGQRLHLSHLEALKQRALQGCKD 245

Query: 528 RLHILNEMSKVLSESRL 544
              I+++  +    + +
Sbjct: 246 IRTIMDQSVRQHLTANI 262



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD----FFPLTVNYQERTYA 69
           R +++  G    Q+DG+    +G T VLA V      ++          +   Y    ++
Sbjct: 24  RQIRIRMGVFG-QADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIVNCQYSMAVFS 82

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
                 G  +R  R        S  +  ++  +       +++  + + ++Q D      
Sbjct: 83  ---FTSGERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVEILQVDGSDY-- 137

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL 174
             S+ AA+ AL+ +G+P +   VG  V  IN      P  DE   +L
Sbjct: 138 CASVNAATLALIDAGIPIKNYAVGCTVALIN-----TPSTDEQDKTL 179


>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|21759394|sp|O42872|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
           Full=Ribosomal RNA-processing protein 41
 gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
           [Schizosaccharomyces pombe]
          Length = 242

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 101/235 (42%), Gaps = 13/235 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R DGR  + +R+   ++G+    +GS+    G+T+ + +V  G  E    + S +  
Sbjct: 10  EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVD-GPSEP--VIKSKARA 66

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLRIVSE 428
            R    +  N    +T +V +     RR I    LA +     ++         + +   
Sbjct: 67  DRTFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQISVYLH 125

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG-DEDHLG 487
           + + DG+   + +  ++LAL+DAG+P+   V     G+V+      +L D++  +E  L 
Sbjct: 126 VLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESD----MLLDLNSLEESALS 181

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            +   V G    +  MQ++  +     + +   +  A  G  HI N M   + +S
Sbjct: 182 WLTVAVLGNIKKVVYMQLETSMH---LDYLESVMNMAIAGSEHIYNTMQSAVRQS 233



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 11/191 (5%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN 87
           +G+     G T VL  V                         +       +++  +    
Sbjct: 36  NGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEI-NIASFSTIDVKKRFKSDRR 94

Query: 88  EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
             L    +  +   +       +++  V ++V+Q D         + A + AL+ +G+P 
Sbjct: 95  IQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGAVMA--SCINATTLALIDAGIPV 152

Query: 146 EGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVLMVELEAN---QLSEDVV 200
           +  V  +    +    +L+    E+     L V+  G    V+ ++LE +      E V+
Sbjct: 153 KDFVCCSTAGIVESDMLLDLNSLEESALSWLTVAVLGNIKKVVYMQLETSMHLDYLESVM 212

Query: 201 LDAIIFGHNEC 211
             AI  G    
Sbjct: 213 NMAIA-GSEHI 222


>gi|15604475|ref|NP_220993.1| ribonuclease PH [Rickettsia prowazekii str. Madrid E]
 gi|6226021|sp|Q9ZCT5|RNPH_RICPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|3861169|emb|CAA15069.1| RIBONUCLEASE PH (rph) [Rickettsia prowazekii]
 gi|292572257|gb|ADE30172.1| Ribonuclease PH [Rickettsia prowazekii Rp22]
          Length = 240

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  +
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNQ 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P +T    +     G    R     RL  RA+  V+         + I  
Sbjct: 57  GWITAEYGMIPGSTSHRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + GS +AL                P+   +A I+ G+ K       +
Sbjct: 117 DVINADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLISQIAAISCGIYKGN----AV 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D       +G +  +Q   +    SE   +  L+ AK G + +    
Sbjct: 173 LDLDYLEDSDAEVDSNFVFACNGNLIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQ 232

Query: 536 SKV 538
           ++V
Sbjct: 233 NQV 235



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 83/229 (36%), Gaps = 26/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ LE   +   ++G+ L   G T V+ +   + ++     GQ+   +T  Y     + 
Sbjct: 12  RPISLELSPLI-NAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWITAEYGMIPGST 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
                  ++RE    +       I R+I R++R + +     E Q+II+    + +    
Sbjct: 71  S----HRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDCDVINADGGTR 126

Query: 128 VVSMVAASAALMLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGS 173
             ++  +  AL L+        +    P    +         G  VL+    ED   +  
Sbjct: 127 TAAITGSYVALHLAIRSLMKKRILKVNPLISQIAAISCGIYKGNAVLDLDYLEDSDAEVD 186

Query: 174 LDLFVSGTQDAV-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +   +   + + +    E    SE+  L  +    +    + +  +++
Sbjct: 187 SNFVFACNGNLIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQNQV 235


>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
 gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
          Length = 264

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R+DGR    +R + A++G+++  +GS++F  G+T+ I  V  G  E       L   
Sbjct: 7   EGLRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAV-YGPHEVHNRSQQL--W 63

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R      Y+    +TG+  R G  +RR      + R+ +   +         + I  ++
Sbjct: 64  DRALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQV 123

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL +AG+P+   VA  A G +    +   L D++  ED  G  
Sbjct: 124 LQADGGTRSACINAAALALAEAGIPMRDLVASCAAGYL----NGTPLLDLNYVEDSGGGP 179

Query: 490 DFKVAGTD--SGITAMQMDMKIG 510
           D  VA       ++ +QMD K+ 
Sbjct: 180 DVTVALFPKVDKVSLLQMDSKMP 202



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R L  E G +   ++G+ +   G T V+A V     + +      D   +   Y    ++
Sbjct: 20  RQLHAELGVV-ENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALVRCEYSMAAFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G                   IS +I +++          ++Q+ I V     +      
Sbjct: 79  TGDRRRKGK-----GNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADGGTRSA 133

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS--GTQDAVL 186
            + AA+ AL  +G+P    V      Y+NG  +L+    ED G   D+ V+     D V 
Sbjct: 134 CINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPDVTVALFPKVDKVS 193

Query: 187 MVELEANQLSE 197
           ++++++    E
Sbjct: 194 LLQMDSKMPLE 204


>gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
          Length = 237

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 25/237 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +    G      GS L   G T+ +   ++     E      +G+        Y  LP +
Sbjct: 1   MRITRGYQDWPAGSVLVEFGRTRVLCAASV----QEGVPRWRAGSGLGWVTAEYAMLPSS 56

Query: 385 TGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           T   S      G    R     RL  R++   +   A    T+ +  ++ ++DG +  A 
Sbjct: 57  TNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGGTRTAA 116

Query: 441 VCGSSLALMDAGV------------PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + G+ +AL DA              P+S  +A +++G+V    D  +  D+  +ED    
Sbjct: 117 ITGAYVALADAITWLSAAGRLTDPKPLSCSIAAVSVGVV----DGRVRLDLPYEEDSRAE 172

Query: 489 MDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           +D  V  TD G +  +Q   +    + + M   +  A  G   +    S+ L+    
Sbjct: 173 VDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALAAPYP 229



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 24/217 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G T VL        +   + G     +T  Y     +           + R  
Sbjct: 13  GSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTN-TRSARESVKGRIG 71

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS-- 141
                ISR++ RS+R         E  +    +V+Q D        ++  A  AL  +  
Sbjct: 72  GRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGG--TRTAAITGAYVALADAIT 129

Query: 142 ----------GLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGTQDAVLMVEL 190
                       P    +    V  ++G+  L+ P  ++ +  +D+ V  T    L+   
Sbjct: 130 WLSAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATDHGTLVEVQ 189

Query: 191 EANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
              +    +   +   I F    C  +    S+    
Sbjct: 190 GTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALAA 226


>gi|213023529|ref|ZP_03337976.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 96

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED- 170
           QVI  V+  + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  
Sbjct: 2   QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 61

Query: 171 QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAII 205
           +  LDL V+GT+ AVLMVE EA  LSED +L A++
Sbjct: 62  ESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVV 96



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 423 LRIVSEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +++++ +   +   +  +  + G+S AL  +G+P + P+    +G + D      + + +
Sbjct: 1   MQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPT 56

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
            DE     +D  VAGT++ +  ++ + ++  +SE+ M+ A+
Sbjct: 57  QDELKESKLDLVVAGTEAAVLMVESEAEL--LSEDTMLGAV 95


>gi|155183643|gb|ABT17081.1| polynucleotide phosphorylase [Dichelobacter nodosus]
          Length = 133

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 60/131 (45%), Positives = 86/131 (65%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             ++I++VIG GG  IR I EQTG  + I+DDG+VKIA++  A    AR +I  I   PE
Sbjct: 1   DTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATDKAAAANARRLIEEIVAEPE 60

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +IY  +V K+ DFGAF+ F   ++GLVHISQ++  RV    D + EG  V VKLL+ D
Sbjct: 61  IGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDELTEGQEVKVKLLEID 120

Query: 679 DRGKIKLSMKV 689
            +G+++LS+K 
Sbjct: 121 RQGRVRLSIKE 131


>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
          Length = 248

 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           + +  + +R+DGR +  +R ++ ++G+  R  GS+ + +G+T+ I V   G RE      
Sbjct: 5   SYITPEGLRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTK-ITVAVYGPREVASNQR 63

Query: 365 SLSGTQRNDFMMHYNFLPCATG-EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            L    R      Y+    ++  +        ++      L ++A    +  T      +
Sbjct: 64  MLH--DRAIVNCEYSQAAFSSATDRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  ++ ++DG    A +  ++LA++DAG+P+   +   +   +    + + L D++  E
Sbjct: 122 DIYVQVLQADGGLKAAALNAATLAVIDAGLPMRDFICACSATFI----EGVPLLDMNQME 177

Query: 484 DHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +  G  D  ++      G+ ++ M+ K   + +++    L+ A  G + I   +   +  
Sbjct: 178 ERSGGADLLLSIQPQLGGVISLNMESK---VPQDMFESVLELANLGCMKIFALLQTEVKR 234

Query: 542 SRLQL 546
               L
Sbjct: 235 HSADL 239



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 85/220 (38%), Gaps = 19/220 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R L ++ G   R +DG+     G T +   V   R +   Q    D   +   Y +  ++
Sbjct: 23  RRLNMKMGIFNR-ADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIVNCEYSQAAFS 81

Query: 70  VGKIPGGYLRRESRPTEN-EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSP 126
                    R+ +R ++     I+ +I ++           +++  + + V+Q D     
Sbjct: 82  SAT-----DRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVLQADGGLK- 135

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQD 183
              ++ AA+ A++ +GLP    +      +I G  +L+    E++     L L +     
Sbjct: 136 -AAALNAATLAVIDAGLPMRDFICACSATFIEGVPLLDMNQMEERSGGADLLLSIQPQLG 194

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
            V+ + +E+  + +D+    +   +  C  +   +    K
Sbjct: 195 GVISLNMESK-VPQDMFESVLELANLGCMKIFALLQTEVK 233


>gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1]
 gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1]
          Length = 255

 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 25/215 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR++  +R ++ + G   +  GS+L   G T+ +   +            ++G  + 
Sbjct: 3   RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNG----VPRWMAGKGKG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP +T          G    R     RL  R++  V+   A    T+ I  +
Sbjct: 59  WVTAEYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA---GVPIS----------KPVAGIAMGLVKDGDDFII 475
           + ++DG +  A + G+ +AL DA   G                +A +++G++    D   
Sbjct: 119 VLQADGGTRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGII----DGEP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           + D++  ED     D  V  T  G+         G
Sbjct: 175 MLDLAYVEDVRAETDMNVVVTGRGLFVEVQGTAEG 209



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 31/192 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R + +E G  + Q++G+ L ++G+T VL T  +   +     G+    +T  Y     + 
Sbjct: 13  RKVTIERGW-SDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGKGWVTAEYSMLPRST 71

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESS 125
                  + RE    +       ISR+I RS+R +       E  ++   +V+Q D    
Sbjct: 72  N----SRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQADGG-- 125

Query: 126 PHVVSMVAASAALMLS-----GLPFEG--------PVVGAQVDYINGQYVLNPRLDED-- 170
               ++  A  AL  +        F G         +    V  I+G+ +L+    ED  
Sbjct: 126 TRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLDLAYVEDVR 185

Query: 171 -QGSLDLFVSGT 181
            +  +++ V+G 
Sbjct: 186 AETDMNVVVTGR 197


>gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
 gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
          Length = 250

 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 16/214 (7%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K R DGR ++ +R ++   G L    GS L   G T+ +   ++     E       G+ 
Sbjct: 7   KPRPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVT----EGVPRWRKGSG 62

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP AT          G    R     RL  R++   +   A    ++ I 
Sbjct: 63  LGWVTAEYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAID 122

Query: 427 SEITESDGSSSMATVCGSSLALMD------AGVPISKPVAGI--AMGLVKDGDDFIILSD 478
            ++ ++DG +  A + G+ +AL D          +++P A +     +     D     D
Sbjct: 123 CDVLQADGGTRTAAITGAYVALADAVGWLGERRKLARPRAVLQSVAAVSVGVVDGQPRLD 182

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           ++ +ED     D  V  T  G           G+
Sbjct: 183 LAYEEDVRAGTDMNVVCTGDGSFVEVQGTAENGV 216



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ +  G +   ++G+VL  +G T VL        +   + G     +T  Y     A 
Sbjct: 19  RPVTITRGWL-DHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPRAT 77

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHV 128
               G     + R       ISR+I RS+R          N   +  +V+Q D       
Sbjct: 78  -HTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQADGG--TRT 134

Query: 129 VSMVAASAALM 139
            ++  A  AL 
Sbjct: 135 AAITGAYVALA 145


>gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
 gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
          Length = 238

 Score =  133 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 31/248 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+DGR ++ +R+I  ++G ++ + GS+L   G T+ I  V           D L G + 
Sbjct: 1   MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTV--------NIKDGLPGWKS 52

Query: 372 ----NDFMMHYNFLPCATGEVSRMGAP-SRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                     Y  LP AT   S+  A    R     RL  R +   +        T++I 
Sbjct: 53  SGSGGWLTAEYRMLPGATHTRSKREAGVGGRSSEIQRLIGRTLRAAVDLDKLGDRTIQID 112

Query: 427 SEITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDFI 474
            ++  +DG +  A++ G+ LALM+            +G+ I  P++ I++G+V       
Sbjct: 113 CDVLNADGGTRCASINGAMLALMNALKKMEEQGVDISGI-IKTPLSAISVGVV----KGQ 167

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            L D+   ED    +D  V  T  G    +Q   +    S   +   L   ++G   I  
Sbjct: 168 ALLDLCYKEDSAADVDMNVIMTAKGDFVEVQGTGEEAVFSRQELNELLDAGEKGTKEISA 227

Query: 534 EMSKVLSE 541
           E++K+  E
Sbjct: 228 ELAKIYPE 235



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 31/230 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +K E G + + S G+ L+  G T V+ TV     L   K       LT  Y+    A 
Sbjct: 12  REIKFELGFV-KNSLGSALSACGLTEVICTVNIKDGLPGWKSSGSGGWLTAEYRMLPGAT 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
                   +RE+        I R+I R++R         +   Q+  +V+  D       
Sbjct: 71  ----HTRSKREAGVGGRSSEIQRLIGRTLRAAVDLDKLGDRTIQIDCDVLNADGG--TRC 124

Query: 129 VSMVAASAALM------------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---S 173
            S+  A  ALM            +SG+  + P+    V  + GQ +L+    ED      
Sbjct: 125 ASINGAMLALMNALKKMEEQGVDISGI-IKTPLSAISVGVVKGQALLDLCYKEDSAADVD 183

Query: 174 LDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +++ ++   D V  V+    +   S   + + +  G    K +   ++K+
Sbjct: 184 MNVIMTAKGDFV-EVQGTGEEAVFSRQELNELLDAGEKGTKEISAELAKI 232


>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 208

 Score =  133 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 13/213 (6%)

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
             GS+    G  + I  V  G  E   Y   +    R      Y+  P +  E  R G P
Sbjct: 1   ADGSAFIEWGGNKIIAAV-YGPHEA--YPKHVQEADRAIVRARYSMAPFSVDERKRPG-P 56

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
            RR I   ++   A+  V+        ++ +  E+ ++D  + +A +  +SLAL DAG+P
Sbjct: 57  DRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIP 116

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD--SGITAMQMDMKIGGI 512
           +   + G A G + D    +++ D++ +ED+ G  D  +A       I  +QMD   G +
Sbjct: 117 MRDLIVGCAAGKIDD----VVVLDLNKEEDNFGQADVPMAIMPRTKEIALLQMD---GDM 169

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           S   +  A+  A      I     + L    ++
Sbjct: 170 SYEELTTAMDMAMDAAEKIHEMQVEALKRKYIE 202



 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 84/217 (38%), Gaps = 18/217 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+    +G   ++A V              D   +   Y    ++V +      R+  
Sbjct: 1   ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDE------RKRP 54

Query: 83  RPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
            P    I +S++I  ++  +    K  +    V I V+Q D      V  +  AS AL  
Sbjct: 55  GPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAG--TRVAGITVASLALAD 112

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSE 197
           +G+P    +VG     I+   VL+   +ED   Q  + + +      + +++++ + +S 
Sbjct: 113 AGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKEIALLQMDGD-MSY 171

Query: 198 DVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           + +  A+    +  + + E   +  K    E +  + 
Sbjct: 172 EELTTAMDMAMDAAEKIHEMQVEALKRKYIEEVDENE 208


>gi|154486637|ref|ZP_02028044.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
           L2-32]
 gi|154084500|gb|EDN83545.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
           L2-32]
          Length = 254

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR  + +R +           GS L   G+T+ +   T               +  
Sbjct: 14  VRADGRKVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFT----AGVPRWRKDSGL 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G    R     RL  R +  V+   A     ++I  
Sbjct: 70  GWVTAEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL+D             A   +   V+ +++G++    +  
Sbjct: 130 DVLQADGGTRTASITGAYVALVDAMHWAEEHKHVKSADRVLKDWVSAVSVGVI----NGK 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            + D+   ED     D  VA T SG    +Q   +    +   +   L  A++G
Sbjct: 186 PMLDLPYIEDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKG 239



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 25/187 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +   +   +       +T  Y     A          R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVTAEYAMLPRATADRTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL+    
Sbjct: 98  GRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQADGG--TRTASITGAYVALVDAMH 155

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                     +    +  V    V  ING+ +L+ P +++ Q    +++ ++G+ D +  
Sbjct: 156 WAEEHKHVKSADRVLKDWVSAVSVGVINGKPMLDLPYIEDSQAMTDMNVAMTGSGDFI-E 214

Query: 188 VELEANQ 194
           ++  A  
Sbjct: 215 IQGTAEH 221


>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
 gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
          Length = 242

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 12/243 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R+DGR    +R + A++G+++  +GS++F  G+T+ I  V  G  E       L   
Sbjct: 7   EGLRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAV-YGPHEVHNRSQQL--W 63

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R      Y+    +TG+  R G  +RR      + R+ +   +         + I  ++
Sbjct: 64  DRALVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQV 123

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A +  ++LAL +AG+P+   VA  A G +    +   L D++  ED  G  
Sbjct: 124 LQADGGTRSACINAAALALAEAGIPMRDLVASCAAGYL----NGTPLLDLNYVEDSGGGP 179

Query: 490 DFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           D  VA       ++ +QMD K   +         Q A  G       M +VL E+   L 
Sbjct: 180 DVTVALFPKVDKVSLLQMDSK---LPLEHFENVFQLAAEGAKAAARYMREVLMENTQNLA 236

Query: 548 EFT 550
              
Sbjct: 237 RLV 239



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYA 69
           R L  E G +   ++G+ +   G T V+A V     + +      D   +   Y    ++
Sbjct: 20  RQLHAELGVV-ENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALVRCEYSMAAFS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
            G                   IS +I +++          ++Q+ I V     +      
Sbjct: 79  TGDRRRKGK-----GNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADGGTRSA 133

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS--GTQDAVL 186
            + AA+ AL  +G+P    V      Y+NG  +L+    ED G   D+ V+     D V 
Sbjct: 134 CINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPDVTVALFPKVDKVS 193

Query: 187 MVELEANQLSE 197
           ++++++    E
Sbjct: 194 LLQMDSKLPLE 204


>gi|302338872|ref|YP_003804078.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
 gi|301636057|gb|ADK81484.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
          Length = 236

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 24/233 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +RD+  Q   L    GS L   GDT+ I  V+L    +++    L G         Y  L
Sbjct: 1   MRDVQFQTSYLIHPAGSCLASYGDTKVICTVSL----EDRVPSFLEGRGCGWLTAEYGML 56

Query: 382 PCATG---EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
           P +TG   +   +G    R     RL  R++   +        TL +  ++ ++DG +  
Sbjct: 57  PGSTGGGRKQREIGKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQADGGTRT 116

Query: 439 ATVCGSSLALMD-------------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           A+V G  +AL +             A   +   +A +++G+V    D  ++ D+    D 
Sbjct: 117 ASVSGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIV----DGQVVCDLDYAHDS 172

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              +D  +   +     +Q   + G  S   +   +  A  G   I  +    
Sbjct: 173 RAEVDMNIVKLEEAFVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDA 225



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 24/230 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R ++ +T  +   + G+ LA+YG+T V+ TV  +  +    +G+    LT  Y       
Sbjct: 2   RDVQFQTSYLIHPA-GSCLASYGDTKVICTVSLEDRVPSFLEGRGCGWLTAEYGMLP--- 57

Query: 71  GKIPGGYLRRE-SRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDL----- 122
           G   GG  +RE  +       I R+I RS+R      K  +    V  +V+Q D      
Sbjct: 58  GSTGGGRKQREIGKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQADGGTRTA 117

Query: 123 ESSPHVVSMVAASAALML------SGLPFEGPVVGAQVDYINGQYVLNPRLD-EDQGSLD 175
             S   V++  A +AL        +    +G +    V  ++GQ V +     + +  +D
Sbjct: 118 SVSGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIVDGQVVCDLDYAHDSRAEVD 177

Query: 176 LFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           + +   ++A + ++    +   S + +   I         + +      K
Sbjct: 178 MNIVKLEEAFVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDALK 227


>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 242

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 100/235 (42%), Gaps = 13/235 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R DGR  + +R+   + G+    +GS+    G+T+ + +V  G  E    + S +  
Sbjct: 10  EGLRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVD-GPSEP--VIKSKARA 66

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLRIVSE 428
            R    +  N    +T +V +     RR I    LA +     ++         + +   
Sbjct: 67  DRTFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQISVYLH 125

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG-DEDHLG 487
           + + DG+   + +  ++LAL+DAG+P+   V     G+V+      +L D++  +E  L 
Sbjct: 126 VLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESD----MLLDLNSLEESALS 181

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            +   V G    +  MQ++  +     + +   +  A  G  HI N M   + +S
Sbjct: 182 WLTVAVLGNIKKVVYMQLETSMH---LDYLESVMNMAIAGSEHIYNTMQSAVRQS 233



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 11/191 (5%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN 87
           +G+     G T VL  V                         +       +++  +    
Sbjct: 36  NGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEI-NIASFSTIDVKKRFKSDRR 94

Query: 88  EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
             L    +  +   +       +++  V ++V+Q D         + A + AL+ +G+P 
Sbjct: 95  IQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGAVMA--SCINATTLALIDAGIPV 152

Query: 146 EGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVLMVELEAN---QLSEDVV 200
           +  V  +    +    +L+    E+     L V+  G    V+ ++LE +      E V+
Sbjct: 153 KDFVCCSTAGIVESDMLLDLNSLEESALSWLTVAVLGNIKKVVYMQLETSMHLDYLESVM 212

Query: 201 LDAIIFGHNEC 211
             AI  G    
Sbjct: 213 NMAIA-GSEHI 222


>gi|108758625|ref|YP_630239.1| ribonuclease PH [Myxococcus xanthus DK 1622]
 gi|122389586|sp|Q1DAT4|RNPH_MYXXD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|108462505|gb|ABF87690.1| ribonuclease PH [Myxococcus xanthus DK 1622]
          Length = 237

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 24/227 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R +  +R +    G+ +   GS     G T+ +V  +     +E+    L G   
Sbjct: 1   MRSFQRGALDLRPVVLTPGVSRYAEGSVQVEFGHTKVLVTCS----TEERVPPHLMGKGS 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT   ++     G  + R +   RL  R++   +  +   P TL +  
Sbjct: 57  GWVTAEYGMLPRATHSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLTLDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++DG +  A++ G+ +AL+            + +P   P+A +++G+VK      + 
Sbjct: 117 DVLQADGGTRTASITGAYVALVLALRSLQKAGTISKLPKLTPLAAVSVGIVKGE----VR 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQ 522
            D+  DED    +D  +  T  G +  +Q   +        +   + 
Sbjct: 173 VDLDYDEDSTADVDLNLVATADGRMVELQGTAEHQLFDRKALDAMVD 219



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+ L  G ++R ++G+V   +G T VL T   +  +           +T  Y     A 
Sbjct: 12  RPVVLTPG-VSRYAEGSVQVEFGHTKVLVTCSTEERVPPHLMGKGSGWVTAEYGMLPRAT 70

Query: 71  GKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSK---CYKNETQVIINVMQHDLES 124
                   +RE    + T   + I R+I RS+R          +  T +  +V+Q D   
Sbjct: 71  ----HSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLT-LDCDVLQADGG- 124

Query: 125 SPHVVSMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-G 172
                S+  A  AL            +S LP   P+    V  + G+  ++   DED   
Sbjct: 125 -TRTASITGAYVALVLALRSLQKAGTISKLPKLTPLAAVSVGIVKGEVRVDLDYDEDSTA 183

Query: 173 SLDLFVSGTQDA-VLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            +DL +  T D  ++ ++  A         +   +  G    + +  A +++
Sbjct: 184 DVDLNLVATADGRMVELQGTAEHQLFDRKALDAMVDGGLAAIQKLTAAQAQV 235


>gi|257063633|ref|YP_003143305.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
 gi|256791286|gb|ACV21956.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
          Length = 240

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 23/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R    +R ++ + G+++   GS L   GDT  +   T+    +E+       +   
Sbjct: 5   RVDNRADRAIRPVTLERGVMKNATGSCLVKFGDTHVLCAATI----EERVPGWRKNSGLG 60

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQ-FPYTLRIVSEI 429
                Y  LP +T + +         R     RL  R++  V    A      + +  ++
Sbjct: 61  WVTAEYAMLPASTSKRTPREYKGRKGRSQEIERLIGRSLRNVCDMGAMGGEVLMTVDCDV 120

Query: 430 TESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A++ G+ +A  DA             P+   VA I++G+V       +L D
Sbjct: 121 LQADGGTRTASITGAWVAAYDAFEMWRKSGKCKRNPLFGQVAAISVGMV----GGRLLLD 176

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +   ED    +D  V     G    +Q   +     +  +   L  A+ G   +L     
Sbjct: 177 LDYREDSKAEIDMNVVMNAKGEFIEIQGTGEQAPFGKATLDDMLSMAQSGIEELLALQRA 236

Query: 538 V 538
            
Sbjct: 237 A 237



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 32/233 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RP+ LE G + + + G+ L  +G+T VL     +  +   +       +T  Y     + 
Sbjct: 15  RPVTLERGVM-KNATGSCLVKFGDTHVLCAATIEERVPGWRKNSGLGWVTAEYAMLPAST 73

Query: 71  G-KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC-YKNET--QVIINVMQHDLESSP 126
             + P  Y  R+ R       I R+I RS+R +        E    V  +V+Q D     
Sbjct: 74  SKRTPREYKGRKGR----SQEIERLIGRSLRNVCDMGAMGGEVLMTVDCDVLQADGG--T 127

Query: 127 HVVSMVAASAALML-------SGL----PFEGPVVGAQVDYINGQYVLNPRLDED-QGSL 174
              S+  A  A          SG     P  G V    V  + G+ +L+    ED +  +
Sbjct: 128 RTASITGAWVAAYDAFEMWRKSGKCKRNPLFGQVAAISVGMVGGRLLLDLDYREDSKAEI 187

Query: 175 DL-FVSGTQDAVLMVELEANQ-----LSEDVVLDAIIFGHNECKPVIEAISKL 221
           D+  V   +   + ++    Q      + D +L     G  E   +  A  +L
Sbjct: 188 DMNVVMNAKGEFIEIQGTGEQAPFGKATLDDMLSMAQSGIEELLALQRAAVQL 240


>gi|312199598|ref|YP_004019659.1| ribonuclease PH [Frankia sp. EuI1c]
 gi|311230934|gb|ADP83789.1| ribonuclease PH [Frankia sp. EuI1c]
          Length = 250

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR ++ +RD++   G   +  GS+L   G T+ +   ++     E       G+   
Sbjct: 3   RHDGRAADQLRDVTIVRGWQDQAEGSALINFGRTRVLCAASVT----EGVPRWRKGSGLG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   +      G    R     RL  R++   +        T+ I  +
Sbjct: 59  WVTAEYSMLPRATNTRNDRESVKGRIGGRTHEISRLIGRSLRACIDLKQLGENTIAIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVA--GIAMGLVKDGDDFIILSDISGDEDHL 486
           +  +DG +  A + G+ +AL DA   + +P A  G    +       + + D++  ED  
Sbjct: 119 VLLADGGTRTAAITGAYVALADACGWLGRPKAISGGVSAVSVGVVGGVPMLDLAYVEDSA 178

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              D  V  TD+G    +Q   +       ++   L  A  G   +
Sbjct: 179 ADTDMNVVCTDTGSFVEVQGTAEGVVFDRAMLDQLLDLAVAGCAQL 224



 Score = 41.4 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           Q++G+ L  +G T VL        +   + G     +T  Y     A           + 
Sbjct: 24  QAEGSALINFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATN-TRNDRESVKG 82

Query: 83  RPTENEILISRMIDRSIRPLFS-KCYK-NETQVIINVMQHDLESSPHVVSMVAASAALM 139
           R       ISR+I RS+R     K    N   +  +V+  D        ++  A  AL 
Sbjct: 83  RIGGRTHEISRLIGRSLRACIDLKQLGENTIAIDCDVLLADGG--TRTAAITGAYVALA 139


>gi|282882977|ref|ZP_06291581.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|281297184|gb|EFA89676.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
          Length = 238

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 85/240 (35%), Gaps = 24/240 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R+I      +    GS L   G+T+ +    +    +E+    L G +      
Sbjct: 5   RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAII----EEKVPPFLRGKEMGWVSA 60

Query: 377 HYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ LP +T          G    R     RL  R++   +   A    T+ +  ++  +
Sbjct: 61  EYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINA 120

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +   ++ GS LAL                PI   V  I++G V      I L D+  
Sbjct: 121 DGGTRTTSINGSYLALEMAVNKALKNKRLEVNPIKCKVGSISVGKV----KGIKLVDLDY 176

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED    +D  +   D   I  +Q   +    +   +   L+ A+ G   I   M  V  
Sbjct: 177 KEDSNADVDLNLVMNDKFEIIEIQGTSERDTFTAEELAEFLKFAQIGIKDIFKYMEIVEE 236



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 75/214 (35%), Gaps = 23/214 (10%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLR--RESR 83
            +DG+VL   G T V+ T + +  +        +     E +   G      +R     +
Sbjct: 22  NADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVSAEYSMLPGSTVIRKVRDISRGK 81

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAAL--M 139
                  I R+I RS+R         E  +    +V+  D        S+  +  AL   
Sbjct: 82  QDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINADGG--TRTTSINGSYLALEMA 139

Query: 140 LSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLM 187
           ++           P +  V    V  + G  +++    ED      L+L ++  +  ++ 
Sbjct: 140 VNKALKNKRLEVNPIKCKVGSISVGKVKGIKLVDLDYKEDSNADVDLNLVMN-DKFEIIE 198

Query: 188 VELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++  +  +  + + + + + F     K + + + 
Sbjct: 199 IQGTSERDTFTAEELAEFLKFAQIGIKDIFKYME 232


>gi|260435940|ref|ZP_05789910.1| ribonuclease PH [Synechococcus sp. WH 8109]
 gi|260413814|gb|EEX07110.1| ribonuclease PH [Synechococcus sp. WH 8109]
          Length = 247

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 22/246 (8%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R DGR  + +R  S     +     S +   G T  +  V L    +++      G  
Sbjct: 6   EQRTDGRRPQQLRPFSVNWNPMGFALSSLVVHTGRTAVLCSVCL----EDKVPRWRKGEG 61

Query: 371 RNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                  Y  LP +T +         S R     RL  R++  V+        TL I  +
Sbjct: 62  FGWLSAEYRLLPGSTPQRQSRELMKLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCD 121

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A++ G+ LA       L+D GV    P+   VA +++GLV    D   L 
Sbjct: 122 VIQADAGTRTASITGAWLALDQACRSLVDQGVLEQSPLIDQVAAVSVGLV----DGQALL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V  +  G +  +Q   +    S + +   L  A+ G   ++    
Sbjct: 178 DLDYSEDSRAEVDLNVVQSGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLTSLMQAQR 237

Query: 537 KVLSES 542
           +  +E 
Sbjct: 238 QAFNEH 243



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 25/187 (13%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +++   G T VL +V  +  +   + G+ F  L+  Y+      G  P    R   
Sbjct: 29  FALSSLVVHTGRTAVLCSVCLEDKVPRWRKGEGFGWLSAEYRLLP---GSTPQRQSRELM 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL-- 138
           + +     I R+I RS+R +       E    +  +V+Q D        S+  A  AL  
Sbjct: 86  KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQADAG--TRTASITGAWLALDQ 143

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                    +L   P    V    V  ++GQ +L+    ED   +  L++  SG    +L
Sbjct: 144 ACRSLVDQGVLEQSPLIDQVAAVSVGLVDGQALLDLDYSEDSRAEVDLNVVQSG-DGRLL 202

Query: 187 MVELEAN 193
            ++  A 
Sbjct: 203 EIQGTAE 209


>gi|304440366|ref|ZP_07400255.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371118|gb|EFM24735.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 435

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 24/240 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R+   +RD+      L    GS L   G+T+ IV   +    +++    L G        
Sbjct: 4   REFNKIRDLKITPNYLSSPDGSCLVEMGNTKIIVTAMI----EDKVPFFLKGQGVGWLSA 59

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ +P +T          G    R     RL  RA+   +  +     T+ I  ++  +
Sbjct: 60  EYSMIPGSTQRRKPRDISRGKIDGRSQEIQRLIGRALRSAIDLSLIGERTIWIDCDVISA 119

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +   +V G  +AL           +    PI + VA I++G V       ++ D+  
Sbjct: 120 DGGTRTLSVTGGFVALKLAVNKYLKEKLIFANPIKRKVAAISLGKVY----GRLMVDLDF 175

Query: 482 DEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           ++D    +D  +   +   I  +Q   +   +    +   ++ ++     I+  +   + 
Sbjct: 176 NDDSKADVDMNIVMDEDHNIIEIQGTSEKSPLKIKELEELVKLSEETIDEIMKIVEDTVP 235



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 28  DGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+ L   G T ++ T + +  +     GQ    L+  Y     +  +     + R  + 
Sbjct: 23  DGSCLVEMGNTKIIVTAMIEDKVPFFLKGQGVGWLSAEYSMIPGSTQRRKPRDISR-GKI 81

Query: 85  TENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS- 141
                 I R+I R++R         E    +  +V+  D       +S+     AL L+ 
Sbjct: 82  DGRSQEIQRLIGRALRSAIDLSLIGERTIWIDCDVISADGG--TRTLSVTGGFVALKLAV 139

Query: 142 ------GLPFEGPV----VGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQD-AVLMVE 189
                  L F  P+        +  + G+ +++    D+ +  +D+ +   +D  ++ ++
Sbjct: 140 NKYLKEKLIFANPIKRKVAAISLGKVYGRLMVDLDFNDDSKADVDMNIVMDEDHNIIEIQ 199

Query: 190 LEANQ--LSEDVVLDAIIFGHNECKPVIEAIS 219
             + +  L    + + +         +++ + 
Sbjct: 200 GTSEKSPLKIKELEELVKLSEETIDEIMKIVE 231


>gi|171741378|ref|ZP_02917185.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
           27678]
 gi|283455270|ref|YP_003359834.1| ribonuclease PH [Bifidobacterium dentium Bd1]
 gi|306823668|ref|ZP_07457043.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309803034|ref|ZP_07697135.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
 gi|171276992|gb|EDT44653.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
           27678]
 gi|283101904|gb|ADB09010.1| rph Ribonuclease PH [Bifidobacterium dentium Bd1]
 gi|304553375|gb|EFM41287.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308220501|gb|EFO76812.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
          Length = 254

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +           GS L   G+T+ +   T  +            +  
Sbjct: 14  IRADGRKVDELRPVRITRRFTDVPEGSVLIECGNTRVMCTATFTSG----VPRWRKDSGL 69

Query: 372 NDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT +     S  G    R     RL  R +  V+   A     ++I  
Sbjct: 70  GWVTAEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMD--------AGVP-----ISKPVAGIAMGLVKDGDDFI 474
           ++ ++DG +  A++ G+ +AL+D          +      +   V+ +++G++    +  
Sbjct: 130 DVLQADGGTRTASITGAYVALVDAMRWAERHRHIKSADRVLKDCVSAVSVGVI----NGK 185

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQA 524
            + D+   ED     D  VA T SG    +Q   +    S   +   L  A
Sbjct: 186 PMLDLPYIEDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFSRAELNALLDLA 236



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 25/187 (13%)

Query: 29  GAVLATYGETVVLATVV-YDRSLKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T        +  +D     +T  Y     A          R  +  
Sbjct: 39  GSVLIECGNTRVMCTATFTSGVPRWRKDSGLGWVTAEYAMLPRATADRTDRESVR-GKIG 97

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML--- 140
                ISR+I R +R +        N+ Q+  +V+Q D        S+  A  AL+    
Sbjct: 98  GRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQADGG--TRTASITGAYVALVDAMR 155

Query: 141 ----------SGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQG--SLDLFVSGTQDAVLM 187
                     +    +  V    V  ING+ +L+ P +++ Q    +++ ++G+ + +  
Sbjct: 156 WAERHRHIKSADRVLKDCVSAVSVGVINGKPMLDLPYIEDSQAMTDMNVAMTGSGEFI-E 214

Query: 188 VELEANQ 194
           ++  A  
Sbjct: 215 IQGTAEH 221


>gi|327542216|gb|EGF28707.1| ribonuclease PH [Rhodopirellula baltica WH47]
          Length = 246

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 28/223 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R  + +R +  + G L+    S L+  G T  +   ++ T         + G  +     
Sbjct: 9   RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVET----NVPPWMEGRGKGWVTA 64

Query: 377 HYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
            YN LP +T    R    G    R     RL  R++  ++   A    ++ +  ++ ++D
Sbjct: 65  EYNMLPGSTSPRKRRDRSGKVDGRTTEIQRLIGRSLRAIIDLHALGERSITVDCDVLQAD 124

Query: 434 GSSSMATVCGSSLAL----------------MDAGVPISKPVAGIAMGLVKDGDDFIILS 477
           G +  A++ G  +AL                +D    +   VA I++G++ +     ++ 
Sbjct: 125 GGTRTASITGGYIALSLAVSQLASIPELAPPIDPTAVLRDSVAAISVGVIGED----VVL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVM 519
           D+    D    +D  V  T SG    +Q   +     +  +  
Sbjct: 181 DLDYRLDSAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAE 223



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++E G +      +VL   G+T+VL T   + ++     G+    +T  Y     + 
Sbjct: 15  RPVEIECGYLESNP-ASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNMLPGST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
              P     R  +       I R+I RS+R +       E    V  +V+Q D       
Sbjct: 74  S--PRKRRDRSGKVDGRTTEIQRLIGRSLRAIIDLHALGERSITVDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----LSGLPFEGP-----------VVGAQVDYINGQYVLNPRLDEDQG 172
            S+     AL      L+ +P   P           V    V  I    VL+     D  
Sbjct: 130 ASITGGYIALSLAVSQLASIPELAPPIDPTAVLRDSVAAISVGVIGEDVVLDLDYRLDSA 189

Query: 173 ---SLDLFVSGTQDAVLMVELEANQLSEDVV--LDAIIFGHNECKPVIEAIS 219
               +++ ++G+   +  ++    + + D V   + +  G      + +   
Sbjct: 190 ADVDMNVIMTGSGRFI-ELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQK 240


>gi|326403855|ref|YP_004283937.1| ribonuclease PH [Acidiphilium multivorum AIU301]
 gi|325050717|dbj|BAJ81055.1| ribonuclease PH [Acidiphilium multivorum AIU301]
          Length = 243

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 89/247 (36%), Gaps = 24/247 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R +    G  +   GS+L   G T+ +   ++  R        L G  +
Sbjct: 5   KRPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGR----VPGFLRGAGQ 60

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+ +TA    T+ +  
Sbjct: 61  GWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDC 120

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL             A  P+   VA ++ G+       + +
Sbjct: 121 DVLNADGGTRCAAITGAWVALALAIRTLRKANVIATDPLIGQVAAVSCGVF----GGVPV 176

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED     D     T   GI  +Q   +     E      L  A++G   +    
Sbjct: 177 LDLDYAEDSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELFTAQ 236

Query: 536 SKVLSES 542
              L  +
Sbjct: 237 RAALDAA 243



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 24/205 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ TG  +R ++G+ L   G T VL     +  +     G     +T  Y     A 
Sbjct: 16  RQVEIVTG-FSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTAEYGMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       + +     I R+I RS+R +  +    E  +    +V+  D       
Sbjct: 75  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNADGG--TRC 131

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            ++  P  G V         G  VL+    ED   +   
Sbjct: 132 AAITGAWVALALAIRTLRKANVIATDPLIGQVAAVSCGVFGGVPVLDLDYAEDSNAEADA 191

Query: 175 DLFVSGTQDAVLMVELEANQLSEDV 199
           +  ++GT   ++ ++  A + + + 
Sbjct: 192 NFVLTGT-GGIVEIQATAERATFEE 215


>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 246

 Score =  131 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 99/230 (43%), Gaps = 10/230 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R+DGRD   +R +  + G+L   +GS+    G+ + +  V  G +E       L+ T
Sbjct: 13  DGKRLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAV-YGPKEA--TPRHLADT 69

Query: 370 QRNDFMMHYNFLPCAT-GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +      Y+  P ++ G+  R G P+RR I   ++ +     V+         + I  E
Sbjct: 70  NKAIIKCRYSMAPFSSMGDHGRSG-PNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIE 128

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           I +SDG +  A +  +++AL +AG+ +   V  ++ G + +     ++ D++  ED+   
Sbjct: 129 ILQSDGGTRAAGITAAAVALANAGIHVKDMVYAVSAGRIDE----HVVIDVNMIEDNYSD 184

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            D  V+ +    + + + M  GG ++     A++        I       
Sbjct: 185 ADMPVSISPKDNSVLLLQMD-GGFTKEQFGEAMKMILESGKVISKVQRDA 233



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 87/215 (40%), Gaps = 10/215 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RPLK+E G +A  ++G+    +G   VLA V   +               + R Y++   
Sbjct: 26  RPLKIEAGILA-NANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIKCR-YSMAPF 83

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                   S P    I IS++         +  +   +E ++ I ++Q D         +
Sbjct: 84  SSMGDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQSDGG--TRAAGI 141

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGT--QDAVLMV 188
            AA+ AL  +G+  +  V       I+   V++   ++++    D+ VS +   ++VL++
Sbjct: 142 TAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMIEDNYSDADMPVSISPKDNSVLLL 201

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +++    +++   +A+       K + +      K
Sbjct: 202 QMDGGF-TKEQFGEAMKMILESGKVISKVQRDALK 235


>gi|315186954|gb|EFU20712.1| RNAse PH [Spirochaeta thermophila DSM 6578]
          Length = 223

 Score =  131 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 21/227 (9%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +S +VG+L    GS L   G+T+ +   ++    +E     +           Y  LP +
Sbjct: 1   MSFEVGVLAYPAGSCLVSFGNTKVLCAASI----EEGVPPFIEQEGEGWLTAEYAMLPAS 56

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
             E  +      R +   R   R++   L +T   PYT+ I  ++ ++DG +  A + G 
Sbjct: 57  VPEGRKRRERDSRAVEIQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGGTRTAAISGG 116

Query: 445 SLALMDAGVPISKP-------------VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
            +AL  A   +++              VA +++G+V    +  +++D+    D    +D 
Sbjct: 117 WVALYQALEKLAELHGVEGPEYFLAGQVAAVSVGIV----EGQLVADLDFAHDLAAQVDM 172

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            V   D  +  +Q + + G  +   +   L  A +    I       
Sbjct: 173 NVVMCDDRLVEVQGNGEKGAFTREELDAMLDLAAQEIGLIYEAQRAA 219



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 33/226 (14%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGK 72
           +  E G +A  + G+ L ++G T VL     +  +    +      LT  Y     +V  
Sbjct: 1   MSFEVGVLAYPA-GSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASV-- 57

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVS 130
            P G  RRE       + I R I RS+R    +       ++   +V+Q D        +
Sbjct: 58  -PEGRKRRE--RDSRAVEIQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGG--TRTAA 112

Query: 131 MVAASAALM--------LSGLPFEGP-------VVGAQVDYINGQYVLNPRLD-EDQGSL 174
           +     AL         L G+  EGP       V    V  + GQ V +     +    +
Sbjct: 113 ISGGWVALYQALEKLAELHGV--EGPEYFLAGQVAAVSVGIVEGQLVADLDFAHDLAAQV 170

Query: 175 DLFVSGTQDAVLMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAI 218
           D+ V    D ++ V+        + + +   +     E   + EA 
Sbjct: 171 DMNVVMCDDRLVEVQGNGEKGAFTREELDAMLDLAAQEIGLIYEAQ 216


>gi|281356100|ref|ZP_06242593.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
 gi|281317469|gb|EFB01490.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
          Length = 247

 Score =  131 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR- 371
           R+DGR  + +R I      L     S L   G T+ +  V++    D +    +   +  
Sbjct: 3   RIDGRAPDELRKIVITPDYLSHPLASVLIRNGGTRVVCAVSI----DAKVPAWMKNRKVP 58

Query: 372 -NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y  LP +T +  +     G    R +   RL  R++            T  + 
Sbjct: 59  GGWITCEYGMLPASTHDRMKRESSAGKQGGRTVEIQRLIGRSLRMSADLLKLGENTAYLD 118

Query: 427 SEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G++ AL  A             P  + VA I++G++      + 
Sbjct: 119 CDVIDADGGTRCAGITGAATALAIACRRGVAKGIFPENPFKESVAAISVGVI----GGVP 174

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           + D+  +ED    +D  V  T+SG +  +Q   +    S   +   +  A+ G   +   
Sbjct: 175 MLDLCYEEDSNAEVDMNVVMTESGKLVEVQGTAEGEPFSRARLNELIDLAEHGLKQVFAM 234

Query: 535 MSKVLSES 542
             + +  +
Sbjct: 235 QREAVETA 242



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 31/222 (13%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD--GQDFFP---LTVNYQERTYAVGKIPGGYLRRE-- 81
            +VL   G T V+  V  D  +         P   +T  Y     +        ++RE  
Sbjct: 27  ASVLIRNGGTRVVCAVSIDAKVPAWMKNRKVPGGWITCEYGMLPASTHDR----MKRESS 82

Query: 82  -SRPTENEILISRMIDRSIR--PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
             +     + I R+I RS+R      K  +N   +  +V+  D +       +  A+ AL
Sbjct: 83  AGKQGGRTVEIQRLIGRSLRMSADLLKLGENTAYLDCDVI--DADGGTRCAGITGAATAL 140

Query: 139 MLS-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQ-DAV 185
            ++       G+    PF+  V    V  I G  +L+   +ED    +D+ V  T+   +
Sbjct: 141 AIACRRGVAKGIFPENPFKESVAAISVGVIGGVPMLDLCYEEDSNAEVDMNVVMTESGKL 200

Query: 186 LMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
           + V+   E    S   + + I    +  K V     +  +  
Sbjct: 201 VEVQGTAEGEPFSRARLNELIDLAEHGLKQVFAMQREAVETA 242


>gi|32473863|ref|NP_866857.1| ribonuclease PH [Rhodopirellula baltica SH 1]
 gi|61216016|sp|Q7URE2|RNPH_RHOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|32444399|emb|CAD74398.1| ribonuclease PH [Rhodopirellula baltica SH 1]
          Length = 246

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 28/223 (12%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R  + +R +  + G L+    S L+  G T  +   ++ T         + G  +     
Sbjct: 9   RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVET----NVPPWMEGRGKGWVTA 64

Query: 377 HYNFLPCATGEVSRM---GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
            YN LP +T    R    G    R     RL  R++  ++   A    ++ +  ++ ++D
Sbjct: 65  EYNMLPGSTSPRKRRDRSGKVDGRTTEIQRLIGRSLRAIVDLHALGERSITVDCDVLQAD 124

Query: 434 GSSSMATVCGSSLAL-----MDAGVP-----------ISKPVAGIAMGLVKDGDDFIILS 477
           G +  A++ G  +AL       A +P           +   VA I++G++ +     ++ 
Sbjct: 125 GGTRTASITGGYIALSLAVSQLAAIPELDPPVDPTAVLRDSVAAISVGVIGED----VVL 180

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVM 519
           D+    D    +D  V  T SG    +Q   +     +  +  
Sbjct: 181 DLDYRLDSAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAE 223



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 32/232 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+++E G +      +VL   G+T+VL T   + ++     G+    +T  Y     + 
Sbjct: 15  RPVEIECGYLESNP-ASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNMLPGST 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHV 128
              P     R  +       I R+I RS+R +       E    V  +V+Q D       
Sbjct: 74  S--PRKRRDRSGKVDGRTTEIQRLIGRSLRAIVDLHALGERSITVDCDVLQADGG--TRT 129

Query: 129 VSMVAASAALM-----LSGLPFEGP-----------VVGAQVDYINGQYVLNPRLDEDQG 172
            S+     AL      L+ +P   P           V    V  I    VL+     D  
Sbjct: 130 ASITGGYIALSLAVSQLAAIPELDPPVDPTAVLRDSVAAISVGVIGEDVVLDLDYRLDSA 189

Query: 173 ---SLDLFVSGTQDAVLMVELEANQLSEDVV--LDAIIFGHNECKPVIEAIS 219
               +++ ++G+   +  ++    + + D V   + +  G      + +   
Sbjct: 190 ADVDMNVIMTGSGRFI-ELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQK 240


>gi|33864097|ref|NP_895657.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
 gi|61216018|sp|Q7V4V8|RNPH_PROMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33635681|emb|CAE22005.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
          Length = 244

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 22/242 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R DGR ++ +R +      +     S +   G T  +  V +    +E       G  
Sbjct: 6   QPRADGRLADVMRPLQITWDPMGFALSSLIIRTGRTSVLCSVCV----EEGVPRWRKGQG 61

Query: 371 RNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           +      Y  LP +T +         S R     RL  R++  V+   A    TLRI  +
Sbjct: 62  KGWLSAEYRLLPGSTPQRQNRELLKLSGRTQEIQRLIGRSLRAVIDMAALGETTLRIDCD 121

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A++ G+ +A       L++ G+    P+ + VA +++GLV+       L 
Sbjct: 122 VIQADAGTRTASITGAWIALKRGCDRLLEQGLLTHQPVIEQVAAVSVGLVESYP----LL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V    +G +  +Q   +    S N +   L  A+ G  H+     
Sbjct: 178 DLDYSEDSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQAFQR 237

Query: 537 KV 538
             
Sbjct: 238 SA 239



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 25/213 (11%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +++   G T VL +V  +  +   + GQ    L+  Y+      G  P    R   
Sbjct: 29  FALSSLIIRTGRTSVLCSVCVEEGVPRWRKGQGKGWLSAEYRLLP---GSTPQRQNRELL 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHVVSMVAASAAL-- 138
           + +     I R+I RS+R +       ET   +  +V+Q D        S+  A  AL  
Sbjct: 86  KLSGRTQEIQRLIGRSLRAVIDMAALGETTLRIDCDVIQADAG--TRTASITGAWIALKR 143

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLM 187
                    +L+  P    V    V  +    +L+    ED +  +DL  V G+   +L 
Sbjct: 144 GCDRLLEQGLLTHQPVIEQVAAVSVGLVESYPLLDLDYSEDSRADVDLNVVMGSNGHLLE 203

Query: 188 VELEANQ--LSEDVVLDAIIFGHNECKPVIEAI 218
           ++  A     S + + D +       + +    
Sbjct: 204 LQGTAEGAPFSRNQLNDLLNLAEPGLQHLQAFQ 236


>gi|320352955|ref|YP_004194294.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
 gi|320121457|gb|ADW17003.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
          Length = 235

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 15/227 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R ++ +R  S + G+     GS L   G+T  +  VT+    +++    L    +
Sbjct: 1   MRSGERSADALRPFSVEYGVQPHADGSVLIRMGNTHVLCGVTV----EDRVPPFLKDKGQ 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSR---REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 Y  LPCAT    R  A S    R     RL  R++  ++  +    +TLR+  +
Sbjct: 57  GWITAEYGMLPCATHSRGRREAVSGLSGRTHEIQRLIGRSLRMMVDLSLLGEHTLRVDCD 116

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           +  +DG +  A++ G +LA       +++ G   + P       +         + D+  
Sbjct: 117 VLNADGGTRCASITGGALAVKMALARMVERGRLPALPPLLPVAAISAGVVAGQPVLDLDY 176

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
            ED    +D     +  G    +Q   + G     +     + A RG
Sbjct: 177 AEDSSAEVDANFVMSGDGRWIEVQSTAEGGPFHPQLFTAMAELAARG 223



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 67/202 (33%), Gaps = 46/202 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----GQDFFPLTVNYQERTY 68
           RP  +E G +   +DG+VL   G T VL  V  +  +       GQ +  +T  Y     
Sbjct: 12  RPFSVEYG-VQPHADGSVLIRMGNTHVLCGVTVEDRVPPFLKDKGQGW--ITAEYGMLPC 68

Query: 69  AVGKIPGGYLRRE--SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           A         RRE  S  +     I R+I RS+R +       E         H L    
Sbjct: 69  AT----HSRGRREAVSGLSGRTHEIQRLIGRSLRMMVDLSLLGE---------HTLRVDC 115

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQV--------------------DYINGQYVLNPR 166
            V++    +    ++G      +  A++                      + GQ VL+  
Sbjct: 116 DVLNADGGTRCASITGGALAVKMALARMVERGRLPALPPLLPVAAISAGVVAGQPVLDLD 175

Query: 167 LDEDQG---SLDLFVSGTQDAV 185
             ED       +  +SG    +
Sbjct: 176 YAEDSSAEVDANFVMSGDGRWI 197


>gi|300087418|ref|YP_003757940.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527151|gb|ADJ25619.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 240

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 24/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +  +R ++   G      GS L  +G T+ I  V+     +E+    L  +   
Sbjct: 3   RIDGRAANAMRPVTITPGFQAFADGSVLIEQGKTRVICSVS----MEERVPAFLRNSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y  LP AT   +      G  S R     RL  R++  V   +A    +  +  +
Sbjct: 59  WVTAEYAMLPRATTSRTPRESVKGKVSGRSQEIQRLIGRSLRAVTDLSALGERSFVVDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A + G  +AL               +P+   VA I++ + ++     +L 
Sbjct: 119 VIQADAGTRTAAITGGYVALYLALNKLFRLGVFKEMPLRAQVAAISVVMRQNN----LLL 174

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D   +ED     DF +     G    +Q   +      N +   L  A++G   +     
Sbjct: 175 DPVYEEDCGADADFNLVMNSKGEFLEIQGTAEQRPFKRNTLDAVLGLAEKGIGQLFEIQQ 234

Query: 537 K 537
            
Sbjct: 235 T 235



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 36/206 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP-------LTVNYQER 66
           RP+ +  G  A  +DG+VL   G+T V+ +V    S+++    F        +T  Y   
Sbjct: 13  RPVTITPGFQA-FADGSVLIEQGKTRVICSV----SMEERVPAFLRNSGTGWVTAEYAML 67

Query: 67  TYA-VGKIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNETQVIINVMQHDL 122
             A   + P   ++   + +     I R+I RS+R    L +   ++   V  +V+Q D 
Sbjct: 68  PRATTSRTPRESVK--GKVSGRSQEIQRLIGRSLRAVTDLSALGERSFV-VDCDVIQADA 124

Query: 123 ESSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED- 170
                  ++     AL L+            +P    V    V       +L+P  +ED 
Sbjct: 125 G--TRTAAITGGYVALYLALNKLFRLGVFKEMPLRAQVAAISVVMRQNNLLLDPVYEEDC 182

Query: 171 --QGSLDLFVSGTQDAVLMVELEANQ 194
                 +L ++ ++   L ++  A Q
Sbjct: 183 GADADFNLVMN-SKGEFLEIQGTAEQ 207


>gi|291286002|ref|YP_003502818.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
 gi|290883162|gb|ADD66862.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
          Length = 236

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 24/240 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++++R +      +    GS L   GDT+ I   ++     E     L  +       
Sbjct: 5   RKNDSLRKVEIIKDYISHPEGSVLVAFGDTKVICNASV----SEGVPPFLRDSGTGWVTA 60

Query: 377 HYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP AT       S+ G    R     RL  R++   +        T+ I  ++ ++
Sbjct: 61  EYAMLPRATHTRNQRESKRGKQDGRSQEISRLIGRSLRAAVDFEKLGENTVTIDCDVIQA 120

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A + G   AL           M A  P++  V+ I++G+V        + D+  
Sbjct: 121 DGGTRTAAITGGFCALYMACEWMIKQGMIAENPVTGMVSAISVGIVMGEP----MLDLEY 176

Query: 482 DEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED +  +D  +   D+  I  +Q   +      +++   L    +G   + +   +V+ 
Sbjct: 177 AEDSIADVDMNLVVKDNAEIVEIQGSAEKVAFDRDLLNKMLDLGFKGIKELTDIQKQVIK 236



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 25/216 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL  +G+T V+        +           +T  Y     A         +R  +  
Sbjct: 25  GSVLVAFGDTKVICNASVSEGVPPFLRDSGTGWVTAEYAMLPRATHTRNQRESKR-GKQD 83

Query: 86  ENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM---- 139
                ISR+I RS+R    F K  +N   +  +V+Q D        ++     AL     
Sbjct: 84  GRSQEISRLIGRSLRAAVDFEKLGENTVTIDCDVIQADGG--TRTAAITGGFCALYMACE 141

Query: 140 -------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVE 189
                  ++  P  G V    V  + G+ +L+    ED      ++L V    + ++ ++
Sbjct: 142 WMIKQGMIAENPVTGMVSAISVGIVMGEPMLDLEYAEDSIADVDMNLVVKDNAE-IVEIQ 200

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
             A +++   D++   +  G    K + +   ++ K
Sbjct: 201 GSAEKVAFDRDLLNKMLDLGFKGIKELTDIQKQVIK 236


>gi|261415038|ref|YP_003248721.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371494|gb|ACX74239.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326761|gb|ADL25962.1| tRNA nucleotidyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 241

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 22/235 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R  E  R++    G +    GS L   G T+ I   TL  +      D L+G        
Sbjct: 8   RKPEEFRNLKMTTGFISSADGSVLIEMGRTRVICNATLLPK----VPDWLAGRGTGWITA 63

Query: 377 HYNFLPCATGEV--SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
            Y+ LP +TG+         S R     RL  R++       A     + +  ++ E+DG
Sbjct: 64  EYSLLPQSTGKRVERERKGASGRTQEIQRLVGRSLRGAADLAALGENAIVVDCDVIEADG 123

Query: 435 SSSMATVCGSSLALMDAGVPISKP-----------VAGIAMGLVKDGDDFIILSDISGDE 483
            +  A++ G  +AL  A   I +            +  I++G+V    D   L D+   E
Sbjct: 124 GTRTASIIGGFVALAIAVKKIKERLGITQQILKHGITAISVGVV----DGNPLCDLCYVE 179

Query: 484 DHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D    +D  V   D      +Q   +       ++   L   +     I  +  +
Sbjct: 180 DSAADVDMNVVMQDAKNFIEVQGTGEHASFDRAMLNTLLDLGENACKEIYKKQME 234



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 28/229 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R LK+ TG I+  +DG+VL   G T V+        + D   G+    +T  Y     + 
Sbjct: 14  RNLKMTTGFISS-ADGSVLIEMGRTRVICNATLLPKVPDWLAGRGTGWITAEYSLLPQST 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           GK      R     +     I R++ RS+R     +   +N   V  +V++ D       
Sbjct: 73  GK---RVERERKGASGRTQEIQRLVGRSLRGAADLAALGENAIVVDCDVIEADGG--TRT 127

Query: 129 VSMVAASAALMLSGLPFEGPVV-----------GAQVDYINGQYVLNPRLDEDQG---SL 174
            S++    AL ++    +  +               V  ++G  + +    ED      +
Sbjct: 128 ASIIGGFVALAIAVKKIKERLGITQQILKHGITAISVGVVDGNPLCDLCYVEDSAADVDM 187

Query: 175 DLFVSGTQDAVLMVELEANQLSED-VVLDA-IIFGHNECKPVIEAISKL 221
           ++ +   ++ +  V+      S D  +L+  +  G N CK + +   +L
Sbjct: 188 NVVMQDAKNFI-EVQGTGEHASFDRAMLNTLLDLGENACKEIYKKQMEL 235


>gi|226357252|ref|YP_002786992.1| tRNA nucleotidyltransferase [Deinococcus deserti VCD115]
 gi|226319242|gb|ACO47238.1| putative tRNA nucleotidyltransferase (Phosphate-dependent
           exonuclease) (Ribonuclease PH) (RNase PH) [Deinococcus
           deserti VCD115]
          Length = 249

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 101/249 (40%), Gaps = 22/249 (8%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           + +V  +K    +GR     R +S + G+     GS+  I G T+ +  VTL    +++ 
Sbjct: 1   MTSVQPNKFPPREGRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTL----EDKP 56

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFP 420
              + G +       Y+ LP AT +         + R     RL  RA+   +       
Sbjct: 57  APHMRGKKEGWLTAEYSMLPRATNDRQARERNLQNGRRHEIQRLLGRALRASVDLKYFRN 116

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKD 469
            T+ +  ++  +DG + +A++     AL D           +  P++  V  I++GLV +
Sbjct: 117 QTIYVDCDVLVADGGTRVASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLVGE 176

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGR 528
                +  D+   ED +   D  V  TD+G +  +Q   + G IS       L    +  
Sbjct: 177 E----VRVDLDYAEDKVARADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLLHTGVQAI 232

Query: 529 LHILNEMSK 537
             +++E+ +
Sbjct: 233 HGVMDELGR 241



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 83/231 (35%), Gaps = 25/231 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+ ++ G +   + G+     G T +LATV  +              LT  Y     A 
Sbjct: 21  RPVSVKRG-VNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYSMLPRAT 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPHV 128
                   R  +        I R++ R++R     K ++N+T  V  +V+  D      V
Sbjct: 80  ND---RQARERNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG--TRV 134

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S++A  AAL            LS  P    V    V  +  +  ++    ED+    DL
Sbjct: 135 ASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLVGEEVRVDLDYAEDKVARADL 194

Query: 177 FVSGTQDA-VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            V  T    V+ V+  A +     + +     H   + +   + +L +  A
Sbjct: 195 NVVATDTGLVIEVQGGAEEGPIS-LAEYSQLLHTGVQAIHGVMDELGRELA 244


>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
           pisum]
          Length = 249

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 99/244 (40%), Gaps = 11/244 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  + +R DGR S  +R I  ++G+  +  GS+   +G+T+  V    G  E  +   
Sbjct: 2   DLLSRQGLRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKV-VAAIYGPHEI-RTNR 59

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +          Y+    +  E  R    + +        ++A+   +         + 
Sbjct: 60  AKAPNDSAVINCQYSMATFSRSERKRRPRDN-KSAELTLHLKQAMATAIKTDLYPKSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ +SDG +    V  ++LAL+DAG+ + + V      L         L DIS  E+
Sbjct: 119 IFVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGE---TPLVDISHLEE 175

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            +G     VA       I  ++   +   I  N +   L +A RG  +I   ++K++ + 
Sbjct: 176 TMGGPSLTVAILPISGKIAMLETSQR---IHINHLEPVLTEAVRGCRYIYENLNKIIKKH 232

Query: 543 RLQL 546
             ++
Sbjct: 233 YEEI 236



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 82/212 (38%), Gaps = 16/212 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q DG+     G T V+A +     ++  +   P         Y++        +R  R  
Sbjct: 31  QPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAVINCQYSMATFSRSERKRRPRDN 90

Query: 86  ENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
           ++  L   +  +++          K++  + + V+Q D  +    V + AA+ AL+ +G+
Sbjct: 91  KSAELTLHL-KQAMATAIKTDLYPKSQIDIFVQVLQSDGGNYS--VCVNAATLALIDAGI 147

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQG----SLDLFVSGTQDAVLMVELEAN---QLS 196
             E  V+       NG+  L      ++     SL + +      + M+E          
Sbjct: 148 AMEEFVISCTSSLANGETPLVDISHLEETMGGPSLTVAILPISGKIAMLETSQRIHINHL 207

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           E V+ +A+      C+ + E ++K+ K   +E
Sbjct: 208 EPVLTEAVRG----CRYIYENLNKIIKKHYEE 235


>gi|148260661|ref|YP_001234788.1| ribonuclease PH [Acidiphilium cryptum JF-5]
 gi|146402342|gb|ABQ30869.1| RNAse PH [Acidiphilium cryptum JF-5]
          Length = 243

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 81/222 (36%), Gaps = 24/222 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R  GR ++ +R +    G  +   GS+L   G T+ +   ++  R        L G  +
Sbjct: 5   KRPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGR----VPGFLRGAGQ 60

Query: 372 NDFMMHYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  LP AT          G  S R     RL  R++  V+ +TA    T+ +  
Sbjct: 61  GWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDC 120

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A + G+ +AL             A  P+   VA ++ G+       + +
Sbjct: 121 DVLNADGGTRCAAITGAWVALALAIRTLRKANVIATDPLIGQVAAVSCGVF----GGVPV 176

Query: 477 SDISGDEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIM 517
            D+   ED     D     T   GI  +Q   +     E   
Sbjct: 177 LDLDYAEDSNAEADANFVLTGTGGIVEIQATAERATFEEATF 218



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 24/205 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           R +++ TG  +R ++G+ L   G T VL     +  +     G     +T  Y     A 
Sbjct: 16  RQVEIVTG-FSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTAEYGMLPRAT 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHV 128
               G       + +     I R+I RS+R +  +    E  +    +V+  D       
Sbjct: 75  -HTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNADGG--TRC 131

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSL 174
            ++  A  AL            ++  P  G V         G  VL+    ED   +   
Sbjct: 132 AAITGAWVALALAIRTLRKANVIATDPLIGQVAAVSCGVFGGVPVLDLDYAEDSNAEADA 191

Query: 175 DLFVSGTQDAVLMVELEANQLSEDV 199
           +  ++GT   ++ ++  A + + + 
Sbjct: 192 NFVLTGT-GGIVEIQATAERATFEE 215


>gi|162456258|ref|YP_001618625.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
 gi|161166840|emb|CAN98145.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
          Length = 257

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 25/260 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR  +  R +   +G  +   GS L+  G T  +   ++           + G    
Sbjct: 3   RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPA----WMMGKGAG 58

Query: 373 DFMMHYNFLPCATGEV-----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                Y   P ++         R  APS R     RL  RA+   +        T+ I  
Sbjct: 59  WLTAEYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDC 118

Query: 428 EITESDGSSSMATVCGSSLALMDA----------GVP-ISKPVAGIAMGLVKDGDDFIIL 476
           ++ E+DG +  A++    +AL  A            P +   VA I++G +  G    + 
Sbjct: 119 DVLEADGGTRTASITAGFVALALALDRMRAAGSLEAPVLRDQVAAISVGHLPGG----LA 174

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V  T  G I  +Q   +   I    +      A  G   + +  
Sbjct: 175 LDLVYTEDSSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQ 234

Query: 536 SKVLSESRLQLGEFTPRVEI 555
            + LS + + L         
Sbjct: 235 HRALSSAGVDLSALFQTDRW 254



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 34/228 (14%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           R ++G+VL   G TVVL T   + ++     G+    LT  YQ    +         RRE
Sbjct: 23  RNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTAEYQMHPRS------SPARRE 76

Query: 82  SR------PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVA 133
            R      P+     I R+I R++R      +  E    +  +V++ D        S+ A
Sbjct: 77  PRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLEADGG--TRTASITA 134

Query: 134 ASAALMLS----------GLP-FEGPVVGAQVDYINGQYVLNPRLDEDQG-SLDLFVSGT 181
              AL L+            P     V    V ++ G   L+    ED    +D+ V  T
Sbjct: 135 GFVALALALDRMRAAGSLEAPVLRDQVAAISVGHLPGGLALDLVYTEDSSARVDMNVVAT 194

Query: 182 Q-DAVLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
              +++ V+   E   +    +             +  A  +      
Sbjct: 195 AVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQHRALSSAG 242


>gi|124024144|ref|YP_001018451.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
 gi|123964430|gb|ABM79186.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
          Length = 244

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 93/242 (38%), Gaps = 22/242 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R DGR ++ +R +      +     S +   G T  +  V +    +E       G  
Sbjct: 6   QPRADGRLADVMRPLQVTWDPMGFALSSLIIRTGRTAVLCSVCV----EEGVPRWRQGQG 61

Query: 371 RNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           +      Y  LP +T +         S R     RL  R++  V+   A    TLRI  +
Sbjct: 62  KGWLSAEYRLLPGSTPQRQNRELLKLSGRTQEIQRLIGRSLRAVIDMAALRETTLRIDCD 121

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A + G+ +A       L++ G+    P+   VA +++GLV    D   L 
Sbjct: 122 VIQADAGTRTAAITGAWIALKRGCDRLLEQGLLTHQPVIDQVAAVSVGLV----DSYPLL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V    +G +  +Q   +    S N +   L  A+ G  H+     
Sbjct: 178 DLDYSEDSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQTFQR 237

Query: 537 KV 538
             
Sbjct: 238 SA 239



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 23/186 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +++   G T VL +V  +  +   + GQ    L+  Y+      G  P    R   
Sbjct: 29  FALSSLIIRTGRTAVLCSVCVEEGVPRWRQGQGKGWLSAEYRLLP---GSTPQRQNRELL 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLESSPHVVSMVAASAAL-- 138
           + +     I R+I RS+R +       ET   +  +V+Q D        ++  A  AL  
Sbjct: 86  KLSGRTQEIQRLIGRSLRAVIDMAALRETTLRIDCDVIQADAG--TRTAAITGAWIALKR 143

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLM 187
                    +L+  P    V    V  ++   +L+    ED +  +DL  V G+   +L 
Sbjct: 144 GCDRLLEQGLLTHQPVIDQVAAVSVGLVDSYPLLDLDYSEDSRADVDLNVVMGSNGHLLE 203

Query: 188 VELEAN 193
           ++  A 
Sbjct: 204 LQGTAE 209


>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
 gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
          Length = 247

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 17/238 (7%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           + +  + +R+DGR +  +R I+ ++G+ +R  GS+ + +G+T+ I  V  G RE      
Sbjct: 5   SYISPEGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAV-YGPREI----- 58

Query: 365 SLSGTQ-RNDFMMHYNFLPCATGEVSRMG----APSRREIGHGRLARRAIHPVLPQTAQF 419
           S+SG    +  ++   F   +     R         R       L ++A    +      
Sbjct: 59  SVSGKGVFDRAVVKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYP 118

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              + I  ++ +SDG    A +  S+LAL+DAG+ +   +   +   +    D I + D+
Sbjct: 119 RSQINIYLQVLQSDGGLKAAAINASTLALIDAGISMKDFICACSTSCI----DGIAVLDL 174

Query: 480 SGDEDHLGHMD--FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +  E+  G  D    +     G+ ++ MD K+       ++   ++  +    IL++ 
Sbjct: 175 NNIEERSGGPDCLLSIQPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDY 232



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 84/218 (38%), Gaps = 12/218 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYA 69
           R + +E G I +++DG+     G T ++A V   R +    K   D   +       + +
Sbjct: 23  RRINVEMG-IFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVVKCE---FSSS 78

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                    +++++       I+ ++ ++            +Q+ I +     +      
Sbjct: 79  SFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVLQSDGGLKAA 138

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVL 186
           ++ A++ AL+ +G+  +  +       I+G  VL+    E++       L +      V+
Sbjct: 139 AINASTLALIDAGISMKDFICACSTSCIDGIAVLDLNNIEERSGGPDCLLSIQPQIGGVI 198

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            + +++  + +D+    +  G   CK +   +S   K 
Sbjct: 199 SLNMDSK-VPQDLFESVLELGEKGCKKIFSILSDYVKK 235


>gi|320335008|ref|YP_004171719.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
 gi|319756297|gb|ADV68054.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
          Length = 236

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 22/235 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +   R +    G+     GS+L   G TQ +  VT+  +        + G +    M 
Sbjct: 5   RPTTEPRPLHVTRGVNMHAEGSALLHLGRTQVLATVTVDPK----VPPHMRGKKTGWLMA 60

Query: 377 HYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
            Y+ +P AT + +       + R     RL  RA    +        TL +  ++ ++DG
Sbjct: 61  EYSMMPRATQDRTPRDRNLSNGRRHEIQRLLGRAFRATVDLRHFRDRTLVVDCDVLQADG 120

Query: 435 SSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            + +A+V     AL D           +  P+   V   ++GLV       +  D+   E
Sbjct: 121 GTRVASVLAGYAALWDYADRLIRTGKLSEWPLLHEVGACSVGLVGGE----VRVDLDYLE 176

Query: 484 DHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D     D  V  T SG +   Q   +   I+  +    L+    G   +L  + +
Sbjct: 177 DVQAEADLNVVATSSGLLIEAQGGAEGAPIAPGVYEQLLRAGLDGTRTLLARVHE 231



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 25/199 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RPL +  G +   ++G+ L   G T VLATV  D  +           L   Y     A 
Sbjct: 11  RPLHVTRG-VNMHAEGSALLHLGRTQVLATVTVDPKVPPHMRGKKTGWLMAEYSMMPRAT 69

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPH 127
             + P        R  E    I R++ R+ R     + +++ T V+  +V+Q D      
Sbjct: 70  QDRTPRDRNLSNGRRHE----IQRLLGRAFRATVDLRHFRDRTLVVDCDVLQADGG--TR 123

Query: 128 VVSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLD 175
           V S++A  AAL            LS  P    V    V  + G+  ++    ++ Q   D
Sbjct: 124 VASVLAGYAALWDYADRLIRTGKLSEWPLLHEVGACSVGLVGGEVRVDLDYLEDVQAEAD 183

Query: 176 LFVSGTQDAVLMVELEANQ 194
           L V  T   +L+      +
Sbjct: 184 LNVVATSSGLLIEAQGGAE 202


>gi|300813206|ref|ZP_07093574.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512659|gb|EFK39791.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 238

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 24/240 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  +R+I      +    GS L   G+T+ +    +    +E+    L G +      
Sbjct: 5   RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAII----EEKVPPFLRGKEMGWVSA 60

Query: 377 HYNFLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ LP +T          G    R     RL  R++   +   A    T+ +  ++  +
Sbjct: 61  EYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINA 120

Query: 433 DGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +   ++ GS +AL                PI   V  I++G V      I L D+  
Sbjct: 121 DGGTRTTSINGSYIALEMAVNKALKNKKLEVNPIKCKVGSISVGKV----KGIKLVDLDY 176

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ED    +D  +   D   I  +Q   +    +   +   L+ A+ G   I   M  V  
Sbjct: 177 KEDSNADVDLNLVMNDKFEIIEIQGTSERDTFTTEELAEFLKFAQIGIKDIFKYMEIVEE 236



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 75/214 (35%), Gaps = 23/214 (10%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLR--RESR 83
            +DG+VL   G T V+ T + +  +        +     E +   G      +R     +
Sbjct: 22  NADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVSAEYSMLPGSTVIRKVRDISRGK 81

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAAL--M 139
                  I R+I RS+R         E  +    +V+  D        S+  +  AL   
Sbjct: 82  QDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINADGG--TRTTSINGSYIALEMA 139

Query: 140 LSGL---------PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLM 187
           ++           P +  V    V  + G  +++    ED      L+L ++  +  ++ 
Sbjct: 140 VNKALKNKKLEVNPIKCKVGSISVGKVKGIKLVDLDYKEDSNADVDLNLVMN-DKFEIIE 198

Query: 188 VELEA--NQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++  +  +  + + + + + F     K + + + 
Sbjct: 199 IQGTSERDTFTTEELAEFLKFAQIGIKDIFKYME 232


>gi|221632459|ref|YP_002521680.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
 gi|221156234|gb|ACM05361.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
          Length = 243

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 14/233 (6%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR ++ +R +      +    GS+L + G+T  +   T+    +E+    L G+ +    
Sbjct: 11  GRANDELRPVEIVPHYIPYAEGSALIMLGNTHVLCAATV----EERVPSFLVGSGQGWIT 66

Query: 376 MHYNFLPCATGEV--SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
             Y  LP +  E        P  R     RL  R++   +   A    T+ I  ++  +D
Sbjct: 67  AEYGMLPRSGRERIPRERMGPGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRAD 126

Query: 434 GSSSMATVCGSSL-------ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
           G +  A + G  +        L+  G   S PV      +           D+   ED  
Sbjct: 127 GGTRTAAITGGWVALHLALQHLLAEGRIESLPVVRQVAAVSVGVVAGQPRLDLEYAEDSC 186

Query: 487 GHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +D  +  TD G    +Q   +       ++   L+ A+RG   ++    + 
Sbjct: 187 AEVDMNIVMTDRGEFVELQGTAEGQPFGREVLEQLLRLAERGISELMLVQRRA 239



 Score = 37.6 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV-GKIPGGYLRRES 82
           ++G+ L   G T VL     +  +     G     +T  Y     +   +IP    R   
Sbjct: 30  AEGSALIMLGNTHVLCAATVEERVPSFLVGSGQGWITAEYGMLPRSGRERIP----RERM 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL 122
            P      I R+I RS+R         E  +I   +V++ D 
Sbjct: 86  GPGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRADG 127


>gi|313887997|ref|ZP_07821675.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845952|gb|EFR33335.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 238

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 81/233 (34%), Gaps = 24/233 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++  R I      L    GS L   G T+ I    +    + +    L G  +     
Sbjct: 5   RQNDEARQIRITPNYLDHPDGSVLIECGKTRVICSAMI----ENKVPGFLRGKNKGWLSS 60

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y+ LP +T          G    R     RL  RA+   +        T+ I  ++  +
Sbjct: 61  EYSMLPGSTPTRKVRDISKGKLDGRSSEISRLIGRALRTCIDLDKIGERTIWIDCDVISA 120

Query: 433 DGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG +  A + GS +AL                PI   VA I++G V    + + L D+  
Sbjct: 121 DGGTRTAAITGSYIALKLAVKKALENKKFEEDPIVSKVAAISVGKV----NGVKLVDLDF 176

Query: 482 DEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ED    +D  V   D   +  +Q   +    S   +   L  AKR    I +
Sbjct: 177 KEDSNADVDLNVVMNDDFQLIEIQGTGEKDTFSIEELNEFLLGAKRCIGEIFD 229



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 27/218 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLR--RES 82
           DG+VL   G+T V+ + + +  +     G++   L+  Y       G  P   +R   + 
Sbjct: 24  DGSVLIECGKTRVICSAMIENKVPGFLRGKNKGWLSSEYSMLP---GSTPTRKVRDISKG 80

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALML 140
           +       ISR+I R++R         E    +  +V+  D        ++  +  AL L
Sbjct: 81  KLDGRSSEISRLIGRALRTCIDLDKIGERTIWIDCDVISADGG--TRTAAITGSYIALKL 138

Query: 141 S-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMV 188
           +             P    V    V  +NG  +++    ED    +DL V    D  L+ 
Sbjct: 139 AVKKALENKKFEEDPIVSKVAAISVGKVNGVKLVDLDFKEDSNADVDLNVVMNDDFQLIE 198

Query: 189 ELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
                +    S + + + ++        + +    L +
Sbjct: 199 IQGTGEKDTFSIEELNEFLLGAKRCIGEIFDYFEILEQ 236


>gi|78211822|ref|YP_380601.1| RNAse PH [Synechococcus sp. CC9605]
 gi|123578898|sp|Q3AMY6|RNPH_SYNSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78196281|gb|ABB34046.1| ribonuclease PH [Synechococcus sp. CC9605]
          Length = 247

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 22/246 (8%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R DGR  E +R  S     +     S +   G T  +  V L    + +      G  
Sbjct: 6   EHRTDGRRPEQLRPFSVTWNPMGFALSSLVVHTGRTAVLCSVCL----EGKVPRWRKGEG 61

Query: 371 RNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                  Y  LP +T +         S R     RL  R++  V+        TL I  +
Sbjct: 62  LGWLSAEYRLLPGSTPQRQSRELMKLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCD 121

Query: 429 ITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILS 477
           + ++D  +  A++ G+ LA       L++ GV    P+   VA +++GLV    D   L 
Sbjct: 122 VIQADAGTRTASITGAWLALDQACRSLVEQGVLEQSPLVDQVAAVSVGLV----DGQALL 177

Query: 478 DISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D+   ED    +D  V     G +  +Q   +    S + +   L  A+ G   ++    
Sbjct: 178 DLDYSEDSRAEVDLNVVQAGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLSSLMQAQR 237

Query: 537 KVLSES 542
           +  +E 
Sbjct: 238 QAFTEH 243



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 27/220 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +++   G T VL +V  +  +   + G+    L+  Y+      G  P    R   
Sbjct: 29  FALSSLVVHTGRTAVLCSVCLEGKVPRWRKGEGLGWLSAEYRLLP---GSTPQRQSRELM 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL-- 138
           + +     I R+I RS+R +       E    +  +V+Q D        S+  A  AL  
Sbjct: 86  KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQADAG--TRTASITGAWLALDQ 143

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                    +L   P    V    V  ++GQ +L+    ED   +  L++  +G    +L
Sbjct: 144 ACRSLVEQGVLEQSPLVDQVAAVSVGLVDGQALLDLDYSEDSRAEVDLNVVQAG-DGRLL 202

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
            ++  A     S   + + +         +++A  +    
Sbjct: 203 EIQGTAEGAPFSRSQLNELLDLAEPGLSSLMQAQRQAFTE 242


>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 211

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
             R      Y+    +TGE  R     R+    G   R+     +         + I  +
Sbjct: 33  PDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 92

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+  G 
Sbjct: 93  VLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEEAAGG 148

Query: 489 MDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
               +A       I  ++MD ++       ++ A  QA R    +L+ + +  
Sbjct: 149 PQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQH 201



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 4/164 (2%)

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+      G  +R          +   + ++            +Q+ I V     +   +
Sbjct: 42  YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTY 101

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA+ A+M +G+P    V      +++G  + +    E+      L L +      
Sbjct: 102 AACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQ 161

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + ++E+++  L ED +   +       + V   + ++ +   +E
Sbjct: 162 IALLEMDSR-LHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQE 204


>gi|312968015|ref|ZP_07782226.1| ribonuclease PH [Escherichia coli 2362-75]
 gi|312287274|gb|EFR15183.1| ribonuclease PH [Escherichia coli 2362-75]
          Length = 211

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPS 395
           L   GDT+ +   ++    +E     L G  +      Y  LP +T   +      G   
Sbjct: 2   LVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQG 57

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD----- 450
            R +   RL  RA+   +   A   +T+ +  ++ ++DG +  A++ G+ +AL D     
Sbjct: 58  GRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALNKL 117

Query: 451 ------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503
                    P+   VA +++G+V        + D+   ED     D  V  T+ G I  +
Sbjct: 118 VENGKLKTNPMKGMVAAVSVGIVNGE----AVCDLEYVEDSAAETDMNVVMTEDGRIIEV 173

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           Q   +    +   ++  L  A+ G   I+      
Sbjct: 174 QGTAEGEPFTHEELLTLLALARGGIESIVATQKAA 208



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 21/180 (11%)

Query: 32  LATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88
           L  +G+T VL T   +  +     GQ    +T  Y     +           + +     
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST-HTRNAREAAKGKQGGRT 60

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM------- 139
           + I R+I R++R         E  +    +V+Q D        S+  A  AL        
Sbjct: 61  MEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRTASITGACVALADALNKLV 118

Query: 140 ----LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDA-VLMVELEAN 193
               L   P +G V    V  +NG+ V +    ++     D+ V  T+D  ++ V+  A 
Sbjct: 119 ENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 178


>gi|293393625|ref|ZP_06637935.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
 gi|291423960|gb|EFE97179.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
          Length = 211

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 24/218 (11%)

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPS 395
           L   GDT+ +   T+    ++     L G  +      Y  LP +T   +      G   
Sbjct: 2   LVEFGDTKVLCTATV----EDGVPRFLKGQGQGWITAEYGMLPRSTHSRNAREAAKGKQG 57

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD----- 450
            R +   RL  R++   +       +T+ +  ++ ++DG +  A++ G+ +AL D     
Sbjct: 58  GRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTASITGACVALADALNAL 117

Query: 451 ------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503
                    P+   VA +++G+V        L D+   ED     D  V   + G +  +
Sbjct: 118 VAAGKLKANPMKGMVAAVSVGIVNGE----ALCDLEYVEDSAAETDMNVVMMEDGRMIEV 173

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           Q   +    S + ++  L  A+ G   I       L++
Sbjct: 174 QGTAEGEPFSHDELLALLALARGGIETIFQAQKAALAD 211



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 32  LATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88
           L  +G+T VL T   +  +     GQ    +T  Y     +           + +     
Sbjct: 2   LVEFGDTKVLCTATVEDGVPRFLKGQGQGWITAEYGMLPRST-HSRNAREAAKGKQGGRT 60

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVV---------SMVAASAA 137
           + I R+I RS+R         E  +    +V+Q D  +    +         ++ A  AA
Sbjct: 61  LEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTASITGACVALADALNALVAA 120

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFV 178
             L   P +G V    V  +NG+ + +    ED   +  +++ +
Sbjct: 121 GKLKANPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDMNVVM 164


>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
          Length = 211

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
             R      Y+    +TGE  R     R+    G   R+     +         + I  +
Sbjct: 33  PDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 92

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A V  ++LA+MDAG+P+   V   + G V    D   L+D+S  E+  G 
Sbjct: 93  VLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV----DGTALADLSHVEEAAGG 148

Query: 489 MDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
               +A       I  ++MD ++       ++ A  QA RG   +L+
Sbjct: 149 PQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLD 195



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 52/148 (35%), Gaps = 4/148 (2%)

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+      G  +R          +   + ++            +Q+ I V     +   +
Sbjct: 42  YSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTY 101

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA+ A+M +G+P    V      +++G  + +    E+      L L +      
Sbjct: 102 AACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQ 161

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECK 212
           + ++E+++  L ED +   +       +
Sbjct: 162 IALLEMDSR-LHEDHLEQVLEAAAQAAR 188


>gi|332749902|gb|EGJ80314.1| ribonuclease PH [Shigella flexneri K-671]
          Length = 211

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPS 395
           L   GDT+ +   ++    +E     L G  +      Y  LP +T   +      G   
Sbjct: 2   LVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQG 57

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD----- 450
            R +   RL  RA+   +   A   +T+ +  ++ ++DG +  A++ G+ +AL D     
Sbjct: 58  GRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKL 117

Query: 451 ------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503
                    P+   VA +++G+V        + D+   ED     D  V  T+ G I  +
Sbjct: 118 VENGKLKTNPMKGMVAAVSVGIVNGE----AICDLEYVEDSAAETDMNVVMTEDGRIIEV 173

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           Q   +    +   ++  L  A+ G   I+      
Sbjct: 174 QGTAEGEPFTHEELLTLLALARGGIESIVATQKAA 208



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 21/180 (11%)

Query: 32  LATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88
           L  +G+T VL T   +  +     GQ    +T  Y     +           + +     
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST-HTRNAREAAKGKQGGRT 60

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALM------- 139
           + I R+I R++R         E  +    +V+Q D        S+  A  AL        
Sbjct: 61  MEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGG--TRTASITGACVALADALQKLV 118

Query: 140 ----LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDA-VLMVELEAN 193
               L   P +G V    V  +NG+ + +    ++     D+ V  T+D  ++ V+  A 
Sbjct: 119 ENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAE 178


>gi|33864812|ref|NP_896371.1| ribonuclease PH [Synechococcus sp. WH 8102]
 gi|61216015|sp|Q7U9I1|RNPH_SYNPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33632335|emb|CAE06791.1| ribonuclease PH [Synechococcus sp. WH 8102]
          Length = 249

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 22/245 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR +  +R  S     +     S +   G T  +  V+L    +E       G   
Sbjct: 7   KRADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSL----EEDVPRWRRGNGC 62

Query: 372 NDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 Y  LP +T +         S R     RL  R++  VL   A    TL I  ++
Sbjct: 63  GWLSAEYRLLPGSTPQRQSRELMKLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDV 122

Query: 430 TESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSD 478
            ++D  +  A++ G+ +AL  A             PI + +A +++GL+    D   L D
Sbjct: 123 IQADAGTRTASITGAWIALRRACDLLRSQGVLTQDPIRQQLAAVSVGLI----DGTPLLD 178

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +   ED    +D  V     G +  +Q   +    S + +   L  A+ G   ++     
Sbjct: 179 LDYSEDSRADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRH 238

Query: 538 VLSES 542
            L+ +
Sbjct: 239 ALATA 243



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 26/222 (11%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +++   G T VL +V  +  +   + G     L+  Y+      G  P    R   
Sbjct: 29  FALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSAEYRLLP---GSTPQRQSRELM 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAAL-- 138
           + +     I R+I RS+R +       E    +  +V+Q D        S+  A  AL  
Sbjct: 86  KLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQADAG--TRTASITGAWIALRR 143

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLM 187
                    +L+  P    +    V  I+G  +L+    ED +  +DL  V+     +L 
Sbjct: 144 ACDLLRSQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSEDSRADVDLNVVTAGDGRLLE 203

Query: 188 VELEANQ--LSEDVVLDAIIFGHNECKPVIEAI-SKLAKMCA 226
           ++  A Q   S   +   +    +  + +++     LA    
Sbjct: 204 LQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRHALATAAG 245


>gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279]
 gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279]
          Length = 238

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 23/231 (9%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR ++ +R ++ ++G +    GS+L   G T+ +V V+L           +SG + 
Sbjct: 2   KRKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDG----VPRHVSG-RE 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
              M  YN LP +T E         S R     R   RA    L  +     T+ I +++
Sbjct: 57  GWLMAEYNLLPRSTKERKERERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADV 116

Query: 430 TESDGSSSMATVCGSSLAL---MDA--------GVPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG + +A++ G   AL   MD           P+++  A +++G + D     +L D
Sbjct: 117 IQADGGTRVASLLGGYAALHMAMDRLVNQGKLDEWPLTEF-AAVSVGWMSDDS---LLLD 172

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGR 528
           ++  ED     D  V  T SG I  +    +   +  +     L+      
Sbjct: 173 LTQIEDENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHI 223



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 26/199 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV----YDRSLKDGQDFFPLTVNYQERTYA 69
           RPL L  G +   ++G+ L   G T VL  V       R +   + +  L   Y     +
Sbjct: 13  RPLTLRMGYV-HYAEGSALVELGHTKVLVNVSLTDGVPRHVSGREGW--LMAEYNLLPRS 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPH 127
             +      R   + +     I R + R+ R         N+T VI  +V+Q D      
Sbjct: 70  TKE---RKERERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQADGG--TR 124

Query: 128 VVSMVAASAALMLS-------GLPFEGPV---VGAQVDYI-NGQYVLNPRLDEDQGS-LD 175
           V S++   AAL ++       G   E P+       V ++ +   +L+    ED+ +  D
Sbjct: 125 VASLLGGYAALHMAMDRLVNQGKLDEWPLTEFAAVSVGWMSDDSLLLDLTQIEDENAWAD 184

Query: 176 LFVSGTQDAVLMVELEANQ 194
           L V  TQ   ++    A +
Sbjct: 185 LTVVATQSGDIIELHGAGE 203


>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
           infestans T30-4]
 gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
           infestans T30-4]
          Length = 777

 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 98/264 (37%), Gaps = 23/264 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE------ 358
             +    +R+DGR SE VR I  + GL  R  GSS + +G+T+ + VV  G RE      
Sbjct: 18  EFISVAGLRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVV-YGPRELRTAAA 76

Query: 359 -----DEQYVDSLSG------TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
                    V + SG        R      +     AT E     +  R+++      ++
Sbjct: 77  GSVNSGAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQ 136

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
                +         + I  ++  +DG    A++   +LAL+DAG+ ++  V   + G +
Sbjct: 137 IFEACIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYL 196

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           +      +L D++  E+        +A          + M+   +   +    ++ A  G
Sbjct: 197 QQT----MLCDLNYAEEVARAPQMIIALNPRTQKLNLLQMECK-LQLELFESLMEVATEG 251

Query: 528 RLHILNEMSKVLSESRLQLGEFTP 551
              I + +     + R       P
Sbjct: 252 CNQIYDLLQNATMDRRSVSTTRGP 275



 Score = 45.3 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 82/238 (34%), Gaps = 45/238 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG-------------------- 53
           R ++   G  +R  DG+     G T V+A V   R L+                      
Sbjct: 36  RRIRTRFGLFSR-VDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAAAVGTGSGNAA 94

Query: 54  ---QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK----- 105
              Q    +   + +  +A  +      R+  R  + + L   +   +++ +F       
Sbjct: 95  SNTQPRATVNCEFTQAAFATSE------RKPQRSGDRKKLEMSL---AVKQIFEACIQTQ 145

Query: 106 -CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLN 164
              +++  + + V+  D    P   S+ A + AL+ +G+     VV +   Y+    + +
Sbjct: 146 LYPRSQIDIFVQVLHADGGELP--ASINAITLALIDAGIALNDFVVASSAGYLQQTMLCD 203

Query: 165 PRLDEDQGSL-DLFVS--GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
               E+      + ++       + ++++E   L  ++    +      C  + + + 
Sbjct: 204 LNYAEEVARAPQMIIALNPRTQKLNLLQMECK-LQLELFESLMEVATEGCNQIYDLLQ 260


>gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514]
 gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514]
          Length = 255

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 17/200 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR- 371
           R DGR    +R +  Q  +     GS+L   G+T+ I  VT+    +E     +      
Sbjct: 18  RTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTV----EESVPRWMKEQNVI 73

Query: 372 -NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                  Y+ LP +T +  +     G    R     RL  RA+   +        T+ + 
Sbjct: 74  GGWITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVD 133

Query: 427 SEITESDGSSSMATVCGSSLA-------LMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            ++ ++DG +  A + G+ +A       LM  G     P+      +     +   L D+
Sbjct: 134 CDVLQADGGTRTAAITGAYVALSLAVRKLMSEGKLKESPMLHAVAAVSVGVVNRQPLLDL 193

Query: 480 SGDEDHLGHMDFKVAGTDSG 499
              ED    +D  +     G
Sbjct: 194 CYVEDAAAAVDLNLVMNSVG 213



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP------LTVNYQERT 67
           RPL+ +   IA  + G+ L  +G T V+  V                    +T  Y    
Sbjct: 28  RPLRFQ-NHIAPYATGSTLVEWGNTRVICGVTV-EESVPRWMKEQNVIGGWITAEYSMLP 85

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESS 125
           Y+  +     + +  +       I R+I R++R      K       V  +V+Q D    
Sbjct: 86  YSTLQRKQRDISK-GKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVDCDVLQADGG-- 142

Query: 126 PHVVSMVAASAALMLS 141
               ++  A  AL L+
Sbjct: 143 TRTAAITGAYVALSLA 158


>gi|88808003|ref|ZP_01123514.1| Ribonuclease PH [Synechococcus sp. WH 7805]
 gi|88788042|gb|EAR19198.1| Ribonuclease PH [Synechococcus sp. WH 7805]
          Length = 340

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 89/240 (37%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R  + +   +     S +   G T  +  V      ++            
Sbjct: 105 RKDGRQASELRPFAVEWDPMGFALSSVIVRTGRTAVLCSV----CHEQGVPRWRRDQGLG 160

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T E  R      S R     RL  R++   L   A    TL +  ++ 
Sbjct: 161 WLSAEYRLLPGSTPERQRREWLKLSGRTQEIQRLIGRSLRAALSMEALGENTLLVDCDVI 220

Query: 431 ESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A++ G+ LAL  A             P+   VA +++GL++       L D+
Sbjct: 221 QADAGTRTASITGAWLALHHACASLVSQGLIPANPVRAQVAAVSVGLLQGE----ALLDL 276

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  V    SG +  +Q   +    S   + + L +A+ G   ++   ++ 
Sbjct: 277 DYSEDSQADVDLNVVMNASGELLELQGTAEGATFSRQQLNLLLDRAEPGLKQLMRAQNEA 336



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 27/217 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRS-LKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRES 82
            +  +V+   G T VL +V +++   +  +D     L+  Y+      G  P    R   
Sbjct: 126 FALSSVIVRTGRTAVLCSVCHEQGVPRWRRDQGLGWLSAEYRLLP---GSTPERQRREWL 182

Query: 83  RPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM- 139
           + +     I R+I RS+R         +N   V  +V+Q D        S+  A  AL  
Sbjct: 183 KLSGRTQEIQRLIGRSLRAALSMEALGENTLLVDCDVIQADAG--TRTASITGAWLALHH 240

Query: 140 ----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                     +   P    V    V  + G+ +L+    ED      L++ ++ + + +L
Sbjct: 241 ACASLVSQGLIPANPVRAQVAAVSVGLLQGEALLDLDYSEDSQADVDLNVVMNASGE-LL 299

Query: 187 MVELEANQLS--EDVVLDAIIFGHNECKPVIEAISKL 221
            ++  A   +     +   +       K ++ A ++ 
Sbjct: 300 ELQGTAEGATFSRQQLNLLLDRAEPGLKQLMRAQNEA 336


>gi|270717143|ref|ZP_06223257.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
          HK1212]
 gi|270315521|gb|EFA27748.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
          HK1212]
          Length = 82

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/82 (58%), Positives = 61/82 (74%)

Query: 10 EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA 69
          ++    + LETG IARQ+  AV+A+  +T V  TVV  + +K+GQDFFPLTVNYQERTYA
Sbjct: 1  KYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYA 60

Query: 70 VGKIPGGYLRRESRPTENEILI 91
           GKIPGG+ +RE RP+E E LI
Sbjct: 61 AGKIPGGFFKREGRPSEGETLI 82


>gi|289644629|ref|ZP_06476695.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
 gi|289505557|gb|EFD26590.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
          Length = 234

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 79/227 (34%), Gaps = 11/227 (4%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ++   G      GS+L   G T+ +   ++     E       G+        Y+ LP A
Sbjct: 1   MNITRGWQDHAEGSALIEFGRTRVLCAASVT----EGVPRWRKGSGLGWVTAEYSMLPRA 56

Query: 385 TGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           T       S  G    R     RL  R++   +        T+ I  ++  +DG +  A+
Sbjct: 57  TNTRNDRESVRGRIGGRTHEISRLIGRSLRTCIDLKILGENTIAIDCDVLVADGGTRTAS 116

Query: 441 VCGSSLALMDAGVPISKPVAGIA--MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
           + G+ +AL DA   + +P A I     +         L D++ DED     D  V  T  
Sbjct: 117 ITGAYVALSDACGWLGRPDALIRSVAAVSVGVVAGRPLLDLAYDEDSGADTDMNVICTGD 176

Query: 499 -GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            G   +Q   +       ++   L  A  G   +       L+  R 
Sbjct: 177 GGFVEVQGTAEGLPFDRAMLDQLLDLAVGGCARLTEVQRAALAGPRP 223



 Score = 41.4 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+ L  +G T VL        +   + G     +T  Y     A          R  R
Sbjct: 11  AEGSALIEFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATNTRNDRESVR-GR 69

Query: 84  PTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM 139
                  ISR+I RS+R          N   +  +V+  D        S+  A  AL 
Sbjct: 70  IGGRTHEISRLIGRSLRTCIDLKILGENTIAIDCDVLVADGG--TRTASITGAYVALS 125


>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 244

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 8/236 (3%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R DGR    +R + ++ G+ +   GS+    G T+ I +V  G RE  +  D      
Sbjct: 12  GLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVK-GPREVTRRQD--RKYD 68

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                  YN  P +  E  +     R+ +      +      +         + I   + 
Sbjct: 69  TGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVI 128

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           +SDG      +  +SLAL+DAGV +S  V   + G +    D + + D++  E  LG   
Sbjct: 129 QSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYL----DGMPVMDLNYVEQALGGPY 184

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             VA        +        +   I    L+ A      +   +   + E    L
Sbjct: 185 LPVAVLPEKDKLLLAK-MESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEHAGAL 239



 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 89/210 (42%), Gaps = 19/210 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G+T ++A V   R +   QD       +   Y    ++  +      R++ 
Sbjct: 36  ADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSE------RKKR 89

Query: 83  RPTENE-ILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
           RPTE + + I+  +        +     + +  + ++V+Q D    P  V + AAS AL+
Sbjct: 90  RPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLP--VGINAASLALV 147

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS---LDLFVSGTQDAVLMVELEANQLS 196
            +G+     VV     Y++G  V++    E       L + V   +D +L+ ++E+  L 
Sbjct: 148 DAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESR-LP 206

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            ++  + +    + C+ V E +    K  A
Sbjct: 207 LEIFEEVLRAATDACQQVHEVLRAAVKEHA 236


>gi|73974732|ref|XP_857418.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 3 [Canis familiaris]
          Length = 226

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
             R      Y+    +TGE  R     R+    G   R+     +         + I  +
Sbjct: 48  PDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQ 107

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG +  A V  ++LA++DAG+P+   V   + G V +      L+D+S  E+  G 
Sbjct: 108 VLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNT----ALADLSHVEEAAGG 163

Query: 489 MDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
               +A       I  ++MD ++       ++ A  +A R    +L+ + +  
Sbjct: 164 PQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQH 216



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 58/164 (35%), Gaps = 4/164 (2%)

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
           Y+      G  +R          +   + ++            +Q+ I V     +   +
Sbjct: 57  YSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTY 116

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA+ A++ +G+P    V      +++   + +    E+      L L +      
Sbjct: 117 AACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGPQLALALLPASGQ 176

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + ++E++A  L ED +   +       + V   + ++ +   +E
Sbjct: 177 IALLEMDAR-LHEDHLEQVLEAAARAARDVHTVLDRVVRQHVRE 219


>gi|113954193|ref|YP_729551.1| ribonuclease PH [Synechococcus sp. CC9311]
 gi|113881544|gb|ABI46502.1| ribonuclease PH [Synechococcus sp. CC9311]
          Length = 241

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 88/248 (35%), Gaps = 22/248 (8%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R DGR    +R  S     +     S +   G T  +  V       E       
Sbjct: 1   MTDTSRNDGRRPGDLRPFSISWDPMGFALSSVIIHSGRTTVLCSV----CHQEGVPRWRK 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
              +      Y  LP +T E         S R     RL  R++   +   A    TLRI
Sbjct: 57  DQGKGWLSAEYRLLPGSTPERQNRELLKLSGRTQEIQRLIGRSLRAAIDMEALGENTLRI 116

Query: 426 VSEITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFI 474
             ++ ++D  +  A + GS +A       L+  GV    P+   VA +++G++       
Sbjct: 117 DCDVIQADAGTRTAAISGSWVALQRACERLVQQGVLNTNPVQSQVAAVSVGVIHK----R 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            L D+   ED    +D  V     G +  +Q   +    S + +   L  A+ G   I++
Sbjct: 173 PLLDLDYSEDSQADVDLNVVMNGEGHLLELQGTAEGAPFSRHQLNDLLDLAEPGLKKIMD 232

Query: 534 EMSKVLSE 541
           +    LS 
Sbjct: 233 DQRAALSA 240



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 27/214 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +V+   G T VL +V +   +   +  Q    L+  Y+      G  P    R   
Sbjct: 27  FALSSVIIHSGRTTVLCSVCHQEGVPRWRKDQGKGWLSAEYRLLP---GSTPERQNRELL 83

Query: 83  RPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM- 139
           + +     I R+I RS+R         +N  ++  +V+Q D        ++  +  AL  
Sbjct: 84  KLSGRTQEIQRLIGRSLRAAIDMEALGENTLRIDCDVIQADAG--TRTAAISGSWVALQR 141

Query: 140 ----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                     L+  P +  V    V  I+ + +L+    ED      L++ ++G +  +L
Sbjct: 142 ACERLVQQGVLNTNPVQSQVAAVSVGVIHKRPLLDLDYSEDSQADVDLNVVMNG-EGHLL 200

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAI 218
            ++  A     S   + D +       K +++  
Sbjct: 201 ELQGTAEGAPFSRHQLNDLLDLAEPGLKKIMDDQ 234


>gi|23012215|ref|ZP_00052356.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 150

 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/106 (62%), Positives = 79/106 (74%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +KIASS    I+AA   IRSI   PE   IY G +VK+M+FGAFV+F GA+DGLVHIS+L
Sbjct: 1   MKIASSDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISEL 60

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + +RVAK  DVVKEG  V VK L  D+RGKI+LSMKVVDQ TG+ I
Sbjct: 61  AAQRVAKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDI 106


>gi|256372516|ref|YP_003110340.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009100|gb|ACU54667.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
          Length = 238

 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 24/240 (10%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           + R  GR +  +R ++      +   GS L   G T  +  V+L    +E+    L G  
Sbjct: 2   ERRPVGRGAAELRPVAITPDFTEMAPGSVLMRMGRTAVLCTVSL----EERVPAWLRGQG 57

Query: 371 RNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           R      Y  LP +T   +      G    R +   RL  RA+  V+       + L + 
Sbjct: 58  RGWVSAEYALLPGSTPTRTAREAVRGRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVD 117

Query: 427 SEITESDGSSSMATVCGSSLAL-----------MDAGVPISKPVAGIAMGLVKDGDDFII 475
            ++ ++DG +  A + G  LAL           +     ++  +A +++G+V    D   
Sbjct: 118 CDVLQADGGTRTAAITGGFLALERALERLAEGGLVQPAALTGRLAAVSVGVV----DGEP 173

Query: 476 LSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L D+  DED    +D  V  TD G    +Q   +    ++  +V  L+ A+RG   +L  
Sbjct: 174 LLDLDYDEDSRADVDMNVVMTDGGRYVEVQGAAEGAPFAKATLVELLKLAERGIGELLER 233



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 24/177 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRR--E 81
           + G+VL   G T VL TV  +  +     GQ    ++  Y       G  P    R    
Sbjct: 26  APGSVLMRMGRTAVLCTVSLEERVPAWLRGQGRGWVSAEY---ALLPGSTPTRTAREAVR 82

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL- 138
            R     + I R+I R++R +       E Q++   +V+Q D        ++     AL 
Sbjct: 83  GRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVDCDVLQADGG--TRTAAITGGFLALE 140

Query: 139 ----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
                     ++      G +    V  ++G+ +L+   DED +  +D+ V  T   
Sbjct: 141 RALERLAEGGLVQPAALTGRLAAVSVGVVDGEPLLDLDYDEDSRADVDMNVVMTDGG 197


>gi|15806593|ref|NP_295308.1| ribonuclease PH [Deinococcus radiodurans R1]
 gi|21759421|sp|Q9RU11|RNPH_DEIRA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|6459349|gb|AAF11146.1|AE002002_4 ribonuclease PH [Deinococcus radiodurans R1]
          Length = 246

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 22/237 (9%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           +GRD+ T R +S Q G+     GS+    G T+ +  VTL    D++    + G +    
Sbjct: 10  EGRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTL----DDKPAPHMRGKKEGWL 65

Query: 375 MMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              Y+ LP +T +         + R     RL  RA+   +        TL +  ++  +
Sbjct: 66  TAEYSMLPRSTTDRQARERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVA 125

Query: 433 DGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           DG + +A+V     AL D           +  PI   V  I++GL+ D     +  D+  
Sbjct: 126 DGGTRVASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDE----LRVDLDY 181

Query: 482 DEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +ED +   D  V  TD+G +  +Q   ++G I+ +     L         ++ E++ 
Sbjct: 182 EEDKVARADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSCGVASVQDVMRELTP 238



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+ ++ G +   + G+     G T +LATV  D              LT  Y     + 
Sbjct: 18  RPVSVQRG-VNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYSMLPRS- 75

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPHV 128
                   R  +        I R++ R++R     + +KN+T  V  +V+  D      V
Sbjct: 76  --TTDRQARERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG--TRV 131

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S++A  AAL            LS  P    V    V  I  +  ++   +ED+    DL
Sbjct: 132 ASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDKVARADL 191

Query: 177 FVSGTQDAVLMVELEANQL 195
            V  T   +L+      +L
Sbjct: 192 NVIATDTGLLVEVQGGAEL 210


>gi|255027710|ref|ZP_05299696.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J2-003]
          Length = 137

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/116 (42%), Positives = 71/116 (61%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           G K++I+ DGTV IAS   A    A  +I  I    EV ++Y G+V ++  FGAFV    
Sbjct: 1   GVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFK 60

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DGLVHIS+L+ ERV K  D++K GD V VK+++ D +G++ LS K + +   +P
Sbjct: 61  GTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQP 116


>gi|269218709|ref|ZP_06162563.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211820|gb|EEZ78160.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 245

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 26/235 (11%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +S   G L    GS L   G T  + V +      E        T        Y+ L
Sbjct: 1   MRPVSISRGWLDAGEGSVLVSFGKTTVLCVASFT----EGVPRWRKDTGLGWVTAEYSML 56

Query: 382 PCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           P AT E S      G    R     RL  RA+   +   A    T+++  ++  +DG + 
Sbjct: 57  PRATDERSARESVKGKIGGRTHEISRLIGRALRACVDMRALGENTIQLDCDVLRADGGTR 116

Query: 438 MATVCGSSLALMD-------AGV--P----ISKPVAGIAMGLVKDGDDFIILSDISGDED 484
            A++ G+  AL D        G+  P    +S  V+ +++G+V    D   + D+  +ED
Sbjct: 117 TASITGAFAALADAVDWAVGEGIVKPRRPVLSDTVSAVSVGVV----DGRPVLDLPYEED 172

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  V  T +G    +Q   +    S   +   L  A  G  H+     + 
Sbjct: 173 SRADTDMNVVATGAGQFIEIQGTAERAPFSRGELGELLDLAAIGTAHLAAVQKEA 227



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 35/227 (15%)

Query: 14  RPLKLETGRIARQSD-GAVLATYGETVVLATV-VYDRSLKDGQDFFP--LTVNYQERTYA 69
           RP+ +  G +   +  G+VL ++G+T VL      +   +  +D     +T  Y     A
Sbjct: 2   RPVSISRGWL--DAGEGSVLVSFGKTTVLCVASFTEGVPRWRKDTGLGWVTAEYSMLPRA 59

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPH 127
             +       +  +       ISR+I R++R          N  Q+  +V++ D      
Sbjct: 60  TDERSARESVK-GKIGGRTHEISRLIGRALRACVDMRALGENTIQLDCDVLRADGG--TR 116

Query: 128 VVSMVAASAALMLS-------GL--P----FEGPVVGAQVDYINGQYVLNPRLDED---Q 171
             S+  A AAL  +       G+  P        V    V  ++G+ VL+   +ED    
Sbjct: 117 TASITGAFAALADAVDWAVGEGIVKPRRPVLSDTVSAVSVGVVDGRPVLDLPYEEDSRAD 176

Query: 172 GSLDLFVSGTQDAVLMVELEA-------NQLSEDVVLDAIIFGHNEC 211
             +++  +G    +  ++  A        +L E + L AI   H   
Sbjct: 177 TDMNVVATGAGQFI-EIQGTAERAPFSRGELGELLDLAAIGTAHLAA 222


>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102 [Chlorella variabilis]
          Length = 241

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 7/227 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  +++R+DGR  + +R + A++G+L    GS+LF  G+T+ +  V  G +  EQ   
Sbjct: 1   EYVSPERLRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAV-FGPKPVEQR-- 57

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S    +R      Y     +TGE  R G   RR    G   R  +   +         + 
Sbjct: 58  SQEDERRAIVKCEYAMASFSTGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQID 117

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG +  A +  + +A   A +P+   VA  A G ++       L D++  ED
Sbjct: 118 IYVQVLQADGGTRCACINAACMAAAAAAIPMRDLVASCAAGYLEST----ALLDLNYMED 173

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
             G  D  VA   +    + +  +   +S       L+    G   +
Sbjct: 174 SGGGPDVAVAIHANHEDRVVLLQQDNRLSIETFEEVLELGVAGCRAV 220



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 80/216 (37%), Gaps = 17/216 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYA 69
           R L+ E G ++  +DG+ L   G T VLA V   + +    ++ +    +   Y   +++
Sbjct: 19  RQLRAELGVLSS-ADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIVKCEYAMASFS 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPH 127
            G+                  I   I  ++          +++  + + V+Q D      
Sbjct: 78  TGERRRRGK-----ADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVLQADGG--TR 130

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA  A   + +P    V      Y+    +L+    ED G    + + +    + 
Sbjct: 131 CACINAACMAAAAAAIPMRDLVASCAAGYLESTALLDLNYMEDSGGGPDVAVAIHANHED 190

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            +++  + N+LS +   + +  G   C+ V   + +
Sbjct: 191 RVVLLQQDNRLSIETFEEVLELGVAGCRAVAAFMRQ 226


>gi|269216890|ref|ZP_06160744.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
 gi|269129697|gb|EEZ60781.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
          Length = 246

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 23/241 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R    +RD++ + G+++   GS L   GDT  +V  T+    +++      G+   
Sbjct: 11  RVDNRLDRAMRDVTLERGVMKNASGSCLVKFGDTHVLVSATI----EDRVAGWRKGSGLG 66

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR--REIGHGRLARRAIHPVLPQTAQ-FPYTLRIVSEI 429
                Y  LP A  + +      R  R     RL  R++  V          T+ I  ++
Sbjct: 67  WLTAEYAMLPAAGTKRTPRETKGRKGRSQEIERLIGRSLRNVCDMGRMGGEVTMTIDCDV 126

Query: 430 TESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSD 478
            ++DG +  A++ G+ +A  DA             P+   VA +++G+V       +L D
Sbjct: 127 LQADGGTRTASITGAWVAAWDAFEMWRMAGRCKTNPLFGQVAAVSVGMV----GGRLLLD 182

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +   ED    +D  V     G +  +Q   +    S   +   L  A+ G   +L +   
Sbjct: 183 LDYREDSQAEIDMNVVMNGKGELVEVQGTGEQVSFSRATLNEMLDMAQAGIDGLLEKQRA 242

Query: 538 V 538
            
Sbjct: 243 A 243



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 34/220 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R + LE G + + + G+ L  +G+T VL +   +  +   + G     LT  Y     A 
Sbjct: 21  RDVTLERGVM-KNASGSCLVKFGDTHVLVSATIEDRVAGWRKGSGLGWLTAEYAMLPAAG 79

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC-YKNET--QVIINVMQHDLESSP 126
             + P     R+ R       I R+I RS+R +        E    +  +V+Q D     
Sbjct: 80  TKRTPRETKGRKGR----SQEIERLIGRSLRNVCDMGRMGGEVTMTIDCDVLQADGG--T 133

Query: 127 HVVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYVLNPRLDED---QG 172
              S+  A  A   +             P  G V    V  + G+ +L+    ED   + 
Sbjct: 134 RTASITGAWVAAWDAFEMWRMAGRCKTNPLFGQVAAVSVGMVGGRLLLDLDYREDSQAEI 193

Query: 173 SLDLFVSGTQDAVLMVELEANQL-----SEDVVLDAIIFG 207
            +++ ++G +  ++ V+    Q+     + + +LD    G
Sbjct: 194 DMNVVMNG-KGELVEVQGTGEQVSFSRATLNEMLDMAQAG 232


>gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
 gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
          Length = 235

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 23/224 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +S   G      GS+L   G T+ +V V+L           +   +  
Sbjct: 3   RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSLTDG----VPRHVRP-REG 57

Query: 373 DFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
             M  YN LP +T E         S R     R   RA   VL  ++    T+ I +++ 
Sbjct: 58  WLMTEYNLLPRSTKERKERERQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVIDADVL 117

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG + +A++ G   AL  A             P+ +  A I++G   +     IL D+
Sbjct: 118 QADGGTRVASLIGGYAALHQALDKMVRSGALDEWPLQEF-AAISLGWFGEE---RILLDL 173

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQ 522
           +  ED     D  V  T  G +  +    +   + + +    L+
Sbjct: 174 THVEDENAWADLTVVATQGGEVIEVHGGGEGRAVPQPVYKQMLE 217



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 29/229 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV----YDRSLKDGQDFFPLTVNYQERTYA 69
           RPL + TG     ++G+ L   G T VL TV       R ++  + +  L   Y     +
Sbjct: 13  RPLSIHTGYNLY-AEGSALVELGHTKVLVTVSLTDGVPRHVRPREGW--LMTEYNLLPRS 69

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPH 127
             +      R   + +     I R + R+ R +            +  +V+Q D      
Sbjct: 70  TKE---RKERERQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVIDADVLQADGG--TR 124

Query: 128 VVSMVAASAALML-------SGLPFEGPV---VGAQVDYINGQYV-LNPRLDEDQGS-LD 175
           V S++   AAL         SG   E P+       + +   + + L+    ED+ +  D
Sbjct: 125 VASLIGGYAALHQALDKMVRSGALDEWPLQEFAAISLGWFGEERILLDLTHVEDENAWAD 184

Query: 176 LFVSGTQDA-VLMVE--LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           L V  TQ   V+ V    E   + + V    +  G      ++  I + 
Sbjct: 185 LTVVATQGGEVIEVHGGGEGRAVPQPVYKQMLETGLGFIPELVRRIHQA 233


>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
 gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
          Length = 245

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 8/242 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R I+ Q+ +L    GS++F  G+T+ +  V  G         
Sbjct: 2   EFVSPEGLRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAV-FGPH--AVTRR 58

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S    +    +  Y+    +TGE  R G   RR      + R  +   +         + 
Sbjct: 59  SELREEGALVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  ++ ++DG +  A +  + LAL  AGVP+   VAG A G +    D   L D++  ED
Sbjct: 119 VYVQVLQADGGTRCAAINAAVLALAAAGVPLRDLVAGCAAGYL----DGTALLDLNYTED 174

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA     + ++ +      +  +     ++ A+ G   I   M   L E   
Sbjct: 175 SGGGPDLCVALAPR-LDSLYLVQMDNRLPVDTFQAVMELAREGCRTISGVMRAALLEHTQ 233

Query: 545 QL 546
           +L
Sbjct: 234 RL 235



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 17/198 (8%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYAVGKIPGGYLRRE 81
            +DG+ +   G T VLA V    ++    +       +   Y    ++ G+         
Sbjct: 31  NADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALVVCEYSMAAFSTGERRRRGK--- 87

Query: 82  SRPTENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
                    +S +I  ++          +++  V + V+Q D        ++ AA  AL 
Sbjct: 88  --GDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVLQADGG--TRCAAINAAVLALA 143

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLS 196
            +G+P    V G    Y++G  +L+    ED G    L + ++   D++ +V+++ N+L 
Sbjct: 144 AAGVPLRDLVAGCAAGYLDGTALLDLNYTEDSGGGPDLCVALAPRLDSLYLVQMD-NRLP 202

Query: 197 EDVVLDAIIFGHNECKPV 214
            D     +      C+ +
Sbjct: 203 VDTFQAVMELAREGCRTI 220


>gi|297622726|ref|YP_003704160.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
 gi|297163906|gb|ADI13617.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
          Length = 236

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 23/199 (11%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ--RND 373
           GR    +R+I    G  +   GS+L   GDT+ +  VT+    + +    L G +     
Sbjct: 4   GRQPFQLREIRVTPGYNRFAEGSALVEWGDTRVLATVTV----ENKLPPHLRGKKGRVGW 59

Query: 374 FMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
               Y  LP +T E ++        R +   RL  R++  V   T     TL +  ++ +
Sbjct: 60  LTAEYAMLPRSTAERTQRERLYAGGRSLEIQRLIGRSLRSVTDLTLFHGQTLTVDVDVLQ 119

Query: 432 SDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSDIS 480
           +DG +  A +     AL  A             P++  VA +++G+V+       L D+ 
Sbjct: 120 ADGGTRCAGILAGYAALHHAAGRLVRKGALDEWPLTHEVAAVSVGVVRGE----TLLDLD 175

Query: 481 GDEDHLGHMDFKVAGTDSG 499
             ED    +D  V  T  G
Sbjct: 176 FHEDAAAEIDLNVVATADG 194



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 22/218 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAV--G 71
           R +++  G   R ++G+ L  +G+T VLATV  +  L          V +    YA+   
Sbjct: 11  REIRVTPG-YNRFAEGSALVEWGDTRVLATVTVENKLPPHLRGKKGRVGWLTAEYAMLPR 69

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN--ETQVIINVMQHDLESSPHVV 129
                  R         + I R+I RS+R +      +     V ++V+Q D        
Sbjct: 70  STAERTQRERLYAGGRSLEIQRLIGRSLRSVTDLTLFHGQTLTVDVDVLQADGG--TRCA 127

Query: 130 SMVAASAAL-----------MLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLF 177
            ++A  AAL            L   P    V    V  + G+ +L+    ++    +DL 
Sbjct: 128 GILAGYAALHHAAGRLVRKGALDEWPLTHEVAAVSVGVVRGETLLDLDFHEDAAAEIDLN 187

Query: 178 VSGTQD-AVLMVELEANQLSEDV--VLDAIIFGHNECK 212
           V  T D  ++ V+    +   D    ++ +  G +  +
Sbjct: 188 VVATADGKLVEVQGSGEERPIDAGRYVELVAQGISAVQ 225


>gi|148238656|ref|YP_001224043.1| ribonuclease PH [Synechococcus sp. WH 7803]
 gi|147847195|emb|CAK22746.1| Ribonuclease PH [Synechococcus sp. WH 7803]
          Length = 241

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 92/245 (37%), Gaps = 22/245 (8%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++   R DGR +  +R  + +   +     S +   G T  +  V      +E       
Sbjct: 1   MNTTSRKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSV----CHEEGVPRWRR 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                     Y  LP +T E  R      S R     RL  R++   L   A    TL I
Sbjct: 57  DQGLGWLSAEYRLLPGSTPERQRREWLKLSGRTQEIQRLIGRSLRAALSMEALGENTLLI 116

Query: 426 VSEITESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFI 474
             ++ ++D  +  A+V G+ LAL +A             P+   VA +++GL+       
Sbjct: 117 DCDVIQADAGTRTASVTGAWLALQNACESLVKQGVLQSNPVCSQVAAVSVGLLGGE---- 172

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            L D+   ED    +D  V   DSG +  +Q   +    S   + + L +A+ G   +++
Sbjct: 173 ALLDLDYSEDSQADVDLNVVMNDSGELLELQGTAEGKAFSRQQLNLLLDRAEPGLKQLMD 232

Query: 534 EMSKV 538
              + 
Sbjct: 233 AQKEA 237



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 74/216 (34%), Gaps = 25/216 (11%)

Query: 26  QSDGAVLATYGETVVLATVVYDRS-LKDGQDFFP--LTVNYQERTYAVGKIPGGYLRRES 82
            +  +V+   G T VL +V ++    +  +D     L+  Y+      G  P    R   
Sbjct: 27  FALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSAEYRLLP---GSTPERQRREWL 83

Query: 83  RPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM- 139
           + +     I R+I RS+R         +N   +  +V+Q D        S+  A  AL  
Sbjct: 84  KLSGRTQEIQRLIGRSLRAALSMEALGENTLLIDCDVIQADAG--TRTASVTGAWLALQN 141

Query: 140 ----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDAVLMV 188
                     L   P    V    V  + G+ +L+    ED Q  +DL V       L+ 
Sbjct: 142 ACESLVKQGVLQSNPVCSQVAAVSVGLLGGEALLDLDYSEDSQADVDLNVVMNDSGELLE 201

Query: 189 E---LEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
                E    S   +   +       K +++A  + 
Sbjct: 202 LQGTAEGKAFSRQQLNLLLDRAEPGLKQLMDAQKEA 237


>gi|318042724|ref|ZP_07974680.1| ribonuclease PH [Synechococcus sp. CB0101]
          Length = 244

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 22/246 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R        +     S     G T  I  V L    +E       G+ + 
Sbjct: 7   RSDGRSPSDLRPTRFDWDPMGFALSSVTVHTGRTAVICSVCL----EEDVPKWRQGSGKG 62

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T           S R     RL  R++   L   A    +L I  ++ 
Sbjct: 63  WLSADYRLLPASTPSRQPRELMKLSGRTQEIQRLIARSLRACLDLEALGERSLHIDCDVL 122

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A++ G+  AL              G P+ + VA +++GLV        L D+
Sbjct: 123 QADAGTRSASITGAWAALALGLRRLEARGVLNGTPMLEQVAAVSVGLVGSQ----ALLDL 178

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  V     G +  +Q   +    S   +   L  A  G   + +   + 
Sbjct: 179 DYSEDSRAEVDLNVVMNSQGQLLEVQGTAEGAPFSRQQLNQLLDLADEGLQLLRHSQLQA 238

Query: 539 LSESRL 544
           L ++  
Sbjct: 239 LEQAPK 244



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 27/223 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +V    G T V+ +V  +  +   + G     L+ +Y+    +    P    R   
Sbjct: 28  FALSSVTVHTGRTAVICSVCLEEDVPKWRQGSGKGWLSADYRLLPAS---TPSRQPRELM 84

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALML 140
           + +     I R+I RS+R         E    +  +V+Q D        S+  A AAL L
Sbjct: 85  KLSGRTQEIQRLIARSLRACLDLEALGERSLHIDCDVLQADAG--TRSASITGAWAALAL 142

Query: 141 -----------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                      +G P    V    V  +  Q +L+    ED   +  L++ ++ +Q  +L
Sbjct: 143 GLRRLEARGVLNGTPMLEQVAAVSVGLVGSQALLDLDYSEDSRAEVDLNVVMN-SQGQLL 201

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            V+  A     S   +   +       + +  +  +  +   K
Sbjct: 202 EVQGTAEGAPFSRQQLNQLLDLADEGLQLLRHSQLQALEQAPK 244


>gi|156936190|ref|YP_001440106.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534444|gb|ABU79270.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
          Length = 211

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPS 395
           L   GDT+ +   ++    +E     L G  +      Y  LP AT   +      G   
Sbjct: 2   LVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQG 57

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD----- 450
            R +   RL  R++   +   A   +T+ +  ++ ++DG +  A++ G+ +AL D     
Sbjct: 58  GRTLEIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGGTRTASITGACVALADALNAL 117

Query: 451 ------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503
                    P+   VA +++G+V        + D+   ED     D  V  T+ G +  +
Sbjct: 118 VAAGKLKTNPMKGMVAAVSVGIVNGE----AVCDLEYVEDSAAETDMNVVMTEDGRMIEV 173

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           Q   +    +   ++  L  A+ G   I+      
Sbjct: 174 QGTAEGEPFTHEELLDLLALARGGIESIVASQKAA 208



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 17/181 (9%)

Query: 32  LATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88
           L  +G+T VL T   +  +     GQ    +T  Y     A           + +     
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT-HTRNAREAAKGKQGGRT 60

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVV---------SMVAASAA 137
           + I R+I RS+R         E  +    +V+Q D  +    +         ++ A  AA
Sbjct: 61  LEIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGGTRTASITGACVALADALNALVAA 120

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDAVLMVELEANQLS 196
             L   P +G V    V  +NG+ V +    ++     D+ V  T+D  + +E++     
Sbjct: 121 GKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRM-IEVQGTAEG 179

Query: 197 E 197
           E
Sbjct: 180 E 180


>gi|317968641|ref|ZP_07970031.1| ribonuclease PH [Synechococcus sp. CB0205]
          Length = 244

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 22/250 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M   + R DGR +  +R        +     S     G+T  I  V L    +E      
Sbjct: 1   MSSTQPRRDGRSATDLRSTRFAWDPMGFALSSVTVYTGNTAVICSVCL----EEGVPKWR 56

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            G+ +      Y  LP +T           S R     RL  R++   L   A    TL+
Sbjct: 57  KGSGKGWLSADYRLLPASTPSRQPRELMKLSGRTQEIQRLIARSLRACLDLEALGERTLQ 116

Query: 425 IVSEITESDGSSSMATVCGSSLALM-------DAGV----PISKPVAGIAMGLVKDGDDF 473
           I  ++ ++D  +  A++ G+  AL          GV    P+   VA +++GLV    D 
Sbjct: 117 IDCDVLQADAGTRTASITGAWAALAVGLQRLEQRGVLERSPLVGQVAAVSVGLV----DG 172

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L D+   ED    +D  V       +  +Q   +    S   +   +  A+ G   ++
Sbjct: 173 AALLDLDYSEDSRAEVDLNVVMNQEQHLLEIQGTAEGAPFSRQQLSSLVDLAESGIDQLM 232

Query: 533 NEMSKVLSES 542
               + L+E+
Sbjct: 233 QAQKQALAEA 242



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 27/222 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +V    G T V+ +V  +      + G     L+ +Y+    +    P    R   
Sbjct: 28  FALSSVTVYTGNTAVICSVCLEEGVPKWRKGSGKGWLSADYRLLPAS---TPSRQPRELM 84

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALML 140
           + +     I R+I RS+R         E   Q+  +V+Q D        S+  A AAL +
Sbjct: 85  KLSGRTQEIQRLIARSLRACLDLEALGERTLQIDCDVLQADAG--TRTASITGAWAALAV 142

Query: 141 S-------GL----PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                   G+    P  G V    V  ++G  +L+    ED   +  L++ ++  +  +L
Sbjct: 143 GLQRLEQRGVLERSPLVGQVAAVSVGLVDGAALLDLDYSEDSRAEVDLNVVMN-QEQHLL 201

Query: 187 MVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            ++  A     S   +   +    +    +++A  +     A
Sbjct: 202 EIQGTAEGAPFSRQQLSSLVDLAESGIDQLMQAQKQALAEAA 243


>gi|237739458|ref|ZP_04569939.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
 gi|229423066|gb|EEO38113.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
          Length = 171

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R I     +     GS L   G+T+ I   ++     E+    L GT + 
Sbjct: 3   REDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASV----SEKVPPFLRGTGKG 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSR----REIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT E ++  A       R +   RL  RA+   +         + I  +
Sbjct: 59  WVTAEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLV 467
           + ++DG +   ++ G  +AL                P+   VA I++G +
Sbjct: 119 VIQADGGTRTTSITGGYVALALAIKKLLKEEILEENPLIANVAAISVGKI 168



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 15/148 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           ++G+VL   G T V+ T      +     G     +T  Y     A  +       +  +
Sbjct: 25  AEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVTAEYSMLPRATNERNQREASK-GK 83

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            T   + I R+I R++R         E    +  +V+Q D  +    ++    + AL + 
Sbjct: 84  LTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQADGGTRTTSITGGYVALALAIK 143

Query: 142 GL---------PFEGPVVGAQVDYINGQ 160
            L         P    V    V  I+ +
Sbjct: 144 KLLKEEILEENPLIANVAAISVGKIDSE 171


>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
 gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
          Length = 263

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 10/242 (4%)

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +++ K +  ++ D   R DGR    +RD+S  +       GS+L   G TQ +V V  G 
Sbjct: 2   EVEKKRI-EILNDAGFRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVH-GP 59

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           RE +    +     R +  +       +TGE  +     +R +      +    PV+  +
Sbjct: 60  REAKMRSHTFH--DRANINVEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVVRTS 117

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
                 + I  +I + DG +    + G++LAL++AG+P+S  V  I+ G V      + L
Sbjct: 118 LYPRSQIDIYIQILQQDGGTLQTCINGTTLALINAGIPMSDFVCAIS-GGVHSTSPMLDL 176

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           + +  +E+ + H+   V      +  + M+ +   +        L  A+     +  EM 
Sbjct: 177 TTL--EENDVPHVTVAVMPKSKKVVLVTMETR---LHVERFEEVLCLARDAAAVLHKEMK 231

Query: 537 KV 538
           + 
Sbjct: 232 EA 233



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 9/197 (4%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG+ L ++G T VL +V   R  K     F    N       V     G  R+  +  +
Sbjct: 39  ADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANINVE-VTVASFSTGERRKRLKGDK 97

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
             +  +  I  +  P+        +Q+ I +     +       +   + AL+ +G+P  
Sbjct: 98  RILEFAATIKSTFEPVVRTSLYPRSQIDIYIQILQQDGGTLQTCINGTTLALINAGIPMS 157

Query: 147 GPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVLMVELEANQLSE--DVVL- 201
             V        +   +L+    E+     + V+       V++V +E     E  + VL 
Sbjct: 158 DFVCAISGGVHSTSPMLDLTTLEENDVPHVTVAVMPKSKKVVLVTMETRLHVERFEEVLC 217

Query: 202 ---DAIIFGHNECKPVI 215
              DA    H E K  +
Sbjct: 218 LARDAAAVLHKEMKEAV 234


>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
          Length = 241

 Score =  123 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 12/211 (5%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           +   +  + +R DGR +  +R + A VG+     GS+ F +GDT+ + +V  G ++    
Sbjct: 1   MPEYISVEGLREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVN-GPKQGVGK 59

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
                       +  +     +T +  +     R+    G          +         
Sbjct: 60  -----AGDAGKVVCDFEMAAFSTTQRRKPLRLDRKNAELGSKIASTFESAIMTDLYPRSQ 114

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I  ++ ++DG      +   +LALMDAGV ++  V      ++    D   + DI+  
Sbjct: 115 IEISVQVLQADGGVLAVAINAVTLALMDAGVAMTDFVCACTASVI----DGTNVLDINHY 170

Query: 483 EDHLGHMDFKVAGTDSG--ITAMQMDMKIGG 511
           E      +  +A   S   I   +M  ++ G
Sbjct: 171 EASAQGPELTIAVLPSSSTIVMAEMKSRVHG 201



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 13/173 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRS-LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           +DG+     G+T V+A V   +  +    D   +  +++   ++         R+  R  
Sbjct: 33  ADGSAYFQQGDTKVVAIVNGPKQGVGKAGDAGKVVCDFEMAAFST-----TQRRKPLRLD 87

Query: 86  ENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                +   I  +           +++ ++ + V+Q D       V++ A + ALM +G+
Sbjct: 88  RKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQADGGVLA--VAINAVTLALMDAGV 145

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEAN 193
                V       I+G  VL+    E       L + V  +   ++M E+++ 
Sbjct: 146 AMTDFVCACTASVIDGTNVLDINHYEASAQGPELTIAVLPSSSTIVMAEMKSR 198


>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
           nagariensis]
 gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
           nagariensis]
          Length = 245

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 8/242 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  + +R+DGR    +R I+ Q+ +L    GS++F  G+T+ +  V  G     +  D
Sbjct: 2   EYVSPEGLRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAV-FGPHAVTKRAD 60

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                     +  Y+    +TGE  R G   RR      + R  +   + +       + 
Sbjct: 61  --LREDAAIVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  ++ ++DG +  A +  + LAL  AGVP+   VA  A G +    D   L D++  ED
Sbjct: 119 VYVQVLQADGGTRCAAINAAVLALAAAGVPLRDLVASCAAGYL----DGTPLLDLNFTED 174

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
             G  D  VA        + + M    +  +     L  A+ G   I   M   L E   
Sbjct: 175 SGGGPDLAVALAPREGLLVLVQMD-NRLPVDTFQAVLDLARDGCRTISGVMRAALLEHTK 233

Query: 545 QL 546
           +L
Sbjct: 234 RL 235



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 11/194 (5%)

Query: 27  SDGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+ +   G T VLA V       +     +D   +   Y    ++ G+          
Sbjct: 32  ADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIVVCEYSMAAFSTGERRRRGK---- 87

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
                   +S +I  ++     +     +Q+ + V     +      ++ AA  AL  +G
Sbjct: 88  -GDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVLQADGGTRCAAINAAVLALAAAG 146

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DL-FVSGTQDAVLMVELEANQLSEDVV 200
           +P    V      Y++G  +L+    ED G   DL      ++ +L++    N+L  D  
Sbjct: 147 VPLRDLVASCAAGYLDGTPLLDLNFTEDSGGGPDLAVALAPREGLLVLVQMDNRLPVDTF 206

Query: 201 LDAIIFGHNECKPV 214
              +    + C+ +
Sbjct: 207 QAVLDLARDGCRTI 220


>gi|289607155|emb|CBI60875.1| unnamed protein product [Sordaria macrospora]
          Length = 148

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 8/145 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +            + +R I+ +    +   GS L   GDT+ +V  +L    +E+   
Sbjct: 8   REISGDSHAPIRPHPDEMRPITIETNFTRHAEGSCLIGFGDTKVLVTASL----EERLPP 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFP 420
            L G         Y  LP AT          G  S R     RL  R++  V+   A   
Sbjct: 64  WLRGKGEGWVTAEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLKALGE 123

Query: 421 YTLRIVSEITESDGSSSMATVCGSS 445
             + +  ++ ++DG +  A++ G+ 
Sbjct: 124 RQITLDCDVIQADGGTRTASISGAW 148



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP+ +ET    R ++G+ L  +G+T VL T   +  L     G+    +T  Y     A 
Sbjct: 26  RPITIETN-FTRHAEGSCLIGFGDTKVLVTASLEERLPPWLRGKGEGWVTAEYGMLPRAT 84

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL 122
               G     + + +     I R+I RS+R +       E Q+    +V+Q D 
Sbjct: 85  -HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQADG 137


>gi|89052697|ref|YP_508148.1| ribonuclease PH [Jannaschia sp. CCS1]
 gi|88862246|gb|ABD53123.1| RNAse PH [Jannaschia sp. CCS1]
          Length = 209

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 24/217 (11%)

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPS 395
           +   GDT  +   TL    + +    L  +        Y  LP AT    R     G  S
Sbjct: 1   MIRCGDTHVLCTATL----EARVPPFLKNSGLGWVTAEYGMLPRATHTRMRREAAAGKQS 56

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA---- 451
            R     RL  R++   + ++A     + +  ++ ++DG +  A++ G  +AL  A    
Sbjct: 57  GRTQEIQRLIGRSLRAGIDRSALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKL 116

Query: 452 -------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503
                    PI   +A ++ G+         + D+   ED     D     T +G +  +
Sbjct: 117 LKSGEIVTDPIVDHIAAVSCGIYAGQP----VLDLDYPEDSEAGTDGNFIMTGAGQVVEL 172

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           Q   +    S +        A++G   ++   +   +
Sbjct: 173 QASAEGATFSRDEFNELYSLAEKGVAELVQAQAAATA 209



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 31/216 (14%)

Query: 32  LATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE---SRPT 85
           +   G+T VL T   +  +           +T  Y     A        +RRE    + +
Sbjct: 1   MIRCGDTHVLCTATLEARVPPFLKNSGLGWVTAEYGMLPRAT----HTRMRREAAAGKQS 56

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS-- 141
                I R+I RS+R    +    E Q+    +V+Q D        S+     AL L+  
Sbjct: 57  GRTQEIQRLIGRSLRAGIDRSALGERQITVDCDVIQADGG--TRCASITGGWVALRLAVN 114

Query: 142 ------GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAVLMVE 189
                  +   P    +         GQ VL+   P   E     +  ++G    V+ ++
Sbjct: 115 KLLKSGEIVTDPIVDHIAAVSCGIYAGQPVLDLDYPEDSEAGTDGNFIMTG-AGQVVELQ 173

Query: 190 LEANQLS--EDVVLDAIIFGHNECKPVIEAISKLAK 223
             A   +   D   +           +++A +    
Sbjct: 174 ASAEGATFSRDEFNELYSLAEKGVAELVQAQAAATA 209


>gi|116072072|ref|ZP_01469340.1| Ribonuclease PH [Synechococcus sp. BL107]
 gi|116065695|gb|EAU71453.1| Ribonuclease PH [Synechococcus sp. BL107]
          Length = 243

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 84/240 (35%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R  S     +     S     G T  +  V L    D+       G    
Sbjct: 8   RADGRCRNDLRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCL----DDNVPRWRRGEGLG 63

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T +         S R     RL  R++   +        TL I  ++ 
Sbjct: 64  WLSAEYRLLPGSTPQRQGRELMKLSGRTQEIQRLIGRSLRAAVDMAKLGERTLLIDCDVI 123

Query: 431 ESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           E+D  +  A + G+ LA       L+  G+    P+   VA +++GLV    D   L D+
Sbjct: 124 EADAGTRTAAITGAWLALQRACSRLVSQGILESSPLQSQVAAVSVGLV----DGQALLDL 179

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  V   D G +  +Q   +    S   +   L  A+ G   ++    + 
Sbjct: 180 DYSEDSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDELLDLAEPGLKQLMQAQREA 239



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 21/216 (9%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +V    G T VL +V  D ++   + G+    L+  Y+      G  P    R   
Sbjct: 29  FALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSAEYRLLP---GSTPQRQGRELM 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL--ML 140
           + +     I R+I RS+R         E  ++I+    + ++     ++  A  AL    
Sbjct: 86  KLSGRTQEIQRLIGRSLRAAVDMAKLGERTLLIDCDVIEADAGTRTAAITGAWLALQRAC 145

Query: 141 SGL---------PFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLMVE 189
           S L         P +  V    V  ++GQ +L+    ED +  +DL  V      +L V+
Sbjct: 146 SRLVSQGILESSPLQSQVAAVSVGLVDGQALLDLDYSEDSRAEVDLNVVQADDGRLLEVQ 205

Query: 190 LEANQ--LSEDVVLDAIIFGHNECKPVIEAISKLAK 223
             A     S   + + +       K +++A  +   
Sbjct: 206 GTAEGAPFSRAQLDELLDLAEPGLKQLMQAQREALA 241


>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
          Length = 213

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 6/193 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++  + +R DGR S  +R I  ++G+  +  GS+   +G+T+  V    G  E  +   
Sbjct: 2   DLLSRQGLRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKV-VAAIYGPHEI-RTNR 59

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           + +          Y+    +  E  R    + +        ++A+   +         + 
Sbjct: 60  AKAPNDSAVINCQYSMATFSRSERKRRPRDN-KSAELTLHLKQAMATAIKTDLYPKSQID 118

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ +SDG +    V  ++LAL+DAG+ + + V      L         L DIS  E+
Sbjct: 119 IFVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGE---TPLVDISHLEE 175

Query: 485 HLGHMDFKVAGTD 497
            +G     VA   
Sbjct: 176 TMGGPSLTVAILP 188



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 5/138 (3%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q DG+     G T V+A +     ++  +   P         Y++        +R  R  
Sbjct: 31  QPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAVINCQYSMATFSRSERKRRPRDN 90

Query: 86  ENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
           ++  L   +  +++          K++  + + V+Q D  +    V + AA+ AL+ +G+
Sbjct: 91  KSAELTLHL-KQAMATAIKTDLYPKSQIDIFVQVLQSDGGNYS--VCVNAATLALIDAGI 147

Query: 144 PFEGPVVGAQVDYINGQY 161
             E  V+       NG+ 
Sbjct: 148 AMEEFVISCTSSLANGET 165


>gi|239636248|ref|ZP_04677250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
          L37603]
 gi|239597603|gb|EEQ80098.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
          L37603]
          Length = 89

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 3  DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
          +    + EWAGR L +ETG++A+Q++GAVL  YG+TVVL+T    +  +DG DFFPLTVN
Sbjct: 4  EKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDG-DFFPLTVN 62

Query: 63 YQERTYAVGKIPGGYLR 79
          Y+E+ YA GKIPGG+ +
Sbjct: 63 YEEKMYAAGKIPGGFKK 79


>gi|189184292|ref|YP_001938077.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
 gi|189181063|dbj|BAG40843.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
          Length = 251

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 96/245 (39%), Gaps = 27/245 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+  R    +R IS ++G +  + GS L   G+T  I   T+    +E     L   ++
Sbjct: 1   MRLCSRKDSEMRPISIELGTMLNSKGSCLIKIGNTHVICSATV----EESLPLFLKNKKQ 56

Query: 372 N-DFMMHYNFLPCATGEVSRMGAP---SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                  Y+ LP ++ +  +       S R     RL  RA+   +         + I  
Sbjct: 57  GGWVTAEYSMLPGSSLQRVKREGIQGKSGRTQEIQRLISRAMRAAVDLKLLGERQILIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A++ G  +A+             A  PI   VA I+ G+     +  ++
Sbjct: 117 DVINADGGTRAASITGGYVAMCLAVNKLMQEKNLAVYPILYQVAAISCGI----SNGRVI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D       +G    I  +Q+  +     +  ++  L+ A++   HI 
Sbjct: 173 VDLDYQEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIF 232

Query: 533 NEMSK 537
           +  ++
Sbjct: 233 DIQNQ 237



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 87/234 (37%), Gaps = 35/234 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS----LKDGQDFFPLTVNYQERTYA 69
           RP+ +E G +   S G+ L   G T V+ +   + S    LK+ +    +T  Y      
Sbjct: 12  RPISIELGTML-NSKGSCLIKIGNTHVICSATVEESLPLFLKNKKQGGWVTAEYSM---- 66

Query: 70  VGKIPGGYL---RRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL 122
              +PG  L   +RE     +     I R+I R++R         E Q++   +V+  D 
Sbjct: 67  ---LPGSSLQRVKREGIQGKSGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVINADG 123

Query: 123 ESSPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED--- 170
            +    ++    +  L ++ L         P    V        NG+ +++    ED   
Sbjct: 124 GTRAASITGGYVAMCLAVNKLMQEKNLAVYPILYQVAAISCGISNGRVIVDLDYQEDSCA 183

Query: 171 QGSLDLFV--SGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
           +   +     +GT   ++ +++ A      ++ V+  +         + +  ++
Sbjct: 184 EVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237


>gi|307700245|ref|ZP_07637285.1| KH domain protein [Mobiluncus mulieris FB024-16]
 gi|307614456|gb|EFN93685.1| KH domain protein [Mobiluncus mulieris FB024-16]
          Length = 249

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/180 (39%), Positives = 104/180 (57%), Gaps = 7/180 (3%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I  +++V AL QA+  RL IL+ M   +     +L    PR+  + IP D+I  VIG  G
Sbjct: 1   IPSDVLVGALGQARDARLKILDVMHAAIDTP-DELAPTAPRIITVNIPVDKIGEVIGPKG 59

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVK 629
           K+I  I E TGA++ I+DDGTV I + +    EAAR+ + +I    +PEV + + G VVK
Sbjct: 60  KMINQIQEDTGAELTIEDDGTVYIGADNGPAAEAARDAVNAIANPQMPEVGERFVGTVVK 119

Query: 630 VMDFGAFVHFCGARDGLVHISQLST----ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
              FGAF+     +DGL+HISQ+      +RV    DV++ G  V V++ + D RGK+ L
Sbjct: 120 TTTFGAFISLTPGKDGLLHISQIRRLVGGKRVENVEDVLQVGQQVQVEIGEIDQRGKLSL 179


>gi|156550959|ref|XP_001603897.1| PREDICTED: similar to ENSANGP00000009222 [Nasonia vitripennis]
          Length = 270

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 94/252 (37%), Gaps = 18/252 (7%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
               +R DGR    +R I  ++G+  +  GS+   +G T+ +  V  G  +     ++ +
Sbjct: 8   SQGGLRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATV-YGPHQPRGKANANA 66

Query: 368 GT-QRNDFMMHYNFLPCATG--EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
               +      Y+    + G  E  +     R+     +  R A+  ++         + 
Sbjct: 67  LKAVKGIVNCQYSTAVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQID 126

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDD---FIILS 477
           I  E+ + DGS     V  ++LAL+DAG+PI     G ++     L+ D DD      + 
Sbjct: 127 IFVEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSGQGTGIL 186

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMD---MKIGG----ISENIMVMALQQAKRGRLH 530
           D +  E+    +   V      +   +     +   G    +  + +     +A +G   
Sbjct: 187 DANWIEECSPGVTLSVVALPKVVDETETKSSVILCHGAGQRLHLSRLEPLRLRALQGCRD 246

Query: 531 ILNEMSKVLSES 542
           I   + + + + 
Sbjct: 247 IRAILDQAVKDH 258



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT-------VNYQER 66
           R ++L  G    Q+DG+     G+T +LATV      +   +   L          Y   
Sbjct: 23  RRIRLRMGVFG-QADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVKGIVNCQYSTA 81

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLES 124
            ++ G    G  +++ R        S+ +  ++  +       +++  + + V+Q D   
Sbjct: 82  VFSFG---AGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDIFVEVLQVDGSD 138

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYING 159
               V++ AA+ AL+ +G+P +   +G  V   + 
Sbjct: 139 F--CVAVNAATLALIDAGIPIKDYAIGCSVTVSDN 171


>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
 gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
          Length = 233

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 30/245 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGRD   +RD   ++G++ +  GS+    G+T AI  V L             G ++
Sbjct: 1   MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKP-----------GREQ 49

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
           ++  + Y  LP A  E   +G   RREI    +  +A+ P +        T+    EI +
Sbjct: 50  SNLKVSYRMLPFAGEERKGLGLT-RREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV------------KDGDDFIILSDI 479
           +D  + +A +   SLAL  AG+P+   V  IA+G V            +D D  II  ++
Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKEL 168

Query: 480 SGDEDHLGH---MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
               ++ G    +D  +A   + IT +Q+D   G I    ++ A++  K G   +++   
Sbjct: 169 PQYYEYYGEGKAVDIPMAMYKNKITLLQLD---GSIDRKSLLEAIKLGKDGIKRMIDLQK 225

Query: 537 KVLSE 541
             + +
Sbjct: 226 IAIED 230



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 36/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R  +++ G I++ +DG+     G T+ +A V     LK G++   L V+Y+   +A    
Sbjct: 12  RDTEMKIGVISK-ADGSAYCRTGNTIAIAAVY----LKPGREQSNLKVSYRMLPFA---- 62

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
             G  R+    T  EI +S +I +++ P  +F +      +  + +++ D      V ++
Sbjct: 63  --GEERKGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKADAG--TRVAAI 118

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-------------------- 171
            A S AL  +G+P +  V    V  +  + VL+    E+                     
Sbjct: 119 NALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKELPQYYEYYGEG 178

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
            ++D+ ++  ++ + +++L+ + +    +L+AI  G +  K +I+   
Sbjct: 179 KAVDIPMAMYKNKITLLQLDGS-IDRKSLLEAIKLGKDGIKRMIDLQK 225


>gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977]
 gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977]
          Length = 240

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 22/243 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R +      L    GS+L   G T+ +V V+L           + G +  
Sbjct: 3   RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSLTPG----VPRHMQGKRSG 58

Query: 373 DFMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
             M  YN LP +T   ++        R     R   RA    +        T+ + +++ 
Sbjct: 59  WLMAEYNLLPRSTESRTQRERFKLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVI 118

Query: 431 ESDGSSSMATVCGSSLALMDAG-----------VPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG + +A + G   AL+ A             P+++  A I++G     +   +L D+
Sbjct: 119 QADGGTRVAAILGGYAALVQAFDALVRAGRLDDWPLTEF-AAISLGWAGGDE---VLVDL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED   H D  V GT  G +  +    +   +   I    + +  R    ++ E+ K 
Sbjct: 175 DAREDDRVHADLTVVGTAEGELIEIHGGGEGRPVPRAIYDRMVDEGLRQIPGLVAEVHKQ 234

Query: 539 LSE 541
           L+E
Sbjct: 235 LAE 237



 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 34/237 (14%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVV----YDRSLKDGQDFFPLTVNYQERT 67
             RPLK+ T R    ++G+ L   G T VL  V       R ++  +  + L   Y    
Sbjct: 11  GRRPLKI-TPRYLDYAEGSALVELGRTRVLVAVSLTPGVPRHMQGKRSGW-LMAEYNLLP 68

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESS 125
            +         R   +       + R + R+ R         N+T V+  +V+Q D    
Sbjct: 69  RS---TESRTQRERFKLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVIQADGG-- 123

Query: 126 PHVVSMVAASAALMLSGLPFEGPV-------------VGAQVDYINGQYVLN--PRLDED 170
             V +++   AAL+ +   F+  V                 + +  G  VL      ++D
Sbjct: 124 TRVAAILGGYAALVQA---FDALVRAGRLDDWPLTEFAAISLGWAGGDEVLVDLDAREDD 180

Query: 171 QGSLDLFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
           +   DL V GT +  L+      +   +   +    +  G  +   ++  + K    
Sbjct: 181 RVHADLTVVGTAEGELIEIHGGGEGRPVPRAIYDRMVDEGLRQIPGLVAEVHKQLAE 237


>gi|149924421|ref|ZP_01912786.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
 gi|149814728|gb|EDM74302.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
          Length = 248

 Score =  121 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 29/253 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR ++ +R ++   G      GS L   G T+ +   ++ +R        LS    
Sbjct: 1   MRFDGRSNDQLRPLTLTPGFTSAADGSVLIATGGTRVLCTASVESR----TPSWLS--SG 54

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA----QFPYTLRIVS 427
                 Y  LP AT       A + R     RL  R++   +  +         ++    
Sbjct: 55  GWVTAEYAMLPGATRPRGGRKA-NGRAKEIQRLIGRSLRAAVDLSKLVGPDGGVSIVCDC 113

Query: 428 EITESDGSSSMATVCGSSLA-------LMDAGV----PISKPVAGIAMGLVK-DGDDFII 475
           ++ E+DG +  A + G+ +A       L+  G     P   PVA +++G++  +G +  +
Sbjct: 114 DVIEADGGTRTAAITGAWVALELALRRLVAGGKLSEHPGIAPVAAVSVGVIPVEGSEPEV 173

Query: 476 LSDISGDEDHLGHMDFKVAGT--DSGIT----AMQMDMKIGGISENIMVMALQQAKRGRL 529
           + D+   ED    +D  V       G T     +Q   + G  S   +   L  A+ G  
Sbjct: 174 MLDLPYSEDSRAIVDLNVVMRRAPEGGTPRLVEIQGTGEQGDFSREQLNRMLDLAEGGIT 233

Query: 530 HILNEMSKVLSES 542
           ++L      L E+
Sbjct: 234 NLLAGQQAALREA 246



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 21/196 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           RPL L  G  +  +DG+VL   G T VL T  V  R+         +T  Y     A   
Sbjct: 12  RPLTLTPGFTSA-ADGSVLIATGGTRVLCTASVESRTPSWLSSGGWVTAEYAMLPGAT-- 68

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
            P G  +   R  E + LI R +  ++             ++ +    + +      ++ 
Sbjct: 69  RPRGGRKANGRAKEIQRLIGRSLRAAVDLSKLVGPDGGVSIVCDCDVIEADGGTRTAAIT 128

Query: 133 AASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGT 181
            A  AL            LS  P   PV    V  I  +        E +  LDL  S  
Sbjct: 129 GAWVALELALRRLVAGGKLSEHPGIAPVAAVSVGVIPVE------GSEPEVMLDLPYSED 182

Query: 182 QDAVLMVELEANQLSE 197
             A++ + +   +  E
Sbjct: 183 SRAIVDLNVVMRRAPE 198


>gi|302341929|ref|YP_003806458.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
 gi|301638542|gb|ADK83864.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
          Length = 232

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 14/236 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R +    G+     GS++   G T+ +   ++    ++     L G  + 
Sbjct: 3   RIDGRNPGQMRPVVISGGVNPYAEGSAICAFGQTKVLCTASV----EQGAPRFLEGAGQG 58

Query: 373 DFMMHYNFLPCATGEV-SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                Y  LP AT     R  A + R     RL  RA+       A   YT+RI  ++  
Sbjct: 59  WITAEYAMLPRATHTRTGRDHAQAGRAKEISRLVGRALRAAADLAALDGYTIRIDCDVLV 118

Query: 432 SDGSSSMATVCGSSLALMDAGVPIS----KPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           +DG +  A V G  +AL  A   +     + V  ++ G V    D  +L D+   ED   
Sbjct: 119 ADGGTRTAAVSGGWVALALALRGLGLQPPRQVMALSAGRV----DGRLLVDLCYAEDSSA 174

Query: 488 HMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            +D  +     G +  +Q   + G  S   ++  +  +++    I+      ++  
Sbjct: 175 ELDLNMVLAADGQLIEIQGTGERGVFSPEELMELIAISRQAAGDIVAAQLAAVNGP 230



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 82/215 (38%), Gaps = 14/215 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAV 70
           RP+ +  G +   ++G+ +  +G+T VL T   ++      +G     +T  Y     A 
Sbjct: 13  RPVVIS-GGVNPYAEGSAICAFGQTKVLCTASVEQGAPRFLEGAGQGWITAEYAMLPRAT 71

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
               G    +  R  E   L+ R +  +        Y    ++  +V+  D  +    VS
Sbjct: 72  HTRTGRDHAQAGRAKEISRLVGRALRAAADLAALDGYT--IRIDCDVLVADGGTRTAAVS 129

Query: 131 MVAASAALMLSGLPFEGP--VVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
               + AL L GL  + P  V+      ++G+ +++    ED      L++ ++     +
Sbjct: 130 GGWVALALALRGLGLQPPRQVMALSAGRVDGRLLVDLCYAEDSSAELDLNMVLAA-DGQL 188

Query: 186 LMVELEA--NQLSEDVVLDAIIFGHNECKPVIEAI 218
           + ++        S + +++ I         ++ A 
Sbjct: 189 IEIQGTGERGVFSPEELMELIAISRQAAGDIVAAQ 223


>gi|116075628|ref|ZP_01472887.1| ribonuclease PH [Synechococcus sp. RS9916]
 gi|116066943|gb|EAU72698.1| ribonuclease PH [Synechococcus sp. RS9916]
          Length = 255

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 22/243 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            + R DGR +  +R  +     +     S +   G T  +  V       E       G 
Sbjct: 14  GEERNDGRSAADLRPFAINWDPMGFAISSLIVRTGRTAVLCSV----CHQEGVPRWRKGQ 69

Query: 370 QRNDFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
            +      Y  LP +T E         S R     RL  R++   +   A    TL I  
Sbjct: 70  GKGWLSAEYRLLPGSTPERQNRELLKLSGRTQEIQRLIGRSLRACIDMEALGENTLLIDC 129

Query: 428 EITESDGSSSMATVCGSSLALMDAGV-----------PISKPVAGIAMGLVKDGDDFIIL 476
           ++ ++D  +  A++ G+ +AL  A             PI+K VA +++GLV        L
Sbjct: 130 DVIQADAGTRTASITGAWVALKHACDQLLAQGLVTRQPITKQVAAVSVGLVNS----APL 185

Query: 477 SDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            D+   ED    +D  V   +   +  +Q   +    S + +   L  A+ G   +++  
Sbjct: 186 LDLDYSEDSRADVDLNVVMDEHQHLLEIQGTAEGAAFSRSELNGLLDLAEPGLQQLMDSQ 245

Query: 536 SKV 538
            + 
Sbjct: 246 RQA 248



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 77/216 (35%), Gaps = 25/216 (11%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +++   G T VL +V +   +   + GQ    L+  Y+      G  P    R   
Sbjct: 38  FAISSLIVRTGRTAVLCSVCHQEGVPRWRKGQGKGWLSAEYRLLP---GSTPERQNRELL 94

Query: 83  RPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL-- 138
           + +     I R+I RS+R         +N   +  +V+Q D        S+  A  AL  
Sbjct: 95  KLSGRTQEIQRLIGRSLRACIDMEALGENTLLIDCDVIQADAG--TRTASITGAWVALKH 152

Query: 139 ---------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLM 187
                    +++  P    V    V  +N   +L+    ED +  +DL  V      +L 
Sbjct: 153 ACDQLLAQGLVTRQPITKQVAAVSVGLVNSAPLLDLDYSEDSRADVDLNVVMDEHQHLLE 212

Query: 188 VELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKL 221
           ++  A     S   +   +       + ++++  + 
Sbjct: 213 IQGTAEGAAFSRSELNGLLDLAEPGLQQLMDSQRQA 248


>gi|78185641|ref|YP_378075.1| ribonuclease PH [Synechococcus sp. CC9902]
 gi|78169935|gb|ABB27032.1| RNAse PH [Synechococcus sp. CC9902]
          Length = 243

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 83/240 (34%), Gaps = 22/240 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R  S     +     S     G T  +  V L    D+       G    
Sbjct: 8   RADGRCRNALRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCL----DDNVPRWRRGEGLG 63

Query: 373 DFMMHYNFLPCATGEVSRMG--APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                Y  LP +T +         S R     RL  R++   +        TL I  ++ 
Sbjct: 64  WLSAEYRLLPGSTPQRQGRELMKLSGRTQEIQRLIGRSLRAAVDMAQLGERTLLIDCDVI 123

Query: 431 ESDGSSSMATVCGSSLALM-------DAGV----PISKPVAGIAMGLVKDGDDFIILSDI 479
           ++D  +  A + G+ LAL          G+    P+   VA +++GLV    D   L D+
Sbjct: 124 QADAGTRTAAITGAWLALHRACSRLVSQGILENSPLQSQVAAVSVGLV----DSQALLDL 179

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              ED    +D  V   D G +  +Q   +    S   +   L  A+ G   ++    + 
Sbjct: 180 DYSEDSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDALLDLAEPGLRQLMEAQRQA 239



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 25/216 (11%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +V    G T VL +V  D ++   + G+    L+  Y+      G  P    R   
Sbjct: 29  FALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSAEYRLLP---GSTPQRQGRELM 85

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE--TQVIINVMQHDLESSPHVVSMVAASAALM- 139
           + +     I R+I RS+R         E    +  +V+Q D        ++  A  AL  
Sbjct: 86  KLSGRTQEIQRLIGRSLRAAVDMAQLGERTLLIDCDVIQADAG--TRTAAITGAWLALHR 143

Query: 140 ----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDL-FVSGTQDAVLM 187
                     L   P +  V    V  ++ Q +L+    ED +  +DL  V      +L 
Sbjct: 144 ACSRLVSQGILENSPLQSQVAAVSVGLVDSQALLDLDYSEDSRAEVDLNVVQADDGRLLE 203

Query: 188 VELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           V+  A     S   +   +       + ++EA  + 
Sbjct: 204 VQGTAEGAPFSRAQLDALLDLAEPGLRQLMEAQRQA 239


>gi|149912896|ref|ZP_01901430.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
 gi|149813302|gb|EDM73128.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
          Length = 210

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 24/218 (11%)

Query: 340 LFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPS 395
           +   GDT  +   +L    +E+    + GT        Y  LP +T    R     G   
Sbjct: 1   MIRVGDTHVLCTASL----EERVPPFMKGTGLGWVTAEYGMLPRSTSSRMRREATAGKQG 56

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA-------L 448
            R +   RL  R++   + + A     + +  ++ ++DG +  A + G  +A       L
Sbjct: 57  GRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGGTRCAAITGGWIALRLAVNKL 116

Query: 449 MDAG----VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAM 503
           M AG     P+  PVA ++ G+         + D+   ED    +D     T S  +  +
Sbjct: 117 MKAGDVISDPLVDPVAAVSCGIYAGQP----VLDLDYPEDSEAGVDGNFIMTGSKRLIEV 172

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           QM  +    S + M + +  A++G   ++      ++ 
Sbjct: 173 QMSAEGSTYSRDQMNLLMDLAEKGVAELVAAQKAAVNA 210



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 31/215 (14%)

Query: 32  LATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQERTYAVGKIPGGYLRRE---SRPT 85
           +   G+T VL T   +  +        L   T  Y     +        +RRE    +  
Sbjct: 1   MIRVGDTHVLCTASLEERVPPFMKGTGLGWVTAEYGMLPRSTS----SRMRREATAGKQG 56

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL----- 138
              + I R+I RS+R    +    E Q+    +V+Q D        ++     AL     
Sbjct: 57  GRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGG--TRCAAITGGWIALRLAVN 114

Query: 139 -------MLSGLPFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAV-LM 187
                  ++S  P   PV         GQ VL+   P   E     +  ++G++  + + 
Sbjct: 115 KLMKAGDVISD-PLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIMTGSKRLIEVQ 173

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           +  E +  S D +   +         ++ A     
Sbjct: 174 MSAEGSTYSRDQMNLLMDLAEKGVAELVAAQKAAV 208


>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1336

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 75/178 (42%), Gaps = 7/178 (3%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R + A++G+ ++  GS+   +G+T+ + ++  G  + +    + SG         + 
Sbjct: 38  DELRSVKAKLGVFEQADGSAYVEQGNTKVLAIIN-GPHDSDARGPNASGHLT--VSCEFI 94

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           +   +T +        R+    G    R +  V+        T+ +  ++ ++DG     
Sbjct: 95  YASFSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLAT 154

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
            +  +SLA+MDAGVP+   +     G++    + + + D +  E      D  VA   
Sbjct: 155 AINAASLAMMDAGVPMKDFLCACNAGVL----EGVAVLDTNHSEALARGPDLTVAVMP 208



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 11/171 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVG 71
           R +K + G    Q+DG+     G T VLA +        +       LTV+ +    +  
Sbjct: 41  RSVKAKLGVF-EQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYAS-- 97

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSPHVV 129
                  R  SR           I R++  +       ++   + + V+Q D        
Sbjct: 98  -FSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLA--T 154

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL-DLFVS 179
           ++ AAS A+M +G+P +  +       + G  VL+    E      DL V+
Sbjct: 155 AINAASLAMMDAGVPMKDFLCACNAGVLEGVAVLDTNHSEALARGPDLTVA 205


>gi|148284140|ref|YP_001248230.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
 gi|146739579|emb|CAM79326.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 251

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 96/245 (39%), Gaps = 27/245 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R+  R    +R IS ++G +  + GS L   G+T  I   T+    +E     L   ++
Sbjct: 1   MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATV----EESLPLFLKNKKQ 56

Query: 372 N-DFMMHYNFLPCATGEVSRMGAP---SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                  Y+ LP ++ +  +       S R     RL  RA+   +         + I  
Sbjct: 57  GGWVTAEYSMLPGSSLQRVKREGIQGKSGRTQEIQRLISRAMRAAVDLKLLGERQILIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM-----------DAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++  +DG +  A++ G  +A+             A  PI   VA I+ G+     +  ++
Sbjct: 117 DVINADGGTRAASITGGYVAMCLAVNKLMQEKNLAVYPILYQVAAISCGI----SNGRVI 172

Query: 477 SDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            D+   ED    +D       +G    I  +Q+  +     +  ++  L+ A++   HI 
Sbjct: 173 VDLDYQEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIF 232

Query: 533 NEMSK 537
           +  ++
Sbjct: 233 DIQNQ 237



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 87/234 (37%), Gaps = 35/234 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYA 69
           RP+ +E G +   S G+ L   G T V+ +   + SL    K+ +    +T  Y      
Sbjct: 12  RPISIELGAML-NSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWVTAEYSM---- 66

Query: 70  VGKIPGGYL---RRES--RPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDL 122
              +PG  L   +RE     +     I R+I R++R         E Q++   +V+  D 
Sbjct: 67  ---LPGSSLQRVKREGIQGKSGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVINADG 123

Query: 123 ESSPHVVSMVAASAALMLSGL---------PFEGPVVGAQVDYINGQYVLNPRLDED--- 170
            +    ++    +  L ++ L         P    V        NG+ +++    ED   
Sbjct: 124 GTRAASITGGYVAMCLAVNKLMQEKNLAVYPILYQVAAISCGISNGRVIVDLDYQEDSCA 183

Query: 171 QGSLDLFV--SGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISK 220
           +   +     +GT   ++ +++ A      ++ V+  +         + +  ++
Sbjct: 184 EVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237


>gi|72012895|ref|XP_785829.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
           purpuratus]
 gi|115926426|ref|XP_001179028.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
           purpuratus]
          Length = 192

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 9/186 (4%)

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +      Y+    +T E        R+        +R     +         + I  +I
Sbjct: 14  DKVIINCQYSMATFSTNERKNRPQGDRKSTEMSLHLQRTFEATIQTHLYPRSQIDIFVQI 73

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A V  ++LA+++AG+P+   V   + G V +      L+D+S  E+  G  
Sbjct: 74  LQADGGNYCACVNAATLAIINAGIPMKDYVCACSSGYVNNTP----LTDVSYLEESQGGP 129

Query: 490 DFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
              VA       I   +MD +   +  + +   L+ A +G   +   M+  + E   ++ 
Sbjct: 130 VVTVAMLPKSEQIALFKMDNR---LHVDHLEQVLEVASKGCKDMYAVMNAAVKEHVSRMA 186

Query: 548 EFTPRV 553
           +     
Sbjct: 187 KSMECS 192



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 61/180 (33%), Gaps = 11/180 (6%)

Query: 49  SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--C 106
             K   D   +   Y   T++  +      +   +       +S  + R+          
Sbjct: 8   KGKPLHDKVIINCQYSMATFSTNE-----RKNRPQGDRKSTEMSLHLQRTFEATIQTHLY 62

Query: 107 YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR 166
            +++  + + ++Q D  +      + AA+ A++ +G+P +  V      Y+N   + +  
Sbjct: 63  PRSQIDIFVQILQADGGNY--CACVNAATLAIINAGIPMKDYVCACSSGYVNNTPLTDVS 120

Query: 167 LDEDQGSLDLFVSG--TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
             E+     +       +   + +    N+L  D +   +      CK +   ++   K 
Sbjct: 121 YLEESQGGPVVTVAMLPKSEQIALFKMDNRLHVDHLEQVLEVASKGCKDMYAVMNAAVKE 180


>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
 gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica]
          Length = 287

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 93/243 (38%), Gaps = 10/243 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQ-RTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R DGR    +R+   ++        GSS    G T+ +  V  G RE +   
Sbjct: 51  EIYSPEGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVD-GPREPDNRQ 109

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           ++   T R    ++ N    +T    +     +R      L R+ +   +         +
Sbjct: 110 NT---TDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLNPRTQI 166

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +   +   DG    A +  + LA++DAGVP++  V+  + G+  +      L D++  E
Sbjct: 167 AVNITVIAQDGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNN----ALIDLNTLE 222

Query: 484 DHLGH-MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +     +   V G    I+ + ++ ++   S   ++            I++   +   + 
Sbjct: 223 EQDVPFLTIGVIGKSDKISMLTLETQLPMASLEPVLATSLSGAHAIQDIMDAAVRKHGKH 282

Query: 543 RLQ 545
           RL+
Sbjct: 283 RLE 285



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 15/208 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQ---DFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           +DG+    +G T V+ TV   R   + Q   D   ++VN    +++  +      R + R
Sbjct: 82  ADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVISVNVNVASFST-ETRIKRQRNDKR 140

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             E  ILI ++++ ++    +   + +  V I V+  D    P    + AA  A++ +G+
Sbjct: 141 LAEMNILIRQLLEEAVLTKLN--PRTQIAVNITVIAQDGGLLP--ACINAACLAMIDAGV 196

Query: 144 PFEGPVVGAQVD-YINGQYV-LNPRLDEDQGSLDLFVSGTQDAV--LMVELEANQLSEDV 199
           P    V       Y N   + LN   ++D   L + V G  D +  L +E +    S + 
Sbjct: 197 PLTDYVSACSSGVYSNNALIDLNTLEEQDVPFLTIGVIGKSDKISMLTLETQLPMASLEP 256

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAK 227
           VL   + G +  + +++A     +   K
Sbjct: 257 VLATSLSGAHAIQDIMDA---AVRKHGK 281


>gi|294668514|ref|ZP_06733611.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309477|gb|EFE50720.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 157

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R ++ +R +      L    GS L   G+T+ I   ++    DE     L G  +     
Sbjct: 9   RAADALRAVKITPHFLPHADGSVLIECGNTKVICTASI----DESVPPFLRGKGQGWVTA 64

Query: 377 HYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
            Y  LP +T    R     G    R     RL  R++   +         + I  ++ ++
Sbjct: 65  EYGMLPASTATRMRREAAAGKQGGRTQEIQRLIGRSLRAAVDMAKLGERQILIDCDVIQA 124

Query: 433 DGSSSMATVCGSSLALM 449
           DG +  A++ G+ +AL 
Sbjct: 125 DGGTRTASISGAYVALA 141



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 14/123 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE-- 81
           +DG+VL   G T V+ T   D S+     G+    +T  Y     +        +RRE  
Sbjct: 27  ADGSVLIECGNTKVICTASIDESVPPFLRGKGQGWVTAEYGMLPASTA----TRMRREAA 82

Query: 82  -SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             +       I R+I RS+R         E Q++   +V+Q D        S+  A  AL
Sbjct: 83  AGKQGGRTQEIQRLIGRSLRAAVDMAKLGERQILIDCDVIQADGG--TRTASISGAYVAL 140

Query: 139 MLS 141
            L+
Sbjct: 141 ALA 143


>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 13/246 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R+DGR  +  R +   +G+L    GS+ F  G+T+ +  V  G RE           
Sbjct: 7   EGLRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVH-GPRECVNR--GERDD 63

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +R      ++    +TGE    G   RR +    + R+A+   +         + ++ ++
Sbjct: 64  ERAIIKCEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQV 123

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG    A +  + LA+ +AG+P+   +A  + G +    D   L D++  E+  G +
Sbjct: 124 LQADGGVRAAAINAAVLAIANAGIPMKDTMAACSAGYL----DGTPLLDLNYVEEGGGGV 179

Query: 490 DFKV---AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
              V   A     +  +Q D K    S  +       A  G   +   M + + E    L
Sbjct: 180 RVHVATHASRGDKVVVVQTDNKA---SVEVFEPVHALAVEGCAVVQKVMREAMIEHTSIL 236

Query: 547 GEFTPR 552
                R
Sbjct: 237 ATLRGR 242



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 18/205 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G T V+  V   R   +      +   +   + +  ++ G+      R   
Sbjct: 32  ADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAIIKCEFSQAAFSTGE-----RRARG 86

Query: 83  RPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           +     + ++ +I +++    L     ++E  V+I V+Q D        ++ AA  A+  
Sbjct: 87  KGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVLQADGGV--RAAAINAAVLAIAN 144

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQ----DAVLMVELEANQLS 196
           +G+P +  +      Y++G  +L+    E+ G        T     D V++V+ + N+ S
Sbjct: 145 AGIPMKDTMAACSAGYLDGTPLLDLNYVEEGGGGVRVHVATHASRGDKVVVVQTD-NKAS 203

Query: 197 EDVVLDAIIFGHNECKPVIEAISKL 221
            +V           C  V + + + 
Sbjct: 204 VEVFEPVHALAVEGCAVVQKVMREA 228


>gi|94986185|ref|YP_605549.1| ribonuclease PH [Deinococcus geothermalis DSM 11300]
 gi|94556466|gb|ABF46380.1| RNAse PH [Deinococcus geothermalis DSM 11300]
          Length = 237

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 22/212 (10%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GRD+ T R +S + G+     GS     G T+ +  V++    +++    + G +     
Sbjct: 8   GRDALTPRPLSVRRGVNPHAPGSVHLQLGRTEILATVSV----EDKPAPHMRGKKEGWLT 63

Query: 376 MHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
             Y  LP AT +         + R     RL  RA+   +        TL +  ++  +D
Sbjct: 64  AEYAMLPRATTDRQARERNLQNGRRHEIQRLLGRALRAGIDLRHFRGQTLYVDCDVLVAD 123

Query: 434 GSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           G + +A+V     AL D           +  P+   V  +++GLV D     +  D+   
Sbjct: 124 GGTRVASVLAGYAALHDFADRLIHSGKLSEWPLVHAVGAVSVGLVGDE----LRVDLDYA 179

Query: 483 EDHLGHMDFKVAGTDSG-ITAMQMDMKIGGIS 513
           ED     D  V  TDSG +   Q   + G I+
Sbjct: 180 EDKAARADLNVVATDSGLLIEAQGGAEEGPIT 211



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 27/229 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RPL +  G +   + G+V    G T +LATV  +              LT  Y     A 
Sbjct: 15  RPLSVRRG-VNPHAPGSVHLQLGRTEILATVSVEDKPAPHMRGKKEGWLTAEYAMLPRA- 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNET-QVIINVMQHDLESSPHV 128
                   R  +        I R++ R++R     + ++ +T  V  +V+  D      V
Sbjct: 73  --TTDRQARERNLQNGRRHEIQRLLGRALRAGIDLRHFRGQTLYVDCDVLVADGG--TRV 128

Query: 129 VSMVAASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDL 176
            S++A  AAL            LS  P    V    V  +  +  ++    ED+    DL
Sbjct: 129 ASVLAGYAALHDFADRLIHSGKLSEWPLVHAVGAVSVGLVGDELRVDLDYAEDKAARADL 188

Query: 177 FVSGTQDAVLM-VELEANQ--LSEDVVLDAIIFGHNECKPVI-EAISKL 221
            V  T   +L+  +  A +  ++    +  +  G      ++ E   +L
Sbjct: 189 NVVATDSGLLIEAQGGAEEGPITPAEYVRLLTVGVEAVGALLREVQRQL 237


>gi|241190345|ref|YP_002967739.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195751|ref|YP_002969306.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|240248737|gb|ACS45677.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250305|gb|ACS47244.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793332|gb|ADG32867.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis V9]
          Length = 230

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 26/221 (11%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +           GS L   G+T+ +   T               +        Y+ LP A
Sbjct: 1   MRITRAFTDVPEGSVLIECGNTRVMCTATFTDT----VPRWRKDSGLGWVTAEYSMLPRA 56

Query: 385 TGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           T +     S  G    R     RL  R +  V+   A    T+++  ++ ++DG +  A+
Sbjct: 57  TAQRTDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGGTRTAS 116

Query: 441 VCGSSLALMD------AGVPIS-------KPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           + G+ +AL+D          I          V+ +++G++    D   + D+   ED   
Sbjct: 117 ITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVI----DGEPMLDLPYVEDSRA 172

Query: 488 HMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRG 527
             D  VA T SG    +Q   +    S N + + L  A +G
Sbjct: 173 MTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLATKG 213



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 23/186 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+ T  +  ++   +       +T  Y     A  +       R  +  
Sbjct: 13  GSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQRTDRESVR-GKVG 71

Query: 86  ENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAAL--MLS 141
                ISR+I R +R +        N  Q+  +V+Q D        S+  A  AL   L+
Sbjct: 72  GRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGG--TRTASITGAHVALVDALN 129

Query: 142 GLPFEG-----------PVVGAQVDYINGQYVLN-PRLDEDQGSLDLFVSGT-QDAVLMV 188
                G            V    V  I+G+ +L+ P +++ +   D+ V+ T     + +
Sbjct: 130 WAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVEDSRAMTDMNVAMTGSGKFVEI 189

Query: 189 ELEANQ 194
           +  A  
Sbjct: 190 QGTAEH 195


>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
           carolinensis]
          Length = 188

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 71/168 (42%), Gaps = 6/168 (3%)

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            +      ++    +TGE  R     R+        ++     +         + I  +I
Sbjct: 11  DQAVVNCQFSLATFSTGERKRRPHGDRQTSEMSLHLKQTFEAAILTQLYPRSQIDIYVQI 70

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG +  A+V  ++LA++DAG+P+   V   + G ++D      L+D++  E+  G  
Sbjct: 71  LQADGGNYCASVNAATLAVIDAGIPLRDYVCASSAGFIEDTP----LADLNYVEEASGGP 126

Query: 490 DFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
              +A       I  ++M+ ++       ++ A  +A +    +L+++
Sbjct: 127 QLALALLPKSEQIALLEMNARLHEDHLERIMEAASKACKDVYLVLDQV 174



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 54  QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNET 111
            D   +   +   T++ G+      +R          +S  + ++           +++ 
Sbjct: 10  HDQAVVNCQFSLATFSTGE-----RKRRPHGDRQTSEMSLHLKQTFEAAILTQLYPRSQI 64

Query: 112 QVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
            + + ++Q D  +     S+ AA+ A++ +G+P    V  +   +I    + +    E+ 
Sbjct: 65  DIYVQILQADGGNY--CASVNAATLAVIDAGIPLRDYVCASSAGFIEDTPLADLNYVEEA 122

Query: 172 G---SLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
                L L +    + + ++E+ A  L ED +   +      CK V   + ++ +   +E
Sbjct: 123 SGGPQLALALLPKSEQIALLEMNAR-LHEDHLERIMEAASKACKDVYLVLDQVVREHLQE 181


>gi|328949911|ref|YP_004367246.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
 gi|328450235|gb|AEB11136.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
          Length = 240

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 86/244 (35%), Gaps = 22/244 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +           GS+L   G T+ +  V++           +   +  
Sbjct: 3   RKDGRGPLEMRPLVITPNYNAFAEGSALVELGQTRVLATVSITDG----VPRHVHPRRSG 58

Query: 373 DFMMHYNFLPCATGEVSRMGA--PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
             M  Y+ LP AT   ++        R     R   RA    L   A    T+ + +++ 
Sbjct: 59  WLMCEYSLLPRATPTRTQRERFKLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVL 118

Query: 431 ESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGDDFIILSDI 479
           ++DG + +A++ G   AL  A             P+ +    +++G   +     +L D+
Sbjct: 119 QADGGTRVASILGGYAALFLALDRMVRDGTLDDWPLLEF-GAVSLGWFGED---RVLLDL 174

Query: 480 SGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           +  ED     D  V  T  G +  +    +   +   +    +         ++  + + 
Sbjct: 175 TAIEDENAWADLTVVATRDGELIEIHGGGEGRPVPRAVYERMVAAGLEVIPSLVAAVHRA 234

Query: 539 LSES 542
           +S+ 
Sbjct: 235 VSKP 238



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 30/231 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV----YDRSLKDGQDFFPLTVNYQERTYA 69
           RPL +     A  ++G+ L   G+T VLATV       R +   +  + L   Y     A
Sbjct: 13  RPLVITPNYNA-FAEGSALVELGQTRVLATVSITDGVPRHVHPRRSGW-LMCEYSLLPRA 70

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPH 127
               P    R   +       + R + R+ R     K    +T ++  +V+Q D      
Sbjct: 71  ---TPTRTQRERFKLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVLQADGG--TR 125

Query: 128 VVSMVAASAALMLS-----------GLPFEGPVVGAQVDYINGQYV-LNPRLDEDQGS-L 174
           V S++   AAL L+             P         + +     V L+    ED+ +  
Sbjct: 126 VASILGGYAALFLALDRMVRDGTLDDWPLLE-FGAVSLGWFGEDRVLLDLTAIEDENAWA 184

Query: 175 DLFVSGTQDAVLMVELEANQ---LSEDVVLDAIIFGHNECKPVIEAISKLA 222
           DL V  T+D  L+      +   +   V    +  G      ++ A+ +  
Sbjct: 185 DLTVVATRDGELIEIHGGGEGRPVPRAVYERMVAAGLEVIPSLVAAVHRAV 235


>gi|154507583|ref|ZP_02043225.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797217|gb|EDN79637.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
           17982]
          Length = 235

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 26/243 (10%)

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
              G      GS L   G+T+ + V +      E        +        Y+ LP AT 
Sbjct: 1   MTRGWSGTGEGSVLIEFGNTRVLCVASFT----EGVPRWKRDSGEGWVTGEYSMLPRATE 56

Query: 387 EVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
           + S      G    R     RL  R++  ++  +A    T+ +  ++  +DG +  A + 
Sbjct: 57  QRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGGTRTAAIT 116

Query: 443 GSSLALMD-------AGV--P----ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           G+ +AL D        G+  P    ++  ++ I++G++    D   + D+   ED     
Sbjct: 117 GAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVI----DGTPMLDLPYVEDVRAET 172

Query: 490 DFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           D  V  T SG    +Q   +    + + +   L  A  G   +       L    ++  E
Sbjct: 173 DMNVVQTGSGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALEAPLMERVE 232

Query: 549 FTP 551
             P
Sbjct: 233 VRP 235



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 31/216 (14%)

Query: 29  GAVLATYGETVVLATV-----VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           G+VL  +G T VL        V       G+ +  +T  Y     A  +       +  +
Sbjct: 11  GSVLIEFGNTRVLCVASFTEGVPRWKRDSGEGW--VTGEYSMLPRATEQRSSRESVK-GK 67

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALML- 140
                  ISR+I RS+R +       E  ++   +V++ D        ++  A  AL   
Sbjct: 68  VGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGG--TRTAAITGAYVALADA 125

Query: 141 ------------SGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAV 185
                       S       +    V  I+G  +L+    ED   +  +++  +G+   +
Sbjct: 126 VSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYVEDVRAETDMNVVQTGSGRFI 185

Query: 186 LMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
             V+  A       D + + +         + EA  
Sbjct: 186 -EVQGTAEHAPFNRDELNELLDLATLGNARLAEAQK 220


>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
           laibachii Nc14]
          Length = 261

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 16/236 (6%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE-DEQYVDSLSG- 368
            +R+DGR     R + A++G+  R  GS+   +G+T+ +VVV  G RE D   + +  G 
Sbjct: 17  GLRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVV-YGPREVDGTTLKNAKGA 75

Query: 369 ---TQRNDFMMHYNFLPCATGEVS-RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
               ++            AT +      A  R+ +      ++     +         + 
Sbjct: 76  ASLVKKAIVHCECTQASFATSDRKVSRNASDRKNVEMSSAIKQIFESCIFTNLYPQSQIS 135

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++ ++DG    A++  +SLALMDAG+ ++  V     G V+       L D++  E 
Sbjct: 136 IYPQVLQADGGELAASINATSLALMDAGIALNDFVVASTAGFVQQKS----LCDLNAFEQ 191

Query: 485 HLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                   VA       +  ++M+ K   ++  +    +  A  G   I + + +V
Sbjct: 192 AARGPQITVAINPRSRHVNYLKMEAK---LALEVFESVMGMAINGCDRIGDSLQQV 244



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRS-----LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           +DG+     G T VL  V   R      LK+ +    L    ++           +   +
Sbjct: 41  ADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAASLV---KKAIVHCECTQASFATSD 97

Query: 82  SRPTENE-----ILISRMIDRSIRPLFSKCYKNETQVII--NVMQHDLESSPHVVSMVAA 134
            + + N      + +S  I +            ++Q+ I   V+Q D        S+ A 
Sbjct: 98  RKVSRNASDRKNVEMSSAIKQIFESCIFTNLYPQSQISIYPQVLQADGGELA--ASINAT 155

Query: 135 SAALMLSGLPFEGPVVGAQVDYI 157
           S ALM +G+     VV +   ++
Sbjct: 156 SLALMDAGIALNDFVVASTAGFV 178


>gi|320104936|ref|YP_004180527.1| RNAse PH [Isosphaera pallida ATCC 43644]
 gi|319752218|gb|ADV63978.1| RNAse PH [Isosphaera pallida ATCC 43644]
          Length = 240

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 83/238 (34%), Gaps = 20/238 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR  + +R +  + G    + GS L   G T  +V   L     +Q    L G   
Sbjct: 2   MRHDGRTPQEIRPVRFERGFAAASAGSVLVRSGSTVILVTANL----VDQVPPFLEGRGT 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                 Y  LP +T           R     RL  R++  ++      P TL + +++ +
Sbjct: 58  GWLTAEYAMLPGSTPSRKPR-KVDGRCTEIQRLIGRSLRAMVDLERLGPRTLHLDADVIQ 116

Query: 432 SDGSSSMATVCGSSLALMDAGVP----------ISKPVAGIAMGLVKDGDDFIILSDISG 481
           +DG +  A +  + +A  DA             +   +A +++G+V       +      
Sbjct: 117 ADGGTRTAAITAACVATADALNKCLGAEEARAILKGRLAAVSVGVVDGVGLLDL----DY 172

Query: 482 DEDHLGHMDFKVAGT-DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            ED    +D  V      G+  +Q   +        +   L  A +G   ++      
Sbjct: 173 SEDVRAEVDLNVVRLGPRGLVEVQGTAEGAPFDRRRLEELLDLADQGIDRLMALQLDA 230



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           RP++ E G  A  S G+VL   G TV+L T      +     G+    LT  Y       
Sbjct: 13  RPVRFERG-FAAASAGSVLVRSGSTVILVTANLVDQVPPFLEGRGTGWLTAEYAM----- 66

Query: 71  GKIPGGYLRRESRPTE-NEILISRMIDRSIRPLFS---KCYKNETQVIINVMQHDLESSP 126
             +PG    R+ R  +     I R+I RS+R +        +    +  +V+Q D     
Sbjct: 67  --LPGSTPSRKPRKVDGRCTEIQRLIGRSLRAMVDLERLGPRT-LHLDADVIQADGG--T 121

Query: 127 HVVSMVAASAALM 139
              ++ AA  A  
Sbjct: 122 RTAAITAACVATA 134


>gi|126730097|ref|ZP_01745909.1| ribonuclease PH [Sagittula stellata E-37]
 gi|126709477|gb|EBA08531.1| ribonuclease PH [Sagittula stellata E-37]
          Length = 206

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 24/212 (11%)

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRRE 398
            GDT  +   +L    +E+    + G+ +      Y  LP +T    R     G    R 
Sbjct: 1   MGDTHVLCTASL----EERVPPFVKGSGQGWVTAEYGMLPRSTSSRMRREAAMGKQGGRT 56

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA-------LMDA 451
           +   RL  RA+   + + A     + +  ++ ++DG +  A++ G  +A       LM A
Sbjct: 57  VEIQRLIGRALRAGVDRNALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLMKA 116

Query: 452 GVPISKP----VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK-VAGTDSGITAMQMD 506
           G  ++ P    VA ++ G+         + D+   ED    +D   +   D+ +  +QM 
Sbjct: 117 GDIVTDPLISEVAAVSCGIY----AGQAVLDLDYPEDSEAGVDGNFILRGDNALIEVQMS 172

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            +    S N M   +  A++G + ++      
Sbjct: 173 AEGSVFSRNQMTQLMDLAEKGVVELVAAQRAA 204



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 31/213 (14%)

Query: 35  YGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRE---SRPTENE 88
            G+T VL T   +  +     G     +T  Y     +        +RRE    +     
Sbjct: 1   MGDTHVLCTASLEERVPPFVKGSGQGWVTAEYGMLPRSTS----SRMRREAAMGKQGGRT 56

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAALMLS----- 141
           + I R+I R++R    +    E Q+    +V+Q D        S+     AL L+     
Sbjct: 57  VEIQRLIGRALRAGVDRNALGERQITVDCDVIQADGG--TRCASITGGWVALRLAVNKLM 114

Query: 142 ---GL---PFEGPVVGAQVDYINGQYVLN---PRLDEDQGSLDLFVSGTQDAVLMVELEA 192
               +   P    V         GQ VL+   P   E     +  + G  +A++ V++ A
Sbjct: 115 KAGDIVTDPLISEVAAVSCGIYAGQAVLDLDYPEDSEAGVDGNFILRG-DNALIEVQMSA 173

Query: 193 N--QLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
                S + +   +         ++ A     K
Sbjct: 174 EGSVFSRNQMTQLMDLAEKGVVELVAAQRAAVK 206


>gi|294337649|emb|CBI62623.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 170

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 102/170 (60%), Gaps = 7/170 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  +G + I   ++  ++     I++     ++  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQNGKIYIMHQNMEIVDLTIAYIKNFLKKIKLETVYEVK 120

Query: 627 VVKVM------DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++ +       FGA        +G +HIS+L+  +V K  DV+K G  +
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLANYKVDKVEDVLKIGQII 170


>gi|294337637|emb|CBI62617.1| polynucleotide phosphorylase [Candidatus Phytoplasma prunorum]
          Length = 170

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 99/169 (58%), Gaps = 7/169 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           I GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++IG
Sbjct: 1   IKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNKVSKYAPKVKMISINPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     IR+     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMKIVDLTIIYIRNFLKKIKVETVYEVKI 120

Query: 628 VKVMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ +       FG         +G +HIS+L   RV K  DV+K G  +
Sbjct: 121 IRFVKDKIGKTFGVIAEIFPGVEGFIHISKLENYRVDKVEDVLKIGQII 169


>gi|294337635|emb|CBI62616.1| polynucleotide phosphorylase [Candidatus Phytoplasma prunorum]
          Length = 170

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 98/167 (58%), Gaps = 7/167 (4%)

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++IG G
Sbjct: 3   GITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNKVSKYAPKVKMISINPEKIRDIIGSG 62

Query: 571 GKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           GK+I  I+E+    K++I  DG + I   ++  ++     IR+     +V  +Y+ ++++
Sbjct: 63  GKIINQIIEKHDNVKIDIMQDGKIYIMHQNMKIVDLTIIYIRNFLKKIKVETVYEVKIIR 122

Query: 630 VMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            +       FG         +G +HIS+L   RV K  DV+K G  +
Sbjct: 123 FVKDKIGKTFGVIAEIFPGVEGFIHISKLENYRVDKVEDVLKIGQII 169


>gi|254434220|ref|ZP_05047728.1| ribonuclease PH [Nitrosococcus oceani AFC27]
 gi|207090553|gb|EDZ67824.1| ribonuclease PH [Nitrosococcus oceani AFC27]
          Length = 210

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 24/217 (11%)

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSR 396
              G+T+ I   ++    +++    L GT R      Y  LP +T          G    
Sbjct: 1   MEFGNTRVICNASV----EDRIPRFLKGTGRGWITAEYGMLPRSTHNRMGREAAQGRQGG 56

Query: 397 REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD------ 450
           R +   R   RA+  V+   A    T+ +  ++ ++DG +  A + GS +AL+D      
Sbjct: 57  RTLEIQRFIGRALRAVVDLAALGEVTVTLDCDVIQADGGTRTAAITGSYVALVDAINNRL 116

Query: 451 -----AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQ 504
                   PI   +A I++G+     +   + D+   ED     D  V   ++G    +Q
Sbjct: 117 KKRIITHSPIHGQLASISVGIY----EGTPVLDLDYREDSTAETDMNVVMNEAGAFIEIQ 172

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
              +      N +   L  AK G   +L + ++VL++
Sbjct: 173 GTAEGHAFRMNELQAMLDLAKSGINTLLAQQTEVLAK 209


>gi|291533813|emb|CBL06926.1| ribonuclease PH [Megamonas hypermegale ART12/1]
          Length = 153

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+D R+++ +R         +   GS L   G+T+ I   T+     +     L G+   
Sbjct: 3   RIDRRNADQLRRFKITKYFQKYPAGSVLIETGNTKVICAATI----QDGVPSFLRGSGTG 58

Query: 373 DFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                Y+ LP AT   S      G  + R     RL  R +  V+   A    T+ I  +
Sbjct: 59  WLNAEYSLLPSATLTRSPREASRGRQNGRTQEIQRLIGRCLRSVMDFKALGERTVIIDCD 118

Query: 429 ITESDGSSSMATVCGSSLALMDA 451
           + ++DG +  A++ G+ +AL +A
Sbjct: 119 VIQADGGTRTASITGAFVALAEA 141



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 29  GAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           G+VL   G T V+        +     G     L   Y     A             R  
Sbjct: 27  GSVLIETGNTKVICAATIQDGVPSFLRGSGTGWLNAEYSLLPSAT-LTRSPREASRGRQN 85

Query: 86  ENEILISRMIDRSIRPLFS-KCYKNETQVI-INVMQHDLESSPHVVSMVAASAALM 139
                I R+I R +R +   K     T +I  +V+Q D        S+  A  AL 
Sbjct: 86  GRTQEIQRLIGRCLRSVMDFKALGERTVIIDCDVIQADGG--TRTASITGAFVALA 139


>gi|294337647|emb|CBI62622.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 171

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 101/170 (59%), Gaps = 7/170 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKVM------DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++ +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVI 170


>gi|213863109|ref|ZP_03386364.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 77

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 115 INVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-QGS 173
             V+  + + +P +V+M+ ASAAL LSG+PF GP+  A+V YIN QYVLNP  DE  +  
Sbjct: 1   ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK 60

Query: 174 LDLFVSGTQDAVLMVEL 190
           LDL V+GT+ AVLMVE 
Sbjct: 61  LDLVVAGTEAAVLMVES 77



 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 427 SEITESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           + +   +   +  +  + G+S AL  +G+P + P+    +G + D      + + + DE 
Sbjct: 1   ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPTQDEL 56

Query: 485 HLGHMDFKVAGTDSGITAMQM 505
               +D  VAGT++ +  ++ 
Sbjct: 57  KESKLDLVVAGTEAAVLMVES 77


>gi|294337651|emb|CBI62624.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
 gi|294337653|emb|CBI62625.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 170

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 101/170 (59%), Gaps = 7/170 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V++++I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMISINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKVM------DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++ +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVI 170


>gi|294337661|emb|CBI62629.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 98/167 (58%), Gaps = 7/167 (4%)

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG G
Sbjct: 3   GITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSG 62

Query: 571 GKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           GK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++++
Sbjct: 63  GKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVAYIQNFLKKIKVENVYEVKILR 122

Query: 630 VMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 123 FVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQII 169


>gi|294337655|emb|CBI62626.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
 gi|294337657|emb|CBI62627.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 99/169 (58%), Gaps = 7/169 (4%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
           I GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG
Sbjct: 1   IKGITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIG 60

Query: 569 MGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++
Sbjct: 61  SGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKI 120

Query: 628 VKVMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++ +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 121 LRFVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQII 169


>gi|294337659|emb|CBI62628.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 98/167 (58%), Gaps = 7/167 (4%)

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG G
Sbjct: 3   GITLEIFEKVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSG 62

Query: 571 GKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           GK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++++
Sbjct: 63  GKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILR 122

Query: 630 VMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 123 FVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQII 169


>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
 gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
          Length = 259

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 9/246 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++     R DGR    +RD++  +       GS+L   G TQ +V V  G RE +Q   
Sbjct: 6   EILNAHGYRSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSV-YGPREPKQR-- 62

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           S S   R    +     P ++GE  + G   +R        ++   PV+  +     T+ 
Sbjct: 63  SQSAHDRATINVEVGTAPFSSGERRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTID 122

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +   I + DGS   A +  ++LAL+ AGVP+   V  ++ G V D +  + L+ +  +E+
Sbjct: 123 VFITILQQDGSLIPACINATTLALICAGVPLLDFVCAVSAG-VHDTESMLDLTTL--EEN 179

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            L  ++  V      +  + ++ +   +         + A      +  EM   + +   
Sbjct: 180 DLPWVNAAVMPKTGKVVMVGLETR---LHVQRFEEMFRIALDAAKVLHQEMKAAIQDRTN 236

Query: 545 QLGEFT 550
           +L    
Sbjct: 237 KLTLAM 242



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 76/207 (36%), Gaps = 27/207 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+ L ++G T VL +V   R  K       D   + V      ++ G+          
Sbjct: 36  ADGSALVSHGLTQVLVSVYGPREPKQRSQSAHDRATINVEVGTAPFSSGERRKRGR---- 91

Query: 83  RPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
              +    +   + ++  P+       ++   V I ++Q D    P    + A + AL+ 
Sbjct: 92  -GDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITILQQDGSLIP--ACINATTLALIC 148

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDL------FVSGTQDAVLM-VELEAN 193
           +G+P    V        + + +L+    E+    DL       +  T   V++ +E   +
Sbjct: 149 AGVPLLDFVCAVSAGVHDTESMLDLTTLEEN---DLPWVNAAVMPKTGKVVMVGLETRLH 205

Query: 194 QLSEDVV----LDAIIFGHNECKPVIE 216
               + +    LDA    H E K  I+
Sbjct: 206 VQRFEEMFRIALDAAKVLHQEMKAAIQ 232


>gi|294337663|emb|CBI62630.1| polynucleotide phosphorylase [Candidatus Phytoplasma mali]
          Length = 170

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 99/167 (59%), Gaps = 7/167 (4%)

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+  I    L+QAK+ R++ILNEM KV+++SR ++ ++ P+V+++ I P++IR++IG G
Sbjct: 3   GITLEIFEKVLEQAKKDRINILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSG 62

Query: 571 GKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           GK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ ++++
Sbjct: 63  GKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILR 122

Query: 630 VMD------FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 123 FVKDKMDKTFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQII 169


>gi|294337639|emb|CBI62618.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 171

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 100/170 (58%), Gaps = 7/170 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           KI GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++I
Sbjct: 1   KIKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKVM------DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++ +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVI 170


>gi|237805484|ref|ZP_04592188.1| BCCT transporter [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026591|gb|EGI06646.1| BCCT transporter [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 215

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 66/98 (67%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           ++         EAAR+ +  IT   E+ KIY G+V +++DFGAFV+    +DGLVHIS L
Sbjct: 110 LQPPQGEGGTAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISML 169

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           S  RV K +D++KEG+ V V +LD D+RG+IKLS+K V
Sbjct: 170 SDARVEKVTDILKEGEEVEVLVLDVDNRGRIKLSIKDV 207


>gi|294337641|emb|CBI62619.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
 gi|294337643|emb|CBI62620.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
 gi|294337645|emb|CBI62621.1| polynucleotide phosphorylase [Candidatus Phytoplasma pyri]
          Length = 171

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 100/170 (58%), Gaps = 7/170 (4%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           K+ GI+  I    L+QAK+ R+ ILNEM KV+++SR ++ ++ P+V+++ I P++IR++I
Sbjct: 1   KVKGITLEIFEKVLKQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILINPEKIRDII 60

Query: 568 GMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G GGK+I  I+E+    K++I  DG + I   ++  ++     I++     +V  +Y+ +
Sbjct: 61  GSGGKIINQIIEKHDNVKIDIMQDGKIYIMHQNMEIVDLTITYIKNFLKKIKVETVYEVK 120

Query: 627 VVKVM------DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +++ +       FGA        +G +HIS+L   +V K  DV+K G  +
Sbjct: 121 ILRFVRDKMDKTFGAIAEIFPGVEGFIHISKLENYKVDKVEDVLKIGQVI 170


>gi|51473808|ref|YP_067565.1| ribonuclease PH [Rickettsia typhi str. Wilmington]
 gi|51460120|gb|AAU04083.1| Phosphate-dependent exonuclease [Rickettsia typhi str. Wilmington]
          Length = 168

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR S  +R IS ++  L    GS L   G+T  +   T  T         L G  R
Sbjct: 1   MRQSGRKSNQLRPISLELSPLIHAEGSCLIKIGNTHVMCSATCETT----VPPFLRGQNR 56

Query: 372 NDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
                 Y  +P +T    +     G    R     RL  R +  V+         + I  
Sbjct: 57  GWITAEYGMIPGSTSNRIKREVALGKQGGRTQEIQRLIGRVMRCVINLQKLGERQIIIDC 116

Query: 428 EITESDGSSSMATVCGSSLALM 449
           ++  +DG +  + + GS +AL 
Sbjct: 117 DVINADGGTRTSAITGSYIALH 138



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 14  RPLKLETGRIARQ--SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTY 68
           RP+ LE   ++    ++G+ L   G T V+ +   + ++     GQ+   +T  Y     
Sbjct: 12  RPISLE---LSPLIHAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNRGWITAEYGMIPG 68

Query: 69  AVGKIPGGYLRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESS 125
           +        ++RE    +       I R+I R +R + +     E Q+II+    + +  
Sbjct: 69  STS----NRIKREVALGKQGGRTQEIQRLIGRVMRCVINLQKLGERQIIIDCDVINADGG 124

Query: 126 PHVVSMVAASAALMLS 141
               ++  +  AL L+
Sbjct: 125 TRTSAITGSYIALHLA 140


>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 250

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 9/228 (3%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I AQ+       GSS   +G+T+ +V VT G  E  Q        ++ 
Sbjct: 14  RLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVT-GPHEGRQSGQRGGADKQA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +  NF   +  E  +     +R        R A   VL        T+ +   I   
Sbjct: 73  KVEVEINFAGFSGVERRKR-KSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIHIVSQ 131

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIA------MGLVKDGDDFIILSDI-SGDEDH 485
           DGS   A +  S+LAL+DAG+P++  +               +      L D+ + +E  
Sbjct: 132 DGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASADDPLLDLNNQEELE 191

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           L  +     G    +    M+ ++       M+    +  +   +IL+
Sbjct: 192 LPFLTVGTLGESDKVAVCLMESRVRMERLESMLAVGIEGCKRMRNILD 239



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 25/219 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G T +L +V      +             V  +           G  RR+ 
Sbjct: 36  ADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQAKVEVEINFAGFS----GVERRKR 91

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +  +    +   I  +   +        + + +N+     + S     + A++ AL+ +G
Sbjct: 92  KSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIHIVSQDGSLLAACINASTLALIDAG 151

Query: 143 LPFEGPVVGA------QVDYINGQYVLNPRLD---EDQGSLDLFVSGT-----QDAVLMV 188
           +P    +V             +     +P LD   +++  L     GT     + AV ++
Sbjct: 152 IPMTDYLVACTAASSASASAADNASADDPLLDLNNQEELELPFLTVGTLGESDKVAVCLM 211

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           E     +  + +   +  G   CK +   +  + K   K
Sbjct: 212 ESR---VRMERLESMLAVGIEGCKRMRNILDGVVKGYGK 247


>gi|87125085|ref|ZP_01080932.1| ribonuclease PH [Synechococcus sp. RS9917]
 gi|86167405|gb|EAQ68665.1| ribonuclease PH [Synechococcus sp. RS9917]
          Length = 220

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 23/225 (10%)

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG-- 392
              S L   G T  +  +      +        G+ +      Y  LP +T E  +    
Sbjct: 4   ALSSVLVRSGRTAVLCSI----GHEAGVPRWRMGSGKGWLSAEYRLLPGSTPERQKRELL 59

Query: 393 APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
             S R     RL  R++   L   A    TL +  ++ ++D  +  A + G+ +AL  A 
Sbjct: 60  KLSGRTQEIQRLIGRSLRACLDMEALGENTLLVDCDVIQADAGTRTAAITGAWVALQRAC 119

Query: 453 -----------VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-I 500
                       P+   VA +++GL+        L D++  ED    +D  V    SG +
Sbjct: 120 ERLVKRGDLSHNPVRDQVAAVSVGLIGGE----ALLDLNYSEDSQADVDLNVVMDGSGRL 175

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV-LSESRL 544
             +Q   +    S + +   L  A+ G   ++    +    ESR 
Sbjct: 176 LELQGTAEGAPFSRSELTRLLDLAEPGLTALMAAQQRALAPESRP 220



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 25/187 (13%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
            +  +VL   G T VL ++ ++  +   + G     L+  Y+      G  P    R   
Sbjct: 3   FALSSVLVRSGRTAVLCSIGHEAGVPRWRMGSGKGWLSAEYRLLP---GSTPERQKRELL 59

Query: 83  RPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALM- 139
           + +     I R+I RS+R          N   V  +V+Q D        ++  A  AL  
Sbjct: 60  KLSGRTQEIQRLIGRSLRACLDMEALGENTLLVDCDVIQADAG--TRTAAITGAWVALQR 117

Query: 140 ----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
                     LS  P    V    V  I G+ +L+    ED      L++ + G+   +L
Sbjct: 118 ACERLVKRGDLSHNPVRDQVAAVSVGLIGGEALLDLNYSEDSQADVDLNVVMDGS-GRLL 176

Query: 187 MVELEAN 193
            ++  A 
Sbjct: 177 ELQGTAE 183


>gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 181

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 24/190 (12%)

Query: 275 MVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQR 334
           M++  ++E    +EG+IV +F  +++++VR  ++  + R+DGR  +TVR +    G+L R
Sbjct: 1   MIAQITAEDEEISEGKIVDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPR 60

Query: 335 THGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP 394
           THGS++F RG+TQA+ V TLGT  D Q +D  +   +    M  N+              
Sbjct: 61  THGSAIFTRGETQALAVATLGTERDAQIIDEFNNNGK----MIKNWFEWEKD-------- 108

Query: 395 SRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
           +R+EI           P L  T +    L+ + EI   +G   +  V GS+  L  A   
Sbjct: 109 NRKEI-----------PKLHPTQKPIAVLKRLIEIFTDEGDVVIDPVAGSASTLRAA-RE 156

Query: 455 ISKPVAGIAM 464
           +++P  G  +
Sbjct: 157 LNRPSYGFEI 166


>gi|2275200|gb|AAB63822.1| putative polyribonucleotide phosphorylase [Arabidopsis thaliana]
          Length = 171

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 52/87 (59%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+
Sbjct: 18  NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVH 77

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEI 89
           YQER  AVG+  GG+ +RE R  ++E+
Sbjct: 78  YQERFSAVGRTSGGFFKREGRTKDHEV 104


>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149388461|gb|EAZ63552.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 241

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 12/233 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R+   ++     +  GSS   +G+T+ I VV  G  E    +
Sbjct: 2   ELYSPEGLRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQ-GPMEPA--L 58

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S + +      ++ +    +T E  +     +R +       R     +         +
Sbjct: 59  RSQANSNEATLEVNLSVANFSTTERKKRSKSEKRMVQLKTTLERTFQQSVMCNLYPRTLI 118

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG-D 482
           RI   +   DG    A     +LAL+DAGV +   VA +  GL     D   L D++G +
Sbjct: 119 RIDLHVLSQDGGMLAACTNAMTLALIDAGVSMYDYVAAMTAGL----HDQTPLLDMNGLE 174

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           E+ +  +   V G    ++ + ++ K   I  + +   L  A  G   I + M
Sbjct: 175 ENDMSTLTIGVIGKSEKLSLLMLEDK---IPLDRLESVLAIAIAGSHKIRDLM 224



 Score = 41.8 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 10/190 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           SDG+     G T V+  V                    E   +V        ++ S+  +
Sbjct: 33  SDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEAT-LEVNLSVANFSTTERKKRSKSEK 91

Query: 87  NEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
             + +   ++R+ +         +   ++ ++V+  D           A + AL+ +G+ 
Sbjct: 92  RMVQLKTTLERTFQQSVMCNLYPRTLIRIDLHVLSQDGGMLA--ACTNAMTLALIDAGVS 149

Query: 145 FEGPVVGAQVDYINGQYVL--NPRLDEDQGSLDLFVSGTQDAVLMVELEANQL---SEDV 199
               V        +   +L  N   + D  +L + V G  + + ++ LE        E V
Sbjct: 150 MYDYVAAMTAGLHDQTPLLDMNGLEENDMSTLTIGVIGKSEKLSLLMLEDKIPLDRLESV 209

Query: 200 VLDAIIFGHN 209
           +  AI   H 
Sbjct: 210 LAIAIAGSHK 219


>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 242

 Score =  111 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 21/206 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +      F      +  ++G     E  +  + +R I  +   T     T  ++ ++   
Sbjct: 55  ENAEKACFEVIWKPKTGQIGKV---EKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHD 111

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH---- 488
           DGS     +  +  AL+DAG+P+      I   L  +G  +++L     +E  +      
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLAVAICCCLADNG--YLVLDPNKLEEKKMTAFAYL 169

Query: 489 --MDFKVAGTDSGITAMQMDMKIGGI 512
              +  ++    G +  + +    GI
Sbjct: 170 VFPNTTLSVLPEGSSVAEGEPVEHGI 195



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 28  DGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
            G+   + G+T VLA V   +      +  +     V ++ +T  +GK+           
Sbjct: 28  HGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKTGQIGKV----------- 76

Query: 85  TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
            E E  +  ++ R+I+ +   +      T VII V+  D    P   ++ AA AAL+ +G
Sbjct: 77  -EKEYEM--IMKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC--AINAACAALVDAG 131

Query: 143 LPFEGPVVGAQVDYINGQY-VLNPRLDEDQG 172
           +P +   V       +  Y VL+P   E++ 
Sbjct: 132 IPMKHLAVAICCCLADNGYLVLDPNKLEEKK 162


>gi|207093020|ref|ZP_03240807.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 102

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 7   VEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER 66
           + I  + +  +    ++A+Q+  ++L   G+T++LA+V  +R     +DF PL V + E+
Sbjct: 4   ITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVEREPV-SEDFLPLVVQFLEK 62

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKC 106
           +YA GKIPGG+++RE R  + EIL SR+IDR++RPLF K 
Sbjct: 63  SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKD 102


>gi|15231368|ref|NP_190207.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314404|ref|NP_001030817.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314427|ref|NP_001030818.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314448|ref|NP_001030819.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|145332769|ref|NP_001078250.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
 gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
 gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
 gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
 gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
 gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
          Length = 239

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 21/206 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +      F      +  ++G     E  +  + +R I  +   T     T  ++ ++   
Sbjct: 55  ENAEKACFEVIWKPKSGQIGKV---EKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHD 111

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH---- 488
           DGS     +  +  AL+DAG+P+      I   L ++G  +++L     +E  +      
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENG--YLVLDPNKLEEKKMTAFAYL 169

Query: 489 --MDFKVAGTDSGITAMQMDMKIGGI 512
              +  ++    G +  + +    GI
Sbjct: 170 VFPNTTLSVLPEGSSVAEGEPVEHGI 195



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 28  DGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
            G+   + G+T VLA V   +      +  +     V ++ ++  +GK+           
Sbjct: 28  HGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSGQIGKV----------- 76

Query: 85  TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
            E E  +  ++ R+I+ +   +      T VII V+  D    P   ++ AA AAL+ +G
Sbjct: 77  -EKEYEM--ILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC--AINAACAALVDAG 131

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQG 172
           +P +   V        NG  VL+P   E++ 
Sbjct: 132 IPMKHLAVAICCCLAENGYLVLDPNKLEEKK 162


>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
 gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
          Length = 268

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 12/235 (5%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++     R DGR  + +R +  + G++ +  GS+     +T+ I     G RE  +  + 
Sbjct: 29  LIRKDGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVIC-AIYGPREAPRRQEF 87

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
              + +      + F P +     R       E  +  L  +A+ P +         + I
Sbjct: 88  ---SMKGRLTCEFKFAPFSCIYR-RKHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDI 143

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
              + E+DGS+  A +  +S+AL  AG+ +   V+   M       D  IL D    E H
Sbjct: 144 YITVLENDGSALSAGIICASVALAMAGIEMLDLVSACTMV----QSDNHILMDPCEKEIH 199

Query: 486 LGHMD--FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                    VA   S +  +   ++ G ++++    AL     G   IL  M + 
Sbjct: 200 SSSASGHTMVAILPS-LNVVSGLVQEGELTQDAATKALSSCIEGCARILPIMQQA 253



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 19/225 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP+ L  G ++ Q+ G+       T V+  +   R     Q+F     LT  ++   ++ 
Sbjct: 46  RPMFLRAGVVS-QAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTCEFKFAPFSC 104

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
                   RR+      E   S ++ +++ P     K  K +  + I V+++D  +    
Sbjct: 105 ------IYRRKHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLENDGSALS-- 156

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLD----LFVSGTQDA 184
             ++ AS AL ++G+     V    +   +   +++P   E   S      +        
Sbjct: 157 AGIICASVALAMAGIEMLDLVSACTMVQSDNHILMDPCEKEIHSSSASGHTMVAILPSLN 216

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE-AISKLAKMCAKE 228
           V+   ++  +L++D    A+      C  ++      L K    +
Sbjct: 217 VVSGLVQEGELTQDAATKALSSCIEGCARILPIMQQALVKNIKTQ 261


>gi|169829487|ref|YP_001699645.1| ribonuclease PH [Lysinibacillus sphaericus C3-41]
 gi|168993975|gb|ACA41515.1| Ribonuclease PH [Lysinibacillus sphaericus C3-41]
          Length = 196

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 19/192 (9%)

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            G  ++     Y+ LP AT + +      G  + R +   RL  RA+  V+   A    T
Sbjct: 1   MGKGKDWITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERT 60

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDA-----------GVPISKPVAGIAMGLVKDGD 471
           + I  ++ ++DG +  A++ G+ +A+  A             P++  +A  ++G+V++  
Sbjct: 61  VWIDCDVIQADGGTRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFLAATSVGIVEEQG 120

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               + D++  ED    +D  +  T +G    +Q   +    S   +   L   ++G   
Sbjct: 121 ---AVLDLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQ 177

Query: 531 ILNEMSKVLSES 542
           ++      L+E 
Sbjct: 178 LVELQKTALAEQ 189



 Score = 41.4 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 23/185 (12%)

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE--TQVIIN 116
           +T  Y     A  +       R  +     + I R+I R++R +       E    +  +
Sbjct: 8   ITAEYSMLPRATAQRTPRESSR-GKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCD 66

Query: 117 VMQHDLESSPHVVSMVAASAALMLS------GLPF-EGPV----VGAQVDYINGQ-YVLN 164
           V+Q D        S+  A  A+  +        PF + PV        V  +  Q  VL+
Sbjct: 67  VIQADGG--TRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFLAATSVGIVEEQGAVLD 124

Query: 165 PRLDED---QGSLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
               ED      +++ ++G     + ++    + +   + + + +  G    + ++E   
Sbjct: 125 LNYVEDVAAAVDMNIVMTG-AGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQK 183

Query: 220 KLAKM 224
                
Sbjct: 184 TALAE 188


>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
 gi|150843771|gb|EDN18964.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
          Length = 261

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 15/234 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT--- 369
           R+DGR    +R ++AQ+     + GSS    G+TQ +  VT G   D   + S+ G    
Sbjct: 14  RLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVT-GP-CDPSKLRSIGGGGSN 71

Query: 370 ---QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              ++ +  +  +F   A  +  + G   +R             P L  T     T+ I 
Sbjct: 72  NAGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILIS 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDIS-G 481
             I   DGS   A +  S+LAL+DAG+P+   +     G       + +    L D++ G
Sbjct: 132 LHILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNLG 191

Query: 482 DEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           +E  L  +    A  G   G+ A+ M+ ++       M+       +    IL+
Sbjct: 192 EEQELPFLTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVREILD 245



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 90/236 (38%), Gaps = 35/236 (14%)

Query: 20  TGRIARQ--SDGAVLATYGETVVLATVVYDRSLK-----------DGQDFFPLTVNYQER 66
           T +I+ Q  SDG+   + G T VL TV                  +  +   + V   E 
Sbjct: 27  TAQISTQPSSDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGSNNAGEKAEVRV---EI 83

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINV--MQHDLES 124
           ++A     G   ++  R  +    +S  +  +  P       + + ++I++  +  D   
Sbjct: 84  SFAG--FAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILISLHILSLDG-- 139

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVD----YINGQYVLNPRLDE---DQGSL-DL 176
           S     + A++ AL+ +G+P    +          Y +     +P LD    ++  L  L
Sbjct: 140 SLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNLGEEQELPFL 199

Query: 177 FVS----GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            V+    G  D V+ + +E  ++    +   +  G + CK V E +  + +   K+
Sbjct: 200 TVATAGEGDGDGVVALVME-TRVQAGRLEGMLAVGVDGCKQVREILDGVIRTRGKK 254


>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
          Length = 240

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 9/242 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++     +  GSS   +G+T+ +  V  G  E    +
Sbjct: 2   ELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQ-GPIEPA--L 58

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S   ++R +  ++ N    +T E  +     RR +       +     +         +
Sbjct: 59  RSQQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNI 118

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  ++   DG    A +   +LAL+DAG+ +   V+G++ GL     D   L D++  E
Sbjct: 119 VINVQVLCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLY----DQTPLLDVNNLE 174

Query: 484 DHLGH-MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +H    +   V G    +  M ++ K+       ++            ++++  +     
Sbjct: 175 EHDMSCLTVGVIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKHGII 234

Query: 543 RL 544
           R 
Sbjct: 235 RA 236



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 3/169 (1%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           SDG+     G T V+ TV                 N  E    +        ++ SR   
Sbjct: 33  SDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN-IEVNLNIASFSTFERKKRSRNER 91

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
             + +   ++++            T ++INV     +       + + + AL+ +G+   
Sbjct: 92  RLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAVINSITLALIDAGISMY 151

Query: 147 GPVVGAQVDYINGQYVL--NPRLDEDQGSLDLFVSGTQDAVLMVELEAN 193
             V G      +   +L  N   + D   L + V G  + + ++ LE  
Sbjct: 152 DYVSGVSCGLYDQTPLLDVNNLEEHDMSCLTVGVIGKSEKLALMLLEDK 200


>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
 gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
          Length = 250

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 9/228 (3%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I AQ+       GSS   +G+T+ +V VT G  E  Q        ++ 
Sbjct: 14  RLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVT-GPHEGRQSGQRGGADKQA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +  NF   +  E  +     +R        R A   VL         + +   I   
Sbjct: 73  KVEVEINFAGFSGVERRKR-KSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIHIVSQ 131

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIA------MGLVKDGDDFIILSDI-SGDEDH 485
           DGS   A +  S+LAL+DAG+P++  +               +      L D+ + +E  
Sbjct: 132 DGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASADDPLLDLNNQEELE 191

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           L  +     G    +    M+ ++       M+    +  +    IL+
Sbjct: 192 LPFLTVGTLGDSDKVAVCLMESRVRMERLESMLAVGIEGCKRMRSILD 239



 Score = 41.4 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G T +L +V      +             V  +           G  RR+ 
Sbjct: 36  ADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQAKVEVEINFAGFS----GVERRKR 91

Query: 83  RPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           +  +    +   I  +     L      +   + I+++  D   S     + A++ AL+ 
Sbjct: 92  KSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIHIVSQDG--SLLAACINASTLALID 149

Query: 141 SGLPFEGPVVGA 152
           +G+P    +V  
Sbjct: 150 AGIPMTDYLVAC 161


>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
           kowalevskii]
          Length = 198

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 17/197 (8%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R D  +   +R  S +  LL R  GS+ + +GDT  I V   G  E +Q  + L   
Sbjct: 2   TSQRADCGNL-ELRSQSCEQNLLSRPDGSATYCQGDTSVI-VAVYGPAEVKQSKEFL--- 56

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
             +   +   F P       ++G P   E    RL R     ++        ++ I+ ++
Sbjct: 57  --DKATLEVIFKP-------KVGIPGCSEKFQERLIRNTCETIVLTALHPRSSINIIIQV 107

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE-DHLGH 488
             + GS     V  + +AL+DAG+P+S  VA +   L  DGD  IIL   S  E +    
Sbjct: 108 MHNAGSLLSCCVNSTCMALLDAGLPMSCLVAAVTCSLSCDGD--IILDPTSQQEKEAKAI 165

Query: 489 MDFKVAGTDSGITAMQM 505
           + F     D+ I     
Sbjct: 166 LTFVFESRDNEIITSNT 182



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 28  DGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T V+  V      +  K+  D   L V ++ +                 P
Sbjct: 27  DGSATYCQGDTSVIVAVYGPAEVKQSKEFLDKATLEVIFKPKV--------------GIP 72

Query: 85  TENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
             +E    R+I  +   +       ++   +II VM      S     + +   AL+ +G
Sbjct: 73  GCSEKFQERLIRNTCETIVLTALHPRSSINIIIQVM--HNAGSLLSCCVNSTCMALLDAG 130

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDED---QGSLDLFVSGTQDAVLM 187
           LP    V         +G  +L+P   ++   +  L        + ++ 
Sbjct: 131 LPMSCLVAAVTCSLSCDGDIILDPTSQQEKEAKAILTFVFESRDNEIIT 179


>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
           exonuclease, putative; ribosomal RNA processing protein,
           putative [Candida dubliniensis CD36]
 gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
           dubliniensis CD36]
          Length = 240

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 92/242 (38%), Gaps = 9/242 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++     +  GSS   +G+T+ +  V  G  E    +
Sbjct: 2   ELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQ-GPIEP--TL 58

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S   ++R +  ++ N    +T E  +     RR +       +     +         +
Sbjct: 59  RSQQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNI 118

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  ++   DG      +   +LAL+DAG+ +   V+G++ GL     D   L D++  E
Sbjct: 119 VINVQVLCQDGGMLATIINSITLALIDAGISMYDYVSGVSCGLY----DQTPLLDVNNLE 174

Query: 484 DHLGH-MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +H    +   V G    +  + ++ K+       ++            ++++  +     
Sbjct: 175 EHDMSCLTIGVIGKSEKLALLLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKHGII 234

Query: 543 RL 544
           R 
Sbjct: 235 RA 236



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 3/169 (1%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           SDG+     G T V+ TV                 N  E    +        ++ SR   
Sbjct: 33  SDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERAN-IEVNLNIASFSTFERKKRSRNER 91

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
             + +   ++++            T ++INV     +       + + + AL+ +G+   
Sbjct: 92  RLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLATIINSITLALIDAGISMY 151

Query: 147 GPVVGAQVDYINGQYVL--NPRLDEDQGSLDLFVSGTQDAVLMVELEAN 193
             V G      +   +L  N   + D   L + V G  + + ++ LE  
Sbjct: 152 DYVSGVSCGLYDQTPLLDVNNLEEHDMSCLTIGVIGKSEKLALLLLEDK 200


>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
          Length = 240

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 9/242 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++     +  GSS   +G+T+ +  V  G  E    +
Sbjct: 2   ELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQ-GPIEPA--L 58

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S   ++R +  ++ N    +T E  +     RR +       +     +         +
Sbjct: 59  RSQQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNI 118

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  ++   DG    A +   +LAL+DAG+ +   V+G++ G+     D   L D++  E
Sbjct: 119 VINVQVLCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGVY----DQTPLLDVNNLE 174

Query: 484 DHLGH-MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +H    +   V G    +  M ++ K+       ++            ++++  +     
Sbjct: 175 EHDMSCLTVGVIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKHGII 234

Query: 543 RL 544
           R 
Sbjct: 235 RA 236



 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 3/169 (1%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           SDG+     G T V+ TV                 N  E    +        ++ SR   
Sbjct: 33  SDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN-IEVNLNIASFSTFERKKRSRNER 91

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
             + +   ++++            T ++INV     +       + + + AL+ +G+   
Sbjct: 92  RLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDGGMLAAVINSITLALIDAGISMY 151

Query: 147 GPVVGAQVDYINGQYVL--NPRLDEDQGSLDLFVSGTQDAVLMVELEAN 193
             V G      +   +L  N   + D   L + V G  + + ++ LE  
Sbjct: 152 DYVSGVSCGVYDQTPLLDVNNLEEHDMSCLTVGVIGKSEKLALMLLEDK 200


>gi|42570002|ref|NP_182244.2| 3' exoribonuclease family domain 1 protein-related [Arabidopsis
           thaliana]
 gi|330255721|gb|AEC10815.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 469

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 52/87 (59%)

Query: 3   DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           +  +V+I +  R + +ETG + RQ+  AV  T GET+V  +V       +  DF PL V+
Sbjct: 18  NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVH 77

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEI 89
           YQER  AVG+  GG+ +RE R  ++E+
Sbjct: 78  YQERFSAVGRTSGGFFKREGRTKDHEV 104


>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
 gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 21/206 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +S    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 5   RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +             +  ++G     E     + +R +  +   T     T  I+ ++   
Sbjct: 55  ENPEKACIEVIWKPKTGQIGKL---EKEFEMILKRTLQSICILTLNPNTTTSIIVQVVND 111

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH---- 488
           DG+  +  +  +  AL+DAG+P+      I   L + G  ++IL     +E  +      
Sbjct: 112 DGALLVCAINAACAALVDAGIPMKHLAVAICCCLAEGG--YVILDPTKLEEQKMRGFTYL 169

Query: 489 --MDFKVAGTDSGITAMQMDMKIGGI 512
              +  V+    G + ++ +    GI
Sbjct: 170 VFPNSVVSVLPEGSSHVEGEPMEHGI 195



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 23/210 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+   + G+T VLA V   +      +  +   + V ++ +T  +GK+          
Sbjct: 27  AHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVIWKPKTGQIGKL---------- 76

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             E E  +  ++ R+++ +        T   I V   + + +  V ++ AA AAL+ +G+
Sbjct: 77  --EKEFEM--ILKRTLQSICILTLNPNTTTSIIVQVVNDDGALLVCAINAACAALVDAGI 132

Query: 144 PFEGPVVGAQVDYINGQYVL-NPRLDEDQGSLDLFVSGTQDAVLMVELEA-----NQLSE 197
           P +   V        G YV+ +P   E+Q           ++V+ V  E       +  E
Sbjct: 133 PMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPME 192

Query: 198 DVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
             ++ ++  G    +  ++ + +      K
Sbjct: 193 HGIITSVTHGVMSVEEYLKCLERGRAASTK 222


>gi|289423347|ref|ZP_06425155.1| protein YhgF [Peptostreptococcus anaerobius 653-L]
 gi|289156278|gb|EFD04935.1| protein YhgF [Peptostreptococcus anaerobius 653-L]
          Length = 716

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 25/267 (9%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +     +  +S +L++    ISK +A   +    +  +F    D+      LG 
Sbjct: 472 VVEDSVNKIGVDLNSASYSLLEHVSGISKSIAKNIVAYRDENGEFENREDLKKV-KRLGP 530

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSESRLQLG 547
             FK A     IT  +  +   G+          +A    L +L   +  + S     + 
Sbjct: 531 AAFKQAAGFIRITNAKNPLDNTGVHPE-----SYKACMNILDLLGYSLDDISSNGLGDID 585

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAA 606
           +      ++ +  D      G+G   ++ I+E+      +I D G   +    +  +E  
Sbjct: 586 KRLKSYGLVKLCQDS-----GLGEATLKDIIEEIKKPGRDIRDSGVKPVLRKDVMSLE-- 638

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                      E +    G V  V+DFGAFV      DGLVHISQ+S +RV   SD++  
Sbjct: 639 ---------DLEEDMELTGTVRNVVDFGAFVDIGIKNDGLVHISQISNKRVKNPSDLLTV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GD V VK++  D +RGK+ LSMK V Q
Sbjct: 690 GDIVKVKVIGIDKERGKVSLSMKNVKQ 716


>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 244

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 9/242 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++     +  GSS   +G+T+ I  V +G    E   
Sbjct: 5   ELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTV-IGP--MEPTS 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +     R +  ++      +T E  +     +R +       R    ++         +
Sbjct: 62  RAQMNQDRANVEVNLTIANFSTFERKKRSKTEKRLVELRTTLERTFEQLILLHLYPRTNI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  ++   DG    A     +LALMDAG+ +   V+ I+ GL     D   L D++  E
Sbjct: 122 TINVQVLNQDGGMLAAVTNSITLALMDAGIAMYDYVSSISCGL----HDQSPLLDLNNLE 177

Query: 484 DHLGH-MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ++    +   V G    +  + ++ K+   +   ++            +++   +    +
Sbjct: 178 ENDMSCLTIGVIGKSEKLALLMLEDKMPLDNLEKVLGIAIAGSHRIKDLMDMEVRRHGSA 237

Query: 543 RL 544
           R 
Sbjct: 238 RA 239



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 6/187 (3%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           SDG+     G T V+ TV+                N +     +        ++ S+  +
Sbjct: 36  SDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRANVEVNLT-IANFSTFERKKRSKTEK 94

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
             + +   ++R+   L        T + INV   + +         + + ALM +G+   
Sbjct: 95  RLVELRTTLERTFEQLILLHLYPRTNITINVQVLNQDGGMLAAVTNSITLALMDAGIAMY 154

Query: 147 GPVVGAQVDYINGQYV--LNPRLDEDQGSLDLFVSGTQDAVLMVELEAN---QLSEDVVL 201
             V        +   +  LN   + D   L + V G  + + ++ LE        E V+ 
Sbjct: 155 DYVSSISCGLHDQSPLLDLNNLEENDMSCLTIGVIGKSEKLALLMLEDKMPLDNLEKVLG 214

Query: 202 DAIIFGH 208
            AI   H
Sbjct: 215 IAIAGSH 221


>gi|15806981|ref|NP_295706.1| 30S ribosomal protein S1 [Deinococcus radiodurans R1]
 gi|6459772|gb|AAF11535.1|AE002036_6 ribosomal protein S1, putative [Deinococcus radiodurans R1]
          Length = 629

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++    +  +   + +L ++   L      +  F P      +   ++ ++    GK + 
Sbjct: 203 VLERMQEADEAFEVEVLEKVRGGLVAQVEGIRAFLPAS---QVDTRRVNDLDPYVGKPLM 259

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             + +   K N      V I+  ++ E E A+    +     E   +++G+VV++ DFG 
Sbjct: 260 VKLIELNRKRN-----RVIISHRAIMEAEKAKAR-EATVGQLEPGAVFEGEVVEITDFGV 313

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           FV+  G  DGLVH S+L+  R     DVVK GD V V+++D D+ R +I LSMK + Q+ 
Sbjct: 314 FVNL-GGIDGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKALTQDP 372

Query: 695 GK 696
            +
Sbjct: 373 WE 374



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 9/190 (4%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           IS   ++ A +   R       E   V     +++ +F   V +  I     R+ +  G 
Sbjct: 274 ISHRAIMEAEKAKAREATVGQLEPGAVFEGEVVEITDFGVFVNLGGIDGLVHRSELTYGR 333

Query: 572 KVIRGIVEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
                 V + G KV +     D+G  +I  S  A  +   +     T+   + +  KG+V
Sbjct: 334 FNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKALTQ---DPWEGATERYHIGQRVKGKV 390

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
             + +FGAF+      +GLVH+S++S  +RV   ++V+KEGD V   +L  D R  +I L
Sbjct: 391 TNLTNFGAFIELEPGLEGLVHVSEMSWTKRVRHPNEVMKEGDEVEAVILRIDPRERRISL 450

Query: 686 SMKVVDQNTG 695
            ++    +  
Sbjct: 451 GIRQTTDDPW 460



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            KG++  + DFG F+      +GL+HIS+L T+RV   +D+ K+GD +   +L+ D    
Sbjct: 473 VKGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNIDPVEQ 532

Query: 682 KIKLSMK 688
           +  LS +
Sbjct: 533 RASLSRR 539


>gi|328710981|ref|XP_001948871.2| PREDICTED: ATP-dependent RNA helicase DHX8-like [Acyrthosiphon
           pisum]
          Length = 1251

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 12/133 (9%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
              +    + +++  K +  +DG  K             + I S +  PE+ K+Y G+V+
Sbjct: 253 KRDRNRDRLGDRSRDKRDRSNDGLRKERHE---------KEIESKSKFPELGKVYAGKVL 303

Query: 629 KVMDFGAFVHFCGARD--GLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
            ++DFG FV     R   GLVHISQL  + RV   SDVV  GD V VK+L      KI L
Sbjct: 304 NIVDFGCFVQLDMFRQSQGLVHISQLRQKGRVTSVSDVVSRGDKVMVKVLSISGNQKISL 363

Query: 686 SMKVVDQNTGKPI 698
           SMK VDQ+TG+ +
Sbjct: 364 SMKDVDQDTGEDL 376


>gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium acetobutylicum ATCC 824]
 gi|50401136|sp|Q97I09|ISPH_CLOAB RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase
 gi|15024823|gb|AAK79811.1|AE007693_9 penicillin tolerance LytB domain/S1 ribosomal protein fusion
           [Clostridium acetobutylicum ATCC 824]
          Length = 642

 Score =  106 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A +      + +  ++   +  S   +  F P   +     D ++  IG    V
Sbjct: 385 YKEIKEAFENKTTLNVVVKEDVKGGIIASYKGIRIFIPASHVELFHVDNLKEYIGKSFDV 444

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMD 632
              I+E +  K         KI +S  A +   +E +        E  ++ +G+V ++ D
Sbjct: 445 --AIIEYSTKKR------QTKIVASRRALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTD 496

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV   G  DGL+H+S++S  RV K +DV+K GD + V +L  D +  K+ LS+K + 
Sbjct: 497 FGAFVEIEG-VDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLT 555

Query: 692 QNTGKPI 698
           +N    +
Sbjct: 556 ENPWNNV 562



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   V  +  G+V++  DFGAFV      DGLVHIS++S +R+AK SD +  G+
Sbjct: 558 PWNNVEEKYPVGSVVLGKVIRFADFGAFVKLEPGVDGLVHISEISHKRIAKPSDALNVGE 617

Query: 669 TVWVKLLDF-DDRGKIKLSMKVVDQ 692
            +  K+L+   +  KI LS++ V++
Sbjct: 618 EIKAKILEVSSEEKKIGLSIREVEE 642



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 566 VIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           VIG+  G      I+E+  +K++ +      I++ +  E+  A + I        V    
Sbjct: 258 VIGVTAGASTPDWIIEEAISKMSENQ-----ISNETNNEMADAMKFIAENEGKIYVGASV 312

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682
            G++++V +   F++    RDG++  S++  +      ++   GD +  K++   D    
Sbjct: 313 TGEIIQVSEKEVFLNINYKRDGVIPKSEIDDD-GKDLKELFTVGDKIVAKIIKLKDADNY 371

Query: 683 IKLSMKVVDQNTG 695
           + LS+K + +  G
Sbjct: 372 VVLSVKELQREQG 384


>gi|325509261|gb|ADZ20897.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium acetobutylicum EA 2018]
          Length = 642

 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A +      + +  ++   +  S   +  F P   +     D ++  IG    V
Sbjct: 385 YKEIKEAFENKTTLNVVVKEDVKGGIIASYKGIRIFIPASHVELFHVDNLKEYIGKSFDV 444

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMD 632
              I+E +  K         KI +S  A +   +E +        E  ++ +G+V ++ D
Sbjct: 445 --AIIEYSTKKR------QTKIVASRRALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTD 496

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV   G  DGL+H+S++S  RV K +DV+K GD + V +L  D +  K+ LS+K + 
Sbjct: 497 FGAFVEIEG-VDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLT 555

Query: 692 QNTGKPI 698
           +N    +
Sbjct: 556 ENPWNNV 562



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   V  +  G+VV+  DFGAFV      DGLVHIS++S +R+AK SD +  G+
Sbjct: 558 PWNNVEEKYPVGSVVLGKVVRFADFGAFVELEPGVDGLVHISEISHKRIAKPSDALNVGE 617

Query: 669 TVWVKLLDF-DDRGKIKLSMKVVDQ 692
            +  K+L+   +  KI LS++ V++
Sbjct: 618 EIKAKILEVSSEEKKIGLSIREVEE 642



 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 566 VIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           VIG+  G      I+E+  +K++ +      I++ +  E+  A + I        V    
Sbjct: 258 VIGVTAGASTPDWIIEEAISKMSENQ-----ISNETNNEMADAMKFIAENEGKIYVGASV 312

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682
            G++++V +   F++    RDG++  S++  +      ++   GD +  K++   D    
Sbjct: 313 TGEIIQVSEKEVFLNINYKRDGVIPKSEIDDD-GKDLKELFTVGDKIVAKIIKLKDADNY 371

Query: 683 IKLSMKVVDQNTG 695
           + LS+K + +  G
Sbjct: 372 VVLSVKELQREQG 384


>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
 gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
          Length = 251

 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 88/236 (37%), Gaps = 8/236 (3%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I AQ+       GSS    G+T+ +V VT G  E +Q         + 
Sbjct: 14  RLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVT-GPAEGKQAGQRGGNGGQA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +  NF   +  E  R G   +R        R A   VL        T+ +   I   
Sbjct: 73  KVEVEINFAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIISQ 132

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI------ILSDIS-GDEDH 485
           DGS   A +  S+LAL+DAG+P++  +                      L D++  +E  
Sbjct: 133 DGSLLAACINASTLALIDAGIPMTDYLVACTAASSASSSAADNASAEDPLLDLNTLEEQE 192

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           L  +     G    +    ++ ++       M+    +  +    IL+E+ K   +
Sbjct: 193 LPFLTVGTLGESDKVAVCVLETRVRMERLEGMLAVGIEGCKRLRSILDEVVKGYGK 248



 Score = 41.1 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 32/223 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQD------FFPLTVNYQERTYAVGKIPGGYLRR 80
           +DG+     G T +L +V      K             + V   E  +A     G   RR
Sbjct: 36  ADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQAKVEV---EINFAG--FSGMERRR 90

Query: 81  ESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                +    +   +  +     L      +   + I+++  D   S     + A++ AL
Sbjct: 91  RGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIISQDG--SLLAACINASTLAL 148

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVL------NPRLD---EDQGSLDLFVSGT-----QDA 184
           + +G+P    +V                   +P LD    ++  L     GT     + A
Sbjct: 149 IDAGIPMTDYLVACTAASSASSSAADNASAEDPLLDLNTLEEQELPFLTVGTLGESDKVA 208

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           V ++E    ++  + +   +  G   CK +   + ++ K   K
Sbjct: 209 VCVLE---TRVRMERLEGMLAVGIEGCKRLRSILDEVVKGYGK 248


>gi|255030650|ref|ZP_05302601.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           LO28]
          Length = 106

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 53/84 (63%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               EV ++Y G+V ++  FGAFV      DGLVHIS+L+ ERV K  D++K GD V VK
Sbjct: 1   VREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVK 60

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKP 697
           +++ D +G++ LS K + +   +P
Sbjct: 61  VIEVDQQGRVNLSRKALLEKKEQP 84


>gi|221113409|ref|XP_002164788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 258

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 83/238 (34%), Gaps = 11/238 (4%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           V T       R DGR    +R +  + G + + +GSS     DT+ I  V  G R++ + 
Sbjct: 25  VTTSTKSSSQRQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAV-YGPRDNPKR 83

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
                 + + +      F P +  E  R+         +     +A    +   +     
Sbjct: 84  HQF---SSKGNIFCEVTFAPFSWHE--RVSNQDSLSKEYSSAIVQAFESAVCLESYPKAQ 138

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + I   I E  G+        +S+AL DAG+ +   V         +     +  D SG+
Sbjct: 139 IDIYINILEYSGNCLSYAFIAASIALADAGIEMLDLVTSCESAFSNETSIQRVCVDPSGE 198

Query: 483 EDHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           E  L      +A     + I+ + M  +    + +  +  +     G L I   M + 
Sbjct: 199 EVSLCKGRVVIAYMPSLNKISYLSMQGEE---TIDDSMQNVITCIEGCLRIYKYMKEC 253



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 81/217 (37%), Gaps = 22/217 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+ L+ G I  Q++G+      +T ++  V   R       F      + E T+A    
Sbjct: 45  RPMYLKAGTI-HQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFCEVTFA---- 99

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSM 131
           P  +  R S         S  I ++           K +  + IN++++         + 
Sbjct: 100 PFSWHERVSNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSGNCLS--YAF 157

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYV----LNPRLDED---QGSLDLFVSGTQDA 184
           +AAS AL  +G+     V   +  + N   +    ++P  +E    +G + +    + + 
Sbjct: 158 IAASIALADAGIEMLDLVTSCESAFSNETSIQRVCVDPSGEEVSLCKGRVVIAYMPSLNK 217

Query: 185 VLMVELEANQLSEDVV------LDAIIFGHNECKPVI 215
           +  + ++  +  +D +      ++  +  +   K  I
Sbjct: 218 ISYLSMQGEETIDDSMQNVITCIEGCLRIYKYMKECI 254


>gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
           maculans]
          Length = 280

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 9/228 (3%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I AQ+       GSS    G+T+ +V VT G  E  Q         + 
Sbjct: 14  RLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVT-GPAEGRQSGQRGGQNGQG 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +  NF   +  +  +     +R        R A   VL        T+ +   I   
Sbjct: 73  KVEVEINFAGFSGVDRRKR-KSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQ 131

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIA------MGLVKDGDDFIILSDI-SGDEDH 485
           DGS   A +  ++LAL+DAG+P+S  +               +      L D+ + +E  
Sbjct: 132 DGSLLAACINAATLALIDAGIPMSDYLVACTAASSASASAADNASADDPLLDLNNQEELE 191

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           L  +     G    ++   M+ ++       M+    +  +    IL+
Sbjct: 192 LPFLTVATLGESDKVSVCIMESRVRMERLEGMLAVGIEGCKRMRGILD 239



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ---ERTYAVGKIPGGYLRRESR 83
           +DG+     G T +L +V      +            +   E  +A      G  RR+ +
Sbjct: 36  ADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQGKVEVEINFAG---FSGVDRRKRK 92

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             +    +   +  +     L      +   + I+++  D   S     + AA+ AL+ +
Sbjct: 93  SDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQDG--SLLAACINAATLALIDA 150

Query: 142 GLPFEGPVVGA 152
           G+P    +V  
Sbjct: 151 GIPMSDYLVAC 161


>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
          Length = 266

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 6/228 (2%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+   +   GSS    G T+ + VVT G  E ++   +   T+  
Sbjct: 14  RVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVT-GPTEPQRRGGAGGQTKEA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              ++      ++ +  + G   +R         +A+   L        ++ I   +   
Sbjct: 73  AVTVNLVVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQ 132

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDIS-GDEDHLG 487
           DGS   A +  S+LAL+DAG+P++  +A    G         D    L D++  +E  L 
Sbjct: 133 DGSLLAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQELP 192

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +M     G    +  +  + ++       M+       +     ++ +
Sbjct: 193 YMTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRV 240



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 76/218 (34%), Gaps = 22/218 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY----LRRES 82
           +DG+     G T V+  V      +        T   +E    V  +  G+     R+  
Sbjct: 36  ADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQT---KEAAVTVNLVVAGFSSVDRRKRG 92

Query: 83  RPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R  +    +   I +++           +   + ++V+  D   S     + A++ AL+ 
Sbjct: 93  RNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQDG--SLLAALLNASTLALID 150

Query: 141 SGLPFEGPVVGAQVDYI-------NGQYVLNPRLDEDQGSLDLFVSGT---QDAVLMVEL 190
           +G+P    +               +G   L     +++  L     GT    D V ++  
Sbjct: 151 AGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQELPYMTVGTLGLTDRVAVLVC 210

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           E+  +    +   +  G + CK V + + ++ K   ++
Sbjct: 211 ESR-VQVSRLEGMLAVGVDGCKQVRQFMDRVVKEKGRQ 247


>gi|330952125|gb|EGH52385.1| ribonuclease PH [Pseudomonas syringae Cit 7]
          Length = 186

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 21/189 (11%)

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            R      Y  LP ATGE ++     G    R +   RL  R++   L  +     TL +
Sbjct: 2   GRGGLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYV 61

Query: 426 VSEITESDGSSSMATVCGSSLALMD------------AGVPISKPVAGIAMGLVKDGDDF 473
             ++ ++DG +  A++ G+ +AL D             G P+ + +A +++G+ +     
Sbjct: 62  DCDVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP-- 119

Query: 474 IILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             + D+   ED     D  V  T   G   +Q   +        +   L  A++G   + 
Sbjct: 120 --VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELF 177

Query: 533 NEMSKVLSE 541
                 L++
Sbjct: 178 ELQRAALAD 186



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 23/185 (12%)

Query: 59  LTVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIIN 116
           LT  Y     A G+       R  +     + I R+I RS+R         +    V  +
Sbjct: 6   LTAEYGMLPRATGERNQREASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 64

Query: 117 VMQHDLESSPHVVSMVAASAALMLS------------GLPFEGPVVGAQVDYINGQYVLN 164
           V+Q D        S+  A  AL  +            G P +  +    V    G+ VL+
Sbjct: 65  VIQADGG--TRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLD 122

Query: 165 PRLDED---QGSLDLFVSGTQDAVLMVELEANQLS--EDVVLDAIIFGHNECKPVIEAIS 219
               ED   +  L++ ++ +    + V+  A       + +   +         + E   
Sbjct: 123 LDYLEDSAAETDLNVVMT-SAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQR 181

Query: 220 KLAKM 224
                
Sbjct: 182 AALAD 186


>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
 gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
          Length = 268

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 9/193 (4%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R ++AQ+       GSS    G T+ + VVT G  E  Q    +   QR+
Sbjct: 14  RVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVT-GPSEQGQQQRRVQTAQRD 72

Query: 373 DFMMHYNFLP--CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
              ++ N +    ++ +  + G   +R          A    L        ++ I   + 
Sbjct: 73  VAAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHLFPHSSITISLHVL 132

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDISGDEDHL 486
             DGS   A +  ++LAL+DAG+P++  +A    G         D    L D++  E+  
Sbjct: 133 SQDGSLLAALLNATTLALIDAGIPMTDYIAACTAGSTSTYAAGDDSADPLLDLNNQEEQ- 191

Query: 487 GHMDFKVAGTDSG 499
             + F    T  G
Sbjct: 192 -ELPFLTVATLGG 203



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 20/218 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY----LRRES 82
           +DG+     G T V+  V         Q     T         V  +  G+     ++  
Sbjct: 36  ADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQ-TAQRDVAAINVNVVTAGFSSVDRKKRG 94

Query: 83  RPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R  +    I   I  +            +   + ++V+  D   S     + A + AL+ 
Sbjct: 95  RNDKRTQEIEVTIANAFASNLHTHLFPHSSITISLHVLSQDG--SLLAALLNATTLALID 152

Query: 141 SGLPFEGPVVGAQVD----YINGQYVLNPRLD---EDQGSL-DLFVS--GTQDAVLMVEL 190
           +G+P    +          Y  G    +P LD   +++  L  L V+  G  D V  +  
Sbjct: 153 AGIPMTDYIAACTAGSTSTYAAGDDSADPLLDLNNQEEQELPFLTVATLGGSDRVAALVC 212

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           E+  +    +   ++ G + CK V + + ++ K    E
Sbjct: 213 ESR-VQVSRLEGMLVVGVDGCKQVKQFLDQVVKDKGAE 249


>gi|94985677|ref|YP_605041.1| 30S ribosomal protein S1 [Deinococcus geothermalis DSM 11300]
 gi|94555958|gb|ABF45872.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
          Length = 587

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++    +Q +   + +L ++   L      +  F P      +   ++ ++    GK + 
Sbjct: 153 VLERMQEQDEAFEVEVLEKVRGGLVAQVEGIRAFLPAS---QVDTRRVNDLDPYVGKPLM 209

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             + +   K N      V I+  ++ E + A+   ++I  +    + ++G+VV++ DFG 
Sbjct: 210 VKLIELNRKRN-----RVIISHRAILEAQKAKAREQTIGKLVPGAQ-FEGEVVEITDFGV 263

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           FV+  G  DGLVH S+L+  R     DVVK GD V V+++D D+ R +I LSMK + Q+ 
Sbjct: 264 FVNL-GGIDGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKSLTQDP 322

Query: 695 GK 696
            +
Sbjct: 323 WE 324



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++      +   + +  +G+V  + +FGAFV      +GLVH+S++S  +RV   ++V+K
Sbjct: 320 QDPWEGAVEKYHIGQRVRGKVTNLTNFGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLK 379

Query: 666 EGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           EGD V   +L  D +  +I L ++    +  
Sbjct: 380 EGDEVEAVILRIDPKERRISLGIRQTTDDPW 410



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            KG++  + DFG F+      +GL+HIS+L T+RV   +D+ K+GD +   +L+ D    
Sbjct: 423 VKGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNIDPVEQ 482

Query: 682 KIKLSMK 688
           +  LS +
Sbjct: 483 RASLSRR 489


>gi|213417938|ref|ZP_03351026.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 148

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLP 414
           +E     L G  +      Y  LP AT   +      G    R +   RL  RA+   + 
Sbjct: 8   EEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVD 67

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIA 463
                 +T+ +  ++ ++DG +  A++ G+ +AL D              P+   VA ++
Sbjct: 68  LKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVS 127

Query: 464 MGLVKDGDDFIILSDISGDEDHLGH 488
           +G+V        + D+   ED    
Sbjct: 128 VGIVNGE----AICDLEYVEDSAAE 148



 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
           + +     + I R+I R++R         E  +    +V+Q D        S+  A  AL
Sbjct: 44  KGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRTASITGACVAL 101

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
                       L   P +G V    V  +NG+ + +    ED  
Sbjct: 102 ADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSA 146


>gi|226355432|ref|YP_002785172.1| 30S ribosomal protein S1 [Deinococcus deserti VCD115]
 gi|226317422|gb|ACO45418.1| putative ribosomal protein S1 [Deinococcus deserti VCD115]
          Length = 576

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++    +  +   + +L ++   L      +  F P      +   ++ ++    GK ++
Sbjct: 142 VLEKMQEADEAFEVDVLEKVRGGLVAQVEGIRAFLPAS---QVDTRRVNDLDPYVGKPLQ 198

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             + +   K N      V I+  ++ E + A+    +     E    ++G+VV++ DFG 
Sbjct: 199 VKLIELNRKRN-----RVIISHRAIMEAQKAKAR-EATVGQLEAGAQFEGEVVEITDFGV 252

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           FV+  G  DGLVH S+L+  R     DVVK G+ V V++LD DD R +I LSMK + Q+ 
Sbjct: 253 FVNL-GGIDGLVHRSELTYGRFNHPRDVVKVGEKVQVQVLDVDDGRERINLSMKALTQDP 311

Query: 695 GK 696
            +
Sbjct: 312 WE 313



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           DDG  +I  S  A  +   +     T+   + +   G+V  + +FGAFV      +GLVH
Sbjct: 294 DDGRERINLSMKALTQ---DPWEGATERYSIGQKVNGKVTNLTNFGAFVELESGLEGLVH 350

Query: 649 ISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           +S++S  +RV   ++V+KEGD V   +L  D +  +I L ++    +  
Sbjct: 351 VSEMSWTKRVRHPNEVMKEGDEVEAVILRIDPKDRRISLGIRQTTDDPW 399



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++ D        KG++  + DFG F+      +GL+HIS+L T+RV   +D+ K+G
Sbjct: 397 DPWSALPDRYPPGTQVKGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKG 456

Query: 668 DTVWVKLLDFDD-RGKIKLSMK 688
           D +   +L+ D    +  LS +
Sbjct: 457 DEIEAVILNIDPVEQRASLSRR 478



 Score = 43.7 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD 678
            I  G +V +   G  V      +G++ ++Q+  E V   +  ++ K GDT+   ++  D
Sbjct: 62  DIVDGTIVFIGQDGIAVDIGAKVEGVIPLNQIGDEPVTLEQAQEMYKAGDTIEAYVVRVD 121

Query: 679 -DRGKIKLSMKVVDQNTG 695
               +I LS K  DQ+ G
Sbjct: 122 LPNSQIVLSKKRADQDKG 139


>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 253

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 15/233 (6%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R D R  + +R I  + G + + +GS+    G+ + I  V  G R+          +
Sbjct: 28  TGQRADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAV-YGPRQSSSRQ---LSS 83

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                   + F P + GE  +  A   +E     +  +A+ P +       +T+++   +
Sbjct: 84  STGTLQCDFKFAPFS-GEKRKGYAKDDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIV 142

Query: 430 TESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            E+DG  S+  A +  +SLAL +AG+ +   VA  ++    +    ++  D+S  E+ + 
Sbjct: 143 LENDGSMSALAAAISCASLALANAGIEMLDMVAASSIAYFGES---MLCLDVSLKEEMVQ 199

Query: 488 HMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                V+     + +T +         + +    A++        I   + + 
Sbjct: 200 DGAMLVSYMPSLNEVTHLIQTGLA---TTSQCTKAIELGVDACSQIHTILQEA 249



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 23/231 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAV 70
           RP+  + G I  Q++G+     G   V+  V   R     Q       L  +++   ++ 
Sbjct: 41  RPIYTKAGTI-PQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQCDFKFAPFS- 98

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
           G+   GY +      + E   S ++++++ P        K   QV + V+++D   S   
Sbjct: 99  GEKRKGYAK-----DDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLENDGSMSALA 153

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMV 188
            ++  AS AL  +G+     V  + + Y  G+ +L   +   +   ++     QD  ++V
Sbjct: 154 AAISCASLALANAGIEMLDMVAASSIAYF-GESMLCLDVSLKE---EMV----QDGAMLV 205

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSK 239
                  S + V   I  G        +AI      C++   ++     S+
Sbjct: 206 SYM---PSLNEVTHLIQTGLATTSQCTKAIELGVDACSQIHTILQEALLSE 253


>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
 gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
          Length = 246

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 97/244 (39%), Gaps = 10/244 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R     +        GSS   +G+ + I +VT G  E    +
Sbjct: 5   EIYSPEGLRLDGRRWNELRRFECSINTHPTAADGSSYLEQGNNKLITLVT-GPHEPA--L 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS-RREIGHGRLARRAIHPVLPQTAQFPYT 422
            S     +    +  N    A  E S+ G  + RR +       R     +         
Sbjct: 62  RSQVNPSKATLTVTVNMTKFAAAERSKTGHKNERRILEMQTALVRTFEKNVMLQLYPRTA 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + +   + ++DG    + + G +LAL+DAG+ + + ++GI++GL     D   L D++  
Sbjct: 122 IDVQVHVLQNDGGVLGSMINGITLALIDAGIAMYEYISGISVGLY----DTTPLLDLNRL 177

Query: 483 EDHLGHM-DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           E+         V G    ++ + ++ K+       ++            +++++ +   +
Sbjct: 178 EEQAMSCFTLGVVGKSEKLSLLLVEDKVPLDRLESVMSLGIAGTHRVRDMMDKVLRQHGK 237

Query: 542 SRLQ 545
            RL+
Sbjct: 238 IRLE 241



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 76/207 (36%), Gaps = 11/207 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G   ++  V          +       LTV      +A  +      + E 
Sbjct: 36  ADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKATLTVTVNMTKFAAAERSKTGHKNER 95

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           R  E +  + R  ++++  +     +    V ++V+Q+D      +  +   + AL+ +G
Sbjct: 96  RILEMQTALVRTFEKNV--MLQLYPRTAIDVQVHVLQNDGGVLGSM--INGITLALIDAG 151

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
           +     + G  V   +   +L+    E+Q      L V G  + + ++ +E   +  D +
Sbjct: 152 IAMYEYISGISVGLYDTTPLLDLNRLEEQAMSCFTLGVVGKSEKLSLLLVEDK-VPLDRL 210

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCAK 227
              +  G      V + + K+ +   K
Sbjct: 211 ESVMSLGIAGTHRVRDMMDKVLRQHGK 237


>gi|307243636|ref|ZP_07525779.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493005|gb|EFM65015.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 720

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 30/248 (12%)

Query: 455 ISKPVAGIAMGLVK-------DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           + + VAGI+ GL K       +  DF  ++D+      LG   FK A     +   +  +
Sbjct: 491 LLEHVAGISSGLAKNIVAYRDENGDFEDINDLKNV-KRLGPAAFKQAAGFIRLPNAKNTL 549

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
              G+          +A    L +L      +  SRL   +   +   +    D++ + I
Sbjct: 550 DNTGVHPE-----SYKACLAMLDLLAYSLDDVDASRLDQIDKKVKDYGL----DKLSSDI 600

Query: 568 GMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G+G   ++ I+E+      +I + GT  I  + + ++E             E   +  G 
Sbjct: 601 GVGQATLKDIIEEIKKPGRDIRESGTKPILRTDVMQLE-----------DLEEGMVLNGT 649

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  V+DFGAFV      DGLVHIS++S + V   SD +  GD V VK++  D D+G++ L
Sbjct: 650 VRNVVDFGAFVDIGIKNDGLVHISKISNKMVKNASDFLTVGDIVMVKVIGIDKDKGRVSL 709

Query: 686 SMKVVDQN 693
           SMK V Q+
Sbjct: 710 SMKGVSQD 717


>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
 gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
          Length = 211

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 15/176 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +GDT+ +  V  G +          GT++N
Sbjct: 5   RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAV-YGPK---------PGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +             +  ++G     E  +  + +R +  +   T     T  ++ ++   
Sbjct: 55  ENPEKACIEVIWKPKTGQIGKV---EKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHD 111

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           DG+     +  +  AL+DAG+P+      I   L + G  ++IL     +E  +  
Sbjct: 112 DGALLTCAINAACAALVDAGIPMKHLAVAICCCLSESG--YVILDPTKLEEQKMKG 165



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 18/150 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G+T VLA V   +      +  +   + V ++ +T  +GK+          
Sbjct: 27  AHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKACIEVIWKPKTGQIGKV---------- 76

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             E E  +  ++ R+++ +        T   + V     + +    ++ AA AAL+ +G+
Sbjct: 77  --EKEYEM--ILKRTLQTICVLTINPNTTTSVIVQVVHDDGALLTCAINAACAALVDAGI 132

Query: 144 PFEGPVVGAQVDYIN-GQYVLNPRLDEDQG 172
           P +   V         G  +L+P   E+Q 
Sbjct: 133 PMKHLAVAICCCLSESGYVILDPTKLEEQK 162


>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
 gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
          Length = 239

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 16/177 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++   R DGR+   +R  S     L R HGS+ + +GDT  ++    G +       +  
Sbjct: 1   MEGGSRADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDT-VVLAAVYGPK-----PGTRK 54

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G       +   + P       + G   R+E  +    +R +  +   T     T  +V 
Sbjct: 55  GENPEKASIEVVWKP-------KTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVL 107

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           ++   DGS     +  S  AL  AG+P+      I  G++   D+  ++ D S  E+
Sbjct: 108 QVVGDDGSLLPCAINASCAALAFAGIPMKHLAVAICCGVM---DNGAVILDTSTAEE 161



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 26/218 (11%)

Query: 20  TGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGG 76
           TG    ++ G+     G+TVVLA V   +      +  +   + V ++ +T  +G+    
Sbjct: 21  TGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEVVWKPKTGQIGR---- 76

Query: 77  YLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
                    E E  ++  + R+++   L +      T V++ V+  D    P   ++ A+
Sbjct: 77  --------QEREYEMT--LKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLLPC--AINAS 124

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL---DEDQGSL-DLFVSGTQDAVLMVE- 189
            AAL  +G+P +   V      ++   V+       ++   S   L    ++ +V   + 
Sbjct: 125 CAALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEEQQAKSFAHLVFPNSRKSVDSKDP 184

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           ++ ++ SE  ++  I  G          I +     +K
Sbjct: 185 MQKDEESERGLISCITHGTMSEDNYFNCIERGIAASSK 222


>gi|323697658|ref|ZP_08109570.1| RNA binding S1 domain protein [Desulfovibrio sp. ND132]
 gi|323457590|gb|EGB13455.1| RNA binding S1 domain protein [Desulfovibrio desulfuricans ND132]
          Length = 486

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 15/207 (7%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
           V     GI   +    IGG+   ++  A   A      + +      + + LQ   F P 
Sbjct: 88  VGKDSGGIKLSRAISGIGGM--AMLEEAKAGALPVEGKVESTCKGGFNVTILQRRAFCPV 145

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
            +I A   +     +G   + +   +E  G  + +     V+           A E  ++
Sbjct: 146 SQIDARFVENPEEYVGQTLEFLITKLENHGRNIVVSRRALVER---------EAAESAQT 196

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
             D  +V    +G V ++  FGAFV      +GLVHISQL   RV+   +VV  G  V  
Sbjct: 197 FVDETKVGDEVEGTVTRLAAFGAFVEIMPGLEGLVHISQLGYGRVSHPEEVVSVGQKVRA 256

Query: 673 KL--LDFDDRGK--IKLSMKVVDQNTG 695
           K+  LD DD+G+  I LSMK + QN  
Sbjct: 257 KITKLDKDDKGRLKISLSMKELAQNPW 283



 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 10/138 (7%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
                 V+ +G KV   I      K++ DD G +KI+ S       A+    +++    V
Sbjct: 241 VSHPEEVVSVGQKVRAKIT-----KLDKDDKGRLKISLSMKEL---AQNPWDTLSATFAV 292

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
             I  G+VV++ DFGAFV      DGLVH+S++S T+RV K +D+VKEGD V VK+   D
Sbjct: 293 GDIVSGKVVRLADFGAFVEIAPGVDGLVHVSEMSYTKRVNKPADMVKEGDAVTVKIKSID 352

Query: 679 -DRGKIKLSMKVVDQNTG 695
            D+ +I LSMK  + +  
Sbjct: 353 LDKRRIGLSMKDAEGDPW 370



 Score = 44.1 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +      L+  +A  +    + D  +  +  +G V K   FG FV       GL+  S +
Sbjct: 353 LDKRRIGLSMKDAEGDPWAGVADRYQAGQKVEGVVEKQEQFGIFVQLEPGITGLLPKSVI 412

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           +        + ++ GDTV V + +      KI LS
Sbjct: 413 ARSEKPAAFEKLRAGDTVEVVIGEVKTGERKISLS 447


>gi|121551159|gb|ABM55769.1| RpsA [Pasteuria ramosa]
          Length = 392

 Score =  104 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            ID D    I S      EAA+    +  +  E+  +  G V ++ DFGAFV   GA DG
Sbjct: 153 EIDQDSNKLILSCRAVHEEAAQHQREATFNNIEIGSVVDGIVRRLTDFGAFVDV-GAVDG 211

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           LVHISQ+S +RV   SDV+  GD V  K+L FD + G+I LS++       
Sbjct: 212 LVHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIRDTQPGPW 262



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA---REMIRSITDVPEVN----KIYK 624
           ++    V      +NI D+   K+          +   R+         E       I K
Sbjct: 217 QISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIRDTQPGPWSGVEDQLVENDIVK 276

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V +++ FGAFV      +GL+HIS++S   +   S+++KEG  + VK+L+ D +  ++
Sbjct: 277 GVVKRLVSFGAFVEILPGVEGLMHISEISHRHIVTPSEILKEGQEILVKILNVDSNARRV 336

Query: 684 KLSMKVVDQNTGK 696
            L+M  V+QNT +
Sbjct: 337 SLTMCDVEQNTSQ 349



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              + T   E+  +  G V K+    A +      + ++ IS+LS  R+ +  D++K  D
Sbjct: 3   EEMNSTIPFEIGSLVTGSVTKIDKNQALIKIAEDIEAILPISELSCLRINEVGDMLKLDD 62

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVD 691
            + +++L  D +  K  LS + VD
Sbjct: 63  ELELEVLRLDEEENKFILSKRAVD 86


>gi|218678596|ref|ZP_03526493.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CIAT
           894]
          Length = 112

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 1/100 (1%)

Query: 161 YVLNPRLDE-DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           YVLNP LDE D+ SLDL V+GT DAVLMVE EA +L+E+V+L A++FGHN  +PV++AI 
Sbjct: 1   YVLNPHLDEMDESSLDLVVAGTYDAVLMVESEAKELNEEVMLGAVMFGHNGFQPVLDAII 60

Query: 220 KLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIP 259
           KLA++ AKEP     +D+S LE EM  + + +LR      
Sbjct: 61  KLAEVAAKEPRDFQPEDYSALETEMLGLAEGELRQCLQDH 100


>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
           exosome [Pichia pastoris GS115]
 gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
           exosome [Pichia pastoris GS115]
 gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Pichia pastoris CBS 7435]
          Length = 246

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 96/243 (39%), Gaps = 13/243 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++        GS+    G+T+ + ++  G  E     
Sbjct: 2   ELYSPEGLRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLN-GPHEPT--- 57

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S   TQ+    +  +  P +T E  ++    RR      + +     V+         +
Sbjct: 58  RSQMNTQKGSLDIKLHVSPFSTTERRKVTRNDRRIQELSTILKNTFEQVVILKNYPRTII 117

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS-GD 482
            +   +   DG    A     +LAL+DAG+ +   ++ ++ G+  +     IL D++  +
Sbjct: 118 EVNVRVLAQDGGLLAACCNAITLALVDAGIALYDYISAVSAGVFDNQ----ILLDLNRLE 173

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           E  L  +   V G    ++ +  + +   + ++ +    + A  G   + ++M   +++ 
Sbjct: 174 EQDLSSVTIGVVGKTKKLSLVLSETR---LPQDRLAKVFEVAVNGCHQLKDQMDAQVAKK 230

Query: 543 RLQ 545
             +
Sbjct: 231 GRE 233



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 71/215 (33%), Gaps = 15/215 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESR 83
           +DG+     G T ++  +         Q       L +      ++         R+ +R
Sbjct: 33  ADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSLDIKLHVSPFST-----TERRKVTR 87

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                  +S ++  +     +     +   +V + V+  D           A + AL+ +
Sbjct: 88  NDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVLAQDGGLLA--ACCNAITLALVDA 145

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRL--DEDQGSLDLFVSGTQDAVLMVELEANQLSEDV 199
           G+     +        + Q +L+     ++D  S+ + V G    + +V  E  +L +D 
Sbjct: 146 GIALYDYISAVSAGVFDNQILLDLNRLEEQDLSSVTIGVVGKTKKLSLVLSE-TRLPQDR 204

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           +        N C  + + +        +E  + + 
Sbjct: 205 LAKVFEVAVNGCHQLKDQMDAQVAKKGREKAITEE 239


>gi|189205919|ref|XP_001939294.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975387|gb|EDU42013.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1214

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-----------SITDVPEVNKIYKGQV 627
           EQ    V  D+ G  +    S  +    +                + D P + KIY G+V
Sbjct: 197 EQNDELVFEDEFGRTRTVKPSNKQRTRKKYRDEDLDEFRRPPTPELDDEPVLYKIYNGKV 256

Query: 628 VKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
             + DFG FV+  G +   DGLVH++Q+   RV   SD+V     V VK++   + G+I 
Sbjct: 257 TGIKDFGCFVNIQGVKGKVDGLVHVTQMMEGRVNHPSDLVSRWQEVKVKVIKT-ENGRIS 315

Query: 685 LSMKVVDQNTGKPIV 699
           LSMK VDQ TG+ + 
Sbjct: 316 LSMKEVDQQTGRDLA 330


>gi|330935553|ref|XP_003305025.1| hypothetical protein PTT_17759 [Pyrenophora teres f. teres 0-1]
 gi|311318215|gb|EFQ86962.1| hypothetical protein PTT_17759 [Pyrenophora teres f. teres 0-1]
          Length = 1214

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-----------SITDVPEVNKIYKGQV 627
           EQ    V  D+ G  +    S  +    +                + + P + KIY G+V
Sbjct: 197 EQNDELVFEDEFGRTRTVKPSNKQRTRKKYRDEDLDEFRRPPTPELDEEPVLYKIYNGKV 256

Query: 628 VKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
             + DFG FV+  G +   DGLVH++Q+   RV   SD+V     V VK++   + G+I 
Sbjct: 257 TGIKDFGCFVNIQGVKGKVDGLVHVTQMMEGRVNHPSDLVSRWQEVKVKVIKT-ENGRIS 315

Query: 685 LSMKVVDQNTGKPIV 699
           LSMK VDQ TG+ + 
Sbjct: 316 LSMKEVDQQTGRDLA 330


>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
          Length = 240

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 16/178 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M++   R DGR+   +R  +     L R HGS+ + +GDT  ++    G +       + 
Sbjct: 1   MMEGGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDT-VVLAAVYGPK-----PGTR 54

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G       +   + P       + G   R+E  +    +R +  +   T     T  +V
Sbjct: 55  KGENPEKASIEVVWKP-------KTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVV 107

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
            ++   DGS     +  S  AL  AG+P+      I+ G++   D+ +++ D S  E+
Sbjct: 108 LQVVGDDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVM---DNGVVILDTSRAEE 162



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 88/234 (37%), Gaps = 41/234 (17%)

Query: 20  TGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGG 76
           TG    ++ G+     G+TVVLA V   +      +  +   + V ++ +T  +G+    
Sbjct: 22  TGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEVVWKPKTGQIGR---- 77

Query: 77  YLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
                    E E  ++  + R+++   L +      T V++ V+  D        ++ A+
Sbjct: 78  --------QEREYEMT--LKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSC--AINAS 125

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL---DEDQGSL-DLFVSGTQDAV----- 185
            AAL  +G+P +   V      ++   V+       ++   S   L    ++ +V     
Sbjct: 126 CAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDP 185

Query: 186 ----------LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAKE 228
                     L+  +    +SED   + I  G      + + + K L K  +++
Sbjct: 186 TQRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQKEVSRD 239


>gi|331269557|ref|YP_004396049.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1-like protein [Clostridium botulinum
           BKT015925]
 gi|329126107|gb|AEB76052.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1-like protein [Clostridium botulinum
           BKT015925]
          Length = 634

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 20/250 (8%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           D  +P+ +          +D D  I      GDE     +  K   +D  I   +++++ 
Sbjct: 325 DGIIPLKEA--------TRDEDVLIKDLFNVGDEVEAKVISLK--NSDDCIVLSKIEIER 374

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
               + I   A        + I   ++  +      +  F P   +     D +   IG 
Sbjct: 375 EEAFKEI-ENAFNNKGEITISIKESVNGGIIGRYKGVRVFVPASHVELFHVDDLSTYIGQ 433

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
             +V   I+E       ++  GT  +AS     ++A  +      +  E +++ +G++ +
Sbjct: 434 DMQV--KIIEFK-----VNRKGTKIVASRRELLVKAQAQKKEGAWNSLEKDQVVEGEIRR 486

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  FGAFV      DGL+H+S++S  RV K  DV+K G+ V V +LD D +  K+ LS+K
Sbjct: 487 LTSFGAFVDV-NGIDGLLHVSEISWGRVEKPEDVLKIGEKVKVCILDIDKENKKLSLSIK 545

Query: 689 VVDQNTGKPI 698
            + ++    I
Sbjct: 546 KLTEDPWTNI 555



 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 33/257 (12%)

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           + I + V G  +G  K      +    S  E           G D  +  ++  +   G 
Sbjct: 393 ISIKESVNGGIIGRYKG---VRVFVPASHVELFHVDDLSTYIGQDMQVKIIEFKVNRKGT 449

Query: 513 S-----ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-------- 559
                   ++V A  Q K G  + L +   V  E R  L  F   V++  I         
Sbjct: 450 KIVASRRELLVKAQAQKKEGAWNSLEKDQVVEGEIRR-LTSFGAFVDVNGIDGLLHVSEI 508

Query: 560 ----PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
                ++  +V+ +G KV   I       ++ID +      S          +   +I +
Sbjct: 509 SWGRVEKPEDVLKIGEKVKVCI-------LDIDKENKKLSLSIKKLT----EDPWTNIEE 557

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
              +  I  G+VV+  DFGAFV      DGLVH+S++S +R+ K SDV+K  + V  K+L
Sbjct: 558 KYPIGSIVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPSDVLKVDEEVKAKIL 617

Query: 676 DFDDRG-KIKLSMKVVD 691
             +  G ++ LS+K  +
Sbjct: 618 SVNKDGKRLSLSIKEAE 634



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 41/93 (44%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +  +K++  + +E+      +        +    KGQ++ + +  AFV+    +DG+
Sbjct: 268 IIKEAILKMSEHTNSELNEQLAYMEQNDIQVAIGDTVKGQIISLNEKEAFVNIGYKKDGI 327

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + + + +      D+   GD V  K++   +
Sbjct: 328 IPLKEATRDEDVLIKDLFNVGDEVEAKVISLKN 360


>gi|291532398|emb|CBL05511.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Megamonas hypermegale ART12/1]
          Length = 83

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 56/82 (68%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           MI ++T   EV  +YKG+V ++M+FGAFV     ++GL HISQL+ ERV K  DVV  GD
Sbjct: 1   MINALTAEVEVGAVYKGKVTRIMNFGAFVEILPGKEGLCHISQLAKERVGKVEDVVNIGD 60

Query: 669 TVWVKLLDFDDRGKIKLSMKVV 690
            + VK+ + D +G++ LS KV+
Sbjct: 61  ELEVKVTEIDRQGRVNLSHKVL 82


>gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays]
 gi|219887423|gb|ACL54086.1| unknown [Zea mays]
          Length = 240

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 16/178 (8%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M++   R DGR+   +R  +     L R HGS+ + +GDT  ++    G +       + 
Sbjct: 1   MMEGGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDT-VVLAAVYGPKSG-----TR 54

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G       +   + P       + G   R+E  +    +R +  +   T     T  +V
Sbjct: 55  KGENPEKASIEVVWKP-------KTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVV 107

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
            ++   DGS     +  S  AL  AG+P+      I+ G++   D+ +++ D S  E+
Sbjct: 108 LQVVGDDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVM---DNGVVILDTSRAEE 162



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 41/234 (17%)

Query: 20  TGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGG 76
           TG    ++ G+     G+TVVLA V   +S     +  +   + V ++ +T  +G+    
Sbjct: 22  TGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEVVWKPKTGQIGR---- 77

Query: 77  YLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
                    E E  ++  + R+++   L +      T V++ V+  D        ++ A+
Sbjct: 78  --------QEREYEMT--LKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSC--AINAS 125

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL---DEDQGSL-DLFVSGTQDAV----- 185
            AAL  +G+P +   V      ++   V+       ++   S   L    ++ +V     
Sbjct: 126 CAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDT 185

Query: 186 ----------LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAKE 228
                     L+  +    +SED   + I  G      + + + K L K  +++
Sbjct: 186 TQRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQKEASRD 239


>gi|50304197|ref|XP_452048.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641180|emb|CAH02441.1| KLLA0B11638p [Kluyveromyces lactis]
          Length = 1111

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +I N++      ++  +E T + +++ +           A  ++      ++   P ++K
Sbjct: 121 RIFNIVHSSNVAVKTEIEDTKSALSLPNTTVSWEGIEEKASNKSRFRKNETVDPEPVLDK 180

Query: 622 IYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +Y G+V  V  FG FV   G R    DGLVH+S+LS+  V K  DVV     V+VK++  
Sbjct: 181 VYPGKVQNVTKFGCFVRIFGVRNTNVDGLVHVSELSSSHVDKPEDVVHRNQDVFVKVIKI 240

Query: 678 DDRGKIKLSMKVVDQNTG 695
            + GKI L+MK +DQ+TG
Sbjct: 241 QNNGKISLAMKGIDQSTG 258


>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
          Length = 238

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 4/179 (2%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+       GSS    G T+ + VVT  + + ++     +G    
Sbjct: 14  RVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDMA 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              ++      ++ +  + G   +R          A+   L        ++ I   +   
Sbjct: 74  AINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLSQ 133

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDISGDEDHLG 487
           DGS   A +  ++LAL+DAG+P+S  +A    G         D+   L D++  E+   
Sbjct: 134 DGSLLAALINATTLALIDAGIPMSDYIAACTAGSTSTYAAGDDNADPLLDLNNQEEQEL 192



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 20/183 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY----LRRES 82
           +DG+     G T V+  V      +  +       +       V  +  G+     ++  
Sbjct: 36  ADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRD--MAAINVNVVVAGFSSVDRKKRG 93

Query: 83  RPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R  +    I   I  ++           +   + ++V+  D   S     + A + AL+ 
Sbjct: 94  RNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLSQDG--SLLAALINATTLALID 151

Query: 141 SGLPFEGPVVGAQVD----YINGQYVLNPRLD---EDQGSL-DLFVS--GTQDAVLMVEL 190
           +G+P    +          Y  G    +P LD   +++  L  L V+  G  D V ++  
Sbjct: 152 AGIPMSDYIAACTAGSTSTYAAGDDNADPLLDLNNQEEQELPFLTVATHGDTDRVAVLVC 211

Query: 191 EAN 193
           E+ 
Sbjct: 212 ESR 214


>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
 gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
           RN66]
          Length = 250

 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 22/248 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQV--GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            ++  +  R+DGR    +R IS ++  G    +  S  + +G T+ ++    G       
Sbjct: 9   EILNSEGFRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTK-LITSICGP------ 61

Query: 363 VDSLSGTQRNDFMMHYNF--LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           +  L+ + ++   +H NF   P  T +  + G   R    +  +  R     +       
Sbjct: 62  IPLLNSSSQSGIQLHCNFRMSPFCTPDRRKRGKNDRFCTENSLIITRTFESAI-SEIYVK 120

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I   + E+DG    A +  +SLAL +AG+ +   V    +GL       I L DI 
Sbjct: 121 SQIIININVLEADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGR----IPLYDIV 176

Query: 481 GDEDH--LGHMDFKVAGTDSGITAMQMDMKIGGISENI---MVMALQQAKRGRLHILNEM 535
             E       M F +  TD  I  + M++    + E+I   ++     A +    IL  +
Sbjct: 177 QAEFDVLKTIMSFAIYSTDENIAPITMELNTK-VDEDILNLLLEHSAAACKHISKILRNI 235

Query: 536 SKVLSESR 543
            +  +  R
Sbjct: 236 LRQHAIRR 243



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 74/203 (36%), Gaps = 21/203 (10%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
            SD +V    G+T ++ ++     L     Q    L  N++   +          R+  +
Sbjct: 40  LSDSSVYYEQGQTKLITSICGPIPLLNSSSQSGIQLHCNFRMSPFCT-----PDRRKRGK 94

Query: 84  PTENEILISRMIDRSIRPLFSK-CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
                   S +I R+     S+   K++  + INV++ D        ++ A S AL  +G
Sbjct: 95  NDRFCTENSLIITRTFESAISEIYVKSQIIININVLEADGGV--RSAAINATSLALANAG 152

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF-------VSGTQDAVLMVELEANQL 195
           +  +  V+ + +          P  D  Q   D+        +  T + +  + +E N  
Sbjct: 153 IGMKDLVISSTIGLYGRI----PLYDIVQAEFDVLKTIMSFAIYSTDENIAPITMELNTK 208

Query: 196 SEDVVLDAIIFGHNECKPVIEAI 218
            ++ +L+ ++         I  I
Sbjct: 209 VDEDILNLLLEHSAAACKHISKI 231


>gi|324501835|gb|ADY40813.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 [Ascaris
           suum]
          Length = 1223

 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVA 658
           E          I + P V KIY G+V  +  FGAFV   G R   +GL+HISQ+  ERV 
Sbjct: 238 ETSRGWAQREPIDEEPVVGKIYTGRVNSIQSFGAFVQLEGFRQRFEGLLHISQIRKERVN 297

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +DV+  G  + VK+L F + GKI LSMK VDQ+TG+ +
Sbjct: 298 AVADVLNRGQKIKVKVLKF-ENGKISLSMKEVDQDTGEDL 336


>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
          Length = 403

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G  V   +       + IDDD      S    E           T    
Sbjct: 233 HVDKPSDVLKAGQDVKIKV-------IGIDDDRHRISLSIKQTEPS----PFEQATADLN 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D
Sbjct: 282 EGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNID 341

Query: 679 DR-GKIKLSMKVVDQNT 694
               +I LS+K  D N 
Sbjct: 342 PSDRRISLSIKAADSNA 358



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    IE  RE     +     V  + +G+V ++ +FG
Sbjct: 153 YIGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
            F+   G  DGLVHIS++S + V K SDV+K G  V +K++   DDR +I LS+K  + +
Sbjct: 213 GFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQTEPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|6320850|ref|NP_010929.1| Prp22p [Saccharomyces cerevisiae S288c]
 gi|130830|sp|P24384|PRP22_YEAST RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP22
 gi|4234|emb|CAA41530.1| PRP22 [Saccharomyces cerevisiae]
 gi|603605|gb|AAB64546.1| Prp22p: pre-mRNA splicing factor RNA helicase [Saccharomyces
           cerevisiae]
 gi|207346029|gb|EDZ72649.1| YER013Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273758|gb|EEU08683.1| Prp22p [Saccharomyces cerevisiae JAY291]
 gi|285811636|tpg|DAA07664.1| TPA: Prp22p [Saccharomyces cerevisiae S288c]
          Length = 1145

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHI 649
           KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLVHI
Sbjct: 152 KIPAKIEAKIEEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLVHI 211

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           S++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 212 SEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|227517|prf||1705293A RNA helicase-like protein
          Length = 1144

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHI 649
           KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLVHI
Sbjct: 152 KIPAKIEAKIEEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLVHI 211

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           S++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 212 SEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|151944721|gb|EDN62980.1| RNA-dependent ATPase/ATP-dependent RNA helicase [Saccharomyces
           cerevisiae YJM789]
          Length = 1145

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHI 649
           KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLVHI
Sbjct: 152 KIPAKIEAKIEEEAQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLVHI 211

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           S++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 212 SEMSEQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|259145919|emb|CAY79179.1| Prp22p [Saccharomyces cerevisiae EC1118]
          Length = 1145

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 4/107 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHI 649
           KI +   A+IE   + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLVHI
Sbjct: 152 KIPAKIEAKIEEEAQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLVHI 211

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           S++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 212 SEMSEQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
 gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
          Length = 687

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 22/176 (12%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKV--------------IRGIVEQTGAKVNIDD 589
            +L      +E   +   ++  +   G  V                  VE     +++ D
Sbjct: 454 EELDNLWDELEEGQVVKGKVARLTDFGAFVEVNGLDGLLHVSDIAWSRVEHPSDVLSVGD 513

Query: 590 DGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +  VKI   +  +   +        +   +  +  EV  +  G+VV ++DFGAFV     
Sbjct: 514 EIEVKILKLNQEKNRISLGRKQLLEKPFEAFANHHEVGDVVTGKVVNLLDFGAFVEVADG 573

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            +GLVH+S++S E V K SD +  GD + VK++  D +  K+ LS+K + +   +P
Sbjct: 574 VEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDKEEEKVGLSIKALKEAPERP 629



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +I KG V+ V D   FV      DG++ + +++ E      +    GD + V ++  DD
Sbjct: 296 KEIVKGTVIDVKDDEVFVDIQFRADGIIKLDEMTEEEAKDPKNSFNVGDEIDVFVIKLDD 355

Query: 680 -RGKIKLSMKVVD 691
             G + LS + V+
Sbjct: 356 GEGNVALSTRRVE 368



 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 77/208 (37%), Gaps = 13/208 (6%)

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
              A T   I    +   +   ++   + +L+ + +           V+     ++    
Sbjct: 257 IAGASTPDKIIEEVVS-SMDEFTKEEFMNSLEDSLKKIYPKEIVKGTVIDVKDDEVFVDI 315

Query: 551 PRVEIMAIPPDQIRNV---IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
                  I  D++             +   ++    K++ D +G V +++  +  +    
Sbjct: 316 QFRADGIIKLDEMTEEEAKDPKNSFNVGDEIDVFVIKLD-DGEGNVALSTRRVEGM---- 370

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++ + +    E +++  G+VV     G  V+     +G V  SQ++T  V      V  G
Sbjct: 371 KVWQELAQKAENDELVHGEVVSFNKGGLTVNV-NGVNGFVPASQIATYFVKNFKKFV--G 427

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           +   +K++  D+R  ++ LS K V +  
Sbjct: 428 EQWDLKIISIDERKNRLVLSRKDVVEEE 455


>gi|190405574|gb|EDV08841.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1145

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 4/107 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHI 649
           KI +   A+I    + I S+   P ++K+Y+G+V  +  FG FV   G R    DGLVHI
Sbjct: 152 KIPAKIEAKIGEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLVHI 211

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           S++S +R     DVV++G  ++V+++   + GKI LSMK +DQ++G+
Sbjct: 212 SEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHSGE 258


>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 242

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 92/241 (38%), Gaps = 9/241 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++        GSS   +G+T+ I +V  G  E E   
Sbjct: 5   ELYSPEGLRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVE-GPLEPE--T 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S     R    ++      +T E  +     +R I       R     +         +
Sbjct: 62  RSQVDVSRATIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS-GD 482
           ++   +   DG      +  ++LAL+DAG+ +   VA +A GL  +      L D++  +
Sbjct: 122 KVNLHVLAQDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETP----LLDLNTLE 177

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           E+ + H+   V G    +  + ++ K+       ++            ++++ ++   E 
Sbjct: 178 ENDMSHLTLGVIGKSEKLAVLMLEDKMPMDRLEPVLAIGIAGSHRIRELMDQETRRHGER 237

Query: 543 R 543
           R
Sbjct: 238 R 238



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN 87
            G+     G T V+  V      +             E   AV        ++  +  + 
Sbjct: 37  TGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRAT-IEVNIAVASFSTIERKKRLKNEKR 95

Query: 88  EILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
            I +   ++R+           +   +V ++V+  D      +  + A + AL+ +G+  
Sbjct: 96  IIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQDGGMLATM--INATTLALIDAGIAM 153

Query: 146 EGPVVGAQVDYINGQYV--LNPRLDEDQGSLDLFVSGTQDAVLMVELEAN 193
              V        N   +  LN   + D   L L V G  + + ++ LE  
Sbjct: 154 YDYVAAVAAGLHNETPLLDLNTLEENDMSHLTLGVIGKSEKLAVLMLEDK 203


>gi|126640155|ref|YP_001083139.1| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
          Length = 174

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 20/175 (11%)

Query: 380 FLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
            LP +T       +  G  + R     RL  R++  ++        T+ I  ++ ++DG 
Sbjct: 1   MLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG 60

Query: 436 SSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  A++ G+++AL+D              P+   VA I++G+ +D     +L D+  +ED
Sbjct: 61  TRTASITGAAVALVDAMNVLLAQKKIKQDPLKGLVAAISVGMYQDE----VLLDLCYEED 116

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  V  T +G    +Q   +    +       L+ A++G   ++ +  + 
Sbjct: 117 SNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEA 171



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 81  ESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
             + T     I R+I RS+R +    K  +N   +  +V+Q D        S+  A+ AL
Sbjct: 16  RGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG--TRTASITGAAVAL 73

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
           +           +   P +G V    V     + +L+   +ED   Q  L++ ++   + 
Sbjct: 74  VDAMNVLLAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTDLNVVMTQAGEF 133

Query: 185 V-LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           + +    E    +       +         +I+   + 
Sbjct: 134 IEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEA 171


>gi|110589244|gb|ABG77131.1| polyribonucleotide nucleotidyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 137

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 76/105 (72%)

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
           T  GI A+QMD+KI GI++ IM +AL+QAK GRLHIL+EM++V+S  R ++ E  PR+  
Sbjct: 30  TAQGINALQMDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRIIE 89

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           + I PD+IR+VIG GG  IRGI E TGA V+I DDG VKI S   
Sbjct: 90  IKINPDKIRDVIGKGGVTIRGITEATGATVDITDDGIVKIFSVEQ 134


>gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
           DSM 20548]
 gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
           DSM 20548]
          Length = 686

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    VE     +N+ D+  VKI   +  +   +        +   +  +  EV  +  
Sbjct: 496 DIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVT 555

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV ++DFGAFV      +GLVH+S++S E V K SD +  GD + VK++  D D  K+
Sbjct: 556 GKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKV 615

Query: 684 KLSMKVVDQNTGKP 697
            LS+K + +   +P
Sbjct: 616 GLSIKALKEAPERP 629



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 4/180 (2%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           +EN    A   AK     I+       + ++L          +  I   +   +  +   
Sbjct: 192 TENRQEAAKSLAKEVDCMIVAGGFNSSNTNKLYQVANLYCKNVFRIETVKDLPLQKLSKF 251

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
              GI+        I ++    +   +  E   + E         E   I KG V+ V D
Sbjct: 252 KKVGIIAGASTPDEIIEEVVSSMDEFTKEEFMNSLEDSLKKIYPKE---IVKGTVIDVKD 308

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              FV      DG++ + +++ E      +    GD + V ++  DD  G + LS + V+
Sbjct: 309 DEVFVDIQFRADGIIKLDEMTEEEAKDPKNSFNVGDEIDVFVIKLDDGEGNVSLSTRRVE 368



 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + +DD +G V +++  +  +    ++ + + +  E +++  G V      G  V+  G  
Sbjct: 351 IKLDDGEGNVSLSTRRVEGM----KVWKDLAEKAENDELVHGVVSGFNKGGLTVNVEG-I 405

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           +G V  SQ++T  V      V  G+   +K++  D+R  ++ LS K V ++ 
Sbjct: 406 NGFVPASQIATYFVKNFKKFV--GEEWDLKIISIDERKNRLVLSRKEVVEDE 455


>gi|227485051|ref|ZP_03915367.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236884|gb|EEI86899.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 692

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 22/176 (12%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKV--------------IRGIVEQTGAKVNIDD 589
            +L +    +E   +   ++  +   G  V                  VE     +N+ D
Sbjct: 457 AELDDLWDELEEGQVVKGKVARLTDFGAFVEVNGLDGLLHVSDIAWTRVEHPSDVLNVGD 516

Query: 590 DGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +  VKI   +  +   +        +      +  +V  + +G+VV ++DFGAFV     
Sbjct: 517 EIEVKILKLNKEKNRISLGRKQLIEKPFEKFVNEHQVGDVVEGKVVNLLDFGAFVEVADG 576

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            +GLVH+S++S + V K SD +  GDT+ VK++  D D  K+ LS+K + +   +P
Sbjct: 577 VEGLVHVSEISWDHVEKPSDELNVGDTIEVKIISIDKDEEKVGLSIKALKEAPERP 632



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            ++  G V+ V D   FV      DG+V + +++ E      +  + G  + V ++  DD
Sbjct: 299 KEVITGTVINVKDDEVFVDIQYRADGIVKLDEMTEEEQKDPKNSFEVGADIDVYVIKLDD 358

Query: 680 -RGKIKLSMKVVD 691
             G + LS + V+
Sbjct: 359 GEGNVSLSTRRVE 371



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + +DD +G V +++  +  ++A +E+        E  ++  G+V+     G  V      
Sbjct: 354 IKLDDGEGNVSLSTRRVEGMKAWKELSDKF----ENEELVHGKVISFNKGGLTVEV-NGV 408

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           +G V  SQ++T  V      V  G+   +K++  D+R  ++ LS K V +     +
Sbjct: 409 NGFVPASQIATYFVKNLKKFV--GEEWDLKIISIDERKNRLVLSRKDVLEAELDDL 462


>gi|227510313|ref|ZP_03940362.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189965|gb|EEI70032.1| 30S ribosomal protein S1 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 413

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + ID     + ++  ++ + + A E  + +  + E   I +G+V ++ +FGAFV   G  
Sbjct: 165 IEIDPVANRLILSHKAILQAQKAEEREKLMDTLHEG-DIVEGKVARLTNFGAFVDLGGM- 222

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           DGLVH+SQ++ ERV K SDV+K G  V VK+L  D DR +I LS+K       
Sbjct: 223 DGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPW 275



 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    I +      + +G V +++DFGAFV      +GLVHISQ++ E +A   DV+K G
Sbjct: 273 EPWDGIEEKAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVG 332

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + + VK+LD D DR ++ LS+K +     +
Sbjct: 333 EKIKVKVLDVDPDRKRLALSIKALTDKPKE 362


>gi|227513320|ref|ZP_03943369.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
 gi|227524464|ref|ZP_03954513.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
 gi|227083193|gb|EEI18505.1| 30S ribosomal protein S1 [Lactobacillus buchneri ATCC 11577]
 gi|227088334|gb|EEI23646.1| 30S ribosomal protein S1 [Lactobacillus hilgardii ATCC 8290]
          Length = 413

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + ID     + ++  ++ + + A E  + +  + E   I +G+V ++ +FGAFV   G  
Sbjct: 165 IEIDPVANRLILSHKAILQAQKAEEREKLMDTLHEG-DIVEGKVARLTNFGAFVDLGGM- 222

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           DGLVH+SQ++ ERV K SDV+K G  V VK+L  D DR +I LS+K       
Sbjct: 223 DGLVHVSQIAYERVEKPSDVLKVGQEVKVKVLSVDFDRNRISLSIKQTLPEPW 275



 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    I +      + +G V +++DFGAFV      +GLVHISQ++ E +A   DV+K G
Sbjct: 273 EPWDGIEEKAPAGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIATPGDVLKVG 332

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + + VK+LD D DR ++ LS+K +     +
Sbjct: 333 EKIKVKVLDVDPDRKRLALSIKALTDKPKE 362


>gi|255021289|ref|ZP_05293338.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
 gi|254969300|gb|EET26813.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
          Length = 573

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +  +      G T +  +      +   +  A ++       +  ++    + S   +
Sbjct: 77  VEVCLESVEDGMGETKLSREKARRAKTWEDLEKAFEEGAVVHGFLTGKVKGGFTVSIDGV 136

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+V  + GK +   + +   K N      V ++  ++ E E +
Sbjct: 137 RAFLPGSL---VDVRPVRDVAYLEGKDLEMKIIKLDRKRN-----NVVVSRRAVVEQEQS 188

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E   I +G V  + D+GAF+   G  DGL+HI+ +   RV   S+VV  
Sbjct: 189 AERGALLESIQEGA-ILEGVVKNLTDYGAFIDL-GGIDGLLHITDMGWRRVKHPSEVVSA 246

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V V +L FD +RG+I L MK + ++  + I
Sbjct: 247 GDEVRVMVLKFDRERGRISLGMKQLGEDPWQDI 279



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  +I+ G+V  + D+GAFV      +GLVH+S++    +    +  +  G  V V +L
Sbjct: 284 PEGTRIF-GKVTNITDYGAFVEIEEGVEGLVHVSEIDWTNKNLNPAKALHLGQEVEVMVL 342

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
           D D+ R +I L +K    N  + 
Sbjct: 343 DIDEERRRISLGIKQCLPNPWEE 365



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++                           +      GQ+  + DFG F+   G  D
Sbjct: 342 LDIDEERRRISLGIKQCLPN----PWEEFAQNYQKGDRVSGQIKSITDFGVFIGLEGGID 397

Query: 645 GLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GL+H+S LS +R       D  K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 398 GLIHLSDLSWDRPGEEAVRD-FKKGDELEAVVLSIDPERERISLGIKQMETDP 449


>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Pichia angusta DL-1]
          Length = 246

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 10/230 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    Q+        GSS   +G+++ + +V           
Sbjct: 5   ELYSPEGLRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLA 64

Query: 364 DSLSGTQRNDFM-MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
                      + ++ N+ P A+ E  +     RR      + +R     +         
Sbjct: 65  AGTKLDPNGPVLSLNINYPPFASNERKKRPKNDRRLQEISIILKRCFMKTIVLKNYSRTA 124

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I   +   DG          +LAL+DAG+ +   V+ +++GL     D   L D++  
Sbjct: 125 IDINLTVLAMDGGLLACFCNAITLALIDAGISLYDYVSAVSVGLY----DQTPLLDMNAL 180

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +E+ L  +   V G       + + +    +  + +   +     G   +
Sbjct: 181 EENDLSFITIGVVGDSDK---LNLTLCEDKLPLDKLERLISLGIEGCHRL 227



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 29/214 (13%)

Query: 27  SDGAVLATYGETVVLATV----------VYDRSLKDGQDFFPLTVNYQERTYAVGKIPGG 76
           +DG+     G + VL  V               L        L +NY             
Sbjct: 36  ADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDPNGPVLSLNINYP-------PFASN 88

Query: 77  YLRRESRPTENEILISRMIDRS-IRPLFSKCY-KNETQVIINVMQHDLESSPHVVSMVAA 134
             ++  +       IS ++ R  ++ +  K Y +    + + V+  D           A 
Sbjct: 89  ERKKRPKNDRRLQEISIILKRCFMKTIVLKNYSRTAIDINLTVLAMDGGLLACF--CNAI 146

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLF---VSGTQDAVLMVELE 191
           + AL+ +G+     V    V   +   +L+     ++  L      V G  D + +   E
Sbjct: 147 TLALIDAGISLYDYVSAVSVGLYDQTPLLD-MNALEENDLSFITIGVVGDSDKLNLTLCE 205

Query: 192 ANQLSEDVVLDAIIFGHNEC---KPVIEAISKLA 222
              L  D +   I  G   C   K +++   ++A
Sbjct: 206 DK-LPLDKLERLISLGIEGCHRLKELMDLQVRIA 238


>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 242

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 93/241 (38%), Gaps = 9/241 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++     +  GSS   +G+T+ I +V  G  E E   
Sbjct: 5   ELYSPEGLRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVE-GPSEPE--T 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S     R    ++      +T E  +     +R I       R     +         +
Sbjct: 62  RSQVDVSRATIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS-GD 482
           ++   +   DG      +  ++LAL+DAG+ +   VA +A GL  +      L D++  +
Sbjct: 122 KVNLHVLAQDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETP----LLDLNTLE 177

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           E+ + H+   V G    +  + ++ K+       ++            ++++ ++   E 
Sbjct: 178 ENDMSHLTLGVIGKSEKLAVLMLEDKMPMDRLEPVLAIGIAGSHRIRELMDQETRRHGER 237

Query: 543 R 543
           R
Sbjct: 238 R 238



 Score = 43.7 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           S G+     G T V+  V      +             E   AV        ++  +  +
Sbjct: 36  STGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRAT-IEVNIAVASFSTIERKKRLKNEK 94

Query: 87  NEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
             I +   ++R+           +   +V ++V+  D      +  + A + AL+ +G+ 
Sbjct: 95  RIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQDGGMLATM--INATTLALIDAGIA 152

Query: 145 FEGPVVGAQVDYINGQYV--LNPRLDEDQGSLDLFVSGTQDAVLMVELEAN 193
               V        N   +  LN   + D   L L V G  + + ++ LE  
Sbjct: 153 MYDYVAAVAAGLHNETPLLDLNTLEENDMSHLTLGVIGKSEKLAVLMLEDK 203


>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
 gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
          Length = 401

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 12/137 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+ +G  V   +       + ID+D      S    E           T    
Sbjct: 233 HVDKPSDVLKVGQDVKVKV-------IGIDNDRNRISLSIKQTEPS----PFEQATANLH 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D
Sbjct: 282 DGDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNID 341

Query: 679 DR-GKIKLSMKVVDQNT 694
               +I LS+K  D N 
Sbjct: 342 PSDRRISLSIKAADSNA 358



 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
             K+   D    ++  S    IE  RE     +     V  + +G+V ++ +FGAF+   
Sbjct: 159 KLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV- 217

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + + 
Sbjct: 218 GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP 272


>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
           WM276]
 gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
           [Cryptococcus gattii WM276]
          Length = 262

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 6/241 (2%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D  +R D R    +R  S Q+     + GSS   +G T  +V V  G RE      
Sbjct: 7   EILNDGGLRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSV-FGPREPRNR-- 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
           SL+   R    +    +P A G  +R     +R    G   R+   PV+         + 
Sbjct: 64  SLASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIA 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++  +DG     ++  ++LAL+DAG+ +   V+ I++GL        +      +E 
Sbjct: 124 IHVQVLSADGGILPTSINATTLALIDAGISLLDYVSSISIGLHLLQPLLDL---SQPEES 180

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            L  +      +   IT  QM+ ++       M+    +A +     ++ + K  +E  +
Sbjct: 181 DLPSLVIASLPSSGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKDRTERIV 240

Query: 545 Q 545
           +
Sbjct: 241 E 241



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 16/206 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           SDG+  AT G T V+ +V   R  ++      D   ++V      +A G        R +
Sbjct: 37  SDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVVSVEVGVVPWAAG-----AGARRT 91

Query: 83  RPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R  +    I   I ++  P+       ++E  + + V+  D    P   S+ A + AL+ 
Sbjct: 92  RGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADGGILP--TSINATTLALID 149

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVLMVELEANQLSED 198
           +G+     V    +     Q +L+    E+     L ++   +   + + ++E  +L  D
Sbjct: 150 AGISLLDYVSSISIGLHLLQPLLDLSQPEESDLPSLVIASLPSSGKITLAQME-TRLHVD 208

Query: 199 VVLDAIIFGHNECKPVIEAISKLAKM 224
              + +  G   CK + E +  + K 
Sbjct: 209 RFEEMLTLGVEACKVLKEEMDGVVKD 234


>gi|71278192|ref|YP_269055.1| 30S ribosomal protein S1 [Colwellia psychrerythraea 34H]
 gi|71143932|gb|AAZ24405.1| ribosomal protein S1 [Colwellia psychrerythraea 34H]
          Length = 553

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++ +     I  ++    +    
Sbjct: 66  DEIDVALDATDDGFGETILSREKAKRHEAWQVLEKAYEEKETVIGVINGKVKGGFTVEVS 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 DIRAFLPGSL---VDVRPVRDTAHLEGKPLEFKVIKLDQKRN-----NVVVSRRAVIEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 GSAERDELLESLAEGQEV-KGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L MK + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGMKQLGEDPWVAIA 271



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIQEGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVLVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
           + D+ R +I L +K    N  + 
Sbjct: 334 EIDEERRRISLGLKQCIANPWEE 356



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A  +         +   I  G+V +V   GA +    + +G + +S +S ER+   S V
Sbjct: 434 QAEDDPFNMYLADKKKGAIVTGKVTEVDAKGATILLAESVEGYLRVSDISVERIEDASTV 493

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           +K GD V  + +  D + + I LS+K  DQ   + 
Sbjct: 494 LKVGDDVEARFMGVDRKNRTISLSIKAKDQADERE 528



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 15/138 (10%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      + ID++                           
Sbjct: 316 IHPSKVVNL----GDTVEVLV------LEIDEERRRISLGLKQCIAN----PWEEFAKNF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G++  + DFG F+   G  DGLVH+S +S     +     K+GD +   +L  
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWAGGEEAVRDYKKGDEIDAIVLQV 421

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R +I L +K  + + 
Sbjct: 422 DPERERISLGVKQAEDDP 439


>gi|222612339|gb|EEE50471.1| hypothetical protein OsJ_30517 [Oryza sativa Japonica Group]
          Length = 341

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 11/222 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +I   E  +  +         G T +  +     +  + +  AL++ +     I  ++  
Sbjct: 60  EIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKG 119

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +     +  F P   +   P      + G          E     + +D      + S
Sbjct: 120 GFTVDIKDVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVS 170

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                     E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV
Sbjct: 171 RRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRV 229

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
              S+VV  GD + V++L FD +R ++ L +K + ++    I
Sbjct: 230 RHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNI 271



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIGRRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325


>gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 691

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    VE     +NI DD  VKI   +  +   +        +     T+  EV  +  
Sbjct: 496 DIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNEHEVGDVIT 555

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV ++DFGAFV      +GL+H+S++S + V K SD +  GD V VK+L  D +  KI
Sbjct: 556 GKVVNLLDFGAFVEVSEGVEGLIHVSEISWDHVEKPSDELNVGDEVEVKILSIDPEEEKI 615

Query: 684 KLSMKVVDQNTGK 696
            LS+K + +   +
Sbjct: 616 GLSIKALKEAPER 628



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           D I+  D   +E      D    G +  +  +++D   G +S +   +   +  +     
Sbjct: 320 DGIVKLDEMTEEQRENPKDNFEIGQEVEVYVIKLDDGEGNVSLSTRRVEGMKNWKNLREA 379

Query: 532 LNEMSKVLSESR-LQLGEFTPRVEIM--AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
                 V  +      G  T RV  +   +P  QI           + + E    K+   
Sbjct: 380 YENDQTVEGDVTGANKGGLTARVMGINGFVPASQIAPY--FVKNFKKFVGEHWDLKIISI 437

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+   ++  S    +E   E +    D  E  ++  G+V ++ DFGAF+   G+ DGL+H
Sbjct: 438 DERKNRLVLSRKDIVE---EKLDEQWDELEEGQVITGKVARLTDFGAFIEI-GSLDGLLH 493

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S ++  RV    DV+  GD + VK+L  + ++ +I L  K + +  
Sbjct: 494 VSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKP 540



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             +  G ++ V D   FV      DG+V + +++ E+     D  + G  V V ++  DD
Sbjct: 296 RDVVNGTIIDVKDDEVFVDIQYRADGIVKLDEMTEEQRENPKDNFEIGQEVEVYVIKLDD 355

Query: 680 -RGKIKLSMKVVD 691
             G + LS + V+
Sbjct: 356 GEGNVSLSTRRVE 368


>gi|289622237|emb|CBI51415.1| unnamed protein product [Sordaria macrospora]
          Length = 273

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 11/234 (4%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL----GTREDEQYVDSLSG 368
           R+DGR    +R I AQ+       GSS    G T+ + VV      G R          G
Sbjct: 14  RVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGG 73

Query: 369 TQRNDFMMHYNF--LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            Q  +  +  N      ++ +  R G   +  +       +A+   L        T+ I 
Sbjct: 74  GQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINIS 133

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDIS-G 481
             +   DGS   A +  ++LA +DAG+P++  VA    G       + +    L D++  
Sbjct: 134 LHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNHQ 193

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +E  L  +     G    +  +  + ++       M+       +    IL+ +
Sbjct: 194 EEQELPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRV 247



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 23/220 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYAVGKIPGGY----L 78
           +DG+     G T V+  V         +             +    AV  +  G+     
Sbjct: 36  ADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGGGQSKNAEVAVNIVIAGFSSVDR 95

Query: 79  RRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           +R  R  ++ + +   I +++           +   + ++V+  D   S     + AA+ 
Sbjct: 96  KRRGRGDKHILELQSTISQALAASLHTHLFPHSTINISLHVLSQDG--SLLAALINAATL 153

Query: 137 ALMLSGLPFEGPVVGAQVD----YINGQYVLNPRLD---EDQGSLD-LFVS--GTQDAVL 186
           A + +G+P    V          Y       +P LD   +++  L  L V+  G  D V 
Sbjct: 154 ACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNHQEEQELPGLTVATLGDSDRVA 213

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++  E+  +    +   +  G + CK V E + ++ +   
Sbjct: 214 VLVCESR-VQVSRLEGMLAVGVDGCKQVREILDRVVREKG 252


>gi|32472024|ref|NP_865018.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|32397396|emb|CAD72702.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
          Length = 691

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 17/254 (6%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AL+D G      V     G  +D         +  +E      +   A    G+ ++   
Sbjct: 154 ALVDVGFKSEGTVGLDEWGPEEDQPKIGDTVKVLIEEMED---ELGAADDPYGMISLSKR 210

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
                I    M+  + + +     ++ ++   L      +  F P  ++    P  I + 
Sbjct: 211 KAEKIIEWEAMMETVAEGQVVTGTVIRKIKGGLLVDIG-VNVFLPGSQVDIRRPGDIGDF 269

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKG 625
           IG        +V+    K+   DD    I  S  + IE  RE  R+      EV +I KG
Sbjct: 270 IG-------RVVQAEVLKI---DDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKG 319

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + DFGAFV   G  DGL+HI+ ++ ER+   ++++     + VK+L  D ++ KI 
Sbjct: 320 IVKNIADFGAFVDL-GGIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIA 378

Query: 685 LSMKVVDQNTGKPI 698
           L +K  D+N  + I
Sbjct: 379 LGLKQKDRNPWENI 392



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 23/211 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   +    L+     R  +++  S +  +           +E+  I    ++N+   G 
Sbjct: 270 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 329

Query: 572 KV-------IRGIVEQTGAKV-------NIDDDGTVKIASSSLAEIEAA-------REMI 610
            V       +  I +    ++       +ID +  VK+      + + A       R   
Sbjct: 330 FVDLGGIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPW 389

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDT 669
            +I     V  ++ G+VV VM +GAFV      +GLVHIS++S  +RV   S++V  GD 
Sbjct: 390 ENIETKYPVESVHPGEVVNVMSYGAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDK 449

Query: 670 VWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
           + V +L  D  G ++ L MK   +N    ++
Sbjct: 450 IDVMILGVDPEGQQLSLGMKQTLKNPWDEVL 480



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 106/264 (40%), Gaps = 40/264 (15%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           V  I  G+VK+  DF    D+ G +   H+  M ++  G  + + ++  ++++  +  + 
Sbjct: 313 VGQIRKGIVKNIADFGAFVDLGGIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHID- 371

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV--------IG 568
                    R +  I   + +        +    P      + P ++ NV        + 
Sbjct: 372 ---------REKQKIALGLKQKDRNPWENIETKYPVES---VHPGEVVNVMSYGAFVKLE 419

Query: 569 MGGKVIRGIVEQTGAK--------VNIDDDGTVKIASSSLA-------EIEAAREMIRSI 613
            G + +  I E +  K        VNI D   V I               +  +     +
Sbjct: 420 PGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV 479

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWV 672
            +     K  KG+V  + ++GAF+      DGL+H+S +S  R +A  S+V+++G  +  
Sbjct: 480 LERYPEGKDVKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIEC 539

Query: 673 KLLDFDD-RGKIKLSMKVVDQNTG 695
           ++L  D+ R +I L +K +D +  
Sbjct: 540 RILSVDEQRRRIALGLKQLDNDPW 563



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ KG+V K+ +FG F+      +GL+HIS+L+  +V    +VVK GD + VK+L  
Sbjct: 572 QPGQLVKGEVTKITNFGVFIGLEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRV 631

Query: 678 D-DRGKIKLSMKVVD 691
           D D  KI LS+K VD
Sbjct: 632 DTDERKIGLSLKRVD 646


>gi|154496227|ref|ZP_02034923.1| hypothetical protein BACCAP_00512 [Bacteroides capillosus ATCC
           29799]
 gi|150274310|gb|EDN01387.1| hypothetical protein BACCAP_00512 [Bacteroides capillosus ATCC
           29799]
          Length = 150

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               V  I +G+V  +  FGAFV     + GLVHIS+++   V    D +KEG  V VK+
Sbjct: 1   MEFGVGSILEGKVTGLTKFGAFVSLPEGKSGLVHISEIAYSYVNDVKDYLKEGQEVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           +  D+ G+I LS+K       +P
Sbjct: 61  IGIDENGRINLSIKKAMDPPPRP 83


>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
 gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
          Length = 244

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 9/241 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQR-THGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++        GSS   +G+T+ + +V  G +E    +
Sbjct: 5   ELYSPEGLRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVH-GPKEPS--L 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S S   R    ++ N    +T E  +     +R +       R     +         +
Sbjct: 62  RSQSNQNRATIEINLNVASFSTLERKKRNRTEKRMVELKTTLERTFEQSILAHLYPRTLI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            +  ++   DG    +     +LAL+DAG+ +   V+ + + L     D   L D++  E
Sbjct: 122 EVHVQVLAQDGGMLASITNAITLALVDAGIAMYDYVSAVNVAL----HDQTPLLDLNTLE 177

Query: 484 DHLGH-MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ++    +   V G    +  + ++ K+       ++            +++E  +    S
Sbjct: 178 ENDMSCLTIGVVGKSEKLAMLLLEDKMPLDRLEAVLGIAIAGGHRIRDLMDEEVRRHGNS 237

Query: 543 R 543
           R
Sbjct: 238 R 238



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 10/192 (5%)

Query: 24  ARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           A  +DG+     G T V+  V   +                E    V        ++ +R
Sbjct: 33  ANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRAT-IEINLNVASFSTLERKKRNR 91

Query: 84  PTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             +  + +   ++R+           +   +V + V+  D      +    A + AL+ +
Sbjct: 92  TEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQVLAQDGGMLASIT--NAITLALVDA 149

Query: 142 GLPFEGPVVGAQVDYINGQYV--LNPRLDEDQGSLDLFVSGTQDAVLMVELEANQL---S 196
           G+     V    V   +   +  LN   + D   L + V G  + + M+ LE        
Sbjct: 150 GIAMYDYVSAVNVALHDQTPLLDLNTLEENDMSCLTIGVVGKSEKLAMLLLEDKMPLDRL 209

Query: 197 EDVVLDAIIFGH 208
           E V+  AI  GH
Sbjct: 210 EAVLGIAIAGGH 221


>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
 gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
          Length = 240

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 94/237 (39%), Gaps = 10/237 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++     +  GSS   +G+T+ +  V  G  E    +
Sbjct: 2   ELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQ-GPIEP--QL 58

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S   ++  +  ++      AT E  +     +R I    +  +     +         +
Sbjct: 59  RSQQHSEHANIEINLTIANFATFERKKRNKNEKRLIELKNILEKTFMESIMINLYPRTNI 118

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG-D 482
            I  ++   DG    A     +LAL+D+G+ +   V+ I  GL     D   L D++  +
Sbjct: 119 IINIQVLSQDGGLLSAITNSITLALIDSGISMYDYVSSINCGLY----DTTPLLDLNNLE 174

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEMSKV 538
           E+ + ++   V G    +  +  + K+       ++ +A+  + R R  +  E+ K 
Sbjct: 175 ENDISNLTIGVIGKSEKLALLLSEDKMPLDRLENVLSLAIAGSHRIRDLMDQEVRKH 231



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 10/189 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           SDG+     G T V+ TV      +          N  E    +        ++ ++  +
Sbjct: 33  SDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHAN-IEINLTIANFATFERKKRNKNEK 91

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIIN--VMQHDLESSPHVVSMVAASAALMLSGLP 144
             I +  +++++            T +IIN  V+  D      +    + + AL+ SG+ 
Sbjct: 92  RLIELKNILEKTFMESIMINLYPRTNIIINIQVLSQDGGLLSAIT--NSITLALIDSGIS 149

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVLMVELEANQL---SEDV 199
               V        +   +L+    E+    +L +   G  + + ++  E        E+V
Sbjct: 150 MYDYVSSINCGLYDTTPLLDLNNLEENDISNLTIGVIGKSEKLALLLSEDKMPLDRLENV 209

Query: 200 VLDAIIFGH 208
           +  AI   H
Sbjct: 210 LSLAIAGSH 218


>gi|114320092|ref|YP_741775.1| 30S ribosomal protein S1 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226486|gb|ABI56285.1| SSU ribosomal protein S1P [Alkalilimnicola ehrlichii MLHE-1]
          Length = 561

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 96/235 (40%), Gaps = 11/235 (4%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            ++     +    ++   E     +        SG T +  +      +   +  A +++
Sbjct: 46  AVIPASQFYDEEGNLEVAEGDEVEVSLDAVEDGSGETRLSREKAKRAYAWRFLEDAYEKS 105

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +  +  I  ++    +     +  F P      +    +R+   + G+ +   V +   +
Sbjct: 106 EAVKGQISGKVKGGFTVDLGHIRAFLPGSL---VDIRPVRDTTYLEGRDLEFKVIKLDPR 162

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            N   +  V   +    E  A RE +       +  ++ KG V  + D+GAFV   G  D
Sbjct: 163 RN---NVVVSRRAVVEEEYSAEREQLLE---KLQEGQVLKGIVKNLTDYGAFVDLGGM-D 215

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL+HI+ ++  RV   S+VV+ G  + VK+L FD +R ++ L +K +  +  + I
Sbjct: 216 GLLHITDMAWRRVKNPSEVVEVGQEIEVKVLKFDRERNRVSLGLKQLGADPWENI 270



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + ++GAFV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWENIGGRYPEGARVPGRVTNITEYGAFVEIEEGVEGLVHVSEMDWTNKNVNPAKMVSI 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +LD D +R +I L MK    N    
Sbjct: 325 GDEVEVMILDIDEERRRISLGMKQCLPNPWDE 356



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V   G  +G V  S +S +RV     V+KEG+ +  K +  D R 
Sbjct: 453 LVKGTVKDVEAKGATVTLEGGMEGYVRASDISRDRVEDARTVLKEGEEIEAKFVGVDRRN 512

Query: 682 KI-KLSMKVVDQNTGKPIV 699
           ++  LS+K  DQ   + +V
Sbjct: 513 RMANLSIKAKDQVEEQRLV 531



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 38/256 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S +  +  ++++  +  +       
Sbjct: 197 GIVKNLTDYGAFVDLGGMDGLLHITDMAWRRVKNPSEVVEVGQEIEVKVLKFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM-----AIPPDQIRNVIGMGGKVIRGI 577
              R R  +   + ++ ++    +G   P    +      I        I  G + +  +
Sbjct: 250 ---RERNRVSLGLKQLGADPWENIGGRYPEGARVPGRVTNITEYGAFVEIEEGVEGLVHV 306

Query: 578 VEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREM-------IRSITDVPEVNKI 622
            E             V+I D+  V I          +  M               +    
Sbjct: 307 SEMDWTNKNVNPAKMVSIGDEVEVMILDIDEERRRISLGMKQCLPNPWDEFAATHQKGDR 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
             GQ+  + DFG FV   G  DGLVH+S LS        + V   ++G+ V   +L  D 
Sbjct: 367 VTGQIKSITDFGIFVGLDGGIDGLVHLSDLSWGEAG--EEAVRNYRKGEEVEAVVLSVDP 424

Query: 679 DRGKIKLSMKVVDQNT 694
           +R +I L +K ++Q+ 
Sbjct: 425 ERERISLGIKQLEQDP 440


>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
 gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
          Length = 261

 Score =  101 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 8/250 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + +R+DGR  +  R +  ++  L  + GS++F  G+T+ +  V  G  E  +  + L   
Sbjct: 7   EGLRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVH-GPHECRRPSERL--E 63

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
            R       +    +TGE  R     RR        RR I   +         L +  ++
Sbjct: 64  DRLLVKCEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCVSAELLARSQLDVSIQV 123

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            ++DG    A V  + LA++DAG+P+   +A  + G + D      L D++  E+  G  
Sbjct: 124 LQADGGVRAAAVNAAVLAIVDAGIPMQDTMACCSAGYLDDTP----LLDLNYMEEGGGGP 179

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           +  VA     +  +   +     S ++   A + A  G       M + + E    L   
Sbjct: 180 EVHVAYMPQ-MDRVVAIVTENKASVDVFERAHELALDGCRVASKLMRERMIEHAKHLWAM 238

Query: 550 TPRVEIMAIP 559
                 +   
Sbjct: 239 RQVTLRVKDD 248



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRES 82
           SDG+ +   G T VLA V      +       D   +        ++ G+          
Sbjct: 32  SDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLVKCEVSMAAFSTGERRRRTKGDRR 91

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E    + R I+  +        + +  +   V+Q D       V+    +   + +G
Sbjct: 92  T-NELSTFVRRCIETCVSAELLARSQLDVSI--QVLQADGGVRAAAVNAAVLAI--VDAG 146

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLSEDV 199
           +P +  +      Y++   +L+    E+ G    + +      D V+ +  E N+ S DV
Sbjct: 147 IPMQDTMACCSAGYLDDTPLLDLNYMEEGGGGPEVHVAYMPQMDRVVAIVTE-NKASVDV 205

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAK 227
              A     + C+   + + +     AK
Sbjct: 206 FERAHELALDGCRVASKLMRERMIEHAK 233


>gi|111220956|ref|YP_711750.1| ribonuclease PH [Frankia alni ACN14a]
 gi|111148488|emb|CAJ60159.1| ribonuclease PH [Frankia alni ACN14a]
          Length = 204

 Score =  101 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 9/189 (4%)

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEV----SRMGAPSRREIGHGRLARRAIHPVLPQTA 417
                 G+        Y+ LP AT       S  G    R     RL  R++   +   A
Sbjct: 5   VPRWRKGSGLGWVTAEYSMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRACIDLAA 64

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM---GLVKDGDDFI 474
               T+ I  ++  +DG +  A + G+ +AL+DA   + +P A I      +        
Sbjct: 65  LGENTIAIDCDVLLADGGTRTAAITGAYVALVDAARWLGRP-AAITTSVAAVSVGVVRGE 123

Query: 475 ILSDISGDEDHLGHMDFKVAGTD-SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            + D++  ED     D  V  T   G   +Q   +       ++   L  A  G   +  
Sbjct: 124 PMLDLAYTEDSTADTDMNVVCTGADGFVEVQGTAEGVPFDRAMLDNLLDLAVFGCAQLAE 183

Query: 534 EMSKVLSES 542
             ++ L   
Sbjct: 184 IQAEALQGP 192


>gi|285018380|ref|YP_003376091.1| 30s ribosomal protein s1 [Xanthomonas albilineans GPE PC73]
 gi|283473598|emb|CBA16101.1| 30s ribosomal protein s1 [Xanthomonas albilineans]
          Length = 559

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 11/223 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +I   E  L  +         G T +  D     +  + +  AL++ +     I  ++  
Sbjct: 60  EIDVAEGDLVKVVLDSLENGFGETVLSRDKARRAMVWDELEEALEKNETIVGRISGKVKG 119

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +     +  F P           + +V  +         E     + +D      + S
Sbjct: 120 GFTVDIKDVRAFLP---------GSLVDVRPVRDPSCLDGKELEFKLIKLDRKRNNVVVS 170

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                     E    + D      I KG V  + D+GAFV   G  DGL+HI+ ++ +RV
Sbjct: 171 RRAVVESEHSEEREQLMDKLNEGTILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRV 229

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
              S+VV  GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 230 RHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 38/256 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +       
Sbjct: 198 GVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD------- 250

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +    +    P    +      + +      I  G + +  +
Sbjct: 251 ---RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHV 307

Query: 578 VEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKI 622
            E      N++        D+  V +               + A     +     + N  
Sbjct: 308 SEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDK 367

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
             GQ+  + DFG F+   G  DGLVH+S +S        D+V   K+GDT+   +L  D 
Sbjct: 368 VSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDIVRNFKKGDTLEAVVLAVDP 425

Query: 679 DRGKIKLSMKVVDQNT 694
           +R +I L +K ++Q+ 
Sbjct: 426 ERERISLGVKQLEQDP 441



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   S  +K GD +
Sbjct: 444 QYMAANPKGSKV-EGVVREVDAKGATIDLADGIEGYVAARDIANERVDDASQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             K +  D +G+ ++LS+K  D    + ++
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKDDAEMREVL 532


>gi|6175044|sp|P50889|RS1_LEULA RecName: Full=40S ribosomal protein S1
 gi|1565296|gb|AAB08978.1| ribosomal protein S1 homolog; sequence specific DNA-binding protein
           [Leuconostoc lactis]
          Length = 429

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D    +I+ S  A     R       D      + +G V +V DFGAFV 
Sbjct: 278 DKVDVKILALDTEKGRISLSIKAT---QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 334

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GD V VK+LD      +I LSMK +++   + 
Sbjct: 335 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERE 394



 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +  +     V ++ +G V ++ DFGAFV   G  D
Sbjct: 196 IEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDL-GGVD 254

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +RV   +DV+ +GD V VK+L  D ++G+I LS+K   +     
Sbjct: 255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDE 308



 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV-MDFGAFVHFCGARDGLVHISQ 651
            +               + S  D  +V  +  G+++ +  D  A V      +G+V   +
Sbjct: 28  RRTLDVMSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPARE 87

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLD---FDDRGKIK--LSMKVVD 691
            S +R    +D +K GDT+   ++     D  G +   LS K +D
Sbjct: 88  YSDDRNINLADELKIGDTIEAVVISNVTSDKEG-VAYLLSKKRLD 131


>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 274

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 19/244 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQ--RTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           R DGR    +R +  Q+  L      GS+L   G T  ++    G  +  +  D      
Sbjct: 17  RNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLT-VVLATVRGPVDCLRRAD--ENPD 73

Query: 371 RNDFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           +    +     P ++    R+      RR I    + +RA+   +         + +V  
Sbjct: 74  QAVLDVTVQSAPFSSSADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL----VKDGDDFIILSDISGDE- 483
           +   DG    A +  ++LALMDAG+P+   V   + GL           + L D++  E 
Sbjct: 134 VLADDGGRLCAAINAATLALMDAGIPMKDFVCACSAGLPGTSATPDSHALTLVDLNRQEE 193

Query: 484 -----DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                    HM   +    + +   Q + ++  +  + +   L  A  G   + + +   
Sbjct: 194 SSTGGQAATHMPVALLPQRNTLVLAQCEARLPNL--DTLERVLDAATEGCRAVFDILQAA 251

Query: 539 LSES 542
           + E 
Sbjct: 252 VREH 255



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 30/222 (13%)

Query: 28  DGAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR--E 81
            G+ L   G TVVLATV       R   +  D   L V  Q   ++         RR   
Sbjct: 42  SGSALVEMGLTVVLATVRGPVDCLRRADENPDQAVLDVTVQSAPFS-----SSADRRVAN 96

Query: 82  SRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            +     I  S M+ R++    L     K+  +++++V+  D        ++ AA+ ALM
Sbjct: 97  PKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVSVLADDGGRL--CAAINAATLALM 154

Query: 140 LSGLPFEGPVVGAQVDYINGQ--------YVLNPRLDEDQGS-------LDLFVSGTQDA 184
            +G+P +  V                    +++    E+  +       + + +   ++ 
Sbjct: 155 DAGIPMKDFVCACSAGLPGTSATPDSHALTLVDLNRQEESSTGGQAATHMPVALLPQRNT 214

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           +++ + EA   + D +   +      C+ V + +    +  A
Sbjct: 215 LVLAQCEARLPNLDTLERVLDAATEGCRAVFDILQAAVREHA 256


>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
 gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii]
          Length = 245

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 94/237 (39%), Gaps = 10/237 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R    ++     +  GSS   +G+T+ I +V       E  +
Sbjct: 5   ELYSPEGLRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMV---QGPMEPSL 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            S + + +    ++ +    +T E  +     +R I       R     +         +
Sbjct: 62  RSQTNSSKASIEINLSVANFSTIERKKRLKNEKRLIELKTTLERTFEQSVICKLYPRTVI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           +I   +   DG          +LAL+DAG+ +   V+ I  GL     D   L D++  E
Sbjct: 122 QINLHVLCQDGGLLAGMTNAITLALIDAGIAMYDYVSAINAGLY----DQTPLLDLNTLE 177

Query: 484 DHLGH-MDFKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKV 538
           ++    +   V G    +  + ++ K+   + E+++ + +    R R  + NE+ K 
Sbjct: 178 ENDMSCLTIGVVGKSEKLALLLLEDKMPLDMLESVLAIGIAGGHRVRDLMDNEVRKH 234



 Score = 39.1 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           SDG+     G T ++  V                 +  E   +V        ++  +  +
Sbjct: 36  SDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKAS-IEINLSVANFSTIERKKRLKNEK 94

Query: 87  NEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
             I +   ++R+           +   Q+ ++V+  D      +    A + AL+ +G+ 
Sbjct: 95  RLIELKTTLERTFEQSVICKLYPRTVIQINLHVLCQDGGLLAGMT--NAITLALIDAGIA 152

Query: 145 FEGPVVGAQVDYINGQYV--LNPRLDEDQGSLDLFVSGTQDAVLMVELEAN---QLSEDV 199
               V        +   +  LN   + D   L + V G  + + ++ LE      + E V
Sbjct: 153 MYDYVSAINAGLYDQTPLLDLNTLEENDMSCLTIGVVGKSEKLALLLLEDKMPLDMLESV 212

Query: 200 VLDAIIFGH 208
           +   I  GH
Sbjct: 213 LAIGIAGGH 221


>gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
          Length = 403

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G  V   +       + ID+D      S    E           T    
Sbjct: 233 HVDKPSDVLKAGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATADLN 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D
Sbjct: 282 EGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNID 341

Query: 679 DR-GKIKLSMKVVDQNT 694
               +I LS+K  D N 
Sbjct: 342 PSDRRISLSIKAADSNA 358



 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    +E  RE     +     V  + +G+V ++ +FG
Sbjct: 153 YIGKTMKLKITEIDPNKNRLILSHKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            F+   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 213 GFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|21672576|ref|NP_660643.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|2500382|sp|Q44653|RS1_BUCAP RecName: Full=30S ribosomal protein S1
 gi|1448954|gb|AAC05429.1| ribosomal protein S1 [Buchnera aphidicola]
 gi|21623204|gb|AAM67854.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 559

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 11/181 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  A ++++     I  ++    +    ++  F P      +    +R+ I + GK + 
Sbjct: 97  ILEQAHEKSETVIGIINGKVKGGFTVELNEIRAFLPGSL---VDVRPVRDTIHLEGKELE 153

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             V +   K N      V ++  ++ E E + E  + +  + E  +I KG V  + D+GA
Sbjct: 154 FKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLESLQEGIEI-KGIVKNLTDYGA 207

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R ++ L +K + ++ 
Sbjct: 208 FVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++    +    S VV   + V V +L
Sbjct: 275 PEGIKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVAVNNIVDVIVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           D D +R +I L +K    N  + 
Sbjct: 334 DIDEERRRISLGLKQCKINPWQE 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 137/359 (38%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +     R+  H  L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNEIRAFLPGSLVDVRPV-----RDTIH--LEGKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ I         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSAERDQL----LESLQEGIEIK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  I+    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKILKFDKERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +S    +  + + RV  +      +    G+ G V    ++ T   +          
Sbjct: 267 WIAISNRYPEGIKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVAVNN 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +I       +  ++  +      G++  + DFG F+ 
Sbjct: 327 IVDVIVLDIDEERRRISLGLKQCKIN----PWQEFSETHKKGIHVSGKIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S + ++    V   K+GD +   +L  D +R +I L +K ++++ 
Sbjct: 383 LKGGIDGLVHLSDISWK-ISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEEDP 440


>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
          Length = 257

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGRD +  R    + G +    GS+    G+T+ IV V  G RE ++   ++  +   
Sbjct: 35  RPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSV-FGPRESKK---AMVYSDVG 90

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
               + +    AT     +G+ ++       +  +A+   +        T+ + + + ES
Sbjct: 91  RLNCNVSCTTFATPARG-LGSDNK---EFSSMLHKALEGAIMLETFPKTTVDVFALVLES 146

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  +SLAL DAG+ +   VAG+++  +       ++ D   +E+        
Sbjct: 147 GGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRN----LIIDPILEEESFQDGSLM 202

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +    S     Q+ +  G  S   +  A+Q        +   M   L E+
Sbjct: 203 ITCMPSRYEVTQLSIT-GEWSTAKLNEAMQLCLDACSKLDKIMRACLKEA 251



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 23/222 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAV 70
           RP    TG +   + G+  A +G T V+ +V   R  K      D   L  N    T+A 
Sbjct: 45  RPAFFRTGAV-NSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFAT 103

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
             +  G   +      E   ++ + ++ +I  +     K    V   V++      P V+
Sbjct: 104 PARGLGSDNK------EFSSMLHKALEGAI--MLETFPKTTVDVFALVLESGGSDLPVVI 155

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           S   AS AL  +G+     V G  V  +    +++P L+E+    GSL +    ++  V 
Sbjct: 156 SC--ASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCMPSRYEVT 213

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + +   + S   + +A+    + C  +     K+ + C KE
Sbjct: 214 QLSITG-EWSTAKLNEAMQLCLDACSKL----DKIMRACLKE 250


>gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 687

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    VE     +N+ D+  VKI   +  +   +        +   +  +  EV  +  
Sbjct: 496 DIAWSRVEHPSDVLNVGDEVEVKILKLNKEKNRISLGRKQLLEKPFEAFANQHEVGDVVT 555

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV ++DFGAFV      +GLVH+S++S E V K SD +  GD + VK++  D +  K+
Sbjct: 556 GKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISLDKEEEKV 615

Query: 684 KLSMKVVDQNTGKP 697
            LS+K + +   +P
Sbjct: 616 GLSIKALKEAPERP 629



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           + + E    K+   D+   ++  S    +E     +  + D  E  ++  G+V ++ DFG
Sbjct: 424 KFVGEDWDLKIVSIDERKNRLVLSRKDVVE---GQLDELWDELEEGQVVTGKVARLTDFG 480

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV      DGL+H+S ++  RV   SDV+  GD V VK+L  + ++ +I L  K + + 
Sbjct: 481 AFVEV-NGLDGLLHVSDIAWSRVEHPSDVLNVGDEVEVKILKLNKEKNRISLGRKQLLEK 539

Query: 694 T 694
            
Sbjct: 540 P 540



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 4/180 (2%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           +EN    A   AK     I+       + ++L          +  I   +   +  +   
Sbjct: 192 TENRQQAAKSLAKEVDCMIVAGGFNSSNTNKLYQVASMYCKHVFRIETVKDLPLQKLSKF 251

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
              GI+        I ++    +   +  E   + E         E   I KG V+ V D
Sbjct: 252 KKVGIIAGASTPDEIIEEVVSSMDEFTKEEFMNSLEDSLKKVYPKE---IVKGTVIDVKD 308

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              FV      DG++ + +++ E           GD + V ++  DD  G + LS + V+
Sbjct: 309 DEIFVDIQFRADGIIKLDEMTEEERKDPKSSFNIGDEIDVYVIKLDDGEGNVALSTRRVE 368


>gi|156836886|ref|XP_001642483.1| hypothetical protein Kpol_322p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113018|gb|EDO14625.1| hypothetical protein Kpol_322p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1143

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR--- 643
           + +D    +      E   +      + + P VNKIYKG+V  +  FG FV   G +   
Sbjct: 154 VHNDRFEYMNIQRKDEFPESITSNPFLDESPIVNKIYKGKVRSITSFGCFVQILGTKKIN 213

Query: 644 -DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            DGLVHISQLS   +    +++     V++K++     GKI LSMK VDQ TG+ +
Sbjct: 214 CDGLVHISQLSQHHINDPYEIISVNQIVYIKVIKVQRNGKISLSMKEVDQKTGRDL 269


>gi|254524507|ref|ZP_05136562.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
 gi|219722098|gb|EED40623.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
          Length = 561

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 11/222 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +I   E  +  +         G T +  +     +  + +  AL++ +     I  ++  
Sbjct: 60  EIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKG 119

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +     +  F P   +   P      + G          E     + +D      + S
Sbjct: 120 GFTVDIKDVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVS 170

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                     E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV
Sbjct: 171 RRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRV 229

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
              S+VV  GD + V++L FD +R ++ L +K + ++    I
Sbjct: 230 RHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNI 271



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIGRRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +G   P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIGRRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KGDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNFKKGDTLDAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD V
Sbjct: 444 QYMAANPKGSKV-EGVVKEVDAKGAIIELADGIEGYVSARDIANERVDDATQHLKVGDKV 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             K +  D +G+ ++LS+K  D    + ++
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKDDAEMREVL 532


>gi|190574008|ref|YP_001971853.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia K279a]
 gi|190011930|emb|CAQ45551.1| putative 30S ribosomal protein S1 [Stenotrophomonas maltophilia
           K279a]
          Length = 561

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 11/222 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +I   E  +  +         G T +  +     +  + +  AL++ +     I  ++  
Sbjct: 60  EIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKG 119

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +     +  F P   +   P      + G          E     + +D      + S
Sbjct: 120 GFTVDIKDVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVS 170

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                     E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV
Sbjct: 171 RRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRV 229

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
              S+VV  GD + V++L FD +R ++ L +K + ++    I
Sbjct: 230 RHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNI 271



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIGRRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +G   P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIGRRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KGDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNFKKGDTLDAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 444 QYMAANPKGSKV-EGVVKEVDAKGAIIELADGIEGYVSARDIANERVDDATQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             K +  D +G+ ++LS+K  D    + ++
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKDDAEMREVL 532


>gi|331701405|ref|YP_004398364.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128748|gb|AEB73301.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929]
          Length = 416

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + ID  +  + ++  ++ + E A E  + +  + E   + +G V ++ +FGAFV   G  
Sbjct: 165 IEIDPVENRLILSHKAIVQAEKAEEREKLMQTLHEG-DVVEGTVARLTNFGAFVDLGGM- 222

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           DGLVH+SQ++ ERV K SDV+K G TV VK+L  D DR +I LS+K       
Sbjct: 223 DGLVHVSQIAYERVDKPSDVLKVGQTVKVKVLSVDFDRNRISLSIKQTLPEPW 275



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    I +   V  + +G V +++DFGAFV      +GLVHISQ++ E +   +DV+K G
Sbjct: 273 EPWDGIEEKAPVGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHEHIDTPADVLKVG 332

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           + + VK+LD D DR ++ LS+K +     + 
Sbjct: 333 EKIKVKVLDVDTDRKRLALSIKALTDAPEEE 363


>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
          Length = 260

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 17/233 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR     R    Q G      GS+    G T+ IV V  G RE ++   ++  +  
Sbjct: 38  PRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSV-FGPRESKK---AMLYSDT 93

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                + ++   AT    +          +  +  +A+   +        T+ + + + E
Sbjct: 94  GRLNCNVSYTTFATPMRGQGTDNK----EYSAMLHKALEGAVMLHTFPKTTVDVFALVLE 149

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S GS     +  +SLAL DAG+ +   V  +++          I+ D + DE+       
Sbjct: 150 SGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKN----IIIDPTSDEEAWQDGSL 205

Query: 492 KVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            VA       IT +      G  S+  +  A++        + + + + L ++
Sbjct: 206 MVAYMPARKEITQL---TLTGEWSDGKITNAVELCMDACSKLCDILREHLKDA 255



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 16/205 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G+T V+ +V   R  K      D   L  N    T+A      G   +E  
Sbjct: 61  ASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPMRGQGTDNKE-- 118

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P ++S   AS AL  +G+
Sbjct: 119 ---YSAMLHKALEGAV--MLHTFPKTTVDVFALVLESGGSDLPIIISC--ASLALADAGI 171

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V    V       +++P  DE+    GSL +         +       + S+  +
Sbjct: 172 MMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSL-MVAYMPARKEITQLTLTGEWSDGKI 230

Query: 201 LDAIIFGHNECKPVIEAISKLAKMC 225
            +A+    + C  + + + +  K  
Sbjct: 231 TNAVELCMDACSKLCDILREHLKDA 255


>gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229552180|ref|ZP_04440905.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|258508384|ref|YP_003171135.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|258539595|ref|YP_003174094.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus Lc 705]
 gi|199590391|gb|EDY98483.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229314482|gb|EEN80455.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|257148311|emb|CAR87284.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus GG]
 gi|257151271|emb|CAR90243.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus Lc 705]
 gi|259649698|dbj|BAI41860.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
          Length = 436

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + I+  +  + ++  ++ E   A         +     + +G+V ++ +FGAFV   G  
Sbjct: 168 IEIEPSENRLILSHRAIVEASKAEARKEIFAKIQPG-DVVEGKVARLTNFGAFVDL-GGV 225

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           DGLVH+S++S + V K SDV+K G  + VK+L+ D DR +I LS+K         I
Sbjct: 226 DGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDI 281



 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH--MDFKVAGTDSGITAMQ 504
           A  +AG  I+ PV  +  G +            S  EDH       +K    +  I  ++
Sbjct: 112 AKYEAGETITAPVTSVVKGGLVVNAGVRGFVPASMVEDHFVEDLNQYKGKELEFKIIEIE 171

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP----- 559
                  +S   +V A +   R  +    +   V+     +L  F   V++  +      
Sbjct: 172 PSENRLILSHRAIVEASKAEARKEIFAKIQPGDVVEGKVARLTNFGAFVDLGGVDGLVHV 231

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +   + +     V++   E     +N+D D   +I+ S  A +    + I         
Sbjct: 232 SEISFDHVDKPSDVLKVGQEIKVKVLNVDPD-RNRISLSIKATLPQPWDDIEEKAP---A 287

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             +  G V ++  FGAFV      +GLVHISQ+S E VA  +DV+KEG  V VK+L  D 
Sbjct: 288 GSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDP 347

Query: 679 DRGKIKLSMKVVDQNTG 695
           D  ++ LS+K +     
Sbjct: 348 DAHRLALSIKALQDRPA 364



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLS 653
           ++ +++ E               ++    K  V+ V D    V   G   +G+V I +LS
Sbjct: 1   MSDNNVNENTETMADALKSVTTVKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELS 60

Query: 654 TERVAKTSDVVKEGDTVWVKLLDF----DDRGKIKLSMKVVD-QNTGKPI 698
           T+ +    DV K GD + + +L       + G+  LS + ++ Q   K I
Sbjct: 61  TQPIDDIHDVAKVGDKLDLVVLSTVGKDKENGQFLLSKRRLEAQKVWKEI 110


>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 401

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    IE  RE    ++     V  + +G+V ++ DFG
Sbjct: 152 YIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFG 211

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 212 SFVDI-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 270

Query: 694 T 694
            
Sbjct: 271 P 271



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+ +G  V   +       + ID+D      S    E           T    
Sbjct: 232 HVDKPSDVLKVGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATSSLN 280

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + +G+V  + +FGAFV       GLVH+S+++ + V K SDV+K G  V VK+L+ D
Sbjct: 281 EGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNID 340

Query: 679 D-RGKIKLSMKVVDQNTG 695
             + +I LS+K VD    
Sbjct: 341 PSKRRISLSIKQVDPENA 358


>gi|194365424|ref|YP_002028034.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
 gi|194348228|gb|ACF51351.1| ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
          Length = 561

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 11/223 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +I   E  +  +         G T +  +     +  + +  AL++ +     I  ++  
Sbjct: 60  EIDVAEGDIVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKG 119

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +     +  F P   +   P      + G          E     + +D      + S
Sbjct: 120 GFTVDIKDVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVS 170

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                     E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV
Sbjct: 171 RRAVVESEHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRV 229

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
              S+VV  GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 230 RHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +    P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 GQ+  + DFG F+   G  DGLVH+S +S        D+V   K+GDT+   +L
Sbjct: 364 KGDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWATTG--EDIVRNFKKGDTLDAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD V
Sbjct: 444 QYMAANPKGSKV-EGVVKEVDAKGAIIELADGIEGYVSARDIANERVDDATQHLKVGDKV 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             K +  D +G+ ++LS+K  D    + ++
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKDDAEMREVL 532


>gi|254490959|ref|ZP_05104141.1| ribosomal protein S1 [Methylophaga thiooxidans DMS010]
 gi|224463868|gb|EEF80135.1| ribosomal protein S1 [Methylophaga thiooxydans DMS010]
          Length = 530

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            L  +  +      G T +  D      +   +  A +        I  ++    +    
Sbjct: 66  DLVDVSLESLEDGFGATQLSRDKAKAAEAWTKLEHAFEAGDTVTGMISGKVKGGFTVDLE 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P     ++ G   +     +++    +       V   +    E  
Sbjct: 126 NIRAFLPGSLVDVRPIRDTSHLEGKDLEFKLIKLDRPRNNI------VVSRRAIMEEENS 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A RE +       E  K+ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 180 AEREALLE---TLEEGKVVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEVV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K +  +  K I 
Sbjct: 236 AIGDEIEVQVLKFDKERERVSLGLKQMGDDPWKDIA 271



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 17/188 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------KVIRGIV 578
            R  I+ E +    E+ L+  E    V+ +          + +GG         +    V
Sbjct: 169 SRRAIMEEENSAEREALLETLEEGKVVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKRV 228

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +     V I D+  V++               +   +  + I      +    G+V  + 
Sbjct: 229 KHPSEVVAIGDEIEVQVLKFDKERERVSLGLKQMGDDPWKDIARRYPNSTRIHGKVTNIA 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH+S++    +    S +V  GD V V +LD D +R +I L +K 
Sbjct: 289 DYGCFVEIEDGVEGLVHMSEMDWTNKNVHPSKLVSLGDEVEVMVLDIDAERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 CQANPWEE 356



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S + A+  ++++  +  +       
Sbjct: 197 GIVKNLTDYGAFVDLGGIDGLLHITDMAWKRVKHPSEVVAIGDEIEVQVLKFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              + R  +   + ++  +    +    P    +      I +      I  G + +  +
Sbjct: 250 ---KERERVSLGLKQMGDDPWKDIARRYPNSTRIHGKVTNIADYGCFVEIEDGVEGLVHM 306

Query: 578 VEQTGAK--------VNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKI 622
            E             V++ D+  V +               +                  
Sbjct: 307 SEMDWTNKNVHPSKLVSLGDEVEVMVLDIDAERRRISLGIKQCQANPWEEFAMTHNKGDK 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK--TSDVVKEGDTVWVKLLDFD-D 679
             G +  + DFG F+   G  DGL+H+S +S E   +    D  K+GD V   +L  D +
Sbjct: 367 VSGGIKSITDFGIFIGLDGGIDGLIHLSDISWEEDNEELIRD-FKKGDDVEAVVLAIDPE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K +  + 
Sbjct: 426 RERISLGIKQLQDDP 440



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I  G+V  V   GA +      +  V ++ ++ ERV   S V+  GD V  K      +
Sbjct: 452 TIVNGKVTAVDARGATIELAEGVESYVRVADIARERVEDASKVLAIGDDVEAKFTGMSRK 511

Query: 681 GK-IKLSMKV-VDQNTGK 696
            + + LS+K   DQ   K
Sbjct: 512 DRTLTLSIKAKDDQENPK 529


>gi|52425531|ref|YP_088668.1| 30S ribosomal protein S1 [Mannheimia succiniciproducens MBEL55E]
 gi|52307583|gb|AAU38083.1| RpsA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 549

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 25/263 (9%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
            G  +S  V  I  G V         S I  +E      + +V   D  +  + +D    
Sbjct: 20  QGSIVSGTVVAIQKGFVLVDAGLKSESAIPVEEFQNAQGELEVQVGD--VVNVALDAVED 77

Query: 511 GISENIMVMALQQAKRGRLHILNEM-------------SKVLSESRLQLGEFTPRVEIMA 557
           G  E  +  + ++A R    I  E               KV     ++L      +    
Sbjct: 78  GFGETKL--SREKAVRHESWIELEKAYEEQATVTGLINGKVKGGFTVELNGVRAFLPGSL 135

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+ + + GK +   V +   K N      V ++  ++ E E +++    + ++ 
Sbjct: 136 VDTRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSQDREEILANLA 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F
Sbjct: 191 EGAEV-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKF 248

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D DR ++ L +K + Q+    I 
Sbjct: 249 DKDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +       ++   +I     V     
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAQNHPVGSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K    N  
Sbjct: 342 ISLGLKQCKANPW 354



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 128/360 (35%), Gaps = 62/360 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +   +     R+  H  L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGVRAFLPGSLVDTRPV-----RDTLH--LEGKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    LA +  G  +         G VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSQDREEI----LANLAEGAEVK--------GTVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +        I+  ++        + R  +   + +
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKF-----DKDRTRVSLGLKQ 261

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           +  +    + +  P    +      + +      I  G + +  + E      NI     
Sbjct: 262 LGQDPWAAIAQNHPVGSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKV 321

Query: 593 VKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +  +    +    E  R                  +        +G++  + DFG F+
Sbjct: 322 VSLGDTVEVMVLEIDEERRRISLGLKQCKANPWLQFAETHNKGDKVEGKIKSITDFGIFI 381

Query: 638 HFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
              G  DGLVH+S +S   VA    V   K+GD V   +L  D  + +I L +K ++++ 
Sbjct: 382 GLEGGIDGLVHLSDISWN-VAGEEAVRNYKKGDEVAAVVLQVDSAKERISLGIKQLEEDP 440



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   +    VV+    GA V   G  +G +        R A  +D V  G
Sbjct: 439 DPFNNFVAVNKKGAVVSATVVEADSKGAKVELNGGVEGYI--------RAADLTDEVNAG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS++  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVRAKDQ 516


>gi|225025738|ref|ZP_03714930.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC
           23834]
 gi|224941519|gb|EEG22728.1| hypothetical protein EIKCOROL_02642 [Eikenella corrodens ATCC
           23834]
          Length = 583

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 23/260 (8%)

Query: 449 MDAGVPISKPVAGIA--MGLVKDGDDFIILSDISGDEDHLGHMDFKV----------AGT 496
           M+ G  I+  V  I     +V  G     L D++  ++  G ++ KV             
Sbjct: 42  MNQGEVITAEVVAITDKHVIVNAGLKSESLIDLNEFKNAQGELEVKVGDFVTVTIESVEN 101

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
             G T +  +          +  A++  +     I  ++   L+     +  F P   + 
Sbjct: 102 GFGETKLSREKAKRAADWLALEEAMESGEILSGVINGKVKGGLTVMINSIRAFLPGSLVD 161

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
             P     +  G         VE    K++   +  V    + L E     E  +++ + 
Sbjct: 162 VRPVKDTSHFEGKE-------VEFKVIKLDRKRNNVVVSRRAVLEETL--GEERQALLET 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L 
Sbjct: 213 LQEGTVVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLK 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD DR ++ L MK + ++  
Sbjct: 272 FDQDRSRVSLGMKQLGEDPW 291



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 289 DPWSGLARRYPARTRLFGKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 348

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +LD D DR +I L MK    N  + 
Sbjct: 349 GDEVEVMILDIDEDRRRISLGMKQCQANPWEE 380



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +                      G V  + DFG FV   G  D
Sbjct: 357 LDIDEDRRRISLGMKQCQAN----PWEEFAANFNKGDKLTGAVKSITDFGIFVGLPGNID 412

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 413 GLVHLSDLSWS--ESGEEAVRKYKKGEDVEAVVLSIDVEKERISLGIKQLEGDP 464



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 21/196 (10%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR----------VEIMAIPPDQIR 564
           + + + +      R  I   M +  +    +      +          +    I      
Sbjct: 350 DEVEVMILDIDEDRRRISLGMKQCQANPWEEFAANFNKGDKLTGAVKSITDFGIFVGLPG 409

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR----------EMIRSIT 614
           N+ G+         E     V     G    A     ++E  R          +   S  
Sbjct: 410 NIDGLVHLSDLSWSESGEEAVRKYKKGEDVEAVVLSIDVEKERISLGIKQLEGDPFGSYI 469

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + +   + KG V  V   GA V         +  S+  +ERV   +  +KEGD V   +
Sbjct: 470 SINDKGALVKGTVKSVEAKGAEVQLADEVVAYLPASEFDSERVEDLTTKLKEGDEVEAVI 529

Query: 675 LDFDDRGK-IKLSMKV 689
           +  D + + IKLS+K 
Sbjct: 530 VTVDRKNRNIKLSVKA 545


>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
          Length = 227

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 21/225 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R++S +  +L R  GSS F + DT A+     G  E +   + L     +
Sbjct: 4   RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSAL-TAVYGPAEVKSSKELL-----D 57

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +   F P       + G     +     + R+A+ PV+ +TA    ++ ++ ++   
Sbjct: 58  KATVQTVFRP-------KTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHD 110

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD---DFIILSDISGDED--HLG 487
           DG+     +  +S+AL+DAGVP+S  +A +    +   D   +  +L D + +E      
Sbjct: 111 DGALLACALNSASMALIDAGVPMSAVLAAVTCAWLPAADGSSERRLLLDPTLEEQTAATS 170

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
              F    T+  I         G ++ +     ++ A++   ++L
Sbjct: 171 IATFAFESTNQEIV---FSSTEGQLTVDEYFYTIEMAQKAAANVL 212



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 84/217 (38%), Gaps = 27/217 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAV 70
           R L +E   ++R +DG+   +  +T  L  V      +S K+  D   +   ++ +T   
Sbjct: 14  RELSIEHAVLSR-ADGSSRFSQRDTSALTAVYGPAEVKSSKELLDKATVQTVFRPKTGLA 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G               ++ +   ++ +++ P+  +     T + + V     + +    +
Sbjct: 73  GV--------------DDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHDDGALLACA 118

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYI---NG----QYVLNPRLDED--QGSLDLFVSGT 181
           + +AS AL+ +G+P    +      ++   +G    + +L+P L+E     S+  F   +
Sbjct: 119 LNSASMALIDAGVPMSAVLAAVTCAWLPAADGSSERRLLLDPTLEEQTAATSIATFAFES 178

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
            +  ++      QL+ D     I         V+  +
Sbjct: 179 TNQEIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFM 215


>gi|296112015|ref|YP_003622397.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
 gi|295833547|gb|ADG41428.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
          Length = 395

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D    +I+ S  A     R       D      + +G V +V DFGAFV 
Sbjct: 245 DKVNVKILALDTEKGRISLSIKAT---QRGPWDEAADQIAAGDVLEGTVKRVKDFGAFVE 301

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GD V VK+LD      +I LSMK +++   + 
Sbjct: 302 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERE 361



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +  +     V ++ +G V ++ DFGAFV   G  D
Sbjct: 163 IEIDPANARLILSRKAVAAQERAAQLAEVFSKLTVGEVVEGTVARLTDFGAFVDL-GGVD 221

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +RV   +DV+ +GD V VK+L  D ++G+I LS+K   +     
Sbjct: 222 GLVHVSEISHDRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRGPWDE 275



 Score = 37.6 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV-MDFGAFVHFCGARDGLVHISQLSTERV 657
                      + S  D  +V  +  G+++ +  D  A V      +G+V   + S +R 
Sbjct: 1   MSETNNEFLAALESAADQIKVGDVITGELLAIDNDNQAVVGLPTGEEGVVPAREYSDDRN 60

Query: 658 AKTSDVVKEGDTVWVKLLD---FDDRGKIK--LSMKVVD 691
              +D +K GD++   ++     D  G +   LS K +D
Sbjct: 61  INLADELKIGDSIEAVVISNVTSDKEG-VSYLLSKKRLD 98


>gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
 gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11]
 gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281491326|ref|YP_003353306.1| 50S ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
 gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
 gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11]
 gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
 gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
           NZ9000]
 gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
          Length = 408

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               + +   V    +G V ++ DFGAFV      +GLVH+SQ+S ERV    DV+K G 
Sbjct: 269 PWEQVEEKAPVGSTVEGTVKRLTDFGAFVELYPGVEGLVHVSQISWERVENPKDVLKVGQ 328

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            V VK+LD      +I LS+K +++   +P
Sbjct: 329 VVNVKVLDVKPAEERISLSIKALEEAPARP 358



 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    +++     G+ I   +      + ++      I S        A EM +      
Sbjct: 139 IDTYFVKDTKKFVGEEIEAKI------IEVNASENRFILSRRAVVEAEAIEMRKEAFAQL 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V +V +FGAFV   G  DGLVH+S+LS  R+ + SD VK GD V VK+L  
Sbjct: 193 QEGDIVEGTVSRVTNFGAFVDL-GGIDGLVHVSELSHSRIKRPSDAVKPGDVVNVKILKL 251

Query: 678 DDR-GKIKLSMKVVDQNTGKPI 698
           D   G++ LS+K       + +
Sbjct: 252 DPEAGRLSLSLKATQPGPWEQV 273


>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
 gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
          Length = 402

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 12/137 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+ +G  V   +       + ID+D      S    E           T    
Sbjct: 233 HVDKPSDVLKVGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATADLN 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G +V VK+L+ D
Sbjct: 282 EGDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNID 341

Query: 679 DR-GKIKLSMKVVDQNT 694
               +I LS+K  D N 
Sbjct: 342 PSDRRISLSIKAADSNA 358



 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    +E  RE     +     V  + +G+V ++ +FG
Sbjct: 153 YIGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AF+   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 213 AFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
 gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
          Length = 257

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R    + G +    GS+    G+T+ IV V  G RE ++   ++  +   
Sbjct: 35  RPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSV-FGPRESKK---AMVYSDVG 90

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
               + +    AT     +G+ ++       +  +A+   +        T+ + + + ES
Sbjct: 91  RLNCNVSCTTFATPARG-LGSDNK---EFSSMLHKALEGAIMLETFPKTTVDVFALVLES 146

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  +SLAL DAG+ +   VAG+++  +       ++ D   +E+        
Sbjct: 147 GGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRN----LIIDPILEEESFQDGSLM 202

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +    S     Q+ +  G  S   +  A+Q        +   M   L E+
Sbjct: 203 ITCMPSRYEVTQLSIT-GEWSTAKLNEAMQLCLDACSKLDKIMRACLKEA 251



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 23/222 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAV 70
           RP    TG +   + G+  A +G T V+ +V   R  K      D   L  N    T+A 
Sbjct: 45  RPAFFRTGAV-NSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFAT 103

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
             +  G   +      E   ++ + ++ +I  +     K    V   V++      P V+
Sbjct: 104 PARGLGSDNK------EFSSMLHKALEGAI--MLETFPKTTVDVFALVLESGGSDLPVVI 155

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           S   AS AL  +G+     V G  V  +    +++P L+E+    GSL +    ++  V 
Sbjct: 156 SC--ASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCMPSRYEVT 213

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + +   + S   + +A+    + C  +     K+ + C KE
Sbjct: 214 QLSITG-EWSTAKLNEAMQLCLDACSKL----DKIMRACLKE 250


>gi|94499395|ref|ZP_01305932.1| ribosomal protein S1 [Oceanobacter sp. RED65]
 gi|94428149|gb|EAT13122.1| ribosomal protein S1 [Oceanobacter sp. RED65]
          Length = 560

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 476 LSDISGDEDHLGH---MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           L D    E  +G    +  +      G T +  +      S   +  A +  +     I 
Sbjct: 54  LDDNGELEVAVGDEVPVSLEAVEDGFGETKLSREKAKRAESWKELEKAFEAQEVVTGVIN 113

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            ++    +     +  F P      +    +R+   + GK +   V +   K N      
Sbjct: 114 GKVKGGFTVDVASIRAFLPGSL---VDVRPVRDTAHLEGKELEFKVIKLDQKRN-----N 165

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E   ++E    + ++ E  ++  G V  + D+GAFV   G  DGL+HI+ +
Sbjct: 166 VVVSRRAVLETANSQERDELLANLQEGQEV-TGIVKNLTDYGAFVDL-GGVDGLLHITDM 223

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + +R+   S++V  GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 224 AWKRIKHPSEIVNVGDEIQVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    ++     VN+ D+  VK+          +        +   +I      N    
Sbjct: 222 DMAWKRIKHPSEIVNVGDEIQVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPENTKVT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +R +
Sbjct: 282 AKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDDVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 342 ISLGIKQCQVNPWEE 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+         +   I KG+V++V    A +      +  +  S++S +RV    + +KE
Sbjct: 438 RDPFAEFVAENDKGTIVKGKVIEVDAKAATIEIAEGVEATLRASEISRDRVEDARNALKE 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           GD V  K++  D + + I LS+K  D+   K  +
Sbjct: 498 GDEVEAKIISVDRKNRNIALSVKSKDEVDDKEAI 531



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           ++          +   
Sbjct: 316 IHPSKVVQV----GDDVEVMV------LDIDEERRRISLGIKQCQVN----PWEEFSSQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S     +  D V   K+GD +   +
Sbjct: 362 NKGDKISGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--EQGEDAVRNYKKGDELETII 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++++ 
Sbjct: 420 LSIDPERERISLGVKQLERDP 440


>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
 gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
          Length = 402

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G  V   +       + ID+D      S    E           T    
Sbjct: 233 HVDKPSDVLKAGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATANLS 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D
Sbjct: 282 EGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNID 341

Query: 679 DR-GKIKLSMKVVDQNTGKP 697
               +I LS+K  D N    
Sbjct: 342 PSDRRISLSIKAADSNASSD 361



 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    +E  RE     +     V  + +G+V ++ +FG
Sbjct: 153 YIGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AF+   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 213 AFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|322514508|ref|ZP_08067545.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976]
 gi|322119578|gb|EFX91656.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976]
          Length = 568

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 36  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 95

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 96  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 155

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + + KG
Sbjct: 156 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVKG 209

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD V VK+L FD DR ++ 
Sbjct: 210 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDRTRVS 268

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 269 LGLKQLGQDPWAAIA 283



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKE 666
                      N    G++  + DFG F+   G  DGLVH+S +S   V+    V   K+
Sbjct: 365 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VSGEEAVRSYKK 423

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           GD V   +L  D  + +I L +K ++ + 
Sbjct: 424 GDEVEAVVLQVDAVKERISLGIKQLESDP 452



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +   I  G+VV++   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 451 DPFTNFVDSTKKGAIVTGKVVEIDAKGVKVELAGGVEAFIRANEATRDRVEDITTVISAG 510

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D++  K    D + + + LS++  D+
Sbjct: 511 DSIKAKYTGVDRKSRVVNLSVRAKDE 536



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +       ++   +I     VN    
Sbjct: 234 DMAWKRVKHPSEVVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAQNHPVNSKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 294 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSVGDVVEVMVLEVDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKANPWE 367


>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 257

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 13/230 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R    + G +    GS+    G+T+ IV V  G RE ++   ++  +   
Sbjct: 35  RPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSV-FGPRESKK---AMVYSDVG 90

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
               + +    AT     +G+ ++       +  +A+   +        T+ + + + ES
Sbjct: 91  RLNCNVSCTTFATPARG-LGSDNK---EFSSMLHKALEGAIMLETFPKTTVDVFALVLES 146

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  +SLAL DAG+ +   VAG+++  +       ++ D   +E+        
Sbjct: 147 GGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRN----LIIDPILEEESFQDGSLM 202

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +    S     Q+ +  G  S   +  A+         +   M   L E+
Sbjct: 203 ITCMPSRYEVTQLSIT-GEWSTAKLNEAMHLCLDACSKLDKIMRACLKEA 251



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 23/222 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAV 70
           RP    TG +   + G+  A +G T V+ +V   R  K      D   L  N    T+A 
Sbjct: 45  RPAFFRTGAV-NSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFAT 103

Query: 71  -GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
             +  G   +      E   ++ + ++ +I  +     K    V   V++      P V+
Sbjct: 104 PARGLGSDNK------EFSSMLHKALEGAI--MLETFPKTTVDVFALVLESGGSDLPVVI 155

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           S   AS AL  +G+     V G  V  +    +++P L+E+    GSL +    ++  V 
Sbjct: 156 SC--ASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCMPSRYEVT 213

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
            + +   + S   + +A+    + C  +     K+ + C KE
Sbjct: 214 QLSITG-EWSTAKLNEAMHLCLDACSKL----DKIMRACLKE 250


>gi|332288796|ref|YP_004419648.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
 gi|330431692|gb|AEC16751.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
          Length = 549

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 21/261 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
            G  ++  V  I  G V         + I  +E      +  V   D     + +D    
Sbjct: 20  QGSIVTGTVVAINKGFVFVDAGLKSEAAIPAEEFQNAQGEITVQVGDQ--VQVALDAVED 77

Query: 511 GISENIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIP 559
           G  E  +            AL++A   +  ++  ++ KV     ++L      +    + 
Sbjct: 78  GFGETKLSREKAVRHESWIALEKAYEDQETVVGLINGKVKGGFTVELNGVRAFLPGSLVD 137

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              +R+ + + GK +   V +   K N      V ++  ++ E E ++E  + +  + E 
Sbjct: 138 TRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSQERDQLLETLQEG 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV    ++V  GD V VK+L FD 
Sbjct: 193 AEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPGEIVNVGDEVTVKVLKFDR 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           DR ++ L +K + Q+    I 
Sbjct: 251 DRTRVSLGLKQLGQDPWAAIA 271



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 17/197 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    +  L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQERDQLLETLQEGAEVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+  G  VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPGEIVNVGDEVTVKVLKFDRDRTRVSLGLKQLGQDPWAAIAENYPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGIEGLVHVSEMDWTNKNIHPSKVVSVGDEVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L +K    N  +
Sbjct: 339 RRRISLGLKQCKPNPWQ 355



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ +V    G  +  +V      + ID++           +        +   D  
Sbjct: 316 IHPSKVVSV----GDEVEVMV------LEIDEERRRISLGLKQCKPN----PWQQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD V   +L
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVRNYKKGDEVEAIVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 QVDAAKERISLGIKQLEEDP 440



 Score = 44.9 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +   +VV V   GA V      +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVSINKKGSVVSAKVVDVDAKGAKVELDNGVEGYIRTADLNGE--------VNVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVD 691
           D V  K    D + +I  LS++  D
Sbjct: 491 DVVEAKYTGVDRKARIVHLSIRAKD 515


>gi|219870701|ref|YP_002475076.1| 30S ribosomal protein S1 [Haemophilus parasuis SH0165]
 gi|219690905|gb|ACL32128.1| 30S ribosomal protein S1 [Haemophilus parasuis SH0165]
          Length = 555

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 21/257 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +   V  I  G V         S I  +E      + +V   D  +  + +D    G  E
Sbjct: 24  VKGTVVAIQKGYVLVDAGLKSESAIPAEEFFNAQGELEVQVGD--VVDVALDAVEDGFGE 81

Query: 515 NIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQI 563
             +            AL++A   +  ++  ++ KV     ++L      +    +    +
Sbjct: 82  TKLSREKAKRNESWAALEKAFEEQATVVGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPV 141

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R+ + + G+ +   V +   K N      V ++  ++ E  ++ +    + ++ E +++ 
Sbjct: 142 RDSLNLEGQTLELKVIKLDQKRN-----NVVVSRRAVIETTSSADREEVLANLVEGSEV- 195

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ +
Sbjct: 196 KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTR 254

Query: 683 IKLSMKVVDQNTGKPIV 699
           + L +K + Q+    I 
Sbjct: 255 VSLGLKQLGQDPWAAIA 271



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I KG+ V+V   G  V      +G V  ++ + +RV   + V+  G
Sbjct: 439 DPFTNFVEGTKKGAIVKGKAVEVDAKGVKVELADGVEGYVRAAEATRDRVEDITTVISVG 498

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D +  K    D + +I  LS++  D+
Sbjct: 499 DEIEAKYTGVDRKARIVNLSIRAKDE 524



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                 +    N   KG++  + DFG F+   G  DGLVH+S +S        + V   K
Sbjct: 353 PWEHFAETHNKNDKVKGKIKSITDFGIFIGLEGGIDGLVHLSDISWNMAG--EEAVRNYK 410

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 411 KGDEVETVVLQVDAVKERISLGIKQLESDP 440



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 264 QDPWAAIAQNHPVNSKLSGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVN 323

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 324 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 355


>gi|167855105|ref|ZP_02477877.1| 30S ribosomal protein S1 [Haemophilus parasuis 29755]
 gi|167853740|gb|EDS24982.1| 30S ribosomal protein S1 [Haemophilus parasuis 29755]
          Length = 555

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 21/257 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +   V  I  G V         S I  +E      + +V   D  +  + +D    G  E
Sbjct: 24  VKGTVVAIQKGYVLVDAGLKSESAIPAEEFFNAQGELEVQVGD--VVDVALDAVEDGFGE 81

Query: 515 NIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQI 563
             +            AL++A   +  ++  ++ KV     ++L      +    +    +
Sbjct: 82  TKLSREKAKRNESWAALEKAFEEQATVVGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPV 141

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R+ + + G+ +   V +   K N      V ++  ++ E  ++ +    + ++ E +++ 
Sbjct: 142 RDSLNLEGQTLELKVIKLDQKRN-----NVVVSRRAVIETTSSADREEVLANLVEGSEV- 195

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ +
Sbjct: 196 KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTR 254

Query: 683 IKLSMKVVDQNTGKPIV 699
           + L +K + Q+    I 
Sbjct: 255 VSLGLKQLGQDPWAAIA 271



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I KG+ V+V   G  V      +G V  ++ + +RV   + V+  G
Sbjct: 439 DPFTNFVEGTKKGAIVKGKAVEVDAKGVKVELADGVEGYVRAAEATRDRVEDITTVISVG 498

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D +  K    D + +I  LS++  D+
Sbjct: 499 DEIEAKYTGVDRKARIVNLSIRAKDE 524



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                 +    N   KG++  + DFG F+   G  DGLVH+S +S        + V   K
Sbjct: 353 PWEHFAETHNKNDKVKGKIKSITDFGIFIGLEGGIDGLVHLSDISWNMAG--EEAVRNYK 410

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 411 KGDEVETVVLQVDAVKERISLGIKQLETDP 440



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 264 QDPWAAIAQNHPVNSKLSGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVN 323

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 324 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 355


>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
 gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans]
          Length = 245

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 95/242 (39%), Gaps = 10/242 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R +   +        GSS   +G+ + I +VT G +E    +
Sbjct: 5   EIYSPEGLRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVT-GPQEP--KL 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S     +    +  N    +  E S+      RR +       R     +         
Sbjct: 62  RSQMNVTKATISVALNITRFSKIERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQ 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I   + + DG    + + G +LAL+DAG+ +   ++G+++GL     D   L D++  
Sbjct: 122 IEIQIHVLQQDGGLMSSLINGITLALIDAGIAMYDYISGVSIGLY----DTTPLLDLNSV 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +E+ +  +   V G    ++ + ++ KI       ++            ++++  +   E
Sbjct: 178 EENAMSSVTLGVVGKSEKLSLLLVEDKIPLDRMESVLAIGIAGSHRIRELMDKELRKHGE 237

Query: 542 SR 543
            R
Sbjct: 238 RR 239



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 73/190 (38%), Gaps = 11/190 (5%)

Query: 24  ARQSDGAVLATYGETVVLATVVYDRSLKDGQD----FFPLTVNYQERTYAVGKIPGGYLR 79
           A  SDG+     G   V+  V   +  K           ++V      ++  +      +
Sbjct: 33  ANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKATISVALNITRFSKIERSKSSHK 92

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            E R  E +  + R  ++++  +     + + ++ I+V+Q D      +  +   + AL+
Sbjct: 93  NERRVLEMQTALVRTFEKNV--MLHLYPRTQIEIQIHVLQQDGGLMSSL--INGITLALI 148

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQLSE 197
            +G+     + G  +   +   +L+    E+    S+ L V G  + + ++ +E   +  
Sbjct: 149 DAGIAMYDYISGVSIGLYDTTPLLDLNSVEENAMSSVTLGVVGKSEKLSLLLVEDK-IPL 207

Query: 198 DVVLDAIIFG 207
           D +   +  G
Sbjct: 208 DRMESVLAIG 217


>gi|213024775|ref|ZP_03339222.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 106

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKEDLRVSCFI 258
           +L A++FGH + + VI+AI+ L K   K       +  +  L   ++ + +  L  +  I
Sbjct: 1   MLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRI 60

Query: 259 PEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVR 304
            +K  R  Q+D +K + +    +E  + +  E+  +   I+  VVR
Sbjct: 61  TDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVR 106


>gi|328462395|gb|EGF34445.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus MTCC 5462]
          Length = 121

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +  + ++  ++ E   A         +     + +G+V ++ +FGAFV   G  DGLVH+
Sbjct: 1   ENRLILSHRAIVEASKAEARKEIFAKIQPG-DVVEGKVARLTNFGAFVDL-GGVDGLVHV 58

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S++S + V K SDV+K G  + VK+L+ D DR +I LS+K         I
Sbjct: 59  SEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDI 108


>gi|1004353|gb|AAA77669.1| ribosomal protein S1 homolog [Homo sapiens]
          Length = 406

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D    +I+ S  A     R       D      + +G V +V DFGAFV 
Sbjct: 255 DKVDVKILALDTEKGRISLSIKAT---QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 311

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GD V VK+LD      +I LSMK +++   + 
Sbjct: 312 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERE 371



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +  +     V ++ +G V ++ DFGAFV   G  D
Sbjct: 173 IEIDPANARLILSRKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDL-GGVD 231

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +RV   +DV+ +GD V VK+L  D ++G+I LS+K   +     
Sbjct: 232 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDE 285



 Score = 37.6 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV-MDFGAFVHFCGARDGLVHISQ 651
            +               + S  D  +V  +  G+++ +  D  A V      +G+V   +
Sbjct: 5   RRTLDVMSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPARE 64

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLD 676
            S +R    +D +K GDT+   ++ 
Sbjct: 65  YSDDRNINLADELKIGDTIEAVVIS 89


>gi|317153562|ref|YP_004121610.1| RNA-binding S1 domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943813|gb|ADU62864.1| RNA binding S1 domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 479

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 17/217 (7%)

Query: 489 MDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           ++  V G+DSG I   +    IGG+  N++  A          + +      + + +Q  
Sbjct: 73  VELYVVGSDSGSIKLSRALSGIGGL--NMLEEAKSGGLPVEGKVESTCKGGFNVALMQRR 130

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            F P  +I     +     +G   + +   +EQ G  +       V    + L    AA 
Sbjct: 131 AFCPVSQIDNRFVEDAETYVGKTLEFLITKLEQHGRNI-------VVSRRALLERETAAA 183

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
               S     +V    +G V ++  FGAFV      DGLVH+SQ+S  R+    + V  G
Sbjct: 184 --TESFVAGTKVGDEVEGTVTRLAPFGAFVEIMPGLDGLVHVSQISHARIGHPEEAVTVG 241

Query: 668 DTVWVKLLDFDD-----RGKIKLSMKVVDQNTGKPIV 699
             +  K++  +      R KI LSMK + Q+    I 
Sbjct: 242 QKIKAKIVGIEQTDKPGRLKISLSMKELAQDPWDTIA 278



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 8/208 (3%)

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM--- 556
           IT ++   +   +S   ++     A         ++   +  +  +L  F   VEIM   
Sbjct: 158 ITKLEQHGRNIVVSRRALLERETAAATESFVAGTKVGDEVEGTVTRLAPFGAFVEIMPGL 217

Query: 557 --AIPPDQIRNV-IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
              +   QI +  IG   + +    +     V I+          SL+  E A++   +I
Sbjct: 218 DGLVHVSQISHARIGHPEEAVTVGQKIKAKIVGIEQTDKPGRLKISLSMKELAQDPWDTI 277

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
                      G+VV++ DFGAFV      DGLVH+S++S T+RV K +D V EG  V V
Sbjct: 278 ASTFAEGDKVTGKVVRLADFGAFVEIAPGVDGLVHVSEMSYTKRVNKPADFVSEGQQVAV 337

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           K+   D +  +I LSMK  + +    + 
Sbjct: 338 KIKSIDPQTRRIGLSMKDAEGDPWMDVA 365



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +A  +    + D     +  +G V K   FG F+       GL+  S ++        
Sbjct: 353 MKDAEGDPWMDVADKYRPGQKVQGIVEKQEQFGIFIQLEPGITGLLPKSVIARSEKPAVF 412

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + +  GDTV V + +      KI L+     +N
Sbjct: 413 EKLHSGDTVEVFIGEVKAAERKISLTTGDAQEN 445


>gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 692

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    VE     +NI DD  VKI   +  +   +        +     T+  EV  +  
Sbjct: 496 DIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVIN 555

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV ++DFGAFV      +GL+H+S++S E V K SD +  GD V VK+L  D +  KI
Sbjct: 556 GKVVNLLDFGAFVEVSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKI 615

Query: 684 KLSMKVVDQNTGK 696
            LS+K + +   +
Sbjct: 616 GLSIKALKEAPER 628



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 15/179 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +     I       L+   + +  F P      I P  ++N         + 
Sbjct: 376 LREAFENDQTVEGDITGSNKGGLTARVMGINGFVPAS---QIAPYFVKNF-------KKF 425

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           + E    K+   D+   ++  S    +E   E +    D  E  ++  G+V ++ DFGAF
Sbjct: 426 VGEHWDLKIISIDERKNRLVLSRKDIVE---EKLDEQWDELEEGQVITGKVARLTDFGAF 482

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           V   G+ DGL+H+S ++  RV    DV+  GD + VK+L  + ++ +I L  K + +  
Sbjct: 483 VEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKP 540



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             +  G ++ V D   FV      DG+V + +++ E      D  + G  + V ++  DD
Sbjct: 296 RDVVNGTIIDVKDDEVFVDIQYRADGIVKLDEMTEEEKENPKDHFEVGQEIEVYVIKLDD 355

Query: 680 -RGKIKLSMKVVD 691
             G + LS + V+
Sbjct: 356 GEGNVALSTRRVE 368


>gi|307198400|gb|EFN79342.1| ATP-dependent RNA helicase DHX8 [Harpegnathos saltator]
          Length = 1232

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/112 (41%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLV 647
           G          E       +  ++  PEV KIY G+V  ++ FG FV   G R   +GLV
Sbjct: 243 GRYTRRKLDDGERGRRSRSMEELSMEPEVGKIYAGKVANIVPFGCFVSLEGLRRRLEGLV 302

Query: 648 HISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           HISQL  E RVA  SDVV  G  V VK+L    + K+ LSMK VDQ TG+ +
Sbjct: 303 HISQLRREGRVANASDVVSRGQRVLVKVLSIGGQ-KVSLSMKDVDQETGRDL 353


>gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 692

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    VE     +NI DD  VKI   +  +   +        +     T+  EV  +  
Sbjct: 496 DIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVIN 555

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV ++DFGAFV      +GL+H+S++S E V K SD +  GD V VK+L  D +  KI
Sbjct: 556 GKVVNLLDFGAFVEVSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKI 615

Query: 684 KLSMKVVDQNTGK 696
            LS+K + +   +
Sbjct: 616 GLSIKALKEAPER 628



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 15/179 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +     I       L+   + +  F P      I P  ++N         + 
Sbjct: 376 LREAFENDQTVEGDITGSNKGGLTARVMGINGFVPAS---QIAPYFVKNF-------KKF 425

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           + E    K+   D+   ++  S    +E   E +    D  E  ++  G+V ++ DFGAF
Sbjct: 426 VGEHWDLKIISIDERKNRLVLSRKDIVE---EKLDEQWDELEEGQVITGKVARLTDFGAF 482

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           V   G+ DGL+H+S ++  RV    DV+  GD + VK+L  + ++ +I L  K + +  
Sbjct: 483 VEI-GSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQLLEKP 540



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             +  G ++ V D   FV      DG+V + +++ E      D  + G  + V ++  DD
Sbjct: 296 RDVVNGTIIDVKDDEVFVDIQYRADGIVKLDEMTEEEKENPKDHFEVGQEIEVYVIKLDD 355

Query: 680 -RGKIKLSMKVVD 691
             G + LS + V+
Sbjct: 356 GEGNVALSTRRVE 368


>gi|59712366|ref|YP_205142.1| 30S ribosomal protein S1 [Vibrio fischeri ES114]
 gi|197334803|ref|YP_002156581.1| ribosomal protein S1 [Vibrio fischeri MJ11]
 gi|59480467|gb|AAW86254.1| 30S ribosomal subunit protein S1 [Vibrio fischeri ES114]
 gi|197316293|gb|ACH65740.1| ribosomal protein S1 [Vibrio fischeri MJ11]
          Length = 557

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIQLEKAYEDAETVMGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLASLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 133/356 (37%), Gaps = 54/356 (15%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +     R+  H  L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPV-----RDTLH--LEGKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    LA +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDEL----LASLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAI------PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
              +++   +  + + RV  +          + +  ++ +               VN+ D
Sbjct: 267 WVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 590 DGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +  V +               +      ++  +         G++  + DFG F+   G 
Sbjct: 327 EVEVMVLEIDEERRRISLGLKQCKANPWQTFAEAQAKGDKVTGKIKSITDFGIFIGLDGG 386

Query: 643 RDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            DGLVH+S +S    A   D V+E   GD +   +L  D +R +I L +K ++++ 
Sbjct: 387 IDGLVHLSDISWN--ATGEDAVREYKKGDEISAVVLAVDAERERISLGVKQMEEDP 440



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +    + +G +  S+LS +RV   S ++  G
Sbjct: 439 DPFNNYLADNKKGTLVNGTVSAVDAKGATITLADSVEGYIRTSELSRDRVEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D+V  K    D + + + LS+K  D+   + 
Sbjct: 499 DSVEAKFTGVDRKNRVVNLSIKAKDEADEQE 529


>gi|33152424|ref|NP_873777.1| 30S ribosomal protein S1 [Haemophilus ducreyi 35000HP]
 gi|33148647|gb|AAP96166.1| 30S ribosomal protein S1 [Haemophilus ducreyi 35000HP]
          Length = 555

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 21/257 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +   V  I  G V     F   S I  +E      + +V   D     + +     G  E
Sbjct: 24  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFINAQGELEVQIGDQ--VDVVLKAVEDGFGE 81

Query: 515 NIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQI 563
            ++            AL++A   +  ++  ++ KV     ++L      +    +    +
Sbjct: 82  TVVSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPV 141

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R+ + + GK +   V +   K N      V ++  ++ E E +++    + ++ E + + 
Sbjct: 142 RDSLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSQDRDEVLANLVEGS-VI 195

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ +
Sbjct: 196 TGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTR 254

Query: 683 IKLSMKVVDQNTGKPIV 699
           + L +K + Q+    I 
Sbjct: 255 VSLGLKQLGQDPWAAIA 271



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKE 666
                      N    G++  + DFG F+   G  DGLVH+S +S   V     V   K+
Sbjct: 353 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VTGEEAVRNYKK 411

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD V   +L  D  + +I L +K ++ + 
Sbjct: 412 GDEVEAVVLQVDAAKERISLGIKQLESDP 440



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +   I  G+VV V   G  V   G  +  +  ++ + ERV   + V+  G
Sbjct: 439 DPFTNFVDSTKKGAILTGKVVDVDTKGVKVELEGGVEAFIRANEATRERVEDITTVISVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D++  K    D + + + LS++  D+
Sbjct: 499 DSIEAKYTGIDRKSRLVNLSVRAKDE 524



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 264 QDPWAAIAHNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 323

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 324 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 355


>gi|209695657|ref|YP_002263586.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
 gi|208009609|emb|CAQ79905.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
          Length = 557

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIQLEKAYEDAETVMGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLASLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 133/356 (37%), Gaps = 54/356 (15%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +     R+  H  L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPV-----RDTLH--LEGKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    LA +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDEL----LASLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAI------PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
              +++   +  + + RV  +          + +  ++ +               VN+ D
Sbjct: 267 WVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 590 DGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +  V +               +      ++  +         G++  + DFG F+   G 
Sbjct: 327 EVEVMVLEIDEERRRISLGLKQCKANPWQTFAEAQAKGDHVSGKIKSITDFGIFIGLDGG 386

Query: 643 RDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            DGLVH+S +S    A   D V+E   GD +   +L  D +R +I L +K ++++ 
Sbjct: 387 IDGLVHLSDISWN--ATGEDAVREYKKGDEISAVVLAVDAERERISLGVKQMEEDP 440



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +    + +G +  S+LS +R+   S ++  G
Sbjct: 439 DPFNNYLADNKKGTLVNGTVSAVDAKGATITLADSVEGYIRTSELSRDRIEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D+V  K    D + + + LS+K  D+   + 
Sbjct: 499 DSVEAKFTGVDRKNRVVNLSIKAKDEADEQE 529


>gi|326692495|ref|ZP_08229500.1| 40S ribosomal protein S1 [Leuconostoc argentinum KCTC 3773]
 gi|1085376|pir||JC4026 ribosomal protein S1-like DNA-binding protein - human
          Length = 396

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D    +I+ S  A     R       D      + +G V +V DFGAFV 
Sbjct: 245 DKVDVKILALDTEKGRISLSIKAT---QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 301

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GD V VK+LD      +I LSMK +++   + 
Sbjct: 302 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERE 361



 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +  +     V ++ +G V ++ DFGAFV   G  D
Sbjct: 163 IEIDPANARLILSRKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDL-GGVD 221

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +RV   +DV+ +GD V VK+L  D ++G+I LS+K   +     
Sbjct: 222 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDE 275



 Score = 37.2 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKV-MDFGAFVHFCGARDGLVHISQLSTERV 657
                      + S  D  +V  +  G+++ +  D  A V      +G+V   + S +R 
Sbjct: 1   MSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRN 60

Query: 658 AKTSDVVKEGDTVWVKLLD 676
              +D +K GDT+   ++ 
Sbjct: 61  INLADELKIGDTIEAVVIS 79


>gi|254426874|ref|ZP_05040581.1| S1 RNA binding domain protein [Alcanivorax sp. DG881]
 gi|196193043|gb|EDX88002.1| S1 RNA binding domain protein [Alcanivorax sp. DG881]
          Length = 791

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +         + + I +G V  V +FGAFV     +DG
Sbjct: 616 DILSELEKPGRDPRPEFKAAALKEGVETLKDLKQSMILEGTVTNVTNFGAFVDIGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVH+S L+ + V     VV  GD V VK+LD D DR +I L+M++ DQ T K
Sbjct: 676 LVHVSALADKFVEDPHQVVAPGDIVKVKVLDVDLDRKRISLTMRMDDQPTEK 727


>gi|1098565|gb|AAA97575.1| ribosomal S1 protein [Homo sapiens]
          Length = 352

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D    +I+ S  A     R       D      + +G V +V DFGAFV 
Sbjct: 201 DKVDVKILALDTEKGRISLSIKAT---QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 257

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GD V VK+LD      +I LSMK +++   + 
Sbjct: 258 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERE 317



 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +  +     V ++ +G V ++ DFGAFV   G  D
Sbjct: 119 IEIDPANARLILSRKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDL-GGVD 177

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +RV   +DV+ +GD V VK+L  D ++G+I LS+K   +     
Sbjct: 178 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDE 231


>gi|294638114|ref|ZP_06716371.1| protein YhgF [Edwardsiella tarda ATCC 23685]
 gi|291088746|gb|EFE21307.1| protein YhgF [Edwardsiella tarda ATCC 23685]
          Length = 775

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D
Sbjct: 649 VGMILEGCVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVDDPHKVVKAGDIVKVKVLEVD 708

Query: 679 -DRGKIKLSMKVVDQNTGK 696
            +R +I L+M+ +D+  G+
Sbjct: 709 LERKRIALTMR-LDEQPGE 726


>gi|257455031|ref|ZP_05620275.1| ribosomal protein S1 [Enhydrobacter aerosaccus SK60]
 gi|257447544|gb|EEV22543.1| ribosomal protein S1 [Enhydrobacter aerosaccus SK60]
          Length = 557

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
              G T +  +      + N++    +  +     I  ++    +     +  F P   +
Sbjct: 76  NGMGQTLLSREKAKRAETWNVLEKLYENNEIVTGVISGKVKGGFTVDIGSVRAFLPGSLV 135

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
              P   +R+   + GK +   + +   K N      V ++  ++ E E + E    +++
Sbjct: 136 DTRP---VRDTAHLEGKELEFKIIKLDQKRN-----NVVVSRRAVMESENSAEREALLSN 187

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + E  ++  G V  + D+GAFV   G  DGL+HI+ ++  R+   S+VV+ G  + VK+L
Sbjct: 188 LEEGQEVV-GVVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEVGQELKVKVL 245

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPIV 699
            FD +R ++ L +K +  +  + ++
Sbjct: 246 KFDRERNRVSLGLKQLGTDPWQDVL 270



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            K +V  + D+G F       +GLVH+S++    +    S VV+ GD + V++LD D DR
Sbjct: 279 VKARVTNLTDYGCFAEIADGIEGLVHVSEMDHTNKNIHPSKVVQIGDEIMVQILDIDEDR 338

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L +K    N  + 
Sbjct: 339 RRISLGIKQTMPNPWEE 355



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 22/209 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR----------VEIMAIPPD 561
           I + IMV  L      R  I   + + +     +  +   +          +    I   
Sbjct: 323 IGDEIMVQILD-IDEDRRRISLGIKQTMPNPWEEFDKNHQKGDKVSGTIKSITDFGIFIG 381

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR----------EMIR 611
               + G+         E     +   + G    A     + EA R          +   
Sbjct: 382 LEGGIDGLVHLSDLSWTESGEEAIRNYNKGDTVEAVILSVDAEANRISLGIKQLNSDPFN 441

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + KG V  V   GA V      +G +  S++  ++V   + V+  GD V 
Sbjct: 442 EYLVSNDRGAVVKGVVTDVDAKGAKVKLADDVEGYLRASEIQQDKVDDATTVLNVGDEVE 501

Query: 672 VKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            K++  D + + I LS++  D+   +  +
Sbjct: 502 AKIVSVDRKTRGINLSVRAKDEAEQRDAI 530


>gi|327543203|gb|EGF29638.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
          Length = 598

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 17/254 (6%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AL+D G      V     G  +D         +  +E      +   A    G+ ++   
Sbjct: 61  ALVDVGFKSEGTVGLDEWGPEEDQPKIGDTVKVLIEEMED---ELGAADDPYGMISLSKR 117

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
                I    M+  + + +     ++ ++   L      +  F P  ++    P  I + 
Sbjct: 118 KAEKIIEWEAMMETVAEGQVVTGTVIRKIKGGLLVDIG-VNVFLPGSQVDIRRPGDIGDF 176

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKG 625
           IG        +V+    K+   DD    I  S  + IE  RE  R+      EV +I KG
Sbjct: 177 IG-------RVVQAEVLKI---DDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKG 226

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + DFGAFV   G  DGL+HI+ ++ ER+   ++++     + VK+L  D ++ KI 
Sbjct: 227 IVKNIADFGAFVDL-GGIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIA 285

Query: 685 LSMKVVDQNTGKPI 698
           L +K  D+N  + I
Sbjct: 286 LGLKQKDRNPWENI 299



 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 23/211 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I   +    L+     R  +++  S +  +           +E+  I    ++N+   G 
Sbjct: 177 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 572 KV-------IRGIVEQTGAKV-------NIDDDGTVKIASSSLAEIEAA-------REMI 610
            V       +  I +    ++       +ID +  VK+      + + A       R   
Sbjct: 237 FVDLGGIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPW 296

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDT 669
            +I     V  ++ G+VV VM +GAFV      +GLVHIS++S  +RV   S++V  GD 
Sbjct: 297 ENIETKYPVESVHPGEVVNVMSYGAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDK 356

Query: 670 VWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
           + V +L  D  G ++ L MK   +N    ++
Sbjct: 357 IDVMILGVDPEGQQLSLGMKQTLKNPWDEVL 387



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 106/264 (40%), Gaps = 40/264 (15%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           V  I  G+VK+  DF    D+ G +   H+  M ++  G  + + ++  ++++  +  + 
Sbjct: 220 VGQIRKGIVKNIADFGAFVDLGGIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHID- 278

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV--------IG 568
                    R +  I   + +        +    P      + P ++ NV        + 
Sbjct: 279 ---------REKQKIALGLKQKDRNPWENIETKYPVES---VHPGEVVNVMSYGAFVKLE 326

Query: 569 MGGKVIRGIVEQTGAK--------VNIDDDGTVKIASSSLA-------EIEAAREMIRSI 613
            G + +  I E +  K        VNI D   V I               +  +     +
Sbjct: 327 PGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV 386

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWV 672
            +     K  KG+V  + ++GAF+      DGL+H+S +S  R +A  S+V+++G  +  
Sbjct: 387 LERYPEGKDVKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIEC 446

Query: 673 KLLDFDD-RGKIKLSMKVVDQNTG 695
           ++L  D+ R +I L +K +D +  
Sbjct: 447 RILSVDEQRRRIALGLKQLDNDPW 470



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ KG+V K+ +FG F+      +GL+HIS+L+  +V    +VVK GD + VK+L  
Sbjct: 479 QPGQLVKGEVTKITNFGVFIGLEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRV 538

Query: 678 D-DRGKIKLSMKVVD 691
           D D  KI LS+K VD
Sbjct: 539 DTDERKIGLSLKRVD 553


>gi|191638372|ref|YP_001987538.1| 30S ribosomal protein S1 [Lactobacillus casei BL23]
 gi|227535138|ref|ZP_03965187.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631542|ref|ZP_04674573.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|190712674|emb|CAQ66680.1| 30S Ribosomal protein S1 [Lactobacillus casei BL23]
 gi|227187183|gb|EEI67250.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239526007|gb|EEQ65008.1| 30S ribosomal protein S1 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327382400|gb|AEA53876.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           LC2W]
 gi|327385601|gb|AEA57075.1| Hydroxymethylbutenyl pyrophosphate reductase [Lactobacillus casei
           BD-II]
          Length = 439

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 4/116 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + I+  +  + ++  ++ E   A         +   + + +G+V ++ +FGAFV   G  
Sbjct: 168 IEIEPSENRLILSHRAIVEASKAEARKEIFAKIQPGDTV-EGKVARLTNFGAFVDL-GGV 225

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           DGLVH+S++S + V K SDV+K G  + VK+L+ D DR +I LS+K         I
Sbjct: 226 DGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDI 281



 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH--MDFKVAGTDSGITAMQ 504
           A  +AG  I+ PV  +  G +            S  EDH       +K    +  I  ++
Sbjct: 112 AKYEAGETITAPVTSVVKGGLVVNAGVRGFVPASMVEDHFVEDLSQYKGKELEFKIIEIE 171

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP----- 559
                  +S   +V A +   R  +    +    +     +L  F   V++  +      
Sbjct: 172 PSENRLILSHRAIVEASKAEARKEIFAKIQPGDTVEGKVARLTNFGAFVDLGGVDGLVHV 231

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +   + +     V++   E     +N+D D   +I+ S  A +    + I         
Sbjct: 232 SEISFDHVDKPSDVLKVGQEIKVKVLNVDPD-RNRISLSIKATLPQPWDDIEEKAP---A 287

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             +  G V ++  FGAFV      +GLVHISQ+S E VA  +DV+KEG  V VK+L  D 
Sbjct: 288 GSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDP 347

Query: 679 DRGKIKLSMKVVDQNTG 695
           D  ++ LS+K + +   
Sbjct: 348 DAHRLALSIKALQERPA 364



 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLS 653
           ++ +++ E               ++    K  V+ V D    V   G   +G+V I +LS
Sbjct: 1   MSDNNVNENTETMADALKSVTTVKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELS 60

Query: 654 TERVAKTSDVVKEGDTVWVKLLDF----DDRGKIKLSMKVVD-QNTGKPI 698
           T+ +    DV K GD + + +L       + G+  LS + ++ Q   K I
Sbjct: 61  TQPIDDIHDVAKVGDKLDLVVLSTVGKDKENGQFLLSKRRLEAQKVWKEI 110


>gi|331656982|ref|ZP_08357944.1| ribosomal protein S1 [Escherichia coli TA206]
 gi|331055230|gb|EGI27239.1| ribosomal protein S1 [Escherichia coli TA206]
          Length = 366

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|116494865|ref|YP_806599.1| 30S ribosomal protein S1 [Lactobacillus casei ATCC 334]
 gi|116105015|gb|ABJ70157.1| SSU ribosomal protein S1P [Lactobacillus casei ATCC 334]
          Length = 439

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 4/116 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + I+  +  + ++  ++ E   A         +   + + +G+V ++ +FGAFV   G  
Sbjct: 168 IEIEPSENRLILSHRAIVEASKAEARKEIFAKIQPGDTV-EGKVARLTNFGAFVDL-GGV 225

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           DGLVH+S++S + V K SDV+K G  + VK+L+ D DR +I LS+K         I
Sbjct: 226 DGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDI 281



 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH--MDFKVAGTDSGITAMQ 504
           A  +AG  I+ PV  +  G +            S  EDH       +K    +  I  ++
Sbjct: 112 AKYEAGETITAPVTSVVKGGLVVNAGVRGFVPASMVEDHFVEDLSQYKGKELEFKIIEIE 171

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP----- 559
                  +S   +V A +   R  +    +    +     +L  F   V++  +      
Sbjct: 172 PSENRLILSHRAIVEASKAEARKEIFAKIQPGDTVEGKVARLTNFGAFVDLGGVDGLVHV 231

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +   + +     V++   E     +N+D D   +I+ S  A +    + I         
Sbjct: 232 SEISFDHVDKPSDVLKVGQEIKVKVLNVDPD-RNRISLSIKATLPQPWDDIEEKAP---A 287

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             +  G V ++  FGAFV      +GLVHISQ+S E VA  +DV+KEG  V VK+L  D 
Sbjct: 288 GSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDP 347

Query: 679 DRGKIKLSMKVVDQNTG 695
           D  ++ LS+K + +   
Sbjct: 348 DAHRLALSIKALQERPA 364



 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLS 653
           ++ +++ E               ++    K  V+ V D    V   G   +G+V I +LS
Sbjct: 1   MSDNNVNENTETMADALKSVTTVKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELS 60

Query: 654 TERVAKTSDVVKEGDTVWVKLLDF----DDRGKIKLSMKVVD-QNTGKPI 698
           T+ +    DV K GD + + +L       + G+  LS + ++ Q   K I
Sbjct: 61  TQPIDDIHDVAKVGDKLDLVVLSTVGKDKENGQFLLSKRRLEAQKVWKEI 110


>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
 gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
 gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 260

 Score =   99 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 17/233 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR     R    Q G      GS+    G T+ IV V  G RE ++   ++  +  
Sbjct: 38  PRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSV-FGPRESKK---AMLYSDT 93

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                + ++   AT    +          +  +  +A+   +        T+ + + + E
Sbjct: 94  GRLNCNVSYTTFATPIRGQGTDNK----EYSAMLHKALEGAVMLHTFPKTTVDVFALVLE 149

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S GS     +  +SLAL DAG+ +   V  +++          I+ D + DE+       
Sbjct: 150 SGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKN----IIIDPTSDEEAWQDGSL 205

Query: 492 KVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            VA       IT +      G  S+  +  A++        + + + + L ++
Sbjct: 206 MVAYMPARKEITQL---TLTGEWSDGKITNAVELCMDACSKLCDILRERLKDA 255



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 16/205 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G+T V+ +V   R  K      D   L  N    T+A      G   +E  
Sbjct: 61  ASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQGTDNKE-- 118

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P ++S   AS AL  +G+
Sbjct: 119 ---YSAMLHKALEGAV--MLHTFPKTTVDVFALVLESGGSDLPIIISC--ASLALADAGI 171

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V    V       +++P  DE+    GSL +         +       + S+  +
Sbjct: 172 MMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSL-MVAYMPARKEITQLTLTGEWSDGKI 230

Query: 201 LDAIIFGHNECKPVIEAISKLAKMC 225
            +A+    + C  + + + +  K  
Sbjct: 231 TNAVELCMDACSKLCDILRERLKDA 255


>gi|296133096|ref|YP_003640343.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola sp. JR]
 gi|296031674|gb|ADG82442.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens
           JR]
          Length = 674

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   V  I +G+VV++  FGAFV      DGLVHISQL+  RVA  S+VV  GD
Sbjct: 545 PWDTVAEKYPVGSIVEGKVVRLAPFGAFVELEPGVDGLVHISQLANRRVANCSEVVSAGD 604

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693
            V  K+++ D ++ +I LSMK V++N
Sbjct: 605 MVKAKVIEVDAEKKRISLSMKEVEEN 630



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +  D    + S      E A+          +  ++ KG V ++ DFGAFV   G  D
Sbjct: 436 IELRRDARKVVLSRKAILEEEAQAKKAETLRNLQSGQVVKGTVKRLTDFGAFVDI-GGID 494

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GL+H+S+++  RV   S+VVKEGD + V +LD D    K+ LS+K V  N  
Sbjct: 495 GLLHVSEMAWYRVGHPSEVVKEGDQIEVFILDVDKNTEKVSLSLKKVLPNPW 546



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I++        ++  E     + ++     P    +  G VV+V D    V   G  +G+
Sbjct: 267 IEEVKRKMEEMTNRDEGMNMEKALQFKAFHP--GDMVTGTVVQVNDDEVMVDVGGKSEGV 324

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLS-MKVVDQNTG 695
           + + + S        ++   GD V V +L   DD GKI LS  K   + T 
Sbjct: 325 IPLRESSCCNHNNLKELFTVGDQVKVVVLKAQDDEGKIILSKRKADAELTW 375



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD+G + ++         A      + +  +     +G V +V+  G  +       G +
Sbjct: 357 DDEGKIILSKRKAD----AELTWGCLEEAFDSGTPVEGTVREVVKGGLLLDL--GVQGFM 410

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDRGKIKLSMKVVDQNTGK 696
             S +    V   +  +  G  +  K+++   D  K+ LS K + +   +
Sbjct: 411 PASLVERSYVEDLNQYL--GQKLKAKIIELRRDARKVVLSRKAILEEEAQ 458


>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 401

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    IE  RE    ++     V  + +G+V ++ +FG
Sbjct: 152 YIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFG 211

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 212 SFVDI-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 270

Query: 694 T 694
            
Sbjct: 271 P 271



 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+ +G  V   +       + ID+D      S    E           T    
Sbjct: 232 HVDKPSDVLKVGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATSSLN 280

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + +G+V  + +FGAFV       GLVH+S++S + V K SDV+  G  V VK+L+ D
Sbjct: 281 EGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNID 340

Query: 679 D-RGKIKLSMKVVDQNTG 695
             + +I LS+K  D    
Sbjct: 341 PSKRRISLSIKQADPENA 358


>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 401

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    IE  RE    ++     V  + +G+V ++ +FG
Sbjct: 152 YIGKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFG 211

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 212 SFVDI-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 270

Query: 694 T 694
            
Sbjct: 271 P 271



 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 12/138 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+ +G  V   +       + ID+D      S    E           T    
Sbjct: 232 HVDKPSDVLKVGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATSSLN 280

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + +G+V  + +FGAFV       GLVH+S+++ + V K SDV+  G  V VK+L+ D
Sbjct: 281 EGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNID 340

Query: 679 D-RGKIKLSMKVVDQNTG 695
             + +I LS+K VD    
Sbjct: 341 PSKRRISLSIKQVDPENA 358


>gi|304385043|ref|ZP_07367389.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
 gi|304329237|gb|EFL96457.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
          Length = 403

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    G+ ++  + +        +D  + ++  ++   E A +    ++ + 
Sbjct: 147 IENRYVDDLNAYKGQTLKVKIIEIKP-----EDNRLILSHKAVINAERAEKRQEVLSSLQ 201

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G+V ++ +FGAFV   G  DGLVHIS++S ERV K SDV+K G+ V VK+L  
Sbjct: 202 EG-EVVTGKVARLTNFGAFVDL-GGIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSV 259

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R +I LS+K       + I 
Sbjct: 260 DPERERISLSIKQTQPGPWENIA 282



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++  +V+  G        E+   KV   D    +I+ S             +I +   V
Sbjct: 239 VEKPSDVLKPG--------EEVQVKVLSVDPERERISLSIKQTQP---GPWENIAEKAPV 287

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             +  G+V ++ DFGAFV      +GLVHISQ+S + +A  +DV++EG  + VK+L+   
Sbjct: 288 GAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHP 347

Query: 679 DRGKIKLSMKVVDQNT 694
           +  ++ LS+K +++  
Sbjct: 348 EERRLALSIKALEEAP 363



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDF-GAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  +  +V  +  G+V+ + D     V   G   +G+V + +LST+ +   +D VK GD 
Sbjct: 17  NSVEEVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELSTQHIDNINDEVKIGDE 76

Query: 670 VWVKLLDF--DDR--GKIKLSMKVV 690
           + + ++    DD+  G   LS K +
Sbjct: 77  LELVVISRIGDDKEGGSYLLSRKRL 101


>gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
 gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
          Length = 403

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 12/137 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G  V   +       + IDDD      S    E           T    
Sbjct: 233 HVDKPSDVLKAGQDVKVKV-------IGIDDDRHRISLSIKQTEPS----PFEQATADLN 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +++G+V  + +FGAFV       GLVH+S++S + V K SDV+K   TV VK+L+ D
Sbjct: 282 EGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNID 341

Query: 679 DR-GKIKLSMKVVDQNT 694
               +I LS+K  D N 
Sbjct: 342 PSDRRISLSIKAADSNA 358



 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    IE  RE     +     V  + +G+V ++ +FG
Sbjct: 153 YIGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AF+   G  DGLVHIS++S + V K SDV+K G  V VK++   DDR +I LS+K  + +
Sbjct: 213 AFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|270291294|ref|ZP_06197516.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
 gi|270280140|gb|EFA25976.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
          Length = 403

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    G+ ++  + +        +D  + ++  ++   E A +    ++ + 
Sbjct: 147 IENRYVDDLNAYKGQTLKVKIIEIKP-----EDNRLILSHKAVINAERAEKRQEVLSSLQ 201

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G+V ++ +FGAFV   G  DGLVHIS++S ERV K SDV+K G+ V VK+L  
Sbjct: 202 EG-EVVTGKVARLTNFGAFVDL-GGIDGLVHISEISYERVEKPSDVLKPGEEVQVKVLSV 259

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R +I LS+K       + I 
Sbjct: 260 DPERERISLSIKQTQPGPWENIA 282



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++  +V+  G        E+   KV   D    +I+ S             +I +   V
Sbjct: 239 VEKPSDVLKPG--------EEVQVKVLSVDPERERISLSIKQTQP---GPWENIAEKAPV 287

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             +  G+V ++ DFGAFV      +GLVHISQ+S + +A  +DV++EG  + VK+L+   
Sbjct: 288 GAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHP 347

Query: 679 DRGKIKLSMKVVDQNT 694
           +  ++ LS+K +++  
Sbjct: 348 EERRLALSIKALEEAP 363



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDF-GAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  +  +V  +  G+V+ + D     V   G   +G+V + +LST+ +   +D VK GD 
Sbjct: 17  NSVEEVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELSTQHIDNINDEVKIGDE 76

Query: 670 VWVKLLDF--DDR--GKIKLSMKVV 690
           + + ++    DD+  G   LS K +
Sbjct: 77  LELVVISRIGDDKEGGSYLLSRKRL 101


>gi|294787731|ref|ZP_06752975.1| ribosomal protein S1 [Simonsiella muelleri ATCC 29453]
 gi|294484024|gb|EFG31707.1| ribosomal protein S1 [Simonsiella muelleri ATCC 29453]
          Length = 582

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 21/243 (8%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKV----------AGTDSGITAMQMDMKIGGIS 513
             +V  G     L DI+  ++  G ++ KV               G T +  +       
Sbjct: 59  FVIVNAGLKSESLIDINEFKNAHGDLEVKVGDFVTVTIESVENGFGETKLSREKAKRAAD 118

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A++  +     I  ++   L+     +  F P      +    I++     GK 
Sbjct: 119 WITLEEAMEDGEILSGVINGKVKGGLTVMINSIRAFLPGSL---VDVRPIKDTSHFEGKE 175

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I   V +   K N      V ++  ++ E     E    + ++ E + I KG V  + D+
Sbjct: 176 IEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKALMENLQE-DTIVKGIVKNITDY 229

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+ ++ L +K + +
Sbjct: 230 GAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLRFDQDKQRVSLGLKQLGE 288

Query: 693 NTG 695
           +  
Sbjct: 289 DPW 291



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 289 DPWDGLARRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 348

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +LD D D+ +I L MK    N  + 
Sbjct: 349 GDEVEVMILDIDEDKRRISLGMKQCQSNPWQD 380



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +    ++   + T   + +KI KG V  + DFG FV   G  D
Sbjct: 357 LDIDEDKRRISLGMKQCQSNPWQDFEANYT---KGDKI-KGAVKSITDFGVFVGLPGNID 412

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 413 GLVHLSDLSWTEAG--EEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 464



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +  +  S+  +ERV   +  +KEGD V   ++  D + 
Sbjct: 477 LVKGTVKAVEAKGATVVLADEVEAYLPASEFDSERVEDLTTKLKEGDEVEAIIVTVDRKN 536

Query: 682 K-IKLSMKVVD 691
           + IKLS+K  D
Sbjct: 537 RNIKLSVKAKD 547


>gi|116629547|ref|YP_814719.1| 30S ribosomal protein S1 [Lactobacillus gasseri ATCC 33323]
 gi|238852697|ref|ZP_04643107.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282852070|ref|ZP_06261428.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311110810|ref|ZP_07712207.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|116095129|gb|ABJ60281.1| SSU ribosomal protein S1P [Lactobacillus gasseri ATCC 33323]
 gi|238834843|gb|EEQ27070.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282556830|gb|EFB62434.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311065964|gb|EFQ46304.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
          Length = 399

 Score = 99.6 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G  V   +       + IDDD      S                T+   
Sbjct: 233 HVDKPSDVLKAGQDVKVKV-------IGIDDDRHRISLSIKQTLPS----PFEEATEGLH 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G+V  +  FGAFV       GLVH+S+++ + V K SDV+K G TV VK+L  D
Sbjct: 282 EGDIIEGEVKTLTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVD 341

Query: 679 DR-GKIKLSMKVVDQNTGK 696
               +I LS+K  D N  K
Sbjct: 342 PSDRRISLSIKQADPNAAK 360



 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++   K+   D    ++  S    IE  RE    ++     V    +G+V ++  FG
Sbjct: 153 YIGKKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AFV   G  DGLVHIS++S + V K SDV+K G  V VK++   DDR +I LS+K    +
Sbjct: 213 AFVDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|87119277|ref|ZP_01075175.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
 gi|86165668|gb|EAQ66935.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
          Length = 561

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 90/215 (41%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + ++     I  ++    +    
Sbjct: 66  DEVKVALDAVEDGFGETKLSREKAKRAETWEVLEKAYEDSEIVVGVINGKVKGGFTVDIA 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   + G  +   + +   K N      V ++  ++ E  
Sbjct: 126 NIRAFLPGSL---VDVRPIRDTSHLEGVDLEFKLIKLDQKRN-----NVVVSRRAVMEAT 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S+++
Sbjct: 178 NSAERETLLASLEEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEII 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 AVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +L
Sbjct: 275 PEGTKV-TAKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           D D +R +I L +K    N  + 
Sbjct: 334 DIDEERRRISLGVKQCTPNPWEE 356



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V +V   GA V      +  + +S+LS +RV   + V+KEGD+V   +++ D + 
Sbjct: 453 IVTGTVKEVDAKGAVVVLAEGVEATLKVSELSRDRVEDATSVLKEGDSVEAAVINVDRKA 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D +  K
Sbjct: 513 RTIALSIKQKDASEEK 528



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G  +  ++      ++ID++                           
Sbjct: 316 IHPSKVVQI----GDEVEVMI------LDIDEERRRISLGVKQCTPN----PWEEFATSY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G +  + DFG F+   G  DGLVH+S LS +      + V   K+GD +   +
Sbjct: 362 NKGDKISGGIKSITDFGVFIGLEGGIDGLVHLSDLSWDETG--EEAVRQYKKGDNLETVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++++ 
Sbjct: 420 LSIDAERERISLGVKQLEEDP 440


>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
          Length = 273

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 12/186 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS----- 367
           R+DGR    +R + AQ+       GSS F  G T+ + VVT G  E +Q           
Sbjct: 14  RVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVT-GPSEQQQAQAQAQRRGGQ 72

Query: 368 --GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
             G      +++      ++ +  +     +R         +A+   +        ++ +
Sbjct: 73  APGRDAASIIVNVVIAGFSSVDRKKRARSDKRTQEIEITIAKALSSTVHTHLFPHSSITV 132

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDISG 481
              +   DGS   A +  ++LA++DAG+P++  +A    G         D    L D++ 
Sbjct: 133 SLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAGSTSSYAAGDDSADPLLDLNN 192

Query: 482 DEDHLG 487
            E+   
Sbjct: 193 QEEQEL 198



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 33/225 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRS-------------LKDGQDFFPLTVNYQERTYAVGKI 73
           +DG+     G T V+  V                     G+D   + VN       +   
Sbjct: 36  ADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQAPGRDAASIIVN-----VVIAGF 90

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSM 131
                ++ +R  +    I   I +++           +   V ++V+  D   S     +
Sbjct: 91  SSVDRKKRARSDKRTQEIEITIAKALSSTVHTHLFPHSSITVSLHVLSQDG--SLLAALI 148

Query: 132 VAASAALMLSGLPFEGPVVGAQVD----YINGQYVLNPRLD---EDQGSL-DLFVS--GT 181
            AA+ A++ +G+P    +          Y  G    +P LD   +++  L  L V+  G 
Sbjct: 149 NAATLAVIDAGIPMTDYIAACTAGSTSSYAAGDDSADPLLDLNNQEEQELPFLTVASLGD 208

Query: 182 QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
            D V+ +  E+  +    +   ++ G + CK V   + K  K   
Sbjct: 209 SDRVVALVCESR-VQVSRLEGMLVVGLDGCKQVKMFLDKTIKDRG 252


>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 401

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    IE  RE    ++     V  + +G+V ++ +FG
Sbjct: 152 YIGKAIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFG 211

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +FV   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 212 SFVDI-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 270

Query: 694 T 694
            
Sbjct: 271 P 271



 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+ +G  V   +       + ID+D      S    E           T    
Sbjct: 232 HVDKPSDVLKVGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATSSLN 280

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + +G+V  + +FGAFV       GLVH+S++S + V K SDV+  G  V VK+L+ D
Sbjct: 281 EGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNID 340

Query: 679 D-RGKIKLSMKVVDQNTG 695
             + +I LS+K  D    
Sbjct: 341 PSKRRISLSIKQADPENA 358


>gi|255539416|ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1177

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHF--CGARDG 645
           D      +  +       R    S T   PE+ ++YKG+V +VMD G FV       ++G
Sbjct: 191 DRHRRDGSVDNGETHRETRRNNGSYTSSDPELYRVYKGRVSRVMDSGCFVQLNDFRGKEG 250

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           LVH+SQ++T R+A   DVVK    V+VK++    + K+ LSM+ VDQN+GK ++
Sbjct: 251 LVHVSQMATRRIANAKDVVKRDQDVFVKVISVSGQ-KLSLSMRDVDQNSGKDLL 303


>gi|298368577|ref|ZP_06979895.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282580|gb|EFI24067.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
          Length = 561

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEG-TVVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 245 KVLKFDQDKQRVSLGMKQLGEDPW 268



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWNGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEE 357



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D               A        +  
Sbjct: 317 VHPSK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC---QANPWEEFAANHN 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 364 KGDKI-SGAVKSITDFGVFVGLPGNIDGLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D D+ +I L +K ++ + 
Sbjct: 421 LAIDVDKERISLGIKQLEGDP 441



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  ++ S+ERV    +VVKEGD V   +   D + 
Sbjct: 454 LVKGTVKSVDAKGAVIALSDEVEGYLPAAEWSSERVEDLRNVVKEGDEVEAIVATVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I+LS+K  D    + 
Sbjct: 514 RSIRLSVKAKDAKENRE 530


>gi|146282681|ref|YP_001172834.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
 gi|145570886|gb|ABP79992.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
          Length = 582

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +      S  ++  A    +  +  I  ++    +    
Sbjct: 88  DEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 147

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 148 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 199

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 200 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 257

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 258 NVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 292



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 181 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 240

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I        
Sbjct: 241 HITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGT 300

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 301 RVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 360

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 361 RRRISLGIKQCKSNPWED 378



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 461 DPFSNYAAVNDKGSIVRGTVKEVDAKGAIIDLGNDIEATLKASEISRDRVEDARNVLKEG 520

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K++  D + + I LS+K  D    K 
Sbjct: 521 DEVEAKIISIDRKSRVISLSIKSKDVEDEKD 551



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 338 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 383

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S     +   V   K+GD +   +L
Sbjct: 384 NKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEPGE-EAVRRFKKGDELDTVIL 442

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 443 SVDPERERISLGIKQLEDDP 462


>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
          Length = 410

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +         + +G V +V+DFGAFV      +GLVH+SQ+S + +A  SDV+K GD
Sbjct: 274 PWEAAASEAPEGTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGD 333

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D+ ++ LS+K +++   + 
Sbjct: 334 KVKVKVLEVNPDKQRLSLSIKALEEAPARE 363



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    ++++    G+ IR  + +  A    D    +        E  AA      + +  
Sbjct: 144 IENRFVQDLNQYKGQTIRAKIIEINA---ADSRLILSRRDVLNEERSAALAR---VFNEL 197

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  + +G+V ++ +FGAF+   G  DGLVH+S++S ERV++ SDV+  G+ V VK+L  
Sbjct: 198 SVGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGL 256

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ +I LS+K       +
Sbjct: 257 DPEKERISLSIKATQPGPWE 276


>gi|71906915|ref|YP_284502.1| 30S ribosomal protein S1 [Dechloromonas aromatica RCB]
 gi|71846536|gb|AAZ46032.1| SSU ribosomal protein S1P [Dechloromonas aromatica RCB]
          Length = 559

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  ++     G T +  D      + N +  AL         I  ++   L+    
Sbjct: 65  DFVQVAIEMLEDGYGATRLSRDRAKRIAAWNFLEEALNNNSLVTGTITGKVKGGLTVMSN 124

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK +   V +   K N      V ++  ++ E  
Sbjct: 125 GVRAFLPGSLVDMRP---VKDTTPYEGKTLEFKVIKLDRKRN-----NVVMSRRAVLEAT 176

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A ++  + + ++ E   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 177 ADKDREKLLENLKEGTTV-KGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVL 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GD V  K+L FD ++ ++ L MK +  +  
Sbjct: 235 NVGDEVTAKILKFDAEKNRVSLGMKQLGDDPW 266



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I           G+V  + D+G+FV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWVGIARRYPAGTRLFGKVTNLTDYGSFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D +R +I L MK    N    
Sbjct: 324 GDEVEVMILEIDEERRRISLGMKQCQANPWDD 355



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID++           +               
Sbjct: 315 VHPSK---VVQLGDEVEVMILE-------IDEERRRISLGMKQCQAN----PWDDFAMNH 360

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +     KG +  + DFG F+   G  DGLVH+S LS      +     K+GD V   +L 
Sbjct: 361 KKGDKVKGAIKSITDFGIFIGLPGGIDGLVHLSDLSWSATGEEAIRNFKKGDEVEAVVLG 420

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D ++ +I L +K ++ + 
Sbjct: 421 IDVEKERISLGIKQLEGDP 439



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     E N I    V  V   GA +   G  +G +  S+ S +R+   S  +K G
Sbjct: 438 DPYTNFIATHEKNSIVNCTVKSVDARGAVLTLDGENEGYLRASEFSRDRIDDLSQHLKVG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           DTV   +++ D + + I LS+K  D
Sbjct: 498 DTVEAMIINVDRKTRGINLSIKAKD 522


>gi|254785518|ref|YP_003072947.1| 30S ribosomal protein S1 [Teredinibacter turnerae T7901]
 gi|237685745|gb|ACR13009.1| ribosomal protein S1 [Teredinibacter turnerae T7901]
          Length = 560

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 88/215 (40%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      S  ++  A +  +     I  ++    +    
Sbjct: 66  DEVQVALETVEDGFGETRLSREKAKRAESWKVLEAAHESEEVITGVINGKVKGGFTVDVA 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R    + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 GIRAFLPGSL---VDVRPVRETTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVMEQT 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NTEEREELLATLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 AVGDEIEVKVLKFDRERNRVSLGLKQLGEDPWAAI 270



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT         K  +  + D+G F       +GLVH+S++    +    S VV  
Sbjct: 265 DPWAAITQRYPEGAKVKATITNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVNL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D +R +I L +K   +N  
Sbjct: 325 GDEVEVMILDIDEERRRISLGIKQCQENPW 354



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  ++      ++ID++           +         + ++  
Sbjct: 316 IHPSKVVNL----GDEVEVMI------LDIDEERRRISLGIKQCQEN----PWDAFSNQY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S        + V   K+GD +   +
Sbjct: 362 AKGDKITGKIKSITDFGIFIGLEGGIDGLVHLSDISWNEAG--EEAVRKYKKGDELETVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K +D++ 
Sbjct: 420 LAIDPERERISLGIKQLDEDP 440



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  V    A +      +G +  S++S ++V    + +KEGD V  K+ + D + 
Sbjct: 453 IVNGTVKTVDAKEAVIALADDVEGTLKASEISRDKVEDARNALKEGDDVEAKITNVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D +  K
Sbjct: 513 RTIILSIKAKDSDDEK 528


>gi|85108466|ref|XP_962580.1| ATP-dependent RNA helicase DHX8 [Neurospora crassa OR74A]
 gi|28924189|gb|EAA33344.1| ATP-dependent RNA helicase DHX8 [Neurospora crassa OR74A]
          Length = 1179

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLV 647
           G  K       + +  R   R + D P + K+Y+G V  + DFGAFV+  G +   DGLV
Sbjct: 179 GRRKGRYDDEYDGDFRRPPPREVDDSPILYKVYEGHVTGIKDFGAFVNLHGVKGKVDGLV 238

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           H+S    +RV   SD++ +G  V VK++   + G++ LSMK VDQ TG  + 
Sbjct: 239 HVSAFG-QRVNHPSDLLSKGQEVKVKVIKL-EGGRVGLSMKDVDQETGMDLA 288


>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
 gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
          Length = 495

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I +G+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV I+D GTV+    ++                 +   + +GQVVKV      +     
Sbjct: 9   EKVAINDIGTVEDFIKAVDSTIK----------NFDDGDLVEGQVVKVDHDEVLLDIGYK 58

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
            +G++   +LS ++     +VV+ GDT+   ++   D  G++ LS K   
Sbjct: 59  TEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQ 108


>gi|86157945|ref|YP_464730.1| 30S ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|197122752|ref|YP_002134703.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. K]
 gi|220917535|ref|YP_002492839.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85774456|gb|ABC81293.1| SSU ribosomal protein S1P [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196172601|gb|ACG73574.1| ribosomal protein S1 [Anaeromyxobacter sp. K]
 gi|219955389|gb|ACL65773.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 568

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 7/123 (5%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            +VE     ++++++        SL   +A  +   ++++   V    KG+V KV DFGA
Sbjct: 425 DVVEAVVLNIDVENE------RFSLGIKQAHVDPWTTLSERHPVGARVKGRVTKVTDFGA 478

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV      +GLVH+S++  ERV    DVV+EG  V VK++D D    K+ LSMK V+++ 
Sbjct: 479 FVEIEPGIEGLVHVSEMKDERVENPRDVVQEGQEVEVKVIDMDLQDRKVALSMKAVNRDG 538

Query: 695 GKP 697
           G+ 
Sbjct: 539 GED 541



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   V    KG+VV + D+GAF+      +GLVH+S++S  +RV   S +V  
Sbjct: 277 DPWHRADEKYPVGTRVKGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNV 336

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GD V   +LD D +  +I L MK ++ N  
Sbjct: 337 GDQVEAVVLDIDPKAKRISLGMKQIEANPW 366



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           I     + + I E+   KV       G + ++   L E E       ++ ++ E   I K
Sbjct: 150 IRPVRNLDKLIGEKFKFKVIKFNKKRGNIVLSRRVLLEKEREELKKETLKNLKEGA-ILK 208

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + D+GAF+   G  DGL+H++ +S  R+   S++ + G  V V +L FD    ++
Sbjct: 209 GVVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPTSERV 267

Query: 684 KLSMKVVDQNTG 695
            L +K + ++  
Sbjct: 268 SLGLKQIQEDPW 279



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID         S   +   A          P    I +G+V  V DFG FV      D
Sbjct: 345 LDIDPK---AKRISLGMKQIEANPWTLLEDKYPIGTTI-RGEVRNVTDFGIFVGVEEGID 400

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH+S +S  ER+    +  K+GD V   +L+ D +  +  L +K    +  
Sbjct: 401 GLVHVSDISWTERIKHPGEKFKKGDVVEAVVLNIDVENERFSLGIKQAHVDPW 453



 Score = 39.5 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            +     E  K+  G V+++    A +      +G V IS+ ST    + +  VK GD V
Sbjct: 24  EASAGPIEEGKVVNGTVIQLTKDYAVIDIGYKSEGQVPISEFSTAPGGEPA--VKVGDKV 81

Query: 671 WVKLLDF-DDRGKIKLS 686
            V +    +D G + LS
Sbjct: 82  EVLVESRENDTGMVVLS 98


>gi|167749865|ref|ZP_02421992.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702]
 gi|167657177|gb|EDS01307.1| hypothetical protein EUBSIR_00833 [Eubacterium siraeum DSM 15702]
          Length = 713

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 24/264 (9%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S++L+     I+  VA   +   ++   F    ++         
Sbjct: 472 VVEDSVNSVGVDLNTASVSLLGYVAGINSAVAKNIVTYREENGVFTNRKELLKVSKLGKK 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +    +       A +         L ++S  +   + Q+  
Sbjct: 532 AYEQCAGFMR-IHGGKYPLDNTSVHPESYK-AAEALLEKCGFKLADVSGGIPSIKEQVR- 588

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
                   AI   ++ + +G+G   +  I  E      +  D+    +  + +A+I    
Sbjct: 589 --------AIGVKKLSDELGIGEMTLADITNELAKPGRDPRDELPPPLLRTDVADIN--- 637

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +   I  G V  V+DFG FV     +DGLVHISQ+  + +    +VVK G
Sbjct: 638 --------SLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVG 689

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVV 690
           D V VK+LD D  + +I L+MK V
Sbjct: 690 DIVKVKVLDIDPAKKRISLTMKGV 713


>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
          Length = 245

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 97/244 (39%), Gaps = 10/244 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R  +  +        GSS   +G+ + I +V  G +E     
Sbjct: 5   EIYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVA-GPQEPSSR- 62

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S   T++    +  N    A  E S+      RR +       R     L        +
Sbjct: 63  -SQVNTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTS 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + +     + DG    A + G +LAL+DAG+ +   V+G+++GL     D   L D++  
Sbjct: 122 IDVQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLY----DTTPLLDLNSL 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +E+ +  +     G    ++ + ++ K+       ++            ++++  +   +
Sbjct: 178 EENAMSSVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKHGK 237

Query: 542 SRLQ 545
           +R++
Sbjct: 238 TRVE 241



 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 74/211 (35%), Gaps = 11/211 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G   ++  V   +              L+V      +A  +      + E 
Sbjct: 36  ADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNER 95

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           R  E +  + R  ++++  +     +    V ++ +Q D      ++     + AL+ +G
Sbjct: 96  RTLEWQASLVRTFEKNL--MLHLYPRTSIDVQVHALQLDGGILGAML--NGITLALIDAG 151

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
           +     V G  V   +   +L+    E+    S+ +   G  + + ++ +E   +  D +
Sbjct: 152 IAMYDFVSGVSVGLYDTTPLLDLNSLEENAMSSVTIGTIGKSEKLSLLMVEDK-VPLDRL 210

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
              +  G      + + + K  +   K  + 
Sbjct: 211 ESVMAIGIAGTHRIRDLMDKELRKHGKTRVE 241


>gi|269214552|ref|ZP_06158646.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
 gi|269209601|gb|EEZ76056.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
          Length = 326

 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMVNSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGA-IIKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268


>gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
 gi|169803898|gb|ACA82516.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
          Length = 396

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D    +I+ S  A     R       D      + +G V +V DFGAFV 
Sbjct: 245 DKVNVKILALDTEKGRISLSIKAT---QRGPWDEAADKIAAGSVLEGTVKRVKDFGAFVE 301

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GD V VK+LD      +I LSMK +++   + 
Sbjct: 302 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPQRE 361



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +  +     V ++ +G V ++ DFGAFV   G  D
Sbjct: 163 IEIDAANARLILSRKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDL-GGVD 221

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +RV   +DV+ +GD V VK+L  D ++G+I LS+K   +     
Sbjct: 222 GLVHVSEISHDRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRGPWDE 275


>gi|269863281|ref|XP_002651164.1| polyribonucleotide nucleotidyltransferase / polynucleotide
           adenylyltransferase [Enterocytozoon bieneusi H348]
 gi|220065021|gb|EED42891.1| polyribonucleotide nucleotidyltransferase / polynucleotide
           adenylyltransferase [Enterocytozoon bieneusi H348]
          Length = 100

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 58/91 (63%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               EA  + +  IT    + KIY G+V  ++DFGAFV+    +D L+HIS LS  RV K
Sbjct: 2   KEAAEAGLQRVLGITAEARLGKIYVGKVEGIVDFGAFVNILPGKDVLIHISMLSDARVEK 61

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            +D++KEG  V V +LD D+RG+IKLS+K V
Sbjct: 62  VTDILKEGQEVEVLVLDVDNRGRIKLSIKDV 92


>gi|307169908|gb|EFN62417.1| ATP-dependent RNA helicase DHX8 [Camponotus floridanus]
          Length = 1204

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 5/93 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVK 665
              ++  PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RVA  SDVV 
Sbjct: 241 EEMLSVEPEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVS 300

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G  V VK+L    + K+ LSMK VDQ TGK +
Sbjct: 301 RGQKVLVKVLSVGGQ-KVSLSMKDVDQETGKDL 332


>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 482

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVSVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             + VK++D D +R +I LS+K  D++
Sbjct: 340 QEIMVKVIDIDLERRRISLSLKQADED 366


>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
 gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
          Length = 263

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R    + G +    GS+    G+T+ IV V  G RE ++   ++  + + 
Sbjct: 41  RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSV-FGPRESKK---AMMYSDKG 96

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
               + ++   AT     +            +  +A+   +        T+ + + + ES
Sbjct: 97  KLNCNVSYTTFATT----VHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLES 152

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  +SLAL DAG+ +   VAG+++  +       ++ D + +E+        
Sbjct: 153 GGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRN----LIIDPTLEEESFQDGSLM 208

Query: 493 VAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +    S   IT + +    G  S   +  A+Q        +   +   L E+
Sbjct: 209 ITCMPSHYEITQLTIT---GEWSTANLNEAMQLCLDACSKLAKILRSCLKEA 257



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 16/206 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G T V+ +V   R  K      D   L  N    T+A      G   +E  
Sbjct: 63  AAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNCNVSYTTFATTVHGQGSDNKE-- 120

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P V+S   AS AL  +G+
Sbjct: 121 ---FSTMLHKALEGAV--MLETFPKTTVDVFALVLESGGSDLPVVISC--ASLALADAGI 173

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V G  V  +    +++P L+E+    GSL +         +       + S   +
Sbjct: 174 MMYDLVAGVSVSCLGRNLIIDPTLEEESFQDGSL-MITCMPSHYEITQLTITGEWSTANL 232

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCA 226
            +A+    + C  + + +    K  A
Sbjct: 233 NEAMQLCLDACSKLAKILRSCLKEAA 258


>gi|309379231|emb|CBX22188.1| 30S ribosomal protein S1 [Neisseria lactamica Y92-1009]
          Length = 326

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMVNSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGA-IIKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268


>gi|110834606|ref|YP_693465.1| 30S ribosomal protein S1 [Alcanivorax borkumensis SK2]
 gi|110647717|emb|CAL17193.1| 30S ribosomal protein S1 [Alcanivorax borkumensis SK2]
          Length = 560

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 460 AGIAMGLVKDGDDFIILS-DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           AG+    +   ++F+  + ++   E     +         G T +  +          + 
Sbjct: 40  AGLKSEGIIAREEFLNEAGELEIVEGDEVDVAVDAIDDGMGFTRLSREKAKRAEVWGELE 99

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            A  + +  +  I  ++    +     +  F P      +    +R+V  + GK +   V
Sbjct: 100 KAFDEDEIVKGMISGKVKGGFTVDIGPIRAFLPGSL---VDIRPVRDVAHLEGKELDFKV 156

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            +   K N      V ++  ++ E E + E  + +  + E  ++ KG V  + D+GAFV 
Sbjct: 157 IKLDPKRN-----NVVVSRRAVMEAEHSAEREQLLESLQEGMEV-KGIVKNLTDYGAFVD 210

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ ++ +R+   S++V+ G  + VK+L FD ++ ++ L +K + ++    
Sbjct: 211 L-GGIDGLLHITDMAWKRIKHPSEIVEVGQEIDVKVLKFDREKMRVSLGLKQLGEDPWHD 269

Query: 698 IV 699
           IV
Sbjct: 270 IV 271



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I          K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 265 DPWHDIVGKYPEGTRVKAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVEI 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D DR +I L +K    N  
Sbjct: 325 GDEVEVMILDIDEDRRRISLGIKQCQSNPW 354



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I KG V  V    A V      +  +  S++S +RV   ++V+K GD V  K+ + D +
Sbjct: 452 TIVKGVVKAVDAKAAIVELAENVEATLRASEISRDRVNDATEVLKVGDEVEAKITNVDRK 511

Query: 681 GKI-KLSMKVVDQNTGKPIV 699
            ++  LS+K  DQ   +  +
Sbjct: 512 NRVLSLSIKSKDQADEREAI 531



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G  +  ++      ++ID+D           +         +  +  
Sbjct: 316 IHPSKVVEI----GDEVEVMI------LDIDEDRRRISLGIKQCQSN----PWDAFEEKY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK---EGDTVWVKL 674
           +  +   G++  + DFG F+   G  DGLVH+S +S E   +  D V+   +GD +   +
Sbjct: 362 QKGERISGKIKSITDFGIFIGLEGGIDGLVHLSDISWE--EQGEDAVRNFNKGDELETVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K +  + 
Sbjct: 420 LSIDAERERISLGIKQLTDDP 440


>gi|256851010|ref|ZP_05556399.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
 gi|260661222|ref|ZP_05862136.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
 gi|282932037|ref|ZP_06337495.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
 gi|256616072|gb|EEU21260.1| ribosomal protein S1 [Lactobacillus jensenii 27-2-CHN]
 gi|260548159|gb|EEX24135.1| ribosomal protein S1 [Lactobacillus jensenii 115-3-CHN]
 gi|281303804|gb|EFA95948.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
          Length = 402

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     V++   +     + IDDD      S    E           T      ++ +G+
Sbjct: 234 IDKPSDVLKTGQDVKVKVIGIDDDRHRISLSIKQTEPS----PFEQATSELSEGEVVEGE 289

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  +  FGAFV       GLVH+S++S +RV K SDV+K G+TV VK+L  + D  +I L
Sbjct: 290 VKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPDEKRISL 349

Query: 686 SMKVVDQ 692
           S+K    
Sbjct: 350 SIKQAQP 356



 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    GK I+  + +      ID +    I S      E   E   ++    
Sbjct: 142 ISNHFVSDLKPYIGKTIKVKITE------IDPNKNRLILSHKELIEEEREEAFETVASQL 195

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               I +G+V ++ +FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++  
Sbjct: 196 VAGDIVEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGI 254

Query: 678 -DDRGKIKLSMKVVDQNT 694
            DDR +I LS+K  + + 
Sbjct: 255 DDDRHRISLSIKQTEPSP 272


>gi|315652689|ref|ZP_07905664.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485067|gb|EFU75474.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 232

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             +    L +    ++ I   +         ++  F P  ++ +   + +   +G   +V
Sbjct: 31  WEVFEKMLAEKTVSKVKITEVVKGGCIAFLEEVRGFIPASQLSSQYVENLDEYLGKSLEV 90

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I          +  +      + S    E E A++  ++  D  +V  + +G+V  + D+
Sbjct: 91  I---------VITAEPAKKKLVLSHRAIEKEEAKKERQAKFDSVKVGDVLEGKVDSIKDY 141

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GAF+       GL+H+SQ+S +RV   + V+KEG++V VK+    D GKI LS K +++N
Sbjct: 142 GAFIDLGDGISGLLHVSQISNQRVKNPAAVLKEGESVKVKVTGIKD-GKISLSKKALEEN 200

Query: 694 TGK 696
             +
Sbjct: 201 AEQ 203


>gi|78048052|ref|YP_364227.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036482|emb|CAJ24173.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 561

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +     +  + +  AL++ +     I  ++    +    
Sbjct: 67  DQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKGGFTVDIK 126

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P      + G          E     + +D      + S       
Sbjct: 127 DVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVES 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 178 EHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVV 236

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 237 NVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +    P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
            N    GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KNDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNYKKGDTLEAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 444 QYMASNPKGSKV-EGVVREVDAKGATIDLADGIEGYVAARDIANERVDDATQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVD 691
             K +  D +G+ ++LS+K  D
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKD 524


>gi|325915995|ref|ZP_08178288.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
 gi|325537805|gb|EGD09508.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
          Length = 562

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +     +  + +  AL++ +     I  ++    +    
Sbjct: 67  DQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKGGFTVDIK 126

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P      + G          E     + +D      + S       
Sbjct: 127 DVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVES 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 178 EHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVV 236

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 237 NVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +    P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
            N    GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KNDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNYKKGDTLEAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 444 QYMASNPKGSKV-EGVVREVDAKGATIDLADGIEGYVAARDIANERVDDATQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVD 691
             K +  D +G+ ++LS++  D
Sbjct: 503 EAKFVGMDRKGRTLQLSIRAKD 524


>gi|166712378|ref|ZP_02243585.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 561

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +     +  + +  AL++ +     I  ++    +    
Sbjct: 67  DQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKGGFTVDIK 126

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P      + G          E     + +D      + S       
Sbjct: 127 DVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVES 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 178 EHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVV 236

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 237 NVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +    P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
            N    GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KNDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNYKKGDTLEAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 444 QYMASNPKGSKV-EGVVREVDAKGATIDLADGIEGYVASRDIANERVDDATQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVD 691
             K +  D +G+ ++LS+K  D
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKD 524


>gi|170593781|ref|XP_001901642.1| ATP-dependent helicase DHX8 [Brugia malayi]
 gi|158590586|gb|EDP29201.1| ATP-dependent helicase DHX8, putative [Brugia malayi]
          Length = 1193

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 4/85 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           P V  IY G+V  + +FGAFV   G R   +GL+HISQ+  +R++  SDV+K    V VK
Sbjct: 227 PVVGHIYSGRVTSIQNFGAFVQLEGLRQRFEGLLHISQIRQDRISAVSDVLKRNQKVKVK 286

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++ F + GKI LSMK VDQ TG+ +
Sbjct: 287 VIKF-ELGKIGLSMKEVDQETGEDL 310


>gi|21243033|ref|NP_642615.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|289665787|ref|ZP_06487368.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289671206|ref|ZP_06492281.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|294624737|ref|ZP_06703403.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294664331|ref|ZP_06729696.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325925941|ref|ZP_08187309.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
 gi|21108543|gb|AAM37151.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|292600971|gb|EFF45042.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605897|gb|EFF49183.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325543664|gb|EGD15079.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
          Length = 561

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +     +  + +  AL++ +     I  ++    +    
Sbjct: 67  DQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKGGFTVDIK 126

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P      + G          E     + +D      + S       
Sbjct: 127 DVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVES 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 178 EHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVV 236

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 237 NVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +    P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
            N    GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KNDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNYKKGDTLEAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 444 QYMASNPKGSKV-EGVVREVDAKGATIDLADGIEGYVAARDIANERVDDATQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVD 691
             K +  D +G+ ++LS+K  D
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKD 524


>gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
 gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
          Length = 491

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      E  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKHRNNVVLSRRAYLEETQSAVRSDFLHQLEKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVEVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V VK++D D +R +I LS+K  D++
Sbjct: 340 QEVMVKVIDIDLERRRISLSLKQADED 366



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVTGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIDPDEVVQIGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLLLSKKRAQ 106


>gi|168186332|ref|ZP_02620967.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169295859|gb|EDS77992.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 634

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 102/250 (40%), Gaps = 20/250 (8%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           D  +P+ +             D+ I + D+    D +      +   D  +   +++++ 
Sbjct: 325 DGIIPLKEA----------TRDEEITMKDLFNIGDEVTSKVISLKNNDDCVVLSKIEIER 374

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
               + I   A        ++I   +   +      +  F P   +     + +   IG 
Sbjct: 375 EEAFKEI-EEAFNNKTLLTIYIKESVKGGIIGRYKGVRIFVPASHVELFHVEDLSVYIGQ 433

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
              V   I+E       ++  GT  +AS      +   +   +  ++ + + I +G+V +
Sbjct: 434 EMNV--NIIEFK-----VNRKGTKIVASRREFLQKEQTKKEEASWEILKKDSIVEGEVKR 486

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  FGAFV      DGL+H+S++S  RV K  DV+  G+ V V +L+ D +  K+ LS+K
Sbjct: 487 LTKFGAFVDV-NGIDGLLHVSEISWGRVEKPEDVLSVGEKVKVYILNVDKENKKLSLSIK 545

Query: 689 VVDQNTGKPI 698
            + ++    +
Sbjct: 546 KLTEDPWTNV 555



 Score = 85.3 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 45/263 (17%)

Query: 453 VPISKPVAGIAMGLVKDGDDFII--------LSDIS---GDEDHLGHMDFKVAGTDSGIT 501
           + I + V G  +G  K    F+         + D+S   G E ++  ++FKV    + I 
Sbjct: 393 IYIKESVKGGIIGRYKGVRIFVPASHVELFHVEDLSVYIGQEMNVNIIEFKVNRKGTKIV 452

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-- 559
           A +            +     + +     IL + S V  E   +L +F   V++  I   
Sbjct: 453 ASR---------REFLQKEQTKKEEASWEILKKDSIVEGE-VKRLTKFGAFVDVNGIDGL 502

Query: 560 ----------PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
                      ++  +V+ +G KV   I+          D    K++ S     E   + 
Sbjct: 503 LHVSEISWGRVEKPEDVLSVGEKVKVYILNV--------DKENKKLSLSIKKLTE---DP 551

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
             ++ +   V  I  G+VV+  DFGAFV      DGLVH+S++S +R+ K SDV++  + 
Sbjct: 552 WTNVEEKYPVGSIVLGKVVRFADFGAFVQLEPGIDGLVHVSEISYKRINKPSDVLEINEE 611

Query: 670 VWVKLLDFD-DRGKIKLSMKVVD 691
           V  K+++ + +  ++ LS+K  +
Sbjct: 612 VKAKIINVNKETKRLSLSIKETE 634



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +  +K++ ++ +E       +        V    KGQV+ + +  AFV+    +DG+
Sbjct: 268 IIKEAILKMSENNNSEFNEQLAYMEQNDIQIAVGDTIKGQVISLNEKEAFVNIGYKKDGI 327

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + + + + +      D+   GD V  K++   + 
Sbjct: 328 IPLKEATRDEEITMKDLFNIGDEVTSKVISLKNN 361


>gi|162420786|ref|YP_001606429.1| 30S ribosomal protein S1 [Yersinia pestis Angola]
 gi|162353601|gb|ABX87549.1| ribosomal protein S1 [Yersinia pestis Angola]
          Length = 557

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V   G  +G +   + + +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELAGGVEGYLRAFEATRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKNDCV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|307545306|ref|YP_003897785.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
 gi|307217330|emb|CBV42600.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
          Length = 559

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 93/215 (43%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+  +      G T +  +      +  ++  A ++ +  +  I  ++    +    
Sbjct: 66  DEVHVALEAVEDGFGETRLSREKAKRAEAWKVLEAAFEKEEIVKGVINGKVKGGFTVDVD 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 SIRAFLPGSL---VDVRPVRDTTHLENKELDFKVIKLDPKRN-----NVVVSRRAVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  +I  G V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLATLQEGQQII-GIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD V VK+L FD +R ++ L +K + ++    I
Sbjct: 236 AVGDEVNVKVLKFDRERNRVSLGLKQLGEDPWVNI 270



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+VV+V    A V        ++  S++S +RV    +V+ EGD+V  +++  D + 
Sbjct: 453 IVTGRVVEVDAKEAHVELATDVVAVLKASEISADRVEDARNVLNEGDSVEARIVGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  DQ   +
Sbjct: 513 RQINLSVKAKDQEDTR 528



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKE 666
              +            G +  + DFG F+   G  DGLVH+S +S     +   V   K+
Sbjct: 353 PWETFNAQYNKGDRVSGTIKSITDFGIFIGLEGGIDGLVHLSDISWTEGGE-EAVRQFKK 411

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD     +L  D +R +I L +K +D + 
Sbjct: 412 GDEAEAVILSIDPERERISLGIKQLDTDP 440



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTS-DVVKEGDTVWVKL 674
           PE  K++   V  + D+G F       +GLVH+S++    +    S  V    D   + L
Sbjct: 275 PEGTKVH-ATVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDDVDVMVL 333

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
              ++R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGIKQCTANPWE 355


>gi|188534269|ref|YP_001908066.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
 gi|188029311|emb|CAO97188.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
          Length = 557

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYISLNKKGAIVNGKVTAVDAKGATVELGDGVEGYLRASEASLDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|153854638|ref|ZP_01995888.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814]
 gi|149752742|gb|EDM62673.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814]
          Length = 269

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D+     + S+     E AR+   +     +V  I  G V  + ++GAFV       
Sbjct: 131 IDVDEANNRLVLSAREILQEKARKEREAKIAAVKVGSIVTGTVESLQNYGAFVDLGDGLS 190

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVHISQ+S +R+   +DV+  GD V VK++   D GKI LSMK +
Sbjct: 191 GLVHISQISLKRIKSPADVLNVGDEVTVKIIGIKD-GKISLSMKAL 235



 Score = 37.6 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
            +    +  + L E          +    E   +   +V  +++ GA     G R G + 
Sbjct: 48  QNEGTPVTMADLEEHFDDANPWNVVKSYMEKGTVLPVKVEGIVNGGAIAMVEGLR-GFIP 106

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            S+LS   +      + +   + VK++D D+   ++ LS + + Q   +
Sbjct: 107 ASRLSLSYIEDLETYLLK--DIEVKVIDVDEANNRLVLSAREILQEKAR 153


>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105]
 gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105]
          Length = 493

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  ++ +G +  +++FG
Sbjct: 164 YIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVRETFLSQLKKGQVREGTISSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I +G+V K++ FG FV      +GL+HIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVRGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           +T++VK++D D DR +I LS+K  +
Sbjct: 342 ETIFVKVIDVDLDRRRISLSLKQAN 366



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV I+D GTV     ++                 +   + +G VVK+      +     
Sbjct: 9   EKVAINDIGTVDDFIKAVDSTIK----------NFDDGDLVEGTVVKIDHDEVLLDIGYK 58

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
            +G++   +LS ++     DVV+ GDT+   ++   D  G++ LS K   
Sbjct: 59  TEGVIPSKELSIKKDVTPEDVVEVGDTIEALVVTKEDKEGRLILSKKRAQ 108


>gi|238757619|ref|ZP_04618803.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
 gi|238704124|gb|EEP96657.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
          Length = 557

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V   G  +G +  S+ + +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELAGGVEGYLRASEATRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAI 531



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVRDYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|229589170|ref|YP_002871289.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
 gi|229361036|emb|CAY47898.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
          Length = 563

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 98/235 (41%), Gaps = 11/235 (4%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            L+     +    D++ +     H+         G T +  +         ++  A    
Sbjct: 48  ALIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAE 107

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +  +  I  ++    +     +  F P      +    +R+   + GK +   V +   K
Sbjct: 108 EVVKGVINGKVKGGFTVDVNGIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQK 164

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            N      V ++  S+ E E + E    +  + E  ++ KG V  + D+GAFV   G  D
Sbjct: 165 RN-----NVVVSRRSVLEAENSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVD 217

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL+HI+ ++ +R+   S++V  GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 218 GLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 272



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 161 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 220

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 221 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 280

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 281 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 340

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 341 RRRISLGIKQCKSNPWED 358



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I KG V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 441 DPFSEYVQDNDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             V  K++  D + + I+LS+K  D    K  +
Sbjct: 501 QEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAI 533



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 318 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 364 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 422

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 423 SVDPERERISLGIKQLESDP 442


>gi|297205893|ref|ZP_06923288.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
 gi|297149019|gb|EFH29317.1| 30S ribosomal protein S1 [Lactobacillus jensenii JV-V16]
          Length = 402

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     V++   +     + IDDD      S    E           T      ++ +G+
Sbjct: 234 IDKPSDVLKTGQDVKVKVIGIDDDRHRISLSIKQTEPS----PFEQATSELSEGEVVEGE 289

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  +  FGAFV       GLVH+S++S +RV K SDV+K G+TV VK+L  + D  +I L
Sbjct: 290 VKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLSINPDEKRISL 349

Query: 686 SMKVVDQ 692
           S+K    
Sbjct: 350 SIKQAQP 356



 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    GK I+  + +      ID +    I S      E   E   ++    
Sbjct: 142 ISNHFVSDLKPYIGKSIKVKITE------IDPNKNRLIISHKELIEEEREEAFETVASQL 195

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               I +G+V ++ +FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++  
Sbjct: 196 VAGDIVEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGI 254

Query: 678 -DDRGKIKLSMKVVDQNT 694
            DDR +I LS+K  + + 
Sbjct: 255 DDDRHRISLSIKQTEPSP 272


>gi|21231633|ref|NP_637550.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768245|ref|YP_243007.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991381|ref|YP_001903391.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113326|gb|AAM41474.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573577|gb|AAY48987.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733141|emb|CAP51339.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris]
          Length = 559

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +     +  + +  AL++ +     I  ++    +    
Sbjct: 67  DQVKVALDSIENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKGGFTVDIK 126

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P      + G          E     + +D      + S       
Sbjct: 127 DVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVES 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 178 EHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVV 236

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 237 NVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +    P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
            N    GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KNDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNYKKGDTLEAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 444 QYMASNPKGSKV-EGVVREVDAKGATIDLADGIEGYVAARDIANERVDDATQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             K +  D +G+ ++LS+K  D    + ++
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKDDAEMREVL 532


>gi|313668440|ref|YP_004048724.1| 30S ribosomal protein S1 [Neisseria lactamica ST-640]
 gi|313005902|emb|CBN87358.1| 30S ribosomal protein S1 [Neisseria lactamica 020-06]
          Length = 595

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 49  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 108

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 109 SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMVNSIRAFLPG 168

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 169 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 220

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 221 LENLQEGA-IIKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 278

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 279 KVLKFDQEKQRVSLGMKQLGEDPW 302



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 300 DPWNGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 359

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 360 GDEVEVMILEIDENRRRISLGMKQCQANPWEE 391



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID++               A        +  
Sbjct: 351 VHPSK---VVQLGDEVEVMILE-------IDENRRRISLGMKQC---QANPWEEFAANHN 397

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 398 KGDKI-SGAVKSITDFGIFVGLPGGIDGLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVV 454

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 455 LAIDVEKERISLGIKQLEGDP 475



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   S  +KEGD V   +L  D + 
Sbjct: 488 LVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLSTKLKEGDEVEAVVLTVDRKN 547

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 548 RSIKLSVKAKDAKESRE 564


>gi|311693107|gb|ADP95980.1| transcriptional accessory protein [marine bacterium HP15]
          Length = 779

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 559 PPDQIRNVIG-----MGGKVIRGIVEQTG-AKV-NIDDDGTVKIASSSLAEIEAAREMIR 611
              ++ ++IG      G      + EQ G   + +I  +              A+ E   
Sbjct: 583 NNREVGDIIGDSSFLRGLNPQDYVTEQFGLPTIKDIISELEKPGRDPRPEFRFASFEEGV 642

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD V 
Sbjct: 643 ETLSDLKPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISALSHTFVKDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ----NTGKPIV 699
           VK++D D  R +I L+M++ DQ    N GKP+ 
Sbjct: 703 VKVMDVDIPRKRIALTMRMDDQPGEKNEGKPMA 735


>gi|123441852|ref|YP_001005835.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238749770|ref|ZP_04611275.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
 gi|238763339|ref|ZP_04624303.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
 gi|238784530|ref|ZP_04628538.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
 gi|238789317|ref|ZP_04633104.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
 gi|238792399|ref|ZP_04636033.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
 gi|238795851|ref|ZP_04639364.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
 gi|332162206|ref|YP_004298783.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122088813|emb|CAL11619.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238698438|gb|EEP91191.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
 gi|238712425|gb|EEQ04638.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
 gi|238714593|gb|EEQ06597.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
 gi|238720314|gb|EEQ12117.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
 gi|238722649|gb|EEQ14302.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
 gi|238728325|gb|EEQ19845.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
 gi|318606262|emb|CBY27760.1| SSU ribosomal protein S1p [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666436|gb|ADZ43080.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862894|emb|CBX73031.1| 30S ribosomal protein S1 [Yersinia enterocolitica W22703]
          Length = 557

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V   G  +G +  S+ + +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELAGGVEGYLRASEATRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|300176908|emb|CBK25477.2| unnamed protein product [Blastocystis hominis]
          Length = 1131

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVAKTSDVVKEGDT 669
            T    + +IY G+V  +MD+GAF+        +DGL HIS ++ ER+   SDV++    
Sbjct: 191 PTREVVMGEIYDGEVRSIMDYGAFIELLDVSPRQDGLCHISCIAHERIRHPSDVLRVNQR 250

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V VK+       KI LSMK +DQ TG+ +
Sbjct: 251 VKVKVTQI-KGTKIGLSMKDIDQQTGEDL 278


>gi|242041913|ref|XP_002468351.1| hypothetical protein SORBIDRAFT_01g044300 [Sorghum bicolor]
 gi|241922205|gb|EER95349.1| hypothetical protein SORBIDRAFT_01g044300 [Sorghum bicolor]
          Length = 1242

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 4/87 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            PE+ ++Y+G+V +VMD G FV      G  +GLVH+SQ+++ RVA   +VVK    V+V
Sbjct: 282 EPELYEVYRGRVTRVMDTGCFVRLEDVRGGHEGLVHVSQMASRRVANAKEVVKRDQEVYV 341

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++    + K+ LSM+ VDQ+TGK ++
Sbjct: 342 KVVSVKGQ-KLSLSMRDVDQDTGKDLL 367


>gi|325912014|ref|ZP_08174416.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D]
 gi|325476199|gb|EGC79363.1| putative ribosomal protein S1 [Lactobacillus iners UPII 143-D]
          Length = 395

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     V++   E     + IDDD      S                T       I  G+
Sbjct: 234 IDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPS----PFEEATSELHEGDIIDGE 289

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
           V  +  FGAF+       GLVH+S++S +RV K SD +K G TV VK+L  D    +I L
Sbjct: 290 VKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISL 349

Query: 686 SMKVVDQN 693
           S+K  + +
Sbjct: 350 SIKQTESD 357



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++   K+  ID +    I S      E   E   S+ +   V    +G+V ++  FG
Sbjct: 153 YIGKKMNLKITEIDPNKNRLILSRKDLIEEEREEAFESVANQLVVGDTIEGKVSRLTGFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AF++  G  DGLVHIS++S + + K SDV+K G  V VK++   DDR +I LS+K    +
Sbjct: 213 AFINV-GGVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|253681777|ref|ZP_04862574.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum D str. 1873]
 gi|253561489|gb|EES90941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum D str. 1873]
          Length = 633

 Score = 99.2 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 28/254 (11%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDI--SGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           D  +P+ +             D+ + + D+   GDE     +  K   +D  I   ++++
Sbjct: 324 DGIIPLKEA----------TRDENVSMKDLFNVGDEIEAKVISLK--NSDDCIVLSKIEI 371

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           +     + I   A     +  + I   ++  +      +  F P   +     + + N I
Sbjct: 372 EREEAFKEI-ENAFNNKSQITISIKESVNGGIIGRYKGVRVFVPASHVELFHVNDLSNYI 430

Query: 568 GM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           G     K+I   V +   K+         +AS     I+A  E      +  + +++ +G
Sbjct: 431 GQDMQVKIIEFKVNKRVTKI---------VASRRELLIKAQAEKEEEAWNTLKKDEVIEG 481

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           ++ ++  FGAFV      DGL+H+S++S  RV K  DV+K G+ V V +LD D +  K+ 
Sbjct: 482 EIRRLTSFGAFVDV-NGIDGLLHVSEISWGRVEKPEDVLKVGEKVKVFILDIDKENKKLS 540

Query: 685 LSMKVVDQNTGKPI 698
           LS+K +  +    I
Sbjct: 541 LSIKKLTDDPWTNI 554



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 31/256 (12%)

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDIS----GDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           + I + V G  +G  K    F+  S +      D  +    D +V   +  +      + 
Sbjct: 392 ISIKESVNGGIIGRYKGVRVFVPASHVELFHVNDLSNYIGQDMQVKIIEFKVNKRVTKIV 451

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP--------- 559
                  +++ A  + +    + L +   +  E R  L  F   V++  I          
Sbjct: 452 ASR--RELLIKAQAEKEEEAWNTLKKDEVIEGEIRR-LTSFGAFVDVNGIDGLLHVSEIS 508

Query: 560 ---PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
               ++  +V+ +G KV   I       ++ID +      S          +   +I + 
Sbjct: 509 WGRVEKPEDVLKVGEKVKVFI-------LDIDKENKKLSLSIKKLTD----DPWTNIEEK 557

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             +  I  G+VV+  DFGAFV      DGLVH+S++S +R+ K SDV+K  + V  K+L+
Sbjct: 558 YPIGSIVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPSDVLKLNEEVKAKILN 617

Query: 677 FDDRG-KIKLSMKVVD 691
            +  G ++ LS+K  +
Sbjct: 618 VNKDGKRLSLSIKEAE 633



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 41/93 (44%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +  +K++  + +E+      +        V    KGQ++ + +  AF++    +DG+
Sbjct: 267 IIKEAILKMSEYTNSELNEQLAYMEQNDVKIAVGDTVKGQIISLNEKEAFINIGHKKDGI 326

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + + + + +      D+   GD +  K++   +
Sbjct: 327 IPLKEATRDENVSMKDLFNVGDEIEAKVISLKN 359


>gi|302389719|ref|YP_003825540.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200347|gb|ADL07917.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
           oceani DSM 16646]
          Length = 672

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A ++ +     ++  +   L  +   +  F P           +   +G   K+   
Sbjct: 378 LEEAFEKKQTVEGRVIESIKGGLLVNVKGVRGFIPASHADLKYVADLSVYVGKDLKL--- 434

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                   + +D D    + S  L   E   ++   I +  +  ++ +G V K+ DFGAF
Sbjct: 435 ------KVIELDRDKKRVVLSHKLFLQEEKEKLKEEIWEKVKEGQVIRGTVRKLTDFGAF 488

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HIS LS +RV   S+V+ E   V VK+L  D +RG+I L +K +  +  
Sbjct: 489 VDI-GGYDGLIHISDLSWQRVNHPSEVLSENQEVDVKVLKVDKERGRISLGLKQLTPDPW 547

Query: 696 KPI 698
           + I
Sbjct: 548 ENI 550



 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +I     + ++ +G+VVK+ +FGAFV      +GLVH+SQ+S +RVA   DV+KEG
Sbjct: 545 DPWENIEQKYAIGQVVQGKVVKLTNFGAFVELEPGVEGLVHVSQISKKRVATPKDVLKEG 604

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           +T+ VK+LD   +  +I LS+K        P
Sbjct: 605 ETIKVKILDIKPEEKRISLSIKQALNEEQPP 635



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEV------NKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +K   S + EI    E  +      +        KI +G VVKV D    V+     DG+
Sbjct: 265 IKEVISKMEEISREMENQQGEVAYEDGISELAEGKIVEGTVVKVSDKEVLVNVGHKSDGI 324

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           + +++LS    +  S++VK GD + V++L   D+ G + LS K  D
Sbjct: 325 IPLNELSNLPFSSPSEIVKTGDRIKVQILKLEDNEGNLILSKKRAD 370



 Score = 37.6 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 9/203 (4%)

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE----SRLQLGEF 549
           A T   I    +  K+  IS  +     + A    +  L E   V       S  ++   
Sbjct: 258 ASTPDWIIKEVIS-KMEEISREMENQQGEVAYEDGISELAEGKIVEGTVVKVSDKEVLVN 316

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
                   IP +++ N+       I    ++   ++   +D    +  S         E 
Sbjct: 317 VGHKSDGIIPLNELSNLPFSSPSEIVKTGDRIKVQILKLEDNEGNLILSKKRADV--IEA 374

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            R + +  E  +  +G+V++ +  G  V+  G R G +  S    + VA  S  V +   
Sbjct: 375 WRYLEEAFEKKQTVEGRVIESIKGGLLVNVKGVR-GFIPASHADLKYVADLSVYVGKDLK 433

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQ 692
           + V  LD D + ++ LS K+  Q
Sbjct: 434 LKVIELDRDKK-RVVLSHKLFLQ 455


>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
          Length = 238

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           ++ R DGR+   +R  S     L R HGS+ + +GDT  ++    G +       +  G 
Sbjct: 2   EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDT-IVLAAVYGPK-----PGTRKGE 55

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 +   + P         G   ++E  +    +R +  +   T     T  ++ ++
Sbjct: 56  NPEKASIEVVWKP-------MTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
             +DGS     +     AL+ AG+P+      I  G+++DG+   ++ D +  E+
Sbjct: 109 VGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE---VILDTNKAEE 160



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 26/153 (16%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G+T+VLA V   +      +  +   + V ++  T  +GK           
Sbjct: 27  AHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGK----------- 75

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             E E  ++  + R+++   L +      T VI+ V+ +D    P   ++ A  AAL+ +
Sbjct: 76  -QEKEYEMT--LKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC--AINACCAALVFA 130

Query: 142 GLPFEGPVVGAQVD---YINGQYVLNPRLDEDQ 171
           G+P +       +      +G+ +L+    E+Q
Sbjct: 131 GIPLKHL--AVAIGCGVLEDGEVILDTNKAEEQ 161


>gi|259908919|ref|YP_002649275.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
 gi|224964541|emb|CAX56051.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
 gi|283478915|emb|CAY74831.1| 30S ribosomal protein S1 [Erwinia pyrifoliae DSM 12163]
 gi|310767179|gb|ADP12129.1| 30S ribosomal protein S1 [Erwinia sp. Ejp617]
          Length = 557

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYISLNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASLDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|300855310|ref|YP_003780294.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300435425|gb|ADK15192.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 637

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 30/250 (12%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS-----EN 515
            +  GLV +     +    S  E +      +    +  +T ++   +  G        +
Sbjct: 399 AVNGGLVANYKGARVFIPASHVELYHVDDLSQYVDKELDVTIIEFKEEKKGTRIVASRRD 458

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP------------PDQI 563
           ++ M  ++ +    ++L + + V  E R  L +F   V++  +               + 
Sbjct: 459 LLRMEREKMEEQTWNVLEKDTVVDGEVRR-LTDFGAFVDVQGVDGLLHVSELSWGRVGKP 517

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            +V+ +G K+   I       ++ID +      S          +   ++     V  + 
Sbjct: 518 SDVLKIGDKIKVYI-------LDIDREKKKLSLSLKKLM----EDPWINVDIKYPVGNVV 566

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G+VV+  +FGAFV      D LVHISQ+S +R+ K  DV+K G  +  K+L+ + D  K
Sbjct: 567 LGKVVRFANFGAFVELEPGVDALVHISQISHKRIDKPEDVLKIGQEIKAKILEVNKDSEK 626

Query: 683 IKLSMKVVDQ 692
           I LS+K VD+
Sbjct: 627 IALSIKEVDE 636



 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +  +K++     E+      +        + +  KG V+ V     F++     +G+
Sbjct: 269 IIKEAILKMSDDKNLELNEQLSYMDKNDTQIILGEKIKGTVISVNQKEVFLNIGYKSEGV 328

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           +   +++        +++  GD ++VK++   ++ G + LS   +++   
Sbjct: 329 LPKREITKNESDNLEELIHCGDELYVKVIRRQNEDGYVVLSKIELERENA 378


>gi|224282840|ref|ZP_03646162.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1P RpsA [Bifidobacterium bifidum PRL2010]
 gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
 gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
          Length = 490

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|22126658|ref|NP_670081.1| 30S ribosomal protein S1 [Yersinia pestis KIM 10]
 gi|45441028|ref|NP_992567.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108806680|ref|YP_650596.1| 30S ribosomal protein S1 [Yersinia pestis Antiqua]
 gi|108812746|ref|YP_648513.1| 30S ribosomal protein S1 [Yersinia pestis Nepal516]
 gi|149366649|ref|ZP_01888683.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
 gi|165924533|ref|ZP_02220365.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938978|ref|ZP_02227531.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009737|ref|ZP_02230635.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211469|ref|ZP_02237504.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399783|ref|ZP_02305301.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419527|ref|ZP_02311280.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424191|ref|ZP_02315944.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928540|ref|YP_002346415.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
 gi|229841362|ref|ZP_04461521.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843467|ref|ZP_04463613.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229895840|ref|ZP_04511010.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
 gi|229903154|ref|ZP_04518267.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
 gi|270486949|ref|ZP_06204023.1| ribosomal protein S1 [Yersinia pestis KIM D27]
 gi|294503382|ref|YP_003567444.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
 gi|21959672|gb|AAM86332.1|AE013881_2 30S ribosomal subunit protein S1 [Yersinia pestis KIM 10]
 gi|45435887|gb|AAS61444.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776394|gb|ABG18913.1| SSU ribosomal protein S1P [Yersinia pestis Nepal516]
 gi|108778593|gb|ABG12651.1| SSU ribosomal protein S1P [Yersinia pestis Antiqua]
 gi|115347151|emb|CAL20044.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
 gi|149291023|gb|EDM41098.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
 gi|165913125|gb|EDR31749.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
 gi|165923593|gb|EDR40725.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991133|gb|EDR43434.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207240|gb|EDR51720.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962268|gb|EDR58289.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050491|gb|EDR61899.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057040|gb|EDR66803.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229678924|gb|EEO75027.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
 gi|229689814|gb|EEO81875.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697728|gb|EEO87775.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700763|gb|EEO88792.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
 gi|262361423|gb|ACY58144.1| 30S ribosomal protein S1 [Yersinia pestis D106004]
 gi|262365041|gb|ACY61598.1| 30S ribosomal protein S1 [Yersinia pestis D182038]
 gi|270335453|gb|EFA46230.1| ribosomal protein S1 [Yersinia pestis KIM D27]
 gi|294353841|gb|ADE64182.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
 gi|320015749|gb|ADV99320.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 557

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V   G  +G +   + + +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELAGGVEGYLRAFEATRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|322798596|gb|EFZ20200.1| hypothetical protein SINV_03476 [Solenopsis invicta]
          Length = 1206

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           +    +++  PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RVA  SD
Sbjct: 240 KSAEETLSSEPEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASD 299

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV  G  V VK+L+   + K+ LSMK VDQ TG+ +
Sbjct: 300 VVSRGQKVLVKVLNVGGQ-KVSLSMKDVDQETGRDL 334


>gi|310287294|ref|YP_003938552.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
 gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
          Length = 490

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKSG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|85058971|ref|YP_454673.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
 gi|84779491|dbj|BAE74268.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
          Length = 558

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +  ++  A ++A      I  ++    +     +
Sbjct: 68  VDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVIGVINGKVKGGFTVELNGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E +
Sbjct: 128 RAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 180 AERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   ++       
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAEIHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDSER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLVEDP 440



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G+V  V   GA V   G  +G +  S+ S +RV   + V+  G
Sbjct: 439 DPFNNYLSLNKKGAIVTGKVTAVDVKGATVELAGGVEGYLRASEASRDRVEDATLVLSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + + LS++  D+   K  +
Sbjct: 499 DDVEAKFTGVDRKNRVVSLSVRAKDEADEKEAI 531



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213]
 gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213]
          Length = 491

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           +TV+VK++D D DR +I LS+K  +
Sbjct: 342 ETVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|15598358|ref|NP_251852.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
 gi|116051151|ref|YP_790018.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152988074|ref|YP_001347348.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PA7]
 gi|218890646|ref|YP_002439510.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
 gi|296388354|ref|ZP_06877829.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAb1]
 gi|313108474|ref|ZP_07794478.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
 gi|81540491|sp|Q9HZ71|RS1_PSEAE RecName: Full=30S ribosomal protein S1
 gi|9949278|gb|AAG06550.1|AE004740_3 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
 gi|115586372|gb|ABJ12387.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150963232|gb|ABR85257.1| ribosomal protein S1 [Pseudomonas aeruginosa PA7]
 gi|218770869|emb|CAW26634.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
 gi|310880980|gb|EFQ39574.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
          Length = 559

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +      S  ++  A    +  +  I  ++    +    
Sbjct: 66  DEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I        
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V++LD D+ 
Sbjct: 279 RVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCKSNPWED 356



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + E   I +G V +V   GA +      +G++  S++S +RV    +V+KEG
Sbjct: 439 DPFSNYASLHEKGSIVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           + V  K++  D + + I LS+K  D +  K 
Sbjct: 499 EEVEAKIISIDRKSRVISLSVKSKDVDDEKD 529



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +           +          G +  + DFG F+   G  D
Sbjct: 333 LDIDEERRRISLGIKQCKSN----PWEDFSSQFNKGDRISGTIKSITDFGIFIGLDGGID 388

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   V +   V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 389 GLVHLSDISWNEVGE-EAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP 440


>gi|308186257|ref|YP_003930388.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
 gi|308056767|gb|ADO08939.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYITLNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASLDRIEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 94/255 (36%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|125539090|gb|EAY85485.1| hypothetical protein OsI_06862 [Oryza sativa Indica Group]
          Length = 1240

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            PE+ ++Y+G+V +VMD G FV      G R+GLVHISQ++T RVA   ++VK    V+V
Sbjct: 278 EPELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYV 337

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++    + K+ LSM+ VDQ+TG+ ++
Sbjct: 338 KVVSVKGQ-KLSLSMRDVDQDTGRDLL 363


>gi|48716672|dbj|BAD23339.1| putative RNA helicase [Oryza sativa Japonica Group]
          Length = 1240

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            PE+ ++Y+G+V +VMD G FV      G R+GLVHISQ++T RVA   ++VK    V+V
Sbjct: 278 EPELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYV 337

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++    + K+ LSM+ VDQ+TG+ ++
Sbjct: 338 KVVSVKGQ-KLSLSMRDVDQDTGRDLL 363


>gi|51595757|ref|YP_069948.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
 gi|145599575|ref|YP_001163651.1| 30S ribosomal protein S1 [Yersinia pestis Pestoides F]
 gi|153949259|ref|YP_001401545.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
 gi|170024893|ref|YP_001721398.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
 gi|186894835|ref|YP_001871947.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
 gi|51589039|emb|CAH20657.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
 gi|145211271|gb|ABP40678.1| SSU ribosomal protein S1P [Yersinia pestis Pestoides F]
 gi|152960754|gb|ABS48215.1| ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
 gi|169751427|gb|ACA68945.1| ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
 gi|186697861|gb|ACC88490.1| ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V   G  +G +  S+ + +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELAGGVEGYLRASEATRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|304397071|ref|ZP_07378950.1| ribosomal protein S1 [Pantoea sp. aB]
 gi|304355220|gb|EFM19588.1| ribosomal protein S1 [Pantoea sp. aB]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYITLNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASLDRIEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 94/255 (36%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
           L2-32]
 gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084010|gb|EDN83055.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
           L2-32]
          Length = 490

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|220904477|ref|YP_002479789.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868776|gb|ACL49111.1| RNA binding S1 domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 489

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
            ++  D G V+IA S     +A  +  + +T   E   + +G+VV++  FGAFV      
Sbjct: 258 SISKSDKGQVRIALSRK---QAEGDPWQDVTQRLENGAVVQGKVVRLAPFGAFVEILPGI 314

Query: 644 DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           +GLVHIS+LS  +RV K  ++++ GD V VK+ + + D  +I LS++  + +  + 
Sbjct: 315 EGLVHISELSWTKRVNKPEEILQVGDIVAVKIKEINADSRRISLSLRDAEGDPWQD 370



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +++ G   + S         +E + ++ +   V    +G++ +   FGAF+    A +
Sbjct: 167 IRVENRGRNIVVSRRALLDRERQEQLEALLEKLGVGDTVEGKISRFAPFGAFMELDTAVE 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRG--KIKLSMKVVDQNTGKPI 698
           G++H+S+LS  RV    + V  GDTV  K+L     D+G  +I LS K  + +  + +
Sbjct: 227 GMIHLSELSWSRVGAPDEAVSLGDTVRAKVLSISKSDKGQVRIALSRKQAEGDPWQDV 284


>gi|213692621|ref|YP_002323207.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 491

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EAVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
 gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 491

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           +TV+VK++D D DR +I LS+K  +
Sbjct: 342 ETVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 491

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           +TV+VK++D D DR +I LS+K  +
Sbjct: 342 ETVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|238753503|ref|ZP_04614866.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
 gi|238708456|gb|EEQ00811.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETQLSREKAKRHEAWLTLEKAFEVAATVIGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V   G  +G +  S+ + +RV   + V+ 
Sbjct: 437 AEDPFNNYLSMNKKGAIVTGKVTAVDAKGATVELAGGVEGYLRASEATRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAI 531



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 20/255 (7%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +G++          +++G    L      V         + ++ K        + 
Sbjct: 104 VAATVIGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRD---TLHLEGKELEFKVIKLD 160

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG------- 571
                    R  ++   +    +  L+  +    V+ +          + +GG       
Sbjct: 161 QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHI 220

Query: 572 -KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIY 623
             +    V+     VN+ D+ TVK+          +        +   +I          
Sbjct: 221 TDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKL 280

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R 
Sbjct: 281 TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 340

Query: 682 KIKLSMKVVDQNTGK 696
           +I L +K    N  +
Sbjct: 341 RISLGLKQCKSNPWQ 355


>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
 gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           157F]
          Length = 491

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           +TV+VK++D D DR +I LS+K  +
Sbjct: 342 ETVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|66558592|ref|XP_623289.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Apis
           mellifera]
          Length = 1192

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 5/92 (5%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKE 666
             ++  PEV KIY G+V  ++ FG FV   G +   +GLVHISQL  E RVA  SDVV  
Sbjct: 230 EELSMDPEVGKIYSGKVANIVPFGCFVQLEGLKRRWEGLVHISQLRREGRVASASDVVSR 289

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           G  V VK+L+   + K+ LSMK VDQ TG+ +
Sbjct: 290 GQKVLVKVLNIGGQ-KVSLSMKDVDQETGRDL 320


>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
 gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
          Length = 403

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 12/132 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+ +G  V   +       + ID+D      S    E           T    
Sbjct: 233 HVDKPSDVLKVGQDVKVKV-------IGIDNDRHRISLSIKQTEPS----PFEQATADLN 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I++G+V  + +FGAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D
Sbjct: 282 EGDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNID 341

Query: 679 DR-GKIKLSMKV 689
               +I LS+K 
Sbjct: 342 PNDRRISLSIKA 353



 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    +E  RE     +     V  + +G+V ++ +FG
Sbjct: 153 YIGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +F+   G  DGLVHIS++S + V K SDV+K G  V VK++  D DR +I LS+K  + +
Sbjct: 213 SFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
 gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 261

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 15/234 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT--- 369
           R+DGR    +R ++AQ+     + GSS    G+TQ +  VT G   D   + S+ G    
Sbjct: 14  RLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVT-GP-CDPSKLRSIGGGGNS 71

Query: 370 ---QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              ++ +  +  +F   A  +  + G   +R             P L  T     T+ + 
Sbjct: 72  NAGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSNSTILLS 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDISGD 482
             I   DGS   A +  S+LAL+DAG+P+   +     G       + +    L D++  
Sbjct: 132 LHILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNLS 191

Query: 483 EDHL---GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           E+       +     G   G+ A+ M+ ++       M+       +    IL+
Sbjct: 192 EEQELPFLTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVREILD 245



 Score = 44.1 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 88/234 (37%), Gaps = 31/234 (13%)

Query: 20  TGRIARQ--SDGAVLATYGETVVLATVVYDRSL-----------KDGQDFFPLTVNYQER 66
           T +I+ Q  SDG+   + G T VL TV                  +  +   + V   E 
Sbjct: 27  TAQISTQPASDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGNSNAGEKAEVRV---EI 83

Query: 67  TYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSP 126
           ++A     G   ++  R  +    +S  +  +  P       + + +++++    L+ S 
Sbjct: 84  SFAG--FAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSNSTILLSLHILSLDGSL 141

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVD--------YINGQYVLNPRLDEDQGSLDLFV 178
               + A++ AL+ +G+P    +                    +L+  L E+Q    L V
Sbjct: 142 LSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDLNLSEEQELPFLTV 201

Query: 179 S----GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +    G  D V+ + +E  ++    +   +  G + CK V E +  + +   K+
Sbjct: 202 ATAGEGDGDGVVALVME-TRVQAGRLEGMLAVGVDGCKQVREILDGVIRSRGKK 254


>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 491

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           +TV+VK++D D DR +I LS+K 
Sbjct: 342 ETVFVKVIDVDLDRRRISLSLKQ 364



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|110833125|ref|YP_691984.1| S1 RNA-binding domain-containing protein [Alcanivorax borkumensis
           SK2]
 gi|110646236|emb|CAL15712.1| S1 RNA binding domain protein [Alcanivorax borkumensis SK2]
          Length = 790

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + N I +G V  V +FGAFV     +DGLVH+S L+ + V     VV  GD V VK+LD 
Sbjct: 648 KQNMILEGTVTNVTNFGAFVDVGVHQDGLVHVSALADKFVEDPHQVVAPGDIVKVKVLDV 707

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D DR +I L+M++ DQ T KP
Sbjct: 708 DLDRKRISLTMRMGDQPTEKP 728


>gi|327480937|gb|AEA84247.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 4166]
          Length = 560

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +      S  ++  A    +  +  I  ++    +    
Sbjct: 66  DEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I        
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 279 RVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCKSNPWED 356



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 439 DPFSNYAAVNDKGSIVRGTVKEVDAKGAIIDLGNDIEATLKASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K++  D + + I LS+K  D    K 
Sbjct: 499 DEVEAKIISIDRKSRVISLSIKSKDVEDEKD 529



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 316 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S     +   V   K+GD +   +L
Sbjct: 362 NKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEPGE-EAVRRFKKGDELDTVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGIKQLEDDP 440


>gi|290473267|ref|YP_003466133.1| protein yhgF [Xenorhabdus bovienii SS-2004]
 gi|289172566|emb|CBJ79335.1| Protein yhgF [Xenorhabdus bovienii SS-2004]
          Length = 780

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK++D D +
Sbjct: 651 MILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVENPHTVVKTGDIVKVKVMDIDLN 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIGLTMR-LDEQPGE 726


>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
 gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
 gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
 gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
 gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
 gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 262

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 17/233 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR     R    Q G      GS+    G T+ IV V  G RE ++   ++  +  
Sbjct: 40  PRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSV-FGPRESKK---AMLYSDT 95

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                + ++   AT     +         +  +  +A+   +        T+ + + + E
Sbjct: 96  GRLNCNVSYTTFAT----PIRGQGMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLE 151

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S GS     +  +SLAL DAG+ I   V  +++          I+ D + DE+       
Sbjct: 152 SGGSDLPIIISCASLALADAGIMIYDLVTSVSVSCFGKN----IIIDPTSDEEAWQDGSI 207

Query: 492 KVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            VA       IT +      G  S+  +  A++        + + + + L ++
Sbjct: 208 MVAYMPARKEITQL---TLTGEWSDGKITNAVELCMDACSKLCDILRERLKDA 257



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 16/206 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G+T V+ +V   R  K      D   L  N    T+A      G   +E  
Sbjct: 63  ASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQGMDNKE-- 120

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P ++S   AS AL  +G+
Sbjct: 121 ---YSAMLHKALEGAV--MLHTFPKTTVDVFALVLESGGSDLPIIISC--ASLALADAGI 173

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V    V       +++P  DE+    GS+ +         +       + S+  +
Sbjct: 174 MIYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSI-MVAYMPARKEITQLTLTGEWSDGKI 232

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCA 226
            +A+    + C  + + + +  K  A
Sbjct: 233 TNAVELCMDACSKLCDILRERLKDAA 258


>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 491

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EAVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|311280175|ref|YP_003942406.1| ribosomal protein S1 [Enterobacter cloacae SCF1]
 gi|308749370|gb|ADO49122.1| ribosomal protein S1 [Enterobacter cloacae SCF1]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|145300942|ref|YP_001143783.1| hypothetical protein ASA_4094 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853714|gb|ABO92035.1| Protein yhgF [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 768

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I +G V  V +FGAFV     +DGLVHIS L+   V    +VVK GD V VK+L+ D 
Sbjct: 649 EMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVLEVDA 708

Query: 679 DRGKIKLSMKVVDQNTGKP 697
            R +I L+M+ +D+  G+P
Sbjct: 709 PRKRISLTMR-LDEKAGQP 726


>gi|107102692|ref|ZP_01366610.1| hypothetical protein PaerPA_01003758 [Pseudomonas aeruginosa PACS2]
          Length = 542

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +      S  ++  A    +  +  I  ++    +    
Sbjct: 49  DEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVKGGFTVDVN 108

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 109 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 160

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 161 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 218

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 219 NVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 253



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 142 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 201

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I        
Sbjct: 202 HITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGT 261

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V++LD D+ 
Sbjct: 262 RVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEE 321

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 322 RRRISLGIKQCKSNPWED 339



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + E   I +G V +V   GA +      +G++  S++S +RV    +V+KEG
Sbjct: 422 DPFSNYASLHEKGSIVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEG 481

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           + V  K++  D + + I LS+K  D +  K 
Sbjct: 482 EEVEAKIISIDRKSRVISLSVKSKDVDDEKD 512



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +           +          G +  + DFG F+   G  D
Sbjct: 316 LDIDEERRRISLGIKQCKSN----PWEDFSSQFNKGDRISGTIKSITDFGIFIGLDGGID 371

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   V +   V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 372 GLVHLSDISWNEVGE-EAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP 423


>gi|157369952|ref|YP_001477941.1| 30S ribosomal protein S1 [Serratia proteamaculans 568]
 gi|157321716|gb|ABV40813.1| ribosomal protein S1 [Serratia proteamaculans 568]
          Length = 559

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVVGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V   G  +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYLSMNKKGTIVTGKVTAVDAKGATVELAGGVEGYLRASEASRDRIEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKNNPWQ 355


>gi|117621065|ref|YP_854833.1| S1 RNA-binding domain-containing protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562472|gb|ABK39420.1| S1 RNA binding domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 834

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + +G V  V +FGAFV     +DGLVHIS L+   V    +VVK GD V VK+L+ D 
Sbjct: 715 EMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVLEVDV 774

Query: 679 DRGKIKLSMKVVDQNTGKP 697
            R +I L+M+ +D+  G+P
Sbjct: 775 PRKRISLTMR-LDEKAGQP 792


>gi|293396771|ref|ZP_06641047.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
 gi|291421035|gb|EFE94288.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V   G  +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYLSMNKKGTIVTGKVTAVDAKGATVELAGGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|226943704|ref|YP_002798777.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
 gi|226718631|gb|ACO77802.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
          Length = 559

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +      S  ++  A    +  +  I  ++    +    
Sbjct: 66  DEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAFAADEVVKGIINGKVKGGFTVDIN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I        
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 279 RVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCKSNPWED 356



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   S   + E   I  G V +V   GA V      + ++  S++S +RV    +V+K
Sbjct: 437 ADDPFSSYASLNEKGSIVHGTVKEVDAKGAIVDLGNDIEAVLKASEISRDRVEDARNVLK 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           EGD V  K++  D + + I LS+K  D +  K  +
Sbjct: 497 EGDEVEAKIISIDRKSRVISLSIKAKDVDDEKDAI 531



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 316 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSSRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLD 676
                  G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GD +   +L 
Sbjct: 362 NKGDRITGTIKSITDFGIFIGLEGGIDGLVHLSDISWNEQGEEAVRRFKKGDELETVILS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K +  + 
Sbjct: 422 VDPERERISLGVKQLADDP 440


>gi|270261192|ref|ZP_06189465.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
 gi|270044676|gb|EFA17767.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVVGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V   G  +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYLSMNKKGTIVTGKVTAVDAKGATVELAGGVEGYLRASEASRDRIEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|75243278|sp|Q84T68|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
           Full=Exosome component 5; AltName: Full=Ribosomal
           RNA-processing protein 46; Short=oRrp46
 gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
 gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 238

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           ++ R DGR+   +R  S     L R HGS+ + +GDT  ++    G +       +  G 
Sbjct: 2   EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDT-IVLAAVYGPK-----PGTRKGE 55

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 +   + P         G   ++E  +    +R +  +   T     T  ++ ++
Sbjct: 56  NPEKASIEVVWKP-------MTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
             +DGS     +     AL+ AG+P+      I  G+++DG+   ++ D +  E+
Sbjct: 109 VGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE---VILDTNKAEE 160



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 26/153 (16%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G+T+VLA V   +      +  +   + V ++  T  +GK           
Sbjct: 27  AHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGK----------- 75

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             E E  ++  + R+++   L +      T VI+ V+ +D    P   ++ A  AAL+ +
Sbjct: 76  -QEKEYEMT--LKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC--AINACCAALVFA 130

Query: 142 GLPFEGPVVGAQVD---YINGQYVLNPRLDEDQ 171
           G+P +       +      +G+ +L+    E+Q
Sbjct: 131 GIPLKHL--AVAIGCGVLEDGEVILDTNKAEEQ 161


>gi|330945249|gb|EGH46912.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 355

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 46  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 105

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 106 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 157

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 158 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 215

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 216 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 250



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 139 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 198

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 199 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 258

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 259 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 318

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 319 RRRISLGIKQCKSNPWED 336


>gi|289619705|emb|CBI53988.1| unnamed protein product [Sordaria macrospora]
          Length = 1182

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLV 647
           G  K       + +  R  +R   + P + K+Y+G V  + DFGAFV+  G +   DGLV
Sbjct: 181 GRRKGRYDDEYDGDFRRPPVRETDEAPILYKVYEGHVTGIKDFGAFVNLHGVKGKVDGLV 240

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           HIS    +RV   SD++ +G  V VK++   + G++ LSMK VDQ TG  + 
Sbjct: 241 HISAFG-QRVNHPSDLLSKGQEVKVKVVKL-EGGRVGLSMKDVDQETGMDLA 290


>gi|163816329|ref|ZP_02207695.1| hypothetical protein COPEUT_02516 [Coprococcus eutactus ATCC 27759]
 gi|158448326|gb|EDP25321.1| hypothetical protein COPEUT_02516 [Coprococcus eutactus ATCC 27759]
          Length = 715

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 15/136 (11%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDV 616
              ++   +G G   +  I+++             K A     E+     R  +  + D+
Sbjct: 592 NVKKLAEELGTGIITLTDIIKELE-----------KPARDPRDEMPKPILRGDVLEMKDL 640

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   I KG V  V+DFGAFV     +DGLVHIS++S + +    DVV  GD V VK++ 
Sbjct: 641 TEG-MILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHPLDVVSVGDIVQVKVIG 699

Query: 677 FD-DRGKIKLSMKVVD 691
            D ++ +I+LSMK ++
Sbjct: 700 IDLNKKRIQLSMKGIN 715


>gi|88810653|ref|ZP_01125910.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
 gi|88792283|gb|EAR23393.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
          Length = 563

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + ++     I  ++    +    
Sbjct: 66  DDIEVALDAVEDGFGETRLSREKAKRARAWTHLEKAYEASESVTGQISGKVKGGFTVDLG 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   + N   +  V   +    E  
Sbjct: 126 HIRAFLPGSL---VDIRPVRDTTYLEGKDLEFKVIKLDPRRN---NVVVSRRAVVEEEYS 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A RE +       +  ++ KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+VV
Sbjct: 180 AEREALLE---KLQEGQVLKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRVKHPSEVV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD V VK+L FD +R ++ L +K + ++  + I 
Sbjct: 236 NVGDEVDVKVLKFDRERNRVSLGLKQLGEDPWENIA 271



 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 17/188 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------KVIRGIV 578
            R  ++ E      E+ L+  +    ++ +          + +GG         +    V
Sbjct: 169 SRRAVVEEEYSAEREALLEKLQEGQVLKGIVKNLTDYGAFVDLGGIDGLLHITDMAWRRV 228

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +     VN+ D+  VK+          +        +   +I      +    G+V  + 
Sbjct: 229 KHPSEVVNVGDEVDVKVLKFDRERNRVSLGLKQLGEDPWENIARRYPESSRVFGRVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G+FV      +GLVH+S++    +    + VV  G+ V V +LD D +R ++ L MK 
Sbjct: 289 DYGSFVEIEEGVEGLVHVSEMDWTNKNVNPAKVVTIGEEVEVMVLDIDEERRRVSLGMKQ 348

Query: 690 VDQNTGKP 697
              N    
Sbjct: 349 CQANPWDE 356



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +                      GQ+  + DFG FV   G  D
Sbjct: 333 LDIDEERRRVSLGMKQCQAN----PWDEFAAKNNKGDHVCGQIKSITDFGIFVGLAGGID 388

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS   +     V   K+G+ V   +L  D +R +I L +K ++Q+ 
Sbjct: 389 GLVHLSDLSWN-ITGEEAVRRYKKGEEVETVVLSVDPERERISLGIKQLEQDP 440



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S         + KG V +V   GA +   G   G +  + +  +RV      + E
Sbjct: 438 QDPLSSWVAEHPKGSLVKGSVKEVDAKGAVIELGGEVLGYLRAADIGRQRVDDARTALGE 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           GD V  K +  D R + I LS+K  DQ T +  V
Sbjct: 498 GDAVEAKFMAVDRRNRMINLSIKAKDQQTERESV 531


>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
          Length = 277

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 98/258 (37%), Gaps = 24/258 (9%)

Query: 298 IQAKVVRTVMLDKKVRMDGR--DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +           K  R+DGR      VR +  + GL+ +  GS+    G+T+ I     G
Sbjct: 21  LCKTAANKSFTQKDARVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLIC-CVYG 79

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            RE E+  +  +  +    M    F P +  E          E     +   ++ P +  
Sbjct: 80  PREMERKDE--TDMKSGRLMTDMRFAPFSCRERGS-WIQGSDEKDLSLMLLESLRPGVCL 136

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
                  + +   + E+DGS     V  +S+AL DAG+ +   V G ++      +    
Sbjct: 137 HKYPRSQIEVNVMVLENDGSVLAHAVTCASMALADAGIEMYDLVLGCSI----RQESATY 192

Query: 476 LSDISGDE-----------DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           L D +  E           D+ G +      + + I+ +Q D ++G   E+I+   ++  
Sbjct: 193 LIDPTYLEENGCNLASGSGDNFGSLTVAFLPSLNQISGLQSDGEMG---EDILTGGVRTC 249

Query: 525 KRGRLHILNEMSKVLSES 542
             G   +   + + L+++
Sbjct: 250 IEGCFKLYPVIQQALTKA 267



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 96/243 (39%), Gaps = 28/243 (11%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQE 65
           +   R + +  G I+ Q+ G+     G T ++  V   R ++   +       L  + + 
Sbjct: 44  QVDVRSVFVRCGLIS-QAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGRLMTDMRF 102

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLE 123
             ++  +  G +++       +E  +S M+  S+RP     K  +++ +V + V+++D  
Sbjct: 103 APFS-CRERGSWIQ-----GSDEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMVLENDGS 156

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ------------ 171
              H  ++  AS AL  +G+     V+G  +   +  Y+++P   E+             
Sbjct: 157 VLAH--AVTCASMALADAGIEMYDLVLGCSIRQESATYLIDPTYLEENGCNLASGSGDNF 214

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           GSL +    + + +  ++ +  ++ ED++   +      C  +   I +      +    
Sbjct: 215 GSLTVAFLPSLNQISGLQSDG-EMGEDILTGGVRTCIEGCFKLYPVIQQALTKAVRRKAP 273

Query: 232 IDS 234
              
Sbjct: 274 PSE 276


>gi|225558449|gb|EEH06733.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus G186AR]
          Length = 1266

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLV 647
           G  +       E    R     + D P + KIY G+V  + DFGAFV+  G +   DGLV
Sbjct: 268 GENRRRRDHDDEEFFKRPPTPELDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLV 327

Query: 648 HISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           H+S + +  RV   SD+V +G  V VK++      +I LSMK VDQ TG+ + 
Sbjct: 328 HVSAMQAGARVNHPSDLVSKGQPVKVKVITIQGS-RIGLSMKEVDQGTGRDLA 379


>gi|42519016|ref|NP_964946.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|41583303|gb|AAS08912.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|329667449|gb|AEB93397.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
          Length = 400

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G  V   +       + IDDD      S                T+   
Sbjct: 233 HVDKPSDVLKAGQDVKVKV-------IGIDDDRHRISLSIKQTLPS----PFEEATEGLH 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G+V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D
Sbjct: 282 EGDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVD 341

Query: 679 DR-GKIKLSMKVVDQNTGK 696
               +I LS+K  D N  K
Sbjct: 342 PSDRRISLSIKQADPNAAK 360



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++   K+   D    ++  S    IE  RE    ++     V    +G+V ++  FG
Sbjct: 153 YIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AFV   G  DGLVHIS++S + V K SDV+K G  V VK++   DDR +I LS+K    +
Sbjct: 213 AFVDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|261365785|ref|ZP_05978668.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
 gi|288565693|gb|EFC87253.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
          Length = 561

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V GI      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVGIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMINSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-IIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 245 KVLKFDQDKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEE 357



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D               A        +  
Sbjct: 317 VHPSK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC---QANPWEEFAANHN 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 364 KGDKI-SGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAG--EEAVRKYKKGEEVEAVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D D+ +I L +K ++ + 
Sbjct: 421 LAIDVDKERISLGIKQLEGDP 441



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I+LS+K  D    + 
Sbjct: 514 RSIRLSVKAKDAKENRE 530


>gi|242278186|ref|YP_002990315.1| 30S ribosomal protein S1 [Desulfovibrio salexigens DSM 2638]
 gi|242121080|gb|ACS78776.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 503

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 452 GVPISKPVAGIA--MGLVKDGDDFIILSDISGDEDHLGHMDFK---------VAGTDSGI 500
           G  I   V  I      V  G     + D     D  G +  K         ++  ++ I
Sbjct: 32  GDQIKGTVISITKDSVFVDTGSKVDGVVDRDELTDEEGELTVKDGDTVELYVISMNNNEI 91

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
              +     GG+  N++  A +        +            +    F P  +I     
Sbjct: 92  VLSKAMSGAGGL--NMLREAYENKVPVEGKVAETCKGGFRVKMMHRKVFCPVSQIDTSFV 149

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +     +G                +  +++G   + S  +   +   +   +     + +
Sbjct: 150 EDAEAFVGST---------HNFQVIKFEENGRNIVVSRRVLLEQEQEKAREAFMQDVQPD 200

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G+V K+M FGAFV      +G+VHIS+LS  R AK  DVV+ GD V V++L  + R
Sbjct: 201 AVMEGKVTKLMPFGAFVELTPGVEGMVHISELSWSRSAKPEDVVQPGDEVSVRILSMEPR 260

Query: 681 G-----KIKLSMKVVDQNTGKPI 698
                 KI LS+K +  +    I
Sbjct: 261 KDGKGLKIGLSLKQLQADPWDEI 283



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +  +V+  G +V   I+     K     DG       SL +++A  +    I D  +   
Sbjct: 239 KPEDVVQPGDEVSVRILSMEPRK-----DGKGLKIGLSLKQLQA--DPWDEIGDKFKAGD 291

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD- 679
              G VV+  DFGAFV      +GLVH+S++S T+RV K  D V  G  V V + D D  
Sbjct: 292 KVTGTVVRCADFGAFVEIAPGIEGLVHVSEMSYTKRVHKPEDEVSPGQEVAVMVKDIDPV 351

Query: 680 RGKIKLSMKVVDQNTGKPI 698
           + +I LSMK    +    +
Sbjct: 352 KRRIGLSMKDAAGDPWMDM 370



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +AA +    + D  +V +  +G V    +FG F++      GL+ +S+++        
Sbjct: 359 MKDAAGDPWMDMEDTFKVGQEVEGTVENRAEFGIFINLAPGITGLLPMSRITRSGKQAEL 418

Query: 662 DVVKEGDTVWVKLLDFDDRGK 682
           + +K GD V + + + +   +
Sbjct: 419 EALKPGDKVKISIEEINTTDR 439


>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
           27678]
 gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
 gi|171278819|gb|EDT46480.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
           27678]
 gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
          Length = 490

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|238855194|ref|ZP_04645513.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
 gi|260664557|ref|ZP_05865409.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
 gi|282932512|ref|ZP_06337937.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
 gi|313471977|ref|ZP_07812469.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
 gi|238832086|gb|EEQ24404.1| putative ribosomal protein S1 [Lactobacillus jensenii 269-3]
 gi|239529091|gb|EEQ68092.1| ribosomal protein S1 [Lactobacillus jensenii 1153]
 gi|260561622|gb|EEX27594.1| ribosomal protein S1 [Lactobacillus jensenii SJ-7A-US]
 gi|281303461|gb|EFA95638.1| 40S ribosomal protein S1 [Lactobacillus jensenii 208-1]
          Length = 402

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     V++   +     + IDDD      S    E           T      ++ +G+
Sbjct: 234 IDKPSDVLKTGQDVKVKVIGIDDDRHRISLSIKQTEPS----PFEQATSELSEGEVVEGE 289

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  +  FGAFV       GLVH+S++S +RV K SDV+K G+TV VK+L+ + D  +I L
Sbjct: 290 VKSLTSFGAFVEVADGIQGLVHVSEISNKRVEKPSDVLKVGETVKVKVLNINPDEKRISL 349

Query: 686 SMKVVDQ 692
           S+K    
Sbjct: 350 SIKQAQP 356



 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    GK I+  + +      ID +    I S      E   E   ++    
Sbjct: 142 ISNHFVSDLKPYIGKTIKVKITE------IDPNKNRLILSHKELIEEEREEAFETVASQL 195

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               I +G+V ++ +FGAFV   G  DGLVHIS++S + + K SDV+K G  V VK++  
Sbjct: 196 VAGDIVEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHIDKPSDVLKTGQDVKVKVIGI 254

Query: 678 -DDRGKIKLSMKVVDQNT 694
            DDR +I LS+K  + + 
Sbjct: 255 DDDRHRISLSIKQTEPSP 272


>gi|261339245|ref|ZP_05967103.1| hypothetical protein ENTCAN_05481 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319102|gb|EFC58040.1| ribosomal protein S1 [Enterobacter cancerogenus ATCC 35316]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVVGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREFKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKNNPWQ 355


>gi|154286240|ref|XP_001543915.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1]
 gi|150407556|gb|EDN03097.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1]
          Length = 1226

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLV 647
           G  +       E    R     + D P + KIY G+V  + DFGAFV+  G +   DGLV
Sbjct: 228 GENRRRRDHDDEEFFKRPPTPELDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLV 287

Query: 648 HISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           H+S +    RV   SD+V +G  V VK++      +I LSMK VDQ+TG+ + 
Sbjct: 288 HVSAMQVGARVNHPSDLVSKGQPVKVKVITIQGS-RIGLSMKEVDQSTGRDLA 339


>gi|308047928|ref|YP_003911494.1| Tex-like protein [Ferrimonas balearica DSM 9799]
 gi|307630118|gb|ADN74420.1| Tex-like protein [Ferrimonas balearica DSM 9799]
          Length = 775

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA           E   + +G V  V +FGAFV     +DG
Sbjct: 617 DILKELDKPGRDPRGQFETAAFAEGVEKVSDLEPGMVLEGVVTNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVHIS LS + V     VVK GD V VK+++ D  R +I LSM++ DQ 
Sbjct: 677 LVHISALSNKFVEDPRTVVKAGDVVKVKVMEVDVPRQRIGLSMRLDDQP 725


>gi|300716082|ref|YP_003740885.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
 gi|299061918|emb|CAX59034.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYISLNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASVDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 94/255 (36%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKNNPWQ 355


>gi|254670492|emb|CBA06216.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha153]
          Length = 589

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 43  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 102

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 103 SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 162

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 163 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 214

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 215 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 272

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 273 KVLKFDQDKQRVSLGMKQLGEDPW 296



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 294 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 353

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 354 GDEVEVMILEIDESRRRISLGMKQCQANPWEE 385



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+                A        +  
Sbjct: 345 VHPSK---VVQLGDEVEVMILE-------IDESRRRISLGMKQC---QANPWEEFAANHN 391

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 392 KGDKI-SGAVKSITDFGVFVGLPGGIDGLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVV 448

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 449 LAIDVEKERISLGIKQLEGDP 469



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 482 LVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 541

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 542 RSIKLSVKAKDAKESRE 558


>gi|253681106|ref|ZP_04861909.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873]
 gi|253562955|gb|EES92401.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873]
          Length = 718

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEV 619
           + +   +G+G   ++ I+++             K       E+     +      +  + 
Sbjct: 599 ESLAEKLGVGVPTLKDIIKEIK-----------KPGRDPREELPKPIFKKGIVDINQLKT 647

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + I  G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V V++L+ D+
Sbjct: 648 DMILTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEVDE 707

Query: 680 -RGKIKLSMK 688
            RG+I LSMK
Sbjct: 708 KRGRISLSMK 717


>gi|218548427|ref|YP_002382218.1| 30S ribosomal protein S1 [Escherichia fergusonii ATCC 35469]
 gi|218355968|emb|CAQ88584.1| 30S ribosomal subunit protein S1 [Escherichia fergusonii ATCC
           35469]
 gi|324113758|gb|EGC07733.1| ribosomal protein S1 [Escherichia fergusonii B253]
 gi|325496850|gb|EGC94709.1| 30S ribosomal protein S1 [Escherichia fergusonii ECD227]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
           20098]
 gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
           20098]
          Length = 490

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIEAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           +TV+VK++D D DR +I LS+K  +
Sbjct: 342 ETVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDTV   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTVEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|223404|prf||0804233A protein S1
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELD 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|88705966|ref|ZP_01103674.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
 gi|88699680|gb|EAQ96791.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      S   +  A    +  +  I  ++    +    
Sbjct: 66  DEVQVALETVEDGFGETKLSREKAKRAESWKDLEAAFAAEEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 TIRAFLPGSL---VDVRPVRDTAHLEGKELDFKVIKLDQKRN-----NVVVSRRAVMEAA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E   I KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSVERDALLAGLQEGQSI-KGVVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + G  + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 EVGQELDVKVLKFDRERNRVSLGLKQLGEDPWVEI 270



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT           +V  + D+G F       +GLVH+S++    +    S +V+ 
Sbjct: 265 DPWVEITGRYPEGSRVMAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D +R +I L +K   QN  
Sbjct: 325 GDEVEVMVLDIDEERRRISLGIKQCQQNPW 354



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V++V      V      +G++ ++ +S ERV       K GDTV  K++  D + 
Sbjct: 453 IVTGEVIEVDPKFVTVKLAEEVEGILKVADISRERVEDARSEFKVGDTVEAKIISADRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K  D +  K  V
Sbjct: 513 RGVALSIKAKDFDDEKEAV 531



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 91/260 (35%), Gaps = 46/260 (17%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +  ++ +  +  +       
Sbjct: 197 GVVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVEVGQELDVKVLKFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +  +++    P    +      + +      I  G + +  +
Sbjct: 250 ---RERNRVSLGLKQLGEDPWVEITGRYPEGSRVMAKVTNLTDYGCFAEIEEGVEGLVHV 306

Query: 578 VEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            E                        ++ID++           +    +    +      
Sbjct: 307 SEMDWTNKNVHPSKIVQLGDEVEVMVLDIDEERRRISLGIKQCQ----QNPWDAFASGAS 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 G +  + DFG F+   G  DGLVH+S +S        + V   K+GD +   +L
Sbjct: 363 KGDRISGVIKSITDFGIFIGLEGNIDGLVHLSDISWNETG--EEAVRNYKKGDEIETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGIKQLEDDP 440


>gi|146311087|ref|YP_001176161.1| 30S ribosomal protein S1 [Enterobacter sp. 638]
 gi|145317963|gb|ABP60110.1| SSU ribosomal protein S1P [Enterobacter sp. 638]
          Length = 557

 Score = 98.8 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVVGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVAVNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKNNPWQ 355


>gi|332029746|gb|EGI69615.1| ATP-dependent RNA helicase DHX8 [Acromyrmex echinatior]
          Length = 1198

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 5/93 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVK 665
             +++  PEV KIY G+V  ++ FG FV   G R   +GLVHISQL  E RVA  SDVV 
Sbjct: 235 EETLSAEPEVGKIYAGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRREGRVANASDVVS 294

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G  V VK+L    + K+ LSMK VDQ TG+ +
Sbjct: 295 RGQKVLVKVLSVGGQ-KVSLSMKDVDQETGRDL 326


>gi|167748874|ref|ZP_02421001.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662]
 gi|167651844|gb|EDR95973.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662]
          Length = 633

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 20/204 (9%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIP-----PDQIRNVI 567
           + I  +  +   R R  I +    +++  + +  E   ++E  M I             I
Sbjct: 428 QEIEFVISEFNPRKRRVIGDRKQLLVAAKKEKQKELFAKIEPGMKIDGVVKNVTDFGAFI 487

Query: 568 GMGG--------KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-- 617
            +GG        ++  G VE      +I D  TV I      +I  + +       +   
Sbjct: 488 DLGGADGLLHISEMSWGRVENPKKVFSIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAE 547

Query: 618 ---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K+
Sbjct: 548 EKYKVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKV 607

Query: 675 LDF-DDRGKIKLSMKVVDQNTGKP 697
           +DF  D  KI LSMK +  +  + 
Sbjct: 608 VDFKKDEKKISLSMKALLNDNAED 631



 Score = 37.6 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF-D 678
           ++ +G V+ V      ++     DG++  S+ S +      + + K GDT+  K+L   D
Sbjct: 296 EVVEGTVIDVKPDEIILNIGYKADGILTRSEYSNDAANLDLTTIAKVGDTMETKVLKVND 355

Query: 679 DRGKIKLSMKVVDQNTG 695
             G++ L+ K +    G
Sbjct: 356 GEGQVLLTYKRLAAEKG 372


>gi|295096388|emb|CBK85478.1| SSU ribosomal protein S1P [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVVGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKNNPWQ 355


>gi|296103087|ref|YP_003613233.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057546|gb|ADF62284.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVVGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKNNPWQ 355


>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 484

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGK 682
           +TV+VK++D D DR +
Sbjct: 342 ETVFVKVIDVDLDRRR 357



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|227889870|ref|ZP_04007675.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
 gi|227849734|gb|EEJ59820.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
          Length = 400

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     V++   +     + IDDD      S                T+      I +G+
Sbjct: 234 IDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPS----PFEEATEGLHEGDIIEGE 289

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
           V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D    +I L
Sbjct: 290 VKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISL 349

Query: 686 SMKVVDQNTGK 696
           S+K  D N  K
Sbjct: 350 SIKQADPNAAK 360



 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++   K+   D    ++  S    IE  RE    ++     V    +G+V ++  FG
Sbjct: 153 YIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AFV   G  DGLVHIS++S + + K SDV+K G  V VK++   DDR +I LS+K    +
Sbjct: 213 AFVDV-GGVDGLVHISEISYKHIDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila]
 gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila SB210]
          Length = 240

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 12/234 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           ++ R DGR    +R +   +G  Q   GS   I+G T+ + ++  G         S    
Sbjct: 9   QEFREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIK-GPHN-----KSTRRE 62

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 + YN  P +  +  ++    +         R +   V+         + I+  +
Sbjct: 63  SEGFLNVQYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSV 122

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKP-VAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
            ++DGS+  +     SLALMDAG+P+    V+   + L  +     IL D +  E     
Sbjct: 123 IQADGSAKSSIFNAISLALMDAGIPMKDFTVSSTVISLNSE-----ILLDATYQEQKKAS 177

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            +  ++          M+MK   IS+       + A  G   +   +   + ES
Sbjct: 178 AELIISYLPRSDQVDFMEMKSSKISQQDTKEMCKIAVDGCKQMYQILRTFVLES 231



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 110 ETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL-D 168
           E  +I++V+Q D  +   +    A S ALM +G+P +   V + V  +N + +L+    +
Sbjct: 115 EIDIIVSVIQADGSAKSSIF--NAISLALMDAGIPMKDFTVSSTVISLNSEILLDATYQE 172

Query: 169 EDQGSLDLFVS--GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           + + S +L +S     D V  +E++++++S+    +      + CK + + +    
Sbjct: 173 QKKASAELIISYLPRSDQVDFMEMKSSKISQQDTKEMCKIAVDGCKQMYQILRTFV 228


>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
          Length = 246

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           ++ R DGR+   +R  S     L R HGS+ + +GDT  ++    G +       +  G 
Sbjct: 2   EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDT-IVLAAVYGPK-----PGTRKGE 55

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 +   + P         G   ++E  +    +R +  +   T     T  ++ ++
Sbjct: 56  NPEKASIEVVWKP-------MTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
             +DGS     +     AL+ AG+P+      I  G+++DG+   ++ D +  E+
Sbjct: 109 VGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE---VILDTNKAEE 160



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 26/153 (16%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G+T+VLA V   +      +  +   + V ++  T  +GK           
Sbjct: 27  AHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGK----------- 75

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             E E  ++  + R+++   L +      T VI+ V+ +D    P   ++ A  AAL+ +
Sbjct: 76  -QEKEYEMT--LKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC--AINACCAALVFA 130

Query: 142 GLPFEGPVVGAQVD---YINGQYVLNPRLDEDQ 171
           G+P +       +      +G+ +L+    E+Q
Sbjct: 131 GIPLKHL--AVAIGCGVLEDGEVILDTNKAEEQ 161


>gi|259500657|ref|ZP_05743559.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335]
 gi|302191346|ref|ZP_07267600.1| 30S ribosomal protein S1 [Lactobacillus iners AB-1]
 gi|309804181|ref|ZP_07698259.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d]
 gi|309805734|ref|ZP_07699774.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c]
 gi|309807097|ref|ZP_07701076.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b]
 gi|309807721|ref|ZP_07701656.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a]
 gi|309809307|ref|ZP_07703176.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D]
 gi|312871404|ref|ZP_07731499.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a]
 gi|312872369|ref|ZP_07732439.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1]
 gi|312873932|ref|ZP_07733968.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d]
 gi|312875507|ref|ZP_07735510.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b]
 gi|315653508|ref|ZP_07906429.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195]
 gi|325912878|ref|ZP_08175256.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B]
 gi|329921336|ref|ZP_08277774.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G]
 gi|259168041|gb|EEW52536.1| 30S ribosomal protein S1 [Lactobacillus iners DSM 13335]
 gi|308163764|gb|EFO66033.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 11V1-d]
 gi|308164987|gb|EFO67230.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 09V1-c]
 gi|308166527|gb|EFO68727.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 03V1-b]
 gi|308169032|gb|EFO71115.1| putative ribosomal protein S1 [Lactobacillus iners LactinV 01V1-a]
 gi|308170420|gb|EFO72444.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 2503V10-D]
 gi|311089018|gb|EFQ47459.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2053A-b]
 gi|311090481|gb|EFQ48889.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2052A-d]
 gi|311092192|gb|EFQ50566.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 2062A-h1]
 gi|311093057|gb|EFQ51406.1| putative ribosomal protein S1 [Lactobacillus iners LEAF 3008A-a]
 gi|315489199|gb|EFU78840.1| 30S ribosomal protein S1 [Lactobacillus iners ATCC 55195]
 gi|325477871|gb|EGC81005.1| putative ribosomal protein S1 [Lactobacillus iners UPII 60-B]
 gi|328934628|gb|EGG31132.1| putative ribosomal protein S1 [Lactobacillus iners SPIN 1401G]
          Length = 395

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     V++   E     + IDDD      S                T       +  G+
Sbjct: 234 IDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPS----PFEEATSELHEGDVIDGE 289

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
           V  +  FGAF+       GLVH+S++S +RV K SD +K G TV VK+L  D    +I L
Sbjct: 290 VKSLTSFGAFIEVASGIQGLVHVSEISNKRVEKPSDFLKVGQTVKVKVLGIDPSDKRISL 349

Query: 686 SMKVVDQN 693
           S+K  + +
Sbjct: 350 SIKQTESD 357



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++   K+  ID +    I S      E   E   S+ +   V    +G+V ++  FG
Sbjct: 153 YIGKKMNLKITEIDPNKNRLILSRKDLIEEEREEAFESVANQLVVGDTIEGKVSRLTGFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AF++  G  DGLVHIS++S + + K SDV+K G  V VK++   DDR +I LS+K    +
Sbjct: 213 AFINV-GGVDGLVHISEISYKHIDKPSDVLKVGQEVKVKVIGIDDDRRRISLSIKQTLPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|300361576|ref|ZP_07057753.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
 gi|300354195|gb|EFJ70066.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
          Length = 398

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G  V   +       + IDDD      S                T+   
Sbjct: 233 HVDKPSDVLKAGQDVKVKV-------IGIDDDRHRISLSIKQTLPS----PFEEATEGLH 281

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G+V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D
Sbjct: 282 EGDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVD 341

Query: 679 DR-GKIKLSMKVVDQNTGK 696
               +I LS+K  D N  K
Sbjct: 342 PSDRRISLSIKQADPNAAK 360



 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++   K+   D    ++  S    IE  RE    ++     V    +G+V ++  FG
Sbjct: 153 YIGKKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AFV   G  DGLVHIS++S + V K SDV+K G  V VK++   DDR +I LS+K    +
Sbjct: 213 AFVDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|237730874|ref|ZP_04561355.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
 gi|283833798|ref|ZP_06353539.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
 gi|226906413|gb|EEH92331.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
 gi|291070463|gb|EFE08572.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKNNPWQ 355


>gi|225439092|ref|XP_002268542.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 1175

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+VK
Sbjct: 219 EPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVK 278

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++    + K+ LSM+ VDQNTG+ ++
Sbjct: 279 VISVSGQ-KLSLSMRDVDQNTGRDLI 303


>gi|251789939|ref|YP_003004660.1| 30S ribosomal protein S1 [Dickeya zeae Ech1591]
 gi|247538560|gb|ACT07181.1| ribosomal protein S1 [Dickeya zeae Ech1591]
          Length = 569

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 78  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 248 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 283



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 449 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATLVLN 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD +  K    D + + + LS++  D+   K  +
Sbjct: 509 VGDEIEAKYTGVDRKNRVVSLSIRAKDEADEKDAI 543



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 209 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 263

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 264 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 323

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 324 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 379

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 380 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 438

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 439 ERISLGVKQLAEDP 452



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 234 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 294 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKANPWQ 367


>gi|317470286|ref|ZP_07929680.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
           sp. 3_2_56FAA]
 gi|316902259|gb|EFV24179.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
           sp. 3_2_56FAA]
          Length = 633

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 20/204 (9%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIP-----PDQIRNVI 567
           + I  +  +   R R  I +    +++  + +  E   ++E  M I             I
Sbjct: 428 QEIEFVISEFNPRKRRVIGDRKQLLVAAKKEKQKELFAKIEPGMKIDGVVKNVTDFGAFI 487

Query: 568 GMGG--------KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-- 617
            +GG        ++  G VE      +I D  TV I      +I  + +       +   
Sbjct: 488 DLGGADGLLHISEMSWGRVENPKKVFSIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAE 547

Query: 618 ---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K+
Sbjct: 548 EKYKVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKV 607

Query: 675 LDF-DDRGKIKLSMKVVDQNTGKP 697
           +DF  D  KI LSMK +  +  + 
Sbjct: 608 VDFKKDEKKISLSMKALLNDNAED 631



 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF-D 678
           ++ +G V+ V      ++     DG++  S+ S +      + + K GDT+  K+L   D
Sbjct: 296 EVVEGTVIDVKPDEIILNIGYKADGILTRSEYSNDAANLDLTTIAKVGDTMETKVLKVND 355

Query: 679 DRGKIKLSMKVVDQNTG 695
             G++ L+ K +    G
Sbjct: 356 GEGQVLLTYKRLAAEKG 372


>gi|283784737|ref|YP_003364602.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
 gi|282948191|emb|CBG87758.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|156934599|ref|YP_001438515.1| 30S ribosomal protein S1 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532853|gb|ABU77679.1| hypothetical protein ESA_02433 [Cronobacter sakazakii ATCC BAA-894]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|317047558|ref|YP_004115206.1| 30S ribosomal protein S1 [Pantoea sp. At-9b]
 gi|316949175|gb|ADU68650.1| ribosomal protein S1 [Pantoea sp. At-9b]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYITVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASLDRIEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|300937745|ref|ZP_07152546.1| ribosomal protein S1 [Escherichia coli MS 21-1]
 gi|300457252|gb|EFK20745.1| ribosomal protein S1 [Escherichia coli MS 21-1]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|260597309|ref|YP_003209880.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
 gi|260216486|emb|CBA29643.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|271500810|ref|YP_003333835.1| 30S ribosomal protein S1 [Dickeya dadantii Ech586]
 gi|270344365|gb|ACZ77130.1| ribosomal protein S1 [Dickeya dadantii Ech586]
          Length = 569

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 78  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 248 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 283



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 449 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATLVLN 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD +  K    D + + + LS++  D+   K  +
Sbjct: 509 VGDEIEAKYTGVDRKNRVVSLSIRAKDEADEKDAI 543



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 209 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 263

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 264 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 323

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 324 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 379

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 380 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 438

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 439 ERISLGVKQLAEDP 452



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 234 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 294 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKANPWQ 367


>gi|253990303|ref|YP_003041659.1| 30S ribosomal protein S1 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781753|emb|CAQ84916.1| 30s ribosomal protein s1 [Photorhabdus asymbiotica]
          Length = 569

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 78  DEIDVALDAVEDGFGETVLSREKAKRHEAWLMLEKAYEDAETVMGIINGKVKGGFTVELN 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 248 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 283



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 449 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 509 VGDAVEAKYTGVDRKNRVINLSVRAKDEADEKDAI 543



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 124 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDQKRN 176

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 177 NV-VVSRRAVIESENSAERDQL----LENLQEGMEVK--------GIVKNLTDYGAFVDL 223

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 224 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRERTRVSLGLKQLGEDP 278

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 279 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 338

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +   +    N   +G++  + DFG F+ 
Sbjct: 339 VVEVMVLDIDEERRRISLGLKQCKAN----PWQLFAETHNKNDRVEGKIKSITDFGIFIG 394

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   V     V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 395 LDGGIDGLVHLSDISWN-VTGEEAVREYKKGDEIAAVVLQVDAERERISLGIKQLAEDP 452



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 234 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 294 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKANPWQ 367


>gi|157146403|ref|YP_001453721.1| 30S ribosomal protein S1 [Citrobacter koseri ATCC BAA-895]
 gi|157083608|gb|ABV13286.1| hypothetical protein CKO_02162 [Citrobacter koseri ATCC BAA-895]
          Length = 557

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|88798958|ref|ZP_01114539.1| 30S ribosomal protein S1 [Reinekea sp. MED297]
 gi|88778185|gb|EAR09379.1| 30S ribosomal protein S1 [Reinekea sp. MED297]
          Length = 560

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 94/215 (43%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +   +  A +  +  +  I  ++    +    
Sbjct: 66  DEVKVALEAVEDGFGDTRLSREKAKRAEAWAELEKAYEAKEVVKGVINGKVKGGFTVDVS 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   + N      V ++  ++ E  
Sbjct: 126 SVRAFLPGSL---VDIRPVRDTLHLEGKELEFKVIKLDQRRN-----NVVVSRRAVLEAS 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    + ++ E  +I KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREELLENLQEGQEI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 QVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVDI 270



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
              +V  + D+G F       +GLVH+S++    +    S VV+ GD + V +LD D +R
Sbjct: 280 VTAKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEIEVMVLDIDEER 339

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L +K    N  + 
Sbjct: 340 RRISLGIKQTVVNPWED 356



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  I  +V      ++ID++            +           +  
Sbjct: 316 IHPSKVVQV----GDEIEVMV------LDIDEERRRISLGIKQTVVN----PWEDFANRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
             +    G++  + DFG F+   G  DGLVH+S +S        + V   K+GD +   +
Sbjct: 362 NKSDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ESGEEAVRKYKKGDELETTI 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K +D + 
Sbjct: 420 LSIDPERERISLGIKQLDMDP 440



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            +         +   I KG V +V    A +      +G++  S++S ++V    +V+ E
Sbjct: 438 MDPFAEYAAENDKGTIVKGTVKEVDAKAAVITLAEDIEGVLKASEISRDKVEDARNVLNE 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           G+ V  K++  D + + I LS+K  D +  K  V
Sbjct: 498 GEEVEAKIVSIDRKNRVISLSIKAKDFDDEKAAV 531


>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
 gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
          Length = 277

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 17/239 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ-- 370
           R+DGR    +R ++AQ+       GSS    G T+ + VVT G  E       + G    
Sbjct: 14  RVDGRRWNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVT-GPSEPGPRRGGVGGAGGG 72

Query: 371 ---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
                    + + ++       ++ +  R G   +R +        A+   L        
Sbjct: 73  GGGGGGAGGKAEIVVGIVIAGFSSVDRKRHGRGDKRTLELASTVANALAASLHTHLFPHS 132

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILS 477
            + +   +   DGS   A +  ++LA +DAG+P++  VA    G       + +    L 
Sbjct: 133 QINVSLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLL 192

Query: 478 DIS-GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           D++  +E  L  +     G    +  +  + ++       M+       +    IL+ +
Sbjct: 193 DLNHQEEQELPGLTVATLGESDRVAVLVCESRVQVSRLEGMLAVGVDGCKQMREILDRV 251



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 75/225 (33%), Gaps = 27/225 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA--------VGKIPGGY- 77
           +DG+     G T V+  V         +                       VG +  G+ 
Sbjct: 36  ADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGGGGGGGGAGGKAEIVVGIVIAGFS 95

Query: 78  ---LRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMV 132
               +R  R  +  + ++  +  ++           ++  V ++V+  D   S     + 
Sbjct: 96  SVDRKRHGRGDKRTLELASTVANALAASLHTHLFPHSQINVSLHVLSQDG--SLLAALIN 153

Query: 133 AASAALMLSGLPFEGPVVGAQVD--------YINGQYVLNPRLDEDQGSLDLFVS--GTQ 182
           AA+ A + +G+P    V                    +L+    E+Q    L V+  G  
Sbjct: 154 AATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDLNHQEEQELPGLTVATLGES 213

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           D V ++  E+  +    +   +  G + CK + E + ++ +   +
Sbjct: 214 DRVAVLVCESR-VQVSRLEGMLAVGVDGCKQMREILDRVVRDKGR 257


>gi|304387393|ref|ZP_07369585.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
 gi|304338644|gb|EFM04762.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
          Length = 589

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 43  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 102

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 103 SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 162

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 163 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 214

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 215 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 272

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 273 KVLKFDQEKQRVSLGMKQLGEDPW 296



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 294 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 353

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 354 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 385



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 365 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 421

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 422 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 469



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 482 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 541

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 542 RSIKLSVKAKDAKESRE 558


>gi|33519839|ref|NP_878671.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
 gi|33504184|emb|CAD83446.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
          Length = 575

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 29/252 (11%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            + LV  G        I+   +  G ++  V      I    +D    G  E I+  + +
Sbjct: 34  EIVLVDAGLKSESAIPINQFYNSHGELEVTVGDYIDVI----LDAVEDGFGETIL--SRE 87

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +AKR    +  E      ++  ++   T  +    +       + G+   +   +V+   
Sbjct: 88  KAKRHESWLYLE------KAYQEVTTVTGVIHG-KVKGGFTVELNGIRAFLPGSLVDIRP 140

Query: 583 AKVNIDDDGTVKIASSSL---------AEIEAAREMIRSITDVPEVNK-----IYKGQVV 628
            K +ID +G                      AA E   S      ++K     I KG V 
Sbjct: 141 IKDSIDLEGQTCDFKVIKLDHKRNNVVVSRRAAIEFEHSAERDQLLHKLHEGIIIKGVVK 200

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + D+GAF+   G  DGL+HI+ ++ +RV   SD++  GD + VK+L FD +R ++ L +
Sbjct: 201 NLTDYGAFIDL-GGIDGLLHITDIAWKRVKHPSDIISIGDEISVKVLKFDRERTRVSLGL 259

Query: 688 KVVDQNTGKPIV 699
           K ++ +    IV
Sbjct: 260 KQLEDDPWISIV 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     ++I D+ +VK+          +        +   SI    +      
Sbjct: 222 DIAWKRVKHPSDIISIGDEISVKVLKFDRERTRVSLGLKQLEDDPWISIVRNYKEGDKIT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G F+   G  +GLVHIS++    +    S VV+ G+ + V +LD D DR +
Sbjct: 282 GKVTNLTDYGCFIEIAGGVEGLVHISEMDWTNKNIHPSKVVEVGECIEVMVLDIDEDRRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKVNPWQ 355



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 19/141 (13%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G+ I  +V      ++ID+D           ++       +  + + 
Sbjct: 316 IHPSKVVEV----GECIEVMV------LDIDEDRRRISLGLKQCKVN----PWQRFSQIY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G++  + DFG F+      DGLVH+S ++   V+  ++++   K+GD V   +
Sbjct: 362 ARGDRVTGRIKSITDFGIFIGLEDGIDGLVHLSDIAWS-VSNNNELISQYKKGDEVTAVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I LS+K + ++ 
Sbjct: 421 LQVDSERERISLSIKQLTEDP 441


>gi|312959704|ref|ZP_07774221.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
 gi|311286421|gb|EFQ64985.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
          Length = 560

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 98/235 (41%), Gaps = 11/235 (4%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            L+     +    D++ +     H+         G T +  +         ++  A    
Sbjct: 48  ALIPLEQFYNDAGDLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAE 107

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           +  +  I  ++    +     +  F P      +    +R+   + GK +   V +   K
Sbjct: 108 EVVKGVINGKVKGGFTVDVNGIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQK 164

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            N      V ++  S+ E E + E    +  + E  ++ KG V  + D+GAFV   G  D
Sbjct: 165 RN-----NVVVSRRSVLEAENSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVD 217

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL+HI+ ++ +R+   S++V  GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 218 GLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 272



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 161 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 220

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 221 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 280

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 281 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 340

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 341 RRRISLGIKQCKSNPWED 358



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I KG V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 441 DPFSEYVQENDKGAIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNVLKEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             V  K++  D + + I+LS+K  D+   K  +
Sbjct: 501 QEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAI 533



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 318 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 364 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 422

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 423 SVDPERERISLGIKQLESDP 442


>gi|300173425|ref|YP_003772591.1| ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
 gi|299887804|emb|CBL91772.1| Ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
          Length = 397

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D    +I+ S  A     R       +      + +G V +V DFGAFV 
Sbjct: 245 DKVNVKILALDTEKGRISLSIKAT---QRGPWDEAAEQIAAGAVLEGTVKRVKDFGAFVE 301

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GDTV VK+LD      +I LSMK +++   + 
Sbjct: 302 ILPGIEGLVHVSQISNKRIENPSEVLKSGDTVQVKVLDIKPAEERISLSMKALEEKPQRE 361



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +  I     V ++ +G V ++ DFGAFV   G  D
Sbjct: 163 IEIDPANARLILSRKAVAAQERAAQLAEIFSKLSVGEVVEGTVARLTDFGAFVDL-GGVD 221

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S++S +RV   +DV+ +GD V VK+L  D ++G+I LS+K   +     
Sbjct: 222 GLVHVSEISHDRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRGPWDE 275


>gi|149376223|ref|ZP_01893987.1| Transcriptional accessory protein [Marinobacter algicola DG893]
 gi|149359420|gb|EDM47880.1| Transcriptional accessory protein [Marinobacter algicola DG893]
          Length = 776

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 575 RGIVEQTG-AKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + EQ G   + +I  +              A+ E      +  +   + +G V  V +
Sbjct: 604 DYVTEQFGLPTIKDIITELEKPGRDPRPEFRFASFEEGVETLNDLKPGMVLEGSVTNVTN 663

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS   V    +VVK GD V VK++D D  R +I LSM++ D
Sbjct: 664 FGAFVDIGVHQDGLVHISALSNTFVKDPREVVKAGDIVKVKVMDVDIPRKRIALSMRMDD 723

Query: 692 QNTGK 696
           Q   K
Sbjct: 724 QPGEK 728


>gi|320184257|gb|EFW59070.1| SSU ribosomal protein S1p [Shigella flexneri CDC 796-83]
          Length = 560

 Score = 98.4 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM
           43247]
 gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247]
          Length = 487

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDAMVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
          Length = 500

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         ++ KG+V K++ FG F+      +GLVHIS+L+   V     VVK  
Sbjct: 282 DPWQRFARTHVPGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKAN 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + V+VK++D D DR +I LS+K  ++
Sbjct: 342 EDVFVKVIDVDLDRRRISLSLKQANE 367


>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
 gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
          Length = 500

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         ++ KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + V+VK++D D DR +I LS+K   +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQATE 367


>gi|21633221|gb|AAM22483.1| ribosomal protein S1-like protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 124

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            + +G+V  + +FGAFV       GLVH+S+++ + V K SDV+K G  V VK+L+ D  
Sbjct: 6   DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPS 65

Query: 680 RGKIKLSMKVVDQNTG 695
           + +I LS+K VD    
Sbjct: 66  KRRISLSIKQVDPENA 81


>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018]
 gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
          Length = 500

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         ++ KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + V+VK++D D DR +I LS+K  ++
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQANE 367


>gi|254515153|ref|ZP_05127214.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
 gi|219677396|gb|EED33761.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
          Length = 557

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 89/215 (41%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      S   +  A    +  +  I  ++    +    
Sbjct: 66  DEVQVALETVEDGFGETKLSREKAKRAESWKDLEAAFAAEEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 TIRAFLPGSL---VDVRPVRDTAHLEGKELDFKVIKLDQKRN-----NVVVSRRAVMEAA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSVERDALLAGLQEGQSV-KGVVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + G  + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 EVGQELDVKVLKFDRERNRVSLGLKQLGEDPWVEI 270



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT           +V  + D+G F       +GLVH+S++    +    S +V+ 
Sbjct: 265 DPWVEITGRYPEGSRVMAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D +R +I L +K   QN  
Sbjct: 325 GDEVEVMVLDIDEERRRISLGIKQCQQNPW 354



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 91/260 (35%), Gaps = 46/260 (17%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +  ++ +  +  +       
Sbjct: 197 GVVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVEVGQELDVKVLKFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +  +++    P    +      + +      I  G + +  +
Sbjct: 250 ---RERNRVSLGLKQLGEDPWVEITGRYPEGSRVMAKVTNLTDYGCFAEIEEGVEGLVHV 306

Query: 578 VEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            E                        ++ID++           +    +    +      
Sbjct: 307 SEMDWTNKNVHPSKIVQLGDEVEVMVLDIDEERRRISLGIKQCQ----QNPWDAFASGAT 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 G +  + DFG F+   G  DGLVH+S +S        + V   K+GD +   +L
Sbjct: 363 KGDRISGVIKSITDFGIFIGLEGNIDGLVHLSDISWNETG--EEAVRNYKKGDEIETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGVKQLEDDP 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V++V      V      +G++  + +S ERV       K GDTV  K++  D + 
Sbjct: 453 IVTGEVIEVDPKFVTVKLADEVEGILKAADISRERVEDARSEFKVGDTVEAKIISADRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K  D +  K  V
Sbjct: 513 RGLALSIKAKDFDDEKEAV 531


>gi|281413894|ref|ZP_06245636.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
          Length = 413

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      E  ++  G V  +++FG
Sbjct: 91  YIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFG 150

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 151 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQED 209

Query: 694 TGK 696
             +
Sbjct: 210 PWQ 212



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FGAFV      +GLVHIS+L++  +     VV   
Sbjct: 209 DPWQLFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVN 268

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 269 DELFVKVIDIDLERRRISLSLKQANE 294


>gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 EDL933]
 gi|15830248|ref|NP_309021.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. Sakai]
 gi|16128878|ref|NP_415431.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. MG1655]
 gi|24112320|ref|NP_706830.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 301]
 gi|26246936|ref|NP_752976.1| 30S ribosomal protein S1 [Escherichia coli CFT073]
 gi|30062446|ref|NP_836617.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
 gi|74311468|ref|YP_309887.1| 30S ribosomal protein S1 [Shigella sonnei Ss046]
 gi|82544650|ref|YP_408597.1| 30S ribosomal protein S1 [Shigella boydii Sb227]
 gi|89107761|ref|AP_001541.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. W3110]
 gi|91210012|ref|YP_539998.1| 30S ribosomal protein S1 [Escherichia coli UTI89]
 gi|110641108|ref|YP_668838.1| 30S ribosomal protein S1 [Escherichia coli 536]
 gi|110804919|ref|YP_688439.1| 30S ribosomal protein S1 [Shigella flexneri 5 str. 8401]
 gi|117623129|ref|YP_852042.1| 30S ribosomal protein S1 [Escherichia coli APEC O1]
 gi|157156817|ref|YP_001462129.1| 30S ribosomal protein S1 [Escherichia coli E24377A]
 gi|157160433|ref|YP_001457751.1| 30S ribosomal protein S1 [Escherichia coli HS]
 gi|168751174|ref|ZP_02776196.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
 gi|168757003|ref|ZP_02782010.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
 gi|168762954|ref|ZP_02787961.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
 gi|168787340|ref|ZP_02812347.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
 gi|168801406|ref|ZP_02826413.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
 gi|170020687|ref|YP_001725641.1| 30S ribosomal protein S1 [Escherichia coli ATCC 8739]
 gi|170080569|ref|YP_001729889.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682691|ref|YP_001744259.1| 30S ribosomal protein S1 [Escherichia coli SMS-3-5]
 gi|170769166|ref|ZP_02903619.1| ribosomal protein S1 [Escherichia albertii TW07627]
 gi|187733119|ref|YP_001880894.1| 30S ribosomal protein S1 [Shigella boydii CDC 3083-94]
 gi|188493632|ref|ZP_03000902.1| ribosomal protein S1 [Escherichia coli 53638]
 gi|191172054|ref|ZP_03033598.1| ribosomal protein S1 [Escherichia coli F11]
 gi|193064659|ref|ZP_03045738.1| ribosomal protein S1 [Escherichia coli E22]
 gi|193070761|ref|ZP_03051696.1| ribosomal protein S1 [Escherichia coli E110019]
 gi|194428403|ref|ZP_03060944.1| ribosomal protein S1 [Escherichia coli B171]
 gi|194438750|ref|ZP_03070837.1| ribosomal protein S1 [Escherichia coli 101-1]
 gi|208815475|ref|ZP_03256654.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
 gi|208822805|ref|ZP_03263124.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
 gi|209397472|ref|YP_002269583.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
 gi|209918161|ref|YP_002292245.1| 30S ribosomal protein S1 [Escherichia coli SE11]
 gi|215486036|ref|YP_002328467.1| 30S ribosomal protein S1 [Escherichia coli O127:H6 str. E2348/69]
 gi|217326370|ref|ZP_03442454.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
 gi|218553498|ref|YP_002386411.1| 30S ribosomal protein S1 [Escherichia coli IAI1]
 gi|218557816|ref|YP_002390729.1| 30S ribosomal protein S1 [Escherichia coli S88]
 gi|218688751|ref|YP_002396963.1| 30S ribosomal protein S1 [Escherichia coli ED1a]
 gi|218694384|ref|YP_002402051.1| 30S ribosomal protein S1 [Escherichia coli 55989]
 gi|218700570|ref|YP_002408199.1| 30S ribosomal protein S1 [Escherichia coli IAI39]
 gi|218704338|ref|YP_002411857.1| 30S ribosomal protein S1 [Escherichia coli UMN026]
 gi|227884124|ref|ZP_04001929.1| 30S ribosomal protein S1 [Escherichia coli 83972]
 gi|237707101|ref|ZP_04537582.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
 gi|238900169|ref|YP_002925965.1| 30S ribosomal subunit protein S1 [Escherichia coli BW2952]
 gi|253774060|ref|YP_003036891.1| 30S ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161025|ref|YP_003044133.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
 gi|254792110|ref|YP_003076947.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. TW14359]
 gi|256020961|ref|ZP_05434826.1| 30S ribosomal protein S1 [Shigella sp. D9]
 gi|256023388|ref|ZP_05437253.1| 30S ribosomal protein S1 [Escherichia sp. 4_1_40B]
 gi|260843161|ref|YP_003220939.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
           12009]
 gi|260854202|ref|YP_003228093.1| 30S ribosomal subunit protein S1 [Escherichia coli O26:H11 str.
           11368]
 gi|260867083|ref|YP_003233485.1| 30S ribosomal subunit protein S1 [Escherichia coli O111:H- str.
           11128]
 gi|261227414|ref|ZP_05941695.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256163|ref|ZP_05948696.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281912|ref|YP_003498730.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
 gi|293404216|ref|ZP_06648210.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
 gi|293409288|ref|ZP_06652864.1| 30S ribosomal protein S1 [Escherichia coli B354]
 gi|293414191|ref|ZP_06656840.1| 30S ribosomal protein S1 [Escherichia coli B185]
 gi|293433208|ref|ZP_06661636.1| 30S ribosomal protein S1 [Escherichia coli B088]
 gi|297520622|ref|ZP_06939008.1| 30S ribosomal protein S1 [Escherichia coli OP50]
 gi|298379996|ref|ZP_06989601.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
 gi|300816985|ref|ZP_07097204.1| ribosomal protein S1 [Escherichia coli MS 107-1]
 gi|300823651|ref|ZP_07103778.1| ribosomal protein S1 [Escherichia coli MS 119-7]
 gi|300901659|ref|ZP_07119719.1| ribosomal protein S1 [Escherichia coli MS 198-1]
 gi|300902930|ref|ZP_07120875.1| ribosomal protein S1 [Escherichia coli MS 84-1]
 gi|300921052|ref|ZP_07137438.1| ribosomal protein S1 [Escherichia coli MS 115-1]
 gi|300925411|ref|ZP_07141296.1| ribosomal protein S1 [Escherichia coli MS 182-1]
 gi|300929606|ref|ZP_07145068.1| ribosomal protein S1 [Escherichia coli MS 187-1]
 gi|300949727|ref|ZP_07163705.1| ribosomal protein S1 [Escherichia coli MS 116-1]
 gi|300955441|ref|ZP_07167815.1| ribosomal protein S1 [Escherichia coli MS 175-1]
 gi|300978464|ref|ZP_07174279.1| ribosomal protein S1 [Escherichia coli MS 45-1]
 gi|300983139|ref|ZP_07176453.1| ribosomal protein S1 [Escherichia coli MS 200-1]
 gi|301022405|ref|ZP_07186288.1| ribosomal protein S1 [Escherichia coli MS 196-1]
 gi|301023014|ref|ZP_07186825.1| ribosomal protein S1 [Escherichia coli MS 69-1]
 gi|301047830|ref|ZP_07194881.1| ribosomal protein S1 [Escherichia coli MS 185-1]
 gi|301302481|ref|ZP_07208612.1| ribosomal protein S1 [Escherichia coli MS 124-1]
 gi|301326622|ref|ZP_07219955.1| ribosomal protein S1 [Escherichia coli MS 78-1]
 gi|301643431|ref|ZP_07243479.1| ribosomal protein S1 [Escherichia coli MS 146-1]
 gi|306812636|ref|ZP_07446829.1| 30S ribosomal protein S1 [Escherichia coli NC101]
 gi|307137540|ref|ZP_07496896.1| 30S ribosomal protein S1 [Escherichia coli H736]
 gi|307311702|ref|ZP_07591342.1| ribosomal protein S1 [Escherichia coli W]
 gi|309795105|ref|ZP_07689525.1| ribosomal protein S1 [Escherichia coli MS 145-7]
 gi|312969023|ref|ZP_07783230.1| ribosomal protein S1 [Escherichia coli 2362-75]
 gi|312971039|ref|ZP_07785218.1| ribosomal protein S1 [Escherichia coli 1827-70]
 gi|331641437|ref|ZP_08342572.1| ribosomal protein S1 [Escherichia coli H736]
 gi|331646176|ref|ZP_08347279.1| ribosomal protein S1 [Escherichia coli M605]
 gi|331651931|ref|ZP_08352950.1| ribosomal protein S1 [Escherichia coli M718]
 gi|331662324|ref|ZP_08363247.1| ribosomal protein S1 [Escherichia coli TA143]
 gi|331667288|ref|ZP_08368153.1| ribosomal protein S1 [Escherichia coli TA271]
 gi|331672450|ref|ZP_08373240.1| ribosomal protein S1 [Escherichia coli TA280]
 gi|331676699|ref|ZP_08377395.1| ribosomal protein S1 [Escherichia coli H591]
 gi|331682418|ref|ZP_08383037.1| ribosomal protein S1 [Escherichia coli H299]
 gi|332282184|ref|ZP_08394597.1| ribosomal protein S1 [Shigella sp. D9]
 gi|84028225|sp|P0AG69|RS1_ECO57 RecName: Full=30S ribosomal protein S1
 gi|84028226|sp|P0AG68|RS1_ECOL6 RecName: Full=30S ribosomal protein S1
 gi|84028227|sp|P0AG67|RS1_ECOLI RecName: Full=30S ribosomal protein S1
 gi|84028228|sp|P0AG70|RS1_SHIFL RecName: Full=30S ribosomal protein S1
 gi|12514077|gb|AAG55396.1|AE005280_7 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           EDL933]
 gi|26107336|gb|AAN79519.1|AE016758_123 30S ribosomal protein S1 [Escherichia coli CFT073]
 gi|1651439|dbj|BAA35655.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K12 substr.
           W3110]
 gi|1787140|gb|AAC73997.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. MG1655]
 gi|13360453|dbj|BAB34417.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           Sakai]
 gi|24051180|gb|AAN42537.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 301]
 gi|30040692|gb|AAP16423.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 2457T]
 gi|73854945|gb|AAZ87652.1| 30S ribosomal subunit protein S1 [Shigella sonnei Ss046]
 gi|81246061|gb|ABB66769.1| 30S ribosomal subunit protein S1 [Shigella boydii Sb227]
 gi|91071586|gb|ABE06467.1| 30S ribosomal subunit protein S1 [Escherichia coli UTI89]
 gi|110342700|gb|ABG68937.1| 30S ribosomal protein S1 [Escherichia coli 536]
 gi|110614467|gb|ABF03134.1| 30S ribosomal subunit protein S1 [Shigella flexneri 5 str. 8401]
 gi|115512253|gb|ABJ00328.1| RpsA [Escherichia coli APEC O1]
 gi|157066113|gb|ABV05368.1| ribosomal protein S1 [Escherichia coli HS]
 gi|157078847|gb|ABV18555.1| ribosomal protein S1 [Escherichia coli E24377A]
 gi|169755615|gb|ACA78314.1| ribosomal protein S1 [Escherichia coli ATCC 8739]
 gi|169888404|gb|ACB02111.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170121818|gb|EDS90749.1| ribosomal protein S1 [Escherichia albertii TW07627]
 gi|170520409|gb|ACB18587.1| ribosomal protein S1 [Escherichia coli SMS-3-5]
 gi|187430111|gb|ACD09385.1| ribosomal protein S1 [Shigella boydii CDC 3083-94]
 gi|188014741|gb|EDU52863.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
 gi|188488831|gb|EDU63934.1| ribosomal protein S1 [Escherichia coli 53638]
 gi|189355943|gb|EDU74362.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
 gi|189366807|gb|EDU85223.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
 gi|189372760|gb|EDU91176.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
 gi|189376455|gb|EDU94871.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
 gi|190907581|gb|EDV67176.1| ribosomal protein S1 [Escherichia coli F11]
 gi|192927716|gb|EDV82331.1| ribosomal protein S1 [Escherichia coli E22]
 gi|192955954|gb|EDV86422.1| ribosomal protein S1 [Escherichia coli E110019]
 gi|194413618|gb|EDX29899.1| ribosomal protein S1 [Escherichia coli B171]
 gi|194422382|gb|EDX38382.1| ribosomal protein S1 [Escherichia coli 101-1]
 gi|208732123|gb|EDZ80811.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
 gi|208738290|gb|EDZ85973.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
 gi|209158872|gb|ACI36305.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
 gi|209774868|gb|ACI85746.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774870|gb|ACI85747.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774872|gb|ACI85748.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774874|gb|ACI85749.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209774876|gb|ACI85750.1| 30S ribosomal subunit protein S1 [Escherichia coli]
 gi|209911420|dbj|BAG76494.1| 30S ribosomal protein S1 [Escherichia coli SE11]
 gi|215264108|emb|CAS08452.1| 30S ribosomal subunit protein S1 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322591|gb|EEC31015.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
 gi|218351116|emb|CAU96820.1| 30S ribosomal subunit protein S1 [Escherichia coli 55989]
 gi|218360266|emb|CAQ97816.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI1]
 gi|218364585|emb|CAR02271.1| 30S ribosomal subunit protein S1 [Escherichia coli S88]
 gi|218370556|emb|CAR18363.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI39]
 gi|218426315|emb|CAR07140.1| 30S ribosomal subunit protein S1 [Escherichia coli ED1a]
 gi|218431435|emb|CAR12313.1| 30S ribosomal subunit protein S1 [Escherichia coli UMN026]
 gi|222032642|emb|CAP75381.1| 30S ribosomal protein S1 [Escherichia coli LF82]
 gi|226898311|gb|EEH84570.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
 gi|227838876|gb|EEJ49342.1| 30S ribosomal protein S1 [Escherichia coli 83972]
 gi|238859783|gb|ACR61781.1| 30S ribosomal subunit protein S1 [Escherichia coli BW2952]
 gi|242376726|emb|CAQ31439.1| 30S ribosomal subunit protein S1, subunit of 30S ribosomal subunit
           and ribosome [Escherichia coli BL21(DE3)]
 gi|253325104|gb|ACT29706.1| ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972926|gb|ACT38597.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
 gi|253977140|gb|ACT42810.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
 gi|254591510|gb|ACT70871.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752851|dbj|BAI24353.1| 30S ribosomal subunit protein S1 [Escherichia coli O26:H11 str.
           11368]
 gi|257758308|dbj|BAI29805.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
           12009]
 gi|257763439|dbj|BAI34934.1| 30S ribosomal subunit protein S1 [Escherichia coli O111:H- str.
           11128]
 gi|260449943|gb|ACX40365.1| ribosomal protein S1 [Escherichia coli DH1]
 gi|281178042|dbj|BAI54372.1| 30S ribosomal protein S1 [Escherichia coli SE15]
 gi|281600271|gb|ADA73255.1| 30S ribosomal protein S1 [Shigella flexneri 2002017]
 gi|284920762|emb|CBG33825.1| 30S ribosomal protein S1 [Escherichia coli 042]
 gi|290761785|gb|ADD55746.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
 gi|291324027|gb|EFE63449.1| 30S ribosomal protein S1 [Escherichia coli B088]
 gi|291428802|gb|EFF01827.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
 gi|291434249|gb|EFF07222.1| 30S ribosomal protein S1 [Escherichia coli B185]
 gi|291469756|gb|EFF12240.1| 30S ribosomal protein S1 [Escherichia coli B354]
 gi|294493114|gb|ADE91870.1| ribosomal protein S1 [Escherichia coli IHE3034]
 gi|298279694|gb|EFI21202.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
 gi|299881246|gb|EFI89457.1| ribosomal protein S1 [Escherichia coli MS 196-1]
 gi|300300289|gb|EFJ56674.1| ribosomal protein S1 [Escherichia coli MS 185-1]
 gi|300306973|gb|EFJ61493.1| ribosomal protein S1 [Escherichia coli MS 200-1]
 gi|300317664|gb|EFJ67448.1| ribosomal protein S1 [Escherichia coli MS 175-1]
 gi|300354952|gb|EFJ70822.1| ribosomal protein S1 [Escherichia coli MS 198-1]
 gi|300397275|gb|EFJ80813.1| ribosomal protein S1 [Escherichia coli MS 69-1]
 gi|300405072|gb|EFJ88610.1| ribosomal protein S1 [Escherichia coli MS 84-1]
 gi|300409641|gb|EFJ93179.1| ribosomal protein S1 [Escherichia coli MS 45-1]
 gi|300411990|gb|EFJ95300.1| ribosomal protein S1 [Escherichia coli MS 115-1]
 gi|300418481|gb|EFK01792.1| ribosomal protein S1 [Escherichia coli MS 182-1]
 gi|300450875|gb|EFK14495.1| ribosomal protein S1 [Escherichia coli MS 116-1]
 gi|300462443|gb|EFK25936.1| ribosomal protein S1 [Escherichia coli MS 187-1]
 gi|300523851|gb|EFK44920.1| ribosomal protein S1 [Escherichia coli MS 119-7]
 gi|300530337|gb|EFK51399.1| ribosomal protein S1 [Escherichia coli MS 107-1]
 gi|300842320|gb|EFK70080.1| ribosomal protein S1 [Escherichia coli MS 124-1]
 gi|300846705|gb|EFK74465.1| ribosomal protein S1 [Escherichia coli MS 78-1]
 gi|301078145|gb|EFK92951.1| ribosomal protein S1 [Escherichia coli MS 146-1]
 gi|305853399|gb|EFM53838.1| 30S ribosomal protein S1 [Escherichia coli NC101]
 gi|306908257|gb|EFN38756.1| ribosomal protein S1 [Escherichia coli W]
 gi|307552750|gb|ADN45525.1| 30S ribosomal protein [Escherichia coli ABU 83972]
 gi|307627662|gb|ADN71966.1| 30S ribosomal protein S1 [Escherichia coli UM146]
 gi|308121409|gb|EFO58671.1| ribosomal protein S1 [Escherichia coli MS 145-7]
 gi|309701187|emb|CBJ00487.1| 30S ribosomal protein S1 [Escherichia coli ETEC H10407]
 gi|310336800|gb|EFQ01967.1| ribosomal protein S1 [Escherichia coli 1827-70]
 gi|312286425|gb|EFR14338.1| ribosomal protein S1 [Escherichia coli 2362-75]
 gi|312945431|gb|ADR26258.1| 30S ribosomal protein S1 [Escherichia coli O83:H1 str. NRG 857C]
 gi|313650850|gb|EFS15251.1| ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
 gi|315060196|gb|ADT74523.1| 30S ribosomal subunit protein S1 [Escherichia coli W]
 gi|315135559|dbj|BAJ42718.1| 30S ribosomal protein S1 [Escherichia coli DH1]
 gi|315257952|gb|EFU37920.1| ribosomal protein S1 [Escherichia coli MS 85-1]
 gi|315287526|gb|EFU46937.1| ribosomal protein S1 [Escherichia coli MS 110-3]
 gi|315291242|gb|EFU50602.1| ribosomal protein S1 [Escherichia coli MS 153-1]
 gi|315296193|gb|EFU55501.1| ribosomal protein S1 [Escherichia coli MS 16-3]
 gi|315619105|gb|EFU99685.1| ribosomal protein S1 [Escherichia coli 3431]
 gi|320173252|gb|EFW48461.1| SSU ribosomal protein S1p [Shigella dysenteriae CDC 74-1112]
 gi|320182021|gb|EFW56926.1| SSU ribosomal protein S1p [Shigella boydii ATCC 9905]
 gi|320192603|gb|EFW67244.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. EC1212]
 gi|320196595|gb|EFW71218.1| SSU ribosomal protein S1p [Escherichia coli WV_060327]
 gi|320202307|gb|EFW76878.1| SSU ribosomal protein S1p [Escherichia coli EC4100B]
 gi|320637779|gb|EFX07571.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. G5101]
 gi|320642904|gb|EFX12105.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. 493-89]
 gi|320648361|gb|EFX17016.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. H 2687]
 gi|320653677|gb|EFX21751.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320659822|gb|EFX27378.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664291|gb|EFX31442.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. LSU-61]
 gi|323157202|gb|EFZ43325.1| ribosomal protein S1 [Escherichia coli EPECa14]
 gi|323159537|gb|EFZ45517.1| ribosomal protein S1 [Escherichia coli E128010]
 gi|323165378|gb|EFZ51165.1| ribosomal protein S1 [Shigella sonnei 53G]
 gi|323174988|gb|EFZ60603.1| ribosomal protein S1 [Escherichia coli LT-68]
 gi|323175466|gb|EFZ61061.1| ribosomal protein S1 [Escherichia coli 1180]
 gi|323185383|gb|EFZ70747.1| ribosomal protein S1 [Escherichia coli 1357]
 gi|323190731|gb|EFZ76000.1| ribosomal protein S1 [Escherichia coli RN587/1]
 gi|323379244|gb|ADX51512.1| ribosomal protein S1 [Escherichia coli KO11]
 gi|323938017|gb|EGB34279.1| ribosomal protein S1 [Escherichia coli E1520]
 gi|323942827|gb|EGB38992.1| ribosomal protein S1 [Escherichia coli E482]
 gi|323947300|gb|EGB43308.1| ribosomal protein S1 [Escherichia coli H120]
 gi|323953382|gb|EGB49248.1| ribosomal protein S1 [Escherichia coli H252]
 gi|323958216|gb|EGB53925.1| ribosomal protein S1 [Escherichia coli H263]
 gi|323962903|gb|EGB58477.1| ribosomal protein S1 [Escherichia coli H489]
 gi|323967158|gb|EGB62582.1| ribosomal protein S1 [Escherichia coli M863]
 gi|323973214|gb|EGB68406.1| ribosomal protein S1 [Escherichia coli TA007]
 gi|323976702|gb|EGB71790.1| ribosomal protein S1 [Escherichia coli TW10509]
 gi|324009837|gb|EGB79056.1| ribosomal protein S1 [Escherichia coli MS 57-2]
 gi|324012971|gb|EGB82190.1| ribosomal protein S1 [Escherichia coli MS 60-1]
 gi|324019080|gb|EGB88299.1| ribosomal protein S1 [Escherichia coli MS 117-3]
 gi|324117224|gb|EGC11132.1| ribosomal protein S1 [Escherichia coli E1167]
 gi|326338194|gb|EGD62023.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1125]
 gi|326346171|gb|EGD69909.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1044]
 gi|327253701|gb|EGE65330.1| ribosomal protein S1 [Escherichia coli STEC_7v]
 gi|330910691|gb|EGH39201.1| SSU ribosomal protein S1p [Escherichia coli AA86]
 gi|331038235|gb|EGI10455.1| ribosomal protein S1 [Escherichia coli H736]
 gi|331044928|gb|EGI17055.1| ribosomal protein S1 [Escherichia coli M605]
 gi|331050209|gb|EGI22267.1| ribosomal protein S1 [Escherichia coli M718]
 gi|331060746|gb|EGI32710.1| ribosomal protein S1 [Escherichia coli TA143]
 gi|331065644|gb|EGI37537.1| ribosomal protein S1 [Escherichia coli TA271]
 gi|331070356|gb|EGI41721.1| ribosomal protein S1 [Escherichia coli TA280]
 gi|331075388|gb|EGI46686.1| ribosomal protein S1 [Escherichia coli H591]
 gi|331080049|gb|EGI51228.1| ribosomal protein S1 [Escherichia coli H299]
 gi|332091768|gb|EGI96847.1| ribosomal protein S1 [Shigella dysenteriae 155-74]
 gi|332093268|gb|EGI98328.1| ribosomal protein S1 [Shigella boydii 5216-82]
 gi|332093334|gb|EGI98392.1| ribosomal protein S1 [Shigella boydii 3594-74]
 gi|332104536|gb|EGJ07882.1| ribosomal protein S1 [Shigella sp. D9]
 gi|332342354|gb|AEE55688.1| ribosomal protein RpsA [Escherichia coli UMNK88]
 gi|332758996|gb|EGJ89306.1| ribosomal protein S1 [Shigella flexneri 4343-70]
 gi|332760108|gb|EGJ90406.1| ribosomal protein S1 [Shigella flexneri 2747-71]
 gi|332762680|gb|EGJ92943.1| ribosomal protein S1 [Shigella flexneri K-671]
 gi|332767858|gb|EGJ98048.1| ribosomal protein S1 [Shigella flexneri 2930-71]
 gi|333006352|gb|EGK25860.1| ribosomal protein S1 [Shigella flexneri VA-6]
 gi|333007009|gb|EGK26504.1| ribosomal protein S1 [Shigella flexneri K-218]
 gi|333008889|gb|EGK28349.1| ribosomal protein S1 [Shigella flexneri K-272]
 gi|333020060|gb|EGK39331.1| ribosomal protein S1 [Shigella flexneri K-304]
 gi|333020199|gb|EGK39469.1| ribosomal protein S1 [Shigella flexneri K-227]
          Length = 557

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|225439090|ref|XP_002268493.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 1219

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+VK
Sbjct: 263 EPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVK 322

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++    + K+ LSM+ VDQNTG+ ++
Sbjct: 323 VISVSGQ-KLSLSMRDVDQNTGRDLI 347


>gi|292492661|ref|YP_003528100.1| ribosomal protein S1 [Nitrosococcus halophilus Nc4]
 gi|291581256|gb|ADE15713.1| ribosomal protein S1 [Nitrosococcus halophilus Nc4]
          Length = 560

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D+S  E  +  +  +      G T +  +        N +  A + A+     +  ++  
Sbjct: 59  DLSISEGDVVEVALESVEDGFGETRLSHEKAKAARVWNELEKAFEAAETVTGMLTGKVKG 118

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +     +  F P   +   P      + G   +     +++    +       V   +
Sbjct: 119 GFTVDLSGVRAFLPGSLVDVRPVRDTAYLEGKELEFKLIKLDRRRNNI------VVSRRA 172

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              AE  A RE + S     E  K  KG V  + D+GAFV   G  DGL+HI+ +S +R+
Sbjct: 173 VMEAEYSAEREALLSS---LEEGKTVKGIVKNLTDYGAFVDL-GGLDGLLHITDMSWKRI 228

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
              S+VV  GD + V++L FD +R ++ L +K + ++  K + 
Sbjct: 229 KHPSEVVNIGDEITVQVLKFDKERQRVSLGLKQMGEDPWKDLA 271



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQV 627
              ++     VNI D+ TV++               +   +  + +      N    G+V
Sbjct: 225 WKRIKHPSEVVNIGDEITVQVLKFDKERQRVSLGLKQMGEDPWKDLARRYPDNTRLFGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             V D+G FV      +GLVH+S++    +    S +V+ GD V V +LD D +R +I L
Sbjct: 285 TNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKIVQVGDEVEVMVLDIDEERRRISL 344

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 345 GMKQCQPNPWEE 356



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  V   G  V      +G +  S++S ER+      +  GD +  K    D + 
Sbjct: 453 IVKGIVKVVDAKGVVVELAEGVEGHLRASEISRERIDDARSFLNVGDEIEAKFTGIDRKN 512

Query: 682 K-IKLSMKVVD 691
           + I +S++  D
Sbjct: 513 RVITISIRAKD 523


>gi|238920345|ref|YP_002933860.1| 30S ribosomal protein S1 [Edwardsiella ictaluri 93-146]
 gi|238869914|gb|ACR69625.1| ribosomal protein S1, putative [Edwardsiella ictaluri 93-146]
          Length = 557

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETQLSREKAKRHEAWLMLEKAYEDAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYISLNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            GD V  K    D + + + LS++  D+   K 
Sbjct: 497 VGDEVEAKFTGVDRKNRVVSLSVRAKDEAEEKD 529



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|54778754|gb|AAV39588.1| ribosomal protein S1 [synthetic construct]
          Length = 584

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 90  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 149

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 150 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 201

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 202 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 259

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 260 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 295



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 461 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 520

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 521 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 555



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 221 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 275

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 276 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 335

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 336 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 391

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 392 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 450

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 451 ERISLGVKQLAEDP 464



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 246 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 305

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 306 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 365

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 366 ISLGLKQCKANPWQ 379


>gi|331002776|ref|ZP_08326290.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413265|gb|EGG92633.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 232

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            ++    L +    ++ I   +         ++  F P  ++     + +   +G   +V
Sbjct: 31  WDVFEKMLTEKTVSKVKITEVVKGGCIAFLEEVRAFIPASQLSTQYVENLDEFLGKSLEV 90

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I          +  +      + S    E E A++  ++  D  +V  + +G+V  + D+
Sbjct: 91  I---------VITAEPAKKKLVLSHRAIEKEEAKKERQAKFDSVKVGDVLEGKVDSIKDY 141

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GAF+       GL+H+SQ+S +RV   + V+KEG+TV VK+    D GKI LS K +++N
Sbjct: 142 GAFIDLGDGISGLLHVSQISNQRVKNPAAVLKEGETVKVKVTGIKD-GKISLSKKALEEN 200


>gi|255067151|ref|ZP_05319006.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
 gi|255048519|gb|EET43983.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
          Length = 561

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMINSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-IIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 245 KVLKFDQDKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEE 357



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D               A        +  
Sbjct: 317 VHPSK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC---QANPWEEFAANHN 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 364 KGDKI-SGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAG--EEAVRKYKKGEEVEAVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D D+ +I L +K ++ + 
Sbjct: 421 LAIDVDKERISLGIKQLEGDP 441



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I+LS+K  D    + 
Sbjct: 514 RSIRLSVKAKDAKENRE 530


>gi|325289809|ref|YP_004265990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965210|gb|ADY55989.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 662

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  A +  +  +   +  +   L    L +  F P      I PD + ++    G+ 
Sbjct: 374 REVLAKAAETKEEIQAVAVEVVKGGLLV-DLGMRGFVPAS---QIQPDFVADLNQFVGQT 429

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMD 632
           +R  + +        D+G  K+  S  A +   RE  +       +   + +G V ++ D
Sbjct: 430 LRLRIIEF-------DEGKKKLVLSQKAILAEEREQEKEKLFATIKEGDVVQGVVRRLTD 482

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           FGAF+   G  DGL+H+S ++  RV+  SD+V  GD V V+++  D  +G+I L +K + 
Sbjct: 483 FGAFIDL-GGVDGLLHVSDMAFSRVSNPSDIVNIGDEVEVQIISVDQSKGRISLGLKQLK 541

Query: 692 QNTG 695
            N  
Sbjct: 542 TNPW 545



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I  I ++   ++   D    +I  S   +        ++ T  P  + + + +VV++  F
Sbjct: 512 IVNIGDEVEVQIISVDQSKGRI--SLGLKQLKTNPWDQAGTKYPVGSTV-QAKVVRIAVF 568

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GAFV      D L+HISQL+  RV K  +VVK GD +  K+++   +  +I LS++ +
Sbjct: 569 GAFVQLEDGIDALIHISQLADRRVGKVDEVVKIGDVIEAKIIECKPEEKRISLSIREL 626



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLV 647
           +   K  S  L   +    M      +PE+ +  + KG VVK+     +V      +G++
Sbjct: 265 EEVYKRMSEILENKDNEETMENFEGSLPELYRGALVKGTVVKMTHDEVYVDISWKSEGVI 324

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPIV 699
              +LS  R  +  +VVK GD + V +L   ++ G   LS +  ++   + ++
Sbjct: 325 PQGELSAVRGTRPEEVVKLGDEIEVVVLRLENEDGHPVLSKRRANEIKAREVL 377


>gi|310796591|gb|EFQ32052.1| helicase associated domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 1198

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 17/125 (13%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            +      + +DDG  +            R     + D P+++KIY G V  + DFGAFV
Sbjct: 200 QKSRRRNYDDEDDGRFR------------RAPEPEVDDAPQLHKIYGGHVTGIKDFGAFV 247

Query: 638 HFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           +  G R   DGLVHIS+L   +RV   SD++ +G  VWVK++   +  +I LSMK VDQ 
Sbjct: 248 NIHGVRGKVDGLVHISRLVDGQRVNHPSDLLTKGQEVWVKVVSM-EGNRIGLSMKEVDQE 306

Query: 694 TGKPI 698
           TG  +
Sbjct: 307 TGLDL 311


>gi|226293915|gb|EEH49335.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Paracoccidioides brasiliensis Pb18]
          Length = 1224

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVH 648
             K  S    E    R     + D P + KIY G+V  + DFGAFV+  G R   DGLVH
Sbjct: 227 GRKRRSDRDDEEFFRRPPTPELDDQPILFKIYDGRVTGLKDFGAFVNLQGVRGKVDGLVH 286

Query: 649 ISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +S +    RV   SD+V +G  V VK++      +I LSMK VDQ TG+ +V
Sbjct: 287 VSAMQDGARVNHPSDLVSKGQPVKVKVISIQGS-RIGLSMKEVDQVTGRDLV 337


>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
 gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
          Length = 487

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++L+ D +R ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLEVDLNRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L++  +     +V   
Sbjct: 280 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELASRHIDVPDQIVSVD 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EQVMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|307245600|ref|ZP_07527686.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254556|ref|ZP_07536390.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307259010|ref|ZP_07540741.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306853302|gb|EFM85521.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862493|gb|EFM94453.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867034|gb|EFM98891.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 567

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 36  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 95

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 96  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 155

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E   +  G
Sbjct: 156 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGF-VVTG 209

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 210 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 268

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 269 LGLKQLGQDPWAAIA 283



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 365 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 422

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 423 KGDEVEAVVLQVDAVKERISLGIKQLESDP 452



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 276 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 335

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 336 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 367



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G+VV+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 451 DPFTNFVESTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITTVISAG 510

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 511 DTIEAKYTGVDRKARVVNLSVRAKDE 536


>gi|94733276|emb|CAK04297.1| novel protein similar to mouse and human exosome component 5
           (EXOSC5) [Danio rerio]
          Length = 222

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 17/230 (7%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R    +R+  ++  LL R  GSS F++GDT  +  V  G  E                  
Sbjct: 9   RSCPVLREYGSEQSLLSRPDGSSTFVQGDTSILAGV-YGPAEV------------KVSKE 55

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
            Y+          +MG PS RE    +  R      L  T     +L ++ ++   DGS 
Sbjct: 56  IYDRATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSL 115

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
               +  + +ALMDAG+P+S+    +   + K+G    I++D +  ++         A  
Sbjct: 116 LSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQ---IITDPTARQEKESRALLTFAID 172

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            +    + M    G  S   +   +  +++    I       +     ++
Sbjct: 173 SNE-RNVLMSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRRYSKM 221



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 24/204 (11%)

Query: 28  DGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T +LA V     +   K+  D   + V  Q +                 P
Sbjct: 28  DGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKM--------------GLP 73

Query: 85  TENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +  E    + +  +     L +   ++   VI+ V+ HD + S     + AA  ALM +G
Sbjct: 74  SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVV-HD-DGSLLSCCLNAACMALMDAG 131

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDED-QGSLDLFVSG-TQDAVLMVELEANQLSEDV 199
           LP               GQ + +P   ++ +    L  +  + +  +++       S   
Sbjct: 132 LPMSRLFCSVTCAISKEGQIITDPTARQEKESRALLTFAIDSNERNVLMSSTTGSFSVQE 191

Query: 200 VLDAIIFGHNECKPVIEAISKLAK 223
           +   I       + + +      K
Sbjct: 192 LQQCIAISQKASEQIFQFYRDSVK 215


>gi|294670875|ref|ZP_06735731.1| hypothetical protein NEIELOOT_02579 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307362|gb|EFE48605.1| hypothetical protein NEIELOOT_02579 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 578

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 112/285 (39%), Gaps = 18/285 (6%)

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           L     F   L   S + E +       +    +A+ D  V ++   AG+    + D ++
Sbjct: 17  LANMENFAQLLEEYSAVQEMNQGEV---ITAEVVAITDKHVIVN---AGLKSESLIDINE 70

Query: 473 FIILS-DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           F  L  ++         +  +      G T +  +          +  A++        I
Sbjct: 71  FKNLQGEVEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGLI 130

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
             ++   L+     +  F P   +   P   I++     GK I   V +   K N     
Sbjct: 131 NGKVKGGLTVMINSIRAFLPGSLLDVRP---IKDTSHFEGKEIEFKVIKLDKKRN----- 182

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E     E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ 
Sbjct: 183 NVVVSRRAVLEATLGEERKALLENLQEG-TVVKGIVKNITDYGAFVDL-GGIDGLLHITD 240

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           L+  RV   S+V++ G  V  K+L FD D+ ++ L +K + ++  
Sbjct: 241 LAWRRVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGIKQLGEDPW 285



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 283 DPWSGLARRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 342

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N  + 
Sbjct: 343 GDEVEVMILEIDEDRRRISLGMKQCQANPWED 374



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D               A        +  
Sbjct: 334 VHPSK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC---QANPWEDFDANYN 380

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI KG V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 381 KGDKI-KGAVKSITDFGVFVGLPGNIDGLVHLSDLSWTETG--EEAVRKYKKGEEVETVV 437

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 438 LAIDVEKERISLGIKQLEGDP 458



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  + EGD V   ++  D + 
Sbjct: 471 LVKGTVKSVEAKGAVIVLGDEVEGYLPASEFAADRVEDLTTKLNEGDAVEAVIVTVDRKN 530

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 531 RSIKLSVKAKDAKESRD 547


>gi|292487830|ref|YP_003530705.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
 gi|292899057|ref|YP_003538426.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
 gi|291198905|emb|CBJ46015.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
 gi|291553252|emb|CBA20297.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
 gi|312171951|emb|CBX80208.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC BAA-2158]
          Length = 557

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIMVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYVSLNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASLDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +        +   +        +G++  + DFG F+   G  D
Sbjct: 333 LDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGID 388

Query: 645 GLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S    A   + V+E   GD +   +L  D +R +I L +K + ++ 
Sbjct: 389 GLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 265 DPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L +K    N  +
Sbjct: 325 GDVVEVMVLDIDEERRRISLGLKQCKSNPWQ 355


>gi|331005955|ref|ZP_08329301.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
 gi|330420250|gb|EGG94570.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
          Length = 560

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+  +      G T +  +      +  ++  A    +     I  ++    +    
Sbjct: 66  DEVHVALESVEDGFGETKLSREKAKRAEAWKVLESAHAAEEVMTGVINGKVKGGFTVDVA 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVMETA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  K  KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREELLATLEEGAKA-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + V++L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEIDVRVLKFDRERNRVSLGLKQLGEDPWVEI 270



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT+   V    K  V  + D+G F       +GLVH+S++    +    S VV  
Sbjct: 265 DPWVEITNRYPVGAKAKAVVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVDL 324

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           GD V V +L+ D+ R +I L +K   +N  
Sbjct: 325 GDEVEVMVLEIDEGRRRISLGIKQCQENPW 354



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 91/260 (35%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
             A G+VK+  D+    D+ G +   H+  M +K     S I  +        I   ++ 
Sbjct: 193 AKAKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVG-----DEIDVRVLK 247

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +  +++    P           + +      I  G + 
Sbjct: 248 F-----DRERNRVSLGLKQLGEDPWVEITNRYPVGAKAKAVVTNLTDYGCFAEIEEGVEG 302

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      NI     V +       +    E                  +     +
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVDLGDEVEVMVLEIDEGRRRISLGIKQCQENPWDAFGSRFQ 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 G++  + DFG F+   G  DGLVH+S +S        + V   K+GD +   +L
Sbjct: 363 KGDKISGKIKSITDFGIFLGLDGGIDGLVHLSDISWTDTG--EEAVRNYKKGDDLETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K +++++
Sbjct: 421 AVDPERERISLGIKQLEEDS 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V +V   GA V      +G + +S+LS E+V   S V+  GD V V + + D + 
Sbjct: 453 IVNGTVKEVDAKGAVVTLAEDVEGYLKVSELSREKVEDASTVLSVGDAVEVVITNVDSKN 512

Query: 682 K-IKLS 686
           + I LS
Sbjct: 513 RSIALS 518


>gi|308231891|ref|ZP_07414153.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308369488|ref|ZP_07417965.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308375631|ref|ZP_07444575.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308376775|ref|ZP_07439993.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308377781|ref|ZP_07480385.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308378993|ref|ZP_07484583.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308380132|ref|ZP_07488808.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
 gi|308215731|gb|EFO75130.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308327429|gb|EFP16280.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308345717|gb|EFP34568.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308350016|gb|EFP38867.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308354653|gb|EFP43504.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308358609|gb|EFP47460.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308362535|gb|EFP51386.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
          Length = 392

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 75  YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFG 134

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 135 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 193

Query: 694 TGK 696
             +
Sbjct: 194 PWR 196



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 193 DPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 252

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 253 DDAMVKVIDIDLERRRISLSLKQANED 279


>gi|225684289|gb|EEH22573.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
           [Paracoccidioides brasiliensis Pb03]
          Length = 1224

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLV 647
           G  K +     E    R     + D P + KIY G+V  + DFGAFV+  G R   DGLV
Sbjct: 227 GRKKRSDRDDEEFFR-RPPTPELDDQPILFKIYDGRVTGLKDFGAFVNLQGVRGKVDGLV 285

Query: 648 HISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           H+S +    RV   SD+V +G  V VK++      +I LSMK VDQ TG+ +V
Sbjct: 286 HVSAMQDGARVNHPSDLVSKGQPVKVKVISIQGS-RIGLSMKEVDQVTGRDLV 337


>gi|239917616|ref|YP_002957174.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
 gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
          Length = 485

 Score = 98.4 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      E  ++  G V  +++FG
Sbjct: 163 YIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 223 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQED 281

Query: 694 TGK 696
             +
Sbjct: 282 PWQ 284



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FGAFV      +GLVHIS+L++  +     VV   
Sbjct: 281 DPWQLFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVN 340

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 341 DELFVKVIDIDLERRRISLSLKQANE 366



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      +VV  GDTV   +L   D 
Sbjct: 36  DLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDK 95

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 96  EGRLILSKKRAQ 107


>gi|331654984|ref|ZP_08355983.1| protein YhgF [Escherichia coli M718]
 gi|331046999|gb|EGI19077.1| protein YhgF [Escherichia coli M718]
          Length = 773

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHSVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|28210090|ref|NP_781034.1| transcription accessory protein [Clostridium tetani E88]
 gi|28202526|gb|AAO34971.1| transcription accessory protein [Clostridium tetani E88]
          Length = 718

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 117/326 (35%), Gaps = 35/326 (10%)

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ----FPYTLRIVSEIT-ES 432
           Y+    AT E   +    R  I  GR  +  +  ++    +      Y   I  +   ES
Sbjct: 414 YSASELATEEYPDIDVSIRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDITPKKLDES 473

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
                   V    + L  A   +   V+GI  G+ K+         ++  E+        
Sbjct: 474 LRGVVEDCVNNVGVDLNTATPSLLAYVSGINSGIAKNI--------VAYREE-------- 517

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                   T+ +  +K+  +            +      L + + V  ES     E    
Sbjct: 518 ----KGKFTSRKELLKVKRLGAKAFEQCAGFLRVSESKELLDNTGVHPESYKVTKELIKT 573

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
           +   A    +   +  + G++    +++    ++I     + I           RE +  
Sbjct: 574 LNYSANDL-KCNKLEDIDGRIKNSDIDELAKNLDIGKPTLLDIIKELKKPGRDPREDLPK 632

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                 V  I          G V  V DFGAFV     +DGLVHIS+LS + V    DVV
Sbjct: 633 PIFKTGVIDINQLKPGMALTGTVRNVADFGAFVDIGVHQDGLVHISELSDKFVKHPLDVV 692

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKV 689
           K GD V V++L+ D+ RG+I LSMK 
Sbjct: 693 KVGDIVDVRVLEVDEKRGRISLSMKQ 718


>gi|269139520|ref|YP_003296221.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
 gi|267985181|gb|ACY85010.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
 gi|304559409|gb|ADM42073.1| SSU ribosomal protein S1p [Edwardsiella tarda FL6-60]
          Length = 557

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETQLSREKAKRHEAWLMLEKAYEDAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYISLNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            GD V  K    D + + + LS++  D+   K 
Sbjct: 497 VGDEVEAKFTGVDRKNRVVSLSVRAKDEAEEKD 529



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|317491458|ref|ZP_07949894.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921005|gb|EFV42328.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 559

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETQLSREKAKRHEAWITLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYISMNKKGVIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|330827877|ref|YP_004390829.1| paral putative RNase R [Aeromonas veronii B565]
 gi|328803013|gb|AEB48212.1| Paral putative RNase R [Aeromonas veronii B565]
          Length = 785

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + +G V  V +FGAFV     +DGLVHIS L+   V    +VVK GD V VK+L+ D 
Sbjct: 664 EMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVLEVDA 723

Query: 679 DRGKIKLSMKVVDQNTGKP 697
            R +I L+M+ +D+  G+P
Sbjct: 724 PRKRISLTMR-LDEKAGQP 741


>gi|294636910|ref|ZP_06715237.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
 gi|291089863|gb|EFE22424.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
          Length = 556

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETQLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYISLNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            GD V  K    D + + + LS++  D+   K 
Sbjct: 497 VGDEVEAKFTGVDRKNRVVSLSVRAKDEAEEKD 529



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|15615909|ref|NP_244213.1| general stress protein 13 [Bacillus halodurans C-125]
 gi|10175970|dbj|BAB07066.1| polyribonucleotide nucleotidyltransferase (general stress protein
           13) [Bacillus halodurans C-125]
          Length = 138

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAFV     + GLVHIS+++   V   +DV+  GD V VK+L  
Sbjct: 5   EVGSIVEGKVTGIKPFGAFVAIDDQKQGLVHISEVAHGFVKDINDVLSVGDEVKVKILSV 64

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           D+  GKI LS++   +   +P
Sbjct: 65  DEESGKISLSIRATQEAPERP 85


>gi|329120385|ref|ZP_08249052.1| 30S ribosomal protein S1 [Neisseria bacilliformis ATCC BAA-1200]
 gi|327462340|gb|EGF08666.1| 30S ribosomal protein S1 [Neisseria bacilliformis ATCC BAA-1200]
          Length = 559

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 23/260 (8%)

Query: 449 MDAGVPISKPVAGIA--MGLVKDGDDFIILSDISGDEDHLGHMDFKV----------AGT 496
           M+ G  I+  V  I     +V  G     L DI+  ++  G ++ KV             
Sbjct: 17  MNQGEVITAEVVAIEDKFVIVNAGLKSESLIDINEFKNMQGEVEVKVGDFVTVTIESVEN 76

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
             G T +  +          +  A++        I  ++   L+     +  F P   + 
Sbjct: 77  GFGETKLSREKAKRAADWIALEEAMENGDILSGLISGKVKGGLTVMINSIRAFLPGSLLD 136

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
             P   I++     GK I   V +   K N      V ++  ++ E     E    + ++
Sbjct: 137 VRP---IKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKALLENL 188

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L 
Sbjct: 189 QEG-TVVKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLK 246

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD D+ ++ L +K + ++  
Sbjct: 247 FDQDKQRVSLGVKQLGEDPW 266



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWNGLARRYPAGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD   V +L+ D DR +I L MK    N  + 
Sbjct: 324 GDEAEVMILEIDEDRRRISLGMKQCQANPWED 355



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +                     KG V  + DFG FV   G  D
Sbjct: 332 LEIDEDRRRISLGMKQCQAN----PWEDFAANYNKGDKIKGAVKSITDFGVFVGLPGNID 387

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 388 GLVHLSDLSWSEAG--EEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGTVKSVEAKGAVVALANEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVVITVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKENRE 528


>gi|261377757|ref|ZP_05982330.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
 gi|269146043|gb|EEZ72461.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
          Length = 561

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V GI      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVGIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMINSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 245 KVLKFDQDKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDESRRRISLGMKQCQANPWEE 357



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+                A        +  
Sbjct: 317 VHPSK---VVQLGDEVEVMILE-------IDESRRRISLGMKQC---QANPWEEFAANHN 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 364 KGDKI-SGAVKSITDFGIFVGLPGGIDGLVHLSDLSWTEAG--EEAVRKYKKGEEVEAVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 421 LAIDVEKERISLGIKQLEGDP 441



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVVSLSEEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I+LS+K  D    + 
Sbjct: 514 RSIRLSVKAKDAKENRE 530


>gi|152969495|ref|YP_001334604.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206580559|ref|YP_002239440.1| ribosomal protein S1 [Klebsiella pneumoniae 342]
 gi|238893967|ref|YP_002918701.1| 30S ribosomal protein S1 [Klebsiella pneumoniae NTUH-K2044]
 gi|262040990|ref|ZP_06014212.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936291|ref|YP_003440350.1| ribosomal protein S1 [Klebsiella variicola At-22]
 gi|290510654|ref|ZP_06550024.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
 gi|330014030|ref|ZP_08307846.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
 gi|150954344|gb|ABR76374.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206569617|gb|ACI11393.1| ribosomal protein S1 [Klebsiella pneumoniae 342]
 gi|238546283|dbj|BAH62634.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041684|gb|EEW42733.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288891000|gb|ADC59318.1| ribosomal protein S1 [Klebsiella variicola At-22]
 gi|289777370|gb|EFD85368.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
 gi|328533287|gb|EGF60039.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
          Length = 557

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYVALNKKGAIVVGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRVVSLSVRAKDEAEEKDAI 531



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|76799531|ref|ZP_00781663.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21]
 gi|76585115|gb|EAO61741.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21]
          Length = 466

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 334 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQ 393

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ + D  ++ LSMK +++   +
Sbjct: 394 EVTVKVLEVNSDAERVSLSMKALEERPAQ 422



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +E  A    + +    EV  +  G+V ++  F
Sbjct: 214 KFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSF 273

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 274 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTP 332

Query: 693 NTG 695
              
Sbjct: 333 GPW 335


>gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
          Length = 516

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 190 YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 249

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+SQLS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 250 AFVDL-GGVDGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQED 308

Query: 694 TGK 696
             +
Sbjct: 309 PWR 311



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 308 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 367

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
               VK++D D +R +I LS+K  D++
Sbjct: 368 QDAMVKVIDIDLERRRISLSLKQADED 394



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 63  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKEDK 122

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 123 EGRLILSKKRAQ 134


>gi|329894050|ref|ZP_08270035.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC3088]
 gi|328923222|gb|EGG30542.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC3088]
          Length = 771

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 575 RGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           R + EQ G     +I  +              A+ +         E   + +G V  V +
Sbjct: 601 RYVSEQFGLPTLQDIVRELEKPGRDPRPEFATASFKEGVEKISDLESGMVLEGTVTNVTN 660

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           FGAFV     +DGLVHIS L+ + V    DVVK G  V VK+++ D+ R +I LSM++ D
Sbjct: 661 FGAFVDVGVHQDGLVHISALADKFVKDPRDVVKAGQVVKVKVMEVDEGRKRIGLSMRMSD 720

Query: 692 QN 693
           + 
Sbjct: 721 EP 722


>gi|322694281|gb|EFY86115.1| ATP-dependent RNA helicase DHX8 [Metarhizium acridum CQMa 102]
          Length = 1196

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL-STERVAKTSD 662
           +     I D P++NK+Y+G V  V DFGAFV+     G  DGLVHIS++ + +RV   SD
Sbjct: 216 KAPYPEIDDAPKLNKVYQGHVTGVRDFGAFVNIHHVRGKVDGLVHISRIIAGQRVNHPSD 275

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++ +G  VWVK+    +  +I LSMK VDQ TG  +
Sbjct: 276 LLSKGQDVWVKVTSI-EGNRIGLSMKDVDQETGMDL 310


>gi|190150052|ref|YP_001968577.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263385|ref|ZP_07545001.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189915183|gb|ACE61435.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871263|gb|EFN02991.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 567

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 36  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 95

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 96  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 155

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + +  G
Sbjct: 156 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVTG 209

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 210 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 268

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 269 LGLKQLGQDPWAAIA 283



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 365 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 422

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 423 KGDEVEAVVLQVDAVKERISLGIKQLESDP 452



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 276 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 335

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 336 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 367



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G+VV+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 451 DPFTNFVESTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITTVISAG 510

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 511 DTIEAKYTGVDRKARVVNLSVRAKDE 536


>gi|152996867|ref|YP_001341702.1| 30S ribosomal protein S1 [Marinomonas sp. MWYL1]
 gi|150837791|gb|ABR71767.1| ribosomal protein S1 [Marinomonas sp. MWYL1]
          Length = 560

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 90/215 (41%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      + +++  A ++       I  ++    +    
Sbjct: 66  DEVKVALDAVEDGFGETKLSREKAKRAETWSVLEKAYEENAIVHGVINGKVKGGFTVDIA 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   + G  +   + +   K N      V ++  ++ E  
Sbjct: 126 NIRAFLPGSL---VDVRPIRDTSHLEGVDLEFKLIKLDQKRN-----NVVVSRRAVMEAT 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S+++
Sbjct: 178 NSAERETLLASLEEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEII 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 AVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +L
Sbjct: 275 PENTKV-TAKVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
           D D+ R +I L +K    N  + 
Sbjct: 334 DIDEERRRISLGIKQCTMNPWEE 356



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G  +  +V      ++ID++            +              
Sbjct: 316 IHPSKVVQI----GDEVEVMV------LDIDEERRRISLGIKQCTMN----PWEEFATSF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G +  + DFG F+   G  DGLVH+S LS +      + V   K+GD +   +
Sbjct: 362 NKGDKISGAIKSITDFGVFIGLDGGIDGLVHLSDLSWDETG--EEAVRQYKKGDMLETVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++++ 
Sbjct: 420 LSIDAERERISLGVKQLEEDP 440



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V +V   GA V      +  + +S++S ER+   +  +KEG
Sbjct: 439 DPFLAFVAENDKGTIVNGTVSEVDAKGAVVVLAEGVEATLKVSEISRERIEDATTALKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V   +++ D + + I LS+K  D    K
Sbjct: 499 DKVEAAIINVDRKARTITLSIKQKDATEEK 528


>gi|261855929|ref|YP_003263212.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2]
 gi|261836398|gb|ACX96165.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2]
          Length = 560

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 11/214 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +  +      G T +  +  +   +   +  + +  +     I  ++    +    ++
Sbjct: 71  VDVALESVEDGFGETKLSREKALRARAWTALEKSFKNEEIVTGRITGKVKGGFTVEMGEI 130

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    IR+   + GK +   + +   K N      V ++  ++ E E +
Sbjct: 131 RAFLPGSL---VDVRPIRDTTYLEGKDVEFKIIKLDQKRN-----NVVVSRRAVVEQEYS 182

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E   + +G V  + D+GAF+   G  DGL+HI+ ++ +RV   S+VV  
Sbjct: 183 AERDALLDQLQEG-MVLRGVVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSEVVNI 240

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD V VK+L FD DR ++ L MK + ++    + 
Sbjct: 241 GDEVDVKVLKFDRDRNRVSLGMKQMGEDPWSDLA 274



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYK 624
            +    V+     VNI D+  VK+               +   +    +     ++    
Sbjct: 225 DMAWKRVKHPSEVVNIGDEVDVKVLKFDRDRNRVSLGMKQMGEDPWSDLARRFPISSRMF 284

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +      VV  GD V V +LD D +R +
Sbjct: 285 GKVTNLTDYGCFVEIDNGVEGLVHVSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRR 344

Query: 683 IKLSMKVVDQNTG 695
           I L MK    N  
Sbjct: 345 ISLGMKQCQANPW 357



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           KI  G V +V   GA +      +G +  S +S +R+     V+KEGD V  K++  D +
Sbjct: 455 KIVNGTVREVDARGAVIDLGEGVEGYLRASDISRDRIDDARTVLKEGDAVEAKVMGVDRK 514

Query: 681 GK-IKLSMKVVD 691
            + + LS++  D
Sbjct: 515 NRMVSLSIRAKD 526



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 90/259 (34%), Gaps = 44/259 (16%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +       
Sbjct: 200 GVVKNLTDYGAFLDLGGIDGLLHITDMAWKRVKHPSEVVNIGDEVDVKVLKFD------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   M ++  +    L    P    M      + +      I  G + +  +
Sbjct: 253 ---RDRNRVSLGMKQMGEDPWSDLARRFPISSRMFGKVTNLTDYGCFVEIDNGVEGLVHV 309

Query: 578 VEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            E                        ++ID++           +         +     +
Sbjct: 310 SEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRRISLGMKQCQAN----PWDAFAASHQ 365

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLD 676
                 GQ+  + DFG F+   G  DGL+H+S LS     +   V   K+G+ +   ++ 
Sbjct: 366 KGDKVSGQIKSITDFGVFIGLDGGIDGLIHLSDLSWNEAGE-EAVRQFKKGEEIEAVVIA 424

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K ++ + 
Sbjct: 425 IDPERERISLGLKQLESDP 443


>gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6]
 gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 491

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++  G V  +++FG
Sbjct: 167 YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 285 DPWQTFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 345 DELFVKVIDIDLERRRISLSLKQANE 370



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      DVV  GD V   +L   D 
Sbjct: 40  DLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
          Length = 492

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++  G V  +++FG
Sbjct: 167 YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 285 DPWQTFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 345 DELFVKVIDIDLERRRISLSLKQANE 370



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      DVV  GD V   +L   D 
Sbjct: 40  DLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
           carboxydivorans Nor1]
 gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
           carboxydivorans Nor1]
          Length = 655

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +    + ++    G+ +  +       + ID      + S      +  +     +   
Sbjct: 406 QVAVQHVADLTPYVGQTLELL------PIEIDQAKQKIVLSRRKVLEQEQQRRAEELFSR 459

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               +I  G V ++ DFG FV   G  DGL+HIS LS  RV   ++VV  GD V V +  
Sbjct: 460 LAEGQIVTGTVSRIADFGVFVDL-GGVDGLIHISDLSWHRVKNPTEVVNIGDEVQVFVQK 518

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  +I LS+K V ++    +V
Sbjct: 519 VDPKAKRISLSLKRVQRDPWYDVV 542



 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIE-------AAREMIRSITDVPEVNKIYKGQV 627
              V+     VNI D+  V +                  R+    + +         G+V
Sbjct: 496 WHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLKRVQRDPWYDVVEGLREGMTVAGKV 555

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  FGAFV      +GLVH+S+L+  RVA   +VV+ G TV VK+L  D +  +I LS
Sbjct: 556 TKLAKFGAFVEVKPGVEGLVHLSELADRRVASAQEVVEVGQTVTVKILGIDKENKRISLS 615

Query: 687 MKVVDQNTGK 696
           +    Q+  +
Sbjct: 616 IAQAQQDAER 625



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           +++   +++       E   I KG+VV V     FV      +G++ +++L+       S
Sbjct: 271 KMQEFDQLLDQDMKPLEPGVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELAYPVPENAS 330

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLS 686
           DVV EGD + V +L  + D G +KLS
Sbjct: 331 DVVSEGDEIDVYVLAPEGDDGPVKLS 356


>gi|330719102|ref|ZP_08313702.1| SSU ribosomal protein S1P [Leuconostoc fallax KCTC 3537]
          Length = 395

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   K+   D+   +I+ S  A           + +      + +G V +V DFGAFV 
Sbjct: 244 EKVNVKILALDEEKGRISLSIKATQP---GPWDKVAEEAPAGTVLEGTVKRVKDFGAFVE 300

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
                +GL+H+SQ+S +RV   +DV+K GD V V++LD      +I LSMK +++   
Sbjct: 301 IFPGIEGLIHVSQISHKRVENPADVLKSGDKVKVQVLDVKPAEERISLSMKALEEKPA 358



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID   +  I S      +   E I  +     V ++ +G V ++ DFGAF+   G  D
Sbjct: 162 IEIDPAKSRLILSRKAVIAQEHAEKIAEVFGKLSVGEVVEGTVARLADFGAFIDL-GGVD 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH+S++S +RV   +DV+  G+ V VK+L  D ++G+I LS+K       
Sbjct: 221 GLVHVSEISYDRVKNPADVLSRGEKVNVKILALDEEKGRISLSIKATQPGPW 272



 Score = 37.2 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 612 SITDVPEVNKIYKGQVVKV-MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
              D  +V  +  G+VV +  D  A +      +G+V   + S +R    +D +K GDTV
Sbjct: 13  ESADQIKVGDVVTGEVVAIDNDNQAVIGLHTGEEGVVPAREYSDDRNINLADELKVGDTV 72

Query: 671 WVKLLD 676
              +++
Sbjct: 73  EAVVIN 78


>gi|254673142|emb|CBA07943.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha275]
 gi|316984099|gb|EFV63077.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
 gi|325132498|gb|EGC55191.1| ribosomal protein S1 [Neisseria meningitidis M6190]
 gi|325140474|gb|EGC62995.1| ribosomal protein S1 [Neisseria meningitidis CU385]
          Length = 589

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 43  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 102

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 103 SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPG 162

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 163 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 214

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 215 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 272

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 273 KVLKFDQEKQRVSLGMKQLGEDPW 296



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 294 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 353

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 354 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 385



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 365 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 421

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 422 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 469



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 482 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 541

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 542 RSIKLSVKAKDAKESRE 558


>gi|194098874|ref|YP_002001938.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
 gi|193934164|gb|ACF29988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
          Length = 584

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 38  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 97

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 98  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 157

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 158 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 209

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 210 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 267

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 268 KVLKFDQEKQRVSLGMKQLGEDPW 291



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 289 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 348

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 349 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 380



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 360 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 416

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 417 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 464



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 477 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 536

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 537 RSIKLSVKAKDAKESRE 553


>gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
          Length = 498

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 30/280 (10%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            S+A+ D G P    +A +   +    D  I+   +   +     +D     T+  I + 
Sbjct: 26  GSVAVDDLGSP-EAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGY-KTEGVIPSK 83

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------ 557
           ++ +K       ++ +  +     +     E   +LS+ R Q       +E +       
Sbjct: 84  ELSIKHDVDPFEVVNVGDEFEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVV 143

Query: 558 ------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASS 598
                 +    +   IG+ G +   +VE             +  AK+   D     +  S
Sbjct: 144 TGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS 203

Query: 599 SLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             A +E  + E+ ++     +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 204 RRAWLEQTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHI 262

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 263 DHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302



 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|307261748|ref|ZP_07543414.1| hypothetical protein appser12_13070 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868566|gb|EFN00377.1| hypothetical protein appser12_13070 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 779

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|307256763|ref|ZP_07538542.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306864811|gb|EFM96715.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 567

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 36  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 95

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 96  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 155

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + +  G
Sbjct: 156 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVTG 209

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 210 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 268

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 269 LGLKQLGQDPWAAIA 283



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 365 PWEHFAATHNKNDKVAGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 422

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 423 KGDEVEAVVLQVDAVKERISLGIKQLESDP 452



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 276 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 335

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 336 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 367



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G+VV+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 451 DPFTNFVESTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITTVISAG 510

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 511 DTIEAKYTGVDRKARVVNLSVRAKDE 536


>gi|307247720|ref|ZP_07529758.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307252296|ref|ZP_07534193.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307261206|ref|ZP_07542881.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306855750|gb|EFM87915.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306860218|gb|EFM92234.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306868937|gb|EFN00739.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 567

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 36  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 95

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 96  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 155

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + +  G
Sbjct: 156 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVTG 209

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 210 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 268

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 269 LGLKQLGQDPWAAIA 283



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 365 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 422

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 423 KGDEVEAVVLQVDAVKERISLGIKQLESDP 452



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 276 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 335

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 336 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 367



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G+VV+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 451 DPFTNFVESTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITTVISAG 510

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 511 DTIEAKYTGVDRKARVVNLSVRAKDE 536


>gi|126208738|ref|YP_001053963.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           L20]
 gi|126097530|gb|ABN74358.1| predicted transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 779

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|307249953|ref|ZP_07531925.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858013|gb|EFM90097.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 567

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 36  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 95

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 96  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 155

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + +  G
Sbjct: 156 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVTG 209

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 210 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 268

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 269 LGLKQLGQDPWAAIA 283



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 365 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 422

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 423 KGDEVEAVVLQVDAVKERISLGIKQLESDP 452



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 276 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 335

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 336 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 367



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G++V+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 451 DPFTNFVESTKKGAILTGKIVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITTVISAG 510

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 511 DTIEAKYTGVDRKARVVNLSVRAKDE 536


>gi|303250647|ref|ZP_07336844.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252904|ref|ZP_07534793.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650635|gb|EFL80794.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859693|gb|EFM91717.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 779

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|241758882|ref|ZP_04756995.1| ribosomal protein S1 [Neisseria flavescens SK114]
 gi|241321090|gb|EER57303.1| ribosomal protein S1 [Neisseria flavescens SK114]
          Length = 559

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V GI      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVGIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMINSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 243 KVLKFDQDKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDEDRRRISLGMKQCQANPWEE 355



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D               A        +  
Sbjct: 315 VHPSK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC---QANPWEEFAANHN 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 362 KGDKI-SGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAG--EEAVRKYKKGEEVEAVV 418

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 419 LAIDVEKERISLGIKQLEGDP 439



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVVALSEEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I+LS+K  D    + 
Sbjct: 512 RSIRLSVKAKDAKENRE 528


>gi|225075203|ref|ZP_03718402.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
           NRL30031/H210]
 gi|261380192|ref|ZP_05984765.1| ribosomal protein S1 [Neisseria subflava NJ9703]
 gi|319638403|ref|ZP_07993165.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
 gi|224953378|gb|EEG34587.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
           NRL30031/H210]
 gi|284797039|gb|EFC52386.1| ribosomal protein S1 [Neisseria subflava NJ9703]
 gi|317400152|gb|EFV80811.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
          Length = 561

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V GI      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVGIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMINSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 245 KVLKFDQDKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEDRRRISLGMKQCQANPWEE 357



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D               A        +  
Sbjct: 317 VHPSK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC---QANPWEEFAANHN 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 364 KGDKI-SGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAG--EEAVRKYKKGEEVEAVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 421 LAIDVEKERISLGIKQLEGDP 441



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVVALSEEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I+LS+K  D    + 
Sbjct: 514 RSIRLSVKAKDAKENRE 530


>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I +   AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|120553401|ref|YP_957752.1| RNA-binding S1 domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120323250|gb|ABM17565.1| RNA binding S1 domain protein [Marinobacter aquaeolei VT8]
          Length = 774

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 575 RGIVEQTG-AKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + EQ G   + +I  +              A  E      +  +   + +G V  V +
Sbjct: 604 DYVTEQFGLPTIKDIISELEKPGRDPRPEFRFAHFEEGVETLNDLKPGMVLEGSVTNVTN 663

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS   V    +VVK GD V VK+++ D  R +I LSM++ D
Sbjct: 664 FGAFVDIGVHQDGLVHISALSHTFVKDPREVVKAGDIVKVKVMEVDIPRKRIGLSMRMDD 723

Query: 692 QN 693
           Q 
Sbjct: 724 QP 725


>gi|295670043|ref|XP_002795569.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Paracoccidioides brasiliensis Pb01]
 gi|226284654|gb|EEH40220.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Paracoccidioides brasiliensis Pb01]
          Length = 1224

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHI 649
            K  S    E    R     + D P + KIY+G+V  + DFGAFV+  G R   DGLVH+
Sbjct: 228 RKRRSDRDDEEFFRRPPTPELDDQPILFKIYEGRVTGLKDFGAFVNLQGVRGKVDGLVHV 287

Query: 650 SQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           S +    RV   SD+V +G  V VK++      +I LSMK VDQ TG+ +V
Sbjct: 288 SAMQDGARVNHPSDLVSKGQPVKVKVVSIQGS-RIGLSMKEVDQVTGRDLV 337


>gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079782|gb|EEI17745.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 489

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKHRNNVVLSRRAYLEETQSAVRSDFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVQEGIEGLVHISELAQRHVEVPDQVVGVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           + V VK++D D +R +I LS+K  D++  + 
Sbjct: 340 EEVMVKVIDIDLERRRISLSLKQADEDYAEE 370



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G VVKV      +      +G++   +LS +      +VV+ GD V   +L   D 
Sbjct: 35  DIVTGTVVKVDHDEVLLDIGYKTEGVIPTRELSIKHDIDPDEVVEVGDEVDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I +   AK+   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS ++     +VV+ GDT+   ++   D 
Sbjct: 37  DLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|307246188|ref|ZP_07528270.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255169|ref|ZP_07536987.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259606|ref|ZP_07541331.1| hypothetical protein appser11_14050 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853123|gb|EFM85346.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862042|gb|EFM94018.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866542|gb|EFM98405.1| hypothetical protein appser11_14050 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 779

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|220927810|ref|YP_002504719.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
 gi|219998138|gb|ACL74739.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
          Length = 718

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 105/265 (39%), Gaps = 20/265 (7%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES G      V    + L  A  P+   V+GI+  + K+  ++   +      + L  + 
Sbjct: 470 ESLGGVVEDCVNNVGVDLNTASAPLLSYVSGISTAIAKNVVEYREENGKFKARNELKKVK 529

Query: 491 FKVAGTDSGITAMQMDMKIGGISEN--IMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
                T               I +N  +   + + AK     +   +  V ++    L  
Sbjct: 530 KLGNKTFEQCAGFLRITDGENILDNTSVHPESYKAAKLLLEKMGYSLEDVRAKKLSGLDN 589

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              +  +      +I   +G+G   ++ I+ E      +  D+    +  S +  +E   
Sbjct: 590 KVQQAGM-----SRIAEELGIGVPTLKDIINELLKPGRDPRDELPKPMLHSDVLHME--- 641

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +   I  G V  V DFGAFV     +DGLVHISQL+ + V    DVV  G
Sbjct: 642 --------DLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKYVKNPMDVVAVG 693

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V VK+L+ D +R +I L+MK ++
Sbjct: 694 DIVKVKILEVDVERKRISLTMKEIN 718


>gi|307132915|ref|YP_003884931.1| putative transcriptional accessory protein [Dickeya dadantii 3937]
 gi|306530444|gb|ADN00375.1| predicted transcriptional accessory protein [Dickeya dadantii 3937]
          Length = 781

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|113679482|ref|NP_001038817.1| exosome complex exonuclease RRP46 isoform 1 [Danio rerio]
 gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
 gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
          Length = 218

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 17/230 (7%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R    +R+  ++  LL R  GSS F++GDT  +  V  G  E                  
Sbjct: 5   RSCPVLREYGSEQSLLSRPDGSSTFVQGDTSILAGV-YGPAEV------------KVSKE 51

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
            Y+          +MG PS RE    +  R      L  T     +L ++ ++   DGS 
Sbjct: 52  IYDRATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSL 111

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
               +  + +ALMDAG+P+S+    +   + K+G    I++D +  ++ +       A  
Sbjct: 112 LSCCLNAACMALMDAGLPMSRLFCSVTCAISKEGQ---IITDPTARQEKVSRALLTFAID 168

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            +    + M    G  S   +   +  +++    I       +     ++
Sbjct: 169 SNE-RNVLMSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRRYSKM 217



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 24/204 (11%)

Query: 28  DGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T +LA V     +   K+  D   + V  Q +                 P
Sbjct: 24  DGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKM--------------GLP 69

Query: 85  TENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           +  E    + +  +     L +   ++   VI+ V+ HD + S     + AA  ALM +G
Sbjct: 70  SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVV-HD-DGSLLSCCLNAACMALMDAG 127

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQGSLDLFVSG--TQDAVLMVELEANQLSEDV 199
           LP               GQ + +P   +++ S  L      + +  +++       S   
Sbjct: 128 LPMSRLFCSVTCAISKEGQIITDPTARQEKVSRALLTFAIDSNERNVLMSSTTGSFSVQE 187

Query: 200 VLDAIIFGHNECKPVIEAISKLAK 223
           +   I       + + +      K
Sbjct: 188 LQQCIAISQKASEQIFQFYRDSVK 211


>gi|319939079|ref|ZP_08013443.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
 gi|319812129|gb|EFW08395.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
          Length = 399

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+LD + D  ++ LS+K +++   + 
Sbjct: 328 EVTVKVLDVNADAERVSLSIKALEERPAQE 357



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            AR+    +    E  ++   +  + +  G  V F G R G +  S L T  V  T   V
Sbjct: 94  EARKAWDKLVGREE--EVVTVKGTRAVKGGLSVEFEGLR-GFIPASMLDTRFVRNTERFV 150

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMKVV 690
             G     K+ + D +  +  LS + V
Sbjct: 151 --GQEFEAKIKEVDPKENRFILSRREV 175


>gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
          Length = 498

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 118/280 (42%), Gaps = 30/280 (10%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            S+A+ D G P    +A +   +    D  I+   +   +     +D     T+S I + 
Sbjct: 26  GSVAVDDLGSP-EAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGY-KTESVIPSK 83

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------ 557
           ++ +K       ++ +  +     +     E   +LS+ R Q       +E +       
Sbjct: 84  ELSIKHDVDPFEVVNVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVV 143

Query: 558 ------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASS 598
                 +    +   IG+ G +   +VE             +  AK+   D     +  S
Sbjct: 144 TGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS 203

Query: 599 SLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             A +E  + E+ ++     +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 204 RRAWLEQTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHI 262

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 263 DHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302



 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|222622658|gb|EEE56790.1| hypothetical protein OsJ_06372 [Oryza sativa Japonica Group]
          Length = 953

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            PE+ ++Y+G+V +VMD G FV      G R+GLVHISQ++T RVA   ++VK    V+V
Sbjct: 278 EPELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHISQMATRRVANAKEMVKRDQEVYV 337

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++    + K+ LSM+ VDQ+TG+ ++
Sbjct: 338 KVVSVKGQ-KLSLSMRDVDQDTGRDLL 363


>gi|165976690|ref|YP_001652283.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876791|gb|ABY69839.1| predicted transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 779

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|307250521|ref|ZP_07532466.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857463|gb|EFM89574.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 779

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|261821283|ref|YP_003259389.1| 30S ribosomal protein S1 [Pectobacterium wasabiae WPP163]
 gi|261605296|gb|ACX87782.1| ribosomal protein S1 [Pectobacterium wasabiae WPP163]
          Length = 565

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A      I  ++    +    
Sbjct: 74  DEVDVALDAIEDGFGETLLSREKAKRHEAWLTLEKAYEEAATVTGIINGKVKGGFTVELN 133

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 134 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 185

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 186 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 243

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 244 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 279



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 445 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATLVLN 504

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD+V  K    D + + + LS++  D+   K  +
Sbjct: 505 VGDSVEAKYTGVDRKNRVVSLSVRAKDEADEKDAI 539



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 205 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 259

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 260 RTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 319

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 320 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 375

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   V      +  K+GD +   +L  D +R
Sbjct: 376 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVVGEEAVREY-KKGDEIAAVVLQVDAER 434

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 435 ERISLGVKQLAEDP 448



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 230 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLT 289

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 290 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 349

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 350 ISLGLKQCKSNPWQ 363


>gi|146306885|ref|YP_001187350.1| 30S ribosomal protein S1 [Pseudomonas mendocina ymp]
 gi|330502874|ref|YP_004379743.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
 gi|145575086|gb|ABP84618.1| SSU ribosomal protein S1P [Pseudomonas mendocina ymp]
 gi|328917160|gb|AEB57991.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
          Length = 560

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +      S  ++  A    +  +  I  ++    +    
Sbjct: 66  DEVHVALDAVEDGFGETKLSREKAKRAESWLVLEAAFNAEEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 270



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      N 
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
               +V  + D+G F       +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCKTNPWED 356



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 439 DPFSNYVSLNDKGTIVRGVVKEVDAKGAIIDLGNEIEATLKASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K++  D + + I LS+K  D    K 
Sbjct: 499 DEVEAKIISVDRKSRVISLSIKSKDVEDEKD 529



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 89/248 (35%), Gaps = 22/248 (8%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +  ++ +  +  +       
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKYD---RERN 253

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP------PDQIRNVIGMGGKVIRG 576
           +   G   +  +    +     +      RV  +          + +  ++ +       
Sbjct: 254 RVSLGLKQLGEDPWVAIKARYPENTRVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTN 313

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-------KIYKGQVVK 629
                   VN+ D+  V +          +  + +  T+  E             G +  
Sbjct: 314 KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKGDKISGTIKS 373

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLS 686
           + DFG F+   G  DGLVH+S +S     +   V   K+GD +   +L  D +R +I L 
Sbjct: 374 ITDFGIFIGLDGGIDGLVHLSDISWNEAGE-EAVRRFKKGDELETVILSVDPERERISLG 432

Query: 687 MKVVDQNT 694
           +K ++ + 
Sbjct: 433 IKQLEDDP 440


>gi|163915365|gb|AAI57135.1| Unknown (protein for IMAGE:7523839) [Xenopus (Silurana) tropicalis]
          Length = 177

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 4/90 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVW 671
           + ++PE+  I+KG+V  V D+GAF+   G R  GLVH S +S+  V + S+VV  G+ VW
Sbjct: 1   MENLPELYDIFKGEVASVTDYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVW 60

Query: 672 VKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           VK++     D + K+ LSMKVV+Q  GK +
Sbjct: 61  VKVIGRETKDGKEKVSLSMKVVNQGDGKDL 90


>gi|70731658|ref|YP_261400.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf-5]
 gi|68345957|gb|AAY93563.1| ribosomal protein S1 [Pseudomonas fluorescens Pf-5]
          Length = 564

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 68  DEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 127

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 128 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 180 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 237

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 272



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 161 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 220

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 221 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 280

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 281 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 340

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 341 RRRISLGIKQCKSNPWED 358



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I KG V +V   GA +      +  +  S++S +R+    +V+KEG
Sbjct: 441 DPFSEYVQENDKGAIVKGVVKEVDAKGAIITLANDIEATLKASEISRDRIEDARNVLKEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + V  K++  D + + I+LS+K  D    K  +
Sbjct: 501 EEVEAKIISVDRKSRVIQLSIKSKDVEDEKEAI 533



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 318 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 364 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 422

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 423 SVDPERERISLGIKQLESDP 442


>gi|325283658|ref|YP_004256199.1| RNA binding S1 domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324315467|gb|ADY26582.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
          Length = 610

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++    ++ +   + +L ++   L      +  F P      +   ++ ++    GK ++
Sbjct: 152 VLEKMQEEGQTFEVEVLEKVRGGLVAQVEGIRAFLPAS---QVDTRRVNDLDPYVGKPLQ 208

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             + +   K N      V I+  S+ + +  +    ++T +    + ++G VV++ DFG 
Sbjct: 209 VQLIELNRKRN-----RVIISHRSILDAQKEQAKQETMTHLESGAE-FEGTVVEITDFGV 262

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           FV+  G  DGLVH S+L+  R     +VV  GD V V+++D D+ R +I LSMK +  + 
Sbjct: 263 FVNL-GGIDGLVHRSELTYGRFNHPREVVAVGDKVKVQVIDVDESRERINLSMKSLTNDP 321

Query: 695 GK 696
            +
Sbjct: 322 WE 323



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   + +  KG+V  + +FGAFV      +GLVH+S++S  +RV   ++V+ E
Sbjct: 320 DPWEGAMERYSIGQRVKGKVTNLTNFGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLTE 379

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G+     +L  D    +I L ++    +  
Sbjct: 380 GEEAEAVILRMDPVERRISLGIRQTTDDPW 409



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            KGQV  + DFG F+      +GL+HIS+L  +RV   +D+ K+GD +   +L+ D    
Sbjct: 422 VKGQVTGLTDFGVFMEIEEGIEGLIHISELDIQRVNNPADLFKKGDEIEAVILNIDPVEQ 481

Query: 682 KIKLSMK 688
           +  LS +
Sbjct: 482 RASLSRR 488



 Score = 40.7 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD 678
            I  G VV +   G  V      +G+V ++QL  E +   +     K GD++   ++  D
Sbjct: 72  DIVDGTVVFIGSEGIAVDIGAKVEGIVPLTQLGDEPMTAEEAQAQYKPGDSITTYVVRVD 131

Query: 679 -DRGKIKLSMKVVDQNTG 695
            + G+I LS K  DQN G
Sbjct: 132 TNTGQIVLSKKRADQNKG 149


>gi|251787890|ref|YP_003002611.1| RNA binding S1 domain-containing protein [Dickeya zeae Ech1591]
 gi|247536511|gb|ACT05132.1| RNA binding S1 domain protein [Dickeya zeae Ech1591]
          Length = 780

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24]
 gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24]
          Length = 491

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++  G V  +++FG
Sbjct: 167 YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 285 DPWQTFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 345 DELFVKVIDIDLERRRISLSLKQANE 370



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      DVV  GD V   +L   D 
Sbjct: 40  DLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|317506138|ref|ZP_07963961.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255560|gb|EFV14807.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 482

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++   K+   D     +  S  A +E  +  +R+   +  +   I KG +  +++FG
Sbjct: 164 YIGKEIETKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNRLQKGNIKKGVISSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VVK GD V V++LD D  R ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 22/208 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  R++   I    I +++  G 
Sbjct: 165 IGKEIETKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNRLQKGNIKKGVISSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTV-----KIASSSLAEIEAA--REMI 610
            V       +  + E +   ++       + D+ TV       +   ++    A   +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I +G+V K++ FGAFV      +GLVHIS+LS   + +   VV   D V
Sbjct: 285 RHFARTHAIGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELSERHIEQPESVVAVDDAV 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VK++D D +R +I LS+K  +++  + 
Sbjct: 345 LVKVIDIDLERRRISLSIKQANEDYPEE 372



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     S+VV  GDTV   +L   D 
Sbjct: 37  DIVSGTIVKVERDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDTVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM
           20162]
 gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM
           20162]
          Length = 499

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 169 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 228

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 229 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 287

Query: 694 TGK 696
             +
Sbjct: 288 PWR 290



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 287 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVG 346

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 347 DDAMVKVIDIDLERRRISLSLKQANED 373



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T  +V ++D G    A   LA I+A  +       V     I +G +VKV      +   
Sbjct: 7   TSPQVAVNDIG---SAEDFLAAIDATIKYFNDGDIVE--GTIVEGTIVKVDRDEVLLDIG 61

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +     S+VV  GD V   +L   D  G++ LS K   
Sbjct: 62  YKTEGVIPSRELSIKHDVDPSEVVNVGDAVEALVLTKEDKEGRLILSKKRAQ 113


>gi|77460293|ref|YP_349800.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
 gi|77384296|gb|ABA75809.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
          Length = 561

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 68  DEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 127

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 128 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 180 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 237

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 272



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 161 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 220

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I        
Sbjct: 221 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEGT 280

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 281 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 340

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 341 RRRISLGIKQCKSNPWED 358



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I KG V +V   GA +      +  +  S++S +RV    + +KEG
Sbjct: 441 DPFSEYVSVNDKGAIVKGTVKEVDAKGAIIVLADDIEATLKASEISRDRVEDARNALKEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             V  K++  D + + I LS+K  D    K  +
Sbjct: 501 QEVEAKIISVDRKSRQISLSIKSKDDAEEKEAI 533



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 318 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 364 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 422

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 423 SVDPERERISLGIKQLESDP 442


>gi|312882500|ref|ZP_07742241.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369900|gb|EFP97411.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 556

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 11/223 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D+  +      +         G T +  +      +  ++  A ++A+     I  ++  
Sbjct: 59  DLEVEVGSEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETVVGIINGKVKG 118

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +     +  F P      +    IR+   +  K +   V +   K N      V ++ 
Sbjct: 119 GFTVELNGIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSR 170

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            ++ E E + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV
Sbjct: 171 RAVIESENSVERDELLETLQEGAEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRV 228

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
              S++V  GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 229 KHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 125/355 (35%), Gaps = 52/355 (14%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPIRDT-------AHLENKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    L  +  G  +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDEL----LETLQEGAEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I   ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEIQVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAI------PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
              +++   +  + + RV  +          + +  ++ +               VN+ D
Sbjct: 267 WVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 590 DGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +  V +               +      +S  +         G++  + DFG F+   G 
Sbjct: 327 EVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGG 386

Query: 643 RDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            DGLVH+S +S   V     V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 387 IDGLVHLSDISWN-VTGEEAVREYKKGDEISAVVLAVDAERERISLGVKQMENDP 440



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVSEKKKGVLVNGTVTAVDAKGATIELEEGVEGYIRASEVSRDRVEDASLILTVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D++  K    D + + I LS+K  D+   + 
Sbjct: 499 DSIEAKFTGVDRKNRVINLSVKAKDEAEEQE 529


>gi|224116862|ref|XP_002331832.1| predicted protein [Populus trichocarpa]
 gi|222875070|gb|EEF12201.1| predicted protein [Populus trichocarpa]
          Length = 1171

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+V
Sbjct: 212 NEPELYGVYKGRVSRVMDTGCFVELSDFKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYV 271

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++      K+ LSM+ VDQN+GK ++
Sbjct: 272 KVISVSG-NKLSLSMRDVDQNSGKDLL 297


>gi|213418378|ref|ZP_03351444.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 515

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 42  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 101

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 102 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 153

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 154 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 211

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 212 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 247



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 413 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 472

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 473 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 507



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 173 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRE 227

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 228 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 287

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 288 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 343

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 344 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 402

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 403 ERISLGVKQLAEDP 416



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 198 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 257

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 258 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 317

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 318 ISLGLKQCKSNPWQ 331


>gi|156032920|ref|XP_001585297.1| hypothetical protein SS1G_13866 [Sclerotinia sclerotiorum 1980]
 gi|154699268|gb|EDN99006.1| hypothetical protein SS1G_13866 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1202

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 12/122 (9%)

Query: 588 DDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           ++DG  ++  S  +            R +   I D   + KIY G V  V DFGAFV+  
Sbjct: 196 EEDGFGRMRKSHKSSRRKKEDDDYYKRPLTPEIDDEVNLYKIYDGHVTGVKDFGAFVNIH 255

Query: 641 GAR---DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           G +   DGLVH+S L   +RV   SD+V     V VK++   +  +I LSMK VDQ TG+
Sbjct: 256 GVKGKVDGLVHVSALVEGQRVNHPSDLVSRNQPVKVKVIKI-EGNRIGLSMKDVDQETGE 314

Query: 697 PI 698
            +
Sbjct: 315 DL 316


>gi|58581803|ref|YP_200819.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623707|ref|YP_451079.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576640|ref|YP_001913569.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426397|gb|AAW75434.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367647|dbj|BAE68805.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521092|gb|ACD59037.1| ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 561

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +     +  + +  AL+  +     I  ++    +    
Sbjct: 67  DQVKVALDSIENGFGETVLSREKAKRAMVWDELEDALENNETITGRISGKVKGGFTVDIK 126

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P      + G          E     + +D      + S       
Sbjct: 127 DVRAFLPGSLVDVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVES 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    + D  +   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 178 EHSEEREQLMDKLQEGAILKGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVV 236

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 237 NVGDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 97/260 (37%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +   
Sbjct: 194 AILKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFD--- 250

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R  +   + ++  +    +    P    +      + +      I  G + 
Sbjct: 251 -------RERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEG 303

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E      N++        D+  V +               + A     +     +
Sbjct: 304 LVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHK 363

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
            N    GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +L
Sbjct: 364 KNDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNYKKGDTLEAVVL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 AVDPERERISLGVKQLEQDP 441



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 444 QYMASNPKGSKV-EGVVREVDAKGATIDLADGIEGYVASRDIANERVDDATQHLKVGDKI 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVD 691
             K +  D +G+ ++LS+K  D
Sbjct: 503 EAKFVGMDRKGRTLQLSIKAKD 524


>gi|50121515|ref|YP_050682.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
 gi|49612041|emb|CAG75490.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
          Length = 557

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAIEDGFGETLLSREKAKRHEAWLTLEKAYEEAATVTGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLSEDP 440



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+  G
Sbjct: 439 DPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATLVLNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D+V  K    D + + + LS++  D+   K  +
Sbjct: 499 DSVEAKYTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|67537102|ref|XP_662325.1| hypothetical protein AN4721.2 [Aspergillus nidulans FGSC A4]
 gi|40741573|gb|EAA60763.1| hypothetical protein AN4721.2 [Aspergillus nidulans FGSC A4]
 gi|259482440|tpe|CBF76926.1| TPA: hypothetical protein similar to ATP dependent helicase (Broad)
           [Aspergillus nidulans FGSC A4]
          Length = 1241

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           +     + D P + KIY G+V  V DFGAFV+  G R   DGLVH+S +    RV   SD
Sbjct: 261 KPPPVELDDSPVLYKIYDGRVTGVKDFGAFVNLVGVRGKVDGLVHVSAMQEGTRVNHPSD 320

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++      +I LSMK VDQ TG+ +V
Sbjct: 321 LVSRGQPVKVKVISIQGS-RIGLSMKEVDQETGQDLV 356


>gi|325144558|gb|EGC66857.1| ribosomal protein S1 [Neisseria meningitidis M01-240013]
 gi|325205925|gb|ADZ01378.1| ribosomal protein S1 [Neisseria meningitidis M04-240196]
          Length = 561

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 245 KVLKFDQDKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDESRRRISLGMKQCQANPWEE 357



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+                A        +  
Sbjct: 317 VHPSK---VVQLGDEVEVMILE-------IDESRRRISLGMKQC---QANPWEEFAANHN 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 364 KGDKI-SGAVKSITDFGVFVGLPGGIDGLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 421 LAIDVEKERISLGIKQLEGDP 441



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|240168008|ref|ZP_04746667.1| 30S ribosomal protein S1 [Mycobacterium kansasii ATCC 12478]
          Length = 481

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGTIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDAMVKVIDIDLERRRISLSLKQANED 368



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T  +V ++D GT         +  AA +      +      I +G +VKV      +   
Sbjct: 7   TSPQVAVNDIGT-------SEDFLAAIDKTIKYFND---GDIVEGTIVKVDRDEVLLDIG 56

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +     ++VV  GD V   +L   D  G++ LS K   
Sbjct: 57  YKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQ 108


>gi|190150591|ref|YP_001969116.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263935|ref|ZP_07545539.1| hypothetical protein appser13_13440 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915722|gb|ACE61974.1| predicted transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870800|gb|EFN02540.1| hypothetical protein appser13_13440 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 779

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|323143254|ref|ZP_08077948.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
 gi|322417016|gb|EFY07656.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
          Length = 557

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 11/214 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +  +   +  G T +  +      +   +  A +  +     I  ++    +     +
Sbjct: 67  VDVALESVESGDGETVLSREKAKRNEAWAKLEEAFKNNEAVVGVIDGKVKGGFTVQLGGI 126

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R    + GK ++  V +   K N      V ++  ++ E E +
Sbjct: 127 RAFLPGSL---VDVRPVRETTHLEGKELQFKVIKLDQKRN-----NVVVSRRAIIESENS 178

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 179 TERESVLANLQEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 236

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD + VK+L FD +R ++ L +K +  +    I 
Sbjct: 237 GDEITVKVLKFDRERQRVSLGLKQLGADPWADIA 270



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 130/360 (36%), Gaps = 62/360 (17%)

Query: 366 LSGTQRNDFMMHY----NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           + G  +  F +       FLP +  +V  +     RE  H  L  + +   + +  Q   
Sbjct: 111 IDGKVKGGFTVQLGGIRAFLPGSLVDVRPV-----RETTH--LEGKELQFKVIKLDQKRN 163

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   I ES+ S+   +V    LA +  G  +         G+VK+  D+    D+
Sbjct: 164 NV-VVSRRAIIESENSTERESV----LANLQEGQEVK--------GIVKNLTDYGAFVDL 210

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +        I+  ++        R R  +   + +
Sbjct: 211 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKF-----DRERQRVSLGLKQ 260

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + ++    +    P    +      + +      I  G + +  + E      NI     
Sbjct: 261 LGADPWADIAARFPIGSNIEGKVTNLTDYGCFVEIQEGVEGLVHVSEMDWTNKNIHPSKV 320

Query: 593 VKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +      ++    E  R                  +         G++  + DFG F+
Sbjct: 321 VSVGDVVTVKVLEIDEERRRISLGLKQCKPNPWLQFAESHSKGDRVTGKIKSITDFGIFI 380

Query: 638 HFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              G  DGLVH+S +S ++       +  K+GD +   +L  D +R +I L +K ++++ 
Sbjct: 381 GLEGGIDGLVHLSDISWQQSGEEAVRE-FKKGDEITAVVLQVDPERERISLGLKQIEEDP 439



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 19/197 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  I+   +    ES L   +    V+ +          + +GG     
Sbjct: 158 LDQKRNNVVVSRRAIIESENSTERESVLANLQEGQEVKGIVKNLTDYGAFVDLGGVDGLL 217

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLA--------EIEAAREMIRSITDVPEVN 620
               +    V+     VN+ D+ TVK+              +   A          P  +
Sbjct: 218 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERQRVSLGLKQLGADPWADIAARFPIGS 277

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
            I +G+V  + D+G FV      +GLVH+S++    +    S VV  GD V VK+L+ D+
Sbjct: 278 NI-EGKVTNLTDYGCFVEIQEGVEGLVHVSEMDWTNKNIHPSKVVSVGDVVTVKVLEIDE 336

Query: 680 -RGKIKLSMKVVDQNTG 695
            R +I L +K    N  
Sbjct: 337 ERRRISLGLKQCKPNPW 353



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  V   GA V       G +  S  S +RV   + V+KEGD+V  KL++ D + 
Sbjct: 452 IVSGTVESVDARGANVKLAEGVVGYIRASDCSRDRVEDATTVLKEGDSVEAKLVNVDRKT 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + + LS++  D+   K 
Sbjct: 512 RQLTLSIRAKDEAEEKE 528


>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 493

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AKV   D     +  S    +E  + E+  +     +  +I +G V  +++FG
Sbjct: 164 YIGQKIKAKVLELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I +G+V K++ FG F+      +GLVHIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366


>gi|161503891|ref|YP_001571003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865238|gb|ABX21861.1| hypothetical protein SARI_01981 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 557

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|16759851|ref|NP_455468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16764341|ref|NP_459956.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142376|ref|NP_805718.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56413969|ref|YP_151044.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62179505|ref|YP_215922.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161614783|ref|YP_001588748.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168263527|ref|ZP_02685500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466572|ref|ZP_02700434.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194444412|ref|YP_002040179.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451518|ref|YP_002044973.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194468516|ref|ZP_03074500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734164|ref|YP_002114032.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251361|ref|YP_002145899.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261950|ref|ZP_03162024.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362892|ref|YP_002142529.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243294|ref|YP_002214905.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390727|ref|ZP_03217338.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929888|ref|ZP_03220909.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205352188|ref|YP_002225989.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856372|ref|YP_002243023.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161607|ref|ZP_03347317.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424598|ref|ZP_03357381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213609752|ref|ZP_03369578.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213852007|ref|ZP_03381539.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224582790|ref|YP_002636588.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913246|ref|ZP_04657083.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825856|ref|ZP_06545024.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25294435|pir||AC0614 30S ribosomal protein S1 [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16419493|gb|AAL19915.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16502144|emb|CAD05381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138006|gb|AAO69567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56128226|gb|AAV77732.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62127138|gb|AAX64841.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161364147|gb|ABX67915.1| hypothetical protein SPAB_02535 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403075|gb|ACF63297.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409822|gb|ACF70041.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194454880|gb|EDX43719.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709666|gb|ACF88887.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631046|gb|EDX49632.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197094369|emb|CAR59882.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197215064|gb|ACH52461.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197240205|gb|EDY22825.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937810|gb|ACH75143.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603172|gb|EDZ01718.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204320882|gb|EDZ06083.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205271969|emb|CAR36813.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205347781|gb|EDZ34412.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206708175|emb|CAR32468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467317|gb|ACN45147.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246197|emb|CBG24001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992719|gb|ACY87604.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157524|emb|CBW17014.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911967|dbj|BAJ35941.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223304|gb|EFX48373.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616411|gb|EFY13320.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619661|gb|EFY16536.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622643|gb|EFY19488.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629792|gb|EFY26567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632486|gb|EFY29232.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637019|gb|EFY33722.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641441|gb|EFY38079.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646093|gb|EFY42609.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649605|gb|EFY46036.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654093|gb|EFY50416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658625|gb|EFY54887.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663482|gb|EFY59684.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670218|gb|EFY66358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671454|gb|EFY67576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676810|gb|EFY72877.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682735|gb|EFY78754.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686414|gb|EFY82396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713974|gb|EFZ05545.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129246|gb|ADX16676.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195937|gb|EFZ81104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199775|gb|EFZ84864.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202768|gb|EFZ87804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209039|gb|EFZ93976.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211515|gb|EFZ96354.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218000|gb|EGA02715.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219927|gb|EGA04403.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226705|gb|EGA10901.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229802|gb|EGA13925.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233027|gb|EGA17123.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240762|gb|EGA24804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243078|gb|EGA27099.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249759|gb|EGA33661.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252768|gb|EGA36606.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254794|gb|EGA38595.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260005|gb|EGA43633.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267994|gb|EGA51473.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269841|gb|EGA53290.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622658|gb|EGE29003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627232|gb|EGE33575.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332987872|gb|AEF06855.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 557

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
 gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
          Length = 485

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      E  ++  G V  +++FG
Sbjct: 163 YIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 223 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKATQED 281

Query: 694 TGK 696
             +
Sbjct: 282 PWQ 284



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FGAFV      +GLVHIS+L++  +     VV   
Sbjct: 281 DPWQLFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVN 340

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 341 DELFVKVIDIDLERRRISLSLKQANE 366



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      +VV  GDTV   +L   D 
Sbjct: 36  DLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVEALVLTKEDK 95

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 96  EGRLILSKKRAQ 107


>gi|240123741|ref|ZP_04736697.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
          Length = 559

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGF-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 243 KVLKFDQEKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 335 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 391

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 392 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKESRE 528


>gi|307257325|ref|ZP_07539095.1| hypothetical protein appser10_13230 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864175|gb|EFM96088.1| hypothetical protein appser10_13230 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 779

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|268319594|ref|YP_003293250.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
 gi|262397969|emb|CAX66983.1| ribosomal protein S1 [Lactobacillus johnsonii FI9785]
          Length = 400

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     V++   +     + IDDD      S                T+      I +G+
Sbjct: 234 IDKPSDVLKAGQDVKVKVIGIDDDKHRISLSIKQTLPS----PFEEATEGLHEGDIIEGE 289

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
           V  +  FGAF+       GLVH+S+++ + V K SDV+K G TV VK+L  D    +I L
Sbjct: 290 VKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISL 349

Query: 686 SMKVVDQNTGK 696
           S+K  D N  K
Sbjct: 350 SIKQADPNAAK 360



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++   K+   D    ++  S    IE  RE    ++     V    +G+V ++  FG
Sbjct: 153 YIGKKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           AFV   G  DGLVHIS++S + + K SDV+K G  V VK++   DD+ +I LS+K    +
Sbjct: 213 AFVDV-GGVDGLVHISEISYKHIDKPSDVLKAGQDVKVKVIGIDDDKHRISLSIKQTLPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|240080493|ref|ZP_04725036.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
 gi|268596628|ref|ZP_06130795.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
 gi|268682369|ref|ZP_06149231.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
 gi|268550416|gb|EEZ45435.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA19]
 gi|268622653|gb|EEZ55053.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID332]
          Length = 561

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 105/264 (39%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGF-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|325130335|gb|EGC53101.1| ribosomal protein S1 [Neisseria meningitidis OX99.30304]
 gi|325134457|gb|EGC57102.1| ribosomal protein S1 [Neisseria meningitidis M13399]
          Length = 559

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD D+ ++ L MK + ++  
Sbjct: 243 KVLKFDQDKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDESRRRISLGMKQCQANPWEE 355



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+                A        +  
Sbjct: 315 VHPSK---VVQLGDEVEVMILE-------IDESRRRISLGMKQC---QANPWEEFAANHN 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 362 KGDKI-SGAVKSITDFGVFVGLPGGIDGLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVV 418

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 419 LAIDVEKERISLGIKQLEGDP 439



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKESRE 528


>gi|308389421|gb|ADO31741.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha710]
          Length = 561

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEG+ V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGNEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|110589224|gb|ABG77121.1| 30S ribosomal subunit protein S1 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 283

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 10/151 (6%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +   + R     + P  +R+   + GK +   V +   + N      V ++  ++ E E 
Sbjct: 50  ISARSCRARWWIVRP--VRDTAYLEGKDLEFKVIKLDRRRN-----NVVVSRRAVVEQEY 102

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   SDVV+
Sbjct: 103 SAEREKLLENLQEGQEL-KGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSDVVQ 160

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD + VK+L FD +R ++ L +K +  +  
Sbjct: 161 IGDEITVKVLKFDRERNRVSLGLKQMGDDPW 191



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++ +      E  L+  +    ++ +          + +GG     
Sbjct: 83  LDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQELKGVVKNLTDYGAFVDLGGIDGLL 142

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNK 621
               +    V+     V I D+ TVK+               +   +   ++      + 
Sbjct: 143 HITDMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLKQMGDDPWVALARRYPEST 202

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
              G+V  + D+G FV      +GLVH+S++  ++    S
Sbjct: 203 RLFGKVTNIADYGCFVEIEEGVEGLVHVSEMDLDQQEHPS 242


>gi|332749494|gb|EGJ79911.1| protein yhgF [Shigella flexneri K-671]
          Length = 833

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 616 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 676 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 726


>gi|304309783|ref|YP_003809381.1| predicted transcriptional accessory protein [gamma proteobacterium
           HdN1]
 gi|301795516|emb|CBL43714.1| predicted transcriptional accessory protein [gamma proteobacterium
           HdN1]
          Length = 787

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRN-VIG-----MGGKVI 574
           ++        L  M+      R  +     P VE +A   ++    VIG        K  
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDRSAVHPEAYPLVERIAQKYEREPRTVIGDSNFLRQVKAA 601

Query: 575 RGIVEQTG-AKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G   + +I  +              A  +      +  +     +G V  V +
Sbjct: 602 DFVTEKFGIPTITDILKELEKPGRDPRPEFRMAQFKDGVESLEDLKPGMTLEGCVTNVTN 661

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R +I LSM++ D
Sbjct: 662 FGAFVDIGVHQDGLVHISVLSDKFVKDPHEVVKAGDIVKVKVVEIDIPRKRIGLSMRM-D 720

Query: 692 QNTGK 696
           +  G+
Sbjct: 721 EPVGQ 725


>gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
          Length = 488

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+SQLS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
               VK++D D +R +I LS+K  D++
Sbjct: 340 QDAMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|152979212|ref|YP_001344841.1| 30S ribosomal protein S1 [Actinobacillus succinogenes 130Z]
 gi|150840935|gb|ABR74906.1| ribosomal protein S1 [Actinobacillus succinogenes 130Z]
          Length = 550

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 23/258 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS----------GITA 502
           I+  V  I  G V         + I  +E  +  G +D KV    +          G T 
Sbjct: 25  INGTVVAIEKGFVYVDAGLKSEARIPAEEFANAQGEVDVKVGDIVNVALDAVEDGYGETK 84

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +  +  +   S   +  A +        I  ++    +     +  F P   +   P   
Sbjct: 85  LSREKAVRHESWIELEKAFEAQANVVGLINGKVKGGFTVELSGVRAFLPGSLVDTRPTRD 144

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
             +++G         +E    K++   +  V    + +    +A +    + ++ E  ++
Sbjct: 145 ADHLLGKE-------LEFKVIKLDQKRNNVVVSRRAVIESENSA-DRDEVLANLAEGVEV 196

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R 
Sbjct: 197 -KGIVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDKERT 254

Query: 682 KIKLSMKVVDQNTGKPIV 699
           ++ L +K + Q+    I 
Sbjct: 255 RVSLGLKQLGQDPWVAIA 272



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +       ++   +I +   V     
Sbjct: 223 DMAWKRVKHPSEIVNVGDEITVKVLKFDKERTRVSLGLKQLGQDPWVAIAENYPVGSKLT 282

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD+V V +L+ D +R +
Sbjct: 283 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDSVEVMVLEIDEERRR 342

Query: 683 IKLSMKVVDQNTG 695
           I L +K    N  
Sbjct: 343 ISLGLKQCKPNPW 355



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 128/363 (35%), Gaps = 56/363 (15%)

Query: 360 EQYVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
              V  ++G  +  F +  +    FLP +  +                L  + +   + +
Sbjct: 107 ANVVGLINGKVKGGFTVELSGVRAFLPGSLVDTRPTRDAD-------HLLGKELEFKVIK 159

Query: 416 TAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
             Q    + +VS   + ES+ S+    V    LA +  GV +         G+VK+  ++
Sbjct: 160 LDQKRNNV-VVSRRAVIESENSADRDEV----LANLAEGVEVK--------GIVKNLTEY 206

Query: 474 IILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--L 529
               D+ G +   H+  M +K     S I  +        I+  ++    ++ +      
Sbjct: 207 GAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDKERTRVSLGLK 261

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            +  +    ++E+     + T +V  +      +  + G+ G V   + E      NI  
Sbjct: 262 QLGQDPWVAIAENYPVGSKLTGKVTNLTDYGCFVEILDGVEGLV--HVSEMDWTNKNIHP 319

Query: 590 DGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVMDFG 634
              V +  S    +    E  R                  +         G++  + DFG
Sbjct: 320 SKVVSLGDSVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVSGKIKSITDFG 379

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
            F+   G  DGLVH+S +S   V     V   K+GD V   +L  D  + +I L +K ++
Sbjct: 380 IFIGLEGGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVEAVVLQVDSTKERISLGIKQLE 438

Query: 692 QNT 694
            + 
Sbjct: 439 DDP 441



 Score = 41.8 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 440 DPFNNFVSINKKGAVLSATVVEADAKGAKVELAGGVEGYIRAADLTNE--------VAAG 491

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 492 DVVEAKFTGVDRKARIVHLSVKAKDQ 517


>gi|320085220|emb|CBY95006.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 557

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
 gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
          Length = 488

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+SQLS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
               VK++D D +R +I LS+K  D++
Sbjct: 340 QDAMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|333012576|gb|EGK31957.1| protein yhgF [Shigella flexneri K-304]
          Length = 834

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|332763610|gb|EGJ93849.1| transcriptional accessory protein [Shigella flexneri 2930-71]
 gi|333013052|gb|EGK32428.1| protein yhgF [Shigella flexneri K-227]
          Length = 834

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|330808293|ref|YP_004352755.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376401|gb|AEA67751.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 562

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 68  DEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 127

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 128 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 180 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 237

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 272



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 161 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 220

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 221 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 280

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 281 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 340

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 341 RRRISLGIKQCKSNPWED 358



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I KG V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 441 DPFSEYVQENDKGAIVKGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + V  K++  D + + I+LS+K  D    K  +
Sbjct: 501 EEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAI 533



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 318 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 364 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 422

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 423 SVDPERERISLGIKQLESDP 442


>gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
          Length = 498

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 30/280 (10%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            S+A+ D G P    +A +   +    D  I+   +   +     +D     T+  I + 
Sbjct: 26  GSVAVDDLGSP-EAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGY-KTEGVIPSK 83

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------ 557
           ++ +K       ++ +  +     +     E   +LS+ R Q       +E +       
Sbjct: 84  ELSIKHDVDPFEVVNVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVV 143

Query: 558 ------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASS 598
                 +    +   IG+ G +   +VE             +  AK+   D     +  S
Sbjct: 144 TGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS 203

Query: 599 SLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             A +E  + E+ ++     +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 204 RRAWLEQTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHI 262

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 263 DHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302



 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
 gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
          Length = 493

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNAN 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +   VK++D D +R +I LS+K  D++
Sbjct: 340 EDAMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++ + +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|145630844|ref|ZP_01786621.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
 gi|144983504|gb|EDJ90972.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
          Length = 412

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +S  V  I  G V         S I   E  +  G ++ +V  T +          
Sbjct: 20  QGSIVSGTVVAIQKGFVLVDAGLKSESAIPVAEFLNAQGELEIQVGDTVNVALDAVEDGF 79

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGIVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 14/98 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                  G++  + DFG F+   G  DGLVH+S +S  
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS 399


>gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1]
          Length = 491

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++  G V  +++FG
Sbjct: 167 YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 285 DPWQTFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 345 DELFVKVIDIDLERRRISLSLKQANE 370



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      DVV  GD V   +L   D 
Sbjct: 40  DLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVLTKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|242777760|ref|XP_002479099.1| RNA helicase-like splicing factor (HRH1), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218722718|gb|EED22136.1| RNA helicase-like splicing factor (HRH1), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1222

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           R     I D P ++KIY G+V  + DFGAFV+  G R   DGLVH+S +    RV   SD
Sbjct: 249 RPPTPEIDDQPVLHKIYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQEGARVNHPSD 308

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++      +I LSMK VDQ TG+ ++
Sbjct: 309 LVSRGQPVKVKVISI-QGTRIGLSMKEVDQVTGRDLI 344


>gi|148379766|ref|YP_001254307.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931983|ref|YP_001384064.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|148289250|emb|CAL83346.1| Composite protein include: 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase (N-terminus) and an RNA-associated domain
           (C-terminus) [Clostridium botulinum A str. ATCC 3502]
 gi|152928027|gb|ABS33527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A str. ATCC
           19397]
          Length = 638

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 14/220 (6%)

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDE     +  K    + G   + +       +   +  A +  +  ++ + + +   L 
Sbjct: 350 GDEIEAKIVRIK---NEDGYVVLSLKELHREKALKNLKEAFENKQTIKVIVKDAVDAGLI 406

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
                +  F P   I     D +    G+  +V   I+E       I D    KI  S  
Sbjct: 407 CIYNGVRVFIPASHIELSHVDDLEAYKGLELEV--NIIE------FIKDRYRTKIVGSRR 458

Query: 601 AEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++  R      T    E + + +G+V +  DFGAF+      DGL+H+S++S  RV K
Sbjct: 459 NILKTIRNKHIEETWNSLEKDTVVEGEVKRFTDFGAFIEI-NGVDGLLHVSEISWGRVEK 517

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             D +K GD + V +LD D +  K+ LS+K + Q+  K +
Sbjct: 518 PEDALKIGDKIKVYILDIDKENKKLALSIKKLIQDPWKSV 557



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G VE+    + I D   V I        + A       ++  +S+     +  I  G+V
Sbjct: 512 WGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIQDPWKSVEIKYPIGNIVLGKV 571

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I LS
Sbjct: 572 VRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRIALS 631

Query: 687 MKVVDQ 692
           +K V++
Sbjct: 632 IKDVEE 637



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       S            +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAINKMNNND-------SIIEVSKNEMLNYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++ +  +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLSYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKN 362

Query: 679 DRGKIKLSMKVV 690
           + G + LS+K +
Sbjct: 363 EDGYVVLSLKEL 374


>gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
 gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
          Length = 490

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +  ++ KG V  +++FG
Sbjct: 164 YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D DR +I LS+K  +++
Sbjct: 342 DDAMVKVIDIDLDRRRISLSLKQANED 368



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|227111988|ref|ZP_03825644.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328155|ref|ZP_03832179.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 557

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAIEDGFGETLLSREKAKRHEAWLTLEKAYEEAATVTGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S  S +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASDASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD+V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDSVEAKYTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREFKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|225435349|ref|XP_002285257.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
 gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
          Length = 254

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 13/230 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR     R    + G +    GS+    G+T+ IV V  G RE ++   +++ +  
Sbjct: 31  VRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSV-FGPRESKK---AMAYSGT 86

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                + ++   A      +        G+  +  +A+   +   +    T+ + + + E
Sbjct: 87  GRLNCNVSYTTFA----MPIRGQGSDHKGYSSMLHKALEGAIIVESFPKTTVDVFALVLE 142

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S GS     +  +SLAL DAG+ +   VA +++  +       ++ D   +E+       
Sbjct: 143 SGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLGKN----LVIDPILEEESYQDGSL 198

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            +    S    +      G  S   +  A+Q        +   +   L E
Sbjct: 199 LITCMPSR-NEVTQLTVNGEWSTPRVHEAMQICLEACSKLAKIIRSCLKE 247



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 22/217 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP  L+TG +   + G+  A +G T V+ +V   R  K       +  +   R       
Sbjct: 42  RPAFLKTGAV-NAASGSAYAEFGNTKVIVSVFGPRESKKA-----MAYSGTGRLNCNVSY 95

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
               +    + +++    S M+ +++    +     K    V   V++      P V+S 
Sbjct: 96  TTFAMPIRGQGSDH-KGYSSMLHKALEGAIIVESFPKTTVDVFALVLESGGSDLPVVISC 154

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDAVLMV 188
             AS AL  +G+     V    V  +    V++P L+E+    GSL +    +++ V  +
Sbjct: 155 --ASLALADAGIMMYDLVASVSVSCLGKNLVIDPILEEESYQDGSLLITCMPSRNEVTQL 212

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
            +     +  V        H   +  +EA SKLAK+ 
Sbjct: 213 TVNGEWSTPRV--------HEAMQICLEACSKLAKII 241


>gi|37524230|ref|NP_927574.1| hypothetical protein plu0210 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783653|emb|CAE12505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 776

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +      + +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 642 ETMNDLHPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNRFVEDPHTVVKAGDIVK 701

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK+L+ D +R +I L+M+ +D+  G+
Sbjct: 702 VKVLEVDLNRKRIALTMR-LDEQPGE 726


>gi|253688122|ref|YP_003017312.1| ribosomal protein S1 [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754700|gb|ACT12776.1| ribosomal protein S1 [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 557

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAIEDGFGETLLSREKAKRHEAWLTLEKAYEEAATVTGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD+V  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDSVEAKYTGVDRKNRVVSLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +    T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQLFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|325136195|gb|EGC58803.1| ribosomal protein S1 [Neisseria meningitidis M0579]
          Length = 561

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS      + + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESSEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|147856641|emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]
          Length = 1162

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+VK
Sbjct: 228 EPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVK 287

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKPIV 699
           ++    + K+ LSM+ VDQNTG+ ++
Sbjct: 288 VISVSGQ-KLSLSMRDVDQNTGRDLI 312


>gi|313680954|ref|YP_004058693.1| RNA binding s1 domain protein [Oceanithermus profundus DSM 14977]
 gi|313153669|gb|ADR37520.1| RNA binding S1 domain protein [Oceanithermus profundus DSM 14977]
          Length = 126

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 49/83 (59%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   I +G+V +VMDFGAFV   G   GLVHIS+++ E V    D + EGD V V +
Sbjct: 1   MKYEAGSIVEGRVTRVMDFGAFVELPGGESGLVHISEIAHEFVKNVRDFLNEGDIVEVFV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L  DD+G++ LS+K + +    P
Sbjct: 61  LGRDDKGRLDLSIKELMEKPVDP 83


>gi|293398896|ref|ZP_06643061.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
 gi|291610310|gb|EFF39420.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
          Length = 570

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 24  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 83

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 84  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 143

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 144 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 195

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 196 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 253

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 254 KVLKFDQEKQRVSLGMKQLGEDPW 277



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 275 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 335 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 366



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 346 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 402

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 403 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 450



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 463 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 522

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 523 RSIKLSVKAKDAKESRE 539


>gi|291043584|ref|ZP_06569300.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
 gi|291012047|gb|EFE04036.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
          Length = 570

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 24  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 83

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 84  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 143

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 144 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 195

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 196 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 253

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 254 KVLKFDQEKQRVSLGMKQLGEDPW 277



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 275 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 335 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 366



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 346 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 402

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 403 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 450



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 463 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 522

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 523 RSIKLSVKAKDAKESRE 539


>gi|254805102|ref|YP_003083323.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
 gi|254668644|emb|CBA06288.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
          Length = 561

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|161870174|ref|YP_001599344.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
 gi|161595727|gb|ABX73387.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
 gi|261392418|emb|CAX49960.1| 30S ribosomal protein S1 [Neisseria meningitidis 8013]
 gi|319410568|emb|CBY90937.1| 30S ribosomal protein S1 [Neisseria meningitidis WUE 2594]
          Length = 561

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|77406676|ref|ZP_00783718.1| ribosomal protein S1 [Streptococcus agalactiae H36B]
 gi|77174717|gb|EAO77544.1| ribosomal protein S1 [Streptococcus agalactiae H36B]
          Length = 358

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 224 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQ 283

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ + D  ++ LSMK +++   +
Sbjct: 284 EVTVKVLEVNSDAERVSLSMKALEERPAQ 312



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +E  A    + +    EV  +  G+V ++  F
Sbjct: 104 KFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSF 163

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 164 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTP 222

Query: 693 NTG 695
              
Sbjct: 223 GPW 225


>gi|325204302|gb|ADY99755.1| ribosomal protein S1 [Neisseria meningitidis M01-240355]
          Length = 559

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 243 KVLKFDQEKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 335 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 391

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 392 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKESRE 528


>gi|325128402|gb|EGC51285.1| ribosomal protein S1 [Neisseria meningitidis N1568]
          Length = 559

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 243 KVLKFDQEKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 335 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 391

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 392 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKESRE 528


>gi|319786987|ref|YP_004146462.1| ribosomal protein S1 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465499|gb|ADV27231.1| ribosomal protein S1 [Pseudoxanthomonas suwonensis 11-1]
          Length = 562

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +     +  + +  AL++ +     I  ++    +    
Sbjct: 67  DQVKVALDSLENGFGETVLSREKAKRAMVWDELEEALEKNETITGRISGKVKGGFTVDIK 126

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   + +   K N      V ++  ++ E E
Sbjct: 127 DVRAFLPGSL---VDVRPVRDPAYLEGKELEFKLIKLDRKRN-----NVVVSRRAVVESE 178

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + +  + E  K+ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV
Sbjct: 179 HSEEREQLMEKLVEGAKL-KGVVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVV 236

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + V++L FD +R ++ L +K + ++    I 
Sbjct: 237 NVGDELEVRVLKFDRERNRVSLGLKQLGEDPWDNIA 272



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 356



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 101/267 (37%), Gaps = 39/267 (14%)

Query: 455 ISKPVAGIAM-GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           + K V G  + G+VK+  D+    D+ G +   H+  M +K     S +  +        
Sbjct: 187 MEKLVEGAKLKGVVKNLTDYGAFVDLGGIDGLLHITDMAWKRVRHPSEVVNVG------- 239

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV----- 566
              + + + + +  R R  +   + ++  +    +    P    +      + +      
Sbjct: 240 ---DELEVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVE 296

Query: 567 IGMGGKVIRGIVEQTGAKVNID--------DDGTVKIASSSLA-------EIEAAREMIR 611
           I  G + +  + E      N++        D+  V +               + A     
Sbjct: 297 IEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAANPWE 356

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGD 668
           +   + +      GQ+  + DFG F+   G  DGLVH+S +S        DV+   K+GD
Sbjct: 357 TFAAIHKKGDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVLRNFKKGD 414

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           T+   +L  D +R +I L +K ++Q+ 
Sbjct: 415 TLDAVVLAVDPERERISLGLKQMEQDP 441



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+  G V +V   GA V      +G V    +S +RV   +  +K GD V
Sbjct: 444 QYMAANPKGSKV-SGVVKEVDAKGAVVELADGIEGYVAARDISYDRVDDATQHLKVGDKV 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVD 691
             K +  D +G+ ++LS+K  D
Sbjct: 503 EAKFVGMDRKGRSLQLSIKAKD 524


>gi|240113139|ref|ZP_04727629.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
 gi|254493933|ref|ZP_05107104.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
 gi|268599220|ref|ZP_06133387.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
 gi|268603906|ref|ZP_06138073.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
 gi|226512973|gb|EEH62318.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
 gi|268583351|gb|EEZ48027.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
 gi|268588037|gb|EEZ52713.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
          Length = 561

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99]
 gi|183982447|ref|YP_001850738.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
 gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99]
 gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
          Length = 481

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGTIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDAMVKVIDIDLERRRISLSLKQANED 368



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|59801032|ref|YP_207744.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
 gi|239999160|ref|ZP_04719084.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
 gi|240013932|ref|ZP_04720845.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI18]
 gi|240016374|ref|ZP_04722914.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA6140]
 gi|240115895|ref|ZP_04729957.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
 gi|240125932|ref|ZP_04738818.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
 gi|260440290|ref|ZP_05794106.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
 gi|268594992|ref|ZP_06129159.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
 gi|268601567|ref|ZP_06135734.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
 gi|268684527|ref|ZP_06151389.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
 gi|268686837|ref|ZP_06153699.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
 gi|59717927|gb|AAW89332.1| putative 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
 gi|268548381|gb|EEZ43799.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
 gi|268585698|gb|EEZ50374.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
 gi|268624811|gb|EEZ57211.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
 gi|268627121|gb|EEZ59521.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
          Length = 561

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
          Length = 498

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 30/280 (10%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            S+A+ D G P    +A +   +    D  I+   +   +     +D     T+  I + 
Sbjct: 26  GSVAVDDLGSP-EAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGY-KTEGVIPSK 83

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------ 557
           ++ +K       ++ +  +     +     E   +LS+ R Q       +E +       
Sbjct: 84  ELSIKHDVDPFEVVNVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVV 143

Query: 558 ------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASS 598
                 +    +   IG+ G +   +VE             +  AK+   D     +  S
Sbjct: 144 TGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS 203

Query: 599 SLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             A +E  + E+ ++     +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 204 RRAWLEQTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHI 262

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 263 DHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302



 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
 gi|238657836|emb|CAZ28905.1| ribonuclease pH related [Schistosoma mansoni]
          Length = 258

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 10/194 (5%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +     R+DGR    +R +  Q G    + G     +G+T+ I  V +G       V   
Sbjct: 4   IFYNGRRVDGRRPNEIRRVDCQFG-SGYSDGIVFLHQGNTKVIASV-VGPH--APRVKGD 59

Query: 367 SGTQRNDFMMHYNFLPCAT--GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                      +   P A+  GE  ++ +  R               V+         + 
Sbjct: 60  GTPDGATITCQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVIRTEKYPMSQID 119

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  E+ +SDGS     V  ++LAL DAG+ +   V+   +GL        + +D+   E+
Sbjct: 120 IFLEVIQSDGSEFACAVNATTLALTDAGIEMDCLVSAATVGLWGS----HVFADLCRFEE 175

Query: 485 HLGHMDFKVAGTDS 498
           +       V    +
Sbjct: 176 NPRISQLTVVCLPN 189



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYLR--- 79
           SDG V    G T V+A+VV   + +   D  P    +T  + +  +A     G   +   
Sbjct: 31  SDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATITCQFTKPPFAS--TSGERRKLSS 88

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
           ++    +    I  +    IR    K   ++  + + V+Q D        ++ A + AL 
Sbjct: 89  KDRSANDFATAIEEIFSCVIRT--EKYPMSQIDIFLEVIQSDGSEFAC--AVNATTLALT 144

Query: 140 LSGLPFEGPVVGAQVDYINGQYVL--------NPRLDED 170
            +G+  +  V  A V    G +V         NPR+ + 
Sbjct: 145 DAGIEMDCLVSAATVGLW-GSHVFADLCRFEENPRISQL 182


>gi|114555237|ref|XP_001158210.1| PREDICTED: putative S1 RNA binding domain protein isoform 1 [Pan
           troglodytes]
          Length = 203

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
          Length = 498

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 30/280 (10%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            S+A+ D G P    +A +   +    D  I+   +   +     +D     T+  I + 
Sbjct: 26  GSVAVDDLGSP-EAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGY-KTEGVIPSK 83

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------ 557
           ++ +K       ++ +  +     +     E   +LS+ R Q       +E +       
Sbjct: 84  ELSIKHDVDPFEVVNVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVV 143

Query: 558 ------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASS 598
                 +    +   IG+ G +   +VE             +  AK+   D     +  S
Sbjct: 144 TGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS 203

Query: 599 SLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             A +E  + E+ ++     +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 204 RRAWLEQTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHI 262

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 263 DHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|320093717|ref|ZP_08025582.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979338|gb|EFW10828.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 479

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I  +  AK+   D     +  S  A +E  +  +R+      +  ++  G V  +++FG
Sbjct: 161 YIGRELDAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQKGQVRTGTVSSIVNFG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 221 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279

Query: 694 TGK 696
             +
Sbjct: 280 PWQ 282



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 242 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQAFARTHAIGQVVPG 296

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   +     VVK  + V+VK++D D DR +I 
Sbjct: 297 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHIELPDQVVKVNEEVFVKVIDIDLDRRRIS 356

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 357 LSLKQANE 364



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      DVV  GD V   +L   D 
Sbjct: 34  DIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQVEALVLQKEDK 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 94  EGRLLLSKKRAQ 105


>gi|291616906|ref|YP_003519648.1| RpsA [Pantoea ananatis LMG 20103]
 gi|291151936|gb|ADD76520.1| RpsA [Pantoea ananatis LMG 20103]
 gi|327393334|dbj|BAK10756.1| 30S ribosomal protein S1 RpsA [Pantoea ananatis AJ13355]
          Length = 569

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 78  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAETVTGIINGKVKGGFTVELN 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 248 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 283



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 449 AEDPFNNYITLNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASLDRIEDATLVLN 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 509 VGDDVEAKFTGVDRKNRVVSLSVRAKDQADEKEAI 543



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 209 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRE 263

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 264 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 323

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 324 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 379

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 380 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 437

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 438 RERISLGVKQLAEDP 452



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 234 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 294 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKSNPWQ 367


>gi|218768323|ref|YP_002342835.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
 gi|121052331|emb|CAM08662.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
          Length = 561

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T     +    G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQDTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|319440326|ref|ZP_07989482.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
          Length = 486

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   +     +V  G
Sbjct: 280 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHIDVPDQIVTVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             + VK++D D +R +I LS+K  D++
Sbjct: 340 QDLMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            +V I+D GT         +  AA +      +      I +G VVKV      +     
Sbjct: 7   PQVAINDIGT-------AEDFLAAIDQTIKYFND---GDIVEGTVVKVDHDEVLLDIGYK 56

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
            +G++   +LS +      +VV+ GD V   +L   D  G++ LS K   
Sbjct: 57  TEGVIPSRELSIKHDVDPGEVVEIGDEVDALVLTKEDKDGRLILSKKRAQ 106


>gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
 gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
          Length = 491

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  E  ++  G V  +++FG
Sbjct: 167 YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 22/203 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +          F  ++E   + P  + +++  G 
Sbjct: 168 IGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGA 227

Query: 572 KV-------IRGIVEQTGAKVN----IDDDGTVKIASSSLAEIEAAR----------EMI 610
            V       +  + E +   ++    + + G          +++  R          +  
Sbjct: 228 FVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPW 287

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD +
Sbjct: 288 QTFARTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDEL 347

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
           +VK++D D +R +I LS+K  ++
Sbjct: 348 FVKVIDIDLERRRISLSLKQANE 370



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      +VV  GD+V   +L   D 
Sbjct: 40  DLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVLTKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|209756502|gb|ACI76563.1| hypothetical protein ECs4249 [Escherichia coli]
 gi|209756506|gb|ACI76565.1| hypothetical protein ECs4249 [Escherichia coli]
          Length = 740

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|121635013|ref|YP_975258.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
 gi|120866719|emb|CAM10472.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
          Length = 570

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 24  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 83

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 84  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPG 143

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 144 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 195

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 196 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 253

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 254 KVLKFDQEKQRVSLGMKQLGEDPW 277



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 275 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 335 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 366



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 346 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 402

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 403 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 450



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 463 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 522

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 523 RSIKLSVKAKDAKESRE 539


>gi|300933407|ref|ZP_07148663.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
          Length = 488

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 86.9 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
               VK++D D +R +I LS+K  D++
Sbjct: 340 QDAMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|240121501|ref|ZP_04734463.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID24-1]
 gi|240128444|ref|ZP_04741105.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
 gi|317164447|gb|ADV07988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 559

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 243 KVLKFDQEKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 335 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 391

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 392 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKESRE 528


>gi|240118193|ref|ZP_04732255.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
          Length = 559

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMISSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 243 KVLKFDQEKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQATRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 335 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 391

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 392 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKESRE 528


>gi|227431694|ref|ZP_03913724.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352518|gb|EEJ42714.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 396

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 22/207 (10%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           +++I    ++        IL+  +    E   QL E   ++ +  +   ++  +   G  
Sbjct: 154 NKDIKAQVIEIDAAKARLILSRKAVAAQERAAQLAEAFEKLSVGEVVEGKVARLTDFGAF 213

Query: 573 V-------IRGIVEQTGAKV----NIDDDGTVKIASSSLAEIEAAR----------EMIR 611
           V       +  I E +  +V    ++   G          + E  R              
Sbjct: 214 VDLGGVDGLVHISEISHDRVKNPADVLTKGETVNVKILALDAEKGRISLSIKATQPGPWD 273

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            + +      + +G V +V DFGAFV      +GLVH+SQ+S +R+   S+V+K GD V 
Sbjct: 274 KVAEEAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQ 333

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           V++LD      +I LSMK +++   + 
Sbjct: 334 VQVLDVKPAEERISLSMKALEEKPERE 360


>gi|188025797|ref|ZP_02959855.2| hypothetical protein PROSTU_01754 [Providencia stuartii ATCC 25827]
 gi|188020538|gb|EDU58578.1| hypothetical protein PROSTU_01754 [Providencia stuartii ATCC 25827]
          Length = 569

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 78  DEIDVALDAVEDGFGETILSREKAKRHEAWLMLEKAYEEAETVTGVINGKVKGGFTVELN 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 SSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 248 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 283



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +     +   I  G+V+ V   GA V      +G +  S+ S +RV   + V+K
Sbjct: 449 AEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELTLGVEGYLRASEASRDRVEDATQVLK 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 509 VGDDVEAKYTGVDRKNRVINLSVRAKDEADEKDAI 543



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 124 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDQKRN 176

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 177 NV-VVSRRAVIESESSAERDQL----LENLQEGMEVK--------GIVKNLTDYGAFVDL 223

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 224 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRERTRVSLGLKQLGEDP 278

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 279 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 338

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +   +        +G++  + DFG F+ 
Sbjct: 339 VVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRVEGKIKSITDFGIFIG 394

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 395 LEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 452



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 234 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 294 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKANPWQ 367


>gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11]
 gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|215404070|ref|ZP_03416251.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|215411275|ref|ZP_03420083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 94_M4241A]
 gi|215426948|ref|ZP_03424867.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T92]
 gi|215430522|ref|ZP_03428441.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|215445812|ref|ZP_03432564.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|218753336|ref|ZP_03532132.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis GM 1503]
 gi|219557550|ref|ZP_03536626.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T17]
 gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
 gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260186578|ref|ZP_05764052.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CPHL_A]
 gi|260200691|ref|ZP_05768182.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis T46]
 gi|260204899|ref|ZP_05772390.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis K85]
 gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289554596|ref|ZP_06443806.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210]
 gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207]
 gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506]
 gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
           94_M4241A]
 gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475]
 gi|6226090|sp|O06147|RS1_MYCTU RecName: Full=30S ribosomal protein S1
 gi|2113914|emb|CAB08883.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium tuberculosis
           H37Rv]
 gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11]
 gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
 gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289439228|gb|EFD21721.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
           94_M4241A]
 gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
          Length = 481

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 88.0 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDAMVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|320539829|ref|ZP_08039488.1| putative transcriptional accessory protein [Serratia symbiotica
           str. Tucson]
 gi|320030015|gb|EFW12035.1| putative transcriptional accessory protein [Serratia symbiotica
           str. Tucson]
          Length = 776

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSM+ +D+  G+
Sbjct: 711 RKRIALSMR-LDEQPGE 726


>gi|165976156|ref|YP_001651749.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876257|gb|ABY69305.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 554

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 109/255 (42%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V         ++      G + 
Sbjct: 23  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVRVIVQVDVVLKAVEDGFGETV 82

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 83  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 142

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + +  G
Sbjct: 143 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVTG 196

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 197 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 255

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 256 LGLKQLGQDPWAAIA 270



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 352 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 409

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 410 KGDEVEAVVLQVDAVKERISLGIKQLESDP 439



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 263 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 322

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 323 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 354



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G+VV+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 438 DPFTNFVESTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITTVISAG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 498 DTIEAKYTGVDRKARVVNLSVRAKDE 523


>gi|254361237|ref|ZP_04977380.1| ribosomal protein S1 [Mannheimia haemolytica PHL213]
 gi|153092733|gb|EDN73776.1| ribosomal protein S1 [Mannheimia haemolytica PHL213]
          Length = 555

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 115/268 (42%), Gaps = 21/268 (7%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           S  A    GV +   V  I  GLV     F   S I   E      + +V   D     +
Sbjct: 13  SFAATPRLGVFVKGTVVAIQKGLVIVDTGFKSESAIDASEFTNAQGELEVQVGDE--VDV 70

Query: 504 QMDMKIGGISENIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPR 552
            +     G    ++            AL++A   +  ++  ++ KV     ++L      
Sbjct: 71  VLKAVEDGFGATVVSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAF 130

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
           +    +    +R+ + + GK     V +   K N      V ++  ++ E E+ ++    
Sbjct: 131 LPGSLVDTRPVRDSLNLEGKEYEFKVIKLDQKRN-----NVVVSRRAVIETESNQDRDAV 185

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD V V
Sbjct: 186 LANLVEGSEV-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVNVGDEVTV 243

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           K+L FD D+ ++ L +K + Q+    I 
Sbjct: 244 KVLKFDKDKTRVSLGLKQLGQDPWAVIA 271



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKE 666
                      N    G++  + DFG F+   G  DGLVH+S +S   V+    V   K+
Sbjct: 353 PWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VSGEEAVRNYKK 411

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           GD V   +L  D  + +I L +K ++ + 
Sbjct: 412 GDEVEAVVLQVDAVKERISLGIKQLESDP 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +   I  G+VV+V   G  V   G  +  +  ++ + ERV   + V+  G
Sbjct: 439 DPFTNFVDGTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D++  K    D + + + LS++  ++
Sbjct: 499 DSIEAKYTGVDRKSRVVNLSVRAKNE 524



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+      +   +       ++    I +   VN    
Sbjct: 222 DMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPVNSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLEVDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWE 355


>gi|15602666|ref|NP_245738.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721105|gb|AAK02885.1| RpS1 [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 549

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 29/265 (10%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMK 508
            G  +S  V  I  G V         S I  +E  +  G +D +V      +  + +D  
Sbjct: 20  QGSIVSGTVVAIQKGFVLVDAGLKSESAIPVEEFLNAQGELDVQVG----DVVNVALDAV 75

Query: 509 IGGISENIMVMALQQAKRGRLHILNEM-------------SKVLSESRLQLGEFTPRVEI 555
             G  E  +  + ++A R    I  E               KV     ++L      +  
Sbjct: 76  EDGFGETKL--SREKAVRHESWIELEKAYEEQATVIGLINGKVKGGFTVELNGVRAFLPG 133

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
             +    +R  + + GK +   V +   K N      V ++  ++ E E ++E  + + +
Sbjct: 134 SLVDTRPVRETLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQILEN 188

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L
Sbjct: 189 LQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPIV 699
            FD DR ++ L +K + Q+    I 
Sbjct: 247 KFDKDRTRVSLGLKQLGQDPWVAIA 271



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQILENLQEGSEVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 279 KLSGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKPNPW 354



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 133/366 (36%), Gaps = 58/366 (15%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           +EQ   +  ++G  +  F +  N    FLP +  +   +     RE  H  L  + +   
Sbjct: 103 EEQATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRPV-----RETLH--LEGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     +    L  +  G  +         G+VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESENSQEREQI----LENLQEGSEVK--------GIVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        I+  ++     + +   
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDKDRTRVSL 257

Query: 529 --LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               +  +    ++E+     + + +V  +      +  + G+ G V   + E      N
Sbjct: 258 GLKQLGQDPWVAIAENHPVNSKLSGKVTNLTDYGCFVEILDGVEGLV--HVSEMDWTNKN 315

Query: 587 IDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVM 631
           I     V +       +    E  R                  +        +G++  + 
Sbjct: 316 IHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKSIT 375

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DFG F+   G  DGLVH+S +S   V+    V   K+GD V   +L  D  + +I L +K
Sbjct: 376 DFGIFIGLDGGIDGLVHLSDISWN-VSGEEAVRQYKKGDEVAAVVLQVDAVKERISLGIK 434

Query: 689 VVDQNT 694
            ++++ 
Sbjct: 435 QLEEDP 440



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   +   +VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVAVNKKGAVLSAKVVEADAKGAKVELDGGVEGYIRAADLTNE--------VNAG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS++  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVRAKDQ 516


>gi|82778776|ref|YP_405125.1| hypothetical protein SDY_3669 [Shigella dysenteriae Sd197]
 gi|81242924|gb|ABB63634.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 740

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|15803911|ref|NP_289947.1| hypothetical protein Z4762 [Escherichia coli O157:H7 EDL933]
 gi|15833503|ref|NP_312276.1| hypothetical protein ECs4249 [Escherichia coli O157:H7 str. Sakai]
 gi|12518037|gb|AAG58508.1|AE005563_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363723|dbj|BAB37672.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209756500|gb|ACI76562.1| hypothetical protein ECs4249 [Escherichia coli]
          Length = 740

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|296314512|ref|ZP_06864453.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
 gi|296838822|gb|EFH22760.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
          Length = 561

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMINSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVGIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|290473875|ref|YP_003466749.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
 gi|289173182|emb|CBJ79955.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
          Length = 557

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  DEIDVALDAVEDGFGETILSREKAKRHEAWLMLEKAYEEAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGTIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATQVLN 496

Query: 666 EGDTVWVKLLDFDDRGKI-KLSMKVVDQNTGKPIV 699
            GD V  K +  D + +I  LS++  D+   K  +
Sbjct: 497 VGDEVEAKYVGVDRKNRIVNLSVRAKDEADEKDAI 531



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------AHLEGKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSAERDQL----LENLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +    T RV  +      +    G+ G V    ++ T   +          
Sbjct: 267 WVAIAKRYPESTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +   +    N   +G++  + DFG F+ 
Sbjct: 327 VVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKNDRVEGKIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 383 LDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGIKQLAEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|115929959|ref|XP_001193417.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8,
           partial [Strongylocentrotus purpuratus]
          Length = 784

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-- 643
           + DD G       S  E    + + R  +  PEV ++Y+G+V  VM +G FV     R  
Sbjct: 130 DRDDGGKEAEGGDSRKEKYNDKFVDRPPSLEPEVGEVYEGKVTSVMQYGCFVQLSLRRRC 189

Query: 644 DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +GLVHIS+L  E RVA+ +DVV +G  V VK+L      KI+LSMK VDQN+G+ +
Sbjct: 190 EGLVHISELRKEGRVAEVTDVVSKGQQVKVKVLSIAGT-KIRLSMKDVDQNSGEDL 244


>gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
          Length = 498

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 116/280 (41%), Gaps = 30/280 (10%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            S+A+ D G P    +A +   +    D  I+   +   +     +D     T+  I + 
Sbjct: 26  GSVAVDDLGSP-EAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGY-KTEGVIPSK 83

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------ 557
           ++ +K       ++ +  +     +     E   +LS+ R Q       +E +       
Sbjct: 84  ELSIKHDVDPFEVVNVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVV 143

Query: 558 ------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASS 598
                 +    +   IG+ G +   +VE             +  AK+   D     +   
Sbjct: 144 TGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLP 203

Query: 599 SLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             A +E  + E+ ++     +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 204 RRAWLEQTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHI 262

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 263 DHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|258574049|ref|XP_002541206.1| ATP-dependent RNA helicase DHX8 [Uncinocarpus reesii 1704]
 gi|237901472|gb|EEP75873.1| ATP-dependent RNA helicase DHX8 [Uncinocarpus reesii 1704]
          Length = 1223

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---D 644
           DD    +       +    R     + + P + KIY G+V  + +FGAFV+  G R   D
Sbjct: 224 DDYKERRSRRDRDDQDYFHRPPTPELDERPILYKIYDGRVTGIKEFGAFVNLQGVRGKVD 283

Query: 645 GLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           GLVH+S +    RV   SD+V  G  V VK++      +I LSMK VDQ TG+ +V
Sbjct: 284 GLVHVSSMQDGARVNHPSDLVSRGQPVKVKIVSI-QGTRIGLSMKEVDQVTGRDLV 338


>gi|157833853|pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures
          Length = 76

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 54/74 (72%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  V VK+L
Sbjct: 2   EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 61

Query: 676 DFDDRGKIKLSMKV 689
           + D +G+I+LS+K 
Sbjct: 62  EVDRQGRIRLSIKE 75


>gi|307136047|gb|ADN33898.1| ATP-dependent RNA helicase [Cucumis melo subsp. melo]
          Length = 953

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 60/93 (64%), Gaps = 3/93 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
             + ++  PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T R++   DVVK 
Sbjct: 259 RHQPVSHEPELYTVYKGRVSRVMDTGCFVQLNDFRGKEGLVHVSQIATRRISNAKDVVKR 318

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              V+VK++    + K+ LSM+ VDQ++GK ++
Sbjct: 319 DQEVYVKVISVSGQ-KLSLSMRDVDQHSGKDLL 350


>gi|329894499|ref|ZP_08270313.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC3088]
 gi|328923024|gb|EGG30349.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC3088]
          Length = 558

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 100/247 (40%), Gaps = 25/247 (10%)

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           +P+S+ V       +  GD+                +  +      G T +  +      
Sbjct: 48  IPMSQFVDANGECTLSIGDE--------------VQVALETVEDGFGETKLSREKAKRAE 93

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S   +  A    +  +  I  ++    +     +  F P      +    IR  + + GK
Sbjct: 94  SWKDLEAAHAGDEVVKGIINGKVKGGFTVDINSIRAFLPGSL---VDVRPIRETLHLEGK 150

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
            +   V +   K N      V ++  ++ E   + E    + ++ E   + KG V  + D
Sbjct: 151 ELDFKVIKLDQKRN-----NVVVSRRAVMEEANSVEREALLENLQEGMAV-KGVVKNLTD 204

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + V++L FD DR ++ L +K + 
Sbjct: 205 YGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVEVGQEIDVRVLKFDRDRNRVSLGLKQLG 263

Query: 692 QNTGKPI 698
           ++    I
Sbjct: 264 EDPWVEI 270



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
              V  + D+G F       +GLVH+S++    +    S +V+ GD V V +LD D +R 
Sbjct: 281 MATVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNVHPSKIVQLGDQVEVMVLDIDEERR 340

Query: 682 KIKLSMKVVDQNTG 695
           +I L +K   QN  
Sbjct: 341 RISLGIKQCQQNPW 354



 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +    +    +            G +  + DFG F+   G  D
Sbjct: 333 LDIDEERRRISLGIKQCQ----QNPWDAFAAQYNKGDKISGAIKSITDFGIFIGLEGNID 388

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S     +   V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 389 GLVHLSDISWNETGE-EAVRNFKKGDEIETVILSIDPERERISLGIKQLENDP 440



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V +V      V      +G++ ++ +S ER+       KEG
Sbjct: 439 DPFSNYVAENDRGAIVTGTVTEVDAKAVVVALADEVEGVLKVADISRERIEDARSAYKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           DTV  K++  D + + I LS+K  D    +  V
Sbjct: 499 DTVEAKIIAVDRKNRTIGLSVKAKDYEDEQEAV 531


>gi|53728751|ref|ZP_00348225.1| COG0539: Ribosomal protein S1 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|303251468|ref|ZP_07337644.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303252341|ref|ZP_07338507.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302648800|gb|EFL78990.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302649700|gb|EFL79880.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 554

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 23  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 82

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 83  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 142

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + +  G
Sbjct: 143 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVTG 196

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 197 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 255

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 256 LGLKQLGQDPWAAIA 270



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 352 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 409

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 410 KGDEVEAVVLQVDAVKERISLGIKQLESDP 439



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 263 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 322

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 323 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 354



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G+VV+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 438 DPFTNFVESTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITTVISAG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 498 DTIEAKYTGVDRKARVVNLSVRAKDE 523


>gi|209756498|gb|ACI76561.1| hypothetical protein ECs4249 [Escherichia coli]
 gi|209756504|gb|ACI76564.1| hypothetical protein ECs4249 [Escherichia coli]
          Length = 740

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|300722536|ref|YP_003711826.1| 30S ribosomal subunit protein S1 [Xenorhabdus nematophila ATCC
           19061]
 gi|297629043|emb|CBJ89628.1| 30S ribosomal subunit protein S1 [Xenorhabdus nematophila ATCC
           19061]
          Length = 557

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  DEIDVALDAVEDGFGETILSREKAKRHEAWLMLEKAYEEAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVNGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATQVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K +  D + + I LS++  D+   K  +
Sbjct: 497 VGDEVEAKYVGVDRKNRVINLSVRAKDEADEKDAI 531



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGIKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D+ R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|183597001|ref|ZP_02958494.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827]
 gi|188023656|gb|EDU61696.1| hypothetical protein PROSTU_00232 [Providencia stuartii ATCC 25827]
          Length = 777

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 95/268 (35%), Gaps = 28/268 (10%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S+AL+     +SK +A   +    +   F     +         
Sbjct: 485 VVEDCVNSVGVDLNTASVALLTRVAGLSKMIAQNVVNWRDENGRFADRKQLLKVTRLGPK 544

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    IT     +   G+                L  +    K +  +   L  
Sbjct: 545 AFEQCAGFLR-ITNGDNPLDASGVHPE-----AYPVVEKILETVRLPLKEIMGNSSVLNS 598

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
            +PR                 G   +  I+++      +D  G         A      E
Sbjct: 599 LSPRDFTTE----------QFGVPTVTDIIKE------LDKPGRDPRPEFKTATFAEGIE 642

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            +  +        I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD
Sbjct: 643 TMNDLVA----GMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGD 698

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK++D D  R +I LSM+ +D+  G
Sbjct: 699 IVKVKVMDVDIPRKRIALSMR-LDEQPG 725


>gi|126208220|ref|YP_001053445.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae L20]
 gi|126097012|gb|ABN73840.1| 30S ribosomal protein S1 [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 554

 Score = 97.7 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I  +E      + +V   D     ++      G + 
Sbjct: 23  VKGTVVAIQKGYVIVDTGFKSESSIPAEEFTNAQGELEVQVGDQVDVVLKAVEDGFGETV 82

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  ++  ++ KV     ++L      +    +    +R+
Sbjct: 83  VSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 142

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + GK +   V +   K N      V ++  ++ E E+ ++    + ++ E + +  G
Sbjct: 143 SLNLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESNQDRDEVLANLVEGS-VVTG 196

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD ++ ++ 
Sbjct: 197 TVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVAVGQEVTVKVLKFDKEKTRVS 255

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 256 LGLKQLGQDPWAAIA 270



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                      N    G++  + DFG F+   G  DGLVH+S +S    A   + V   K
Sbjct: 352 PWEHFAATHNKNDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEEAVRNYK 409

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +GD V   +L  D  + +I L +K ++ + 
Sbjct: 410 KGDEVEAVVLQVDAVKERISLGIKQLESDP 439



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +   I  G+VV+V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 438 DPFTNFVESTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATRDRVEDITAVISAG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           DT+  K    D + + + LS++  D+
Sbjct: 498 DTIEAKYTGVDRKARVVNLSVRAKDE 523



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 263 QDPWAAIAQNHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 322

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 323 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 354


>gi|15677167|ref|NP_274320.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
 gi|81784541|sp|Q9JZ44|RS1_NEIMB RecName: Full=30S ribosomal protein S1
 gi|7226541|gb|AAF41676.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
 gi|325208261|gb|ADZ03713.1| ribosomal protein S1 [Neisseria meningitidis NZ-05/33]
          Length = 561

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 15  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 74

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 75  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPG 134

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 135 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 186

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 187 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 244

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 245 KVLKFDQEKQRVSLGMKQLGEDPW 268



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 357



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 337 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 393

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 441



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 454 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 513

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 514 RSIKLSVKAKDAKESRE 530


>gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97]
 gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97]
 gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 481

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDAMVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|313890098|ref|ZP_07823733.1| putative ribosomal protein S1 [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121459|gb|EFR44563.1| putative ribosomal protein S1 [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 404

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356


>gi|126330536|ref|XP_001381726.1| PREDICTED: similar to zinc finger, CCHC domain containing 17,
           [Monodelphis domestica]
          Length = 246

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 63/92 (68%), Gaps = 4/92 (4%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDT 669
            S+ D+P++  I++G+VV V ++GAF+   G  + GLVH + +S+ RV K S++V  GD 
Sbjct: 7   ESLDDLPDLYTIFRGEVVTVTEYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDK 66

Query: 670 VWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           VWVKL+     +D+ K+ LSMKVV+Q TGK +
Sbjct: 67  VWVKLIGREMKNDKVKLSLSMKVVNQGTGKDL 98


>gi|318607824|emb|CBY29322.1| transcription accessory protein (S1 RNA-binding domain) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 794

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSM+ +D+  G+
Sbjct: 711 RKRIALSMR-LDEQPGE 726


>gi|226939798|ref|YP_002794871.1| 30S ribosomal protein S1 [Laribacter hongkongensis HLHK9]
 gi|226714724|gb|ACO73862.1| RpsA [Laribacter hongkongensis HLHK9]
          Length = 559

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      +   +  AL+  K     I  ++   L+    
Sbjct: 65  DFVTVALESLENGFGETKLSRDKAKRMAAWLELEEALEAGKILSGVISGKVKGGLTVMVN 124

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK I   V +   K N      V ++  ++ E  
Sbjct: 125 SIRAFLPGSL---VDVRPVKDTTPFEGKQIEFKVIKLDRKRN-----NVVVSRRAVLEET 176

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    +  + E   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 177 LGEERKALLESLKEGA-IVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVL 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GD V  K+L FD ++ ++ L +K + ++  
Sbjct: 235 AVGDEVEAKVLKFDQEKNRVSLGLKQLGEDPW 266



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV  GD V V +L+ D DR +
Sbjct: 281 GRVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVSLGDEVEVMILEIDEDRRR 340

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 341 ISLGMKQCMPNPWDD 355



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D                        +  
Sbjct: 315 VHPSK---VVSLGDEVEVMILE-------IDEDRRRISLGMKQCMPN---PWDDFSANYK 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
           + +KI +G +  + DFG F+   G  DGLVH+S LS   VA    +   K+GD V   +L
Sbjct: 362 KGDKI-RGAIKSITDFGVFIGLPGGIDGLVHLSDLSWS-VAGEEAIRNFKKGDEVEAMVL 419

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D D+ +I + +K ++ + 
Sbjct: 420 SIDTDKERISMGIKQLEGDP 439



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + KG +  V   GA V   G  +  +  S+L+ +RV     ++KEG+ +   +++ D 
Sbjct: 450 NSLVKGVIKSVDARGAVVMLEGDIEAYLPASELARDRVEDARSLLKEGEEIEALIINVDR 509

Query: 680 RGK-IKLSMKVVD 691
           + + +KLS+K  D
Sbjct: 510 KSRSVKLSIKAKD 522


>gi|82777566|ref|YP_403915.1| 30S ribosomal protein S1 [Shigella dysenteriae Sd197]
 gi|309787782|ref|ZP_07682392.1| ribosomal protein S1 [Shigella dysenteriae 1617]
 gi|81241714|gb|ABB62424.1| 30S ribosomal subunit protein S1 [Shigella dysenteriae Sd197]
 gi|308924181|gb|EFP69678.1| ribosomal protein S1 [Shigella dysenteriae 1617]
          Length = 557

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDSLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 IGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|325138272|gb|EGC60841.1| ribosomal protein S1 [Neisseria meningitidis ES14902]
 gi|325198453|gb|ADY93909.1| ribosomal protein S1 [Neisseria meningitidis G2136]
 gi|325200073|gb|ADY95528.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
 gi|325201988|gb|ADY97442.1| ribosomal protein S1 [Neisseria meningitidis M01-240149]
          Length = 559

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 445 SLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKV--------- 493
           +L  M+ G  I+  V  I      V  G     L D++  ++  G ++ KV         
Sbjct: 13  TLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKVGDFVTVTIE 72

Query: 494 -AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
                 G T +  +          +  A++        I  ++   L+     +  F P 
Sbjct: 73  SVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPG 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +    +++     GK I   V +   K N      V ++  ++ E     E    
Sbjct: 133 SL---VDVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKAL 184

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           + ++ E + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  
Sbjct: 185 LENLQEGS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEA 242

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTG 695
           K+L FD ++ ++ L MK + ++  
Sbjct: 243 KVLKFDQEKQRVSLGMKQLGEDPW 266



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 324 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 335 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 391

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 392 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+ + +RV   +  +KEGD V   ++  D + 
Sbjct: 452 LVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 512 RSIKLSVKAKDAKESRE 528


>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
 gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
          Length = 494

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S    +E  + E+  +     +  +I +G +  +++FG
Sbjct: 164 YIGQRIQAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGTISSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+H+S+LS + +   S+VVK GD V V++LD D DR +I LS+K   ++
Sbjct: 224 AFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKSTQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWQ 285



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +         +I KG+V K++ FG FV      +GL+HIS+L+   V     VVK G
Sbjct: 282 DPWQRFARTHVPGQIVKGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVDNPETVVKPG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           + V+VK++D D DR +I LS+K  +
Sbjct: 342 EEVFVKVIDVDLDRRRISLSLKQAN 366



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV I+D GTV     ++                 +   + +G VVK+      +     
Sbjct: 9   EKVAINDIGTVDDFIKAVDSTIK----------NFDDGDLVEGTVVKIDRDEVLLDIGYK 58

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
            +G++   +LS ++     DVV+ GDT+   ++   D  G++ LS K   
Sbjct: 59  TEGVIPSKELSIKKDVDPEDVVQVGDTIEALVVTKEDKDGRLILSKKRAQ 108


>gi|212709792|ref|ZP_03317920.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
           30120]
 gi|212687603|gb|EEB47131.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
           30120]
          Length = 582

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 91  DEIDVALDAVEDGFGETILSREKAKRHEAWLMLEKAYEEAETVTGVINGKVKGGFTVELN 150

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 151 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 202

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 203 SSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 260

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 261 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 296



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +     +   I  G+V+ V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 462 AEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELTLGVEGYLRASEASRDRVEDATLVLN 521

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  V
Sbjct: 522 VGDDVEAKYTGVDRKNRVINLSVRAKDEADEKDAV 556



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 137 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDQKRN 189

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 190 NV-VVSRRAVIESESSAERDQL----LENLQEGMEVK--------GIVKNLTDYGAFVDL 236

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 237 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRERTRVSLGLKQLGEDP 291

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 292 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 351

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +   +        +G++  + DFG F+ 
Sbjct: 352 VVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRVEGKIKSITDFGIFIG 407

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 408 LDGGIDGLVHLSDISWN-VAGEEAVRDYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 465



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 247 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 306

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 307 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 366

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 367 ISLGLKQCKSNPWQ 380


>gi|332163332|ref|YP_004299909.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667562|gb|ADZ44206.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862987|emb|CBX73120.1| protein yhgF [Yersinia enterocolitica W22703]
          Length = 794

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSM+ +D+  G+
Sbjct: 711 RKRIALSMR-LDEQPGE 726


>gi|118443587|ref|YP_877456.1| 30S ribosomal protein S1 [Clostridium novyi NT]
 gi|118134043|gb|ABK61087.1| rpsA [Clostridium novyi NT]
          Length = 387

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 70/111 (63%), Gaps = 6/111 (5%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G + ++  ++ E     +   +++   +VN I +G+VVK++DFGAFV   G  +GLVH
Sbjct: 260 DTGKIALSLKNVEE-----DPWNNVSSKFKVNDIVEGKVVKLLDFGAFVEILGGVEGLVH 314

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           I++++ E +AK SDV+K+GD V VK+L+ ++   +I LS+K  +    + I
Sbjct: 315 ITEITDENIAKPSDVLKKGDKVKVKILEINENDKRIALSIKDAENKVAEEI 365



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 13/187 (6%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +  A +        +   +   +      +  F P      I    +++V    GK 
Sbjct: 104 WDTLKDAFKNGTILEAKVDEVVKGGVVSYINGIRAFIPAS---QISASFVKDVKVFLGKT 160

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMD 632
           ++  V +   K         K+  S+        E  +       +  +   G V ++  
Sbjct: 161 LKVKVIEFDGK-------KNKVVLSAKEVELKEIENKKQKVLASLKKGEKRSGVVRRLAK 213

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           FGAFV   G  DGL+H S LS ERV   SDVVK GD V V +LDF  D GKI LS+K V+
Sbjct: 214 FGAFVDL-GGVDGLIHNSDLSWERVNNPSDVVKVGDKVEVYVLDFHKDTGKIALSLKNVE 272

Query: 692 QNTGKPI 698
           ++    +
Sbjct: 273 EDPWNNV 279



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K+   S+ +I  A +          V  I +G+V+ V      V+     DG++  +++ 
Sbjct: 5   KVQEESMQDIMEAIDKTMEPIY---VGDIIEGEVISVSQNEVLVNIGYITDGVIKKNEVC 61

Query: 654 TERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           ++   +  D++K GD V V ++   D  G + LS K  D
Sbjct: 62  SDD-EELKDILKSGDKVDVYIVKINDGEGNVLLSKKKAD 99


>gi|296393091|ref|YP_003657975.1| RNA binding S1 domain-containing protein [Segniliparus rotundus DSM
           44985]
 gi|296180238|gb|ADG97144.1| RNA binding S1 domain protein [Segniliparus rotundus DSM 44985]
          Length = 482

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++   K+   D     +  S  A +E  +  +R+   +  +   I KG +  +++FG
Sbjct: 164 YIGKEIETKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNRLQKGNIKKGVISSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VVK GD V V++LD D  R ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 22/208 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  R++   I    I +++  G 
Sbjct: 165 IGKEIETKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNRLQKGNIKKGVISSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTV-----KIASSSLAEIEAA--REMI 610
            V       +  + E +   ++       + D+ TV       +   ++    A   +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I +G+V K++ FGAFV      +GLVHIS+LS   + +   VV   D V
Sbjct: 285 RHFARTHAIGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELSERHIEQPESVVAVDDAV 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VK++D D +R +I LS+K  +++  + 
Sbjct: 345 LVKVIDIDLERRRISLSIKQANEDYPEE 372



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     S+VV  GD V   +L   D 
Sbjct: 37  DIVSGTIVKVERDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDVVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|157372859|ref|YP_001480848.1| RNA-binding S1 domain-containing protein [Serratia proteamaculans
           568]
 gi|157324623|gb|ABV43720.1| RNA binding S1 domain protein [Serratia proteamaculans 568]
          Length = 777

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ 
Sbjct: 648 QPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVMEV 707

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I LSM+ +D+  G+
Sbjct: 708 DLQRKRIALSMR-LDEQPGE 726


>gi|328949606|ref|YP_004366941.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328449930|gb|AEB10831.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 123

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   I +G+V ++MDFGAFV       GLVHIS+++ E V    D + EG TV V +
Sbjct: 1   MKVEAGSIVEGRVTRIMDFGAFVELPNGESGLVHISEIAHEFVKNVHDYLTEGQTVQVFV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L  D +G++ LS+K +     +P
Sbjct: 61  LGRDHKGRLDLSIKELLPKPVEP 83


>gi|255526510|ref|ZP_05393420.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296185879|ref|ZP_06854285.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7]
 gi|255509829|gb|EET86159.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296049547|gb|EFG88975.1| 30S ribosomal protein S1 [Clostridium carboxidivorans P7]
          Length = 388

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            +     D +   +S  ++  A   A+  + H+LN +     E R  +     +     +
Sbjct: 165 KVIEFDKDKEKVVLSRKVIEKAE--AEEKKQHLLNSIKP--GEKRSGVVSRLAKFGAF-V 219

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE-------MIR 611
               +  +I +        V      V++ D   V I S      + A            
Sbjct: 220 DLGGVDGLIHVSELS-WKRVNNPADVVSVGDKVEVYILSVDKENNKIALALKDVNENPWE 278

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S+ +  ++  + +G+V+K+  FGAFV      +GLVHIS++S ER+AK SDV+  GD V 
Sbjct: 279 SVGNKFKIGDVVEGEVLKLASFGAFVEIQPGVEGLVHISEISEERIAKPSDVLNLGDKVR 338

Query: 672 VKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           VK+LD D++  +I LS+K   +   + +
Sbjct: 339 VKILDIDNKENRISLSIKDAVEKPKEDL 366



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            ++   E I S        ++ KG+++ V +  A V+     DG++  S++        S
Sbjct: 10  SMKEFMEDIESSMKSIRRGEVVKGKIISVTENHAIVNIGYMSDGILSKSEVVENEEDNLS 69

Query: 662 DVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQ 692
           D++KE + ++V +LD  D  G + LS K  D+
Sbjct: 70  DILKENEEIYVYVLDMNDGEGNVLLSKKAADK 101


>gi|123444176|ref|YP_001008146.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091137|emb|CAL14020.1| putative transcription accessory protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 794

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSM+ +D+  G+
Sbjct: 711 RKRIALSMR-LDEQPGE 726


>gi|329298228|ref|ZP_08255564.1| 30S ribosomal protein S1 [Plautia stali symbiont]
          Length = 557

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV    ++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPGEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYITLNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASLDRIEDATQVLS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  DQ   K  +
Sbjct: 497 VGDDVKAKFTGVDRKNRVVSLSVRAKDQADEKEAI 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 94/255 (36%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K       I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPGEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-D 679
           +G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +L  D +
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--ATGEEAVREYKKGDEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K + ++ 
Sbjct: 426 RERISLGVKQLAEDP 440



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+  G  VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPGEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|302306315|ref|NP_982561.2| AAR020Wp [Ashbya gossypii ATCC 10895]
 gi|299788458|gb|AAS50385.2| AAR020Wp [Ashbya gossypii ATCC 10895]
          Length = 1111

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVK 665
           M   +   P   KIY+  +  +  FG F    G +   +GL+HISQLS  RV   +DVV 
Sbjct: 172 MEPELDVTPIEGKIYRAVIRNIKPFGCFARVLGTKRSCEGLIHISQLSHSRVGSPNDVVS 231

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            GD V+VK+    D GK+ LSM+ VDQ TG+
Sbjct: 232 VGDHVYVKITKVQDNGKLSLSMREVDQATGQ 262


>gi|269792637|ref|YP_003317541.1| RNA binding S1 domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100272|gb|ACZ19259.1| RNA binding S1 domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 504

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++++    +++   +VV++ DFGAFV      +GL+HISQLS +RV K SDV++EG
Sbjct: 369 DPWANVSEKYSKDQVVTVKVVRLADFGAFVEIEDGVEGLIHISQLSRQRVEKPSDVLREG 428

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
             V  K+L+ +    +I+LS++ +++ TG
Sbjct: 429 QEVQAKILEVNPSEKRIRLSLRALEEPTG 457



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV------MALQQAKRGRL 529
           + ++ G     G +     G +  I    +  +  GI+   +V        +++ +R R 
Sbjct: 125 VIEVEGIRKVKGGLIVDCCGLEGFIPISHLAEEGRGINPANLVGKTFPVKLVEKDRRKRR 184

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-------IRGIVEQTG 582
            +L+  S +  E      EF   V    I   ++ ++   G  V       +  I E + 
Sbjct: 185 LVLSRRSILDEEMASLREEFYANVHEGDILEGEVSSITSFGVFVNLGAMEGLVHITELSW 244

Query: 583 AK-------VNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVV 628
            +       V   D   VK+               +A  +    +T    V +  KG V 
Sbjct: 245 QRGAKAKDLVQKGDKVKVKVIGIDRENNRVSLSLKQAQEDPWVGVTSRWTVGQRTKGVVT 304

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + DFGAFV      +GL+HI  LS  RV    +V+K+G  V V +L+ D DR +I L +
Sbjct: 305 NLADFGAFVEIEPGVEGLIHIGDLSWSRVKHPKEVLKKGQEVEVVILEVDGDRRRIGLGL 364

Query: 688 KVVDQN 693
           K ++  
Sbjct: 365 KQLNDP 370



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            E+ + RE   +         I +G+V  +  FG FV+  GA +GLVHI++LS +R AK 
Sbjct: 195 EEMASLREEFYANVHE---GDILEGEVSSITSFGVFVNL-GAMEGLVHITELSWQRGAKA 250

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D+V++GD V VK++  D +  ++ LS+K   ++  
Sbjct: 251 KDLVQKGDKVKVKVIGIDRENNRVSLSLKQAQEDPW 286


>gi|169824523|ref|YP_001692134.1| fused penicillin tolerance LytB domain-containing protein/30S
           ribosomal protein S1 [Finegoldia magna ATCC 29328]
 gi|302380664|ref|ZP_07269129.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna ACS-171-V-Col3]
 gi|167831328|dbj|BAG08244.1| fusion penicillin tolerance LytB domain and 30S ribosomal protein
           S1 [Finegoldia magna ATCC 29328]
 gi|302311607|gb|EFK93623.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 675

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++   +  +      + +G+VV ++DFGAFV      +GLVH+S++S E V K SD + 
Sbjct: 538 QQKPFDAFVENNHEGDVIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELN 597

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            GDTV VK+L+ + ++ +I LSMK +     KP
Sbjct: 598 IGDTVKVKILEINPEKKRIALSMKALLPKPEKP 630



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + E    KV NID+     + S         +E+     +   V +   G+V ++ DF
Sbjct: 421 KYVGETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWENITVGEKITGKVQRLTDF 480

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL+HIS +S  R+    DV+K GD +   +L  + ++ +I L +K + Q
Sbjct: 481 GAFIDL-GGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQLQQ 539

Query: 693 NT 694
             
Sbjct: 540 KP 541



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E +    +     +I KG+V+ V D    V+     DG++ + +LSTE      D+ K+
Sbjct: 280 MEQVEESMNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQ 339

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           GD + V ++  DD  G + LS K V+
Sbjct: 340 GDEIEVYVIKLDDGEGNVVLSTKRVE 365


>gi|30065310|ref|NP_839481.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T]
 gi|56480331|ref|NP_709180.2| hypothetical protein SF3426 [Shigella flexneri 2a str. 301]
 gi|30043572|gb|AAP19292.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T]
 gi|56383882|gb|AAN44887.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 740

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
          Length = 479

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  +++  AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|606342|gb|AAA58205.1| ORF_o622; reading frame open far upstream of start; possible
           frameshift, linking to previous ORF [Escherichia coli
           str. K-12 substr. MG1655]
          Length = 622

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 466 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 525

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 526 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 576


>gi|297588505|ref|ZP_06947148.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Finegoldia magna ATCC 53516]
 gi|297573878|gb|EFH92599.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Finegoldia magna ATCC 53516]
          Length = 675

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++   +  +      + +G+VV ++DFGAFV      +GLVH+S++S E V K SD + 
Sbjct: 538 QQKPFDAFVENNHEGDVIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELN 597

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            GDTV VK+L+ + ++ +I LSMK +     KP
Sbjct: 598 IGDTVKVKILEINPEKKRIALSMKALLPKPEKP 630



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + E    KV NID+     + S         +E+     +   V +   G+V ++ DF
Sbjct: 421 KYVGETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWENITVGETITGKVQRLTDF 480

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL+HIS +S  R+    DV+K GD +   +L  + ++ +I L +K + Q
Sbjct: 481 GAFIDL-GGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQLQQ 539

Query: 693 NT 694
             
Sbjct: 540 KP 541



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E +    +     +I KG+V+ V D    V+     DG++ + +LSTE      D+ K+
Sbjct: 280 MEQVEESMNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQ 339

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           GD + V ++  DD  G + LS K V+
Sbjct: 340 GDEIEVYVIKLDDGEGNVVLSTKRVE 365


>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 262

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR     R    Q G      GS+    G T+ IV V  G RE ++   ++  +  
Sbjct: 39  PRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSV-FGPRESKK---AMLYSDT 94

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                  ++   ATG   +          +  +  +A+   +        T+ + + + E
Sbjct: 95  GRLNCSVSYTTFATGIRGQGLENK----EYSGMLHKALEGAVMLHTFPKTTVDVFALVLE 150

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S GS     +  +SLAL DAG+ +   V  +++  +       ++ D + DE+       
Sbjct: 151 SGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKN----VIIDPTSDEEAWQDGGL 206

Query: 492 KVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            V+       IT +      G  ++  +  A++        +   + + L + 
Sbjct: 207 MVSYMPARKEITQL---TLTGEWTDGKITNAVELCMDACSKLCEILRERLKDP 256



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 75/200 (37%), Gaps = 16/200 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G+T V+ +V   R  K      D   L  +    T+A G    G   +E  
Sbjct: 62  ASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCSVSYTTFATGIRGQGLENKE-- 119

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P ++S   AS AL  +G+
Sbjct: 120 ---YSGMLHKALEGAV--MLHTFPKTTVDVFALVLESGGSDLPIIISC--ASLALADAGI 172

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V    V  +    +++P  DE+    G L +         +       + ++  +
Sbjct: 173 MMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGL-MVSYMPARKEITQLTLTGEWTDGKI 231

Query: 201 LDAIIFGHNECKPVIEAISK 220
            +A+    + C  + E + +
Sbjct: 232 TNAVELCMDACSKLCEILRE 251


>gi|82545762|ref|YP_409709.1| hypothetical protein SBO_3394 [Shigella boydii Sb227]
 gi|81247173|gb|ABB67881.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 740

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|254429454|ref|ZP_05043161.1| ribosomal protein S1 [Alcanivorax sp. DG881]
 gi|196195623|gb|EDX90582.1| ribosomal protein S1 [Alcanivorax sp. DG881]
          Length = 482

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +          +  A  + +  +  I  ++    +     +  F P      +
Sbjct: 2   GFTRLSREKAKRAEVWGELEKAFDEDEIVKGMISGKVKGGFTVDIGPIRAFLPGSL---V 58

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               +R+V  + GK +   V +   K N      V ++  ++ E E + E  + +  + E
Sbjct: 59  DIRPVRDVAHLEGKELDFKVIKLDPKRN-----NVVVSRRAVMEAEHSAEREQLLESLQE 113

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V+ G  + VK+L FD
Sbjct: 114 GMEV-KGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEIVEVGQEIDVKVLKFD 171

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ ++ L +K + ++    IV
Sbjct: 172 REKMRVSLGLKQLGEDPWHDIV 193



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I          K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 187 DPWHDIVGKYPEGTRVKAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVEI 246

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D DR +I L +K    N  
Sbjct: 247 GDEVEVMILDIDEDRRRISLGIKQCQSNPW 276



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  V    A V      +G +  S++S +RV   ++V+K GD V  K+ + D + 
Sbjct: 375 IVKGVVKAVDAKAATVELAENVEGTLRASEISRDRVNDATEVLKVGDEVEAKITNVDRKN 434

Query: 682 KI-KLSMKVVDQNTGKPIV 699
           ++  LS+K  DQ   +  V
Sbjct: 435 RVLSLSIKSKDQADEREAV 453



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G  +  ++      ++ID+D           +         +     
Sbjct: 238 IHPSKVVEI----GDEVEVMI------LDIDEDRRRISLGIKQCQSN----PWDAFEQKY 283

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK---EGDTVWVKL 674
           +  +   G++  + DFG F+   G  DGLVH+S +S E   +  D V+   +GD +   +
Sbjct: 284 QKGERISGKIKSITDFGIFIGLEGGIDGLVHLSDISWE--EQGEDAVRNFNKGDELETVV 341

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K +  + 
Sbjct: 342 LSIDAERERISLGIKQLTDDP 362


>gi|303233770|ref|ZP_07320424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna BVS033A4]
 gi|302495204|gb|EFL54956.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
           magna BVS033A4]
          Length = 675

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++   +  +      + +G+VV ++DFGAFV      +GLVH+S++S E V K SD + 
Sbjct: 538 QQKPFDAFVENNHEGDVIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHVDKPSDELN 597

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            GDTV VK+L+ + ++ +I LSMK +     KP
Sbjct: 598 IGDTVKVKILEINPEKKRIALSMKALLPKPEKP 630



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDF 633
           + + E    KV   D+   ++  S  A +EA R+ I         V +   G+V ++ DF
Sbjct: 421 KYVGETLVCKVLNIDEKKRRLVLSHRAVVEAERKEIEDKAWENITVGEKITGKVQRLTDF 480

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL+HIS +S  R+    DV+K GD +   +L  + ++ +I L +K + Q
Sbjct: 481 GAFIDL-GGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQLQQ 539

Query: 693 NT 694
             
Sbjct: 540 KP 541



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E +    +     +I KG+V+ V D    V+     DG++ + +LSTE      D+ K+
Sbjct: 280 MEQVEESMNKIYPKEIVKGEVIYVTDDEVMVNIGYKADGIIKLDELSTEEGKLPKDLYKQ 339

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           GD + V ++  DD  G + LS K V+
Sbjct: 340 GDEIEVYVIKLDDGEGNVVLSTKRVE 365


>gi|281180439|dbj|BAI56769.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 740

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|168747115|ref|ZP_02772137.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753160|ref|ZP_02778167.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168765755|ref|ZP_02790762.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772701|ref|ZP_02797708.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779491|ref|ZP_02804498.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168797178|ref|ZP_02822185.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC508]
 gi|195934896|ref|ZP_03080278.1| S1 RNA-binding domain-containing protein [Escherichia coli O157:H7
           str. EC4024]
 gi|208807890|ref|ZP_03250227.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814038|ref|ZP_03255367.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820215|ref|ZP_03260535.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398543|ref|YP_002272842.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|254795322|ref|YP_003080159.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|187771459|gb|EDU35303.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188018336|gb|EDU56458.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002506|gb|EDU71492.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189359374|gb|EDU77793.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364528|gb|EDU82947.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189380095|gb|EDU98511.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208727691|gb|EDZ77292.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735315|gb|EDZ84002.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740338|gb|EDZ88020.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159943|gb|ACI37376.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|254594722|gb|ACT74083.1| predicted transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|326344619|gb|EGD68368.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. 1125]
          Length = 773

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|320546631|ref|ZP_08040943.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
 gi|320448686|gb|EFW89417.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
          Length = 398

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVGNPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+LD + D  ++ LS+K +++   +
Sbjct: 328 EVKVKVLDVNADAERVSLSIKALEERPAQ 356


>gi|308188423|ref|YP_003932554.1| RNA binding protein [Pantoea vagans C9-1]
 gi|308058933|gb|ADO11105.1| putative RNA binding protein [Pantoea vagans C9-1]
          Length = 775

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 651 MILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
          Length = 480

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  +++  AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|284007586|emb|CBA73155.1| 30S ribosomal protein S1 [Arsenophonus nasoniae]
          Length = 569

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 78  DEIDVALDAVEDGFGETILSREKAKRHEAWLMLEKAYEDAETVMGIINGKVKGGFTVELK 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 SSAERDHLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 248 NVGDEINVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 283



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +     +   I  G+VV V   GA +      +G +  S+ S +RV  T+ V+ 
Sbjct: 449 AEDPFNNYLSAHKKGVIVTGKVVAVDAKGATIELAAGVEGHLRASEASRDRVEDTTQVLN 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GDTV  K    D + + I LS++  D+   K  +
Sbjct: 509 VGDTVEAKYTGVDRKNRIITLSVRAKDEADEKDAI 543



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +        +   +    N   +G++  + DFG F+   G  D
Sbjct: 345 LDIDEERRRISLGLKQCKPN----PWQQFAETHNKNDRVEGKIKSITDFGIFIGLEGGID 400

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 401 GLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 452



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 277 DPWVAIAKRYPEGTKLTGKVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 336

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L +K    N  +
Sbjct: 337 GDVVEVMVLDIDEERRRISLGLKQCKPNPWQ 367


>gi|326203351|ref|ZP_08193216.1| Tex-like protein [Clostridium papyrosolvens DSM 2782]
 gi|325986609|gb|EGD47440.1| Tex-like protein [Clostridium papyrosolvens DSM 2782]
          Length = 718

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 106/265 (40%), Gaps = 20/265 (7%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ES G      V    + L  A  P+   V+GI+  + K+  ++   +      + L  + 
Sbjct: 470 ESLGGVVEDCVNNVGVDLNTASAPLLSYVSGISSAIAKNVVEYREENGKFKARNELKKVK 529

Query: 491 FKVAGTDSGITAMQMDMKIGGISEN--IMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
                T             G I +N  +   + + AK    ++   +  V  +    L  
Sbjct: 530 KLGNKTFEQCAGFLRITDGGNILDNTSVHPESYKAAKLLLENMGYSLEDVKDKKLAGLDT 589

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              +  +      Q+   +G+G   ++ I+ E      +  D+    +  S +  +E   
Sbjct: 590 KVVQTGM-----SQVAEKLGIGIPTLKDIINELLKPGRDPRDELPKPMLHSDVLNME--- 641

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +   I  G V  V DFGAFV     +DGLVHISQL+ + V    DVV  G
Sbjct: 642 --------DLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNPMDVVAVG 693

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V VK+++ D +R +I L+M+ ++
Sbjct: 694 DIVKVKVIEVDVERKRISLTMREIN 718


>gi|309785848|ref|ZP_07680479.1| protein yhgF [Shigella dysenteriae 1617]
 gi|308926968|gb|EFP72444.1| protein yhgF [Shigella dysenteriae 1617]
          Length = 773

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|170717701|ref|YP_001784774.1| 30S ribosomal protein S1 [Haemophilus somnus 2336]
 gi|168825830|gb|ACA31201.1| ribosomal protein S1 [Haemophilus somnus 2336]
          Length = 547

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 108/259 (41%), Gaps = 25/259 (9%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKV----------AGTDSGITA 502
           ++  V  I  G V         + I  +E  +  G +D KV               G T 
Sbjct: 24  VNATVVAIEKGFVYVDAGLKSEARIPAEEFQNAQGELDVKVGDVVNVALDAVEDGFGETK 83

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +  +  +   S   +  A ++       I  ++    +     +  F P   +   P  +
Sbjct: 84  LSREKAVRQESWIDLEKAYEEQATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRPTRE 143

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
             +++G          EQ    + +D     V ++  ++ E E ++E    + ++ E ++
Sbjct: 144 ADHLLGK---------EQEFKVIKLDQKRNNVVVSRRAVIESENSQEREEILANLAEGSE 194

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++ +RV    ++V  GD + VK+L FD D+
Sbjct: 195 V-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPGEIVSVGDEITVKVLKFDKDK 252

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            ++ L +K + Q+    I 
Sbjct: 253 TRVSLGLKQLGQDPWVAIA 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+  G  V++ D+ TVK+      +   +       ++   +I +   VN    
Sbjct: 222 DMAWKRVKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQDPWVAIAENHPVNSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILEGVEGLVHVSEMDWTNKNIHPSKVVHLGDVVEVMVLEIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K    N  
Sbjct: 342 ISLGLKQCKPNPW 354



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 125/365 (34%), Gaps = 56/365 (15%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           +EQ   +  ++G  +  F +  N    FLP +  +         RE  H     +    V
Sbjct: 103 EEQATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRPT-----READHLLGKEQEFK-V 156

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +    +    +     + ES+ S     +    LA +  G  +         G VK+  D
Sbjct: 157 IKLDQKRNNVVVSRRAVIESENSQEREEI----LANLAEGSEVK--------GTVKNLTD 204

Query: 473 FIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR-- 528
           +    D+ G +   H+  M +K       I ++        I+  ++     + +     
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPGEIVSVG-----DEITVKVLKFDKDKTRVSLGL 259

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             +  +    ++E+     + T +V  +      +  + G+ G V   + E      NI 
Sbjct: 260 KQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFVEILEGVEGLV--HVSEMDWTNKNIH 317

Query: 589 DDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVMDF 633
               V +       +    E  R                  +         G++  + DF
Sbjct: 318 PSKVVHLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVSGKIKSITDF 377

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFDD-RGKIKLSMKV 689
           G F+   G  DGLVH+S +S        + V   K+GD V   +L  D  + +I L +K 
Sbjct: 378 GIFIGLEGGIDGLVHLSDISWNIPG--EEAVRNYKKGDEVEAVVLQVDSAKERISLGIKQ 435

Query: 690 VDQNT 694
           ++++ 
Sbjct: 436 LEEDP 440



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   +   +VV+V   GA V      +G +  + LS E        V  G
Sbjct: 439 DPFNNFIAVNKKGAVVSAKVVEVDAKGAKVELVSGVEGYIRTADLSNE--------VVVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
          Length = 291

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL------ 366
           R+DGR    +R + AQ+       GSS F  G T+ + VVT G  E +Q           
Sbjct: 14  RVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVT-GPSEQQQAQVQAQRRGAQ 72

Query: 367 -SGTQRNDFMMHYNFLPCATGEVSRMGA---PSRREIGHGRLARR--------------- 407
            SG      +++      ++ +  + G       REI H  L  R               
Sbjct: 73  ASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAK 132

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG-- 465
           A+   +        ++ +   +   DGS   A +  ++LA++DAG+P++  +A    G  
Sbjct: 133 ALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAGST 192

Query: 466 --LVKDGDDFIILSDISGDEDHLG 487
                  D    L D++  E+   
Sbjct: 193 SSYAAGDDSADPLLDLNNQEEQEL 216



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 41/238 (17%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK-------------DGQDFFPLTVNYQER-TYAVGK 72
           +DG+     G T V+  V      +              G+D   + VN       +V +
Sbjct: 36  ADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQASGRDAASIIVNVVIAGFSSVDR 95

Query: 73  IPGGYLRRESRP------------TENEILISRMIDRSIRPLFSK--CYKNETQVIINVM 118
              G   +E                     I   I +++           +   V ++V+
Sbjct: 96  KKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAKALSSTVHTHLFPHSSITVSLHVL 155

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVD----YINGQYVLNPRLD---EDQ 171
             D   S     + AA+ A++ +G+P    +          Y  G    +P LD   +++
Sbjct: 156 SQDG--SLLAALINAATLAVIDAGIPMTDYIAACTAGSTSSYAAGDDSADPLLDLNNQEE 213

Query: 172 GSL-DLFVS--GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             L  L V+  G  D V+ +  E+  +    +   ++ G + CK V   + K  K   
Sbjct: 214 QELPFLTVASLGDSDRVVALVCESR-VQVSRLEGMLVVGLDGCKQVKMFLDKTIKDRG 270


>gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 480

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  +++  AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|168759432|ref|ZP_02784439.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168785212|ref|ZP_02810219.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC869]
 gi|217325495|ref|ZP_03441579.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|261224688|ref|ZP_05938969.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254417|ref|ZP_05946950.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189369948|gb|EDU88364.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374245|gb|EDU92661.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC869]
 gi|217321716|gb|EEC30140.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|320191582|gb|EFW66232.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|326337630|gb|EGD61465.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. 1044]
          Length = 773

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|113461119|ref|YP_719187.1| 30S ribosomal protein S1 [Haemophilus somnus 129PT]
 gi|112823162|gb|ABI25251.1| SSU ribosomal protein S1P [Haemophilus somnus 129PT]
          Length = 547

 Score = 97.3 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 108/259 (41%), Gaps = 25/259 (9%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKV----------AGTDSGITA 502
           ++  V  I  G V         + I  +E  +  G +D KV               G T 
Sbjct: 24  VNATVVAIEKGFVYVDAGLKSEARIPAEEFQNAQGELDVKVGDVVNVALDAVEDGFGETK 83

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +  +  +   S   +  A ++       I  ++    +     +  F P   +   P  +
Sbjct: 84  LSREKAVRQESWIDLEKAYEEQATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRPTRE 143

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
             +++G          EQ    + +D     V ++  ++ E E ++E    + ++ E ++
Sbjct: 144 ADHLLGK---------EQEFKVIKLDQKRNNVVVSRRAVIESENSQEREEILANLAEGSE 194

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V  + D+GAFV   G  DGL+HI+ ++ +RV    ++V  GD + VK+L FD D+
Sbjct: 195 V-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPGEIVSVGDEITVKVLKFDKDK 252

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            ++ L +K + Q+    I 
Sbjct: 253 TRVSLGLKQLGQDPWVAIA 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+  G  V++ D+ TVK+      +   +       ++   +I +   VN    
Sbjct: 222 DMAWKRVKHPGEIVSVGDEITVKVLKFDKDKTRVSLGLKQLGQDPWVAIAENHPVNSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILEGVEGLVHVSEMDWTNKNIHPSKVVHLGDVVEVMVLEIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K    N  
Sbjct: 342 ISLGLKQCKPNPW 354



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 125/365 (34%), Gaps = 56/365 (15%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           +EQ   +  ++G  +  F +  N    FLP +  +         RE  H     +    V
Sbjct: 103 EEQATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRPT-----READHLLGKEQEFK-V 156

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +    +    +     + ES+ S     +    LA +  G  +         G VK+  D
Sbjct: 157 IKLDQKRNNVVVSRRAVIESENSQEREEI----LANLAEGSEVK--------GTVKNLTD 204

Query: 473 FIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR-- 528
           +    D+ G +   H+  M +K       I ++        I+  ++     + +     
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPGEIVSVG-----DEITVKVLKFDKDKTRVSLGL 259

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             +  +    ++E+     + T +V  +      +  + G+ G V   + E      NI 
Sbjct: 260 KQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFVEILEGVEGLV--HVSEMDWTNKNIH 317

Query: 589 DDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVMDF 633
               V +       +    E  R                  +         G++  + DF
Sbjct: 318 PSKVVHLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVSGKIKSITDF 377

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFDD-RGKIKLSMKV 689
           G F+   G  DGLVH+S +S        + V   K+GD V   +L  D  + +I L +K 
Sbjct: 378 GIFIGLEGGIDGLVHLSDISWNIPG--EEAVRNYKKGDEVEAVVLQVDSAKERISLGIKQ 435

Query: 690 VDQNT 694
           ++++ 
Sbjct: 436 LEEDP 440



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   +   +VV+V   GA V      +G +  + LS E        V  G
Sbjct: 439 DPFNNFIAVNKKGAVVSAKVVEVDAKGAKVELGIGVEGYIRTADLSNE--------VVVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
 gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
          Length = 487

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             V VK++D D +R +I LS+K  D++  + 
Sbjct: 340 QEVMVKVIDIDLERRRISLSVKQADEDYSEE 370



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T  +V I+D GT   A   LA ++A  +             I  G VVKV      +   
Sbjct: 5   TTPQVAINDIGT---AEDFLAAVDATIKYFND-------GDIVGGTVVKVDHDEVLLDIG 54

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +      +VV+ GD V   +L   D  G++ LS K   
Sbjct: 55  YKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKEDKEGRLILSKKRAQ 106


>gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
          Length = 391

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      E A +  +      +  ++ +G V ++ DFGAFV   G  D
Sbjct: 165 IEIDPVKNKLILSRKAVLDEEADQRKQETLAGLQPGQVMEGTVQRLTDFGAFVDI-GGVD 223

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           GLVH+S+L+  RV   S+V+ EGD V VK+L  D +  +I LS+K       + +
Sbjct: 224 GLVHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQNERISLSIKETQPGPWEKV 278



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +++  +   I  G V +++ FGAFV      +GLVHISQ+S   +A  S+ ++EG 
Sbjct: 274 PWEKVSEEIKAGDIVTGTVKRLVSFGAFVEVYQGVEGLVHISQISRRHIATPSEELEEGQ 333

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V VK+LD   ++ +I LS+K
Sbjct: 334 EVRVKVLDMQPEQKRISLSIK 354



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679
            I KG+V KV D    V      DG++ IS+LS+  V K SDV+ EGD V VK++   D+
Sbjct: 28  DIVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSLHVDKASDVLSEGDEVEVKVIRINDE 87

Query: 680 RGKIKLSMKVVDQN 693
             K+ LS K VD +
Sbjct: 88  EDKLVLSKKAVDAD 101


>gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
          Length = 486

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V VK++D D +R +I LS+K  D++
Sbjct: 340 QEVMVKVIDIDLERRRISLSVKQADED 366



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
          Length = 479

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  +++  AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
 gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
          Length = 486

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGRVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  D++
Sbjct: 340 DEAMVKVIDIDLERRRISLSLKQADED 366



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|262274461|ref|ZP_06052272.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
 gi|262221024|gb|EEY72338.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
          Length = 556

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAIEDGFGETQLSREKAKRHEAWIQLEKAYEEAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLASLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           D D+ R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 133/368 (36%), Gaps = 60/368 (16%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E E  +  ++G  +  F +  N    FLP +  +V  +            L  + +   
Sbjct: 103 EEAETVIGIINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------AHLEGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     +    LA +  G+ +         G+VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESENSVERDEL----LASLQEGMEVK--------GIVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        I+  ++     + +   
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRDRTRVSL 257

Query: 529 --LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV- 585
               +  +    ++    +  + T RV  +      +    G+ G V    ++ T   + 
Sbjct: 258 GLKQLGEDPWVAIANRYPEGHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH 317

Query: 586 ----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
                           +ID++           +        +   ++        G++  
Sbjct: 318 PSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKAN----PWQLFAEMQNKGDRVTGKIKS 373

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLS 686
           + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I L 
Sbjct: 374 ITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVRDFKKGDEISAVVLQVDAERERISLG 432

Query: 687 MKVVDQNT 694
           +K ++++ 
Sbjct: 433 IKQMEEDP 440



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V  V   GA V      +G +  S+ S +RV   + V+  GD V  K    D + 
Sbjct: 453 IVKGKVTAVDAKGATVELIEGVEGYLRASEASRDRVEDATLVLAVGDEVEAKFTGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I LS++  D+   + 
Sbjct: 513 RVINLSVRAKDEAEEQE 529


>gi|293416809|ref|ZP_06659446.1| transcriptional accessory protein [Escherichia coli B185]
 gi|291431385|gb|EFF04370.1| transcriptional accessory protein [Escherichia coli B185]
          Length = 773

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|291284743|ref|YP_003501561.1| protein yhgF [Escherichia coli O55:H7 str. CB9615]
 gi|290764616|gb|ADD58577.1| protein yhgF [Escherichia coli O55:H7 str. CB9615]
 gi|320639689|gb|EFX09283.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. G5101]
 gi|320645187|gb|EFX14203.1| putative transcriptional accessory protein [Escherichia coli
           O157:H- str. 493-89]
 gi|320650498|gb|EFX18964.1| putative transcriptional accessory protein [Escherichia coli
           O157:H- str. H 2687]
 gi|320655690|gb|EFX23613.1| putative transcriptional accessory protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661474|gb|EFX28889.1| putative transcriptional accessory protein [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666497|gb|EFX33480.1| putative transcriptional accessory protein [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 773

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|88859273|ref|ZP_01133913.1| 30S ribosomal subunit protein S1 [Pseudoalteromonas tunicata D2]
 gi|88818290|gb|EAR28105.1| 30S ribosomal subunit protein S1 [Pseudoalteromonas tunicata D2]
          Length = 555

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A ++       I  ++    +     +  F P      +    +R+   + GK +  
Sbjct: 98  LEKACEEQVTVIGVINGKVKGGFTVEVDTIRAFLPGSL---VDVRPVRDTTHLEGKELEF 154

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E E ++E    + ++ E  ++ KG V  + D+GAF
Sbjct: 155 KVIKLDQKRN-----NVVVSRRAVIESENSQERDELLANLIEGQEV-KGIVKNLTDYGAF 208

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD D+ ++ L +K + ++  
Sbjct: 209 VDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSLGLKQLGEDPW 267

Query: 696 KPIV 699
             I 
Sbjct: 268 AAIA 271



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G++  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-TGRITNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
           + D+ R +I L +K    N  + 
Sbjct: 334 EIDEERRRISLGLKQCIANPWQE 356



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V +V   GA +      +G + ++ ++ ERV   +  V  GD V  K +  D + 
Sbjct: 453 IVKGKVTEVDAKGATIEISEGVEGYIRVADIAQERVEDATTAVSVGDEVEAKYVGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K + +   K ++
Sbjct: 513 RTLSLSVKALFEAEEKEVL 531



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++                    +    + 
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCIAN----PWQEFARLQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S        + V+E   GD +   +
Sbjct: 362 NKGDQVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNAPG--EEAVREYKKGDEITAIV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 420 LQVDPERERISLGVKQIESDP 440


>gi|261344290|ref|ZP_05971934.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
 gi|282567894|gb|EFB73429.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
          Length = 557

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  DEIDVALDAVEDGFGETILSREKAKRHEAWLMLEKAYEEAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +     +   I  G+V+ V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELTLGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D++  K  V
Sbjct: 497 VGDDVEAKYTGVDRKNRVINLSVRAKDESDEKDAV 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 130/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESESSAERDQL----LENLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 267 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +   +        +G++  + DFG F+ 
Sbjct: 327 VVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRVEGKIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   V     V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 383 LDGGIDGLVHLSDISWN-VTGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|91229576|ref|ZP_01262936.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
 gi|91187384|gb|EAS73741.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
          Length = 389

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           + D +R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355


>gi|323189004|gb|EFZ74288.1| protein yhgF [Escherichia coli RN587/1]
          Length = 773

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|332654410|ref|ZP_08420153.1| general stress protein 13 [Ruminococcaceae bacterium D16]
 gi|332516374|gb|EGJ45980.1| general stress protein 13 [Ruminococcaceae bacterium D16]
          Length = 155

 Score = 97.3 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 44/82 (53%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               V  I  G+V  +  FGAFV     R GLVHIS+++   V + SD +KEG  V VK+
Sbjct: 1   MEFGVGSILDGKVTGITKFGAFVALPEGRSGLVHISEIAYSYVNEVSDYLKEGQEVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
           +  D   +I LS+K V+    +
Sbjct: 61  IGIDQANRINLSIKKVNDPPQR 82


>gi|330964802|gb|EGH65062.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 563

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 68  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 127

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 128 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 180 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 237

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 272



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 161 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 220

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 221 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 280

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
                V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 281 RVTALVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 340

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 341 RRRISLGIKQCKSNPWED 358



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 441 DPFSEYVTVNDKGAIVRGIVKEVDAKGAIIILADDIEATLKASEISRDRVEDARNVLKEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    K  +
Sbjct: 501 EEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 533



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 318 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 364 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 422

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 423 SVDPERERISLGIKQLESDP 442


>gi|302061501|ref|ZP_07253042.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato K40]
          Length = 553

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 58  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 117

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 118 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 169

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 170 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 227

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 228 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 262



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 151 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 210

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 211 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 270

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 271 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 330

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 331 RRRISLGIKQCKSNPWED 348



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 431 DPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 490

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    K  +
Sbjct: 491 EEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 523



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 308 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 353

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 354 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 412

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 413 SVDPERERISLGIKQLESDP 432


>gi|227873636|ref|ZP_03991873.1| S1 domain RNA-binding protein [Oribacterium sinus F0268]
 gi|227840507|gb|EEJ50900.1| S1 domain RNA-binding protein [Oribacterium sinus F0268]
          Length = 753

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE +  + D+ E   + +G V  V+DFGAFV     +DGLVHIS LS + V    DVVK 
Sbjct: 669 REDVLELEDLKEG-MVLQGTVRNVIDFGAFVDIGVHQDGLVHISALSKKFVKHPLDVVKL 727

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+L  D  R KI LSMK V+
Sbjct: 728 GDIVKVKVLSVDVARKKISLSMKDVE 753


>gi|28868956|ref|NP_791575.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|66046871|ref|YP_236712.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B728a]
 gi|71737484|ref|YP_275804.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|213968716|ref|ZP_03396858.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
 gi|237799023|ref|ZP_04587484.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|257485842|ref|ZP_05639883.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289623736|ref|ZP_06456690.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648178|ref|ZP_06479521.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289677165|ref|ZP_06498055.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae FF5]
 gi|298488021|ref|ZP_07006058.1| SSU ribosomal protein S1p [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|301381331|ref|ZP_07229749.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato Max13]
 gi|302130032|ref|ZP_07256022.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302187670|ref|ZP_07264343.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae 642]
 gi|28852196|gb|AAO55270.1| ribosomal protein S1 [Pseudomonas syringae pv. tomato str. DC3000]
 gi|63257578|gb|AAY38674.1| Ribosomal protein S1 [Pseudomonas syringae pv. syringae B728a]
 gi|71558037|gb|AAZ37248.1| ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|213926649|gb|EEB60202.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
 gi|298157300|gb|EFH98383.1| SSU ribosomal protein S1p [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320323347|gb|EFW79435.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320327544|gb|EFW83556.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330866103|gb|EGH00812.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330877036|gb|EGH11185.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330889341|gb|EGH22002.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. mori str.
           301020]
 gi|330960540|gb|EGH60800.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330972340|gb|EGH72406.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330986661|gb|EGH84764.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012931|gb|EGH92987.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331016846|gb|EGH96902.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
 gi|331021877|gb|EGI01934.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 563

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 68  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 127

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 128 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 180 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 237

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 272



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 161 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 220

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 221 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 280

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 281 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 340

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 341 RRRISLGIKQCKSNPWED 358



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 441 DPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    K  +
Sbjct: 501 EEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 533



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 318 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 364 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 422

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 423 SVDPERERISLGIKQLESDP 442


>gi|332524026|ref|ZP_08400278.1| putative ribosomal protein S1 [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315290|gb|EGJ28275.1| putative ribosomal protein S1 [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 406

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356


>gi|296876572|ref|ZP_06900622.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
 gi|296432391|gb|EFH18188.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
          Length = 399

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357



 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A+      +     V  I  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAASAAARAEVFGKLNVGDIVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|291326411|ref|ZP_06124376.2| ribosomal protein S1 [Providencia rettgeri DSM 1131]
 gi|291314430|gb|EFE54883.1| ribosomal protein S1 [Providencia rettgeri DSM 1131]
          Length = 569

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 78  DEIDVALDAVEDGFGETILSREKAKRHEAWLMLEKAYEEAETVTGVINGKVKGGFTVELN 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 SSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 248 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 283



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +     +   I  G+V+ V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 449 AEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELTLGVEGYLRASEASRDRVEDATLVLN 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  V
Sbjct: 509 VGDDVEAKYTGVDRKNRVINLSVRAKDEADEKDAV 543



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 124 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDQKRN 176

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 177 NV-VVSRRAVIESESSAERDQL----LENLQEGMEVK--------GIVKNLTDYGAFVDL 223

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 224 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRERTRVSLGLKQLGEDP 278

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 279 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 338

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +   +        +G++  + DFG F+ 
Sbjct: 339 VVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRVEGKIKSITDFGIFIG 394

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 395 LDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 452



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 234 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 294 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKSNPWQ 367


>gi|215488688|ref|YP_002331119.1| predicted transcriptional accessory protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266760|emb|CAS11200.1| predicted transcriptional accessory protein [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|332996405|gb|EGK16032.1| protein yhgF [Shigella flexneri VA-6]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|306816255|ref|ZP_07450393.1| putative transcriptional accessory protein [Escherichia coli NC101]
 gi|331659696|ref|ZP_08360634.1| protein YhgF [Escherichia coli TA206]
 gi|305850651|gb|EFM51108.1| putative transcriptional accessory protein [Escherichia coli NC101]
 gi|315295933|gb|EFU55242.1| S1 RNA binding domain protein [Escherichia coli MS 16-3]
 gi|331052911|gb|EGI24944.1| protein YhgF [Escherichia coli TA206]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
          Length = 487

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  D++
Sbjct: 340 DEAMVKVIDIDLERRRISLSLKQADED 366



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|293393397|ref|ZP_06637709.1| YhgF like protein [Serratia odorifera DSM 4582]
 gi|291424134|gb|EFE97351.1| YhgF like protein [Serratia odorifera DSM 4582]
          Length = 807

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ 
Sbjct: 648 QPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHSVVKAGDIVKVKVMEV 707

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M+ +D+  G+
Sbjct: 708 DLQRKRIALTMR-LDEQPGE 726


>gi|326794751|ref|YP_004312571.1| ribosomal protein S1 [Marinomonas mediterranea MMB-1]
 gi|326545515|gb|ADZ90735.1| ribosomal protein S1 [Marinomonas mediterranea MMB-1]
          Length = 560

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++ +     I  ++    +    
Sbjct: 66  DEVKVALDAVEDGFGETKLSREKAKRAETWAVLEKAYEEGEIVTGIINGKVKGGFTVDIA 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   + G  +   + +   K N      V ++  ++ E  
Sbjct: 126 NIRAFLPGSL---VDVRPIRDTSHLEGVDLEFKLIKLDQKRN-----NVVVSRRAVMEAT 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    ++ + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S+++
Sbjct: 178 NSAERETLLSSLEEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEII 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 AVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  K+   +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +L
Sbjct: 275 PEGTKV-TARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQIGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           D D +R +I L +K    N  + 
Sbjct: 334 DIDEERRRISLGIKQCTPNPWEE 356



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G  +  +V      ++ID++                           
Sbjct: 316 IHPSKVVQI----GDEVEVMV------LDIDEERRRISLGIKQCTPN----PWEEFAGSF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G +  + DFG F+   G  DGLVH+S LS +      + V   K+GD +   +
Sbjct: 362 NKGDKISGAIKSITDFGVFIGLDGGIDGLVHLSDLSWDETG--EEAVRQYKKGDLLETVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K + ++ 
Sbjct: 420 LSIDAERERISLGVKQLAEDP 440



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +     +   I  G V +V    A V      +  + +S +S ER+    + + 
Sbjct: 437 AEDPFIAFVAENDKGAIVTGTVTEVEAKSAVVTLAEGVEASLKVSDISRERIEDARNELN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
            GD++   ++  D + + I +S+K  D +  K
Sbjct: 497 VGDSIEAAIVSVDRKARTISISVKAKDASEEK 528


>gi|324111719|gb|EGC05699.1| tex protein containing protein [Escherichia fergusonii B253]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|261492540|ref|ZP_05989093.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495207|ref|ZP_05991669.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309132|gb|EEY10373.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311699|gb|EEY12849.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 555

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 21/257 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +   V  I  GLV     F   S I   E      + +V   D     + +     G   
Sbjct: 24  VKGTVVAIQKGLVIVDTGFKSESAIDASEFTNAQGELEVQVGDE--VDVVLKAVEDGFGA 81

Query: 515 NIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQI 563
            ++            AL++A   +  ++  ++ KV     ++L      +    +    +
Sbjct: 82  TVVSRGDAKRNEAWIALEKAFEEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPV 141

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R+ + + GK     V +   K N      V ++  ++ E E+ ++    + ++ E +++ 
Sbjct: 142 RDSLNLEGKEYEFKVIKLDQKRN-----NVVVSRRAVIETESNQDRDAVLANLVEGSEV- 195

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD V VK+L FD D+ +
Sbjct: 196 KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTR 254

Query: 683 IKLSMKVVDQNTGKPIV 699
           + L +K + Q+    I 
Sbjct: 255 VSLGLKQLGQDPWAVIA 271



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKE 666
                      N    G++  + DFG F+   G  DGLVH+S +S   V+    V   K+
Sbjct: 353 PWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VSGEEAVRNYKK 411

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           GD V   +L  D  + +I L +K ++ + 
Sbjct: 412 GDEVEAVVLQVDAVKERISLGIKQLESDP 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +   I  G+VV+V   G  V   G  +  +  ++ + ERV   + V+  G
Sbjct: 439 DPFTNFVDGTKKGAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D++  K    D + + + LS++  ++
Sbjct: 499 DSIEAKYTGVDRKSRVVNLSVRAKNE 524



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+      +   +       ++    I +   VN    
Sbjct: 222 DMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPVNSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLEVDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWE 355


>gi|251779114|ref|ZP_04822034.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083429|gb|EES49319.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 725

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 2/135 (1%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+   V G+        + +   K +I  +                 +         +
Sbjct: 588 DIDKRAEVKGINKLSKDLDIGELTLK-DIIKELKKPGRDPRDEMPTPILKTGIIELKDLK 646

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D
Sbjct: 647 PGMVLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVD 706

Query: 679 -DRGKIKLSMKVVDQ 692
             R +I LSMK VD+
Sbjct: 707 QKRKRISLSMKDVDE 721


>gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
 gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
          Length = 493

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +R+      +  ++  G V  +++FG
Sbjct: 161 YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRANFLQQLQKGQVRTGTVSSIVNFG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 221 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279

Query: 694 TGK 696
             +
Sbjct: 280 PWQ 282



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +       + ++  G
Sbjct: 242 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQLFARTHALGQVVPG 296

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV   + ++VK++D D DR +I 
Sbjct: 297 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDMAEQVVSVNEELFVKVIDIDLDRRRIS 356

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 357 LSLKQANE 364



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +      DVV  GD V   +L   D 
Sbjct: 34  DLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDDVVAVGDEVEALVLPKEDK 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 94  EGRLILSKKRAQ 105


>gi|332750344|gb|EGJ80755.1| protein yhgF [Shigella flexneri 4343-70]
 gi|332751213|gb|EGJ81616.1| protein yhgF [Shigella flexneri 2747-71]
 gi|332996645|gb|EGK16270.1| protein yhgF [Shigella flexneri K-272]
 gi|332997185|gb|EGK16801.1| protein yhgF [Shigella flexneri K-218]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|327251042|gb|EGE62735.1| protein yhgF [Escherichia coli STEC_7v]
          Length = 780

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|325498949|gb|EGC96808.1| transcriptional accessory protein [Escherichia fergusonii ECD227]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|320175774|gb|EFW50860.1| putative transcriptional accessory protein [Shigella dysenteriae
           CDC 74-1112]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|312968283|ref|ZP_07782493.1| protein yhgF [Escherichia coli 2362-75]
 gi|312287108|gb|EFR15018.1| protein yhgF [Escherichia coli 2362-75]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|331665012|ref|ZP_08365913.1| protein YhgF [Escherichia coli TA143]
 gi|331057522|gb|EGI29508.1| protein YhgF [Escherichia coli TA143]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|301019573|ref|ZP_07183735.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
 gi|300399198|gb|EFJ82736.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|281602757|gb|ADA75741.1| putative Transcriptional accessory protein [Shigella flexneri
           2002017]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|258653204|ref|YP_003202360.1| 30S ribosomal protein S1 [Nakamurella multipartita DSM 44233]
 gi|258556429|gb|ACV79371.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233]
          Length = 485

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 32/288 (11%)

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
           S++TV    +A+ D G      +A I   +    D  I+   I   +     +D  +   
Sbjct: 2   SISTVAAPQVAINDIGS-AEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLD--IGYK 58

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK-VLSESRLQLGEFTPRVEI 555
             G+   +       +  + +V   +  +   L   ++  + +LS+ R Q       +E 
Sbjct: 59  TEGVIPSRELSIKHDVDPSEVVEIGEHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEK 118

Query: 556 MA------------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDD 590
           +             +    +   IG+ G +   +VE             Q  AK+   D 
Sbjct: 119 IKEEDGVVSGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRQLDAKIIELDK 178

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
               +  S    +E  +  +RS         ++ KG V  +++FGAFV   G  DGLVH+
Sbjct: 179 NRNNVVLSRRQWLEQTQSEVRSEFLNQLGKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHV 237

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 238 SELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWR 285



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + ++  G
Sbjct: 245 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWRHFARTHAIGQVVPG 299

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV   D ++V+++D D +R +I 
Sbjct: 300 KVTKLVPFGAFVRVYDGIEGLVHISELAGRHVEVPEQVVTVDDEIFVRVIDIDLERRRIS 359

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 360 LSLKQANE 367


>gi|218706998|ref|YP_002414517.1| transcriptional accessory protein [Escherichia coli UMN026]
 gi|293406985|ref|ZP_06650909.1| yhgF [Escherichia coli FVEC1412]
 gi|298382727|ref|ZP_06992322.1| yhgF [Escherichia coli FVEC1302]
 gi|300898905|ref|ZP_07117205.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
 gi|218434095|emb|CAR15012.1| transcriptional accessory protein [Escherichia coli UMN026]
 gi|291425796|gb|EFE98830.1| yhgF [Escherichia coli FVEC1412]
 gi|298276563|gb|EFI18081.1| yhgF [Escherichia coli FVEC1302]
 gi|300357457|gb|EFJ73327.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|218697090|ref|YP_002404757.1| transcriptional accessory protein [Escherichia coli 55989]
 gi|218353822|emb|CAV00175.1| transcriptional accessory protein [Escherichia coli 55989]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|170767157|ref|ZP_02901610.1| putative transcriptional accessory protein [Escherichia albertii
           TW07627]
 gi|170124595|gb|EDS93526.1| putative transcriptional accessory protein [Escherichia albertii
           TW07627]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|89110603|ref|AP_004383.1| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. W3110]
 gi|90111588|ref|NP_417866.4| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082924|ref|YP_001732244.1| transcriptional accessory protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238902498|ref|YP_002928294.1| putative transcriptional accessory protein [Escherichia coli
           BW2952]
 gi|253771764|ref|YP_003034595.1| RNA binding S1 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|6176584|sp|P46837|YHGF_ECOLI RecName: Full=Protein yhgF
 gi|85676634|dbj|BAE77884.1| predicted transcriptional accessory protein [Escherichia coli str.
           K12 substr. W3110]
 gi|87082262|gb|AAC76432.2| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890759|gb|ACB04466.1| predicted transcriptional accessory protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238863139|gb|ACR65137.1| predicted transcriptional accessory protein [Escherichia coli
           BW2952]
 gi|253322808|gb|ACT27410.1| RNA binding S1 domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447574|gb|ACX37996.1| RNA binding S1 domain protein [Escherichia coli DH1]
 gi|315137983|dbj|BAJ45142.1| putative transcriptional accessory protein [Escherichia coli DH1]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|193068760|ref|ZP_03049720.1| putative transcriptional accessory protein [Escherichia coli
           E110019]
 gi|192957836|gb|EDV88279.1| putative transcriptional accessory protein [Escherichia coli
           E110019]
          Length = 773

 Score = 96.9 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|323966220|gb|EGB61656.1| tex protein containing protein [Escherichia coli M863]
 gi|323974789|gb|EGB69901.1| tex protein containing protein [Escherichia coli TW10509]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|313901827|ref|ZP_07835249.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313467909|gb|EFR63401.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 558

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V  + DFGAF+   G  DGL+H+S++   R+    D++KEGDT+ VK+L  
Sbjct: 344 EEGQVRTGVVKGLTDFGAFIDL-GGVDGLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLKV 402

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +RG+I LS+K +  +    +
Sbjct: 403 DRERGRISLSLKELMPDPWSDV 424



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    +I+ S    +    +    +     V    KG VV+++ FGAFV      +GLVH
Sbjct: 403 DRERGRISLSLKELMP---DPWSDVERRYPVGATVKGTVVRLVPFGAFVRLEPGVEGLVH 459

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           ISQL+  RV    +VV EG  V V++L    +  +I LSM+
Sbjct: 460 ISQLADHRVESPDEVVHEGQEVEVRVLRVQPEERRISLSMR 500


>gi|293412824|ref|ZP_06655492.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468471|gb|EFF10964.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
          Length = 488

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVNVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EEVMVKVIDIDLERRRISLSLKQADED 366



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVK+      +      +G++   +LS +     ++VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHEIDPNEVVEVGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|222035109|emb|CAP77854.1| Protein yhgF [Escherichia coli LF82]
 gi|312947955|gb|ADR28782.1| transcriptional accessory protein [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|194431285|ref|ZP_03063578.1| putative transcriptional accessory protein [Shigella dysenteriae
           1012]
 gi|194420740|gb|EDX36816.1| putative transcriptional accessory protein [Shigella dysenteriae
           1012]
 gi|332085781|gb|EGI90945.1| protein yhgF [Shigella dysenteriae 155-74]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|110643640|ref|YP_671370.1| S1 RNA-binding domain-containing protein [Escherichia coli 536]
 gi|191171603|ref|ZP_03033151.1| putative transcriptional accessory protein [Escherichia coli F11]
 gi|300987292|ref|ZP_07178100.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
 gi|110345232|gb|ABG71469.1| protein YhgF (S1 RNA binding domain) [Escherichia coli 536]
 gi|190908230|gb|EDV67821.1| putative transcriptional accessory protein [Escherichia coli F11]
 gi|300306160|gb|EFJ60680.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
 gi|324009384|gb|EGB78603.1| S1 RNA binding domain protein [Escherichia coli MS 57-2]
 gi|324014587|gb|EGB83806.1| S1 RNA binding domain protein [Escherichia coli MS 60-1]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|254481764|ref|ZP_05095007.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
 gi|214037893|gb|EEB78557.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
          Length = 558

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 88/215 (40%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +   +  A +  +     I  ++    +    
Sbjct: 66  DEVQVALESVEDGFGETKLSREKAKRAEAWKELESAHEAEEVVIGIINGKVKGGFTVDIN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R    + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 TIRAFLPGSL---VDVRPVRETTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVMEAA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSEEREALLETLQEGMSV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + G  + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 EVGQEIDVKILKFDRERNRVSLGLKQLGEDPWVEI 270



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT           ++  + D+G F       +GLVH+S++    +    S +V  
Sbjct: 265 DPWVEITGRYPEGSRVNAKITNLTDYGCFAELEEGVEGLVHVSEMDWTNKNVHPSKIVNL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +LD D +R +I L +K   QN  
Sbjct: 325 GDELEVMVLDIDEERRRISLGIKQCQQNPW 354



 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 131/372 (35%), Gaps = 72/372 (19%)

Query: 359 DEQYVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           +E  +  ++G  +  F +  N    FLP +  +V  +     RE  H  L  + +   + 
Sbjct: 105 EEVVIGIINGKVKGGFTVDINTIRAFLPGSLVDVRPV-----RETTH--LEGKELEFKVI 157

Query: 415 QTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +  Q    + +VS   + E+  S     +    L  +  G+ +         G+VK+  D
Sbjct: 158 KLDQKRNNV-VVSRRAVMEAANSEEREAL----LETLQEGMSVK--------GIVKNLTD 204

Query: 473 FIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           +    D+ G +   H+  M +K     S I  +  +     I   I+        R R  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRIKHPSEIVEVGQE-----IDVKILKF-----DRERNR 254

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAK- 584
           +   + ++  +  +++    P    +      + +      +  G + +  + E      
Sbjct: 255 VSLGLKQLGEDPWVEITGRYPEGSRVNAKITNLTDYGCFAELEEGVEGLVHVSEMDWTNK 314

Query: 585 ------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
                             ++ID++           +    +    +     +      G 
Sbjct: 315 NVHPSKIVNLGDELEVMVLDIDEERRRISLGIKQCQ----QNPWDAFASKCQKGDKISGS 370

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGK 682
           +  + DFG F+   G  DGLVH+S +S        + V   K+GD +   +L  D +R +
Sbjct: 371 IKSITDFGIFIGLEGNIDGLVHLSDISWNETG--EEAVRNYKKGDEIETVILSIDPERER 428

Query: 683 IKLSMKVVDQNT 694
           I L +K ++ + 
Sbjct: 429 ISLGVKQLEDDP 440



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V++V      +      +G++  S +S +RV    +  K GD+V  K+   D + 
Sbjct: 453 IVTGEVIEVDAKEVIIKLADEVEGVLKASDISRDRVEDARNSFKVGDSVEAKITSVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K  D    K  V
Sbjct: 513 RGVALSIKAKDYEDEKEAV 531


>gi|66803084|ref|XP_635385.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996562|sp|Q54F05|DHX8_DICDI RecName: Full=ATP-dependent RNA helicase dhx8; AltName: Full=DEAH
           box protein 8
 gi|60463693|gb|EAL61875.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 1160

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   K    D    +            +   R I   P + KIY G+V  + D+G FV 
Sbjct: 161 EELKRKQQDMDREFEREQREKRDRDREQQNKRREIDKEPILYKIYDGKVSSINDYGCFVT 220

Query: 639 F---CGARDGLVHISQLSTERVA--KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                G RDGLVHISQ+ + R      SDVVK    V VK+L      KI LSMK VDQ+
Sbjct: 221 LEGIAGRRDGLVHISQILSGRTKLNHPSDVVKRNQQVKVKILSV-ASSKISLSMKDVDQS 279

Query: 694 TGKPI 698
           TG+ +
Sbjct: 280 TGRDL 284


>gi|116618391|ref|YP_818762.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097238|gb|ABJ62389.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 396

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+   D    +I+ S  A           + +      + +G V +V DFGAFV 
Sbjct: 244 ETVNVKILALDAEKGRISLSIKATQP---GPWDKVAEEAPAGTVLEGTVKRVKDFGAFVE 300

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVH+SQ+S +R+   S+V+K GD V V++LD      +I LSMK +++   + 
Sbjct: 301 IFPGIEGLVHVSQISHKRIENPSEVLKSGDKVQVQVLDVKPAEERISLSMKALEEKPERE 360



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      I S      +     +    +   V ++ +G+V ++ DFGAFV   G  D
Sbjct: 162 IEIDAAKARLILSRKAVAAQERAAQLAEAFEKLSVGEVVEGKVARLTDFGAFVDL-GGVD 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH+S++S +RV   +DV+ +G+TV VK+L  D ++G+I LS+K       
Sbjct: 221 GLVHVSEISHDRVKNPADVLTKGETVNVKILALDAEKGRISLSIKATQPGPW 272


>gi|320186723|gb|EFW61446.1| putative transcriptional accessory protein [Shigella flexneri CDC
           796-83]
 gi|332090502|gb|EGI95600.1| protein yhgF [Shigella boydii 3594-74]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|331685047|ref|ZP_08385633.1| protein YhgF [Escherichia coli H299]
 gi|331077418|gb|EGI48630.1| protein YhgF [Escherichia coli H299]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|284822061|gb|ADB98031.1| conserved hypothetical protein [Escherichia coli]
          Length = 316

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 160 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 219

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 220 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 270


>gi|262282821|ref|ZP_06060588.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
 gi|262261073|gb|EEY79772.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
          Length = 401

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            V VK+L+ +    ++ LS+K +++   
Sbjct: 328 EVTVKVLEVNPANERVSLSIKALEERPA 355



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S        A      +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAEAAAARAEVFGKLNVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|284923399|emb|CBG36493.1| putative transcription accessory protein [Escherichia coli 042]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|110807239|ref|YP_690759.1| hypothetical protein SFV_3412 [Shigella flexneri 5 str. 8401]
 gi|110616787|gb|ABF05454.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|74313910|ref|YP_312329.1| hypothetical protein SSON_3538 [Shigella sonnei Ss046]
 gi|73857387|gb|AAZ90094.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 740

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 584 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 643

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 644 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 694


>gi|26250008|ref|NP_756048.1| hypothetical protein c4184 [Escherichia coli CFT073]
 gi|227883541|ref|ZP_04001346.1| transcription accessory protein [Escherichia coli 83972]
 gi|300985365|ref|ZP_07177421.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
 gi|301050382|ref|ZP_07197270.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
 gi|26110437|gb|AAN82622.1|AE016768_40 Protein yhgF [Escherichia coli CFT073]
 gi|227839420|gb|EEJ49886.1| transcription accessory protein [Escherichia coli 83972]
 gi|300297908|gb|EFJ54293.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
 gi|300408106|gb|EFJ91644.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
 gi|307555493|gb|ADN48268.1| putative transcriptional accessory protein [Escherichia coli ABU
           83972]
 gi|315291752|gb|EFU51108.1| S1 RNA binding domain protein [Escherichia coli MS 153-1]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 238

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  +  R+DGR +  +R    ++  L    GS+    G+T  +  V  G  E  +   
Sbjct: 2   EYISPEGYRLDGRRTTEMRKCEMEINFLSTADGSARVRMGNT-IVEAVVFGPLEGRRR-- 58

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                +  + M+ Y+    AT +  R     R  I    L ++    ++         + 
Sbjct: 59  ---NREGAELMVSYSQATFATRKR-REQMHDRTMIETAELLKQMYEQIIITKLLPETMID 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  ++ + DGS + A +   +LAL+DAG+P+   VA    G +    D  ++ D++ DE+
Sbjct: 115 LRVQVMQDDGSVTAAVINACTLALIDAGIPMIDIVAAAEGGYI----DGKMVVDMNKDEE 170

Query: 485 HLGHM 489
           ++G +
Sbjct: 171 NVGTV 175



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           +DG+     G T+V A V      +        L V+Y + T+A  K      RRE    
Sbjct: 32  ADGSARVRMGNTIVEAVVFGPLEGRRRNREGAELMVSYSQATFATRK------RREQMHD 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
              I  + ++ +    +       ET + + V     + S     + A + AL+ +G+P 
Sbjct: 86  RTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDGSVTAAVINACTLALIDAGIPM 145

Query: 146 EGPVVGAQVDYINGQYVLNPRLDEDQ 171
              V  A+  YI+G+ V++   DE+ 
Sbjct: 146 IDIVAAAEGGYIDGKMVVDMNKDEEN 171


>gi|320197365|gb|EFW71980.1| putative transcriptional accessory protein [Escherichia coli
           WV_060327]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|313647297|gb|EFS11749.1| protein yhgF [Shigella flexneri 2a str. 2457T]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|300822796|ref|ZP_07102932.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
 gi|331670229|ref|ZP_08371068.1| protein YhgF [Escherichia coli TA271]
 gi|331679471|ref|ZP_08380141.1| protein YhgF [Escherichia coli H591]
 gi|300524562|gb|EFK45631.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
 gi|331062291|gb|EGI34211.1| protein YhgF [Escherichia coli TA271]
 gi|331072643|gb|EGI43968.1| protein YhgF [Escherichia coli H591]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|213410649|ref|XP_002176094.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Schizosaccharomyces japonicus yFS275]
 gi|212004141|gb|EEB09801.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Schizosaccharomyces japonicus yFS275]
          Length = 1082

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLST-ERVAKTSDVVKEGDTVW 671
            P++N +Y G V  + DFG FV   G R    GLVHIS +    RV   SDVV  G+ V+
Sbjct: 204 KPKINGVYTGVVSGIKDFGVFVTLDGIRQRTSGLVHISNIQQNRRVEHPSDVVAYGERVY 263

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           VK++  D+   K  LSMK VDQ TG+ +
Sbjct: 264 VKVIKIDEAMKKYSLSMKDVDQETGEDL 291


>gi|170018357|ref|YP_001723311.1| RNA-binding S1 domain-containing protein [Escherichia coli ATCC
           8739]
 gi|169753285|gb|ACA75984.1| RNA binding S1 domain protein [Escherichia coli ATCC 8739]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|78485542|ref|YP_391467.1| 30S ribosomal protein S1 [Thiomicrospira crunogena XCL-2]
 gi|78363828|gb|ABB41793.1| SSU ribosomal protein S1P [Thiomicrospira crunogena XCL-2]
          Length = 557

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 21/261 (8%)

Query: 451 AGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
            G  I   V GI     LV  G         S  ED  G ++  V         + ++  
Sbjct: 21  TGSLIIGTVVGIDKETVLVDAGMKSESAIPKSQFEDANGELEVAVGDE----VEVYLETL 76

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIPPDQIRNVI 567
             G  E  +     + K  R    + +   L +S    G  T +V+  + +  + +R  +
Sbjct: 77  EDGFGETRL----SREKAKRAKTWDRLETALEDSETVTGLVTGKVKGGLTVDVEGVRGFL 132

Query: 568 GMGGKVIRGIVE-------QTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEV 619
                 +R I +       +   K+   D     +  S  A IEA       ++    E 
Sbjct: 133 PGSLVDVRPIRDFGFLEGKEVELKLVKLDRKRNNVVVSRRAVIEAENSVEREALLANMEE 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + +G V  + D+GAF+   G  DGL+HI+ ++  RV   S+V++ GD + VK+L FD 
Sbjct: 193 GSVLQGIVKNLTDYGAFIDL-GGIDGLLHITDMAWRRVNHPSEVIQVGDEIEVKVLKFDR 251

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           ++ ++ L MK + ++    +V
Sbjct: 252 EKNRVSLGMKQLQEDPWSDMV 272



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 19/188 (10%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------KVIRGIV 578
            R  ++   + V  E+ L   E    ++ +          I +GG         +    V
Sbjct: 170 SRRAVIEAENSVEREALLANMEEGSVLQGIVKNLTDYGAFIDLGGIDGLLHITDMAWRRV 229

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIE--------AAREMIRSITDVPEVNKIYKGQVVKV 630
                 + + D+  VK+      +                  +   P  ++I  G+V  +
Sbjct: 230 NHPSEVIQVGDEIEVKVLKFDREKNRVSLGMKQLQEDPWSDMVARYPIGSEI-MGKVANI 288

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            D+GAF+      +GLVH S+L    R    S VV  G  V VK+LD D +R +I LS+K
Sbjct: 289 TDYGAFIEIEDGIEGLVHTSELDWTNRNIHPSKVVHLGQEVKVKILDVDQERRRISLSIK 348

Query: 689 VVDQNTGK 696
               N  +
Sbjct: 349 QCTVNPWE 356



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G+ ++  +      +++D +      S     +        + +   
Sbjct: 317 IHPSKVVHL----GQEVKVKI------LDVDQERRRISLSIKQCTVN----PWEAFSATH 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH++ +S  +       +  K+GD +   +L
Sbjct: 363 SKGDKISGSIKSITDFGIFIGLDGNIDGLVHLTDISWSQSGEEAVRE-FKKGDELETVIL 421

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++Q+ 
Sbjct: 422 SIDPERERISLGLKQLEQDP 441



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++           N I  G V  V + GA +      +G +  S+L  +     S V+K 
Sbjct: 439 QDPFGEFVAENGKNSIVTGTVKSVDEKGAVIDLAEEVEGYLRASELDED-TRDASSVLKV 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKV 689
           GD+V  K+++ D + + + LS+K 
Sbjct: 498 GDSVEAKIVNVDRKNRNVSLSIKA 521


>gi|188495896|ref|ZP_03003166.1| putative transcriptional accessory protein [Escherichia coli 53638]
 gi|188491095|gb|EDU66198.1| putative transcriptional accessory protein [Escherichia coli 53638]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|157162884|ref|YP_001460202.1| protein yhgF [Escherichia coli HS]
 gi|187730372|ref|YP_001882084.1| putative transcriptional accessory protein [Shigella boydii CDC
           3083-94]
 gi|191167913|ref|ZP_03029717.1| putative transcriptional accessory protein [Escherichia coli B7A]
 gi|209920863|ref|YP_002294947.1| hypothetical protein ECSE_3672 [Escherichia coli SE11]
 gi|218555956|ref|YP_002388869.1| transcriptional accessory protein [Escherichia coli IAI1]
 gi|256025865|ref|ZP_05439730.1| transcriptional accessory protein [Escherichia sp. 4_1_40B]
 gi|293453713|ref|ZP_06664132.1| transcriptional accessory protein [Escherichia coli B088]
 gi|300815397|ref|ZP_07095622.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
 gi|300907450|ref|ZP_07125096.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
 gi|300919306|ref|ZP_07135820.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
 gi|300926903|ref|ZP_07142669.1| S1 RNA binding domain protein [Escherichia coli MS 182-1]
 gi|300946850|ref|ZP_07161091.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
 gi|300956736|ref|ZP_07169006.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
 gi|301023059|ref|ZP_07186867.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
 gi|301302285|ref|ZP_07208417.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
 gi|301329714|ref|ZP_07222461.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
 gi|301645847|ref|ZP_07245761.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
 gi|307140093|ref|ZP_07499449.1| putative transcriptional accessory protein [Escherichia coli H736]
 gi|307311929|ref|ZP_07591567.1| Tex-like protein [Escherichia coli W]
 gi|309794677|ref|ZP_07689099.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
 gi|312972329|ref|ZP_07786503.1| protein yhgF [Escherichia coli 1827-70]
 gi|331644107|ref|ZP_08345236.1| protein YhgF [Escherichia coli H736]
 gi|157068564|gb|ABV07819.1| protein yhgF [Escherichia coli HS]
 gi|187427364|gb|ACD06638.1| putative transcriptional accessory protein [Shigella boydii CDC
           3083-94]
 gi|190902086|gb|EDV61831.1| putative transcriptional accessory protein [Escherichia coli B7A]
 gi|209914122|dbj|BAG79196.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218362724|emb|CAR00350.1| transcriptional accessory protein [Escherichia coli IAI1]
 gi|291321839|gb|EFE61270.1| transcriptional accessory protein [Escherichia coli B088]
 gi|299880981|gb|EFI89192.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
 gi|300316467|gb|EFJ66251.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
 gi|300400812|gb|EFJ84350.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
 gi|300413621|gb|EFJ96931.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
 gi|300417107|gb|EFK00418.1| S1 RNA binding domain protein [Escherichia coli MS 182-1]
 gi|300453505|gb|EFK17125.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
 gi|300532289|gb|EFK53351.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
 gi|300842448|gb|EFK70208.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
 gi|300844199|gb|EFK71959.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
 gi|301075836|gb|EFK90642.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
 gi|306908073|gb|EFN38573.1| Tex-like protein [Escherichia coli W]
 gi|308121727|gb|EFO58989.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
 gi|310334706|gb|EFQ00911.1| protein yhgF [Escherichia coli 1827-70]
 gi|315062686|gb|ADT77013.1| predicted transcriptional accessory protein [Escherichia coli W]
 gi|315255997|gb|EFU35965.1| S1 RNA binding domain protein [Escherichia coli MS 85-1]
 gi|315614675|gb|EFU95315.1| protein yhgF [Escherichia coli 3431]
 gi|320181897|gb|EFW56803.1| putative transcriptional accessory protein [Shigella boydii ATCC
           9905]
 gi|320199577|gb|EFW74167.1| putative transcriptional accessory protein [Escherichia coli
           EC4100B]
 gi|323174040|gb|EFZ59668.1| protein yhgF [Escherichia coli LT-68]
 gi|323182867|gb|EFZ68268.1| protein yhgF [Escherichia coli 1357]
 gi|323376726|gb|ADX48994.1| Tex-like protein [Escherichia coli KO11]
 gi|323939373|gb|EGB35584.1| tex protein containing protein [Escherichia coli E482]
 gi|324018697|gb|EGB87916.1| S1 RNA binding domain protein [Escherichia coli MS 117-3]
 gi|324116398|gb|EGC10317.1| tex protein containing protein [Escherichia coli E1167]
 gi|331036401|gb|EGI08627.1| protein YhgF [Escherichia coli H736]
 gi|332085555|gb|EGI90721.1| protein yhgF [Shigella boydii 5216-82]
 gi|332345359|gb|AEE58693.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|218550665|ref|YP_002384456.1| transcriptional accessory protein [Escherichia fergusonii ATCC
           35469]
 gi|218358206|emb|CAQ90853.1| transcriptional accessory protein [Escherichia fergusonii ATCC
           35469]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|168180380|ref|ZP_02615044.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum NCTC 2916]
 gi|226949048|ref|YP_002804139.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668877|gb|EDT80855.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum NCTC 2916]
 gi|226843882|gb|ACO86548.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A2 str. Kyoto]
          Length = 638

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 14/220 (6%)

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDE     +  K    + G   + +       +   +  A +  +  ++ + + +   L 
Sbjct: 350 GDEIEAKIVRIK---NEDGYVVLSLKELHREKALKNLKEAFENKQTIKVIVKDAVDAGLI 406

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
                +  F P   I     D +    G+  +V   I+E       I D    KI  S  
Sbjct: 407 CIYNGVRVFIPASHIELSHVDDLEAYKGLELEV--NIIE------FIKDRYRTKIVGSRR 458

Query: 601 AEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++  R      T    E + + +G+V +  DFGAF+      DGL+H+S++S  RV K
Sbjct: 459 NILKTIRNKHIEETWNSLEKDTVVEGEVKRFTDFGAFIEI-NGVDGLLHVSEISWGRVEK 517

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             D +K GD + V +LD D +  K+ LS+K + ++  K +
Sbjct: 518 PEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 557



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G VE+    + I D   V I        + A        +  +S+     +  I  G+V
Sbjct: 512 WGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSVEIKYPIGNIVLGKV 571

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I LS
Sbjct: 572 VRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRIALS 631

Query: 687 MKVVDQ 692
           +K V++
Sbjct: 632 IKDVEE 637



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       S            +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAINKMNNND-------SIIEVSKNEMLNYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++ +  +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLSYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKN 362

Query: 679 DRGKIKLSMKVV 690
           + G + LS+K +
Sbjct: 363 EDGYVVLSLKEL 374


>gi|322832232|ref|YP_004212259.1| ribosomal protein S1 [Rahnella sp. Y9602]
 gi|321167433|gb|ADW73132.1| ribosomal protein S1 [Rahnella sp. Y9602]
          Length = 569

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A +++      I  ++    +    
Sbjct: 78  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEESATVTGVINGKVKGGFTVELN 137

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 138 GIRAFLPGSL---VDVRPVRDTLHLEGKDLEFKVIKLDQKRN-----NVVVSRRAVIESE 189

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 190 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 247

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 248 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 283



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V   G  +G +  S+ S +R+   + V+ 
Sbjct: 449 AEDPFNNYLSVNKKGTIVTGKVTAVDAKGATVELAGGVEGYLRASEASRDRIEDATLVLS 508

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K  +
Sbjct: 509 VGDEVEAKFTGVDRKNRVVSLSVRAKDEADEKDAI 543



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 209 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 263

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 264 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 323

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 324 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNN----PWQQFAETHNKNDRV 379

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 380 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 438

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 439 ERISLGVKQLAEDP 452



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 234 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D+ R +
Sbjct: 294 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 354 ISLGLKQCKNNPWQ 367


>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
 gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
          Length = 495

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 30/294 (10%)

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             +D ++  A V    +A+ D G      +A I   +    D  I+   I   +     +
Sbjct: 1   MSTDTTTVPAAVAPKQVAINDIGTE-EDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLL 59

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           D     T+  I + ++ +K       ++ +  +           E   +LS+ R Q    
Sbjct: 60  DIGY-KTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKEDKEGRLILSKKRAQYERA 118

Query: 550 TPRVEIMA------------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAK 584
              +E +             +    +   IG+ G +   +VE             +  AK
Sbjct: 119 WGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAK 178

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           +   D     +  S  A +E  +  +RS   +  +  ++ KG V  +++FGAFV   G  
Sbjct: 179 IIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL-GGV 237

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++  +
Sbjct: 238 DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWR 291



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 288 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVG 347

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 348 DDVMVKVIDIDLDRRRISLSLKQANE 373


>gi|62857343|ref|NP_001017183.1| zinc finger, CCHC domain containing 17 [Xenopus (Silurana)
           tropicalis]
 gi|41353967|gb|AAS01425.1| putative S1 RNA binding domain protein [Xenopus (Silurana)
           tropicalis]
 gi|89272111|emb|CAJ81714.1| novel S1 RNA binding domain and zinc knuckle containing protein
           (ortholog of human putative S1 RNA binding domain
           protein PS1D) [Xenopus (Silurana) tropicalis]
          Length = 234

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 4/90 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVW 671
           + ++PE+  I+KG+V  V D+GAF+   G R  GLVH S +S+  V + S+VV  G+ VW
Sbjct: 1   MENLPELYDIFKGEVASVTDYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVW 60

Query: 672 VKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           VK++     D + K+ LSMKVV+Q  GK +
Sbjct: 61  VKVIGRETKDGKEKVSLSMKVVNQGDGKDL 90


>gi|283835802|ref|ZP_06355543.1| hypothetical protein CIT292_10196 [Citrobacter youngae ATCC 29220]
 gi|291067967|gb|EFE06076.1| protein YhgF [Citrobacter youngae ATCC 29220]
          Length = 777

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLP 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|222055457|ref|YP_002537819.1| ribosomal protein S1 [Geobacter sp. FRC-32]
 gi|221564746|gb|ACM20718.1| ribosomal protein S1 [Geobacter sp. FRC-32]
          Length = 586

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           I  GG + R I E    ++   +     I  S  A +E  RE  RS T        + +G
Sbjct: 165 IRPGGNLDRFIGETCNFRILKMNRKRGNIVLSRRALLEEEREKARSTTLATLAEGDVLEG 224

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+H++ +S  R+   S+ VK GD + VK+L +D ++GKI 
Sbjct: 225 VVKNIADYGAFVDL-GGVDGLLHVTDMSWGRLNHPSEAVKVGDALKVKVLKYDREKGKIS 283

Query: 685 LSMKVVDQNTG 695
           L +K    +  
Sbjct: 284 LGLKQTMPDPW 294



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++    ++    +G+VV + ++GAF+      +GLVHIS++S  +RV   S+++  
Sbjct: 292 DPWLNVESKYQIGDRVQGKVVSLTEYGAFIALGEGVEGLVHISEMSWTKRVRHPSELLTV 351

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V   +L  D    +I L +K  + N  
Sbjct: 352 GQEVEAVVLGVDVSSRRISLGLKQTEVNPW 381



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I          KG+V  + DFG F+      +GLVHIS+LS E++A T D    G
Sbjct: 466 DPWSEIPSKYRSGTRVKGKVTSITDFGIFLEIEEGIEGLVHISELSQEKLASTKDFAAVG 525

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691
           D +   +L  DD   KI LS+K + 
Sbjct: 526 DELEAVVLGVDDVEKKIALSIKALQ 550



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P   KI +GQ+  + DFG F+      DGLVH+S +S  +R+    ++  +G T+   +L
Sbjct: 389 PVGTKI-EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTKRIKHPGEIFGKGQTIQAVVL 447

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
           + D +  ++ L +K +  +    I
Sbjct: 448 NIDSENERLSLGIKQLTPDPWSEI 471


>gi|15839029|ref|NP_299717.1| 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
 gi|9107629|gb|AAF85237.1|AE004052_12 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
          Length = 569

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
              G T +  +     +  + +  AL++ +     I  ++    +     +  F P   +
Sbjct: 89  NGFGETILSREKAKRSMVWDELEEALEKNETISGRINGKVKGGFTVDIKDVRAFLPASLV 148

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
              P      + G          E     + +D      + S          E    + D
Sbjct: 149 DVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLLD 199

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + D+GAFV   G  DGL+HI+ ++ +RV    +VV  GD V V++L
Sbjct: 200 KLQEGAVLTGTVKNMTDYGAFVDL-GGVDGLLHITDMAWKRVRHPCEVVNIGDEVEVRVL 258

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
            FD +R ++ L +K + ++    I
Sbjct: 259 KFDRERNRVSLGLKQLGEDPWDNI 282



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V      VNI D+  V++          +        +   +I+     N    
Sbjct: 234 DMAWKRVRHPCEVVNIGDEVEVRVLKFDRERNRVSLGLKQLGEDPWDNISRRYPANCRVF 293

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  V D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D +R +
Sbjct: 294 GKVSNVTDYGAFVEIEAGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMILDVDEERRR 353

Query: 683 IKLSMKVVDQNTGK 696
           I L MK V  N  +
Sbjct: 354 ISLGMKQVAANPWE 367



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P ++  V    G  +  ++      +++D++               A     +     
Sbjct: 328 VNPSKVVQV----GDEVEVMI------LDVDEERRRISLGMKQV----AANPWETFALTH 373

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           +      GQV  + DFG F+   G  DGL+H+S +S        D+V   K+GDT+   +
Sbjct: 374 KKGDKVSGQVKSITDFGIFIGLDGGIDGLLHLSDISWNTTG--EDIVRNFKKGDTLETVV 431

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++Q+ 
Sbjct: 432 LAVDPERERISLGVKQLEQDP 452



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+  G V +V   GA +      +G V    ++ ERV   +  +K GD+V
Sbjct: 455 QYMATHPKGSKVI-GTVKEVDAKGALIELDEGIEGYVSARDIANERVDDATQYLKVGDSV 513

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             K +  D +G+ ++LS+K  D    + ++
Sbjct: 514 EAKFIGMDRKGRTLQLSIKAKDDAEMREVL 543


>gi|91212882|ref|YP_542868.1| hypothetical protein UTI89_C3908 [Escherichia coli UTI89]
 gi|117625674|ref|YP_858997.1| putative transcriptional accessory protein [Escherichia coli APEC
           O1]
 gi|218560465|ref|YP_002393378.1| transcriptional accessory protein [Escherichia coli S88]
 gi|237703137|ref|ZP_04533618.1| yhgF [Escherichia sp. 3_2_53FAA]
 gi|91074456|gb|ABE09337.1| hypothetical protein YhgF [Escherichia coli UTI89]
 gi|115514798|gb|ABJ02873.1| putative transcriptional accessory protein [Escherichia coli APEC
           O1]
 gi|218367234|emb|CAR05008.1| transcriptional accessory protein [Escherichia coli S88]
 gi|226902401|gb|EEH88660.1| yhgF [Escherichia sp. 3_2_53FAA]
 gi|294493847|gb|ADE92603.1| protein yhgF [Escherichia coli IHE3034]
 gi|307628468|gb|ADN72772.1| putative transcriptional accessory protein [Escherichia coli UM146]
 gi|315286094|gb|EFU45532.1| S1 RNA binding domain protein [Escherichia coli MS 110-3]
 gi|323950064|gb|EGB45947.1| tex protein containing protein [Escherichia coli H252]
 gi|323954656|gb|EGB50438.1| tex protein containing protein [Escherichia coli H263]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|157157022|ref|YP_001464864.1| protein yhgF [Escherichia coli E24377A]
 gi|193061670|ref|ZP_03042767.1| putative transcriptional accessory protein [Escherichia coli E22]
 gi|194427009|ref|ZP_03059561.1| putative transcriptional accessory protein [Escherichia coli B171]
 gi|254038574|ref|ZP_04872630.1| yhgF [Escherichia sp. 1_1_43]
 gi|256020751|ref|ZP_05434616.1| transcriptional accessory protein [Shigella sp. D9]
 gi|260846191|ref|YP_003223969.1| putative transcriptional accessory protein [Escherichia coli
           O103:H2 str. 12009]
 gi|332281954|ref|ZP_08394367.1| predicted transcriptional accessory protein [Shigella sp. D9]
 gi|157079052|gb|ABV18760.1| protein yhgF [Escherichia coli E24377A]
 gi|192932460|gb|EDV85057.1| putative transcriptional accessory protein [Escherichia coli E22]
 gi|194414970|gb|EDX31240.1| putative transcriptional accessory protein [Escherichia coli B171]
 gi|226839080|gb|EEH71103.1| yhgF [Escherichia sp. 1_1_43]
 gi|257761338|dbj|BAI32835.1| predicted transcriptional accessory protein [Escherichia coli
           O103:H2 str. 12009]
 gi|323162792|gb|EFZ48629.1| protein yhgF [Escherichia coli E128010]
 gi|323934603|gb|EGB31003.1| tex protein containing protein [Escherichia coli E1520]
 gi|323944371|gb|EGB40446.1| tex protein containing protein [Escherichia coli H120]
 gi|332104306|gb|EGJ07652.1| predicted transcriptional accessory protein [Shigella sp. D9]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|297529605|ref|YP_003670880.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
 gi|297252857|gb|ADI26303.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
          Length = 387

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P  + +     GK +   V +        +   V ++  ++ E E AR+    ++ + 
Sbjct: 137 VEPHYVEDFSDYKGKTLSVKVVELDR-----EKNRVILSHRAVVEEEQARQQKELLSRL- 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V ++ DFG FV   G  DGLVHISQLS  RVA  S+VVKEGD V VK+L  
Sbjct: 191 EPGQVLDGVVRRIADFGVFVDVGGF-DGLVHISQLSHTRVAHPSEVVKEGDVVKVKVLAV 249

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D + G++ LS+K       +
Sbjct: 250 DPENGRLSLSIKEALPGPWE 269



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +++  +   +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD
Sbjct: 267 PWEGLSEKVKPGDVVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326

Query: 669 TVWVKLLDFDD-RGKIKLSMK 688
            V  K+LD ++   ++ LS++
Sbjct: 327 VVKAKVLDVNEADHRLSLSIR 347



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           E +    +V EV  I +G+VVK+ D    V    ++  G++ IS+LS   + K SD V  
Sbjct: 3   EEMNVQVNVYEVGDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAV 62

Query: 667 GDTVWVKLLDFD-----DRGKIKLSMKVVD-QNTGKPI 698
           GD V  K+   +     + G + LS + VD +   + +
Sbjct: 63  GDEVTAKVKKVEEGKDGEEGLLILSKRAVDAERAWEDL 100


>gi|153937572|ref|YP_001387604.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum A str. Hall]
 gi|152933486|gb|ABS38985.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A str. Hall]
          Length = 638

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 14/220 (6%)

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDE     +  K    + G   + +           +  A +  +  ++ + + +   L 
Sbjct: 350 GDEIEAKIVRIK---NEDGYVVLSLKELHREKVLKNLKEAFENKQTIKVIVKDAVDAGLI 406

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
                +  F P   I     D +    G+  +V   I+E       I D    KI  S  
Sbjct: 407 CIYNGVRVFIPASHIELSHVDDLEAYKGLELEV--NIIE------FIKDRYRTKIVGSRR 458

Query: 601 AEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++  R      T    E + + +G+V +  DFGAF+      DGL+H+S++S  RV K
Sbjct: 459 NILKTIRNKHIEETWNSLEKDTVVEGEVKRFTDFGAFIEI-NGVDGLLHVSEISWGRVEK 517

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             D +K GD + V +LD D +  K+ LS+K + Q+  K +
Sbjct: 518 PEDALKIGDKIKVYILDIDKENKKLALSIKKLIQDPWKSV 557



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G VE+    + I D   V I        + A       ++  +S+     +  I  G+V
Sbjct: 512 WGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIQDPWKSVEIKYPIGNIVLGKV 571

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I LS
Sbjct: 572 VRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRIALS 631

Query: 687 MKVVDQ 692
           +K V++
Sbjct: 632 IKDVEE 637



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       S            +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAINKMNNND-------SIIEVSKNEMLNYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++ +  +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLSYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKN 362

Query: 679 DRGKIKLSMKVV 690
           + G + LS+K +
Sbjct: 363 EDGYVVLSLKEL 374


>gi|255320506|ref|ZP_05361687.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
 gi|262378398|ref|ZP_06071555.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
 gi|255302478|gb|EET81714.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
 gi|262299683|gb|EEY87595.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
          Length = 557

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 14/233 (6%)

Query: 471 DDFIILSDISGDEDHLGH-MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRG 527
           D    L+D    E  +G  +D  V   D+G+  T +  +      +   +    +  +  
Sbjct: 49  DRAEFLNDQRELEVQVGDTVDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIV 108

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
              I  ++    +     +  F P   +   P   IR+   + GK +   V +  AK N 
Sbjct: 109 TGVISGKVKGGFTVDIGPVRAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN- 164

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
             +  V   +   AE  A RE + +     E  +   G +  + D+GAFV   G  DGL+
Sbjct: 165 --NVVVSRRAVMEAESSADREALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLL 218

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           HI+ ++ +R+   S+VV+ G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 219 HITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQLGEDPWMAIM 271



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I +      I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWMAIMNRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  + +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWMAIMNRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        + 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNHDK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440


>gi|170683595|ref|YP_001745655.1| putative transcriptional accessory protein [Escherichia coli
           SMS-3-5]
 gi|170521313|gb|ACB19491.1| putative transcriptional accessory protein [Escherichia coli
           SMS-3-5]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|170724523|ref|YP_001758549.1| RNA-binding S1 domain-containing protein [Shewanella woodyi ATCC
           51908]
 gi|169809870|gb|ACA84454.1| RNA binding S1 domain protein [Shewanella woodyi ATCC 51908]
          Length = 802

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             I ++ G     +I  +              AA +         +   I +G V  V +
Sbjct: 628 DYITDKFGLPTVTDILAELDKPGRDPRGEFKTAAFKEGVEKVSDLKPEMILEGVVTNVTN 687

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS L+ + V+    +VK GD V VK+++ D +R +I LSM++ +
Sbjct: 688 FGAFVDVGVHQDGLVHISSLTDKFVSDPHTIVKAGDVVKVKVMEVDAERKRIALSMRLDE 747

Query: 692 QNTGK 696
           + + K
Sbjct: 748 KPSEK 752


>gi|309703818|emb|CBJ03159.1| putative transcription accessory protein [Escherichia coli ETEC
           H10407]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|331649205|ref|ZP_08350291.1| protein YhgF [Escherichia coli M605]
 gi|330909440|gb|EGH37954.1| transcription accessory protein (S1 RNA-binding domain)
           [Escherichia coli AA86]
 gi|331041703|gb|EGI13847.1| protein YhgF [Escherichia coli M605]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|119477610|ref|ZP_01617760.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
 gi|119449113|gb|EAW30353.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
          Length = 559

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +  ++  A    +     I  ++    +    
Sbjct: 66  DEVQVALEAVEDGWGATKLSREKAKRAEAWKVLEAAYAAEESVVGIINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R    + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 SIRAFLPGSL---VDVRPVRETTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVMETA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAERDELLATLQEGQSV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVSI 270



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    ++     VN+ D+  VK+          +        +   SIT         K
Sbjct: 222 DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVSITGRYPEGARVK 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
             +  + D+G F       +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 ATITNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMILDIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K   +N  
Sbjct: 342 ISLGIKQCMENPW 354



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     + N I  G V +V    A +      +G +  S++S ++V    + +KEG
Sbjct: 439 DPFNNYATANDKNSIVMGTVKEVDAKAAVITLAEDIEGTLKASEISRDKVEDARNALKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V VK++  D + + I LS+K  D    K  V
Sbjct: 499 DEVEVKIISIDRKNRTIALSIKAKDMADEKEAV 531



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  ++      ++ID++                     +     
Sbjct: 316 IHPSKVVNL----GDEVEVMI------LDIDEERRRISLGIKQCMEN----PWDAFGRQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G +  + DFG F+   GA DGLVH+S +S        D V   K+GD +   +
Sbjct: 362 NKGDKISGGIKSITDFGIFIGLDGAIDGLVHLSDISWNETG--EDAVRKYKKGDEIETVI 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 420 LSVDPERERISLGIKQLEDDP 440


>gi|28199337|ref|NP_779651.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
 gi|71276211|ref|ZP_00652490.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
 gi|71898750|ref|ZP_00680919.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|71900470|ref|ZP_00682601.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|170730703|ref|YP_001776136.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
 gi|182682062|ref|YP_001830222.1| 30S ribosomal protein S1 [Xylella fastidiosa M23]
 gi|28057443|gb|AAO29300.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
 gi|71162972|gb|EAO12695.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
 gi|71729776|gb|EAO31876.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|71731515|gb|EAO33577.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
 gi|167965496|gb|ACA12506.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
 gi|182632172|gb|ACB92948.1| ribosomal protein S1 [Xylella fastidiosa M23]
 gi|307578330|gb|ADN62299.1| 30S ribosomal protein S1 [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 558

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
              G T +  +     +  + +  AL++ +     I  ++    +     +  F P   +
Sbjct: 78  NGFGETILSREKAKRSMVWDELEEALEKNETISGRINGKVKGGFTVDIKDVRAFLPASLV 137

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
              P      + G          E     + +D      + S          E    + D
Sbjct: 138 DVRPVRDPAYLEGK---------ELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLLD 188

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + D+GAFV   G  DGL+HI+ ++ +RV    +VV  GD V V++L
Sbjct: 189 KLQEGAVLTGTVKNMTDYGAFVDL-GGVDGLLHITDMAWKRVRHPCEVVNIGDEVEVRVL 247

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
            FD +R ++ L +K + ++    I
Sbjct: 248 KFDRERNRVSLGLKQLGEDPWDNI 271



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V      VNI D+  V++          +        +   +I+     N    
Sbjct: 223 DMAWKRVRHPCEVVNIGDEVEVRVLKFDRERNRVSLGLKQLGEDPWDNISRRYPANCRVF 282

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  V D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D +R +
Sbjct: 283 GKVSNVTDYGAFVEIEAGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMILDVDEERRR 342

Query: 683 IKLSMKVVDQNTGK 696
           I L MK V  N  +
Sbjct: 343 ISLGMKQVAANPWE 356



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P ++  V    G  +  ++      +++D++               A     +     
Sbjct: 317 VNPSKVVQV----GDEVEVMI------LDVDEERRRISLGMKQV----AANPWETFALTH 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           +      GQV  + DFG F+   G  DGL+H+S +S        D+V   K+GDT+   +
Sbjct: 363 KKGDKVSGQVKSITDFGIFIGLDGGIDGLLHLSDISWNTTG--EDIVRNFKKGDTLETVV 420

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++Q+ 
Sbjct: 421 LAVDPERERISLGVKQLEQDP 441



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+  G V +V   GA +      +G V    ++ ERV   +  +K GD+V
Sbjct: 444 QYMATHPKGSKVI-GTVKEVDAKGALIELDEGIEGYVSARDIANERVDDATQYLKVGDSV 502

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             K +  D +G+ ++LS+K  D    + ++
Sbjct: 503 EAKFIGMDRKGRTLQLSIKAKDDAEMREVL 532


>gi|322389474|ref|ZP_08063026.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
 gi|321143852|gb|EFX39278.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
          Length = 399

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S        +      +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAESAAARAEVFGKLNVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|307130806|ref|YP_003882822.1| 30S ribosomal subunit protein S1 [Dickeya dadantii 3937]
 gi|313104175|sp|P37985|RS1_DICD3 RecName: Full=30S ribosomal protein S1
 gi|306528335|gb|ADM98265.1| 30S ribosomal subunit protein S1 [Dickeya dadantii 3937]
          Length = 557

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A +++      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEESATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATLVMS 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD +  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDEIEAKYTGVDRKNRVVSLSIRAKDEADEKDAI 531



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1]
 gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1]
          Length = 481

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +      I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 22/208 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  ++   AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VK++D D +R +I LS+K  +++  + 
Sbjct: 345 MVKVIDIDLERRRISLSLKQANEDYSEE 372



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|157148991|ref|YP_001456310.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895]
 gi|157086196|gb|ABV15874.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895]
          Length = 776

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|319950983|ref|ZP_08024854.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
 gi|319435365|gb|EFV90614.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
          Length = 490

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 166 QELEAKIIELDKNRNNVVLSRRAWLEQTQSAVRSEFLHRLQKGQVRKGVVSSIVNFGAFV 225

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 226 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWR 284



 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + +I  G
Sbjct: 244 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRHFARTHAIGQIVPG 298

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD   VK++D D DR +I 
Sbjct: 299 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRIS 358

Query: 685 LSMKVVDQN 693
           LS+K  D++
Sbjct: 359 LSLKQADED 367



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D     I S   A+ E A   I     + E ++  KG V++V+  G  +       G +
Sbjct: 93  EDKDGRLILSKKRAQYERAWGTIEE---LKEKDEAVKGTVIEVVKGGLILDI--GLRGFL 147

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             S +   RV      V  G  +  K+++ D +R  + LS +   + T
Sbjct: 148 PASLVEMRRVRDLLPYV--GQELEAKIIELDKNRNNVVLSRRAWLEQT 193


>gi|300937295|ref|ZP_07152137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
 gi|300457644|gb|EFK21137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|33875741|gb|AAH00685.1| ZCCHC17 protein [Homo sapiens]
          Length = 234

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|121997364|ref|YP_001002151.1| 30S ribosomal protein S1 [Halorhodospira halophila SL1]
 gi|121588769|gb|ABM61349.1| SSU ribosomal protein S1P [Halorhodospira halophila SL1]
          Length = 560

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + ++     I  ++    +    
Sbjct: 66  DEVEVALDTVEDGFGETRLSRERAKRAYAWRALEQAYENSETVSGQISGKVKGGFTVDLG 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P      + G         +E    K++   +  V    + + E  
Sbjct: 126 HIRAFLPGSLVDIRPVRDTTYLEGKD-------LEFKVIKLDARRNNVVVSRRAVVEEEY 178

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +A     ++ +  +  +  KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+VV
Sbjct: 179 SA--EREALLEKLQEGETLKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRVKNPSEVV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           + G  + VK+L FD +R ++ L +K +  +  + I 
Sbjct: 236 EVGQEIEVKVLKFDRERNRVSLGLKQLGADPWEAIA 271



 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + ++G FV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWEAIAQRYPEGARVPGKVTNITEYGCFVEIEEGVEGLVHVSEMDWTNKNVNPAKLVAV 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +LD D +R +I L MK    N    
Sbjct: 325 GDDVEVMILDIDEERRRISLGMKQCQPNPWDE 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +                      GQ+  + DFG FV   G  D
Sbjct: 333 LDIDEERRRISLGMKQCQPN----PWDEFAAKYAKGDRVVGQIKSITDFGIFVGLEGGID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   ++G+ V   +L  D +R +I L +K ++Q+ 
Sbjct: 389 GLVHLSDLSWDEAG--EEAVRNYRKGEEVETVVLSIDPERERISLGIKQLEQDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
               +V+ V   GA +   G  +G +  S L+ ERV     V++EG  +  K +  D R 
Sbjct: 453 TVNAKVLSVEAKGATLDVGGGVEGYIRASDLAKERVEDARSVLEEGQDLEAKFVGVDRRN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + + LS++  +    +
Sbjct: 513 RTVNLSLRAQEAEEEQ 528


>gi|218691684|ref|YP_002399896.1| transcriptional accessory protein [Escherichia coli ED1a]
 gi|218429248|emb|CAR10058.1| transcriptional accessory protein [Escherichia coli ED1a]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|156936431|ref|YP_001440347.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534685|gb|ABU79511.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894]
          Length = 775

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFAEGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSDKFVEDPHTVVKAGDIVKVKVLEVDLPRKRIALTMR-LDEQPGE 727


>gi|323456777|gb|EGB12643.1| hypothetical protein AURANDRAFT_18668 [Aureococcus anophagefferens]
          Length = 269

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +++G V ++  FG FV   G  DGL H+SQ+   RV    DVV  G+ V VK+++  D G
Sbjct: 40  VHRGTVARIQPFGCFVRIEGFGDGLCHVSQMCAYRVEDPKDVVDVGEAVRVKVVEHKDAG 99

Query: 682 KIKLSMKVVDQNTGKPI 698
           K  LSMK VDQ TG+ +
Sbjct: 100 KYSLSMKAVDQATGEDL 116


>gi|37525567|ref|NP_928911.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784995|emb|CAE13915.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 557

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEIDVALDAVEDGFGETVLSREKAKRHEAWLMLEKAYEDAETVTGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIAVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 497 VGDAVEAKYTGVDRKNRVINLSVRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +        +   +    N   +G++  + DFG F+   G  D
Sbjct: 333 LDIDEERRRISLGLKQCKAN----PWQLFAETHNKNDRVEGKIKSITDFGIFIGLDGGID 388

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 389 GLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGIKQLAEDP 440



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 265 DPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L +K    N  +
Sbjct: 325 GDVVEVMVLDIDEERRRISLGLKQCKANPWQ 355


>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
          Length = 278

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 11/230 (4%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R+   +    +R    S    G+T+ I  V  G  E      S   ++R    +   F
Sbjct: 54  PLRNPLTRRPPHRRP---SYVEHGNTKVICSVN-GPIEP--RAASARNSERATVTVDVCF 107

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
              +  +  + G   +R +       R     L  T      + I   I   DGS     
Sbjct: 108 AAFSGTDRKKRGKSDKRVLEMQSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATC 167

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-FIILSDI-SGDEDHLGHMDFKVAGTDS 498
           V  ++LAL+DAGVP+S  V    +    + D+    L D+ S +E  L  +     G   
Sbjct: 168 VNAATLALVDAGVPMSDYVTACTVASYTNPDESGEPLLDMSSAEEMDLPGITLATVGRSD 227

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
            I+ +Q++ K   +    +   L     G   I   +  V+ E   ++  
Sbjct: 228 KISLLQLETK---VRLERLEGMLAVGIDGCGKIRQLLDGVIREHGNKMAR 274



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 32  LATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN 87
              +G T V+ +V      +       +   +TV+            G   ++  +  + 
Sbjct: 70  YVEHGNTKVICSVNGPIEPRAASARNSERATVTVD-----VCFAAFSGTDRKKRGKSDKR 124

Query: 88  EILISRMIDR--SIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
            + +   + R  +   L +   ++E  + ++++  D         + AA+ AL+ +G+P 
Sbjct: 125 VLEMQSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILA--TCVNAATLALVDAGVPM 182

Query: 146 EGPVVGAQVD-----YINGQYVLNPRLDEDQGSLDLF-----VSGTQDAVLMVELEANQL 195
              V    V        +G+ +L+    E+   +DL        G  D + +++LE  ++
Sbjct: 183 SDYVTACTVASYTNPDESGEPLLDMSSAEE---MDLPGITLATVGRSDKISLLQLE-TKV 238

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
             + +   +  G + C  + + +  + +    +
Sbjct: 239 RLERLEGMLAVGIDGCGKIRQLLDGVIREHGNK 271


>gi|270264442|ref|ZP_06192708.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13]
 gi|270041578|gb|EFA14676.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13]
          Length = 774

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ 
Sbjct: 648 QPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVMEV 707

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I LSM+ +D+  G+
Sbjct: 708 DLQRKRIALSMR-LDEQPGE 726


>gi|74179802|dbj|BAE36478.1| unnamed protein product [Mus musculus]
          Length = 185

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|291557518|emb|CBL34635.1| Transcriptional accessory protein [Eubacterium siraeum V10Sc8a]
          Length = 713

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 24/264 (9%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S++L+     I+  VA   +   ++   F    ++         
Sbjct: 472 VVEDSVNSVGVDLNTASVSLLGYVAGINSAVAKNIVTYREENGVFTNRKELLKVSKLGKK 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +    +       A +         L ++S  +   + Q+  
Sbjct: 532 AYEQCAGFMR-IHGGKYPLDNTSVHPESYK-AAEALLEKCGFKLADVSGGIPSIKEQVRV 589

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
                    I   ++   +G+G   +  I  E      +  D+    +  + +A+I    
Sbjct: 590 ---------IGVKKLSEELGIGEMTLSDIANELAKPGRDPRDELPPPLLRTDVADIN--- 637

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +   I  G V  V+DFG FV     +DGLVHISQ+  + +    +VVK G
Sbjct: 638 --------SLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVG 689

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVV 690
           D V VK+LD D  + +I L+MK V
Sbjct: 690 DIVKVKVLDIDPAKKRISLTMKGV 713


>gi|157816901|ref|NP_001102737.1| nucleolar protein of 40 kDa [Rattus norvegicus]
 gi|149024094|gb|EDL80591.1| similar to PS1D protein (predicted) [Rattus norvegicus]
          Length = 241

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|323164969|gb|EFZ50760.1| protein yhgF [Shigella sonnei 53G]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|320539238|ref|ZP_08038908.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
 gi|320030630|gb|EFW12639.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
          Length = 558

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVVGVINGKVKGGFTVELS 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD V +K+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEVTIKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V   G  +G + +S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYLSINKKGTIVTGKVTAVDAKGATVELAGGVEGYLRVSEASRDRIEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + + LS++  D+   K ++
Sbjct: 497 VGDEVEAKFTGVDRKNRVVSLSVRAKDEADEKDVI 531



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        ++  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEVTIKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVRDYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ T+K+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEVTIKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|260857514|ref|YP_003231405.1| putative transcriptional accessory protein [Escherichia coli
           O26:H11 str. 11368]
 gi|260870133|ref|YP_003236535.1| putative transcriptional accessory protein [Escherichia coli
           O111:H- str. 11128]
 gi|257756163|dbj|BAI27665.1| predicted transcriptional accessory protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257766489|dbj|BAI37984.1| predicted transcriptional accessory protein [Escherichia coli
           O111:H- str. 11128]
 gi|323154240|gb|EFZ40443.1| protein yhgF [Escherichia coli EPECa14]
 gi|323179068|gb|EFZ64642.1| protein yhgF [Escherichia coli 1180]
          Length = 773

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|83647658|ref|YP_436093.1| 30S ribosomal protein S1 [Hahella chejuensis KCTC 2396]
 gi|83635701|gb|ABC31668.1| ribosomal protein S1 [Hahella chejuensis KCTC 2396]
          Length = 559

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A +  +     I  ++    +    
Sbjct: 66  DEVEVALDAVEDGFGETRLSREKAKRAEAWKDLEKAFEANEVVNGVINGKVKGGFTVELG 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLEGKDLEFKVIKLDQKRN-----NVVVSRRAVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAERDALLQTLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEITVKVLKFDRERNRVSLGLKQLGEDPWVAI 270



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    ++     VN+ D+ TVK+          +        +   +I +    N    
Sbjct: 222 DMAWKRIKHPSEIVNVGDEITVKVLKFDRERNRVSLGLKQLGEDPWVAIKERYPENTRVT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            +V  + D+G F       +GLVH+S++    +    S VV+ GD + V +LD D+ R +
Sbjct: 282 ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQLGDELEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 342 ISLGIKQCHANPWEE 356



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     T + E   I  G V  V    A +      +  +  S++S ++V    +V+KEG
Sbjct: 439 DPFAEFTQLNEKGSIVTGTVKSVDAKAAVIALNDDVEATLKASEISRDKVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V  K++  D + + I LS+K  D +  K
Sbjct: 499 DEVEAKIISVDRKNRVINLSIKSKDIDEEK 528



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 123/360 (34%), Gaps = 62/360 (17%)

Query: 366 LSGTQRNDFMMHY----NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +       FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELGGIRAFLPGSLVDVRPIRDT-------AHLEGKDLEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVLEAENSAERDAL----LQTLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRIKHPSEIVNVG-----DEITVKVLKFDRERNRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              + E   +    T RV  +           G+ G V    ++ T   +          
Sbjct: 267 WVAIKERYPENTRVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQLGD 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++                       +          G++  + DFG F+ 
Sbjct: 327 ELEVMVLDIDEERRRISLGIKQCHAN----PWEEFSGKFNKGDRISGKIKSITDFGIFLG 382

Query: 639 FCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S        + V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 383 LEGGIDGLVHLSDISWNEPG--EEAVRKYKKGDDLETVILSIDPERERISLGIKQLESDP 440


>gi|260599708|ref|YP_003212279.1| protein YhgF [Cronobacter turicensis z3032]
 gi|260218885|emb|CBA34240.1| Protein yhgF [Cronobacter turicensis z3032]
          Length = 787

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   + +G V  V +FGAFV     +DG
Sbjct: 630 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDG 689

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 690 LVHISSLSDKFVEDPHTVVKAGDIVKVKVLEVDLPRKRIALTMR-LDEQPGE 740


>gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3]
 gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3]
          Length = 492

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + ++  G
Sbjct: 258 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRQFARTHAIGQVVPG 312

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D DR +I 
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRIS 372

Query: 685 LSMKVVDQNTG 695
           LS+K  ++ TG
Sbjct: 373 LSLKQANEATG 383



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS         +I KG V  +++FGAFV 
Sbjct: 181 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVD 240

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 241 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWR 298



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 50  DIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDK 109

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 110 EGRLILSKKRAQ 121


>gi|322515333|ref|ZP_08068330.1| YhgF like protein [Actinobacillus ureae ATCC 25976]
 gi|322118709|gb|EFX90921.1| YhgF like protein [Actinobacillus ureae ATCC 25976]
          Length = 779

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V +   VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEEPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+L+ D  R +I L+M++ D+ T KP
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPTDKP 736


>gi|312867675|ref|ZP_07727881.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
 gi|311096738|gb|EFQ54976.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
          Length = 399

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S        +      +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAESAAARAEVFGKLNVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIQVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|260913659|ref|ZP_05920135.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
 gi|260632198|gb|EEX50373.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
          Length = 549

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 93/182 (51%), Gaps = 9/182 (4%)

Query: 520 ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
           AL++A   +  ++  ++ KV     ++L      +    +    +R  + + GK +   V
Sbjct: 97  ALEKAYEEQATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRPVRETLHLEGKELEFKV 156

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            +   K N      V ++  ++ E E ++E  + + ++ E +++ KG V  + D+GAFV 
Sbjct: 157 IKLDQKRN-----NVVVSRRAVIESENSQEREQILENLQEGSEV-KGIVKNLTDYGAFVD 210

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD DR ++ L +K + Q+    
Sbjct: 211 L-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVA 269

Query: 698 IV 699
           I 
Sbjct: 270 IA 271



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQILENLQEGSEVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   V  
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVES 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKPNPW 354



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 132/370 (35%), Gaps = 66/370 (17%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           +EQ   +  ++G  +  F +  N    FLP +  +   +     RE  H  L  + +   
Sbjct: 103 EEQATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRPV-----RETLH--LEGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     +    L  +  G  +         G+VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESENSQEREQI----LENLQEGSEVK--------GIVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        I+  ++        + R
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKF-----DKDR 252

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGA 583
             +   + ++  +  + + E  P    +      + +      I  G + +  + E    
Sbjct: 253 TRVSLGLKQLGQDPWVAIAENHPVESKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWT 312

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVV 628
             NI     V +       +    E  R                  +        +G++ 
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIK 372

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFDD-RGKIK 684
            + DFG F+   G  DGLVH+S +S    A   + V   K+GD V   +L  D  + +I 
Sbjct: 373 SITDFGIFIGLEGGIDGLVHLSDISWN--ASGEEAVRNYKKGDEVAAVVLQVDAVKERIS 430

Query: 685 LSMKVVDQNT 694
           L +K ++++ 
Sbjct: 431 LGIKQLEEDP 440



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   +   +VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVAVNKKGAVLSAKVVEADAKGAKVELDGGVEGYIRAADLTNE--------VSAG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS++  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVRAKDQ 516


>gi|119505043|ref|ZP_01627119.1| Flagellar biosynthesis protein FliR [marine gamma proteobacterium
           HTCC2080]
 gi|119459025|gb|EAW40124.1| Flagellar biosynthesis protein FliR [marine gamma proteobacterium
           HTCC2080]
          Length = 557

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 89/215 (41%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +   +  A    +     I  ++    +    
Sbjct: 66  DEVQVALETVEDGFGETKLSREKAKRAEAWKRLEAAHVADEVVTGIINGKVKGGFTVDIE 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      I    +R    + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 SIRAFLPGSL---IDVRPVRETTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVMEAA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            ++E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSQEREELLENLQEGMSV-KGVVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + G  + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 EVGQEMDVKILKFDRERNRVSLGLKQLGEDPWVEI 270



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT+          +V  + D+G F       +GLVH+S++    +    S +V+ 
Sbjct: 265 DPWVEITNRYPEGARVNAKVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D DR +I L +K   QN  
Sbjct: 325 GDEVEVMVLDIDEDRRRISLGIKQCTQNPW 354



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 92/260 (35%), Gaps = 46/260 (17%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +  +M +  +  +       
Sbjct: 197 GVVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVEVGQEMDVKILKFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +  +++    P    +      + +      I  G + +  +
Sbjct: 250 ---RERNRVSLGLKQLGEDPWVEITNRYPEGARVNAKVTNLTDYGCFAEIEEGVEGLVHV 306

Query: 578 VEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            E                        ++ID+D                +    +      
Sbjct: 307 SEMDWTNKNVHPSKIVQLGDEVEVMVLDIDEDRRRISLGIKQCT----QNPWDAFASDHA 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 G +  + DFG F+   GA DGLVH+S +S        + V   K+GD +   +L
Sbjct: 363 KGDRISGTIKSITDFGIFIGLDGAIDGLVHLSDISWNETG--EEAVRNYKKGDEIETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++++ 
Sbjct: 421 SIDPERERISLGVKQMEEDA 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I  G+ ++V   GA +       G + +  +S ER+     V+  GD+V  K+ + D +
Sbjct: 452 TIVTGKALEVDAKGALIKLSDEVSGYLKVGDISVERIEDARSVINVGDSVEAKITNVDRK 511

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + + LS+K  D    K  V
Sbjct: 512 NRTLGLSIKAKDMADEKEAV 531


>gi|315222942|ref|ZP_07864821.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
 gi|315187892|gb|EFU21628.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
          Length = 399

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V VK+LD + D  ++ LS+K +++  
Sbjct: 328 EVTVKVLDVNADAERVSLSIKALEERP 354



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S      E A      +     V  I  G+V ++  F
Sbjct: 148 RFVGQEFEAKIKEVDPKENRFILSRREVVEEKAAAARAEVFGKLAVGDIVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD + VK+LD ++  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVSVGDEIEVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
 gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
          Length = 405

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +      + +G V +V+DFGAFV      +GLVH+SQ+S + +A  SDV+K GD
Sbjct: 274 PWDAAAEKAPAGTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGD 333

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+LD + +R ++ LS+K +++   
Sbjct: 334 KVQVKVLDVNPERQRLSLSIKALEEAPA 361



 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    ++++    G+ IR  + +  A    D    +        E  AA   I    D  
Sbjct: 144 IENRFVQDLNQYKGQTIRAKIIEINA---ADSRLILSRRDVLNEERSAALARI---FDEL 197

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  + +G+V ++ +FGAF+   G  DGLVH+S++S ERV++ SDV+  G+ V VK+L  
Sbjct: 198 SVGDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGL 256

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I LS+K       
Sbjct: 257 DPERERISLSIKATQPGPW 275


>gi|254447274|ref|ZP_05060741.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
 gi|198263413|gb|EDY87691.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
          Length = 557

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 11/222 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D+  +      +         G T +  +      +  ++  A +  +     I  ++  
Sbjct: 59  DLEVNVGDTVEVALDTVEDGFGETRLSREKAKRARTWAVLEKAHEAEEIVEGEITGKVKG 118

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             +    Q+  F P      +    +R+   + GK +   V +   K N      V ++ 
Sbjct: 119 GFTVEIDQVRAFLPGSL---VDVRPVRDTAYLEGKTLEFKVIKMDRKRN-----NVVVSR 170

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            ++ E   + E    + ++ E   I  G V  + D+GAF+   G  DGL+HI+ ++ +RV
Sbjct: 171 RAVVETMYSEEREELLNNLTEGA-IVTGVVKNLTDYGAFLDL-GGIDGLLHITDMAWKRV 228

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
              S+VV  GD + V +L FD ++ ++ L +K +  +  + I
Sbjct: 229 HHPSEVVAVGDEIQVVVLKFDREKTRVSLGLKQLGDDPWEDI 270



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT          G+V  + D+G FV      +GLVH+S++    +      +V  
Sbjct: 265 DPWEDITRRYPEGSRLFGKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNVNPGKMVAL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK    N  +
Sbjct: 325 GDEVEVMILDIDEERRRISLGMKQCHANPWE 355



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++                     +           +G++  + DFG F+   G  D
Sbjct: 333 LDIDEERRRISLGMKQCHAN----PWEAFAATHNKGDKIEGKIKSITDFGIFIGLDGGID 388

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS + VA    V   K+GD +   +L  D +R +I L +K ++Q+ 
Sbjct: 389 GLVHLSDLSWD-VAGEEAVRDFKKGDELEAVVLAVDPERERISLGVKQLEQDP 440



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V++V   GA +      +G + +S++S ER    +D +  GD V  K    D + 
Sbjct: 453 IVNGTVIEVDAKGARIELDENVEGYLRVSEISRERTESATDALSVGDKVEAKFTGVDRKM 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D +  +
Sbjct: 513 RAITLSIKAKDSDEEQ 528


>gi|115628185|ref|XP_799263.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8,
           partial [Strongylocentrotus purpuratus]
          Length = 667

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-- 643
           + DD G       S  E    + + R  +  PEV ++Y+G+V  VM +G FV     R  
Sbjct: 130 DRDDGGKEAEGGDSRKEKYNDKFVDRPPSLEPEVGEVYEGKVTSVMQYGCFVQLSLRRRC 189

Query: 644 DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +GLVHIS+L  E RVA+ +DVV +G  V VK+L      KI+LSMK VDQN+G+ +
Sbjct: 190 EGLVHISELRKEGRVAEVTDVVSKGQQVKVKVLSIAGT-KIRLSMKDVDQNSGEDL 244


>gi|23346607|ref|NP_694800.1| nucleolar protein of 40 kDa [Mus musculus]
 gi|73921229|sp|Q9ESX4|NO40_MOUSE RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName:
           Full=Putative S1 RNA-binding domain protein; Short=PS1D
           protein; AltName: Full=Zinc finger CCHC
           domain-containing protein 17
 gi|9843775|emb|CAC03718.1| PS1D protein [Mus musculus]
 gi|17390897|gb|AAH18382.1| Zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|29165675|gb|AAH49231.1| Zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|29568410|gb|AAO83392.1| LDC4 [Mus musculus]
 gi|74214498|dbj|BAE31100.1| unnamed protein product [Mus musculus]
 gi|74223177|dbj|BAE40725.1| unnamed protein product [Mus musculus]
 gi|148698192|gb|EDL30139.1| mCG13527 [Mus musculus]
          Length = 241

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|291614014|ref|YP_003524171.1| hypothetical protein Slit_1548 [Sideroxydans lithotrophicus ES-1]
 gi|291584126|gb|ADE11784.1| Tex-like protein protein-like protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 786

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 560 PDQIRNVIGMGGKVI-----RGIVEQTG-AKV-NIDDDGTVKIASSSLAEIEAAREMIRS 612
              I+ VIG GG +      +   EQ G   + +I  +              A+      
Sbjct: 597 KQDIKGVIGNGGLLKSLNPSKYANEQFGVPTITDILKELEKPGRDPRPEFTTASFREGVE 656

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                E   I +G V  V  FGAFV     +DGLVHIS L+ + V     VVK G  V V
Sbjct: 657 ELKDLEPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKAGQIVKV 716

Query: 673 KLLDFD-DRGKIKLSMKVVD---QNTGKP 697
           K+L+ D  R ++ L+M++ D   Q  GKP
Sbjct: 717 KVLEVDVKRKRVSLTMRLTDAAGQAGGKP 745


>gi|149694142|ref|XP_001503960.1| PREDICTED: similar to zinc finger, CCHC domain containing 17 [Equus
           caballus]
          Length = 241

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|153005162|ref|YP_001379487.1| 30S ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5]
 gi|152028735|gb|ABS26503.1| ribosomal protein S1 [Anaeromyxobacter sp. Fw109-5]
          Length = 578

 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 7/123 (5%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            +VE     ++++++        SL   +A  +   ++++   V    KG+V KV DFGA
Sbjct: 435 DVVEAVVLNIDVENE------RFSLGIKQAHVDPWTTLSERHPVGARVKGKVTKVTDFGA 488

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV      +GLVH+S++  ERV    DVV EG  V VK++D D    KI LS+K ++++ 
Sbjct: 489 FVEIEPGIEGLVHVSEMKDERVENPRDVVTEGQEVEVKVIDMDLHERKIALSIKQLNRDG 548

Query: 695 GKP 697
           G+ 
Sbjct: 549 GEE 551



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   V    +G+VV + D+GAF+      +GLVH+S++S  +RV   S +V +
Sbjct: 287 DPWHRADEKYPVGTRVRGKVVSLTDYGAFIELEQGVEGLVHVSEMSWTKRVKHPSKLVNQ 346

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GD V   +LD D +  +I L MK ++ N  
Sbjct: 347 GDQVEAVVLDIDPKAKRISLGMKQIEANPW 376



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           I     + + I E+   KV       G + ++   L E E       ++ ++ E   I K
Sbjct: 160 IRPVRNLDKLIGEKFKFKVIKFNKKRGNIVLSRRVLLEKEREELKKETLKNLKEGA-ILK 218

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           GQV  + D+GAF+   G  DGL+H++ +S  R+   S++ + G  V V +L FD    ++
Sbjct: 219 GQVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRIGHPSEMFEVGQEVRVVVLKFDPASERV 277

Query: 684 KLSMKVVDQNTG 695
            L +K + ++  
Sbjct: 278 SLGLKQIQEDPW 289



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID         S   +   A          P    I +G+V  V DFG FV      D
Sbjct: 355 LDIDPK---AKRISLGMKQIEANPWTLLEDKYPIGTTI-RGEVRNVTDFGVFVGVEEGID 410

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH+S +S  ER+    D  K+GD V   +L+ D +  +  L +K    +  
Sbjct: 411 GLVHVSDISWTERIKHPGDKFKKGDVVEAVVLNIDVENERFSLGIKQAHVDPW 463


>gi|330445635|ref|ZP_08309287.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489826|dbj|GAA03784.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 556

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 23/261 (8%)

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS----------G 499
           G  +   V  I  G V         S I  +E  +  G ++ +V               G
Sbjct: 21  GAIVKGTVVAIENGYVLVDAGLKSESSIPAEEFKNAAGELEIEVGAQIDVALDAIEDGFG 80

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
            T +  +      +   +  A ++A+     I  ++    +     +  F P      + 
Sbjct: 81  ETKLSREKAKRHEAWIQLEKAYEEAETVVGIINGKVKGGFTVELNGIRAFLPGSL---VD 137

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              +R+   +  K +   V +   K N      V ++  ++ E E + E    +  + E 
Sbjct: 138 VRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESENSVERDELLASLQEG 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD 
Sbjct: 193 MEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDR 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           DR ++ L +K + ++    I 
Sbjct: 251 DRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      +    G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 265 DPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L +K    N  +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQ 355



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  ++ 
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEMQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V+    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VSGEEAVRDFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++++ 
Sbjct: 421 AVDAERERISLGVKQIEEDP 440



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S     +   +  G V  V   GA +      +G +  S+ S +RV   + ++  G
Sbjct: 439 DPFNSFVADTKKGALVTGTVTAVDAKGATIELAEGVEGYLRASEASVDRVEDATLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D+V  K    D + + I LS++  D
Sbjct: 499 DSVEAKFTGVDRKNRVINLSVRAKD 523


>gi|291531019|emb|CBK96604.1| Transcriptional accessory protein [Eubacterium siraeum 70/3]
          Length = 713

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 24/264 (9%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S++L+     I+  VA   +   ++   F    ++         
Sbjct: 472 VVEDSVNSVGVDLNTASVSLLGYVAGINSAVAKNIVTYREENGVFTNRKELLKVSKLGKK 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +    +       A +         L ++S  +   + Q+  
Sbjct: 532 AYEQCAGFMR-IHGGKYPLDNTSVHPESYK-AAEALLDKCGFKLADVSGGIPSIKEQVR- 588

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
                   AI   ++   +G+G   +  I  E      +  D+    +  + +A+I    
Sbjct: 589 --------AIGVKKLSEELGIGEMTLSDIANELAKPGRDPRDELPPPLLRTDVADIN--- 637

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +   I  G V  V+DFG FV     +DGLVHISQ+  + +    +VVK G
Sbjct: 638 --------SLKPGMILDGTVRNVIDFGVFVDIGVHQDGLVHISQICDKYIKHPLEVVKVG 689

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVV 690
           D V VK+LD D  + +I L+MK V
Sbjct: 690 DIVKVKVLDIDPAKKRISLTMKGV 713


>gi|317497528|ref|ZP_07955847.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895211|gb|EFV17374.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 632

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 20/203 (9%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAI-----PPDQIRNVI 567
           + I  +  +   R R  I +    +++  + +  E   ++E+ M +             I
Sbjct: 427 QEIEFVISEFNPRKRRVIGDRKQLLVAAKKEKQKELFEKIEVGMKVEGVVKNVTDFGAFI 486

Query: 568 GMGG--------KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-- 617
            +GG        ++  G VE      NI D  TV I      +I  + +       +   
Sbjct: 487 DLGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAE 546

Query: 618 ---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K+
Sbjct: 547 EKYKVGSVVTGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKV 606

Query: 675 LDF-DDRGKIKLSMKVVDQNTGK 696
           +DF  D  KI LSMK +     K
Sbjct: 607 VDFKKDDKKISLSMKALANEEEK 629



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKE 666
           E++          ++ KG V+ V      ++     DG++  S+ S +      + V K 
Sbjct: 282 ELLEESFVTIHNGEVVKGTVIDVKPDEIILNIGYKADGILTRSEYSNDSANVDLTTVAKV 341

Query: 667 GDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           GDT+  K+L   D  G++ L+ K +    G
Sbjct: 342 GDTMETKVLKVNDGEGQVLLTYKRLAAEKG 371


>gi|39949754|ref|XP_363223.1| hypothetical protein MGG_08807 [Magnaporthe oryzae 70-15]
 gi|145009363|gb|EDJ94074.1| hypothetical protein MGG_08807 [Magnaporthe oryzae 70-15]
          Length = 1207

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 5/98 (5%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTS 661
            +   + + D P + K+Y G V  V DFGAFV+  G +   DGLVH+S L+  +RV+  S
Sbjct: 220 QKPARQDLDDTPVLQKVYDGHVTGVKDFGAFVNLHGVKGKVDGLVHVSALTDGQRVSHPS 279

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           D V +G  V VK++   +  +I LSMK VDQ TG+ + 
Sbjct: 280 DFVDKGQPVKVKVIKI-EGSRIGLSMKEVDQQTGEDLA 316


>gi|16273139|ref|NP_439376.1| 30S ribosomal protein S1 [Haemophilus influenzae Rd KW20]
 gi|2500383|sp|Q48082|RS1_HAEIN RecName: Full=30S ribosomal protein S1
 gi|1574150|gb|AAC22873.1| ribosomal protein S1 (rpS1) [Haemophilus influenzae Rd KW20]
          Length = 549

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLIXGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTSE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|322708306|gb|EFY99883.1| ATP-dependent RNA helicase DHX8 [Metarhizium anisopliae ARSEF 23]
          Length = 1196

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL-STERVAKTSD 662
           +     I D P+++K+Y+G V  V DFGAFV+     G  DGLVHIS++ + +RV   SD
Sbjct: 216 KAPYPEIDDAPQLHKVYQGHVTGVRDFGAFVNLHHVRGKVDGLVHISRIIAGQRVNHPSD 275

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           ++ +G  VWVK+    +  +I LSM+ VDQ TG  +
Sbjct: 276 LLSKGQDVWVKVTSV-EGNRIGLSMRDVDQETGMDL 310


>gi|296207298|ref|XP_002750581.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 1 [Callithrix
           jacchus]
 gi|296207300|ref|XP_002750582.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 2 [Callithrix
           jacchus]
          Length = 241

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|320593610|gb|EFX06019.1| ATP-dependent RNA helicase dhx8 [Grosmannia clavigera kw1407]
          Length = 1241

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 13/117 (11%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR- 643
            +  DDG      S   E+         + D PE+ K+Y G V  + DFGAFV+  G R 
Sbjct: 234 YDNYDDGNGNDGRSQRKEV--------EVDDAPELFKVYDGHVTGIKDFGAFVNLHGIRG 285

Query: 644 --DGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             DGLVH+S L   +RV+  SD++  G  V VK++   +  +I LSMK VDQ+TG  
Sbjct: 286 KVDGLVHVSALVDGQRVSHPSDLLTMGQKVLVKVVKI-EGSRIGLSMKDVDQDTGLD 341


>gi|209559262|ref|YP_002285734.1| 30S ribosomal protein S1 [Streptococcus pyogenes NZ131]
 gi|209540463|gb|ACI61039.1| SSU ribosomal protein S1p [Streptococcus pyogenes NZ131]
          Length = 401

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    IE A +  R+          +  G V ++  F
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVIEEAAKEARAEVFSKISEGAVVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS]
 gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS]
 gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS]
 gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS]
 gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS]
 gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS]
          Length = 479

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  +++  AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|15674934|ref|NP_269108.1| 30S ribosomal protein S1 [Streptococcus pyogenes M1 GAS]
 gi|19745977|ref|NP_607113.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS8232]
 gi|50914078|ref|YP_060050.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10394]
 gi|71903360|ref|YP_280163.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS6180]
 gi|71910528|ref|YP_282078.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS5005]
 gi|94988402|ref|YP_596503.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS9429]
 gi|94990283|ref|YP_598383.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10270]
 gi|94992284|ref|YP_600383.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS2096]
 gi|94994205|ref|YP_602303.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS10750]
 gi|306827494|ref|ZP_07460777.1| 30S ribosomal protein S1 [Streptococcus pyogenes ATCC 10782]
 gi|13622077|gb|AAK33829.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes M1 GAS]
 gi|19748138|gb|AAL97612.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes MGAS8232]
 gi|50903152|gb|AAT86867.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10394]
 gi|71802455|gb|AAX71808.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS6180]
 gi|71853310|gb|AAZ51333.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS5005]
 gi|94541910|gb|ABF31959.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS9429]
 gi|94543791|gb|ABF33839.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10270]
 gi|94545792|gb|ABF35839.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS2096]
 gi|94547713|gb|ABF37759.1| SSU ribosomal protein S1P [Streptococcus pyogenes MGAS10750]
 gi|304430292|gb|EFM33318.1| 30S ribosomal protein S1 [Streptococcus pyogenes ATCC 10782]
          Length = 401

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    IE A +  R+          +  G V ++  F
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVIEEAAKEARAEVFSKISEGAVVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
 gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
          Length = 273

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 13/249 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQR--THGSSLFIRGDTQAIVVVTLGTREDEQY 362
            ++     R+DGR    +R I  Q+G  Q     G +   +G T  +     G RE    
Sbjct: 5   ELLNAGGFRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLT-IVSATVFGPREARSG 63

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            + +    R    +  +  P  + E  R     RR +      +    PV+         
Sbjct: 64  ANVMH--DRASVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQ 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I  ++ + DG    A +  S+LAL+DAG+ +   VA ++ G+         + D+S  
Sbjct: 122 IDIFVQVHQQDGGVLPAAINASTLALLDAGIAMQDFVASVSCGI----HSTSAMLDLSNT 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +E  L H+   V      IT   ++ +   +           A +    + NEM   + +
Sbjct: 178 EEQDLPHVTVAVLPRTKQITLASLETR---LHVERFEQIFTLAIQAVAVLHNEMELAVRD 234

Query: 542 SRLQLGEFT 550
               L    
Sbjct: 235 RTKTLVHAM 243



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 9/170 (5%)

Query: 2   FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV 61
           F++ ++ I+  G             +DG    T G T+V ATV   R  + G +      
Sbjct: 20  FELRSIGIQLGGSQDT--------AADGCAQITQGLTIVSATVFGPREARSGANVMHDRA 71

Query: 62  NYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHD 121
           +      +V        RR +R     +  +  I  +  P+        +Q+ I V  H 
Sbjct: 72  SVNVE-VSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQIDIFVQVHQ 130

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
            +      ++ A++ AL+ +G+  +  V        +   +L+    E+Q
Sbjct: 131 QDGGVLPAAINASTLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNTEEQ 180


>gi|325268084|ref|ZP_08134730.1| 30S ribosomal protein S1 [Kingella denitrificans ATCC 33394]
 gi|324980469|gb|EGC16135.1| 30S ribosomal protein S1 [Kingella denitrificans ATCC 33394]
          Length = 563

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 21/243 (8%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKV----------AGTDSGITAMQMDMKIGGIS 513
             +V  G     L DI+  ++  G ++ KV               G T +  +       
Sbjct: 40  FVIVNAGLKSESLIDIAEFKNAHGDLEVKVGDFVTVTIESVENGFGETKLSREKAKRAAD 99

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A++        I  ++   L+     +  F P      +    I++     GK 
Sbjct: 100 WITLEEAMEDGVILSGVINGKVKGGLTVMINSIRAFLPGSL---VDVRPIKDTSHFEGKE 156

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   V +   K N      V ++  ++ E     E    + ++ E   + KG V  + D+
Sbjct: 157 VEFKVIKLDRKRN-----NVVVSRRAVLEATLGEERKALMENLQEG-TLVKGIVKNITDY 210

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD D+ ++ L +K + +
Sbjct: 211 GAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLRFDQDKQRVSLGLKQLGE 269

Query: 693 NTG 695
           +  
Sbjct: 270 DPW 272



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P+ ++++ G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +L
Sbjct: 280 PQGHRLF-GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL 338

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           D D D+ +I L MK    N  + 
Sbjct: 339 DIDEDKRRISLGMKQCQPNPWQD 361



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D   K   S   +            +  + +KI KG V  + DFG FV   G  D
Sbjct: 338 LDIDED---KRRISLGMKQCQPNPWQDFEANFKKGDKI-KGAVKSITDFGVFVGLPGNID 393

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 394 GLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 445



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA +      +G +  S+  +ERV   +  +KEGD V   + + D + 
Sbjct: 458 LVKGSVKSVEAKGAVIALGDEVEGYLPASEFDSERVEDLTTKLKEGDEVEAIITNVDRKN 517

Query: 682 K-IKLSMKVVD 691
           + IKLS+K  D
Sbjct: 518 RSIKLSVKAKD 528


>gi|317049904|ref|YP_004117552.1| Tex-like protein [Pantoea sp. At-9b]
 gi|316951521|gb|ADU70996.1| Tex-like protein [Pantoea sp. At-9b]
          Length = 777

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+++ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|253987636|ref|YP_003038992.1| hypothetical protein PAU_00153 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779086|emb|CAQ82246.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 784

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS LS   VA    VVK GD V VK+L+ D +
Sbjct: 661 MVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVADPHTVVKAGDIVKVKVLEVDLN 720

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 721 RKRIALTMR-LDEQPGE 736


>gi|119628028|gb|EAX07623.1| zinc finger, CCHC domain containing 17, isoform CRA_c [Homo
           sapiens]
          Length = 226

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|262370393|ref|ZP_06063719.1| ribosomal protein S1 [Acinetobacter johnsonii SH046]
 gi|262314735|gb|EEY95776.1| ribosomal protein S1 [Acinetobacter johnsonii SH046]
          Length = 558

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDKERNRVSLGLKQLGEDPWLAIM 271



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I +      I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDKERNRVSLGLKQLG----EDPWLAIMNRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA +      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDARGATLKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 + R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------KERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        + 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNHDK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQMNSDP 440


>gi|126666627|ref|ZP_01737605.1| General secretion pathway protein J [Marinobacter sp. ELB17]
 gi|126629015|gb|EAZ99634.1| General secretion pathway protein J [Marinobacter sp. ELB17]
          Length = 304

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V +FGAFV     +DGLVHIS L+   +    +VVK GD V VK+++ 
Sbjct: 164 EPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISALADRFIKDPREVVKAGDIVKVKVMEV 223

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I L+M++ DQ   +P
Sbjct: 224 DIPRKRIALTMRMGDQPGQQP 244


>gi|122921517|pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
           Pseudomonas Aeruginosa
          Length = 780

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 549 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 605

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 606 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 663

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 664 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 723

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 724 MRMSDTPGEKVEGQRGGRP 742


>gi|15603313|ref|NP_246387.1| hypothetical protein PM1448 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721827|gb|AAK03532.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 791

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 547 GEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
            E  P VE +       I +++G         V Q  AK  IDD   +        E+E 
Sbjct: 589 PEAYPVVEKILQATEQSIHDLMGNTSA-----VRQLDAKKFIDDQFGLPTVQDIFKELEK 643

Query: 606 AREMIR------------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                R               +  +V  I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 644 PGRDPRGEFKTATFMDGVEDINDLKVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 703

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            + V     VVK GD V VK+L+ D  R +I L+M++ ++   K + 
Sbjct: 704 DKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMRLEEKPVDKNVA 750


>gi|254238102|ref|ZP_04931425.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170033|gb|EAZ55544.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 779

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|167766699|ref|ZP_02438752.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1]
 gi|167711636|gb|EDS22215.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1]
 gi|291558359|emb|CBL37159.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [butyrate-producing bacterium SSC/2]
          Length = 632

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 20/203 (9%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAI-----PPDQIRNVI 567
           + I  +  +   R R  I +    +++  + +  E   ++E  M +             I
Sbjct: 427 QEIEFVISEFNPRKRRVIGDRKQLLVAAKKEKQKELFEKIEAGMKVEGVVKNVTDFGAFI 486

Query: 568 GMGG--------KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-- 617
            +GG        ++  G VE      NI D  TV I      +I  + +       +   
Sbjct: 487 DLGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAE 546

Query: 618 ---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V  +  G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+  G  +  K+
Sbjct: 547 EKYKVGSVVTGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKV 606

Query: 675 LDF-DDRGKIKLSMKVVDQNTGK 696
           +DF  D  KI LSMK +     K
Sbjct: 607 VDFKKDDKKISLSMKALANEEEK 629



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKE 666
           E++          ++ KG V+ V      ++     DG++  S+ S +      + V K 
Sbjct: 282 ELLEESFVTIHNGEVVKGTVIDVKPDEIILNIGYKADGILTRSEYSNDSANVDLTTVAKV 341

Query: 667 GDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           GDT+  K+L   D  G++ L+ K +    G
Sbjct: 342 GDTMETKVLKVNDGEGQVLLTYKRLAAEKG 371


>gi|94676844|ref|YP_588705.1| 30S ribosomal protein S1 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219994|gb|ABF14153.1| ribosomal protein S1 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 558

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 11/213 (5%)

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           +    +         G T +  D      +  ++  A ++A      I +++    +   
Sbjct: 65  NDQVDVALDAVEDGFGETILSRDKAKRHEAWLMLEQAYEEAAIVTGIINSKVKGGFTVEL 124

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             +  F P   +   P   +R+ + + GK +   V +   K N      V ++  ++ E 
Sbjct: 125 NGIRAFLPGSLVDMRP---VRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIES 176

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E + E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++
Sbjct: 177 ENSFERDNLLENMQEGMEV-KGLVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEI 234

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V  GD + VK+L FD +R ++ L +K + Q+  
Sbjct: 235 VTIGDEIIVKILKFDRERTRVSLGLKQLSQDPW 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     V I D+  VKI          +       ++   +I      N    
Sbjct: 222 DMAWKRVKHPSEIVTIGDEIIVKILKFDRERTRVSLGLKQLSQDPWYAIAQRYPENSRLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV   D V + +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVNVNDIVEIMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCQANPWQ 355



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 97/255 (38%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           GLVK+  D+    D+ G +   H+  M +K     S I  +  ++ +      I+    +
Sbjct: 197 GLVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVTIGDEIIV-----KILKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMA---------------IPPDQI-- 563
           + +       +  +    +++   +    T RV  +                +   ++  
Sbjct: 252 RTRVSLGLKQLSQDPWYAIAQRYPENSRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 564 --RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
             +NV       +  IVE     ++ID++           +        +   +  E   
Sbjct: 312 TNKNVHPSKVVNVNDIVE--IMVLDIDEERRRISLGLKQCQAN----PWQKFAETHEKGD 365

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-D 679
             +G++  + DFG F+   G  DGLVH+S +       + +   K+G+ +   +L  D +
Sbjct: 366 RVEGKIKSITDFGIFIGLEGGIDGLVHLSDIYWNLSGEEAAREYKKGEEIAAVVLQVDAE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K +DQ+ 
Sbjct: 426 RERISLGIKQLDQDP 440



 Score = 44.5 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD---VVKEGDTVWVKLLDFD 678
           I  G+++ V D GA +      +G +      T+ V    D   ++  GD +   L+  D
Sbjct: 453 IVSGKIIAVDDKGALIQLASGVEGYLRT--FDTDSVESRRDSAMLLNIGDNIEATLIGVD 510

Query: 679 DRGK-IKLSMKVVDQNTGK 696
            + + I LS++  D+   K
Sbjct: 511 RKNRFINLSIRNKDEVDDK 529


>gi|304397826|ref|ZP_07379702.1| Tex-like protein [Pantoea sp. aB]
 gi|304354537|gb|EFM18908.1| Tex-like protein [Pantoea sp. aB]
          Length = 775

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|319947109|ref|ZP_08021343.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
 gi|319747157|gb|EFV99416.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
          Length = 399

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A+      +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDAKENRFILSRREVVEAASAAARAEVFGKLNVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|301777191|ref|XP_002924018.1| PREDICTED: nucleolar protein of 40 kDa-like [Ailuropoda
           melanoleuca]
          Length = 241

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|218894303|ref|YP_002443173.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           LESB58]
 gi|218774532|emb|CAW30349.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           LESB58]
          Length = 779

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|178847555|pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
           Aeruginosa, Crystal Form I
 gi|178847556|pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
           Aeruginosa, Crystal Form 2
          Length = 785

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|73950483|ref|XP_535332.2| PREDICTED: similar to putative S1 RNA binding domain protein [Canis
           familiaris]
          Length = 241

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|107104303|ref|ZP_01368221.1| hypothetical protein PaerPA_01005377 [Pseudomonas aeruginosa PACS2]
 gi|254243916|ref|ZP_04937238.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126197294|gb|EAZ61357.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 779

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|126641617|ref|YP_001084601.1| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
 gi|184157939|ref|YP_001846278.1| 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
 gi|183209533|gb|ACC56931.1| putative 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
          Length = 479

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      +   +    +  +     I  ++    +     +  F P   +   
Sbjct: 2   GQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPVRAFLPGSLVDTR 61

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   IR+   + GK +   V +  AK N   +  V   +   AE  A RE + +     E
Sbjct: 62  P---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSADREALLAQ---LE 112

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ G  V VK+L FD
Sbjct: 113 EGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD 171

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            +R ++ L +K + ++    I+
Sbjct: 172 RERNRVSLGLKQLGEDPWLAIM 193



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 47  GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 94

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 95  VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 154

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 155 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 210

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 211 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 270

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 271 TRANPWEE 278



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 371 ERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 430

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 431 DRKSRSINLSIKAKDEAEEKEAV 453



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 116 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 171

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 172 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 225

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 226 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSHEK 285

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 286 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 345

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 346 AEGNRISLGIKQLNSDP 362


>gi|77412572|ref|ZP_00788862.1| ribosomal protein S1 [Streptococcus agalactiae CJB111]
 gi|77161374|gb|EAO72395.1| ribosomal protein S1 [Streptococcus agalactiae CJB111]
          Length = 332

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 200 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQ 259

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ + D  ++ LSMK +++   +
Sbjct: 260 EVTVKVLEVNSDAERVSLSMKALEERPAQ 288



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +E  A    + +    EV  +  G+V ++  F
Sbjct: 80  KFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSF 139

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 140 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTP 198

Query: 693 NTG 695
              
Sbjct: 199 GPW 201


>gi|139473926|ref|YP_001128642.1| 30S ribosomal protein S1 [Streptococcus pyogenes str. Manfredo]
 gi|134272173|emb|CAM30418.1| putative 30S ribosomal protein S1 [Streptococcus pyogenes str.
           Manfredo]
          Length = 401

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    IE A +  R+          +  G V ++  F
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVIEEAAKEARAEVFSKISEGAVVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           G F+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GVFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|21361576|ref|NP_057589.2| nucleolar protein of 40 kDa [Homo sapiens]
 gi|114555227|ref|XP_001158793.1| PREDICTED: putative S1 RNA binding domain protein isoform 6 [Pan
           troglodytes]
 gi|114555229|ref|XP_001158835.1| PREDICTED: putative S1 RNA binding domain protein isoform 7 [Pan
           troglodytes]
 gi|114555231|ref|XP_001158878.1| PREDICTED: putative S1 RNA binding domain protein isoform 8 [Pan
           troglodytes]
 gi|114555233|ref|XP_001158920.1| PREDICTED: putative S1 RNA binding domain protein isoform 9 [Pan
           troglodytes]
 gi|114555235|ref|XP_001158971.1| PREDICTED: nucleolar protein of 40 kDa isoform 10 [Pan troglodytes]
 gi|73921227|sp|Q9NP64|NO40_HUMAN RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName:
           Full=Pnn-interacting nucleolar protein; AltName:
           Full=Putative S1 RNA-binding domain protein; Short=PS1D
           protein; AltName: Full=Zinc finger CCHC
           domain-containing protein 17
 gi|7106876|gb|AAF36163.1|AF151077_1 HSPC243 [Homo sapiens]
 gi|7023499|dbj|BAA91984.1| unnamed protein product [Homo sapiens]
 gi|10433933|dbj|BAB14066.1| unnamed protein product [Homo sapiens]
 gi|10436319|dbj|BAB14799.1| unnamed protein product [Homo sapiens]
 gi|13938589|gb|AAH07446.1| Zinc finger, CCHC domain containing 17 [Homo sapiens]
 gi|29792265|gb|AAH50609.1| Zinc finger, CCHC domain containing 17 [Homo sapiens]
 gi|55665390|emb|CAH71849.1| zinc finger, CCHC domain containing 17 [Homo sapiens]
 gi|119628026|gb|EAX07621.1| zinc finger, CCHC domain containing 17, isoform CRA_b [Homo
           sapiens]
 gi|119628029|gb|EAX07624.1| zinc finger, CCHC domain containing 17, isoform CRA_b [Homo
           sapiens]
 gi|123993141|gb|ABM84172.1| zinc finger, CCHC domain containing 17 [synthetic construct]
 gi|124000131|gb|ABM87574.1| zinc finger, CCHC domain containing 17 [synthetic construct]
 gi|261859994|dbj|BAI46519.1| zinc finger, CCHC domain containing 17 [synthetic construct]
          Length = 241

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|242239665|ref|YP_002987846.1| 30S ribosomal protein S1 [Dickeya dadantii Ech703]
 gi|242131722|gb|ACS86024.1| ribosomal protein S1 [Dickeya dadantii Ech703]
          Length = 557

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A +++      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEESATVTGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   V +   I  G+V  V   GA V      +G +  S+ S +R+   + V+ 
Sbjct: 437 AEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRIEDATLVLN 496

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD +  K    D + + + LS++  D+   K  +
Sbjct: 497 VGDEIEAKYTGVDRKNRVVSLSIRAKDEADEKDAI 531



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLAEDP 440



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|157149853|ref|YP_001450520.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074647|gb|ABV09330.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 401

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            V VK+L+ +    ++ LS+K +++   
Sbjct: 328 EVTVKVLEVNPANERVSLSIKALEERPA 355



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S        A      +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAEAATARAEVFGKLNVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|169611168|ref|XP_001799002.1| hypothetical protein SNOG_08693 [Phaeosphaeria nodorum SN15]
 gi|111062741|gb|EAT83861.1| hypothetical protein SNOG_08693 [Phaeosphaeria nodorum SN15]
          Length = 1217

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 16/137 (11%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-----------SITDVPEVNKIYKGQ 626
            E+    V  D+ G  +            +                + D P + K+Y G+
Sbjct: 194 QEEHDELVFQDEFGRTRTVKRQDKTRSRKKYRDEDLDEFRRPPTPELDDEPVLYKVYDGK 253

Query: 627 VVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           V  V DFG FV+  G +   DGLVH++Q+    RV   SD+V     V VK++   + G+
Sbjct: 254 VTGVKDFGCFVNLQGVKGKVDGLVHVTQMVEGARVNHPSDIVSRMQQVKVKVVKM-ENGR 312

Query: 683 IKLSMKVVDQNTGKPIV 699
           I LSMK VDQ +G+ + 
Sbjct: 313 ISLSMKEVDQQSGRDLA 329


>gi|90581253|ref|ZP_01237051.1| 30S ribosomal protein S1 [Vibrio angustum S14]
 gi|90437624|gb|EAS62817.1| 30S ribosomal protein S1 [Vibrio angustum S14]
          Length = 556

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 105/261 (40%), Gaps = 23/261 (8%)

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS----------G 499
           G  +   V  I  G V         S I  +E  +  G ++ +V               G
Sbjct: 21  GAIVKGTVVAIENGYVLVDAGLKSESSIPAEEFKNAAGELEIEVGAQVDVALDAIEDGFG 80

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
            T +  +      +   +  A + A+     I  ++    +     +  F P      + 
Sbjct: 81  ETKLSREKAKRHEAWIQLEKAYEDAETVVGIINGKVKGGFTVELNGIRAFLPGSL---VD 137

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              +R+   +  K +   V +   K N      V ++  ++ E E + E    +  + E 
Sbjct: 138 VRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESENSVERDELLASLQEG 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD 
Sbjct: 193 MEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDR 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L +K + ++    I 
Sbjct: 251 ERTRVSLGLKQLGEDPWVAIA 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D+ R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 132/360 (36%), Gaps = 62/360 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------AHLENKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    LA +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDEL----LASLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 267 WVAIAKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +S  ++        G++  + DFG F+ 
Sbjct: 327 EVEVMVLDIDEERRRISLGLKQCKAN----PWQSFAEMQAKGDKVTGKIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S        D V   K+GD +   +L  D +R +I L +K ++++ 
Sbjct: 383 LEGGIDGLVHLSDISWN--VSGEDAVRDFKKGDEISAVVLAVDAERERISLGVKQIEEDP 440



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S     +   +  G+V  V   GA V      +G +  S+ S +RV   + V+  G
Sbjct: 439 DPFNSFVADTKKGALVTGKVTAVDAKGATVELGEGIEGYLRASEASVDRVEDATLVLSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D+V  K    D + + I LS++  D
Sbjct: 499 DSVEAKFTGVDRKNRVINLSVRAKD 523


>gi|56420760|ref|YP_148078.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426]
 gi|56380602|dbj|BAD76510.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426]
          Length = 387

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P  + +     GK +   V +        +   V ++  ++ E E AR+    ++ + 
Sbjct: 137 VEPHYVEDFSDYKGKTLAVKVVELDR-----EKNRVILSHRAVVEEEQARQQKELLSRL- 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V ++ DFG FV   G  DGLVHISQLS  RVA  S+VVKEGD V VK+L  
Sbjct: 191 EPGQVLDGVVRRIADFGVFVDVGGF-DGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAV 249

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++G++ LS+K       +
Sbjct: 250 DPEQGRLSLSIKEALPGPWE 269



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               + +  +   +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD
Sbjct: 267 PWEGLGEKVKPGDVVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326

Query: 669 TVWVKLLDFDD-RGKIKLSMK 688
            V  K+LD ++   ++ LS++
Sbjct: 327 VVKAKVLDVNEADHRLSLSIR 347



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           E +    +V EV  I +G+VVK+ D    V    ++  G++ IS+LS   + K SD V  
Sbjct: 3   EEMNVQVNVYEVGDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAV 62

Query: 667 GDTVWVKLLDFD-----DRGKIKLSMKVVD-QNTGKPI 698
           GD V  K+   +     + G + LS + VD +   + +
Sbjct: 63  GDEVTAKVKKVEEGKDGEEGLLILSKRAVDAERAWEDL 100


>gi|311086046|gb|ADP66128.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 558

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  A ++++     I  ++    +     +  F P      +    +R+ I + GK + 
Sbjct: 97  ILEKAHEKSETVIGIINGKVKGGFTVELNDIRAFLPGSL---VDVRPVRDTIHLEGKELE 153

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             V +   K N      V ++  ++ E E + E  + + ++ E   + KG V  + D+GA
Sbjct: 154 FKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLENLQEGMHV-KGIVKNLTDYGA 207

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +RV   S++V  GD + +K+L FD +R ++ L +K + ++ 
Sbjct: 208 FVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  I+    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINIKILKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +S+   +  + + RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +I   +E   +      V    
Sbjct: 312 TNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKINPWKEFSETHKKGVHVL--- 368

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV--KEGDTVWVKLLDFD-DR 680
            G++  + DFG F+   G  DGLVH+S +S   +     VV  K+ D +   +L  D +R
Sbjct: 369 -GKIKSITDFGIFIGLNGGIDGLVHLSDISWT-IPGEEAVVKYKKNDEISAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K ++++ 
Sbjct: 427 ERISLGIKQLEEDP 440



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  +KI          +        +   +I+          
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLS 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV   D V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  K 
Sbjct: 342 ISLGLKQCKINPWKE 356



 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G +  +      V      +G++ +++++        + +K  
Sbjct: 439 DPFNTYIANHKKGAIITGIIKSLDKKNIIVKLPENLEGVIKLTEITRAYSETMINKLKIE 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           D + VKL  FD + + I L++ ++D++  K +
Sbjct: 499 DKILVKLSSFDRKNRIIYLTIHMIDEDEKKDL 530


>gi|15600394|ref|NP_253888.1| hypothetical protein PA5201 [Pseudomonas aeruginosa PAO1]
 gi|9951507|gb|AAG08586.1|AE004933_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 779

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|56707348|ref|YP_169244.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669818|ref|YP_666375.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456419|ref|ZP_03664892.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370028|ref|ZP_04986035.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874185|ref|ZP_05246895.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56603840|emb|CAG44816.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320151|emb|CAL08199.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568273|gb|EDN33927.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840184|gb|EET18620.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158480|gb|ADA77871.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 556

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++V  +  K I   V +   K N      + ++  ++ E   + +    +  + E
Sbjct: 140 P---IKDVAHLEDKDIELKVVKIDTKRN-----NIVVSRKAVIEENNSGDRDAMLEKISE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 192 GS-VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSITLSIKAVDED 526



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 EVEAVLVSVNTDLERIALSMKQLSEDP 439



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  + V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEIEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRPNPW 354


>gi|104780673|ref|YP_607171.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
 gi|95109660|emb|CAK14361.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
          Length = 558

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 66  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 270



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 279 RVMARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCKSNPWED 356



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I KG V +V   GA V      +  +  S++S +RV    +V+KEG
Sbjct: 439 DPFSNFVALNDKGAIVKGIVKEVDAKGAIVTLGDDIEATLKASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    +  +
Sbjct: 499 EEIEAKIISVDRKSRVISLSIKSKDDAEEREAI 531



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 316 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S     +   V   K+GD +   +L
Sbjct: 362 NKGDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEAGE-EAVRRFKKGDELETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGIKQLEDDP 440


>gi|327395567|dbj|BAK12989.1| protein YhgF [Pantoea ananatis AJ13355]
          Length = 774

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+++ D  
Sbjct: 651 MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|323224272|gb|EGA08561.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 637

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 513 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQ 572

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 573 RKRIALTMR-LDEQPGE 588


>gi|15616919|ref|NP_240132.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681673|ref|YP_002468059.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682228|ref|YP_002468612.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471362|ref|ZP_05635361.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11387054|sp|P57395|RS1_BUCAI RecName: Full=30S ribosomal protein S1
 gi|25294429|pir||B84966 30S ribosomal protein S1 [imported] - Buchnera sp. (strain APS)
 gi|10038983|dbj|BAB13018.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621961|gb|ACL30117.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624516|gb|ACL30671.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086619|gb|ADP66700.1| 30S ribosomal protein S1 [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087202|gb|ADP67282.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087727|gb|ADP67806.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 558

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 11/181 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           I+  A ++++     I  ++    +     +  F P      +    +R+ I + GK + 
Sbjct: 97  ILEKAHEKSETVIGIINGKVKGGFTVELNDIRAFLPGSL---VDVRPVRDTIHLEGKELE 153

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             V +   K N      V ++  ++ E E + E  + + ++ E   + KG V  + D+GA
Sbjct: 154 FKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLENLQEGMHV-KGIVKNLTDYGA 207

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +RV   S++V  GD + +K+L FD +R ++ L +K + ++ 
Sbjct: 208 FVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  I+    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINIKILKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +S+   +  + + RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +I   +E   +      V    
Sbjct: 312 TNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKINPWKEFSETHKKGVHVL--- 368

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV--KEGDTVWVKLLDFD-DR 680
            G++  + DFG F+   G  DGLVH+S +S   +     VV  K+ D +   +L  D +R
Sbjct: 369 -GKIKSITDFGIFIGLNGGIDGLVHLSDISWT-IPGEEAVVKYKKNDEISAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K ++++ 
Sbjct: 427 ERISLGIKQLEEDP 440



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  +KI          +        +   +I+          
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLS 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV   D V V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  K 
Sbjct: 342 ISLGLKQCKINPWKE 356



 Score = 40.7 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G +  +      V      +G++ +++++        + +K  
Sbjct: 439 DPFNTYIANHKKGAIITGIIKSLDKKNIIVKLPENLEGVIKLTEITRVYSETMINKLKIE 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           D + VKL  FD + + I L++ ++D++  K +
Sbjct: 499 DKILVKLSSFDRKNRIIYLTIHMIDEDEKKDL 530


>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens
           YS-314]
 gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
          Length = 485

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EEVMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVQVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 486

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V VK++D D +R +I LS+K  D++
Sbjct: 340 QEVMVKVIDIDLERRRISLSVKQADED 366



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD V   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|145510474|ref|XP_001441170.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408409|emb|CAK73773.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1115

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKE 666
            +      E   IY+G V KV DFG FV   G +   +GLVHIS +  +RV    D++K 
Sbjct: 164 PQRTHRDIEKGHIYEGVVTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKR 223

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              V+VK++   +  KI LSM+ VDQN+G+ I
Sbjct: 224 NQKVFVKVISIVNE-KISLSMRDVDQNSGQEI 254


>gi|328675326|gb|AEB28001.1| SSU ribosomal protein S1p [Francisella cf. novicida 3523]
          Length = 556

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++V  +  K I   V +   K N      + ++  ++ E   + +    +  + E
Sbjct: 140 P---IKDVAHLEDKDIELKVVKIDTKRN-----NIVVSRKAVIEENNSGDRDAMLEKISE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 192 GS-VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSIALSIKAVDED 526



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRPNPW 354



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 EVEAVLVSVNTDLERIALSMKQLSEDP 439


>gi|296392058|ref|ZP_06881533.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           PAb1]
          Length = 779

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|118496773|ref|YP_897823.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           U112]
 gi|194324082|ref|ZP_03057857.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           FTE]
 gi|208779955|ref|ZP_03247298.1| ribosomal protein S1 [Francisella novicida FTG]
 gi|254372138|ref|ZP_04987631.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375284|ref|ZP_04990764.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
 gi|118422679|gb|ABK89069.1| 30S ribosomal protein S1 [Francisella novicida U112]
 gi|151569869|gb|EDN35523.1| 30S ribosomal protein S1 [Francisella novicida GA99-3549]
 gi|151573002|gb|EDN38656.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
 gi|194321979|gb|EDX19462.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
           FTE]
 gi|208743959|gb|EDZ90260.1| ribosomal protein S1 [Francisella novicida FTG]
 gi|328676233|gb|AEB27103.1| SSU ribosomal protein S1p [Francisella cf. novicida Fx1]
          Length = 556

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++V  +  K I   V +   K N      + ++  ++ E   + +    +  + E
Sbjct: 140 P---IKDVAHLEDKDIELKVVKIDTKRN-----NIVVSRKAVIEENNSGDRDAMLEKISE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 192 GS-VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSIALSIKAVDED 526



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRPNPW 354



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 EVEAVLVSVNTDLERIALSMKQLSEDP 439


>gi|109000926|ref|XP_001098481.1| PREDICTED: nucleolar protein of 40 kDa isoform 4 [Macaca mulatta]
 gi|109000928|ref|XP_001098574.1| PREDICTED: nucleolar protein of 40 kDa isoform 5 [Macaca mulatta]
 gi|90077370|dbj|BAE88365.1| unnamed protein product [Macaca fascicularis]
          Length = 241

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|77736247|ref|NP_001029824.1| nucleolar protein of 40 kDa [Bos taurus]
 gi|74354076|gb|AAI02396.1| Zinc finger, CCHC domain containing 17 [Bos taurus]
 gi|95769249|gb|ABF57421.1| putative S1 RNA binding domain protein [Bos taurus]
 gi|296490195|gb|DAA32308.1| zinc finger, CCHC domain containing 17 [Bos taurus]
          Length = 241

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 270

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 10/218 (4%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +   VG++    GS+      T+ I  V  G     Q     + ++  
Sbjct: 43  REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAV-YGPH--AQTGGDSAFSEEG 99

Query: 373 DFMMHYNFLPCA--TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                +++ P A   G     G     E     L R+ +   +         + +   + 
Sbjct: 100 QLQCDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVL 159

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           ++DG         +S+AL DAG+ +   V   ++G         ++ D + +E+  G   
Sbjct: 160 QADGGELAVATTCASMALADAGIELYDLVTACSVGYC----GTQMVLDPTKEEEKSGAGV 215

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
             +A         Q   + G      +  AL+    G 
Sbjct: 216 MTIALMPGSQQVTQW-WQEGRFDGQKVAEALELCTDGC 252



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 12/165 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYA 69
           R + ++ G +A  + G+    +  T V+  V    +   G   F     L  ++    +A
Sbjct: 53  RQVYMDVGVVAH-ATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFA 111

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH 127
           +   PGG         ++E  +S ++ +++       +  K+   V + V+Q D      
Sbjct: 112 M---PGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELA- 167

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
            V+   AS AL  +G+     V    V Y   Q VL+P  +E++ 
Sbjct: 168 -VATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKS 211


>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
          Length = 486

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQEIEAKIIELDKHRNNVVLSRRAYLEETQSAVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     +V  G
Sbjct: 280 DPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQIVNVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EEVMVKVIDIDLERRRISLSLKQADED 366



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV+ GD +   +L   D 
Sbjct: 35  DIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|77360368|ref|YP_339943.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis TAC125]
 gi|76875279|emb|CAI86500.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
           component of the degradosome [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 555

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++ +     I  ++    +    
Sbjct: 66  DEVDVALDAIEDGFGETILSREKAKRHEAWIRLEKACEEQETVTGVINGKVKGGFTVEVD 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 SIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            ++E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSQEREELLANLVEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD D+ ++ L +K + ++    I 
Sbjct: 236 NVGDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIA 271



 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD+V V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDSVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
           + D+ R +I L +K    N  + 
Sbjct: 334 EIDEERRRISLGLKQCIANPWQE 356



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V +V   GA +      +G + ++ ++ ERV   + VV  GD + VK +  D + 
Sbjct: 453 IVKGKVTEVDAKGATIELIEGVEGYIRVADIAQERVEDATTVVSVGDEIEVKYVGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K + +   K ++
Sbjct: 513 RTLSLSVKALFEAEEKEVI 531



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
             +    +        G++  + DFG F+   G  DGLVH+S +S            K+G
Sbjct: 353 PWQEFARLQNKGDQVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNTPGEDAVREFKKG 412

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D +   +L  D +R +I L +K ++ + 
Sbjct: 413 DEITAIVLQVDPERERISLGVKQIEADP 440


>gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK]
 gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1P [Mycobacterium sp. Spyr1]
 gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK]
 gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium sp. Spyr1]
          Length = 481

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +      I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 22/208 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  ++   AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VK++D D +R +I LS+K  +++  + 
Sbjct: 345 MVKVIDIDLERRRISLSLKQANEDYSEE 372



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|116053349|ref|YP_793673.1| hypothetical protein PA14_68710 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588570|gb|ABJ14585.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 779

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --DPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|301064798|ref|ZP_07205172.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
 gi|300441092|gb|EFK05483.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
          Length = 493

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 15/212 (7%)

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           ++        G   +   +  GG    I+  A +++      + +               
Sbjct: 88  LELYAVSVKGGEIRLSKSVAGGG-GLEILQDAYEESIPVEGKVKSLNKGGFDVLLGNRRA 146

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  ++     ++  + +G   + +    E++G  +       +         ++ AR+
Sbjct: 147 FCPISQMDIHYVEKPEDYVGEAFEFLITDFEESGRNI------VLSRRKLLEKAVQKARK 200

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                     V     G+V K+M FGAFV      +G+VHIS+L   RV K SDV++ G+
Sbjct: 201 SFLEN---LVVGSELTGRVTKLMPFGAFVELTPGVEGMVHISELGWSRVEKPSDVLQVGE 257

Query: 669 TVWVKLLDF--DDRG---KIKLSMKVVDQNTG 695
           TV VK+L    D++    KI LS+K    +  
Sbjct: 258 TVMVKVLGVAPDEKSKQMKISLSIKQTADDPW 289



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 9/138 (6%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++  +V+ +G  V+  +       + +  D   K    SL+  + A +   S+TD  + 
Sbjct: 246 VEKPSDVLQVGETVMVKV-------LGVAPDEKSKQMKISLSIKQTADDPWLSVTDRFKE 298

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFD 678
             + +G+V +   FGAFV      +GLVHIS++S  +RV K  DVV  GD + V + + D
Sbjct: 299 GDVVEGKVSRCAPFGAFVEIEPGIEGLVHISEMSYRKRVLKAEDVVSPGDLIQVLIKEID 358

Query: 679 -DRGKIKLSMKVVDQNTG 695
             R +I LSM+ V+ +  
Sbjct: 359 SSRQRISLSMRDVEGDPW 376


>gi|242237776|ref|YP_002985957.1| RNA binding S1 domain protein [Dickeya dadantii Ech703]
 gi|242129833|gb|ACS84135.1| RNA binding S1 domain protein [Dickeya dadantii Ech703]
          Length = 775

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+L+ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVLEVDLP 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|205354872|ref|YP_002228673.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274653|emb|CAR39707.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 775

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|22537308|ref|NP_688159.1| 30S ribosomal protein S1 [Streptococcus agalactiae 2603V/R]
 gi|25011274|ref|NP_735669.1| 30S ribosomal protein S1 [Streptococcus agalactiae NEM316]
 gi|76786829|ref|YP_329853.1| 30S ribosomal protein S1 [Streptococcus agalactiae A909]
 gi|22534178|gb|AAN00032.1|AE014244_9 ribosomal protein S1 [Streptococcus agalactiae 2603V/R]
 gi|23095698|emb|CAD46884.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561886|gb|ABA44470.1| ribosomal protein S1 [Streptococcus agalactiae A909]
 gi|319745155|gb|EFV97478.1| 30S ribosomal protein S1 [Streptococcus agalactiae ATCC 13813]
          Length = 400

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ + D  ++ LSMK +++   +
Sbjct: 328 EVTVKVLEVNSDAERVSLSMKALEERPAQ 356



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +E  A    + +    EV  +  G+V ++  F
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|332254544|ref|XP_003276389.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 1 [Nomascus
           leucogenys]
          Length = 240

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|168235097|ref|ZP_02660155.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168818684|ref|ZP_02830684.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194735081|ref|YP_002116446.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249394|ref|YP_002148427.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|204928818|ref|ZP_03220017.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|194710583|gb|ACF89804.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197213097|gb|ACH50494.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197291463|gb|EDY30815.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204322251|gb|EDZ07449.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205344464|gb|EDZ31228.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320087919|emb|CBY97681.1| Polyribonucleotide nucleotidyltransferase Polynucleotide
           phosphorylase; PNPase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322614122|gb|EFY11058.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618014|gb|EFY14907.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625372|gb|EFY22198.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629837|gb|EFY26610.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632274|gb|EFY29025.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636375|gb|EFY33082.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643231|gb|EFY39800.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644767|gb|EFY41303.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651208|gb|EFY47592.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654924|gb|EFY51239.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659181|gb|EFY55433.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663118|gb|EFY59322.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668604|gb|EFY64757.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674592|gb|EFY70685.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678202|gb|EFY74263.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682541|gb|EFY78562.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684254|gb|EFY80260.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192191|gb|EFZ77423.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196383|gb|EFZ81535.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201816|gb|EFZ86879.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206358|gb|EFZ91319.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211951|gb|EFZ96778.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216857|gb|EGA01580.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222256|gb|EGA06639.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323228199|gb|EGA12330.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233534|gb|EGA17627.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237004|gb|EGA21071.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243781|gb|EGA27797.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323245977|gb|EGA29964.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250753|gb|EGA34631.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255764|gb|EGA39514.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261378|gb|EGA44964.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267649|gb|EGA51131.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268530|gb|EGA51997.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 776

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|326630018|gb|EGE36361.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 776

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|238921495|ref|YP_002935010.1| hypothetical protein NT01EI_3647 [Edwardsiella ictaluri 93-146]
 gi|238871064|gb|ACR70775.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 779

 Score = 96.5 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D
Sbjct: 649 VGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVEDPHKVVKAGDIVKVKVLEVD 708

Query: 679 D-RGKIKLSMKVVDQNTGK 696
             R +I L+M+ +D+  G+
Sbjct: 709 QARRRIALTMR-LDEQPGE 726


>gi|315126548|ref|YP_004068551.1| 30S ribosomal protein S1 [Pseudoalteromonas sp. SM9913]
 gi|332534571|ref|ZP_08410406.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis ANT/505]
 gi|315015062|gb|ADT68400.1| 30S ribosomal protein S1 [Pseudoalteromonas sp. SM9913]
 gi|332035991|gb|EGI72470.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 555

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++ +     I  ++    +    
Sbjct: 66  DEVDVALDAIEDGFGETILSREKAKRHEAWIRLEKACEEQETVTGVINGKVKGGFTVEVD 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 SIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            ++E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSQEREELLANLVEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD D+ ++ L +K + ++    I 
Sbjct: 236 NVGDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIA 271



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
           + D+ R +I L +K    N  + 
Sbjct: 334 EIDEERRRISLGLKQCIANPWQE 356



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V +V   GA V      +G + ++ ++ ERV   + VV  GD + VK +  D + 
Sbjct: 453 IVKGKVTEVDAKGATVELIEGVEGYIRVADIAQERVEDATTVVSVGDEIEVKYVGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K + +   K ++
Sbjct: 513 RTLSLSVKALFEAEEKEVL 531



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++                    +    + 
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCIAN----PWQEFARLQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S          +  K+GD +   +L
Sbjct: 362 NKGDQVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNTPGEEAVRE-FKKGDEITAIVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 QVDPERERISLGVKQIEADP 440


>gi|207858744|ref|YP_002245395.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710547|emb|CAR34905.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 775

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|119471943|ref|ZP_01614228.1| 30S ribosomal protein S1 [Alteromonadales bacterium TW-7]
 gi|119445201|gb|EAW26492.1| 30S ribosomal protein S1 [Alteromonadales bacterium TW-7]
          Length = 555

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++ +     I  ++    +    
Sbjct: 66  DEVDVALDAIEDGFGETILSREKAKRHEAWIRLEKACEEQETVTGVINGKVKGGFTVEVD 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 SIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            ++E    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSQEREELLANLVEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD D+ ++ L +K + ++    I 
Sbjct: 236 NVGDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIA 271



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L
Sbjct: 275 PEGSKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGKP 697
           + D+ R +I L +K    N  + 
Sbjct: 334 EIDEERRRISLGLKQCIANPWQE 356



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V +V   GA V      +G + ++ ++ ERV   + VV  GD V VK +  D + 
Sbjct: 453 IVKGKVTEVDAKGATVELIEGVEGYIRVADIAQERVEDATTVVSVGDEVEVKYVGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K + +   K ++
Sbjct: 513 RTLSLSVKALFEAEEKEVL 531



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++                    +    + 
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCIAN----PWQEFARLQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S          +  K+GD +   +L
Sbjct: 362 NKGDQVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNTPGEEAVRE-FKKGDEITAIVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 QVDPERERISLGVKQIEADP 440


>gi|83590176|ref|YP_430185.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Moorella thermoacetica ATCC 39073]
 gi|83573090|gb|ABC19642.1| hydroxymethylbutenyl pyrophosphate reductase [Moorella
           thermoacetica ATCC 39073]
          Length = 736

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D    K+  S  A +E   E  R  T    EV ++ KG V ++ +FGAFV   G  DGL+
Sbjct: 506 DRSKNKVVLSRKAILEEEYEKQRQATWNSLEVGQVRKGIVRRLTNFGAFVDL-GGVDGLL 564

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           H+S++S  RV    D + EG  + VK+L  D + GK+ L  K +  N  
Sbjct: 565 HVSEISWGRVEHPRDALSEGQEIEVKILGIDREEGKVSLGRKQLLPNPW 613



 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V  I +G+++++  FGAFV      +GLVHISQL+   V K  DVV  GD
Sbjct: 612 PWDTAAERYPVGTIVEGKILRLAPFGAFVEVEPGIEGLVHISQLADRHVDKPEDVVSIGD 671

Query: 669 TVWVKLLDFDDR-GKIKLSMKV 689
            + VK+L  D +  ++ LS++ 
Sbjct: 672 IIPVKVLGVDQQAQRMSLSLRQ 693



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGL 646
            +G       +    E   EM +    +PE+ +  +  G VV++ D    V   G  +G+
Sbjct: 332 QEGPGVAPGETGTPEEQRNEMQQITARMPELRRGNVVAGTVVQITDNEVMVDVGGKSEGV 391

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDRGKIKLSMKVVD 691
           + +++LS   V    +VV  GDT+ V +L   ++ G   LS +  D
Sbjct: 392 IPLNELSHRNVTDPHEVVAVGDTINVMVLRPENEEGHPVLSKRRAD 437


>gi|262375356|ref|ZP_06068589.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
 gi|262309610|gb|EEY90740.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
          Length = 558

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I +      I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMNRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDAKGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRAINLSIKAKDEAEEKEAV 531



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        + 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKDHDK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQMNNDP 440


>gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
 gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
          Length = 484

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++ +G V  +++FG
Sbjct: 161 YIGQQLEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 221 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279

Query: 694 TGK 696
             +
Sbjct: 280 PWQ 282



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + +I  G+V K++ FGAFV      +GLVHIS+L+T  V     VV  G
Sbjct: 279 DPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELATRHVDLAEQVVSVG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + V+VK++D D DR +I LS+K  ++
Sbjct: 339 EEVFVKIIDIDMDRRRISLSLKQANE 364



 Score = 44.9 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A  E +     V     +  GQVVK+      +      +G++   +LS +     S+V
Sbjct: 17  QAFLEAVEKTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEV 76

Query: 664 VKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
           V+ G  V   +L   D  G++ LS K   
Sbjct: 77  VELGSEVEALVLTKEDKEGRLILSKKRAQ 105


>gi|237728726|ref|ZP_04559207.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909348|gb|EEH95266.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 777

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|115401346|ref|XP_001216261.1| ATP-dependent RNA helicase DHX8 [Aspergillus terreus NIH2624]
 gi|114190202|gb|EAU31902.1| ATP-dependent RNA helicase DHX8 [Aspergillus terreus NIH2624]
          Length = 1228

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           +     + D P + K+Y G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD
Sbjct: 246 KPPPVELDDQPILYKVYDGRVTGVKDFGAFVNLTGVKGKVDGLVHVSAMQEGVRVNHPSD 305

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++      +I LSMK VDQ TG+ ++
Sbjct: 306 LVSRGQPVKVKVVSIQGS-RIGLSMKEVDQATGRDLI 341


>gi|224585298|ref|YP_002639097.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469826|gb|ACN47656.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 776

 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
 gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
          Length = 486

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++ +G V  +++FG
Sbjct: 161 YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQLEKGQVREGVVSSIVNFG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 221 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279

Query: 694 TGK 696
             +
Sbjct: 280 PWQ 282



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 279 DPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLAEQVVSVG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + ++VK++D D DR +I LS+K  ++
Sbjct: 339 EELFVKIIDIDMDRRRISLSLKQANE 364



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  GQVVKV      +      +G++   +LS +      +VV  GD +   +L   D 
Sbjct: 34  DLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEIEALVLTKEDK 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 94  EGRLILSKKRAQ 105


>gi|262372480|ref|ZP_06065759.1| ribosomal protein S1 [Acinetobacter junii SH205]
 gi|262312505|gb|EEY93590.1| ribosomal protein S1 [Acinetobacter junii SH205]
          Length = 560

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLSGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440


>gi|52080799|ref|YP_079590.1| 30S ribosomal protein S1 [Bacillus licheniformis ATCC 14580]
 gi|52786169|ref|YP_091998.1| 30S ribosomal protein S1 [Bacillus licheniformis ATCC 14580]
 gi|319645244|ref|ZP_07999477.1| YpfD protein [Bacillus sp. BT1B_CT2]
 gi|52004010|gb|AAU23952.1| Nucleic acid-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52348671|gb|AAU41305.1| YpfD [Bacillus licheniformis ATCC 14580]
 gi|317393053|gb|EFV73847.1| YpfD protein [Bacillus sp. BT1B_CT2]
          Length = 382

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +  IV      V +D D    I S      +   E  +      
Sbjct: 132 VEAHFVEDFTDYKGKTLTLIV------VELDRDKNRVILSHRAVVEKEQSERKQEFLQTL 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EAGQVLEGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSV 244

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K         I
Sbjct: 245 DRDNERISLSIKETLPGPWSNI 266



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I +  +   +  G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSNIGEKVKPGDVLDGKVQRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+LD + +  +I LSMK +++NT K
Sbjct: 322 DVKVKVLDVNEEEERISLSMKELEENTDK 350



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV  
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVDIPNCKQTGIIPISELSSLHVEKASDVVNV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELELKVTKVEDDALI-LSKRAVDAD 89


>gi|254520264|ref|ZP_05132320.1| RNA-binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914013|gb|EEH99214.1| RNA-binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 724

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G V  V DFGAFV     +DGLVH SQ++   V    DVVK GD V VK+L+ D  
Sbjct: 649 MILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDVVKVGDIVKVKILEVDSK 708

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LSMK + +  
Sbjct: 709 RNRISLSMKDIPKEE 723


>gi|187932428|ref|YP_001885998.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187720581|gb|ACD21802.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 635

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
              + I    E    K+   D    K++ S    +    E ++          I  G+VV
Sbjct: 516 KNIEDILKKGEMIEVKIIALDKENKKLSLSRKELLPKPWENVKEKYPE---GSIVLGKVV 572

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           ++ DFGAF+      DGLVHIS++S  R++  S+V+  G+ V  K+L+ D +  ++ LS+
Sbjct: 573 RINDFGAFIELEPGVDGLVHISKISFNRISHPSEVLSVGEEVKAKILEVDEENKRVSLSI 632

Query: 688 KVV 690
           K +
Sbjct: 633 KDI 635



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQI-RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           + IP  QI         K I  I+E      + ++   V  +   L E+    E    I 
Sbjct: 415 IFIPASQIDIKFTKDKSKYINQILEVKLINYSAEEHKKVIASRRVLLEVLKETEE-EKIW 473

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +   V  + + +V +  +FGAF+      DGL+H+SQ+S   V    D++K+G+ + VK+
Sbjct: 474 ESLNVGDVLEAEVKRFTNFGAFLDV-NGIDGLLHLSQISWNHVKNIEDILKKGEMIEVKI 532

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPI 698
           +  D +  K+ LS K +     + +
Sbjct: 533 IALDKENKKLSLSRKELLPKPWENV 557


>gi|161616544|ref|YP_001590509.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168232641|ref|ZP_02657699.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470413|ref|ZP_03076397.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|198242502|ref|YP_002217463.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|161365908|gb|ABX69676.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456777|gb|EDX45616.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197937018|gb|ACH74351.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205333149|gb|EDZ19913.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|326625244|gb|EGE31589.1| Protein yhgF [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 776

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|150017403|ref|YP_001309657.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium beijerinckii NCIMB 8052]
 gi|149903868|gb|ABR34701.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 635

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
              ++    I   ++ +V+  G  +   I+          D    K++ S    +  A+ 
Sbjct: 506 HLSQISWNHIK--KVSDVLKEGQIIDVKIIGL--------DKEAKKLSLSIKELV--AKP 553

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +    PE + I  G+VV++ DFGAFV      DGLVHIS++S  R+   S+V+K G+
Sbjct: 554 WDNAKEKYPEGS-IVLGKVVRLNDFGAFVELEPGVDGLVHISKISHNRIEHPSEVLKIGE 612

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            +  K+L  D +  +I LS+K V
Sbjct: 613 EIKAKILSVDEENKRISLSIKDV 635



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 19/250 (7%)

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
              V    +G   DG   I  +++S  ED L   D    G       +++    G +  +
Sbjct: 314 RDSVIVSLVGYKSDG--VIPFTELSAKEDPLTFADKLNIGDTINAKVIKLQNNDGYVVLS 371

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +    ++A +    I +E +        ++     R + +       R  I      I+
Sbjct: 372 RLEYEREEAFKELEKIYSEGTTF------EVNVKEAREKGIVADYKGARIFIPASQIDIK 425

Query: 576 GIVEQTG--------AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQ 626
              +++           ++      VK+ +S    +E ++    +       +  + KG+
Sbjct: 426 FTKDKSEYVGKKLEVKLIDFSLKNPVKLVASRRVLLEESKNSEDAKAWESFNLGDVIKGE 485

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V +  DFGAFV      DGL+H+SQ+S   + K SDV+KEG  + VK++  D +  K+ L
Sbjct: 486 VKRFTDFGAFVEV-NGIDGLLHLSQISWNHIKKVSDVLKEGQIIDVKIIGLDKEAKKLSL 544

Query: 686 SMKVVDQNTG 695
           S+K +     
Sbjct: 545 SIKELVAKPW 554


>gi|226952952|ref|ZP_03823416.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
 gi|226836273|gb|EEH68656.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
          Length = 560

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDAKGATVKLADDIEATLKTSEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440


>gi|169633382|ref|YP_001707118.1| 30S ribosomal protein S1 [Acinetobacter baumannii SDF]
 gi|169796132|ref|YP_001713925.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
 gi|213157134|ref|YP_002319179.1| ribosomal protein S1 [Acinetobacter baumannii AB0057]
 gi|215483586|ref|YP_002325807.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
 gi|239502184|ref|ZP_04661494.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB900]
 gi|260555182|ref|ZP_05827403.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606]
 gi|301345931|ref|ZP_07226672.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB056]
 gi|301510602|ref|ZP_07235839.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB058]
 gi|301597403|ref|ZP_07242411.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB059]
 gi|332851786|ref|ZP_08433711.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
 gi|332865834|ref|ZP_08436618.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
 gi|332872776|ref|ZP_08440742.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
 gi|169149059|emb|CAM86936.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
 gi|169152174|emb|CAP01077.1| 30S ribosomal protein S1 [Acinetobacter baumannii]
 gi|193077207|gb|ABO11999.2| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
 gi|213056294|gb|ACJ41196.1| ribosomal protein S1 [Acinetobacter baumannii AB0057]
 gi|213986936|gb|ACJ57235.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
 gi|260411724|gb|EEX05021.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606]
 gi|322508258|gb|ADX03712.1| rpsA [Acinetobacter baumannii 1656-2]
 gi|323517884|gb|ADX92265.1| 30S ribosomal protein S1 [Acinetobacter baumannii TCDC-AB0715]
 gi|332729793|gb|EGJ61128.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
 gi|332735046|gb|EGJ66131.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
 gi|332739073|gb|EGJ69934.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
          Length = 557

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440


>gi|167549292|ref|ZP_02343051.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442760|ref|YP_002042755.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194401423|gb|ACF61645.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|205325750|gb|EDZ13589.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 776

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18]
 gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18]
          Length = 484

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++ +G V  +++FG
Sbjct: 161 YIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 221 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279

Query: 694 TGK 696
             +
Sbjct: 280 PWQ 282



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + +I  G+V K++ FGAFV      +GLVHIS+L+T  V     VV  G
Sbjct: 279 DPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELATRHVDLAEQVVSVG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + V+VK++D D DR +I LS+K  ++
Sbjct: 339 EEVFVKIIDIDMDRRRISLSLKQANE 364



 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A  E +     V     +  GQVVK+      +      +G++   +LS +     S+V
Sbjct: 17  QAFLEAVEQTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEV 76

Query: 664 VKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
           V+ G  V   +L   D  G++ LS K   
Sbjct: 77  VELGSEVEALVLTKEDKEGRLILSKKRAQ 105


>gi|115315499|ref|YP_764222.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|169656779|ref|YP_001429450.2| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|115130398|gb|ABI83585.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|164551847|gb|ABU62494.2| ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 574

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 98  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 157

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   + ++           +E    K++   +  V    + + E   + +    +  + E
Sbjct: 158 PIKDVAHLEYKD-------IELKVVKIDTKRNNIVVSRKAVIEENN-SGDRDAMLEKISE 209

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 210 GS-VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 267

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 268 KEKQRISLGIKQLGEDPWLNIA 289



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 456 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 515

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 516 EGQEVEARIINIDAKKRSITLSIKAVDED 544



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 371 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 430

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 431 EVEAVLVSVNTDLERIALSMKQLSEDP 457



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 187 SRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 246

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 247 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVCAKLMGTVTNIT 306

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 307 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 366

Query: 690 VDQNTG 695
              N  
Sbjct: 367 CRPNPW 372


>gi|50085438|ref|YP_046948.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
 gi|49531414|emb|CAG69126.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
          Length = 557

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLPGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDAKGATVKLGDEIEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531


>gi|168184863|ref|ZP_02619527.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal
           protein S1 homolog [Clostridium botulinum Bf]
 gi|237795216|ref|YP_002862768.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Clostridium botulinum Ba4
           str. 657]
 gi|182672058|gb|EDT84019.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal
           protein S1 homolog [Clostridium botulinum Bf]
 gi|229260583|gb|ACQ51616.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase/ribosomal protein S1 [Clostridium botulinum
           Ba4 str. 657]
          Length = 644

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 16/221 (7%)

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDE     +  K    + G   + +       +   +  A +  +  ++ + + +   L 
Sbjct: 356 GDEIEAKIVRIK---NEDGYVVLSLKELHREKALKNLKEAFENKQTIKVIVKDAVDAGLI 412

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--KVIRGIVEQTGAKVNIDDDGTVKIASS 598
                +  F P   I     D +    G+     +I  I ++   K+       +K    
Sbjct: 413 CIYHGVRVFIPASHIELSHVDDLERYKGLELEVNIIEFIKDRYKTKIVGSRRNILKTIRD 472

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                    E I    +  E + + +G+V +  +FGAF+      DGL+H+S++S  RV 
Sbjct: 473 ---------EHIEETWNSLEKDTVVEGEVKRFTNFGAFIEI-NGVDGLLHVSEISWGRVE 522

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           K  D +K GD + V +LD D +  K+ LS+K + ++  K +
Sbjct: 523 KPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 563



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G VE+    + I D   V I        + A        +  +S+     +  I  G+V
Sbjct: 518 WGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSVEIKYPIGNIVLGKV 577

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I LS
Sbjct: 578 VRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRIALS 637

Query: 687 MKVVDQ 692
           +K V++
Sbjct: 638 IKDVEE 643



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +        V K+ KG +V + +   FV      +G++   +++ +  +   +  K GD 
Sbjct: 299 MNEKEQQIVVGKVVKGTIVSLNENELFVDLNYKSEGIIPKEEVTLDEESILKESFKVGDE 358

Query: 670 VWVKLLDF-DDRGKIKLSMKVV 690
           +  K++   ++ G + LS+K +
Sbjct: 359 IEAKIVRIKNEDGYVVLSLKEL 380


>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 273

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 101/255 (39%), Gaps = 24/255 (9%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D   R DGR    +R I  + G++    GS+     DT+    V  G R+  +  D
Sbjct: 29  DLVNDDGTRHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAV-YGPRQVVRRED 87

Query: 365 S-LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
             L+GT   DF     F   +  +  +    S  E     +  +A+ P +         +
Sbjct: 88  FKLTGTLTCDFK----FATFSCQKRQQHMQSSN-EKDLSLIVLQAMEPAVCLEKYPRAQI 142

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I   + ++ GS+  A +  +S AL  AG+ +   V G +   + +      L D + DE
Sbjct: 143 DIFITVLQNGGSALSAAITCASAALAAAGIEMYDVVVGCSTRQIGNT----CLVDPAYDE 198

Query: 484 DHLGHMDFKVAGTDSG---------ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           ++      K  G ++G         +  +   ++ G +   I++ ++     G + I   
Sbjct: 199 EYNS----KTGGKNNGSLCLGLMPSLNQVSAFIECGELETEILMQSIHSCVDGCMRIYPV 254

Query: 535 MSKVLSESRLQLGEF 549
           + + L++S   L + 
Sbjct: 255 VRQCLTKSIKSLQKH 269



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 24/215 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAV 70
           RP+ L  G I+  + G+      +T V   V   R +   +DF     LT +++  T++ 
Sbjct: 47  RPIFLRCGIIS-NAKGSAYIETKDTKVTCAVYGPRQVVRREDFKLTGTLTCDFKFATFSC 105

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            K      R++   + NE  +S ++ +++ P     K  + +  + I V+Q     S   
Sbjct: 106 QK------RQQHMQSSNEKDLSLIVLQAMEPAVCLEKYPRAQIDIFITVLQ--NGGSALS 157

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---------QGSLDLFVS 179
            ++  ASAAL  +G+     VVG     I    +++P  DE+          GSL L + 
Sbjct: 158 AAITCASAALAAAGIEMYDVVVGCSTRQIGNTCLVDPAYDEEYNSKTGGKNNGSLCLGLM 217

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214
            + + V    +E  +L  ++++ +I    + C  +
Sbjct: 218 PSLNQVSAF-IECGELETEILMQSIHSCVDGCMRI 251


>gi|283787959|ref|YP_003367824.1| transcription accessory protein [Citrobacter rodentium ICC168]
 gi|282951413|emb|CBG91112.1| putative transcription accessory protein [Citrobacter rodentium
           ICC168]
          Length = 772

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS L+ + V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLANKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 727


>gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
 gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
          Length = 518

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + ++  G
Sbjct: 283 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRQFARTHAIGQVVPG 337

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D DR +I 
Sbjct: 338 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRIS 397

Query: 685 LSMKVVDQNTG 695
           LS+K  ++ +G
Sbjct: 398 LSLKQANEASG 408



 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS         +I KG V  +++FGAFV 
Sbjct: 206 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVD 265

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 266 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWR 323



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 75  DIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDK 134

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 135 EGRLILSKKRAQ 146


>gi|56460463|ref|YP_155744.1| 30S ribosomal protein S1 [Idiomarina loihiensis L2TR]
 gi|56179473|gb|AAV82195.1| Ribosomal protein S1 [Idiomarina loihiensis L2TR]
          Length = 560

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 111/256 (43%), Gaps = 19/256 (7%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +   +  I   L+         S I  ++      + +V+  D  +  + +D    G  E
Sbjct: 24  VKGTIVAIEKDLILVDAGLKSESAIPAEQFRNAEGELEVSVGD--VVDVALDAVEDGFGE 81

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIPPDQIRNVIGMGGKV 573
            I+     + K  R     ++ K   ++   +G  + +V+    +    +R  +      
Sbjct: 82  TIL----SREKAKRYEAWLQLEKAHEDNATVIGIISGKVKGGFTVDLGGVRAFLPGSLVD 137

Query: 574 IRGIVEQTGAK--------VNIDDD-GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           +R + E T  +        + +D     V ++  ++ E E + E    + ++ E  ++ +
Sbjct: 138 VRPVRETTHLENKDLEFKVIKLDQKRNNVVVSRRAVIEKENSAEREELLENLQEGQEV-Q 196

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R ++
Sbjct: 197 GIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255

Query: 684 KLSMKVVDQNTGKPIV 699
            L +K + ++    I 
Sbjct: 256 SLGLKQLGEDPWADIA 271



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++ + +    E  L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIEKENSAEREELLENLQEGQEVQGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +        +    I +      
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWADIANRYPEGH 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
              G+V  + D+G FV      +GLVH+S++    +    S VV   DTV V +L+ D+ 
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVNLDDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGLKQCKPNPWEE 356



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 88/250 (35%), Gaps = 26/250 (10%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAI------PPDQIRNVIGMGGKVI 574
           + +       +  +    ++    +    T RV  +          + +  ++ +     
Sbjct: 252 RTRVSLGLKQLGEDPWADIANRYPEGHRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
                     VN+DD   V +          +                     +   G++
Sbjct: 312 TNKNVHPSKVVNLDDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKNHNKGEQVTGKI 371

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
             + DFG F+   G  DGLVH+S +S          D  K+G+ V   ++  D +R +I 
Sbjct: 372 KSITDFGIFIGLDGGIDGLVHLSDISWNATGEEAVRDY-KKGEEVTAVVMQVDAERERIS 430

Query: 685 LSMKVVDQNT 694
           L +K ++++ 
Sbjct: 431 LGIKQLEEDP 440



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V +V   GA V    + +G V  + +S +RV   S  +  GD++  + +  D + 
Sbjct: 453 IVTGTVTEVDAKGAKVELAESVEGYVRAADISRDRVEDASTELSVGDSIEARFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS++  D+   K  V
Sbjct: 513 RTLSLSIRAKDEVEEKEAV 531


>gi|85060299|ref|YP_456001.1| hypothetical protein SG2321 [Sodalis glossinidius str. 'morsitans']
 gi|84780819|dbj|BAE75596.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 779

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS LS   +     VVK GD V VK+++ D  
Sbjct: 652 MVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFIDDPHKVVKAGDIVKVKVMEVDIA 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSM+ +D+  G+
Sbjct: 712 RKRIALSMR-LDERPGE 727


>gi|309789714|ref|ZP_07684294.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
 gi|308228200|gb|EFO81848.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
          Length = 488

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID DGT    S         R M        E  +I +G V  +  FGAFV     RD
Sbjct: 260 LEIDPDGTRISLSLR-------RAMRSQRMQGLEPGQILEGTVSGLAPFGAFVDIGVGRD 312

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GLVHIS LS+ RV K  DVVK GD V VK+L+ D +  +I L+M++ D    
Sbjct: 313 GLVHISALSSSRVGKVEDVVKVGDKVTVKVLEVDQQSKRISLTMRLDDSEPA 364



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
               E+ R      +V  + +G++     FGAF      +DGL+H+S+L+  RV K  D 
Sbjct: 189 PKRAEVDRDRLSSLKVGDVVEGKITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDA 248

Query: 664 VKEGDTVWVKLLDFDDRG-KIKLSMK 688
           VK GD    K+L+ D  G +I LS++
Sbjct: 249 VKVGDQFNFKVLEIDPDGTRISLSLR 274



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G+V  +  +G FV     RDGLVHIS++S  R+   SD+V+ GDTV V++   D D  
Sbjct: 109 LEGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVKSVDPDAR 168

Query: 682 KIKLSMKVVDQNTG 695
           +I L+M+  +++ G
Sbjct: 169 RISLTMRSQERSEG 182


>gi|295093253|emb|CBK82344.1| Transcriptional accessory protein [Coprococcus sp. ART55/1]
          Length = 714

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDV 616
              ++   +G G   +  I+++             K A     E+     R  +  + D+
Sbjct: 592 NIKKLAEELGTGTITLNDIIKELE-----------KPARDPRDEMPKPILRGDVLEMKDL 640

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   I KG V  V+DFGAFV     +DGLVHIS++S + +    DVV  GD V VK++ 
Sbjct: 641 TEG-MILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSDKFIKHPLDVVSVGDIVQVKVIG 699

Query: 677 FD-DRGKIKLSMKVV 690
            D  + +I+LSMK +
Sbjct: 700 IDLAKKRIQLSMKGI 714


>gi|294650534|ref|ZP_06727891.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
 gi|292823531|gb|EFF82377.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
          Length = 560

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDAKGATVKLADDIEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440


>gi|260880822|ref|ZP_05893177.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
 gi|308093620|gb|EFO43315.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
          Length = 507

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 92/250 (36%), Gaps = 26/250 (10%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I   ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEIQVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAI------PPDQIRNVIGMGGKVI 574
           + +       +  +    +++   +  + T RV  +          + +  ++ +     
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQV 627
                     VN+ D+  V +               +      +S  +         G++
Sbjct: 312 TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKI 371

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIK 684
             + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I 
Sbjct: 372 KSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVLAVDAERERIS 430

Query: 685 LSMKVVDQNT 694
           L +K ++ + 
Sbjct: 431 LGIKQMENDP 440



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    V  V   GA V      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVADNKKGTLVNATVTAVDAKGATVEIAEGVEGYIRASEVSRDRVEDASLILSAG 498

Query: 668 DTVWVK 673
           D V  K
Sbjct: 499 DVVEAK 504


>gi|62182006|ref|YP_218423.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129639|gb|AAX67342.1| paral putative RNase R [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322716494|gb|EFZ08065.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 776

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|182418532|ref|ZP_02949820.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum 5521]
 gi|237667880|ref|ZP_04527864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377624|gb|EDT75172.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum 5521]
 gi|237656228|gb|EEP53784.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 634

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           +K+ +S  A +E A+  + +       +N + KG+V +  DFGAFV      DGL+H+SQ
Sbjct: 450 IKVVASRRALLEKAKNEMETKAWESFNLNDVVKGEVKRFTDFGAFVEI-NGVDGLLHLSQ 508

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +S   V K  DV+K G  V VK++  D +  K+ LSMK +       +
Sbjct: 509 ISWNHVKKIEDVLKIGQIVDVKIIGLDKETKKLSLSMKELMAKPWDNV 556



 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
              +I +V+ +G  V   I+          D  T K++ S    +    + ++       
Sbjct: 513 HVKKIEDVLKIGQIVDVKIIGL--------DKETKKLSLSMKELMAKPWDNVKEKYPE-- 562

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + I  G+VV++  FGAFV      DGLVHIS++S ER+   + V+  G  +  K+L  D
Sbjct: 563 -DSIVLGKVVRLSKFGAFVELEPGVDGLVHISKISHERIEDPAQVLTIGQEIKAKILSVD 621

Query: 679 -DRGKIKLSMKVV 690
            +  +I LS+K +
Sbjct: 622 EENKRISLSIKDI 634


>gi|260550112|ref|ZP_05824326.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
 gi|260406867|gb|EEX00346.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
          Length = 557

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440


>gi|77414872|ref|ZP_00790982.1| ribosomal protein S1 [Streptococcus agalactiae 515]
 gi|77159073|gb|EAO70274.1| ribosomal protein S1 [Streptococcus agalactiae 515]
          Length = 339

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 207 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQ 266

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ + D  ++ LSMK +++   +
Sbjct: 267 EVTVKVLEVNSDAERVSLSMKALEERPAQ 295



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +E  A    + +    EV  +  G+V ++  F
Sbjct: 87  KFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSF 146

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 147 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTP 205

Query: 693 NTG 695
              
Sbjct: 206 GPW 208


>gi|269140622|ref|YP_003297323.1| RNA binding S1 domain protein [Edwardsiella tarda EIB202]
 gi|267986283|gb|ACY86112.1| RNA binding S1 domain protein [Edwardsiella tarda EIB202]
 gi|304560409|gb|ADM43073.1| YhgF [Edwardsiella tarda FL6-60]
          Length = 780

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D
Sbjct: 649 VGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLAHKFVDDPHKVVKAGDIVKVKVLEVD 708

Query: 679 D-RGKIKLSMKVVDQNTGK 696
             R +I L+M+ +D+  G+
Sbjct: 709 QARRRIALTMR-LDEQPGE 726


>gi|238788975|ref|ZP_04632765.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC
           33641]
 gi|238723002|gb|EEQ14652.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC
           33641]
          Length = 790

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEIDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|133870|sp|P14128|RS1_PROSP RecName: Full=30S ribosomal protein S1
 gi|897799|emb|CAA26596.1| unnamed protein product [Providencia sp.]
          Length = 378

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+   + GK +   V +   K N      V ++  ++ E E++ E  + + ++ 
Sbjct: 31  VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESESSAERDQLLENLQ 85

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F
Sbjct: 86  EGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKF 143

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R ++ L +K + ++    I 
Sbjct: 144 DRERTRVSLGLKQLGEDPWVAIA 166



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 7   INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDQKRN 59

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G+ +         G+VK+  D+    D+
Sbjct: 60  NV-VVSRRAVIESESSAERDQL----LENLQEGMEVK--------GIVKNLTDYGAFVDL 106

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 107 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRERTRVSLGLKQLGEDP 161

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 162 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 221

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +   +        +G++  + DFG F+ 
Sbjct: 222 VVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRVEGKIKSITDFGIFIG 277

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 278 LEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 335



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 117 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 176

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 236

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 237 ISLGLKQCKSNPWQ 250


>gi|293608243|ref|ZP_06690546.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828816|gb|EFF87178.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122025|gb|ADY81548.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus PHEA-2]
          Length = 557

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSIKAKDEAEEKEAV 531



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440


>gi|322411908|gb|EFY02816.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 401

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIE-AAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    IE AA+E    +        +  G V ++  F
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVIEEAAKEARTEVFSKLSEGAVVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|300853471|ref|YP_003778455.1| transcriptional accessory protein [Clostridium ljungdahlii DSM
           13528]
 gi|300433586|gb|ADK13353.1| transcriptional accessory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 721

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 101/265 (38%), Gaps = 23/265 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           I E   +S    +  ++ +L+     I+  +A   +   ++   F    ++   +     
Sbjct: 477 IVEDCVNSVGVDLNIATPSLLSYISGINTAIASNIVAYREENGKFKNRKELLKVKRLGAK 536

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG       +++      +    +      A +  L I+     +      +L  
Sbjct: 537 AFEQCAG------FLRVMESGEPLDNTSVHPESYDAAKELLKIIG--YNMEDLKNGELSG 588

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
              RV+ + I    +   + +G   ++ I+++             K       E+     
Sbjct: 589 IDNRVDKIGIDV--LSEKLNVGEPTLKDIIKEIK-----------KPGRDPREELPKPIL 635

Query: 609 MI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                  +  +   +  G V  V DFGAFV     +DGLVHISQLS + V    DVV+ G
Sbjct: 636 KTGIIDINQLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVQVG 695

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691
           D V V +L+ D+ R +I LSMK  D
Sbjct: 696 DIVQVTVLEVDEKRKRISLSMKSSD 720


>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
           vulgare]
          Length = 240

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 31/243 (12%)

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
            +  +R  S     L+R HGS+ + +GDT  ++    G R       +  G       + 
Sbjct: 12  KANQLRAYSCTRNPLERAHGSARWAQGDT-VVLAAVYGPR-----PGTRKGENPEKASLE 65

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
             + P       + G   R+E  +    +R +  +   T     T  I+ ++   DGS  
Sbjct: 66  VVWKP-------KTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLL 118

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE-------------D 484
              +  S  AL+ AG+P+      I  G++ DG    ++ D S  E             +
Sbjct: 119 PCAINASCAALVFAGIPMKHLAVAIGCGVLPDGS---VILDTSKAEEQQLKSFAHLVFPN 175

Query: 485 HLGHMDFKVAGTDSGITA--MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
               +D K      G +   +   +  G +SE+     +++       I + M   L + 
Sbjct: 176 SSLSVDVKEPQQKDGQSERGLITSITHGVMSEDDYFNCIERGLAASARISDFMRTTLQKH 235

Query: 543 RLQ 545
             +
Sbjct: 236 TPE 238



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 30/213 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G+TVVLA V   R      +  +   L V ++ +T  +G+           
Sbjct: 29  AHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASLEVVWKPKTGQIGR----------- 77

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             E E  ++  + R+++   L +      T +I+ VM  D    P   ++ A+ AAL+ +
Sbjct: 78  -QEKEYEMT--LKRTLQSICLLTVHPNTTTSIILQVMGDDGSLLPC--AINASCAALVFA 132

Query: 142 GLPFEGPVVGAQVD---YINGQYVLNPRLDEDQ--GSL-DLFVSGTQDAVLMVE-LEANQ 194
           G+P +       +      +G  +L+    E+Q   S   L    +  +V + E  + + 
Sbjct: 133 GIPMKHL--AVAIGCGVLPDGSVILDTSKAEEQQLKSFAHLVFPNSSLSVDVKEPQQKDG 190

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
            SE  ++ +I  G          I +     A+
Sbjct: 191 QSERGLITSITHGVMSEDDYFNCIERGLAASAR 223


>gi|24379626|ref|NP_721581.1| 30S ribosomal protein S1 [Streptococcus mutans UA159]
 gi|290580374|ref|YP_003484766.1| putative ribosomal protein S1 [Streptococcus mutans NN2025]
 gi|24377577|gb|AAN58887.1|AE014956_8 putative ribosomal protein S1; sequence specific DNA-binding
           protein [Streptococcus mutans UA159]
 gi|254997273|dbj|BAH87874.1| putative ribosomal protein S1 [Streptococcus mutans NN2025]
          Length = 399

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   KV   D+   +++ S  A           +        + +G+V ++ DFGAFV 
Sbjct: 241 EEIQVKVLAIDEEAGRVSLSLKATTP---GPWDGVEQKLAAGDVIEGKVKRLTDFGAFVE 297

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
                DGLVHISQ+S +RV    DV+  G  V VK+LD +    ++ LS+K +++   + 
Sbjct: 298 VLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLDVNTADERVSLSIKALEERPAQD 357



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + +Q  AK+  ID      I S       AA +    +     V  I  G V ++  F
Sbjct: 148 KFVGQQFEAKIKEIDPSENRFILSRRDVVEAAAAKAREEVFSRLAVGDIVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVHI++LS ER      VV  G+ + VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHITELSHERNVSPKSVVTVGEEIQVKVLAIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|319651364|ref|ZP_08005493.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
 gi|317396895|gb|EFV77604.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
          Length = 379

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   D    ++  S  A IE  +   +       +  ++  G V ++ DFGAFV   G 
Sbjct: 151 KIVELDKDKNRLILSHRAVIEEEKGKQKHQVLESLQAGQVLDGTVQRITDFGAFVDI-GG 209

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            DGLVHISQLS E V K SDVV+EG  V VK+L  D D  +I LS+K         I
Sbjct: 210 IDGLVHISQLSYEHVEKPSDVVEEGQKVKVKVLSVDRDNERISLSIKETLPGPWDNI 266



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I++        +G V +++ +GAFV      +GLVHISQ++ + +    +V+ EG 
Sbjct: 262 PWDNISEKAPKGSTLEGTVKRLVSYGAFVEVFPGVEGLVHISQIAHKHIGTPHEVLSEGQ 321

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
            + VK+LD +++  ++ LS+K + +   + +
Sbjct: 322 EIKVKVLDVNEQDQRLSLSIKDLLEKEQEEV 352



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           EM +      EV    KGQV KV +    V    ++ DG++ IS+LS+  + K SD V E
Sbjct: 4   EMNQVEVKNFEVGDKVKGQVTKVEEKQVIVDLADSKLDGIIPISELSSLHIEKASDAVSE 63

Query: 667 GD 668
           GD
Sbjct: 64  GD 65


>gi|299770392|ref|YP_003732418.1| 30S ribosomal protein S1 [Acinetobacter sp. DR1]
 gi|298700480|gb|ADI91045.1| 30S ribosomal protein S1 [Acinetobacter sp. DR1]
          Length = 557

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSVKAKDEAEEKEAV 531


>gi|238544547|dbj|BAH60899.1| putative ribosomal protein S1 [Desulfotignum balticum]
          Length = 486

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P  ++     +   + +G   + +    E+ G  + I         S    EI+AA
Sbjct: 140 RAFCPVSQMDVNYVETPEDFVGQTLRFLVTRYEENGRNIVI------SRRSLLNEEIKAA 193

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+   +           +G+V+++M FGAF+      +G+ HIS+LS  RV K  +VVK 
Sbjct: 194 RQAFFADVSQ---GDTLQGKVIRLMPFGAFIELAPGVEGMAHISELSWSRVEKPDEVVKP 250

Query: 667 GDTVWVKLLDFDDRG-----KIKLSMKVVDQNTGKPI 698
           GDTV VKLL    +      KI LS+K    +  + +
Sbjct: 251 GDTVLVKLLSITPQDGQDLPKISLSLKQTATDPWESV 287



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 42/317 (13%)

Query: 410 HPVLPQTAQFPY------TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
             +L +  +FP+      TL +VS + ES+   S A      +AL++  V    PV G  
Sbjct: 66  QELLDENGEFPFQAGDVLTLYVVS-LNESEIILSKAISGAGKVALLEDAVQNRTPVEGKV 124

Query: 464 MGLVKDGDDFIIL----------SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
             ++K G    IL           D++  E      DF        +T  + + +   IS
Sbjct: 125 TEVIKGGFSVDILGKRAFCPVSQMDVNYVETPE---DFVGQTLRFLVTRYEENGRNIVIS 181

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF------TPRVEIMA-I------PP 560
              ++    +A R            L    ++L  F       P VE MA I        
Sbjct: 182 RRSLLNEEIKAARQAFFADVSQGDTLQGKVIRLMPFGAFIELAPGVEGMAHISELSWSRV 241

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           ++   V+  G  V+  +       ++I       +   SL+  + A +   S+    +  
Sbjct: 242 EKPDEVVKPGDTVLVKL-------LSITPQDGQDLPKISLSLKQTATDPWESVDAAFKPG 294

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD- 678
               G+V+++ +FGAFV      DGLVHIS++S   RV +  +VV++G  V V +   D 
Sbjct: 295 DQVSGKVMRITNFGAFVEIAPGVDGLVHISEMSHTRRVTRPEEVVEKGQDVQVVIKSIDM 354

Query: 679 DRGKIKLSMKVVDQNTG 695
           D  ++ LS+K    +  
Sbjct: 355 DAKRVSLSIKDALGDPW 371



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 16/146 (10%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKV-----NIDDDGTVKIASSSLAEIEAAR--- 607
           M I        I  G   +  I E +  +       + + G          +++A R   
Sbjct: 302 MRITNFGAFVEIAPGVDGLVHISEMSHTRRVTRPEEVVEKGQDVQVVIKSIDMDAKRVSL 361

Query: 608 -------EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                  +    I+   +   I +G++ K   FG F+       GL+ +S L     AK 
Sbjct: 362 SIKDALGDPWTGISVRYKPGDIMEGRLEKRETFGLFIGLEPGVTGLMPVSVLRNAADAKL 421

Query: 661 SDVVKEGDTVWVKLLDFDDRG-KIKL 685
            D +K GD V V +   D+   +I L
Sbjct: 422 YDALKPGDAVQVLVQQVDEENRRISL 447


>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1118]
          Length = 403

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           ++   +     + ID+D      S    E           T       +++G+V  + +F
Sbjct: 241 LKAGQDVKVKVIGIDNDRHRISLSIKQTEPS----PFEQATANLNEGDVFEGEVKSLTNF 296

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
           GAFV       GLVH+S++S + V K SDV+K G TV VK+L+ D    +I LS+K 
Sbjct: 297 GAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKA 353



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKGQVVKVMDFG 634
            I +    K+   D    ++  S    +E  RE     +     V  + +G+V ++ +FG
Sbjct: 153 YIGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFG 212

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AF+   G  DGLVHIS++S + V K SD +K G  V VK++  D DR +I LS+K  + +
Sbjct: 213 AFIDV-GGVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPS 271

Query: 694 T 694
            
Sbjct: 272 P 272


>gi|90021782|ref|YP_527609.1| 30S ribosomal protein S1 [Saccharophagus degradans 2-40]
 gi|89951382|gb|ABD81397.1| SSU ribosomal protein S1P [Saccharophagus degradans 2-40]
          Length = 560

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 89/215 (41%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      S  ++  A    +     I  ++    +    
Sbjct: 66  DEVQVALESVEDGFGETRLSREKAKRAESWKVLEAAHDAEEVITGVINGKVKGGFTVDVA 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R    + GK +   V +   + N      V ++  ++ E  
Sbjct: 126 GIRAFLPGSL---VDVRPVRETTHLEGKELEFKVIKLDQRRN-----NVVVSRRAVMEQA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSEEREELLANLQEGMAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 AVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWSAI 270



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT         K ++  + D+G F       +GLVH+S++    +    S VV  
Sbjct: 265 DPWSAITQRYPEGAKVKARITNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNIHPSKVVSL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D +R +I L +K   +N  
Sbjct: 325 GDEVEVMILDIDEERRRISLGIKQCQENPW 354



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  ++      ++ID++           +         + ++  
Sbjct: 316 IHPSKVVSL----GDEVEVMI------LDIDEERRRISLGIKQCQEN----PWDAFSNQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S      +     K+GD +   +L 
Sbjct: 362 AKGDKISGKIKSITDFGIFIGLDGGIDGLVHLSDISWNEAGEEAVRKFKKGDEIETVVLA 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K +D++ 
Sbjct: 422 IDPERERISLGVKQLDEDP 440



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V +V    A +       G +  S++S ++V    +V+KEG
Sbjct: 439 DPFSAYVAENDKGTIVTGTVKEVDAKEAVILLADDITGTLKASEISRDKVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V  K+ + D + + I LS+K  D
Sbjct: 499 DEVEAKITNVDRKNRAIILSVKAKD 523


>gi|329122057|ref|ZP_08250665.1| S1 RNA-binding domain protein [Dialister micraerophilus DSM 19965]
 gi|327466864|gb|EGF12380.1| S1 RNA-binding domain protein [Dialister micraerophilus DSM 19965]
          Length = 171

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  ++ FGAFV     + GLVHIS+++ E V   ++ +K GD V VK++  
Sbjct: 4   EVGSIVEGKVSGIVKFGAFVDLGEGKTGLVHISEIAHEYVEDVNEFLKVGDEVKVKIISI 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D+  K  LS+K    N 
Sbjct: 64  DNHNKFALSIKQAQSNP 80


>gi|313891674|ref|ZP_07825281.1| S1 RNA binding domain protein [Dialister microaerophilus UPII
           345-E]
 gi|313119952|gb|EFR43137.1| S1 RNA binding domain protein [Dialister microaerophilus UPII
           345-E]
          Length = 171

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  ++ FGAFV     + GLVHIS+++ E V   ++ +K GD V VK++  
Sbjct: 4   EVGSIVEGKVSGIVKFGAFVDLGEGKTGLVHISEIAHEYVEDVNEFLKVGDEVKVKIISI 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D+  K  LS+K    N 
Sbjct: 64  DNHNKFALSIKQAQSNP 80


>gi|291545887|emb|CBL18995.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5]
          Length = 358

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQVVK 629
            G VE      N+ D  TV I   +  +I  + +       +          + KG+V +
Sbjct: 227 WGRVENPKKVFNVGDKVTVLIKDINGDKIALSLKFPEENPWLTAAEDFAVGNVVKGKVAR 286

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+ +  KI LSMK
Sbjct: 287 MTDFGAFVELAPGVDALLHVSQISREHVAKPSDVLSIGQEIEAKVVDFNGEDRKISLSMK 346

Query: 689 VVDQNTGK 696
            ++ N+ +
Sbjct: 347 ALEDNSAE 354



 Score = 44.1 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I +G V+ V D    ++     DG++  ++ + +     +DVVK G
Sbjct: 8   QMLEDSVKTIRNGEIVQGTVIDVKDDEIILNIGYKADGIITKNEYTNDSSVVLTDVVKPG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +    G
Sbjct: 68  DTMEAKVLKVNDGEGQVTLTYKRLAAEKG 96


>gi|24983268|gb|AAN67392.1|AE016365_7 ribosomal protein S1 [Pseudomonas putida KT2440]
          Length = 576

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 84  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 143

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 144 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 195

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 196 NSAEREALLETLQEGQQV-KGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEIV 253

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD V V++L FD +R ++ L +K + ++    I
Sbjct: 254 NVGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAI 288



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 177 LDQKRNNVVVSRRSVLEAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGLL 236

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNK 621
               +    ++     VN+ D+  V++               +   +   +IT       
Sbjct: 237 HITDMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAITARYPEGT 296

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             + +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 297 RVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 356

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 357 RRRISLGIKQCKSNPWED 374



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V +V   GA V      +  +  S++S +RV    +V+KEG+ +  K++  D + 
Sbjct: 471 IVKGIVKEVDAKGAIVTLADDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKS 530

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D    +  +
Sbjct: 531 RVISLSIKSKDDAEEREAI 549



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 334 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 379

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S     +   V   K+GD +   +L
Sbjct: 380 NKGDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGE-EAVRRFKKGDELETVIL 438

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 439 SVDPERERISLGIKQLEDDP 458


>gi|148263533|ref|YP_001230239.1| 30S ribosomal protein S1 [Geobacter uraniireducens Rf4]
 gi|146397033|gb|ABQ25666.1| SSU ribosomal protein S1P [Geobacter uraniireducens Rf4]
          Length = 584

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           I  GG + R I E    KV   +     I  S    +E  R+  R+ T        +  G
Sbjct: 163 IRPGGNLDRFIGETCKFKVLKMNRKRGNIVLSRRVLLEEERDKARTTTLATLSEGDVVDG 222

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+H++ +S  R+   S+ VK GDT+ VK+L +D ++GKI 
Sbjct: 223 IVKNIADYGAFVDL-GGVDGLLHVTDMSWGRLNHPSEAVKVGDTIKVKVLKYDREKGKIS 281

Query: 685 LSMKVVDQNTG 695
           L +K    +  
Sbjct: 282 LGLKQTMADPW 292



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++    ++ +  +G+VV + D+GAF+      +GLVHIS++S  +RV   S+++  
Sbjct: 290 DPWLNVETKYQIGERVQGRVVSLTDYGAFIALEEGVEGLVHISEMSWTKRVRHPSELLTV 349

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V   +L  D    +I L +K  + N  
Sbjct: 350 GDNVEALILGVDTSNRRISLGLKQTEVNPW 379



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P   KI +GQ+  + DFG F+      DGLVH+S +S  +R+    ++  +G TV   +L
Sbjct: 387 PVGTKI-EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTKRIKHPGELYSKGQTVQAVVL 445

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
           + D D  ++ L +K +  +    I
Sbjct: 446 NIDADNERLSLGIKQLTPDPWDEI 469



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I    +     KG+V  + DFG F+      +GLVHIS+LS E++A T D    G
Sbjct: 464 DPWDEIPSKFKPGTRIKGKVTSITDFGVFMEIEEGIEGLVHISELSQEKLASTKDFAAVG 523

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691
           D +   +L+ D    KI LS+K + 
Sbjct: 524 DELDAVVLNVDTVEKKIALSIKSLQ 548


>gi|70997647|ref|XP_753563.1| RNA helicase-like splicing factor (HRH1) [Aspergillus fumigatus
           Af293]
 gi|66851199|gb|EAL91525.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           fumigatus Af293]
 gi|159126706|gb|EDP51822.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           fumigatus A1163]
          Length = 1230

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           +     + + P + KIY G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD
Sbjct: 249 KPPPVELDEQPILYKIYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSD 308

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++      +I LSMK VDQ TG  +V
Sbjct: 309 LVSRGQPVKVKVISIQGS-RIGLSMKEVDQVTGLDLV 344


>gi|218702152|ref|YP_002409781.1| transcriptional accessory protein [Escherichia coli IAI39]
 gi|218372138|emb|CAR20000.1| transcriptional accessory protein [Escherichia coli IAI39]
          Length = 773

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L  D  R +I L+M+ +D+  G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLKVDLQRKRIALTMR-LDEQPGE 727


>gi|161616815|ref|YP_001590779.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366179|gb|ABX69947.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 174

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 380 FLPCATGEVSRM----GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
            LP AT   +      G    R +   RL  RA+   +       +T+ +  ++ ++DG 
Sbjct: 1   MLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG 60

Query: 436 SSMATVCGSSLALMD-----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  A++ G+ +AL D              P+   VA +++G+V        + D+   ED
Sbjct: 61  TRTASITGACVALADALNKLVANGKLKTNPMKGMVAAVSVGIVNGE----AICDLEYVED 116

Query: 485 HLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                D  V  T+ G I  +Q   +    S   ++  L  A+ G   I+      
Sbjct: 117 SAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAA 171



 Score = 41.8 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
           + +     + I R+I R++R         E  +    +V+Q D        S+  A  AL
Sbjct: 16  KGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG--TRTASITGACVAL 73

Query: 139 M-----------LSGLPFEGPVVGAQVDYINGQYVLNPRL-DEDQGSLDLFVSGTQDA-V 185
                       L   P +G V    V  +NG+ + +    ++     D+ V  T+D  +
Sbjct: 74  ADALNKLVANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRI 133

Query: 186 LMVELEAN 193
           + V+  A 
Sbjct: 134 IEVQGTAE 141


>gi|254555611|ref|YP_003062028.1| hypothetical protein JDM1_0442 [Lactobacillus plantarum JDM1]
 gi|300768961|ref|ZP_07078852.1| S1 RNA binding domain protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308179641|ref|YP_003923769.1| hypothetical protein LPST_C0452 [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|254044538|gb|ACT61331.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
 gi|300493482|gb|EFK28659.1| S1 RNA binding domain protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045132|gb|ADN97675.1| hypothetical protein LPST_C0452 [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 179

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV+    + GLVHIS++S   V    DV+  GD V VK+L  
Sbjct: 4   EVGTKVTGKVSGITNFGAFVNLGNNQTGLVHISEVSDGFVKDIHDVLSVGDDVTVKVLSV 63

Query: 678 DDRGKIKLS-MKVVDQNTGK 696
            D GKI LS  K VD+  G+
Sbjct: 64  GDDGKIGLSIRKAVDKPQGE 83


>gi|28377428|ref|NP_784320.1| hypothetical protein lp_0543 [Lactobacillus plantarum WCFS1]
 gi|28270260|emb|CAD63161.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 179

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV+    + GLVHIS++S   V    DV+  GD V VK+L  
Sbjct: 4   EVGTKVTGKVSGITNFGAFVNLGNNQTGLVHISEVSDGFVKDIHDVLSVGDDVTVKVLSV 63

Query: 678 DDRGKIKLS-MKVVDQNTGK 696
            D GKI LS  K VD+  G+
Sbjct: 64  GDDGKIGLSIRKAVDKPQGE 83


>gi|325094232|gb|EGC47542.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H88]
          Length = 1226

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 7/114 (6%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLV 647
           G  +       E    R     + D P + KIY G+V  + DFGAFV+  G +   DGLV
Sbjct: 228 GENRRRRDHDDEEFFKRPPTPELDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLV 287

Query: 648 HISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
           H+S + +  RV   SD+V +G  V VK++    +G ++ LSMK VDQ TG+ + 
Sbjct: 288 HVSAMQAGARVNHPSDLVSKGQPVKVKVITI--QGIRVGLSMKEVDQGTGRDLA 339


>gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
 gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
          Length = 337

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 14/234 (5%)

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTD----SGITAMQMDMKIGGISENIMVMAL 521
            V + ++     D +  E+     +            G   + M      ++ + +   L
Sbjct: 87  GVIEKENLSNDPDFNMKEEIHVGDEITATVLKTDDGEGNIVLSMKEANDKMAWDRLRTML 146

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           ++     + I   ++         +  F P   + A+  + + + +G    V        
Sbjct: 147 EERTVVPVKITEIVNSGAIAQIEGMRGFIPASRLDAVYVENLEDFLGRTIDV-------- 198

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
              +  D++    + S   A  E  +E  +      EV  I  G V  +  +GAF+    
Sbjct: 199 -TVITADEEHNKLVLSGREAAREKLQEEKKRRIAKCEVGVIMDGTVDSIKPYGAFISLEN 257

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              GLVHISQ+S++R+   S V+KEG  V VK++   D  KI LSMK V+ N  
Sbjct: 258 GLSGLVHISQISSKRIPHPSAVLKEGQKVTVKIISTAD-NKISLSMKAVEANEA 310



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++     + +         I  G V+ V +    +      +G++    LS +     
Sbjct: 43  ESMDDYAAELEASFKKVREGDILTGTVIGVFESHVLLDLKYYAEGVIEKENLSNDPDFNM 102

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
            + +  GD +   +L  DD  G I LSMK  +
Sbjct: 103 KEEIHVGDEITATVLKTDDGEGNIVLSMKEAN 134


>gi|301156123|emb|CBW15594.1| 30S ribosomal subunit protein S1 [Haemophilus parainfluenzae T3T1]
          Length = 549

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +S  V  I  G V         S I   E  +  G ++ KV  T +          
Sbjct: 20  QGSIVSGTVVAIQKGFVLVDAGLKSESAIPVAEFQNAQGELEVKVGDTVNVALDAVEDGY 79

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQILENLAE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWVAIA 271



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQILENLAEGSEVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKPNPW 354



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 129/366 (35%), Gaps = 56/366 (15%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E    +  ++G  +  F +  N    FLP +  +         RE  H  L  + +   
Sbjct: 103 EEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRP-----AREADH--LLGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     +    L  +  G  +         G+VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESENSQEREQI----LENLAEGSEVK--------GIVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        ++  ++     + +   
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEVTVKVLKFDKDRTRVSL 257

Query: 529 --LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               +  +    ++E+     + T +V  +      +  + G+ G V   + E      N
Sbjct: 258 GLKQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLV--HVSEMDWTNKN 315

Query: 587 IDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVM 631
           I     V +  +    +    E  R                  +         G++  + 
Sbjct: 316 IHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIKSIT 375

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DFG F+   G  DGLVH+S +S   VA    V   K+GD V   +L  D  + +I L +K
Sbjct: 376 DFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVRNYKKGDEVSAVVLAVDAVKERISLGIK 434

Query: 689 VVDQNT 694
            ++ + 
Sbjct: 435 QLEDDP 440



 Score = 44.1 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVANTKKGAVVSATVVEADAKGAKVELAGGVEGYIRAADLTNE--------VAAG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVKAKDQ 516


>gi|241667467|ref|ZP_04755045.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876014|ref|ZP_05248724.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842035|gb|EET20449.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 556

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++V  +  K I   V +   K N      + ++  ++ E   + +    +  + E
Sbjct: 140 P---IKDVAHLEDKDIELKVVKIDTKRN-----NIVVSRKAVIEENNSGDRDAMLEKISE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + +G V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 192 GS-VLQGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     + KG V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVKGNVTKVQDNGAVVMLDADNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSIALSIKAVDED 526



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISEGSVLQGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRANPW 354



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWNEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 DVEAVLVSVNTDLERIALSMKQLSEDP 439


>gi|127514562|ref|YP_001095759.1| RNA-binding S1 domain-containing protein [Shewanella loihica PV-4]
 gi|126639857|gb|ABO25500.1| RNA binding S1 domain protein [Shewanella loihica PV-4]
          Length = 787

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 576 GIVEQTG-AKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
            + E+ G   + +I  +              A  +         +V  I +G V  V +F
Sbjct: 606 FVTEEFGLPTIEDILSELDKPGRDPRGEFKTAVFKEGVEEIKDLKVEMILEGVVTNVTNF 665

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV     +DGLVHIS L+ + V+    VVK GD V VK+++ D +R +I L+M+ +D+
Sbjct: 666 GAFVDIGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEVDAERKRISLTMR-LDE 724

Query: 693 NTGK 696
             G+
Sbjct: 725 KPGE 728


>gi|311895436|dbj|BAJ27844.1| putative ribosomal protein S1 [Kitasatospora setae KM-6054]
          Length = 496

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 572 KVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           +V+    E T   +++D D   V ++  +  E     +  +      +++++  G+V K+
Sbjct: 254 EVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQISQVVPGKVTKL 308

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           + FGAFV      +GLVHIS+L+   V     VV+ GD ++VK++D D +R +I LS+K 
Sbjct: 309 VPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKVIDIDLERRRISLSLKQ 368

Query: 690 VDQNTGKP 697
            +++ G  
Sbjct: 369 ANESLGAD 376



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 171 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 230

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   ++VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 DL-GGVDGLVHVSELSWKHIDHPNEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 289



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T  +V I+D G             AA +      +      I +G +VKV      +   
Sbjct: 11  TTPQVAINDIG-------DAEAFLAAIDETIKYFND---GDIVEGIIVKVDRDEVLLDIG 60

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +      +VVK GD +   +L   D  G++ LS K   
Sbjct: 61  YKTEGVIPSRELSIKHDVDPHEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 112


>gi|212638920|ref|YP_002315440.1| 30S ribosomal protein S1 [Anoxybacillus flavithermus WK1]
 gi|212560400|gb|ACJ33455.1| Ribosomal protein S1 [Anoxybacillus flavithermus WK1]
          Length = 386

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +  D + +     G+ +   V +        +   V ++  ++ E E A +   ++  + 
Sbjct: 139 VEKDFVEDFTDYKGRTLTVKVVELDR-----EKNRVVLSHRAVVEEEEASKKKAALQSLQ 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V ++ +G VV++ +FGAFV+  G  DGLVHISQLS  RV   SDVVKEGD V VK+L  
Sbjct: 194 -VGQVLEGTVVRMTNFGAFVNI-GEVDGLVHISQLSHARVDHPSDVVKEGDVVKVKVLAI 251

Query: 678 DDR-GKIKLSMKVVDQNTG 695
           D+  G++ LSMK       
Sbjct: 252 DEESGRVSLSMKAALPAPW 270



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             KV   D+ + +++ S  A + A       I    +   + +G V ++  FGAFV    
Sbjct: 245 KVKVLAIDEESGRVSLSMKAALPA---PWDGIEQKIKEGDVLEGTVKRLAPFGAFVEVFP 301

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
             +GLVHISQ+ST+ +    +V+KEGD V VK+L  +++  ++ LS++ + ++
Sbjct: 302 GVEGLVHISQISTKHIGAPHEVLKEGDVVKVKVLAVNEQEKRLSLSIRELLED 354



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           EM +    V EV    KGQV KV D    +   G++  G++ IS+LS+  + K SDV+  
Sbjct: 11  EMNQVDVRVYEVGDTVKGQVTKVEDKQVLIDVEGSKLVGIIPISELSSLHIEKASDVLSV 70

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVD-QNTGKPI 698
           GD V  K+   +D   I LS K  D +   + +
Sbjct: 71  GDAVVAKVKKVEDEALI-LSKKAADAEKAWEEL 102


>gi|260773187|ref|ZP_05882103.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
 gi|260612326|gb|EEX37529.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
          Length = 556

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSVERDELLETLQEGTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +++  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHRL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVDVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVDVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S          D  K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVPGEEAVRDY-KKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S+++ +R+   S ++  G
Sbjct: 439 DPFNAYVADNKKGTLVNGTVTAVDAKGATITLEDGVEGYIRASEIARDRIEDASLLLSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEADEQE 529


>gi|261417937|ref|YP_003251619.1| 30S ribosomal protein S1 [Geobacillus sp. Y412MC61]
 gi|319767251|ref|YP_004132752.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
 gi|261374394|gb|ACX77137.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61]
 gi|317112117|gb|ADU94609.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
          Length = 387

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P  + +     GK +   V +        +   V ++  ++ E E AR+    ++ + 
Sbjct: 137 VEPHYVEDFSDYKGKTLSVKVVELDR-----EKNRVILSHRAVVEEEQARQQKELLSRL- 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V ++ DFG FV   G  DGLVHISQLS  RVA  S+VVKEGD V VK+L  
Sbjct: 191 EPGQVLDGVVRRIADFGVFVDVGGF-DGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAV 249

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D + G++ LS+K       +
Sbjct: 250 DPENGRLSLSIKEALPGPWE 269



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +++  +   +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD
Sbjct: 267 PWEGLSEKVKPGDVVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326

Query: 669 TVWVKLLDFDD-RGKIKLSMK 688
            V  K+LD ++   ++ LS++
Sbjct: 327 VVKAKVLDVNEADHRLSLSIR 347



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           E +    +V EV  I +G+VVK+ D    V    ++  G++ IS+LS   + K SD V  
Sbjct: 3   EEMNVQVNVYEVGDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAV 62

Query: 667 GDTVWVKLLDFD-----DRGKIKLSMKVVD-QNTGKPI 698
           GD V  K+   +     + G + LS + VD +   + +
Sbjct: 63  GDEVTAKVKKVEEGKDGEEGLLILSKRAVDAERAWEDL 100


>gi|200388687|ref|ZP_03215299.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605785|gb|EDZ04330.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 776

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVEDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|257464687|ref|ZP_05629058.1| 30S ribosomal protein S1 [Actinobacillus minor 202]
 gi|257450347|gb|EEV24390.1| 30S ribosomal protein S1 [Actinobacillus minor 202]
          Length = 554

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I   E      + +V   D     ++      G + 
Sbjct: 23  VKGTVVAIQKGYVIVDTGFKSESAIEASEFTNAQGELEVQVGDVVDVVLKAVEDGFGETV 82

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  +   ++ KV     ++L      +    +    +R+
Sbjct: 83  VSRGDAKRNEAWIALEKAFEEQATVTGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 142

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + G+ +   V +   K N      V ++  ++ E   + +    + ++ E +++ KG
Sbjct: 143 SLNLEGQTLELKVIKLDQKRN-----NVVVSRRAVIETTNSADREEVLANLVEGSEV-KG 196

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD D+ ++ 
Sbjct: 197 VVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVTVGQEVTVKVLKFDKDKTRVS 255

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 256 LGLKQLGQDPWVAIA 270



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKE 666
                      N    G++  + DFG F+   G  DGLVH+S +S E V     V   K+
Sbjct: 352 PWEHFAATHNKNDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWE-VQGEEAVRNYKK 410

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           GD V   +L  D  + +I L +K +  + 
Sbjct: 411 GDEVEAVVLQVDAVKERISLGIKQLSSDP 439



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     V     G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 263 QDPWVAIAQNHPVGSKLSGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 322

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 323 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 354



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +   I  G+V  V   G  V   G  +  +  ++ + +RV   + V+  G
Sbjct: 438 DPFSNFIDSTKKGAIVSGKVTAVDAKGVTVELEGGVEAYIRANEATLDRVEDITSVISVG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMK 688
           D++  K    D + + I LS++
Sbjct: 498 DSIEAKYTGVDRKARVINLSVR 519


>gi|90075056|dbj|BAE87208.1| unnamed protein product [Macaca fascicularis]
          Length = 241

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GL+H + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLIHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|261253452|ref|ZP_05946025.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891]
 gi|260936843|gb|EEX92832.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891]
          Length = 556

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGAEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G VV V   GA +      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVAEKKKGTLVNGTVVAVDAKGATIELEEGVEGYIRASEVSRDRVEDASLILSAG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D+V  K    D + + I LS+K  D+   + 
Sbjct: 499 DSVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440


>gi|297564549|ref|YP_003683521.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM
           9946]
 gi|296848998|gb|ADH62013.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946]
          Length = 129

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 48/83 (57%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   I +G+V ++MDFGAFV       GLVHISQ++ E V    D + EG+ + V +
Sbjct: 1   MQIEAGAIVEGRVTRIMDFGAFVELPNGESGLVHISQIAHEFVKNVRDHLSEGEVIQVMV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L  DD+G++ LS+K +     +P
Sbjct: 61  LGRDDKGRLDLSIKELTPAPVEP 83


>gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
          Length = 498

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 30/280 (10%)

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
            S+A+ + G P    +A +   +    D  I+   +   +     +D     T+  I + 
Sbjct: 26  GSVAVDNLGSP-EAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGY-KTEGVIPSK 83

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------ 557
           ++ +K       ++ +  +     +     E   +LS+ R Q       +E +       
Sbjct: 84  ELSIKHDVDPFEVVNVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVV 143

Query: 558 ------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASS 598
                 +    +   IG+ G +   +VE             +  AK+   D     +  S
Sbjct: 144 TGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLS 203

Query: 599 SLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
             A +E  + E+ ++     +  +I KG V  +++FGAFV   G  DGLVH+S+LS + +
Sbjct: 204 RRAWLEQTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHI 262

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 263 DHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302



 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
 gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
          Length = 392

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +  S    +E AR+  RS      +     KG V  ++DFGAFV   G  DGL+
Sbjct: 175 DRNRNNVVLSRRVVLEEARKAERSEILSKLQPGMRLKGTVSSIVDFGAFVDL-GGIDGLI 233

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           HIS+LS   V   S+VVK G  V V++LD D +R +I L +K   ++  + +V
Sbjct: 234 HISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTEDPWRTLV 286



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R++     V  I +G V K++ FGAFV      +GLVHIS+++ + V   + V   G
Sbjct: 280 DPWRTLVKKYPVGAIVEGSVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVDAPAQVCAVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           DTV VK+++ D DR +I LSMK   +  G  +
Sbjct: 340 DTVQVKVMEIDLDRRRISLSMKAAAETLGVEV 371



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      +      +G++   +LS  +     +VV  GDT+   +L   D 
Sbjct: 35  DLVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDVNPEEVVALGDTIEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K  +
Sbjct: 95  EGRLILSKKRAE 106


>gi|262278924|ref|ZP_06056709.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus RUH2202]
 gi|262259275|gb|EEY78008.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus RUH2202]
          Length = 557

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           +D  V   D+G+  T +  +      +   +    +  +     I  ++    +     +
Sbjct: 68  VDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPV 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P   +   P   IR+   + GK +   V +  AK N   +  V   +   AE  A 
Sbjct: 128 RAFLPGSLVDTRP---IRDTTHLEGKELEFKVIKLDAKRN---NVVVSRRAVMEAESSAD 181

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +     E  +   G +  + D+GAFV   G  DGL+HI+ ++ +R+   S+VV+ 
Sbjct: 182 REALLAQ---LEEGQTVTGTIKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEVVEV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V VK+L FD +R ++ L +K + ++    I+
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIM 271



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 23/248 (9%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
            PV     G + D       + + G E                +  +        +S   
Sbjct: 125 GPVRAFLPGSLVDTRPIRDTTHLEGKELEF------------KVIKLDAKRNNVVVSRRA 172

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGG 571
           ++ A   A R  L    E  + ++ +   L ++   V++  I       D     I    
Sbjct: 173 VMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPS 232

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    E T   +  D +                 +   +I        I K +V  + 
Sbjct: 233 EVVEVGQEVTVKVLKFDRERNRVSLGLKQLG----EDPWLAIMSRYPKGSIVKARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L +K 
Sbjct: 289 DYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 TRANPWEE 356



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G +K+  D+    D+ G +   H+  M +K     S +  +  ++ +  +  +    
Sbjct: 194 TVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFD---- 249

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R R  +   + ++  +  L +    P+  I+      + +      I  G + +
Sbjct: 250 ------RERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGL 303

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E      NI     V+I       +    E                        E 
Sbjct: 304 VHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEK 363

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
            +   G +  + DFG F+   G  DGLVH+S +S  E+  +     K+GDTV   +L  D
Sbjct: 364 GEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVD 423

Query: 679 DRG-KIKLSMKVVDQNT 694
             G +I L +K ++ + 
Sbjct: 424 AEGNRISLGIKQLNSDP 440



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V   GA V      +  +  S+++ +RV   +  ++ G  V  K+++ 
Sbjct: 449 ERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINV 508

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + I LS+K  D+   K  V
Sbjct: 509 DRKSRSINLSVKAKDEAEEKEAV 531


>gi|251782575|ref|YP_002996877.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391204|dbj|BAH81663.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127399|gb|ADX24696.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 401

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIE-AAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    IE AA+E    +        +  G V ++  F
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVIEEAAKEARTEVFSKLSEGAVVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 385

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 21/206 (10%)

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL----------GEFTP 551
            +++DM+ G ++ +        A      +L     +  E R  +            F P
Sbjct: 71  VLKVDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVADVGVRAFIP 130

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
                 +    + N+    G+ +R  V      + +D      I S      E +    R
Sbjct: 131 ASL---VDRHFVENLEQFKGQKLRAKV------IEVDPQKNKLILSRRAVLEEESEARAR 181

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            + +  +   + +G V ++ DFGAFV   GA DGLVHIS+LS   V   S+VV+EGD V 
Sbjct: 182 KLFEELKPGDVIEGTVQRLTDFGAFVDVGGA-DGLVHISELSFSHVNHPSEVVREGDRVK 240

Query: 672 VKLLDFDDR-GKIKLSMKVVDQNTGK 696
           V++L  D   G+I LS+K       +
Sbjct: 241 VRVLRVDPEAGRISLSIKAALPEPWE 266



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   +     +   + +G V +V+DFGAFV      +GLVH+SQ+S E V K SDV++ G
Sbjct: 263 EPWETYAHEFQPGDVVQGVVRRVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPG 322

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V V++L  D +R +I LSM+   Q 
Sbjct: 323 QEVTVRVLSVDPERKRISLSMRDSSQP 349



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G+V  V D G  V      +G +   +LS       SDVV  G TV  ++L  D +
Sbjct: 18  DVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTVTAQVLKVDME 77

Query: 680 RGKIKLSMKVVDQ-----------NTGKPI 698
            G + LS +  +Q            +G+PI
Sbjct: 78  SGHVTLSKRRAEQASAWERMQQLLESGEPI 107


>gi|240949276|ref|ZP_04753620.1| 30S ribosomal protein S1 [Actinobacillus minor NM305]
 gi|240296392|gb|EER47036.1| 30S ribosomal protein S1 [Actinobacillus minor NM305]
          Length = 554

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 17/255 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS- 513
           +   V  I  G V     F   S I   E      + +V   D     ++      G + 
Sbjct: 23  VKGTVVAIQKGYVIVDTGFKSESAIEASEFTNAQGELEVQVGDVVDVVLKAVEDGFGETV 82

Query: 514 -------ENIMVMALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
                   N   +AL++A   +  +   ++ KV     ++L      +    +    +R+
Sbjct: 83  VSRGDAKRNEAWIALEKAFEEQATVTGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRD 142

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            + + G+ +   V +   K N      V ++  ++ E   + +    + ++ E +++ KG
Sbjct: 143 SLNLEGQTLELKVIKLDQKRN-----NVVVSRRAVIETTNSADREEVLANLVEGSEV-KG 196

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ ++ +RV   S+VV  G  V VK+L FD D+ ++ 
Sbjct: 197 VVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEVVTVGQEVTVKVLKFDKDKTRVS 255

Query: 685 LSMKVVDQNTGKPIV 699
           L +K + Q+    I 
Sbjct: 256 LGLKQLGQDPWVAIA 270



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKE 666
                      N    G++  + DFG F+   G  DGLVH+S +S E V     V   K+
Sbjct: 352 PWEHFAATHNKNDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWE-VQGEEAVRNYKK 410

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           GD V   +L  D  + +I L +K +  + 
Sbjct: 411 GDEVEAVVLQVDAVKERISLGIKQLSSDP 439



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     V     G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 263 QDPWVAIAQNHPVGSKLSGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 322

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            GD V V +L+ D +R +I L +K    N  +
Sbjct: 323 VGDVVEVMVLEVDEERRRISLGLKQCKANPWE 354



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  V   G  V   G  +  +  ++ + +RV   + V+  GD +  K    D + 
Sbjct: 452 IVSGKVTAVDAKGVTVELEGGVEAYIRANEATLDRVEDITSVISVGDAIEAKYTGVDRKA 511

Query: 682 K-IKLSMK 688
           + I LS++
Sbjct: 512 RVINLSVR 519


>gi|325578217|ref|ZP_08148352.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
 gi|325159953|gb|EGC72082.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
          Length = 549

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +S  V  I  G V         S I   E  +  G ++ KV  T +          
Sbjct: 20  QGSIVSGTVVAIQKGFVLVDAGLKSESAIPVAEFQNAQGELEVKVGDTVNVALDAVEDGY 79

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQILENLAE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWVAIA 271



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQILENLAEGSEVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEVDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKPNPW 354



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 129/366 (35%), Gaps = 56/366 (15%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            E    +  ++G  +  F +  N    FLP +  +         RE  H  L  + +   
Sbjct: 103 EEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTRP-----AREADH--LLGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     +    L  +  G  +         G+VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESENSQEREQI----LENLAEGSEVK--------GIVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        ++  ++     + +   
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEVTVKVLKFDKDRTRVSL 257

Query: 529 --LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               +  +    ++E+     + T +V  +      +  + G+ G V   + E      N
Sbjct: 258 GLKQLGQDPWVAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLV--HVSEMDWTNKN 315

Query: 587 IDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVM 631
           I     V +  +    +    E  R                  +         G++  + 
Sbjct: 316 IHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIKSIT 375

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DFG F+   G  DGLVH+S +S   VA    V   K+GD V   +L  D  + +I L +K
Sbjct: 376 DFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVRNYKKGDEVSAVVLAVDAVKERISLGIK 434

Query: 689 VVDQNT 694
            ++ + 
Sbjct: 435 QLEDDP 440



 Score = 44.1 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +   +    VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVAVNKKGAVVSATVVEADAKGAKVELAGGIEGYIRAADLTNE--------VAAG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVKAKDQ 516


>gi|313115242|ref|ZP_07800722.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622435|gb|EFQ05910.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 636

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +ID +          AE          + +   +   +   VV +  FGAFV      DG
Sbjct: 529 DIDTENHKVSLGYKKAEDN----PWEQLKNNYPIGSTFHAPVVSLTKFGAFVRILPGVDG 584

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS++S +RV K SDV+K GD V V+LLD D D+ +I LSMK +  +  +
Sbjct: 585 LVHISEISNDRVEKVSDVLKVGDMVDVRLLDVDFDKKRISLSMKALLNDDAE 636



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G+  +             +  A +  +     +       +  +  
Sbjct: 350 DELDLIVEKVMDQDGVIQLSRKKLASRKGMEEIAKAAESGEVVEGDVTEFNKGGVVVNVK 409

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F PR +      +    ++G   +++  + E +G K+       V   +   AE  
Sbjct: 410 GVKVFVPRSQATMRRDEDYTALVGQHVQLV--VTECSGRKI-------VGSINKVTAEQN 460

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+          EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV
Sbjct: 461 KAK--REEFWANVEVGKTYTGVVKSLTSYGAFVDI-GGVDGLCHISELSWNRIKHPSEVV 517

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GDT+ V + D D +  K+ L  K  + N  + +
Sbjct: 518 SVGDTIEVYVKDIDTENHKVSLGYKKAEDNPWEQL 552



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++    +++     +     +  S         I KG V  +      V     + G
Sbjct: 268 SIIEEVLNSMSAEINDSMSFEEMLNASEEKRVHAGSIVKGIVTSISANEIQVDIGAKQTG 327

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV 690
            V +S+L+ +  AK  D+VK GD + + +    D  G I+LS K +
Sbjct: 328 FVKLSELTDDSSAKVEDLVKVGDELDLIVEKVMDQDGVIQLSRKKL 373


>gi|300725196|ref|YP_003714524.1| protein yhgF [Xenorhabdus nematophila ATCC 19061]
 gi|297631741|emb|CBJ92460.1| Protein yhgF [Xenorhabdus nematophila ATCC 19061]
          Length = 783

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +     +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 642 ETMNDLQTGMTLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKTGDIVK 701

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK++D D +R +I L+M+ +D+  G+
Sbjct: 702 VKVMDVDLNRKRIALTMR-LDEQPGE 726


>gi|262393793|ref|YP_003285647.1| 30S ribosomal protein S1p [Vibrio sp. Ex25]
 gi|269966533|ref|ZP_06180616.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
 gi|262337387|gb|ACY51182.1| SSU ribosomal protein S1p [Vibrio sp. Ex25]
 gi|269828877|gb|EEZ83128.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
          Length = 556

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    V  V   GA V      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVADNKKGVLVNATVTAVDAKGATVEIAEGVEGYIRASEVSRDRVEDASLILSAG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DVVEAKFTGVDRKNRVINLSIKAKDEADEQE 529


>gi|291399417|ref|XP_002716156.1| PREDICTED: zinc finger, CCHC domain containing 17 [Oryctolagus
           cuniculus]
          Length = 201

 Score = 96.1 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 98


>gi|134302709|ref|YP_001122677.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050486|gb|ABO47557.1| Ribosomal protein S1 [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++V  +  K I   V +   K N      + ++  ++ E   + +    +  + E
Sbjct: 140 P---IKDVAHLEDKDIELKVVKIDTKRN-----NIVVSRKAVIEENNSGDRDAMLEKISE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 192 GS-VLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEINVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEINVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRPNPW 354



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSITLSIKAVDED 526



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 EVEAVLVSVNTDLERIALSMKQLSEDP 439


>gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium sp. P08]
          Length = 498

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 46/307 (14%)

Query: 420 PYTLRIVSEITESDGSSSMATV--CGSSLALMDAGVPISKPVAG-IAMGLVKDGDDFIIL 476
           P  +   + +  +DGS ++  +    + LA +DA   I     G I  G V   D   +L
Sbjct: 12  PVDIDQQNAVNTADGSVTVDDLGSTEAFLAAVDAT--IKYFNDGDIVSGTVVKVDRDEVL 69

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            DI                T+  I + ++ +K       ++ +  +     +     E  
Sbjct: 70  LDIGY-------------KTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKEDKEGR 116

Query: 537 KVLSESRLQLGEFTPRVEIMA------------IPPDQIRNVIGMGGKVIRGIVE----- 579
            +LS+ R Q       +E +             +    +   IG+ G +   +VE     
Sbjct: 117 LILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVR 176

Query: 580 --------QTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKV 630
                   +  AK+   D     +  S  A +E  + E+ +S     +  +I KG V  +
Sbjct: 177 DLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQSFLHQLQKGQIRKGVVSSI 236

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K 
Sbjct: 237 VNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKA 295

Query: 690 VDQNTGK 696
             ++  +
Sbjct: 296 TQEDPWQ 302



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++   + ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV   
Sbjct: 299 DPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVN 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D DR +I LS+K  ++
Sbjct: 359 DDVMVKIIDIDLDRRRISLSLKQANE 384


>gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
 gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
          Length = 489

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +R       +  ++ KG +  +++FG
Sbjct: 167 YIGQKIEAKIIELDKNRNNVVLSRRAWLEQTQSAVRQNFLTELKKGQVRKGVISSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   ++VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPNEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWQHFARTHQIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQIG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D+V VK++D D +R +I LS+K  ++   
Sbjct: 345 DSVMVKIIDIDLERRRISLSLKQANETEA 373



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VK+      +      +G++   +LS +     ++VV  GDTV   +L   D 
Sbjct: 40  DIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVALGDTVEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|213647810|ref|ZP_03377863.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
          Length = 774

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 650 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 709

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 710 RKRIALTMR-LDEQPGE 725


>gi|145633320|ref|ZP_01789051.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
 gi|144986166|gb|EDJ92756.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKTNPW 354



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKTN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 45.3 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTSE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVDAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|46195824|ref|NP_996861.1| nucleolar protein of 40 kDa [Gallus gallus]
 gi|41059103|gb|AAR99080.1| PS1D [Gallus gallus]
          Length = 239

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +  +PE+  I++G+V  V ++GAF+   G  + GLVH + +S+ R+ K S+VV  GD VW
Sbjct: 1   MEPLPELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEVVDVGDKVW 60

Query: 672 VKLLD---FDDRGKIKLSMKVVDQNTGKPI 698
           VKL+     DD+ K+ LSMKVV+Q TGK +
Sbjct: 61  VKLIGKEMKDDKLKLSLSMKVVNQGTGKDL 90


>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
          Length = 413

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + I+      I S          +    I    +   + +G+V ++ +FGAFV
Sbjct: 160 QELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAFV 219

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S++S + V K SDV+  G  V VK+L  D DR +I LS+K        
Sbjct: 220 DL-GGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGPWD 278

Query: 697 PI 698
            I
Sbjct: 279 DI 280



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +         G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G 
Sbjct: 276 PWDDIEEKAPAGSTLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQ 335

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V VK+L+ D +R ++ LSMK +++  
Sbjct: 336 EVQVKVLNVDPERQRLGLSMKALEERP 362


>gi|222153157|ref|YP_002562334.1| 30S ribosomal protein S1 [Streptococcus uberis 0140J]
 gi|222113970|emb|CAR42251.1| putative 30S ribosomal protein S1 [Streptococcus uberis 0140J]
          Length = 405

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 575 RGIVEQTGAKVNIDD--DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           + + ++  AK+   D  +    ++   + E   A       + + E + +  G V ++  
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVIEETTAAARQEVFSKLSEGS-VVTGTVARLTS 206

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691
           FGAF+   G  DGLVH+++LS ER      VV  GD V VK+L  D+  G++ LS+K   
Sbjct: 207 FGAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLSIDEEAGRVSLSLKATT 265

Query: 692 QNTG 695
               
Sbjct: 266 PGPW 269


>gi|218710037|ref|YP_002417658.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
 gi|218323056|emb|CAV19233.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKACEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           D D+ R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  ++ 
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEMQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S    A   + V+E   GD +   +
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--AAGEEAVREYKKGDEISAVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 420 LAVDAERERISLGVKQMENDP 440



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 439 DPFNAYVADNKKGVLVNGTVTAVDAKGATIELIEGVEGYLRASEVSRDRIEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D+V  K    D + + I LS+K  D+   + 
Sbjct: 499 DSVEAKFTGVDRKNRVINLSIKAKDEADEQE 529


>gi|187932250|ref|YP_001892235.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187713159|gb|ACD31456.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++V  +  K I   V +   K N      + ++  ++ E   + +    +  + E
Sbjct: 140 P---IKDVAHLEDKDIELKVVKIDTKRN-----NIVVSRKAVIEENNSGDRDAMLEKISE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 192 -SSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSITLSIKAVDED 526



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+    +  ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISESSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRPNPW 354



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 EVEAVLVSVNTDLERIALSMKQLSEDP 439


>gi|153941510|ref|YP_001391062.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum F str. Langeland]
 gi|152937406|gb|ABS42904.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum F str.
           Langeland]
 gi|295319111|gb|ADF99488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1-like protein [Clostridium botulinum F str.
           230613]
          Length = 638

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 11/206 (5%)

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554
             + G   + +       +   +  A +  +  ++ + + +   L      +  F P   
Sbjct: 361 KNEDGYVVLSLKELHREKALKNLKEAFENKQTIKVIVKDAVDAGLICIYNGVRVFIPASH 420

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           I     D +    G+  +V   I+E       I D    KI  S    ++  R      T
Sbjct: 421 IELSHVDDLEAYKGLELEV--NIIE------FIKDRYRTKIVGSRRNILKTIRNKHIEET 472

Query: 615 D-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               E + + +G+V +  DFGAF+      DGL+H+S++S  RV K  D +K GD + V 
Sbjct: 473 WNSLEKDTVVEGEVKRFTDFGAFIEI-NGVDGLLHVSEISWGRVEKPEDALKIGDKIKVY 531

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +LD D +  K+ LS+K + ++  K +
Sbjct: 532 ILDIDKENKKLALSIKKLIEDPWKSV 557



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G VE+    + I D   V I        + A        +  +S+     +  I  G+V
Sbjct: 512 WGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSVEIKYPIGNIVLGKV 571

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I LS
Sbjct: 572 VRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRIALS 631

Query: 687 MKVVDQ 692
           +K V++
Sbjct: 632 IKDVEE 637



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       S            +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAINKMNNND-------SIIEVSKNEMLNYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++ +  +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLNYKSEGIIPKEEVTLDEESILKESFKVGDKIEAKIVRIKN 362

Query: 679 DRGKIKLSMKVV 690
           + G + LS+K +
Sbjct: 363 EDGYVVLSLKEL 374


>gi|145634451|ref|ZP_01790161.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
 gi|145641111|ref|ZP_01796692.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
 gi|145268431|gb|EDK08425.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
 gi|145274272|gb|EDK14137.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.4-21]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTSE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|16762783|ref|NP_458400.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|56415419|ref|YP_152494.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364349|ref|YP_002143986.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|213163102|ref|ZP_03348812.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213852068|ref|ZP_03381600.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289824836|ref|ZP_06544279.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25304123|pir||AB0998 probable transcription accessory protein STY4292 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505089|emb|CAD08110.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|56129676|gb|AAV79182.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095826|emb|CAR61399.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 776

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|308493535|ref|XP_003108957.1| CRE-MOG-5 protein [Caenorhabditis remanei]
 gi|308247514|gb|EFO91466.1| CRE-MOG-5 protein [Caenorhabditis remanei]
          Length = 1208

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLS 653
                      E     ++V EV KIY G+V  +  FGAF+   G R   +GL HISQ+ 
Sbjct: 222 KDRRERPGRRDEDNSRKSEVAEVGKIYDGRVNSIQTFGAFITLEGFRQKQEGLAHISQIR 281

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            ERV   +DV+K G +V VK+    + GKI L+MK VDQ+TG+ +
Sbjct: 282 NERVQSVADVLKRGQSVKVKVNKI-ENGKISLTMKEVDQSTGEDL 325


>gi|29144270|ref|NP_807612.1| transcription accessory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|29139907|gb|AAO71472.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 776

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|238792873|ref|ZP_04636503.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
           29909]
 gi|238727727|gb|EEQ19251.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
           29909]
          Length = 792

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|238754100|ref|ZP_04615458.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
 gi|238707596|gb|EEP99955.1| hypothetical protein yruck0001_27010 [Yersinia ruckeri ATCC 29473]
          Length = 782

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D
Sbjct: 649 VGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVD 708

Query: 679 -DRGKIKLSMKVVDQNTGK 696
             R +I L+M+ +D+  G+
Sbjct: 709 LQRKRIALTMR-LDEQPGE 726


>gi|168241644|ref|ZP_02666576.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194449194|ref|YP_002047528.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194407498|gb|ACF67717.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205339078|gb|EDZ25842.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 776

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|1402875|emb|CAA66825.1| RNA helicase [Arabidopsis thaliana]
 gi|1495271|emb|CAA66613.1| RNA helicase [Arabidopsis thaliana]
          Length = 1121

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 3/94 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVK 665
           E  +   + PE+ ++YKG+V +VMD G FV F     ++GLVH+SQ++T RV K  + VK
Sbjct: 155 EEDKGGANEPELYQVYKGRVTRVMDAGCFVQFDKFRGKEGLVHVSQMATRRVDKAKEFVK 214

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
               V+VK++      K  LSM+ VDQNTG+ ++
Sbjct: 215 RDMEVYVKVISI-SSDKYSLSMRDVDQNTGRDLI 247


>gi|145639201|ref|ZP_01794808.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
 gi|145271763|gb|EDK11673.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
 gi|309750777|gb|ADO80761.1| 30S ribosomal protein S1 [Haemophilus influenzae R2866]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGIVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTNE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|312864811|ref|ZP_07725042.1| putative ribosomal protein S1 [Streptococcus downei F0415]
 gi|311099938|gb|EFQ58151.1| putative ribosomal protein S1 [Streptococcus downei F0415]
          Length = 400

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        +  G V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIDGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L  D D  ++ LS+K + +   
Sbjct: 328 EVQVKVLSVDADAERVSLSIKALQERPA 355



 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P   +           +G         +E    +++  ++  +      + E  A
Sbjct: 129 LRGFIPASMLDTRFVRNTEQFVGQD-------IEAKIKEIDPAENRFILSRREVVEEKNA 181

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A    + I    EV  I  G+V ++  FGAFV   G  DGLVH+++LS ER      VV 
Sbjct: 182 AA--RQEIFSKLEVGSIVTGKVARLTSFGAFVDL-GGVDGLVHVTELSHERNVSPKSVVS 238

Query: 666 EGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
            GD + VK+L  D+  G+I LS+K       
Sbjct: 239 VGDEIDVKVLAIDEEAGRISLSLKATTPGPW 269



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            AR+    +       ++   +  + +  G  V F G R G +  S L T  V  T   V
Sbjct: 94  EARKAWDKLVGRE--GEVVTVKGTRAVKGGLSVEFEGLR-GFIPASMLDTRFVRNTEQFV 150

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             G  +  K+ + D    +  LS + V + 
Sbjct: 151 --GQDIEAKIKEIDPAENRFILSRREVVEE 178


>gi|229845053|ref|ZP_04465189.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
 gi|229846877|ref|ZP_04466984.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
 gi|229810366|gb|EEP46085.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
 gi|229812025|gb|EEP47718.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTNE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|237808314|ref|YP_002892754.1| 30S ribosomal protein S1 [Tolumonas auensis DSM 9187]
 gi|237500575|gb|ACQ93168.1| ribosomal protein S1 [Tolumonas auensis DSM 9187]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 21/260 (8%)

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           G  +   V  I  G+V         S I  ++      + +VA  D  +  + +D    G
Sbjct: 21  GAIVKGTVVAIENGIVLVDAGLKSESAIPAEQFKNALGELEVALGD--VVDVALDSVEDG 78

Query: 512 ISENIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPP 560
             E ++             L++A   +  ++  ++ KV     ++L      +    +  
Sbjct: 79  FGETLLSREKAKRHEAWLQLEKAYEEQATVVGLINGKVKGGFTVELNGIRAFLPGSLVDV 138

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             +R+   + GK +   V +   K N      V ++  ++ E E + E    ++ + E +
Sbjct: 139 RPVRDTAHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIETENSSERDSLLSSLQEGH 193

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +
Sbjct: 194 EV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRE 251

Query: 680 RGKIKLSMKVVDQNTGKPIV 699
           R ++ L +K + ++    I 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIA 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGARLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +LD D +R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDTVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 133/370 (35%), Gaps = 82/370 (22%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------AHLEGKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ SS   ++    L+ +  G  +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIETENSSERDSL----LSSLQEGHEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMA---------------------------IPPDQIRNVIG 568
              +++   +    T RV  +                            I P ++ NV  
Sbjct: 267 WVAIAKRYPEGARLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV-- 324

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
             G  +  +V      ++ID++           +        +   +         G++ 
Sbjct: 325 --GDTVEVMV------LDIDEERRRISLGLKQCKAN----PWQQFAETHAKGDRVSGKIK 372

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DRGKIK 684
            + DFG F+   G  DGLVH+S +S    A   D V+E   GD +   +L  D +R +I 
Sbjct: 373 SITDFGIFIGLDGGIDGLVHLSDISWN--ATGEDAVREFKKGDEIEAVVLQVDPERERIS 430

Query: 685 LSMKVVDQNT 694
           L +K ++++ 
Sbjct: 431 LGVKQIEEDP 440



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V  V   GA +      +G +  +  S +RV   S V+  GD V  K +  D + 
Sbjct: 453 IVKGKVTAVDSKGATIELEEGVEGYIRSADASRDRVEDASLVLSVGDEVEAKFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + + LS++  D+   K
Sbjct: 513 RTVSLSVRAKDEAEEK 528


>gi|168465228|ref|ZP_02699120.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195632126|gb|EDX50610.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 777

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|161505930|ref|YP_001573042.1| hypothetical protein SARI_04111 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867277|gb|ABX23900.1| hypothetical protein SARI_04111 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 776

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLANKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|16422063|gb|AAL22366.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|261248659|emb|CBG26497.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995724|gb|ACY90609.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160047|emb|CBW19566.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|332990356|gb|AEF09339.1| putative RNase R [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 775

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|146280673|ref|YP_001170826.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri
           A1501]
 gi|145568878|gb|ABP77984.1| S1 RNA binding domain protein [Pseudomonas stutzeri A1501]
          Length = 772

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A    + IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGENPLDASAVHPETYPLVQRIAQDTGRDIRSLIGDSAFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E               + +G V
Sbjct: 599 --DPKQFTDETFGLPTVTDILGELDKPGRDPRPEFKTAEFQDGVEKLSDLEPGMVLEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGAK 726


>gi|15231574|ref|NP_189288.1| ATP-dependent RNA helicase, putative [Arabidopsis thaliana]
 gi|27735187|sp|Q38953|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase
 gi|9293935|dbj|BAB01838.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein
           [Arabidopsis thaliana]
 gi|332643657|gb|AEE77178.1| ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana]
          Length = 1168

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 3/94 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVK 665
           E  +   + PE+ ++YKG+V +VMD G FV F     ++GLVH+SQ++T RV K  + VK
Sbjct: 202 EEDKGGANEPELYQVYKGRVTRVMDAGCFVQFDKFRGKEGLVHVSQMATRRVDKAKEFVK 261

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
               V+VK++      K  LSM+ VDQNTG+ ++
Sbjct: 262 RDMEVYVKVISI-SSDKYSLSMRDVDQNTGRDLI 294


>gi|167990707|ref|ZP_02571806.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168260772|ref|ZP_02682745.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197264071|ref|ZP_03164145.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|308065953|ref|NP_462407.2| RNase R [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197242326|gb|EDY24946.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205330816|gb|EDZ17580.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205350471|gb|EDZ37102.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|312914528|dbj|BAJ38502.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226554|gb|EFX51604.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323131863|gb|ADX19293.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 776

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|68250248|ref|YP_249360.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
 gi|68058447|gb|AAX88700.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGIVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGIVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 44.9 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTSE--------VAIG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|70733781|ref|YP_257421.1| S1 RNA-binding domain-containing protein [Pseudomonas fluorescens
           Pf-5]
 gi|68348080|gb|AAY95686.1| S1 RNA binding domain protein [Pseudomonas fluorescens Pf-5]
          Length = 873

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A    + IR++IG  G + R    
Sbjct: 641 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTGRDIRSLIGDSGFLKRL--- 697

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E               I +G V
Sbjct: 698 --DPKKFTDETFGLPTVTDILQELDKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 755

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 756 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 815

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 816 MRMGD-TPGEKI 826


>gi|87308954|ref|ZP_01091092.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
 gi|87288297|gb|EAQ80193.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
          Length = 536

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
              +  S+ A  E A+E  R  T V  +V ++  G V ++ DFGAFV   G  DGLVH+S
Sbjct: 300 RRNLVLSARAVAEKAKEDSRKETMVTLQVGQMRDGTVTRLQDFGAFVDI-GGVDGLVHVS 358

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           Q+S +RV   SD + EG  V VK+   D + GKI LS++   +N  + + 
Sbjct: 359 QISWDRVKHPSDALSEGQAVRVKVTKIDPETGKIGLSIRDTLENPWQKVA 408



 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + + +   V  I  G+V K+MDFGAFV      +GLVH+S++S  RV++   V+K G+
Sbjct: 403 PWQKVAEEFSVGAIINGKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKAGE 462

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+++ D ++ +I LS+K +     
Sbjct: 463 KVEVKVVNIDKEKRRIGLSIKALSPAPA 490


>gi|323495049|ref|ZP_08100138.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
 gi|323310706|gb|EGA63881.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGAEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVSEKKKGVLVNGTVTAVDAKGATIELEEGVEGYIRASEVSRDRVEDASLILSAG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D+V  K    D + + I LS+K  D+   + 
Sbjct: 499 DSVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529


>gi|238758693|ref|ZP_04619867.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
 gi|238702990|gb|EEP95533.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
          Length = 788

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|325142504|gb|EGC64906.1| ribosomal protein S1 [Neisseria meningitidis 961-5945]
          Length = 416

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 11/198 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +          +  A++        I  ++   L+     +  F P      +
Sbjct: 2   GETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPGSL---V 58

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               +++     GK I   V +   K N      V ++  ++ E     E    + ++ E
Sbjct: 59  DVRPVKDTSHFEGKEIEFKVIKLDKKRN-----NVVVSRRAVLEATLGEERKALLENLQE 113

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V++ G  V  K+L FD
Sbjct: 114 GS-VIKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFD 171

Query: 679 -DRGKIKLSMKVVDQNTG 695
            ++ ++ L MK + ++  
Sbjct: 172 QEKQRVSLGMKQLGEDPW 189



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +T          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 187 DPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 246

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 247 GDEVEVMILEIDEGRRRISLGMKQCQANPWEE 278



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+G  +I+         A        +  + +KI  G V  + DFG FV   G  DGLVH
Sbjct: 258 DEGRRRISLGMKQC--QANPWEEFAANHNKGDKI-SGAVKSITDFGVFVGLPGGIDGLVH 314

Query: 649 ISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 315 LSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 362


>gi|262166045|ref|ZP_06033782.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
 gi|262025761|gb|EEY44429.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSVERDELLETLQEGTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 531



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440


>gi|239994307|ref|ZP_04714831.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A +     +  I  ++    +    
Sbjct: 66  DQVDVALDAVEDGFGETILSREKAKRHEAWVELEKAYEDKATIKGVINGKVKGGFTVEVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +  AK N      V ++  ++ E E
Sbjct: 126 SVRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E ++I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERETLLANLEEGHEI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD ++ ++ L MK +  +  + I 
Sbjct: 236 NVGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIA 271



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--------PEVNKIY 623
            +    V+     VN+ D+  VK+      +   +  M +   D         PE  KI 
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKI- 280

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            GQV  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D+ R 
Sbjct: 281 NGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVLEIDEERR 340

Query: 682 KIKLSMKVVDQNTGK 696
           +I L +K    N  +
Sbjct: 341 RISLGLKQCIANPWE 355



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 131/361 (36%), Gaps = 64/361 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +      
Sbjct: 112 INGKVKGGFTVEVNSVRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDAKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ S+   T+    LA ++ G  I         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIEAESSAERETL----LANLEEGHEIK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +  ++ +  +  +          + +  +   M +
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFD----------KEKQRVSLGMKQ 261

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + ++   ++    P    +      + +      I  G + +  + E      NI     
Sbjct: 262 MGNDPWQEIASRYPEGTKINGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKV 321

Query: 593 VKIASSSLAEIEAARE---------------MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +  +    +    E                  +  +  E      G++  + DFG F+
Sbjct: 322 VNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIKSITDFGIFI 381

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              G  DGLVH+S +S        D V   K+GD +   +L  D +R +I L +K ++++
Sbjct: 382 GLDGGIDGLVHLSDISWN--KSGEDAVRDYKKGDEISAVVLQVDPERERISLGVKQIEED 439

Query: 694 T 694
            
Sbjct: 440 P 440



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  V   G  V+     DG + ++ L+ ERV   ++V   GD++  K +  D + 
Sbjct: 453 IVTGTVTAVDAKGVTVNLAEEVDGYIRVADLAVERVEDATEVASVGDSIEAKFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K  DQ   K  +
Sbjct: 513 RTVNLSVKAKDQADEKEAI 531


>gi|148827070|ref|YP_001291823.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
 gi|148718312|gb|ABQ99439.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTSE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D +  K    D + +I  LS+K  DQ
Sbjct: 491 DVIEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|145629272|ref|ZP_01785071.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
 gi|145636918|ref|ZP_01792583.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
 gi|260581139|ref|ZP_05848959.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
 gi|260582648|ref|ZP_05850437.1| ribosomal protein S1 [Haemophilus influenzae NT127]
 gi|319776105|ref|YP_004138593.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
 gi|319896914|ref|YP_004135109.1| 30S ribosomal protein s1 [Haemophilus influenzae F3031]
 gi|144978775|gb|EDJ88498.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
 gi|145269999|gb|EDK09937.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
 gi|260092167|gb|EEW76110.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
 gi|260094320|gb|EEW78219.1| ribosomal protein S1 [Haemophilus influenzae NT127]
 gi|301169961|emb|CBW29565.1| 30S ribosomal subunit protein S1 [Haemophilus influenzae 10810]
 gi|317432418|emb|CBY80773.1| 30S ribosomal protein S1 [Haemophilus influenzae F3031]
 gi|317450696|emb|CBY86916.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTSE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|119479157|ref|XP_001259607.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya
           fischeri NRRL 181]
 gi|119407761|gb|EAW17710.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya
           fischeri NRRL 181]
          Length = 1230

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           +     + D P + K+Y G+V  V DFGAFV+  G +   DGLVH+S +    RV   SD
Sbjct: 249 KPPPVELDDQPILYKVYDGRVTGVKDFGAFVNLLGVKGKVDGLVHVSAMQEGARVNHPSD 308

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++      +I LSMK VDQ TG  +V
Sbjct: 309 LVSRGQPVKVKVISIQGS-RIGLSMKEVDQVTGLDLV 344


>gi|156975133|ref|YP_001446040.1| 30S ribosomal protein S1 [Vibrio harveyi ATCC BAA-1116]
 gi|156526727|gb|ABU71813.1| hypothetical protein VIBHAR_02860 [Vibrio harveyi ATCC BAA-1116]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    V  V   GA V      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVADNKKGVLVNATVTAVDAKGATVEIAEGVEGYIRASEVSRDRVEDASLILSAG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DVVEAKFTGVDRKNRVINLSIKAKDEADEQE 529


>gi|329123269|ref|ZP_08251837.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
 gi|327471478|gb|EGF16926.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G  +  +V      + ID++           +            D  
Sbjct: 316 IHPSKVVSL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFADTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S        +VV   K+GD V   +
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS--ISGEEVVRQYKKGDEVSAVV 419

Query: 675 LDFDD-RGKIKLSMKVVDQNT 694
           L  D  + +I L +K ++++ 
Sbjct: 420 LAVDAVKERISLGIKQLEEDP 440



 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +  + L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSADLTSE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|332141546|ref|YP_004427284.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551568|gb|AEA98286.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 504

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 11/214 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +   +  A       +  I  ++    +     +
Sbjct: 54  VDVALDAVEDGFGETILSREKAKRHEAWVELEKAYDDKATIKGVINGKVKGGFTVEVNSV 113

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   + GK +   V +  AK N      V ++  ++ E E++
Sbjct: 114 RAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESS 165

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E ++I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 166 AERETLLANLEEGHEI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 223

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD + VK+L FD ++ ++ L MK +  +  + I 
Sbjct: 224 GDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIA 257



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--------PEVNKIY 623
            +    V+     VN+ D+  VK+      +   +  M +   D         PE  KI 
Sbjct: 208 DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKI- 266

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            GQV  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D+ R 
Sbjct: 267 NGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVLEIDEERR 326

Query: 682 KIKLSMKVVDQNTGK 696
           +I L +K    N  +
Sbjct: 327 RISLGLKQCIANPWE 341



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 130/361 (36%), Gaps = 64/361 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +      
Sbjct: 98  INGKVKGGFTVEVNSVRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDAKRN 150

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ S+   T+    LA ++ G  I         G+VK+  D+    D+
Sbjct: 151 NV-VVSRRAVIEAESSAERETL----LANLEEGHEIK--------GIVKNLTDYGAFVDL 197

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +        I+  ++        + +  +   M +
Sbjct: 198 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKF-----DKEKQRVSLGMKQ 247

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + ++   ++    P    +      + +      I  G + +  + E      NI     
Sbjct: 248 MGNDPWQEIASRYPEGTKINGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKV 307

Query: 593 VKIASSSLAEIEAARE---------------MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +  +    +    E                  +  +  E      G++  + DFG F+
Sbjct: 308 VNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIKSITDFGIFI 367

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              G  DGLVH+S +S        D V   K+GD +   +L  D +R +I L +K ++++
Sbjct: 368 GLDGGIDGLVHLSDISWN--KSGEDAVRDYKKGDEISAVVLQVDPERERISLGVKQIEED 425

Query: 694 T 694
            
Sbjct: 426 P 426



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  V   G  V+     DG + ++ L+ ERV   ++V   GD++  K +  D + 
Sbjct: 439 IVTGTVTAVDAKGVTVNLAEEVDGYIRVADLAVERVEDATEVASVGDSIEAKFMGVDRKN 498

Query: 682 K 682
           +
Sbjct: 499 R 499


>gi|28898804|ref|NP_798409.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807023|dbj|BAC60293.1| ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
 gi|328474637|gb|EGF45442.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus 10329]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    V  V   GA V      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVADNKKGTLVNATVTAVDAKGATVEIAEGVEGYIRASEVSRDRVEDASLILSAG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DVVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529


>gi|289808402|ref|ZP_06539031.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 112

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFS-KLEEEMSQMIKE 250
           A  LSED +L A++FGH + + VI+AI+ L K   K       +  +  L   ++ + + 
Sbjct: 1   AELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAES 60

Query: 251 DLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIV 292
            L  +  I +K  R  Q+D +K + +    +E  + +  E+ 
Sbjct: 61  RLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELG 102


>gi|238797303|ref|ZP_04640804.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
           43969]
 gi|238718940|gb|EEQ10755.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
           43969]
          Length = 788

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC
           484]
 gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484]
          Length = 510

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 29/267 (10%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
             +A I   +    D  I+   I   +     +D     T+  I + ++ +K       +
Sbjct: 44  DFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGY-KTEGVIPSRELSIKHDVDPGEV 102

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------------IPPDQIR 564
           + +  +           E   +LS+ R Q       +E +             +    + 
Sbjct: 103 VKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLI 162

Query: 565 NVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
             IG+ G +   +VE             +  AK+   D     +  S  A +E  +  +R
Sbjct: 163 LDIGLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR 222

Query: 612 SIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           S      +  ++  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V
Sbjct: 223 STFLQTLQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEV 281

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V++LD D DR ++ LS+K   ++  +
Sbjct: 282 TVEVLDVDFDRERVSLSLKATQEDPWQ 308



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 268 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQAFARTHAIGQVVPG 322

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+ GD V+VK++D D +R +I 
Sbjct: 323 KVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRIS 382

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 383 LSLKQANE 390


>gi|260776375|ref|ZP_05885270.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607598|gb|EEX33863.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLESLQEGAEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVSEKKKGVLVNGTVTAVDAKGATIELEEGVEGYIRASEVSRDRVEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D+V  K    D + + I LS+K  D+   + 
Sbjct: 499 DSVEAKFTGVDRKNRVINLSVKAKDEAEEQE 529



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440


>gi|289810200|ref|ZP_06540829.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 233

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 75/138 (54%), Gaps = 8/138 (5%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+ + + GK +   V +   K N      V ++  ++ E E + E  + + ++ E  ++
Sbjct: 1   MRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLENLQEGMEV 55

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R 
Sbjct: 56  -KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERT 113

Query: 682 KIKLSMKVVDQNTGKPIV 699
           ++ L +K + ++    I 
Sbjct: 114 RVSLGLKQLGEDPWVAIA 131



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 82  DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 141

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 142 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 201

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 202 ISLGLKQCKSNPWQ 215


>gi|224086631|ref|XP_002195343.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           [Taeniopygia guttata]
          Length = 1199

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DG 645
           D    +       E    + + R   + P +  IY G+V  +M FG FV   G R   +G
Sbjct: 213 DRRDREKYLEKSHERWRDKHIDRPPAEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEG 272

Query: 646 LVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           LVHIS+L  E RVA  +DVV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 273 LVHISELRREGRVANVADVVSKGQRVKVKVLSFTGS-KTSLSMKDVDQDTGEDL 325


>gi|116333424|ref|YP_794951.1| 30S ribosomal protein S1 [Lactobacillus brevis ATCC 367]
 gi|116098771|gb|ABJ63920.1| SSU ribosomal protein S1P [Lactobacillus brevis ATCC 367]
          Length = 434

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 8/136 (5%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + ++    G+ +   +     ++   ++  +    + + +  AA++    I       
Sbjct: 153 HFVEDLAQFKGQTLEFKI----VEIEPSENRLILSHRAIVEKQRAAQK--EEIMAKLTAG 206

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G+V ++ +FGAFV   G  DGLVH+S+++ ERV K SDV+K G  V VK+L  D D
Sbjct: 207 DVVDGKVARLTNFGAFVDL-GGVDGLVHVSEIAFERVEKPSDVLKVGQDVKVKVLSVDAD 265

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I LS+K       
Sbjct: 266 RDRISLSIKQTLPEPW 281



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    I D         G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G
Sbjct: 279 EPWDGIEDKAPQGSTLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPADVLKVG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             + VK+LD   +  ++ LS+K +++  
Sbjct: 339 QEIKVKVLDVRPEDHRLALSIKALEEKP 366


>gi|104779512|ref|YP_606010.1| RNA-binding transcription accessory protein [Pseudomonas
           entomophila L48]
 gi|95108499|emb|CAK13193.1| putative RNA-binding transcription accessory protein [Pseudomonas
           entomophila L48]
          Length = 775

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG  G + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSGFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQV 627
               K   D+   +   +  L E++      R                  E   I +G V
Sbjct: 599 --DPKKFTDESFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|90023181|ref|YP_529008.1| general secretion pathway protein J [Saccharophagus degradans 2-40]
 gi|89952781|gb|ABD82796.1| RNA binding S1 [Saccharophagus degradans 2-40]
          Length = 772

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 E   I +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD V 
Sbjct: 642 ETIKDLEPGMILEGTVTNVTNFGAFVDVGVHQDGLVHISALSNTFVKDPREVVKAGDIVK 701

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN----TGKP 697
           VK+++ D  R +I +SM++ D+     TG+P
Sbjct: 702 VKVMEVDVPRKRIAMSMRMDDEPGEKVTGRP 732


>gi|310642586|ref|YP_003947344.1| RNA binding s1 domain protein [Paenibacillus polymyxa SC2]
 gi|309247536|gb|ADO57103.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2]
          Length = 408

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +R +V++        ++  V ++   + E E     ++ + ++ 
Sbjct: 144 VERHFVEDFSDYKGRTLRVVVKELDR-----ENNKVILSQKDVLEAEFEANKLKVMAELK 198

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I  G V ++  FGAFV   G  DGLVH+S+++   V K SD V EGD V VK+L  
Sbjct: 199 EGQEIV-GTVQRLTQFGAFVDV-GGVDGLVHVSEIAWTHVDKPSDAVSEGDQVKVKVLKV 256

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++GKI LSMK       +
Sbjct: 257 DPEKGKISLSMKAAQPGPWE 276



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 602 EIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            ++AA+     S       N I  G V ++++FGAFV      +GLVHISQ+S + +   
Sbjct: 266 SMKAAQPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTP 325

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            +V++EG  V VK+L+ +    ++ LS+K  ++  
Sbjct: 326 QEVLEEGQEVKVKILEMNPSEKRVSLSIKETEEAP 360



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    EAA +         +     KG +VK+ D  A V      DG++ I +LS+  + 
Sbjct: 7   NQEAAEAANQDELDQIVSLKKGDTVKGTIVKLEDNQAVVSIGYKYDGVIPIRELSSG-LD 65

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD-QNTGKPI 698
              + V+ G  V  +++  DD + K+ LS + +D +N  + +
Sbjct: 66  NAEEAVQVGQEVEARIISIDDGKEKLVLSKRAIDSENAWEKL 107


>gi|304317581|ref|YP_003852726.1| Tex-like protein protein-like protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779083|gb|ADL69642.1| Tex-like protein protein-like protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 712

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 94/263 (35%), Gaps = 22/263 (8%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E+        V    + L  A V + K V+GI   + K+  ++      +         +
Sbjct: 467 EALNGVVEDCVNSVGVDLNTASVSLLKYVSGINASIAKNIVEYR-----NEVGQFRNRNE 521

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
            K        T  Q    +  ++ + +  +       R  IL  + K       +L    
Sbjct: 522 LKNVKRLGDATFTQCAGFLRILNGDNIFDST-GVHPERYEILENLLKKFDYDINKLDTKA 580

Query: 551 PRVEIMAIPP---DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            R     +     +++     +G   +  IV +             K       E+    
Sbjct: 581 LREFAYKLEEYGLEKLSQEYDIGLPTLNDIVSELK-----------KPGRDPREELPKPI 629

Query: 608 EMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            M   +T    +      G V  V+DFG FV      DGLVHIS++S   +    DVV  
Sbjct: 630 LMSDVMTIEQLKPGMELMGTVRNVVDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V V+++D D DR +I LSMK
Sbjct: 690 GDIVKVRVIDVDIDRNRISLSMK 712


>gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
 gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
          Length = 486

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V VK++D D +R +I LS+K  D++
Sbjct: 340 QEVMVKVIDIDLERRRISLSVKQADED 366



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|289804102|ref|ZP_06534731.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 348

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 221 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 280

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 281 RKRIALTMR-LDEQPGE 296


>gi|213426885|ref|ZP_03359635.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 779

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|229828596|ref|ZP_04454665.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
           14600]
 gi|229793190|gb|EEP29304.1| hypothetical protein GCWU000342_00660 [Shuttleworthia satelles DSM
           14600]
          Length = 294

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 12/204 (5%)

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
                     G   + ++      + + +  A    +   +H+  ++   +      L  
Sbjct: 60  AQITSLDDGRGNIRLSVNAARHTDAWDQLKDAHSANETLTVHVREQVKGGVVAYLKGLRA 119

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN-IDDDGTVKIASSSLAEIEAAR 607
           F P  ++ A   D + + +G   +V          K++ I+      + S+   E E  R
Sbjct: 120 FIPASQLAASYVDNLADFVGRDLEV----------KIDSIEPAKRRLVLSARAVEQEKKR 169

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
              ++  D  EV  I +G V ++ DFGAFV+     DGLVHISQ+S +RV K  D ++ G
Sbjct: 170 LEQQAKLDALEVGSIVEGTVARLKDFGAFVNIADGLDGLVHISQISLKRVEKVEDALRVG 229

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVD 691
             V VK+    D GK+ LSMK V+
Sbjct: 230 QKVRVKITGMKD-GKVSLSMKAVE 252


>gi|168185953|ref|ZP_02620588.1| protein YhgF [Clostridium botulinum C str. Eklund]
 gi|169295878|gb|EDS78011.1| protein YhgF [Clostridium botulinum C str. Eklund]
          Length = 718

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 13/131 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPE 618
            + +   + +G   ++ I+++             K       E+     +      +  +
Sbjct: 598 VEDLARELEVGVPTLKDIIKEIK-----------KPGRDPREELPKPIFKKGIVDINQLK 646

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +  G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V VK+L+ D
Sbjct: 647 PGMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVKVLEVD 706

Query: 679 D-RGKIKLSMK 688
           + RG+I LSMK
Sbjct: 707 EKRGRISLSMK 717


>gi|187734759|ref|YP_001876871.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
 gi|187424811|gb|ACD04090.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
          Length = 562

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  ++  IPP  +   +G        + E    KVN DD   + ++   + E E 
Sbjct: 121 VEAFLPGSQVDIIPPRDLNEYVGK-------VYEFKIVKVN-DDRKNIVLSRREVIEAER 172

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +  R +  V E +K+ +G V  + DFGAFV   G  DGL+HI+ +S  RV   S+++ 
Sbjct: 173 ADQRQRFLETVKEGDKV-EGIVKNITDFGAFVDLRGM-DGLLHITDMSWGRVNHPSEMLH 230

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G ++ V +L+ D ++ ++ L +K +  N    I
Sbjct: 231 IGQSLEVVILEVDREKERVSLGLKQMTDNPWADI 264



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   SI D  +V  +  GQV K+  FGAFV+  G  DGL+HISQLS + V +  DV+K G
Sbjct: 433 DPWESINDRFKVGDMVTGQVAKIASFGAFVNLDGDIDGLIHISQLSEDHVERVKDVIKVG 492

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           D +  +++  D    +I LS+K V+ +T +
Sbjct: 493 DEITARVIKVDSIERRIGLSIKAVNYDTEQ 522



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
               I     +  + KGQV  +  +GAFV      DG++H+S +S  R +   S+V+K+G
Sbjct: 347 PWADIESRFPIGTVIKGQVRNLTPYGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKG 406

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           D V   +L+   +  ++ L +K ++ +  + I
Sbjct: 407 DEVEAIVLEIKKEDQRVSLGIKQLESDPWESI 438



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            KG+V K++ +GAFV      +GLVH+S+LS  +R+ + SDV+K    +   +L      
Sbjct: 274 VKGRVTKLLPYGAFVELEKGVEGLVHVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKE 333

Query: 681 GKIKLSMKVVDQNTGKPI 698
            KI L ++ ++ N    I
Sbjct: 334 QKISLGVRQLEDNPWADI 351


>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
 gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARNHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EEVMVKVIDIDLERRRISLSLKQADED 366



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|309972958|gb|ADO96159.1| 30S ribosomal protein S1 [Haemophilus influenzae R2846]
          Length = 549

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +  +   S   +  A ++       I  ++    +     +  F P   +   
Sbjct: 80  GETKLSREKAVRHESWIELEKAYEEKATVIGLINGKVKGGFTVELNGVRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  +  +++G     +   V +   K N      V ++  ++ E E ++E  + + ++ E
Sbjct: 140 PAREADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESENSQEREQVLENLVE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            +++ KG V  + ++GAFV   G  DGL+HI+ ++ +RV   S++V  GD V VK+L FD
Sbjct: 192 GSEV-KGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + Q+    I 
Sbjct: 250 KDRTRVSLGLKQLGQDPWAAIA 271



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+       V+ +     +    + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +       ++   +I +   VN 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D +
Sbjct: 279 KLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L +K    N  
Sbjct: 339 RRRISLGLKQCKANPW 354



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      + ID++           +            +  
Sbjct: 316 IHPSKVVNL----GDTVEVMV------LEIDEERRRISLGLKQCKAN----PWTQFAETH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   ++    V   K+GD V   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVL 420

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D  + +I L +K ++++ 
Sbjct: 421 AVDAVKERISLGIKQLEEDP 440



 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +    VV+    GA V   G  +G +    L++E        V  G
Sbjct: 439 DPFNNFVAINKKGAVVSATVVEADAKGAKVELAGGVEGYIRSVDLTSE--------VAVG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS+K  DQ
Sbjct: 491 DVVEAKYTGVDRKSRIVHLSVKAKDQ 516


>gi|317494412|ref|ZP_07952826.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917662|gb|EFV39007.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 778

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +   I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V 
Sbjct: 642 ETMNDLQPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVK 701

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK+++ D  R +I L+M+ +D+  G+
Sbjct: 702 VKVMEVDMQRKRIALTMR-LDEQPGE 726


>gi|271502330|ref|YP_003335356.1| Tex-like protein [Dickeya dadantii Ech586]
 gi|270345885|gb|ACZ78650.1| Tex-like protein [Dickeya dadantii Ech586]
          Length = 779

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQ 710

Query: 680 RGKIKLSMKVVDQN 693
           R +I L+M++ +Q 
Sbjct: 711 RKRIALTMRLDEQP 724


>gi|170022431|ref|YP_001718936.1| RNA-binding S1 domain-containing protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169748965|gb|ACA66483.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 791

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|261823333|ref|YP_003261439.1| hypothetical protein Pecwa_4104 [Pectobacterium wasabiae WPP163]
 gi|261607346|gb|ACX89832.1| Tex-like protein protein-like protein [Pectobacterium wasabiae
           WPP163]
          Length = 777

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|269961758|ref|ZP_06176118.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
 gi|269833541|gb|EEZ87640.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
          Length = 556

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    V  V   GA V      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVADNKKGVLVNATVTAVDAKGATVEIAEGVEGYIRASEVSRDRVEDASLILSAG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DVVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529


>gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977]
 gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
          Length = 481

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +      I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  +     +L+  + +         EF  ++   AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV  GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|114320628|ref|YP_742311.1| RNA-binding S1 domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227022|gb|ABI56821.1| RNA binding S1 domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 782

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+   V    +VVK GD V VK+++ D +
Sbjct: 654 MVLEGTVTNVTNFGAFVDIGVHQDGLVHISALAERFVRDPHEVVKAGDIVKVKVMEVDLE 713

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSM+ +D   G+
Sbjct: 714 RKRIGLSMR-LDDEPGE 729


>gi|153950179|ref|YP_001402930.1| hypothetical protein YpsIP31758_3982 [Yersinia pseudotuberculosis
           IP 31758]
 gi|152961674|gb|ABS49135.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 791

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|303241879|ref|ZP_07328373.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302590553|gb|EFL60307.1| hydroxymethylbutenyl pyrophosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 685

 Score = 95.7 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S + ++ A +     R  +++ ++  +  S   +  F P      I    ++ +     K
Sbjct: 385 SWDEIIKAYEDKTPIRAIVVDVVNGGVIASAKGVRIFVPAS---QISDKFVKELNEFLKK 441

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
            I   +      +  +D     + S+ +   E   +  ++  D  EV KIY G V  + D
Sbjct: 442 PINVRI------IEYNDKKRKLVGSARVLLEEEKAKKSKAFWDEVEVGKIYSGVVKSLTD 495

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           FG FV   G  DGL+HIS+LS  R+   S+VVK GD V V +L+F  ++GKI L  +  +
Sbjct: 496 FGVFVDI-GGVDGLIHISELSWSRIKHPSEVVKVGDKVQVSILEFKKEKGKISLGYRKTE 554

Query: 692 QNTG 695
            N  
Sbjct: 555 DNPW 558



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                ++  +V  +   +V++   FG FV      DGLVHISQ+S++R+AK  DV+  G 
Sbjct: 557 PWVKASEKYKVGDVVNVKVLRFAPFGTFVELEEGIDGLVHISQISSKRLAKPEDVLTAGM 616

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQ 692
            V  K+L+FD +  KI LS+K V  
Sbjct: 617 KVDAKILEFDLENKKISLSIKEVKP 641



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           G      ++E+   K++  D    K+  +         +             +  G+V+ 
Sbjct: 261 GASTPDWVIEEVIKKMS--DLNNQKVEMNEKESEMNFADAFEKSMVTLRDGDVVTGKVIG 318

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
                 FV      DG++ I + + E   K    +K GD + V +    D  G + LS K
Sbjct: 319 FNSNEIFVDLGYKSDGIIPIEEYTDEPDFKIESEIKVGDKIEVYVKRVNDGEGNVLLSKK 378

Query: 689 VVD 691
            +D
Sbjct: 379 HLD 381


>gi|308069530|ref|YP_003871135.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
 gi|305858809|gb|ADM70597.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
          Length = 408

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +R +V++        ++  V ++   + E E     ++ + ++ 
Sbjct: 144 VERHFVEDFSDYKGRTLRVVVKELDR-----ENNKVILSQKDVLEAEFEANKLKVMAELK 198

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I  G V ++  FGAFV   G  DGLVH+S+++   V K SD V EGD V VK+L  
Sbjct: 199 EGQEIV-GTVQRLTQFGAFVDV-GGVDGLVHVSEIAWTHVDKPSDAVSEGDQVKVKVLKV 256

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++GKI LSMK       +
Sbjct: 257 DPEKGKISLSMKAAQPGPWE 276



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 602 EIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            ++AA+     S       N I  G V ++++FGAFV      +GLVHISQ+S + +   
Sbjct: 266 SMKAAQPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTP 325

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            +V++EG  V VK+L+ +    ++ LS+K  ++  
Sbjct: 326 QEVLEEGQEVKVKILEMNPSEKRVSLSIKETEEAP 360



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +    EAA +         +     KG +VK+ D  A V      DG++ I +LS+  + 
Sbjct: 7   NQEAAEAANQDELDQIVSLKKGDTVKGTIVKLEDNQAVVSIGYKYDGIIPIRELSSG-LD 65

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD-QNTGKPI 698
              + V+ G  V  +++  DD + K+ LS + +D +N  + +
Sbjct: 66  NAEEAVQVGQEVEARIISIDDGKEKLVLSKRAIDSENAWEKL 107


>gi|289208391|ref|YP_003460457.1| ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
 gi|288944022|gb|ADC71721.1| ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
          Length = 556

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)

Query: 448 LMDAGVPISKPVAGIAMGLVKDG--DDFIILSDISGDEDHLGHMDFKVAGTDS---GITA 502
           L    + ++  V  +  GL  +G       ++D    E  +G +      T     G T 
Sbjct: 24  LSATVIEVTPDVVVVNAGLKSEGVIPTEQFMNDEGELEVKVGDVVEVALETPEDGFGETR 83

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           M  +      + + +  A+++ +     I  ++    +     +  F P      +    
Sbjct: 84  MSREKAKRAKAWDRLEGAMEEEQYVTGKISGKVKGGYTVELGDIRAFLPGSL---VDVRP 140

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   + GK +   + +   + N      V ++  ++ E E + E    + ++ E   +
Sbjct: 141 VRDTAYLEGKELEFKLIKLDRRRN-----NVVVSRRAVVEQEYSAEREELLKNLQEGA-V 194

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAF+   G  DGL+HI+ ++ +RV   SDVV+ G  V VK+L FD +R 
Sbjct: 195 VKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSDVVEIGQEVEVKVLKFDRERM 253

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K + ++  + I
Sbjct: 254 RVSLGLKQLGEDPWENI 270



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT          G+V  + D+G FV      +GLVH+S++    +      VV  
Sbjct: 265 DPWENITRRYPTGTRIFGKVTNITDYGCFVEIEDGVEGLVHVSEMDWTNKNVNPGKVVAI 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +LD D +R +I L MK    N    
Sbjct: 325 GDEVEVMILDLDEERRRISLGMKQCQSNPWDD 356



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 93/258 (36%), Gaps = 34/258 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            +  G+VK+  D+    D+ G +   H+  M +K     S +  +  ++++  +  +   
Sbjct: 193 AVVKGIVKNLTDYGAFLDLGGIDGLLHITDMAWKRVKHPSDVVEIGQEVEVKVLKFD--- 249

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                  R R+ +   + ++  +    +    P    +      I +      I  G + 
Sbjct: 250 -------RERMRVSLGLKQLGEDPWENITRRYPTGTRIFGKVTNITDYGCFVEIEDGVEG 302

Query: 574 IRGIVEQTGAK--------VNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPE 618
           +  + E             V I D+  V I               +              
Sbjct: 303 LVHVSEMDWTNKNVNPGKVVAIGDEVEVMILDLDEERRRISLGMKQCQSNPWDDFAANHN 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDF 677
             +  +GQ+  + DFG FV   G  DGL+H+S LS      +     K+GD V   +L  
Sbjct: 363 RGEKVRGQIKSITDFGVFVGLDGGIDGLIHLSDLSWHEAGEEAIRNFKKGDEVEAVVLSV 422

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R +I L +K +D++ 
Sbjct: 423 DPERERISLGLKQLDRDP 440



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+   +         I KG V +V    A +      DG++  + +S +RV     V+  
Sbjct: 438 RDPFSNFVAEHTKGSIVKGTVKEVDAKAAVIELADGIDGILRAADISQDRVEDARTVLNV 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           G+ V  K +  D + + I LS+K  D+     +V
Sbjct: 498 GEEVEAKFMGVDKKTRAISLSIKAKDRAEEAEMV 531


>gi|148653385|ref|YP_001280478.1| 30S ribosomal protein S1 [Psychrobacter sp. PRwf-1]
 gi|148572469|gb|ABQ94528.1| SSU ribosomal protein S1P [Psychrobacter sp. PRwf-1]
          Length = 559

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 476 LSDISGDEDHLGH-MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           L D    E  +G  +D  V   D+G+  T +  +      + N +    +  +  +  I 
Sbjct: 55  LDDNGELEVAVGDSVDVVVEAVDNGMGQTLLSREKAKRVETWNALEKLFEGDEIVKGIIS 114

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           +++    +     +  F P      +    IR+   + GK +   + +   K N      
Sbjct: 115 SKVKGGFTVDVGSVRAFLPGSL---VDVRPIRDTTHLEGKELEFKIIKLDQKRN-----N 166

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++  ++ E E + E    +  + E  ++ +G V  + D+GAFV   G  DGL+HI+ +
Sbjct: 167 VVVSRKAVMEAENSAEREELLNKLEEGIEV-EGIVKNLTDYGAFVDL-GGIDGLLHITDM 224

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +  R+   S+VV+ G  + VK+L FD +R ++ L +K +  +    +
Sbjct: 225 AWRRIKHPSEVVEVGQDLKVKVLKFDRERNRVSLGLKQLGTDPWDNV 271



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     V  I K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNVGGTYPVGSIVKARVTNLTDYGCFAEISDGIEGLVHVSEMDHTNKNIHPSKVVQI 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +LD D+ R +I L +K    N  + 
Sbjct: 326 GDEVDVMILDIDEERRRISLGIKQTLPNPWEE 357



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V  V   GA +      +G +  S++  ++V   +  +  GD+V  K++  D + 
Sbjct: 454 IVTGTVKDVDAKGATITLADEVEGYLRASEIQRDKVEDATKHLNVGDSVEAKIISVDRKS 513

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D+   +
Sbjct: 514 RGISLSIKAKDEAEER 529



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +   G +V   I       ++ID++                           
Sbjct: 317 IHPSKVVQI---GDEVDVMI-------LDIDEERRRISLGIKQTLPN----PWEEFDKKY 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +      G +  + DFG F+   G  DGLVH+S +S      +      +GDTV   +L 
Sbjct: 363 DRGDKLTGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEAGEEAIRNYNKGDTVEAMVLS 422

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +  +I L +K +  + 
Sbjct: 423 VDAEANRISLGIKQLSSDP 441


>gi|51598056|ref|YP_072247.1| hypothetical protein YPTB3766 [Yersinia pseudotuberculosis IP
           32953]
 gi|186897256|ref|YP_001874368.1| RNA-binding S1 domain-containing protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51591338|emb|CAH23004.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186700282|gb|ACC90911.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 791

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|22127783|ref|NP_671206.1| hypothetical protein y3913 [Yersinia pestis KIM 10]
 gi|45439997|ref|NP_991536.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001]
 gi|108809326|ref|YP_653242.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
 gi|108814091|ref|YP_649858.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
 gi|145597384|ref|YP_001161459.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
 gi|150260816|ref|ZP_01917544.1| predicted transcriptional accessory protein [Yersinia pestis
           CA88-4125]
 gi|162421540|ref|YP_001608058.1| hypothetical protein YpAngola_A3743 [Yersinia pestis Angola]
 gi|165928028|ref|ZP_02223860.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936122|ref|ZP_02224691.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010602|ref|ZP_02231500.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213288|ref|ZP_02239323.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398728|ref|ZP_02304252.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418783|ref|ZP_02310536.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425730|ref|ZP_02317483.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468692|ref|ZP_02333396.1| hypothetical protein YpesF_12509 [Yersinia pestis FV-1]
 gi|218927345|ref|YP_002345220.1| hypothetical protein YPO0134 [Yersinia pestis CO92]
 gi|229836385|ref|ZP_04456552.1| predicted transcriptional accessory protein [Yersinia pestis
           Pestoides A]
 gi|229839990|ref|ZP_04460149.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842071|ref|ZP_04462226.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904628|ref|ZP_04519739.1| predicted transcriptional accessory protein [Yersinia pestis
           Nepal516]
 gi|270488159|ref|ZP_06205233.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294502224|ref|YP_003566286.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
 gi|21960912|gb|AAM87457.1|AE013996_2 hypothetical protein y3913 [Yersinia pestis KIM 10]
 gi|45434852|gb|AAS60413.1| Predicted RNA binding protein, Contains S1 domain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108777739|gb|ABG20258.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
 gi|108781239|gb|ABG15297.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
 gi|115345956|emb|CAL18820.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209080|gb|ABP38487.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
 gi|149290224|gb|EDM40301.1| predicted transcriptional accessory protein [Yersinia pestis
           CA88-4125]
 gi|162354355|gb|ABX88303.1| conserved hypothetical protein [Yersinia pestis Angola]
 gi|165915736|gb|EDR34344.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165919977|gb|EDR37278.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990692|gb|EDR42993.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205586|gb|EDR50066.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962777|gb|EDR58798.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051232|gb|EDR62640.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055420|gb|EDR65214.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229678746|gb|EEO74851.1| predicted transcriptional accessory protein [Yersinia pestis
           Nepal516]
 gi|229690381|gb|EEO82435.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696356|gb|EEO86403.1| predicted transcriptional accessory protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706453|gb|EEO92460.1| predicted transcriptional accessory protein [Yersinia pestis
           Pestoides A]
 gi|262360303|gb|ACY57024.1| hypothetical protein YPD4_0115 [Yersinia pestis D106004]
 gi|270336663|gb|EFA47440.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
 gi|294352683|gb|ADE63024.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
 gi|320013270|gb|ADV96841.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 791

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|323498283|ref|ZP_08103285.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
 gi|323316711|gb|EGA69720.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
          Length = 556

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  AQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLETLQEGAEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 439 DPFNAYVAENKKGALVNGTVTAVDAKGATIELVEGVEGYLRASEVSRDRIEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D+V  K    D + + I LS+K  D+   + 
Sbjct: 499 DSVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 125/355 (35%), Gaps = 52/355 (14%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPIRDT-------AHLENKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    L  +  G  +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDEL----LETLQEGAEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I   ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEIQVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAI------PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
              +++   +  + T RV  +          + +  ++ +               VN+ D
Sbjct: 267 WVAIAKRYPEGHKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 590 DGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           +  V +               +      +S  +         G++  + DFG F+   G 
Sbjct: 327 EVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGG 386

Query: 643 RDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            DGLVH+S +S   V     V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 387 IDGLVHLSDISWN-VPGEEAVREYKKGDEISAVVLAVDAERERISLGVKQMENDP 440


>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
 gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
          Length = 250

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 10/251 (3%)

Query: 296 EDIQAKVVRT-VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + ++ +  R  V      R+DGR ++  R    + G ++   GS+    GDT+ IV V  
Sbjct: 9   QALEEEPHRAPVFSSDGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSV-F 67

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G RE  +  ++ S   R +  + Y     AT    +MGA +  E     +  +++   + 
Sbjct: 68  GPRES-KKAEAFSDAGRLNCNVKYC--SFATPVRGKMGAANAEERDLSSMLYKSVVGAVD 124

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
                  T+ + + + +S G      V  +SLAL DAG+ +   VA ++   ++      
Sbjct: 125 LRTFPKTTVDVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVSASSIQ----GQ 180

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           +L D S  E++       VA   S    +      G  S +    +L+        I + 
Sbjct: 181 VLLDPSTSEENCEDGSLMVAYMPSR-KEITQVTMTGEWSSSRASESLELCLDACAKIGDV 239

Query: 535 MSKVLSESRLQ 545
           M   L E+  Q
Sbjct: 240 MRSCLKEAAAQ 250



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 20  TGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGKIPGGYL 78
           TG + R + G+  A  G+T V+ +V   R  K  + F     +N   +  +      G  
Sbjct: 43  TGAV-RAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNCNVKYCSFATPVRG-- 99

Query: 79  RRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
            +       E  +S M+ +S+          K    V   V+Q      P +V+   AS 
Sbjct: 100 -KMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQSGGGDLPVIVTC--ASL 156

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEAN 193
           AL  +G+     V       I GQ +L+P   E+    GSL +    ++  +  V +   
Sbjct: 157 ALADAGIVLYDLVAAVSASSIQGQVLLDPSTSEENCEDGSLMVAYMPSRKEITQVTMTG- 215

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + S     +++    + C  + + +    K  A +
Sbjct: 216 EWSSSRASESLELCLDACAKIGDVMRSCLKEAAAQ 250


>gi|255660000|ref|ZP_05405409.1| protein YhgF [Mitsuokella multacida DSM 20544]
 gi|260847753|gb|EEX67760.1| protein YhgF [Mitsuokella multacida DSM 20544]
          Length = 733

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   I +G V  + DFGAFV      DGL+HIS+L+  RV    +VV  G  + V ++
Sbjct: 652 ELKPGTILRGTVRNITDFGAFVDIGLHEDGLIHISELAKRRVKHPLEVVSIGQVLRVMVI 711

Query: 676 DFDD-RGKIKLSMKVVDQNT 694
             D+ RG+I LS+K V +  
Sbjct: 712 SVDEKRGRIGLSLKRVPEEA 731


>gi|213579893|ref|ZP_03361719.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 443

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+ + + GK +   V +   K N      V ++  ++ E E + E  + + ++ 
Sbjct: 22  VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLENLQ 76

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F
Sbjct: 77  EGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKF 134

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R ++ L +K + ++    I 
Sbjct: 135 DRERTRVSLGLKQLGEDPWVAIA 157



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 323 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 382

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 383 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 417



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 83  GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRE 137

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 138 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 197

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 198 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 253

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 254 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 312

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 313 ERISLGVKQLAEDP 326



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 108 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 167

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 168 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 227

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 228 ISLGLKQCKSNPWQ 241


>gi|188588993|ref|YP_001921151.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499274|gb|ACD52410.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 635

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
              + I    E    K+   D    K++ S    +    E ++          I  G+VV
Sbjct: 516 KNIEDILKKDEMIEVKIIALDKENKKLSLSRKELLPKPWENVKEKYPE---GSIVLGKVV 572

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           ++ DFGAF+      DGLVHIS++S  R+A  S+V+  G+ V  K+L+ D +  ++ LS+
Sbjct: 573 RINDFGAFIELEPGVDGLVHISKISFNRIAHPSEVLSVGEEVKAKILEVDEENKRVSLSI 632

Query: 688 KVV 690
           K +
Sbjct: 633 KDI 635



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQI-RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           + IP  QI         K I  ++E      + ++   V  +   L E+    E    I 
Sbjct: 415 IFIPASQIDVKFTKDKSKYINQVLEVKLIDYSTEEHKKVIASRRVLLEVIKETEE-EKIW 473

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +   V  + K +V +   FGAF+      DGL+H+SQ+S   V    D++K+ + + VK+
Sbjct: 474 ESLNVGDVIKAEVKRFTKFGAFLDV-NGIDGLLHLSQISWNHVKNIEDILKKDEMIEVKI 532

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPI 698
           +  D +  K+ LS K +     + +
Sbjct: 533 IALDKENKKLSLSRKELLPKPWENV 557


>gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus]
          Length = 481

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +      I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  +     +L+  + +         EF  ++   AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE-------AAREMI 610
            V       +  + E +   ++       + D+ TV++    +              +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+LS   V     VV  GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|126307880|ref|XP_001363005.1| PREDICTED: similar to pol polyprotein [Monodelphis domestica]
          Length = 1196

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR--- 643
           I D            +    + + R   + P + +IY G+V  +M FG FV   G R   
Sbjct: 208 IKDRKDRDKYGEKNNDRWRDKHVDRPPPEEPSIGEIYNGKVTSIMQFGCFVQLEGLRKRW 267

Query: 644 DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +GLVHIS+L  E RVA  +DVV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 268 EGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT-KTSLSMKDVDQDTGEDL 322


>gi|332972994|gb|EGK10934.1| YhgF like protein [Kingella kingae ATCC 23330]
          Length = 755

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 64/131 (48%), Gaps = 13/131 (9%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKI 622
           R  V Q  A   ID+   +      LAE+E      R            +     EV  I
Sbjct: 583 REKVSQIKATDFIDERFGLPTIMDILAELEKPARDPRGEFKMASFTEGVNEISDLEVGMI 642

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVHIS LS + VA   DVVK GD V VK+L+ D  R 
Sbjct: 643 LEGVVSNVANFGAFVDIGVHQDGLVHISMLSNKFVADPRDVVKAGDVVKVKVLEVDAARK 702

Query: 682 KIKLSMKVVDQ 692
           +I L+M++ D+
Sbjct: 703 RIALTMRLEDE 713


>gi|257437823|ref|ZP_05613578.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium
           prausnitzii A2-165]
 gi|257199746|gb|EEU98030.1| hydroxymethylbutenyl pyrophosphate reductase [Faecalibacterium
           prausnitzii A2-165]
          Length = 636

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +ID +          AE          + +   +   +   VV +  FGAFV      DG
Sbjct: 529 DIDTENHKVSLGYKKAEDN----PWEQLKNNYPIGSTFHAPVVSLTKFGAFVRILPGVDG 584

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS++S +RV K SD +K GD V VKLLD D D+ +I LSMK +  +  +
Sbjct: 585 LVHISEISNDRVEKVSDALKVGDMVDVKLLDVDFDKKRISLSMKALLNDDAE 636



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G+  +             +  A +  +     +       +  +  
Sbjct: 350 DELDLIVEKVMDQDGVIQLSRKKLASRKGMEEIAKAAESGEVVEGDVTEFNKGGVVVNVK 409

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F PR +      +    ++G   +++  + E +G K+       V   +   AE  
Sbjct: 410 GVKVFVPRSQATMRRDEDYTALVGQHVQLV--VTECSGRKI-------VGSINKVTAEQN 460

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+          EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV
Sbjct: 461 KAK--REEFWANVEVGKTYTGVVKSLTSYGAFVDI-GGVDGLCHISELSWNRIKHPSEVV 517

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GDT+ V + D D +  K+ L  K  + N  + +
Sbjct: 518 SVGDTIEVYVKDIDTENHKVSLGYKKAEDNPWEQL 552



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++    +++     +     +  S         I KG V  +      V     + G
Sbjct: 268 SIIEEVLNSMSAEINDSMSFEEMLNASEEKRVHAGSIVKGIVTSISANEIQVDIGAKQTG 327

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV 690
            V +S+L+ +  AK  D+VK GD + + +    D  G I+LS K +
Sbjct: 328 FVKLSELTDDSSAKVEDLVKVGDELDLIVEKVMDQDGVIQLSRKKL 373


>gi|89257160|ref|YP_514522.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           LVS]
 gi|254366882|ref|ZP_04982920.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
 gi|290953358|ref|ZP_06557979.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313405|ref|ZP_06804012.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144991|emb|CAJ80351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           LVS]
 gi|134252710|gb|EBA51804.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
          Length = 556

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   + ++           +E    K++   +  V    + + E  +      ++ +   
Sbjct: 140 PIKDVAHLEYKD-------IELKVVKIDTKRNNIVVSRKAVIEENNS--GDRDAMLEKIS 190

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 191 EGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSITLSIKAVDED 526



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 EVEAVLVSVNTDLERIALSMKQLSEDP 439



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVCAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRPNPW 354


>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++L+ D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLEVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EEVMVKVIDIDLERRRISLSLKQADED 366



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|330953535|gb|EGH53795.1| 30S ribosomal protein S1 [Pseudomonas syringae Cit 7]
          Length = 494

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            H+         G T +  +         ++  A    +  +  I  ++    +     +
Sbjct: 1   VHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVNGI 60

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   + GK +   V +   K N      V ++  S+ E E +
Sbjct: 61  RAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAENS 112

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  
Sbjct: 113 AEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNV 170

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 171 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 203



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 92  LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 151

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 152 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 211

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 212 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 271

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 272 RRRISLGIKQCKSNPWED 289



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 372 DPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 431

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    K  +
Sbjct: 432 EEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 464



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 249 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 294

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 295 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 353

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 354 SVDPERERISLGIKQLESDP 373


>gi|311068805|ref|YP_003973728.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
 gi|310869322|gb|ADP32797.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
          Length = 382

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +  IV      V +D D    I S      +      +      
Sbjct: 132 VEAHFVEDFTDYKGRTLTLIV------VELDRDKNRVILSHRAVVEKEQTNKKQEFLQTL 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K         I
Sbjct: 245 DRDNERISLSIKETLPGPWSQI 266



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSQIGEKVKKGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            V VK+LD ++   +I LSM+ +++  
Sbjct: 322 DVKVKVLDVNEGEERISLSMRELEEAP 348



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVVK 
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKA 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|213586558|ref|ZP_03368384.1| putative transcriptional accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 502

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 378 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 437

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 438 RKRIALTMR-LDEQPGE 453


>gi|254368625|ref|ZP_04984641.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121528|gb|EDO65719.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 556

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 80  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   + ++           +E    K++   +  V    + + E  +      ++ +   
Sbjct: 140 PIKDVAHLEYKD-------IELKVVKIDTKRNNIVVSRKAVIEENNS--GDRDAMLEKIS 190

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + KG V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  + VK++ FD
Sbjct: 191 EGSVLKGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 250 KEKQRISLGIKQLGEDPWLNIA 271



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     +  G+V KV D GA V        DG + IS++S E      D + 
Sbjct: 438 DPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELS 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 498 EGQEVEARIINIDAKKRSITLSIKAVDED 526



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 169 SRKAVIEENNSGDRDAMLEKISEGSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 228

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 229 SHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 289 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 348

Query: 690 VDQNTG 695
              N  
Sbjct: 349 CRPNPW 354



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 353 PWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 412

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 413 EVEAVLVSVNTDLERIALSMKQLSEDP 439


>gi|150388634|ref|YP_001318683.1| RNA-binding S1 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948496|gb|ABR47024.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 728

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +                        +  +++ +  G V  V+DFGAFV     +DG
Sbjct: 622 DIMQEVKKPGRDPREEMPMPIFRSDVLKMEDLKLDMVMTGTVRNVVDFGAFVDIGVKQDG 681

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVH+SQLS + V    DVV  GD V VK++  D +RGK+ LSMK
Sbjct: 682 LVHVSQLSNKFVKNPMDVVSVGDEVEVKIIGIDVERGKVSLSMK 725


>gi|94266546|ref|ZP_01290232.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
 gi|93452821|gb|EAT03347.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
          Length = 570

 Score = 95.7 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 9/238 (3%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            LV  GD      DI+   +  G ++ KV  T      ++     GGI  +       + 
Sbjct: 47  VLVDIGDKSEGEIDITEFRNEEGEIEVKVGDTFE--VYVEKREPEGGIKLSRERAIGIKV 104

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI--GMGGKVIRGIVEQTG 582
                 I    S +    R+           + +P     + I       +   I E   
Sbjct: 105 WEEIARIQEADSTIAG--RIDSRVKGGLSVDIGVPAFLPYSQIDLRPVRDLDALIGESFD 162

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            K+   +     +  S  A +E AR+ +R+      E  ++  G V  + D+G FV   G
Sbjct: 163 FKILKFNRRRNNVVISRRAIMEEARQQLRNEMRGTLEEGQVLTGTVTNITDYGVFVDLGG 222

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
             DGL HI+ LS  RV+  S + K GD + VK+L +D    K+ L +K +  +  + I
Sbjct: 223 M-DGLCHITDLSWGRVSHPSKMFKVGDEIQVKVLKYDQENDKVSLGVKQLKSDPWETI 279



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V     G+VV + D+GAFV      +GLVHIS++S  ++    S +V  
Sbjct: 274 DPWETIQQRYPVGAKVPGKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVTV 333

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GD V V +L+ D    +I L MK +  N  
Sbjct: 334 GDEVEVSVLNVDPEAKRISLGMKQLQPNPW 363



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +   +    +G++  V DFG FV      +GL+H+S+LS E+V     +   G
Sbjct: 448 DPWEAAVEKYAIGTKLEGKITNVTDFGVFVELEEGIEGLIHVSELSKEKVETPVGLYNVG 507

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           DT+  ++++   +  KI LS+K +     +
Sbjct: 508 DTIEARVINVSAKDRKIGLSIKALSGEDEE 537



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      I +G++  + DFG F+      DGL+H+S LS  ER+    +   +G
Sbjct: 362 PWDMVAENYPAGSIIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKG 421

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +T+   +L  D +  +  L +K +  +  +  V
Sbjct: 422 ETIQAVVLKIDKENERFSLGIKQLQPDPWEAAV 454


>gi|325272397|ref|ZP_08138792.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324102474|gb|EGB99925.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 774

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQV 627
               K   D+   +   +  L E++      R                  E   I +G V
Sbjct: 599 --DPKRFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|331674895|ref|ZP_08375652.1| protein YhgF [Escherichia coli TA280]
 gi|331067804|gb|EGI39202.1| protein YhgF [Escherichia coli TA280]
          Length = 773

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M++ +Q +
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPS 726


>gi|213423738|ref|ZP_03356718.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 349

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LST+ V     VVK GD V VK+L+ D  
Sbjct: 225 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQ 284

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 285 RKRIALTMR-LDEQPGE 300


>gi|322385171|ref|ZP_08058818.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
 gi|321270795|gb|EFX53708.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
          Length = 400

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVVEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAAAERVSLSIKALEERPAQE 357


>gi|291228613|ref|XP_002734274.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8-like
           [Saccoglossus kowalevskii]
          Length = 1199

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 5/93 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVK 665
            R+    PE+  +Y G++  +M FG FV   G R   DGLVHISQL  E RV+  ++VV 
Sbjct: 233 DRAPPADPEIGHVYDGKIASIMKFGCFVQLEGLRKRCDGLVHISQLRREGRVSDVNEVVH 292

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +G  V VK+L      ++ LSMK VDQ+TG+ +
Sbjct: 293 KGQKVKVKVLSIVGA-RVSLSMKDVDQDTGEDL 324


>gi|312198706|ref|YP_004018767.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
 gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
          Length = 493

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS         +I KG V  +++FGAFV 
Sbjct: 181 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLAKGQIRKGVVSSIVNFGAFVD 240

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 241 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWR 298



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + ++  G
Sbjct: 258 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRQFARTHAIGQVVPG 312

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D DR +I 
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRIS 372

Query: 685 LSMKVVDQNTG 695
           LS+K  ++   
Sbjct: 373 LSLKQANEAAA 383



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 50  DIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKEDK 109

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 110 EGRLILSKKRAQ 121


>gi|223044427|ref|ZP_03614460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|314932730|ref|ZP_07840100.1| general stress protein 13 [Staphylococcus caprae C87]
 gi|222442216|gb|EEE48328.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|313654560|gb|EFS18312.1| general stress protein 13 [Staphylococcus caprae C87]
          Length = 134

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
 gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
          Length = 489

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EEVMVKVIDIDLERRRISLSVKQADED 366



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|49473769|ref|YP_031811.1| 30S ribosomal protein S1 [Bartonella quintana str. Toulouse]
 gi|49239272|emb|CAF25593.1| 30s ribosomal protein s1 [Bartonella quintana str. Toulouse]
          Length = 566

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    I  E     + +R+    F+       +  D     +      IR I +
Sbjct: 91  SREKARREESWIRLEEK-FNAGARVDGVIFSQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QT-------GAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            +         ++   D     I  S    +E +R   RS      E N+I +G V  + 
Sbjct: 150 VSPLMHNSQSFEILKMDRRRGNIVVSRRTVLEESRAEQRSEIVQNLEENQIVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G T+ V+++  + D  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILNIGQTIKVQIIRINQDTHRISLGMKQL 268

Query: 691 DQNTGKPI 698
           + +  + I
Sbjct: 269 ESDPWESI 276



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI+    V K   G V  + D+G FV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWESISARYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNIHPGKLLST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K   +N  
Sbjct: 331 SQEVEVVVLEIDPSKRRISLGLKQTFENPW 360



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLESDPWESISARYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K NI     +  +      +                       +  +   VN  
Sbjct: 313 SEMSWTKKNIHPGKLLSTSQEVEVVVLEIDPSKRRISLGLKQTFENPWVAFANKFPVNSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  D   +GD V   +LD D ++
Sbjct: 373 IEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDVDIEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 43.7 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 576 GIVEQTGAKVNIDDD----GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
            IV+     V+I+ +    G  +++S  + E  AA E+ R          +   +V  + 
Sbjct: 419 DIVKAVVLDVDIEKERISLGIKQLSSDKVGEAAAAGELRRG--------SVVTCEVTAIN 470

Query: 632 DFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
           D G  V       +  +  + L+ +R  +  +    G  V   +  FD + + + +S+K 
Sbjct: 471 DNGIDVKLTNHNLETTIRRADLARDRDEQRPERFSIGQRVDAHITAFDKKTRKLSVSIKA 530

Query: 690 VDQNTGKPIV 699
           ++   GK  V
Sbjct: 531 LEIAEGKEAV 540


>gi|28378535|ref|NP_785427.1| 30S ribosomal protein S1 [Lactobacillus plantarum WCFS1]
 gi|254556749|ref|YP_003063166.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
 gi|300767480|ref|ZP_07077392.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180692|ref|YP_003924820.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271371|emb|CAD64276.1| ribosomal protein S1 [Lactobacillus plantarum WCFS1]
 gi|254045676|gb|ACT62469.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
 gi|300495299|gb|EFK30455.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046183|gb|ADN98726.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 429

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    G+ +   +      + I+      I S      +             
Sbjct: 148 IDDHYVEDLNAYKGQELELKI------IEIEPSENRLILSHRAVVEKQREAQREEALKTL 201

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G+V ++ +FGAFV   G  DGLVH+S++S ERV K +DV+K G  V VK+L  
Sbjct: 202 QAGDVVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYERVEKPADVLKVGQEVTVKILSV 260

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D DR ++ LS+K       
Sbjct: 261 DADRERVSLSIKATLPEPW 279



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    I +      +  G+V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G
Sbjct: 277 EPWDGIEEKAPQGAVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVG 336

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             + VK+LD   D  ++ LS+K +++  
Sbjct: 337 QEIKVKVLDVRPDEKRLALSIKALEEKP 364


>gi|331270412|ref|YP_004396904.1| RNA binding S1 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329126962|gb|AEB76907.1| RNA binding S1 domain protein [Clostridium botulinum BKT015925]
          Length = 722

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVP 617
             + +   +G+G   +  I+++             K       E+     +      +  
Sbjct: 601 KVETLAEKLGIGVPTLEDIIKEIK-----------KPGRDPREELPKPIFKKGIVDINQL 649

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V V++L+ 
Sbjct: 650 KPDMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDVVEVRVLEV 709

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I LSMK
Sbjct: 710 DEKRGRISLSMK 721


>gi|259503206|ref|ZP_05746108.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
 gi|259168863|gb|EEW53358.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
          Length = 413

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    G+ +   +      + I+      I S          +    I    
Sbjct: 146 ITDHYVEDLNQFKGQKLEFKI------IEIEPSENRLILSHKEIVKAEHEQAAEKIFAEL 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G+V ++ +FGAFV   G  DGLVH+S++S + V K SDV+  G  V VK+L  
Sbjct: 200 QAGDVVEGKVARMTNFGAFVDL-GGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSV 258

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D DR +I LS+K         I
Sbjct: 259 DPDRERISLSIKQTLPGPWDDI 280



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +         G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G 
Sbjct: 276 PWDDIEEKAPAGSTLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQ 335

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V VK+L+ D +R ++ LSMK +++  
Sbjct: 336 EVQVKVLNVDPERQRLGLSMKALEERP 362


>gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis]
          Length = 489

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FG
Sbjct: 162 YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFG 221

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 222 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQED 280

Query: 694 TGK 696
             +
Sbjct: 281 PWR 283



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       V +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 280 DPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + V VK++D D +R +I LS+K  D++
Sbjct: 340 EDVMVKVIDIDLERRRISLSVKQADED 366



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VV+ GD +   +L   D 
Sbjct: 35  DIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|251778389|ref|ZP_04821309.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243082704|gb|EES48594.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 635

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
              + I    E    K+   D    K++ S    +    E ++          +  G+VV
Sbjct: 516 KNIEDILKKGEMIEVKIIALDKENKKLSLSRKELLPKPWENVKEKYPE---GSVVLGKVV 572

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           ++ DFGAF+      DGLVHIS++S  R+A  S+V+  G+ V  K+L+ D +  ++ LS+
Sbjct: 573 RINDFGAFIELEPGVDGLVHISKISFNRIAHPSEVLSVGEEVKAKILEVDEENKRVSLSI 632

Query: 688 KVV 690
           K +
Sbjct: 633 KDI 635



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQI-RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           + IP  QI         K I  ++E      + ++   V  +   L E+    E    I 
Sbjct: 415 IFIPASQIDVKFTKDKSKYINQVLEVKLIDYSTEEHKKVIASRRVLLEVIKETEE-EKIW 473

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +   +  + K +V +   FGAF+      DGL+H+SQ+S   V    D++K+G+ + VK+
Sbjct: 474 ESLNIGDVIKAEVKRFTKFGAFLDV-NGIDGLLHLSQISWNHVKNIEDILKKGEMIEVKI 532

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPI 698
           +  D +  K+ LS K +     + +
Sbjct: 533 IALDKENKKLSLSRKELLPKPWENV 557


>gi|262364253|gb|ACY60810.1| hypothetical protein YPD8_0120 [Yersinia pestis D182038]
          Length = 506

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 366 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 425

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 426 RKRIALTMR-LDEQPGE 441


>gi|170720565|ref|YP_001748253.1| 30S ribosomal protein S1 [Pseudomonas putida W619]
 gi|169758568|gb|ACA71884.1| ribosomal protein S1 [Pseudomonas putida W619]
          Length = 558

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 66  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLETLQEGQQV-KGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD V V++L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAI 270



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRSVLEAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNK 621
               +    ++     VN+ D+  V++               +   +   +IT       
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAITARYPEGT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             + +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 279 RVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCKSNPWED 356



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V +V   GA V      +  +  S++S +RV    +V+KEG+ +  K++  D + 
Sbjct: 453 IVKGIVKEVDAKGAIVTLADDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKS 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D    +  +
Sbjct: 513 RVISLSIKSKDDAEEREAI 531



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 316 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S     +   V   K+GD +   +L
Sbjct: 362 NKGDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGE-EAVRRFKKGDELETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGIKQLEDDP 440


>gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1-like protein [Streptosporangium roseum DSM
           43021]
 gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM
           43021]
          Length = 500

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 31/268 (11%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
             +A I + +    D  I+   +   +     +D  +     G+   +       +    
Sbjct: 24  DFLAAIDLTIKYFNDGDIVEGTVVKVDRDEVLLD--IGYKTEGVIPSRELSIKHDVDPAD 81

Query: 517 MVMALQQAKRGRLHILNEMSK-VLSESRLQLGEFTPRVEIMA----IPPDQIRNV----- 566
           +V   +  +   L   ++  + +LS+ R Q       +E +     I    +  V     
Sbjct: 82  VVEVGEHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGIVTGTVIEVVKGGL 141

Query: 567 ---IGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASSSLAEIEAAR-EM 609
              IG+ G +   +VE             +  AK+   D     +  S  A +E  + E+
Sbjct: 142 ILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEV 201

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            ++  +  +  ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  
Sbjct: 202 RQTFLNTLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQE 260

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V V++LD D +R ++ LS+K   ++  +
Sbjct: 261 VTVEVLDVDMERERVSLSLKATQEDPWQ 288



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWQQFARTHQIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN-TGKPI 698
           D ++VK++D D +R +I LS+K  +++ TG  I
Sbjct: 345 DEIFVKIIDIDLERRRISLSLKQANESATGADI 377


>gi|15641917|ref|NP_231549.1| 30S ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147673739|ref|YP_001217448.1| 30S ribosomal protein S1 [Vibrio cholerae O395]
 gi|227082045|ref|YP_002810596.1| ribosomal protein S1 [Vibrio cholerae M66-2]
 gi|229507989|ref|ZP_04397494.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
 gi|229515301|ref|ZP_04404761.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
 gi|229518911|ref|ZP_04408354.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
 gi|229521837|ref|ZP_04411254.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
 gi|229523935|ref|ZP_04413340.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
 gi|229529059|ref|ZP_04418449.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
 gi|229607535|ref|YP_002878183.1| 30S ribosomal protein S1 [Vibrio cholerae MJ-1236]
 gi|254286724|ref|ZP_04961678.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
 gi|254849003|ref|ZP_05238353.1| ribosomal protein S1 [Vibrio cholerae MO10]
 gi|255745326|ref|ZP_05419275.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
 gi|9656450|gb|AAF95063.1| ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|146315622|gb|ABQ20161.1| ribosomal protein S1 [Vibrio cholerae O395]
 gi|150423151|gb|EDN15098.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
 gi|227009933|gb|ACP06145.1| ribosomal protein S1 [Vibrio cholerae M66-2]
 gi|227013813|gb|ACP10023.1| ribosomal protein S1 [Vibrio cholerae O395]
 gi|229332833|gb|EEN98319.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
 gi|229337516|gb|EEO02533.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
 gi|229340762|gb|EEO05767.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
 gi|229343600|gb|EEO08575.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
 gi|229348006|gb|EEO12965.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
 gi|229355494|gb|EEO20415.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
 gi|229370190|gb|ACQ60613.1| SSU ribosomal protein S1p [Vibrio cholerae MJ-1236]
 gi|254844708|gb|EET23122.1| ribosomal protein S1 [Vibrio cholerae MO10]
 gi|255737156|gb|EET92552.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
 gi|327484459|gb|AEA78866.1| SSU ribosomal protein S1p [Vibrio cholerae LMA3894-4]
          Length = 556

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +   V  I  G V         S I  ++  +  G ++ +V               
Sbjct: 20  QGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGF 79

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      +  ++  A ++A      I  ++    +     +  F P      +
Sbjct: 80  GETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSL---V 136

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               IR+   +  K +   V +   K N      V ++  ++ E E++ E    +  + E
Sbjct: 137 DVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESESSVERDELLETLQE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD
Sbjct: 192 GTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + ++    I 
Sbjct: 250 RDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 531



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440


>gi|261210556|ref|ZP_05924849.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
 gi|260840341|gb|EEX66912.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
          Length = 556

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +   V  I  G V         S I  ++  +  G ++ +V               
Sbjct: 20  QGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGF 79

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      +  ++  A ++A      I  ++    +     +  F P      +
Sbjct: 80  GETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSL---V 136

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               IR+   +  K +   V +   K N      V ++  ++ E E++ E    +  + E
Sbjct: 137 DVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESESSVERDELLETLQE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD
Sbjct: 192 GTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + ++    I 
Sbjct: 250 RDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529


>gi|225174807|ref|ZP_03728804.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169447|gb|EEG78244.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 678

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 11/194 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM--AIPPDQIRNVIGMGG 571
           +  ++++ +Q       +  +      E    +     R+      +    I  ++ +  
Sbjct: 452 KEKLILSRKQVLEEEAAVQKDKVLAELEPGQIIKGTVKRLTNFGAFVDVGGIDGLVHIS- 510

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAE-------IEAAREMIRSITDVPEVNKIYK 624
           ++    ++  G  +++ D+  VK+               +A  +    +        + +
Sbjct: 511 EISWHRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLRQAQPDPWTEVGQKFSAGDVVE 570

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V +++DFGAFV      +GLVHISQL+   V + S+VV++GD V VK+LD + D  ++
Sbjct: 571 GKVTRIVDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVKVKILDINTDGKRV 630

Query: 684 KLSMKVVDQNTGKP 697
            LSM+       K 
Sbjct: 631 SLSMRDAAPRPKKE 644



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I +     G+ I   + +        +   + ++   + E EAA +  + + ++ 
Sbjct: 425 VDVRYIPDFNEFQGQEISFKIIEMRP-----EKEKLILSRKQVLEEEAAVQKDKVLAEL- 478

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD- 676
           E  +I KG V ++ +FGAFV   G  DGLVHIS++S  R+    +V+  GD + VK+++ 
Sbjct: 479 EPGQIIKGTVKRLTNFGAFVDV-GGIDGLVHISEISWHRIDNPGEVLSVGDEIEVKVIEV 537

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             +R +I LS++    +    +
Sbjct: 538 IPERERIGLSLRQAQPDPWTEV 559



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            +  G VV+V D    V      +G++   ++  E     +DV++ G  V V +   DD+
Sbjct: 307 DVVTGTVVQVSDDEVLVDIGYKSEGVLPRQEVILEGDQMLADVMENGQEVEVAVKKVDDQ 366

Query: 681 -GKIKLSMKVVD 691
            G+I LS K ++
Sbjct: 367 EGRIILSRKAIE 378


>gi|212212974|ref|YP_002303910.1| 30S ribosomal protein S1 [Coxiella burnetii CbuG_Q212]
 gi|212011384|gb|ACJ18765.1| SSU ribosomal protein S1P [Coxiella burnetii CbuG_Q212]
          Length = 555

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +  +  I+  +    +     +  F P   +   P           G +   
Sbjct: 98  LEKAYKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVKPVRDP-------GYLEDK 150

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            ++    K++   +  V    + +    +A E    + ++ E  +I KG +  + D+GAF
Sbjct: 151 EIDFKIIKMDQRRNNVVVSRRAVMEAETSA-ERQARLEELQEGQEI-KGVIKNITDYGAF 208

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   SD++  GD V VK+L FD D+ ++ L MK +  +  
Sbjct: 209 VDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPW 267

Query: 696 KPI 698
             I
Sbjct: 268 AKI 270



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  ++   +    ++RL+  +    ++ +          + +GG     
Sbjct: 159 MDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNK 621
               +  G V+     +N+ D+  VK+               + A +    I     VN 
Sbjct: 219 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH S+L    +    S VV+ G+ V V +L+ D +
Sbjct: 279 RVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K   +N  + 
Sbjct: 339 RRRISLGIKQCKRNPWQE 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +    R   +   +  E ++   G+V  + DFG F+   G  D
Sbjct: 333 LEIDEERRRISLGIKQCK----RNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S        + +   K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 389 GLVHLSDISWT--ESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEGDP 440



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +  + + + + +V +V    A +       G + ++  + +RV   +  +  G
Sbjct: 439 DPFMEFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V VK+++ D + + I +S K V+  + K
Sbjct: 499 DEVAVKIVNVDRKNRLINVSHKAVEGRSEK 528


>gi|92114285|ref|YP_574213.1| 30S ribosomal protein S1 [Chromohalobacter salexigens DSM 3043]
 gi|91797375|gb|ABE59514.1| SSU ribosomal protein S1P [Chromohalobacter salexigens DSM 3043]
          Length = 559

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +   +  A ++ +  +  I  ++    +    
Sbjct: 66  DEVKVALEAVEDGFGETRLSREKAKRAEAWKELEAAFEKDEIVKGVINGKVKGGFTVDVS 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 SIRAFLPGSL---VDVRPVRDTAHLEHKELDFKVIKLDPKRN-----NVVVSRRAVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  +I  G V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLATLQEGQQI-NGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD V VK+L FD +R ++ L +K + ++    I
Sbjct: 236 AVGDEVNVKVLKFDRERNRVSLGLKQLGEDPWVNI 270



 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------KVIRGIV 578
            R  +L   +    E+ L   +   ++  +          + +GG         +    +
Sbjct: 169 SRRAVLEAENSAEREALLATLQEGQQINGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRI 228

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +     V + D+  VK+          +        +   +I D    N     +V  + 
Sbjct: 229 KHPSEIVAVGDEVNVKVLKFDRERNRVSLGLKQLGEDPWVNIKDRYPENTRVNARVTNLT 288

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +R +I L +K 
Sbjct: 289 DYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDDVEVMVLDIDEERRRISLGIKQ 348

Query: 690 VDQNTGKP 697
              N  + 
Sbjct: 349 CTTNPWED 356



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++                       +   
Sbjct: 316 IHPSKVVQV----GDDVEVMV------LDIDEERRRISLGIKQCTTN----PWEDFSARY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G +  + DFG F+   G  DGLVH+S +S      +     K+GD     +L 
Sbjct: 362 NKGDRVAGTIKSITDFGIFIGLEGGIDGLVHLSDISWSEPGEEAVRKFKKGDEAEAVILS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K ++ + 
Sbjct: 422 IDPERERISLGIKQLETDP 440



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G+VV+V    A V        ++  S++S +RV    +V+ EGD+V  K++  D + 
Sbjct: 453 VVTGRVVEVDAKEAHVELATDVVAVLKASEISADRVEDARNVLSEGDSVEAKIVGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  DQ   +
Sbjct: 513 RAINLSVKAKDQTDTR 528


>gi|322830973|ref|YP_004211000.1| Tex-like protein [Rahnella sp. Y9602]
 gi|321166174|gb|ADW71873.1| Tex-like protein [Rahnella sp. Y9602]
          Length = 776

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|240274879|gb|EER38394.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H143]
          Length = 1210

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-S 653
               E    R     + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S + +
Sbjct: 219 DHDDEEFFKRPPTPELDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQA 278

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
             RV   SD+V +G  V VK++      ++ LSMK VDQ TG+ + 
Sbjct: 279 GARVNHPSDLVSKGQPVKVKVITIQGS-RVGLSMKEVDQGTGRDLA 323


>gi|148549148|ref|YP_001269250.1| 30S ribosomal protein S1 [Pseudomonas putida F1]
 gi|161378133|ref|NP_743928.2| 30S ribosomal protein S1 [Pseudomonas putida KT2440]
 gi|167032375|ref|YP_001667606.1| 30S ribosomal protein S1 [Pseudomonas putida GB-1]
 gi|325276950|ref|ZP_08142633.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
 gi|148513206|gb|ABQ80066.1| SSU ribosomal protein S1P [Pseudomonas putida F1]
 gi|166858863|gb|ABY97270.1| ribosomal protein S1 [Pseudomonas putida GB-1]
 gi|313500062|gb|ADR61428.1| RpsA [Pseudomonas putida BIRD-1]
 gi|324097915|gb|EGB96078.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
          Length = 558

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  +         ++  A    +  +  I  ++    +    
Sbjct: 66  DEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKGGFTVDVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  S+ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREALLETLQEGQQV-KGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD V V++L FD +R ++ L +K + ++    I
Sbjct: 236 NVGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAI 270



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRSVLEAENSAEREALLETLQEGQQVKGIVKNLTDYGAFVDLGGIDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNK 621
               +    ++     VN+ D+  V++               +   +   +IT       
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSLGLKQMGEDPWVAITARYPEGT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             + +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 279 RVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCKSNPWED 356



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V +V   GA V      +  +  S++S +RV    +V+KEG+ +  K++  D + 
Sbjct: 453 IVKGIVKEVDAKGAIVTLADDIEATLKASEISRDRVEDARNVLKEGEEIEAKIISVDRKS 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D    +  +
Sbjct: 513 RVISLSIKSKDDAEEREAI 531



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 316 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S     +   V   K+GD +   +L
Sbjct: 362 NKGDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGE-EAVRRFKKGDELETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGIKQLEDDP 440


>gi|302388400|ref|YP_003824222.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
 gi|302199028|gb|ADL06599.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
          Length = 310

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 14/226 (6%)

Query: 467 VKDGDDFIILSDI-SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           + +  +F +L +I  GDE     +    A    G   +   +    ++   +   L    
Sbjct: 67  LSNDPEFNLLREIQPGDEITATVV---SADDGEGNIVLSRKLANDRLAWEKLGSMLSDRT 123

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
             R+ I   +          +  F P      +  + + ++    GKVI   V      +
Sbjct: 124 IARVKIEEIVKGGAVAYLEGIRGFIPAS---KLAGEYVEDLDEYNGKVIEVTV------I 174

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
             D++    + S     +   +E      +  +V  + +G V  + D+GAF++      G
Sbjct: 175 TADEENKKLVLSGREPALMKQKEETSKKIEKCQVGTVMEGTVDSLKDYGAFINLENGLSG 234

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           L+HISQ+S++R+     V+KEG TV VK++   D  KI LSMK V 
Sbjct: 235 LLHISQISSQRIKHPGVVLKEGQTVKVKIISIADH-KISLSMKAVQ 279


>gi|292619482|ref|XP_002663995.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 3 [Danio rerio]
          Length = 1224

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKT 660
             + + R   + P V  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  
Sbjct: 240 KDKHVDRPPPEEPSVADIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANV 299

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +DVV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 300 ADVVSKGQRVKVKVLSFTGS-KTSLSMKDVDQDTGEDL 336


>gi|256005189|ref|ZP_05430157.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|255990843|gb|EEU00957.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|316941592|gb|ADU75626.1| Tex-like protein [Clostridium thermocellum DSM 1313]
          Length = 718

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L     +VE M I  +++   IG+G   ++ I+++            +K       E+  
Sbjct: 584 LDGLVEKVEKMGI--EKVAREIGVGVPTLKDIIKEL-----------LKPGRDPRDELPK 630

Query: 606 AREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              +   +         I  G V  V DFGAFV     +DGLVHIS+LS + V    DVV
Sbjct: 631 PMLLTDVLHLEDLRPGMILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVV 690

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             GD V V++LD D +R +I +SMK V+
Sbjct: 691 SVGDIVKVRILDVDVERKRISMSMKGVN 718


>gi|220931888|ref|YP_002508796.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
           orenii H 168]
 gi|219993198|gb|ACL69801.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
           orenii H 168]
          Length = 678

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 3/179 (1%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            ++A    L        + +E   ++         +          IG    +   + + 
Sbjct: 379 FEKAWERILKAYENDEIIEAEVTREVKGGLVVDIGLRGFVHASHVAIGYVEDLSDYVGKT 438

Query: 581 TGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
              K + ++ D    + S+     E   +      +  +  ++ KG+V K++DFGAFV  
Sbjct: 439 LRLKVIEVERDKNNVVLSAKKVLEEEREKQKEKTLEELQEGQVVKGKVTKIVDFGAFVDL 498

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            G  +GL+HIS++S  R+   S+V++EG  + VK+L  + +  +I L +K +  +  + 
Sbjct: 499 -GGIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKEEERISLGLKQLLPDPWEE 556



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +            ++  G + K++DFGAF+      +GL+HISQLS   V    +VV  G
Sbjct: 552 DPWEEFAKKHYEGEVVSGTITKIVDFGAFMEIENGIEGLIHISQLSHRHVKTPDEVVSVG 611

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           + +  ++++ D ++ ++ LS+K +++    P
Sbjct: 612 EEIKAEIINIDPEQKRVGLSIKALEEQPETP 642



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 563 IRNVIGMGGKVIRG--IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           I+ VI    +  R   + E+    VN D+         +  E E       +     +  
Sbjct: 247 IKEVIEAMSEEKRDAELQEEIQEGVNTDNTPETPNGEENPIENEEEFNYDDNNPADLKKG 306

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679
           +  KG+VV++ D G +V      +GL+ + +LS        ++V+EG+ + V +L   D+
Sbjct: 307 QQVKGKVVEIGDNGVYVDVGYKTEGLIPLRELSHRDFEDPHEIVEEGEEIDVIVLTLEDE 366

Query: 680 RGKIKLSMKVVD-QNTGKPIV 699
            G + LS K  D +   + I+
Sbjct: 367 EGNMVLSKKRADFEKAWERIL 387


>gi|217976862|ref|YP_002361009.1| 30S ribosomal protein S1 [Methylocella silvestris BL2]
 gi|217502238|gb|ACK49647.1| ribosomal protein S1 [Methylocella silvestris BL2]
          Length = 582

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A ++ ++    I N++    +        F PR     +    IR+V  + G     
Sbjct: 107 LEKAFEKQEKVEGVIFNQVKGGFTVDLDGAVAFLPRS---QVDIRPIRDVTPLMGVPQPF 163

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            + +   +      G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAF
Sbjct: 164 QILKMDRRR-----GNIVVSRRTVLEESRAEQRHEIVANLEEG-QVIEGMVKNITDYGAF 217

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+H++ ++  RV   ++V+  G TV VK++  + D  +I L MK + ++  
Sbjct: 218 VDL-GGIDGLLHVTDIAWRRVNHPTEVLSIGQTVRVKIIKINHDTHRISLGMKQLLEDPW 276

Query: 696 KPI 698
           + I
Sbjct: 277 QGI 279



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     V+  ++G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPVDARFRGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVAT 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K    N  +
Sbjct: 334 SQEVDVQVLEVDPVKRRISLGLKQTLANPWE 364



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              S  +   V    +G+V    +FG F+   G  DG+VH+S L  ++   +  +  K+G
Sbjct: 362 PWESFAEKFPVGSEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWKKPGEQAIEDYKKG 421

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
           D V  K+LD D ++ +I L +K +
Sbjct: 422 DIVRAKVLDVDIEKERISLGVKQL 445


>gi|238783100|ref|ZP_04627126.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
           43970]
 gi|238715896|gb|EEQ07882.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
           43970]
          Length = 788

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|295398579|ref|ZP_06808611.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563]
 gi|294973180|gb|EFG48975.1| 30S ribosomal protein S1 [Aerococcus viridans ATCC 11563]
          Length = 428

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     V ID      I S      E          +  +      G V ++ +FGAF+
Sbjct: 164 QELEVKIVEIDPSENRLILSHKEIAAEKRIAERAEKLNSFQEGDKVTGTVARLANFGAFI 223

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVHISQ++   V   SDV+ EG  V V +L  D +RG+I LS+K +     +
Sbjct: 224 DL-GGIDGLVHISQIAQAHVNHPSDVLSEGQEVEVLVLSVDEERGRISLSIKALQPGPWE 282

Query: 697 PI 698
            I
Sbjct: 283 NI 284



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+   +I+ S  A      E I      P+  ++ +G V +++DFGAFV      +GLVH
Sbjct: 263 DEERGRISLSIKALQPGPWENIEEKA--PKGAEL-EGTVRRLVDFGAFVEVFPGVEGLVH 319

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           ISQ+S + VA   + + EG  + VK+LD D +  ++ LS+K +++     
Sbjct: 320 ISQISHDHVATPGEKLTEGQAIQVKVLDVDAENERLSLSIKALEEAPEAD 369



 Score = 39.1 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVK 665
            E I + +   ++     G+V+ + D    V   G   +G++   +LS + +    +V K
Sbjct: 17  MEEILAESVEVKIGDTVTGEVLSIDDNQVIVGIEGAGVEGVIPFKELSAQPIDSIEEVAK 76

Query: 666 EGDT---VWVKLLDFDDRGKIKLSMKVVD 691
            GDT   V +K +   + G   LS + ++
Sbjct: 77  VGDTLELVVIKQIKEKENGSFLLSRRRIE 105


>gi|242371662|ref|ZP_04817236.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242350611|gb|EES42212.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 134

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|209364104|ref|YP_001424879.2| 30S ribosomal protein S1 [Coxiella burnetii Dugway 5J108-111]
 gi|215918988|ref|NP_819560.2| 30S ribosomal protein S1 [Coxiella burnetii RSA 493]
 gi|206583873|gb|AAO90074.2| SSU ribosomal protein S1P [Coxiella burnetii RSA 493]
 gi|207082037|gb|ABS77449.2| SSU ribosomal protein S1P [Coxiella burnetii Dugway 5J108-111]
          Length = 555

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +  +  I+  +    +     +  F P   +   P           G +   
Sbjct: 98  LEKAYKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVKPVRDP-------GYLEDK 150

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            ++    K++   +  V    + +    +A E    + ++ E  +I KG +  + D+GAF
Sbjct: 151 EIDFKIIKMDQRRNNVVVSRRAVMEAETSA-ERQARLEELQEGQEI-KGVIKNITDYGAF 208

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   SD++  GD V VK+L FD D+ ++ L MK +  +  
Sbjct: 209 VDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPW 267

Query: 696 KPI 698
             I
Sbjct: 268 AKI 270



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  ++   +    ++RL+  +    ++ +          + +GG     
Sbjct: 159 MDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNK 621
               +  G V+     +N+ D+  VK+               + A +    I     VN 
Sbjct: 219 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH S+L    +    S VV+ G+ V V +L+ D +
Sbjct: 279 RVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K   +N  + 
Sbjct: 339 RRRISLGIKQCKRNPWQE 356



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +    R   +   +  E ++   G+V  + DFG F+   G  D
Sbjct: 333 LEIDEERRRISLGIKQCK----RNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S        + +   K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 389 GLVHLSDISWT--ESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEGDP 440



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +  + + + + +V +V    A +       G + ++  + +RV   +  +  G
Sbjct: 439 DPFMEFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V VK+++ D + + I +S K V+  + K
Sbjct: 499 DEVAVKIVNVDRKNRLINVSHKAVEGRSEK 528


>gi|148827760|ref|YP_001292513.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
 gi|148719002|gb|ABR00130.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
          Length = 770

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD
Sbjct: 640 EGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGD 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|125718044|ref|YP_001035177.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK36]
 gi|125497961|gb|ABN44627.1| 30S ribosomal protein S1, putative [Streptococcus sanguinis SK36]
          Length = 401

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|169785967|ref|XP_001827444.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Aspergillus oryzae RIB40]
 gi|83776192|dbj|BAE66311.1| unnamed protein product [Aspergillus oryzae]
          Length = 1229

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVH 648
             +       +    +     + D P + K+Y G+V  V DFGAFV+  G +   DGLVH
Sbjct: 232 RRQRRHDRSQDDHFRKPPPVELDDAPILYKVYDGRVTGVKDFGAFVNLSGVKGKVDGLVH 291

Query: 649 ISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +S +    RV   SD+V  G  V VK++      +I LSMK VDQ TG  ++
Sbjct: 292 VSAMQEGARVNHPSDLVSRGQPVKVKVISIQGS-RIGLSMKEVDQVTGLDLI 342


>gi|212218847|ref|YP_002305634.1| 30S ribosomal protein S1 [Coxiella burnetii CbuK_Q154]
 gi|212013109|gb|ACJ20489.1| SSU ribosomal protein S1P [Coxiella burnetii CbuK_Q154]
          Length = 555

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +  +  I+  +    +     +  F P   +   P           G +   
Sbjct: 98  LEKAYKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVKPVRDP-------GYLEDK 150

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            ++    K++   +  V    + +    +A E    + ++ E  +I KG +  + D+GAF
Sbjct: 151 EIDFKIIKMDQRRNNVVVSRRAVMEAETSA-ERQARLEELQEGQEI-KGVIKNITDYGAF 208

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   SD++  GD V VK+L FD D+ ++ L MK +  +  
Sbjct: 209 VDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPW 267

Query: 696 KPI 698
             I
Sbjct: 268 AKI 270



 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  ++   +    ++RL+  +    ++ +          + +GG     
Sbjct: 159 MDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNK 621
               +  G V+     +N+ D+  VK+               + A +    I     VN 
Sbjct: 219 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH S+L    +    S VV+ G+ V V +L+ D +
Sbjct: 279 RVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K   +N  + 
Sbjct: 339 RRRISLGIKQCKRNPWQE 356



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +    R   +   +  E ++   G+V  + DFG F+   G  D
Sbjct: 333 LEIDEERRRISLGIKQCK----RNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S        + +   K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 389 GLVHLSDISWT--ESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEGDP 440



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +  + + + + +V +V    A +       G + ++  + +RV   +  +  G
Sbjct: 439 DPFMEFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V VK+++ D + + I +S K V+  + K
Sbjct: 499 DEVAVKIVNVDRKNRLINVSHKAVEGRSEK 528


>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
          Length = 405

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +R  V++    ++ +++  +      L E   A    + +    
Sbjct: 143 VERHFVEDFSDYKGRTLRVKVKE----LDRENNKVILSQKDVLEEEFEA--NKQKVMSEL 196

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ +G V ++  FGAFV   G  DGLVH+S+++   V K SDV+ EGD V VK+L  
Sbjct: 197 QDGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKV 255

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++GKI LS+K       +
Sbjct: 256 DPEKGKISLSIKAAAPGPWE 275



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G        +Q   KV   D    KI+ S  A   AA     +  +   
Sbjct: 234 HVDKPSDVLSEG--------DQVRVKVLKVDPEKGKISLSIKA---AAPGPWETAGEQFN 282

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I  G V +++ FGAFV      +GLVHISQ+S + +    +V+KEG  V VK+LD +
Sbjct: 283 TGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDIN 342

Query: 679 -DRGKIKLSMKVVDQNTGK 696
               +I LS+K  ++   +
Sbjct: 343 TSEQRISLSIKETEEAPAQ 361



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            S     + A E    +  +  + K    KG +VK+ D  A+V      DG++ + +LS+
Sbjct: 1   MSEETRNQEAAENQEQLDQIVSLKKGDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSS 60

Query: 655 ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD-QNTGKPI 698
            ++   SD V+ G  V  K++   DD+  + LS + +D +N+   +
Sbjct: 61  VQLDNASDAVQVGQEVECKVVSINDDKESLVLSKRAIDTENSWDEL 106


>gi|16079345|ref|NP_390169.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310206|ref|ZP_03592053.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221314529|ref|ZP_03596334.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319451|ref|ZP_03600745.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323727|ref|ZP_03605021.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|585942|sp|P38494|RS1H_BACSU RecName: Full=30S ribosomal protein S1 homolog
 gi|533106|gb|AAA85150.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|1146215|gb|AAC83962.1| similar to Escherichia coli S1 ribosomal protein; putative
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634706|emb|CAB14204.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 382

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +  +V +        D   V ++  ++ E E A +    +  + 
Sbjct: 132 VEAHFVEDFTDYKGKTLSLLVVELDR-----DKNRVILSHRAVVESEQANKKQELLQSL- 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K         I
Sbjct: 245 DRDNERISLSIKDTLPGPWNQI 266



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           TV VK+LD ++   +I LSM+ +++  
Sbjct: 322 TVKVKVLDVNENEERISLSMRELEETP 348



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVVK 
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|238765201|ref|ZP_04626132.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
           33638]
 gi|238696584|gb|EEP89370.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
           33638]
          Length = 792

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614]
 gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614]
          Length = 490

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCG 641
           AK+   D     +  S  A +E  +  +R       +  +I KG V  +++FGAFV   G
Sbjct: 176 AKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQKGQIRKGVVSSIVNFGAFVDL-G 234

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++  +
Sbjct: 235 GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQ 290



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+  
Sbjct: 287 DPWQHFARTHQIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVN 346

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V VK++D D +R +I LS+K  ++  
Sbjct: 347 DDVMVKIIDIDLERRRISLSLKQANETA 374



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     S+VV  GD V   +L   D 
Sbjct: 42  DIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVAVGDEVEALVLQKEDK 101

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 102 EGRLILSKKRAQ 113



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D     I S   A+ E A   I     V E + + +G V++V+  G  +       G +
Sbjct: 99  EDKEGRLILSKKRAQYERAWGTIE---QVKEEDGVVEGTVIEVVKGGLILDI--GLRGFL 153

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             S +   RV      V  G T+  K+++ D +R  + LS +   + T
Sbjct: 154 PASLVEMRRVRDLQPYV--GQTLEAKIIELDKNRNNVVLSRRAWLEQT 199


>gi|58266336|ref|XP_570324.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134111338|ref|XP_775811.1| hypothetical protein CNBD5400 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258475|gb|EAL21164.1| hypothetical protein CNBD5400 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226557|gb|AAW43017.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1189

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 12/102 (11%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG----------ARDGLVHISQLSTER 656
           R    ++ + P + KIY G +  + DFGAFV   G          + +GL+H+S ++  R
Sbjct: 211 RHGRPTVDERPVLYKIYNGTIANITDFGAFVTLDGVERKIDGNQRSNEGLIHVSNITNGR 270

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V    D +K G  V VK++      KI LSMK VDQNTG  +
Sbjct: 271 VNSPRDFLKRGQRVKVKVMAVSP--KIGLSMKDVDQNTGDDL 310


>gi|188535335|ref|YP_001909132.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99]
 gi|188030377|emb|CAO98268.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99]
          Length = 777

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 652 MVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|219848025|ref|YP_002462458.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542284|gb|ACL24022.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 397

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + +D +    + S   A  E  +     +    +   +  G+V ++ +FGAF+
Sbjct: 172 QEIPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQPGDVLVGKVNQLTNFGAFI 231

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              GA DGL HIS+LS +RV    +V++ G  V V +++ D +R +I LS++ +  N  +
Sbjct: 232 DLGGA-DGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQDNPWE 290

Query: 697 PI 698
            I
Sbjct: 291 TI 292



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 82/208 (39%), Gaps = 22/208 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I++ I +  ++  +     +L+E +      + Q       ++   +   ++  +   G 
Sbjct: 170 INQEIPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQPGDVLVGKVNQLTNFGA 229

Query: 572 KV-------IRGIVEQTGAKVN----IDDDGTVKIASSSLAEIEAAR----------EMI 610
            +       +  I E +  +VN    +   G          + E  R             
Sbjct: 230 FIDLGGADGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQDNPW 289

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            +I     + ++  G V  V  FGAFV    A +GL+H S+L+ +  A+  DV++ G  V
Sbjct: 290 ETIDQRYTLGQLVTGPVTNVTPFGAFVQVEEAVEGLIHASELTADPQAQPRDVLQPGQIV 349

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             +++  D  R ++ LS++ ++ +   P
Sbjct: 350 TARVISLDRQRQRMGLSLRRINDDEPLP 377



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH---ISQLSTERVAKTSDVVKEGDTVWV 672
            P+  ++ +G ++ + + G  V     R+G++    + Q+  + +      +K GDTV V
Sbjct: 29  RPQRGELREGLIMHIEENGVLVSIGTKREGIIPAQDLRQMGEDFINS----LKVGDTVQV 84

Query: 673 KLLD---FDDRGKIKLSMKVVDQN 693
            + +    D    + LSM  V ++
Sbjct: 85  YVQEPENRDGDLILSLSMVQVAKD 108


>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
 gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
          Length = 493

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCG 641
           AK+   D     +  S  A +E  +  +R       +  +I KG V  +++FGAFV   G
Sbjct: 177 AKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQKGQIRKGVVSSIVNFGAFVDL-G 235

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             DGLVH+S+LS + +   S+VV  GD V V++LD D DR ++ LS+K   ++  +
Sbjct: 236 GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQ 291



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ +I  G+V K++ FG+FV      +GLVHIS+L+   V     VV+  
Sbjct: 288 DPWQHFARTHQIGQIVPGKVTKLVPFGSFVRVEEGIEGLVHISELAERHVEIPEQVVQVN 347

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D V VK++D D +R +I LS+K  ++ 
Sbjct: 348 DDVMVKIIDIDLERRRISLSLKQANET 374



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     S+VV+ GD V   +L   D 
Sbjct: 43  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVEVGDKVEALVLQKEDK 102

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 103 EGRLILSKKRAQ 114



 Score = 41.4 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D     I S   A+ E A   I     V E + + +G V++V+  G  +       G +
Sbjct: 100 EDKEGRLILSKKRAQYERAWGTIE---QVKEEDGVVEGAVIEVVKGGLILDI--GLRGFL 154

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             S +   RV      V  G T+  K+++ D +R  + LS +   + T
Sbjct: 155 PASLVEMRRVRDLQPYV--GQTLEAKIIELDKNRNNVVLSRRAWLEQT 200


>gi|291619238|ref|YP_003521980.1| YhgF [Pantoea ananatis LMG 20103]
 gi|291154268|gb|ADD78852.1| YhgF [Pantoea ananatis LMG 20103]
          Length = 774

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAF+     +DGLVHIS LS + V     VVK GD V VK+++ D  
Sbjct: 651 MVLEGAVTNVTNFGAFIDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|188589637|ref|YP_001919919.1| protein tex [Clostridium botulinum E3 str. Alaska E43]
 gi|188499918|gb|ACD53054.1| protein tex [Clostridium botulinum E3 str. Alaska E43]
          Length = 725

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   +  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ 
Sbjct: 646 KPGMVLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEV 705

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I LSMK VD+
Sbjct: 706 DQKRKRISLSMKDVDE 721


>gi|307825282|ref|ZP_07655502.1| ribosomal protein S1 [Methylobacter tundripaludum SV96]
 gi|307733738|gb|EFO04595.1| ribosomal protein S1 [Methylobacter tundripaludum SV96]
          Length = 553

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 82/216 (37%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +   +     G T +  D      + + +  A ++       I  ++    + +  
Sbjct: 66  DEVEVALDLFEDGLGATLLSRDKAKKNKAWSELENAFEKEATIIGRITGKVRGGFTVAVG 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            L  F P      +    IR+   +  + +   V      + ID      + S      +
Sbjct: 126 ALRAFLPGSL---VDVRPIRDTTFLENRDLEFKV------IKIDQKRNNVVLSRRAVVEK 176

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                   +    E   +  G V  + D+GAF+   G  DGL+HI+ ++  RV   S+ V
Sbjct: 177 EYSAEREELLKTLEEGAVVTGVVKNLTDYGAFIDL-GGIDGLLHITDMAWRRVRHPSECV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           + G  + VK+L +D D+ ++ L MK + ++  + I 
Sbjct: 236 EIGQEIKVKVLKYDKDKNRVSLGMKQMGEDPWQNIA 271



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I ++   KV   D    +++       E   +  ++I           G+V  + D+G 
Sbjct: 236 EIGQEIKVKVLKYDKDKNRVSLGMKQMGE---DPWQNIARRYPAGTRVFGKVNNLTDYGC 292

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV      +GLVH+S++    +    S +V+ GD V V +L+ D +R +I L MK    N
Sbjct: 293 FVEIEEGVEGLVHVSEMDWTNKNVNPSKLVQLGDEVEVMVLEIDEERRRISLGMKQCKTN 352

Query: 694 TGKP 697
               
Sbjct: 353 PWDE 356



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++  ++     E   + KG V +V   GA +      +G +  S++  +RV     ++KE
Sbjct: 438 QDPFQNFLATHEKGSLVKGTVKEVDAKGAVITLADNVEGYLRASEIQRDRVEDARTLLKE 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           GD +  K +  D + K I LS+K  D + 
Sbjct: 498 GDELEAKFIGVDKKSKSISLSIKAKDSDE 526



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +                      G++  + DFG F+   G  D
Sbjct: 333 LEIDEERRRISLGMKQCKTN----PWDEFAATHNKGDKISGKIKSITDFGIFIGLDGGID 388

Query: 645 GLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   E  A   D  K+GD +   +L  D +R +I L +K ++Q+ 
Sbjct: 389 GLVHMSDISWADEGEASVRD-FKKGDELETVILAVDSERERISLGIKQLEQDP 440


>gi|72161595|ref|YP_289252.1| 30S ribosomal protein S1 [Thermobifida fusca YX]
 gi|71915327|gb|AAZ55229.1| SSU ribosomal protein S1P [Thermobifida fusca YX]
          Length = 485

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  + E+ ++  +  +  +I KG V  +++FGAFV 
Sbjct: 170 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVD 229

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++  +
Sbjct: 230 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQ 287



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 284 DPWQQFARTHQIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVG 343

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             ++VK++D D DR +I LS+K  +++
Sbjct: 344 TEIFVKIIDIDLDRRRISLSLKQANES 370



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 39  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLILSKKRAQ 110


>gi|328955788|ref|YP_004373121.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
 gi|328456112|gb|AEB07306.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
          Length = 422

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +   +++++    G  I   V +     N      V      L E   A      I    
Sbjct: 151 VDLRRVKDLTSYMGTSIEARVIEMDRNRN----NVVLSRRVVLEESRKA--ERSEILSKL 204

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD 
Sbjct: 205 KSGMRLTGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDV 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R +I L +K   ++  + +V
Sbjct: 264 DLNRERISLGLKQTTEDPWRALV 286



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R++     V  I +G+V K++ FGAFV      +GLVHIS+++ + V + S V+   
Sbjct: 280 DPWRALVKKYPVGAIVEGRVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVIHTN 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + V VK+++ D DR +I LSMK   +  G  I
Sbjct: 340 EAVQVKVMEIDLDRRRISLSMKAAAETLGIEI 371



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      V      +G++ + +LS  + A  S++V  GD +   +L   D 
Sbjct: 35  DLVSGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDADPSELVSVGDPIEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K  +
Sbjct: 95  DGRLVLSKKRAE 106


>gi|262404268|ref|ZP_06080823.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
 gi|262349300|gb|EEY98438.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
          Length = 556

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +   V  I  G V         S I  ++  +  G ++ +V               
Sbjct: 20  QGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGF 79

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      +  ++  A ++A      I  ++    +     +  F P      +
Sbjct: 80  GETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSL---V 136

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               IR+   +  K +   V +   K N      V ++  ++ E E++ E    +  + E
Sbjct: 137 DVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESESSVERDELLETLQE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD
Sbjct: 192 GTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + ++    I 
Sbjct: 250 RDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V+ V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 439 DPFNAYVSDNKKGALVNGTVIAVDAKGAAIELEDGVEGYIRASEVSRDRIEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 531


>gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 385

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL----------GEFTP 551
            +++DM+ G ++ +        A      +L     +  E R  +            F P
Sbjct: 71  VLKVDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVADVGVRAFIP 130

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
                 +    + N+    G+ +R  V     +V+   +  +    + L E   AR   R
Sbjct: 131 ASL---VDRHFVENLEQFKGQKLRAKV----VEVDPHKNKLILSRRAVLEEESEARA--R 181

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            + +  +   + +G V ++ DFGAFV   GA DGLVHIS+LS   V   S+VV+EGD V 
Sbjct: 182 KLFEELKPGDVIEGTVQRLTDFGAFVDVGGA-DGLVHISELSFSHVNHPSEVVREGDRVK 240

Query: 672 VKLLDFDDR-GKIKLSMKVVDQNTGK 696
           V++L  D   G+I LS+K       +
Sbjct: 241 VRVLRVDPEAGRISLSIKAALPEPWE 266



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   +         + +G V +V+DFGAFV      +GLVH+SQ+S E V K SDV++ G
Sbjct: 263 EPWETYAHEFHPGDVVQGVVRRVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPG 322

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V V++L  D +R +I LSM+   Q 
Sbjct: 323 QEVTVRVLSVDPERKRISLSMRDSSQP 349



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G+V  V D G  V      +G +   +LS       SDVV  G TV  ++L  D +
Sbjct: 18  DVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTVTAQVLKVDME 77

Query: 680 RGKIKLSMKVVDQ-----------NTGKPI 698
            G + LS +  +Q            +G+PI
Sbjct: 78  SGHVTLSKRRAEQASAWERMQQLLESGEPI 107


>gi|6321634|ref|NP_011711.1| Ski6p [Saccharomyces cerevisiae S288c]
 gi|1176073|sp|P46948|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
           Full=Extracellular mutant protein 20; AltName:
           Full=Ribosomal RNA-processing protein 41; AltName:
           Full=Superkiller protein 6
 gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
 gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
 gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
 gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
 gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
 gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
 gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
 gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
 gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
 gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
          Length = 246

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 100/243 (41%), Gaps = 12/243 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R   + +        GSS   +G+ + I +V  G +E    +
Sbjct: 5   EIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVK-GPKEP--RL 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S   T +    +  N    +  E S+      RR +       R     +         
Sbjct: 62  KSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTV 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I   + E DG    + + G +LAL+DAG+ +   ++GI++GL     D   L D +  
Sbjct: 122 IDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY----DTTPLLDTNSL 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEMSKVLS 540
           +E+ +  +   V G    ++ + ++ KI       ++ + +  A R R  +++E  +  +
Sbjct: 178 EENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVR-DLMDEELRKHA 236

Query: 541 ESR 543
           + R
Sbjct: 237 QKR 239



 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 80/208 (38%), Gaps = 12/208 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G   ++  V   +  +           L V+     ++  +      + E 
Sbjct: 36  ADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNER 95

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           R  E +  + RM ++++  + +   +    + I+V++ D      +  +   + AL+ +G
Sbjct: 96  RVLEIQTSLVRMFEKNV--MLNIYPRTVIDIEIHVLEQDGGIMGSL--INGITLALIDAG 151

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
           +     + G  V   +   +L+    E+    ++ L V G  + + ++ +E   +  D +
Sbjct: 152 ISMFDYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDK-IPLDRL 210

Query: 201 LDAIIFGHNECKPVIEAI-SKLAKMCAK 227
            + +  G      V + +  +L K   K
Sbjct: 211 ENVLAIGIAGAHRVRDLMDEELRKHAQK 238


>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
          Length = 246

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 100/243 (41%), Gaps = 12/243 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R   + +        GSS   +G+ + I +V  G +E    +
Sbjct: 5   EIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVK-GPKEP--RL 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S   T +    +  N    +  E S+      RR +       R     +         
Sbjct: 62  KSQMDTSKALLNVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTV 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I   + E DG    + + G +LAL+DAG+ +   ++GI++GL     D   L D +  
Sbjct: 122 IDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY----DTTPLLDTNSL 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEMSKVLS 540
           +E+ +  +   V G    ++ + ++ KI       ++ + +  A R R  +++E  +  +
Sbjct: 178 EENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVR-DLMDEELRKHA 236

Query: 541 ESR 543
           + R
Sbjct: 237 QKR 239



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 80/208 (38%), Gaps = 12/208 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G   ++  V   +  +           L V+     ++  +      + E 
Sbjct: 36  ADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKSSHKNER 95

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           R  E +  + RM ++++  + +   +    + I+V++ D      +  +   + AL+ +G
Sbjct: 96  RVLEIQTSLVRMFEKNV--MLNIYPRTVIDIEIHVLEQDGGIMGSL--INGITLALIDAG 151

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
           +     + G  V   +   +L+    E+    ++ L V G  + + ++ +E   +  D +
Sbjct: 152 ISMFDYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDK-IPLDRL 210

Query: 201 LDAIIFGHNECKPVIEAI-SKLAKMCAK 227
            + +  G      V + +  +L K   K
Sbjct: 211 ENVLAIGIAGAHRVRDLMDEELRKHAQK 238


>gi|297559937|ref|YP_003678911.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844385|gb|ADH66405.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 496

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  + E+ ++  +  +  +I KG V  +++FGAFV 
Sbjct: 170 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVD 229

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++  +
Sbjct: 230 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQ 287



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 284 DPWQQFARTHQIGQVVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVG 343

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             ++VK++D D DR +I LS+K  +++
Sbjct: 344 TEIFVKIIDIDLDRRRISLSLKQANES 370



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 39  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDQVEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLILSKKRAQ 110


>gi|154294501|ref|XP_001547691.1| hypothetical protein BC1G_13853 [Botryotinia fuckeliana B05.10]
 gi|150844693|gb|EDN19886.1| hypothetical protein BC1G_13853 [Botryotinia fuckeliana B05.10]
          Length = 1220

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHIS 650
           K +     +    R     I D   + KIY G V  V DFGAFV+  G +   DGLVH+S
Sbjct: 226 KSSRRKREDDNYKRPRTPEIDDEVVLQKIYDGHVTSVKDFGAFVNIHGVKGKVDGLVHVS 285

Query: 651 QLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            L   +RV   SD+V     V VK++   +  +I LSMK VDQ TG  + 
Sbjct: 286 ALVEGQRVNHPSDLVSRNQPVKVKVIKV-EGNRIGLSMKEVDQETGMDLA 334


>gi|139437094|ref|ZP_01771254.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC
           25986]
 gi|133776741|gb|EBA40561.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC
           25986]
          Length = 369

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +   +++++    G  I   V +     N      V      L E   A      I    
Sbjct: 132 VDLRRVKDLTSYMGTRIEARVIEMDRNRN----NVVLSRRVVLEESRKA--ERSEILSKL 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD 
Sbjct: 186 KSGMRLQGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDV 244

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R +I L +K   ++  + +V
Sbjct: 245 DLNRERISLGLKQTTEDPWRALV 267



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R++     V  I +G V K++ FGAFV      +GLVHIS+++ + V + S V   G
Sbjct: 261 DPWRALVKKYPVGAIVEGTVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVTHVG 320

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D V VK+++ D DR +I LSMK   +  G  I
Sbjct: 321 DKVQVKVMEIDLDRRRISLSMKSAAETLGVEI 352



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      V      +G++ + +LS  + A  +D+V  GD +   +L   D 
Sbjct: 16  DLVNGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDANPADIVALGDPIEALVLQKEDK 75

Query: 680 RGKIKLSMKVVD 691
            G++ LS K  +
Sbjct: 76  DGRLVLSKKRAE 87


>gi|330830010|ref|YP_004392962.1| 30S ribosomal subunit protein S1 [Aeromonas veronii B565]
 gi|328805146|gb|AEB50345.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
           component of the degradosome [Aeromonas veronii B565]
          Length = 556

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 25/263 (9%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMK 508
            G  +   V  I  G V         S I  +E  + +G ++  V  T      + +D  
Sbjct: 20  QGSIVKGTVVAIENGFVLVDAGLKSESAIPAEEFKNAMGELEINVGDTVD----VALDSI 75

Query: 509 IGGISENIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMA 557
             G  E  +             L++A   +  ++  ++ KV     ++L      +    
Sbjct: 76  EDGFGETKLSREKAKRHEAWLQLEKAYEEQATVIGIINGKVKGGFTVELNGIRAFLPGSL 135

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    IR+   +  K +   V +   K N      V ++  ++ E E   E    + ++ 
Sbjct: 136 VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIETENTSERESLLANLQ 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F
Sbjct: 191 EGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKVLKF 248

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R ++ L +K + ++    I 
Sbjct: 249 DRERTRVSLGLKQLGEDPWVAIA 271



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V +V   GA +      +G +  S  + +RV   + V+  GD V  K +  D + 
Sbjct: 453 IVKGKVTEVDAKGAIIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + + LS++  D+   +
Sbjct: 513 RTVSLSVRAKDEADER 528



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKE 666
             +   +         G++  + DFG F+   G  DGLVH+S +S          +  K+
Sbjct: 353 PWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVRE-FKK 411

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD +   +L  D +R +I L +K ++++ 
Sbjct: 412 GDEIEAVVLQVDPERERISLGVKQIEEDP 440



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTS-DVVK 665
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S  V  
Sbjct: 265 DPWVAIAKRYPETTRLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                 + L   ++R +I L +K    N  +
Sbjct: 325 GDVVDVMVLDIDEERRRISLGLKQCKSNPWQ 355


>gi|288574973|ref|ZP_06393330.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570714|gb|EFC92271.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 512

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 3/133 (2%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-REMIRSITDVPEVNKIYKGQ 626
           G G    + I E    K+   D    ++  S    ++   +E   +         + +G 
Sbjct: 165 GRGVNPGKFIDEVFDVKLLEKDRRKRRLVLSRRTILDEELKEQRENFYRDVTEGTVLEGT 224

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  +  FG FV+     DGLVHIS+LS +R AK  D+ K+GDTV VK++  D +  +I L
Sbjct: 225 VSSLTSFGVFVNLGP-IDGLVHISELSWQRNAKPKDIAKKGDTVKVKVIGIDQEHNRISL 283

Query: 686 SMKVVDQNTGKPI 698
           S+K    +  + I
Sbjct: 284 SVKQTQSDPWETI 296



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +VV++ DFGAFV      +GL+HISQLST RV K  DV+ EG  V  ++++ + D  +I+
Sbjct: 394 KVVRLADFGAFVELEKGVEGLIHISQLSTRRVEKPGDVLSEGQEVTARVIEVNPDDRRIR 453

Query: 685 LSMKVVDQ 692
           LS+  +++
Sbjct: 454 LSISALEE 461



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G  ++  V      + ID +      S    +     +   +IT+  +      G 
Sbjct: 260 IAKKGDTVKVKV------IGIDQEHNRISLSVKQTQS----DPWETITERWKDGDTATGT 309

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V  V DFGAFV      +GL+HI  LS  R+    +V+K+G  V   +L+ D  + ++ L
Sbjct: 310 VTNVTDFGAFVEVEPGIEGLIHIGDLSWTRIKHPKEVIKKGQEVETVVLNVDPVKKRLSL 369

Query: 686 SMKVVDQN 693
             K ++  
Sbjct: 370 GYKQLNDP 377


>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
          Length = 501

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS   +  +  ++ KG V  +++FGAFV 
Sbjct: 175 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD 234

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 235 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWR 292



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + +I  G
Sbjct: 252 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWRQFARTHAIGQIVPG 306

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+ GD V +K++D D +R +I 
Sbjct: 307 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMIKVIDIDLERRRIS 366

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 367 LSLKQANE 374



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 44  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKEDK 103

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 104 EGRLILSKKRAQ 115


>gi|91715111|gb|ABE55037.1| SSU ribosomal protein S1P [Shewanella denitrificans OS217]
          Length = 577

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 13/252 (5%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +   V  I  G+V         S IS DE        ++   D     + +D    G  E
Sbjct: 46  VRGTVVAIENGMVLVDAGLKSESPISADEFKNAQGVLEIQVGDE--VDVALDSVEDGFGE 103

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRVEIM-AIPPDQIRNVI 567
             +  + ++AKR    I+ E +   +E+ + +      G FT  +  + A  P  + +V 
Sbjct: 104 TQL--SREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGIRAFLPGSLVDVR 161

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            +         E     + +D      + S        +     ++ +  +  +  KG V
Sbjct: 162 PVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIV 221

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R ++ L 
Sbjct: 222 KNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLG 280

Query: 687 MKVVDQNTGKPI 698
           +K + ++    I
Sbjct: 281 LKQLGEDPWLEI 292



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 181 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 240

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     + 
Sbjct: 241 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPEST 300

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 301 KLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 360

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 361 RRRISLGLKQCKVNPWDD 378



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           ++              
Sbjct: 338 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKVN----PWDDFATRY 383

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 384 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLS 443

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 444 VDPERERISLGVKQTEDDP 462



 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   G  V      +G V ++ +S ER+   S V   G
Sbjct: 461 DPFNAYLADKKKGTVVNGTVSAVDAKGVTVELADTVEGYVRVADISAERIEDASTVYTVG 520

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  + +  D + + I LS+K  D+   K  +
Sbjct: 521 DAIEARFMGVDRKNRSISLSIKAKDEAEQKEAI 553


>gi|322806046|emb|CBZ03613.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           botulinum H04402 065]
          Length = 638

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            I D    KI  S    ++  R      T    E + + +G+V +  DFGAF+      D
Sbjct: 444 FIKDRYRTKIVGSRRNILKIIRNKHIEETWNSLEKDTVVEGEVKRFTDFGAFIEI-NGVD 502

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL+H+S++S  RV K  D +K GD + V +LD D +  K+ LS+K + ++  K +
Sbjct: 503 GLLHVSEISWGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSV 557



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G VE+    + I D   V I        + A        +  +S+     +  I  G+V
Sbjct: 512 WGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSVEIKYPIGNIVLGKV 571

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I LS
Sbjct: 572 VRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSVEKRIALS 631

Query: 687 MKVVDQ 692
           +K V++
Sbjct: 632 IKDVEE 637



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       S            +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAINKMNNND-------SIIEVSKNEMLNYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++ +  +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLNYKSEGIIPKEEVTLDEESILKESFKVGDKIEAKIVRIKN 362

Query: 679 DRGKIKLSMKVV 690
           + G + LS+K +
Sbjct: 363 EDGYVVLSLKEL 374


>gi|87306426|ref|ZP_01088573.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
 gi|87290605|gb|EAQ82492.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
          Length = 636

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  ++    P  I + IG         VE    K++ +    V    S + +   
Sbjct: 155 VNVFLPASQVDIRRPSDIADYIGKK-------VECEVLKIDEERRNIVVSRRSLIEK--K 205

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++   S+    E+ +  KG V  + DFGAFV   G  DGL+HI+ +S  R+   ++VVK
Sbjct: 206 RQKDRDSLLQELEIGQRRKGVVKNIADFGAFVDL-GGIDGLLHITDMSWGRIGHPTEVVK 264

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             D V V++L+ D +R KI L MK +  +  
Sbjct: 265 IDDEVEVQILNIDHERQKIALGMKQMQPSPW 295



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 4/126 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   +++    E     +NI++D           +++       SI D  + N++ KG+
Sbjct: 430 IGHPSEMLEKGQEVECKVLNIEEDRRRIALGLKQMDLD---PWASSIPDKYQPNQLVKGK 486

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V K+ +FG FV      +GL+HIS+L+ E+V    DVVK GD + VK+L  D D  KI L
Sbjct: 487 VTKITNFGVFVGLEDGLEGLLHISELADEKVENPEDVVKVGDDIEVKILRVDTDERKIGL 546

Query: 686 SMKVVD 691
           S K V 
Sbjct: 547 SRKRVQ 552



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 23/206 (11%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP---RVEIMAIPPDQIRNVIG 568
           I + + V  L      R  I   M ++       +    P   +V    +        + 
Sbjct: 265 IDDEVEVQILNIDHE-RQKIALGMKQMQPSPWDGVEGKYPVGSKVRGQVVNVMSYGAFVK 323

Query: 569 M--GGKVIRGIVEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           +  G + +  I E +  K        VNI D+  V +   +  + E +  M ++ ++  E
Sbjct: 324 LEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQEISLGMKQTQSNPWE 383

Query: 619 VNK-------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTV 670
             K       I KG+V  + ++GAFV      DGL+H+S +S  R +   S+++++G  V
Sbjct: 384 NIKERYPVESIVKGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEV 443

Query: 671 WVKLLDF-DDRGKIKLSMKVVDQNTG 695
             K+L+  +DR +I L +K +D +  
Sbjct: 444 ECKVLNIEEDRRRIALGLKQMDLDPW 469



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA---REMIRSITDVPEVN----KIYKGQV 627
            G +      V IDD+  V+I +      + A   ++M  S  D  E         +GQV
Sbjct: 253 WGRIGHPTEVVKIDDEVEVQILNIDHERQKIALGMKQMQPSPWDGVEGKYPVGSKVRGQV 312

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKL 685
           V VM +GAFV      +GLVHIS++S  +R++  S+VV  GD + V +L  +   + I L
Sbjct: 313 VNVMSYGAFVKLEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQEISL 372

Query: 686 SMKVVDQNTGKPI 698
            MK    N  + I
Sbjct: 373 GMKQTQSNPWENI 385



 Score = 38.4 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           N++ D T+     +  +   A        +   E+NKI  G +++V D    +   G  +
Sbjct: 9   NLESDDTLTSLIDNWVQDAEANVFDEFEHEESVELNKIVDGTILRVDDEFVLIDVGGKSE 68

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--------DDRGKIKLSMKVVDQ 692
           G +   +   E         K GD + V + D         D  G I LS +   +
Sbjct: 69  GSIPRDEWDEEDEDPP----KIGDKIKVLVEDIEDEFGRTDDPHGMITLSKRKAQK 120


>gi|323142053|ref|ZP_08076901.1| putative general stress protein 13 [Phascolarctobacterium sp. YIT
           12067]
 gi|322413440|gb|EFY04311.1| putative general stress protein 13 [Phascolarctobacterium sp. YIT
           12067]
          Length = 163

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 46/73 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  + +FGAFV     + GL+HIS++S   V    D +KE D V VK+L  
Sbjct: 4   EVGAIVEGEVTGITNFGAFVQLPEGKVGLIHISEVSNVYVKDVHDFLKEHDKVKVKVLSV 63

Query: 678 DDRGKIKLSMKVV 690
           DDRGKI LS+K +
Sbjct: 64  DDRGKIGLSIKQL 76


>gi|167626886|ref|YP_001677386.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596887|gb|ABZ86885.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 561

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D        + +  A +  +     I N +    +     L  F P   +   
Sbjct: 85  GETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTR 144

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++V  +  K I   V +   K N      + ++  ++ E   + +    +  + E
Sbjct: 145 P---IKDVAHLEDKDIELKVVKIDTKRN-----NIVVSRKAVIEENNSGDRDAMLEKISE 196

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + + +G V  + DFGAF+   G  DGL+HI+ +S  R++  +DV+  G  ++VK++ FD
Sbjct: 197 GS-VLQGIVKNITDFGAFIDL-GGVDGLLHITDISWSRISHPTDVLSIGQEIYVKVIKFD 254

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            ++ +I L +K + ++    I 
Sbjct: 255 KEKQRISLGIKQLGEDPWLNIA 276



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVK 665
           +  ++  ++     + KG V KV D GA V        DG + IS++S E      D + 
Sbjct: 443 DPFKNFINIHPKGSLVKGNVTKVQDNGAVVMLDADNNIDGFIRISEISAEHTKDVRDELS 502

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           EG  V  ++++ D + + I LS+K VD++
Sbjct: 503 EGQEVEARIINIDAKKRSIALSIKAVDED 531



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  ++ E +    ++ L+       ++ +          I +GG   +  I + + +++
Sbjct: 174 SRKAVIEENNSGDRDAMLEKISEGSVLQGIVKNITDFGAFIDLGGVDGLLHITDISWSRI 233

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I  +  VK+      +   +        +   +I +   V     G V  + 
Sbjct: 234 SHPTDVLSIGQEIYVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNIT 293

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+G FV      +GLVH S++    +       V  G  V V +L+ D D  +I L +K 
Sbjct: 294 DYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQ 353

Query: 690 VDQNTG 695
              N  
Sbjct: 354 CRANPW 359



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +      G++  + +FG F+   G  DGLVHIS ++ +  AK    +K+GD
Sbjct: 358 PWNEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGD 417

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   L+  + D  +I LSMK + ++ 
Sbjct: 418 DVEAVLVSVNTDLERIALSMKQLSEDP 444


>gi|312384431|gb|EFR29163.1| hypothetical protein AND_02133 [Anopheles darlingi]
          Length = 1308

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLS 653
            +        R+    + + PEV KIY  +VV ++ FG FV   G    ++GLVHISQLS
Sbjct: 324 MAPPPAAIERRQRTPPMPEEPEVGKIYDARVVNIVAFGCFVQLVGFRRKKEGLVHISQLS 383

Query: 654 TE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           TE RV   +DVV  GD V VK++      KI LSMK V+Q+TG+ +
Sbjct: 384 TEGRVNLVTDVVNRGDDVKVKVMSLAG-NKISLSMKEVEQSTGRDL 428


>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 246

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 100/243 (41%), Gaps = 12/243 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R   + +        GSS   +G+ + I +V  G +E    +
Sbjct: 5   EIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVK-GPKEP--RL 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S   T +    +  N    +  E S+      RR +       R     +         
Sbjct: 62  KSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTV 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I   + E DG    + + G +LAL+DAG+ +   ++GI++GL     D   L D +  
Sbjct: 122 IDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY----DTTPLLDTNSL 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEMSKVLS 540
           +E+ +  +   V G    ++ + ++ KI       ++ + +  A R R  +++E  +  +
Sbjct: 178 EENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVR-DLMDEELRKHA 236

Query: 541 ESR 543
           + R
Sbjct: 237 QKR 239



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 80/208 (38%), Gaps = 12/208 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G   ++  V   +  +           L V+     ++  +      + E 
Sbjct: 36  ADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNER 95

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           R  E +  + RM ++++  + +   +    + I+V++ D      +  +   + AL+ +G
Sbjct: 96  RVLEIQTSLVRMFEKNV--MLNIYPRTVIDIEIHVLEQDGGIMGSL--INGITLALIDAG 151

Query: 143 LPFEGPVVGAQVDYINGQYVLNPRLDEDQ--GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
           +     + G  V   +   +L+    E+    ++ L V G  + + ++ +E   +  D +
Sbjct: 152 ISMFDYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDK-IPLDRL 210

Query: 201 LDAIIFGHNECKPVIEAI-SKLAKMCAK 227
            + +  G      V + +  +L K   K
Sbjct: 211 ENVLAIGIAGAHRVRDLMDEELRKHAQK 238


>gi|153825197|ref|ZP_01977864.1| ribosomal protein S1 [Vibrio cholerae MZO-2]
 gi|149741176|gb|EDM55227.1| ribosomal protein S1 [Vibrio cholerae MZO-2]
          Length = 544

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +   V  I  G V         S I  ++  +  G ++ +V               
Sbjct: 8   QGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGF 67

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      +  ++  A ++A      I  ++    +     +  F P      +
Sbjct: 68  GETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSL---V 124

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               IR+   +  K +   V +   K N      V ++  ++ E E++ E    +  + E
Sbjct: 125 DVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESESSVERDELLETLQE 179

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD
Sbjct: 180 GTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFD 237

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + ++    I 
Sbjct: 238 RDRTRVSLGLKQLGEDPWVAIA 259



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 263 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 321

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 322 DIDEERRRISLGLKQCKANPWQ 343



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 427 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 486

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 487 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 519



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 304 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 349

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 350 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 408

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 409 AVDAERERISLGIKQMENDP 428


>gi|259910055|ref|YP_002650411.1| putative transcriptional accessory protein [Erwinia pyrifoliae
           Ep1/96]
 gi|224965677|emb|CAX57209.1| putative transcriptional accessory protein [Erwinia pyrifoliae
           Ep1/96]
 gi|283480154|emb|CAY76070.1| Protein yhgF [Erwinia pyrifoliae DSM 12163]
          Length = 775

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|238506893|ref|XP_002384648.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           flavus NRRL3357]
 gi|220689361|gb|EED45712.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           flavus NRRL3357]
          Length = 1229

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVH 648
             +       +    +     + D P + K+Y G+V  V DFGAFV+  G +   DGLVH
Sbjct: 232 RRQRRHDRSQDDHFRKPPPVELDDAPILYKVYDGRVTGVKDFGAFVNLSGVKGKVDGLVH 291

Query: 649 ISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +S +    RV   SD+V  G  V VK++      +I LSMK VDQ TG  ++
Sbjct: 292 VSAMQEGARVNHPSDLVSRGQPVKVKVISIQGS-RIGLSMKEVDQVTGLDLI 342


>gi|212703198|ref|ZP_03311326.1| hypothetical protein DESPIG_01240 [Desulfovibrio piger ATCC 29098]
 gi|212673464|gb|EEB33947.1| hypothetical protein DESPIG_01240 [Desulfovibrio piger ATCC 29098]
          Length = 487

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
            V+ DD G  +I+ S     +A  +      D      + +G+VV++  FGAFV      
Sbjct: 257 SVSKDDKGRTRISLSRK---KAEGDPWLQAADRLAAGTVVEGKVVRIAPFGAFVELLPGV 313

Query: 644 DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           +GLVH+S++S  +RV K  DVV  GD + VK+ + + +  +I LS++  + +  + 
Sbjct: 314 EGLVHLSEMSWTKRVNKAEDVVNVGDVISVKIKEINVESRRISLSLRDAEGDPWQD 369



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 17/226 (7%)

Query: 476 LSDISGDEDHLGH--MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           + D  G+E       ++  V GT +G   +   M   G++   +  A          +  
Sbjct: 66  ILDAEGNESVAPGDSIEVYVVGTSAGEIRLSRSMSGAGMAA--LEDARDAGVPVDGRVTG 123

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
                 + S +    F P  ++ ++       ++G   + ++ ++      + +++ G  
Sbjct: 124 TCKGGYTVSVMGKNAFCPGSQMDSVSVADAEALVG---RTMQFLI------IRVENRGRN 174

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            + S         +E +  +     V    +G++ ++  FGAF+      +G++H+S+LS
Sbjct: 175 IVVSRRALLDRERQENLEKVLASLNVGDTVEGRITRLASFGAFMELAPGVEGMIHLSELS 234

Query: 654 TERVAKTSDVVKEGDTVWVKLLDF--DDRG--KIKLSMKVVDQNTG 695
             RV    + V  GD V  KLL    DD+G  +I LS K  + +  
Sbjct: 235 WSRVNSADEAVAVGDVVRAKLLSVSKDDKGRTRISLSRKKAEGDPW 280


>gi|187933135|ref|YP_001884732.1| protein tex [Clostridium botulinum B str. Eklund 17B]
 gi|187721288|gb|ACD22509.1| tex domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 723

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+   V G+        + +   K +I  +                 +         +
Sbjct: 588 DIDKRAEVNGINKLSNDLDIGELTLK-DIIKELKKPGRDPRDEMPTPILKTGIIELKDLK 646

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D
Sbjct: 647 PGMILNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVSILEVD 706

Query: 679 -DRGKIKLSMKVVD 691
             R +I LSMK VD
Sbjct: 707 QKRKRISLSMKDVD 720


>gi|322517175|ref|ZP_08070058.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124]
 gi|322124234|gb|EFX95750.1| 30S ribosomal protein S1 [Streptococcus vestibularis ATCC 49124]
          Length = 430

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 298 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 357

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ + D  ++ LS+K +++   
Sbjct: 358 DVTVKVLEVNADAERVSLSIKALEERPA 385



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+  +D      I S        A E  + +    EV  I  G+V ++  F
Sbjct: 178 QFVGQEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSF 237

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD V VK+L  D+  G++ LS+K    
Sbjct: 238 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTP 296

Query: 693 NTG 695
              
Sbjct: 297 GPW 299



 Score = 37.2 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           E + +         +   +V+ V +  A V   G   +G++   +L+ +R A  +D+VK 
Sbjct: 35  EELLNSVSEVNTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELTNDRDANVADLVKV 94

Query: 667 GDTVWVKLL 675
           G+T+ V +L
Sbjct: 95  GETLEVLVL 103


>gi|329929826|ref|ZP_08283502.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
 gi|328935804|gb|EGG32265.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
          Length = 405

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +R  V++    ++ +++  +      L E   A    + +    
Sbjct: 143 VERHFVEDFSDYKGRTLRVKVKE----LDRENNKVILSQKDVLEEEFEA--NKQKVMSEL 196

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ +G V ++  FGAFV   G  DGLVH+S+++   V K SDV+ EGD V VK+L  
Sbjct: 197 QDGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKV 255

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++GKI LS+K       +
Sbjct: 256 DPEKGKISLSIKAAAPGPWE 275



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+  +V+  G        +Q   KV   D    KI+ S  A   AA     +  +   
Sbjct: 234 HVDKPSDVLSEG--------DQVRVKVLKVDPEKGKISLSIKA---AAPGPWETAGEQFN 282

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I  G V +++ FGAFV      +GLVHISQ+S + +    +V+KEG  V VK+LD +
Sbjct: 283 TGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDIN 342

Query: 679 -DRGKIKLSMKVVDQNTGK 696
               +I LS+K  ++   +
Sbjct: 343 TSEQRISLSIKETEEAPAQ 361



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            S     + A E    +  +  + K    KG +VK+ D  A+V      DG++ + +LS+
Sbjct: 1   MSEETRNQEAAENQEQLDQIVSLKKGDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSS 60

Query: 655 ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD-QNTGKPI 698
            ++   SD V+ G  V  K++   DD+  + LS + +D +N+ + +
Sbjct: 61  VQLDNASDAVQVGQEVECKVVSINDDKESLVLSKRAIDTENSWEEL 106


>gi|17535281|ref|NP_495019.1| Masculinisation Of Germline family member (mog-5) [Caenorhabditis
           elegans]
 gi|2500543|sp|Q09530|MOG5_CAEEL RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase mog-5; AltName: Full=Masculinization of
           germline protein 5; AltName: Full=Sex determination
           protein mog-5
 gi|733602|gb|AAC46765.1| Masculinisation of germline protein 5, confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|9864170|gb|AAG01332.1| sex determining protein MOG-5 [Caenorhabditis elegans]
          Length = 1200

 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 4/84 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           E+ KIY G+V  +  FGAF+   G R   +GLVHISQ+  ERV   +DV+K G+ V VK+
Sbjct: 232 EIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKV 291

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698
               + GKI LSMK VDQN+G+ +
Sbjct: 292 NKI-ENGKISLSMKEVDQNSGEDL 314


>gi|315178828|gb|ADT85742.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218]
          Length = 526

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E+  + +G V  V +FGAFV     +DGLVHIS L+   V+   DVVK GD V 
Sbjct: 400 NEVSDLEIGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPRDVVKAGDIVK 459

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 460 VKVMEVDVQRKRIALSMRLNDEP 482


>gi|291542424|emb|CBL15534.1| Transcriptional accessory protein [Ruminococcus bromii L2-63]
          Length = 715

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 13/126 (10%)

Query: 565 NVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           +V+G+G   +  IV E +    +  D+    +  S + +I+  +E +             
Sbjct: 600 DVLGIGLPTLNDIVKELSKPGRDPRDELPAPMLRSDILDIKDLKEGME-----------L 648

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFGAFV     +DGLVHISQ+  + +   S+V+K GD V VK+L  D ++ +
Sbjct: 649 KGTVRNVIDFGAFVDIGVHQDGLVHISQICDKYIKHPSEVLKVGDVVNVKVLSVDPEKNR 708

Query: 683 IKLSMK 688
           I L+M+
Sbjct: 709 ISLTMR 714


>gi|121591424|ref|ZP_01678703.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
 gi|121546719|gb|EAX56895.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
          Length = 542

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS---------- 498
            G  +   V  I  G V         S I  ++  +  G ++ +V               
Sbjct: 6   QGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGF 65

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      +  ++  A ++A      I  ++    +     +  F P      +
Sbjct: 66  GETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSL---V 122

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               IR+   +  K +   V +   K N      V ++  ++ E E++ E    +  + E
Sbjct: 123 DVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESESSVERDELLETLQE 177

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD
Sbjct: 178 GTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFD 235

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            DR ++ L +K + ++    I 
Sbjct: 236 RDRTRVSLGLKQLGEDPWVAIA 257



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 261 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 319

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 320 DIDEERRRISLGLKQCKANPWQ 341



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 425 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 484

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 485 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 517



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 302 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 347

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 348 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 406

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 407 AVDAERERISLGIKQMENDP 426


>gi|310765657|gb|ADP10607.1| putative transcriptional accessory protein [Erwinia sp. Ejp617]
          Length = 775

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|321311760|ref|YP_004204047.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
 gi|291484714|dbj|BAI85789.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
 gi|320018034|gb|ADV93020.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
          Length = 382

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +  +V +        D   V ++  ++ E E A +    +  + 
Sbjct: 132 VEAHFVEDFTDYKGKTLSLLVVELDR-----DKNRVILSHRAVVESEQANKKQELLQSL- 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K         I
Sbjct: 245 DRDNERISLSIKDTLPGPWSQI 266



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           TV VK+LD ++   +I LSM+ +++  
Sbjct: 322 TVKVKVLDVNENEERISLSMRELEETP 348



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVVK 
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|255011564|ref|ZP_05283690.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           3_1_12]
          Length = 101

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 2/100 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +   I+ A  +I+ I  VPE+ ++YKG+V  +M +GAFV F   +DGL+HIS++  +R+ 
Sbjct: 1   NKKSIDDAIRLIKGIVAVPEIGEVYKGKVRSIMPYGAFVEFLPGKDGLLHISEIDWKRLE 60

Query: 659 KTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
              +  +KEGD + VKL+D D + GK KLS KV+     K
Sbjct: 61  TVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPEK 100


>gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec]
 gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
          Length = 493

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS         +I KG V  +++FGAFV 
Sbjct: 181 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVD 240

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 241 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWR 298



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + ++  G
Sbjct: 258 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRQFARTHAIGQVVPG 312

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D DR +I 
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRIS 372

Query: 685 LSMKVVDQNT 694
           LS+K  ++ +
Sbjct: 373 LSLKQANEAS 382



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 50  DIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDK 109

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 110 EGRLILSKKRAQ 121


>gi|319760512|ref|YP_004124450.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
 gi|318039226|gb|ADV33776.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
          Length = 575

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 11/202 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      S   +  A +        I  ++    +     +  F P   +   
Sbjct: 80  GETVLSREKAKRLESWLFLEQAYRDTTTVEGIINGKVKGGFTVELNGIRAFLPGSLVDVR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P     ++ G        I E    K++   +  V    +++    +A E  + +  + E
Sbjct: 140 PIKDTLDLEG-------QICEFKVIKLDYKRNNVVVSRRAAIESENSA-ERDQLLNKLHE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + KG V  + D+GAF+   G  DGL+HI+ +S +RV   SDV+  GD++ VK+L FD
Sbjct: 192 GV-VLKGLVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSDVINIGDSITVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
            +R ++ L +K +  +    ++
Sbjct: 250 KERIRVSLGLKQLQDDPWASVI 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-------AREMIRSITDVPEVNKIYKGQV 627
              V+     +NI D  TVK+       I           +   S+    +      G+V
Sbjct: 225 WKRVKHPSDVINIGDSITVKVLKFDKERIRVSLGLKQLQDDPWASVIHNYKEGDKLVGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + D+G F+   G  +GLVHIS++    +  + S VV  GD + V +LD D DR +I L
Sbjct: 285 TNLTDYGCFIEIKGGVEGLVHISEMDWTNKNIQPSKVVAIGDLIEVIVLDIDKDRRRISL 344

Query: 686 SMKVVDQNTGK 696
            +K    N  +
Sbjct: 345 GLKQCKINPWQ 355



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G +I  IV      ++ID D           +I   ++     T   
Sbjct: 316 IQPSKVVAI----GDLIEVIV------LDIDKDRRRISLGLKQCKINPWQKFSEMYTR-- 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWVKLLD 676
                  G++  V DFG F+   G  DGLVH+S +S + V + S +  K+GD +   +L 
Sbjct: 364 --GDKVSGKIKSVTDFGIFIGLEGGIDGLVHLSDISWDMVNEESINKYKKGDEIEAVVLQ 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I LS+K + ++ 
Sbjct: 422 VDIERERISLSIKQLTEDP 440


>gi|325576610|ref|ZP_08147328.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
 gi|325161173|gb|EGC73288.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
          Length = 772

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 587 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 641

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD
Sbjct: 642 EGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGD 701

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 702 IVKVKVLEVDVPRKRIALTMR-LDESAVK 729


>gi|284008801|emb|CBA75552.1| transcription accessory protein [Arsenophonus nasoniae]
          Length = 774

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +V  I +G V  V +FGAFV     +DGLVHIS LS + +     +VK GD + 
Sbjct: 643 ETMEDLKVGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFIKDPHSLVKAGDIIT 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTG 695
           VK++D D +R +I L+M+ +D+ T 
Sbjct: 703 VKVIDIDLNRKRIALTMR-LDEKTA 726


>gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4]
          Length = 299

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   V +D +    I S          +  + + +  + +++ +G V ++ DFGAFV   
Sbjct: 70  TFKIVELDQEKNRLILSHRAVVESEKEQKKKQLLESLKQDQVLEGTVQRITDFGAFVDI- 128

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  DGLVHISQLS E V K +DVV EG  V VK+L  D D  +I LS+K         I 
Sbjct: 129 GGVDGLVHISQLSHEHVEKPTDVVAEGQAVKVKVLSVDRDNERISLSIKETLPGPWSEIA 188



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +      + +G+V +++ +GAF+      +GLVHISQLS + V    +V++EG 
Sbjct: 183 PWSEIANRASKGSVLEGEVKRIVSYGAFIELFPGVEGLVHISQLSHKHVGTPHEVLQEGQ 242

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +V VK+LD + D  ++ LS+K +++   + +
Sbjct: 243 SVKVKVLDVNEDDQRLSLSIKELEEKPVQEV 273


>gi|218294649|ref|ZP_03495503.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
 gi|218244557|gb|EED11081.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
          Length = 125

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 45/76 (59%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   I +G+VV+V DFGAFV   G   GLVHISQ++ E V    D + EGD V V +
Sbjct: 1   MEIEAGSIVEGRVVRVTDFGAFVELPGGEQGLVHISQIAHEFVRNVRDFLNEGDIVQVMV 60

Query: 675 LDFDDRGKIKLSMKVV 690
              D +G++ LS+K +
Sbjct: 61  KGRDPKGRLDLSIKDL 76


>gi|187777235|ref|ZP_02993708.1| hypothetical protein CLOSPO_00782 [Clostridium sporogenes ATCC
           15579]
 gi|187774163|gb|EDU37965.1| hypothetical protein CLOSPO_00782 [Clostridium sporogenes ATCC
           15579]
          Length = 718

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV- 616
           +  ++++++     +V    ++    K++I     + I           RE +       
Sbjct: 581 VKNNKLQDI---DARVNNTGIDHICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKT 637

Query: 617 -------PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   + + I  G V  V DFGAFV     +DGLVHISQLS   V    DVVK GD 
Sbjct: 638 GIVDITQLKPDMILMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDI 697

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V++L+ D  R +I LSMK
Sbjct: 698 VEVRILEVDQKRNRISLSMK 717


>gi|161831346|ref|YP_001596460.1| 30S ribosomal protein S1 [Coxiella burnetii RSA 331]
 gi|81629367|sp|Q83E09|RS1_COXBU RecName: Full=30S ribosomal protein S1
 gi|161763213|gb|ABX78855.1| ribosomal protein S1 [Coxiella burnetii RSA 331]
          Length = 551

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +  +  I+  +    +     +  F P   +   P           G +   
Sbjct: 94  LEKAYKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVKPVRDP-------GYLEDK 146

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            ++    K++   +  V    + +    +A E    + ++ E  +I KG +  + D+GAF
Sbjct: 147 EIDFKIIKMDQRRNNVVVSRRAVMEAETSA-ERQARLEELQEGQEI-KGVIKNITDYGAF 204

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   SD++  GD V VK+L FD D+ ++ L MK +  +  
Sbjct: 205 VDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPW 263

Query: 696 KPI 698
             I
Sbjct: 264 AKI 266



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  ++   +    ++RL+  +    ++ +          + +GG     
Sbjct: 155 MDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLL 214

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNK 621
               +  G V+     +N+ D+  VK+               + A +    I     VN 
Sbjct: 215 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 274

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH S+L    +    S VV+ G+ V V +L+ D +
Sbjct: 275 RVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEE 334

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K   +N  + 
Sbjct: 335 RRRISLGIKQCKRNPWQE 352



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +    R   +   +  E ++   G+V  + DFG F+   G  D
Sbjct: 329 LEIDEERRRISLGIKQCK----RNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDID 384

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S        + +   K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 385 GLVHLSDISWT--ESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEGDP 436



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +  + + + + +V +V    A +       G + ++  + +RV   +  +  G
Sbjct: 435 DPFMEFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVG 494

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V VK+++ D + + I +S K V+  + K
Sbjct: 495 DEVAVKIVNVDRKNRLINVSHKAVEGRSEK 524


>gi|328876888|gb|EGG25251.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 1152

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 4/92 (4%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVKE 666
            + +    E+NKIY G++  + D+G FV   G    ++GLVH+SQ++  R+   S++VK 
Sbjct: 189 RKELDKDAELNKIYSGRITTINDYGCFVSLEGIVGKKEGLVHVSQITKARINNPSEIVKR 248

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              V VK+L      ++ LS+K VDQ TG+ +
Sbjct: 249 NQNVKVKVLSVVGS-RVSLSIKDVDQETGRDL 279


>gi|312213828|emb|CBX93830.1| similar to ATP-dependent RNA helicase DHX8 [Leptosphaeria maculans]
          Length = 1218

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           R     + D P + K+Y G+V  + DFG FV+  G R   DGLVH++Q+    RV   SD
Sbjct: 239 RPPTPELDDEPLLYKVYDGKVTGIKDFGVFVNLQGVRGKVDGLVHVTQMLEGARVNHPSD 298

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V     V VK++   + GKI LSMK VDQ TG  + 
Sbjct: 299 LVSRWQEVKVKVIKM-EGGKISLSMKEVDQRTGHDLA 334


>gi|306833370|ref|ZP_07466497.1| 30S ribosomal protein S1 [Streptococcus bovis ATCC 700338]
 gi|304424140|gb|EFM27279.1| 30S ribosomal protein S1 [Streptococcus bovis ATCC 700338]
          Length = 398

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLTTGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+LD +    ++ LS+K +++   +
Sbjct: 328 EVNVKVLDVNAAAERVSLSIKALEERPAQ 356



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P   I           +G      +    +    V  ++   +        +  A
Sbjct: 129 LRGFIPASMIDTRFVRNTEKFVG------QEFEAKIKEVVPAENRFILSRREVVEEKAAA 182

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AR  + S     E   I KG+V ++  FGAF+   G  DGLVH+++LS ER      VV 
Sbjct: 183 ARNEVFSN---LEEGAIVKGKVARLTSFGAFIDL-GGVDGLVHVTELSHERNVSPKSVVS 238

Query: 666 EGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
            G+ V VK+L  D+  G++ LS+K       
Sbjct: 239 VGEEVEVKVLSIDEEAGRVSLSLKATTPGPW 269


>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 486

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 31/268 (11%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
             +A +   +    D  II   +   +     +D  V     G+   +       I+ + 
Sbjct: 22  DLIAAVDATIKYFNDGDIIEGTVVKVDHDEVLLD--VGYKTEGVIPSKELSIKHDINPDE 79

Query: 517 MVMALQQAKRGRLHILNEMSKVL-SESRLQLGEFTPRVEIMA------------IPPDQI 563
           +V    Q +   L   ++  ++L S+ R Q      ++E +             +    +
Sbjct: 80  VVEVGDQVEALVLQKEDKEGRLLLSKKRAQYERAWSQIEEVKEADGVVTGTVIEVVKGGL 139

Query: 564 RNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
              IG+ G +   +VE             +  AK+   D     +  S  + +E  +   
Sbjct: 140 ILDIGLRGFLPASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQA 199

Query: 611 RSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           R       +  ++  G +  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  
Sbjct: 200 RGEFLTNLKKGQVRDGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQK 258

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V V++LD D DR ++ LS+K   ++  +
Sbjct: 259 VTVEVLDVDMDRERVSLSLKATQEDPWQ 286



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VVK G
Sbjct: 283 DPWQTFARTHGIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVG 342

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + V+VK++D D +R +I LS+K  ++
Sbjct: 343 EDVFVKVIDIDLERRRISLSLKQANE 368


>gi|331268721|ref|YP_004395213.1| rpsA [Clostridium botulinum BKT015925]
 gi|329125271|gb|AEB75216.1| rpsA [Clostridium botulinum BKT015925]
          Length = 387

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    ++++     KV++  V      +  D+     + S    E++  +     + D 
Sbjct: 144 QISISFVKDLTSFVEKVLKVKV------IEFDEKKNKVVLSGKEVELKERQNKKEKVLDS 197

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  +   G V ++  FGAFV   G  DGL+H S LS +RV   S+VVK GD V V +L 
Sbjct: 198 LKNGEKRTGIVRRLAKFGAFVDL-GGVDGLIHNSDLSWKRVNDPSEVVKVGDKVEVYVLK 256

Query: 677 FD-DRGKIKLSMKVVDQNTGKPIV 699
           FD ++GKI LS+K ++++    I+
Sbjct: 257 FDKEKGKIALSLKDIEEDPWNNII 280



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +I    +VN I +G+VVK++DFGAFV      +GLVHI++++ E + K S+V+  G
Sbjct: 274 DPWNNIITKHKVNDIVEGKVVKLLDFGAFVEIEAGVEGLVHITEITDEHIGKPSEVLNIG 333

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D V VK+L+ + +  KI LS+K  +    + I
Sbjct: 334 DKVKVKILEINKEDKKIALSIKEAENRISEKI 365



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +S+ E+  A +             I +G+V+ V      V+     DG++  +++  E 
Sbjct: 8   ETSMEEMMKAIDETMKPIYS---GDIVEGEVISVSTNEVLVNIGYINDGIIKKNEICNED 64

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
               ++ +K+GD + V ++  ++  G + LS K  D
Sbjct: 65  -EDINNFIKQGDKIEVFIVKLNEGEGNVVLSKKKAD 99


>gi|301155420|emb|CBW14886.1| predicted transcriptional accessory protein [Haemophilus
           parainfluenzae T3T1]
          Length = 770

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD
Sbjct: 640 EGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGD 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|292489911|ref|YP_003532801.1| protein YhgF [Erwinia amylovora CFBP1430]
 gi|292900947|ref|YP_003540316.1| transcription accessory protein [Erwinia amylovora ATCC 49946]
 gi|291200795|emb|CBJ47929.1| putative transcription accessory protein [Erwinia amylovora ATCC
           49946]
 gi|291555348|emb|CBA23713.1| Protein yhgF [Erwinia amylovora CFBP1430]
          Length = 777

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|311694257|gb|ADP97130.1| ribosomal S1 synthesis/modification protein [marine bacterium HP15]
          Length = 564

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +  ++  + +  +  +  I  ++    +     +
Sbjct: 68  VDVALDAVEDGFGETRLSREKAKRAEAWKVLEKSFEAEEVVKGIINGKVKGGFTVDLAGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   +  K +   V +   K N      V ++  ++ E E +
Sbjct: 128 RAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVLEAENS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E  +I KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  
Sbjct: 180 AEREALLETLTEGMEI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 238 GDEISVKVLKFDRERNRVSLGLKQLGEDPWVDI 270



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 19/199 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+       ++ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVLEAENSAEREALLETLTEGMEIKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--------REMIRSITDVPEVN 620
               +    ++     VN+ D+ +VK+          +           +      PE +
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEISVKVLKFDRERNRVSLGLKQLGEDPWVDIKGRYPEGS 278

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           K+ K +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+
Sbjct: 279 KV-KARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVDVMILDIDE 337

Query: 680 -RGKIKLSMKVVDQNTGKP 697
            R +I L +K    N  + 
Sbjct: 338 ERRRISLGIKQCVSNPWED 356



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V   G +V   I       ++ID++                       +   
Sbjct: 316 IHPSKVVQV---GDEVDVMI-------LDIDEERRRISLGIKQCVSN----PWEDFSSNF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S          +  K+GD V   +L
Sbjct: 362 NKGDRISGKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREY-KKGDEVETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGIKQLESDP 440



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       + +   I KG V  V    A +      + ++  S++S +RV    + +KEG
Sbjct: 439 DPFAEFVQLNDKGSIVKGTVSAVDAKAATIALNDEVEAVLKASEISRDRVEDARNALKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + V  K++  D + + I LS+K  D
Sbjct: 499 EEVEAKIISIDRKNRIINLSVKSKD 523


>gi|296332972|ref|ZP_06875429.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674924|ref|YP_003866596.1| RNA degradation presenting factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149823|gb|EFG90715.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413168|gb|ADM38287.1| RNA degradation presenting factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 382

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +  +V +        D   V ++  ++ E E A +    +  + 
Sbjct: 132 VEAHFVEDFTDYKGKTLSLLVVELDR-----DKNRVILSHRAVVESEQANKKQELLQSL- 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K         I
Sbjct: 245 DRDNERISLSIKDTLPGPWSQI 266



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           TV VK+LD ++   +I LSM+ +++  
Sbjct: 322 TVKVKVLDVNENEERISLSMRELEEAP 348



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVVK 
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|240950293|ref|ZP_04754568.1| transcriptional accessory protein [Actinobacillus minor NM305]
 gi|240295195|gb|EER46003.1| transcriptional accessory protein [Actinobacillus minor NM305]
          Length = 778

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 ++  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EEIQDLKLGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSDRFVDDPHTVVKAGDVVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK+L+ D  R +I L+M+ +D++TG+
Sbjct: 710 VKVLEVDVARKRIALTMR-LDESTGE 734


>gi|153207789|ref|ZP_01946389.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
 gi|165924110|ref|ZP_02219942.1| ribosomal protein S1 [Coxiella burnetii RSA 334]
 gi|120576341|gb|EAX32965.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
 gi|165916449|gb|EDR35053.1| ribosomal protein S1 [Coxiella burnetii RSA 334]
          Length = 551

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +  +  I+  +    +     +  F P   +   P           G +   
Sbjct: 94  LEKAYKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVKPVRDP-------GYLEDK 146

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            ++    K++   +  V    + +    +A E    + ++ E  +I KG +  + D+GAF
Sbjct: 147 EIDFKIIKMDQRRNNVVVSRRAVMEAETSA-ERQARLEELQEGQEI-KGVIKNITDYGAF 204

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   SD++  GD V VK+L FD D+ ++ L MK +  +  
Sbjct: 205 VDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPW 263

Query: 696 KPI 698
             I
Sbjct: 264 AKI 266



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  ++   +    ++RL+  +    ++ +          + +GG     
Sbjct: 155 MDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLL 214

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNK 621
               +  G V+     +N+ D+  VK+               + A +    I     VN 
Sbjct: 215 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 274

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH S+L    +    S VV+ G+ V V +L+ D +
Sbjct: 275 RVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEE 334

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K   +N  + 
Sbjct: 335 RRRISLGIKQCKRNPWQE 352



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +    R   +   +  E ++   G+V  + DFG F+   G  D
Sbjct: 329 LEIDEERRRISLGIKQCK----RNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDID 384

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S        + +   K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 385 GLVHLSDISWT--ESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEGDP 436



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +  + + + + +V +V    A +       G + ++  + +RV   +  +  G
Sbjct: 435 DPFMEFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVG 494

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V VK+++ D + + I +S K V+  + K
Sbjct: 495 DEVAVKIVNVDRKNRLINVSHKAVEGRSEK 524


>gi|147749|gb|AAA24596.1| polynucleotide phosphorylase [Escherichia coli]
          Length = 62

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 1  MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT 60
          M +    + ++    + LETG +ARQ+  AV+ +  +T V  TVV  +  K GQDFFPLT
Sbjct: 1  MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60

Query: 61 VN 62
          VN
Sbjct: 61 VN 62


>gi|42837|emb|CAA23630.1| unnamed protein product [Escherichia coli]
          Length = 556

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 12/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V    + +    
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN----NVVVSRRAVIESEN 178

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +A + +     + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 179 SADDQLLEN--LQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 235 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 270



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 436 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 495

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 496 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 530



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 196 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 250

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 251 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 310

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 311 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 366

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 367 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 425

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 426 ERISLGVKQLAEDP 439



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 221 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 280

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 281 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 340

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 341 ISLGLKQCKANPWQ 354


>gi|312174095|emb|CBX82348.1| Protein yhgF [Erwinia amylovora ATCC BAA-2158]
          Length = 777

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|296105102|ref|YP_003615248.1| putative transcription accessory protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059561|gb|ADF64299.1| putative transcription accessory protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|145549828|ref|XP_001460593.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428423|emb|CAK93196.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1111

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKE 666
            +      E   IY+G V KV DFG FV   G +   +GLVHIS +  +RV    D++K 
Sbjct: 168 PQRTHRDIEKGHIYEGVVTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKR 227

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              V+VK++   +  KI LSM+ VDQN+G+ I
Sbjct: 228 NQKVFVKVISIVNE-KIALSMRDVDQNSGQEI 258


>gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
          Length = 480

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  + E+ ++  +  +  ++ KG V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQ 288



 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWQQFARTHQIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D ++VK++D D +R +I LS+K  ++  G  +
Sbjct: 345 DEIFVKIIDIDLERRRISLSLKQANEGVGADV 376



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +     ++VVK GD V   +L   D 
Sbjct: 40  DIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVKVGDHVEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|260771983|ref|ZP_05880900.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
 gi|260612850|gb|EEX38052.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
          Length = 773

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     EV  I +G V  V +FGAFV     +DGLVHIS L+   +A   DVVK GD V 
Sbjct: 643 NEMKDLEVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFIADPRDVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDAQRKRIALSMRLNDEP 725


>gi|197286718|ref|YP_002152590.1| transcription accessory protein [Proteus mirabilis HI4320]
 gi|194684205|emb|CAR45692.1| putative transcription accessory protein [Proteus mirabilis HI4320]
          Length = 777

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 4/161 (2%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKV-NIDDDG 591
           + S V  E+   +      +    I      + +         + EQ G   + +I  + 
Sbjct: 563 DASTVHPEAYPIVENILQSIHQ-KIDQVMGNSALLSQINAREFVTEQFGLPTINDILKEL 621

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                        A         +      I +G V  V +FGAFV     +DGLVHIS 
Sbjct: 622 AKPGRDPRPEFKTATFAEGVETMNDLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISS 681

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           LS   V     VVK GD V VK+L+ D  R +I L+M++ +
Sbjct: 682 LSDRFVEDPHTVVKTGDIVKVKVLEVDLPRKRIALTMRLDE 722


>gi|42900|emb|CAA23644.1| S1 ribosomal protein [Escherichia coli]
          Length = 556

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 12/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V    + +    
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN----NVVVSRRAVIESEN 178

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +A + +     + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 179 SADDQLLEN--LQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 235 NVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIA 270



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 436 AEDPFNNWVALNKKGVIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 495

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 496 VGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 530



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 196 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 250

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 251 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 310

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 311 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKGDRV 366

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 367 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 425

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 426 ERISLGVKQLAEDP 439



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 221 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 280

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 281 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 340

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 341 ISLGLKQCKANPWQ 354


>gi|261368046|ref|ZP_05980929.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Subdoligranulum
           variabile DSM 15176]
 gi|282570035|gb|EFB75570.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Subdoligranulum
           variabile DSM 15176]
          Length = 639

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIE-------AAREMIRSITDVPEVNKIYKGQVVKV 630
           ++     VN+ D+  V + S      +               + +   V   +   VV +
Sbjct: 511 IKHPSEVVNVGDEIEVYVKSYDPENQKVSLGYKKEEDNPWVKLENEVPVGTEFTAPVVSI 570

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             FGAFV      DGLVHIS++S ERV K SDV+K GD V VKL + D DR +I LSMK 
Sbjct: 571 TKFGAFVRIMPGIDGLVHISEISNERVNKVSDVLKVGDEVRVKLTNVDFDRKRISLSMKA 630

Query: 690 -VDQNTGKP 697
            ++++    
Sbjct: 631 CLNEDESAE 639



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +        ++      +  +   +  F PR +      +    ++G    V   
Sbjct: 383 VAEAAENGTVMEGDVMEANKGGVVVNVKGVRVFVPRSQATMRRDEDYTKLVGQ--HVKLV 440

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I E  G K+       V   +   AE   A+          EV K Y+G V  +  +GAF
Sbjct: 441 ITECAGRKI-------VGSINKVTAEANKAK--REEFWANVEVGKKYQGVVKSLTSYGAF 491

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           V   G  DGL HIS+LS   +   S+VV  GD + V +  +D    K+ L  K  + N  
Sbjct: 492 VDI-GGVDGLCHISELSWSNIKHPSEVVNVGDEIEVYVKSYDPENQKVSLGYKKEEDNPW 550


>gi|307704664|ref|ZP_07641564.1| 40S ribosomal protein S1 [Streptococcus mitis SK597]
 gi|307706411|ref|ZP_07643221.1| 40S ribosomal protein S1 [Streptococcus mitis SK321]
 gi|307708551|ref|ZP_07645016.1| S1 RNA binding domain protein [Streptococcus mitis NCTC 12261]
 gi|307615467|gb|EFN94675.1| S1 RNA binding domain protein [Streptococcus mitis NCTC 12261]
 gi|307618198|gb|EFN97355.1| 40S ribosomal protein S1 [Streptococcus mitis SK321]
 gi|307621773|gb|EFO00810.1| 40S ribosomal protein S1 [Streptococcus mitis SK597]
          Length = 400

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVKVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
 gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
          Length = 492

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS         +I KG V  +++FGAFV 
Sbjct: 181 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVD 240

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 241 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWR 298



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + ++  G
Sbjct: 258 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRQFARTHAIGQVVPG 312

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD + VK++D D DR +I 
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRIS 372

Query: 685 LSMKVVDQNTG 695
           LS+K  ++ + 
Sbjct: 373 LSLKQANEASA 383



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 50  DIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLQKEDK 109

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 110 EGRLILSKKRAQ 121


>gi|255284500|ref|ZP_05349055.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella
           formatexigens DSM 14469]
 gi|255264957|gb|EET58162.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bryantella
           formatexigens DSM 14469]
          Length = 361

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 14/188 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVE 579
            ++    R  +L    + + ++  +       VE +          + +GG   +  I E
Sbjct: 162 RRRIIGDRKQLLVARKEEMQKALFERIHVGDVVEGVVKNITDFGAFVDLGGADGLLHISE 221

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQV 627
            +  +V+       + D   V +   +  +I  + +       +    K     I  G+V
Sbjct: 222 MSWGRVDNPRKLFNVGDKLKVLLKDINGNKIALSLKFEDENPWLTAAEKYAAGNIVTGRV 281

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E V K SDV+K G  +  K++DF+ +  KI LS
Sbjct: 282 ARMTDFGAFVELEPGVDALLHVSQISHEHVDKPSDVLKVGQQIEAKVVDFNEEEKKISLS 341

Query: 687 MKVVDQNT 694
           MK ++  +
Sbjct: 342 MKALENTS 349



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I +G V+ V +    ++     DG++  ++ + +      DVVK G
Sbjct: 5   QMLEESLKTIHNGEIVEGTVIDVKEDEIVLNIGYKADGIISKNEYTNDAGIDLRDVVKVG 64

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +    G
Sbjct: 65  DTMEAKVLKVNDGDGQVALTYKKLAAEKG 93


>gi|291294665|ref|YP_003506063.1| RNA binding S1 domain-containing protein [Meiothermus ruber DSM
           1279]
 gi|290469624|gb|ADD27043.1| RNA binding S1 domain protein [Meiothermus ruber DSM 1279]
          Length = 125

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 49/83 (59%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   I +G+V ++M+FGAFV F     GLVHISQ++ E V    D + EGD V V +
Sbjct: 1   MELEAGAIVEGRVTRIMEFGAFVEFPNGESGLVHISQVAHEFVKNIRDHLNEGDVVSVLV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L  D++G++ LS+K +     +P
Sbjct: 61  LGRDEKGRLDLSIKELTPAPVEP 83


>gi|126329382|ref|XP_001372178.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 237

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 23/213 (10%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +V V  G  E                 +     
Sbjct: 30  LRHFACEQNLLSRPDGSASFLQGDTSVLVGV-YGPAE---------------VKVSKEIF 73

Query: 382 PCATGEV---SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
             AT EV    ++G P   E    RL R     V+  T     ++ +V +I    GS   
Sbjct: 74  NKATLEVILKPKIGLPGVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQIVSDAGSLLA 133

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
             +  + LAL+DAGVP+     G+   L  DG    ++ D +  ++         A  DS
Sbjct: 134 CCLNAACLALVDAGVPLRALFCGVTCALDLDGG---LVLDPTAKQEKEARAILTFA-LDS 189

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
               + M    G  S       L  A+   LHI
Sbjct: 190 TEQKLLMSTTKGLYSVAEFQQCLAAAQHASLHI 222



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VL  V     +K  ++ F    L V  + +                 P
Sbjct: 44  DGSASFLQGDTSVLVGVYGPAEVKVSKEIFNKATLEVILKPKI--------------GLP 89

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 90  GVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQIVSDAGSLLACCLNAACLALVDAGVP 149

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G      ++G  VL+P   +++
Sbjct: 150 LRALFCGVTCALDLDGGLVLDPTAKQEK 177


>gi|292619478|ref|XP_002663993.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Danio rerio]
          Length = 1210

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKT 660
             + + R   + P V  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  
Sbjct: 240 KDKHVDRPPPEEPSVADIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANV 299

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +DVV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 300 ADVVSKGQRVKVKVLSFTGS-KTSLSMKDVDQDTGEDL 336


>gi|324997170|ref|ZP_08118282.1| 30S ribosomal protein S1 [Pseudonocardia sp. P1]
          Length = 502

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 574 IRGIVEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVV 628
           +R +    G K+       D     +  S  A +E  +  +RS   +  +  ++ KG V 
Sbjct: 161 VRDLQPYVGRKIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQRGQVRKGVVS 220

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+
Sbjct: 221 SVVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSL 279

Query: 688 KVVDQNTGK 696
           K   ++  +
Sbjct: 280 KATQEDPWR 288



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + +I  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRLYARTHAIGQIVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+ GD   VK++D D DR +I 
Sbjct: 303 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGDDAMVKVIDIDLDRRRIS 362

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 363 LSLKQANE 370


>gi|145249326|ref|XP_001401002.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Aspergillus niger CBS 513.88]
 gi|134081680|emb|CAK46614.1| unnamed protein product [Aspergillus niger]
          Length = 1231

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 16/124 (12%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +  ++ + D+DG        +            + D P + K+Y G+V  V DFGAFV+ 
Sbjct: 233 ERKSRRDRDEDGEYFRKPPPVE-----------LDDQPVLYKVYDGRVTGVKDFGAFVNL 281

Query: 640 CGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G +   DGLVH+S +    RV   SD+V  G  V VK++      +I LSMK VDQ TG
Sbjct: 282 LGVKGKVDGLVHVSAMQEGARVNHPSDLVSRGQPVKVKVVSIQGS-RIGLSMKEVDQVTG 340

Query: 696 KPIV 699
             ++
Sbjct: 341 LDLI 344


>gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
           17982]
 gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|153798485|gb|EDN80905.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
           17982]
 gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
          Length = 478

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I  +  AK+   D     +  S  A +E  +  +R+      +  ++  G V  +++FG
Sbjct: 161 YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 221 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 279

Query: 694 TGK 696
             +
Sbjct: 280 PWQ 282



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 242 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQAFARTHAIGQVVPG 296

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VVK G+ V+VK++D D +R +I 
Sbjct: 297 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRIS 356

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 357 LSLKQANE 364



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      DVV  GD +   +L   D 
Sbjct: 34  DIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKEDK 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 94  EGRLLLSKKRAQ 105


>gi|326932842|ref|XP_003212521.1| PREDICTED: nucleolar protein of 40 kDa-like [Meleagris gallopavo]
          Length = 239

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +  +PE+  I++G+V  V ++GAF+   G  + GLVH + +S+ R+ K S++V  GD VW
Sbjct: 1   MEPLPELYAIFQGEVAAVTEYGAFIKIPGCRKQGLVHKTHMSSCRIDKPSEIVDVGDKVW 60

Query: 672 VKLLD---FDDRGKIKLSMKVVDQNTGKPI 698
           VKL+     DD+ K+ LSMKVV+Q TGK +
Sbjct: 61  VKLIGKEIKDDKLKLSLSMKVVNQGTGKDL 90


>gi|295103120|emb|CBL00664.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [Faecalibacterium prausnitzii SL3/3]
          Length = 636

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +ID +          +E          + +   +   +   VV +  FGAFV      DG
Sbjct: 529 DIDTENHKVSLGYKKSEDN----PWEQLKNNYPIGSTFHAPVVSLTKFGAFVRILPGVDG 584

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS++S +RV K SD +K GD V VKLLD D D+ +I LSMK +  N  +
Sbjct: 585 LVHISEISNDRVEKVSDALKVGDMVDVKLLDVDFDKKRISLSMKALLNNDAE 636



 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G+  +             +  A +  +     +       +  +  
Sbjct: 350 DELDLIVEKVMDQDGVIQLSRKKLASRKGMEEIAKAAESGEVVEGDVTEFNKGGVVVNVK 409

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F PR +      +    ++G   +++  + E +G K+       V   +   AE  
Sbjct: 410 GVKVFVPRSQATMRRDEDYTALVGQHVQLV--VTECSGRKI-------VGSINKVTAEQN 460

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+          EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV
Sbjct: 461 KAK--REEFWANVEVGKTYTGVVKSLTSYGAFVDI-GGVDGLCHISELSWNRIKHPSEVV 517

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GDT+ V + D D +  K+ L  K  + N  + +
Sbjct: 518 SVGDTIEVYVKDIDTENHKVSLGYKKSEDNPWEQL 552



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++    +++     +     +  S         I KG V  +      V     + G
Sbjct: 268 SIIEEVLNSMSAEINDNMSFEEMLNASEEKRVHAGSIVKGIVTSISANEIQVDIGAKQTG 327

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV 690
            V +S+L+ +  AK  D+VK GD + + +    D  G I+LS K +
Sbjct: 328 FVKLSELTDDSSAKVEDLVKVGDELDLIVEKVMDQDGVIQLSRKKL 373


>gi|119776640|ref|YP_929380.1| hypothetical protein Sama_3508 [Shewanella amazonensis SB2B]
 gi|119769140|gb|ABM01711.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 778

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +   +     +   I +G V  V +FGAFV     +DG
Sbjct: 619 DILKELDKPGRDPRGEFKTAHFKEGVTEVRDLKPEMILEGVVTNVTNFGAFVDVGVHQDG 678

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           LVHIS LS + V+    VVK GD V VK+++ D +R +I LSM+ +D+  
Sbjct: 679 LVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGLSMR-LDEKP 727


>gi|320157699|ref|YP_004190078.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio
           vulnificus MO6-24/O]
 gi|319933011|gb|ADV87875.1| transcription accessory protein (S1 RNA-binding domain) [Vibrio
           vulnificus MO6-24/O]
          Length = 774

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHNVSDLEVGMILEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVHIS L+   V+   +VVK GD V VK+++ D  R +I LSM++ D+ 
Sbjct: 677 LVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLSDEP 725


>gi|226327578|ref|ZP_03803096.1| hypothetical protein PROPEN_01449 [Proteus penneri ATCC 35198]
 gi|225204104|gb|EEG86458.1| hypothetical protein PROPEN_01449 [Proteus penneri ATCC 35198]
          Length = 779

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 561 DQIRNVIGMGGKVIR-----GIVEQTG-AKV-NIDDDGTVKIASSSLAEIEAAREMIRSI 613
            +I +++G    + +      I EQ G   + +I  +              A        
Sbjct: 584 QKIDDLMGNSALISQVDARAFITEQFGLPTINDILKELAKPGRDPRPEFKTATFAEGVET 643

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +      I +G V  V +FGAFV     +DGLVHIS L+   +     VVK GD V VK
Sbjct: 644 MNDLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLADRFIEDPHTVVKTGDIVKVK 703

Query: 674 LLDFD-DRGKIKLSMKVVDQNTG 695
           +L+ D  R +I L+M+ +D+  G
Sbjct: 704 VLEVDLARKRIALTMR-LDEVAG 725


>gi|153871353|ref|ZP_02000546.1| 30S ribosomal protein S1 [Beggiatoa sp. PS]
 gi|152072182|gb|EDN69455.1| 30S ribosomal protein S1 [Beggiatoa sp. PS]
          Length = 562

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +   +  A    +     I  ++    + +  
Sbjct: 68  DHVEVALEAVEDGYGETKLSREKAKRAAAWAALEHAYDTHETLTGIITEKVKGGFTVNVN 127

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   + N      V ++  ++ E E
Sbjct: 128 DIRAFLPGSL---VDVRPVRDTTYLEGKPLEFKVIKLDKRRN-----NVVVSRRAVVEKE 179

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             +E    +T + E   +  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+VV
Sbjct: 180 NTQEREALLTVMQEG-MVLPGIVKNLTDYGAFVDL-GGVDGLLHITDMAWRRVKHPSEVV 237

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD V VK+L FD +R ++ L +K + ++    I 
Sbjct: 238 NVGDEVEVKVLKFDRERIRVSLGLKQLGEDPWLDIA 273



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+       I  +        +    I           
Sbjct: 224 DMAWRRVKHPSEVVNVGDEVEVKVLKFDRERIRVSLGLKQLGEDPWLDIARRYPEGTRLF 283

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S +V+ GD V V +LD D +R +
Sbjct: 284 GRVTNLADYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKIVQVGDEVEVMVLDIDEERRR 343

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 344 ISLGIKQCHVNPWEE 358



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +I  V    G  +  +V      ++ID++            +              
Sbjct: 318 VHPSKIVQV----GDEVEVMV------LDIDEERRRISLGIKQCHVN----PWEEFATTY 363

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLD 676
             N    G +  + DFG F+   G  DGLVH+S +S     + +    K+ D V   +L 
Sbjct: 364 NKNDKVVGHIKSITDFGIFIELPGNIDGLVHLSDISWNVAGEIAVRNYKKADEVEAVVLA 423

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K +D++ 
Sbjct: 424 VDAERERISLGIKQLDKDP 442



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++   +         I KG V +V +  A +      +G +   +++ ERV      +KE
Sbjct: 440 KDPFSNYVVQYPKGSIVKGVVSEVENTKAVIQLGEGVEGFLRAQEIAYERVDDARRFLKE 499

Query: 667 GDTVWVKLLDFDDRGK-IKLSMK 688
            + +  K++  D + + I LS+K
Sbjct: 500 TEEIEAKVIGVDRKKRMINLSIK 522


>gi|322372522|ref|ZP_08047058.1| ribosomal protein S1 [Streptococcus sp. C150]
 gi|321277564|gb|EFX54633.1| ribosomal protein S1 [Streptococcus sp. C150]
          Length = 417

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 285 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 344

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ + D  ++ LS+K +++   
Sbjct: 345 DVTVKVLEVNADAERVSLSIKALEERPA 372



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+  +D      I S        A E  + +    EV  I  G+V ++  F
Sbjct: 165 QFVGQEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSF 224

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD V VK+L  D+  G++ LS+K    
Sbjct: 225 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEVDVKVLAIDEEAGRVSLSLKATTP 283

Query: 693 NTG 695
              
Sbjct: 284 GPW 286



 Score = 37.2 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           E + +         +   +V+ V +  A V   G   +G++   +L+ +R A  +D+VK 
Sbjct: 22  EELLNSVSEVNTGDVVTAEVISVDNDQANVVIEGTGIEGVLTRRELTNDRDANVADLVKV 81

Query: 667 GDTVWVKLL 675
           G+T+ V +L
Sbjct: 82  GETLEVLVL 90


>gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886]
 gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886]
          Length = 775

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G +  V +FGAFV     +DGLVHIS LS + ++   DVVK GD V VK+++ D  
Sbjct: 652 MVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPRDVVKAGDVVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQN--TGKPI 698
           R +I LSM++ D+     KP+
Sbjct: 712 RKRIGLSMRLSDEPGTDSKPV 732


>gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
           DSM 43183]
 gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 487

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  + E+ ++  +  +  ++ KG V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWQQFARTHQIGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D ++VK++D D DR +I LS+K  ++  
Sbjct: 345 DEIFVKIIDIDLDRRRISLSLKQANETA 372



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             E  AA +      +      I +G VVKV      +      +G++   +LS +    
Sbjct: 22  AEEFLAAIDETIKYFND---GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVD 78

Query: 660 TSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             +VVK GD V   +L   D  G++ LS K   
Sbjct: 79  PHEVVKVGDHVEALVLQKEDKEGRLILSKKRAQ 111


>gi|261341906|ref|ZP_05969764.1| protein YhgF [Enterobacter cancerogenus ATCC 35316]
 gi|288315809|gb|EFC54747.1| protein YhgF [Enterobacter cancerogenus ATCC 35316]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973596|gb|EED91926.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 172

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTH------------GSSLFIRGDTQAIVVVTLGTRE 358
            +R DGR    +R +S  +G L  T             GS+L   G TQ + VV  G  +
Sbjct: 7   HLRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVV-RGPSD 65

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP--SRREIGHGRLARRAIHPVLPQT 416
             +  + L      +  M  +  P +     R+  P   RR I    L + A+   +   
Sbjct: 66  AGRRTEELPDRATLEVTMRTS--PFSPPGDRRVTNPTSDRRLIEQSHLLQTALSASILLH 123

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
                 + +   +   DG    A +  ++LAL+DAG+P+   V   + G
Sbjct: 124 LYPKSKISVTVMVLADDGGRLEAAINAATLALIDAGIPLKDMVCACSAG 172



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLR-RESRPTE 86
            G+ L + G T VL  V          +  P     +         P G  R        
Sbjct: 44  SGSALVSMGLTQVLCVVRGPSDAGRRTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDR 103

Query: 87  NEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
             I  S ++  ++    L     K++  V + V+  D        ++ AA+ AL+ +G+P
Sbjct: 104 RLIEQSHLLQTALSASILLHLYPKSKISVTVMVLADDGGRL--EAAINAATLALIDAGIP 161

Query: 145 FEGPVVGAQVD 155
            +  V      
Sbjct: 162 LKDMVCACSAG 172


>gi|229814996|ref|ZP_04445334.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
           13280]
 gi|229809483|gb|EEP45247.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
           13280]
          Length = 386

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +   +++++    G  I   V +     N      V      L E   A      I    
Sbjct: 151 VDLRRVKDLTSYLGTRIEARVIEMDRNRN----NVVLSRRVVLEESRKA--ERSEILSKL 204

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     KG V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD 
Sbjct: 205 KSGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDV 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R +I L +K   ++  + +V
Sbjct: 264 DLNRERISLGLKQTTEDPWRALV 286



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R++     V  I +G V K++ FGAFV      +GLVHIS+++ + V + + V   G
Sbjct: 280 DPWRALVKKYPVGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQVTAVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             V VK+++ D DR +I LSMK   +  G  I
Sbjct: 340 SKVQVKVMEIDLDRRRISLSMKSAAETLGIEI 371



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      V      +G++ + +LS  + A  +D+V  GD++   +L   D 
Sbjct: 35  DLVNGTVVKIERDEVLVDIGFKSEGVIPVRELSIRKDANPADLVALGDSIEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K  +
Sbjct: 95  DGRLVLSKKRAE 106


>gi|329116949|ref|ZP_08245666.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020]
 gi|326907354|gb|EGE54268.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020]
          Length = 407

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S  RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVEGKVKRLTDFGAFVEVLAGIDGLVHISQISHNRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIE-AAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    IE AA+E  + +        +  G V ++  F
Sbjct: 148 KFVGQEFEAKIKEVDAAENRFILSRREVIEEAAKEARQEVFSKLSEGSVVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
          Length = 410

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    G+ +   +      + I+      I S          E  + I    
Sbjct: 145 ITDHYVEDLNQFKGEELEFKI------IEIEPSENRLILSHKEIVQAQHEEAAKKIFSEL 198

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               + +G+V ++ +FGAF+   G  DGLVH+S++S + V K +DV++ G  V VK+L+ 
Sbjct: 199 VAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNV 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +R +I LS+K         I
Sbjct: 258 DPERERISLSIKQTLPGPWDDI 279



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV++ G 
Sbjct: 275 PWDDIEEKAAVGTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQ 334

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ D +R ++ LS+K +++   
Sbjct: 335 EVKVKVLNVDPERQRLGLSIKALEEAPA 362



 Score = 38.7 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF-GAFVHFCG-ARDGLVHISQLSTERV 657
             E   A            V  + KG+V+++ D   A V       +G+V  +QLST+ V
Sbjct: 3   ENENNNAMLEALDSIKTVNVGDVVKGRVLQIDDDRQAIVGIEDSGVEGVVPANQLSTKPV 62

Query: 658 AKTSDVVKEGDTVWVKLLDF----DDRGKIKLSMKVVD 691
              +DVVK GD + + ++       + G   LS + ++
Sbjct: 63  DNINDVVKVGDELDLVVISKIGSDKENGSYLLSHRRLE 100


>gi|288933208|ref|YP_003437267.1| Tex-like protein protein-like protein [Klebsiella variicola At-22]
 gi|288887937|gb|ADC56255.1| Tex-like protein protein-like protein [Klebsiella variicola At-22]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|156537299|ref|XP_001606070.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Nasonia vitripennis]
          Length = 284

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 117/275 (42%), Gaps = 11/275 (4%)

Query: 293 SVFEDIQAKVVRTVMLDK-KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           S++ D+ AK  ++ + ++ K R+D R  + +R +  ++G++ +  GS+    G T+ I  
Sbjct: 18  SIYVDLNAKPAKSSIKNELKTRVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICS 77

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE-IGHGRLARRAIH 410
                RE     +  S + + +    + F   AT    R G     E   +  + +RA+ 
Sbjct: 78  A-FDPRE---IPNKTSYSTQGEIFCEFKFASFAT--CKRKGHQQDTEEKEYSLIMQRALE 131

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           P + +     + + + + + ++ GS+  A + G+SLAL +A VP+   V  +  G+    
Sbjct: 132 PAVCRHEFPNFQVDVYALVLDNGGSALGAAIMGASLALANASVPMFGIVTAVTAGIYD-- 189

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
            D ++L     +E     +  +   T+ GI    M ++   ISE  +V ++         
Sbjct: 190 -DLLLLDPTDKEEALCLSVAKQKKLTNHGIIMQAMLLQHDQISEFFLVGSMDVDCVNNSM 248

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
            L   +       LQ       ++++    ++  +
Sbjct: 249 ELLSKTCSDVHPILQQSLTKLVMKMLKREKEEEGD 283



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 16/167 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R + ++ G ++ Q+ G+     G+T V+ +    R + +   +     +   ++  ++A 
Sbjct: 49  RKMFIKLGVVS-QAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFCEFKFASFAT 107

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET---QVIINVMQHDLESSPH 127
            K      R+  +    E   S ++ R++ P      ++E    QV +  +  D   S  
Sbjct: 108 CK------RKGHQQDTEEKEYSLIMQRALEPAV---CRHEFPNFQVDVYALVLDNGGSAL 158

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL 174
             +++ AS AL  + +P  G V        +   +L+P   E+   L
Sbjct: 159 GAAIMGASLALANASVPMFGIVTAVTAGIYDDLLLLDPTDKEEALCL 205


>gi|145298754|ref|YP_001141595.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851526|gb|ABO89847.1| ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 556

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 25/263 (9%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMK 508
            G  +   V  I  G V         S I  +E  + LG ++  V  T      + +D  
Sbjct: 20  QGSIVKGTVVAIENGFVLVDAGLKSESAIPAEEFKNALGELEISVGDTVD----VALDSI 75

Query: 509 IGGISENIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMA 557
             G  E  +             L++A   +  ++  ++ KV     ++L      +    
Sbjct: 76  EDGFGETKLSREKAKRHEAWLQLEKAYEEQATVIGIINGKVKGGFTVELNGIRAFLPGSL 135

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    IR+   +  K +   V +   K N      V ++  ++ E E   E    + ++ 
Sbjct: 136 VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIETENTSERESLLANLQ 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F
Sbjct: 191 EGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKVLKF 248

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R ++ L +K + ++    I 
Sbjct: 249 DRERTRVSLGLKQLGEDPWVAIA 271



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V +V   GA +      +G +  S  + +RV   + V+  GD V  K +  D + 
Sbjct: 453 IVKGKVTEVDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + + LS++  D+   +
Sbjct: 513 RTVSLSVRAKDEADER 528



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE-- 666
             +   +         G++  + DFG F+   G  DGLVH+S +S     +  + V+E  
Sbjct: 353 PWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWN--NQGEEAVREFK 410

Query: 667 -GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            GD +   +L  D +R +I L +K ++++ 
Sbjct: 411 KGDEIEAVVLQVDPERERISLGVKQIEEDP 440



 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTS-DVVK 665
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S  V  
Sbjct: 265 DPWVAIAKRYPETTRLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                 + L   ++R +I L +K    N  +
Sbjct: 325 GDVVDVMVLDIDEERRRISLGLKQCKSNPWQ 355


>gi|290512012|ref|ZP_06551380.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella
           sp. 1_1_55]
 gi|289775802|gb|EFD83802.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella
           sp. 1_1_55]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
 gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
          Length = 483

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 112/286 (39%), Gaps = 39/286 (13%)

Query: 449 MDAGVPISKPVAGIAMGLVKD-----GDDFIILSDISGDEDHLGHMD-----FKVAGTDS 498
           M    P   PVA   +G  ++      +      D    E  +  +D       +     
Sbjct: 1   MTTTTPSPAPVAVNDIGSTEEILAAVDETMKYFDDGDIVEGTVVKVDRDEVLLDIGYKTE 60

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL-SESRLQLGEFTPRVEIMA 557
           G+   +       +  + +V    + +   L   ++  ++L S+ R Q       +E + 
Sbjct: 61  GVILARELSIKHDVDPDEIVSVGDEIEALVLQKEDKEGRLLLSKKRAQYERAWGTIERVK 120

Query: 558 ------------IPPDQIRNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGT 592
                       +    +   IG+ G +   +VE             +  AK+   D   
Sbjct: 121 EEDGVVTGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180

Query: 593 VKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
             +  S  A +E  +  +R+      +  ++  G V  +++FGAFV   G  DGLVH+S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVRTGVVSSIVNFGAFVDL-GGVDGLVHVSE 239

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 240 LSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQ 285



 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 245 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQAFARTHAIGQVVPG 299

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VVK G+ V+VK++D D +R +I 
Sbjct: 300 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRIS 359

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 360 LSLKQANE 367


>gi|206576501|ref|YP_002236221.1| S1 RNA binding domain protein [Klebsiella pneumoniae 342]
 gi|206565559|gb|ACI07335.1| S1 RNA binding domain protein [Klebsiella pneumoniae 342]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118]
 gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118]
          Length = 399

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFV 637
           ++   K+   +    ++  S    ++A RE  R           + +G+V ++ +FGAF+
Sbjct: 159 QELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFI 218

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S++S ERV K +D +K G  V VK+L  D ++G+I LS+K       +
Sbjct: 219 DL-GGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWE 277

Query: 697 PI 698
            +
Sbjct: 278 QV 279



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 14/250 (5%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH--MDFKVAGTDSGITAMQMDMKIGGI 512
           I  PV  +  G +            S   DH       FK    +  I  ++       +
Sbjct: 118 IKAPVTQVVKGGLVVDAGVRGFVPASMVSDHFVEDLNQFKGQELELKIVEIEPSDNRLIL 177

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVI 567
           S   +V A ++AKR  +        V+     +L  F   +++  +       +     +
Sbjct: 178 SRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGVDGLVHVSEISYERV 237

Query: 568 GMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
                 ++   E     +++D + G + ++           E    + +      + +G 
Sbjct: 238 NKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLP-----EPWEQVPEQVAEGDVLEGT 292

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G+ V VK+L  D    ++ L
Sbjct: 293 VKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLAL 352

Query: 686 SMKVVDQNTG 695
           S+K + +   
Sbjct: 353 SIKALQEKPA 362


>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
 gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
          Length = 410

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + I+      I S          E  + I    +   + +G+V ++ +FGAF+
Sbjct: 160 QELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAFI 219

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S++S + V K SDV++ G  V VK+L+ D +R +I LS+K        
Sbjct: 220 DL-GGVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPWD 278

Query: 697 PI 698
            I
Sbjct: 279 DI 280



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +      +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G 
Sbjct: 276 PWDDIEEKAPEGSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQ 335

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V VK+L+ D +  ++ LSMK +++  
Sbjct: 336 EVKVKVLNVDPEHQRLGLSMKALEERP 362


>gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
 gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
          Length = 410

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    G+ +   +      + I+      I S          E  + I    
Sbjct: 145 ITDHYVEDLNQFKGEELEFKI------IEIEPSENRLILSHKEIVQAQHEEAAKKIFSEL 198

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               + +G+V ++ +FGAF+   G  DGLVH+S++S + V K +DV++ G  V VK+L+ 
Sbjct: 199 AAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNV 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +R +I LS+K         I
Sbjct: 258 DPERERISLSIKQTLPGPWDDI 279



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV++ G 
Sbjct: 275 PWDDIEEKAAVGTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQ 334

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ D +R ++ LS+K +++   
Sbjct: 335 EVKVKVLNVDPERQRLGLSIKALEEAPA 362



 Score = 38.7 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF-GAFVHFCG-ARDGLVHISQLSTERV 657
             E   A            V  + KG+V+++ D   A V       +G+V  +QLST+ V
Sbjct: 3   ENENNNAMLEALDSIKTVNVGDVVKGRVLQIDDDRQAIVGIEDSGVEGVVPANQLSTKPV 62

Query: 658 AKTSDVVKEGDTVWVKLLDF----DDRGKIKLSMKVVD 691
              +DVVK GD + + ++       + G   LS + ++
Sbjct: 63  DNINDVVKVGDELDLVVISKIGSDKENGSYLLSHRRLE 100


>gi|298528791|ref|ZP_07016195.1| RNA binding S1 domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512443|gb|EFI36345.1| RNA binding S1 domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 476

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +   D G V+I  S     +A  +   SIT+  E   + +G V +V  FGAFV      +
Sbjct: 254 IEEKDKGQVRIGLSMK---QAQADPWESITENFEPGSVVEGVVTRVAPFGAFVEISPGLE 310

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           GLVH+S++S  +RV+K  + V+ G  V VK+   D    +I LSM+    +  +
Sbjct: 311 GLVHVSEMSYLKRVSKPEEEVQPGQKVRVKVKGIDSLERRISLSMRDAQGDPWE 364



 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 19/251 (7%)

Query: 456 SKPV---AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
              V    G     V D +D +        E+      F V+     I         GG+
Sbjct: 40  KDHVYVDTGTKTDGVADREDLLDSEGNLALEEGDSVELFVVSRHQGEIRLASSFGAHGGV 99

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRL-QLGEFTPRVEIMAIPPDQIRNVIGMGG 571
               ++ A++Q    +  +            +     F P  ++     +  ++++G   
Sbjct: 100 --QQLMQAMEQEIPVQGKVKETCKGGFRVQVMGNHLAFCPMSQMDNRMVEDSQSLVGESM 157

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
             +   VE  G  +         + S    + +   E +   +   +   + +G V +V 
Sbjct: 158 TFLVSRVEANGRNI---------VVSRRALKDKEQAESLHEFSRNYKPGDVLQGTVTRVE 208

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG----KIKLSM 687
            +G FV      +GLVHIS++S  R     ++V  GDTV V LL  +++     +I LSM
Sbjct: 209 PYGVFVEVAPGLEGLVHISEMSWSRSLAPEEIVSVGDTVSVHLLGIEEKDKGQVRIGLSM 268

Query: 688 KVVDQNTGKPI 698
           K    +  + I
Sbjct: 269 KQAQADPWESI 279



 Score = 44.1 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +A  +    ++   E   + +G++ K  DFG  V       GLV  S L   + +  +
Sbjct: 355 MRDAQGDPWEGVSTRYEKGTLVEGKMEKQEDFGMLVALEPGVVGLVPRSILHQNQDSSLT 414

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKL 685
           +  K GD V V +   D+   +I L
Sbjct: 415 NK-KPGDRVNVAVESVDEANRRISL 438


>gi|255954649|ref|XP_002568077.1| Pc21g10420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589788|emb|CAP95939.1| Pc21g10420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1231

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           P + KIY G V  V DFGAFV+  G R   DGLVH+S +    RV   SD+V  G  V V
Sbjct: 259 PVLFKIYDGTVTGVKDFGAFVNLKGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQPVKV 318

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K+   D   +I LSMK VDQ TG  +V
Sbjct: 319 KVASIDGT-RIGLSMKEVDQVTGMDLV 344


>gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
 gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
 gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
          Length = 397

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFV 637
           ++   K+   +    ++  S    ++A RE  R           + +G+V ++ +FGAF+
Sbjct: 157 QELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFI 216

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S++S ERV K +D +K G  V VK+L  D ++G+I LS+K       +
Sbjct: 217 DL-GGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWE 275

Query: 697 PI 698
            +
Sbjct: 276 QV 277



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 14/250 (5%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH--MDFKVAGTDSGITAMQMDMKIGGI 512
           I  PV  +  G +            S   DH       FK    +  I  ++       +
Sbjct: 116 IKAPVTQVVKGGLVVDAGVRGFVPASMVSDHFVEDLNQFKGQELELKIVEIEPSDNRLIL 175

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVI 567
           S   +V A ++AKR  +        V+     +L  F   +++  +       +     +
Sbjct: 176 SRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGVDGLVHVSEISYERV 235

Query: 568 GMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
                 ++   E     +++D + G + ++           E    + +      + +G 
Sbjct: 236 NKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLP-----EPWEQVPEQVAEGDVLEGT 290

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G+ V VK+L  D    ++ L
Sbjct: 291 VKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLAL 350

Query: 686 SMKVVDQNTG 695
           S+K + +   
Sbjct: 351 SIKALQEKPA 360


>gi|330012471|ref|ZP_08307385.1| Tex-like protein [Klebsiella sp. MS 92-3]
 gi|328533822|gb|EGF60501.1| Tex-like protein [Klebsiella sp. MS 92-3]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|238896874|ref|YP_002921619.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae NTUH-K2044]
 gi|238549201|dbj|BAH65552.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|152972285|ref|YP_001337431.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262045243|ref|ZP_06018269.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|150957134|gb|ABR79164.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259037453|gb|EEW38698.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 776

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 652 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVMEVDLP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|227355092|ref|ZP_03839503.1| transcription accessory protein [Proteus mirabilis ATCC 29906]
 gi|227164879|gb|EEI49726.1| transcription accessory protein [Proteus mirabilis ATCC 29906]
          Length = 777

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 4/161 (2%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKV-NIDDDG 591
           + S V  E+   +      +    I      + +         + EQ G   + +I  + 
Sbjct: 563 DASTVHPEAYPIVENILQSIHQ-KIDQVMGNSALLSQINAREFVTEQFGLPTINDILKEL 621

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                        A         +      I +G V  V +FGAFV     +DGLVHIS 
Sbjct: 622 AKPGRDPRPEFKTATFAEGVETMNDLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISS 681

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           LS + V     VVK GD V VK+L+ D  R +I L+M++ +
Sbjct: 682 LSDKFVEDPHTVVKTGDIVKVKVLEVDLPRKRIALTMRLDE 722


>gi|118102879|ref|XP_418105.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           [Gallus gallus]
          Length = 1076

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 224 KHVDRPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 283

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 284 VVSKGQRVKVKVLSFTGS-KTSLSMKDVDQDTGEDL 318


>gi|70727502|ref|YP_254418.1| hypothetical protein SH2503 [Staphylococcus haemolyticus JCSC1435]
 gi|68448228|dbj|BAE05812.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 133

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       +P
Sbjct: 64  ADDGKISLSIKKAKDRPRRP 83


>gi|289644109|ref|ZP_06476204.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506078|gb|EFD27082.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 484

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS         +I KG V  +++FGAFV 
Sbjct: 172 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVD 231

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++  +
Sbjct: 232 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLERERVSLSLKATQEDPWR 289



 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 286 DPWRQFARTHAIGQVVPGRVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVG 345

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D + VK++D D DR +I LS+K  + ++ 
Sbjct: 346 DEILVKVIDIDLDRRRISLSLKQANDSSA 374



 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +      +VV  GD V   +L   D 
Sbjct: 41  DIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDK 100

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 101 EGRLILSKKRAQ 112


>gi|258621309|ref|ZP_05716343.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
 gi|258625367|ref|ZP_05720264.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
 gi|262171091|ref|ZP_06038769.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
 gi|258582358|gb|EEW07210.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
 gi|258586697|gb|EEW11412.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
 gi|261892167|gb|EEY38153.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
          Length = 556

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSVERDELLETLQEGTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 531



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440


>gi|254787791|ref|YP_003075220.1| transcriptional accessory protein [Teredinibacter turnerae T7901]
 gi|237685533|gb|ACR12797.1| putative transcriptional accessory protein [Teredinibacter turnerae
           T7901]
          Length = 773

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         E   I +G V  V +FGAFV     +DG
Sbjct: 618 DILQELDKPGRDPRPEFKTAQFQEGVEKVSDLEPGMILEGTVTNVTNFGAFVDVGVHQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS   V    +VVK GD V  K+++ D DR +I LS++ +D   G+
Sbjct: 678 LVHISALSNTFVKDPREVVKAGDIVKAKVMEVDVDRKRIALSLR-LDDTPGE 728


>gi|291287721|ref|YP_003504537.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884881|gb|ADD68581.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 706

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 11/132 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               +   +G+G   I+ I++    K + D    V             ++ I SI  + E
Sbjct: 585 NVKSLAEKLGIGEFTIKDIIDNL-EKPDRDIRDNVDPVVF--------KQGILSIESLKE 635

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +  G+V  V+DFGAFV      DGLVHISQL+   V+  S+VVK G TV  K+L  D
Sbjct: 636 G-DVLTGKVSNVVDFGAFVDVGLKNDGLVHISQLADRFVSDPSEVVKVGQTVKTKVLSVD 694

Query: 679 -DRGKIKLSMKV 689
            +RG++ LSMKV
Sbjct: 695 RERGRLSLSMKV 706


>gi|27364308|ref|NP_759836.1| transcription accessory protein [Vibrio vulnificus CMCP6]
 gi|27360426|gb|AAO09363.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Vibrio
           vulnificus CMCP6]
          Length = 774

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHNVSDLEVGMILEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVHIS L+   V+   +VVK GD V VK+++ D  R +I LSM++ D+ 
Sbjct: 677 LVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLSDEP 725


>gi|328951770|ref|YP_004369104.1| ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109]
 gi|328452094|gb|AEB07923.1| ribosomal protein S1 [Desulfobacca acetoxidans DSM 11109]
          Length = 615

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 13/184 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A Q+       I  ++   LS     +  F P  ++   P   I ++IG     
Sbjct: 144 WEEISSAYQEDGEIEGTITAKVKGGLSVDLGGMSAFLPGSQVDLQPVRNIDSLIGQT--- 200

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMD 632
                     K+   +     +  S    +E  R   +S T  + E  K+  G V  + D
Sbjct: 201 -------FKFKILKYNKKRRNVVLSRRIIMEKERAEQKSATLAMLEGGKVVNGVVKNITD 253

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +G FV   G  DGL+H++ +S  R+   S+V   GD + VK+L+FD +  K+ L MK + 
Sbjct: 254 YGVFVDL-GGIDGLLHVTDMSWGRIGHPSEVFHVGDPIEVKILNFDRENEKVSLGMKQLT 312

Query: 692 QNTG 695
           ++  
Sbjct: 313 EDPW 316



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +  IVE     ++       K   S   +              PE   I +G++  + DF
Sbjct: 373 VNDIVESEVLDIDPQ-----KKRISLSMKHVEPNPWDIIGEKYPEG-TIIEGKIKNITDF 426

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G F+      DGLVHIS +S   R+   S++ K+G  V  K+L  D +  +  L +K + 
Sbjct: 427 GIFIGIDEGIDGLVHISDISWTRRIKHPSEIFKKGQEVRAKVLKIDKENERFSLGIKQLA 486

Query: 692 QNTGKPI 698
           ++  K I
Sbjct: 487 EDPWKTI 493



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +     T+   +     G+VV + D+GAFV      +GL+H+S++S  ++V   S +V  
Sbjct: 314 DPWLMATEKYPIGARVWGKVVSLTDYGAFVELEPGVEGLIHVSEMSWTKKVRHPSKIVSV 373

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            D V  ++LD D  + +I LSMK V+ N    I
Sbjct: 374 NDIVESEVLDIDPQKKRISLSMKHVEPNPWDII 406



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +  ++I     V K   G V    DFG F+      +GL+H+S+LS ++       V+
Sbjct: 486 AEDPWKTIDQRYPVGKSVSGLVTNKTDFGVFIELEEGIEGLIHVSELSRDKNKAAQ--VE 543

Query: 666 EGDTVWVKLLDFDDR-GKIKLSMKVVD 691
            GD V  K+++   +  KI LS++ ++
Sbjct: 544 VGDMVTAKVINVSPKDRKIGLSIRKLE 570


>gi|256752354|ref|ZP_05493215.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748765|gb|EEU61808.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 140

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  G+I LS+K V     K 
Sbjct: 64  DANGRISLSIKKVLPKNNKE 83


>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
 gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
 gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
          Length = 303

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 21/230 (9%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +K+ R DGR  E +R +  Q   L    GS+    G T+ +     G R + ++    + 
Sbjct: 43  NKRERHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTK-LNCAVYGPRPNMKH----AS 97

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH-GRLARRAIHPVLPQTAQFPYTLRIVS 427
             R    + + F P AT   +   A S R+  H   L  +A++ V+        T+ +  
Sbjct: 98  QDRGSINLEFRFAPFAT---TGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSV 154

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-----DDFIILSDISGD 482
            + E DG    A +    LAL DAG+ +   V G +  +   G         +L D   +
Sbjct: 155 LVLEDDGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAE 214

Query: 483 E------DHLGHMDFKVAGTDSGITAMQMDMK-IGGISENIMVMALQQAK 525
           E       +   +D       + +  +      +   S   M+   + A 
Sbjct: 215 ERRAFADKNCTFVDLGYCPALASVCFIHASGTLLATESGEQMLRLCEAAC 264


>gi|301299466|ref|ZP_07205741.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852929|gb|EFK80538.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 397

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFV 637
           ++   K+   +    ++  S    ++A RE  R           + +G+V ++ +FGAF+
Sbjct: 157 QELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFI 216

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           +  G  DGLVH+S++S ERV K +D +K G  V VK+L  D ++G+I LS+K       +
Sbjct: 217 NLGGF-DGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWE 275

Query: 697 PI 698
            +
Sbjct: 276 QV 277



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 14/250 (5%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH--MDFKVAGTDSGITAMQMDMKIGGI 512
           I  PV  +  G +            S   DH       FK    +  I  ++       +
Sbjct: 116 IKAPVTQVVKGGLVVDAGVRGFVPASMVSDHFVEDLNQFKGQELELKIVEIEPSDNRLIL 175

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVI 567
           S   +V A ++AKR  +        V+     +L  F   + +          +     +
Sbjct: 176 SRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFINLGGFDGLVHVSEISYERV 235

Query: 568 GMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
                 ++   E     +++D + G + ++           E    + +      + +G 
Sbjct: 236 NKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLP-----EPWEQVPEQVAEGDVLEGT 290

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G+ V VK+L  D    ++ L
Sbjct: 291 VKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLAL 350

Query: 686 SMKVVDQNTG 695
           S+K + +   
Sbjct: 351 SIKALQEKPA 360


>gi|209693812|ref|YP_002261740.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238]
 gi|208007763|emb|CAQ77882.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238]
          Length = 778

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQIRN-VIGM 569
           I+   +     +A       L  M+     ++     E  P V+ +A    +  + +IG 
Sbjct: 531 ITLKKVARLGPKAFEQCAGFLRVMNGKNPLDASAVHPEAYPVVKTIAEKNGKAIDAIIGN 590

Query: 570 GGKVI-----RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
              +        I    G     +I  +              A      +     E+  I
Sbjct: 591 TEFLRSVSANDYISADFGLPTVTDIISELDKPGRDPRPEFKTATFADGVNTVSDLELGMI 650

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVHIS LS   V+   +VVK GD V VK+++ D  R 
Sbjct: 651 LEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDAQRK 710

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L+M++ DQ  G+ 
Sbjct: 711 RIALTMRLNDQ-PGED 725


>gi|158321498|ref|YP_001514005.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158141697|gb|ABW20009.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 718

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 13/131 (9%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNK 621
           +   +G+G   ++ IV++             K       E+     +      +  +++ 
Sbjct: 599 VAEELGIGELTLQDIVQELK-----------KPGRDPREEMPKPLFKSDVLKMEDLKLDM 647

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  V+DFGAFV     +DGLVH+S+LS   V    DVV  GD V VK++  D +R
Sbjct: 648 IMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVKNAMDVVSVGDEVKVKIIGLDIER 707

Query: 681 GKIKLSMKVVD 691
           GKI LS+K V 
Sbjct: 708 GKISLSIKQVQ 718


>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
 gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 21/206 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R +S    +L R HGS+ + +GDT+       G +         +GT++N
Sbjct: 5   RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKV-SAAVYGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +             +  ++G   R    +  + +R +  +   T     T  I+ +    
Sbjct: 55  ENPEKACVEVIWKPKTGQIGKLER---EYEMILKRTLQSICILTLNPNTTTSIIVQFVND 111

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH---- 488
           DG+  +  +  +  AL+DA +P+      I   L   G  ++IL     +E  +      
Sbjct: 112 DGALLVCAINAACAALVDARIPMKHLAVAICCCLADVG--YVILDPTKLEEQKMKGFAYL 169

Query: 489 --MDFKVAGTDSGITAMQMDMKIGGI 512
              +  ++    G + ++ +    GI
Sbjct: 170 VFPNSVLSVLLEGSSLVEGESTEHGI 195



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 24/223 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAV 70
           RPL      + R + G+   + G+T V A V   +      +  +   + V ++ +T  +
Sbjct: 15  RPLSCSHNVLHR-AHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKACVEVIWKPKTGQI 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           GK+            E E  +  ++ R+++ +        T   I V   + + +  V +
Sbjct: 74  GKL------------EREYEM--ILKRTLQSICILTLNPNTTTSIIVQFVNDDGALLVCA 119

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQGSLDLFVSGTQDAVLMVE 189
           + AA AAL+ + +P +   V       + G  +L+P   E+Q           ++VL V 
Sbjct: 120 INAACAALVDARIPMKHLAVAICCCLADVGYVILDPTKLEEQKMKGFAYLVFPNSVLSVL 179

Query: 190 LEA-----NQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           LE       + +E  ++ ++  G    +  ++ + +     AK
Sbjct: 180 LEGSSLVEGESTEHGIITSVTHGVMPVEEYLKCVERGRAASAK 222


>gi|171779310|ref|ZP_02920274.1| hypothetical protein STRINF_01153 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281927|gb|EDT47358.1| hypothetical protein STRINF_01153 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 398

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAARDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVNVKVLEVNAAAERVSLSIKALEERPAQ 356



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  FTP   I           +G      +    +    V  ++   +        +  A
Sbjct: 129 LRGFTPASMIDTRFVRNTEKFVG------QEFEAKIKEVVPAENRFILSRREVIEEKAAA 182

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AR+ + S     E   I KG+V ++  FGAF+   G  DGLVH+++LS ER      VV 
Sbjct: 183 ARKEVFS---KLEEGAIVKGKVARLTSFGAFIDL-GGVDGLVHVTELSHERNVSPKSVVS 238

Query: 666 EGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
            G+ V VK+L  D+  G++ LS+K       
Sbjct: 239 VGEEVEVKVLSIDEEAGRVSLSLKATTPGPW 269


>gi|149377379|ref|ZP_01895123.1| ribosomal protein S1 [Marinobacter algicola DG893]
 gi|149358303|gb|EDM46781.1| ribosomal protein S1 [Marinobacter algicola DG893]
          Length = 564

 Score = 95.0 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +  ++  + +  +  +  I  ++    +     +
Sbjct: 68  VDVALDAVEDGFGETRLSREKAKRAEAWKVLEKSFEAEEVVKGVINGKVKGGFTVDLAGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   +  K +   V +   K N      V ++  ++ E E +
Sbjct: 128 RAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVLEAENS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E  +I KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  
Sbjct: 180 AEREALLETLTEGLEI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 238 GDEINVKVLKFDRERNRVSLGLKQLGEDPWVDI 270



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+       ++ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVLEAENSAEREALLETLTEGLEIKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +    I        
Sbjct: 219 HITDMAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSLGLKQLGEDPWVDIKGRYPEGT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +
Sbjct: 279 KVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVGVMILDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGIKQCVANPWED 356



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G +I          ++ID++                       +   
Sbjct: 316 IHPSKVVQVGDEVGVMI----------LDIDEERRRISLGIKQCVAN----PWEDFSSKF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S          +  K+GD V   +L
Sbjct: 362 NKGDRISGKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREY-KKGDEVETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 SVDPERERISLGIKQLESDP 440



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       + +   I KG V  V    A +      + ++  S++S +RV    + + EG
Sbjct: 439 DPFAEFVQLNDKGSIVKGTVSAVDAKAATITLNDEVEAVLKASEISRDRVEDARNALNEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V  K++  D + + I LS+K  D
Sbjct: 499 DEVEAKIISIDRKNRVINLSVKSKD 523


>gi|257094467|ref|YP_003168108.1| 30S ribosomal protein S1 [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046991|gb|ACV36179.1| ribosomal protein S1 [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 566

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      + N +  AL         I  ++   L+    
Sbjct: 72  DFVQVAIEQLENGFGETRLSRDRAKRVAAWNALEQALNDGSLVVGTITGKVKGGLTVMTN 131

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK     V +   K N      V ++  ++ E  
Sbjct: 132 SVRAFLPGSLVDMRP---VKDTTPYEGKTYEFKVIKLDRKRN-----NVVVSRRAVLEAS 183

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    +  + E + I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 184 VGEERDALLAALKEGS-IVKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVL 241

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GD V  K+L FD ++ ++ L +K + ++  
Sbjct: 242 AVGDEVQAKILKFDQEKNRVSLGLKQLGEDPW 273



 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +L+ D DR +
Sbjct: 288 GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEDRRR 347

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 348 ISLGMKQCAANPWDD 362



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID+D               A       +   
Sbjct: 322 VHPSK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC----AANPWDDFSMNY 367

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +     +G +  + DFG F+   G  DGLVH+S LS      +     K+GD V   +L 
Sbjct: 368 KKGDRVRGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSLPGEEAIRNFKKGDEVDAVVLA 427

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D D+ +I L +K +D + 
Sbjct: 428 IDTDKERISLGIKQLDGDP 446



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S     + N I +G V  V   GA V   G  +  +  S++S +R+   + V KEG
Sbjct: 445 DPYTSYIATHDKNSIVRGLVKSVDARGAVVMLDGDIEAYLRASEVSRDRIDDLTRVYKEG 504

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D +   +++ D + + I LS+K  +Q
Sbjct: 505 DQIEAMIINIDRKTRSISLSIKAREQ 530


>gi|229543987|ref|ZP_04433046.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229325126|gb|EEN90802.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 378

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D+D    I S      +   E  + I D  E  ++ +G V ++  FGAFV   G  D
Sbjct: 153 VELDEDKNRLILSHRAVVEKEKEEKRQDILDHLEAGQVLEGTVQRLTSFGAFVDI-GGID 211

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVHISQL+ ERV   SDVV+EG+ V VK+L  D D G+I LS+K       + I
Sbjct: 212 GLVHISQLAHERVETPSDVVQEGEQVKVKVLSVDRDNGRISLSIKDTLPGPWEGI 266



 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I        +  G V +++ FGAFV      +GLVHISQ+S + V+   +V++EG 
Sbjct: 262 PWEGIEQKAPKGTVLTGTVKRLVSFGAFVEVFPGVEGLVHISQISHKHVSTPHEVLREGQ 321

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
            V VK+LD +++  ++ LSMK ++Q   +
Sbjct: 322 EVQVKVLDVNEQAHRLSLSMKELEQADTE 350



 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           EM         V    K  VVKV +    V   G++ DG++ IS+LS   +   SD VKE
Sbjct: 4   EMNEIEVRSLSVGDKVKASVVKVEEKQVLVSIEGSKVDGIIPISELSNLHIETASDAVKE 63

Query: 667 GDTVWVKLLDFDD 679
           GD + + +   ++
Sbjct: 64  GDELNLVVTKVEE 76


>gi|210631374|ref|ZP_03296877.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279]
 gi|210160057|gb|EEA91028.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279]
          Length = 386

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +   +++++    G  I   V +     N      V      L E   A      I    
Sbjct: 151 VDLRRVKDLTSYLGTRIEARVIEMDRNRN----NVVLSRRVVLEESRKA--ERSEILSKL 204

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     KG V  ++DFGAFV   G  DGL+HIS+LS   V   S+VVK G  V V++LD 
Sbjct: 205 KSGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDV 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R +I L +K   ++  + +V
Sbjct: 264 DLNRERISLGLKQTTEDPWRALV 286



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R++     V  I +G V K++ FGAFV      +GLVHIS+++ + V + + V   G
Sbjct: 280 DPWRALVKKYPVGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQVTAVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             V VK+++ D DR +I LSMK   +  G  I
Sbjct: 340 AKVQVKVMEIDLDRRRISLSMKSAAETLGIEI 371



 Score = 46.4 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      V      +G++ + +LS  + A  +D+V  GD++   +L   D 
Sbjct: 35  DLVNGTVVKIERDEVLVDIGFKSEGVIPVRELSIRKDANPADLVALGDSIEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K  +
Sbjct: 95  DGRLVLSKKRAE 106


>gi|281357105|ref|ZP_06243595.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548]
 gi|281316663|gb|EFB00687.1| ribosomal protein S1 [Victivallis vadensis ATCC BAA-548]
          Length = 607

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A  +   +I D+ +V  + KG+V K+  FGAFV      DGL+HISQLS +RV K  DV
Sbjct: 476 QAETDPWANINDLYKVGDVVKGKVTKIAAFGAFVELTNKIDGLIHISQLSRDRVEKVKDV 535

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +  GD V  +++  D D  +I LS+K V +N
Sbjct: 536 LNVGDEVEARVIKVDTDERRIGLSIKAVGEN 566



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +G    +   I ++   K+   +     I  S    +E   +  RS      +V+++ KG
Sbjct: 179 VGPVHNMDDYIGKEFDVKIIKINLDRRNIVVSRRELLEETLKDQRSKLLGEMKVDELRKG 238

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + DFGAF+   G  DGL+HI+ +S  R++  S+V+K G+ + V ++  D ++ ++ 
Sbjct: 239 VVKNITDFGAFIDL-GGVDGLLHITDISWGRISHPSEVLKVGEEIEVVIIGIDKEKERVS 297

Query: 685 LSMKVVDQNTGKPIV 699
           L +K   +N    +V
Sbjct: 298 LGLKQKTRNPWDDVV 312



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 96/250 (38%), Gaps = 22/250 (8%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----------GITAMQMDMKIGGIS 513
           G ++      I+ D+ G    L      V    +            I  + +D +   +S
Sbjct: 151 GFMRHRVKGGIMVDVEGFPAFLPGSQLDVGPVHNMDDYIGKEFDVKIIKINLDRRNIVVS 210

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIG 568
              ++    + +R +L    ++ ++       + +F   +++  +       D     I 
Sbjct: 211 RRELLEETLKDQRSKLLGEMKVDELRKGVVKNITDFGAFIDLGGVDGLLHITDISWGRIS 270

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
              +V++   E     + ID +                R     +           G+VV
Sbjct: 271 HPSEVLKVGEEIEVVIIGIDKEKERVSLGLKQ----KTRNPWDDVVSKYPKGSKINGKVV 326

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            +M +GAFV      +GL+H+S++S  +RV+K SDV+  G+ V   +LD D D  KI L 
Sbjct: 327 NIMPYGAFVEIETGVEGLIHVSEMSWTKRVSKASDVLSIGEEVEAVVLDIDRDSRKISLG 386

Query: 687 MKVVDQNTGK 696
           ++  ++N  +
Sbjct: 387 LRQKERNPWE 396



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSD 662
           +  R     + +   V +   G+V  +  +GAFV      DG++H+S +S  R +   ++
Sbjct: 389 QKERNPWEVLAEKYPVGRRITGKVRNMTSYGAFVEIENDIDGMIHVSDMSWTRKINNPNE 448

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           V+K G  V   +LD + ++ +I L +K  + +    I
Sbjct: 449 VLKPGQEVEAIILDINPEQQRISLGLKQAETDPWANI 485



 Score = 37.6 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
             T+     KI +G++V     GA V      +G V  S+          D    GD + 
Sbjct: 57  ESTNAFTKGKIVEGKIVAKRPDGALVDIGYKAEGFVPASEFLK------FDEANIGDKID 110

Query: 672 VKLLDFDDRGK---IKL----SMKVVDQNTGK 696
           V L + ++R     I L    S+K  ++ T +
Sbjct: 111 VYLEEIENRNNMPEISLEKAYSIKAWNRITTE 142


>gi|159163874|pdb|2CQO|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human
           Hypothetical Protein Flj11067
          Length = 119

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 12  RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 71

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 72  DKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 105


>gi|162210774|ref|YP_562760.2| 30S ribosomal protein S1 [Shewanella denitrificans OS217]
          Length = 555

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 23/257 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE------------DHLGHMDFKVAGTDSGITA 502
           +   V  I  G+V         S IS DE                 +         G T 
Sbjct: 24  VRGTVVAIENGMVLVDAGLKSESPISADEFKNAQGVLEIQVGDEVDVALDSVEDGFGETQ 83

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +  +      +  ++  A + A+     I  ++    +     +  F P      +    
Sbjct: 84  LSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGIRAFLPGSL---VDVRP 140

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   +  K +   V +   K N      V ++  ++ E E++ E    + ++ E   +
Sbjct: 141 VRDTAHLEYKELEFKVIKLDQKRN-----NVVVSRRAVIESESSAERDALLENLQEGQAV 195

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R 
Sbjct: 196 -KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERT 253

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K + ++    I
Sbjct: 254 RVSLGLKQLGEDPWLEI 270



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     + 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPEST 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 KLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKVNPWDD 356



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           ++              
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKVN----PWDDFATRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   G  V      +G V ++ +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGTVVNGTVSAVDAKGVTVELADTVEGYVRVADISAERIEDASTVYTVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  + +  D + + I LS+K  D+   K  +
Sbjct: 499 DAIEARFMGVDRKNRSISLSIKAKDEAEQKEAI 531


>gi|37678418|ref|NP_933027.1| transcriptional accessory protein [Vibrio vulnificus YJ016]
 gi|37197157|dbj|BAC92998.1| transcriptional accessory protein [Vibrio vulnificus YJ016]
          Length = 763

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHNVSDLEVGMILEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   V+   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|288905182|ref|YP_003430404.1| 30S ribosomal protein S1 homolog [Streptococcus gallolyticus UCN34]
 gi|306831252|ref|ZP_07464412.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978156|ref|YP_004287872.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731908|emb|CBI13473.1| 30S ribosomal protein S1 homolog [Streptococcus gallolyticus UCN34]
 gi|304426488|gb|EFM29600.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178084|emb|CBZ48128.1| 30S ribosomal protein S1 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 398

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVVEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+LD +    ++ LS+K +++   +
Sbjct: 328 EVNVKVLDVNAAAERVSLSIKALEERPAQ 356


>gi|157373314|ref|YP_001471914.1| RNA-binding S1 domain-containing protein [Shewanella sediminis
           HAW-EB3]
 gi|157315688|gb|ABV34786.1| RNA binding S1 domain protein [Shewanella sediminis HAW-EB3]
          Length = 804

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             I E+ G     +I  +              A  +         +++ I +G V  V +
Sbjct: 626 DFITEKFGLPTVTDILTELDKPGRDPRGEFKTATFKEGVEEVKDLKLDMILEGVVTNVTN 685

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS L+ + V+    VVK GD V VK++  D +R +I LSM++ +
Sbjct: 686 FGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMQVDVERKRIGLSMRLDE 745

Query: 692 QNTGKP 697
           +    P
Sbjct: 746 KAADMP 751


>gi|170724124|ref|YP_001751812.1| RNA-binding S1 domain-containing protein [Pseudomonas putida W619]
 gi|169762127|gb|ACA75443.1| RNA binding S1 domain protein [Pseudomonas putida W619]
          Length = 774

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A    + IR++IG  G + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVKRIAADTGRDIRSLIGDSGFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQV 627
               K   D+   +   +  L E++      R                  E   I +G V
Sbjct: 599 --DPKQFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
 gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
          Length = 308

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 9/187 (4%)

Query: 301 KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
           + ++  +     R DGR  +  R   A++G++    GS+    G+T+ IV V    RE  
Sbjct: 31  ERLQEALGKDGKRKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSV-FDPRE-- 87

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
                    +  +      F P A   V +      RE         A++P + +     
Sbjct: 88  -IPKQNKFCELGELFCDLKFSPFA-PAVRKTHQTDARERSMTAALTSALNPSVCRHLFPN 145

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + + + + E DGS+    +  + LAL DA VP+   V     G++ D     ++ D +
Sbjct: 146 LQIDVFANVLEDDGSALAVAITAAGLALGDACVPMFDIVTAATAGVLGD----RVVMDPT 201

Query: 481 GDEDHLG 487
            +E+ L 
Sbjct: 202 AEEEALC 208



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT-----VNYQERTYAVGKIPGGYLRRE 81
           + G+     G T V+ +V   R +     F  L      + +     AV K      R  
Sbjct: 65  AKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFCDLKFSPFAPAVRKTHQTDARER 124

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
              +    L S +     R LF      +  V  NV++ D   S   V++ AA  AL  +
Sbjct: 125 ---SMTAALTSALNPSVCRHLFPN---LQIDVFANVLEDDG--SALAVAITAAGLALGDA 176

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
            +P    V  A    +  + V++P  +E+     L ++G  +    + + A   + D V 
Sbjct: 177 CVPMFDIVTAATAGVLGDRVVMDPTAEEEA----LCLAGHTEENHGLVMLAKLPTLDQVP 232

Query: 202 DAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLE 241
           +   +G  + + + +   +L   C     V+     SK++
Sbjct: 233 EIWQYGFVDVELLWDTCKQLNAACGDLVPVVQHLLVSKVK 272


>gi|332993175|gb|AEF03230.1| 30S ribosomal protein S1 [Alteromonas sp. SN2]
          Length = 556

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A       +  I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETILSREKAKRHEAWVELEKAYDDKVTIKGIINGKVKGGFTVEVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +  AK N      V ++  ++ E E
Sbjct: 126 TVRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E ++I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERESLLANLEEGHEI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD ++ ++ L MK +  +  + I 
Sbjct: 236 NVGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIA 271



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--------PEVNKIY 623
            +    V+     VN+ D+  VK+      +   +  M +   D         PE  KI 
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKI- 280

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            GQV  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D+ R 
Sbjct: 281 SGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVDVMVLEIDEERR 340

Query: 682 KIKLSMKVVDQNTGK 696
           +I L +K    N  +
Sbjct: 341 RISLGLKQCIDNPWE 355



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 131/361 (36%), Gaps = 64/361 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +      
Sbjct: 112 INGKVKGGFTVEVNTVRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDAKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ S+   ++    LA ++ G  I         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIEAESSAERESL----LANLEEGHEIK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +  ++ +  +  +          + +  +   M +
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFD----------KEKQRVSLGMKQ 261

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + ++   ++    P    ++     + +      I  G + +  + E      NI     
Sbjct: 262 MGNDPWQEIASRYPEGTKISGQVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKV 321

Query: 593 VKIASSSLAEIEAARE---------------MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +  +    +    E                  +     E      G++  + DFG F+
Sbjct: 322 VNLGDTVDVMVLEIDEERRRISLGLKQCIDNPWETFAKSHEKGDKVSGKIKSITDFGIFI 381

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              G  DGLVH+S +S        D V   K+GD +   +L  D +R +I L +K ++++
Sbjct: 382 GLDGGIDGLVHLSDISWN--KSGEDAVRDYKKGDEISAVVLQVDPERERISLGVKQIEED 439

Query: 694 T 694
            
Sbjct: 440 P 440



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V +V   G  V+     DG + ++ LS +R+   ++    GD++  K +  D + 
Sbjct: 453 IVVGTVTEVDAKGVTVNLSEEVDGYIRVADLSVDRIEDATEAANVGDSIEAKFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K  DQ   K  +
Sbjct: 513 RTVNLSVKAKDQADEKEAI 531


>gi|21910164|ref|NP_664432.1| 30S ribosomal protein S1 [Streptococcus pyogenes MGAS315]
 gi|28896137|ref|NP_802487.1| 30S ribosomal protein S1 [Streptococcus pyogenes SSI-1]
 gi|21904357|gb|AAM79235.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes MGAS315]
 gi|28811387|dbj|BAC64320.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus pyogenes SSI-1]
          Length = 401

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + + +V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVVESKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQ 356



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    IE A +  R+          +  G V ++  F
Sbjct: 148 KFVGQEFDAKIKEVDAAENRFILSRREVIEEAAKEARAEVFSKISEGAVVTGTVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|109701062|gb|ABG40982.1| SSU ribosomal protein S1P [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +   +  A    +  +  I  ++    +     +
Sbjct: 90  VDVALDAIEDGFGETILSREKAKRHEAWVELEKAYDDKETIKGVINGKVKGGFTVEVNTV 149

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   + GK +   V +  AK N      V ++  ++ E E++
Sbjct: 150 RAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESS 201

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E  + + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 202 AERDQLLANLEEGHEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 259

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD + VK+L FD ++ ++ L MK +  +  + I 
Sbjct: 260 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIA 293



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIY------K 624
            +    V+     VN+ D+  VK+      +   +  M +       E+ + Y       
Sbjct: 244 DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLS 303

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D+ R +
Sbjct: 304 GAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRR 363

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 364 ISLGLKQCKPNPWEE 378



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 130/361 (36%), Gaps = 64/361 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +      
Sbjct: 134 INGKVKGGFTVEVNTVRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDAKRN 186

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ S+    +    LA ++ G  +         G+VK+  D+    D+
Sbjct: 187 NV-VVSRRAVIEAESSAERDQL----LANLEEGHEVK--------GIVKNLTDYGAFVDL 233

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +  ++ +  +  +          + +  +   M +
Sbjct: 234 GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFD----------KEKSRVSLGMKQ 283

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + ++   ++ E  P    ++     + +      I  G + +  + E      NI     
Sbjct: 284 MGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKV 343

Query: 593 VKIASSSLAEIEAARE---------------MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +  +    +    E                               G++  + DFG F+
Sbjct: 344 VNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIKSITDFGIFI 403

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              G  DGLVH+S +S  +     D V+E   GD +   +L  D +R +I L +K ++++
Sbjct: 404 GLDGGIDGLVHLSDISWNKTG--EDAVREYKKGDEISAVVLQVDPERERISLGVKQIEED 461

Query: 694 T 694
            
Sbjct: 462 P 462



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I  G V +V   G  V      +G +  + L+ ERV   S+V   G
Sbjct: 461 DPFNQYLTDTKKGTIVVGTVTEVDAKGVTVKLAEEVEGYIRATDLARERVEDASEVASVG 520

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQNTGKP 697
           D +  K +  D + +I  LS+K  DQ   K 
Sbjct: 521 DEIEAKFMGVDRKNRIVNLSVKAKDQADEKE 551


>gi|53804257|ref|YP_113870.1| 30S ribosomal protein S1 [Methylococcus capsulatus str. Bath]
 gi|53758018|gb|AAU92309.1| ribosomal protein S1 [Methylococcus capsulatus str. Bath]
          Length = 555

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 84/216 (38%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +   +     G T +  D      +   +  A +  +     I+ ++    + +  
Sbjct: 66  DQVEVALDMVEDGLGATLLSRDKAKKLKAWEDLEKAFENNETVVGRIVGKVRGGFTVAIG 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            L  F P      +    +R+   + G+ +   V      + ID      + S       
Sbjct: 126 ALRAFLPGSL---VDVRPVRDTAFLEGRDLEFKV------IKIDQKRNNVVLSRRAVVES 176

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                  ++ +  +   I  G V  + D+GAF+   G  DGL+HI+ ++ +RV   S+ V
Sbjct: 177 EFSAEKEALMESLKEGAIVTGVVKNLTDYGAFIDL-GGIDGLLHITDMAWKRVRHPSEAV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           + G  + VK+L +D ++ ++ L +K + ++    I 
Sbjct: 236 QIGQELQVKVLKYDQEKNRVSLGLKQLGEDPWVNIA 271



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + D+G FV      +GLVH+S++    +    + VV+ 
Sbjct: 265 DPWVNIARRYPAGTRLFGKVSNLTDYGCFVELEEGVEGLVHVSEMDWTNKNVNPAKVVQL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +LD D +R +I L MK   QN    
Sbjct: 325 GEEVEVMVLDIDEERRRISLGMKQCRQNPWDE 356



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++  ++     +   I +G V +V   GA +      +G +  S++  +RV     ++  
Sbjct: 438 QDPFQNFLAAHDKGSIVRGVVKEVDAKGAVITLADNVEGYLRASEIQRDRVEDARALLNV 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           GD +  K +  D + K I LS+K  DQ+ 
Sbjct: 498 GDEIEAKFIGVDKKTKSISLSIKSKDQDE 526



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++                +          +  +  +G +  + DFG F+   G  D
Sbjct: 333 LDIDEERRRISLGMKQCR----QNPWDEFAATHKKGEKIRGTIKSITDFGIFIGLDGNID 388

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   V     +   K+GD +   +L  D +R +I L +K ++Q+ 
Sbjct: 389 GLVHLSDISWS-VPGEEAIRQFKKGDELETVILAIDPERERISLGIKQLEQDP 440


>gi|253690273|ref|YP_003019463.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756851|gb|ACT14927.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 777

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|149675741|dbj|BAF64753.1| ribosomal protein S1 [Shewanella livingstonensis]
          Length = 555

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 23/257 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE------------DHLGHMDFKVAGTDSGITA 502
           +   V  I  G+V         S I+ DE                 +         G T 
Sbjct: 24  VRGTVVAIENGMVLVDAGLKSESPINADEFKNAQGVLEIQVGDEVDVALDSVEDGFGETQ 83

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +  +      +  ++  A + A+     I  ++    +     +  F P      +    
Sbjct: 84  LSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGIRAFLPGSL---VDVRP 140

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   +  K +   V +   K N      V ++  ++ E E++ E    + ++ E   +
Sbjct: 141 VRDTAHLEYKELEFKVIKLDQKRN-----NVVVSRRAVIESESSAERDTLLENLQEGQAV 195

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R 
Sbjct: 196 -KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERT 253

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K + ++    I
Sbjct: 254 RVSLGLKQLGEDPWLEI 270



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDTLLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     + 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPEST 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKHIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKVNPWDD 356



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 16/140 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I P ++ N+    G  +  +V      ++ID++           ++             
Sbjct: 315 HIHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKVN----PWDDFATR 360

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLL 675
                   G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L
Sbjct: 361 YNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K  + + 
Sbjct: 421 SVDPERERISLGVKQTEDDP 440



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   G  V      +G + ++ +S +R+   S V   G
Sbjct: 439 DPFNAYLADKKKGTVVHGTVSAVDAKGVTVELAETVEGYIRVADISADRIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  K +  D + + I LS+K  D+   K  +
Sbjct: 499 DAIEAKFMGVDRKNRSISLSIKAKDEAEQKEAI 531


>gi|313678983|ref|YP_004056722.1| SSU ribosomal protein s1p [Oceanithermus profundus DSM 14977]
 gi|313151698|gb|ADR35549.1| SSU ribosomal protein S1P [Oceanithermus profundus DSM 14977]
          Length = 597

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   ++  +    G+ I   + +   K      G V ++   L E +  ++    +  +
Sbjct: 204 QVDIKRVAELDEFVGQTIPVKITEINRK-----KGRVILSRRVLLEEDQKKKRAEVLEGL 258

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               ++ +G+VV+V DFGAFV+  GA DGL+H S+LS  R     +VVK GD V  K+L 
Sbjct: 259 EPGAEV-EGKVVEVTDFGAFVNL-GAIDGLIHRSELSWGRFEHPREVVKVGDEVKAKVLS 316

Query: 677 FD-DRGKIKLSMKVVDQNTGK 696
            D +R ++ LS+K +  +  +
Sbjct: 317 VDKERERVNLSIKALTPDPWQ 337



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  ++  +  EV +  KG+VV +  FGAFV      +GL+HI+++S  +R    S+V+KE
Sbjct: 334 DPWQTAAEKYEVGQRIKGKVVGLTPFGAFVEIEPGLEGLIHITEMSWTKRPRHPSEVLKE 393

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G+ V   +L  D ++ ++ L ++    +  K +
Sbjct: 394 GEEVEAVVLRIDPEQRRLSLGLRQTLPDPWKEL 426



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + + +      + KG++  V DFG FV      +GLVHIS+L  E +   ++  K+G
Sbjct: 421 DPWKELPEKYPPGTVVKGKITGVTDFGVFVEIEDGIEGLVHISELDYEHIDNPAEKFKKG 480

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           + + V +L+ D    ++ LS K +    
Sbjct: 481 EELEVVVLNIDATDQRVSLSRKRLLPPP 508


>gi|114563294|ref|YP_750807.1| 30S ribosomal protein S1 [Shewanella frigidimarina NCIMB 400]
 gi|114334587|gb|ABI71969.1| SSU ribosomal protein S1P [Shewanella frigidimarina NCIMB 400]
          Length = 555

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 23/257 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE------------DHLGHMDFKVAGTDSGITA 502
           +   V  I  G+V         S I+ DE                 +         G T 
Sbjct: 24  VRGTVVAIENGMVLVDAGLKSESPINADEFKNAQGVLEIQVGDEVDVALDSVEDGFGETQ 83

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +  +      +  ++  A + A+     I  ++    +     +  F P      +    
Sbjct: 84  LSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGIRAFLPGSL---VDVRP 140

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   +  K +   V +   K N      V ++  ++ E E++ E    + ++ E   +
Sbjct: 141 VRDTAHLEYKELEFKVIKLDQKRN-----NVVVSRRAVIESESSAERDTLLENLQEGQAV 195

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R 
Sbjct: 196 -KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERT 253

Query: 682 KIKLSMKVVDQNTGKPI 698
           ++ L +K + ++    I
Sbjct: 254 RVSLGLKQLGEDPWLEI 270



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDTLLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     + 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPEST 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKVNPWDD 356



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +  ++ +  +  +       
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +  L++ +  P    +      + +      I  G + +  +
Sbjct: 250 ---RERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHV 306

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------------- 622
            E      NI     V +       +    E  R I+   +  K+               
Sbjct: 307 SEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFATRYNKGDK 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
             G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L  D +R
Sbjct: 367 VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K  + + 
Sbjct: 427 ERISLGVKQTEDDP 440



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   G  V      +G + ++ +S +R+   S V   G
Sbjct: 439 DPFNAYLADKKKGTVVHGTVSAVDAKGVTVELAETVEGYIRVADISADRIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  K +  D + + I LS+K  D+   K  +
Sbjct: 499 DAIEAKFMGVDRKNRSISLSIKAKDEAEQKEAI 531


>gi|256829796|ref|YP_003158524.1| RNA binding S1 domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578972|gb|ACU90108.1| RNA binding S1 domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 472

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 16/211 (7%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
           V  TD  +   +    IGG+  N++  A          +  ++        L+   F P 
Sbjct: 75  VGVTDDSVRLSKALTGIGGL--NMLEDAYNSGVPVEGKVREQIKGGFHVEILKHRAFCPV 132

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
            +I A       + +G   +     V + G  +         + S      E  ++   S
Sbjct: 133 SQIDARYVATPEDYVGQTLQFRITKVSENGRNI---------VVSRRALLEEEQKQASAS 183

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
             +      I +G V ++  FGAFV      +GLVHIS+++  R+    +++  GD V V
Sbjct: 184 FFETVSDGDIVEGTVTRLAAFGAFVELVPGVEGLVHISEIAWARIQSPEEILSVGDKVRV 243

Query: 673 KLLDFD-----DRGKIKLSMKVVDQNTGKPI 698
           K L           ++ LS+K    +  K I
Sbjct: 244 KYLGTSAGKKPGETRLSLSIKQAQDDPWKTI 274



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           +A  +  ++I +  +      G+VVK+MDFGAFV      +GLVH+S++S  +R+ K  D
Sbjct: 265 QAQDDPWKTIGERFKDGDKVTGKVVKLMDFGAFVEIAPGIEGLVHVSEMSYAKRINKPGD 324

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           VV+ GD V   +   D ++ +I LSM+  + +  
Sbjct: 325 VVQVGDMVAAVVKQIDVEKQRISLSMRDAEGDPW 358



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 9/177 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           + ++++QA+      + E  K   +   ++ +       + I P  I  ++ +       
Sbjct: 259 LSLSIKQAQDDPWKTIGERFKDGDKVTGKVVKLMDFGAFVEIAPG-IEGLVHVSEMSYAK 317

Query: 577 IVEQTGAKVNIDD-------DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            + + G  V + D          V+    SL+  +A  +   ++ +   V +  +G V K
Sbjct: 318 RINKPGDVVQVGDMVAAVVKQIDVEKQRISLSMRDAEGDPWMNVAEKYPVGQTVQGTVEK 377

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
              FG F+       GL+  S +S        D +  GDTV V +   +    KI L
Sbjct: 378 RQQFGLFISLEPGVTGLLPQSVMSRADGEVKFDKLNTGDTVVVSIESVNLRERKISL 434


>gi|117617800|ref|YP_856344.1| 30S ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559207|gb|ABK36155.1| ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 556

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 21/261 (8%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
            G  +   V  I  G V         S I  +E      + ++   DS    + +D    
Sbjct: 20  QGSIVKGTVVAIENGFVLVDAGLKSESAIPAEEFKNAMGELEINVGDS--VDVALDSIED 77

Query: 511 GISENIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIP 559
           G  E  +             L++A   +  ++  ++ KV     ++L      +    + 
Sbjct: 78  GFGETKLSREKAKRHEAWLQLEKAYEEQATVIGIINGKVKGGFTVELNGIRAFLPGSLVD 137

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              IR+   +  K +   V +   K N      V ++  ++ E E   E    + ++ E 
Sbjct: 138 VRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIETENTSERESLLANLQEG 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD 
Sbjct: 193 QEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEIAVKVLKFDR 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L +K + ++    I 
Sbjct: 251 ERTRVSLGLKQLGEDPWVAIA 271



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG+V +V   GA +      +G +  S  + +RV   + V+  GD V  K +  D + 
Sbjct: 453 IVKGKVTEVDAKGAVIELADGVEGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + + LS++  D+   +
Sbjct: 513 RTVSLSVRAKDEADER 528



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKE 666
             +   +         G++  + DFG F+   G  DGLVH+S +S          +  K+
Sbjct: 353 PWQLFAETHAKGDRVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNNQGEEAVRE-FKK 411

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD +   +L  D +R +I L +K ++++ 
Sbjct: 412 GDEIEAVVLQVDPERERISLGVKQIEEDP 440



 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTS-DVVK 665
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S  V  
Sbjct: 265 DPWVAIAKRYPETTRLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                 + L   ++R +I L +K    N  +
Sbjct: 325 GDVVDVMVLDIDEERRRISLGLKQCKSNPWQ 355


>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
 gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
          Length = 250

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 14/253 (5%)

Query: 296 EDIQAKVVRT-VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
           + ++ +  R  V      R+DGR ++  R    + G ++   GS+    GDT+ IV V  
Sbjct: 9   QALEEEPHRAPVFSSDGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSV-F 67

Query: 355 GTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP 414
           G RE  +  ++ S   R +  + Y     AT    +MGA +  E     +  +++   + 
Sbjct: 68  GPRES-KKAEAFSDAGRLNCNVKYC--SFATPVRGKMGAANAEERDLSSMLYKSVVGAVD 124

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI 474
                  T+ + + + +S G      V  +SLAL DAG+ +   VA +++  ++      
Sbjct: 125 LRTFPKTTVDVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVSVSSIQ----GQ 180

Query: 475 ILSDISGDEDHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +L D S  E++       VA       IT +      G  S +    +L         I 
Sbjct: 181 VLLDPSTSEENCEDGSLMVAYMPSRKEITQV---TMTGEWSSSRASESLDLCLDACAKIG 237

Query: 533 NEMSKVLSESRLQ 545
           + M   L E+  Q
Sbjct: 238 DVMRSCLKEAAAQ 250



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 13/215 (6%)

Query: 20  TGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGKIPGGYL 78
           TG + R + G+  A  G+T V+ +V   R  K  + F     +N   +  +      G  
Sbjct: 43  TGAV-RAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNCNVKYCSFATPVRG-- 99

Query: 79  RRESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
            +       E  +S M+ +S+          K    V   V+Q      P +V+   AS 
Sbjct: 100 -KMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQSGGGDLPVIVTC--ASL 156

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEAN 193
           AL  +G+     V    V  I GQ +L+P   E+    GSL +    ++  +  V +   
Sbjct: 157 ALADAGIVLYDLVAAVSVSSIQGQVLLDPSTSEENCEDGSLMVAYMPSRKEITQVTMTG- 215

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           + S     +++    + C  + + +    K  A +
Sbjct: 216 EWSSSRASESLDLCLDACAKIGDVMRSCLKEAAAQ 250


>gi|332306876|ref|YP_004434727.1| ribosomal protein S1 [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174205|gb|AEE23459.1| ribosomal protein S1 [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 579

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +   +  A    +  +  I  ++    +     +
Sbjct: 90  VDVALDAIEDGFGETILSREKAKRHEAWVELEKAYDDKETIKGVINGKVKGGFTVEVNTV 149

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   + GK +   V +  AK N      V ++  ++ E E++
Sbjct: 150 RAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAESS 201

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E  + + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 202 AERDQLLANLEEGHEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 259

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD + VK+L FD ++ ++ L MK +  +  + I 
Sbjct: 260 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIA 293



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIY------K 624
            +    V+     VN+ D+  VK+      +   +  M +       E+ + Y       
Sbjct: 244 DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLS 303

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D+ R +
Sbjct: 304 GAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRR 363

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 364 ISLGLKQCKPNPWEE 378



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 130/361 (36%), Gaps = 64/361 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +      
Sbjct: 134 INGKVKGGFTVEVNTVRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDAKRN 186

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ S+    +    LA ++ G  +         G+VK+  D+    D+
Sbjct: 187 NV-VVSRRAVIEAESSAERDQL----LANLEEGHEVK--------GIVKNLTDYGAFVDL 233

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +  ++ +  +  +          + +  +   M +
Sbjct: 234 GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFD----------KEKSRVSLGMKQ 283

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + ++   ++ E  P    ++     + +      I  G + +  + E      NI     
Sbjct: 284 MGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKV 343

Query: 593 VKIASSSLAEIEAARE---------------MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +  +    +    E                               G++  + DFG F+
Sbjct: 344 VNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIKSITDFGIFI 403

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              G  DGLVH+S +S  +     D V+E   GD +   +L  D +R +I L +K ++++
Sbjct: 404 GLDGGIDGLVHLSDISWNKTG--EDAVREYKKGDEISAVVLQVDPERERISLGVKQIEED 461

Query: 694 T 694
            
Sbjct: 462 P 462



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I  G V +V   G  V      +G + ++ L+ ERV   S+V   G
Sbjct: 461 DPFNQYLTDTKKGTIVVGTVTEVDAKGVTVKLAEEVEGYIRVTDLARERVEDASEVASVG 520

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQNTGKP 697
           D +  K +  D + +I  LS+K  DQ   K 
Sbjct: 521 DEIEAKFMGVDRKNRIVNLSVKAKDQADEKE 551


>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
          Length = 511

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 92/250 (36%), Gaps = 18/250 (7%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ- 361
           +R V +D  +R+DGR    +R   A+V       GSS    G+T+ + V+T G  E  Q 
Sbjct: 227 IRQVWIDSLLRVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLT-GPSEVGQS 285

Query: 362 -----------YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
                              +  + +++      ++    R     +R         R + 
Sbjct: 286 RARMAGGGGGGGGGGGGDAKDAEVIVNIVVAGFSSVNRQRRSRQDKRTQEMAATISRTLA 345

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA----GIAMGL 466
            VL        T+ I   +   DGS   A +  ++LA +DAG+P++  V     G +   
Sbjct: 346 AVLHTHLYPRSTITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSSSSY 405

Query: 467 VKDGDDFIILSDIS-GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
               D    L D++  +E  L  +     G    + A+  + ++       M+       
Sbjct: 406 AAADDAADPLLDLNLQEEQELPGLTVATLGASDRVAALVCESRVQAGRLEGMLAVAVDGC 465

Query: 526 RGRLHILNEM 535
           +    IL+++
Sbjct: 466 KQVRAILDKV 475



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY---------QERTYAVGKIPGGY 77
           +DG+     G T V+  +     +   +                  ++    V  +  G+
Sbjct: 259 ADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGGGGGGGGGDAKDAEVIVNIVVAGF 318

Query: 78  ----LRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSM 131
                +R SR  +    ++  I R++  +       ++   + ++V+  D   S     +
Sbjct: 319 SSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLYPRSTITISLHVLSQDG--SLLAALI 376

Query: 132 VAASAALMLSGLPFEGPV 149
            AA+ A + +G+P    V
Sbjct: 377 NAATLAAVDAGIPMADYV 394


>gi|284991621|ref|YP_003410175.1| RNA binding S1 domain-containing protein [Geodermatophilus obscurus
           DSM 43160]
 gi|284064866|gb|ADB75804.1| RNA binding S1 domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 488

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+ GD + VK++D D DR +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRIS 362

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 363 LSLKQANE 370



 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S    +E  +  +RS   +     ++  G V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRQWLEQTQSEVRSEFLNKLAKGQVRTGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWR 288



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 40  DIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|127512882|ref|YP_001094079.1| 30S ribosomal protein S1 [Shewanella loihica PV-4]
 gi|126638177|gb|ABO23820.1| SSU ribosomal protein S1P [Shewanella loihica PV-4]
          Length = 555

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDALLENLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V  V   G  +      +G + +S +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGAIVTGTVTAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           DTV  K +  D + + I LS++  D+   K 
Sbjct: 499 DTVESKFMGVDRKNRSISLSIRAKDEADEKE 529



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +            +  
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFAERY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S         SD  K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVSDY-KKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K  + + 
Sbjct: 421 SVDPERERISLGVKQTEDDP 440


>gi|291535706|emb|CBL08818.1| Transcriptional accessory protein [Roseburia intestinalis M50/1]
          Length = 752

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGA-KVNIDD--DGTVKIASSSLAEIEAAREMIR-SITD 615
            ++  + I       + + E+ G  ++ + D      K A     ++             
Sbjct: 616 KERRLDGISKKISNYKKLAEELGVGEITLQDIVKELEKPARDPREDMPKPILRSDVLEMK 675

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   I KG V  V+DFGAFV     +DGLVHISQ+S   +    +VV  GD V VK+L
Sbjct: 676 DLKPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKVL 735

Query: 676 DFD-DRGKIKLSMK 688
           D D  + +I L+MK
Sbjct: 736 DVDLKKQRIALTMK 749


>gi|239927485|ref|ZP_04684438.1| transcription accessory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291435829|ref|ZP_06575219.1| transcription accessory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291338724|gb|EFE65680.1| transcription accessory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 792

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A   AA +             + +G V  V  FGAFV     +DG
Sbjct: 618 DILKELEKPGRDPRPAFRTAAFKEGVEKISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVH+S +S   V    DVVK GD V VK+LD D  R +I L++++ D+  G+
Sbjct: 678 LVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDVDIPRKRISLTLRLDDEAAGQ 729


>gi|152988034|ref|YP_001351262.1| hypothetical protein PSPA7_5945 [Pseudomonas aeruginosa PA7]
 gi|150963192|gb|ABR85217.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 779

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 28/199 (14%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A    + IR++IG    + R    
Sbjct: 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTGRDIRSLIGDSAFLKRL--- 604

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E++      R      E  +            + +G V
Sbjct: 605 --EPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVV 662

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 663 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLS 722

Query: 687 MKVVD--------QNTGKP 697
           M++ D        Q  G+P
Sbjct: 723 MRMSDTPGEKVEGQRGGRP 741


>gi|331005891|ref|ZP_08329243.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC1989]
 gi|330420335|gb|EGG94649.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC1989]
          Length = 780

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G +  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+++ D  
Sbjct: 650 MILEGVITNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPRTVVKAGDIVKVKVMEVDIP 709

Query: 680 RGKIKLSMKVVDQ 692
           R +I LSM++ D+
Sbjct: 710 RKRIALSMRLEDE 722


>gi|242241593|ref|ZP_04796038.1| S1 family RNA-binding protein [Staphylococcus epidermidis W23144]
 gi|242234974|gb|EES37285.1| S1 family RNA-binding protein [Staphylococcus epidermidis W23144]
 gi|319399665|gb|EFV87919.1| general stress protein 13 [Staphylococcus epidermidis FRI909]
          Length = 133

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|256847157|ref|ZP_05552603.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
 gi|256715821|gb|EEU30796.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
          Length = 409

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + I+      I S      +   E  + I        + +G+V ++ +FGAF+
Sbjct: 159 QELEFKIIEIEPSENRLILSHKEIVKKEHEEAAKKIFSELAAGDVVEGKVARMTNFGAFI 218

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S++S + V K SDV++ G  V VK+L+ D +R +I LS+K        
Sbjct: 219 DL-GGVDGLVHVSEISYDHVDKPSDVLEVGQDVKVKVLNVDPERERISLSIKQTLPGPWD 277

Query: 697 PI 698
            I
Sbjct: 278 DI 279



 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V+ +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G 
Sbjct: 275 PWDDIEEKAAVDTVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQ 334

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+++ D +R ++ LS+K +++   
Sbjct: 335 EVKVKVINVDPERQRLGLSIKALEEKPA 362


>gi|251792146|ref|YP_003006866.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700]
 gi|247533533|gb|ACS96779.1| ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700]
          Length = 548

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   +   P     +++G     +   V +   K N      V ++  ++ E E+
Sbjct: 127 VRAFLPGSLVDTRPVRDADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVVESES 178

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +++    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V 
Sbjct: 179 SQDREEVLANLSEGAEV-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVN 236

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            GD + VK+L FD DR ++ L +K + Q+    I 
Sbjct: 237 VGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIA 271



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +       ++   +I +   VN    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K    N  
Sbjct: 342 ISLGLKQCKPNPW 354



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 128/366 (34%), Gaps = 58/366 (15%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           DEQ   +  ++G  +  F +  N    FLP +  +   +            L  + +   
Sbjct: 103 DEQATVLGLVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDAD-------HLLGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     V    LA +  G  +         G VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVVESESSQDREEV----LANLSEGAEVK--------GTVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        I+  ++     + +   
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDKDRTRVSL 257

Query: 529 --LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               +  +    ++E+     + T +V  +      +  + G+ G V   + E      N
Sbjct: 258 GLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLV--HVSEMDWTNKN 315

Query: 587 IDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVM 631
           I     V +       +    E  R                  +         G++  + 
Sbjct: 316 IHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIKSIT 375

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DFG F+   G  DGLVH+S +S   V     V   K+GD V   +L  D  + +I L +K
Sbjct: 376 DFGIFIGLEGGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVKERISLGIK 434

Query: 689 VVDQNT 694
            ++++ 
Sbjct: 435 QLEEDP 440



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +   +VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVAINKKGAVLNAKVVEADAKGAKVELDGGVEGYIRAADLTNE--------VAAG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS++  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVRAKDQ 516


>gi|26986988|ref|NP_742413.1| S1 RNA-binding domain-containing protein [Pseudomonas putida
           KT2440]
 gi|24981603|gb|AAN65877.1|AE016215_12 S1 RNA binding domain protein [Pseudomonas putida KT2440]
          Length = 861

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 10/185 (5%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIR---- 575
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG    + R    
Sbjct: 629 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDPK 688

Query: 576 GIVEQTG---AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
              ++T       +I  +              A  +         E   I +G V  V +
Sbjct: 689 KFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTN 748

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ D  R ++ LSM++ D
Sbjct: 749 FGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSD 808

Query: 692 QNTGK 696
               K
Sbjct: 809 TPGEK 813


>gi|315180636|gb|ADT87550.1| 30S ribosomal protein S1 [Vibrio furnissii NCTC 11218]
          Length = 556

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSVERDELLETLQEGTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVADNKKGVLVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRVEDASLILSIG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440


>gi|303239809|ref|ZP_07326333.1| RNA binding S1 domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592746|gb|EFL62470.1| RNA binding S1 domain protein [Acetivibrio cellulolyticus CD2]
          Length = 143

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + EV KI +G+V  + +FGAFV     + GLVHIS+++ E V      + E   V VK+
Sbjct: 1   MLVEVGKIVEGKVSGITNFGAFVQLSNGQTGLVHISEVAEEYVKDIKAHLNENQVVKVKI 60

Query: 675 LDFDDRGKIKLSM-KVVDQNTGKPIV 699
           +  D  GKI LS+ K +D    KP+V
Sbjct: 61  ISVDKNGKISLSIKKALDP---KPVV 83


>gi|260768940|ref|ZP_05877874.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
 gi|260616970|gb|EEX42155.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
          Length = 556

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A+     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSVERDELLETLQEGTEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 334 DIDEERRRISLGLKQCKANPWQ 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV   S ++  G
Sbjct: 439 DPFNAYVADNKKGVLVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRVEDASLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREYKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGVKQMENDP 440


>gi|187780230|ref|ZP_02996703.1| hypothetical protein CLOSPO_03826 [Clostridium sporogenes ATCC
           15579]
 gi|187773855|gb|EDU37657.1| hypothetical protein CLOSPO_03826 [Clostridium sporogenes ATCC
           15579]
          Length = 387

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A ++ +   + I   +          +  F P      I    ++++    G+ ++G
Sbjct: 104 LEKAFKKEEILEIKIEEIIKGGAIGHIESIRVFVPAS---QIDNKYVKDLNVFKGETVKG 160

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            + +   +      G V ++S  + E E A+        + +  KI  G V ++  FGAF
Sbjct: 161 RLIELDKQ-----KGKVVLSSRIVKEEEDAKRKEELWNSLEKGQKI-DGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V  +  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKNDPW 273



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A        +   +  D   V  + +G V
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKNDPWNTAKDKYAVGSVVEGTV 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           +K+++FGAF+      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 IKLLNFGAFIEVEKGIEGLVHISEITDENIAKPSENLNIGDRVKVKVLELNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K       + 
Sbjct: 351 IKEAIDKPKED 361


>gi|167947926|ref|ZP_02535000.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 64

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           MDFGAFV     +DGLVHISQ+S ERV K SD + EGD + VK+L+ D +G+I+LSMK V
Sbjct: 1   MDFGAFVTILPGKDGLVHISQISNERVEKVSDKLSEGDNIRVKVLEVDKQGRIRLSMKAV 60

Query: 691 DQ 692
           ++
Sbjct: 61  EE 62


>gi|16127817|ref|NP_422381.1| 30S ribosomal protein S1 [Caulobacter crescentus CB15]
 gi|13425331|gb|AAK25549.1| ribosomal protein S1 [Caulobacter crescentus CB15]
          Length = 565

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 28/259 (10%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDF------KVAGTDSGITAMQMDMKIGGISENI 516
           +MG     +  ++   + G E     +D       +V   + G+          G +  +
Sbjct: 17  SMGGRDFAEGTVVKGKVVGIEKDFAIIDVGLKTEGRVQLKEFGVDENGKATVKAGDTVEV 76

Query: 517 MVMALQQAK---------RGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIP------- 559
            +  L+ A            R      +  V + +   +G    RV+    +        
Sbjct: 77  FLERLENAMGEAVISREKAKREEAWTRLEGVYARNEPVMGAIVGRVKGGFTVDLGGASAF 136

Query: 560 -PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP 617
            P    ++  +         EQ  A + +D   G + ++  ++ E   A +    ++ + 
Sbjct: 137 LPGSQVDIRPVRDVGPLMGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVSQLQ 196

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  + D+GAFV   G  DGL+H++ +S +RV   S V+  GDTV V+++  
Sbjct: 197 EG-EIREGVVKNITDYGAFVDL-GGIDGLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVKI 254

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           + D  +I L MK +  +  
Sbjct: 255 NPDTQRISLGMKQLQSDPW 273



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A      +  +   V    +G+V    +FG FV      DG+VH+S +       +   
Sbjct: 354 QALANPWEAFLEAHPVGSTVEGEVKNATEFGLFVGLDNDIDGMVHLSDIDWSVPGEEAMA 413

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             K+GD V  K+LD D ++ +I L +K +  + 
Sbjct: 414 RYKKGDMVKAKVLDVDVEKERISLGIKQLAGDP 446



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 271 DPWDGVEAKYPVGAKFTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + ++ L +K    N  +
Sbjct: 331 SQEVDVVVLDVDPSKRRVSLGLKQALANPWE 361



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           F          +  S LS +R  +  +    GD V  ++ + D    ++ LS+K ++   
Sbjct: 474 FGEDDAPMTAFIRKSDLSRDRQEQRPERFAVGDRVDAQITNVDKAARRVSLSIKSLEMAE 533

Query: 695 GKPIV 699
            K  +
Sbjct: 534 EKEAI 538


>gi|312143877|ref|YP_003995323.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium sp.
           'sapolanicus']
 gi|311904528|gb|ADQ14969.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium sp.
           'sapolanicus']
          Length = 768

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 7/181 (3%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA--IPPDQIRNVIGMGGKVIRGIV 578
            +QA    +        + +E   ++         +   IP   +   IG    +   + 
Sbjct: 459 YEQAWEKIVEAHENDEIIEAEVTKEVKGGLVVNVGVRGFIPASHVA--IGYVDDLSDYVG 516

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFV 637
           E    KV   +     +  S+   +E  R   +  T    E  +   G+V K++DFGAF+
Sbjct: 517 ETLRLKVIEVERDNNNVVLSAKKVLEKERAAQKEETLEALEEGQTVSGKVTKLVDFGAFI 576

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  +GL+HIS++S  R+   S+V+ EG+ V VK+L  + +  +I L +K +  +  +
Sbjct: 577 DL-GGIEGLLHISEMSWGRIESPSEVLSEGEEVEVKVLGVNKEDERISLGLKQLLPDPWE 635

Query: 697 P 697
            
Sbjct: 636 E 636



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +     ++ +G++ K++DFGAF+      +GL+HISQLS   V    +VV  G
Sbjct: 632 DPWEEFAEKHYEGEVVEGKITKIVDFGAFMEVEKGIEGLIHISQLSHRHVKTADEVVSVG 691

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D    K+++ D ++ ++ LS+K +++  
Sbjct: 692 DVKEAKIINIDAEQERVGLSLKELEEKP 719



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRG 681
            +G VV++ D G +V      DG + +  LS   V    +VV+    + V +L   DD G
Sbjct: 389 VEGTVVEINDNGVYVDVNYKTDGFIPLRHLSHSPVEDPREVVEMDQKIEVVILTLEDDEG 448

Query: 682 KIKLSMKVVD-QNTGKPIV 699
            + LS K  D +   + IV
Sbjct: 449 NMILSKKQADYEQAWEKIV 467


>gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
 gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
          Length = 409

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +   +++++    G  I   V +     N      V ++   + E     E    +T + 
Sbjct: 163 VDLRRVKDLSAYMGTRIEARVIEMDRNRN-----NVVLSRRVVLEAARKAERSEILTKLK 217

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
              K+ KG V  +++FGAFV   G  DGL+HIS+LS   V   ++VVK G  V V++LD 
Sbjct: 218 PGMKL-KGTVSSIVEFGAFVDL-GGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDI 275

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R +I L +K   ++  + +V
Sbjct: 276 DLNRERISLGLKQTTEDPWRVLV 298



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R +     +  I +G V K++ FGAFV      +GLVHIS+++   V   + V K G
Sbjct: 292 DPWRVLVKKYPIGAIVEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKAHVDAPAQVCKVG 351

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V VK+++ D +R +I LS+K   +  G  
Sbjct: 352 DVVQVKVMEIDLERRRISLSIKAAAETLGTD 382



 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      +      +G++   +LS  + A   ++V  GDT+   +L   D 
Sbjct: 47  DLVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEELVHMGDTIEALVLQKEDK 106

Query: 680 RGKIKLSMKVVD 691
            G++ LS K  +
Sbjct: 107 EGRLILSKKRAE 118


>gi|71892158|ref|YP_277890.1| 30S ribosomal protein S1 [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796264|gb|AAZ41015.1| 30S ribosomal subunit protein S1 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 564

 Score = 94.6 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      S   +  A Q        I  ++    +    
Sbjct: 66  DYVDVTLDAVEDGFGETVLSREKAKRYESWVSLEQAHQNMTTVTGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   + G+     V +   K N      V ++  ++ E E
Sbjct: 126 GVRAFLPGSL---VDVKPIRDTSFLEGQAFEFKVIKLDHKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + +  + E  +I +G V  + D+GAF+   G  DGL+HI+ ++ +RV   SD+V
Sbjct: 178 NSVERDQLLNQLHEGIEI-RGVVKNLTDYGAFIDL-GGVDGLLHITDMAWKRVKHPSDIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    IV
Sbjct: 236 NVGDEIIVKVLRFDRERIRVSLGLKQLGEDPWAAIV 271



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+       I  +        +   +I    +      
Sbjct: 222 DMAWKRVKHPSDIVNVGDEIIVKVLRFDRERIRVSLGLKQLGEDPWAAIVQRHKEGSKLI 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           GQV  + D+G F+      +GLVH+S++    +    S VV  G++V V +LD D +R +
Sbjct: 282 GQVTNLTDYGCFIEIEDGVEGLVHVSEMDWTNKNIHPSKVVAVGESVEVMVLDIDKERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKINPWQ 355



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 130/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +   S        L  +A    + +      
Sbjct: 112 INGKVKGGFTVELNGVRAFLPGSLVDVKPIRDTS-------FLEGQAFEFKVIKLDHKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    L  +  G+ I         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDQL----LNQLHEGIEIR--------GVVKNLTDYGAFIDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +  ++ +      ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSDIVNVGDEIIV-----KVLRFDRERIRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              + +   +  +   +V  +      I    G+ G V    ++ T   +          
Sbjct: 267 WAAIVQRHKEGSKLIGQVTNLTDYGCFIEIEDGVEGLVHVSEMDWTNKNIHPSKVVAVGE 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID +           +I       +  +D+        G++  + DFG F+ 
Sbjct: 327 SVEVMVLDIDKERRRISLGLKQCKIN----PWQKFSDMYNRGDRVMGRIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   ++    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 383 LEGGIDGLVHLSDISW-YLSNEEAVNKYKKGDEIIAVVLQVDAERERISLGIKQLTEDP 440


>gi|326803716|ref|YP_004321534.1| putative ribosomal protein S1 [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650493|gb|AEA00676.1| putative ribosomal protein S1 [Aerococcus urinae ACS-120-V-Col10a]
          Length = 440

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V I+      I S      E A           E  ++ +G V ++ +FGAFV   G  D
Sbjct: 177 VEINPQENRLILSHKEIAREQAEAERAEKLAQFEEGEVVEGTVARLANFGAFVDL-GGID 235

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVHISQ++   V   SD ++ G TV VK+L  D DR +I LS K    +  + I
Sbjct: 236 GLVHISQIAHHHVNHPSDELEVGQTVKVKILSIDEDRDRISLSTKAATPSPWEDI 290



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 26/257 (10%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           I+ PV  +  G +            S  EDH         G +  +  ++++ +   +  
Sbjct: 129 ITVPVTKVVKGGLVVDAGVRGFIPASMVEDHFVRDFTPYKGKELEVKIVEINPQENRLIL 188

Query: 515 NIMVMALQQAKRGRLHILN--EMSKVLSESRLQLGEFTPRVEIMAIP------------P 560
           +   +A +QA+  R   L   E  +V+  +  +L  F   V++  I              
Sbjct: 189 SHKEIAREQAEAERAEKLAQFEEGEVVEGTVARLANFGAFVDLGGIDGLVHISQIAHHHV 248

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +   + + +G  V   I       ++ID+D      S+  A      ++        E++
Sbjct: 249 NHPSDELEVGQTVKVKI-------LSIDEDRDRISLSTKAATPSPWEDIEEKAPKGAELD 301

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +    +++DFGAFV      +GLVHISQ+S E V   SD ++EG  + VK+LD + +
Sbjct: 302 GVVR----RIVDFGAFVEVFPGVEGLVHISQISHEHVNHPSDKLEEGQDIKVKVLDVNPE 357

Query: 680 RGKIKLSMKVVDQNTGK 696
             ++ LS+K +++   +
Sbjct: 358 EHRLSLSIKALEEAPER 374


>gi|317050828|ref|YP_004111944.1| Tex-like protein [Desulfurispirillum indicum S5]
 gi|316945912|gb|ADU65388.1| Tex-like protein [Desulfurispirillum indicum S5]
          Length = 729

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           ++ +V+G   + +   +E     + +I  D T           +      +   +  E  
Sbjct: 598 KLGSVVGGSLEKVARELECGIPTLRDIVGDITKPGRDPRSEMEKPILRSSKLNLEEIEAG 657

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++++G V  V+DFGAFV      DGLVHIS+L+   V    +VV  G+ V V++L  D  
Sbjct: 658 QVFEGVVRNVVDFGAFVDIGLKNDGLVHISELADTFVKNPHEVVSVGNRVRVRVLSIDKS 717

Query: 680 RGKIKLSMKV 689
           RG++ LSMK 
Sbjct: 718 RGRLSLSMKT 727


>gi|260913556|ref|ZP_05920033.1| YhgF like protein [Pasteurella dagmatis ATCC 43325]
 gi|260632332|gb|EEX50506.1| YhgF like protein [Pasteurella dagmatis ATCC 43325]
          Length = 771

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 19/195 (9%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           +   +    +   +        M     ++ L      P    +    ++I        +
Sbjct: 532 TREQLKKVPRLGPKAFEQCAGFMRIAEGKNPLDASGVHPEAYPV---VEKILQATEQSIQ 588

Query: 573 VI---RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVP 617
            +      V Q  AK  IDD   +        E+E      R                  
Sbjct: 589 DLMGNASAVRQLDAKKFIDDQFGLPTVQDIFKELEKPGRDPRGEFKTATFMDGVEEISDL 648

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ 
Sbjct: 649 KAGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVLEV 708

Query: 678 D-DRGKIKLSMKVVD 691
           D  R +I L+M++ +
Sbjct: 709 DVPRKRIALTMRLEE 723


>gi|260770787|ref|ZP_05879716.1| transcription accessory protein [Vibrio furnissii CIP 102972]
 gi|260614024|gb|EEX39214.1| transcription accessory protein [Vibrio furnissii CIP 102972]
          Length = 769

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E+  + +G V  V +FGAFV     +DGLVHIS L+   V+   DVVK GD V 
Sbjct: 643 NEVSDLEIGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPRDVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIALSMRLNDEP 725


>gi|113461634|ref|YP_719703.1| transcription accessory protein [Haemophilus somnus 129PT]
 gi|112823677|gb|ABI25766.1| transcription accessory protein, RNA-binding protein containing S1
           domain [Haemophilus somnus 129PT]
          Length = 767

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+L+ 
Sbjct: 649 KAGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVENPHEVVKTGDIVKVKVLEV 708

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M+ +D+N  K
Sbjct: 709 DVARKRIGLTMR-LDENQPK 727


>gi|251809814|ref|ZP_04824287.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875438|ref|ZP_06284310.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|251806682|gb|EES59339.1| S1 family RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295795|gb|EFA88317.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
          Length = 133

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG++  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|163848394|ref|YP_001636438.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526319|ref|YP_002570790.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669683|gb|ABY36049.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450198|gb|ACM54464.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 391

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + +D +    + S   A  E  +     +    +   +  G+V ++ +FGAF+
Sbjct: 172 QEIPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQPGDVLVGRVNQLTNFGAFI 231

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              GA DGL HIS+LS +RV    +V++ G  V V +++ D +R +I LS++ +  N  +
Sbjct: 232 DLGGA-DGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQNNPWE 290

Query: 697 PI 698
            I
Sbjct: 291 TI 292



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I     + ++  G V  V  FGAFV    A +GL+H S+L  +  A+  D+++ G 
Sbjct: 288 PWETIDQRYTLGQLVTGPVTNVTPFGAFVQVEEAVEGLIHASELDADPQAQPRDILQPGQ 347

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V  +++  D  R ++ LS++ + +N  +P
Sbjct: 348 IVTARVISLDRQRQRMGLSLRRIGENENEP 377



 Score = 41.1 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH---ISQLSTERVAKTSDVVKE 666
                  P+  ++ +G ++ + + G  V     R+G++    + Q+  + +      +K 
Sbjct: 23  DEYDYARPQRGELREGLIMHIEESGVLVSIGTKREGIIPAQDLRQMGEDFINS----LKV 78

Query: 667 GDTVWVKLLD---FDDRGKIKLSMKVVDQN 693
           GDTV V + +    D    + LSM  V ++
Sbjct: 79  GDTVQVYVQEPENRDGDLILSLSMVQVAKD 108


>gi|329723961|gb|EGG60486.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU144]
 gi|329733042|gb|EGG69381.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU028]
          Length = 133

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|302655083|ref|XP_003019336.1| hypothetical protein TRV_06617 [Trichophyton verrucosum HKI 0517]
 gi|291183052|gb|EFE38691.1| hypothetical protein TRV_06617 [Trichophyton verrucosum HKI 0517]
          Length = 1210

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 19/124 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD     AS               + D P + KIY G+V  + DFG FV+ 
Sbjct: 219 RSGRNYNYDDDFKRPPAS--------------ELDDRPILFKIYDGRVTGIKDFGVFVNL 264

Query: 640 CGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G R   DGLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQDS-RIGLSMKEVDQVSG 323

Query: 696 KPIV 699
             + 
Sbjct: 324 HDLA 327


>gi|240146571|ref|ZP_04745172.1| protein YhgF [Roseburia intestinalis L1-82]
 gi|257201302|gb|EEU99586.1| protein YhgF [Roseburia intestinalis L1-82]
 gi|291540980|emb|CBL14091.1| Transcriptional accessory protein [Roseburia intestinalis XB6B4]
          Length = 752

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGA-KVNIDD--DGTVKIASSSLAEIEAAREMIR-SITD 615
            ++  + I       + + E+ G  ++ + D      K A     ++             
Sbjct: 616 KERRLDGISKKISNYKKLAEELGVGEITLQDIVKELEKPARDPREDMPKPILRSDVLEMK 675

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   I KG V  V+DFGAFV     +DGLVHISQ+S   +    +VV  GD V VK+L
Sbjct: 676 DLKPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKVL 735

Query: 676 DFD-DRGKIKLSMK 688
           D D  + +I L+MK
Sbjct: 736 DVDLKKQRIALTMK 749


>gi|221236638|ref|YP_002519075.1| 30S ribosomal protein S1 [Caulobacter crescentus NA1000]
 gi|220965811|gb|ACL97167.1| SSU ribosomal protein S1P [Caulobacter crescentus NA1000]
          Length = 569

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 28/259 (10%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDF------KVAGTDSGITAMQMDMKIGGISENI 516
           +MG     +  ++   + G E     +D       +V   + G+          G +  +
Sbjct: 21  SMGGRDFAEGTVVKGKVVGIEKDFAIIDVGLKTEGRVQLKEFGVDENGKATVKAGDTVEV 80

Query: 517 MVMALQQAK---------RGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIP------- 559
            +  L+ A            R      +  V + +   +G    RV+    +        
Sbjct: 81  FLERLENAMGEAVISREKAKREEAWTRLEGVYARNEPVMGAIVGRVKGGFTVDLGGASAF 140

Query: 560 -PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP 617
            P    ++  +         EQ  A + +D   G + ++  ++ E   A +    ++ + 
Sbjct: 141 LPGSQVDIRPVRDVGPLMGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVSQLQ 200

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  + D+GAFV   G  DGL+H++ +S +RV   S V+  GDTV V+++  
Sbjct: 201 EG-EIREGVVKNITDYGAFVDL-GGIDGLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVKI 258

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           + D  +I L MK +  +  
Sbjct: 259 NPDTQRISLGMKQLQSDPW 277



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A      +  +   V    +G+V    +FG FV      DG+VH+S +       +   
Sbjct: 358 QALANPWEAFLEAHPVGSTVEGEVKNATEFGLFVGLDNDIDGMVHLSDIDWSVPGEEAMA 417

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             K+GD V  K+LD D ++ +I L +K +  + 
Sbjct: 418 RYKKGDMVKAKVLDVDVEKERISLGIKQLAGDP 450



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 275 DPWDGVEAKYPVGAKFTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + ++ L +K    N  +
Sbjct: 335 SQEVDVVVLDVDPSKRRVSLGLKQALANPWE 365



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           F          +  S LS +R  +  +    GD V  ++ + D    ++ LS+K ++   
Sbjct: 478 FGEDDAPMTAFIRKSDLSRDRQEQRPERFAVGDRVDAQITNVDKAARRVSLSIKSLEMAE 537

Query: 695 GKPIV 699
            K  +
Sbjct: 538 EKEAI 542


>gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
 gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
          Length = 391

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           E+  ++V   D     +  S    +EAAR+  RS   D  +     KG V  ++DFGAFV
Sbjct: 165 ERIESRVIEMDRNRNNVVLSRRVVLEAARKAERSEILDKLKPGMKLKGTVSSIVDFGAFV 224

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGL+HIS+LS   V + S+VVK G  V V++LD D +R +I L +K   ++  +
Sbjct: 225 DL-GGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTEDPWR 283

Query: 697 PIV 699
            ++
Sbjct: 284 ALI 286



 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R++     +  I +G+V K++ FGAFV      +GLVHIS++S + V   + V K G
Sbjct: 280 DPWRALIKKYPIGAIIEGKVTKLVTFGAFVDLGDGVEGLVHISEMSKQHVDAPAQVCKVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           DTV VK+++ D +R +I LSMK   +  G+ 
Sbjct: 340 DTVQVKVMEVDLERRRISLSMKAAAETLGQD 370



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      +      +G++   +L+  +     D+V  GDT+   +L   D 
Sbjct: 35  DLVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDLVSLGDTIEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD-QNTGKPI 698
            G++ LS K  + +   K +
Sbjct: 95  EGRLILSKKRAEYERAWKAV 114


>gi|296129804|ref|YP_003637054.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
          Length = 492

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++  G V  +++FGAFV
Sbjct: 170 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDFDRERVSLSLKATQEDPWQ 288



 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V+VK++D D +R +I LS+K  ++
Sbjct: 345 DDVFVKVIDIDLERRRISLSLKQANE 370



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +      +VVK GD V   +L   D 
Sbjct: 40  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|239828183|ref|YP_002950807.1| general stress protein 13 [Geobacillus sp. WCH70]
 gi|239808476|gb|ACS25541.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 121

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I KG+V  +  +G FV       GLVHIS++S E V    D V  GD + VK+L  
Sbjct: 5   EVGSIVKGKVTGIQPYGVFVELDEETQGLVHISEISHEFVKNIKDYVNVGDEIIVKVLSI 64

Query: 678 DDR-GKIKLSMKVVDQNTGK 696
           D +  ++ LSM+ V++  GK
Sbjct: 65  DPQTKRVSLSMRAVEERQGK 84


>gi|27469193|ref|NP_765830.1| hypothetical protein SE2275 [Staphylococcus epidermidis ATCC 12228]
 gi|57866061|ref|YP_187742.1| hypothetical protein SERP0146 [Staphylococcus epidermidis RP62A]
 gi|293366150|ref|ZP_06612837.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316742|gb|AAO05917.1|AE016751_212 polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636719|gb|AAW53507.1| general stress protein 13 [Staphylococcus epidermidis RP62A]
 gi|291319744|gb|EFE60103.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737883|gb|EGG74111.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU045]
          Length = 133

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG++  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       KP
Sbjct: 64  ADDGKISLSIKKAKDRPRKP 83


>gi|296269654|ref|YP_003652286.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296092441|gb|ADG88393.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
          Length = 784

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 19/154 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIE------------ 604
           +R ++   G  IR ++  TG          +DD   +   +  L E+E            
Sbjct: 581 VRRILEATGMGIRSLIGNTGVLRSLDPARFVDDRFGLPTVTDILKELEKPGRDPRPTFTT 640

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA +      +  +   + +G V  V  FGAFV     +DGLVH+S ++   V    +VV
Sbjct: 641 AAFKEGVETIEDLKPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMADRFVKDPREVV 700

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K GD V VK+LD D  R +I L++++ D+   +P
Sbjct: 701 KPGDIVRVKVLDVDLARKRISLTLRLDDEAARRP 734


>gi|291460381|ref|ZP_06599771.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416948|gb|EFE90667.1| ribosomal protein S1 [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 374

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             +         +I +G+V ++ DFGAF+      D L+H+SQ+S E V K SDV+  G 
Sbjct: 263 PWKDADTKYAAGQIVRGRVARMTDFGAFIELDKGIDALLHVSQISREHVNKPSDVLSVGQ 322

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            +  K++D D +  KI LSMKV+    G+
Sbjct: 323 EIEAKVVDLDVNNHKISLSMKVLLPEEGR 351



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 15/224 (6%)

Query: 477 SDISGDEDHLGHMDFKVAGTDSG---ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            D++   +    ++ KV   + G   +     D      SE  +  A ++       ++ 
Sbjct: 55  LDLTTVVNIGDEIECKVKKVNDGEGQVILSHRDALQSKASEE-LRKAFEEGAVLTGRVIQ 113

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
            +   L+        F P      +     R++    G+ I+ ++ +   +         
Sbjct: 114 VVKGGLNVEVNGARVFVPASL---VSDSFERDLNKYQGQDIQFVITEFNPQ------KRR 164

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            I       +   +E    +        +  G V  + DFGAF+   GA DGL+HIS++S
Sbjct: 165 VIGDRKQIMLALKKEQHDKLFAELREGDVRTGVVKNLTDFGAFIDLGGA-DGLLHISEMS 223

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             R+     + K G  V V + + +   +I L+ K  D+N  K 
Sbjct: 224 WGRIENPKKLFKPGQEVKVLVKEINGE-RIALTRKFPDENPWKD 266



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I  G+V+ V      ++     DG++  S  ST+     + VV  G
Sbjct: 5   QMLEGSLKSIHAGEIVTGKVISVKPDEIALNIGYKSDGILTRSDYSTDNSLDLTTVVNIG 64

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           D +  K+    D  G++ LS +   Q+
Sbjct: 65  DEIECKVKKVNDGEGQVILSHRDALQS 91


>gi|326474036|gb|EGD98045.1| ATP-dependent RNA helicase DHX8 [Trichophyton tonsurans CBS 112818]
          Length = 1214

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 19/124 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD                R  +  + D P + KIY G+V  + DFG FV+ 
Sbjct: 219 RSGRNYNYDDDFK--------------RPPVSELDDRPILFKIYDGRVTGIKDFGVFVNL 264

Query: 640 CGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G R   DGLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQDS-RIGLSMKEVDQVSG 323

Query: 696 KPIV 699
             + 
Sbjct: 324 HDLA 327


>gi|311277659|ref|YP_003939890.1| Tex-like protein protein [Enterobacter cloacae SCF1]
 gi|308746854|gb|ADO46606.1| Tex-like protein protein [Enterobacter cloacae SCF1]
          Length = 777

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|295691411|ref|YP_003595104.1| 30S ribosomal protein S1 [Caulobacter segnis ATCC 21756]
 gi|295433314|gb|ADG12486.1| ribosomal protein S1 [Caulobacter segnis ATCC 21756]
          Length = 569

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 28/259 (10%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDF------KVAGTDSGITAMQMDMKIGGISENI 516
           +MG     +  ++   + G E     +D       +V   + G+          G +  +
Sbjct: 21  SMGGRDFAEGTVVKGKVVGIEKDFAIIDVGLKTEGRVQLKEFGVDEAGKPTVKAGDTVEV 80

Query: 517 MVMALQQAK---------RGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIP------- 559
            +  L+ A            R      +  V + +   +G    RV+    +        
Sbjct: 81  FLERLENAMGEAVISREKAKREEAWTRLEGVYARNEPVMGAIVGRVKGGFTVDLGGASAF 140

Query: 560 -PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP 617
            P    ++  +         EQ  A + +D   G + ++  ++ E   A +    ++ + 
Sbjct: 141 LPGSQVDIRPVRDVGPLMGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVSQLQ 200

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  + D+GAFV   G  DGL+H++ +S +RV   S V+  GDTV V+++  
Sbjct: 201 EG-EIREGVVKNITDYGAFVDL-GGIDGLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVKI 258

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           + D  +I L MK +  +  
Sbjct: 259 NPDTQRISLGMKQLQSDPW 277



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A      +  +   V    +G+V    +FG FV      DG+VH+S +       +   
Sbjct: 358 QALANPWEAFLEAHPVGSTVEGEVKNATEFGLFVGLDNDIDGMVHLSDIDWSVPGEEAMA 417

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             K+GD V  K+LD D ++ +I L +K +  + 
Sbjct: 418 RYKKGDVVKAKVLDVDVEKERISLGIKQLAGDP 450



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 275 DPWDGVEAKYPVGAKFTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + ++ L +K    N  +
Sbjct: 335 SQEVDVVVLDVDPSKRRVSLGLKQALANPWE 365


>gi|242012890|ref|XP_002427158.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative
           [Pediculus humanus corporis]
 gi|212511441|gb|EEB14420.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative
           [Pediculus humanus corporis]
          Length = 1236

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWV 672
           PEV KIY G++  ++ FG FV     R   +GLVHISQL  E R+   +DVV  G  V V
Sbjct: 278 PEVGKIYNGKIANIVPFGCFVQLENLRKRWEGLVHISQLRREGRITTVADVVSRGQKVKV 337

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K+L    + K+ LS+K VDQ+TGK +
Sbjct: 338 KVLSVTGQ-KVSLSIKDVDQDTGKDL 362


>gi|49474915|ref|YP_032956.1| 30S ribosomal protein S1 [Bartonella henselae str. Houston-1]
 gi|49237720|emb|CAF26909.1| 30S ribosomal protein S1 [Bartonella henselae str. Houston-1]
          Length = 566

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    I  E     + +R+    F+       +  D     +      IR I +
Sbjct: 91  SREKARREESWIRLEEK-FNAGARVDGVIFSQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QT-------GAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            +         ++   D     I  S    +E +R   RS      E N+I +G V  + 
Sbjct: 150 VSPLMHNSQSFEILKMDRRRGNIVVSRRTVLEESRAEQRSEIVQNLEENQIVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G T+ V+++  + D  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTIKVQIIRINQDTHRISLGMKQL 268

Query: 691 DQNTGKPI 698
           + +  + I
Sbjct: 269 ESDPWESI 276



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI+    V K   G V  + D+G FV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWESISARYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K   +N  
Sbjct: 331 SQEVEVVILEIDPSKRRISLGLKQTFENPW 360



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLESDPWESISARYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     +  +      I                       +  +   VN  
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVEVVILEIDPSKRRISLGLKQTFENPWVAFANKFPVNSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  D   +GD V   +LD D ++
Sbjct: 373 IEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDVDIEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 41.8 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       +  +  + L+ +R  +  +    G  V  ++  FD +
Sbjct: 461 VVTCEVTAVNDNGIDVKLTDHNLETTIRRTDLARDRDEQRPERFSIGQRVDARITAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + + +S+K ++    K  V
Sbjct: 521 TRKLSVSIKALEIAEEKEAV 540


>gi|332982232|ref|YP_004463673.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
           50-1 BON]
 gi|332699910|gb|AEE96851.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
           50-1 BON]
          Length = 718

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      D  +V  I +G+VV +  FGAFV      +GLVHISQ++ +R+ K  DV+K G
Sbjct: 586 QPWDYAMDKYKVGDIVRGKVVSITSFGAFVELEPGLEGLVHISQVANKRINKVEDVLKVG 645

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V VK++D   +  +I LS+K    ++
Sbjct: 646 DEVQVKIMDVRPEEHRISLSIKEAQGDS 673



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G+V  V DFGAFV   G  DGL+HI  LS  R+   S+VVK GDTV V +L  D +  K
Sbjct: 517 TGKVKNVTDFGAFVDI-GGVDGLIHIGDLSWGRIKHPSEVVKPGDTVDVIVLSADKENKK 575

Query: 683 IKLSMKVVDQNTG 695
           + L +K +     
Sbjct: 576 LSLGLKQLQPQPW 588



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 14/237 (5%)

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           L+   ++  I + I            ++A   + +  +         +  +  +  +   
Sbjct: 176 LLPKVNELQIFNTICYATSQRQEEALQIAKLSTAVIVIGGRNSSN--TRKLYEICCKVCD 233

Query: 526 RGRLHI-LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           R  L    +E+  +  +    +G          I  + I  +  +     + I E     
Sbjct: 234 RAFLIESADEIDNLSIKPDDVVGITAGASTPDGIIEEVITKMEELNKDAQQNIEEHVDEH 293

Query: 585 VNI--DDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQVVKVMDFGA 635
                 ++       S  A+ +  R       + +        V ++  G+V  V D   
Sbjct: 294 PEQAPVEETVNDAGVSHGADNDNGRSDEVDFAKGLEETLVTYHVGQMVSGKVASVSDSEI 353

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW--VKLLDFDDRGKIKLSMKVV 690
            V   G +DG++   ++  +     S+V    D +   VK    ++   + LS K +
Sbjct: 354 IVSLGGKQDGVIPREEMGLDEGVSPSEVFHIDDDIEAQVKKTARNEEDNLILSRKPL 410


>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
           carolinensis]
          Length = 223

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 86/237 (36%), Gaps = 17/237 (7%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M  ++ + D  D  ++R I  + GLL R  GS+ +++GDT  +  V  G  E        
Sbjct: 1   METEQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGV-YGPSEV------- 52

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                      Y+          ++G P   E    ++ ++    V+  T     ++ IV
Sbjct: 53  -----KVSKEIYDKATLEVMLRPKVGLPGVYERSREQMIKKTCEAVVLGTLHPRSSITIV 107

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            ++    GS   + +  + + LMDAG+P+     G+   L  DG +F +      +++  
Sbjct: 108 LQVITDAGSLLASCLNAACMGLMDAGLPMGSLFCGVTCALDADG-NFTLDPTAKQEKEAQ 166

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
             + F +   +  +    M       S   +   +  ++R    I            
Sbjct: 167 TVLTFAIDSIEKKVLMSSMKGTC---SVEQLQQCVAASQRAADTIFQFYRDSACRKY 220



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 78/216 (36%), Gaps = 23/216 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +  E G ++R  DG+     G+T VLA V     +   K+  D   L V  + +    
Sbjct: 17  RRIVCEQGLLSR-PDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKVG-- 73

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
             +PG Y R        E +I +  +  +        ++   +++ V+      S     
Sbjct: 74  --LPGVYERS------REQMIKKTCEAVVLGTLH--PRSSITIVLQVIT--DAGSLLASC 121

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           + AA   LM +GLP      G       +G + L+P   ++   Q  L   +   +  VL
Sbjct: 122 LNAACMGLMDAGLPMGSLFCGVTCALDADGNFTLDPTAKQEKEAQTVLTFAIDSIEKKVL 181

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           M  ++    S + +   +         + +     A
Sbjct: 182 MSSMKGT-CSVEQLQQCVAASQRAADTIFQFYRDSA 216


>gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
 gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
          Length = 528

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 205 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFV 264

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++  +
Sbjct: 265 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWR 323



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 320 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 379

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 380 DDALVKVIDIDLERRRISLSLKQANED 406



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 75  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 134

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 135 EGRLILSKKRAQ 146


>gi|332973007|gb|EGK10946.1| 30S ribosomal protein S1 [Psychrobacter sp. 1501(2011)]
          Length = 560

 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 91/213 (42%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +  +      G T +  +      + N +    +  +  +  I +++    +     +
Sbjct: 69  VDVVVEAVDNGMGQTLLSREKAKRVETWNALEKLFEGDEIVKGIISSKVKGGFTVDIGSV 128

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    IR+   + GK +   + +   K N      V ++  ++ E E +
Sbjct: 129 RAFLPGSL---VDVRPIRDTTHLEGKELEFKIIKLDQKRN-----NVVVSRKAVMEAENS 180

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E  ++ +G V  + D+GAFV   G  DGL+HI+ ++  R+   S+VV+ 
Sbjct: 181 AEREELLNKLEEGIEV-EGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEV 238

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  + VK+L FD +R ++ L +K +  +    +
Sbjct: 239 GQDLKVKVLKFDRERNRVSLGLKQLGTDPWDNV 271



 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +++    V  I K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNVSGTYPVGSIVKARVTNLTDYGCFAEISDGIEGLVHVSEMDHTNKNIHPSKVVQI 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +LD D+ R +I L +K    N  + 
Sbjct: 326 GDEVDVMILDIDEERRRISLGIKQTLPNPWEE 357



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V +V   GA +      +G +  S++  ++V   +  + EGDTV  K++  D + 
Sbjct: 454 IVTGTVKEVDAKGATITLADEVEGYLRASEIQRDKVEDATKHLNEGDTVEAKIISVDRKS 513

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D+   +
Sbjct: 514 RGISLSIKAKDEAEER 529



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +   G +V   I       ++ID++                           
Sbjct: 317 IHPSKVVQI---GDEVDVMI-------LDIDEERRRISLGIKQTLPN----PWEEFDKKF 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +      G +  + DFG F+   G  DGLVH+S +S      +      +GDTV   +L 
Sbjct: 363 DRGDKLTGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEAGEEAIRNYNKGDTVEAMVLS 422

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +  +I L +K +  + 
Sbjct: 423 VDAEANRISLGIKQLSSDP 441


>gi|304315782|ref|YP_003850927.1| RNA binding S1 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777284|gb|ADL67843.1| RNA binding S1 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 140

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 45/77 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V+ + DFGAFV     + GLVHIS+++   V   ++ +KE D V VK+L  
Sbjct: 4   QVGEVVEGTVLNITDFGAFVQLPEGKTGLVHISEVANTYVKDINEFLKENDKVKVKILSM 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D  G+I LS+K      
Sbjct: 64  DKGGRISLSIKKALPKP 80


>gi|327275337|ref|XP_003222430.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 2 [Anolis
           carolinensis]
          Length = 1180

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DG 645
           D    +  +    E    + + R   + P +  IY G+V  +M FG FV   G R   +G
Sbjct: 195 DHKEREKPAEKANERWRDKHVDRPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEG 254

Query: 646 LVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           LVHIS+L  E RVA  +DVV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 255 LVHISELRREGRVANVADVVSKGQRVKVKVLSFTGS-KTSLSMKDVDQDTGEDL 307


>gi|317054824|ref|YP_004103291.1| RNA-binding S1 domain-containing protein [Ruminococcus albus 7]
 gi|315447093|gb|ADU20657.1| RNA binding S1 domain protein [Ruminococcus albus 7]
          Length = 172

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 47/82 (57%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV KIY+G+V  +  FGAFV       G+VHIS+++   V++  D ++EG TV VK+
Sbjct: 1   MQLEVGKIYEGKVTGITKFGAFVELDKDTTGMVHISEVANTFVSEIKDHLQEGQTVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
           L   + GKI LS+K       K
Sbjct: 61  LSMGEDGKISLSIKKAQPAPPK 82


>gi|262281983|ref|ZP_06059752.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
 gi|262262437|gb|EEY81134.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
          Length = 75

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 4  VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY 63
              +  +AGR L +ETG++A+Q++G+ +  YGE+ VL      + +  G DFFPL VNY
Sbjct: 3  KQVFKTVFAGRELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATG-DFFPLQVNY 61

Query: 64 QERTYAVGKIPGGY 77
          + +     +IP  +
Sbjct: 62 EGKNVCGWEIPWWF 75


>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 262

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR     R    Q G      GS+    G T+ IV V  G RE ++   ++  +  
Sbjct: 39  PRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSV-FGPRESKK---AMLYSDT 94

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                  ++   ATG   +          +  +  +A+   +        T+ + + + E
Sbjct: 95  GRLNCSVSYTTFATGIRGQGLENK----EYSGMLHKALEGAVMLHTFPKTTVDVFALVLE 150

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S GS     +  +SLAL DAG+ +   V  +++  +       ++ D + DE+       
Sbjct: 151 SGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKN----VIIDPTSDEEAWQDGGL 206

Query: 492 KVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            V+       IT +      G  ++  +  A++        +   + + L + 
Sbjct: 207 MVSYMPARKEITQL---TLTGEWTDGKITNAVELYMDACSKLCEILRERLKDP 256



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 75/200 (37%), Gaps = 16/200 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G+T V+ +V   R  K      D   L  +    T+A G    G   +E  
Sbjct: 62  ASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCSVSYTTFATGIRGQGLENKE-- 119

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P ++S   AS AL  +G+
Sbjct: 120 ---YSGMLHKALEGAV--MLHTFPKTTVDVFALVLESGGSDLPIIISC--ASLALADAGI 172

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V    V  +    +++P  DE+    G L +         +       + ++  +
Sbjct: 173 MMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGL-MVSYMPARKEITQLTLTGEWTDGKI 231

Query: 201 LDAIIFGHNECKPVIEAISK 220
            +A+    + C  + E + +
Sbjct: 232 TNAVELYMDACSKLCEILRE 251


>gi|323705558|ref|ZP_08117132.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535035|gb|EGB24812.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 140

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 45/77 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V+ + DFGAFV     + GLVHIS+++   V   ++ +KE D V VK+L  
Sbjct: 4   QVGEVVEGTVLNITDFGAFVQLPEGKTGLVHISEVANTYVKDINEFLKENDKVKVKILSM 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D  G+I LS+K      
Sbjct: 64  DKGGRISLSIKKALPKP 80


>gi|312068671|ref|XP_003137323.1| hypothetical protein LOAG_01737 [Loa loa]
 gi|307767517|gb|EFO26751.1| hypothetical protein LOAG_01737 [Loa loa]
          Length = 693

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 4/92 (4%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKE 666
            R ++  P V  IY G+V+ +  FGAF+   G R   +GL+HISQ+  +RV   SDV+  
Sbjct: 213 RRRMSLAPIVGHIYNGRVISIQSFGAFIQLEGLRQRFEGLLHISQIRQDRVNAVSDVLNR 272

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              V VK++ F + GKI LSMK VDQ TG+ +
Sbjct: 273 NQKVKVKVIKF-ELGKIGLSMKEVDQETGQDL 303


>gi|312863902|ref|ZP_07724140.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396]
 gi|311101438|gb|EFQ59643.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396]
          Length = 400

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ + D  ++ LS+K +++   
Sbjct: 328 DVTVKVLEVNADAERVSLSIKALEERPA 355



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+  +D      I S        A E  + +    EV  I  G+V ++  F
Sbjct: 148 QFVGQEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|228478187|ref|ZP_04062795.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126]
 gi|228249866|gb|EEK09136.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126]
          Length = 400

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ + D  ++ LS+K +++   
Sbjct: 328 DVTVKVLEVNADAERVSLSIKALEERPA 355



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+  +D      I S        A E  + +    EV  I  G+V ++  F
Sbjct: 148 QFVGQEFDAKIKEVDPAENRFILSRREVVEAEAAEARKEVFSKLEVGSIVTGKVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|15902808|ref|NP_358358.1| 30S ribosomal protein S1 [Streptococcus pneumoniae R6]
 gi|116515525|ref|YP_816245.1| 30S ribosomal protein S1 [Streptococcus pneumoniae D39]
 gi|148984592|ref|ZP_01817860.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71]
 gi|148988281|ref|ZP_01819728.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73]
 gi|148993674|ref|ZP_01823121.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68]
 gi|148997062|ref|ZP_01824716.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70]
 gi|149007194|ref|ZP_01830858.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74]
 gi|149021729|ref|ZP_01835760.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72]
 gi|168485810|ref|ZP_02710318.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490295|ref|ZP_02714494.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           SP195]
 gi|168490951|ref|ZP_02715094.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC0288-04]
 gi|168493016|ref|ZP_02717159.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832652|ref|YP_001694315.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Hungary19A-6]
 gi|182683776|ref|YP_001835523.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14]
 gi|194397407|ref|YP_002037497.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54]
 gi|221231643|ref|YP_002510795.1| 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC 700669]
 gi|225854368|ref|YP_002735880.1| 30S ribosomal protein S1 [Streptococcus pneumoniae JJA]
 gi|225856529|ref|YP_002738040.1| 30S ribosomal protein S1 [Streptococcus pneumoniae P1031]
 gi|225858661|ref|YP_002740171.1| 30S ribosomal protein S1 [Streptococcus pneumoniae 70585]
 gi|225861244|ref|YP_002742753.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229157|ref|ZP_06962838.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255735|ref|ZP_06979321.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503131|ref|YP_003725071.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A]
 gi|307067459|ref|YP_003876425.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200]
 gi|15458359|gb|AAK99568.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae R6]
 gi|116076101|gb|ABJ53821.1| ribosomal protein S1 [Streptococcus pneumoniae D39]
 gi|147756762|gb|EDK63802.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70]
 gi|147761232|gb|EDK68199.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74]
 gi|147922983|gb|EDK74098.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71]
 gi|147925962|gb|EDK77036.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73]
 gi|147927754|gb|EDK78777.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68]
 gi|147930190|gb|EDK81176.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72]
 gi|168995154|gb|ACA35766.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182629110|gb|ACB90058.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14]
 gi|183571017|gb|EDT91545.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571355|gb|EDT91883.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           SP195]
 gi|183574635|gb|EDT95163.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC0288-04]
 gi|183576994|gb|EDT97522.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC3059-06]
 gi|194357074|gb|ACF55522.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54]
 gi|220674103|emb|CAR68621.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC
           700669]
 gi|225721143|gb|ACO16997.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           70585]
 gi|225723388|gb|ACO19241.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           JJA]
 gi|225725584|gb|ACO21436.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           P1031]
 gi|225728251|gb|ACO24102.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238726|gb|ADI69857.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A]
 gi|301793998|emb|CBW36396.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV104]
 gi|301799856|emb|CBW32430.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae OXC141]
 gi|306408996|gb|ADM84423.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200]
 gi|327390213|gb|EGE88556.1| hypothetical protein SPAR5_0822 [Streptococcus pneumoniae GA04375]
 gi|332073191|gb|EGI83670.1| 30S ribosomal protein S1 [Streptococcus pneumoniae GA17570]
 gi|332204867|gb|EGJ18932.1| hypothetical protein SPAR120_0834 [Streptococcus pneumoniae
           GA47901]
          Length = 400

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMKVVDQNTG 695
            + G++ LS+K       
Sbjct: 252 EEEGRVSLSLKATVPGPW 269


>gi|15900746|ref|NP_345350.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TIGR4]
 gi|111657643|ref|ZP_01408376.1| hypothetical protein SpneT_02001175 [Streptococcus pneumoniae
           TIGR4]
 gi|149004073|ref|ZP_01828879.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69]
 gi|168484699|ref|ZP_02709651.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1873-00]
 gi|168575518|ref|ZP_02721454.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016]
 gi|237650398|ref|ZP_04524650.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974]
 gi|237822248|ref|ZP_04598093.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974M2]
 gi|14972334|gb|AAK74990.1| ribosomal protein S1 [Streptococcus pneumoniae TIGR4]
 gi|147757974|gb|EDK64982.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69]
 gi|172042098|gb|EDT50144.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
           CDC1873-00]
 gi|183578463|gb|EDT98991.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016]
 gi|332202718|gb|EGJ16787.1| hypothetical protein SPAR69_0831 [Streptococcus pneumoniae GA41317]
 gi|332204016|gb|EGJ18083.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
          Length = 400

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAFV   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFVDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMKVVDQNTG 695
            + G++ LS+K       
Sbjct: 252 EEEGRVSLSLKATVPGPW 269


>gi|152966892|ref|YP_001362676.1| 30S ribosomal protein S1 [Kineococcus radiotolerans SRS30216]
 gi|151361409|gb|ABS04412.1| RNA binding S1 domain protein [Kineococcus radiotolerans SRS30216]
          Length = 505

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV   G
Sbjct: 175 AKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLTTLQKGQVRSGVVSSIVNFGAFVDL-G 233

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 234 GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 289



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +       + ++  G
Sbjct: 249 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHAIGQVVPG 303

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+    ++VK++D D +R +I 
Sbjct: 304 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEVPEQVVQVNSDIFVKVIDIDLERRRIS 363

Query: 685 LSMKVVDQN 693
           LS+K   ++
Sbjct: 364 LSLKQATES 372



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 41  DIVSGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVGVGDEVEALVLQKEDK 100

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 101 EGRLILSKKRAQ 112


>gi|307709199|ref|ZP_07645658.1| 40S ribosomal protein S1 [Streptococcus mitis SK564]
 gi|307620145|gb|EFN99262.1| 40S ribosomal protein S1 [Streptococcus mitis SK564]
          Length = 400

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|289167754|ref|YP_003446023.1| 30S ribosomal protein S1 [Streptococcus mitis B6]
 gi|288907321|emb|CBJ22158.1| 30S ribosomal protein S1 [Streptococcus mitis B6]
          Length = 400

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|217970449|ref|YP_002355683.1| RNA binding S1 domain protein [Thauera sp. MZ1T]
 gi|217507776|gb|ACK54787.1| RNA binding S1 domain protein [Thauera sp. MZ1T]
          Length = 795

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 24/176 (13%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           + S V  E+   +     RV         +R ++G GG +     E+       D+   +
Sbjct: 563 DASSVHPEAYPVVERILARVR------KSVRELMGNGGFLKSLKPEEF-----TDERFGL 611

Query: 594 KIASSSLAEIEAA----REMIRSITDV--------PEVNKIYKGQVVKVMDFGAFVHFCG 641
                 LAE+E      R   R+ T           E   + +G V  V +FGAFV    
Sbjct: 612 PTVQDILAELEKPGRDPRPEFRTATFREGVETLKDLEPGMLLEGVVTNVTNFGAFVDIGV 671

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            +DGLVHIS LS   V     VVK G  V VK+L+ D  R +I L+M++ D+ T K
Sbjct: 672 HQDGLVHISALSNTFVKDPHSVVKAGQVVKVKVLEVDIPRHRIALTMRLGDEVTAK 727


>gi|251796396|ref|YP_003011127.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
 gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 411

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +R  V++      ID +    I S+         +  + +    
Sbjct: 139 VERHFVEDFSDYKGRTLRVKVKE------IDRENNKVILSAKDVLDAEFEQNKQHVIAGL 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V ++  FGAFV   G  DGLVH+S+LS + VA   DVV EG  V VK+L  
Sbjct: 193 QVGAQLEGTVQRLTPFGAFVDI-GGIDGLVHVSELSWQHVAHPKDVVSEGQQVTVKVLKV 251

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           D   GKI LS+K       +
Sbjct: 252 DPAAGKISLSIKAAQPGPWE 271



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      S      V  I  G V +++ FGAFV      +GLVHISQ++   +A   +V+
Sbjct: 265 AQPGPWESAAGQFNVGDIVTGTVRRLVTFGAFVEIAPGVEGLVHISQIAHRHIATPFEVL 324

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           KEG  V  K+LDF+    ++ LS+K  ++   +P
Sbjct: 325 KEGQEVQAKVLDFNPAEKRVSLSIKETEEAPEQP 358



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              EI    +         +     KG ++K+ D  A+V      DG++ + +LS  ++ 
Sbjct: 1   MSEEINVQDQAAMDNFVSLKKGDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRELSAVQLD 60

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             +D V+ G  V +K++  DD + K+ LS +++D
Sbjct: 61  NANDAVQVGQEVELKVVSIDDEKEKLVLSKRLID 94


>gi|168182214|ref|ZP_02616878.1| RNA-binding protein [Clostridium botulinum Bf]
 gi|237793495|ref|YP_002861047.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182674704|gb|EDT86665.1| RNA-binding protein [Clostridium botulinum Bf]
 gi|229263673|gb|ACQ54706.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 718

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DQKRNRISLSMK 717


>gi|83649058|ref|YP_437493.1| transcriptional accessory protein [Hahella chejuensis KCTC 2396]
 gi|83637101|gb|ABC33068.1| Transcriptional accessory protein [Hahella chejuensis KCTC 2396]
          Length = 775

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   + +G V  V +FGAFV     +DG
Sbjct: 617 DILTELDKPGRDPRPEFKFAQYQEGVEDIKDLKPGMVLEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           LVHIS LS + V    +VVK GD V VK+++ D  R +I L+M++ D+
Sbjct: 677 LVHISALSHKFVKDPREVVKAGDIVKVKVIEVDAARKRIALTMRLDDE 724


>gi|167947479|ref|ZP_02534553.1| 30S ribosomal protein S1 [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 222

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             V ++  ++ E E + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+
Sbjct: 27  NNVVVSRRAVVEQEYSAEREKLLENLQEGQEL-KGVVKNLTDYGAFVDL-GGIDGLLHIT 84

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++ +RV   SDVV+ GD + VK+L FD +R ++ L +K +  +  
Sbjct: 85  DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLKQMGDDPW 130



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++ +      E  L+  +    ++ +          + +GG     
Sbjct: 22  LDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQELKGVVKNLTDYGAFVDLGGIDGLL 81

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNK 621
               +    V+     V I D+ TVK+               +   +   ++      + 
Sbjct: 82  HITDMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLKQMGDDPWVALARRYPEST 141

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
              G+V  + D+G FV      +GLVH+S++  ++    S
Sbjct: 142 RLFGKVTNIADYGCFVEIEEGVEGLVHVSEMDLDQQEHPS 181


>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
          Length = 246

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 10/242 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R   + +        GSS   +G+ + I +V  G +E    +
Sbjct: 5   EIYSPEGLRLDGRRWNELRRFESAINTHPHAADGSSYLEQGNNKVITLVK-GPKEP--TL 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S    Q+    +  N    +  E S+      RR +       R     +         
Sbjct: 62  KSQMDIQKAILKVTVNITKFSKFERSKSSHKNERRVLEMQTALVRTFEKNVMLHVYPRTL 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I   + + DG      + G SLAL+DAG+ +   V+GI++GL     D   L DI+  
Sbjct: 122 IDIEIHVLQQDGGIMGTLLNGISLALIDAGIAMYDYVSGISVGLY----DTTPLLDINSL 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +E+ +  +   V G    ++ +Q++ KI       ++            ++ +  +  +E
Sbjct: 178 EENAMSAVTLGVVGKSEKLSLLQIEDKIPLDRIENVLAIGIAGAHRIRDLMEQEIRAHAE 237

Query: 542 SR 543
            R
Sbjct: 238 KR 239



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 76/208 (36%), Gaps = 12/208 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSL----KDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G   V+  V   +      +       L V      ++  +      + E 
Sbjct: 36  ADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQKAILKVTVNITKFSKFERSKSSHKNER 95

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           R  E +  + R  ++++  +     +    + I+V+Q D      ++     S AL+ +G
Sbjct: 96  RVLEMQTALVRTFEKNV--MLHVYPRTLIDIEIHVLQQDGGIMGTLL--NGISLALIDAG 151

Query: 143 LPFEGPVVGAQVDYINGQYV--LNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVV 200
           +     V G  V   +   +  +N   +    ++ L V G  + + ++++E   +  D +
Sbjct: 152 IAMYDYVSGISVGLYDTTPLLDINSLEENAMSAVTLGVVGKSEKLSLLQIEDK-IPLDRI 210

Query: 201 LDAIIFGHNECKPVIEAIS-KLAKMCAK 227
            + +  G      + + +  ++     K
Sbjct: 211 ENVLAIGIAGAHRIRDLMEQEIRAHAEK 238


>gi|319406490|emb|CBI80131.1| 30S ribosomal protein S1 [Bartonella sp. 1-1C]
          Length = 566

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +V++ ++A+R    I  E     + +R++   F+       +  D     +      IR 
Sbjct: 88  IVLSREKARREESWIRLEEK-FNAGTRVEGIIFSQVKGGFTVDLDGAIAFLPRSQVDIRP 146

Query: 577 IVEQTGAKVNID-------DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVV 628
           I +      N         D     I  S  A +E +R   RS      E N+I +G V 
Sbjct: 147 IRDVAPLMHNAQLFEILKMDRRRGNIVVSRRAVLEESRAEQRSEIVQNLEENQIVEGIVK 206

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + D+GAFV   G  DGL+H++ ++  R+   S+V+  G T+ V+++  + D  +I L M
Sbjct: 207 NITDYGAFVDL-GGIDGLLHVTDMAWRRINHPSEVLTIGQTIKVQIIRINQDTHRISLGM 265

Query: 688 KVVDQNTGKPI 698
           K ++ +    I
Sbjct: 266 KQLENDPWDNI 276



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+ D           E +         T  P   KI  G V  + D+G FV      +
Sbjct: 252 IRINQDTHRISLGMKQLEND---PWDNINTKYPVGKKI-TGAVTNITDYGGFVEIEPGIE 307

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  ++      ++     V V +L+ D  + +I L +K   +N  
Sbjct: 308 GLIHVSEMSWTKKNIHPGKLLSISQEVEVVILEIDSSKRRISLGLKQTSENPW 360



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 94/250 (37%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S +  +   +K+  I          
Sbjct: 203 GIVKNITDYGAFVDLGGIDGLLHVTDMAWRRINHPSEVLTIGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ ++    +    P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLENDPWDNINTKYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K NI     + I+      I                 +     +  +   VN  
Sbjct: 313 SEMSWTKKNIHPGKLLSISQEVEVVILEIDSSKRRISLGLKQTSENPWVTFANKYPVNSK 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
             G++    +FG F+   G  DG+VH+S L   R   +  D+  +GDTV   +LD D ++
Sbjct: 373 ITGEIKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDIYNKGDTVQAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNK--IYKGQVVKVMD 632
           ++I + G    A     ++E  R          + +R      E+ K  I   +V+ + +
Sbjct: 412 IDIYNKGDTVQAVVLDVDVEKERISLGIKQLSSDKMREAAASGELRKGAIVTCEVIGINE 471

Query: 633 FGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVV 690
            G  V       +  +  + L+ +R  +  +    G  V  ++  FD + + + +S+K +
Sbjct: 472 SGVDVKLIEHDLEVTIRRTDLARDRDEQRPERFAIGQKVDAQVTAFDKKTRKLSVSIKAL 531

Query: 691 DQNTGKPIV 699
           +    K  V
Sbjct: 532 EIAEEKEAV 540


>gi|319403578|emb|CBI77160.1| 30S ribosomal protein S1 [Bartonella rochalimae ATCC BAA-1498]
          Length = 566

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +V++ ++A+R    I  E     + +R++   F+       +  D     +      IR 
Sbjct: 88  IVLSREKARREESWIRLEEK-FNAGTRVEGIIFSQVKGGFTVDLDGAVAFLPRSQVDIRP 146

Query: 577 IVEQTGAKVNID-------DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVV 628
           I +      N         D     I  S  A +E +R   RS      E N+I +G V 
Sbjct: 147 IRDVAPLMHNAQLFEILKMDRRRGNIVVSRRAVLEESRAEQRSEIVQNLEENQIVEGIVK 206

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + D+GAFV   G  DGL+H++ ++  R+   S+V+  G T+ V+++  + D  +I L M
Sbjct: 207 NITDYGAFVDL-GGIDGLLHVTDMAWRRINHPSEVLTIGQTIKVQIIRINQDTHRISLGM 265

Query: 688 KVVDQNTGKPI 698
           K ++ +    I
Sbjct: 266 KQLENDPWDNI 276



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+ D           E +         T  P   KI  G V  + D+G FV      +
Sbjct: 252 IRINQDTHRISLGMKQLEND---PWDNINTKYPVGKKI-TGAVTNITDYGGFVEIEPGIE 307

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  ++      ++     V V +L+ D  + +I L +K   +N  
Sbjct: 308 GLIHVSEMSWTKKNIHPGKLLSISQEVEVVILEIDSSKRRISLGLKQTSENPW 360



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 94/250 (37%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S +  +   +K+  I          
Sbjct: 203 GIVKNITDYGAFVDLGGIDGLLHVTDMAWRRINHPSEVLTIGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ ++    +    P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLENDPWDNINTKYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K NI     + I+      I                 +     +  +   VN  
Sbjct: 313 SEMSWTKKNIHPGKLLSISQEVEVVILEIDSSKRRISLGLKQTSENPWVAFANKYPVNSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
             G++    +FG F+   G  DG+VH+S L   R   +  D+  +GDTV   +LD D ++
Sbjct: 373 ITGEIKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDIYNKGDTVQAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNK--IYKGQVVKVMD 632
           ++I + G    A     ++E  R          + +R      E+ K      +V+ + +
Sbjct: 412 IDIYNKGDTVQAVVLDVDVEKERISLGIKQLSSDKMREAAASGELRKGATVTCEVIDINE 471

Query: 633 FGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVV 690
            G  V       +  +  + L+ +R  +  +    G  V  ++  FD + + + +S+K +
Sbjct: 472 NGVGVKLIEHDLEVTIRRTDLARDRDEQRPERFAIGQKVDAQITAFDKKNRKLSVSIKAL 531

Query: 691 DQNTGKPIV 699
           +    K  V
Sbjct: 532 EIAEEKEAV 540


>gi|160945617|ref|ZP_02092843.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443348|gb|EDP20353.1| hypothetical protein FAEPRAM212_03146 [Faecalibacterium prausnitzii
           M21/2]
          Length = 636

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +ID +          +E          + +   +   +   VV +  FGAFV      DG
Sbjct: 529 DIDTENHKVSLGYKKSEDN----PWEQLKNNYPIGSTFHAPVVSLTKFGAFVRILPGVDG 584

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS++S +RV K SD +K GD V VKLLD D D+ +I LSMK +  +  +
Sbjct: 585 LVHISEISNDRVEKVSDALKVGDMVDVKLLDVDFDKKRISLSMKALLNDDAE 636



 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G+  +             +  A +  +     +       +  +  
Sbjct: 350 DELDLIVEKVMDQDGVIQLSRKKLASRKGMEEIAKAAESGEVVEGDVTEFNKGGVVVNVK 409

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F PR +      +    ++G   +++  + E +G K+       V   +   AE  
Sbjct: 410 GVKVFVPRSQATMRRDEDYTALVGQHVQLV--VTECSGRKI-------VGSINKVTAEQN 460

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+          EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV
Sbjct: 461 KAK--REEFWANVEVGKTYTGVVKSLTSYGAFVDI-GGVDGLCHISELSWNRIKHPSEVV 517

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GDT+ V + D D +  K+ L  K  + N  + +
Sbjct: 518 SVGDTIEVYVKDIDTENHKVSLGYKKSEDNPWEQL 552



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++    +++     +     +  S         I KG V  +      V     + G
Sbjct: 268 SIIEEVLNSMSAEINDNMSFEEMLNASEEKRVHAGSIVKGIVTSISANEIQVDIGAKQTG 327

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV 690
            V +S+L+ +  AK  D+VK GD + + +    D  G I+LS K +
Sbjct: 328 FVKLSELTDDSSAKVEDLVKVGDELDLIVEKVMDQDGVIQLSRKKL 373


>gi|288553942|ref|YP_003425877.1| general stress protein 13 [Bacillus pseudofirmus OF4]
 gi|288545102|gb|ADC48985.1| general stress protein 13 putative RNA binding protein [Bacillus
           pseudofirmus OF4]
          Length = 140

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAFV     + GLVHIS+++   V   +DV+  GD V VK+++ 
Sbjct: 5   EVGSIVEGKVTGIKPFGAFVAIDEQKQGLVHISEVAHGFVKDINDVLSVGDEVKVKIMNV 64

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           ++  GKI LS++   +   +P
Sbjct: 65  EENSGKISLSIRATQEAPERP 85


>gi|228476209|ref|ZP_04060912.1| RNA binding S1 domain protein [Staphylococcus hominis SK119]
 gi|314937285|ref|ZP_07844627.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269694|gb|EEK11193.1| RNA binding S1 domain protein [Staphylococcus hominis SK119]
 gi|313654581|gb|EFS18331.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
          Length = 133

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            + GKI LS+K       +P
Sbjct: 64  AEDGKISLSIKKAKDRPRRP 83


>gi|89094331|ref|ZP_01167272.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Oceanospirillum sp.
           MED92]
 gi|89081390|gb|EAR60621.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Oceanospirillum sp.
           MED92]
          Length = 714

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 87/237 (36%), Gaps = 14/237 (5%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           ++G+  +     IL  ISG  D L             I++     K+  +       A  
Sbjct: 484 SVGVDLNSASQAILCRISGLNDTLATNIINYRNQVGKISSRNELKKVKRLGPKAFEQAAA 543

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG-----MGGKVIRGI 577
             +      L + S V  E+   +                I ++IG        +    I
Sbjct: 544 FLRIRDGKQLLDSSSVHPEAYSLVERIA------KQNKRSIASLIGDSVFLNSLRPADYI 597

Query: 578 VEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            +Q G     +I  +              A  +         +V    +G +  V +FGA
Sbjct: 598 SDQFGLYTVKDIICELDKPGRDPRPEFKTAKLQDGVETITDLQVGMRLEGTISNVTNFGA 657

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           FV     +DGLVHISQL+ + V    DVV  G  V V++L+ D+ R +I L+M+  D
Sbjct: 658 FVDLGVHQDGLVHISQLANKFVKDPHDVVSPGQIVTVRVLEVDEKRKRISLTMRTAD 714


>gi|125974456|ref|YP_001038366.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|281418982|ref|ZP_06250000.1| Tex-like protein-like protein [Clostridium thermocellum JW20]
 gi|125714681|gb|ABN53173.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|281407439|gb|EFB37699.1| Tex-like protein-like protein [Clostridium thermocellum JW20]
          Length = 718

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 13/133 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEV 619
           +++   IG+G   ++ I+++            +K       E+     +   +       
Sbjct: 597 EKVAREIGVGVPTLKDIIKEL-----------LKPGRDPRDELPKPMLLTDVLHLEDLRP 645

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I  G V  V DFGAFV     +DGLVHIS+LS + V    DVV  GD V V++LD D 
Sbjct: 646 GMILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRILDVDV 705

Query: 679 DRGKIKLSMKVVD 691
           +R +I +SMK V+
Sbjct: 706 ERKRISMSMKGVN 718


>gi|323970005|gb|EGB65280.1| tex protein containing protein [Escherichia coli TA007]
          Length = 815

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D   G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDVQPGE 727


>gi|293390073|ref|ZP_06634407.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950607|gb|EFE00726.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 548

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   +   P     +++G     +   V +   K N      V ++  ++ E E+
Sbjct: 127 VRAFLPGSLVDTRPVRDADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESES 178

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +++    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V 
Sbjct: 179 SQDREEVLANLSEGAEV-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVN 236

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            GD + VK+L FD DR ++ L +K + Q+    I 
Sbjct: 237 VGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIA 271



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +       ++   +I +   VN    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K    N  
Sbjct: 342 ISLGLKQCKPNPW 354



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 128/366 (34%), Gaps = 58/366 (15%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           DEQ   +  ++G  +  F +  +    FLP +  +   +            L  + +   
Sbjct: 103 DEQATVLGLVNGKVKGGFTVELSGVRAFLPGSLVDTRPVRDAD-------HLLGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     V    LA +  G  +         G VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESESSQDREEV----LANLSEGAEVK--------GTVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        I+  ++     + +   
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDKDRTRVSL 257

Query: 529 --LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               +  +    ++E+     + T +V  +      +  + G+ G V   + E      N
Sbjct: 258 GLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLV--HVSEMDWTNKN 315

Query: 587 IDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVM 631
           I     V +       +    E  R                  +         G++  + 
Sbjct: 316 IHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIKSIT 375

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DFG F+   G  DGLVH+S +S   V     V   K+GD V   +L  D  + +I L +K
Sbjct: 376 DFGIFIGLEGGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVKERISLGIK 434

Query: 689 VVDQNT 694
            ++++ 
Sbjct: 435 QLEEDP 440



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +   +VV+    GA V   G  +G +  + L+ E VA        G
Sbjct: 439 DPFNNFVAINKKGAVLNAKVVEADAKGAKVELDGGVEGYIRAADLTNEVVA--------G 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS++  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVRAKDQ 516


>gi|261868288|ref|YP_003256210.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413620|gb|ACX82991.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 548

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   +   P     +++G     +   V +   K N      V ++  ++ E E+
Sbjct: 127 VRAFLPGSLVDTRPVRDADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESES 178

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +++    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V 
Sbjct: 179 SQDREEVLANLSEGAEV-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVN 236

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            GD + VK+L FD DR ++ L +K + Q+    I 
Sbjct: 237 VGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIA 271



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +       ++   +I +   VN    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +R +
Sbjct: 282 GKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDVVEVMVLEIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K    N  
Sbjct: 342 ISLGLKQCKPNPW 354



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 128/366 (34%), Gaps = 58/366 (15%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           DEQ   +  ++G  +  F +  N    FLP +  +   +            L  + +   
Sbjct: 103 DEQATVLGLVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDAD-------HLLGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     V    LA +  G  +         G VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESESSQDREEV----LANLSEGAEVK--------GTVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +        I+  ++     + +   
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDKDRTRVSL 257

Query: 529 --LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               +  +    ++E+     + T +V  +      +  + G+ G V   + E      N
Sbjct: 258 GLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLV--HVSEMDWTNKN 315

Query: 587 IDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVVKVM 631
           I     V +       +    E  R                  +         G++  + 
Sbjct: 316 IHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIKSIT 375

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DFG F+   G  DGLVH+S +S   V     V   K+GD V   +L  D  + +I L +K
Sbjct: 376 DFGIFIGLEGGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVKERISLGIK 434

Query: 689 VVDQNT 694
            ++++ 
Sbjct: 435 QLEEDP 440



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +   +VV+    GA V   G  +G +  + L+ E VA        G
Sbjct: 439 DPFNNFVAINKKGAVLNAKVVEADAKGAKVELDGGVEGYIRAADLTNEVVA--------G 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D V  K    D + +I  LS++  DQ
Sbjct: 491 DVVEAKYTGVDRKARIVHLSVRAKDQ 516


>gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
 gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
          Length = 489

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I  Q   K+   D     +  S  A +E  +  +R+      +  ++  G V  +++FG
Sbjct: 165 YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVRTGVVSSIVNFG 224

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 225 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQED 283

Query: 694 TGK 696
             +
Sbjct: 284 PWQ 286



 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V++   E T   +++D D   V ++  +  E     +  ++     ++ +I  G
Sbjct: 246 IDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQTFARTHKIGQIVPG 300

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FG FV      +GLVH+S+L+T  +     V K GD ++VK++D D +R +I 
Sbjct: 301 KVTKLVPFGVFVRVEDGIEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRIS 360

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 361 LSLKQANE 368



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVKV      +      +G++   +LS +      + VK GD +   +L   D 
Sbjct: 38  DLVTGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVLQKEDK 97

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 98  EGRLLLSKKRAQ 109


>gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 489

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I  Q   K+   D     +  S  A +E  +  +R+      +  ++ KG V  +++FG
Sbjct: 166 YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVRKGVVSSIVNFG 225

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 226 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQED 284

Query: 694 TGK 696
             +
Sbjct: 285 PWQ 287



 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V++   E T   +++D D   V ++  +  E     +  ++     ++ +I  G
Sbjct: 247 IDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQTFARTHKIGQIVPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FG FV      +GLVH+S+L+T  V     V K GD ++VK++D D +R +I 
Sbjct: 302 KVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRIS 361

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 362 LSLKQANE 369



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVKV      +      +G++   +LS +        VK GD +   +L   D 
Sbjct: 39  DLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLLLSKKRAQ 110


>gi|330897209|gb|EGH28628.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 467

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  A    +  +  I  ++    +     +  F P      +    +R+   + GK + 
Sbjct: 3   VLEAAFAAEEVVKGVINGKVKGGFTVDVNGIRAFLPGSL---VDVRPVRDTTHLEGKELE 59

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             V +   K N      V ++  S+ E E + E    +  + E  ++ KG V  + D+GA
Sbjct: 60  FKVIKLDQKRN-----NVVVSRRSVLEAENSAEREALLESLQEGQQV-KGIVKNLTDYGA 113

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L +D +R ++ L +K + ++ 
Sbjct: 114 FVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDP 172

Query: 695 GKPI 698
              I
Sbjct: 173 WVAI 176



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 65  LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 124

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 125 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 184

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 185 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 244

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 245 RRRISLGIKQCKSNPWED 262



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 345 DPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 404

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    K  +
Sbjct: 405 EEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 437



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 222 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 267

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 268 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 326

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 327 SVDPERERISLGIKQLESDP 346


>gi|327275335|ref|XP_003222429.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Anolis
           carolinensis]
          Length = 1186

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DG 645
           D    +  +    E    + + R   + P +  IY G+V  +M FG FV   G R   +G
Sbjct: 201 DHKEREKPAEKANERWRDKHVDRPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEG 260

Query: 646 LVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           LVHIS+L  E RVA  +DVV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 261 LVHISELRREGRVANVADVVSKGQRVKVKVLSFTGS-KTSLSMKDVDQDTGEDL 313


>gi|295109047|emb|CBL23000.1| Transcriptional accessory protein [Ruminococcus obeum A2-162]
          Length = 719

 Score = 94.2 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   +G+G   +R IV++             K A     E+               + 
Sbjct: 596 KKLAEELGVGEPTLRDIVKELE-----------KPARDPRDEMPKPVLRTDVLDMKDLKE 644

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I KG V  V+DFGAFV     +DGLVHIS++S + +    + V  GD V V++L  D 
Sbjct: 645 GMILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSEKYIKHPLEAVSVGDVVDVRVLGVDM 704

Query: 679 DRGKIKLSMKVVDQ 692
            + +I LSMK + Q
Sbjct: 705 KKKRISLSMKGIKQ 718


>gi|316973788|gb|EFV57343.1| ATP-dependent RNA helicase DHX8 [Trichinella spiralis]
          Length = 1176

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            P V KIY G+V  + DFG FV   G     +GLVHISQ+  ERV   SDVV  G  V V
Sbjct: 203 TPTVGKIYDGRVNSLRDFGCFVELFGLRRHVEGLVHISQMKDERVNAVSDVVTRGQKVKV 262

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K+L      +  LSM+ VDQ TG+ +
Sbjct: 263 KVLA-SSGNRTSLSMREVDQETGEDL 287


>gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 397

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D D    + S   A     +     + +  E   +  G+V ++  FGAF+   GA D
Sbjct: 175 IEVDRDRNRLVLSERAAMQRWRQSQKERLLETLEPGAVVTGRVNQLTPFGAFIDLGGA-D 233

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL HIS+LS +RV    +V++ G  V V +L+ D DR +I LS++ +  +    I
Sbjct: 234 GLAHISELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLRRLQPDPWATI 288



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +I    ++ ++  G+V  +  FG FV      +GL+H S+L+     ++ D +++G
Sbjct: 283 DPWATIDQRYDLGQLIVGEVTNIAPFGVFVRVEEGVEGLIHASELTEN--GQSPDSLQQG 340

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
             V VK++  D  R ++ LS++ VD
Sbjct: 341 QQVQVKVISLDRQRQRLGLSLRRVD 365


>gi|332076140|gb|EGI86606.1| hypothetical protein SPAR68_0864 [Streptococcus pneumoniae GA41301]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMKVVDQNTG 695
            + G++ LS+K       
Sbjct: 252 EEEGRVSLSLKATVPGPW 269


>gi|146313452|ref|YP_001178526.1| RNA-binding S1 domain-containing protein [Enterobacter sp. 638]
 gi|145320328|gb|ABP62475.1| RNA binding S1 domain protein [Enterobacter sp. 638]
          Length = 776

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVQDPHTVVKAGDIVKVKVLEVDMP 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 712 RKRIALTMR-LDEQPGE 727


>gi|222152148|ref|YP_002561308.1| hypothetical protein MCCL_1905 [Macrococcus caseolyticus JCSC5402]
 gi|222121277|dbj|BAH18612.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 128

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  V +FGAFV     + GLVHIS+++   V   +D +K GD V VK+L  
Sbjct: 4   EVGSKLKGKVTGVKNFGAFVELPEGKSGLVHISEVADSYVENVADHLKVGDEVEVKVLTI 63

Query: 678 DDRGKIKLSMKVVDQNTGKPIV 699
            D GKI LS+K   +   KP+ 
Sbjct: 64  GDDGKISLSIKKAKERPKKPVA 85


>gi|194099852|ref|YP_002002989.1| hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945]
 gi|239997870|ref|ZP_04717794.1| hypothetical protein Ngon3_00055 [Neisseria gonorrhoeae 35/02]
 gi|240116753|ref|ZP_04730815.1| hypothetical protein NgonPID1_11046 [Neisseria gonorrhoeae PID18]
 gi|268593716|ref|ZP_06127883.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268602424|ref|ZP_06136591.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18]
 gi|193935142|gb|ACF30966.1| Hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945]
 gi|268547105|gb|EEZ42523.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268586555|gb|EEZ51231.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18]
 gi|317165320|gb|ADV08861.1| hypothetical protein NGTW08_1906 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 757

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    DVVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPRDVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|330812957|ref|XP_003291382.1| hypothetical protein DICPUDRAFT_82061 [Dictyostelium purpureum]
 gi|325078442|gb|EGC32093.1| hypothetical protein DICPUDRAFT_82061 [Dictyostelium purpureum]
          Length = 779

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVA--KTSD 662
           +  + +   P + KIY G+V  + D+G FV   G    RDGLVHISQ+ + RV     SD
Sbjct: 172 DRRKELDKEPVLYKIYNGKVSTINDYGCFVSLEGIQGRRDGLVHISQIQSGRVKLNHPSD 231

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            VK   +V VK+L      KI LSM+ VDQ +G+ +
Sbjct: 232 AVKRNQSVKVKVLSVAGS-KISLSMRDVDQESGRDL 266


>gi|319762303|ref|YP_004126240.1| tex-like protein [Alicycliphilus denitrificans BC]
 gi|317116864|gb|ADU99352.1| Tex-like protein [Alicycliphilus denitrificans BC]
          Length = 794

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ E   + +G V  V  FGAFV     +DGLVH+SQL+ + V+   +VVK G
Sbjct: 661 EGVEEITDLKEG-MVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVSDAREVVKTG 719

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D V VK+L+ D  RG+I LSMK +D    +
Sbjct: 720 DIVKVKVLEVDVARGRISLSMK-LDAAPAR 748


>gi|225870666|ref|YP_002746613.1| 30S ribosomal protein S1 [Streptococcus equi subsp. equi 4047]
 gi|225700070|emb|CAW94132.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp. equi
           4047]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+LD +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLDVNAADERVSLSIKALEERPAQ 356



 Score = 37.6 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++   +  + +  G  V F G R G +  S + T  V  T   V  G     K+ + D  
Sbjct: 108 EVVTVKGTRAVKGGLSVEFEGLR-GFIPASMIDTRFVRNTEKFV--GQEFDAKIKEVDAA 164

Query: 680 RGKIKLSMKVVDQNTGK 696
             +  LS + V +   K
Sbjct: 165 ENRFILSRREVVEEAAK 181


>gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 500

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 363 LSLKQANESFGAD 375



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|157676008|emb|CAP07845.1| putative transcriptional accessory protein [Neisseria sicca ATCC
           29256]
          Length = 757

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+ +G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPSG 716


>gi|260439486|ref|ZP_05793302.1| hypothetical protein NgonDG_00065 [Neisseria gonorrhoeae DGI2]
 gi|291042720|ref|ZP_06568461.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291013154|gb|EFE05120.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 757

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    DVVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPRDVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|185535577|gb|ACC77867.1| 30S ribosomal protein S1 [Staphylococcus xylosus]
          Length = 393

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +  G  G++++  VE+         +  V ++  ++  +E A +    +  + 
Sbjct: 138 ISTDFIEDFSGFEGQILKLKVEELDPA-----NNRVILSRKAVEALENAEKKDELLESLN 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  GD+V VK+   
Sbjct: 193 EG-DVIEGKVARLTNFGAFVDI-GGVDGLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSV 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K    +  + I
Sbjct: 251 DKDSERISLSIKDTLPSPFEAI 272



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I +    K+   D  + +I+ S    +        +I       ++ +G VV++ +FGAF
Sbjct: 239 IGDSVKVKIKSVDKDSERISLSIKDTLP---SPFEAIKGEINEGEVIEGTVVRLTNFGAF 295

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           V       GLVHIS++S   +    +V++ G+ V VK+L  D    +I LS+K    + 
Sbjct: 296 VEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPENERISLSIKATLPDE 354



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V ++ +    VH  G + +G++ ISQLST  +   SD VK 
Sbjct: 4   EFNESMINEIKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKV 63

Query: 667 GDTV-----WVKLLDFDDRGKIKLSMKVVD 691
           GD +      V+  + ++ G   LS + ++
Sbjct: 64  GDEIGAYVTKVEYDEENETGAYILSKRQLE 93


>gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN]
 gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
 gi|13432211|sp|P46836|RS1_MYCLE RecName: Full=30S ribosomal protein S1
 gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae]
 gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
          Length = 481

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++
Sbjct: 224 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 22/204 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I + I    ++  K     +L+  + +         EF  +++  AI    + +++  G 
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGA 224

Query: 572 KV-------IRGIVEQTGAKVN----IDDDGTVKIASSSLAEIEAAR----------EMI 610
            V       +  + E +   ++    +   G          +++  R          +  
Sbjct: 225 FVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPW 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  GD  
Sbjct: 285 RHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDA 344

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            VK++D D +R +I LS+K  +++
Sbjct: 345 MVKVIDIDLERRRISLSLKQANED 368



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|322376414|ref|ZP_08050907.1| ribosomal protein S1 [Streptococcus sp. M334]
 gi|321282221|gb|EFX59228.1| ribosomal protein S1 [Streptococcus sp. M334]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S               +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDAKENRFILSRREVVEATTAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|307544277|ref|YP_003896756.1| ribonuclease RNAse H [Halomonas elongata DSM 2581]
 gi|307216301|emb|CBV41571.1| K06959 [Halomonas elongata DSM 2581]
          Length = 784

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 604 EAAREMIRSITDVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             A E    +  +   E   + +G V  V  FGAFV     +DGLVHIS LS + V    
Sbjct: 639 FRAAEFREGVETLKDLEPGMVLEGSVTNVTHFGAFVDIGVHQDGLVHISALSNKFVEDPR 698

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            VVK GD V VK+++ D +R +I LSM++ DQ 
Sbjct: 699 SVVKAGDIVKVKVMNVDLERSRIGLSMRLDDQP 731


>gi|302328188|gb|ADL27389.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 590

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGA 635
           I ++   KV   +     I  S    +E  R   R       E N++ KG V  + DFGA
Sbjct: 168 IGQEFDLKVIKVNKARRNIVVSRRVVLEEERNKQRGDVLETLEKNQVRKGIVKNITDFGA 227

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNT 694
           F+   G  DGL+HI+ +S +R+   S++++ G  V V +LDF D + +I L MK +  + 
Sbjct: 228 FIDL-GGVDGLLHITDMSYKRINHPSEMLQLGQEVEVMVLDFNDKKERISLGMKQLKPHP 286

Query: 695 GKPIV 699
            K I 
Sbjct: 287 WKDIA 291



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 22/252 (8%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G +       ++ D+ G +  L      +         +  +  +  I    +  A +  
Sbjct: 130 GTLTKRIKGGVVVDLFGIDAFLPGSQIDLRQIPDINALIGQEFDLKVIK---VNKARRNI 186

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGA 583
              R  +L E         L+  E     + +          I +GG   +  I + +  
Sbjct: 187 VVSRRVVLEEERNKQRGDVLETLEKNQVRKGIVKNITDFGAFIDLGGVDGLLHITDMSYK 246

Query: 584 KVN---------------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           ++N               + D    K   S   +              PE   I KG+VV
Sbjct: 247 RINHPSEMLQLGQEVEVMVLDFNDKKERISLGMKQLKPHPWKDIAERYPEGA-IVKGKVV 305

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLS 686
            + D+GAFV      +GL+H+S++S  + V   S ++  G  V   +L  ++   +I L 
Sbjct: 306 SITDYGAFVELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEEDAERISLG 365

Query: 687 MKVVDQNTGKPI 698
           MK ++ +    I
Sbjct: 366 MKQLESDPWDSI 377



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI           G++  +  FGAFV      DGL+H+S +S  +++   +++VK+
Sbjct: 372 DPWDSIETELPPGARVVGEIRNIASFGAFVEIKEGVDGLIHVSDMSWTKKITHPNEMVKK 431

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D ++ +I LSMK + ++    I
Sbjct: 432 GDKVECVVLAVDKEKRRISLSMKHLTEDPWDSI 464



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   SI     V+   KG++V+++D G  V      +G + +S+L+ E +   +D  K G
Sbjct: 459 DPWDSIDSTYPVDSEVKGKIVRMLDRGVVVELADGIEGFIPVSKLTAEYIKVPADAFKVG 518

Query: 668 DTVWVKLLDFDDRGK-IKLS 686
           D V   + + D   + I LS
Sbjct: 519 DEVPAVVTEIDQNNRKIYLS 538


>gi|290961257|ref|YP_003492439.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
 gi|260650783|emb|CBG73900.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
          Length = 498

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 363 LSLKQANESFGSD 375



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|261415158|ref|YP_003248841.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371614|gb|ACX74359.1| ribosomal protein S1 [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 590

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGA 635
           I ++   KV   +     I  S    +E  R   R       E N++ KG V  + DFGA
Sbjct: 168 IGQEFDLKVIKVNKARRNIVVSRRVVLEEERNKQRGDVLETLEKNQVRKGIVKNITDFGA 227

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNT 694
           F+   G  DGL+HI+ +S +R+   S++++ G  V V +LDF D + +I L MK +  + 
Sbjct: 228 FIDL-GGVDGLLHITDMSYKRINHPSEMLQLGQEVEVMVLDFNDKKERISLGMKQLKPHP 286

Query: 695 GKPIV 699
            K I 
Sbjct: 287 WKDIA 291



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 22/252 (8%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G +       ++ D+ G +  L      +         +  +  +  I    +  A +  
Sbjct: 130 GTLTKRIKGGVVVDLFGIDAFLPGSQIDLRQIPDINALIGQEFDLKVIK---VNKARRNI 186

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGA 583
              R  +L E         L+  E     + +          I +GG   +  I + +  
Sbjct: 187 VVSRRVVLEEERNKQRGDVLETLEKNQVRKGIVKNITDFGAFIDLGGVDGLLHITDMSYK 246

Query: 584 KVN---------------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           ++N               + D    K   S   +              PE   I KG+VV
Sbjct: 247 RINHPSEMLQLGQEVEVMVLDFNDKKERISLGMKQLKPHPWKDIAERYPEGA-IVKGKVV 305

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLS 686
            + D+GAFV      +GL+H+S++S  + V   S ++  G  V   +L  ++   +I L 
Sbjct: 306 SITDYGAFVELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEEDAERISLG 365

Query: 687 MKVVDQNTGKPI 698
           MK ++ +    I
Sbjct: 366 MKQLESDPWDSI 377



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI           G++  +  FGAFV      DGL+H+S +S  +++   +++VK+
Sbjct: 372 DPWDSIETELPPGARVVGEIRNIASFGAFVEIKEGVDGLIHVSDMSWTKKITHPNEMVKK 431

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D ++ +I LSMK + ++    I
Sbjct: 432 GDKVECVVLAVDKEKRRISLSMKHLTEDPWDSI 464



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   SI     V+   KG++V+++D G  V      +G + +S+L+ E +   +D  K G
Sbjct: 459 DPWDSIDSTYPVDSEVKGKIVRMLDRGVVVELADGIEGFIPVSKLTAEYIKVPADAFKVG 518

Query: 668 DTVWVKLLDFDDRGK-IKLS 686
           D V   + + D   + I LS
Sbjct: 519 DEVPAVVTEIDQNNRKIYLS 538


>gi|157961894|ref|YP_001501928.1| 30S ribosomal protein S1 [Shewanella pealeana ATCC 700345]
 gi|157846894|gb|ABV87393.1| ribosomal protein S1 [Shewanella pealeana ATCC 700345]
          Length = 555

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDALLENLQEGQSV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +            +  
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFAERF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVAEYKKGDEIHAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686
             V   G  +      +G + +S +S ER+   S V   GD V  K +  D + + I LS
Sbjct: 459 TAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDKVESKFMGVDRKNRTISLS 518

Query: 687 MKVVDQNTGKP 697
           ++  D+   K 
Sbjct: 519 IRAKDEAEEKE 529


>gi|54309615|ref|YP_130635.1| 30S ribosomal protein S1 [Photobacterium profundum SS9]
 gi|46914053|emb|CAG20833.1| putative ribosomal protein S1 [Photobacterium profundum SS9]
          Length = 556

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 91/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++A+     I  ++    +    
Sbjct: 66  AEVDVALDAIEDGFGETKLSREKAKRHEAWIQLEKAYEEAETVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVERDELLASLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I      +    
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLS 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D+ R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------AHLENKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    LA +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDEL----LASLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + + RV  +      +    G+ G V    ++ T   +          
Sbjct: 267 WVAIAKRYPESTKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +S  ++        G++  + DFG F+ 
Sbjct: 327 EVEVMVLDIDEERRRISLGLKQCKAN----PWQSFAEMQAKGDRVTGKIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S          D  K+GD +   +L  D +R +I L +K ++++ 
Sbjct: 383 LDGGIDGLVHLSDISWNVTGEDAVRD-FKKGDEISAVVLAVDAERERISLGIKQIEEDP 440



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S     +   +  G V  V   GA V      +G +  S+ S +RV   + V+  G
Sbjct: 439 DPFNSYVADNKKGVLVNGTVTAVDAKGATVELAVGVEGYLRASEASVDRVEDATLVLSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D+V  K    D + + + LS++  D
Sbjct: 499 DSVEAKFTGVDRKNRVVNLSVRAKD 523


>gi|304440262|ref|ZP_07400152.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371311|gb|EFM24927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 671

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +          EV     G VV ++DFGAFV      DGL+H+SQ+S + + K +D++  
Sbjct: 536 KRPWDEFVSSVEVGDTVTGHVVNLLDFGAFVRLESGVDGLLHVSQISRDHIEKPADILNI 595

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           GD V VK+ D D +  KI LS+K +
Sbjct: 596 GDEVTVKVTDIDEENKKISLSIKAL 620



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 11/187 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +      +  +    H+ N +   L+     L  F P   +       +   +G     
Sbjct: 367 WDEFEQKFENKENVVAHVKNVVKGGLTADVDGLKAFIPASHVAMRFQRDLNKFVG----- 421

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                +     ++ D      + S    E +   +  + +        + +G V ++ DF
Sbjct: 422 ----QDLECEIIDFDKAKRRIVLSRKNIEEKQFEDTRKEVFSKLHEGDVIEGTVQRLTDF 477

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  DGL+HIS++S  R+   S+VV  G+ V V++L+ D ++ +I L +K   +
Sbjct: 478 GAFVDV-GGVDGLIHISEMSWNRIKHPSEVVAPGENVEVQILNLDEEKNRIALGLKQTTK 536

Query: 693 NTGKPIV 699
                 V
Sbjct: 537 RPWDEFV 543



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+  A E         E   I +G+V+ V D    V+     DG+V   +LS+    K S
Sbjct: 275 EMMEAIENSFKRVRRGE---IVEGEVLYVTDNEIMVNIGYRSDGIVSREELSSNPDVKPS 331

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           D+ K GDT+ V ++  DD  G + LS K V+
Sbjct: 332 DLFKPGDTIQVYVIKIDDGDGNVVLSHKRVE 362



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + IDD DG V ++   +     A ++        E  +     V  V+  G      G +
Sbjct: 345 IKIDDGDGNVVLSHKRVE----AMKVWDEFEQKFENKENVVAHVKNVVKGGLTADVDGLK 400

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
              +  S ++       +  V  G  +  +++DFD  + +I LS K +++   + 
Sbjct: 401 -AFIPASHVAMRFQRDLNKFV--GQDLECEIIDFDKAKRRIVLSRKNIEEKQFED 452


>gi|303252099|ref|ZP_07338268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248294|ref|ZP_07530320.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649081|gb|EFL79268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855228|gb|EFM87405.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 775

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNT 694
           VK+L+ D  R +I L+M++ D+ T
Sbjct: 710 VKVLEVDVQRKRIALTMRLEDKPT 733


>gi|195334242|ref|XP_002033793.1| GM21509 [Drosophila sechellia]
 gi|194125763|gb|EDW47806.1| GM21509 [Drosophila sechellia]
          Length = 1242

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEG 667
           ++TD PE  KIY G++  ++ FG FV   G R   +GLVHISQL +  RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            TV VK++    + K+ LSMK VDQ++GK +
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGKDL 366


>gi|332366847|gb|EGJ44588.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1059]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|269102376|ref|ZP_06155073.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162274|gb|EEZ40770.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 556

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 105/258 (40%), Gaps = 23/258 (8%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDS-GITAMQMDMKIGG 511
           +   V  I  G V         S I  ++  +  G ++ +V       I A++       
Sbjct: 24  VKGTVVAIENGYVLVDAGLKSESSIPAEQFKNAAGELEIEVGSEVDVAIDAIEDGFGETQ 83

Query: 512 ISEN---------IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +S            +  A + A+     I  ++    +     +  F P      +    
Sbjct: 84  LSREKAKRHEAWIQLEKAYEDAETVVGIINGKVKGGFTVELNGIRAFLPGSL---VDVRP 140

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+   +  K +   V +   K N      V ++  ++ E E + E    +  + E  ++
Sbjct: 141 VRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESENSVERDELLASLQEGMEV 195

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD DR 
Sbjct: 196 -KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRDRT 253

Query: 682 KIKLSMKVVDQNTGKPIV 699
           ++ L +K + ++    I 
Sbjct: 254 RVSLGLKQLGEDPWVAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 265 DPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L +K    N  +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQ 355



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 132/359 (36%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------AHLENKELEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S     +    LA +  G+ +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESENSVERDEL----LASLQEGMEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I+  ++     + +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRDRTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +++   +  + T RV  +      +    G+ G V    ++ T   +          
Sbjct: 267 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGD 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +        +S  ++        G++  + DFG F+ 
Sbjct: 327 EVEVMVLDIDEERRRISLGLKQCKAN----PWQSFAEMQAKGDKVTGKIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K ++++ 
Sbjct: 383 LEGGIDGLVHLSDISWN-VAGEEAVRDFKKGDEISAVVLAVDAERERISLGIKQIEEDP 440



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +  G V  V   GA V      +G +  S+ S +RV   + V+  G
Sbjct: 439 DPFNGFVAATKKGALVNGTVTAVDAKGATVELAEGVEGYLRASEASVDRVEDATLVLSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D+V  K    D + + I LS++  D
Sbjct: 499 DSVEAKFTGVDRKNRVINLSVRAKD 523


>gi|192362187|ref|YP_001982579.1| 30S ribosomal protein S1 [Cellvibrio japonicus Ueda107]
 gi|190688352|gb|ACE86030.1| ribosomal protein S1 [Cellvibrio japonicus Ueda107]
          Length = 558

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +  I+  A    +  +  I  ++    +    
Sbjct: 66  DEVQVALESVEDGFGETKLSREKAKRAEAWKILEAAHVAEEVIKGVINGKVKGGFTVDVA 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R    + GK +   V +   K N      V ++  ++ E  
Sbjct: 126 GIRAFLPGSL---VDVRPVRETTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVLEQA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    ++ + E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+    ++V
Sbjct: 178 NSVERDELLSSLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPGEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GD + VK+L FD +R ++ L +K + ++  
Sbjct: 236 NVGDEIEVKVLKFDRERNRVSLGLKQLGEDPW 267



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    ++  G  VN+ D+  VK+          +        +    IT         K
Sbjct: 222 DMAWKRIKHPGEIVNVGDEIEVKVLKFDRERNRVSLGLKQLGEDPWIQITKRYPEGARVK 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            +V  + D+G F       +GL+H+S++    +    S VV+ GD + V +LD D+ R +
Sbjct: 282 AKVTNLTDYGCFAELEEGVEGLIHVSEMDWTNKNIHPSKVVQLGDEIEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTG 695
           I L +K   +N  
Sbjct: 342 ISLGLKQCQENPW 354



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G  I  +V      ++ID++           +         +     
Sbjct: 316 IHPSKVVQL----GDEIEVMV------LDIDEERRRISLGLKQCQEN----PWDAFARTC 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S        + V   K+GD +   +
Sbjct: 362 AKGDKITGKIKSITDFGIFIGLDGGIDGLVHLSDISWHEAG--EEAVRKYKKGDEIETVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 420 LAIDPERERISLGIKQLEADP 440



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V +V    A V      +G++  S+LS E+V    +++K GD V  K++  D + 
Sbjct: 453 VVKGIVKEVEAKAAVVTLADDVEGVLKASELSREKVEDARNLLKAGDEVEAKIIAVDRKN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D    K
Sbjct: 513 RTISLSVKSKDVEDEK 528


>gi|332361158|gb|EGJ38962.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1056]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|309800113|ref|ZP_07694305.1| putative 30S ribosomal protein S1 [Streptococcus infantis SK1302]
 gi|308116254|gb|EFO53738.1| putative 30S ribosomal protein S1 [Streptococcus infantis SK1302]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNADAERVSLSIKALEERPTQE 357



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEVEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|303254044|ref|ZP_07340161.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS455]
 gi|303260750|ref|ZP_07346709.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP-BS293]
 gi|303263108|ref|ZP_07349038.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS292]
 gi|303265028|ref|ZP_07350942.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS397]
 gi|303267475|ref|ZP_07353326.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS457]
 gi|303269841|ref|ZP_07355587.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS458]
 gi|307127588|ref|YP_003879619.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae 670-6B]
 gi|301801686|emb|CBW34391.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV200]
 gi|302598980|gb|EFL66009.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS455]
 gi|302635761|gb|EFL66266.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS292]
 gi|302638118|gb|EFL68594.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP-BS293]
 gi|302640638|gb|EFL71039.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS458]
 gi|302642981|gb|EFL73277.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS457]
 gi|302645388|gb|EFL75621.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS397]
 gi|306484650|gb|ADM91519.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae 670-6B]
 gi|332077274|gb|EGI87736.1| hypothetical protein SPAR148_0810 [Streptococcus pneumoniae
           GA17545]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMKVVDQNTG 695
            + G++ LS+K       
Sbjct: 252 EEEGRVSLSIKATVPGPW 269


>gi|304310672|ref|YP_003810270.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1]
 gi|301796405|emb|CBL44613.1| 30S ribosomal protein S1 [gamma proteobacterium HdN1]
          Length = 551

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +   +  A + ++  +  I  ++    +    
Sbjct: 61  DEIEVALESIEDGYGETRLSREKAKRAEAWRRLEAACEASQIVKGIINGKVKGGFTVDVD 120

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +  AK N      V ++  ++ E E
Sbjct: 121 AVRAFLPGSL---VDIRPVRDTAHLEGKELEFKVIKLDAKRN-----NVVVSRRAVLEAE 172

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    ++++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 173 NSAEREALLSNLQEGMEV-KGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEIV 230

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD DR ++ L +K +  +    I
Sbjct: 231 AVGDEILVKVLKFDRDRNRVSLGLKQLGSDPWVEI 265



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
             +      PE  ++ K +V  + D+G F       +GLVH+S++    +    S VV  
Sbjct: 261 PWVEIKARYPEGARV-KARVTNLTDYGCFAELQEGVEGLVHVSEMDWTNKNIHPSKVVSI 319

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ + V +LD D +R +I L +K    N  + 
Sbjct: 320 GEEIEVVILDIDEERRRISLGVKQCKPNPWEE 351



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      + ++  S++S +R+    + +KEGD +  +++  D + 
Sbjct: 448 VVKGTVKSVDAKGAVVELRDGVEAVLKASEISRDRIEDARNALKEGDVIEARIIAVDRKN 507

Query: 682 K-IKLSMKVVDQNTGKP 697
           + I LS+K  D    K 
Sbjct: 508 RAINLSVKAKDAADEKE 524



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ ++    G+ I  ++      ++ID++           +               
Sbjct: 311 IHPSKVVSI----GEEIEVVI------LDIDEERRRISLGVKQCKPN----PWEEFATHF 356

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S +      + V   K+GD +   +
Sbjct: 357 NKGDRISGKIKSITDFGIFIGLDGGIDGLVHLSDISWDLPG--EEAVRAYKKGDEIDTVI 414

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K + ++ 
Sbjct: 415 LSVDPERERISLGVKQLSEDP 435


>gi|261344527|ref|ZP_05972171.1| protein YhgF [Providencia rustigianii DSM 4541]
 gi|282567440|gb|EFB72975.1| protein YhgF [Providencia rustigianii DSM 4541]
          Length = 776

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+LD D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVLDVDIP 710

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ +Q
Sbjct: 711 RKRIALTMRLDEQ 723


>gi|218708217|ref|YP_002415838.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32]
 gi|218321236|emb|CAV17186.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32]
          Length = 776

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSMSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIALSMRMKDEP 725


>gi|86146555|ref|ZP_01064877.1| hypothetical protein MED222_18163 [Vibrio sp. MED222]
 gi|85835612|gb|EAQ53748.1| hypothetical protein MED222_18163 [Vibrio sp. MED222]
          Length = 776

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSMSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIALSMRMKDEP 725


>gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603]
          Length = 488

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++  G V  +++FGAFV
Sbjct: 164 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFV 223

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 224 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQ 282



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 242 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQTFARTHAIGQVVPG 296

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD  +VK++D D +R +I 
Sbjct: 297 KVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVNVGDDAFVKVIDIDLERRRIS 356

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 357 LSLKQANE 364



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +      +VV  GD+V   +L   D 
Sbjct: 34  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGDSVEALVLQKEDK 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 94  EGRLILSKKRAQ 105


>gi|225868407|ref|YP_002744355.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus]
 gi|225701683|emb|CAW99009.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp.
           zooepidemicus]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAQGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+LD +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLDVNAADERVSLSIKALEERPAQ 356



 Score = 37.6 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++   +  + +  G  V F G R G +  S + T  V  T   V  G     K+ + D  
Sbjct: 108 EVVTVKGTRAVKGGLSVEFEGLR-GFIPASMIDTRFVRNTEKFV--GQEFDAKIKEVDAA 164

Query: 680 RGKIKLSMKVVDQNTGK 696
             +  LS + V +   K
Sbjct: 165 ENRFILSRREVVEEAAK 181


>gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 492

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +R       +  +I KG V  +++FGAFV
Sbjct: 175 QEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRMNFLTQLQKGQIRKGVVSSIVNFGAFV 234

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   ++VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 235 DL-GGVDGLVHVSELSWKHIDHPTEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 293



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ +I  G
Sbjct: 253 IDHPTEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQMGQIVPG 307

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D V VK++D D +R +I 
Sbjct: 308 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRIS 367

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 368 LSLKQANE 375



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 45  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKEDK 104

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 105 EGRLILSKKRAQ 116



 Score = 43.7 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D     I S   A+ E A   I     + E + +  G V++V+  G  +       G +
Sbjct: 102 EDKEGRLILSKKRAQYEKAWGTIE---KIKEEDGVVTGTVIEVVKGGLILDI--GLRGFL 156

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             S +   RV      V  G  +  K+++ D +R  + LS +   + T
Sbjct: 157 PASLVEMRRVRDLQPYV--GQEIEAKIIELDKNRNNVVLSRRAWLEQT 202


>gi|73663557|ref|YP_302338.1| hypothetical protein SSP2248 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496072|dbj|BAE19393.1| putative RNA binding protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 132

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       +P
Sbjct: 64  ADDGKISLSIKKAKDRPRRP 83


>gi|327474468|gb|EGF19874.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK408]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLATGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|227509309|ref|ZP_03939358.1| RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191239|gb|EEI71306.1| RNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 169

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  + +FGAF+     R GLVHIS++S   V    DV+K GD V VK+L  
Sbjct: 4   EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDEVTVKVLKI 63

Query: 678 DDRGKIKLS-MKVVD 691
           +   KI LS  K  D
Sbjct: 64  EGNNKISLSIRKATD 78


>gi|227512321|ref|ZP_03942370.1| RNA-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227522407|ref|ZP_03952456.1| RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227084496|gb|EEI19808.1| RNA-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227090465|gb|EEI25777.1| RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 169

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  + +FGAF+     R GLVHIS++S   V    DV+K GD V VK+L  
Sbjct: 4   EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDEVTVKVLKI 63

Query: 678 DDRGKIKLS-MKVVD 691
           +   KI LS  K  D
Sbjct: 64  EGNNKISLSIRKATD 78


>gi|167623971|ref|YP_001674265.1| 30S ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
 gi|167353993|gb|ABZ76606.1| ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
          Length = 555

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDALLENLQEGQSV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +            +  
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFAERF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVAEYKKGDEIHAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686
             V   G  +      +G + +S +S ER+   S V   GD V  K +  D + + I LS
Sbjct: 459 TAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYAVGDKVESKFMGVDRKNRTISLS 518

Query: 687 MKVVDQNTGKP 697
           ++  D+   K 
Sbjct: 519 IRAKDEAEEKE 529


>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
          Length = 251

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 10/190 (5%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R+DGR    +R +  Q G    + G     +G+T+ I  V +G        D      
Sbjct: 1   GRRVDGRRPNELRRVHCQFG-SGNSDGIVFLHQGNTKVIASV-VGPHAPRTKGDG--NPD 56

Query: 371 RNDFMMHYNFLPCAT--GEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
               +  +   P A+  GE  ++ +  R               V+         + I  E
Sbjct: 57  GATIICQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLE 116

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + +SDGS     V  ++LAL DAG+ +   V+   +GL        + +D+   E++   
Sbjct: 117 VIQSDGSEFACAVNATTLALTDAGIEMHYLVSAATVGLWGS----RVFADLCRFEENPRL 172

Query: 489 MDFKVAGTDS 498
               V     
Sbjct: 173 SQLTVVCLPD 182



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYLRRE 81
            SDG V    G T V+A+VV   + +   D  P    +   + +  +A      G  R+ 
Sbjct: 23  NSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATIICQFTKPPFAS---TSGERRKV 79

Query: 82  SRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
           +    +    S  I+     +    K   ++  + + V+Q D        ++ A + AL 
Sbjct: 80  ASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQSDGSEFAC--AVNATTLALT 137

Query: 140 LSGLPFEGPVVGAQVDYINGQYVL--------NPRLDED 170
            +G+     V  A V    G  V         NPRL + 
Sbjct: 138 DAGIEMHYLVSAATVGLW-GSRVFADLCRFEENPRLSQL 175


>gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
          Length = 503

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 172 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 231

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 232 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 290



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 250 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 304

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 305 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 364

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 365 LSLKQANESFGAD 377



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 23  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 79

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 80  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 113


>gi|315052548|ref|XP_003175648.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Arthroderma gypseum CBS 118893]
 gi|311340963|gb|EFR00166.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Arthroderma gypseum CBS 118893]
          Length = 1217

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           R     + D P + KIY G+V  + DFG FV+  G R   DGLVH+S +    RV   SD
Sbjct: 235 RPPTLEVDDRPILFKIYDGKVTGIKDFGVFVNLQGVRGRVDGLVHVSAMQEGARVNHPSD 294

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++   D  +I LSMK VDQ +G  + 
Sbjct: 295 LVSRGQQVKVKVVSIQDS-RIGLSMKEVDQVSGHDLA 330


>gi|212637532|ref|YP_002314057.1| RNA binding S1 [Shewanella piezotolerans WP3]
 gi|212559016|gb|ACJ31470.1| RNA binding S1 [Shewanella piezotolerans WP3]
          Length = 777

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  + + I +G V  V +FGAFV     +DGLVHIS ++ + +     VVK GD V 
Sbjct: 644 EQINDLKPDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGDIVK 703

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D +R +I LSM++ D+    P
Sbjct: 704 VKVMEVDAERRRIGLSMRLTDKAGEAP 730


>gi|209964723|ref|YP_002297638.1| Tex-like protein, transcription accessory protein (S1 RNA binding
           domain) [Rhodospirillum centenum SW]
 gi|209958189|gb|ACI98825.1| Tex-like protein, transcription accessory protein (S1 RNA binding
           domain) [Rhodospirillum centenum SW]
          Length = 796

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +         +   + +G V  V +FGAFV     +DG
Sbjct: 616 DILRELEKPGRDPRPEFKTAAFKDGVEDLKDLQPGMVLEGVVTNVTNFGAFVDVGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHISQLS   V     VVK GD V VK+L+ D  R ++ L+MK+ +Q   +
Sbjct: 676 LVHISQLSHTFVKDPRAVVKAGDIVKVKVLEVDLKRRRVALTMKLDEQPAPR 727


>gi|21428730|gb|AAM50025.1| SD07467p [Drosophila melanogaster]
          Length = 1242

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEG 667
           ++TD PE  KIY G++  ++ FG FV   G R   +GLVHISQL +  RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            TV VK++    + K+ LSMK VDQ++GK +
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGKDL 366


>gi|20129977|ref|NP_610928.1| peanuts [Drosophila melanogaster]
 gi|7303231|gb|AAF58294.1| peanuts [Drosophila melanogaster]
 gi|201065755|gb|ACH92287.1| FI05376p [Drosophila melanogaster]
          Length = 1242

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEG 667
           ++TD PE  KIY G++  ++ FG FV   G R   +GLVHISQL +  RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            TV VK++    + K+ LSMK VDQ++GK +
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGKDL 366


>gi|284044326|ref|YP_003394666.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
 gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
          Length = 529

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   I +G +  ++DFGAFV      DGL+HIS+LS   V   S+++  GDTV VK+L
Sbjct: 210 RLQPGMIVEGTISNIVDFGAFVDL-DGIDGLIHISELSWSHVNHPSEILSIGDTVSVKVL 268

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPIV 699
           D D DR +I L +K   ++  + +V
Sbjct: 269 DIDRDRQRISLGLKQTQEDPWQRVV 293



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + + D   V    +G+V KV+ FGAFV      +GLVHIS+L+   V    ++++  
Sbjct: 287 DPWQRVVDTYNVGDELEGRVTKVVTFGAFVEILDGVEGLVHISELAQHHVENPREIIQPN 346

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V VK+L+ D +R ++ LS+K V+
Sbjct: 347 DEVKVKILEIDSERRRLSLSIKRVE 371



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           E   +  G VV++      V      +G++  ++LS  +     D V+ G+ V   +L  
Sbjct: 39  EEGDVVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKDEVEMGEEVDALVLTK 98

Query: 677 FDDRGKIKLSMK 688
            D  G++ LS K
Sbjct: 99  EDQDGRLILSKK 110


>gi|219870727|ref|YP_002475102.1| transcriptional accessory protein (S1 RNA binding domain)
           [Haemophilus parasuis SH0165]
 gi|219690931|gb|ACL32154.1| transcriptional accessory protein (S1 RNA binding domain)
           [Haemophilus parasuis SH0165]
          Length = 769

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ 
Sbjct: 651 KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISMLSNSFVEDPHQVVKTGDVVKVKVLEV 710

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M++ D+ T K
Sbjct: 711 DVARKRIALTMRLDDKPTDK 730


>gi|167855135|ref|ZP_02477907.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755]
 gi|167853770|gb|EDS25012.1| hypothetical protein HPS_06899 [Haemophilus parasuis 29755]
          Length = 769

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ 
Sbjct: 651 KVGMILEGTVTNVTNFGAFVDIGVHQDGLVHISMLSNSFVEDPHQVVKTGDVVKVKVLEV 710

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M++ D+ T K
Sbjct: 711 DVARKRIALTMRLDDKPTDK 730


>gi|125973232|ref|YP_001037142.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium thermocellum ATCC 27405]
 gi|281417431|ref|ZP_06248451.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum JW20]
 gi|125713457|gb|ABN51949.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|281408833|gb|EFB39091.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum JW20]
 gi|316940538|gb|ADU74572.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           thermocellum DSM 1313]
          Length = 694

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 13/185 (7%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S + +V A +       +++  +   +  S   +  F P      +    ++++     +
Sbjct: 386 SWDDIVKAYENKTPVNAYVVEVVKGGVIASYKGVRIFVPAS---QVSDRYVKDLNEFLKR 442

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVM 631
            I   + +   K         K+  S+   IE  +E + + T    EV K++KG V  + 
Sbjct: 443 SITVRILELNEK-------RRKVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLT 495

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           DFGAFV   G  DGL+HIS+LS  RV   S+V+K GD V V +L+FD ++ K+ L  + +
Sbjct: 496 DFGAFVDI-GGVDGLIHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKM 554

Query: 691 DQNTG 695
           + N  
Sbjct: 555 EDNPW 559



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +V  + K  V++   FGAFV      DGLVHISQ+S++R+AK  D ++ G 
Sbjct: 558 PWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSKRLAKVEDALEIGM 617

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            V  K+++ D +  KI LS+K V
Sbjct: 618 KVDAKIIEVDGENKKISLSIKEV 640



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 558 IPPDQIRNV-IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           +   +I+ V I  G      ++E+   K++  +   +     +  EI+ A     S   +
Sbjct: 248 VDIKKIKKVGISAGASTPDWVIEEVIKKMSELNKQGMVDILENDGEIDFANAFENSFVRI 307

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
              + + KG+++       FV      DG++ + + + +        VK G+ V V +  
Sbjct: 308 HAGDTV-KGKIIGFNSNEVFVDLGYKADGIIPLEEYTDDPNFNIEKEVKIGEEVEVLVEM 366

Query: 677 F-DDRGKIKLSMKVVDQ-NTGKPIV 699
             D  G ++LS + VD   +   IV
Sbjct: 367 VNDGEGNVRLSKRKVDAIKSWDDIV 391


>gi|59710727|ref|YP_203503.1| transcriptional accessory protein [Vibrio fischeri ES114]
 gi|59478828|gb|AAW84615.1| predicted transcriptional accessory protein [Vibrio fischeri ES114]
          Length = 771

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E+  + +G V  V +FGAFV     +DGLVHIS LS   V+   +VVK GD V 
Sbjct: 640 NTVSDLELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVK 699

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 700 VKVMEVDVQRKRIALSMR-LNDKPGED 725


>gi|114561423|ref|YP_748936.1| RNA-binding S1 domain-containing protein [Shewanella frigidimarina
           NCIMB 400]
 gi|114332716|gb|ABI70098.1| RNA binding S1 domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 790

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  V +FGAFV     +DGLVHIS L+ + V+    VVK GD V VK+++ 
Sbjct: 650 KVEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEV 709

Query: 678 D-DRGKIKLSM---------KVVDQNTGKP 697
           D +R +I LSM         K + Q+ GKP
Sbjct: 710 DIERRRIALSMRLDEKIDTEKAIRQSQGKP 739


>gi|325694460|gb|EGD36369.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK150]
 gi|332360264|gb|EGJ38077.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK355]
 gi|332360840|gb|EGJ38646.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK49]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|325687504|gb|EGD29525.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK72]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|324991109|gb|EGC23043.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK353]
 gi|324992856|gb|EGC24776.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK405]
 gi|324994504|gb|EGC26417.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK678]
 gi|325689660|gb|EGD31664.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK115]
 gi|325696551|gb|EGD38441.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK160]
 gi|327462163|gb|EGF08490.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1]
 gi|327469991|gb|EGF15455.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK330]
 gi|327489845|gb|EGF21635.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1058]
 gi|328946259|gb|EGG40403.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1087]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|257095432|ref|YP_003169073.1| RNA-binding S1 domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047956|gb|ACV37144.1| RNA binding S1 domain protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 774

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 18/143 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR----------- 611
           IR++IG        ++     +  IDD   +      L E+E      R           
Sbjct: 598 IRDIIG-----DSRMLRTLEPERFIDDKFGLPTVRDILRELEKPGRDPRPEFRAATFREG 652

Query: 612 -SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  +   I +G V  V +FGAFV     +DGLVHIS ++   V     VVK GD V
Sbjct: 653 VEQVKDLQPGMILEGVVTNVANFGAFVDIGVHQDGLVHISAIADRFVKDPRAVVKAGDVV 712

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            VK+L+ D  R +I LSM++ D+
Sbjct: 713 KVKVLEVDLARQRIALSMRLADE 735


>gi|254391555|ref|ZP_05006755.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|294812024|ref|ZP_06770667.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|326440254|ref|ZP_08214988.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|197705242|gb|EDY51054.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|294324623|gb|EFG06266.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
          Length = 496

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 169 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 228

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 229 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 287



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 247 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 302 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 361

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 362 LSLKQANESFGAD 374



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 20  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 76

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 77  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 110


>gi|149010508|ref|ZP_01831879.1| ribosomal protein S1 [Streptococcus pneumoniae SP19-BS75]
 gi|147764989|gb|EDK71918.1| ribosomal protein S1 [Streptococcus pneumoniae SP19-BS75]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +K G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ + D  ++ LS+K +++   + 
Sbjct: 328 EVQVKVLEVNADAERVSLSIKALEERPAQE 357



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++  FGAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD +
Sbjct: 193 VGDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLN 251

Query: 679 -DRGKIKLSMKVVDQNTG 695
            + G++ LS+K       
Sbjct: 252 EEEGRVSLSIKATVPGPW 269


>gi|323351529|ref|ZP_08087183.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66]
 gi|322122015|gb|EFX93741.1| 30S ribosomal protein S1 [Streptococcus sanguinis VMC66]
          Length = 400

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDVIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|294140845|ref|YP_003556823.1| 30S ribosomal protein S1 [Shewanella violacea DSS12]
 gi|293327314|dbj|BAJ02045.1| ribosomal protein S1 [Shewanella violacea DSS12]
          Length = 555

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            H+         G T +  +      +  ++  A + A+     I  ++    +     +
Sbjct: 68  VHVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGVINGKVKGGFTVELNGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   +  K +   V +   K N      V ++  ++ E E++
Sbjct: 128 RAFLPGSL---VDVRPVRDTAHLENKDLEFKVIKLDQKRN-----NVVVSRRAVIESESS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 180 AERDALLENLQEGQAI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 GDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    ++ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAIKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKVNPWDD 356



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G VV V   G  +      +G + +S +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGAVVHGTVVAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K +  D + + I LS++  D+   K 
Sbjct: 499 DAVESKFMGVDRKNRTISLSIRAKDEAEEKE 529



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           ++           +  
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKVN----PWDDFAERF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S         +D  K+GD +   +L
Sbjct: 362 NKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVADY-KKGDEINAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K  + + 
Sbjct: 421 SVDPERERISLGVKQTEDDP 440


>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
          Length = 303

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 21/230 (9%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +K+ R DGR  E +R +  Q   L    GS+    G T+ +     G R + ++    + 
Sbjct: 43  NKRERHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTK-LNCAVYGPRPNMKH----AS 97

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH-GRLARRAIHPVLPQTAQFPYTLRIVS 427
             R    + + F P AT   +   A S R+  H   L  +A++ V+        T+ +  
Sbjct: 98  QDRGSINLEFRFAPFAT---TGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSV 154

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG-----DDFIILSDISGD 482
            + E DG    A +    LAL DAG+ +   V G +  +   G         +L D   +
Sbjct: 155 LVLEDDGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAE 214

Query: 483 E------DHLGHMDFKVAGTDSGITAMQMDMK-IGGISENIMVMALQQAK 525
           E       +   +D       + +  ++     +   S   M+   + A 
Sbjct: 215 ERRAFADKNCTFVDLGYCPALASVCFIRASGTLLATESGEQMLRLCEAAC 264


>gi|148378180|ref|YP_001252721.1| RNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931281|ref|YP_001382580.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153934599|ref|YP_001386133.1| RNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148287664|emb|CAL81729.1| putative RNA binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927325|gb|ABS32825.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930513|gb|ABS36012.1| RNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 718

 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DKKRNRISLSMK 717


>gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
          Length = 488

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +R       +  ++  G V  +++FG
Sbjct: 167 YIGQKVDAKIIELDKNRNNVVLSRRAWLEETQSTVRHDFLQTLQKGQVRPGVVSSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   ++VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLDVDMDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   
Sbjct: 285 DPWQHFARTHVIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVTVD 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           +TV+VK++D D +R +I LS+K  ++
Sbjct: 345 ETVYVKVIDIDLERRRISLSLKQANE 370



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      V      +G++   +LS +     ++VV+ GD +   +L   D 
Sbjct: 40  DIVEGTIVKVDRDEVLVDIGYKTEGVILSRELSIKHDVDPAEVVEVGDPIEALVLTKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 DGRLMLSKKRAQ 111


>gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C]
 gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C]
          Length = 504

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 171 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 230

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 289



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 249 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 303

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 304 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 363

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 364 LSLKQANESFGAD 376



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 22  NAEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 78

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 79  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 112


>gi|94266273|ref|ZP_01289978.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
 gi|93453124|gb|EAT03595.1| Ribosomal protein S1 [delta proteobacterium MLMS-1]
          Length = 530

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 9/238 (3%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
            LV  GD      DI+   +  G ++ KV  T      ++     GGI  +       + 
Sbjct: 7   VLVDIGDKSEGEIDITEFRNEEGEIEVKVGDTFE--VYVEKREPEGGIKLSRERAIGIKV 64

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI--GMGGKVIRGIVEQTG 582
                 I    S +    R+           + +P     + I       +   I E   
Sbjct: 65  WEEIARIQEADSTIAG--RIDSRVKGGLSVDIGVPAFLPYSQIDLRPVRDLDALIGESFD 122

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            K+   +     +  S  A +E AR+ +R+      E  ++  G V  + D+G FV   G
Sbjct: 123 FKILKFNRRRNNVVISRRAIMEEARQQLRNEMRGTLEEGQVLTGTVTNITDYGVFVDLGG 182

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
             DGL HI+ LS  RV+  S + K GD + VK+L +D    K+ L +K +  +  + I
Sbjct: 183 M-DGLCHITDLSWGRVSHPSKMFKVGDDIQVKVLKYDQENDKVSLGVKQLKSDPWETI 239



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V     G+VV + D+GAFV      +GLVHIS++S  ++    S +V  
Sbjct: 234 DPWETIQQRYPVGAKVPGKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVTV 293

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GD V V +L+ D    +I L MK +  N  
Sbjct: 294 GDEVEVSVLNVDPEAKRISLGMKQLQPNPW 323



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +   +    +G++  V DFG FV      +GL+H+S+LS E+V     +   G
Sbjct: 408 DPWEAAVEKYAIGTKLEGKITNVTDFGVFVELEEGIEGLIHVSELSKEKVETPVGLYNVG 467

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           DT+  ++++   +  KI LS+K +     +
Sbjct: 468 DTIEARVINVSAKDRKIGLSIKALSGEDEE 497



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      I +G++  + DFG F+      DGL+H+S LS  ER+    +   +G
Sbjct: 322 PWDMVAENYPAGSIIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKG 381

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +T+   +L  D +  +  L +K +  +  +  V
Sbjct: 382 ETIQAVVLKIDKENERFSLGIKQLQPDPWEAAV 414


>gi|297583496|ref|YP_003699276.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297141953|gb|ADH98710.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 142

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G++  +  FGAFV     + GLVHIS ++   V   + V+  GDT+ VK+L  
Sbjct: 6   EAGSIVEGKITGIKPFGAFVALDEKKQGLVHISHVAHGYVEDINSVLSVGDTIKVKILSV 65

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           D+  GKI LS+K       +P
Sbjct: 66  DEESGKISLSIKETQPKPERP 86


>gi|325678555|ref|ZP_08158166.1| S1 RNA binding domain protein [Ruminococcus albus 8]
 gi|324109774|gb|EGC03979.1| S1 RNA binding domain protein [Ruminococcus albus 8]
          Length = 159

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV KIY+G+V  +  FGAFV       G+VHIS+++   V +  D ++EG TV VK+
Sbjct: 1   MQLEVGKIYEGKVTGITKFGAFVELDKDTTGMVHISEVANTFVNEIKDHLQEGQTVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
           L   + GKI LS+K       +
Sbjct: 61  LSLGEDGKISLSIKKAQPAPQR 82


>gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 489

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I  Q   K+   D     +  S  A +E  +  +R+      +  ++ KG V  +++FG
Sbjct: 166 YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVRKGVVSSIVNFG 225

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++
Sbjct: 226 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQED 284

Query: 694 TGK 696
             +
Sbjct: 285 PWQ 287



 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V++   E T   +++D D   V ++  +  E     +  ++     ++ +I  G
Sbjct: 247 IDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQTFARTHKIGQIVPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FG FV      +GLVH+S+L+T  V     V K GD ++VK++D D +R +I 
Sbjct: 302 KVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRIS 361

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 362 LSLKQANE 369



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVKV      +      +G++   +LS +        VK GD +   +L   D 
Sbjct: 39  DLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLLLSKKRAQ 110


>gi|297198957|ref|ZP_06916354.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
 gi|197711117|gb|EDY55151.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
          Length = 503

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGSD 375



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|163802253|ref|ZP_02196148.1| hypothetical protein 1103602000603_AND4_17714 [Vibrio sp. AND4]
 gi|159174058|gb|EDP58868.1| hypothetical protein AND4_17714 [Vibrio sp. AND4]
          Length = 773

 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMRLSDEP 725


>gi|328471699|gb|EGF42576.1| hypothetical protein VP10329_01050 [Vibrio parahaemolyticus 10329]
          Length = 773

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ-IRNVIG-----MGGK 572
            A +Q   G L I++  + +  ++     E  P V+ +A    + I+ +IG      G  
Sbjct: 545 KAFEQC-AGFLRIMDGKNPL--DASAVHPEAYPVVKAIAEKNSKDIKALIGDSTFLKGLH 601

Query: 573 VIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
            +    E  G     +I  +              A      +     E   I +G V  V
Sbjct: 602 AVDYTDEHFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGVNSVADLEPGMILEGVVSNV 661

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            +FGAFV     +DGLVHIS L+   V+   +VVK GD V VK+++ D  R +I LSM+ 
Sbjct: 662 ANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVMEVDVQRKRIGLSMR- 720

Query: 690 VDQNTGKP 697
           ++   G+ 
Sbjct: 721 LNDEPGQD 728


>gi|302495909|ref|XP_003009968.1| hypothetical protein ARB_03894 [Arthroderma benhamiae CBS 112371]
 gi|291173490|gb|EFE29323.1| hypothetical protein ARB_03894 [Arthroderma benhamiae CBS 112371]
          Length = 1214

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 19/124 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD                +     + D P + KIY G+V  + DFG FV+ 
Sbjct: 219 RSGRNYNYDDDFK--------------KPPASELDDRPILFKIYDGRVTGIKDFGVFVNL 264

Query: 640 CGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            G R   DGLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 QGVRGRVDGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQDS-RIGLSMKEVDQVSG 323

Query: 696 KPIV 699
             + 
Sbjct: 324 HDLA 327


>gi|312958364|ref|ZP_07772885.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
 gi|311287428|gb|EFQ65988.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
          Length = 774

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   V   +  L E+E      R      E               I +G V
Sbjct: 599 --DPKKYTDETFGVPTITDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D+   K
Sbjct: 717 MRMSDEPGEK 726


>gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 388

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D D    + S   A  E  +   + +    +   I  G+V ++ +FGAF+   GA D
Sbjct: 178 IEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGA-D 236

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL HIS+LS +RV    +V+  G  V V +++ D +R +I LS++ +  N    I
Sbjct: 237 GLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLRRLQPNPWDTI 291



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I     + ++  G V  V  FGAFV    A +GL+H S+L  +  A+  D+++ G 
Sbjct: 287 PWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLIHASELDADPQAQPRDLLQPGQ 346

Query: 669 TVWVKLLDFDD-RGKIKLSMK 688
            +  +++  D  R ++ LS++
Sbjct: 347 IITARIISLDKQRQRMGLSLR 367



 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            P+  ++ +G V+K+ D G  V     R+G++ I+ +      +  + +K GD + V + 
Sbjct: 28  RPQRGEVREGVVMKIEDGGILVSIGTKREGIIPIADVRAI-GDEVLNNLKVGDRIQVYVQ 86

Query: 676 DFDDRGK-----IKLSMKVV 690
             D   +     + L+M  V
Sbjct: 87  --DPENRQGDLVLSLTMVQV 104


>gi|56964674|ref|YP_176405.1| general stress protein 13 [Bacillus clausii KSM-K16]
 gi|56910917|dbj|BAD65444.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
           KSM-K16]
          Length = 133

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G+V  +  FGAFV     + GLVHIS+++   V   +DV+  GD V VK++  
Sbjct: 5   EEGSIVEGKVTGIKPFGAFVAIDEKKQGLVHISEVAHGYVKDIADVLAVGDEVKVKIMSV 64

Query: 678 DDR-GKIKLSMKVVDQNTGKP 697
           D+  GKI LS++   +   +P
Sbjct: 65  DEESGKISLSIRATQEAPARP 85


>gi|46121247|ref|XP_385178.1| hypothetical protein FG05002.1 [Gibberella zeae PH-1]
          Length = 1195

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 8/90 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           P+++K+Y+G V  + DFG FV+     G  DGLVH+S++ST +RV   SD+V +G  VWV
Sbjct: 222 PQLHKVYQGHVTGLKDFGCFVNLHNVKGRVDGLVHVSRMSTGQRVNHPSDLVTQGQEVWV 281

Query: 673 KLLDFDD----RGKIKLSMKVVDQNTGKPI 698
           K+   D     R ++ LSMK VDQ  G+ +
Sbjct: 282 KVTSLDKDQNGRDRVGLSMKDVDQQNGQDL 311


>gi|317050911|ref|YP_004112027.1| RNA-binding S1 domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945995|gb|ADU65471.1| RNA binding S1 domain protein [Desulfurispirillum indicum S5]
          Length = 544

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           + + +   +I +  E   + KG+VV  +D+GAFV      +GL+HIS++S   RV   S 
Sbjct: 274 QKSDDPWNNIAERCECGTVVKGKVVSFVDYGAFVEIEPGIEGLIHISEMSWTSRVRSPSQ 333

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V+K GD V V++LD D +  ++ LS++ V  N  
Sbjct: 334 VLKIGDEVEVRILDIDSENRRLSLSLRAVRPNPW 367



 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 567 IGMGGKVIRGIVEQTGAKVN--------IDDDGTVKIASSSLA------EIEAAREMIRS 612
           I  G + +  I E +             I D+  V+I             + A R     
Sbjct: 309 IEPGIEGLIHISEMSWTSRVRSPSQVLKIGDEVEVRILDIDSENRRLSLSLRAVRPNPWD 368

Query: 613 ITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +      V  + KG++  + +FGAF+      DGL+HIS +S  R    S++VK GD V 
Sbjct: 369 VVGERYPVGTVVKGKIKNITEFGAFLGLDEGVDGLIHISDMSWSRSNHPSEIVKVGDEVE 428

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTG 695
            K+L FD ++ ++ L +K +++N  
Sbjct: 429 AKVLAFDREKERLSLGLKQLEENPW 453



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRG 681
             G VV + DFGAFV      +GL+H+S++S +R+ + SDV+  G  +   ++    +  
Sbjct: 466 VSGTVVNLTDFGAFVKLEDGVEGLLHVSEISHDRIERPSDVLSVGQQIEAAVIKMSKEDR 525

Query: 682 KIKLSMKVVDQNTGK 696
           +I LSMK V +   +
Sbjct: 526 RIGLSMKEVGEGGAE 540



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 16/197 (8%)

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
             D  + G  E  +          R   +N         R  L      +  +   P+++
Sbjct: 103 GWDDIVAGFEEGRLFEGTIVDVVNRGFTVNINGV-----RAFLPLSQVDLRQVRDNPEEM 157

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R  +G+ G+            +N+       + S      E   +  + + +      + 
Sbjct: 158 RTYVGLTGQ---------FKVINVSPKRHNVVVSRRAPLEEEKNKAKQQLIEKLVPGSLL 208

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-K 682
            G+V  + ++G F+   G  DGL+HI+ +S  RV+  S V  EGD V V +LDF+ +  +
Sbjct: 209 TGRVKNITEYGVFIDLGGF-DGLLHITDISWGRVSHPSAVFSEGDEVEVVVLDFNPQNER 267

Query: 683 IKLSMKVVDQNTGKPIV 699
           + L  K    +    I 
Sbjct: 268 VSLGYKQKSDDPWNNIA 284


>gi|225017261|ref|ZP_03706453.1| hypothetical protein CLOSTMETH_01187 [Clostridium methylpentosum
           DSM 5476]
 gi|224950036|gb|EEG31245.1| hypothetical protein CLOSTMETH_01187 [Clostridium methylpentosum
           DSM 5476]
          Length = 157

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V KI +G+V  + +FGAF+     + G+VHIS++S   V + +D +KEG+ V VK+
Sbjct: 1   MQLDVGKIVEGKVTGITNFGAFIDLGEGKTGMVHISEVSAGYVKEIADHLKEGEQVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L   D GKI LS+K       +P
Sbjct: 61  LKVGDDGKISLSIKQAQPQAPRP 83


>gi|197334228|ref|YP_002154889.1| protein YhgF [Vibrio fischeri MJ11]
 gi|197315718|gb|ACH65165.1| protein YhgF [Vibrio fischeri MJ11]
          Length = 771

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E+  + +G V  V +FGAFV     +DGLVHIS LS   V+   +VVK GD V 
Sbjct: 640 NTVSDLELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVK 699

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 700 VKVMEVDVQRKRIALSMR-LNDKPGED 725


>gi|254228562|ref|ZP_04921987.1| S1 RNA binding domain protein [Vibrio sp. Ex25]
 gi|151938944|gb|EDN57777.1| S1 RNA binding domain protein [Vibrio sp. Ex25]
          Length = 608

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 12/184 (6%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ-IRNVIG-----MGGK 572
            A +Q   G L I++  + +  ++     E  P V+ +A    + I+ +IG      G  
Sbjct: 380 KAFEQC-AGFLRIMDGKNPL--DASAVHPEAYPVVKAIAEKNSKDIKALIGDSAFLKGLH 436

Query: 573 VIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
            +    E  G     +I  +              A      +     E   I +G V  V
Sbjct: 437 AVDYTDEHFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGVNSVSDLEPGMILEGVVSNV 496

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            +FGAFV     +DGLVHIS L+   V+   +VVK GD V VK+++ D  R +I LSM++
Sbjct: 497 ANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDIVKVKVMEVDVQRKRIGLSMRM 556

Query: 690 VDQN 693
            D+ 
Sbjct: 557 KDEP 560


>gi|20808801|ref|NP_623972.1| hypothetical protein TTE2443 [Thermoanaerobacter tengcongensis MB4]
 gi|20517450|gb|AAM25576.1| Ribosomal protein S1 domains [Thermoanaerobacter tengcongensis MB4]
          Length = 137

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V+ + DFGAF+     + GLVHIS+++   V    D +KE D V VK+L  
Sbjct: 4   EVGDIVEGTVLNITDFGAFIKLPEGKTGLVHISEVANTYVKNIRDFLKENDRVKVKILSM 63

Query: 678 DDRGKIKLSM-KVVDQNTGKP 697
           +  GKI LS+ K + Q T K 
Sbjct: 64  EPNGKISLSIKKAMPQKTPKE 84


>gi|313496609|gb|ADR57975.1| S1 RNA-binding domain-containing protein [Pseudomonas putida
           BIRD-1]
          Length = 774

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 10/185 (5%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIR---- 575
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDPK 601

Query: 576 GIVEQTG---AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
              ++T       +I  +              A  +         E   I +G V  V +
Sbjct: 602 KFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTN 661

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ D  R ++ LSM++ D
Sbjct: 662 FGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSD 721

Query: 692 QNTGK 696
               K
Sbjct: 722 TPGEK 726


>gi|254282959|ref|ZP_04957927.1| ribosomal protein S1 [gamma proteobacterium NOR51-B]
 gi|219679162|gb|EED35511.1| ribosomal protein S1 [gamma proteobacterium NOR51-B]
          Length = 557

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      +   +  A    +     I  ++    +    
Sbjct: 66  DEVQVALETVEDGFGETKLSREKAKRAEAWKRLEAAHAADEVVTGIINGKVKGGFTVDID 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      I    IR    +  K +   V +   K N      V ++  ++ E  
Sbjct: 126 SIRAFLPGSL---IDVRPIRETAHLENKDLEFKVIKLDQKRN-----NVVVSRRAVMEAA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V
Sbjct: 178 NSAEREELLESLQEGMAV-KGVVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + G  + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 EVGQELDVKILKFDRERNRVSLGLKQLGEDPWVEI 270



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT+        K +V  + D+G F       +GLVH+S++    +    S +V+ 
Sbjct: 265 DPWVEITNRYPEGSRVKARVTNLTDYGCFAEIEEGVEGLVHVSEMDWTNKNVHPSKIVQL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D +R +I L +K   QN  
Sbjct: 325 GDEVEVMVLDIDEERRRISLGIKQCTQNPW 354



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G V +V   GA +      DG + +S L+ ERV     V+  GD+V  K++  D + 
Sbjct: 453 IVVGTVTEVDGRGALIKLSDEVDGYLKVSDLARERVEDARSVLNVGDSVEAKIISVDRKT 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + + LS+K  D +  K  V
Sbjct: 513 RALGLSIKAKDMDDEKEAV 531



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 91/260 (35%), Gaps = 46/260 (17%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +  +     +   I+     
Sbjct: 197 GVVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVEVGQE-----LDVKILKF--- 248

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +  +++    P    +      + +      I  G + +  +
Sbjct: 249 --DRERNRVSLGLKQLGEDPWVEITNRYPEGSRVKARVTNLTDYGCFAEIEEGVEGLVHV 306

Query: 578 VEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            E                        ++ID++                +    +      
Sbjct: 307 SEMDWTNKNVHPSKIVQLGDEVEVMVLDIDEERRRISLGIKQCT----QNPWDAFASEHS 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                 G +  + DFG F+   G  DGLVH+S +S   V    + V   K+GD +   +L
Sbjct: 363 KGDRISGTIKSITDFGIFIGLEGNIDGLVHLSDISWNEVG--EEAVRNYKKGDEIETVIL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++++ 
Sbjct: 421 SIDPERERISLGVKQLEEDA 440


>gi|27366257|ref|NP_761785.1| 30S ribosomal protein S1 [Vibrio vulnificus CMCP6]
 gi|27362458|gb|AAO11312.1| ribosomal protein S1 [Vibrio vulnificus CMCP6]
          Length = 556

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +  E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 STVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEETVREFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV   + ++  G
Sbjct: 439 DPFNAYVADNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRVEDATLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529


>gi|270158185|ref|ZP_06186842.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289163556|ref|YP_003453694.1| transcriptional accessory protein [Legionella longbeachae NSW150]
 gi|269990210|gb|EEZ96464.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288856729|emb|CBJ10540.1| transcriptional accessory protein [Legionella longbeachae NSW150]
          Length = 781

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 28/250 (11%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           A+G+  +     +LS ISG  + L   +  +   + G    +M++K  G    +   A Q
Sbjct: 492 AVGVDVNTASAALLSHISGLNETLAK-NIVLYRDEHGAFKNRMELKNVG---RMGEKAFQ 547

Query: 523 QAKRGRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           QA  G L I+N  + + +     +      ++  +A     I+N+IG   ++     EQ 
Sbjct: 548 QA-AGFLRIMNGDNPLDASCVHPEAYPLVEKI--IANKKVDIKNLIGNKEQLRSVNAEQF 604

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA-------------REMIRSITDVPEVNKIYKGQVV 628
                +D+   +      L+E+E               +E I  I  + E   I +G V 
Sbjct: 605 -----VDEQFGLPTIKDVLSELEKPGRDPRPEFKTAQFKEGIEDIEHLQEG-MILEGVVS 658

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V +FGAF+     +DGLVHIS ++ + ++    VVK GD V VK+++ D +R +I LSM
Sbjct: 659 NVTNFGAFIDIGVHQDGLVHISAMTHKFISDPRTVVKAGDIVTVKVVEIDKERKRIGLSM 718

Query: 688 KVVDQNTGKP 697
           K+ D+    P
Sbjct: 719 KLEDEPLSTP 728


>gi|262392648|ref|YP_003284502.1| transcription accessory protein [Vibrio sp. Ex25]
 gi|262336242|gb|ACY50037.1| transcription accessory protein [Vibrio sp. Ex25]
          Length = 773

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 12/184 (6%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ-IRNVIG-----MGGK 572
            A +Q   G L I++  + +  ++     E  P V+ +A    + I+ +IG      G  
Sbjct: 545 KAFEQC-AGFLRIMDGKNPL--DASAVHPEAYPVVKAIAEKNSKDIKALIGDSAFLKGLH 601

Query: 573 VIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
            +    E  G     +I  +              A      +     E   I +G V  V
Sbjct: 602 AVDYTDEHFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGVNSVSDLEPGMILEGVVSNV 661

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            +FGAFV     +DGLVHIS L+   V+   +VVK GD V VK+++ D  R +I LSM++
Sbjct: 662 ANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDIVKVKVMEVDVQRKRIGLSMRM 721

Query: 690 VDQN 693
            D+ 
Sbjct: 722 KDEP 725


>gi|239940449|ref|ZP_04692386.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
 gi|239986932|ref|ZP_04707596.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 11379]
 gi|291443880|ref|ZP_06583270.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
 gi|291346827|gb|EFE73731.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
          Length = 504

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTG 695
           LS+K  +++ G
Sbjct: 363 LSLKQANESFG 373



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VVK GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|182439327|ref|YP_001827046.1| 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326779979|ref|ZP_08239244.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|178467843|dbj|BAG22363.1| putative 30S ribosomal protein S1 [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660312|gb|EGE45158.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 505

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTG 695
           LS+K  +++ G
Sbjct: 363 LSLKQANESFG 373



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VVK GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|156972940|ref|YP_001443847.1| transcriptional accessory protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524534|gb|ABU69620.1| hypothetical protein VIBHAR_00618 [Vibrio harveyi ATCC BAA-1116]
          Length = 766

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 636 NSVSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 695

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 696 VKVMEVDVQRKRIGLSMR-LNDEPGQD 721


>gi|27528790|emb|CAD29620.1| hypothetical protein [Streptomyces olivaceoviridis]
          Length = 180

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 22/179 (12%)

Query: 380 FLPCATGEVS----RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
            LP AT          G    R     RL  R++  V+   A    T+ +  ++ ++DG 
Sbjct: 1   MLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVVDYKALGENTIVLDCDVLQADGG 60

Query: 436 SSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +  A + G+ +AL DA               PI+  V+ +++G+V      + L D+  +
Sbjct: 61  TRTAAITGAYVALADAVAWAQGKKLIRAGRKPITGTVSAVSVGIV----GGVPLLDLCYE 116

Query: 483 EDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           ED     D  V  T  G    +Q   +    + + +   L  A  G   +    +K L 
Sbjct: 117 EDVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVSGCTELAALQTKALD 175



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 21/165 (12%)

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMVAASAAL 138
             R       ISR+I RS+R +       E  ++   +V+Q D        ++  A  AL
Sbjct: 16  RGRIGGRTHEISRLIGRSLRAVVDYKALGENTIVLDCDVLQADGG--TRTAAITGAYVAL 73

Query: 139 MLS-------------GLPFEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA 184
             +               P  G V    V  + G  +L+   +ED +   D+ V  T D 
Sbjct: 74  ADAVAWAQGKKLIRAGRKPITGTVSAVSVGIVGGVPLLDLCYEEDVKADTDMNVVCTGDG 133

Query: 185 -VLMVEL--EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             + V+   EA   + D +   +    + C  +    +K     A
Sbjct: 134 RFVEVQGTAEAEPFARDELNALLDLAVSGCTELAALQTKALDTVA 178


>gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209]
 gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209]
          Length = 504

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +RS   +  E  ++  G V  +++FG
Sbjct: 182 YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFG 241

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 242 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDLDRERVSLSLKATQED 300

Query: 694 TGK 696
             +
Sbjct: 301 PWQ 303



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 300 DPWQTFARTHALGQVVPGRVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVG 359

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K  ++
Sbjct: 360 DELFVKVIDIDLERRRISLSLKQANE 385



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVKV      +      +G++   +LS +     S+VV  GD V   +L   D 
Sbjct: 55  DLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVLTKEDK 114

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 115 EGRLILSKKRAQ 126


>gi|134298001|ref|YP_001111497.1| RNA-binding S1 domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134050701|gb|ABO48672.1| RNA binding S1 domain protein [Desulfotomaculum reducens MI-1]
          Length = 126

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 46/79 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + +FGAFV   G + GLVHIS+++   V   ++ +K  D V V+++  
Sbjct: 4   EQGSIVEGIVTGITNFGAFVELPGGQTGLVHISEVAEVYVKDINEFLKVNDKVKVRIISV 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           D +GKI LS+K  + +  +
Sbjct: 64  DPKGKIGLSIKQANPSANR 82


>gi|148264302|ref|YP_001231008.1| RNA-binding S1 domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146397802|gb|ABQ26435.1| RNA binding S1 domain protein [Geobacter uraniireducens Rf4]
          Length = 757

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++              A      +     +   I +G V  V  FGAFV     +DG
Sbjct: 615 DILEELKKPGRDPRAQFQTATLREDVTELGDLQEGMILQGTVTNVTAFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           LVH+S L+   V   ++ VK G  V VK+L  D  R +I LS+K  +   G
Sbjct: 675 LVHVSHLAQRFVKDPNEAVKVGQIVKVKVLSVDLQRKRIALSIKEAEPANG 725


>gi|37679484|ref|NP_934093.1| 30S ribosomal protein S1 [Vibrio vulnificus YJ016]
 gi|320156766|ref|YP_004189145.1| 30S ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
 gi|37198228|dbj|BAC94064.1| ribosomal protein S1 [Vibrio vulnificus YJ016]
 gi|319932078|gb|ADV86942.1| SSU ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
          Length = 556

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVVGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    IR+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPIRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           +  E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 STVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 236 NVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 275 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 333

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 334 EIDEERRRISLGLKQCKANPWQ 355



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 316 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREFKKGDEISAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 421 AVDAERERISLGIKQMENDP 440



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV   + ++  G
Sbjct: 439 DPFNAYVADNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRVEDATLILSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQE 529


>gi|89099121|ref|ZP_01172000.1| 30S ribosomal protein S1 [Bacillus sp. NRRL B-14911]
 gi|89086251|gb|EAR65373.1| 30S ribosomal protein S1 [Bacillus sp. NRRL B-14911]
          Length = 385

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   D    ++  S  A +E  +   +       + +++  G + ++ DFGAFV   G 
Sbjct: 157 KIVELDKEKNRLILSHRAVVEEEKGRQKQDILANLQADQVLDGTIQRITDFGAFVDI-GG 215

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            DGLVHISQLS E V K SDVV+EG  V VK+L  D D  +I LS+K         I 
Sbjct: 216 IDGLVHISQLSYEHVEKPSDVVEEGQKVQVKVLSVDRDNERISLSIKETLPGPWSDIA 273



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +         G V +++ +GAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 268 PWSDIAEKAPKGSTLDGVVRRLVSYGAFVEVFPGVEGLVHISQISHKHIGTPHEVLEEGQ 327

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
            V VK+LD ++   ++ LS+K +++   +
Sbjct: 328 QVQVKVLDVNENDQRLSLSIKDLEEKEAE 356



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERV 657
              E+  + EM        EV      +V KV +    V    ++ DG++ IS+LS+  +
Sbjct: 1   MSEEMNQSEEMNSIEVKNFEVGDRVTAKVTKVEEKQVVVDIQDSKLDGIIPISELSSLHI 60

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            K  D V EGD + +++L  ++   I LS + VD
Sbjct: 61  EKAEDAVAEGDELDLEVLKVEEEALI-LSKRKVD 93


>gi|148545516|ref|YP_001265618.1| RNA-binding S1 domain-containing protein [Pseudomonas putida F1]
 gi|148509574|gb|ABQ76434.1| RNA binding S1 domain protein [Pseudomonas putida F1]
          Length = 774

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 10/185 (5%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIR---- 575
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDPK 601

Query: 576 GIVEQTG---AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
              ++T       +I  +              A  +         E   I +G V  V +
Sbjct: 602 KFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTN 661

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS + V    + VK GD V VK+++ D  R ++ LSM++ D
Sbjct: 662 FGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSD 721

Query: 692 QNTGK 696
               K
Sbjct: 722 TPGEK 726


>gi|330825776|ref|YP_004389079.1| Tex-like protein [Alicycliphilus denitrificans K601]
 gi|329311148|gb|AEB85563.1| Tex-like protein [Alicycliphilus denitrificans K601]
          Length = 794

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+ E   + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G
Sbjct: 661 EGVEEITDLKEG-MVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVQDAREVVKTG 719

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D V VK+L+ D  RG+I LSMK +D    +
Sbjct: 720 DIVKVKVLEVDVARGRISLSMK-LDAAPAR 748


>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 487

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 574 IRGIVEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVV 628
           +R +    G K+       D     +  S  A +E  +  +RS   +     ++ KG V 
Sbjct: 161 VRDLQPYVGRKIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLARGQVRKGVVS 220

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+
Sbjct: 221 SVVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSL 279

Query: 688 KVVDQNTGK 696
           K   ++  +
Sbjct: 280 KATQEDPWR 288



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + +I  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQE-----DPWRLYARTHAIGQIVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+ GD   VK++D D DR +I 
Sbjct: 303 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDDAMVKVIDIDLDRRRIS 362

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 363 LSLKQANE 370


>gi|307326059|ref|ZP_07605257.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306888281|gb|EFN19269.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 504

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VV  GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|163748940|ref|ZP_02156191.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
 gi|161331316|gb|EDQ02204.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
          Length = 555

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            H+         G T +  +      +  ++  A + A+     I  ++    +     +
Sbjct: 68  VHVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGVINGKVKGGFTVELNGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   +  K +   V +   K N      V ++  ++ E E++
Sbjct: 128 RAFLPGSL---VDVRPVRDTAHLENKDLEFKVIKLDQKRN-----NVVVSRRAVIESESS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E   I KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 180 AERDALLENLQEGQSI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 GDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    ++ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQSIKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKSNPWDD 356



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V+ V   G  V      +G + +S +S ER+   S V   G
Sbjct: 439 DPFNAYLSDKKKGAVVNGTVIAVDAKGVTVQLAETVEGYLRVSDISRERIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D +  K +  D + + I LS+K  D+   K 
Sbjct: 499 DAIEAKFMGVDRKNRTISLSIKAKDEAEEKE 529



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 124/359 (34%), Gaps = 60/359 (16%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +  Q   
Sbjct: 112 INGKVKGGFTVELNGIRAFLPGSLVDVRPVRDT-------AHLENKDLEFKVIKLDQKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + ES+ S+    +    L  +  G  I         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIESESSAERDAL----LENLQEGQSIK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR--LHILNEM 535
            G +   H+  M +K     S I  +        I   ++    ++ +       +  + 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVG-----DEIDVKVLKYDRERTRVSLGLKQLGEDP 266

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------- 585
              +S+   +    T RV  +      +    G+ G V    ++ T   +          
Sbjct: 267 WLEISKRYPENTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGD 326

Query: 586 -------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
                  +ID++           +            +         G++  + DFG F+ 
Sbjct: 327 EVEVLVLDIDEERRRISLGLKQCKSN----PWDDFAERFNKGDKVTGKIKSITDFGIFIG 382

Query: 639 FCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S         +D  K+GD +   +L  D +R +I L +K  + + 
Sbjct: 383 LDGGIDGLVHLSDISWNGTGEEAVADY-KKGDEIHAVVLSVDPERERISLGVKQTEDDP 440


>gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680]
 gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680]
          Length = 501

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTG 695
           LS+K  ++  G
Sbjct: 363 LSLKQANEAFG 373



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|89094100|ref|ZP_01167043.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
 gi|89081575|gb|EAR60804.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
          Length = 563

 Score = 93.8 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 115/261 (44%), Gaps = 15/261 (5%)

Query: 441 VCGSSLALMDAGVPISKPVAGIAM-GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           V G+ +A+ D  V ++   AG+   G++          D++ D      +  +      G
Sbjct: 24  VSGTVVAIEDDYVIVN---AGLKSEGIIPKSQFLDENGDLTIDVGSEVKVALEAVEDGFG 80

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
            T +  D      +   +  A +  +    +I  ++    + +   +  F P      + 
Sbjct: 81  TTQLSRDKAKRAEAWIELEKAYEADEIVTGNITGKVRGGFTVNVNTIHAFLPGSL---VD 137

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              +R+   +  + +   + +  AK N      + ++  ++ E   + E  + + ++ E 
Sbjct: 138 VRPLRDTSHLENQELEFKLVKLDAKRN-----NIVVSRRAVLEAAYSEEREKLLANLKEG 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            K+ KG V  + D+GAF+   G  DGL+HI+ ++ +RV   S+ +K G+ + V++L FD 
Sbjct: 193 LKV-KGIVKNITDYGAFIDL-GGVDGLLHITDIAWKRVKHPSEALKVGEEIDVQVLRFDK 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L MK + ++    ++
Sbjct: 251 ERNRVSLGMKQLSEDPWTQLI 271



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           K +V  + D+G F       +GL+H+S++    +    S VV+ GD V V LLD D +R 
Sbjct: 281 KAKVTNLTDYGCFAEIENGIEGLIHVSEMDWTNKNVHPSKVVQVGDMVDVMLLDIDMERR 340

Query: 682 KIKLSMKVVDQNTG 695
           +I L MK    N  
Sbjct: 341 RISLGMKQCKPNPW 354



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                +   +      G +  + DFG F+   G  DGLVH+S LS E+     +VV   K
Sbjct: 353 PWNEFSSKFDKGDKITGSIRSITDFGVFIGLDGGIDGLVHLSDLSWEQPG--EEVVKSYK 410

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +L  D +R +I L +K +D + 
Sbjct: 411 KGDEVEAVVLSVDAERERIALGIKQLDSDP 440



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T V     I KGQV  V D    V      +  + I+ +S +R+   S+    G
Sbjct: 439 DPFVNFTSVNAKGSIVKGQVSNVTDKALSVTLAEGVEASLKIADVSRDRIDNLSERFTVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V   + + D R + I LS+K ++    K
Sbjct: 499 DEVEAVISNIDRRNRVITLSIKQLEIEQEK 528


>gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 503

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTG 695
           LS+K  ++  G
Sbjct: 363 LSLKQANEAFG 373



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VVK GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
 gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
          Length = 503

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 363 LSLKQANESFGAD 375



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VVK GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
          Length = 500

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VV  GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|229820681|ref|YP_002882207.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566594|gb|ACQ80445.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
          Length = 488

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 31/268 (11%)

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
             +A I   +    D  I+   I   +     +D  +     G+   +       +    
Sbjct: 24  DFLAAIDETIKYFNDGDIVEGTIVKVDRDEVLLD--IGYKTEGVILSRELSIKHDVDPEE 81

Query: 517 MVMALQQAKRGRLHILNEMSKVL-SESRLQLGEFTPRVEIMA------------IPPDQI 563
           +V   ++ +   L   ++  ++L S+ R Q       +E +             +    +
Sbjct: 82  VVSVGERVEALVLQKEDKEGRLLLSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGL 141

Query: 564 RNVIGMGGKVIRGIVE-------------QTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
              IG+ G +   +VE             +  AK+   D     +  S  A +E  +  +
Sbjct: 142 ILDIGLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEV 201

Query: 611 RSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           RS      +  +I  G V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  
Sbjct: 202 RSTFLATLQKGQIRNGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQE 260

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V V++LD + DR ++ LS+K   ++  +
Sbjct: 261 VTVEVLDVELDRERVSLSLKATQEDPWQ 288



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   ++++ D   V ++  +  E     +  +       + ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVELDRERVSLSLKATQE-----DPWQQFARTHAIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     V K G+ V+VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 363 LSLKQANE 370



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T  +V I+D G+         +  AA +      +      I +G +VKV      +   
Sbjct: 10  TTPQVAINDIGS-------AEDFLAAIDETIKYFND---GDIVEGTIVKVDRDEVLLDIG 59

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +      +VV  G+ V   +L   D  G++ LS K   
Sbjct: 60  YKTEGVILSRELSIKHDVDPEEVVSVGERVEALVLQKEDKEGRLLLSKKRAQ 111


>gi|81428628|ref|YP_395628.1| 30S ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610270|emb|CAI55319.1| 30S Ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
          Length = 403

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 2/116 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S      +  +  ++++ +      I +G+V ++ +FGAFV   G  D
Sbjct: 170 IEIEPSENRLILSRKALVEQERQAQLKAVFEKLLPGDIVEGEVARLTNFGAFVDL-GGVD 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GLVH+S++S + + + SDV++ G  V VK+L  D ++G+I LS+K         I 
Sbjct: 229 GLVHVSEISYDHINQPSDVLEVGQNVKVKILSLDQEKGRISLSIKDTQPGPWDDIA 284



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V    +G V ++  FGAFV      +GLVHISQ+S + +A  +DV++EG 
Sbjct: 279 PWDDIAEKAPVGSTLEGTVKRLTTFGAFVEVFPGVEGLVHISQISHQHIATPNDVLEEGQ 338

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           TV VK+L  D ++ ++ LS+K + +   
Sbjct: 339 TVQVKVLSVDPEQQRLGLSIKALQEKPA 366


>gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
 gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
          Length = 502

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +R+      +  ++  G V  +++FGAFV
Sbjct: 169 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQKGQVRSGVVSSIVNFGAFV 228

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ GD V V++LD D DR ++ LS+K   ++  +
Sbjct: 229 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQ 287



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FG+FV      +GLVHIS+L+   V     VV  G
Sbjct: 284 DPWQHFARTHAIGQVVPGKVTKLVPFGSFVRVEDGIEGLVHISELAERHVELPEQVVTVG 343

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             ++VK++D D +R +I LS+K  +++
Sbjct: 344 ADIFVKVIDIDLERRRISLSLKQANED 370



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE T  ++ I+D G+         ++ AA +      +      I +G +VKV      +
Sbjct: 6   VETTAPQIAINDIGS-------EEDLLAAIDATIKHFND---GDIVEGIIVKVDRDEVLL 55

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
                 +G++   +LS +     ++VVK GD V   +L   D  G++ LS K   
Sbjct: 56  DIGYKTEGVIPSRELSIKHDIDPNEVVKVGDEVEALVLQKEDKEGRLILSKKRAQ 110


>gi|282862064|ref|ZP_06271127.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
 gi|282563089|gb|EFB68628.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
          Length = 504

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTG 695
           LS+K  ++  G
Sbjct: 363 LSLKQANEAFG 373



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VVK GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
 gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
          Length = 497

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 363 LSLKQANESFGSD 375



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|118107064|ref|XP_423195.2| PREDICTED: similar to DHX8 protein [Gallus gallus]
          Length = 720

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 189 KHVDRPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 248

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ+TG+ +
Sbjct: 249 VVSKGQRVKVKVLSFTGS-KTSLSMKDVDQDTGEDL 283


>gi|226312030|ref|YP_002771924.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
 gi|226094978|dbj|BAH43420.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
          Length = 389

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D +    I S      +  +   +SI D  +V ++ +G V ++ DFG FV   G  D
Sbjct: 155 VEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVLEGTVQRMTDFGVFVDI-GGVD 213

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GLVH+S+L+  RV K SDVVKEGD V VK+L  D +  +I LS+K         + 
Sbjct: 214 GLVHVSELAWNRVDKPSDVVKEGDKVKVKVLKIDRENERIGLSIKETQAGPWASVA 269



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 12/135 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            D+  +V+  G KV   +      K++ +++        + A          S+ +  + 
Sbjct: 226 VDKPSDVVKEGDKVKVKV-----LKIDRENERIGLSIKETQAG------PWASVAEDFKA 274

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             I  G V +++ FGAF+      +GLVHISQ++  RV   S+V+KEG  V VK+LD   
Sbjct: 275 GSILNGTVKRLVSFGAFIELAPGIEGLVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVP 334

Query: 680 RG-KIKLSMKVVDQN 693
           +  +I LS++ V+++
Sbjct: 335 QEQRISLSIRAVEED 349



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           V  + K  V KV D  A V      DGL+ IS+LS   V K SDVV  GDT  VK++   
Sbjct: 16  VGDVVKATVTKVEDKQALVDLGYKYDGLIPISELSPLHVEKVSDVVAVGDTFEVKVIKLN 75

Query: 678 DDRGKIKLSMKVV 690
           D++ ++ +S K V
Sbjct: 76  DEKEELVVSKKAV 88


>gi|170754879|ref|YP_001781355.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum B1 str. Okra]
 gi|169120091|gb|ACA43927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum B1 str. Okra]
          Length = 638

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 14/220 (6%)

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           GDE     +  K    + G   + +       +   +  A +  +  ++ + + +   L 
Sbjct: 350 GDEIEAKIVRIK---NEDGYVVLSLKELHREKALKNLKEAFENKQTIKVIVKDAVDAGLI 406

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
                +  F P   I     D +    G+  +V   I+E       I D    KI  S  
Sbjct: 407 CIYNGVRVFIPASHIELSHVDDLEAYKGLELEV--NIIE------FIKDRYRTKIVGSRR 458

Query: 601 AEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             ++  R      T    E + + +G+V +  DFGAF+      DGL+H+S++S  RV K
Sbjct: 459 NILKTVRNKHIEETWNSLEKDTVVEGEVKRFTDFGAFIEI-NGVDGLLHVSEISWGRVEK 517

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             D +K G+ + V +LD D +  K+ LS+K + ++  K +
Sbjct: 518 PEDALKIGNKIKVYILDIDKENKKLALSIKKLIEDPWKSV 557



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +S+     +  I  G+VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G
Sbjct: 552 DPWKSVEIKYPIGNIVLGKVVRFANFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLG 611

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQ 692
             V  K+L+ +    +I LS+K V++
Sbjct: 612 KEVKAKILEVNSVEKRIALSIKDVEE 637



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       S            +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAINKMNNND-------SIIEVSKNEMLNYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++ +  +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLNYKSEGIIPKEEVTLDEESILKESFKVGDEIEAKIVRIKN 362

Query: 679 DRGKIKLSMKVV 690
           + G + LS+K +
Sbjct: 363 EDGYVVLSLKEL 374


>gi|328552793|gb|AEB23285.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens TA208]
          Length = 378

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +  IV      V +D D    I S      +             
Sbjct: 128 VEAHFVEDFTDYKGKTLSLIV------VELDRDKNRVILSHRAVVEKEQTAKKHDFLQTL 181

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 182 EVGSVLEGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSV 240

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K         I
Sbjct: 241 DRDNERISLSIKETLPGPWSQI 262



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 258 PWSQIGEKVKQGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQ 317

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           TV VK+LD ++   +I LSM+ +++  
Sbjct: 318 TVKVKVLDVNESEERISLSMRELEEAP 344



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV  
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVNV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|319441361|ref|ZP_07990517.1| putative transcriptional accessory protein [Corynebacterium
           variabile DSM 44702]
          Length = 791

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                    AA               + +G V  V  FGAFV     +DGLVH+S ++  
Sbjct: 633 RDPRPEFRTAALAEGIEKISDLTPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMAER 692

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           RV    +VV+ G  V VK+++ D +R +I LS+++ D+  GKP
Sbjct: 693 RVNDPHEVVRTGQVVKVKVMEVDVERQRIGLSLRLTDE-PGKP 734


>gi|288941833|ref|YP_003444073.1| Tex-like protein-like protein [Allochromatium vinosum DSM 180]
 gi|288897205|gb|ADC63041.1| Tex-like protein protein-like protein [Allochromatium vinosum DSM
           180]
          Length = 781

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  V +FGAFV     +DGLVHIS LS   V    +VVK GD V VK+L+ 
Sbjct: 646 EPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISVLSDRFVKDPHEVVKSGDLVKVKVLEV 705

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +R +I LS + +D+   +
Sbjct: 706 DLERKRIALSRR-LDEPAER 724


>gi|238020739|ref|ZP_04601165.1| hypothetical protein GCWU000324_00629 [Kingella oralis ATCC 51147]
 gi|237867719|gb|EEP68725.1| hypothetical protein GCWU000324_00629 [Kingella oralis ATCC 51147]
          Length = 765

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA        +  +V  + +G V  V +FGAFV     +DG
Sbjct: 604 DILAELEKPGRDPRGEFQTAAFAEGVHDMNDLQVGMVLEGVVSNVANFGAFVDIGVHQDG 663

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS L+   V    DVVK GD V VK+L+ D  R +I L+M++ D+   +
Sbjct: 664 LVHISALADRFVQDPRDVVKAGDVVKVKVLEVDVPRKRIALTMRLNDEAGAE 715


>gi|119572065|gb|EAW51680.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_e [Homo
           sapiens]
          Length = 1169

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|295102762|emb|CBL00307.1| Ribosomal protein S1 [Faecalibacterium prausnitzii L2-6]
          Length = 360

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +ID +          AE          + +   +   +   VV +  FGAFV      DG
Sbjct: 253 DIDTENHKVSLGYKKAEDN----PWEQLKNNYPIGSTFHAPVVSLTKFGAFVRILPGVDG 308

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS++S +RV K SD +K GD V VKLLD D D+ +I LSMK +  +  +
Sbjct: 309 LVHISEISNDRVEKVSDALKVGDMVDVKLLDVDFDKKRISLSMKALLNDDAE 360



 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G+  +             +  A +  +     +       +  +  
Sbjct: 74  DELDLIVEKVMDQDGVIQLSRKKLASRKGMEEIAKAAESGEVVEGDVTEFNKGGVVVNVK 133

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F PR +      +    ++G   +++  + E +G K+       V   +   AE  
Sbjct: 134 GVKVFVPRSQATMRRDEDYTALVGQHVQLV--VTECSGRKI-------VGSINKVTAEQN 184

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+          EV K Y G V  +  +GAFV   G  DGL HIS+LS  R+   S+VV
Sbjct: 185 KAK--REEFWASVEVGKTYTGVVKSLTSYGAFVDI-GGVDGLCHISELSWNRIKHPSEVV 241

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GDT+ V + D D +  K+ L  K  + N  + +
Sbjct: 242 SVGDTIEVYVKDIDTENHKVSLGYKKAEDNPWEQL 276



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +++     +     +  S         I KG V  +      V     + G V +S+L+ 
Sbjct: 1   MSAEINDSMSFEEMLNASEEKRVHAGSIVKGIVTSISANEIQVDIGAKQTGFVKLSELTD 60

Query: 655 ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV 690
           +  AK  D+VK GD + + +    D  G I+LS K +
Sbjct: 61  DSSAKVEDLVKVGDELDLIVEKVMDQDGVIQLSRKKL 97


>gi|237653696|ref|YP_002890010.1| 30S ribosomal protein S1 [Thauera sp. MZ1T]
 gi|237624943|gb|ACR01633.1| ribosomal protein S1 [Thauera sp. MZ1T]
          Length = 567

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+         G T +  D      + N +  AL +    +  I   +   L+    
Sbjct: 73  DFVHVAIDALEDGYGETRLSRDKAKRIAAWNDLEKALNEGTLVKGVITGRVKGGLTVMTN 132

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK     V +   K N   +  V   +     + 
Sbjct: 133 SIRAFLPGSLVDMRP---VKDTTPYEGKEYEFKVIKLDRKRN---NVVVSRRAVLEESMG 186

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             RE + +     +   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 187 EEREKLLAN---LKEGTVIKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVL 242

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GD +  K+L FD ++ ++ L +K + ++  
Sbjct: 243 SVGDEIEAKVLKFDQEKNRVSLGLKQLGEDPW 274



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VV+ GD V V +L+ D DR +
Sbjct: 289 GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRR 348

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 349 ISLGMKQCMSNPWDD 363



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P +   V+ +G +V   I+E       ID+D                           
Sbjct: 323 IHPTK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQCMSN----PWDDFAINH 368

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           +     +GQ+  + DFG F+   G  DGLVH+S LS        D V   K+GD V   +
Sbjct: 369 KKGDKVRGQIKSITDFGVFIGLEGGIDGLVHLSDLSWS--ESGEDAVRRFKKGDEVEAVV 426

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 427 LAIDVERERISLGIKQLEGDP 447



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     E N + +G V  V   GA +      +G +  S+ +  RV   + + KEG
Sbjct: 446 DPYTNFIATHEKNSLVRGTVKSVEARGAVISLGDDVEGYLRASEAAPHRVDDLTTMFKEG 505

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D V   +++ D + + I LS++  DQ
Sbjct: 506 DEVEALVINVDRKTRSISLSIRAKDQ 531


>gi|225027342|ref|ZP_03716534.1| hypothetical protein EUBHAL_01598 [Eubacterium hallii DSM 3353]
 gi|224955344|gb|EEG36553.1| hypothetical protein EUBHAL_01598 [Eubacterium hallii DSM 3353]
          Length = 241

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +  D +    + S      +  R    +  +  E   +  G+V  +M +GAFV       
Sbjct: 100 ITADPEKNRLVLSVKEVLYDKKRAEKEARINAIEAGAVLTGKVESLMPYGAFVDLGNDIS 159

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           GLVHISQ++ +R+   ++V+K G  V VK+L   + GKI LSMK +++   + 
Sbjct: 160 GLVHISQIAQKRIESPAEVLKAGQEVNVKVLKV-ENGKISLSMKALEEVAPEE 211


>gi|254507323|ref|ZP_05119459.1| S1 RNA binding domain protein [Vibrio parahaemolyticus 16]
 gi|219549783|gb|EED26772.1| S1 RNA binding domain protein [Vibrio parahaemolyticus 16]
          Length = 776

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   + +G V  V +FGAFV     +DGLVHIS L+ + VA   +VVK GD V 
Sbjct: 643 NSVSDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKYVADPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMRLTDEP 725


>gi|163748835|ref|ZP_02156087.1| hypothetical protein KT99_02837 [Shewanella benthica KT99]
 gi|161331609|gb|EDQ02414.1| hypothetical protein KT99_02837 [Shewanella benthica KT99]
          Length = 790

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  + + I +G V  V +FGAFV     +DGLVHIS L+ + V+    +VK GD V 
Sbjct: 661 EKVNHLKPDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTLVKAGDVVK 720

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D +R +I L+M++ ++   KP
Sbjct: 721 VKVMEIDVERKRIALTMRLDEKAADKP 747


>gi|320033565|gb|EFW15512.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Coccidioides posadasii str. Silveira]
          Length = 1225

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---D 644
           DD    +       +    R     + + P + K+Y G+V  + DFGAFV+  G R   D
Sbjct: 226 DDYKDRRGRRGRDDDDYFRRPPTPELDERPILYKVYDGRVTGIKDFGAFVNLQGVRGKVD 285

Query: 645 GLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           GLVH+S +    RV   SD+V     V VK++      +I LSMK VDQ TG+ +V
Sbjct: 286 GLVHVSAMQDGARVNHPSDLVSRAQPVKVKVVSIQGS-RIGLSMKEVDQVTGRDLV 340


>gi|262166725|ref|ZP_06034462.1| transcription accessory protein [Vibrio mimicus VM223]
 gi|262026441|gb|EEY45109.1| transcription accessory protein [Vibrio mimicus VM223]
          Length = 773

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGMVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVKRKRIALSMR-LNDEPGQD 728


>gi|197284609|ref|YP_002150481.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
 gi|227356792|ref|ZP_03841177.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
 gi|194682096|emb|CAR41670.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
 gi|227163082|gb|EEI48017.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
          Length = 557

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 19/254 (7%)

Query: 461 GIAMGLVKDGDDFIILSDI-SGDEDHLGHMDFKVAGTDSGI-----TAMQMDMKIGGISE 514
            I  G+V   D  ++L D     E  +    FK A  +  I       + +D    G  E
Sbjct: 22  AIVRGVVVAIDKDVVLVDAGLKSESAIPVEQFKNAQGELEIQVGDEIDVALDAVEDGFGE 81

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQL------GEFTPRVEIM-AIPPDQIRNVI 567
            ++  + ++AKR    ++ E +   +E+ + +      G FT  +  + A  P  + +V 
Sbjct: 82  TVL--SREKAKRHEAWLMLEKAYEENETVVGIINGKVKGGFTVELNGIRAFLPGSLVDVR 139

Query: 568 GMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
            +         E     + +D     V ++  ++ E E + E  + + ++ E  ++ KG 
Sbjct: 140 PVRDTTHLENKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEV-KGI 198

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R ++ L
Sbjct: 199 VKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257

Query: 686 SMKVVDQNTGKPIV 699
            +K + ++    I 
Sbjct: 258 GLKQLGEDPWVAIA 271



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKAN----PWQQFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLSEDP 440



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  V   GA V      +G +  S+ S +RV   + V+  GD V  K    D + 
Sbjct: 453 IVSGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLNVGDAVEAKYTGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS++  D+   K  +
Sbjct: 513 RVINLSVRAKDEADEKDAI 531



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D+ R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKANPWQ 355


>gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 393

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D D    + S   A  E  +   + +    +   I  G+V ++ +FGAF+   GA D
Sbjct: 178 IEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGA-D 236

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL HIS+LS +RV    +V+  G  V V +++ D +R +I LS++ +  N    I
Sbjct: 237 GLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLRRLQPNPWDTI 291



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I     + ++  G V  V  FGAFV    A +GL+H S+L  +  A+  D+++ G 
Sbjct: 287 PWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLIHASELDADPQAQPRDLLQPGQ 346

Query: 669 TVWVKLLDFDD-RGKIKLSMK 688
            +  +++  D  R ++ LS++
Sbjct: 347 IITARIISLDKQRQRMGLSLR 367



 Score = 40.7 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            P+  ++ +G V+K+ + G  V     R+G++ I+ +      +    +K GD + V + 
Sbjct: 28  RPQRGEVREGVVMKIEESGILVSIGTKREGIIPIADVRAT-GDEVLSNLKVGDRIQVYVQ 86

Query: 676 DFDDRGK-----IKLSMKVV 690
             D   +     + L+M  V
Sbjct: 87  --DPENRQGDLVLSLTMVQV 104


>gi|237807289|ref|YP_002891729.1| RNA binding S1 domain-containing protein [Tolumonas auensis DSM
           9187]
 gi|237499550|gb|ACQ92143.1| RNA binding S1 domain protein [Tolumonas auensis DSM 9187]
          Length = 767

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + I +G V  V +FGAFV     +DGLVHIS ++   ++   +VVK GD V VK+L+ 
Sbjct: 645 KPDMILEGVVTNVTNFGAFVDIGVHQDGLVHISAITNRYISDPREVVKAGDIVKVKVLEV 704

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D  R +I L+M++ D+ +
Sbjct: 705 DIPRKRIALTMRLDDEAS 722


>gi|213649373|ref|ZP_03379426.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 417

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 75/138 (54%), Gaps = 8/138 (5%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           +R+ + + GK +   V +   K N      V ++  ++ E E + E  + + ++ E  ++
Sbjct: 1   MRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLENLQEGMEV 55

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R 
Sbjct: 56  -KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERT 113

Query: 682 KIKLSMKVVDQNTGKPIV 699
           ++ L +K + ++    I 
Sbjct: 114 RVSLGLKQLGEDPWVAIA 131



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 297 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 356

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            GD V  K    D + + I LS++  D+   K  +
Sbjct: 357 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAI 391



 Score = 64.5 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 57  GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEINVKVLKFDRE 111

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 112 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 171

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +        
Sbjct: 172 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRV 227

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 228 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 286

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 287 ERISLGVKQLAEDP 300



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+  VK+          +        +   +I           
Sbjct: 82  DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 141

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R +
Sbjct: 142 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 201

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 202 ISLGLKQCKSNPWQ 215


>gi|114145427|ref|NP_001041309.1| ATP-dependent RNA helicase DHX8 [Rattus norvegicus]
 gi|37654286|gb|AAQ96248.1| LRRGT00035 [Rattus norvegicus]
          Length = 1210

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 221 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 280

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 281 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 315


>gi|226330706|ref|ZP_03806224.1| hypothetical protein PROPEN_04626 [Proteus penneri ATCC 35198]
 gi|225201501|gb|EEG83855.1| hypothetical protein PROPEN_04626 [Proteus penneri ATCC 35198]
          Length = 557

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 111/257 (43%), Gaps = 25/257 (9%)

Query: 461 GIAMGLVKDGDDFIILSDI-SGDEDHLGHMDFKVAGTDSGI-----TAMQMDMKIGGISE 514
            I  G+V   D  ++L D     E  +    FK A  +  I       + +D    G  E
Sbjct: 22  AIVRGVVVAIDKDVVLVDAGLKSESAIPVEQFKNAQGELEIQVGDEIDVALDAVEDGFGE 81

Query: 515 NIMVM----------ALQQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQI 563
            ++             L++A      ++  ++ KV     ++L      +    +    +
Sbjct: 82  TVLSREKAKRHEAWLMLEKAYEENETVVGIINGKVKGGFTVELNGIRAFLPGSLVDVRPV 141

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R+   +  K +   V +   K N      V ++  ++ E E + E  + + ++ E  ++ 
Sbjct: 142 RDTTHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLENLQEGMEV- 195

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R +
Sbjct: 196 KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254

Query: 683 IKLSMKVVDQNTGKPIV 699
           + L +K + ++    I 
Sbjct: 255 VSLGLKQLGEDPWVAIA 271



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +        I+  ++    +
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG-----DEITVKVLKFDRE 251

Query: 523 QAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + +       +  +    +++   +  + T RV  +      +    G+ G V    ++ 
Sbjct: 252 RTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311

Query: 581 TGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           T   +                 +ID++           +        +   +    N   
Sbjct: 312 TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSN----PWQQFAETHNKNDRV 367

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DR 680
           +G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L  D +R
Sbjct: 368 EGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 427 ERISLGVKQLSEDP 440



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  V   GA V      +G +  S+ S +RV   + V+  G+ V  K    D + 
Sbjct: 453 IVSGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLNVGEAVEAKYTGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS++  D+   K  +
Sbjct: 513 RVINLSVRAKDEADEKDAI 531



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    V+     VN+ D+ TVK+          +        +   +I           
Sbjct: 222 DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D+ R +
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 342 ISLGLKQCKSNPWQ 355


>gi|148976495|ref|ZP_01813191.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3]
 gi|145964071|gb|EDK29328.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3]
          Length = 776

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVSDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIALSMRMKDEP 725


>gi|170940268|emb|CAP65495.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1151

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 5/95 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVV 664
              R + D P++NK+Y G V  V DFGAFV+  G +   DGLVHIS    +RV    DVV
Sbjct: 196 PPPRDLDDTPQLNKVYDGHVTGVKDFGAFVNIHGVKGKVDGLVHISAFG-QRVNHPEDVV 254

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
             G  V VK++   +  ++ LSMK +DQ TG  + 
Sbjct: 255 TRGQNVKVKVVKI-EGNRVGLSMKDIDQETGVDMA 288


>gi|311267143|ref|XP_003131427.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Sus scrofa]
          Length = 1158

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 244 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 303

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 304 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 338


>gi|153833924|ref|ZP_01986591.1| protein YhgF [Vibrio harveyi HY01]
 gi|148869762|gb|EDL68739.1| protein YhgF [Vibrio harveyi HY01]
          Length = 773

 Score = 93.8 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMRMNDEP 725


>gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 337

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 90/234 (38%), Gaps = 14/234 (5%)

Query: 466 LVKDGDDFIILSDISGDEDHLGHMDFKVAGTD----SGITAMQMDMKIGGISENIMVMAL 521
            V + ++     D +  E+     +            G   + M      ++ + +   L
Sbjct: 87  GVIEKENLSNDPDFNMKEEIHVGDEITATVLKTDDGEGNIVLSMKEANDKMAWDRLRTML 146

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
           ++     + I   ++         +  F P   + A   + + + +G    V        
Sbjct: 147 EERTVVPVKITEIVNSGAIAQIEGMRGFIPASRLDAAYVENLEDFLGRTIDV-------- 198

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
              +  D++    + S   A  E  +E  +      EV  I  G V  +  +GAF+    
Sbjct: 199 -TVITADEEHNKLVLSGREAAREKLQEEKKRRIAKCEVGVIMDGTVDSIKPYGAFISLEN 257

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              GLVHISQ+S++R+   S V+KEG  V VK++   D  KI LSMK V+ N  
Sbjct: 258 GLSGLVHISQISSKRIPHPSAVLKEGQKVTVKIISTAD-NKISLSMKAVEANEA 310



 Score = 41.4 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++     + +         I  G V+ V +    +      +G++    LS +     
Sbjct: 43  ESMDDYAAELEASFKKVREGDILTGTVIGVFESHVLLDLKYYAEGVIEKENLSNDPDFNM 102

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
            + +  GD +   +L  DD  G I LSMK  +
Sbjct: 103 KEEIHVGDEITATVLKTDDGEGNIVLSMKEAN 134


>gi|303312631|ref|XP_003066327.1| ATP-dependent helicase DHX8 , putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105989|gb|EER24182.1| ATP-dependent helicase DHX8 , putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1225

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---D 644
           DD    +       +    R     + + P + K+Y G+V  + DFGAFV+  G R   D
Sbjct: 226 DDYKDRRGRRGRDDDDYFRRPPTPELDERPILYKVYDGRVTGIKDFGAFVNLQGVRGKVD 285

Query: 645 GLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           GLVH+S +    RV   SD+V     V VK++      +I LSMK VDQ TG+ +V
Sbjct: 286 GLVHVSAMQDGARVNHPSDLVSRAQPVKVKVVSIQGS-RIGLSMKEVDQVTGRDLV 340


>gi|225377348|ref|ZP_03754569.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
           16841]
 gi|225210879|gb|EEG93233.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
           16841]
          Length = 300

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 14/227 (6%)

Query: 471 DDFIILSDISGDED--HLGHMDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKR 526
           +DF    D +  E       ++  V  TD G     +        ++   +   ++    
Sbjct: 51  EDFSNDPDFAVLEQIHAGDEIEATVVKTDDGQGNILLSRKEANDVLAWEKLQQMMEDGTV 110

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
            ++ I   +   +      +  F P  ++     +     IG          E     + 
Sbjct: 111 VKVRIKESVPSGVVTFLEGIRAFIPASQLALDYVENTEEWIGK---------EVEAKVIT 161

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +D +    + S+     EAA E       +     + +G V  +M +GAF++      GL
Sbjct: 162 VDPEKEKLVLSAKQVAKEAAIEERNHKISMIVPGTVMEGTVESLMPYGAFINLGNGLSGL 221

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VHISQ+   R+ K S+V+KEG  V  K+L+ +D  KI LSMK +++ 
Sbjct: 222 VHISQICERRIKKPSEVLKEGQKVKAKVLNTND-NKISLSMKALEEE 267


>gi|239827521|ref|YP_002950145.1| 30S ribosomal protein S1 [Geobacillus sp. WCH70]
 gi|239807814|gb|ACS24879.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 387

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P  + +     GK +   V +        +   + ++  ++ E E  R+   +++ + 
Sbjct: 137 VEPHYVEDFSDYKGKTLAVKVVELNR-----EKNRIILSHRAVVEEEQERKHKEALSRL- 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V +V DFG FV   G  DGLVHISQLS  RVA  S+VVKEG+TV VK+L  
Sbjct: 191 EPGQVLEGTVRRVTDFGVFVDVGGF-DGLVHISQLSHTRVAHPSEVVKEGETVKVKVLAV 249

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D + G++ LS+K       + I 
Sbjct: 250 DEENGRVSLSIKEAMPGPWEGIA 272



 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    KV   D+   +++ S    +         I +      I  G+V +++ FGAFV 
Sbjct: 240 ETVKVKVLAVDEENGRVSLSIKEAMP---GPWEGIAEKVAPGDIVTGKVKRLVPFGAFVE 296

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVHISQ+S +R+    +V+KEG+ V  K+LD ++   +I LSM+ + +    P
Sbjct: 297 IFPGVEGLVHISQISNKRIGTPHEVLKEGEEVKAKVLDVNEAERRISLSMRELIEEETAP 356



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           E +    +V +V  I +G+VVK+ D    V   G++  G++ IS+LS+  + KTSD V  
Sbjct: 3   EDMNLEVNVYKVGDIVRGKVVKLEDKQVLVDIEGSKQSGIIPISELSSLHIEKTSDAVSV 62

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVDQN 693
           GD V  K+        ++ G + LS K VD +
Sbjct: 63  GDEVTAKVKKVEEGENEEDGLLILSKKAVDAD 94


>gi|126174291|ref|YP_001050440.1| 30S ribosomal protein S1 [Shewanella baltica OS155]
 gi|153000799|ref|YP_001366480.1| 30S ribosomal protein S1 [Shewanella baltica OS185]
 gi|160875508|ref|YP_001554824.1| 30S ribosomal protein S1 [Shewanella baltica OS195]
 gi|217973242|ref|YP_002357993.1| 30S ribosomal protein S1 [Shewanella baltica OS223]
 gi|304408840|ref|ZP_07390461.1| ribosomal protein S1 [Shewanella baltica OS183]
 gi|307302843|ref|ZP_07582598.1| ribosomal protein S1 [Shewanella baltica BA175]
 gi|125997496|gb|ABN61571.1| SSU ribosomal protein S1P [Shewanella baltica OS155]
 gi|151365417|gb|ABS08417.1| ribosomal protein S1 [Shewanella baltica OS185]
 gi|160861030|gb|ABX49564.1| ribosomal protein S1 [Shewanella baltica OS195]
 gi|217498377|gb|ACK46570.1| ribosomal protein S1 [Shewanella baltica OS223]
 gi|304352661|gb|EFM17058.1| ribosomal protein S1 [Shewanella baltica OS183]
 gi|306913203|gb|EFN43625.1| ribosomal protein S1 [Shewanella baltica BA175]
 gi|315267695|gb|ADT94548.1| ribosomal protein S1 [Shewanella baltica OS678]
          Length = 555

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLEYKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDALLENLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V  V   G  V      +G + ++ +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGTIVNGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  K +  D + + I LS+K  D+   K ++
Sbjct: 499 DAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVM 531



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +               
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFATRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440


>gi|114666957|ref|XP_001154148.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 4 [Pan
           troglodytes]
          Length = 1142

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|301768709|ref|XP_002919800.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Ailuropoda
           melanoleuca]
          Length = 1253

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 285 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 344

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 345 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 379


>gi|238751149|ref|ZP_04612644.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
 gi|238710627|gb|EEQ02850.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
          Length = 793

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+++ D  
Sbjct: 651 MILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQN 693
           R +I L+M++ +Q 
Sbjct: 711 RKRIALTMRLDEQP 724


>gi|169831339|ref|YP_001717321.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638183|gb|ACA59689.1| hydroxymethylbutenyl pyrophosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 677

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 3/109 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++   L E E +R+   ++    E   + KG V ++  FGAFV   G  DGL+HIS+
Sbjct: 467 KVILSRKVLLEEEYSRKRKETLETTQEG-DVVKGVVRRLTQFGAFVDI-GGLDGLLHISE 524

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +S  R+   S+V+K GD + V++L  D +  K+ LS+K V  N  + +V
Sbjct: 525 ISWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVV 573



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IR 575
           +  A ++    R  +L E      +  L+  +    V+ +     Q    + +GG   + 
Sbjct: 461 LNKARKKVILSRKVLLEEEYSRKRKETLETTQEGDVVKGVVRRLTQFGAFVDIGGLDGLL 520

Query: 576 GIVEQTGAKVN-------IDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNK 621
            I E +  ++N       + D+  V++        + +             + +   V  
Sbjct: 521 HISEISWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVVENYPVGS 580

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +   +VV+++ FGAFV      +GLVHIS L+   VAK  DV+ EG  + VK+L  DD  
Sbjct: 581 VVSARVVRLVPFGAFVELEPGVEGLVHISHLADWHVAKPEDVIAEGQQINVKVLSVDDEN 640

Query: 681 GKIKLSMKVV 690
            +I+LS++ V
Sbjct: 641 KRIRLSLREV 650



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679
            I +G +V+V      V      +G+V + +LS   V+   +VV+ GD + V ++   D+
Sbjct: 322 DIVRGVIVQVGQDEVLVDVGAKSEGVVPLRELSCYDVSSPDEVVQVGDEIDVWVVKAEDN 381

Query: 680 RGKIKLS 686
            G+I LS
Sbjct: 382 EGRIILS 388



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 580 QTGAKVNI------DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           Q G ++++      D++G + ++      ++A      ++       +  +G V +V+  
Sbjct: 366 QVGDEIDVWVVKAEDNEGRIILSKGRADAVKA----WDTLDKAFHGGETVRGVVREVVKG 421

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G  V         +  SQ+    V   S  V  G  +  ++++ +  R K+ LS KV+ +
Sbjct: 422 GLLVDL--GVRSFLPASQVERGYVEDLSQYV--GREISARIIELNKARKKVILSRKVLLE 477

Query: 693 NT 694
             
Sbjct: 478 EE 479


>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
 gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
           SAW760]
          Length = 238

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +  +  R+DGR +  +R    ++  L  + GS+    G+T  +  V  G  E  +   
Sbjct: 2   EYISPEGYRLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNT-IVEAVVFGPLEGRRR-- 58

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
                +  + M+ Y+    AT +  R     R  I    L ++    V+         + 
Sbjct: 59  ---NREGAELMVSYSQATFATRKR-REQMHDRTMIETAELLKQMYEQVIITKLLPETMID 114

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +  +I + DGS + A +   +LAL+DAG+P+   V+    G +    D  ++ D++ DE+
Sbjct: 115 LRVQIMQDDGSVTAAVINACTLALIDAGIPMIDIVSAAEGGYI----DGKMVVDMNKDEE 170

Query: 485 HLGHM 489
           ++G +
Sbjct: 171 NVGTV 175



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           SDG+     G T+V A V      +        L V+Y + T+A  K      RRE    
Sbjct: 32  SDGSARVRMGNTIVEAVVFGPLEGRRRNREGAELMVSYSQATFATRK------RREQMHD 85

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
              I  + ++ +    +       ET + + V     + S     + A + AL+ +G+P 
Sbjct: 86  RTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQDDGSVTAAVINACTLALIDAGIPM 145

Query: 146 EGPVVGAQVDYINGQYVLNPRLDEDQ 171
              V  A+  YI+G+ V++   DE+ 
Sbjct: 146 IDIVSAAEGGYIDGKMVVDMNKDEEN 171


>gi|308174080|ref|YP_003920785.1| RNA degradation presenting factor [Bacillus amyloliquefaciens DSM
           7]
 gi|307606944|emb|CBI43315.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328912409|gb|AEB64005.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
          Length = 382

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +  IV      V +D D    I S      +             
Sbjct: 132 VEAHFVEDFTDYKGKTLSLIV------VELDRDKNRVILSHRAVVEKEQTAKKHDFLQTL 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSV 244

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K         I
Sbjct: 245 DRDNERISLSIKETLPGPWSQI 266



 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSQIGEKVKQGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           TV VK+LD ++   +I LSM+ +++  
Sbjct: 322 TVKVKVLDVNESEERISLSMRELEEAP 348



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVV  
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVNV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|325143290|gb|EGC65626.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
 gi|325143323|gb|EGC65657.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
 gi|325143350|gb|EGC65683.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
          Length = 757

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 565 NVIGMGGKVIRGIVEQTGAK-------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
            +IG   +V +  V     +       ++I  +              A+           
Sbjct: 578 ELIGNRERVKQIKVSDFTDERFGLPTILDILSELEKPGRDPRGEFQTASFAEGIHEISDL 637

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+L+ 
Sbjct: 638 QVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVLEV 697

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D  R +I L+M++ D+  G
Sbjct: 698 DAARKRIALTMRLDDEPGG 716


>gi|317470634|ref|ZP_07930019.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901769|gb|EFV23698.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 309

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLA-EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           + ++  AK+   D+   K+  S+   E   A+E +     +     + +G V  +M +GA
Sbjct: 162 LKKEVEAKIITVDESRNKLVLSAKEVEKAKAQEELNHKMAMMRPGMVLEGTVENIMPYGA 221

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           FV       GL+HISQ S +R+    ++V+EG  V VK+L   D  KI LSMK ++++
Sbjct: 222 FVDLGDGLSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLKIAD-NKISLSMKALEES 278



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G +K+A      +E     + +     +   I +G V+ V D  A +       G++  
Sbjct: 2   KGDLKMAEEMKETMEQYENELEASFRKMDEGDIVEGDVLSVSDEEAVIDLKYYAQGILKA 61

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           S+ S +     ++ + EGD V  K++  DD  G I LS +  +Q
Sbjct: 62  SEYSDDPNVTLTEALNEGDRVKAKVISVDDGEGNIMLSKREANQ 105


>gi|269959402|ref|ZP_06173785.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835839|gb|EEZ89915.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 773

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMRMNDEP 725


>gi|254163335|ref|YP_003046443.1| putative transcriptional accessory protein [Escherichia coli B str.
           REL606]
 gi|253975236|gb|ACT40907.1| predicted transcriptional accessory protein [Escherichia coli B
           str. REL606]
 gi|253979392|gb|ACT45062.1| predicted transcriptional accessory protein [Escherichia coli
           BL21(DE3)]
          Length = 772

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 616 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D   G+
Sbjct: 676 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDVQPGE 726


>gi|329663394|ref|NP_001193020.1| ATP-dependent RNA helicase DHX8 [Bos taurus]
 gi|297487152|ref|XP_002696080.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus]
 gi|296476265|gb|DAA18380.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus]
          Length = 1218

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 250 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 309

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 310 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 344


>gi|281354218|gb|EFB29802.1| hypothetical protein PANDA_008429 [Ailuropoda melanoleuca]
          Length = 1219

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 251 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 310

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 311 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 345


>gi|167746216|ref|ZP_02418343.1| hypothetical protein ANACAC_00921 [Anaerostipes caccae DSM 14662]
 gi|167654209|gb|EDR98338.1| hypothetical protein ANACAC_00921 [Anaerostipes caccae DSM 14662]
          Length = 309

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLA-EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           + ++  AK+   D+   K+  S+   E   A+E +     +     + +G V  +M +GA
Sbjct: 162 LKKEVEAKIITVDESRNKLVLSAKEVEKAKAQEELNHKMAMMRPGMVLEGTVENIMPYGA 221

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           FV       GL+HISQ S +R+    ++V+EG  V VK+L   D  KI LSMK ++++
Sbjct: 222 FVDLGDGLSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLKIAD-NKISLSMKALEES 278



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G +K+A      +E     + +     +   I +G V+ V D  A +       G++  
Sbjct: 2   KGDLKMAEEMKETMEQYENELEASFRKMDEGDIVEGDVLSVSDEEAVIDLKYYAQGILKA 61

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           S+ S +     ++ + EGD V  K++  DD  G I LS +  +Q
Sbjct: 62  SEYSDDPNVTLTEALNEGDRVKAKVISVDDGEGNIVLSKREANQ 105


>gi|73965615|ref|XP_537627.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           isoform 1 [Canis familiaris]
          Length = 1216

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 248 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 307

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 308 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 342


>gi|297571464|ref|YP_003697238.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931811|gb|ADH92619.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
           20595]
          Length = 489

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      ++++  G+V K++ FGAFV      +GLVHIS+L+   V     VVK G
Sbjct: 281 DPWQTFARTHAISQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVG 340

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V+VK++D D DR +I LS+K  ++
Sbjct: 341 DDVFVKVIDIDLDRRRISLSLKQANE 366



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  + +E  +  +RS   +  +  ++  G +  +++FG
Sbjct: 163 YIGKEIEAKIIELDKNRNNVVLSRRSWLEQTQSEVRSTFLNTLQKGQVRDGVISSIVNFG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 223 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLEVDMDRERVSLSLKATQED 281

Query: 694 TGK 696
             +
Sbjct: 282 PWQ 284


>gi|149722162|ref|XP_001500390.1| PREDICTED: similar to Exosome component 5 [Equus caballus]
          Length = 235

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
             + +AL+DAGVP+     G+   L  DG    ++ D +  ++         A
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDSDG---TLMLDPTAKQEKEARAVLTFA 184



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 22/150 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E    R+I  +   +       +    V++ V+      S     + AA  AL+ +G
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVIS--DAGSLLACCLNAACMALVDAG 145

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
           +P      G       +G  +L+P   +++
Sbjct: 146 VPMRALFCGVTCALDSDGTLMLDPTAKQEK 175


>gi|56699440|ref|NP_659080.2| ATP-dependent RNA helicase DHX8 [Mus musculus]
 gi|187471036|sp|A2A4P0|DHX8_MOUSE RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH
           box protein 8
 gi|123236581|emb|CAM22647.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|123239591|emb|CAM24250.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|124376748|gb|AAI32446.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|148702118|gb|EDL34065.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
          Length = 1244

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 276 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 335

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 336 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 370


>gi|194435878|ref|ZP_03067981.1| putative transcriptional accessory protein [Escherichia coli 101-1]
 gi|300931061|ref|ZP_07146416.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
 gi|194425421|gb|EDX41405.1| putative transcriptional accessory protein [Escherichia coli 101-1]
 gi|242378930|emb|CAQ33728.1| predicted transcriptional accessory protein [Escherichia coli
           BL21(DE3)]
 gi|300461105|gb|EFK24598.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
 gi|323959593|gb|EGB55245.1| tex protein containing protein [Escherichia coli H489]
          Length = 773

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D   G+
Sbjct: 677 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDVQPGE 727


>gi|150015329|ref|YP_001307583.1| RNA-binding S1 domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901794|gb|ABR32627.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 725

 Score = 93.8 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI-RSITDVPEV 619
            ++   + +G   ++ I+++             K       E+               + 
Sbjct: 599 KKLSETLEVGEMTLKDIIKELK-----------KPGRDPREEMPKPILKTGIIELKDLKP 647

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             +  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D+
Sbjct: 648 GMVLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHPLDIVKVGDIVKVAILEVDE 707

Query: 680 -RGKIKLSMKVVDQNT 694
            R +I L+MK +D++ 
Sbjct: 708 KRKRISLTMKDIDESA 723


>gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
 gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
          Length = 496

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I   G+V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 247 IDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQTFARTHAIGQVVPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD V+VK++D D +R +I 
Sbjct: 302 KVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRIS 361

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 362 LSLKQANE 369



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++  G V  +++FGAFV
Sbjct: 169 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFV 228

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +    +VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 229 DL-GGVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQ 287



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            ++  +V I+D GT         +  AA +      +      I +G +VKV      + 
Sbjct: 7   AKSAPQVAINDIGT-------AEDFLAAIDATIKYFND---GDIVEGTIVKVDRDEVLLD 56

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
                +G++   +LS +      +VVK GD V   +L   D  G++ LS K   
Sbjct: 57  IGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKEDKEGRLILSKKRAQ 110


>gi|71908357|ref|YP_285944.1| RNA binding S1 [Dechloromonas aromatica RCB]
 gi|71847978|gb|AAZ47474.1| RNA binding S1 [Dechloromonas aromatica RCB]
          Length = 772

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 9/157 (5%)

Query: 547 GEFTPRVEIMAIPPDQ-IRNVIG-----MGGKVIRGIVEQTGAKV--NIDDDGTVKIASS 598
            E  P VE + +  ++ I+ ++G      G    +   E+ G     +I  +        
Sbjct: 574 PEAYPVVEKIIVDLNKPIKEILGDSRALKGLNPSKYTDERFGLPTVQDIFKELEKPGRDP 633

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                 A                I +G V  V  FGAFV     +DGLVH+S LS   V 
Sbjct: 634 RPEFKTATFTDGVEKVSDLRPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSNTFVK 693

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              DVVK G  V VK+L+ D  R +I L+M++ D+ T
Sbjct: 694 DPHDVVKAGQVVKVKVLEVDLQRQRIALTMRMGDEPT 730


>gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S]
 gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S]
          Length = 490

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 167 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFV 226

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++  +
Sbjct: 227 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWR 285



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDALVKVIDIDLERRRISLSLKQANED 368



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|295097017|emb|CBK86107.1| Transcriptional accessory protein [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 776

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 652 MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 712 RKRIALTMR-LDEQPG 726


>gi|194216852|ref|XP_001491740.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           isoform 2 [Equus caballus]
          Length = 1226

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 258 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 317

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 318 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 352


>gi|195485854|ref|XP_002091261.1| GE13554 [Drosophila yakuba]
 gi|194177362|gb|EDW90973.1| GE13554 [Drosophila yakuba]
          Length = 1242

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEG 667
           ++TD PE  KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV   
Sbjct: 277 AMTDDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 336

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            TV VK++    + K+ LSMK VDQ++G+ +
Sbjct: 337 QTVKVKVMSITGQ-KVSLSMKEVDQDSGRDL 366


>gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
 gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
          Length = 497

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|153837872|ref|ZP_01990539.1| protein YhgF [Vibrio parahaemolyticus AQ3810]
 gi|149748735|gb|EDM59580.1| protein YhgF [Vibrio parahaemolyticus AQ3810]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVADLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMR-LNDEPGQD 728


>gi|118443081|ref|YP_878976.1| S1 RNA-binding domain-containing protein [Clostridium novyi NT]
 gi|118133537|gb|ABK60581.1| S1 RNA binding domain protein [Clostridium novyi NT]
          Length = 718

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   +  G V  V DFGAFV     +DGLVHISQLS + V    D+VK GD V V++L+ 
Sbjct: 646 KPGMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEV 705

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I LSMK
Sbjct: 706 DEKRGRISLSMK 717


>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
           infestans T30-4]
 gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
           infestans T30-4]
          Length = 252

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 12/221 (5%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R    Q+G +    GS+    G T+ +  V  G R D +     S   +   +    
Sbjct: 35  DEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAV-YGPRTDTRARREFSKDGQ--LVCDVK 91

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A     R       E+    +   A+ P +         + +   I E DG    A
Sbjct: 92  YAPFADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAA 151

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS- 498
            +  +SLAL DA V +   V   + G+V    +  ++ D S +E+  G     +A   S 
Sbjct: 152 ALNCASLALADAAVEMYDVVTASSAGIV----NGSVVLDPSREEEQRGDGKLALAYMPSM 207

Query: 499 -GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +T M   ++ G I    +  A+         ++  +   
Sbjct: 208 GRVTYM---LQAGKIHHTQLQEAVDLCTDACTGVIRSLLTA 245



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 17/199 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRES 82
           + G+     G T VL  V   R+    +  F     L  + +   +A         RRE 
Sbjct: 50  AAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLT-----RRER 104

Query: 83  RPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
               +E+ +S +++ ++ P  +  K  K    V + +++ D        ++  AS AL  
Sbjct: 105 GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLA--AALNCASLALAD 162

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSE 197
           + +     V  +    +NG  VL+P  +E+Q   G L L    +   V    L+A ++  
Sbjct: 163 AAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRV-TYMLQAGKIHH 221

Query: 198 DVVLDAIIFGHNECKPVIE 216
             + +A+    + C  VI 
Sbjct: 222 TQLQEAVDLCTDACTGVIR 240


>gi|95929492|ref|ZP_01312235.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95134608|gb|EAT16264.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 582

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +     + + I E    K+   +     I  S    +E  RE  RS T    E  +I +G
Sbjct: 160 LRPVRNLDKLIGETFEFKIIKLNKRRGNIVLSRRVLLETERESQRSDTLKTLEEGQIVEG 219

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAF+   G  DGL+HI+ +S  RV+  SD++  GD++ VK+L FD ++ ++ 
Sbjct: 220 VVKNLTDYGAFIDL-GGIDGLLHITDMSWGRVSHPSDILAVGDSINVKVLKFDREKERVS 278

Query: 685 LSMKVVDQNTG 695
           L +K +  +  
Sbjct: 279 LGLKQITPDPW 289



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   S+ +         G+VV + D+GAF+      +GL+H+S++S  +R+   + ++  
Sbjct: 287 DPWLSVAEKYPTEARVTGKVVSLTDYGAFIELEEGVEGLIHVSEMSWTKRIKHPNKLLSI 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  +I L +K V+ N  + I
Sbjct: 347 GDEVETVVLAMDTENRRISLGLKQVEPNPWEVI 379



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I +      I +GQV  + DFG FV      DGLVHIS LS  +R+   S++ K+G
Sbjct: 375 PWEVIGEKFPAGTIIEGQVKNITDFGIFVGVDEGIDGLVHISDLSWTKRIKHPSELYKKG 434

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D V   +L+ D D  +  L +K + Q+  + I
Sbjct: 435 DLVKAVVLNIDRDNERFSLGVKQLTQDPWQII 466



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++  + I +      I +G+V  V +FG F+      +GL+H+S++S ++V    D  K 
Sbjct: 460 QDPWQIIPEQYAPGTIIRGKVTSVTEFGIFLEVEEGVEGLIHVSEISKDKVDSPKDFAKV 519

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD +   +L  D +  KI LS+K +     K
Sbjct: 520 GDELEAVVLHVDTNEHKIALSIKHLSDRKEK 550


>gi|170718656|ref|YP_001783852.1| RNA-binding S1 domain-containing protein [Haemophilus somnus 2336]
 gi|168826785|gb|ACA32156.1| RNA binding S1 domain protein [Haemophilus somnus 2336]
          Length = 767

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS LS + V  + +VVK GD V VK+L+ 
Sbjct: 649 KAGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVENSHEVVKTGDIVKVKVLEV 708

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M+ +D+N  K
Sbjct: 709 DVARKRIGLTMR-LDENPSK 727


>gi|69245447|ref|ZP_00603442.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257879858|ref|ZP_05659511.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257882584|ref|ZP_05662237.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257886018|ref|ZP_05665671.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257891699|ref|ZP_05671352.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257894174|ref|ZP_05673827.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|258614286|ref|ZP_05712056.1| hypothetical protein EfaeD_01107 [Enterococcus faecium DO]
 gi|260559531|ref|ZP_05831712.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|261206682|ref|ZP_05921380.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289565043|ref|ZP_06445497.1| hypothetical protein EDAG_00095 [Enterococcus faecium D344SRF]
 gi|293553696|ref|ZP_06674320.1| S1-type RNA-binding domain-containing protein [Enterococcus faecium
           E1039]
 gi|293563197|ref|ZP_06677653.1| S1-type RNA-binding domain [Enterococcus faecium E1162]
 gi|293570119|ref|ZP_06681199.1| S1-type RNA-binding protein [Enterococcus faecium E1071]
 gi|294614896|ref|ZP_06694787.1| S1-type RNA-binding protein [Enterococcus faecium E1636]
 gi|294618632|ref|ZP_06698171.1| RNA-binding S1 domain protein [Enterococcus faecium E1679]
 gi|294623708|ref|ZP_06702541.1| RNA-binding S1 domain protein [Enterococcus faecium U0317]
 gi|314938211|ref|ZP_07845511.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
 gi|314943106|ref|ZP_07849905.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|314949303|ref|ZP_07852646.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
 gi|314952236|ref|ZP_07855251.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|314992094|ref|ZP_07857544.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|314996277|ref|ZP_07861333.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|68195829|gb|EAN10265.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257814086|gb|EEV42844.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257818242|gb|EEV45570.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257821874|gb|EEV49004.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257828059|gb|EEV54685.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257830553|gb|EEV57160.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260074630|gb|EEW62951.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|260079175|gb|EEW66868.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289163250|gb|EFD11096.1| hypothetical protein EDAG_00095 [Enterococcus faecium D344SRF]
 gi|291587491|gb|EFF19375.1| S1-type RNA-binding protein [Enterococcus faecium E1071]
 gi|291592182|gb|EFF23800.1| S1-type RNA-binding protein [Enterococcus faecium E1636]
 gi|291595151|gb|EFF26489.1| RNA-binding S1 domain protein [Enterococcus faecium E1679]
 gi|291596923|gb|EFF28141.1| RNA-binding S1 domain protein [Enterococcus faecium U0317]
 gi|291602271|gb|EFF32499.1| S1-type RNA-binding domain-containing protein [Enterococcus faecium
           E1039]
 gi|291604847|gb|EFF34325.1| S1-type RNA-binding domain [Enterococcus faecium E1162]
 gi|313589521|gb|EFR68366.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|313593308|gb|EFR72153.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|313595631|gb|EFR74476.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|313598165|gb|EFR77010.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|313642407|gb|EFS06987.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
 gi|313644309|gb|EFS08889.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
          Length = 156

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK++  
Sbjct: 4   EVGAKLQGKVSGITNFGAFIDLGAGKTGLVHISEVSNGYVKDIHDVLSVGDEVTVKVISV 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           +D GKI LS++   +   +
Sbjct: 64  NDDGKIGLSIRKAQEQPAE 82


>gi|312882892|ref|ZP_07742624.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369411|gb|EFP96931.1| hypothetical protein VIBC2010_19975 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 767

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   + +G V  V +FGAFV     +DGLVHIS L+ + V+   +VVK GD V 
Sbjct: 641 NKVSDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKFVSDPREVVKAGDIVK 700

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 701 VKVMEVDVKRKRIGLSMRLNDEP 723


>gi|260902551|ref|ZP_05910946.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308109731|gb|EFO47271.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVADLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMR-LNDEPGQD 728


>gi|221044526|dbj|BAH13940.1| unnamed protein product [Homo sapiens]
          Length = 1181

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
 gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
          Length = 261

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 88/232 (37%), Gaps = 17/232 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR     R    Q G      GS+    G T+ IV V  G RE ++   ++  +  
Sbjct: 38  PRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSV-FGPRESKK---AMMYSDI 93

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                + ++   AT    + GA ++    +  +  +A+   +        T+ + + + E
Sbjct: 94  GRLNCNVSYTTFATPVRGQ-GADNK---EYSSMLYKALEGAVMLHTFPKTTVDVFALVLE 149

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S GS     +  +SLAL DAG+ +   V  +++          I+ D + DE+       
Sbjct: 150 SGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKN----IIIDPTSDEEAWQDGSL 205

Query: 492 KVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            VA       IT +      G  S+  +  A++        + + +   L +
Sbjct: 206 VVAFMPARKEITQL---TLTGEWSDGRITNAVELCMDACSKLGDILRDHLKD 254



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 16/206 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G+T V+ +V   R  K      D   L  N    T+A      G   +E  
Sbjct: 61  ASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDIGRLNCNVSYTTFATPVRGQGADNKE-- 118

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P ++S   AS AL  +G+
Sbjct: 119 ---YSSMLYKALEGAV--MLHTFPKTTVDVFALVLESGGSDLPIIISC--ASLALADAGI 171

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V    V       +++P  DE+    GSL +     +  +  + L   + S+  +
Sbjct: 172 MMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLVVAFMPARKEITQLTLTG-EWSDGRI 230

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCA 226
            +A+    + C  + + +    K  A
Sbjct: 231 TNAVELCMDACSKLGDILRDHLKDTA 256


>gi|227112180|ref|ZP_03825836.1| putative RNA binding protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 777

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 711 RKRIALTMR-LDEQPG 725


>gi|225019196|ref|ZP_03708388.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum
           DSM 5476]
 gi|224948048|gb|EEG29257.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum
           DSM 5476]
          Length = 663

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 556 MAIPPDQIRNV-IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           + IP  Q+ +  +    + ++  VE    +VN      V    + L E + A+       
Sbjct: 416 IFIPISQLSDRRVENAEEFLKKEVEFKIIEVNPSRKRAVASVRALLNEAKKAKA--EEFW 473

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E+ K Y G V  + D+GAFV   G  DG++HI++LS  ++   SD+VK GD V V +
Sbjct: 474 ASVEIGKTYTGTVKSLTDYGAFVDL-GGVDGMIHITELSWTKIKHPSDIVKVGDVVEVYV 532

Query: 675 LDFD-DRGKIKLSMKVVDQNTGK 696
            D D ++ KI L  +  + N  +
Sbjct: 533 KDIDQEKKKISLGYRKSEDNPWE 555



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 15/136 (11%)

Query: 570 GGKVIRGIVEQTGAKV----NIDDDGTVKIASSSLAEIEAAR----------EMIRSITD 615
           G   +  I E +  K+    +I   G V        + E  +                  
Sbjct: 500 GVDGMIHITELSWTKIKHPSDIVKVGDVVEVYVKDIDQEKKKISLGYRKSEDNPWEIFKK 559

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
              V+++    +V +  FGAF       DGL+HISQ++ + +AK SDV+  G  V  K+ 
Sbjct: 560 DYAVDQVVNVTIVSLTQFGAFAEIIPGVDGLIHISQIANQHIAKVSDVLSVGQKVDAKIT 619

Query: 676 DFD-DRGKIKLSMKVV 690
           + D D+ +I LSM+ +
Sbjct: 620 EIDVDKKRISLSMRAL 635



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   +  +     K  KG +  +      V   G + G +  S+LS +   K  D+V +G
Sbjct: 293 EQSEAQAERLYSGKRIKGVITSIAKNEVQVDIGGKQSGFIPASELSDDPNMKPEDIVSKG 352

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           + + + +L  +D+ G + LS K +D   G
Sbjct: 353 EELDLVVLKVNDQDGIVTLSKKRLDAEKG 381



 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  E+   P  +  +++  G ++   +      KVN D DG V ++   L     A +
Sbjct: 331 FIPASELSDDPNMKPEDIVSKGEELDLVV-----LKVN-DQDGIVTLSKKRLD----AEK 380

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I    + NK   G +  V+  GA V         + ISQLS  RV    + +K+  
Sbjct: 381 GFEEIITAKDENKTMTGVITDVVRGGALV-LTNGVKIFIPISQLSDRRVENAEEFLKK-- 437

Query: 669 TVWVKLLDFDDRGK 682
            V  K+++ +   K
Sbjct: 438 EVEFKIIEVNPSRK 451


>gi|170726659|ref|YP_001760685.1| 30S ribosomal protein S1 [Shewanella woodyi ATCC 51908]
 gi|169812006|gb|ACA86590.1| ribosomal protein S1 [Shewanella woodyi ATCC 51908]
          Length = 555

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 92/213 (43%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +  ++  A + A+     I  ++    +     +
Sbjct: 68  VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGVINGKVKGGFTVELNGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   +  K +   V +   K N      V ++  ++ E E++
Sbjct: 128 RAFLPGSL---VDVRPVRDTAHLENKDLEFKVIKLDQKRN-----NVVVSRRAVIESESS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 180 AERDALLENLQEGQSV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     + 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPEST 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKVNPWDD 356



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V  V   G  +      +G + +S +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGAIVNGTVTAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K +  D + + I LS+K  D+   K 
Sbjct: 499 DAVESKFMGVDRKNRTISLSIKAKDEADEKE 529



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S I  +  ++ +  +  +       
Sbjct: 197 GIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +  L++ +  P    +      + +      I  G + +  +
Sbjct: 250 ---RERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNLTDYGCFVEIEEGVEGLVHV 306

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------------- 622
            E      NI     V +       +    E  R I+   +  K+               
Sbjct: 307 SEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFADRFAKGDK 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
             G++  + DFG F+   G  DGLVH+S +S      +     K+GD +   +L  D +R
Sbjct: 367 VTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVAEYKKGDEINAVVLSVDPER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K  + + 
Sbjct: 427 ERISLGVKQTEDDP 440


>gi|118443423|ref|YP_878169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium novyi NT]
 gi|118133879|gb|ABK60923.1| rpsA [Clostridium novyi NT]
          Length = 634

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 99/250 (39%), Gaps = 20/250 (8%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           D  +P+ +             D+ I + D+    D +      +   D  +   +++++ 
Sbjct: 325 DGIIPLKEA----------TRDENISMKDLFNIGDEVTTKVVSLKNNDDCVVLSKIEIER 374

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
               + I   A        + I   +   +      +  F P   +     + +   I  
Sbjct: 375 EEAFKEI-EEAFNNKTTLNISIKESVKGGIIGRYRGVRIFVPASHVELFHVEDLSVYIEQ 433

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
              V   I+E       ++  GT  +AS      +   +      +  + + + +G++ +
Sbjct: 434 EMTV--SIIEFR-----VNRKGTKIVASRRNVLQKEQAKQEEEAWETFKKDDVVEGEIKR 486

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + +FGAFV      DGL+H+S++S  RV K  D++  G+ V V +L+ D +  K+ LS+K
Sbjct: 487 LTNFGAFVDI-NGIDGLLHVSEISWGRVEKPEDILSVGEKVKVCILNIDKEHKKLSLSIK 545

Query: 689 VVDQNTGKPI 698
            + ++    +
Sbjct: 546 KLTEDPWNNV 555



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++ +   V  +  G++V+  DFGAFV      DGLVH+S++S +R+ K SDV++  
Sbjct: 550 DPWNNVEEKYPVGSVVLGKIVRFADFGAFVQLEPGIDGLVHVSEISYKRINKPSDVLELN 609

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
             V  K+++ + +  ++ LS+K  +
Sbjct: 610 QEVKAKIINVNKETKRLSLSIKETE 634



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +   K++ ++ +        +        V    KGQV+ + +  AFV+    +DG+
Sbjct: 268 IIKEAISKMSENNNSAFNEQLAYMEQNDIQIAVGDTVKGQVISLNEKEAFVNIGYKKDGI 327

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + + + + +      D+   GD V  K++   + 
Sbjct: 328 IPLKEATRDENISMKDLFNIGDEVTTKVVSLKNN 361


>gi|147676524|ref|YP_001210739.1| RNA binding protein [Pelotomaculum thermopropionicum SI]
 gi|146272621|dbj|BAF58370.1| predicted RNA binding protein [Pelotomaculum thermopropionicum SI]
          Length = 126

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V  + +FGAF+   G   GLVHIS+++   V    D +K  D V VK++  
Sbjct: 4   EVGSVLEGVVTGITNFGAFIELPGGETGLVHISEIAEVYVKDVHDFLKTNDKVTVKVISI 63

Query: 678 DDRGKIKLSMKVVDQN 693
           D +GKI LS+K V+ +
Sbjct: 64  DPKGKIGLSIKQVNPS 79


>gi|60360134|dbj|BAD90286.1| mKIAA4096 protein [Mus musculus]
          Length = 1264

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 296 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 355

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 356 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 390


>gi|4826690|ref|NP_004932.1| ATP-dependent RNA helicase DHX8 [Homo sapiens]
 gi|114666955|ref|XP_001154202.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 5 [Pan
           troglodytes]
 gi|3023637|sp|Q14562|DHX8_HUMAN RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH
           box protein 8; AltName: Full=RNA helicase HRH1
 gi|807817|dbj|BAA09078.1| RNA helicase [Homo sapiens]
 gi|119572062|gb|EAW51677.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_b [Homo
           sapiens]
 gi|168275648|dbj|BAG10544.1| ATP-dependent RNA helicase DHX8 [synthetic construct]
          Length = 1220

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|90415942|ref|ZP_01223875.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2207]
 gi|90332316|gb|EAS47513.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2207]
          Length = 800

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS ++   V    +VVK GD V VK+++ D  
Sbjct: 655 MLLEGVVTNVTNFGAFVDVGVHQDGLVHISAIANRFVKDPHEVVKTGDIVKVKVMEVDVA 714

Query: 680 RGKIKLSMKVVDQNT 694
           R +I LSM++ D+ T
Sbjct: 715 RKRIALSMRMDDEVT 729


>gi|28896924|ref|NP_796529.1| hypothetical protein VP0150 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365889|ref|ZP_05778383.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877824|ref|ZP_05890179.1| protein YhgF [Vibrio parahaemolyticus AN-5034]
 gi|260895527|ref|ZP_05904023.1| protein YhgF [Vibrio parahaemolyticus Peru-466]
 gi|28805132|dbj|BAC58413.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088488|gb|EFO38183.1| protein YhgF [Vibrio parahaemolyticus Peru-466]
 gi|308090101|gb|EFO39796.1| protein YhgF [Vibrio parahaemolyticus AN-5034]
 gi|308113482|gb|EFO51022.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVADLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMR-LNDEPGQD 728


>gi|332799296|ref|YP_004460795.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Tepidanaerobacter sp. Re1]
 gi|332697031|gb|AEE91488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Tepidanaerobacter sp. Re1]
          Length = 668

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               + +   +  I +G+VVK+++FGAFV      +GLVHISQ+S E +A   DV+KEGD
Sbjct: 553 PWDELDEKYTIGSIIEGKVVKLVNFGAFVEVAPGVEGLVHISQISQEHIANPEDVLKEGD 612

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVD 691
           +V VK+LD D +G ++ LS+K   
Sbjct: 613 SVKVKILDVDTKGKRMSLSIKEAQ 636



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +  KG V ++  FGAFV   G  DGL+HIS L+ +++   S++VKE   V V +L  
Sbjct: 477 EEGQTVKGVVKRLTGFGAFVDI-GGVDGLIHISDLAWQKIKHPSEIVKEEQEVEVLVLKV 535

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +R +I L +K +  N    +
Sbjct: 536 DKERERISLGLKQIMPNPWDEL 557



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I  G      I+++  +K++  +       +    E         +     + + I +G 
Sbjct: 254 ITAGASTPDWIIKEVISKMDEFNKEMNNQETVKKEEEGE--LNYENTFTDLKEDTIVEGT 311

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKL 685
           VVKV +    V+     DG++ I++LS        D++K GD + V ++   D+ G + L
Sbjct: 312 VVKVDNNEVLVNIGYKSDGIIPINELSDIAFESPEDIIKVGDKIQVYIMKLEDEDGNVVL 371

Query: 686 SMKVVD 691
           S K  D
Sbjct: 372 SKKKAD 377



 Score = 39.1 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +   ++I +G K+   I++        D+DG V ++      I         I D+    
Sbjct: 343 ESPEDIIKVGDKIQVYIMKLE------DEDGNVVLSKKKADIIN----TWNYIEDIYNHQ 392

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V +V+  G  V   G + G +  S L    V   +  V  G  + + +L+ D +
Sbjct: 393 GDLEGIVTEVVKGGVLVDINGIK-GFIPASHLDLRYVPDLN--VFVGKKLKLHILELDRN 449

Query: 680 RGKIKLSMKVV 690
           + +I LS K V
Sbjct: 450 KNRIVLSRKYV 460


>gi|296201539|ref|XP_002748077.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 2
           [Callithrix jacchus]
          Length = 1177

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 248 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 307

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 308 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 342


>gi|326202462|ref|ZP_08192331.1| RNA binding S1 domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325987580|gb|EGD48407.1| RNA binding S1 domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 143

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KI +G+V  +  FGAFV     + GLVHIS+++ E V   S  +KE   V VK+L  
Sbjct: 4   EVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQMVKVKILSI 63

Query: 678 DDRGKIKLSM-KVVDQNT 694
           D  GK+ LS+ K +++N 
Sbjct: 64  DTNGKVSLSIKKAMEENP 81


>gi|239978882|ref|ZP_04701406.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
          Length = 504

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|127797813|gb|AAH47327.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens]
          Length = 1220

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|120598785|ref|YP_963359.1| 30S ribosomal protein S1 [Shewanella sp. W3-18-1]
 gi|146293138|ref|YP_001183562.1| 30S ribosomal protein S1 [Shewanella putrefaciens CN-32]
 gi|120558878|gb|ABM24805.1| SSU ribosomal protein S1P [Shewanella sp. W3-18-1]
 gi|145564828|gb|ABP75763.1| SSU ribosomal protein S1P [Shewanella putrefaciens CN-32]
 gi|319426350|gb|ADV54424.1| ribosomal protein S1 [Shewanella putrefaciens 200]
          Length = 555

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLEYKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDALLENLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V  V   G  V      +G + ++ +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  K +  D + + I LS+K  D+   K ++
Sbjct: 499 DAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVM 531



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +               
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFATRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440


>gi|114666953|ref|XP_001154075.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 3 [Pan
           troglodytes]
          Length = 1181

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|323137931|ref|ZP_08073006.1| ribosomal protein S1 [Methylocystis sp. ATCC 49242]
 gi|322396934|gb|EFX99460.1| ribosomal protein S1 [Methylocystis sp. ATCC 49242]
          Length = 581

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 174 GNIVVSRRTVLEESRAEQRHEIVANLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 231

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   S+V+  G TV VK++  + +  +I L MK + ++  + I
Sbjct: 232 DIAWRRVNHPSEVLTIGQTVKVKIIKINHETHRISLGMKQLLEDPWQGI 280



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 275 DPWQGIEAKYPIGAKFHGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 335 SQEVDVQVLEVDPVKRRISLGLKQTLQNPWE 365



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +   +     G+V    +FG F+   G  DG+VH+S L   R   +  +  K
Sbjct: 361 QNPWEAFAEKHPIGSTVSGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYK 420

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD +  ++LD D ++ +I L +K +  + 
Sbjct: 421 KGDVINAQVLDVDVEKERISLGVKQLAGDP 450



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLV 647
           +   + +    LA    A               +   +VV+V D G  V   G      +
Sbjct: 435 EKERISLGVKQLAGDPFASVGGGEEGGDVRKGAVVTCEVVEVKDSGIDVKIAGTDLTTFI 494

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
             S+L+ +R  +  +    G+ V  ++  FD +  K+ +S+K ++    K  +
Sbjct: 495 KRSELARDRADQRPERFAVGEKVDARVTLFDRKARKVAVSIKALEVAEEKEAI 547


>gi|127801176|gb|AAH44586.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens]
          Length = 1220

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152]
 gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152]
          Length = 487

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 166 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFV 225

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++  +
Sbjct: 226 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWR 284



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 281 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 340

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 341 DDAMVKVIDIDLERRRISLSLKQANED 367



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 36  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 95

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 96  EGRLILSKKRAQ 107


>gi|260655105|ref|ZP_05860593.1| general stress protein 13 [Jonquetella anthropi E3_33 E1]
 gi|260630216|gb|EEX48410.1| general stress protein 13 [Jonquetella anthropi E3_33 E1]
          Length = 144

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            +  G V ++M +GAFV     +  ++HISQLS   + K  DV++    V  K+   D+R
Sbjct: 16  DVVTGTVEQIMPYGAFVRLSDGQRAMIHISQLSHRFIKKVEDVLQLNQEVKAKVTKIDER 75

Query: 681 GKIKLSMKVVDQNTGKP 697
           G+I LSMKV+++    P
Sbjct: 76  GRIDLSMKVLEEPMPAP 92


>gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
 gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
          Length = 502

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G +VKV      +      +G++   +LS +     ++VV  GD +   +L   D 
Sbjct: 40  DIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|170761041|ref|YP_001785504.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408030|gb|ACA56441.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 718

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DRKRNRISLSMK 717


>gi|113970262|ref|YP_734055.1| 30S ribosomal protein S1 [Shewanella sp. MR-4]
 gi|114047549|ref|YP_738099.1| 30S ribosomal protein S1 [Shewanella sp. MR-7]
 gi|117920422|ref|YP_869614.1| 30S ribosomal protein S1 [Shewanella sp. ANA-3]
 gi|113884946|gb|ABI38998.1| SSU ribosomal protein S1P [Shewanella sp. MR-4]
 gi|113888991|gb|ABI43042.1| SSU ribosomal protein S1P [Shewanella sp. MR-7]
 gi|117612754|gb|ABK48208.1| SSU ribosomal protein S1P [Shewanella sp. ANA-3]
          Length = 555

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLEYKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDALLENLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V  V   G  V      +G + ++ +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGTIVNGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  K +  D + + I LS+K  D+   K ++
Sbjct: 499 DAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVM 531



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +               
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFATRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440


>gi|24373949|ref|NP_717992.1| 30S ribosomal protein S1 [Shewanella oneidensis MR-1]
 gi|24348384|gb|AAN55436.1|AE015680_11 ribosomal protein S1 [Shewanella oneidensis MR-1]
          Length = 555

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A + A+     I  ++    +    
Sbjct: 66  DEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   +  K +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTAHLEYKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDALLENLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 236 NVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G V  V   G  V      +G + ++ +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D +  K +  D + + I LS+K  D+   K ++
Sbjct: 499 DAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVM 531



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +               
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFATRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440


>gi|269965880|ref|ZP_06179973.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829433|gb|EEZ83674.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 787

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 657 NSVSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDIVK 716

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 717 VKVMEVDVQRKRIGLSMRMNDEP 739


>gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 490

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++  G V  +++FGAFV
Sbjct: 168 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFV 227

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 228 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQ 286



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 246 IDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQE-----DPWQTFARTHAIGQVVPG 300

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  G  V+VK++D D +R +I 
Sbjct: 301 KVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRIS 360

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 361 LSLKQANE 368



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++  +V I+D GT         ++ AA +      +      I +G +VKV      +  
Sbjct: 7   RSVPQVAINDIGT-------AEDLLAAIDATIKNFND---GDIVEGTIVKVDRDEVLLDI 56

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
               +G++   +LS +     S+VV  GD V   +L   D  G++ LS K   
Sbjct: 57  GYKTEGVIPSRELSIKHDVDPSEVVSLGDVVEALVLQKEDKEGRLILSKKRAQ 109


>gi|220934715|ref|YP_002513614.1| ribosomal protein S1 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996025|gb|ACL72627.1| ribosomal protein S1 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 558

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 92/213 (43%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +  +      G T +  +      +   +  A++  +     I  ++    +     +
Sbjct: 68  VEVALESPEDGFGETRLSREKAKRAKAWERLETAMESDQTITGMISGKVKGGFTVELGDI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   + GK +   + +   + N      V ++  ++ E E +
Sbjct: 128 RAFLPGSL---VDVRPVRDTAYLEGKELEFKLIKLDQRRN-----NVVVSRRAVVEKEYS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E   + KG V  + D+GAF+   G  DGL+HI+ ++ +RV   S+VV+ 
Sbjct: 180 AERDELLKNLQEG-MVLKGIVKNLTDYGAFLDL-GGIDGLLHITDMAWKRVKHPSEVVEI 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  + VK+L FD +R ++ L +K +  +  + I
Sbjct: 238 GQEIEVKVLKFDRERNRVSLGLKQLGDDPWENI 270



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT    +     G+V  + D+G FV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWENITRRYPIGSRLFGKVTNITDYGCFVEIEDGVEGLVHVSEMDWTNKNIAPNKMVAV 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +LD D +R +I L +K    N    
Sbjct: 325 GDEVEVMILDIDEERRRISLGIKQCKANPWDE 356



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++   +         I KG V +V    A V    + DG++  S+LS +RV     V+  
Sbjct: 438 KDPFSNFVAEHAKGSIVKGVVKEVDAKAAIVELADSVDGVLRASELSRDRVEDVRSVLNV 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVD 691
           GDTV  K +  D + + + LS+K  D
Sbjct: 498 GDTVEAKFMGVDRKNRTVTLSIKAKD 523



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 90/259 (34%), Gaps = 44/259 (16%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S +  +  ++++  +  +       
Sbjct: 197 GIVKNLTDYGAFLDLGGIDGLLHITDMAWKRVKHPSEVVEIGQEIEVKVLKFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +    +    P    +      I +      I  G + +  +
Sbjct: 250 ---RERNRVSLGLKQLGDDPWENITRRYPIGSRLFGKVTNITDYGCFVEIEDGVEGLVHV 306

Query: 578 VEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            E                        ++ID++           +                
Sbjct: 307 SEMDWTNKNIAPNKMVAVGDEVEVMILDIDEERRRISLGIKQCKAN----PWDEFAATHN 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLD 676
             +   G +  + DFG FV   G  DGLVH+S LS   +     V   K+GD +   +L 
Sbjct: 363 KGEKVSGVIKSITDFGIFVGLDGGIDGLVHLSDLSWN-MEGEEAVRNYKKGDEIEAVVLA 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K +D++ 
Sbjct: 422 VDPERERISLGVKQLDKDP 440


>gi|162382312|ref|YP_662036.2| 30S ribosomal protein S1 [Pseudoalteromonas atlantica T6c]
          Length = 557

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A    +  +  I  ++    +    
Sbjct: 66  DQVDVALDAIEDGFGETILSREKAKRHEAWVELEKAYDDKETIKGVINGKVKGGFTVEVN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +  AK N      V ++  ++ E E
Sbjct: 126 TVRAFLPGSL---VDVRPVRDTTHLEGKELEFKVIKLDAKRN-----NVVVSRRAVIEAE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           ++ E  + + ++ E +++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 SSAERDQLLANLEEGHEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD ++ ++ L MK +  +  + I 
Sbjct: 236 NVGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-ITDVPEVNKIY------K 624
            +    V+     VN+ D+  VK+      +   +  M +       E+ + Y       
Sbjct: 222 DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLS 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G V  + D+G FV      +GLVH+S++    +    S VV  GDTV V +L+ D+ R +
Sbjct: 282 GAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVMVLEIDEERRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 342 ISLGLKQCKPNPWEE 356



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 130/361 (36%), Gaps = 64/361 (17%)

Query: 366 LSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
           ++G  +  F +  N    FLP +  +V  +            L  + +   + +      
Sbjct: 112 INGKVKGGFTVEVNTVRAFLPGSLVDVRPVRDT-------THLEGKELEFKVIKLDAKRN 164

Query: 422 TLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + +VS   + E++ S+    +    LA ++ G  +         G+VK+  D+    D+
Sbjct: 165 NV-VVSRRAVIEAESSAERDQL----LANLEEGHEVK--------GIVKNLTDYGAFVDL 211

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M +K     S I  +  ++ +  +  +          + +  +   M +
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFD----------KEKSRVSLGMKQ 261

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNIDDDGT 592
           + ++   ++ E  P    ++     + +      I  G + +  + E      NI     
Sbjct: 262 MGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKV 321

Query: 593 VKIASSSLAEIEAARE---------------MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           V +  +    +    E                               G++  + DFG F+
Sbjct: 322 VNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIKSITDFGIFI 381

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              G  DGLVH+S +S  +     D V+E   GD +   +L  D +R +I L +K ++++
Sbjct: 382 GLDGGIDGLVHLSDISWNKTG--EDAVREYKKGDEISAVVLQVDPERERISLGVKQIEED 439

Query: 694 T 694
            
Sbjct: 440 P 440



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I  G V +V   G  V      +G +  + L+ ERV   S+V   G
Sbjct: 439 DPFNQYLTDTKKGTIVVGTVTEVDAKGVTVKLAEEVEGYIRATDLARERVEDASEVASVG 498

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQNTGKP 697
           D +  K +  D + +I  LS+K  DQ   K 
Sbjct: 499 DEIEAKFMGVDRKNRIVNLSVKAKDQADEKE 529


>gi|327485186|gb|AEA79593.1| Transcription accessory protein (S1 RNA-binding domain) [Vibrio
           cholerae LMA3894-4]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDLQRKRIALSMR-LNDEPGQD 728


>gi|289551693|ref|YP_003472597.1| ribosomal protein S1 domain-containing RNA binding protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|315660324|ref|ZP_07913177.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
 gi|289181224|gb|ADC88469.1| ribosomal protein S1 domain-containing RNA binding protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|315494613|gb|EFU82955.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
          Length = 132

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSIGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS+K       +P
Sbjct: 64  ADDGKISLSIKKAKDRPRRP 83


>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
          Length = 499

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS   +     ++ KG V  +++FGAFV 
Sbjct: 175 ELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD 234

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 235 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWR 292



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + +I  G
Sbjct: 252 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWRQFARTHAIGQIVPG 306

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+    V VK++D D +R +I 
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRIS 366

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 367 LSLKQANE 374



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 44  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKEDK 103

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 104 EGRLILSKKRAQ 115


>gi|212635293|ref|YP_002311818.1| 30S ribosomal protein S1 [Shewanella piezotolerans WP3]
 gi|212556777|gb|ACJ29231.1| Ribosomal protein S1 [Shewanella piezotolerans WP3]
          Length = 555

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 93/213 (43%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            H+         G T +  +      +  ++  A + A+     I  ++    +     +
Sbjct: 68  VHVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   +  K +   V +   K N      V ++  ++ E E++
Sbjct: 128 RAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESESS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 180 AERDALLENLQEGQSV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKTNPWDD 356



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +            +  
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWDDFAERF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  G++  + DFG F+   G  DGLVH+S +S            K+GD +   +L 
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVAEYKKGDEINAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686
             V   G  +      +G + +S +S ER+   S V   GD V  K +  D + + I LS
Sbjct: 459 TAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDKVESKFMGVDRKNRTISLS 518

Query: 687 MKVVDQNTGKP 697
           ++  D+   K 
Sbjct: 519 IRAKDEAEEKE 529


>gi|322804444|emb|CBZ01994.1| transcription accessory protein (S1 RNA-binding domain)
           [Clostridium botulinum H04402 065]
          Length = 718

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DQKRNRISLSMK 717


>gi|311030567|ref|ZP_07708657.1| 30S ribosomal protein S1 [Bacillus sp. m3-13]
          Length = 380

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   V ++ +    I S      E  +     + D  E  ++ +G V ++ DFGAFV   
Sbjct: 149 TFKVVELEKEKNRVILSHRAVVEEEMQNKKHELLDTIETGQVLEGTVQRITDFGAFVDI- 207

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  DGLVHISQLS E V K SDVV EG  V VK+L  D D  +I LS+K       
Sbjct: 208 GGVDGLVHISQLSYEHVGKPSDVVTEGQKVNVKVLSVDRDNERISLSIKETLPGPW 263



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + +G V +++ FGAFV      +GLVHISQ+S + +    +V+ EGD V VK+LD ++  
Sbjct: 275 VTEGVVKRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLTEGDKVQVKVLDVNEAD 334

Query: 681 GKIKLSMK 688
            +I LS++
Sbjct: 335 QRISLSIR 342



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           +M +   +  EV     G V KV +    V   G++ DG++ IS+LS+  V K +DVV E
Sbjct: 4   DMNQVEVNNLEVGNTVTGTVTKVEEKQVLVSIEGSKLDGIIPISELSSLHVEKATDVVSE 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           G  + +K+   ++   + LS K VD +
Sbjct: 64  GQELQLKVTKVEEELLV-LSKKAVDAD 89


>gi|296201537|ref|XP_002748076.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1
           [Callithrix jacchus]
          Length = 1216

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 248 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 307

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 308 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 342


>gi|212533317|ref|XP_002146815.1| RNA helicase-like splicing factor (HRH1), putative [Penicillium
           marneffei ATCC 18224]
 gi|210072179|gb|EEA26268.1| RNA helicase-like splicing factor (HRH1), putative [Penicillium
           marneffei ATCC 18224]
          Length = 1227

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DG 645
           D    +       +    R     I D P + K Y G+V  V DFGAFV+  G R   DG
Sbjct: 228 DKHERRSRRDQDDDDYFRRPPTPEIDDQPVLYKTYDGRVTGVKDFGAFVNLQGVRGKVDG 287

Query: 646 LVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           LVH+S +    RV   SD+V  G  V VK++      +I LSMK VDQ TG+ ++
Sbjct: 288 LVHVSAMQEGARVNHPSDLVSRGQLVKVKVVSI-QGTRIGLSMKEVDQVTGRDLI 341


>gi|158256760|dbj|BAF84353.1| unnamed protein product [Homo sapiens]
          Length = 1220

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14]
 gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14]
          Length = 496

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 363 LSLKQANESFGAD 375



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|123236580|emb|CAM22646.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|123239590|emb|CAM24249.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
          Length = 1175

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 223 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 282

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 283 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 317


>gi|323526954|ref|YP_004229107.1| 30S ribosomal protein S1 [Burkholderia sp. CCGE1001]
 gi|323383956|gb|ADX56047.1| ribosomal protein S1 [Burkholderia sp. CCGE1001]
          Length = 577

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVEGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S+++ +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGTVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMIINIDRKSRGINLSIKAKD 538



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     +     +G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF----KKGDKLQGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|229521790|ref|ZP_04411208.1| transcription accessory protein [Vibrio cholerae TM 11079-80]
 gi|229341384|gb|EEO06388.1| transcription accessory protein [Vibrio cholerae TM 11079-80]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDLQRKRIALSMR-LNDEPGQD 728


>gi|91224986|ref|ZP_01260245.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01]
 gi|91190232|gb|EAS76502.1| hypothetical protein V12G01_11208 [Vibrio alginolyticus 12G01]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMRMNDEP 725


>gi|332970684|gb|EGK09665.1| 30S ribosomal protein S1 [Kingella kingae ATCC 23330]
          Length = 557

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +          +  A++  +     I  ++   L+    
Sbjct: 65  DFVTVTIESVENGFGETKLSREKARRAADWIALEEAMEDGEILSGVINGKVKGGLTVMIN 124

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   I++     GK I   V +   K N      V ++  ++ E  
Sbjct: 125 SIRAFLPGSLLDVRP---IKDTSHFEGKEIEFKVIKLDRKRN-----NVVVSRRAVLEAT 176

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E    + ++ E   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 177 LGEERKALMENLQEG-TIVKGIVKNLTDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVL 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD D+ ++ L +K + ++  
Sbjct: 235 EMGQEVEAKVLKFDQDKQRVSLGLKQLGEDPW 266



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +      +    G+V  + ++GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWDGLARRYPQSTRLFGKVSNLTEYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +LD D D+ +I L MK    N  K 
Sbjct: 324 GDEVEVMILDIDEDKRRISLGMKQCQSNPWKD 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +    ++   +     + +KI KG V  + DFG F+   G  D
Sbjct: 332 LDIDEDKRRISLGMKQCQSNPWKDFEANY---SKGDKI-KGAVKSITDFGVFIGLPGNID 387

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 388 GLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDP 439



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG    V   GA +      +G +  S+  +ERV   +  +KEGD V   +++ D + 
Sbjct: 452 LVKGAAKSVEAKGAVIALADEVEGYLPASEFDSERVEDLTTKLKEGDEVEAVIVNVDRKN 511

Query: 682 K-IKLSMKVVD 691
           + IKLS+K  D
Sbjct: 512 RSIKLSVKAKD 522


>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
 gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
          Length = 495

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS   +     ++ KG V  +++FGAFV 
Sbjct: 174 ELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD 233

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 234 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWR 291



 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + +I  G
Sbjct: 251 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWRQFARTHAIGQIVPG 305

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+ G  V VK++D D +R +I 
Sbjct: 306 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRIS 365

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 366 LSLKQANE 373



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 43  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKEDK 102

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 103 EGRLILSKKRAQ 114


>gi|226947398|ref|YP_002802489.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841768|gb|ACO84434.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 718

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DQKRNRISLSMK 717


>gi|168177509|ref|ZP_02612173.1| RNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182670333|gb|EDT82307.1| RNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 718

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DQKRNRISLSMK 717


>gi|73965613|ref|XP_857363.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
           isoform 3 [Canis familiaris]
          Length = 1163

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 195 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 254

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 255 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 289


>gi|253580013|ref|ZP_04857280.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848532|gb|EES76495.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 719

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++   +G+G   +R IV++      +  DD    I  S + E++  +E           
Sbjct: 597 KKMAAELGIGEITLRDIVKELEKPARDPRDDMPKPILRSDVLEMKDLKE----------- 645

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + KG V  V+DFGAFV     +DGLVHIS+++   +    + V  GD V V+++  D 
Sbjct: 646 GMVLKGTVRNVIDFGAFVDIGVHQDGLVHISEMTERFIKHPLEAVSVGDIVDVRVIGVDM 705

Query: 679 DRGKIKLSMKVVDQ 692
            + +I LSMK +++
Sbjct: 706 KKKRISLSMKGLNK 719


>gi|288941369|ref|YP_003443609.1| 30S ribosomal protein S1 [Allochromatium vinosum DSM 180]
 gi|288896741|gb|ADC62577.1| ribosomal protein S1 [Allochromatium vinosum DSM 180]
          Length = 560

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G+T +  +      + + +  A + A+  +  I  ++    +    
Sbjct: 66  DEVEVALDAVEDGFGVTRLSREKAKRFAAWDYLEKAFENAETVKGLINGKVKGGFTVDLG 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK     V +   K N      V ++  ++ E E
Sbjct: 126 TVRAFLPGSL---VDVRPVRDTTYLEGKEQEFKVIKLDRKRN-----NVVVSRRAVVEEE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAF+   G  DGL+HI+ ++  RV   S+VV
Sbjct: 178 YSAERDQLLKNLEEGMEV-KGVVKNLTDYGAFLDL-GGIDGLLHITDMAWRRVKHPSEVV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + GD + VK+L FD +R ++ L +K + ++    I
Sbjct: 236 EIGDEISVKVLKFDRERQRVSLGLKQMGEDPWVNI 270



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYK 624
            +    V+     V I D+ +VK+               +   +   +I+     +    
Sbjct: 222 DMAWRRVKHPSEVVEIGDEISVKVLKFDRERQRVSLGLKQMGEDPWVNISRRYPESTRVF 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D+ R +
Sbjct: 282 GKVTNIADYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEERRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 342 ISLGIKQCAMNPWEE 356



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 89/254 (35%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S +  +        IS  ++     
Sbjct: 197 GVVKNLTDYGAFLDLGGIDGLLHITDMAWRRVKHPSEVVEIG-----DEISVKVLKF--- 248

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++  +  + +    P    +      I +      I  G + +  +
Sbjct: 249 --DRERQRVSLGLKQMGEDPWVNISRRYPESTRVFGKVTNIADYGCFVEIEEGVEGLVHV 306

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEVNKI 622
            E      NI     V +       +               + A           +    
Sbjct: 307 SEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGIKQCAMNPWEEFAVTHKKGDH 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
             G++  + DFG F+   G  DGLVH+S +S +          K+GD +   +L  D +R
Sbjct: 367 VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWDEAGENALRRYKKGDELETVVLSVDPER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K +D++ 
Sbjct: 427 ERISLGVKQLDKDP 440



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++   S   + E   +  G V +V   GA +      +G +  S++S +RV     V+K 
Sbjct: 438 KDPFSSFVALHEKGSVVTGVVAEVDAKGATITLGEGVEGYLRASEISRDRVEDARAVLKV 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVD 691
           G+ +  K L  D + + + LSMK  D
Sbjct: 498 GEEIEAKFLGVDRKNRTLSLSMKAKD 523


>gi|256371862|ref|YP_003109686.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 427

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITD 615
            +   ++R++    G+ I        AK+   D G   +  S  A +E   R+       
Sbjct: 168 HVDLRRVRDLAPFVGQDIE-------AKIIELDRGRNNVVLSRRAYLEENQRDQRERFLT 220

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                ++ KG V  ++ FG FV   G  DGLVH+S+LS   V   S VV  GD V V +L
Sbjct: 221 SIRPGEVRKGVVSSIVHFGVFVDLGGM-DGLVHVSELSWNHVDHPSSVVSVGDEVQVLVL 279

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           + D +  +I LS+K   ++  + 
Sbjct: 280 EVDQEHERISLSLKATQRDPWQE 302



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+  +      ++ ++  G+V K++ FG FV      +GLVHIS+++   V     VV 
Sbjct: 296 QRDPWQEFASAHKIGELVYGRVTKIVPFGCFVQVAPGIEGLVHISEMALHHVDLPEQVVS 355

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
            G+ +WVK++D D  R +I LS++   +
Sbjct: 356 VGEELWVKIIDLDPGRRRISLSIRQALE 383



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I  G VVKV      +      +G++ + +LS  +    +DVV  GD +   +L  +DR
Sbjct: 53  DIVSGLVVKVDKDEVLLDIGYKSEGVIPLRELSIRKDVSPADVVSVGDRIDALVLQKEDR 112

Query: 681 -GKIKLSMKVVD-QNTGKPI 698
            G++ LS K    +   K I
Sbjct: 113 EGRLVLSKKRAQFEKAWKEI 132


>gi|209519344|ref|ZP_03268143.1| ribosomal protein S1 [Burkholderia sp. H160]
 gi|295677277|ref|YP_003605801.1| ribosomal protein S1 [Burkholderia sp. CCGE1002]
 gi|209500228|gb|EEA00285.1| ribosomal protein S1 [Burkholderia sp. H160]
 gi|295437120|gb|ADG16290.1| ribosomal protein S1 [Burkholderia sp. CCGE1002]
          Length = 577

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVEGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +  G V  V   GA V   G  +G +  S+++ +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSVVDGTVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMIINIDRKSRGINLSIKAKD 538



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-SGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|153941426|ref|YP_001389539.1| RNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152937322|gb|ABS42820.1| RNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295317637|gb|ADF98014.1| RNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 718

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DKKRNRISLSMK 717


>gi|21220480|ref|NP_626259.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|256788388|ref|ZP_05526819.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
 gi|289772280|ref|ZP_06531658.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
 gi|5689891|emb|CAB52054.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|289702479|gb|EFD69908.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
          Length = 502

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|319405005|emb|CBI78614.1| 30S ribosomal protein S1 [Bartonella sp. AR 15-3]
          Length = 566

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +V++ ++A+R    I  E     + +R++   F+       +  D     +      IR 
Sbjct: 88  IVLSREKARREESWIRLEEK-FNAGTRIEGIIFSQVKGGFTVDLDGAVAFLPRSQVDIRP 146

Query: 577 IVEQTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVV 628
           I +           ++   D     I  S  A +E +R   RS      E N+I +G V 
Sbjct: 147 IRDVAPLMHNSQLFEILKMDRRRGNIVVSRRAVLEESRAEQRSEIVQNLEENQIVEGIVK 206

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + D+GAFV   G  DGL+H++ ++  R+   S+++  G T+ V+++  + D  +I L M
Sbjct: 207 NITDYGAFVDL-GGIDGLLHVTDIAWRRINHPSEILTIGQTIKVQIIRINQDTHRISLGM 265

Query: 688 KVVDQNTGKPI 698
           K ++ +    I
Sbjct: 266 KQLENDPWNNI 276



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+ D           E +         T  P   KI  G V  + D+G FV      +
Sbjct: 252 IRINQDTHRISLGMKQLEND---PWNNINTKYPVGKKI-TGAVTNITDYGGFVEIEPGIE 307

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  ++      ++     V V +L+ D  + +I L +K   +N  
Sbjct: 308 GLIHVSEMSWTKKNIHPGKLLSISQKVEVVILEIDSSKRRISLGLKQTSENPW 360



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 34/259 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     S I  +   +K+  I          
Sbjct: 203 GIVKNITDYGAFVDLGGIDGLLHVTDIAWRRINHPSEILTIGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ ++    +    P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLENDPWNNINTKYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K NI     + I+      I                 +     +  +   VN  
Sbjct: 313 SEMSWTKKNIHPGKLLSISQKVEVVILEIDSSKRRISLGLKQTSENPWVAFANKFPVNSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
             G++    +FG F+   G  DG+VH+S L   R   +  D+  +GDTV   +LD D ++
Sbjct: 373 ITGEIKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDMYNKGDTVRAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            +I L +K +  +  K  V
Sbjct: 433 ERISLGIKQLSSDKMKEAV 451



 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I   +V+ + + G  V       +  +  + L+ +R  +  +    G  V  ++  FD +
Sbjct: 461 IVTCEVIGINENGIDVKLIEHDLEITIRRTDLARDRDEQRPERFAIGQKVDAQVTAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + + +S+K ++    K  V
Sbjct: 521 TRKLSVSIKALEIAEEKEAV 540


>gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
 gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
          Length = 499

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +R+      +  ++  G V  +++FGAFV
Sbjct: 165 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQKGQVRSGVVSSIVNFGAFV 224

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 225 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 283



 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +       + ++  G
Sbjct: 243 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQHFARTHAIGQVVPG 297

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  G  ++VK++D D +R +I 
Sbjct: 298 KVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQVVTVGSDIFVKVIDIDLERRRIS 357

Query: 685 LSMKVVDQN 693
           LS+K  +++
Sbjct: 358 LSLKQANED 366



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +      +VVK GD V   +L   D 
Sbjct: 35  DIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDDVEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 95  EGRLILSKKRAQ 106


>gi|169632219|ref|YP_001705955.1| hypothetical protein ABSDF0251 [Acinetobacter baumannii SDF]
 gi|169151011|emb|CAO99648.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 794

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  IDD   +      LAE+E               RE 
Sbjct: 590 VKDIIGNT-----EIIRQVKAEEFIDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 644

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 645 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 703

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 704 VQVRVMQVDVERNRVNLSMRA 724


>gi|327478939|gb|AEA82249.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri DSM
           4166]
          Length = 772

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A    + IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAQDTGRDIRSLIGDSAFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L+E++      R      E               + +G V
Sbjct: 599 --DPKQFTDETFGLPTVTDILSELDKPGRDPRPEFKTAEFQDGVEKLSDLEPGMVLEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + V    +VVK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVMVKVMEVDIPRQRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGAK 726


>gi|296159962|ref|ZP_06842782.1| ribosomal protein S1 [Burkholderia sp. Ch1-1]
 gi|295889708|gb|EFG69506.1| ribosomal protein S1 [Burkholderia sp. Ch1-1]
          Length = 577

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 113 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 169

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I +G V  + D+GAF
Sbjct: 170 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVEGVVKNITDYGAF 223

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 224 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 282

Query: 696 KPI 698
           + I
Sbjct: 283 EGI 285



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     +     +G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF----KKGDKLQGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V      +G +  S+++ +RV    +V+K+G
Sbjct: 454 DPFSNFVAMNDKGSIVDGVVKTVDAKGAVVQLSAEVEGYLRASEIAQDRVEDARNVLKDG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMIINIDRKSRGINLSIKAKD 538


>gi|307730620|ref|YP_003907844.1| 30S ribosomal protein S1 [Burkholderia sp. CCGE1003]
 gi|307585155|gb|ADN58553.1| ribosomal protein S1 [Burkholderia sp. CCGE1003]
          Length = 577

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 113 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 169

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I +G V  + D+GAF
Sbjct: 170 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVEGVVKNITDYGAF 223

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 224 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 282

Query: 696 KPI 698
           + I
Sbjct: 283 EGI 285



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S+++ +RV    +V+KEG
Sbjct: 454 DPFSNFVAMNDKGSIVDGVVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMIINIDRKSRGINLSIKAKD 538



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     +     +G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF----KKGDKLQGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|154686535|ref|YP_001421696.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens FZB42]
 gi|154352386|gb|ABS74465.1| YpfD [Bacillus amyloliquefaciens FZB42]
          Length = 382

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +  IV      V +D D    I S      +             
Sbjct: 132 VEAHFVEDFTDYKGKTLSLIV------VELDRDKNRVILSHRAVVEKEQTAKKHDFLQTL 185

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V ++ DFGAFV   G  DGLVHISQLS   V K SDVV+EG  V VK+L  
Sbjct: 186 EVGSVLEGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSV 244

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D D  +I LS+K       
Sbjct: 245 DRDNERISLSIKETLPGPW 263



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               + +  +   + +G+V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSQVGEKVKQGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           TV VK+LD ++   +I LSM+ +++  
Sbjct: 322 TVKVKVLDVNESEERISLSMRELEEAP 348



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVVK 
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIVNVKQSGIIPISELSSLHVEKASDVVKV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
            D + +K+   +D   I LS + VD +
Sbjct: 64  DDELDLKVTKVEDDALI-LSKRAVDAD 89


>gi|149054338|gb|EDM06155.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Rattus norvegicus]
          Length = 1242

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 274 KHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 333

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 334 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 368


>gi|186475511|ref|YP_001856981.1| 30S ribosomal protein S1 [Burkholderia phymatum STM815]
 gi|184191970|gb|ACC69935.1| ribosomal protein S1 [Burkholderia phymatum STM815]
          Length = 589

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 126 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 182

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I +G V  + D+GAF
Sbjct: 183 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVEGVVKNITDYGAF 236

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 237 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 295

Query: 696 KPI 698
           + I
Sbjct: 296 EGI 298



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 293 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 352

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 353 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 384



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     +     +G +  + DFG F+   G  D
Sbjct: 361 LEIDEDRRRISLGMKQCKPNPWDDFSRNF----KKGDKLQGAIKSITDFGVFIGLPGGID 416

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 417 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 468



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V      +G +  S+++ +RV    +V+KEG
Sbjct: 467 DPFSNFVAMNDKGSIVDGVVKTVDAKGAVVQLTADVEGYLRASEIAQDRVEDARNVLKEG 526

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 527 DKVNAMIINIDRKSRGINLSIKAKD 551


>gi|227329718|ref|ZP_03833742.1| putative RNA binding protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 777

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 711 RKRIALTMR-LDEQPG 725


>gi|157963826|ref|YP_001503860.1| RNA-binding S1 domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157848826|gb|ABV89325.1| RNA binding S1 domain protein [Shewanella pealeana ATCC 700345]
          Length = 803

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +++ I +G V  V +FGAFV     +DGLVHIS ++ + +     VVK GD V 
Sbjct: 665 EEIKDLKLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVKAGDIVK 724

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D +R +I LSM++ D+    P
Sbjct: 725 VKVMEVDAERRRIGLSMRLDDKAGDAP 751


>gi|187924977|ref|YP_001896619.1| 30S ribosomal protein S1 [Burkholderia phytofirmans PsJN]
 gi|91688765|gb|ABE31965.1| SSU ribosomal protein S1P [Burkholderia xenovorans LB400]
 gi|187716171|gb|ACD17395.1| ribosomal protein S1 [Burkholderia phytofirmans PsJN]
          Length = 577

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 113 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 169

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I +G V  + D+GAF
Sbjct: 170 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVEGVVKNITDYGAF 223

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 224 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 282

Query: 696 KPI 698
           + I
Sbjct: 283 EGI 285



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     +     +G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF----KKGDKLQGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V      +G +  S+++ +RV    +V+K+G
Sbjct: 454 DPFSNFVAMNDKGSIVDGVVKTVDAKGAVVQLSAEVEGYLRASEIAQDRVEDARNVLKDG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMIINIDRKSRGINLSIKAKD 538


>gi|320449448|ref|YP_004201544.1| S1 domain-containing protein [Thermus scotoductus SA-01]
 gi|320149617|gb|ADW20995.1| S1 domain protein [Thermus scotoductus SA-01]
          Length = 125

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 45/76 (59%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   + +G+VV+V DFGAFV   G   GLVHISQ++ E V    D + EGD V V +
Sbjct: 1   MELEAGSVVEGRVVRVTDFGAFVELPGGEQGLVHISQIAHEFVRNVRDFLNEGDIVQVMV 60

Query: 675 LDFDDRGKIKLSMKVV 690
              D +G++ LS+K +
Sbjct: 61  KGRDAKGRLDLSIKDL 76


>gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78]
 gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG]
 gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF]
 gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78]
          Length = 504

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|239931899|ref|ZP_04688852.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
 gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
 gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  +++ G  
Sbjct: 363 LSLKQANESFGAD 375



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|197102406|ref|NP_001126950.1| ATP-dependent RNA helicase DHX8 [Pongo abelii]
 gi|55733262|emb|CAH93314.1| hypothetical protein [Pongo abelii]
          Length = 1127

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 159 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 218

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 219 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 253


>gi|308049649|ref|YP_003913215.1| 30S ribosomal protein S1P [Ferrimonas balearica DSM 9799]
 gi|307631839|gb|ADN76141.1| SSU ribosomal protein S1P [Ferrimonas balearica DSM 9799]
          Length = 556

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 11/216 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +   +  A ++ +     I  ++    +    
Sbjct: 66  SEVDVALDAVEDGFGETQLSREKAKRHEAWVRLEKAAEEQETVIGVINGKVKGGFTVELE 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+   + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTTHLEGKDLEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSVEREQLLENLAEGQEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 236 NVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVSIA 271



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   + V  E  L+       V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSVEREQLLENLAEGQEVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +   SI +      
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVSIANRYPEGA 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD+V V +LD D +
Sbjct: 279 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDSVEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGLKQCKANPWEE 356



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G +  V   GA V      +G + ++ +S +R+   S V+  G++V  K +  D + 
Sbjct: 453 IVTGTITAVDAKGATVELGENIEGYIRVADISRDRIEDASTVLSVGESVEAKFMGVDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D+   K  +
Sbjct: 513 RNISLSIKAKDEAEEKEAI 531



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +               
Sbjct: 316 IHPSKVVNL----GDSVEVMV------LDIDEERRRISLGLKQCKAN----PWEEFARNF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S    A   D V+E   G+ +   +
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWN--ATGEDAVREYKKGEEISAVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++++ 
Sbjct: 420 LSVDPERERISLGVKQIEEDP 440


>gi|194754421|ref|XP_001959493.1| GF12026 [Drosophila ananassae]
 gi|190620791|gb|EDV36315.1| GF12026 [Drosophila ananassae]
          Length = 1251

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEG 667
           ++TD PE  KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV   
Sbjct: 286 AMTDDPEAGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVSRN 345

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             V VK++    + K+ LSMK VDQ +G+ +
Sbjct: 346 QAVKVKVMSITGQ-KVSLSMKEVDQESGRDL 375


>gi|161621315|ref|YP_560017.2| 30S ribosomal protein S1 [Burkholderia xenovorans LB400]
          Length = 571

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVEGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     +     +G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF----KKGDKLQGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V      +G +  S+++ +RV    +V+K+G
Sbjct: 448 DPFSNFVAMNDKGSIVDGVVKTVDAKGAVVQLSAEVEGYLRASEIAQDRVEDARNVLKDG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMIINIDRKSRGINLSIKAKD 532


>gi|330877229|gb|EGH11378.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
          pv. morsprunorum str. M302280PT]
          Length = 71

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 2  FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETV-VLATVVYDRSLKDGQDFFPLT 60
           +    + ++    + LETGRIARQ+ GAVL T  + V VL TVV  +    G+ FFPL+
Sbjct: 1  MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60

Query: 61 VNYQERTYAVG 71
          V+YQE+TYA G
Sbjct: 61 VHYQEKTYAAG 71


>gi|325129123|gb|EGC51971.1| S1 RNA binding domain protein [Neisseria meningitidis N1568]
 gi|325133149|gb|EGC55820.1| S1 RNA binding domain protein [Neisseria meningitidis M6190]
 gi|325138765|gb|EGC61317.1| S1 RNA binding domain protein [Neisseria meningitidis ES14902]
          Length = 757

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|315633973|ref|ZP_07889262.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393]
 gi|315477223|gb|EFU67966.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393]
          Length = 548

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   +   P     +++G     +   V +   K N      V ++  ++ E E+
Sbjct: 127 VRAFLPGSLVDTRPVRDADHLLGK---ELEFKVIKLDQKRN-----NVVVSRRAVIESES 178

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +++    + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V 
Sbjct: 179 SQDREEVLANLSEGAEV-KGTVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVN 236

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            GD + VK+L FD DR ++ L +K + Q+    I 
Sbjct: 237 VGDEIIVKVLKFDKDRTRVSLGLKQLGQDPWAAIA 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   VN    G+V  + D+G FV      +GLVH+S++    +    S VV 
Sbjct: 264 QDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVS 323

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD V V +L+ D +R +I L +K    N  
Sbjct: 324 LGDVVEVMVLEIDEERRRISLGLKQCKANPW 354



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 127/369 (34%), Gaps = 64/369 (17%)

Query: 359 DEQ--YVDSLSGTQRNDFMMHYN----FLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
           DEQ   +  ++G  +  F +  N    FLP +  +   +            L  + +   
Sbjct: 103 DEQATVLGLVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDAD-------HLLGKELEFK 155

Query: 413 LPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
           + +  Q    + +VS   + ES+ S     V    LA +  G  +         G VK+ 
Sbjct: 156 VIKLDQKRNNV-VVSRRAVIESESSQDREEV----LANLSEGAEVK--------GTVKNL 202

Query: 471 DDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
            D+    D+ G +   H+  M +K     S I  +  ++ +  +  +          + R
Sbjct: 203 TDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIIVKVLKFD----------KDR 252

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGA 583
             +   + ++  +    + E  P    +      + +      I  G + +  + E    
Sbjct: 253 TRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWT 312

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKGQVV 628
             NI     V +       +    E  R                  +         G++ 
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKANPWAQFAETHNKGDKVVGKIK 372

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFDD-RGKIKL 685
            + DFG F+   G  DGLVH+S +S   V     V   K+GD V   +L  D  + +I L
Sbjct: 373 SITDFGIFIGLDGGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVKERISL 431

Query: 686 SMKVVDQNT 694
            +K ++++ 
Sbjct: 432 GIKQLEEDP 440



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +   +VV+    GA V   G  +G +  + L+ E        V  G
Sbjct: 439 DPFNNFVAINKKGTVLNAKVVEADAKGAKVELDGGVEGYIRAADLTNE--------VAAG 490

Query: 668 DTVWVKLLDFDDRGKI-KLSMKVVDQ 692
           D +  K    D + +I  LS++  DQ
Sbjct: 491 DVIEAKYTGVDRKARIVHLSVRAKDQ 516


>gi|307822523|ref|ZP_07652754.1| Tex-like protein [Methylobacter tundripaludum SV96]
 gi|307736127|gb|EFO06973.1| Tex-like protein [Methylobacter tundripaludum SV96]
          Length = 760

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 76/185 (41%), Gaps = 12/185 (6%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ-IRNVIGM-----GGK 572
            A +QA  G L I+N  + +  ++     E  P VE +     + IR++IG      G  
Sbjct: 542 KAYEQA-AGFLRIMNGDNPL--DASSVHPEAYPVVEAIIAETGKSIRDLIGQSQFLRGLN 598

Query: 573 VIRGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
                 E  G     +I  +                 +         EV     G V  V
Sbjct: 599 PANYTNEHFGLPTVTDILQELEKPGRDPRPEFKSVEFKAGIEKITDLEVGMRLDGVVTNV 658

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            +FGAFV     +DGLVHIS LS   V    D VK GD V VK+L+ D +R +I LSMK 
Sbjct: 659 ANFGAFVDIGVHQDGLVHISHLSDTFVKDPRDAVKTGDMVKVKVLEVDVERKRISLSMKT 718

Query: 690 VDQNT 694
             + +
Sbjct: 719 NPEAS 723


>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
 gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
          Length = 441

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +  S    +E AR+  R       +V    +G V  +++FGAFV   G  DGLV
Sbjct: 175 DRNRNNVVLSRRVVLEEARKAERQDILGKLKVGMKLQGTVSSIVEFGAFVDL-GGIDGLV 233

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           HIS+LS   V   S+VVK G  V V++LD D +R +I L +K   ++  + +V
Sbjct: 234 HISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTEDPWRVLV 286



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R +     V+ I +G V K++ FGAFV      +GLVHIS+++ + V   S V   G
Sbjct: 280 DPWRVLVSKFPVDAIVEGTVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVTAPSQVCTVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D V VK+++ D DR +I LSMK   +  G  I
Sbjct: 340 DKVQVKVMEIDLDRRRISLSMKAAAETLGIDI 371



 Score = 44.5 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      +      +G++   +LS  +  + S++V  GD +   +L   D 
Sbjct: 35  DLVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSELVHMGDEIEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD-QNTGKPI 698
            G++ LS K  + + + K +
Sbjct: 95  EGRLVLSKKRAEYERSWKAV 114


>gi|254252927|ref|ZP_04946245.1| Ribosomal protein S1 [Burkholderia dolosa AUO158]
 gi|124895536|gb|EAY69416.1| Ribosomal protein S1 [Burkholderia dolosa AUO158]
          Length = 596

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 133 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 189

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I  G V  + D+GAF
Sbjct: 190 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVNGVVKNITDYGAF 243

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 244 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 302

Query: 696 KPI 698
           + I
Sbjct: 303 EGI 305



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 300 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 359

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 360 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 391



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 368 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 423

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 424 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAVVLGIDVEKERISLGIKQLEGDP 475



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +  G V  V   GA +   G  +G +  S++S +RV    +V+KEG
Sbjct: 474 DPFSNYVAMNDKGSLVDGVVKSVDAKGAVITLTGDVEGYLRASEISQDRVEDARNVLKEG 533

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 534 DKVNAMVINIDRKSRGINLSIKAKD 558


>gi|72119667|gb|AAZ61930.1| SSU ribosomal protein S1P [Ralstonia eutropha JMP134]
          Length = 592

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 169 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 223

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 224 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 281

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 282 DQEKNRVSLGVKQLGEDPW 300



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 315 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 374

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 375 ISLGMKQCKANPWDD 389



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D   K   S   +   A        +  + +K+  GQ+  + DFG F+   G  D
Sbjct: 366 LDIDED---KRRISLGMKQCKANPWDDFSRNHKKGDKL-SGQIKSITDFGVFIGLPGGID 421

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 422 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSGDP 473



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G +  V   GA V      +G +  S++S +RV    +V+KEG+ +   +++ D + 
Sbjct: 486 LVTGTIKAVDPKGAVVQLADDVEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKS 545

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 546 RNINLSIKAKD 556


>gi|329940857|ref|ZP_08290137.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
 gi|329300151|gb|EGG44049.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
          Length = 499

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VV  GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVAVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
 gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
          Length = 405

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            KV   D    K+  S    +E   E  +       +  ++ +G V ++  FGAFV   G
Sbjct: 161 VKVKELDRENNKVILSQKDVLEEEFESNKQKVMSELQDGQVLEGTVQRLTQFGAFVDV-G 219

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             DGLVH+S+++   V K +DV+ EGD V VK+L  D ++GKI LS+K       +
Sbjct: 220 GVDGLVHVSEIAWSHVEKPADVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWE 275



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIE-------AAREMIRSITDVPEVNKIYKGQVVKV 630
           VE+    ++  D   VK+      + +       AA     +  +      I  G V ++
Sbjct: 235 VEKPADVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRL 294

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           + FGAFV      +GLVHISQ+S + +    +V+KEG  V VK+LD +    ++ LS+K 
Sbjct: 295 VTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRVSLSIKE 354

Query: 690 VDQNTGK 696
            ++   +
Sbjct: 355 TEEAPAQ 361



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            S     + A E    +  +  + K    KG +VK+ D  A+V      DG++ + +LS+
Sbjct: 1   MSEETRNQEAAENQEQLDQIVSLKKGDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSS 60

Query: 655 ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD-QNTGKPI 698
            ++   SD V+ G  V  K++   DD+  + LS + +D +N+ + +
Sbjct: 61  VQLDNASDAVQVGQEVECKVVSINDDKESLVLSKRAIDTENSWEEL 106


>gi|261250556|ref|ZP_05943131.1| transcription accessory protein [Vibrio orientalis CIP 102891]
 gi|260939125|gb|EEX95112.1| transcription accessory protein [Vibrio orientalis CIP 102891]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NSVSDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMRLKDEP 725


>gi|167622183|ref|YP_001672477.1| RNA-binding S1 domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167352205|gb|ABZ74818.1| RNA binding S1 domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 785

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------ 611
           I  D+  +V  + G     +++   AK  I ++  +   +  LAE++      R      
Sbjct: 580 IAADKAVSVAELVGNS--ELIKLLEAKDFITNEFGLPTVTDILAELDKPGRDPRGEFKTA 637

Query: 612 ------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
                       +++ I +G V  V +FGAFV     +DGLVHIS ++ + +     VVK
Sbjct: 638 TFKEGVEEIKDLQLDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSMTDKFIDDPHKVVK 697

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
            GD V VK+++ D +R +I LSM++ D+
Sbjct: 698 AGDIVKVKVMEVDAERRRIALSMRLDDK 725


>gi|160946420|ref|ZP_02093629.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
 gi|158447536|gb|EDP24531.1| hypothetical protein PEPMIC_00380 [Parvimonas micra ATCC 33270]
          Length = 697

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 13/135 (9%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
             I   ++   + +G   ++ I+E+      +I +D    I  S +  IE          
Sbjct: 574 DKINISKLSKELEVGELTLKDIIEELKRPGRDIREDMPKPILRSDVLSIE---------- 623

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV    KG V  V+DFGAFV      DGLVHISQ+S + +   S+V+K  D V VK+
Sbjct: 624 -DLEVGMELKGTVRNVVDFGAFVDIGIKNDGLVHISQISNKYIKHPSEVLKVSDVVKVKI 682

Query: 675 LDFD-DRGKIKLSMK 688
           L+ D ++ K+KL+MK
Sbjct: 683 LEIDLEKQKVKLTMK 697


>gi|329297356|ref|ZP_08254692.1| putative transcriptional accessory protein [Plautia stali symbiont]
          Length = 776

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+++ D  
Sbjct: 651 MVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVDDPHQVVKAGNIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ +D+  G+
Sbjct: 711 RKRIALTMR-LDEQPGE 726


>gi|325197366|gb|ADY92822.1| S1 RNA binding domain protein [Neisseria meningitidis G2136]
          Length = 757

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|296315141|ref|ZP_06865082.1| protein YhgF [Neisseria polysaccharea ATCC 43768]
 gi|296837946|gb|EFH21884.1| protein YhgF [Neisseria polysaccharea ATCC 43768]
          Length = 757

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDVARKRIALTMRLDDEPGG 716


>gi|258620410|ref|ZP_05715448.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587289|gb|EEW12000.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|229527358|ref|ZP_04416750.1| transcription accessory protein [Vibrio cholerae 12129(1)]
 gi|229334990|gb|EEO00475.1| transcription accessory protein [Vibrio cholerae 12129(1)]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDLQRKRIALSMR-LNDEPGQD 728


>gi|257784765|ref|YP_003179982.1| RNA binding S1 domain-containing protein [Atopobium parvulum DSM
           20469]
 gi|257473272|gb|ACV51391.1| RNA binding S1 domain protein [Atopobium parvulum DSM 20469]
          Length = 418

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 4/130 (3%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           G  +   +E    +++ + +  V      L E   A    + I    +V    KG V  +
Sbjct: 160 GAFMGTRIEARVIEMDRNRNNVVLSRRIVLEEARKA--ERQDILGKLQVGMKLKGTVSSI 217

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++FGAFV   G  DGLVHIS+LS   V   S+VVK G  V V++LD D +R +I L +K 
Sbjct: 218 VEFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLKQ 276

Query: 690 VDQNTGKPIV 699
             ++  + +V
Sbjct: 277 TSEDPWRVLV 286



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R +     V+ I +G V K++ FGAFV      +GLVHIS+++ + V   S V K G
Sbjct: 280 DPWRVLVSKYPVDAIIEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKQHVTAPSQVCKVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D V VK+++ D DR +I LSMK   +  G  I
Sbjct: 340 DVVQVKVMEIDLDRRRISLSMKAAAETLGIDI 371


>gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74]
 gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74]
          Length = 504

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 170 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFV 229

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 230 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 288



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  +      ++ ++  G
Sbjct: 248 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQQFARTHQIGQVVPG 302

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+  D ++VK++D D +R +I 
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRIS 362

Query: 685 LSMKVVDQNTGKP 697
           LS+K  ++  G  
Sbjct: 363 LSLKQANEAFGAD 375



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           +     AA +      +      I  G +VKV      +      +G++   +LS +   
Sbjct: 21  NEEAFLAAIDETIKYFND---GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77

Query: 659 KTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             ++VVK GD +   +L   D  G++ LS K   
Sbjct: 78  DPNEVVKVGDEIEALVLQKEDKEGRLILSKKRAQ 111


>gi|170693719|ref|ZP_02884877.1| ribosomal protein S1 [Burkholderia graminis C4D1M]
 gi|170141501|gb|EDT09671.1| ribosomal protein S1 [Burkholderia graminis C4D1M]
          Length = 577

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 113 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 169

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I +G V  + D+GAF
Sbjct: 170 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVEGVVKNITDYGAF 223

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 224 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 282

Query: 696 KPI 698
           + I
Sbjct: 283 EGI 285



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     +     +G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF----KKGDKLQGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V      +G +  S+++ +RV    +V+KEG
Sbjct: 454 DPFSNFVAMNDKGSIVDGVVKTVDAKGAVVQLSTEVEGYLRASEIAQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMIINIDRKSRGINLSIKAKD 538


>gi|170756784|ref|YP_001779803.1| RNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121996|gb|ACA45832.1| RNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 718

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V DFGAFV     +DGLVHISQLS   V    D+VK GD V V++L+ 
Sbjct: 646 KPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 706 DKKRNRISLSMK 717


>gi|153212528|ref|ZP_01948275.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124116399|gb|EAY35219.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|114666959|ref|XP_001154016.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 2 [Pan
           troglodytes]
          Length = 1129

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 161 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 220

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 221 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 255


>gi|330874560|gb|EGH08709.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 773

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +         +   I +G V  V +FGAFV     +DG
Sbjct: 615 DILQELEKPGRDPRPEFKTAAFQDGVEDLKDLQPGMILEGVVTNVTNFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           LVHIS LS + +    + VK GD V VK+++ D  R ++ LSM++ D   G+ I
Sbjct: 675 LVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSD-TPGEKI 727


>gi|294138936|ref|YP_003554914.1| S1 RNA binding domain-containing protein [Shewanella violacea
           DSS12]
 gi|293325405|dbj|BAJ00136.1| S1 RNA binding domain protein [Shewanella violacea DSS12]
          Length = 780

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 + + I +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V 
Sbjct: 647 EQVKDLKPDMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFISDPHTIVKAGDVVK 706

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D +R +I L+M++ ++   KP
Sbjct: 707 VKVMEIDVERKRIALTMRLDEKAGDKP 733


>gi|254671507|emb|CBA09093.1| putative transcription accessory protein [Neisseria meningitidis
           alpha153]
          Length = 757

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|241758917|ref|ZP_04757029.1| protein tex [Neisseria flavescens SK114]
 gi|241320738|gb|EER56971.1| protein tex [Neisseria flavescens SK114]
          Length = 757

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|167758828|ref|ZP_02430955.1| hypothetical protein CLOSCI_01171 [Clostridium scindens ATCC 35704]
 gi|167663568|gb|EDS07698.1| hypothetical protein CLOSCI_01171 [Clostridium scindens ATCC 35704]
          Length = 227

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D      + S+     E  ++ +       +V  +  G+V  + ++GAFV       
Sbjct: 91  IDVDQANNRLVLSAREILKEKEKKAMEEKIANVKVGSVLTGKVESLQNYGAFVRLEDGLS 150

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GLVHISQ+S +RV    DV+ EG  V VK++   D GKI LSMK +++   +P+
Sbjct: 151 GLVHISQISQKRVKSPKDVLTEGQEVGVKIIGVKD-GKISLSMKALEEVQEEPV 203


>gi|167036685|ref|YP_001664263.1| hypothetical protein Teth39_0258 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115112|ref|YP_004185271.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855519|gb|ABY93927.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928203|gb|ADV78888.1| RNA binding S1 domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 140

 Score = 93.4 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  G+I LS+K       K 
Sbjct: 64  DANGRISLSIKKALPKNNKE 83


>gi|261391621|emb|CAX49059.1| putative RNA-binding protein [Neisseria meningitidis 8013]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|164687095|ref|ZP_02211123.1| hypothetical protein CLOBAR_00721 [Clostridium bartlettii DSM
           16795]
 gi|164603980|gb|EDQ97445.1| hypothetical protein CLOBAR_00721 [Clostridium bartlettii DSM
           16795]
          Length = 724

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            I   +I   + +G   +R I+ E      +  D+G   I  + + +IE  +E       
Sbjct: 601 KIGLKEISKQLEIGEPTLRDIILEIKKPGRDPRDEGMKPILRTDVLKIEDIKE------- 653

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 + KG V  V+DFGAFV      DGLVH SQ+S + V    ++V  GD + VK++
Sbjct: 654 ----GMVLKGTVRNVVDFGAFVDIGIKNDGLVHKSQMSNKFVKDPMEIVSVGDVIDVKVI 709

Query: 676 DFD-DRGKIKLSMK 688
             D D+G++ LSMK
Sbjct: 710 GIDLDKGRVSLSMK 723


>gi|121586614|ref|ZP_01676399.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121549173|gb|EAX59206.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|120596942|ref|YP_961516.1| RNA-binding S1 domain-containing protein [Shewanella sp. W3-18-1]
 gi|120557035|gb|ABM22962.1| RNA binding S1 domain protein [Shewanella sp. W3-18-1]
          Length = 813

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++ 
Sbjct: 682 KPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVMEV 741

Query: 678 D-DRGKIKLSMK---VVDQNTGK 696
           D +R +I LSM+    +DQN  +
Sbjct: 742 DVERRRIGLSMRLDEAIDQNNAQ 764


>gi|325135189|gb|EGC57814.1| S1 RNA binding domain protein [Neisseria meningitidis M13399]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|254805860|ref|YP_003084081.1| probable transcriptional accessory protein [Neisseria meningitidis
           alpha14]
 gi|254669402|emb|CBA08583.1| probable transcriptional accessory protein [Neisseria meningitidis
           alpha14]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|225375199|ref|ZP_03752420.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM
           16841]
 gi|225212950|gb|EEG95304.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM
           16841]
          Length = 748

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
           D++   +G+G   ++ IV++             K A     ++                 
Sbjct: 629 DKLAEELGIGAITLQDIVKELE-----------KPARDPREDMPKPILRSDVLEMKDLTP 677

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + KG V  V+DFGAFV     +DGLVHISQ+S + +    +VV  GD V VK++  D 
Sbjct: 678 GMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEVVSVGDIVEVKVMSVDL 737

Query: 679 DRGKIKLSMK 688
            + +I+L+MK
Sbjct: 738 KKQRIQLTMK 747


>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
          Length = 495

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I +Q  AK+   D     +  S  A +E  +  +R       +  ++  G V  +++FG
Sbjct: 167 YIGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFG 226

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +    +VV  GD V V++LD D DR ++ LS+K   ++
Sbjct: 227 AFVDL-GGVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQED 285

Query: 694 TGK 696
             +
Sbjct: 286 PWQ 288



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIE-------AAREMIRSITDVPEVNKIYKGQVVKV 630
           ++  G  V + D+ TV++    +              +  +       + +I  G+V K+
Sbjct: 248 IDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHVIGQIVPGKVTKL 307

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           + FGAFV      +GLVHIS+L+   V     VV   +T++VK++D D +R +I LS+K 
Sbjct: 308 VPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQ 367

Query: 690 VDQ 692
            ++
Sbjct: 368 ANE 370



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      V      +G+V   +LS +      +VV+ GD +   +L   D 
Sbjct: 40  DIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSIKHDVDPGEVVEVGDEIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLMLSKKRAQ 111


>gi|325203201|gb|ADY98654.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240355]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|323497028|ref|ZP_08102051.1| transcription accessory protein [Vibrio sinaloensis DSM 21326]
 gi|323317872|gb|EGA70860.1| transcription accessory protein [Vibrio sinaloensis DSM 21326]
          Length = 775

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   + +G V  V +FGAFV     +DGLVHIS L+ + V+   +VVK GD V 
Sbjct: 643 NSVSDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKYVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 703 VKVMEVDVQRKRIGLSMR-LNDEPGQD 728


>gi|304388872|ref|ZP_07370922.1| YhgF like protein [Neisseria meningitidis ATCC 13091]
 gi|304337165|gb|EFM03349.1| YhgF like protein [Neisseria meningitidis ATCC 13091]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|297521212|ref|ZP_06939598.1| putative transcriptional accessory protein [Escherichia coli OP50]
          Length = 436

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A         +  +   I +G V  V +FGAFV     +DG
Sbjct: 280 DIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDG 339

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +D   G+
Sbjct: 340 LVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDVQPGE 390


>gi|258624644|ref|ZP_05719580.1| RNA-binding protein [Vibrio mimicus VM603]
 gi|258583108|gb|EEW07921.1| RNA-binding protein [Vibrio mimicus VM603]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|15676011|ref|NP_273139.1| putative transcriptional accessory protein Tex [Neisseria
           meningitidis MC58]
 gi|9978037|sp|Q51152|YHGF_NEIMB RecName: Full=Uncharacterized protein NMB0075
 gi|7225295|gb|AAF40542.1| putative transcriptional accessory protein Tex [Neisseria
           meningitidis MC58]
 gi|316985915|gb|EFV64854.1| protein yhgF [Neisseria meningitidis H44/76]
 gi|325141225|gb|EGC63724.1| S1 RNA binding domain protein [Neisseria meningitidis CU385]
 gi|325199301|gb|ADY94756.1| S1 RNA binding domain protein [Neisseria meningitidis H44/76]
 gi|325205168|gb|ADZ00621.1| S1 RNA binding domain protein [Neisseria meningitidis M04-240196]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|218767225|ref|YP_002341737.1| putative transcriptional accessory protein [Neisseria meningitidis
           Z2491]
 gi|9979534|sp|P57072|YHGF_NEIMA RecName: Full=Uncharacterized protein NMA0194
 gi|121051233|emb|CAM07508.1| putative transcriptional accessory protein [Neisseria meningitidis
           Z2491]
 gi|302028148|gb|ADK90962.1| unknown [Neisseria meningitidis]
 gi|319411440|emb|CBY91852.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|261211279|ref|ZP_05925568.1| transcription accessory protein [Vibrio sp. RC341]
 gi|260839780|gb|EEX66391.1| transcription accessory protein [Vibrio sp. RC341]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|289579282|ref|YP_003477909.1| RNA binding S1 domain protein [Thermoanaerobacter italicus Ab9]
 gi|297545433|ref|YP_003677735.1| RNA binding S1 domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|289528995|gb|ADD03347.1| RNA binding S1 domain protein [Thermoanaerobacter italicus Ab9]
 gi|296843208|gb|ADH61724.1| RNA binding S1 domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 140

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  G+I LS+K       K 
Sbjct: 64  DSSGRISLSIKKALPKNNKE 83


>gi|254225439|ref|ZP_04919050.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125622073|gb|EAZ50396.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|313667392|ref|YP_004047676.1| RNA-associated protein [Neisseria lactamica ST-640]
 gi|313004854|emb|CBN86280.1| putative RNA-associated protein [Neisseria lactamica 020-06]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|153802184|ref|ZP_01956770.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|254285911|ref|ZP_04960873.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262190725|ref|ZP_06048955.1| transcription accessory protein [Vibrio cholerae CT 5369-93]
 gi|124122258|gb|EAY41001.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|150424093|gb|EDN16032.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262033402|gb|EEY51910.1| transcription accessory protein [Vibrio cholerae CT 5369-93]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|325145402|gb|EGC67678.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
 gi|325145448|gb|EGC67723.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|317121948|ref|YP_004101951.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591928|gb|ADU51224.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
          Length = 598

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +  D +    I S      E AR          E  ++  G V  + DFGAF+   G  D
Sbjct: 347 IEFDRNKRRVILSRKELLEEEARRRAEETLASLEEGQVRTGVVKGLTDFGAFIDL-GGVD 405

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GL+H+S++   R+    D++KEGDT+ VK+L  D +RG+I LS+K +  +    
Sbjct: 406 GLLHVSEMHWGRIDHPRDLLKEGDTIQVKVLRVDRERGRISLSLKELMPDPWAD 459



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    +I+ S    +    +          V    KG VV+++ FGAFV      +GLVH
Sbjct: 439 DRERGRISLSLKELMP---DPWADAEQRYPVGATVKGTVVRLVPFGAFVRLEPGVEGLVH 495

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           ISQL+  RV    +VV+EG  V V++L    +  +I LSM
Sbjct: 496 ISQLADHRVESPDEVVQEGQQVEVRVLRVQPEDRRISLSM 535


>gi|309378562|emb|CBX22834.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|262402002|ref|ZP_06078567.1| transcription accessory protein [Vibrio sp. RC586]
 gi|262351974|gb|EEZ01105.1| transcription accessory protein [Vibrio sp. RC586]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|262170352|ref|ZP_06038030.1| transcription accessory protein [Vibrio mimicus MB-451]
 gi|261891428|gb|EEY37414.1| transcription accessory protein [Vibrio mimicus MB-451]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|229524694|ref|ZP_04414099.1| transcription accessory protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229338275|gb|EEO03292.1| transcription accessory protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|153825500|ref|ZP_01978167.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149740785|gb|EDM54876.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|15642710|ref|NP_232343.1| hypothetical protein VC2716 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121726718|ref|ZP_01679943.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674924|ref|YP_001218204.1| hypothetical protein VC0395_A2288 [Vibrio cholerae O395]
 gi|153817458|ref|ZP_01970125.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821294|ref|ZP_01973961.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082830|ref|YP_002811381.1| hypothetical protein VCM66_2636 [Vibrio cholerae M66-2]
 gi|229507236|ref|ZP_04396741.1| transcription accessory protein [Vibrio cholerae BX 330286]
 gi|229509843|ref|ZP_04399324.1| transcription accessory protein [Vibrio cholerae B33]
 gi|229606742|ref|YP_002877390.1| transcription accessory protein [Vibrio cholerae MJ-1236]
 gi|254851253|ref|ZP_05240603.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744326|ref|ZP_05418278.1| transcription accessory protein [Vibrio cholera CIRS 101]
 gi|262158564|ref|ZP_06029679.1| transcription accessory protein [Vibrio cholerae INDRE 91/1]
 gi|262170042|ref|ZP_06037731.1| transcription accessory protein [Vibrio cholerae RC27]
 gi|298500469|ref|ZP_07010273.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657313|gb|AAF95856.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630879|gb|EAX63261.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126512044|gb|EAZ74638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521226|gb|EAZ78449.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146316807|gb|ABQ21346.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227010718|gb|ACP06930.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227014602|gb|ACP10812.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229353317|gb|EEO18256.1| transcription accessory protein [Vibrio cholerae B33]
 gi|229354741|gb|EEO19662.1| transcription accessory protein [Vibrio cholerae BX 330286]
 gi|229369397|gb|ACQ59820.1| transcription accessory protein [Vibrio cholerae MJ-1236]
 gi|254846958|gb|EET25372.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737851|gb|EET93244.1| transcription accessory protein [Vibrio cholera CIRS 101]
 gi|262021450|gb|EEY40162.1| transcription accessory protein [Vibrio cholerae RC27]
 gi|262029725|gb|EEY48374.1| transcription accessory protein [Vibrio cholerae INDRE 91/1]
 gi|297540638|gb|EFH76695.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|254673894|emb|CBA09677.1| putative transcription accessory protein [Neisseria meningitidis
           alpha275]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEIGDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|198283153|ref|YP_002219474.1| 30S ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667071|ref|YP_002425381.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247674|gb|ACH83267.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519284|gb|ACK79870.1| ribosomal protein S1 [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 568

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+V  + GK +   + +   K N      V ++  ++ E E + E    +  + 
Sbjct: 145 VDVRPVRDVAYLEGKDLEMKIIKLDRKRN-----NVVVSRRAVVEQEQSVERGALLESIQ 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  + D+GAF+   G  DGL+HI+ +   RV   S+VV  G  V V +L F
Sbjct: 200 EGA-VLEGVVKNLTDYGAFIDL-GGIDGLLHITDMGWRRVKHPSEVVTVGGEVRVLVLKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +RG+I L MK + ++  + I 
Sbjct: 258 DRERGRISLGMKQLGEDPWRDIA 280



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  +I+ G+V  V D+GAFV      +GLVH+S++    +    +  +  G  V V +L
Sbjct: 284 PEATRIF-GKVTNVTDYGAFVEIEEGVEGLVHVSEIDWTNKNINPAKALHVGQEVEVMIL 342

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           D D +R +I L +K    N    
Sbjct: 343 DIDEERRRISLGIKQCLPNPWDD 365



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++                           +      GQ+  + DFG FV   G  D
Sbjct: 342 LDIDEERRRISLGIKQCLPN----PWDDFAQNFQKGDRVSGQIKSITDFGVFVGLDGGID 397

Query: 645 GLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GL+H+S L+ +R       D  K+GDT+   +L  D +R +I L +K ++ + 
Sbjct: 398 GLIHLSDLAWDRTGEEAVRD-FKKGDTLDAVVLSIDPERERISLGVKQMETDP 449



 Score = 38.4 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         E   + +G+V+ V   GA +      +G +   +L+          +  G
Sbjct: 448 DPFIQFVVANEKGALVEGEVISVDSRGAEIRLGEGVEGFLPHRELARG------VTLSAG 501

Query: 668 DTVWVKLLDFDDRGK-IKLSMKV 689
           D + V +   D + + + LS K 
Sbjct: 502 DKIEVSIAMVDRKNRTLTLSTKA 524


>gi|308388296|gb|ADO30616.1| putative transcriptional accessory protein [Neisseria meningitidis
           alpha710]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|229513644|ref|ZP_04403108.1| transcription accessory protein [Vibrio cholerae TMA 21]
 gi|229349521|gb|EEO14477.1| transcription accessory protein [Vibrio cholerae TMA 21]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|229516964|ref|ZP_04406410.1| transcription accessory protein [Vibrio cholerae RC9]
 gi|229346027|gb|EEO10999.1| transcription accessory protein [Vibrio cholerae RC9]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|161869094|ref|YP_001598260.1| transcriptional accessory protein Tex, putative [Neisseria
           meningitidis 053442]
 gi|161594647|gb|ABX72307.1| transcriptional accessory protein Tex, putative [Neisseria
           meningitidis 053442]
          Length = 758

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 606 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 665

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 666 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 717


>gi|153828359|ref|ZP_01981026.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876189|gb|EDL74324.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|297581556|ref|ZP_06943479.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534394|gb|EFH73232.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 773

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            EV  + +G V  V +FGAFV     +DG
Sbjct: 617 DIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS L+   ++   +VVK GD V VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 677 LVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR-LNDEPGQD 728


>gi|260774748|ref|ZP_05883651.1| transcription accessory protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609310|gb|EEX35462.1| transcription accessory protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 775

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NEVSDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 703 VKVMEVDIQRKRIGLSMR-LNDEPGQD 728


>gi|163867382|ref|YP_001608576.1| 30S ribosomal protein S1 [Bartonella tribocorum CIP 105476]
 gi|161017023|emb|CAK00581.1| 30S ribosomal protein S1 [Bartonella tribocorum CIP 105476]
          Length = 566

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E     +  R++   F+       +  D     +      IR I +
Sbjct: 91  SREKARREESWVRLEEK-FNAGVRVEGVIFSQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QT-------GAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            +         ++   D     I  S    +E +R   RS      E N+I +G V  + 
Sbjct: 150 VSPLMHNSQSFEILKMDRRRGNIVVSRRTVLEESRAEQRSEIVQNLEENQIVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+V+  G T+ V+++  + D  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEVLTIGQTIKVQIIRINQDTHRISLGMKQL 268

Query: 691 DQNTGKPI 698
           + +  + I
Sbjct: 269 ESDPWESI 276



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI+    + K   G V  + D+G FV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWESISVRYPIGKKITGAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVEVVVLEIDPSKRRISLGLKQTFENPWE 361



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S +  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEVLTIGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLESDPWESISVRYPIGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     +  +      +                       +  +   VN  
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVEVVVLEIDPSKRRISLGLKQTFENPWEAFANKFPVNSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  D   +GD V   +LD D ++
Sbjct: 373 IEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDIVKAVVLDVDIEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +VV V D    V       +  +  + L+ +R  +  +    G  V  ++  FD +
Sbjct: 461 VVTCEVVAVNDNDINVKLIDHNLETTIRRTDLARDRDEQRPERFAIGQKVDARITAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + I +S+K ++    K  V
Sbjct: 521 TRKISVSIKALEIAEEKEAV 540


>gi|153814341|ref|ZP_01967009.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756]
 gi|317500055|ref|ZP_07958290.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087715|ref|ZP_08336641.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848737|gb|EDK25655.1| hypothetical protein RUMTOR_00551 [Ruminococcus torques ATCC 27756]
 gi|316898540|gb|EFV20576.1| ribosomal protein S1 [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409696|gb|EGG89132.1| hypothetical protein HMPREF1025_00224 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ D      + S+     E  ++         ++ ++ +G V  + ++GAF+       
Sbjct: 103 IDADQANNRLVLSARELLKEKEKKAREDQIANLKIGEVLEGTVETLQNYGAFIKLDNGLS 162

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           GLVH+SQ+S +RV   SDV+  GD V VK++   D GKI LSMK +++   +P
Sbjct: 163 GLVHVSQISQKRVKLPSDVLNAGDKVTVKVIGIKD-GKISLSMKALEEVKEEP 214


>gi|119897363|ref|YP_932576.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
 gi|119669776|emb|CAL93689.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
          Length = 568

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
              H+  +      G T +  D      + N +  AL +    +  I   +   L+    
Sbjct: 74  DFIHVAIEALEDGYGETRLSRDKAKRIAAWNDLEKALNEGTLVKGVISGRVKGGLTVMTN 133

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK     V +   K N   +  V   +     + 
Sbjct: 134 SIRAFLPGSLVDMRP---VKDTSPYEGKEYEFKVIKLDRKRN---NVVVSRRAVLEESMG 187

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             R+ +       +   + KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 188 EERQKLLEN---LKEGTVVKGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVL 243

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GD +  K+L FD ++ ++ L +K + ++  
Sbjct: 244 NVGDEIEAKVLKFDQEKNRVSLGLKQLGEDPW 275



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VV+ GD V V +L+ D DR +
Sbjct: 290 GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRR 349

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 350 ISLGMKQCASNPWDD 364



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P +   V+ +G +V   I+E       ID+D               A           
Sbjct: 324 IHPTK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQC----ASNPWDDFAINH 369

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           +     +GQ+  + DFG F+   G  DGLVH+S LS        D V   K+GD V   +
Sbjct: 370 KKGDKVRGQIKSITDFGVFIGLDGGIDGLVHLSDLSWS--ESGEDAVRKFKKGDEVEAVV 427

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 428 LAIDVERERISLGIKQLEGDP 448



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     E N + +G V  V   GA +      +G +  S+ +  RV   + ++KEG
Sbjct: 447 DPFTNFIATHEKNSLVRGTVKSVDARGAVIGLGDEVEGYLRASEAAPHRVDDLTTMLKEG 506

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D + + +++ D + + I LS++  DQ
Sbjct: 507 DELELMIINVDRKTRSINLSIRAKDQ 532


>gi|59802211|ref|YP_208923.1| hypothetical protein NGO1895 [Neisseria gonorrhoeae FA 1090]
 gi|240015149|ref|ZP_04722062.1| hypothetical protein NgonD_11018 [Neisseria gonorrhoeae DGI18]
 gi|240017597|ref|ZP_04724137.1| hypothetical protein NgonFA_10626 [Neisseria gonorrhoeae FA6140]
 gi|240081741|ref|ZP_04726284.1| hypothetical protein NgonF_10618 [Neisseria gonorrhoeae FA19]
 gi|240114017|ref|ZP_04728507.1| hypothetical protein NgonM_10706 [Neisseria gonorrhoeae MS11]
 gi|240122220|ref|ZP_04735182.1| hypothetical protein NgonPI_10740 [Neisseria gonorrhoeae PID24-1]
 gi|240124510|ref|ZP_04737466.1| hypothetical protein NgonP_11353 [Neisseria gonorrhoeae PID332]
 gi|254494775|ref|ZP_05107946.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291]
 gi|268597839|ref|ZP_06132006.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268600083|ref|ZP_06134250.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11]
 gi|268683144|ref|ZP_06150006.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332]
 gi|293398254|ref|ZP_06642459.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62]
 gi|59719106|gb|AAW90511.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|226513815|gb|EEH63160.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291]
 gi|268551627|gb|EEZ46646.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268584214|gb|EEZ48890.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11]
 gi|268623428|gb|EEZ55828.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332]
 gi|291611517|gb|EFF40587.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|325131120|gb|EGC53841.1| S1 RNA binding domain protein [Neisseria meningitidis OX99.30304]
 gi|325137143|gb|EGC59738.1| S1 RNA binding domain protein [Neisseria meningitidis M0579]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|121633956|ref|YP_974201.1| putative transcriptional accessory protein [Neisseria meningitidis
           FAM18]
 gi|120865662|emb|CAM09383.1| putative transcriptional accessory protein [Neisseria meningitidis
           FAM18]
          Length = 758

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 606 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 665

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 666 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 717


>gi|50123042|ref|YP_052209.1| putative RNA binding protein [Pectobacterium atrosepticum SCRI1043]
 gi|49613568|emb|CAG77019.1| putative RNA binding protein [Pectobacterium atrosepticum SCRI1043]
          Length = 777

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+   V     VVK GD V VK+++ D  
Sbjct: 651 MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQ 710

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 711 RKRIALTMR-LDEQPG 725


>gi|116626034|ref|YP_828190.1| RNA-binding S1 domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229196|gb|ABJ87905.1| RNA binding S1 domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 749

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
               RE +R I D+     + +G V  V  FGAF+      DGLVH+SQL+   V   S+
Sbjct: 627 APKWREDVREIADLQPGMTL-EGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASE 685

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           VVK G  V V+++  D +  +I LSMK +D    +P
Sbjct: 686 VVKAGQIVKVQVISADPKTKRIALSMKALDAAPPEP 721


>gi|330806957|ref|YP_004351419.1| S1 RNA-binding domain protiein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375065|gb|AEA66415.1| Conserved hypothetical protein; putative S1 RNA-binding domain
           protiein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 774

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG  G + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAQTDRDIRSLIGDAGFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 599 --DPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|282889765|ref|ZP_06298304.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's
           coccus]
 gi|281500339|gb|EFB42619.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's
           coccus]
          Length = 572

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+       I    E    K+NI+    V      L     +++    + + 
Sbjct: 142 QIDNKRIKNL----DDYIDKTYEFKILKINIERKNVVVSRRELLEAERVSKKA--EVLER 195

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I +G V  + DFG F+      DGL+HI+ ++ +R+   S++V+ GD + VK+L 
Sbjct: 196 IQEGDIREGTVKNITDFGVFLDL-DGIDGLLHITDMTWKRIKHPSEMVQLGDKLKVKILS 254

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N    I
Sbjct: 255 IDKEKGRVALGLKQKEPNPWDQI 277



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 15/209 (7%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + ++ K   +S   ++ A + +K+  +    +   +   +   + +F      + +
Sbjct: 162 KILKINIERKNVVVSRRELLEAERVSKKAEVLERIQEGDIREGTVKNITDF-----GVFL 216

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIR 611
             D I  ++ +     + I +     V + D   VKI S    +   A            
Sbjct: 217 DLDGIDGLLHITDMTWKRI-KHPSEMVQLGDKLKVKILSIDKEKGRVALGLKQKEPNPWD 275

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTV 670
            I          KG++V ++ +GAF+      +GL+H+S++S  + V   SDVVK+GD V
Sbjct: 276 QIEQKYPPGTRVKGKIVNLLPYGAFIEIEPGIEGLIHVSEMSWVKNVTDPSDVVKKGDEV 335

Query: 671 WVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
              +L    D GKI L +K  + N    +
Sbjct: 336 EAIVLSVQKDEGKISLGIKQTEHNPWDDV 364



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              SI     V  + KG V K+  FGAFV      +GL+H+++LS +   K  DVV +GD
Sbjct: 447 PWESIEKTMPVGTLVKGVVSKITAFGAFVELESGIEGLIHVTELSDKAFGKVEDVVAKGD 506

Query: 669 TVWVKLLDFDDR-GKIKLSMKV--VDQN 693
            V  K++  D    KI LS+K   +DQN
Sbjct: 507 EVIAKVIKLDPEYKKIALSIKEYLIDQN 534



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 106/261 (40%), Gaps = 34/261 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G VK+  DF +  D+ G +   H+  M +K     S +  +   +K+  +S +    
Sbjct: 201 IREGTVKNITDFGVFLDLDGIDGLLHITDMTWKRIKHPSEMVQLGDKLKVKILSID---- 256

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTP-----RVEIMAIPPDQIRNVIGMGGKVI 574
                 + +  +   + +       Q+ +  P     + +I+ + P      I  G + +
Sbjct: 257 ------KEKGRVALGLKQKEPNPWDQIEQKYPPGTRVKGKIVNLLPYGAFIEIEPGIEGL 310

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEV 619
             + E +  K   D    VK      A + + ++                   + +  +V
Sbjct: 311 IHVSEMSWVKNVTDPSDVVKKGDEVEAIVLSVQKDEGKISLGIKQTEHNPWDDVQNKYQV 370

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
               K ++  + ++GAFV      +GL+HIS LS  ++V+  S+V+++GD V   +L  D
Sbjct: 371 GTNVKAEIKSLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEVLRKGDVVDAVILSVD 430

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            D  KI L +K +  N  + I
Sbjct: 431 KDSKKITLGVKQLSDNPWESI 451



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD+G + ++      +         I    E   I KG+V++ +  G  V      +  +
Sbjct: 85  DDNGQIVLSREKAERLRQ----WEYILQHCEEGSIVKGRVLRKVKGGLMVDI--GMEAFL 138

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +R+    D + +  T   K+L  + +R  + +S + + +
Sbjct: 139 PGSQIDNKRIKNLDDYIDK--TYEFKILKINIERKNVVVSRRELLE 182


>gi|269926456|ref|YP_003323079.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 431

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++      I S  +A  E        + +     +I KG+V  + DFGAFV   GA D
Sbjct: 225 IEVNRKRNRLILSERIATQERKETSKERLIEELREGQIVKGRVTSLADFGAFVDIGGA-D 283

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  R+   S+V+K GD V V +L+ D +  KI LSMK       
Sbjct: 284 GLIHLSEISWGRINHPSEVLKPGDEVDVMVLNIDREHKKIALSMKRTQPEPW 335



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   +  +  +V +I +G+V ++  FG FV      +GLVH+S+L   +V       + G
Sbjct: 333 EPWATAMERYDVGQIVEGEVTQIAPFGVFVRLEDGIEGLVHMSELGDTKV-------QVG 385

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D + ++++  D  R +I LS++ +D+ 
Sbjct: 386 DKLRLRVIKMDTQRRRIGLSVRQLDEP 412


>gi|327460308|gb|EGF06645.1| 30S ribosomal protein S1 [Streptococcus sanguinis SK1057]
          Length = 400

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVHISQ+S +RV    D +K G 
Sbjct: 268 PWDGVEQKLAAGDLIEGTVKRLTDFGAFVEVLPGIDGLVHISQISHKRVESPKDALKVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L+ +    ++ LS+K +++   + 
Sbjct: 328 EVTVKVLEVNAADERVSLSIKALEERPAQE 357


>gi|325201262|gb|ADY96716.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240149]
 gi|325207121|gb|ADZ02573.1| S1 RNA binding domain protein [Neisseria meningitidis NZ-05/33]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|92115795|ref|YP_575524.1| 30S ribosomal protein S1 [Nitrobacter hamburgensis X14]
 gi|91798689|gb|ABE61064.1| SSU ribosomal protein S1P [Nitrobacter hamburgensis X14]
          Length = 566

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 16/250 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKI 509
           I K +A I +GL  +G   +      G E+ L   D      D      G   +  D   
Sbjct: 40  IEKDMAVIDVGLKTEGRVALREFAGPGRENSLKVGDEVEVFLDRIENALGEAVLSRDKAR 99

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              S   +  A Q  ++    I N++    +        F PR     +    IR+V   
Sbjct: 100 REESWGKLEKAFQNNEKVHGVIFNQVKGGFTVDLDGAVAFLPRS---QVDIRPIRDV--- 153

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            G ++         K++      V    + L E  A  E  + +    E  ++  G V  
Sbjct: 154 -GPLMNNTQPFQILKMDRRRGNIVVSRRTVLEETRA--EQRQELVQNLEEGQVIDGVVKN 210

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  + +  +I L MK
Sbjct: 211 ITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLAIGQTVKVKIIKINHETHRISLGMK 269

Query: 689 VVDQNTGKPI 698
            +  +  + I
Sbjct: 270 QLLDDPWQGI 279



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  Y G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLNARYTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
              V V++L+ D  + +I L +K   +N  +  V
Sbjct: 334 SQEVEVQVLEVDAVKRRISLGLKQTMRNPWEAFV 367



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R    +  +   V    +G+V    +FG F+   G  DG+VH+S L  ++   +  D  K
Sbjct: 360 RNPWEAFVEKHPVGSTVEGEVKNKTEFGLFLGLEGDVDGMVHLSDLDWKQPGEQVIDNFK 419

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            GD V   +LD D ++ +I L +K ++ + 
Sbjct: 420 RGDMVKAIVLDVDVEKERISLGVKQLEGDP 449



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+++ D G  V   G      +  S+L+ +R  + S+    G+ V  +++ FD +
Sbjct: 461 VVTCEVLEIKDGGIEVQIAGTEFQTFIKRSELARDRNDQRSERFAVGEKVDARVIQFDRK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 521 ARKVQVSIKALEVAEEKEAI 540


>gi|320107286|ref|YP_004182876.1| Tex-like protein [Terriglobus saanensis SP1PR4]
 gi|319925807|gb|ADV82882.1| Tex-like protein [Terriglobus saanensis SP1PR4]
          Length = 750

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   + +G V  V  FGAF+     +DGLVHIS++S   +   S+V+K G  V  K+L 
Sbjct: 642 VQPGMVLEGVVTNVTKFGAFIDVGVHQDGLVHISEISNRFIKDPSEVLKAGQIVKAKVLS 701

Query: 677 FDDR-GKIKLSMKVVDQNTGK 696
            D +  +I LS+K + +  G+
Sbjct: 702 ADSKTKRISLSIKALREPAGR 722


>gi|116621034|ref|YP_823190.1| 30S ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224196|gb|ABJ82905.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 572

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 14/180 (7%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQ---LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           AL++A   +  IL  ++ V+         +  F P     A    ++  ++G        
Sbjct: 120 ALEKAFAEKAAILGTITAVVKGGVSVDVGVRAFMPASRSGARDAAEMEKLVGQE------ 173

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +     K+++ D+  V    + L E E A +  R      +  +I  G +  + D+GAF
Sbjct: 174 -IRCRIIKLDVADEDLVVDRRAVLEEEERASKEQRYS--QVKEGEIVHGTIRSLTDYGAF 230

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           V   G  D L+H++ +S  RV K +DV+  GD V  K+L  D  + +I L +K +  +  
Sbjct: 231 VDI-GGVDALLHVADISWGRVNKPADVLNVGDKVEAKILKVDPAKKRISLGLKQLQPHPW 289



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
                + D  +V +   G V +V DFGAFV      +GLVH+S++S  +++ + +D+VK 
Sbjct: 287 HPWDLVADKYKVGERVTGSVTRVTDFGAFVELEKGIEGLVHLSEMSWSKKIRRPADMVKP 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L  +    +I L +K    +    
Sbjct: 347 GDQVEVVVLGVNAADRRISLGLKQALGDPWAD 378



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKE 666
           +          V  + +G V  +  FGAFV      +G+VH+  +S  +R+    DVVK 
Sbjct: 374 DPWADAAQKLAVGTVIEGPVTSIQKFGAFVQVAEGVEGMVHVGDISAEKRINHPQDVVKV 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVV 690
           G  V  ++L+ D ++ +++L MK +
Sbjct: 434 GQVVKAQVLELDVEKRRLRLGMKQL 458



 Score = 37.6 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            +G VV +    A +      +G++ ++         T D VK GD + V +   D  G 
Sbjct: 50  LEGTVVAITAEAALLDIGFKTEGIIPLTDFQ-----STGDTVKVGDKLPVSIKGRDPEGY 104

Query: 683 IKLSMKVVD 691
            +LS   V+
Sbjct: 105 YELSRLKVE 113


>gi|325110553|ref|YP_004271621.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324970821|gb|ADY61599.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 556

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            + T   ++++      + S      E              V     G V  + D+GAFV
Sbjct: 304 QKLTARVIDVNPKKRNLVVSRKALLQEERAAAEAEAWQELAVGDQRTGTVKTIKDYGAFV 363

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  DGL+H+ +LS  RV   SDV++EG  V VK+L  D ++ KI L MK +  N  
Sbjct: 364 DI-GGVDGLLHVRELSWTRVNHPSDVLQEGQQVEVKVLSIDQEKKKISLGMKQLMTNPW 421



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                      N +  G V K  DFGAFV      +GL+HIS+L   RV +  DV+ EG 
Sbjct: 420 PWDYAEQRYPKNTVVTGLVKKTTDFGAFVEIEPGLEGLIHISELDFRRVNRVEDVLTEGQ 479

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
               ++L+ + ++ +I LS+K +    
Sbjct: 480 ETEAQVLEINKNKKRISLSLKSIKPKP 506


>gi|240124617|ref|ZP_04737503.1| hypothetical protein NgonSK_00055 [Neisseria gonorrhoeae SK-92-679]
 gi|240129190|ref|ZP_04741851.1| hypothetical protein NgonS_11312 [Neisseria gonorrhoeae SK-93-1035]
 gi|268683184|ref|ZP_06150046.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687573|ref|ZP_06154435.1| transcriptional accessory protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268623468|gb|EEZ55868.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627857|gb|EEZ60257.1| transcriptional accessory protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 757

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
          Length = 204

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 6/210 (2%)

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
            G+T+ + VV  G R+            +          P    E   +   SR    + 
Sbjct: 1   MGNTKVLAVV-YGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMNSRICTEYA 59

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
           +  RR    V+  T     T+ I   I ++DG      +  + LA++DAG+ I      +
Sbjct: 60  QAIRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQVSL 119

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            +G + +     IL D++  E HL  +   VA          +      I   +    L 
Sbjct: 120 NVGYMDNT----ILFDMNYVESHLNGILLTVAYLPKS-DQFTLTTLNSNIPLELFEDVLD 174

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
            AK G   +   +   + E+  +L + T +
Sbjct: 175 AAKEGCKQVYAILKDHVLENAKKLYQSTQQ 204



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 17/204 (8%)

Query: 35  YGETVVLATVVYDRSLKDGQ------DFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88
            G T VLA V   R            D   ++       Y      G   R     +   
Sbjct: 1   MGNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYC-----GTERRVVHMNSRIC 55

Query: 89  ILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
              ++ I R    +        +   +   + Q D    P  +   AA  A++ +G+   
Sbjct: 56  TEYAQAIRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCL--NAALLAIIDAGIDIL 113

Query: 147 GPVVGAQVDYINGQYVLNPRLDE--DQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAI 204
              V   V Y++   + +    E    G L       +     +    + +  ++  D +
Sbjct: 114 DFQVSLNVGYMDNTILFDMNYVESHLNGILLTVAYLPKSDQFTLTTLNSNIPLELFEDVL 173

Query: 205 IFGHNECKPVIEAISKLAKMCAKE 228
                 CK V   +       AK+
Sbjct: 174 DAAKEGCKQVYAILKDHVLENAKK 197


>gi|297538802|ref|YP_003674571.1| 30S ribosomal protein S1 [Methylotenera sp. 301]
 gi|297258149|gb|ADI29994.1| ribosomal protein S1 [Methylotenera sp. 301]
          Length = 503

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 17/227 (7%)

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+ +E      + +V   D     + ++    G    ++     + K  R+    ++   
Sbjct: 58  IAAEEFKNAQGEIEVQVGD--FVKVLIEKLEDGFGSTLL----SREKAKRMETWLDLEDA 111

Query: 539 LSESRLQLGEFTPRVE---------IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           ++E R+  G  + +V+         IMA  P  + +V  +         E     + ID 
Sbjct: 112 MNEGRIIKGFVSGKVKGGLRVSVNGIMAFLPGSLVDVRPVKDTTPFENKECDLKVIKIDR 171

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
                + S       +A     ++        + KG V  + D+GAFV   G  DGL+HI
Sbjct: 172 KRNNIVVSRRAVMEVSAGADRDALMGTLAEGAVVKGIVKNITDYGAFVDL-GGIDGLLHI 230

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + L+  RV   S+V+  G+ V  K+L FD ++ ++ L +K +  +  
Sbjct: 231 TDLAWRRVKHPSEVLTVGEEVEAKILKFDQEKNRVSLGIKQLGDDPW 277



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++T    V+    G+V  + D+GAFV      +GLVH+S++    +      + + 
Sbjct: 275 DPWVALTRRYPVSTRLFGKVSNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNIHPGKIAQL 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R ++ L MK    N    
Sbjct: 335 GDEVEVMILEIDEARRRLSLGMKQCKANPWDD 366



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 36/259 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            +  G+VK+  D+    D+ G +   H+  + ++     S +  +  +++       I+ 
Sbjct: 203 AVVKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLTVGEEVEA-----KILK 257

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + L    P    +      + +      I  G + 
Sbjct: 258 FDQEKNRVSL-----GIKQLGDDPWVALTRRYPVSTRLFGKVSNLTDYGAFVEIEPGIEG 312

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLA----EIEAAREM------------IRSITDVP 617
           +  + E      NI   G +      +     EI+ AR                  +   
Sbjct: 313 LVHVSEMDWTNKNIHP-GKIAQLGDEVEVMILEIDEARRRLSLGMKQCKANPWDDFSATH 371

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
                  GQ+  + DFG F+   G  DGLVH+S LS  +   +     K+GD +   +L 
Sbjct: 372 HKGDNVSGQIKSITDFGVFIGLPGGIDGLVHLSDLSWSQTGEEAIRNFKKGDELQAVILA 431

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D ++ +I L +K +  + 
Sbjct: 432 IDVEKERISLGVKQLSADP 450


>gi|256394808|ref|YP_003116372.1| 30S ribosomal protein S1 [Catenulispora acidiphila DSM 44928]
 gi|256361034|gb|ACU74531.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928]
          Length = 493

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  ++      + ++  G
Sbjct: 247 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATME-----DPWQTFARTHAIGQVVPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV  GD ++VK++D D DR +I 
Sbjct: 302 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPEQVVNVGDEIFVKVIDIDLDRRRIS 361

Query: 685 LSMKVVDQNTGKPI 698
           LS+K  ++     I
Sbjct: 362 LSLKQANEGLTGDI 375



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  + E+ ++     +  ++  G V  +++FGAFV
Sbjct: 169 KELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLTTLQKGQVRSGVVSSIVNFGAFV 228

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 229 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATMEDPWQ 287



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD +   +L   D 
Sbjct: 39  DIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDHIEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLILSKKRAQ 110


>gi|254245991|ref|ZP_04939312.1| Ribosomal protein S1 [Burkholderia cenocepacia PC184]
 gi|124870767|gb|EAY62483.1| Ribosomal protein S1 [Burkholderia cenocepacia PC184]
          Length = 596

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 133 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 189

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I  G V  + D+GAF
Sbjct: 190 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVNGVVKNITDYGAF 243

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 244 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 302

Query: 696 KPI 698
           + I
Sbjct: 303 EGI 305



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 300 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 359

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 360 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 391



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 474 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEG 533

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 534 DKVNAMVINIDRKSRGINLSIKAKD 558



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 368 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 423

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 424 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 475


>gi|113867443|ref|YP_725932.1| transcriptional accessory protein [Ralstonia eutropha H16]
 gi|113526219|emb|CAJ92564.1| transcriptional accessory protein [Ralstonia eutropha H16]
          Length = 784

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   + +G V  V  FGAFV     +DG
Sbjct: 629 DILSELEKPGRDPRPEFKTATFQEGVEDVKDLQPGMVLEGVVTNVAAFGAFVDIGVHQDG 688

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVHIS LS++ V    +VVK G  V VK+++ D  R +I LSM++ D+ 
Sbjct: 689 LVHISALSSKFVKDAHEVVKAGQIVKVKVMEVDVKRNRIGLSMRLDDEP 737


>gi|227833405|ref|YP_002835112.1| putative transcriptional accessory protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184393|ref|ZP_06043814.1| putative transcriptional accessory protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454421|gb|ACP33174.1| putative transcriptional accessory protein [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 759

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I +G V  V  FGAF+     +DGLVH+S +S + V+   DVV+ G  V V
Sbjct: 634 KVSDLKPGMILEGTVTNVAAFGAFIDIGVHQDGLVHVSAMSHKFVSDPHDVVRSGQVVKV 693

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K+++ D +R +I LS++ +D   GKP
Sbjct: 694 KVMEVDVERQRIGLSLR-LDDEPGKP 718


>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
           transport regulator 3 homolog) (Exosome component 6)
           [Ciona intestinalis]
          Length = 276

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 101/261 (38%), Gaps = 13/261 (4%)

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
            + +      +F +I+     +++ D++ R DGR     RD+  Q G++ +  GS+ F  
Sbjct: 9   PAPDISYNAKLFTEIEK---LSLLDDEEKRADGRYVTQPRDVFLQCGVITQAKGSAYFEM 65

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
             T+ I  V  G ++ E   +      +        + P ++ +      P   ++    
Sbjct: 66  NKTKVICSV-YGPKDIEMREEF--QINKGKLKCELKYAPYSSPKHG-DHIPGASDVEKSD 121

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           +   AI   +         + +   + E DGS   A +  +S+AL+DAG+ +   +   +
Sbjct: 122 ILLEAISSGVCLQRYPKSQIDVYVIVLEDDGSVMPAAITAASVALVDAGIEMYDVITASS 181

Query: 464 M------GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
           +        + D       S ++ ++ +  +    +      I  +   +  G +  N++
Sbjct: 182 IRIAGQDTFIIDPTSSEEFSPLNLEKSNDLNQGMVMVALLPSINQVSSVVSSGHLECNVL 241

Query: 518 VMALQQAKRGRLHILNEMSKV 538
             A++  +    ++ + + K 
Sbjct: 242 QEAIRSCRYSAQNLHSIVRKC 262



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 91/213 (42%), Gaps = 20/213 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R + L+ G I  Q+ G+      +T V+ +V   + ++  ++F      L    +   Y+
Sbjct: 45  RDVFLQCGVI-TQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLKCELKYAPYS 103

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             K           P  +++  S ++  +I       +  K++  V + V++ D    P 
Sbjct: 104 SPKHGDHI------PGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLEDDGSVMP- 156

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ--YVLNPRLDEDQGSLDLFVSGTQDAV 185
             ++ AAS AL+ +G+     +  + +  I GQ  ++++P   E+   L+L    + D  
Sbjct: 157 -AAITAASVALVDAGIEMYDVITASSI-RIAGQDTFIIDPTSSEEFSPLNL--EKSNDLN 212

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
             + + A   S + V   +  GH EC  + EAI
Sbjct: 213 QGMVMVALLPSINQVSSVVSSGHLECNVLQEAI 245


>gi|111023499|ref|YP_706471.1| RNA binding protein [Rhodococcus jostii RHA1]
 gi|110823029|gb|ABG98313.1| possible RNA binding protein [Rhodococcus jostii RHA1]
          Length = 778

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 19/149 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++G  G  +R I+  T A  +      +DD   +   +  + E+E      R   ++
Sbjct: 565 VRKIVGASGTGVREIIGNTSALRSLNPADFVDDRFGLPTVTDIIGELEKPGRDPRPEFKT 624

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    + K+         +G V  V  FGAFV     +DGLVH+S +S   V    DVV
Sbjct: 625 ATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVV 684

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           K GD V VK+L+ D+ R +I L++++ D+
Sbjct: 685 KSGDVVKVKVLEVDEARQRIGLTLRLDDE 713


>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
 gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
          Length = 493

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ +G V  +++FGAFV
Sbjct: 165 QEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFV 224

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 225 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLDVDMDRERVSLSLKATQEDPWQ 283



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV   
Sbjct: 280 DPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVD 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V+VK++D D +R +I LS+K  ++
Sbjct: 340 QDVFVKVIDIDLERRRISLSLKQANE 365



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           + + T  ++ I+D G          E+ AA +      +      I +G VVKV      
Sbjct: 1   MTDTTTPQIAINDIGG-------ADELMAAIDATIKYFND---GDIVEGTVVKVDHDEVL 50

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
           +      +G++   +LS +      ++V+ GD +   +L   D  G++ LS K   
Sbjct: 51  LDIGYKTEGVIPSRELSIKHDVDPGEIVEVGDEIEALVLQKEDKEGRLILSKKRAQ 106



 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +I  V    G  I  +V Q       +D     I S   A+ E A   I     + 
Sbjct: 72  VDPGEIVEV----GDEIEALVLQK------EDKEGRLILSKKRAQYERAWGTIE---QIK 118

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G+V++V+  G  V       G +  S +   RV      V  G  +  K+++ 
Sbjct: 119 EDEGVVTGRVIEVVKGGLIVDI--GLRGFLPASLVEMRRVRDLQPYV--GQEIEAKIIEL 174

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R  + LS +   + T
Sbjct: 175 DKNRNNVVLSRRAYLEET 192


>gi|194289459|ref|YP_002005366.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193223294|emb|CAQ69299.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 781

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   + +G V  V  FGAFV     +DG
Sbjct: 629 DILSELEKPGRDPRPEFKTATFQEGVEDVKDLQPGMVLEGVVTNVAAFGAFVDIGVHQDG 688

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVHIS LS + V    +VVK G  V VK+++ D  R +I LSM++ D+ 
Sbjct: 689 LVHISALSNKFVKDAHEVVKAGQIVKVKVMEVDVKRNRIGLSMRLDDEP 737


>gi|32491233|ref|NP_871487.1| 30S ribosomal protein S1 [Wigglesworthia glossinidia endosymbiont
           of Glossina brevipalpis]
 gi|25166440|dbj|BAC24630.1| rpsA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 554

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    IR+ I + GK +   V +   K N      V ++  ++ E E + E    +  + 
Sbjct: 136 VDIRPIRDTIHLEGKDLEFKVIKLDQKRN-----NVVVSRRAVIESENSAERDHILKILQ 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E +K   G V  + D+GAF+   G  DGL+HI+ ++ +RV   +++V  GD + VK+L F
Sbjct: 191 EGSKAV-GVVKNLTDYGAFIDL-GGVDGLLHITDMAWKRVKHPNEIVSIGDEITVKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K + Q+    I
Sbjct: 249 DKEKTRVSLGLKQLGQDPWIEI 270



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 19/198 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    +  L++ +   +   +          I +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESENSAERDHILKILQEGSKAVGVVKNLTDYGAFIDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE--------AAREMIRSITDVPEVN 620
               +    V+     V+I D+ TVKI      +               I      PE  
Sbjct: 219 HITDMAWKRVKHPNEIVSIGDEITVKILKFDKEKTRVSLGLKQLGQDPWIEISKRYPENV 278

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD- 678
           KI  G+V  + D+G FV      +GLVHIS++    +    S VV  GDTV V +LD D 
Sbjct: 279 KI-SGKVTNLTDYGCFVEIEEGVEGLVHISEMDWTNKNIHPSKVVNVGDTVNVLVLDIDE 337

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +R +I L +K    N  K
Sbjct: 338 ERRRISLGLKQCKPNPWK 355



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 101/258 (39%), Gaps = 38/258 (14%)

Query: 463 AMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
           A+G+VK+  D+    D+ G +   H+  M +K     + I ++        I+  I+   
Sbjct: 195 AVGVVKNLTDYGAFIDLGGVDGLLHITDMAWKRVKHPNEIVSIG-----DEITVKILKFD 249

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIR 575
            ++ +         + ++  +  +++ +  P    ++     + +      I  G + + 
Sbjct: 250 KEKTRVSL-----GLKQLGQDPWIEISKRYPENVKISGKVTNLTDYGCFVEIEEGVEGLV 304

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVN 620
            I E      NI     V +  +    +    E                 ++ + + +  
Sbjct: 305 HISEMDWTNKNIHPSKVVNVGDTVNVLVLDIDEERRRISLGLKQCKPNPWKNFSKLNKKG 364

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDF 677
              +G++  + DFG F+   G  DGLVH+S +S     +  + VKE   GD +   +L  
Sbjct: 365 DKVQGRIKSITDFGIFIGLEGGIDGLVHLSDVSWN--IQGEEAVKEYKKGDIISAMVLQV 422

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D DR +I L +K + ++ 
Sbjct: 423 DSDRERISLGIKQLSEDP 440


>gi|323494582|ref|ZP_08099686.1| transcription accessory protein [Vibrio brasiliensis LMG 20546]
 gi|323311185|gb|EGA64345.1| transcription accessory protein [Vibrio brasiliensis LMG 20546]
          Length = 772

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   + +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK GD V 
Sbjct: 643 NEVSDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRYVSDPREVVKAGDIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK+++ D  R +I LSM+ ++   G+ 
Sbjct: 703 VKVMEVDVKRKRIGLSMR-LNDEPGQD 728


>gi|312795455|ref|YP_004028377.1| SSU ribosomal protein S1P [Burkholderia rhizoxinica HKI 454]
 gi|312167230|emb|CBW74233.1| SSU ribosomal protein S1P [Burkholderia rhizoxinica HKI 454]
          Length = 598

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 11/201 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D      S   +  AL   +     I  ++   ++     +  F P   +   
Sbjct: 116 GDTILSRDKAKRLASWLALEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTR 175

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   +++     GK +   V +   K N      V ++  ++ E     E  + +  + E
Sbjct: 176 P---VKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKE 227

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD
Sbjct: 228 GA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFD 285

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            ++ ++ L +K +  +  + I
Sbjct: 286 QEKNRVSLGIKQLGDDPWEGI 306



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 301 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 360

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 361 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 392



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +      +G +  S+++ +RV    +V+KEG
Sbjct: 475 DPFSNFVAMNDKGSIVDGTVKAVDPKGAVIQLSVEVEGYLRASEIAQDRVEDARNVLKEG 534

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V V +++ D + + I+LS+K  D
Sbjct: 535 DKVNVMVINIDRKSRGIQLSIKAKD 559



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 369 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 424

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 425 GLVHLSDLSWS--ESGEEAVRKYKKGDEVEAMVLGIDVEKERISLGIKQLEGDP 476


>gi|293374966|ref|ZP_06621261.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909]
 gi|325843363|ref|ZP_08167946.1| putative ribosomal protein S1 [Turicibacter sp. HGF1]
 gi|292646376|gb|EFF64391.1| putative ribosomal protein S1 [Turicibacter sanguinis PC909]
 gi|325489392|gb|EGC91765.1| putative ribosomal protein S1 [Turicibacter sp. HGF1]
          Length = 559

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 14/141 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +P +++ + + +  +V   +++  G K+ +     +                      V
Sbjct: 233 HLPVEKVEDALTVNQEVSAKVIKVEGTKIQLSIKAVLPT-------------PFEQFVQV 279

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
              N++ +G VV++ +FGAFV      +GLVH+S+LS +  AK  +VV EG  V V+++ 
Sbjct: 280 HHENEVLEGTVVRLTEFGAFVELAKGVEGLVHLSELSWDHKAKLEEVVSEGQKVQVRIIL 339

Query: 677 FDDR-GKIKLSMKVVDQNTGK 696
            D +  +I LS+K V+Q+  +
Sbjct: 340 LDKKHNRIGLSLKKVEQDPWQ 360



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           + +G   +G  ++    +   E         V      I AM   +      E I++   
Sbjct: 46  VDIGGATEGTIYLNELTLDKVESAKD-----VVKVGDTIKAMAKKVD----DEQILLSRR 96

Query: 522 QQAKRGRLHILNEMSKVLSE-----SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
              +  R   L    +          R   G     + + A  P  + +V  +       
Sbjct: 97  ALLEYQRFQDLKVAYEKGETLEGRVIRTVKGGLIVNIGMDAFLPTNMVDVDFVTDLEQYV 156

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
             +     V  +        S  +   E  +           V  I  G+VV++  FGAF
Sbjct: 157 GQKMLVRIVEFNPRNKRIKVSRKIVVAEQLKVAREDQYSTLAVGDIVTGKVVRLEKFGAF 216

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           V F GA +GLVHIS++S   V K  D +     V  K++   +  KI+LS+K V    
Sbjct: 217 VRF-GALEGLVHISEISHLPVEKVEDALTVNQEVSAKVIKV-EGTKIQLSIKAVLPTP 272



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E     T   +V  +  G V  + D GAF+      +GL H ++ S     K + +V
Sbjct: 352 KKVEQDPWQTFSHKVGDVICGTVTNMTDLGAFIKVAPYIEGLCHFTEASWNPNKKLASLV 411

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              + V VK++  D  + ++ LS++ V +N  
Sbjct: 412 SVNEEVEVKIISLDVKKHRLGLSLRAVKENPW 443



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A +     T   +V  +  G+V  + D GAFV       G +  +Q++ +R+ +  DV+
Sbjct: 436 RAVKENPWNTVTLKVGDVITGKVESMNDRGAFVAIEEDVIGFLPANQITEKRINRVEDVL 495

Query: 665 KEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKP 697
             G+ V VK++ F+ +  K++LS++ + ++  + 
Sbjct: 496 SVGEVVEVKVMRFEPKQAKLELSIRRIKEDAERE 529



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                E+     +  +   +P VN I +G VV+V +    V   GA +G +++++L+ ++
Sbjct: 6   QVDHEEMTMNDVLEFTNFSLPSVNDIVEGVVVRVSNQEVTVDIGGATEGTIYLNELTLDK 65

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V    DVVK GDT+       DD  +I LS + + +
Sbjct: 66  VESAKDVVKVGDTIKAMAKKVDDE-QILLSRRALLE 100


>gi|119774871|ref|YP_927611.1| 30S ribosomal protein S1 [Shewanella amazonensis SB2B]
 gi|119767371|gb|ABL99941.1| SSU ribosomal protein S1P [Shewanella amazonensis SB2B]
          Length = 555

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 92/213 (43%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +         G T +  +      +  ++  A + A+     I  ++    +     +
Sbjct: 68  VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGI 127

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    +R+   +  K +   V +   K N      V ++  ++ E E++
Sbjct: 128 RAFLPGSL---VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVIESESS 179

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    + ++ E   + KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  
Sbjct: 180 AERDALLENLQEGQAV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNV 237

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGLKQCKTNPWED 356



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I  G V  V   G  V      +G + ++ +S ERV   S V   G
Sbjct: 439 DPFNGYVGDKKKGAIVNGTVTAVDAKGVTVELAEGVEGYIRVADISRERVEDASTVFSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K +  D + + + LS++  D+   K ++
Sbjct: 499 DAVEAKFMGVDRKNRNVSLSIRAKDEADEKEVM 531



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           +            +  
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKTN----PWEDFANRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S         S+  K+GD +   +L
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNATGEEAVSEY-KKGDEIEAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K  + + 
Sbjct: 421 SVDPERERISLGVKQTEDDP 440


>gi|322388030|ref|ZP_08061636.1| 30S ribosomal protein S1 [Streptococcus infantis ATCC 700779]
 gi|321141051|gb|EFX36550.1| 30S ribosomal protein S1 [Streptococcus infantis ATCC 700779]
          Length = 400

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+LD + D  ++ LS+K +++   + 
Sbjct: 328 EVTVKVLDVNADAERVSLSIKALEERPAQE 357



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +        +  G+V ++  F
Sbjct: 148 RFVGQEFEAKIKEVDPKENRFILSRREVVEAATAAARAEVFGKLAAGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEVEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|322392120|ref|ZP_08065582.1| 30S ribosomal protein S1 [Streptococcus peroris ATCC 700780]
 gi|321145020|gb|EFX40419.1| 30S ribosomal protein S1 [Streptococcus peroris ATCC 700780]
          Length = 400

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+LD + D  ++ LS+K +++   + 
Sbjct: 328 EVTVKVLDVNADAERVSLSIKALEERPAQE 357



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFEAKIKEVDPKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ V VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEVEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|318058293|ref|ZP_07977016.1| transcriptional accessory protein [Streptomyces sp. SA3_actG]
          Length = 748

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK GD V VK+LD 
Sbjct: 631 EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKVKVLDV 690

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I L++++ D+
Sbjct: 691 DLPRKRISLTLRLDDE 706


>gi|83312516|ref|YP_422780.1| TEX protein [Magnetospirillum magneticum AMB-1]
 gi|82947357|dbj|BAE52221.1| TEX protein [Magnetospirillum magneticum AMB-1]
          Length = 787

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +      +  +   I +G V  V +FGAFV     +DG
Sbjct: 631 DILKELEKPGRDPRPEFKTAAFKEGVETLNDLKPGMILEGVVTNVTNFGAFVDIGVHQDG 690

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           LVHIS L+   V    +VVK GD V VK+L+ D  R +I LSM++  Q  
Sbjct: 691 LVHISVLADRFVKDPHEVVKPGDLVKVKVLEVDIKRSRIALSMRMDAQPA 740


>gi|261878983|ref|ZP_06005410.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
 gi|270334440|gb|EFA45226.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
          Length = 141

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 2/96 (2%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             I+AA   I+ I  +PEV ++Y+G V  +M +G FV     ++GL+HIS++  +R+A  
Sbjct: 1   ESIDAALNKIKGIVAIPEVGEVYEGTVKSIMPYGCFVEILPGKEGLLHISEIEWKRLATV 60

Query: 661 SDV-VKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
            D  +KEGD + VKLLD D + GK KLS +V+ +  
Sbjct: 61  EDAGIKEGDKIQVKLLDIDAKTGKYKLSHRVLLEKP 96


>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
 gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
          Length = 497

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +RS   +     ++ KG V  +++FGAFV 
Sbjct: 175 ELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD 234

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 235 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWR 292



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   +++D D   V ++  +  E     +  R       + +I  G
Sbjct: 252 IDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWRQFARTHAIGQIVPG 306

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V     VV+    V VK++D D +R +I 
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRIS 366

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 367 LSLKQANE 374



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 44  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKEDK 103

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 104 EGRLILSKKRAQ 115


>gi|224368352|ref|YP_002602515.1| 30S ribosomal protein S1 [Desulfobacterium autotrophicum HRM2]
 gi|223691068|gb|ACN14351.1| RpsA1 [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 20/233 (8%)

Query: 472 DFIILSDISGDEDHLGHMDFK---VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           D   L D +G+  H    +     V+  +S IT  +     G  +  ++  A        
Sbjct: 65  DKAELLDKNGEFHHAVGDEISLYVVSMNESEITLSKSLSGAG--TATMLEEASFTGTPVE 122

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
             +   +    S + +    F P  ++     +   + +G     I    E+ G  + + 
Sbjct: 123 GKVAGTIKGGFSVTIMGKRAFCPVSQMDIKYIEDTESYVGSTFNFIITRFEEGGRNIVVS 182

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
               + + +         ++   +     +   I  G V K+M +GAF+      +G+ H
Sbjct: 183 RRDLLNLEN---------KDRQDAFFKEAKEGDILTGSVTKLMPYGAFIELVPGVEGMAH 233

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-----KIKLSMK-VVDQNTG 695
           IS+LS  RV K  +VVK+G+TV VKLL  + +      KI LS+K  + ++  
Sbjct: 234 ISELSWSRVDKAEEVVKQGETVKVKLLKIETKEGADMPKISLSIKQALSEDPW 286



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 116/301 (38%), Gaps = 49/301 (16%)

Query: 429 ITESDGS--SSMATVCGSSLALMDAGVPISK-PVAGIAMGLVKDGDDFIIL--------- 476
           +   + S  +   ++ G+  A M      +  PV G   G +K G    I+         
Sbjct: 88  VVSMNESEITLSKSLSGAGTATMLEEASFTGTPVEGKVAGTIKGGFSVTIMGKRAFCPVS 147

Query: 477 -SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
             DI   ED   ++    +  +  IT  +   +   +S   ++    + ++       + 
Sbjct: 148 QMDIKYIEDTESYV---GSTFNFIITRFEEGGRNIVVSRRDLLNLENKDRQDAFFKEAKE 204

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT--- 592
             +L+ S  +L  +   +E++             G + +  I E + ++V+  ++     
Sbjct: 205 GDILTGSVTKLMPYGAFIELV------------PGVEGMAHISELSWSRVDKAEEVVKQG 252

Query: 593 -------VKIASSSLAEIEA---------AREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                  +KI +   A++           + +   S            G+VV++  FGAF
Sbjct: 253 ETVKVKLLKIETKEGADMPKISLSIKQALSEDPWDSQAGTIAPGDQLTGKVVRLAPFGAF 312

Query: 637 VHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           V      DGLVH+S++S   R+ K  DVV  G+ V V + D D ++ +I LS+K    + 
Sbjct: 313 VEIAPGMDGLVHLSEMSHTRRIVKADDVVTLGEMVQVVVKDIDIEKRRISLSIKDALGDP 372

Query: 695 G 695
            
Sbjct: 373 W 373



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VK 665
           +    I +      I +  + K   FG F+       GL+  S  S    +K SD   +K
Sbjct: 371 DPWAGIAEKYAPGTIVETTMEKREQFGIFLSLEPGVTGLLPASVASKA--SKPSDYDSLK 428

Query: 666 EGDTVWVKLLDFD-DRGKIKL---SMKVVD 691
            GD V V +   D ++ +I L    MK  D
Sbjct: 429 PGDKVTVMVESADEEKRRISLAPPEMKDSD 458


>gi|119946634|ref|YP_944314.1| 30S ribosomal protein S1 [Psychromonas ingrahamii 37]
 gi|119865238|gb|ABM04715.1| SSU ribosomal protein S1P [Psychromonas ingrahamii 37]
          Length = 556

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 9/180 (5%)

Query: 522 QQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           ++A   +  ++  ++ KV     ++L      +    +    +R+   +  K I   V +
Sbjct: 99  EKAYEDQETVIGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTAHLENKDIEFKVIK 158

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
              K N      V ++  ++ E E + E    + ++ E  +I KG V  + D+GAFV   
Sbjct: 159 LDQKRN-----NVVVSRRAVIETENSVERDELLENLQEGQEI-KGIVKNLTDYGAFVDL- 211

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 212 GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIA 271



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   + V  +  L+  +    ++ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIETENSVERDELLENLQEGQEIKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +   +I        
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD   V +LD D +
Sbjct: 279 RLTGKVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDAAEVMVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 339 RRRISLGLKQCKANPWEE 356



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            +   +     +   I  G + +V   GA +      +G + +  ++ ERV   + V+K 
Sbjct: 438 IDPFNNYLAENKKGSIVVGTISEVDAKGATITLAEGVEGYIRVGDIARERVENAATVLKA 497

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           GD +  K +  D + + I LS+K  D+   K  V
Sbjct: 498 GDAIDAKFVGVDRKNRVISLSIKAKDEADEKEAV 531



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +           +   +  +   G++  + DFG F+   G  D
Sbjct: 333 LDIDEERRRISLGLKQCKAN----PWEEFSSTHDKGQKVSGKIKSITDFGIFIGLDGNID 388

Query: 645 GLVHISQLSTERVAKTSDVV--KEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVH+S +S E       V+  K+GD +   +L  D +R +I L +K +
Sbjct: 389 GLVHLSDISWE-AEGEKAVLDYKKGDEIEAVVLQVDPERERISLGIKQI 436


>gi|1098475|gb|AAC37046.1| region E; orf; homologous to E. coli o622, Accession Number U18997
           [Neisseria meningitidis]
          Length = 757

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|73947485|ref|XP_852838.1| PREDICTED: similar to Exosome complex exonuclease RRP46 (Ribosomal
           RNA processing protein 46) (Exosome component 5) (p12B)
           (Chronic myelogenous leukemia tumor antigen 28) [Canis
           familiaris]
          Length = 235

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
             + +AL+DAGVP+     G+   L  DG    ++ D +  ++         A
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALNSDG---TLVLDPTAKQEKEARAVLTFA 184



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 22/150 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E    R+I  +   +       +    V++ V+      S     + AA  AL+ +G
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVS--DAGSLLACCLNAACMALVDAG 145

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
           +P      G       +G  VL+P   +++
Sbjct: 146 VPMRALFCGVTCALNSDGTLVLDPTAKQEK 175


>gi|313905272|ref|ZP_07838639.1| Tex-like protein [Eubacterium cellulosolvens 6]
 gi|313469883|gb|EFR65218.1| Tex-like protein [Eubacterium cellulosolvens 6]
          Length = 734

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 104/270 (38%), Gaps = 23/270 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +     +  +S  LM+    I+K +A   +   ++   F     +         
Sbjct: 481 VVEDCVNRVGVDLNTASAPLMEHISGINKTIAKNIVAFREENGRFESRKQLLKVPKLGPK 540

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       A +     R   L++ +   S +    G 
Sbjct: 541 AFEQCAGFMR-IAGGKEPLDNTGVHPESYAAADELI---RELGLDKETVFASVAVTGEGS 596

Query: 549 FTPRVEIMAIPPDQIRNV---IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
            T       +           +G+G   +R IV++  A                  ++  
Sbjct: 597 GTKTSGKAKVKVKDYAAFAEKLGIGEPTLRDIVKELNA-----------PGRDPREDMPK 645

Query: 606 A--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSD 662
              R  + S+ D+ E   I KG V  V+DFGAFV     +DGLVHIS++S  + V    D
Sbjct: 646 PVLRSDVLSMEDLKEG-MILKGTVRNVIDFGAFVDIGVHQDGLVHISEMSDRKFVKHPLD 704

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           VV  GD V VK++  D  + +I LSMK ++
Sbjct: 705 VVSVGDIVKVKVISVDLSKKRIGLSMKGIE 734


>gi|120553955|ref|YP_958306.1| 30S ribosomal protein S1 [Marinobacter aquaeolei VT8]
 gi|120323804|gb|ABM18119.1| SSU ribosomal protein S1P [Marinobacter aquaeolei VT8]
          Length = 563

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 11/201 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  +      +  ++  + +  +  +  I  ++    +     +  F P      +
Sbjct: 80  GETRLSREKAKRAEAWKVLEKSFEAEEVVKGIINGKVKGGFTVDLAGIRAFLPGSL---V 136

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               +R+   +  K +   V +   K N      V ++  ++ E E + +    +  + E
Sbjct: 137 DVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVLEAENSEQREALLETLTE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             +I KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L FD
Sbjct: 192 GLEI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEINVKVLKFD 249

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            +R ++ L +K + ++    I
Sbjct: 250 RERNRVSLGLKQLGEDPWVDI 270



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+   +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +L
Sbjct: 275 PEGSKV-TARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMIL 333

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           D D +R +I L +K    N  + 
Sbjct: 334 DIDEERRRISLGIKQCVANPWED 356



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  ++      ++ID++                       +   
Sbjct: 316 IHPSKVVQV----GDEVEVMI------LDIDEERRRISLGIKQCVAN----PWEDFSSNF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKL 674
                  G++  + DFG F+   G  DGLVH+S +S        + V+E   GD V   +
Sbjct: 362 NKGDRISGKIKSITDFGIFIGLDGGIDGLVHLSDISWNETG--EEAVREYKKGDEVETVI 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 420 LSVDPERERISLGIKQLESDP 440



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       + +   I KG V  V   GA +      + ++  S++S +RV    +V+KEG
Sbjct: 439 DPFAEFVQLNDKGSIVKGTVSAVDAKGATIALNEEVEAVLKASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + V  K++  D + + I LS+K  D
Sbjct: 499 EEVEAKIISIDRKNRVINLSVKSKD 523


>gi|330720456|gb|EGG98764.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
           proteobacterium IMCC2047]
          Length = 561

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                    A  +         + + + +G +  V +FGAFV     +DGLVHIS L+ +
Sbjct: 414 RDPRPEFKMAQLKEGVETIKDLQPDMVLEGTITNVTNFGAFVDIGVHQDGLVHISALADK 473

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD-----QNTGKP 697
            V     VVK GD V VK++  D +R +I L+M++ D     Q  G+P
Sbjct: 474 FVKDPHSVVKAGDIVKVKVMAVDVERKRIGLTMRMADSAADQQGQGEP 521


>gi|332284738|ref|YP_004416649.1| transcription accessory protein [Pusillimonas sp. T7-7]
 gi|330428691|gb|AEC20025.1| transcription accessory protein [Pusillimonas sp. T7-7]
          Length = 571

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  AL+  +     I  ++   L+     +  F P      +    +++     GK + 
Sbjct: 107 QLEQALESGEMVNGTITGKVKGGLTVMTNGIRAFLPGSL---VDLRPVKDTTPYEGKTME 163

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             V +   K N      V ++  ++ E     E  + +  + E   + KG V  + D+GA
Sbjct: 164 FKVIKLDRKRN-----NVVLSRRAVLEASMGEERQKLLETLSEGA-VVKGVVKNITDYGA 217

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++  RV   S+V++ G  V  K+L FD ++ ++ L +K + ++ 
Sbjct: 218 FVDL-GGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDP 276

Query: 695 G 695
            
Sbjct: 277 W 277



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 275 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 334

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N  + 
Sbjct: 335 GDEVEVMVLEIDEDRRRISLGMKQCRANPWEE 366



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                       +   +     +G +  + DFG FV   G  D
Sbjct: 343 LEIDEDRRRISLGMKQCRAN----PWEEFSINFKRGDKVRGAIKSITDFGVFVGLPGGID 398

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D D+ +I L +K ++ + 
Sbjct: 399 GLVHLSDLSWTETGE-EAVRNFKKGDEIDAVVLGIDTDKERISLGIKQLEGDP 450



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G +  V   GA V      +G +  S++ST RV   S V+  G
Sbjct: 449 DPFNNFVATYDKGAVVPGVIKSVEARGAVVTLSVDVEGYLRASEISTGRVEDASTVLNVG 508

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           DTV   +++ D + + I+LS+K  D
Sbjct: 509 DTVDTMIINIDRKTRSIQLSIKARD 533


>gi|239624552|ref|ZP_04667583.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520938|gb|EEQ60804.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 258

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 10/214 (4%)

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED    ++      +     +  +    G         ++     ++ I   +   +  
Sbjct: 26  MEDFAAELEASYQTLNKRHIELAEEESGEGAKWAQFAQMMEDKTVVKVKISEAVKGGVVT 85

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           S  ++  F P  ++     +++ +  G   +            + +D +    + S    
Sbjct: 86  SLEEVRAFIPASQLSTEYVEKLEDWQGKYVE---------CVIITVDPEKKRLVLSGREV 136

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E        ++     +   + +G V  +  +GAF+      DGL+HISQ+ST+R+    
Sbjct: 137 ERGKKEAEKQARMAQFKAGDVVEGTVDSIKPYGAFIKLDEGVDGLLHISQISTQRIKHPG 196

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            V+ EG TV VK+L  D+ GK+ LSM+ + + T 
Sbjct: 197 AVLTEGQTVKVKILSTDN-GKLSLSMRALAEQTA 229


>gi|90416549|ref|ZP_01224480.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2207]
 gi|90331748|gb|EAS46976.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2207]
          Length = 557

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 11/215 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +      S   +  A +  +     I  ++    +    
Sbjct: 66  DEVQVALEAVEDGFGATKLSREKARRAESWIELEAAHKADEVVIGVISGKVKGGFTVDVR 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            L  F P      +    +R +  +    +   V +   K N      V ++  ++ E  
Sbjct: 126 GLRAFLPGSL---VDVRPLREITHLENIELEFKVIKLDPKRN-----NVVVSRRAVMESA 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E    + ++ E   + KG +  + D+GAFV   G  DGL+HI+ +S +R+   S+++
Sbjct: 178 NSVEREELLANLEEGASL-KGVIKNLTDYGAFVDL-GGIDGLLHITDMSWKRIKHPSEMI 235

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD + VK+L FD +R ++ L MK + ++    I
Sbjct: 236 NVGDEIDVKVLKFDRERNRVSLGMKQMGEDPWGDI 270



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQV 627
              ++     +N+ D+  VK+          +  M +   D     K         K ++
Sbjct: 225 WKRIKHPSEMINVGDEIDVKVLKFDRERNRVSLGMKQMGEDPWGDIKGRYPEGARAKAKI 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
             + D+G F       +GLVH+S++    +    S +V  GD V V +LD D+ R +I L
Sbjct: 285 TNLTDYGCFAELEDGVEGLVHVSEMDWTNKNVHPSKIVNLGDEVEVMVLDIDEERRRISL 344

Query: 686 SMKVVDQNTGKP 697
            +K    N    
Sbjct: 345 GIKQCHTNPWDD 356



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I KG V +V   GA V      +  +  S+LS ++V      ++EG
Sbjct: 439 DPFNNYVTENDKGAIVKGIVKEVDAKGATVDLGNDIEAYLKGSELSRDKVEDARHELQEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             +  K+++ D + + I LS+K  D    K +V
Sbjct: 499 QEIEAKIINVDRKTRAISLSVKAKDVAEEKAVV 531



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +I N+    G  +  +V      ++ID++                       T + 
Sbjct: 316 VHPSKIVNL----GDEVEVMV------LDIDEERRRISLGIKQCHTN---PWDDFATTMV 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
           + +KI  G++  + DFG F+   G  DGLVH+S +S     +   V   K+G+ V   +L
Sbjct: 363 KGDKI-SGKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGE-EAVRNFKKGEEVETVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K +  + 
Sbjct: 421 SIDAERERISLGIKQLSDDP 440


>gi|33571751|emb|CAE41252.1| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
          Length = 576

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 81  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTN 140

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 141 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 192

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 193 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 250

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 251 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 282



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 280 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 340 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 371



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD +   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWT--ESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQLEGDP 455



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G +  V   GA +      +G +  S++S+ RV   + V+K G
Sbjct: 454 DPFNNFVATHDKGAVVPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + +   +++ D + + I+LS+K  D
Sbjct: 514 ENIEAMIVNIDRKARSIQLSIKARD 538


>gi|189219063|ref|YP_001939704.1| ribosomal protein S1 [Methylacidiphilum infernorum V4]
 gi|189185921|gb|ACD83106.1| Ribosomal protein S1 [Methylacidiphilum infernorum V4]
          Length = 449

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 99/265 (37%), Gaps = 30/265 (11%)

Query: 453 VPISKPVAG-IAMGLVKDGDDFIILSDISGDED------HLGHMDFKVAGTDSGITAMQM 505
           V I   V G I  G+V D     ++ DI    +           D    G +  +    +
Sbjct: 7   VSIPDFVEGNIVKGIVVDKTPKEVVVDIGYKSEGIIPLSEFEEPDSIQIGQEVEVLVESL 66

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG----------EFTPRVEI 555
           + + G +  +    A +Q     L    E   +  + +  +            F P  +I
Sbjct: 67  ENEEGMVVLSRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGLMLNIGVEAFLPASQI 126

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SIT 614
             +PP  ++   G               K+    +    +  S    +EA R   R    
Sbjct: 127 DIVPPKNLKEYEGATLT----------CKIVKISEERKNVVLSRREIVEAERNQKRLQFL 176

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +   V  + KG V  V DFGAF+      DGL+HI+ +S  R+   S+++K G  + V +
Sbjct: 177 EKVHVGDLVKGVVKNVTDFGAFIDL-DGIDGLIHITDMSWGRINHPSEILKVGQEIEVVV 235

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPI 698
           +D D ++ ++ L +K    N  + I
Sbjct: 236 IDVDREKERVSLGLKQKTPNPWENI 260



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 103/258 (39%), Gaps = 16/258 (6%)

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
              V  +  G+VK+  DF    D+ G +   H+  M +      S I  +  ++++  I 
Sbjct: 178 KVHVGDLVKGVVKNVTDFGAFIDLDGIDGLIHITDMSWGRINHPSEILKVGQEIEVVVID 237

Query: 514 ENIMVMALQQAKRGRL----HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            +     +    + +       + E   + ++ + ++    P    + + P  I  +I +
Sbjct: 238 VDREKERVSLGLKQKTPNPWENIEEKYPIGTKVKGKVVNLAPYGAFIELEPG-IEGLIHI 296

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE-----AARE--MIRSITDVPEVNKI 622
                   + +    +++  +    +   +  E +      A E       ++      +
Sbjct: 297 SEISWTQKITKPSEVLSMGQEVEAIVLDLNKEEQKLSLSLKALEVNPWEKASETYPPGSL 356

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDDRG 681
            KG+V     +GA+V      DG +H++ LS  R +   S+V+K+G+ +  K+L+ D   
Sbjct: 357 IKGKVKNFSAYGAYVELENGLDGFIHVNDLSWTRKINHPSEVLKKGEQIEAKVLEIDKTN 416

Query: 682 -KIKLSMKVVDQNTGKPI 698
            KI L +K + ++  K I
Sbjct: 417 QKILLGIKQLTEDPWKEI 434


>gi|167031288|ref|YP_001666519.1| RNA-binding S1 domain-containing protein [Pseudomonas putida GB-1]
 gi|166857776|gb|ABY96183.1| RNA binding S1 domain protein [Pseudomonas putida GB-1]
          Length = 774

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   ++ IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTERDIRSLIGDSSFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQV 627
               K   D+   +   +  L E++      R                  E   I +G V
Sbjct: 599 --DPKKFTDESFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|254496032|ref|ZP_05108934.1| transcription accessory protein [Legionella drancourtii LLAP12]
 gi|254354743|gb|EET13376.1| transcription accessory protein [Legionella drancourtii LLAP12]
          Length = 780

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  I  + E   I +G V  V +FGAFV     +DGLVHIS ++ + +     VVK 
Sbjct: 638 KEGVEDINHLHEG-MILEGVVSNVTNFGAFVDIGVHQDGLVHISAMTNKFITDPRTVVKA 696

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD V VK+++ D +R +I LSMK +D +   P+V
Sbjct: 697 GDIVTVKVVEVDKERKRIGLSMK-LDDSASAPLV 729


>gi|114666961|ref|XP_001153951.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 isoform 1 [Pan
           troglodytes]
          Length = 1007

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Tribolium castaneum]
          Length = 282

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 88/216 (40%), Gaps = 10/216 (4%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
                 ++     R DGR S   R I  + G++ +  GS+      T+ IV V    RE 
Sbjct: 29  KTQFSEIVQPNGTRADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSV-FDPREI 87

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
               D    + + +    + F P +  +  R+      E     + ++A+   + +    
Sbjct: 88  PNKTDY---SSKGEIYCEFKFAPFSCHKR-RLHQQDAEEQQFSAIMKQALESAVFRHEFP 143

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
            + + I + +  +DG++  A +  + +AL  AG+P+   +  + + +  +     +L D 
Sbjct: 144 NFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGN----HLLVDP 199

Query: 480 SGDEDHLGHMD-FKVAGTDSGITAMQMDMKIGGISE 514
           + +E+ L  +  FK    + GI  + +      IS+
Sbjct: 200 TLEEERLCQVPLFKEEENNHGIVVLSVLATHEQISQ 235



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 65/161 (40%), Gaps = 10/161 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + L+TG ++ Q+ G+      +T V+ +V   R + +  D+      Y E  +A    
Sbjct: 52  RKIFLKTGVVS-QAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFA---- 106

Query: 74  PGGYLRRESRPTE-NEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVS 130
           P    +R     +  E   S ++ +++       +    +  +   V+ +D  +    ++
Sbjct: 107 PFSCHKRRLHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAIT 166

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
                 AL  +G+P    +    +       +++P L+E++
Sbjct: 167 AAG--VALAHAGIPMYDLITSVTLAVQGNHLLVDPTLEEER 205


>gi|33574088|emb|CAE38413.1| 30S ribosomal protein S1 [Bordetella parapertussis]
 gi|33576879|emb|CAE33959.1| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
          Length = 576

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 81  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTN 140

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 141 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 192

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 193 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 250

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 251 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 282



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 280 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 340 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 371



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD +   +L  D D+ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWT--ESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQLEGDP 455



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G +  V   GA +      +G +  S++S+ RV   + V+K G
Sbjct: 454 DPFNNFVATHDKGAVVPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + +   +++ D + + I+LS+K  D
Sbjct: 514 ENIEAMIVNIDRKARSIQLSIKARD 538


>gi|95931126|ref|ZP_01313851.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95132816|gb|EAT14490.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 747

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 9/177 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP-PDQIRNVIGMGGKVIR----- 575
            +A       L        ++     E    VE MA      + ++IG   K+ R     
Sbjct: 566 AKAYEQAAGFLRVKGAHPLDNSAVHPENYALVEQMAADLAMDVASLIGAADKIKRLDLQR 625

Query: 576 GIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
            + ++ G     +I D+              A+           +   + +G V  V  F
Sbjct: 626 YVCDEVGLPTLRDIRDELLKPGRDPRRQFETASFRDDVQEMSDLQPGMVLQGSVTNVAAF 685

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           GAFV     +DGLVHIS+L+   V   +++VK G  V VK+L  D  R +I LS+K 
Sbjct: 686 GAFVDIGVHQDGLVHISELADRFVKNPAEIVKVGQVVHVKVLSVDTTRKRISLSIKQ 742


>gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 484

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     V K G
Sbjct: 282 DPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V+VK++D D +R +I LS+K  ++
Sbjct: 342 DEVFVKVIDIDLERRRISLSLKQANE 367



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 39/286 (13%)

Query: 449 MDAGVPISKPVAGIAMGLVKD-----GDDFIILSDISGDEDHLGHMD-----FKVAGTDS 498
           M    P   PVA   +G  ++      +      D    E  +  +D       +     
Sbjct: 1   MTTTTPSPAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTE 60

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL-SESRLQLGEFTPRVEIMA 557
           G+   +       +  + +V    + +   L   ++  ++L S+ R Q       +E + 
Sbjct: 61  GVILARELSIKHDVDPDEIVSVGDEIEALVLQKEDKEGRLLLSKKRAQYERAWGTIERIK 120

Query: 558 ----IPPDQIRNV--------IGMGGKVIRGIVE-------------QTGAKVNIDDDGT 592
               +    +  V        IG+ G +   +VE             +  AK+   D   
Sbjct: 121 EEDGVVTGSVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180

Query: 593 VKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
             +  S  A +E  +  +R+      +  ++  G V  +++FGAFV   G  DGLVH+S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSE 239

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++  +
Sbjct: 240 LSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQ 285


>gi|318079275|ref|ZP_07986607.1| transcriptional accessory protein [Streptomyces sp. SA3_actF]
          Length = 741

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK GD V VK+LD 
Sbjct: 631 EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKVKVLDV 690

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I L++++ D+
Sbjct: 691 DLPRKRISLTLRLDDE 706


>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 407

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ I+  V++    ++ +++  +  A   L     A    + I    
Sbjct: 147 VERHFVEDFSDYKGRSIKVKVKE----IDRENNKVILSAKEVLEADFEA--NKQKIIASL 200

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +  +G V ++  FGAF+   G  DGLVH+S++S + VA   D V EG +V VK+L  
Sbjct: 201 EPGQELEGTVQRLTPFGAFIDI-GGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKV 259

Query: 678 DD-RGKIKLSMKVVDQNTG 695
           D   GKI LSMK       
Sbjct: 260 DPAAGKISLSMKAAQPGPW 278



 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 20/250 (8%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGH--MDFKVAGTDSGITAMQMDMKIGGISENI 516
           +A +  G +            S  E H      D+K       +  +  +     +S   
Sbjct: 124 IADVVKGGLVADVGVRGFIPASMVERHFVEDFSDYKGRSIKVKVKEIDRENNKVILSAKE 183

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM--AIPPDQIRNVIGMGGKVI 574
           ++ A  +A + ++           E   +L     R+      I    I  ++ +     
Sbjct: 184 VLEADFEANKQKI-------IASLEPGQELEGTVQRLTPFGAFIDIGGIDGLVHVSEISW 236

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAE------IEAARE-MIRSITDVPEVNKIYKGQV 627
           +  V      V+      VK+     A       ++AA+     S  +      I  G V
Sbjct: 237 QH-VAHPKDAVSEGQSVRVKVLKVDPAAGKISLSMKAAQPGPWDSAINSFNTGDIVTGTV 295

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
            +++DFGAF+      +GLVHISQ++   VA   +V+KEG  V  K+LDF+  + ++ LS
Sbjct: 296 RRIVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLS 355

Query: 687 MKVVDQNTGK 696
           +K  ++   +
Sbjct: 356 IKETEEAPEQ 365



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     KG +VK+ D  A V      DG++ + +LS+ ++   +  V+ G  V +K++  
Sbjct: 28  KKGDTVKGTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSI 87

Query: 678 DD-RGKIKLSMKVVD-QNTGKPI 698
           DD + K+ LS + +D +   + +
Sbjct: 88  DDEKEKLVLSKRAIDGEKAWEEL 110


>gi|300864265|ref|ZP_07109145.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337730|emb|CBN54291.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 746

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 16/165 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDD 589
           ++  ++K LS    Q+ + + +V+ + I       +   G   +R I+++      +  D
Sbjct: 570 VVEAIAKDLSVPLAQITQLSEKVKSINIKKYVTETI---GEPTLRDIIKELEKPGRDPRD 626

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +                +E I+ I+D+    ++ +G V  V +FGAFV     +DGLVHI
Sbjct: 627 EFKYATF----------KEGIKEISDLNVGMEL-EGIVTNVANFGAFVDIGVHQDGLVHI 675

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
           SQL+   V     +VK G  V V++L+ +++  +I LSMK+ +Q 
Sbjct: 676 SQLADRFVEDPKLIVKVGQVVKVRVLEVNEKLKRISLSMKLQEQQ 720


>gi|296447758|ref|ZP_06889673.1| ribosomal protein S1 [Methylosinus trichosporium OB3b]
 gi|296254735|gb|EFH01847.1| ribosomal protein S1 [Methylosinus trichosporium OB3b]
          Length = 577

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 60/109 (55%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEESRAEQRHEIVANLEEG-QVIEGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   S+V+  G +V VK++  + +  +I L MK + ++  + I
Sbjct: 231 DVAWRRVNHPSEVLSIGQSVRVKIIKINHETHRISLGMKQLLEDPWQGI 279



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPIGAKFHGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVAT 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 334 SQEVDVQVLEVDPVKRRISLGLKQTLQNPWE 364



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +         G+V    +FG F+   G  DG+VH+S L   R   +  +  K
Sbjct: 360 QNPWEAFAEKHPQGSTVSGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYK 419

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD +  ++LD D ++ +I L +K +  + 
Sbjct: 420 KGDMITAQVLDVDIEKERISLGVKQLANDP 449



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 581 TGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           T   +++D +   + +    LA    A           +   +   +V++V + G  V  
Sbjct: 425 TAQVLDVDIEKERISLGVKQLANDPFASISAEEGAGEVKKGAVVTTEVLEVKEAGLEVKI 484

Query: 640 CG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
            G      +  ++L+ +R  +  +    G+ V V++  FD +  K+ +S+K ++    K 
Sbjct: 485 IGTDLTTFIKRNELARDRADQRPERFAVGEKVDVRITLFDRKARKVAVSIKALEMAEEKE 544

Query: 698 IV 699
            +
Sbjct: 545 AI 546


>gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 484

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +   R       +  +I KG V  +++FGAFV
Sbjct: 167 QELEAKIIELDKNRNNVVLSRRAWLEQTQSETRHNFLQQLQKGQIRKGIVSSIVNFGAFV 226

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D +R ++ LS+K   ++  +
Sbjct: 227 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMERERVSLSLKATQEDPWQ 285



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      ++ +I  G+V K++ FGAFV      +GLVH+S+L+   V     VV  G
Sbjct: 282 DPWQLFARTHQIGEIVPGKVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V VK++D D +R +I LS+K  ++
Sbjct: 342 DEVLVKIIDIDLERRRISLSLKQANE 367



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL-LDFDD 679
            I KG VVKV      +      +G++   +LS +      +VV  GD +   +    D 
Sbjct: 37  DIVKGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVSVGDEIEALVQQKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +D     I S   A+ E A   I     + E + +  G V++V+  G  V       G +
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIE---KIKEEDGVVTGTVIEVVKGGLIVDI--GLRGFL 148

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             S +   RV      V  G  +  K+++ D +R  + LS +   + T
Sbjct: 149 PASLVEMRRVRDLQPYV--GQELEAKIIELDKNRNNVVLSRRAWLEQT 194


>gi|261366361|ref|ZP_05979244.1| protein YhgF [Subdoligranulum variabile DSM 15176]
 gi|282571964|gb|EFB77499.1| protein YhgF [Subdoligranulum variabile DSM 15176]
          Length = 719

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 565 NVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
             +G+G   +  IV E      ++ D     +  S +  +E  +  +             
Sbjct: 603 ETLGVGAPTLHDIVSELCKPGRDVRDSLPKPLLRSDVMSLEDLKPGME-----------L 651

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G V  V+DFGAFV     +DGLVHISQ+S   +    +V+K GD V VK+L  D  + +
Sbjct: 652 TGTVRNVIDFGAFVDLGVHQDGLVHISQISNRFIKHPREVLKVGDIVKVKVLSVDVAKKR 711

Query: 683 IKLSMKVV 690
           I L+MK +
Sbjct: 712 IALTMKGL 719


>gi|71066049|ref|YP_264776.1| 30S ribosomal protein S1 [Psychrobacter arcticus 273-4]
 gi|71039034|gb|AAZ19342.1| SSU ribosomal protein S1P [Psychrobacter arcticus 273-4]
          Length = 563

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +  +      G T +  +      + N +       +  +  I +++    +     +
Sbjct: 69  VDVVVEAVDNGMGQTLLSREKAKRVETWNFLEKISDNDEIVKGIISSKVKGGFTVDIGSV 128

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    IR+   + GK +   V +   K N      V ++  ++ E E +
Sbjct: 129 RAFLPGSL---VDVRPIRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVMEAENS 180

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E  +I +G V  + D+GAFV   G  DGL+HI+ ++  R+   S+VV+ 
Sbjct: 181 AEREELLNKLEEGIEI-EGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEV 238

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  + VK+L FD +R ++ L +K +  +    +
Sbjct: 239 GQDLKVKVLKFDRERNRVSLGLKQLGTDPWDNV 271



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     V  + K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNVGGTYPVGSVVKARVTNLTDYGCFAEISEGIEGLVHVSEMDHTNKNIHPSKVVQV 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +LD D+ R +I L +K    N    
Sbjct: 326 GDEVEVMILDIDEERRRISLGIKQTLANPWDE 357



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V +V   GA +      +  +  S++  +RV   +  +  GD V  K++  D + 
Sbjct: 454 IVNGKVKEVDAKGATIELADEVEAYLRASEIQRDRVEDATKHLTVGDDVEAKIISVDRKT 513

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D+   +
Sbjct: 514 RNISLSIKAKDEAEER 529



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  ++      ++ID++                           
Sbjct: 317 IHPSKVVQV----GDEVEVMI------LDIDEERRRISLGIKQTLAN----PWDEFDKKH 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           E      G +  + DFG F+   G  DGLVH+S +S             +GDTV   +L 
Sbjct: 363 ERGDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEDAIRNYNKGDTVEAMVLS 422

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +  +I L +K +  + 
Sbjct: 423 VDSEANRISLGVKQLTSDP 441


>gi|149928276|ref|ZP_01916519.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
 gi|149823005|gb|EDM82247.1| 30S ribosomal protein S1 [Limnobacter sp. MED105]
          Length = 567

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL+  +     I  ++   L+     +  F P      +    +++     GK +  
Sbjct: 106 LEQALESGELVTGTITGKVKGGLTVMVNSIRAFLPGSL---VDVRPVKDTTPFEGKTLEF 162

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + ++++ E + + KG V  + D+GAF
Sbjct: 163 KVIKLDRKRN-----NVVLSRRAVVEATMGEEREKLLSNLQEGS-VVKGIVKNITDYGAF 216

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ L+  RV   S+V+  G+ +  K+L FD ++ ++ L +K + ++  
Sbjct: 217 VDL-GGIDGLLHITDLAWRRVRHPSEVLTVGEEIEAKVLKFDQEKNRVSLGVKQLGEDPW 275



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +      VV  GD V V +L+ D +R +
Sbjct: 290 GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNVDPKKVVTLGDEVEVMVLEIDEERRR 349

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 350 ISLGMKQCAANPWEE 364



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++              AA       T   + +K+  G +  + DFG F+   G  D
Sbjct: 341 LEIDEERRRISLGMKQC---AANPWEEFSTSFKKGDKV-SGAIKSITDFGVFIGLPGGID 396

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD V   +L  D +R +I L +K +  + 
Sbjct: 397 GLVHLSDLSWNETGE-EAVRRFKKGDEVEALVLAIDTERERISLGIKQLSGDP 448



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
             G V  V   G  V      +G +  S++S +RV    +  KEGD V   +++ D + +
Sbjct: 462 VNGTVKSVDAKGVVVDLGDDIEGYLRASEISNDRVEDARNAYKEGDAVTAMVINVDRKAR 521

Query: 683 -IKLSMKVVDQ 692
            I LS+K  DQ
Sbjct: 522 SIALSIKAKDQ 532


>gi|326391645|ref|ZP_08213172.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992298|gb|EGD50763.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 143

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DANGRISLSIK 74


>gi|319943161|ref|ZP_08017444.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
 gi|319743703|gb|EFV96107.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
          Length = 583

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 93/232 (40%), Gaps = 11/232 (4%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
             V   + +    ++   E     +         G T +  D      +   + +AL+  
Sbjct: 69  SYVPVEEFYNDRGELEVQEGDFVSVAIDSLEDGFGETRLSRDRAKRLAAWVQLELALESG 128

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
                 +  ++   L+     +  F P      I    +++     GK +   V +   +
Sbjct: 129 DLVTGTVTGKVKGGLTVMTNGIRAFLPGSL---IDTRPVKDTTPYEGKTLEFKVIKLDRR 185

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            N      V ++  ++ E+    E  + +  + E   + +G V  + D+GAFV   G  D
Sbjct: 186 RN-----NVVLSRRAVIELSQGEERAKLLETLTEGA-VVQGVVKNITDYGAFVDL-GGID 238

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+HI+ ++  RV   ++V++ G  +  K+L FD ++ ++ L +K + ++  
Sbjct: 239 GLLHITDMAWRRVRHPTEVLQVGQEITAKVLKFDQEKNRVSLGIKQLGEDPW 290



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV  GD V V +L+ D DR +
Sbjct: 305 GKVTNITDYGAFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVMVLEIDEDRRR 364

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 365 ISLGMKQTHANPWQE 379



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 95/259 (36%), Gaps = 36/259 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            +  G+VK+  D+    D+ G +   H+  M ++     + +  +  +     I+  ++ 
Sbjct: 216 AVVQGVVKNITDYGAFVDLGGIDGLLHITDMAWRRVRHPTEVLQVGQE-----ITAKVLK 270

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P+   M      I +      I  G + 
Sbjct: 271 FDQEKNRVS-----LGIKQLGEDPWVGISRRYPQNTRMFGKVTNITDYGAFVEIEPGIEG 325

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      N++    V +       +    E                 +  ++   
Sbjct: 326 LVHVSEMDWTNKNVNPSKVVSLGDEVEVMVLEIDEDRRRISLGMKQTHANPWQEFSENHR 385

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLD 676
            N   KG +  + DFG F+   G  DGLVH+S LS  +       D  K+GD V   +L 
Sbjct: 386 RNDRVKGSIKSITDFGVFIGLPGGIDGLVHLSDLSWNKSGEEAVRD-FKKGDEVEAVVLG 444

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K ++ + 
Sbjct: 445 IDVERERISLGIKQLEGDP 463



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +RV      + EG
Sbjct: 462 DPFTNFASTHDKGSVVTGTVTSVDARGATIQIEPEVEGYLRASEISRDRVEDARTHLSEG 521

Query: 668 DTVWVKLLDFDDRGK-IKLSMKV 689
            TV   +++ D + + I LS+K 
Sbjct: 522 ATVESMIINIDRKNRSIALSIKA 544


>gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20]
 gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505]
          Length = 484

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     V K G
Sbjct: 282 DPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V+VK++D D +R +I LS+K  ++
Sbjct: 342 DEVFVKVIDIDLERRRISLSLKQANE 367



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 39/286 (13%)

Query: 449 MDAGVPISKPVAGIAMGLVKD-----GDDFIILSDISGDEDHLGHMD-----FKVAGTDS 498
           M    P   PVA   +G  ++      +      D    E  +  +D       +     
Sbjct: 1   MTTTTPSPAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTE 60

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL-SESRLQLGEFTPRVEIMA 557
           G+   +       +  + +V    + +   L   ++  ++L S+ R Q       +E + 
Sbjct: 61  GVILARELSIKHDVDPDEIVSVGDEIEALVLQKEDKEGRLLLSKKRAQYERAWGTIERIK 120

Query: 558 ----IPPDQIRNV--------IGMGGKVIRGIVE-------------QTGAKVNIDDDGT 592
               +    +  V        IG+ G +   +VE             +  AK+   D   
Sbjct: 121 EEDGVVTGSVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180

Query: 593 VKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
             +  S  A +E  +  +R+      +  ++  G V  +++FGAFV   G  DGLVH+S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSE 239

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++  +
Sbjct: 240 LSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQ 285


>gi|238026536|ref|YP_002910767.1| 30S ribosomal protein S1 [Burkholderia glumae BGR1]
 gi|237875730|gb|ACR28063.1| Ribosomal protein S1 [Burkholderia glumae BGR1]
          Length = 576

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMVINIDRKSRGINLSIKAKD 538



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWS--ESGEEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|188579485|ref|YP_001922930.1| 30S ribosomal protein S1 [Methylobacterium populi BJ001]
 gi|179342983|gb|ACB78395.1| ribosomal protein S1 [Methylobacterium populi BJ001]
          Length = 570

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 102/254 (40%), Gaps = 25/254 (9%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           A  +  VP+ +       G +K GD+  +  D    E+ L            G   +  D
Sbjct: 52  AKTEGRVPLKEFTGPGREGELKVGDEVEVYVD--RIENAL------------GEAVISRD 97

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
                 S   +  A +  +R    I N++    +        F PR ++   P   +  +
Sbjct: 98  KARREESWVKLEKAFEANERVTGTIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPL 157

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           +G         +++          G + ++  ++ E   A +    + ++ E  ++  G 
Sbjct: 158 LGTPQPFQILKMDRRR--------GNIVVSRRTVLEESRAEQRSELVANLEEG-QVIDGV 208

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  + +  +I L
Sbjct: 209 VKNITEYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKINHETHRISL 267

Query: 686 SMKVVDQNTGKPIV 699
            +K +  +  + I 
Sbjct: 268 GIKQLLADPWEGIA 281



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I          KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 275 DPWEGIAARYPEGAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 335 SQEVEVQILEVDSVKRRISLGLKQTLQNPWE 365



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S +  +   +K+  I    +     
Sbjct: 207 GVVKNITEYGAFVDLGGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIK---INHETH 263

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L +  + ++    +  +   RV  +      +   +  G + +  + E + 
Sbjct: 264 RISLGIKQLLADPWEGIAARYPEGAKLKGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 321

Query: 583 AKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     +I                  +    +  +   V    +G+V
Sbjct: 322 TKKNVHPGKIVSTSQEVEVQILEVDSVKRRISLGLKQTLQNPWEAFAEKHPVGSEVEGEV 381

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L   R   +  +  K+GD V  ++LD D ++ +I L
Sbjct: 382 KNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISL 441

Query: 686 SMKVVDQNT 694
            +K +  + 
Sbjct: 442 GVKQLGGDP 450



 Score = 39.1 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +     +  ++   +VV+V D G  V          +  ++L+ +R  +  +    G+  
Sbjct: 452 AEAGEIKKGQVVTCEVVEVKDSGLEVKLVDTDMQTFIRRAELARDRGDQRPERFAAGEKF 511

Query: 671 WVKLLDFDDR-GKIKLSMKVVD 691
             +++ FD +  ++++S+K ++
Sbjct: 512 DARVIQFDRKARRVQVSIKALE 533


>gi|301605879|ref|XP_002932570.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Xenopus (Silurana)
           tropicalis]
          Length = 1150

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKT 660
             + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  
Sbjct: 211 KEKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANV 270

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +DVV +G  V VK+L F    K  LSMK V+Q+TG+ +
Sbjct: 271 ADVVSKGQRVKVKVLSFTGC-KTSLSMKDVNQDTGEDL 307


>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
 gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
          Length = 549

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   I   PP  +   IG          +    K+N++    V      + E  A
Sbjct: 118 VDAFLPASHIDIQPPKNLDQYIGQT-------YDYKVLKINLERKNIVLSRRELIEEQRA 170

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           ++   R + +      + KG V  + DFGAF+   G  DGL+HI+ +S  R++  S+++K
Sbjct: 171 SK--RRDLLERVNPGDVVKGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRISHPSEMLK 227

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +G+ + V +++ + ++ ++ L +K    N  + I
Sbjct: 228 QGEEIDVMIIEINREKERVSLGLKQTKSNPWQDI 261



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    I     +  +  G + K+  FGAFV      DGLVHISQ+S ERV K  DVV 
Sbjct: 428 ADDPWEDIDGRFRIGDVVSGTISKITSFGAFVELQDHIDGLVHISQISEERVEKIKDVVD 487

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            G  V  +++  D +  ++ LS+K  +
Sbjct: 488 IGTEVTARVIKIDREERRLGLSIKAAN 514



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
               +     V     G+V  +  +GAFV      DG+VH+S +S  R +   S+V+K+ 
Sbjct: 344 PWDMVVHNYPVGAHVHGKVRNITTYGAFVELEEGIDGMVHVSDMSWTRKINHPSEVLKKA 403

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D +   +LD D +  +I L MK +  +  + I
Sbjct: 404 DEIDAIVLDVDTNNQRISLGMKQLADDPWEDI 435



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 582 GAKVN--IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           G +++  I +    K   S   +   +          P   K+  G+VV ++ +GAF+  
Sbjct: 229 GEEIDVMIIEINREKERVSLGLKQTKSNPWQDIEAKYPVGAKV-AGKVVNLVPYGAFIEI 287

Query: 640 CGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKP 697
               +GLVH++++S  +R+ K S+++K GD V   +L    D  KI L ++ +D N    
Sbjct: 288 EEGVEGLVHVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNPWDM 347

Query: 698 IV 699
           +V
Sbjct: 348 VV 349


>gi|119572063|gb|EAW51678.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_c [Homo
           sapiens]
          Length = 1007

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|164658227|ref|XP_001730239.1| hypothetical protein MGL_2621 [Malassezia globosa CBS 7966]
 gi|159104134|gb|EDP43025.1| hypothetical protein MGL_2621 [Malassezia globosa CBS 7966]
          Length = 1152

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 12/94 (12%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTE--------RVAKTSDVVK 665
           P +NK+Y G+V  V DFGAFV      G RDGLVHIS L +         R++  SDVV 
Sbjct: 165 PVLNKVYYGRVSGVKDFGAFVTLDGVAGRRDGLVHISALCSNTARGGNTGRISHPSDVVS 224

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            GD V VK++    + +I LSM+ VDQ TG+ +V
Sbjct: 225 RGDHVKVKVISIAGQ-RIGLSMRDVDQVTGRDLV 257


>gi|297561854|ref|YP_003680828.1| Tex-like protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846302|gb|ADH68322.1| Tex-like protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 797

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 24/175 (13%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           + S V  E+   +     RV         + ++IG    + R   E+      +DD   +
Sbjct: 573 DASAVHPEAYPVVRRILDRVGT------DLPSLIGNKDLLSRVRPEEF-----VDDTFGL 621

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQVVKVMDFGAFVHFCG 641
              +  LAE++      R         +            + +G V  V  FGAFV    
Sbjct: 622 PTVTDILAELDKPGRDPRPAFTTATFKEGVEKLQDLTPGMLLEGVVTNVAAFGAFVDVGV 681

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +DGLVH+S LS + V    DVVK GD V VK+ D D  R +I L+M++ D+   
Sbjct: 682 HQDGLVHVSALSYKFVEDPRDVVKPGDIVKVKVQDVDIPRKRISLTMRLDDEAPA 736


>gi|269216208|ref|ZP_06160062.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122]
 gi|269130467|gb|EEZ61545.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122]
          Length = 399

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +   V  +  G+V K++ FGAFV      +GLVHIS+++  R+   + VVK G
Sbjct: 280 DPWIKLVESYPVGSVIDGKVTKIVPFGAFVELGSNVEGLVHISEMAPRRIETPAQVVKVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             V VK+++ + DR +I LSMK   +  G  I
Sbjct: 340 QEVKVKVMEVNPDRRRISLSMKAAAEELGIEI 371



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  + ++  +    +    E     + +D +   V ++   L E     E    ++ + +
Sbjct: 147 PASLVDLRRVKDLDMYLGTELEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLTK 206

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  ++DFGAFV   G  DGLVHIS+LS   V   S+VVK G  V V++LD D
Sbjct: 207 GMRL-KGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVEVLDVD 264

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
             R +I L +K    +    +V
Sbjct: 265 LSRERISLGLKQTTPDPWIKLV 286


>gi|161610761|ref|NP_879751.2| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
 gi|332381523|gb|AEE66370.1| 30S ribosomal protein S1 [Bordetella pertussis CS]
          Length = 571

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 76  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTN 135

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 136 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 187

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 188 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 246 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 277



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 275 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 334

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 335 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 366



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 343 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 398

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD +   +L  D ++ +I L +K ++ + 
Sbjct: 399 GLVHLSDLSWT--ESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQLEGDP 450



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G +  V   GA +      +G +  S++S+ RV   + V+K G
Sbjct: 449 DPFNNFVATHDKGAVVPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAG 508

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + +   +++ D + + I+LS+K  D
Sbjct: 509 ENIEAMIVNIDRKARSIQLSIKARD 533


>gi|261188658|ref|XP_002620743.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081]
 gi|239593101|gb|EEQ75682.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081]
          Length = 1213

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           R     + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD
Sbjct: 243 RPPTPELDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQDGARVNHPSD 302

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V +G  V VK+       +I LSMK VDQ TG+ + 
Sbjct: 303 LVSKGQPVKVKVNTI-QGARIGLSMKEVDQVTGRDLA 338


>gi|254582208|ref|XP_002497089.1| ZYRO0D15180p [Zygosaccharomyces rouxii]
 gi|238939981|emb|CAR28156.1| ZYRO0D15180p [Zygosaccharomyces rouxii]
          Length = 1103

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           P +NKIY G++  +  FG FV   G +    DGLVHIS+++  RV +  D+V+ G  V++
Sbjct: 178 PILNKIYPGRIKNITAFGCFVQIHGTQEKNSDGLVHISEMTNHRVRRPQDLVQLGQEVFI 237

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++     G + LSMK +DQ TG+ I 
Sbjct: 238 KVIKLQKNGNVSLSMKNIDQLTGQEIA 264


>gi|119192732|ref|XP_001246972.1| hypothetical protein CIMG_00743 [Coccidioides immitis RS]
          Length = 1215

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---D 644
           DD    +       +    R     + + P + K+Y G+V  + DFGAFV+  G R   D
Sbjct: 226 DDYKDRRGRRGRDDDDYFRRPPTPELDERPILYKVYDGRVTGIKDFGAFVNLQGVRGKVD 285

Query: 645 GLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
           GLVH+S +    RV   SD+V     V VK++    +G +I LSMK VDQ TG+ +V
Sbjct: 286 GLVHVSAMQDGARVNHPSDLVSRAQPVKVKVVSI--QGPRIGLSMKEVDQVTGRDLV 340


>gi|306836392|ref|ZP_07469370.1| YhgF like protein [Corynebacterium accolens ATCC 49726]
 gi|304567752|gb|EFM43339.1| YhgF like protein [Corynebacterium accolens ATCC 49726]
          Length = 774

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S + V+   +VV+ G  V VK+++ D D
Sbjct: 641 MVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSHQFVSDPHEVVRSGQVVKVKVMEVDVD 700

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I LS++ +D   G+P
Sbjct: 701 RQRIGLSLR-LDDEPGQP 717


>gi|240118974|ref|ZP_04733036.1| hypothetical protein NgonPID_11052 [Neisseria gonorrhoeae PID1]
 gi|268604688|ref|ZP_06138855.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1]
 gi|268588819|gb|EEZ53495.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1]
          Length = 757

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGIHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 716


>gi|238924000|ref|YP_002937516.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Eubacterium rectale ATCC 33656]
 gi|238875675|gb|ACR75382.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Eubacterium rectale ATCC 33656]
 gi|291524741|emb|CBK90328.1| Ribosomal protein S1 [Eubacterium rectale DSM 17629]
 gi|291528938|emb|CBK94524.1| Ribosomal protein S1 [Eubacterium rectale M104/1]
          Length = 371

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                T+      I KG+V ++ DFGAF+      D L+H+SQ+S + V K SDV+K G 
Sbjct: 266 PWNGATEKFAPGNIVKGKVARMTDFGAFIELAPGVDALLHVSQISKDHVEKPSDVLKIGQ 325

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV--DQNTGKPIV 699
            V  K+++F+ D  KI LSMK +   ++ G  + 
Sbjct: 326 EVEAKVVEFNEDDKKISLSMKALLDSEDDGADVA 359



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V     F++     DG++  ++ + E     + VVK G
Sbjct: 8   QMLEESFKTIRNGEVVEGTVIDVKPDEIFLNIGYKSDGIITRNEYTNEPNVDLTTVVKVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K++   D  G++ LS K +    G
Sbjct: 68  DKMEAKVVKLNDGEGQVILSYKRLQAEKG 96


>gi|330815897|ref|YP_004359602.1| 30S ribosomal protein S1 [Burkholderia gladioli BSR3]
 gi|327368290|gb|AEA59646.1| 30S ribosomal protein S1 [Burkholderia gladioli BSR3]
          Length = 576

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 113 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 169

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I  G V  + D+GAF
Sbjct: 170 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVNGVVKNITDYGAF 223

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 224 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 282

Query: 696 KPI 698
           + I
Sbjct: 283 EGI 285



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMVINIDRKSRGINLSIKAKD 538



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWS--ESGEEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|319638887|ref|ZP_07993645.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
 gi|317399791|gb|EFV80454.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
          Length = 757

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|253996885|ref|YP_003048949.1| 30S ribosomal protein S1 [Methylotenera mobilis JLW8]
 gi|253983564|gb|ACT48422.1| ribosomal protein S1 [Methylotenera mobilis JLW8]
          Length = 500

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 17/227 (7%)

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I+ DE      + +V   D     + ++    G    ++     + K  R+    ++   
Sbjct: 58  INADEFRNAQGELEVQVGD--FVKVAIEKLEDGFGSTVL----SREKAKRMETWLDLEDA 111

Query: 539 LSESRLQLGEFTPRVE---------IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           ++E R+  G  + +V+         IMA  P  + +V  +         E     + +D 
Sbjct: 112 MNEGRIIKGFVSGKVKGGLRVSVNGIMAFLPGSLVDVRPVKDTTPFENKECDLKVIKLDR 171

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
                + S       +A     ++        + KG V  + D+GAFV   G  DGL+HI
Sbjct: 172 KRNNIVVSRRAVMEVSAGADREALLGTLAEGAVVKGIVKNITDYGAFVDL-GGIDGLLHI 230

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + L+  RV   S+V+  G+ V  K+L FD ++ ++ L +K +  +  
Sbjct: 231 TDLAWRRVKHPSEVLTVGEEVEAKVLKFDQEKNRVSLGIKQLGDDPW 277



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++T    V+    G+V  + D+GAFV      +GLVH+S++    +      + + 
Sbjct: 275 DPWVALTRRYPVSTRLFGKVSNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNIHPGKIAQL 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R ++ L MK    N    
Sbjct: 335 GDEVEVMILEIDEARRRLSLGMKQCQANPWDD 366



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 93/258 (36%), Gaps = 34/258 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            +  G+VK+  D+    D+ G +   H+  + ++     S +  +  +++   +  +   
Sbjct: 203 AVVKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKVLKFDQ-- 260

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                    +  +   + ++  +  + L    P    +      + +      I  G + 
Sbjct: 261 --------EKNRVSLGIKQLGDDPWVALTRRYPVSTRLFGKVSNLTDYGAFVEIEPGIEG 312

Query: 574 IRGIVEQTGAKVNID--------DDGTVKIASSSLAEIEAAREMIRSITDVPEVN----- 620
           +  + E      NI         D+  V I     A    +  M +   +  +       
Sbjct: 313 LVHVSEMDWTNKNIHPGKIAQLGDEVEVMILEIDEARRRLSLGMKQCQANPWDDFSATHA 372

Query: 621 --KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDF 677
                 GQ+  + DFG F+   G  DGLVH+S LS  +   +     K+GD +   +L  
Sbjct: 373 KGDKVSGQIKSITDFGVFIGLPGGIDGLVHLSDLSWAQSGEEAIRNFKKGDELQAVILAI 432

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D ++ +I L +K +  + 
Sbjct: 433 DVEKERISLGVKQLTADP 450


>gi|163849636|ref|YP_001637679.1| 30S ribosomal protein S1 [Methylobacterium extorquens PA1]
 gi|240136835|ref|YP_002961302.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens AM1]
 gi|254558710|ref|YP_003065805.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens DM4]
 gi|163661241|gb|ABY28608.1| ribosomal protein S1 [Methylobacterium extorquens PA1]
 gi|240006799|gb|ACS38025.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens AM1]
 gi|254265988|emb|CAX21738.1| 30S ribosomal subunit protein S1 [Methylobacterium extorquens DM4]
          Length = 570

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 102/254 (40%), Gaps = 25/254 (9%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           A  +  VP+ +       G +K GD+  +  D    E+ L            G   +  D
Sbjct: 52  AKTEGRVPLKEFTGPGREGELKVGDEVEVYVD--RIENAL------------GEAVISRD 97

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
                 S   +  A +  +R    I N++    +        F PR ++   P   +  +
Sbjct: 98  KARREESWVKLEKAFEANERVTGTIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPL 157

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           +G         +++          G + ++  ++ E   A +    + ++ E  ++  G 
Sbjct: 158 LGTPQPFQILKMDRRR--------GNIVVSRRTVLEESRAEQRSELVANLEEG-QVIDGV 208

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  + +  +I L
Sbjct: 209 VKNITEYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKINHETHRISL 267

Query: 686 SMKVVDQNTGKPIV 699
            +K +  +  + I 
Sbjct: 268 GIKQLLADPWEGIA 281



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I          KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 275 DPWEGIAARYPEEAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V++L+ D  + +I L +K   QN  
Sbjct: 335 SQEVEVQILEVDSVKRRISLGLKQTLQNPW 364



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S +  +   +K+  I    +     
Sbjct: 207 GVVKNITEYGAFVDLGGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIK---INHETH 263

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L +  + ++    +  +   RV  +      +   +  G + +  + E + 
Sbjct: 264 RISLGIKQLLADPWEGIAARYPEEAKLKGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 321

Query: 583 AKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     +I                  +    +  +   V    +G+V
Sbjct: 322 TKKNVHPGKIVSTSQEVEVQILEVDSVKRRISLGLKQTLQNPWDAFAEKHPVGSEVEGEV 381

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L   R   +  +  K+GD V  ++LD D ++ +I L
Sbjct: 382 KNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISL 441

Query: 686 SMKVVDQNT 694
            +K +  + 
Sbjct: 442 GVKQLGGDP 450



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +     +  +I   +VV+V D G  V          +  ++L+ +R  +  +    G+  
Sbjct: 452 AEAGEVKKGQIVTCEVVEVKDSGLEVKLVDTDMQTFIRRAELARDRGDQRPERFAAGEKF 511

Query: 671 WVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
             +++ FD +  ++++S+K ++    K 
Sbjct: 512 DARVIQFDRKARRVQVSIKALEVAEEKE 539


>gi|298370332|ref|ZP_06981648.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281792|gb|EFI23281.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 757

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS   V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNRFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|157676014|emb|CAP07848.1| putative transcriptional accessory protein [Neisseria macacae]
          Length = 757

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|19114165|ref|NP_593253.1| ATP-dependent RNA helicase Prp22 [Schizosaccharomyces pombe 972h-]
 gi|3913431|sp|O42643|PRP22_SCHPO RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
           prp22
 gi|2661607|emb|CAA15715.1| ATP-dependent RNA helicase Prp22 [Schizosaccharomyces pombe]
          Length = 1168

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLS-TERVAKTSDVVKEGDTVWV 672
           P +  IY G V  + DFGAFV   G R   DGLVHIS +    R+   S+ V  G  V+V
Sbjct: 204 PTLYGIYSGVVSGIKDFGAFVTLDGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVFV 263

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           K++  D+   +I LSMK V+Q TG+ +
Sbjct: 264 KVIRIDESAKRISLSMKEVNQVTGEDL 290


>gi|161609266|ref|NP_890000.2| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
 gi|161610386|ref|NP_885303.2| 30S ribosomal protein S1 [Bordetella parapertussis 12822]
          Length = 571

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 76  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTN 135

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 136 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 187

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 188 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 246 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 277



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 275 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 334

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 335 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 366



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 343 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 398

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD +   +L  D D+ +I L +K ++ + 
Sbjct: 399 GLVHLSDLSWT--ESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQLEGDP 450



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G +  V   GA +      +G +  S++S+ RV   + V+K G
Sbjct: 449 DPFNNFVATHDKGAVVPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAG 508

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + +   +++ D + + I+LS+K  D
Sbjct: 509 ENIEAMIVNIDRKARSIQLSIKARD 533


>gi|134299017|ref|YP_001112513.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134051717|gb|ABO49688.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           reducens MI-1]
          Length = 672

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E + AR+    +  + E  +I KG V ++ +FGAFV   G  DGL+HIS+
Sbjct: 444 KVVVSRKAVLEEQNARKREELLASLQEG-QIVKGIVRRITNFGAFVDL-GGLDGLLHISE 501

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           +S  R+    +VVK GD + V +L  D +  KI L +K V  N    +
Sbjct: 502 MSWHRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVLPNPWDNV 549



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   V  I+  +VV++  FGAFV      +GLVHIS L+   V K  DVVKEG+
Sbjct: 545 PWDNVEEKYPVGNIFNAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVEKPEDVVKEGE 604

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVD 691
            V VK+L  D    +++LS++ V+
Sbjct: 605 EVQVKVLSMDPSEKRVRLSIREVN 628



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 564 RNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
             ++G+  G      I+E+   ++N  D       ++    +  A E        P+  +
Sbjct: 250 HEIVGLTAGASTPDAIIEEVKKRMNEMDQ-----MTNGEEGMSEAME-----VKSPQAGE 299

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDR 680
           + KG VV+V      V      +G++   +++   V    ++VK GD +   ++   D+ 
Sbjct: 300 LVKGIVVQVGMDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEIECVVIKAEDNE 359

Query: 681 GKIKLS 686
           GKI LS
Sbjct: 360 GKIILS 365



 Score = 44.5 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 23/199 (11%)

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNE------MSKVLSESRLQLGEFTPRVEI 555
             +MD    G  E  M  A++        ++        M +VL + R +     PR E+
Sbjct: 273 MNEMDQMTNG--EEGMSEAMEVKSPQAGELVKGIVVQVGMDEVLVDIRAKSEGVIPRKEM 330

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
                D ++ ++ +G        E     +  +D+    I S   A+ E A + +     
Sbjct: 331 AFYGVDNLQEIVKVGD-------EIECVVIKAEDNEGKIILSKERADAEKAWDGLEEAM- 382

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E   I KG V +V+  G  V         +  S +    V   S  +       V+++
Sbjct: 383 --EQGTIIKGVVREVVKGGMLVDV--GVRAFLPASLVERGYVEDLSKYLN--QEFEVRVI 436

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           + +  R K+ +S K V + 
Sbjct: 437 EMNKQRKKVVVSRKAVLEE 455


>gi|93006497|ref|YP_580934.1| 30S ribosomal protein S1 [Psychrobacter cryohalolentis K5]
 gi|92394175|gb|ABE75450.1| SSU ribosomal protein S1P [Psychrobacter cryohalolentis K5]
          Length = 563

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 11/213 (5%)

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
             +  +      G T +  +      + N +       +  +  I +++    +     +
Sbjct: 69  VDVVVEAVDNGMGQTLLSREKAKRVETWNFLEKISDNDEIVKGIISSKVKGGFTVDIGSV 128

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +    IR+   + GK +   V +   K N      V ++  ++ E E +
Sbjct: 129 RAFLPGSL---VDVRPIRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRAVMEAENS 180

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +  + E  +I +G V  + D+GAFV   G  DGL+HI+ ++  R+   S+VV+ 
Sbjct: 181 AEREELLNKLEEGIEI-EGIVKNLTDYGAFVDL-GGIDGLLHITDMAWRRIKHPSEVVEV 238

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  + VK+L FD +R ++ L +K +  +    +
Sbjct: 239 GQDLKVKVLKFDRERNRVSLGLKQLGTDPWDNV 271



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     V  + K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWDNVGGTYPVGSVVKARVTNLTDYGCFAEISEGIEGLVHVSEMDHTNKNIHPSKVVQV 325

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +LD D+ R +I L +K    N    
Sbjct: 326 GDEVEVMILDIDEERRRISLGIKQTLANPWDE 357



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V +V   GA +      +  +  S++  +RV   +  +  GD V  K++  D + 
Sbjct: 454 IVNGKVKEVDAKGATIELADEVEAYLRASEIQRDRVEDATKHLTVGDDVEAKIISVDRKT 513

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D+   +
Sbjct: 514 RNISLSIKAKDEAEER 529



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  ++      ++ID++                           
Sbjct: 317 IHPSKVVQV----GDEVEVMI------LDIDEERRRISLGIKQTLAN----PWDEFDKKH 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           E      G +  + DFG F+   G  DGLVH+S +S             +GDTV   +L 
Sbjct: 363 ERGDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEDAIRNYNKGDTVEAMVLS 422

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +  +I L +K +  + 
Sbjct: 423 VDSEANRISLGVKQLTSDP 441


>gi|238022458|ref|ZP_04602884.1| hypothetical protein GCWU000324_02366 [Kingella oralis ATCC 51147]
 gi|237867072|gb|EEP68114.1| hypothetical protein GCWU000324_02366 [Kingella oralis ATCC 51147]
          Length = 557

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 83/213 (38%), Gaps = 11/213 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  +          +  A++  +     I  ++   L+    
Sbjct: 65  DFVTVTIESVENGFGETKLSREKAKRAADWITLEEAMEDGEILSGVINGKVKGGLTVMVN 124

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P        G         VE    K++   +  V    + L    
Sbjct: 125 SIRAFLPGSLLDVRPIKDTSQFEGKE-------VEFKVIKLDRKRNNVVVSRRAVLEATL 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  +++ +  +   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 178 --GEERKALMETLQEGTIVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVL 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + G  V  K+L FD D+ ++ L +K + ++  +
Sbjct: 235 EVGKEVEAKVLRFDQDKQRVSLGLKQLGEDPWE 267



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 264 DPWEGLARRYPQGSRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQL 323

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +LD D D+ +I L MK    N  
Sbjct: 324 GDEVEVMILDIDEDKRRISLGMKQCQANPW 353



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D   K   S   +   A   +    +  + +K+ KG V  + DFG FV   G  D
Sbjct: 332 LDIDED---KRRISLGMKQCQANPWLEFEANYNKGDKL-KGTVKSITDFGVFVGLPGNID 387

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+G+ V   +L  D ++ +I L +K ++ + 
Sbjct: 388 GLVHLSDLSWT--ESGEEAVRKYKKGEEVETVVLAIDVEKERISLGIKQLEGDP 439



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +  +  S+ + +RV   +  + EGD V   +L  D + 
Sbjct: 452 LVKGTVKSVEAKGAVVALADEVEAYLPASEFAADRVEDLTTKLNEGDEVEAIILSVDRKN 511

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D+   + 
Sbjct: 512 RSIKLSIKAKDRKEDQD 528


>gi|160934395|ref|ZP_02081782.1| hypothetical protein CLOLEP_03268 [Clostridium leptum DSM 753]
 gi|156867068|gb|EDO60440.1| hypothetical protein CLOLEP_03268 [Clostridium leptum DSM 753]
          Length = 155

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 45/83 (54%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV  + +G+V  +  FGAF+   G + G+VHIS+++   V +  D V E  TV VK+
Sbjct: 1   MQLEVGMVLEGKVTGITKFGAFIELPGGKTGMVHISEVAPTFVKEIRDFVTENQTVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L   + GK+ LSMK       +P
Sbjct: 61  LSISEDGKVSLSMKKAMDPAPRP 83


>gi|85710776|ref|ZP_01041837.1| Transcriptional accessory protein [Idiomarina baltica OS145]
 gi|85695180|gb|EAQ33117.1| Transcriptional accessory protein [Idiomarina baltica OS145]
          Length = 768

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         E     +G V  V +FGAFV     +DG
Sbjct: 616 DIVRELEKPGRDPRPEFKTAQFKEGVEKVSDLEPGMTLEGVVTNVANFGAFVDIGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           LVHIS L+   V+   D+VK GD V V++++ D DR +I LSM+  DQ  
Sbjct: 676 LVHISALADTFVSDPRDIVKAGDIVTVRVVEVDIDRKRIGLSMRKDDQPA 725


>gi|71019705|ref|XP_760083.1| hypothetical protein UM03936.1 [Ustilago maydis 521]
 gi|46099848|gb|EAK85081.1| hypothetical protein UM03936.1 [Ustilago maydis 521]
          Length = 1201

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEG 667
           +  D P++ KIY+GQV  + DFG FV   G R   +G+VHI  ++   RV   SD++  G
Sbjct: 214 TPDDRPQLYKIYEGQVSNMRDFGVFVSLEGLRGRFEGMVHIGSIAAGTRVNHPSDLLSRG 273

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             V VK++      +I LSMK VDQ TG+ +
Sbjct: 274 QRVKVKVMSVVGD-RIGLSMKDVDQATGRDL 303


>gi|225077089|ref|ZP_03720288.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
           NRL30031/H210]
 gi|224951646|gb|EEG32855.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
           NRL30031/H210]
          Length = 761

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 609 LDILSELEKPGRDPRGEFQTASFAEGIREISDLQVGMILEGVVSNVANFGAFVDIGVHQD 668

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 669 GLVHISALSDKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 720


>gi|170050956|ref|XP_001861545.1| ATP-dependent RNA helicase DHX8 [Culex quinquefasciatus]
 gi|167872422|gb|EDS35805.1| ATP-dependent RNA helicase DHX8 [Culex quinquefasciatus]
          Length = 1253

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLSTE-RVAK 659
           +  R   R + + PE  +IY G+VV ++ FG FV        ++GLVHISQLS+E RV  
Sbjct: 265 QRKRTPPRQMPEEPEPGQIYNGRVVNIVAFGCFVQLTDFRRKKEGLVHISQLSSEGRVNT 324

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            +DVV   D V VK++      KI L MK VDQ +GK +
Sbjct: 325 VTDVVNRNDNVKVKVISIAGS-KISLCMKDVDQESGKDL 362


>gi|56459392|ref|YP_154673.1| transcriptional accessory protein [Idiomarina loihiensis L2TR]
 gi|56178402|gb|AAV81124.1| Transcriptional accessory protein [Idiomarina loihiensis L2TR]
          Length = 776

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   + +G V  V +FGAF+     +DG
Sbjct: 617 DILSELEKPGRDPRPEFKMAEFKEGVEKVSDLKPGMLLEGVVTNVANFGAFIDVGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           LVHIS L+ + V+   +VVK GD V VK+L+ D +R +I L+M++ D+   
Sbjct: 677 LVHISALADKFVSDPREVVKAGDIVKVKVLEVDIERKRIGLTMRLSDEAPA 727


>gi|52628762|gb|AAU27503.1| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 579

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +         E     + +D      + S      E +    +++ +    
Sbjct: 153 PGSLVDVRPVRDPSYLEGKELEFKVIKMDLKRNNIVVSRRAVVEEESSADRQALLESLHD 212

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +   G V  + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G  V VK+L FD 
Sbjct: 213 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 271

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L MK +  +    +V
Sbjct: 272 ERNRVSLGMKQLGNDPWVDLV 292



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 17/197 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M +        R  ++ E S    ++ L+       +  +          I +GG     
Sbjct: 180 MDLKRNNIVVSRRAVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLL 239

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNK 621
               +    V+     +++  D  VK+ S        +        +    + +   + K
Sbjct: 240 HITDISWKRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGK 299

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             +G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 300 RLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEE 359

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L MK    N  +
Sbjct: 360 RRRISLGMKQCVGNPWQ 376



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  V      V       G + +S+LS ERV   + +VK GD V  K+ + D + 
Sbjct: 474 IVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKN 533

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D       +
Sbjct: 534 RTISLSVKAKDAQDEADAI 552



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + +K     S + ++  D+K+  +S +       
Sbjct: 218 GIVKNLTDYGAFIDLGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFD------- 270

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
                R  +   M ++ ++  + L E  P  + +      I +      I  G + +  +
Sbjct: 271 ---SERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIEEGVEGLVHM 327

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E      N+     V +       +    E                 +         + 
Sbjct: 328 SEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNKGEK 387

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-D 679
            KG++  + DFG F+   G  DGLVH+S +S   V     V   K+G  +   +L  D +
Sbjct: 388 VKGKIRSITDFGIFIGLDGDIDGLVHLSDISWT-VPGEEAVKQFKKGQELEAVILAIDPE 446

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K ++ ++
Sbjct: 447 RERISLGLKQLEGDS 461


>gi|218528186|ref|YP_002419002.1| 30S ribosomal protein S1 [Methylobacterium chloromethanicum CM4]
 gi|218520489|gb|ACK81074.1| ribosomal protein S1 [Methylobacterium chloromethanicum CM4]
          Length = 570

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 102/254 (40%), Gaps = 25/254 (9%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           A  +  VP+ +       G +K GD+  +  D    E+ L            G   +  D
Sbjct: 52  AKTEGRVPLKEFTGPGREGELKVGDEVEVYVD--RIENAL------------GEAVISRD 97

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
                 S   +  A +  +R    I N++    +        F PR ++   P   +  +
Sbjct: 98  KARREESWVKLEKAFEANERVTGTIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPL 157

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           +G         +++          G + ++  ++ E   A +    + ++ E  ++  G 
Sbjct: 158 LGTPQPFQILKMDRRR--------GNIVVSRRTVLEESRAEQRSELVANLEEG-QVIDGV 208

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  + +  +I L
Sbjct: 209 VKNITEYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKINHETHRISL 267

Query: 686 SMKVVDQNTGKPIV 699
            +K +  +  + I 
Sbjct: 268 GIKQLLADPWEGIA 281



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I          KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 275 DPWEGIAARYPEEAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V++L+ D  + +I L +K   QN  
Sbjct: 335 SQEVEVQILEVDSVKRRISLGLKQTLQNPW 364



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S +  +   +K+  I    +     
Sbjct: 207 GVVKNITEYGAFVDLGGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIK---INHETH 263

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L +  + ++    +  +   RV  +      +   +  G + +  + E + 
Sbjct: 264 RISLGIKQLLADPWEGIAARYPEEAKLKGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 321

Query: 583 AKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     +I                  +    +  +   V    +G+V
Sbjct: 322 TKKNVHPGKIVSTSQEVEVQILEVDSVKRRISLGLKQTLQNPWDAFAEKHPVGSEVEGEV 381

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L   R   +  +  K+GD V  ++LD D ++ +I L
Sbjct: 382 KNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISL 441

Query: 686 SMKVVDQNT 694
            +K +  + 
Sbjct: 442 GVKQLGGDP 450



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +     +  +I   +VV+V D G  V          +  ++L+ +R  +  +    G+  
Sbjct: 452 AEAGEVKKGQIVTCEVVEVKDSGLEVKLVETDMQTFIRRAELARDRGDQRPERFAAGEKF 511

Query: 671 WVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
             +++ FD +  ++++S+K ++    K 
Sbjct: 512 DARVIQFDRKARRVQVSIKALEVAEEKE 539


>gi|153810812|ref|ZP_01963480.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174]
 gi|149833208|gb|EDM88290.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174]
          Length = 359

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 14/182 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------K 572
            ++    R  +L        +  ++       V             I +GG        +
Sbjct: 165 RRRIIGNRKQLLLAEKAEKQKELMEKIHVGDTVTGTVKNVTDFGAFIDLGGADGLLHISE 224

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQV 627
           +  G VE      N+ D+  V I   +  +I  + +       +          +  G+V
Sbjct: 225 MSWGRVENPKKVFNVGDEVRVLIKEINGDKIALSMKFPEENPWLSAAEDFAVGNVVTGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+ D  KI LS
Sbjct: 285 ARMTDFGAFVELAPGIDALLHVSQISKEHVAKPSDVLSIGQEIQAKVVDFNGDDKKISLS 344

Query: 687 MK 688
           MK
Sbjct: 345 MK 346



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I +G V+ V D    ++     DG++  S+ S +     +D V  G
Sbjct: 8   QMLEDSVKTIRNGEIVQGTVIDVKDDEIILNIGYKADGIITKSEYSNDASLVLTDAVHVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D++  K+L   D  G++ L+ K +    G
Sbjct: 68  DSMEAKVLKVNDGEGQVILTYKRLAAEKG 96


>gi|220930443|ref|YP_002507352.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
 gi|220000771|gb|ACL77372.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
          Length = 144

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV KI +G+V  +  FGAFV     + GLVHIS+++ E V   S  +KE   V VK+L  
Sbjct: 4   EVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQIVKVKILSV 63

Query: 678 DDRGKIKLSMK 688
           D  GK+ LS+K
Sbjct: 64  DTNGKVSLSIK 74


>gi|125975144|ref|YP_001039054.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|256003200|ref|ZP_05428192.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|281418435|ref|ZP_06249454.1| RNA binding S1 domain protein [Clostridium thermocellum JW20]
 gi|125715369|gb|ABN53861.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
 gi|255992891|gb|EEU02981.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|281407519|gb|EFB37778.1| RNA binding S1 domain protein [Clostridium thermocellum JW20]
 gi|316939311|gb|ADU73345.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 1313]
          Length = 140

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 44/74 (59%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + EV KI +G+V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+
Sbjct: 1   MLVEVGKIVEGRVSGITSFGAFVELSNGQTGLVHISEVADEYVKDIKSHLKENQTVKVKI 60

Query: 675 LDFDDRGKIKLSMK 688
           +  D  GKI LS+K
Sbjct: 61  ISVDKNGKISLSIK 74


>gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
 gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
          Length = 378

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   V +D +    I S      E   +   ++ +  +  ++ +G V ++ DFGAFV   
Sbjct: 149 TVKVVELDKEKNRVILSHRAVVEEELVQQKENVLESLKEGQVLEGTVQRLTDFGAFVDV- 207

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           G  DGLVHISQLS  RV K SDVV EGD V VK+L  D   G++ LS+K   +     I
Sbjct: 208 GGVDGLVHISQLSHTRVEKPSDVVAEGDAVKVKVLSVDKSTGRVSLSIKDTLEGPWSNI 266



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            +  G V +++ FGAFV      +GLVHISQ+S + +    +V+ EG+ V VK+LD +++
Sbjct: 274 DVVDGTVKRLVSFGAFVEVLPGVEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQ 333

Query: 681 -GKIKLSMKVVDQNTGKP 697
             ++ LS++ +++   + 
Sbjct: 334 ERRVSLSIRDLEEEEQED 351



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           +M +      EV +  KG + KV +   +V    ++ DG++ IS+L++  + K  DV++E
Sbjct: 4   DMNQVEVTSLEVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQE 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           G  V  K++  +D   + LS + VD  
Sbjct: 64  GAEVEAKVIKVEDDLLV-LSKRAVDAE 89


>gi|157375435|ref|YP_001474035.1| 30S ribosomal protein S1 [Shewanella sediminis HAW-EB3]
 gi|157317809|gb|ABV36907.1| ribosomal protein S1 [Shewanella sediminis HAW-EB3]
          Length = 555

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  A + A+     I  ++    +     +  F P      +    +R+   +  K + 
Sbjct: 97  VLEKAYEDAETVIGVINGKVKGGFTVELNGIRAFLPGSL---VDVRPVRDTAHLENKDLE 153

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             V +   K N      V ++  ++ E E++ E    + ++ E   + KG V  + D+GA
Sbjct: 154 FKVIKLDQKRN-----NVVVSRRAVIESESSAERDALLENLQEGQSV-KGIVKNLTDYGA 207

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R ++ L +K + ++ 
Sbjct: 208 FVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDP 266

Query: 695 GKPI 698
              I
Sbjct: 267 WLEI 270



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   S    ++ L+  +    V+ +          + +GG     
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQEGQSVKGIVKNLTDYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+  VK+          +        +    I+     N 
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENT 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +
Sbjct: 279 RLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEE 338

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N    
Sbjct: 339 RRRISLGLKQCKVNPWDD 356



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   G  +      +G + ++ +S ER+   S V   G
Sbjct: 439 DPFNAYLADKKKGTVVNGTVTAVDAKGVTIELADTVEGYLRVADISRERIEDASTVYSVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K +  D + + I LS++  D+   K 
Sbjct: 499 DAVESKFMGVDRKNRTISLSIRAKDEAEEKE 529



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++           ++           +  
Sbjct: 316 IHPSKVVNL----GDEVEVLV------LDIDEERRRISLGLKQCKVN----PWDDFAERF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +      G++  + DFG F+   G  DGLVH+S +S      +     K+GD +   +L 
Sbjct: 362 QKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVAEYKKGDEINAVVLS 421

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K  + + 
Sbjct: 422 VDPERERISLGVKQTEDDP 440


>gi|121713496|ref|XP_001274359.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           clavatus NRRL 1]
 gi|119402512|gb|EAW12933.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
           clavatus NRRL 1]
          Length = 1231

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           +     + D P + KIY G V  V DFGAFV+  G +   DGLVH+S +    RV   SD
Sbjct: 249 KPPPVELDDQPILYKIYDGVVTGVKDFGAFVNLKGVKGKVDGLVHVSAMLEGARVNHPSD 308

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++      +I LSMK VDQ TG  ++
Sbjct: 309 LVSRGQPVKVKVISIQGS-RIGLSMKEVDQVTGLDLI 344


>gi|297624806|ref|YP_003706240.1| RNA binding S1 domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297165986|gb|ADI15697.1| RNA binding S1 domain protein [Truepera radiovictrix DSM 17093]
          Length = 705

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   ++ ++    GK ++  + +   + N      +    S L E  A  E        
Sbjct: 245 QVDVRRVNDLSPYVGKRLKVRIIELNRRRN----RVIISRRSILEEELA--EQKAETLKK 298

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E     +G+VV++ DFGAFV+  G  DGLVH S+++  R     +V++ G  V V++LD
Sbjct: 299 LEPGARLEGEVVEITDFGAFVNL-GGIDGLVHRSEITHGRFNHPREVLEVGQKVKVEVLD 357

Query: 677 FD-DRGKIKLSMKVVDQNTGKPIV 699
            D +R +I LSMK +  +  + ++
Sbjct: 358 MDLERERINLSMKSLRADPWENVL 381



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             KV + D    +   +   +   A      + +     KI  G+V  +  FGAFV    
Sbjct: 350 KVKVEVLDMDLERERINLSMKSLRADPWENVLANYHIGQKI-SGKVTNLTPFGAFVEIEE 408

Query: 642 ARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             +GL+H+S++S  +RV    ++++EG  V   +L  D  + +I L M+    +  
Sbjct: 409 GLEGLIHVSEMSWTKRVRHPKELLEEGQEVEAMILKIDVQQQRISLGMRQTQPDPW 464



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S+ D         G +  + DFG F+      +GLVHIS+L+ E +   S+    G
Sbjct: 462 DPWSSLPDRYPPGTEVTGPITGLTDFGVFMEIEEGIEGLVHISELAHEHIEDISEHFSRG 521

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVV 690
           D +   +L+ D    +  LS K +
Sbjct: 522 DEITAVILNIDPVEQRASLSRKRL 545


>gi|295398966|ref|ZP_06808948.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978432|gb|EFG54028.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 387

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P  + +     GK +   V      V +D +    I S      E      +      
Sbjct: 137 VEPHYVEDFSDYKGKTLAVKV------VELDREKNRVILSHRAVVEEEQERQRKEALSRL 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ +G V ++ DFG FV   G  DGLVHISQLS  RVA  SDVV+EG+TV VK+L  
Sbjct: 191 ETGQVLEGIVRRITDFGVFVDVGGF-DGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSV 249

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D + G++ LS+K    +  + I 
Sbjct: 250 DEENGRVSLSIKEALPSPWEGIA 272



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    KV   D+   +++ S    +         I +      I  G+V +++ FGAFV 
Sbjct: 240 ETVKVKVLSVDEENGRVSLSIKEALP---SPWEGIAEKIAPGDIVTGKVKRLVPFGAFVE 296

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
                +GLVHISQ+ST+R+    +V+KEG+ V  K+LD  +   +I LS++ + +  
Sbjct: 297 IFPGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAERRISLSIRDLIEEE 353



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           E +    +V +V  I +G+V K+ D    V   G++  G++ IS+LS+  + KTSD V  
Sbjct: 3   EDMNLQVNVYKVGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSV 62

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD-QNTGKPI 698
           GD V  K+        ++ G + LS K VD +   + +
Sbjct: 63  GDEVTAKVKKVEEGENEEDGLLILSKKAVDAERAWEEL 100


>gi|134295079|ref|YP_001118814.1| 30S ribosomal protein S1 [Burkholderia vietnamiensis G4]
 gi|134138236|gb|ABO53979.1| SSU ribosomal protein S1P [Burkholderia vietnamiensis G4]
          Length = 576

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +   G  +G +  S++S +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMVINIDRKSRGINLSIKAKD 538



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|30249909|ref|NP_841979.1| 30S ribosomal protein S1 [Nitrosomonas europaea ATCC 19718]
 gi|30180946|emb|CAD85873.1| Ribosomal protein S1:S1 RNA binding domain [Nitrosomonas europaea
           ATCC 19718]
          Length = 572

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 11/219 (5%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +I   E     +  +      G T +  D      +   +  A+++ K     +  ++  
Sbjct: 68  EIEAREGDFVSVAIEALENGFGETRLSRDKAKRLNAWYELEEAMEKGKIVTGMVNGKVKG 127

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
            L+ +   +  F P   +   P   ++++     K +   V +   K N      V ++ 
Sbjct: 128 GLTATINGIRAFLPGSLVDIRP---VKDMTPYENKEMEFKVIKLDRKRN-----NVVVSR 179

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            ++ E     +    +  + +   + +G V  + D+GAFV   G  DGL+HI+ L+  RV
Sbjct: 180 RAVLEETQGADRDELLASLQDGA-VVQGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRV 237

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              ++V+  GD V  K+L FD ++ ++ L +K + ++  
Sbjct: 238 KHPTEVINVGDEVTAKVLKFDQEKNRVSLGLKQLTEDPW 276



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
              V+     +N+ D+ T K+      +   +        +    ++          G+V
Sbjct: 234 WRRVKHPTEVINVGDEVTAKVLKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQGTRIFGKV 293

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + D+GAFV      +GLVH+S++    +    S +V+ GD V V +L+ D DR +I L
Sbjct: 294 TNMTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKIVQLGDEVEVMILEIDEDRRRISL 353

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 354 GMKQCRPNPWEE 365



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                       +   E      GQ+  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCRPN----PWEEFSLSHEKGDKVTGQIKSITDFGLFIGLPGNID 397

Query: 645 GLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS  +   K     K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWNQPGEKAISEFKKGDEVEAVVLSIDVEKERISLGIKQLEGDP 449



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         + N I KG V  V   GA +      +G +  S+ S +++      V EG
Sbjct: 448 DPFNIYVASHDKNSIVKGTVKSVDAKGAVIALTDEVEGYLRASEFSRDKIEDIRSRVNEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           D +   +++ D + + I LS+K   Q+ 
Sbjct: 508 DEIEAMIINIDRKNRSISLSVKARIQDE 535


>gi|295116041|emb|CBL36888.1| Ribosomal protein S1 [butyrate-producing bacterium SM4/1]
          Length = 311

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++ D    + S      E  R   R   +  EV  + +G V  + D+GAFV       
Sbjct: 177 ITVEKDRKKLVLSGREVAREKERAEKRKKIEKCEVGAVMEGTVDTLKDYGAFVTLENGLS 236

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GLVHIS++S++R+     V+KEG TV VK++   D GKI LSMK  +    + +
Sbjct: 237 GLVHISRISSQRIKHPGVVLKEGQTVKVKIIGIKD-GKISLSMKDAEPEETEEV 289



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +  +     +   +    + + +     +   I  G V+ V D    V      +G++  
Sbjct: 8   EEKLNENMENAETMADYEKELEASFKKVKEGDILTGTVIGVTDSQVIVDLKYYAEGIIRR 67

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             ++ +      + +  GD +   ++  DD  G I LS K  +
Sbjct: 68  EDITDDPDYNMQEEIHVGDEISGTVIKTDDGEGNILLSRKSAN 110


>gi|291165668|gb|EFE27716.1| S1 RNA binding domain protein [Filifactor alocis ATCC 35896]
          Length = 718

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + +  G V  V+DFGAFV      DGLVHIS+LS + V    D+V+ GD V V+++  
Sbjct: 642 KEDMVLTGTVRNVLDFGAFVDIGLKSDGLVHISELSDKYVKHPLDIVRIGDIVTVRVIKI 701

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +RGK+ LSMK + Q+
Sbjct: 702 DRERGKVGLSMKQLPQH 718


>gi|325983541|ref|YP_004295943.1| 30S ribosomal protein S1 [Nitrosomonas sp. AL212]
 gi|325533060|gb|ADZ27781.1| ribosomal protein S1 [Nitrosomonas sp. AL212]
          Length = 570

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 88/212 (41%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      + + +  A++  K     +  ++   L+    
Sbjct: 76  DFISVAIESLEDGYGETRLSRDKAKRLTAWHDLEQAMESGKIVTGMVNGKVKGGLTAMIN 135

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++      K +   V +   K N      V ++  ++ E  
Sbjct: 136 GIRAFLPGSL---VDIRPVKDTTPYENKEMEFKVIKLDRKRN-----NVVVSRRAVLEAT 187

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              +    ++++ E   + +G V  + D+GAFV   G  DGL+HI+ L+  RV   S+VV
Sbjct: 188 QGADRETLLSNLQEGA-VVQGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVV 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             GD V  K+L FD ++ ++ L MK + ++  
Sbjct: 246 NIGDEVTAKVLKFDQEKNRVSLGMKQLSEDPW 277



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYKGQV 627
              V+     VNI D+ T K+               + + +    ++          G+V
Sbjct: 235 WRRVKHPSEVVNIGDEVTAKVLKFDQEKNRVSLGMKQLSEDPWVGLSRRYPARTRLFGKV 294

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
             + D+GAF+      +GLVH+S++    +    S +V+ GD V V +L+ D+ R +I L
Sbjct: 295 TNLTDYGAFIEIEQGIEGLVHVSEMDWTNKNVYPSKIVQLGDEVEVMILEIDEERRRISL 354

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 355 GMKQCQTNPWEE 366



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +               + N   +GQ+  + DFG F+   G  D
Sbjct: 343 LEIDEERRRISLGMKQCQTN----PWEEFAATHDKNAKVRGQIKSITDFGVFIGLPGNID 398

Query: 645 GLVHISQLSTERVAKTSDVV--KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS  +  +   V+  K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 399 GLVHLSDLSWNQPGE-EAVLNYKKGDEVEAMILSIDVERERISLGIKQMEGDP 450



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S     + N I  G V  +   GA +      +G +  S++S +RV      +KEG
Sbjct: 449 DPFTSFVAENDKNSIVTGTVKSIDPKGAVIALTHDIEGYLRASEVSRDRVEDIRTFLKEG 508

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQN 693
           DT+   +++ D + + I LS+K  D++
Sbjct: 509 DTIETMIINVDRKNRTINLSIKAKDKS 535


>gi|229918700|ref|YP_002887346.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229470129|gb|ACQ71901.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 382

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   V ID +    I S      E          +  EV ++ +G V ++ DFGAFV   
Sbjct: 148 TVKVVEIDREKNRVILSHKAVVEEEMSAKKSETLESLEVGQVIEGTVQRLTDFGAFVDI- 206

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  DGLVHIS+++  RV K SDVV EGD V VK+L  D D  K+KLS+K       + I
Sbjct: 207 GGVDGLVHISEMAHSRVEKPSDVVTEGDRVKVKVLGLDLDNEKVKLSIKETQPGPWETI 265



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I    +   + +G V +++ FGAFV      +GL+HISQ++   +A  S+V+ EG 
Sbjct: 261 PWETIEGKIQPGDVIEGTVKRLVTFGAFVEVAPQVEGLLHISQIANRHIATPSEVLSEGQ 320

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVD 691
            V VK+LD   D  KI LSM+ ++
Sbjct: 321 EVKVKVLDVHLDDKKISLSMRALE 344



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM           +I  G VVK+ D  A +      + ++ IS++S+  +   ++ ++  
Sbjct: 4   EMKDMPDFEINRGQIVTGTVVKIEDKQALIDIGYKTEAILPISEVSSMHLDDLNESLQVN 63

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D + VK+    D   + +S K VD    
Sbjct: 64  DEIRVKVKKVTDEE-VVVSKKDVDAEAA 90



 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIE---- 604
           + I   Q    IG   + I  I E +   ++       ++D+  VK+   +  E+     
Sbjct: 24  VKIEDKQALIDIGYKTEAILPISEVSSMHLDDLNESLQVNDEIRVKVKKVTDEEVVVSKK 83

Query: 605 --AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
              A      I +  E  ++++  V   +  G  V       G +  S + +  V   S 
Sbjct: 84  DVDAEAAWDRIVEKFESGEVFEVMVKDKVKGGLVVDI--GIRGFIPASLVESHFVEDFSS 141

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            +   + + VK+++ D ++ ++ LS K V +  
Sbjct: 142 YLN--NPITVKVVEIDREKNRVILSHKAVVEEE 172


>gi|170698415|ref|ZP_02889488.1| ribosomal protein S1 [Burkholderia ambifaria IOP40-10]
 gi|172059982|ref|YP_001807634.1| 30S ribosomal protein S1 [Burkholderia ambifaria MC40-6]
 gi|170136668|gb|EDT04923.1| ribosomal protein S1 [Burkholderia ambifaria IOP40-10]
 gi|171992499|gb|ACB63418.1| ribosomal protein S1 [Burkholderia ambifaria MC40-6]
          Length = 576

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +   G  +G +  S++S +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMVINIDRKSRGINLSIKAKD 538



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|160872757|ref|ZP_02062889.1| ribosomal protein S1 [Rickettsiella grylli]
 gi|159121556|gb|EDP46894.1| ribosomal protein S1 [Rickettsiella grylli]
          Length = 522

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 90/226 (39%), Gaps = 3/226 (1%)

Query: 476 LSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           L  I    +  G ++  V       I +++       +S      A   A   R H  + 
Sbjct: 47  LIPIEQFYNEAGELEVSVGDQVDVSIESLEDGFGETRLSREKAKRAEMWAALQRAHDADT 106

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           +       +++ G       + A  P  + +V  +    I    +     + +D      
Sbjct: 107 LVTGKVTGKVKGGFTVEIGSLRAFLPGSLVDVRPIRDSSIIEGKDLEFKVIKLDPKRNNI 166

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           + S         +     +    E  ++ KG V  + D+GAF+   G  DGL+H++ +S 
Sbjct: 167 VLSRRAVLESEGQAGREQLLTELEEGQVIKGIVKNLADYGAFIDL-GGIDGLLHVTDISW 225

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +RV + S+V+  GD + V +L  + +RG++ L +K +  +  + +V
Sbjct: 226 KRVKQPSEVLNIGDEIEVVVLKIERERGRVSLGLKQLVGDPWEDLV 271



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 15/195 (7%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   ++ +  QA R +L    E  +V+      L ++        I    I  ++ +  
Sbjct: 168 LSRRAVLESEGQAGREQLLTELEEGQVIKGIVKNLADYGA-----FIDLGGIDGLLHVTD 222

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYK 624
                 V+Q    +NI D+  V +          +        +    +     V    K
Sbjct: 223 IS-WKRVKQPSEVLNIGDEIEVVVLKIERERGRVSLGLKQLVGDPWEDLVKRYPVGTRLK 281

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  V D+G FV      +GLVH+S++    +    + +V+ G  + V +LD D DR +
Sbjct: 282 GKVTNVTDYGCFVEIEEGVEGLVHVSEMDWTNKNINPNKIVQAGMEIEVIVLDIDSDRRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 342 ISLGIKQCKSNPWED 356



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P++I       G  I  IV      ++ID D           +               
Sbjct: 316 INPNKIVQ----AGMEIEVIV------LDIDSDRRRISLGIKQCKSN----PWEDFAHTH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
              +   G++  + DFG F+   G  DGLVH+S ++        + V   K+GD +   +
Sbjct: 362 VKGERITGKIKSITDFGLFIGLPGNIDGLVHLSDIAWN--LSGEEAVRKYKKGDELETII 419

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKP 697
           L  D +R +I L +K +D  +  P
Sbjct: 420 LSIDPERERISLGIKQLDTESSHP 443



 Score = 44.1 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++  KG+++++ D G  V      +  + +++   E         + G  +  K+L  D 
Sbjct: 450 DQRVKGKIIEINDEGMKVDLGNHVEAQLKVAEYGEE-----GKNFEIGQEIEAKILSLDR 504

Query: 680 RGK-IKLSMKVVDQNTGK 696
           +   I LS+  +++ T +
Sbjct: 505 KNHYISLSLLALEEKTAQ 522


>gi|77966377|gb|ABB07757.1| SSU ribosomal protein S1P [Burkholderia sp. 383]
          Length = 576

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMVINIDRKSRGINLSIKAKD 538



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|115350977|ref|YP_772816.1| 30S ribosomal protein S1 [Burkholderia ambifaria AMMD]
 gi|171316178|ref|ZP_02905402.1| ribosomal protein S1 [Burkholderia ambifaria MEX-5]
 gi|115280965|gb|ABI86482.1| SSU ribosomal protein S1P [Burkholderia ambifaria AMMD]
 gi|171098687|gb|EDT43482.1| ribosomal protein S1 [Burkholderia ambifaria MEX-5]
          Length = 576

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +   G  +G +  S++S +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMVINIDRKSRGINLSIKAKD 538



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|327299420|ref|XP_003234403.1| ATP-dependent RNA helicase DHX8 [Trichophyton rubrum CBS 118892]
 gi|326463297|gb|EGD88750.1| ATP-dependent RNA helicase DHX8 [Trichophyton rubrum CBS 118892]
          Length = 1214

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           R     + D P + KIY G+V  + DFG FV+  G R   DGLVH+S +    RV   SD
Sbjct: 232 RPPASELDDRPILFKIYDGRVTGIKDFGVFVNLQGVRGRVDGLVHVSAMQEGARVNHPSD 291

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V  G  V VK++   D  +I LSMK VDQ +G  + 
Sbjct: 292 LVSRGQQVKVKIVSIQDS-RIGLSMKEVDQVSGHDLA 327


>gi|323701593|ref|ZP_08113265.1| RNA binding S1 domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323533366|gb|EGB23233.1| RNA binding S1 domain protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 129

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + +FGAFV   G   GLVHIS+++   V   ++ +K  D V VK++  
Sbjct: 4   EQGSIVEGVVTGITNFGAFVELPGGLTGLVHISEVAEVYVKDINEFLKVNDKVRVKVIAI 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D +GKI LS+K  + + 
Sbjct: 64  DPKGKIGLSLKQANPSA 80


>gi|256750897|ref|ZP_05491781.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750232|gb|EEU63252.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 712

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +      G V  V DFG FV      DGLVHIS++S   +    DVV  GD V 
Sbjct: 635 MTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVK 694

Query: 672 VKLLDFD-DRGKIKLSMK 688
           VK+L  D +R +I LSMK
Sbjct: 695 VKVLSVDIERNRISLSMK 712


>gi|261379513|ref|ZP_05984086.1| protein YhgF [Neisseria subflava NJ9703]
 gi|284797976|gb|EFC53323.1| protein YhgF [Neisseria subflava NJ9703]
          Length = 757

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGG 716


>gi|168183009|ref|ZP_02617673.1| putative 30S ribosomal protein S1 [Clostridium botulinum Bf]
 gi|182673872|gb|EDT85833.1| putative 30S ribosomal protein S1 [Clostridium botulinum Bf]
          Length = 387

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G++++ 
Sbjct: 104 LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKGEIVK- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + +   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKVVLSSRVVKEKEEAKRKEELWNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD +  KI LS+K V +N  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKKTKKIALSLKDVKKNPW 273



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       +    +  D   V  + +G V
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKKTKKIALSLKDVKKNPWNTAKDKYTVGSVVEGIV 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVEKGIEGLVHISEIADENIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQ 692
           +K   +
Sbjct: 351 IKEATE 356



 Score = 41.8 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|116689070|ref|YP_834693.1| 30S ribosomal protein S1 [Burkholderia cenocepacia HI2424]
 gi|170732358|ref|YP_001764305.1| 30S ribosomal protein S1 [Burkholderia cenocepacia MC0-3]
 gi|105892314|gb|ABF75479.1| SSU ribosomal protein S1P [Burkholderia cenocepacia AU 1054]
 gi|116647159|gb|ABK07800.1| SSU ribosomal protein S1P [Burkholderia cenocepacia HI2424]
 gi|169815600|gb|ACA90183.1| ribosomal protein S1 [Burkholderia cenocepacia MC0-3]
          Length = 576

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 151 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 205

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 206 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 263

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 264 DQEKNRVSLGIKQLGDDPWEGI 285



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 280 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 340 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 371



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 454 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEG 513

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 514 DKVNAMVINIDRKSRGINLSIKAKD 538



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 455


>gi|172056093|ref|YP_001812553.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171988614|gb|ACB59536.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 176

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   +DV+  G  + VK+L  
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPTGKTGLVHISEVADSYVKDINDVLTVGQEITVKVLSV 63

Query: 678 DDRGKIKLSM-KVVDQNTGK 696
           ++ GKI LS+ K VD+  G+
Sbjct: 64  ENDGKIGLSIKKAVDRPEGE 83


>gi|296236363|ref|XP_002763291.1| PREDICTED: nucleolar protein of 40 kDa-like [Callithrix jacchus]
          Length = 241

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++  +P +  I+ G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMEKLPALYTIFHGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D VWVKL+     +DR  + LSMKVV+Q TGK +
Sbjct: 65  DKVWVKLIGREMKNDRITVSLSMKVVNQGTGKDL 98


>gi|195978262|ref|YP_002123506.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974967|gb|ACG62493.1| SSU ribosomal protein Rps1 [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 400

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D++  G 
Sbjct: 268 PWDGVEQKLAQGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDMLTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+LD +    ++ LS+K +++   +
Sbjct: 328 EVTVKVLDVNAADERVSLSIKALEERPAQ 356



 Score = 37.6 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++   +  + +  G  V F G R G +  S + T  V  T   V  G     K+ + D  
Sbjct: 108 EVVTVKGTRAVKGGLSVEFEGLR-GFIPASMIDTRFVRNTEKFV--GQEFDAKIKEVDAA 164

Query: 680 RGKIKLSMKVVDQNTGK 696
             +  LS + V +   K
Sbjct: 165 ENRFILSRREVVEEAAK 181


>gi|239606255|gb|EEQ83242.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ER-3]
 gi|327355965|gb|EGE84822.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 1225

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           R     + D P + KIY G+V  + DFGAFV+  G +   DGLVH+S +    RV   SD
Sbjct: 243 RPPTPELDDQPILFKIYDGRVTGIKDFGAFVNLLGVKGKVDGLVHVSAMQDGARVNHPSD 302

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V +G  V VK+       +I LSMK VDQ TG+ + 
Sbjct: 303 LVSKGQPVKVKVNTI-QGARIGLSMKEVDQVTGRDLA 338


>gi|161611256|ref|YP_296774.2| 30S ribosomal protein S1 [Ralstonia eutropha JMP134]
          Length = 564

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 141 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 195

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 196 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 254 DQEKNRVSLGVKQLGEDPW 272



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 287 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 346

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 347 ISLGMKQCKANPWDD 361



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +           +   +      GQ+  + DFG F+   G  D
Sbjct: 338 LDIDEDKRRISLGMKQCKAN----PWDDFSRNHKKGDKLSGQIKSITDFGVFIGLPGGID 393

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 394 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSGDP 445



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G +  V   GA V      +G +  S++S +RV    +V+KEG+ +   +++ D + 
Sbjct: 458 LVTGTIKAVDPKGAVVQLADDVEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKS 517

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 518 RNINLSIKAKD 528


>gi|254362451|ref|ZP_04978560.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
 gi|153094040|gb|EDN74956.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
          Length = 774

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ 
Sbjct: 651 KAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDVVKVKVLEV 710

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M++ D+ T K
Sbjct: 711 DAARKRIALTMRLDDKPTDK 730


>gi|83745880|ref|ZP_00942937.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
            solanacearum UW551]
 gi|83727570|gb|EAP74691.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
            solanacearum UW551]
          Length = 1257

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 14/172 (8%)

Query: 534  EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI-RGIVEQTGAK------VN 586
            + S V  E+   +     RV         I +V+G    +      E T  K      V+
Sbjct: 1054 DRSSVHPEAYPVVQRILERV------KKGIGDVLGNREALRGLTAQEFTDDKFGLPTVVD 1107

Query: 587  IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            I  +              A  +         +   + +G V  V  FGAF+     +DGL
Sbjct: 1108 ILGELEKPGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVAAFGAFIDIGVHQDGL 1167

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+    P
Sbjct: 1168 VHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLTDEPGQAP 1219


>gi|283797557|ref|ZP_06346710.1| putative SSU ribosomal protein S1P [Clostridium sp. M62/1]
 gi|291074928|gb|EFE12292.1| putative SSU ribosomal protein S1P [Clostridium sp. M62/1]
 gi|295090842|emb|CBK76949.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10]
          Length = 311

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++ D    + S      E  R   R   +  EV  + +G V  + D+GAFV       
Sbjct: 177 ITVEKDRKKLVLSGREVAREKERAEKRKKIEKCEVGAVMEGTVDTLKDYGAFVTLENGLS 236

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GLVHIS++S++R+     V+KEG TV VK++   D GKI LSMK  +    + +
Sbjct: 237 GLVHISRISSQRIKHPGVVLKEGQTVKVKIIGIKD-GKISLSMKDAEPEETEEV 289



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +  +     +   +    + + +     +   I  G V+ V D    V      +G++  
Sbjct: 8   EEKLNENMENAETMADYEKELEASFKKVKEGDILTGTVIGVTDSQVIVDLKYYAEGIIRR 67

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             ++ +      + +  GD +   ++  DD  G I LS K  +
Sbjct: 68  EDITDDPDYNMQEEIHVGDEISGTVIKADDGEGNILLSRKSAN 110


>gi|194288913|ref|YP_002004820.1| 30S ribosomal protein s1 [Cupriavidus taiwanensis LMG 19424]
 gi|193222748|emb|CAQ68751.1| 30S ribosomal subunit protein S1 [Cupriavidus taiwanensis LMG
           19424]
          Length = 564

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 141 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 195

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 196 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 254 DQEKNRVSLGVKQLGEDPW 272



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 287 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 346

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 347 ISLGMKQCKANPWDD 361



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +           +   +      GQ+  + DFG F+   G  D
Sbjct: 338 LDIDEDKRRISLGMKQCKAN----PWDDFSRNHKKGDKLSGQIKSITDFGVFIGLPGGID 393

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 394 GLVHLSDLSWQ--ESGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSGDP 445



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G +  V   GA V      +G +  S++S +RV    +V+KEG+ +   +++ D + 
Sbjct: 458 LVQGTIKAVDAKGAVVQLADDVEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKS 517

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 518 RNINLSIKAKD 528


>gi|167771538|ref|ZP_02443591.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM
           17241]
 gi|167666178|gb|EDS10308.1| hypothetical protein ANACOL_02908 [Anaerotruncus colihominis DSM
           17241]
          Length = 662

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIE-------AAREMIRSITDVPEVNKIYKGQV 627
              ++     VN+ D   V I        +       A       +     V  +   +V
Sbjct: 510 WHRIKHPSEVVNVGDTVDVYIKDIDAENKKISLGFKKAEDNPWEIMKKDYAVGTVCTVKV 569

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           V +  FGAF       DGL+HISQ+S ERV K SDV+  G  V VK+ + D ++ ++ LS
Sbjct: 570 VSMTPFGAFAQIIPGIDGLIHISQISNERVNKPSDVLSIGQEVEVKITELDTEKKRVSLS 629

Query: 687 MKVVDQN 693
           ++ ++++
Sbjct: 630 IRALNED 636



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E+        E+ + Y G V  +  +GAFV+  G  DG+VHIS+LS  R+   S+VV  
Sbjct: 464 KELEDKFWQEVEIGRHYTGVVKSLTSYGAFVNL-GGVDGMVHISELSWHRIKHPSEVVNV 522

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GDTV V + D D +  KI L  K  + N  +
Sbjct: 523 GDTVDVYIKDIDAENKKISLGFKKAEDNPWE 553



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM+       +  +     V  +      V       G V +S+L+ +  AK  D+VK G
Sbjct: 291 EMLNQSFKTIDNREKVTAVVTGIAPNEISVDIGTKHAGYVPLSELTDDPNAKPEDLVKVG 350

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           DT+ + ++  +D  G + LS K +D   G
Sbjct: 351 DTLDLLVVRVNDVEGTVMLSKKRLDAIAG 379


>gi|94309667|ref|YP_582877.1| 30S ribosomal protein S1 [Cupriavidus metallidurans CH34]
 gi|93353519|gb|ABF07608.1| 30S ribosomal subunit protein S1 [Cupriavidus metallidurans CH34]
          Length = 564

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 141 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 195

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 196 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 254 DQEKNRVSLGVKQLGEDPW 272



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 287 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 346

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 347 ISLGMKQCKANPWDD 361



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +           +   +      GQ+  + DFG F+   G  D
Sbjct: 338 LDIDEDKRRISLGMKQCKAN----PWDDFSRNHKKGDKLTGQIKSITDFGVFIGLPGGID 393

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 394 GLVHLSDLSWQ--ESGEEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSGDP 445



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G +  V   GA V      +G +  S++S +RV    +V+KEG+ +   +++ D + 
Sbjct: 458 LVNGTIKAVDAKGAVVQLADDVEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKS 517

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 518 RNINLSIKAKD 528


>gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 484

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     V K G
Sbjct: 282 DPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V+VK++D D +R +I LS+K  ++
Sbjct: 342 DEVFVKVIDIDLERRRISLSLKQANE 367



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 39/286 (13%)

Query: 449 MDAGVPISKPVAGIAMGLVKD-----GDDFIILSDISGDEDHLGHMD-----FKVAGTDS 498
           M    P   PVA   +G  ++      +      D    E  +  +D       +     
Sbjct: 1   MTTTTPSPAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTE 60

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL-SESRLQLGEFTPRVEIMA 557
           G+   +       +  + +V    + +   L   ++  ++L S+ R Q       +E + 
Sbjct: 61  GVILARELSIKHDVDPDEIVSVGDEIEALVLQKEDKEGRLLLSKKRAQYERAWGTIERIK 120

Query: 558 ----IPPDQIRNV--------IGMGGKVIRGIVE-------------QTGAKVNIDDDGT 592
               +    +  V        IG+ G +   +VE             +  AK+   D   
Sbjct: 121 EEDGVVTGSVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180

Query: 593 VKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
             +  S  A +E  +  +R+      +  ++  G V  +++FGAFV   G  DGLVH+S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSE 239

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++  +
Sbjct: 240 LSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQ 285


>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
 gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
          Length = 383

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I  G+V ++ +FGAFV   G  DGLVHIS+L+  RV   S+VVKEGD V VK+
Sbjct: 184 HRLQPGDIITGKVQRLTNFGAFVDV-GGVDGLVHISELAWHRVEHPSEVVKEGDEVTVKV 242

Query: 675 LDFD-DRGKIKLSMKVVDQNTG 695
           L  D +R ++ LS+K  +    
Sbjct: 243 LKVDPERERVSLSIKEANPGPW 264



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLA------EIEAAREMIRSITDV-PEVNKIYKGQV 627
              VE     V   D+ TVK+             I+ A     S       V  +  G V
Sbjct: 222 WHRVEHPSEVVKEGDEVTVKVLKVDPERERVSLSIKEANPGPWSGVSERYHVGDVVTGTV 281

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLS 686
            +++ FGAFV      +GLVHISQ++  R+    +V++ G  V VK+LD ++   +I LS
Sbjct: 282 RRLVSFGAFVELEPGVEGLVHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLS 341

Query: 687 MKVVDQN 693
           ++  + +
Sbjct: 342 IREAEGD 348



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 607 REMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + +R +TD+  ++K  + KG++ K+ D   FV      DG++ I +LS  RV   SDVV
Sbjct: 1   MDEMRDMTDLVALHKGDVVKGRITKIEDGQVFVDVGYKFDGVIPIGELSALRVESPSDVV 60

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           + GD V V++    D+ GK+ LS K VD  
Sbjct: 61  QVGDEVEVRVQRINDEEGKLVLSKKAVDAE 90


>gi|237794446|ref|YP_002861998.1| ribosomal protein S1 [Clostridium botulinum Ba4 str. 657]
 gi|229261852|gb|ACQ52885.1| ribosomal protein S1 [Clostridium botulinum Ba4 str. 657]
          Length = 387

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G++++ 
Sbjct: 104 LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKGEIVK- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + +   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKVVLSSRVVKEKEEAKRKEELWNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD +  KI LS+K V +N  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKKTKKIALSLKDVKKNPW 273



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       +    +  D   V  + +G V
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKKTKKIALSLKDVKKNPWNTAKDKYTVGSVVEGIV 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVEKGIEGLVHISEIADENIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 351 IKEATEKVKED 361



 Score = 41.4 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|254481001|ref|ZP_05094247.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038796|gb|EEB79457.1| S1 RNA binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 772

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + + +G V  V +FGAF+     +DGLVHIS L+ + V    DVVK GD V VK+++ D 
Sbjct: 651 DMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRVKVMEVDA 710

Query: 679 DRGKIKLSMKVVDQ 692
            R +I LSM++ D+
Sbjct: 711 PRKRIGLSMRLSDK 724


>gi|302522933|ref|ZP_07275275.1| LOW QUALITY PROTEIN: transcription accessory protein [Streptomyces
           sp. SPB78]
 gi|302431828|gb|EFL03644.1| LOW QUALITY PROTEIN: transcription accessory protein [Streptomyces
           sp. SPB78]
          Length = 749

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK GD V VK+LD 
Sbjct: 647 EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKVKVLDV 706

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I L++++ D+
Sbjct: 707 DLPRKRISLTLRLDDE 722


>gi|302023682|ref|ZP_07248893.1| 30S ribosomal protein S1 [Streptococcus suis 05HAS68]
          Length = 156

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFGAFV      DGLVHISQ+S +RV    D +  G 
Sbjct: 23  PWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQ 82

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ +    ++ LS+K +++   
Sbjct: 83  EVTVKVLEVNAADERVSLSIKALEERPA 110


>gi|300117474|ref|ZP_07055264.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
 gi|298725309|gb|EFI65961.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
          Length = 382

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 246 DADTQRISLSIKAAQPGPWENI 267



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +I    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENIGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEENDLV-LSKRAVDAE 90


>gi|41582344|gb|AAS07958.1| S1 RNA binding domain protein [uncultured marine bacterium 463]
          Length = 772

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + + +G V  V +FGAF+     +DGLVHIS L+ + V    DVVK GD V VK+++ D 
Sbjct: 651 DMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRVKVMEVDA 710

Query: 679 DRGKIKLSMKVVDQ 692
            R +I LSM++ D+
Sbjct: 711 PRKRIGLSMRLSDK 724


>gi|282889926|ref|ZP_06298461.1| hypothetical protein pah_c008o002 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500119|gb|EFB42403.1| hypothetical protein pah_c008o002 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 751

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 123/371 (33%), Gaps = 64/371 (17%)

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMM----HYNFLPCATGEVSRMGAPS-----RRE 398
           AI   T G   +      LS   +   ++           +  +V+R   P      R  
Sbjct: 378 AIGNGTGGRETEAFVRKILSDHGKGSVLVISVSEAGASVYSASDVAREEFPDLDLTVRGA 437

Query: 399 IGHGRLARRAIHPVLPQTAQ----FPYTLRIVSEITESDGSSSM-ATVCGSSLALMDAGV 453
           I   R  +  +  ++    +      Y   +  ++     S  + + V    + L  A  
Sbjct: 438 ISIARRLQDPLAELVKVDPKAIGVGQYQHDVYQQLLHDQLSQVVESCVNHVGVELNTASA 497

Query: 454 PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           P+   V+GI   +      +         E                    Q  + + G+ 
Sbjct: 498 PLLSYVSGIGASVATKIVKYR--------EQFGA------------FKKRQQLLSVPGLG 537

Query: 514 ENIMVMAL--------------QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
                 A                     R  ++ +M++ L     +L      V+ + + 
Sbjct: 538 PRTFEQAAGFLRVRGGEHPLDASAVHPERYSLVEQMAQDLQIPLNELCSNVNLVKQIDL- 596

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPE 618
             +      +G   ++ IVE+             K      A  E+A+     +T    +
Sbjct: 597 --KRYVTDQVGLPTLQDIVEELK-----------KPGRDPRASFESAKFREDVLTLQDLK 643

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
                +G V  V  FGAFV     +DGL+HIS+LS + +   S+VVK GD + V +L  D
Sbjct: 644 EKMQLEGIVTNVTAFGAFVDIGVHQDGLIHISELSDQFIKDPSEVVKTGDKIKVTVLSVD 703

Query: 679 -DRGKIKLSMK 688
            +R +I LS +
Sbjct: 704 IERKRISLSAR 714


>gi|260893017|ref|YP_003239114.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
           KC4]
 gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
           KC4]
          Length = 654

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFG 634
            + ++  AKV   D    K+  S  A +E   E  R  T    +   + KG V +++ FG
Sbjct: 425 YLGQKVRAKVIELDRSRKKVVLSRKAVLEEEAERRRRETWEKLQEGAVVKGVVRRIVPFG 484

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AF+   G  DGL+H+S+++  RV    +V+KEG  + VK++  D +  K+ LS K +  +
Sbjct: 485 AFIDL-GGVDGLLHVSEIAWHRVNSPDEVLKEGQEIEVKVIKVDRENEKVSLSRKALLPD 543

Query: 694 TGKPI 698
             + +
Sbjct: 544 PWEKV 548



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +   V  + + +VV++  FGAFV      +GL+HIS  +   V K  DV+KEG
Sbjct: 543 DPWEKVPEKYPVGSLVEVKVVRLAPFGAFVELEPGVEGLIHISHFADWHVEKPEDVLKEG 602

Query: 668 DTVWVKLLDFDDR-GKIKLSMKV 689
           D V V+++ FD +  +++LS++ 
Sbjct: 603 DVVTVRVISFDPQEKRLRLSLRE 625


>gi|52143850|ref|YP_082978.1| 30S ribosomal protein S1 [Bacillus cereus E33L]
 gi|51977319|gb|AAU18869.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
           E33L]
          Length = 382

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 246 DADTQRISLSIKAAQPGPWENI 267



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +I    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENIGGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEENDLV-LSKRAVDAE 90


>gi|85714048|ref|ZP_01045037.1| 30S ribosomal protein S1 [Nitrobacter sp. Nb-311A]
 gi|85699174|gb|EAQ37042.1| 30S ribosomal protein S1 [Nitrobacter sp. Nb-311A]
          Length = 567

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 16/250 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKI 509
           I K +A I +GL  +G   +      G E  L   D      D      G   +  D   
Sbjct: 40  IEKDMAVIDVGLKTEGRVALREFSGPGRESTLKVGDEVEVFLDRIENALGEAVLSRDKAR 99

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              S   +  A Q  ++    I N++    +        F PR     +    IR+V   
Sbjct: 100 REESWGKLEKAFQNNEKVHGVIFNQVKGGFTVDLDGAVAFLPRS---QVDIRPIRDV--- 153

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            G ++         K++      V    + L E  A  E  + +    E  ++  G V  
Sbjct: 154 -GPLMNNTQPFQILKMDRRRGNIVVSRRTVLEETRA--EQRQELVQNLEEGQVIDGVVKN 210

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  + +  +I L MK
Sbjct: 211 ITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLAIGQTVKVKIIKINHETHRISLGMK 269

Query: 689 VVDQNTGKPI 698
            +  +  + I
Sbjct: 270 QLLDDPWQGI 279



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLGARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R    +  +   V    +G+V    +FG F+   G  DG+VH+S L  ++   +  D  K
Sbjct: 360 RNPWEAFIEKHPVGSTVEGEVKNKTEFGLFLGLEGDVDGMVHLSDLDWKQPGEQVIDNFK 419

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            GD V   +LD D ++ +I L +K ++ + 
Sbjct: 420 RGDMVKAVVLDVDVEKERISLGVKQLEGDP 449



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V++V D G  V   G      +  S+L+ +R  + S+    G+ V  +++ FD +
Sbjct: 461 VVTCEVLEVKDGGIEVQIAGTEFQTFIKRSELARDRNDQRSERFAVGEKVDARVIQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 521 ARKVQVSIKALEVAEEKEAI 540


>gi|262202743|ref|YP_003273951.1| Tex-like protein protein-like protein [Gordonia bronchialis DSM
           43247]
 gi|262086090|gb|ACY22058.1| Tex-like protein protein-like protein [Gordonia bronchialis DSM
           43247]
          Length = 815

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 35/208 (16%)

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP----PDQIRNVIGMGGKVIRGIVE 579
           A R           + +  RL    F      + IP    P    +V      VI  IVE
Sbjct: 518 AHRDAHGAFRRRKDLTNVPRLGPKAFEQCAGFLRIPDGDDPLDASSVHPESYPVIARIVE 577

Query: 580 QTGAKV-----------------NIDDDGTVKIASSSLAEIEAAREMIR----------- 611
           + G  V                  +DD          +AE++      R           
Sbjct: 578 KVGTDVRTLIGDSATLKRLRPDDFVDDTVGRPTVIDIIAELDKPGRDPRPEFKTATFAAG 637

Query: 612 -SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                      I +GQV  V  FGAFV     +DGLVH+S ++   V+   +VVK GD V
Sbjct: 638 IEKVSDLRPGMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDPREVVKSGDIV 697

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VK+++ D +R +I LS++ +D   G P
Sbjct: 698 TVKVMEVDVERKRIGLSLR-LDDEPGAP 724


>gi|154250605|ref|YP_001411429.1| 30S ribosomal protein S1 [Parvibaculum lavamentivorans DS-1]
 gi|154154555|gb|ABS61772.1| ribosomal protein S1 [Parvibaculum lavamentivorans DS-1]
          Length = 569

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 174 GNIVVSRRAVLEETRAEQRQELVENLKEG-QVLEGVVKNITDYGAFVDL-GGVDGLLHVT 231

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++  RV   ++V+  G TV V+++  + +  +I L MK ++ +  +
Sbjct: 232 DIAWRRVNHPTEVLSIGQTVKVQVIKVNHETQRISLGMKQLEADPWE 278



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   +KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 275 DPWEGVEAKYPLEARFKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 335 SQEVEVMVLEVDPVKRRISLGLKHCMDNPW 364



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              +  +   V  + +G++  + +FG F+      DG+VH+S L   R   +     ++G
Sbjct: 363 PWATFAERFPVGTVVEGEIKNITEFGLFIGLDADVDGMVHMSDLDWNRAGEEAMADYQKG 422

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V  ++LD D ++ +I L +K +  + 
Sbjct: 423 QVVKAQVLDVDTEKERISLGIKQLGGDP 450



 Score = 41.8 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 632 DFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
           D G  V          +  ++L+ +R  +  +    GD V  ++  FD  G+ I+LS+K 
Sbjct: 472 DNGLEVSVGDDNMTAFIRRAELARDRADQRPERFAVGDKVDARVTQFDRAGRKIQLSIKA 531

Query: 690 VDQNTGKPIV 699
           ++    K  V
Sbjct: 532 LEIAEEKEAV 541


>gi|194376504|dbj|BAG57398.1| unnamed protein product [Homo sapiens]
          Length = 854

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 161 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 220

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 221 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 255


>gi|72160504|ref|YP_288161.1| RNA binding S1:resolvase, RNase H-like fold [Thermobifida fusca YX]
 gi|71914236|gb|AAZ54138.1| RNA binding S1:Resolvase, RNase H-like fold [Thermobifida fusca YX]
          Length = 777

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 22/156 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIEAAREMIR----- 611
           +R ++   G+ IR ++  T    +      +D+   +   +  LAE+E      R     
Sbjct: 577 VRRILEATGRDIRALIGDTDTLRSLRPDDFVDERFGLPTVTDILAELEKPGRDPRPEFQT 636

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        E   + +G V  V  FGAFV      DGLVH+S +S   V    DVV
Sbjct: 637 AAFRDGVEDITDLEPGMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMSKSFVKDPRDVV 696

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK---VVDQNTGK 696
           K GD V VK+LD D  R +I L+++    VDQ +G+
Sbjct: 697 KPGDIVRVKVLDVDVRRKRISLTLRLDDEVDQRSGE 732


>gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
 gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
          Length = 441

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +    + ++    G+ IR  + +            +       AE  AARE   S    
Sbjct: 174 QVDRGYVADLSKFVGQKIRVKIIELDP---YKGRVILSRKQVLEAERTAARERFWSTVQE 230

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                + +G V  + DFGAF+   G  DGL+HIS++S  R+   S VV EG+ + VK+L 
Sbjct: 231 ---GDVLEGTVKSITDFGAFIDL-GGVDGLLHISEMSYGRIKHPSQVVSEGERIKVKVLR 286

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++GK+ L +K V  +    +
Sbjct: 287 LDREKGKVSLGLKQVLPDPWDSV 309



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 12/184 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI------MAIPPDQIRN 565
           +S   ++ A + A R R     +   VL  +   + +F   +++      + I       
Sbjct: 207 LSRKQVLEAERTAARERFWSTVQEGDVLEGTVKSITDFGAFIDLGGVDGLLHISEMSYGR 266

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +      V  G  E+   KV   D    K++      +    +   S+ +      I +G
Sbjct: 267 IKHPSQVVSEG--ERIKVKVLRLDREKGKVSLGLKQVLP---DPWDSVEEKYPEGAIVEG 321

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
            V ++  FGAFV      DGL+HISQ++  R+    +VV  GD V VK+++ D +  +I 
Sbjct: 322 TVARLTTFGAFVELEPGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQNRRIS 381

Query: 685 LSMK 688
           LS++
Sbjct: 382 LSLR 385



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKL 674
           VP+   I +GQVV+V D    V      +G++ +++LS   +    D  +K GD V V +
Sbjct: 52  VPKPGDIVRGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVV 111

Query: 675 LDFDDRG----KIKLSMKVVDQNTGKPI 698
           L  D +G    +I    +  +Q     +
Sbjct: 112 LSVDTKGEGGLRIS-KRRADEQLAWAEV 138


>gi|325520510|gb|EGC99606.1| 30S ribosomal protein S1 [Burkholderia sp. TJI49]
          Length = 570

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +   G  +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMVINIDRKSRGINLSIKAKD 532



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449


>gi|206561285|ref|YP_002232050.1| 30S ribosomal protein S1 [Burkholderia cenocepacia J2315]
 gi|198037327|emb|CAR53252.1| 30S ribosomal protein S1 [Burkholderia cenocepacia J2315]
          Length = 570

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVVTLTGDVEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMVINIDRKSRGINLSIKAKD 532



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449


>gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547]
 gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547]
          Length = 492

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 29/237 (12%)

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK-VLSESRLQL 546
            +   +     G+   +       I  + +V+     +   L   ++  + +LS+ R Q 
Sbjct: 47  EVLLDIGYKTEGVIPSRELSIKHDIDPDEVVVVGDTVEALVLQKEDKEGRLILSKKRAQY 106

Query: 547 GEFTPRVEIMA----IPPDQIRNV--------IGMGGKVIRGIVE-------------QT 581
                 +E +     +    +  V        IG+ G +   +VE             + 
Sbjct: 107 ERAWGTIEQIKEDDGVVTGSVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQEI 166

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            AK+   D     +  S  A +E  +  +R S     +  ++  G V  +++FGAFV   
Sbjct: 167 EAKIIELDKNRNNVVLSRRAWLEQTQSEVRTSFLKELQRGQVRPGVVSSIVNFGAFVDL- 225

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  DGLVH+S+LS + +    +VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 226 GGVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 282



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I   G+V+    E T   +++D D   V ++  +  E     +  +       + +I  G
Sbjct: 242 IDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLKATQE-----DPWQLFARTHAIGQIVPG 296

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+L+   V      V+ G  V+V+++D D +R +I 
Sbjct: 297 KVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDIDLERRRIS 356

Query: 685 LSMKVVDQ 692
           LS+K  +Q
Sbjct: 357 LSLKQANQ 364



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             E+ AA +      D      I +G +VKV      +      +G++   +LS +    
Sbjct: 16  QEELLAAIDETMKNFDD---GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDID 72

Query: 660 TSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             +VV  GDTV   +L   D  G++ LS K   
Sbjct: 73  PDEVVVVGDTVEALVLQKEDKEGRLILSKKRAQ 105


>gi|227503365|ref|ZP_03933414.1| transcription accessory protein [Corynebacterium accolens ATCC
           49725]
 gi|227075868|gb|EEI13831.1| transcription accessory protein [Corynebacterium accolens ATCC
           49725]
          Length = 774

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKV---------NIDDDGTVKIASSSLAEIEAA- 606
           A+ P+    V  +  +   GI E  G              D+   +   +  +AE++   
Sbjct: 556 AVHPEAYPIVTRIAEQTGLGIGELIGNTRVLDKLDPANFADETFGIPTVNDIIAELDKPG 615

Query: 607 ---REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
              R   ++ T    V+K+         +G V  V  FGAFV     +DGLVH+S +S +
Sbjct: 616 RDPRPEFKTATFKEGVHKVSDLTPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHQ 675

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V+   +VV+ G  V VK+++ D DR +I LS++ +D   G+P
Sbjct: 676 FVSDPHEVVRSGQVVKVKVMEVDVDRQRIGLSLR-LDDEPGQP 717


>gi|269214158|ref|ZP_05983718.2| protein YhgF [Neisseria cinerea ATCC 14685]
 gi|269144370|gb|EEZ70788.1| protein YhgF [Neisseria cinerea ATCC 14685]
          Length = 761

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 609 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 668

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 669 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGG 720


>gi|167563628|ref|ZP_02356544.1| 30S ribosomal protein S1 [Burkholderia oklahomensis EO147]
 gi|167570790|ref|ZP_02363664.1| 30S ribosomal protein S1 [Burkholderia oklahomensis C6786]
          Length = 570

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +      +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVITLTPDVEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMVINIDRKSRGINLSIKAKD 532



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449


>gi|161702964|ref|YP_368401.2| 30S ribosomal protein S1 [Burkholderia sp. 383]
          Length = 570

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMVINIDRKSRGINLSIKAKD 532



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSETG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449


>gi|113866824|ref|YP_725313.1| 30S ribosomal protein S1 [Ralstonia eutropha H16]
 gi|113525600|emb|CAJ91945.1| SSU ribosomal protein S1 [Ralstonia eutropha H16]
          Length = 564

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 141 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 195

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 196 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 253

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 254 DQEKNRVSLGVKQLGEDPW 272



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 287 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 346

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 347 ISLGMKQCKANPWDD 361



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +           +   +      GQ+  + DFG F+   G  D
Sbjct: 338 LDIDEDKRRISLGMKQCKAN----PWDDFSRNHKKGDKLAGQIKSITDFGVFIGLPGGID 393

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 394 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLGIDVDKERISLGIKQLSGDP 445



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G +  V   GA V      +G +  S++S +RV    +V+KEG+ +   +++ D + 
Sbjct: 458 LVQGTIKAVDAKGAVVQLADDVEGYLRASEISADRVEDARNVLKEGEQITALVVNVDRKS 517

Query: 682 K-IKLSMKVVD 691
           + I LS+K  D
Sbjct: 518 RNINLSIKAKD 528


>gi|2330910|gb|AAC45837.1| similar to Bordetella pertussis toxin accessory protein encoded by
           GenBank Accession Number X95386 [Neisseria gonorrhoeae]
          Length = 265

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 113 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGLVSNVANFGAFVDIGVHQD 172

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 173 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 224


>gi|300692113|ref|YP_003753108.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum PSI07]
 gi|299079173|emb|CBJ51841.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum PSI07]
          Length = 562

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 139 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 194 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 252 DQEKNRVSLGVKQLGEDPW 270



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 285 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 344

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 345 ISLGMKQCKANPWDD 359



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 336 LDIDEDKRRISLGMKQCKAN----PWDDFARNHKKGDKLSGQIKSITDFGVFIGLPGGID 391

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 392 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSGDP 443



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I    +  V   GA V      +G +  S++S++RV    +V+KEG
Sbjct: 442 DPFNNFISTNDKGSIVSVTIKAVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEG 501

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           +T+   +++ D + + I +S+K  D
Sbjct: 502 ETMTAMIVNIDRKSRNINVSIKAKD 526


>gi|268592315|ref|ZP_06126536.1| protein YhgF [Providencia rettgeri DSM 1131]
 gi|291312098|gb|EFE52551.1| protein YhgF [Providencia rettgeri DSM 1131]
          Length = 776

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+LD D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVLDVDIA 710

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ +Q
Sbjct: 711 RKRIALTMRLDEQ 723


>gi|162218058|ref|YP_620452.2| 30S ribosomal protein S1 [Burkholderia cenocepacia AU 1054]
          Length = 570

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA V   G  +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKTVDAKGAVVTLTGDIEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMVINIDRKSRGINLSIKAKD 532



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449


>gi|157676004|emb|CAP07843.1| putative transcriptional accessory protein [Neisseria canis]
          Length = 762

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 13/169 (7%)

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------VEQTGAK-- 584
            E     +            +  + I   +  ++IG   + I+ I       EQ G    
Sbjct: 553 KEPLDASAVHPEAYPVVAKMLADLHI---KAADLIGNR-EKIKQIKPTSYTTEQFGLPTI 608

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A      +     +V  I +G V  V +FGAFV     +D
Sbjct: 609 MDILAELEKPGRDPRGEFQTATFAEGINEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 668

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GLVHIS LS   V    +VVK GD V VK+L+ D  R +I L+M++ D+
Sbjct: 669 GLVHISALSNRFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDE 717


>gi|321257277|ref|XP_003193532.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317460002|gb|ADV21745.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1188

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 12/102 (11%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG----------ARDGLVHISQLSTER 656
           R    ++ + P + KIY G +  + DFGAFV   G          + +GLVH+S ++  R
Sbjct: 210 RHGRPTLDERPVLYKIYNGTIANITDFGAFVTLDGVERRVNGNQRSNEGLVHVSNITNGR 269

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           V    D +K G  V VK++      KI LSMK VDQ+TG  +
Sbjct: 270 VNSARDFLKRGQRVKVKVMTVSP--KIGLSMKDVDQDTGYDL 309


>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
 gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
          Length = 232

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 14/171 (8%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R +  + GLL +  GSS F +GDTQ +     G  E +     L+    +   +   F
Sbjct: 14  ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAA-YGPVEVK-----LNKELIDRATLEVIF 67

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P       ++G P   E     + R +  P++        +L IV ++ ++ GS     
Sbjct: 68  RP-------KIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCA 120

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           V  + LA+MDAG P+   + GI    + + D+ ++   +  +      + F
Sbjct: 121 VNAACLAMMDAGFPMRCMMCGITCA-ITEQDELVLDPTLEQERKATAVLTF 170



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 19  ETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPG 75
           E G + + +DG+     G+T V+A       +   K+  D   L V ++ +         
Sbjct: 21  EHGLLDK-ADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRPKI-------- 71

Query: 76  GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
                   P  +E L+  +I  S  P+          + I V       S    ++ AA 
Sbjct: 72  ------GIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCAVNAAC 125

Query: 136 AALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQG 172
            A+M +G P    + G         + VL+P L++++ 
Sbjct: 126 LAMMDAGFPMRCMMCGITCAITEQDELVLDPTLEQERK 163


>gi|119572061|gb|EAW51676.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_a [Homo
           sapiens]
          Length = 952

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 252 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 311

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 312 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 346


>gi|75674405|ref|YP_316826.1| 30S ribosomal protein S1 [Nitrobacter winogradskyi Nb-255]
 gi|74419275|gb|ABA03474.1| SSU ribosomal protein S1P [Nitrobacter winogradskyi Nb-255]
          Length = 567

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 97/250 (38%), Gaps = 16/250 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKI 509
           I K +A I +GL  +G   +      G E  L   D      D      G   +  D   
Sbjct: 40  IEKDMAVIDVGLKTEGRVALREFSGPGRESTLKVGDEVEVFLDRIENALGEAVLSRDKAR 99

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              S   +  A    ++    I N++    +        F PR     +    IR+V   
Sbjct: 100 REESWGKLEKAFNNNEKVHGVIFNQVKGGFTVDLDGAVAFLPRS---QVDIRPIRDV--- 153

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            G ++         K++      V    + L E  A  E  + +    E  ++  G V  
Sbjct: 154 -GPLMNNTQPFQILKMDRRRGNIVVSRRTVLEETRA--EQRQELVQNLEEGQVIDGVVKN 210

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  + +  +I L MK
Sbjct: 211 ITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLAIGQTVKVKIIKINHETHRISLGMK 269

Query: 689 VVDQNTGKPI 698
            +  +  + I
Sbjct: 270 QLLDDPWQGI 279



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLGARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R    +  +   V    +G+V    +FG F+   G  DG+VH+S L  ++   +  D  K
Sbjct: 360 RNPWEAFIEKHPVGSTVEGEVKNKTEFGLFLGLEGDVDGMVHLSDLDWKQPGEQVIDNFK 419

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            GD V   +LD D ++ +I L +K ++ + 
Sbjct: 420 RGDMVKAVVLDVDVEKERISLGVKQLEGDP 449



 Score = 44.9 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V++V D G  V   G      +  S+L+ +R  + ++    G+ V  +++ FD +
Sbjct: 461 VVTCEVLEVKDGGIEVQISGTEFQTFIKRSELARDRNDQRTERFAVGEKVDARVIQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 521 ARKVQVSIKALEVAEEKEAI 540


>gi|167841227|ref|ZP_02467911.1| 30S ribosomal protein S1 [Burkholderia thailandensis MSMB43]
          Length = 570

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +      +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVITLTPDVEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + V   +++ D + + I LS+K  D
Sbjct: 508 EKVNAMVINIDRKSRGINLSIKAKD 532


>gi|167586532|ref|ZP_02378920.1| 30S ribosomal protein S1 [Burkholderia ubonensis Bu]
          Length = 570

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +   G  +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVITLTGDIEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMVINIDRKSRGINLSIKAKD 532



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449


>gi|75763037|ref|ZP_00742826.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489469|gb|EAO52896.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 313

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 64  VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 118

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 119 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 176

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 177 DADTQRISLSIKAAQPGPWENVA 199



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 190 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 249

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 250 EMGQEVKVKVLEVHAAEKRISLSIKEALEE 279


>gi|289577757|ref|YP_003476384.1| Tex-like protein [Thermoanaerobacter italicus Ab9]
 gi|289527470|gb|ADD01822.1| Tex-like protein [Thermoanaerobacter italicus Ab9]
          Length = 712

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +      G V  V DFG FV      DGLVHIS++S   +    DVV  GD V 
Sbjct: 635 MTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVK 694

Query: 672 VKLLDFD-DRGKIKLSMK 688
           VK+L  D +R +I LSMK
Sbjct: 695 VKVLSVDLERNRISLSMK 712


>gi|330939639|gb|EGH42945.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+   + GK +   V +   K N      V ++  S+ E E + E    +  + 
Sbjct: 31  VDVRPVRDTTHLEGKELEFKVIKLDQKRN-----NVVVSRRSVLEAENSAEREALLESLQ 85

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L +
Sbjct: 86  EGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKY 143

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +R ++ L +K + ++    I
Sbjct: 144 DRERNRVSLGLKQLGEDPWVAI 165



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+  +   +V+ +          + +GG     
Sbjct: 54  LDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLL 113

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VN+ D+  VK+          +        +   +I      + 
Sbjct: 114 HITDMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPEST 173

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD- 679
               +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+ 
Sbjct: 174 RVTARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEE 233

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 234 RRRISLGIKQCKSNPWED 251



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 334 DPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 393

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    K  +
Sbjct: 394 EEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 426



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 211 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 256

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 257 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 315

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 316 SVDPERERISLGIKQLESDP 335


>gi|256003709|ref|ZP_05428697.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
 gi|255992270|gb|EEU02364.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
          Length = 419

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S + +V A +       +++  +   +  S   +  F P  ++       +   +     
Sbjct: 111 SWDDIVKAYENKTPVNAYVVEVVKGGVIASYKGVRIFVPASQVSDRYVKDLNEFLKRSIT 170

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           V    + +   KV       V  A   + E + A        +  EV K++KG V  + D
Sbjct: 171 VRILELNEKRRKV-------VGSARVIIEEEKEALANR--TWNSMEVGKVFKGTVKSLTD 221

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV   G  DGL+HIS+LS  RV   S+V+K GD V V +L+FD ++ K+ L  + ++
Sbjct: 222 FGAFVDI-GGVDGLIHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKME 280

Query: 692 QNTG 695
            N  
Sbjct: 281 DNPW 284



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +V  + K  V++   FGAFV      DGLVHISQ+S++R+AK  D ++ G 
Sbjct: 283 PWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSKRLAKVEDALEIGM 342

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            V  K+++ D +  KI LS+K V
Sbjct: 343 KVDAKIIEVDGENKKISLSIKEV 365


>gi|189425204|ref|YP_001952381.1| ribosomal protein S1 [Geobacter lovleyi SZ]
 gi|189421463|gb|ACD95861.1| ribosomal protein S1 [Geobacter lovleyi SZ]
          Length = 573

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 13/224 (5%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D  G+         KV  +  G             +   +  A  +       I+ + + 
Sbjct: 74  DAEGNVSVSVGDKVKVVSSRDGGNKFSKKRADQMAAWETIHEAGGEGAVLEGTIIAKTNG 133

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIA 596
             + +   +  F P  ++   P       IG+ G+            ++++   G + ++
Sbjct: 134 GFTVAIGGINAFLPASQVDTRPSGNGDAYIGVAGQ---------FKVISLNQKRGNIVLS 184

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
             +L E E A     ++  + E  +I +G V  + ++GAFV   G  DGL+H++ +S  R
Sbjct: 185 RRALLEEERAESRKATLEKLSEG-QIMQGVVKNLTEYGAFVDL-GGVDGLLHVTDISWGR 242

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           V K +DV+K G  V VK+L FD ++GK+ + +K    +  + I 
Sbjct: 243 VGKPADVLKPGQEVNVKILKFDREKGKVSVGIKQTLPDPWQDIA 286



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
             +SI +   V    +GQ+  + DFG F+      DGLVH+S +S  +RV    DV  +G
Sbjct: 368 PWQSIAERYPVGTKLEGQIKNMTDFGMFIGIEEGIDGLVHVSDISWTKRVKHPGDVYSKG 427

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           D V   +L  D +  ++ L +K +  +  
Sbjct: 428 DLVQAVVLKVDPQNERVSLGIKQLTPDPW 456



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 13/142 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             +  +V+  G        ++   K+   D    K++      +    +  + I +    
Sbjct: 243 VGKPADVLKPG--------QEVNVKILKFDREKGKVSVGIKQTLP---DPWQDIANRFPE 291

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
                G+VV +MD+GAF+      +GLVH+S++S  +RV K +D++  GD V V +L  D
Sbjct: 292 GTRVSGKVVSLMDYGAFIELESGIEGLVHVSEMSWTKRVRKAADMLNVGDQVDVVVLGVD 351

Query: 679 DRGK-IKLSMKVVDQNTGKPIV 699
            + + I L +K V+ N  + I 
Sbjct: 352 LQNRKISLGLKQVNDNPWQSIA 373



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
             G+V    DFG FV      +GL+H+S+LS E+V    D    GD++   +L+ D R  
Sbjct: 469 LVGKVASTTDFGVFVEIEEGIEGLIHVSELSREKVPSAKDFAIVGDSIEAVVLNADSRER 528

Query: 682 KIKLSMKVV 690
           +I LS+K +
Sbjct: 529 RISLSVKSL 537



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           + E     V+ DD      ++       A+ +        PE +KI +G VV+V      
Sbjct: 1   MTEVKRLNVDTDDMDVEHQSNEFAELFSASLKEQE----RPERDKILEGTVVRVDPDTVL 56

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           V      +G V IS+         S  V  GD V V +   D   K   S K  DQ
Sbjct: 57  VDVGRKSEGFVPISEFRDAE-GNVS--VSVGDKVKV-VSSRDGGNK--FSKKRADQ 106


>gi|261494117|ref|ZP_05990620.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496042|ref|ZP_05992452.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308292|gb|EEY09585.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310283|gb|EEY11483.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 774

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+L+ 
Sbjct: 651 KAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDVVKVKVLEV 710

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M++ D+ T K
Sbjct: 711 DAARKRIALTMRLDDKPTDK 730


>gi|89892399|gb|ABD78984.1| HI0568-like protein [Haemophilus influenzae]
          Length = 770

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNSG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|323135904|ref|ZP_08070987.1| Tex-like protein-like [Methylocystis sp. ATCC 49242]
 gi|322398995|gb|EFY01514.1| Tex-like protein-like [Methylocystis sp. ATCC 49242]
          Length = 770

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAFV     +DGLVHIS LS E V     VVK GD V VK+++ 
Sbjct: 645 KPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHISALSKEFVKDPRSVVKPGDIVKVKVMEV 704

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I LSM+ +D   G+
Sbjct: 705 DVPRKRISLSMR-LDDAPGQ 723


>gi|148825153|ref|YP_001289906.1| transcription elongation factor GreB [Haemophilus influenzae
           PittEE]
 gi|148715313|gb|ABQ97523.1| transcription elongation factor GreB [Haemophilus influenzae
           PittEE]
          Length = 770

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNSG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
           exoribonuclease [Medicago truncatula]
          Length = 241

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R ++    +L R HGS+ + +G+T+ +  V  G +         +GT++N
Sbjct: 5   RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +     +           +G   R    +  + ++ +  +  +T     T  ++  +   
Sbjct: 55  ENPEKASIEVIWKPNTGHVGQADR---EYEMILKKTLESICIRTIYPNTTTSVI--VVHD 109

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           DG+     +  +  AL+DAG+P+      I   +    D+  I+ D S  E+        
Sbjct: 110 DGALLPCAINAACAALVDAGIPLRHLAVAICCSV---TDNNSIILDPSKKEEEKSKAFAY 166

Query: 493 VAGTDSGITAMQMDMKIGG 511
           +   ++ ++ +       G
Sbjct: 167 LVFPNTTVSVVPEKSSQVG 185



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 73/186 (39%), Gaps = 25/186 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     GET VLA V   +      +  +   + V ++  T  VG+           
Sbjct: 27  AHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEVIWKPNTGHVGQ----------- 75

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             + E  +  ++ +++  +  +     T   + V+  D    P   ++ AA AAL+ +G+
Sbjct: 76  -ADREYEM--ILKKTLESICIRTIYPNTTTSVIVVHDDGALLPC--AINAACAALVDAGI 130

Query: 144 PFEGPVVGAQVDYINGQ-YVLNPRLDEDQGS---LDLFVSGTQDAVLMVELEANQLSEDV 199
           P     V       +    +L+P   E++ S     L    T  +V+    +++Q+  D 
Sbjct: 131 PLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPNTTVSVV--PEKSSQVGNDP 188

Query: 200 VLDAII 205
           +   II
Sbjct: 189 MAHGII 194


>gi|261365311|ref|ZP_05978194.1| protein YhgF [Neisseria mucosa ATCC 25996]
 gi|288566239|gb|EFC87799.1| protein YhgF [Neisseria mucosa ATCC 25996]
          Length = 757

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEARG 716


>gi|149190642|ref|ZP_01868910.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1]
 gi|148835525|gb|EDL52494.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1]
          Length = 773

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V +FGAFV     +DGLVHIS L+ + VA   +VVK GD V VK+++ 
Sbjct: 649 EPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKFVADPREVVKAGDIVKVKVMEV 708

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I LSM+ ++   G+ 
Sbjct: 709 DAARKRIGLSMR-LNDEPGQD 728


>gi|268316851|ref|YP_003290570.1| 30S ribosomal protein S1 [Rhodothermus marinus DSM 4252]
 gi|262334385|gb|ACY48182.1| ribosomal protein S1 [Rhodothermus marinus DSM 4252]
          Length = 720

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +I +  +   + +G+VV + D+GAFV      +GLVHIS++S  + +   S  V  
Sbjct: 365 HPWENIDEKYKEGDVVEGKVVSITDYGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSL 424

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           G  V VK+L+ D  G+ I L MK ++ N  +
Sbjct: 425 GQLVKVKILNIDREGRKISLGMKQLEPNPWE 455



 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P  +I   P       IG         +E    K+N  ++  V    + L +   
Sbjct: 227 LEAFLPGSQIDVRPVRDFDAYIGKR-------MEFKIVKINPANENVVVSHRALLEKELQ 279

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             +    I    E  ++ +G V  + DFG F+   G  DGL+HI+ LS  RV+  S++V+
Sbjct: 280 --KQREEILSKMEPGQVLEGTVKNITDFGVFIDL-GGVDGLLHITDLSWGRVSHPSELVQ 336

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G  + V +LD+D +R +I L +K +  +  + I
Sbjct: 337 LGQKLNVVVLDYDKERQRISLGLKQLQPHPWENI 370



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +NID +G          E          ++       + +G+V K+ +FG FV      D
Sbjct: 433 LNIDREGRKISLGMKQLEPN----PWEGLSKRYPPGTVLRGKVRKITNFGVFVEIEPGID 488

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKP 697
           GLVHIS LS   R+   S+VVKEG+ + V +L+ D+   +I L  K V  N    
Sbjct: 489 GLVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQVQTNPWND 543


>gi|241152816|ref|XP_002406956.1| RNA helicase, putative [Ixodes scapularis]
 gi|215493984|gb|EEC03625.1| RNA helicase, putative [Ixodes scapularis]
          Length = 1122

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTE-RVAKTSDVVKEGDTV 670
             P V +IY G+V  +M FG FV   G     +GLVHISQL  E R+    DVV  G  V
Sbjct: 165 PDPVVGQIYNGKVTNIMQFGCFVQLEGLPRRWEGLVHISQLRREGRITNVGDVVARGQRV 224

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            VK+L F  + K  LSMK VDQ+TG+ +
Sbjct: 225 KVKVLSFTGQ-KTSLSMKDVDQDTGEDL 251


>gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|3122814|sp|O06000|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog
 gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987]
          Length = 382

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + I 
Sbjct: 246 DADTQRISLSIKAAQPGPWENIA 268



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +I    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENIAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEAFEE 348



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+    + +K++  ++   + LS + VD  
Sbjct: 61  VVELDQILELKIIKLEENDLV-LSKRAVDAE 90


>gi|300718780|ref|YP_003743583.1| transcriptional accessory protein [Erwinia billingiae Eb661]
 gi|299064616|emb|CAX61736.1| putative transcriptional accessory protein [Erwinia billingiae
           Eb661]
          Length = 778

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVHIS LS + +     VVK GD V VK+++ D  
Sbjct: 652 MVLEGAVTNVTGFGAFVDIGVHQDGLVHISSLSDKFIDDPHKVVKAGDIVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R ++ L+M+ +D+  G+
Sbjct: 712 RKRVALTMR-LDEQPGE 727


>gi|297203813|ref|ZP_06921210.1| transcriptional accessory protein [Streptomyces sviceus ATCC 29083]
 gi|297148507|gb|EDY55899.2| transcriptional accessory protein [Streptomyces sviceus ATCC 29083]
          Length = 795

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGL H+S LS   V    DVVK GD V VK+LD D  
Sbjct: 667 MVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKVKVLDVDIP 726

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L++++ D+   KP
Sbjct: 727 RKRISLTLRLDDEAQAKP 744


>gi|291300160|ref|YP_003511438.1| RNA binding S1 domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569380|gb|ADD42345.1| RNA binding S1 domain protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 783

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            + +G V  V  FGAFV     +DGLVHIS +S + VA   DV K GD V V++L+ D+ 
Sbjct: 654 MVLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNDYVADPRDVAKPGDIVKVRVLEVDEA 713

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L+M++ D+   KP
Sbjct: 714 RKRISLTMRLQDKAEAKP 731


>gi|297273171|ref|XP_002800602.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Macaca mulatta]
          Length = 1198

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 254 KHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 313

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ +G+ +
Sbjct: 314 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQESGEDL 348


>gi|268608950|ref|ZP_06142677.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Ruminococcus flavefaciens FD-1]
          Length = 657

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG-MGGKVIRGIVEQ 580
           +QA   ++    E   VL      +      +    +      ++ G   G  +  ++++
Sbjct: 382 EQAGYEKIVKAQEEGTVLEGVVQHVVNKGVTLTAFGVRVFIPASLTGLPRGAELEQLLKK 441

Query: 581 TGAKVNID-DDGTVKIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
               + I+  +G  K A  S+  ++ A+  E      +  EV   Y G+V  +  FGAFV
Sbjct: 442 KVEFIVIEVSEGGRKRAVGSIKAVQNAKKAEAQAKFWETAEVGATYTGKVKSLTSFGAFV 501

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DG+VHIS+LS +R+   S+VV  GDT+ V + + D +  +I L  K  + N  +
Sbjct: 502 DL-GGIDGMVHISELSWKRIKHPSEVVNVGDTLEVYIKELDKEANRISLGYKKTEDNPWE 560



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +V  I K  +V +  FGAF       DGL+HISQ++  +V    DV+  GD
Sbjct: 558 PWEIFKAQYKVGDIVKATIVSITSFGAFAQIIDGVDGLIHISQIADRKVENVKDVLSVGD 617

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            V VK++D D D  +I +SM+ +
Sbjct: 618 EVDVKIIDIDYDSKRISISMRAL 640



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I  G      I+++   K+  ++     I ++   +I+ A+ +  S   +    K+ KG 
Sbjct: 262 ITAGASTPAYIIKEVQTKMAENE-----ILAAQDEDIDFAQALDESFKKIHTGEKV-KGT 315

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           VV V +  A V       G V+I  L+ +   K +D+V  GD + + ++  +D  G + L
Sbjct: 316 VVAVNNTEAIVDLGTKHTGYVNIDDLTDDPSQKPADIVSVGDEIDLIVIKVNDAEGTVAL 375

Query: 686 SMKVVDQNTG 695
           S K VD+  G
Sbjct: 376 SKKKVDEQAG 385


>gi|297587825|ref|ZP_06946469.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516]
 gi|297574514|gb|EFH93234.1| S1 RNA binding domain protein [Finegoldia magna ATCC 53516]
          Length = 697

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 101/263 (38%), Gaps = 41/263 (15%)

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E   ++    +  +S AL++        V+GI     K+  D+ I            
Sbjct: 473 EVVEDCVNTVGVNINTASSALLN-------YVSGITKTTAKNIVDYKI------------ 513

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
                    +   T  Q  +K+ GI     V      +      + + ++V  ES  ++ 
Sbjct: 514 --------ENGPFTNRQEILKVKGIGPKAFVQCAGFLRIPESEEILDNTEVHPESY-EIA 564

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           +   + ++  I   ++   + +G   +R I+E+             K       E+    
Sbjct: 565 KQIMKYDLNDIDVKKLSEELEVGEPTLRDIIEELK-----------KPGRDPRDEMPKPV 613

Query: 608 EMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                   D  E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 614 LRQDVLSIDDLEEGMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSDSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
            DTV VK++  D DRG + LSMK
Sbjct: 674 SDTVKVKIIGIDKDRGLVSLSMK 696


>gi|269214248|ref|ZP_06158449.1| protein YhgF [Neisseria lactamica ATCC 23970]
 gi|269210237|gb|EEZ76692.1| protein YhgF [Neisseria lactamica ATCC 23970]
          Length = 283

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +          A   A+           +V  I +G V  V +FGAFV     +D
Sbjct: 131 LDILSELEKPGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 190

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+  G
Sbjct: 191 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGG 242


>gi|328777663|ref|XP_395806.4| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Apis
           mellifera]
          Length = 210

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 19/198 (9%)

Query: 367 SGTQRNDFMMHY----NFLPCA--TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
           S      F + Y    +    +  +GE  R     R+        + A+  ++       
Sbjct: 6   SNMGTLKFWLQYMDLISMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPR 65

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK----DGDDFII- 475
             + I  E  + DGS   A+V  ++LAL+DAG+PI     G  + L+     + +D  + 
Sbjct: 66  SQIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLE 125

Query: 476 --LSDISGDEDHLGHMDFKVAGTDS--GITAMQMDMKIGG----ISENIMVMALQQAKRG 527
             + D +  E+    +   V    +  GI+   + +   G    +  +       +   G
Sbjct: 126 KGVLDANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLCG 185

Query: 528 RLHILNEMSKVLSESRLQ 545
              I   +   + +   +
Sbjct: 186 CQDIKTILDHAVRQYLTE 203



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
           AV  +  G  +R+ R        S  +  ++  +        +Q+ I V    ++ S + 
Sbjct: 24  AVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQVDGSEYC 83

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLD 175
            S+ AA+ AL+ +G+P +   +G  V  IN      P L+++  +L+
Sbjct: 84  ASVNAATLALIDAGIPIKNYAIGCTVTLIN-----CPSLEDEDNTLE 125


>gi|157676010|emb|CAP07846.1| putative transcriptional accessory protein [Neisseria animalis]
          Length = 762

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 13/170 (7%)

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------VEQTGAK-- 584
            E     +            ++ + I   +  ++IG   + I+ I       EQ G    
Sbjct: 549 KEPLDASAVHPEAYPVVAKMLDDLQI---KAADLIGNR-EKIKQIKPAGYTTEQFGLPTI 604

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A      +     +   I +G V  V +FGAFV     +D
Sbjct: 605 LDILAELEKPGRDPRGEFQTATFAEGINEIKDLQPGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+ 
Sbjct: 665 GLVHISALSDKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEP 714


>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 237

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 30  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 76

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 77  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 136

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+A  L  DG   ++L   S  E     +
Sbjct: 137 NAACMALVDAGVPMRALFCGVACALDSDGT--LVLDPTSKQEKEARAV 182



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 44  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 89

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 90  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 149

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 150 MRALFCGVACALDSDGTLVLDPTSKQEK 177


>gi|53720125|ref|YP_109111.1| 30S ribosomal protein S1 [Burkholderia pseudomallei K96243]
 gi|53724787|ref|YP_102241.1| 30S ribosomal protein S1 [Burkholderia mallei ATCC 23344]
 gi|67642915|ref|ZP_00441666.1| 30S ribosomal protein S1 [Burkholderia mallei GB8 horse 4]
 gi|76809559|ref|YP_334373.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1710b]
 gi|83719745|ref|YP_442175.1| 30S ribosomal protein S1 [Burkholderia thailandensis E264]
 gi|121599264|ref|YP_993874.1| 30S ribosomal protein S1 [Burkholderia mallei SAVP1]
 gi|124384139|ref|YP_001026937.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10229]
 gi|126441941|ref|YP_001059901.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 668]
 gi|126450751|ref|YP_001079776.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10247]
 gi|126454931|ref|YP_001067190.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106a]
 gi|134277319|ref|ZP_01764034.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 305]
 gi|166999732|ref|ZP_02265566.1| 30S ribosomal protein S1 [Burkholderia mallei PRL-20]
 gi|167581053|ref|ZP_02373927.1| 30S ribosomal protein S1 [Burkholderia thailandensis TXDOH]
 gi|167619131|ref|ZP_02387762.1| 30S ribosomal protein S1 [Burkholderia thailandensis Bt4]
 gi|167720666|ref|ZP_02403902.1| 30S ribosomal protein S1 [Burkholderia pseudomallei DM98]
 gi|167739654|ref|ZP_02412428.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 14]
 gi|167816859|ref|ZP_02448539.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 91]
 gi|167825259|ref|ZP_02456730.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 9]
 gi|167846763|ref|ZP_02472271.1| 30S ribosomal protein S1 [Burkholderia pseudomallei B7210]
 gi|167895351|ref|ZP_02482753.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 7894]
 gi|167903737|ref|ZP_02490942.1| 30S ribosomal protein S1 [Burkholderia pseudomallei NCTC 13177]
 gi|167911986|ref|ZP_02499077.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 112]
 gi|167919977|ref|ZP_02507068.1| 30S ribosomal protein S1 [Burkholderia pseudomallei BCC215]
 gi|217421085|ref|ZP_03452590.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 576]
 gi|226197856|ref|ZP_03793430.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pakistan 9]
 gi|237813295|ref|YP_002897746.1| ribosomal protein S1 [Burkholderia pseudomallei MSHR346]
 gi|242316257|ref|ZP_04815273.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106b]
 gi|254176819|ref|ZP_04883476.1| 30S ribosomal protein S1 [Burkholderia mallei ATCC 10399]
 gi|254181089|ref|ZP_04887687.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1655]
 gi|254192045|ref|ZP_04898545.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pasteur 52237]
 gi|254195641|ref|ZP_04902068.1| 30S ribosomal protein S1 [Burkholderia pseudomallei S13]
 gi|254203925|ref|ZP_04910285.1| 30S ribosomal protein S1 [Burkholderia mallei FMH]
 gi|254208905|ref|ZP_04915253.1| 30S ribosomal protein S1 [Burkholderia mallei JHU]
 gi|254258613|ref|ZP_04949667.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1710a]
 gi|254295621|ref|ZP_04963079.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 406e]
 gi|254360040|ref|ZP_04976310.1| 30S ribosomal protein S1 [Burkholderia mallei 2002721280]
 gi|257138364|ref|ZP_05586626.1| 30S ribosomal protein S1 [Burkholderia thailandensis E264]
 gi|52210539|emb|CAH36522.1| 30S ribosomal protein S1 [Burkholderia pseudomallei K96243]
 gi|52428210|gb|AAU48803.1| ribosomal protein S1 [Burkholderia mallei ATCC 23344]
 gi|76579012|gb|ABA48487.1| ribosomal protein S1 [Burkholderia pseudomallei 1710b]
 gi|83653570|gb|ABC37633.1| ribosomal protein S1 [Burkholderia thailandensis E264]
 gi|121228074|gb|ABM50592.1| 30S ribosomal protein S1 [Burkholderia mallei SAVP1]
 gi|124292159|gb|ABN01428.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10229]
 gi|126221434|gb|ABN84940.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 668]
 gi|126228573|gb|ABN92113.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106a]
 gi|126243621|gb|ABO06714.1| 30S ribosomal protein S1 [Burkholderia mallei NCTC 10247]
 gi|134250969|gb|EBA51048.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 305]
 gi|147745437|gb|EDK52517.1| 30S ribosomal protein S1 [Burkholderia mallei FMH]
 gi|147750781|gb|EDK57850.1| 30S ribosomal protein S1 [Burkholderia mallei JHU]
 gi|148029280|gb|EDK87185.1| 30S ribosomal protein S1 [Burkholderia mallei 2002721280]
 gi|157805534|gb|EDO82704.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 406e]
 gi|157987867|gb|EDO95632.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pasteur 52237]
 gi|160697860|gb|EDP87830.1| 30S ribosomal protein S1 [Burkholderia mallei ATCC 10399]
 gi|169652387|gb|EDS85080.1| 30S ribosomal protein S1 [Burkholderia pseudomallei S13]
 gi|184211628|gb|EDU08671.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1655]
 gi|217396497|gb|EEC36514.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 576]
 gi|225930044|gb|EEH26057.1| 30S ribosomal protein S1 [Burkholderia pseudomallei Pakistan 9]
 gi|237504090|gb|ACQ96408.1| ribosomal protein S1 [Burkholderia pseudomallei MSHR346]
 gi|238524132|gb|EEP87567.1| 30S ribosomal protein S1 [Burkholderia mallei GB8 horse 4]
 gi|242139496|gb|EES25898.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1106b]
 gi|243064225|gb|EES46411.1| 30S ribosomal protein S1 [Burkholderia mallei PRL-20]
 gi|254217302|gb|EET06686.1| 30S ribosomal protein S1 [Burkholderia pseudomallei 1710a]
          Length = 570

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 145 VDTRPVKDTTPYEGKTLEFRVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLK 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 200 EGA-IVNGVVKNITDYGAFVDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKF 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ L +K +  +  + I
Sbjct: 258 DQEKNRVSLGIKQLGDDPWEGI 279



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +      +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVITLTPDVEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + V   +++ D + + I LS+K  D
Sbjct: 508 EKVNAMVINIDRKSRGINLSIKAKD 532


>gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 383

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      + S      +  +E    +    E     +G+V ++ +FGAFV   G  D
Sbjct: 161 IEIDRQKNKAVLSRKEVLQQENKEKKADVFAKLEKGMQIRGEVKRLTNFGAFVDI-GGID 219

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           GLVHIS+LS  RV   S+VV   D V VK++DFD+  GK+ LS+K       
Sbjct: 220 GLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGKVSLSIKQTQPEPW 271



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+ T K++ S         E    I D  +   I +G+VV+++DFGAFV      DGLVH
Sbjct: 253 DETTGKVSLSIKQTQP---EPWTLIADKFKAGDILEGKVVRLVDFGAFVELMPGLDGLVH 309

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           ISQ+S   +AK S+ +  G  V VK+LD + D  +I LSM    +++ +
Sbjct: 310 ISQISEAHIAKPSEELHVGQNVNVKVLDINIDGKRISLSMTAAQEDSTE 358



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              ++E   E I      P+  ++  G+V++V D G  V+     DG+V   ++S +   
Sbjct: 1   MSHDMEELMEEIEKSLIRPKRGEVVTGKVIQVSDKGITVNIGYKADGIVPRDEISNDPTI 60

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              DV K  D + V ++  DD  G + LS K V+   G
Sbjct: 61  TPQDVAKADDEISVYIIKTDDGEGNVLLSTKRVEHTKG 98


>gi|294651819|ref|ZP_06729113.1| YhgF family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822283|gb|EFF81192.1| YhgF family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 784

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 20/148 (13%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 578 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 632

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 633 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPHKVVKPGQI 691

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V V+++  D +R ++ LSM+       K
Sbjct: 692 VQVRVMQVDVERNRVNLSMRAEGSPPAK 719


>gi|161525427|ref|YP_001580439.1| 30S ribosomal protein S1 [Burkholderia multivorans ATCC 17616]
 gi|189349836|ref|YP_001945464.1| 30S ribosomal protein S1 [Burkholderia multivorans ATCC 17616]
 gi|221201261|ref|ZP_03574301.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2M]
 gi|221206285|ref|ZP_03579298.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2]
 gi|221213566|ref|ZP_03586540.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD1]
 gi|160342856|gb|ABX15942.1| ribosomal protein S1 [Burkholderia multivorans ATCC 17616]
 gi|189333858|dbj|BAG42928.1| small subunit ribosomal protein S1 [Burkholderia multivorans ATCC
           17616]
 gi|221166355|gb|EED98827.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD1]
 gi|221173594|gb|EEE06028.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2]
 gi|221179111|gb|EEE11518.1| 30S ribosomal protein S1 [Burkholderia multivorans CGD2M]
          Length = 570

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL   +     I  ++   ++     +  F P   +   P   +++     GK +  
Sbjct: 107 LEKALDNNELVTGTITGKVKGGMTVMVNGIRAFLPGSLVDTRP---VKDTTPYEGKTLEF 163

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + +  + E   I  G V  + D+GAF
Sbjct: 164 RVIKLDRKRN-----NVVLSRRAVIEATQGEERAKLLETLKEGA-IVNGVVKNITDYGAF 217

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++  RV   S+V+  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 218 VDL-GGIDGLLHITDIAWRRVRHPSEVLSVGQEVTAKILKFDQEKNRVSLGIKQLGDDPW 276

Query: 696 KPI 698
           + I
Sbjct: 277 EGI 279



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+          G+V  + D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWEGISRRYPSGTRLFGKVTNITDYGAFVEVESGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVMVLEIDEDRRRISLGMKQCKPNPWDD 365



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +   G  +G +  S++S +RV    +V+KEG
Sbjct: 448 DPFSNYVAMNDKGSIVDGVVKSVDAKGAVIALTGDIEGYLRASEISQDRVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DKVNAMVINIDRKSRGINLSIKAKD 532



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +     +  R+     + +KI  G +  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNF---KKGDKI-TGAIKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWSEAG--EEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDP 449


>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
 gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
          Length = 180

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR     R    + G +    GS+    G+T+ IV V  G RE ++   ++  +  
Sbjct: 33  VRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSV-FGPRESKK---AMMYSDV 88

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
                + ++   +T     +            +  +++   +        T+ + + + E
Sbjct: 89  GRLNCNVSYTTFST----PVRGQGSDCKEFSSMLHKSLEGAIMLETFPKTTVDVFALVLE 144

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           S GS     V  +SLAL DAG+ +   VAG+++
Sbjct: 145 SGGSDLSVIVSCASLALADAGIMMYDLVAGVSV 177



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 7/141 (4%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP    TG +   + G+  A +G T V+ +V   R  K    +    V       +    
Sbjct: 44  RPAYFRTGAV-NAAAGSAYAEFGNTKVIVSVFGPRESKKAMMYS--DVGRLNCNVSYTTF 100

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
                 + S   E   ++ + ++ +I  +     K    V   V++        +VS   
Sbjct: 101 STPVRGQGSDCKEFSSMLHKSLEGAI--MLETFPKTTVDVFALVLESGGSDLSVIVSC-- 156

Query: 134 ASAALMLSGLPFEGPVVGAQV 154
           AS AL  +G+     V G  V
Sbjct: 157 ASLALADAGIMMYDLVAGVSV 177


>gi|21702576|gb|AAM75973.1|AF481102_9 ribosomal protein S1 [Candidatus Tremblaya princeps]
          Length = 518

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V ++  S+ E   A    R +  + +   + +G +  + D+GAF+   G  DGL+HI+
Sbjct: 164 GNVVLSRRSVIERRQAENRNRLLASLGDG-DVVQGVIKNITDYGAFIDL-GGLDGLLHIT 221

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            +S  R+   S V+  GD + VK+L FD  + ++ L +K +  +    I+
Sbjct: 222 DISWRRIRHPSQVLSVGDRITVKVLKFDRTKTRVSLGLKQLHPDPWAGII 271



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKE 666
           +    I          +G+V  + D+G FV      +GL+H+S++  +     S    + 
Sbjct: 265 DPWAGIIGRYPAGSRVRGRVTNIADYGLFVEIERGIEGLLHVSEMHQKSKGTISLRHFRV 324

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
           G  V V +LD    R +I L MK
Sbjct: 325 GQYVNVTVLDVSKTRRRISLGMK 347


>gi|74209213|dbj|BAE24985.1| unnamed protein product [Mus musculus]
          Length = 1244

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 5/96 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY G+V  +M FG+FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 276 KHVDRPPPEEPAIGDIYNGKVTSIMQFGSFVQLEGLRKRWEGLVHISELRREGRVANVAD 335

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VV +G  V VK+L F    K  LSMK VDQ TG+ +
Sbjct: 336 VVSKGQRVKVKVLSFTGT-KTSLSMKDVDQETGEDL 370


>gi|83749856|ref|ZP_00946824.1| SSU ribosomal protein S1P [Ralstonia solanacearum UW551]
 gi|83723469|gb|EAP70679.1| SSU ribosomal protein S1P [Ralstonia solanacearum UW551]
          Length = 566

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 143 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 197

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 198 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 255

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 256 DQEKNRVSLGVKQLGEDPW 274



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 289 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 348

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 349 ISLGMKQCKANPWDD 363



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 340 LDIDEDKRRISLGMKQCKAN----PWDDFARNQKKGDKLSGQIKSITDFGVFIGLPGGID 395

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 396 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSGDP 447



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I    +  V   GA V      +G +  S++S++RV    +V+KEG
Sbjct: 446 DPFNNFISTNDKGSIVSVTIKAVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEG 505

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           +T+   +++ D + + I +S+K  D
Sbjct: 506 ETMTAMIVNIDRKSRNINVSIKAKD 530


>gi|299530284|ref|ZP_07043709.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
           S44]
 gi|298721655|gb|EFI62587.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
           S44]
          Length = 793

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 10/159 (6%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV------EQTGA-KV-NIDDDGTVKIASS 598
            E  P VE + +   +  + I   G+V++ +       E+ GA  + +I  +        
Sbjct: 583 PETYPVVEQIIVSTGKPVDQIMGRGEVLKSLKPEQFANEKFGAVTIKDILGELEKPGRDP 642

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               + A            +     +G V  V  FGAFV     +DGLVH+SQ+S + + 
Sbjct: 643 RPDFVVARFNDGVEDIKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIE 702

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              +VVK G  V VK+L+ D DR +I L+MK +D    +
Sbjct: 703 DAREVVKTGQIVKVKVLEVDVDRKRISLTMK-LDAAPAR 740


>gi|269103902|ref|ZP_06156599.1| transcription accessory protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163800|gb|EEZ42296.1| transcription accessory protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 776

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G +  V +FGAFV     +DGL+HIS LS + V+   +VVK GD V VK+++ D  
Sbjct: 652 MILEGVITNVTNFGAFVDVGVHQDGLIHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I +SM++ D+   +
Sbjct: 712 RKRIGMSMRLNDEPGAE 728


>gi|222445594|ref|ZP_03608109.1| hypothetical protein METSMIALI_01234 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435159|gb|EEE42324.1| hypothetical protein METSMIALI_01234 [Methanobrevibacter smithii
           DSM 2375]
          Length = 715

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  ++DFGAFV     +DGLVHISQL+   V    D+V  GD V VK+LD 
Sbjct: 643 EEGMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADRFVKHPLDIVSVGDIVDVKVLDV 702

Query: 678 D-DRGKIKLSM 687
           D  R +I+LSM
Sbjct: 703 DLARNRIQLSM 713


>gi|207725368|ref|YP_002255764.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum MolK2]
 gi|206590604|emb|CAQ37566.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum MolK2]
          Length = 562

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 139 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 194 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 252 DQEKNRVSLGVKQLGEDPW 270



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 285 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVTVLDIDEDKRR 344

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 345 ISLGMKQCKANPWDD 359



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 336 LDIDEDKRRISLGMKQCKAN----PWDDFARNQKKGDKLSGQIKSITDFGVFIGLPGGID 391

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 392 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSGDP 443



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I    +  V   GA V      +G +  S++S++RV    +V+KEG
Sbjct: 442 DPFNNFISTNDKGSIVSVTIKAVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEG 501

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           +T+   +++ D + + I +S+K  D
Sbjct: 502 ETMTAMIVNIDRKSRNINVSIKAKD 526


>gi|157676006|emb|CAP07844.1| putative transcriptional accessory protein [Neisseria weaveri]
          Length = 770

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------VEQTGAK-- 584
            E     +            ++ + I   +  ++IG   + I+ I       EQ G    
Sbjct: 561 KEPLDASAVHPEAYPVVAKMLDDLHI---KAADLIGNR-EKIKQIKPTSYTTEQFGLPTI 616

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A      +     +V  I +G V  V +FGAFV     +D
Sbjct: 617 MDILAELEKPGRDPRGEFQTATFAEGINEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 676

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+
Sbjct: 677 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDE 725


>gi|330501331|ref|YP_004378200.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina
           NK-01]
 gi|328915617|gb|AEB56448.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina
           NK-01]
          Length = 776

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 10/185 (5%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P VE +A    + IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVERIAQDTGRDIRSLIGDSAFLKRLDPA 601

Query: 580 QTGAKV-------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           +   +        +I  +              A  +      +  ++  + +G V  V +
Sbjct: 602 KFTDERFGLVTVGDILKELDKPGRDPRPEFKTAEFQEGVETLNDLKLGMVLEGVVTNVTN 661

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R +I LSM++ D
Sbjct: 662 FGAFVDIGVHQDGLVHISALSEKFIKDPHEAVKAGDVVKVKVMEVDIPRNRIALSMRMGD 721

Query: 692 QNTGK 696
               K
Sbjct: 722 TPGEK 726


>gi|260888130|ref|ZP_05899393.1| protein YhgF [Selenomonas sputigena ATCC 35185]
 gi|330840001|ref|YP_004414581.1| Tex-like protein [Selenomonas sputigena ATCC 35185]
 gi|260862159|gb|EEX76659.1| protein YhgF [Selenomonas sputigena ATCC 35185]
 gi|329747765|gb|AEC01122.1| Tex-like protein [Selenomonas sputigena ATCC 35185]
          Length = 727

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             +++   +  G   +R I++           G              A   +       +
Sbjct: 599 DAEKLAEELAAGTPTMRDIIDALKKP------GRDPREDLPAPLTRQAIVKL----SDIK 648

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              + +G V  + DFG FV       GL+HIS+LS +RV    DVV  GD V V ++  D
Sbjct: 649 AGAVMRGTVRNITDFGVFVDIGIKTAGLIHISELSKKRVKHPLDVVSVGDIVNVMVIKVD 708

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG+I LS+K V +   
Sbjct: 709 EERGRIGLSLKQVPKEAA 726


>gi|224826389|ref|ZP_03699491.1| ribosomal protein S1 [Lutiella nitroferrum 2002]
 gi|224601490|gb|EEG07671.1| ribosomal protein S1 [Lutiella nitroferrum 2002]
          Length = 567

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL+        I  ++   L+     +  F P      +    +++     GK +  
Sbjct: 102 LEEALEAGTIMSGLISGKVKGGLTVMVNGIRAFLPGSL---VDVRPVKDTTPYEGKQVEF 158

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E    +  + E   + KG V  + D+GAF
Sbjct: 159 KVIKLDRKRN-----NVVVSRRAVLEETLGEERKALLETLCEGA-VVKGIVKNITDYGAF 212

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++ ++ L +K +  +  
Sbjct: 213 VDL-GGIDGLLHITDLAWRRVKHPSEVLAVGDEVEAKVLKFDQEKNRVSLGLKQLGDDPW 271



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +L+ D DR +
Sbjct: 286 GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQVGDEVEVMILEIDEDRRR 345

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 346 ISLGMKQCLANPWDD 360



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P ++  V   G +V   I+E       ID+D                           
Sbjct: 320 VHPSKVVQV---GDEVEVMILE-------IDEDRRRISLGMKQCLAN----PWDDFAATY 365

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +      G +  + DFG FV   G  DGLVH+S LS            K+GD V   +L 
Sbjct: 366 KKGDKLVGAIKSITDFGVFVGLPGGIDGLVHLSDLSWSETGEDAVRKFKKGDEVEAVVLS 425

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D ++ +I L +K ++ + 
Sbjct: 426 IDVEKERISLGIKQLEGDP 444



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   + KG V  +   GA +   G  +G +  S++S +RV      +KEG
Sbjct: 443 DPFNNYVAMNDKGALVKGTVKSLDAKGAVIQLDGDVEGYLRASEVSRDRVEDIRTHLKEG 502

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD-QNTG 695
           D V   ++  D + + I LS+K  D Q  G
Sbjct: 503 DEVEAVIIAVDRKSRNISLSIKAKDAQEEG 532


>gi|311104916|ref|YP_003977769.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans A8]
 gi|310759605|gb|ADP15054.1| ribosomal protein S1 [Achromobacter xylosoxidans A8]
          Length = 576

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 81  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEKALENGELVTGTITGKVKGGLTVMTN 140

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 141 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 192

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 193 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 250

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 251 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 282



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 280 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 340 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 371



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 348 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D D+ +I L +K ++ + 
Sbjct: 404 GLVHLSDLSWTETGE-EAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDP 455



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 21/242 (8%)

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
                L+D     +    ++  V  ++   T   +D +        + + + +    R  
Sbjct: 297 GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRR 356

Query: 531 ILNEMSKVLSESRLQLGEFTPR----------VEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           I   M +       +      R          +    +       + G+         E 
Sbjct: 357 ISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTET 416

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQVVKV 630
               V     G    A     + +  R          +   +     +   +  G +  V
Sbjct: 417 GEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFNNFVATFDKGAVVPGTIKSV 476

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
              GA V      +G +  S++S+ RV   + V+  G+ +   +++ D + + I+LS+K 
Sbjct: 477 EAKGAVVTLSVDVEGYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKA 536

Query: 690 VD 691
            D
Sbjct: 537 RD 538


>gi|293604177|ref|ZP_06686585.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
 gi|292817402|gb|EFF76475.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
 gi|317402985|gb|EFV83524.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans C54]
          Length = 575

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 80  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEKALENGELVTGTITGKVKGGLTVMTN 139

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 140 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 191

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 192 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 249

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 250 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 281



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 279 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 338

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 339 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 370



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 347 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 402

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D D+ +I L +K ++ + 
Sbjct: 403 GLVHLSDLSWTETGE-EAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDP 454



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 21/242 (8%)

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
                L+D     +    ++  V  ++   T   +D +        + + + +    R  
Sbjct: 296 GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRR 355

Query: 531 ILNEMSKVLSESRLQLGEFTPR----------VEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           I   M +       +      R          +    +       + G+         E 
Sbjct: 356 ISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTET 415

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQVVKV 630
               V     G    A     + +  R          +   +     +   +  G +  V
Sbjct: 416 GEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDPFNNFVATFDKGAVVPGTIKSV 475

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
              GA V      +G +  S++S+ RV   + V+  G+ +   +++ D + + I+LS+K 
Sbjct: 476 EAKGAVVTLSVDVEGYLRASEISSGRVEDATTVLTAGENIEAMIVNIDRKTRSIQLSIKA 535

Query: 690 VD 691
            D
Sbjct: 536 RD 537


>gi|207743935|ref|YP_002260327.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum IPO1609]
 gi|300704750|ref|YP_003746353.1| 30S ribosomal protein S1 [Ralstonia solanacearum CFBP2957]
 gi|206595337|emb|CAQ62264.1| 30s ribosomal subunit protein s1 [Ralstonia solanacearum IPO1609]
 gi|299072414|emb|CBJ43759.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum CFBP2957]
          Length = 562

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 139 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 194 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 252 DQEKNRVSLGVKQLGEDPW 270



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 285 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 344

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 345 ISLGMKQCKANPWDD 359



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 336 LDIDEDKRRISLGMKQCKAN----PWDDFARNQKKGDKLSGQIKSITDFGVFIGLPGGID 391

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 392 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSGDP 443



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I    +  V   GA V      +G +  S++S++RV    +V+KEG
Sbjct: 442 DPFNNFISTNDKGSIVSVTIKAVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEG 501

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           +T+   +++ D + + I +S+K  D
Sbjct: 502 ETMTAMIVNIDRKSRNINVSIKAKD 526


>gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 503

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 11/183 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           + +  ++ A ++    +  I        +   L    F P  ++   P +     IG   
Sbjct: 108 VDKQSILEAFEKKIPVQGKIYTPTKGGFNVDILGARAFCPVSQVSLHPVEDSSQFIGKTL 167

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
             +          +   ++    + S    E    +E   +     +V  I KG+V+++ 
Sbjct: 168 DFL---------VIECSENCRRIVVSHRQLEEMREQERKETALAKLKVGDIVKGKVLRMT 218

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            FGAF+   G  +GL+H+S++S + + +  D +K+G  + VK+LD     KI LS KV+ 
Sbjct: 219 TFGAFIDL-GGIEGLMHVSEISWQHIVRPQDELKKGQEIEVKILDI-KGEKIALSRKVLL 276

Query: 692 QNT 694
           ++ 
Sbjct: 277 EDP 279



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 88/194 (45%), Gaps = 13/194 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +    +Q ++       ++  ++    L++  F        I    I  ++ +  
Sbjct: 183 VSHRQLEEMREQERKETALAKLKVGDIVKGKVLRMTTFGA-----FIDLGGIEGLMHVSE 237

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV--- 628
              + IV +   ++    +  VKI      +I  +R+++        + ++++G ++   
Sbjct: 238 ISWQHIV-RPQDELKKGQEIEVKILDIKGEKIALSRKVLLEDPFEVAMKELHEGDIINCR 296

Query: 629 --KVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
             ++ +FGAF       +GL+ IS++S  R ++   D+VKEGD V V++L  D+   KI 
Sbjct: 297 VLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDIVKEGDWVQVQILRIDEDTHKIS 356

Query: 685 LSMKVVDQNTGKPI 698
           LS+K ++ +    I
Sbjct: 357 LSLKALEADPWDKI 370


>gi|46579880|ref|YP_010688.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602654|ref|YP_967054.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|46449296|gb|AAS95947.1| ribosomal protein S1, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562883|gb|ABM28627.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311234119|gb|ADP86973.1| RNA binding S1 domain protein [Desulfovibrio vulgaris RCH1]
          Length = 487

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 119/307 (38%), Gaps = 38/307 (12%)

Query: 420 PYTL--RIVSEITESDGS----SSMATVCGSSLAL---MDAGVPISKPVAGIAMGLVKDG 470
           PY +  R+   +T  +G     S   +  G +  L    D+GVP+   V G   G   + 
Sbjct: 74  PYAVGDRVDLYVTAVNGQEIRLSKGLSGQGGAAVLEEARDSGVPVEGRVTGTCKGGY-NV 132

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D     +   G +  L  ++   +        +   ++  G   NI+V      +R R  
Sbjct: 133 DVLRKRAFCPGSQIDLHQLEDAESVVGQTFQFLVTRVEQHG--RNIVVSRRALLERERDA 190

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
            L    + + E    L     R+       +     I  G   +  I E T ++V   D+
Sbjct: 191 ALATFLEGVKEG-DVLEGTVTRLAPFGAFVE-----IAPGVDGMVHISELTWSRVAQADE 244

Query: 591 G------------------TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
                                K    SL+  +A  +   ++ D  E +++   +VV++  
Sbjct: 245 AVSVGDRVRVKVLGIGEAPKGKGTRISLSVKQAGGDPWETVGDRLEQDQVVPAKVVRLAP 304

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           FGAFV      +GLVH+S++S   RV K  ++V  GD V VK+ + D  + +I LS++  
Sbjct: 305 FGAFVEVLPGVEGLVHVSEMSWTRRVNKPEEIVAVGDAVNVKIKELDVAKRRISLSLRDA 364

Query: 691 DQNTGKP 697
           + +    
Sbjct: 365 EGDPWAD 371



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 103/283 (36%), Gaps = 24/283 (8%)

Query: 426 VSEITESD-GSSSM----ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
            +E+ E+  G +        +  + +A+ D  V     VA  +          +  +D S
Sbjct: 17  FAELLEAHAGGTRNVRPGDRISAAIVAITDDSV----FVATGSKVDGVIDRRELEEADGS 72

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
                   +D  V   +     +   +   G    ++  A          +        +
Sbjct: 73  LPYAVGDRVDLYVTAVNGQEIRLSKGLSGQG-GAAVLEEARDSGVPVEGRVTGTCKGGYN 131

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
              L+   F P  +I     +   +V+G   + +   VEQ G  +       V   +   
Sbjct: 132 VDVLRKRAFCPGSQIDLHQLEDAESVVGQTFQFLVTRVEQHGRNI------VVSRRALLE 185

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            E +AA               + +G V ++  FGAFV      DG+VHIS+L+  RVA+ 
Sbjct: 186 RERDAALATFLEGVKE---GDVLEGTVTRLAPFGAFVEIAPGVDGMVHISELTWSRVAQA 242

Query: 661 SDVVKEGDTVWVKLLDFDD--RG---KIKLSMKVVDQNTGKPI 698
            + V  GD V VK+L   +  +G   +I LS+K    +  + +
Sbjct: 243 DEAVSVGDRVRVKVLGIGEAPKGKGTRISLSVKQAGGDPWETV 285


>gi|90581399|ref|ZP_01237194.1| hypothetical protein VAS14_21752 [Vibrio angustum S14]
 gi|90437376|gb|EAS62572.1| hypothetical protein VAS14_21752 [Vibrio angustum S14]
          Length = 774

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G +  V +FGAFV     +DGLVHIS LS + V+   +VVK GD V VK+++ D  
Sbjct: 652 MVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQN 693
           R +I +SM++ D+ 
Sbjct: 712 RKRIGMSMRLSDEP 725


>gi|28867558|ref|NP_790177.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971032|ref|ZP_03399153.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301385595|ref|ZP_07234013.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058821|ref|ZP_07250362.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302132150|ref|ZP_07258140.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850793|gb|AAO53872.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924268|gb|EEB57842.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1]
 gi|331014861|gb|EGH94917.1| S1 RNA binding domain protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 773

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E  +            I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGVEDLKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEIDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|73541033|ref|YP_295553.1| RNA binding S1 [Ralstonia eutropha JMP134]
 gi|72118446|gb|AAZ60709.1| RNA binding S1 [Ralstonia eutropha JMP134]
          Length = 802

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   I +G V  V  FGAFV     +DGLVHIS LS + V    +VVK G  V 
Sbjct: 673 EDVKDLQPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVK 732

Query: 672 VKLLDFDD-RGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 733 VKVMEVDVMRNRIGLSMRLDDEP 755


>gi|239997047|ref|ZP_04717571.1| Transcriptional accessory protein [Alteromonas macleodii ATCC
           27126]
          Length = 782

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +      +  +   I +G V  V +FGAFV     +DG
Sbjct: 614 DILKELDKPGRDPRPEFKTAAFKEGVETINDLKPGMILEGVVSNVANFGAFVDVGVHQDG 673

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           LVHIS L+ + ++   +VVK GD V VK+L+ D  R +I  +M++ D
Sbjct: 674 LVHISALTNKFISDPREVVKAGDIVKVKVLEVDVPRKRISFTMRLDD 720


>gi|212711647|ref|ZP_03319775.1| hypothetical protein PROVALCAL_02722 [Providencia alcalifaciens DSM
           30120]
 gi|212685749|gb|EEB45277.1| hypothetical protein PROVALCAL_02722 [Providencia alcalifaciens DSM
           30120]
          Length = 776

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V VK+LD D  
Sbjct: 651 MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKTGDIVKVKVLDVDIA 710

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ +Q
Sbjct: 711 RKRIALTMRLDEQ 723


>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
           laibachii Nc14]
          Length = 251

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R    QVG++    GS+      T+ I  V  G R + +         +   +    
Sbjct: 31  DQIRATYMQVGVIHNASGSAYVELQGTKVICAV-YGPRNNPRGRRKFHEGGQ--LICDVK 87

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F P A    +R       EI   ++  +A+ P +         +     I +SDGS    
Sbjct: 88  FAPFAERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVVILQSDGSELAT 147

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            +  +SLAL DA + +   V     G+V D     +L D+   E+ +   +  +A   S 
Sbjct: 148 AIMCASLALADAAIEMRDLVTACNAGIVDDK----LLVDLCTSEERMSQGNTMLAFLPS- 202

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           +      M+ G ++   +   +         +LNE  KV    +++
Sbjct: 203 LQKSTFVMQQGTMTHAQVEEMIDVCSIACSSVLNESMKVALTQKVE 248



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 72/201 (35%), Gaps = 19/201 (9%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKI 73
           ++ G I   + G+       T V+  V   R+   G+  F     L  + +   +A    
Sbjct: 38  MQVGVI-HNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGGQLICDVKFAPFA---- 92

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSM 131
                 R +    +EI +S+++ +++ P     K  K      + ++Q D        ++
Sbjct: 93  -ERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVVILQSDGSELA--TAI 149

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-----LDLFVSGTQDAVL 186
           + AS AL  + +     V       ++ + +++    E++ S     L    S  +   +
Sbjct: 150 MCASLALADAAIEMRDLVTACNAGIVDDKLLVDLCTSEERMSQGNTMLAFLPSLQKSTFV 209

Query: 187 MVELEANQLSEDVVLDAIIFG 207
           M +        + ++D     
Sbjct: 210 MQQGTMTHAQVEEMIDVCSIA 230


>gi|324325614|gb|ADY20874.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 382

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + I 
Sbjct: 246 DADTQRISLSIKAAQPGPWENIA 268



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +I    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENIAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEEDDLV-LSKRAVDAE 90


>gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 478

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I  +  AK+   D     +  S  A +E  +  +R+      +  ++  G V  +++FG
Sbjct: 161 YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++
Sbjct: 221 AFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDMDRERVSLSLKATQED 279

Query: 694 TGK 696
             +
Sbjct: 280 PWQ 282



 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VVK G
Sbjct: 279 DPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           + V+VK++D D +R +I LS+K  ++
Sbjct: 339 EEVFVKVIDIDLERRRISLSLKQANE 364



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      DVV  GD +   +L   D 
Sbjct: 34  DIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPEDVVAVGDQIEALVLQKEDK 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 94  EGRLLLSKKRAQ 105


>gi|229846658|ref|ZP_04466766.1| transcription elongation factor GreB [Haemophilus influenzae
           7P49H1]
 gi|229810751|gb|EEP46469.1| transcription elongation factor GreB [Haemophilus influenzae
           7P49H1]
          Length = 770

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNSG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|255659244|ref|ZP_05404653.1| RNA-binding protein [Mitsuokella multacida DSM 20544]
 gi|260848698|gb|EEX68705.1| RNA-binding protein [Mitsuokella multacida DSM 20544]
          Length = 152

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + +FGAFV     + GL+HIS+++   V    D + E D V VK+L  DDRGKI LS+
Sbjct: 14  TGITNFGAFVELPEGKTGLIHISEVADVYVKDVHDFLSEKDKVKVKVLSIDDRGKIALSI 73

Query: 688 KVVDQNTGK 696
           K + +   +
Sbjct: 74  KQLQEKKPE 82


>gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 [Pediococcus pentosaceus ATCC 25745]
 gi|116102991|gb|ABJ68134.1| SSU ribosomal protein S1P [Pediococcus pentosaceus ATCC 25745]
          Length = 402

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    + ++    G+ ++  + +        +D  + ++  ++   E   +    +  + 
Sbjct: 147 IENRFVDDLNAYKGQTLKVKIIEVKP-----EDNRLILSHKAVLNAEREAKRGEVLASIK 201

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G+V ++ +FGAFV   G  DGLVHIS++S +RV K SDV+K G+ V VK+L  
Sbjct: 202 EG-DVVTGKVARLTNFGAFVDL-GGIDGLVHISEISYQRVDKPSDVLKAGEEVQVKVLSV 259

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++ ++ LS+K         I
Sbjct: 260 DAEKERVSLSIKQTQPGPWDNI 281



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            D+  +V+  G        E+   KV   D    +++ S         + I         
Sbjct: 239 VDKPSDVLKAG--------EEVQVKVLSVDAEKERVSLSIKQTQPGPWDNIEENAPE--- 287

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             +  G+V ++ DFGAFV      +GLVHISQ+S + +A  +DV+KEG  + VK+L+   
Sbjct: 288 GAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPADVLKEGQDIKVKVLEVHP 347

Query: 680 -RGKIKLSMKVVDQNT 694
              ++ LS+K +++  
Sbjct: 348 AEHRLALSIKALEEAP 363



 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDF-GAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  +  +V  +  G+V+ + D     V   G   +G+V + +LST+ +   SD VK GD 
Sbjct: 17  NSVEEVKVGDVVTGEVLDIDDDRQVIVGIQGAGVEGVVPLRELSTQHIDNISDEVKIGDE 76

Query: 670 VWVKLLDF--DDR--GKIKLSMKVV 690
           + + ++    DD+  G   LS K +
Sbjct: 77  LELVVISRIGDDKEGGSYLLSRKRL 101


>gi|163856200|ref|YP_001630498.1| 30S ribosomal protein S1 [Bordetella petrii DSM 12804]
 gi|163259928|emb|CAP42229.1| 30S ribosomal protein S1 [Bordetella petrii]
          Length = 575

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 80  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEKALENGELVTGTITGKVKGGLTVMTN 139

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 140 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 191

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 192 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 249

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 250 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 281



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 279 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 338

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 339 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 370



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 347 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 402

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD +   +L  D D+ +I L +K ++ + 
Sbjct: 403 GLVHLSDLSWT--ESGEEAVRNFKKGDEIEAVVLGIDTDKERISLGIKQLEGDP 454



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G +  V   GA +      +G +  S++S+ RV   + V+K G
Sbjct: 453 DPFNNFVATYDKGAVVPGVIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAG 512

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +   +++ D + + I+LS+K  D       +
Sbjct: 513 ENIEAMIVNIDRKTRSIQLSIKARDNAETADTI 545


>gi|309389058|gb|ADO76938.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
           praevalens DSM 2228]
          Length = 721

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 101/233 (43%), Gaps = 10/233 (4%)

Query: 470 GDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRL 529
            D FI L  +S       + D      +  +  + ++ + G +  +      ++A     
Sbjct: 361 TDGFIPLRHLSHRTVEDAN-DIVSMDEEIEVVILTLEDEEGNMVLSKKQAEYEKAWEKIE 419

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMA--IPPDQIRNVIGMGGKVIRGIVEQTGAK-VN 586
              N    + +E   ++         +   IP   +   IG    +   + E    K + 
Sbjct: 420 EAYNNEEIIEAEVTKEVKGGLVVDVGVRGFIPASHVA--IGYVDDLKDYVGESLRLKVIE 477

Query: 587 ID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           ++ D+  V ++   + E E A +   ++  + E   + +G V K++DFGAF+   G  +G
Sbjct: 478 VERDNNNVVLSHKKVLEKERAAKKEETLASLEEGQTV-EGTVTKLVDFGAFIDL-GGIEG 535

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           L+HIS++S  R+   ++V+ EG+ V VK+L  + +  +I L +K +  +  + 
Sbjct: 536 LLHISEMSWGRIESPAEVLTEGEKVEVKVLGVNKEEERISLGLKQLLADPWEE 588



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +     ++ +G++ K++DFGAF+      +GL+HISQLS   V  T +VV  G
Sbjct: 584 DPWEEFAEKHYEGEVIEGKITKLVDFGAFMEVEKGIEGLIHISQLSHRHVKTTDEVVSVG 643

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D    K+++ D D+ ++ LS+K +++  
Sbjct: 644 DVKEAKIINIDADQERVGLSLKELEEKP 671



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRG 681
             G VV++ + G +V      DG + +  LS   V   +D+V   + + V +L   D+ G
Sbjct: 341 VTGTVVEINENGVYVDVNYKTDGFIPLRHLSHRTVEDANDIVSMDEEIEVVILTLEDEEG 400

Query: 682 KIKLSMKVVD-QNTGKPI 698
            + LS K  + +   + I
Sbjct: 401 NMVLSKKQAEYEKAWEKI 418


>gi|241662463|ref|YP_002980823.1| 30S ribosomal protein S1 [Ralstonia pickettii 12D]
 gi|309781045|ref|ZP_07675783.1| ribosomal protein S1 [Ralstonia sp. 5_7_47FAA]
 gi|240864490|gb|ACS62151.1| ribosomal protein S1 [Ralstonia pickettii 12D]
 gi|308920111|gb|EFP65770.1| ribosomal protein S1 [Ralstonia sp. 5_7_47FAA]
          Length = 562

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 139 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 194 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 252 DQEKNRVSLGVKQLGEDPW 270



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 285 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 344

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 345 ISLGMKQCKANPWDD 359



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 336 LDIDEDKRRISLGMKQCKAN----PWDDFARNHKKGDKLAGQIKSITDFGVFIGLPGGID 391

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 392 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSGDP 443



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I +  +  V   GA V      +G +  S++S++RV    +V+KEG
Sbjct: 442 DPFNNFVSTNDKGSIVQVTIKTVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEG 501

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           +T+   +++ D + + I +S+K  D
Sbjct: 502 ETMTAMIVNIDRKSRNINVSIKAKD 526


>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
           troglodytes]
          Length = 235

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+   L  DG   ++L   S  E     +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDSDGT--LVLDPTSKQEKEARAV 180



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 148 MRALFCGVTCALDSDGTLVLDPTSKQEK 175


>gi|302866611|ref|YP_003835248.1| Tex-like protein-like [Micromonospora aurantiaca ATCC 27029]
 gi|302569470|gb|ADL45672.1| Tex-like protein-like [Micromonospora aurantiaca ATCC 27029]
          Length = 815

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 19/151 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++   G+ +R ++ ++       A   +DD   +   +  LAE+E      R   R+
Sbjct: 579 VRRILSSTGQDLRALIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGRDPRPEFRT 638

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T V  V KI         +G V  V  FGAFV     +DGLVH+S +S   V    DVV
Sbjct: 639 ATFVEGVEKISDLQPGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHTFVKDPRDVV 698

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           K GD V V++LD D  R +I L++++ D+  
Sbjct: 699 KSGDVVKVRVLDVDVPRKRISLTLRLDDEAP 729


>gi|258544890|ref|ZP_05705124.1| histidine triad domain-containing protein [Cardiobacterium hominis
           ATCC 15826]
 gi|258519810|gb|EEV88669.1| histidine triad domain-containing protein [Cardiobacterium hominis
           ATCC 15826]
          Length = 769

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+   V    D+VK GD V VK+L+ 
Sbjct: 657 QPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALADRYVQDPRDIVKAGDVVKVKVLEV 716

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +R +I L+M++ D  T 
Sbjct: 717 DAERKRIALTMRLDDDATA 735


>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
          Length = 233

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 26  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 72

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+        ++ +V ++    GS     +
Sbjct: 73  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCL 132

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
             + +AL+DAGVP+     G+   L  DG+  ++L   +  E    
Sbjct: 133 NAACMALVDAGVPMRALFCGVTCALDPDGN--LVLDPTTKQEKEAR 176



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 40  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 85

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 86  GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVP 145

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 146 MRALFCGVTCALDPDGNLVLDPTTKQEK 173


>gi|119897950|ref|YP_933163.1| transcription accessory protein [Azoarcus sp. BH72]
 gi|119670363|emb|CAL94276.1| transcription accessory protein [Azoarcus sp. BH72]
          Length = 773

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V +FGAFV     +DGLVHIS L+   V     VVK G  V VK+L+ 
Sbjct: 648 EPGMMLEGVVTNVTNFGAFVDIGVHQDGLVHISALAERFVKDPHSVVKAGQVVKVKVLEV 707

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M++ D+   K
Sbjct: 708 DIPRNRIALTMRMGDEAAPK 727


>gi|146305398|ref|YP_001185863.1| RNA-binding S1 domain-containing protein [Pseudomonas mendocina
           ymp]
 gi|145573599|gb|ABP83131.1| RNA binding S1 domain protein [Pseudomonas mendocina ymp]
          Length = 774

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 10/185 (5%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P VE +A    + IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVERIAQDTGRDIRSLIGDSAFLKRLDPA 601

Query: 580 QTGAKV-------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           +   +        +I  +              A  +      +  ++  + +G V  V +
Sbjct: 602 KFTDERFGLLTVGDILKELDKPGRDPRPEFKTAEFQEGVETLNDLKLGMVLEGVVTNVTN 661

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R +I LSM++ D
Sbjct: 662 FGAFVDIGVHQDGLVHISALSEKFIKDPHEAVKAGDVVKVKVMEVDIPRNRIALSMRMGD 721

Query: 692 QNTGK 696
               K
Sbjct: 722 TPGEK 726


>gi|312110427|ref|YP_003988743.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
 gi|311215528|gb|ADP74132.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 387

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E  ++ +G V ++ DFG FV   G  DGLVHISQLS  RVA  SDVV+EG+TV VK+L
Sbjct: 189 RLETGQVLEGIVRRITDFGVFVDVGGF-DGLVHISQLSHTRVAHPSDVVQEGETVKVKVL 247

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPIV 699
             D + G++ LS+K    +  + I 
Sbjct: 248 SVDEENGRVSLSIKEALPSPWEGIA 272



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    KV   D+   +++ S    +         I +      I  G+V +++ FGAFV 
Sbjct: 240 ETVKVKVLSVDEENGRVSLSIKEALP---SPWEGIAEKIAPGDIVTGKVKRLVPFGAFVE 296

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
                +GLVHISQ+ST+R+    +V+KEG+ V  K+LD  +   +I LS++ + +  
Sbjct: 297 IFPGIEGLVHISQISTKRIGTPHEVLKEGEEVKAKVLDVSEAERRISLSIRDLIEEE 353


>gi|240146046|ref|ZP_04744647.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia
           intestinalis L1-82]
 gi|257201862|gb|EEV00147.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Roseburia
           intestinalis L1-82]
 gi|291539046|emb|CBL12157.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4]
          Length = 374

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             +V I D    KIA S       A        +   V  + KG+V ++ DFGAFV    
Sbjct: 242 HVRVFIKDINDTKIALSMK---FPAENPWNGAAEKYAVGNVVKGKVARMTDFGAFVELAP 298

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
             D L+H+SQ++ E + K SDV+K G  +  K++DF+ D  KI LS+K +
Sbjct: 299 GVDALLHVSQIAKEHIEKPSDVLKVGQEIEAKIVDFNEDEKKISLSIKAL 348



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 11/179 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +     +   +   L     +   F P      +     +++     + I  
Sbjct: 100 LEEAFENKEVLTAKVAQVLDGGLCVIVDETRVFIPASL---VSDSYEKDLSKYKDQDIEF 156

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           ++ +   K          I       +    E  + +    +V  + +G V  V DFGAF
Sbjct: 157 VISEFNPKR------RRIIGDRKQLLVAKKLEQQKELFAKIKVGDVMEGTVKNVTDFGAF 210

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +   GA DGL+HIS++S  RV     V   GD V V + D +D  KI LSMK   +N  
Sbjct: 211 IDLGGA-DGLLHISEMSWGRVESPKKVFNVGDHVRVFIKDINDT-KIALSMKFPAENPW 267



 Score = 41.4 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  ++ + E     + +V  G
Sbjct: 8   QMLEESFKTIRNGEVVEGTVIDVKPDEIVLNIGYKSDGIITRNEYTNEANVDLTTLVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +    G
Sbjct: 68  DTMEAKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|319424533|gb|ADV52607.1| Tex-like protein [Shewanella putrefaciens 200]
          Length = 813

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++ 
Sbjct: 682 KPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVMEV 741

Query: 678 D-DRGKIKLSMK---VVDQNTGK 696
           D +R +I LSM+    ++QN  +
Sbjct: 742 DVERRRIGLSMRLDEAIEQNNAQ 764


>gi|15896097|ref|NP_349446.1| transcription accessory protein [Clostridium acetobutylicum ATCC
           824]
 gi|15025886|gb|AAK80786.1|AE007781_9 Transcription accessory protein TEX, RNA-binding protein containing
           S1 domain [Clostridium acetobutylicum ATCC 824]
          Length = 718

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 594 KIASSSLAEIEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K       E+               +      G V  V DFGAFV     +DGLVHISQL
Sbjct: 621 KPGRDPREEMPKPILKTGIMDIKQLKSGMTLMGTVRNVADFGAFVDIGVHQDGLVHISQL 680

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           S   V    DVVK GD V V++L+ D+ R +I L+MK
Sbjct: 681 SDSFVKHPLDVVKVGDIVEVRILEVDEKRNRISLTMK 717


>gi|261349855|ref|ZP_05975272.1| protein YhgF [Methanobrevibacter smithii DSM 2374]
 gi|288860638|gb|EFC92936.1| protein YhgF [Methanobrevibacter smithii DSM 2374]
          Length = 715

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  ++DFGAFV     +DGL+HISQL+ + V    D+V  GD V VK+LD 
Sbjct: 643 EEGMIMQGTVRNIVDFGAFVDIGVHQDGLIHISQLADKFVKHPLDIVSVGDIVDVKVLDV 702

Query: 678 D-DRGKIKLSM 687
           D  R +I+LSM
Sbjct: 703 DLARNRIQLSM 713


>gi|167038148|ref|YP_001665726.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116557|ref|YP_004186716.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856982|gb|ABY95390.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929648|gb|ADV80333.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 712

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEV 619
           ++I     +G   +  IV +             K       ++         +T +  + 
Sbjct: 594 EKISEEYDIGLPTLYDIVSELK-----------KPGRDPREDLPKPILRSDVMTINELKP 642

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
                G V  V DFG FV      DGLVHIS++S   +    DVV  GD V V++L  D 
Sbjct: 643 GMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDI 702

Query: 679 DRGKIKLSMK 688
           +R +I LSMK
Sbjct: 703 ERNRISLSMK 712


>gi|325262655|ref|ZP_08129392.1| 40S ribosomal protein S1 [Clostridium sp. D5]
 gi|324032487|gb|EGB93765.1| 40S ribosomal protein S1 [Clostridium sp. D5]
          Length = 231

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D      + S+     E  ++         +   + +G V  + ++GAF+       
Sbjct: 95  IDVDQANNRLVLSAREILKEKEQQARAEQIASIKTGTVMEGTVETLQNYGAFIKLDNGLS 154

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           GLVHISQ+S +R+    +V+K GDTV VK++   + GKI LSMK +++N  +
Sbjct: 155 GLVHISQISQKRIKTPGEVLKVGDTVKVKVIGIKE-GKISLSMKALEENQEE 205


>gi|312898940|ref|ZP_07758328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           micronuciformis F0359]
 gi|310620102|gb|EFQ03674.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           micronuciformis F0359]
          Length = 660

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           E    KV   D+   ++  S  A +E  RE  R+      E   + +G VVKVM +GAF+
Sbjct: 431 ETFTVKVIDMDEHKNRLVLSRKAVLEVEREKKRAEVLKTIEEGSVVEGTVVKVMPYGAFI 490

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  +GL+HIS +S +R+    DV++ G+ V V +  FD +R +I LSMK + +N  
Sbjct: 491 DL-GGVEGLLHISDISWKRINAVEDVLEVGEKVEVLVQKFDEERNRISLSMKALQKNPW 548



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 17/199 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IR 575
           M     +    R  +L    +      L+  E    VE   +        I +GG   + 
Sbjct: 440 MDEHKNRLVLSRKAVLEVEREKKRAEVLKTIEEGSVVEGTVVKVMPYGAFIDLGGVEGLL 499

Query: 576 GIVEQTGAKVNIDDD------------GTVKIASSSLAEIEAA--REMIRSITDVPEVNK 621
            I + +  ++N  +D                   + ++    A  +       +  EV  
Sbjct: 500 HISDISWKRINAVEDVLEVGEKVEVLVQKFDEERNRISLSMKALQKNPWIVAVEKFEVGD 559

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG+V K++ FGA +       GL+H+S+L+ +R A   D++  GD + VK++  D D+
Sbjct: 560 VVKGEVKKLLPFGAILAIDPELQGLLHVSELTDKRGAVVKDLIAVGDVLDVKIIGIDTDK 619

Query: 681 GKIKLSMKVVDQN-TGKPI 698
            KI LS+  ++++ T + I
Sbjct: 620 KKISLSVVAIEEDETAREI 638



 Score = 46.4 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 15/139 (10%)

Query: 556 MAIP-PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           MA+P P++  + + +G ++   I        NI ++G++ ++           E  + + 
Sbjct: 331 MAVPAPEKASDFVQVGQELTVEIAN------NIKEEGSIVVSLVR----MKKVEDWKEVR 380

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E +++ +    +    G  V     R G + +SQ     V    D +  G+T  VK+
Sbjct: 381 AAFEADELVECVGKETNKAGLVVAIKSLR-GFIPLSQGDVRFVKSL-DYL-VGETFTVKV 437

Query: 675 LDFDD-RGKIKLSMKVVDQ 692
           +D D+ + ++ LS K V +
Sbjct: 438 IDMDEHKNRLVLSRKAVLE 456



 Score = 44.1 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL- 675
           P+   +  G V+ V D  A+V      + ++   +++     K SD V+ G  + V++  
Sbjct: 296 PKKGDVVTGTVISVNDDAAYVSIGTKAEAVLPKKEMAVPAPEKASDFVQVGQELTVEIAN 355

Query: 676 DFDDRGKIKLS---MKVVD 691
           +  + G I +S   MK V+
Sbjct: 356 NIKEEGSIVVSLVRMKKVE 374


>gi|158425343|ref|YP_001526635.1| 30S ribosomal protein S1 [Azorhizobium caulinodans ORS 571]
 gi|158332232|dbj|BAF89717.1| ribosomal protein S1 [Azorhizobium caulinodans ORS 571]
          Length = 563

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E   I +G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRTVLEETRAEQRHELVQNLEEGQAI-EGVVKNITDYGAFVDL-GGIDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 228 DIAWRRVNHPTEVLNIGQTVKVKIIKINHETHRISLGMKQLLGDPWEGI 276



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V   +KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 271 DPWEGIEAKYPVEARFKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 331 SQEVEVQVLEVDPAKRRISLGLKQTLQNPWE 361



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLNIGQTVKVKII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +       I   M ++L +    +    P           I +      +  G + +  +
Sbjct: 253 KINHETHRISLGMKQLLGDPWEGIEAKYPVEARFKGRVTNITDYGAFVELEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKI 622
            E +  K N+     V  +     ++                  +    +  +      +
Sbjct: 313 SEMSWTKKNVHPGKIVSTSQEVEVQVLEVDPAKRRISLGLKQTLQNPWEAFGEKYAPGAV 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  D  ++GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEFRKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K +  + 
Sbjct: 433 ERISLGIKQLAGDP 446



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +     +   I   +V  V D G  V   G      +  S+L+ +R  +  +    G+ +
Sbjct: 448 ADAGDVKKGSIVTCEVTDVKDGGIEVKLTGTDLSTFIKRSELARDRNDQRPERFSVGEKL 507

Query: 671 WVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
             ++  FD +  K+++S+K ++    K  V
Sbjct: 508 DARVTLFDRKARKVQVSVKALEIAEEKEAV 537


>gi|146329586|ref|YP_001209043.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
 gi|146233056|gb|ABQ14034.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
          Length = 558

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +    I    E     + +D      + S         +     +    + 
Sbjct: 133 PGSLVDVRPVKDPAIVEGKEIEFKIIKLDQKRNNIVVSRRAVIEHEYKAEREEVLQNLQE 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + K  V  + D+GAF+   G  DGL+HI+ ++ +R+   S+VV  GD V VK+L FD 
Sbjct: 193 GDVVKAVVKNLTDYGAFLDL-GGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDR 251

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L +K + ++    I 
Sbjct: 252 ERARVSLGLKQLGEDPWGDIA 272



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++    K   E  LQ  +    V+ +          + +GG     
Sbjct: 160 LDQKRNNIVVSRRAVIEHEYKAEREEVLQNLQEGDVVKAVVKNLTDYGAFLDLGGVDGLL 219

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    ++     VNI D+  VK+          +        +    I +   VN 
Sbjct: 220 HITDMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLGLKQLGEDPWGDIAERYPVNT 279

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+GAFV      +GLVH+S++    +       V  G  V V +LD D +
Sbjct: 280 QASGRVTNIADYGAFVEIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVEVMILDVDSE 339

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L MK    N  + 
Sbjct: 340 RRRISLGMKQCQSNPWQE 357



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK--- 665
             +         +  KGQ+  + DFG F+   G  DGLVH+S LS +      + V+   
Sbjct: 354 PWQEFEKNYNKGERIKGQIKSITDFGIFIGLPGGIDGLVHLSDLSWDENN--EEAVRAYQ 411

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +G  V   +L  + DR +I L +K + Q+
Sbjct: 412 KGQEVETIILGIEADRERISLGIKQLSQD 440



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G++V++ +  A V+     +G++  ++ + ERV   + +   GD +  K+L+ D + 
Sbjct: 454 VVSGKIVELDERQATVNLAEGVNGVLRAAEAAIERVEDLTKLFAVGDEIEAKVLNIDRKH 513

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           K I LS++  D    K ++
Sbjct: 514 KSIALSIRAKDVAEEKAVI 532


>gi|74317963|ref|YP_315703.1| hypothetical protein Tbd_1945 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057458|gb|AAZ97898.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 800

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA           +   + +G V  V  FGAFV     +DG
Sbjct: 629 DILRELEKPGRDPRPEFATAAFRDGIETLADLKPEMVLEGVVTNVAAFGAFVDIGVHQDG 688

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           LVHIS LS   V     VVK G  V VK+L+ D+ R +I L+M++ D   G
Sbjct: 689 LVHISALSNSFVKDPHTVVKAGQIVKVKVLEVDEKRKRIALTMRLGDAAAG 739


>gi|325510251|gb|ADZ21887.1| Transcription accessory protein TEX, RNA-binding protein containing
           S1 domain [Clostridium acetobutylicum EA 2018]
          Length = 724

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 594 KIASSSLAEIEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K       E+               +      G V  V DFGAFV     +DGLVHISQL
Sbjct: 627 KPGRDPREEMPKPILKTGIMDIKQLKSGMTLMGTVRNVADFGAFVDIGVHQDGLVHISQL 686

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           S   V    DVVK GD V V++L+ D+ R +I L+MK
Sbjct: 687 SDSFVKHPLDVVKVGDIVEVRILEVDEKRNRISLTMK 723


>gi|297569509|ref|YP_003690853.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2]
 gi|296925424|gb|ADH86234.1| ribosomal protein S1 [Desulfurivibrio alkaliphilus AHT2]
          Length = 568

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 11/277 (3%)

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDH 485
           + T + G  S A +   S+ + D G  ++  V  +     LV  GD      DIS   + 
Sbjct: 6   DTTATAGGESFADLFEQSIRVADVGEVVNGEVIAVGKDYVLVDIGDKAEGEIDISEFRNE 65

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G ++  V  T      ++     GG+  +       +       I      +    R+ 
Sbjct: 66  EGQIEVNVGDTFE--VFVEKREPEGGLKLSRERAIGIKVWEEIARIQEADGTITG--RID 121

Query: 546 LGEFTPRVEIMAIPPDQIRNVI--GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
                     + +P     + I       +   I E    K+   +     +  S  A +
Sbjct: 122 SRVKGGLSVDIGVPAFLPYSQIDLRPVRDLDAMIGESYDFKILKYNRRRNNVVISRRAIM 181

Query: 604 EAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E  R+ +R       E  ++  G V  + D+G FV   G  DGL HI+ LS  RV+  S 
Sbjct: 182 EEERQKLREEMRTSLEEGQVLTGSVTNITDYGVFVDLGGM-DGLCHITDLSWGRVSHPSK 240

Query: 663 VVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           + K GD + VK+L +D    K+ L +K +  +  + I
Sbjct: 241 MYKVGDEIQVKILKYDKENDKVSLGVKQLKSDPWETI 277



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V     G+VV + D+GAFV      +GLVHIS++S  ++    S +V  
Sbjct: 272 DPWETIQQRYPVGAKVPGKVVSITDYGAFVELEEGVEGLVHISEMSWSKKSRHPSKIVSV 331

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GD V V +L+ D    +I L MK +  N  
Sbjct: 332 GDEVEVAVLNVDPEAKRISLGMKQLQPNPW 361



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +   V  I +G++  + DFG F+      DGL+H+S LS  ER+    +   +G
Sbjct: 360 PWDMVAENYPVGSIIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPGEKYAKG 419

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +T+   +L  D +  +  L +K +  +  +  V
Sbjct: 420 ETIQAVVLKIDKENERFSLGIKQLQPDPWEAAV 452



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +   +     G++  V DFG FV      +GLVH+S+LS E+V     +   G
Sbjct: 446 DPWEAAVEKYAIGTKISGKITNVTDFGVFVELEEGIEGLVHVSELSKEKVETPVGLYNVG 505

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVV 690
           D +  ++++   +  KI LS+K +
Sbjct: 506 DNLEARVINVSAKDRKIGLSIKAL 529


>gi|167039140|ref|YP_001662125.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|300913270|ref|ZP_07130587.1| Tex-like protein [Thermoanaerobacter sp. X561]
 gi|307723716|ref|YP_003903467.1| Tex-like protein [Thermoanaerobacter sp. X513]
 gi|166853380|gb|ABY91789.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
 gi|300889955|gb|EFK85100.1| Tex-like protein [Thermoanaerobacter sp. X561]
 gi|307580777|gb|ADN54176.1| Tex-like protein protein-like protein [Thermoanaerobacter sp. X513]
          Length = 712

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEV 619
           ++I     +G   +  IV +             K       ++         +T +  + 
Sbjct: 594 EKISEEYDIGLPTLYDIVSELK-----------KPGRDPREDLPKPILRSDVMTINELKP 642

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
                G V  V DFG FV      DGLVHIS++S   +    DVV  GD V V++L  D 
Sbjct: 643 GMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVLSVDI 702

Query: 679 DRGKIKLSMK 688
           +R +I LSMK
Sbjct: 703 ERNRISLSMK 712


>gi|49482735|ref|YP_039959.1| hypothetical protein SAR0509 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427042|ref|ZP_06819679.1| hypothetical protein SIAG_02729 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|49240864|emb|CAG39531.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295129045|gb|EFG58674.1| hypothetical protein SIAG_02729 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 133

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|17545628|ref|NP_519030.1| 30S ribosomal protein S1 [Ralstonia solanacearum GMI1000]
 gi|17427921|emb|CAD14611.1| probable 30s ribosomal subunit protein s1 [Ralstonia solanacearum
           GMI1000]
          Length = 562

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 139 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 194 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 252 DQEKNRVSLGVKQLGEDPW 270



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 285 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 344

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 345 ISLGMKQCKANPWDD 359



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 336 LDIDEDKRRISLGMKQCKAN----PWDDFARNHKKGDKLAGQIKSITDFGVFIGLPGGID 391

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D ++ +I L +K +  + 
Sbjct: 392 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVEKERISLGIKQLSGDP 443



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I    +  V   GA V      +G +  S++S++RV    +V+KEG+T+   +++ D + 
Sbjct: 456 IVSVTIKTVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKS 515

Query: 682 K-IKLSMKVVD 691
           + I +S+K  D
Sbjct: 516 RNINVSIKAKD 526


>gi|307265004|ref|ZP_07546565.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919989|gb|EFN50202.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 144

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIREHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMK 688
           D  G+I LS+K
Sbjct: 64  DANGRISLSIK 74


>gi|187927875|ref|YP_001898362.1| 30S ribosomal protein S1 [Ralstonia pickettii 12J]
 gi|187724765|gb|ACD25930.1| ribosomal protein S1 [Ralstonia pickettii 12J]
          Length = 562

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 139 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 194 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 252 DQEKNRVSLGVKQLGEDPW 270



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 285 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 344

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 345 ISLGMKQCKANPWDD 359



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 336 LDIDEDKRRISLGMKQCKAN----PWDDFARNQKKGDKLAGQIKSITDFGVFIGLPGGID 391

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D D+ +I L +K +  + 
Sbjct: 392 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVDKERISLGIKQLSGDP 443



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I +  +  V   GA V      +G +  S++S++RV    +V+KEG
Sbjct: 442 DPFNNFISTNDKGSIVQVTIKAVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEG 501

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           +T+   +++ D + + I +S+K  D
Sbjct: 502 ETMTAMIVNIDRKSRNINVSIKAKD 526


>gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 484

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            + ++  AK+   D     +  S  A +E  +   RS   +  +  ++ KG V  +++FG
Sbjct: 166 YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRSTFLNNLQKGQVRKGVVSSIVNFG 225

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 226 AFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQED 284

Query: 694 TGK 696
             +
Sbjct: 285 PWQ 287



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   + +D D   V ++  +  E     +  +       + ++  G
Sbjct: 247 IEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQE-----DPWQVFARTHAIGQVAPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+LS + V     VV  GD V+VK++D D +R +I 
Sbjct: 302 KVTKLVPFGAFVRVAEGIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDIDLERRRIS 361

Query: 685 LSMKVVD 691
           LS+K  +
Sbjct: 362 LSLKQAN 368



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS +     ++VVK GDTV   +L   D 
Sbjct: 39  DLIEGTVVKIDRDEVLIDVGYKTEGVIPSRELSIKHDVDPTEVVKVGDTVEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLILSKKRAQ 110


>gi|145628950|ref|ZP_01784750.1| predicted transcriptional accessory protein [Haemophilus influenzae
           22.1-21]
 gi|144979420|gb|EDJ89106.1| predicted transcriptional accessory protein [Haemophilus influenzae
           22.1-21]
          Length = 648

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 463 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 517

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 518 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 577

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 578 IVKVKVLEVDVPRKRIALTMR-LDESAVK 605


>gi|197303158|ref|ZP_03168201.1| hypothetical protein RUMLAC_01882 [Ruminococcus lactaris ATCC
           29176]
 gi|197297761|gb|EDY32318.1| hypothetical protein RUMLAC_01882 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D      + S+     E  ++   ++    +V  + KG V  + ++GAFV       
Sbjct: 93  IDVDQANNRLVLSARELLKEKEKKAREALIASIQVGSVLKGTVETLQNYGAFVKLENGLS 152

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVH+SQ+S +RV   SDV++ G  V VK++   D GKI LSMK +
Sbjct: 153 GLVHVSQISQKRVKLPSDVLEVGQEVEVKVIGIKD-GKISLSMKAL 197


>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
 gi|14285757|sp|Q9NQT4|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
           Full=Chronic myelogenous leukemia tumor antigen 28;
           AltName: Full=Exosome component 5; AltName:
           Full=Ribosomal RNA-processing protein 46; AltName:
           Full=p12B
 gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
 gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
          Length = 235

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+A  L  DG   ++L   S  E     +
Sbjct: 135 NAACMALVDAGVPMRALFCGVACALDSDGT--LVLDPTSKQEKEARAV 180



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 22/150 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E    R+I  +   +       +    V++ V+      S     + AA  AL+ +G
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVS--DAGSLLACCLNAACMALVDAG 145

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
           +P      G       +G  VL+P   +++
Sbjct: 146 VPMRALFCGVACALDSDGTLVLDPTSKQEK 175


>gi|146294886|ref|YP_001185310.1| RNA-binding S1 domain-containing protein [Shewanella putrefaciens
           CN-32]
 gi|145566576|gb|ABP77511.1| RNA binding S1 domain protein [Shewanella putrefaciens CN-32]
          Length = 813

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++ 
Sbjct: 682 KPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVMEV 741

Query: 678 D-DRGKIKLSMK---VVDQNTGK 696
           D +R +I LSM+    ++QN  +
Sbjct: 742 DVERRRIGLSMRLDEAIEQNNAQ 764


>gi|294669724|ref|ZP_06734790.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308290|gb|EFE49533.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 758

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+   +
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGAE 717


>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
 gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
          Length = 277

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 101/258 (39%), Gaps = 24/258 (9%)

Query: 298 IQAKVVRTVMLDKKVRMDGR--DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +     +        R+DGR      VR +  + GL+ +  GS+    G+T+ I     G
Sbjct: 21  LCKTAAKKSTASNDARVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLIC-CVYG 79

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            RE E+  +  +  +    +    F P +  E          E     +   ++ P +  
Sbjct: 80  PRETERKDE--TDMKSGRLITDMRFAPFSCRERGS-WIQGSDEKDLSLMLLESLRPGVCL 136

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
                  + +   + E+DG+     V  +S+AL DAG+ +   V G ++   ++G  +  
Sbjct: 137 QKYPRSQIEVNVMVLENDGAVLAHAVTCASMALADAGIEMYDLVLGCSI--RQEGATY-- 192

Query: 476 LSDISGDE-----------DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           L D +  E           ++LG +      + + I+ +Q D ++G   E+ +   ++  
Sbjct: 193 LIDPTFLEENGCNLASGSRENLGSLTVAFLPSLNQISGLQSDGEMG---EDTLTGGVRTC 249

Query: 525 KRGRLHILNEMSKVLSES 542
             G   +   + + LS++
Sbjct: 250 IEGCFKLYPVIQQALSKA 267



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 93/243 (38%), Gaps = 28/243 (11%)

Query: 10  EWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQE 65
           +   R + +  G I+ Q+ G+     G T ++  V   R  +   +       L  + + 
Sbjct: 44  QVDVRSVFVRCGLIS-QAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGRLITDMRF 102

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLE 123
             ++  +  G +++       +E  +S M+  S+RP     K  +++ +V + V+++D  
Sbjct: 103 APFS-CRERGSWIQ-----GSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMVLENDGA 156

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ------------ 171
              H  ++  AS AL  +G+     V+G  +      Y+++P   E+             
Sbjct: 157 VLAH--AVTCASMALADAGIEMYDLVLGCSIRQEGATYLIDPTFLEENGCNLASGSRENL 214

Query: 172 GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV 231
           GSL +    + + +  ++ +  ++ ED +   +      C  +   I +      +    
Sbjct: 215 GSLTVAFLPSLNQISGLQSDG-EMGEDTLTGGVRTCIEGCFKLYPVIQQALSKAVRRKAP 273

Query: 232 IDS 234
              
Sbjct: 274 PSE 276


>gi|153956208|ref|YP_001396973.1| Tex [Clostridium kluyveri DSM 555]
 gi|219856533|ref|YP_002473655.1| hypothetical protein CKR_3190 [Clostridium kluyveri NBRC 12016]
 gi|146349066|gb|EDK35602.1| Tex [Clostridium kluyveri DSM 555]
 gi|219570257|dbj|BAH08241.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 717

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
             +  +      G V  V DFGAFV     +DGLVHISQLS + V    DVVK GD V V
Sbjct: 641 DMNQLKPGMTLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVKVGDIVNV 700

Query: 673 KLLDFDD-RGKIKLSMK 688
            +L+ D+ R +I LSMK
Sbjct: 701 TVLEVDEKRKRIALSMK 717


>gi|145635345|ref|ZP_01791047.1| transcription elongation factor GreB [Haemophilus influenzae
           PittAA]
 gi|145267351|gb|EDK07353.1| transcription elongation factor GreB [Haemophilus influenzae
           PittAA]
          Length = 770

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
 gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
          Length = 384

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           KV   D    K+  S  A ++A  E  +           + +G+V ++  FGAFV   G 
Sbjct: 152 KVTEIDKDNNKLILSQRAVLDAEIEEKKKQVLHSLSTGDVVEGKVQRLTSFGAFVDV-GG 210

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            DGLVHISQ++ ERV   SDV+ EG  V VK+L  D D  ++ LS+K +     + I
Sbjct: 211 VDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDPDSERVSLSIKEMLAGPWENI 267



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I        I  G V +++ FGAFV      +GLVHISQ+S   +    +V++EG 
Sbjct: 263 PWENIESKFSAGDIVTGTVKRLVSFGAFVEIAPGVEGLVHISQISKRHIGTPQEVLEEGQ 322

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            V  K+L+  +   ++ LS++   +   +
Sbjct: 323 QVQAKVLEVSEADRRVSLSIREASEEQER 351



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G+V KV D  AFV      DG+V IS+LS+  V K SDV+   D + +K+   +
Sbjct: 17  VGDIVTGKVTKVEDKQAFVDVGFKVDGIVPISELSSLHVEKASDVLSVDDELELKVTKVE 76

Query: 679 DRGKIKLSMKVVDQN 693
           D   I LS K V   
Sbjct: 77  DDELI-LSKKAVQAE 90


>gi|306825063|ref|ZP_07458405.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432499|gb|EFM35473.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 400

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+LD + D  ++ LS+K +++   + 
Sbjct: 328 EVTVKVLDVNADAERVSLSIKALEERPAQE 357



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAATAAARAEVFSKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|270292576|ref|ZP_06198787.1| ribosomal protein S1 [Streptococcus sp. M143]
 gi|293365610|ref|ZP_06612319.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|307703559|ref|ZP_07640501.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|315613325|ref|ZP_07888234.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296]
 gi|322375396|ref|ZP_08049909.1| ribosomal protein S1 [Streptococcus sp. C300]
 gi|331266202|ref|YP_004325832.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5]
 gi|270278555|gb|EFA24401.1| ribosomal protein S1 [Streptococcus sp. M143]
 gi|291315978|gb|EFE56422.1| 30S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|307622966|gb|EFO01961.1| 40S ribosomal protein S1 [Streptococcus oralis ATCC 35037]
 gi|315314560|gb|EFU62603.1| 30S ribosomal protein S1 [Streptococcus sanguinis ATCC 49296]
 gi|321279659|gb|EFX56699.1| ribosomal protein S1 [Streptococcus sp. C300]
 gi|326682874|emb|CBZ00491.1| 30S ribosomal protein S1 [Streptococcus oralis Uo5]
          Length = 400

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+LD + D  ++ LS+K +++   + 
Sbjct: 328 EVTVKVLDVNADAERVSLSIKALEERPAQE 357



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|76636632|ref|XP_873064.1| PREDICTED: zinc finger, CCHC domain containing 17 [Bos taurus]
 gi|297483790|ref|XP_002693879.1| PREDICTED: zinc finger, CCHC domain containing 17-like [Bos taurus]
 gi|296479473|gb|DAA21588.1| zinc finger, CCHC domain containing 17-like [Bos taurus]
          Length = 237

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEG 667
              ++ ++P +  I++G+V  V D+GAF+   G  + GLVH + +S+ RV K S++V  G
Sbjct: 5   RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 64

Query: 668 DTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           D V VKL+     DDR K+ LSMKVVDQ T K +
Sbjct: 65  DKVCVKLIGREMKDDRIKVSLSMKVVDQGTVKDL 98


>gi|313888064|ref|ZP_07821742.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846019|gb|EFR33402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 696

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDF 633
           + I E+   ++   D    +I  S    ++   + +R       +   I +G V ++ +F
Sbjct: 419 KFIGEEFETEIIDFDKRKRRIVLSRKNVLQKELDKVRDEVYDKLKEGDIIEGTVQRLTNF 478

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  DGL+HIS+LS  RV   SDVV  GD V V++L+ D ++ +I L +K   +
Sbjct: 479 GAFVDV-GGVDGLIHISELSWNRVKHPSDVVAPGDVVKVQVLNVDKEKNRIALGLKQTME 537

Query: 693 NTG 695
              
Sbjct: 538 KPW 540



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     T+  +V  + KG+VV ++DFGAFV      DGL+H+SQ+S E V K  D +  G
Sbjct: 538 KPWDVFTNEVKVGDVVKGKVVNLLDFGAFVRLEQGVDGLLHVSQISREHVEKPQDKLSIG 597

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVV 690
           + V VK+ D D+   KI LS+K +
Sbjct: 598 EEVTVKVTDIDEENQKISLSIKAL 621



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 16/141 (11%)

Query: 553 VEIMAIPPDQIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           +  + +   +  N IG+  G      ++++  +++   D G          E+  A E  
Sbjct: 235 IRDIDLNIFKKFNKIGITAGASTPESVIKEAVSRMENFDKG----------EMMEAIENS 284

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  E   +  G+V+ + D    V+     DG++   +L+        D+ ++G  +
Sbjct: 285 FKRIRRGE---VVTGEVLYITDSEVMVNLGYRSDGIISRDELAGGPDVNPQDLYEQGQEI 341

Query: 671 WVKLLDFDD-RGKIKLSMKVV 690
            V +L  DD  G + LS K V
Sbjct: 342 DVYVLKMDDGDGNVVLSTKRV 362


>gi|309389980|gb|ADO77860.1| RNA binding S1 domain protein [Halanaerobium praevalens DSM 2228]
          Length = 121

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 48/79 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G++  + +FGAFV       GLVHIS+++   V   S+ +KEGD V VK+++ 
Sbjct: 4   EVGSIVVGEITGITNFGAFVELESGETGLVHISEVANTYVKDISNFLKEGDDVKVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           D+ GKI LS+K ++    +
Sbjct: 64  DNDGKIGLSIKQLEDPDDR 82


>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
           melanoleuca]
          Length = 239

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 32  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 78

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 79  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 138

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
             + +AL+DAGVP+     G+   L  DG    ++ D +  ++         A
Sbjct: 139 NAACMALVDAGVPMRALFCGVTCALNSDG---TLVLDPTAKQEKEARAVLTFA 188



 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 22/150 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 46  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 91

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E    R+I  +   +       +    V++ V+      S     + AA  AL+ +G
Sbjct: 92  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVIS--DAGSLLACCLNAACMALVDAG 149

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
           +P      G       +G  VL+P   +++
Sbjct: 150 VPMRALFCGVTCALNSDGTLVLDPTAKQEK 179


>gi|257456491|ref|ZP_05621687.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
           35580]
 gi|257446151|gb|EEV21198.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC
           35580]
          Length = 801

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      D  +VN I KG V K+ DFGAFV      +GLVHIS+ S  ++V+K SD+VK 
Sbjct: 505 DPWLEFEDKFQVNDIVKGHVTKITDFGAFVELSEGIEGLVHISEFSWVKKVSKPSDMVKI 564

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L +D   G++ L +K V  N    I
Sbjct: 565 GDEVECMILGYDIQAGRVSLGLKQVTANPWDNI 597



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 7/153 (4%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             +  F P  +  A   D+  +++G  G     I +    +    D+  V         +
Sbjct: 361 ANMIAFLPISQAAAQKVDKPESLLGQKGSF--YIEKMVFDRKGNRDNIVVNRRKYLEDTV 418

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  RE     T+   +  + KG V     FGAF+   G  DGL+HI+ +S   V +  D 
Sbjct: 419 EKNREAFFENTN---IGDVVKGAVKSFTSFGAFIDLGGF-DGLLHINDMSWGHVTRPKDF 474

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           VK+G  + +K++  D    +I LS+K    +  
Sbjct: 475 VKKGQEIDLKVIRLDPAEKRINLSLKHFTPDPW 507



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK-- 665
           +  ++  +  +   I +G+V  V DFG FV   G  +GL+H   L   R     +V+K  
Sbjct: 679 DPWKTFAEAYKPGSIVEGEVTSVTDFGIFVKVPGGIEGLIHKQNLVENREDNPDEVLKKY 738

Query: 666 -EGDTVWVKLLDFD-DRGKIKLSMKV 689
             GD V   +LD +    K   S++ 
Sbjct: 739 AVGDKVKATVLDVNVKDKKTAFSIRD 764



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAK 584
            I   +     +  L+  +     +I+     +I +      +  G + +  I E +  K
Sbjct: 494 RINLSLKHFTPDPWLEFEDKFQVNDIVKGHVTKITDFGAFVELSEGIEGLVHISEFSWVK 553

Query: 585 --------VNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVK 629
                   V I D+    I    +     +            +I +   V      +VVK
Sbjct: 554 KVSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWDNIDERYPVGTRLTRKVVK 613

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           + + GAF+      DG +H+  LS  +RV   +  ++ G  + V +++ +    +I+L +
Sbjct: 614 LTNAGAFIELEEGIDGFLHVDDLSWTKRVRHPNSELEVGQELEVIVIECNPAEHRIRLGV 673

Query: 688 KVVDQNTGK 696
           K +  +  K
Sbjct: 674 KQLSDDPWK 682


>gi|325982394|ref|YP_004294796.1| Tex-like protein [Nitrosomonas sp. AL212]
 gi|325531913|gb|ADZ26634.1| Tex-like protein [Nitrosomonas sp. AL212]
          Length = 740

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           AI P+Q  N    G   ++ I+++      ++  G    ++   A  +   E I+     
Sbjct: 611 AIHPEQYAN-AQFGLLTVKDILKE------LEKPGRDPRSTFRTAAFKEGIETIK----D 659

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
              + I +G +  V  FGAFV     +DGLVHIS LS + V     +VK G  V VK+LD
Sbjct: 660 LRSDMILEGVITNVAAFGAFVDIGVHQDGLVHISALSDKFVKNPHAIVKVGQVVTVKVLD 719

Query: 677 FDD-RGKIKLSMKVVD 691
            D+ R +I L+M++ D
Sbjct: 720 IDEKRKRIALTMQLSD 735


>gi|255717010|ref|XP_002554786.1| KLTH0F13772p [Lachancea thermotolerans]
 gi|238936169|emb|CAR24349.1| KLTH0F13772p [Lachancea thermotolerans]
          Length = 1114

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD----GLVHISQLSTERVAKTSDVVKEGDTVWV 672
           P ++KIY G V K++ FG FV   G +D    GLVHIS+++  R+   S+VV  G  V+V
Sbjct: 176 PAIDKIYPGVVRKLVGFGCFVRISGTKDPRCDGLVHISEMADRRINDPSEVVSLGQRVFV 235

Query: 673 KLLDFDDRGKIKLSMKVVDQNTG 695
           K++     GKI L +K ++QNTG
Sbjct: 236 KVIKVQKNGKISLRLKNINQNTG 258


>gi|227552666|ref|ZP_03982715.1| RNA-binding protein [Enterococcus faecium TX1330]
 gi|257888635|ref|ZP_05668288.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257897410|ref|ZP_05677063.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257899970|ref|ZP_05679623.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|293378831|ref|ZP_06624986.1| general stress protein 13 family protein [Enterococcus faecium
           PC4.1]
 gi|293571075|ref|ZP_06682116.1| S1-type RNA-binding domain protein [Enterococcus faecium E980]
 gi|227178195|gb|EEI59167.1| RNA-binding protein [Enterococcus faecium TX1330]
 gi|257824689|gb|EEV51621.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257833975|gb|EEV60396.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257837882|gb|EEV62956.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|291608858|gb|EFF38139.1| S1-type RNA-binding domain protein [Enterococcus faecium E980]
 gi|292642372|gb|EFF60527.1| general stress protein 13 family protein [Enterococcus faecium
           PC4.1]
          Length = 156

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK++  
Sbjct: 4   EVGAKLQGKVSGITNFGAFIDLGAGKTGLVHISEVSNGYVKDIHDVLSVGDEVTVKVISV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           +D GKI LS++   +  
Sbjct: 64  NDDGKIGLSIRKAQEQP 80


>gi|225025370|ref|ZP_03714562.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC
           23834]
 gi|224941814|gb|EEG23023.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC
           23834]
          Length = 758

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+   +
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGAE 717


>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 246

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 11/238 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R     +        GSS   +G+ +   +VTL     E  +
Sbjct: 5   ELYSPEGLRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNK---IVTLVKGPQEPIL 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S     +    +  N    +  E S+      RR +       R     +         
Sbjct: 62  RSQLDATKASLNITVNITKFSKMERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTL 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS-G 481
           + I   + + DG    + +   +LAL+D+G+ +   V+ I++GL     D   L D++  
Sbjct: 122 IDIEIHVLQQDGGILGSLINSITLALIDSGIAMYDYVSAISIGLY----DTTPLLDVNTL 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEMSKV 538
           +E+ +  +   V G    ++ + ++ KI       ++ + +  A R R  + NE+ K 
Sbjct: 178 EENAMSTVTLGVIGKSEKLSLLSVEDKIPLDRLESVLAIGIAGAHRVRELMDNELRKH 235


>gi|297544051|ref|YP_003676353.1| Tex-like protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841826|gb|ADH60342.1| Tex-like protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 712

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +      G V  V DFG FV      DGLVHIS++S   +    DVV  GD V 
Sbjct: 635 MTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVAVGDIVK 694

Query: 672 VKLLDFD-DRGKIKLSMK 688
           VK+L+ D +R +I LSMK
Sbjct: 695 VKVLNVDLERNRISLSMK 712


>gi|146337269|ref|YP_001202317.1| 30S ribosomal protein S1 [Bradyrhizobium sp. ORS278]
 gi|146190075|emb|CAL74067.1| 30S ribosomal subunit protein S1 [Bradyrhizobium sp. ORS278]
          Length = 569

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 176 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 233

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 234 DIAWRRVNHPTEVLSIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 282



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 277 DPWQGIEAKYPLQARFHGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 336

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 337 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 367



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R       +      + +G+V    +FG F+   G  DG+VH+S L  +    +  D  K
Sbjct: 363 RNPWEVFVEKHPTGSVVEGEVKNKTEFGLFLGLEGDVDGMVHLSDLDWKLPGEQVIDNYK 422

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K ++ + 
Sbjct: 423 KGDMVKAVVLDVDVEKERISLGIKQLEGDP 452



 Score = 41.8 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+ V D G  V   G      +  S+L+ +R  + ++    G+ V  +++ FD +
Sbjct: 464 VVTCEVLDVKDGGIDVKITGTDFTTFIKRSELARDRNDQRTERFAVGEKVDARVIQFDKK 523

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 524 ARKVQVSIKALEVAEEKEAI 543


>gi|29828211|ref|NP_822845.1| transcription accessory protein [Streptomyces avermitilis MA-4680]
 gi|29605313|dbj|BAC69380.1| putative transcription accessory protein [Streptomyces avermitilis
           MA-4680]
          Length = 810

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  
Sbjct: 656 MVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDIDIP 715

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L++++ D+   
Sbjct: 716 RKRISLTLRLDDEAAA 731


>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
          Length = 268

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 61  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 107

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 108 TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 167

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+A  L  DG   ++L   S  E     +
Sbjct: 168 NAACMALVDAGVPMRALFCGVACALDSDGT--LVLDPTSKQEKEARAV 213



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 75  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 120

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 121 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 180

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 181 MRALFCGVACALDSDGTLVLDPTSKQEK 208


>gi|299821632|ref|ZP_07053520.1| 30S ribosomal protein S1 [Listeria grayi DSM 20601]
 gi|299817297|gb|EFI84533.1| 30S ribosomal protein S1 [Listeria grayi DSM 20601]
          Length = 382

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   V  + +    I S  +   EA  E  + + +    N +  G+V ++ DFGAFV   
Sbjct: 149 TFKVVEFEPENNRVILSHRVVLEEAKLEQKKEVLEKIHENDVLTGKVARLADFGAFVDL- 207

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
           G  DGLVH+SQ+S   + K S+V++EG  V VK+L  D    +I LS+K         I 
Sbjct: 208 GGVDGLVHVSQISYSHIDKPSEVLEEGQEVKVKVLSVDKANERISLSIKETLPGPWDDIA 267



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +      +  G+VV+++ FGAFV      +GLVHISQ++ + +    +V+KEG 
Sbjct: 262 PWDDIAEKMPAGSVLSGKVVRLVSFGAFVEVAPGVEGLVHISQIAHKHIGTPQEVLKEGQ 321

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V VK+LD + D  ++ LS+K + ++ 
Sbjct: 322 EVEVKVLDVNLDEKRLSLSIKALQEDP 348



 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E+        +      G V  V +   +V    ++ DG+V IS+LS   V   SD+V  
Sbjct: 4   ELENVEVKNFKEGDRVTGTVSSVEEKQVYVGIPDSKLDGVVPISELSNVHVENASDIVST 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVD 691
           GDT+ + +   ++   + LS + VD
Sbjct: 64  GDTLDLVVTKVEEDLLV-LSKRKVD 87


>gi|148358952|ref|YP_001250159.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
 gi|296107001|ref|YP_003618701.1| small subunit ribosomal protein S1 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280725|gb|ABQ54813.1| 30S ribosomal protein S1 [Legionella pneumophila str. Corby]
 gi|295648902|gb|ADG24749.1| small subunit ribosomal protein S1 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 558

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +         E     + +D      + S      E +    +++ +    
Sbjct: 132 PGSLVDVRPVRDPSYLEGKELEFKVIKMDLKRNNIVVSRRAVVEEESSADRQALLESLHD 191

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +   G V  + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G  V VK+L FD 
Sbjct: 192 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L MK +  +    +V
Sbjct: 251 ERNRVSLGMKQLGNDPWVDLV 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 17/197 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M +        R  ++ E S    ++ L+       +  +          I +GG     
Sbjct: 159 MDLKRNNIVVSRRAVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNK 621
               +    V+     +++  D  VK+ S        +        +    + +   + K
Sbjct: 219 HITDISWKRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGK 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             +G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 279 RLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L MK    N  +
Sbjct: 339 RRRISLGMKQCVGNPWQ 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  V      V       G + +S+LS ERV   + +VK GD V  K+ + D + 
Sbjct: 453 IVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D       +
Sbjct: 513 RTISLSVKAKDAQDEADAI 531



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + +K     S + ++  D+K+  +S +       
Sbjct: 197 GIVKNLTDYGAFIDLGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
                R  +   M ++ ++  + L E  P  + +      I +      I  G + +  +
Sbjct: 250 ---SERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIEEGVEGLVHM 306

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E      N+     V +       +    E                 +         + 
Sbjct: 307 SEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNKGEK 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            KG++  + DFG F+   G  DGLVH+S +S      +     K+G  +   +L  D +R
Sbjct: 367 VKGKIRSITDFGIFIGLDGDIDGLVHLSDISWTIPGEEAVKQFKKGQDLEAVILAIDPER 426

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K ++ ++
Sbjct: 427 ERISLGLKQLEGDS 440


>gi|187477852|ref|YP_785876.1| 30S ribosomal protein S1 [Bordetella avium 197N]
 gi|115422438|emb|CAJ48963.1| 30S ribosomal protein S1 [Bordetella avium 197N]
          Length = 570

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  D      +   +  AL+  +     I  ++   L+    
Sbjct: 75  DFVSVAIDSLENGYGDTILSRDRAKRLSAWLQLEKALENGELVTGTITGKVKGGLTVMTN 134

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +++     GK +   V +   K N      V ++   + E  
Sbjct: 135 GIRAFLPGSL---VDLRPVKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRQVLEAS 186

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   + KG V  + D+GAFV   G  DGL+HI+ ++  RV   S+V+
Sbjct: 187 MGEERQKLLETLHEGA-VVKGVVKNITDYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVL 244

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + G  V  K+L FD ++ ++ L +K + ++  
Sbjct: 245 QVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPW 276



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +      VV  
Sbjct: 274 DPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D DR +I L MK   QN  + 
Sbjct: 334 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEE 365



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                +          +     +G +  + DFG FV   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCR----QNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWTETGE-EAVRNFKKGDEIEAVVLGIDTEKERISLGIKQLEGDP 449



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 21/242 (8%)

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
                L+D     +    ++  V  ++   T   +D +        + + + +    R  
Sbjct: 291 GKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRR 350

Query: 531 ILNEMSKVLSESRLQLGEFTPR----------VEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           I   M +       +      R          +    +       + G+         E 
Sbjct: 351 ISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGIDGLVHLSDLSWTET 410

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQVVKV 630
               V     G    A     + E  R          +   +     +   +  G + +V
Sbjct: 411 GEEAVRNFKKGDEIEAVVLGIDTEKERISLGIKQLEGDPFNNFVATYDKGAVVPGTIKQV 470

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
              GA V      +G +  S++S+ RV   + V+  GD V   +++ D + + I+LS+K 
Sbjct: 471 EAKGAVVTLSVDVEGYLRASEISSGRVEDATTVLNVGDNVEAMIINIDRKARSIQLSIKA 530

Query: 690 VD 691
            D
Sbjct: 531 RD 532


>gi|54297331|ref|YP_123700.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
 gi|161723255|ref|YP_095450.2| 30S ribosomal protein S1 [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53751116|emb|CAH12527.1| 30S ribosomal protein S1 [Legionella pneumophila str. Paris]
          Length = 558

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +         E     + +D      + S      E +    +++ +    
Sbjct: 132 PGSLVDVRPVRDPSYLEGKELEFKVIKMDLKRNNIVVSRRAVVEEESSADRQALLESLHD 191

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +   G V  + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G  V VK+L FD 
Sbjct: 192 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L MK +  +    +V
Sbjct: 251 ERNRVSLGMKQLGNDPWVDLV 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 17/197 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M +        R  ++ E S    ++ L+       +  +          I +GG     
Sbjct: 159 MDLKRNNIVVSRRAVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNK 621
               +    V+     +++  D  VK+ S        +        +    + +   + K
Sbjct: 219 HITDISWKRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGK 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             +G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 279 RLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L MK    N  +
Sbjct: 339 RRRISLGMKQCVGNPWQ 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  V      V       G + +S+LS ERV   + +VK GD V  K+ + D + 
Sbjct: 453 IVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D       +
Sbjct: 513 RTISLSVKAKDAQDEADAI 531



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + +K     S + ++  D+K+  +S +       
Sbjct: 197 GIVKNLTDYGAFIDLGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
                R  +   M ++ ++  + L E  P  + +      I +      I  G + +  +
Sbjct: 250 ---SERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIEEGVEGLVHM 306

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E      N+     V +       +    E                 +         + 
Sbjct: 307 SEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNKGEK 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-D 679
            KG++  + DFG F+   G  DGLVH+S +S   V     V   K+G  +   +L  D +
Sbjct: 367 VKGKIRSITDFGIFIGLDGDIDGLVHLSDISWT-VPGEEAVKQFKKGQELEAVILAIDPE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K ++ ++
Sbjct: 426 RERISLGLKQLEGDS 440


>gi|218132315|ref|ZP_03461119.1| hypothetical protein BACPEC_00173 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992830|gb|EEC58831.1| hypothetical protein BACPEC_00173 [Bacteroides pectinophilus ATCC
           43243]
          Length = 808

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I KG V  V+DFGAFV     +DGLVHISQ+S  R+    D V  GD V V
Sbjct: 658 DMKDLKPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQISNRRIEHPLDAVSVGDIVDV 717

Query: 673 KLLDFD-DRGKIKLSMKVVDQN----TGKP 697
           K+LD D  + +I L+M+ +D+N    TG+P
Sbjct: 718 KVLDVDAAKARISLTMR-IDENTDAFTGRP 746


>gi|148643352|ref|YP_001273865.1| transcriptional accessory protein S1 RNA binding family protein
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552369|gb|ABQ87497.1| transcriptional accessory protein, S1 RNA binding family, Tex
           [Methanobrevibacter smithii ATCC 35061]
          Length = 715

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  ++DFGAFV     +DGLVHISQL+ + V    D+V  GD V VK+LD 
Sbjct: 643 EEGMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADKFVKHPLDIVSVGDIVDVKVLDV 702

Query: 678 D-DRGKIKLSM 687
           D  R +I+LSM
Sbjct: 703 DLARNRIQLSM 713


>gi|256375896|ref|YP_003099556.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
 gi|255920199|gb|ACU35710.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
          Length = 785

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ 
Sbjct: 644 KPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISALSDTYVKDPRDVVKSGDVVRVKVLEV 703

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I L++++ D+   KP
Sbjct: 704 DIPRKRIGLTLRLTDEPGRKP 724


>gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
 gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
          Length = 382

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   +      + +D +    I S             +      
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKI------IELDREKNRVILSHKAVVELELDSQKKEAISSL 186

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 187 KEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHAAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|240169473|ref|ZP_04748132.1| transcriptional accessory protein Tex [Mycobacterium kansasii ATCC
           12478]
          Length = 753

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNI------DDDGTVKIASSSLAEIEAAREMIR----- 611
           +  ++   G  +  I+   GA  ++      DD   +      LAE+E      R     
Sbjct: 562 VHRILDRTGLSLAEIIGDAGALRSLRPADFADDRFGIPTVIDILAELEKPGRDPRPTFTT 621

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        +V  + +G V  V  FGAFV     +DGLVH+S ++   VA   DVV
Sbjct: 622 ATFAAGVQKIADLKVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMAERFVADPHDVV 681

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + G  V VK++D D +R +I LS+++ D    +P+
Sbjct: 682 RSGQVVRVKVIDVDVERRRIGLSLRLNDDPQRQPV 716


>gi|299066876|emb|CBJ38071.1| 30S ribosomal subunit protein S1 [Ralstonia solanacearum CMR15]
          Length = 562

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    I++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 139 VDVRPIKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEATLGEERQKLMETLK 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L F
Sbjct: 194 EGA-IVNGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKILKF 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 252 DQEKNRVSLGVKQLGEDPW 270



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +LD D D+ +
Sbjct: 285 GKVTNLTDYGAFVEIEAGIEGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRR 344

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 345 ISLGMKQCKANPWDD 359



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 336 LDIDEDKRRISLGMKQCKAN----PWDDFARNQKKGDKLAGQIKSITDFGVFIGLPGGID 391

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS +      + V   K+GD V   +L  D ++ +I L +K +  + 
Sbjct: 392 GLVHLSDLSWQETG--EEAVRKYKKGDEVEAVVLAIDVEKERISLGIKQLSGDP 443



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I    +  V   GA V      +G +  S++S++RV    +V+KEG+T+   +++ D + 
Sbjct: 456 IVSVTIKAVDPKGAVVQLADDVEGYLRASEISSDRVEDARNVLKEGETMTAMIVNIDRKS 515

Query: 682 K-IKLSMKVVD 691
           + I +S+K  D
Sbjct: 516 RNINVSIKAKD 526


>gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
 gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
          Length = 385

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +   KV   D    K+  S  A ++A  E  +       +     +G V ++ +FGAFV 
Sbjct: 149 ELRLKVEELDQENNKLILSQRAVLDAELEEKKKNVLQSLKSGDTVEGTVQRLTNFGAFVD 208

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             G  DGLVHISQL+  RV   SD+V EGD V VK+L  D D  ++ LS+K       + 
Sbjct: 209 V-GGVDGLVHISQLAHHRVETPSDIVNEGDKVKVKVLSVDPDSERVSLSIKDTQPGPWEE 267

Query: 698 IV 699
           + 
Sbjct: 268 VA 269



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V +++ FGAFV      +GLVHISQ++   +   S+V+ EG+
Sbjct: 264 PWEEVAGQISTGDVIEGTVRRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPSEVLTEGE 323

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693
            V VK+LD + D  +I LS++ + ++
Sbjct: 324 KVEVKVLDVNLDDKRISLSIRELLKD 349



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V KV D  A V      +G+V IS+LS+  V K SDV+   D + +K+L  +
Sbjct: 18  VGDVVTGKVTKVEDKQALVDVGFKVEGIVPISELSSLHVEKVSDVLSVDDELKMKILKLE 77

Query: 679 DRGKIKLSMKVVDQN 693
           D   I LS + V   
Sbjct: 78  DDELI-LSKRAVQAE 91


>gi|182419861|ref|ZP_02951101.1| protein tex [Clostridium butyricum 5521]
 gi|237666425|ref|ZP_04526410.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376409|gb|EDT73991.1| protein tex [Clostridium butyricum 5521]
 gi|237657624|gb|EEP55179.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 723

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 2/137 (1%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+   + G+        V +   K +I  +             +   +         +
Sbjct: 588 DIDKRAELKGLHKLSEEVEVGELTLK-DIIKELKKPGRDPREEMPKPILKTGIIEMKDLK 646

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V +L+ D
Sbjct: 647 PGMVLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVKVSILEVD 706

Query: 679 D-RGKIKLSMKVVDQNT 694
           + R +I L+MK + ++ 
Sbjct: 707 EKRKRISLTMKDIKESE 723


>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
 gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
 gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
 gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
          Length = 235

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+A  L  DG   ++L   S  E     +
Sbjct: 135 NAACMALVDAGVPMRALFCGVACALDSDGT--LVLDPTSKQEKEARAV 180



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEK 175


>gi|331701918|ref|YP_004398877.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129261|gb|AEB73814.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929]
          Length = 168

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 43/76 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  + +FGAF+     R GLVHIS++S   V    DV+K GD V VK+L  
Sbjct: 4   EVGEKVNGKVSGITNFGAFIDLGDHRTGLVHISEVSDGFVKDIHDVLKVGDDVTVKVLKI 63

Query: 678 DDRGKIKLSMKVVDQN 693
           +   KI LS++    N
Sbjct: 64  EGNNKISLSIRKASDN 79


>gi|307265607|ref|ZP_07547161.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919405|gb|EFN49625.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 88

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +      G V  V DFG FV      DGLVHIS++S   +    DVV  GD V 
Sbjct: 11  MTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQGYIKHPLDVVSVGDIVK 70

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V++L  D +R +I LSMK
Sbjct: 71  VRVLSVDIERNRISLSMK 88


>gi|306829662|ref|ZP_07462852.1| 30S ribosomal protein S1 [Streptococcus mitis ATCC 6249]
 gi|304428748|gb|EFM31838.1| 30S ribosomal protein S1 [Streptococcus mitis ATCC 6249]
          Length = 400

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G V ++ DFGAFV      DGLVH+SQ+S +R+    + +  G 
Sbjct: 268 PWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALTVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+LD + D  ++ LS+K +++   + 
Sbjct: 328 EVTVKVLDVNADAERVSLSIKALEERPAQE 357



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       A       +     V  +  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  G+ + VK+LD + + G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|145640544|ref|ZP_01796128.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275130|gb|EDK14992.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 770

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVHQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|54294307|ref|YP_126722.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
 gi|53754139|emb|CAH15612.1| 30S ribosomal protein S1 [Legionella pneumophila str. Lens]
          Length = 558

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +         E     + +D      + S      E +    +++ +    
Sbjct: 132 PGSLVDVRPVRDPSYLEGKELEFKVIKMDLKRNNIVVSRRAVVEEESSADRQALLESLHD 191

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +   G V  + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G  V VK+L FD 
Sbjct: 192 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFDS 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L MK +  +    +V
Sbjct: 251 ERNRVSLGMKQLGNDPWVDLV 271



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 17/197 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M +        R  ++ E S    ++ L+       +  +          I +GG     
Sbjct: 159 MDLKRNNIVVSRRAVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNK 621
               +    V+     +++  D  VK+ S        +        +    + +   + K
Sbjct: 219 HITDISWKRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGK 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             +G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 279 RLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L MK    N  +
Sbjct: 339 RRRISLGMKQCVGNPWQ 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V  V      V       G + +S+LS ERV   + +VK GD V  K+ + D + 
Sbjct: 453 IVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDERVDDATTIVKVGDEVEAKITNIDRKN 512

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K  D       +
Sbjct: 513 RTISLSVKAKDAQDEADAI 531



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + +K     S + ++  D+K+  +S +       
Sbjct: 197 GIVKNLTDYGAFIDLGGIDGLLHITDISWKRVKHPSEVLSVGQDVKVKVLSFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
                R  +   M ++ ++  + L E  P  + +      I +      I  G + +  +
Sbjct: 250 ---SERNRVSLGMKQLGNDPWVDLVERYPIGKRLQGKVTNITDYGCFVEIEEGVEGLVHM 306

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E      N+     V +       +    E                 +         + 
Sbjct: 307 SEMDWTNKNVHPSKVVSLGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFASTHNKGEK 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-D 679
            KG++  + DFG F+   G  DGLVH+S +S   V     V   K+G  +   +L  D +
Sbjct: 367 VKGKIRSITDFGIFIGLDGDIDGLVHLSDISWT-VPGEEAVKQFKKGQELEAVILAIDPE 425

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K ++ ++
Sbjct: 426 RERISLGLKQLEGDS 440


>gi|219669404|ref|YP_002459839.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219539664|gb|ACL21403.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfitobacterium
           hafniense DCB-2]
          Length = 661

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I P  + ++    G+ +R  V +            V ++   + + E A +    +  +
Sbjct: 414 QIQPGYVEDLNQFKGQTLRLRVIEFDPA-----KRRVVLSQKEILQEEQAAKKEHLLATL 468

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   +  G V ++  FGAFV   G  DGL+H+S ++  R+   S+ V  GD V V++L 
Sbjct: 469 QEG-DVVSGVVKRLAQFGAFVDI-GGVDGLLHVSDIAYTRIKHPSEYVNVGDEVEVQILK 526

Query: 677 FD-DRGKIKLSMKVVDQNTGK 696
            D ++GKI L +K +  +  +
Sbjct: 527 VDKEQGKISLGLKQLKPSPWE 547



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S  +   +  +  G+VV++  FGAFV      D L+HISQLS +RV K  DVVK GD
Sbjct: 545 PWESAPEKYALGSLVTGKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGD 604

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V  K+++   +  +I LS++
Sbjct: 605 MVQAKVIECKPEEKRISLSIR 625



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           G      I+E+   K++  ++       +         E             +  G VVK
Sbjct: 256 GASTPDWIIEEVYRKMSTMENKETHEMMNM--------EDWAEGMQNLHRGALVTGTVVK 307

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           +     FV      +G++ + +L+     +TSD+V  GD +   +L   ++ G   LS +
Sbjct: 308 INHDEVFVDLGWKSEGVIALKELTVASDLQTSDIVAIGDQISAVVLRVENEEGNPVLSKR 367

Query: 689 VVDQ 692
             D+
Sbjct: 368 RADE 371


>gi|148251724|ref|YP_001236309.1| 30S ribosomal protein S1 [Bradyrhizobium sp. BTAi1]
 gi|146403897|gb|ABQ32403.1| SSU ribosomal protein S1P [Bradyrhizobium sp. BTAi1]
          Length = 569

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 176 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 233

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 234 DIAWRRVNHPTEVLSIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 282



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 277 DPWQGIEAKYPLQARFHGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 336

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 337 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 367



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R       +      + +G+V    +FG F+   G  DG+VH+S L  +    +  D  K
Sbjct: 363 RNPWEVFVEKHPTGSVVEGEVKNKTEFGLFLGLEGDVDGMVHLSDLDWKLPGEQVIDNYK 422

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K ++ + 
Sbjct: 423 KGDMVKAVVLDVDVEKERISLGIKQLEGDP 452



 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+ V D G  V   G      +  S+L+ +R  + S+    G+ V  +++ FD +
Sbjct: 464 VVTCEVLDVKDGGIDVKIVGTEFSTFIKRSELARDRNDQRSERFAVGEKVDARVIQFDKK 523

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 524 ARKVQVSIKALEVAEEKEAI 543


>gi|312898237|ref|ZP_07757628.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
 gi|310620734|gb|EFQ04303.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
          Length = 149

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 44/79 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  +  FGAFV     + GLVHIS+++ E V    D +K GD   VK+L+ 
Sbjct: 4   EAGNVLEGIVTGITAFGAFVELPDKKVGLVHISEVANEYVKNVHDFLKVGDKTTVKVLNV 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           DDRGKI LS+K       K
Sbjct: 64  DDRGKIGLSIKQAQAGGEK 82


>gi|295109915|emb|CBL23868.1| Ribosomal protein S1 [Ruminococcus obeum A2-162]
          Length = 358

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 14/182 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------K 572
            ++    R  +L        +  ++       V             I +GG        +
Sbjct: 165 RRRIIGNRKQLLLAEKAEKQKELMERIHVGDTVTGTVKNVTDFGAFIDLGGADGLLHISE 224

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQV 627
           +  G VE      N+ D+  V I   +  +I  + +       +          +  G+V
Sbjct: 225 MSWGRVENPKKVFNVGDEVKVLIKEINGDKIALSMKFPEENPWLSAAEDFAVGNVVTGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+ +  KI LS
Sbjct: 285 ARMTDFGAFVELAPGIDALLHVSQISREHVAKPSDVLSIGQEIQAKVVDFNGEDKKISLS 344

Query: 687 MK 688
           MK
Sbjct: 345 MK 346



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I +G V+ V D    ++     DG++  S+ S +     +D V  G
Sbjct: 8   QMLEDSVKTIRNGEIVQGTVIDVKDDEIILNIGYKADGIITKSEYSNDASLVLTDAVHVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D++  K+L   D  G++ L+ K +    G
Sbjct: 68  DSMEAKVLKVNDGEGQVILTYKRLAAEKG 96


>gi|270160087|ref|ZP_06188743.1| ribosomal protein S1 [Legionella longbeachae D-4968]
 gi|289165134|ref|YP_003455272.1| 30S ribosomal protein S1 [Legionella longbeachae NSW150]
 gi|269988426|gb|EEZ94681.1| ribosomal protein S1 [Legionella longbeachae D-4968]
 gi|288858307|emb|CBJ12175.1| 30S ribosomal protein S1 [Legionella longbeachae NSW150]
          Length = 559

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +         E     + +D      + S      E +    +++ +    
Sbjct: 132 PGSLVDVRPVRDPSYLEGKELEFKVIKMDLKRNNIVVSRRAVVEEESSADRQALLESLHD 191

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +   G V  + D+GAF+   G  DGL+HI+ +S +RV   S+V+  G  + VK+L FD 
Sbjct: 192 GQELHGIVKNLTDYGAFIDL-GGIDGLLHITDISWKRVKHPSEVLSVGQDIKVKVLSFDS 250

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L MK +  +    +V
Sbjct: 251 ERNRVSLGMKQLGNDPWVDLV 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 17/197 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M +        R  ++ E S    ++ L+       +  +          I +GG     
Sbjct: 159 MDLKRNNIVVSRRAVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNK 621
               +    V+     +++  D  VK+ S        +        +    + +   + K
Sbjct: 219 HITDISWKRVKHPSEVLSVGQDIKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPIGK 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
             +G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L+ D +
Sbjct: 279 KLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVALGDVVDVMVLEIDEE 338

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L MK    N  +
Sbjct: 339 RRRISLGMKQCVGNPWQ 355



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S  D      I KG V  V      V       G + +S+LS ERV   + VVKEGD + 
Sbjct: 443 SFVDEYTKGAIVKGTVTAVDPKTVTVALADDITGTIRVSELSDERVDDATTVVKEGDEIE 502

Query: 672 VKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            K+++ D + + I LS+K  D       +
Sbjct: 503 AKIINVDRKNRSITLSVKAKDAQDEADAI 531



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 95/256 (37%), Gaps = 38/256 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + +K     S + ++  D+K+  +S +       
Sbjct: 197 GIVKNLTDYGAFIDLGGIDGLLHITDISWKRVKHPSEVLSVGQDIKVKVLSFD------- 249

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
                R  +   M ++ ++  + L E  P  + +      I +      I  G + +  +
Sbjct: 250 ---SERNRVSLGMKQLGNDPWVDLVERYPIGKKLQGKVTNITDYGCFVEIEEGVEGLVHM 306

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E      N+     V +       +    E                 +         + 
Sbjct: 307 SEMDWTNKNVHPSKVVALGDVVDVMVLEIDEERRRISLGMKQCVGNPWQQFAASYNKGQK 366

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
             G++  + DFG F+   G  DGLVH+S +S        + V   K+G  +   +L  D 
Sbjct: 367 VSGKIRSITDFGIFIGLDGDIDGLVHLSDISWTTPG--EEAVKQYKKGQEIEAVILAIDP 424

Query: 679 DRGKIKLSMKVVDQNT 694
           +R +I L +K ++ ++
Sbjct: 425 ERERISLGIKQLEGDS 440


>gi|319780059|ref|YP_004139535.1| ribosomal protein S1 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165947|gb|ADV09485.1| ribosomal protein S1 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 565

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 28/277 (10%)

Query: 449 MDAGVPISKPVAGI---AMGLVKDGDDFIILSDISGDEDHLGHMDF------KVAGTDSG 499
           M A  P     A +   +      G+  ++   I+  E  +  +D       +V   + G
Sbjct: 1   MSAANPTRDDFASLLEESFTTGHSGEGQVVKGTITAIEKDMAIIDVGLKVEGRVPLKEFG 60

Query: 500 ITAMQMDMKIGGISE---NIMVMALQQAKRGRLHILNEMSKVLSES------RLQLGEFT 550
           +      +K+G   E     +  AL +A   R     E S V  E       R++   F 
Sbjct: 61  VKGKDTTLKVGDTVEVYVERIENALGEAMLSREKARREESWVRLEEKFTKGERVEGVIFN 120

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEI 603
                  +  D     +      IR I + +         ++   D     I  S    +
Sbjct: 121 QVKGGFTVDLDGAVAFLPRSQVDIRPIRDVSPLMHNPQPFEILKMDRRRGNIVVSRRTVL 180

Query: 604 EAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E +R   RS      E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   ++
Sbjct: 181 EESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPTE 239

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           ++  G TV V+++  + +  +I L MK ++ +    I
Sbjct: 240 ILNIGQTVKVQIIRINQETHRISLGMKQLESDPWSEI 276



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     + I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILNIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+   ++G   P  + +      I +      +  G + +  +
Sbjct: 253 RINQETHRISLGMKQLESDPWSEIGTKFPIGKKIKGTVTNITDYGAFVELEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDD----DGTVKIASSSLAEIEAAR-----------EMIRSITDVPEVNKI 622
            E +  K N+        T ++    L    A R              ++      V   
Sbjct: 313 SEMSWTKKNVHPGKILSTTQEVDVVVLEVDPAKRRISLGLKQTLENPWQAFASSHPVGSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +    GD V  ++LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWTRPGEQVIEEYNRGDMVKAQVLDVDIDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++T
Sbjct: 433 ERISLGIKQLAKDT 446



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ER 656
           S   +   +       T  P   KI KG V  + D+GAFV      +GL+H+S++S  ++
Sbjct: 262 SLGMKQLESDPWSEIGTKFPIGKKI-KGTVTNITDYGAFVELEPGIEGLIHVSEMSWTKK 320

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
                 ++     V V +L+ D  + +I L +K   +N  +
Sbjct: 321 NVHPGKILSTTQEVDVVVLEVDPAKRRISLGLKQTLENPWQ 361



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+ V D G  V       +  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 461 VVTCEVIGVKDGGLEVRLVDSGIETFIKRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 521 TRKLQVSIKALEIAEEKEAV 540


>gi|157676002|emb|CAP07842.1| putative transcriptional accessory protein [Neisseria cinerea]
          Length = 773

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 621 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 680

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+ 
Sbjct: 681 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEP 730


>gi|145633476|ref|ZP_01789205.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
 gi|144985845|gb|EDJ92453.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
          Length = 770

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|257867659|ref|ZP_05647312.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257873988|ref|ZP_05653641.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257876567|ref|ZP_05656220.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325571138|ref|ZP_08146710.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
 gi|257801742|gb|EEV30645.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257808152|gb|EEV36974.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257810733|gb|EEV39553.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325156223|gb|EGC68409.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
          Length = 404

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 581 TGAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           T   V I+  +  + ++  ++ E E A++    + D+ E  ++ +G+V ++ DFGAFV  
Sbjct: 167 TFKIVEIEPSENRLILSHKAVVEAEKAKQKEALLADLYEGQEV-EGKVARLTDFGAFVDL 225

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G  DGLVH+S++S   V K SDV+  GDTV V++L  D D+ ++ LS+K         I
Sbjct: 226 -GGIDGLVHVSEISHGHVGKPSDVLSVGDTVNVRILSVDADKERVSLSIKDTLPGPWTNI 284



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V ++  FGAFV      +GL+HISQ+S + +A   +V++EGD V VK+L+ +
Sbjct: 290 VGSVLTGTVKRLTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLQEGDEVQVKVLEVN 349

Query: 679 D-RGKIKLSMKVVDQ 692
               +I LS+K +++
Sbjct: 350 PSEHRIALSIKALEK 364



 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
           ++ +     + E         +V  I KG+V+ + D  A V   G   +G+V   +LST 
Sbjct: 6   NNQVESGNESMEAALDNFQEVKVGDIVKGEVLAIEDKQAIVGIEGAGVEGVVPAKELSTL 65

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
            V   ++ VK GD + + ++    + K      LS + +D
Sbjct: 66  PVEDINEAVKVGDVLELVVISAIGKDKENGSYLLSKRRLD 105


>gi|53804824|ref|YP_113508.1| S1 RNA-binding domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53758585|gb|AAU92876.1| S1 RNA binding domain protein [Methylococcus capsulatus str. Bath]
          Length = 735

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 70/189 (37%), Gaps = 13/189 (6%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQ----LGEFTPRVEIMAIPPDQ-IRNVI 567
           +   +    +   +        +     E  L       E  P VE +     + IR +I
Sbjct: 499 NREQLRQVSRLGPKAFEQAAGFLRIANGEHPLDASAVHPEAYPVVEKIVRRTGKDIRELI 558

Query: 568 GMGGKVIRGIVEQTGAKV-------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           G    +     EQ   +        +I  +              A  +   +     E  
Sbjct: 559 GNVAFLRSVNAEQFTDERFGLPTVTDILRELEKPGRDPRPEFKTARFKEGVTEPKDLEPG 618

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V  V +FGAFV     +DGLVHIS L+   V    +VVK GD V VK+L+ D  
Sbjct: 619 MRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKVLEVDIP 678

Query: 680 RGKIKLSMK 688
           R +I LSM+
Sbjct: 679 RRRIALSMR 687


>gi|300933903|ref|ZP_07149159.1| putative transcriptional accessory protein [Corynebacterium
           resistens DSM 45100]
          Length = 762

 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            AA           +V  + +G V  V  FGAFV     +DGLVH+S +S   V    DV
Sbjct: 634 TAALAEGVEKISDLKVGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHNFVKDPHDV 693

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           V  G  V VK+++ D+ R ++ LS+++ D+  G+
Sbjct: 694 VHSGQVVKVKVMEVDEARQRVGLSLRLDDEPGGR 727


>gi|330447155|ref|ZP_08310805.1| transcriptional accessory protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491346|dbj|GAA05302.1| transcriptional accessory protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 772

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G +  V +FGAFV     +DGLVHIS LS + V+   +VVK GD V VK+++ D  
Sbjct: 652 MVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQN 693
           R +I +SM++ D+ 
Sbjct: 712 RKRIGMSMRLSDEP 725


>gi|229160548|ref|ZP_04288543.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
 gi|228622958|gb|EEK79789.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
          Length = 382

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK-VVDQN 693
           + G  V VK+L+      +I LS+K  +D+N
Sbjct: 319 EMGQEVTVKVLEVHVAEKRISLSIKEALDEN 349



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELNQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|83591633|ref|YP_425385.1| 30S ribosomal protein S1 [Rhodospirillum rubrum ATCC 11170]
 gi|83574547|gb|ABC21098.1| SSU ribosomal protein S1P [Rhodospirillum rubrum ATCC 11170]
          Length = 573

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 33/273 (12%)

Query: 433 DGSSSMATVCGSS--LALMDAG------VPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           +GS    TV G S   A++D G      VP+ +   G     +K GD   +  +   D  
Sbjct: 30  EGSVLTGTVIGVSGDFAVVDVGLKSEGRVPLKEFSRGGDDAEIKIGDTVDVFVERYED-- 87

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
                         G+  +  D      + N +  A    +R R  I + +    +    
Sbjct: 88  ------------KDGLIVLSRDKARREEAWNELEKAFNDNQRVRGLIHSRVKGGFTVDLS 135

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
               F P  ++   P   I  ++G         +++          G + ++  ++ E  
Sbjct: 136 GAIAFLPGSQVDIRPVRDIGPLLGQPQVFQILKMDRAR--------GNIVVSRRAVLEET 187

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E  + +  + E  +I +G V  + D+GAFV   G  DGL+H++ +S +R+   ++ +
Sbjct: 188 RAEERSKLMETLREG-EILEGVVKNITDYGAFVDL-GGVDGLLHVTDISWKRINHPTEAL 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G TV V+++ F+ +  +I L MK ++ +  +
Sbjct: 246 SIGQTVKVQVIRFNAETQRISLGMKQLEADPWE 278



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 275 DPWEGVAAKYPVGTKFVGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              V V +LD D D+ +I L +K    N  
Sbjct: 335 SQEVEVMILDVDPDKRRISLGLKQTMANPW 364



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           GK++    E     +++D D   K   S   +   A      +   P   ++ +G++  +
Sbjct: 329 GKIVSTSQEVEVMILDVDPD---KRRISLGLKQTMANPWSEFLEGHPIGTEV-EGEIKNI 384

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAK--TSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +FG F+   G  DG++H+S L   R       D  K+GD V  K+LD D ++ +I L +
Sbjct: 385 TEFGLFIGLTGDIDGMIHLSDLDWNRSGDEAVKDY-KKGDVVQAKVLDVDVEKERISLGV 443

Query: 688 KVVDQNT 694
           K + ++ 
Sbjct: 444 KQLGEDP 450



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R  T     N+I    +  V + G  V   GA  G +  S L+ ER  +  +    G
Sbjct: 449 DPYREATADLRKNQIVTCVITMVQENGIEVDVNGAI-GFIRKSDLARERADQRPERFAVG 507

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
           + V  K+++ D    ++ LS+K  + +  K
Sbjct: 508 EKVDAKVINMDKSNRRMTLSIKAREMDEEK 537


>gi|319897916|ref|YP_004136113.1| transcriptional accessory protein [Haemophilus influenzae F3031]
 gi|317433422|emb|CBY81803.1| predicted transcriptional accessory protein [Haemophilus influenzae
           F3031]
          Length = 770

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|291550880|emb|CBL27142.1| Ribosomal protein S1 [Ruminococcus torques L2-14]
          Length = 231

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D      + S+     E  +    +     +V  + KG V  + ++GAFV       
Sbjct: 92  IDVDQANNRLVLSARELLKEKEKAARDAQIASMKVGTVLKGTVETLQNYGAFVKLENGLS 151

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVH+SQ+S +R+   SDV+  GD V VK++   D GKI LSMK +
Sbjct: 152 GLVHVSQISQKRIKMPSDVLTVGDEVEVKVIGIKD-GKISLSMKAL 196


>gi|160892953|ref|ZP_02073742.1| hypothetical protein CLOL250_00485 [Clostridium sp. L2-50]
 gi|156865512|gb|EDO58943.1| hypothetical protein CLOL250_00485 [Clostridium sp. L2-50]
          Length = 716

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I KG V  V+DFGAFV     +DGLVHISQ+S + +    DVV  GD V V
Sbjct: 636 EMKDLKEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLDVVSVGDIVTV 695

Query: 673 KLLDFD-DRGKIKLSMKVVD 691
           K++  D  + +I+L+MK ++
Sbjct: 696 KVMGVDLAKKRIQLTMKGIE 715


>gi|258591883|emb|CBE68186.1| Putative transcriptional accessory protein containing S1
           RNA-binding domain [NC10 bacterium 'Dutch sediment']
          Length = 774

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 19/164 (11%)

Query: 547 GEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
            E  P VE +     + IR VIG  G  +R +  +       DD   +      L E+E 
Sbjct: 576 PEAYPVVERILADIKKSIREVIG-DGNAVRALTPEKYT----DDKFGLPTVQDILTELEK 630

Query: 606 AREMIR------------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                R                  E   + +G V  V +FGAFV     +DGLVH+S L+
Sbjct: 631 PGRDPRPEFKTALFREGVESLMDLESGMMLEGIVTNVTNFGAFVDIGVHQDGLVHVSALA 690

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            + V     +VK GD V VK+L+ D  R +I L+M++ D+ T +
Sbjct: 691 DKFVKDPHSIVKAGDVVKVKVLEVDIARKRIALTMRLSDEVTAR 734


>gi|260550802|ref|ZP_05825009.1| transcriptional accessory protein [Acinetobacter sp. RUH2624]
 gi|260406112|gb|EEW99597.1| transcriptional accessory protein [Acinetobacter sp. RUH2624]
          Length = 795

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 590 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 644

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 645 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 703

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 704 VQVRVMQVDAERNRVNLSMRA 724


>gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4]
 gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
          Length = 382

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFADYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DIVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKETLEE 348



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMNSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  +D   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEDDDLV-LSKRAVDAE 90


>gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012]
 gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam]
 gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis Tsiankovskii-I]
 gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218902709|ref|YP_002450543.1| ribosomal protein S1 [Bacillus cereus AH820]
 gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227815655|ref|YP_002815664.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|229604611|ref|YP_002866001.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066]
 gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B]
 gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum]
 gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94]
 gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus anthracis CI]
 gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam]
 gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis Tsiankovskii-I]
 gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820]
 gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
          Length = 382

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + +
Sbjct: 246 DADTQRISLSIKAAQPGPWENV 267



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEENDLV-LSKRAVDAE 90


>gi|330895742|gb|EGH28031.1| RNA binding S1 [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 741

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG         ++
Sbjct: 511 EKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 565

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 566 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 625

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 626 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 685

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 686 MRMSD-TPGEKI 696


>gi|254723673|ref|ZP_05185459.1| 30S ribosomal protein S1 [Bacillus anthracis str. A1055]
          Length = 382

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + +
Sbjct: 246 DADTQRISLSIKAAQPGPWENV 267



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILLGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEENDLV-LSKRAVDAE 90


>gi|325267676|ref|ZP_08134327.1| YhgF like protein [Kingella denitrificans ATCC 33394]
 gi|324980800|gb|EGC16461.1| YhgF like protein [Kingella denitrificans ATCC 33394]
          Length = 758

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GLVHIS LS + V    +VVK GD V VK+L+ D  R +I L+M++ D+   +
Sbjct: 665 GLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEAGAE 717


>gi|303233848|ref|ZP_07320501.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302495043|gb|EFL54796.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 697

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 101/263 (38%), Gaps = 41/263 (15%)

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E   ++    +  +S AL++        V+GI     K+  D+ I            
Sbjct: 473 EVVEDCVNTVGVNINTASSALLN-------YVSGITKTTAKNIVDYKI------------ 513

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
                    +   T  Q  +K+ GI     V      +      + + ++V  ES  ++ 
Sbjct: 514 --------ENGPFTNRQEILKVKGIGPKAFVQCAGFLRIPESEEILDNTEVHPESY-EIA 564

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           +   + ++  I   ++   + +G   +R I+E+             K       E+    
Sbjct: 565 KQIMKYDLNDIDVKKLSEELEVGEPTLRDIIEELK-----------KPGRDPRDEMPKPV 613

Query: 608 EMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                   D  E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 614 LRQDVLSIDDLEEGMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
            DTV VK++  D +RG + LSMK
Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMK 696


>gi|167039354|ref|YP_001662339.1| hypothetical protein Teth514_0696 [Thermoanaerobacter sp. X514]
 gi|300913994|ref|ZP_07131311.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307725323|ref|YP_003905074.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X513]
 gi|166853594|gb|ABY92003.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
 gi|300890679|gb|EFK85824.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307582384|gb|ADN55783.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X513]
          Length = 140

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ + DFGAF+     + GLVHIS+++   V      +KE D V VK+L  
Sbjct: 4   EVGDVVEGTVLNITDFGAFIQLPEGKTGLVHISEVANTYVKDIRKHLKEHDKVKVKILSM 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  G+I LS+K       K 
Sbjct: 64  DANGRISLSIKKALPKNNKE 83


>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
          Length = 235

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+        ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
             + +AL+DAGVP+     G+   L  DG+  ++L   +  E    
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDPDGN--LVLDPTTKQEKEAR 178



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 148 MRALFCGVTCALDPDGNLVLDPTTKQEK 175


>gi|52426262|ref|YP_089399.1| hypothetical protein MS2207 [Mannheimia succiniciproducens MBEL55E]
 gi|52308314|gb|AAU38814.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 771

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR-GI 577
            A +Q   G + ILN  +  L  S +    +     I+ +    IR+++G    + R   
Sbjct: 545 KAFEQC-AGFMRILNGKNP-LDASGVHPETYAVVENILQVTEQSIRDLMGNSNALRRLDA 602

Query: 578 VEQTGAKV------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
            + T  K       +I  +              A            +   I +G +  V 
Sbjct: 603 TQFTNEKFGLPTVQDIFKELEKPGRDPRGEFKTATFMEGVEEITDLKAGMILEGTITNVT 662

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D  R +I L+M+ +
Sbjct: 663 NFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDVVKVKVLEVDVARRRIALTMR-L 721

Query: 691 DQNTGK 696
           D++  K
Sbjct: 722 DESAVK 727


>gi|330977298|gb|EGH77252.1| RNA binding S1 [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 638

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG         ++
Sbjct: 408 EKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 462

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 463 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 522

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 523 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 582

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 583 MRMSD-TPGEKI 593


>gi|330469194|ref|YP_004406937.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032]
 gi|328812165|gb|AEB46337.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032]
          Length = 495

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWRQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK++D D +R +I LS+K  ++
Sbjct: 345 SEVMVKVIDIDLERRRISLSLKQANE 370



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +R+   +  +  ++ KG V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWR 288



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           +  KV +DD G+            AA +      +      I +G VVKV      +   
Sbjct: 10  SATKVTVDDLGS-------EEAFLAAIDETIKYFND---GDIVEGTVVKVDRDEVLLDIG 59

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +     ++VV  GD +   +L   D  G++ LS K   
Sbjct: 60  YKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQ 111


>gi|328951609|ref|YP_004368944.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328451933|gb|AEB12834.1| RNA binding S1 domain protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 551

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +V   +  +   + I  ++   L      L  F P      +   ++ ++ G  G+ +  
Sbjct: 129 VVELYENGEPVEVTIREKVRGGLVTYIEGLRAFLPAS---QVDIKRVNDLDGFVGQTLPV 185

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            + +   K      G + ++   L E E  R   + +  +    ++ +G VV+V +FG F
Sbjct: 186 KIIELSRK-----KGRIILSRRVLLEEEQKRLRQQVLQSLEPGQEV-EGAVVEVTEFGVF 239

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V+  G  DGLVH S+L+  R     +VV+ GD V  ++L  D +R ++ LS+K +  +  
Sbjct: 240 VNL-GHIDGLVHRSELTWGRFEHPREVVQVGDQVRARVLSVDPERERVNLSIKALTPDPW 298

Query: 696 KPI 698
           + +
Sbjct: 299 ETV 301



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++++  EV +  +G+VV +  FGAF+      +GL+H+S++S  +R    S+V+KE
Sbjct: 296 DPWETVSERYEVGQRVRGKVVGLTPFGAFLEVEPGLEGLIHVSEMSWTKRPKHPSEVLKE 355

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           G+ V   +L  D    ++ L ++    +  K +
Sbjct: 356 GEEVEAVVLRIDPEARRLSLGLRQTMPDPWKEL 388



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + + +      + KG++  V +FG FV      +GLVHIS+L   R+   ++  K+G
Sbjct: 383 DPWKELPEKYPPGTVIKGKITGVTEFGVFVELEPGIEGLVHISELDYARIENPAEQFKKG 442

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           + + V +L  D    +I LS K +    
Sbjct: 443 EELEVVILQIDPVEQRISLSRKRLLPPP 470


>gi|240849755|ref|YP_002971143.1| 30S ribosomal protein S1 [Bartonella grahamii as4aup]
 gi|240266878|gb|ACS50466.1| 30S ribosomal protein S1 [Bartonella grahamii as4aup]
          Length = 566

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E     + +R+    F+       +  D     +      IR I +
Sbjct: 91  SREKARREESWVRLEEK-FNAGARVDGVIFSQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QT-------GAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            +         ++   D     I  S    +E +R   RS      E N+I +G V  + 
Sbjct: 150 VSPLMHNSQSFEILKMDRRRGNIVVSRRTVLEESRAEQRSEIVQNLEENQIVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+V+  G T+ V+++  + D  +I L MK +
Sbjct: 210 DYGAFVGL-GGIDGLLHVTDMAWRRVNHPSEVLTIGQTIKVQIIRINQDTHRISLGMKQL 268

Query: 691 DQNTGKPI 698
           + +  + I
Sbjct: 269 ESDPWESI 276



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI+    + K   G V  + D+G FV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWESISVRYPIGKKITGAVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVEVVVLEIDPSKRRISLGLKQTFENPWE 361



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              +  +   VN   +G+V    +FG F+   G  DG+VH+S L   R   +  D   +G
Sbjct: 359 PWEAFANKFPVNSQIEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKG 418

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
           D V   +LD D ++ +I L +K +
Sbjct: 419 DIVKAVVLDVDIEKERISLGIKQL 442



 Score = 38.7 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 576 GIVEQTGAKVNIDDD----GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
            IV+     V+I+ +    G  +++S  + E  A+ E+ +      EV        V   
Sbjct: 419 DIVKAVVLDVDIEKERISLGIKQLSSDKVGEAAASGELRKGAVVTCEVI------AVNDN 472

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVV 690
           D G  +      +  +  + L+ +R  +  +    G  V  ++  FD + + I +S+K +
Sbjct: 473 DIGVKL-IDHNLETTIRRADLARDRDEQRPERFAIGQKVDARITAFDKKTRKISVSIKAL 531

Query: 691 DQNTGKPIV 699
           +    K  V
Sbjct: 532 EIAEEKEAV 540


>gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
          Length = 382

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFADYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DIVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKETLEE 348



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMNSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  +D   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEDDDLV-LSKRAVDAE 90


>gi|192360642|ref|YP_001983623.1| S1 RNA binding domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686807|gb|ACE84485.1| S1 RNA binding domain protein [Cellvibrio japonicus Ueda107]
          Length = 776

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  ITD+     I +G V  V +FGAFV     +DGLVHIS LS   +    D VK 
Sbjct: 643 QEGVEEITDLVPG-MILEGTVTNVTNFGAFVDIGVHQDGLVHISALSHTFIKDPRDAVKA 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G+ V VK+++ D  R +I LSM+ +D   G+ +
Sbjct: 702 GEIVKVKVMEVDVPRKRIALSMR-LDDTPGEKV 733


>gi|82703189|ref|YP_412755.1| 30S ribosomal protein S1 [Nitrosospira multiformis ATCC 25196]
 gi|82411254|gb|ABB75363.1| SSU ribosomal protein S1P [Nitrosospira multiformis ATCC 25196]
          Length = 571

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++
Sbjct: 203 IVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVISVGDEVTAKVLKFDQEK 261

Query: 681 GKIKLSMKVVDQNTG 695
            ++ L MK + ++  
Sbjct: 262 NRVSLGMKQLTEDPW 276



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
              V+     +++ D+ T K+      +   +        +    ++     +    G+V
Sbjct: 234 WRRVKHPSEVISVGDEVTAKVLKFDQEKNRVSLGMKQLTEDPWVGLSRRYPPHTRLFGKV 293

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
             + D+GAFV      +GLVH+S++    +    S VV+ GD V V +L+ D+ R +I L
Sbjct: 294 SNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKVVQLGDEVEVMILEIDEERRRISL 353

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 354 GMKQCKVNPWED 365



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           ++              +     +GQ+  + DFG F+   G  D
Sbjct: 342 LEIDEERRRISLGMKQCKVN----PWEDFAMNHQKGDKVRGQIKSITDFGVFIGLQGGID 397

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS  +     + V   K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWNQPG--EEAVRNYKKGDEVEAVVLSIDVERERISLGIKQLEGDP 449



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S   V + N I KG V  +   GA +      +G +  S++S +RV      +KEG
Sbjct: 448 DPFNSFVSVHDKNSIVKGTVKSIDAKGAVISLENDVEGYLRASEVSRDRVEDIRSHLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I LS+K  D
Sbjct: 508 DVVEAMIINVDRKNRGINLSIKAKD 532


>gi|302379353|ref|ZP_07267840.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312698|gb|EFK94692.1| Tex-like protein N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 697

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 101/263 (38%), Gaps = 41/263 (15%)

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E   ++    +  +S AL++        V+GI     K+  D+ I            
Sbjct: 473 EVVEDCVNTVGVNINTASSALLN-------YVSGITKTTAKNIVDYKI------------ 513

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
                    +   T  Q  +K+ GI     V      +      + + ++V  ES  ++ 
Sbjct: 514 --------ENGPFTNRQEILKVKGIGPKAFVQCAGFLRIPESEEILDNTEVHPESY-EIA 564

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           +   + ++  I   ++   + +G   +R I+E+             K       E+    
Sbjct: 565 KQIMKYDLNDIDVKKLSEELEVGEPTLRDIIEELK-----------KPGRDPRDEMPKPV 613

Query: 608 EMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                   D  E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 614 LRQDVLSIDDLEEGMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
            DTV VK++  D +RG + LSMK
Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMK 696


>gi|260556886|ref|ZP_05829103.1| transcriptional accessory protein [Acinetobacter baumannii ATCC
           19606]
 gi|260409492|gb|EEX02793.1| transcriptional accessory protein [Acinetobacter baumannii ATCC
           19606]
          Length = 794

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 590 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 644

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 645 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 703

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 704 VQVRVMQVDVERNRVNLSMRA 724


>gi|27375851|ref|NP_767380.1| 30S ribosomal protein S1 [Bradyrhizobium japonicum USDA 110]
 gi|27348989|dbj|BAC46005.1| 30S ribosomal protein S1 [Bradyrhizobium japonicum USDA 110]
          Length = 582

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 189 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 246

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 247 DIAWRRVNHPTEVLSIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 295



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 290 DPWQGIEAKYPLGARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 349

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 350 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 380



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R       +      + +G+V    +FG F+   G  DG+VH+S L  +    +  D  K
Sbjct: 376 RNPWEVFVEGHPTGSVVEGEVKNKTEFGLFLGLEGDVDGMVHLSDLDWKLPGEQVIDNYK 435

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K ++ + 
Sbjct: 436 KGDMVKAVVLDVDVEKERISLGIKQLEGDP 465



 Score = 44.9 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V++V + G  V   G      +  S+L+ +R  + ++    G+ V  +++ FD +
Sbjct: 477 VVTCEVLEVKESGIEVKIAGTDFTTFIKRSELARDRNDQRAERFAVGEKVDARVIQFDKK 536

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 537 ARKVQVSIKALEVAEEKEAI 556


>gi|225387171|ref|ZP_03756935.1| hypothetical protein CLOSTASPAR_00923 [Clostridium asparagiforme
           DSM 15981]
 gi|225046719|gb|EEG56965.1| hypothetical protein CLOSTASPAR_00923 [Clostridium asparagiforme
           DSM 15981]
          Length = 715

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVN 620
           ++   +G+G   +R IV +             K A     E+               +  
Sbjct: 595 KMSEELGVGEITLRDIVSELE-----------KPARDPRDEMPRPILRTDVMDMKDLKPG 643

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + KG V  V+DFGAFV     +DGLVHISQ++   +    + V  GD V VK+L  D  
Sbjct: 644 MVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHPLEAVSVGDVVDVKVLGVDLA 703

Query: 680 RGKIKLSMKVV 690
           + +I L+MK +
Sbjct: 704 KNRISLTMKGL 714


>gi|309972281|gb|ADO95482.1| Probable transcription accessory protein Tex [Haemophilus
           influenzae R2846]
          Length = 770

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|301169284|emb|CBW28881.1| predicted transcriptional accessory protein [Haemophilus influenzae
           10810]
          Length = 770

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|260462840|ref|ZP_05811045.1| ribosomal protein S1 [Mesorhizobium opportunistum WSM2075]
 gi|259031484|gb|EEW32755.1| ribosomal protein S1 [Mesorhizobium opportunistum WSM2075]
          Length = 565

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 11/190 (5%)

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
           +++ ++A+R    +  E      E R++   F        +  D     +      IR I
Sbjct: 89  MLSREKARREESWVRLEEKFTKGE-RVEGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPI 147

Query: 578 VEQTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVK 629
            + +         ++   D     I  S    +E +R   RS      E  ++ +G V  
Sbjct: 148 RDVSPLMHNPQPFEILKMDRRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKN 207

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   ++++  G TV V+++  + +  +I L MK
Sbjct: 208 ITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPTEILNIGQTVKVQIIRINQETHRISLGMK 266

Query: 689 VVDQNTGKPI 698
            ++ +    I
Sbjct: 267 QLESDPWSEI 276



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     + I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILNIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+   ++G   P  + +      I +      +  G + +  +
Sbjct: 253 RINQETHRISLGMKQLESDPWSEIGTKFPIGKKIKGTVTNITDYGAFVELEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDD----DGTVKIASSSLAEIEAAR-----------EMIRSITDVPEVNKI 622
            E +  K N+        T ++    L    A R              ++      V   
Sbjct: 313 SEMSWTKKNVHPGKILSTTQEVDVVVLEVDPAKRRISLGLKQTLENPWQAFASSHPVGSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +    GD V  ++LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWTRPGEQVIEEYNRGDMVKAQVLDVDIDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++T
Sbjct: 433 ERISLGIKQLAKDT 446



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ER 656
           S   +   +       T  P   KI KG V  + D+GAFV      +GL+H+S++S  ++
Sbjct: 262 SLGMKQLESDPWSEIGTKFPIGKKI-KGTVTNITDYGAFVELEPGIEGLIHVSEMSWTKK 320

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
                 ++     V V +L+ D  + +I L +K   +N  +
Sbjct: 321 NVHPGKILSTTQEVDVVVLEVDPAKRRISLGLKQTLENPWQ 361



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 606 AREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSD 662
           A++ +    +  E+ K  +   +V+ V D G  V       +  +  S LS +R  +  +
Sbjct: 443 AKDTVGEAANSGELRKNAVVTCEVIGVKDGGLEVRLVESGIETFIKRSDLSRDRDEQRPE 502

Query: 663 VVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
               G  V  +++ FD + + +++S+K ++    K  V
Sbjct: 503 RFTVGQKVDARVIAFDKKTRKLQVSIKALEIAEEKEAV 540


>gi|311739725|ref|ZP_07713560.1| transcriptional accessory protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305541|gb|EFQ81609.1| transcriptional accessory protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 777

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+S +S + V+   +VV+ G  V VK+++ D +
Sbjct: 641 MILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHKFVSDPHEVVRSGQVVKVKVMEVDVE 700

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I LS++ +D   G+P
Sbjct: 701 RQRIGLSLR-LDDEPGQP 717


>gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
 gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
          Length = 382

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGETLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + +
Sbjct: 246 DADTQRISLSIKAAQPGPWENV 267



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEENDLV-LSKRAVDAE 90


>gi|169825145|ref|YP_001692756.1| transcription accessory protein [Finegoldia magna ATCC 29328]
 gi|167831950|dbj|BAG08866.1| transcription accessory protein [Finegoldia magna ATCC 29328]
          Length = 697

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 101/263 (38%), Gaps = 41/263 (15%)

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           E+ E   ++    +  +S AL++        V+GI     K+  D+ I            
Sbjct: 473 EVVEDCVNTVGVNINTASSALLN-------YVSGITKTTAKNIVDYKI------------ 513

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
                    +   T  Q  +K+ GI     V      +      + + ++V  ES  ++ 
Sbjct: 514 --------ENGPFTNRQEILKVKGIGPKAFVQCAGFLRIPESEEILDNTEVHPESY-EIA 564

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
           +   + ++  I   ++   + +G   +R I+E+             K       E+    
Sbjct: 565 KQIMKYDLNDIDVKKLSEELEVGEPTLRDIIEELK-----------KPGRDPRDEMPKPV 613

Query: 608 EMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                   D  E   I  G V  V+DFGAF+      DGL HIS++S   +    +V + 
Sbjct: 614 LRQDVLSIDDLEEGMIVTGTVRNVVDFGAFIDIGIKEDGLCHISKMSNSYIKNPREVCEV 673

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
            DTV VK++  D +RG + LSMK
Sbjct: 674 SDTVKVKIIGIDKERGLVSLSMK 696


>gi|89895001|ref|YP_518488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Desulfitobacterium hafniense Y51]
 gi|89334449|dbj|BAE84044.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 661

 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I P  + ++    G+ +R  V +            V ++   + + E A +    +  +
Sbjct: 414 QIQPGYVEDLNQFKGQTLRLRVIEFDPA-----KRRVVLSQKEILQEEQAAKKEHLLATL 468

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   +  G V ++  FGAFV   G  DGL+H+S ++  R+   S+ V  GD V V++L 
Sbjct: 469 QEG-DVVSGVVKRLAQFGAFVDI-GGVDGLLHVSDIAYTRIKHPSEYVNVGDEVEVQILK 526

Query: 677 FD-DRGKIKLSMKVVDQNTGK 696
            D ++GKI L +K +  +  +
Sbjct: 527 VDKEQGKISLGLKQLKPSPWE 547



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +   +  +  G+VV++  FGAFV      D L+HISQLS +RV K  DVVK GD
Sbjct: 545 PWEIAPEKYALGSLVTGKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGD 604

Query: 669 TVWVKLLDFD-DRGKIKLSMK 688
            V  K+++   +  +I LS++
Sbjct: 605 MVQAKVIECKPEEKRISLSIR 625



 Score = 41.8 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           G      I+E+   K++  ++       +         E             +  G VVK
Sbjct: 256 GASTPDWIIEEVYRKMSTMENKETHEMMNM--------EDWAEGMQNLHRGALVTGTVVK 307

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           +     FV      +G++ + +L+     +TSD+V  GD +   +L   ++ G   LS +
Sbjct: 308 INHDEVFVDLGWKSEGVIALKELTVASDLQTSDIVAIGDKISAVVLRVENEEGNPVLSKR 367

Query: 689 VVDQ 692
             D+
Sbjct: 368 RADE 371


>gi|302868826|ref|YP_003837463.1| RNA binding S1 domain-containing protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|315504704|ref|YP_004083591.1| RNA binding s1 domain protein [Micromonospora sp. L5]
 gi|302571685|gb|ADL47887.1| RNA binding S1 domain protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315411323|gb|ADU09440.1| RNA binding S1 domain protein [Micromonospora sp. L5]
          Length = 494

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWRQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK++D D +R +I LS+K  ++
Sbjct: 345 SEVMVKVIDIDLERRRISLSLKQANE 370



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +R+   +  +  ++ KG V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWR 288



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +     ++VV  GD +   +L   D 
Sbjct: 40  DIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|217959075|ref|YP_002337623.1| 30S ribosomal protein S1 [Bacillus cereus AH187]
 gi|229138291|ref|ZP_04266886.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
 gi|217064831|gb|ACJ79081.1| ribosomal protein S1 [Bacillus cereus AH187]
 gi|228645183|gb|EEL01420.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
          Length = 382

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + +
Sbjct: 246 DADTQRISLSIKAAQPGPWENV 267



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEEDDLV-LSKRAVDAE 90


>gi|156551057|ref|XP_001606022.1| PREDICTED: similar to CG8241-PA [Nasonia vitripennis]
          Length = 1230

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGL 646
           + +   + S        R          EV KIY G+V  V+ FG FV   G R   +GL
Sbjct: 246 ESSRDESHSRKRSYSNTRSNFSEELKELEVGKIYTGKVANVVPFGCFVQLDGLRKRSEGL 305

Query: 647 VHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VHISQL  E RV   SDVV  G+ V+VK+L+   + K+ LSMK VDQ +G  +
Sbjct: 306 VHISQLRREGRVVNASDVVTRGEKVFVKVLNITGQ-KVSLSMKDVDQESGCDL 357


>gi|77164807|ref|YP_343332.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
 gi|254434282|ref|ZP_05047790.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
 gi|76883121|gb|ABA57802.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
 gi|207090615|gb|EDZ67886.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
          Length = 765

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 562 QIRNVIGMGGKV-----IRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            I  +IG    +        I EQ G     +I  +          A   AA +      
Sbjct: 583 DIHRLIGHSDFLNSLDPALFIDEQFGLPTFQDILRELEKPGRDPRPAFKTAAFKEEIQTL 642

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  +   I +G    V  FGAFV     +DGLVHIS L+   V    ++V  GD V VK+
Sbjct: 643 EDLKPGMILEGVATNVTAFGAFVDVGVHQDGLVHISALADRFVKDPHEIVSAGDIVKVKV 702

Query: 675 LDFDD-RGKIKLSMK 688
           L+ D+ R +I L+M+
Sbjct: 703 LEVDNVRQRIGLTMR 717


>gi|326392709|ref|ZP_08214008.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325991250|gb|EGD49943.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 88

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +      G V  V DFG FV      DGLVH S++S   +    DVV  GD V 
Sbjct: 11  MTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHFSEMSQNYIKHPLDVVSVGDIVK 70

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V++L  D +R +I LSMK
Sbjct: 71  VRVLSVDIERNRISLSMK 88


>gi|90406780|ref|ZP_01214972.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
 gi|90312017|gb|EAS40110.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
          Length = 555

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 522 QQAKRGRLHILNEMS-KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           ++A   +  ++  ++ KV     ++L      +    +    +R+   +  K I   V +
Sbjct: 98  EKAYEDQETVIGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTAHLENKDIEFKVIK 157

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
              K N      V ++  ++ E E + E    + ++ E   + KG V  + D+GAFV   
Sbjct: 158 LDQKRN-----NVVVSRRAVIETENSAEREELLENLQEGQDV-KGIVKNLTDYGAFVDL- 210

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  DGL+HI+ ++ +RV   S++V  GD + VK+L +D +R ++ L +K + ++    I 
Sbjct: 211 GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKYDRERTRVSLGLKQLGEDPWVAIA 270



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  ++   +    E  L+  +    V+ +          + +GG     
Sbjct: 158 LDQKRNNVVVSRRAVIETENSAEREELLENLQEGQDVKGIVKNLTDYGAFVDLGGVDGLL 217

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNK 621
               +    V+     VN+ D+ TVK+          +        +   +I      + 
Sbjct: 218 HITDMAWKRVKHPSEIVNVGDEITVKVLKYDRERTRVSLGLKQLGEDPWVAIAKRYPEST 277

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
              G+V  + D+G FV      +GLVH+S++    +    S VV  GD   V +LD D +
Sbjct: 278 RLTGKVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDMAEVMVLDIDEE 337

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L +K    N  + 
Sbjct: 338 RRRISLGLKQCKANPWEE 355



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   I  G +++    GA V    + +G + ++ +S +RV   S V+K G
Sbjct: 438 DPFNNYLAENKKGSIVTGTILESDAKGAIVTLSDSVEGYIRVADISRDRVEDASTVLKVG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           ++V  K +  D + + I LS+K  D+   K  +
Sbjct: 498 ESVEAKFVGVDRKNRVISLSIKAKDEAEEKEAI 530


>gi|333023225|ref|ZP_08451289.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
 gi|332743077|gb|EGJ73518.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
          Length = 853

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V  FGAF+     +DGLVH+S LS E V    +VVK GD V VK+LD 
Sbjct: 659 EPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKVKVLDV 718

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I L++++ D+
Sbjct: 719 DLPRKRISLTLRLDDE 734


>gi|302338566|ref|YP_003803772.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293]
 gi|301635751|gb|ADK81178.1| ribosomal protein S1 [Spirochaeta smaragdinae DSM 11293]
          Length = 571

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +     +VN I KG V K+ DFGAF+      +GL HIS+LS  +R+    +V+  
Sbjct: 274 DPWLAFEAKYQVNDIVKGTVTKLTDFGAFIELEEGIEGLAHISELSWVKRINHPKEVLNI 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD V V +L +D  +G++ L +K V  N    I 
Sbjct: 334 GDEVDVMILSYDIQQGRVSLGLKQVRPNPWDTIA 367



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 12/152 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGG-KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +  F P  +      +     IG+ G  +I  +      K+ +   G ++   +      
Sbjct: 135 VRGFCPMSKTDVQRVENPDEYIGLKGKFLIDRLYSDNKLKIVLSRRGFMERDIA------ 188

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E          +  +  G V     FGAF+   G  DGL+HI+ +S   V +  D V
Sbjct: 189 ---ERKEKFFSETSIGDVVTGTVKSFTSFGAFIDLGGF-DGLLHINDMSWGHVTRPKDYV 244

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           K+G  V +K++  D +  KI LS+K    +  
Sbjct: 245 KKGQEVELKVIKLDPEEQKINLSLKHFTPDPW 276



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
              +I D   V      +VVK+ + GAFV      DG +H   LS  R +     V+K G
Sbjct: 362 PWDTIADSYPVGTRLTRKVVKITNAGAFVELEEGIDGFLHSDDLSWTRKIKNPGSVLKAG 421

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           + + V ++  D+   +I+L +K ++++  + +
Sbjct: 422 EEIDVVVISVDEESHRIRLGVKQLEEDPWQSL 453



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G V++   E     +++D++           E     +  +S+        + +G+
Sbjct: 411 IKNPGSVLKAGEEIDVVVISVDEESHRIRLGVKQLE----EDPWQSLRKTYPKGSVIEGE 466

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFDDR-GK 682
           +  V DFG FV   G  +GL++   L+      + +V+     G+ +   + D +    +
Sbjct: 467 ITSVTDFGVFVRVPGGIEGLINKFNLTQPGEEVSDEVLSRFSPGEKITCLVTDINPHSQR 526

Query: 683 IKLSMKVVDQN 693
           + LS++   +N
Sbjct: 527 LSLSIREYQRN 537


>gi|159164517|pdb|2EQS|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human
           Atp-Dependent Rna Helicase Dhx8
          Length = 103

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVW 671
            P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +DVV +G  V 
Sbjct: 9   EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVK 68

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VK+L F    K  LSMK VDQ TG+ +
Sbjct: 69  VKVLSFTGT-KTSLSMKDVDQETGEDL 94


>gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
 gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
          Length = 408

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNI----DDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNK 621
           +G G    +   +  G ++++     D    ++  S        RE ++          +
Sbjct: 168 MGSGESPEQRWSKMVGEEIDVCVIEVDRERRRLILSERVATPETRETLKERVIETLAEGE 227

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V  + DFGAFV+  GA DGLVH+S++S +R+   S+V++ G  V VK++  D ++
Sbjct: 228 IRTGRVTSLADFGAFVNISGA-DGLVHLSEISWDRIKHPSEVLQVGQEVKVKVISVDREK 286

Query: 681 GKIKLSMKVVDQNTG 695
            +I LS++    +  
Sbjct: 287 RRIGLSIRQTQGDPW 301



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           + I    +V++   E     +++D +      S    +     +         +V  + +
Sbjct: 260 DRIKHPSEVLQVGQEVKVKVISVDREKRRIGLSIRQTQG----DPWLERAAKYQVGMLVE 315

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
           G + ++  FGAF       +GL+HIS++S +R+    +V+KEGD V ++++  D    +I
Sbjct: 316 GVITRLTKFGAFAKLDEDIEGLIHISEISEKRIEHPKEVLKEGDKVTLRIVKIDPENHRI 375

Query: 684 KLSMKVVD 691
            LS++ VD
Sbjct: 376 GLSLRRVD 383



 Score = 38.7 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 24/164 (14%)

Query: 558 IPPDQIRNVIG------MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA------EIEA 605
           I P QI   +G      + G+ +  I  +    + ++    V +     +          
Sbjct: 53  ITPQQILVSVGTKSEGVISGRELEAIPPEIRETLQVNQKILVYVVRPEDSNGNIVLSYMK 112

Query: 606 AREM--IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV------ 657
           ARE    +    + E  ++Y  ++      G  V   G R G V  SQ+S  R       
Sbjct: 113 AREESDWQKAEQMRETKEVYHSKITGYNKGGLIVPVHGLR-GFVPASQISLSRRASMGSG 171

Query: 658 AKTSDVVK--EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
                      G+ + V +++ D +R ++ LS +V    T + +
Sbjct: 172 ESPEQRWSKMVGEEIDVCVIEVDRERRRLILSERVATPETRETL 215


>gi|28209968|ref|NP_780912.1| hypothetical protein CTC00200 [Clostridium tetani E88]
 gi|28202403|gb|AAO34849.1| ribosomal protein [Clostridium tetani E88]
          Length = 136

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I +G VV + +FGAFV     + GLVHIS++S   V    D +KE D V VK+
Sbjct: 1   MTLKSGNILEGTVVNITNFGAFVEV-DGKTGLVHISEVSDSYVKDIKDYLKENDKVKVKV 59

Query: 675 LDFDDRGKIKLSMKVVDQN 693
           +  D++GKI LS+K  +  
Sbjct: 60  ISVDEKGKISLSIKQAEPQ 78


>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
          Length = 235

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+        ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
             + +AL+DAGVP+     G+   L  DG+  ++L   +  E    
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDSDGN--LVLDPTTKQEKEAR 178



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R++  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEK 175


>gi|55736656|gb|AAV60298.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
 gi|55738547|gb|AAV62188.1| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
          Length = 417

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFG FV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 285 PWDGVEQKLAAGDVIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 344

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ + D  ++ LS+K +++   
Sbjct: 345 DVTVKVLEVNADAERVSLSIKALEERPA 372



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +EA A E  + +    EV  +  G+V ++  F
Sbjct: 165 QFVGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEVGSVVTGKVARLTSF 224

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD + VK+L  D+  G++ LS+K    
Sbjct: 225 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTP 283

Query: 693 NTG 695
              
Sbjct: 284 GPW 286


>gi|54307403|ref|YP_128423.1| hypothetical protein PBPRA0182 [Photobacterium profundum SS9]
 gi|46911823|emb|CAG18621.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 792

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G +  V +FGAFV     +DGLVHIS LS + ++   +VVK GD V VK+++ D  
Sbjct: 660 MILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLQ 719

Query: 680 RGKIKLSMKVVDQN 693
           R +I +SM++ D+ 
Sbjct: 720 RKRIAMSMRMSDEP 733


>gi|330972161|gb|EGH72227.1| RNA binding S1 [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 772

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 599 --DPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|330832708|ref|YP_004401533.1| putative 30S ribosomal protein S1 [Streptococcus suis ST3]
 gi|329306931|gb|AEB81347.1| putative 30S ribosomal protein S1 [Streptococcus suis ST3]
          Length = 401

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   KV   D+   +++ S  A           +        + +G+V ++ DFGAFV 
Sbjct: 241 EEVEVKVLAIDEVEGRVSLSLKATQP---GPWDGVEQKLAAGDVIEGKVKRLTDFGAFVE 297

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                DGLVHISQ+S +RV    D +  G  V VK+L+ +    ++ LS+K +++   
Sbjct: 298 VLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAADERVSLSIKALEERPA 355



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S        A      +     V ++  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPAENRFILSRRDVVEAEAAAARAEVFGKLAVGEVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|237785763|ref|YP_002906468.1| putative transcriptional accessory protein [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758675|gb|ACR17925.1| putative transcriptional accessory protein [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 750

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           +G   +  I+ +      +D  G         A  +   E +  +T       + +G V 
Sbjct: 566 VGIPTVTDIIAE------LDKPGRDPRPEFRTATFKEGIEKVSDLTP----GMVLEGTVT 615

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V  FGAFV     +DGLVH+S +S   V+   DVVK G  V VK++D D DR +I LS+
Sbjct: 616 NVAAFGAFVDIGVHQDGLVHVSAMSDRFVSDPHDVVKSGQVVRVKVMDVDTDRQRIGLSL 675

Query: 688 KVVDQNTGK 696
           ++ D+   +
Sbjct: 676 RLNDEPGER 684


>gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
 gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
          Length = 484

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            + ++  AK+   D     +  S  A +E  +   R+   +     ++ KG V  +++FG
Sbjct: 166 YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLHKGQVRKGTVSSIVNFG 225

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D DR ++ LS+K   ++
Sbjct: 226 AFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQED 284

Query: 694 TGK 696
             +
Sbjct: 285 PWQ 287



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   + +D D   V ++  +  E     +  +       + +I  G
Sbjct: 247 IEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQE-----DPWQVFARTHAIGQIAPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+LS + V     VV  G+ V+VK++D D +R +I 
Sbjct: 302 KVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGEEVFVKIIDIDLERRRIS 361

Query: 685 LSMKVVDQN 693
           LS+K  +++
Sbjct: 362 LSLKQANES 370



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 39  DLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLILSKKRAQ 110


>gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134]
 gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134]
          Length = 382

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGCVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 411

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+ +    I S   A ++        +    +   + +G V  V DFGAFV   GA D
Sbjct: 200 IEINRNRNRLILSERQAAMDVREGRKGELLSALKEGDVREGVVTSVCDFGAFVDIGGA-D 258

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH+S+LS  RV   S+++K GD V V +L  D +R +I LS+K       
Sbjct: 259 GLVHLSELSWSRVKHPSEILKPGDKVQVYVLSIDNERKRIALSLKRTQHEPW 310



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   ++ +   + ++ +G V ++  FGAFV      +GL+H+S++   RV    DV++EG
Sbjct: 308 EPWATVGERYHIGQMVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEG 367

Query: 668 DTVWVKLLDFDD-RGKIKLSMKV 689
           D V  +++  D  R +I LSM+ 
Sbjct: 368 DAVQARIIRIDPARKRIGLSMRQ 390


>gi|84386346|ref|ZP_00989374.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
 gi|84378770|gb|EAP95625.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
          Length = 776

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E   I +G V  V +FGAFV     +DGLVHIS L+   V+   +VVK G+ V 
Sbjct: 643 NSMSDLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPHEVVKTGEIVK 702

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I LSM++ D+ 
Sbjct: 703 VKVMEVDVQRKRIALSMRMKDEP 725


>gi|309790392|ref|ZP_07684957.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
           DG6]
 gi|308227584|gb|EFO81247.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
           DG6]
          Length = 381

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + +D +    + S   A  E  +   + +    +   +  G+V ++ +FGAF+
Sbjct: 164 QEIPLKVIEVDRERNRLVLSERSATQEWRKAQKQRLLTELQPGDVLSGRVNQLTNFGAFI 223

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              GA DGL HIS+LS +RV    +V+  G  V V +++ D DR +I LS++ +  N   
Sbjct: 224 DLGGA-DGLAHISELSWQRVNHPREVLSPGQEVKVVVVEIDRDRERIGLSLRQLQANPWD 282

Query: 697 PI 698
            I
Sbjct: 283 TI 284



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I     + ++  G V  V  FGAFV    A +GL+H S+L  +   +  DV++ G 
Sbjct: 280 PWDTIDQRYSLGQLVSGPVTNVTPFGAFVQVEDAVEGLIHASELDVDPQTQPRDVLQPGQ 339

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQ 692
            V  K++  D  R ++ LS++ V +
Sbjct: 340 QVTAKVISLDRQRQRMGLSLRRVSE 364


>gi|256848385|ref|ZP_05553828.1| RNA-binding S1 domain-containing protein [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714983|gb|EEU29961.1| RNA-binding S1 domain-containing protein [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 167

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 42/76 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E      G+V  + +FGAF+     + GLVHISQ+S   V    DV+  GD V VK++  
Sbjct: 4   EEGAKVTGKVSGITNFGAFIDLADHQTGLVHISQVSNHYVKDIHDVLSVGDEVTVKVIKV 63

Query: 678 DDRGKIKLSMKVVDQN 693
            D GKI LS+K  ++ 
Sbjct: 64  ADDGKIALSIKAAEEQ 79


>gi|169794453|ref|YP_001712246.1| hypothetical protein ABAYE0261 [Acinetobacter baumannii AYE]
 gi|169147380|emb|CAM85241.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
          Length = 794

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 590 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 644

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 645 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 703

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 704 VQVRVMQVDVERNRVNLSMRA 724


>gi|292669439|ref|ZP_06602865.1| RNA-binding protein [Selenomonas noxia ATCC 43541]
 gi|292648892|gb|EFF66864.1| RNA-binding protein [Selenomonas noxia ATCC 43541]
          Length = 148

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 45/80 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  + +FGAFV     + GL+HIS+++   V    D ++E D V  K+L  
Sbjct: 4   EVGSIVEGVVTGITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLRERDQVKAKVLTI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           DDRGKI LS+K +      P
Sbjct: 64  DDRGKIGLSIKALQAKPAVP 83


>gi|138895802|ref|YP_001126255.1| 30S ribosomal protein S1 [Geobacillus thermodenitrificans NG80-2]
 gi|196248690|ref|ZP_03147390.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|134267315|gb|ABO67510.1| 30S ribosomal protein S1 [Geobacillus thermodenitrificans NG80-2]
 gi|196211566|gb|EDY06325.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 387

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P  + +     GK +      T   V +D +    I S      E      + +    
Sbjct: 137 VEPHYVEDFSDYKGKTL------TVKVVELDREKNRVILSHRAVVEEEQERQQKELLSRL 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++  G V ++ DFG FV   G  DGLVHISQLS  RVA  S+VVKEGD V VK+L  
Sbjct: 191 EAGQVLDGVVRRIADFGVFVDVGGF-DGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAV 249

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D ++G++ LS+K       + I
Sbjct: 250 DPEQGRLSLSIKEALPGPWEGI 271



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I++  + + +  G V ++  FGAFV      +GLVH+SQ++  R+    +V+KEGD
Sbjct: 267 PWEGISEKVKPSDVVTGTVKRLASFGAFVEIFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326

Query: 669 TVWVKLLDFDD-RGKIKLSMKV-VDQNTGKP 697
            V  K+LD ++   +I LS++  +++ T  P
Sbjct: 327 EVKAKVLDVNEAEHRISLSIRALLEEETAAP 357



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           E +    +V  V+ I +G+VVK+ D    V    ++  G++ IS+LS   + K SD V  
Sbjct: 3   EEMNVQVNVYGVDDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAV 62

Query: 667 GDTVWVKLLDFD-----DRGKIKLSMKVVD-QNTGKPI 698
           GD V  K+   +     + G + LS K VD +   + +
Sbjct: 63  GDEVTAKVKKVEEGKDGEEGLLILSKKAVDAERAWEEL 100


>gi|302188957|ref|ZP_07265630.1| RNA binding S1 [Pseudomonas syringae pv. syringae 642]
          Length = 772

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|301165923|emb|CBW25496.1| 30s ribosomal protein S1 [Bacteriovorax marinus SJ]
          Length = 592

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKG 625
           +     + + I ++   KV   +     I  S  A ++  R  +R       +   I KG
Sbjct: 175 LRPTRYLDKYIGKKMEFKVIKFNKKRGNIVLSRRAILQEERGKMRQEILDQIQEGMIVKG 234

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAF+   G  DGL+HI+ +S  RV   S+++  GD + VK+L FD D+ ++ 
Sbjct: 235 IVKNITDYGAFIDL-GGIDGLLHITDMSWGRVKHPSNLLNMGDEIDVKILKFDSDKERVS 293

Query: 685 LSMKVVDQNTGK 696
           L +K V  N  +
Sbjct: 294 LGLKQVQPNPWE 305



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + I     V  + + +VV+V DFGAFV      +GLVHIS+LS ERV K  DV+K+G
Sbjct: 476 DPWKKIETRFPVGTVVEAEVVRVTDFGAFVELETGIEGLVHISELSEERVDKPEDVIKKG 535

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D     ++  D D  KI LS+K
Sbjct: 536 DVAKAMVISIDKDAKKIALSIK 557



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++V V D+G F+      +GL+H+S++S   ++   +     G+ +  ++LD D +  +
Sbjct: 319 GEIVSVKDYGVFIELDDGIEGLIHVSEMSWTGKIKNPAKHFNVGERIEAQVLDVDVENKR 378

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K + +N  + I
Sbjct: 379 ISLGLKQLQENPWEAI 394



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I     V     G+V  +++FG F+      D L+H+S LS  ++    ++  KE 
Sbjct: 390 PWEAIEAKYPVGTKVTGKVKSIVEFGMFIDLGEEVDALIHVSDLSWTKKNVNINEEYKED 449

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
             V   +L  D    K  L +K + ++  K I
Sbjct: 450 TEVEAVVLSVDKENSKFCLGIKQLHEDPWKKI 481


>gi|289674467|ref|ZP_06495357.1| RNA binding S1 [Pseudomonas syringae pv. syringae FF5]
          Length = 772

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
 gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|300910087|ref|ZP_07127547.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112]
 gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
 gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|300892735|gb|EFK86095.1| 40S ribosomal protein S1 [Lactobacillus reuteri SD2112]
 gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
          Length = 416

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     V I+      I S          +    +    +   + +G+V ++ +FGAF+
Sbjct: 160 QELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVVEGKVARMTNFGAFI 219

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S++S + V K SDV+  G  V VK+L  D +R +I LS+K        
Sbjct: 220 DL-GGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPWD 278

Query: 697 PI 698
            I
Sbjct: 279 DI 280



 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V+ +  G V ++  FGAFV      +GLVHISQ+S + +A  +DV+K G 
Sbjct: 276 PWDDIEEKAPVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQ 335

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V VK+++ D +  ++ LSMK +++  
Sbjct: 336 EVQVKVINVDPEHQRLGLSMKALEERP 362


>gi|256822123|ref|YP_003146086.1| 30S ribosomal protein S1 [Kangiella koreensis DSM 16069]
 gi|256795662|gb|ACV26318.1| ribosomal protein S1 [Kangiella koreensis DSM 16069]
          Length = 555

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 11/184 (5%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++  A +  +  +  I  ++    +     +  F P      +    +R+   +    + 
Sbjct: 97  VLEAAHEANETVKGVITGKVKGGFTVDVQSIRAFLPGSL---VDVRPVRDTTHLESIELE 153

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             V +   K N      V    + +    +A                 KG V  + D+GA
Sbjct: 154 FKVIKLDQKRN----NVVVSRRAVIESENSAEREELLENLEEGSEL--KGIVKNLTDYGA 207

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +R+   S+VV+ GD + VK+L FD +R ++ L +K +  + 
Sbjct: 208 FVDL-GGIDGLLHITDMAWKRIKHPSEVVQVGDEIDVKVLKFDRERNRVSLGIKQLGSDP 266

Query: 695 GKPI 698
              I
Sbjct: 267 WVDI 270



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +LD D +R
Sbjct: 280 LQGRVTNLTDYGCFVEIEDGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVMVLDIDEER 339

Query: 681 GKIKLSMKVVDQNTG 695
            +I L +K    N  
Sbjct: 340 RRISLGIKQCVPNPW 354



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ N+    G  +  +V      ++ID++                           
Sbjct: 316 IHPSKVVNL----GDEVEVMV------LDIDEERRRISLGIKQCVPN----PWNEFAATH 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   VA    V   K+GD V   +L
Sbjct: 362 NKGDKVSGSIKSITDFGIFIGLDGGIDGLVHLSDISWT-VAGEEAVRDYKKGDEVEAVVL 420

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K VD + 
Sbjct: 421 AVDAERERISLGIKQVDSDP 440



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + KG+V +V   GA +      DG V  S +ST+RV   +  +  GD +  K +  D +
Sbjct: 452 TLVKGKVKEVDAKGALIELADNIDGYVRASDISTDRVEDATKHLSVGDEIEAKFMGVDKK 511

Query: 681 GK-IKLSM 687
            + + LS+
Sbjct: 512 NRNLNLSI 519


>gi|238060171|ref|ZP_04604880.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149]
 gi|237881982|gb|EEP70810.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149]
          Length = 497

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWRQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK++D D +R +I LS+K  ++
Sbjct: 345 SEVMVKVIDIDLERRRISLSLKQANE 370



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +R+   +  +  ++ KG V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWR 288



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +     ++VV  GD +   +L   D 
Sbjct: 40  DIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVLQKEDK 99

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 100 EGRLILSKKRAQ 111


>gi|254520236|ref|ZP_05132292.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913985|gb|EEH99186.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 382

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 558 IPPDQIRNVIGMGGKV-----IRGIVEQTGAKVNIDDD-----GTVKIASSSLAEIEAAR 607
           I    I ++ G+ G +         + +    VNI D      G V + +  ++ I    
Sbjct: 208 IKAGAIVDIGGITGLIHLNDLSWSRIHRAEDVVNIGDKVEVFIGEVDVKNERVSLILKDI 267

Query: 608 E--MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           +     +     ++  I  G+VVK ++FGAFV      +GLVHI++++ E +AK SDV+K
Sbjct: 268 DQDPWETNVSNLKIGGILDGKVVKFLNFGAFVEIFPGVEGLVHINEITDENIAKPSDVLK 327

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            G  V VK+LD D    +I L++K  ++ + +
Sbjct: 328 LGQNVKVKVLDVDKTNKRISLTIKDAEEKSKE 359



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679
            I  G+++ V D    V+   A DG++    L+        +VV +GD + V +L   D 
Sbjct: 26  DILDGEIIDVNDKEVMVNINYAFDGMISKEDLTNTD-KDPREVVNKGDKIKVYVLSPNDG 84

Query: 680 RGKIKLSM-KVV 690
            G +KLS  K +
Sbjct: 85  EGYVKLSRTKAL 96


>gi|222147164|ref|YP_002548121.1| 30S ribosomal protein S1 [Agrobacterium vitis S4]
 gi|221734154|gb|ACM35117.1| 30S ribosomal protein S1 [Agrobacterium vitis S4]
          Length = 573

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    I  E      E R++   F        +  D     +      IR I +
Sbjct: 97  SREKARREESWIKLEAKFEAGE-RVEGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 155

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 156 VTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 215

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G +V V+++  + +  +I L MK +
Sbjct: 216 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILSIGQSVKVQIIRINQETHRISLGMKQL 274

Query: 691 DQNTG 695
           + +  
Sbjct: 275 ESDPW 279



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 209 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQSVKVQII---------- 258

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 259 RINQETHRISLGMKQLESDPWDGIAAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 318

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 319 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPSKRRISLGLKQTLENPWQAFAYSHPAGAE 378

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 379 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVRAVVLDVDVEK 438

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 439 ERISLGIKQLGKDA 452



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 277 DPWDGIAAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 336

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 337 SQEVDVVVLEVDPSKRRISLGLKQTLENPWQ 367


>gi|254409483|ref|ZP_05023264.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183480|gb|EDX78463.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 718

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E ++ ++D+    ++ +G V  V +FGAFV     +DGLVHISQL+   V    ++VK 
Sbjct: 632 KEGVKEMSDLKVGMEL-EGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKEIVKV 690

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           G  V V++L  D++  +I LSM+   Q
Sbjct: 691 GQVVNVRVLSVDEKLKRIGLSMRAAQQ 717


>gi|226942660|ref|YP_002797733.1| transcriptional accessory protein [Azotobacter vinelandii DJ]
 gi|226717587|gb|ACO76758.1| transcriptional accessory protein [Azotobacter vinelandii DJ]
          Length = 770

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 547 GEFTPRVEIMAIPPDQ-IRNVIGMGGKVIR----GIVEQTG---AKVNIDDDGTVKIASS 598
            E  P V+ +A    + IR++IG    + R       ++T       +I  +        
Sbjct: 568 PEAYPVVKRIAADTSRDIRSLIGDSAFLKRLDPAKFTDETFGLPTVTDILKELDKPGRDP 627

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                 A  +         +   I +G V  V +FGAFV     +DGLVHIS LS + V 
Sbjct: 628 RPEFRTAEFQDGVESLKDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVK 687

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              +VVK GD V VK+++ D  R ++ LSM++ D    K
Sbjct: 688 DPYEVVKAGDIVRVKVMEVDIPRNRVGLSMRMGDTPGEK 726


>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
          Length = 206

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
             + +AL+DAGVP+     G+   L  DG    ++ D +  ++         A
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALNSDG---TLVLDPTAKQEKEARAVLTFA 184



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 22/150 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E    R+I  +   +       +    V++ V+      S     + AA  AL+ +G
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVIS--DAGSLLACCLNAACMALVDAG 145

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
           +P      G       +G  VL+P   +++
Sbjct: 146 VPMRALFCGVTCALNSDGTLVLDPTAKQEK 175


>gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
 gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
          Length = 382

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   S+V+
Sbjct: 259 AQPGPWENVAGELKAGDIREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPSEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEEDDLV-LSKRAVDAE 90


>gi|148594010|emb|CAL63574.1| ribosomal protein S1 [Sinorhizobium americanum]
          Length = 403

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGKDA 322



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|304319916|ref|YP_003853559.1| 30S ribosomal protein S1 [Parvularcula bermudensis HTCC2503]
 gi|303298819|gb|ADM08418.1| ribosomal protein S1 [Parvularcula bermudensis HTCC2503]
          Length = 568

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  S+ E + A      + D+ E ++   G V  + D+GAFV      DGL+H++
Sbjct: 172 GNIVVSRRSVLEEDRAEHRQEVVRDLNEGDER-DGVVKNITDYGAFVELAPGVDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            +S  RV   S+V+   DTV VK++  +    +I L MK +  +  
Sbjct: 231 DMSWSRVNHPSEVLNVNDTVSVKIIKINPETSRISLGMKQLQPDPW 276



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++    S +V  
Sbjct: 274 DPWDGVAAKYPIGGKFHGKVTNITDYGAFVELEDGIEGLVHVSEMSWVKKNVPPSSIVSS 333

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
           G  V V +L+ D++  ++ L +K    N  +
Sbjct: 334 GQEVDVMVLEVDEQKRRVSLGLKQTLSNPWE 364



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK--TSDVVKE 666
              S  +   +  I +G+V  + +FG F+      DG+VH+S L  +R       D  ++
Sbjct: 362 PWESFAEKHPIGSIVEGEVKNITEFGLFIGIDDDMDGMVHLSDLDWDRQGDDAIRDY-QK 420

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD V  K+LD D D+ +I L +K V  + 
Sbjct: 421 GDMVKAKVLDVDPDKERISLGIKQVANDP 449



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 623 YKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
               V  V + G  V     G     +  S LS +R  +  +    GD +  +++  D +
Sbjct: 462 VTCTVTAVENGGIEVRVGSDGGPKAFIRKSDLSRDRNEQRPERFAVGDKIDARVIALDPQ 521

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             ++ LS+K  +    K  V
Sbjct: 522 SRRLSLSIKAREIAEEKEAV 541


>gi|115522443|ref|YP_779354.1| RNA-binding S1 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115516390|gb|ABJ04374.1| RNA binding S1 domain protein [Rhodopseudomonas palustris BisA53]
          Length = 784

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 560 PDQIRNVIGMGGKVIR-----GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              I+ VIG    + +      + E  G     D    ++           A E    + 
Sbjct: 588 KSDIKAVIGNADLLRQVRPKDFVDEHFGLPTVTDILRELEKPGRDPRPAFKAAEFKEGVE 647

Query: 615 DVP--EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            +   +V  I +G V  V  FGAFV     +DGLVHIS +S   +    +VVK GD V V
Sbjct: 648 TLKDLKVGMILEGAVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREVVKPGDIVKV 707

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K+L+ D  R +I L++++ D+   K
Sbjct: 708 KVLEVDVARKRIALTLRLDDEVGAK 732


>gi|299144362|ref|ZP_07037442.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518847|gb|EFI42586.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 680

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++         +V  + +G+VV +++FGAF+      DGL+H+SQ+S E V K +D +  
Sbjct: 541 KKPWDIFVSTTQVGDVVEGKVVNLLEFGAFIRLESGVDGLLHVSQISKEHVEKPADKLTM 600

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G+ V VK+ D D +  KI LSMK + ++
Sbjct: 601 GEEVTVKITDIDEENKKISLSMKALIED 628



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ D      + S    E E      +S+ +  +   + +G V ++ +FGAF+
Sbjct: 427 QEFVCDIIDFDKSKRKVVLSRKNVEAEELEAKRKSVYESLQEGDVIEGTVQRLTNFGAFI 486

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              G  DGL+HIS+LS  RV   +DVV  G  V V++L  D+ + +I L +K   Q T K
Sbjct: 487 DL-GGVDGLIHISELSWNRVKHPADVVAPGQKVEVQVLTVDEEKNRIALGLK---QTTKK 542

Query: 697 P 697
           P
Sbjct: 543 P 543



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 590 DGTVKIASSSLA--EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D  +K A SS+   +     E I +        ++ +G+V+ V +    V+     DG++
Sbjct: 263 DSVIKEAVSSMENFDNNEMMEAIENSFKKIRRGEVVEGEVLFVNENEVMVNIGYRSDGII 322

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
              +LS +   K SD+ K GD + V +L  DD  G + LS K V+
Sbjct: 323 SREELSNDPEVKPSDLFKPGDKIQVYVLKIDDGDGNVVLSSKRVE 367


>gi|260587822|ref|ZP_05853735.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia
           hansenii DSM 20583]
 gi|331083824|ref|ZP_08332933.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542087|gb|EEX22656.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Blautia
           hansenii DSM 20583]
 gi|330403249|gb|EGG82809.1| hypothetical protein HMPREF0992_01857 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 361

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
            + I  +  +   R R  I +    ++++      E   R+    +    I+NV   G  
Sbjct: 151 DQEIEFVITEFNPRRRRVIGDRKQLLVAKKEEMKKELFERIHAGDVVEGTIKNVTDFGAF 210

Query: 573 V-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEI-----EAAREMIRSI 613
           +       +  I E +  +V          +  TV I   +  +I        +    + 
Sbjct: 211 IDLGGADGLLHISEMSWGRVENPKKVFKAGEKITVLIKEINGDKIALSLKFEDQNPWLNA 270

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +   V  + +G++ ++ DFGAF+      D L+H+SQ+S   V K SDV+K G  V  K
Sbjct: 271 AEKYAVGNVVEGKIARMTDFGAFIELEPGVDALLHVSQISRAHVEKPSDVLKVGQVVTAK 330

Query: 674 LLDFD-DRGKIKLSMKVVDQ 692
           ++DF+ +  KI LSMKV++ 
Sbjct: 331 VVDFNEEEKKISLSMKVLEP 350



 Score = 37.2 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V +    ++     DG++  ++ S ++      V   G
Sbjct: 8   QMLDETFKTIRNGEVVEGTVIDVKEDQIILNIDYKADGIITRTEYSNDQNLDLRTVAHPG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +  + G
Sbjct: 68  DTMEAKVLKLNDGDGQVLLTYKRLAADKG 96


>gi|255066133|ref|ZP_05317988.1| protein YhgF [Neisseria sicca ATCC 29256]
 gi|255049678|gb|EET45142.1| protein YhgF [Neisseria sicca ATCC 29256]
          Length = 756

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              A+           +V  I +G V  V +FGAFV     +D
Sbjct: 605 LDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQD 664

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GLVHIS LS   V    +VVK GD V VK+L+ D  R +I L+M++ D+
Sbjct: 665 GLVHISALSNRFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDE 713


>gi|238898793|ref|YP_002924475.1| transcriptional accessory protein, RNA binding S1 domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466553|gb|ACQ68327.1| transcriptional accessory protein, RNA binding S1 domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 768

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  +  FGAF+     +DGLVHIS ++ + V     ++K GD V VK+L  D +
Sbjct: 645 MILQGSVTNITHFGAFIDIGVHQDGLVHISSMANQFVTDPHQLIKTGDIVQVKVLSIDME 704

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSM++ +Q   K
Sbjct: 705 RKRIALSMRLDEQIADK 721


>gi|148381469|ref|YP_001256010.1| putative general stress protein [Clostridium botulinum A str. ATCC
           3502]
 gi|153931561|ref|YP_001385844.1| hypothetical protein CLB_3610 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934848|ref|YP_001389251.1| hypothetical protein CLC_3507 [Clostridium botulinum A str. Hall]
 gi|153938517|ref|YP_001392883.1| hypothetical protein CLI_3749 [Clostridium botulinum F str.
           Langeland]
 gi|168180998|ref|ZP_02615662.1| putative general stress protein [Clostridium botulinum NCTC 2916]
 gi|170756411|ref|YP_001783169.1| hypothetical protein CLD_0954 [Clostridium botulinum B1 str. Okra]
 gi|170761451|ref|YP_001788869.1| hypothetical protein CLK_2998 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226950985|ref|YP_002806076.1| putative general stress protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290953|emb|CAL85089.1| putative RNA binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927605|gb|ABS33105.1| putative RNA-binding protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930762|gb|ABS36261.1| putative RNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152934413|gb|ABS39911.1| putative general stress protein [Clostridium botulinum F str.
           Langeland]
 gi|169121623|gb|ACA45459.1| putative RNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169408440|gb|ACA56851.1| putative RNA-binding protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182668179|gb|EDT80158.1| putative general stress protein [Clostridium botulinum NCTC 2916]
 gi|226843689|gb|ACO86355.1| putative general stress protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|295320860|gb|ADG01238.1| putative general stress protein [Clostridium botulinum F str.
           230613]
 gi|322807854|emb|CBZ05429.1| RNA binding protein, contains ribosomal protein S1 domain
           [Clostridium botulinum H04402 065]
          Length = 134

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV + +FGAFV   G + GLVHIS++S   V    + +KE D V VK++  DD+G
Sbjct: 8   ILEGTVVNITNFGAFVEIEG-KTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKG 66

Query: 682 KIKLSMKVVDQN 693
           KI LS+K   Q 
Sbjct: 67  KISLSIKQAMQQ 78


>gi|13474344|ref|NP_105912.1| 30S ribosomal protein S1 [Mesorhizobium loti MAFF303099]
 gi|14025097|dbj|BAB51698.1| ribosomal protein S1 [Mesorhizobium loti MAFF303099]
          Length = 565

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 28/277 (10%)

Query: 449 MDAGVPISKPVAGI---AMGLVKDGDDFIILSDISGDEDHLGHMDF------KVAGTDSG 499
           M A  P     A +   +      G+  ++   I+  E  +  +D       +V   + G
Sbjct: 1   MSAANPTRDDFASLLEESFTTGHSGEGQVVKGTITAIEKDMAIIDVGLKVEGRVPLKEFG 60

Query: 500 ITAMQMDMKIGGISE---NIMVMALQQAKRGRLHILNEMSKVLSES------RLQLGEFT 550
           +      +K+G   E     +  AL +A   R     E S V  E       R++   F 
Sbjct: 61  VKGKDTTLKVGDTVEVYVERIENALGEAMLSREKARREESWVRLEEKFTKGERVEGVIFN 120

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEI 603
                  +  D     +      IR I + +         ++   D     I  S    +
Sbjct: 121 QVKGGFTVDLDGAVAFLPRSQVDIRPIRDVSPLMHNPQPFEILKMDRRRGNIVVSRRTVL 180

Query: 604 EAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E +R   RS      E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   ++
Sbjct: 181 EESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPTE 239

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           ++  G TV V+++  + +  +I L MK ++ +    I
Sbjct: 240 ILNIGQTVKVQIIRINQETHRISLGMKQLESDPWSEI 276



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 97/254 (38%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     + I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPTEILNIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+   ++G   P  + +      I +      +  G + +  +
Sbjct: 253 RINQETHRISLGMKQLESDPWSEIGTKFPIGKKIKGTVTNITDYGAFVELEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDD----DGTVKIASSSLAEIEAAR-----------EMIRSITDVPEVNKI 622
            E +  K N+        T ++    L    A R               +      V   
Sbjct: 313 SEMSWTKKNVHPGKILSTTQEVDVVVLEVDPAKRRISLGLKQTLENPWEAFARNHPVGSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +    GD V  ++LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWTRPGEQVIEEYNRGDMVKAQVLDVDIEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++T
Sbjct: 433 ERISLGIKQLARDT 446



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ER 656
           S   +   +       T  P   KI KG V  + D+GAFV      +GL+H+S++S  ++
Sbjct: 262 SLGMKQLESDPWSEIGTKFPIGKKI-KGTVTNITDYGAFVELEPGIEGLIHVSEMSWTKK 320

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
                 ++     V V +L+ D  + +I L +K   +N  +
Sbjct: 321 NVHPGKILSTTQEVDVVVLEVDPAKRRISLGLKQTLENPWE 361



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 606 AREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSD 662
           AR+ +       E+ K  +   +V+ V D G  V       +  +  S LS +R  +  +
Sbjct: 443 ARDTVGEAATSGELRKNAVVTCEVIGVKDGGLEVRLVDSGIETFIKRSDLSRDRDEQRPE 502

Query: 663 VVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
               G  V  +++ FD + + +++S+K ++    K  V
Sbjct: 503 RFTVGQKVDARVIAFDKKTRKLQVSIKALEIAEEKEAV 540


>gi|195941060|ref|ZP_03086442.1| hypothetical protein EscherichcoliO157_32501 [Escherichia coli
           O157:H7 str. EC4024]
          Length = 199

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V     VVK GD V VK+L+ D  
Sbjct: 75  MVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQ 134

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M+ +D+  G
Sbjct: 135 RKRIALTMR-LDEQPG 149


>gi|297156040|gb|ADI05752.1| transcription accessory protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 796

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 18/145 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDV 616
           D + ++IG    + +   EQ      +DD   +   +  L E+E      R   ++ T  
Sbjct: 587 DDVTSLIGNTAVLRKLRPEQF-----VDDTFGLPTVTDILKELEKPGRDPRPAFKTATFK 641

Query: 617 PEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             V KI         +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD
Sbjct: 642 EGVEKIGDLAAGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGD 701

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQ 692
            V VK+LD D  R +I L++++ D+
Sbjct: 702 IVRVKVLDVDIPRKRISLTLRLDDE 726


>gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 393

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHAAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|167525162|ref|XP_001746916.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774696|gb|EDQ88323.1| predicted protein [Monosiga brevicollis MX1]
          Length = 375

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD 662
            A R   +    +P++ ++Y G V  V  FG FV   G   +GL+H+SQLS  RV     
Sbjct: 42  RAVRFERQQHEPLPKLYRVYLGVVKSVKPFGGFVELDGFTHEGLLHVSQLSKFRVDDVES 101

Query: 663 VVKEGDTVWVKLLDFDD--RGKIKLSMKVVDQNTG 695
           V++ G  V+VK+++  +    +I LS+K VDQ  G
Sbjct: 102 VLQVGQQVFVKVIEVGEPPEHRIALSIKTVDQRNG 136


>gi|123430773|ref|XP_001307952.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
 gi|121889607|gb|EAX95022.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
          Length = 125

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I +G V KV  FGAFV     + GLVHIS+++   V   ++ + EGD V VK+L  D+R
Sbjct: 7   DIVEGVVTKVAKFGAFVDLKDGKSGLVHISEIADTFVKNINNHISEGDEVKVKVLSIDER 66

Query: 681 GKIKLSMKV 689
           GKI LS+K 
Sbjct: 67  GKIALSIKD 75


>gi|229189679|ref|ZP_04316693.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
 gi|228593728|gb|EEK51533.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|206974887|ref|ZP_03235802.1| ribosomal protein S1 [Bacillus cereus H3081.97]
 gi|229195798|ref|ZP_04322558.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
 gi|206746906|gb|EDZ58298.1| ribosomal protein S1 [Bacillus cereus H3081.97]
 gi|228587695|gb|EEK45753.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + +
Sbjct: 246 DADTQRISLSIKAAQPGPWENV 267



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGTVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEEDDLV-LSKRAVDAE 90


>gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264]
 gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264]
 gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|110803195|ref|YP_699443.1| transcription accessory protein [Clostridium perfringens SM101]
 gi|110683696|gb|ABG87066.1| RNA-binding protein [Clostridium perfringens SM101]
          Length = 720

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDIVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
 gi|21759413|sp|Q9CRA8|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
           Full=Exosome component 5; AltName: Full=Ribosomal
           RNA-processing protein 46
 gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
 gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
 gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
          Length = 235

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+        ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
             + +AL+DAGVP+     G+   L  DG+  ++L   +  E    
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDSDGN--LVLDPTTKQEKEAR 178



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R++  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEK 175


>gi|117923488|ref|YP_864105.1| 30S ribosomal protein S1P [Magnetococcus sp. MC-1]
 gi|117607244|gb|ABK42699.1| SSU ribosomal protein S1P [Magnetococcus sp. MC-1]
          Length = 570

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 15/185 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A    K     I+ ++    +     L  F P  ++   P   I  +          
Sbjct: 108 LEEAFNDGKTVDGRIMGKVKGGYTVDLGGLAAFLPGSQVDVRPVHDISRL---------- 157

Query: 577 IVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFG 634
             E+T    +   D     I  S    IE  RE  RS          +  G V  + D+G
Sbjct: 158 -QEETQPFDILKMDRRRGNIVVSRRTVIEKHRENARSALLETLHEGMVLDGIVKNITDYG 216

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGL+HI+ +S +RV   S VV  GDTV V+++ F+ D  +I L MK +  +
Sbjct: 217 AFVDL-GGLDGLLHITDMSWKRVKHPSAVVNVGDTVTVQVIKFNSDTQRISLGMKQLLID 275

Query: 694 TGKPI 698
             + I
Sbjct: 276 PWEGI 280



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
            +    I         + G V  + D+G+FV      +GL H+S+L+  ++    S +++
Sbjct: 274 IDPWEGIGAKYPAGAKFSGHVTNITDYGSFVELEPGVEGLAHVSELTWTKKNIHPSKILE 333

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
               V V +LD D DR +I L +K   +N  +
Sbjct: 334 VNQIVEVMVLDVDADRRRISLGIKQCQENPWE 365



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 19/142 (13%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P +I  V          IVE     V+ D                       +     
Sbjct: 326 IHPSKILEV--------NQIVEVMVLDVDADRRRISLGIKQCQE------NPWEAFATSH 371

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK---EGDTVWVKL 674
            V  + KG++  + +FG FV   G  DGLVH+S ++ +      +V+K   +G  V   +
Sbjct: 372 PVGAMVKGEIKNITEFGLFVGLEGDIDGLVHLSDITWD-TNAGEEVLKDFQKGQEVEAMV 430

Query: 675 LDFD-DRGKIKLSMKVVDQNTG 695
           L  D D+ +I L +K    +  
Sbjct: 431 LSLDPDKERISLGLKQAQPDAW 452



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G+V +V+  G  V      DG +  ++ S +    T+  ++    V  +++  D + 
Sbjct: 464 VVMGKVKEVLSSGVLVQLADEVDGHIRKAEFSQDDREGTNLTLET--EVECRVMQVDRQK 521

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           + I LS+K ++    +  +
Sbjct: 522 RKISLSIKAMEVQQERDAI 540


>gi|332995759|gb|AEF05814.1| transcriptional accessory protein [Alteromonas sp. SN2]
          Length = 790

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + ++   DVVK GD V VK+L+ D  
Sbjct: 650 MILEGVVSNVANFGAFVDVGVHQDGLVHISALTNKFISDPRDVVKAGDIVKVKVLEVDVP 709

Query: 680 RGKIKLSMKVVDQNT 694
           R +I  +M++ D  T
Sbjct: 710 RKRISFTMRLEDTPT 724


>gi|330952080|gb|EGH52340.1| RNA binding S1 [Pseudomonas syringae Cit 7]
          Length = 772

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
 gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EIGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEEDDLV-LSKRAVDAE 90


>gi|66043527|ref|YP_233368.1| RNA binding S1 [Pseudomonas syringae pv. syringae B728a]
 gi|63254234|gb|AAY35330.1| RNA binding S1 [Pseudomonas syringae pv. syringae B728a]
          Length = 772

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     ++     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|317131356|ref|YP_004090670.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469335|gb|ADU25939.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 143

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV  + +G+V  +  FGAFV   G + G+VHIS+++   V +  D V+E  TV VK+
Sbjct: 1   MQLEVGAVLEGKVTGITKFGAFVELPGGKTGMVHISEVAPTFVKEIRDFVQENQTVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTG--KPIV 699
           L   D GK+ LSMK V+      +P+ 
Sbjct: 61  LAITDDGKVSLSMKRVEAAPAPRRPVA 87


>gi|184159741|ref|YP_001848080.1| transcriptional accessory protein [Acinetobacter baumannii ACICU]
 gi|239502002|ref|ZP_04661312.1| transcriptional accessory protein [Acinetobacter baumannii AB900]
 gi|332850219|ref|ZP_08432582.1| Tex-like protein [Acinetobacter baumannii 6013150]
 gi|332868814|ref|ZP_08438419.1| Tex-like protein [Acinetobacter baumannii 6013113]
 gi|332874243|ref|ZP_08442163.1| Tex-like protein [Acinetobacter baumannii 6014059]
 gi|183211335|gb|ACC58733.1| Transcriptional accessory protein [Acinetobacter baumannii ACICU]
 gi|322509654|gb|ADX05108.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
 gi|323519674|gb|ADX94055.1| transcriptional accessory protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730863|gb|EGJ62171.1| Tex-like protein [Acinetobacter baumannii 6013150]
 gi|332733128|gb|EGJ64326.1| Tex-like protein [Acinetobacter baumannii 6013113]
 gi|332737527|gb|EGJ68434.1| Tex-like protein [Acinetobacter baumannii 6014059]
          Length = 782

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 578 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 632

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 633 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 691

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 692 VQVRVMQVDVERNRVNLSMRA 712


>gi|148594060|emb|CAL63599.1| ribosomal protein S1 [Sinorhizobium kostiense]
 gi|148594062|emb|CAL63600.1| ribosomal protein S1 [Sinorhizobium kostiense]
 gi|148594068|emb|CAL63603.1| ribosomal protein S1 [Sinorhizobium kostiense]
          Length = 403

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVRAVVLDVDVEK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGRDA 322



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|315924878|ref|ZP_07921095.1| YhgF like protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621777|gb|EFV01741.1| YhgF like protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 716

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 20/189 (10%)

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           IT  +  +   GI       +   A      +    + +      +  +   R     + 
Sbjct: 545 ITGGEEVLDNTGIHPE----SYPAAHALMDRLSLTPADLKPARIRETAKTLRR-----VD 595

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +     +G+G   ++ ++ +                       E   +      D  + 
Sbjct: 596 VEATARELGIGEPTLQDMIAELCK----------PGRDPRDEAPEPILKQDVLSLDDLKP 645

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           +   KG V  V+DFGAFV     +DGLVHISQ+S   V   SDV+  GD V VK+L  D 
Sbjct: 646 DMALKGTVRNVVDFGAFVDIGVHQDGLVHISQISDRYVKHPSDVLSVGDVVTVKVLSVDK 705

Query: 679 DRGKIKLSM 687
            R +I L+M
Sbjct: 706 PRSRIALTM 714


>gi|77918517|ref|YP_356332.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544600|gb|ABA88162.1| transcriptional accessory protein [Pelobacter carbinolicus DSM
           2380]
          Length = 759

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +R I+D+ E   I  G V  V  FGAFV     +DGLVH+S L+   V    +VV+ 
Sbjct: 637 RDDVREISDLKEG-MILSGTVTNVAAFGAFVDIGVHQDGLVHVSHLAHRFVKDPGEVVRV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD V VK+L  D  R +I LS+K      
Sbjct: 696 GDIVKVKVLSVDAARKRIGLSIKEAQPEP 724


>gi|320107706|ref|YP_004183296.1| RNA-binding S1 domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319926227|gb|ADV83302.1| RNA binding S1 domain protein [Terriglobus saanensis SP1PR4]
          Length = 594

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +++D  +     +  E    R++  +         I  G V  + D+GAF+   G  DGL
Sbjct: 197 VEEDVVIDRRVVTEEEALKGRDLRFAAMQE---GAIVDGTVRSLADYGAFIDL-GGIDGL 252

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +H+S ++  R+   SDV++ G TV VK+L  D +  +I L +K +  +    + 
Sbjct: 253 LHVSDMAWSRIGNPSDVLEVGQTVQVKVLKIDPESRRISLGLKQLQPHPWDDVA 306



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +      +  +V  + +G VV +M FGAFV       GLVHIS++ +  R+   SDV++ 
Sbjct: 387 DPWVEAAERIKVGSVVEGPVVTIMKFGAFVQIAEGVQGLVHISEITAERRLNHPSDVLRV 446

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVV 690
           G+ V  ++L+ D   + ++LS+K +
Sbjct: 447 GEVVKAQVLEIDKEKRQLRLSIKQL 471



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
                + +   V    +G V +  +FGAFV      +GLVH+S++S  +R+ K ++V+  
Sbjct: 300 HPWDDVAEKFAVGDRVRGTVTRTAEFGAFVEIAPGIEGLVHLSEMSWSKRIHKATEVLNV 359

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDTV   +L    +  +I L +K    +  
Sbjct: 360 GDTVDALILAIGVEDRRISLGLKQALGDPW 389


>gi|299116904|emb|CBN75014.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 643

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 6/89 (6%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +PEV  ++KG+VVK   FGAF+   G  + GLVH SQ+++ RV   +DV K GDTV+ K+
Sbjct: 234 LPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKV 293

Query: 675 LDF----DDRG-KIKLSMKVVDQNTGKPI 698
           ++     D R  +I LSMK+V+Q  GK +
Sbjct: 294 IEVTDGADPREQRIALSMKLVNQADGKDL 322


>gi|89076064|ref|ZP_01162424.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34]
 gi|89048216|gb|EAR53798.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34]
          Length = 772

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G +  V +FGAFV     +DGLVHIS LS + ++   +VVK GD V VK+++ D  
Sbjct: 652 MVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLP 711

Query: 680 RGKIKLSMKVVDQN 693
           R +I +SM++ D+ 
Sbjct: 712 RKRIGMSMRLSDEP 725


>gi|218896527|ref|YP_002444938.1| ribosomal protein S1 [Bacillus cereus G9842]
 gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842]
 gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHAAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|159038909|ref|YP_001538162.1| 30S ribosomal protein S1 [Salinispora arenicola CNS-205]
 gi|157917744|gb|ABV99171.1| RNA binding S1 domain protein [Salinispora arenicola CNS-205]
          Length = 493

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWRQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK++D D +R +I LS+K  ++
Sbjct: 345 SEVMVKVIDIDLERRRISLSLKQANE 370



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +R+   +  +  ++ KG V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWR 288



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           +  KV +DD G+            AA +      +      I +G VVKV      +   
Sbjct: 10  SATKVTVDDLGS-------EEAFLAAIDETIKYFND---GDIVEGTVVKVDRDEVLLDIG 59

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +     ++VV  GD +   +L   D  G++ LS K   
Sbjct: 60  YKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQ 111


>gi|34498501|ref|NP_902716.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
 gi|34104356|gb|AAQ60715.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
          Length = 563

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL+        I  ++   L+     +  F P      +    +++      K I  
Sbjct: 102 LEEALEAGTILSGMISGKVKGGLTVMVNGIRAFLPGSL---VDVRPVKDTTPYENKQIEF 158

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V    S L E     E  +++ +  +   + KG V  + D+GAF
Sbjct: 159 KVIKLDRKRN----NVVVSRRSVLEETL--GEERKALLETLKEGAVIKGIVKNITDYGAF 212

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++ ++ L +K + ++  
Sbjct: 213 VDL-GGIDGLLHITDLAWRRVKHPSEVLAVGDEVEAKVLKFDQEKNRVSLGLKQLGEDPW 271



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S VV+ GD V V +L+ D DR +
Sbjct: 286 GKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQVGDEVEVMILEIDEDRRR 345

Query: 683 IKLSMKVVDQNTG 695
           I L MK    N  
Sbjct: 346 ISLGMKQCLANPW 358



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P ++  V   G +V   I+E       ID+D                        D  
Sbjct: 320 VHPSKVVQV---GDEVEVMILE-------IDEDRRRISLGMKQCLAN----PWNEFADNF 365

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                 KG +  + DFG FV   G  DGLVH+S LS     +   V   K+GD V   +L
Sbjct: 366 HKGDKLKGAIKSITDFGVFVGLPGGIDGLVHLSDLSWNEAGE-EAVRKFKKGDEVEAVVL 424

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D ++ +I L +K ++ + 
Sbjct: 425 SIDVEKERISLGIKQLEGDP 444



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   + KG V  V   GA +      +G +  S+LS +RV     V+K+G
Sbjct: 443 DPFNNFVAMNDKGALVKGTVKSVDAKGAVIALDADVEGYLRASELSRDRVEDARSVLKDG 502

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   ++  D + + I LS+K  D
Sbjct: 503 DAVEAVIVAVDRKSRNISLSIKAKD 527


>gi|229587823|ref|YP_002869942.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens
           SBW25]
 gi|229359689|emb|CAY46537.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens
           SBW25]
          Length = 774

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         ++  I +G V  V +FGAFV     +DG
Sbjct: 615 DILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           LVHIS LS + +    + VK GD V VK+++ D  R ++ LSM++ D   G+ I
Sbjct: 675 LVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSD-TPGEKI 727


>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
          Length = 235

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVPQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+A  L  DG   ++L   S  E     +
Sbjct: 135 NAACMALVDAGVPMRALFCGVACALDSDGT--LVLDPTSKQEKEARAV 180



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E    R+I  +   +       +    V+  V+      S     + AA  AL+ +G
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVPQVVS--DAGSLLACCLNAACMALVDAG 145

Query: 143 LPFEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
           +P      G       +G  VL+P   +++
Sbjct: 146 VPMRALFCGVACALDSDGTLVLDPTSKQEK 175


>gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVQVAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFADYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKETLEE 348



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMNSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  +D   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEDDDLV-LSKRAVDAE 90


>gi|220930900|ref|YP_002507808.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
 gi|219992210|gb|ACL68813.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
          Length = 124

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G+V  +  FGAFV   G   GL+HIS+++   V    + +K+ DTV VK+++ 
Sbjct: 4   DVGSTVEGKVTGITKFGAFVELPGGDTGLIHISEIANTYVKDVGNYLKKNDTVKVKVINI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           D  GKI LS+K +D  + +
Sbjct: 64  DKDGKIGLSIKRLDNPSDR 82


>gi|148594016|emb|CAL63577.1| ribosomal protein S1 [Sinorhizobium xinjiangense]
 gi|148594028|emb|CAL63583.1| ribosomal protein S1 [Sinorhizobium xinjiangense]
 gi|148594038|emb|CAL63588.1| ribosomal protein S1 [Sinorhizobium fredii]
 gi|148594044|emb|CAL63591.1| ribosomal protein S1 [Sinorhizobium fredii]
 gi|148594046|emb|CAL63592.1| ribosomal protein S1 [Sinorhizobium fredii]
 gi|148594066|emb|CAL63602.1| ribosomal protein S1 [Sinorhizobium fredii]
          Length = 403

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHGHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVEK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGKDA 322



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|145589404|ref|YP_001156001.1| RNA-binding S1 domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047810|gb|ABP34437.1| RNA binding S1 domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 784

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         + + I +G V  V  FGAFV     +DG
Sbjct: 629 DILKELEKPGRDPRPEFTTATFKEGVEKISDLKADMILEGVVTNVAAFGAFVDIGVHQDG 688

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           LVHIS LS   V     VVK G  V VK+L+ D+ R +I L+M++ D+  
Sbjct: 689 LVHISALSNTFVKDPHTVVKAGQVVKVKVLEVDEKRKRIALTMRLSDEAP 738


>gi|77456487|ref|YP_345992.1| RNA binding S1 [Pseudomonas fluorescens Pf0-1]
 gi|77380490|gb|ABA72003.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 774

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG    + R    
Sbjct: 542 EKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRL--- 598

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
               K   D+   +   +  L E+E      R      E  +            I +G V
Sbjct: 599 --DPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V  FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTAFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|264677719|ref|YP_003277625.1| truncated RNA binding S1 [Comamonas testosteroni CNB-2]
 gi|262208231|gb|ACY32329.1| truncated RNA binding S1 [Comamonas testosteroni CNB-2]
          Length = 387

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 18/163 (11%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            E  P VE + +   +  + I   G+V++ +      +   +D          L E+E  
Sbjct: 177 PETYPVVEQIIVSTGKPVDQIMGRGEVLKSL----KPEQFANDKFGAVTIKDILGELEKP 232

Query: 607 REMIR------------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
               R                  +     +G V  V  FGAFV     +DGLVH+SQ+S 
Sbjct: 233 GRDPRPDFVVARFNDGVEDIKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSH 292

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + +    +VVK G  V VK+L+ D DR +I L+MK +D    +
Sbjct: 293 KFIEDAREVVKTGQIVKVKVLEVDVDRKRISLTMK-LDAAPAR 334


>gi|253755709|ref|YP_003028849.1| 30S ribosomal protein S1 [Streptococcus suis BM407]
 gi|251818173|emb|CAZ55971.1| putative 30S ribosomal protein S1 [Streptococcus suis BM407]
          Length = 401

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   KV   D+   +++ S  A           +        + +G+V ++ DFGAFV 
Sbjct: 241 EEVEVKVLAIDEVEGRVSLSLKATQP---GPWDGVEQKLVAGDVIEGKVKRLTDFGAFVE 297

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                DGLVHISQ+S +RV    D +  G  V VK+L+ +    ++ LS+K +++   
Sbjct: 298 VLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAADERVSLSIKALEERPA 355



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       AA      +     V ++  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPAENRFILSRRDVVEAAAAAARAEVFGKLAVGEVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKVIKLEEDDLV-LSKRAVDAE 90


>gi|222095228|ref|YP_002529288.1| 30S ribosomal protein s1 [Bacillus cereus Q1]
 gi|221239286|gb|ACM11996.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
           Q1]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + +
Sbjct: 246 DADTQRISLSIKAAQPGPWENV 267



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGTVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+    + +K++  ++   + LS + VD  
Sbjct: 61  VVELDQILELKVIKLEEDDLV-LSKRAVDAE 90


>gi|30019646|ref|NP_831277.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 14579]
 gi|229126911|ref|ZP_04255922.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
 gi|296502167|ref|YP_003663867.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
 gi|29895190|gb|AAP08478.1| SSU ribosomal protein S1P [Bacillus cereus ATCC 14579]
 gi|228656511|gb|EEL12338.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
 gi|296323219|gb|ADH06147.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|257465084|ref|ZP_05629455.1| predicted transcriptional accessory protein [Actinobacillus minor
           202]
 gi|257450744|gb|EEV24787.1| predicted transcriptional accessory protein [Actinobacillus minor
           202]
          Length = 778

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +V  I +G V  V +FGAFV     +DG
Sbjct: 624 DILKELEKPGRDPRGEFKTATFMEGVEEIKDLKVGMILEGTVTNVANFGAFVDIGVHQDG 683

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS   V     VVK GD V VK+L+ D  R +I L+M+ +D + G+
Sbjct: 684 LVHISMLSNRFVDDPHTVVKAGDVVKVKVLEVDVARKRIALTMR-LDDSAGE 734


>gi|229172235|ref|ZP_04299799.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
 gi|228611223|gb|EEK68481.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKETLEE 348



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+    + +K++  ++   + LS + VD  
Sbjct: 61  VVELDQILELKIIKLEEDDLV-LSKRAVDAE 90


>gi|213158974|ref|YP_002320972.1| RNA binding S1 domain protein [Acinetobacter baumannii AB0057]
 gi|215482042|ref|YP_002324224.1| Protein tex [Acinetobacter baumannii AB307-0294]
 gi|301345046|ref|ZP_07225787.1| hypothetical protein AbauAB0_02357 [Acinetobacter baumannii AB056]
 gi|301512670|ref|ZP_07237907.1| hypothetical protein AbauAB05_13836 [Acinetobacter baumannii AB058]
 gi|301595103|ref|ZP_07240111.1| hypothetical protein AbauAB059_04816 [Acinetobacter baumannii
           AB059]
 gi|213058134|gb|ACJ43036.1| RNA binding S1 domain protein [Acinetobacter baumannii AB0057]
 gi|213985826|gb|ACJ56125.1| Protein tex [Acinetobacter baumannii AB307-0294]
          Length = 782

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 578 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 632

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 633 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 691

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 692 VQVRVMQVDVERNRVNLSMRA 712


>gi|168183609|ref|ZP_02618273.1| putative general stress protein [Clostridium botulinum Bf]
 gi|187777489|ref|ZP_02993962.1| hypothetical protein CLOSPO_01057 [Clostridium sporogenes ATCC
           15579]
 gi|237796990|ref|YP_002864542.1| hypothetical protein CLJ_B3859 [Clostridium botulinum Ba4 str. 657]
 gi|182673239|gb|EDT85200.1| putative general stress protein [Clostridium botulinum Bf]
 gi|187774417|gb|EDU38219.1| hypothetical protein CLOSPO_01057 [Clostridium sporogenes ATCC
           15579]
 gi|229260921|gb|ACQ51954.1| putative RNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 134

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV + +FGAFV   G + GLVHIS++S   V    + +KE D V VK++  DD+G
Sbjct: 8   ILEGTVVNITNFGAFVEIEG-KTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKG 66

Query: 682 KIKLSMKVVDQN 693
           KI LS+K   Q 
Sbjct: 67  KISLSIKQAMQQ 78


>gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
          Length = 382

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFADYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKETLEE 348



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMNSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|160947387|ref|ZP_02094554.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270]
 gi|158446521|gb|EDP23516.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270]
          Length = 674

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +NID+     + S    E +  +E +        V  + +G V K+ DFGAFV+  G  D
Sbjct: 437 INIDERKKKIVLSRREVEEKELQEKLDLAWSKLAVGDVLRGTVRKLTDFGAFVNL-GDVD 495

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GL+H+S +S  R+ K SD++  GD V V +L  + +R +I L +K + +  
Sbjct: 496 GLIHVSDISWNRIKKPSDILSVGDEVEVIILKLNRERNRISLGLKQLTKKP 546



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++      +   V  +  G V+ ++DFGAFV      +GLVHISQ+S + + K SDV+  
Sbjct: 544 KKPFELFLENNSVGDVVTGTVINLVDFGAFVKLKENVEGLVHISQISHDHIEKASDVLNI 603

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVV 690
           G+ V VK+++ D+   KI LS+K +
Sbjct: 604 GEEVQVKIINIDEENQKISLSIKEL 628



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +   E I           + KG ++ V +    V+     DG++ + +LS++   K  
Sbjct: 280 SKDEFMEQIEGSIKKIYPRDVVKGTIIYVTETEVMVNIGYRSDGIIKLDELSSDVTKKPK 339

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           D+  EG  + V ++  DD  G + LS + V+
Sbjct: 340 DLFHEGQEIDVYVIKLDDGEGNVVLSTRRVE 370


>gi|262380461|ref|ZP_06073615.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262297907|gb|EEY85822.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 790

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 18/139 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           ++++IG        I+ Q      IDD   +      LAE+E      R   R+     +
Sbjct: 583 VKDIIGNS-----EIIRQVDPNQFIDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDD 637

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +  +         +G V  V +FGAFV     +DGLVHIS+L+ E V+    +VK G  V
Sbjct: 638 ITDVKQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIV 697

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V+++  D +R ++ LSM+
Sbjct: 698 QVRVIQVDAERNRVNLSMR 716


>gi|255320246|ref|ZP_05361431.1| transcriptional accessory protein [Acinetobacter radioresistens
           SK82]
 gi|255302685|gb|EET81917.1| transcriptional accessory protein [Acinetobacter radioresistens
           SK82]
          Length = 785

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 18/139 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           ++++IG        I+ Q      IDD   +      LAE+E      R   R+     +
Sbjct: 578 VKDIIGNS-----EIIRQVDPNQFIDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDD 632

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +  +         +G V  V +FGAFV     +DGLVHIS+L+ E V+    +VK G  V
Sbjct: 633 ITDVKQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIV 692

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V+++  D +R ++ LSM+
Sbjct: 693 QVRVIQVDAERNRVNLSMR 711


>gi|168213729|ref|ZP_02639354.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|170714808|gb|EDT26990.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 720

 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
          Length = 235

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 17/210 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    R+ R     V+        ++ +V +I    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQIVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             + +AL+DAGVP+     G+   L  DG    ++ D +  ++         A  DS   
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDSDG---TLVLDPTAKQEKEARAVLTFA-LDSVDR 190

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHI 531
            + M    G  S+  +   L  A+    H+
Sbjct: 191 KLLMSTTKGLYSDAELQQCLAAAQTASQHV 220



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 64/196 (32%), Gaps = 20/196 (10%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    RMI  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 88  GVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQIVSDAGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDED-QGSLDLFVSG-TQDAVLMVELEANQLSEDVVL 201
                 G       +G  VL+P   ++ +    L  +  + D  L++       S+  + 
Sbjct: 148 MRALFCGVTCALDSDGTLVLDPTAKQEKEARAVLTFALDSVDRKLLMSTTKGLYSDAELQ 207

Query: 202 DAIIFGHNECKPVIEA 217
             +       + V   
Sbjct: 208 QCLAAAQTASQHVFRF 223


>gi|148594030|emb|CAL63584.1| ribosomal protein S1 [Sinorhizobium medicae]
 gi|148594058|emb|CAL63598.1| ribosomal protein S1 [Sinorhizobium medicae]
 gi|148594076|emb|CAL63607.1| ribosomal protein S1 [Sinorhizobium medicae]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGRDA 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|145595655|ref|YP_001159952.1| 30S ribosomal protein S1 [Salinispora tropica CNB-440]
 gi|145304992|gb|ABP55574.1| SSU ribosomal protein S1P [Salinispora tropica CNB-440]
          Length = 493

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 285 DPWRQFARTHAIQQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVG 344

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             V VK++D D +R +I LS+K  ++
Sbjct: 345 SEVMVKVIDIDLERRRISLSLKQANE 370



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  +  +R+   +  +  ++ KG V  +++FGAFV 
Sbjct: 171 ELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVD 230

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 231 L-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWR 288



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           +  KV +DD G+            AA +      +      I +G VVKV      +   
Sbjct: 10  SATKVTVDDLGS-------EEAFLAAIDETIKYFND---GDIVEGTVVKVDRDEVLLDIG 59

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +     ++VV  GD +   +L   D  G++ LS K   
Sbjct: 60  YKTEGVIPSRELSIKHDVDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQ 111


>gi|39977801|ref|XP_370288.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
 gi|145013689|gb|EDJ98330.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
          Length = 280

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 20/242 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE--QYVDSLSGT- 369
           R+DGR    +R   AQ+       GSS    G T+ + VVT G  E    Q    ++ T 
Sbjct: 14  RVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVT-GPSEAAPGQRRTGVNITA 72

Query: 370 -----------QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
                      +  + ++       ++ +  + G   +R          A+   L     
Sbjct: 73  TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFI 474
              T+     +   DGS   A +  ++LA +DAG+P++  V   + G         +   
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESAD 192

Query: 475 ILSDISGDEDHLG-HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            L D++  E+     +     G    +  +  + ++       M+       +    IL+
Sbjct: 193 PLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGCKQVREILD 252

Query: 534 EM 535
            +
Sbjct: 253 RV 254



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 30/229 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV-----------NYQERTYAVGKIPG 75
           +DG+     G T V+  V        GQ    + +             +E    V  +  
Sbjct: 36  ADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITATATGGGQGAQSKEAEVVVSIVVA 95

Query: 76  GY----LRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVV 129
           G+     ++  R  +    +   +  ++           + +   ++V+  D   S    
Sbjct: 96  GFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQHSTITFSLHVLSQDG--SLLAA 153

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVD----YINGQYVLNPRLD---EDQGSLD-LFVS-- 179
            + AA+ A + +G+P    VV         Y       +P LD   +++  L  L  +  
Sbjct: 154 LINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESADPLLDLNQQEETELPGLTAATL 213

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           G  D V+++  E+  +    +   +    + CK V E + ++ K   ++
Sbjct: 214 GATDRVVVLSCESR-VQASRLEGMLAVAVDGCKQVREILDRVVKERGRQ 261


>gi|239830871|ref|ZP_04679200.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301]
 gi|239823138|gb|EEQ94706.1| ribosomal protein S1 [Ochrobactrum intermedium LMG 3301]
          Length = 576

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 101 SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 159

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 160 VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 219

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 220 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 278

Query: 691 DQNTG 695
           + +  
Sbjct: 279 ENDPW 283



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 213 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ ++    +G   P  + +      I +      I  G + +  +
Sbjct: 263 RINQETHRISLGMKQLENDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 322

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 323 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 382

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 383 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 442

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 443 ERISLGIKQL 452



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 281 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 340

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 341 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 370



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       +  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 471 VVTCEVTAVTDGGLEVRLVDHDLESFIKRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 530

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 531 TRKLQVSIKALEIAEEKEAV 550


>gi|168704591|ref|ZP_02736868.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246]
          Length = 618

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
            +G+V K+ +FG FV      +GL+HIS+L+  +V    +VVK GD V VK+L  D +  
Sbjct: 476 VRGKVTKLTNFGVFVQLEEGLEGLLHISELTDAKVESPEEVVKVGDEVDVKVLRVDAKDR 535

Query: 682 KIKLSMKVVDQNT 694
           KI LSMK VD NT
Sbjct: 536 KIGLSMKNVDDNT 548



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE-------MIRSITDVPEVNKIYKGQV 627
              V      V ID    V I      + + A           ++I     +N  + G+V
Sbjct: 246 WHRVTNPRDVVQIDQTLEVYILHIDREKEKIALSLKHKTPSPWQNIEAKYPINSRHTGEV 305

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V +M +GAFV      +GLVHIS++S  +R+A   ++V+ GD V V++L+ + D+ +I L
Sbjct: 306 VNIMPYGAFVKLEPGIEGLVHISEMSWIKRIADPKEIVQIGDKVEVQVLNINHDKKEISL 365

Query: 686 SMKVVDQNTGKPIV 699
            MK    N    + 
Sbjct: 366 GMKQCQSNPWGEVA 379



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 575 RGIVEQTGAKVN-----IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           + I E     +      ID+     + S      +  +     +    EV +I  G V  
Sbjct: 163 QSIDEYIERTIECVILKIDEQRRNIVVSRRKLIEDRRKIQKDKLLGELEVGQIRTGVVKN 222

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + +FGAFV   G  DGL+HI+ +   RV    DVV+   T+ V +L  D ++ KI LS+K
Sbjct: 223 IAEFGAFVDL-GGIDGLLHITDMGWHRVTNPRDVVQIDQTLEVYILHIDREKEKIALSLK 281

Query: 689 VVDQNTGKPI 698
               +  + I
Sbjct: 282 HKTPSPWQNI 291



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 92/262 (35%), Gaps = 34/262 (12%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           V  I  G+VK+  +F    D+ G +   H+  M +        +  +          +  
Sbjct: 212 VGQIRTGVVKNIAEFGAFVDLGGIDGLLHITDMGWHRVTNPRDVVQI----------DQT 261

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP-----RVEIMAIPPDQIRNVIGMGG 571
           + + +    R +  I   +          +    P       E++ I P      +  G 
Sbjct: 262 LEVYILHIDREKEKIALSLKHKTPSPWQNIEAKYPINSRHTGEVVNIMPYGAFVKLEPGI 321

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDV 616
           + +  I E +  K   D    V+I      ++                        +   
Sbjct: 322 EGLVHISEMSWIKRIADPKEIVQIGDKVEVQVLNINHDKKEISLGMKQCQSNPWGEVAKK 381

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
                +  G V  + ++GAF+      DGL+H+S +S   +V+  S+VV++G  +   +L
Sbjct: 382 YPTGTVITGVVRNLTNYGAFIEIEEGIDGLLHVSDMSYVRKVSNPSEVVQKGQKLTCVVL 441

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
             D +R ++ L +K +  +  +
Sbjct: 442 SVDQERKRVALGLKQMGNDPWE 463


>gi|148594034|emb|CAL63586.1| ribosomal protein S1 [Sinorhizobium saheli]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGRDA 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|47565960|ref|ZP_00236998.1| ribosomal protein S1 [Bacillus cereus G9241]
 gi|47556877|gb|EAL15207.1| ribosomal protein S1 [Bacillus cereus G9241]
          Length = 382

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+    + +K++  ++   + LS + VD  
Sbjct: 61  VVELDQILELKVIKLEEDDLV-LSKRAVDAE 90


>gi|295111344|emb|CBL28094.1| Ribosomal protein S1 [Synergistetes bacterium SGP1]
          Length = 516

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQ 626
           G G  +   I E    K    D    ++  S    +       R+          + +G+
Sbjct: 164 GRGSNLSSFIDETFEVKPLERDKRKHRLVFSRKDLVAKENAEKRAKFYDEVHEGDVLEGE 223

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  + DFG FV+  GA DGLVH+S+++ +R  +  D+ K+GD V VK++  D ++ +I L
Sbjct: 224 VSSITDFGIFVNLKGAMDGLVHVSEITWKRNVRIRDLYKKGDKVTVKVIGLDKEKDRISL 283

Query: 686 SMKVVDQNTG 695
           S+K V  +  
Sbjct: 284 SIKQVQGDPW 293



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +      + KG V  V DFGAFV      +GL+HI  +S  R+    D  ++G
Sbjct: 291 DPWLTAGERIHKGDVMKGVVTNVTDFGAFVELEPGIEGLIHIGDISWARIKHPRDTFRKG 350

Query: 668 DTVWVKLLDF----DDRG-KIKLSMKVVDQNTGKPI 698
             V V ++D     D +  +I L  K ++ +  K I
Sbjct: 351 QEVEVLVMDIALSEDPKKCRISLGYKQLN-DPWKDI 385



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + I     V +  K +VV++ +FGAFV      + L+HISQLS  RV K  DV+ EG
Sbjct: 380 DPWKDIDKRYAVGQDLKVKVVRLAEFGAFVEAEEGVEALIHISQLSNRRVEKPGDVLHEG 439

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V  ++++ + ++ +++LS+  +++ T
Sbjct: 440 QEVVARMIEVNPEQRRMRLSLSALEEPT 467


>gi|148594040|emb|CAL63589.1| ribosomal protein S1 [Sinorhizobium meliloti]
 gi|148594042|emb|CAL63590.1| ribosomal protein S1 [Sinorhizobium meliloti]
 gi|148594070|emb|CAL63604.1| ribosomal protein S1 [Sinorhizobium meliloti]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGRDA 322



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|300856020|ref|YP_003781004.1| putative 30S ribosomal protein S1 [Clostridium ljungdahlii DSM
           13528]
 gi|300436135|gb|ADK15902.1| predicted 30S ribosomal protein S1 [Clostridium ljungdahlii DSM
           13528]
          Length = 392

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +    ++ +   VN I +G V K+++ GAFV      +GLVHIS++S E +AK SDV+K 
Sbjct: 273 KNPWDNMDEKYNVNDIIEGTVSKIINIGAFVEIEPGVEGLVHISEISEEHIAKPSDVLKV 332

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKV 689
           GD V VK+LD + +  +I LS+K 
Sbjct: 333 GDRVKVKILDINTKDSRISLSIKD 356



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V ++  FGAF+   G  +GL HIS+LS  R+   S+VV  GD V V +L+ D D+ 
Sbjct: 204 VKGVVSRLTGFGAFIDL-GGVEGLAHISELSWRRIKNPSEVVSVGDCVEVYVLNADKDKN 262

Query: 682 KIKLSMKVVDQNTG 695
           +I LS+K   +N  
Sbjct: 263 RISLSLKDTKKNPW 276



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            + L  +    + I S        ++ KG+V+ V D  A V+     DG++  S+L  + 
Sbjct: 4   DNELNSMNEVMDQIDSSMKNVRSGEVVKGKVISVTDEQAMVNIGYIVDGVLPKSELCKDE 63

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLS-MKVVDQ 692
                +V+K GD ++V ++   D+ G + LS +K   +
Sbjct: 64  NVNVDEVLKVGDEIYVYVIKTNDEDGNVLLSKIKADRE 101


>gi|253751564|ref|YP_003024705.1| 30S ribosomal protein S1 [Streptococcus suis SC84]
 gi|253753465|ref|YP_003026606.1| 30S ribosomal protein S1 [Streptococcus suis P1/7]
 gi|251815853|emb|CAZ51463.1| putative 30S ribosomal protein S1 [Streptococcus suis SC84]
 gi|251819711|emb|CAR45541.1| putative 30S ribosomal protein S1 [Streptococcus suis P1/7]
 gi|292558214|gb|ADE31215.1| ribosomal protein S1 [Streptococcus suis GZ1]
 gi|319757998|gb|ADV69940.1| putative 30S ribosomal protein S1 [Streptococcus suis JS14]
          Length = 401

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   KV   D+   +++ S  A           +        + +G+V ++ DFGAFV 
Sbjct: 241 EEVEVKVLAIDEVEGRVSLSLKATQP---GPWDGVEQKLVAGDVIEGKVKRLTDFGAFVE 297

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                DGLVHISQ+S +RV    D +  G  V VK+L+ +    ++ LS+K +++   
Sbjct: 298 VLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAADERVSLSIKALEERPA 355



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       AA      +     V ++  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPAENRFILSRRDVVEAAAAAARAEVFGKLAVGEVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|158320593|ref|YP_001513100.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140792|gb|ABW19104.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 378

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
            T   + ID      + S  +   E  +     +    +      G+V ++ DFGAFV  
Sbjct: 156 FTTKVMEIDRKRNKAVLSRKVVLAEENKHKKVELFSKLDKGMQISGEVKRITDFGAFVDI 215

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G  DGLVHIS LS  RV   S+VV  GD V V +LDFD D+GK+ L +K   +     +
Sbjct: 216 -GGIDGLVHISDLSWGRVKHPSEVVTIGDIVKVVVLDFDKDKGKVSLGLKQTQKQPWDDV 274



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++    +     +  I +G+VV+++DFGAFV      DGLVHISQ+S + +AK S+ + 
Sbjct: 267 QKQPWDDVELKYPIGSIVEGKVVRLVDFGAFVELEVGLDGLVHISQISEKHIAKPSEELH 326

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            G  V VK+LD   +  +I LS+   D+  
Sbjct: 327 IGQKVKVKVLDVKPEEKRISLSITAADEKE 356



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +++   E I          +I  G+V+ V +   FV+     DG++   ++S +   
Sbjct: 1   MSNDMQNLMEEIEKSMVRLRRGEIVSGKVINVTNNEIFVNVGYKSDGIIPKDEISNDITV 60

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           + S++VKEGD + V +L  DD  G + LS K VD
Sbjct: 61  QPSELVKEGDEIKVYVLSLDDGDGNVLLSKKRVD 94


>gi|121999024|ref|YP_001003811.1| RNA-binding S1 domain-containing protein [Halorhodospira halophila
           SL1]
 gi|121590429|gb|ABM63009.1| RNA binding S1 domain protein [Halorhodospira halophila SL1]
          Length = 798

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA           E   + +G V  V +FGAFV     +DG
Sbjct: 629 DILGELAKPGRDPRPEFRTAAFREGVEKIQDLEPGMVLEGTVTNVANFGAFVDIGVHQDG 688

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS L+ E V    D V+ GD V VK+++ D +R +I LSM++ D    +
Sbjct: 689 LVHISALAHEFVRDPRDKVRTGDVVQVKVMEVDLERQRIGLSMRLDDDPNAQ 740


>gi|330965662|gb|EGH65922.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 773

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGKPI 698
           M++ D   G+ I
Sbjct: 717 MRMSD-TPGEKI 727


>gi|319944389|ref|ZP_08018663.1| YhgF like protein [Lautropia mirabilis ATCC 51599]
 gi|319742350|gb|EFV94763.1| YhgF like protein [Lautropia mirabilis ATCC 51599]
          Length = 790

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +      +        +G V  V +FGAFV     +DG
Sbjct: 626 DILKELEKPGRDPRPEFRTAAFKEGVDKLEDLRPGMTLEGVVTNVANFGAFVDIGVHQDG 685

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVHIS LS   V    +VVK GD V VK+L+ D  R ++ L+M++ D+   +
Sbjct: 686 LVHISALSDRFVKDPHEVVKTGDVVKVKVLEVDVRRQRVALTMRMSDEPGAE 737


>gi|148594036|emb|CAL63587.1| ribosomal protein S1 [Sinorhizobium arboris]
 gi|148594056|emb|CAL63597.1| ribosomal protein S1 [Sinorhizobium arboris LMG 14919]
 gi|148594072|emb|CAL63605.1| ribosomal protein S1 [Sinorhizobium arboris]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGRDA 322



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|148594048|emb|CAL63593.1| ribosomal protein S1 [Sinorhizobium terangae]
 gi|148594050|emb|CAL63594.1| ribosomal protein S1 [Sinorhizobium terangae]
 gi|148594054|emb|CAL63596.1| ribosomal protein S1 [Sinorhizobium terangae]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVRAVVLDVDVEK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + +++
Sbjct: 309 ERISLGIKQLGKDS 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|148594020|emb|CAL63579.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGKDA 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|148594012|emb|CAL63575.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594014|emb|CAL63576.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594018|emb|CAL63578.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVEK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGKDA 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|148594022|emb|CAL63580.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594024|emb|CAL63581.1| ribosomal protein S1 [Ensifer adhaerens]
 gi|148594026|emb|CAL63582.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVRAVVLDVDVEK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + +++
Sbjct: 309 ERISLGIKQLGKDS 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|148594064|emb|CAL63601.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGKDA 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|225374882|ref|ZP_03752103.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM
           16841]
 gi|225213265|gb|EEG95619.1| hypothetical protein ROSEINA2194_00505 [Roseburia inulinivorans DSM
           16841]
          Length = 365

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
            + I  +  +   + R  I +    ++ +   Q  E   ++++  +    ++NV   G  
Sbjct: 151 DQEIQFVISEFNPKRRRIIGDRKQLLVEKKLEQQKELFAKIKVGDVMEGTVKNVTDFGAF 210

Query: 573 V-------IRGIVEQTG---------------AKVNIDDDGTVKIASSSLAEIEAAREMI 610
           +       +  I E +                 KV I D    KIA S       +    
Sbjct: 211 IDLGGADGLLHISEMSWGRVESPKKVFNVGDTVKVFIKDINDTKIALSMK---FPSENPW 267

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
               +   V  I KG+V ++ DFGAFV      D L+H+SQ+S + V K +DV+K G  +
Sbjct: 268 NGAAEKFAVGNIVKGKVARMTDFGAFVELAPGVDALLHVSQISKDHVEKPADVLKIGQEI 327

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
             K++DF+ D  KI LS+K ++
Sbjct: 328 EAKVVDFNEDDKKISLSIKALE 349



 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +     +   +   L     +   F P      +     +++     + I+ 
Sbjct: 100 LEEAFENKEVLTAKVSQVLDGGLCVVVDETRVFIPASL---VSDSYEKDLSKYKDQEIQF 156

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           ++ +   K          I       +E   E  + +    +V  + +G V  V DFGAF
Sbjct: 157 VISEFNPKR------RRIIGDRKQLLVEKKLEQQKELFAKIKVGDVMEGTVKNVTDFGAF 210

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +   GA DGL+HIS++S  RV     V   GDTV V + D +D  KI LSMK   +N  
Sbjct: 211 IDLGGA-DGLLHISEMSWGRVESPKKVFNVGDTVKVFIKDINDT-KIALSMKFPSENPW 267



 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  ++ + E  A  + +V  G
Sbjct: 8   QMLEESFKTIRNGEVVEGTVIDVKPDEIVLNIGYKSDGIITRNEYTNESNADLTTMVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +    G
Sbjct: 68  DTMEAKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|220926381|ref|YP_002501683.1| 30S ribosomal protein S1 [Methylobacterium nodulans ORS 2060]
 gi|219950988|gb|ACL61380.1| ribosomal protein S1 [Methylobacterium nodulans ORS 2060]
          Length = 569

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +R    I N++    +        F PR ++   P   +  ++G        
Sbjct: 108 LEKAFENNERVTGTIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPLMGTPQPFQIL 167

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +++          G + ++  ++ E   A +    + ++ E  ++  G V  + ++GAF
Sbjct: 168 KMDRRR--------GNIVVSRRTVLEESRAEQRSELVANLEEG-QVIDGVVKNITEYGAF 218

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+H++ ++  RV   S+VV  G TV VK++  + +  +I L +K +  +  
Sbjct: 219 VDL-GGIDGLLHVTDMAWRRVNHPSEVVNIGQTVKVKIIKINHETHRISLGIKQLLADPW 277

Query: 696 KPIV 699
           + I 
Sbjct: 278 EGIA 281



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     VN   KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 275 DPWEGIAARYPVNAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 335 SQEVEVQILEVDPVKRRISLGLKQTLQNPWE 365



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S +  +   +K+  I          
Sbjct: 207 GVVKNITEYGAFVDLGGIDGLLHVTDMAWRRVNHPSEVVNIGQTVKVKII---------- 256

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +       I   + ++L++    +    P    +      I +      +  G + +  +
Sbjct: 257 KINHETHRISLGIKQLLADPWEGIAARYPVNAKLKGRVTNITDYGAFVELEPGIEGLIHV 316

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKI 622
            E +  K N+     V  +     +I                  +    +  +   V   
Sbjct: 317 SEMSWTKKNVHPGKIVSTSQEVEVQILEVDPVKRRISLGLKQTLQNPWEAFAEKHPVGSE 376

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  D  K+GD V  ++LD D ++
Sbjct: 377 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDEFKKGDVVRAQVLDVDVEK 436

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K +  + 
Sbjct: 437 ERISLGIKQLAGDP 450



 Score = 40.7 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++   +V++V D G  V          +  ++++ +R  +  +    G+ V  ++  FD 
Sbjct: 461 QVVTCEVLEVKDSGIEVKIVDTDLTTFIRRAEIARDRGDQRPERFAPGEKVDARVTQFDR 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  +++LS+K ++    K  +
Sbjct: 521 KARRVQLSIKALEMAEEKEAI 541


>gi|195124361|ref|XP_002006662.1| GI21186 [Drosophila mojavensis]
 gi|193911730|gb|EDW10597.1| GI21186 [Drosophila mojavensis]
          Length = 1260

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWV 672
           PEV KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV    TV V
Sbjct: 298 PEVGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVARNQTVKV 357

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K++    + K+ LSMK VDQ TG+ +
Sbjct: 358 KVMSLAGQ-KVSLSMKEVDQETGRDL 382


>gi|148594032|emb|CAL63585.1| ribosomal protein S1 [Ensifer adhaerens]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGKDA 322



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|148594052|emb|CAL63595.1| ribosomal protein S1 [Sinorhizobium saheli]
 gi|148594074|emb|CAL63606.1| ribosomal protein S1 [Sinorhizobium saheli]
          Length = 403

 Score = 91.1 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 46  GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 103

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 104 DMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 149



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 79  GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 128

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 129 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 188

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 189 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 248

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 249 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVRAVVLDVDVDK 308

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 309 ERISLGIKQLGRDA 322



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 147 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 206

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 207 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 237


>gi|291458642|ref|ZP_06598032.1| S1 RNA binding domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419175|gb|EFE92894.1| S1 RNA binding domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 723

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 47/376 (12%)

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYV-DSLSGTQRNDFMMHYNFLPCATGEVSRMGA-- 393
           G SL   G+  A       +RE EQ + D +  ++     +  N    +    SR+GA  
Sbjct: 371 GVSLISLGNGTA-------SRESEQIIADFIRESRLPLRYVIVNEAGASVYSASRLGAEE 423

Query: 394 -----PSRREIGHGRLARRAIHPVLPQTAQFPYTLRI-----------VSEITESDGSSS 437
                P +R      +ARR   P+       P ++ +           +SE   +     
Sbjct: 424 FPDFDPGQRSAVS--MARRLQDPLSELVKIDPQSIGVGQYQHDLNQGKLSEKLRA---IV 478

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
              V    + L  A VP+   V+GI+  L K+   +   S  S  E     +  ++    
Sbjct: 479 EDCVNSVGVDLNTASVPLLSAVSGISRSLAKNIVSYRE-SHGSFAERRELLLVPRLGPRA 537

Query: 498 SGIT--AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
                  +++      + E+ +      A R  L +L    + +   R    E    +  
Sbjct: 538 YEQCAGFLRITGGKEPLDESAVHPESYDAARKLLSLLGLCEEDIRNGRT--RELESLLSE 595

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
             I   ++ +  G+G   +  ++ +      ++  G    AS     +   R  +  ++D
Sbjct: 596 RGIRKKELMDATGLGEYSLSDVLRE------LEKPGRDPRASRPAPLL---RSDVLKLSD 646

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + E   I +G V  + DFGAF+     +DGLVHIS+L+   V   S++++ G    V++L
Sbjct: 647 LKEG-MILEGVVRNITDFGAFLDIGVHQDGLVHISELAERYVKHPSELLRLGQVKRVRIL 705

Query: 676 DFDD-RGKIKLSMKVV 690
             D+ RG+I LSMK +
Sbjct: 706 SVDEKRGRISLSMKKI 721


>gi|251793287|ref|YP_003008015.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
 gi|247534682|gb|ACS97928.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
          Length = 771

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 20/164 (12%)

Query: 547 GEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
            E  P VE +       I++++G  G     +V Q  AK   D+   +        E+E 
Sbjct: 570 PEAYPVVEKILQATEQSIQDLMGNAG-----LVRQLDAKQFTDEQFGLPTVQDIFKELEK 624

Query: 606 AREMIR------------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                R                  +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 625 PGRDPRGEFKTATFAEGVEEITDLKAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            + V     VVK GD V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 685 DKFVEDPHQVVKTGDVVKVKVLEVDVARRRIALTMR-LDESAVK 727


>gi|315503018|ref|YP_004081905.1| tex-like protein protein-like protein [Micromonospora sp. L5]
 gi|315409637|gb|ADU07754.1| Tex-like protein protein-like protein [Micromonospora sp. L5]
          Length = 827

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 19/149 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++   G+ +R ++ ++       A   +DD   +   +  LAE+E      R   R+
Sbjct: 592 VRRILSSTGQDLRALIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGRDPRPEFRT 651

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T V  V KI         +G V  V  FGAFV     +DGLVH+S +S   V    DVV
Sbjct: 652 ATFVEGVEKISDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHTFVKDPRDVV 711

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           K GD V V++LD D  R +I L++++ D+
Sbjct: 712 KSGDVVKVRVLDVDVPRKRISLTLRLDDE 740


>gi|311028994|ref|ZP_07707084.1| hypothetical protein Bm3-1_00278 [Bacillus sp. m3-13]
 gi|311032284|ref|ZP_07710374.1| hypothetical protein Bm3-1_17387 [Bacillus sp. m3-13]
          Length = 154

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 46/80 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGTTGLVHISEVADNYVKDINDHLKVGDEVQVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           +  GKI LS+K       +P
Sbjct: 64  EKDGKIGLSIKKASDTYREP 83


>gi|157695034|gb|ABV66106.1| 30S ribosomal protein S1 [Rickettsiella melolonthae]
          Length = 298

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +    I    +     + +D      + S         +     +    E 
Sbjct: 9   PGSLVDVRPVRDSSIIEGKDLEFKVIKLDPKRNNIVLSRRAILESEGQAGREQLLTELEE 68

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++ KG V  + D+GAF+   G  DGL+H++ +S +RV + S+V+  GD + V +L  + 
Sbjct: 69  GQVIKGIVKNLADYGAFIDL-GGIDGLLHVTDISWKRVKQPSEVLTIGDEIEVVVLKIER 127

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           DRG++ L +K +  +  + +V
Sbjct: 128 DRGRVSLGLKQLVGDPWEDLV 148



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
            I   +E    K+   D G V +    L       +    +     V    KG+V  V D
Sbjct: 113 TIGDEIEVVVLKIE-RDRGRVSLGLKQLVG-----DPWEDLVKRYPVGTRLKGKVTNVTD 166

Query: 633 FGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +G FV      +GLVH+S++    +    + +V+ G  + V +LD D DR +I L +K  
Sbjct: 167 YGCFVEIEEGVEGLVHVSEMDWTNKNINPNKIVQAGMEIEVVVLDIDSDRRRISLGIKQC 226

Query: 691 DQNTGKP 697
             N  + 
Sbjct: 227 KSNPWED 233



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P++I       G  I  +V      ++ID D           +            +  
Sbjct: 193 INPNKIVQ----AGMEIEVVV------LDIDSDRRRISLGIKQCKSN----PWEDFANTH 238

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
              +   G++  + DFG F+   G  DGLVH+S ++   ++    V   K+GD +   +L
Sbjct: 239 AKGERITGKIKSITDFGLFIGLPGNIDGLVHLSDIAWN-ISGEEAVRKYKKGDELETIIL 297

Query: 676 D 676
            
Sbjct: 298 S 298


>gi|170744131|ref|YP_001772786.1| 30S ribosomal protein S1 [Methylobacterium sp. 4-46]
 gi|168198405|gb|ACA20352.1| ribosomal protein S1 [Methylobacterium sp. 4-46]
          Length = 569

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +R    I N++    +        F PR ++   P   +  ++G        
Sbjct: 108 LEKAFENNERVTGTIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPLMGTPQPFQIL 167

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +++          G + ++  ++ E   A +    + ++ E  ++  G V  + ++GAF
Sbjct: 168 KMDRRR--------GNIVVSRRTVLEESRAEQRSELVANLEEG-QVIDGVVKNITEYGAF 218

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+H++ ++  RV   S+VV  G TV VK++  + +  +I L +K +  +  
Sbjct: 219 VDL-GGIDGLLHVTDMAWRRVNHPSEVVNIGQTVKVKIIKINHETHRISLGIKQLLADPW 277

Query: 696 KPIV 699
           + I 
Sbjct: 278 EGIA 281



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     VN   KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 275 DPWEGIAARYPVNAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 335 SQEVEVQILEVDPVKRRISLGLKQTLQNPWE 365



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S +  +   +K+  I          
Sbjct: 207 GVVKNITEYGAFVDLGGIDGLLHVTDMAWRRVNHPSEVVNIGQTVKVKII---------- 256

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +       I   + ++L++    +    P    +      I +      +  G + +  +
Sbjct: 257 KINHETHRISLGIKQLLADPWEGIAARYPVNAKLKGRVTNITDYGAFVELEPGIEGLIHV 316

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKI 622
            E +  K N+     V  +     +I                  +    +  +   V   
Sbjct: 317 SEMSWTKKNVHPGKIVSTSQEVEVQILEVDPVKRRISLGLKQTLQNPWEAFAEKHPVGSE 376

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  D  K+GD V  ++LD D ++
Sbjct: 377 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDEFKKGDVVRAQVLDVDVEK 436

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K +  + 
Sbjct: 437 ERISLGIKQLAGDP 450



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++   +V++V D G  V          +  ++++ +R  +  +    G+ V  ++  FD 
Sbjct: 461 QVVTCEVLEVKDSGIEVKIVDTDLSTFIRRAEIARDRGDQRPERFAAGEKVDARVTQFDR 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  +++LS+K ++    K  +
Sbjct: 521 KARRVQLSIKALEMAEEKEAI 541


>gi|153810051|ref|ZP_01962719.1| hypothetical protein RUMOBE_00432 [Ruminococcus obeum ATCC 29174]
 gi|149834229|gb|EDM89309.1| hypothetical protein RUMOBE_00432 [Ruminococcus obeum ATCC 29174]
          Length = 723

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   +G+G   +R IV++             K A     E+               + 
Sbjct: 602 KKLAEELGVGEPTLRDIVKELE-----------KPARDPRDEMPKPVLRTDVLDMKDLKE 650

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I KG V  V+DFGAFV     +DGLVHIS+++   +    + V  GD V V+++  D 
Sbjct: 651 GMILKGTVRNVIDFGAFVDIGVHQDGLVHISEMTERYIKHPLEAVSVGDVVDVRVIGVDL 710

Query: 679 DRGKIKLSMKVV 690
            + +I LSMK +
Sbjct: 711 KKKRISLSMKGI 722


>gi|223934222|ref|ZP_03626156.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|223897103|gb|EEF63530.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
          Length = 191

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   KV   D+   +++ S  A           +        + +G+V ++ DFGAFV 
Sbjct: 31  EEVEVKVLAIDEVEGRVSLSLKATQP---GPWDGVEQKLAAGDVIEGKVKRLTDFGAFVE 87

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                DGLVHISQ+S +RV    D +  G  V VK+L+ +    ++ LS+K +++   
Sbjct: 88  VLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAADERVSLSIKALEERPA 145



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            G  DGLVH+++LS ER       V  G+ V VK+L  D+  G++ LS+K       
Sbjct: 3   LGGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQPGPW 59


>gi|302875853|ref|YP_003844486.1| Tex-like protein-like [Clostridium cellulovorans 743B]
 gi|307689286|ref|ZP_07631732.1| Tex-like protein-like [Clostridium cellulovorans 743B]
 gi|302578710|gb|ADL52722.1| Tex-like protein-like [Clostridium cellulovorans 743B]
          Length = 719

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEV 619
           +++   +G+G   +  I+++             K       ++         I     + 
Sbjct: 598 EKLSEGLGIGVPTLLDIIKELK-----------KPGRDPREDMPKPILKSGVIELSDLKP 646

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             + KG V  V DFGAFV     +DGLVH S++    V    DVVK GD + VK+L+ D+
Sbjct: 647 GMVLKGTVRNVADFGAFVDIGVHQDGLVHKSEMRNSFVKHPLDVVKVGDIIDVKILEVDE 706

Query: 680 -RGKIKLSMK 688
            R +I LSMK
Sbjct: 707 KRRRIALSMK 716


>gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis]
 gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis]
          Length = 616

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++              A  +   +  +      I +G V  V +FGAFV     +DG
Sbjct: 358 DIFNEIEKPGRDPRPEFTTAKFQEGINSLNDLTPGMILEGVVTNVANFGAFVDVGVHQDG 417

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVV+ G TV VK+ + D  R +I L+M++ D +  K 
Sbjct: 418 LVHISALSETFVKDPRDVVRVGQTVKVKVQEVDVARKRIGLTMRLNDDSAPKE 470


>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
          Length = 235

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+        ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
             + +AL+DAGVP+     G+   L  DG+  ++L   +  E    
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDSDGN--LVLDPTTKQEKEAR 178



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R++  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEK 175


>gi|222111189|ref|YP_002553453.1| resolvase rnase h domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221730633|gb|ACM33453.1| Resolvase RNase H domain protein [Acidovorax ebreus TPSY]
          Length = 798

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK GD V VK+L+ D  
Sbjct: 680 MVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVLEVDAA 739

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSMK +D    +
Sbjct: 740 RKRISLSMK-LDAAPAR 755


>gi|163757676|ref|ZP_02164765.1| 30S ribosomal protein S1 [Hoeflea phototrophica DFL-43]
 gi|162285178|gb|EDQ35460.1| 30S ribosomal protein S1 [Hoeflea phototrophica DFL-43]
          Length = 568

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
           +++ ++A+R    +  E      E R++   F        +  D     +      IR I
Sbjct: 89  MLSREKARREESWVRLEEKFTAQE-RVEGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPI 147

Query: 578 VEQTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVK 629
            + +         ++   D     I  S    +E +R   RS      E  +  +G V  
Sbjct: 148 RDVSPLMHIPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQTVEGMVKN 207

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + D  +I L MK
Sbjct: 208 ITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILSIGQTVKVQIIRINQDTHRISLGMK 266

Query: 689 VVDQNTG 695
            ++ +  
Sbjct: 267 QLESDPW 273



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 203 GMVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      +  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLESDPWDGIGVKYPAGKRITGTVTNITDYGAFVELEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS---------------ITDVPEVNKI 622
            E +  K N+     +  +      +       R                          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPNKRRISLGLKQTLENPWDVFAQSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEYNKGDMVKAVVLDVDVDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + +++
Sbjct: 433 ERISLGIKQLGKDS 446



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I       K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWDGIGVKYPAGKRITGTVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              V V +L+ D ++ +I L +K   +N  
Sbjct: 331 SQEVDVVVLEVDPNKRRISLGLKQTLENPW 360



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V  V D G  V      D    +  S LS +R  +  +    G TV  ++  F  
Sbjct: 461 VVSAKVTGVTDGGLEVVLVDHEDLSSFIRRSDLSRDRDEQRPERFSVGQTVDARVTSFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  K+ LS+K ++    K  V
Sbjct: 521 KDRKVGLSIKALEIAEEKEAV 541


>gi|18311150|ref|NP_563084.1| hypothetical protein CPE2168 [Clostridium perfringens str. 13]
 gi|18145833|dbj|BAB81874.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 720

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|291522293|emb|CBK80586.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [Coprococcus catus GD/7]
          Length = 637

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQVVK 629
            G VE     + + D   V I      +I  + +   +   +   +K     + +G+V +
Sbjct: 508 WGRVENPKKVLKVGDTLKVLIKDIQGEKIALSLKFPETNPWLTAADKYAVGNVVEGKVAR 567

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
           + DFGAFV      D L+H+SQ+S + V K SDV+  G T+  K++DF++   KI LSMK
Sbjct: 568 MTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSYGQTITAKVVDFNEESQKISLSMK 627

Query: 689 VVD--QNTGK 696
            +D  + T +
Sbjct: 628 ALDAKEETEE 637



 Score = 44.1 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           NI ++    ++     +     +M+ +        ++ +G V+ V +    ++     DG
Sbjct: 269 NIIEEVHTNMSEMGNEQSFE--QMLEASLKTIRTGEVVEGTVIDVKEDEIILNIGYKADG 326

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           ++  ++ S         VV  GDT+  K+L   D  G++ L+ K +    G
Sbjct: 327 IITRNEYSNTSNLDLRTVVNVGDTMQAKVLKVNDGEGQVLLTYKRLLAERG 377


>gi|298293818|ref|YP_003695757.1| ribosomal protein S1 [Starkeya novella DSM 506]
 gi|296930329|gb|ADH91138.1| ribosomal protein S1 [Starkeya novella DSM 506]
          Length = 569

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEETRAEQRHELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 231 DIAWRRVNHPTEVLNIGQTVKVKIIKINHETHRISLGMKQLLGDPWEGI 279



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     VN  +KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWEGIEAKYPVNARFKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVAT 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   QN  +
Sbjct: 334 SQEVEVAILEVDPVKRRISLGLKQTLQNPWE 364



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 96/255 (37%), Gaps = 28/255 (10%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I    +     
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLNIGQTVKVKIIK---INHETH 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L +  + +         F  RV  +      +   +  G + +  + E + 
Sbjct: 263 RISLGMKQLLGDPWEGIEAKYPVNARFKGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 320

Query: 583 AKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      I                  +    +  +        +G+V
Sbjct: 321 TKKNVHPGKIVATSQEVEVAILEVDPVKRRISLGLKQTLQNPWEAFAEKYPAGSTVEGEV 380

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L   R   +  D  K+GD +  ++LD D ++ +I L
Sbjct: 381 KNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEFKKGDVIKAQVLDVDVEKERISL 440

Query: 686 SMKVVD----QNTGK 696
            +K +     Q++G+
Sbjct: 441 GVKQLGGDPFQDSGE 455



 Score = 39.1 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I   +V+ V + G  V   G      V  S+L+ +R  +  D    G+    +++ FD +
Sbjct: 461 IVTCEVIDVKEGGVDVKIAGTDMTTFVKRSELARDRGDQRPDRFAVGEKFDARVILFDRK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  V
Sbjct: 521 ARKVQVSIKALEIAEEKEAV 540


>gi|282882561|ref|ZP_06291182.1| general stress protein 13 [Peptoniphilus lacrimalis 315-B]
 gi|300814633|ref|ZP_07094884.1| putative general stress protein 13 [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|281297703|gb|EFA90178.1| general stress protein 13 [Peptoniphilus lacrimalis 315-B]
 gi|300511252|gb|EFK38501.1| putative general stress protein 13 [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 130

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  +  FGAFV+      GLVHIS++S   V   SDV++ G  V VK+L  D
Sbjct: 5   VGDVVEGVVSNLTKFGAFVNLDSGLTGLVHISEISDTFVKDVSDVLETGQNVKVKVLSID 64

Query: 679 DRGKIKLSMKV 689
           D+GKI LS+K 
Sbjct: 65  DKGKIALSIKA 75


>gi|239637494|ref|ZP_04678468.1| S1 family RNA-binding protein [Staphylococcus warneri L37603]
 gi|239596939|gb|EEQ79462.1| S1 family RNA-binding protein [Staphylococcus warneri L37603]
 gi|330686090|gb|EGG97712.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU121]
          Length = 135

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSLGDEVEVKVLSI 63

Query: 678 DDRGKIKLSM-KVVDQNTGKP 697
            D GKI LS+ K  D+   KP
Sbjct: 64  ADDGKISLSIKKAKDRPQRKP 84


>gi|78357054|ref|YP_388503.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219459|gb|ABB38808.1| SSU ribosomal protein S1P [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 482

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 109/284 (38%), Gaps = 36/284 (12%)

Query: 436 SSMATVCGSSLALMDA---GVPISKPVAG-IAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           S  A   GS++AL +A   GVP+   V      G   +         +S  +        
Sbjct: 93  SRSAGSAGSAMALTEAFENGVPVEGKVTAQCKGGFNVEVMQRRAFCPVSQIDSRFVENPE 152

Query: 492 KVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           +  G      IT  + + +   +S  +++ A Q+  R           V+     +L  F
Sbjct: 153 EYLGQTFQFMITRCENNGRNVVVSRRVLLEAQQEESRKEYMKTLNEGDVVDVCITRLTNF 212

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD----------------GTV 593
               E            +  G + +  I E   A+V   D+                 T 
Sbjct: 213 GAFAE------------LAPGVEGLIHISELGWARVQSADEAVTQGDTLRAKVLKIESTA 260

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K    +L+  +   +   ++ D      + +G+VV+   FGAFV      +GLVHIS++S
Sbjct: 261 KGLRIALSAKQVMEDPWNTVADRLAAGTVVEGKVVRCTPFGAFVEVLPGIEGLVHISEMS 320

Query: 654 T-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              R+ K  DVV  GDTV VK+ D D  + +I LS++  + +  
Sbjct: 321 WTRRILKAEDVVIPGDTVSVKIKDIDSAKRRISLSLREAEGDPW 364



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 86/257 (33%), Gaps = 23/257 (8%)

Query: 452 GVPISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLG--------HMDFKVAGTDSGIT 501
           G  +   V  +  +   +  G     + D    +D  G         +D  V     G  
Sbjct: 31  GEKVKGSVVAMDESSVFIATGSKVDGVIDAEELKDKEGNVTCAVGDELDLYVVAITQGEV 90

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561
            +       G S   +  A +        +  +     +   +Q   F P  +I +   +
Sbjct: 91  RLSRSAGSAG-SAMALTEAFENGVPVEGKVTAQCKGGFNVEVMQRRAFCPVSQIDSRFVE 149

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
                +G   + +    E  G  V       V      L   +   E  +          
Sbjct: 150 NPEEYLGQTFQFMITRCENNGRNV-------VVSRRVLLEAQQE--ESRKEYMKTLNEGD 200

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-- 679
           +    + ++ +FGAF       +GL+HIS+L   RV    + V +GDT+  K+L  +   
Sbjct: 201 VVDVCITRLTNFGAFAELAPGVEGLIHISELGWARVQSADEAVTQGDTLRAKVLKIESTA 260

Query: 680 RG-KIKLSMKVVDQNTG 695
           +G +I LS K V ++  
Sbjct: 261 KGLRIALSAKQVMEDPW 277



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +  +V+  G  V   I +   AK  I           SL+  EA  +      +      
Sbjct: 327 KAEDVVIPGDTVSVKIKDIDSAKRRI-----------SLSLREAEGDPWDGAAEKFAPGT 375

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
              G V K   FG FV+      GL+  S++S           K GDTV + +++ +   
Sbjct: 376 EVTGTVEKCAKFGMFVNIAPGITGLLPQSRISAA-PKSGLAGCKPGDTVTLAVMEINPAE 434

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K+ L+ K   +     I
Sbjct: 435 RKVTLTTKDAARQEDAEI 452


>gi|94984781|ref|YP_604145.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
 gi|94555062|gb|ABF44976.1| RNA binding S1 [Deinococcus geothermalis DSM 11300]
          Length = 127

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V +V DFGAFV F     GLVHISQ++   V    D V+EG+TV VK+L  D+RG
Sbjct: 9   VVEGRVTRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGETVEVKVLGRDERG 68

Query: 682 KIKLSMKVVDQNTGK 696
           ++ LS+K +     +
Sbjct: 69  RLDLSIKELLDEPEE 83


>gi|23015945|ref|ZP_00055708.1| COG2183: Transcriptional accessory protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 784

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+   V    +VVK GD V VK+L+ 
Sbjct: 663 KPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVKVLEV 722

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D  R +I LSM++  Q  
Sbjct: 723 DLKRQRIALSMRMDAQPA 740


>gi|327286703|ref|XP_003228069.1| PREDICTED: nucleolar protein of 40 kDa-like [Anolis carolinensis]
          Length = 232

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           PE+  I++G+V  V D+GAF+   G ++ GLVH S +S  RV   S++V  G+ VWVKL+
Sbjct: 5   PELYDIFQGEVASVTDYGAFIKIPGTSKQGLVHKSHMSHCRVDIPSELVDVGEKVWVKLI 64

Query: 676 DF---DDRGKIKLSMKVVDQNTGKPI 698
                D++ K  LSMKVV+Q TGK +
Sbjct: 65  GKEKTDNKLKFSLSMKVVNQGTGKDL 90


>gi|163915380|gb|AAI57174.1| Unknown (protein for IMAGE:7559583) [Xenopus (Silurana) tropicalis]
          Length = 346

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKT 660
             + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  
Sbjct: 69  KEKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANV 128

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +DVV +G  V VK+L F    K  LSMK V+Q+TG+ +
Sbjct: 129 ADVVSKGQRVKVKVLSFTGC-KTSLSMKDVNQDTGEDL 165


>gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
          Length = 395

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++   K+   +    ++  S    ++  RE  +    D   V  + +G+V ++ +FGAF+
Sbjct: 155 QELELKIVELEPSENRLILSHKEIVQQEREANKKAVLDKLVVGDVVEGKVARLTNFGAFI 214

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S++S ERV K SDV+K G  V VK+L  D ++ +I LS+K        
Sbjct: 215 DL-GGVDGLVHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEKDRISLSIKQTLPQPWD 273

Query: 697 PI 698
            I
Sbjct: 274 NI 275



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +IT+      + +G V ++  FGAFV      +GLVHISQ+S + +A  ++V+  G
Sbjct: 270 QPWDNITEKVAEGDVLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPNEVLASG 329

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           + V VK+L+ + +  ++ LS+K + +     
Sbjct: 330 EKVKVKVLNVNAEEHRLALSIKALQEKPAAE 360


>gi|168215796|ref|ZP_02641421.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|182382370|gb|EDT79849.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 720

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|270290203|ref|ZP_06196429.1| S1 RNA binding domain-containing protein [Pediococcus acidilactici
           7_4]
 gi|270281740|gb|EFA27572.1| S1 RNA binding domain-containing protein [Pediococcus acidilactici
           7_4]
          Length = 153

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 44/79 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     R GLVHIS++S   V     V+K GD+V VK+L  
Sbjct: 4   EVGTKVDGKVSGITNFGAFVDLGEHRSGLVHISEVSDSFVKDIHSVLKVGDSVTVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
            D GKI LS++   +   +
Sbjct: 64  ADDGKIALSIRKAVERPAQ 82


>gi|83313360|ref|YP_423624.1| 30S ribosomal protein S1 [Magnetospirillum magneticum AMB-1]
 gi|82948201|dbj|BAE53065.1| Ribosomal protein S1 [Magnetospirillum magneticum AMB-1]
          Length = 565

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 108/274 (39%), Gaps = 31/274 (11%)

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAG-VPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           I   I E DG  ++  V      L   G VP+ +         +K GD   +       E
Sbjct: 32  ITGTIVEIDGDVAVIDV-----GLKSEGRVPLKEFATAGRAADIKAGDQVDVFV-----E 81

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            +            +G   +  +      +  ++  + +  +R    I   +    +   
Sbjct: 82  RYE---------DRNGEVVLSREKAKREEAWTLLEKSFEAQQRVTGVIFGRVKGGFTVDL 132

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
                F P  ++   P   I  ++G         ++++         G + ++  ++ E 
Sbjct: 133 SGAVAFLPGSQVDIRPVRDITPLLGTPQPFQILKMDRSR--------GNIVVSRRAVLEE 184

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A +    I ++ E  +I +G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ 
Sbjct: 185 TRAEQRSELIENLKEG-QILEGVVKNITDYGAFVDL-GGVDGLLHVTDIAWKRINHPSEA 242

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           +  G TV V+++ F+ +  +I L +K +D +  +
Sbjct: 243 LHIGQTVKVQVIRFNSETQRISLGIKQLDADPWE 276



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     VN  + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 273 DPWEGVEAKYPVNAKFSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 332

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
              V V +LD D +  +I L +K    N  +
Sbjct: 333 SQEVEVMVLDVDPQKRRISLGLKQTMNNPWE 363



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
                 D      + +G++  + +FG F+   G  DG+VH+S L       +     K+G
Sbjct: 361 PWEGFLDRFPQGTLVEGEIKNITEFGLFIGLPGDIDGMVHLSDLDWATPGEQAIQNFKKG 420

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           D V  K+LD D ++ +I L +K +  +  +  V
Sbjct: 421 DVVKAKVLDVDVEKERISLGIKQLGADPYQDAV 453


>gi|116627481|ref|YP_820100.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMD-9]
 gi|116100758|gb|ABJ65904.1| SSU ribosomal protein S1P [Streptococcus thermophilus LMD-9]
          Length = 400

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFG FV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ + D  ++ LS+K +++   
Sbjct: 328 DVTVKVLEVNADAERVSLSIKALEERPA 355



 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +EA A E  + +    EV  +  G+V ++  F
Sbjct: 148 QFVGQEFDAKIKEVDPAENRFILSRREVVEAEAMEARKEVFSKLEVGSVVTGKVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD + VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|330890971|gb|EGH23632.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 774

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 543 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 597

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 598 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVV 657

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 658 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 717

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 718 MRMSDTPGEK 727


>gi|301119357|ref|XP_002907406.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4]
 gi|262105918|gb|EEY63970.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4]
          Length = 1158

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGA----RDGLVHISQLSTERVAKTSDVVKEGDTVW 671
             E+  IY G+V KVMDFG FV   G     ++GLVH+S LS  RV+   +  K GD V 
Sbjct: 197 ELELYGIYDGRVAKVMDFGVFVELEGFSREKKEGLVHVSNLSANRVSNVKEFAKRGDRVK 256

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           VKL+      K+ +SM+ VDQ TGK ++
Sbjct: 257 VKLISISGA-KLSMSMRDVDQRTGKDLM 283


>gi|227528910|ref|ZP_03958959.1| RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
 gi|227351184|gb|EEJ41475.1| RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
          Length = 169

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 42/72 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V ++ +FGAFV     + GLVHISQ+S   V    DV+  GDTV VK+   
Sbjct: 4   EVGAKVSGKVSEITNFGAFVDLDDNQTGLVHISQISNNYVKDIHDVLSVGDTVTVKVTKV 63

Query: 678 DDRGKIKLSMKV 689
            D GKI LSMK 
Sbjct: 64  GDDGKIALSMKD 75


>gi|161611290|ref|YP_139113.2| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
 gi|161936373|ref|YP_141003.2| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
 gi|312277998|gb|ADQ62655.1| Putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus thermophilus ND03]
          Length = 400

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        + +G+V ++ DFG FV      DGLVHISQ+S +RV    DV+  G 
Sbjct: 268 PWDGVEQKLAAGDVIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQ 327

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+ + D  ++ LS+K +++   
Sbjct: 328 DVTVKVLEVNADAERVSLSIKALEERPA 355



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + + ++  AK+   D    +   S    +EA A E  + +    EV  +  G+V ++  F
Sbjct: 148 QFVGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEVGSVVTGKVARLTSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER      VV  GD + VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|320103097|ref|YP_004178688.1| RNA-binding S1 domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319750379|gb|ADV62139.1| RNA binding S1 domain protein [Isosphaera pallida ATCC 43644]
          Length = 531

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +        I K +V K+MDFGAF     A +GL+HIS+L+  RV + SDV+KEGD
Sbjct: 394 PWDDLAQRLAPGDIVKVKVTKIMDFGAFAEIEPAVEGLIHISELANRRVNRVSDVLKEGD 453

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQ 692
            + VK+L  D    KI LS++   +
Sbjct: 454 ELEVKILSIDPAERKIALSLRQALE 478



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G+V  V DFGAFV   G  DGL+H+S +S  R      VV  G  + VK+L  D +
Sbjct: 321 QVRQGKVRTVRDFGAFVDL-GGVDGLLHVSDMSWVRNKDARAVVSVGQELTVKVLKIDRE 379

Query: 680 RGKIKLSMKVVDQNTGKPIV 699
             K+ L +K +  +    + 
Sbjct: 380 NRKVSLGLKQLTVSPWDDLA 399


>gi|331231447|ref|XP_003328387.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309307377|gb|EFP83968.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1205

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVAKTSDVVKEG 667
           +++   P + KIY G V  + DFG FV      G  +GLVH++ ++  RV   SD+V  G
Sbjct: 232 KALDTRPVLYKIYDGTVASIKDFGCFVTLKGVSGKAEGLVHVNAIAAGRVNHPSDLVSRG 291

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             V VK++      +I +SMK VDQNTG  +
Sbjct: 292 QPVKVKVVSIAGE-RIGISMKDVDQNTGADL 321


>gi|289646444|ref|ZP_06477787.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 773

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|282866057|ref|ZP_06275105.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
 gi|282559096|gb|EFB64650.1| RNA binding S1 domain protein [Streptomyces sp. ACTE]
          Length = 814

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 19/184 (10%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQT 581
           +A       L        ++     E  P V  M       + ++IG  G +     +  
Sbjct: 547 KAYEQCAGFLRIRGGDPLDASSVHPEAYPVVRTMVKRTGGDVASLIGNTGVLRSLRPDDF 606

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
                +D+   +   +  L E+E      R   R+ T    V KI         +G V  
Sbjct: 607 -----VDEKFGLPTVTDILKELEKPGRDPRPAFRTATFKEGVEKIGDLAPEMVLEGVVTN 661

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+ + D  R +I L+++
Sbjct: 662 VAAFGAFVDIGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKVKVREVDIPRKRISLTLR 721

Query: 689 VVDQ 692
           + D+
Sbjct: 722 LDDE 725


>gi|220930899|ref|YP_002507807.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
 gi|219992209|gb|ACL68812.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
          Length = 722

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 96/263 (36%), Gaps = 24/263 (9%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ES  +     +  +S +L+     I+  VA   +   ++   F    ++      LG 
Sbjct: 480 VVESAVNYVGVDLNTASPSLLKYVAGINSRVASNIVKYREENGKFETRDELLKV-KGLGK 538

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSESRLQLG 547
             F  A     I      +    I       A    +     +L+    + L E R +L 
Sbjct: 539 KTFTQAAGFLRIPDGTNPLDNTPIHPESYQAAKGLLQDVGFKLLDITDKEKLKEVREELD 598

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
                     I        +  G   ++ IV           D   K       E+    
Sbjct: 599 S---------INIKSRAEKLETGIPTLKDIV-----------DALKKPGRDPRDELPKPI 638

Query: 608 EMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                   +  E   + +G V  V+DFGAFV      DGLVHIS++S + V     VV+ 
Sbjct: 639 FRSDVLKMEDLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQV 698

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
           GDTV VK+L+ D+ R +I LSMK
Sbjct: 699 GDTVKVKILEVDERRNRISLSMK 721


>gi|229916479|ref|YP_002885125.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229467908|gb|ACQ69680.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 130

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E +++  G+V  +  FGAFV       GLVHIS++S + V   +D V+ G  V VK+L+ 
Sbjct: 5   EKDQVLTGKVTGIQPFGAFVALDDETQGLVHISEISHDYVKDVNDYVQVGQEVEVKILEV 64

Query: 678 DD-RGKIKLSMKVVDQNTGKP 697
           D+   KIKLSMK   +   + 
Sbjct: 65  DEASKKIKLSMKATQEAPKRE 85


>gi|118579778|ref|YP_901028.1| ribosomal protein S1 [Pelobacter propionicus DSM 2379]
 gi|118502488|gb|ABK98970.1| SSU ribosomal protein S1P [Pelobacter propionicus DSM 2379]
          Length = 579

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           I         I   +  KV   +     I  S  A ++  R   R +T    E  +I +G
Sbjct: 158 IRPSSDSDSYIGLTSKFKVIKLNQRRDNIVLSRRAILDEERAASRDVTLAKLEEGQIVEG 217

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
            V  V ++GAFV   G  DGL+H+S LS  RV K +DV+K G TV  K+L FD  +GKI 
Sbjct: 218 VVKNVTEYGAFVDL-GGVDGLLHVSDLSWGRVGKPADVLKPGQTVTAKVLKFDRTKGKIS 276

Query: 685 LSMKVVDQNTGKPI 698
           L +K    +    +
Sbjct: 277 LGVKQTLPDPWLDV 290



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV +M++GAFV      +GL+H+S++S   R+ + +DV+  GD V   +L  D +  K
Sbjct: 302 GRVVSLMEYGAFVELEPGVEGLIHVSEMSWTRRIRRAADVLSVGDEVEAVVLGIDMNNRK 361

Query: 683 IKLSMKVVDQNTG 695
           I L +K   +N  
Sbjct: 362 ISLGLKQAGENPW 374



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           +A       I +   V    +GQ+  + DFG F+      DGLVH+S +S  +R+    D
Sbjct: 368 QAGENPWMHIAEKYSVGTKIEGQIKNMTDFGMFIGIEDGIDGLVHVSDISWTKRIKHPGD 427

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V  +GD V   +L  D +  ++ L +K ++ +  
Sbjct: 428 VYAKGDIVQAVVLKVDVENERLSLGIKQLEPDPW 461



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            IV+    KV+++++       S   +         + T      K+  G+V  + DFG 
Sbjct: 433 DIVQAVVLKVDVENE-----RLSLGIKQLEPDPWSIAPTTYCPGAKV-TGKVTSLTDFGV 486

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           FV      +GL+H+S+LS E+V       + GDT+   +L  D +  +I LS+K +    
Sbjct: 487 FVELEEGVEGLIHVSELSREKVPTAKTFAEVGDTLEAIVLSCDPKERRISLSIKAMQAAV 546

Query: 695 GKP 697
            K 
Sbjct: 547 EKE 549



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            +++  D+G      S     E A     S+ D PE +KI +G VV+V      V     
Sbjct: 5   KRLDAADNGDFDDPDSEQQSNEFAELYKESLKDKPERDKIIEGTVVRVDQETVLVDIGLK 64

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD-QNTGKPI 698
            +G V  S+    R A     VK GD + V +   D  RG I LS K  D Q   + I
Sbjct: 65  SEGFVSASEF---RDANGELTVKVGDVIRVMMTREDGKRGYI-LSKKKADYQAAWEKI 118


>gi|149911351|ref|ZP_01899971.1| hypothetical protein PE36_23912 [Moritella sp. PE36]
 gi|149805591|gb|EDM65594.1| hypothetical protein PE36_23912 [Moritella sp. PE36]
          Length = 780

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 16/168 (9%)

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI--VEQTGAKV------NI 587
           S V  ES   + + T R         +I  +IG   ++++ +   + T AK       +I
Sbjct: 566 SGVHPESYPVIKDITQRTG------KKITEIIGNS-ELLKSLNPQDYTNAKFGLPTVQDI 618

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
             +              A  +         +     +G +  V +FGAFV     +DGLV
Sbjct: 619 LQELDKPGRDPRPEFKTATFKDGIEKITDLKPGMQLEGIISNVTNFGAFVDIGVHQDGLV 678

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           HIS L+   V    ++VK G  V VK+ + D  R +I L+M++ D+  
Sbjct: 679 HISALTNRFVKDPHEIVKAGQIVKVKVTEIDIARKRIALTMRLDDEVP 726


>gi|319942540|ref|ZP_08016850.1| 30S ribosomal protein S1 [Sutterella wadsworthensis 3_1_45B]
 gi|319803943|gb|EFW00861.1| 30S ribosomal protein S1 [Sutterella wadsworthensis 3_1_45B]
          Length = 574

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      +   +  AL+  +     +  ++   L+    
Sbjct: 81  DFVSVAIESVENGYGDTILSRDKAKRLAAWMNLEQALESGELVTGTVTGKVKGGLTVMTN 140

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK     V +   K N      V ++  ++ E  
Sbjct: 141 GIRAFLPGSLVDTRP---VKDTTPYEGKTFEFKVIKLDRKRN-----NVVVSRRAVVEAN 192

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+VV
Sbjct: 193 MGEERAKLLETLQEGA-IVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVV 250

Query: 665 KEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           + G  +  K+L FD    ++ L +K + ++  
Sbjct: 251 QVGQEITAKVLKFDKEKCRVSLGLKQLGEDPW 282



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I           G+V  + D+GAFV      +GLVH+S++    +      VV+ 
Sbjct: 280 DPWIGIARRYPKGTRLFGKVTNITDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVQL 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G+ V V +LD D DR +I L MK    N  + 
Sbjct: 340 GEEVEVMVLDIDEDRRRISLGMKQCKANPWEE 371



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      GQ+  + DFG F+   G  D
Sbjct: 348 LDIDEDRRRISLGMKQCKAN----PWEEFAQSHKKGDKVSGQIKSITDFGVFIGLPGGID 403

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        D V   K+GD V   +L  D +R +I L +K +  + 
Sbjct: 404 GLVHLSDLSWN--ESGEDAVRNFKKGDEVEAVVLAIDTERERISLGIKQLAGDP 455



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +     E   + KG V  V   GA +      +G +  S+++ +RV   + V+K
Sbjct: 452 AGDPFGTFASTHEKGSVIKGTVKTVDAKGAVIDLGNDVEGYLRASEIAADRVEDATTVLK 511

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           EG  V   ++  D + + I+LS+K  D    + 
Sbjct: 512 EGQEVEAAVISLDRKNRSIQLSIKAKDAAEARD 544


>gi|119475503|ref|ZP_01615856.1| Transcriptional accessory protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451706|gb|EAW32939.1| Transcriptional accessory protein [marine gamma proteobacterium
           HTCC2143]
          Length = 777

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I +G V  V +FGAF+     +DGLVHIS LS   V     VVK GD V VK+++ D 
Sbjct: 654 EMILEGTVTNVTNFGAFIDIGVHQDGLVHISALSNTFVKDPRAVVKAGDIVRVKVMEVDT 713

Query: 679 DRGKIKLSMKVVDQNT 694
            R +I LSM++ D+  
Sbjct: 714 QRKRIALSMRLDDKPE 729


>gi|90412697|ref|ZP_01220698.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
 gi|90326272|gb|EAS42691.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
          Length = 784

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G +  V +FGAFV     +DGLVHIS LS + ++   +VVK GD V VK+++ D  
Sbjct: 652 MILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKVMEVDLQ 711

Query: 680 RGKIKLSMKVVDQN 693
           R +I +SM++ D+ 
Sbjct: 712 RKRIAMSMRMGDEP 725


>gi|309365279|emb|CAP24120.2| CBR-MOG-5 protein [Caenorhabditis briggsae AF16]
          Length = 1220

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           EV KIY G+V  +  FGAF+   G R   +GLVHISQ+  ERV   +DV+K G  V VK+
Sbjct: 238 EVGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIKNERVQSVADVLKRGQAVKVKV 297

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698
               + GK   +MK VDQ TG+ +
Sbjct: 298 NKI-ENGKTSFTMKEVDQQTGEDL 320


>gi|298485218|ref|ZP_07003311.1| transcriptional accessory factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160206|gb|EFI01234.1| transcriptional accessory factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 773

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|157676012|emb|CAP07847.1| putative transcriptional accessory protein [Neisseria iguanae]
          Length = 764

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 9/157 (5%)

Query: 547 GEFTPRVEIMAIPPD-QIRNVIGMGGKVIR-----GIVEQTG--AKVNIDDDGTVKIASS 598
            E  P V  M         ++IG   ++ +        EQ G    ++I  +        
Sbjct: 559 PEAYPVVAKMLADKGIAAADLIGNREQIKQINPADYTTEQFGLPTVLDILAELEKPGRDP 618

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                 A            +V  I +G V  V +FGAFV     +DGLVHIS LS + V 
Sbjct: 619 RGEFQTATFAEGIHEIKDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQ 678

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              +VVK GD V VK+L+ D  R +I L+M++ D+  
Sbjct: 679 DPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPE 715


>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
          Length = 403

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+ +    I S   A ++        +    +   + +G V  V DFGAFV   GA D
Sbjct: 202 IEINRNRNRLILSERQAAMDMREGRKGELLSALKEGDVREGIVTSVCDFGAFVDIGGA-D 260

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH+S++S  R+    +V+K GD V V +L  D +R +I LS+K       
Sbjct: 261 GLVHLSEISWSRIKHPGEVLKPGDKVQVYVLSIDNERKRIALSLKRTQHEPW 312



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   ++ +  ++ ++ +G V ++  FGAFV      +GL+H+S++   RV    DV++EG
Sbjct: 310 EPWATVGERYQIGQMVEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEG 369

Query: 668 DTVWVKLLDFDD-RGKIKLSMK 688
           D V  +++  D  R +I LSM+
Sbjct: 370 DVVQARIIRIDPARKRIGLSMR 391


>gi|299133337|ref|ZP_07026532.1| ribosomal protein S1 [Afipia sp. 1NLS2]
 gi|298593474|gb|EFI53674.1| ribosomal protein S1 [Afipia sp. 1NLS2]
          Length = 566

 Score = 91.1 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 98/250 (39%), Gaps = 16/250 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKI 509
           I K +A I +GL  +G   +   +  G E+ L   D      D      G   +  D   
Sbjct: 41  IEKDMAVIDVGLKTEGRVALREFNGPGRENTLKVGDEVEVFLDRIENALGEAVLSRDKAR 100

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              S   +  A    ++    I N++    +        F PR     +    IR+V   
Sbjct: 101 REESWGKLEKAFNANEKVHGVIFNQVKGGFTVDLDGAVAFLPRS---QVDIRPIRDV--- 154

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
              ++         K++      V    + L E  A  E  + +    E  ++  G V  
Sbjct: 155 -APLMNNPQPFQILKMDRRRGNIVVSRRTVLEETRA--EQRQELVQNLEEGQVIDGVVKN 211

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  + +  +I L MK
Sbjct: 212 ITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMK 270

Query: 689 VVDQNTGKPI 698
            +  +  + I
Sbjct: 271 QLLDDPWQGI 280



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N    G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 275 DPWQGIEAKYPLNARVTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 335 SQEVEVQVLEVDSAKRRISLGLKQTMRNPWE 365



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R       +   V    +G+V    +FG F+   G  DG+VH+S L  ++   +  D  K
Sbjct: 361 RNPWEVFVEKFPVGSTVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWKQPGEQVIDNFK 420

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K ++ + 
Sbjct: 421 KGDMVKAVVLDVDVEKERISLGVKQLEGDP 450



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +++ V D G  V   G      +  S+L+ +R  + ++    G+ V  +++ FD +
Sbjct: 462 VVTCEILDVKDAGIDVQIAGTDFTTFIKRSELARDRNDQRAERFAVGEKVDARVIQFDKK 521

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 522 ARKVQVSIKALEVAEEKEAI 541


>gi|330986824|gb|EGH84927.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 773

 Score = 91.1 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|316931461|ref|YP_004106443.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris DX-1]
 gi|315599175|gb|ADU41710.1| ribosomal protein S1 [Rhodopseudomonas palustris DX-1]
          Length = 565

 Score = 91.1 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 231 DIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 279



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I    +     
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIK---INHETH 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L++  + +         FT RV  +      +   +  G + +  + E + 
Sbjct: 263 RISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 320

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     ++                  R       +   V    +G+V
Sbjct: 321 TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHPVGSTVEGEV 380

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L  ++   +  D  K+GD V   +LD D ++ +I L
Sbjct: 381 KNKTEFGLFLGLDGDVDGMVHLSDLDWKQPGEQVIDNFKKGDMVKAVVLDVDVEKERISL 440

Query: 686 SMKVVDQNT 694
            +K ++ + 
Sbjct: 441 GVKQLEGDP 449



 Score = 44.9 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+ V + G  V   G   +  +  S+L+ +R  + SD    G+ V  +++ FD +
Sbjct: 461 VVTCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 521 ARKVQVSIKALEVAEEKEAI 540


>gi|39933144|ref|NP_945420.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris CGA009]
 gi|192288500|ref|YP_001989105.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris TIE-1]
 gi|81564498|sp|Q6NDP1|RS1_RHOPA RecName: Full=30S ribosomal protein S1; AltName: Full=RRP-S1
 gi|39652769|emb|CAE25508.1| ribosomal protein S1 [Rhodopseudomonas palustris CGA009]
 gi|192282249|gb|ACE98629.1| ribosomal protein S1 [Rhodopseudomonas palustris TIE-1]
          Length = 565

 Score = 91.1 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 231 DIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 279



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 95/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I    +     
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIK---INHETH 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L++  + +         FT RV  +      +   +  G + +  + E + 
Sbjct: 263 RISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 320

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     ++                  R       +   V    +G+V
Sbjct: 321 TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHPVGSTVEGEV 380

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L  +    +  D  K+GD V   +LD D ++ +I L
Sbjct: 381 KNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISL 440

Query: 686 SMKVVDQNT 694
            +K ++ + 
Sbjct: 441 GVKQLEGDP 449



 Score = 44.9 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+ V + G  V   G   +  +  S+L+ +R  + SD    G+ V  +++ FD +
Sbjct: 461 VVTCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 521 ARKVQVSIKALEVAEEKEAI 540


>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040133|gb|ACT56929.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 576

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     I  S  A +E +R   RS      E  ++ +G V  + D+G FV   G  DGL+
Sbjct: 166 DKRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSG-VDGLL 224

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           H++ ++  R+   S V+  G  V VK++  + +  +I L MK +++N    +
Sbjct: 225 HVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDV 276



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-R 680
             G V  + D+G FV      +GL HISQ+S  ++    S ++  G  V V +L+ +  R
Sbjct: 286 VSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPAR 345

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L +K    N  + 
Sbjct: 346 KRISLGLKQALINPWEE 362



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A        +         +G+V    DFG F+      DG++H+S L   R   K   
Sbjct: 354 QALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIA 413

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
              +GD V   +LD D  + +I L +K +
Sbjct: 414 EYAKGDIVKAVVLDIDVGKERISLGVKQL 442



 Score = 44.9 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           N +   +V+ V + G  V     +  +  +  S LS +RV +      +G  V   +++ 
Sbjct: 459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNV 518

Query: 678 DDR-GKIKLSMKVVD 691
             + GK+ LS+K ++
Sbjct: 519 SKKDGKVSLSIKALE 533


>gi|209883625|ref|YP_002287482.1| ribosomal protein S1 [Oligotropha carboxidovorans OM5]
 gi|209871821|gb|ACI91617.1| ribosomal protein S1 [Oligotropha carboxidovorans OM5]
          Length = 566

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 98/250 (39%), Gaps = 16/250 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKI 509
           I K +A I +GL  +G   +   +  G E+ L   D      D      G   +  D   
Sbjct: 41  IEKDMAVIDVGLKTEGRVALREFNGPGRENTLKVGDEVEVFLDRIENALGEAVLSRDKAR 100

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              S   +  A    ++    I N++    +        F PR     +    IR+V   
Sbjct: 101 REESWGKLEKAFNANEKVSGIIFNQVKGGFTVDLDGAVAFLPRS---QVDIRPIRDV--- 154

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
              ++         K++      V    + L E  A  E  + +    E  ++  G V  
Sbjct: 155 -APLMNNPQPFQILKMDRRRGNIVVSRRTVLEETRA--EQRQELVQNLEEGQVIDGVVKN 211

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  + +  +I L MK
Sbjct: 212 ITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMK 270

Query: 689 VVDQNTGKPI 698
            +  +  + I
Sbjct: 271 QLLDDPWQGI 280



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N    G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 275 DPWQGIEAKYPLNARVTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 335 SQEVEVQVLEVDSAKRRISLGLKQTMRNPWE 365



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R       +   V    +G+V    +FG F+   G  DG+VH+S L  ++   +  D  K
Sbjct: 361 RNPWEVFVEKFPVGSTVEGEVKNKTEFGLFLGLEGDVDGMVHLSDLDWKQPGEQVIDNFK 420

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K ++ + 
Sbjct: 421 KGDMVKAVVLDVDVEKERISLGVKQLEGDP 450



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +++ V D G  V   G      +  S+L+ +R  + ++    G+ V  +++ FD +
Sbjct: 462 VVTCEILDVKDAGIDVQIAGTDFTTFIKRSELARDRNDQRAERFAVGEKVDARVIQFDKK 521

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 522 ARKVQVSIKALEVAEEKEAI 541


>gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 705

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  +   +     +   I +G+VV+ ++FGAF+      +GL HISQLS + VAKT DV
Sbjct: 569 EAQPDPFETFMKQYKSGDIVQGKVVRTVNFGAFIEITPGVEGLCHISQLSDDHVAKTQDV 628

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           V EGD V VK+L  DD + K+ LS+K     + K 
Sbjct: 629 VNEGDQVTVKILSIDDQQKKVSLSIKEAQGKSKKE 663



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 18/250 (7%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           A++D G      V    M  +K+G+    L      E     +       + G   +   
Sbjct: 341 AMIDVGYKFEGSVPVNEM-PIKEGESLEDLL----SEGDEIDVKVVKVDDEEGQLILSKK 395

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
                     +   ++  +  +  +  E+   L     QL  F P      +    + ++
Sbjct: 396 WADKDKQWEQLEQLMENDEEIKAQVTEEVKGGLVVDLGQLQGFIPASH---VDIHYVPDL 452

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKG 625
                   + + E+   K    D    KI  S    +E  +E  ++ T        I  G
Sbjct: 453 -------SKYVGEELRLKPIELDRSRNKIVLSQKNILEQEQEEKKNKTMETITEGDIVDG 505

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
            V ++ DFGAF+   G  DGL HISQ+S  R+      ++ G+ V VK+L  D    +I 
Sbjct: 506 TVKRLTDFGAFIDI-GGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERIS 564

Query: 685 LSMKVVDQNT 694
           LS+K    + 
Sbjct: 565 LSIKEAQPDP 574



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
            I+ +V +       +++       S+    +   +      D  +  ++ KG+VVKV +
Sbjct: 279 TIKEVVGKMREFEEQNENLNTNSDESTQESQDELMKATEDSADKLDRGQVVKGKVVKVTE 338

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
             A +      +G V ++++  +      D++ EGD + VK++  DD  G++ LS K  D
Sbjct: 339 DEAMIDVGYKFEGSVPVNEMPIKEGESLEDLLSEGDEIDVKVVKVDDEEGQLILSKKWAD 398

Query: 692 QN 693
           ++
Sbjct: 399 KD 400


>gi|187918006|ref|YP_001883569.1| 30S ribosomal protein S1 [Borrelia hermsii DAH]
 gi|119860854|gb|AAX16649.1| SSU ribosomal protein S1P [Borrelia hermsii DAH]
          Length = 555

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            + I + I +G K+   I++ +           V      L+          S+    ++
Sbjct: 225 VENIEDFIRVGDKLRLQIIKLS-----------VNTGKMELSLKALKANPWDSVESRYKI 273

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD 678
             I KG+VVK++ FGA V       G +HIS  S  RV     ++VK G  V VK+L+ D
Sbjct: 274 ESIVKGKVVKILPFGAVVELDSEISGFLHISNFSWVRVIKSPQELVKVGQIVEVKILEID 333

Query: 679 DRG-KIKLSMKVVDQNTG 695
               KI L +K V++N  
Sbjct: 334 KENQKISLGIKQVNENPW 351



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           +    +  F P      I  +++       G V+   V Q         DG   I     
Sbjct: 119 QINENVTGFMPSYLSSKIRDEKL-----KRGLVVEFYVIQADKT-----DGLRLILDRRT 168

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            E E      + + +      I  G V ++ D+GA +       G++H   ++  RV   
Sbjct: 169 LERERELLKRKELVNSYSEGDIVDGVVERITDYGAIIKVKNLVLGVLHKRNIAFSRVENI 228

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            D ++ GD + ++++    + GK++LS+K +  N    +
Sbjct: 229 EDFIRVGDKLRLQIIKLSVNTGKMELSLKALKANPWDSV 267



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +   GAFV      D  +    +S        +  K G ++  K+++FD  +  I+L +
Sbjct: 370 NITKTGAFVSIEEGIDAYISKFDISWVDEINPEEYFKLGSSISGKVIEFDAKKQNIRLGI 429

Query: 688 KVVDQNTGKP 697
           K +++N    
Sbjct: 430 KQLEENPWDD 439


>gi|117928296|ref|YP_872847.1| 30S ribosomal protein S1 [Acidothermus cellulolyticus 11B]
 gi|117648759|gb|ABK52861.1| SSU ribosomal protein S1P [Acidothermus cellulolyticus 11B]
          Length = 515

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FGAFV      +GLVHIS+LS   V     VV+ G
Sbjct: 291 DPWQLFARTHSLGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELSDRHVEIPEQVVQVG 350

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D ++VK++D D +R +I LS+K   +
Sbjct: 351 DEIFVKIIDIDLERRRISLSLKQALE 376



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  A +E  + E+ ++     +  +I  G V  +++FGAFV 
Sbjct: 177 KLEAKIIELDKNRNNVVLSRRAYLEQTQSEVRQTFLTTLKKGQIRNGVVSSIVNFGAFVD 236

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 237 L-GGVDGLVHVSELSWKHIDHPSEVVEVGMPVTVEVLDVDLDRERVSLSLKSTQEDPWQ 294



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G VVKV      +      +G++   +LS +      +VVK GD +   +L   D 
Sbjct: 46  DIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDRIEALVLQKEDK 105

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 106 DGRLILSKKRAQ 117


>gi|253578799|ref|ZP_04856070.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849742|gb|EES77701.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 358

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 14/182 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------K 572
            ++    R  +L        +  ++       VE            I +GG        +
Sbjct: 165 RRRIIGNRKQLLLAEKAEKQKELMEKIHVGDTVEGTVKNVTDFGAFIDLGGADGLLHISE 224

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQV 627
           +  G VE       + D   V I   +  +I  + +   +   +          + KG+V
Sbjct: 225 MSWGRVENPKKVFTVGDKVKVLIKEINGEKIALSLKFPEANPWLTAAEDFAVGNVVKGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E VAK SDV+  G  +  K++DF+ +  KI LS
Sbjct: 285 ARMTDFGAFVELAPGVDALLHVSQISREHVAKPSDVLSIGQEIEAKVVDFNGEDKKISLS 344

Query: 687 MK 688
           MK
Sbjct: 345 MK 346



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I +G V+ V +    ++     DG++  ++ S +     +D V  G
Sbjct: 8   QMLEDSVKTIRNGEIVQGTVIDVKEDEIILNIGYKADGIITKNEYSNDASLVLTDAVHVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +    G
Sbjct: 68  DTMEAKVLKVNDGEGQVTLTYKRLAAEKG 96


>gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
 gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
          Length = 566

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 11/153 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +I  +PP  ++  +G          +    K+N DD   V ++   L E E 
Sbjct: 124 VEAFLPGSQIDIVPPKDLQQFVGNT-------YDFKIVKIN-DDRKNVVLSRRELIEAER 175

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +  R   D  +V    KG V  + DFGAF+   G  DGL+HI+ ++  R+   S++VK
Sbjct: 176 AEKRQR-FMDTIKVGSTVKGVVKNLTDFGAFIDLDGM-DGLLHITDMTWGRLGHPSELVK 233

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            G  + V +LD + ++ ++ L +K   +N  + 
Sbjct: 234 VGQELDVIVLDINKEKERVSLGLKQTQKNPWEE 266



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID             E     +  + I +  ++  + KG+V K+  FGAF+   G  D
Sbjct: 417 IDIDKQNQRISLGIKQLEG----DPWKEIENKYKIGDLVKGKVSKITTFGAFISLEGDID 472

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           GL+HISQ+S +RV K  D +K G  V  +++  D    +I LS+K  +
Sbjct: 473 GLIHISQISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAAN 520



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 105/255 (41%), Gaps = 16/255 (6%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGIS--- 513
           V     G+VK+  DF    D+ G +   H+  M +   G  S +  +  ++ +  +    
Sbjct: 188 VGSTVKGVVKNLTDFGAFIDLDGMDGLLHITDMTWGRLGHPSELVKVGQELDVIVLDINK 247

Query: 514 -ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
            +  + + L+Q ++           V S+ + ++    P    + I  + +  +I +   
Sbjct: 248 EKERVSLGLKQTQKNPWEETENRFPVGSKVKGKITNLVPYGAFVEI-EEGVEGLIHVSEL 306

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKG 625
                + +    + +  +    +   +  E + +             I    ++ +  KG
Sbjct: 307 SWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEIEHRYQIGRQVKG 366

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
            V  +  +GAFV      DG++H+S +S  ++V   S+V+K+GD +   ++D D +  +I
Sbjct: 367 TVRNLTAYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQNQRI 426

Query: 684 KLSMKVVDQNTGKPI 698
            L +K ++ +  K I
Sbjct: 427 SLGIKQLEGDPWKEI 441



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 11/209 (5%)

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           D  I  +  D K   +S   ++ A +  KR R     ++   +      L +F   +++ 
Sbjct: 150 DFKIVKINDDRKNVVLSRRELIEAERAEKRQRFMDTIKVGSTVKGVVKNLTDFGAFIDLD 209

Query: 557 AIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
            +       D     +G   ++++   E     ++I+ +           +    +    
Sbjct: 210 GMDGLLHITDMTWGRLGHPSELVKVGQELDVIVLDINKEKERVSLGLKQTQ----KNPWE 265

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTV 670
              +   V    KG++  ++ +GAFV      +GL+H+S+LS  +R+ + SDV+  G  V
Sbjct: 266 ETENRFPVGSKVKGKITNLVPYGAFVEIEEGVEGLIHVSELSWTKRITRPSDVLTVGQEV 325

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
              +L  + +  KI L ++ ++ N    I
Sbjct: 326 EAVVLGVNKEEQKISLGVRQLEPNPWDEI 354



 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            +   +++I       +  +I KG++++V      V      +G V +S+         +
Sbjct: 4   SMLEMKDLIAKSFREFKEGQIVKGRIIEVRPREVLVDIGYKSEGAVSLSEFDD------A 57

Query: 662 DVVKEGDTVWVKLLDF-DDRGKIKLSM-KVVDQNTGKPIV 699
           D ++ GD V V +L   ++ G + LS  K   +   + IV
Sbjct: 58  DDIQIGDEVEVLILRLENEEGSVILSKEKAAYRQNWEKIV 97


>gi|195058010|ref|XP_001995368.1| GH22675 [Drosophila grimshawi]
 gi|193899574|gb|EDV98440.1| GH22675 [Drosophila grimshawi]
          Length = 1243

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWV 672
           PE  KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV    TV V
Sbjct: 280 PEAGKIYSGKVANIVPFGCFVQLFGVRKRWEGLVHISQLRAEGRVTDVTEVVARNQTVKV 339

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K++    + K+ LSMK VDQ TG+ +
Sbjct: 340 KVMSLAGQ-KVSLSMKEVDQETGRDL 364


>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 514

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G +  +  FGAFV     RDGLVHIS+LS   VA+  DVVK GD V V++LD 
Sbjct: 322 EKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNTHVARVEDVVKVGDRVQVRVLDV 381

Query: 678 DDR-GKIKLSMKVVD 691
           D +  +I LS+++ D
Sbjct: 382 DPQSKRISLSLRLED 396



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
            +G+V  +  +G FV     RDGLVHIS++S  R+   SD+VK GDTV V++   +  G 
Sbjct: 145 LEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGR 204

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L+M+   + + +P
Sbjct: 205 RISLTMRT-KERSAEP 219



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   KV    VE  G ++++      + A       +   E+         V    +G 
Sbjct: 188 IGDTVKVRVKSVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEGT 247

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKL 685
           V  +  FG FV     +DGLVH+S+L+  RV K  DVV+ G T   K+L+ D  G +I L
Sbjct: 248 VTGMAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARISL 307

Query: 686 SMKVVD 691
           S++   
Sbjct: 308 SLRRAQ 313


>gi|332143380|ref|YP_004429118.1| Transcriptional accessory protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553402|gb|AEB00121.1| Transcriptional accessory protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 788

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +      +  +   I +G V  V +FGAFV     +DG
Sbjct: 614 DILKELDKPGRDPRPEFKTAAFKEGVETINDLKPGMILEGVVSNVANFGAFVDVGVHQDG 673

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           LVHIS L+ + ++   +VVK GD V VK+L+ D  R +I  +M++ D
Sbjct: 674 LVHISALTNKFISDPREVVKAGDIVKVKVLEVDVARKRISFTMRLDD 720


>gi|94310177|ref|YP_583387.1| RNA binding S1 [Cupriavidus metallidurans CH34]
 gi|93354029|gb|ABF08118.1| Putative RNA-binding transcription accessory protein [Cupriavidus
           metallidurans CH34]
          Length = 787

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVHIS LST+ V    +VVK G  V 
Sbjct: 655 EDVKDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVK 714

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+++ D  R +I L+M++ D+ 
Sbjct: 715 VKVMEVDVKRNRIGLTMRLDDEP 737


>gi|289627976|ref|ZP_06460930.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866569|gb|EGH01278.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 773

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN------------KIYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQVGVEELKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|257481800|ref|ZP_05635841.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|320322223|gb|EFW78319.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331861|gb|EFW87799.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873008|gb|EGH07157.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|331009434|gb|EGH89490.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 773

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|225027431|ref|ZP_03716623.1| hypothetical protein EUBHAL_01687 [Eubacterium hallii DSM 3353]
 gi|224955258|gb|EEG36467.1| hypothetical protein EUBHAL_01687 [Eubacterium hallii DSM 3353]
          Length = 628

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 22/201 (10%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE-IMAI-----PPDQIRNVI 567
           + I  +  +   R R  I +    +++E + +      ++E  M +             I
Sbjct: 429 QEIEFVITEFNPRKRRIIGDRKQLLVAEKKAKQEALFAKIEAGMTVEGTVKNVTDFGAFI 488

Query: 568 GMGG--------KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +GG        ++  G VE       + +   V I      +I  + +   +   +   
Sbjct: 489 DLGGADGLLHISEMSWGRVENPKKVFTVGEKLNVLIKDIQGEKIALSLKFPETNPWLHAD 548

Query: 620 NKI-----YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            K        G+V ++ DFGAFV      D L+H+SQ++ E + K SDV+K G  V  K+
Sbjct: 549 EKYAVGNEVTGKVARMTDFGAFVELEPGVDALLHVSQIAKEHIEKPSDVLKVGQEVTAKV 608

Query: 675 LDF--DDRGKIKLSMKVVDQN 693
           +DF  DDR KI LS+K +D  
Sbjct: 609 VDFKKDDR-KISLSIKALDNE 628



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +   +    ++    E     +G V  V DFGAF+   GA DGL+HIS++S  RV     
Sbjct: 454 VAEKKAKQEALFAKIEAGMTVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 512

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V   G+ + V + D     KI LS+K  + N  
Sbjct: 513 VFTVGEKLNVLIKDI-QGEKIALSLKFPETNPW 544



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 12/234 (5%)

Query: 474 IILSDISGDEDHLGHMDFKV------AGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           I++ +    E      D K+          +    +   +   G   N+        +  
Sbjct: 140 IVIENREQAEGIELDADTKISIVSQTTFNYNKFQDLVEIISEKGYDINVFNTICNATEER 199

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-----G 582
           +  +     K  +   +     +   ++  I   +  N   +  K    + + +     G
Sbjct: 200 QTEVRELAKKSDAMIVIGGRHSSNTQKLFEISKKECSNTFYIQTKNDLNMEDFSNIGMLG 259

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
                     +           +  +M+          ++ +G ++ V +    ++    
Sbjct: 260 ITAGASTPNNIIKEVHESMAEMSFDQMLEESFKTIRNGEVVQGTIIDVKEDEIILNIGYK 319

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
            DG++  ++ S ++    + V K GD +  K+L   D  G++ L+ K +    G
Sbjct: 320 ADGIISRNEYSNDQNLDLTTVAKVGDEMEAKVLKVNDGEGQVLLTYKRLKAEKG 373


>gi|182679847|ref|YP_001833993.1| 30S ribosomal protein S1 [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635730|gb|ACB96504.1| ribosomal protein S1 [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 577

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 16/250 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKI 509
           I K VA I +GL  +G   +      G E  L   D      +      G   +  D   
Sbjct: 40  IEKDVAVIDIGLKTEGRVALKEFQGPGREGSLQVGDEVEVYLERIENALGEAVISRDKAR 99

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              S   +  A +  ++    I N++    +        F PR     +    IR+V  +
Sbjct: 100 REESWVKLEKAFENQEKVEGIIFNQVKGGFTVDLDGAVAFLPRS---QVDIRPIRDVAPL 156

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
                   + +   +      G + ++  ++ E   A +    + ++ E  ++ +G V  
Sbjct: 157 MQVPQPFQILKMDRRR-----GNIVVSRRTVLEESRAEQRHEIVANLEEG-QVIEGMVKN 210

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+H++ ++  RV   ++V+  G TV VK++  + +  +I L MK
Sbjct: 211 ITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVRVKIIKINHETHRISLGMK 269

Query: 689 VVDQNTGKPI 698
            +  +  + I
Sbjct: 270 QLLDDPWQGI 279



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPINARFHGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVAT 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K    N  +
Sbjct: 334 SQEVDVQVLEVDPVKRRISLGLKQTLANPWE 364



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              +  +   V    +G+V    +FG F+   G  DG+VH+S L   +   +  +  K+G
Sbjct: 362 PWETFAEKYPVGSEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNKPGEQAIEDYKKG 421

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V  K+LD D ++ +I L +K +  + 
Sbjct: 422 DIVRAKVLDVDMEKERISLGIKQLASDP 449



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTS 661
              A E+    +   +   +   +V++V + G  V   G      +  ++L+ +R  +  
Sbjct: 451 AVKAPEVAGEESGDLKKGAVVTCEVLEVKEGGLEVQIAGTDLTAFIKRAELARDRADQRP 510

Query: 662 DVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           +    G+ V V++  FD R  KI +S+K ++    K  +
Sbjct: 511 ERFAVGEKVDVRITQFDRRARKIAVSIKALEVAEEKEAI 549


>gi|71737579|ref|YP_272550.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558132|gb|AAZ37343.1| S1 RNA binding domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 773

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 20/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQ-IRNVIGMGGKVIRGIVE 579
           ++        L  M+     +S     E  P V+ +A   D+ IR++IG         ++
Sbjct: 542 EKTFEQAAGFLRVMTGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIG-----DASFLK 596

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK------------IYKGQV 627
           +   K   D+   +   +  L E+E      R      E               I +G V
Sbjct: 597 RLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVV 656

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V +FGAFV     +DGLVHIS LS + +    + VK GD V VK+++ D  R ++ LS
Sbjct: 657 TNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLS 716

Query: 687 MKVVDQNTGK 696
           M++ D    K
Sbjct: 717 MRMSDTPGEK 726


>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
          Length = 277

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 70  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 116

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 117 TLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 176

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+   L  DG   ++L   S  E     +
Sbjct: 177 NAACMALVDAGVPMRALFCGVTCALDSDGT--LVLDPTSKQEKEARAV 222



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +                 P
Sbjct: 84  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLP 129

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 130 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 189

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 190 MRALFCGVTCALDSDGTLVLDPTSKQEK 217


>gi|256783809|ref|ZP_05522240.1| transcriptional accessory protein [Streptomyces lividans TK24]
          Length = 780

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK++D D  
Sbjct: 654 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKVKVMDVDIP 713

Query: 680 RGKIKLSMKVVDQ--NTGKP 697
           R +I L++++ D+    G+P
Sbjct: 714 RKRISLTLRLDDEAAPQGEP 733


>gi|268531160|ref|XP_002630706.1| C. briggsae CBR-MOG-5 protein [Caenorhabditis briggsae]
          Length = 1205

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           EV KIY G+V  +  FGAF+   G R   +GLVHISQ+  ERV   +DV+K G  V VK+
Sbjct: 238 EVGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIKNERVQSVADVLKRGQAVKVKV 297

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698
               + GK   +MK VDQ TG+ +
Sbjct: 298 NKI-ENGKTSFTMKEVDQQTGEDL 320


>gi|21225037|ref|NP_630816.1| transcriptional accessory protein [Streptomyces coelicolor A3(2)]
 gi|4584490|emb|CAB40693.1| putative transcriptional accessory protein [Streptomyces coelicolor
           A3(2)]
          Length = 780

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK++D D  
Sbjct: 654 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKVKVMDVDIP 713

Query: 680 RGKIKLSMKVVDQ--NTGKP 697
           R +I L++++ D+    G+P
Sbjct: 714 RKRISLTLRLDDEAAPQGEP 733


>gi|289767691|ref|ZP_06527069.1| transcriptional accessory protein [Streptomyces lividans TK24]
 gi|289697890|gb|EFD65319.1| transcriptional accessory protein [Streptomyces lividans TK24]
          Length = 787

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK++D D  
Sbjct: 661 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKVKVMDVDIP 720

Query: 680 RGKIKLSMKVVDQ--NTGKP 697
           R +I L++++ D+    G+P
Sbjct: 721 RKRISLTLRLDDEAAPQGEP 740


>gi|260654143|ref|ZP_05859633.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
 gi|260631128|gb|EEX49322.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
          Length = 500

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +V  +  G V  +  FGAFV+     DGLVH+S++S +R AK  D++K+G
Sbjct: 186 ARREEFYQNVKVGDVVDGTVSSLTSFGAFVNVGP-IDGLVHLSEISWQRSAKIKDLLKKG 244

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK++  D +  KI LSM+ V  +  
Sbjct: 245 DEVKVKVIGIDRENNKISLSMRQVQGDPW 273



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 7/133 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I     VIR   E     ++++ D                 +    I +     +  + +
Sbjct: 320 IKHPRDVIRKGQEIEVVVLDVEADRRRMSLGYKQLN-----DPWNGIENRYAKGQDVQVK 374

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           VV++ DFGAFV      +GL+HISQLS++RV K  DV+ EG  V  ++L+ +    +I+L
Sbjct: 375 VVRLADFGAFVELEEGVEGLIHISQLSSKRVDKPKDVLTEGQEVTARILEVNPTERRIRL 434

Query: 686 SMKVVD-QNTGKP 697
           S++ ++    GKP
Sbjct: 435 SLRALEAPEAGKP 447



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +I++++  G        E     + ID +      S    +     +   ++T+     +
Sbjct: 236 KIKDLLKKGD-------EVKVKVIGIDRENNKISLSMRQVQG----DPWDTVTERWTKGQ 284

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
              G V  V DFGAFV      +GLVHI  LS  R+    DV+++G  + V +LD + DR
Sbjct: 285 TTTGVVTNVTDFGAFVEVEPGIEGLVHIGDLSWARIKHPRDVIRKGQEIEVVVLDVEADR 344

Query: 681 GKIKLSMKVVDQN 693
            ++ L  K ++  
Sbjct: 345 RRMSLGYKQLNDP 357


>gi|320007277|gb|ADW02127.1| Tex-like protein [Streptomyces flavogriseus ATCC 33331]
          Length = 808

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK++D D  
Sbjct: 652 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKVKVMDVDIP 711

Query: 680 RGKIKLSMKVVDQNTG 695
           R ++ L++++ D+ T 
Sbjct: 712 RKRVSLTLRLDDEATA 727


>gi|116749549|ref|YP_846236.1| 30S ribosomal protein S1 [Syntrophobacter fumaroxidans MPOB]
 gi|116698613|gb|ABK17801.1| SSU ribosomal protein S1P [Syntrophobacter fumaroxidans MPOB]
          Length = 596

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIR 564
           D + G I  +    A  +       I NE   +  +   ++       + + A  P    
Sbjct: 106 DDEDGTIHLSKEKAAKIKVWDDISRIYNEDGIIEGKVVSKVKGGLAVDIGVQAFLPGSQV 165

Query: 565 NVIGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKI 622
           ++  +  + +  ++ QT   KV   +     +  S  A +E  RE ++S T    E  K+
Sbjct: 166 DLRPV--RNLEFLIGQTFPFKVLKYNKKRRNVVLSRRALLEKEREQMKSQTLANLEDGKV 223

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  + D+G FV   G  DGL+HI+ +S  RV   S++ + GD + V +L FD D  
Sbjct: 224 VEGIVKNITDYGVFVDL-GGIDGLLHITDMSWGRVGHPSELFQIGDRIKVMVLSFDRDHE 282

Query: 682 KIKLSMKVVDQNTG 695
           ++ L +K +  +  
Sbjct: 283 RVSLGLKQLVADPW 296



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
           A    R+ +  P   ++  G+VV + D+GAFV      +GL+H+S++S  ++V   S V+
Sbjct: 293 ADPWTRAESKYPIGTRV-NGRVVSLTDYGAFVEIEEGVEGLIHVSEMSWTKKVRHPSKVL 351

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             GD V   +L  + +  +I L MK ++ N    I 
Sbjct: 352 NVGDEVEAVVLSINPENKRISLGMKQLEPNPWDIIA 387



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I     V     G++  + DFG F+      DGLVHIS +S  +RV   S+V ++ 
Sbjct: 382 PWDIIAQKYPVGTTIAGKIKNITDFGVFIGIDEGIDGLVHISDISWTKRVKHPSEVFRKN 441

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             V   +L+ D D  +  L +K ++ +  + I
Sbjct: 442 QEVQAIVLNIDKDNERFSLGIKQLEPDPWESI 473



 Score = 71.1 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     +NID D           E     +   SI +   +  +  G +  V DFG FV
Sbjct: 442 QEVQAIVLNIDKDNERFSLGIKQLEP----DPWESIPERYPLGSVISGPITNVTDFGLFV 497

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
                 +GLVH+S++S E++       K  + +  K+++   +  KI LS+K V++   +
Sbjct: 498 ELEEGIEGLVHVSEISKEKIKSPVGQYKTAERITAKVINISPKDRKIGLSIKKVEEQEER 557


>gi|225872519|ref|YP_002753974.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793377|gb|ACO33467.1| S1 RNA binding domain protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 753

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E ++ ITD+ E   + +G V  V  FGAFV     +DGLVHIS+LS   + + S+ VK G
Sbjct: 636 EGVKEITDLKEG-MVLEGVVTNVTKFGAFVDVGVHQDGLVHISELSNRFIKEPSEAVKAG 694

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             V VK+L  D +  +I LSM+ + +  G+
Sbjct: 695 QIVRVKVLSADAKTKRIALSMRALMEPIGR 724


>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
 gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
          Length = 219

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 20/210 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE---DEQYVDSLSGTQRNDFMMHY 378
           +R    +  LL R  GS+   +GDT  +  V  G  E    E+ +D           +  
Sbjct: 11  LRSFECEQNLLSRPDGSASVRQGDTSVLAAV-YGPGEVKMSEEIID--------KATLKV 61

Query: 379 NFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSM 438
            F P       ++G P   E    RL R     V+         + IV ++ +  GS   
Sbjct: 62  IFKP-------KIGLPGCAEKLQERLLRNTCESVVLAILHPRSGVNIVLQVIQDSGSLLS 114

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
             +  + +AL+D+ VP+   V+ +   ++++G   ++  D   +++    + F     ++
Sbjct: 115 CCINAACMALVDSAVPMKCLVSAVTCAVMEEG-RIVLDPDSKQEKESSAVLTFAFDSREN 173

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGR 528
            +                 + A   A +  
Sbjct: 174 NVVTCSTKGCYTPEKYQECLSACGAASKNI 203



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 25/180 (13%)

Query: 28  DGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K   +  D   L V ++ +                 P
Sbjct: 25  DGSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLKVIFKPKI--------------GLP 70

Query: 85  TENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
              E L  R++  +   +       ++   +++ V+Q     S     + AA  AL+ S 
Sbjct: 71  GCAEKLQERLLRNTCESVVLAILHPRSGVNIVLQVIQ--DSGSLLSCCINAACMALVDSA 128

Query: 143 LPFEGPVVGAQVD-YINGQYVLNP-RLDEDQGSLDLFVS--GTQDAVLMVELEANQLSED 198
           +P +  V          G+ VL+P    E + S  L  +    ++ V+    +     E 
Sbjct: 129 VPMKCLVSAVTCAVMEEGRIVLDPDSKQEKESSAVLTFAFDSRENNVVTCSTKGCYTPEK 188


>gi|167947925|ref|ZP_02534999.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 99

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/96 (56%), Positives = 70/96 (72%)

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
           MD+KI GI++ IM +AL+QAK GRLHIL+EM++V+S  R ++ E  PR+  + I PD+IR
Sbjct: 1   MDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRIIEIKINPDKIR 60

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           +VIG GG  IRGI E TGA V+I DDG VKI S   
Sbjct: 61  DVIGKGGVTIRGITEATGATVDITDDGIVKIFSVEQ 96


>gi|153854920|ref|ZP_01996143.1| hypothetical protein DORLON_02149 [Dorea longicatena DSM 13814]
 gi|149752622|gb|EDM62553.1| hypothetical protein DORLON_02149 [Dorea longicatena DSM 13814]
          Length = 361

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G 
Sbjct: 266 PWANAAEDYAVGTVITGKVARMTDFGAFVELAPGVDALLHVSQISRAHVDKPSDVLSVGQ 325

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQN 693
            +  K++D ++   KI LSMK ++Q 
Sbjct: 326 EITAKIVDLNEAEKKISLSMKALEQP 351



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           +++    G+ I  ++ +   + N        I       +    E  + +     V    
Sbjct: 144 KDLSKYQGQEIEFVISEFNPRRN------RVIGDRRQLLVAERAEKQKELFAKINVGDRM 197

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAF+   G  DGL+HIS++S  RV     V + GD V V + D  D  KI
Sbjct: 198 EGTVKNVTDFGAFIDL-GGVDGLLHISEMSWGRVENPKKVFQVGDKVEVMIKDIHDT-KI 255

Query: 684 KLSMKVVDQNTG 695
            LS+K  + N  
Sbjct: 256 ALSLKFPETNPW 267



 Score = 41.8 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  ++ + E     + VV  G
Sbjct: 8   QMLEESFKTIRNGEVVDGTVIDVKPDEIILNIGYKADGIITRNEYTNEANVDLTTVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K+L   D  G++ L+ K +    G
Sbjct: 68  DKMSAKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|126643235|ref|YP_001086219.1| putative RNA binding protein [Acinetobacter baumannii ATCC 17978]
 gi|126389119|gb|ABO13617.1| putative RNA binding protein [Acinetobacter baumannii ATCC 17978]
          Length = 561

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 357 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 411

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 412 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 470

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 471 VQVRVMQVDVERNRVNLSMRA 491


>gi|116333182|ref|YP_794709.1| hypothetical protein LVIS_0520 [Lactobacillus brevis ATCC 367]
 gi|116098529|gb|ABJ63678.1| RNA binding protein (S1 domain) [Lactobacillus brevis ATCC 367]
          Length = 181

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHIS++S   V    DV+  GD V VK+L  
Sbjct: 4   EVGAKVTGKVSGITNFGAFVDLGDHKTGLVHISEISDGYVKDIHDVLSVGDEVTVKVLTV 63

Query: 678 DDRGKIKLS-MKVVDQNTGK 696
            D GKI LS  K  D    +
Sbjct: 64  GDDGKIGLSIRKATDHPASE 83


>gi|17546342|ref|NP_519744.1| transcription accessory protein [Ralstonia solanacearum GMI1000]
 gi|17428639|emb|CAD15325.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 779

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 14/172 (8%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI-RGIVEQTGAK------VN 586
           + S V  E+   +     R+         I +V+G    +      E T  K      V+
Sbjct: 577 DRSSVHPEAYPVVQRILERI------KKGIGDVLGNREALRGLTAQEFTDDKFGLPTVVD 630

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +              A  +         +   + +G V  V  FGAF+     +DGL
Sbjct: 631 ILGELEKPGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGL 690

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+    P
Sbjct: 691 VHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLTDEPGQVP 742


>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex exonuclease RRP46-like [Nomascus
           leucogenys]
          Length = 235

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  + +  LL R  GS+ F++GDT  +  V  G  E +          +  F    N  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVK--------VSKEIF----NKA 74

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++  P   E    RL R     V+  T     ++ +V ++    GS     +
Sbjct: 75  TLEVILRPKIRLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
             + +AL+DAGVP+     G+   L  DG   ++L   S  E     +
Sbjct: 135 NAACMALVDAGVPMRALFCGVTCALDSDGT--LVLDPTSKQEKEARAV 180



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K  ++ F    L V  + +     ++PG   +     
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI----RLPGVAEKSR--- 94

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
                   R+I  +   +        T + + +       S     + AA  AL+ +G+P
Sbjct: 95  -------ERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
                 G       +G  VL+P   +++
Sbjct: 148 MRALFCGVTCALDSDGTLVLDPTSKQEK 175


>gi|310828094|ref|YP_003960451.1| hypothetical protein ELI_2506 [Eubacterium limosum KIST612]
 gi|308739828|gb|ADO37488.1| hypothetical protein ELI_2506 [Eubacterium limosum KIST612]
          Length = 730

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+D  +K++  +L E               +V+   + ++  V+DFGAF       +GL+
Sbjct: 563 DEDKKIKLSVKALKE-----RPWEEFVKNYKVDDEVEVKITNVLDFGAFAEILPGVEGLI 617

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           H+S++S +RV   + V+K GD V VK++  + ++ KI LS+K   +   +P
Sbjct: 618 HVSEISYDRVESVAAVLKPGDVVKVKIIGINTEKEKISLSIKATLEAPERP 668



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 4/154 (2%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P  +        + ++IG   K I  I++    +        V +      +  A 
Sbjct: 434 DIFMPASQYHVRYVKDLESLIGEDVKGI--IIDYNAKRRRAILSQKVILEKEIKEKQAAL 491

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE      D  EV  I  G V  + +FG FV      DG VH S L+ ER  +  D+V++
Sbjct: 492 REAKEKRFDELEVGDIVGGTVKTITNFGIFVDL-NGIDGFVHRSDLTWERANEPKDLVEK 550

Query: 667 GDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPIV 699
           G  +  K++   D+  KIKLS+K + +   +  V
Sbjct: 551 GQEIEAKVISKNDEDKKIKLSVKALKERPWEEFV 584



 Score = 39.1 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 2/135 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           PD I   +    +  +   EQT   V   +    + A+            I         
Sbjct: 264 PDWIVKEVTESMEENKLEQEQTQEVVQETEAAKAQTANEIADANFDFAAEIEESLKPIRK 323

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
               +G+V+ + +    ++     D ++  +  + +   + +D+VK GD V   + D  D
Sbjct: 324 GAPVEGEVIHIDNDEVILNIGYKADAVIKKNDFTWKHDEELADLVKLGDKVNAIVTDLND 383

Query: 679 DRGKIKLS-MKVVDQ 692
             G +KLS +K  +Q
Sbjct: 384 GSGSVKLSKIKYDNQ 398


>gi|307332556|ref|ZP_07611607.1| Tex-like protein-like protein [Streptomyces violaceusniger Tu 4113]
 gi|306881791|gb|EFN12926.1| Tex-like protein-like protein [Streptomyces violaceusniger Tu 4113]
          Length = 773

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  
Sbjct: 652 MILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVRVKVLDIDIP 711

Query: 680 RGKIKLSMKVVDQ 692
           R +I L++++ D+
Sbjct: 712 RKRISLTLRLDDE 724


>gi|182624039|ref|ZP_02951827.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177910932|gb|EDT73286.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 720

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|77919478|ref|YP_357293.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
 gi|77545561|gb|ABA89123.1| SSU ribosomal protein S1P [Pelobacter carbinolicus DSM 2380]
          Length = 573

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYK 624
           +     + + + E    K+   +     I  S    +E  RE +R  T   + E  ++  
Sbjct: 151 LRPVRNLDKLLGETFEFKIIKLNKRRGNIVLSRRVLLEEQRESLRQDTLETLAEDQEVV- 209

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAF+   G  DGL+HI+ +S  RVA  SDV+  GD + VK+L FD ++ ++
Sbjct: 210 GVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRVAHPSDVLAVGDKIKVKVLKFDREKERV 268

Query: 684 KLSMKVVDQNTG 695
            L +K +  +  
Sbjct: 269 SLGLKQLTADPW 280



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-----VKIASSSLAEIEAAREMIRSITD 615
           + +  +I +        ++     +NI DD       V +++  ++      E       
Sbjct: 311 EGVEGLIHVSEMSWTKRIKHPSKILNIGDDIESVVLAVDVSNRRISLGLKQIERNPWEVI 370

Query: 616 VPEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
             +     I +GQV  + DFG FV      DGLVHIS LS  +R+   S++ K+GD V  
Sbjct: 371 GEKFPIGTIIEGQVKNITDFGIFVGVDDGIDGLVHISDLSWTKRIKHPSELFKKGDVVKA 430

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            +L+ D +  +  L +K +  +  + I 
Sbjct: 431 VVLNIDQENERFSLGIKQLASDPWQTIA 458



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   S+ +         G+VV + D+GAFV      +GL+H+S++S  +R+   S ++  
Sbjct: 278 DPWLSVAEKYPTGNRVSGKVVSLTDYGAFVELDEGVEGLIHVSEMSWTKRIKHPSKILNI 337

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD +   +L  D    +I L +K +++N  + I
Sbjct: 338 GDDIESVVLAVDVSNRRISLGLKQIERNPWEVI 370



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +  ++I        +  G+V  V DFG F+      +GL+H+S++S E+V    D  K
Sbjct: 450 ASDPWQTIATRYAPGTMISGKVTSVTDFGIFLEVEEGIEGLIHVSEISKEKVDSPKDFAK 509

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
            GD +   +L  D +  KI LS+K V
Sbjct: 510 VGDNLEAVVLHVDTEDKKIALSIKHV 535


>gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
 gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
          Length = 488

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFG 634
            + ++  AK+   D     +  S  A +E  +   R S  +     ++ KG V  +++FG
Sbjct: 166 YLGQEIEAKILELDKNRNNVVLSRRALLEETQSASRTSFLNNLAKGQVRKGVVSSIVNFG 225

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ D +R ++ LS+K   ++
Sbjct: 226 AFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKATQED 284

Query: 694 TGK 696
             +
Sbjct: 285 PWQ 287



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FGAFV      +GLVHIS+LS + V     VV  G
Sbjct: 284 DPWQVFARTHAIGQVAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVG 343

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D V+VK++D D +R +I LS+K  ++
Sbjct: 344 DEVFVKVIDIDLERRRISLSLKQANE 369



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS +     ++VV  GDTV   +L   D 
Sbjct: 39  DLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLILSKKRAQ 110


>gi|319891461|ref|YP_004148336.1| RNA binding protein, contains ribosomal protein S1 domain protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161157|gb|ADV04700.1| RNA binding protein, contains ribosomal protein S1 domain protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465369|gb|ADX77522.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius
           ED99]
          Length = 125

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 42/79 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    D +  GD V VK+L  
Sbjct: 4   EVGSKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLTVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
            D GKI LS+K   +   K
Sbjct: 64  ADDGKISLSIKKAKERPRK 82


>gi|167630001|ref|YP_001680500.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium
           modesticaldum Ice1]
 gi|167592741|gb|ABZ84489.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium
           modesticaldum Ice1]
          Length = 665

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      + S  +   E  +E      +  E  +  +G V ++ DFGAFV   G  D
Sbjct: 457 MEIDTRRNNAVLSQKVVLEEEYKEARAKTWEEIEEGQTRRGTVRRLTDFGAFVDL-GGVD 515

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  R+   S+VVKEGD + V +L  D ++ K+ L +K V  N  
Sbjct: 516 GLLHVSEMSWGRIKHPSEVVKEGDVIDVYVLKVDREKEKVSLGLKQVLPNPW 567



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++++   +  I    VV++  FGAF       DGL+HISQL+  RV K  DVV  GD
Sbjct: 566 PWNTVSEKYPIGAIITVTVVRLTPFGAFAELEPGVDGLIHISQLADRRVNKPEDVVSVGD 625

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            V VK+LD  +   +I LS++ V ++  
Sbjct: 626 QVKVKVLDIKEAERRISLSIRAVKEDEA 653


>gi|171463929|ref|YP_001798042.1| ribosomal protein S1 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193467|gb|ACB44428.1| ribosomal protein S1 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 557

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G T +  D      S   +  AL+QA+     +  ++   L+     +  F P   +   
Sbjct: 80  GDTILSRDKAKRLASWMNLEKALEQAEIVTGTVTGKVKGGLTVMVNGIRAFLPGSLVDTR 139

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P   I++     GK +   V +   K N      V ++  ++ E     E  + ++++ E
Sbjct: 140 P---IKDTSPYEGKTMEFKVIKLDRKRN-----NVVLSRRAVVEASQGEERAKLMSNLKE 191

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+++  G  V  K+L FD
Sbjct: 192 GA-VVTGLVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEMLTVGQEVTAKILKFD 249

Query: 679 -DRGKIKLSMKVVDQNTG 695
            ++ ++ L +K +  +  
Sbjct: 250 QEKNRVSLGVKQLGDDPW 267



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +           +   + +    G +  + DFG F+   G  D
Sbjct: 333 LDIDEDKRRISLGIKQCKAN----PWEEFSRAQQKDDKLTGAIKSITDFGVFIGLPGGID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K +  + 
Sbjct: 389 GLVHLSDLSWNEPG--EEAVKKYKKGDEVEATVLAIDVEKERISLGIKQLSGDP 440



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I      N    G+V  + D+GAFV      +GLVH+S++    +    S     
Sbjct: 265 DPWVGIARRYPPNTRLFGKVTNLTDYGAFVEIESGIEGLVHVSEMDWTNKNVAPSKATAL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V V +LD D D+ +I L +K    N  + 
Sbjct: 325 GTEVEVMVLDIDEDKRRISLGIKQCKANPWEE 356



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T V +   +  G V  V   GA +H     +  +  S++ST+RV    +V+KEG
Sbjct: 439 DPFNNYTSVSDKGSLVTGTVKAVDAKGATIHLADEVEAYLRASEISTDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D+V   +++ D + + I LS+K  D
Sbjct: 499 DSVTAMIINIDRKSRVINLSIKAKD 523


>gi|262373677|ref|ZP_06066955.1| transcriptional accessory protein [Acinetobacter junii SH205]
 gi|262311430|gb|EEY92516.1| transcriptional accessory protein [Acinetobacter junii SH205]
          Length = 785

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 20/148 (13%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+  +DD   +      LAE+E               RE 
Sbjct: 578 VKDIIGNT-----EIIRQVKAEEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 632

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  ++ + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 633 ITEVSQLTEGMQL-EGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPHKVVKPGQI 691

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           V V+++  D +R ++ LSM+       K
Sbjct: 692 VQVRVMQVDVERNRVNLSMRAEGSAPAK 719


>gi|260584479|ref|ZP_05852226.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
 gi|260157997|gb|EEW93066.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
          Length = 163

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 46/82 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V  + +FGAFV     + GLVHIS++S   +    DV+  GD V VK+++ 
Sbjct: 4   EVGNILPGKVTGITNFGAFVDLGNRKTGLVHISEVSNSYIKDIKDVLTVGDEVQVKVMEI 63

Query: 678 DDRGKIKLSMKVVDQNTGKPIV 699
              GK+ LS++    ++ +  V
Sbjct: 64  SGDGKVSLSIRRASADSSEETV 85


>gi|229822883|ref|ZP_04448953.1| hypothetical protein GCWU000282_00173 [Catonella morbi ATCC 51271]
 gi|229787696|gb|EEP23810.1| hypothetical protein GCWU000282_00173 [Catonella morbi ATCC 51271]
          Length = 417

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P   + +   + ++  +G   + +  ++ +   K     +  + ++   +AE E 
Sbjct: 138 LRAFVPASMVDSFYVEDLKVYVG---QTLDFVIVELDEK-----ENRLILSHKEIAERER 189

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   ++ ++ E + I +G V ++ +FGAFV+  G  DGLVH+S++S   + K  DV+ 
Sbjct: 190 AEKRAAALANLVEGS-IVEGTVARLTNFGAFVNL-GDVDGLVHLSRISHSHIRKPGDVLN 247

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V VK+L  + + G++ LS+K   +     I
Sbjct: 248 VGDKVNVKVLSVNPEDGRVSLSIKDTLEGPWDNI 281



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I +      + KG V ++ DFGAFV      +GLVHISQ+S E +A   + ++EG 
Sbjct: 277 PWDNIQEKAGEGTVLKGTVKRLTDFGAFVEVLPGVEGLVHISQISHEHIATPGEKLQEGQ 336

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V VK+L  + +  ++ LS+K + +   +P
Sbjct: 337 EVDVKVLSVNPEDQRLSLSIKALLERPARP 366



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQL 652
           +  +   +     E         +   + KG V+   D    V     G  +G++   +L
Sbjct: 1   MTETVENQQLQTMEDALDSVLDIKPGDVVKGDVLAFEDNQVRVSIKESGGLEGVIPRREL 60

Query: 653 STERVAKTSDVVKEGDTVWVKLLD--FD-DRGKIKLSMKVVD 691
           S +   + ++VV  GD V V +L    D + G   LS K ++
Sbjct: 61  SAKPFNEFTEVVNIGDEVEVVVLKPIRDKENGNFLLSRKRLE 102


>gi|91974674|ref|YP_567333.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris BisB5]
 gi|91681130|gb|ABE37432.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris BisB5]
          Length = 565

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 231 DIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 279



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVDVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           R       +   V    +G+V    +FG F+   G  DG+VH+S L  ++   +  D  K
Sbjct: 360 RNPWEVFVEKYPVGSTVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWKQPGEQVIDNFK 419

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K ++ + 
Sbjct: 420 KGDMVKAVVLDVDVEKERISLGVKQLEGDP 449



 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 95/579 (16%), Positives = 179/579 (30%), Gaps = 89/579 (15%)

Query: 164 NPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK--- 220
           NP  D+    LD   +G              L E  V+  I+    +   VI+   K   
Sbjct: 8   NPTRDDFAAMLDESFAG------------GNLQESSVIKGIVVAIEKDMAVIDVGLKTEG 55

Query: 221 ---LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS 277
              L +     P            E     I+  L  +    +K  R +    L      
Sbjct: 56  RVALREFAG--PGRESELKVGDTVEVFLDRIENALGEAVLSRDKARREESWGKL------ 107

Query: 278 YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHG 337
               +    NE     +F  ++     TV LD  V    R    +R I     +    + 
Sbjct: 108 ---EKAFQGNEKVFGVIFNQVKGG--FTVDLDGAVAFLPRSQVDIRPI---RDVAPLMNN 159

Query: 338 SSLFI-------RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM--MHYNFLPC-ATGE 387
           S  F        RG+        L     EQ  + +   +    +  +  N     A  +
Sbjct: 160 SQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVD 219

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
           +  +        G   +   A   V   T        +  +I + +  +   ++      
Sbjct: 220 LGGID-------GLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISL--GMKQ 270

Query: 448 LMD---AGVPISKPVAGIAMGLVKDGDDFIILSDI-SGDE--DHLGHMDFKVAGTDSGIT 501
           L+D    G+    P+     G V +  D+    ++  G E   H+  M +       G  
Sbjct: 271 LLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPG-- 328

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR---VEIMAI 558
                 KI   S+ + V  L+     R  I   + + +        E  P    VE    
Sbjct: 329 ------KIVSTSQEVDVQVLEVDSVKR-RISLGLKQTMRNPWEVFVEKYPVGSTVEGEVK 381

Query: 559 PPDQIRNVIGMGGKV--IRGIVEQTGAK-----VNIDDDGTVKIASSSLAEIEAAR---- 607
              +    +G+ G V  +  + +    +     ++    G +  A     ++E  R    
Sbjct: 382 NKTEFGLFLGLDGDVDGMVHLSDLDWKQPGEQVIDNFKKGDMVKAVVLDVDVEKERISLG 441

Query: 608 -----EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTS 661
                    +     +   I   +V+ V + G  V   G      +  S+L+ +R  + S
Sbjct: 442 VKQLEGDPFAEPGDVKKGAIVTCEVLDVKESGIDVQIVGTDFATFIKRSELARDRNDQRS 501

Query: 662 DVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D    G+ V  +++ FD +  K+++S+K ++    K  +
Sbjct: 502 DRFAVGEKVDARVIQFDKKARKVQVSIKALEVAEEKEAI 540


>gi|172058299|ref|YP_001814759.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990820|gb|ACB61742.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 130

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E +++  G+V  + +FGAFV       GLVHIS++S + V   +D VK GD V VK+LD 
Sbjct: 5   EKDQVVTGKVTGIQNFGAFVALDEQTQGLVHISEISHDYVKDINDYVKVGDEVTVKVLDI 64

Query: 678 DD-RGKIKLSMKVVDQNTGKP 697
           D+   K+KLS+K   +   + 
Sbjct: 65  DEANKKMKLSIKATQEAPKRE 85


>gi|15923498|ref|NP_371032.1| hypothetical protein SAV0508 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926185|ref|NP_373718.1| hypothetical protein SA0466 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282192|ref|NP_645280.1| hypothetical protein MW0463 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485372|ref|YP_042593.1| hypothetical protein SAS0465 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651384|ref|YP_185440.1| hypothetical protein SACOL0552 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160186|ref|YP_493195.1| hypothetical protein SAUSA300_0486 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194268|ref|YP_499060.1| hypothetical protein SAOUHSC_00483 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266967|ref|YP_001245910.1| hypothetical protein SaurJH9_0530 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393013|ref|YP_001315688.1| hypothetical protein SaurJH1_0543 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220682|ref|YP_001331504.1| hypothetical protein NWMN_0470 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978836|ref|YP_001441095.1| hypothetical protein SAHV_0505 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161508748|ref|YP_001574407.1| hypothetical protein USA300HOU_0502 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142300|ref|ZP_03566793.1| hypothetical protein SauraJ_11807 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315223|ref|ZP_04838436.1| hypothetical protein SauraC_03490 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253730976|ref|ZP_04865141.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735243|ref|ZP_04869408.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005301|ref|ZP_05143902.2| hypothetical protein SauraM_02500 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424620|ref|ZP_05601048.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427286|ref|ZP_05603687.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429923|ref|ZP_05606309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432625|ref|ZP_05608987.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435529|ref|ZP_05611579.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257794251|ref|ZP_05643230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|258407232|ref|ZP_05680377.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9763]
 gi|258420801|ref|ZP_05683737.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258424456|ref|ZP_05687335.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258429625|ref|ZP_05688299.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258446105|ref|ZP_05694266.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A6300]
 gi|258448013|ref|ZP_05696143.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|258452811|ref|ZP_05700806.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|258453841|ref|ZP_05701814.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5937]
 gi|262049993|ref|ZP_06022852.1| hypothetical protein SAD30_0221 [Staphylococcus aureus D30]
 gi|262052535|ref|ZP_06024732.1| hypothetical protein SA930_1956 [Staphylococcus aureus 930918-3]
 gi|269202128|ref|YP_003281397.1| hypothetical protein SAAV_0455 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895116|ref|ZP_06303336.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|282903094|ref|ZP_06310986.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282904883|ref|ZP_06312743.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282907830|ref|ZP_06315668.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910146|ref|ZP_06317952.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913336|ref|ZP_06321127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282915826|ref|ZP_06323594.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918289|ref|ZP_06326029.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282923040|ref|ZP_06330726.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282925583|ref|ZP_06333236.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|283768943|ref|ZP_06341852.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957298|ref|ZP_06374756.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284023517|ref|ZP_06377915.1| hypothetical protein Saura13_02949 [Staphylococcus aureus subsp.
           aureus 132]
 gi|293500385|ref|ZP_06666237.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509324|ref|ZP_06668040.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515912|ref|ZP_06670602.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294850368|ref|ZP_06791101.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|295407398|ref|ZP_06817195.1| hypothetical protein SMAG_02570 [Staphylococcus aureus A8819]
 gi|296276161|ref|ZP_06858668.1| hypothetical protein SauraMR_07419 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207389|ref|ZP_06923828.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246478|ref|ZP_06930318.1| hypothetical protein SLAG_02553 [Staphylococcus aureus A8796]
 gi|297591581|ref|ZP_06950218.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|300910348|ref|ZP_07127801.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380526|ref|ZP_07363202.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13700398|dbj|BAB41696.1| SA0466 [Staphylococcus aureus subsp. aureus N315]
 gi|14246276|dbj|BAB56670.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21203628|dbj|BAB94328.1| MW0463 [Staphylococcus aureus subsp. aureus MW2]
 gi|49243815|emb|CAG42240.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285570|gb|AAW37664.1| general stress protein 13 [Staphylococcus aureus subsp. aureus COL]
 gi|87126160|gb|ABD20674.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87201826|gb|ABD29636.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740036|gb|ABQ48334.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945465|gb|ABR51401.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373482|dbj|BAF66742.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156720971|dbj|BAF77388.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367557|gb|ABX28528.1| hypothetical protein USA300HOU_0502 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725288|gb|EES94017.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726803|gb|EES95532.1| S1 family RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257272647|gb|EEV04767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275937|gb|EEV07405.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279439|gb|EEV10034.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282490|gb|EEV12623.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285166|gb|EEV15283.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257788223|gb|EEV26563.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|257841190|gb|EEV65639.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9763]
 gi|257843193|gb|EEV67606.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257845325|gb|EEV69360.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257849684|gb|EEV73651.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257855082|gb|EEV78024.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A6300]
 gi|257858703|gb|EEV81576.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|257859497|gb|EEV82350.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|257864012|gb|EEV86767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5937]
 gi|259159582|gb|EEW44629.1| hypothetical protein SA930_1956 [Staphylococcus aureus 930918-3]
 gi|259161928|gb|EEW46511.1| hypothetical protein SAD30_0221 [Staphylococcus aureus D30]
 gi|262074418|gb|ACY10391.1| hypothetical protein SAAV_0455 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940079|emb|CBI48455.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314559|gb|EFB44946.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317855|gb|EFB48224.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282320317|gb|EFB50659.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322807|gb|EFB53127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325994|gb|EFB56300.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282328306|gb|EFB58581.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282332000|gb|EFB61509.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282592487|gb|EFB97499.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|282596520|gb|EFC01480.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282762534|gb|EFC02674.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|283461124|gb|EFC08210.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283469800|emb|CAQ49011.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283791222|gb|EFC30032.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816207|gb|ADC36694.1| RNA binding protein, contains ribosomal protein S1 domain
           [Staphylococcus aureus 04-02981]
 gi|290921320|gb|EFD98378.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096345|gb|EFE26605.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467869|gb|EFF10379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|294822792|gb|EFG39228.1| S1 RNA binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|294967755|gb|EFG43787.1| hypothetical protein SMAG_02570 [Staphylococcus aureus A8819]
 gi|296887952|gb|EFH26846.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176665|gb|EFH35927.1| hypothetical protein SLAG_02553 [Staphylococcus aureus A8796]
 gi|297575450|gb|EFH94167.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|298693838|gb|ADI97060.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300888337|gb|EFK83524.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302332221|gb|ADL22414.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302750399|gb|ADL64576.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340930|gb|EFM06854.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436402|gb|ADQ75473.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829003|emb|CBX33845.1| general stress protein 13 (GSP13) [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128636|gb|EFT84639.1| hypothetical protein CGSSa03_01645 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193870|gb|EFU24264.1| hypothetical protein CGSSa00_12592 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315196191|gb|EFU26547.1| hypothetical protein CGSSa01_12543 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320144182|gb|EFW35950.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323438740|gb|EGA96480.1| hypothetical protein SAO11_2433 [Staphylococcus aureus O11]
 gi|323442048|gb|EGA99683.1| hypothetical protein SAO46_2007 [Staphylococcus aureus O46]
 gi|329313227|gb|AEB87640.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725063|gb|EGG61558.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729775|gb|EGG66172.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21189]
 gi|329731089|gb|EGG67461.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 133

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    + +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|256043981|ref|ZP_05446896.1| 30S ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1]
          Length = 503

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 28  SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 86

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 87  VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 146

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 147 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 205

Query: 691 DQNTG 695
           + +  
Sbjct: 206 ESDPW 210



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 140 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 189

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 190 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 249

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 250 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 309

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 310 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 369

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 370 ERISLGIKQL 379



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 208 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 267

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 268 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 297



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       D  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 398 VVTCEVTAVTDGGLEVRLVDHDLDSFIRRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 457

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 458 TRKLQVSIKALEIAEEKEAV 477


>gi|253576861|ref|ZP_04854186.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843728|gb|EES71751.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 156

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 44/79 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKIGDMVTVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           D  GKI LS+K       +
Sbjct: 64  DKDGKIGLSIKQAVDKPAE 82


>gi|296121873|ref|YP_003629651.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776]
 gi|296014213|gb|ADG67452.1| ribosomal protein S1 [Planctomyces limnophilus DSM 3776]
          Length = 597

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   +  ++    G+ I  ++ +      ID+     + S      E   +M +++   
Sbjct: 162 QVDIRRPHDLDSYKGRSIECLILK------IDEQRRNIVVSRRRLIEEQREKMKKTLLAD 215

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  +I KG V  + DFGAFV   G  DGL+HI+ +S  R+   S++VK  D V V +L 
Sbjct: 216 LKEGEIRKGTVKNIADFGAFVDL-GGIDGLLHITDMSWGRIGHPSEMVKIDDEVEVMILH 274

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D DR KI L +K  D++    +
Sbjct: 275 IDRDREKIALGLKQKDKSPWDDV 297



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 83/205 (40%), Gaps = 22/205 (10%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           ++ + + +    R R  I   + +        +    P    +      + +      + 
Sbjct: 265 DDEVEVMILHIDRDREKIALGLKQKDKSPWDDVETKYPVGTKIKGDVVNVMSYGAFVKLE 324

Query: 569 MGGKVIRGIVEQTGAK--------VNIDDDGTVKIASSSLA-------EIEAAREMIRSI 613
            G + +  I E +  K        VN  D+  V + + +           +A       +
Sbjct: 325 DGIEGLVHISEMSWTKRVNHPSELVNPGDEVEVVVLNINKDKQEISLGMKQAMPNPWDQV 384

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWV 672
           +       I +G V  + ++GAF+      DGL+H+S +S  R ++  ++++K+GD +  
Sbjct: 385 SAKYPPGTIVEGTVRNLTNYGAFIELEEGVDGLLHVSDMSWTRKISHANEMLKKGDLLKC 444

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           +++  D +R +I L +K +D++  +
Sbjct: 445 QVISVDEERKRIALGLKQLDEDPWE 469



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                I    +  ++  G+V K+ +FG FV      +GL+H+S+L+ +++      VK G
Sbjct: 467 PWENRIPTKYQPGEVVTGKVTKITNFGVFVELESELEGLLHVSELADQKIENPETFVKVG 526

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           D + V++L  D    KI LS K   +   + 
Sbjct: 527 DELEVRILRIDPVDRKIGLSRKTSGELPTEE 557


>gi|82750215|ref|YP_415956.1| hypothetical protein SAB0457 [Staphylococcus aureus RF122]
 gi|82655746|emb|CAI80145.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           RF122]
          Length = 133

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG++  +  FGAFV     + GLVHIS+++   V    + +  GD V VK+L  
Sbjct: 4   EVGNKLKGKITGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|289523537|ref|ZP_06440391.1| general stress protein 13 [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503229|gb|EFD24393.1| general stress protein 13 [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 155

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 47/82 (57%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + +    +VN++ K  V ++  +GAFV     + G++HIS++S   V K  DV+  G 
Sbjct: 15  NEQEVITSAKVNEVVKCVVERITPYGAFVKIQNGQRGMIHISEISQGYVKKVEDVLSLGQ 74

Query: 669 TVWVKLLDFDDRGKIKLSMKVV 690
            V  K++  D+RG+I LS+K +
Sbjct: 75  EVEAKVIKIDERGRIDLSLKAL 96


>gi|313906129|ref|ZP_07839478.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
 gi|313469016|gb|EFR64369.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
          Length = 235

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 1/107 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            +D++    I S+       A E  ++  +  E+  +  G+V  +  +GAF+       G
Sbjct: 92  EVDEEKGRLILSAVELLRAKADEEKKAKIEAIEIGSVMDGKVESIQSYGAFIDLGDGLSG 151

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           LVHISQ+S +RV    DV+K G  V VK++   D GK+ LSMK +++
Sbjct: 152 LVHISQISNKRVKSVEDVLKAGQDVKVKVIRIKD-GKLSLSMKALEE 197


>gi|224475651|ref|YP_002633257.1| hypothetical protein Sca_0159 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420258|emb|CAL27072.1| putative RNA binding protein with S1 domain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 136

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++ + V    + +  GD V VK+L  
Sbjct: 4   EVGSKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADKYVENVEEHLSVGDEVEVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
            D GKI LS+K       +
Sbjct: 64  ADDGKISLSIKKAKDRPKR 82


>gi|153007374|ref|YP_001368589.1| 30S ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188]
 gi|151559262|gb|ABS12760.1| ribosomal protein S1 [Ochrobactrum anthropi ATCC 49188]
          Length = 566

 Score = 90.7 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 91  SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 150 VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 313 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDIDK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 331 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 360



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       +  +  S LS +R  +  +    G  +  +++ FD +
Sbjct: 461 VVTCEVTAVTDGGLEVRLVDHDLESFIKRSDLSRDRDEQRPERFTVGQKLDARVIAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 521 TRKLQVSIKALEIAEEKEAV 540


>gi|154497962|ref|ZP_02036340.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC
           29799]
 gi|150272952|gb|EDN00109.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC
           29799]
          Length = 649

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +  E  K Y G V  +  +GAFV   G  DG+VHIS+LS  R+   S+VVK GDTV V 
Sbjct: 472 WENIEEGKKYTGTVKSLTSYGAFVDI-GGVDGMVHISELSWSRIKHPSEVVKVGDTVEVY 530

Query: 674 LLDFD-DRGKIKLSMKVVDQNTG 695
           ++ FD ++ KI L MK   Q+  
Sbjct: 531 VISFDKEKKKISLGMKDRSQDPW 553



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + +++     T    V      +VVK+M FGAF       DGL+HISQ++  R+ K  
Sbjct: 545 MKDRSQDPWTVFTTKYSVGDTANVKVVKLMTFGAFAEIVPGVDGLIHISQIADHRIEKPG 604

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           DV+ EG  V VK+ D D DR K+ LS++ + +   +
Sbjct: 605 DVLSEGQMVDVKITDIDMDRKKVSLSIRALLEGGEE 640



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 7/221 (3%)

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQ-MDMKIGGISENIMVMALQQAKRGRLHILN 533
            L+ +S         D  V       T ++  D       +         AK   + ++ 
Sbjct: 159 PLTLVSQTTAARKSWDLCVEKAKKECTNLKVFDTICSATCKRQEAAQALAAKSDAMIVIG 218

Query: 534 EMSKVLSESRLQL-GEFTPRVEIMAIPPD-QIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           +     +    +L     P+V  +    D +  N+ G     I       G    I  + 
Sbjct: 219 DRKSSNTRRLAELCAALCPQVLWIERAEDLEPSNLYGKASIGITAGASTPG---WIIKEV 275

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
             K++   +   E+  E++          +   G V  +     +V       G + +S+
Sbjct: 276 YNKMSDEIMEIEESFAELLEKSIKTLNTGEKVTGVVTGITPTEIYVDLGTKHAGYIPVSE 335

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           L+ +   K  D+V  GD +   ++   D  G + LS K +D
Sbjct: 336 LTDDPTVKVEDLVHVGDEIETYVMRVNDQEGVVTLSKKRLD 376


>gi|291547263|emb|CBL20371.1| Transcriptional accessory protein [Ruminococcus sp. SR1/5]
          Length = 718

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 13/131 (9%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVN 620
           ++   + +G   +R IV++             K A     E+               +  
Sbjct: 597 KLAKELEIGEPTLRDIVKELE-----------KPARDPRDEMPKPILRTDVLDMKDLKEG 645

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + KG V  V+DFGAFV     +DGLVHIS++S + +    + V  GD V V++L  D  
Sbjct: 646 MVLKGTVRNVIDFGAFVDIGVHQDGLVHISEMSEKFIKHPLEAVSVGDIVDVRVLGVDMK 705

Query: 680 RGKIKLSMKVV 690
           + +I LSMK +
Sbjct: 706 KKRISLSMKGI 716


>gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 459

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 558 IPPDQIRNVIG-----MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE-MIR 611
           +P  Q+  + G         + R I  +   K+   +    ++  S    I+  R+ M  
Sbjct: 160 VPASQVTEIRGGDDSSKQADMARLIGSKLSLKIIEINRHRNRLILSERQAIQERRDVMKE 219

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            + +     +  +G+V  + DFGAFV   GA DGLVH+S+LS  RV   S+V+K G+ V 
Sbjct: 220 RLIEELTEGETRRGRVTSITDFGAFVDIGGA-DGLVHLSELSWSRVKHPSEVLKVGEEVD 278

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTG 695
           V +L  + +  KI LS+K       
Sbjct: 279 VYVLGINAEEKKIALSIKRTQPEPW 303



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    +    EV ++  G V ++ +FGAF       +GL+H+S+LS +R+     VV EG
Sbjct: 301 EPWSRVAMKYEVGQLVLGTVTQLANFGAFARIEDGIEGLIHVSELSEQRIGHPRQVVSEG 360

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             + ++++  D  R ++ LS++   + T   + 
Sbjct: 361 QDLILRIIRIDPARRRMGLSLRRALEATDDEVA 393


>gi|229845697|ref|ZP_04465820.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
 gi|229811383|gb|EEP47089.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
          Length = 770

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVSRKRIALTMR-LDESAVK 727


>gi|144897525|emb|CAM74389.1| Transcriptional accessory protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 779

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 5/140 (3%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           I +V  + G       +    +  I D   +              A+ +         + 
Sbjct: 597 IGDVTFLRGLKAAQFTDDRFGEPTIKDILKELEKPGRDPRPEFKTASFKDGVETMQDLQP 656

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I +G V  V +FGAFV     +DGLVH+S L+   V    +VVK GD V VK+L+ D 
Sbjct: 657 GMILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKPGDVVSVKVLEVDL 716

Query: 679 DRGKIKLSMKVVD-QNTGKP 697
            R +I L+M+  D     +P
Sbjct: 717 KRKRIALTMRKNDAPAPARP 736


>gi|317126803|ref|YP_004093085.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315471751|gb|ADU28354.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 141

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K GD V VK+L+ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEFLKVGDEVQVKVLNV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           +  GKI LS++   +    P
Sbjct: 64  ESDGKIGLSIRKAKEAPPSP 83


>gi|228993620|ref|ZP_04153527.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228999658|ref|ZP_04159234.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|229007217|ref|ZP_04164818.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228753971|gb|EEM03408.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228760020|gb|EEM08990.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|228766049|gb|EEM14696.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 138

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG+V  + D+GAFV       GLVHIS+++   V    D +K GD V VK+L  D + 
Sbjct: 34  VVKGKVTGIQDYGAFVALDQETQGLVHISEITNGYVKDIHDFLKVGDIVEVKVLSIDEEH 93

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ IV
Sbjct: 94  RKMSLSLKAAKRKQGRIIV 112


>gi|262280371|ref|ZP_06058155.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258149|gb|EEY76883.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 794

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 18/140 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           ++++IG        I+ Q  A   +DD   +      LAE+E      R   R+     +
Sbjct: 590 VKDIIGNT-----EIIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 644

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + ++         +G +  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  V
Sbjct: 645 ITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIV 704

Query: 671 WVKLLDFD-DRGKIKLSMKV 689
            V+++  D +R ++ LSM+ 
Sbjct: 705 QVRVMQVDVERNRVNLSMRA 724


>gi|23015735|ref|ZP_00055503.1| COG0539: Ribosomal protein S1 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 565

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 108/274 (39%), Gaps = 31/274 (11%)

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAG-VPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           I   I E DG  ++  V      L   G VP+ +         +K GD   +  +   D 
Sbjct: 32  ITGTIVEIDGDVAVIDV-----GLKSEGRVPLKEFATAGRATDIKAGDQVDVFVERYED- 85

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
                         +G   +  +      +  ++  + +  +R    I   +    +   
Sbjct: 86  -------------RNGEVVLSREKAKREEAWTLLEKSFEAQQRVTGVIFGRVKGGFTVDL 132

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
                F P  ++   P   I  ++G         ++++         G + ++  ++ E 
Sbjct: 133 SGAVAFLPGSQVDIRPVRDITPLLGTPQPFQILKMDRSR--------GNIVVSRRAVLEE 184

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A +    I ++ E  +I +G V  + D+GAFV   G  DGL+H++ ++ +R+   S+ 
Sbjct: 185 TRAEQRSELIENLKEG-QILEGVVKNITDYGAFVDL-GGVDGLLHVTDIAWKRINHPSEA 242

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           +  G TV V+++ F+ +  +I L +K +D +  +
Sbjct: 243 LHIGQTVKVQVIRFNSETQRISLGIKQLDADPWE 276



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V+  + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 273 DPWEGVEAKYPVDAKFSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 332

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
              V V +LD D +  +I L +K    N  +
Sbjct: 333 SQEVEVMVLDVDPQKRRISLGLKQTMNNPWE 363



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
                 D      + +G++  + +FG F+   G  DG+VH+S L       +     K+G
Sbjct: 361 PWEGFLDRFPQGTLVEGEIKNITEFGLFIGLPGDIDGMVHLSDLDWATPGEQAIQNFKKG 420

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           D V  K+LD D ++ +I L +K +  +  +  V
Sbjct: 421 DVVKAKVLDVDVEKERISLGIKQLGADPYQDAV 453


>gi|326560464|gb|EGE10846.1| 30S ribosomal protein S1 [Moraxella catarrhalis 7169]
 gi|326564205|gb|EGE14441.1| 30S ribosomal protein S1 [Moraxella catarrhalis 12P80B1]
 gi|326565804|gb|EGE15966.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC1]
 gi|326570457|gb|EGE20497.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC8]
 gi|326577136|gb|EGE27030.1| 30S ribosomal protein S1 [Moraxella catarrhalis O35E]
          Length = 557

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 87/212 (41%), Gaps = 11/212 (5%)

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            +  +      G T +  +      S   +    +  +  +  I +++    +     + 
Sbjct: 70  DVVVEAVDNGMGQTVLSREKAKREESWRALEQLHENDEIVKGVISSKVKGGFTVEIGSVR 129

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            F P   +   P  +  ++ G         +E    K++   +  V    + +    +A 
Sbjct: 130 AFLPGSLVDVRPVRETTHLEGKE-------LEFKVIKIDKQRNNIVVSRRAVMEAENSA- 181

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    +  + E  ++ +G V  + D+GAFV   G  DGL+HI+ ++ +R+   S+ V+ G
Sbjct: 182 ERDELLAKLEEGMEV-EGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEAVEVG 239

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             + VK+L FD +R ++ L +K +  +    +
Sbjct: 240 QDLKVKVLKFDRERNRVSLGLKQLGADPWTEV 271



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V  I K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWTEVEQTYPVGTITKARVTNLTDYGCFAEIAEGIEGLVHVSEMDHTNKNIHPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D +R +I L +K    N    
Sbjct: 326 GDEVNVMVLEIDGERRRISLGIKQTMPNPWAE 357



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V +V   GA +      +G + ++ ++ ER    S V+  GD V  K++  D + 
Sbjct: 454 IVKGTVKEVDAKGAVITLADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKS 513

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D+   +
Sbjct: 514 RNISLSIKAKDEADER 529



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 91/256 (35%), Gaps = 38/256 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S    +  D+K+  +  +       
Sbjct: 198 GIVKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEAVEVGQDLKVKVLKFD------- 250

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++ ++   ++ +  P   I       + +      I  G + +  +
Sbjct: 251 ---RERNRVSLGLKQLGADPWTEVEQTYPVGTITKARVTNLTDYGCFAEIAEGIEGLVHV 307

Query: 578 VEQTGAKVNID--------DDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKI 622
            E      NI         D+  V +          +                  E  + 
Sbjct: 308 SEMDHTNKNIHPSKVVQVGDEVNVMVLEIDGERRRISLGIKQTMPNPWAEFDKNHEKGQK 367

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
             G +  + DFG F+   G  DGLVH+S +S        + +    +GDTV   +L  D 
Sbjct: 368 ISGTIKSITDFGLFIGLEGGIDGLVHLSDISWT--ESGEEAIRNYSKGDTVEAVVLSVDA 425

Query: 679 DRGKIKLSMKVVDQNT 694
           +  +I L +K ++ + 
Sbjct: 426 EANRISLGIKQLNSDP 441


>gi|227824088|ref|YP_002828061.1| 30S ribosomal protein S1 [Sinorhizobium fredii NGR234]
 gi|227343090|gb|ACP27308.1| 30S ribosomal protein S1 [Sinorhizobium fredii NGR234]
          Length = 568

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E+     E R++   F        +  D     +      IR I +
Sbjct: 91  SREKARREESWMRLEVKFEAGE-RVEGIIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 150 VTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHGHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPVGKKITGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 361



 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + LS +R  +  +    G  V  ++ +F  
Sbjct: 461 VVSAEVIGVNDGGIEVKLVNHEDITSFIRRADLSRDRDEQRPERFSIGQVVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI+LS+K ++    K  V
Sbjct: 521 KDRKIQLSIKALEIAEEKEAV 541


>gi|126669095|ref|ZP_01740026.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
 gi|126626450|gb|EAZ97116.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
          Length = 455

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+   +  K +   V +   K N      V ++  ++ E E + E    +  + 
Sbjct: 27  VDVRPVRDTAHLENKELEFKVIKLDQKRN-----NVVVSRRAVLEAENSAEREALLETLT 81

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  GD + VK+L F
Sbjct: 82  EGLTI-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVGDEINVKVLKF 139

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +R ++ L +K + ++    I
Sbjct: 140 DRERNRVSLGLKQLGEDPWVEI 161



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 19/199 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           +          R  +L   +    E+ L+       ++ +          + +GG     
Sbjct: 50  LDQKRNNVVVSRRAVLEAENSAEREALLETLTEGLTIKGIVKNLTDYGAFVDLGGVDGLL 109

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--------REMIRSITDVPEVN 620
               +    ++     VN+ D+  VK+          +           +      PE +
Sbjct: 110 HITDMAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSLGLKQLGEDPWVEIKARYPEGS 169

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD 679
           K+   +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D+
Sbjct: 170 KV-TARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVGVMILDIDE 228

Query: 680 -RGKIKLSMKVVDQNTGKP 697
            R +I L +K    N  + 
Sbjct: 229 ERRRISLGIKQCVSNPWED 247



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G +I          ++ID++                       +   
Sbjct: 207 IHPSKVVQVGDEVGVMI----------LDIDEERRRISLGIKQCVSN----PWEDFSGNF 252

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S          +  K+GD V   +L
Sbjct: 253 NKGDRISGKIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVREY-KKGDEVDTVIL 311

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 312 SVDPERERISLGIKQLESDP 331



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       + +   I KG V  V    A +      + ++  S++S +RV    + +KEG
Sbjct: 330 DPFAEFVQLNDKGSIVKGVVSAVDAKAATITLSDEVEAILKASEISRDRVEDARNALKEG 389

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           + V  K++  D + + I LS+K  D
Sbjct: 390 EEVEAKIISIDRKNRIINLSVKSKD 414


>gi|168205596|ref|ZP_02631601.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|169344206|ref|ZP_02865188.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169297664|gb|EDS79764.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170662934|gb|EDT15617.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 720

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++ + V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|121594077|ref|YP_985973.1| RNA-binding S1 domain-containing protein [Acidovorax sp. JS42]
 gi|120606157|gb|ABM41897.1| RNA binding S1 domain protein [Acidovorax sp. JS42]
          Length = 798

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK GD V VK+L+ D  
Sbjct: 680 MVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREVVKTGDIVKVKVLEVDAA 739

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSMK +D    +
Sbjct: 740 RKRISLSMK-LDAAPAR 755


>gi|167644076|ref|YP_001681739.1| 30S ribosomal protein S1 [Caulobacter sp. K31]
 gi|167346506|gb|ABZ69241.1| ribosomal protein S1 [Caulobacter sp. K31]
          Length = 569

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 104/259 (40%), Gaps = 28/259 (10%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDF------KVAGTDSGITAMQMDMKIGGISENI 516
           +MG     +  ++   + G E     +D       +V   + G+          G S  +
Sbjct: 21  SMGGRDFQEGTVVKGIVVGIEKDFAIIDVGLKTEGRVPQKEFGVDETGKATIKVGDSVEV 80

Query: 517 MVMALQQA---------KRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIP------- 559
            +  L+ A         K  R      +  V +++   +G    RV+    +        
Sbjct: 81  FLERLENALGEAVISREKAKREEAWTRLEGVYAKNEPVMGAIVGRVKGGFTVDLGGASAF 140

Query: 560 -PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVP 617
            P    ++  +         EQ  A + +D   G + ++  ++ E   A +    ++ + 
Sbjct: 141 LPGSQVDIRPVRDVGPLMGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVSQLQ 200

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V  + D+GAFV   G  DGL+H++ +S +RV   S V+  GDTV V+++  
Sbjct: 201 EG-EIREGVVKNITDYGAFVDL-GGIDGLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVKI 258

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           + D  +I L MK +  +  
Sbjct: 259 NPDTQRISLGMKQLQSDPW 277



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A      S  +   V    +G+V    +FG F+      DG+VH+S +       +   
Sbjct: 358 QALANPWDSFLETHPVGSTVEGEVKNATEFGLFIGLDNDIDGMVHLSDIDWSASGEEAMS 417

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             K+GD V  K+LD D ++ +I L +K +  + 
Sbjct: 418 RYKKGDMVKAKVLDVDVEKERISLGIKQLGGDP 450



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 275 DPWDGVEAKYPVGAKFTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +LD D  + ++ L +K    N  
Sbjct: 335 SQEVDVVVLDVDPSKRRVSLGLKQALANPW 364


>gi|56479339|ref|YP_160928.1| hypothetical protein ebA6834 [Aromatoleum aromaticum EbN1]
 gi|56315382|emb|CAI10027.1| conserved hypothetical protein, putative s1 rna binding domain
           protein [Aromatoleum aromaticum EbN1]
          Length = 782

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+   V     VVK G  V VK+L+ D  
Sbjct: 651 MMLEGTVTNVTNFGAFVDVGVHQDGLVHISALADRFVKDPHSVVKAGQVVKVKVLEVDLA 710

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M++ D+   
Sbjct: 711 RKRIALTMRMSDEPPA 726


>gi|90421783|ref|YP_530153.1| RNA binding S1 [Rhodopseudomonas palustris BisB18]
 gi|90103797|gb|ABD85834.1| RNA binding S1 [Rhodopseudomonas palustris BisB18]
          Length = 782

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K         +AA  M    T    +   + +G V  V  FGAFV     +DGLVHIS +
Sbjct: 626 KPGRDPRPAFKAAVFMEGVETLKDLKPGMVLEGAVTNVAAFGAFVDIGVHQDGLVHISAM 685

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           S   +    +VVK GD V VK+L+ D  R +I LS+++ D+   K
Sbjct: 686 SRSFIKDPREVVKPGDIVKVKVLEVDVARKRIALSLRLDDEVGAK 730


>gi|261867409|ref|YP_003255331.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412741|gb|ACX82112.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 771

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 20/164 (12%)

Query: 547 GEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
            E  P VE +       I++++G  G     +V Q  AK   D+   +        E+E 
Sbjct: 570 PEAYPVVEKILQATEQSIQDLMGNAG-----LVRQLDAKQFTDEQFGLPTVQDIFKELEK 624

Query: 606 AREMIR------------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                R                  +   I +G V  V +FGAFV     +DGLVHIS LS
Sbjct: 625 PGRDPRGEFKTATFADGVEEITDLKAGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            + V +   VVK GD V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 685 DKFVEEPHQVVKTGDIVKVKVLEVDVARRRIALTMR-LDESAVK 727


>gi|86747766|ref|YP_484262.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris HaA2]
 gi|86570794|gb|ABD05351.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris HaA2]
          Length = 565

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 231 DIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 279



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I    +     
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIK---INHETH 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L++  + +         FT RV  +      +   +  G + +  + E + 
Sbjct: 263 RISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 320

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     ++                  R       +   V    +G+V
Sbjct: 321 TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKYPVGSTVEGEV 380

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L  ++   +  D  K+GD V   +LD D ++ +I L
Sbjct: 381 KNKTEFGLFLGLDGDVDGMVHLSDLDWKQPGEQVIDNFKKGDMVKAIVLDVDVEKERISL 440

Query: 686 SMKVVDQNT 694
            +K ++ + 
Sbjct: 441 GVKQLEGDP 449



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 183/578 (31%), Gaps = 87/578 (15%)

Query: 164 NPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           NP  D+    LD   +G              L E  V+  I+    +   VI+   K   
Sbjct: 8   NPTRDDFAAMLDESFAG------------GNLQESSVIKGIVVAIEKDMAVIDVGLKTEG 55

Query: 224 MCAKEPIVIDSKDFSKLE-----EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
             A        +D S+L+     E     I+  L  +    +K  R +    L       
Sbjct: 56  RVALREFAGPGRD-SELKVGDTVEVFLDRIENALGEAVLSRDKARREESWGKL------- 107

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
              +    NE     +F  ++     TV LD  V    R    +R I     +    + S
Sbjct: 108 --EKAFQGNEKVFGVIFNQVKGG--FTVDLDGAVAFLPRSQVDIRPI---RDVAPLMNNS 160

Query: 339 SLFI-------RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM--MHYNFLPC-ATGEV 388
             F        RG+        L     EQ  + +   +    +  +  N     A  ++
Sbjct: 161 QPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDL 220

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
             +        G   +   A   V   T        +  +I + +  +   ++      L
Sbjct: 221 GGID-------GLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISL--GMKQL 271

Query: 449 MD---AGVPISKPVAGIAMGLVKDGDDFIILSDI-SGDE--DHLGHMDFKVAGTDSGITA 502
           +D    G+    P+     G V +  D+    ++  G E   H+  M +       G   
Sbjct: 272 LDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPG--- 328

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR---VEIMAIP 559
                KI   S+ + V  L+     R  I   + + +        E  P    VE     
Sbjct: 329 -----KIVSTSQEVEVQVLEVDSVKR-RISLGLKQTMRNPWEVFVEKYPVGSTVEGEVKN 382

Query: 560 PDQIRNVIGMGGKV--IRGIVEQTGAK-----VNIDDDGTVKIASSSLAEIEAAR----- 607
             +    +G+ G V  +  + +    +     ++    G +  A     ++E  R     
Sbjct: 383 KTEFGLFLGLDGDVDGMVHLSDLDWKQPGEQVIDNFKKGDMVKAIVLDVDVEKERISLGV 442

Query: 608 ----EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD 662
                   +     +   I   +V+ V + G  V   G      +  S+L+ +R  + ++
Sbjct: 443 KQLEGDPFAEPGDVKKGAIVTCEVLDVKESGIDVQIVGTDFATFIKRSELARDRNDQRAE 502

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
               G+ V  +++ FD +  K+++S+K ++    K  +
Sbjct: 503 RFAVGEKVDARVIQFDKKARKVQVSIKALEVAEEKEAI 540


>gi|329937088|ref|ZP_08286717.1| transcriptional accessory protein [Streptomyces griseoaurantiacus
           M045]
 gi|329303695|gb|EGG47580.1| transcriptional accessory protein [Streptomyces griseoaurantiacus
           M045]
          Length = 795

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  
Sbjct: 660 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDVDIP 719

Query: 680 RGKIKLSMKVVDQ 692
           R +I L++++ D+
Sbjct: 720 RKRISLTLRLDDE 732


>gi|299066633|emb|CBJ37826.1| transcriptional accessory protein [Ralstonia solanacearum CMR15]
          Length = 802

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 14/172 (8%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI-RGIVEQTGAK------VN 586
           + S V  E+   +     RV         I +V+G    +      E T  K      V+
Sbjct: 600 DRSSVHPEAYPVVQRILERV------KKGIGDVLGNREALRGLTAQEFTDDKFGLPTVVD 653

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +              A  +         +   + +G V  V  FGAF+     +DGL
Sbjct: 654 ILGELEKPGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGL 713

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+    P
Sbjct: 714 VHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLTDEPGQVP 765


>gi|265990396|ref|ZP_06102953.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1]
 gi|263001105|gb|EEZ13755.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. Rev.1]
          Length = 499

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 24  SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 82

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 83  VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 142

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 143 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 201

Query: 691 DQNTG 695
           + +  
Sbjct: 202 ESDPW 206



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 136 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 185

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 186 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 245

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 246 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 305

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 306 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 365

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 366 ERISLGIKQL 375



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 204 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 263

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 264 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 293



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       D  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 394 VVTCEVTAVTDGGLEVRLVDHDLDSFIRRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 453

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 454 TRKLQVSIKALEIAEEKEAV 473


>gi|154246172|ref|YP_001417130.1| 30S ribosomal protein S1 [Xanthobacter autotrophicus Py2]
 gi|154160257|gb|ABS67473.1| ribosomal protein S1 [Xanthobacter autotrophicus Py2]
          Length = 571

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E   I  G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRTVLEETRAEQRHELVQNLEEGQAI-DGVVKNITDYGAFVDL-GGIDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 228 DIAWRRVNHPTEVLNIGQTVKVKIIKINHETHRISLGMKQLLGDPWEGI 276



 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V   +KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 271 DPWEGIEAKYPVEARFKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 331 SQEVEVQVLEVDSAKRRISLGLKQTLQNPWE 361



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLNIGQTVKVKII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +       I   M ++L +    +    P           I +      +  G + +  +
Sbjct: 253 KINHETHRISLGMKQLLGDPWEGIEAKYPVEARFKGRVTNITDYGAFVELEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKI 622
            E +  K N+     V  +     ++                  +    +  +      +
Sbjct: 313 SEMSWTKKNVHPGKIVSTSQEVEVQVLEVDSAKRRISLGLKQTLQNPWEAFAEKYAPGAV 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  D  ++GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEYRKGDMVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K +  + 
Sbjct: 433 ERISLGIKQLAGDP 446



 Score = 41.8 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           +     +   I   +V  V D G  V   G      +  S+L+ ER  +  +    GD +
Sbjct: 448 AEAGEVKKGAIVTCEVTDVKDGGIEVKLTGTDLSAFIKRSELARERNDQRPERFSVGDKL 507

Query: 671 WVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
             ++  FD +  K+++S+K ++    K  V
Sbjct: 508 DARVTLFDRKARKVQVSVKALEIAEEKEAV 537


>gi|254713388|ref|ZP_05175199.1| 30S ribosomal protein S1 [Brucella ceti M644/93/1]
 gi|254716254|ref|ZP_05178065.1| 30S ribosomal protein S1 [Brucella ceti M13/05/1]
 gi|261218030|ref|ZP_05932311.1| ribosomal protein S1 [Brucella ceti M13/05/1]
 gi|261321120|ref|ZP_05960317.1| ribosomal protein S1 [Brucella ceti M644/93/1]
 gi|260923119|gb|EEX89687.1| ribosomal protein S1 [Brucella ceti M13/05/1]
 gi|261293810|gb|EEX97306.1| ribosomal protein S1 [Brucella ceti M644/93/1]
          Length = 566

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 91  SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 150 VTPLMHLPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 313 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 331 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 360



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       D  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 461 VVTCEVTAVTDGGLEVRLVDHDLDSFIRRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 521 TRKLQVSIKALEIAEEKEAV 540


>gi|237814503|ref|ZP_04593501.1| ribosomal protein S1 [Brucella abortus str. 2308 A]
 gi|237789340|gb|EEP63550.1| ribosomal protein S1 [Brucella abortus str. 2308 A]
          Length = 576

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 101 SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 159

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 160 VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 219

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 220 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 278

Query: 691 DQNTG 695
           + +  
Sbjct: 279 ESDPW 283



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 213 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 263 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 322

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 323 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 382

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 383 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 442

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 443 ERISLGIKQL 452



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 281 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 340

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 341 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 370



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I   +V  V D G  V       D  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 471 IVTCEVTAVTDGGLEVRLVDHDLDSFIRRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 530

Query: 681 G-KIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  V
Sbjct: 531 TSKLQVSIKALEIAEEKEAV 550


>gi|203284053|ref|YP_002221793.1| 30S ribosomal protein S1 [Borrelia duttonii Ly]
 gi|201083496|gb|ACH93087.1| 30S ribosomal protein S1 [Borrelia duttonii Ly]
          Length = 555

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIAS-----SSLAEIEAARE--MIRSITDVPEVNKIYKGQVVKV 630
           VE     +++DD   +KI         +     A +     S+    +V  I KG++VK+
Sbjct: 225 VENVEDFIHVDDKLRLKIIKLSTNTGKMELSLKALKVNPWDSVESKYKVESIVKGKIVKI 284

Query: 631 MDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + FGA V    A  G +HIS  S  R +    ++VK G  V VK+L+ D +  KI L +K
Sbjct: 285 LPFGAVVELDSAISGFLHISNFSWVRSIKSPQELVKVGQIVEVKILEIDKENQKISLGIK 344

Query: 689 VVDQNTGKPIV 699
            V++N    + 
Sbjct: 345 QVNENPWNNLA 355



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            +VE    + +  D   + +   +L       +    ++   E   I  G V K+ D+GA
Sbjct: 145 SVVEFYVIQADKSDGLRLILDRRTLEREREFLKRKELVSSYSEG-DIVDGIVEKITDYGA 203

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNT 694
            +       G++H   ++  RV    D +   D + +K++    + GK++LS+K +  N 
Sbjct: 204 IIRIKNLVLGVLHKRNIAFNRVENVEDFIHVDDKLRLKIIKLSTNTGKMELSLKALKVNP 263

Query: 695 GKPI 698
              +
Sbjct: 264 WDSV 267



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +   GAFV      D  +    +S           + G ++  K+++FD  R  IKL +
Sbjct: 370 NITKTGAFVSIEEGIDAYISKFDISWVEEVNPEKYFELGSSISGKVIEFDAKRQNIKLGI 429

Query: 688 KVVDQNTGKP 697
           K +++N    
Sbjct: 430 KQLEENPWDD 439



 Score = 37.2 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P++   +    G  I G V +  AK        +K+    L E           +   
Sbjct: 399 VNPEKYFEL----GSSISGKVIEFDAKRQ-----NIKLGIKQLEEN-----PWDDFSKSY 444

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS--DVVKEGDTVWVKLL 675
           +   + + ++++    G  V   G   G +   QL   + +     + +  GD + V + 
Sbjct: 445 KKGDVLEVEIMEKRSKGVQVRVYGKIMGFISKIQLGDTKESSLETFEKLNVGDKIKVIIT 504

Query: 676 DFDDRGK-IKLSMKV-VDQNTGKPI 698
           + D + K + LS K   +Q + + I
Sbjct: 505 NIDFKNKLVLLSYKAYKEQKSSEEI 529


>gi|91791611|ref|YP_561262.1| RNA binding S1 [Shewanella denitrificans OS217]
 gi|91713613|gb|ABE53539.1| RNA binding S1 [Shewanella denitrificans OS217]
          Length = 799

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 98/266 (36%), Gaps = 44/266 (16%)

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
             V G  + L  A  P+   VAG+   L K+  D+                         
Sbjct: 494 DCVNGVGVDLNMASAPLLAQVAGLNKTLAKNLVDYRD--------------------EHG 533

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
             T  +  +K+  +       A    +        + S V  E+   +     + +    
Sbjct: 534 QFTNRKQLLKVARLGPKAFEQAAGFLRIRGGDNPLDASSVHPEAYKLVETIAQKTQ---- 589

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP- 617
               I ++IG  G +     E       + D+  +   +  LAE++      R       
Sbjct: 590 --QAIDSLIGNSGLLSSIKAEDF-----VSDEFGLPTINDILAELDKPGRDPRGEFKTAS 642

Query: 618 -----------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                      +   I +G V  V +FGAFV     +DGLVHIS L+ + V+    +VK 
Sbjct: 643 FKEGVEELKDLKPEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTIVKA 702

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GD V VK+++ D +R +I LSM++ +
Sbjct: 703 GDVVKVKVMEVDIERRRIGLSMRLDE 728


>gi|222084305|ref|YP_002542834.1| ribosomal protein S1 [Agrobacterium radiobacter K84]
 gi|221721753|gb|ACM24909.1| ribosomal protein S1 [Agrobacterium radiobacter K84]
          Length = 567

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    I  E      E R++   F        +  D     +      IR I +
Sbjct: 91  SREKARREESWIKLEAKFEAGE-RVEGVIFNQVKGGFTVDLDGAIAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++  G V  + 
Sbjct: 150 VTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVDGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 92/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIQAKYPEGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                       +          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVEVVVLEVDPTKRRISLGLKQTLENPWAAFARNHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVDVDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G V  + D+GAFV      +GL+HIS++S  ++      ++     V V +L
Sbjct: 281 PEGKKI-SGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVEVVVL 339

Query: 676 DFDD-RGKIKLSMKVVDQNTG 695
           + D  + +I L +K   +N  
Sbjct: 340 EVDPTKRRISLGLKQTLENPW 360



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + LS +R  +  +    G  V  ++ +F  
Sbjct: 461 VVSCEVIAVNDGGIEVKLVSHDDITSFIRRADLSRDRDEQRPERFSVGQVVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI LS+K ++    K  V
Sbjct: 521 KDRKIMLSIKALEIAEEKEAV 541


>gi|150398644|ref|YP_001329111.1| 30S ribosomal protein S1 [Sinorhizobium medicae WSM419]
 gi|150030159|gb|ABR62276.1| ribosomal protein S1 [Sinorhizobium medicae WSM419]
          Length = 568

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 96/274 (35%), Gaps = 28/274 (10%)

Query: 449 MDAGVPISKPVAGI---AMGLVKDGDDFIILSDISGDEDHLGHMDFKV-----AGTDSGI 500
           M A  P     A +   +       + ++    ++  E  +  +D  +            
Sbjct: 1   MSATNPTRDDFAALLEESFAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFG 60

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG----------EFT 550
              +      G    + V  ++ A    +    +  +  S  RL++            F 
Sbjct: 61  AKAKDGTLKVGDEVEVYVERIENALGEAVLSREKARREESWQRLEVKFEAGERVEGIIFN 120

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEI 603
                  +  D     +      IR I + T         ++   D     I  S    +
Sbjct: 121 QVKGGFTVDLDGAVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVL 180

Query: 604 EAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E +R   RS      E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S+
Sbjct: 181 EESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSE 239

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           ++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 240 ILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 273



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGRDA 446



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 361



 Score = 44.1 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + LS +R  +  +    G TV  ++ +F  
Sbjct: 461 VVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRDRDEQRPERFSVGQTVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI+LS+K ++    K  V
Sbjct: 521 KDRKIQLSIKALEIAEEKEAV 541


>gi|115522477|ref|YP_779388.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris BisA53]
 gi|115516424|gb|ABJ04408.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris BisA53]
          Length = 565

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 231 DIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 279



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I    +     
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIK---INHETH 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L++  + +         FT RV  +      +   +  G + +  + E + 
Sbjct: 263 RISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 320

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     ++                  R       +   V    +G+V
Sbjct: 321 TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKYPVGSTVEGEV 380

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L  ++   +  D  K+GD V   +LD D ++ +I L
Sbjct: 381 KNKTEFGLFLGLDGEVDGMVHLSDLDWKQPGEQVIDNFKKGDVVKAIVLDVDVEKERISL 440

Query: 686 SMKVVDQNT 694
            +K ++ + 
Sbjct: 441 GVKQLEGDP 449



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 96/578 (16%), Positives = 185/578 (32%), Gaps = 87/578 (15%)

Query: 164 NPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           NP  D+    LD   +G              L E  V+  I+    +   VI+   K   
Sbjct: 8   NPSRDDFAAMLDESFAG------------GNLQESSVIKGIVVAIEKDMAVIDVGLKTEG 55

Query: 224 MCAKEPIVIDSKDFSKLE-----EEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSY 278
             A        +D S+L+     E     I+  L  +    +K  R +    L       
Sbjct: 56  RVALREFAGPGRD-SELKVGDTVEVFLDRIENALGEAVLSRDKARREESWGKL------- 107

Query: 279 FSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGS 338
              +  + NE     +F  ++     TV LD  V    R    +R I     +    + S
Sbjct: 108 --EKAFNNNEKVQGVIFNQVKGG--FTVDLDGAVAFLPRSQVDIRPI---RDVAPLMNNS 160

Query: 339 SLFI-------RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM--MHYNFLPC-ATGEV 388
             F        RG+        L     EQ  + +   +    +  +  N     A  ++
Sbjct: 161 QPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDL 220

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
             +        G   +   A   V   T        +  +I + +  +   ++      L
Sbjct: 221 GGID-------GLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISL--GMKQL 271

Query: 449 MD---AGVPISKPVAGIAMGLVKDGDDFIILSDI-SGDE--DHLGHMDFKVAGTDSGITA 502
           +D    G+    P+     G V +  D+    ++  G E   H+  M +       G   
Sbjct: 272 LDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPG--- 328

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR---VEIMAIP 559
                KI   S+ + V  L+     R  I   + + +        E  P    VE     
Sbjct: 329 -----KIVSTSQEVEVQVLEVDSVKR-RISLGLKQTMRNPWEVFVEKYPVGSTVEGEVKN 382

Query: 560 PDQIRNVIGMGGKV--IRGIVEQTGAK-----VNIDDDGTVKIASSSLAEIEAAR----- 607
             +    +G+ G+V  +  + +    +     ++    G V  A     ++E  R     
Sbjct: 383 KTEFGLFLGLDGEVDGMVHLSDLDWKQPGEQVIDNFKKGDVVKAIVLDVDVEKERISLGV 442

Query: 608 ----EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD 662
                   +     +   I   +++ V + G  V   G      +  S+L+ ER  + ++
Sbjct: 443 KQLEGDPFAEPGDVKKGAIVTCEIMDVKESGIDVQIVGTDFSTFIKRSELARERSDQRAE 502

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
               G+ V  +++ FD +  K+++S+K ++    K  +
Sbjct: 503 RFAVGEKVDARVIQFDKKARKVQVSIKALEVAEEKEAI 540


>gi|116493276|ref|YP_805011.1| RNA-binding protein [Pediococcus pentosaceus ATCC 25745]
 gi|116103426|gb|ABJ68569.1| RNA binding protein (S1 domain) [Pediococcus pentosaceus ATCC
           25745]
          Length = 168

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV     G+V  + +FGAF+     R GLVHIS++S   +    DV+  GDTV VK+
Sbjct: 1   MTIEVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKV 60

Query: 675 LDFDDRGKIKLS-MKVVD 691
           L   D GKI LS  K VD
Sbjct: 61  LSIADDGKIALSIRKAVD 78


>gi|322805479|emb|CBZ03043.1| SSU ribosomal protein S1p [Clostridium botulinum H04402 065]
          Length = 387

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A ++ +   + +   +          +  F P      I    ++++     ++++ 
Sbjct: 104 LEKAFKKEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKDEIVK- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + E   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKVVLSSRVVKEEEEAKRKEELWNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V ++  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPW 273



 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       ++   ++ D   V  + +G +
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTI 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 351 IKEATEKPKED 361



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPRKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|304385529|ref|ZP_07367873.1| S1 RNA-binding domain protein [Pediococcus acidilactici DSM 20284]
 gi|304328033|gb|EFL95255.1| S1 RNA-binding domain protein [Pediococcus acidilactici DSM 20284]
          Length = 149

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 44/79 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     R GLVHIS++S   V     V+K GD+V VK+L  
Sbjct: 4   EVGTKVDGKVSGITNFGAFVDLGEHRSGLVHISEVSDSFVKDIHSVLKVGDSVTVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
            D GKI LS++   +   +
Sbjct: 64  ADDGKIALSIRKAVERPAQ 82


>gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
          Length = 382

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFSDYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DIVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKEALEE 348



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  ++   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEEDDLV-LSKRAVDAE 90


>gi|197303562|ref|ZP_03168601.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC
           29176]
 gi|197297560|gb|EDY32121.1| hypothetical protein RUMLAC_02284 [Ruminococcus lactaris ATCC
           29176]
          Length = 362

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G 
Sbjct: 266 PWVNAAEDFAVGNVVTGKVARMTDFGAFVELAPGVDALLHVSQISKNHVDKPSDVLSIGQ 325

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            +  K++D ++   KI LSMK ++ ++
Sbjct: 326 EITAKVVDLNEAEKKISLSMKALESDS 352



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   +  +  ++  F P      +     +++    G+ I
Sbjct: 98  ERLREAFENHEVLKATVTQILGGGICTTVDEVRVFIPASL---VSDSYEKDLSKYEGQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E  + +     V    +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAERAEKQKELFAKLHVGDTVEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AFV   G  DGL+HIS++S  RV     V   GD + V + D  D  KI LS+K  + N 
Sbjct: 209 AFVDL-GGVDGLLHISEMSWGRVDNPKKVFHVGDELKVLVKDIRDT-KIALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  ++ S ++    + VV  G
Sbjct: 8   QMLDESFKTIHNGEVVEGTVIDVKPDEIILNIGYKADGIITKNEYSNDQSLDLTTVVNVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+ VK+L   D  G++ L+ K +    G
Sbjct: 68  DTMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|194016705|ref|ZP_03055318.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
           7061]
 gi|194011311|gb|EDW20880.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
           7061]
          Length = 383

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSQIGEKVKQGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           TV VK+LD + D  +I LS++ +++N  K I
Sbjct: 322 TVKVKVLDVNEDEERISLSIRDLEENPEKQI 352



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D +    I S      +   +  +      EV  +  G+V ++ DFGAFV   G  D
Sbjct: 153 VELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDFGAFVDI-GGID 211

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVHISQLS   V K SDVV+EG  V VK+L  D D  +I LS+K         I
Sbjct: 212 GLVHISQLSHAHVEKPSDVVEEGQEVQVKVLAVDRDNERISLSIKETLPGPWSQI 266



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVVK+
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSSLHVEKASDVVKD 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GD + +K+   +D   I LS + VD +
Sbjct: 64  GDELELKVTKVEDDALI-LSKRAVDAD 89


>gi|157692789|ref|YP_001487251.1| 30S ribosomal protein S1 [Bacillus pumilus SAFR-032]
 gi|157681547|gb|ABV62691.1| ribosomal protein S1 [Bacillus pumilus SAFR-032]
          Length = 383

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +  +   + +G V +++ FGAFV      +GLVHISQ+S + +    +V++EG 
Sbjct: 262 PWSQIGEKVKQGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQ 321

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           TV VK+LD + D  +I LS++ +++N  K I
Sbjct: 322 TVKVKVLDVNEDEERISLSIRDLEENPEKQI 352



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D +    I S      +   +  +      EV  +  G+V ++ DFGAFV   G  D
Sbjct: 153 VELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDFGAFVDI-GGID 211

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVHISQLS   V K SDVV+EG  V VK+L  D D  +I LS+K         I
Sbjct: 212 GLVHISQLSHAHVEKPSDVVEEGQEVQVKVLAVDRDNERISLSIKETLPGPWSQI 266



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKE 666
           EM +    VPEV  + KG V KV D    V     +  G++ IS+LS+  V K SDVVK+
Sbjct: 4   EMNQIDVQVPEVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSSLHVEKASDVVKD 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GD + +K+   +D   I LS + VD +
Sbjct: 64  GDELELKVTKVEDDALI-LSKRAVDAD 89


>gi|220929150|ref|YP_002506059.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium cellulolyticum H10]
 gi|219999478|gb|ACL76079.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           cellulolyticum H10]
          Length = 672

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 11/183 (6%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++  A +  +  ++ I  +++  +  +   +  F P  +I       +   +    +V
Sbjct: 379 LEVIERAYENKQPVKVKITEKVNGGVIGNASGVRVFIPASQISDRFVKDLSEFVKQVLQV 438

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
              I+E    K  +     + I  +  A           I D  E+ K YKGQV  +MDF
Sbjct: 439 --EIIELNKQKRKVVGSARILIEKNKEAASS-------LIWDSIEIGKTYKGQVKSLMDF 489

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  DGLVH+S+LS  ++   S+VVK GD + V +LDFD ++ +I L  K    
Sbjct: 490 GAFVDI-GGVDGLVHLSELSWNKIRHPSEVVKVGDEIIVSVLDFDKEKKRISLGYKKQSD 548

Query: 693 NTG 695
           N  
Sbjct: 549 NPW 551



 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +  +V  +  G+VV+++ FGAFV      DGLVHISQ+S+ R+ K  D +K G 
Sbjct: 550 PWIKAAEKYQVGNVVSGKVVRLVPFGAFVELEEGIDGLVHISQISSVRLGKPGDALKVGQ 609

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQ 692
            V  K+++FD +  KI LS+K V+ 
Sbjct: 610 QVDAKIIEFDTESKKISLSIKEVNP 634



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I +               +  +   S        +I KG+++   +   F+      DG+
Sbjct: 269 IKEVIHKMSELDRQDMEMSFADAFESSLVTLTTGQITKGKIIGYNNNEVFIDMGYKSDGI 328

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPIV 699
           + + + S +        +K GD + V ++   D  G + LS K VD   G  ++
Sbjct: 329 IPMQEFSDDPDFNPEKSLKVGDEIDVFVVRVNDGEGNVLLSKKRVDAVKGLEVI 382


>gi|6433781|emb|CAB60663.1| RnpH protein [Bradyrhizobium japonicum]
          Length = 86

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R   R  + +R ++ + G+++   GS L   GDT  +V  TL    +++    L G  R
Sbjct: 1   MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATL----EDRLPPWLKGQGR 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
                 Y  LP AT E +R  A + ++ G 
Sbjct: 57  GWVTAEYGMLPRATSERTRREASAGKQSGR 86



 Score = 44.5 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
          RP+ LE G + + ++G+ L  +G+T VL T   +  L     GQ    +T  Y     A 
Sbjct: 12 RPVTLERGVV-KYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVTAEYGMLPRAT 70

Query: 71 GKIPGGYLRRE 81
           +      RRE
Sbjct: 71 SER----TRRE 77


>gi|225626575|ref|ZP_03784614.1| ribosomal protein S1 [Brucella ceti str. Cudo]
 gi|294851434|ref|ZP_06792107.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026]
 gi|17983961|gb|AAL53096.1| ssu ribosomal protein s1p [Brucella melitensis bv. 1 str. 16M]
 gi|225618232|gb|EEH15275.1| ribosomal protein S1 [Brucella ceti str. Cudo]
 gi|294820023|gb|EFG37022.1| 30S ribosomal protein S1 [Brucella sp. NVSL 07-0026]
          Length = 576

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 101 SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 159

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 160 VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 219

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 220 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 278

Query: 691 DQNTG 695
           + +  
Sbjct: 279 ESDPW 283



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 213 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 263 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 322

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 323 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 382

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 383 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 442

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 443 ERISLGIKQL 452



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 281 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 340

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 341 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 370



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       D  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 471 VVTCEVTAVTDGGLEVRLVDHDLDSFIRRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 530

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 531 TRKLQVSIKALEIAEEKEAV 550


>gi|90421921|ref|YP_530291.1| 30S ribosomal protein S1 [Rhodopseudomonas palustris BisB18]
 gi|90103935|gb|ABD85972.1| SSU ribosomal protein S1P [Rhodopseudomonas palustris BisB18]
          Length = 565

 Score = 90.7 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRTVLEETRAEQRQELVQNLEEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++V+  G TV VK++  + +  +I L MK +  +  + I
Sbjct: 231 DIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGI 279



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     +N  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 274 DPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVST 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   +N  +
Sbjct: 334 SQEVEVQVLEVDSVKRRISLGLKQTMRNPWE 364



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  + ++     + +  +   +K+  I    +     
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIK---INHETH 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L++  + +         FT RV  +      +   +  G + +  + E + 
Sbjct: 263 RISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 320

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     ++                  R       +   V    +G+V
Sbjct: 321 TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKYPVGSTVEGEV 380

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L  ++   +  D  K+GD V   +LD D ++ +I L
Sbjct: 381 KNKTEFGLFLGLDGEVDGMVHLSDLDWKQPGEQVIDNFKKGDVVKAIVLDVDVEKERISL 440

Query: 686 SMKVVDQNT 694
            +K ++ + 
Sbjct: 441 GVKQLEGDP 449



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I   +++ V + G  V   G   +  +  S+L+ ER  + ++    G+ V  +++ FD +
Sbjct: 461 IVTCEIMDVKESGIDVQIVGTDFNTFIKRSELARERSDQRAERFAVGEKVDARVIQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  +
Sbjct: 521 ARKVQVSIKALEVAEEKEAI 540


>gi|293610676|ref|ZP_06692976.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827020|gb|EFF85385.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 794

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 18/140 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           ++++IG        I+ Q  A   +DD   +      LAE+E      R   R+     +
Sbjct: 590 VKDIIGNT-----EIIRQVKADEFVDDKFGLPTVQDVLAELEKPGRDPRPEFRTAKFRED 644

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + ++         +G +  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  V
Sbjct: 645 ITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIV 704

Query: 671 WVKLLDFD-DRGKIKLSMKV 689
            V+++  D +R ++ LSM+ 
Sbjct: 705 QVRVMQVDVERNRVNLSMRA 724


>gi|158286052|ref|XP_308573.4| AGAP007212-PA [Anopheles gambiae str. PEST]
 gi|157020283|gb|EAA04624.5| AGAP007212-PA [Anopheles gambiae str. PEST]
          Length = 1288

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 5/105 (4%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLST 654
                    R M   + + PE   IY G+VV ++ FG FV   G    ++GLVHISQLST
Sbjct: 306 REPPAAMEKRRMPPPMPEEPEPGHIYDGRVVNIVAFGCFVQLNGFRRKKEGLVHISQLST 365

Query: 655 E-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           E RV   +DVV  GD V VK++      KI LSMK V+Q++G+ +
Sbjct: 366 EGRVNLVTDVVNRGDEVKVKVMSLAG-NKISLSMKEVEQSSGRDL 409


>gi|62289016|ref|YP_220809.1| 30S ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941]
 gi|82698954|ref|YP_413528.1| 30S ribosomal protein S1 [Brucella melitensis biovar Abortus 2308]
 gi|189023292|ref|YP_001934060.1| 30S ribosomal protein S1 [Brucella abortus S19]
 gi|254696460|ref|ZP_05158288.1| 30S ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731372|ref|ZP_05189950.1| 30S ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
 gi|260546309|ref|ZP_05822049.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260759107|ref|ZP_05871455.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
 gi|260760832|ref|ZP_05873175.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
 gi|62195148|gb|AAX73448.1| RpsA, ribosomal protein S1 [Brucella abortus bv. 1 str. 9-941]
 gi|82615055|emb|CAJ09981.1| Ribosomal protein S1:RNA binding S1 [Brucella melitensis biovar
           Abortus 2308]
 gi|189018864|gb|ACD71586.1| Ribosomal protein S1 [Brucella abortus S19]
 gi|260096416|gb|EEW80292.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260669425|gb|EEX56365.1| ribosomal protein S1 [Brucella abortus bv. 4 str. 292]
 gi|260671264|gb|EEX58085.1| ribosomal protein S1 [Brucella abortus bv. 2 str. 86/8/59]
          Length = 566

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 91  SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 150 VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 313 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 331 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 360



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I   +V  V D G  V       D  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 461 IVTCEVTAVTDGGLEVRLVDHDLDSFIRRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 520

Query: 681 G-KIKLSMKVVDQNTGKPIV 699
             K+++S+K ++    K  V
Sbjct: 521 TSKLQVSIKALEIAEEKEAV 540


>gi|307306420|ref|ZP_07586164.1| ribosomal protein S1 [Sinorhizobium meliloti BL225C]
 gi|306902262|gb|EFN32859.1| ribosomal protein S1 [Sinorhizobium meliloti BL225C]
          Length = 568

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 96/274 (35%), Gaps = 28/274 (10%)

Query: 449 MDAGVPISKPVAGI---AMGLVKDGDDFIILSDISGDEDHLGHMDFKV-----AGTDSGI 500
           M A  P     A +   +       + ++    ++  E  +  +D  +            
Sbjct: 1   MSATNPTRDDFAALLEESFAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFG 60

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG----------EFT 550
              +      G    + V  ++ A    +    +  +  S  RL++            F 
Sbjct: 61  AKAKDGTLKVGDEVEVYVERIENALGEAVLSREKARREESWQRLEVKFEAGERVEGIIFN 120

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEI 603
                  +  D     +      IR I + T         ++   D     I  S    +
Sbjct: 121 QVKGGFTVDLDGAVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVL 180

Query: 604 EAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E +R   RS      E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S+
Sbjct: 181 EESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSE 239

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           ++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 240 ILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 273



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGRDA 446



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 361



 Score = 44.1 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + LS +R  +  +    G TV  ++ +F  
Sbjct: 461 VVSAEVIGVNDGGIEVRLINHEDVTAFIRRADLSRDRDEQRPERFSVGQTVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI+LS+K ++    K  V
Sbjct: 521 KDRKIQLSIKALEIAEEKEAV 541


>gi|237797943|ref|ZP_04586404.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020794|gb|EGI00851.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 773

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         ++  I +G V  V +FGAFV     +DG
Sbjct: 615 DILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           LVHIS LS + +    + VK GD V VK+++ D  R ++ LSM++ D   G+ I
Sbjct: 675 LVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRRRVGLSMRMSD-TPGEKI 727


>gi|194883184|ref|XP_001975683.1| GG20423 [Drosophila erecta]
 gi|190658870|gb|EDV56083.1| GG20423 [Drosophila erecta]
          Length = 1240

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEG 667
           +++D PE  KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV   
Sbjct: 275 AMSDDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRN 334

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            TV VK++    + K+ LSMK VDQ++GK +
Sbjct: 335 QTVKVKVMTITGQ-KVSLSMKEVDQDSGKDL 364


>gi|138896517|ref|YP_001126970.1| general stress protein 13 [Geobacillus thermodenitrificans NG80-2]
 gi|134268030|gb|ABO68225.1| Polyribonucleotide nucleotidyltransferase, general stress protein
           13 [Geobacillus thermodenitrificans NG80-2]
          Length = 124

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG+V  +  +GAFV   G   GL+HIS++S   V    D V  GD V VK+LD D   
Sbjct: 12  IVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVKVLDVDYKA 71

Query: 681 GKIKLSMKVVDQNTGK 696
           G+  LS+K ++    K
Sbjct: 72  GRASLSLKALEPGREK 87


>gi|15964008|ref|NP_384361.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021]
 gi|307319307|ref|ZP_07598736.1| ribosomal protein S1 [Sinorhizobium meliloti AK83]
 gi|7404449|sp|P14129|RS1_RHIME RecName: Full=30S ribosomal protein S1
 gi|15073184|emb|CAC41692.1| 30S ribosomal protein S1 [Sinorhizobium meliloti 1021]
 gi|306895143|gb|EFN25900.1| ribosomal protein S1 [Sinorhizobium meliloti AK83]
          Length = 568

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 96/274 (35%), Gaps = 28/274 (10%)

Query: 449 MDAGVPISKPVAGI---AMGLVKDGDDFIILSDISGDEDHLGHMDFKV-----AGTDSGI 500
           M A  P     A +   +       + ++    ++  E  +  +D  +            
Sbjct: 1   MSATNPTRDDFAALLEESFAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFG 60

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG----------EFT 550
              +      G    + V  ++ A    +    +  +  S  RL++            F 
Sbjct: 61  AKAKDGTLKVGDEVEVYVERIENALGEAVLSREKARREESWQRLEVKFEAGERVEGIIFN 120

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEI 603
                  +  D     +      IR I + T         ++   D     I  S    +
Sbjct: 121 QVKGGFTVDLDGAVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVL 180

Query: 604 EAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E +R   RS      E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   S+
Sbjct: 181 EESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSE 239

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           ++  G  V V+++  + +  +I L MK ++ +  
Sbjct: 240 ILNIGQQVKVQIIRINQETHRISLGMKQLESDPW 273



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGRDA 446



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 361



 Score = 44.1 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + LS +R  +  +    G TV  ++ +F  
Sbjct: 461 VVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRDRDEQRPERFSVGQTVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI+LS+K ++    K  V
Sbjct: 521 KDRKIQLSIKALEIAEEKEAV 541


>gi|34765734|gb|AAQ82439.1| unknown [Pseudomonas syringae pv. syringae]
          Length = 343

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         ++  I +G V  V +FGAFV     +DG
Sbjct: 186 DILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDG 245

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           LVHIS LS + +    + VK GD V VK+++ D  R ++ LSM++ D   G+ I
Sbjct: 246 LVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSD-TPGEKI 298


>gi|170741136|ref|YP_001769791.1| RNA-binding S1 domain-containing protein [Methylobacterium sp.
           4-46]
 gi|168195410|gb|ACA17357.1| RNA binding S1 domain protein [Methylobacterium sp. 4-46]
          Length = 776

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVHIS LS   V     VVK GD V VK+LD 
Sbjct: 649 KPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISALSNSFVRDPRAVVKPGDVVRVKVLDV 708

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I L+M++ D    +P
Sbjct: 709 DVPRKRISLTMRLDDAPQARP 729


>gi|326389632|ref|ZP_08211198.1| Tex-like protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994347|gb|EGD52773.1| Tex-like protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 712

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              +  +      G V  V DFG FV      DGLVH S++S   +    DVV  GD V 
Sbjct: 635 MTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHFSEMSQNYIKHPLDVVSVGDIVK 694

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V++L  D +R +I LSMK
Sbjct: 695 VRVLSVDIERNRISLSMK 712


>gi|257869555|ref|ZP_05649208.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
 gi|257803719|gb|EEV32541.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
          Length = 402

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 581 TGAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           T   V I+  +  + ++  ++ E E  ++    + D+ E  +I +G+V ++ DFGAFV  
Sbjct: 167 TFKIVEIEPSENRLILSHKAVVEAEKEKQKEALLADLYEGQEI-EGKVARLTDFGAFVDL 225

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G  DGLVH+S++S   V K SDV+  GDTV V++L  D ++ ++ LS+K         I
Sbjct: 226 -GGIDGLVHVSEISHAHVGKPSDVLSVGDTVNVRVLSVDPNKERVSLSIKDTLPGPWSNI 284



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I +   V  +  G V ++  FGAFV      +GL+HISQ+S + +A   +V+ EGD
Sbjct: 280 PWSNIEEQAPVGSVLDGVVKRLTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLHEGD 339

Query: 669 TVWVKLLDFDD-RGKIKLSMK 688
            V VK+L+ +    +I LS+K
Sbjct: 340 QVQVKVLEVNPTDHRIALSIK 360



 Score = 41.8 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
           ++ +     + E          V  I KG+V+ + D  A V   G   +G+V   +LST 
Sbjct: 6   NNQVENGNESMEAALDNFQEVNVGDIVKGEVLAIEDKQAIVGIEGAGVEGVVPAKELSTL 65

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD-QNTGKPI 698
            V   ++VVK GD + + ++    + K      LS + +D +   + I
Sbjct: 66  PVEDINEVVKVGDVLELVVISAIGKDKENGSYLLSKRRLDAKKVWEDI 113


>gi|24376102|ref|NP_720145.1| hypothetical protein SO_4629 [Shewanella oneidensis MR-1]
 gi|24351131|gb|AAN57589.1|AE015894_9 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 784

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++ 
Sbjct: 650 KPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVMEV 709

Query: 678 D-DRGKIKLSMK---VVDQN 693
           D +R +I LSM+    +DQ+
Sbjct: 710 DVERRRIGLSMRLDEAIDQS 729


>gi|254435439|ref|ZP_05048946.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
 gi|207088550|gb|EDZ65822.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
          Length = 580

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 22/275 (8%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPV----AGIAMGLVKDGDDFIILS-DISGDEDH 485
           ++D   +  ++   ++      + I   V    AG     V   + F     +++  E  
Sbjct: 32  QADMPMAPGSIVTGTV------MEIRSDVVIVNAGFKSEGVISAEQFRDEKGNLNISEGD 85

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           L  +  +      G T +           N +  A +  +     +  ++    +     
Sbjct: 86  LVEVALEAIEDGFGETRLSRQKAKEARVWNDLEGAFEAGETITGVLTGKVKGGFTVDLNG 145

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   + A P      +     +     +++    +       V   +   AE  A
Sbjct: 146 VRAFLPGSLVDARPVRDTAYLESKELEFKLIKLDRRRNNI------VVSRRAVMEAEYSA 199

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            RE + S     E  K  KG V  + D+GAFV   G  DGL+HI+ +S +R+   S+VV 
Sbjct: 200 EREALLSS---LEEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHPSEVVN 255

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            GD + V++L FD +R ++ L +K + ++  K + 
Sbjct: 256 IGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDLA 290



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQV 627
              ++     VNI DD TV++               +   +  + +           G+V
Sbjct: 244 WKRIKHPSEVVNIGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDLARRYLDGTRLFGKV 303

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             V D+G FV      +GLVH+S++    +    S +V+ G+ V V +LD D +R +I L
Sbjct: 304 TNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRRISL 363

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 364 GMKQCLPNPWEE 375



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G+ +  +V      ++ID++                           
Sbjct: 335 IHPSKMVQV----GEEVEVMV------LDIDEERRRISLGMKQCLPN----PWEEFAHRY 380

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
             +    G++  + DFG FV   G  DGLVH+S +S    A   +++   K+GD V   +
Sbjct: 381 NKDDRVAGEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVV 438

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 439 LAIDPERERISLGVKQLEDDP 459



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S         I KG V  V   GA +      +G +  S+++ ER+      +  G
Sbjct: 458 DPFSSYIATCPKGSIVKGIVKVVDTRGAVIELAEGVEGHLRASEIARERIDDARTSLNVG 517

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D++  K    D + + I LS++  D
Sbjct: 518 DSIEAKFTGIDRKNRVITLSVRAKD 542


>gi|28572628|ref|NP_789408.1| 30S ribosomal protein S1 [Tropheryma whipplei TW08/27]
 gi|28410760|emb|CAD67146.1| 30s ribosomal protein S1 [Tropheryma whipplei TW08/27]
          Length = 473

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I   ++R++    G  I   V +   + N      V ++   L E   +        ++ 
Sbjct: 146 IDIRRVRDLSSYLGMEIEAKVLELDRQRN-----NVVLSRRVLLEQNQSEARTSLFGNLH 200

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ KG V  ++ FGAFV   G  DGLVHIS++S + V + S+V+K G+ V V++L+ 
Sbjct: 201 KG-QVRKGTVSSIVSFGAFVDL-GGIDGLVHISEISWKHVTQPSEVLKVGEEVTVEILEV 258

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +R ++ LS++   ++  +
Sbjct: 259 DSERHRVSLSLRATQEDPWQ 278



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + +I  G V KVM+FG FV      +GL H+S+L    +  T DV   G
Sbjct: 275 DPWQVFAHDHAIGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLESTEDVFSPG 334

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V+VK++D D D  +I LS+K 
Sbjct: 335 DEVFVKIVDIDIDSRRISLSLKQ 357



 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G VV+V      V      +G++ + +LS       +++++ G TV   +    D 
Sbjct: 30  DIVVGTVVRVYRDEVLVDVGYKTEGVIPVKELSLRADVDPNELLEVGSTVEALVFQKEDS 89

Query: 680 RGKIKLSMKVVD 691
           +G++ LS K   
Sbjct: 90  QGRLILSKKRAQ 101


>gi|23500942|ref|NP_697069.1| 30S ribosomal protein S1 [Brucella suis 1330]
 gi|148560426|ref|YP_001258073.1| 30S ribosomal protein S1 [Brucella ovis ATCC 25840]
 gi|161511120|ref|NP_540832.2| 30S ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
 gi|161618017|ref|YP_001591904.1| 30S ribosomal protein S1 [Brucella canis ATCC 23365]
 gi|163842303|ref|YP_001626707.1| 30S ribosomal protein S1 [Brucella suis ATCC 23445]
 gi|225851571|ref|YP_002731804.1| 30S ribosomal protein S1 [Brucella melitensis ATCC 23457]
 gi|254690342|ref|ZP_05153596.1| 30S ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
 gi|254694831|ref|ZP_05156659.1| 30S ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
 gi|254700843|ref|ZP_05162671.1| 30S ribosomal protein S1 [Brucella suis bv. 5 str. 513]
 gi|254705209|ref|ZP_05167037.1| 30S ribosomal protein S1 [Brucella suis bv. 3 str. 686]
 gi|254707271|ref|ZP_05169099.1| 30S ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
 gi|254709187|ref|ZP_05170998.1| 30S ribosomal protein S1 [Brucella pinnipedialis B2/94]
 gi|254718248|ref|ZP_05180059.1| 30S ribosomal protein S1 [Brucella sp. 83/13]
 gi|256030711|ref|ZP_05444325.1| 30S ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
 gi|256060170|ref|ZP_05450352.1| 30S ribosomal protein S1 [Brucella neotomae 5K33]
 gi|256112535|ref|ZP_05453456.1| 30S ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
 gi|256158714|ref|ZP_05456593.1| 30S ribosomal protein S1 [Brucella ceti M490/95/1]
 gi|256254116|ref|ZP_05459652.1| 30S ribosomal protein S1 [Brucella ceti B1/94]
 gi|256258596|ref|ZP_05464132.1| 30S ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
 gi|256264918|ref|ZP_05467450.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
 gi|256368492|ref|YP_003105998.1| 30S ribosomal protein S1 [Brucella microti CCM 4915]
 gi|260169614|ref|ZP_05756425.1| 30S ribosomal protein S1 [Brucella sp. F5/99]
 gi|260563108|ref|ZP_05833594.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
 gi|260567325|ref|ZP_05837795.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260755883|ref|ZP_05868231.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
 gi|260884907|ref|ZP_05896521.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
 gi|261215158|ref|ZP_05929439.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
 gi|261221257|ref|ZP_05935538.1| ribosomal protein S1 [Brucella ceti B1/94]
 gi|261314754|ref|ZP_05953951.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
 gi|261316687|ref|ZP_05955884.1| ribosomal protein S1 [Brucella pinnipedialis B2/94]
 gi|261324148|ref|ZP_05963345.1| ribosomal protein S1 [Brucella neotomae 5K33]
 gi|261751352|ref|ZP_05995061.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513]
 gi|261755917|ref|ZP_05999626.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686]
 gi|261759142|ref|ZP_06002851.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|265983208|ref|ZP_06095943.1| ribosomal protein S1 [Brucella sp. 83/13]
 gi|265987757|ref|ZP_06100314.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
 gi|265993974|ref|ZP_06106531.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
 gi|265997218|ref|ZP_06109775.1| ribosomal protein S1 [Brucella ceti M490/95/1]
 gi|297247435|ref|ZP_06931153.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196]
 gi|306839990|ref|ZP_07472784.1| ribosomal protein S1 [Brucella sp. NF 2653]
 gi|306842680|ref|ZP_07475323.1| ribosomal protein S1 [Brucella sp. BO2]
 gi|306843627|ref|ZP_07476228.1| ribosomal protein S1 [Brucella sp. BO1]
 gi|23346797|gb|AAN28984.1| ribosomal protein S1 [Brucella suis 1330]
 gi|148371683|gb|ABQ61662.1| ribosomal protein S1 [Brucella ovis ATCC 25840]
 gi|161334828|gb|ABX61133.1| ribosomal protein S1 [Brucella canis ATCC 23365]
 gi|163673026|gb|ABY37137.1| ribosomal protein S1 [Brucella suis ATCC 23445]
 gi|225639936|gb|ACN99849.1| ribosomal protein S1 [Brucella melitensis ATCC 23457]
 gi|255998650|gb|ACU47049.1| 30S ribosomal protein S1 [Brucella microti CCM 4915]
 gi|260153124|gb|EEW88216.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M]
 gi|260156843|gb|EEW91923.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260675991|gb|EEX62812.1| ribosomal protein S1 [Brucella abortus bv. 6 str. 870]
 gi|260874435|gb|EEX81504.1| ribosomal protein S1 [Brucella abortus bv. 9 str. C68]
 gi|260916765|gb|EEX83626.1| ribosomal protein S1 [Brucella abortus bv. 3 str. Tulya]
 gi|260919841|gb|EEX86494.1| ribosomal protein S1 [Brucella ceti B1/94]
 gi|261295910|gb|EEX99406.1| ribosomal protein S1 [Brucella pinnipedialis B2/94]
 gi|261300128|gb|EEY03625.1| ribosomal protein S1 [Brucella neotomae 5K33]
 gi|261303780|gb|EEY07277.1| ribosomal protein S1 [Brucella pinnipedialis M163/99/10]
 gi|261739126|gb|EEY27122.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|261741105|gb|EEY29031.1| ribosomal protein S1 [Brucella suis bv. 5 str. 513]
 gi|261745670|gb|EEY33596.1| ribosomal protein S1 [Brucella suis bv. 3 str. 686]
 gi|262551686|gb|EEZ07676.1| ribosomal protein S1 [Brucella ceti M490/95/1]
 gi|262764955|gb|EEZ10876.1| ribosomal protein S1 [Brucella melitensis bv. 3 str. Ether]
 gi|263095403|gb|EEZ19004.1| 30S ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9]
 gi|264659954|gb|EEZ30215.1| ribosomal protein S1 [Brucella pinnipedialis M292/94/1]
 gi|264661800|gb|EEZ32061.1| ribosomal protein S1 [Brucella sp. 83/13]
 gi|297174604|gb|EFH33951.1| 30S ribosomal protein S1 [Brucella abortus bv. 5 str. B3196]
 gi|306276318|gb|EFM58018.1| ribosomal protein S1 [Brucella sp. BO1]
 gi|306287126|gb|EFM58628.1| ribosomal protein S1 [Brucella sp. BO2]
 gi|306404954|gb|EFM61239.1| ribosomal protein S1 [Brucella sp. NF 2653]
 gi|326408040|gb|ADZ65105.1| 30S ribosomal protein S1 [Brucella melitensis M28]
 gi|326537757|gb|ADZ85972.1| ribosomal protein S1 [Brucella melitensis M5-90]
          Length = 566

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    +  E      E R+    F        +  D     +      IR I +
Sbjct: 91  SREKARREESWVKLEQKFANGE-RVDGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++ +G V  + 
Sbjct: 150 VTPLMHVPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G TV V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILTIGQTVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + +      I +      I  G + +  +
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +         +                       +      V  +
Sbjct: 313 SEMSWTKKNVHPGKILSTTQEVEVVVLEVDPVKRRISLGLKQTLDNPWTTFAQKYPVGTV 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G+ V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGEVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K   G V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPIGKKITGTVTNITDYGAFVEIEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 331 TQEVEVVVLEVDPVKRRISLGLKQTLDNPW 360



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V  V D G  V       D  +  S LS +R  +  +    G  V  +++ FD +
Sbjct: 461 VVTCEVTAVTDGGLEVRLVDHDLDSFIRRSDLSRDRDEQRPERFTVGQKVDARVIAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + +++S+K ++    K  V
Sbjct: 521 TRKLQVSIKALEIAEEKEAV 540


>gi|28493260|ref|NP_787421.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
 gi|28476301|gb|AAO44390.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
          Length = 473

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I   ++R++    G  I   V +   + N      V ++   L E   +        ++ 
Sbjct: 146 IDIRRVRDLSSYLGMEIEAKVLELDRQRN-----NVVLSRRVLLEQNQSEARTSLFGNLH 200

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ KG V  ++ FGAFV   G  DGLVHIS++S + V + S+V+K G+ V V++L+ 
Sbjct: 201 KG-QVRKGTVSSIVSFGAFVDL-GGIDGLVHISEISWKHVTQPSEVLKVGEEVTVEILEV 258

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +R ++ LS++   ++  +
Sbjct: 259 DSERHRVSLSLRATQEDPWQ 278



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + +I  G V KVM+FG FV      +GL H+S+L    +  T DV   G
Sbjct: 275 DPWQVFAHDHAIGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLESTEDVFSPG 334

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V+VK++D D D  +I LS+K 
Sbjct: 335 DEVFVKIVDIDIDSRRISLSLKQ 357



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G VV+V      V      +G++ + +LS       +++++ G TV   +    D 
Sbjct: 30  DIVVGTVVRVYRDEVLVDVGYKTEGVIPVKELSLRADVDPNELLEVGSTVEALVFQKEDS 89

Query: 680 RGKIKLSMKVVD 691
           +G++ LS K   
Sbjct: 90  QGRLILSKKRAQ 101


>gi|313889154|ref|ZP_07822810.1| S1 RNA binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844894|gb|EFR32299.1| S1 RNA binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 125

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I +G V KV  FGAFV     + GLVHIS+++   V   ++ + EGD V VK+L  D++
Sbjct: 7   DIVEGVVTKVAKFGAFVDLEDGKSGLVHISEIADTFVKDINNHISEGDEVKVKVLSIDEK 66

Query: 681 GKIKLSMKV 689
           GKI LS+K 
Sbjct: 67  GKIALSIKD 75


>gi|88703318|ref|ZP_01101034.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
 gi|88702032|gb|EAQ99135.1| S1 RNA binding domain protein [Congregibacter litoralis KT71]
          Length = 792

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         + + + +G V  V  FGAFV     +DG
Sbjct: 617 DILGELEKPGRDPRPEFKTAKLQAGVEKITDLKPDMVLEGTVTNVTSFGAFVDVGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD------QNTGK 696
           LVHIS ++ + V    DV K GD V VK++  D +R ++ LSM++ D      Q+ G+
Sbjct: 677 LVHISAMAEKFVKDPRDVAKAGDIVTVKVMSIDVERKRVGLSMRLSDSAEDSQQDPGQ 734


>gi|134101848|ref|YP_001107509.1| RNA binding S1:resolvase, RNase H-like fold [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914471|emb|CAM04584.1| RNA binding S1:resolvase, RNase H-like fold [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 796

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 586 NIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDF 633
            +DD   +   +  LAE+E      R   ++ T    V KI         +G V  V  F
Sbjct: 606 FVDDKFGLPTVTDILAELEKPGRDPRPTFKTATFADGVEKIGDLKPGMRLEGVVTNVAAF 665

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV     +DGLVH+S +S   V+   DVVK GD V VK+LD D  R +I L++++ D+
Sbjct: 666 GAFVDVGVHQDGLVHVSAMSKNFVSDPHDVVKSGDVVRVKVLDVDIPRKRISLTLRLDDE 725

Query: 693 NTG 695
             G
Sbjct: 726 AGG 728


>gi|309782606|ref|ZP_07677329.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308918697|gb|EFP64371.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 788

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 547 GEFTPRVEIMAIPPDQ-IRNVIG----MGGKVIRGIVEQTG---AKVNIDDDGTVKIASS 598
            E  P V+ +     + I +V+G    + G   R   ++       V+I  +        
Sbjct: 590 PEAYPVVKRILDSIKKGIGDVLGNREALRGLTARDFTDEKFGLPTVVDILSELEKPGRDP 649

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                 A  +         +   + +G V  V  FGAF+     +DGLVH+S LST+ V 
Sbjct: 650 RPEFKTATFQDGVEDIKDLQPRMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVR 709

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              +VVK G  V VK+++ D  R +I L+M++ D+ 
Sbjct: 710 DPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLSDEP 745


>gi|300691366|ref|YP_003752361.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
 gi|299078426|emb|CBJ51078.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
          Length = 779

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I  +              A  +         +   + +G V  V  FGAF+     +D
Sbjct: 629 VDILGELEKPGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFIDIGVHQD 688

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+    P
Sbjct: 689 GLVHVSALSTKFVRDPHEVVKPGQVVKVKVMEVDVKRNRIGLTMRLADEPGQVP 742


>gi|25028495|ref|NP_738549.1| putative transcriptional accessory protein [Corynebacterium
           efficiens YS-314]
 gi|259507552|ref|ZP_05750452.1| histidine triad domain-containing protein [Corynebacterium
           efficiens YS-314]
 gi|23493780|dbj|BAC18749.1| putative transcriptional accessory protein [Corynebacterium
           efficiens YS-314]
 gi|259164872|gb|EEW49426.1| histidine triad domain-containing protein [Corynebacterium
           efficiens YS-314]
          Length = 775

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ G  V VK+++ D D
Sbjct: 645 MILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSEKFISDPHEVVRSGQVVKVKVMEVDVD 704

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I LS++ ++   G+P
Sbjct: 705 RKRIGLSLR-LNDEPGQP 721


>gi|218961511|ref|YP_001741286.1| 30S ribosomal subunit protein S1 (modular protein) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730168|emb|CAO81080.1| 30S ribosomal subunit protein S1 (modular protein) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 932

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 11/188 (5%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I+   +  A          I   +   +    L +  F P  ++   P   +   IG   
Sbjct: 185 INIERIKQAFADKSSLSGIIRRRVKGGMIVDVLGIEAFLPGSQMSLKPIPNLDQFIGK-- 242

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
                  E     VNID++    I S      E A +  + +    +++    G+V  + 
Sbjct: 243 -------ELYFKVVNIDEEHHNIILSRRQVLEEEAEQKRQELLRKIQIDAELDGEVKNIT 295

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            +GAF+   G  DGL+H++ +S  ++   S++++ GD V VK+++FD +  +I L MK +
Sbjct: 296 QYGAFIDL-GGIDGLLHLTDMSWGKLNHPSEMLQIGDKVKVKVINFDPETNRISLGMKQL 354

Query: 691 DQNTGKPI 698
             +  + I
Sbjct: 355 VPHPWENI 362



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 95/252 (37%), Gaps = 20/252 (7%)

Query: 464 MGLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIM---- 517
            G+++      ++ D+ G E  L    M  K           ++  K+  I E       
Sbjct: 201 SGIIRRRVKGGMIVDVLGIEAFLPGSQMSLKPIPNLDQFIGKELYFKVVNIDEEHHNIIL 260

Query: 518 --VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
                L++    +   L    ++ +E   ++   T       I    I  ++ +      
Sbjct: 261 SRRQVLEEEAEQKRQELLRKIQIDAELDGEVKNITQ--YGAFIDLGGIDGLLHLTDMS-W 317

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI-------YKGQVV 628
           G +      + I D   VK+ +        +  M + +    E  +I         G+VV
Sbjct: 318 GKLNHPSEMLQIGDKVKVKVINFDPETNRISLGMKQLVPHPWENIEIKYPEGSRVTGKVV 377

Query: 629 KVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            +  FGAFV      +GLVHIS++S  +++      +K G+T+   +LD D +  +I L 
Sbjct: 378 NLKPFGAFVELEPGVEGLVHISEMSWTKKITDAHKFLKIGETINAIVLDIDKENKRISLG 437

Query: 687 MKVVDQNTGKPI 698
           MK ++ N    I
Sbjct: 438 MKQMEPNPWLTI 449



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           G+ I  IV      ++ID +           E         +I D   +  I   ++  +
Sbjct: 417 GETINAIV------LDIDKENKRISLGMKQMEPN----PWLTIEDRYPIGTILTRKIKSL 466

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             FGAFV      DGL+HIS +S  +R+    +V K+   V   +L  D  + ++ L +K
Sbjct: 467 TAFGAFVEIEEGIDGLIHISDISWTKRIYHPREVYKKNQEVEAVVLSIDRAQHRVALGVK 526

Query: 689 VVDQNTGKPI 698
            +  +  + +
Sbjct: 527 QLVPDPWETL 536



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLSTERVAKTSDVV 664
           +   ++     +N   KG++ K++  G  V      D   G V +S L+  ++  + D  
Sbjct: 531 DPWETLDQSLPINTEVKGKIGKLIPKGVLVDIPVNNDVVEGFVPVSHLAIPKLEHSEDAF 590

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKV 689
             G+ + +K+++ D +  ++ LS+K 
Sbjct: 591 YIGEEIPLKVIELDMENRRLILSVKA 616


>gi|145588687|ref|YP_001155284.1| 30S ribosomal protein S1 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047093|gb|ABP33720.1| SSU ribosomal protein S1P [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 557

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  AL+QA+     +  ++   L+     +  F P   +   P   I++     GK +  
Sbjct: 98  LEKALEQAEIVTGTVTGKVKGGLTVMVNGIRAFLPGSLVDTRP---IKDTSPYEGKTMEF 154

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     E  + ++++ E   +  G V  + D+GAF
Sbjct: 155 KVIKLDRKRN-----NVVLSRRAVVEASQGEERAKLMSNLKEGA-VVTGLVKNITDYGAF 208

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ L+  RV   S+++  G  V  K+L FD ++ ++ L +K +  +  
Sbjct: 209 VDL-GGIDGLLHITDLAWRRVRHPSEMLTVGQEVTAKILKFDQEKNRVSLGVKQLGDDPW 267



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      G +  + DFG F+   G  D
Sbjct: 333 LDIDEDKRRISLGIKQCKAN----PWEEFARSQQKGDKLSGAIKSITDFGVFIGLPGGID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS        + V   K+GD V   +L  D ++ +I L +K +  + 
Sbjct: 389 GLVHLSDLSWNEPG--EEAVKKYKKGDEVEATVLAIDVEKERISLGIKQLSGDP 440



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I      N    G+V  + D+GAFV      +GLVH+S++    +    S     
Sbjct: 265 DPWVGIARRYPPNTRLFGKVTNLTDYGAFVEIESGIEGLVHVSEMDWTNKNVAPSKATAL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V V +LD D D+ +I L +K    N  + 
Sbjct: 325 GTEVEVMVLDIDEDKRRISLGIKQCKANPWEE 356



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T V +   +  G V  V   GA +H     +  +  S++ST+RV    +V+KEG
Sbjct: 439 DPFNNYTSVSDKGSLVTGTVKAVDAKGATIHLADEVEAYLRASEISTDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D+V   +++ D + + I LS+K  D
Sbjct: 499 DSVTAMIINIDRKSRVINLSIKAKD 523


>gi|126172391|ref|YP_001048540.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS155]
 gi|125995596|gb|ABN59671.1| RNA binding S1 domain protein [Shewanella baltica OS155]
          Length = 787

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS L+ + ++    VVK GD V VK+++ 
Sbjct: 654 KPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTVVKAGDVVKVKVMEV 713

Query: 678 D-DRGKIKLSMK---VVDQN 693
           D +R +I LSM+    +DQ+
Sbjct: 714 DVERRRIGLSMRLDEAIDQS 733


>gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 503

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G +  +  FGAFV     RDGLVHIS+LS  RVA+  D VK GD V V++LD 
Sbjct: 319 EKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARVEDAVKVGDKVQVRVLDV 378

Query: 678 DDR-GKIKLSMKVVD 691
           D +  +I LS+++ D
Sbjct: 379 DPQSKRISLSLRLED 393



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           S  A  EA     R + D+    ++ +G+V  +  +G FV     RDGLVHIS++S  R+
Sbjct: 118 SYQAPAEAPTGRPRRVKDLAPGMEL-EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRI 176

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVD 691
              SD+VK GDTV V++   +  G +I L+M++ +
Sbjct: 177 ESPSDLVKIGDTVKVRVKSVEPDGRRISLTMRMKE 211



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--------------- 585
              ++L      + +  I  D     IG+G   +  I E +  ++               
Sbjct: 137 APGMELEGRVTSIALYGIFVD-----IGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKV 191

Query: 586 ---NIDDDGTVKIASSSLAEIEAA------REMIRSITDVPEVNKI---YKGQVVKVMDF 633
              +++ DG     +  + E  A       ++      D     ++    +G V  +  F
Sbjct: 192 RVKSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVEGTVTGLAPF 251

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVD 691
           G FV     +DGLVH+S+L+  RV K  DVV+ G T   K+L+ D  G +I LS++   
Sbjct: 252 GVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGARISLSLRRAQ 310


>gi|326330770|ref|ZP_08197072.1| S1 RNA binding domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325951453|gb|EGD43491.1| S1 RNA binding domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 811

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            + +G V  V  FGAF+     +DGLVHIS +S + V    DVV+ GD V VK+L+ D+ 
Sbjct: 707 MVLEGTVTNVAAFGAFIDIGVHQDGLVHISAMSDKFVEDPRDVVRSGDVVRVKVLEVDEA 766

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L++++ D+  
Sbjct: 767 RKRISLTLRLNDEAP 781


>gi|260581014|ref|ZP_05848837.1| transcription accessory protein [Haemophilus influenzae RdAW]
 gi|260092373|gb|EEW76313.1| transcription accessory protein [Haemophilus influenzae RdAW]
          Length = 770

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYK 624
           +V Q  AK  ID+   +        E+E      R                  +   I +
Sbjct: 596 VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILE 655

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R +I
Sbjct: 656 GTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRI 715

Query: 684 KLSMKVVDQNTGK 696
            L+M+ +D++  K
Sbjct: 716 ALTMR-LDESAVK 727


>gi|226953702|ref|ZP_03824166.1| RNA binding protein [Acinetobacter sp. ATCC 27244]
 gi|226835574|gb|EEH67957.1| RNA binding protein [Acinetobacter sp. ATCC 27244]
          Length = 784

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 20/141 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A   +DD   +      LAE+E               RE 
Sbjct: 578 VKDIIGNT-----EIIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 632

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 633 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPHKVVKPGQI 691

Query: 670 VWVKLLDFD-DRGKIKLSMKV 689
           V V+++  D +R ++ LSM+ 
Sbjct: 692 VQVRVMQVDVERNRVNLSMRA 712


>gi|205371987|ref|ZP_03224805.1| hypothetical protein Bcoam_00456 [Bacillus coahuilensis m4-4]
          Length = 152

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 46/80 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   +D +K GD V VK+L+ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVTVKVLNV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           +  GKI LS++       +P
Sbjct: 64  ESDGKIGLSIRKAVDKPERP 83


>gi|203287593|ref|YP_002222608.1| 30S ribosomal protein S1 [Borrelia recurrentis A1]
 gi|201084813|gb|ACH94387.1| 30S ribosomal protein S1 [Borrelia recurrentis A1]
          Length = 555

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIAS-----SSLAEIEAARE--MIRSITDVPEVNKIYKGQVVKV 630
           VE     +++DD   +KI         +     A +     S+    +V  I KG++VK+
Sbjct: 225 VENVEDFIHVDDKLRLKIIKLSTNTGKMELSLKALKVNPWDSVESKYKVESIVKGKIVKI 284

Query: 631 MDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
           + FGA V    A  G +HIS  S  R +    ++VK G  V VK+L+ D    KI L +K
Sbjct: 285 LPFGAVVEIDSAISGFLHISNFSWVRSIKSPQELVKVGQIVEVKILEIDKENQKISLGIK 344

Query: 689 VVDQNTGKPIV 699
            V++N    + 
Sbjct: 345 QVNENPWNNLA 355



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            +VE    + +  D   + +   +L       +    ++   E   I  G V K+ D+GA
Sbjct: 145 SVVEFYVIQADKSDGLRLILDRRTLEREREFLKRKELVSSYSEG-DIVDGIVEKITDYGA 203

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNT 694
            +       G++H   ++  RV    D +   D + +K++    + GK++LS+K +  N 
Sbjct: 204 IIRIKNLVLGVLHKRNIAFNRVENVEDFIHVDDKLRLKIIKLSTNTGKMELSLKALKVNP 263

Query: 695 GKPI 698
              +
Sbjct: 264 WDSV 267



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +   GAFV      D  +    +S           + G ++  K+++FD  R  IKL +
Sbjct: 370 NITKTGAFVSIEEGIDAYISKFDISWVEEVNPEKYFELGSSISGKVIEFDAKRQNIKLGI 429

Query: 688 KVVDQNTGKP 697
           K +++N    
Sbjct: 430 KQLEENPWDD 439



 Score = 37.2 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P++   +    G  I G V +  AK        +K+    L E           +   
Sbjct: 399 VNPEKYFEL----GSSISGKVIEFDAKRQ-----NIKLGIKQLEEN-----PWDDFSKSY 444

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS--DVVKEGDTVWVKLL 675
           +   + + ++++    G  V   G   G +   QL   + +     + +  GD + V + 
Sbjct: 445 KKGDVLEVEIMEKRSKGVQVRVYGKIMGFISKIQLGDTKESSLETFEKLNVGDKIKVIIT 504

Query: 676 DFDDRGK-IKLSMKV-VDQNTGKPI 698
           + D + K + LS K   +Q + + I
Sbjct: 505 NIDFKNKLVLLSYKAYKEQKSSEEI 529


>gi|295835561|ref|ZP_06822494.1| transcriptional accessory protein [Streptomyces sp. SPB74]
 gi|295825552|gb|EFG64308.1| transcriptional accessory protein [Streptomyces sp. SPB74]
          Length = 866

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V  FGAFV     +DGLVH+S LS E V    +VVK GD V VK+LD 
Sbjct: 795 EPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKVKVLDV 854

Query: 678 D-DRGKIKLSMK 688
           D  R +I L+++
Sbjct: 855 DLPRKRISLTLR 866


>gi|325962327|ref|YP_004240233.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468414|gb|ADX72099.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Arthrobacter phenanthrenivorans Sphe3]
          Length = 805

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A   A            +   + +G V  V  FGAFV     +DG
Sbjct: 629 DILSELDKPGRDPRPAFAAATFSEGIEKISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDG 688

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           LVH+S +S   V+   +VVK G  V VK+L+ D DR +I L++++ D+ T 
Sbjct: 689 LVHVSAMSNRFVSDPREVVKSGQVVRVKVLEADPDRKRISLTLRLDDEPTA 739


>gi|299768512|ref|YP_003730538.1| transcriptional accessory protein [Acinetobacter sp. DR1]
 gi|298698600|gb|ADI89165.1| transcriptional accessory protein [Acinetobacter sp. DR1]
          Length = 782

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 18/140 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           ++++IG        I+ Q  A   +DD   +      LAE+E      R   R+     +
Sbjct: 578 VKDIIGNT-----EIIRQVKADEFVDDKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 632

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + ++         +G +  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  V
Sbjct: 633 ITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIV 692

Query: 671 WVKLLDFD-DRGKIKLSMKV 689
            V+++  D +R ++ LSM+ 
Sbjct: 693 QVRVMQVDVERNRVNLSMRA 712


>gi|253576395|ref|ZP_04853725.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844288|gb|EES72306.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 411

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +  +      I  G+V ++++FGAFV      +GLVHISQ+S + +    +V+
Sbjct: 272 AQPGPWDTAAEKFHTGDIVTGEVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPHEVL 331

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           KEG TV VK+LD +    ++ LS+K  ++   
Sbjct: 332 KEGQTVQVKVLDVNPSEKRVSLSIKETEEAPA 363



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCG 641
            KV   D    K+  S    ++   E  +       +  ++ +G V ++  FGAFV   G
Sbjct: 164 VKVKELDRENNKVILSQKDVLDEEFEANKQKVMAELKEGQVLEGTVQRLTQFGAFVDV-G 222

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             DGLVH+S+++   V K +DV+ EGD V VK+L  D ++GKI LS+K       
Sbjct: 223 GVDGLVHVSEIAWNHVDKPADVLSEGDKVKVKVLKVDPEKGKISLSIKAAQPGPW 277



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               E A +         +     KG +VK+ D  A+V      DG++ I +LS+  +  
Sbjct: 9   QEAAEVASQDEMEQIVSLKKGDTVKGTIVKIEDNQAYVSIGYKYDGVIPIRELSSVHLDN 68

Query: 660 TSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD-QNTGKPI 698
            +D V+ G  V  K++  DD + ++ LS + +D +N  + +
Sbjct: 69  AADAVQVGQEVETKVVSIDDEKERLVLSKRAIDSENAWEEL 109


>gi|299137090|ref|ZP_07030273.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
 gi|298601605|gb|EFI57760.1| Tex-like protein-like protein [Acidobacterium sp. MP5ACTX8]
          Length = 752

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T    +I ++            + AA           +   + +G V  V  FGAF+   
Sbjct: 606 TFTLQDILEELKKPGRDPRDQFVAAAFNESVRELSDVQPGMVLEGVVTNVTKFGAFIDIG 665

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVD-QNTGKP 697
             +DGLVHIS++S   +   S+V+K G  V  K+L  D +  +I LS+K +   ++ KP
Sbjct: 666 VHQDGLVHISEISNRFIKDPSEVLKAGQIVKAKVLTADTKTKRIALSIKALQAPSSPKP 724


>gi|86355758|ref|YP_467650.1| 30S ribosomal protein S1 [Rhizobium etli CFN 42]
 gi|86279860|gb|ABC88923.1| 30S ribosomal protein S1 [Rhizobium etli CFN 42]
          Length = 567

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    I  E      E R++   F        +  D     +      IR I +
Sbjct: 91  SREKARREESWIKLEAKFEAGE-RVEGVIFNQVKGGFTVDLDGAIAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++  G V  + 
Sbjct: 150 VTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVDGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIQAKYPEGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                       +          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVEVVVLEVDPSKRRISLGLKQTLENPWAAFARSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G V  + D+GAFV      +GL+HIS++S  ++      ++     V V +L
Sbjct: 281 PEGKKI-SGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVEVVVL 339

Query: 676 DFDD-RGKIKLSMKVVDQNTG 695
           + D  + +I L +K   +N  
Sbjct: 340 EVDPSKRRISLGLKQTLENPW 360



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ + D G  V      D    +  + L+ +R  +  +    G  V  ++ +F  
Sbjct: 461 VVSCEVIAINDGGVEVKLVNHEDITSFIRRADLARDRDEQRPERFSVGQVVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI LS+K ++    K  V
Sbjct: 521 KDRKIMLSIKALEIAEEKEAV 541


>gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
 gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
          Length = 443

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 88/201 (43%), Gaps = 6/201 (2%)

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
            +G   + +D      +   +    +        ++N     L  +   +  F P  +++
Sbjct: 104 QAGQAILSIDRARQEKTWRRLQEVFEAGGVIEAEVVNYNKGGLLVNLDGIRGFVPASQVV 163

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-TD 615
           AI   +  + +     + R + ++   K+   +    ++  S    ++  R+ +++   +
Sbjct: 164 AI---RGGDEVSKQADMARMVGQRLKLKIIEINRHRNRLILSERQAVQEQRDAMKAQLIE 220

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                +  +G+V  + DFG FV   GA DGLVH+S++S  RV   S+V++ GD V V +L
Sbjct: 221 TLREGETRRGRVTSIADFGVFVDIGGA-DGLVHLSEISWTRVKHPSEVLRVGDEVDVMVL 279

Query: 676 DFD-DRGKIKLSMKVVDQNTG 695
             + ++ KI LS++       
Sbjct: 280 SVNPEQRKIALSIRRTQPEPW 300



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 126/331 (38%), Gaps = 30/331 (9%)

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP-QTAQFPYTLRIVSEITESDGSSSM 438
           F   +  E+ R+    R  +   +   +A   +L    A+   T R + E+ E+ G    
Sbjct: 77  FQTLSPEELGRLRPGDRVLVFVLQPEDQAGQAILSIDRARQEKTWRRLQEVFEAGGVIEA 136

Query: 439 ATVC---GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
             V    G  L  +D    I   V    +  ++ GD+    +D+                
Sbjct: 137 EVVNYNKGGLLVNLDG---IRGFVPASQVVAIRGGDEVSKQADM---------ARMVGQR 184

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
               I  +        +SE   V   + A + +L       +        + +F      
Sbjct: 185 LKLKIIEINRHRNRLILSERQAVQEQRDAMKAQLIETLREGETRRGRVTSIADF-----G 239

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------E 608
           + +       ++ +  ++    V+     + + D+  V + S +  + + A        E
Sbjct: 240 VFVDIGGADGLVHLS-EISWTRVKHPSEVLRVGDEVDVMVLSVNPEQRKIALSIRRTQPE 298

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +    +V ++ +G + ++  FGAF       +GL+H+S+L+  RV   ++V++EGD
Sbjct: 299 PWMQVASQFQVGQVVRGTITQLASFGAFARLQEGVEGLIHVSELAGWRVEHPNEVLQEGD 358

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            V V+++  D  R +I LS++   + + + +
Sbjct: 359 DVIVRVIRIDPARRRIGLSLRRALEISDEEL 389


>gi|190889734|ref|YP_001976276.1| 30S ribosomal protein S1 [Rhizobium etli CIAT 652]
 gi|190695013|gb|ACE89098.1| 30S ribosomal protein S1 [Rhizobium etli CIAT 652]
          Length = 567

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           + ++A+R    I  E      E R++   F        +  D     +      IR I +
Sbjct: 91  SREKARREESWIKLEAKFEAGE-RVEGVIFNQVKGGFTVDLDGAIAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++  G V  + 
Sbjct: 150 VTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVDGVVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 ESDPW 273



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIQAKYPEGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                       +          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVEVVVLEVDPSKRRISLGLKQTLENPWAAFARSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G V  + D+GAFV      +GL+HIS++S  ++      ++     V V +L
Sbjct: 281 PEGKKI-SGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVEVVVL 339

Query: 676 DFDD-RGKIKLSMKVVDQNTG 695
           + D  + +I L +K   +N  
Sbjct: 340 EVDPSKRRISLGLKQTLENPW 360



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +++ + D G  V      D    +  + L+ +R  +  +    G  V  ++ +F  
Sbjct: 461 VVSCEIIAINDGGVEVKLVNHEDITSFIRRADLARDRDEQRPERFSVGQVVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI LS+K ++    K  V
Sbjct: 521 KDRKIMLSIKALEIAEEKEAV 541


>gi|152975021|ref|YP_001374538.1| 30S ribosomal protein S1 [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023773|gb|ABS21543.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 382

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E E   +   +I+ + 
Sbjct: 133 VEVHYVEDFTEYKGKTLAVKIVELDR-----EKNRVILSHKAVVEQELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + SDV+++G  V VK+L  
Sbjct: 188 EG-EIVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVGQPSDVLEQGQKVKVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D D  +I LS+K       +
Sbjct: 246 DADTQRISLSIKAAAPGPWE 265



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA      + D  +V  + +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AAPGPWEHVADEIKVGDVREGTVNRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+ +    +I LS+K   + 
Sbjct: 319 EIGQEVKVKVLEVNAAEKRISLSIKEALEE 348



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I  G V+KV +    V+     DG++ IS+L+   + K SDVV+   T+ +K++  
Sbjct: 16  QVGDIVTGSVIKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVEVDQTLELKVIKL 75

Query: 678 DDRGKIKLSMKVVDQN 693
           ++   + LS + VD  
Sbjct: 76  EEDDLV-LSKRAVDAE 90


>gi|110635932|ref|YP_676140.1| 30S ribosomal protein S1 [Mesorhizobium sp. BNC1]
 gi|110286916|gb|ABG64975.1| SSU ribosomal protein S1P [Chelativorans sp. BNC1]
          Length = 569

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 60/109 (55%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVEGVVKNITDYGAFVDL-GGIDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   ++++  G TV V+++  + +  +I L MK ++ +  + I
Sbjct: 228 DMAWRRVNHPTEILNIGQTVKVQIIRINQETHRISLGMKQLESDPWEGI 276



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              +      V  + +G+V    +FG F+   G  DG+VH+S L   R   +  +    G
Sbjct: 359 PWEAFARNHPVGSVVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWSRPGEQVIEEYNRG 418

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           D V  ++LD D ++ +I L +K +    G+ +V
Sbjct: 419 DMVKAQVLDVDIEKERISLGIKQL----GRDVV 447



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     + K  +G+V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWEGIGGKYPLGKKVQGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 TQEVEVVVLEVDPVKRRISLGLKQTLENPWE 361



 Score = 44.5 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+ V D G  V       +  +  S LS +R  +  +    G  V  ++  FD +
Sbjct: 461 VVTCEVIGVRDAGLDVRLVDHDIESFIKRSDLSRDRDEQRPERFAVGQKVDARVTQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+ +S+K ++    K  V
Sbjct: 521 SRKLSVSIKALEIAEEKEAV 540


>gi|327399484|ref|YP_004340353.1| RNA-binding S1 domain-containing protein [Hippea maritima DSM
           10411]
 gi|327182113|gb|AEA34294.1| RNA binding S1 domain protein [Hippea maritima DSM 10411]
          Length = 517

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 19/232 (8%)

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
           I   E      +  V   D             G    I+  A       R+   N++ + 
Sbjct: 51  IKAREFMDDDGNLNVKVGDEIEAVFFNRTDPDGF--EILSKAAA----DRIKGWNKVKQA 104

Query: 539 LSESRLQLGEFTPRVEI-MAIPPDQIRNVIGMGGKVIRGIV--------EQTGAKVNIDD 589
             E +   G+    V     +  D     +      ++ I         E     VNI++
Sbjct: 105 YKEGKTIKGKINSVVNGGFTVKIDGFLAFLPGSQVELKPIKNYPSYVGKEFEFKVVNINE 164

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
                + S  +   E  R+  + + +  +   I KG+V  + D+G FV   G  DGLVHI
Sbjct: 165 SKRNAVLSRKVLLEEEERQRQQELWEKIKEGAILKGRVKNITDYGVFVDL-GGVDGLVHI 223

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDD---RGKIKLSMKVVDQNTGKPI 698
           + +S  RV+  S++V   D V VK++  ++   + KI L MK + ++  K I
Sbjct: 224 TDMSYSRVSHPSELVNLDDEVEVKIIKIEENEGKKKIYLGMKQLSEDPWKNI 275



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            +      +    I ++   K+   D    +++ S         + I       +   I 
Sbjct: 316 YDKYPPKFEETYKIGDEVDVKITNIDKENRRMSLSIKQTKPYPWDNIEENY---KPGDIV 372

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + DFG FV      +GL+H + LS ++  K    +K  DT+  K+L+ D ++ +
Sbjct: 373 EGVVTGIKDFGIFVKLQEGVEGLIHENDLSWDKEDKPQINLK--DTIKAKVLNIDKEKER 430

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K + ++  + I
Sbjct: 431 IALGLKQLTKDPWEDI 446



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA------ 606
           ++   I       V G+  +      ++   ++N+ D    K+ +    +   A      
Sbjct: 379 IKDFGIFVKLQEGVEGLIHENDLSWDKEDKPQINLKDTIKAKVLNIDKEKERIALGLKQL 438

Query: 607 -REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++    I     V    + +VV V  FGAFV      + LV  S+ +  +        +
Sbjct: 439 TKDPWEDIDKKYSVGDEIEARVVSVKPFGAFVKIEKGVESLVPKSEFNNIQP-------Q 491

Query: 666 EGDTVWVKLLDFDDRGK 682
             +TV ++++  D   K
Sbjct: 492 IDETVKIRIIRIDKDKK 508


>gi|241764598|ref|ZP_04762614.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN]
 gi|241365961|gb|EER60587.1| RNA binding S1 domain protein [Acidovorax delafieldii 2AN]
          Length = 789

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK GD V 
Sbjct: 656 EDIKDLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVNDAREVVKTGDIVK 715

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK+++ D +R +I LSMK +D    +
Sbjct: 716 VKVMEVDVERKRIGLSMK-LDAAPPR 740


>gi|229087412|ref|ZP_04219546.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
 gi|228695834|gb|EEL48685.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
          Length = 131

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 27  IVKGKVTGIQDYGAFVALDQETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 86

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ IV
Sbjct: 87  RKMSLSLKAAKRKQGRIIV 105


>gi|145631752|ref|ZP_01787513.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
 gi|144982613|gb|EDJ90159.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
          Length = 770

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYK 624
           +V Q  AK  ID+   +        E+E      R                  +   I +
Sbjct: 596 VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILE 655

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R +I
Sbjct: 656 GTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRI 715

Query: 684 KLSMKVVDQNTGK 696
            L+M+ +D++  K
Sbjct: 716 ALTMR-LDESAVK 727


>gi|229154014|ref|ZP_04282143.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 4342]
 gi|228629535|gb|EEK86233.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 4342]
          Length = 722

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSQETGVGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|182414675|ref|YP_001819741.1| ribosomal protein S1 [Opitutus terrae PB90-1]
 gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1]
          Length = 557

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   I   PP  +   +G          +    K+N++    V      + E   
Sbjct: 122 VDAFMPASHIDVQPPKNLDQYVGQT-------YDFKVLKINLERKNIVLSRRELIEEQRT 174

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            +      +  P   +I +G V  + DFGAF+   G  DGL+HI+ +S  R++  S+++K
Sbjct: 175 NKRRALLDSIQP--GQIRRGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRISHPSEMLK 231

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +G+ V V +++ + ++ ++ L +K   +N    I
Sbjct: 232 QGEEVQVMIIEVNREKERVSLGLKQTTKNPWDEI 265



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    I     +  +  G V K+  FGAFV      DGLVHISQ+S ER+ K  DV+K
Sbjct: 432 ATDPWSDIDAHFRIGDVVTGTVTKLTSFGAFVELKDGIDGLVHISQISEERIDKVKDVLK 491

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            G  V  +++  D +  ++ LS+K  +
Sbjct: 492 PGQQVTARVIKIDREERRLGLSIKAAN 518



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 35/274 (12%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AL+D+  P       I  G+VK+  DF    D+ G           +     G  +   +
Sbjct: 179 ALLDSIQP-----GQIRRGVVKNITDFGAFIDLDG-----MDGLLHITDMSWGRISHPSE 228

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPD 561
           M   G    +M++ + + K      L    +       ++    P    +      + P 
Sbjct: 229 MLKQGEEVQVMIIEVNREKERVSLGL---KQTTKNPWDEIDRKYPVGAKVHGKVVNLVPY 285

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE------------- 608
                I  G + +  I E +  K        +K+     A +   ++             
Sbjct: 286 GAFVEIEPGVEGLVHITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLE 345

Query: 609 --MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVK 665
                 +     +    +G+V  +  +GAF+      DG+VH+S +S  R V   S+++K
Sbjct: 346 PNPWDMVRHNYPIGARVRGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEILK 405

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           +GD V   +LD D  + +I L MK +  +    I
Sbjct: 406 KGDEVDAIVLDVDPQQQRISLGMKQLATDPWSDI 439


>gi|168210098|ref|ZP_02635723.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711795|gb|EDT23977.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
          Length = 720

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|110800077|ref|YP_696847.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110674724|gb|ABG83711.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 720

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  G V  V DFGAFV     +DGLVH SQ++   V    D+VK GD V V
Sbjct: 641 EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVEV 700

Query: 673 KLLDFD-DRGKIKLSMK 688
           ++LD D  R +I LSMK
Sbjct: 701 RILDVDLKRKRISLSMK 717


>gi|319793772|ref|YP_004155412.1| RNAase H [Variovorax paradoxus EPS]
 gi|315596235|gb|ADU37301.1| Tex-like protein protein-like protein [Variovorax paradoxus EPS]
          Length = 791

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK GD V VK+++ D  
Sbjct: 672 MILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDVA 731

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSMK +D    +
Sbjct: 732 RKRIGLSMK-LDAAPAR 747


>gi|300703935|ref|YP_003745537.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
 gi|299071598|emb|CBJ42922.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
          Length = 780

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 14/172 (8%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI-RGIVEQTGAK------VN 586
           + S V  E+   +     RV         I +V+G    +      E T  K      V+
Sbjct: 577 DRSSVHPEAYPVVQRILERV------KKGIGDVLGNREALRGLTAQEFTDDKFGLPTVVD 630

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +              A  +         +   + +G V  V  FGAF+     +DGL
Sbjct: 631 ILGELEKPGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVAAFGAFIDIGVHQDGL 690

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+    P
Sbjct: 691 VHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLSDEPGQAP 742


>gi|229829150|ref|ZP_04455219.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM
           14600]
 gi|229792313|gb|EEP28427.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM
           14600]
          Length = 368

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 14/190 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------K 572
            ++    R  IL E    + +  L+  +    +E            + +GG        +
Sbjct: 162 RRRIIGNRKMILVERKSEIQKDLLEKLKVGDIIEGTIKNITDFGAFVDLGGIDGLLHISE 221

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-----EAAREMIRSITDVPEVNKIYKGQV 627
           +  G VE      N+DD   V I   +  +I      A        ++   V  +  G+V
Sbjct: 222 MSWGRVENPRKVFNVDDKVRVFIKEINGTKIALSRKFADENPWNGASEKFAVGTVVAGKV 281

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
            ++ DFGAF+      D L+H+SQ+S + V K SD++  G  V   +++F +   KI LS
Sbjct: 282 ARMTDFGAFIELAPGIDALLHVSQISKDHVDKPSDILSVGQEVTAVIVEFREADHKISLS 341

Query: 687 MKVVDQNTGK 696
           MK +D +  +
Sbjct: 342 MKALDDSNSR 351



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G ++ V      ++     DG++  S  S +     + + K G
Sbjct: 5   QMLEESLKTIRNGEVVEGTILSVKPDEIILNIGYKSDGVILRSDYSNDSNLDLTTLHKVG 64

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+   +    D  G++ LS K + Q  G
Sbjct: 65  DTMEAVVTKVNDGEGQVSLSYKRLLQEKG 93


>gi|148379145|ref|YP_001253686.1| ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502]
 gi|148288629|emb|CAL82710.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 3502]
          Length = 381

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G++++ 
Sbjct: 98  LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKGEMVK- 153

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + E   +    + +  E  +  +G V ++  FGAF
Sbjct: 154 -----GRLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAF 208

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V ++  
Sbjct: 209 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPW 267



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       ++   ++ D   V  + +G +
Sbjct: 225 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTI 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 285 VKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 344

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 345 IKEATEKPKED 355



 Score = 41.4 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++   E I S        ++ KG+V+ V D  A ++     DG++   ++         D
Sbjct: 1   MKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKD 60

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           ++ + D + V +L+  D  G + LS K  +
Sbjct: 61  IISKDDVISVCVLEVNDGEGNVLLSKKKAE 90


>gi|319898285|ref|YP_004158378.1| 30S ribosomal protein S1 [Bartonella clarridgeiae 73]
 gi|319402249|emb|CBI75782.1| 30S ribosomal protein S1 [Bartonella clarridgeiae 73]
          Length = 566

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +V++ ++A+R    I  E     + +R++   F        +  D     +      IR 
Sbjct: 88  VVLSREKARREESWIRLEEK-FNAGTRVEGVIFNQVKGGFTVDLDGAIAFLPRSQVDIRP 146

Query: 577 IVE----------QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I +              K++      V    + L E  A  E    I    E N+I +G 
Sbjct: 147 IRDAAPLMHNSQLFEILKMDRRRGNIVVSRRTVLEENRA--EQRLEIVQNLEENQIVEGI 204

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  + D+GAFV   G  DGL+H++ ++  R+   S+++  G  + V+++  + +  +I L
Sbjct: 205 VKNITDYGAFVDL-GGIDGLLHVTDMAWRRINHPSEILTIGQNIKVQIIRINQETHRISL 263

Query: 686 SMKVVDQNTGKPI 698
            MK ++ +    I
Sbjct: 264 GMKQLENDPWDSI 276



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI     + K   G V  + D+G FV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWDSINTKYPIGKKITGSVTNITDYGGFVEIEPGIEGLIHVSEMSWTKKNVHPGKLLST 330

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K   +N  
Sbjct: 331 SQEVEVVVLEIDSSKRRISLGLKQTSENPW 360



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +  ++K+  I          
Sbjct: 203 GIVKNITDYGAFVDLGGIDGLLHVTDMAWRRINHPSEILTIGQNIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ ++    +    P  + +      I +      I  G + +  +
Sbjct: 253 RINQETHRISLGMKQLENDPWDSINTKYPIGKKITGSVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     +  +      +                 +     +  +   VN  
Sbjct: 313 SEMSWTKKNVHPGKLLSTSQEVEVVVLEIDSSKRRISLGLKQTSENPWVAFANKFPVNSK 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
             G+V    +FG F+   G  DG+VH+S L   R   +  D   +GDTV   +LD D ++
Sbjct: 373 ITGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIDTYNKGDTVQAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I   +V+ + + G  V       +  +  + L+ +R  +  +    G  V  ++  FD +
Sbjct: 461 IVTCEVIGINENGVDVKLIEHDLEVTIRRTDLTRDRDEQRPERFSIGQKVDAQVTAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + + +S+K ++    K  V
Sbjct: 521 TRKLSVSIKALEIKEEKEAV 540


>gi|312129985|ref|YP_003997325.1| tex-like protein [Leadbetterella byssophila DSM 17132]
 gi|311906531|gb|ADQ16972.1| Tex-like protein [Leadbetterella byssophila DSM 17132]
          Length = 706

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 12/189 (6%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S   +    +  ++        +    +E  L      P    +     +   V      
Sbjct: 517 SRKDLKKVPRLGEKVFEQAAGFLRIHGAEHPLDNTAVHPESYHLVEKMAKDLKVDLKSFI 576

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE-----------VNK 621
             + + E+   K  + D   +      + EI+      R   +  E           V  
Sbjct: 577 ASKELQEKVDIKAYVTDKIGLPTLRDIMEEIKKPGRDPREAFEAFEFADVNSIEDLKVGM 636

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G V  +  FG FV     +DGLVH+S L+   V   ++VVK    V  K+L+ D  R
Sbjct: 637 ILPGVVTNITAFGCFVDVGVHQDGLVHVSHLANRFVKDPNEVVKVHQKVKAKVLEVDVPR 696

Query: 681 GKIKLSMKV 689
            +I LS+K 
Sbjct: 697 KRISLSLKE 705


>gi|297621095|ref|YP_003709232.1| 30S ribosomal protein S1 [Waddlia chondrophila WSU 86-1044]
 gi|297376396|gb|ADI38226.1| 30S ribosomal protein S1 [Waddlia chondrophila WSU 86-1044]
          Length = 568

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
              I    + I    E    K+NID    V      L     +++     T       I 
Sbjct: 162 NKRIKNLDEYIGQTYEFKILKINIDRKNVVVSRRELLEAERISKKAELLATISE--GDIR 219

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + DFG F+      DGL+HI+ ++ +R+   S++VK GD + V +L  D D+G+
Sbjct: 220 EGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVKIGDKLEVMILSVDRDKGR 278

Query: 683 IKLSMKVVDQNTGKPI 698
           + L +K  + N    I
Sbjct: 279 VALGLKQKESNPWDEI 294



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 40/264 (15%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G+VK+  DF +  D+ G +   H+  M +K     S +  +           + + +
Sbjct: 218 IREGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVKIG----------DKLEV 267

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV------ 573
            +    R +  +   + +  S    ++ +  P    +     +I N++  G  +      
Sbjct: 268 MILSVDRDKGRVALGLKQKESNPWDEIEQKYPPGTRVK---GKIVNLLSYGAFIEIEDGI 324

Query: 574 --IRGIVEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDV 616
             +  + E +  K   D    V       A +               +  R     + + 
Sbjct: 325 EGLIHVSEMSWVKNVTDPSEVVNKGDEVEAIVLSVQRDEGKISLGIKQTERNPWDEVEEK 384

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
             V+K  K +V  + ++GAFV      +GL+HIS LS  ++V+  S+++K+GD V   +L
Sbjct: 385 YPVDKNVKVEVKSLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEILKKGDMVDAVIL 444

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             D +  KI L +K +  N  + I
Sbjct: 445 SVDKESKKITLGVKQLGSNPWEDI 468



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 21/176 (11%)

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKV---- 585
           + +       ++ E  P  + + +    + N      +  G + +  I + +  K     
Sbjct: 370 IKQTERNPWDEVEEKYPVDKNVKVEVKSLTNYGAFVELEPGVEGLIHISDLSWIKKVSHP 429

Query: 586 -NIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQVVKVMDFG 634
             I   G +  A     + E+ +               I +   ++ I KG V K+  +G
Sbjct: 430 SEILKKGDMVDAVILSVDKESKKITLGVKQLGSNPWEDIKETMPIDSIVKGTVSKITAYG 489

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           AFV      +GL+H+++LS E   K  DVV  G  V  K++  D +  KI LS+K 
Sbjct: 490 AFVELDNGLEGLIHVTELSDEAFGKVEDVVSVGADVTAKVMKVDPEHKKISLSIKE 545



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 16/247 (6%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMA 520
           +  GL+ D      L     D   + ++D  +  T    I  + +D K   +S   ++ A
Sbjct: 141 VKGGLMVDIGMEAFLPGSQLDNKRIKNLDEYIGQTYEFKILKINIDRKNVVVSRRELLEA 200

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            + +K+  L        +       + +F      + +  D I  ++ +     + I   
Sbjct: 201 ERISKKAELLATISEGDIREGIVKNITDF-----GVFLDLDGIDGLLHITDMTWKRI-RH 254

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQVVKVMDF 633
               V I D   V I S    +   A             I          KG++V ++ +
Sbjct: 255 PSEMVKIGDKLEVMILSVDRDKGRVALGLKQKESNPWDEIEQKYPPGTRVKGKIVNLLSY 314

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           GAF+      +GL+H+S++S  + V   S+VV +GD V   +L    D GKI L +K  +
Sbjct: 315 GAFIEIEDGIEGLIHVSEMSWVKNVTDPSEVVNKGDEVEAIVLSVQRDEGKISLGIKQTE 374

Query: 692 QNTGKPI 698
           +N    +
Sbjct: 375 RNPWDEV 381


>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 256

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 93/235 (39%), Gaps = 14/235 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R    Q G +    GS+    G+T+ IV V  G RE ++   ++  +   
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSV-FGPRESKK---AMVFSDVG 89

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
               + ++   A+  + +      +E  +  +  +A+  V+        T+ + + + ES
Sbjct: 90  RLNCNVSYTTFASPTLGQ--GTDHKE--YSSMLHKALEGVIIMETFPKTTVDVFALVLES 145

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  +SLAL DAG+ +   +  +++  +       ++ D   +E+      F 
Sbjct: 146 GGSDLSVVISCASLALADAGIMMYDLITAVSVSCIGKS----LMIDPVTEEEGCEDGSFM 201

Query: 493 VAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           +    S   IT + +  +    + N  +     A      I+ ++ K  + +  +
Sbjct: 202 MTCMPSRYEITQLTVTGEWTTPNINEAMQLCLDACSKLGEIMRDLLKQAASASEE 256



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 21/221 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           RP  L+TG ++  + G+  A +G T V+ +V   R  K    F     L  N    T+A 
Sbjct: 44  RPALLQTGAVSS-ASGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNCNVSYTTFAS 102

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
             +  G   +E          S M+ +++    +     K    V   V++        V
Sbjct: 103 PTLGQGTDHKE---------YSSMLHKALEGVIIMETFPKTTVDVFALVLESGGSDLSVV 153

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAV 185
           +S   AS AL  +G+     +    V  I    +++P  +E   + GS  +    ++  +
Sbjct: 154 ISC--ASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEI 211

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
             + +   + +   + +A+    + C  + E +  L K  A
Sbjct: 212 TQLTVTG-EWTTPNINEAMQLCLDACSKLGEIMRDLLKQAA 251


>gi|194366186|ref|YP_002028796.1| RNA binding S1 domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194348990|gb|ACF52113.1| RNA binding S1 domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 795

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 594 KIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           K       E +AAR  E +  I D+ E   + +G V  V  FGAFV     +DGL+HIS 
Sbjct: 633 KPGRDPRPEFKAARFAEGVEDIKDLREG-MVLEGVVSNVAAFGAFVDIGVHQDGLIHISA 691

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697
           LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D   Q T +P
Sbjct: 692 LSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741


>gi|47567492|ref|ZP_00238204.1| S1 RNA binding domain protein [Bacillus cereus G9241]
 gi|47555894|gb|EAL14233.1| S1 RNA binding domain protein [Bacillus cereus G9241]
          Length = 722

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGTKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSQETGVGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|325123755|gb|ADY83278.1| RNA binding S1 [Acinetobacter calcoaceticus PHEA-2]
          Length = 782

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 18/140 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           ++++IG        I+ Q  A   +DD   +      LAE+E      R   R+     +
Sbjct: 578 VKDIIGNT-----EIIRQVKADEFVDDKFGLPTVQDVLAELEKPGRDPRPEFRTAKFRED 632

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + ++         +G +  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  V
Sbjct: 633 ITEVGQLTEGMQLEGVITNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIV 692

Query: 671 WVKLLDFD-DRGKIKLSMKV 689
            V+++  D +R ++ LSM+ 
Sbjct: 693 QVRVMQVDVERNRVNLSMRA 712


>gi|328850997|gb|EGG00156.1| hypothetical protein MELLADRAFT_93831 [Melampsora larici-populina
           98AG31]
          Length = 462

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVV 664
                +   P + KIY+G V  V D+G FV   G     +G+VH++ +++ R+   SD+V
Sbjct: 224 HRRNPLDPKPILFKIYQGTVTSVKDYGCFVSLEGISERSEGMVHVNLITSTRINHPSDLV 283

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
                V VK++      ++ LSMK VDQNTG  +
Sbjct: 284 SRNQKVKVKVMSIVGT-RLSLSMKDVDQNTGADL 316


>gi|207743011|ref|YP_002259403.1| rna-binding protein [Ralstonia solanacearum IPO1609]
 gi|206594408|emb|CAQ61335.1| putative rna-binding protein [Ralstonia solanacearum IPO1609]
          Length = 180

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I  +              A  +         +   + +G V  V  FGAF+     +D
Sbjct: 29  VDILGELEKPGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVAAFGAFIDIGVHQD 88

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+    P
Sbjct: 89  GLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLTDEPGQAP 142


>gi|207724157|ref|YP_002254555.1| rna-binding protein [Ralstonia solanacearum MolK2]
 gi|206589367|emb|CAQ36329.1| rna-binding protein [Ralstonia solanacearum MolK2]
          Length = 222

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I  +              A  +         +   + +G V  V  FGAF+     +D
Sbjct: 71  VDILGELEKPGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVAAFGAFIDIGVHQD 130

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GLVH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+    P
Sbjct: 131 GLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLTDEPGQAP 184


>gi|153941449|ref|YP_001390506.1| 30S ribosomal protein S1 [Clostridium botulinum F str. Langeland]
 gi|152937345|gb|ABS42843.1| putative 30S ribosomal protein S1 [Clostridium botulinum F str.
           Langeland]
 gi|295318588|gb|ADF98965.1| putative 30S ribosomal protein S1 [Clostridium botulinum F str.
           230613]
          Length = 387

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G+++R 
Sbjct: 104 LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKGEIVR- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + E   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKVVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V ++  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPW 273



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       ++   ++ D   V  + +G +
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTI 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEKLNMGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 351 IKEATEKPKED 361



 Score = 41.4 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|171058545|ref|YP_001790894.1| RNA-binding S1 domain-containing protein [Leptothrix cholodnii
           SP-6]
 gi|170775990|gb|ACB34129.1| RNA binding S1 domain protein [Leptothrix cholodnii SP-6]
          Length = 827

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 45/283 (15%)

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII---LSDIS 480
           R +  + E   +S    +  +S  L+     +S  VA   +        F     L D++
Sbjct: 535 RTLGTVIEDCVNSVGVDLNTASAPLLSRVSGLSGTVAASIVRWRDANGAFRNRKQLLDVA 594

Query: 481 GD-----EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           G      E   G +  +       IT +  +                        ++ +M
Sbjct: 595 GLGPKTFEQAAGFLRIRGGDNPLDITGVHPETYP---------------------VVEKM 633

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVK 594
                    +L   +  ++ +   P+ +      G   ++ I+ +      +   D  V 
Sbjct: 634 IAGTGRPVAELMGRSDVLKTLK--PE-LYATEKFGAITVKDIIAELEKPGRDPRPDFKVA 690

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
             +  + +I+                 + +G V  V  FGAF+     +DGLVH+SQLS 
Sbjct: 691 RFNDGVEDIK-----------DLSEGMVLEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSN 739

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + V    +VVK GD V V++L+ D  R +I L+MK+      K
Sbjct: 740 KFVNDAREVVKTGDIVKVRVLEVDLARKRISLTMKLDAPAQPK 782


>gi|328948657|ref|YP_004365994.1| Cytidylate kinase [Treponema succinifaciens DSM 2489]
 gi|328448981|gb|AEB14697.1| Cytidylate kinase [Treponema succinifaciens DSM 2489]
          Length = 781

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   VN I KG+V KV DFGAF+      +GL HIS+ S  +++ K SD+VKE
Sbjct: 488 DPWVHFEEKYHVNDIVKGKVTKVPDFGAFIELEEGIEGLAHISEFSWTKKINKPSDMVKE 547

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD V   +L +D   G++ L +K V +N    I 
Sbjct: 548 GDEVECMILGYDIQGGRVSLGLKQVTENPWDSIA 581



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +  A   ++   +IG+  K     +  +  K N+     V        +I  
Sbjct: 349 ISAFLPISQADAQKVEKEDKLIGVKSKFYVERL-YSNGKRNV----VVNRRKYLEEQINE 403

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+         ++    KG V     FGAF+   G  DGL+HI+ +S   V +  D VK
Sbjct: 404 NRDKFFETV---KIGDTVKGVVKSFTSFGAFIDLGGF-DGLLHINDMSWGHVTRPKDFVK 459

Query: 666 EGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           +G  + +K++  D  G +I LS+K   ++  
Sbjct: 460 KGQEIELKVIRLDPEGKRINLSLKHFTEDPW 490



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK--- 665
             ++  +   V     G+V  + DFG FV      +GLV+ + LS +R     + VK   
Sbjct: 663 PWKAFAEEYRVGGTLAGEVTSINDFGIFVKAPNGIEGLVNKANLSDDRDVPFEEAVKKYN 722

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            GD V V ++  D D+ ++  S+K 
Sbjct: 723 VGDKVNVYVVSIDVDKERVAFSVKE 747



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              SI D   V     G+VVK+ + GAFV      D  +    LS  +++      +K  
Sbjct: 576 PWDSIADKYPVGTKISGKVVKIANSGAFVQLEEGIDAFLAGEDLSWTKKIKHPGSEIKVD 635

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
             + V +LD D    +I++ +K +  N  K
Sbjct: 636 QPLDVVVLDCDPENHRIRVGVKQLTDNPWK 665


>gi|315634955|ref|ZP_07890236.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
 gi|315476217|gb|EFU66968.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
          Length = 771

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM--AIPPDQIRNVIGMG 570
           S   +    +   +        M      + L      P    +   I     ++++ + 
Sbjct: 532 SREQLKKVPRLGPKAFEQCAGFMRIAAGNNPLDASGVHPEAYPVVEKILQATEQSILDLM 591

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPE 618
           G     +V Q  AK   D+   +        E+E      R                  +
Sbjct: 592 GN--ASLVRQLDAKQFTDEQFGLPTVQDIFKELEKPGRDPRGEFKTATFAEGVEEITDLK 649

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ D
Sbjct: 650 AGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDVVKVKVLEVD 709

Query: 679 -DRGKIKLSMKVVDQNTGK 696
             R +I L+M+ +D++  K
Sbjct: 710 VARRRIALTMR-LDESAVK 727


>gi|294496935|ref|YP_003560635.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|295702302|ref|YP_003595377.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294346872|gb|ADE67201.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
 gi|294799961|gb|ADF37027.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 155

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDEVEVKVINV 63

Query: 678 DDRGKIKLSM-KVVDQ 692
           +  GKI LS+ K VD+
Sbjct: 64  EKDGKIGLSIKKAVDK 79


>gi|190574863|ref|YP_001972708.1| putative transcription accessory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012785|emb|CAQ46414.1| putative transcription accessory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 795

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 594 KIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           K       E +AAR  E +  I D+ E   + +G V  V  FGAFV     +DGL+HIS 
Sbjct: 633 KPGRDPRPEFKAARFAEGVEDIKDLREG-MVLEGVVSNVAAFGAFVDIGVHQDGLIHISA 691

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697
           LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D   Q T +P
Sbjct: 692 LSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741


>gi|295397829|ref|ZP_06807893.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
 gi|294973926|gb|EFG49689.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
          Length = 189

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  +  FGAFV     ++GLVHIS+++   V   +DV+  GD V V + + 
Sbjct: 7   EVGNKVTGKVTGITKFGAFVDLGEGKNGLVHISEVAEGYVKDINDVLSVGDEVTVLVTNV 66

Query: 678 DDRGKIKLSMKVVDQNTG 695
            D GKI LS++ ++ ++ 
Sbjct: 67  ADDGKIALSIRRLNADSA 84


>gi|291009547|ref|ZP_06567520.1| RNA binding S1:resolvase, RNase H-like fold protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 754

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 586 NIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDF 633
            +DD   +   +  LAE+E      R   ++ T    V KI         +G V  V  F
Sbjct: 606 FVDDKFGLPTVTDILAELEKPGRDPRPTFKTATFADGVEKIGDLKPGMRLEGVVTNVAAF 665

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV     +DGLVH+S +S   V+   DVVK GD V VK+LD D  R +I L++++ D+
Sbjct: 666 GAFVDVGVHQDGLVHVSAMSKNFVSDPHDVVKSGDVVRVKVLDVDIPRKRISLTLRLDDE 725

Query: 693 NTG 695
             G
Sbjct: 726 AGG 728


>gi|260898312|ref|ZP_05906808.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
 gi|308089134|gb|EFO38829.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
          Length = 406

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             V ++  ++ E E + E    +  + E +++ KG V  + D+GAFV   G  DGL+HI+
Sbjct: 14  NNVVVSRRAVIESENSVERDELLETLQEGSEV-KGIVKNLTDYGAFVDL-GGVDGLLHIT 71

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++ +RV   S++V  GD + VK+L FD +R ++ L +K + ++    I 
Sbjct: 72  DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIA 121



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 125 PEGHKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 183

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           + D+ R +I L +K    N  +
Sbjct: 184 EIDEERRRISLGLKQCKANPWQ 205



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      + ID++           +        +S  +  
Sbjct: 166 IHPSKVVNV----GDEVEVMV------LEIDEERRRISLGLKQCKAN----PWQSFAEAQ 211

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   VA    V   K+GD +   +L
Sbjct: 212 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VAGEEAVREYKKGDEISAVVL 270

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 271 AVDAERERISLGIKQMENDP 290



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    V  V   GA V      +G +  S++S +RV   S ++  G
Sbjct: 289 DPFNAYVADNKKGTLVNATVTAVDAKGATVEIAEGVEGYIRASEVSRDRVEDASLILSAG 348

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 349 DVVEAKFTGVDRKNRVINLSIKAKDEAEEQE 379


>gi|78188548|ref|YP_378886.1| 30S ribosomal protein S1 [Chlorobium chlorochromatii CaD3]
 gi|78170747|gb|ABB27843.1| SSU ribosomal protein S1P [Chlorobium chlorochromatii CaD3]
          Length = 592

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+N +   ++ S   +  F P  +I   P      ++G         +E    K+N   
Sbjct: 137 KIINRVKGGMTVSLSGVEAFLPGSQIDVKPVRDFDALVGQT-------MEFRVVKINPVT 189

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              V      L E  AAR     +    +V  + +G V  + DFG FV   G  DGLVHI
Sbjct: 190 QNIVVSHKVILEEAYAAR--REEMLANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHI 246

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           + ++  R+   S+VV+    + V ++ FD+   ++ L MK ++ +  + I
Sbjct: 247 TDITWGRINHPSEVVELDQPIKVVVVGFDENSKRVSLGMKQLESHPWENI 296



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G+ +    E     +NID + T    S          +   ++++    N I+KG 
Sbjct: 341 IKHPGQFVTLGQEVECVILNIDKEHTKLSLSMKRVS----EDPWIALSEKYIENSIHKGT 396

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIK 684
           +  + DFG FV      DGLVHIS LS  +++   S++VK+   + VK+L FD    +I 
Sbjct: 397 ISNITDFGVFVELESGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFDVHARRIA 456

Query: 685 LSMKVVDQNTG 695
           L  K ++ +  
Sbjct: 457 LGHKQINPDPW 467



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 92/252 (36%), Gaps = 28/252 (11%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKIGGISENIMVM 519
           G + +     +   +SG E  L      V          G T     +KI  +++NI+V 
Sbjct: 136 GKIINRVKGGMTVSLSGVEAFLPGSQIDVKPVRDFDALVGQTMEFRVVKINPVTQNIVVS 195

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
             +           E      +  + L      +    I  D     +G G   +  I +
Sbjct: 196 H-KVILEEAYAARREEMLANIKVGMVLEGTVKNITDFGIFVD-----LG-GLDGLVHITD 248

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-------KG 625
            T  ++N       +D    V +          +  M +  +   E  +I        +G
Sbjct: 249 ITWGRINHPSEVVELDQPIKVVVVGFDENSKRVSLGMKQLESHPWENIEIKYPVGSKAQG 308

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           +VV + D+GAFV      +GLVHIS++S  + +      V  G  V   +L+ D +  K+
Sbjct: 309 RVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKEHTKL 368

Query: 684 KLSMKVVDQNTG 695
            LSMK V ++  
Sbjct: 369 SLSMKRVSEDPW 380



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           GQ+ ++++ G  V   G  DG V +S L    V       K GD + +++++FD +  +I
Sbjct: 482 GQISQIIEKGVIVILPGDVDGFVPVSHLLQGGVKDIHSSFKIGDELPLRVIEFDKENKRI 541

Query: 684 KLS 686
            LS
Sbjct: 542 ILS 544


>gi|291460402|ref|ZP_06599792.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416969|gb|EFE90688.1| 30S ribosomal protein S1-like protein [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 254

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   V  + +G   + S+     E A ++        EV  + +G+V  + D+GAFV   
Sbjct: 105 TVRVVTAEPEGNRLVLSAKELLREEAEKLRAEKAAKLEVGSVLEGKVESLKDYGAFVDIG 164

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
               GL+H+SQ+S  R+   +DV+KEG +V VK+    D G+I LSMK +
Sbjct: 165 DGVTGLLHVSQISQRRIKTPADVLKEGQSVTVKITAMKD-GRISLSMKEL 213


>gi|154502539|ref|ZP_02039599.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149]
 gi|153796935|gb|EDN79355.1| hypothetical protein RUMGNA_00352 [Ruminococcus gnavus ATCC 29149]
          Length = 358

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D ++   
Sbjct: 280 VTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLSIGQEITAKVVDLNEAEK 339

Query: 682 KIKLSMKVVDQNTGKP 697
           KI LSMK ++ +T + 
Sbjct: 340 KISLSMKALEPDTVEE 355



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   L  +      F P      +     +++    G+ I
Sbjct: 98  ERLREAFENKEVLKATVTQILGGGLCATVEGARVFIPASL---VSDSYEKDLSKYEGQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E  + +    +V    +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAERAEKQKELFAKLQVGDTVEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V + GD V V + D +D  KI LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVENPKKVFQVGDQVKVLVKDINDT-KIALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  S+ S ++    + VV  G
Sbjct: 8   QMLEESFKTIHNGEVVEGTVIDVKPDEIILNIGYKADGIITKSEYSNDQSLDLTTVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D++ VK+L   D  G++ L+ K +    G
Sbjct: 68  DSMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|16077131|ref|NP_387944.1| hypothetical protein BSU00630 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221307873|ref|ZP_03589720.1| hypothetical protein Bsubs1_00320 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312195|ref|ZP_03594000.1| hypothetical protein BsubsN3_00320 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317128|ref|ZP_03598422.1| hypothetical protein BsubsJ_00320 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321391|ref|ZP_03602685.1| hypothetical protein BsubsS_00320 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329565|ref|ZP_06872051.1| hypothetical protein BSU6633_00590 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672762|ref|YP_003864433.1| hypothetical protein BSUW23_00325 [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313733|ref|YP_004206020.1| hypothetical protein BSn5_11885 [Bacillus subtilis BSn5]
 gi|586889|sp|P37560|YABR_BACSU RecName: Full=Uncharacterized protein yabR
 gi|385178|gb|AAB38380.1| unknown [Bacillus subtilis]
 gi|467452|dbj|BAA05298.1| unknown [Bacillus subtilis]
 gi|2632330|emb|CAB11839.1| putative RNA degradation protein; polyribonucleotide
           nucleotidyltransferase or phosphorylase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291482435|dbj|BAI83510.1| hypothetical protein BSNT_00104 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153308|gb|EFG94171.1| hypothetical protein BSU6633_00590 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411005|gb|ADM36123.1| hypothetical protein BSUW23_00325 [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|320020007|gb|ADV94993.1| hypothetical protein BSn5_11885 [Bacillus subtilis BSn5]
          Length = 128

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G++  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSM-KVVDQNTGKP 697
           +  GKI LS+ K  D+   +P
Sbjct: 64  EKDGKIGLSIKKAKDRPQARP 84


>gi|292491394|ref|YP_003526833.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
 gi|291579989|gb|ADE14446.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
          Length = 762

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            + +G V  V  FGAFV     +DGLVHIS L+   V    +VV  GD V VK+L+ D  
Sbjct: 649 MMLEGVVTNVTAFGAFVDIGVHQDGLVHISALADRFVKDPHEVVSAGDIVKVKVLEIDKA 708

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L+M+ + +  GK
Sbjct: 709 RKRIGLTMR-LKEAAGK 724


>gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
 gi|222120499|dbj|BAH17834.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
          Length = 387

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  + I +     G+V+   +E+      +D +    I +  + E E  +       D  
Sbjct: 136 ISTNYIEDFSSYVGQVLTLKIEE------LDQEKNRVILNHKVIEAEENKVKKEQRLDEI 189

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V+++ +FGAFV   G  DGLVHISQ++ + + K  D +  GD V VK+L  
Sbjct: 190 EVGSVIEGEVLRITNFGAFVDI-GEVDGLVHISQITHDHIDKVEDALSIGDKVKVKVLSV 248

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  ++ LSMK       + I
Sbjct: 249 DKEAERVSLSMKAALPGPFETI 270



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-------I 574
           +  +     ILN       E++++  +    +E+ ++   ++  +   G  V       +
Sbjct: 158 ELDQEKNRVILNHKVIEAEENKVKKEQRLDEIEVGSVIEGEVLRITNFGAFVDIGEVDGL 217

Query: 575 RGIVEQTGAKVN-------IDDDGTVKIASSSLAE------IEAARE-MIRSITDVPEVN 620
             I + T   ++       I D   VK+ S           ++AA      +I +   + 
Sbjct: 218 VHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMKAALPGPFETIEEKFSIG 277

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G+VV++ +FGAFV       GLVHISQ+S + +   S+V++ G  V VK+LD + +
Sbjct: 278 DIVDGEVVRLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKE 337

Query: 680 RGKIKLSMKVVDQN 693
             +I LS+K   + 
Sbjct: 338 EKRIGLSIKATQEQ 351



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   ++    +     KG V  + +    ++  GA+ DG++ ISQLS+  +    +VV+ 
Sbjct: 4   EFNEAMIKEIQEGDKVKGTVQAIEEKHVVLNLDGAKYDGIIPISQLSSLHIENAEEVVQI 63

Query: 667 GDTVWVKLLDFDDR---GKIKLSMKVVDQNT 694
           GD +   +   +D+   G   LS + +D++ 
Sbjct: 64  GDEIEAFVTKIEDKEEDGHYILSKRQLDESE 94


>gi|115677377|ref|XP_001203156.1| PREDICTED: similar to ZCCHC17 protein [Strongylocentrotus
           purpuratus]
 gi|115712946|ref|XP_787656.2| PREDICTED: similar to ZCCHC17 protein [Strongylocentrotus
           purpuratus]
          Length = 232

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKL 674
           P +  IYKG+V  +  +GAFV   G  ++GLVH SQ+S  +RV   S+V+  GD VW K+
Sbjct: 5   PALYNIYKGEVASIQSYGAFVKLDGYKKNGLVHKSQISRTKRVEDVSEVLSVGDIVWSKV 64

Query: 675 LDF--DDRGKIKLSMKVVDQNTGKPI 698
           +    D+  KI LSMKVV+Q+ G+ +
Sbjct: 65  ISLGEDEEMKISLSMKVVNQDNGQDL 90


>gi|32035056|ref|ZP_00135122.1| COG2183: Transcriptional accessory protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 727

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +V  I +G V  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 650 EDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVK 709

Query: 672 VKLLDFD-DRGKIKLSMK 688
           VK+L+ D  R +I L+M+
Sbjct: 710 VKVLEVDVQRKRIALTMR 727


>gi|16272511|ref|NP_438725.1| transcription accessory protein [Haemophilus influenzae Rd KW20]
 gi|2501167|sp|P71353|Y568_HAEIN RecName: Full=Uncharacterized protein HI_0568
 gi|1573555|gb|AAC22226.1| transcription accessory protein (tex) [Haemophilus influenzae Rd
           KW20]
          Length = 762

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYK 624
           +V Q  AK  ID+   +        E+E      R                  +   I +
Sbjct: 596 VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILE 655

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R +I
Sbjct: 656 GTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRI 715

Query: 684 KLSMKVVDQNTGK 696
            L+M+ +D++  K
Sbjct: 716 ALTMR-LDESAVK 727


>gi|88798566|ref|ZP_01114150.1| Transcriptional accessory protein [Reinekea sp. MED297]
 gi|88778666|gb|EAR09857.1| Transcriptional accessory protein [Reinekea sp. MED297]
          Length = 775

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           N   +G V  V  FGAFV     +DGLVHIS +S   V   S VVK GD V VK+++ D 
Sbjct: 649 NMTLEGVVTNVTHFGAFVDVGVHQDGLVHISAMSHSFVDDPSSVVKAGDIVKVKVMEVDV 708

Query: 679 DRGKIKLSMKVVD 691
            R +I LSM++ D
Sbjct: 709 ARKRIALSMRLDD 721


>gi|226324699|ref|ZP_03800217.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758]
 gi|225207147|gb|EEG89501.1| hypothetical protein COPCOM_02485 [Coprococcus comes ATCC 27758]
          Length = 359

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G 
Sbjct: 266 PWANAAEKYAVGTVVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLSVGQ 325

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +  K++D ++   KI LSMK ++    + 
Sbjct: 326 EITAKIVDLNEADKKISLSMKALENAEAQE 355



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   LS    +   F P      +     +++     + I
Sbjct: 98  ERLKEAFENKEVLKAPVTQILGGGLSVVVDEARVFIPASL---VSDTYEKDLSKYKDQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E  + +    +V  + +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RIIGDRRQLLVAERAEKQKELFAKLKVGDVIEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V   G+T+ V + D  D  K+ LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVDNPKKVFTVGETLKVLVKDIHDT-KVALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  S+ + +     + VV  G
Sbjct: 8   QMLDESFKTIHNGEVVDGTVIDVKPDEIILNIGYKADGIITRSEYTNDNSVDLTTVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVV 690
           D + VK+L   D  G++ L+ K +
Sbjct: 68  DPMTVKVLKVNDGEGQVLLTYKRL 91


>gi|118380258|ref|XP_001023293.1| ATP-dependent helicase DHX8, RNA helicase HRH1 [Tetrahymena
           thermophila]
 gi|89305060|gb|EAS03048.1| ATP-dependent helicase DHX8, RNA helicase HRH1 [Tetrahymena
           thermophila SB210]
          Length = 1291

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 7/113 (6%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARD 644
           +  G    + S   E +  ++  R      E + I  G V K+ +FG FV      G ++
Sbjct: 293 EKKGRENSSRSRSQEKQTRQQFKR---QEVEKDSILDGVVSKISEFGCFVTLENVGGRKE 349

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           GLVHISQLS++RV    +V + G  V VK++      KI LSMK VDQ TG  
Sbjct: 350 GLVHISQLSSKRVGNIQEVARIGQRVKVKVISVIG-NKISLSMKDVDQITGLD 401


>gi|56311965|emb|CAI06610.1| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
          Length = 591

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E     + +D      + S      E   E    +    +   + KG V  + D+GAFV 
Sbjct: 182 EFEFKVIKLDRKRNNVVVSRRAVLEETMGEEREKLLANLKEGTVIKGIVKNITDYGAFVD 241

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++ ++ L +K + ++  
Sbjct: 242 L-GGIDGLLHITDLAWRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVSLGLKQLGEDPW 298



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VV+ GD V V +L+ D DR +
Sbjct: 313 GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRR 372

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 373 ISLGMKQCMSNPWDD 387



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P +   V+ +G +V   I+E       ID+D                           
Sbjct: 347 IHPTK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQCMSN----PWDDFAINH 392

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
           +     +GQ+  + DFG F+   G  DGLVH+S LS     +   V   K+GD V   +L
Sbjct: 393 KKGDKVRGQIKSITDFGVFIGLDGGIDGLVHLSDLSWSDTGE-EAVRRFKKGDEVEAVVL 451

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 452 AIDVERERISLGVKQLEGDP 471



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     E N I  G V  V   GA +      +G +  S+ +  RV   + V+KEG
Sbjct: 470 DPFTNFIATHEKNSIVGGTVKSVEARGAVIALNEDVEGYLRASEAAAHRVDDLTTVLKEG 529

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
             V V +++ D + + I LS++  DQ
Sbjct: 530 QEVEVMIINVDRKTRSINLSIRAKDQ 555


>gi|302555511|ref|ZP_07307853.1| transcriptional accessory protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302473129|gb|EFL36222.1| transcriptional accessory protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 794

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  
Sbjct: 657 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDVDIP 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L++++ D+
Sbjct: 717 RKRISLTLRLDDE 729


>gi|256391527|ref|YP_003113091.1| RNA binding S1 domain-containing protein [Catenulispora acidiphila
           DSM 44928]
 gi|256357753|gb|ACU71250.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928]
          Length = 838

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKV------NIDDDGTVKIASSSLAEIEAAREMIR----- 611
           +R ++   G  I+ ++  T            DD   V   +  LAE+E      R     
Sbjct: 585 VRRILASTGSGIKELIGDTKTLRALRPAEFADDTFGVPTVTDILAELEKPGRDPRPAFKT 644

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        +   I +G V  V  FGAFV     +DGLVHIS LS   V    DVV
Sbjct: 645 ATFKEGVEKIGDLQPGMILEGVVTNVAAFGAFVDVGVHQDGLVHISALSKTFVKDPRDVV 704

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           K GD V VK+LD D  R +I L++++ D+
Sbjct: 705 KPGDVVRVKVLDVDAVRKRIALTLRLDDE 733


>gi|311113006|ref|YP_003984228.1| transcription accessory protein [Rothia dentocariosa ATCC 17931]
 gi|310944500|gb|ADP40794.1| transcription accessory protein [Rothia dentocariosa ATCC 17931]
          Length = 811

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +     +     V R I E T    +I ++              A      S  +   V 
Sbjct: 665 EDPLTALDPADYVNRSIGEYTV--HDIFEELRRPGRDPRPEFRTAHFSEDISRFEDVTVG 722

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGL+HISQ+S E VA   D+V+ GD V V++++ D  
Sbjct: 723 MVLEGTVSNVAAFGAFVDIGVHQDGLIHISQMSREYVANPHDIVRSGDIVTVRVVEVDAS 782

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LS+ V     G+
Sbjct: 783 RRRISLSLLVDAGEPGR 799


>gi|317128562|ref|YP_004094844.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473510|gb|ADU30113.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 382

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D +    I S      E   E  R      +V  + +G+V ++ DFGAFV   G  D
Sbjct: 154 VEMDKEKNKLILSQRAVLDEEENEKKRKTLTSIQVGDVLEGKVQRLTDFGAFVDI-GGVD 212

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GLVHISQ++   V   S+VV EGD + VK+L  D D  +I LS+K       +
Sbjct: 213 GLVHISQMAHHHVDAPSEVVSEGDQIKVKVLGVDPDNERISLSIKDTLPGPWE 265



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G+V +++ FGAFV      +GLVHISQ++   +    +V+KEG+ V  K+LD +  
Sbjct: 273 DVIEGKVKRLVSFGAFVEVADGVEGLVHISQIANRHIGTPGEVLKEGENVSAKVLDVNLA 332

Query: 680 RGKIKLSMKVVD 691
             +I LS++ + 
Sbjct: 333 DKRISLSIRAIQ 344



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +        +      V +   G + KV +  AFV+     DG++ IS+LS+  V + SD
Sbjct: 1   MVEEMNNEMADVKSFSVGETVIGTITKVEEKQAFVNVGYKMDGIIPISELSSLHVEQVSD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V+ EGD V ++++   D   I LS K V
Sbjct: 61  VLSEGDEVELQIIKSTDDELI-LSKKEV 87


>gi|300312983|ref|YP_003777075.1| 30s ribosomal protein S1 [Herbaspirillum seropedicae SmR1]
 gi|124483424|emb|CAM32585.1| 30s ribosomal subunit protein S1 [Herbaspirillum seropedicae]
 gi|300075768|gb|ADJ65167.1| 30s ribosomal subunit S1 protein [Herbaspirillum seropedicae SmR1]
          Length = 585

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 162 VDTRPVKDTTPFEGKTLEFKVIKLDRKRN-----NVVLSRRAVIEASMGEERAKLMETLK 216

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L +
Sbjct: 217 EG-TVVTGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLSVGQEITAKVLKY 274

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 275 DQEKNRVSLGVKQLGDDPW 293



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VV+ GD V V +L+ D +R +
Sbjct: 308 GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRR 367

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 368 ISLGMKQCKPNPWDD 382



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   I  G V  V   GA +      +G +  S++S +RV      +K G
Sbjct: 465 DPFNNFAALNDKGAIVTGTVKSVEPKGAVIQLTDEVEGYLRASEISRDRVEDAGTHLKVG 524

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D+V   +++ D + + I+LS+K  D
Sbjct: 525 DSVEALVINIDRKARSIQLSIKAKD 549



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +               +     KG +  + DFG F+   G  D
Sbjct: 359 LEIDEERRRISLGMKQCKPN----PWDDFAMSHKKGDKVKGSIKSITDFGVFIGLPGNID 414

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D +R ++ L +K ++ + 
Sbjct: 415 GLVHLSDLSWTEAGE-EAVRKFKKGDELEAVVLAIDVERERVSLGVKQLEGDP 466


>gi|119509069|ref|ZP_01628220.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414]
 gi|119466235|gb|EAW47121.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414]
          Length = 719

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G V  V +FGAFV     +DGLVHISQL+   V     +VK G  V +++L+ 
Sbjct: 644 EVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPQKIVKVGQVVKIRVLEI 703

Query: 678 DDR-GKIKLSMKVVDQ 692
           +++  +I LS+K V Q
Sbjct: 704 NEKLKRISLSIKAVKQ 719


>gi|330943283|gb|EGH45672.1| RNA binding S1 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 239

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         ++  I +G V  V +FGAFV     +DG
Sbjct: 82  DILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDG 141

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           LVHIS LS + +    + VK GD V VK+++ D  R ++ LSM++ D   G+ I
Sbjct: 142 LVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMSD-TPGEKI 194


>gi|329118647|ref|ZP_08247351.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465382|gb|EGF11663.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 789

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  V +FGAFV     +DGLVHIS LS   V    ++VK GD V VK+L+ 
Sbjct: 665 QIGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDRFVQDPREIVKAGDVVKVKVLEV 724

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R +I L+M++ D   
Sbjct: 725 DAERKRIALTMRLSDDPA 742


>gi|71276295|ref|ZP_00652573.1| RNA binding S1 [Xylella fastidiosa Dixon]
 gi|71900306|ref|ZP_00682442.1| RNA binding S1 [Xylella fastidiosa Ann-1]
 gi|71162903|gb|EAO12627.1| RNA binding S1 [Xylella fastidiosa Dixon]
 gi|71729954|gb|EAO32049.1| RNA binding S1 [Xylella fastidiosa Ann-1]
          Length = 772

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P+Q  +    G   IR I+++      ++  G                E I+      +
Sbjct: 605 KPEQFTDTN-FGIPTIRDIIKE------LEKPGRDPRPEFKAVRFTEGVENIK----DLK 653

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G V  V  FGAFV     +DGL+HIS L+   V    D+VK GD V VK+L+ D
Sbjct: 654 PGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEID 713

Query: 679 -DRGKIKLSMKVVDQNTGK 696
             R +I L+ ++ ++   +
Sbjct: 714 LPRKRIALTCRLHEETPPE 732


>gi|327439143|dbj|BAK15508.1| predicted RNA binding protein [Solibacillus silvestris StLB046]
          Length = 124

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +T   EV  +  G+V  +  +GAFV       GLVHIS+++   V   SD +  GD + V
Sbjct: 1   MTKKIEVGDVLTGKVTGIQPYGAFVALDEYTQGLVHISEITYGFVKDVSDFLSVGDEIEV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNT 694
           K+LD D D+ KI LS++ + +  
Sbjct: 61  KVLDVDTDQKKISLSIRELQEVP 83


>gi|324324254|gb|ADY19514.1| S1 RNA-binding domain-containing protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVEREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSQETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|228983501|ref|ZP_04143711.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228776245|gb|EEM24601.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSQETGVGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|170730495|ref|YP_001775928.1| transcription-related protein [Xylella fastidiosa M12]
 gi|167965288|gb|ACA12298.1| transcription-related protein [Xylella fastidiosa M12]
          Length = 772

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P+Q  +    G   IR I+++      ++  G                E I+      +
Sbjct: 605 KPEQFTDTN-FGIPTIRDIIKE------LEKPGRDPRPEFKAVRFTEGVENIK----DLK 653

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G V  V  FGAFV     +DGL+HIS L+   V    D+VK GD V VK+L+ D
Sbjct: 654 PGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEID 713

Query: 679 -DRGKIKLSMKVVDQNTGK 696
             R +I L+ ++ ++   +
Sbjct: 714 LPRKRIALTCRLHEETPPE 732


>gi|66472734|ref|NP_001018322.1| exosome complex exonuclease MTR3 [Danio rerio]
 gi|123905166|sp|Q6P0I8|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog
 gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
 gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
 gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
          Length = 271

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 21/236 (8%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +  VR + A+ GL+ +  GS+    G+T+ I  V  G +E E+  +  +  +    + 
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSV-YGPKETERRDE--TDMKTGRLVC 93

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
            +   P +  +       S  E         ++ P +         + +   + E+DGS 
Sbjct: 94  DFRLAPFSCVKRGAWIQGSE-ERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSV 152

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH-------- 488
               V  +S+AL DAG+ +   V G  +           L D S  E+            
Sbjct: 153 LAHAVTCASMALADAGIEMYDIVLGCTL----RQSGNACLVDPSYAEECGSWQEGYGDNQ 208

Query: 489 --MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             +   +    + ++ +  D ++    E+ +  A++    G   +   + + L+ +
Sbjct: 209 GCVTLALLPNLNQVSGLNADGEMR---EDTLTEAMRTCMDGCHKLYPVVQQALTRA 261



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 91/239 (38%), Gaps = 27/239 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+    G ++ Q+ G+     G T ++ +V   +  +   +       L  +++   ++
Sbjct: 43  RPVFARCGLVS-QAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFS 101

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
             K        E      E  +S  +  S+RP     +  +++  V + V+++D     H
Sbjct: 102 CVKRGAWIQGSE------ERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAH 155

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED-----------QGSLDL 176
             ++  AS AL  +G+     V+G  +       +++P   E+           QG + L
Sbjct: 156 --AVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTL 213

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
            +    + V  +  +  ++ ED + +A+    + C  +   + +      K+      K
Sbjct: 214 ALLPNLNQVSGLNADG-EMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKKAPPPEK 271


>gi|114049369|ref|YP_739919.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-7]
 gi|113890811|gb|ABI44862.1| RNA binding S1 domain protein [Shewanella sp. MR-7]
          Length = 779

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++ 
Sbjct: 650 KPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVMEV 709

Query: 678 D-DRGKIKLSMK---VVDQNTGK 696
           D +R +I LSM+    +DQ+  +
Sbjct: 710 DVERRRIGLSMRLDEAIDQSKAQ 732


>gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 480

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I   ++R++    G+ I   + +     N      V ++  +L E   +      + ++ 
Sbjct: 155 IELRRVRDLTPYLGQEIEAKILELDKNRN-----NVVLSRRALLEQTQSESRTTFLNNLY 209

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  ++ KG V  +++FGAFV   G  DGLVH+S+LS + +   S+VV+ G  V V++L+ 
Sbjct: 210 KG-QVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEV 267

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D DR ++ LS+K   ++  +
Sbjct: 268 DLDRERVSLSLKATQEDPWQ 287



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I    +V+    E T   + +D D   V ++  +  E     +  +       + ++  G
Sbjct: 247 IEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQE-----DPWQVFARTHAIGQVAPG 301

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V K++ FGAFV      +GLVHIS+LS + V     VV  G+ V+VK++D D +R +I 
Sbjct: 302 KVTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGEEVFVKVIDIDLERRRIS 361

Query: 685 LSMKVVDQ 692
           LS+K  ++
Sbjct: 362 LSLKQANE 369



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            + +G VVK+      +      +G++   +LS +     S+VV  GDTV   +L   D 
Sbjct: 39  DLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPSEVVDVGDTVEALVLQKEDK 98

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 99  EGRLILSKKRAQ 110


>gi|113972136|ref|YP_735929.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-4]
 gi|113886820|gb|ABI40872.1| RNA binding S1 domain protein [Shewanella sp. MR-4]
          Length = 779

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++ 
Sbjct: 650 KPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVMEV 709

Query: 678 D-DRGKIKLSMK---VVDQNTGK 696
           D +R +I LSM+    +DQ+  +
Sbjct: 710 DVERRRIGLSMRLDEAIDQSKAQ 732


>gi|153952815|ref|YP_001393580.1| hypothetical protein CKL_0162 [Clostridium kluyveri DSM 555]
 gi|219853480|ref|YP_002470602.1| hypothetical protein CKR_0137 [Clostridium kluyveri NBRC 12016]
 gi|146345696|gb|EDK32232.1| Predicted ribosomal protein [Clostridium kluyveri DSM 555]
 gi|219567204|dbj|BAH05188.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 136

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I +G V+ +  FGAFV     + GLVHIS++S   V    D +KE D + VK+
Sbjct: 1   MTLKAGSILEGTVINITSFGAFVDV-NGKTGLVHISEVSDTYVKNIRDYLKEKDKIRVKI 59

Query: 675 LDFDDRGKIKLSMKVVDQN 693
           +  DD GKI LSMK  +++
Sbjct: 60  ISIDDNGKISLSMKQAEKD 78


>gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
 gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
          Length = 382

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     GK +   + +        +   V ++  ++ E+E   +   +I+ + 
Sbjct: 133 VEVHYVEDFADYKGKTLAVKIVELDR-----EKNRVILSHKAVVELELDSKKKEAISSLK 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V ++ DFGAFV+  G  DGLVHISQ+S ERV + S+V+++G  V VK+L  
Sbjct: 188 EG-DIVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVNVKVLSV 245

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D D  +I LS+K       + + 
Sbjct: 246 DADTQRISLSIKAAQPGPWENVA 268



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + G  V VK+L+      +I LS+K   + 
Sbjct: 319 EMGQEVKVKVLEVHVAEKRISLSIKETLEE 348



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +          +   +V  +  G V KV +    V+     DG++ IS+L+   + K SD
Sbjct: 1   MVEKMNEEVMNSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           VV+   T+ +K++  +D   + LS + VD  
Sbjct: 61  VVELDQTLELKIIKLEDDDLV-LSKRAVDAE 90


>gi|317130070|ref|YP_004096352.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315475018|gb|ADU31621.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 137

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAF+     + GLVHIS ++   V   ++ +  GD V VK+L  
Sbjct: 6   EVGSIVEGKVTGIKPFGAFIALDDQKQGLVHISHIAHGFVKDINEHLSVGDEVKVKVLSI 65

Query: 678 DDR-GKIKLSMKVVDQNTGK 696
           D+  GKI LS++       +
Sbjct: 66  DEETGKISLSIRETQPKPEQ 85


>gi|257064689|ref|YP_003144361.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476]
 gi|256792342|gb|ACV23012.1| SSU ribosomal protein S1P [Slackia heliotrinireducens DSM 20476]
          Length = 407

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +      I  G+V K++ FGAFV      +GLVHIS+++  R+   + VVK G
Sbjct: 280 DPWLKLVEAYPAGSIIDGKVTKIVPFGAFVELGNNVEGLVHISEMAPRRIDTPAQVVKVG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             V VK+++ + +R +I LSMK      G  I
Sbjct: 340 QDVKVKVMEVNPERRRISLSMKAAAAELGIEI 371



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +  S  A +E AR+  R+      +      G V  ++DFGAFV   G  DGLV
Sbjct: 175 DRNRNNVVLSRRALLEDARKNERAEILGQLKAGMRLNGVVSSIVDFGAFVDL-GGIDGLV 233

Query: 648 HISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           HIS+LS   V   S+VVK G       L    DR +I L +K   ++    +V
Sbjct: 234 HISELSWNHVNHPSEVVKVGQEVEVEVLKVELDRERISLGLKQTTEDPWLKLV 286



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +MI       +   + KG VVK+      +      +G++   +LS  + A  S++V EG
Sbjct: 22  QMIDGTLTEFDEGDLVKGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDADPSEIVAEG 81

Query: 668 DTVWVKLL-DFDDRGKIKLSMKVVD 691
           D +   +L   D  G++ LS K  +
Sbjct: 82  DEIEALVLQKEDKDGRLILSKKRAE 106


>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
          Length = 274

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 308 LDKKVRMDGRDSET--VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
            + K R DG   +   VR +  +VG+L +  GS+   RG T+ I  V  G RE  + +D 
Sbjct: 35  KNNKYRPDGERDKDSSVRPLFCEVGVLTQCKGSAYIERGRTKVIASV-FGPREVNKKLDF 93

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE-IGHGRLARRAIHPVLPQTAQFPYTLR 424
              +      + Y   P ++   +R       E         +     +         + 
Sbjct: 94  --SSTTGILSVEYCETPFSSSSSNRSSKSPSNEDKNISLFLAQTFRSTVCLHLYPKSRID 151

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I   + E+DGS+    +   +LAL DA + +   V G ++ +         L D    E+
Sbjct: 152 IFITVLENDGSAIPTAITAGALALSDASINLFDLVIGASVKMSL----GKALIDPCKAEE 207

Query: 485 HLGHMD 490
            +G M+
Sbjct: 208 EVGDME 213



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYA 69
           RPL  E G +  Q  G+     G T V+A+V   R +    DF      L+V Y E  ++
Sbjct: 52  RPLFCEVGVL-TQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGILSVEYCETPFS 110

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                       +      + +++    ++        K+   + I V+++D  + P   
Sbjct: 111 SSSSNRSSKSPSNEDKNISLFLAQTFRSTV--CLHLYPKSRIDIFITVLENDGSAIP--T 166

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           ++ A + AL  + +     V+GA V    G+ +++P   E++
Sbjct: 167 AITAGALALSDASINLFDLVIGASVKMSLGKALIDPCKAEEE 208


>gi|89100513|ref|ZP_01173374.1| hypothetical protein B14911_02120 [Bacillus sp. NRRL B-14911]
 gi|89084779|gb|EAR63919.1| hypothetical protein B14911_02120 [Bacillus sp. NRRL B-14911]
          Length = 156

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           +  GKI LS+K       +P
Sbjct: 64  EKDGKIGLSIKKAIDRPERP 83


>gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
 gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
          Length = 403

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +  S    +E  R+  R+            KG V  ++DFGAFV   G  DGLV
Sbjct: 175 DRNRNNVVLSRRVLLEEGRKNERAEILSRLTKGMRLKGTVSSIVDFGAFVDL-GGIDGLV 233

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           HIS+LS   V   S+VVK GD V V++LD D  R +I L +K   ++    +V
Sbjct: 234 HISELSWSHVNHPSEVVKVGDEVEVQVLDVDLQRERISLGLKQTTEDPWVKLV 286



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +   V  I  G+V K + FGAFV      +GLVHIS+++ + +   + VV  G
Sbjct: 280 DPWVKLVESYPVGSIIDGKVTKTVPFGAFVELGPNVEGLVHISEMANKHIEAPTQVVHAG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           D V VK+++ + +R +I LSMK   ++ G  I 
Sbjct: 340 DEVKVKVMEINTERRRISLSMKAAAEDLGIEIA 372



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G VVK+      V      +G++   +LS  + A  SD+V  GD++   +L   D 
Sbjct: 35  DLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEALVLQKEDK 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS K  +
Sbjct: 95  DGRLILSKKRAE 106


>gi|228931747|ref|ZP_04094648.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228827927|gb|EEM73660.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|296123806|ref|YP_003631584.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016146|gb|ADG69385.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
          Length = 557

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +    S  +   V K   G+V ++ DFGAF+      +G++HIS+L  +RV + +DV+KE
Sbjct: 421 QNPWNSAPETYAVGKTVTGKVTRITDFGAFIELEPGVEGMIHISELDYKRVKRVADVLKE 480

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           G  V  ++L+   +R +I LS+K +    
Sbjct: 481 GQQVDAQVLEIQPERQRISLSVKALKPKP 509



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           I   +E   S  D  EV + + G +  + D+GAFV   G  DG +H+ ++S  R+   +D
Sbjct: 332 IAERKEAAASFWDKVEVGQKFTGTIKTIKDYGAFVDL-GGVDGFLHVGEMSWTRIKHPTD 390

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V+E  TV V +L  D ++ KI L M+ + QN  
Sbjct: 391 CVREQQTVDVVVLSLDREKQKIGLGMRQLVQNPW 424


>gi|293374114|ref|ZP_06620449.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
 gi|325843793|ref|ZP_08168035.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
 gi|292647280|gb|EFF65255.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
 gi|325489289|gb|EGC91667.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
          Length = 118

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G++  V  FGAFV     + GLVHIS+LS + V K  DVV  G  V V++ +    GKI 
Sbjct: 11  GKITSVKKFGAFVELENGKSGLVHISELSEKFVEKVEDVVSVGQEVTVRVKEVTPEGKIN 70

Query: 685 LSMK-VVDQNTGKP 697
           LSMK    +   +P
Sbjct: 71  LSMKPARPERPARP 84


>gi|329766865|ref|ZP_08258393.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
 gi|328837590|gb|EGF87215.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
          Length = 419

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +++ +VI +G  V   ++          D    KI+ S+   +    E+ R+     + 
Sbjct: 261 VEKVSDVISVGDTVKVAVIAV--------DKENEKISLSAKTLLPTQWEVARATI---KA 309

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + +G V     FGAFV      +GLVHISQ+S +RV    DV+K+GD V VK+L+FD 
Sbjct: 310 GDVLEGVVRNTTAFGAFVEVLPEVEGLVHISQISHDRVTNVEDVLKKGDKVTVKVLEFDF 369

Query: 679 DRGKIKLSMKVVDQNT 694
           +  ++ LS+K + +  
Sbjct: 370 ESERLSLSIKELLEKP 385



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I     +++    G      +E+            + +    + E E A+++     ++ 
Sbjct: 169 IDTKFRKDLSKFVGNEYTFKIEEVDKS-----KNKIILNRRVILEEEKAKKLAEVYGNIN 223

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G+V ++ DFGAFV+  G  DGL+HIS++S  RV K SDV+  GDTV V ++  
Sbjct: 224 EG-DVIEGKVSRITDFGAFVNI-GEVDGLLHISEISHARVEKVSDVISVGDTVKVAVIAV 281

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +  KI LS K +     +
Sbjct: 282 DKENEKISLSAKTLLPTQWE 301



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E++ S   + + +K+  G V K+ +   +V   GA+ D ++  +Q++ +      +V+  
Sbjct: 24  ELLNSSEMLKKGDKV-TGTVSKIDNDKVYVDVAGAQYDCVILRNQITRKPFENIEEVLSV 82

Query: 667 GDTVWVKLLDF--DDRGK-------IKLSMKVVD 691
           GD V  ++     D   +       I LS K+++
Sbjct: 83  GDEVEAQVTGIRADREKRSEDVPGVIYLSYKILE 116


>gi|229194632|ref|ZP_04321429.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1293]
 gi|228588853|gb|EEK46874.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1293]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSQETGVGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|49183274|ref|YP_026526.1| S1 RNA-binding domain-containing protein [Bacillus anthracis str.
           Sterne]
 gi|49476750|ref|YP_034582.1| transcription accessory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476003|ref|YP_893154.1| transcription accessory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|170707864|ref|ZP_02898314.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|196041079|ref|ZP_03108375.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
 gi|49177201|gb|AAT52577.1| S1 RNA binding domain protein [Bacillus anthracis str. Sterne]
 gi|49328306|gb|AAT58952.1| probable transcription accessory protein, S1 RNA-binding domain
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|118415228|gb|ABK83647.1| transcription accessory protein, S1 RNA-binding domain protein
           [Bacillus thuringiensis str. Al Hakam]
 gi|170127222|gb|EDS96099.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|196028014|gb|EDX66625.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
          Length = 724

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 392 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 451

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 452 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 511

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 512 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 570

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 571 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 618

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 619 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 668

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 720


>gi|52144985|ref|YP_081844.1| transcription accessory protein [Bacillus cereus E33L]
 gi|51978454|gb|AAU20004.1| probable transcription accessory protein, S1 RNA-binding domain
           [Bacillus cereus E33L]
          Length = 724

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 392 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 451

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 452 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 511

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 512 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 570

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 571 YKNVELLLKSLSLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 618

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 619 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 668

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 720


>gi|117922444|ref|YP_871636.1| RNA-binding S1 domain-containing protein [Shewanella sp. ANA-3]
 gi|117614776|gb|ABK50230.1| RNA binding S1 domain protein [Shewanella sp. ANA-3]
          Length = 779

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK GD V VK+++ 
Sbjct: 650 KPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVMEV 709

Query: 678 D-DRGKIKLSMK---VVDQN 693
           D +R +I LSM+    +DQ+
Sbjct: 710 DVERRRIGLSMRLDEAIDQS 729


>gi|320529060|ref|ZP_08030152.1| S1 RNA binding domain protein [Selenomonas artemidis F0399]
 gi|320138690|gb|EFW30580.1| S1 RNA binding domain protein [Selenomonas artemidis F0399]
          Length = 733

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  + DFGAF+     + GL+HIS++S  RV    DV+  GD + V ++  D
Sbjct: 650 VGTVLRGTVRNITDFGAFIDIGLKQAGLLHISEMSGRRVRHPLDVLSVGDVLDVMIISID 709

Query: 679 D-RGKIKLSMKVVD 691
           + RG+I LS+K + 
Sbjct: 710 ETRGRIGLSLKQLQ 723


>gi|229825037|ref|ZP_04451106.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC
           49176]
 gi|229790784|gb|EEP26898.1| hypothetical protein GCWU000182_00387 [Abiotrophia defectiva ATCC
           49176]
          Length = 647

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVE 579
            ++    R  IL      L ++  +       V+            I +GG   +  I E
Sbjct: 443 KRRVIGDRKQILTAKKNELKKALFEKLAVGQVVDGTVKNVTDFGAFIDLGGADGLLHISE 502

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEI-----EAAREMIRSITDVPEVNKIYKGQV 627
            +   +        + D     +      +I        +       +   V  I  G+V
Sbjct: 503 MSWGHIENPKKVFKVGDMVKTFVKDIQGEKIALSLKFEDQNPWAGAEEKFAVGTIVSGKV 562

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            ++ DFGAF+      D L+H+SQ++T  V K SDV+K G+ V  K++DF+ +  KI LS
Sbjct: 563 ARMTDFGAFIELEPGVDALLHVSQIATNHVEKPSDVLKTGEEVTAKVVDFNAETKKISLS 622

Query: 687 MKVV----DQNTGK 696
           +K +    D+N  K
Sbjct: 623 IKALLAGADENEEK 636



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           ++   + +AE+     +  S+       ++ +G V+ V +    ++     DG++  ++ 
Sbjct: 272 IEEVRTRMAEMSFEEMLEESLKTTRHNGEVVEGTVIAVKEDEIILNIGYKADGILTKNEY 331

Query: 653 STERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           S       + V K GD + VK+L   D  G++ L+ K +    G
Sbjct: 332 SNT-PTDLTTVAKVGDKMEVKVLKLNDGDGQVLLTYKRLAAEKG 374


>gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
 gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
 gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
          Length = 405

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P  + ++  +    +    E     + +D +   V ++   L E     E    +  + +
Sbjct: 147 PASLVDLRRVKDLDMYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILAKLSK 206

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             ++ KG V  ++DFGAFV   G  DGLVHIS+LS   V   S+VVK GD V V++LD D
Sbjct: 207 GMRL-KGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVD 264

Query: 679 -DRGKIKLSMKVVDQNTGKPIV 699
             R +I L +K   ++    +V
Sbjct: 265 LQRERISLGLKQTTEDPWVKLV 286



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +   V  I  G+V K++ FGAF+    + +GLVHIS+++   +   + VVK G
Sbjct: 280 DPWVKLVESYPVGTIVDGKVTKIVPFGAFIELGQSIEGLVHISEMAMRHIDTPAQVVKAG 339

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D V VK+++ + +R +I LSMK    + G  I
Sbjct: 340 DEVKVKVMEINPERRRISLSMKAAAADLGFEI 371



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I +   +     S  ++ A  +   +  D      +  G VVK+      V      +G
Sbjct: 3   DIKNTSVIDFEDISDEQMNAMIDGTLTEFDE---GDLVDGTVVKIEHDEVLVDIGFKSEG 59

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
           ++   +LS  + A  SD+V+ G+ +   +L   D  G++ LS K  +
Sbjct: 60  VIPSRELSIRKDADPSDIVELGEKIEALVLQKEDKDGRLILSKKRAE 106


>gi|149177996|ref|ZP_01856593.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
 gi|148843189|gb|EDL57555.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
          Length = 641

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  ++    P  I N IG         +E    K+   D+    I  S    IE 
Sbjct: 158 VNVFLPASQVDIRRPSDIANYIGRT-------IECVILKI---DEARRNIVVSRRKLIEE 207

Query: 606 AREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            RE ++       E  +I KG V  + DFGAFV   G  DGL+HI+ +S  R+   +++V
Sbjct: 208 KREKLKQDLLSKIEEGQIVKGIVKNIADFGAFVDL-GGIDGLLHITDMSWGRINHPTEIV 266

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K  D + V +L  D D+ KI L +K    +  +
Sbjct: 267 KIDDEIEVMILSVDRDKEKIALGLKQKSPSPWE 299



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKV- 573
            +   + +    R +I+    K++ E R +L +    ++E   I    ++N+   G  V 
Sbjct: 182 TIECVILKIDEARRNIVVSRRKLIEEKREKLKQDLLSKIEEGQIVKGIVKNIADFGAFVD 241

Query: 574 ------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIEAA---REMIRSITDVP 617
                 +  I + +  ++N       IDD+  V I S    + + A   ++   S  ++ 
Sbjct: 242 LGGIDGLLHITDMSWGRINHPTEIVKIDDEIEVMILSVDRDKEKIALGLKQKSPSPWELV 301

Query: 618 E----VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
           E    V     G VV VM +GAFV      +GLVHIS++S  +R+   S++V  GD V V
Sbjct: 302 ESKYPVGTKVNGHVVNVMSYGAFVKLEDGIEGLVHISEMSWTKRINHPSELVNIGDEVEV 361

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +L  + D+ +I L MK    N    +
Sbjct: 362 VVLGVNKDKQEISLGMKQTQSNPWDEV 388



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 100/256 (39%), Gaps = 28/256 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G+VK+  DF    D+ G +   H+  M +      + I  +  ++        +M++
Sbjct: 225 IVKGIVKNIADFGAFVDLGGIDGLLHITDMSWGRINHPTEIVKIDDEI-------EVMIL 277

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM--GGKVIRGI 577
           ++ + K      L + S    E          +V    +        + +  G + +  I
Sbjct: 278 SVDRDKEKIALGLKQKSPSPWELVESKYPVGTKVNGHVVNVMSYGAFVKLEDGIEGLVHI 337

Query: 578 VEQTGAK--------VNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKI 622
            E +  K        VNI D+  V +   +           +        +T        
Sbjct: 338 SEMSWTKRINHPSELVNIGDEVEVVVLGVNKDKQEISLGMKQTQSNPWDEVTKKYPEGAQ 397

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DR 680
            KG V  + ++GAF+      DGL+H+S +S  R ++  S+V+K+GD +   ++  D +R
Sbjct: 398 VKGTVRNLTNYGAFIELEEGVDGLLHVSDMSWTRKISHASEVMKKGDEIECLVISVDEER 457

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L +K +  +  +
Sbjct: 458 KRIALGLKQLASDPWE 473



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I    +V++   E     +++D++   +   +   +  A+      I    +   I +G 
Sbjct: 433 ISHASEVMKKGDEIECLVISVDEE---RKRIALGLKQLASDPWETDIPQKYQPGAIVQGT 489

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V K+ +FG FV      +GL+HIS+L+  +V    D+VK G+ + VK+L  D D  KI L
Sbjct: 490 VTKITNFGVFVELEEELEGLLHISELADHKVENPEDIVKVGEKLDVKILRVDTDDRKIGL 549

Query: 686 SMKVVD 691
           S K+ +
Sbjct: 550 SRKLEE 555


>gi|42522621|ref|NP_968001.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
 gi|39575153|emb|CAE78994.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
          Length = 595

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
              I  S  A +E  R+ +RS T D      +  G V  + D+GAF+   G  DGL+HI+
Sbjct: 196 RGNIVLSRRALLEEERDSLRSQTLDTMAEGSVVTGVVKNITDYGAFIDLGGM-DGLLHIT 254

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +S  RV   S+++  GD + VK+L +D ++ ++ L MK +  +  + +
Sbjct: 255 DMSWGRVKHPSEMLNVGDEIQVKVLKYDKEKERVSLGMKQLHADPWESV 303



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD- 678
            I +G+V  V DFG F+      DGLVHIS  S  +RV   +++  +G  V   +L  D 
Sbjct: 398 TIIEGEVKSVTDFGIFIGIEEGIDGLVHISDFSWTKRVNHPNELYAKGQKVRAVVLGVDI 457

Query: 679 DRGKIKLSMKVVDQNTGKPI 698
           +  +  L +K ++ +    I
Sbjct: 458 ENERFSLGIKQLESDPWSNI 477



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +I +   +   +  +V K  DFGAFV      +GL+HIS+L+TE++    + +K G
Sbjct: 472 DPWSNIENKYAIGTQHDVKVTKTADFGAFVELESDIEGLIHISELTTEKINSVEEFIKPG 531

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
            +V  +++  D D  KI LS K+V
Sbjct: 532 QSVKAEVISIDKDARKIGLSAKLV 555



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  +L E    L    L        V  +          I +GG   +  I + +  +V
Sbjct: 202 SRRALLEEERDSLRSQTLDTMAEGSVVTGVVKNITDYGAFIDLGGMDGLLHITDMSWGRV 261

Query: 586 -------NIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
                  N+ D+  VK+               +   +   S+          KG+VV + 
Sbjct: 262 KHPSEMLNVGDEIQVKVLKYDKEKERVSLGMKQLHADPWESVKASYPPGTKLKGKVVSLA 321

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKV 689
           ++GAFV      +GL+H+S++S  +RV   S +V     V V +L+ D    +I L MK 
Sbjct: 322 EYGAFVELGEGIEGLIHVSEMSWTKRVKHPSQIVTVDQEVEVVVLEVDTENRRISLGMKQ 381

Query: 690 VDQNTG 695
           +  N  
Sbjct: 382 LQANPW 387


>gi|329847165|ref|ZP_08262193.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19]
 gi|328842228|gb|EGF91797.1| ribosomal protein S1 [Asticcacaulis biprosthecum C19]
          Length = 562

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEEARAEQRTELVGQLAEG-EIRDGVVKNITDYGAFVDL-GGIDGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +S +RV+  S V+  GD V V+++  + D  +I L MK +  +  + +
Sbjct: 226 DMSWKRVSHPSQVLNVGDAVRVQIIKINPDTQRISLGMKQLQSDPWENV 274



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A             +    +G+V    +FG FV F    DG+VH+S L       +   
Sbjct: 352 QAQENPWDQFLRQHPIGSTIEGEVKNATEFGLFVGFENDIDGMVHLSDLDWNVPGEEAIA 411

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             K+GD V  K+LD D D+ +I L +K +  + 
Sbjct: 412 KYKKGDAVRSKVLDVDVDKERISLGIKQLGNDP 444



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     V   + G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 269 DPWENVDTKYPVGGKFSGRITNITDYGAFVELESGVEGLVHVSEMSWTKKNVHPGKIVST 328

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              V V +L+ D  + ++ L +K   +N  
Sbjct: 329 SQEVEVVVLEVDASKRRVSLGLKQAQENPW 358



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           F          V  S LS +R  +  +    GD +  ++ + D    K+ +S+K ++   
Sbjct: 472 FGEDEAPMSAFVRKSDLSRDRNEQRVERFAVGDRIDAQVTNVDKAARKVSVSIKALEMAA 531

Query: 695 GKPIV 699
            K  +
Sbjct: 532 EKEAI 536


>gi|323340110|ref|ZP_08080375.1| S1 RNA-binding domain protein [Lactobacillus ruminis ATCC 25644]
 gi|323092487|gb|EFZ35094.1| S1 RNA-binding domain protein [Lactobacillus ruminis ATCC 25644]
          Length = 164

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G++  + +FGAFV     + GLVHIS++S   V    DV+  GDTV VK+L  
Sbjct: 4   EVGSKVSGKISGITNFGAFVDLGDKKTGLVHISEVSDGFVKDIHDVLTVGDTVTVKVLSV 63

Query: 678 DDRGKIKLS-MKVVDQNTG 695
            D GKI LS  K  D+  G
Sbjct: 64  GDDGKISLSIRKAQDKPEG 82


>gi|319779316|ref|YP_004130229.1| SSU ribosomal protein S1p [Taylorella equigenitalis MCE9]
 gi|317109340|gb|ADU92086.1| SSU ribosomal protein S1p [Taylorella equigenitalis MCE9]
          Length = 569

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++      K +   V +   K N      V ++  S+ E     E+ + + ++ 
Sbjct: 146 VDVRPVKDTTPYENKTMEFKVIKLDRKRN-----NVVLSRRSVLESSMGEELQKLLENLQ 200

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + KG V  + ++GAFV   G  DGL+HI+ ++  RV   S+V+  G  V  K+L F
Sbjct: 201 EGS-VVKGTVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVLTVGQEVEAKVLKF 258

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D D+ ++ L +K + ++  
Sbjct: 259 DKDKNRVSLGIKQLGEDPW 277



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +      +    G+V  + ++GAFV      +GLVH+S++    +      VV +
Sbjct: 275 DPWVGLATRYPKDSKLTGKVTNITEYGAFVEVETGIEGLVHVSEMDWTNKNVDPRKVVSQ 334

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D DR +I L MK V  N  + 
Sbjct: 335 GQEIEVCVLEIDEDRRRISLGMKQVQPNPWEE 366



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           KV+    E     + ID+D           +            +  +     KG +  + 
Sbjct: 330 KVVSQGQEIEVCVLEIDEDRRRISLGMKQVQPN----PWEEFANNHKRGDRIKGAIKSIT 385

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           DFG F+   G  DGL+H+S LS     +     + +GD +   ++  D ++ +I L  K 
Sbjct: 386 DFGVFIGLEGGIDGLIHLSDLSWNEPGEVYVRKLSKGDEIEAIVIAIDTEKERISLGHKQ 445

Query: 690 VDQNT 694
           ++ + 
Sbjct: 446 LEGDP 450



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     T   E + + KG V  V   GA V      +G +  S++S  R+   + V+KEG
Sbjct: 449 DPFTMYTSAHEKSSLVKGVVKSVEPKGATVTLDSEVEGYLRASEISNGRIEDATTVLKEG 508

Query: 668 DTVWVKLLDFDDRGK-IKLSMKV 689
           D V   +++ D + + I+LS+K 
Sbjct: 509 DEVEAMIINIDRKARSIQLSIKA 531


>gi|195380363|ref|XP_002048940.1| GJ21042 [Drosophila virilis]
 gi|194143737|gb|EDW60133.1| GJ21042 [Drosophila virilis]
          Length = 1267

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGDTVWV 672
           PE+ KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV    TV V
Sbjct: 305 PELGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQTVKV 364

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K++    + K+ LSMK VDQ +G+ +
Sbjct: 365 KVMSLTGQ-KVSLSMKEVDQESGRDL 389


>gi|28199110|ref|NP_779424.1| transcription-related protein [Xylella fastidiosa Temecula1]
 gi|182681838|ref|YP_001829998.1| RNA-binding S1 domain-containing protein [Xylella fastidiosa M23]
 gi|28057208|gb|AAO29073.1| transcription-related protein [Xylella fastidiosa Temecula1]
 gi|182631948|gb|ACB92724.1| RNA binding S1 domain protein [Xylella fastidiosa M23]
 gi|307578087|gb|ADN62056.1| RNA-binding S1 domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 772

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P+Q  +    G   IR I+++      ++  G                E I+      +
Sbjct: 605 KPEQFTDTN-FGIPTIRDIIKE------LEKPGRDPRPEFKAVRFTEGVENIK----DLK 653

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G V  V  FGAFV     +DGL+HIS L+   V    D+VK GD V VK+L+ D
Sbjct: 654 PGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEID 713

Query: 679 -DRGKIKLSMKVVDQNTGK 696
             R +I L+ ++ ++   +
Sbjct: 714 VPRKRIALTCRLHEETPPE 732


>gi|56961881|ref|YP_173603.1| hypothetical protein ABC0099 [Bacillus clausii KSM-K16]
 gi|56908115|dbj|BAD62642.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 142

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E     +G+V  +  FGAFV   G   GLVHIS+++   V   ++++K GD V VK+++ 
Sbjct: 4   EAGSKLQGKVTGITHFGAFVELPGGSTGLVHISEVADHYVKDINELLKVGDEVTVKVVNV 63

Query: 678 DDRGKIKLS-MKVVDQNTGK 696
           +  GKI LS  K VD+  G+
Sbjct: 64  EKDGKIGLSIRKAVDRPEGE 83


>gi|152977194|ref|YP_001376711.1| general stress protein 13 [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025946|gb|ABS23716.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 133

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 29  IVKGKVTGIQDYGAFVALDDETQGLVHISEITNGYVKDVHDYLKIGDTVEVKVLSVDEEH 88

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  GK +V
Sbjct: 89  KKMSLSLKAAKRKQGKVLV 107


>gi|153931066|ref|YP_001383520.1| 30S ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397]
 gi|153935687|ref|YP_001387069.1| 30S ribosomal protein S1 [Clostridium botulinum A str. Hall]
 gi|152927110|gb|ABS32610.1| ribosomal protein S1 [Clostridium botulinum A str. ATCC 19397]
 gi|152931601|gb|ABS37100.1| ribosomal protein S1 [Clostridium botulinum A str. Hall]
          Length = 387

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G++++ 
Sbjct: 104 LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKGEMVK- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + E   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V ++  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPW 273



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       ++   ++ D   V  + +G +
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTI 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 351 IKEATEKPKED 361



 Score = 41.8 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|94968822|ref|YP_590870.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550872|gb|ABF40796.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
          Length = 539

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 14/183 (7%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQ---LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           AL++A      I+  ++ V+         +  F P          ++  ++G        
Sbjct: 92  ALEKAFADEATIMGTVTGVIKGGVTVDVGVRAFMPASRTGTRDAAEMEKLVGSE------ 145

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +     K+++ D+  V    + L E   A+E  R   ++ E   ++ G V  + D+GAF
Sbjct: 146 -IRCRITKIDVADEDVVVDRRAVLEEETRAQEGRRYE-ELQEGATVH-GTVRSLADYGAF 202

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  D L+H++++S  RV   +DV+  G  V  K++  D ++ +I LSMK +  +  
Sbjct: 203 VDI-GGVDALLHVAEISWSRVNSPADVLTVGQEVEAKVIKVDPEKRRISLSMKQLQPHPW 261

Query: 696 KPI 698
             +
Sbjct: 262 DSV 264



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +  +       + +G V  V  FGAFV      +G+VH+S+LS +RV    DVVK G
Sbjct: 346 DPWKDASQKFAAGTVIEGPVTSVQKFGAFVQLTEGVEGMVHVSELSDKRVDHPQDVVKLG 405

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVV 690
             V   +L  D   + IKLSMK +
Sbjct: 406 QRVQAMVLAIDPEKRQIKLSMKQL 429



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               S+    +V    +G V ++MDFGAFV      +G++H+S++S  ++V K SD++K 
Sbjct: 259 HPWDSVPSKYKVGDRVRGTVSRLMDFGAFVELEPGIEGMIHVSEMSWAKKVRKPSDLLKT 318

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD+V   +L  +    +I L +K    +  K 
Sbjct: 319 GDSVEAVILGINPAEKRIALGLKQALGDPWKD 350


>gi|330466770|ref|YP_004404513.1| tex-like protein [Verrucosispora maris AB-18-032]
 gi|328809741|gb|AEB43913.1| tex-like protein protein-like protein [Verrucosispora maris
           AB-18-032]
          Length = 799

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 20/152 (13%)

Query: 563 IRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++   G+ +R I+ ++       A   +DD   +   +  LAE+E      R   ++
Sbjct: 580 VRRILSSTGQDLRSIIGRSAILRGLRATDFVDDTFGLPTVTDILAELEKPGRDPRPEFKT 639

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    V KI         +G V  V  FGAFV     +DGLVH+S +S   V    +VV
Sbjct: 640 ATFAEGVEKISDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPHEVV 699

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           K GD V VK+LD D  R +I L+++ +D+++ 
Sbjct: 700 KSGDVVRVKVLDVDVPRKRISLTLR-LDEDSA 730


>gi|293390844|ref|ZP_06635178.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951378|gb|EFE01497.1| protein YhgF [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 771

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK GD V VK+L+ 
Sbjct: 649 KAGMILEGMVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDVVKVKVLEV 708

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I L+M+ +D++  K
Sbjct: 709 DVARRRIALTMR-LDESAVK 727


>gi|317495376|ref|ZP_07953745.1| S1 RNA binding domain-containing protein [Gemella moribillum M424]
 gi|316914435|gb|EFV35912.1| S1 RNA binding domain-containing protein [Gemella moribillum M424]
          Length = 404

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I     +++    G+     +E+        D   + +    + E E A+++     ++ 
Sbjct: 152 IDTKFRKDLSKFVGQEYTFKIEEVDK-----DKNKIILNRRVILEEERAKKLAEVYGNIN 206

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G+V ++ DFGAF++  G  DGL+HIS++S  RV+K SDV+  GD V V ++  
Sbjct: 207 EG-DVIEGKVSRITDFGAFINL-GEVDGLLHISEISHARVSKVSDVLAVGDVVKVAVISV 264

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +  KI LS K +     +
Sbjct: 265 DKENEKISLSAKTLLPTQWE 284



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +V  + +G V     FGAFV      +GLVHISQLS ERV    DV+K+GD
Sbjct: 282 QWEVARATIKVGDVLEGVVRNTTAFGAFVEVMDDVEGLVHISQLSHERVDNVEDVLKKGD 341

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVD 691
            V VK+LD D +  ++ LS+K + 
Sbjct: 342 KVTVKVLDIDFENERLSLSIKELQ 365



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E++ S   + + +K+  G V K+ +   +V   GA+ D ++  +Q++ +      +V+  
Sbjct: 7   ELLNSSEMLKKGDKV-TGTVSKIENDKVYVDVAGAQYDCVILRNQITRKPFENIEEVLSV 65

Query: 667 GDTVWVKLLDF--DDRGK-------IKLSMKVVD 691
           GD +  ++     D   +       I LS K+++
Sbjct: 66  GDEIEAQVTGIRADREKRSEDVPGVIYLSHKILE 99


>gi|218885973|ref|YP_002435294.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756927|gb|ACL07826.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 756

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  V  FGAFV     RDGLVH+SQLS   V   ++VV  G TV V++L+ 
Sbjct: 680 EPGMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPAEVVAPGRTVRVRVLEV 739

Query: 678 DD-RGKIKLSMKVVDQN 693
           D  RG++ L+MK VDQ 
Sbjct: 740 DRARGRVSLTMKGVDQQ 756


>gi|42779356|ref|NP_976603.1| S1 RNA-binding domain-containing protein [Bacillus cereus ATCC
           10987]
 gi|42735271|gb|AAS39211.1| S1 RNA binding domain protein [Bacillus cereus ATCC 10987]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSQETGVGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|187929004|ref|YP_001899491.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12J]
 gi|187725894|gb|ACD27059.1| RNA binding S1 domain protein [Ralstonia pickettii 12J]
          Length = 777

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 547 GEFTPRVEIMAIPPDQ-IRNVIG----MGGKVIRGIVEQTG---AKVNIDDDGTVKIASS 598
            E  P V+ +     + I +V+G    + G   R   ++       V+I  +        
Sbjct: 579 PEAYPVVKRILDSIKKGIGDVLGNREALRGLTARDFTDEKFGLPTVVDILSELEKPGRDP 638

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                 A  +         +   + +G V  V  FGAF+     +DGLVH+S LST+ V 
Sbjct: 639 RPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVR 698

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
              +VVK G  V VK+++ D  R +I L+M++ D+ 
Sbjct: 699 DPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLSDEP 734


>gi|47216140|emb|CAG10014.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 241

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVV 664
            R     +  +P +  I KG+VV V  +GAFV   G  ++GLVH+S++S  RV   S++V
Sbjct: 7   QRPEPAGLEGLPPMYSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIV 66

Query: 665 KEGDTVWVKLLDFDDRG---KIKLSMKVVDQNTGKPI 698
             G+ VW+K++  + RG   K+  SMK V+Q TG+ +
Sbjct: 67  DVGEQVWIKVIGREIRGDKVKLSFSMKAVNQGTGRDL 103


>gi|313896602|ref|ZP_07830151.1| Tex-like protein N-terminal domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974787|gb|EFR40253.1| Tex-like protein N-terminal domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 733

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  + DFGAF+     + GL+HIS++S  RV    DV+  GD + V ++  D
Sbjct: 650 VGTVLRGTVRNITDFGAFIDIGLKQAGLLHISEMSGRRVRHPLDVLSVGDVLDVMIISID 709

Query: 679 D-RGKIKLSMKVVD 691
           + RG+I LS+K + 
Sbjct: 710 ETRGRIGLSLKQLQ 723


>gi|225862297|ref|YP_002747675.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
 gi|225787563|gb|ACO27780.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|225572241|ref|ZP_03781105.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040303|gb|EEG50549.1| hypothetical protein RUMHYD_00535 [Blautia hydrogenotrophica DSM
           10507]
          Length = 368

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 20/199 (10%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI------MAIPPDQIRNV 566
            + I  +  +   + R  I N    +L+E   +  E   R+ +      +          
Sbjct: 151 DQEIEFLITEFNPKRRRIIGNRKQLLLAEKAEKQKELMARISVGDTVEGVVKNVTDFGAF 210

Query: 567 IGMGGKV-IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           I +GG   +  I E +  +V        + D   V I   +  +I  + +       +  
Sbjct: 211 IDLGGADGLLHISEMSWGRVENPKKVFKVGDTVKVLIKDINGDKIALSLKFPEENPWLTA 270

Query: 619 VNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
             K     +  G+V ++ DFGAFV      D L+H+SQ+S E V K +DV+  G  +  K
Sbjct: 271 AEKFAVGNVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPADVLNIGQEIQAK 330

Query: 674 LLDFD-DRGKIKLSMKVVD 691
           ++DF+ +  KI LSMK ++
Sbjct: 331 VVDFNGEEKKISLSMKALE 349



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 11/179 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +  R  +   +   L     +   F P      +     +++     + I  
Sbjct: 100 LEEAYENQEVLRAPVTQVLDGGLCVVVDEARVFIPASL---VSDTYEKDLSKYADQEIEF 156

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           ++ +   K          I +     +    E  + +     V    +G V  V DFGAF
Sbjct: 157 LITEFNPKR------RRIIGNRKQLLLAEKAEKQKELMARISVGDTVEGVVKNVTDFGAF 210

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +   GA DGL+HIS++S  RV     V K GDTV V + D +   KI LS+K  ++N  
Sbjct: 211 IDLGGA-DGLLHISEMSWGRVENPKKVFKVGDTVKVLIKDINGD-KIALSLKFPEENPW 267



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I +G V+ V D    ++     DG++  ++ S ++     DVV  G
Sbjct: 8   QMLEESLKTIRNGEIVQGTVIDVKDDEIILNIGYKADGIITKNEYSNDQSIVLQDVVHVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D++  K+L   D  G++ L+ K +    G
Sbjct: 68  DSMEAKVLKVNDGEGQVVLTYKRLAAEKG 96


>gi|157803695|ref|YP_001492244.1| 30S ribosomal protein S1 [Rickettsia canadensis str. McKiel]
 gi|157784958|gb|ABV73459.1| 30S ribosomal protein S1 [Rickettsia canadensis str. McKiel]
          Length = 568

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   A      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMHIKQPFKILSMDKKLGNIVVSRRAILEESRAEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   I +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V++    V V +
Sbjct: 201 KIKEG-MILEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWEVI 283



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
               I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEVIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKCNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  + K  +  + DFG FV      DG++H   +S +   K  D++   K+GD +  K+L
Sbjct: 376 VGTVIKAPIRNITDFGIFVALGNNMDGMIHEGDISWD--NKGMDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K + QN  + I
Sbjct: 434 AINIEKEQVSLGIKQLSQNPYQEI 457



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +   + I+D  +   I KG +  + D G  V       G +  ++LS E+  +  ++ K 
Sbjct: 451 QNPYQEISDKYKKGTIVKGLITAIKDDGLEVLLNNEVAGFIKSTELSDEKDEQKPEMFKV 510

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKV 689
            + +  K++  +    +I LS+K 
Sbjct: 511 DEEIEAKVISIEKSTDRILLSVKA 534


>gi|303256837|ref|ZP_07342851.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
 gi|330998916|ref|ZP_08322643.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
 gi|302860328|gb|EFL83405.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
 gi|329576130|gb|EGG57649.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
          Length = 564

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 143 VDTRPVKDTTPYEGKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLLETLK 197

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I KG V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+++G  +  K+L F
Sbjct: 198 EGA-IVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLEQGQEITAKVLKF 255

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K + ++  
Sbjct: 256 DQEKNRVSLGIKQLGEDPW 274



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I           G+V  + D+GAFV      +GLVH+S++    +      VV+ 
Sbjct: 272 DPWIGIARRYPQGTRLFGKVTNITDYGAFVEIEAGIEGLVHVSEMDWTNKNVDPKKVVQL 331

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           G+ V V +L+ D+ R +I L MK    N  + 
Sbjct: 332 GEEVEVMVLEIDEERRRISLGMKQCKPNPWEE 363



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     E   +  G+V  V   GA +      +G +  S++  +RV    +V+KEG
Sbjct: 446 DPFNNFCSTHEKGSVVTGKVKSVEAKGAVIDLGNDTEGYLRASEIGPDRVEDARNVLKEG 505

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V   + + D + + I+LS++  DQ   + 
Sbjct: 506 DEVTAAITNIDRKARSIQLSIRAKDQAETRE 536



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 38/260 (14%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  D+    D+ G +   H+  + ++     S +     +     I+  ++ 
Sbjct: 200 AIVKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLEQGQE-----ITAKVLK 254

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P+   +      I +      I  G + 
Sbjct: 255 FDQEKNRVSL-----GIKQLGEDPWIGIARRYPQGTRLFGKVTNITDYGAFVEIEAGIEG 309

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      N+D    V++       +    E                        +
Sbjct: 310 LVHVSEMDWTNKNVDPKKVVQLGEEVEVMVLEIDEERRRISLGMKQCKPNPWEEFAATHQ 369

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
                KGQ+  + DFG F+   G  DGLVH+S LS        + V   K+G+ +   +L
Sbjct: 370 KGDTVKGQIKSITDFGVFIGLEGGIDGLVHLSDLSWTEPG--EEAVRKYKKGEELEAVVL 427

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K +  + 
Sbjct: 428 SIDVERERISLGVKQMSGDP 447


>gi|294102013|ref|YP_003553871.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293616993|gb|ADE57147.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 503

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKGQ 626
           G G    + + E    K+   D    ++  S    +E A E  R+          I +G+
Sbjct: 158 GRGVNPGKFVGEVFDVKLLEKDRRKRRLVLSRRMLVEEAVEEQRNKFYTTVSEGDILEGR 217

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  +  FGAF++     DGLVHIS+LS +R  K  +VVK+G+TV VK++  + +  ++ L
Sbjct: 218 VSSITSFGAFINLGP-IDGLVHISELSWKRNVKPKEVVKKGETVKVKVIGIEQENNRVSL 276

Query: 686 SMKVVDQNTG 695
           S+K    +  
Sbjct: 277 SIKQTQPDPW 286



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 22/194 (11%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-------I 574
           ++ +R R  +L+    V      Q  +F   V    I   ++ ++   G  +       +
Sbjct: 177 EKDRRKRRLVLSRRMLVEEAVEEQRNKFYTTVSEGDILEGRVSSITSFGAFINLGPIDGL 236

Query: 575 RGIVEQTGAK----VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK------ 624
             I E +  +      +   G          E E  R  +      P+   I +      
Sbjct: 237 VHISELSWKRNVKPKEVVKKGETVKVKVIGIEQENNRVSLSIKQTQPDPWSIVEENWKIG 296

Query: 625 ----GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
               G V  V DFGAFV      +GL+HI  LS  R+    DV+K+G  V V +LD D +
Sbjct: 297 DKASGVVTNVTDFGAFVEVGPGIEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAE 356

Query: 680 RGKIKLSMKVVDQN 693
           + ++ L  K ++  
Sbjct: 357 KKRMSLGYKQLNDP 370



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 567 IGMGGKVIRGIVEQTGAKV----NIDDDGTVKIASSSLAEIEAAR---------EMIRSI 613
           +G G + +  I + + A++    ++   G          + E  R         +    I
Sbjct: 315 VGPGIEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAEKKRMSLGYKQLNDPWTGI 374

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +     +    +VV++ DFGAFV      +GL+HISQLST+RV K  DV+ EG+ V  +
Sbjct: 375 EERYTKGQDITVKVVRLADFGAFVEVEEGVEGLIHISQLSTKRVDKPEDVLSEGEEVLAR 434

Query: 674 LLDFDD-RGKIKLSMKVVDQNT 694
           +++ +    +++LS+  + +  
Sbjct: 435 VIEINPAERRMRLSISALFEEE 456


>gi|153814811|ref|ZP_01967479.1| hypothetical protein RUMTOR_01026 [Ruminococcus torques ATCC 27756]
 gi|317500330|ref|ZP_07958555.1| hypothetical protein HMPREF1026_00498 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847842|gb|EDK24760.1| hypothetical protein RUMTOR_01026 [Ruminococcus torques ATCC 27756]
 gi|316898271|gb|EFV20317.1| hypothetical protein HMPREF1026_00498 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 367

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 14/191 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVE 579
             +    R  +L        +      +   RV+ +          + +GG   +  I E
Sbjct: 165 RNRVIGDRRQLLVAERAEKQKELFARLQVGDRVDGVIKNVTDFGAFVDLGGVDGLLHISE 224

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITDV-----PEVNKIYKGQV 627
            +  +++       + D  TV +      ++  + +   +           V  +  G+V
Sbjct: 225 MSWGRIDNPKKNFHVGDTLTVLVKDIHDTKVALSLKFPETNPWANASENFAVGTVITGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  K++D + +  KI LS
Sbjct: 285 ARMTDFGAFVELAPGVDALLHVSQISREHVEKPSDVLSVGQEITAKIVDLNEEEKKISLS 344

Query: 687 MKVVDQNTGKP 697
           MK ++ +  + 
Sbjct: 345 MKALEADRDEE 355



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  ++ S +     + VV  G
Sbjct: 8   QMLDESFKTIHNGEVVEGTVIDVKPEEIILNIGYKADGIITKNEYSNDPSVDLTKVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+ VK+L   D  G++ L+ K +    G
Sbjct: 68  DTMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|30260431|ref|NP_842808.1| S1 RNA-binding domain-containing protein [Bacillus anthracis str.
           Ames]
 gi|47525512|ref|YP_016861.1| s1 RNA-binding domain-containing protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|65317683|ref|ZP_00390642.1| COG2183: Transcriptional accessory protein [Bacillus anthracis str.
           A2012]
 gi|229604808|ref|YP_002864882.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
 gi|30253752|gb|AAP24294.1| S1 RNA binding domain protein [Bacillus anthracis str. Ames]
 gi|47500660|gb|AAT29336.1| S1 RNA binding domain protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|229269216|gb|ACQ50853.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 128/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G    V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTARNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|304436925|ref|ZP_07396889.1| YhgF like protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370124|gb|EFM23785.1| YhgF like protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 729

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  + DFGAF+     + GL+HIS++S  RV    DV+  GDT+ V ++  D
Sbjct: 650 VGTIMRGTVRNITDFGAFIDIGLKQAGLLHISEMSRRRVKHPLDVLSVGDTLDVMVISLD 709

Query: 679 -DRGKIKLSMKVVDQN 693
            +RG+I LS+K +++ 
Sbjct: 710 EERGRIGLSLKRMEKE 725


>gi|293596578|ref|ZP_05262508.2| 30S ribosomal protein S1 [Listeria monocytogenes J2818]
 gi|293590480|gb|EFF98814.1| 30S ribosomal protein S1 [Listeria monocytogenes J2818]
          Length = 439

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    + T   + ID +      S               IT+  +V  + +G+VV+++
Sbjct: 287 EVLEEGQKVTVKVIGIDPENERISLSIKATLPG----PWDGITEKAQVGSVLEGKVVRLV 342

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ ++   ++ LS+K +
Sbjct: 343 TFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEADKRLSLSIKEL 402

Query: 691 DQNTGKP 697
                + 
Sbjct: 403 QDAPVEE 409



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + +     G  +   V +        ++  V ++  ++ E E A +    ++++ E  
Sbjct: 193 HFVEDFADYKGTTLTFKVVEFEP-----ENNRVILSHRAVVETEKASQKQALLSEIKEG- 246

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G V ++ +FGAFV   G  DGLVHISQ+S + +A   +V++EG  V VK++  D  
Sbjct: 247 DVIEGTVQRLANFGAFVDI-GGVDGLVHISQISYKHIATPQEVLEEGQKVTVKVIGIDPE 305

Query: 681 G-KIKLSMKVVDQNTG 695
             +I LS+K       
Sbjct: 306 NERISLSIKATLPGPW 321



 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V   G++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 72  EEGDKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 131

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 132 VEDDILV-LSKRKVDAE 147


>gi|165871608|ref|ZP_02216254.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167634251|ref|ZP_02392573.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|167640274|ref|ZP_02398539.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|170687714|ref|ZP_02878929.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|177653364|ref|ZP_02935574.1| S1 RNA binding domain protein [Bacillus anthracis str. A0174]
 gi|190567361|ref|ZP_03020275.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036044|ref|ZP_03103445.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196046180|ref|ZP_03113407.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|218901448|ref|YP_002449282.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|227812923|ref|YP_002812932.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228925501|ref|ZP_04088594.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228944053|ref|ZP_04106436.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229119911|ref|ZP_04249169.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 95/8201]
 gi|229182642|ref|ZP_04309887.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BGSC 6E1]
 gi|254686597|ref|ZP_05150456.1| S1 RNA binding domain protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723563|ref|ZP_05185350.1| S1 RNA binding domain protein [Bacillus anthracis str. A1055]
 gi|254734925|ref|ZP_05192637.1| S1 RNA binding domain protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739710|ref|ZP_05197403.1| S1 RNA binding domain protein [Bacillus anthracis str. Kruger B]
 gi|254754919|ref|ZP_05206954.1| S1 RNA binding domain protein [Bacillus anthracis str. Vollum]
 gi|164712712|gb|EDR18243.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167511676|gb|EDR87057.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|167530565|gb|EDR93280.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|170668241|gb|EDT18989.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|172081404|gb|EDT66477.1| S1 RNA binding domain protein [Bacillus anthracis str. A0174]
 gi|190561488|gb|EDV15459.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991413|gb|EDX55380.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196022925|gb|EDX61605.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|218538623|gb|ACK91021.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|227002952|gb|ACP12695.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228600837|gb|EEK58412.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BGSC 6E1]
 gi|228663549|gb|EEL19131.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 95/8201]
 gi|228815627|gb|EEM61865.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228834163|gb|EEM79707.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 722

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|302671391|ref|YP_003831351.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316]
 gi|302395864|gb|ADL34769.1| ribosomal protein S1 RpsA [Butyrivibrio proteoclasticus B316]
          Length = 379

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 20/197 (10%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI------PPDQIRNV 566
            + I  +  +   + R +I N    V +E      +    ++   +              
Sbjct: 151 DQEIQFVVTEYNPKRRRYIGNRKMLVSAEKAEAAKKLFDTIKAGDVVDGVVKNVTDFGAF 210

Query: 567 IGMGGKV-IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIEAARE-----MIRSI 613
           I +GG   +  I E +  +V        I D   V + S   ++I  +R+       +  
Sbjct: 211 IDLGGADGLLHISEMSWGRVESPKKVFKIGDTVKVLVKSIDGSKIALSRKFDDENPWKDA 270

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T+   V  + KG+V ++ DFGAFV      D L+H+SQ++ E V K +DV+K G  V  K
Sbjct: 271 TEKYAVGNVVKGKVARMTDFGAFVELEPGIDALLHVSQIAKEHVEKPADVLKVGQEVEAK 330

Query: 674 LLDFD-DRGKIKLSMKV 689
           ++DF+ D  KI LS+K 
Sbjct: 331 IVDFNEDEKKISLSIKA 347



 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 13/211 (6%)

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISE--NIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           MD KV  T+     + +  K   I      +  A    +     ++  +   L+    ++
Sbjct: 70  MDVKVLKTNDADGQVILSYKRLAIDRGNKRIEEAFNNKEVLTAKVVQVLEGGLTVVVDEV 129

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +     +++     + I+ +V +   K          I +  +      
Sbjct: 130 RIFIPASL---VSDSYEKDLSKYQDQEIQFVVTEYNPKR------RRYIGNRKMLVSAEK 180

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E  + + D  +   +  G V  V DFGAF+   GA DGL+HIS++S  RV     V K 
Sbjct: 181 AEAAKKLFDTIKAGDVVDGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPKKVFKI 239

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           GDTV V +   D   KI LS K  D+N  K 
Sbjct: 240 GDTVKVLVKSIDGS-KIALSRKFDDENPWKD 269



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  ++ S +     +  VK G
Sbjct: 8   QMLNESFKTIHTGEVVEGTVIDVKPDEIILNIGYKSDGVLTKNEYSNDNSIDLTTAVKVG 67

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVV 690
           DT+ VK+L  +D  G++ LS K +
Sbjct: 68  DTMDVKVLKTNDADGQVILSYKRL 91


>gi|291563829|emb|CBL42645.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4]
          Length = 359

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 14/187 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVE 579
            ++    R  ++      + ++  +      +VE            I +GG   +  I E
Sbjct: 165 RRRVIGDRKQLIVAKKAEMQKALFEKIHVGDKVEGTVKNVTDFGAFIDLGGADGLLHISE 224

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQV 627
            +  ++        + D  T  I   +  +I  + +   +           V  +  G+V
Sbjct: 225 MSWGRIENPKKVFKVGDKVTALIKDINGEKIALSMKFPETNPWADAAEKYAVGNVVTGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E VAK +DV+  G  +  K++DF++   KI LS
Sbjct: 285 ARMTDFGAFVELEPGVDALLHVSQISREHVAKPADVLSIGQEITAKIVDFNEADRKISLS 344

Query: 687 MKVVDQN 693
           MK ++ +
Sbjct: 345 MKALEAD 351



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 3/142 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           + IP   + +V             +       +      I       +    EM +++ +
Sbjct: 131 IFIPASLVSDVYEKDLSKYADKEIEFVIT-EFNPRRRRVIGDRKQLIVAKKAEMQKALFE 189

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
              V    +G V  V DFGAF+   GA DGL+HIS++S  R+     V K GD V   + 
Sbjct: 190 KIHVGDKVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRIENPKKVFKVGDKVTALIK 248

Query: 676 DFDDRGKIKLSMKVVDQNTGKP 697
           D +   KI LSMK  + N    
Sbjct: 249 DINGE-KIALSMKFPETNPWAD 269



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G+V+ V +    ++     DG++  S+ + E      ++V  G
Sbjct: 8   QMLEESLKTIRTGEVVTGKVIDVKEDEIVLNIGYKSDGIITRSEYTNESNVDLRNLVHVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K++   D  G++ LS K +  + G
Sbjct: 68  DEMEAKVVKVNDGEGQVALSYKRLAADRG 96


>gi|170756770|ref|YP_001780782.1| 30S ribosomal protein S1 [Clostridium botulinum B1 str. Okra]
 gi|169121982|gb|ACA45818.1| ribosomal protein S1 [Clostridium botulinum B1 str. Okra]
          Length = 387

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G++++ 
Sbjct: 104 LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKGEMVK- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + E   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKVVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V ++  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPW 273



 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       ++   ++ D   V  + +G +
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTI 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 351 IKEATEKPKED 361



 Score = 41.4 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|166031925|ref|ZP_02234754.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC
           27755]
 gi|166028378|gb|EDR47135.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC
           27755]
          Length = 359

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVE 579
             +    R  +L        +   +       VE +          I +GG   +  I E
Sbjct: 165 RNRVIGDRRQLLVAEKAEKQKELFEKLHVGDTVEGVVKNVTDFGAFIDLGGVDGLLHISE 224

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQV 627
            +  +V        + D+  V +      +I  + +   S           V  +  G+V
Sbjct: 225 MSWGRVENPKKVFKVGDELKVLVKDIHDTKIALSLKFPESNPWANAAEDYAVGTVITGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S   V K SDV+K G+ V  K++D ++   KI LS
Sbjct: 285 ARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIVDLNEAEKKISLS 344

Query: 687 MKVVDQNTGK 696
           MK ++    +
Sbjct: 345 MKALEAADEE 354



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   LS    +   F P      +     +++     + I
Sbjct: 98  ERLKEAYENHEVLKAPVTQILGGGLSVVVDEARVFIPASL---VSDTYEKDLSKYQDQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E  + + +   V    +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAEKAEKQKELFEKLHVGDTVEGVVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V K GD + V + D  D  KI LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVENPKKVFKVGDELKVLVKDIHDT-KIALSLKFPESNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  S+ + +  A  + +V  G
Sbjct: 8   QMLEESLKTIRNGEVVDGTVIDVKPDEIVLNIGYKADGIITRSEYTNDSNADLTTMVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D + VK+L   D  G++ L+ K +    G
Sbjct: 68  DPMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|221068177|ref|ZP_03544282.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
 gi|220713200|gb|EED68568.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
          Length = 793

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDD 589
           ++ ++     +   Q+      ++ +   P+Q  N    G   I+ I+ E      +   
Sbjct: 588 VVEQIILATGKPVDQIMGRGEVLKSLK--PEQFANDN-FGAVTIKDILGELEKPGRDPRP 644

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D  V   +  + +I+  +E               +G V  V  FGAFV     +DGLVH+
Sbjct: 645 DFVVARFNDGVEDIKDLKE-----------GMTLEGTVSNVAQFGAFVDLGVHQDGLVHV 693

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           SQ+S + +    +VVK G  V VK+L+ D DR +I L+MK +D    +
Sbjct: 694 SQMSHKFIEDAREVVKTGQIVKVKVLEVDVDRKRISLTMK-LDAAPAR 740


>gi|83588965|ref|YP_428974.1| RNA binding S1 [Moorella thermoacetica ATCC 39073]
 gi|83571879|gb|ABC18431.1| RNA binding S1 [Moorella thermoacetica ATCC 39073]
          Length = 130

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  +  FGAFV   G   GLVHIS+++   V   +D VKE D V VK+++ D
Sbjct: 5   VGTVLEGVVSGITKFGAFVELPGGLTGLVHISEVADTYVKDVNDYVKEKDRVRVKVINID 64

Query: 679 DRGKIKLSMKVVDQN 693
           ++GKI LS+K  + +
Sbjct: 65  EKGKIGLSIKRANPD 79


>gi|296113088|ref|YP_003627026.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
 gi|295920782|gb|ADG61133.1| 30S ribosomal protein S1 [Moraxella catarrhalis RH4]
 gi|326560081|gb|EGE10471.1| 30S ribosomal protein S1 [Moraxella catarrhalis 46P47B1]
 gi|326561667|gb|EGE12004.1| 30S ribosomal protein S1 [Moraxella catarrhalis 103P14B1]
 gi|326571140|gb|EGE21164.1| 30S ribosomal protein S1 [Moraxella catarrhalis BC7]
 gi|326573434|gb|EGE23402.1| 30S ribosomal protein S1 [Moraxella catarrhalis 101P30B1]
 gi|326575670|gb|EGE25593.1| 30S ribosomal protein S1 [Moraxella catarrhalis CO72]
          Length = 557

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 87/212 (41%), Gaps = 11/212 (5%)

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            +  +      G T +  +      S   +    +  +  +  I +++    +     + 
Sbjct: 70  DVVVEAVDNGMGQTVLSREKAKREESWRALEQLHENDEIVKGVISSKVKGGFTVEIGSVR 129

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            F P   +   P  +  ++ G         +E    K++   +  V    + +    +A 
Sbjct: 130 AFLPGSLVDVRPVRETTHLEGKE-------LEFKVIKIDKQRNNIVVSRRAVMEAENSA- 181

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    +  + E  ++ +G V  + ++GAFV   G  DGL+HI+ ++ +R+   S+ V+ G
Sbjct: 182 ERDELLAKLEEGMEV-EGIVKNLTEYGAFVDL-GGIDGLLHITDMAWKRIKHPSEAVEVG 239

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             + VK+L FD +R ++ L +K +  +    +
Sbjct: 240 QDLKVKVLKFDRERNRVSLGLKQLGADPWTEV 271



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V  I K +V  + D+G F       +GLVH+S++    +    S VV+ 
Sbjct: 266 DPWTEVEQTYPVGTITKARVTNLTDYGCFAEIAEGIEGLVHVSEMDHTNKNIHPSKVVQV 325

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D +R +I L +K    N    
Sbjct: 326 GDEVNVMVLEIDGERRRISLGIKQTMPNPWAE 357



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG V +V   GA +      +G + ++ ++ ER    S V+  GD V  K++  D + 
Sbjct: 454 IVKGTVKEVDAKGAVITLADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKS 513

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  D+   +
Sbjct: 514 RNISLSIKAKDEADER 529



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                    E  +   G +  + DFG F+   G  DGLVH+S +S        + +    
Sbjct: 354 PWAEFDKNHEKGQKISGTIKSITDFGLFIGLEGGIDGLVHLSDISWT--ESGEEAIRNYS 411

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GDTV   +L  D +  +I L +K ++ + 
Sbjct: 412 KGDTVEAVVLSVDAEANRISLGIKQLNSDP 441


>gi|238027085|ref|YP_002911316.1| RNA binding S1 [Burkholderia glumae BGR1]
 gi|237876279|gb|ACR28612.1| RNA binding S1 [Burkholderia glumae BGR1]
          Length = 776

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 13/120 (10%)

Query: 586 NIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDF 633
            +DD   +      LAE+E      R   ++ T    V K+         +G V  V  F
Sbjct: 610 FVDDRFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLLPGMVLEGVVTNVAAF 669

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  R +I L+M++ D+
Sbjct: 670 GAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLEVDVKRQRIALTMRLADE 729


>gi|284040497|ref|YP_003390427.1| RNA binding S1 domain protein [Spirosoma linguale DSM 74]
 gi|283819790|gb|ADB41628.1| RNA binding S1 domain protein [Spirosoma linguale DSM 74]
          Length = 595

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N  +D  V      + +   A+     I + 
Sbjct: 159 QIDVKPIRDF----DIFVGKKMEVKVVKINYANDNVVVSHKVLIEKDLEAQRAQ--ILNN 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G +  + +FG F+   G  DGL+HI+ +S  R++  S+V+     V V +LD
Sbjct: 213 LEKGQVLEGVIKNMTNFGVFIDL-GGVDGLLHITDISWGRISHPSEVLHLDQKVNVVVLD 271

Query: 677 FD-DRGKIKLSMKVVDQNTGKPIV 699
           FD D+ +I L MK +  +    +V
Sbjct: 272 FDEDKKRISLGMKQLQAHPWDALV 295



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 607 REMIRSITDVPEVNKIY------KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAK 659
           +++       PE+   Y      KG V  + +FG F+      DGLVH+S LS  ++V  
Sbjct: 371 KQLTEDPWTRPELRTKYAVGTKHKGMVRNLTNFGLFLELEEGIDGLVHVSDLSWTKKVKH 430

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            SD +K GD + V +L+ D D  ++ L  K +++N  
Sbjct: 431 PSDFIKVGDELEVLVLELDVDNRRLALGHKQLEENPW 467



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++ +  +V    KG++V V D+GAF+      +GL+H+S++S  + +    + +K 
Sbjct: 289 HPWDALVEDIQVGSKVKGKIVNVADYGAFLEIQPGVEGLIHVSEMSWSQHLRNPQEFLKV 348

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V  ++L  D +  K+ L +K + ++  
Sbjct: 349 GDEVEAQVLTLDRNDRKMSLGIKQLTEDPW 378



 Score = 44.5 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D     +  S+ E     E+  +     +  ++  G VV + D    ++     DGLV  
Sbjct: 18  DNKGFGSGYSVEEHNRMLELYDNTLSEVKEKEVVMGTVVGITDREVLLNIGFKSDGLVPA 77

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           S+          D +K GD + V + +  D  G++ LS K
Sbjct: 78  SEFR-----DMPD-LKMGDEIEVYVENQEDPNGQLVLSRK 111


>gi|170759608|ref|YP_001786542.1| 30S ribosomal protein S1 [Clostridium botulinum A3 str. Loch Maree]
 gi|169406597|gb|ACA55008.1| ribosomal protein S1 [Clostridium botulinum A3 str. Loch Maree]
          Length = 387

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G+++R 
Sbjct: 104 LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKFVKDLNVFKGEIVR- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + E   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKVVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V ++  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPW 273



 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       ++   +  D   V  + +G V
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTAKDKYTVGSVVEGIV 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVEKGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 351 IKEATEKPKED 361



 Score = 41.4 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|15838756|ref|NP_299444.1| transcription-related protein [Xylella fastidiosa 9a5c]
 gi|9107302|gb|AAF84964.1|AE004030_10 transcription-related protein [Xylella fastidiosa 9a5c]
          Length = 772

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P+Q  +    G   IR I+++      ++  G                E I+      +
Sbjct: 605 KPEQFTDTN-FGIPTIRDIIKE------LEKPGRDPRPEFKAVRFTEGVENIK----DLK 653

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I +G V  V  FGAFV     +DGL+HIS L+   V    D+VK GD V VK+L+ D
Sbjct: 654 PGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEID 713

Query: 679 -DRGKIKLSMKVVDQNTGK 696
             R +I L+ ++ ++   +
Sbjct: 714 VPRKRIALTCRLHEETPPE 732


>gi|196250872|ref|ZP_03149557.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|196209601|gb|EDY04375.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 121

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               +   I KG+V  +  +GAFV   G   GL+HIS++S   V    D V  GD V VK
Sbjct: 1   MPTMKRGAIVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVK 60

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGK 696
           +LD D   G+  LS+K ++    K
Sbjct: 61  VLDVDYKAGRASLSLKALEPGREK 84


>gi|328957351|ref|YP_004374737.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
 gi|328673675|gb|AEB29721.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
          Length = 406

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ ++  +      V I+      I S          E  + + +  
Sbjct: 150 VDVHFVEDFSSYKGQTLKFKI------VEIEPSENRLILSHKAVVEAENEEKKKDLLNHL 203

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               I KG++ ++ +FGAF+   G  DGLVHISQ++ E V   +DV+  G+ V VK+L  
Sbjct: 204 VEGDIVKGKIARLTNFGAFIDL-GGVDGLVHISQIAYEHVKDPADVLTVGEEVNVKILSV 262

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           + + G+I LS+K         I
Sbjct: 263 NEEEGRISLSIKETLPGPWDDI 284



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   K+   ++   +I+ S    +    + I        V  +  G V ++  FGAFV 
Sbjct: 253 EEVNVKILSVNEEEGRISLSIKETLPGPWDDIEERAA---VGSVLDGLVKRLTSFGAFVE 309

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
                +GLVHISQ+S   +A   +V+ EGD + VK+L+ +    ++ LS+K +++   +P
Sbjct: 310 VFPGVEGLVHISQISHNHIATPHEVLNEGDEIKVKVLEVNPTDQRLSLSIKALEEKPNQP 369


>gi|89094012|ref|ZP_01166956.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
 gi|89081686|gb|EAR60914.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
          Length = 559

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 14/224 (6%)

Query: 476 LSDISGDEDHLGH---MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           L+D +  E  +G    +  +      G T +  +      +  ++    +  +  +  I 
Sbjct: 54  LNDANELEIQIGDEVKVALEAVEDGFGETRLSREKAKRAEAWEVLQTKFEAEETVKGCIS 113

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            ++    + S   +  F P      +    +R+V  + GK +   + +   K N   +  
Sbjct: 114 GKVKGGFTVSINNIQGFLPGSL---VDVRPVRDVDHLEGKELEFKLIKLDPKRN---NIV 167

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V   +       A R+    +  + E  ++ KG V  + ++GAF+   G  DGL+HI+ +
Sbjct: 168 VSRRAVLQEANSAQRD--ELLATLDEGQEV-KGFVKNLTNYGAFIDL-GGVDGLLHITDM 223

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + +R++  S+++  GD + VK++ FD + G+I L +K +  +  
Sbjct: 224 AWKRISHPSEMLNPGDEITVKIIKFDKESGRISLGLKQLSSDPW 267



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  V   GA V      +G + +S++S +RV   S V+  GD V  K++  D R 
Sbjct: 453 IVTGKVTSVDAKGAVVELAEGIEGTLKVSEISVDRVEDASSVLNVGDEVEAKIVTLDRRN 512

Query: 682 K-IKLSMKVVDQNTGK 696
           + I LS+K  +Q   K
Sbjct: 513 RVINLSIKAKEQAEEK 528



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + ++  + D+G F       +GLVH+S++S   +    S VV+ GD V V +LD D +R 
Sbjct: 281 QARITNLTDYGCFASIEDGVEGLVHVSEMSWTNKNIHPSKVVQIGDEVEVMILDVDEERR 340

Query: 682 KIKLSMKVVDQNTG 695
           +I L +K    N  
Sbjct: 341 RISLGIKQCTANPW 354



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  +    G  +  ++      +++D++                     +  +  
Sbjct: 316 IHPSKVVQI----GDEVEVMI------LDVDEERRRISLGIKQCTAN----PWVTFAEQF 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
                  G +  + DFG FV      DGLVH+S ++ E  A     +   K+G+ V   +
Sbjct: 362 AAGDKVTGTIKTITDFGIFVGLQEELDGLVHMSDITWE--ADAEAALRQFKKGEEVEAVI 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 420 LSIDAEKERISLGIKQLESDP 440


>gi|110632678|ref|YP_672886.1| RNA binding S1 [Mesorhizobium sp. BNC1]
 gi|110283662|gb|ABG61721.1| RNA binding S1 [Chelativorans sp. BNC1]
          Length = 772

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 22/163 (13%)

Query: 557 AIPPDQIR---NVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA- 606
           A+ P+       ++   G+ +R ++  +G       +V  D+   +      +AE+E   
Sbjct: 566 AVHPEAYHLARRIVAACGRDVRSLMGDSGALKALDPRVFADERFGLPTVRDIIAELEKPG 625

Query: 607 ---REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
              R   R+ T    ++ I         +G V  V  FGAFV     +DGLVH+SQL+  
Sbjct: 626 RDPRPAFRTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANR 685

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V    +VVK GD V V++L+ D  R +I LSM+       +P
Sbjct: 686 FVKDAHEVVKAGDVVKVRVLEVDIKRNRISLSMRSDGDAGSRP 728


>gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Spirochaeta coccoides DSM
           17374]
 gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Spirochaeta coccoides DSM 17374]
          Length = 571

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +NID +        +L+      +   S      V  + K  V K+  FGAF+      +
Sbjct: 256 INIDPE----TQKVNLSLKHMHEDPWSSFEKNFNVGDVVKAPVTKLTTFGAFIEIAPGIE 311

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL HIS+LS  +RV    DV+  GD V  K+L +D D+ ++ L +K +++N    I
Sbjct: 312 GLAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLKQLEENPWDSI 367



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 522 QQAKRGRLHILNEMSKVLSESRL-----QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           ++A   R  +L +  KV+          +   F P  +      +   ++IG+       
Sbjct: 107 RKAAEDRSPVLGKFVKVIKGGYEIDLGGEYRGFCPMSKADVSRVEDPESLIGLSDY---F 163

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA-REMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           I+++  A         +K   S    +E   +E   +      +  + +G V     FGA
Sbjct: 164 IIDKFHA------GTKLKSVVSRREYLEKRIKENKETFFSSVHIGDVVQGVVKSFTSFGA 217

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           F+   G  DGL+HI+ +S   V +  D VK+G T+ ++L++ D +  K+ LS+K + ++ 
Sbjct: 218 FIDLGGF-DGLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPETQKVNLSLKHMHEDP 276

Query: 695 G 695
            
Sbjct: 277 W 277



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 22/182 (12%)

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKV----- 585
             +  +      +     +++  P  ++        I  G + +  I E +  K      
Sbjct: 270 KHMHEDPWSSFEKNFNVGDVVKAPVTKLTTFGAFIEIAPGIEGLAHISELSWTKRVNNPK 329

Query: 586 NIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           ++ D G V  A     +++  R              SI D   V K     VVK+ + GA
Sbjct: 330 DVLDVGDVVEAKILGYDLDKKRVSLGLKQLEENPWDSIDDRYPVGKTLTRPVVKITNSGA 389

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           F+      DG +HI  +S  E+V   S   KEGD V V +   + +  +I+LS+K ++ N
Sbjct: 390 FIGLEDGIDGFLHIDDISWTEKVRNMSSFAKEGDMVDVVVTRVEPENRRIRLSVKQLEDN 449

Query: 694 TG 695
             
Sbjct: 450 PW 451



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLV---HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           G+V  V DFG FV   G  +GL+   H+     E         K GD V   ++D +   
Sbjct: 466 GEVTNVTDFGVFVKVLGGIEGLISKFHLVGPDEEYNDSVLKNFKVGDVVTAAVMDVNPST 525

Query: 682 -KIKLSMKVV 690
            K+ LS+K +
Sbjct: 526 QKLSLSIKEL 535


>gi|315122096|ref|YP_004062585.1| 30S ribosomal protein S1 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495498|gb|ADR52097.1| 30S ribosomal protein S1 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 576

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     I  S  A +E +R   RS      E  ++ +G V  + D+GAFV   G  DGL+
Sbjct: 166 DKRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGIVKNITDYGAFVDLSG-VDGLL 224

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           H++ ++  R+   S V+  G  V V+++  + +  +I L MK +++N    I
Sbjct: 225 HVTDIAWHRIQHPSKVLSVGQQVKVQIIRINQETHRISLGMKQLEKNPWDDI 276



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-R 680
             G V  + D+GAF+      +GL HIS++S  ++    S ++  G  V V +L+ +  R
Sbjct: 286 VTGVVTNITDYGAFIELEAGIEGLAHISEISWTKKNIHPSKILSVGQEVEVVILEINPVR 345

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L +K    N  K
Sbjct: 346 KRISLGLKQALINPWK 361



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+SG +   H+  + +      S + ++   +K+  I    +     
Sbjct: 203 GIVKNITDYGAFVDLSGVDGLLHVTDIAWHRIQHPSKVLSVGQQVKVQIIR---INQETH 259

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +       + +  ++  + T  V  +      I    G+ G  +  I E + 
Sbjct: 260 RISLGMKQLEKNPWDDIKDRYVEESKVTGVVTNITDYGAFIELEAGIEG--LAHISEISW 317

Query: 583 AKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEVNKIYKGQV 627
            K NI     + +       I               +A     ++ ++        +G++
Sbjct: 318 TKKNIHPSKILSVGQEVEVVILEINPVRKRISLGLKQALINPWKAFSESHPPGTEVEGEI 377

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+      DG+VH+S L   R   +      +GD V   +LD D ++ +I L
Sbjct: 378 KNKTEFGLFIGLDDNLDGMVHLSDLDWNRPGERVIGEYNKGDVVKAIVLDVDIEKERISL 437

Query: 686 SMKVV 690
            +K +
Sbjct: 438 GIKQL 442



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           N +   +V+ + + G  V           +  S LS +R  +      +G  V  +++  
Sbjct: 459 NTVVSCEVIAINEGGIEVTLIDHEGITSFIRRSDLSRDRADQDPGRFSKGQIVDARVVGT 518

Query: 678 DDR-GKIKLSMKVVD 691
             +  K+ LS+K ++
Sbjct: 519 SRKDNKVSLSIKALE 533


>gi|81429212|ref|YP_396213.1| hypothetical protein LSA1600 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610855|emb|CAI55907.1| Putative RNA-binding protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 147

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV     G+V  + +FGAFV     + GLVHIS++S   +    DV+  GD V VK+
Sbjct: 1   MAVEVGSKVPGKVTGITNFGAFVDLGEGKTGLVHISEVSDSYIKDIHDVLTVGDEVTVKV 60

Query: 675 LDFDDRGKIKLS-MKVVDQN 693
           +  D  GKI LS  K VDQ 
Sbjct: 61  MS-DQNGKIGLSIRKAVDQP 79


>gi|23005787|ref|ZP_00048431.1| COG2183: Transcriptional accessory protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 125

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R 
Sbjct: 7   LEGVVTNVAAFGAFVEIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLAVDVPRK 66

Query: 682 KIKLSMKVVDQNTGKP 697
           +I LSM++ D   G P
Sbjct: 67  RISLSMRLDDPIDGTP 82


>gi|300113866|ref|YP_003760441.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
           C-113]
 gi|299539803|gb|ADJ28120.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
           C-113]
          Length = 786

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A   A  +      +  +   I +G V  V  FGAFV     +DG
Sbjct: 634 DILRELEKPGRDPRPAFKTAVFKEEIQTLEDLKPGMILEGVVTNVTAFGAFVDVGVHQDG 693

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           LVHIS L+   V    ++V  GD V VK+L+ D+ R +I L+M+
Sbjct: 694 LVHISALADRFVKDPHEIVSAGDIVKVKVLEIDNVRKRIGLTMR 737


>gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
 gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
          Length = 481

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I  +  AK+   D     +  S  + +E  +  +R+      +  ++  G V  +++FG
Sbjct: 163 YIGRELEAKIIELDKNRNNVVLSRRSYLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  DGLVH+S+LS + +   ++VV+ GD V V++L+ D  R ++ LS+K   ++
Sbjct: 223 AFVDL-GGVDGLVHVSELSWKHIDHPAEVVEVGDEVTVEVLEVDMSRERVSLSLKATMED 281

Query: 694 TGK 696
             +
Sbjct: 282 PWQ 284



 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++      + ++  G+V K++ FGAFV      +GLVHIS+L+   +     VVK G
Sbjct: 281 DPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHIEAPEQVVKVG 340

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           D  +VK++D D +R +I LS+K  ++
Sbjct: 341 DGAFVKIIDIDLERRRISLSLKQANE 366



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G VVKV      +      +G++   +LS +      D+VK GD V   +L  
Sbjct: 33  KEGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIAPEDIVKIGDKVEALVLQM 92

Query: 678 -DDRGKIKLSMKVVD 691
            D  G++ LS K   
Sbjct: 93  EDKEGRLLLSKKRAQ 107


>gi|119952930|ref|YP_945139.1| 30S ribosomal protein S1 [Borrelia turicatae 91E135]
 gi|119861701|gb|AAX17469.1| SSU ribosomal protein S1P [Borrelia turicatae 91E135]
          Length = 555

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            + I + I +G K+   I++             V      L+          S+    +V
Sbjct: 225 VENIEDFIRVGDKLRLKIIKL-----------NVNAVKMELSLKALKTNPWDSVEAKYKV 273

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD 678
             I KG+VVK++ FGA V       G +HIS  S  RV     ++VK G  V VK+L+ D
Sbjct: 274 ESIVKGKVVKILPFGAVVELDSEISGFIHISNFSWVRVIKSPQELVKVGQIVEVKILEID 333

Query: 679 DRG-KIKLSMKVVDQNTGKPIV 699
               KI L +K V++N    + 
Sbjct: 334 KENQKISLGIKQVNENPWNNLA 355



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E      + +        I  G V ++ D+ A +       G++H 
Sbjct: 158 DGLRLILDRRTLERERELVKKKELVSSYNEGDIVDGVVERITDYSAIIKVKNLVLGVLHK 217

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             ++  RV    D ++ GD + +K++  + +  K++LS+K +  N    +
Sbjct: 218 RNIAFNRVENIEDFIRVGDKLRLKIIKLNVNAVKMELSLKALKTNPWDSV 267



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +   GAFV      D  +    +S        +  K G ++  K+++ D  +  IKL +
Sbjct: 370 NITKTGAFVSIEEGIDAYISKFDISWIDEVNPEEYFKLGSSISGKVIELDAKKQNIKLGI 429

Query: 688 KVVDQNTGKP 697
           K +++N    
Sbjct: 430 KQLEENPWDD 439


>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
          Length = 224

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 74/209 (35%), Gaps = 14/209 (6%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R+   +  LL R  GS+ F++GDT  +  V  G  E                   +N  
Sbjct: 17  LREYGCEQSLLSRPDGSATFLQGDTSVLAGV-YGPAE------------IKVSREIHNKA 63

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   + G P+ +E  H +L R     V+  +     ++ IV +I    GS     +
Sbjct: 64  TLEVILRPKTGLPAIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQIISDAGSLLSCCL 123

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             + + LMDAG+P+     G+   L  DG+  +  +D    E     + F +  T+  + 
Sbjct: 124 NAACMGLMDAGLPMRSLFCGVTCALDNDGNITLDPNDRQQKESRAV-VTFAIESTERKVL 182

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLH 530
                           + A Q A      
Sbjct: 183 MTSSRGLYSAAELQQCIAAAQLASEKLFQ 211



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 70/214 (32%), Gaps = 32/214 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +K   +  +   L V  + +T                P
Sbjct: 31  DGSATFLQGDTSVLAGVYGPAEIKVSREIHNKATLEVILRPKT--------------GLP 76

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    ++I  +   +        T + I +       S     + AA   LM +GLP
Sbjct: 77  AIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQIISDAGSLLSCCLNAACMGLMDAGLP 136

Query: 145 FEGPVVGAQVDYINGQYV-LNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDA 203
                 G      N   + L+P   + + S          AV+     A + +E  VL  
Sbjct: 137 MRSLFCGVTCALDNDGNITLDPNDRQQKES---------RAVVTF---AIESTERKVLMT 184

Query: 204 IIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
              G      + + I+  A   A E +    +DF
Sbjct: 185 SSRGLYSAAELQQCIA--AAQLASEKLFQFYRDF 216


>gi|332525945|ref|ZP_08402086.1| putative transcription accessory protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332109496|gb|EGJ10419.1| putative transcription accessory protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 779

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 14/159 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           ++ +M         +L      +  +   P+   +       V   + E      +   D
Sbjct: 581 VVQKMLAATGRPVQELMGRAEVLRTLK--PELFADDKFGAITVKDILAELEKPGRDPRPD 638

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
            TV   +  + +I+             +   + +G V  V  FGAFV     +DGLVH+S
Sbjct: 639 FTVARFNEGVEDIK-----------DLQPGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVS 687

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           QLS + V    +VVK G TV V++L+ D  R +I L+MK
Sbjct: 688 QLSNKFVNDAREVVKTGQTVKVRVLEVDLARKRISLTMK 726


>gi|301051978|ref|YP_003790189.1| putative transcription accessory protein [Bacillus anthracis CI]
 gi|300374147|gb|ADK03051.1| probable transcription accessory protein, S1 RNA-binding domain
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 722

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNIELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|90409187|ref|ZP_01217301.1| hypothetical protein PCNPT3_07710 [Psychromonas sp. CNPT3]
 gi|90309713|gb|EAS37884.1| hypothetical protein PCNPT3_07710 [Psychromonas sp. CNPT3]
          Length = 723

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 24/245 (9%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           A+G+  +     +L+ I+G    +     +   T+   T+    MK+  +       A Q
Sbjct: 490 AIGVDVNRASVQLLTFIAGLNKSIAENIVQYRDTNGPFTSRSSLMKVPRLG----AKAYQ 545

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           QA      I        S    +      R   +AI  +     +    + ++ +   T 
Sbjct: 546 QAAGFLRIIEGIDPLDNSAVHPEAYALVSR---IAIDQNCTVKALLKNSQALKMLDIDT- 601

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIR-------SITDVPEVNKIYK-----GQVVKV 630
               I +          ++E+ A R   R          ++ +++ +Y      G +  V
Sbjct: 602 ---FISEQFGRLSIEQIISELAAPRRDPRPDFCTVSYSDEINKISDLYTDMEIQGVITNV 658

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             FGAFV     +DGL+H+SQL+ + V    +VVK G  V V++L  D +R +I LS+++
Sbjct: 659 TSFGAFVDIGVHQDGLIHLSQLANKFVKDPFEVVKTGQIVQVRVLSVDSERKRISLSLRL 718

Query: 690 VDQNT 694
            D N 
Sbjct: 719 QDHNA 723


>gi|325115120|emb|CBZ50676.1| putative S1 RNA-binding domain containing protein [Neospora caninum
           Liverpool]
          Length = 390

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD----------VPEVNKIYKGQVV 628
           ++   KV   +DG +++   S+ + +         T            PE++ I++G V 
Sbjct: 96  QEIWVKVLSQEDGKLRLCMKSVNQHDGTERESLRQTFSHRGEGGGIKTPELDSIHQGTVR 155

Query: 629 KVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           ++ DFGAFV   G  RDGL+HIS +S++++ +  DV+  GD VWVK+   +  GK  L M
Sbjct: 156 RIQDFGAFVSIDGFDRDGLLHISCISSQKLDRVDDVLAVGDKVWVKVTKVEAGGKYGLDM 215

Query: 688 KVVDQNTGKP 697
           + + Q  G  
Sbjct: 216 RGISQKDGAD 225



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           ++GL+HIS++S +RV    DV+  G  +WVK+L   + GK++L MK V+Q+ G  
Sbjct: 71  KEGLLHISRISDQRVENVEDVLAVGQEIWVKVLS-QEDGKLRLCMKSVNQHDGTE 124


>gi|291550296|emb|CBL26558.1| Ribosomal protein S1 [Ruminococcus torques L2-14]
          Length = 358

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V  +  G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G 
Sbjct: 266 PWVNAAEDFAVGTVVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDVLAIGQ 325

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +  K++D ++   KI LSMK ++ +  + 
Sbjct: 326 EITAKIVDLNEAEKKISLSMKALEADNAEE 355



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   +  +  ++  F P      +     +++    G+ I
Sbjct: 98  ERLREAYENHEVLKATVTQILGGGICTTVDEVRVFIPASL---VSDSYEKDLSKYEGQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E  + +     V    +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAERAEKQKELFAKLNVGDTVEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AFV   G  DGL+HIS++S  RV     V   GDT+ V + D  D  KI LS+K  + N 
Sbjct: 209 AFVDL-GGVDGLLHISEMSWGRVDNPKKVFHVGDTLKVLVKDIHDT-KIALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  S+ S ++    + VV  G
Sbjct: 8   QMLEESFKTIHNGEVVEGTVIDVKPDEIILNIGYKADGIITKSEYSNDQSLDLTTVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+ VK+L   D  G++ L+ K +    G
Sbjct: 68  DTMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|238916339|ref|YP_002929856.1| hypothetical protein EUBELI_00373 [Eubacterium eligens ATCC 27750]
 gi|238871699|gb|ACR71409.1| Hypothetical protein EUBELI_00373 [Eubacterium eligens ATCC 27750]
          Length = 763

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVN 620
           ++ + +G+G   +  IV++             K       E+                  
Sbjct: 596 KMADELGIGTMTLEDIVKELE-----------KPGRDPRDEMPKPILRKDVLDMKDLTPG 644

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD- 678
            I KG V  V+DFGAFV     +DGLVHISQ+S+ +RV    DVV  GD V V+++D D 
Sbjct: 645 MILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDI 704

Query: 679 DRGKIKLSMKVVDQNTG 695
            + +I LSM ++D+   
Sbjct: 705 PKARISLSM-ILDEKEA 720


>gi|126697382|gb|ABO26648.1| exosome component 5 [Haliotis discus discus]
          Length = 211

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 89/222 (40%), Gaps = 17/222 (7%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
             +R +++ +G+L R  G+  F +GDT  +  V  G  E +     ++    +   +   
Sbjct: 2   TDLRPMTSDLGVLTRPDGTVTFTQGDTGILAAV-YGPGEVK-----IAREILDRATVEVI 55

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P +       G P   E  H R  R  +  V+  +      + +  +  +  GS    
Sbjct: 56  YKPKS-------GLPGCSERLHERYIRNTVETVILASLHPRSCISVTVQELQDSGSLLAC 108

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           +V  + LAL+DA V +   +AG+ + + ++G+  +++ D+  + + +  + F +      
Sbjct: 109 SVNAACLALLDACVNMKYLIAGVYVIIDREGNT-VLVPDLKQEGEKVAGVTFVLENQTYS 167

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           +  M      G ++       L  A+     I +     + +
Sbjct: 168 VVTM---SSRGSLTTEQFHRCLLHAQAAAKQIFSFYRIAVEK 206



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 23/223 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS---LKDGQDFFPLTVNYQERTYAV 70
           RP+  + G + R  DG V  T G+T +LA V         ++  D   + V Y+ ++   
Sbjct: 5   RPMTSDLGVLTR-PDGTVTFTQGDTGILAAVYGPGEVKIAREILDRATVEVIYKPKS--- 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                        P  +E L  R I  ++  +        + + + V +     S    S
Sbjct: 61  -----------GLPGCSERLHERYIRNTVETVILASLHPRSCISVTVQELQDSGSLLACS 109

Query: 131 MVAASAALMLSGLPFEGPVVGAQV-DYINGQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
           + AA  AL+ + +  +  + G  V     G  VL P L ++      +   +     +V+
Sbjct: 110 VNAACLALLDACVNMKYLIAGVYVIIDREGNTVLVPDLKQEGEKVAGVTFVLENQTYSVV 169

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEP 229
            +    + L+ +     ++      K +        +    +P
Sbjct: 170 TMSSRGS-LTTEQFHRCLLHAQAAAKQIFSFYRIAVEKKMSKP 211


>gi|297582398|ref|YP_003698178.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297140855|gb|ADH97612.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 140

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    +G++  +  FGAFV   G + GLVHIS+++   V    DV+  GDTV VK+L  
Sbjct: 4   EIGSKVEGKITGITHFGAFVELPGKKTGLVHISEVADGYVENIKDVLTVGDTVTVKVLKI 63

Query: 678 DDRGKIKLS-MKVVDQNTGK 696
            D GKI LS  K  ++  G+
Sbjct: 64  ADDGKIALSIRKAAEKPAGE 83


>gi|254796773|ref|YP_003081609.1| ribosomal protein S1 [Neorickettsia risticii str. Illinois]
 gi|254590014|gb|ACT69376.1| ribosomal protein S1 [Neorickettsia risticii str. Illinois]
          Length = 553

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  +          L  F P   +   P      ++G+  K     ++    K+    
Sbjct: 135 VILYTIKSGCIVEVEGLNAFLPNSHLDVRPVSDPATLVGVKLKFRILKMDPKTGKIF--- 191

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-----GARD 644
              V    +  A  EAAR    S         I  G+V  +  +G FV        G  D
Sbjct: 192 ---VSRKKALGAVHEAARSEYISTIKE---GDIIDGRVKSIASYGVFVQIHESDKVGVVD 245

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL++++ +S  RV   S +   G  V VK++  D ++G+I L +K + +N  K I
Sbjct: 246 GLLYVNDISWARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDI 300



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + I+       +Y G V  V D+G FV      +GLVH  ++S  R  K   +     
Sbjct: 296 PWKDISKKYTPGNVYPGVVTSVEDYGIFVRLEEGVEGLVHSGEISWTR-EKP--LFLPNS 352

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
            V V LL  D+ G KI LS+K   +N  K
Sbjct: 353 KVNVMLLSVDEEGHKIALSVKQCSENPWK 381


>gi|197103656|ref|YP_002129033.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1]
 gi|196477076|gb|ACG76604.1| 30S ribosomal protein S1 [Phenylobacterium zucineum HLK1]
          Length = 569

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    ++ + E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 174 GNIVVSRRAILEEARAEQRTELVSQLQEG-EVREGVVKNITDYGAFVDL-GGIDGLLHVT 231

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV   S V+  GDTV V+++  + +  +I L MK +  +  
Sbjct: 232 DMSWKRVNHPSQVLAVGDTVKVQIVKINPETQRISLGMKQLQSDPW 277



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSD 662
           +A      +  +   +    +G+V    +FG F+      DG+VH+S L       +   
Sbjct: 358 QAMANPWEAFLEAHPIGSTVEGEVKNATEFGLFIGLDNDIDGMVHLSDLDWAVSGEEAMA 417

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              +GD V  ++LD D ++ +I L +K +  + 
Sbjct: 418 RYNKGDVVKARVLDVDVEKERISLGIKQLSGDP 450



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 275 DPWDGVEAKYPVGAKFTGRITNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 334

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + ++ L +K    N  +
Sbjct: 335 SQEVEVVVLDVDPSKRRVSLGLKQAMANPWE 365



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           F          +  S LS +R  +  +    GD V  ++ + D    ++ LS+K ++   
Sbjct: 478 FGEDEAPMTAFIRKSDLSRDRADQRPERFAVGDRVDAQITNVDKAARRVSLSIKSLEMAE 537

Query: 695 GKPIV 699
            K  +
Sbjct: 538 EKEAI 542


>gi|290955864|ref|YP_003487046.1| transcriptional accessory protein [Streptomyces scabiei 87.22]
 gi|260645390|emb|CBG68476.1| putative transcriptional accessory protein [Streptomyces scabiei
           87.22]
          Length = 794

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGL H+S LS   V    DVVK GD V VK+LD D  
Sbjct: 659 MVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKVKVLDVDIP 718

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L++++ D+   K
Sbjct: 719 RKRISLTLRLDDEAAPK 735


>gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 245

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 21/206 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R ++    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 7   RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 56

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +             +  ++G P   E  +  + +R +  +         T  I+ ++   
Sbjct: 57  ENPEKACIEVVWKPKTGQIGKP---EKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSD 113

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED------HL 486
           DG+     +  +  AL+DA +P+      I   L + G  ++IL     +E       +L
Sbjct: 114 DGALLPCAINAACAALVDAAIPLKHLAVAICCCLTESG--YVILDPTKVEEQKMKAFAYL 171

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGI 512
              +  ++    G + M+ ++   GI
Sbjct: 172 VFPNSAISIIPEGSSHMEGELMEHGI 197



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 27/188 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+   + G+T VLA V   +      +  +   + V ++ +T  +GK           
Sbjct: 29  AHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVVWKPKTGQIGK----------- 77

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             E E  +  ++ R+++   L +      T +II V+  D    P   ++ AA AAL+ +
Sbjct: 78  -PEKEYEV--ILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPC--AINAACAALVDA 132

Query: 142 GLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSE 197
            +P +   V         G  +L+P   E+Q       L       A+ ++   ++ +  
Sbjct: 133 AIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFP--NSAISIIPEGSSHMEG 190

Query: 198 DVVLDAII 205
           +++   II
Sbjct: 191 ELMEHGII 198


>gi|168178576|ref|ZP_02613240.1| ribosomal protein S1 [Clostridium botulinum NCTC 2916]
 gi|226948426|ref|YP_002803517.1| 30S ribosomal protein S1 [Clostridium botulinum A2 str. Kyoto]
 gi|182670770|gb|EDT82744.1| ribosomal protein S1 [Clostridium botulinum NCTC 2916]
 gi|226844497|gb|ACO87163.1| ribosomal protein S1 [Clostridium botulinum A2 str. Kyoto]
          Length = 387

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +   + +   +          +  F P      I    ++++    G++++ 
Sbjct: 104 LEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPAS---QIDNKYVKDLNVFKGEMVK- 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
                G  + +D      + SS + + E   +    + +  E  +  +G V ++  FGAF
Sbjct: 160 -----GRLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGLVH SQLS  RV   S+VV  GD V V +LDFD D  KI LS+K V ++  
Sbjct: 215 VDIGGM-DGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPW 273



 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G V      V+I D   V +        + A       ++   ++ D   V  + +G +
Sbjct: 231 WGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTI 290

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           VK+++FGAFV      +GLVHIS+++ E +AK S+ +  GD V VK+L+ + D  ++ LS
Sbjct: 291 VKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLS 350

Query: 687 MKVVDQNTGKP 697
           +K   +   + 
Sbjct: 351 IKEATEKPKED 361



 Score = 41.4 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            S    ++   E I S        ++ KG+V+ V D  A ++     DG++   ++    
Sbjct: 1   MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
                D++ + D + V +L+  D  G + LS K  +
Sbjct: 61  EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAE 96


>gi|77163718|ref|YP_342243.1| 30S ribosomal protein S1 [Nitrosococcus oceani ATCC 19707]
 gi|76882032|gb|ABA56713.1| SSU ribosomal protein S1P [Nitrosococcus oceani ATCC 19707]
          Length = 561

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 22/275 (8%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPV----AGIAMGLVKDGDDFIILS-DISGDEDH 485
           ++D   +  ++   ++      + I   V    AG     V   + F     +++  E  
Sbjct: 13  QADMPMAPGSIVTGTV------MEIRSDVVIVNAGFKSEGVISAEQFRDEKGNLNISEGD 66

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           L  +  +      G T +           N +  A +  +     +  ++    +     
Sbjct: 67  LVEVALEAIEDGFGETRLSRQKAKEARVWNDLEGAFEAGETITGVLTGKVKGGFTVDLNG 126

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   + A P      +     +     +++    +       V   +   AE  A
Sbjct: 127 VRAFLPGSLVDARPVRDTAYLESKELEFKLIKLDRRRNNI------VVSRRAVMEAEYSA 180

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            RE + S     E  K  KG V  + D+GAFV   G  DGL+HI+ +S +R+   S+VV 
Sbjct: 181 EREALLSS---LEEGKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHPSEVVN 236

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            GD + V++L FD +R ++ L +K + ++  K + 
Sbjct: 237 IGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDLA 271



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQV 627
              ++     VNI DD TV++               +   +  + +           G+V
Sbjct: 225 WKRIKHPSEVVNIGDDITVQVLKFDRERQRVSLGLKQMGEDPWKDLARRYLDGTRLFGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             V D+G FV      +GLVH+S++    +    S +V+ G+ V V +LD D +R +I L
Sbjct: 285 TNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKMVQVGEEVEVMVLDIDEERRRISL 344

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 345 GMKQCLPNPWEE 356



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G+ +  +V      ++ID++                           
Sbjct: 316 IHPSKMVQV----GEEVEVMV------LDIDEERRRISLGMKQCLPN----PWEEFAHRY 361

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
             +    G++  + DFG FV   G  DGLVH+S +S    A   +++   K+GD V   +
Sbjct: 362 NKDDRVAGEIKSITDFGIFVGLEGGIDGLVHLSDISWS--ASGEEIIRDYKKGDQVEAVV 419

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 420 LAIDPERERISLGVKQLEDDP 440



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S         I KG V  V   GA +      +G +  S+++ ER+      +  G
Sbjct: 439 DPFSSYIATCPKGSIVKGIVKVVDTRGAVIELAEGVEGHLRASEIARERIDDARTSLNVG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D++  K    D + + I LS++  D
Sbjct: 499 DSIEAKFTGIDRKNRVITLSVRAKD 523


>gi|229089378|ref|ZP_04220653.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-42]
 gi|228693959|gb|EEL47647.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-42]
          Length = 722

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSQETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|254756962|ref|ZP_05208990.1| S1 RNA binding domain protein [Bacillus anthracis str. Australia
           94]
          Length = 722

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETTVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|116515126|ref|YP_802755.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256980|gb|ABJ90662.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 556

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 17/241 (7%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           + LV  G        +   ++  G ++ K+      I  + +D    G  E I+  + ++
Sbjct: 35  IVLVDAGLKSESSIPLEQFKNSQGEVEIKIG----DIVDVSLDAIEDGFGETIL--SREK 88

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           AKR    I  E +     +   +           +  + IR  +      IR I E    
Sbjct: 89  AKRHESWIKLETAHKKLTNITGI-INGKVKGGFTVELNDIRAFLPGSLVDIRPIRETQHL 147

Query: 584 K--------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           +        + +D      + S             + +    + + I +G V  + D+GA
Sbjct: 148 EGKKLKFKVIKLDQKRNNVVVSRKAVIELENNAERKRLLKNLQEDTIVEGTVKNLTDYGA 207

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           F+   G  DGL+HI+ ++ +RV   S++V   D + VK+L FD+   ++ L +K +  + 
Sbjct: 208 FIDL-GGVDGLLHITDMAWKRVKHPSEIVNISDKIKVKILKFDEEKIRVSLGLKQLGTDP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV--------PEVNKIY 623
            +    V+     VNI D   VKI      +I  +  + +  TD         PE NK Y
Sbjct: 222 DMAWKRVKHPSEIVNISDKIKVKILKFDEEKIRVSLGLKQLGTDPWINLSKRYPEGNK-Y 280

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G+V  + D+G FV      +GLVH+S++    +  + + VV  GD ++V +L+ D +R 
Sbjct: 281 LGRVTNLTDYGCFVEIEEGIEGLVHVSEMDWTNKNIQPTKVVSSGDQIYVSILNIDEERR 340

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L +K    N  K 
Sbjct: 341 RISLGIKQCKINPWKE 356



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +NID++           +I   +E         +  K++ G++  + DFG F+   G  D
Sbjct: 333 LNIDEERRRISLGIKQCKINPWKEFSEKNV---KGTKVF-GKIKSITDFGIFIGLEGGID 388

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS  ++  K     K+G  +   +L  D +R +I L +K + ++ 
Sbjct: 389 GLVHLSDLSWFKKGEKAVKKYKKGQDIEAMVLQVDSERERISLGIKQLQEDP 440


>gi|266622707|ref|ZP_06115642.1| protein YhgF [Clostridium hathewayi DSM 13479]
 gi|288865544|gb|EFC97842.1| protein YhgF [Clostridium hathewayi DSM 13479]
          Length = 713

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   +G+G   ++ IV++             K A     E+               + 
Sbjct: 594 KKLAEELGIGEITLQDIVKELE-----------KPARDPRDEMPKPILRTDVLDMKDLQP 642

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + KG V  V+DFGAFV     +DGLVHISQ+S + +    + V  GD V VK++  D 
Sbjct: 643 GMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSEKFIKHPLEAVSVGDIVEVKVISVDV 702

Query: 679 DRGKIKLSMK 688
            + +I L+MK
Sbjct: 703 AKKRIALTMK 712


>gi|156551017|ref|XP_001600416.1| PREDICTED: similar to putative S1 RNA binding domain protein
           [Nasonia vitripennis]
          Length = 260

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +VN+I+ G++  V ++GAFV   G  + GLVH SQ+S+  V    +V++ G+ +W K++
Sbjct: 4   CQVNQIFLGEISSVQNYGAFVKIPGCPQQGLVHRSQVSSAHVDDVGEVLQRGERIWCKVI 63

Query: 676 DFDDRGKIKLSMKVVDQNTGKPI 698
              + GKI LSMK+V+Q  GK +
Sbjct: 64  SIGEDGKIALSMKLVNQGNGKDL 86


>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
          Length = 243

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 21/206 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R ++    +L R HGS+ + +GDT+ +  V  G +         +GT++N
Sbjct: 5   RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAV-YGPK---------AGTKKN 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           +             +  ++G P   E  +  + +R +  +         T  I+ ++   
Sbjct: 55  ENPEKACIEVVWKPKTGQIGKP---EKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSD 111

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED------HL 486
           DG+     +  +  AL+DA +P+      I   L + G  ++IL     +E       +L
Sbjct: 112 DGALLPCAINAACAALVDAAIPLKHLAVAICCCLTESG--YVILDPTKVEEQKMKAFAYL 169

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGI 512
              +  ++    G + M+ ++   GI
Sbjct: 170 VFPNSAISIIPEGSSHMEGELMEHGI 195



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 27/188 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+   + G+T VLA V   +      +  +   + V ++ +T  +GK           
Sbjct: 27  AHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVVWKPKTGQIGK----------- 75

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             E E  +  ++ R+++   L +      T +II V+  D    P   ++ AA AAL+ +
Sbjct: 76  -PEKEYEV--ILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPC--AINAACAALVDA 130

Query: 142 GLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSE 197
            +P +   V         G  +L+P   E+Q       L       A+ ++   ++ +  
Sbjct: 131 AIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFP--NSAISIIPEGSSHMEG 188

Query: 198 DVVLDAII 205
           +++   II
Sbjct: 189 ELMEHGII 196


>gi|320139405|gb|EFW31283.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA131]
          Length = 133

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV     + GLVHIS+++   V    + +  GD V VK+L  
Sbjct: 4   EVGNKLKGKVTGIKKFGAFVELSEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSI 63

Query: 678 DDRGKIKLSMKVVD-----QNTGKP 697
            D GKI LS+K        Q+T KP
Sbjct: 64  ADDGKISLSIKKAKDRPRRQHTSKP 88


>gi|291562742|emb|CBL41558.1| Transcriptional accessory protein [butyrate-producing bacterium
           SS3/4]
          Length = 716

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 14/171 (8%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
                  L  + +   E           +        ++   + +G + ++ IV++    
Sbjct: 558 PESYKAALELLKRAKIEPEEIAKGGAAGISKKITDYKKLSEELEVGEETLKDIVKELE-- 615

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
                    K A     E++              +   I KG V  V+DFGAFV     +
Sbjct: 616 ---------KPARDPREEMQKPILRTDVLDMKDLKPGMILKGTVRNVIDFGAFVDIGVHQ 666

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           DGLVHISQ+S + +    + V  GD V VK+L  D  + +I LSM ++D+ 
Sbjct: 667 DGLVHISQMSRKYIKHPLEAVSVGDIVEVKVLGVDMAKKRISLSM-ILDEE 716


>gi|332798196|ref|YP_004459695.1| RNA binding S1 domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695931|gb|AEE90388.1| RNA binding S1 domain protein [Tepidanaerobacter sp. Re1]
          Length = 131

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            EV +I +G+V  +  FGAFV       GLVHIS+++   V   +D +KE D + VK++ 
Sbjct: 3   VEVGQILEGRVTGITKFGAFVEISEGVTGLVHISEVADSFVKDVNDFLKENDIIKVKVIS 62

Query: 677 FDDRGKIKLSMKVVDQNT 694
               GK+ LS++   +N+
Sbjct: 63  ISSDGKVSLSIRKTKENS 80


>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
           50983]
 gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
           50983]
          Length = 248

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 9/242 (3%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR--EDEQY 362
             +  +  R+DGR    +R ++ ++G      GS+   +G T+ +  V  G R  +    
Sbjct: 6   EFLTYEGFRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHV-FGPRPLQAASV 64

Query: 363 VD---SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                +++        + Y     AT +  R     R         +R I   +      
Sbjct: 65  GRAAGTMARQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFP 124

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              + +   I + DGS+  A V  ++ AL+DAG+PI    +   +GLV +    +   D+
Sbjct: 125 KSCIDVHLTILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIV---DL 181

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +  E                   +      G I+      A   A  G +  +  M   +
Sbjct: 182 NHAESEGCGGAVVTVAVYQRRKELNYLCLEGKINIESFESAADLAIEGAVTAVRAMRTFI 241

Query: 540 SE 541
            E
Sbjct: 242 QE 243



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 22/173 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-----------GQDFFPLTVN 62
           R L L+ G  A  +DG+     G T V+A V   R L+             Q    + V 
Sbjct: 24  RHLTLKIGD-APSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMARQGEAIVNVV 82

Query: 63  YQERTYA-VGKIPGGYLRRESRPTENEILISRMI-DRSIRPLFSKCYKNETQVIINVMQH 120
           Y+  ++A + +       R S  TE ++ + R+I D  +  +F K       V + ++Q 
Sbjct: 83  YRTSSFATIDRKRRTTGDRNS--TERQLWLQRIIQDAVLTEMFPKSC---IDVHLTILQE 137

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQ-YVLNPRLDEDQG 172
           D   S     + AA+AAL+ +G+P +       V  +N Q  +++    E +G
Sbjct: 138 DG--SALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHAESEG 188


>gi|303232061|ref|ZP_07318764.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513167|gb|EFL55206.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 632

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + ID+     + S         +  +        V + YKG V K+M +GAFV
Sbjct: 423 TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVGENYKGIVRKIMPYGAFV 482

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +  K+ LS+K + ++  
Sbjct: 483 DI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDPESNKLSLSLKALTKSPW 540



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVITGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK++  + D  K+ L++  + +
Sbjct: 597 GQEVEVKIISLNKDEKKLGLALTELME 623



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PNSAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEPIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
           DMAPP forming) [Ruminococcus sp. 18P13]
          Length = 661

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +              V  +    VV +  FGAF       DGL+HISQ++ +RV    D+
Sbjct: 551 KKEDNPWEQFLAKYHVGDVVDATVVSITQFGAFAQIMDGVDGLIHISQIANQRVDNVKDI 610

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +  G  V VK+++ D ++ +I +SM+ +
Sbjct: 611 LSVGQQVQVKIVEIDPEKKRISISMRAL 638



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   ++   +   S  A  +A ++  R+      EV +++ G+V  +  +GAFV   G 
Sbjct: 445 KIIEVNEQRRRAVGSIKAVAKAQKDAARAKFWETAEVGQVFTGEVKSLTSYGAFVDL-GG 503

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
            DG+VHIS+LS +R+   S+VVK GD + V +   D    +I L  K  + N  +
Sbjct: 504 IDGMVHISELSWKRIKHPSEVVKVGDMLEVYIKALDPEANRISLGYKKKEDNPWE 558



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I  G      I+++    +         IA ++L E       +          +  KG 
Sbjct: 262 ITAGASTPAYIIKEVQTTMT-------DIAKNNLDEDIDFEAALEQSFKKIHTGERVKGY 314

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKL 685
           VV V +  A V       G V + +L+ +   K +D+V+ GD + + +    D  G + L
Sbjct: 315 VVSVNNNEAIVDVGTKHTGYVPLDELTDDPSKKPADLVQPGDELDLIVTKINDPEGYVLL 374

Query: 686 SMKVVDQNTG 695
           S + VD+  G
Sbjct: 375 SKRRVDELVG 384


>gi|42522733|ref|NP_968113.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
 gi|39573929|emb|CAE79106.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
          Length = 398

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 81/229 (35%), Gaps = 19/229 (8%)

Query: 472 DFIILSDISGDEDHLGH------MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           D +IL+    DE+          +D  V     G   +     +   S + +  A     
Sbjct: 62  DGMILTKDLLDENKEVKYKVGDYIDCVVTSIKGGEVRLAKKGSMNA-STDSLEDAFDMEL 120

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
                +    +     S      F P  +I +         +G     +           
Sbjct: 121 PVEGRVTETCNGGFRVSIQGKTAFCPISQIDSRFVQDANEYVGKKFDFMIT--------- 171

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            +D  G   + S          E   +     +   + +G++V++  FGAFV      +G
Sbjct: 172 QLDPKGRNIVVSRRKVLDLQKAENEGTFMLKHQPGALLEGKIVRLEKFGAFVELEAGIEG 231

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLL---DFDDRGKIKLSMKVVD 691
           L+H+S+LS  RV    +VV  G  V VKL+   + D R KI LS+K  D
Sbjct: 232 LIHVSELSWSRVHDPKEVVMAGQPVTVKLIKMEEVDGRLKISLSLKQAD 280


>gi|77361757|ref|YP_341332.1| hypothetical protein PSHAa2854 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876668|emb|CAI87890.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 774

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN------------KIYKGQVVKVMDFG 634
           IDD   +   +  ++E++      R      E               I +G V  V +FG
Sbjct: 604 IDDKFGLPTVTDIISELDKPGRDPRPEFKTAEFKAGVEKISDLKPGMILEGVVSNVANFG 663

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           AFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ D  R +I  +M++ D
Sbjct: 664 AFVDVGVHQDGLVHISSITNKFISDPREVVKAGDIVKVKVVEVDAARKRISFTMRLDD 721


>gi|303229902|ref|ZP_07316678.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515458|gb|EFL57424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 632

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + ID+     + S         +  +        V + YKG V K+M +GAFV
Sbjct: 423 TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVGENYKGIVRKIMPYGAFV 482

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +  K+ LS+K + ++  
Sbjct: 483 DI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDPESNKLSLSLKALTKSPW 540



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVITGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK++  + D  K+ L++  + +
Sbjct: 597 GQEVEVKIISLNKDEKKLGLALTELME 623



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PNSAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEPIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|302390898|ref|YP_003826718.1| RNA binding S1 domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302202975|gb|ADL11653.1| RNA binding S1 domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 119

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV  + +G+V  + +FGAFV   G   GL+HIS+++   V   +D ++  + + VK+
Sbjct: 1   MSVEVGSVVEGKVSGITNFGAFVELSGGETGLIHISEIADTYVKDVNDYLEMNEEIEVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           +  DD GKI LS+K ++    KP
Sbjct: 61  ISIDDDGKIGLSLKQLEGEDRKP 83


>gi|241663192|ref|YP_002981552.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12D]
 gi|240865219|gb|ACS62880.1| RNA binding S1 domain protein [Ralstonia pickettii 12D]
          Length = 788

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I  +              A  +         +   + +G V  V  FGAF++    +D
Sbjct: 636 VDILSELEKPGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFINIGVHQD 695

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GLVH+S LST+ V    +VVK G  V VK+++ D  R +I L+M++ D+ 
Sbjct: 696 GLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMRLSDEP 745


>gi|218885413|ref|YP_002434734.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756367|gb|ACL07266.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 564

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 94/268 (35%), Gaps = 34/268 (12%)

Query: 455 ISKPVAGI--AMGLVKDGDDFIILSDISGDEDHLGHMDFKVA---------GTDSGITAM 503
           +   V  I      V  G     L D    ED  G++   V             + I   
Sbjct: 71  VKATVVAIGEDTVFVATGAKVDGLVDRKELEDAEGNLPVAVGDVLELYVVSANANEIKLS 130

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           +     G +    M  AL         +        +   L+   F P  ++   P  + 
Sbjct: 131 R--AMGGQVGLAQMEDALNAGIPIEGKVTGPCKGGFNVEVLKRRAFCPASQMDLRPGAEP 188

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            +  G   + +   +EQ G  +         + S  +       E + ++ +  +   + 
Sbjct: 189 DSFTGQTFQFLITRLEQNGRNI---------VVSRRMLLEREQAESLSALMENVKEGDVL 239

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF------ 677
           +G V ++  FGAFV      +G+VH+S+LS  RV +  + V  GD V VK+L        
Sbjct: 240 EGTVARLAPFGAFVEIAPGLEGMVHVSELSWSRVQQADEAVSVGDKVRVKVLGIAGAEEG 299

Query: 678 ----DDRG--KIKLSMKVVDQNTGKPIV 699
               D R   +I LS++ V  +  + + 
Sbjct: 300 KGGKDSRKGPRISLSIRQVSGDPWQDVA 327



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 105/270 (38%), Gaps = 28/270 (10%)

Query: 449 MDAGVPISKPVAG-IAMGLVKDGDDFIILSDISGDEDH-LGHMD-FKVAGTDSGITAMQM 505
           ++AG+PI   V G    G   +          S  +       D F        IT ++ 
Sbjct: 146 LNAGIPIEGKVTGPCKGGFNVEVLKRRAFCPASQMDLRPGAEPDSFTGQTFQFLITRLEQ 205

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           + +   +S  +++   Q      L    +   VL  +   +    P    + I P     
Sbjct: 206 NGRNIVVSRRMLLEREQAESLSALMENVKEGDVLEGT---VARLAPFGAFVEIAPGLEGM 262

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA------------------AR 607
           V     ++    V+Q    V++ D   VK+   + AE                     + 
Sbjct: 263 V--HVSELSWSRVQQADEAVSVGDKVRVKVLGIAGAEEGKGGKDSRKGPRISLSIRQVSG 320

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + + D  + ++I  G+V ++  FGAF+      +GLVH+S++S   R+ K  + V  
Sbjct: 321 DPWQDVADRLDADQILTGKVTRLAPFGAFIEVLPGVEGLVHLSEMSWTRRINKPEEAVTP 380

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G+TV V++ + D  R ++ LS++  + +  
Sbjct: 381 GETVSVRIKELDPARKRLSLSLRDAEGDPW 410


>gi|323703064|ref|ZP_08114719.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531958|gb|EGB21842.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 667

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E + AR+    +  + E   + KG V ++ +FGAFV   G  DGL+HIS+
Sbjct: 440 KVVVSRKAVLEEQYARKRAELLASIQEGQTV-KGIVRRLTNFGAFVDL-GGLDGLLHISE 497

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +S  R+   S+VV  GD + V +L  D +  KI L  K +  N    +
Sbjct: 498 MSWYRINHPSEVVNVGDEIEVMVLKVDRENEKISLGRKQILPNPWDNV 545



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           ++  FGAFV      +GLVHIS L+   VAK  +VV EG+ + VK+L  D    +I+LS+
Sbjct: 561 RLAPFGAFVQLEPGVEGLVHISHLADRHVAKPDEVVTEGEEIDVKVLSVDPAEKRIRLSI 620

Query: 688 KVVD 691
           + V+
Sbjct: 621 REVN 624



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I ++   ++                     P+  ++ KG VV+V      V      +G+
Sbjct: 261 IIEEVKRRMKELDQMTNGEEEMKDAMEVKSPQAGELIKGVVVQVGPDEVMVDVGAKSEGV 320

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLS 686
           V   +L+   V    DVVK GD +   ++   D+ GK+ LS
Sbjct: 321 VPRKELACYEVDNPQDVVKVGDEIECMVVKAEDNEGKLILS 361



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 26/197 (13%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM------AIPPDQIRNVIGMGGK 572
            A+ +  + R+  L++M+    E +  +   +P+   +       + PD++   +G   +
Sbjct: 259 DAIIEEVKRRMKELDQMTNGEEEMKDAMEVKSPQAGELIKGVVVQVGPDEVMVDVGAKSE 318

Query: 573 VIRGIVEQTGAKVNIDDD----GTVKIASSSLAEIEA-----------AREMIRSITDVP 617
            +    E    +V+   D    G         AE              A +   S+    
Sbjct: 319 GVVPRKELACYEVDNPQDVVKVGDEIECMVVKAEDNEGKLILSKVRADAEKAWGSLEQAM 378

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V +V+  G  V         +  S +    V   S  +     V V++++ 
Sbjct: 379 ENGTVIKGVVREVVKGGLIVDI--GVRAFLPASLVDRGYVEDLSKYLN--QEVEVRVIEM 434

Query: 678 DD-RGKIKLSMKVVDQN 693
           +  R K+ +S K V + 
Sbjct: 435 NKQRKKVVVSRKAVLEE 451


>gi|332653049|ref|ZP_08418794.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332518195|gb|EGJ47798.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 648

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               E  K Y G V  +  +GAFV   G  DG+VHIS+LS  R+   S+VVK GDTV V 
Sbjct: 472 WAEIEDGKRYTGTVKSLTSYGAFVDI-GGVDGMVHISELSWSRIKHPSEVVKVGDTVDVY 530

Query: 674 LLDFD-DRGKIKLSMKVVDQNTG 695
           ++  D ++ KI L MK   Q+  
Sbjct: 531 VISADPEKKKISLGMKDHSQDPW 553



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             + +++     T   +V  +   ++VK+M FGAF       DGL+HISQ++  R+ K  
Sbjct: 545 MKDHSQDPWTVFTSTYQVGDVANVRIVKLMTFGAFAEIVPGVDGLIHISQIADHRIEKPG 604

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DV+ EGD V VK+ D D +  K+ LS++
Sbjct: 605 DVLAEGDKVDVKITDVDMENKKVSLSIR 632



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 4/189 (2%)

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL-GEFTPRVEIMAIPPDQI 563
            D   G  S+         A+  ++ ++ +     ++   ++  E  P V+++    D  
Sbjct: 190 FDTICGATSKRQEEAHQFAAQCDKMVVIGDGKSSNTKRLAEICRESCPDVQLIERAAD-- 247

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            ++  +    + GI         I  +   K++   +   ++  E++             
Sbjct: 248 LDLSRLAQAEVVGITAGASTPAWIIKEVCDKMSDEIMEIEKSFAELLEESIKTLNTGDKV 307

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682
            G VV +      V       G + +S+L+ +  AK  D+VK GD +   ++   D  G 
Sbjct: 308 TGTVVAITPTEIQVDLGTKHAGYIPVSELTDDPTAKVEDLVKVGDEIETFVVRVNDQEGV 367

Query: 683 IKLSMKVVD 691
           + LS K +D
Sbjct: 368 VTLSKKRLD 376


>gi|92116616|ref|YP_576345.1| RNA binding S1 [Nitrobacter hamburgensis X14]
 gi|91799510|gb|ABE61885.1| RNA binding S1 [Nitrobacter hamburgensis X14]
          Length = 778

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I  +          A   A  +         +   I +G V  V  FGAFV     +D
Sbjct: 616 VDILRELEKPGRDPRPAFKAAVFKEGIETLKDVKPGMILEGAVTNVAAFGAFVDIGVHQD 675

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GL+HIS +S   V     VVK GD V VK+L+ D  R +I L++++ D+  GK
Sbjct: 676 GLIHISAMSKSFVKDPRAVVKSGDVVKVKVLEVDVARKRIALTLRLDDELGGK 728


>gi|229495637|ref|ZP_04389366.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406]
 gi|229317407|gb|EEN83311.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406]
          Length = 583

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+       +I   +E    K+N +    V      +      ++  R I   
Sbjct: 146 QIDVRPIRDY----DALIDKTMEFKIVKINQEQKNVVVSHKILVEAELEQQK--RDIISK 199

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  ++ FG FV   G  DGL+HI+ LS ERV+  S+VV+    + V +LD
Sbjct: 200 LEKGQVLEGTVKNILPFGVFVDL-GGVDGLIHITDLSWERVSHPSEVVELDQKINVVILD 258

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
           FD+ + +I L +K +  N    +
Sbjct: 259 FDENKTRIALGLKQLTPNPWDNL 281



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 26/257 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIG 510
           + +G +K      ++ D+ G E  L      V              +  I  +  + K  
Sbjct: 118 VILGFIKSRTKGGMIVDVFGVEAFLPGSQIDVRPIRDYDALIDKTMEFKIVKINQEQKNV 177

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
            +S  I+V A +  ++ R  I       + E    +    P    + +    +  +I + 
Sbjct: 178 VVSHKILVEA-ELEQQKRDIISKLEKGQVLE--GTVKNILP--FGVFVDLGGVDGLIHIT 232

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIY 623
                  V      V +D    V I      +   A            ++    +   + 
Sbjct: 233 DLS-WERVSHPSEVVELDQKINVVILDFDENKTRIALGLKQLTPNPWDNLDPNLKPGDVL 291

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+V  + D+GAFV      +GL+H+S++S  + +    D +K G+ V   +L  D +  
Sbjct: 292 KGKVELITDYGAFVEIAPGIEGLIHVSEMSWAQHLRSAQDFLKVGEEVEAVILTLDREER 351

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L MK +  +    I
Sbjct: 352 KMSLGMKQLTPDPWADI 368



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I +   V   ++ +V    +FG FV      DGL+H+S LS  ++V   S+V + 
Sbjct: 363 DPWADIEERYPVGSRHQAKVRNFTNFGVFVEIEEGVDGLIHLSDLSWTKKVKHPSEVTEI 422

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K  ++N  
Sbjct: 423 GAMIEVEVLEIDKENRRLSLGHKQTEENPW 452


>gi|168334506|ref|ZP_02692672.1| 30S ribosomal protein S1 [Epulopiscium sp. 'N.t. morphotype B']
          Length = 373

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 11/188 (5%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S + +    +  +   + + + +   L+ S   +  F P  +I     + + + +G    
Sbjct: 105 SYDDIEKMFKNKEIVTVKLKDVIKGGLTTSIKGVRAFIPGSQITDTYVEDLHSYVGKSID 164

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           V   I+E    K        + ++  +LA+     +    +  + E  K Y G++ K+M+
Sbjct: 165 V--QIIEFVPQKR------KLIVSGKALAKQRRLEKRQARLDQLQEGEK-YIGKITKLMN 215

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV      +GL+H S LS  R+    D+V+EG  V V ++  D + GKI L++K ++
Sbjct: 216 YGAFVDL-DGIEGLIHNSDLSWSRIKHPKDIVQEGQEVEVSIISIDRENGKIALALKDIN 274

Query: 692 QNTGKPIV 699
            +  +  V
Sbjct: 275 NDPWENTV 282



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 567 IGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           I     +++   E   + ++ID ++G + +A   +       +   +     E  ++ KG
Sbjct: 239 IKHPKDIVQEGQEVEVSIISIDRENGKIALALKDINN-----DPWENTVANLEEGQLVKG 293

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
            V +   FGAFV      +GL+HISQ+ST R  K  DV+  G  V VK++  D    +I 
Sbjct: 294 IVTRFALFGAFVRIADGVEGLIHISQISTPRPTKPQDVLTSGQEVEVKIIKIDKAEKRIS 353

Query: 685 LSM 687
           LS+
Sbjct: 354 LSL 356



 Score = 37.6 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I+DD T+    S + +  A                I K  V  V + G         D  
Sbjct: 8   IEDDLTMADFMSEVDKTMAKIHR----------GDIRKATVQVVEENGIXASIGYHTDAY 57

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
           +   + S     K+   VK GD   V +L  DD  G + +S K V+  
Sbjct: 58  LPWREYSNREFDKSE--VKIGDEFNVSILRLDDGDGNVLISKKKVENE 103


>gi|42526523|ref|NP_971621.1| tex protein, putative [Treponema denticola ATCC 35405]
 gi|41816716|gb|AAS11502.1| tex protein, putative [Treponema denticola ATCC 35405]
          Length = 817

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP----- 617
           I +VI    +V   +  +   K NI D     I           RE              
Sbjct: 580 IYDVIHKNEEVSGELRSEIKTKYNIGDQTINDIIEELKKPNRDPREDCPKPIMQQGVLQF 639

Query: 618 ---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V    KG++  V+DFGAFV        L+HIS++S   ++   + VK GD V  K+
Sbjct: 640 EDLKVGMTVKGKIKNVVDFGAFVDLGIKETALLHISEMSDSFISDPLEAVKVGDIVECKI 699

Query: 675 LDFD-DRGKIKLSMKV 689
           +  D DR +I LS K 
Sbjct: 700 ISLDEDRRRISLSRKT 715


>gi|23099255|ref|NP_692721.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831]
 gi|22777484|dbj|BAC13756.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831]
          Length = 376

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           ++D      I S      +  +     +    E  ++ +G V ++ +FGAFV   G  DG
Sbjct: 151 DLDRSQNRVILSHRAIVEDEEKNRKNDVLQSLEPGQVIEGTVQRITNFGAFVDL-GGVDG 209

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           LVHISQL+ E V KTSDVV EGD + V++L  D D  +I LS K         +
Sbjct: 210 LVHISQLAHEHVEKTSDVVSEGDKIKVEVLSVDLDNERISLSHKNTLPGPWANV 263



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +  +V    +G V +++ FGAFV      +GLVHISQ++   +    +V++ G 
Sbjct: 259 PWANVEEQVKVGSTIEGTVKRLVSFGAFVELLPGVEGLVHISQIANRHIGTPQEVLEIGQ 318

Query: 669 TVWVKLLDFDDR-GKIKLSMK 688
           TV VK+LD  ++  +I LS+K
Sbjct: 319 TVQVKVLDVSEQDQRISLSIK 339



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           K+ D    V      +G++ I +LS+  V  T+DV+ EGDTV +K+   DD   I LS +
Sbjct: 23  KLEDKQVLVDIGYKTEGILPIGELSSLHVEATTDVLTEGDTVTLKVKKIDDDE-IILSKR 81

Query: 689 VVDQNTG 695
            +D  T 
Sbjct: 82  AIDSETA 88


>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
          Length = 256

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 20/242 (8%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED--EQYV 363
            +L   +R DGR     R    + G +    GS+    G T+ IV V  G RE    Q  
Sbjct: 25  RLLKDGIRSDGRQLLECRLAFMKTGAVNAAAGSAYAEFGSTKVIVSV-FGPRESSKAQIY 83

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTAQFPYT 422
                +         +F   +T    ++      RE  +  +  +A+   +        T
Sbjct: 84  -----SDTGRLNCSVSFATFSTPIRGKLSQGTEHRE--YSTMLHKALEGAVMLNTFPKAT 136

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + + + + ES G      +  ++LAL DAG+ +   V+ +++  +       ++ D + +
Sbjct: 137 VDVFALVLESGGGDLPVVITCATLALADAGIMMFDVVSAVSVSSIGKS----LIIDPTTE 192

Query: 483 EDHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           E++       VA T   + IT +   +  G  S   +  AL+        +   M   L 
Sbjct: 193 EENCQDGGLMVACTPSRNEITQL---IITGEWSSTRVSEALELCLDACSKLAAIMRSCLK 249

Query: 541 ES 542
           E+
Sbjct: 250 EA 251



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQ---DFFPLTVNYQERTYAV---GKIPGGYLRR 80
           + G+  A +G T V+ +V   R     Q   D   L  +    T++    GK+  G   R
Sbjct: 54  AAGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRLNCSVSFATFSTPIRGKLSQGTEHR 113

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           E        ++ + ++ ++  + +   K    V   V++      P V++   A+ AL  
Sbjct: 114 E-----YSTMLHKALEGAV--MLNTFPKATVDVFALVLESGGGDLPVVITC--ATLALAD 164

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ-GSLDLFVSGTQDA------VLMVELEAN 193
           +G+     V    V  I    +++P  +E+      L V+ T         ++  E  + 
Sbjct: 165 AGIMMFDVVSAVSVSSIGKSLIIDPTTEEENCQDGGLMVACTPSRNEITQLIITGEWSST 224

Query: 194 QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           ++SE     A+    + C  +   +    K  A
Sbjct: 225 RVSE-----ALELCLDACSKLAAIMRSCLKEAA 252


>gi|255325252|ref|ZP_05366358.1| transcriptional accessory protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297817|gb|EET77128.1| transcriptional accessory protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 778

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+S +S + V+   +VV+ G  V VK+++ D +
Sbjct: 641 MILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHKFVSDPHEVVRSGQVVKVKVMEVDVE 700

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I LS + +D   G+P
Sbjct: 701 RQRIGLSFR-LDDEPGQP 717


>gi|149200323|ref|ZP_01877343.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
 gi|149136620|gb|EDM25053.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
          Length = 455

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 101/255 (39%), Gaps = 33/255 (12%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G+V D  D   L DI+   +     D               D    G    + + AL+  
Sbjct: 34  GVVVDKRDNGALIDINYKAEGFVPSDE----------FKNWDAVKVGDELEVYLEALE-- 81

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA------IPPDQIRNV------------ 566
               +  ++     L ++   L + T   +++       +    I +V            
Sbjct: 82  DENSMPEISVARAELEKAWSNLLDNTNEGDLIKGLVKYRVKGGLIVDVGVEAFLPGSHID 141

Query: 567 IGMGGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           IG    +   + ++   K+  I+ D    I S      EA  E   ++  V ++  +  G
Sbjct: 142 IGPVRNLDDFLNQEYEFKILKINQDKNNIIISRRELLEEAREEQKDALLKVIKIGDVLPG 201

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V  + DFGAF+   G  DGL+HI+ +S  R+A  S+++  GDT  V +LD D ++ ++ 
Sbjct: 202 KVKNITDFGAFIDLNGM-DGLLHITDMSWGRIAHPSEMLAIGDTTEVMILDIDEEKKRVS 260

Query: 685 LSMKVVDQNTGKPIV 699
           L +K    +  K I 
Sbjct: 261 LGLKQKSNDPWKDIA 275



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 576 GIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I E+  A + +I +D           +          I     +  I KG+V  +  +G
Sbjct: 327 MIGEEVEAIILDIQEDTRKISLGLRQTQDN----PWEVIARDYPIGSIVKGKVRNLTTYG 382

Query: 635 AFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQ 692
           AFV      DG++HIS +S  ++V   ++V+K+GD V  K+LD D    +I L +K +  
Sbjct: 383 AFVEIKDDIDGMIHISDMSWTKKVNNPAEVLKKGDEVEAKVLDIDPNEQRISLGIKQLSS 442

Query: 693 NTGKPI 698
           +    I
Sbjct: 443 DPWDDI 448



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 577 IVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           I + T   + +ID++               + +  + I     + K   G+VV +M +GA
Sbjct: 241 IGDTTEVMILDIDEEKKRVSLGLKQ----KSNDPWKDIAGRYPLGKKIAGKVVNIMPYGA 296

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           F+      +GL+H+S++S  +R+ + SDV+  G+ V   +LD  +D  KI L ++    N
Sbjct: 297 FIELEDGIEGLIHVSEMSWTKRITRASDVLMIGEEVEAIILDIQEDTRKISLGLRQTQDN 356

Query: 694 TGKPIV 699
             + I 
Sbjct: 357 PWEVIA 362


>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
 gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
          Length = 241

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 13/236 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R+DGR    +R + A++G +    GSS F  G T+ I     G R      D+ SG 
Sbjct: 8   TGLRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQ-IFGPR------DNRSGD 60

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
              +  + + +   A    +   + +RR      + +R     + +       + I   +
Sbjct: 61  NAAEIRVTFEYADFAKVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITV 120

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG-- 487
            + DGS   A +  ++LAL+DAG+P+   V  + + L  D        D    E +    
Sbjct: 121 IQDDGSCQSAAINAATLALIDAGIPMFDFVVSMTVALYDDK----CFLDAGRAESNARFP 176

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            ++  +  + S I +M +  +I   +   ++ A     +    I+ ++ +V S  R
Sbjct: 177 VLEVSIFPSTSEILSMNLTARIEPQASKNLMAAAIDGCKELHAIMQDVVRVASMER 232



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 92/209 (44%), Gaps = 19/209 (9%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYA-VGKIPGGYLRRESRPTE 86
            G+     G+T V+A +   R  + G +   + V ++   +A V       + R  R  E
Sbjct: 34  TGSSHFKIGQTEVIAQIFGPRDNRSGDNAAEIRVTFEYADFAKVPHASDTSMTRRGR--E 91

Query: 87  NEILISRMIDRSI-RPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
           +E+++ R  + +I R LF     ++  + I V+Q D        ++ AA+ AL+ +G+P 
Sbjct: 92  SEVIMKRTFEEAIKRELFP---HSKILIAITVIQDDGSC--QSAAINAATLALIDAGIPM 146

Query: 146 EGPVVGAQVDYINGQYVLNPRLDEDQGS---LDLFVSGTQDAVLMVELEAN---QLSEDV 199
              VV   V   + +  L+    E       L++ +  +   +L + L A    Q S+++
Sbjct: 147 FDFVVSMTVALYDDKCFLDAGRAESNARFPVLEVSIFPSTSEILSMNLTARIEPQASKNL 206

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           +  AI    + CK +   +  + ++ + E
Sbjct: 207 MAAAI----DGCKELHAIMQDVVRVASME 231


>gi|271968816|ref|YP_003343012.1| RNA binding S1 domain-containing protein [Streptosporangium roseum
           DSM 43021]
 gi|270511991|gb|ACZ90269.1| RNA binding S1 domain protein [Streptosporangium roseum DSM 43021]
          Length = 797

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 18/146 (12%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVP 617
            IR VIG  G V+R +  Q      +DD   +   +  L+E+E      R   ++ T   
Sbjct: 578 DIRKVIG-NGTVLRALRPQD----FVDDTFGLPTVTDILSELEKPGRDPRPAFKTATFKE 632

Query: 618 EVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            V K+         +G V  V  FGAFV     +DGLVH+S LS   V    +VVK GD 
Sbjct: 633 GVEKLSDLTPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSHNFVKDPREVVKPGDI 692

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNT 694
           V VK+LD D  R +I L++++ D+  
Sbjct: 693 VRVKVLDVDIPRKRISLTLRLEDEPA 718


>gi|121602294|ref|YP_989553.1| 30S ribosomal protein S1 [Bartonella bacilliformis KC583]
 gi|120614471|gb|ABM45072.1| ribosomal protein S1 [Bartonella bacilliformis KC583]
          Length = 566

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I    E N+I +G V  + D+GAF+   G  DGL+H++
Sbjct: 170 GNIVVSRRTVLEESRAEQRSE-IVQNLEENQIVEGVVKNITDYGAFIDL-GGIDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV+  S+++  G T+ V+++  + D  +I L MK ++ +    I
Sbjct: 228 DMAWRRVSHPSEILTIGQTIKVQIIRINQDTHRISLGMKQLENDPWDSI 276



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+ D           E     +   SI++   V K   G V  + D+G FV      +
Sbjct: 252 IRINQDTHRISLGMKQLEN----DPWDSISEKYPVGKKITGSVTNITDYGCFVEIEPGIE 307

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           GL+H+S++S  ++      ++     V V +L+ D  + +I L +K V +N  
Sbjct: 308 GLIHVSEMSWTKKNIHPGKLLSTSQEVEVAVLEVDPSKRRISLGLKQVSENPW 360



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 94/250 (37%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFIDLGGIDGLLHVTDMAWRRVSHPSEILTIGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ ++    + E  P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLENDPWDSISEKYPVGKKITGSVTNITDYGCFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K NI     +  +      +                 +     + ++   +N  
Sbjct: 313 SEMSWTKKNIHPGKLLSTSQEVEVAVLEVDPSKRRISLGLKQVSENPWVAFSNNFPINSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIETYNKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 41.4 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V+ + D G  +       +  +  + L+ +R  + ++    G  V   +  FD +
Sbjct: 461 VVTCEVIGINDNGIDIKLVNHNLETTIRRTDLARDRDEQRTERFSIGQKVDACITAFDKK 520

Query: 681 GK-IKLSMKVVDQNTGKPIV 699
            + + +S+K ++   GK  V
Sbjct: 521 TRKLSVSIKALEIAEGKEAV 540


>gi|206977103|ref|ZP_03238003.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217957815|ref|YP_002336359.1| S1 RNA binding domain protein [Bacillus cereus AH187]
 gi|206744752|gb|EDZ56159.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217064993|gb|ACJ79243.1| S1 RNA binding domain protein [Bacillus cereus AH187]
          Length = 724

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 131/352 (37%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 392 ESEEFIVDVLQHVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 451

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 452 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 511

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+                 +  I  +++      +    
Sbjct: 512 KTVAKNIVAKREEEGKFTKRTDLKKI------PRLGAKTYEQCIGFLRILEGANPLDRTG 565

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +     +     L  L      + + +LQ            +   ++    G+G   +  
Sbjct: 566 IHPEQYKNVELLLKNLGLSKDDVGQPQLQKSLE-------EVEISKLSQETGVGEPTLVD 618

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 619 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 668

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 720


>gi|161350051|ref|YP_157511.2| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
          Length = 569

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E     + +D      + S      E   E    +    +   + KG V  + D+GAFV 
Sbjct: 160 EFEFKVIKLDRKRNNVVVSRRAVLEETMGEEREKLLANLKEGTVIKGIVKNITDYGAFVD 219

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++ ++ L +K + ++  
Sbjct: 220 L-GGIDGLLHITDLAWRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVSLGLKQLGEDPW 276



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VV+ GD V V +L+ D DR +
Sbjct: 291 GKVTNITDYGAFVEVEQGIEGLVHVSEMDWTNKNIHPTKVVQLGDEVEVMILEIDEDRRR 350

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 351 ISLGMKQCMSNPWDD 365



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P +   V+ +G +V   I+E       ID+D                           
Sbjct: 325 IHPTK---VVQLGDEVEVMILE-------IDEDRRRISLGMKQCMSN----PWDDFAINH 370

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
           +     +GQ+  + DFG F+   G  DGLVH+S LS     +   V   K+GD V   +L
Sbjct: 371 KKGDKVRGQIKSITDFGVFIGLDGGIDGLVHLSDLSWSDTGE-EAVRRFKKGDEVEAVVL 429

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 430 AIDVERERISLGVKQLEGDP 449



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     E N I  G V  V   GA +      +G +  S+ +  RV   + V+KEG
Sbjct: 448 DPFTNFIATHEKNSIVGGTVKSVEARGAVIALNEDVEGYLRASEAAAHRVDDLTTVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
             V V +++ D + + I LS++  DQ
Sbjct: 508 QEVEVMIINVDRKTRSINLSIRAKDQ 533


>gi|331089661|ref|ZP_08338560.1| hypothetical protein HMPREF1025_02143 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405029|gb|EGG84567.1| hypothetical protein HMPREF1025_02143 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 367

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G+V ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  K++D +
Sbjct: 276 VGTVITGKVARMTDFGAFVELAPGVDALLHVSQISREHVEKPSDVLSVGQEITAKIVDLN 335

Query: 679 -DRGKIKLSMKVVDQNTGKP 697
            +  KI LSMK ++ +  + 
Sbjct: 336 EEEKKISLSMKALEADRDEE 355



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  ++ S +     + VV  G
Sbjct: 8   QMLDESFKTIHNGEVVEGTVIDVKPEEIILNIGYKADGIITKNEYSNDPSVDLTKVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+ VK+L   D  G++ L+ K +    G
Sbjct: 68  DTMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Opitutaceae bacterium TAV2]
 gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Opitutaceae bacterium TAV2]
          Length = 555

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    I    ++  + KG V K+  FGAFV      DGLVHISQ+S ER+ K  DV+K
Sbjct: 430 AVDPWSDIDSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQISEERIEKVKDVLK 489

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            G  V  +++  D D  ++ LS+K  + +  +
Sbjct: 490 PGQEVTARVIKIDRDERRLGLSIKAANYSPEQ 521



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   I   PP  +   +G          +    K+N +    V      + +  +
Sbjct: 120 VDAFMPASHIDIQPPKNLDQYVGQT-------YDFKVLKINQERKNIVLSRRELIEQQRS 172

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             E  R++ +  +  ++ KG V  + DFGAF+   G  DGL+HI+ +S  R+A  S+++K
Sbjct: 173 --EKRRNLLESIQPGQVRKGVVKNITDFGAFIDLDGM-DGLLHITDMSWGRIAHPSEMLK 229

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +G+ + V +++ + D+ ++ L +K   +N    I
Sbjct: 230 QGEEIQVMIIEVNRDKERVSLGLKQTTKNPWDEI 263



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 92/259 (35%), Gaps = 30/259 (11%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           +  G+VK+  DF    D+ G           +     G  A   +M   G    +M++ +
Sbjct: 187 VRKGVVKNITDFGAFIDLDG-----MDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEV 241

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRG 576
            + K      L    +       ++ +  P    +      + P      I  G + +  
Sbjct: 242 NRDKERVSLGL---KQTTKNPWDEIEQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVH 298

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNK 621
           I E +  K        +++     A +   ++                   +     +  
Sbjct: 299 ITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGA 358

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDD- 679
              G+V  +  +GAF+      DG+VH+S +S  R V   S+V+K+GD V   +LD D  
Sbjct: 359 RVHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPS 418

Query: 680 RGKIKLSMKVVDQNTGKPI 698
           + +I L MK +  +    I
Sbjct: 419 QQRISLGMKQLAVDPWSDI 437


>gi|159186030|ref|NP_356542.2| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58]
 gi|159141164|gb|AAK89327.2| 30S ribosomal protein S1 [Agrobacterium tumefaciens str. C58]
          Length = 566

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 16/196 (8%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSES------RLQLGEFTPRVEIMAIPPDQIRNVIG 568
             +  AL +A   R     E S V  E+      R++   F        +  D     + 
Sbjct: 79  ERIENALGEAVLSREKARREESWVKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAVAFLP 138

Query: 569 MGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVN 620
                IR I + T         ++   D     I  S    +E +R   RS      E  
Sbjct: 139 RSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEG 198

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +
Sbjct: 199 QVVDGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQE 257

Query: 680 RGKIKLSMKVVDQNTG 695
             +I L MK ++ +  
Sbjct: 258 THRISLGMKQLESDPW 273



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 92/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGISAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPSKRRISLGLKQTLENPWQAFAFSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+    V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 271 DPWDGISAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVDVVVLEVDPSKRRISLGLKQTLENPWQ 361


>gi|89896725|ref|YP_520212.1| hypothetical protein DSY3979 [Desulfitobacterium hafniense Y51]
 gi|89336173|dbj|BAE85768.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 721

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  ++DFGAF+      DGLVHISQ+S + +    +V+  GD V V++L  
Sbjct: 640 KTGMILEGTVRNIVDFGAFIDIGVKHDGLVHISQISEKFIKHPMEVLSVGDIVKVRVLGI 699

Query: 678 D-DRGKIKLSMKVV 690
           D  R ++ LSMK +
Sbjct: 700 DTARERVSLSMKEI 713


>gi|220911765|ref|YP_002487074.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
 gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 830

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A   AA           +   + +G V  V  FGAFV     +DG
Sbjct: 629 DILAELDKPGRDPRPAFTTAAFSEGIEKISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDG 688

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           LVH+S L+   V+   +VVK G  V VK+L+ D +R +I L++++ D+   +
Sbjct: 689 LVHVSALANRFVSDPREVVKSGQVVRVKVLEADPERKRISLTLRLDDEPGPR 740


>gi|149926155|ref|ZP_01914417.1| transcription accessory protein, TEX [Limnobacter sp. MED105]
 gi|149824973|gb|EDM84185.1| transcription accessory protein, TEX [Limnobacter sp. MED105]
          Length = 787

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 13/133 (9%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKI 622
           R ++++      +D+   +      L E+E      R                  +    
Sbjct: 600 RDVLKELKPTEFVDERFGLPTVQDILVELEKPGRDPRPSFKTAKFDDKVHTMADLKPGMT 659

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V +FGAFV     +DGLVH+S LS   V     VVK G  V VK+L+ D  R 
Sbjct: 660 LEGVVTNVANFGAFVDIGVHQDGLVHVSALSNTFVKDPHAVVKTGQIVKVKVLEVDIPRK 719

Query: 682 KIKLSMKVVDQNT 694
           +I L+MK+ D   
Sbjct: 720 RISLTMKMGDDVP 732


>gi|160877436|ref|YP_001556752.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS195]
 gi|160862958|gb|ABX51492.1| RNA binding S1 domain protein [Shewanella baltica OS195]
 gi|315269638|gb|ADT96491.1| Tex-like protein protein-like protein [Shewanella baltica OS678]
          Length = 787

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++ 
Sbjct: 654 KPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEV 713

Query: 678 D-DRGKIKLSMK---VVDQN 693
           D +R +I LSM+    +DQ+
Sbjct: 714 DVERRRIGLSMRLDEAIDQS 733


>gi|92114773|ref|YP_574701.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
 gi|91797863|gb|ABE60002.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
          Length = 804

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K       E  AA+      T    E   + +G V  V  FGAFV     +DGLVHIS L
Sbjct: 654 KPGRDPRPEFRAAQFRDGVETLKDLEPGMVLEGSVTNVTHFGAFVDIGVHQDGLVHISAL 713

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           S   +     VVK GD V VK+++ D +R +I LSM++ D
Sbjct: 714 SETFIEDPRQVVKAGDIVKVKVMEVDLERARIGLSMRMGD 753


>gi|304412251|ref|ZP_07393859.1| Tex-like protein [Shewanella baltica OS183]
 gi|307306035|ref|ZP_07585780.1| Tex-like protein [Shewanella baltica BA175]
 gi|304349286|gb|EFM13696.1| Tex-like protein [Shewanella baltica OS183]
 gi|306910908|gb|EFN41335.1| Tex-like protein [Shewanella baltica BA175]
          Length = 787

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++ 
Sbjct: 654 KPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEV 713

Query: 678 D-DRGKIKLSMK---VVDQN 693
           D +R +I LSM+    +DQ+
Sbjct: 714 DVERRRIGLSMRLDEAIDQS 733


>gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
          Length = 224

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 21/218 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R  S ++GLL R  GS+ F++GDT  +  +  G  E  +    L      D ++     
Sbjct: 17  LRRFSCELGLLSRPDGSAAFLQGDTSVLAGL-YGPAE-AKISKELPDRAALDVLL----- 69

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G P   E    +L ++    V+         + +V ++    GS     +
Sbjct: 70  ------RPKVGLPGVLERSREQLLQQTCEAVVLGVLHPRTAISLVLQVLSDAGSLLSCCL 123

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS--GDEDHLGHMDFKVAGTDSG 499
             + +AL+DAG+P+S    G+   L  DG    IL D +   +++    + F +A  D  
Sbjct: 124 NAACMALLDAGLPLSALFCGVTCALQPDG---AILLDPTARQEQEARAVLTFAIASADRK 180

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  +         S   M   L  A+R    I      
Sbjct: 181 VLMVTTKGSC---SVQEMQQCLAAAQRAADTIFQFYRD 215



 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 23/217 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R    E G ++R  DG+     G+T VLA +         K+  D   L V  + +    
Sbjct: 18  RRFSCELGLLSR-PDGSAAFLQGDTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVG-- 74

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
             +PG   R        E L+ +  +  +  +     +    +++ V+  D  S      
Sbjct: 75  --LPGVLERS------REQLLQQTCEAVVLGVLH--PRTAISLVLQVLS-DAGSLLS-CC 122

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQ---GSLDLFVSGTQDAVL 186
           + AA  AL+ +GLP      G       +G  +L+P   ++Q     L   ++     VL
Sbjct: 123 LNAACMALLDAGLPLSALFCGVTCALQPDGAILLDPTARQEQEARAVLTFAIASADRKVL 182

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
           MV  + +  S   +   +         + +      +
Sbjct: 183 MVTTKGS-CSVQEMQQCLAAAQRAADTIFQFYRDSVR 218


>gi|217975273|ref|YP_002360024.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS223]
 gi|217500408|gb|ACK48601.1| RNA binding S1 domain protein [Shewanella baltica OS223]
          Length = 787

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++ 
Sbjct: 654 KPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEV 713

Query: 678 D-DRGKIKLSMK---VVDQN 693
           D +R +I LSM+    +DQ+
Sbjct: 714 DVERRRIGLSMRLDEAIDQS 733


>gi|222094015|ref|YP_002528066.1| transcription accessory protein, s1 RNA-binding domain protein
           [Bacillus cereus Q1]
 gi|229137084|ref|ZP_04265708.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST26]
 gi|221238064|gb|ACM10774.1| probable transcription accessory protein, S1 RNA-binding domain
           protein [Bacillus cereus Q1]
 gi|228646391|gb|EEL02601.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST26]
          Length = 722

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 131/352 (37%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQHVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+                 +  I  +++      +    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKI------PRLGAKTYEQCIGFLRILEGANPLDRTG 563

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +     +     L  L      + + +LQ            +   ++    G+G   +  
Sbjct: 564 IHPEQYKNVELLLKNLGLSKDDVGQPQLQKSLE-------EVEISKLSQETGVGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|158318407|ref|YP_001510915.1| RNA-binding S1 domain-containing protein [Frankia sp. EAN1pec]
 gi|158113812|gb|ABW16009.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
          Length = 901

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 19/154 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           +R ++ + G  +R ++  T           +DD   +   +  LAE+E      R     
Sbjct: 585 VRRILTVTGGDLRALIGDTKTLRSLKPTEFVDDTVGLPTVTDILAELEKPGRDPRPAFRT 644

Query: 617 PEVNK------------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            E  +            I +G V  V  FGAFV     +DGLVH+S +S   V+   +V 
Sbjct: 645 AEFTEGVETLADLVPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVA 704

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K GD V VK+LD D  R +I L++++ D+     
Sbjct: 705 KPGDIVRVKVLDVDIPRKRISLTLRLDDEPGAAD 738


>gi|284050947|ref|ZP_06381157.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
           str. Paraca]
          Length = 718

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            E  P VE +    +   N I      ++ I      K  + D   +      +AE+E  
Sbjct: 565 PESYPVVEQILADVEIPLNAITKTADKLKKI----DLKGYVTDTVGLPTLQDIIAELEKP 620

Query: 607 ----REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
               R   +  T   ++ ++         +G V  V++FGAFV     +DGLVHISQL+ 
Sbjct: 621 GRDPRAEFKYATFRDDIKEVSDLKPGMELEGIVTNVVNFGAFVDVGVHQDGLVHISQLAD 680

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
             V     +V+ G  V VK+L+ +++  +I LSM+
Sbjct: 681 RFVEDPQKIVRVGQVVKVKVLEVNEKLNRISLSMR 715


>gi|239983527|ref|ZP_04706051.1| transcriptional accessory protein [Streptomyces albus J1074]
 gi|291455345|ref|ZP_06594735.1| transcriptional accessory protein [Streptomyces albus J1074]
 gi|291358294|gb|EFE85196.1| transcriptional accessory protein [Streptomyces albus J1074]
          Length = 807

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V VK+++ 
Sbjct: 653 EAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVKDPREVVKPGDIVKVKVMEV 712

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  R +I L++++ D+ 
Sbjct: 713 DAARKRISLTLRLDDEP 729


>gi|154502590|ref|ZP_02039650.1| hypothetical protein RUMGNA_00403 [Ruminococcus gnavus ATCC 29149]
 gi|153796782|gb|EDN79202.1| hypothetical protein RUMGNA_00403 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D  G   + S+     E  R+   +      +  +  G V  + ++GAFV       
Sbjct: 95  IDVDQAGNRLVLSARELLKEKERKEKEAQIASIPIGTVMSGTVETLQNYGAFVKLENGLS 154

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVH+SQ+S +RV   + V+  GD V VK++   D GKI LSMK +
Sbjct: 155 GLVHVSQISQKRVKNPAAVLNVGDEVQVKVIGIKD-GKISLSMKAL 199


>gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 635

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHF 639
              K+   D+   ++  S  A +E  RE  R+      E N    G VVK+M +GAFV  
Sbjct: 433 FQVKIIDLDEHKNRLVLSRKAVLEVEREAKRAEALEHIEENTEMDGTVVKIMPYGAFVDL 492

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  +GL+HIS +S +R+    DV+  GDTV V +  FD +R +I LSMK + +N  
Sbjct: 493 -GGVEGLLHISDISWKRIGAVEDVLSVGDTVHVLVQQFDRERNRISLSMKALQKNPW 548



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            +    +  +   V  + +G+V K+++ GA +       GL+HIS L+ +R A   D+V 
Sbjct: 544 QKNPWIAAIEKFAVGDVVEGEVKKILNIGAILAIDPEIQGLLHISALTEQRGAAVKDLVA 603

Query: 666 EGDTVWVKLLDFD-DRGKIKLS 686
            GD + VK++  D D+ K+ LS
Sbjct: 604 IGDKMQVKIIKIDPDKHKVALS 625



 Score = 44.1 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD- 676
           +   + +G+VV V D  AFV      + ++   +++     K  DVV  GD   V +   
Sbjct: 297 KKGDVVEGKVVSVTDDAAFVSIGTKAEAILPKKEIAVPAPEKAGDVVHVGDEFKVVIAST 356

Query: 677 FDDRGKIKLSM-KVVDQNTGKPI 698
             +   I +S+ K+  +   + +
Sbjct: 357 VKEDSTIVVSLVKMQKEADWEEV 379


>gi|282848928|ref|ZP_06258318.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           parvula ATCC 17745]
 gi|282581433|gb|EFB86826.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
           parvula ATCC 17745]
          Length = 632

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
             + M           ++ A ++ +      ++ +   L  +   L  F P  +      
Sbjct: 355 IYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRGFIPLSQGDVHFV 414

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + N++G          E     + ID+     + S         +  +        V 
Sbjct: 415 KSLDNLVG---------TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVG 465

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + YKG V K+M +GAFV   G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +
Sbjct: 466 ENYKGIVRKIMPYGAFVDI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDAE 524

Query: 680 RGKIKLSMKVVDQNTG 695
             K+ LS+K + ++  
Sbjct: 525 SNKLSLSLKALSKSPW 540



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  V VK++  + D  K+ L++  + ++
Sbjct: 597 GQEVEVKIISLNKDEKKLGLALTELMES 624



 Score = 44.1 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           + +G VV+V D  A+V F    + +++ +++S        DV+K GD +   +++   + 
Sbjct: 293 VVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEIKAVIMNHIKED 352

Query: 681 GKIKLSMKVVDQNT 694
             I LSM  + ++ 
Sbjct: 353 NPIYLSMTRLAKDE 366



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PESAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEAIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|227498498|ref|ZP_03928644.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Acidaminococcus
           sp. D21]
 gi|226903956|gb|EEH89874.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Acidaminococcus
           sp. D21]
          Length = 680

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +  +G +  ++DFG FV       GLVHIS++S +R  K +D+ K GD V V +   D +
Sbjct: 489 ETVEGTIRSIVDFGMFVEIAPFVQGLVHISEISWDRSVKPADLYKVGDKVEVYIKGLDAE 548

Query: 680 RGKIKLSMKVVDQNTGK 696
           +G+I LS+K + ++  +
Sbjct: 549 KGRISLSVKALQEDPWQ 565



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           + G KV +   G           ++A +E   ++      V  I  G V++ + FGA V 
Sbjct: 533 KVGDKVEVYIKGLDAEKGRISLSVKALQEDPWQAAAKNIHVGDIVTGTVLRFLPFGAIVK 592

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                +G++HIS++S +R+ K  DV++ G  V VK+L  D +  KI LS+    ++  K
Sbjct: 593 LNDKNEGMIHISEISEQRIEKPEDVLEVGQEVKVKVLRVDTEHKKIALSITKAKEDAEK 651


>gi|167465524|ref|ZP_02330613.1| 30S ribosomal protein S1 [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 135

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G V ++  FGAFV      +GLVHISQ++   +    +V+KEG  V VK+LD +
Sbjct: 14  IGDIVDGTVKRLASFGAFVEITPGVEGLVHISQIAHRHIGTPQEVLKEGQEVKVKILDIN 73

Query: 679 -DRGKIKLSMKVVDQNT 694
               +I LS+K  ++  
Sbjct: 74  AAEKRISLSIKETEEAP 90


>gi|153002700|ref|YP_001368381.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS185]
 gi|151367318|gb|ABS10318.1| RNA binding S1 domain protein [Shewanella baltica OS185]
          Length = 787

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS L+ + ++    +VK GD V VK+++ 
Sbjct: 654 KPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFISDPHTIVKAGDVVKVKVMEV 713

Query: 678 D-DRGKIKLSMK---VVDQN 693
           D +R +I LSM+    +DQ+
Sbjct: 714 DVERRRIGLSMRLDEAIDQS 733


>gi|50086361|ref|YP_047871.1| hypothetical protein ACIAD3386 [Acinetobacter sp. ADP1]
 gi|49532337|emb|CAG70049.1| conserved hypothetical protein; putative RNA binding protein,
           contains S1 domain [Acinetobacter sp. ADP1]
          Length = 796

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 20/140 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A   +D+   +      LAE+E               RE 
Sbjct: 590 VKDIIGNS-----EIIRQIKADDFVDEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRED 644

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  I  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E V+    VVK G  
Sbjct: 645 ITEIAQLTEGMQL-EGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQI 703

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V+++  D +R ++ LSM+
Sbjct: 704 VQVRVIQVDAERKRVNLSMR 723


>gi|332716826|ref|YP_004444292.1| 30S ribosomal protein S1 [Agrobacterium sp. H13-3]
 gi|325063511|gb|ADY67201.1| 30S ribosomal protein S1 [Agrobacterium sp. H13-3]
          Length = 566

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 16/196 (8%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSES------RLQLGEFTPRVEIMAIPPDQIRNVIG 568
             +  AL +A   R     E S V  E+      R++   F        +  D     + 
Sbjct: 79  ERIENALGEAVLSREKARREESWVKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAVAFLP 138

Query: 569 MGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVN 620
                IR I + T         ++   D     I  S    +E +R   RS      E  
Sbjct: 139 RSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEG 198

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +
Sbjct: 199 QVVDGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQE 257

Query: 680 RGKIKLSMKVVDQNTG 695
             +I L MK ++ +  
Sbjct: 258 THRISLGMKQLESDPW 273



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 92/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGISAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPSKRRISLGLKQTLENPWQAFAFSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I+    V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 271 DPWDGISAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVDVVVLEVDPSKRRISLGLKQTLENPWQ 361


>gi|258592125|emb|CBE68430.1| 30S ribosomal subunit protein S1 [NC10 bacterium 'Dutch sediment']
          Length = 577

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    +     +    +G+V+ + D+GAFV      +GLVHIS++S  +RV   S VV 
Sbjct: 287 KDPWEDVDQRFAIGSRVRGKVISLTDYGAFVELADGIEGLVHISEMSWTQRVKHPSKVVS 346

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            GD++ V +LD D    +I L ++ ++ N    I
Sbjct: 347 VGDSIEVVVLDVDKVNKRISLGLRQIEPNPWLSI 380



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 92/250 (36%), Gaps = 26/250 (10%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           +  +PI +  A      VK GD   +   +   ED  G            I   +   + 
Sbjct: 69  EGAIPIKEFQAPSGELTVKVGDTVDV--YLEQKEDSDGL-----------IVLSREKAEK 115

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
             I  + +  A ++       IL      L+     +  F P  ++   P   +  +IG 
Sbjct: 116 TKI-WDDIRRAYEKGDVINGMILGRTKGGLTVDIG-VRAFLPGSQVDLRPVRDLDKLIGK 173

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
              +           + ++      + S      E  R +        E  KI +G+V  
Sbjct: 174 SFPM---------KVIKLNQRRGNIVLSRRELLEEERRTLKERTLQSLEEGKIIRGKVKN 224

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           + ++GAF+   G  DGL+HI+ +S  RV   S++   GD + V +L FD    ++ L  K
Sbjct: 225 ITEYGAFIDL-GGLDGLLHITDMSWGRVGHPSELFTVGDEIEVVVLKFDRAAERVSLGHK 283

Query: 689 VVDQNTGKPI 698
              ++  + +
Sbjct: 284 QRLKDPWEDV 293



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              SI +   V    +G V  + DFGAFV      DGL+H+S +S  +RV   S+V+K G
Sbjct: 376 PWLSIEESYPVGMRVEGTVRNLTDFGAFVELNDGIDGLIHVSDMSWTKRVRHPSEVLKRG 435

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           D V   +L  D    +I L +K    +  +  V
Sbjct: 436 DKVEAVVLHTDKANRRISLGLKQSQPDPWQSTV 468



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            K +VV++ DFGAFV      +GL+HIS+LS ERVAK  DVV     + +K++  D +  
Sbjct: 478 VKAKVVRLTDFGAFVELEDGVEGLLHISELSHERVAKPEDVVSIDQELSLKIIKLDANER 537

Query: 682 KIKLSMKV 689
           K+ LS++ 
Sbjct: 538 KLGLSLRA 545


>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 265

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 2/155 (1%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E  +     +G+   
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVH-GPAEGRRGDGGSAGSGHA 73

Query: 373 DFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
              +  N    A  +  R  G   R+        R A    L        T+ I   +  
Sbjct: 74  VVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLS 133

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +DGS   A +   +LAL+DAG+P+   + G   G+
Sbjct: 134 ADGSLLAAALNACTLALVDAGIPMPGLLCGCTSGM 168



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD------GQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           S G+   + G T ++ +V      +       G     + V+     +A         RR
Sbjct: 37  SSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHAVVEVDVNVAGFA----GVDRKRR 92

Query: 81  ESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                     I+  +  + +          +   + ++V+  D   S    ++ A + AL
Sbjct: 93  AGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLSADG--SLLAAALNACTLAL 150

Query: 139 MLSGLPFEGPVVGAQVDYINGQYVL-NPRLDE----------DQGSLDLFVSGTQDAVLM 187
           + +G+P  G + G             +PR DE          ++  L      T  AV +
Sbjct: 151 VDAGIPMPGLLCGCTSGMSGSASTPRDPRHDELDPLLDLSLPEEQELPSLTVATTTAVPV 210

Query: 188 VELEANQLSE 197
            E   ++  E
Sbjct: 211 GENNMDEDEE 220


>gi|146296242|ref|YP_001180013.1| RNA-binding S1 domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409818|gb|ABP66822.1| RNA binding S1 domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 141

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G+V  +  FGAFV       GLVHIS+++ E V      +KE  TV VK+LD  + G
Sbjct: 27  VVEGKVKSITKFGAFVELPTGVVGLVHISEIANEYVDDIRKYLKEQQTVKVKVLDIKENG 86

Query: 682 KIKLSMKVVDQ 692
           KI LS+K V++
Sbjct: 87  KISLSIKKVNE 97


>gi|153819867|ref|ZP_01972534.1| 30S ribosomal protein S1 [Vibrio cholerae NCTC 8457]
 gi|126509597|gb|EAZ72191.1| 30S ribosomal protein S1 [Vibrio cholerae NCTC 8457]
          Length = 406

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             V ++  ++ E E++ E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+
Sbjct: 14  NNVVVSRRAVIESESSVERDELLETLQEGTEV-KGIVKNLTDYGAFVDL-GGVDGLLHIT 71

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++ +RV   S++V  GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 72  DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 121



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 125 PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 183

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 184 DIDEERRRISLGLKQCKANPWQ 205



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 289 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 348

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 349 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 381



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 166 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 211

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 212 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 270

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 271 AVDAERERISLGIKQMENDP 290


>gi|294793636|ref|ZP_06758773.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
 gi|294455206|gb|EFG23578.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
          Length = 632

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
             + M           ++ A ++ +      ++ +   L  +   L  F P  +      
Sbjct: 355 IYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRGFIPLSQGDVHFV 414

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + N++G          E     + ID+     + S         +  +        V 
Sbjct: 415 KSLDNLVG---------TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVG 465

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + YKG V K+M +GAFV   G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +
Sbjct: 466 ENYKGIVRKIMPYGAFVDI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDAE 524

Query: 680 RGKIKLSMKVVDQNTG 695
             K+ LS+K + ++  
Sbjct: 525 SNKLSLSLKALSKSPW 540



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  + KG+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVIKGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  V VK++  + D  K+ L++  + ++
Sbjct: 597 GQEVEVKIISLNKDEKKLGLALTELMES 624



 Score = 44.1 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           + +G VV+V D  A+V F    + +++ +++S        DV+K GD +   +++   + 
Sbjct: 293 VVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEIKAVIMNHIKED 352

Query: 681 GKIKLSMKVVDQNT 694
             I LSM  + ++ 
Sbjct: 353 NPIYLSMTRLAKDE 366



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PESAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEAIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|270013243|gb|EFA09691.1| hypothetical protein TcasGA2_TC011820 [Tribolium castaneum]
          Length = 1181

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAK 659
              +     + + P   KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV  
Sbjct: 212 RKIKRESPELDEDPIPGKIYTGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRAEGRVTN 271

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            S+VV  G  V +K+L    + K+ LSMK VDQ TGK +
Sbjct: 272 VSEVVSRGMKVKIKVLSVTGQ-KVSLSMKDVDQITGKDL 309


>gi|219667445|ref|YP_002457880.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219537705|gb|ACL19444.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 721

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  ++DFGAF+      DGLVHISQ+S + +    +V+  GD V V++L  
Sbjct: 640 KTGMILEGTVRNIVDFGAFIDIGVKHDGLVHISQISEKFIKHPMEVLSVGDIVKVRVLGI 699

Query: 678 D-DRGKIKLSMKVV 690
           D  R ++ LSMK +
Sbjct: 700 DTARERVSLSMKEI 713


>gi|291560699|emb|CBL39499.1| Ribosomal protein S1 [butyrate-producing bacterium SSC/2]
          Length = 232

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++ +    + S+   E E  R+   +  +  +V  + +G V  +M +GAFV       
Sbjct: 93  ITVEPEEQRLVLSAKAVEKEKERKERENKINELKVGTVVEGTVENIMPYGAFVDIGDGIS 152

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GLVHISQLS +RV    +VVKEGD V VK++   + GK+ LS+K ++ +
Sbjct: 153 GLVHISQLSQKRVKSPEEVVKEGDAVTVKIIKVAN-GKVSLSIKALEDD 200


>gi|295401354|ref|ZP_06811325.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109686|ref|YP_003988002.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
 gi|294976569|gb|EFG52176.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214787|gb|ADP73391.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 121

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I KG+V  +  +G FV       GLVHIS++S   V    D V  GD + VK+L  
Sbjct: 5   EVGSIVKGKVTGIQPYGVFVELDRETQGLVHISEISHGFVKNIKDYVNVGDEITVKVLSI 64

Query: 678 DDR-GKIKLSMKVVDQ 692
           D    +  LSM+ V++
Sbjct: 65  DPHTKRASLSMRAVEE 80


>gi|269797892|ref|YP_003311792.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
           DSM 2008]
 gi|269094521|gb|ACZ24512.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
           DSM 2008]
          Length = 632

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
             + M           ++ A ++ +      ++ +   L  +   L  F P  +      
Sbjct: 355 IYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRGFIPLSQGDVHFV 414

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + N++G          E     + ID+     + S         +  +        V 
Sbjct: 415 KSLDNLVG---------TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVG 465

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + YKG V K+M +GAFV   G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +
Sbjct: 466 ENYKGIVRKIMPYGAFVDI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDAE 524

Query: 680 RGKIKLSMKVVDQNTG 695
             K+ LS+K + ++  
Sbjct: 525 SNKLSLSLKALSKSPW 540



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  V VK++  + D  K+ L++  + ++
Sbjct: 597 GQEVEVKIISLNKDEKKLGLALTELMES 624



 Score = 44.1 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           + +G VV+V D  A+V F    + +++ +++S        DV+K GD +   +++   + 
Sbjct: 293 VVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEIKAVIMNHIKED 352

Query: 681 GKIKLSMKVVDQNT 694
             I LSM  + ++ 
Sbjct: 353 NPIYLSMTRLAKDE 366



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PESAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEAIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|46249693|gb|AAH68347.1| Zcchc17 protein [Danio rerio]
          Length = 235

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 7/100 (7%)

Query: 606 AREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTS 661
           A E +R    +   P +  I KG+VV V  +GAFV   G  + GLVH S++S  RV   +
Sbjct: 2   AEEHMREPVGLDGLPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPA 61

Query: 662 DVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGKPI 698
           ++V  G+ VW+K++     DD+ K+  SMK V+Q TG+ +
Sbjct: 62  EIVDVGEQVWIKVIGKEMKDDKVKLSFSMKSVNQGTGRDL 101


>gi|88608293|ref|YP_506295.1| ribosomal protein S1 [Neorickettsia sennetsu str. Miyayama]
 gi|88600462|gb|ABD45930.1| ribosomal protein S1 [Neorickettsia sennetsu str. Miyayama]
          Length = 553

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            IL  +          L  F P   +   P      ++G+  K     ++    K+    
Sbjct: 135 VILYTIKSGCIVEVEGLNAFLPNSHLDVRPVSDPATLVGVKLKFRILKMDPKTGKIF--- 191

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-----GARD 644
              V    +  A  EAAR    S         I  G+V  +  +G FV        G  D
Sbjct: 192 ---VSRRKALGAVHEAARSEYISTIKE---GDIIDGRVKSIASYGVFVQIHESDKVGVVD 245

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GL++++ +S  RV   S +   G  V VK++  D ++G+I L +K + +N  K +
Sbjct: 246 GLLYVNDISWARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDV 300



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + ++       +Y G V  V D+G FV      +GLVH  ++S  R  K   +     
Sbjct: 296 PWKDVSKKYTPGNVYPGVVTSVEDYGIFVRLEEGVEGLVHSGEISWTR-EKP--LFLPNS 352

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
            V V LL  D+ G KI LS+K    N  K
Sbjct: 353 KVNVMLLSVDEEGHKIALSVKQCSDNPWK 381


>gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saburreum DSM 3986]
 gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saburreum DSM 3986]
          Length = 368

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +  + V   G KV   I + +G K+ +               ++A  +  R        
Sbjct: 230 VENPKKVFKSGEKVTAFIKDISGEKIALS-----MKFPDQNPWLDAEEKFARGN------ 278

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             + KG+V ++ DFGAFV      D L+H+SQ+S + V K SDV+K GD V   +++F++
Sbjct: 279 --VVKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNE 336

Query: 680 -RGKIKLSMKVVDQNTGK 696
              KI LS+K + Q   +
Sbjct: 337 PEKKISLSIKALTQANEE 354



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  +++ D      + +G V  V DFGAFV   GA DGL+HIS++S  RV     V 
Sbjct: 179 KKEEQKKALFDKITPGDVIEGTVKNVTDFGAFVDLGGA-DGLLHISEMSWGRVENPKKVF 237

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K G+ V   + D     KI LSMK  DQN    
Sbjct: 238 KSGEKVTAFIKDISGE-KIALSMKFPDQNPWLD 269



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G+V+ V +    ++     DG++  S+ S +       VV  G
Sbjct: 8   QMLDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKSDGIITRSEYSNDNNLDLRTVVHVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K+L   D  G++ LS K + Q+ G
Sbjct: 68  DEMEAKVLKINDGEGQVLLSYKKLAQDRG 96


>gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
 gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
          Length = 382

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            K+   D    ++  S  A +E   E   +      +   + +G V ++ DFGAFV+  G
Sbjct: 151 VKIVELDREKNRVILSHKAVVEQELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVNV-G 209

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             DGLVHISQ+S +RV + SDV+ +G +V VK+L  D D  +I LS+K       + +
Sbjct: 210 NVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENV 267



 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +++   +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMK-VVDQN 693
           + G  V VK+L+      +I LS+K  V++N
Sbjct: 319 EMGQEVKVKVLEVHAAEKRISLSIKEAVEEN 349



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V KV +    V+     DG++ IS+L+   + K SDVVK    + +K++  
Sbjct: 16  QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKL 75

Query: 678 DDRGKIKLSMKVVDQN 693
           +D   + LS + VD  
Sbjct: 76  EDDDLV-LSKRAVDAE 90


>gi|283798175|ref|ZP_06347328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
           M62/1]
 gi|291074158|gb|EFE11522.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
           M62/1]
 gi|295091663|emb|CBK77770.1| Ribosomal protein S1 [Clostridium cf. saccharolyticum K10]
          Length = 375

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 14/185 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVE 579
             +    R  +L E    + +   +  E    VE +          I +GG   +  I E
Sbjct: 169 RSRIIGDRRQLLMEKKAAMQKELFERIEVGQTVEGVVKNVTDFGAFIDLGGADGLLHISE 228

Query: 580 QTGAKVNIDDD-----GTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            +  +V           TVK     +   + A            +  +   V  + +G+V
Sbjct: 229 MSWGRVENPKKVFKVGETVKALIKDINGEKIALSLKFPETNPWANAAEKYAVGSVVEGKV 288

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  K++DF++   KI LS
Sbjct: 289 ARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSVGQVIKAKVVDFNEADRKISLS 348

Query: 687 MKVVD 691
           +K ++
Sbjct: 349 IKALE 353



 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +E    M + + +  EV +  +G V  V DFGAF+   GA DGL+HIS++S  RV     
Sbjct: 181 MEKKAAMQKELFERIEVGQTVEGVVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKK 239

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V K G+TV   + D +   KI LS+K  + N  
Sbjct: 240 VFKVGETVKALIKDINGE-KIALSLKFPETNPW 271


>gi|253699853|ref|YP_003021042.1| RNA binding S1 domain protein [Geobacter sp. M21]
 gi|251774703|gb|ACT17284.1| RNA binding S1 domain protein [Geobacter sp. M21]
          Length = 756

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +I D+ E   I +G V  V  FGAFV     +DGLVH+SQL+       +D VK 
Sbjct: 637 REDVVTIADLKEG-MILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V VK+L  D +R +I LS+K  +    +
Sbjct: 696 GQIVKVKVLSADPERKRISLSIKQAEPEKAQ 726


>gi|189241238|ref|XP_972602.2| PREDICTED: similar to CG8241 CG8241-PA [Tribolium castaneum]
          Length = 1247

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAK 659
              +     + + P   KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV  
Sbjct: 278 RKIKRESPELDEDPIPGKIYTGKVANIVPFGCFVQLEGLRRRWEGLVHISQLRAEGRVTN 337

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            S+VV  G  V +K+L    + K+ LSMK VDQ TGK +
Sbjct: 338 VSEVVSRGMKVKIKVLSVTGQ-KVSLSMKDVDQITGKDL 375


>gi|65317521|ref|ZP_00390480.1| COG1098: Predicted RNA binding protein (contains ribosomal protein
           S1 domain) [Bacillus anthracis str. A2012]
          Length = 136

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|325473463|gb|EGC76658.1| tex protein [Treponema denticola F0402]
          Length = 817

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP----- 617
           I +VI    +V   +  +   K NI D     I           RE              
Sbjct: 580 IYDVIHKNEEVSGELRSEIKTKYNIGDQTINDIIEELKKPNRDPREDCPKPIMQQGVLQF 639

Query: 618 ---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V    KG++  V+DFGAFV        L+HIS++S   ++   + VK GD V  K+
Sbjct: 640 EDLKVGMTVKGKIKNVVDFGAFVDLGIKETALLHISEMSDSFISDPLEAVKVGDIVECKI 699

Query: 675 LDFD-DRGKIKLSMKV 689
           +  D DR +I LS K 
Sbjct: 700 ISLDEDRRRISLSRKT 715


>gi|134095742|ref|YP_001100817.1| 30S ribosomal protein S1 [Herminiimonas arsenicoxydans]
 gi|133739645|emb|CAL62696.1| 30S ribosomal subunit protein S1 [Herminiimonas arsenicoxydans]
          Length = 559

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      S   +  A++  +     +  ++   L+    
Sbjct: 65  DFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVIGTVNGKVKGGLTVLTN 124

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK +   V +   K N      V ++  ++ E  
Sbjct: 125 GIRAFLPGSLVDTRP---VKDTTPFEGKTLEFKVIKLDRKRN-----NVVLSRRAVIEAS 176

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 177 MGEERQKLMETLKEG-TVVTGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVL 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  +  K+L +D ++ ++ L +K +  +  
Sbjct: 235 TVGQEITAKVLKYDQEKNRVSLGVKQLGDDPW 266



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G+FV      +GLVH+S++    +    + VV+ GD V V +L+ D +R +
Sbjct: 281 GKVTNLTDYGSFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRR 340

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 341 ISLGMKQCKANPWDD 355



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +  G V  V   GA +      +G +  S++S +RV      +K G
Sbjct: 438 DPFNNFAAMNDKGALVTGTVKSVEPKGAVIQLSEEVEGYLRASEISRDRVEDAGTHLKVG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           DTV   +++ D + + I+LS+K  D
Sbjct: 498 DTVEAMVINVDRKARGIQLSIKAKD 522



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +               +     +G +  + DFG F+   G  D
Sbjct: 332 LEIDEERRRISLGMKQCKAN----PWDDFAVTHKKGDKVRGAIKSITDFGVFIGLAGNID 387

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D +R ++ L +K ++ + 
Sbjct: 388 GLVHLSDLSWTETGE-EAVRRFKKGDELEAIVLAIDVERERVSLGVKQLEGDP 439


>gi|73662579|ref|YP_301360.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|84029459|sp|Q49XT0|RS1_STAS1 RecName: Full=30S ribosomal protein S1
 gi|72495094|dbj|BAE18415.1| 30S ribosomal protein S1 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 393

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+V++  VE+         +  V ++  ++  +E A +    +  + 
Sbjct: 138 ISTDFIEDFSDFEGQVLKLKVEELDPA-----NNRVILSRKAVEALENAEKKDELLESLN 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  G+TV VK+   
Sbjct: 193 EG-DVIEGKVARLTNFGAFVDI-GGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSV 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K    +  + I
Sbjct: 251 DKDSERISLSIKDTLPSPFESI 272



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I E    K+   D  + +I+ S    +        SI        + +G VV++ +FGA
Sbjct: 238 SIGETVNVKIKSVDKDSERISLSIKDTLP---SPFESIKGEFNEGDVIEGTVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV       GLVHIS++S   +   S+ ++ G  V VK+L  D +  +I LS+K    N 
Sbjct: 295 FVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNE 354



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V ++ +    V   GA+ +G++ ISQLST  +   SD VK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKV 63

Query: 667 GDTV-----WVKLLDFDDRGKIKLSMKVVD 691
           GD +      V+  + ++ G   LS + ++
Sbjct: 64  GDEIGAYVTKVEYDEENETGAYILSKRQLE 93


>gi|332283688|ref|YP_004415599.1| transcription accessory protein [Pusillimonas sp. T7-7]
 gi|330427641|gb|AEC18975.1| transcription accessory protein [Pusillimonas sp. T7-7]
          Length = 804

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS LS   V    DVV+ G  V VK+ + D  
Sbjct: 685 MILEGVVTNVANFGAFVDVGVHQDGLVHISALSDTFVKDPRDVVRVGQMVKVKVQEVDAA 744

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L+M++ D   
Sbjct: 745 RKRIGLTMRLNDDAP 759


>gi|313884085|ref|ZP_07817851.1| putative ribosomal protein S1 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620532|gb|EFR31955.1| putative ribosomal protein S1 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 438

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG V ++ DFGAFV      +GLVHISQ+S E +A  +D ++EG  + VK+L  D + 
Sbjct: 298 VLKGTVKRLTDFGAFVEVFPGVEGLVHISQISHEHIATPADKLEEGQEIDVKVLSVDPEE 357

Query: 681 GKIKLSMKVVDQNTGK 696
            ++ LS+K +++   +
Sbjct: 358 HRLSLSIKALEEAPAR 373



 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   +     D     +G   K    IVE     +  +D+  +            
Sbjct: 146 VRGFVPASMVEDYFVDDFSTYVGKELKF--KIVE-----IEPNDNRLILSHKDIARAERE 198

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+   R  T   E   I +G V ++++FGAF+      DGLVHIS+++ E VAK SD + 
Sbjct: 199 AKRAERLQT--LEEGSIIEGTVARIVNFGAFIDL-DGVDGLVHISRIAHEHVAKPSDYLT 255

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G+TV VK+L  D + G++ LS+K         I
Sbjct: 256 PGETVKVKVLSVDLEEGRVSLSIKDTLPGPWDDI 289


>gi|145637928|ref|ZP_01793570.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
 gi|145268868|gb|EDK08829.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
          Length = 770

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVHQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGN 699

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKIKVLEVDVPRKRIALTMR-LDESAVK 727


>gi|329904248|ref|ZP_08273723.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548072|gb|EGF32801.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 781

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + I +G V  V  FGAFV     +DGLVHIS LS   V     VVK G  V VK+L+ D+
Sbjct: 663 DMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKAGQVVRVKVLEVDE 722

Query: 680 -RGKIKLSMKVVDQNT 694
            R +I L+M++ D   
Sbjct: 723 KRKRIALTMRLTDSAP 738


>gi|331696880|ref|YP_004333119.1| Tex-like protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951569|gb|AEA25266.1| Tex-like protein [Pseudonocardia dioxanivorans CB1190]
          Length = 831

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
           I  +IG        +++    K  +DD   +   +  LAE+E      R   R+ T    
Sbjct: 591 IGELIGNT-----RVLKTLQPKRFVDDTVGLPTVTDILAELEKPGRDPRPAFRTATFAEG 645

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V+ I         +G V  V  FGAFV     +DGLVH+S +ST  V+   +VVK GD V
Sbjct: 646 VHTIGDLRPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSTSFVSDPREVVKSGDVV 705

Query: 671 WVKLLDFDD-RGKIKLSMKVVDQN 693
            VK+LD D+ R +I L++++ D+ 
Sbjct: 706 RVKVLDVDEPRKRISLTLRLDDEP 729


>gi|322434828|ref|YP_004217040.1| Tex-like protein protein [Acidobacterium sp. MP5ACTX9]
 gi|321162555|gb|ADW68260.1| Tex-like protein protein [Acidobacterium sp. MP5ACTX9]
          Length = 765

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            + + + +G V  V  FGAFV     +DGLVHIS+LS   +   ++ VK G  V VK++ 
Sbjct: 642 VQPDMVLEGVVTNVTKFGAFVDIGVHQDGLVHISELSNRFLKDPNEAVKVGQIVKVKVIS 701

Query: 677 FD-DRGKIKLSMKVV 690
            D    +I LSMK +
Sbjct: 702 ADMASKRIALSMKAL 716


>gi|294791775|ref|ZP_06756923.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
 gi|294457005|gb|EFG25367.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
          Length = 632

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
             + M           ++ A ++ +      ++ +   L  +   L  F P  +      
Sbjct: 355 IYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRGFIPLSQGDVHFV 414

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + N++G          E     + ID+     + S         +  +        V 
Sbjct: 415 KSLDNLVG---------TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVG 465

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + YKG V K+M +GAFV   G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +
Sbjct: 466 ENYKGIVRKIMPYGAFVDI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDAE 524

Query: 680 RGKIKLSMKVVDQNTG 695
             K+ LS+K + ++  
Sbjct: 525 SNKLSLSLKALSKSPW 540



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  + KG+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVIKGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  V VK++  + D  K+ L++  + ++
Sbjct: 597 GQEVEVKIISLNKDEKKLGLALTELMES 624



 Score = 44.1 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           + +G VV+V D  A+V F    + +++ +++S        DV+K GD +   +++   + 
Sbjct: 293 VVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEIKAVIMNHIKED 352

Query: 681 GKIKLSMKVVDQNT 694
             I LSM  + ++ 
Sbjct: 353 NPIYLSMTRLAKDE 366



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PESAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEAIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|330957181|gb|EGH57441.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 134

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R      ++  I +G V  V +FGAFV     +DGLVHIS LS + +    + VK GD V
Sbjct: 1   RRDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVV 60

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            VK+++ D  R ++ LSM++ D   G+ I
Sbjct: 61  KVKVMEVDIPRKRVGLSMRMSD-TPGEKI 88


>gi|167628523|ref|YP_001679022.1| hypothetical protein HM1_0392 [Heliobacterium modesticaldum Ice1]
 gi|167591263|gb|ABZ83011.1| conserved domain protein [Heliobacterium modesticaldum Ice1]
          Length = 729

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 15/141 (10%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR--EMIRSIT 614
            +   ++    G+G   ++ I+E             +K       ++   R    + S+ 
Sbjct: 600 KVDVAKMAEATGLGVPTLKDIIEAL-----------MKPGRDPREDLPKPRFSSAVLSLD 648

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           ++ E   + +G V  V+DFGAFV      DGLVH+SQL+ + V    +VV  GD V V +
Sbjct: 649 NLKEG-MVLQGTVRNVVDFGAFVDIGIKHDGLVHVSQLADKFVRHPMEVVAVGDIVTVAV 707

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D  R ++ L+M+ V Q +
Sbjct: 708 LSVDRQRERVGLTMRGVPQTS 728


>gi|332254546|ref|XP_003276390.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 2 [Nomascus
           leucogenys]
          Length = 232

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 7/93 (7%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ +    E NK+Y      V D+GAF+   G  + GLVH + +S+ RV K S++V  GD
Sbjct: 1   MKQLVKDTEKNKVYVAM---VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGD 57

Query: 669 TVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
            VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 58  KVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 90


>gi|323699942|ref|ZP_08111854.1| ribosomal protein S1 [Desulfovibrio sp. ND132]
 gi|323459874|gb|EGB15739.1| ribosomal protein S1 [Desulfovibrio desulfuricans ND132]
          Length = 614

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 24/254 (9%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           G  +G +          D+ G E  L   H+D +       +   + D KI  I+     
Sbjct: 120 GEVIGRIVRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALVNQEFDFKILKINRR--- 176

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGI 577
                    R  +L EM        L+  E    V+       +    I +GG   +  I
Sbjct: 177 --RSNVIVSRRVLLEEMRSEQRGKLLETLEEGQVVQGKVKNITEYGVFIDLGGLDGLLHI 234

Query: 578 VEQTGAKV-------NIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIY 623
            + +  ++       ++ DD  +KI +      + +        +   +I +       +
Sbjct: 235 TDMSWKRIKHPKEMVSLGDDLELKILNFDREGQKVSLGLKQLVPDPWENIAEKYPEGSRF 294

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G +  + D+GAFV      +GLVHIS++S  R +   S +VK G+ V V +L  D D+ 
Sbjct: 295 TGVITNLADYGAFVELENGVEGLVHISEMSWTRKLRHPSQMVKVGEEVDVVVLGVDPDKK 354

Query: 682 KIKLSMKVVDQNTG 695
           +I L MK +  N  
Sbjct: 355 RISLGMKQISPNPW 368



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    ++       I+  +    +     +  F P   +   P   +  ++       
Sbjct: 110 DKLEELQEKDGEVIGRIVRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALV------- 162

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               +    K+N      +      L E+ + +      T   E  ++ +G+V  + ++G
Sbjct: 163 NQEFDFKILKINRRRSNVIVSRRVLLEEMRSEQRGKLLET--LEEGQVVQGKVKNITEYG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQN 693
            F+   G  DGL+HI+ +S +R+    ++V  GD + +K+L+FD  G K+ L +K +  +
Sbjct: 221 VFIDL-GGLDGLLHITDMSWKRIKHPKEMVSLGDDLELKILNFDREGQKVSLGLKQLVPD 279

Query: 694 TGKPIV 699
             + I 
Sbjct: 280 PWENIA 285



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +     V +   G V  + DFG FV      +GLVH+S++S +++   S++ KEG
Sbjct: 453 DPWTQVPAKYPVGQKVTGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKIKSPSEMFKEG 512

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVVDQNTGK 696
           DT+  K++    D+R ++ LS+K   +   +
Sbjct: 513 DTIEAKVIHVSADER-RLGLSIKQTKEEPAR 542



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      + +G +  + +FG F+      DGL+H+S +S  +++   S+V K G
Sbjct: 367 PWDVVAEKYPEGTVLEGAIKNITEFGVFIGIEEGIDGLIHVSDISWTKKIRHPSEVYKVG 426

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D+V  K+L  D +  K  L +K + ++  
Sbjct: 427 DSVQAKVLTVDKENEKFTLGVKQLTEDPW 455


>gi|319407960|emb|CBI81614.1| 30S ribosomal protein S1 [Bartonella schoenbuchensis R1]
          Length = 566

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I    E N+I +G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRTVLEESRAEQRSE-IVQNLEENQIVEGVVKNITDYGAFVDL-GGIDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  R+   S+++  G T+ V+++  + D  +I L MK ++ +    I
Sbjct: 228 DMAWRRINHPSEILTMGQTIKVQIIRINQDTHRISLGMKQLENDPWDSI 276



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+ D           E     +   SI+D   V K   G V  + D+G FV      +
Sbjct: 252 IRINQDTHRISLGMKQLEN----DPWDSISDKYPVGKKITGAVTNITDYGGFVEIEPGIE 307

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  ++      ++     V V +L+ D  + +I L +K   +N  
Sbjct: 308 GLIHVSEMSWTKKNIHPGKLLSTSQEVEVVVLEIDASKRRISLGLKQTCENPW 360



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  M   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRINHPSEILTMGQTIKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ ++    + +  P  + +      I +      I  G + +  +
Sbjct: 253 RINQDTHRISLGMKQLENDPWDSISDKYPVGKKITGAVTNITDYGGFVEIEPGIEGLIHV 312

Query: 578 VEQTGAKVNIDDD---GTVKIASSSLAEIEAAREM------------IRSITDVPEVNKI 622
            E +  K NI       T +     + EI+A++                +  +   VN  
Sbjct: 313 SEMSWTKKNIHPGKLLSTSQEVEVVVLEIDASKRRISLGLKQTCENPWVAFANKFPVNSQ 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 IEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIETYNKGDIVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVV 690
            +I L +K +
Sbjct: 433 ERISLGIKQL 442



 Score = 39.1 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            I   +V  + + G  V       +  +  S L+ +R  +  +    G  V   +  FD 
Sbjct: 460 TIVTCEVSGINENGIDVKLIDHNLETTIRRSDLARDRDEQNPERFAIGQKVDACITTFDK 519

Query: 680 RGK-IKLSMKVVDQNTGKPIV 699
           + + + +S+K ++    K  V
Sbjct: 520 KTRKLSVSIKALEIAEEKEAV 540


>gi|312144296|ref|YP_003995742.1| RNA binding S1 domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904947|gb|ADQ15388.1| RNA binding S1 domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 121

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 46/76 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G+V  + +FGAFV       GLVHIS+++   V   S+ +KE D V VK+++ 
Sbjct: 4   EVGSIVDGKVTGITNFGAFVELESGETGLVHISEVANTYVKDISNFLKEDDDVKVKVINI 63

Query: 678 DDRGKIKLSMKVVDQN 693
           DD GKI LS+K ++  
Sbjct: 64  DDDGKIGLSIKQLEDP 79


>gi|219883220|ref|YP_002478382.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
 gi|219867345|gb|ACL47683.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
          Length = 763

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 16/168 (9%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
                R +++  +++ L     Q+ +   R+    +    + + IG     +R I+ +  
Sbjct: 562 AVHPERYNLVETIARDLGVPLAQITQVAERLNNTDLKK-YVTDTIG--EPTLRDILAELE 618

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
                      K      AE   AR            V    +G V  V +FGAFV    
Sbjct: 619 -----------KPGRDPRAEFTFARFRADVKAISDLSVGMQLEGMVTNVANFGAFVDIGV 667

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
            +DGLVH+SQL+   V+    +VK G  V V++L+ D++  +I LSM+
Sbjct: 668 HQDGLVHVSQLADRFVSDPKQIVKVGQVVNVRVLEVDEKLKRISLSMR 715


>gi|323489677|ref|ZP_08094904.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323396808|gb|EGA89627.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 381

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   +    ++  S  A +E  +E  +             KG+V ++  FGAFV   G 
Sbjct: 151 KIVEMEKENNRLILSHRAVVEKEKESQKEQVMDKIHAGDELKGKVQRIASFGAFVDI-GG 209

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            DGLVHISQLS E V K SDVV EG  V VK+L  D D  +I LS+K         I
Sbjct: 210 VDGLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSERISLSIKDTLPGPWDAI 266



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I +      ++ G V +++ +GAFV      +GLVHISQ++ + +A  S+V+ EG+
Sbjct: 262 PWDAIDEKAPKGSVHTGTVKRLVSYGAFVEVLPGVEGLVHISQIAHKHIATPSEVLTEGE 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            V VK+L+ +    ++ LS+K + +  G+
Sbjct: 322 KVEVKILEVNKADKRLSLSIKELQEKQGE 350



 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E         +     KG V K+ +    V   GA  DG++ IS+LS+  + K SD V+ 
Sbjct: 4   ETNMMENRDFQTGDRVKGVVAKIEEKAVTVTIEGAPFDGIIPISELSSLHIEKASDSVEV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           GD + + +   +D   + LS + VD    
Sbjct: 64  GDELELIITKVEDENFV-LSKRKVDAEQA 91


>gi|160941601|ref|ZP_02088932.1| hypothetical protein CLOBOL_06501 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435495|gb|EDP13262.1| hypothetical protein CLOBOL_06501 [Clostridium bolteae ATCC
           BAA-613]
          Length = 715

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-------- 613
           +   + G G   I   ++           G + +   +    + AR+    +        
Sbjct: 574 KPEELSGGGLLGISRKIKDYKRTAQDLGIGEITLRDIAGELEKPARDPRDEMPRPILRSD 633

Query: 614 ---TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  E   + KG V  V+DFGAFV     +DGLVHISQ++ + +    + V  GD V
Sbjct: 634 ILEMKDLEPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDKYIKHPLEAVSVGDIV 693

Query: 671 WVKLLDFD-DRGKIKLSMKVV 690
            VK+L  D  + +I L+MK V
Sbjct: 694 DVKILSVDLAKKRISLTMKGV 714


>gi|34496992|ref|NP_901207.1| transcriptional accessory protein [Chromobacterium violaceum ATCC
           12472]
 gi|34102848|gb|AAQ59212.1| probable transcriptional accessory protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 770

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVHIS LS + +     VVK GD V VK+L+ 
Sbjct: 650 QPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALSNKFIDDPRKVVKAGDVVKVKVLEV 709

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I L+M++ D+
Sbjct: 710 DVARKRIALTMRLDDE 725


>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
 gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
          Length = 283

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 5/157 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E      + S  
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVH-GPHETSG---AGSSA 67

Query: 370 QRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 +  N    A  +  R  G   R+        + A    L  +     T+ +   
Sbjct: 68  TEAVVDVDVNIAGFAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHSTITVQVS 127

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
           +  SDGS   A +   +LAL+DAG+P+   + G   G
Sbjct: 128 VLSSDGSLFAAAINACTLALVDAGIPMPGLLCGCTAG 164



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           S G+   + G T ++ TV                V   +    +    G   +R +  ++
Sbjct: 37  SSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVV--DVDVNIAGFAGVDRKRRAGGSD 94

Query: 87  N-EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                +S  +  + +          +   V ++V+  D   S    ++ A + AL+ +G+
Sbjct: 95  RQSTQLSTALKSAFQSHLHTSLYPHSTITVQVSVLSSDG--SLFAAAINACTLALVDAGI 152

Query: 144 PFEGPVVGAQVD 155
           P  G + G    
Sbjct: 153 PMPGLLCGCTAG 164


>gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1 [Janthinobacterium sp. Marseille]
 gi|151280774|gb|ABR89184.1| small subunit ribosomal protein S1 [Janthinobacterium sp.
           Marseille]
          Length = 571

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++     GK +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 148 VDTRPVKDTTPFEGKTLEFKVIKLDRKRN-----NVVLSRRAVIEASMGEERQKLMETLK 202

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+  G  +  K+L +
Sbjct: 203 EG-TIVTGVVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVLTVGQEITAKVLKY 260

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 261 DQEKNRVSLGVKQLGDDPW 279



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G+FV      +GLVH+S++    +    + VV+ GD V V +L+ D +R +
Sbjct: 294 GKVTNLTDYGSFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRR 353

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 354 ISLGMKQCKANPWDD 368



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +  G V  V   GA +      +G +  S++S +RV      +K G
Sbjct: 451 DPFNNFAAMNDKGALVTGTVKSVEPKGAVIQLSDEVEGYLRASEISRDRVEDAGTHLKVG 510

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           DTV   +++ D + + I+LS+K  D
Sbjct: 511 DTVEAMVINVDRKARGIQLSIKAKD 535



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +               +     +G +  + DFG F+   G  D
Sbjct: 345 LEIDEERRRISLGMKQCKAN----PWDDFAVTHKKGDKVRGAIKSITDFGVFIGLAGNID 400

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D +R ++ L +K ++ + 
Sbjct: 401 GLVHLSDLSWTETGE-EAVRRFKKGDELEAIVLAIDVERERVSLGVKQLEGDP 452


>gi|238927157|ref|ZP_04658917.1| S1 family RNA-binding protein [Selenomonas flueggei ATCC 43531]
 gi|238884939|gb|EEQ48577.1| S1 family RNA-binding protein [Selenomonas flueggei ATCC 43531]
          Length = 154

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 39/67 (58%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + +FGAFV     + GL+HIS+++   V    D +KE D V VK+L  D+RGKI LS+
Sbjct: 20  TGITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLKEHDKVKVKVLTVDERGKIGLSI 79

Query: 688 KVVDQNT 694
           K +    
Sbjct: 80  KALQDKP 86


>gi|167766775|ref|ZP_02438828.1| hypothetical protein CLOSS21_01283 [Clostridium sp. SS2/1]
 gi|317499056|ref|ZP_07957337.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711529|gb|EDS22108.1| hypothetical protein CLOSS21_01283 [Clostridium sp. SS2/1]
 gi|316893706|gb|EFV15907.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 235

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++ +    + S+   E E  R+   +  +  +V  + +G V  +M +GAFV       
Sbjct: 96  ITVEPEEQRLVLSAKAVEKEKERKERENKINELKVGTVVEGTVENIMPYGAFVDIGDGIS 155

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           GLVHISQLS +RV    +VVKEGD V VK++   + GK+ LS+K ++ +
Sbjct: 156 GLVHISQLSQKRVKSPEEVVKEGDAVTVKIIKVAN-GKVSLSIKALEDD 203


>gi|291571476|dbj|BAI93748.1| probable transcription accessory protein [Arthrospira platensis
           NIES-39]
          Length = 718

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            E  P VE +    +   N I      ++ I      K  + D   +      +AE+E  
Sbjct: 565 PESYPVVEQILADVEIPLNAITKTADKLKKI----DLKGYVTDTVGLPTLKDIIAELEKP 620

Query: 607 ----REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
               R   +  T   ++ ++         +G V  V++FGAFV     +DGLVHIS+L+ 
Sbjct: 621 GRDPRAEFKYATFRDDIKEVSDLKPGMELEGIVTNVVNFGAFVDVGVHQDGLVHISELAD 680

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
             V     +V+ G  V VK+L+ +++  +I LSM+
Sbjct: 681 RFVEDPQKIVRVGQVVKVKVLEVNEKLNRISLSMR 715


>gi|94501660|ref|ZP_01308176.1| S1 RNA binding domain protein [Oceanobacter sp. RED65]
 gi|94426236|gb|EAT11228.1| S1 RNA binding domain protein [Oceanobacter sp. RED65]
          Length = 776

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +            + A  +         + + I +G V  V  FGAFV     +DG
Sbjct: 616 DILSELEKPGRDPRPEFVTAEFKEGVEEIKDLKDDMILEGVVSNVAAFGAFVDVGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           LVHIS +S + +     VVK GD V VK+++ D  R +I LSM++ D
Sbjct: 676 LVHISMMSDQFIDDPRQVVKAGDVVKVKVMEVDVPRKRIALSMRMSD 722


>gi|298242788|ref|ZP_06966595.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297555842|gb|EFH89706.1| RNA binding S1 domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 507

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S  +A  E  +     + +  +  ++ KG V  + +FGAFV   GA D
Sbjct: 220 IEINRARNRLILSERMAVQEWRQRRREELLEELKPGEVRKGVVSNLANFGAFVDLGGA-D 278

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVHISQL+  RV   S+V+  G  V V++L  D +R KI LS+K  + +  
Sbjct: 279 GLVHISQLAWSRVNHPSEVLHVGQEVEVQVLSVDKERKKIALSIKRAEVDPW 330



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            A  +   ++       ++  G V K+  FGAF       +GL+H S+L+         +
Sbjct: 324 RAEVDPWTTVEQRYTPGQLVNGTVTKIAPFGAFARIEDGIEGLIHHSELAPG--TDPKSI 381

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           ++EG  + +++L  D +R ++ LS++ VD+
Sbjct: 382 LQEGAQLQLRILRIDPERRRLGLSLRQVDE 411


>gi|291542882|emb|CBL15992.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Ruminococcus bromii L2-63]
          Length = 163

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+V  +  FGAFV    ++ G+VHIS+++   + + SD VK G  V VK+L  
Sbjct: 4   EVGMILEGKVSGITKFGAFVDLPDSKTGMVHISEVAPTFINEISDYVKVGQEVKVKVLAL 63

Query: 678 DDRGKIKLSMKV 689
           +D GKI LSMK 
Sbjct: 64  ND-GKISLSMKQ 74


>gi|300023832|ref|YP_003756443.1| ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525653|gb|ADJ24122.1| ribosomal protein S1 [Hyphomicrobium denitrificans ATCC 51888]
          Length = 572

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 446 LALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           +A++D G+ +   VA    G+     D  +             +  +      G   +  
Sbjct: 46  MAIIDVGLKMEGRVAMKEFGIGGKPGDLKV--------GDTVEVYLERVENALGEAVLSR 97

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
           D      S   +    ++ ++    I N++    +        F P  ++   P   I  
Sbjct: 98  DKARREESWTRLERLYEKGEKVTGVIFNKVKGGFTVDLDGAVAFLPGSQVDIRPVRDIGP 157

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           ++          +++          G + ++  S+ E   A +    +  + E  +I  G
Sbjct: 158 LMHQQQPFQILKMDRRR--------GNIVVSRRSVLEESRAEQRTEIVARLAEG-QIIDG 208

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAF+   G  DGL+H++ ++  RV   S+++  GDTV V+++  + +  +I 
Sbjct: 209 LVKNITDYGAFIDL-GGIDGLLHVTDMAWRRVNHPSEILNVGDTVKVQIIRINPETQRIS 267

Query: 685 LSMKVVDQNTGKPI 698
           L MK +  +    I
Sbjct: 268 LGMKQLQSDPWSSI 281



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI     V    KG V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 276 DPWSSIEAKYPVGARVKGTVTNIADYGAFVELEPGVEGLIHVSEMSWTKKNTHPGKIVST 335

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
              V V++L+ D +  +I L +K   +N  
Sbjct: 336 SQQVEVQVLEVDPQKRRISLGLKQTQENPW 365



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 91/256 (35%), Gaps = 36/256 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           GLVK+  D+    D+ G +   H+  M ++     S I  +           + + + + 
Sbjct: 208 GLVKNITDYGAFIDLGGIDGLLHVTDMAWRRVNHPSEILNVG----------DTVKVQII 257

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +       I   M ++ S+    +    P    +      I +      +  G + +  +
Sbjct: 258 RINPETQRISLGMKQLQSDPWSSIEAKYPVGARVKGTVTNIADYGAFVELEPGVEGLIHV 317

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK---------------I 622
            E +  K N      V  +     ++       R I+   +  +               I
Sbjct: 318 SEMSWTKKNTHPGKIVSTSQQVEVQVLEVDPQKRRISLGLKQTQENPWDGFLTAHPKGSI 377

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK--TSDVVKEGDTVWVKLLDFDD- 679
            +G +  + +FG F+      DG+VH+S L  ++       D  K+GD V   +LD D  
Sbjct: 378 VEGPIRNITEFGLFIGLDNGIDGMVHLSDLDWQKAGDEVIKDY-KKGDNVKAIVLDVDGA 436

Query: 680 RGKIKLSMKVVDQNTG 695
           + +I L +K +  +  
Sbjct: 437 KERISLGIKQLAGDPA 452



 Score = 38.4 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
               V  V + G  V    +     V    LS +R  +  +    GD V   ++  D   
Sbjct: 464 VTCTVTSVSEAGIEVKIADSELTSFVKRGDLSRDRSEQRPERFNVGDKVDAAVISVDKAA 523

Query: 681 GKIKLSMKVVD 691
            +I +S+K ++
Sbjct: 524 RRIAVSVKALE 534


>gi|116249872|ref|YP_765710.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. viciae 3841]
 gi|241207043|ref|YP_002978139.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115254520|emb|CAK05594.1| putative 30S ribosomal protein S1 [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|240860933|gb|ACS58600.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 567

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 16/196 (8%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSES------RLQLGEFTPRVEIMAIPPDQIRNVIG 568
             +  AL +A   R     E S V  E+      R++   F        +  D     + 
Sbjct: 79  ERIENALGEAVLSREKARREESWVKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAIAFLP 138

Query: 569 MGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVN 620
                IR I + T         ++   D     I  S    +E +R   RS      E  
Sbjct: 139 RSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEG 198

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +
Sbjct: 199 QVVDGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQE 257

Query: 680 RGKIKLSMKVVDQNTG 695
             +I L MK ++ +  
Sbjct: 258 THRISLGMKQLESDPW 273



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIQAKYPEGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                       +          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVEVVVLEVDPSKRRISLGLKQTLENPWAAFARSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G V  + D+GAFV      +GL+HIS++S  ++      ++     V V +L
Sbjct: 281 PEGKKI-SGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVEVVVL 339

Query: 676 DFDD-RGKIKLSMKVVDQNTG 695
           + D  + +I L +K   +N  
Sbjct: 340 EVDPSKRRISLGLKQTLENPW 360



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + L+ +R  +  +    G     ++ +F  
Sbjct: 461 VVSCEVIAVNDGGVEVKLVNHEDITSFIRRADLARDRDEQRPERFSVGQVFDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI LS+K ++    K  V
Sbjct: 521 KDRKIMLSIKALEIAEEKEAV 541


>gi|225023880|ref|ZP_03713072.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
           23834]
 gi|224943354|gb|EEG24563.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
           23834]
          Length = 167

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 16/153 (10%)

Query: 392 GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM-- 449
           G  S R     RL  R++   +  +      + I  ++ ++DG +  A++ G+ +AL   
Sbjct: 8   GKQSGRTQEIQRLIGRSLRAAVDLSQLGERQILIDCDVIQADGGTRTASITGAYVALHLA 67

Query: 450 ---------DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG- 499
                     A  PI + VA +++G+V      + L D+   ED     D  +  T SG 
Sbjct: 68  IGKLLAAGKLAHNPIREAVAAVSLGIV----GGVPLLDLDYPEDSGCDSDINLVMTASGN 123

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           I  +Q   +    S   +   L   ++G + +L
Sbjct: 124 IIEIQGTAEGDAFSPAALTQLLALGQKGIVELL 156



 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 24/159 (15%)

Query: 78  LRRE---SRPTENEILISRMIDRSIRPLFSKCYKNETQVI--INVMQHDLESSPHVVSMV 132
           +RRE    + +     I R+I RS+R         E Q++   +V+Q D        S+ 
Sbjct: 1   MRREAAQGKQSGRTQEIQRLIGRSLRAAVDLSQLGERQILIDCDVIQADGG--TRTASIT 58

Query: 133 AASAALM-----------LSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFV 178
            A  AL            L+  P    V    +  + G  +L+    ED      ++L +
Sbjct: 59  GAYVALHLAIGKLLAAGKLAHNPIREAVAAVSLGIVGGVPLLDLDYPEDSGCDSDINLVM 118

Query: 179 SGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPVI 215
           + + + ++ ++   E +  S   +   +  G      ++
Sbjct: 119 TASGN-IIEIQGTAEGDAFSPAALTQLLALGQKGIVELL 156


>gi|319775511|ref|YP_004137999.1| transcriptional accessory protein [Haemophilus influenzae F3047]
 gi|317450102|emb|CBY86316.1| predicted transcriptional accessory protein [Haemophilus influenzae
           F3047]
          Length = 770

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIY 623
            +V Q  AK  ID+   +        E+E      R                  +   I 
Sbjct: 595 SVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKPGMIL 654

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R +
Sbjct: 655 EGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVSRKR 714

Query: 683 IKLSMKVVDQNTGK 696
           I L+M+ +D++  K
Sbjct: 715 IALTMR-LDESAVK 727


>gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira
           defluvii]
 gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira
           defluvii]
          Length = 799

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+     + +G V  V  FGAFV     +DGLVH+S L+ + V    +VVK 
Sbjct: 664 RDGVESLADLQPG-MVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALANKFVKDPHEVVKP 722

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           G  V VK+L  D  R +I L+M++ D  T
Sbjct: 723 GQIVKVKVLAVDVPRQRISLTMRMEDAAT 751


>gi|209551601|ref|YP_002283518.1| 30S ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537357|gb|ACI57292.1| ribosomal protein S1 [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 567

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 16/196 (8%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSES------RLQLGEFTPRVEIMAIPPDQIRNVIG 568
             +  AL +A   R     E S V  E+      R++   F        +  D     + 
Sbjct: 79  ERIENALGEAVLSREKARREESWVKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAIAFLP 138

Query: 569 MGGKVIRGIVEQTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVN 620
                IR I + T         ++   D     I  S    +E +R   RS      E  
Sbjct: 139 RSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEG 198

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  + D+GAFV   G  DGL+H++ ++  RV   S+++  G  V V+++  + +
Sbjct: 199 QVVDGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQE 257

Query: 680 RGKIKLSMKVVDQNTG 695
             +I L MK ++ +  
Sbjct: 258 THRISLGMKQLESDPW 273



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIQAKYPEGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                       +          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVEVVVLEVDPSKRRISLGLKQTLENPWAAFARSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D ++
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVDVEK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGKDA 446



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  KI  G V  + D+GAFV      +GL+HIS++S  ++      ++     V V +L
Sbjct: 281 PEGKKI-SGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVEVVVL 339

Query: 676 DFDD-RGKIKLSMKVVDQNTG 695
           + D  + +I L +K   +N  
Sbjct: 340 EVDPSKRRISLGLKQTLENPW 360



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + L+ +R  +  +    G     ++ +F  
Sbjct: 461 VVSCEVIAVNDGGVEVKLVNHEDITSFIRRADLARDRDEQRPERFSVGQVFDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI LS+K ++    K  V
Sbjct: 521 KDRKIMLSIKALEIAEEKEAV 541


>gi|29568412|gb|AAO83393.1| Ldc4 [Danio rerio]
          Length = 230

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 4/87 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +P +  I KG+VV V  +GAFV   G  + GLVH S++S  RV   +++V  G+ VW+K+
Sbjct: 10  LPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKV 69

Query: 675 LD---FDDRGKIKLSMKVVDQNTGKPI 698
           +     DD+ K+  SMK V+Q TG+ +
Sbjct: 70  IGKEMKDDKVKLSFSMKSVNQGTGRDL 96


>gi|329906685|ref|ZP_08274481.1| SSU ribosomal protein S1p [Oxalobacteraceae bacterium IMCC9480]
 gi|327547180|gb|EGF32041.1| SSU ribosomal protein S1p [Oxalobacteraceae bacterium IMCC9480]
          Length = 560

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      S   +  A++  +     +  ++   L+    
Sbjct: 65  DFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVIGTVNGKVKGGLTVLTN 124

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK +   V +   K N      V ++  ++ E  
Sbjct: 125 GIRAFLPGSLVDTRP---VKDTTPFEGKTLEFKVIKLDRKRN-----NVVLSRRAVIEAS 176

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   +  G V  + D+GAFV   G  DGL+HI+ L+  RV   S+V+
Sbjct: 177 MGEERQKLMETLKEG-TVVTGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVRHPSEVL 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  +  K+L +D ++ ++ L +K +  +  
Sbjct: 235 TVGQEITAKVLKYDQEKNRVSLGVKQLGDDPW 266



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VV+ GD V V +L+ D +R +
Sbjct: 281 GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRR 340

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 341 ISLGMKQCKANPWDD 355



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +  G V  V   GA +      +G +  S++S +RV      +K G
Sbjct: 438 DPFNNFAAMNDKGSLVTGVVKMVEPKGAVIQLSEEVEGYLRASEISRDRVEDAGTHLKVG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           DTV   +L+ D + + I+LS+K  D
Sbjct: 498 DTVEAMVLNIDRKARGIQLSIKAKD 522



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +               +     +G +  + DFG F+   G  D
Sbjct: 332 LEIDEERRRISLGMKQCKAN----PWDDFAVTHKKGDKVRGAIKSITDFGVFIGLAGNID 387

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +   V   K+GD +   +L  D +R ++ L +K ++ + 
Sbjct: 388 GLVHLSDLSWTETGE-EAVRRFKKGDELEAIVLAIDVERERVSLGVKQLEGDP 439


>gi|329122447|ref|ZP_08251034.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
 gi|327473729|gb|EGF19148.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
          Length = 773

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIY 623
            +V Q  AK  ID+   +        E+E      R                  +   I 
Sbjct: 598 SVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKPGMIL 657

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R +
Sbjct: 658 EGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVSRKR 717

Query: 683 IKLSMKVVDQNTGK 696
           I L+M+ +D++  K
Sbjct: 718 IALTMR-LDESAVK 730


>gi|320537739|ref|ZP_08037664.1| ribosomal protein S1 [Treponema phagedenis F0421]
 gi|320145418|gb|EFW37109.1| ribosomal protein S1 [Treponema phagedenis F0421]
          Length = 803

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +  +VN I KG+V K+ DFGAF+      +GL HIS+ S  +++ K SD+VK 
Sbjct: 507 DPWLEFENKFQVNDIVKGRVTKITDFGAFIELSEGIEGLAHISEFSWVKKINKPSDMVKS 566

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L +D   G++ L +K V  N    I
Sbjct: 567 GDEVECMILGYDIQAGRVSLGLKQVTANPWDDI 599



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +  +   D   +++G+ GK     +         +D+  V          E 
Sbjct: 364 IIAFLPISQADSQKVDNPESLVGVSGKFYIERISPNRQNRE-NDNIVVNRRKYLEEVTEK 422

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+     T+   +  + +G+V     FGAF+   G  DGL+H++ +S   V +  D VK
Sbjct: 423 TRDEFFQNTN---IGDVVEGRVKSFTSFGAFIDLGGF-DGLLHVNDMSWGHVMRPKDFVK 478

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           +G+ + + ++  D    +I LS+K    +  
Sbjct: 479 KGEKIKLMVIRLDMAEKRINLSLKHFTPDPW 509



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 71/204 (34%), Gaps = 22/204 (10%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGM 569
             + + + +       I   +     +  L+        +I+     +I +      +  
Sbjct: 481 EKIKLMVIRLDMAEKRINLSLKHFTPDPWLEFENKFQVNDIVKGRVTKITDFGAFIELSE 540

Query: 570 GGKVIRGIVEQTG-AKVNIDDD----GTVKIASSSLAEIEAAR----------EMIRSIT 614
           G + +  I E +   K+N   D    G          +I+A R               I 
Sbjct: 541 GIEGLAHISEFSWVKKINKPSDMVKSGDEVECMILGYDIQAGRVSLGLKQVTANPWDDID 600

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVK 673
               V      +VVK+ + GAFV      DG +H   +S  +++      ++ G  +   
Sbjct: 601 TRYPVGTRLTRKVVKITNAGAFVELEEGIDGFLHSDDISWTKKIRHLGSELEVGQEIDCM 660

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGK 696
           +++   +  +I+L +K + ++  +
Sbjct: 661 VIECTPETHRIRLGIKQLTEDPWE 684



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV--- 664
           +   +  +  ++    +G+V  + DFG FV   G  +GL+H   L   R A   + +   
Sbjct: 681 DPWETFANAYKIGSFVEGEVTSITDFGIFVKVPGDIEGLIHKQNLVEGRDANPDEALQKY 740

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMKV 689
           + GD V   ++D + R  K   S++ 
Sbjct: 741 QVGDKVKAVVIDINPREKKTAFSIRD 766



 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 16/171 (9%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +  ++   A ++  +G   +  E      E R Q+ +   +   + I  D     +    
Sbjct: 152 LDASVEARAKRRFNQGTSKLSLEEITANIEERDQIDKNK-KEGSLKIAKD--AAYLDTSR 208

Query: 572 KVIRGIVEQTGAKVN-----IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
             I+ + E    K++     ++D    K A  +  E   A+   +   + P+   + +G 
Sbjct: 209 LTIKEVCEIIKNKIHSKGLRMEDMEVEKNAVKNSQEGIQAQLQEQYSFEAPQPGTVKEGI 268

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +++V D   FV   G  +G V +++  T          K+GD V V +   
Sbjct: 269 IIQVTDDTVFVDVGGKSEGHVPLTEFETAP--------KKGDAVRVYIEKI 311


>gi|71064708|ref|YP_263435.1| hypothetical protein Psyc_0127 [Psychrobacter arcticus 273-4]
 gi|71037693|gb|AAZ18001.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 840

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I D+              A      +         I +G V  V  FG F+     +DGL
Sbjct: 651 ILDELAKPARDPRPEFKTANFRDDVNSIKDLSEGMILEGVVTNVTAFGCFIDVGVHQDGL 710

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           VHISQ++ + VA   + VK GD V V+++  D+ RG+I  SMK   +   +P
Sbjct: 711 VHISQMANDFVADPMNRVKPGDIVSVRVISIDEKRGRIGFSMKPEAEKPARP 762


>gi|313893418|ref|ZP_07826990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442059|gb|EFR60479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 632

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
             + M           ++ A ++ +      ++ +   L  +   L  F P  +      
Sbjct: 355 IYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRGFIPLSQGDVHFV 414

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + N++G          E     + ID+     + S         +  +        V 
Sbjct: 415 KSLDNLVG---------TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVG 465

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           + YKG V K+M +GAFV   G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +
Sbjct: 466 ENYKGIVRKIMPYGAFVDI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDAE 524

Query: 680 RGKIKLSMKVVDQNTG 695
             K+ LS+K + ++  
Sbjct: 525 SNKLSLSLKALSKSPW 540



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           G  V VK++  + D  K+ L++
Sbjct: 597 GQEVEVKIISLNKDEKKLGLAL 618



 Score = 43.7 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           + +G VV+V D  A+V F    + +++ +++S        DV+K GD +   +++   + 
Sbjct: 293 VVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEIKAVIMNHIKED 352

Query: 681 GKIKLSMKVVDQNT 694
             I LSM  + ++ 
Sbjct: 353 NPIYLSMTRLAKDE 366



 Score = 39.5 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PESAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEAIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|229084599|ref|ZP_04216869.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
 gi|228698749|gb|EEL51464.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
          Length = 382

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCG 641
            K+   D    ++  S  A +E   E  +       +   + +G V ++ DFGAFV+  G
Sbjct: 151 VKIVELDREKNRVILSHKAVVEQELESKKKDAISSLKEGDVVEGTVQRLTDFGAFVNV-G 209

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             DGLVHISQ+S +RV + +DV+ +G +V VK+L  D D  +I LS+K       + + 
Sbjct: 210 GVDGLVHISQISHDRVEQPADVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENVA 268



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      ++    +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVAAEVKPGDIREGLVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGK 696
           + G  V VK+L+      +I LS+K   +   +
Sbjct: 319 EMGQEVKVKVLEVHAAEKRISLSIKEAIEENNE 351



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V KV +    V+     DG++ IS+L+   + K SDVV    T+ +K++  
Sbjct: 16  QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVGLDQTLELKVIKL 75

Query: 678 DDRGKIKLSMKVVDQN 693
           +D   + LS + VD  
Sbjct: 76  EDDDLV-LSKRAVDAE 90


>gi|291562264|emb|CBL41080.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4]
          Length = 298

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           + + ++    GK I   V      +  D++    + S   A  E  +E         EV 
Sbjct: 142 EYVEDLKEFDGKTIEVTV------ITADEETHRLVLSGREAAREKKQEETNKKIAKCEVG 195

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + KG V  + D+GAFV       GL+HISQ+ST+R+     V+KEG  V VK++   + 
Sbjct: 196 AVMKGTVETLKDYGAFVELENGLTGLLHISQISTKRIKHPGAVLKEGQEVRVKIISTAN- 254

Query: 681 GKIKLSMK 688
            KI LSMK
Sbjct: 255 NKISLSMK 262



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           +  ++  +E + +      V  +  G V+ V D    V      DG++    LS +    
Sbjct: 1   MESMDDYKEELEASLKKIRVGDVVTGTVIDVTDDAVIVDLKAYADGVIRKDDLSEDPDFN 60

Query: 660 TSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQ 692
            ++++  GD +   ++   D  G + LS K  +Q
Sbjct: 61  MAEMIHPGDEITATVMATNDGEGNMVLSKKEANQ 94


>gi|269126870|ref|YP_003300240.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
           DSM 43183]
 gi|268311828|gb|ACY98202.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 795

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIEAAREMIR----- 611
           +R ++   G  IR ++  T    +      +DD   +   +  LAE+E      R     
Sbjct: 588 VRRILDATGTDIRSLIGNTKVLRSLKPADFVDDTFGLPTVTDILAELEKPGRDPRPAFKT 647

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                     +  +   + +G V  V  FGAFV     +DGLVHIS +S   V+   +VV
Sbjct: 648 AAFADGVETLEDLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISAMSKNYVSDPREVV 707

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           K GD V V++LD D  R +I L++++ D   
Sbjct: 708 KPGDIVKVRVLDVDIPRKRISLTLRLDDDPA 738


>gi|291614518|ref|YP_003524675.1| ribosomal protein S1 [Sideroxydans lithotrophicus ES-1]
 gi|291584630|gb|ADE12288.1| ribosomal protein S1 [Sideroxydans lithotrophicus ES-1]
          Length = 568

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A+++ +    ++  ++   L+     +  F P   +   P   +++      K +  
Sbjct: 103 LEQAMEEGRIVEGYVSGKVKGGLTAMVNGIRAFLPGSLVDTRP---VKDTTPYENKTMEL 159

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     +    + ++ E   I KG V  + D+GAF
Sbjct: 160 KVIKLDRKRN-----NVVVSRRAVLEASQGADRESLLENLKEGA-IVKGIVKNITDYGAF 213

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ L+  RV   S+V+  GD V  K+L FD ++ ++ L +K +  +  
Sbjct: 214 VDL-GGIDGLLHITDLAWRRVKHPSEVLTVGDEVEAKILKFDQEKNRVSLGIKQMGDDPW 272



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +    S VV  
Sbjct: 270 DPWNGLARRYPQGTRLFGKVTNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVAL 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N    
Sbjct: 330 GDEVEVMILEIDEQRRRISLGMKQCKSNPWDD 361



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V  +   GA +   G  +  +  S++S +RV    + +KEGDTV   +++ D + 
Sbjct: 458 VVTGVVKSLDAKGAVIGLDGDVEAYLKASEVSADRVEDIRNHLKEGDTVKAVIINVDRKN 517

Query: 682 K-IKLSMKVVDQ 692
           + I LS+K +D+
Sbjct: 518 RGINLSIKALDK 529



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---K 665
                    +     KG +  + DFG F+   G  DGLVH+S LS        + V   K
Sbjct: 358 PWDDFALNHKKGDKVKGAIKSITDFGVFIGLDGGIDGLVHLSDLSWSIPG--EEAVRNYK 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD +   +L  D +R +I L +K ++ + 
Sbjct: 416 KGDELEALVLAIDVERERISLGVKQLEGDP 445


>gi|239815851|ref|YP_002944761.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
 gi|239802428|gb|ACS19495.1| RNA binding S1 domain protein [Variovorax paradoxus S110]
          Length = 791

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAF+     +DGLVH+SQLS + V    +VVK GD V VK+++ D  
Sbjct: 672 MILEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVMEVDVA 731

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LSMK +D    +
Sbjct: 732 RKRIGLSMK-LDAAPAR 747


>gi|254419951|ref|ZP_05033675.1| ribosomal protein S1 [Brevundimonas sp. BAL3]
 gi|196186128|gb|EDX81104.1| ribosomal protein S1 [Brevundimonas sp. BAL3]
          Length = 567

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAILEEARAEQRTELVGQLQEG-EVREGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV+  S V+  GDTV V+++  + D  +I L MK +  +  
Sbjct: 229 DMSWKRVSHPSQVLAVGDTVKVQIVKINPDTQRISLGMKQLQSDPW 274



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A      +      +    +G+V    +FG F+      DG+VH+S L    V+    +
Sbjct: 355 QAQDNPWDAFVANNPIGSTVEGEVKNATEFGLFIGLDNDIDGMVHLSDLDWS-VSGEEAI 413

Query: 664 --VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              ++G+ V  K+LD D ++ ++ L +K +  + 
Sbjct: 414 QRYRKGEMVKAKVLDVDVEKERVSLGIKQLGGDP 447



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   Y G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 272 DPWDGVEAKYPVGAKYTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 331

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              V V +LD D  + +I L +K    N  
Sbjct: 332 SQEVDVVVLDVDASKRRISLGLKQAQDNPW 361



 Score = 39.1 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           F          V  S LS +R  +  +    GD V   +   D    ++ +S+K ++
Sbjct: 476 FGEDDAPVTAFVRKSDLSRDRNEQRPERFAVGDRVDAMITAVDKASRRVSVSIKALE 532


>gi|52078558|ref|YP_077349.1| hypothetical protein BL00507 [Bacillus licheniformis ATCC 14580]
 gi|52783920|ref|YP_089749.1| hypothetical protein BLi00076 [Bacillus licheniformis ATCC 14580]
 gi|319648587|ref|ZP_08002801.1| hypothetical protein HMPREF1012_03840 [Bacillus sp. BT1B_CT2]
 gi|52001769|gb|AAU21711.1| putative Nucleic acid-binding OB-fold protein,contains S1 domain
           [Bacillus licheniformis ATCC 14580]
 gi|52346422|gb|AAU39056.1| YabR [Bacillus licheniformis ATCC 14580]
 gi|317389354|gb|EFV70167.1| hypothetical protein HMPREF1012_03840 [Bacillus sp. BT1B_CT2]
          Length = 132

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS+K
Sbjct: 64  EKDGKIGLSIK 74


>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
          Length = 282

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG-TQ 370
            R DGR     R+I  + G++ +  GS+    G+T+ I  V    RE    + + +G   
Sbjct: 36  KRHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSV-FDPRE----IPNKTGYCV 90

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           + +    + F P +     ++      E  +  + +RA+ P +       + + + + + 
Sbjct: 91  QGELFCEFKFAPFS-HRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVI 149

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM- 489
           ++ GS+  A +  +SLAL +AGVP+   V    +G+     D   L D +  E+    + 
Sbjct: 150 DNGGSALAAAIMAASLALANAGVPMFGLVTASTVGIC----DQTYLVDPTDTEEAFCSIK 205

Query: 490 DFKVAGTDSGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEMSK 537
             +    + GI       + G ISE  +M           + +LNE+ K
Sbjct: 206 TAQGTADNHGIIVQAALPQHGQISEMFVMGSMDMNVIEHSMDLLNEIHK 254



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY--QERTYAVG 71
           R + L+TG ++ Q+ G+     G T ++ +V   R         P    Y  Q   +   
Sbjct: 47  RNIFLKTGIVS-QAKGSAYIEIGNTKIICSVFDPRE-------IPNKTGYCVQGELFCEF 98

Query: 72  KI-PGGYLRRESRPTE-NEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
           K  P  + +R+    +  E   S ++ R++ P     +    +  V   V+  D   S  
Sbjct: 99  KFAPFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVI--DNGGSAL 156

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
             +++AAS AL  +G+P  G V  + V   +  Y+++P   E+ 
Sbjct: 157 AAAIMAASLALANAGVPMFGLVTASTVGICDQTYLVDPTDTEEA 200


>gi|317122201|ref|YP_004102204.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
 gi|315592181|gb|ADU51477.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
          Length = 120

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  +  FGAFV     R GLVHIS+++   V   SD +  GDTV VK+L  D
Sbjct: 7   VGDIVEGTVDGITGFGAFVKLPDGRTGLVHISEIAHGWVENVSDHLSVGDTVKVKVLRID 66

Query: 679 D-RGKIKLSMKVVDQNT 694
           +   KI LS+K      
Sbjct: 67  EANNKIALSIKATQPAP 83


>gi|302385050|ref|YP_003820872.1| Tex-like protein protein-like protein [Clostridium saccharolyticum
           WM1]
 gi|302195678|gb|ADL03249.1| Tex-like protein protein-like protein [Clostridium saccharolyticum
           WM1]
          Length = 713

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 594 KIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K A     ++ A             +   + KG V  V+DFGAFV     +DGLVHISQ+
Sbjct: 616 KPARDPRDQMPAPILRTDVMEMKDLQPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQM 675

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S + +    + V  GD V VK++  D  + +I L+MK
Sbjct: 676 SDKFIKHPLEAVSVGDIVEVKVISVDVQKKRIALTMK 712


>gi|226366001|ref|YP_002783784.1| transcriptional accessory protein [Rhodococcus opacus B4]
 gi|226244491|dbj|BAH54839.1| transcriptional accessory protein [Rhodococcus opacus B4]
          Length = 807

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 19/149 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVN------IDDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++   G  +R I+  T A  +      +DD   +   +  + E+E      R   ++
Sbjct: 565 VRKIVQTSGTGVREIIGNTSALRSLNPADFVDDRFGLPTVTDIIGELEKPGRDPRPEFKT 624

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    + K+         +G V  V  FGAFV     +DGLVH+S +S   V    DVV
Sbjct: 625 ATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVV 684

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           K GD V VK+L+ D+ R +I L++++ D+
Sbjct: 685 KSGDVVTVKVLEVDEARQRIGLTLRLDDE 713


>gi|266619787|ref|ZP_06112722.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM
           13479]
 gi|288868638|gb|EFD00937.1| putative SSU ribosomal protein S1P [Clostridium hathewayi DSM
           13479]
          Length = 347

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 94/254 (37%), Gaps = 24/254 (9%)

Query: 462 IAMGLVKDGDDFIILSDISG----DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
             +  V +    + L   +G     E+  G  D+++         +   +      E  +
Sbjct: 77  GTVAGVTEDQVLVDLKYYAGGVINKENINGDPDYQLQAEIHPGDEITATVISTDDGEGNI 136

Query: 518 VMALQQAKRGRLHI-------------LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR 564
            +++++A   RL               +     V   +   L      +    +  + + 
Sbjct: 137 ELSMKEANENRLWDKFAAMMADRTIVNVKIAEIVKGGAVAYLEGVRAFIPASKLAAEYVE 196

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           N+    GK I   V      +  D +    + S         +E         EV  +  
Sbjct: 197 NLEEYNGKTIEATV------ITADAEAKKLVLSGKEPARAKLQEEKNKKIARCEVGAVMD 250

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V  + ++GAF++      GL+HISQ+S +R+     V+KEG TV VK++   D  KI 
Sbjct: 251 GTVDTLKEYGAFINLENGLSGLLHISQISNQRIKHPGAVLKEGQTVKVKIISIKD-NKIS 309

Query: 685 LSMKVVDQNTGKPI 698
           LSMK ++ +    +
Sbjct: 310 LSMKALEPDEEIDL 323


>gi|283798764|ref|ZP_06347917.1| protein YhgF [Clostridium sp. M62/1]
 gi|291073448|gb|EFE10812.1| protein YhgF [Clostridium sp. M62/1]
          Length = 713

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 594 KIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K A     E+               +   I KG V  V+DFG FV     +DGLVHISQ+
Sbjct: 616 KPARDPRDEMPKPILRTDVMDIKDLKPGMILKGTVRNVIDFGVFVDIGVHQDGLVHISQM 675

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +   +    +VV  GD V VK+LD + ++ +I L+MK
Sbjct: 676 TDRYIKHPLEVVSVGDIVEVKVLDVNLEKKRIGLTMK 712


>gi|254452060|ref|ZP_05065497.1| RNA binding S1 domain protein [Octadecabacter antarcticus 238]
 gi|198266466|gb|EDY90736.1| RNA binding S1 domain protein [Octadecabacter antarcticus 238]
          Length = 773

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 564 RNVIGMGGKVIRGIVEQTGA------KVNIDDDGTVKIASSSLAEIEAA----REMIRSI 613
           R ++   G+ IR I+  T A      +  +DD   +      L E+E      R   ++ 
Sbjct: 576 RKIVQACGRDIRAIMGDTSALAGLRAEQFVDDSFGLPTVRDILTELEKPGRDPRPTFKTA 635

Query: 614 TDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           T    +N I         +G V  V  FGAFV     +DGLVH+SQL+   V    D+VK
Sbjct: 636 TFADGINSITDLKSGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHDIVK 695

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            GD V V++ + D  R +I LSM+    +   P
Sbjct: 696 AGDVVRVRVTEIDVPRKRIALSMRKDGGDAPSP 728


>gi|193657113|ref|XP_001946838.1| PREDICTED: nucleolar protein of 40 kDa-like [Acyrthosiphon pisum]
          Length = 227

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +N I+ G+V  V ++GAF+   G +  GLVH +QLS   V   +DV+ +GD +W K++  
Sbjct: 5   INDIFIGEVSSVQNYGAFIRIPGNKQQGLVHRTQLSRVPVDDATDVLSKGDKIWAKVIGM 64

Query: 678 DDRGKIKLSMKVVDQNTGKPI 698
           DD GKI LSMK+VDQ +G+ +
Sbjct: 65  DD-GKISLSMKLVDQGSGRDL 84


>gi|226322502|ref|ZP_03798020.1| hypothetical protein COPCOM_00273 [Coprococcus comes ATCC 27758]
 gi|225209119|gb|EEG91473.1| hypothetical protein COPCOM_00273 [Coprococcus comes ATCC 27758]
          Length = 629

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   +G+G   +R IV++             K A     E+               + 
Sbjct: 508 KKLAEELGIGEITLRDIVKELE-----------KPARDPRDEMPKPILRTDVLDMKDLKE 556

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I KG V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D 
Sbjct: 557 GMILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDRFIKHPLEAVSVGDVVDVKVMSVDL 616

Query: 679 DRGKIKLSMKVVD 691
            + +I+L+M+ + 
Sbjct: 617 QKKRIQLTMRGIQ 629


>gi|108761556|ref|YP_629648.1| S1 RNA-binding domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108465436|gb|ABF90621.1| S1 RNA binding domain protein [Myxococcus xanthus DK 1622]
          Length = 783

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 7/103 (6%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
               RE +RS+ DV E   + +G V  V  FGAFV     +DGLVH+SQ+ST  V   S+
Sbjct: 627 APQHREDLRSLEDVKEG-MVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSE 685

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVD-----QNTGKPIV 699
           VVK GD + V++L  D  R ++ LS++ V      Q +G+P V
Sbjct: 686 VVKVGDRLTVRVLTVDLARKRLALSVRAVQEGGAPQPSGRPPV 728


>gi|227504779|ref|ZP_03934828.1| transcription accessory protein [Corynebacterium striatum ATCC
           6940]
 gi|227198629|gb|EEI78677.1| transcription accessory protein [Corynebacterium striatum ATCC
           6940]
          Length = 768

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ G  V VK+++ D  
Sbjct: 642 MILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSNKFISDPHEVVRSGQVVKVKVMEVDVQ 701

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I LS++ +D   G+P
Sbjct: 702 RQRIGLSLR-LDDEPGQP 718


>gi|332808269|ref|XP_001158546.2| PREDICTED: nucleolar protein of 40 kDa isoform 2 [Pan troglodytes]
          Length = 243

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G  + GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGKPI 698
           SMKVV+Q TGK +
Sbjct: 62  SMKVVNQGTGKDL 74


>gi|291523544|emb|CBK81837.1| Ribosomal protein S1 [Coprococcus catus GD/7]
          Length = 235

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D +    + S    E E A     +  D   V  IY G+V ++  FGAFV F     
Sbjct: 94  ITVDPEEKRLVLSGKAVEQEKAAAERAAKMDAVNVGDIYDGKVERITSFGAFVGFADDLS 153

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           GLVHISQ++ + +   ++VVK GD V VK++   D GKI LSMK       +
Sbjct: 154 GLVHISQMANKHIESPNEVVKVGDEVKVKVIGKKD-GKISLSMKAALDADAE 204


>gi|219854068|ref|YP_002471190.1| hypothetical protein CKR_0725 [Clostridium kluyveri NBRC 12016]
 gi|219567792|dbj|BAH05776.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 317

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I    + N I  G V KV++ GAF+      +GLVHIS++S E +    +V++ GD
Sbjct: 197 PWENIGKKYKSNDIVDGIVSKVINIGAFIEIEPGIEGLVHISEISQEHITTPEEVLRVGD 256

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVD 691
            V VK+L+ D++  +I LS+K   
Sbjct: 257 KVKVKILNIDEKASRISLSIKEAQ 280



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P   I     D ++  IG   KV    ++++  K+         + S    E   
Sbjct: 58  LRAFIPASHISVKYTDDLKEFIGKTLKVKLIQLDKSKNKI---------VLSGKEVEKLE 108

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             EM + +          +G+V ++ +FG FV   G  +GLVHIS+LS +++   S+VV 
Sbjct: 109 LEEMSKKLWSTISKGDKIEGRVSRITNFGVFVDL-GGVEGLVHISELSWKKIKDPSEVVS 167

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD + V +L+ + DR +I LS+K    +  + I
Sbjct: 168 VGDKLKVYVLNLNQDRNRISLSIKRTLNSPWENI 201


>gi|126652083|ref|ZP_01724272.1| hypothetical protein BB14905_11570 [Bacillus sp. B14905]
 gi|126591173|gb|EAZ85283.1| hypothetical protein BB14905_11570 [Bacillus sp. B14905]
          Length = 125

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    E+  +  G+V  +  +GAFV       GLVHIS+++   V   S+ +  G  V V
Sbjct: 1   MVKKYELGDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVEV 60

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTG 695
           K+L+ D+   KI LSM+ + +   
Sbjct: 61  KILEIDEEAEKISLSMRALQERPA 84


>gi|21231593|ref|NP_637510.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113282|gb|AAM41434.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 787

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   I +G V  V  FGAFV     +DG
Sbjct: 621 DILKEMEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMILEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 681 LVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTRRLSDTPPPAD 733


>gi|300112899|ref|YP_003759474.1| 30S ribosomal protein S1 [Nitrosococcus watsonii C-113]
 gi|299538836|gb|ADJ27153.1| ribosomal protein S1 [Nitrosococcus watsonii C-113]
          Length = 561

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 105/275 (38%), Gaps = 22/275 (8%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPV----AGIAMGLVKDGDDFIILS-DISGDEDH 485
           ++D   +  ++   ++      + I   V    AG     V   + F     +++  E  
Sbjct: 13  QADMPMAPGSIVTGTV------MEIRSDVVIVNAGFKSEGVISAEQFRDEKGNLNISEGD 66

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           L  +  +      G T +           N +  A +  +     +  ++    +     
Sbjct: 67  LVEVALEAIEDGFGETRLSRQKAKEARVWNDLEGAFEAGETITGVLTGKVKGGFTVDLNG 126

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P   + A P      +     +     +++    +       V   +   AE  A
Sbjct: 127 VRAFLPGSLVDARPVRDTAYLESKELEFKLIKLDRRRNNI------VVSRRAVMEAEYSA 180

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            RE + S        K  KG V  + D+GAFV   G  DGL+HI+ +S +R+   S+VV 
Sbjct: 181 EREALLSSLGE---GKTVKGVVKNLTDYGAFVDL-GGLDGLLHITDMSWKRIKHPSEVVN 236

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            GD + V++L FD +R ++ L +K + ++  K + 
Sbjct: 237 IGDDITVQVLKFDKERQRVSLGLKQMGEDPWKDLA 271



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +                 +    G++  + DFG FV   G  D
Sbjct: 333 LDIDEERRRISLGMKQCKPN----PWEEFAHRYNKDDRVAGEIKSITDFGIFVGLEGGID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S    A   +++   K+GD V   +L  D +R +I L +K ++ + 
Sbjct: 389 GLVHLSDISWS--ASGEEIIRDYKKGDQVEAVVLAIDPERERISLGVKQLEDDP 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQV 627
              ++     VNI DD TV++               +   +  + +           G+V
Sbjct: 225 WKRIKHPSEVVNIGDDITVQVLKFDKERQRVSLGLKQMGEDPWKDLARRYLDGTRLFGKV 284

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             V D+G FV      +GLVH+S++    +    S +V+ G+ V V +LD D +R +I L
Sbjct: 285 TNVTDYGCFVEIEEGVEGLVHMSEMDWTNKNIHPSKMVQVGEEVEVVVLDIDEERRRISL 344

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 345 GMKQCKPNPWEE 356



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVD 691
           GA +      +G +  S+++ ER+      +  GD++  K    D + + I LS++  D
Sbjct: 465 GAVIELAAGVEGHLRASEIARERIDDARTSLNVGDSIEAKFTGIDRKNRVITLSVRAKD 523


>gi|170748864|ref|YP_001755124.1| 30S ribosomal protein S1 [Methylobacterium radiotolerans JCM 2831]
 gi|170655386|gb|ACB24441.1| ribosomal protein S1 [Methylobacterium radiotolerans JCM 2831]
          Length = 570

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 99/251 (39%), Gaps = 16/251 (6%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----GITAMQMDMKI 509
           I K VA I +G   +G   +      G E  L   D      D      G   +  D   
Sbjct: 42  IEKDVAVIDIGAKTEGRVALKEFTGPGREGELKVGDEVEVYVDRIENALGEAVISRDKAR 101

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              S   +  + +   R    I N++    +        F PR ++   P   +  ++G 
Sbjct: 102 REESWVKLEKSFENNDRVTGTIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPLLGT 161

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
                   +++          G + ++  ++ E   A +    + ++ E  ++  G V  
Sbjct: 162 PQPFQILKMDRRR--------GNIVVSRRTVLEESRAEQRSELVANLEEG-QVIDGVVKN 212

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + ++GAFV   G  DGL+H++ ++  RV   S+VV  G TV VK++  + +  +I L +K
Sbjct: 213 ITEYGAFVDL-GGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIKINHETHRISLGIK 271

Query: 689 VVDQNTGKPIV 699
            +  +  + I 
Sbjct: 272 QLLADPWEGIA 282



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I          KG+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 276 DPWEGIAARYPEGAKLKGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 335

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V++L+ D  + +I L +K   QN  +
Sbjct: 336 SQEVEVQILEVDPVKRRISLGLKQTLQNPWE 366



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 96/249 (38%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S +  +   +K+  I    +     
Sbjct: 208 GVVKNITEYGAFVDLGGIDGLLHVTDMAWRRVNHPSEVVTIGQTVKVKIIK---INHETH 264

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +L +  + ++    +  +   RV  +      +   +  G + +  + E + 
Sbjct: 265 RISLGIKQLLADPWEGIAARYPEGAKLKGRVTNITDYGAFVE--LEPGIEGLIHVSEMSW 322

Query: 583 AKVNIDDDGTVKIASSSLAEIEAA---------------REMIRSITDVPEVNKIYKGQV 627
            K N+     V  +     +I                  +    +  +   V    +G+V
Sbjct: 323 TKKNVHPGKIVSTSQEVEVQILEVDPVKRRISLGLKQTLQNPWEAFAEKHPVGSEVEGEV 382

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
               +FG F+   G  DG+VH+S L   R   +  +  K+GD V  ++LD D ++ +I L
Sbjct: 383 KNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFKKGDMVRAQVLDVDVEKERISL 442

Query: 686 SMKVVDQNT 694
            +K +  + 
Sbjct: 443 GVKQLGGDP 451


>gi|304405799|ref|ZP_07387457.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304345042|gb|EFM10878.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 162

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V    D +K  D V VK+++ 
Sbjct: 4   EVGAKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVKDHLKLEDVVKVKVINV 63

Query: 678 DDRGKIKLSMK-VVDQNTGKP 697
           D  GKI LS+K  +D+  G+P
Sbjct: 64  DKDGKIGLSIKQAIDRPEGQP 84


>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
 gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
          Length = 245

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 98/243 (40%), Gaps = 12/243 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            +   + +R+DGR    +R     +        GSS   +G+ + I +V  G +E    +
Sbjct: 5   EIYSPEGLRVDGRRWNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVK-GPKEPS--L 61

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            S     +    +  N    +  E S+      RR +       R  +  +         
Sbjct: 62  RSQMDPTKALLKVSVNITKFSKTERSKTSHKNERRVLEIQTALTRTFNKNVMLHIYPRTL 121

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG- 481
           + I   + + DG      + G +LAL+DAG+ +   ++G+++GL     D   L +++  
Sbjct: 122 IDIEIHVLQQDGGLVGTLINGITLALIDAGIAMFDYISGVSVGLY----DTTPLLEVNSL 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN-IMVMALQQAKRGRLHILNEMSKVLS 540
           +E+ +  +   V G    ++ + ++ KI       ++ + +  A R R  +++   +  +
Sbjct: 178 EENVMSSVTLGVVGKTEKLSLLLVEDKIPLDRLESVLAIGIAGAHRVR-ELMDSELRKRA 236

Query: 541 ESR 543
           E R
Sbjct: 237 EKR 239



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 76/208 (36%), Gaps = 12/208 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYLRRES 82
           +DG+     G   ++  V   +         P    L V+     ++  +      + E 
Sbjct: 36  ADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKALLKVSVNITKFSKTERSKTSHKNER 95

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
           R  E +  ++R  ++++  +     +    + I+V+Q D         +   + AL+ +G
Sbjct: 96  RVLEIQTALTRTFNKNV--MLHIYPRTLIDIEIHVLQQDGG--LVGTLINGITLALIDAG 151

Query: 143 LPFEGPVVGAQVDYINGQYVL--NPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVV 200
           +     + G  V   +   +L  N   +    S+ L V G  + + ++ +E   +  D +
Sbjct: 152 IAMFDYISGVSVGLYDTTPLLEVNSLEENVMSSVTLGVVGKTEKLSLLLVEDK-IPLDRL 210

Query: 201 LDAIIFGHNECKPVIEAIS-KLAKMCAK 227
              +  G      V E +  +L K   K
Sbjct: 211 ESVLAIGIAGAHRVRELMDSELRKRAEK 238


>gi|42567185|ref|NP_194479.2| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
 gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
 gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
          Length = 256

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R    Q G +    GS+    G+T+ IV V  G RE ++   ++  +   
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSV-FGPRESKK---AMVYSDVG 89

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
               + ++   A+  + +      +E  +  +  +A+  V+        T+ + + + ES
Sbjct: 90  RLNCNVSYTNFASPTLGQ--GTDHKE--YSSMLHKALEGVIMMETFPKTTVDVFALVLES 145

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  +SLAL DAG+ +   +  +++  +       ++ D   +E+      F 
Sbjct: 146 GGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKS----LMIDPVTEEEGCEDGSFM 201

Query: 493 VAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +    S   IT + +    G  +   +  A+Q        +   M   L +S
Sbjct: 202 MTCMPSRYEITQLTIT---GEWTTPNINEAMQLCLDASSKLGEIMRDCLKQS 250



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 25/223 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAV 70
           RP  L+TG ++  + G+  A +G T V+ +V   R  K      D   L  N     +A 
Sbjct: 44  RPALLQTGAVSS-ASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFAS 102

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
             +  G   +E          S M+ +++    +     K    V   V++    S   V
Sbjct: 103 PTLGQGTDHKE---------YSSMLHKALEGVIMMETFPKTTVDVFALVLES-GGSDLSV 152

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAV 185
           + +  AS AL  +G+     +    V  I    +++P  +E   + GS  +    ++  +
Sbjct: 153 L-ISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEI 211

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
             + +   + +   + +A+    +    +     ++ + C K+
Sbjct: 212 TQLTITG-EWTTPNINEAMQLCLDASSKL----GEIMRDCLKQ 249


>gi|297282805|ref|XP_002802330.1| PREDICTED: nucleolar protein of 40 kDa [Macaca mulatta]
          Length = 243

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G  + GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGKPI 698
           SMKVV+Q TGK +
Sbjct: 62  SMKVVNQGTGKDL 74


>gi|240144542|ref|ZP_04743143.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
 gi|257203431|gb|EEV01716.1| putative SSU ribosomal protein S1P [Roseburia intestinalis L1-82]
          Length = 303

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 7/197 (3%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV---EIMA 557
           T +Q D   G I  +        A      ++ + + V    +  +              
Sbjct: 74  TVVQTDDGAGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAF 133

Query: 558 IPPDQI-RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           IP  QI  + +      I   +E     V+ + +  V    +   E EA     +    V
Sbjct: 134 IPASQITLDYVEDTDAWIGKEIEVRVITVDAEKEKLVLSGKAVAREAEAEERNHKISMIV 193

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P    + +G V  +M +GAF++      GLVHISQ+   R+ K S+V+KEG  V VK+++
Sbjct: 194 P--GTVMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKVKVVN 251

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D  KI LSMK + + 
Sbjct: 252 TND-NKISLSMKALQEE 267


>gi|86738935|ref|YP_479335.1| RNA binding S1 [Frankia sp. CcI3]
 gi|86565797|gb|ABD09606.1| RNA binding S1 [Frankia sp. CcI3]
          Length = 864

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK GD V VK+LD D  
Sbjct: 663 MTLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVSDPREVVKPGDIVTVKVLDVDIP 722

Query: 680 RGKIKLSMKVVDQ 692
           R +I L++++ D+
Sbjct: 723 RKRISLTLRLDDE 735


>gi|319648686|ref|ZP_08002897.1| YdcI protein [Bacillus sp. BT1B_CT2]
 gi|317389105|gb|EFV69921.1| YdcI protein [Bacillus sp. BT1B_CT2]
          Length = 720

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 131/358 (36%), Gaps = 53/358 (14%)

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ++ D L    R  + +  N       +  E++R   P  +      +  ARR  
Sbjct: 386 SRETEQFIADLLKDIDRKVYYLIVNEAGASVYSASELAREEFPDLQVEERSAVSIARRLQ 445

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 446 DPLAELVKIDPKSVGVGQYQHDVSQKKLNDSLRFVVETVVNQVGVNVNTASAALLQYVAG 505

Query: 455 ISKPVAGIAMGLVKDGDDFII---LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           +SK VA   +    +   F     L DI                   G       +   G
Sbjct: 506 LSKTVAANIVKKRDEIGKFTSRKELKDIPRLGAKTYEQCIGFLRVPDG----DEPLDRTG 561

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I         +  K+  L      +K L +   +L               +    +G+G 
Sbjct: 562 IHPESYKETRELLKKLGLSTAQIGTKELQDKINEL------------NISEAAEQLGIGE 609

Query: 572 KVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             ++ I  Q T  + +  D+    +  + + ++E  +E +             +G V  V
Sbjct: 610 ITLKDICAQLTRPERDPRDEVPKPLLKTDVLQLEDLKEGME-----------LQGTVRNV 658

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +DFGAFV     +DGLVHIS+LS   V    DVV  GD V V + D D  +G++ LSM
Sbjct: 659 VDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSM 716


>gi|283780187|ref|YP_003370942.1| 30S ribosomal protein S1 [Pirellula staleyi DSM 6068]
 gi|283438640|gb|ADB17082.1| ribosomal protein S1 [Pirellula staleyi DSM 6068]
          Length = 600

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 33/297 (11%)

Query: 425 IVSEITESDGSSSMATVCGSSLALM----DAGVPISKP-VAGIAMGLVKDGDDFIILSDI 479
           +  E+ + D +     V   SL       D    + +  +  +  G+VK+  +F    D+
Sbjct: 179 VQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFGAFVDL 238

Query: 480 SGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +   H+  M ++  G  S + A+  ++        +MV+ + + K+     L +   
Sbjct: 239 GGIDGLLHITDMSWERIGHPSEMVAIDQEI-------EVMVLHIDREKKKIALGLKQKEG 291

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVI--GMGGKVIRGIVEQTGAK--------VNI 587
                          V+   +        +    G + +  I E +  +        VNI
Sbjct: 292 NPWADVDTKYPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRRVNHPSELVNI 351

Query: 588 DDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            D+ +V I               +        + +   V+ I +G+V  + ++GAFV   
Sbjct: 352 GDEISVVILGVDKDGQQLSLGMKQTQENPWTRVAEKYPVDTIVEGKVRNLTNYGAFVELE 411

Query: 641 GARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              DGL+H+S +S  R ++  S+++++G  V  K+L  D +R +I L +K +D++  
Sbjct: 412 EGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPW 468



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  ++    P  I + IG         V+    K+   D+    I  S  + IE 
Sbjct: 154 VNVFLPASQVDIRRPADIGDYIGRT-------VQCEVLKI---DEARRNIVVSRRSLIER 203

Query: 606 AREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            RE  R       E+ ++ KG V  + +FGAFV   G  DGL+HI+ +S ER+   S++V
Sbjct: 204 QREEDREALLKELEIGQVRKGVVKNIAEFGAFVDL-GGIDGLLHITDMSWERIGHPSEMV 262

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
                + V +L  D ++ KI L +K  + N    +
Sbjct: 263 AIDQEIEVMVLHIDREKKKIALGLKQKEGNPWADV 297



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
              R I    +  ++  G V K+ +FG FV      +GL+HIS+L+  +V    DVVK G
Sbjct: 467 PWARDIPGKYQPGQVVSGAVTKITNFGVFVGLEDGLEGLLHISELADHKVENPEDVVKVG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D + VK+L  D D  KI LS K V+
Sbjct: 527 DKIDVKILRVDIDERKIGLSRKRVE 551


>gi|254522654|ref|ZP_05134709.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
 gi|219720245|gb|EED38770.1| S1 RNA binding domain protein [Stenotrophomonas sp. SKA14]
          Length = 795

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 594 KIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           K       E +AAR  E +  I D+ E   + +G V  V  FGAFV     +DGL+HIS 
Sbjct: 633 KPGRDPRPEFKAARFAEGVEDIKDLREG-MVLEGVVSNVAAFGAFVDIGVHQDGLIHISA 691

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD---QNTGKP 697
           LS   V    +VVK GD V VK+L+ D  R +I L+ ++ D   Q T +P
Sbjct: 692 LSDTFVKDPREVVKAGDIVKVKVLEVDVARKRIALTRRLDDTPGQATSRP 741


>gi|52784382|ref|YP_090211.1| YdcI [Bacillus licheniformis ATCC 14580]
 gi|163119249|ref|YP_077801.2| RNA-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52346884|gb|AAU39518.1| YdcI [Bacillus licheniformis ATCC 14580]
 gi|145902755|gb|AAU22163.2| putative RNA binding protein containing S1 RNA binding domain,YdcI
           [Bacillus licheniformis ATCC 14580]
          Length = 720

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 131/358 (36%), Gaps = 53/358 (14%)

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ++ D L    R  + +  N       +  E++R   P  +      +  ARR  
Sbjct: 386 SRETEQFIADLLKDIDRKVYYLIVNEAGASVYSASELAREEFPDLQVEERSAVSIARRLQ 445

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 446 DPLAELVKIDPKSVGVGQYQHDVSQKKLNDSLRFVVETVVNQVGVNVNTASAALLQYVAG 505

Query: 455 ISKPVAGIAMGLVKDGDDFII---LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           +SK VA   +    +   F     L DI                   G       +   G
Sbjct: 506 LSKTVAANIVKKRDEIGKFTSRKELKDIPRLGAKTYEQCIGFLRVPDG----DEPLDRTG 561

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I         +  K+  L      +K L +   +L               +    +G+G 
Sbjct: 562 IHPESYKETRELLKKLGLSTAQIGTKELQDKINEL------------NISEAAEQLGIGE 609

Query: 572 KVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             ++ I  Q T  + +  D+    +  + + ++E  +E +             +G V  V
Sbjct: 610 ITLKDICAQLTRPERDPRDEVPKPLLKTDVLQLEDLKEGME-----------LQGTVRNV 658

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +DFGAFV     +DGLVHIS+LS   V    DVV  GD V V + D D  +G++ LSM
Sbjct: 659 VDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSM 716


>gi|302879053|ref|YP_003847617.1| Tex-like protein-like [Gallionella capsiferriformans ES-2]
 gi|302581842|gb|ADL55853.1| Tex-like protein-like [Gallionella capsiferriformans ES-2]
          Length = 779

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + I +G V  V  FGAFV     +DGLVHIS L+   V     VVK G  V VK+L+ 
Sbjct: 661 QPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALANSFVKDPHTVVKAGQIVKVKVLEV 720

Query: 678 DD-RGKIKLSMK 688
           D+ R +I L+M+
Sbjct: 721 DEKRKRIALTMR 732


>gi|258515332|ref|YP_003191554.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779037|gb|ACV62931.1| hydroxymethylbutenyl pyrophosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 676

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + ++    G+ I      T   + I+      + S      E        + +  
Sbjct: 429 VDKGYVEDLSKYVGENI------TAQVIEINRIRRKVVLSRKAILEEEYANRKEELLNSL 482

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  +   G V ++ +FGAFV   G  DGL+HIS+++  RV   S++V+ GD V V +L  
Sbjct: 483 QEGQTVSGIVRRITNFGAFVDI-GGVDGLLHISEMAWYRVTHPSEIVQVGDEVTVMVLKI 541

Query: 678 DDR-GKIKLSMKVVDQNTGKPI 698
           D    KI L +K V  N  + +
Sbjct: 542 DRNADKISLGLKQVLANPWENV 563



 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++     V  I   +VV++  FGAFV      +GLVHIS L+   V K  DVV EG+
Sbjct: 559 PWENVDSKYPVGAIVAAKVVRLAPFGAFVQLEPGVEGLVHISHLADHHVEKPEDVVSEGE 618

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            V VK+L  D    +I+LS+K V
Sbjct: 619 EVNVKVLSVDTQEKRIRLSIKEV 641



 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 570 GGKVIRGIVEQTGAKVN-IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN--KIYKGQ 626
           G      I+E+   ++N + +   ++ +   L EI +A E ++   +V  ++   I KG 
Sbjct: 259 GASTPDWIIEEVKKRMNELGEMNGIEESKEQLEEINSAEEGMQDSVEVKALHNGDIVKGV 318

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKL 685
           VV++      V      +G +   +LS+  +    +VVK GD + V ++   D+ G+IKL
Sbjct: 319 VVQIGQDEVLVDVGSKSEGFISAKELSSFNINSPDEVVKIGDEIDVFVISAEDNEGRIKL 378

Query: 686 S 686
           S
Sbjct: 379 S 379


>gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025513|ref|YP_001933285.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum SS14]
 gi|3322552|gb|AAC65266.1| ribosomal protein S1 (rpsA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018088|gb|ACD70706.1| ribosomal protein S1 [Treponema pallidum subsp. pallidum SS14]
          Length = 863

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   VN + KG+V K+ DFGAF+      +GL HIS+ S  ++ +K SD+VK 
Sbjct: 567 DPWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKI 626

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L +D   G++ L +K V  N  + I
Sbjct: 627 GDEVECMILGYDIQAGRVSLGLKQVTANPWEEI 659



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 6/151 (3%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +      D   ++IG+  K     + Q+      +D+  +            
Sbjct: 424 MMAFLPISQSDCQKVDAPESLIGLTSKFYIERISQSKQHRG-NDNIVINRRRYLEERARQ 482

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           ARE   +      +     G V     FGAF+   G  DGL+H++ +S   VA+  + VK
Sbjct: 483 AREEFFNSVH---IEDSVSGVVKSFTSFGAFIDLGGF-DGLLHVNDMSWGHVARPREFVK 538

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           +G T+ +K++  D    +I LS+K    +  
Sbjct: 539 KGQTIELKVIRLDQAEKRINLSLKHFQPDPW 569



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEG 667
               I     V   +  ++VKV + GAF+      DG +H+  LS  +  + +D  ++ G
Sbjct: 655 PWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVG 714

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             +   +++ D +  +I+L +K +  N  +
Sbjct: 715 KEIECMVIECDPQARRIRLGVKQLSDNPWQ 744



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK--- 665
             +   +   V    +G+V  V DFG FV   G  +GLV    L   R     + ++   
Sbjct: 742 PWQVFANAYGVGSTVEGEVSSVTDFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYA 801

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            GD V   ++D +    K+  S++ 
Sbjct: 802 VGDRVKAVIVDMNVKDRKVAFSVRD 826


>gi|238019394|ref|ZP_04599820.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
 gi|237864093|gb|EEP65383.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
          Length = 632

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 11/196 (5%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
             + M           ++ A ++ +      ++ +   L  +   L  F P  +      
Sbjct: 355 IYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRGFIPLSQGDVHFV 414

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + N++G          E     + ID+     + S         +  +        V 
Sbjct: 415 KSLDNLVG---------TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVG 465

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
             YKG V K+M +GAFV   G  +GL+HIS +S +++ K  DV+  G  + VKL  FD +
Sbjct: 466 DNYKGIVRKIMPYGAFVDI-GGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDAE 524

Query: 680 RGKIKLSMKVVDQNTG 695
             K+ LS+K + ++  
Sbjct: 525 SNKLSLSLKALSKSPW 540



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   V  +  G+VV+++ +GAFV       GL+HISQ++ +R AK  D +  
Sbjct: 537 KSPWDVAEETLHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNR 596

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V VK++  + D  K+ L++  + +
Sbjct: 597 GQEVEVKIISLNKDEKKLGLALTELME 623



 Score = 44.1 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           + +G VV+V D  A+V F    + +++ +++S        DV+K GD +   +++   + 
Sbjct: 293 VVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEIKAVIMNHIKED 352

Query: 681 GKIKLSMKVVDQNT 694
             I LSM  + ++ 
Sbjct: 353 NPIYLSMTRLAKDE 366



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+  ++V+  G ++   I+        I +D  + ++ + LA+     E  + + +  E 
Sbjct: 328 PESAKDVLKNGDEIKAVIMNH------IKEDNPIYLSMTRLAKD----EDWQYVIEAQEK 377

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++    + +  +  G  V     R G + +SQ     V    ++V  G     K+L+ D+
Sbjct: 378 DEAIVCKGIDAIPAGLVVTVKSLR-GFIPLSQGDVHFVKSLDNLV--GTEFEAKVLEIDE 434

Query: 680 RG-KIKLSMKVVDQ 692
           +  ++ LS + V +
Sbjct: 435 KKNRLVLSRRAVLE 448


>gi|188991422|ref|YP_001903432.1| Putative RNA-binding protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733182|emb|CAP51380.1| Putative RNA-binding protein [Xanthomonas campestris pv.
           campestris]
          Length = 787

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V  FGAFV     +DGLVHIS LS   V    DVVK GD V VK+L+ 
Sbjct: 653 KPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEV 712

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I L+ ++ D      
Sbjct: 713 DVARKRIALTRRLSDTPPPAD 733


>gi|121608029|ref|YP_995836.1| RNA-binding S1 domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552669|gb|ABM56818.1| RNA binding S1 domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 794

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 105/284 (36%), Gaps = 46/284 (16%)

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII---LSDIS 480
           R +  + E   ++    +  +S+ L+     +S  VA   +   +    F     L D++
Sbjct: 496 RTLGTVVEDCVNAVGVDLNTASVPLLSRVSGLSASVAKAVVCWREAHGAFRSRRQLLDVA 555

Query: 481 GD-----EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           G      E   G +  +       +T +  +      +  ++   + +  +    ++   
Sbjct: 556 GLGAKTFEQSAGFLRIRGGENPLDMTGVHPE------TYPVIEQIMARTGKPVAELMG-R 608

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVK 594
             +L   R +L                       G   +R I+ +      +   D  V 
Sbjct: 609 CDMLKTLRPELFANE-----------------KFGLITVRDILAELEKPGRDPRPDFKVA 651

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
             +  + +I   +E             + +G V  V  FGAFV     +D LVH+SQL+ 
Sbjct: 652 RFNDGVQDITDLKE-----------GMVLEGTVSNVAQFGAFVDLGVHQDALVHVSQLAH 700

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           + V    +VVK G  V V++L+ D  R +I L+MK +D    +P
Sbjct: 701 KFVNDAREVVKTGAIVKVRVLEVDLPRKRIALTMK-LDAAPARP 743


>gi|291059681|gb|ADD72416.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 829

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   VN + KG+V K+ DFGAF+      +GL HIS+ S  ++ +K SD+VK 
Sbjct: 533 DPWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKI 592

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L +D   G++ L +K V  N  + I
Sbjct: 593 GDEVECMILGYDIQAGRVSLGLKQVTANPWEEI 625



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 6/151 (3%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +      D   ++IG+  K     + Q+      +D+  +            
Sbjct: 390 MMAFLPISQSDCQKVDAPESLIGLTSKFYIERISQSKQHRG-NDNIVINRRRYLEERARQ 448

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           ARE   +      +     G V     FGAF+   G  DGL+H++ +S   VA+  + VK
Sbjct: 449 AREEFFNSVH---IEDSVSGVVKSFTSFGAFIDLGGF-DGLLHVNDMSWGHVARPREFVK 504

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           +G T+ +K++  D    +I LS+K    +  
Sbjct: 505 KGQTIELKVIRLDQAEKRINLSLKHFQPDPW 535



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEG 667
               I     V   +  ++VKV + GAF+      DG +H+  LS  +  + +D  ++ G
Sbjct: 621 PWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVG 680

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             +   +++ D +  +I+L +K +  N  +
Sbjct: 681 KEIECMVIECDPQARRIRLGVKQLSDNPWQ 710



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK--- 665
             +   +   V    +G+V  V DFG FV   G  +GLV    L   R     + ++   
Sbjct: 708 PWQVFANAYGVGSTVEGEVSSVTDFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYA 767

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            GD V   ++D +    K+  S++ 
Sbjct: 768 VGDRVKAVIVDMNVKDRKVAFSVRD 792


>gi|326316623|ref|YP_004234295.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373459|gb|ADX45728.1| Tex-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 788

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQLS + V    ++VK GD V VK+L+ 
Sbjct: 662 KEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVKVLEV 721

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           D  R +I L+MK +D    +
Sbjct: 722 DPVRKRISLTMK-LDAAPAR 740


>gi|251794092|ref|YP_003008823.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
 gi|247541718|gb|ACS98736.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 162

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V    D +K  D V VK+++ 
Sbjct: 4   EVGAKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVKDHLKIDDVVKVKVINV 63

Query: 678 DDRGKIKLSMK-VVDQNTGK 696
           D  GKI LS+K  VD+  G+
Sbjct: 64  DKDGKIGLSIKQAVDRPEGQ 83


>gi|125807271|ref|XP_001360333.1| GA20923 [Drosophila pseudoobscura pseudoobscura]
 gi|54635505|gb|EAL24908.1| GA20923 [Drosophila pseudoobscura pseudoobscura]
          Length = 1254

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGD 668
           + D PE  KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV    
Sbjct: 290 MADDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 349

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           TV VK++    + K+ LSMK VDQ +G+ +
Sbjct: 350 TVRVKVMSLTGQ-KVSLSMKEVDQESGRDL 378


>gi|329890647|ref|ZP_08268990.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568]
 gi|328845948|gb|EGF95512.1| ribosomal protein S1 [Brevundimonas diminuta ATCC 11568]
          Length = 565

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  +I +G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAILEEARAEQRTELVGQLQEG-EIREGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV+  S V+  GDTV V+++  + D  +I L MK +  +  
Sbjct: 229 DMSWKRVSHPSQVLAVGDTVKVQIVKINPDTQRISLGMKQLQSDPW 274



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     VN  Y G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 272 DPWDGVEAKYPVNAKYTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 331

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K    N  +
Sbjct: 332 SQEVDVIVLDVDSAKRRISLGLKQAQNNPWE 362



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A      +  +   V    +G+V    +FG FV      DG+VH+S L    V+    +
Sbjct: 355 QAQNNPWEAFLEAHPVGSTVEGEVKNATEFGLFVGLDNDIDGMVHLSDLDWN-VSGEEAI 413

Query: 664 --VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              ++G+ +  K+LD D ++ ++ L +K +  + 
Sbjct: 414 QRYRKGEVIKAKVLDVDIEKERVSLGVKQLGGDP 447



 Score = 39.1 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           F          V  S LS +R  + ++    GD V   +   D    ++ +S+K ++
Sbjct: 475 FGEDDAPVTAFVRKSDLSRDRNEQRTERFAVGDRVDAMITAVDKATRRVSVSIKALE 531


>gi|162455162|ref|YP_001617529.1| 30S ribosomal protein S1 [Sorangium cellulosum 'So ce 56']
 gi|161165744|emb|CAN97049.1| 30S ribosomal protein S1 [Sorangium cellulosum 'So ce 56']
          Length = 562

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R  +  F P  ++   P   +  +IG   +  +  V +   K      G + ++   L E
Sbjct: 125 RGGVKAFLPGSQVDLRPIRNLDKLIG---QTYKFKVIKFNKKR-----GNIVLSRRVLLE 176

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            E      +++  + E   + KG +  + ++GAFV   G  DGL+HI+ +S  RV   S+
Sbjct: 177 RERDEMKAKTLETLTEGMTV-KGTIKNITEYGAFVDL-GGIDGLLHITDMSWGRVNHPSE 234

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V + GD V VK+L ++ D  ++ L +K   ++  
Sbjct: 235 VFQVGDEVLVKVLKYNADTERVSLGLKQTQEDPW 268



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +     K  +G+V+ + D+GAFV      +GL+H+S++S  ++V   S +++ 
Sbjct: 266 DPWNHAEEAYPAGKKVRGKVMSITDYGAFVELEPGVEGLIHVSEMSWTKKVKHPSKLLEV 325

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           G  +  ++L+ D R  +I L +K ++ +  
Sbjct: 326 GQELECQVLEVDARAKRISLGLKQLEPDPW 355



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
           +     TD         G+V  + D+G FV      DG+VH S LS   RV   SD+  +
Sbjct: 353 DPWMLFTDKYHPGDKIAGKVRSLTDYGVFVGIEEGVDGMVHKSDLSWSVRVNNPSDLYHK 412

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V   +L  + D  K+ L +K +  +  
Sbjct: 413 GDDVEAIILSINHDEKKVSLGIKQLWDDPW 442



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                +T+ P    +   QVV ++D+G FV      +GL+  S +      K    +K G
Sbjct: 441 PWPSMLTEYPPGRVLDDAQVVSIVDYGVFVRLREGVEGLISQSDVQEPEEGK----LKVG 496

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           D V  ++   D    ++ L+MK +      P+
Sbjct: 497 DKVKAEISSLDTVDRRLFLTMKNIGMERPAPV 528


>gi|153953445|ref|YP_001394210.1| 30S ribosomal protein S1 [Clostridium kluyveri DSM 555]
 gi|146346326|gb|EDK32862.1| 30S ribosomal protein S1 [Clostridium kluyveri DSM 555]
          Length = 314

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I    + N I  G V KV++ GAF+      +GLVHIS++S E +    +V++ GD
Sbjct: 194 PWENIGKKYKSNDIVDGIVSKVINIGAFIEIEPGIEGLVHISEISQEHITTPEEVLRVGD 253

Query: 669 TVWVKLLDFDDR-GKIKLSMKVVD 691
            V VK+L+ D++  +I LS+K   
Sbjct: 254 KVKVKILNIDEKASRISLSIKEAQ 277



 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P   I     D ++  IG   KV    ++++  K+         + S    E   
Sbjct: 55  LRAFIPASHISVKYTDDLKEFIGKTLKVKLIQLDKSKNKI---------VLSGKEVEKLE 105

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             EM + +          +G+V ++ +FG FV   G  +GLVHIS+LS +++   S+VV 
Sbjct: 106 LEEMSKKLWSTISKGDKIEGRVSRITNFGVFVDL-GGVEGLVHISELSWKKIKDPSEVVS 164

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD + V +L+ + DR +I LS+K    +  + I
Sbjct: 165 VGDKLKVYVLNLNQDRNRISLSIKRTLNSPWENI 198


>gi|66768285|ref|YP_243047.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573617|gb|AAY49027.1| transcription-related protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 787

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   I +G V  V  FGAFV     +DG
Sbjct: 621 DILKEMEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMILEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 681 LVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTRRLSDTPPPAD 733


>gi|224120548|ref|XP_002318357.1| predicted protein [Populus trichocarpa]
 gi|222859030|gb|EEE96577.1| predicted protein [Populus trichocarpa]
          Length = 1207

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +  E+  +YKG+V +VMD G FV       ++GLVH+SQ++T R+    D VK    V+V
Sbjct: 248 NELELYGVYKGRVSRVMDTGCFVQLSDFRGKEGLVHVSQIATRRLGNAKDAVKRDQEVYV 307

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K++      K+ LSM+ VDQ++GK ++
Sbjct: 308 KVISILG-NKLSLSMRDVDQDSGKDLL 333


>gi|260824746|ref|XP_002607328.1| hypothetical protein BRAFLDRAFT_261238 [Branchiostoma floridae]
 gi|229292675|gb|EEN63338.1| hypothetical protein BRAFLDRAFT_261238 [Branchiostoma floridae]
          Length = 226

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVK 665
           R   +   ++P +N I++G+VV +  +G F+   G  ++GLVH SQ+S  RV    +VV 
Sbjct: 10  RGDRQGEDNLPAMNSIFQGEVVSLQPYGCFIKIPGCRKNGLVHKSQMSASRVEDPKEVVD 69

Query: 666 EGDTVWVKLLDFDD--RGKIKLSMKVVDQNTGKPI 698
            GD V+ K++   +   GKI LSMKVV+Q  G  +
Sbjct: 70  MGDRVYCKVISLGEGGNGKISLSMKVVNQGDGHDL 104


>gi|121535071|ref|ZP_01666888.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306321|gb|EAX47246.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
          Length = 139

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + +FGAFV   G + GLVHIS+++   V    D +KE D V VK+L  D+RGKI LS+
Sbjct: 14  TGITNFGAFVELPGGKVGLVHISEVADVYVRDVKDFLKEQDRVKVKVLSIDERGKIGLSI 73

Query: 688 KVVD-----QNTGKPIV 699
           + +      Q + +P V
Sbjct: 74  RQLQAPSSPQGSKRPPV 90


>gi|118594697|ref|ZP_01552044.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
 gi|118440475|gb|EAV47102.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
          Length = 503

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           MA  P  + ++  +         E     + ID      + S      E +     S+ +
Sbjct: 138 MAFLPGSLVDIRPVKDTAPFENKECELKVIKIDKKRNNVVVSRKAVMEEQSGTDRESVLE 197

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                   KG +  + D+GAFV   G  DGL+HI+ L+ +R+   S+++  GD +  ++L
Sbjct: 198 SIVEGANVKGIIKNITDYGAFVDL-GGIDGLLHITDLAWKRIKHPSEILNVGDEIEARVL 256

Query: 676 DFD-DRGKIKLSMKVVDQNTG 695
            FD ++ ++ L +K +D++  
Sbjct: 257 KFDQEKNRVSLGLKQLDEDPW 277



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAF+      +GLVH+S++    +    +  V+ GD V V +L+ D DR +
Sbjct: 292 GKVSNLTDYGAFIEIETGIEGLVHVSEMDWTNKNIHPTKAVQLGDEVEVMILEIDEDRRR 351

Query: 683 IKLSMKVVDQNTGKP 697
           + L MK    N  + 
Sbjct: 352 LSLGMKQCQANPWED 366



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +               +V++   GQ+  + DFG F+   G  D
Sbjct: 343 LEIDEDRRRLSLGMKQCQAN----PWEDFASNHKVDEKITGQIKSITDFGIFIGLPGEID 398

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GL+H+S +S        + V   K+ D +   ++  D ++ +I L +K + +N    I 
Sbjct: 399 GLIHLSDISWT--DSGEEAVKKYKKADELEAIIISIDVEKERISLGIKQLAENPNPEIA 455


>gi|46446398|ref|YP_007763.1| 30S ribosomal protein S1 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400039|emb|CAF23488.1| probable ribosomal protein S1 [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 587

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GK     +     K+NI+    V      L     +++        
Sbjct: 159 QIDNKRIKNLDDYLGKTYEFKI----LKINIERKNVVVSRRELLEAERISKKAEVLEHIQ 214

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P  + I +G V  + DFG F+      DGL+HI+ ++ +R+   S++V+ G  + V +L 
Sbjct: 215 P--SDIREGVVKNITDFGVFLDL-DGIDGLLHITDMTWKRIKHPSEMVQLGQKLEVMILS 271

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D D+G++ L +K    N    I
Sbjct: 272 VDKDKGRVALGLKQKGPNPWDQI 294



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              SI     V  + KG+V K+  FGAFV      +GL+H+++LS +   K  DVV +GD
Sbjct: 464 PWESIEKTMPVGSLVKGKVTKITAFGAFVELDSGIEGLIHVTELSDQAFGKVEDVVAKGD 523

Query: 669 TVWVKLLDFD-DRGKIKLSMKV--VDQN 693
            V  K++  D +  KI LS+K   +DQN
Sbjct: 524 EVTAKVIKLDPEHKKIALSIKEYLIDQN 551



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 30/259 (11%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G+VK+  DF +  D+ G +   H+  M +K     S +  +            +M++
Sbjct: 218 IREGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIKHPSEMVQLGQK-------LEVMIL 270

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP--PDQIRNVIGMGGKVIRGI 577
           ++ + K      L +      +   Q      RV    +   P      I  G + +  +
Sbjct: 271 SVDKDKGRVALGLKQKGPNPWDQIEQKYPPGTRVHGKIVNLLPYGAFIEIEPGIEGLIHV 330

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV----------------PEVNK 621
            E +  K NI D   V      +  I  + +       +                  V+ 
Sbjct: 331 SEMSWVK-NITDPSEVVKKGDDVEAIVLSVQKEEGKISLGIKQTEHNPWDDVEKKYPVSN 389

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-D 679
           I K ++  + ++GAFV      +GL+HIS LS  ++V+  S+V+++GD V   +L  D +
Sbjct: 390 IVKAEIRTLTNYGAFVELEPGVEGLIHISDLSWIKKVSHPSEVLRKGDVVDAIILSVDKE 449

Query: 680 RGKIKLSMKVVDQNTGKPI 698
             KI L +K +  N  + I
Sbjct: 450 SKKITLGVKQLSTNPWESI 468



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD+G + ++      +         I +  E   I KG+V++ +  G  V      +  +
Sbjct: 102 DDNGQIVLSREKAERLRQ----WEYILEHCEEGSIVKGRVIRKVKGGLMVDI--GMEAFL 155

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +R+    D +  G T   K+L  + +R  + +S + + +
Sbjct: 156 PGSQIDNKRIKNLDDYL--GKTYEFKILKINIERKNVVVSRRELLE 199


>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
 gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
 gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
           protein, putative (AFU_orthologue; AFUA_2G03740)
           [Aspergillus nidulans FGSC A4]
          Length = 265

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 90/249 (36%), Gaps = 29/249 (11%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL---GTREDEQYVDSL 366
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V     G R D       
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATG--GS 69

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH-GRLARRAIHPVLPQTAQFPYTLRI 425
           +G+      +  N    A+ +  R    S R+ G      R A    L        T+ I
Sbjct: 70  AGSSGAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISI 129

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD--------GDDFIILS 477
              +  SDGS   A V   +LAL+DAG+P+   + G   G+            D    L 
Sbjct: 130 HVSVLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMNDTLDPLL 189

Query: 478 DISGDEDHLGHMDFKVAGTDS-------------GITAMQMDMKIGGISENIMVMALQQA 524
           D+S  E+    + F    T S              ++ + MD K+       M+      
Sbjct: 190 DVSLPEEQ--ELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSKVHYSYIETMLAVGVDG 247

Query: 525 KRGRLHILN 533
            +    IL+
Sbjct: 248 CKQVREILD 256



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 16/140 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD--------GQDFFPLTVNYQERTYAVGKIPGGYL 78
           S G+     G T +L +V      +         G     + V+     +A         
Sbjct: 37  SSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSSGAVVEVDVNIAGFA----SVDRK 92

Query: 79  RRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           RR          I+  +  + +          +   + ++V+  D        ++ A + 
Sbjct: 93  RRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSVLSSDGSVLA--AAVNACTL 150

Query: 137 ALMLSGLPFEGPVVGAQVDY 156
           AL+ +G+P  G + G     
Sbjct: 151 ALVDAGIPMPGLLCGCTAGM 170


>gi|323702560|ref|ZP_08114223.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532534|gb|EGB22410.1| Tex-like protein [Desulfotomaculum nigrificans DSM 574]
          Length = 713

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
           R ++  I  ++   ++  G   +R I+           DG ++       ++        
Sbjct: 584 RSKLSKINVEETAKMLATGVPTLRDII-----------DGLLRPGRDPREDLPGPLFRTD 632

Query: 612 -SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
               +  +   + KG V  V+DFGAFV      DGLVH S+LS        DVV  GD V
Sbjct: 633 VLKIEDLQPGMVLKGTVRNVVDFGAFVDIGLKNDGLVHRSELSDRPFRHPLDVVAVGDIV 692

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V++L  D +RG++ LSMK
Sbjct: 693 DVRVLSVDLERGRVALSMK 711


>gi|262375129|ref|ZP_06068363.1| transcriptional accessory protein [Acinetobacter lwoffii SH145]
 gi|262310142|gb|EEY91271.1| transcriptional accessory protein [Acinetobacter lwoffii SH145]
          Length = 789

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 20/140 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+   D+   +      LAE+E               R+ 
Sbjct: 583 VKDIIGNT-----EIIRQVNAEEFADEKFGLPTIQDVLAELEKPGRDPRPEFRTAKFRDD 637

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E VA    VVK G  
Sbjct: 638 ITEVAQLSEGMQL-EGVVTNVTNFGAFVDVGVHQDGLVHISELTNEFVADPHKVVKPGQI 696

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V++L+ D +R ++ LSM+
Sbjct: 697 VQVRVLNVDAERNRVNLSMR 716


>gi|326202127|ref|ZP_08191997.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987922|gb|EGD48748.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           papyrosolvens DSM 2782]
          Length = 672

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            +++  A +  +  ++ +  +++  +  +   +  F P  +I       +   +    +V
Sbjct: 379 WDVIESAYESKQPVKVKVTEKVNGGVIGNASGVRVFIPASQISDRFIKDLSEFVKQVLQV 438

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
              I+E    K  +     + I  +  A           I +  E+ K YKGQV  +MDF
Sbjct: 439 --EIIELNKQKRKVVGSARILIEKNKEAASS-------VIWNSIEIGKTYKGQVKSLMDF 489

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  DGLVH+S+LS  ++   S+VVK GD + V +LDFD ++ +I L  K    
Sbjct: 490 GAFVDI-GGVDGLVHLSELSWSKIKHPSEVVKVGDEIIVSVLDFDKEKKRISLGYKKQAD 548

Query: 693 NTG 695
           N  
Sbjct: 549 NPW 551



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A        +  +V  +  G+VV+++ FGAFV      DGLVHISQ+S+ R+ K  D 
Sbjct: 545 KQADNPWAKAAEKYQVGNVATGKVVRLVPFGAFVELEEGIDGLVHISQISSVRLGKPGDA 604

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           +  G  V  K+++FD +  KI LS+K V+ 
Sbjct: 605 LTVGQQVEAKIIEFDAETKKISLSIKEVNP 634



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S        +I KG+++       F+      DG++ + + S +        +K G
Sbjct: 290 DAFESSLVTLTTGQITKGKIIGYNHNEVFIDMGYKSDGIIPMQEFSDDPDFNPEKSLKVG 349

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPIV 699
           D + V ++   D  G + LS K VD   G  ++
Sbjct: 350 DEIDVFVVRVNDGEGNVLLSKKRVDAVKGWDVI 382


>gi|120612074|ref|YP_971752.1| RNA-binding S1 domain-containing protein [Acidovorax citrulli
           AAC00-1]
 gi|120590538|gb|ABM33978.1| RNA binding S1 domain protein [Acidovorax citrulli AAC00-1]
          Length = 788

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQLS + V    ++VK GD V VK+L+ 
Sbjct: 662 KEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVKVLEV 721

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           D  R +I L+MK +D    +
Sbjct: 722 DPVRKRISLTMK-LDAAPAR 740


>gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
 gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
          Length = 382

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            K+   D    ++  S  A +E   E   +      +   + +G V ++ DFGAFV+  G
Sbjct: 151 VKIVELDREKNRVILSHKAVVEQELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVNV-G 209

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             DGLVHISQ+S +RV + SDV+ +G +V VK+L  D D  +I LS+K       + +
Sbjct: 210 DVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENV 267



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +++   +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 259 AQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 318

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMK-VVDQN 693
           + G  V VK+L+      +I LS+K  V++N
Sbjct: 319 EMGQEVKVKVLEVHAAEKRISLSIKEAVEEN 349



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V KV +    V+     DG++ IS+L+   + K SDVVK    + +K++  
Sbjct: 16  QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKL 75

Query: 678 DDRGKIKLSMKVVDQN 693
           +D   + LS + VD  
Sbjct: 76  EDDDLV-LSKRAVDAE 90


>gi|259046867|ref|ZP_05737268.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175]
 gi|259036490|gb|EEW37745.1| 30S ribosomal protein S1 [Granulicatella adiacens ATCC 49175]
          Length = 397

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I +   V  +  G V ++  FGAFV      +GLVHISQ++ + +A   +V+KEG 
Sbjct: 270 PWDNIEERAAVGSVLDGLVKRLTTFGAFVELFPGVEGLVHISQIAHQHIATPHEVLKEGQ 329

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQ 692
            V VK+L+   ++ +I LS+K + +
Sbjct: 330 EVQVKVLEVHPEQQRISLSIKALQE 354



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V ++ +FGAF+   G  DGLVHISQ+S E VAK SD ++ G  V  K++  D + 
Sbjct: 198 VVTGKVARLTNFGAFIDL-GGVDGLVHISQISHEHVAKASDKLEVGQEVQAKVISVDPES 256

Query: 681 GKIKLSMKVVDQNTGKPI 698
           G++ LS+K         I
Sbjct: 257 GRVSLSIKDTLAGPWDNI 274


>gi|184154694|ref|YP_001843034.1| RNA binding protein [Lactobacillus fermentum IFO 3956]
 gi|227514334|ref|ZP_03944383.1| RNA-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|260663743|ref|ZP_05864631.1| RNA binding protein [Lactobacillus fermentum 28-3-CHN]
 gi|183226038|dbj|BAG26554.1| RNA binding protein [Lactobacillus fermentum IFO 3956]
 gi|227087306|gb|EEI22618.1| RNA-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|260551794|gb|EEX24910.1| RNA binding protein [Lactobacillus fermentum 28-3-CHN]
          Length = 168

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E      G V  + +FGAF+     + GLVHISQ+S + +    DV+  GD V VK++  
Sbjct: 4   EEGAKVSGTVSGITNFGAFIDLADNKTGLVHISQVSDKFIKDIHDVLTVGDKVMVKVMKI 63

Query: 678 DDRGKIKLSMKV 689
           +  GKI LSMK 
Sbjct: 64  EGNGKIALSMKQ 75


>gi|182419749|ref|ZP_02950989.1| putative 30S ribosomal protein [Clostridium butyricum 5521]
 gi|237666935|ref|ZP_04526920.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376297|gb|EDT73879.1| putative 30S ribosomal protein [Clostridium butyricum 5521]
 gi|237658134|gb|EEP55689.1| ribosomal protein S1 [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 383

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+E     +       + +G+VV++  FGAFV      +GLVHI++++ E +AK SDV++
Sbjct: 268 AKEPWSVHSGEINEGDVIEGKVVRLTSFGAFVELFDGVEGLVHITEITDENIAKPSDVLQ 327

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
               V VK+L  D +  K+ LS+K   +N+ +
Sbjct: 328 LNQKVKVKVLSIDRESKKMSLSIKDAVENSKE 359



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 14/184 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
           +  +  A +      + I  E+   L+     L  F P            R  I +   V
Sbjct: 101 KENIKDAFKNGNIVSVKIKEEIKGGLAAYYGNLRVFIPGSLA-------SRERIELSTLV 153

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLA-EIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
            + I      K+   D    KI +S    E E   +  + I +  +  +   G V K++ 
Sbjct: 154 GKEI----DVKITELDLNNNKIVASRRVIEEEEYNKNKKVIWNSLQEGEKRTGVVKKLVK 209

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV   G  +GL+H+S LS ERV K  ++VKEGD V V +   D ++ ++ L +K + 
Sbjct: 210 FGAFVDI-GGVEGLIHLSDLSWERVNKPEEIVKEGDKVEVFIGSVDKEKERLSLILKDIA 268

Query: 692 QNTG 695
           +   
Sbjct: 269 KEPW 272



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679
            I KG V+ V D    V+   A DGL+   ++S++      DVV  GD + V ++   D 
Sbjct: 26  DILKGTVIDVNDKEVSVNINYAFDGLISKEEVSSDE-KDPRDVVAIGDEIEVYVISPNDG 84

Query: 680 RGKIKLSMKVVDQNTGKP 697
            G ++LS+K   Q   K 
Sbjct: 85  DGYVELSLKRSKQIKEKE 102


>gi|67459163|ref|YP_246787.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
 gi|75536405|sp|Q4ULF1|RS1_RICFE RecName: Full=30S ribosomal protein S1
 gi|67004696|gb|AAY61622.1| 30S ribosomal protein S1 [Rickettsia felis URRWXCal2]
          Length = 568

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+  V   +        AR+ + S         + +G V  + D+GAF+   G+ DGL+H
Sbjct: 177 DNIVVSRRAILEESRSEARDEMLSKIKE---GMVLEGTVKNITDYGAFIDL-GSVDGLLH 232

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           ++ +S  RV   S+V++    V V ++ FD++  +I L +K +D N  + I
Sbjct: 233 LTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAI 283



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAIKEEFPVGKKMTGKVTNFADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K +D++   K+GD +  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K +  N  + I
Sbjct: 434 AINIEKEQVSLGVKQLSPNPYQEI 457


>gi|27382391|ref|NP_773920.1| hypothetical protein bll7280 [Bradyrhizobium japonicum USDA 110]
 gi|27355562|dbj|BAC52545.1| bll7280 [Bradyrhizobium japonicum USDA 110]
          Length = 786

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 21/165 (12%)

Query: 547 GEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
            E  P V  + A     I+ +IG        IV     K  +D+   +   +  L E+E 
Sbjct: 578 PEAYPVVRRILAATKSDIKALIGSS-----EIVRTLKPKDFVDETFGLPTVTDILRELEK 632

Query: 606 A-------------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                         +E +  I  + +   I +G V  V  FGAFV     +DGLVHIS +
Sbjct: 633 PGRDPRPAFKAAVFKEGVEEIKHLQKG-MILEGTVTNVAAFGAFVDIGVHQDGLVHISAM 691

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           S   +    +VVK GD V VK+LDF+  R +I L++++ D+   K
Sbjct: 692 SKTFIKDPREVVKPGDIVKVKVLDFEVARKRISLTLRLDDEVGAK 736


>gi|256545379|ref|ZP_05472742.1| S1 RNA binding domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256398940|gb|EEU12554.1| S1 RNA binding domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 696

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 11/136 (8%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  ++  + + +G   ++ I+E+   K   D    +    +    +           D  
Sbjct: 570 IDLEKCADELEVGVLTLKDIIEEL-KKPGRDPRDELPEVVTKSEILS---------IDDL 619

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               I +G V  + +FG FV      DGLVHIS +S + +   +++V   D + VK+++ 
Sbjct: 620 NEGDILEGTVRNITEFGCFVDIGVGIDGLVHISNMSDKFIKDPNEIVTNSDIIKVKVIEI 679

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I LSMK + +
Sbjct: 680 DKKRERIGLSMKNLKE 695


>gi|325971203|ref|YP_004247394.1| RNA binding S1 domain protein [Spirochaeta sp. Buddy]
 gi|324026441|gb|ADY13200.1| RNA binding S1 domain protein [Spirochaeta sp. Buddy]
          Length = 571

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +NID +        +L+      +   +      V    K  V K+  FGAF+      +
Sbjct: 254 INIDPE----TQKINLSLKHMQEDPWTTFEQKYNVGDTIKAPVTKITTFGAFIEIEPGIE 309

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GL HIS+LS  +RV    +V+  GD V  K+L +D D+ ++ L +K +++N    IV
Sbjct: 310 GLAHISELSWTKRVNNPKEVLDVGDVVEAKVLGYDLDKKRVSLGLKQLEENPWDTIV 366



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 19/182 (10%)

Query: 522 QQAKRGRLHILNEMSKVLSES-----RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           + A   R  IL +  KV+          +   F P  +   +  ++   +IG+    I  
Sbjct: 105 KAASENRSPILGKFEKVIKGGFEVDLGGEYKGFCPLSKADVVRVEEPETLIGVTDYFI-- 162

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEI--EAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
                   ++    GT   +  +  E   +  +E         ++  + +G V     FG
Sbjct: 163 --------IDKFHGGTKLKSVVNRREYLDQKIKENKEKFFSTVQIGDVVEGVVKSFTSFG 214

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AF+   G  DGL+HI+ +S   V +  D VK+G  V ++L++ D +  KI LS+K + ++
Sbjct: 215 AFIDLGGF-DGLLHINDMSWGHVTRPKDFVKKGQVVQLRLINIDPETQKINLSLKHMQED 273

Query: 694 TG 695
             
Sbjct: 274 PW 275



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 22/185 (11%)

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAKV----- 585
             +  +      +     + +  P  +I        I  G + +  I E +  K      
Sbjct: 268 KHMQEDPWTTFEQKYNVGDTIKAPVTKITTFGAFIEIEPGIEGLAHISELSWTKRVNNPK 327

Query: 586 NIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            + D G V  A     +++  R              +I D   V       VVK+ + GA
Sbjct: 328 EVLDVGDVVEAKVLGYDLDKKRVSLGLKQLEENPWDTIVDRYPVGMTLSKPVVKITNSGA 387

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV+     DG +HI  +S  ++V   +    EGD + V ++  + +  +I+L +K ++ N
Sbjct: 388 FVNLEEGIDGFLHIDDISWTKKVKNMASFCAEGDVIEVVVIRVEPENRRIRLGVKQLEGN 447

Query: 694 TGKPI 698
             + +
Sbjct: 448 PWQTL 452



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK--- 665
             +++           G +  V DFG FV   G  +GL+    L       T +++K   
Sbjct: 448 PWQTLRHDYPKFSTISGVITNVTDFGVFVKVIGDIEGLISKYNLVGPDEEYTDEILKKFV 507

Query: 666 EGDTVWVKLLDFDDRG-KIKLSMKV 689
            G+ +   +++ +    K+ LS+K 
Sbjct: 508 VGEPITAMVVECNPTTQKLSLSVKE 532


>gi|171910224|ref|ZP_02925694.1| 30S ribosomal protein S1 [Verrucomicrobium spinosum DSM 4136]
          Length = 557

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +I  IPP  +   +G        + E    KVN D+   + ++   + E E 
Sbjct: 120 VEAFLPGSQIDIIPPRDLNEYVGK-------VYEFKIVKVN-DERKNIVLSRREVIEAER 171

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +  + +  V   +K+ +G V  + DFG FV      DGL+HI+ ++  R+   S++V 
Sbjct: 172 AEQRQKFLESVKPGDKV-EGIVKNITDFGVFVDL-NGMDGLLHITDMTWGRLNHPSELVA 229

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G  + V++L+ + ++ ++ L +K +  N  + I
Sbjct: 230 IGQKLNVQILEVNREKERVSLGLKQMQSNPWESI 263



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I    +V  + KG+V K+  FGAFV      DGLVHISQLS + V +  DV+  G
Sbjct: 432 DPWSEIDTRFKVGDLVKGRVAKIASFGAFVELEDDIDGLVHISQLSEDHVNRVKDVLNVG 491

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691
           D V  +++  D    +I LS+K V+
Sbjct: 492 DEVEARVIKVDKVERRIGLSVKAVN 516



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
              +I +   +    KG+V  +  +GAFV      DG++H+S LS  R +   S+V+K+G
Sbjct: 346 PWDNIDERFPIGTKMKGKVRNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVLKKG 405

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
             V   +L+ D    +I L +K ++ +    I
Sbjct: 406 QEVEATILEIDKANQRISLGIKQLEGDPWSEI 437



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              SI +   V +   G V K++ +GAFV      +GL+H+S+LS  +R+A+ SDV+  G
Sbjct: 259 PWESIENRYPVGQRVHGTVTKLVAYGAFVEVEEGVEGLIHVSELSWTKRIARPSDVLTVG 318

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             V  ++L  + +  KI L ++ +D N    I
Sbjct: 319 QKVDAQVLGINKEERKISLGVRQLDTNPWDNI 350


>gi|148225756|ref|NP_001085888.1| MGC80994 protein [Xenopus laevis]
 gi|49118496|gb|AAH73477.1| MGC80994 protein [Xenopus laevis]
          Length = 793

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKT 660
             + + R   + P +  IY G+V  +M FG FV   G R   +GLVHIS+L  E RVA  
Sbjct: 206 KEKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANV 265

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +DVV +G  V +K+L F    K  LSMK V+Q+TG+ +
Sbjct: 266 ADVVSKGQRVKIKVLSFTGC-KTSLSMKDVNQDTGEDL 302


>gi|255026108|ref|ZP_05298094.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-003]
          Length = 381

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    + T   + ID +      S               IT+  +V  + +G+VV+++
Sbjct: 229 EVLEEGQKVTVKVIGIDPENERISLSIKATLPG----PWDGITEKAQVGSVLEGKVVRLV 284

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ ++   ++ LS+K +
Sbjct: 285 TFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEADKRLSLSIKEL 344

Query: 691 DQNTGKP 697
                + 
Sbjct: 345 QDAPVEE 351



 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   +V++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIKATLPGPW 263



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V   G++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDILV-LSKRKVDAE 89


>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 388

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D +    I S      E A    +         ++  G V ++  FG FV   G  D
Sbjct: 154 VELDRERNKLILSQRAVLDEEALNQKKETLHSISAGEVVSGTVQRITSFGVFVDI-GGVD 212

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GLVHISQLS E +   S+VV EGD V VK+L  D D  +I LS+K       +
Sbjct: 213 GLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIKETMPGPWE 265



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               + +   V  +  G+V +++ FGAFV      +GLVHISQ++   +    +V+KEG+
Sbjct: 263 PWEGVEEQFSVGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGE 322

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V  K+LD + D  +I LS++ +++ T +
Sbjct: 323 EVSAKILDINLDDKRISLSIRALEEETQE 351



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +        +  +   V  + KG V KV D  A+V+     DG+V IS+L++  V K  D
Sbjct: 1   MVEEMNNEMADFNSLSVGDVTKGTVSKVEDKQAYVNVGYKMDGVVPISELASLHVEKAGD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVV-DQNTGKPIV 699
           V+ EG+    K++   +   + LS + V  + T + + 
Sbjct: 61  VINEGEEYEFKVIKLTEDELV-LSRRAVAAEKTWENMA 97


>gi|167759011|ref|ZP_02431138.1| hypothetical protein CLOSCI_01358 [Clostridium scindens ATCC 35704]
 gi|167663418|gb|EDS07548.1| hypothetical protein CLOSCI_01358 [Clostridium scindens ATCC 35704]
          Length = 373

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  D   V K+ +G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G 
Sbjct: 266 PWANAADDFAVGKVIEGKVARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLSVGQ 325

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            +  K++D ++   KI LSMK ++    +
Sbjct: 326 VITAKIVDLNESEKKISLSMKALEPANEE 354



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   LS    +   F P      +     +++     + I
Sbjct: 98  ERLKEAYENHEVLKAPVAQILGGGLSVVIDEARVFIPASL---VSDTYEKDLSKYQDQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E  + +    +V    +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAERAEKQKELFARLQVGDRMEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V + G+ V V + D +D  KI LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVENPKKVFQVGEKVEVLIKDINDT-KIALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  S+ + E  A  + +V  G
Sbjct: 8   QMLEESFKTIRNGEVVDGTVIDVKPDEIILNIGYKADGIITRSEYTNEANADLTTMVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K+L   D  G++ L+ K +    G
Sbjct: 68  DEMTAKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|89892944|ref|YP_516431.1| hypothetical protein DSY0198 [Desulfitobacterium hafniense Y51]
 gi|219666211|ref|YP_002456646.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
 gi|89332392|dbj|BAE81987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536471|gb|ACL18210.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 128

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 44/76 (57%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  + +FGAFV       GLVHIS+++   V    D +KE D V VK++  D
Sbjct: 5   VGTIVEGVVTGITNFGAFVELPEKVTGLVHISEVADAYVKDVRDYLKEQDRVKVKVIHVD 64

Query: 679 DRGKIKLSMKVVDQNT 694
           ++GKI LS+K  + + 
Sbjct: 65  EKGKIGLSIKQANPSP 80


>gi|319956088|ref|YP_004167351.1| SSU ribosomal protein s1p [Nitratifractor salsuginis DSM 16511]
 gi|319418492|gb|ADV45602.1| SSU ribosomal protein S1P [Nitratifractor salsuginis DSM 16511]
          Length = 556

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +        V  I  G V  V DFGAFV   G  +GL+H  + S ++  +  D+   G
Sbjct: 359 KPMEEFAQKHRVGDIVTGTVSSVTDFGAFVRLDGGVEGLLHNQEASWDKSKRAKDLFNVG 418

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V VK++  D D GKI LS K ++++ 
Sbjct: 419 DEVEVKIIKIDTDAGKISLSKKALEKSP 446



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D   K    SL+  EA  +   +I ++  V       V  +  +G FV      +  +H+
Sbjct: 254 DYDKKKRHLSLSIKEANPDPWENIDEILGVGDTVTATVSNIEPYGVFVDLGEDLEAFLHV 313

Query: 650 SQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           S++S ++ V    D +  GD + V++++ D ++ ++++S K +     + 
Sbjct: 314 SEISWDKNVKHPKDFLNVGDEIDVEVIEIDREKRRLRVSRKSLLPKPMEE 363



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G+V I+   L E + AR +   +  + E  +   G V K+  +G FV   G  DGLVH
Sbjct: 169 DKGSVVISRKELIERDKAR-VNEIVEKLLESKEPVVGTVKKITSYGMFVDVGGM-DGLVH 226

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            SQ+S +     S   +EGD V V  LD+D + + + LS+K  + +  + I
Sbjct: 227 YSQISHKGPVNPSKYYQEGDEVNVVALDYDKKKRHLSLSIKEANPDPWENI 277



 Score = 44.1 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 15/129 (11%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
              +    +   G  +   +     K++  D G + ++  +L      +  + +  +  +
Sbjct: 406 DKSKRAKDLFNVGDEVEVKI----IKIDT-DAGKISLSKKALE-----KSPVETFAEEHK 455

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G V    DFG F+      D L+    L+        D ++ G  +   +   D
Sbjct: 456 VGDIVTGTVKDKKDFGVFIALDDNVDALIRTEDLAPLNF----DEIERGQEIKGVITHID 511

Query: 679 DRG-KIKLS 686
            R  +I++S
Sbjct: 512 PRNDRIRVS 520


>gi|262195845|ref|YP_003267054.1| Tex-like protein protein-like protein [Haliangium ochraceum DSM
           14365]
 gi|262079192|gb|ACY15161.1| Tex-like protein protein-like protein [Haliangium ochraceum DSM
           14365]
          Length = 801

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 13/123 (10%)

Query: 568 GMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G+G   +R IV++      +  D+         +  +E            PE+    +G 
Sbjct: 612 GVGEPTLRDIVDELKKPGRDPRDEFEPPRFRDDVNTLE---------DLKPEMQ--LEGV 660

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  V DFGAFV     +DGLVHISQLS   V    +VVK GD + V++LD D  R +I L
Sbjct: 661 VTNVTDFGAFVDVGVHQDGLVHISQLSDRFVKDPREVVKVGDKIKVRVLDVDLARKRIAL 720

Query: 686 SMK 688
           S +
Sbjct: 721 SAR 723


>gi|194334594|ref|YP_002016454.1| 30S ribosomal protein S1 [Prosthecochloris aestuarii DSM 271]
 gi|194312412|gb|ACF46807.1| RNA binding S1 domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 588

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +R+   + G+ +   V     K+N      V      L E  AA+     +   
Sbjct: 161 QIDVKPVRDFDALVGQTMDFRV----VKINPVTQNIVVSHKVILEEEYAAK--REEMLAN 214

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV+    + V ++ 
Sbjct: 215 IKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVVVG 273

Query: 677 FDDR-GKIKLSMKVVDQNTGKPI 698
           FD+   ++ L MK ++ +  + I
Sbjct: 274 FDEDTKRVSLGMKQLEPHPWENI 296



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +I     V     G+VV + D+GAFV      +GLVHIS++S  + +   S  V  
Sbjct: 291 HPWENIEIKYPVGTKTNGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSL 350

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V V +L+ D D  K+ LSMK V ++  
Sbjct: 351 GQEVEVVILNIDKDHTKLSLSMKRVTEDPW 380



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++++      ++KG V  + DFG FV      DGLVHIS LS  +++   S++VK+
Sbjct: 378 DPWIALSEKYIEASLHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKK 437

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              + VK+L FD +  +I L  K ++ +    
Sbjct: 438 NQDLEVKVLKFDVNARRIALGHKQINPDPWDE 469



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G++ ++++ G  V   G  DG V +S L    V       K GD + +++++FD +  +I
Sbjct: 482 GEISQIIEKGVIVILPGDVDGFVPVSHLLQGGVKDIHTSFKVGDALPLRVIEFDKENKRI 541

Query: 684 KLS 686
            LS
Sbjct: 542 ILS 544



 Score = 38.7 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAF 636
           +EQ     +   +  VK  +          E + S T +     +I KG++V + +    
Sbjct: 7   IEQPKVTESGHGNQRVKFFAEYELSELQQMEKLYSSTLNEITEEEIVKGRIVGISNKDVT 66

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           +      +G+V   +          D +K GD V V L +  D  G++ LS +  D
Sbjct: 67  IDVGYKSEGIVSKLEFRD------EDELKVGDEVEVYLENIEDKMGQLILSKRKAD 116


>gi|166157063|emb|CAO79520.1| 30S ribosomal protein S1 [uncultured candidate division WWE3
           bacterium EJ0ADIGA11YD11]
          Length = 414

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID +    + S   A    + E  +      ++    +G V  +M FG FV      +
Sbjct: 184 IEIDKEKNRFVLSEKDALATYSEESRKKRLSEIKIGSTVEGIVTGIMPFGVFVDL-DGVE 242

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           GLVHIS+++ E+V+  S+  K G  + V +L  D+   K+ LS+K +  N  + +
Sbjct: 243 GLVHISEIAWEKVSHPSNYFKVGQKIKVMVLGVDEESNKLALSVKKLIPNPWETV 297



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   V     G V K++ FGAFV      DGL+HIS+            +KEG+
Sbjct: 293 PWETVEEKYPVGTKVTGVVSKIVPFGAFVTLEKGLDGLIHISE--------AEAPLKEGE 344

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           TV   ++  D +  K+ LS +  + +  K  V
Sbjct: 345 TVSAVVIQVDGENQKLALSTREHNFDNEKDKV 376


>gi|299756328|ref|XP_001829254.2| ATP-dependent RNA helicase DHX8 [Coprinopsis cinerea okayama7#130]
 gi|298411627|gb|EAU92580.2| ATP-dependent RNA helicase DHX8 [Coprinopsis cinerea okayama7#130]
          Length = 1160

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQL-STERVAKTSDVVKEGDTVW 671
            P V KIY+G+V  + DFGAFV      G  +G+VH+S + +  R    +D++  G  V 
Sbjct: 197 RPVVFKIYEGKVAGIKDFGAFVQLEGVAGRVEGMVHVSNIQAGARANSAADLLSRGQRVK 256

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           VK++     G+I LSMK VDQ TG+ +
Sbjct: 257 VKVMSVAG-GRIGLSMKDVDQVTGRDL 282


>gi|254674298|emb|CBA10082.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha275]
          Length = 88

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 617 PEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            EV K+Y+G VVK++D   GA V     +DGLVHISQ++ ERV    D ++ G  V VK 
Sbjct: 1   MEVAKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKA 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L+ DDRG+++LS+K +     + 
Sbjct: 61  LEVDDRGRVRLSIKALLDAPARE 83


>gi|315499365|ref|YP_004088169.1| ribosomal protein s1 [Asticcacaulis excentricus CB 48]
 gi|315417377|gb|ADU14018.1| ribosomal protein S1 [Asticcacaulis excentricus CB 48]
          Length = 562

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEEARAEQRTELVGQLAEG-EIRDGVVKNITDYGAFVDL-GGIDGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV+  S V+  GD+V V+++  + D  +I L MK +  +  
Sbjct: 226 DMSWKRVSHPSQVLNVGDSVRVQIIKINPDTQRISLGMKQLQSDPW 271



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A             +  + +G+V    +FG FV F    DG+VH+S L    VA    +
Sbjct: 352 QAQNNPWDDFLSKHPIGSVIEGEVKNATEFGLFVGFENDIDGMVHLSDLDWN-VAGEEAI 410

Query: 664 --VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              K+GD V  K+LD D ++ +I L +K +  + 
Sbjct: 411 AKYKKGDIVKTKVLDVDVEKERISLGIKQLGGDP 444



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G++  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 269 DPWDGVEAKYPVGGKFTGRITNITDYGAFVELESGVEGLVHVSEMSWTKKNVHPGKIVST 328

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              V V +L+ D  + ++ L +K    N    
Sbjct: 329 SQEVDVVVLEVDAGKRRVSLGLKQAQNNPWDD 360



 Score = 37.2 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           F          +  S LS +R  +  +    GD V  ++ + D    K+ +S+K ++
Sbjct: 472 FGEDDAQVSAFIRKSDLSRDRNEQRVERFAVGDRVDAQITNVDKAARKVSVSIKALE 528


>gi|226227195|ref|YP_002761301.1| 30S ribosomal protein S1 [Gemmatimonas aurantiaca T-27]
 gi|226090386|dbj|BAH38831.1| 30S ribosomal protein S1 [Gemmatimonas aurantiaca T-27]
          Length = 585

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 8/272 (2%)

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           SD    M  +   +LA ++ G  +   V  I   LV     F     I  +E     M  
Sbjct: 43  SDEYERMLELYNGTLASIEEGEIVKAHVLEIRENLVVLDIGFKSEGTIPLEE--FKDMPD 100

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
             AG +  +    ++ + G +  +       +              V      ++     
Sbjct: 101 LKAGDEVEVLLEHLEDQEGSVVLSKKKADFMRVWERIRVAYESDQPVEGTLVKKIKGGV- 159

Query: 552 RVEIMAIPPDQIRNVIGMGG--KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            V++M +      + I +     +   + ++   K+   +     I  S    +E  R  
Sbjct: 160 VVDLMGVDAFLPGSQIALRRVPNIDELLGQKYEFKIIKLNKRRRNIVVSRRVILETERAG 219

Query: 610 IRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            R         +++ KG V  + DFGAF+   G  DGL+HI+ +S  R++  S++V+ G 
Sbjct: 220 KREKLMKELAKDQVRKGVVKNITDFGAFIDL-GGVDGLLHITDMSWGRISHPSEMVQIGM 278

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            + +K+LD D +R +I L +K +     K + 
Sbjct: 279 ELEIKVLDIDWERERISLGLKQLQSYPWKDVA 310



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P +I + IG   + +   V++T  K+++              +       +      P 
Sbjct: 356 HPSKIVS-IGEAIEAVVLKVDETEEKISL------------GMKQTEQDPWVILPLKYPV 402

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677
             +I  G+V  +  FGAFV      DGL+HIS +S  +RV   S+VVK+GD V V +L+ 
Sbjct: 403 GTRI-NGKVRNLTSFGAFVEIEPGIDGLIHISDMSWTKRVQHPSEVVKKGDAVDVVILNI 461

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +  +I L +K  +++  
Sbjct: 462 DSENKRISLGLKQAEEDPW 480



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 84/214 (39%), Gaps = 13/214 (6%)

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           +      +  I  +    +   +S  +++   +  KR +L       +V       + +F
Sbjct: 185 ELLGQKYEFKIIKLNKRRRNIVVSRRVILETERAGKREKLMKELAKDQVRKGVVKNITDF 244

Query: 550 TPRVEIMAIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEI 603
              +++  +       D     I    ++++  +E     ++ID +   + +    L   
Sbjct: 245 GAFIDLGGVDGLLHITDMSWGRISHPSEMVQIGMELEIKVLDIDWERERISLGLKQLQSY 304

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSD 662
                  + +     V     G+VV + ++GAF+      +GLVHIS++S  R V   S 
Sbjct: 305 -----PWKDVAAKYPVGTRVSGKVVSITNYGAFIELEPGIEGLVHISEMSWTRNVRHPSK 359

Query: 663 VVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           +V  G+ +   +L  D+   KI L MK  +Q+  
Sbjct: 360 IVSIGEAIEAVVLKVDETEEKISLGMKQTEQDPW 393


>gi|91775280|ref|YP_545036.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91775424|ref|YP_545180.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91709267|gb|ABE49195.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
 gi|91709411|gb|ABE49339.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
          Length = 569

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 11/183 (6%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIPPDQIRNVIGMGGKVIRGIVEQT 581
           + K  RL    E+ + ++ESR+  G    RV+  + +  + IR  +      +R + + T
Sbjct: 95  REKAKRLAAWQELEEAMNESRIIKGMVNGRVKGGLTVMVNSIRAFLPGSLVDLRPVKDTT 154

Query: 582 --------GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                      + +D      + S      E       ++ +  +   + KG V  + D+
Sbjct: 155 PFENKEWDFKVIKLDRKRNNVVVSRRAVLEETMGADREALLESLKEGAVVKGIVKNITDY 214

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  DGL+HI+ L+  RV   S+V+  G+ V  K+L FD ++ ++ L +K +  
Sbjct: 215 GAFVDL-GGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILKFDQEKNRVSLGIKQLGD 273

Query: 693 NTG 695
           +  
Sbjct: 274 DPW 276



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + + + GD V V +L+ D DR +
Sbjct: 291 GKVTNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRR 350

Query: 683 IKLSMKVVDQNTGKP 697
           + L MK    N    
Sbjct: 351 LSLGMKQCQANPWDD 365



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T + +   I KG V  +   GA +      +G +  S++S ++V   S V+KEG
Sbjct: 448 DPFSAYTALNDKGAIVKGTVKSIEAKGAVIALDNEVEGYLRASEVSRDKVDDISTVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D +  ++ + D + + I LS+K  D
Sbjct: 508 DEIEARITNIDRKNRSIALSIKAKD 532



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +I  +   G +V   I+E       ID+D           +               
Sbjct: 325 VHPAKIAQL---GDEVEVMILE-------IDEDRRRLSLGMKQCQAN----PWDDFAATH 370

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +      GQ+  + DFG F+   G  DGLVH+S LS  +   +     K+GD +   +L 
Sbjct: 371 KKGDKVSGQIKSITDFGVFIGLPGGIDGLVHLSDLSWNQPGEEAIRNFKKGDELEAVVLS 430

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D ++ +I L +K +D + 
Sbjct: 431 IDVEKERISLGVKQLDSDP 449


>gi|222528668|ref|YP_002572550.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455515|gb|ACM59777.1| RNA binding S1 domain protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 120

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  +I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++ 
Sbjct: 4   KRGQILEGIVKGITQFGAFVELPSGKVGLVHISEVADEYVEDIKKYLKENQTVKVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            + GKI LS+K V++ T + 
Sbjct: 64  KEDGKISLSIKRVNETTKRE 83


>gi|134045501|ref|YP_001096987.1| RNA-binding S1 domain-containing protein [Methanococcus maripaludis
           C5]
 gi|132663126|gb|ABO34772.1| RNA binding S1 domain protein [Methanococcus maripaludis C5]
          Length = 713

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            I  +++   +  G   +  I+++      +  +D    +  S + E+E  +E       
Sbjct: 588 KIDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKE------- 640

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 I KG V  ++DFGAF+      DGL HIS+++   +    DV+  GD V V ++
Sbjct: 641 ----GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVM 696

Query: 676 DFD-DRGKIKLSMK 688
           D D D+ ++ LS+K
Sbjct: 697 DIDFDKKRVSLSIK 710


>gi|332530544|ref|ZP_08406482.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624]
 gi|332039990|gb|EGI76378.1| RNA binding S1 domain protein [Hylemonella gracilis ATCC 19624]
          Length = 796

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+SQLS + V    +VVK GD V VK+L+ D  
Sbjct: 676 MVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDIVKVKVLEVDLA 735

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L+MK +D    +P
Sbjct: 736 RQRISLTMK-LDAAVARP 752


>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome component 5-like [Bos taurus]
 gi|297485653|ref|XP_002695041.1| PREDICTED: exosome component 5-like [Bos taurus]
 gi|296477725|gb|DAA19840.1| exosome component 5-like [Bos taurus]
          Length = 242

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 31/241 (12%)

Query: 305 TVMLDKKVRMDGRDSE-------TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
            +  + K+R D            ++R  + +  LL R  GS+ F++GDT  +  V  G  
Sbjct: 4   EMQTESKIRADSGTEPGPRVPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPA 62

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
           E                   +N          + G P   E    RL R     V+    
Sbjct: 63  EV------------KISKEIFNKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGAL 110

Query: 418 QFPYTLRIVSEITESDGS-------SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
               ++ +V ++    GS            +  + +AL+DAGVP+     G+   L  DG
Sbjct: 111 HPRTSITVVLQVVSDAGSKLNHCLWLLACCLNAACMALVDAGVPMRALFCGVTCALDSDG 170

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
               ++ D +  ++         A  DS    + M    G  S+  +   L  A+    H
Sbjct: 171 ---TLMLDPTAKQEKEARAVLTFA-LDSVERKLLMSTTKGLYSDTELQQCLAAAQTASTH 226

Query: 531 I 531
           +
Sbjct: 227 V 227



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 27/156 (17%)

Query: 28  DGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T VLA V     +   K+  +   L V  + +T                P
Sbjct: 42  DGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKT--------------GLP 87

Query: 85  TENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPH------VVSMVAASA 136
              E    R+I  +   +       +    V++ V+  D  S  +         + AA  
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVS-DAGSKLNHCLWLLACCLNAACM 146

Query: 137 ALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQ 171
           AL+ +G+P      G       +G  +L+P   +++
Sbjct: 147 ALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEK 182


>gi|228912986|ref|ZP_04076629.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228846661|gb|EEM91670.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 722

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQPQLQKSLEE------------VEISKLSEETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +     +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 667 IDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|225572946|ref|ZP_03781701.1| hypothetical protein RUMHYD_01137 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039692|gb|EEG49938.1| hypothetical protein RUMHYD_01137 [Blautia hydrogenotrophica DSM
           10507]
          Length = 717

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVP 617
              ++   +G+G   +  IV++             K A     E+               
Sbjct: 595 NTKKMAQELGVGEITLEDIVKELE-----------KPARDPRDEMPRPILRTDVLEMKDL 643

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  V+DFGAFV     +DGLVHIS+++   +    + V  GD V VK++  
Sbjct: 644 EEGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISKMTKRYIKHPLEAVSVGDVVEVKVISV 703

Query: 678 D-DRGKIKLSM 687
           D  + +I LSM
Sbjct: 704 DLQKKRIGLSM 714


>gi|195149686|ref|XP_002015787.1| GL11247 [Drosophila persimilis]
 gi|194109634|gb|EDW31677.1| GL11247 [Drosophila persimilis]
          Length = 1152

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVKEGD 668
           + D PE  KIY G+V  ++ FG FV   G R   +GLVHISQL +  RV   ++VV    
Sbjct: 188 MADDPEAGKIYSGKVANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVARNQ 247

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           TV VK++    + K+ LSMK VDQ +G+ +
Sbjct: 248 TVRVKVMSLTGQ-KVSLSMKEVDQESGRDL 276


>gi|154684582|ref|YP_001419743.1| hypothetical protein RBAM_000720 [Bacillus amyloliquefaciens FZB42]
 gi|308171954|ref|YP_003918659.1| polyribonucleotide nucleotidyltransferase or phosphorylase
           [Bacillus amyloliquefaciens DSM 7]
 gi|311070710|ref|YP_003975633.1| hypothetical protein BATR1942_18925 [Bacillus atrophaeus 1942]
 gi|154350433|gb|ABS72512.1| YabR [Bacillus amyloliquefaciens FZB42]
 gi|307604818|emb|CBI41189.1| putative RNA degradation protein; polyribonucleotide
           nucleotidyltransferase or phosphorylase [Bacillus
           amyloliquefaciens DSM 7]
 gi|310871227|gb|ADP34702.1| hypothetical protein BATR1942_18925 [Bacillus atrophaeus 1942]
 gi|328551764|gb|AEB22256.1| hypothetical protein BAMTA208_00320 [Bacillus amyloliquefaciens
           TA208]
 gi|328910024|gb|AEB61620.1| hypothetical protein LL3_00065 [Bacillus amyloliquefaciens LL3]
          Length = 128

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G++  + +FGAFV   G   GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINEHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSM-KVVDQNTGKP 697
           +  GKI LS+ K  D+   +P
Sbjct: 64  EKDGKIGLSIKKAKDRPQARP 84


>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
          Length = 227

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 14/222 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR+ + +R+I  ++ +     GS L+ +G T+ I +V        Q   +   TQ 
Sbjct: 4   KRQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLV--------QGPRA--KTQS 53

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
              ++ Y+  P +  E  R     +         + +   ++         + I   + +
Sbjct: 54  ELLLIEYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQ 113

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DGSS  A     +LAL+DAGV +   +  + +GL    D   ++ D++ +E      + 
Sbjct: 114 NDGSSKSAVFNAITLALLDAGVSMKDFLVSVTVGL----DQGNLIVDLTQEESKTAQGEL 169

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            ++           ++K   + +  M    + A      I  
Sbjct: 170 TISYQSRKQKIDFYELKTLKLQQQEMDQLSKLAVSKADEIYQ 211


>gi|71898476|ref|ZP_00680648.1| RNA binding S1 [Xylella fastidiosa Ann-1]
 gi|71731789|gb|EAO33848.1| RNA binding S1 [Xylella fastidiosa Ann-1]
          Length = 772

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGL+HIS L+   V    D+VK GD V VK+L+ D  R
Sbjct: 657 ILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVKAGDIVKVKVLEIDVPR 716

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L+ ++ ++   +
Sbjct: 717 KRIALTCRLHEETPPE 732


>gi|224825246|ref|ZP_03698352.1| RNA binding S1 domain protein [Lutiella nitroferrum 2002]
 gi|224602917|gb|EEG09094.1| RNA binding S1 domain protein [Lutiella nitroferrum 2002]
          Length = 767

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS LS + +     VVK GD V VK+ + D  
Sbjct: 653 MVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSNKFIDDPRKVVKAGDVVKVKVQEVDVK 712

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 713 RRRIALTMRLDDE 725


>gi|269469082|gb|EEZ80635.1| ribosomal protein S1 [uncultured SUP05 cluster bacterium]
          Length = 558

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 19/198 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  ++ E +    E+ L+  E    +E +          + +GG     
Sbjct: 159 MDEVRNNIVISRKAVMQEANSADREALLETLEEGKEIEGIVKNLADYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE--------AAREMIRSITDVPEVN 620
               +    V     K+ I D  TVK+ +    ++          A         +P   
Sbjct: 219 HITDISWTRVNHPSEKLTIGDKITVKVLNYDKEKMRVSLGLKQLTASPWDNISDRLPIGK 278

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDD 679
           K+  G V  + D+GAFV      +GLVH+S++      A+ S +VK G  V V +LD  +
Sbjct: 279 KV-TGTVSNLTDYGAFVRIEDGVEGLVHVSEMDWTNANARPSKIVKLGQEVDVVVLDVQE 337

Query: 680 -RGKIKLSMKVVDQNTGK 696
            + +I LSMK   +N  +
Sbjct: 338 SKHRISLSMKQALENPWE 355



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 2/140 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +         E     + +D+     + S      EA      ++ +  E 
Sbjct: 132 PGSLVDVRPVKDFSYLTGQEIEAIVIKMDEVRNNIVISRKAVMQEANSADREALLETLEE 191

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            K  +G V  + D+GAFV   G  DGL+HI+ +S  RV   S+ +  GD + VK+L++D 
Sbjct: 192 GKEIEGIVKNLADYGAFVDL-GGVDGLLHITDISWTRVNHPSEKLTIGDKITVKVLNYDK 250

Query: 679 DRGKIKLSMKVVDQNTGKPI 698
           ++ ++ L +K +  +    I
Sbjct: 251 EKMRVSLGLKQLTASPWDNI 270



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   S     +   I KG + +V   GA V       G +   ++S ERV   S V+K
Sbjct: 438 AEDDFMSYASSNKKGAIVKGVIAEVDSRGAVVTLADDITGYLKAGEISQERVEDASTVLK 497

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
            G  V V +   D R + I LS+K  D    K
Sbjct: 498 VGAEVEVVITQIDRRSRNISLSIKAKDSVEEK 529



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 602 EIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            ++ A E    +              V  + DFG FV   G  DGL+H++ +S E+ +  
Sbjct: 345 SMKQALENPWEAFEATQNKGDKIGVTVKSITDFGLFVGLPGGIDGLIHLADISWEKQSSE 404

Query: 661 SDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V    +G  + V +L+ D ++ +I L +K + ++
Sbjct: 405 ELVSNYSKGQELEVVILNIDAEKERISLGIKQLAED 440


>gi|114704383|ref|ZP_01437291.1| 30S ribosomal protein S1 [Fulvimarina pelagi HTCC2506]
 gi|114539168|gb|EAU42288.1| 30S ribosomal protein S1 [Fulvimarina pelagi HTCC2506]
          Length = 569

 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 11/185 (5%)

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           +  +A+R    I  E     +E +++   F        +  D     +      IR I +
Sbjct: 91  SRDKARREESWIRLEAKFNENE-KVEGQIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRD 149

Query: 580 QTGA-------KVNIDDDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVM 631
            T         ++   D     I  S    +E +R   RS      E  ++  G V  + 
Sbjct: 150 VTPLMNTPQPFQILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVDGIVKNIT 209

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+H++ ++  RV   +++++ G TV V+++  + +  +I L MK +
Sbjct: 210 DYGAFVDL-GGIDGLLHVTDMAWRRVNHPTEILQIGQTVKVQIIRINQETHRISLGMKQL 268

Query: 691 DQNTG 695
           + +  
Sbjct: 269 EADPW 273



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +      I +G+V    +FG F+   G  DG+VH+S L   R   +  +   
Sbjct: 357 QNPWDAFAEKFPTGAIVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFN 416

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V  ++LD D ++ +I L MK V  + 
Sbjct: 417 KGDLVKAQVLDVDVEKERISLGMKQVGGDP 446



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
             G+V  + D+GAFV      +GL+H+S++S  ++      ++     V V +L+ D ++
Sbjct: 286 VTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKILATSQEVEVVVLEVDPNK 345

Query: 681 GKIKLSMKVVDQNTG 695
            +I L +K   QN  
Sbjct: 346 RRISLGLKQTLQNPW 360



 Score = 44.5 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V +V D G  V          +  S L+ +R  +  +    G T+  ++  FD +
Sbjct: 461 VVSCEVTQVTDGGIEVKIVETDLTSFIRRSDLARDRDEQRPERFSVGQTIDARVTQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             K+ LS+K +     K  V
Sbjct: 521 ARKVGLSIKALQIAEEKEAV 540


>gi|331002422|ref|ZP_08325940.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410238|gb|EGG89672.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 368

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +  + V   G  V   I + +G K+ +               ++A  +  R        
Sbjct: 230 VENPKKVFKSGETVTAFIKDISGEKIALS-----MKFPDQNPWLDAEEKFARGN------ 278

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             + KG+V ++ DFGAFV      D L+H+SQ+S + V K SDV+K GD V   +++F++
Sbjct: 279 --VVKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNE 336

Query: 680 -RGKIKLSMKVVDQNTGK 696
              KI LS+K + Q   +
Sbjct: 337 ADKKISLSIKALTQANEE 354



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           R++       I  ++ +   K          I       +    E  +++ +      + 
Sbjct: 144 RDLSKYKDTEIEFVITEFNPKR------RRIIGDRKQLLVAKKEEQKKALFEKITPGDVI 197

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G V  V DFGAFV   GA DGL+HIS++S  RV     V K G+TV   + D     KI
Sbjct: 198 EGTVKNVTDFGAFVDLGGA-DGLLHISEMSWGRVENPKKVFKSGETVTAFIKDISGE-KI 255

Query: 684 KLSMKVVDQNTGKP 697
            LSMK  DQN    
Sbjct: 256 ALSMKFPDQNPWLD 269



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G+V+ V +    ++     DG++  S+ S +       VV  G
Sbjct: 8   QMLDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKSDGIITRSEYSNDNSLDLRTVVNVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K+L   D  G++ LS K + Q+ G
Sbjct: 68  DDMEAKVLKINDGEGQVLLSYKRLAQDRG 96


>gi|149177391|ref|ZP_01855995.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
 gi|148843724|gb|EDL58083.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
          Length = 572

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+ + + +   + + + G V  + D+GAFV   G  DG +HI ++S  R+    D + E 
Sbjct: 355 EIQKELWEKLAIGQEHTGTVKNIKDYGAFVDL-GGIDGFLHIGEISWNRIKHPKDALSEH 413

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             + VK+L  D ++ +I L MK + Q+  +
Sbjct: 414 QQINVKILKIDKEKNRISLGMKQLQQDPWQ 443



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            ++  +S  D         G+V +  DFGAF+      +GL+HIS+L   RV + ++V+ 
Sbjct: 438 QQDPWQSAEDRYATGSTISGKVTRTTDFGAFIELEPGLEGLIHISELDHRRVKRVTEVLT 497

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
            G     K+L+ D +R +I LS+K +
Sbjct: 498 TGQETSAKVLEVDPNRKRISLSIKAL 523


>gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 400

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE     + I+ +    I S   A +E        +    +   + +G V  V DFG FV
Sbjct: 188 VELPLKVIEINRNRNRLILSERQALVETRETKKDELLASLQEGDVREGVVSSVCDFGVFV 247

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              GA DGLVH+S++S  RV   S+V+K GD V V +L+ D +R +I LS+K       
Sbjct: 248 DIGGA-DGLVHLSEISWSRVKHPSEVLKVGDKVKVSILNIDHERKRIALSIKRTQSEPW 305



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    + +  ++ +I +G V ++  FGAFV      +GL+H+S++  ER+    DV+ EG
Sbjct: 303 EPWTRVAERYQLGQIVEGTVTQLASFGAFVRIEDGVEGLIHVSEMGDERIQHPRDVLSEG 362

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
             V  +++  D  R ++ LS++ + Q   +
Sbjct: 363 QVVQARIIRIDPARKRMGLSLR-LQQEPSE 391


>gi|282882121|ref|ZP_06290762.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
 gi|281298151|gb|EFA90606.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
          Length = 725

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDF 633
           + + +    ++   D    +I  S    +    E  RS       +  + +G V ++ +F
Sbjct: 419 KFVGDDFQCEIIDFDKRKRRIVLSRKNVLMRELEEKRSQIFESLHIGDVIEGTVQRLTNF 478

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQ 692
           GAFV   G  DGLVHIS+LS  RV   S+VV  GD V V++L  D+   +I L +K   +
Sbjct: 479 GAFVDI-GGIDGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEKDRIALGLKQTTE 537

Query: 693 NTG 695
              
Sbjct: 538 KPW 540



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            ++DFGAFV      DGL+H+SQ+  E + K  D ++ G  V VK+++ D +  KI LS+
Sbjct: 559 NILDFGAFVRLEEGVDGLLHVSQICREHIEKPQDRLEIGQEVEVKVIEIDQENKKISLSI 618

Query: 688 KVVDQN 693
           K + + 
Sbjct: 619 KALLEP 624



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 553 VEIMAIPPDQIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           ++ + I   +  N IG+  G      ++++  + +   D G          E+  A +  
Sbjct: 235 IKDIDINILKKFNKIGITAGASTPDKVIKEAVSSMENFDKG----------EMMEAIDN- 283

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  +  +I  G+V+ V D    V+     DG++   +LS    AK SD+ K+GD +
Sbjct: 284 --SFKRIKKGEIVTGEVLYVTDNEVMVNLGYRSDGIISKEELSKNTDAKPSDLYKQGDEI 341

Query: 671 WVKLLDFDD-RGKIKLSMKVVD 691
            V +L  DD  G + LS + V+
Sbjct: 342 EVFVLKMDDGDGNVVLSARRVE 363



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +E    K++ D DG V +++  + +++   E+  S  +    ++I   +V+  +  G   
Sbjct: 341 IEVFVLKMD-DGDGNVVLSARRVEDMKVWDEIEESYNN----HEIVTAKVINQVK-GGLT 394

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
                    +  S ++ +     S  V  GD    +++DFD R  +I LS K V
Sbjct: 395 ASLDGISAFIPASHVTVKFQRDLSKFV--GDDFQCEIIDFDKRKRRIVLSRKNV 446


>gi|16803977|ref|NP_465462.1| 30S ribosomal protein S1 [Listeria monocytogenes EGD-e]
 gi|224498612|ref|ZP_03666961.1| 30S ribosomal protein S1 [Listeria monocytogenes Finland 1988]
 gi|224501263|ref|ZP_03669570.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-561]
 gi|254827177|ref|ZP_05231864.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N3-165]
 gi|254831461|ref|ZP_05236116.1| 30S ribosomal protein S1 [Listeria monocytogenes 10403S]
 gi|254899365|ref|ZP_05259289.1| 30S ribosomal protein S1 [Listeria monocytogenes J0161]
 gi|254936823|ref|ZP_05268520.1| 30S ribosomal protein S1 [Listeria monocytogenes F6900]
 gi|255028957|ref|ZP_05300908.1| 30S ribosomal protein S1 [Listeria monocytogenes LO28]
 gi|284802383|ref|YP_003414248.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5578]
 gi|284995525|ref|YP_003417293.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5923]
 gi|16411391|emb|CAD00016.1| lmo1938 [Listeria monocytogenes EGD-e]
 gi|258599560|gb|EEW12885.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N3-165]
 gi|258609418|gb|EEW22026.1| 30S ribosomal protein S1 [Listeria monocytogenes F6900]
 gi|284057945|gb|ADB68886.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5578]
 gi|284060992|gb|ADB71931.1| 30S ribosomal protein S1 [Listeria monocytogenes 08-5923]
          Length = 381

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    + T   + ID +      S               IT+  +V  + +G+VV+++
Sbjct: 229 EVLEEGQKVTVKVIGIDPENERISLSIKATLPG----PWDGITEKAQVGSVLEGKVVRLV 284

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            FGAFV      +GLVHISQ+S E +    +V+ EG TV VK+L+ ++   ++ LS+K +
Sbjct: 285 TFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEADKRLSLSIKEL 344

Query: 691 DQNTGKP 697
                + 
Sbjct: 345 QDAPVEE 351



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   +V++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIKATLPGPW 263



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V   G++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDILV-LSKRKVDAE 89


>gi|295092746|emb|CBK78853.1| Transcriptional accessory protein [Clostridium cf. saccharolyticum
           K10]
          Length = 713

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I KG V  V+DFG FV     +DGLVHISQ++   +    +VV  GD V VK+LD 
Sbjct: 641 KPGMILKGTVRNVIDFGVFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVEVKVLDV 700

Query: 678 D-DRGKIKLSMK 688
           + ++ +I L+MK
Sbjct: 701 NLEKKRIGLTMK 712


>gi|228989269|ref|ZP_04149262.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228995452|ref|ZP_04155122.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|229003069|ref|ZP_04160924.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228758187|gb|EEM07377.1| RNA binding S1 domain protein [Bacillus mycoides Rock1-4]
 gi|228764313|gb|EEM13190.1| RNA binding S1 domain protein [Bacillus mycoides Rock3-17]
 gi|228770479|gb|EEM19050.1| RNA binding S1 domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 166

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|46339|emb|CAA30404.1| unnamed protein product [Sinorhizobium meliloti]
          Length = 568

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 32/276 (11%)

Query: 449 MDAGVPISKPVAGI---AMGLVKDGDDFIILSDISGDEDHLGHMDFKV-----AGTDSGI 500
           M A  P     A +   +       + ++    ++  E  +  +D  +            
Sbjct: 1   MSATNPTRDDFAALLEESFAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFG 60

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG----------EFT 550
              +      G    + V  ++ A   R+    +  +  S  RL++            F 
Sbjct: 61  AKAKDGTLKVGDEVEVYVERIENALGERVLSREKARREESWQRLEVKFEAGERVEGIIFN 120

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT----------GAKVNIDDDGTVKIASSSL 600
                  +  D     +      IR I + T            K++      V    + L
Sbjct: 121 QVKGGFTVDLDGAVAFLPRSQVDIRPIRDVTPADAQPAALRNLKMDKRRGNIVVSRRTVL 180

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            E  A  E    I    E  ++ +G V  + D+GAFV   G  DGL+H++ ++  RV   
Sbjct: 181 EESRA--EQRSEIVQNLEEGQVVEGVVKNITDYGAFVDL-GGIDGLLHVTDMAWRRVKHP 237

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           S++   G  V V+++  + +  +I L MK ++ +  
Sbjct: 238 SEIQNIGQQVKVQIIRINQETHRISLGMKQLESDPW 273



 Score = 64.5 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M ++     S I  +   +K+  I          
Sbjct: 203 GVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVKHPSEIQNIGQQVKVQII---------- 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +G   P  + ++     I +      +  G + +  I
Sbjct: 253 RINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHI 312

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKI 622
            E +  K N+     +  +      +                      ++          
Sbjct: 313 SEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAHSHPAGTE 372

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V    +FG F+   G  DG+VH+S L   R   +  +   +GD V   +LD D D+
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDK 432

Query: 681 GKIKLSMKVVDQNT 694
            +I L +K + ++ 
Sbjct: 433 ERISLGIKQLGRDA 446



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V K   G V  + D+GAFV      +GL+HIS++S  ++      ++  
Sbjct: 271 DPWDGIGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   +N  +
Sbjct: 331 SQEVDVVVLEVDPTKRRISLGLKQTLENPWQ 361



 Score = 44.1 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +   +V+ V D G  V      D    +  + LS +R  +  +    G TV  ++ +F  
Sbjct: 461 VVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRDRDEQRPERFSVGQTVDARVTNFSK 520

Query: 680 R-GKIKLSMKVVDQNTGKPIV 699
           +  KI+LS+K ++    K  V
Sbjct: 521 KDRKIQLSIKALEIAEEKEAV 541


>gi|315128002|ref|YP_004070005.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
 gi|315016516|gb|ADT69854.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
          Length = 774

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN------------KIYKGQVVKVMDFG 634
           IDD   +   +  ++E++      R      E               I +G V  V +FG
Sbjct: 604 IDDKFGLPTVTDIISELDKPGRDPRPEFKTAEFKAGVEKISDLKPGMILEGVVSNVANFG 663

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           AFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ D  R +I  +M++ D
Sbjct: 664 AFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKVKVVEVDAARKRISFTMRLDD 721


>gi|114328686|ref|YP_745843.1| 30S ribosomal protein S1 [Granulibacter bethesdensis CGDNIH1]
 gi|114316860|gb|ABI62920.1| SSU ribosomal protein S1P [Granulibacter bethesdensis CGDNIH1]
          Length = 571

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  A + A+R +  I   +    +        F P  ++   P   +  ++G       
Sbjct: 108 TLEKAFESAQRVQGTIYGRVKGGFTVDLGGAVAFLPGSQVDIRPVRDVGPLMGTPQPFQI 167

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             +++          G + ++  ++ E   A +    I  + E   I  G V  + D+GA
Sbjct: 168 LKMDRAR--------GNIVVSRRAVLEETRAEQRSELIQGLKEG-MILDGVVKNITDYGA 218

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+H++ ++ +R+   S+ ++ G TV V+++ F+ D  +I L MK ++ + 
Sbjct: 219 FVDL-GGVDGLLHVTDIAWKRINHPSEALQIGQTVKVQVIRFNSDTQRISLGMKQLEADP 277

Query: 695 GK 696
            +
Sbjct: 278 WE 279



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
                 +   V    +G++  + +FG F+      DG+VH+S +S  ++        ++G
Sbjct: 364 PWEQFLEQHPVGSELEGEIRNITEFGLFIGITADIDGMVHMSDISWDDQSETAMAAYEKG 423

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             V  ++LD D ++ +I L +K + ++  
Sbjct: 424 QVVRARVLDVDVEKERISLGIKQMHEDPA 452



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +         Y G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 276 DPWEGVAAKYPPGAKYSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 335

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K V  N  +
Sbjct: 336 SQEVDVVVLDVDSSKRRISLGLKQVQGNPWE 366



 Score = 39.5 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            +    V  V   G  V       G +  ++LS ++  +  D    G+ V  K+   D  
Sbjct: 463 DVVTCVVTAVQANGIEVKVGDVLSGFIRRAELSRDKADQRPDRFAVGEKVDAKVTAVDRA 522

Query: 680 RGKIKLSM--KVVDQN 693
             K++L++  K V+++
Sbjct: 523 ARKLQLTIKGKEVEED 538


>gi|114330421|ref|YP_746643.1| 30S ribosomal protein S1 [Nitrosomonas eutropha C91]
 gi|114307435|gb|ABI58678.1| SSU ribosomal protein S1P [Nitrosomonas eutropha C91]
          Length = 570

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A+++       +  ++   L+ +   +  F P      +    ++++     K +  
Sbjct: 107 LEDAMEKGTIVTGMVNGKVKGGLTATINGIRAFLPGSL---VDIRPVKDMTPYENKEMEF 163

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E     +    +  + E   + +G V  + D+GAF
Sbjct: 164 KVIKLDRKRN-----NVVVSRRAVLEETQGADRDELLASLQEGA-VVQGIVKNITDYGAF 217

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ L+  RV   ++V+  GD V  K+L FD ++ ++ L +K + ++  
Sbjct: 218 VDL-GGIDGLLHITDLAWRRVKHPTEVINVGDEVSAKILKFDQEKNRVSLGLKQLTEDPW 276



 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
              V+     +N+ D+ + KI      +   +        +    ++          G+V
Sbjct: 234 WRRVKHPTEVINVGDEVSAKILKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQGTRMFGKV 293

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + D+GAFV      +GLVH+S++    +    S +V+ GD V V +L+ D DR +I L
Sbjct: 294 TNMTDYGAFVEIEQGIEGLVHVSEMDWTNKNVYPSKIVQLGDEVEVMILEIDEDRRRISL 353

Query: 686 SMKVVDQNTGKP 697
            MK    N  + 
Sbjct: 354 GMKQCKPNPWEE 365



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +           +   E      GQ+  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCKPN----PWEEFSLSHEKGNKVTGQIKSITDFGLFIGLPGNID 397

Query: 645 GLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS  +   K     ++GD V   +L  D ++ +I L +K ++ + 
Sbjct: 398 GLVHLSDLSWIQTGEKAISEFRKGDEVEAVVLSIDVEKERISLGIKQLEGDP 449



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   + KG V  V   GA +      +G +  S+ S +++      V EG
Sbjct: 448 DPFNIYVASHDKGSLVKGTVKSVDAKGAVIALTDDVEGYLRASEFSRDKIEDIRTRVNEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKV-VDQNTGKPI 698
           D +   +++ D + + I LS+K  + +   K I
Sbjct: 508 DELEAAIINIDRKSRSISLSVKARIQEEEDKAI 540


>gi|172057815|ref|YP_001814275.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990336|gb|ACB61258.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 377

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D +    I S             +   +  EV ++ +G V ++ DFGAFV   G  D
Sbjct: 152 VELDQEKNRVILSHKAVVEGELNAKKKETLEHLEVGQVLEGTVQRLTDFGAFVDI-GGVD 210

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GLVHIS+++  RV + SD+V EG  V VK+L  D D  K+KLS+K       +
Sbjct: 211 GLVHISEMAHHRVERPSDIVTEGQKVEVKVLGVDRDTEKVKLSIKETQPGPWQ 263



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + +    E   I KG+V +++ FGAFV      +GL+HISQ++   +   S+V++EG 
Sbjct: 261 PWQQMEGKIEAGDIVKGRVRRIVQFGAFVELAPQVEGLLHISQIANRHIGSPSEVLEEGQ 320

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQN 693
            +  K+L+      KI LS +V++Q 
Sbjct: 321 EIEAKVLEVHLAEHKISLSTRVLEQE 346



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM          +++  G VVK+ D  A +      + ++ IS++S+  +      +K G
Sbjct: 4   EMKDMPDFEIHRDQVVTGTVVKIEDKQALIDIGYKTEAILPISEVSSLHLDDIQGALKVG 63

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVD 691
           D + VK+    D   + +S + VD
Sbjct: 64  DELQVKVKKITDEE-VVVSKREVD 86


>gi|291538052|emb|CBL11163.1| Ribosomal protein S1 [Roseburia intestinalis XB6B4]
          Length = 303

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 7/197 (3%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV---EIMA 557
           T +Q D   G I  +        A      ++ + + V    +  +              
Sbjct: 74  TVVQTDDGAGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAF 133

Query: 558 IPPDQI-RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           IP  QI  + +      I   +E     V+ + +  V    +   E EA     +    V
Sbjct: 134 IPASQITLDYVEDTDAWIGKEIEVRVITVDPEKEKLVLSGKAVAREAEAEERNHKISMIV 193

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P    + +G V  +M +GAF++      GLVHISQ+   R+ K S+V+KEG  V VK+++
Sbjct: 194 P--GTVMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKVKVVN 251

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D  KI LSMK + + 
Sbjct: 252 TND-NKISLSMKALQEE 267


>gi|166031130|ref|ZP_02233959.1| hypothetical protein DORFOR_00815 [Dorea formicigenerans ATCC
           27755]
 gi|166028977|gb|EDR47734.1| hypothetical protein DORFOR_00815 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D      + S+     E  ++         +V  +  G V  + ++GAFV       
Sbjct: 87  IDVDQANNRLVLSARELLKEKEKKEREEKIANIKVGSVLTGTVESLQNYGAFVRLEDGLS 146

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVH+SQ+S +R+    DV+  GD V VK++   D GKI LSMK +
Sbjct: 147 GLVHVSQISQKRIKFPKDVLNVGDEVQVKVIGVKD-GKISLSMKAL 191


>gi|90962328|ref|YP_536244.1| hypothetical protein LSL_1356 [Lactobacillus salivarius UCC118]
 gi|301300307|ref|ZP_07206514.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90821522|gb|ABE00161.1| S1-type RNA-binding domain [Lactobacillus salivarius UCC118]
 gi|300214979|gb|ADJ79395.1| S1-type RNA-binding domain protein [Lactobacillus salivarius CECT
           5713]
 gi|300852080|gb|EFK79757.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 154

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + DFGAFV     + GLVHIS++S   V    +V+  GD V VK+L  
Sbjct: 4   EVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLSV 63

Query: 678 DDRGKIKLSM-KVVDQN 693
            D GKI LS+ K VD+ 
Sbjct: 64  SDDGKIGLSIKKAVDKP 80


>gi|310826138|ref|YP_003958495.1| RNA binding S1 domain protein [Eubacterium limosum KIST612]
 gi|308737872|gb|ADO35532.1| RNA binding S1 domain protein [Eubacterium limosum KIST612]
          Length = 716

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  V+DFGAFV     +DGLVHISQ+S   ++  +DV+  GD V VK+L  D +R 
Sbjct: 649 LVGTVRNVIDFGAFVDIGVHQDGLVHISQISDRYISHPTDVLSVGDVVTVKVLSVDVERK 708

Query: 682 KIKLSM 687
           +I LSM
Sbjct: 709 RIGLSM 714


>gi|294673353|ref|YP_003573969.1| S1 RNA binding domain-containing protein [Prevotella ruminicola 23]
 gi|294474298|gb|ADE83687.1| S1 RNA binding domain protein [Prevotella ruminicola 23]
          Length = 731

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  + +FGAFV      DGLVHISQ++  R+A   DVVK    V V++ + D  
Sbjct: 661 MVLPGIVTNITNFGAFVDIGVHHDGLVHISQMANRRIAHPLDVVKLHQHVQVRVTEVDHR 720

Query: 680 RGKIKLSMKVV 690
           R +I LSMK +
Sbjct: 721 RQRISLSMKGL 731


>gi|227486765|ref|ZP_03917081.1| S1 domain RNA-binding protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235235|gb|EEI85250.1| S1 domain RNA-binding protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 697

 Score = 88.4 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           A   +G+  +   + +LS +SG   +L     +    +  +   +  + + G+ +    +
Sbjct: 477 AVNEVGVAINNASYKLLSYVSGLNQNLAK-RIEEDFKEGKLVYRKDLLDVKGLGKKTYEL 535

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
           A    +      + + + V  ES   + +    +++  I  +++   + +G   ++ I+ 
Sbjct: 536 AAGFLRFPSSPEILDNTAVHPESYK-IAKKIQDLDLDKIDIEKVAEELEVGIPTLKDIIA 594

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +   K   D         +    +           D  +V  + KG+V  + DFGAFV  
Sbjct: 595 EL-KKPGRDPREDNPEVLTKKEIMG---------IDDLKVGMVLKGKVRNITDFGAFVDI 644

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
               DGLVH+S++S + V    D +     V V++++ D +  +I LSM+
Sbjct: 645 GVGIDGLVHVSEISDKFVKNPHDELTNSQVVSVRIIEIDKKKERIGLSMR 694


>gi|114555239|ref|XP_001158675.1| PREDICTED: similar to ZCCHC17 protein isoform 4 [Pan troglodytes]
 gi|114555241|ref|XP_001158730.1| PREDICTED: nucleolar protein of 40 kDa isoform 5 [Pan troglodytes]
 gi|119628025|gb|EAX07620.1| zinc finger, CCHC domain containing 17, isoform CRA_a [Homo
           sapiens]
 gi|119628027|gb|EAX07622.1| zinc finger, CCHC domain containing 17, isoform CRA_a [Homo
           sapiens]
 gi|194379268|dbj|BAG63600.1| unnamed protein product [Homo sapiens]
          Length = 233

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 7/93 (7%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ + +  E NK+Y      V D+GAF+   G  + GLVH + +S+ RV K S++V  GD
Sbjct: 1   MKQLIEDTEKNKVYVAM---VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGD 57

Query: 669 TVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
            VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 58  KVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 90


>gi|29124581|gb|AAH49016.1| Zcchc17 protein [Danio rerio]
          Length = 194

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 7/100 (7%)

Query: 606 AREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTS 661
           A E +R    +   P +  I KG+VV V  +GAFV   G  + GLVH S++S  RV   +
Sbjct: 2   AEEHMREPVGLDGLPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPA 61

Query: 662 DVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGKPI 698
           ++V  G+ VW+K++     DD+ K+  SMK V+Q TG+ +
Sbjct: 62  EIVDVGEQVWIKVIGKEMKDDKVKLSFSMKSVNQGTGRDL 101


>gi|254514352|ref|ZP_05126413.1| general secretion pathway protein J [gamma proteobacterium NOR5-3]
 gi|219676595|gb|EED32960.1| general secretion pathway protein J [gamma proteobacterium NOR5-3]
          Length = 786

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +++ + +G V  V  FGAFV     +DG
Sbjct: 617 DILSELEKPGRDPRPEFKTAKLQDGIEKITDLKLDMVLEGTVTNVTSFGAFVDVGVHQDG 676

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD--QNTGKP 697
           LVHIS +S + +    +  K GD V VK++  D  R ++ LSM++ D  Q  G  
Sbjct: 677 LVHISAMSDKFIKDPREAAKAGDIVKVKVMAIDVPRKRVGLSMRLTDSAQEPGTE 731


>gi|237843989|ref|XP_002371292.1| S1 RNA-binding domain containing protein [Toxoplasma gondii ME49]
 gi|211968956|gb|EEB04152.1| S1 RNA-binding domain containing protein [Toxoplasma gondii ME49]
 gi|221483751|gb|EEE22063.1| 40S ribosomal protein S1, putative [Toxoplasma gondii GT1]
 gi|221504239|gb|EEE29914.1| 40S ribosomal protein S1, putative [Toxoplasma gondii VEG]
          Length = 378

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD 662
             A          P+   I+KG V K+  +GAFV      ++GL+HIS++S +RV    D
Sbjct: 16  REASPSEERQNGKPQSTDIHKGVVKKLQSYGAFVKVPDLDKEGLLHISRISDQRVENVED 75

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V+  G  VWVK+L   + GK++L MK V+Q+ G
Sbjct: 76  VLAVGQEVWVKVLS-QEDGKLRLCMKSVNQHDG 107



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
              PE++ I++G V ++ +FGAFV   G  RDGL+HIS +S++++ +  D +  GD VWV
Sbjct: 126 VKTPELDSIHQGTVRRIQEFGAFVSIDGFDRDGLLHISCISSQKLDRVDDALAVGDKVWV 185

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKP 697
           K+   ++ GK  L M+ + Q  G  
Sbjct: 186 KVTKVEEGGKYGLDMRGISQKDGAD 210


>gi|83945693|ref|ZP_00958038.1| 30S ribosomal protein S1 [Oceanicaulis alexandrii HTCC2633]
 gi|83850894|gb|EAP88754.1| 30S ribosomal protein S1 [Oceanicaulis alexandrii HTCC2633]
          Length = 565

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 172 GNIVVSRRAVLEESRAEQRAELVGQLAEG-EVREGVVKNITDYGAFVDL-GGIDGLLHVT 229

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S  RV   S+VV+ G TV V+++  + D  +I L MK +  +  
Sbjct: 230 DMSWSRVGHPSEVVEVGQTVQVQIIKINKDTQRISLGMKQLQSDPW 275



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +        ++KG+V  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 273 DPWDGVALKYPNGAVFKGRVTNIAEYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 332

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +LD D D+ ++ L +K   +N  +
Sbjct: 333 SQEVDVMVLDVDPDKRRVSLGIKQTQRNPWE 363



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 93/257 (36%), Gaps = 34/257 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +  G+VK+  D+    D+ G +   H+  M +   G  S +  +   +++  I       
Sbjct: 202 VREGVVKNITDYGAFVDLGGIDGLLHVTDMSWSRVGHPSEVVEVGQTVQVQII------- 254

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
              +  +    I   M ++ S+    +    P   +       I        +  G + +
Sbjct: 255 ---KINKDTQRISLGMKQLQSDPWDGVALKYPNGAVFKGRVTNIAEYGAFVELEPGVEGL 311

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEV 619
             + E +  K N+     V  +      +               +  R       +   V
Sbjct: 312 VHVSEMSWTKKNVHPGKIVSTSQEVDVMVLDVDPDKRRVSLGIKQTQRNPWEVFAEAHPV 371

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD 678
               +G+V  + +FG F+      DG+VH+S L  +R         K+GDTV  K+LD D
Sbjct: 372 GSEVEGEVKNITEFGLFIGVDEEIDGMVHLSDLDWDRSGEDAIQDYKKGDTVRAKVLDVD 431

Query: 679 -DRGKIKLSMKVVDQNT 694
            ++ ++ L +K +  + 
Sbjct: 432 VEKERVSLGVKQLGGDP 448



 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           +  +     V ++   G  V           +  S +S +R  +  +    GD V  ++ 
Sbjct: 455 KRGETVTCTVTEITTGGIEVTLGPDNLVKAFIRKSDISRDRAEQRPERFAVGDKVDARVT 514

Query: 676 DFDD-RGKIKLSMKVVDQNTGKPIV 699
           + D    ++ +S+K ++    K  V
Sbjct: 515 NIDKASRRVSVSIKALEMAEEKEAV 539


>gi|291532591|emb|CBL05704.1| Transcriptional accessory protein [Megamonas hypermegale ART12/1]
          Length = 728

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G V  + DFG FV       GL+HIS+LS + V    DVV  GD + V ++  
Sbjct: 646 KVGTIMRGTVRNITDFGVFVDIGIKTAGLIHISELSNKHVKHPLDVVSVGDILNVLVISV 705

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  R +I LS+K V + 
Sbjct: 706 DAKRNRIGLSLKQVTKE 722


>gi|302541359|ref|ZP_07293701.1| putative transcriptional accessory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458977|gb|EFL22070.1| putative transcriptional accessory protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 813

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  
Sbjct: 667 MILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVRVKVLDVDIP 726

Query: 680 RGKIKLSMKVVD 691
           R +I L++++ D
Sbjct: 727 RKRISLTLRLDD 738


>gi|326790718|ref|YP_004308539.1| Tex-like protein [Clostridium lentocellum DSM 5427]
 gi|326541482|gb|ADZ83341.1| Tex-like protein [Clostridium lentocellum DSM 5427]
          Length = 711

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 33/266 (12%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ES  +     +  +S +L+     I K V+   +   ++   F   S+I      +  
Sbjct: 472 VVESAVNEVGVDINTASASLLQYVAGIKKTVSQNIIAYREEVGAFKSRSEI----KKVKG 527

Query: 489 MDFKVAGTDSG---ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           +  KV    +G   IT  +  +   G+      +A +      L ++      L      
Sbjct: 528 LGPKVFEQCAGFLRITNGKNFLDATGVHPESYAVAEEL-----LKVVGYGKDELKA--RN 580

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
                 +V  + I  +Q    +G G   ++ I+++             K       ++  
Sbjct: 581 FKNLHEKVGNIEILAEQ----LGTGVPTLQDIIKELE-----------KPGRDPREDMPK 625

Query: 606 AREMIR--SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
                    I D+ E  K+ KG V  ++DFGAF+     +DGLVHISQ+S + +    +V
Sbjct: 626 PILHSEILEIKDLKEGMKL-KGTVRNIVDFGAFIDIGVHQDGLVHISQMSNKFIKHPLEV 684

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMK 688
           VK GD V V +L  D  + KI LSMK
Sbjct: 685 VKVGDIVEVSILSVDTIKNKIALSMK 710


>gi|78221406|ref|YP_383153.1| RNA binding S1 [Geobacter metallireducens GS-15]
 gi|78192661|gb|ABB30428.1| RNA binding S1 [Geobacter metallireducens GS-15]
          Length = 757

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA           +   + +G V  V  FGAFV     +DG
Sbjct: 615 DIVAELKKPGRDPREEFKTAAFRDDIRELSDLKEGMVLQGVVTNVTAFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVH+S LST  V   ++ V+ G+ V VK+L  D  R +I LS++   +   +P
Sbjct: 675 LVHVSHLSTRFVKDPNEAVRVGEVVKVKVLAVDVPRKRISLSIREAMEGGARP 727


>gi|21646202|gb|AAM71534.1| ribosomal protein S1 [Chlorobium tepidum TLS]
          Length = 550

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+N +   ++ S   +  F P  +I   P      ++G         ++    K+N   
Sbjct: 102 KIINRVKGGMTVSLSGVEAFLPGSQIDVKPVRDFDALVGKT-------MDFRVVKINPVT 154

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              V      L E  AA+     +    +V  + +G V  + DFG FV   G  DGLVHI
Sbjct: 155 QNIVVSHKVILEEEYAAK--REEMLANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHI 211

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           + ++  R+   S+VV+    + V ++ FD+   ++ L MK ++ +  + I
Sbjct: 212 TDITWGRINHPSEVVELDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENI 261



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++++      ++KG V  + DFG FV      DGLVHIS LS  +++   S++VK+
Sbjct: 343 DPWIALSEKYVEGSLHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKK 402

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + VK+L FD +  +I L  K ++ +  
Sbjct: 403 GQELEVKVLKFDVNARRIALGHKQINNDPW 432



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-------KGQV 627
            G +      V +D    V +          +  M +      E  +I         G+V
Sbjct: 216 WGRINHPSEVVELDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENIEIKYPVGIKATGRV 275

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +   S  V     V V +L+ D +  K+ L
Sbjct: 276 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQEVEVVILNIDKEHTKLSL 335

Query: 686 SMKVVDQNTG 695
           SMK V ++  
Sbjct: 336 SMKRVSEDPW 345



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G + ++++ G  V   G  DG V +S L    V       K GD + +++++FD +  +
Sbjct: 446 TGAISQIIEKGVIVILPGEVDGFVPVSHLLQGGVKDIHSSFKIGDELPLRVIEFDKENKR 505

Query: 683 IKLS 686
           I LS
Sbjct: 506 IILS 509


>gi|225706462|gb|ACO09077.1| Nucleolar protein of 40 kDa [Osmerus mordax]
          Length = 228

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 4/100 (4%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKT 660
                 E    +  +P +  I+KG+VV V  +GAFV   G  + GLVH+S++S  RV   
Sbjct: 2   AEFEEAEEPGGLDGLPTMYGIFKGEVVSVQTYGAFVKLPGYQKQGLVHVSEMSACRVENA 61

Query: 661 SDVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGKP 697
           S++V  G+ VW+K++     DD+ K+  SMK V+Q TG+ 
Sbjct: 62  SEIVDVGEQVWIKVIGKEVRDDKVKLSFSMKAVNQGTGRD 101


>gi|298529708|ref|ZP_07017111.1| ribosomal protein S1 [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511144|gb|EFI35047.1| ribosomal protein S1 [Desulfonatronospira thiodismutans ASO3-1]
          Length = 582

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 24/250 (9%)

Query: 465 GLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G +          D+ G E  L   H+D +       +   +MD +I  I+         
Sbjct: 127 GKIVKRIKGGYNVDLEGLEAFLPGSHVDLRPVPDMDALVGQEMDFRILKINRR-----RS 181

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQT 581
                R  +L E  + + +  L   +    V+       +    I +GG   +  I + +
Sbjct: 182 NVIISRRVLLEEERENMRQELLDTIKEGQVVQGKVKNITEYGVFIDLGGLDGLLHITDMS 241

Query: 582 GAKV-------NIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
             ++        + DD  +K+      E + +        +   +I +         G+V
Sbjct: 242 WKRIRHPKEMVQLGDDLELKVLGFDSEEKKVSLGLKQLVSDPWENIGEKYPEGTRMTGKV 301

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + D+GAFV      +GLVHIS++S  R +   S +VK GD V V +L  D DR +I L
Sbjct: 302 TNLADYGAFVELDDGVEGLVHISEMSWTRKLRHPSQLVKSGDEVEVVVLGIDSDRKRISL 361

Query: 686 SMKVVDQNTG 695
            MK V  N  
Sbjct: 362 GMKQVSPNPW 371



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+  +    +     L  F P   +   P   +  ++G         ++    K+N   
Sbjct: 128 KIVKRIKGGYNVDLEGLEAFLPGSHVDLRPVPDMDALVGQE-------MDFRILKINRRR 180

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              +      L E      M + + D  +  ++ +G+V  + ++G F+   G  DGL+HI
Sbjct: 181 SNVIISRRVLLEEERE--NMRQELLDTIKEGQVVQGKVKNITEYGVFIDL-GGLDGLLHI 237

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + +S +R+    ++V+ GD + +K+L FD +  K+ L +K +  +  + I
Sbjct: 238 TDMSWKRIRHPKEMVQLGDDLELKVLGFDSEEKKVSLGLKQLVSDPWENI 287



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +     V     G++  + DFG FV      +GLVH+S++S +++    +   EG
Sbjct: 456 DPWAEVPRHYPVGTTVTGKITNITDFGLFVEVEEGIEGLVHVSEMSRKKIKNPKEFFSEG 515

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVVDQNTGK 696
             +  K++    D+R ++ LS+K   +   K
Sbjct: 516 QEIQAKVIHVSADER-RLGLSIKQHLEEEEK 545



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A  + + +     +   I  G+VVKV      V      +G + +S+        T   V
Sbjct: 23  ALEDYLNADFGEVQEGSIVTGEVVKVEKDYVLVDVNFKSEGQIPVSEFQDAEGNLT---V 79

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSM 687
           +EGD V V +   D+  G I LS 
Sbjct: 80  QEGDKVDVFVTQKDENEGAISLSR 103


>gi|193213386|ref|YP_001999339.1| 30S ribosomal protein S1 [Chlorobaculum parvum NCIB 8327]
 gi|193086863|gb|ACF12139.1| RNA binding S1 domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 583

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+N +   ++ S   +  F P  +I   P      ++G         ++    K+N   
Sbjct: 135 KIINRVKGGMTVSLSGVEAFLPGSQIDVKPVRDFDALVGKT-------MDFRVVKINPVT 187

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              V      L E  AA+     +    +V  + +G V  + DFG FV   G  DGLVHI
Sbjct: 188 QNIVVSHKVILEEEYAAK--REEMLANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHI 244

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           + ++  R+   S+VV+    + V ++ FD+   ++ L MK ++ +  + I
Sbjct: 245 TDITWGRINHPSEVVELDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENI 294



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++++      ++KG V  + DFG FV      DGLVHIS LS  +++   S++VK+
Sbjct: 376 DPWIALSEKYIEGSLHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKK 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + VK+L FD +  +I L  K ++ +  
Sbjct: 436 GQELEVKVLKFDVNARRIALGHKQINNDPW 465



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-------KGQV 627
            G +      V +D    V +          +  M +      E  +I         G+V
Sbjct: 249 WGRINHPSEVVELDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENIEIKYPVGIKATGRV 308

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +   S  V     V V +L+ D +  K+ L
Sbjct: 309 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQDVEVVILNIDKEHTKLSL 368

Query: 686 SMKVVDQNTG 695
           SMK V ++  
Sbjct: 369 SMKRVMEDPW 378



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G + ++++ G  V   G  DG V +S L    V       K GD + +++++FD +  +
Sbjct: 479 TGAISQIIEKGVIVLLPGEVDGFVPVSHLLQGGVKDIHSSFKVGDELPLRVIEFDKENKR 538

Query: 683 IKLS 686
           I LS
Sbjct: 539 IILS 542


>gi|188580003|ref|YP_001923448.1| RNA binding S1 domain protein [Methylobacterium populi BJ001]
 gi|179343501|gb|ACB78913.1| RNA binding S1 domain protein [Methylobacterium populi BJ001]
          Length = 773

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  
Sbjct: 649 KPGMQLEGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLAV 708

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I LSM++ D   G P
Sbjct: 709 DVPRKRISLSMRLDDPIDGTP 729


>gi|160878496|ref|YP_001557464.1| RNA-binding S1 domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160427162|gb|ABX40725.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg]
          Length = 722

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 100/263 (38%), Gaps = 20/263 (7%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +     +  +S +L++    ISKP+A   +   ++   F     +         
Sbjct: 474 VVEDCVNKVGVDLNTASASLLEYISGISKPIAKNIVIYREENGKFKNRKQLLKVAKLGPK 533

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + A     +     D  + G S  +   + + A++    +  +  + L     ++  
Sbjct: 534 AFEQCA---GFLRINDGDNPLDGTS--VHPESYEAAEKLLEMLEVKDLRELQAKAKEVDA 588

Query: 549 FTPRVEIMAI-PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              +     +    ++   + +G   +  I+++             K +     E+    
Sbjct: 589 KREQSISQKVKDKKKMAQELSIGEITLTDIIKELE-----------KPSRDPREEMPKPI 637

Query: 608 EMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVK 665
                          I KG V  V+DFGAFV     +DGLVHISQLS ++ V    D+V 
Sbjct: 638 LRTDVLDMKDLTEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQLSKQKFVKHPLDIVS 697

Query: 666 EGDTVWVKLLDFD-DRGKIKLSM 687
            GD V VK+L  D  + +I+LSM
Sbjct: 698 VGDIVEVKVLSVDVSKKRIQLSM 720


>gi|227891602|ref|ZP_04009407.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741]
 gi|227866749|gb|EEJ74170.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741]
          Length = 154

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + DFGAFV     + GLVHIS++S   V    +V+  GD V VK+L  
Sbjct: 4   EVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLSV 63

Query: 678 DDRGKIKLSM-KVVDQN 693
            D GKI LS+ K VD++
Sbjct: 64  SDDGKIGLSIKKAVDKS 80


>gi|139439282|ref|ZP_01772724.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
           25986]
 gi|133775306|gb|EBA39126.1| Hypothetical protein COLAER_01740 [Collinsella aerofaciens ATCC
           25986]
          Length = 442

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I ++             E          D  E     KG V  V+DFGAFV     +D
Sbjct: 335 VDIVNELKKPGRDPRDDAPEVVFSRSALSIDDLEPGMELKGTVRNVVDFGAFVDVGVHQD 394

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           GLVHIS+L+   V   SDVV+ GDTV V +   D DR KI L+M
Sbjct: 395 GLVHISKLANRFVKHPSDVVRVGDTVKVWVEKVDRDRKKISLTM 438


>gi|27904178|gb|AAO27011.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 576

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  A + +K     I  ++    +     +  F P   +   P  +  ++ G       
Sbjct: 107 TLEQAYKDSKTVVGLINGKVKGGFTVELEDIRAFLPGSLVDIRPVRETMHLEGKE----- 161

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             +E    K++   +  V    + +     A E    +  + E   I  G V  + D+GA
Sbjct: 162 --LEFKVIKLDQKRNNVVVSRRAVIESEYNA-ERNLLLETLQEGL-IVSGIVKNLTDYGA 217

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +RV   S++V  GD V +K+L FD ++ ++ L +K +  + 
Sbjct: 218 FVDL-GGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 276

Query: 695 GKPI 698
              I
Sbjct: 277 WTKI 280



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--------REMIRSITDVPEVNKIY 623
            +    V+     VNI D+  +KI      +I  +            +     PE  KI 
Sbjct: 232 DMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKI- 290

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G+V  + D+G FV      +GLVH+S++    +    S +V+    V V +LD D +R 
Sbjct: 291 TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERR 350

Query: 682 KIKLSMKVVDQNTG 695
           +I L +K    N  
Sbjct: 351 RISLGLKQCKNNPW 364



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 54/267 (20%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G+VK+  D+    D+ G +   H+  M +K     S I  +  ++KI      I+  
Sbjct: 204 IVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKI-----KILKF 258

Query: 520 ALQQAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMA-------------------- 557
             ++ +       + ++    +SE   +  + T RV  +                     
Sbjct: 259 DREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEEGVEGLVHVSE 318

Query: 558 -------IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
                  I P ++  V  +   +I          ++ID++           +        
Sbjct: 319 MDWTNKNIHPSKMVQVNSVVKVMI----------LDIDEERRRISLGLKQCKNN----PW 364

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGD 668
              +          G++  + DFG F+   G+ DGLVH+S +S   ++    V   K+G+
Sbjct: 365 MEFSKKYNKGSHVVGKIKSITDFGIFIGLEGSIDGLVHLSDISWN-ISGEESVKKYKKGE 423

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   +L  D DR +I L +K + ++ 
Sbjct: 424 EVLAVVLQVDPDRERISLGIKQLQEDP 450



 Score = 41.8 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-- 573
           ++ + +      R  I   + +  +   ++  +   +   +     +I+++   G  +  
Sbjct: 337 VVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHV---VGKIKSITDFGIFIGL 393

Query: 574 ---IRGIVEQTGAKVNIDDDGTVKIASSSLAEI------------------EAAREMIRS 612
              I G+V  +    NI  + +VK        +                  +   +    
Sbjct: 394 EGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAK 453

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE----RVAKTSDVVKEGD 668
                +   +  G + K+ +    V      DGL+    +S E       K  +  K G+
Sbjct: 454 YVSSHKKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISDEIMNVHDNKPWNKAKIGE 513

Query: 669 TVWVKLLDFDDRGKI 683
            V VKL   D + +I
Sbjct: 514 IVEVKLNSIDKKERI 528


>gi|114566869|ref|YP_754023.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337804|gb|ABI68652.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 687

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 24/225 (10%)

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           + G      +     +S  I+     + +RG   +L+    V  E   Q  +F   +E  
Sbjct: 453 EDGYVKNLDEYINRELSFKIIEFNRNK-RRGSQVVLSRKELVAEEKAKQKKQFWEEIEEG 511

Query: 557 AIPPDQIRNVIGMGGKV-------IRGIVEQTGAKVN----IDDDGTVKIASSSLAEIEA 605
            +   +I+ ++  G  +       +  + E    +++    +  +G          + E 
Sbjct: 512 QVRKGRIKRLVDYGAFIDLGGYEGLLHVSEIAHTRIDQPSDVLQEGEEIDVYILALDREK 571

Query: 606 AR----------EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            R               + +  +   I +G VV++  FGAFV      DGLVHISQL+  
Sbjct: 572 ERVSLSRKKLLKSPWEIVMEKFQEGDIIEGTVVRIAPFGAFVEIEAGVDGLVHISQLANH 631

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK-VVDQNTGKPI 698
           RV K  DVV+  + + +K+L  D +  +I LS+K  +++   + +
Sbjct: 632 RVEKPEDVVQVNEKIKIKILSIDPEEKRIGLSLKEALNEMENQEV 676



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 66/108 (61%), Gaps = 3/108 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V ++   L   E A++  +   +  E  ++ KG++ +++D+GAF+   G  +GL+H+S++
Sbjct: 485 VVLSRKELVAEEKAKQK-KQFWEEIEEGQVRKGRIKRLVDYGAFIDL-GGYEGLLHVSEI 542

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +  R+ + SDV++EG+ + V +L  D ++ ++ LS K + ++  + ++
Sbjct: 543 AHTRIDQPSDVLQEGEEIDVYILALDREKERVSLSRKKLLKSPWEIVM 590



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++T     I +   VK   S+  E  A  E   +    P    + KG+V++V+D    V 
Sbjct: 296 QETQETQEIQEPE-VKEEVSANEESFAKLEAEMADFTTPNKGDVIKGKVIQVLDDEVMVD 354

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
             G  +G++ + ++S + +    ++V+ GD + V +L +DD G I LS K VD
Sbjct: 355 VGGKSEGIIPLREMSLQDIDSAKELVEVGDEIEVMVLKWDDDGTILLSKKKVD 407


>gi|299137403|ref|ZP_07030585.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600808|gb|EFI56964.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 566

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
           + + A  P     V            E T   + +D +    +    +   E AR + +S
Sbjct: 143 IGMRAFMPASRSGVRDAAEMEKLVGQEITCRIIKLDTEEEDVVVDRRVLVEEQARVLEQS 202

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   I  GQV  +  +GAFV   G  DGL+HIS +S  RV    DV+  G  + +
Sbjct: 203 RYAELKEGDIVSGQVRSLASYGAFVDL-GGIDGLLHISDISWSRVGTPEDVLTVGQQLQL 261

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           K+L  + +  +I L +K ++    + +
Sbjct: 262 KVLKVEPESKRISLGLKQLEAEPWEAV 288



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           E   ++ +  +  +   G V ++MDFGAFV      +GL+H+S++S  ++V K SD++K 
Sbjct: 283 EPWEAVGEKYKEGQRITGSVTRLMDFGAFVELEPGIEGLIHVSEMSWVQKVRKPSDLLKS 342

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           GDTV   +L       +I L +K    +    +
Sbjct: 343 GDTVDAMVLSVSPAERRISLGLKQALGDPWAEV 375



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           +G V ++M FGAFV      +GLVHIS++S  +R+    DV++ G+ V  +++  D   +
Sbjct: 386 EGPVTRLMKFGAFVELAEGVEGLVHISEISADKRINHPQDVLRVGEVVKAQVIGLDPEKR 445

Query: 683 -IKLSMKVV 690
            ++LSMK +
Sbjct: 446 QLRLSMKQL 454


>gi|260428264|ref|ZP_05782243.1| ribosomal protein S1 [Citreicella sp. SE45]
 gi|260422756|gb|EEX16007.1| ribosomal protein S1 [Citreicella sp. SE45]
          Length = 558

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEESRAEQRAEVIANLTEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++  
Sbjct: 226 DMAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQEDPW 271



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 269 DPWDLVAVKFPLGSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 328

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 329 SQEVDVMVLEIDPAKRRVSLGLKQTMRNPWE 359



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R      ++        +G+V  + +FG F+   G  DG+VH+S LS  +R  +     +
Sbjct: 355 RNPWEVFSETHPEGTQVEGEVKNITEFGLFIGLDGEIDGMVHLSDLSWDQRGEEAIQEYR 414

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K +
Sbjct: 415 KGDIVQAVVTEVDTEKERISLSIKAL 440



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 443 DKFAEAVGGVKRGSIITVNVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRSEQRPERFSVG 501

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D + V++ + D +  ++ LS+K  +    K  V
Sbjct: 502 DHIDVRVTNIDSKTRRLGLSIKAREIAEEKEAV 534


>gi|266623563|ref|ZP_06116498.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288864643|gb|EFC96941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 367

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 21/186 (11%)

Query: 527 GRLHILNEMSKVLSESRLQL-GEFTPRVEIMAIPPDQIRNVIGMGGKV-------IRGIV 578
            R  I+ +  +++   R ++  E   R+    +    I+NV   G  +       +  I 
Sbjct: 164 KRRRIIGDRKQLMVARRAEMQKELFERIHPGDVVEGTIKNVTDFGAFIDLGGADGLLHIS 223

Query: 579 EQTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQ 626
           E +  +V          +   V I   +  +I  + +   +        K     +  G+
Sbjct: 224 EMSWGRVESPKKVFKAGEKMRVLIKDINGDKIALSLKFPETNPWKDAAVKYAAGNVVVGR 283

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++ DFGAFV      D L+H+SQ+S + V K SDV+  G  +  K++DF+ D  KI L
Sbjct: 284 VARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDRKISL 343

Query: 686 SMKVVD 691
           SMK + 
Sbjct: 344 SMKALQ 349



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           +++     + I  ++ +   K          I       +    EM + + +      + 
Sbjct: 144 KDLSKYADQEIEFVITEFNPKR------RRIIGDRKQLMVARRAEMQKELFERIHPGDVV 197

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G +  V DFGAF+   GA DGL+HIS++S  RV     V K G+ + V + D +   KI
Sbjct: 198 EGTIKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPKKVFKAGEKMRVLIKDINGD-KI 255

Query: 684 KLSMKVVDQNTGKP 697
            LS+K  + N  K 
Sbjct: 256 ALSLKFPETNPWKD 269



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I  G+V+ V +    ++     DG++  ++ + ++    + VV  G
Sbjct: 8   QMLEESLKTIRTGEIVTGKVIDVKEDEIVLNIGYKSDGIIPRNEYTDDQNLDLTTVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K++   D  G++ LS K +  + G
Sbjct: 68  DEMEAKVIKVNDGEGQVALSYKRLAADRG 96


>gi|229543361|ref|ZP_04432421.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229327781|gb|EEN93456.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 128

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +Y G+V  +  FGAFV       GLVHIS++    V    D V  G+ V VK+L  
Sbjct: 5   EAGNVYTGKVTGIKPFGAFVALDEETQGLVHISEIKHGYVKDIHDHVHIGNEVKVKVLSV 64

Query: 678 D-DRGKIKLSMKVVD----QNTGKP 697
           D + GKI LS+K  +    Q+T KP
Sbjct: 65  DEENGKISLSIKATEEAPHQDTRKP 89


>gi|312880067|ref|ZP_07739867.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
 gi|310783358|gb|EFQ23756.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
          Length = 502

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 9/202 (4%)

Query: 504 QMDMKIGGISENI--MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561
            + +K+ GI      + ++++Q        ++E  +  + +   +   T     + I P 
Sbjct: 259 HVKVKVIGIDRETNRISLSIKQTLDDPWFTVHERWQKDARTEGTVTNLTDFGAFVEIEPG 318

Query: 562 QIRNVIGMGGKVIRGI-----VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +  ++ +G      I     V + G K+++                +   +  R + + 
Sbjct: 319 -VEGLVHIGDLSWSRIKHPREVLKKGQKIDVVVLDVDTDRKRISLGFKQLHDPWRDVEER 377

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
              +++   +VV++ DFGAFV      +GL+HISQLS +RV K  DV++EG  V  ++L+
Sbjct: 378 YGKDQMVNVKVVRLADFGAFVELEEGVEGLIHISQLSRQRVDKPQDVLQEGQEVEARILE 437

Query: 677 FDD-RGKIKLSMKVVDQNTGKP 697
            +    +I+LS++   +   + 
Sbjct: 438 VNPAERRIRLSLRPQSEEPAEE 459



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQ 626
           G G    R + +    K+   D    ++  S  + +E     +R           + +G 
Sbjct: 158 GRGINPSRLLEQAFPVKMIEKDRRKRRLVLSRRSMLEEELSSLREDFYANVHEGDVLEGD 217

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  +  FG FV+  GA +GLVHIS+LS +R AK  D+V +GD V VK++  D +  +I L
Sbjct: 218 VSSITSFGVFVNL-GALEGLVHISELSWQRNAKARDLVNKGDHVKVKVIGIDRETNRISL 276

Query: 686 SMKVVDQNTG 695
           S+K    +  
Sbjct: 277 SIKQTLDDPW 286


>gi|218778787|ref|YP_002430105.1| ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01]
 gi|218760171|gb|ACL02637.1| ribosomal protein S1 [Desulfatibacillum alkenivorans AK-01]
          Length = 616

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 594 KIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            I  S    +E  RE  RS T       K+ +G V  + ++G FV   G  DGL+HI+ +
Sbjct: 214 NIVLSRRVILEKEREEQRSSTLQNIHEGKVVEGVVKNITEYGVFVDL-GGIDGLLHITDI 272

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           S  RV   S++   G T+ VK+LD D +R ++ L MK + ++  
Sbjct: 273 SWGRVKHPSELFGVGQTITVKVLDLDLERERVSLGMKQLKEDPW 316



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-----VKIASSSLAEIEAAREMIRSIT- 614
           + I  +I +        +      V++ DD       +K ++  ++              
Sbjct: 347 EGIEGLIHVSEMSWTRKIRHPSKVVSVGDDLEAVVLDIKPSNRRVSLGMKQVAPNPWDVI 406

Query: 615 -DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWV 672
            +   +    +G++  + DFG F+      DGLVHIS +S  +R+    DV K+GD V  
Sbjct: 407 GEKYPIGTTIEGRIKNITDFGMFIGIDEGIDGLVHISDISWTKRINHPGDVYKKGDEVRA 466

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +L  D +  +  L +K ++ +  + I
Sbjct: 467 IVLHIDRENERFSLGIKQLEPDPWETI 493



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   + +D   V +   G+VV + D+GAFV      +GL+H+S++S  R +   S VV  
Sbjct: 314 DPWTTASDRYPVGERVSGKVVSLTDYGAFVELEEGIEGLIHVSEMSWTRKIRHPSKVVSV 373

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           GD +   +LD      ++ L MK V  N  
Sbjct: 374 GDDLEAVVLDIKPSNRRVSLGMKQVAPNPW 403



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +I++  +V     G +  V DFG FV      +GLVH+S+++ E+V         G
Sbjct: 488 DPWETISERYQVGTKVNGLITSVTDFGIFVELEEGIEGLVHVSEVAKEKVKTPVGQFNVG 547

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           DTV   +++ + +  +I LS+K ++++  +
Sbjct: 548 DTVETVVVNINPKERRIGLSIKRLEEDEQE 577


>gi|161485730|ref|NP_661192.2| 30S ribosomal protein S1 [Chlorobium tepidum TLS]
          Length = 583

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I+N +   ++ S   +  F P  +I   P      ++G         ++    K+N   
Sbjct: 135 KIINRVKGGMTVSLSGVEAFLPGSQIDVKPVRDFDALVGKT-------MDFRVVKINPVT 187

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              V      L E  AA+     +    +V  + +G V  + DFG FV   G  DGLVHI
Sbjct: 188 QNIVVSHKVILEEEYAAK--REEMLANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHI 244

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           + ++  R+   S+VV+    + V ++ FD+   ++ L MK ++ +  + I
Sbjct: 245 TDITWGRINHPSEVVELDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENI 294



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++++      ++KG V  + DFG FV      DGLVHIS LS  +++   S++VK+
Sbjct: 376 DPWIALSEKYVEGSLHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKK 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + VK+L FD +  +I L  K ++ +  
Sbjct: 436 GQELEVKVLKFDVNARRIALGHKQINNDPW 465



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-------KGQV 627
            G +      V +D    V +          +  M +      E  +I         G+V
Sbjct: 249 WGRINHPSEVVELDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENIEIKYPVGIKATGRV 308

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +   S  V     V V +L+ D +  K+ L
Sbjct: 309 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQEVEVVILNIDKEHTKLSL 368

Query: 686 SMKVVDQNTG 695
           SMK V ++  
Sbjct: 369 SMKRVSEDPW 378



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G + ++++ G  V   G  DG V +S L    V       K GD + +++++FD +  +
Sbjct: 479 TGAISQIIEKGVIVILPGEVDGFVPVSHLLQGGVKDIHSSFKIGDELPLRVIEFDKENKR 538

Query: 683 IKLS 686
           I LS
Sbjct: 539 IILS 542


>gi|119356256|ref|YP_910900.1| 30S ribosomal protein S1 [Chlorobium phaeobacteroides DSM 266]
 gi|119353605|gb|ABL64476.1| SSU ribosomal protein S1P [Chlorobium phaeobacteroides DSM 266]
          Length = 591

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +R+   + G+ +   V     K+N      V      L E  AAR     +   
Sbjct: 159 QIDVKPVRDFDALVGQTMDFRV----VKINPVTQNIVVSHKVILEEAYAAR--REEMLAN 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV     + V ++ 
Sbjct: 213 IKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVG 271

Query: 677 FDDR-GKIKLSMKVVDQNTGKPI 698
           FD+   ++ L MK ++ +  + I
Sbjct: 272 FDENTKRVSLGMKQLEAHPWENI 294



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-------KGQV 627
            G +      V++D    V +          +  M +      E  +I        +G++
Sbjct: 249 WGRINHPSEVVDLDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENIEIKYPVGSKARGRI 308

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +   S  V     V   +L+ D D  K+ L
Sbjct: 309 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVSLNQEVECVILNIDKDHTKLSL 368

Query: 686 SMKVVDQNTG 695
           SMK V+++  
Sbjct: 369 SMKRVNEDPW 378



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     +NID D T    S          +   ++++      ++KG V  + DFG FV
Sbjct: 350 QEVECVILNIDKDHTKLSLSMKRVN----EDPWIALSEKYIEASLHKGTVSNITDFGVFV 405

Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                 DGLVHIS LS  +++   S++VK+   + VK+L FD +  +I L  K ++ +  
Sbjct: 406 ELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELDVKVLKFDVNARRIALGHKQINPDPW 465

Query: 696 KP 697
             
Sbjct: 466 DD 467



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            ++ ++++ G  V   G  DG V +S L    V         GD + +++++FD +  +I
Sbjct: 480 ARISQIIEKGVIVILPGDVDGFVPVSHLLQGGVKDIHSSFALGDELPLRVIEFDKENKRI 539

Query: 684 KLS 686
            LS
Sbjct: 540 ILS 542


>gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822]
 gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis]
          Length = 791

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVA 730

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R ++ L+M++ D  T +P
Sbjct: 731 RKRVALTMRLND--TAEP 746


>gi|322420516|ref|YP_004199739.1| Tex-like protein [Geobacter sp. M18]
 gi|320126903|gb|ADW14463.1| Tex-like protein [Geobacter sp. M18]
          Length = 756

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V  FGAFV     +DGLVH+SQLS   +   +D VK G+ V VK+L  
Sbjct: 645 KEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRYMKDPNDAVKVGEIVKVKVLSA 704

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I LS+K  +  
Sbjct: 705 DPERKRISLSIKQAEPE 721


>gi|157129571|ref|XP_001661730.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872147|gb|EAT36372.1| ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1238

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLD 676
           KIY G+VV ++ FG FV        ++GLVHISQLS+E RV   +DVV   D V VK++ 
Sbjct: 284 KIYDGRVVNIVAFGCFVQLTSFRRKKEGLVHISQLSSEGRVNNVTDVVNRNDNVKVKVIS 343

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
              + KI L MK VDQ TG+ +
Sbjct: 344 IAGQ-KISLCMKDVDQQTGQDL 364


>gi|322420992|ref|YP_004200215.1| RNA-binding S1 domain-containing protein [Geobacter sp. M18]
 gi|320127379|gb|ADW14939.1| RNA binding S1 domain protein [Geobacter sp. M18]
          Length = 400

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 11/183 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  A       +  +  E+             F P  +I     +    ++G       
Sbjct: 110 QLEEAYAAGIPVQGVVEKEVKGGFEVKVAGSRAFCPFSQIALRRVEDTAALVGKQISF-- 167

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I E +       ++G   + S      E  ++   ++ +  +V    KG V  + DFGA
Sbjct: 168 KITEYS-------ENGRNIVLSHRALLEEEQQQQKDALKETLKVGDRVKGTVTSLRDFGA 220

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   GA +GL+ +S+++  RV+  SDV+  G  V V +   D ++ +I  S+K    + 
Sbjct: 221 FVSI-GAVEGLLPVSEVAWARVSHVSDVLSVGQEVEVVVKGIDWEKNRISFSLKDTLADP 279

Query: 695 GKP 697
            + 
Sbjct: 280 WEE 282



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +                G+V ++  FGAFV      DGL+HIS+L + +R+    +V+ E
Sbjct: 278 DPWEEAASAFPEGSYQNGKVARLTPFGAFVTLASGVDGLIHISKLGAGKRIQHPKEVLSE 337

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V VK+   D +  KI LS+  V +   +
Sbjct: 338 GQEVEVKVEAVDREAKKISLSLASVSRAAEE 368


>gi|225568091|ref|ZP_03777116.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM
           15053]
 gi|225163044|gb|EEG75663.1| hypothetical protein CLOHYLEM_04164 [Clostridium hylemonae DSM
           15053]
          Length = 376

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  K++D ++   K
Sbjct: 281 TGRVARMTDFGAFVELAPGVDALLHVSQISRAHVDKPSDVLSVGQEITAKIVDLNEAEKK 340

Query: 683 IKLSMKVVDQNT 694
           I LSMK ++ +T
Sbjct: 341 ISLSMKALEPDT 352



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   LS    +   F P      +     +++     + I
Sbjct: 98  ERLKEAYENKEVLKAPVAQILGGGLSVVIEEARVFIPASL---VSDTYEKDLSKYQDQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       + A  E  + + +  ++    +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAARAEKQKELFEKLQIGDTVEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V + GD V V + D +D  KI LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVENPKKVFQVGDIVKVLIKDINDT-KIALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  S+ + E     + +V  G
Sbjct: 8   QMLEESFKTIRNGEVVDGTVIDVKPDEIILNIGYKADGIITRSEYTNEPNVDLTTMVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K+L   D  G++ L+ K +    G
Sbjct: 68  DEMTAKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|126731017|ref|ZP_01746825.1| 30S ribosomal protein S1 [Sagittula stellata E-37]
 gi|126708319|gb|EBA07377.1| 30S ribosomal protein S1 [Sagittula stellata E-37]
          Length = 554

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 23/259 (8%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           D G  +   V  I  G       + +   +   E         V   D     ++     
Sbjct: 18  DEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFAEPGEQPNVQVGDEVEVFLRAAENA 77

Query: 510 GG---ISENI---------MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            G   IS  +         +  A     R    I   +    +        F P  ++  
Sbjct: 78  RGEAVISREMARREEAWDRLEKAYADDARVEGAIFGRVKGGFTVDLGGAVAFLPGSQVDV 137

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
            P      ++G+        +++          G + ++  ++ E   A +    I  + 
Sbjct: 138 RPVRDAGPLMGLKQPFQILKMDRRR--------GNIVVSRRAILEESRAEQRAEVIGKLQ 189

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + +  G V  + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+++  
Sbjct: 190 EGDSV-DGVVKNITEYGAFVDL-GGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKI 247

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           + +  +I L MK + ++  
Sbjct: 248 NKETHRISLGMKQLQEDPW 266



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVGVKYPLGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVDVMVLEIDPTKRRVSLGLKQTMRNPWE 354



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R      ++        +G+V  + +FG F+   G  DG+VH+S LS  +R  +     +
Sbjct: 350 RNPWEVFSETHPEGTQVEGEVKNITEFGLFIGLPGEIDGMVHLSDLSWDQRGEEAIQEYR 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K +
Sbjct: 410 KGDIVQAVVSEVDVEKERISLSIKAL 435



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     T   +   I   +V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEATGGVKRGSIVTVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRSEQRPERFSVG 496

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           D V V++ + D    ++ LS+K  +    K  V
Sbjct: 497 DKVDVRVTNIDMKTRRLGLSIKAREIAEEKEAV 529


>gi|323486378|ref|ZP_08091703.1| hypothetical protein HMPREF9474_03454 [Clostridium symbiosum
           WAL-14163]
 gi|323694998|ref|ZP_08109145.1| YhgF [Clostridium symbiosum WAL-14673]
 gi|323400360|gb|EGA92733.1| hypothetical protein HMPREF9474_03454 [Clostridium symbiosum
           WAL-14163]
 gi|323500942|gb|EGB16857.1| YhgF [Clostridium symbiosum WAL-14673]
          Length = 713

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   + +G   +R IV +             K A     E+                 
Sbjct: 594 KKLSQELEIGEITLRDIVSELE-----------KPARDPRDEMPKPILRTDVMDMKDLAP 642

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + KG V  V+DFGAFV     +DGLVHISQ++   +    + V  GD V VK+L  D 
Sbjct: 643 GMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHPLEAVSVGDIVEVKVLGVDL 702

Query: 679 DRGKIKLSMK 688
            + +I L+MK
Sbjct: 703 AKKRISLTMK 712


>gi|320334347|ref|YP_004171058.1| RNA-binding S1 domain-containing protein [Deinococcus maricopensis
           DSM 21211]
 gi|319755636|gb|ADV67393.1| RNA binding S1 domain protein [Deinococcus maricopensis DSM 21211]
          Length = 127

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 48/82 (58%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   +  G+V +V DFGAF+ F     GLVHISQ++   V   S+ ++EG+ V VK+
Sbjct: 1   MQLESGAVATGRVTRVTDFGAFIQFENGETGLVHISQIAHSFVRSVSEHLQEGENVEVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
           L  D+RG++ LS+K +     +
Sbjct: 61  LGRDERGRLDLSIKELQDEPEE 82


>gi|322437186|ref|YP_004219398.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX9]
 gi|321164913|gb|ADW70618.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX9]
          Length = 671

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +RN+ G  G  I   V +   K        V      L E + A++ +   T  
Sbjct: 221 QIEVRPVRNLDGYVGTEIEVRVIKLNKKRG----NVVISRKELLEEDQNAKKAVTLAT-- 274

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   +  G V  + D+GAFV   G  DGL+HI+ +S  R+    D+V  GD + VK+L 
Sbjct: 275 LEEGSVLTGTVKNLTDYGAFVDL-GGLDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLK 333

Query: 677 FD-DRGKIKLSMKVVDQNTGKP 697
           FD D+ ++ L  K +  +    
Sbjct: 334 FDKDKQRVSLGFKQLTPDPWLD 355



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 111/296 (37%), Gaps = 25/296 (8%)

Query: 422 TLRIVSEITESDGSSSMAT--------VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
            + +V E  E+ G   + +        V     A  ++  P+   V     G +      
Sbjct: 154 QIEVVVEREETHGGGYIVSHEKALRHKVWDVLEAAANSKTPVKGMVVSRVKGGLTVDIGI 213

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG--ISENIMVMALQQAKRGRLHI 531
                 S  E           GT+  +  ++++ K G   IS   ++   Q AK+     
Sbjct: 214 KAFLPGSQIEVRPVRNLDGYVGTEIEVRVIKLNKKRGNVVISRKELLEEDQNAKKAVTLA 273

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
             E   VL+ +   L ++        +    +  ++ +      G +      VN+ D+ 
Sbjct: 274 TLEEGSVLTGTVKNLTDYGA-----FVDLGGLDGLLHITDMS-WGRLTHPRDLVNVGDEI 327

Query: 592 TVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            VK+      +   +        +     T+   +    +G+V+ V D+GAFV      +
Sbjct: 328 QVKVLKFDKDKQRVSLGFKQLTPDPWLDATERYPIGAQVRGRVLSVTDYGAFVELEQGIE 387

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           GLVH+S+++  +R+   S +VK GD V   +L  +    +I L MK +  N  + +
Sbjct: 388 GLVHVSEMTWSKRMKHPSKLVKPGDEVDTIILSVNPNDRRISLGMKQLQDNPWEAL 443



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ D      I +G+V  + DFGAF+      DGLVH+S LS  +R+   S+V+K+G
Sbjct: 439 PWEALEDKYPTGAIIEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKG 498

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           + V   +L  +    ++ L +K +  +  
Sbjct: 499 EKVRAIVLGVEPENRRLSLGVKQLQPDVW 527



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++  +      +  + KG+V++   FGAFV      +GL H+S+ + +   K  + +K  
Sbjct: 525 DVWDTFFAQHRIGDVIKGKVLRTAQFGAFVEIAEGVEGLCHVSE-AVDATGKPVE-LKVD 582

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D    K++  + +  K+ LS++ V +   +
Sbjct: 583 DEHEFKIVKMNQEEKKVGLSIRAVGEEASR 612


>gi|242280849|ref|YP_002992978.1| 30S ribosomal protein S1 [Desulfovibrio salexigens DSM 2638]
 gi|242123743|gb|ACS81439.1| ribosomal protein S1 [Desulfovibrio salexigens DSM 2638]
          Length = 581

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLL 675
           PE  K Y G+V  + D+GAFV      +GLVHIS++S  R +   S +V+ GD V V +L
Sbjct: 287 PEGAK-YTGKVTNLADYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVRVGDEVDVVVL 345

Query: 676 DFD-DRGKIKLSMKVVDQNTG 695
             D D+ +I L MK V  N  
Sbjct: 346 GVDPDKKRISLGMKQVKPNPW 366



 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +    E    K+N      +      L E     EM   + +  E  +  KG+V  + ++
Sbjct: 160 VDQTYEFKILKINRRRSNVIVSRRVLLEEQRN--EMRSQLLETLEEEQTVKGKVKNITEY 217

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQ 692
           G F+   G  DGL+HI+ +S +R+    ++V  GD + +K+L+FD  G K+ L +K +  
Sbjct: 218 GVFIDL-GGLDGLLHITDMSWKRIKHPKEMVALGDELELKVLNFDKEGQKVSLGLKQLVP 276

Query: 693 NTGKPI 698
           +  + I
Sbjct: 277 DPWEDI 282



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +     V    +G V  + DFG FV      +GLVH+S++S +++   S++ KEG
Sbjct: 451 DPWSQVPTKYPVGCTLEGLVTNITDFGLFVEVEEGIEGLVHVSEISHKKIKNPSEMFKEG 510

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVVDQNTGK 696
            T+  K++    D+R ++ LS+K + ++T K
Sbjct: 511 VTIQAKVIHVSADER-RLGLSIKQLKEDTEK 540



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD- 678
            I +GQ+  + +FG F+      DGL+H+S +S  R V   S+V   GD+V  K+L  D 
Sbjct: 377 TILEGQIKNITEFGVFIGIEDGIDGLIHVSDISWTRKVRHPSEVYAVGDSVQAKVLTVDK 436

Query: 679 DRGKIKLSMKVVDQNTG 695
           +  K  L +K + ++  
Sbjct: 437 ENEKFTLGVKQLSEDPW 453


>gi|212637905|ref|YP_002314425.1| RNA binding protein (S1 domain) [Anoxybacillus flavithermus WK1]
 gi|212559385|gb|ACJ32440.1| RNA binding protein (S1 domain) [Anoxybacillus flavithermus WK1]
          Length = 152

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 50/105 (47%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +  +   + E         +     EV    +G+V  +  FGAFV       GLVHIS++
Sbjct: 1   MFFSLCIMKETIFQILRRSTFFMSIEVGSKLQGKVTGITKFGAFVELPEGATGLVHISEV 60

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           +   V   ++ +K GD V V++++ +  GKI LS+K   +   +P
Sbjct: 61  ADSYVKDINEHLKVGDVVEVRVINVEKDGKIGLSIKKAKEQASRP 105


>gi|325336774|gb|ADZ13048.1| Ribosomal protein S1 [Riemerella anatipestifer RA-GD]
          Length = 603

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I++     GK +   V     K+N +    V    + +       +  + I   
Sbjct: 177 QIDVKPIKDYDQYVGKTMEFKV----VKINPEFKNVVVSHKALIEADIE--DQKKEIIAQ 230

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGLVHI+ LS  RV   ++++++G TV V +LD
Sbjct: 231 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLVHITDLSWSRVNHPTEILEDGQTVKVVILD 289

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD D+ +I+L MK ++ +  + +
Sbjct: 290 FDEDKTRIQLGMKQLEAHPWEAL 312



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 24/253 (9%)

Query: 465 GLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G VK      ++ D+ G E  L    +D K            M+ K+  I+         
Sbjct: 152 GFVKSRTKGGMIVDVFGIEAFLPGSQIDVKPIKDYDQYVGKTMEFKVVKINPE----FKN 207

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQT 581
                +  I  ++     E   QL +    +E            I +GG   +  I + +
Sbjct: 208 VVVSHKALIEADIEDQKKEIIAQLEK-GQVLEGTVKNITSYGVFIDLGGVDGLVHITDLS 266

Query: 582 GAKVN----IDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQV 627
            ++VN    I +DG          + +  R              ++    +V    KG+V
Sbjct: 267 WSRVNHPTEILEDGQTVKVVILDFDEDKTRIQLGMKQLEAHPWEALDQNLKVGDKVKGKV 326

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GL+H+S++S    +    D VK GD V  ++L  D +  KI L
Sbjct: 327 VVLADYGAFVEVAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAQVLTLDKEERKISL 386

Query: 686 SMKVVDQNTGKPI 698
            MK + ++    I
Sbjct: 387 GMKQLSEDPWTNI 399



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I D   +   + G V    +FG F+      DGL++IS LS  +++   S+    
Sbjct: 394 DPWTNIQDKYPLGSKHSGTVRNFTNFGVFLELEEGIDGLIYISDLSWTKKIKHPSEFCSV 453

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +L+ D D  ++ L  K + +N  
Sbjct: 454 GDKLDVVVLELDVDARRLSLGHKQLTENPW 483



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D     + +    E +   E+ +        + +  G+VV++ D  A V      +G++ 
Sbjct: 35  DSFESGLNAEDRNEKKELEEIYKGSLSDLAEDDVIVGKVVRLTDKEAIVDIDFKSEGVIS 94

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           +++            +K GD V V +    D  G+++LS K
Sbjct: 95  LNEFRYNPN------LKVGDEVEVMVDRREDKTGQLQLSHK 129


>gi|297282801|ref|XP_001098380.2| PREDICTED: nucleolar protein of 40 kDa isoform 3 [Macaca mulatta]
          Length = 233

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 7/93 (7%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGD 668
           ++ +    E NK+Y      V D+GAF+   G  + GLVH + +S+ RV K S++V  GD
Sbjct: 1   MKQLIKATEKNKVYVAM---VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGD 57

Query: 669 TVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
            VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 58  KVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 90


>gi|68249168|ref|YP_248280.1| transcriptional accessory protein [Haemophilus influenzae 86-028NP]
 gi|68057367|gb|AAX87620.1| predicted transcriptional accessory protein [Haemophilus influenzae
           86-028NP]
          Length = 770

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--------- 611
             I++++G  G     +V Q  AK  ID+   +        E+E      R         
Sbjct: 585 QSIQDLMGNAG-----VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFA 639

Query: 612 ---SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   I +G V  V +FGAFV     +DGLVHIS LS + V     VVK G+
Sbjct: 640 EGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPLQVVKTGN 699

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            V VK+L+ D  R +I L+M+ +D++  K
Sbjct: 700 IVKVKVLEVDVLRKRIALTMR-LDESAVK 727


>gi|260583466|ref|ZP_05851214.1| 30S ribosomal protein S1 [Granulicatella elegans ATCC 700633]
 gi|260158092|gb|EEW93160.1| 30S ribosomal protein S1 [Granulicatella elegans ATCC 700633]
          Length = 407

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +IT+   V+    G V +   FGAFV      +GLVHISQ++ + +A   +V++ G 
Sbjct: 280 PWDNITERAAVDSTLVGTVKRFAAFGAFVELFPGVEGLVHISQIAHKHIATPQEVLQVGQ 339

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQ 692
            V VK+L+ ++   +I LS+K +++
Sbjct: 340 EVSVKVLEVNEAEKRISLSIKALEE 364



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D  + ++   +   E A +   ++  V E   I  G+V ++ +FGAF+   G  DGLVH+
Sbjct: 177 DNRLILSRKEIVANEKAAKRASALEAVYEGA-IVTGKVARLTNFGAFIDL-GGIDGLVHV 234

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S++S E V+K SD +  G TV  K++  D ++G++ LS+K         I
Sbjct: 235 SEISHEHVSKPSDFLAVGQTVEAKVIGLDAEKGRVSLSIKETVPGPWDNI 284


>gi|158522133|ref|YP_001530003.1| 30S ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
 gi|158510959|gb|ABW67926.1| RNA binding S1 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 492

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 78/216 (36%), Gaps = 16/216 (7%)

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
           +D  V  T  G   +       G   +++  A Q        ++           +    
Sbjct: 87  LDLYVVDTRDGEIRL-SKAMGAGSGVDMLYEAHQNRIPVEGKVIETCKGGFRIQVMGQTA 145

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
           F P  ++     ++    +G     +   +E  G  +       V        E    RE
Sbjct: 146 FCPVSQMDVHYVEKPEEFVGAVFPFLIERIEARGKNL------VVNRRRLLEQEQAEQRE 199

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +         I  G+VV++M +GAF+      +G+VHIS+LS  RV   S+V   G+
Sbjct: 200 KFLAQAR---PGDIVDGRVVRIMPYGAFMELQPGVEGMVHISELSWSRVGDPSEVTAVGE 256

Query: 669 TVWVKLLDFDDRG------KIKLSMKVVDQNTGKPI 698
            + V++L  D  G      KI LS K    +  K +
Sbjct: 257 VLPVRILAIDRTGSKTGGLKISLSAKQAAVDPWKTV 292



 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKT 660
             +AA +  +++ +  +     +G+V +  DFGAFV      +GLVHIS++S   RV K 
Sbjct: 281 AKQAAVDPWKTVGEKYKEGDKIEGKVTRCADFGAFVEVEPGIEGLVHISEMSHTRRVVKA 340

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            DV + GD V V +   D    ++ LS+K  + +  
Sbjct: 341 EDVARPGDRVAVMVTSVDPVNRRLSLSIKAAEGDPW 376



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A  +   ++ +   V +   G V +V+DFG F+       GL+  S +      K  + +
Sbjct: 371 AEGDPWLTVANRMAVGQTVSGTVERVLDFGCFISLAPGVTGLMPRSSMERAADPKAMEKL 430

Query: 665 KEGDTVWVKLLDFD-DRGKIKL 685
           K  D V VK+   +    KI L
Sbjct: 431 KADDPVTVKIETINLADKKISL 452


>gi|45358690|ref|NP_988247.1| RNA binding S1 domain-containing protein [Methanococcus maripaludis
           S2]
 gi|45047556|emb|CAF30683.1| RNA binding S1 [Methanococcus maripaludis S2]
          Length = 713

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            +  +++   +  G   +  I+++      +  +D    +  S + E+E  +E       
Sbjct: 588 KVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKE------- 640

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 I KG V  ++DFGAF+      DGL HIS+++   +    DV+  GD V V ++
Sbjct: 641 ----GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVM 696

Query: 676 DFD-DRGKIKLSMK 688
           D D D+ ++ LS+K
Sbjct: 697 DIDFDKKRVSLSIK 710


>gi|289523052|ref|ZP_06439906.1| SSU ribosomal protein S1P [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503595|gb|EFD24759.1| SSU ribosomal protein S1P [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 511

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +I +  +  +    +VVK++DFGAFV      +GL+HISQ+S   +   S V+K+G
Sbjct: 378 DPWSTIMERYQQGQDVTVRVVKIVDFGAFVEIESGIEGLIHISQISRRHIDDVSKVLKKG 437

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           D V  ++L+ D    +I+LS+K +++   + +
Sbjct: 438 DEVKARILEIDPNEKRIRLSIKALEEEEKEQV 469



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I +  +      G++   +DFGAFV      +GL+HIS +S   +    +V+K+G
Sbjct: 293 DPWEVIGEGLKPGDKIHGRITNTVDFGAFVEIKPGVEGLIHISDISWGHIDHPREVLKKG 352

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
             + V++LD D D+ +I L  K +
Sbjct: 353 QDIEVQVLDIDLDQKRISLGYKQL 376



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AR+      ++ E   + +G V  +  FGAFV      +GLVHIS+LS  +  K  DVVK
Sbjct: 207 ARKKKEFFENLEEG-DVLEGVVTSITSFGAFVDLGP-VEGLVHISELSWSKNVKPRDVVK 264

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +G+ V VK+L  D ++ KI LS+K  + +  + I
Sbjct: 265 KGNKVKVKVLHIDPEQEKISLSIKQTEPDPWEVI 298


>gi|291544171|emb|CBL17280.1| Transcriptional accessory protein [Ruminococcus sp. 18P13]
          Length = 722

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           + +L     R+       D I   +G+G   ++ IV +              +       
Sbjct: 580 KEELQSLWDRLN--KQGMDAISRQLGVGVPTLQDIVRELQKP-------GRDVRDELPPP 630

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +  + +++      P +     G V  V+DFGAFV      DGLVHISQ+    +    D
Sbjct: 631 LMRSGDIMELKDLKPGME--LVGTVRNVIDFGAFVDIGVHEDGLVHISQICNRYIKHPLD 688

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            VK G  V V++LD D  R +I L+M++ D N
Sbjct: 689 AVKVGQVVKVRVLDVDVKRKRIGLTMRLDDTN 720


>gi|291543623|emb|CBL16732.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Ruminococcus sp. 18P13]
          Length = 156

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E+ ++Y+G V  +  +GAFV       G+VHIS+++   V+   D + E  TV VK+
Sbjct: 1   MQVEIGQVYEGVVKGITPYGAFVDLADGVTGMVHISEVANVYVSNIRDHLTENQTVKVKV 60

Query: 675 LDFDDRGKIKLSMK 688
           L  ++ GKI LS+K
Sbjct: 61  LSINEAGKISLSIK 74


>gi|282898392|ref|ZP_06306383.1| RNA binding S1 [Raphidiopsis brookii D9]
 gi|281196923|gb|EFA71828.1| RNA binding S1 [Raphidiopsis brookii D9]
          Length = 718

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +     G+   +   I E T   +   ++  G    A    A        IR +T   E+
Sbjct: 590 ERLKKTGIKKYLTDAIGEPTLRDILRELEKPGRDPRAEFKYATFREGIREIRDLTVGMEL 649

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
               +G +  V +FGAFV     +DGLVHISQL+   V     +VK G  V V++L+ ++
Sbjct: 650 ----EGIITNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKTIVKVGQLVKVRVLEVNE 705

Query: 680 R-GKIKLSMK 688
           +  +I LSM+
Sbjct: 706 KLKRISLSMR 715


>gi|209521839|ref|ZP_03270516.1| RNA binding S1 domain protein [Burkholderia sp. H160]
 gi|209497722|gb|EDZ97900.1| RNA binding S1 domain protein [Burkholderia sp. H160]
          Length = 784

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ V    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQN 693
           R +I L+M++ D+ 
Sbjct: 717 RQRIALTMRLDDEP 730


>gi|255535011|ref|YP_003095382.1| 30S ribosomal protein S1 [Flavobacteriaceae bacterium 3519-10]
 gi|255341207|gb|ACU07320.1| SSU ribosomal protein S1p [Flavobacteriaceae bacterium 3519-10]
          Length = 597

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I++     GK +   V     K+N +    V    + +      ++  R I   
Sbjct: 166 QIDVKPIKDYDQFVGKTMEFKV----VKINPEFKNVVVSHKALIEADLEGQK--REIIGQ 219

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV   S+++ +G+TV V +LD
Sbjct: 220 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLIHITDLSWSRVNHPSEILSDGETVKVVILD 278

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I+L MK ++ +  
Sbjct: 279 FDDEKTRIQLGMKQLEAHPW 298



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV I D    K       +   A     +++   ++    KG+VV + D+GAFV     
Sbjct: 272 VKVVILDFDDEKTRIQLGMKQLEA-HPWDALSADMKIGDRVKGKVVVLADYGAFVEVAPG 330

Query: 643 RDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +GL+H+S++S    +    D VK GD V  ++L  D +  KI L MK + Q+    I
Sbjct: 331 VEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREDRKISLGMKQLSQDPWSNI 388



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     V   + G V    +FG FV      DGL++IS LS  +++   S+   
Sbjct: 382 QDPWSNIESKYPVQSKHVGTVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCA 441

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD + V +L+ D    ++ L  K + +N  
Sbjct: 442 VGDKLDVIVLELDTAARRLSLGHKQLLENPW 472



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
           N +  G+VV++ D  A V      +G++ +++    +       +  GD V V +    D
Sbjct: 55  NDVLVGRVVRLTDKEAIVDINFKSEGVISLNEFRYNQG------LAVGDEVEVMVDRRED 108

Query: 679 DRGKIKLSMK 688
             G+++LS K
Sbjct: 109 KSGQLQLSHK 118


>gi|167957320|ref|ZP_02544394.1| RNA binding S1 domain protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 358

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D   K      +E EA ++ +    +   V    +G V  V+DFG FV+  G  +GLVHI
Sbjct: 171 DADRKSNKLIFSEKEAVKDGLAERFEKLAVGDQVEGVVTGVVDFGVFVNVEG-IEGLVHI 229

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           S++S ERV   SD VK G T+  K++  D + ++ LSMK + Q+  
Sbjct: 230 SEISWERVNNPSDYVKTGQTIKAKIIAID-KDRLSLSMKQLTQDPW 274



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 15/132 (11%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-----IRSITDVPEVNKI-- 622
           G + +  I E +  +VN   D  VK   +  A+I A  +      ++ +T  P + ++  
Sbjct: 222 GIEGLVHISEISWERVNNPSD-YVKTGQTIKAKIIAIDKDRLSLSMKQLTQDPWLTEVQN 280

Query: 623 ------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                  +G V ++  FGAFV    A + LVHIS+L          V    +     +LD
Sbjct: 281 FSKGDKVEGTVTRITPFGAFVQVSPAIEALVHISELGDSNNVDPEKVFTLNERKEFVILD 340

Query: 677 FDDRGK-IKLSM 687
            D   + I LS+
Sbjct: 341 IDKENRKISLSL 352


>gi|161511183|ref|NP_777906.2| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38503269|sp|Q89AJ3|RS1_BUCBP RecName: Full=30S ribosomal protein S1
          Length = 566

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  A + +K     I  ++    +     +  F P   +   P  +  ++ G       
Sbjct: 97  TLEQAYKDSKTVVGLINGKVKGGFTVELEDIRAFLPGSLVDIRPVRETMHLEGKE----- 151

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             +E    K++   +  V    + +     A E    +  + E   I  G V  + D+GA
Sbjct: 152 --LEFKVIKLDQKRNNVVVSRRAVIESEYNA-ERNLLLETLQEGL-IVSGIVKNLTDYGA 207

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G  DGL+HI+ ++ +RV   S++V  GD V +K+L FD ++ ++ L +K +  + 
Sbjct: 208 FVDL-GGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266

Query: 695 GKPI 698
              I
Sbjct: 267 WTKI 270



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--------REMIRSITDVPEVNKIY 623
            +    V+     VNI D+  +KI      +I  +            +     PE  KI 
Sbjct: 222 DMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKI- 280

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G+V  + D+G FV      +GLVH+S++    +    S +V+    V V +LD D +R 
Sbjct: 281 TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERR 340

Query: 682 KIKLSMKVVDQNTG 695
           +I L +K    N  
Sbjct: 341 RISLGLKQCKNNPW 354



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 54/267 (20%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G+VK+  D+    D+ G +   H+  M +K     S I  +  ++KI      I+  
Sbjct: 194 IVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKI-----KILKF 248

Query: 520 ALQQAKRGR--LHILNEMSKVLSESRLQLGEFTPRVEIMA-------------------- 557
             ++ +       + ++    +SE   +  + T RV  +                     
Sbjct: 249 DREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEEGVEGLVHVSE 308

Query: 558 -------IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
                  I P ++  V  +   +I          ++ID++           +        
Sbjct: 309 MDWTNKNIHPSKMVQVNSVVKVMI----------LDIDEERRRISLGLKQCKNN----PW 354

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGD 668
              +          G++  + DFG F+   G+ DGLVH+S +S   ++    V   K+G+
Sbjct: 355 MEFSKKYNKGSHVVGKIKSITDFGIFIGLEGSIDGLVHLSDISWN-ISGEESVKKYKKGE 413

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V   +L  D DR +I L +K + ++ 
Sbjct: 414 EVLAVVLQVDPDRERISLGIKQLQEDP 440



 Score = 41.4 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-- 573
           ++ + +      R  I   + +  +   ++  +   +   +     +I+++   G  +  
Sbjct: 327 VVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHV---VGKIKSITDFGIFIGL 383

Query: 574 ---IRGIVEQTGAKVNIDDDGTVKIASSSLAEI------------------EAAREMIRS 612
              I G+V  +    NI  + +VK        +                  +   +    
Sbjct: 384 EGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAK 443

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE----RVAKTSDVVKEGD 668
                +   +  G + K+ +    V      DGL+    +S E       K  +  K G+
Sbjct: 444 YVSSHKKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISDEIMNVHDNKPWNKAKIGE 503

Query: 669 TVWVKLLDFDDRGKI 683
            V VKL   D + +I
Sbjct: 504 IVEVKLNSIDKKERI 518


>gi|152973909|ref|YP_001373426.1| hypothetical protein Bcer98_0056 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022661|gb|ABS20431.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 152

 Score = 88.4 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDEVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|32471711|ref|NP_864704.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|32397082|emb|CAD72386.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|327541012|gb|EGF27567.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
          Length = 560

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
              +  S  A +E  RE+ R       E   I +G V  V DFGAFV   G  DGL+H+S
Sbjct: 326 RGNLVLSRRAILEREREVKRQEQLEKIEPGDILEGVVRSVRDFGAFVDV-GGLDGLIHVS 384

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           +LS ER+   S+V++EG  V V++   D + GK+ L+ + + +N  
Sbjct: 385 KLSWERIKHPSEVIEEGQNVKVRVDKIDKQTGKMSLTYRDLLENPW 430



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             +V+  D  T K++ +    +E   +   S+     V  ++KG+V +  +FGAFV    
Sbjct: 405 KVRVDKIDKQTGKMSLTYRDLLENPWDSAESMFA---VGSVHKGEVTRTAEFGAFVRLTA 461

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             +GL HIS+L+T RV++ S VV  GD V VK++ FD D  K+ LS+K 
Sbjct: 462 GVEGLCHISELATHRVSRVSSVVNVGDEVDVKIMSFDRDSQKVGLSIKA 510


>gi|258545130|ref|ZP_05705364.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
 gi|258519649|gb|EEV88508.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
          Length = 556

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P  + +V  +    +    E     + +D      + S         +     +    + 
Sbjct: 131 PGSLVDVRPVKDPALSEGKEIDFKIIKLDQKRNNIVISRRAVLENEYKAERDEVLKNLQE 190

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + K  V  + D+GAF+   G  DGL+HI+ ++ +R+   S+VV  GD V VK+L FD 
Sbjct: 191 GDVVKAVVKNLTDYGAFLDI-GGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFDR 249

Query: 679 DRGKIKLSMKVVDQNTGKPIV 699
           +R ++ L +K +  +    I 
Sbjct: 250 ERARVSLGLKQLGSDPWGDIA 270



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYK 624
            +    ++     VNI D+  VK+          +        +    I     VN   +
Sbjct: 221 DMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLGLKQLGSDPWGDIAQRYPVNSQTR 280

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+G+FV      +GLVH+S++    +       V  G  V V +L+ D +R +
Sbjct: 281 GKVTNIADYGSFVEIEDGVEGLVHVSEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRR 340

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 341 ISLGMKQCQPNPWQE 355



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 91/256 (35%), Gaps = 38/256 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            +VK+  D+    DI G +   H+  M +K     S +  +  ++++  +  +       
Sbjct: 196 AVVKNLTDYGAFLDIGGVDGLLHITDMAWKRIKYPSEVVNIGDEVEVKVLKFD------- 248

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R R  +   + ++ S+    + +  P           I +      I  G + +  +
Sbjct: 249 ---RERARVSLGLKQLGSDPWGDIAQRYPVNSQTRGKVTNIADYGSFVEIEDGVEGLVHV 305

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E      N++    V +       I                      +           
Sbjct: 306 SEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQPNPWQEFEKKFNKGDR 365

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK---EGDTVWVKLLDFD- 678
            KGQ+  + DFG F+   G  DGL+H+S LS +      + V+   +G  V   +L  D 
Sbjct: 366 VKGQIKSITDFGVFIGLEGGIDGLIHLSDLSWD--ENGEEAVRHYQKGQEVEAVILAIDA 423

Query: 679 DRGKIKLSMKVVDQNT 694
           +R +I L +K + Q+T
Sbjct: 424 ERERISLGVKQLSQDT 439



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG VV+V +  A +      +G++  S+ + ERV   + ++  GD V  K+++ D + 
Sbjct: 452 VVKGNVVEVDERQAVIKLSDDINGILKASEAAIERVEDLTKLLSVGDEVEAKVINVDRKH 511

Query: 682 K-IKLSMKVVDQNTGKPIV 699
           K   LS++  D    K ++
Sbjct: 512 KTFSLSVRAKDVADEKAVI 530


>gi|255016643|ref|ZP_05288769.1| hypothetical protein LmonF_00096 [Listeria monocytogenes FSL
           F2-515]
          Length = 115

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS++       +P
Sbjct: 64  GDDGKIGLSIRKAVDRPDRP 83


>gi|218886795|ref|YP_002436116.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757749|gb|ACL08648.1| ribosomal protein S1 [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 577

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVV 664
           A          PE  K+ +G+V  ++D+GAFV      +GLVHIS++S  R +   S +V
Sbjct: 280 ADPWQDITAKYPEGAKL-QGRVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMV 338

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + GD V V +L  D D+ +I L MK V  N  +
Sbjct: 339 RVGDEVEVVILGVDQDKKRISLGMKQVKPNPWE 371



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +    E    K+N      +      L E   ++      T   E  +I  G+   + ++
Sbjct: 164 VNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLRT--LEEGQIVTGKAKNITEY 221

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G FV   G  DGL+HI+ +S +R+    ++V  G  + +K+L FD D  K+ L MK +  
Sbjct: 222 GVFVDL-GGLDGLLHITDMSWKRIRHPKELVTLGQELQLKVLSFDRDNQKVSLGMKQLVA 280

Query: 693 NTGKPI 698
           +  + I
Sbjct: 281 DPWQDI 286



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 100/258 (38%), Gaps = 34/258 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G  K+  ++ +  D+ G +   H+  M +K       +  +  ++++  +S +    
Sbjct: 210 IVTGKAKNITEYGVFVDLGGLDGLLHITDMSWKRIRHPKELVTLGQELQLKVLSFD---- 265

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R    +   M +++++    +    P    +      + +      +  G + +
Sbjct: 266 ------RDNQKVSLGMKQLVADPWQDITAKYPEGAKLQGRVTNLVDYGAFVELEPGVEGL 319

Query: 575 RGIVEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV------- 619
             I E +  +        V + D+  V I      +   +  M +   +  EV       
Sbjct: 320 VHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDQDKKRISLGMKQVKPNPWEVVAEKYPE 379

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
             I +G +  + +FG F+      DGL+H+S +S  +++   ++V K GD V  K+L  D
Sbjct: 380 GTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEVFKTGDVVQAKVLTVD 439

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +  K  L +K + ++  
Sbjct: 440 QENEKFTLGIKQLTEDPW 457



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +     V  + +G V  + DFG FV      +GLVH+S++S +++   S++ KEG
Sbjct: 455 DPWTHVPSRYPVGGLIEGTVTNITDFGLFVEVEEGIEGLVHVSEISQKKIKSPSEMFKEG 514

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             +  K++    +  ++ LS+K +     +
Sbjct: 515 VVIQAKVIHVSAEERRLGLSIKQLKDEEER 544


>gi|78355554|ref|YP_387003.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217959|gb|ABB37308.1| SSU ribosomal protein S1P [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 574

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +    IT     N    G+V  ++D+GAFV      +GLVHIS++S  R +   S +V+ 
Sbjct: 278 DPWADITSKYPENARLNGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRV 337

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +L  D D+ +I L MK V  N  +
Sbjct: 338 GDEVEVVILGVDPDKKRISLGMKQVKPNPWE 368



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+N      +      L E   ++      T   E  +I  G+   + ++G FV   G  
Sbjct: 171 KINRRRSNVIVSRRVLLEEERDSKRQDLLKT--LEEGQIVTGKAKNITEYGVFVDL-GGL 227

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           DGL+HI+ +S +R+    ++V  G  + +K+L FD D  K+ L MK +  +    I
Sbjct: 228 DGLLHITDMSWKRIRHPKELVSLGQELELKILSFDRDSQKVSLGMKQLVNDPWADI 283



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +     V  +  G V  + DFG FV      +GLVH+S++S ++V   S++ KEG
Sbjct: 452 DPWSKVPANYPVGTLVNGVVTNITDFGLFVEVEEGIEGLVHVSEISQKKVKSPSEMFKEG 511

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            T+  K++    +  ++ LS+K +  +  +
Sbjct: 512 VTIQAKVIHVSAEERRLGLSIKQIKDDEER 541



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 101/258 (39%), Gaps = 34/258 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G  K+  ++ +  D+ G +   H+  M +K       + ++  ++++  +S +    
Sbjct: 207 IVTGKAKNITEYGVFVDLGGLDGLLHITDMSWKRIRHPKELVSLGQELELKILSFD---- 262

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R    +   M +++++    +    P    +      + +      +  G + +
Sbjct: 263 ------RDSQKVSLGMKQLVNDPWADITSKYPENARLNGKVTNLVDYGAFVELEPGVEGL 316

Query: 575 RGIVEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV------- 619
             I E +  +        V + D+  V I      +   +  M +   +  EV       
Sbjct: 317 VHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMKQVKPNPWEVVAEKYPE 376

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
             I +G +  + +FG F+      DGL+H+S +S  +++   +++   GDTV  K+L  D
Sbjct: 377 GTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVD 436

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +  K  L +K + ++  
Sbjct: 437 QESEKFTLGVKQLTEDPW 454


>gi|194335601|ref|YP_002017395.1| RNA binding S1 domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308078|gb|ACF42778.1| RNA binding S1 domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 592

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +R+   + G+ +   V     K+N      V      L E  AAR     +   
Sbjct: 159 QIDVKPVRDFDALVGQTMDFRV----VKINPVTQNIVVSHKVILEEAYAAR--REEMLAN 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV     + V ++ 
Sbjct: 213 IKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVG 271

Query: 677 FDDR-GKIKLSMKVVDQNTGKPI 698
           FD+   ++ L MK ++ +  + I
Sbjct: 272 FDENTKRVSLGMKQLESHPWENI 294



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G+ +    E     +NID D T    S          +   ++++      ++KG 
Sbjct: 339 IKHPGQFVTLGQEVECVILNIDKDHTKLSLSMKRVN----EDPWIALSEKYIEGSLHKGT 394

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIK 684
           V  + DFG FV      DGLVHIS LS  +++   S++VK+   + VK+L FD    +I 
Sbjct: 395 VSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQDLEVKVLKFDVHARRIA 454

Query: 685 LSMKVVDQNTGKP 697
           L  K ++Q+    
Sbjct: 455 LGHKQINQDPWDE 467



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-------KGQV 627
            G +      V++D    V +          +  M +  +   E  ++        +G+V
Sbjct: 249 WGRINHPSEVVDLDQPIKVVVVGFDENTKRVSLGMKQLESHPWENIEVKYPVTSKAQGRV 308

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +      V  G  V   +L+ D D  K+ L
Sbjct: 309 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHTKLSL 368

Query: 686 SMKVVDQNTG 695
           SMK V+++  
Sbjct: 369 SMKRVNEDPW 378



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G++ ++++ G  V   G  DG V +S L    V       K GD + +++++FD +  +I
Sbjct: 480 GEISQIIEKGVIVILPGDVDGFVPVSHLLQGGVKDIHSSFKIGDALPLRVIEFDKENKRI 539

Query: 684 KLS 686
            LS
Sbjct: 540 ILS 542


>gi|295676889|ref|YP_003605413.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002]
 gi|295436732|gb|ADG15902.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002]
          Length = 783

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ V    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQN 693
           R +I L+M++ D+ 
Sbjct: 717 RQRIALTMRLDDEP 730


>gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1P [Intrasporangium calvum DSM 43043]
 gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043]
          Length = 493

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +R+      +  ++ +G V  +++FGAFV
Sbjct: 169 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQKGQVRQGVVSSIVNFGAFV 228

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 229 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGTDVTVEVLDVDMDRERVSLSLKATQEDPWQ 287



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       + ++  G+V K++ FGAFV      +GLVHIS+L+   V     VV   
Sbjct: 284 DPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQVVNVA 343

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D ++VK++D D +R +I LS+K  +  +
Sbjct: 344 DEIFVKVIDIDLERRRISLSLKQANDES 371



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE+T  +V I+D G+         +I AA +      +      I +G++VKV      +
Sbjct: 6   VEKTAPEVAINDIGS-------QEDILAAIDATIKDFND---GDIVEGRIVKVDRDEVLL 55

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
                 +G++   +LS +      ++VK GD V   +L   D  G++ LS K   
Sbjct: 56  DIGYKTEGVIPSRELSIKHDVDPGEIVKVGDEVEALVLQKEDKEGRLILSKKRAQ 110


>gi|254448853|ref|ZP_05062309.1| RNA binding S1 domain protein [gamma proteobacterium HTCC5015]
 gi|198261543|gb|EDY85832.1| RNA binding S1 domain protein [gamma proteobacterium HTCC5015]
          Length = 774

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + I +G V  V  FGAFV     +DGLVHIS +S E V    DVVK G+ V VK++  
Sbjct: 645 KDDMILEGVVTNVTHFGAFVDVGVHQDGLVHISAMSHEFVKDPRDVVKAGEVVKVKVMAV 704

Query: 678 D-DRGKIKLSMKVVD 691
           D  R +I LSM++ D
Sbjct: 705 DVARKRIGLSMRLDD 719


>gi|119471392|ref|ZP_01613864.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Alteromonadales
           bacterium TW-7]
 gi|119445668|gb|EAW26952.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Alteromonadales
           bacterium TW-7]
          Length = 774

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ 
Sbjct: 647 KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKVKVVEV 706

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I  +M++ D+
Sbjct: 707 DASRKRISFTMRLNDE 722


>gi|296117628|ref|ZP_06836212.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306]
 gi|295969359|gb|EFG82600.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306]
          Length = 749

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMIRS 612
           +  +    G  I  ++  T            DD   +   S  ++E++      R   ++
Sbjct: 564 VHKIASATGLTIDELIGNTRVLGGLNPADFADDTFGIPTVSDIISELDKPGRDPRPEFKT 623

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    V KI         +G V  V  FGAFV     +DGLVHIS +S + V+   +VV
Sbjct: 624 ATFKEGVEKISDLVPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNKFVSDPHEVV 683

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + G+ V VK+L+ D  R +I L++++ D+   K
Sbjct: 684 RSGEVVRVKVLEVDVPRKRISLTLRLEDEAQAK 716


>gi|260426043|ref|ZP_05780022.1| protein tex [Citreicella sp. SE45]
 gi|260420535|gb|EEX13786.1| protein tex [Citreicella sp. SE45]
          Length = 786

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMI 610
           D  R ++   G+ IR I+ Q        A+  +DD   +      L+E+E      R   
Sbjct: 571 DVARRIVQACGRDIRQIMGQPEALKGLRAEQFVDDSFGLPTVRDILSELEKPGRDPRPSF 630

Query: 611 RSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ T    V +I         +G V  V  FGAFV     +DGLVH+SQL+   V    +
Sbjct: 631 KTATFTDGVEEITDLRPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHE 690

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VVK GD V V++ + D  R +I LSM+    +  +
Sbjct: 691 VVKAGDVVRVRVTEVDVPRKRIGLSMRKDGGDAAE 725


>gi|209731456|gb|ACI66597.1| Nucleolar protein of 40 kDa [Salmo salar]
          Length = 129

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 4/103 (3%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVA 658
           +A+ +  ++    +  +P +  I KG+V  V  +GAF+   G  + GLVHIS+LS  RV 
Sbjct: 1   MADFDHDQQEPAGLDGLPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVE 60

Query: 659 KTSDVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGKPI 698
             ++VV  G+ VW+K++     DD+ K+  SMK V+Q TGK +
Sbjct: 61  NVAEVVDVGEQVWIKVIGREMRDDKVKLSFSMKAVNQGTGKDL 103


>gi|163856154|ref|YP_001630452.1| transcription accessory protein [Bordetella petrii DSM 12804]
 gi|163259882|emb|CAP42183.1| transcription accessory protein [Bordetella petrii]
          Length = 791

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVA 730

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R ++ L+M++ D  T +P
Sbjct: 731 RKRVALTMRLND--TAQP 746


>gi|54026120|ref|YP_120362.1| putative RNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54017628|dbj|BAD58998.1| putative RNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 783

 Score = 88.0 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V 
Sbjct: 639 EKVADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVKDPREVVKSGDVVK 698

Query: 672 VKLLDFD-DRGKIKLSMKVVDQN 693
           VK+L+ D  R +I LS+++ D+ 
Sbjct: 699 VKVLEVDVARQRIGLSLRLDDEP 721


>gi|317056439|ref|YP_004104906.1| hydroxymethylbutenyl pyrophosphate reductase [Ruminococcus albus 7]
 gi|315448708|gb|ADU22272.1| hydroxymethylbutenyl pyrophosphate reductase [Ruminococcus albus 7]
          Length = 656

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYKGQV 627
              ++     V+I D  TVKI               + +        +  +V +  K  +
Sbjct: 521 WNRIKHPSDVVSIGDKVTVKIKDIDPETKKVSLTYKKDSENPWEIFVNNYQVGQDVKATI 580

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           V +  FGAF       DGL+HISQ++ +RV   +D++  GD V  ++ + D D+ +I LS
Sbjct: 581 VSITSFGAFAQIIDGIDGLIHISQIANQRVNNVADILSVGDEVDCRITEIDADKKRISLS 640

Query: 687 MKVVDQNT 694
            + +  + 
Sbjct: 641 RRALLDDE 648



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  + D+G FV   G  DGLV  + LS  R+   SDVV  GD V VK+ D D +  K
Sbjct: 492 EGVVKSITDYGVFVDL-GGVDGLVRRADLSWNRIKHPSDVVSIGDKVTVKIKDIDPETKK 550

Query: 683 IKLSMKVVDQNTGK 696
           + L+ K   +N  +
Sbjct: 551 VSLTYKKDSENPWE 564



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 608 EMIRSITDVPEVNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E          + KIY     +G V  V D    V       G V +S+L+ +   K +D
Sbjct: 297 EEFNLEAIDKTLKKIYPGAKVEGTVESVNDTEVIVDIGTKHTGYVALSELTDDPGKKPAD 356

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           +V  GDT+ + ++   D  G + LS K VD +
Sbjct: 357 IVSVGDTIELIVIKTSDTDGTVMLSKKRVDAD 388


>gi|119484685|ref|ZP_01619167.1| RNA binding S1 [Lyngbya sp. PCC 8106]
 gi|119457503|gb|EAW38627.1| RNA binding S1 [Lyngbya sp. PCC 8106]
          Length = 716

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I+ I+D+ E  ++ +G V  V++FGAFV     +DGLVHISQL+ + V   +  VK 
Sbjct: 634 KEGIKEISDLKEGMEL-EGIVTNVVNFGAFVDIGVHQDGLVHISQLADQFVDDPNQFVKV 692

Query: 667 GDTVWVKLLDFDDR-GKIKLSMK 688
           G  V V++L+  ++  +I LSMK
Sbjct: 693 GQVVKVRVLEVKEKLKRIGLSMK 715


>gi|145638523|ref|ZP_01794132.1| transcription elongation factor GreB [Haemophilus influenzae
           PittII]
 gi|145272118|gb|EDK12026.1| transcription elongation factor GreB [Haemophilus influenzae
           PittII]
 gi|309750027|gb|ADO80011.1| Probable transcription accessory protein Tex [Haemophilus
           influenzae R2866]
          Length = 770

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYK 624
           +V Q  AK  ID+   +        E+E      R                  +   I +
Sbjct: 596 VVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILE 655

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V +FGAFV     +DGLVHIS LS + V     VVK G+ V VK+L+ D  R +I
Sbjct: 656 GTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVLRKRI 715

Query: 684 KLSMKVVDQNTGK 696
            L+M+ +D++  K
Sbjct: 716 ALTMR-LDESAVK 727


>gi|229015464|ref|ZP_04172465.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
 gi|229021671|ref|ZP_04178256.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|228739635|gb|EEL90046.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|228745848|gb|EEL95849.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
          Length = 162

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|37520556|ref|NP_923933.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
 gi|35211550|dbj|BAC88928.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
          Length = 320

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 13/223 (5%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGIT----AMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +   E  +  +D        G T     +  + + G ++ +I  +   +A   R+  L 
Sbjct: 60  YLPLQEMSINRVDDPTEVLGEGDTLDFFILSDENEEGQLTLSIRRIEYMKAWE-RVRKLQ 118

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
              + +      +      V I  +      + +         I E+   K    D+   
Sbjct: 119 TEDQTVRAKIFAVNRGGALVRIEGLRGFIPGSHLSTREPKEELIGEELPLKFLEVDEERN 178

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           ++  S        R ++    +  E  ++  G+V  +  +GAF+   G   GL+HIS++S
Sbjct: 179 RLVLSHR------RALVERRMNKLEAGQVVIGRVRGIKPYGAFIDI-GGVSGLLHISEIS 231

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            + +     V   GD V V ++D D +RG+I LS K +++  G
Sbjct: 232 HDHIETPHSVFNVGDEVKVMVIDLDAERGRISLSTKQLEETPG 274



 Score = 46.4 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I KG V  +   GA +         + + ++S  RV   ++V+ EGDT+   +L D ++
Sbjct: 35  DIVKGTVFSLEPRGALIDIGAKTAAYLPLQEMSINRVDDPTEVLGEGDTLDFFILSDENE 94

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 95  EGQLTLSIRRIE 106


>gi|259047955|ref|ZP_05738356.1| S1 RNA-binding domain protein [Granulicatella adiacens ATCC 49175]
 gi|259035375|gb|EEW36630.1| S1 RNA-binding domain protein [Granulicatella adiacens ATCC 49175]
          Length = 164

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  + +FG FV     + GLVHIS++S   +    +V+K GD V VK++  
Sbjct: 4   EVGNVIPGKVTGITNFGVFVDLGDRKTGLVHISEVSDSFIQDIKEVLKVGDEVKVKVMTI 63

Query: 678 DDRGKIKLS-MKVVDQN 693
            D GKI LS  + VD+ 
Sbjct: 64  ADDGKISLSIRRAVDKP 80


>gi|255528150|ref|ZP_05394977.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|255508163|gb|EET84576.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
          Length = 725

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             DQ  + IG+ G   +  +     K +I  +             +   +         +
Sbjct: 590 DIDQRVDNIGIEGLAKKLEIGVPTLK-DIIKEMKKPGRDPREEMPKPVLKTGIIDMAQLK 648

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
                 G V  V DFGAFV     +DGLVHISQLS + V    DVV+ GD V V +++ D
Sbjct: 649 PGMQLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVQVGDIVEVTVIEVD 708

Query: 679 D-RGKIKLSMKVV 690
           + R +I L+++ V
Sbjct: 709 EKRKRIALTIEKV 721


>gi|224500331|ref|ZP_03668680.1| hypothetical protein LmonF1_11944 [Listeria monocytogenes Finland
           1988]
          Length = 142

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS++       +P
Sbjct: 64  GDDGKIGLSIRKAVDRPDRP 83


>gi|169344163|ref|ZP_02865145.1| ribosomal protein S1 family [Clostridium perfringens C str.
           JGS1495]
 gi|169297621|gb|EDS79721.1| ribosomal protein S1 family [Clostridium perfringens C str.
           JGS1495]
          Length = 378

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 11/186 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +  A ++    ++ +   +   +      L  F P  +      + +  ++G   +V
Sbjct: 98  WDDLKDAFEKETSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGRRIENLEELVGKTLEV 157

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                      +  + D    + S  + + E      +++    +  +  KG+V ++  F
Sbjct: 158 ---------RVIEFNKDNRKVVVSRRVIDEEIRNNEKKALWSSIKSGEKRKGKVTRLAKF 208

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +I LS+K V +
Sbjct: 209 GAFVDI-GGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIK 267

Query: 693 NTGKPI 698
           N  + +
Sbjct: 268 NPWETL 273



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 30/229 (13%)

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR----LQLGEFTPRV 553
           +G+       +  G     +   + +    R+   N+ ++ +  SR     ++     + 
Sbjct: 128 NGLRVFMPASQCAGRRIENLEELVGKTLEVRVIEFNKDNRKVVVSRRVIDEEIRNNEKKA 187

Query: 554 EIMAIP-----PDQIRNVIGMGGKVIRGIVE--------------QTGAKVNIDDDGTVK 594
              +I        ++  +   G  V  G VE              +    V++ D+  V 
Sbjct: 188 LWSSIKSGEKRKGKVTRLAKFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVF 247

Query: 595 IASSSLAEIEAA------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++   +     A       +      +  +V  +  G+V   +  GAFV      +GLVH
Sbjct: 248 VSEVDMDRERIALSLKDVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVLPGIEGLVH 307

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           IS+++ E +AK SD+++ G  V VK+L+ DD   K+ LS+K   + + +
Sbjct: 308 ISEITDENIAKPSDILELGQEVKVKILNIDDENKKMSLSIKDAVETSNE 356


>gi|313205786|ref|YP_004044963.1| SSU ribosomal protein s1p [Riemerella anatipestifer DSM 15868]
 gi|312445102|gb|ADQ81457.1| SSU ribosomal protein S1P [Riemerella anatipestifer DSM 15868]
 gi|315022816|gb|EFT35840.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM]
          Length = 593

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I++     GK +   V     K+N +    V    + +       +  + I   
Sbjct: 167 QIDVKPIKDYDQYVGKTMEFKV----VKINPEFKNVVVSHKALIEADIE--DQKKEIIAQ 220

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGLVHI+ LS  RV   ++++++G TV V +LD
Sbjct: 221 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLVHITDLSWSRVNHPTEILEDGQTVKVVILD 279

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD D+ +I+L MK ++ +  + +
Sbjct: 280 FDEDKTRIQLGMKQLEAHPWEAL 302



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 24/253 (9%)

Query: 465 GLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G VK      ++ D+ G E  L    +D K            M+ K+  I+         
Sbjct: 142 GFVKSRTKGGMIVDVFGIEAFLPGSQIDVKPIKDYDQYVGKTMEFKVVKINPE----FKN 197

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQT 581
                +  I  ++     E   QL +    +E            I +GG   +  I + +
Sbjct: 198 VVVSHKALIEADIEDQKKEIIAQLEK-GQVLEGTVKNITSYGVFIDLGGVDGLVHITDLS 256

Query: 582 GAKVN----IDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQV 627
            ++VN    I +DG          + +  R              ++    +V    KG+V
Sbjct: 257 WSRVNHPTEILEDGQTVKVVILDFDEDKTRIQLGMKQLEAHPWEALDQNLKVGDKVKGKV 316

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GL+H+S++S    +    D VK GD V  ++L  D +  KI L
Sbjct: 317 VVLADYGAFVEVAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAQVLTLDKEERKISL 376

Query: 686 SMKVVDQNTGKPI 698
            MK + ++    I
Sbjct: 377 GMKQLSEDPWTNI 389



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I D   +   + G V    +FG F+      DGL++IS LS  +++   S+    
Sbjct: 384 DPWTNIQDKYPLGSKHSGTVRNFTNFGVFLELEEGIDGLIYISDLSWTKKIKHPSEFCSV 443

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +L+ D D  ++ L  K + +N  
Sbjct: 444 GDKLDVVVLELDVDARRLSLGHKQLTENPW 473



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D     + +    E +   E+ +        + +  G+VV++ D  A V      +G++ 
Sbjct: 25  DSFESGLNAEDRNEKKELEEIYKGSLSDLAEDDVIVGKVVRLTDKEAIVDIDFKSEGVIS 84

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           +++            +K GD V V +    D  G+++LS K
Sbjct: 85  LNEFRYNPN------LKVGDEVEVMVDRREDKTGQLQLSHK 119


>gi|308802864|ref|XP_003078745.1| DHX8_ARATH Putative pre-mRNA splicing factor ATP-dep (ISS)
           [Ostreococcus tauri]
 gi|116057198|emb|CAL51625.1| DHX8_ARATH Putative pre-mRNA splicing factor ATP-dep (ISS)
           [Ostreococcus tauri]
          Length = 1090

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLA-----EIEAAREMIRSITDVPEVNKIYKGQVVK 629
           R +      K N  DD  +    +        E+E +    R     P V ++ +G+V  
Sbjct: 126 RELYGDRDVKANAADDPRLCERVNDRETSHSREVENSTGEERMRDGEPSVGEVCRGRVTN 185

Query: 630 VMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V+DFGAFV     +   +GLVH+S ++   +    D    GD V+VK+L  + + K+ LS
Sbjct: 186 VLDFGAFVELVEFKRKFEGLVHVSAIADRHLKSAKDGASRGDRVFVKVLSRNGQ-KMSLS 244

Query: 687 MKVVDQNTGKP 697
           MK VDQ TGK 
Sbjct: 245 MKEVDQITGKE 255


>gi|300313473|ref|YP_003777565.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
 gi|300076258|gb|ADJ65657.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
          Length = 783

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + I +G V  V  FGAFV     +DGLVHIS LS   V     VVK G  V VK+L+ D+
Sbjct: 663 DMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTYVKDPHTVVKAGQVVKVKVLEVDE 722

Query: 680 -RGKIKLSMKVVDQNTG 695
            R +I L+M++ D    
Sbjct: 723 KRKRIALTMRLNDTAPA 739


>gi|282899504|ref|ZP_06307469.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
 gi|281195611|gb|EFA70543.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
          Length = 718

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +     G+   +   I E T   +   ++  G    A    A      + IR +T   E+
Sbjct: 590 ERLKKTGIKKYLTDAIGEPTLRDILRELEKPGRDPRAEFKYATFREGIKEIRDLTVGMEL 649

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
               +G +  V +FGAFV     +DGLVHISQL+   V     +VK G  V V++L+ ++
Sbjct: 650 ----EGIITNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKTIVKVGQLVRVRVLEVNE 705

Query: 680 R-GKIKLSMK 688
           +  +I LSM+
Sbjct: 706 KLKRISLSMR 715


>gi|134096173|ref|YP_001101248.1| putative polyribonucleotide nucleotidyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133740076|emb|CAL63127.1| putative transcription accessory protein TEX [Herminiimonas
           arsenicoxydans]
          Length = 780

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + I +G V  V  FGAFV     +DGLVHIS LS   V     VVK G  V VK+L+ D+
Sbjct: 663 DMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEVDE 722

Query: 680 -RGKIKLSMKVVDQNT 694
            R +I L+M++ D   
Sbjct: 723 KRKRIALTMRLSDAAP 738


>gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 415

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S   A  E        + +  E   +  G+V  + DFGAFV   GA D
Sbjct: 199 IEINRSRNRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGRVTSLCDFGAFVDIGGA-D 257

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH+S+LS  RV    +V+K GD V V +L  D D+ +I LS+K       
Sbjct: 258 GLVHLSELSWSRVKHPEEVLKVGDAVSVYILSVDEDKKRIALSIKRTQAEPW 309



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   ++TD  ++ +   G V ++  FGAFV      +GL+HIS++S ER+    DV+ EG
Sbjct: 307 EPWTTVTDRYQIGQSVSGVVTQLTAFGAFVRLEDGIEGLIHISEMSDERIQHPRDVINEG 366

Query: 668 DTVWVKLLDFDD-RGKIKLSMK 688
           D+V  +++  D  R +I LS +
Sbjct: 367 DSVSARIIRIDPTRKRIGLSTR 388


>gi|90420974|ref|ZP_01228878.1| 30S ribosomal subunit protein S1 [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334752|gb|EAS48528.1| 30S ribosomal subunit protein S1 [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 566

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRTVLEESRAEQRSEIVQNLEEG-QVVDGIVKNITDYGAFVDL-GGIDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   +++++ G TV V+++  + +  +I L MK ++ +  
Sbjct: 227 DMAWRRVNHPTEILQIGQTVKVQIIRINQETHRISLGMKQLEADPW 272



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              S  D   +  I +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G
Sbjct: 358 PWESFRDQFPIGTIVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKG 417

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V  ++LD D D+ +I L MK V  + 
Sbjct: 418 DLVKAQVLDVDIDKERISLGMKQVGGDP 445



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
             G+V  + D+GAFV      +GL+H+S++S  ++      ++     V V +L+ D ++
Sbjct: 285 VTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKILSTSQEVEVVVLEVDPNK 344

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L +K    N  +
Sbjct: 345 RRISLGLKQTLANPWE 360



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +   +V +V D G  V          +  S ++ +R  +  +    G  +  ++  FD +
Sbjct: 460 VVTCEVTEVKDGGLEVKIVDTDLTSFIRRSDIARDRDEQRPERYSVGQKIDARVTQFDKK 519

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             ++ +S+K +     K  V
Sbjct: 520 ARRVGVSIKALQIAEEKEAV 539


>gi|30018332|ref|NP_829963.1| hypothetical protein BC0066 [Bacillus cereus ATCC 14579]
 gi|206972584|ref|ZP_03233527.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|218231669|ref|YP_002364911.1| hypothetical protein BCB4264_A0066 [Bacillus cereus B4264]
 gi|218895197|ref|YP_002443608.1| S1 RNA binding domain protein [Bacillus cereus G9842]
 gi|228905858|ref|ZP_04069756.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|228919012|ref|ZP_04082392.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228937364|ref|ZP_04100011.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228950610|ref|ZP_04112745.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956503|ref|ZP_04118300.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963162|ref|ZP_04124332.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228970250|ref|ZP_04130910.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976820|ref|ZP_04137233.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|229039967|ref|ZP_04189731.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|229067826|ref|ZP_04201144.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|229074123|ref|ZP_04207170.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|229077345|ref|ZP_04210020.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|229094783|ref|ZP_04225789.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|229100856|ref|ZP_04231664.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|229107748|ref|ZP_04237385.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|229113736|ref|ZP_04243172.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
 gi|229125579|ref|ZP_04254612.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|229142867|ref|ZP_04271310.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|229148471|ref|ZP_04276728.1| RNA binding S1 domain protein [Bacillus cereus m1550]
 gi|229159235|ref|ZP_04287260.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|229176662|ref|ZP_04304067.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|296500894|ref|YP_003662594.1| hypothetical protein BMB171_C0056 [Bacillus thuringiensis BMB171]
 gi|29893872|gb|AAP07164.1| S1-type RNA-binding domain [Bacillus cereus ATCC 14579]
 gi|206732486|gb|EDZ49665.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|218159626|gb|ACK59618.1| S1 RNA binding domain protein [Bacillus cereus B4264]
 gi|218543176|gb|ACK95570.1| S1 RNA binding domain protein [Bacillus cereus G9842]
 gi|228606829|gb|EEK64245.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|228624250|gb|EEK81051.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|228635013|gb|EEK91585.1| RNA binding S1 domain protein [Bacillus cereus m1550]
 gi|228640630|gb|EEK97017.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|228657896|gb|EEL13701.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|228669733|gb|EEL25139.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
 gi|228675721|gb|EEL30928.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|228682556|gb|EEL36625.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|228688651|gb|EEL42523.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|228705969|gb|EEL58282.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|228709017|gb|EEL61143.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|228715310|gb|EEL67168.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|228727375|gb|EEL78568.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|228782916|gb|EEM31081.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|228789485|gb|EEM37404.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228796547|gb|EEM43985.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228803193|gb|EEM50014.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228809085|gb|EEM55569.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228822322|gb|EEM68303.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228840661|gb|EEM85922.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228853798|gb|EEM98557.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|296321946|gb|ADH04874.1| hypothetical protein BMB171_C0056 [Bacillus thuringiensis BMB171]
 gi|326937853|gb|AEA13749.1| hypothetical protein CT43_CH0056 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 161

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|16802264|ref|NP_463749.1| hypothetical protein lmo0218 [Listeria monocytogenes EGD-e]
 gi|47097257|ref|ZP_00234817.1| RNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|116871601|ref|YP_848382.1| hypothetical protein lwe0181 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|217965696|ref|YP_002351374.1| S1 family RNA-binding protein [Listeria monocytogenes HCC23]
 gi|224503462|ref|ZP_03671769.1| hypothetical protein LmonFR_13292 [Listeria monocytogenes FSL
           R2-561]
 gi|254829309|ref|ZP_05233996.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|254832461|ref|ZP_05237116.1| hypothetical protein Lmon1_13986 [Listeria monocytogenes 10403S]
 gi|254900997|ref|ZP_05260921.1| hypothetical protein LmonJ_14323 [Listeria monocytogenes J0161]
 gi|254913935|ref|ZP_05263947.1| RNA-binding protein [Listeria monocytogenes J2818]
 gi|254938275|ref|ZP_05269972.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|255025714|ref|ZP_05297700.1| hypothetical protein LmonocytFSL_04095 [Listeria monocytogenes FSL
           J2-003]
 gi|255030075|ref|ZP_05302026.1| hypothetical protein LmonL_15199 [Listeria monocytogenes LO28]
 gi|284803043|ref|YP_003414908.1| hypothetical protein LM5578_2800 [Listeria monocytogenes 08-5578]
 gi|284996184|ref|YP_003417952.1| hypothetical protein LM5923_2749 [Listeria monocytogenes 08-5923]
 gi|290894274|ref|ZP_06557241.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|16409583|emb|CAD00745.1| polyribonucleotide nucleotidyltransferase domain present [Listeria
           monocytogenes EGD-e]
 gi|47014357|gb|EAL05330.1| RNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|116740479|emb|CAK19599.1| RNA binding domain protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|217334966|gb|ACK40760.1| S1 family RNA-binding protein [Listeria monocytogenes HCC23]
 gi|258601722|gb|EEW15047.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|258610885|gb|EEW23493.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284058605|gb|ADB69546.1| hypothetical protein LM5578_2800 [Listeria monocytogenes 08-5578]
 gi|284061651|gb|ADB72590.1| hypothetical protein LM5923_2749 [Listeria monocytogenes 08-5923]
 gi|290556158|gb|EFD89705.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|293591953|gb|EFG00288.1| RNA-binding protein [Listeria monocytogenes J2818]
 gi|307569757|emb|CAR82936.1| S1 RNA-binding domain protein [Listeria monocytogenes L99]
 gi|313611246|gb|EFR86026.1| RNA-binding S1 domain-containing protein [Listeria monocytogenes
           FSL F2-208]
          Length = 142

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS++       +P
Sbjct: 64  GDDGKIGLSIRKAVDRPDRP 83


>gi|313625437|gb|EFR95194.1| RNA-binding S1 domain-containing protein [Listeria innocua FSL
           J1-023]
          Length = 142

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS++       +P
Sbjct: 64  GDDGKIGLSIRKAVDRPDRP 83


>gi|157964625|ref|YP_001499449.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
 gi|157844401|gb|ABV84902.1| 30S ribosomal protein S1 [Rickettsia massiliae MTU5]
          Length = 568

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V++    V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWEAI 283



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAIKEEFPVGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K +D++   K+GD +  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             + ++ ++ L +K +  N 
Sbjct: 434 AINIEKEQVSLGIKQLSPNP 453


>gi|108763761|ref|YP_631975.1| 30S ribosomal protein S1 [Myxococcus xanthus DK 1622]
 gi|108467641|gb|ABF92826.1| ribosomal protein S1 [Myxococcus xanthus DK 1622]
          Length = 570

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++++   V    KG+V KV DFGAFV      +GLVH+S+L  ERV    DVV+E 
Sbjct: 455 DPWETLSERLPVGSRVKGKVTKVTDFGAFVEIEPGIEGLVHVSELKEERVENPRDVVQEA 514

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
             V VK++D +    K+ LSMK +
Sbjct: 515 QDVEVKIIDINTPDRKVALSMKAL 538



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKG 625
           I     + + I ++   KV   +     I  S    +E  RE ++  T    +   + KG
Sbjct: 154 IRPVRNLDQYISKEFEFKVIKFNKKRGNIVLSRRVLLEKQREEMKKETLKNLKEGAVLKG 213

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
            V  + D+GAF+   G  DGL+HI+ +S  R+   S++   GD V V +L FD  + ++ 
Sbjct: 214 VVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRVVVLKFDPTQERVS 272

Query: 685 LSMKVVDQNTG 695
           L +K + ++  
Sbjct: 273 LGLKQIQEDPW 283



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   V    +G+VV + D+GAF+      +GLVH+S++S  +R+   S +++ 
Sbjct: 281 DPWHRADEKYPVGTRVRGKVVSITDYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEV 340

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           G  V   +LD D +  +I L MK ++QN  
Sbjct: 341 GQEVEAVVLDIDPKAKRIALGMKQIEQNPW 370



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           K++    E     ++ID             E    +     + D   +  + KGQ+  V 
Sbjct: 336 KILEVGQEVEAVVLDIDPKAKRIALGMKQIE----QNPWTLLEDKYPIGSVIKGQIRNVT 391

Query: 632 DFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           DFG FV      DGLVH+S +S   R+    ++ K+GD V   +L+ D +  +  L +K 
Sbjct: 392 DFGVFVGVEEGVDGLVHVSDISWTVRIKHPGEMFKKGDEVEAVVLNIDVENERFSLGIKQ 451

Query: 690 VDQNTGKPI 698
           +  +  + +
Sbjct: 452 LQPDPWETL 460



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           N++    +       A +  A    R    + +  +I KG VV+V    A V      +G
Sbjct: 4   NVNQQVGMDGGDEDFAAMFEASLKERGGDGILKEGEIVKGTVVQVTKDFAIVDIGYKSEG 63

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLS 686
            V IS+ +  R       V+ GD V V L    +D G + LS
Sbjct: 64  QVPISEFTNPR---GEVSVQAGDPVEVLLESRENDTGMVVLS 102


>gi|302344133|ref|YP_003808662.1| ribosomal protein S1 [Desulfarculus baarsii DSM 2075]
 gi|301640746|gb|ADK86068.1| ribosomal protein S1 [Desulfarculus baarsii DSM 2075]
          Length = 582

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E N + +G V  + D+G FV   G  DGL+HI+ +S  RV   SD+   GD + VK+L+F
Sbjct: 211 EENAVMRGVVKNITDYGVFVDL-GGIDGLLHITDMSWGRVGHPSDMFHIGDEITVKVLNF 269

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D DR ++ L +K +  +  
Sbjct: 270 DRDRERVSLGLKQLKDDPW 288



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +  +   V    +G+VV + D+GAFV      +GL+H+S++S  R V   S +V  
Sbjct: 286 DPWNNAAENFAVGTKVRGKVVSLADYGAFVEVDEGIEGLIHVSEMSWTRKVRHPSKIVNV 345

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V   +L  + +  +I L MK V+ N  
Sbjct: 346 GDEVEAVVLSLNPESKRISLGMKQVEPNPW 375



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G++ +   E     +NID +           E +    +  S     +V+ +    
Sbjct: 423 IKHPGEIYKKGDEVRAVVLNIDRENERFSLGIKQLEGDPWDRVPESYAQGTKVSGVV--- 479

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKL 685
              V DFG FV      +GL+H+S++S +++     + + GDT+  K+     +  KI L
Sbjct: 480 -TNVTDFGVFVELEEGVEGLIHVSEISGDKIKTPVGMFEIGDTITAKVTSISRKDRKIGL 538

Query: 686 SMKVVDQNT 694
           SM+ +D+  
Sbjct: 539 SMRRLDEEP 547



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I +   V    +G+V  V DFG F+      DGLVH+S +S  +R+    ++ K+G
Sbjct: 374 PWDLIAEKYPVGTTIEGRVKNVTDFGLFIGIDEGIDGLVHVSDISWSKRIKHPGEIYKKG 433

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V   +L+ D +  +  L +K ++ +  
Sbjct: 434 DEVRAVVLNIDRENERFSLGIKQLEGDPW 462


>gi|15612640|ref|NP_240943.1| hypothetical protein BH0077 [Bacillus halodurans C-125]
 gi|10172689|dbj|BAB03796.1| BH0077 [Bacillus halodurans C-125]
          Length = 137

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   ++++  G  V VK+L+ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPGGSTGLVHISEVADHYVKDINELLTVGQEVQVKVLNV 63

Query: 678 DDRGKIKLS-MKVVDQNTGKP 697
           +  GKI LS  K +DQ   +P
Sbjct: 64  ESDGKIGLSIRKALDQ-PERP 83


>gi|226306799|ref|YP_002766759.1| 30S ribosomal protein S1 [Rhodococcus erythropolis PR4]
 gi|226185916|dbj|BAH34020.1| probable 30S ribosomal protein S1 [Rhodococcus erythropolis PR4]
          Length = 495

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDALVKVIDIDLERRRISLSLKQANED 368



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 167 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFV 226

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 227 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWR 285



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T  +V I+D G+         +  AA +      +      I +G +VKV      +   
Sbjct: 7   TSPQVAINDIGS-------AEDFLAAIDATIKYFND---GDIVEGTIVKVDRDEVLLDIG 56

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +     ++VV  GD V   +L   D  G++ LS K   
Sbjct: 57  YKTEGVIPSRELSIKHDVDPNEVVSVGDAVEALVLTKEDKEGRLILSKKRAQ 108


>gi|109900524|ref|YP_663779.1| RNA binding S1 [Pseudoalteromonas atlantica T6c]
 gi|109702805|gb|ABG42725.1| RNA binding S1 [Pseudoalteromonas atlantica T6c]
          Length = 775

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 18/148 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR----------- 611
           + ++IG        ++++   +  +DD   +   +  ++E+       R           
Sbjct: 585 VNDLIGNT-----ELLKKLEPQQFVDDSFGLPTVTDIISELLKPGRDPRPEFKTATFKEG 639

Query: 612 -SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S  +  +   I +G V  V +FGAFV     +DGLVHIS ++ + ++   ++VK GD V
Sbjct: 640 VSSLNDLKEGMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKYISDPREIVKTGDIV 699

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            VK+++ D  R ++  +M++ D  + KP
Sbjct: 700 KVKVMEVDVARKRVSFTMRLNDDISAKP 727


>gi|169826215|ref|YP_001696373.1| general stress protein 13 (GSP13) [Lysinibacillus sphaericus C3-41]
 gi|168990703|gb|ACA38243.1| General stress protein 13 (GSP13) [Lysinibacillus sphaericus C3-41]
          Length = 125

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    E+  +  G+V  +  +GAFV       GLVHIS+++   V   S+ +  G  V V
Sbjct: 1   MVKKYELGDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVAV 60

Query: 673 KLLDFDDR-GKIKLSMKVVDQNT 694
           K+L+ D+   KI LSM+ + +  
Sbjct: 61  KILEIDEEAEKISLSMRALQERP 83


>gi|16799327|ref|NP_469595.1| hypothetical protein lin0250 [Listeria innocua Clip11262]
 gi|46906450|ref|YP_012839.1| hypothetical protein LMOf2365_0229 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093160|ref|ZP_00230935.1| RNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|226222847|ref|YP_002756954.1| hypothetical protein Lm4b_00216 [Listeria monocytogenes Clip81459]
 gi|254825868|ref|ZP_05230869.1| RNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|254854448|ref|ZP_05243796.1| RNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|254933058|ref|ZP_05266417.1| RNA-binding protein [Listeria monocytogenes HPB2262]
 gi|254994426|ref|ZP_05276616.1| hypothetical protein LmonocytoFSL_16697 [Listeria monocytogenes FSL
           J2-064]
 gi|255521744|ref|ZP_05388981.1| hypothetical protein LmonocFSL_11052 [Listeria monocytogenes FSL
           J1-175]
 gi|289433573|ref|YP_003463445.1| RNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|300766351|ref|ZP_07076310.1| RNA-binding protein [Listeria monocytogenes FSL N1-017]
 gi|315301120|ref|ZP_07872407.1| RNA-binding S1 domain-containing protein [Listeria ivanovii FSL
           F6-596]
 gi|21667248|gb|AAM74000.1|AF467001_1 YabR-like protein [Listeria monocytogenes]
 gi|16412679|emb|CAC95483.1| polyribonucleotide nucleotidyltransferase domain present [Listeria
           innocua Clip11262]
 gi|46879714|gb|AAT03016.1| RNA-binding protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018467|gb|EAL09225.1| RNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|225875309|emb|CAS04006.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607848|gb|EEW20456.1| RNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|289169817|emb|CBH26355.1| RNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|293584616|gb|EFF96648.1| RNA-binding protein [Listeria monocytogenes HPB2262]
 gi|293595107|gb|EFG02868.1| RNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|300512950|gb|EFK40038.1| RNA-binding protein [Listeria monocytogenes FSL N1-017]
 gi|313630509|gb|EFR98355.1| RNA-binding S1 domain-containing protein [Listeria ivanovii FSL
           F6-596]
 gi|313635128|gb|EFS01460.1| RNA-binding S1 domain-containing protein [Listeria seeligeri FSL
           N1-067]
 gi|313639794|gb|EFS04532.1| RNA-binding S1 domain-containing protein [Listeria seeligeri FSL
           S4-171]
 gi|328467974|gb|EGF39001.1| hypothetical protein LM1816_04868 [Listeria monocytogenes 1816]
 gi|328469745|gb|EGF40667.1| hypothetical protein LM220_06692 [Listeria monocytogenes 220]
 gi|332310627|gb|EGJ23722.1| S1 RNA binding domain protein [Listeria monocytogenes str. Scott A]
          Length = 142

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS++       +P
Sbjct: 64  GDDGKIGLSIRKAVDRPDRP 83


>gi|288957134|ref|YP_003447475.1| small subunit ribosomal protein S1 [Azospirillum sp. B510]
 gi|288909442|dbj|BAI70931.1| small subunit ribosomal protein S1 [Azospirillum sp. B510]
          Length = 568

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A      + ++ E  +I +G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRAVLEESRAEARSELVANLKEG-QILQGVVKNITDYGAFVDL-GGVDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++  R+   S+ ++ G TV V+++ F+ +  +I L MK ++ +  +
Sbjct: 231 DIAWRRINHPSEALQIGQTVTVQVIRFNPETQRISLGMKQLEADPWE 277



 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V+  +KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 274 DPWEGVEAKYPVSAKFKGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVST 333

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
              V V +LD D +  +I L +K    N  +
Sbjct: 334 SQEVEVMVLDVDPQKRRISLGLKQCLDNPWE 364



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 82/261 (31%), Gaps = 15/261 (5%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDI-SGDE--DHLGHMDF-KVAGTDSGITAMQMD 506
            GV    PV+    G V +  D+    ++  G E   H+  M + K       I +   +
Sbjct: 277 EGVEAKYPVSAKFKGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQE 336

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +++  +  +     +    +  L    E          +L      +    +      ++
Sbjct: 337 VEVMVLDVDPQKRRISLGLKQCLDNPWETFTDKFGPGTELEGEVKNITEFGLFVGLPGDI 396

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA----------AREMIRSITDV 616
            GM         +     +     G          ++E           A +   S T  
Sbjct: 397 DGMVHMSDLDWNKSGEEAIAEYKKGDRVKVKVLDVDVEKERISLGIKQLASDPFESATAG 456

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            + N++    V +V D G  V       G +  S LS +R  +  D    G+ V  K+  
Sbjct: 457 LKKNEVVTCTVTQVTDGGIEVTVGEGYTGFIRKSDLSRDRSEQRPDRFAVGEKVDAKVTQ 516

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
            D    +I LS+K  +    K
Sbjct: 517 IDRASRRISLSIKAREMEEEK 537


>gi|254502583|ref|ZP_05114734.1| ribosomal protein S1 [Labrenzia alexandrii DFL-11]
 gi|222438654|gb|EEE45333.1| ribosomal protein S1 [Labrenzia alexandrii DFL-11]
          Length = 558

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           + +A +  ++    I N++    +        F PR ++   P   +  ++         
Sbjct: 97  LEVAFEANEKVNGQIFNQVKGGFTVDLDGAVAFLPRSQVDIRPVRDVTPLMHTPQPFQIL 156

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +++          G + ++   + E   A +    +  + E + + +G V  + D+GAF
Sbjct: 157 KMDKRR--------GNIVVSRRVVLEETRAEQRSELVQSLEEGHTV-EGVVKNITDYGAF 207

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+H++ ++  R+   S+V+  G TV V+++  + +  +I L MK ++ +  
Sbjct: 208 VDL-GGIDGLLHVTDIAWRRINHPSEVLTIGQTVKVQIIRVNQETHRISLGMKQLEADPW 266



 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 264 DPWDGIEAKYPIEAKFSGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K   QN  
Sbjct: 324 SQEVEVMILEVDPVKRRISLGLKQTLQNPW 353



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +   +N   +G+V    +FG F+   G  DG+VH+S L   R   +  +  K
Sbjct: 350 QNPWDAFAEQFPINTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEYK 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K +  + 
Sbjct: 410 KGDMVKAIVLDVDVEKERISLGIKQLSGDP 439



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
            M          N I   +V+++ D G  V          V  + LS +R  +  +    
Sbjct: 439 PMEAGAAGEIRKNAIVTCEVIEIKDGGLDVKIADSDLTAFVRRADLSRDRDEQRPEKFSV 498

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD    ++  FD +  ++  S+K ++    K  V
Sbjct: 499 GDKFDARITQFDKKTRRVSASIKALEIAEEKEAV 532


>gi|254470844|ref|ZP_05084247.1| ribosomal protein S1 [Pseudovibrio sp. JE062]
 gi|211959986|gb|EEA95183.1| ribosomal protein S1 [Pseudovibrio sp. JE062]
          Length = 564

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 102/257 (39%), Gaps = 31/257 (12%)

Query: 446 LALMDAG------VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           LA++D G      VP+ +  A    G +  GD+  +       E     M         G
Sbjct: 41  LAVIDVGLKVEGRVPLKEFGAKGRDGEMSVGDEVEV-----YLERVENAM---------G 86

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
              +  D      S   + +A +  ++    I N++    +        F PR ++   P
Sbjct: 87  EAVLSRDKARREESWVRLEVAFEAGEKVTGQIFNQVKGGFTVDLDGAVAFLPRSQVDIRP 146

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              +  ++          +++          G + ++  ++ E   A +    +  + E 
Sbjct: 147 VRDVTPLMHTPQPFQILKMDKRR--------GNIVVSRRTVLEETRAEQRSELVQSLEEG 198

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + +G V  + D+GAFV   G  DGL+H++ ++  R+   S+V+  G TV V+++  + 
Sbjct: 199 QTV-EGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRINHPSEVLTIGQTVKVQIVRVNQ 256

Query: 679 DRGKIKLSMKVVDQNTG 695
           +  +I L MK ++ +  
Sbjct: 257 ETHRISLGMKQLETDPW 273



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     ++  + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 271 DPWDGIEAKYPLDAKFSGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 330

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D  + +I L +K   QN  +
Sbjct: 331 SQEVEVVILEVDASKRRISLGLKQTLQNPWE 361



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +      +N   +G+V    +FG F+   G  DG+VH+S L   R   +  +  K
Sbjct: 357 QNPWEAFAQQYPINATVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEYK 416

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K +D + 
Sbjct: 417 KGDVVKAVVLDVDVEKERISLGIKQLDADP 446



 Score = 41.1 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I K +V ++ D G  V    G     +  + LS ER  +       GD +  ++  FD +
Sbjct: 458 IVKCEVTEIKDGGLDVKLVDGDLSAFIRRADLSRERGEQDPTRFNVGDVIEARVTQFDKK 517

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             ++ +S+K ++    K  V
Sbjct: 518 TRRVGVSIKALEIAEEKEAV 537


>gi|298504349|gb|ADI83072.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter sulfurreducens KN400]
          Length = 761

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++              AA     +     +   + +G V  V  FGAFV     +DG
Sbjct: 616 DIMEELKKPGRDPREEFRTAAFRDDVTEIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           LVH+S LS + V   ++ V+ G  V VK+L  D  R +I LS++ 
Sbjct: 676 LVHVSHLSVKFVKDPAEAVRVGQVVQVKVLSVDVQRKRISLSIRE 720


>gi|294498968|ref|YP_003562668.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|295704292|ref|YP_003597367.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294348905|gb|ADE69234.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
 gi|294801951|gb|ADF39017.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 145

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D +K G  + VK+++
Sbjct: 3   VEVGSKVQGKVTGITNFGAFVELPGGQTGLVHISEVADSYVKDINDHLKVGQEIEVKVVN 62

Query: 677 FDDRGKIKLSMKVVDQNTGKP 697
            +  GKI LS+K       +P
Sbjct: 63  -EKDGKIGLSIKKAIDKPERP 82


>gi|253998815|ref|YP_003050878.1| 30S ribosomal protein S1 [Methylovorus sp. SIP3-4]
 gi|313200902|ref|YP_004039560.1| 30S ribosomal protein S1 [Methylovorus sp. MP688]
 gi|253985494|gb|ACT50351.1| ribosomal protein S1 [Methylovorus sp. SIP3-4]
 gi|312440218|gb|ADQ84324.1| ribosomal protein S1 [Methylovorus sp. MP688]
          Length = 592

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A+ +++  +  I   +   L+     +  F P      +    +++     GK    
Sbjct: 130 LENAMNESRIIKGMINGRVKGGLTVMVNSIRAFLPGSL---VDLRPVKDTTPFEGKEWDF 186

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N   +  V   +     + A RE +       +   + KG V  + D+GAF
Sbjct: 187 KVIKLDRKRN---NVVVSRRAVLEESMGADREALLGS---LKEGAVVKGIVKNITDYGAF 240

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ L+  RV   S+V+  G+ V  K+L FD ++ ++ L +K +  +  
Sbjct: 241 VDL-GGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILKFDQEKNRVSLGIKQLGDDPW 299



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++T    V     G+V  + D+GAFV      +GLVH+S++    +    + + + 
Sbjct: 297 DPWVALTRRYPVGTRLFGKVTNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNVHPAKIAQL 356

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D DR ++ L MK    N    
Sbjct: 357 GDEVEVMILEIDEDRRRLSLGMKQCQVNPWDE 388



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +I  +   G +V   I+E       ID+D           ++              
Sbjct: 348 VHPAKIAQL---GDEVEVMILE-------IDEDRRRLSLGMKQCQVN----PWDEFAATH 393

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +      GQ+  + DFG F+   G  DGLVH+S LS  +   +     K+GD V   +L 
Sbjct: 394 KKGDKVSGQIKSITDFGVFIGLPGGIDGLVHLSDLSWNQTGEEAIRNFKKGDEVAAVVLA 453

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D ++ +I L +K +D + 
Sbjct: 454 IDVEKERISLGVKQLDNDP 472



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T   +   I  G V  V   GA +   G  +G +  S+++ E++   +  +KEG
Sbjct: 471 DPFSAYTTTNDKGAIVTGTVKSVDAKGAVITLDGEVEGYLRASEIAREKIEDATTALKEG 530

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
             V  ++L+ D + + I LS+K  D
Sbjct: 531 QEVEARILNIDRKNRSINLSIKAKD 555


>gi|229492760|ref|ZP_04386561.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
 gi|229320419|gb|EEN86239.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
          Length = 495

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDALVKVIDIDLERRRISLSLKQANED 368



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 167 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFV 226

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 227 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWR 285



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T  +V I+D G+         +  AA +      +      I +G +VKV      +   
Sbjct: 7   TSPQVAINDIGS-------AEDFLAAIDATIKYFND---GDIVEGTIVKVDRDEVLLDIG 56

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
              +G++   +LS +     ++VV  GD V   +L   D  G++ LS K   
Sbjct: 57  YKTEGVIPSRELSIKHDVDPNEVVSVGDAVEALVLTKEDKEGRLILSKKRAQ 108


>gi|93004967|ref|YP_579404.1| RNA binding S1 [Psychrobacter cryohalolentis K5]
 gi|92392645|gb|ABE73920.1| RNA binding S1 [Psychrobacter cryohalolentis K5]
          Length = 840

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + SI D+ E   + +G V  V  FG F+     +DGLVHISQ++ + VA   + VK 
Sbjct: 672 REDVNSIKDLSEGMTL-EGVVTNVTAFGCFIDVGVHQDGLVHISQMANDFVADPMNRVKP 730

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V+++  D+ RG+I  SMK   +   +P
Sbjct: 731 GDIVSVRVISIDEKRGRIGFSMKPEAEKPARP 762


>gi|331212367|ref|XP_003307453.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309297856|gb|EFP74447.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 308

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 94/244 (38%), Gaps = 27/244 (11%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRT----HGSSLFIRGDTQAI----------- 349
            ++    +R+D R    +R I     +L          +    G T+ I           
Sbjct: 21  ELLSSGGLRLDNRRPYELRSIDF--NILPNPPVGCDSVARVEHGLTKLIGFVSGPRDSVE 78

Query: 350 ----VVVTLGTR---EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG 402
               V  TLG          +++ +  Q     +H +  P ++ +  ++G   ++     
Sbjct: 79  SNRTVATTLGNPTSNSASSNLNNNNNNQNGSISVHISTTPFSSIDRKKIGRSDKKFADLA 138

Query: 403 RLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
           +  +    PV+        T+ I  ++ + DG+   A +  ++LAL+ AGV IS  V  +
Sbjct: 139 QAIQNTFEPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDYVLSV 198

Query: 463 AMGLVKDGDDFIILSDISGDED-HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           ++G +        L D++  E   L ++   V      +T +Q+D +I  ++   ++   
Sbjct: 199 SVGALS--TPSCPLLDLTNSEQTDLPNLTIAVLPRTQKLTLLQLDTRINILTFESLLEIG 256

Query: 522 QQAK 525
            +A 
Sbjct: 257 LEAC 260


>gi|229827331|ref|ZP_04453400.1| hypothetical protein GCWU000182_02719 [Abiotrophia defectiva ATCC
           49176]
 gi|229788269|gb|EEP24383.1| hypothetical protein GCWU000182_02719 [Abiotrophia defectiva ATCC
           49176]
          Length = 716

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTV 670
                 +   + KG V  V+DFGAFV     +DGLVHIS+LS  + V    +VV  GD V
Sbjct: 634 MDMKDLKEGMVMKGTVRNVIDFGAFVDIGVHQDGLVHISELSDKKFVKHPLEVVSVGDIV 693

Query: 671 WVKLLDFD-DRGKIKLSMKV 689
            VK++  D  + +I LS+K 
Sbjct: 694 DVKVIGVDIPKKRISLSIKQ 713


>gi|303238373|ref|ZP_07324908.1| Tex-like protein-like protein [Acetivibrio cellulolyticus CD2]
 gi|302594077|gb|EFL63790.1| Tex-like protein-like protein [Acetivibrio cellulolyticus CD2]
          Length = 718

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  V DFGAFV     +DGLVHIS+L    V    +VV  GD V V++LD +  
Sbjct: 647 MVLTGTVRNVADFGAFVDIGVHQDGLVHISELCDRYVKSPMEVVAVGDIVKVRILDVEVQ 706

Query: 680 RGKIKLSMKVVD 691
           R +I LSMK ++
Sbjct: 707 RKRISLSMKEIN 718


>gi|262370700|ref|ZP_06064025.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314500|gb|EEY95542.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 788

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 20/140 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           ++++IG        I+ Q  A+   D+   +      L+E+E               RE 
Sbjct: 583 VKDIIGNS-----EIIRQVNAEEFADEKFGLPTIQDVLSELEKPGRDPRPEFRTAKFRED 637

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I  +  + E  ++ +G V  V +FGAFV     +DGLVHIS+L+ E VA    VVK G  
Sbjct: 638 ITEVAQLTEGMQL-EGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVADPHKVVKPGQI 696

Query: 670 VWVKLLDFD-DRGKIKLSMK 688
           V V++L  D +R ++ LSM+
Sbjct: 697 VQVRVLTVDAERNRVNLSMR 716


>gi|229170912|ref|ZP_04298515.1| RNA binding S1 domain protein [Bacillus cereus MM3]
 gi|228612578|gb|EEK69797.1| RNA binding S1 domain protein [Bacillus cereus MM3]
          Length = 162

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|39995345|ref|NP_951296.1| S1 RNA-binding domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39982107|gb|AAR33569.1| S1 RNA binding domain protein [Geobacter sulfurreducens PCA]
          Length = 761

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++              AA     +     +   + +G V  V  FGAFV     +DG
Sbjct: 616 DIMEELKKPGRDPREEFRTAAFRDDVTEIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           LVH+S LS + V   ++ V+ G  V VK+L  D  R +I LS++ 
Sbjct: 676 LVHVSHLSVKFVKDPAEAVRVGQVVQVKVLSVDVQRKRISLSIRE 720


>gi|261207579|ref|ZP_05922264.1| ribosomal protein S1 [Enterococcus faecium TC 6]
 gi|289565091|ref|ZP_06445544.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
 gi|260077962|gb|EEW65668.1| ribosomal protein S1 [Enterococcus faecium TC 6]
 gi|289163098|gb|EFD10945.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
          Length = 409

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 278 PWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 337

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 338 EVKVKVLEIHPEEHRIALSIKALEEKPA 365



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 169 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 227

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SDV+   D V VK+L  + ++ ++ LS+K         I
Sbjct: 228 GLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEI 282



 Score = 42.2 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
                E   + E         +V  + KG+V+ + D    V   G   +G+V   +LST 
Sbjct: 4   FDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTL 63

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
            V   S+VVK GD + + ++    + K      LS + +D
Sbjct: 64  PVEDISEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 103


>gi|257884883|ref|ZP_05664536.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
 gi|257820721|gb|EEV47869.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
          Length = 417

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 286 PWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 345

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 346 EVKVKVLEIHPEEHRIALSIKALEEKPA 373



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 177 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 235

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SD++   D V VK+L  + ++ ++ LS+K         I
Sbjct: 236 GLVHVSEISHSHVAKPSDLLAVNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEI 290



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           V        E   + E         +V  + KG+V+ + D    V   G   +G+V   +
Sbjct: 8   VMTEFDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKE 67

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
           LST  V   S+VVK GD + + ++    + K      LS + +D
Sbjct: 68  LSTLPVEDISEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 111


>gi|118593758|ref|ZP_01551127.1| 30S ribosomal protein S1 [Stappia aggregata IAM 12614]
 gi|118433668|gb|EAV40331.1| 30S ribosomal protein S1 [Stappia aggregata IAM 12614]
          Length = 558

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 31/257 (12%)

Query: 446 LALMDAG------VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           LA++D G      VP+ +  A    G +K GD+  +   +   E+ L            G
Sbjct: 34  LAVIDVGLKVEGRVPLKEFGAKGRDGEMKVGDEVEV--YLERVENAL------------G 79

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
              +  +      S   + +A +  ++    I N++    +        F PR ++   P
Sbjct: 80  EAVLSREKARREESWVRLEVAFEANEKVTGQIFNQVKGGFTVDLDGAVAFLPRSQVDIRP 139

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              +  ++          +++          G + ++   + E   A +    +  + E 
Sbjct: 140 VRDVTPLMHTPQPFQILKMDKRR--------GNIVVSRRVVLEETRAEQRSELVQSLEEG 191

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
           + + +G V  + D+GAFV   G  DGL+H++ ++  R+   S+V+  G TV V+++  + 
Sbjct: 192 HTV-EGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRINHPSEVLTIGQTVKVQIIRVNQ 249

Query: 679 DRGKIKLSMKVVDQNTG 695
           +  +I L MK ++ +  
Sbjct: 250 ETHRISLGMKQLETDPW 266



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 264 DPWDGIEAKYPIEAKFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K   QN  
Sbjct: 324 SQEVEVMILEVDPVKRRISLGLKQTLQNPW 353



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +   +    +G+V    +FG F+   G  DG+VH+S L   R   +  +  K
Sbjct: 350 QNPWDAFAEQFPIGTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFK 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D D+ +I L +K +  + 
Sbjct: 410 KGDMVKAVVLDVDVDKERISLGIKQLSGDP 439



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 2/133 (1%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
            G +VI    +    K  + D    K   S   +  +   M          N +   +V+
Sbjct: 400 PGEQVIEEFKKGDMVKAVVLDVDVDKERISLGIKQLSGDPMESGAAGELRKNSVVTCEVI 459

Query: 629 KVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLS 686
           ++ D G  V          +  + LS +R  +  +    GD    ++  FD +  ++ +S
Sbjct: 460 EIKDGGLDVKIADSDLTAFIRRTDLSRDREEQRPERYSVGDKFDARITQFDKKTRRVTVS 519

Query: 687 MKVVDQNTGKPIV 699
           +K ++    K  V
Sbjct: 520 IKALEIAEEKEAV 532


>gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain)
           [Burkholderia rhizoxinica HKI 454]
          Length = 801

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAF+     +DGLVH+S +ST+ V    +VVK G  V VK+L+ D  
Sbjct: 680 MILEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFVKDPHEVVKAGQVVTVKVLEVDLK 739

Query: 680 RGKIKLSMKVVD 691
           R +I L+M++ D
Sbjct: 740 RQRISLTMRLSD 751


>gi|159905922|ref|YP_001549584.1| RNA-binding S1 domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159887415|gb|ABX02352.1| RNA binding S1 domain protein [Methanococcus maripaludis C6]
          Length = 713

 Score = 88.0 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            +  +++   +  G   +  I+++      +  +D    +  S + E+E  +E       
Sbjct: 588 KVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKE------- 640

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 I KG V  ++DFGAF+      DGL HIS+++   +    DV+  GD V V ++
Sbjct: 641 ----GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVMVM 696

Query: 676 DFD-DRGKIKLSMK 688
           D D D+ ++ LS+K
Sbjct: 697 DIDFDKKRVSLSIK 710


>gi|126653373|ref|ZP_01725477.1| ribosomal protein S1, putative [Bacillus sp. B14905]
 gi|126589889|gb|EAZ84020.1| ribosomal protein S1, putative [Bacillus sp. B14905]
          Length = 378

 Score = 88.0 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V ++  FGAFV      +GLVHISQ++ + +    + +KEG  V VK+LD + + 
Sbjct: 274 ILDGKVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQVKVLDVNAED 333

Query: 681 GKIKLSMKVVDQNTGKPIV 699
           G++ LS+K + +N     V
Sbjct: 334 GRLALSIKELLENPEAEEV 352



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   D    ++  S  A +E+ +   +       +   +  G+V ++  FGAF+   G 
Sbjct: 150 KIVELDKEKNRLILSHRAVVESEKASQKQNVINQIKAGDVLDGKVQRLASFGAFIDL-GG 208

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            DGLVHISQ+S E V+  S+V+ EG  V VK+L  D    +I LS+K         I
Sbjct: 209 IDGLVHISQVSHEHVSDVSEVLSEGQGVTVKVLSVDPANERISLSIKETIPGPWSNI 265



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E +           I KG   +V +    V   GA  DG+V IS+LS+  + K SDV+  
Sbjct: 3   EEMNYAEQTFNEGDIVKGIAEQVDEKAVSVSIPGAPFDGIVPISELSSLHIEKASDVISV 62

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVD 691
           GD + + +   ++   + LS + VD
Sbjct: 63  GDELDLMITKVEEENFV-LSKRKVD 86


>gi|30260252|ref|NP_842629.1| hypothetical protein BA_0060 [Bacillus anthracis str. Ames]
 gi|42779140|ref|NP_976387.1| hypothetical protein BCE_0059 [Bacillus cereus ATCC 10987]
 gi|47525314|ref|YP_016663.1| hypothetical protein GBAA_0060 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569910|ref|ZP_00240577.1| S1 RNA-binding domain protein [Bacillus cereus G9241]
 gi|49183095|ref|YP_026347.1| hypothetical protein BAS0060 [Bacillus anthracis str. Sterne]
 gi|49479983|ref|YP_034414.1| hypothetical protein BT9727_0056 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145156|ref|YP_081673.1| hypothetical protein BCZK0056 [Bacillus cereus E33L]
 gi|118475832|ref|YP_892983.1| hypothetical protein BALH_0058 [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872545|ref|ZP_02217177.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167635120|ref|ZP_02393437.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|167641518|ref|ZP_02399766.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|170688881|ref|ZP_02880083.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|170707597|ref|ZP_02898050.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|190568990|ref|ZP_03021891.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036399|ref|ZP_03103796.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196041758|ref|ZP_03109048.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
 gi|196047359|ref|ZP_03114572.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|206977922|ref|ZP_03238809.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217957637|ref|YP_002336179.1| hypothetical protein BCAH187_A0070 [Bacillus cereus AH187]
 gi|218901263|ref|YP_002449097.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|222093831|ref|YP_002527880.1| hypothetical protein BCQ_0068 [Bacillus cereus Q1]
 gi|225862114|ref|YP_002747492.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
 gi|227812735|ref|YP_002812744.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228912801|ref|ZP_04076449.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925315|ref|ZP_04088412.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931564|ref|ZP_04094471.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943868|ref|ZP_04106254.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983317|ref|ZP_04143531.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089193|ref|ZP_04220475.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|229136908|ref|ZP_04265536.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|229153840|ref|ZP_04281971.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|229182456|ref|ZP_04309708.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|229194452|ref|ZP_04321256.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|229600529|ref|YP_002864713.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
 gi|254682312|ref|ZP_05146173.1| hypothetical protein BantC_00473 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724202|ref|ZP_05185987.1| hypothetical protein BantA1_17303 [Bacillus anthracis str. A1055]
 gi|254735463|ref|ZP_05193171.1| hypothetical protein BantWNA_09911 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744635|ref|ZP_05202314.1| hypothetical protein BantKB_27155 [Bacillus anthracis str. Kruger
           B]
 gi|254756340|ref|ZP_05208369.1| hypothetical protein BantV_28077 [Bacillus anthracis str. Vollum]
 gi|254762396|ref|ZP_05214238.1| hypothetical protein BantA9_28291 [Bacillus anthracis str.
           Australia 94]
 gi|300119155|ref|ZP_07056856.1| hypothetical protein BCSJ1_22210 [Bacillus cereus SJ1]
 gi|301051798|ref|YP_003790009.1| S1 RNA binding domain-containing protein [Bacillus anthracis CI]
 gi|30253573|gb|AAP24115.1| S1 RNA binding domain protein [Bacillus anthracis str. Ames]
 gi|42735055|gb|AAS38995.1| S1 RNA binding domain protein [Bacillus cereus ATCC 10987]
 gi|47500462|gb|AAT29138.1| S1 RNA binding domain protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553444|gb|EAL11828.1| S1 RNA-binding domain protein [Bacillus cereus G9241]
 gi|49177022|gb|AAT52398.1| S1 RNA binding domain protein [Bacillus anthracis str. Sterne]
 gi|49331539|gb|AAT62185.1| S1-type RNA-binding domain protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51978625|gb|AAU20175.1| S1-type RNA-binding domain protein [Bacillus cereus E33L]
 gi|118415057|gb|ABK83476.1| S1-type RNA-binding domain protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711673|gb|EDR17218.1| S1 RNA binding domain protein [Bacillus anthracis str. A0488]
 gi|167510503|gb|EDR85901.1| S1 RNA binding domain protein [Bacillus anthracis str. A0193]
 gi|167529594|gb|EDR92344.1| S1 RNA binding domain protein [Bacillus anthracis str. A0442]
 gi|170127593|gb|EDS96467.1| S1 RNA binding domain protein [Bacillus anthracis str. A0389]
 gi|170667105|gb|EDT17866.1| S1 RNA binding domain protein [Bacillus anthracis str. A0465]
 gi|190559914|gb|EDV13898.1| S1 RNA binding domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991029|gb|EDX55000.1| S1 RNA binding domain protein [Bacillus cereus W]
 gi|196021761|gb|EDX60455.1| S1 RNA binding domain protein [Bacillus cereus 03BB108]
 gi|196027378|gb|EDX65995.1| S1 RNA binding domain protein [Bacillus cereus NVH0597-99]
 gi|206743828|gb|EDZ55248.1| S1 RNA binding domain protein [Bacillus cereus H3081.97]
 gi|217063105|gb|ACJ77355.1| S1 RNA binding domain protein [Bacillus cereus AH187]
 gi|218535689|gb|ACK88087.1| S1 RNA binding domain protein [Bacillus cereus AH820]
 gi|221237878|gb|ACM10588.1| S1-type RNA-binding domain protein [Bacillus cereus Q1]
 gi|225786141|gb|ACO26358.1| S1 RNA binding domain protein [Bacillus cereus 03BB102]
 gi|227003771|gb|ACP13514.1| S1 RNA binding domain protein [Bacillus anthracis str. CDC 684]
 gi|228589042|gb|EEK47056.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|228601036|gb|EEK58604.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|228629644|gb|EEK86340.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|228646573|gb|EEL02779.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|228694156|gb|EEL47837.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|228776431|gb|EEM24783.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815825|gb|EEM62060.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828116|gb|EEM73843.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834362|gb|EEM79902.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846861|gb|EEM91865.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229264937|gb|ACQ46574.1| S1 RNA binding domain protein [Bacillus anthracis str. A0248]
 gi|298723477|gb|EFI64218.1| hypothetical protein BCSJ1_22210 [Bacillus cereus SJ1]
 gi|300373967|gb|ADK02871.1| S1 RNA binding domain protein [Bacillus cereus biovar anthracis
           str. CI]
 gi|324324051|gb|ADY19311.1| hypothetical protein YBT020_00290 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 160

 Score = 88.0 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|317154744|ref|YP_004122792.1| 30S ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944995|gb|ADU64046.1| ribosomal protein S1 [Desulfovibrio aespoeensis Aspo-2]
          Length = 623

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I +       + G +  + D+GAFV      +GLVHIS++S  R +   S +VK 
Sbjct: 279 DPWENIAEKYPEGARFTGVITNLADYGAFVELENGVEGLVHISEMSWTRKLRHPSQMVKV 338

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +L  D D+ +I L MK +  N  
Sbjct: 339 GDEVEVVVLGVDQDKKRISLGMKQISPNPW 368



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 11/186 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +   +++       IL  +    +     +  F P   +   P   +  ++       
Sbjct: 110 DKLEELMEKDGEVIGRILRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALV------- 162

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               +    K+N      +      L E+ +  E    + D  E  +   G+V  + ++G
Sbjct: 163 NKKFDFKILKINRRRSNVIVSRRVLLEEMRS--EQRDKLLDTLEDGQSVTGKVKNITEYG 220

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            F+   G  DGL+HI+ +S +R+    ++V+ GD + +K+L FD D  K+ L +K +  +
Sbjct: 221 VFIDL-GGLDGLLHITDMSWKRIKHPKEMVQLGDELELKILSFDRDAQKVSLGLKQLVSD 279

Query: 694 TGKPIV 699
             + I 
Sbjct: 280 PWENIA 285



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +     V ++  G V  + DFG FV      +GLVH+S++S +++   S++ KEG
Sbjct: 453 DPWTQVPGKYPVGQMITGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKIKSPSEIYKEG 512

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVVDQNT 694
           DT+  K++    D+R ++ LS+K   +  
Sbjct: 513 DTIEAKVIHVSADER-RLGLSIKQTKEEA 540



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 101/252 (40%), Gaps = 24/252 (9%)

Query: 463 AMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
             G VK+  ++ +  D+ G +   H+  M +K       +  +  ++++  +S +     
Sbjct: 209 VTGKVKNITEYGVFIDLGGLDGLLHITDMSWKRIKHPKEMVQLGDELELKILSFD---RD 265

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            Q+   G   ++++  + ++E   +   FT  +  +A     +    G+ G V   I E 
Sbjct: 266 AQKVSLGLKQLVSDPWENIAEKYPEGARFTGVITNLADYGAFVELENGVEGLV--HISEM 323

Query: 581 TGAK--------VNIDDDGTVKIASSSLAE-----IEAAREMIRSITDVPEVNK--IYKG 625
           +  +        V + D+  V +      +                    +  +  + +G
Sbjct: 324 SWTRKLRHPSQMVKVGDEVEVVVLGVDQDKKRISLGMKQISPNPWDVVAEKYPEGTVLEG 383

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            +  + +FG F+      DGL+H+S +S  +++   S+V K GD V  K+L  D +  K 
Sbjct: 384 AIKNITEFGVFIGIEEGIDGLIHVSDISWTKKIRHPSEVYKSGDAVQAKVLTVDKENEKF 443

Query: 684 KLSMKVVDQNTG 695
            L +K + ++  
Sbjct: 444 TLGVKQLTEDPW 455


>gi|259501961|ref|ZP_05744863.1| S1-type RNA-binding domain protein [Lactobacillus antri DSM 16041]
 gi|259170138|gb|EEW54633.1| S1-type RNA-binding domain protein [Lactobacillus antri DSM 16041]
          Length = 165

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 43/80 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHISQ+S + +    DV+  GDTV  K+   
Sbjct: 4   EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDTVTAKVTRI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LSMK    +  K 
Sbjct: 64  GDDGKIALSMKAAAPHEQKE 83


>gi|124266982|ref|YP_001020986.1| putative transcription accessory protein [Methylibium
           petroleiphilum PM1]
 gi|124259757|gb|ABM94751.1| putative transcription accessory protein [Methylibium
           petroleiphilum PM1]
          Length = 793

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V  V  FGAFV     +DGLVH+SQL+ + V    ++VK GD V VK+L+ D  
Sbjct: 667 MTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLANKFVNDAREIVKTGDIVKVKVLEVDLA 726

Query: 680 RGKIKLSMK 688
           RG+I L+MK
Sbjct: 727 RGRISLTMK 735


>gi|304437100|ref|ZP_07397063.1| general stress protein 13 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370051|gb|EFM23713.1| general stress protein 13 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 153

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + +FGAFV     + GL+HIS+++   V+   D +KE D V VK+L  DDRGKI LS+
Sbjct: 20  TGITNFGAFVELPEGKTGLIHISEVADVYVSDVHDFLKEHDKVKVKVLTVDDRGKIGLSI 79

Query: 688 KVVD 691
           K + 
Sbjct: 80  KALQ 83


>gi|306820494|ref|ZP_07454127.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551408|gb|EFM39366.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 714

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 143/359 (39%), Gaps = 48/359 (13%)

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI-----GHGRLARRAIH 410
           +RE EQ V  +   + N +    +    +    S++G    +++     G   +ARR   
Sbjct: 380 SRESEQIVADIVKQKENVYYTIVSEAGASVYSASKLGEEELKDMNVSLRGAVSIARRIQD 439

Query: 411 PVLPQTAQFPYTL---------------RIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
           P+       P ++                ++S + E + +     +  +S +       I
Sbjct: 440 PMSELVKIDPKSIGVGQYQHDVNQKRLSEVLSNVVEDNVNKVGIDLNTASYS-------I 492

Query: 456 SKPVAGIAMGLVKDGDDFIILS-DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
              VAGI   + K+   +   +      E+ L       +  +     +++      +  
Sbjct: 493 LGYVAGITPSIAKNIVKYRDNAGKFKNKEELLKVTRLGQSCFEQCAGFLRVKEGDNILDN 552

Query: 515 N-IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             I   A  +  +     L E+  V  +S   + +FT +++  +     + + + +G   
Sbjct: 553 TGIHPEAYDKTYK-----LLEILDVDIQSEDFIEDFTRKIDKTS--QKDLSDKLEIGMPT 605

Query: 574 IRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           +  I+++     ++I D+  +             R  +  + D+ E   I KG V  V++
Sbjct: 606 LIDIIKELKKPGLDIRDEKNISPVL---------RSDVLKLEDLSEG-MILKGTVRNVLE 655

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           FGAFV      DGLVHISQLS + +    +VV  GD V VK++  D DR K+ L+M+ +
Sbjct: 656 FGAFVDIGVKNDGLVHISQLSDKFIKNPMEVVSIGDIVNVKVIGIDLDRKKVSLTMRGI 714


>gi|312131252|ref|YP_003998592.1| ssu ribosomal protein s1p [Leadbetterella byssophila DSM 17132]
 gi|311907798|gb|ADQ18239.1| SSU ribosomal protein S1P [Leadbetterella byssophila DSM 17132]
          Length = 604

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N  +D  V      + +   ++   + I   
Sbjct: 156 QIDVKPIRDF----DVFVGKRMEVKVVKINHTNDNVVVSHKVLIEKDLESQ--RQQILTN 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  + +FG F+   G  DGL+HI+ +S  RV   ++V+   D + V +LD
Sbjct: 210 LEKGQVLEGVVKNITNFGVFIDL-GGVDGLLHITDISWGRVNHPNEVLNLDDKIKVVVLD 268

Query: 677 FDD-RGKIKLSMKVVDQNTGKPIV 699
           FDD + +I L MK ++ +    + 
Sbjct: 269 FDDEKKRISLGMKQLEAHPWDSLA 292



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + +FG F+      DGLVH+S LS  +++   SD VK GDT+ V +L+ D + 
Sbjct: 390 HTGTVRNLTNFGLFLELEEGIDGLVHVSDLSWTKKIKHPSDFVKIGDTLEVVVLELDVEN 449

Query: 681 GKIKLSMKVVDQNTG 695
            ++ LS K +++N  
Sbjct: 450 RRLALSHKHIEENPW 464



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ DD+           E         S+    EV     G++V + D+GAF+      +
Sbjct: 267 LDFDDEKKRISLGMKQLEAH----PWDSLAQNLEVGSKVSGKIVNIADYGAFLELKPGVE 322

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  + +   SD ++ GD +   +L  D +  K+ L +K + ++  
Sbjct: 323 GLIHVSEMSWSQHLRNPSDFLQIGDEISAVVLTLDKEERKMSLGIKQLTEDPW 375


>gi|255525217|ref|ZP_05392159.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           carboxidivorans P7]
 gi|296188737|ref|ZP_06857124.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           carboxidivorans P7]
 gi|255511080|gb|EET87378.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           carboxidivorans P7]
 gi|296046664|gb|EFG86111.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
           carboxidivorans P7]
          Length = 641

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+VV+  +FGAFV      D LVHISQ+S +R+ K  D +K G+ +  K+L+ + + 
Sbjct: 569 IVLGKVVRFANFGAFVELEPGVDALVHISQISHKRINKPEDALKIGEEIKAKILEVNKEN 628

Query: 681 GKIKLSMKVVDQ 692
            KI LS+K VD+
Sbjct: 629 KKIGLSIKEVDE 640



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +     ++ + + +   L  +   +  F P   +     + + + IG   +V 
Sbjct: 379 KEIKEASENKISLKVLVKDAVKGGLVATYKGIRIFIPASHVELFHVNDLSSYIGKELEV- 437

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD-VPEVNKIYKGQVVKVMDF 633
             I+E        +D    +I +S    +++ +E+    T    E + + +G+V ++ +F
Sbjct: 438 -NIIEFK------EDRKGRRIVASRRELLKSEKEVKEEGTWNSLEKDTVVEGEVKRLTNF 490

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           GAFV      DGL+H+S++S  RV K  D +K G  V V +LD D 
Sbjct: 491 GAFVDV-QGVDGLLHVSEISWGRVEKPEDSLKIGKKVKVYILDIDK 535



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +   K+      E+      +        V ++  G V+ V +  AF++     DGL
Sbjct: 268 IIKEAISKMCEGKNLEMSEQLAYMEQNDRQIIVGQVITGTVITVNEKEAFLNIGYKSDGL 327

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           +  S+++ +     +D+++ G+ + VK++   ++ G + LS   + + + 
Sbjct: 328 LPKSEVTKDVNLNLADLIQVGNELEVKVIRRKNEDGYVVLSKIELQRESA 377


>gi|228898815|ref|ZP_04063098.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
 gi|228860840|gb|EEN05217.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
          Length = 161

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|299536388|ref|ZP_07049701.1| general stress protein 13 [Lysinibacillus fusiformis ZC1]
 gi|298728374|gb|EFI68936.1| general stress protein 13 [Lysinibacillus fusiformis ZC1]
          Length = 125

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    E+  +  G+V  +  +GAFV       GLVHIS+++   V   S+ +  G  V V
Sbjct: 1   MVKKYELGDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVEV 60

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTG 695
           K+L+ D+   KI LSM+ +     
Sbjct: 61  KILEIDEEAEKISLSMRALQDRPA 84


>gi|163938069|ref|YP_001642953.1| hypothetical protein BcerKBAB4_0056 [Bacillus weihenstephanensis
           KBAB4]
 gi|229009571|ref|ZP_04166798.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
 gi|229131069|ref|ZP_04259982.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|229165050|ref|ZP_04292846.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|163860266|gb|ABY41325.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228618435|gb|EEK75464.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|228652406|gb|EEL08330.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|228751715|gb|EEM01514.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
          Length = 161

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|294507814|ref|YP_003571872.1| 30S ribosomal protein S1 [Salinibacter ruber M8]
 gi|294344142|emb|CBH24920.1| 30S ribosomal protein S1 [Salinibacter ruber M8]
          Length = 876

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
                I +  + + + +G+VV + ++GAFV      +GLVHIS++S    +   S +V  
Sbjct: 437 HPWDQIGNKYDEDDVVEGKVVSITNYGAFVEIEKGIEGLVHISEMSWTRHIEHPSQMVSL 496

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  V VK+L+ D +  KI L MK ++ +  + I
Sbjct: 497 GQVVDVKILNIDQEERKISLGMKQLEPDPWEGI 529



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 4/126 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   +E    K+N +++  V      +       E  + I +  EV ++ +G V  ++DF
Sbjct: 320 LETRMEFKIVKLNPENENIVVSHRELIEHELE--EQRQEILEQLEVGQVLEGTVKNIVDF 377

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQ 692
           G F+   G  DGL+HI+ LS  RV+  S+VV+    + V +LD+ ++R +I L +K +  
Sbjct: 378 GVFIDL-GGVDGLLHITDLSWGRVSHPSEVVELDQELEVVVLDYEEERQRISLGLKQLRD 436

Query: 693 NTGKPI 698
           +    I
Sbjct: 437 HPWDQI 442



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 92/254 (36%), Gaps = 32/254 (12%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G VK+  DF +  D+ G +   H+  + +      S +  +  ++++  +         Q
Sbjct: 369 GTVKNIVDFGVFIDLGGVDGLLHITDLSWGRVSHPSEVVELDQELEVVVLDYE---EERQ 425

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   + +     +     +      +V  ++I        I  G + +  I E + 
Sbjct: 426 RISLGLKQLRDHPWDQIGNKYDEDDVVEGKV--VSITNYGAFVEIEKGIEGLVHISEMSW 483

Query: 583 AK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            +                   +NID +           E     +    I+D      + 
Sbjct: 484 TRHIEHPSQMVSLGQVVDVKILNIDQEERKISLGMKQLEP----DPWEGISDRYPAGTVL 539

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G V  + +FG FV      DGLVH+S LS  +++    D+V E   + V +L+ D +R 
Sbjct: 540 TGTVRNITNFGVFVEIEPGIDGLVHVSDLSWTKKIRHPGDMVDEEQELDVVILNIDEERR 599

Query: 682 KIKLSMKVVDQNTG 695
           +I L  K V  N  
Sbjct: 600 RISLGHKQVKTNPW 613



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G ++    E     +NID++           +            D  E      G+
Sbjct: 574 IRHPGDMVDEEQELDVVILNIDEERRRISLGHKQVKTN----PWDQFADAYEEGNDTTGE 629

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKL 685
           VV+V D G  V      +  V  S+L         +   EGD + ++++ FD   K I L
Sbjct: 630 VVRVEDKGLVVQLPLDVEAFVPGSELKNG-PKAFKNHYHEGDELELQVIRFDKDQKDIVL 688

Query: 686 S 686
           S
Sbjct: 689 S 689


>gi|258616519|ref|ZP_05714289.1| 30S ribosomal protein S1 [Enterococcus faecium DO]
 gi|260559045|ref|ZP_05831231.1| ribosomal protein S1 [Enterococcus faecium C68]
 gi|293556738|ref|ZP_06675301.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
 gi|293563396|ref|ZP_06677845.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
 gi|293568054|ref|ZP_06679392.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
 gi|294614847|ref|ZP_06694742.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
 gi|294618678|ref|ZP_06698212.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
 gi|294621936|ref|ZP_06701084.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
 gi|314942007|ref|ZP_07848868.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
 gi|314991835|ref|ZP_07857293.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
 gi|314995876|ref|ZP_07860963.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
 gi|260074802|gb|EEW63118.1| ribosomal protein S1 [Enterococcus faecium C68]
 gi|291589275|gb|EFF21085.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
 gi|291592309|gb|EFF23923.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
 gi|291595061|gb|EFF26404.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
 gi|291598485|gb|EFF29554.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
 gi|291601070|gb|EFF31359.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
 gi|291604657|gb|EFF34142.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
 gi|313589980|gb|EFR68825.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
 gi|313593646|gb|EFR72491.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
 gi|313599259|gb|EFR78104.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
          Length = 409

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 278 PWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 337

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 338 EVKVKVLEIHPEEHRIALSIKALEEKPA 365



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 169 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 227

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SDV+   D V VK+L  + ++ ++ LS+K         I
Sbjct: 228 GLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEI 282



 Score = 42.2 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
                E   + E         +V  + KG+V+ + D    V   G   +G+V   +LST 
Sbjct: 4   FDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTL 63

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
            V   S+VVK GD + + ++    + K      LS + +D
Sbjct: 64  PVEDISEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 103


>gi|229027908|ref|ZP_04184063.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
 gi|228733422|gb|EEL84249.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
          Length = 161

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|229028095|ref|ZP_04184244.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1271]
 gi|228733217|gb|EEL84050.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1271]
          Length = 656

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 129/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   ++  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 324 ESEEFIVDVLQNVKQEVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 383

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 384 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 443

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 444 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 502

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 503 YKNVELLLKSLGLSKDDVGQSQLQKSLEE------------VEISKLSEETGVGEPTLVD 550

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 551 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 600

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    D+V  G  V V + D D  +G++ LSM
Sbjct: 601 VDVGVKQDGLVHISKLSKQYVKHPLDIVSVGQIVKVWVDDIDTKKGRVALSM 652


>gi|257877994|ref|ZP_05657647.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
 gi|257881219|ref|ZP_05660872.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
 gi|257889807|ref|ZP_05669460.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
 gi|257892256|ref|ZP_05671909.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
 gi|314938007|ref|ZP_07845317.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
 gi|314948740|ref|ZP_07852112.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
 gi|314951758|ref|ZP_07854797.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
 gi|257812222|gb|EEV40980.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
 gi|257816877|gb|EEV44205.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
 gi|257826167|gb|EEV52793.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
 gi|257828635|gb|EEV55242.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
 gi|313596037|gb|EFR74882.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
 gi|313642582|gb|EFS07162.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
 gi|313644806|gb|EFS09386.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
          Length = 417

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 286 PWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 345

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 346 EVKVKVLEIHPEEHRIALSIKALEEKPA 373



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 177 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 235

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SDV+   D V VK+L  + ++ ++ LS+K         I
Sbjct: 236 GLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDTQPGPWSEI 290



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           V        E   + E         +V  + KG+V+ + D    V   G   +G+V   +
Sbjct: 8   VMTEFDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKE 67

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
           LST  V   S+VVK GD + + ++    + K      LS + +D
Sbjct: 68  LSTLPVEDISEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 111


>gi|302878374|ref|YP_003846938.1| 30S ribosomal protein S1 [Gallionella capsiferriformans ES-2]
 gi|302581163|gb|ADL55174.1| ribosomal protein S1 [Gallionella capsiferriformans ES-2]
          Length = 570

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K++   +  V    + L     A     S+ +  +   I KG V  + D+GAFV 
Sbjct: 162 EFKVIKLDRRRNNVVVSRRAVLEATMGA--DRESVMENLKEGAIVKGVVKNITDYGAFVD 219

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  DGL+HI+ L+  RV   S+V+  GD +  K+L FD ++ ++ L +K +  +  
Sbjct: 220 L-GGIDGLLHITDLAWRRVKHPSEVLTVGDEIEAKILKFDQEKNRVSLGIKQMGDDPW 276



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+G+FV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWNGLARRYPQGTRLFGKVTNLTDYGSFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQV 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D+ R +I L MK    N    
Sbjct: 334 GDEVEVMILEIDEQRRRISLGMKQCHSNPWDD 365



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P ++  V   G +V   I+E       ID+                            
Sbjct: 325 VHPSKVVQV---GDEVEVMILE-------IDEQRRRISLGMKQCHSN----PWDDFAINH 370

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           +     +GQ+  + DFG F+   G  DGLVH+S LS  +     ++V   K+GD V   +
Sbjct: 371 KKGDKVRGQIKSITDFGVFIGLDGDIDGLVHLSDLSWSQPG--EEMVRNFKKGDEVEAVV 428

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++ + 
Sbjct: 429 LAIDVERERISLGIKQMEGDP 449



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  V   GA V   G  +  +  S++S +RV      +KEGDTV   ++  
Sbjct: 458 EKGAIVNGVVKSVDAKGAVVTLPGDVEAYLKASEVSVDRVEDIRTHLKEGDTVKAMIISV 517

Query: 678 DDRGK-IKLSMKVV 690
           D + + I LS+K +
Sbjct: 518 DRKNRGISLSVKAL 531


>gi|314936391|ref|ZP_07843738.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80]
 gi|313655010|gb|EFS18755.1| ribosomal protein S1 [Staphylococcus hominis subsp. hominis C80]
          Length = 392

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+        ++  V ++  ++ + E   +    +  + 
Sbjct: 138 ISTDFIEDFSVFEGQTIRLKVEELDP-----ENNRVILSRKAVEQAENDVKKASLLDSLN 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  G  V VK+   
Sbjct: 193 EG-DVIKGKVARLTNFGAFVDI-GGVDGLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSV 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           + D  +I LS+K       + I
Sbjct: 251 EKDTERISLSIKDTLPTPFENI 272



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      N + +G+V+++ +FGAFV       GLVHIS+++ + +   S+V++ G 
Sbjct: 268 PFENIKGKFHENDVIEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNT 694
            V VK+L  D+   +I LS+K    N 
Sbjct: 328 QVSVKILGIDEDNERISLSIKATLPNE 354



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  GA+ +G++ ISQLST  +   S+++ E
Sbjct: 4   EFNESMINDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISE 63

Query: 667 GDTVWVKL--LDFDDRG 681
           GD +   +  ++ D+  
Sbjct: 64  GDEIEAYVTKIEIDEEN 80


>gi|114766578|ref|ZP_01445534.1| 30S ribosomal protein S1 [Pelagibaca bermudensis HTCC2601]
 gi|114541194|gb|EAU44246.1| 30S ribosomal protein S1 [Roseovarius sp. HTCC2601]
          Length = 553

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 94/259 (36%), Gaps = 23/259 (8%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           D G  +   V  I  G       + +   +   E        ++   D     ++     
Sbjct: 18  DEGSVVKGKVIAIEAGQAIIDVGYKMEGRVDLKEFANPGEAPEITVGDEVEVFLRAAENA 77

Query: 510 GG---ISENI---------MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            G   IS  +         +  A     R    I   +    +        F P  ++  
Sbjct: 78  RGEAVISREMARREEAWDRLEKAYADDARVEGAIFGRVKGGFTVDLGGAVAFLPGSQVDV 137

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
            P      ++G+        +++          G + ++  ++ E   A +    I ++ 
Sbjct: 138 RPVRDAGPLMGLKQPFQILKMDRRR--------GNIVVSRRAILEESRAEQRAEVIANLS 189

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+++  
Sbjct: 190 EGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKI 247

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           + +  +I L MK + ++  
Sbjct: 248 NKETHRISLGMKQLQEDPW 266



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVAVKYPLASVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVDVMVLEIDPAKRRVSLGLKQTMRNPWE 354



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R      ++        +G+V  + +FG F+   G  DG+VH+S LS  +R  +     +
Sbjct: 350 RNPWEVFSETHPEGTQVEGEVKNITEFGLFIGLDGEIDGMVHLSDLSWDQRGEEAIQEYR 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D D+ +I LS+K +
Sbjct: 410 KGDVVQAVVTEVDTDKERISLSIKAL 435



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V  + D G  V + G +   +  S LS +R  +  +    GD V V++ +
Sbjct: 447 VKRGSIVTVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVGDKVDVRVTN 505

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 506 IDSKTRRLGLSIKAREIAEEKEAV 529


>gi|301059712|ref|ZP_07200612.1| Tex-like protein N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300446189|gb|EFK10054.1| Tex-like protein N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 745

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +      +  E      G V  ++ FGAFV     +DGLVH+SQ++   V   ++V+K
Sbjct: 625 AFKEGIEKIEDLEPGMTLPGVVTNIVAFGAFVDIGVHQDGLVHVSQMADHFVKDPNEVIK 684

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
               V V++L  D +R +I LS+K  +   GK
Sbjct: 685 VYQKVSVRVLGVDLERKRISLSLKSENSGAGK 716


>gi|298506630|gb|ADI85353.1| ribosomal protein S1 [Geobacter sulfurreducens KN400]
          Length = 586

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 567 IGMGGKVIRGI--VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           +  GG + + I   ++          G + ++   L E E A     ++ ++ E     +
Sbjct: 163 LRPGGNLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTR-E 221

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+H++ +S  R+   S+++K GD + VK+L +D ++GKI
Sbjct: 222 GVVKNITDYGAFVDI-GGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKI 280

Query: 684 KLSMKVVDQNTG 695
            L +K +  +  
Sbjct: 281 SLGLKQITPDPW 292



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G+V  V DFG F+      +GLVH+S+LS E+VA   D    GD +   +L  DD   
Sbjct: 479 VRGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEK 538

Query: 682 KIKLSMKVVDQNTGK 696
           KI LS+K +     K
Sbjct: 539 KIALSVKALQAAAEK 553



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++    +V     G+VV + D+GAFV      +GLVH+S++S  +R+   SD++  
Sbjct: 290 DPWLAVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTV 349

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V   +L  D    +I L +K    N  
Sbjct: 350 GDEVETVVLGIDTGNRRISLGLKQAQANPW 379



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           +A       + +   V    +GQ+  + DFG F+      DGLVH+S +S  +R+    +
Sbjct: 373 QAQANPWTQLEEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGE 432

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V  +G TV   +L+ D +  ++ L +K +  +  
Sbjct: 433 VYAKGQTVQAVVLNVDAENERLSLGIKQLTPDPW 466


>gi|254518912|ref|ZP_05130968.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium sp.
           7_2_43FAA]
 gi|226912661|gb|EEH97862.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium sp.
           7_2_43FAA]
          Length = 635

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
                 +V+  G  +   I+E         D    +++ S  A        I      PE
Sbjct: 513 HVKSAESVLKKGQIIDVKIIEA--------DRENNRLSLSIKALTPEPWSNIEEKY--PE 562

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + +  G+VV++ DFGAFV      DGLVHIS+++ +R+    DV+K GD V   +L  D
Sbjct: 563 GSAVL-GKVVRISDFGAFVELEPGVDGLVHISKITHDRINNPGDVLKIGDEVKAIILSVD 621

Query: 679 -DRGKIKLSMKVVD 691
            +  KI LS+K  +
Sbjct: 622 AENKKIALSIKDAE 635



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 12/187 (6%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            N +       +   + I +   K +      +  F P  ++     +   N+IG   +V
Sbjct: 380 LNELESIFNNKEVFSVKIKDAKEKGIIGYYKGVRIFIPASQVDIRFSNDRSNLIGENLEV 439

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMD 632
                      ++   D   KI +S    +E  +++          V  + K +V +  +
Sbjct: 440 ---------RLIDFSLDNPSKIVASRRIILEEEKKVKEDAAWENINVGDVVKAEVKRFTN 490

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAF       DGL+H+SQ+S   V     V+K+G  + VK+++ D +  ++ LS+K + 
Sbjct: 491 FGAFADI-NGVDGLIHLSQISWSHVKSAESVLKKGQIIDVKIIEADRENNRLSLSIKALT 549

Query: 692 QNTGKPI 698
                 I
Sbjct: 550 PEPWSNI 556


>gi|229917405|ref|YP_002886051.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229468834|gb|ACQ70606.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 170

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV     + GLVHIS+++   V   ++V+  G  V VK+L+ 
Sbjct: 4   EVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKVLNV 63

Query: 678 DDRGKIKLSMKV-----VDQNTGKP 697
           ++ GKI LS+K      V +   +P
Sbjct: 64  ENDGKIGLSIKKAVDRPVSERPERP 88


>gi|187924504|ref|YP_001896146.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN]
 gi|187715698|gb|ACD16922.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN]
          Length = 782

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRIALTMRMDDE 729


>gi|157825908|ref|YP_001493628.1| 30S ribosomal protein S1 [Rickettsia akari str. Hartford]
 gi|157799866|gb|ABV75120.1| 30S ribosomal protein S1 [Rickettsia akari str. Hartford]
          Length = 568

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      + 
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLA 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V++    V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + +
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWEAL 283



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEALKEEFPVGKKMIGKVTNFADYGVFIELKDGLEGLVHASEISWLKSNQHPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K  D++   K+GD +  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGIDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             + ++ ++ L +K +  N 
Sbjct: 434 SINIEKEQVSLGIKQLLPNP 453



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I+D  +   I K  + +V D G  V       G +  ++LS E+  +  ++ K  +
Sbjct: 453 PYHEISDEYKKGTIVKALITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDE 512

Query: 669 TVWVKLLDFDDR-GKIKLSMKV 689
            +  K++  D   G+I LS+K 
Sbjct: 513 AIEAKVVSIDKSTGRILLSVKA 534


>gi|311071146|ref|YP_003976069.1| putative RNA helicase [Bacillus atrophaeus 1942]
 gi|310871663|gb|ADP35138.1| putative RNA helicase [Bacillus atrophaeus 1942]
          Length = 719

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 132/358 (36%), Gaps = 53/358 (14%)

Query: 356 TREDEQ-YVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ  VD L  T R+ + +  N       +  E++R   P  +      +  ARR  
Sbjct: 387 SRETEQFIVDVLKDTPRDIYYLIVNEAGASVYSASELAREEFPDLQVEERSAVSIARRLQ 446

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 447 DPLAELVKIDPKSVGVGQYQHDVSQKNLNDSLRFVVETVVNQVGVNVNTASAALLQYVAG 506

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDE---DHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           +SK VAG  +    +   F    ++ G                    G       +   G
Sbjct: 507 LSKSVAGNVVKKRDELGKFSTRKELKGIPRLGAKTYEQCIGFLRVPDG----TEPLDRTG 562

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I            K+ +L      +  L E   +L               +    + +G 
Sbjct: 563 IHPESYKETKSLLKKLQLTTEQIGTAELKEKISKL------------DLSETARELEIGE 610

Query: 572 KVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             ++ I EQ T  + +  D+    +  + + ++E  +E +             +G V  V
Sbjct: 611 ITLKDICEQLTRPERDPRDEVPKPLLKTDVLQLEDLKEGME-----------LQGTVRNV 659

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +DFGAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ LSM
Sbjct: 660 VDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDAQKGRVSLSM 717


>gi|307729263|ref|YP_003906487.1| Tex-like protein [Burkholderia sp. CCGE1003]
 gi|307583798|gb|ADN57196.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1003]
          Length = 781

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRIALTMRLDDE 729


>gi|118602599|ref|YP_903814.1| 30S ribosomal protein S1 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567538|gb|ABL02343.1| SSU ribosomal protein S1P [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 558

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 19/198 (9%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  +L E +    E  L+  E    +E +          I +GG     
Sbjct: 159 MDEIRNNIVISRKAVLQEANSADREILLEGLEEGKEIEGLVKNLADYGAFIDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE--------AAREMIRSITDVPEVN 620
               +    V     K+ I D   VK+ +    +I          A         +P   
Sbjct: 219 HITDISWQRVNHPSEKLTIGDKIIVKVLNYDKEKIRVSLGLKQLTASPWDNISDRLPIGK 278

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDD 679
           K+  G V  + D+GAFV      +GLVH+S++      A+ S +VK G  V V +LD  +
Sbjct: 279 KV-PGTVSNLTDYGAFVRIEEGVEGLVHVSEMDWTNANARPSKIVKLGQEVEVVVLDVQE 337

Query: 680 -RGKIKLSMKVVDQNTGK 696
            + +I LSMK   +N  +
Sbjct: 338 SKHRISLSMKQAQENPWE 355



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 18/258 (6%)

Query: 448 LMDAGVPISKPVAGIAMGLVKDG----DDFI-ILSDISGDEDHLGHMDFKVAGTDSGITA 502
           LM   V I++  A I +GL  +G    D+F     ++  +E  +  +  K      G T 
Sbjct: 24  LMGTIVSINREKAIINVGLKSEGFISLDEFKNPQGELEVEEGDIVEVALKSIDDGLGNTL 83

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           +             + +A+   +     +   +   L+     +  F P   +   P   
Sbjct: 84  LSYTDAKRIKLWQSLELAMNSKEVVTGVVTGAVKGGLTVDIGVVKAFLPGSLVDIRPVKD 143

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVN-IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
              +IG         +E T  K++ I ++  +   +       A RE++     + E  +
Sbjct: 144 FSYLIGQE-------IEATVIKMDEIRNNIVISRKAVLQEANSADREILLEG--LEEGKE 194

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V  + D+GAF+   G  DGL+HI+ +S +RV   S+ +  GD + VK+L++D   
Sbjct: 195 I-EGLVKNLADYGAFIDL-GGVDGLLHITDISWQRVNHPSEKLTIGDKIIVKVLNYDKEK 252

Query: 682 -KIKLSMKVVDQNTGKPI 698
            ++ L +K +  +    I
Sbjct: 253 IRVSLGLKQLTASPWDNI 270



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +A      S              V  + DFG FV   G  DGL+H++ +S E   ++S
Sbjct: 346 MKQAQENPWESFEVTHNKGDKILVSVKSITDFGLFVGLPGGIDGLIHLADISWE--KQSS 403

Query: 662 DVV----KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D +     +G  + V +L+ D ++ +I L +K + ++
Sbjct: 404 DQLVSSYSKGQELEVIILNIDAEKERISLGIKQLLED 440



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I KG +++V   GA +       G +   ++S  RV   + ++K G+ V V +++ D R 
Sbjct: 454 IVKGVIMEVDSHGAIISLGEDITGYLKAGEISENRVDDVTSILKIGEEVEVAIVNVDRRT 513

Query: 682 K-IKLSMKVVDQNTGK 696
           + I +S+K  +    K
Sbjct: 514 RNISVSIKAKNSVEEK 529


>gi|310639524|ref|YP_003944282.1| RNA binding s1 domain protein [Paenibacillus polymyxa SC2]
 gi|309244474|gb|ADO54041.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2]
          Length = 171

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63

Query: 678 DDRGKIKLSMKV 689
           D  GKI LS+K 
Sbjct: 64  DKDGKIGLSIKQ 75


>gi|307942850|ref|ZP_07658195.1| ribosomal protein S1 [Roseibium sp. TrichSKD4]
 gi|307773646|gb|EFO32862.1| ribosomal protein S1 [Roseibium sp. TrichSKD4]
          Length = 564

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           + +A +  ++    I N++    +        F PR ++   P   +  ++         
Sbjct: 104 LEVAFEANEKVTGQIFNQVKGGFTVDLDGAVAFLPRSQVDIRPVRDVTPLMHTPQPFQIL 163

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +++          G + ++   + E   A +    +  + E   + +G V  + D+GAF
Sbjct: 164 KMDKRR--------GNIVVSRRVVLEETRAEQRSELVQSLEEGQTV-EGVVKNITDYGAF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+H++ ++  R+   S+V+  G TV V+++  + D  +I L MK ++ +  
Sbjct: 215 VDL-GGIDGLLHVTDIAWRRINHPSEVLTIGQTVKVQIIRVNQDTHRISLGMKQLETDPW 273



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     +   + G+V  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 271 DPWDGIEAKYPLEAKFSGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVST 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K   QN  
Sbjct: 331 SQEVEVMILEVDPVKRRISLGLKQTLQNPW 360



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +   VN   +G+V    +FG F+   G  DG+VH+S L   R   +  D  K
Sbjct: 357 QNPWDAFAEQFPVNTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIDEYK 416

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D ++ +I L +K +  + 
Sbjct: 417 KGDMVRAVVLDVDVEKERISLGIKQLGGDP 446



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
            M            +   +V+++ D G  V             + LS +R  +  D    
Sbjct: 446 PMESGAAGELRKGSVVTCEVIEIKDGGLEVKIADSDLTAFARRADLSRDRDEQRPDKFSV 505

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           GD    ++  FD + + + +S+K ++    K  V
Sbjct: 506 GDKFDARITQFDKKTRKVAVSIKALEIAEEKEAV 539


>gi|296158978|ref|ZP_06841806.1| Tex-like protein-like protein [Burkholderia sp. Ch1-1]
 gi|295890853|gb|EFG70643.1| Tex-like protein-like protein [Burkholderia sp. Ch1-1]
          Length = 782

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRIALTMRMDDE 729


>gi|160898815|ref|YP_001564397.1| RNA-binding S1 domain-containing protein [Delftia acidovorans
           SPH-1]
 gi|160364399|gb|ABX36012.1| RNA binding S1 domain protein [Delftia acidovorans SPH-1]
          Length = 786

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 14/130 (10%)

Query: 569 MGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            G   I+ I+ E      +   D  V   +  + +I+  +E               +G V
Sbjct: 623 FGAITIKDILGELEKPGRDPRPDFVVARFNDGVEDIKDLKE-----------GMTLEGTV 671

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V  FGAFV     +DGLVH+SQ+S + +    +VVK G  V VK+L+ D  R +I L+
Sbjct: 672 SNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKVLEVDVARKRISLT 731

Query: 687 MKVVDQNTGK 696
           MK +D    +
Sbjct: 732 MK-LDAAPAR 740


>gi|91784192|ref|YP_559398.1| S1 RNA-binding domain-containing protein [Burkholderia xenovorans
           LB400]
 gi|91688146|gb|ABE31346.1| S1 RNA binding domain protein [Burkholderia xenovorans LB400]
          Length = 781

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRIALTMRMDDE 729


>gi|83814780|ref|YP_445904.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855]
 gi|83756174|gb|ABC44287.1| ribosomal protein S1, putative [Salinibacter ruber DSM 13855]
          Length = 871

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
                I +  +   + +G+VV + ++GAFV      +GLVHIS++S    +   S +V  
Sbjct: 437 HPWDQIGNKYDEGDVVEGKVVSITNYGAFVEIEKGIEGLVHISEMSWTRHIEHPSQMVSL 496

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  V VK+L+ D +  KI L MK ++ +  + I
Sbjct: 497 GQVVDVKILNIDQEERKISLGMKQLEPDPWEGI 529



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 4/126 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   +E    K+N +++  V      +       E  + I +  EV ++ +G V  ++DF
Sbjct: 320 LETRMEFKIVKLNPENENIVVSHRELIEHELE--EQRQEILEQLEVGQVLEGTVKNIVDF 377

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQ 692
           G F+   G  DGL+HI+ LS  RV+  S+VV+    + V +LD+ ++R +I L +K +  
Sbjct: 378 GVFIDL-GGVDGLLHITDLSWGRVSHPSEVVELDQELEVVVLDYEEERQRISLGLKQLRD 436

Query: 693 NTGKPI 698
           +    I
Sbjct: 437 HPWDQI 442



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 92/254 (36%), Gaps = 32/254 (12%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G VK+  DF +  D+ G +   H+  + +      S +  +  ++++  +         Q
Sbjct: 369 GTVKNIVDFGVFIDLGGVDGLLHITDLSWGRVSHPSEVVELDQELEVVVLDYE---EERQ 425

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   + +     +     +      +V  ++I        I  G + +  I E + 
Sbjct: 426 RISLGLKQLRDHPWDQIGNKYDEGDVVEGKV--VSITNYGAFVEIEKGIEGLVHISEMSW 483

Query: 583 AK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            +                   +NID +           E     +    I+D      + 
Sbjct: 484 TRHIEHPSQMVSLGQVVDVKILNIDQEERKISLGMKQLEP----DPWEGISDRYPAGTVL 539

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G V  + +FG FV      DGLVH+S LS  +++    D+V E   + V +L+ D +R 
Sbjct: 540 TGTVRNITNFGVFVEIEPGIDGLVHVSDLSWTKKIRHPGDMVDEEQELDVVILNIDEERR 599

Query: 682 KIKLSMKVVDQNTG 695
           +I L  K V  N  
Sbjct: 600 RISLGHKQVKTNPW 613



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G ++    E     +NID++           +            D  E      G+
Sbjct: 574 IRHPGDMVDEEQELDVVILNIDEERRRISLGHKQVKTN----PWDQFADAYEEGNDTTGE 629

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKL 685
           VV+V D G  V      +  V  S+L         +   EGD + ++++ FD   K I L
Sbjct: 630 VVRVEDKGLVVQLPLDVEAFVPGSELKNG-PKAFKNHYHEGDELELQVIRFDKDQKDIVL 688

Query: 686 S 686
           S
Sbjct: 689 S 689


>gi|323526564|ref|YP_004228717.1| Tex-like protein [Burkholderia sp. CCGE1001]
 gi|323383566|gb|ADX55657.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1001]
          Length = 780

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRIALTMRLDDE 729


>gi|257054903|ref|YP_003132735.1| transcriptional accessory protein [Saccharomonospora viridis DSM
           43017]
 gi|256584775|gb|ACU95908.1| transcriptional accessory protein [Saccharomonospora viridis DSM
           43017]
          Length = 775

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAFV     +DGLVH+S +S   V+   DVVK GD V VK+LD 
Sbjct: 645 KPGMRLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHRYVSDPRDVVKPGDVVTVKVLDV 704

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  R +I L++++ D  
Sbjct: 705 DVPRKRISLTLRLDDDP 721


>gi|289643005|ref|ZP_06475138.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507227|gb|EFD28193.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 850

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A   AA               + +G V  V  FGAFV     +DG
Sbjct: 636 DILRELEKPGRDPRPAFRTAAFAEGVETLADLAPGMVLEGVVTNVAAFGAFVDVGVHQDG 695

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVH+S +S   V+   +VVK GD V VK+LD D  R +I L++++ D N
Sbjct: 696 LVHVSAMSRNFVSDPREVVKPGDIVRVKVLDVDIARKRISLTLRLDDDN 744


>gi|38422325|emb|CAE45327.1| unnamed protein product [Magnetospirillum gryphiswaldense]
          Length = 567

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +I +G V  + D+GAFV   G  DGL+H++
Sbjct: 172 GNIVVSRRAVLEETRAEQRSELIENLKEG-QILEGVVKNITDYGAFVDL-GGVDGLLHVT 229

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++ +R+   S+ +  G TV V+++ F+ +  +I L +K +D +  +
Sbjct: 230 DIAWKRINHPSEALHIGQTVKVQVIRFNPETQRISLGIKQLDADPWE 276



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 273 DPWEGVEAKYPVQAKFVGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 332

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
              V V +LD D +  +I L +K    N  +  V
Sbjct: 333 SQEVEVMVLDVDPQKRRISLGLKQCLSNPWESFV 366



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEG 667
              S  +   V  + +G+V  + +FG F+   G  DG+VH+S LS ++    +    K+G
Sbjct: 361 PWESFVEKFPVGTLVEGEVKNITEFGLFIGLSGDIDGMVHMSDLSWDKSGDAAIAEYKKG 420

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           D V  K+LD D ++ +I L +K +  +  +  V
Sbjct: 421 DVVNAKVLDVDVEKERISLGIKQLGADPFQDAV 453



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      +   I    V +V + G  V   G   G +  S+LS ER  +  +    G
Sbjct: 447 DPFQDAVANVKKGDIVTCAVTQVTENGLEVQVDGMT-GFIRKSELSRERSEQRPERFAVG 505

Query: 668 DTVWVKLLDFDDRG--KIKLSMKVVDQNTGK 696
           + +  K+    ++G  K+ LS+K  + +  K
Sbjct: 506 EKIDAKVTMI-EKGARKVTLSVKAREIDEEK 535


>gi|91976666|ref|YP_569325.1| RNA binding S1 [Rhodopseudomonas palustris BisB5]
 gi|91683122|gb|ABE39424.1| RNA binding S1 [Rhodopseudomonas palustris BisB5]
          Length = 798

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   I +  +  V  FGAF      +DG
Sbjct: 641 DILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATITNVAAFGAFADIGVHQDG 700

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           L+HIS +S  R+    +VVK G  V VK+L+ D  R +I L++++ D    
Sbjct: 701 LIHISAMSERRINDPREVVKPGQVVKVKVLEVDVPRNRIGLTLRLADPIPA 751


>gi|294665049|ref|ZP_06730355.1| transcription-related protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605167|gb|EFF48512.1| transcription-related protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 786

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 19/154 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQ------TGAKVNIDDDGTVKIASSSLAEIEAAREMIR----- 611
           +  ++G  GK I+ ++           ++  DD   V      L E+E      R     
Sbjct: 580 VERIVGSTGKPIKALLGDGSFLRGLKPEMFTDDQFGVPTVRDILKELEKPGRDPRPEFKA 639

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        +   + +G V  V  FGAFV     +DGLVHIS LS   V    DVV
Sbjct: 640 AQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVV 699

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 700 KAGDIVKVKVLEVDVARKRIALTCRLSDTPPAAD 733


>gi|241889493|ref|ZP_04776792.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
 gi|241863800|gb|EER68183.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
          Length = 402

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I     +++    G      +E+            + +    + E E A+++     ++ 
Sbjct: 152 IDTKFRKDLSKFVGNEYTFKIEEVDKS-----KNKIILNRRVILEEEKAKKLAEVYGNIN 206

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G+V ++ DFGAFV+  G  DGL+HIS++S  RV K +DV+  GDT+ V ++  
Sbjct: 207 EG-DVIEGKVSRITDFGAFVNI-GEVDGLLHISEISHARVEKVADVLSVGDTIKVAVIAV 264

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +  K+ LS K +     +
Sbjct: 265 DKENEKVSLSAKTLLPTQWE 284



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 12/132 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +++ +V+ +G  +   ++          D    K++ S+   +    E+ R+     + 
Sbjct: 244 VEKVADVLSVGDTIKVAVIAV--------DKENEKVSLSAKTLLPTQWEVARATI---KA 292

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
               +G V     FGAFV      +GLVHISQ+S ERV    DV+K+GD V VK+L+FD 
Sbjct: 293 GDALEGVVRNTTAFGAFVEVLPDVEGLVHISQISHERVTNVEDVLKKGDKVNVKVLEFDF 352

Query: 679 DRGKIKLSMKVV 690
           +  ++ LS+K +
Sbjct: 353 ENERLSLSIKEL 364



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E++ S   + + +K+  G V K+ +   +V   GA+ D ++  +Q++ +      DV+  
Sbjct: 7   ELLNSSEMLKKGDKV-TGTVSKIDNDKVYVDVAGAQYDCVILRNQITRKPFENIEDVLSV 65

Query: 667 GDTVWVKLLDF--DDRGK-------IKLSMKVVD 691
           GD V  ++     D   +       I LS K+++
Sbjct: 66  GDEVEAQVTGIRADREKRSEDVPGVIYLSHKILE 99


>gi|15964833|ref|NP_385186.1| hypothetical protein SMc02644 [Sinorhizobium meliloti 1021]
 gi|307300903|ref|ZP_07580672.1| Tex-like protein [Sinorhizobium meliloti BL225C]
 gi|307320720|ref|ZP_07600132.1| Tex-like protein [Sinorhizobium meliloti AK83]
 gi|15074012|emb|CAC45659.1| Putative transcriptional accessory protein [Sinorhizobium meliloti
           1021]
 gi|306893647|gb|EFN24421.1| Tex-like protein [Sinorhizobium meliloti AK83]
 gi|306903858|gb|EFN34444.1| Tex-like protein [Sinorhizobium meliloti BL225C]
          Length = 768

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 34/199 (17%)

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR---------------NVIG 568
           A R  +       ++L   RL    F      + IP                     ++ 
Sbjct: 521 AHRDAMGAFASRKELLKVPRLGARTFEQCAGFLRIPNGSEPLDASAVHPEAYGVAKKIVA 580

Query: 569 MGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPE 618
             G+ +R ++  +        ++ +D+   +      LAE+E      R   ++ T    
Sbjct: 581 ACGRDVRSLMADSAELKKLDPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEG 640

Query: 619 VNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           V+ I         +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V
Sbjct: 641 VDDIKDLKVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVV 700

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V++ + D  R +I LSM+
Sbjct: 701 QVRVTEVDVARKRIGLSMR 719


>gi|297528930|ref|YP_003670205.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
 gi|297252182|gb|ADI25628.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
          Length = 121

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 9   IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 68

Query: 681 GKIKLSMKVVDQNTGKP 697
            +  LS+K ++    K 
Sbjct: 69  RRASLSLKALEPAGEKE 85


>gi|257791221|ref|YP_003181827.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|257475118|gb|ACV55438.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
          Length = 717

 Score = 87.7 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D +   +G+G   +R IV +      ++  G      +              +T   E
Sbjct: 593 DVDALAAELGVGAPTLRDIVSE------LEKPGRDPRDDAPEVVFSEGVRDFDDLTVGME 646

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +     G V  V+DFGAFV     +DGLVH+S+++   V   S+VV  GDTV V +   D
Sbjct: 647 L----TGTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID 702

Query: 679 -DRGKIKLSM 687
            DRG+I LSM
Sbjct: 703 KDRGRISLSM 712


>gi|302835331|ref|XP_002949227.1| hypothetical protein VOLCADRAFT_104170 [Volvox carteri f.
           nagariensis]
 gi|300265529|gb|EFJ49720.1| hypothetical protein VOLCADRAFT_104170 [Volvox carteri f.
           nagariensis]
          Length = 1359

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 8/91 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           PE+  +Y+G+V   M  G FV         +GLVHI+ +  + +   +DVVK G+ VWVK
Sbjct: 248 PELGGVYRGRVTGTMGTGCFVELINFAKKMEGLVHIANICKKPIQSPTDVVKRGEEVWVK 307

Query: 674 LLDF-----DDRGKIKLSMKVVDQNTGKPIV 699
           ++       + + ++ LSM+ VDQ TGK ++
Sbjct: 308 VIGMGSVGANGQQRLSLSMRDVDQATGKDLL 338


>gi|229171090|ref|ZP_04298688.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus MM3]
 gi|228612420|gb|EEK69644.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus MM3]
          Length = 722

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 130/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   ++  F +  N       +  +++R   P+ +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKQEVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +D+            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLGLSKDDVGQLQLQKSLEE------------VEISKLSQETGVGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    D+V  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSKQYVKHPLDIVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory protein [Janthinobacterium sp.
           Marseille]
 gi|151281145|gb|ABR89555.1| Tex transcriptional accessory protein [Janthinobacterium sp.
           Marseille]
          Length = 782

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           + I +G V  V  FGAFV     +DGLVHIS LS   V     VVK G  V VK+L+ D+
Sbjct: 663 DMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLEVDE 722

Query: 680 -RGKIKLSMKVVDQNT 694
            R +I L+M++ D   
Sbjct: 723 KRKRIALTMRLSDSAP 738


>gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 262

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 6/241 (2%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            ++ D  +R D R    +R  S Q+     + GSS   +G T   V V  G RE      
Sbjct: 7   DILNDGGLRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSV-FGPREPRNR-- 63

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR 424
            L+   R    +    +P A G  +R     +R    G   R+   PV+         + 
Sbjct: 64  GLASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIA 123

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I  ++  +DG     ++  ++LAL+DAG+ +   V+ I++GL        +      +E 
Sbjct: 124 IHVQVLSADGGILPTSINATTLALIDAGIALLDYVSSISIGLHLLQPLLDL---SQPEES 180

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            L  +      +   IT  QM+ ++       M+    +A +     ++ + K  +E  +
Sbjct: 181 DLPSLVIASLPSSGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKDRTERIV 240

Query: 545 Q 545
           +
Sbjct: 241 E 241



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 16/201 (7%)

Query: 32  LATYGETVVLATVVYDRSLKDG----QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN 87
            AT G T V  +V   R  ++      D   ++V      +A G        R +R  + 
Sbjct: 42  TATQGLTTVEVSVFGPREPRNRGLASHDRAVVSVEVGVVPWAAG-----AGARRTRGDKR 96

Query: 88  EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
              I   I ++  P+       ++E  + + V+  D    P   S+ A + AL+ +G+  
Sbjct: 97  LQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADGGILP--TSINATTLALIDAGIAL 154

Query: 146 EGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS--GTQDAVLMVELEANQLSEDVVLDA 203
              V    +     Q +L+    E+     L ++   +   + + ++E  +L  D   + 
Sbjct: 155 LDYVSSISIGLHLLQPLLDLSQPEESDLPSLVIASLPSSGKITLAQME-TRLHVDRFEEM 213

Query: 204 IIFGHNECKPVIEAISKLAKM 224
           +  G   CK + E +  + K 
Sbjct: 214 LTLGVEACKVLKEEMDGVVKD 234


>gi|189502053|ref|YP_001957770.1| 30S ribosomal protein S1 [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497494|gb|ACE06041.1| hypothetical protein Aasi_0644 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 611

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-D 615
            I    +R+        +  +++    K+N   D  +    S  A IE + E  ++    
Sbjct: 154 QIDVKPVRDF----DIFLDKVIDVVVIKINHLTDNVIV---SHKAVIERSLENQKTNILS 206

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E  +I +G V  +  FG FV   G  DGL+HI+ ++  R+    +V++ G  + V + 
Sbjct: 207 KLEKGQILEGIVKNMTSFGVFVGL-GGIDGLLHITDIAWRRITHPEEVLELGQKIKVVVT 265

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
           DFD +R +I L MK +  N  + +
Sbjct: 266 DFDEERKRISLGMKQLTPNPWEQL 289



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 99/267 (37%), Gaps = 22/267 (8%)

Query: 448 LMDAGVPISKPVAGIAM--GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
           LM     I   V    +    VK      ++ D+ G E  L      V         +  
Sbjct: 110 LMKVWETIKDSVENGTILEAFVKRRTKGGLIVDLQGVEAFLPGSQIDVKPVRDFDIFLDK 169

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
            + +  I  N +   +  + +  +    E  K    S+L+ G+    +E +         
Sbjct: 170 VIDVVVIKINHLTDNVIVSHKAVIERSLENQKTNILSKLEKGQI---LEGIVKNMTSFGV 226

Query: 566 VIGMGGKV-IRGIVEQTGAKVNIDDD-----GTVKIASSSLAEIEAAR---------EMI 610
            +G+GG   +  I +    ++   ++       +K+  +   E                 
Sbjct: 227 FVGLGGIDGLLHITDIAWRRITHPEEVLELGQKIKVVVTDFDEERKRISLGMKQLTPNPW 286

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDT 669
             +    E+    KG++V + D+GAF+      +GL+HIS++S  + + K  +VV  GD 
Sbjct: 287 EQLPSYIEIGAKVKGKIVNIADYGAFLEIMPGIEGLIHISEMSWSQHLKKVEEVVHIGDE 346

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           +   +L  D +  K+ L +K + Q+  
Sbjct: 347 IEAIVLSLDKEEKKMSLGIKQLTQDPW 373



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 24/195 (12%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
             R  I   M ++      QL  +      +      I +      I  G + +  I E 
Sbjct: 269 EERKRISLGMKQLTPNPWEQLPSYIEIGAKVKGKIVNIADYGAFLEIMPGIEGLIHISEM 328

Query: 581 TGAK--------VNIDDDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKIY------ 623
           + ++        V+I D+    + S    E + +   +++ +       +   Y      
Sbjct: 329 SWSQHLKKVEEVVHIGDEIEAIVLSLDKEEKKMSLGIKQLTQDPWAKEGLEDKYAAGTKH 388

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G +  +  FGA +      DGL+HIS LS  +++   +D++K GD + + +L+FD +  
Sbjct: 389 VGTIKNITHFGALMELEEGIDGLLHISDLSWTKKINHPTDMLKLGDKLELLILEFDKENR 448

Query: 682 KIKLSMKVVDQNTGK 696
           ++ L +K +++N  +
Sbjct: 449 RLSLGLKQLEENPWE 463



 Score = 41.1 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D + T      S  E +  +++          +++ KG VV + +    V+     DGL+
Sbjct: 11  DQNITKLGIDYSEEERKELKKLYEDTLKSVAESEVAKGTVVGINNRDVIVNIGIKSDGLI 70

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
            +S+            +K GD V V + + ++ +G++ LS K
Sbjct: 71  PLSEFRDTPD------IKVGDEVDVYVEEQENSKGQLVLSRK 106


>gi|39997697|ref|NP_953648.1| 30S ribosomal protein S1 [Geobacter sulfurreducens PCA]
 gi|39984589|gb|AAR35975.1| ribosomal protein S1 [Geobacter sulfurreducens PCA]
          Length = 574

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 567 IGMGGKVIRGI--VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           +  GG + + I   ++          G + ++   L E E A     ++ ++ E     +
Sbjct: 151 LRPGGNLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTR-E 209

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAFV   G  DGL+H++ +S  R+   S+++K GD + VK+L +D ++GKI
Sbjct: 210 GVVKNITDYGAFVDI-GGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKI 268

Query: 684 KLSMKVVDQNTG 695
            L +K +  +  
Sbjct: 269 SLGLKQITPDPW 280



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G+V  V DFG F+      +GLVH+S+LS E+VA   D    GD +   +L  DD   
Sbjct: 467 VRGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEK 526

Query: 682 KIKLSMKVVDQNTGK 696
           KI LS+K +     K
Sbjct: 527 KIALSVKALQAAAEK 541



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++    +V     G+VV + D+GAFV      +GLVH+S++S  +R+   SD++  
Sbjct: 278 DPWLAVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTV 337

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V   +L  D    +I L +K    N  
Sbjct: 338 GDEVETVVLGIDTGNRRISLGLKQAQANPW 367



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           +A       + +   V    +GQ+  + DFG F+      DGLVH+S +S  +R+    +
Sbjct: 361 QAQANPWTQLEEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGE 420

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V  +G TV   +L+ D +  ++ L +K +  +  
Sbjct: 421 VYAKGQTVQAVVLNVDAENERLSLGIKQLTPDPW 454


>gi|218461914|ref|ZP_03502005.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli Kim 5]
          Length = 70

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/60 (78%), Positives = 53/60 (88%)

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I 
Sbjct: 1   FGARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIA 60


>gi|304440184|ref|ZP_07400074.1| general stress protein 13 [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371233|gb|EFM24849.1| general stress protein 13 [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 125

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ +I  G V  VM FGAFV       GLVHIS++S   V   +D VK GD+V VK+L+ 
Sbjct: 3   EIGEIVDGTVKSVMKFGAFVELEDGSTGLVHISEVSNSFVKDINDYVKSGDSVKVKVLEI 62

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           +D  KI LSMK  +    K 
Sbjct: 63  EDD-KISLSMKQTEPPKPKE 81


>gi|149920266|ref|ZP_01908737.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1]
 gi|149818853|gb|EDM78293.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1]
          Length = 567

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           +     +   + E+   K+       G + ++   L E E A     ++  + E  +I +
Sbjct: 149 LRPVRNLDAFLNEEFDFKIIKFNKRRGNIVLSRRVLLEAERAELKHDTLNKLAEG-QIVE 207

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + D+GAF+   G  DGL+HI+ +S  R+   S++ + GD V VK+L F+ +  ++
Sbjct: 208 GVVKNLTDYGAFIDL-GGIDGLLHITDMSWGRINHPSELFQVGDKVKVKVLKFNSESERV 266

Query: 684 KLSMKVVDQNTG 695
            L +K +  +  
Sbjct: 267 SLGLKQITPDPW 278



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +  +      + +G+VV + D+GAF+      +GLVH+S++S  R +     VV  
Sbjct: 276 DPWINAEEKYIPGTVVQGKVVSIKDYGAFIELEEGIEGLVHVSEMSWTRQIKNPKQVVNL 335

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            D V   +LD D  + +I L MK +++N  + ++
Sbjct: 336 SDEVKAVVLDIDVSQNRISLGMKQLEENPYEKVL 369



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      +  G +  + DFG FV      DGLVHI+ LS  +RV   SD+ K+G
Sbjct: 364 PYEKVLEKYPPGTVVAGVIRNIADFGVFVELEPGIDGLVHITDLSWTQRVRHPSDIYKKG 423

Query: 668 DTVWVKLLDFDDRG---KIKLSMKVVDQNTG 695
           D V   +L+ D+ G   KI L +K +  +  
Sbjct: 424 DEVQAAVLNIDNSGEKPKISLGIKQLSSDPW 454



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +NID+ G     S  + ++ +  +    +     + K+ + +++K+ DFGAF       +
Sbjct: 431 LNIDNSGEKPKISLGIKQLSS--DPWDRVPYEFPIGKVTEVKILKLTDFGAFAEIIPGVE 488

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           GL+HIS++S ER+     V++ G     +++  D +  KI LS+K
Sbjct: 489 GLIHISEISEERIEDPRQVLEPGQECRAEVIQLDANERKIGLSIK 533



 Score = 38.0 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLA------EIEAAREM--IRSITDVPEVNKIYKGQVVKV 630
           E    +VNI D+  V I  +  +        + AR+      I    E + I KG +   
Sbjct: 66  EDGNIEVNIGDEAEVLIEHAEDSNGLVVLSKDKARKRKVWDEIQSAMEEDGIVKGLINAR 125

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
           +  G  V   G     +  SQ+    V      + E      K++ F+ R G I LS +V
Sbjct: 126 VKGGLSVTLQGGVKAFLPGSQVDLRPVRNLDAFLNE--EFDFKIIKFNKRRGNIVLSRRV 183

Query: 690 VDQNTGKPI 698
           + +     +
Sbjct: 184 LLEAERAEL 192


>gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
 gi|228269971|gb|EEK11451.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
          Length = 393

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+        ++  V ++  ++ + E   +    +  + 
Sbjct: 139 ISTDFIEDFSVFEGQTIRLKVEELDP-----ENNRVILSRKAVEQAENDVKKASLLDSLN 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  G  V VK+   
Sbjct: 194 EG-DVIKGKVARLTNFGAFVDI-GGVDGLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSV 251

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           + D  +I LS+K       + I
Sbjct: 252 EKDTERISLSIKDTLPTPFENI 273



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      N + +G+V+++ +FGAFV       GLVHIS+++ + +   S+V++ G 
Sbjct: 269 PFENIKGKFHENDVIEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQ 328

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNT 694
            V VK+L  D+   +I LS+K    N 
Sbjct: 329 QVSVKILGIDEENERISLSIKATLPNE 355



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  GA+ +G++ ISQLST  +   S+++ E
Sbjct: 5   EFNESMINDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISE 64

Query: 667 GDTVWVKL--LDFDDRG 681
           GD +   +  ++ D+  
Sbjct: 65  GDEIEAYVTKIEIDEEN 81


>gi|167770408|ref|ZP_02442461.1| hypothetical protein ANACOL_01751 [Anaerotruncus colihominis DSM
           17241]
 gi|167667415|gb|EDS11545.1| hypothetical protein ANACOL_01751 [Anaerotruncus colihominis DSM
           17241]
          Length = 721

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFG FV     +DGLVHISQ++   +   S+V++ GD V V +L  D  + 
Sbjct: 648 LRGTVRNVIDFGVFVDIGVHQDGLVHISQITNRYIRHPSEVLRVGDIVTVWVLSVDVPKK 707

Query: 682 KIKLSMK 688
           +I L+MK
Sbjct: 708 RISLTMK 714


>gi|86750388|ref|YP_486884.1| RNA binding S1 [Rhodopseudomonas palustris HaA2]
 gi|86573416|gb|ABD07973.1| RNA binding S1 [Rhodopseudomonas palustris HaA2]
          Length = 799

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 19/152 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNI------DDDGTVKIASSSLAEIEAAREMIR----- 611
           ++ ++      I+ I+ QT    ++      DD   +   +  L E+E      R     
Sbjct: 600 VKKILAATKSDIKAIIGQTKTLQSLQPASFADDKFGIPTVTDILKELEKPGRDPRPEFKT 659

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        +   I +  V  V  FGAF      +DGL+HIS +S  R+    +VV
Sbjct: 660 ATFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVV 719

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           K G  V VK+L+ D  R +I L++++ D    
Sbjct: 720 KPGQVVKVKVLEVDVPRNRIGLTLRLSDPIPA 751


>gi|325479338|gb|EGC82434.1| S1 RNA binding domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 426

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I KG+V  + DFGAFV      DGLVH+S++S + +   ++V+     V VK+++ 
Sbjct: 350 KEGMILKGKVRNITDFGAFVDIGVGIDGLVHVSKISDKFIKNPNEVLTNSQIVNVKVIEI 409

Query: 678 DDRG-KIKLSMKVVDQ 692
           D +  +I LSMK V +
Sbjct: 410 DKKKERIGLSMKDVGE 425


>gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
 gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
          Length = 402

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 6/185 (3%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S  ++  A ++       ++N     L  +   +  F P  ++  I              
Sbjct: 124 SWRMLQTAFERGDVITARVVNYNKGGLLVNLDGVRGFVPASQVNGI---SRGPETQKQSD 180

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVM 631
           + R +      KV   +    ++  S    ++ ARE  +  +    +   +  G +  V 
Sbjct: 181 MARMVNTDLQLKVIEINRNRNRLILSERQAVQEARETKKDELLSRLKEGDVRTGTISSVC 240

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           DFGAFV   GA DGLVH+S++S  RV   S+V+  GD V V +L  D DR +I LS+K  
Sbjct: 241 DFGAFVDIGGA-DGLVHLSEISWSRVKHPSEVLHPGDKVQVSILSVDHDRKRIALSIKRT 299

Query: 691 DQNTG 695
                
Sbjct: 300 QSEPW 304



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E      +  ++ +I +G + ++  FGAF       +GL+HIS++  ER+    +V+ EG
Sbjct: 302 EPWTRAGERYQLGQIVEGTITQLASFGAFARIEDGIEGLIHISEMGDERIQHPKEVIAEG 361

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           DT+  +++  D  R ++ LS++ +++   +P+
Sbjct: 362 DTIQARIIRIDPARKRMGLSLR-LNREPDEPV 392


>gi|257066240|ref|YP_003152496.1| RNA binding S1 domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798120|gb|ACV28775.1| RNA binding S1 domain protein [Anaerococcus prevotii DSM 20548]
          Length = 699

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 13/137 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I  + +   + +G   +  I+ E      +  DD       +    +           D 
Sbjct: 573 INLESLAEKLEVGVPTLEDIISELKKPGRDPRDDN--PEVLTRKEVMG---------IDD 621

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I KG+V  + DFGAFV      DGLVH+S++S + +   ++V+     V VK+++
Sbjct: 622 LKEGMILKGKVRNITDFGAFVDIGVGIDGLVHVSKISNKFIKNPNEVLTNSQVVEVKVIE 681

Query: 677 FDDRG-KIKLSMKVVDQ 692
            D +  +I LSMK + +
Sbjct: 682 IDRKKERIGLSMKDIGE 698


>gi|209965768|ref|YP_002298683.1| 30S ribosomal protein S1 [Rhodospirillum centenum SW]
 gi|209959234|gb|ACI99870.1| ribosomal protein S1 [Rhodospirillum centenum SW]
          Length = 576

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A      + ++ E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 180 GNIVVSRRAVLEESRAEARSELVANLKEG-QVLQGVVKNITDYGAFVDL-GGVDGLLHVT 237

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++  R+   S+ ++ G TV V+++ F+ +  +I L MK ++ +  +
Sbjct: 238 DIAWRRINHPSEALQIGQTVTVQVIRFNPETQRISLGMKQLEADPWE 284



 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   +KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 281 DPWEGVEAKYPVQAKFKGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVST 340

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
              V V +LD D  + +I L +K   QN  +  V
Sbjct: 341 SQEVEVMVLDVDPVKRRISLGLKQTMQNPWESFV 374



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    S  +        +G+V  + +FG FV   G  DG+VH+S L       +     K
Sbjct: 367 QNPWESFVEKFPGGTELEGEVKNITEFGLFVGLPGDIDGMVHLSDLDWNTPGEQAIQTYK 426

Query: 666 EGDT-VWVKLLDFDDRGKIKLSMKVVDQNT 694
           +GD      L    ++ +I L +K +  + 
Sbjct: 427 KGDQVKVKVLDVDVEKERISLGIKQLAGDP 456



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G  V       G +  S LS +R  +  D    G+ V  K+   D    KI LS+K  + 
Sbjct: 481 GIEVEVGEGFTGFIRKSDLSRDRSEQRPDRFAIGEKVDAKVTQIDRGSRKITLSIKAKEV 540

Query: 693 NTGK 696
              K
Sbjct: 541 EEEK 544


>gi|28211189|ref|NP_782133.1| 30S ribosomal protein S1 [Clostridium tetani E88]
 gi|28203629|gb|AAO36070.1| SSU ribosomal protein S1P [Clostridium tetani E88]
          Length = 387

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 16/241 (6%)

Query: 462 IAMGLVKDGD-DFIILSDISGDEDHLGHMDFKV----AGTDSGITAMQMDMKIGGISENI 516
           I +G V DG      L DI   E+     +  V         G   +   +     + + 
Sbjct: 44  INIGYVADGIIKKSDLEDIDFKEEFKKDEEVYVYVVKLNDGEGNVILSKRIADKIRTLDK 103

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +    ++    ++ I   +   +      +  F P      I    ++++    GK    
Sbjct: 104 LEKDFKEGNIFKIKIEEIVKGGVITHINGVRAFIPASH---ISSKFVQDLNEFLGKEKDV 160

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K     D  + +++  + + +  ++       + E  KI  G+VV+++ FG F
Sbjct: 161 KVIEFNRK-----DNKLVLSAKEVEDEKLTKKREELWKTLKEGEKI-NGKVVRLVKFGVF 214

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  +GLVH+S LS +RV   SD+VKEGD V V +L+ D  R ++ L++K + ++  
Sbjct: 215 VDI-GGIEGLVHLSDLSWKRVNNPSDIVKEGDEVEVFILNVDKKRERLGLALKDIKEDPW 273

Query: 696 K 696
           K
Sbjct: 274 K 274



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +   D  ++  +  G VVK+++FGAFV      +GL+HIS++S ER+ K  +V+K G
Sbjct: 271 DPWKKALDNHKIGTVEHGTVVKLVEFGAFVELKDGLEGLLHISEISEERILKPEEVLKIG 330

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           D + VK+LD +   + + LS K  +  +   +
Sbjct: 331 DKIKVKILDINKENRKMSLSKKAAEDKSSAEM 362


>gi|116669460|ref|YP_830393.1| RNA-binding S1 domain-containing protein [Arthrobacter sp. FB24]
 gi|116609569|gb|ABK02293.1| RNA binding S1 domain protein [Arthrobacter sp. FB24]
          Length = 861

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVH+S L+   V+   +VVK G  V VK+L+ D +
Sbjct: 693 MILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRVKVLEADPE 752

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L++++ D+  
Sbjct: 753 RKRISLTLRLDDEPA 767


>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 217

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 16/179 (8%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
              R D R    +R +   VG+L R  GS+ F  G +  +  V  G        + L   
Sbjct: 15  GHSRPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSV-YGPTASRPRDEKL--- 70

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
             +   +   F P +       G    +E  +    R+ +  ++        T++I  ++
Sbjct: 71  --DHAHIQVVFSPVS-------GISGTQERTYEHFIRQVVEAIVLSALHPRTTIQITLQV 121

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
              DGS     +  + LAL+DAG+P+SK  + +   + K+G   ++L D    E     
Sbjct: 122 LFDDGSILSTAINAAVLALIDAGIPLSKTCSAVTCMISKEG---VLLLDPVLLECSEAQ 177



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 16/189 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +    G ++R +DG+   T G++ VL +V    + +   D      + Q     V  I
Sbjct: 28  RTMGCVVGMLSR-ADGSARFTLGKSSVLCSVYGPTASRPR-DEKLDHAHIQVVFSPVSGI 85

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
            G   R        E  I ++++  +        +   Q+ + V+  D        ++ A
Sbjct: 86  SGTQER------TYEHFIRQVVEAIVLSALH--PRTTIQITLQVLFDDGSILS--TAINA 135

Query: 134 ASAALMLSGLPFEGPVVGAQ-VDYINGQYVLNPRLDE--DQGSLD-LFVSGTQDAVLMVE 189
           A  AL+ +G+P          +    G  +L+P L E  +  S+  L    T   VL V 
Sbjct: 136 AVLALIDAGIPLSKTCSAVTCMISKEGVLLLDPVLLECSEAQSMHILVPDATFSEVLAVH 195

Query: 190 LEANQLSED 198
                 +++
Sbjct: 196 STGLFETDE 204


>gi|328542586|ref|YP_004302695.1| cytochrome c oxidase, subunit I [polymorphum gilvum SL003B-26A1]
 gi|326412332|gb|ADZ69395.1| Cytochrome c oxidase, subunit I [Polymorphum gilvum SL003B-26A1]
          Length = 803

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P++  +    G   +R I+ +                        AA +         +
Sbjct: 622 DPERFTDE-RFGLPTVRDIIAELEK----------PGRDPRPEFKTAALQEGVEEISDLK 670

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
                +G V  V +FGAFV     +DGLVH+SQL+   V     VVK GD V V +L+ D
Sbjct: 671 PGMKLEGTVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVDDPHKVVKAGDIVSVTVLEVD 730

Query: 679 -DRGKIKLSMKV 689
             R +I LSM+ 
Sbjct: 731 QKRKRISLSMRQ 742


>gi|166031537|ref|ZP_02234366.1| hypothetical protein DORFOR_01237 [Dorea formicigenerans ATCC
           27755]
 gi|166028514|gb|EDR47271.1| hypothetical protein DORFOR_01237 [Dorea formicigenerans ATCC
           27755]
          Length = 717

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   + +G   +R IV++             K       E+               + 
Sbjct: 596 KKLAEELEIGEITLRDIVKELE-----------KPGRDPRDEMPKPILRTDVLEMKDLKE 644

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD 678
             I KG V  V+DFGAFV     +DGLVHISQ++ ++ +    +VV  GD V VK++  D
Sbjct: 645 GMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMTNKKFIKHPLEVVSVGDIVDVKVMSVD 704

Query: 679 -DRGKIKLSMKVV 690
             + +I+L+MK V
Sbjct: 705 LKKKRIQLTMKDV 717


>gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I]
          Length = 791

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVA 730

Query: 680 RGKIKLSMKVVD 691
           R ++ L+M++ D
Sbjct: 731 RKRVALTMRLND 742


>gi|260431168|ref|ZP_05785139.1| ribosomal protein S1 [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414996|gb|EEX08255.1| ribosomal protein S1 [Silicibacter lacuscaerulensis ITI-1157]
          Length = 558

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I+++ E   + +G V  + ++GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEESRAEQRAEVISNLTEGQTV-EGVVKNITEYGAFVDL-GGVDGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 226 DMAWRRVNHPSEILSIGETIKVQVIKINKETHRISLGMKQLQEDPW 271



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 269 DPWDLVAAKYPLGSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 328

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 329 SQEVDVMVLEIDGAKRRVSLGLKQTQRNPWE 359



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
            R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER        
Sbjct: 354 QRNPWEVFAETHPEGTQVEGEVKNITEFGLFIGLEGDIDGMVHLSDLSWDERGEDAIQNY 413

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           ++GD V   + + D ++ +I LS+K +
Sbjct: 414 RKGDVVQAVVSEVDVEKERISLSIKAL 440



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +   +V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 443 DKFAEAVGGVKRGSVITVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 501

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 502 DKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 534


>gi|163741546|ref|ZP_02148937.1| S1 RNA binding domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161385280|gb|EDQ09658.1| S1 RNA binding domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 788

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)

Query: 561 DQIRNVIGMGGKVIRGIV------------EQTGAKV------NIDDDGTVKIASSSLAE 602
           D  R ++G  G+ IR I+            E  G +V      +I ++          + 
Sbjct: 572 DVARKIVGACGRDIRQIMGDGSALKSLRAEEFVGDEVGLPTVRDIFEELEKPGRDPRPSF 631

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           + A+ +         +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +
Sbjct: 632 VTASFKDGVETITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHE 691

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           VVK G  V V + + D  R +I L+MK
Sbjct: 692 VVKTGQVVKVTVTEVDVPRKRIALTMK 718


>gi|118479994|ref|YP_897145.1| general stress protein 13 [Bacillus thuringiensis str. Al Hakam]
 gi|228917529|ref|ZP_04081074.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929927|ref|ZP_04092941.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936189|ref|ZP_04098989.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948623|ref|ZP_04110901.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228988145|ref|ZP_04148243.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229032543|ref|ZP_04188508.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
 gi|229093998|ref|ZP_04225085.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|229124443|ref|ZP_04253630.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
 gi|229158502|ref|ZP_04286562.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|229163882|ref|ZP_04291822.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|229187141|ref|ZP_04314287.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|118419219|gb|ABK87638.1| general stress protein 13 [Bacillus thuringiensis str. Al Hakam]
 gi|228596310|gb|EEK53984.1| RNA binding S1 domain protein [Bacillus cereus BGSC 6E1]
 gi|228619503|gb|EEK76389.1| RNA binding S1 domain protein [Bacillus cereus R309803]
 gi|228624938|gb|EEK81705.1| RNA binding S1 domain protein [Bacillus cereus ATCC 4342]
 gi|228658991|gb|EEL14644.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
 gi|228689382|gb|EEL43198.1| RNA binding S1 domain protein [Bacillus cereus Rock3-42]
 gi|228728728|gb|EEL79739.1| RNA binding S1 domain protein [Bacillus cereus AH1271]
 gi|228771556|gb|EEM20024.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228810930|gb|EEM57273.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823436|gb|EEM69268.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829724|gb|EEM75347.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842096|gb|EEM87198.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 119

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 15  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 74

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 75  RKMSLSLKAAKRKQGRILI 93


>gi|326791629|ref|YP_004309450.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
 gi|326542393|gb|ADZ84252.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
          Length = 134

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +I +G V  +  FGAFV       GLVHIS ++   +   +D VK GD V VK+L  
Sbjct: 6   QVGQIIEGTVTGIKPFGAFVSLDETTQGLVHISHITHGYLENINDAVKVGDQVKVKILSI 65

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D ++ KI LS+K   +  
Sbjct: 66  DTEKNKISLSIKETQEKP 83


>gi|291517976|emb|CBK73197.1| Transcriptional accessory protein [Butyrivibrio fibrisolvens 16/4]
          Length = 719

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKG 625
           +G+G   +  IV++             K       ++     +         +     KG
Sbjct: 600 LGVGEMTLEDIVKELE-----------KPGRDPREDMPKPILKSDVLEMKDLKPGMQLKG 648

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
            V  V+DFGAF+     +DGLVHISQ++   +    +VV  GD V V+++  D+ +G+I 
Sbjct: 649 TVRNVIDFGAFIDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVDVEVISVDEKKGRIA 708

Query: 685 LSMK 688
           L+MK
Sbjct: 709 LTMK 712


>gi|269792910|ref|YP_003317814.1| RNA binding S1 domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100545|gb|ACZ19532.1| RNA binding S1 domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 140

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E   + T    V  +  G V  +  +GAFV     +  +VHIS+LS   V K  DV++  
Sbjct: 3   EDKTATTAGVNVGDVVTGTVEHIAPYGAFVRLENGQKAMVHISELSHSYVKKVEDVLELQ 62

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             V  K++  D+RG+I LS+K +     +P
Sbjct: 63  QKVTAKVIKIDERGRIDLSIKALKPRESRP 92


>gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N]
 gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N]
          Length = 790

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MLLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVQ 730

Query: 680 RGKIKLSMKVVD 691
           R ++ L+M++ D
Sbjct: 731 RKRVALTMRLND 742


>gi|115380643|ref|ZP_01467579.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
 gi|115362348|gb|EAU61647.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 571

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKG 625
           I     + + I ++   KV   +     I  S    +E  RE ++  T    +   + KG
Sbjct: 154 IRPVRNLDQYISKEFEFKVIKFNKKRGNIVLSRRVLLEKQREEMKKETLKNLKEGAVLKG 213

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
            V  + D+GAF+   G  DGL+HI+ +S  R+   S++   GD V V +L FD  + ++ 
Sbjct: 214 VVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRVVVLKFDPAQERVS 272

Query: 685 LSMKVVDQNTG 695
           L +K + ++  
Sbjct: 273 LGLKQIQEDPW 283



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++++   V    KG+V KV DFGAFV      +GLVH+S+L  ERV    DVV+E 
Sbjct: 455 DPWETLSERTPVGSRVKGKVTKVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEA 514

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
             V VK++D +    K+ LS+K +
Sbjct: 515 QEVDVKIIDINTQDRKVALSIKAL 538



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  +L +  + + +  L+  +    ++ +          I +GG   +  I + +  ++
Sbjct: 185 SRRVLLEKQREEMKKETLKNLKEGAVLKGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRI 244

Query: 586 -------NIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVM 631
                  N+ D+  V +     A+        +   +      +   V    +G+VV + 
Sbjct: 245 GHPSEMFNVGDEVRVVVLKFDPAQERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSIT 304

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
           D+GAF+      +GLVH+S++S  +R+   S +++ G  V   +LD D +  +I L MK 
Sbjct: 305 DYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQ 364

Query: 690 VDQNTG 695
           ++QN  
Sbjct: 365 IEQNPW 370



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           K++    E     ++ID             E    +     + D   +  + KGQ+  V 
Sbjct: 336 KILEVGQEVEAVVLDIDPKAKRIALGMKQIE----QNPWTLLEDKYPIGSVIKGQIRNVT 391

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           DFG FV      DGLVH+S +S  +R+    ++ K+GD V    L+ D +  +  L +K 
Sbjct: 392 DFGIFVGVEEGVDGLVHVSDISWTQRIKHPGELYKKGDEVEAVXLNIDVENERFSLGIKQ 451

Query: 690 VDQNTGKPI 698
           +  +  + +
Sbjct: 452 LQPDPWETL 460



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A +  A    R    + +  +I KG VV+V    A V      +G V IS+ ++ R   T
Sbjct: 19  AAMFEASLKERGGDGILKEGEIVKGTVVQVTKDYAIVDIGYKSEGQVPISEFTSPRGEIT 78

Query: 661 SDVVKEGDTVWVKLLDF-DDRGKIKLS 686
              VK GD V V L    +D G + LS
Sbjct: 79  ---VKAGDAVEVLLESRENDTGMVVLS 102


>gi|310821587|ref|YP_003953945.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
 gi|309394659|gb|ADO72118.1| 30S ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 571

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKG 625
           I     + + I ++   KV   +     I  S    +E  RE ++  T    +   + KG
Sbjct: 154 IRPVRNLDQYISKEFEFKVIKFNKKRGNIVLSRRVLLEKQREEMKKETLKNLKEGAVLKG 213

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
            V  + D+GAF+   G  DGL+HI+ +S  R+   S++   GD V V +L FD  + ++ 
Sbjct: 214 VVKNLTDYGAFIDL-GGIDGLLHITDMSWGRIGHPSEMFNVGDEVRVVVLKFDPAQERVS 272

Query: 685 LSMKVVDQNTG 695
           L +K + ++  
Sbjct: 273 LGLKQIQEDPW 283



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++++   V    KG+V KV DFGAFV      +GLVH+S+L  ERV    DVV+E 
Sbjct: 455 DPWETLSERTPVGSRVKGKVTKVTDFGAFVEIEPGIEGLVHVSELREERVENPRDVVQEA 514

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
             V VK++D +    K+ LS+K +
Sbjct: 515 QEVDVKIIDINTQDRKVALSIKAL 538



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 17/186 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  +L +  + + +  L+  +    ++ +          I +GG   +  I + +  ++
Sbjct: 185 SRRVLLEKQREEMKKETLKNLKEGAVLKGVVKNLTDYGAFIDLGGIDGLLHITDMSWGRI 244

Query: 586 -------NIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVM 631
                  N+ D+  V +     A+        +   +      +   V    +G+VV + 
Sbjct: 245 GHPSEMFNVGDEVRVVVLKFDPAQERVSLGLKQIQEDPWHRADEKYPVGTRVRGKVVSIT 304

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
           D+GAF+      +GLVH+S++S  +R+   S +++ G  V   +LD D +  +I L MK 
Sbjct: 305 DYGAFIEIEQGVEGLVHVSEMSWTKRLKHPSKILEVGQEVEAVVLDIDPKAKRIALGMKQ 364

Query: 690 VDQNTG 695
           ++QN  
Sbjct: 365 IEQNPW 370



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           K++    E     ++ID             E    +     + D   +  + KGQ+  V 
Sbjct: 336 KILEVGQEVEAVVLDIDPKAKRIALGMKQIE----QNPWTLLEDKYPIGSVIKGQIRNVT 391

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           DFG FV      DGLVH+S +S  +R+    ++ K+GD V   +L+ D +  +  L +K 
Sbjct: 392 DFGIFVGVEEGVDGLVHVSDISWTQRIKHPGELYKKGDEVEAVMLNIDVENERFSLGIKQ 451

Query: 690 VDQNTGKPI 698
           +  +  + +
Sbjct: 452 LQPDPWETL 460



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A +  A    R    + +  +I KG VV+V    A V      +G V IS+ ++ R   T
Sbjct: 19  AAMFEASLKERGGDGILKEGEIVKGTVVQVTKDYAIVDIGYKSEGQVPISEFTSPRGEIT 78

Query: 661 SDVVKEGDTVWVKLLDF-DDRGKIKLS 686
              VK GD V V L    +D G + LS
Sbjct: 79  ---VKAGDAVEVLLESRENDTGMVVLS 102


>gi|254468796|ref|ZP_05082202.1| 30S ribosomal protein S1 [beta proteobacterium KB13]
 gi|207087606|gb|EDZ64889.1| 30S ribosomal protein S1 [beta proteobacterium KB13]
          Length = 500

 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E    K++   +  V    + L E   A     SI +        KG +  + D+GAFV
Sbjct: 163 TELKVIKIDKKRNNIVVSRKAVLEEQMGA--DRESIIESLTEGATVKGIIKNITDYGAFV 220

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  DGL+HI+ L+ +R+   S+V+  GD +  K+L +D D+ ++ L +K +  +  
Sbjct: 221 DL-GGIDGLLHITDLAWKRIKHPSEVLNVGDEIEAKVLKYDQDKNRVSLGLKQLGDDPW 278



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 17/187 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  +L E      ES ++       V+ +          + +GG   +  I +    ++
Sbjct: 180 SRKAVLEEQMGADRESIIESLTEGATVKGIIKNITDYGAFVDLGGIDGLLHITDLAWKRI 239

Query: 586 -------NIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
                  N+ D+   K+      +   +        +    +     V+    G+V  + 
Sbjct: 240 KHPSEVLNVGDEIEAKVLKYDQDKNRVSLGLKQLGDDPWVGLERRYPVSTRIFGKVSNLT 299

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           D+GAFV      +GLVH+S++    +    + VV  GD V V +L+ D+ + ++ L +K 
Sbjct: 300 DYGAFVEIESGIEGLVHVSEMDWTNKNIHPTKVVNLGDEVEVMILEVDEGKRRLSLGIKQ 359

Query: 690 VDQNTGK 696
             +N  +
Sbjct: 360 CKENPWQ 366



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 94/262 (35%), Gaps = 34/262 (12%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
               G++K+  D+    D+ G +   H+  + +K     S +  +  +++   +  +   
Sbjct: 204 ATVKGIIKNITDYGAFVDLGGIDGLLHITDLAWKRIKHPSEVLNVGDEIEAKVLKYDQ-- 261

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                    +  +   + ++  +  + L    P    +      + +      I  G + 
Sbjct: 262 --------DKNRVSLGLKQLGDDPWVGLERRYPVSTRIFGKVSNLTDYGAFVEIESGIEG 313

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      NI     V +       I    E                 ++  +  +
Sbjct: 314 LVHVSEMDWTNKNIHPTKVVNLGDEVEVMILEVDEGKRRLSLGIKQCKENPWQAFENDHK 373

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDF 677
             +  KG +  + DFG F+   G  DGL+H+S +S TE         K+GD V  K+L  
Sbjct: 374 QGETIKGSIKSITDFGIFIGLDGGIDGLIHLSDISATESNEDAVKNYKKGDEVEAKILAI 433

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D+ +I L +K +  +  + +
Sbjct: 434 DVDKERISLGIKQLSADYTEDV 455


>gi|313901428|ref|ZP_07834889.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313468306|gb|EFR63759.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 120

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  +  FGAFV     R GLVHIS+++   V   SD +  GDTV VK+L  D
Sbjct: 7   VGDIVEGTVDGITGFGAFVKLPDGRTGLVHISEVAHGWVENVSDHLSVGDTVKVKILRID 66

Query: 679 D-RGKIKLSMKVVDQNTG 695
           +   KI LS+K       
Sbjct: 67  EANNKIALSIKATQPAPA 84


>gi|116873380|ref|YP_850161.1| 30S ribosomal protein S1 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742258|emb|CAK21382.1| 30S ribosomal protein S1 [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 381

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    + T   + ID +      S               I +   V  + +G+VV+++
Sbjct: 229 EVLEEGQKVTVKVIGIDPENERISLSIKANLPG----PWDGIAEKAPVGSVLEGKVVRLV 284

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            FGAFV      +GLVHISQ+S + +    +V+ EG T+ VK+L+ ++   ++ LS+K +
Sbjct: 285 TFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGQTIEVKVLEVNEADKRLSLSIKDL 344

Query: 691 DQNTGKP 697
                + 
Sbjct: 345 QDAPVEE 351



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + +     G  +   V +        ++  V ++  ++ E E A +    ++++ E  
Sbjct: 135 HFVEDFADYKGTTLTFKVVEFEP-----ENNRVILSHRAVVETEKASQKQALLSEIKEG- 188

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G V ++ +FGAFV   G  DGLVHISQ+S + +A   +V++EG  V VK++  D  
Sbjct: 189 DVIEGVVERLANFGAFVDI-GGVDGLVHISQISYQHIATPQEVLEEGQKVTVKVIGIDPE 247

Query: 681 G-KIKLSMKVVDQNTG 695
             +I LS+K       
Sbjct: 248 NERISLSIKANLPGPW 263



 Score = 44.1 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDVLV-LSKRKVDAE 89


>gi|332969908|gb|EGK08910.1| general stress protein 13 [Desmospora sp. 8437]
          Length = 124

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 43/72 (59%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G+VV +  FGAFV       GLVHISQ+S++ V K  D +  GD+V  K+L  D  G
Sbjct: 9   VVTGEVVAIKPFGAFVKLETGETGLVHISQISSKFVEKVEDELTVGDSVKAKVLSIDSSG 68

Query: 682 KIKLSMKVVDQN 693
           KI LS+K +  +
Sbjct: 69  KISLSIKALTDD 80


>gi|302390897|ref|YP_003826717.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
 gi|302202974|gb|ADL11652.1| Tex-like protein [Acetohalobium arabaticum DSM 5501]
          Length = 718

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIY 623
           + IG+G   +  I               VK       E+            D  +   I 
Sbjct: 603 DKIGVGFPTLLDI-----------KKNLVKPGRDPREEMSKPVFKQEVMSWDDLKSGMIL 651

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G++  V+DFGAFV      DGLVHIS++S+E V    +VVK GD V +K+L+ D  R +
Sbjct: 652 QGEIRNVVDFGAFVDIGVKEDGLVHISEMSSEYVEDPFEVVKVGDVVKIKILEIDSARKR 711

Query: 683 IKLSM 687
           I L+M
Sbjct: 712 IALTM 716


>gi|91201436|emb|CAJ74496.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 718

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR--EMIRSITDVPEVNKIYKGQVVKVMD 632
           + + E+TG     D    +        E   A   +   +  +  E      G V  + +
Sbjct: 593 KYVTEETGLPTLNDILSELDKPGRDPREKFEAFSFQDDINAVEDLETGMTLPGIVTNITN 652

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           FGAFV     +DGLVHIS ++ + V   +DVV     V V +++ D  R +I LSMK
Sbjct: 653 FGAFVDIGVHQDGLVHISNMADKYVKNPADVVSVHQKVMVTVIEVDIGRKRISLSMK 709


>gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 246

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 11/227 (4%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR     R +    G L    GS     G ++    V  G RE     
Sbjct: 5   KEYVSPAGLRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASV-FGPRESLHKQ 63

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           ++     +            A          SR     G    +    V+  +      +
Sbjct: 64  EAKH--DKALVTCEVAVAAFAGENRRNPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ + DG+  +A +  + LAL+DA V +   V  I  G++ +     +L D++ DE
Sbjct: 122 HIYIEVLQQDGNEKIACINAACLALIDANVAMRDAVCCIDAGILDE----HMLIDLTNDE 177

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISEN----IMVMALQQAKR 526
                     A T      +        +  +    ++  A + A +
Sbjct: 178 LRSQCPVIAAAFTGHDTRNIIWLETTSRLPPDSATRLLKCAEEGATK 224



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRES- 82
           DG+   T G++ V A+V   R     Q    D   +T       +A      G  RR   
Sbjct: 37  DGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALVTCEVAVAAFA------GENRRNPQ 90

Query: 83  RPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R +     I   + +  R   L S+   ++  + I V+Q D      +  + AA  AL+ 
Sbjct: 91  RRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGNEK--IACINAACLALID 148

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
           + +     V       ++   +++   DE + 
Sbjct: 149 ANVAMRDAVCCIDAGILDEHMLIDLTNDELRS 180


>gi|319792457|ref|YP_004154097.1| ribosomal protein s1 [Variovorax paradoxus EPS]
 gi|315594920|gb|ADU35986.1| ribosomal protein S1 [Variovorax paradoxus EPS]
          Length = 562

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTLEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L F
Sbjct: 191 EGA-VVRGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    ++     +    G+V  + D+GAFV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWMGVSRRYPQSTRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPNKIVSL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCKANPWQE 356



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 34/258 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            +  G+VK+  ++    D+ G +   H+  M ++     S +     +     I+  I+ 
Sbjct: 193 AVVRGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVQAGQE-----ITAKILK 247

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P+   +      I +      +  G + 
Sbjct: 248 FDTEKNRVS-----LGLKQMGDDPWMGVSRRYPQSTRLFGKVTNIADYGAFVELEPGIEG 302

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      NI  +  V +       +    E                 +      +
Sbjct: 303 LVHVSEMDWTNKNIAPNKIVSLGDEVEVMVLEIDEDKRRISLGMKQCKANPWQEFAQNTK 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDF 677
                KG +  + DFG FV      DGLVH+S LS     +T+    K+G  V   +L  
Sbjct: 363 RGDRVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEAGETAVRNYKKGQEVEAIVLAV 422

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D DR +I L +K +D + 
Sbjct: 423 DVDRERISLGIKQLDSDP 440



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T V +  +I  G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFTTVNDKGQIVTGKVKTVDARGAEIDLGEDILGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAIVVNVDRKTRNIQLSIKQKD 523


>gi|261420366|ref|YP_003254048.1| general stress protein 13 [Geobacillus sp. Y412MC61]
 gi|261376823|gb|ACX79566.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61]
          Length = 124

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 12  IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 71

Query: 681 GKIKLSMKVVDQNTGKP 697
            +  LS+K ++    K 
Sbjct: 72  RRASLSLKALEPAGEKE 88


>gi|144898831|emb|CAM75695.1| 30S ribosomal protein S1 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 560

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +I +G V  + D+GAFV   G  DGL+H++
Sbjct: 165 GNIVVSRRAVLEETRAEQRSELIENLKEG-QILEGVVKNITDYGAFVDL-GGVDGLLHVT 222

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++ +R+   S+ +  G TV V+++ F+ +  +I L +K +D +  +
Sbjct: 223 DIAWKRINHPSEALHIGQTVKVQVIRFNPETQRISLGIKQLDADPWE 269



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 266 DPWEGVEAKYPVQAKFVGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 325

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
              V V +LD D +  +I L +K    N  +  V
Sbjct: 326 SQEVEVMVLDVDPQKRRISLGLKQCLSNPWESFV 359



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEG 667
              S  +   V  + +G+V  + +FG F+   G  DG+VH+S LS ++    +    K+G
Sbjct: 354 PWESFVEKFPVGTLVEGEVKNITEFGLFIGLSGDIDGMVHMSDLSWDKSGDAAIAEYKKG 413

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           D V  K+LD D ++ +I L +K +  +  +  V
Sbjct: 414 DVVNAKVLDVDVEKERISLGIKQLGADPFQDAV 446



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      +   I    V +V + G  V   G   G +  S+LS ER  +  +    G
Sbjct: 440 DPFQDAVANVKKGDIVTCAVTQVTENGLEVQVDGMT-GFIRKSELSRERSEQRPERFAVG 498

Query: 668 DTVWVKLLDFDDRG--KIKLSMKVVDQNTGK 696
           + +  K+    ++G  K+ LS+K  + +  K
Sbjct: 499 EKIDAKVTMI-EKGARKVTLSVKAREIDEEK 528


>gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50]
 gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50]
          Length = 791

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVA 730

Query: 680 RGKIKLSMKVVD 691
           R ++ L+M++ D
Sbjct: 731 RKRVALTMRLND 742


>gi|310659084|ref|YP_003936805.1| polyribonucleotide nucleotidyltransferase [Clostridium sticklandii
           DSM 519]
 gi|308825862|emb|CBH21900.1| Polyribonucleotide nucleotidyltransferase (General stress protein
           13) [Clostridium sticklandii]
          Length = 144

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G+VV++  FGAF+     + GLVHISQ+S + + + +D + EGDTV VK++  
Sbjct: 6   EVGMIVEGKVVQLKPFGAFISLADNKRGLVHISQISHDYIKEVNDALSEGDTVKVKIISI 65

Query: 678 D-DRGKIKLSMKVVDQNT 694
           + D GKI LS+K  +   
Sbjct: 66  EPDSGKISLSIKDANPKP 83


>gi|29840228|ref|NP_829334.1| 30S ribosomal protein S1 [Chlamydophila caviae GPIC]
 gi|29834576|gb|AAP05212.1| ribosomal protein S1 [Chlamydophila caviae GPIC]
          Length = 581

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+NID    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINIDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  +G V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 INIGERRRGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 183 KILKINIDRRNVVVSRRELLEAERISKKAELIEQINIGERRRGIVKNITDFGVFLDLDGI 242

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 243 DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHN-----PWED 297

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K   G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V 
Sbjct: 298 IEKKYPPGKRIVGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVE 357

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
             +L    D GKI L +K  + N    I
Sbjct: 358 AIVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD+V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKV 543

Query: 684 KLSMKV 689
            LS+K 
Sbjct: 544 SLSVKE 549



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 102/249 (40%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +          ++ +  P    + I  + I  +I +        V
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRIVGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNV 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+    + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVHAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LSSNPWNEI 472



 Score = 39.1 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    +    E + I KGQ+++ +  G  V      +  +
Sbjct: 106 DEEGKVVLS---REKATRQRQWEHILAHCEEGS-IVKGQIIRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + DR  + +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINIDRRNVVVSRRELLE 203


>gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I]
 gi|34978385|sp|Q45388|TEX_BORPE RecName: Full=Protein tex
 gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I]
 gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS]
          Length = 791

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVA 730

Query: 680 RGKIKLSMKVVD 691
           R ++ L+M++ D
Sbjct: 731 RKRVALTMRLND 742


>gi|332703922|ref|ZP_08424010.1| RNA binding S1 domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554071|gb|EGJ51115.1| RNA binding S1 domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 489

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 115/288 (39%), Gaps = 39/288 (13%)

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL--SDISGDEDHLGHMDF 491
           G+ SM  + G+  + +     + + V G     V     F  +   DI   ED   ++D 
Sbjct: 100 GAGSMEALRGAYESRVPVEGKVKEAVKGGFSVEVMRKRAFCPVSQMDIQYVEDPSVYVDN 159

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
                   I   + + +   +S   ++   Q+    +     +   ++  +  +L  +  
Sbjct: 160 TYEFM---IIKFEQNGRNVVLSRRELLAQAQKESAAKFQAEIKPGAIIEGTVSKLMPYGA 216

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA------ 605
            VE+M             G + +  I E + ++V+ D    V+      A++ A      
Sbjct: 217 FVELM------------PGLEGMAHISELSWSRVD-DPSAAVQPGQRVKAKVLAVEPGKK 263

Query: 606 -------------AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                          +   ++ D  +     +G+V+++ DFGAFV      +GLVH+S++
Sbjct: 264 EGRLKISLSLKQTEADPWTTLGDRFQAGDTVQGKVIRLADFGAFVEIAPGIEGLVHVSEM 323

Query: 653 S-TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S T R++K SDVV  G  + VK+ D D    +I LS++    +  + +
Sbjct: 324 SYTRRISKPSDVVNPGQEISVKIKDVDLANRRISLSLRDTAGDPWEQV 371



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 36/77 (46%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    + +  ++ + Y G V K   FG F+       GL+  S++S  +   + + +K
Sbjct: 364 AGDPWEQVPEKFKIGQAYSGVVEKQEAFGIFIQLEPGVTGLLPRSRISKSQKPASFEALK 423

Query: 666 EGDTVWVKLLDFDDRGK 682
            GDTV + + + +   +
Sbjct: 424 PGDTVQITVDEINPTER 440


>gi|319654934|ref|ZP_08009008.1| hypothetical protein HMPREF1013_05630 [Bacillus sp. 2_A_57_CT2]
 gi|317393359|gb|EFV74123.1| hypothetical protein HMPREF1013_05630 [Bacillus sp. 2_A_57_CT2]
          Length = 151

 Score = 87.3 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  +  FGAFV       GLVHIS+++ + V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKLKGKVTGITKFGAFVELPEGSTGLVHISEVADKYVKDINEHLKVGDMVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           +  GKI LS+K       +
Sbjct: 64  EKDGKIGLSIKKAKDRPER 82


>gi|326436604|gb|EGD82174.1| DEAH box polypeptide 8 [Salpingoeca sp. ATCC 50818]
          Length = 1288

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 6/90 (6%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE--RVAKTSDVVKEGDT 669
             P   K+Y+G+V  +M +G FV   G R   DG+VH+S +S     VA  +DVVK G T
Sbjct: 307 PEPVQGKVYEGKVTGIMQYGCFVSLLGVRGRPDGMVHVSNMSPTGAHVADPNDVVKRGQT 366

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           V+VK+    +  KI L+MK +DQ+TG+ + 
Sbjct: 367 VYVKVQSRIN-NKISLTMKDIDQSTGEDVA 395


>gi|288572996|ref|ZP_06391353.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568737|gb|EFC90294.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 160

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            +  G V +VM +GAFV     +  +VHISQLS   +   SDVV     +  K++  DD+
Sbjct: 17  DVVTGVVEQVMPYGAFVRLSTGQRAMVHISQLSHNFIKNVSDVVSAEQEITAKVIKIDDK 76

Query: 681 GKIKLSMKVVDQNTGKP 697
           G+I LS+K + +   +P
Sbjct: 77  GRIDLSIKAMSEPPARP 93


>gi|169334402|ref|ZP_02861595.1| hypothetical protein ANASTE_00802 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259119|gb|EDS73085.1| hypothetical protein ANASTE_00802 [Anaerofustis stercorihominis DSM
           17244]
          Length = 714

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 27/263 (10%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ES  +S    +  +S++L++    IS  VA   +   ++   +   S++         
Sbjct: 473 VVESVVNSVGVDLNTASVSLLEYVAGISSAVAKNIVAYREENGIYNKRSELLKVPKLGKK 532

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    +      +   G+         + AK       + +  V +E+   L E
Sbjct: 533 SYEQCAGFLR-VAESLNPLDNSGVHPET----YKAAKNVLELTGHTLKDVNTENISDLEE 587

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
                    I   +I     +G   ++ I+++            +K       +I A   
Sbjct: 588 EAK-----KIGLSEIAEKCEIGIPTLKDILKEL-----------IKPGRDPREDIPAPI- 630

Query: 609 MIRSITDVPE---VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            +RS     E   V    KG V  V+DFGAFV     +DGLVHISQ+S   +   SD++K
Sbjct: 631 -LRSDVLEMEDLIVGMKLKGTVRNVVDFGAFVDIGVHQDGLVHISQISNTFIKHPSDILK 689

Query: 666 EGDTVWVKLLDFD-DRGKIKLSM 687
            GD V V +LD + D+ +I LSM
Sbjct: 690 TGDIVEVTVLDVNKDKNRISLSM 712


>gi|303326814|ref|ZP_07357256.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
 gi|302862802|gb|EFL85734.1| putative ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ +D G ++I+ S     +A  +      +      + +G+VV++  FGAFV      +
Sbjct: 258 ISKNDKGQIRISLSRK---QAEGDPWLDAPERLSAGAVVQGKVVRLAPFGAFVELLPGVE 314

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GL+H+S++S  +RV K  +V+  G+TV VK+ D + +  +I LS++  + +  + 
Sbjct: 315 GLIHVSEMSWAKRVNKPEEVLSAGETVSVKIKDVNTETRRIALSLRDAEGDPWQD 369



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +++ G   + S         +E +  + +  +     +G++ ++  FGAF+    A +
Sbjct: 166 IRVENRGRNVVVSRRALLERERQENLDKLLETLKEGDTVEGRITRLAPFGAFMELAPAVE 225

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRG--KIKLSMKVVDQNTGKP 697
           G++H+S+LS  RV    + V  GD V VK+L    +D+G  +I LS K  + +    
Sbjct: 226 GMIHLSELSWSRVGAADEAVSPGDLVRVKVLGISKNDKGQIRISLSRKQAEGDPWLD 282


>gi|229020135|ref|ZP_04176911.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
 gi|229026363|ref|ZP_04182720.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|229076280|ref|ZP_04209245.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|229099361|ref|ZP_04230291.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|229105521|ref|ZP_04236155.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|229141618|ref|ZP_04270149.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|229199050|ref|ZP_04325733.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|228584321|gb|EEK42456.1| RNA binding S1 domain protein [Bacillus cereus m1293]
 gi|228641816|gb|EEK98116.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST26]
 gi|228677791|gb|EEL32034.1| RNA binding S1 domain protein [Bacillus cereus Rock3-28]
 gi|228683985|gb|EEL37933.1| RNA binding S1 domain protein [Bacillus cereus Rock3-29]
 gi|228706715|gb|EEL58923.1| RNA binding S1 domain protein [Bacillus cereus Rock4-18]
 gi|228734826|gb|EEL85464.1| RNA binding S1 domain protein [Bacillus cereus AH1272]
 gi|228741144|gb|EEL91366.1| RNA binding S1 domain protein [Bacillus cereus AH1273]
          Length = 119

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 15  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 74

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 75  RKMSLSLKAAKRKQGRILI 93


>gi|329942819|ref|ZP_08291598.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|328815079|gb|EGF85068.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
          Length = 584

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 97/247 (39%), Gaps = 28/247 (11%)

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           +P+S+ +       +  G +  +  D + DE+       KV  +    T  +        
Sbjct: 79  IPMSEFIESSE--GLVLGAEVEVYLDQTEDEEG------KVVLSREKATRQRQ------- 123

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
               ++   ++    +  I+ ++   L      +  F P      I   +I+N+    GK
Sbjct: 124 -WEHILAHCEEGSIVKGQIIRKVKGGLIVDIG-MEAFLPGS---QIDNKKIKNLDDYVGK 178

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           V    +     K+NID    V      L            + +   + +  KG V  + D
Sbjct: 179 VCEFKI----LKINIDRRNVVVSRRELLEA--ERISKKAELIEQITIGERRKGIVKNITD 232

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FG F+      DGL+HI+ ++ +R+   S++V+    + V +L  D ++G++ L +K  +
Sbjct: 233 FGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKE 291

Query: 692 QNTGKPI 698
            N  + I
Sbjct: 292 HNPWEDI 298



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 183 KILKINIDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGI 242

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 243 DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHN-----PWED 297

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K   G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V 
Sbjct: 298 IEKKYPPGKRITGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVE 357

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
             +L    D GKI L +K  + N    I
Sbjct: 358 AIVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I ++     +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD
Sbjct: 468 PWNEIEEMFPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGD 527

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
           +V  K++  D D  K+ LS+K 
Sbjct: 528 SVSAKVIKLDPDHKKVSLSVKE 549



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 102/249 (40%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +          ++ +  P    + I  + I  +I +        V
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRITGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNV 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+    + S    E + +  + ++  +  +  +         + ++  + 
Sbjct: 344 VDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVRAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G  V   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LSSNPWNEI 472


>gi|257084198|ref|ZP_05578559.1| S1 RNA binding domain-containing protein [Enterococcus faecalis
           Fly1]
 gi|256992228|gb|EEU79530.1| S1 RNA binding domain-containing protein [Enterococcus faecalis
           Fly1]
          Length = 157

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
            D GKI LS++   +  
Sbjct: 64  GDDGKIGLSIRKAQEPA 80


>gi|239814621|ref|YP_002943531.1| 30S ribosomal protein S1 [Variovorax paradoxus S110]
 gi|239801198|gb|ACS18265.1| ribosomal protein S1 [Variovorax paradoxus S110]
          Length = 562

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTLEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L F
Sbjct: 191 EGA-VVRGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    ++     +    G+V  + D+GAFV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWMGVSRRYPQSTRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPNKIVSL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCKANPWQE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 34/258 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            +  G+VK+  ++    D+ G +   H+  M ++     S +     +     I+  I+ 
Sbjct: 193 AVVRGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVQAGQE-----ITAKILK 247

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P+   +      I +      +  G + 
Sbjct: 248 FDTEKNRVS-----LGLKQMGDDPWMGVSRRYPQSTRLFGKVTNIADYGAFVELEPGIEG 302

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      NI  +  V +       +    E                 +      +
Sbjct: 303 LVHVSEMDWTNKNIAPNKIVSLGDEVEVMVLEIDEDKRRISLGMKQCKANPWQEFAQNTK 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDF 677
                KG +  + DFG FV      DGLVH+S LS     +T+    K+G  V   +L  
Sbjct: 363 RGDRVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEAGETAVRNYKKGQEVEAIVLAV 422

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D DR +I L +K +D + 
Sbjct: 423 DVDRERISLGIKQLDSDP 440



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T V +  +I  G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFTTVNDKGQIVTGKVKTVDARGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAIVVNVDRKTRNIQLSIKQKD 523


>gi|15644630|ref|NP_229244.1| ribosomal protein S1 [Thermotoga maritima MSB8]
          Length = 543

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +N+D +      S   A+     +   +I D   VN +  G+V  ++  GAFV      +
Sbjct: 328 INVDKENRKLTLSYRKAKG----DPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVE 383

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           G V +S++S +R+ +  +++K G+ V VK+L  D   + I LS+K   +N  +
Sbjct: 384 GFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWE 436



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 538 VLSESRLQLGEFTPRV---EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           V  E    +  F PR        I P+   +++  G  +   I+E         D     
Sbjct: 201 VEVEISEGVRGFIPRSELSYDTRISPE---DIVKPGQNITAKIIEL--------DKVKKN 249

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  S    +    +    + +   V K+  G+V  +  FG FV      +GLV  S++  
Sbjct: 250 VILSLKKLMP---DPWEKVEEKYPVGKVVSGEVTSIHPFGFFVRLEPGVEGLVPRSEVFW 306

Query: 655 ERVAKT-SDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
               K+  +VV  GD V V++++ D   + + LS +    +  + I
Sbjct: 307 GNARKSLEEVVSVGDLVEVEVINVDKENRKLTLSYRKAKGDPWENI 352



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I       +V  I +G V  + + G  V       G +  S+LS +      D+VK G
Sbjct: 174 KKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIVKPG 233

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
             +  K+++ D  +  + LS+K +  +  + +
Sbjct: 234 QNITAKIIELDKVKKNVILSLKKLMPDPWEKV 265


>gi|30022942|ref|NP_834573.1| general stress protein 13 [Bacillus cereus ATCC 14579]
 gi|75761837|ref|ZP_00741767.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903399|ref|ZP_04067528.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
 gi|228910735|ref|ZP_04074545.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|228923634|ref|ZP_04086913.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228942063|ref|ZP_04104604.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955163|ref|ZP_04117173.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228968005|ref|ZP_04129013.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228974993|ref|ZP_04135553.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981584|ref|ZP_04141880.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|229048593|ref|ZP_04194151.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|229072384|ref|ZP_04205587.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|229082146|ref|ZP_04214611.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|229112343|ref|ZP_04241881.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|229130160|ref|ZP_04259120.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|229147452|ref|ZP_04275800.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|229181198|ref|ZP_04308529.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|229193166|ref|ZP_04320118.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
 gi|29898501|gb|AAP11774.1| S1-type RNA-binding domain [Bacillus cereus ATCC 14579]
 gi|74490670|gb|EAO53956.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228590286|gb|EEK48153.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
 gi|228602252|gb|EEK59742.1| RNA binding S1 domain protein [Bacillus cereus 172560W]
 gi|228635997|gb|EEK92479.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST24]
 gi|228653274|gb|EEL09152.1| RNA binding S1 domain protein [Bacillus cereus BDRD-Cer4]
 gi|228670991|gb|EEL26297.1| RNA binding S1 domain protein [Bacillus cereus Rock1-15]
 gi|228701138|gb|EEL53659.1| RNA binding S1 domain protein [Bacillus cereus Rock4-2]
 gi|228710707|gb|EEL62679.1| RNA binding S1 domain protein [Bacillus cereus F65185]
 gi|228722712|gb|EEL74099.1| RNA binding S1 domain protein [Bacillus cereus AH676]
 gi|228778069|gb|EEM26340.1| RNA binding S1 domain protein [Bacillus thuringiensis Bt407]
 gi|228784698|gb|EEM32717.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228791676|gb|EEM39270.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228804504|gb|EEM51113.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817579|gb|EEM63663.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228835995|gb|EEM81357.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848907|gb|EEM93751.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 200]
 gi|228856235|gb|EEN00766.1| RNA binding S1 domain protein [Bacillus thuringiensis IBL 4222]
          Length = 119

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 15  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 74

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 75  RKMSLSLKAAKRKQGRILI 93


>gi|222056100|ref|YP_002538462.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
 gi|221565389|gb|ACM21361.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
          Length = 756

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++              A      +     +   I +G V  V  FGAFV     +DG
Sbjct: 615 DIIEELKKPGRDPRAKFETATLRDDVTTIGDLQEGMILQGTVTNVAAFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVH+S LS   V + S+ VK G+ V VK+L  D  R +I LS+K  +    K 
Sbjct: 675 LVHVSHLSRRFVREASEAVKVGEIVKVKVLAVDLQRKRISLSIKEAEPGREKE 727


>gi|88861076|ref|ZP_01135711.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Pseudoalteromonas
           tunicata D2]
 gi|88817004|gb|EAR26824.1| conserved protein with nucleic acid-binding protein-like domain
           (Transcriptional accessory protein) [Pseudoalteromonas
           tunicata D2]
          Length = 772

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK GD V 
Sbjct: 641 EKVSDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVK 700

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+++ D  R +I  +M++ D+
Sbjct: 701 VKVVEVDAARNRISFTMRLNDE 722


>gi|254293974|ref|YP_003059997.1| RNA binding S1 domain protein [Hirschia baltica ATCC 49814]
 gi|254042505|gb|ACT59300.1| RNA binding S1 domain protein [Hirschia baltica ATCC 49814]
          Length = 736

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V  FGAFV     +DGLVHISQL+ + V+   D+VK GD V V +++ D  R 
Sbjct: 658 LEGTVTNVTAFGAFVDIGVHQDGLVHISQLADKFVSDPHDIVKAGDIVNVTVMEVDVQRK 717

Query: 682 KIKLSMKVVDQ 692
           +I LSMK   +
Sbjct: 718 RIGLSMKSEPE 728


>gi|261367121|ref|ZP_05980004.1| RNA-binding protein [Subdoligranulum variabile DSM 15176]
 gi|282571244|gb|EFB76779.1| RNA-binding protein [Subdoligranulum variabile DSM 15176]
          Length = 154

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 45/79 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G+V  +  FGAFV     + GLVHIS++S E V   S V+++G TV VK+L  
Sbjct: 4   QVGDIVEGKVTGIKPFGAFVSLPEGKTGLVHISEVSYEFVQDLSAVLEDGQTVTVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
              GKI LS+K       +
Sbjct: 64  APDGKIALSIKRTQPAPER 82


>gi|186476164|ref|YP_001857634.1| RNA-binding S1 domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184192623|gb|ACC70588.1| RNA binding S1 domain protein [Burkholderia phymatum STM815]
          Length = 780

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVD 691
           R +I L+M++ D
Sbjct: 717 RQRISLTMRMDD 728


>gi|117924758|ref|YP_865375.1| RNA-binding S1 domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608514|gb|ABK43969.1| RNA binding S1 domain protein [Magnetococcus sp. MC-1]
          Length = 773

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V +FGAFV     +DGLVHIS +S + V     V + G  V 
Sbjct: 644 EDIKDLQPGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAMSNQFVKDPHQVTRAGAVVQ 703

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK+++ D +R +I LSM++ DQ   +
Sbjct: 704 VKVMEIDLNRRRIALSMRLEDQPGAE 729


>gi|317488041|ref|ZP_07946622.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
 gi|316912871|gb|EFV34399.1| hypothetical protein HMPREF1023_00320 [Eggerthella sp. 1_3_56FAA]
          Length = 717

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D +   +G+G   +R IV +      ++  G      +              +T   E
Sbjct: 593 DVDALAAELGVGAPTLRDIVSE------LEKPGRDPRDDAPEVVFSEGVRDFDDLTVGME 646

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +     G V  V+DFGAFV     +DGLVH+S+++   V   S+VV  GDTV V +   D
Sbjct: 647 L----TGTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID 702

Query: 679 -DRGKIKLSM 687
            DRGKI LSM
Sbjct: 703 KDRGKISLSM 712


>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
          Length = 282

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 12/213 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           + +  D   R DGR +  +R+I  + G++ +  GS+    G+T+ I  V    RE    V
Sbjct: 28  KGIQPDAPKRHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSV-FDPRE----V 82

Query: 364 DSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
            + +G   + +    + F P +  +  +M      E  +  + +RA+ P +       + 
Sbjct: 83  PNKTGYCVQGELFCEFKFAPFSHHKR-KMHQQDAEEKEYSLILQRALEPAVCLQEFPNFQ 141

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           + + + + ++ GS+  A +  +SLAL +AGVP+   V    +G+     D   L D +  
Sbjct: 142 VDVYATVLDNGGSALAAAIMAASLALANAGVPMFGLVTASTVGIY----DHTYLVDPTDT 197

Query: 483 EDHLGHM-DFKVAGTDSGITAMQMDMKIGGISE 514
           E+             + GI       + G ISE
Sbjct: 198 EETFCCTKSVPGTVHNHGIIIQAALPQHGQISE 230



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 16/163 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY--QERTYAVG 71
           R + L+TG I+ Q+ G+     G T ++ +V   R         P    Y  Q   +   
Sbjct: 47  RNIFLKTGIIS-QAKGSAYIEMGNTKIICSVFDPRE-------VPNKTGYCVQGELFCEF 98

Query: 72  KI-PGGYLRRESRPTE-NEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
           K  P  + +R+    +  E   S ++ R++ P     +    +  V   V+  D   S  
Sbjct: 99  KFAPFSHHKRKMHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVL--DNGGSAL 156

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
             +++AAS AL  +G+P  G V  + V   +  Y+++P   E+
Sbjct: 157 AAAIMAASLALANAGVPMFGLVTASTVGIYDHTYLVDPTDTEE 199


>gi|299538552|ref|ZP_07051835.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726139|gb|EFI66731.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 378

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G+V ++  FGAFV      +GLVHISQ++ + +    + +KEG  V VK+LD + D
Sbjct: 273 TILDGRVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQVKVLDVNAD 332

Query: 680 RGKIKLSMKVVDQNTGKPIV 699
            G++ LS+K + +N     V
Sbjct: 333 EGRLALSIKELLENPEAEEV 352



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   D G  ++  S  A +EA +   +       +   +  G+V ++  FGAF+   G 
Sbjct: 150 KIVELDKGKNRLILSHRAVVEAEKASQKKNVINQIKAGDVLDGKVQRLASFGAFIDL-GG 208

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
            DGLVHISQ+S E V+  S+V+ EG  V VK+L  D    +I LS+K         I
Sbjct: 209 IDGLVHISQVSHEHVSDVSEVLAEGQDVKVKVLSVDPENERISLSIKETIPGPWSNI 265



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E +           I KG   +V +    V   GA  DG+V IS+LS+  + K SDV+  
Sbjct: 3   EEMNYAEQTFNEGDIVKGIAAQVDEKAVSVSIPGAPFDGIVPISELSSLHIEKASDVISV 62

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVD 691
           GD + + +   ++   + LS + VD
Sbjct: 63  GDELELMITKVEEENFV-LSKRKVD 86


>gi|165933332|ref|YP_001650121.1| 30S ribosomal protein S1 [Rickettsia rickettsii str. Iowa]
 gi|165908419|gb|ABY72715.1| SSU ribosomal protein S1P [Rickettsia rickettsii str. Iowa]
          Length = 568

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V+     V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWEAI 283



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAIKEEFPVGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K + ++   K+GD V  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGTALLKSYKKGDEVECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K +  N  + I
Sbjct: 434 AINIEKEQVSLGIKQLSPNPYQEI 457


>gi|319652776|ref|ZP_08006884.1| hypothetical protein HMPREF1013_03499 [Bacillus sp. 2_A_57_CT2]
 gi|317395541|gb|EFV76271.1| hypothetical protein HMPREF1013_03499 [Bacillus sp. 2_A_57_CT2]
          Length = 150

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 4   EIGSKVQGKVTGITNFGAFVELPGGTTGLVHISEVADSYVKDVNEHLKVGDEVTVKVLS- 62

Query: 678 DDRGKIKLSM-KVVDQNTGK 696
           +  GKI LS+ K VD+  G+
Sbjct: 63  EKEGKIALSIKKAVDRPEGQ 82


>gi|291550487|emb|CBL26749.1| Transcriptional accessory protein [Ruminococcus torques L2-14]
          Length = 716

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   +G+G   +R IV++             K A     E+               + 
Sbjct: 596 KKLAEELGIGEITLRDIVKELE-----------KPARDPRDEMPKPILRTDVLEMKDLKE 644

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + KG V  V+DFG FV     +DGLVHISQ++ + +    + V  GD V VK++  D 
Sbjct: 645 GMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKYIKHPLEAVSVGDIVDVKVMSVDL 704

Query: 679 DRGKIKLSMKVV 690
            + +I+L+M+ +
Sbjct: 705 KKKRIQLTMRGI 716


>gi|225027513|ref|ZP_03716705.1| hypothetical protein EUBHAL_01769 [Eubacterium hallii DSM 3353]
 gi|224955152|gb|EEG36361.1| hypothetical protein EUBHAL_01769 [Eubacterium hallii DSM 3353]
          Length = 716

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 15/125 (12%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYK 624
           +G+G   +  I+E+             K      +E+     R  +  + D+ E   + K
Sbjct: 599 LGIGEMTLHDIIEELE-----------KPGRDPRSEMPKPVLRTDVLEMKDLKEG-MVLK 646

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHISQ++   +    +VV  GD + V+++  D ++ +I
Sbjct: 647 GTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIIDVQVMSVDLNKKRI 706

Query: 684 KLSMK 688
           +L+MK
Sbjct: 707 QLTMK 711


>gi|169334397|ref|ZP_02861590.1| hypothetical protein ANASTE_00797 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259114|gb|EDS73080.1| hypothetical protein ANASTE_00797 [Anaerofustis stercorihominis DSM
           17244]
          Length = 666

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 15/199 (7%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI--MAIPPDQIRNVIG- 568
           +S  I++    + ++ +   L E +    E   ++      +    M I  + +   I  
Sbjct: 445 VSRKILLEEAYKERKAKEKELKEAAIAALEIGKEVEAPIKNITNFGMFIDLNGVDGFIHI 504

Query: 569 -------MGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
                  +G       V  +   +  + D    K+  S        +E  +   +   V 
Sbjct: 505 SDIAWKRVGNINDLYKVGDSVKAIVTELDKDNYKVKLSVKDLT---KEPWQEFIENYSVG 561

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +  K  +    +FGAF       +GL+HISQLS +RV    D VK GD V VK++D + D
Sbjct: 562 QTVKATIKNTTNFGAFAEIIPDVEGLIHISQLSHDRVNNVEDAVKTGDEVNVKIIDINKD 621

Query: 680 RGKIKLSMKVVDQNTGKPI 698
           + K+ LS+K       + I
Sbjct: 622 KRKVSLSIKETMDPPKRKI 640



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 4/229 (1%)

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + ++ D++        +   V   + G T      KI       +  A ++         
Sbjct: 329 YDLMEDLTSKAAKGDKVKVMVMKMNDG-TGNVSLSKIKVDELGALDEAKEKFDSKETVKA 387

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR-GIVEQTGAKVNIDDDG 591
                V     + LG     +         I++   + GK I   IVE    K  I    
Sbjct: 388 KITKVVKGGLIVDLGFIKAFMPASYYDVRFIKDFDSLLGKEIECRIVEFDKQKNKIIVSR 447

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            + +  +        +E+  +     E+ K  +  +  + +FG F+      DG +HIS 
Sbjct: 448 KILLEEAYKERKAKEKELKEAAIAALEIGKEVEAPIKNITNFGMFIDL-NGVDGFIHISD 506

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
           ++ +RV   +D+ K GD+V   + + D    K+KLS+K + +   +  +
Sbjct: 507 IAWKRVGNINDLYKVGDSVKAIVTELDKDNYKVKLSVKDLTKEPWQEFI 555



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N IG+  G      ++E+    +N  D+  V     ++ E                 
Sbjct: 248 KKYNNIGLTAGASTPTQLIEEV---INTMDNNMVDSFEKNIEESIKEIRE---------- 294

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
             I +G++V V      ++     DG+V  +    + +   +    +GD V V ++   D
Sbjct: 295 GDIVEGEIVMVDHNEVTMNIGYKSDGIVKKADFLYDLMEDLTSKAAKGDKVKVMVMKMND 354

Query: 679 DRGKIKLSMKVVDQ 692
             G + LS   VD+
Sbjct: 355 GTGNVSLSKIKVDE 368


>gi|70726436|ref|YP_253350.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
 gi|84029458|sp|Q4L6I1|RS1_STAHJ RecName: Full=30S ribosomal protein S1
 gi|68447160|dbj|BAE04744.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
          Length = 392

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E         S+ +  
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQAENDVKKASLLESL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               + KG+V ++ +FGAFV   G  DGLVH+S+LS E V    DVV  G  V VK+   
Sbjct: 192 NAGDVIKGKVARLTNFGAFVDI-GGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSV 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           + D  +I LS+K       + I
Sbjct: 251 EKDAERISLSIKDTLPTPFESI 272



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              SI      + + +G+VV++ +FGAFV       GLVHIS+++ E +    + ++ G 
Sbjct: 268 PFESIKGQFHEDDVIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 328 QVNVKILGIDEENERISLSIKA 349



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------------VEQTGAKVNIDDDGT 592
           ++ +   +  ++ I   +   +I +       I            +E    K+ +D++  
Sbjct: 22  EVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVTKIEVDEEND 81

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
             +   S  ++E  +     + +  + ++I + +V +V+  G  V     + G V  S +
Sbjct: 82  SGVYILSKRQLETEKS-YEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--GQRGFVPASLI 138

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           ST+ +   S  V +G T+ +K+ + D +  ++ LS K V+Q
Sbjct: 139 STDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQ 177



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK+
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQ 63

Query: 667 GDTVWVKL--LDFDDRG 681
           GD +   +  ++ D+  
Sbjct: 64  GDEIEAYVTKIEVDEEN 80


>gi|332710577|ref|ZP_08430522.1| transcriptional accessory protein [Lyngbya majuscula 3L]
 gi|332350632|gb|EGJ30227.1| transcriptional accessory protein [Lyngbya majuscula 3L]
          Length = 720

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
            +G V  V++FGAFV     +DGLVHISQL+   V     +VK G  V V++++ +++  
Sbjct: 649 LEGIVTNVVNFGAFVDIGVHQDGLVHISQLADRFVEDPKQIVKVGQVVKVRVMEVNEKLK 708

Query: 682 KIKLSMK 688
           ++ LSM+
Sbjct: 709 RVSLSMR 715


>gi|325831217|ref|ZP_08164509.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
 gi|325486818|gb|EGC89265.1| Tex-like protein N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 717

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D +   +G+G   +R IV +      ++  G      +              +T   E
Sbjct: 593 DVDALAAELGVGAPTLRDIVSE------LEKPGRDPRDDAPEVVFSEGVRDFDDLTVGME 646

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +     G V  V+DFGAFV     +DGLVH+S+++   V   S+VV  GDTV V +   D
Sbjct: 647 L----TGTVRNVVDFGAFVDVGVKQDGLVHVSKMADRFVRHPSEVVAVGDTVTVWVTGID 702

Query: 679 -DRGKIKLSM 687
            DRGKI LSM
Sbjct: 703 KDRGKISLSM 712


>gi|149916116|ref|ZP_01904638.1| 30S ribosomal protein S1 [Roseobacter sp. AzwK-3b]
 gi|149809971|gb|EDM69820.1| 30S ribosomal protein S1 [Roseobacter sp. AzwK-3b]
          Length = 562

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I+ + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVISQLTEGDTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPW 272



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDLVAAKYPLASVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVEVMVLEIDQAKRRVSLGLKQTQRNPWE 360



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 24/254 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I ++   +K+  I    +     
Sbjct: 202 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIK---INKETH 258

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +  +   +++         T RV  +      +   +  G + +  + E + 
Sbjct: 259 RISLGMKQLQEDPWDLVAAKYPLASVHTGRVTNITDYGAFVE--LEPGVEGLVHVSEMSW 316

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      +                  R       +   V    +G+V
Sbjct: 317 TKKNVHPGKIVSTSQEVEVMVLEIDQAKRRVSLGLKQTQRNPWEVFAETHPVGTEVEGEV 376

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + +FG F+   G  DG+VH+S LS  ER  +     K+GD V   + + D ++ +I L
Sbjct: 377 KNITEFGLFIGLPGDIDGMVHLSDLSWDERGEEAIQNYKKGDIVKAVVSEVDVEKERISL 436

Query: 686 SMKVVDQNTGKPIV 699
           S+K +D +     V
Sbjct: 437 SIKALDGDPFADAV 450



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V  + D G  V + G +   +  S LS +R  +  +    GD V V++ +
Sbjct: 453 VKRGSIITVEVTSIEDGGIEVQYDGLK-SFIRRSDLSRDRSEQRPERFTVGDKVDVRVTN 511

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 512 VDSKTRRLGLSIKAREIAEEKEAV 535


>gi|169827482|ref|YP_001697640.1| 30S ribosomal protein S1-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168991970|gb|ACA39510.1| 30S ribosomal protein S1-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 378

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G+V ++  FGAFV      +GLVHISQ++ + +    + +KEG  V VK+LD + +
Sbjct: 273 TILEGKVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQDVQVKVLDVNAE 332

Query: 680 RGKIKLSMKVVDQNTGKPIV 699
            G++ LS+K + +N     V
Sbjct: 333 DGRLALSIKELLENPEAEEV 352



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   D    ++  S  A +E+ +   +       +   +  G+V ++  FGAF+   G 
Sbjct: 150 KIVELDKEKNRLILSHRAVVESEKASQKKDVINQIKAGDVLDGKVQRLASFGAFIDL-GG 208

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
            DGLVHISQ+S E V+  S+V+ EG  V VK+L  D    +I LS+K         I
Sbjct: 209 IDGLVHISQVSHEHVSDVSEVLSEGQGVTVKVLSVDPENERISLSIKETIPGPWSNI 265



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E +           I KG   +V +    V   GA  DG++ IS+LS+  + K SDV+  
Sbjct: 3   EEMNYAEQTFNEGDIVKGIAEQVDEKAVSVSIPGAPFDGIIPISELSSLHIEKASDVISV 62

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVD 691
           GD + + +   ++   + LS + VD
Sbjct: 63  GDELELMITKVEEENFV-LSKRKVD 86


>gi|150402305|ref|YP_001329599.1| RNA-binding S1 domain-containing protein [Methanococcus maripaludis
           C7]
 gi|150033335|gb|ABR65448.1| RNA binding S1 domain protein [Methanococcus maripaludis C7]
          Length = 713

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            +  +++   +  G   +  I+++      +  +D    +  S + E+E  +E       
Sbjct: 588 KVDIEKLAEKLNCGVPTLEDIIKELEKPGRDPREDLPKPVLRSDVLELEDLKE------- 640

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 I KG V  ++DFGAF+      DGL HIS++S   +    DV+  GD V V ++
Sbjct: 641 ----GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEISDRFIKHPLDVISVGDIVDVMVM 696

Query: 676 DFD-DRGKIKLSMK 688
           D D D+ ++ LS+K
Sbjct: 697 DIDFDKKRVSLSIK 710


>gi|330980287|gb|EGH78422.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 387

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 3/98 (3%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E + E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S
Sbjct: 1   EAENSAEREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPS 58

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           ++V  GD + VK+L +D +R ++ L +K + ++    I
Sbjct: 59  EIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 96



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    ++     VN+ D+  VK+          +        +   +I      +    
Sbjct: 48  DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVT 107

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +R +
Sbjct: 108 ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRR 167

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 168 ISLGIKQCKSNPWED 182



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+K
Sbjct: 263 ASDPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLK 322

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           EG+ +  K++  D + + I LS+K  D    K  +
Sbjct: 323 EGEEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 357



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 142 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 187

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 188 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 246

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K +  + 
Sbjct: 247 SVDPERERISLGIKQLASDP 266


>gi|229118373|ref|ZP_04247727.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
 gi|228664943|gb|EEL20431.1| RNA binding S1 domain protein [Bacillus cereus Rock1-3]
          Length = 119

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 15  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 74

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 75  RKMSLSLKAAKRKQGRILI 93


>gi|91788399|ref|YP_549351.1| RNA-binding S1 [Polaromonas sp. JS666]
 gi|91697624|gb|ABE44453.1| RNA binding S1 [Polaromonas sp. JS666]
          Length = 803

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDD 589
           ++ ++     +   +L      ++ +   P+   N    G   +R I+ +      +   
Sbjct: 600 VVEKIMAHTGKPVAELMGRAEMLKTLK--PELFANE-KFGVITVRDIIAELEKPGRDPRP 656

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D  V   +  + +I   +E               +G V  V  FGAFV     +DGLVH+
Sbjct: 657 DFKVARFNEGVEDIRDLKE-----------GMTLEGTVSNVAAFGAFVDIGVHQDGLVHV 705

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           SQL+ + V    +VVK GD V V++ + D  R +I L+MK+ D    + 
Sbjct: 706 SQLANKFVNDAREVVKTGDIVKVRVTEVDVARKRIGLTMKLGDAPPRRD 754


>gi|34581621|ref|ZP_00143101.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
 gi|28263006|gb|EAA26510.1| 30S ribosomal protein S1 [Rickettsia sibirica 246]
          Length = 568

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V+     V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWEAI 283



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAIKEEFPVGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNPNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVDFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K +D++   K+GD +  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K +  N  + I
Sbjct: 434 AINIEKEQVSLGIKQLSPNPYQEI 457


>gi|260589442|ref|ZP_05855355.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
 gi|260540187|gb|EEX20756.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
          Length = 250

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +    +      + +   +   +      +  F P  ++     +   + +      
Sbjct: 50  WDKLEQMKEDKTEFEVSVEGIVKGGVIAYVEGIRAFIPVSKLALNYVENPEDFLKKTI-- 107

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                  T     +D+     + S+     E A    RS  D  +V  I +G V  +  +
Sbjct: 108 -------TVRVFEVDEQENRLVLSAKEILKEKADAEKRSKIDDIKVGSIVEGTVESLQTY 160

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           GAF+       GLVH+SQ+S +R+     V+  GDTV  K++  ++ GKI LSMK ++
Sbjct: 161 GAFIDLGDGISGLVHVSQISEKRIKSPKAVLSIGDTVKAKVIK-NEDGKISLSMKALN 217


>gi|153008797|ref|YP_001370012.1| RNA-binding S1 domain-containing protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560685|gb|ABS14183.1| RNA binding S1 domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 769

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + 
Sbjct: 650 KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEV 709

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I L+M+        P
Sbjct: 710 DVPRKRIGLTMRKDGGEAPAP 730


>gi|119962080|ref|YP_946901.1| transcriptional accessory protein [Arthrobacter aurescens TC1]
 gi|119948939|gb|ABM07850.1| putative transcriptional accessory protein [Arthrobacter aurescens
           TC1]
          Length = 818

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V  FGAFV     +DGLVH+S LS + V+   ++VK G  V VK+L+ 
Sbjct: 657 KPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSGQVVRVKVLEA 716

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R +I L++++ D+ 
Sbjct: 717 DPERKRISLTLRLDDEP 733


>gi|70725969|ref|YP_252883.1| hypothetical protein SH0968 [Staphylococcus haemolyticus JCSC1435]
 gi|68446693|dbj|BAE04277.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 715

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I  +QI   + +G   +  I++       +  D+    I  S +  IE  +E ++     
Sbjct: 590 INTNQIAEQLNVGVPTLEDIIKSLMAPNRDPRDEFETPILKSDVLSIEDLKEGMK----- 644

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                   G V  V+DFGAFV     +DGLVH+S+LS + V    DVV  GD V V +LD
Sbjct: 645 ------LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDVVSVGDIVEVWILD 698

Query: 677 FD-DRGKIKLSM 687
            D ++GK+ L+M
Sbjct: 699 IDKNKGKVSLTM 710


>gi|229083380|ref|ZP_04215730.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
 gi|228699916|gb|EEL52551.1| RNA binding S1 domain protein [Bacillus cereus Rock3-44]
          Length = 166

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINEHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|229586799|ref|YP_002845300.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
 gi|228021849|gb|ACP53557.1| 30S ribosomal protein S1 [Rickettsia africae ESF-5]
          Length = 568

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V+     V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWEAI 283



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAIKEEFPVGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVDFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K +D++   K+GD +  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K +  N  + I
Sbjct: 434 AINIEKEQVSLGIKQLSPNPYQEI 457


>gi|326434949|gb|EGD80519.1| zinc finger protein [Salpingoeca sp. ATCC 50818]
          Length = 266

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +P + KIY+  V  + ++GAFV   G  +  L+HISQ+S  R+   ++VV  GD ++ K
Sbjct: 13  RMPALYKIYRVAVTSIKEYGAFVEMEGFNKKALLHISQMSQSRINDPTEVVSVGDPLFAK 72

Query: 674 LLDFDDRGKIKLSMKVVDQNTGKP 697
           +++  + GKI +S+K V Q+ G  
Sbjct: 73  VIEIKEDGKISVSIKTVRQSDGTD 96


>gi|300743754|ref|ZP_07072774.1| putative transcriptional accessory protein [Rothia dentocariosa
           M567]
 gi|300380115|gb|EFJ76678.1| putative transcriptional accessory protein [Rothia dentocariosa
           M567]
          Length = 811

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +     +     V   I E T    +I ++              A      S  +   V 
Sbjct: 665 EDPLTALDPADYVNGSIGEYTVR--DIFEELRHPGRDPRPEFRTAHFSEDISRFEDVTVG 722

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGL+HISQ+S E VA   D+V+ GD V V++++ D  
Sbjct: 723 MVLEGTVSNVAAFGAFVDIGVHQDGLIHISQMSREYVANPHDIVRSGDIVTVRVVEVDAS 782

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I LS+ V     G+
Sbjct: 783 RRRISLSLLVDAGEPGR 799


>gi|302381901|ref|YP_003817724.1| ribosomal protein S1 [Brevundimonas subvibrioides ATCC 15264]
 gi|302192529|gb|ADL00101.1| ribosomal protein S1 [Brevundimonas subvibrioides ATCC 15264]
          Length = 567

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAILEEARAEQRTELVGQLQEG-EVRDGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV+  S V+  GDTV V+++  + D  +I L MK +  +  
Sbjct: 229 DMSWKRVSHPSQVLAVGDTVQVQIVKINPDTQRISLGMKQLQSDPW 274



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A      +      +    +G+V    +FG F+      DG+VH+S L    V+    +
Sbjct: 355 QAQDNPWDAFVAANPIGSTVEGEVKNATEFGLFIGLDNDIDGMVHLSDLDWS-VSGEEAI 413

Query: 664 --VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              ++G+ V  K+LD D ++ ++ L +K +  + 
Sbjct: 414 QRYRKGEMVKAKVLDVDVEKERVSLGIKQLGGDP 447



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           Y G++  + D+GAFV      +GLVH+S++S  ++      +V     V V +LD D  +
Sbjct: 287 YTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVVVLDVDASK 346

Query: 681 GKIKLSMKVVDQNTG 695
            +I L +K    N  
Sbjct: 347 RRISLGLKQAQDNPW 361



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGA---RDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  +     V  +   G  V F          V  S +S ++  +  +    GD V  ++
Sbjct: 455 KKGQTVTVTVTSIESGGIEVKFGEDDAPITSFVRKSDISRDKNEQRPERYAVGDRVDAQI 514

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKPIV 699
              D    +I +S+K ++    K  +
Sbjct: 515 TSIDKATRRISVSIKALEMADEKEAI 540


>gi|225568606|ref|ZP_03777631.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
           15053]
 gi|225162534|gb|EEG75153.1| hypothetical protein CLOHYLEM_04683 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D      + S+     E  R+   +     ++  + KG V  + ++GAFV       
Sbjct: 92  IDVDQANNRLVLSAREILKEKERKEKEAKIASVKIGSVVKGTVESLQNYGAFVRLEDGLS 151

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVH+SQ+S +RV    DV+  GD V VK++   D GKI LSMK +
Sbjct: 152 GLVHVSQISQKRVKAPKDVLNTGDEVTVKIIGLKD-GKISLSMKAL 196


>gi|62185082|ref|YP_219867.1| 30S ribosomal protein S1 [Chlamydophila abortus S26/3]
 gi|62148149|emb|CAH63906.1| 30s ribosomal protein S1 [Chlamydophila abortus S26/3]
          Length = 581

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+NID    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINIDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 183 KILKINIDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGI 242

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 243 DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHN-----PWED 297

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K   G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V 
Sbjct: 298 IEKKYPPGKRITGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVE 357

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
             +L    D GKI L +K  + N    I
Sbjct: 358 AIVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I ++     +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD
Sbjct: 468 PWNEIEEMFPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGD 527

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
           +V  K++  D D  K+ LS+K 
Sbjct: 528 SVSAKVIKLDPDHKKVSLSVKE 549



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 102/249 (40%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +          ++ +  P    + I  + I  +I +        V
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRITGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNV 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+    + S    E + +  + ++  +  +  +         + ++  + 
Sbjct: 344 VDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVRAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G  V   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LSSNPWNEI 472



 Score = 39.1 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    +    E + I KGQ+++ +  G  V      +  +
Sbjct: 106 DEEGKVVLS---REKATRQRQWEHILAHCEEGS-IVKGQIIRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + DR  + +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINIDRRNVVVSRRELLE 203


>gi|315644380|ref|ZP_07897520.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
 gi|315280257|gb|EFU43549.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
          Length = 163

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63

Query: 678 DDRGKIKLSMK-VVDQNT 694
           D  GKI LS+K  VD+  
Sbjct: 64  DKDGKIGLSIKQAVDKPA 81


>gi|313847991|emb|CBY16988.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|328914660|gb|AEB55493.1| ribosomal protein S1 [Chlamydophila psittaci 6BC]
          Length = 581

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+NID    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINIDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 183 KILKINIDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGI 242

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 243 DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHN-----PWED 297

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K   G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V 
Sbjct: 298 IEKKYPPGKRITGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVE 357

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
             +L    D GKI L +K  + N    I
Sbjct: 358 AIVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I ++     +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD
Sbjct: 468 PWNEIEEMFPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGD 527

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
           +V  K++  D D  K+ LS+K 
Sbjct: 528 SVSAKVIKLDPDHKKVSLSVKE 549



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 102/249 (40%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +          ++ +  P    + I  + I  +I +        V
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRITGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNV 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+    + S    E + +  + ++  +  +  +         + ++  + 
Sbjct: 344 VDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVRAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G  V   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LSSNPWNEI 472



 Score = 39.1 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    +    E + I KGQ+++ +  G  V      +  +
Sbjct: 106 DEEGKVVLS---REKATRQRQWEHILAHCEEGS-IVKGQIIRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + DR  + +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINIDRRNVVVSRRELLE 203


>gi|307944634|ref|ZP_07659974.1| protein YhgF [Roseibium sp. TrichSKD4]
 gi|307772383|gb|EFO31604.1| protein YhgF [Roseibium sp. TrichSKD4]
          Length = 810

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              AA +         +     +G V  V +FGAFV     +DG
Sbjct: 638 DILSELEKPGRDPRPEFKTAALQDGVEEISDLKQGMKLEGTVTNVTNFGAFVDVGVHQDG 697

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK-VVDQNTGKP 697
           LVH+SQL+   V     VVK GD V V +LD D  R +I +SMK  VD  + K 
Sbjct: 698 LVHVSQLADRFVDDPHTVVKAGDIVKVTILDVDVPRKRISMSMKSQVDYQSEKE 751


>gi|261403925|ref|YP_003240166.1| RNA-binding S1 domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329925485|ref|ZP_08280359.1| S1 RNA binding domain protein [Paenibacillus sp. HGF5]
 gi|261280388|gb|ACX62359.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
 gi|328939768|gb|EGG36108.1| S1 RNA binding domain protein [Paenibacillus sp. HGF5]
          Length = 162

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVTVKVINV 63

Query: 678 DDRGKIKLSMK-VVDQNT 694
           D  GKI LS+K  VD+  
Sbjct: 64  DKDGKIGLSIKQAVDKPA 81


>gi|15892670|ref|NP_360384.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
 gi|81528161|sp|Q92HM4|RS1_RICCN RecName: Full=30S ribosomal protein S1
 gi|15619842|gb|AAL03285.1| 30S ribosomal protein S1 [Rickettsia conorii str. Malish 7]
          Length = 568

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V+     V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + I
Sbjct: 259 IKFDEKNKRISLGIKQLDSNPWEAI 283



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAIKEEFPVGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K +D++   K+GD +  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K +  N  + I
Sbjct: 434 AINIEKEQVSLGIKQLSPNPYQEI 457


>gi|46200126|ref|YP_005793.1| 30S ribosomal protein S1 [Thermus thermophilus HB27]
 gi|46197754|gb|AAS82166.1| SSU ribosomal protein S1P [Thermus thermophilus HB27]
          Length = 536

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + +T+      + KG+V  V DFG FV      +GLVH+S+L  +RV   + + K+G
Sbjct: 369 DPWQQLTEKYPPGTVLKGKVTGVTDFGVFVEIEPGIEGLVHVSELDHKRVENPAALFKKG 428

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           D + V +L+ D    ++ LS K +    
Sbjct: 429 DEMEVVVLNIDPVEQRVSLSRKRLLPPP 456



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ +   V    +G+VV +  FGAFV      +GL+HIS+LS  +R    S+VVKE
Sbjct: 282 DPWTTVAEKYPVGTRVRGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKE 341

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  ++ L +K    +  + +
Sbjct: 342 GDEVEAVVLRLDPEERRLSLGLKQTQPDPWQQL 374



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           +G +V+  I+E    K      G V ++  ++ E E  ++   +     E  ++ +G VV
Sbjct: 165 VGQQVLAKIIEFHRRK------GRVILSRRAVLE-EEQKKAREAFLKSLEPGQVVEGTVV 217

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +V DFG FV+     DGLVH S+++  R     +V+++G  V  ++L  D ++ ++ LS+
Sbjct: 218 EVTDFGVFVNLGP-VDGLVHRSEITWGRFNHPREVIQKGQKVKAQVLSVDPEKERVNLSI 276

Query: 688 KVVDQNTG 695
           K +  +  
Sbjct: 277 KALIPDPW 284



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 602 EIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--A 658
            +EAA +   +         +I  G+VV V   G  V      +G++  +QL+T+ +   
Sbjct: 14  SMEAALQETEARLEKRVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPFNQLTTKPLSEE 73

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +  +++  GD V V++L  D + G+I LS K ++
Sbjct: 74  ELRNLLSPGDEVKVQVLRVDPETGQILLSRKKIE 107



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E    I ++ E  +     + + +  G          G +  SQL   RV    + V
Sbjct: 107 EAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAEL-DGIQGFMPASQLDLRRVPNLDEFV 165

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             G  V  K+++F  R G++ LS + V +   K
Sbjct: 166 --GQQVLAKIIEFHRRKGRVILSRRAVLEEEQK 196


>gi|55980131|ref|YP_143428.1| 30S ribosomal protein S1 [Thermus thermophilus HB8]
 gi|55771544|dbj|BAD69985.1| 30S ribosomal protein S1 [Thermus thermophilus HB8]
          Length = 536

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + +T+      + KG+V  V DFG FV      +GLVH+S+L  +RV   + + K+G
Sbjct: 369 DPWQQLTEKYPPGTVLKGKVTGVTDFGVFVEIEPGIEGLVHVSELDHKRVENPAALFKKG 428

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           D + V +L+ D    ++ LS K +    
Sbjct: 429 DEMEVVVLNIDPVEQRVSLSRKRLLPPP 456



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ +   V    +G+VV +  FGAFV      +GL+HIS+LS  +R    S+VVKE
Sbjct: 282 DPWTTVAEKYPVGTRVRGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKE 341

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  ++ L +K    +  + +
Sbjct: 342 GDEVEAVVLRLDPEERRLSLGLKQTQPDPWQQL 374



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           +G +V+  I+E    K      G V ++  ++ E E  ++   +     E  ++ +G VV
Sbjct: 165 VGQQVLAKIIEFHRRK------GRVILSRRAVLE-EEQKKAREAFLKSLEPGQVVEGTVV 217

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +V DFG FV+     DGLVH S+++  R     +V+++G  V  ++L  D ++ ++ LS+
Sbjct: 218 EVTDFGVFVNLGP-VDGLVHRSEITWGRFNHPREVIQKGQKVKAQVLSVDPEKERVNLSI 276

Query: 688 KVVDQNTG 695
           K +  +  
Sbjct: 277 KALIPDPW 284



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 602 EIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--A 658
            +EAA +   +         +I  G+VV V   G  V      +G++  +QL+T+ +   
Sbjct: 14  SMEAALQETEARLEKRVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPFNQLTTKPLSEE 73

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +  +++  GD V V++L  D + G+I LS K ++
Sbjct: 74  ELRNLLSPGDEVKVQVLRVDPETGQILLSRKKIE 107



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E    I ++ E  +     + + +  G          G +  SQL   RV    + V
Sbjct: 107 EAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAEL-DGVQGFMPASQLDLRRVPNLDEFV 165

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             G  V  K+++F  R G++ LS + V +   K
Sbjct: 166 --GQQVLAKIIEFHRRKGRVILSRRAVLEEEQK 196


>gi|325103294|ref|YP_004272948.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145]
 gi|324972142|gb|ADY51126.1| RNA binding S1 domain protein [Pedobacter saltans DSM 12145]
          Length = 1008

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    + +     GK +   +     K++  +  TV      +  +         I+  
Sbjct: 608 QIDVKPVIDYDSYIGKTLDFKI----VKISEANQNTVVSRRLIIESVIE--MQREEISKK 661

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G +  +  FGAF+   G  DGL++I+ +S  R+   SD+++    + V +LD
Sbjct: 662 LEKGQILEGTIKNITYFGAFIDL-GGIDGLLYITDISWGRINHPSDLLELNQKIHVVVLD 720

Query: 677 F-DDRGKIKLSMKVVDQNTG 695
           + D++ +I L +K +  N  
Sbjct: 721 YEDNKKRISLGLKQLHPNPW 740



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 93/252 (36%), Gaps = 26/252 (10%)

Query: 464 MGLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
            G++K      ++ DI G E  L    +D K            +D KI  IS      A 
Sbjct: 582 SGVIKSTSKGGLIVDIFGVEAFLPGSQIDVKPVIDYDSYIGKTLDFKIVKIS-----EAN 636

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQ 580
           Q     R  I+  + ++  E   +  E    +E            I +GG   +  I + 
Sbjct: 637 QNTVVSRRLIIESVIEMQREEISKKLEKGQILEGTIKNITYFGAFIDLGGIDGLLYITDI 696

Query: 581 TGAKVN-----IDDDGTVKIASSSLAEIEAAR---------EMIRSITDVPEVNKIYKGQ 626
           +  ++N     ++ +  + +      + +                ++    ++     G+
Sbjct: 697 SWGRINHPSDLLELNQKIHVVVLDYEDNKKRISLGLKQLHPNPWDALDAKIKIGTRVTGK 756

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLL--DFDDRGKI 683
           VV V D+G F+      +GLVHIS +S         ++ K GD +   ++    ++R K+
Sbjct: 757 VVSVEDYGIFLEIEPGVEGLVHISDISWSSTTVNCKELFKLGDFLEAIVITVGIEER-KM 815

Query: 684 KLSMKVVDQNTG 695
            L +K +  ++ 
Sbjct: 816 SLGLKQLISDSW 827



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQ-LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
            +V+ ++D+G FV       GLVHIS+ LS  R+   ++  K G+ + + +L+ D + + 
Sbjct: 842 AKVLNLVDYGIFVELEEDVIGLVHISKILSYRRINHPAEFTKIGEKINISILEIDKKNR- 900

Query: 684 KLSM 687
           +LS+
Sbjct: 901 RLSL 904


>gi|311104858|ref|YP_003977711.1| protein tex [Achromobacter xylosoxidans A8]
 gi|310759547|gb|ADP14996.1| protein tex [Achromobacter xylosoxidans A8]
          Length = 791

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVLEVDAA 730

Query: 680 RGKIKLSMKVVD 691
           R ++ L+M++ D
Sbjct: 731 RKRVALTMRLND 742


>gi|210615657|ref|ZP_03290703.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787]
 gi|210150200|gb|EEA81209.1| hypothetical protein CLONEX_02921 [Clostridium nexile DSM 1787]
          Length = 361

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   LS    +   F P      +     +++    G+ I
Sbjct: 98  ERLKEAFENKEVLKATVAQILGGGLSVVVDEARVFIPASL---VSDTYEKDLSKYQGQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E+ + +    +V  + +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAEKAELQKELFAKLKVGDVVEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V + GDTV V + D +D  K+ LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVENPKKVFQVGDTVKVLVKDINDT-KVALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      V K   G+V ++ DFGAFV      D L+H+SQ+S   V K SD +  G 
Sbjct: 266 PWANAATDFAVGKEVTGKVARMTDFGAFVELAPGVDALLHVSQISRAHVEKPSDALSVGQ 325

Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690
            +  K++D ++   KI LSMK +
Sbjct: 326 EITAKVVDLNEAEKKISLSMKAL 348



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  S+ + E     + +V  G
Sbjct: 8   QMLEESFKTIRNGEVVDGTVIDVKPDEIILNIGYKADGIITRSEYTNEPNVDLTTIVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +    G
Sbjct: 68  DTMTAKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|110802114|ref|YP_699426.1| 30S ribosomal protein S1 [Clostridium perfringens SM101]
 gi|110682615|gb|ABG85985.1| ribosomal protein, S1 family [Clostridium perfringens SM101]
          Length = 378

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +  A ++ K  ++ +   +   +      L  F P  +      + +  ++G   +V
Sbjct: 98  WDDLKEAFEKEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGRRIENLEELVGKTLEV 157

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                      +  + +    + S  + + E      +++    +  +  KG+V ++  F
Sbjct: 158 ---------RVIEFNKENRKVVVSRRIIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKF 208

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +I LS+K V +
Sbjct: 209 GAFVDI-GGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIK 267

Query: 693 NTGKPI 698
           N  + +
Sbjct: 268 NPWETL 273



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 21/197 (10%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE- 579
           ++  K  R  +++           +       ++       ++  +   G  V  G VE 
Sbjct: 160 IEFNKENRKVVVSRRIIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKFGAFVDIGGVEG 219

Query: 580 -------------QTGAKVNIDDDGTVKIASSSLAEIEAA------REMIRSITDVPEVN 620
                        +    V++ D+  V ++   +     A       +      +  +V 
Sbjct: 220 LVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIKNPWETLEGLKVG 279

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ DD 
Sbjct: 280 DVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNIDDE 339

Query: 680 RGKIKLSMKVVDQNTGK 696
             K+ LS+K   + + +
Sbjct: 340 NKKMSLSIKDAVETSNE 356


>gi|332665281|ref|YP_004448069.1| RNA binding S1 domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334095|gb|AEE51196.1| RNA binding S1 domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 778

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I +     GK +   V     K+N      V    + +    A  E   +I   
Sbjct: 301 QIDIKPIIDYDSYVGKNMEFKV----VKINETIKNAVVSHKALIESDLA--EQREAIIAS 354

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R++  S+V+     + V +LD
Sbjct: 355 LEKGQVLEGIVKNITDFGAFLDL-GGVDGLLYITDISWGRISHPSEVLSLNQKISVVVLD 413

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+ + +I L +K +  +  +
Sbjct: 414 FDENKKRISLGLKQLQPHPWE 434



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++  AKV   D    K++ S       A++    I +   +N  + G+V  +  +G F+ 
Sbjct: 492 QEYSAKVVTVDRDERKMSLSLKQM---AQDPWSEIENQFPLNSRHTGEVKNLTPYGVFIE 548

Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                 G+VHIS LS  +R    S+  K G+ + V +LD D D  K+ L  K +++N  
Sbjct: 549 LEEGIGGMVHISDLSWTKRYGHPSEFTKVGEKIDVAILDIDKDNRKLSLGHKQLEENPW 607



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
                + +    N I KG++V + D+GAF+      +GL+H+S++S   +     +  K 
Sbjct: 431 HPWEVLDNTISENSIVKGKIVNIEDYGAFLEIQPGVEGLIHVSEVSWSNQPINAREFFKL 490

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G     K++  D D  K+ LS+K + Q+    I
Sbjct: 491 GQEYSAKVVTVDRDERKMSLSLKQMAQDPWSEI 523


>gi|300778889|ref|ZP_07088747.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
 gi|300504399|gb|EFK35539.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
          Length = 596

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I++     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 166 QIDVKPIKDYDQFVGKTMEFKV----VKINPEFKNVVVSHKALIEADIEGQK--KEIIAQ 219

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV   S+++++G TV V +LD
Sbjct: 220 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWSRVNHPSEILEDGQTVKVVILD 278

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I+L MK ++ +  
Sbjct: 279 FDDEKTRIQLGMKQLEAHPW 298



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 24/256 (9%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G VK      ++ D+ G E  L    +D K            M+ K+  I+      
Sbjct: 138 IVNGFVKSRTKGGMIVDVHGIEAFLPGSQIDVKPIKDYDQFVGKTMEFKVVKINPE---- 193

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIV 578
                   +  I  ++     E   QL +    +E            I +GG   +  I 
Sbjct: 194 FKNVVVSHKALIEADIEGQKKEIIAQLEK-GQVLEGTVKNITSYGVFIDLGGVDGLIHIT 252

Query: 579 EQTGAKVN----IDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYK 624
           + + ++VN    I +DG          + E  R              +++   +V    K
Sbjct: 253 DLSWSRVNHPSEILEDGQTVKVVILDFDDEKTRIQLGMKQLEAHPWDALSADLKVGDKVK 312

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GL+H+S++S    +    D VK GD V  ++L  D +  K
Sbjct: 313 GKVVVLADYGAFVEIAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREERK 372

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K + ++  + I
Sbjct: 373 ISLGIKQLSKDPWENI 388



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I     V   + G V    +FG FV      DGL++IS LS  +++   S+   
Sbjct: 382 KDPWENIEAKYPVGSQHVGTVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCA 441

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD + V +L+ D    ++ L  K + +N  
Sbjct: 442 VGDKLDVVVLELDIQARRLSLGHKQLTENPW 472



 Score = 41.4 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+     +  + N +  G+VV++ D  A V      +G++ +++    +       +K G
Sbjct: 43  EIYNGSLNNLDDNDVLIGKVVRLTDKEAIVDINFKSEGVISLNEFRYNQG------LKVG 96

Query: 668 DTVWVKLLDF-DDRGKIKLSMK 688
           D V V +    D  G+++LS +
Sbjct: 97  DEVEVMVDKREDKTGQLQLSHR 118


>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
 gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
          Length = 240

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 86/229 (37%), Gaps = 15/229 (6%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +  + G + +  GS+     +T+ I  V  G RE  +  +      +        F   +
Sbjct: 14  LVCRTGAVSQAVGSAYIELRNTKIICAV-YGPREVAKKQEF---NIQATVACELKFATFS 69

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
                R      +E  + ++  +A+ PV+         + I   + ++DGS     +  +
Sbjct: 70  C-RRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGGAITAA 128

Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
           S+AL D+G+ I      I   L + GD  +I      +E  L + +     T++ +T   
Sbjct: 129 SVALADSGIEIFD--VAIGCCLRQIGDLSLIDPTYLEEEGRLNNEEEDEIVTNANVTIAL 186

Query: 505 MD--------MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           +         +  G +  +     ++    G + I   + + L++S  +
Sbjct: 187 LPSLNQVSALIMNGELDVDSTQRIIKDCLEGCIRIYPVVRECLTKSLEE 235



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 20  TGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGKIPGGYL 78
           TG ++ Q+ G+       T ++  V   R +   Q+F    TV  + +            
Sbjct: 18  TGAVS-QAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVACELKFA----TFSCRR 72

Query: 79  RRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           RR       E   S++I ++++P+    K  K++  + I V+Q+D        ++ AAS 
Sbjct: 73  RRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGG--AITAASV 130

Query: 137 ALMLSGLP-FEGPVVGAQVDYINGQYVLNPRLDEDQGSLD 175
           AL  SG+  F+  +    +  I    +++P   E++G L+
Sbjct: 131 ALADSGIEIFDVAIGCC-LRQIGDLSLIDPTYLEEEGRLN 169


>gi|254473883|ref|ZP_05087277.1| transcription accessory protein [Pseudovibrio sp. JE062]
 gi|211956993|gb|EEA92199.1| transcription accessory protein [Pseudovibrio sp. JE062]
          Length = 818

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 18/143 (12%)

Query: 564 RNVIGMGGKVIRGIV-----EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------- 611
           + +I   G+ IR I+          K   D+   +       +E+E      R       
Sbjct: 599 QKIIKACGRDIREIMGSNLLSNLDPKEFTDEKFGLPTVKDIFSELEKPGRDPRPEFKTAS 658

Query: 612 -----SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                      +   + +G V  V +FGAFV     +DGLVH+SQL+   V     VVK 
Sbjct: 659 FQDGVETMQDLKPGMMLEGTVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVDDPHTVVKA 718

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V V++++ D  R +I L+M+
Sbjct: 719 GDIVKVRVVEVDIARKRIGLTMR 741


>gi|322381181|ref|ZP_08055184.1| hypothetical protein PL1_0093 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154757|gb|EFX47028.1| hypothetical protein PL1_0093 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 159

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   ++ +K  D V VK+++ 
Sbjct: 4   EVGSKLEGKVTGITHFGAFVELEEGVTGLVHISEIADNYVKDVNEHLKIDDKVLVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           D  GKI LS+K   +   +
Sbjct: 64  DKDGKIGLSIKQTKEKPPE 82


>gi|285018413|ref|YP_003376124.1| transcription-related protein [Xanthomonas albilineans GPE PC73]
 gi|283473631|emb|CBA16134.1| putative transcription-related protein [Xanthomonas albilineans]
          Length = 786

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 594 KIASSSLAEIEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K       E +AAR           +   + +G V  V  FGAFV     +DGLVHIS L
Sbjct: 628 KPGRDPRPEFKAARFADGVEDIKDLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISAL 687

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           S   V    +VVK GD V VK+L+ D  R +I L+ ++ D
Sbjct: 688 SDSYVKDPREVVKAGDIVKVKVLEVDVARKRIALTRRLDD 727


>gi|170694794|ref|ZP_02885945.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
 gi|170140425|gb|EDT08602.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
          Length = 783

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAF+     +DGLVH+S +ST+ +    +VVK G  V VK+L+ D  
Sbjct: 657 MVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRIALTMRLDDE 729


>gi|166712336|ref|ZP_02243543.1| transcription-related protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 786

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 63/148 (42%), Gaps = 19/148 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQ------TGAKVNIDDDGTVKIASSSLAEIEAAREMIR----- 611
           +  ++G  GK I+ ++           ++  D+   V      L E+E      R     
Sbjct: 580 VERIVGSTGKPIKALLGDGSFLRGLKPEMFTDEQFGVPTVRDILKELEKPGRDPRPQFKA 639

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        +   + +G V  V  FGAFV     +DGLVHIS LS   V    DVV
Sbjct: 640 AQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVV 699

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           K GD V VK+L+ D  R +I LS ++ D
Sbjct: 700 KAGDIVKVKVLEVDVARKRIALSCRLSD 727


>gi|30141902|emb|CAD30282.1| 30S ribosomal protein S1 [Thermus thermophilus HB27]
          Length = 536

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + +T+      + KG+V  V DFG FV      +GLVH+S+L  +RV   + + K+G
Sbjct: 369 DPWQQLTEKYPPGTVLKGKVTGVTDFGVFVEIEPGIEGLVHVSELDHKRVENPAALFKKG 428

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           D + V +L+ D    ++ LS K +    
Sbjct: 429 DEMEVVVLNIDPVEQRVSLSRKRLLPPP 456



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ +   V    +G+VV +  FGAFV      +GL+HIS+LS  +R    S+VVKE
Sbjct: 282 DPWTTVAEKYPVGTRVRGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKE 341

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  ++ L +K    +  + +
Sbjct: 342 GDEVEAVVLRLDPEERRLSLGLKQTQPDPWQQL 374



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           +G +V+  I+E    K      G V ++  ++ E E  ++   +     E  ++ +G VV
Sbjct: 165 VGQQVLAKIIEFHRRK------GRVILSRRAVLE-EEQKKAREAFLKSLEPGQVVEGTVV 217

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +V DFG FV+     DGLVH S+++  R     +V+++G  V  ++L  D ++ ++ LS+
Sbjct: 218 EVTDFGVFVNLGP-VDGLVHRSEITWGRFNHPREVIQKGQKVKARVLSVDPEKERVNLSI 276

Query: 688 KVVDQNTG 695
           K +  +  
Sbjct: 277 KALIPDPW 284



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 602 EIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--A 658
            +EAA +   +         +I  G+VV V   G  V      +G++  +QL+T+ +   
Sbjct: 14  SMEAALQETEARLEKRVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPFNQLTTKPLSEE 73

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +  +++  GD V V++L  D + G+I LS K ++
Sbjct: 74  ELRNLLSPGDEVKVQVLRVDPETGQILLSRKKIE 107



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A+E    I ++ E  +     + + +  G          G +  SQL   RV    + V
Sbjct: 107 EAQEKWDRIQELYEKGEPVTVTIKERVKGGVVAEL-DGIQGFMPASQLDLRRVPNLDEFV 165

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             G  V  K+++F  R G++ LS + V +   K
Sbjct: 166 --GQQVLAKIIEFHRRKGRVILSRRAVLEEEQK 196


>gi|320530146|ref|ZP_08031216.1| general stress protein 13 family protein [Selenomonas artemidis
           F0399]
 gi|320137579|gb|EFW29491.1| general stress protein 13 family protein [Selenomonas artemidis
           F0399]
          Length = 173

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + +FGAFV     + GL+HIS+++   V    D +KE DTV VK+L  DDRGKI LS+
Sbjct: 39  TGITNFGAFVELPEGKTGLIHISEVADVYVNDVHDFLKERDTVRVKVLTVDDRGKIGLSI 98

Query: 688 KVVD 691
           K + 
Sbjct: 99  KALQ 102


>gi|293379547|ref|ZP_06625689.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
 gi|292641856|gb|EFF60024.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
          Length = 409

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 278 PWSEIDTKAPVGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 337

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 338 EVKVKVLEIHPEEHRIALSIKALEEKPA 365



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 169 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 227

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SDV+   D V VK+L  + ++ ++ LS+K         I
Sbjct: 228 GLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDTQPGPWSEI 282



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
                E   + E         +V  + KG+V+ + D    +   G   +G+V   +LST 
Sbjct: 4   FDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIIGIEGAGVEGVVPAKELSTL 63

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
            V   ++VVK GD + + ++    + K      LS + +D
Sbjct: 64  PVEDINEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 103


>gi|293570248|ref|ZP_06681317.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
 gi|291609655|gb|EFF38916.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
          Length = 409

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 278 PWSEIDTKAPVGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 337

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 338 EVKVKVLEIHPEEHRIALSIKALEEKPA 365



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 169 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 227

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SDV+   D V VK+L  + ++ ++ LS+K         I
Sbjct: 228 GLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDTQPGPWSEI 282



 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
                E   + E         +V  + KG+V+ + D    V   G   +G+V   +LST 
Sbjct: 4   FDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTL 63

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
            V   ++VVK GD + + ++    + K      LS + +D
Sbjct: 64  PVEDINEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 103


>gi|257898849|ref|ZP_05678502.1| ribosomal protein S1 [Enterococcus faecium Com15]
 gi|257836761|gb|EEV61835.1| ribosomal protein S1 [Enterococcus faecium Com15]
          Length = 417

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 286 PWSEIDTKAPVGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 345

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 346 EVKVKVLEIHPEEHRIALSIKALEEKPA 373



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 177 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 235

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SDV+   D V VK+L  + ++ ++ LS+K         I
Sbjct: 236 GLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDTQPGPWSEI 290



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           V        E   + E         +V  + KG+V+ + D    V   G   +G+V   +
Sbjct: 8   VMTEFDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKE 67

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
           LST  V   ++VVK GD + + ++    + K      LS + +D
Sbjct: 68  LSTLPVEDINEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 111


>gi|227551165|ref|ZP_03981214.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
 gi|257887717|ref|ZP_05667370.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
 gi|257896211|ref|ZP_05675864.1| ribosomal protein S1 [Enterococcus faecium Com12]
 gi|227179727|gb|EEI60699.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
 gi|257823771|gb|EEV50703.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
 gi|257832776|gb|EEV59197.1| ribosomal protein S1 [Enterococcus faecium Com12]
          Length = 417

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I     V  +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 286 PWSEIDTKAPVGAVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 345

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V VK+L+   +  +I LS+K +++   
Sbjct: 346 EVKVKVLEIHPEEHRIALSIKALEEKPA 373



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S          E  + I        +  G+V ++ DFGAFV   G  D
Sbjct: 177 IEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAFVDL-GGID 235

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S++S   VAK SDV+   D V VK+L  + ++ ++ LS+K         I
Sbjct: 236 GLVHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDTQPGPWSEI 290



 Score = 41.1 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           V        E   + E         +V  + KG+V+ + D    +   G   +G+V   +
Sbjct: 8   VMTEFDQNQENNQSMEDAMKSVQEVKVGDVVKGEVLVIEDKQVIIGIEGAGVEGVVPAKE 67

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
           LST  V   ++VVK GD + + ++    + K      LS + +D
Sbjct: 68  LSTLPVEDINEVVKVGDVLDLVVISTIGKDKENGSYLLSKRRLD 111


>gi|160934895|ref|ZP_02082281.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
 gi|156866348|gb|EDO59720.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
          Length = 722

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           + +   IG+G   ++ IV++      +  D+    +  + + E++  +  +         
Sbjct: 600 ESVAQQIGVGVPTLQDIVKEFLKPGRDPRDELPPPLLRTDILELKDLKPGME-------- 651

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
                G V  V+DFGAFV     +DGLVHISQ+  + +   S+V+K GD V V +L+ D 
Sbjct: 652 ---LTGTVRNVIDFGAFVDIGVHQDGLVHISQICNKYIKHPSEVLKVGDIVKVWVLNADP 708

Query: 680 -RGKIKLSMKVVDQ 692
            + +I L+MK   Q
Sbjct: 709 VKKRIGLTMKEPKQ 722


>gi|226305942|ref|YP_002765902.1| transcriptional accessory protein [Rhodococcus erythropolis PR4]
 gi|226185059|dbj|BAH33163.1| putative transcriptional accessory protein [Rhodococcus
           erythropolis PR4]
          Length = 783

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +     +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V 
Sbjct: 632 EKVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPREVVKSGDVVK 691

Query: 672 VKLLDFDD-RGKIKLSMKVVDQ 692
           VK+L+ D+ R +I L++++ D+
Sbjct: 692 VKVLEVDEARQRIGLTLRLDDE 713


>gi|293604133|ref|ZP_06686541.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
 gi|292817358|gb|EFF76431.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
          Length = 792

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVLEVDVA 730

Query: 680 RGKIKLSMKVVD 691
           R ++ L+M++ D
Sbjct: 731 RKRVALTMRLND 742


>gi|268610466|ref|ZP_06144193.1| RNA binding S1 [Ruminococcus flavefaciens FD-1]
          Length = 155

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 46/80 (57%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               E+ KIY G+V  +  +GAFV   G   G+VHIS+++   V++  D + E   V VK
Sbjct: 1   MQQLEIGKIYNGKVKGITQYGAFVDIEGGGSGMVHISEIANTYVSEIRDHLTENQEVKVK 60

Query: 674 LLDFDDRGKIKLSMKVVDQN 693
           ++  ++ GK+ LS+K   +N
Sbjct: 61  VIGINEAGKVSLSIKKAAEN 80


>gi|229491353|ref|ZP_04385177.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229321638|gb|EEN87435.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 779

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +     +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V 
Sbjct: 632 EKVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPREVVKSGDVVK 691

Query: 672 VKLLDFDD-RGKIKLSMKVVDQ 692
           VK+L+ D+ R +I L++++ D+
Sbjct: 692 VKVLEVDEARQRIGLTLRLDDE 713


>gi|103486980|ref|YP_616541.1| 30S ribosomal protein S1 [Sphingopyxis alaskensis RB2256]
 gi|98977057|gb|ABF53208.1| SSU ribosomal protein S1P [Sphingopyxis alaskensis RB2256]
          Length = 570

 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     I  S  A +E  R   RS      E  +I +G V  + D+GAFV   G  DGL+
Sbjct: 168 DRRRGNIVVSRRAILEETRAEQRSGLIQNLEEGQIIEGAVKNITDYGAFVDL-GGIDGLL 226

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           H++ +S +RV   S+++  GDTV V+++  + D  +I L MK ++ +  +
Sbjct: 227 HVTDMSYKRVNHPSEIINIGDTVKVQIIRINRDTQRISLGMKQLESDPWE 276



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V     G V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 273 DPWEGVAAKYPVGAKLSGTVTNITDYGAFVELEPGIEGLVHVSEMSWVKKNVHPGKIVST 332

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              V V +L+ D D+ +I L +K    N  
Sbjct: 333 SQEVEVIVLEVDSDKRRISLGLKQAQSNPW 362



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 32/212 (15%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G VK+  D+    D+ G +   H+  M +K     S I  +           + + + + 
Sbjct: 205 GAVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEIINIG----------DTVKVQII 254

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  R    I   M ++ S+    +    P    ++     I +      +  G + +  +
Sbjct: 255 RINRDTQRISLGMKQLESDPWEGVAAKYPVGAKLSGTVTNITDYGAFVELEPGIEGLVHV 314

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +               +A      +  +   V  I
Sbjct: 315 SEMSWVKKNVHPGKIVSTSQEVEVIVLEVDSDKRRISLGLKQAQSNPWGAFAEAHPVGSI 374

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            +G+V    +FG F+   G  DG+VH+S ++ 
Sbjct: 375 VEGEVKNATEFGLFIGLPGDVDGMVHMSDIAW 406



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 1/112 (0%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLV 647
           +   + +    L +   A     +     + N +    V++V D G  V        G +
Sbjct: 433 EKERISLGIKQLEKGAPAVGGGMAAAGSLKKNDVVTVSVLEVRDNGLEVQAGESGVTGFI 492

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
             + L  +R  +  +  + G      ++ FD   K   S+K +     K  V
Sbjct: 493 KRADLGRDRDEQRPERYQVGQKFDAMVVGFDRSKKPNFSVKAMQIAEEKEAV 544


>gi|319768034|ref|YP_004133535.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
 gi|317112900|gb|ADU95392.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
          Length = 121

 Score = 86.9 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 9   IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 68

Query: 681 GKIKLSMKVVDQNTGKP 697
            +  LS+K ++    K 
Sbjct: 69  RRASLSLKALEPAGEKE 85


>gi|291482888|dbj|BAI83963.1| hypothetical protein BSNT_00811 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 719

 Score = 86.9 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 132/358 (36%), Gaps = 53/358 (14%)

Query: 356 TREDEQ-YVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ  V+ L    R  + +  N       +  E++R   P  +      +  ARR  
Sbjct: 387 SRETEQFIVNVLKDMPRKIYYVIVNEAGASVYSASELAREEFPDLKVEERSAVSIARRLQ 446

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 447 DPLAELVKIDPKSVGVGQYQHDVSQKRLNESLRFVVETVVNQVGVNVNTASAALLQYVAG 506

Query: 455 ISKPVAGIAMGLVKDGDDFII---LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           +SK VAG  +   ++   F     L DI                   G       +   G
Sbjct: 507 LSKSVAGNVVKKREEIGKFSNRKELKDIPRLGAKTYEQCIGFLRVQEG----TEPLDRTG 562

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I            K+  L   +  +  L +   QL               +    +G+G 
Sbjct: 563 IHPESYKETKALLKKLGLSTEHIGTAELKDKINQLAL------------SETAKELGIGE 610

Query: 572 KVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             ++ I EQ T  + +  D+    +  + + ++E  +E +             +G V  V
Sbjct: 611 ITLKDICEQLTRPERDPRDEVPKPLLKTDVLQLEDLKEGME-----------LQGTVRNV 659

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +DFGAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ LSM
Sbjct: 660 VDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSM 717


>gi|114555245|ref|XP_001158613.1| PREDICTED: nucleolar protein of 40 kDa isoform 3 [Pan troglodytes]
 gi|30316450|gb|AAF72518.3| LDC4 [Homo sapiens]
 gi|119628030|gb|EAX07625.1| zinc finger, CCHC domain containing 17, isoform CRA_d [Homo
           sapiens]
          Length = 217

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G  + GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGKPI 698
           SMKVV+Q TGK +
Sbjct: 62  SMKVVNQGTGKDL 74


>gi|30264941|ref|NP_847318.1| general stress protein 13 [Bacillus anthracis str. Ames]
 gi|47530437|ref|YP_021786.1| general stress protein 13 [Bacillus anthracis str. 'Ames Ancestor']
 gi|47566934|ref|ZP_00237651.1| MW0837 [Bacillus cereus G9241]
 gi|49187760|ref|YP_031013.1| general stress protein 13 [Bacillus anthracis str. Sterne]
 gi|49480341|ref|YP_038921.1| general stress protein 13 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52140622|ref|YP_086205.1| general stress protein 13 [Bacillus cereus E33L]
 gi|65316891|ref|ZP_00389850.1| COG1098: Predicted RNA binding protein (contains ribosomal protein
           S1 domain) [Bacillus anthracis str. A2012]
 gi|165870810|ref|ZP_02215462.1| general stress protein 13 [Bacillus anthracis str. A0488]
 gi|167634998|ref|ZP_02393316.1| general stress protein 13 [Bacillus anthracis str. A0442]
 gi|167640042|ref|ZP_02398310.1| general stress protein 13 [Bacillus anthracis str. A0193]
 gi|170685687|ref|ZP_02876910.1| general stress protein 13 [Bacillus anthracis str. A0465]
 gi|170706916|ref|ZP_02897373.1| general stress protein 13 [Bacillus anthracis str. A0389]
 gi|177652259|ref|ZP_02934762.1| general stress protein 13 [Bacillus anthracis str. A0174]
 gi|190567121|ref|ZP_03020036.1| general stress protein 13 [Bacillus anthracis Tsiankovskii-I]
 gi|196033216|ref|ZP_03100629.1| general stress protein 13 [Bacillus cereus W]
 gi|196040462|ref|ZP_03107762.1| general stress protein 13 [Bacillus cereus NVH0597-99]
 gi|196043862|ref|ZP_03111099.1| general stress protein 13 [Bacillus cereus 03BB108]
 gi|218906099|ref|YP_002453933.1| general stress protein 13 [Bacillus cereus AH820]
 gi|225866875|ref|YP_002752253.1| general stress protein 13 [Bacillus cereus 03BB102]
 gi|227817669|ref|YP_002817678.1| general stress protein 13 [Bacillus anthracis str. CDC 684]
 gi|229603942|ref|YP_002869144.1| general stress protein 13 [Bacillus anthracis str. A0248]
 gi|254687233|ref|ZP_05151090.1| general stress protein 13 [Bacillus anthracis str. CNEVA-9066]
 gi|254725246|ref|ZP_05187029.1| general stress protein 13 [Bacillus anthracis str. A1055]
 gi|254735430|ref|ZP_05193138.1| general stress protein 13 [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740697|ref|ZP_05198388.1| general stress protein 13 [Bacillus anthracis str. Kruger B]
 gi|254753041|ref|ZP_05205077.1| general stress protein 13 [Bacillus anthracis str. Vollum]
 gi|254761384|ref|ZP_05213405.1| general stress protein 13 [Bacillus anthracis str. Australia 94]
 gi|300119698|ref|ZP_07057238.1| general stress protein 13 [Bacillus cereus SJ1]
 gi|301056390|ref|YP_003794601.1| RNA binding S1 domain-containing protein [Bacillus anthracis CI]
 gi|30259616|gb|AAP28804.1| general stress protein 13 [Bacillus anthracis str. Ames]
 gi|47505585|gb|AAT34261.1| general stress protein 13 [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556252|gb|EAL14586.1| MW0837 [Bacillus cereus G9241]
 gi|49181687|gb|AAT57063.1| general stress protein 13 [Bacillus anthracis str. Sterne]
 gi|49331897|gb|AAT62543.1| general stress protein 13 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51974091|gb|AAU15641.1| general stress protein 13 [Bacillus cereus E33L]
 gi|164713319|gb|EDR18844.1| general stress protein 13 [Bacillus anthracis str. A0488]
 gi|167512123|gb|EDR87501.1| general stress protein 13 [Bacillus anthracis str. A0193]
 gi|167529748|gb|EDR92497.1| general stress protein 13 [Bacillus anthracis str. A0442]
 gi|170128019|gb|EDS96889.1| general stress protein 13 [Bacillus anthracis str. A0389]
 gi|170670151|gb|EDT20891.1| general stress protein 13 [Bacillus anthracis str. A0465]
 gi|172082265|gb|EDT67331.1| general stress protein 13 [Bacillus anthracis str. A0174]
 gi|190561625|gb|EDV15595.1| general stress protein 13 [Bacillus anthracis Tsiankovskii-I]
 gi|195994645|gb|EDX58600.1| general stress protein 13 [Bacillus cereus W]
 gi|196025198|gb|EDX63868.1| general stress protein 13 [Bacillus cereus 03BB108]
 gi|196028594|gb|EDX67201.1| general stress protein 13 [Bacillus cereus NVH0597-99]
 gi|218537073|gb|ACK89471.1| general stress protein 13 [Bacillus cereus AH820]
 gi|225790437|gb|ACO30654.1| general stress protein 13 [Bacillus cereus 03BB102]
 gi|227007010|gb|ACP16753.1| general stress protein 13 [Bacillus anthracis str. CDC 684]
 gi|229268350|gb|ACQ49987.1| general stress protein 13 [Bacillus anthracis str. A0248]
 gi|298722926|gb|EFI63828.1| general stress protein 13 [Bacillus cereus SJ1]
 gi|300378559|gb|ADK07463.1| RNA binding S1 domain protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 114

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 10  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 69

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 70  RKMSLSLKAAKRKQGRILI 88


>gi|304393050|ref|ZP_07374979.1| ribosomal protein S1 [Ahrensia sp. R2A130]
 gi|303294815|gb|EFL89186.1| ribosomal protein S1 [Ahrensia sp. R2A130]
          Length = 567

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     I  S  A +E  R   RS      E  +I +G V  + D+GAFV   G  DGL+
Sbjct: 166 DRRRGNIVVSRRAILEETRAEQRSEIVQNLEEGQIVEGVVKNITDYGAFVDL-GGIDGLL 224

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           H++ ++  RV   +++++ G+TV V+++  + +  +I L MK ++ +    I
Sbjct: 225 HVTDMAWRRVNHPTEILQIGETVKVQIIRVNQETHRISLGMKQLESDPWDSI 276



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI      +    G++  + D+GAFV      +GL+H+S++S  ++      +V  
Sbjct: 271 DPWDSIGAKYPNDTKVNGRITNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVAT 330

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
              V V +L+ D  + +I L +K    N  
Sbjct: 331 SQEVEVIVLEVDPGKRRISLGLKQNLSNPW 360



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              +  D      + +G+V    +FG F+   G  DG+VH+S L   R   +  +   +G
Sbjct: 359 PWDTFADQYPAGTVVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWSRSGEEAIEDFNKG 418

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D V   +LD D D+ +I L +K +D
Sbjct: 419 DMVKAVVLDVDVDKERISLGIKQLD 443



 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + T     N I   +V+KV D G          +  +    LS +R  +  +    G  +
Sbjct: 450 ADTGEIRRNAIVTTEVMKVTDGGLETRIVDTDIEAFIRRGDLSRDRDEQRPERFSVGQKI 509

Query: 671 WVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             ++  +D + +   LS+K ++    K  V
Sbjct: 510 DARVTQYDRKTRKANLSVKALEIAEEKEAV 539


>gi|229021837|ref|ZP_04178413.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1272]
 gi|228739477|gb|EEL89897.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1272]
          Length = 722

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 130/350 (37%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   +R+ F +  N       +  +++R   P  +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQNVKRDVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + +  LQ            +   ++     +G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSKNDVGKPNLQKSLEG-------VDVSKLSQETEIGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 IGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|84500258|ref|ZP_00998524.1| 30S ribosomal protein S1 [Oceanicola batsensis HTCC2597]
 gi|84392192|gb|EAQ04460.1| 30S ribosomal protein S1 [Oceanicola batsensis HTCC2597]
          Length = 553

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIANLEEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPW 266



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ +++G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVAAKYPLSSVHQGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDGAKRRVSLGLKQTQRNPWE 354



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVI---------- 245

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++  +    +    P   +       I +      +  G + +  +
Sbjct: 246 KINKETHRISLGMKQLQEDPWDLVAAKYPLSSVHQGRVTNITDYGAFVELEPGVEGLVHV 305

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +                  R       +      +
Sbjct: 306 SEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGAKRRVSLGLKQTQRNPWEVFAETHPEGTV 365

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + +FG FV   G  DG+VH+S LS  ER        ++GD V   + + D ++
Sbjct: 366 VEGEVKNITEFGLFVGLDGDIDGMVHLSDLSWDERGEDAIQSYRKGDMVQAVVSEVDTEK 425

Query: 681 GKIKLSMKVV 690
            +I LS+K V
Sbjct: 426 ERISLSIKNV 435



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I   +V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSIITVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRSEQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKVDVRVTNVDSKSRRLGLSIKAREIAEEKEAV 529


>gi|260424761|ref|ZP_05733199.2| S1 RNA-binding domain protein [Dialister invisus DSM 15470]
 gi|260403099|gb|EEW96646.1| S1 RNA-binding domain protein [Dialister invisus DSM 15470]
          Length = 174

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 44/76 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  +  FG FV     + GLVHIS+++ E V+  +D +K  D V VK++  
Sbjct: 4   EVGSIVEGTVTGLAKFGVFVEIADKKIGLVHISEVAGEYVSDVNDYLKLHDKVKVKIISV 63

Query: 678 DDRGKIKLSMKVVDQN 693
           D++GKI LS+K     
Sbjct: 64  DEKGKIALSIKQAQAE 79


>gi|313674969|ref|YP_004052965.1| SSU ribosomal protein s1p [Marivirga tractuosa DSM 4126]
 gi|312941667|gb|ADR20857.1| SSU ribosomal protein S1P [Marivirga tractuosa DSM 4126]
          Length = 660

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N  +D  V      + +     +    I + 
Sbjct: 160 QIDVKPIRDF----DVFVGKKMEVKVVKINYSNDNVVVSHKVLIEKDLE--KQKAEILNN 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G +  + +FG F+   G  DGL+HI+ +S  R+    +V+K  + V V +LD
Sbjct: 214 LEKGQVLEGVIKNMTNFGVFIDL-GGVDGLLHITDISWGRINHPEEVLKLDEKVKVVVLD 272

Query: 677 FDD-RGKIKLSMKVVDQNTGKPIV 699
           FD+ + +I L MK +  +    + 
Sbjct: 273 FDEGKKRISLGMKQLTSHPWDSLA 296



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 19/148 (12%)

Query: 567 IGMGGKVIRGIVEQTGAK--------VNIDDDGTVKIASSSLAEIEAA---REMIRSITD 615
           I  G + +  + E + ++        +N+ D+    + +    E + +   +++     +
Sbjct: 321 IAPGVEGLIHVSEMSWSQHLRNPQDFINVGDELEAVVLTLDKEERKMSLGIKQLTEDPWN 380

Query: 616 VPEVNKIY------KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGD 668
             EV   Y      KG V  + +FG F+      DGLVH+S LS  +++   S+ VK G+
Sbjct: 381 KKEVLTKYAVGTEHKGVVRNMTNFGLFIELEEGIDGLVHVSDLSWTKKIKHPSEFVKVGE 440

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            + V +L+ D D  ++ L  K +++N  
Sbjct: 441 ELNVVVLELDVDNRRLALGHKQLEENPW 468



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               S+ +  +V    KG++V V D+GAF+      +GL+H+S++S  + +    D +  
Sbjct: 290 HPWDSLAEGLDVGSKVKGKIVNVADYGAFLEIAPGVEGLIHVSEMSWSQHLRNPQDFINV 349

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD +   +L  D +  K+ L +K + ++  
Sbjct: 350 GDELEAVVLTLDKEERKMSLGIKQLTEDPW 379


>gi|182623946|ref|ZP_02951734.1| ribosomal protein S1 family [Clostridium perfringens D str.
           JGS1721]
 gi|177910839|gb|EDT73193.1| ribosomal protein S1 family [Clostridium perfringens D str.
           JGS1721]
          Length = 378

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +  A ++ K  ++ +   +   +      L  F P  +      + +  ++G   +V
Sbjct: 98  WDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNCLRVFMPASQCAGRRIENLEELVGKTLEV 157

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                      +  + +    + S  + + E      +++    +  +  KG+V ++  F
Sbjct: 158 ---------RVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKF 208

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +I LS+K V +
Sbjct: 209 GAFVDI-GGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIK 267

Query: 693 NTGKPI 698
           N  + +
Sbjct: 268 NPWETL 273



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 21/197 (10%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE- 579
           ++  K  R  +++           +       ++       ++  +   G  V  G VE 
Sbjct: 160 IEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKFGAFVDIGGVEG 219

Query: 580 -------------QTGAKVNIDDDGTVKIASSSLAEIEAA------REMIRSITDVPEVN 620
                        +    V++ D+  V ++   +     A       +      +  +V 
Sbjct: 220 LVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIKNPWETLEGLKVG 279

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ DD 
Sbjct: 280 DVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNIDDE 339

Query: 680 RGKIKLSMKVVDQNTGK 696
             K+ LS+K   + + +
Sbjct: 340 NKKMSLSIKDAVETSNE 356


>gi|326799943|ref|YP_004317762.1| Tex-like protein [Sphingobacterium sp. 21]
 gi|326550707|gb|ADZ79092.1| Tex-like protein [Sphingobacterium sp. 21]
          Length = 746

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +  +  +V     G V  + +FGAFV     +DGLVH+SQ++   +   ++VVK    V 
Sbjct: 629 NTVNDLKVGMKLPGIVTNITNFGAFVDIGVHQDGLVHLSQMANRFIKDPNEVVKVHQQVE 688

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNT 694
           V +++ D +R +I LSMK  ++  
Sbjct: 689 VTVIEVDANRNRISLSMKTEEKAP 712


>gi|317401789|gb|EFV82404.1| tex protein [Achromobacter xylosoxidans C54]
          Length = 791

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V +FGAFV     +DGLVHIS L+ + V    DVV+ G TV VK+L+ D  
Sbjct: 671 MVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVLEVDVA 730

Query: 680 RGKIKLSMKVVD 691
           R ++ L+M++ D
Sbjct: 731 RKRVALTMRLND 742


>gi|229153088|ref|ZP_04281268.1| RNA binding S1 domain protein [Bacillus cereus m1550]
 gi|228630354|gb|EEK87003.1| RNA binding S1 domain protein [Bacillus cereus m1550]
          Length = 119

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 15  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 74

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 75  RKMSLSLKAAKRKQGRILI 93


>gi|42784085|ref|NP_981332.1| general stress protein 13 [Bacillus cereus ATCC 10987]
 gi|206976489|ref|ZP_03237396.1| general stress protein 13 [Bacillus cereus H3081.97]
 gi|217962367|ref|YP_002340939.1| general stress protein 13 [Bacillus cereus AH187]
 gi|222098354|ref|YP_002532412.1| general stress protein 13 [Bacillus cereus Q1]
 gi|42740016|gb|AAS43940.1| general stress protein 13 [Bacillus cereus ATCC 10987]
 gi|206745413|gb|EDZ56813.1| general stress protein 13 [Bacillus cereus H3081.97]
 gi|217068117|gb|ACJ82367.1| general stress protein 13 [Bacillus cereus AH187]
 gi|221242413|gb|ACM15123.1| general stress protein 13 [Bacillus cereus Q1]
 gi|324328780|gb|ADY24040.1| general stress protein 13 [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 114

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 10  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 69

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 70  RKMSLSLKAAKRKQGRILI 88


>gi|237746992|ref|ZP_04577472.1| small subunit ribosomal protein S1 [Oxalobacter formigenes HOxBLS]
 gi|229378343|gb|EEO28434.1| small subunit ribosomal protein S1 [Oxalobacter formigenes HOxBLS]
          Length = 569

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      S   +  A++  +     +  ++   L+    
Sbjct: 76  DYVSVAIESLENGYGDTILSRDKAKRLASWLALEKAMESGEIVTGTVNGKVKGGLTVLTN 135

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK +   V +   K N      V ++  ++ E  
Sbjct: 136 GIRAFLPGSLVDTRP---VKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEAS 187

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   I  G V  + D+GAF+   G  DGL+HI+ L+  RV   S+++
Sbjct: 188 MGEERQKLMETLKEG-TIVNGVVKNITDYGAFIDL-GGIDGLLHITDLAWRRVRHPSEML 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  +  K+L +D ++ ++ L +K +  +  
Sbjct: 246 TVGQEITAKVLKYDQEKNRVSLGVKQLGDDPW 277



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VVK GD V V +L+ D +R +
Sbjct: 292 GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVKLGDEVEVMVLEIDEERRR 351

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 352 ISLGMKQCKPNPWEE 366



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +   +  G V  V   GA +      +G +  S++S +RV      +K G
Sbjct: 449 DPFNNYIAMNDKGTVVSGTVKSVEPKGAVIQLNDDVEGYLRASEISRDRVEDAGTHLKVG 508

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D + V +++ D + + ++LS+K  DQ
Sbjct: 509 DKLDVMIINIDRKSRTLQLSIKAKDQ 534



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +            +  +      G +  + DFG F+   G  D
Sbjct: 343 LEIDEERRRISLGMKQCKPN----PWEEFAETHKKGDKVSGAIKSITDFGVFIGLPGNID 398

Query: 645 GLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +T+    K+GD +   +L  D +R ++ L +K ++ + 
Sbjct: 399 GLVHLSDLSWTEPGETAVHNFKKGDELEAVVLAIDVERERVSLGVKQLEGDP 450


>gi|124005220|ref|ZP_01690062.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134]
 gi|123989472|gb|EAY29033.1| 30S ribosomal protein S1 [Microscilla marina ATCC 23134]
          Length = 596

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             +E    K+N  +D  V      + +     E    I +  E  ++ +G +  + +FG 
Sbjct: 170 KKMEVKVVKINYANDNVVVSHKVLIEKDLE--EQKARILNNLEKGQVLEGVIKNMTNFGV 227

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           F+   G  DGL+HI+ +S  R++   +V+     V V +LDFDD + +I L MK +  + 
Sbjct: 228 FIDL-GGVDGLLHITDISWGRISHPEEVLNLDQKVNVVVLDFDDEKKRISLGMKQLTPHP 286

Query: 695 GKPI 698
            + +
Sbjct: 287 WESL 290



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +KG V  +  FG F+      DGLVH+S LS  ++V   S+ VK  D + V +L+ D D 
Sbjct: 389 HKGIVRNLTSFGLFIELEEGIDGLVHVSDLSWTKKVKHPSEFVKVNDELEVVVLELDVDN 448

Query: 681 GKIKLSMKVVDQNTG 695
            ++ L  K +++N  
Sbjct: 449 KRLALGHKQLEENPW 463



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               S+ +  +V    KG++V V D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 285 HPWESLPEEIQVGTKVKGRIVNVADYGAFLEVIPGVEGLIHVSEMSWSQHLRNPQDFIKV 344

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D +   +L  D +  K+ L +K +  +  
Sbjct: 345 SDELEAVVLTLDREERKMSLGIKQLTDDPW 374



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + D+  T         E  A  E +   T    +  ++  G VVK++D    ++     D
Sbjct: 9   DWDNVETKSFGLGYSEEKRAELEKMYDETLTQVQEKEVVTGTVVKIVDREVILNIGFKSD 68

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
           GLV +S+          D +K GD V V + +  D  G++ LS K
Sbjct: 69  GLVPLSEFR-----DMPD-LKSGDEVEVFIENQEDANGQLILSRK 107


>gi|109000931|ref|XP_001098288.1| PREDICTED: nucleolar protein of 40 kDa isoform 2 [Macaca mulatta]
          Length = 217

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G  + GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGKPI 698
           SMKVV+Q TGK +
Sbjct: 62  SMKVVNQGTGKDL 74


>gi|257868302|ref|ZP_05647955.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257874425|ref|ZP_05654078.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257877907|ref|ZP_05657560.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
 gi|257802416|gb|EEV31288.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257808589|gb|EEV37411.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257812073|gb|EEV40893.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
          Length = 162

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +          EV    KG+V  + +FGAF+     + GLVHIS++S   V    DV+  
Sbjct: 8   KIRRNIFYMSIEVGAKLKGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLSV 67

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           GD V V +    + GKI LS++  +    +
Sbjct: 68  GDEVTVLVTAIGNDGKIGLSIRKAEDKPEE 97


>gi|16801118|ref|NP_471386.1| 30S ribosomal protein S1 [Listeria innocua Clip11262]
 gi|16414553|emb|CAC97282.1| lin2052 [Listeria innocua Clip11262]
 gi|313618132|gb|EFR90228.1| 30S ribosomal protein S1 [Listeria innocua FSL S4-378]
          Length = 381

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I++   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 262 PWDGISEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQ 321

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           TV VK+L+ + D  ++ LS+K +     + 
Sbjct: 322 TVEVKVLEVNEDDKRLSLSIKDLQDAPVEE 351



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVENEKANQKQALLNEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   + ++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYKHIATPQEALEEGQKVKVKVIGIDPENERISLSIKATLPGPW 263



 Score = 44.1 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDVLV-LSKRKVDAE 89


>gi|83950988|ref|ZP_00959721.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM]
 gi|83838887|gb|EAP78183.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM]
          Length = 794

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 21/145 (14%)

Query: 564 RNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----------- 606
           R ++   G+ IR I+  +       A+  +DD   +      LAE+E             
Sbjct: 575 RKIVAACGRDIRAIMGDSAALKGLRAEQFVDDSFGLPTVRDILAELEKPGRDPRPSFKTA 634

Query: 607 --REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E I SITD+     + +G V  V  FGAFV     +DGLVH+SQL+   V    +VV
Sbjct: 635 SFAEGIDSITDLKPGMSL-EGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVV 693

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMK 688
           K GD V V++ + D  R +I LSM+
Sbjct: 694 KAGDVVRVRVTEIDVPRKRIGLSMR 718


>gi|229053908|ref|ZP_04195343.1| RNA binding S1 domain protein [Bacillus cereus AH603]
 gi|228721449|gb|EEL72969.1| RNA binding S1 domain protein [Bacillus cereus AH603]
          Length = 162

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           +  GKI LS+K   +
Sbjct: 64  EKDGKIGLSIKKAKE 78


>gi|332254548|ref|XP_003276391.1| PREDICTED: nucleolar protein of 40 kDa-like isoform 3 [Nomascus
           leucogenys]
          Length = 216

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G  + GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGKPI 698
           SMKVV+Q TGK +
Sbjct: 62  SMKVVNQGTGKDL 74


>gi|89898347|ref|YP_515457.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
 gi|89331719|dbj|BAE81312.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
          Length = 581

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+NID    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINIDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGVVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 183 KILKINIDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGVVKNITDFGVFLDLDGI 242

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 243 DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHN-----PWED 297

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K   G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V 
Sbjct: 298 IEKKYPPGKRVSGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVE 357

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
             +L    D GKI L +K  + N    I
Sbjct: 358 AIVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD+V  K++  D D  K+
Sbjct: 484 GVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKV 543

Query: 684 KLSMKV 689
            LS+K 
Sbjct: 544 SLSVKE 549



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 102/249 (40%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +          ++ +  P    + I  + I  +I +        V
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVSGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNV 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+    + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVHAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LSSNPWNEI 472



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    +    E + I KGQ+++ +  G  V      +  +
Sbjct: 106 DEEGKVVLS---REKATRQRQWEHILAHCEEGS-IVKGQIIRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + DR  + +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINIDRRNVVVSRRELLE 203


>gi|332533241|ref|ZP_08409108.1| transcription accessory protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037320|gb|EGI73775.1| transcription accessory protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 797

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V +FGAFV     +DGLVHIS ++ + ++   +VVK GD V VK+++ 
Sbjct: 647 KPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKVKVVEV 706

Query: 678 D-DRGKIKLSMKVVD 691
           D  R +I  +M++ D
Sbjct: 707 DAARKRISFTMRLDD 721


>gi|330876614|gb|EGH10763.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 386

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    +  + E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +R+   S++V  G
Sbjct: 6   EREALLESLQEGQQV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRIKHPSEIVNVG 63

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D + VK+L +D +R ++ L +K + ++    I
Sbjct: 64  DEIDVKVLKYDRERNRVSLGLKQLGEDPWVAI 95



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
            +    ++     VN+ D+  VK+          +        +   +I      +    
Sbjct: 47  DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVT 106

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            +V  + D+G F       +GLVH+S++    +    S VV+ GD V V +LD D +R +
Sbjct: 107 ARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRR 166

Query: 683 IKLSMKVVDQNTGKP 697
           I L +K    N  + 
Sbjct: 167 ISLGIKQCKSNPWED 181



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +       V +   I +G V +V   GA +      +  +  S++S +RV    +V+KEG
Sbjct: 264 DPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATLKASEISRDRVEDARNVLKEG 323

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           + +  K++  D + + I LS+K  D    K  +
Sbjct: 324 EEIEAKIISVDRKSRVISLSIKSKDVEDEKEAI 356



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++  V    G  +  +V      ++ID++           +           +   
Sbjct: 141 IHPSKVVQV----GDEVEVMV------LDIDEERRRISLGIKQCKSN----PWEDFSGQF 186

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G +  + DFG F+   G  DGLVH+S +S   V +   V   K+GD +   +L
Sbjct: 187 NKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE-EAVRRFKKGDELDTVIL 245

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 246 SVDPERERISLGIKQLESDP 265


>gi|325264051|ref|ZP_08130783.1| S1 RNA binding domain protein [Clostridium sp. D5]
 gi|324030535|gb|EGB91818.1| S1 RNA binding domain protein [Clostridium sp. D5]
          Length = 717

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKG 625
           +G+G   ++ IV++             K A     E+               +   I KG
Sbjct: 602 LGVGEITLQDIVKELE-----------KPARDPRDEMPKPILRTDVLDMKDLKEGMILKG 650

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D  + +I+
Sbjct: 651 TVRNVIDFGVFVDIGVHQDGLVHISQITDRYIKHPLEAVSVGDIVDVKVMSVDLKKKRIQ 710

Query: 685 LSMKVV 690
           L+M+ +
Sbjct: 711 LTMRGL 716


>gi|260587033|ref|ZP_05852946.1| protein YhgF [Blautia hansenii DSM 20583]
 gi|260542523|gb|EEX23092.1| protein YhgF [Blautia hansenii DSM 20583]
          Length = 714

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKG 625
           +G+G   +R IV++             K       E+               +   + KG
Sbjct: 599 LGVGEMTLRDIVKELT-----------KPGRDPREEMPKPILRTDVLDMKDLKEGMVLKG 647

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV     +DGLVHISQ++   +    + V  GD V V +L  D  + +I 
Sbjct: 648 TVRNVIDFGAFVDIGVHQDGLVHISQMTERYIKHPLEAVSVGDVVDVMVLGVDMKKKRIS 707

Query: 685 LSMKVV 690
           L+MK +
Sbjct: 708 LTMKGI 713


>gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991139|gb|EEC57145.1| hypothetical protein BACPEC_01633 [Bacteroides pectinophilus ATCC
           43243]
          Length = 365

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + KG+V ++ DFGAFV      D L+H+SQ++ E V K SDV+K G  +  K++D + + 
Sbjct: 279 VVKGKVARMTDFGAFVELETGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDLNVEE 338

Query: 681 GKIKLSMKVVDQNTGKP 697
            KI LS+K + ++    
Sbjct: 339 KKISLSIKALLKDNASD 355



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 20/195 (10%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR---------- 564
            +++   +         L E          ++ +  P    + I   ++           
Sbjct: 83  QVLLTYRRLVAEEGNKKLEEAYNNKEVITAKVDKAIPGGLSVVIDEARVFIPASLISDTY 142

Query: 565 --NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
             ++    G+ +  ++ +   K        +      L   + A +  + +  + E + I
Sbjct: 143 EKDLTKFEGQEVSFVITEYNPK-----KRRIIGDCKQLILAKKAEQAEKLLASIKEGDTI 197

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            +G V  V DFGAF+   G  DGL+HIS++S  R      V K GD+V   + + +   K
Sbjct: 198 -EGTVKNVTDFGAFIDL-GGVDGLLHISEMSWGRTENPKKVFKVGDSVKAFVKEINGS-K 254

Query: 683 IKLSMKVVDQNTGKP 697
           I LS+K  DQN    
Sbjct: 255 IALSLKYPDQNPWTD 269



 Score = 44.1 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V +    ++     DG++  S+ + +       VV EG
Sbjct: 8   QMLEESFKTIHTGEVVDGTVISVKEDEIVLNIGYKADGIITRSEYTNKPNVDLRTVVSEG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ + +    G
Sbjct: 68  DTMKAKVLKVNDGDGQVLLTYRRLVAEEG 96


>gi|188589736|ref|YP_001919939.1| 30S ribosomal protein S1 [Clostridium botulinum E3 str. Alaska E43]
 gi|188500017|gb|ACD53153.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E3
           str. Alaska E43]
          Length = 378

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E     T+  +   I+ G+VVK   FGAFV      +GLVHIS+++ E +AK SDV++ 
Sbjct: 265 KEPWTLHTNEIKSGMIFDGKVVKFASFGAFVEIFDGVEGLVHISEITDENIAKPSDVLEL 324

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
              V VK+LDF+  G ++ LS+K   + + +
Sbjct: 325 NQKVKVKVLDFNKEGKRLSLSIKDAVETSKE 355



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + +D      +AS    E E   +  + I D  +  +   G V K++ +GAFV
Sbjct: 151 TELEVRIIELDFRNNKIVASRKAIENEEYEKNRKVIWDSLKEGEKRTGVVKKLVKYGAFV 210

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  +GL+HIS LS  RV +  ++VKE D V V +   D +  K+ L +K +++   
Sbjct: 211 DI-GGVEGLIHISDLSWNRVNRPEEIVKENDKVEVYIGSVDRENQKLSLVLKDINKEPW 268



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                      +I KG+V++V +    V+   A DGL+   ++S +      DV+K  D 
Sbjct: 11  EEYDVKRINKGQILKGKVLEVNEKEVVVNINYAFDGLIAKEEVSIDD-KNPMDVLKVDDE 69

Query: 670 VWVKLLDF-DDRGKIKLSM-KVV 690
           + V ++   D  G ++LS+ K +
Sbjct: 70  IDVYVVSPNDGEGYVELSLIKAL 92


>gi|194015596|ref|ZP_03054212.1| general stress protein 13 (GSP13) [Bacillus pumilus ATCC 7061]
 gi|194013000|gb|EDW22566.1| general stress protein 13 (GSP13) [Bacillus pumilus ATCC 7061]
          Length = 130

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MATKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQV 60

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTGK 696
           K+L  D++ GKI LS++   +   +
Sbjct: 61  KVLSVDEKAGKISLSIRATQEAPER 85


>gi|284049365|ref|YP_003399704.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
 gi|283953586|gb|ADB48389.1| Tex-like protein [Acidaminococcus fermentans DSM 20731]
          Length = 724

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I +G +  V DFGAFV       GL+HIS +S +R+    DVV  G+TV VK++  
Sbjct: 649 KVGTILRGTIRNVTDFGAFVDIGIKTAGLIHISHMSQKRIKHPLDVVSAGETVQVKVISV 708

Query: 678 DD-RGKIKLSMKVVD 691
           D+ RG+I L++   D
Sbjct: 709 DEGRGRIGLALVTAD 723


>gi|206969559|ref|ZP_03230513.1| general stress protein 13 [Bacillus cereus AH1134]
 gi|218235815|ref|YP_002369692.1| general stress protein 13 [Bacillus cereus B4264]
 gi|218900051|ref|YP_002448462.1| general stress protein 13 [Bacillus cereus G9842]
 gi|206735247|gb|EDZ52415.1| general stress protein 13 [Bacillus cereus AH1134]
 gi|218163772|gb|ACK63764.1| general stress protein 13 [Bacillus cereus B4264]
 gi|218543520|gb|ACK95914.1| general stress protein 13 [Bacillus cereus G9842]
 gi|326942665|gb|AEA18561.1| general stress protein 13 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 114

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 10  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 69

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 70  RKMSLSLKAAKRKQGRILI 88


>gi|23099790|ref|NP_693256.1| general stress protein 13 [Oceanobacillus iheyensis HTE831]
 gi|22778020|dbj|BAC14291.1| polyribonucleotide nucleotidyltransferase (general stress protein
           13) [Oceanobacillus iheyensis HTE831]
          Length = 122

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +T+  E  +I +G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MTNKLEAGQIIEGKVTGIQPYGAFVSVDEETQGLVHISEITHGYVKDINEHLSVGDEVKV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNT 694
           K+++ D +R K+ LS++  ++  
Sbjct: 61  KVINVDEERNKVSLSIRATEEAP 83


>gi|321314149|ref|YP_004206436.1| putative RNA helicase [Bacillus subtilis BSn5]
 gi|320020423|gb|ADV95409.1| putative RNA helicase [Bacillus subtilis BSn5]
          Length = 719

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 132/358 (36%), Gaps = 53/358 (14%)

Query: 356 TREDEQ-YVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ  V+ L    R  + +  N       +  E++R   P  +      +  ARR  
Sbjct: 387 SRETEQFIVNVLRDMPRKIYYVIVNEAGASVYSASELAREEFPDLKIEERSAVSIARRLQ 446

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 447 DPLAELVKIDPKSVGVGQYQHDVSQKRLNESLRFVVETVVNQVGVNVNTASAALLQYVAG 506

Query: 455 ISKPVAGIAMGLVKDGDDFII---LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           +SK VAG  +   ++   F     L DI                   G       +   G
Sbjct: 507 LSKSVAGNVVKKREEIGKFSNRKELKDIPRLGAKTYEQCIGFLRVQEG----TEPLDRTG 562

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I            K+  L   +  +  L +   QL               +    +G+G 
Sbjct: 563 IHPESYKETKALLKKLGLSTEHIGTAELKDKINQLAL------------SETAKELGIGE 610

Query: 572 KVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             ++ I EQ T  + +  D+    +  + + ++E  +E +             +G V  V
Sbjct: 611 ITLKDICEQLTRPERDPRDEVPKPLLKTDVLQLEDLKEGME-----------LQGTVRNV 659

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +DFGAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ LSM
Sbjct: 660 VDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSM 717


>gi|229542267|ref|ZP_04431327.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229326687|gb|EEN92362.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 140

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E     +G+V  +  FGAFV       GLVHIS+++   V    D +K GD V VK+L+ 
Sbjct: 4   EAGSKLQGKVTGITHFGAFVELPDGSTGLVHISEVADNYVKDIHDHLKVGDIVEVKVLNV 63

Query: 678 DDRGKIKLS-MKVVDQ 692
           +  GKI LS  K  DQ
Sbjct: 64  EKDGKIGLSIRKAKDQ 79


>gi|225873902|ref|YP_002755361.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
 gi|225793852|gb|ACO33942.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
          Length = 637

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G V ++   + E E   +   ++  + E + I  G V  + D+GAFV   G  DGL+HI+
Sbjct: 247 GNVVVSRKEILEEEQTAKRSETLEHLEEGS-ILTGTVKNLTDYGAFVDM-GGIDGLLHIT 304

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            +S  R+    D+V  GD + VK+L FD D+ ++ L  K +  +    
Sbjct: 305 DMSWGRLTHPRDLVNVGDEIQVKVLKFDRDKQRVSLGFKQLTPDPWLD 352



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 115/295 (38%), Gaps = 24/295 (8%)

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMD-------AGVPISKPVAGIAMGLVKDGDDFI 474
           T+ +V E  E++G   ++      L + D          P++  VAG   G +       
Sbjct: 152 TVEVVIEREEAEGGFLLSYEKALRLRVWDTIEKAANEKTPVTGIVAGRVKGGLTVDIGIK 211

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI--SENIMVMALQQAKRGRLHIL 532
                S  E           G    +  ++++ K G +  S   ++   Q AKR      
Sbjct: 212 AFLPGSQLEIRPVRNLDAYIGQPIEVRVIKLNKKRGNVVVSRKEILEEEQTAKRSETLEH 271

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
            E   +L+ +   L ++   V++  I       ++ +      G +      VN+ D+  
Sbjct: 272 LEEGSILTGTVKNLTDYGAFVDMGGID-----GLLHITDMS-WGRLTHPRDLVNVGDEIQ 325

Query: 593 VKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           VK+      +   +        +     T+   V    +G+V+ V D+G+FV      +G
Sbjct: 326 VKVLKFDRDKQRVSLGFKQLTPDPWLDATERYPVGARVRGRVLSVTDYGSFVELEQGIEG 385

Query: 646 LVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           LVH+S+++  +R+   S ++K GD V   +L  +    +I L MK +  N  + +
Sbjct: 386 LVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDRRISLGMKQLQDNPWETL 440



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ D        +G+V  + DFGAF+      DGLVH+S LS  +RV   S+V+K+G
Sbjct: 436 PWETLGDKYPTGATVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKG 495

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + V   +L  + +  ++ L +K +  +  +
Sbjct: 496 EKVRAVVLGVEPENRRLSLGIKQLQPDVWE 525



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++  +  +      +  G+V++   FGAF+      +GL H+S+ + +  A  +  +++G
Sbjct: 522 DVWETFFEQHRTGDVVHGKVLRTAQFGAFIEIAEGVEGLCHVSEATDQHGAPVN--LEQG 579

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                K++  + D  K+ LS++ V +   +
Sbjct: 580 QEYDFKIIKMNPDEKKVGLSLRAVGEEASR 609


>gi|157877098|ref|XP_001686881.1| exosome complex exonuclease RRP41 [Leishmania major strain
           Friedlin]
 gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
           Friedlin]
          Length = 246

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 83/254 (32%), Gaps = 13/254 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR     R +    G L    GS     G ++       G RE     
Sbjct: 5   KEYVSPAGLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKV-CACVFGPRESLHKQ 63

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           ++     +            A          S+     G    +    V+  +      +
Sbjct: 64  EAKH--DKGLVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ + DG+  +A V  + LAL+DA V +   V  I  G++ +     +L D++ +E
Sbjct: 122 HIYIEVLQQDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDE----HMLIDLTSNE 177

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
                     A T      +        +  + +   L+ A+ G   +        +  R
Sbjct: 178 LRSQCPVIAAAFTGHDTRNIIWLETASRLPPDSVTRLLKCAEEGATKLFE------ATMR 231

Query: 544 LQLGEFTPRVEIMA 557
             L E   ++  + 
Sbjct: 232 KALEEHAKKILTLQ 245



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 13/209 (6%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           DG+   T G++ V A V   R     Q    D   +T       +A G+      RR   
Sbjct: 37  DGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTCEVAVAAFA-GENRRNPQRRSKL 95

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             +    + ++    I  L S+   ++  + I V+Q D      +  + AA  AL+ + +
Sbjct: 96  SEDIGAAVVQVARSVI--LLSQYPNSQIHIYIEVLQQDGNEK--IACVNAACLALIDANV 151

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS---GTQDAVLMVELEANQLSEDVV 200
                V       ++   +++   +E +    +  +   G     ++    A++L  D V
Sbjct: 152 AMRDAVCCIDAGILDEHMLIDLTSNELRSQCPVIAAAFTGHDTRNIIWLETASRLPPDSV 211

Query: 201 LDAIIFGHNECKPVIEA-ISKLAKMCAKE 228
              +         + EA + K  +  AK+
Sbjct: 212 TRLLKCAEEGATKLFEATMRKALEEHAKK 240


>gi|326478233|gb|EGE02243.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Trichophyton equinum CBS 127.97]
          Length = 1214

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 19/124 (15%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           ++G   N DDD                R  +  + D P + KIY G+V  + DFG    F
Sbjct: 219 RSGRNYNYDDDFK--------------RPPVSELDDRPILFKIYDGRVTGIKDFGVLPEF 264

Query: 640 C---GARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
               G+  GLVH+S +    RV   SD+V  G  V VK++   D  +I LSMK VDQ +G
Sbjct: 265 PFALGSTLGLVHVSAMQEGARVNHPSDLVSRGQQVKVKVVSIQDS-RIGLSMKEVDQVSG 323

Query: 696 KPIV 699
             + 
Sbjct: 324 HDLA 327


>gi|256425255|ref|YP_003125908.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040163|gb|ACU63707.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
          Length = 760

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 166/501 (33%), Gaps = 59/501 (11%)

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWN 287
           E         +  EE+ S++I +          K V     D  K+ +     +E  +  
Sbjct: 227 ESEGFLYATINPAEEDASEIINKQFVTGNNESSKQVEKAAADAYKRLLRPSLENEFRALT 286

Query: 288 EGEIVSVFEDIQAKVVRTVM------------LDKKVRMDGR-----------DSETVRD 324
           + +  +   ++ A+ +R ++            +D   R   +           D++ +  
Sbjct: 287 KEKSDAEAIEVFAENLRQLLLAAPLGPKAVIAIDPGYRTGCKVVALDNQGNMLDNDVIYP 346

Query: 325 ISAQVGLLQRTHGSSLFIRG----DTQAIVVV--TLGTREDEQYVDSLSGTQRNDFMMHY 378
           +  +    +R    +L  +     DT AI V   T G   +E       G + N FM++ 
Sbjct: 347 L--EKNY-KRDDAEALLKKWVDKYDTAAIAVGNGTAGRETEEFVKKLDFGKKVNVFMVNE 403

Query: 379 NFLP-CATGEVSRMGAPSRREIGHGRLA--RRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
           +     +  EV+R   P       G ++  RR I P+       P  + +          
Sbjct: 404 SGASVYSASEVAREEFPDFDVTVRGAVSIGRRLIDPLAELVKIDPKAIGV---------G 454

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
                V  SSL      V IS       +G+  +     +L+ +SG    L     K   
Sbjct: 455 QYQHDVNQSSLKQSLDRVVIS---CVNNVGVNLNTASKHLLAYVSGLGPSLAENIVKYRK 511

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES----RLQLGEFTP 551
            +          K+  + +            G L I N  + + + +    R  L E   
Sbjct: 512 ENGAFKNRTQLKKVTRLGDKAFEQ-----CAGFLRIENGDNPLDNSAVHPERYSLIENMA 566

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREM 609
             +   +     +  +         + E+ G     +I  +                   
Sbjct: 567 AKQSCTVQDLMAKEELRKKINAKEYVSEEVGLLTLEDILKELDKPSRDPRDEIAIFEYAE 626

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                +  +V     G V  + +FGAFV     +DGLVHIS LS   ++  ++ VK    
Sbjct: 627 GIHKMEDLKVGMTLPGVVTNITNFGAFVDIGVKQDGLVHISHLSNRFISNPNEAVKLNQK 686

Query: 670 VWVKLLDFDD-RGKIKLSMKV 689
           V V +L+ D  R +I LSMK 
Sbjct: 687 VTVTVLEVDPSRKRISLSMKD 707


>gi|146320618|ref|YP_001200329.1| 30S ribosomal protein S1 [Streptococcus suis 98HAH33]
 gi|145691424|gb|ABP91929.1| SSU ribosomal protein S1P [Streptococcus suis 98HAH33]
          Length = 349

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   KV   D+   +++ S  A           +        + +G+V ++ DFGAFV 
Sbjct: 241 EEVEVKVLAIDEVEGRVSLSLKATQP---GPWDGVEQKLVAGDVIEGKVKRLTDFGAFVE 297

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
                DGLVHISQ+S +RV    D +  G  V VK+L+ +    ++ LS+K 
Sbjct: 298 VLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVLEVNAADERVSLSIKA 349



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 575 RGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           R + ++  AK+  +D      I S       AA      +     V ++  G+V ++  F
Sbjct: 148 RFVGQEFDAKIKEVDPAENRFILSRRDVVEAAAAAARAEVFGKLAVGEVVTGKVARITSF 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           GAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D+  G++ LS+K    
Sbjct: 208 GAFIDL-GGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQP 266

Query: 693 NTG 695
              
Sbjct: 267 GPW 269


>gi|317486319|ref|ZP_07945150.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
 gi|316922430|gb|EFV43685.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
          Length = 570

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +  + IT        + G+V  ++D+GAFV      +GLVHIS++S  R +   S +V++
Sbjct: 277 DPWQDITARFPEASRHNGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRQ 336

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +L  D ++ +I L MK +  N  +
Sbjct: 337 GDEVEVVILGVDPEKKRISLGMKQIKPNPWE 367



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 11/185 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    ++    +  I+  +    +     +  F P   +   P   +  ++       
Sbjct: 108 DQLEDVQEKNGVIKGRIMRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALV------- 160

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E   ++      T      ++  G+   + ++G
Sbjct: 161 NQEYEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLQTLAE--GQVVTGKAKNITEYG 218

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S +R+    ++V  G  + +K+L FD D  K+ L +K +  +
Sbjct: 219 VFVDL-GGLDGLLHITDMSWKRIRHPREMVTLGQDLELKVLSFDKDNQKVSLGLKQLVPD 277

Query: 694 TGKPI 698
             + I
Sbjct: 278 PWQDI 282



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 99/261 (37%), Gaps = 34/261 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +  G  K+  ++ +  D+ G +   H+  M +K       +  +  D+++  +S +    
Sbjct: 206 VVTGKAKNITEYGVFVDLGGLDGLLHITDMSWKRIRHPREMVTLGQDLELKVLSFD---- 261

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 +    +   + +++ +    +    P           + +      +  G + +
Sbjct: 262 ------KDNQKVSLGLKQLVPDPWQDITARFPEASRHNGKVTNLVDYGAFVELEPGVEGL 315

Query: 575 RGIVEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV------- 619
             I E +  +        V   D+  V I      +   +  M +   +  E+       
Sbjct: 316 VHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQIKPNPWELVGEKYPE 375

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
             I +G +  + +FG F+      DGL+H+S +S  +++   +++ K GDTV  K+L  D
Sbjct: 376 GTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELFKVGDTVQAKVLTVD 435

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            +  K  L +K + ++    +
Sbjct: 436 QESEKFTLGIKQLTEDPWTNV 456



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++     V  + KG +  + DFG FV      +GLVH+S+LS ++V   +++ KEG
Sbjct: 451 DPWTNVPTAYPVGGLVKGIITNITDFGLFVEVEEGIEGLVHVSELSNKKVKTPAELYKEG 510

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + +  K++    +  ++ LS+K +     +
Sbjct: 511 EEIQAKIIHVSAEDRRLGLSIKQLKDEEER 540


>gi|126736966|ref|ZP_01752701.1| 30S ribosomal protein S1 [Roseobacter sp. SK209-2-6]
 gi|126721551|gb|EBA18254.1| 30S ribosomal protein S1 [Roseobacter sp. SK209-2-6]
          Length = 553

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGKLSEGDSV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQEDPW 266



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVDVMVLEIDGSKRRVSLGLKQTQRNPWE 354



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVI---------- 245

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++  +    +G   P   +       I +      +  G + +  +
Sbjct: 246 KINKDTHRISLGMKQLQEDPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHV 305

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +                  R       +       
Sbjct: 306 SEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGSKRRVSLGLKQTQRNPWEVFAETHPEGTE 365

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + + D D+
Sbjct: 366 VEGEVKNITEFGLFIGLEGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVSAVVSEVDVDK 425

Query: 681 GKIKLSMKVV 690
            +I LS+K +
Sbjct: 426 ERISLSIKAL 435



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSIVTVNVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 529


>gi|331082804|ref|ZP_08331926.1| hypothetical protein HMPREF0992_00850 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400133|gb|EGG79782.1| hypothetical protein HMPREF0992_00850 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 714

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKG 625
           +G+G   +R IV++             K       E+               +   + KG
Sbjct: 599 LGVGEMTLRDIVKELT-----------KPGRDPREEMPKPILRTDVLDMKDLKEGMVLKG 647

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV     +DGLVHISQ++   +    + V  GD V V +L  D  + +I 
Sbjct: 648 TVRNVIDFGAFVDIGVHQDGLVHISQMTERYIKHPLEAVSVGDVVDVMVLGVDMKKKRIS 707

Query: 685 LSMKVV 690
           L+MK +
Sbjct: 708 LTMKGI 713


>gi|229015646|ref|ZP_04172635.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1273]
 gi|228745646|gb|EEL95659.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH1273]
          Length = 655

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 130/350 (37%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   +R+ F +  N       +  +++R   P  +      ++  RR   P+ 
Sbjct: 325 EEFIVDVLQNVKRDVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLA 384

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 385 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 444

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 445 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 498

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + +  LQ            +   ++     +G   +  I+
Sbjct: 499 PEQYKNVELLLKSLGLSKNDVGKPNLQKSLEG-------VDVSKLSQETEIGEPTLVDII 551

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 552 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 601

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 602 IGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 651


>gi|163738743|ref|ZP_02146157.1| RNA binding S1 [Phaeobacter gallaeciensis BS107]
 gi|161388071|gb|EDQ12426.1| RNA binding S1 [Phaeobacter gallaeciensis BS107]
          Length = 788

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++          + + A+ +         +   + +G V  V  FGAFV     +DG
Sbjct: 615 DIFEELEKPGRDPRPSFVTASFKDGVETITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVH+SQL+   V    +VVK G  V V + + D  R +I L+MK
Sbjct: 675 LVHVSQLADRFVKDPHEVVKTGQVVKVTVTEVDVPRKRIALTMK 718


>gi|147677954|ref|YP_001212169.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Pelotomaculum thermopropionicum SI]
 gi|146274051|dbj|BAF59800.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 667

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E AR    ++  + E  ++ KG V ++  FGAFV   G  DGL+HIS+
Sbjct: 445 KVILSRKAVLEEEYARLRQETLDTLQEG-QVVKGTVRRLTQFGAFVDI-GGVDGLLHISE 502

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +S  R+   S+VVK GD + + +L  D +  KI L +K V  N    +
Sbjct: 503 MSWHRINHPSEVVKVGDELEIMVLKLDRENEKISLGLKQVLPNPWDSV 550



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S+ +   V  I K +VV++  FGAFV      +GLVHIS L+   V K  +VV EG+
Sbjct: 546 PWDSVQEKYPVGSIVKAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVVKPDEVVSEGE 605

Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690
            V VK+L  D    +I+LS++ V
Sbjct: 606 EVNVKVLSVDQAEKRIRLSIREV 628



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
             G  I G+         I ++   +++       +                +I KG VV
Sbjct: 248 FRGAKIAGLTAGASTPDWIIEEVKNRMSEIEEMNCQEEGMKEAMEVKAVRHGQIVKGTVV 307

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLS 686
            V      V      +G++ + +LS   +A   ++VK GD + V +L   D+ GK+ LS
Sbjct: 308 HVGPDEVMVDIGAKSEGVIPLRELSCCEIASPQEIVKVGDEIEVYVLKAEDNEGKLILS 366



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIM------AIPPDQIRNVIGMGGKVIRGIVE 579
           + R+  + EM+      +  +     R   +       + PD++   IG   + +  + E
Sbjct: 271 KNRMSEIEEMNCQEEGMKEAMEVKAVRHGQIVKGTVVHVGPDEVMVDIGAKSEGVIPLRE 330

Query: 580 QTGAKV------------------NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
            +  ++                    +D+    I S   A+ E A   +    +  E   
Sbjct: 331 LSCCEIASPQEIVKVGDEIEVYVLKAEDNEGKLILSKEKADAEKAWGRLEEALNSGEP-- 388

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
             +G V +V+  G  V         +  S +    V   S  +  G  V  ++++ +  R
Sbjct: 389 -VEGIVREVVKGGLLVDV--GVRAFLPASLVERGYVEDLSKYL--GQVVKARVIELNRGR 443

Query: 681 GKIKLSMKVVDQNT 694
            K+ LS K V +  
Sbjct: 444 KKVILSRKAVLEEE 457


>gi|56709090|ref|YP_165135.1| S1 RNA-binding domain-containing protein [Ruegeria pomeroyi DSS-3]
 gi|56680775|gb|AAV97440.1| S1 RNA binding domain protein [Ruegeria pomeroyi DSS-3]
          Length = 765

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 19/147 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGA------KVNIDDDGTVKIASSSLAEIEAAREMIR--- 611
           +  R ++G  G+ IR I+   GA      +  + +   +      LAE+E      R   
Sbjct: 568 EVARRIVGACGRDIRQIMGHEGALKGLRAEQFVTESFGLPTVRDILAELEKPGRDPRPSF 627

Query: 612 ---------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
                              + +G V  V  FGAFV     +DGLVH+SQL+   V    +
Sbjct: 628 VTASFADGVEDITDLRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHE 687

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           VVK G  + V + + D  R +I LSM+
Sbjct: 688 VVKTGQVIKVTVTEIDVPRKRIGLSMR 714


>gi|332287411|ref|YP_004422312.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|325506682|gb|ADZ18320.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
          Length = 501

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+NID    V      L            + + 
Sbjct: 83  QIDNKKIKNLDDYVGKVCEFKI----LKINIDRRNVVVSRRELLEA--ERISKKAELIEQ 136

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 137 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILS 195

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 196 VDKEKGRVALGLKQKEHNPWEDI 218



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 103 KILKINIDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGI 162

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 163 DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHN-----PWED 217

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K   G++VK++ +GAF+      +GL+H+S++S  + V   S+VV +GD V 
Sbjct: 218 IEKKYPPGKRITGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVE 277

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
             +L    D GKI L +K  + N    I
Sbjct: 278 AIVLSIQKDEGKISLGLKQTEHNPWDNI 305



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I ++     +  G V K+  FGAFV      +GL+H+S+LS +  +K  D++  GD
Sbjct: 388 PWNEIEEMFPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIISIGD 447

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
           +V  K++  D D  K+ LS+K 
Sbjct: 448 SVSAKVIKLDPDHKKVSLSVKE 469



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 102/249 (40%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 145 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVA 204

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +          ++ +  P    + I  + I  +I +        V
Sbjct: 205 LGLKQKEHNPWEDIEKKYPPGKRITGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNV 263

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+    + S    E + +  + ++  +  +  +         + ++  + 
Sbjct: 264 VDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVRAEIKNLT 323

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G  V   +L  D +  KI L +K 
Sbjct: 324 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQ 383

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 384 LSSNPWNEI 392



 Score = 38.7 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    +    E + I KGQ+++ +  G  V      +  +
Sbjct: 26  DEEGKVVLS---REKATRQRQWEHILAHCEEGS-IVKGQIIRKVKGGLIVDI--GMEAFL 79

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + DR  + +S + + +
Sbjct: 80  PGSQIDNKKIKNLDDYV--GKVCEFKILKINIDRRNVVVSRRELLE 123


>gi|228961152|ref|ZP_04122775.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798531|gb|EEM45521.1| RNA binding S1 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 119

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 15  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSVDEEH 74

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 75  RKMSLSLKAAKRKQGRILI 93


>gi|325107428|ref|YP_004268496.1| 30S ribosomal protein S1P [Planctomyces brasiliensis DSM 5305]
 gi|324967696|gb|ADY58474.1| SSU ribosomal protein S1P [Planctomyces brasiliensis DSM 5305]
          Length = 608

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G ++     V+IDD+  V I +    + + A       +    +I D   V     G+V
Sbjct: 250 WGRIDHPSNMVSIDDEIEVVILNVDREKEKIALGLKQKTKSPWENIGDKYPVGSRVTGEV 309

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             VM +GAFV      +GLVHIS++S   R+   S++V  GD+V V +L+ + D+ +I L
Sbjct: 310 TNVMSYGAFVRLEDGIEGLVHISEMSWTRRINHPSELVNIGDSVDVVVLNINTDKQEISL 369

Query: 686 SMKVVDQNTGKPI 698
            MK    N    +
Sbjct: 370 GMKQTQPNPWDNV 382



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  ++    P+ I + IG   + I   +++    + +        +   L E   
Sbjct: 152 VNVFLPASQVDIRRPNDIADFIGQEIECIILKIDEPRRNIVV--------SRRKLIEDRR 203

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A    + + ++ E      G V  + DFGAFV   G  DGL+HI+ +S  R+   S++V 
Sbjct: 204 AELKRKLLEELEEGQLR-TGVVKNIADFGAFVDL-GGIDGLLHITDMSWGRIDHPSNMVS 261

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             D + V +L+ D ++ KI L +K   ++  + I
Sbjct: 262 IDDEIEVVILNVDREKEKIALGLKQKTKSPWENI 295



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDD--DGTVKIASSSLAEIEAAREMIRSITDVPE 618
           D I  ++ +        +      VNI D  D  V   ++   EI    +  +       
Sbjct: 323 DGIEGLVHISEMSWTRRINHPSELVNIGDSVDVVVLNINTDKQEISLGMKQTQPNPWDNV 382

Query: 619 VNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWV 672
             K     + KG+V  + ++GAF+      DGL+H+S +S  R ++  S+++K+GD V  
Sbjct: 383 GEKYPVGAVVKGKVRNLTNYGAFIELEEGVDGLLHVSDMSWTRKISHASEMLKKGDEVEC 442

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +++  D +R +I L +K +  +     +
Sbjct: 443 QIVSVDEERRRIALGLKQLQGDPWTDTI 470



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I    ++++   E     V++D++           + +       +I D      I  G 
Sbjct: 427 ISHASEMLKKGDEVECQIVSVDEERRRIALGLKQLQGD---PWTDTIPDKYAPGTIVTGN 483

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V K+ +FG FV      +GL+H+S+L+  +V    D V  G+++ V++L  D D  KI L
Sbjct: 484 VTKITNFGVFVELEPELEGLLHVSELAAHKVNNPEDEVNVGESIEVRILRLDLDDRKIGL 543

Query: 686 SMK 688
           S +
Sbjct: 544 SRR 546


>gi|255024450|ref|ZP_05296436.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-208]
          Length = 154

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 35  PWDGIAEKAPVGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQ 94

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           TV VK+L+ ++   ++ LS+K +     + 
Sbjct: 95  TVEVKVLEVNEADKRLSLSIKELQDAPVEE 124



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 661 SDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            + ++EG  V VK++  D    +I LS+K       
Sbjct: 1   QEALEEGQKVTVKVIGIDPENERISLSIKATLPGPW 36


>gi|148543502|ref|YP_001270872.1| RNA-binding S1 domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|184152909|ref|YP_001841250.1| hypothetical protein LAR_0254 [Lactobacillus reuteri JCM 1112]
 gi|194467677|ref|ZP_03073664.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227363651|ref|ZP_03847765.1| RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|227544682|ref|ZP_03974731.1| RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300909076|ref|ZP_07126539.1| S1 RNA-binding domain protein [Lactobacillus reuteri SD2112]
 gi|325681846|ref|ZP_08161365.1| S1 RNA-binding domain protein [Lactobacillus reuteri MM4-1A]
 gi|148530536|gb|ABQ82535.1| RNA binding S1 domain protein [Lactobacillus reuteri DSM 20016]
 gi|183224253|dbj|BAG24770.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|194454713|gb|EDX43610.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227071320|gb|EEI09629.1| RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|227185328|gb|EEI65399.1| RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300894483|gb|EFK87841.1| S1 RNA-binding domain protein [Lactobacillus reuteri SD2112]
 gi|324978937|gb|EGC15885.1| S1 RNA-binding domain protein [Lactobacillus reuteri MM4-1A]
          Length = 164

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 40/72 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHISQ+S + +    DV+  GD V  K+   
Sbjct: 4   EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDEVTAKVTRI 63

Query: 678 DDRGKIKLSMKV 689
            D GKI LS+K 
Sbjct: 64  GDDGKIALSIKA 75


>gi|294054698|ref|YP_003548356.1| Tex-like protein protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614031|gb|ADE54186.1| Tex-like protein protein [Coraliomargarita akajimensis DSM 45221]
          Length = 758

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+SQL+ + V   + +VK GD V V + + D  R +I
Sbjct: 645 GIVTNVTAFGAFVDVGVHQDGLVHVSQLADKFVEDPNQIVKVGDKVQVTVTELDLQRNRI 704

Query: 684 KLSMKVVDQNTGK 696
            LSM+   +  GK
Sbjct: 705 SLSMRARPEIGGK 717


>gi|251779026|ref|ZP_04821946.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083341|gb|EES49231.1| putative 30S ribosomal protein S1 [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 378

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E     T+  +   I+ G+VVK   FGAFV      +GLVHIS+++ E +AK SDV++ 
Sbjct: 265 KEPWTLHTNEIKSGMIFDGKVVKFASFGAFVEIFDGVEGLVHISEITDENIAKPSDVLEL 324

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
              V VK+LDF+  G ++ LS+K   + + +
Sbjct: 325 NQKVKVKVLDFNKEGKRLSLSIKDAVETSKE 355



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + +D      +AS    E E   +  + I D  +  +   G V K++ +GAFV
Sbjct: 151 TELEVRIIELDFRNNKIVASRKAIENEEYEKNRKVIWDSLKEGEKRTGIVKKLVKYGAFV 210

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  +GL+HIS LS  RV +  ++VKE D V V +   D +  K+ L +K +++   
Sbjct: 211 DI-GGVEGLIHISDLSWNRVNRPEEIVKENDKVEVYIGSVDRENQKLSLVLKDINKEPW 268



 Score = 41.4 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                      +I KG+V++V +    V+   A DGL+   ++S +      DV+K  D 
Sbjct: 11  EEYDVKRINKGQILKGKVLEVNEKEVVVNINYAFDGLIAKEEVSIDD-KNPMDVLKVDDE 69

Query: 670 VWVKLLDF-DDRGKIKLSM-KVV 690
           + V ++   D  G ++LS+ K +
Sbjct: 70  IDVYVVSPNDGEGYVELSLIKAL 92


>gi|50812188|ref|NP_388359.2| RNA helicase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308302|ref|ZP_03590149.1| hypothetical protein Bsubs1_02703 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312624|ref|ZP_03594429.1| hypothetical protein BsubsN3_02679 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317547|ref|ZP_03598841.1| hypothetical protein BsubsJ_02638 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321823|ref|ZP_03603117.1| hypothetical protein BsubsS_02709 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81341845|sp|O31489|YDCI_BACSU RecName: Full=Uncharacterized protein ydcI
 gi|32468703|emb|CAB12285.2| putative RNA helicase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 719

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 131/358 (36%), Gaps = 53/358 (14%)

Query: 356 TREDEQ-YVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ  V+ L    R  + +  N       +  E++R   P  +      +  ARR  
Sbjct: 387 SRETEQFIVNVLRDMPRKIYYVIVNEAGASVYSASELAREEFPDLKVEERSAVSIARRLQ 446

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 447 DPLAELVKIDPKSVGVGQYQHDVSQKRLNESLRFVVETVVNQVGVNVNTASAALLQYVAG 506

Query: 455 ISKPVAGIAMGLVKDGDDFII---LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           +SK VAG  +   ++   F     L DI                   G       +   G
Sbjct: 507 LSKSVAGNVVKKREEIGKFSNRKELKDIPRLGAKTYEQCIGFLRVQEG----TEPLDRTG 562

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I            K+  L   +  +  L +   QL               +    +G+G 
Sbjct: 563 IHPESYKETKALLKKLGLSTEHIGTAELKDKINQLAL------------SETAKELGIGE 610

Query: 572 KVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             ++ I EQ T  + +  D     +  + + ++E  +E +             +G V  V
Sbjct: 611 ITLKDICEQLTRPERDPRDKVPKPLLKTDVLQLEDLKEGME-----------LQGTVRNV 659

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +DFGAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ LSM
Sbjct: 660 VDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSM 717


>gi|1881289|dbj|BAA19316.1| ydcJ [Bacillus subtilis]
          Length = 123

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G   ++ I EQ T  + +  D     +  + + ++E  +E +             +G
Sbjct: 10  LGIGEITLKDICEQLTRPERDPRDKVPKPLLKTDVLQLEDLKEGME-----------LQG 58

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ 
Sbjct: 59  TVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVDGVDVQKGRVS 118

Query: 685 LSM 687
           LSM
Sbjct: 119 LSM 121


>gi|312623023|ref|YP_004024636.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203490|gb|ADQ46817.1| RNA binding S1 domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 120

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  +I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++ 
Sbjct: 4   KRGQILEGIVKGITQFGAFVELPSGKVGLVHISEVAYEYVEDIKKYLKENQTVKVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            + GKI LS+K V++   + 
Sbjct: 64  KEDGKISLSIKRVNETAKRE 83


>gi|154684978|ref|YP_001420139.1| YdcI [Bacillus amyloliquefaciens FZB42]
 gi|154350829|gb|ABS72908.1| YdcI [Bacillus amyloliquefaciens FZB42]
          Length = 719

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 133/355 (37%), Gaps = 47/355 (13%)

Query: 356 TREDEQ-YVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ  VD L  T+R+ + +  N       +  E++R   P  +      +  ARR  
Sbjct: 387 SRETEQFVVDVLKETERDIYYVIVNEAGASVYSASEIAREEFPDFQVEERSAVSIARRLQ 446

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 447 DPLAELVKIDPKSVGVGQYQHDVSQKQLNESLRFVVETVVNQVGVNVNTASAALLQYVAG 506

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +SK VAG  +   ++   F    ++            +  G    +   Q  +   GI  
Sbjct: 507 LSKTVAGNIVKKREELGKFTNRKELKEIPRLGAKTYEQCIGFLR-VPGGQEPLDRTGIHP 565

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
                     K+ +L      S    E    L            P  +    +G+G   +
Sbjct: 566 ESYKETKALLKKLQLTADQIGSADAKEKISAL------------PLSETAEELGIGEITL 613

Query: 575 RGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
             I  Q T  + +  D+    +    + ++E  +E +             +G V  V+DF
Sbjct: 614 ADICGQLTRPERDPRDEVPKPLLKKDVLQLEDLKEGME-----------LQGTVRNVVDF 662

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           GAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ LSM
Sbjct: 663 GAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDVQKGRVSLSM 717


>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
          Length = 543

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +N+D +      S   A+     +   +I D   VN +  G+V  ++  GAFV      +
Sbjct: 328 INVDKENRKLTLSYKKAKG----DPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVE 383

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           G V +S++S +R+ +  +++K G+ V VK+L  D   + I LS+K   +N  +
Sbjct: 384 GFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWE 436



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 538 VLSESRLQLGEFTPRV---EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           V  E    +  F PR        I P+   +++  G  +   I+E         D     
Sbjct: 201 VEVEISEGVRGFIPRSELSYDTRISPE---DIVKPGQNITAKIIEL--------DKEKKN 249

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  S    +    +    + +   V K+  G+V+ +  FG FV      +GLV  S++  
Sbjct: 250 VILSLKRLMP---DPWEKVEEKYPVGKVVNGEVISIHPFGFFVRLEPGVEGLVPRSEVFW 306

Query: 655 ERVAKT-SDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
               K+  +VV  GD V V++++ D   + + LS K    +  + I
Sbjct: 307 GNTRKSLEEVVSAGDLVKVEVINVDKENRKLTLSYKKAKGDPWENI 352



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + I       +V  I +G V  + + G  V       G +  S+LS +      D+VK G
Sbjct: 174 KKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIVKPG 233

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
             +  K+++ D   K + LS+K +  +  + +
Sbjct: 234 QNITAKIIELDKEKKNVILSLKRLMPDPWEKV 265


>gi|157827436|ref|YP_001496500.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
 gi|157802740|gb|ABV79463.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
          Length = 572

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V   +        AR+ + S         I +G V  + D+GAF+   G+ DGL+H++ +
Sbjct: 184 VSRRAILEESRSEARDEMLSKIKE---GMILEGTVKNITDYGAFIDL-GSVDGLLHLTDI 239

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           S  RV   S+V++    V V ++ F++   +I L MK +D N  + I
Sbjct: 240 SWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKI 286



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 282 PWEKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   QN 
Sbjct: 342 QEVEFMVLEVDTEKHRVSLSIKQCQQNP 369



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  + K  +  + DFG FV      DG++H   ++ E      +++   K+GD V  K+L
Sbjct: 379 VGTVIKAPIRNITDFGIFVALSDNLDGMIHEGDITWEYNGN--ELLKTYKKGDEVECKVL 436

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             + ++ +I L +K +  N 
Sbjct: 437 TINIEKEQISLGIKQLTPNP 456



 Score = 45.3 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + I D  +   + K  V  + D G  V       G +  S LS E+  +  ++     
Sbjct: 456 PYQGIADEYKKGTVVKAVVTAIKDDGLEVLVNDKAAGFIKKSDLSDEKEEQKPEMFAVDQ 515

Query: 669 TVWVKLLDFDDR-GKIKLSMKV 689
            +  K+   +    KI LS+K 
Sbjct: 516 EIEAKVASIEKSTNKILLSIKA 537


>gi|29374903|ref|NP_814056.1| hypothetical protein EF0262 [Enterococcus faecalis V583]
 gi|227555908|ref|ZP_03985955.1| RNA-binding protein [Enterococcus faecalis HH22]
 gi|229546908|ref|ZP_04435633.1| RNA-binding protein [Enterococcus faecalis TX1322]
 gi|229550497|ref|ZP_04439222.1| RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|255971762|ref|ZP_05422348.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255974762|ref|ZP_05425348.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256618327|ref|ZP_05475173.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256762057|ref|ZP_05502637.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
 gi|256855216|ref|ZP_05560577.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256956809|ref|ZP_05560980.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256960615|ref|ZP_05564786.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|256964185|ref|ZP_05568356.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|257078479|ref|ZP_05572840.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|257081550|ref|ZP_05575911.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|257088025|ref|ZP_05582386.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|257088702|ref|ZP_05583063.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|257417628|ref|ZP_05594622.1| RNA binding protein S1 [Enterococcus faecalis AR01/DG]
 gi|257418647|ref|ZP_05595641.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|257421551|ref|ZP_05598541.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|293382702|ref|ZP_06628627.1| S1 RNA-binding domain protein [Enterococcus faecalis R712]
 gi|293388116|ref|ZP_06632643.1| S1 RNA-binding domain protein [Enterococcus faecalis S613]
 gi|294779312|ref|ZP_06744715.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|300862238|ref|ZP_07108318.1| S1 RNA binding domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|307268515|ref|ZP_07549890.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|307274226|ref|ZP_07555434.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|307276451|ref|ZP_07557574.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|307278661|ref|ZP_07559731.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|307286959|ref|ZP_07567034.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|307290192|ref|ZP_07570110.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|312901066|ref|ZP_07760355.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
 gi|312904629|ref|ZP_07763784.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|312908598|ref|ZP_07767540.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|312909254|ref|ZP_07768111.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
 gi|312952662|ref|ZP_07771526.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|29342361|gb|AAO80127.1| S1 RNA-binding domain protein [Enterococcus faecalis V583]
 gi|227174965|gb|EEI55937.1| RNA-binding protein [Enterococcus faecalis HH22]
 gi|229304354|gb|EEN70350.1| RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|229307836|gb|EEN73823.1| RNA-binding protein [Enterococcus faecalis TX1322]
 gi|255962780|gb|EET95256.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255967634|gb|EET98256.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256597854|gb|EEU17030.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256683308|gb|EEU23003.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
 gi|256709729|gb|EEU24776.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256947305|gb|EEU63937.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256951111|gb|EEU67743.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|256954681|gb|EEU71313.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|256986509|gb|EEU73811.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|256989580|gb|EEU76882.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|256996055|gb|EEU83357.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|256997514|gb|EEU84034.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|257159456|gb|EEU89416.1| RNA binding protein S1 [Enterococcus faecalis ARO1/DG]
 gi|257160475|gb|EEU90435.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|257163375|gb|EEU93335.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|291079862|gb|EFE17226.1| S1 RNA-binding domain protein [Enterococcus faecalis R712]
 gi|291082492|gb|EFE19455.1| S1 RNA-binding domain protein [Enterococcus faecalis S613]
 gi|294453598|gb|EFG21997.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|295112547|emb|CBL31184.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Enterococcus sp. 7L76]
 gi|300848763|gb|EFK76520.1| S1 RNA binding domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|306498748|gb|EFM68247.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|306501905|gb|EFM71194.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|306504721|gb|EFM73921.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|306506931|gb|EFM76078.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|306509188|gb|EFM78250.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|306515176|gb|EFM83716.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|310625385|gb|EFQ08668.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|310629450|gb|EFQ12733.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|310631981|gb|EFQ15264.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|311290496|gb|EFQ69052.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
 gi|311291812|gb|EFQ70368.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
 gi|315026780|gb|EFT38712.1| S1 RNA binding domain protein [Enterococcus faecalis TX2137]
 gi|315028819|gb|EFT40751.1| S1 RNA binding domain protein [Enterococcus faecalis TX4000]
 gi|315032982|gb|EFT44914.1| S1 RNA binding domain protein [Enterococcus faecalis TX0017]
 gi|315036605|gb|EFT48537.1| S1 RNA binding domain protein [Enterococcus faecalis TX0027]
 gi|315145392|gb|EFT89408.1| S1 RNA binding domain protein [Enterococcus faecalis TX2141]
 gi|315147116|gb|EFT91132.1| S1 RNA binding domain protein [Enterococcus faecalis TX4244]
 gi|315151131|gb|EFT95147.1| S1 RNA binding domain protein [Enterococcus faecalis TX0012]
 gi|315153554|gb|EFT97570.1| S1 RNA binding domain protein [Enterococcus faecalis TX0031]
 gi|315156266|gb|EFU00283.1| S1 RNA binding domain protein [Enterococcus faecalis TX0043]
 gi|315158589|gb|EFU02606.1| S1 RNA binding domain protein [Enterococcus faecalis TX0312]
 gi|315160782|gb|EFU04799.1| S1 RNA binding domain protein [Enterococcus faecalis TX0645]
 gi|315165846|gb|EFU09863.1| S1 RNA binding domain protein [Enterococcus faecalis TX1302]
 gi|315168155|gb|EFU12172.1| S1 RNA binding domain protein [Enterococcus faecalis TX1341]
 gi|315171405|gb|EFU15422.1| S1 RNA binding domain protein [Enterococcus faecalis TX1342]
 gi|315573570|gb|EFU85761.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309B]
 gi|315579381|gb|EFU91572.1| S1 RNA binding domain protein [Enterococcus faecalis TX0630]
 gi|315582082|gb|EFU94273.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309A]
 gi|323479475|gb|ADX78914.1| S1 RNA binding domain protein [Enterococcus faecalis 62]
 gi|327534059|gb|AEA92893.1| S1 RNA-binding domain protein [Enterococcus faecalis OG1RF]
          Length = 159

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
            D GKI LS++   +  
Sbjct: 64  GDDGKIGLSIRKAQEPA 80


>gi|325661147|ref|ZP_08149774.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085098|ref|ZP_08334184.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472654|gb|EGC75865.1| hypothetical protein HMPREF0490_00507 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407881|gb|EGG87371.1| hypothetical protein HMPREF0987_00487 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 360

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   LS    +   F P      +     +++    G+ I
Sbjct: 98  ERLREAYENKEVLKATVAQILGGGLSVVVDEARVFIPASL---VSDSYEKDLSKYEGQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N        I       +    E+ + +    +V    +G V  V DFG
Sbjct: 155 EFVISEFNPRRN------RVIGDRRQLLVAEKAELQKELFAKLKVGDTVEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V + GD V V + D +D  KI LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVENPKKVFQVGDQVKVLVKDINDT-KIALSLKFPESNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             G+V ++ DFGAFV      D L+H+SQ+S   V K SDV+  G  +  +++D ++   
Sbjct: 280 VTGKVARMTDFGAFVELAPGVDALLHVSQISKAHVEKPSDVLSVGQEIVARVVDLNEAEK 339

Query: 682 KIKLSMKVV 690
           KI LSMK +
Sbjct: 340 KISLSMKAL 348



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  S+ + E     + VV  G
Sbjct: 8   QMLEESFKTIRNGEVVEGTVIDVKPDEIILNIGCKADGIITRSEYTNEPNVDLTTVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D + VK+L   D  G++ L+ K +    G
Sbjct: 68  DPMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|313607931|gb|EFR84071.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL F2-208]
          Length = 443

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 324 PWDGIAEKAPVGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQ 383

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           TV VK+L+ ++   ++ LS+K +     + 
Sbjct: 384 TVEVKVLEVNEADKRLSLSIKELKDAPVEE 413



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + +     G  +   V +        ++  V ++  ++ E E A +    ++++ E  
Sbjct: 197 HFVEDFADYKGTTLTFKVVEFEP-----ENNRVILSHRAVVETEKASQKQALLSEIKEG- 250

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G V ++ +FGAFV   G  DGLVHISQ+S + +A   + ++EG  V VK++  D  
Sbjct: 251 DVIEGTVQRLANFGAFVDI-GGVDGLVHISQISYKHIATPQEALEEGQKVTVKVIGIDPE 309

Query: 681 G-KIKLSMKVVDQNTG 695
             +I LS+K       
Sbjct: 310 NERISLSIKATLPGPW 325



 Score = 44.5 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 76  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 135

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 136 VEDDVLV-LSKRKVDAE 151


>gi|224476595|ref|YP_002634201.1| 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421202|emb|CAL28016.1| putative 30S ribosomal protein S1 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 392

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+V+   VE+         +  V ++  ++ +     +    ++ + 
Sbjct: 138 ISTDFIEDFSSFDGQVLELRVEELDPA-----NNRVILSRKAVEQERNEAKKAELLSSLS 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + +G + ++ +FGAFV   G  DGLVH+S+LS E V K  DVV  GD V VK+   
Sbjct: 193 EG-DVIEGTIARLTNFGAFVDI-GGVDGLVHVSELSHEHVDKPEDVVSVGDKVNVKVKSV 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           + D  +I LS+K    +  + I
Sbjct: 251 EQDSERISLSIKDTLPSPFESI 272



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 559 PPDQIRNVIGMGGKVIRGI--VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
             D+  +V+ +G KV   +  VEQ   ++++    T+     S+     A          
Sbjct: 229 HVDKPEDVVSVGDKVNVKVKSVEQDSERISLSIKDTLPSPFESIKGQIHA---------- 278

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
              + I +G+VV++ DFGAFV       GLVHIS++S + +   S+V++    V VK+L 
Sbjct: 279 ---DSIIEGRVVRLTDFGAFVEIAAGVQGLVHISEISRKHIGTPSEVLEPNQEVTVKVLS 335

Query: 677 FDDR-GKIKLSMKVVDQNT 694
            D+   +I LS+K      
Sbjct: 336 IDEESERISLSIKAALPEE 354



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      GQV KV D    V   G +  G+V ISQLST  +   ++VVKE
Sbjct: 4   EFNESMINEIKEGDKISGQVQKVEDKQVIVDVDGGKFSGIVPISQLSTHHIDSPNEVVKE 63

Query: 667 GDTV-----WVKLLDFDDRGKIKLSMKVVDQN 693
           GD V      V++ + ++ G   LS++ ++Q 
Sbjct: 64  GDAVEAYVTKVEVDEENESGAYILSIRQLEQE 95


>gi|110799693|ref|YP_696828.1| 30S ribosomal protein S1 [Clostridium perfringens ATCC 13124]
 gi|168208852|ref|ZP_02634477.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC
           3626]
 gi|168215777|ref|ZP_02641402.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239]
 gi|110674340|gb|ABG83327.1| ribosomal protein S1 family [Clostridium perfringens ATCC 13124]
 gi|170713092|gb|EDT25274.1| ribosomal protein S1 family [Clostridium perfringens B str. ATCC
           3626]
 gi|182382017|gb|EDT79496.1| ribosomal protein S1 family [Clostridium perfringens NCTC 8239]
          Length = 378

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +  A ++ K  ++ +   +   +      L  F P  +      + +  ++G   +V
Sbjct: 98  WDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGRRIENLEELVGKTLEV 157

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                      +  + +    + S  + + E      +++    +  +  KG+V ++  F
Sbjct: 158 ---------RVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKF 208

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +I LS+K V +
Sbjct: 209 GAFVDI-GGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIK 267

Query: 693 NTGKPI 698
           N  + +
Sbjct: 268 NPWETL 273



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 21/197 (10%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE- 579
           ++  K  R  +++           +       ++       ++  +   G  V  G VE 
Sbjct: 160 IEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKFGAFVDIGGVEG 219

Query: 580 -------------QTGAKVNIDDDGTVKIASSSLAEIEAA------REMIRSITDVPEVN 620
                        +    V++ D+  V ++   +     A       +      +  +V 
Sbjct: 220 LVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIKNPWETLEGLKVG 279

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ DD 
Sbjct: 280 DVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNIDDE 339

Query: 680 RGKIKLSMKVVDQNTGK 696
             K+ LS+K   + + +
Sbjct: 340 NKKMSLSIKDAVETSNE 356


>gi|254520533|ref|ZP_05132589.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914282|gb|EEH99483.1| RNA binding S1 domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 136

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G VV +  FGAFV   G + GLVHIS+++   V      + E D V VK++  DD G
Sbjct: 8   ILEGTVVNITSFGAFVEIEG-KTGLVHISEVADSFVKDIRQHLNEQDKVKVKVISIDDNG 66

Query: 682 KIKLSMKV--VDQNTGKPI 698
           KI LS+K   V + + KPI
Sbjct: 67  KISLSIKQANVQKKSVKPI 85


>gi|168212813|ref|ZP_02638438.1| ribosomal protein S1 family [Clostridium perfringens CPE str.
           F4969]
 gi|170715502|gb|EDT27684.1| ribosomal protein S1 family [Clostridium perfringens CPE str.
           F4969]
          Length = 378

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +  A ++ K  ++ +   +   +      L  F P  +      + +  ++G   +V
Sbjct: 98  WDDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGRRIENLEELVGKTLEV 157

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                      +  + +    + S  + + E      +++    +  +  KG+V ++  F
Sbjct: 158 ---------RVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKF 208

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +I LS+K V +
Sbjct: 209 GAFVDI-GGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDIDRERIALSLKDVIK 267

Query: 693 NTGKPI 698
           N  + +
Sbjct: 268 NPWETL 273



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             +   V+ +G +     VE   ++V+ID +            ++   +      +  +V
Sbjct: 231 VHKPEEVVSVGDE-----VEVFVSEVDIDRE-------RIALSLKDVIKNPWETLEGLKV 278

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             +  G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ DD
Sbjct: 279 GDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNIDD 338

Query: 680 -RGKIKLSMKVVDQNTGK 696
              K+ LS+K   + + +
Sbjct: 339 ENKKMSLSIKDAVETSNE 356


>gi|91202978|emb|CAJ72617.1| strongly similar to 30S ribosomal protein S1 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 584

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +I   PP  I   +G          E T   + ID++    + S      E 
Sbjct: 154 VPIFLPASQIDVKPPGDIAQYVG---------QELTCRILKIDEERQNIVVSRRKLIEEE 204

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             +  + +    E  +  KG V  + DFGAF+   G  DGL+HI+ +S  R++  S+++ 
Sbjct: 205 REKKKKLLLMEIEAGQTRKGVVKNIADFGAFIDLGGM-DGLLHITDMSWGRISHPSEMLA 263

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             D V VK+LD D ++ K+ L +K    N  
Sbjct: 264 IDDEVEVKILDVDKEKEKVALGLKQKTDNPW 294



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 17/150 (11%)

Query: 566 VIGMGGKV-IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIEAA-------REMI 610
            I +GG   +  I + +  +++       IDD+  VKI      + + A           
Sbjct: 235 FIDLGGMDGLLHITDMSWGRISHPSEMLAIDDEVEVKILDVDKEKEKVALGLKQKTDNPW 294

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDT 669
            +I +   V    KGQVV +M +GAFV      +GLVHIS++S   R+   S++V  GD 
Sbjct: 295 FNIEEKYPVGSRVKGQVVNIMSYGAFVKLETGIEGLVHISEMSWTRRINHPSEIVAIGDM 354

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           V V +L  D ++ +I LS+K  + N    I
Sbjct: 355 VEVVVLKIDREKEEISLSIKQTEVNPWTII 384



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
              + I +  +V  I KG V K+ +FGAF+      +GL+H+S+ S ++++  +D V  G
Sbjct: 467 PWEKEIPEKYKVGDIVKGHVTKLANFGAFLELGQGIEGLLHVSEFSDKKISNPADAVNVG 526

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           D + VK++  +    KI LS+K +  +  +
Sbjct: 527 DELEVKVIRIEPEARKIGLSLKKIAAHPEE 556


>gi|46581552|ref|YP_012360.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601286|ref|YP_965686.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|46450974|gb|AAS97620.1| ribosomal protein S1 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561515|gb|ABM27259.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311235196|gb|ADP88050.1| ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  ++D+GAFV      +GLVHIS++S  R +   S +V+ GD V V +L  D D+ 
Sbjct: 297 QGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKK 356

Query: 682 KIKLSMKVVDQNTGK 696
           +I L MK V  N  +
Sbjct: 357 RISLGMKQVKPNPWE 371



 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    ++    +  I+  +    +     +  F P   +   P   +  ++       
Sbjct: 112 DQLEEVQEKNGVIKGRIVRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALV------- 164

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E   ++      T   E  ++ KG+   + ++G
Sbjct: 165 NQEYEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLRT--LEEGQVVKGKAKNITEYG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S +R+    ++V  G  + +K+L FD D  K+ L MK +  +
Sbjct: 223 VFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKVLSFDRDSQKVSLGMKQLVAD 281

Query: 694 TGKPI 698
             + I
Sbjct: 282 PWQDI 286



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    +     V  +  G V  + DFG FV      +GLVH+S++S +++   S++ K
Sbjct: 453 AEDPWSRVPATYPVGTLVTGSVTNITDFGLFVEVEEGIEGLVHVSEISQKKIKSPSEIYK 512

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           EG  +  K++    +  ++ LS+K +     +
Sbjct: 513 EGQEIQAKVIHVSAEERRLGLSIKQLKDEEER 544



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      I +G +  + +FG F+      DGL+H+S +S  +++   +++ K G
Sbjct: 369 PWEVVAEKYPEGTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVG 428

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V  K+L  D +  K  L +K + ++  
Sbjct: 429 DVVQAKVLTVDQENEKFTLGVKQLAEDPW 457


>gi|56421462|ref|YP_148780.1| general stress protein 13 [Geobacillus kaustophilus HTA426]
 gi|56381304|dbj|BAD77212.1| polyribonucleotide nucleotidyltransferase [Geobacillus kaustophilus
           HTA426]
          Length = 121

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I KG+V  +  +GAFV       GL+HIS++S + V    D V  GD V VK+LD D + 
Sbjct: 9   IVKGKVTGIQPYGAFVQLEDGMQGLIHISEISHQFVKDVRDYVHVGDEVTVKVLDVDRKA 68

Query: 681 GKIKLSMKVVDQNTGKP 697
            +  LS+K ++    K 
Sbjct: 69  RRASLSLKALEPAEEKE 85


>gi|312114916|ref|YP_004012512.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220045|gb|ADP71413.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 778

 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAF+     +DGL H+S LS   V    DVVK GD V VK+L+ 
Sbjct: 652 KPGMVLEGVVTNVAAFGAFIDIGVHQDGLAHVSALSKTFVKDPRDVVKPGDVVRVKVLEV 711

Query: 678 D-DRGKIKLSMKVVDQ 692
           D  R +I L++++ D 
Sbjct: 712 DAPRKRISLTLRLDDP 727


>gi|158321651|ref|YP_001514158.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158141850|gb|ABW20162.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 142

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I  G V  + +FGAF+     + GLVHIS+++ + V    D +K    V VK+L  
Sbjct: 4   QVGAILDGTVSGITNFGAFIDLGEGKTGLVHISEVADDYVKNIHDYLKTQQKVKVKVLSI 63

Query: 678 DDRGKIKLSMKV 689
           +D GKI LS+K 
Sbjct: 64  EDNGKISLSIKQ 75


>gi|218528803|ref|YP_002419619.1| RNA binding S1 domain protein [Methylobacterium chloromethanicum
           CM4]
 gi|218521106|gb|ACK81691.1| RNA binding S1 domain protein [Methylobacterium chloromethanicum
           CM4]
          Length = 771

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  
Sbjct: 649 KPGMQLEGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSI 708

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D  R +I LSM++ D   G
Sbjct: 709 DVPRKRIALSMRLDDPLEG 727


>gi|308172343|ref|YP_003919048.1| RNA binding protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605207|emb|CBI41578.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
           [Bacillus amyloliquefaciens DSM 7]
          Length = 719

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 133/355 (37%), Gaps = 47/355 (13%)

Query: 356 TREDEQ-YVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ  VD L  T+R+ + +  N       +  E++R   P  +      +  ARR  
Sbjct: 387 SRETEQFIVDVLKETERDIYYVIVNEAGASVYSASEIAREEFPDFQVEERSAVSIARRLQ 446

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 447 DPLAELVKIDPKSVGVGQYQHDVSQKHLNESLRFVVETVVNQVGVNVNTASAALLQYVAG 506

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +SK VAG  +   ++   F    ++            +  G    +   Q  +   GI  
Sbjct: 507 LSKTVAGNIVKKREELGKFTNRKELKEIPRLGAKTYEQCIGFLR-VPEGQEPLDRTGIHP 565

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
                     K+  L      S  + E    L            P  +    +G+G   +
Sbjct: 566 ESYKETKALLKKLHLTADQIGSADVKEKISAL------------PLSETAEELGIGDITL 613

Query: 575 RGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
             I  Q T  + +  D+    +    + ++E  +E +             +G V  V+DF
Sbjct: 614 ADICGQLTRPERDPRDEVPKPLLKKDVLQLEDLKEGME-----------LQGTVRNVVDF 662

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           GAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ LSM
Sbjct: 663 GAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDVQKGRVSLSM 717


>gi|91205227|ref|YP_537582.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
 gi|123388135|sp|Q1RJH1|RS1_RICBR RecName: Full=30S ribosomal protein S1
 gi|91068771|gb|ABE04493.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
          Length = 572

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V   +        AR+ + S         I +G V  + D+GAF+   G+ DGL+H++ +
Sbjct: 184 VSRRAILEESRSEARDEMLSKIKE---GMILEGTVKNITDYGAFIDL-GSVDGLLHLTDI 239

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           S  RV   S+V++    V V ++ F++   +I L MK +D N  + I
Sbjct: 240 SWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKI 286



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 282 PWEKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   QN 
Sbjct: 342 QEVEFMVLEVDTEKHRVSLSIKQCQQNP 369



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  + K  +  + DFG FV      DG++H   ++ E     ++++   K+GD V  K+L
Sbjct: 379 VGTVIKAPIRNITDFGIFVALSDNLDGMIHEGDITWE--DNGNELLKTYKKGDEVECKVL 436

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             + ++ +I L +K +  N 
Sbjct: 437 TINIEKEQISLGIKQLTPNP 456



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + I D  +   + K  V  + D G  V       G +  S LS E+  +  ++     
Sbjct: 456 PYQGIADEYKKGTVVKAVVTAIKDDGLEVLVNDKAAGFIKKSDLSDEKEEQKPEMFAVDQ 515

Query: 669 TVWVKLLDFDDR-GKIKLSMKV 689
            +  K+   +    KI LS+K 
Sbjct: 516 EIEAKVASIEKSTNKILLSIKA 537


>gi|328552155|gb|AEB22647.1| RNA binding protein containing S1 RNA binding domain,YdcI [Bacillus
           amyloliquefaciens TA208]
 gi|328910428|gb|AEB62024.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
           [Bacillus amyloliquefaciens LL3]
          Length = 719

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 133/355 (37%), Gaps = 47/355 (13%)

Query: 356 TREDEQ-YVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ  VD L  T+R+ + +  N       +  E++R   P  +      +  ARR  
Sbjct: 387 SRETEQFIVDVLKETERDIYYVIVNEAGASVYSASEIAREEFPDFQVEERSAVSIARRLQ 446

Query: 410 HPVLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +      VS+         + E+  +     V  +S AL+     
Sbjct: 447 DPLAELVKIDPKSVGVGQYQHDVSQKHLNESLRFVVETVVNQVGVNVNTASAALLQYVAG 506

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +SK VAG  +   ++   F    ++            +  G    +   Q  +   GI  
Sbjct: 507 LSKTVAGNIVKKREELGKFTNRKELKEIPRLGAKTYEQCIGFLR-VPEGQEPLDRTGIHP 565

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
                     K+  L      S  + E    L            P  +    +G+G   +
Sbjct: 566 ESYKETKALLKKLHLTADQIGSADVKEKISAL------------PLSETAEELGIGDITL 613

Query: 575 RGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
             I  Q T  + +  D+    +    + ++E  +E +             +G V  V+DF
Sbjct: 614 ADICGQLTRPERDPRDEVPKPLLKKDVLQLEDLKEGME-----------LQGTVRNVVDF 662

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           GAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ LSM
Sbjct: 663 GAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDVQKGRVSLSM 717


>gi|328545800|ref|YP_004305909.1| 30S ribosomal protein S1 [polymorphum gilvum SL003B-26A1]
 gi|326415540|gb|ADZ72603.1| 30S ribosomal protein S1 [Polymorphum gilvum SL003B-26A1]
          Length = 566

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++   + E   A +    +  + E   + +G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRVVLEETRAEQRSELVQSLEEGQTV-EGVVKNITDYGAFVDL-GGIDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  R+   S+V+  G TV V+++  + D  +I L MK ++ +  
Sbjct: 228 DIAWRRINHPSEVLSIGQTVRVQIIRVNQDTHRISLGMKQLETDPW 273



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           + G+V  + D+GAFV      +GL+H+S++S  ++      +V     V V +L+ D  +
Sbjct: 286 FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVDVMVLEVDPVK 345

Query: 681 GKIKLSMKVVDQNTG 695
            +I L +K   QN  
Sbjct: 346 RRISLGLKQTLQNPW 360



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +   V    +G+V    +FG F+   G  DG+VH+S L   R   +  +  K
Sbjct: 357 QNPWDAFAERFPVGTEVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFK 416

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   +LD D D+ +I L +K +  + 
Sbjct: 417 KGDVVKAVVLDVDVDKERISLGIKQLGGDP 446



 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           I   +V++V D G  V          V  + LS ER  +  +    GD    ++  FD +
Sbjct: 461 IVTCEVIEVKDGGLEVKIADSDLTAFVRRADLSRERAEQRPERFAIGDKFDARVTQFDKK 520

Query: 681 -GKIKLSMKVVDQNTGKPIV 699
             ++ +S+K ++    K  V
Sbjct: 521 TRRVSVSIKALEIAEEKEAV 540


>gi|84489719|ref|YP_447951.1| transcriptional accessory protein [Methanosphaera stadtmanae DSM
           3091]
 gi|84373038|gb|ABC57308.1| predicted transcriptional accessory protein [Methanosphaera
           stadtmanae DSM 3091]
          Length = 717

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
               +I D+                        +  E   I +G V  V+DFGAFV    
Sbjct: 608 WTLRDIIDELRKPGRDPREKLDAPQLRSDVIDIEDLEEGMILEGVVRNVVDFGAFVDIGV 667

Query: 642 ARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +DGLVHIS+L   + V    D+V  GD V V++L  D +R +I LSM
Sbjct: 668 HQDGLVHISELIEDKFVRHPMDIVNVGDIVEVRVLSVDIERSRISLSM 715


>gi|255283228|ref|ZP_05347783.1| protein YhgF [Bryantella formatexigens DSM 14469]
 gi|255266301|gb|EET59506.1| protein YhgF [Bryantella formatexigens DSM 14469]
          Length = 724

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   +G+G   +R IV +             K A     E+               + 
Sbjct: 604 KKLSEKLGIGEITLRDIVRELE-----------KPARDPRDEMPKPILRTDVLDMKDLKP 652

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
             I +G V  V+DFG FV     +DGLVHISQ+   + +    + V  GD V VK+L  D
Sbjct: 653 GMILRGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKHPLEAVSVGDIVEVKVLSVD 712

Query: 679 -DRGKIKLSMK 688
             R +I+L+MK
Sbjct: 713 IGRKRIQLTMK 723


>gi|323484701|ref|ZP_08090060.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum
           WAL-14163]
 gi|323691768|ref|ZP_08106025.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum
           WAL-14673]
 gi|323401938|gb|EGA94277.1| hypothetical protein HMPREF9474_01811 [Clostridium symbiosum
           WAL-14163]
 gi|323504134|gb|EGB19939.1| hypothetical protein HMPREF9475_00887 [Clostridium symbiosum
           WAL-14673]
          Length = 379

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 14/192 (7%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVE 579
             +    R  +L      + +   +       VE +          I +GG   +  I E
Sbjct: 169 RSRIIGDRKQLLVAKKAAMQKELFEKIAVGQTVEGVVKNVTDFGAFIDLGGADGLLHISE 228

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQV 627
            +  +V        + D  T  I   +  ++  + +   +           V  I +G+V
Sbjct: 229 MSWGRVENPKKVFKVGDKVTALIKDINGEKVALSLKFPETNPWANAAEKYAVGNIVEGKV 288

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
            ++ DFGAFV      D L+H+SQ+S E V K SDV+  G  +  +++DF++   KI LS
Sbjct: 289 ARMTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLSAGQIITARVVDFNEADRKISLS 348

Query: 687 MKVVDQNTGKPI 698
            K ++     P+
Sbjct: 349 TKALEAPAEAPV 360



 Score = 40.7 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVA 658
           ++E+   +    S        +   GQV+ V +    +   G++ +G++  S+ + E   
Sbjct: 1   MSELSFEQMFEESSIKRLRAGEAVTGQVIGVKEDEIILSIAGSKSEGIITRSEFTNEPNV 60

Query: 659 KTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
             +  V  GD + VK+L   D  G   LS K +  + G
Sbjct: 61  DLTTKVSVGDELEVKVLKVNDGEGMASLSYKRLAADKG 98


>gi|295108633|emb|CBL22586.1| Ribosomal protein S1 [Ruminococcus obeum A2-162]
          Length = 301

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D D    I S+       A E  ++     E+  + +G V  +  +GAFV       
Sbjct: 161 IDVDKDSKKLILSAKEILRAKAEEERKNKVSNLEIGLVTEGTVESLQPYGAFVDLGNGLS 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GLVHISQ+  +R+ K S+V+  GD V VK+    D GK+ LS+K       K I
Sbjct: 221 GLVHISQICEKRIKKPSEVLAVGDKVKVKVTAIKD-GKLSLSIKEASDMMAKEI 273



 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++   + +       E   I  G V+ V +    +      +G++ +   S E   
Sbjct: 1   MAESMKDFEKELEESMKKIEEGDILTGTVISVDEKEVILDLKYYAEGVIPVEDYSREPGF 60

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              + V EGD V   ++  DD  G I LS 
Sbjct: 61  NIKEEVHEGDEVSATVVRKDDGHGNILLSR 90


>gi|284028353|ref|YP_003378284.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283807646|gb|ADB29485.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 19/149 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNI------DDDGTVKIASSSLAEIEAA----REMIRS 612
           +R ++   G  ++ ++  T A  ++      D+   +   +  LAE+E      R   ++
Sbjct: 578 VRRILDKTGSDLKSLIGNTAALRSVKAADFVDETFGLPTVTDILAELEKPGRDPRPAFKT 637

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    V+KI         +GQV  V  FGAF+     +DGL H+S LS   V    +VV
Sbjct: 638 ATFAEGVDKIADLKPGMRLEGQVTNVAAFGAFIDIGVHQDGLAHVSALSKNYVKDPREVV 697

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           K GD V VK+L+ D  R +I L++++ D+
Sbjct: 698 KPGDIVKVKVLEVDIPRQRISLTLRLDDE 726


>gi|51473703|ref|YP_067460.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
 gi|81390060|sp|Q68WL4|RS1_RICTY RecName: Full=30S ribosomal protein S1
 gi|51460015|gb|AAU03978.1| 30S ribosomal protein S1 [Rickettsia typhi str. Wilmington]
          Length = 568

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++   + E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   I +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V++    V V +
Sbjct: 201 KIKEG-MILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N    I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWDAI 283



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +       ++  G
Sbjct: 279 PWDAIKEEFPVGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFIVLEVDTEKHRVSLSIKQCQENP 366



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           +  I K  +  + DFG FV      DG++H   +S E     +D++   K+GD +  K+L
Sbjct: 376 IGTIIKAPIRNITDFGIFVVLGNNMDGMIHEGDISWE--DNGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             + ++ ++ L +K +  N 
Sbjct: 434 AINFEKEQVSLGIKQLSPNP 453


>gi|331084456|ref|ZP_08333558.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401319|gb|EGG80906.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 233

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            + +    +      + +   +   +      +  F P  ++     +   + +      
Sbjct: 33  WDKLEQMKEDKTEFEVSVEGIVKGGVIAYVEGIRAFIPVSKLALNYVENPEDFLKKTI-- 90

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                  T     +D+     + S+     E A    RS  D  +V  I +G V  +  +
Sbjct: 91  -------TVRVFEVDEQENRLVLSAKEILKEKADAEKRSKIDDIKVGSIVEGTVESLQTY 143

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           GAF+       GLVH+SQ+S +R+     V+  GDTV  K++  ++ GKI LSMK ++
Sbjct: 144 GAFIDLGDGISGLVHVSQISEKRIKSPKAVLSIGDTVKAKVIK-NEDGKISLSMKALN 200


>gi|296332843|ref|ZP_06875303.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305673189|ref|YP_003864861.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150123|gb|EFG91012.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411433|gb|ADM36552.1| putative RNA helicase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 719

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 99/513 (19%), Positives = 174/513 (33%), Gaps = 81/513 (15%)

Query: 228 EPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVS-YFSSEHSSW 286
           E   I         + +   +++ +  +     K +  + I+D  K+++      E    
Sbjct: 233 EKEDILKVSIEPPADHIKAYLEKQIIKNRSTSVKEILQETIEDSYKRLIQPAIEREIRKE 292

Query: 287 NEGEIVSVFEDIQAKVVRTVMLD---KKVRMDGRDS--------------------ETVR 323
              +       I ++ +R ++L    K   + G D                     + + 
Sbjct: 293 LSEKADEQAIHIFSENLRKLLLQPPMKGKTVLGVDPAFRTGCKLAVSDETGKVLKIDVIY 352

Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTL---GTREDEQ-YVDSLSGTQRNDFMMHYN 379
              A V   +  H     I    Q  +V       +RE EQ  V+ L    R  + +  N
Sbjct: 353 P-HAPVNKTKEAHEKVKVILEQHQVEMVAIGNGTASRETEQFIVNVLKDMPRKIYYVIVN 411

Query: 380 FL---PCATGEVSRMGAPSRREIGHGRL--ARRAIHPVLPQTAQFPYTLRI------VSE 428
                  +  E++R   P  +      +  ARR   P+       P ++ +      VS+
Sbjct: 412 EAGASVYSASELAREEFPELQVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQ 471

Query: 429 ---------ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII---L 476
                    + E+  +     V  +S AL+     +SK VAG  +   ++   F     L
Sbjct: 472 KRLNESLRFVVETVVNQVGVNVNTASAALLQYVAGLSKSVAGNVVKKREEIGKFSNRKEL 531

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
            DI                   G       +   GI            K+  L      +
Sbjct: 532 KDIPRLGAKTYEQCIGFLRVQEG----TEPLDRTGIHPESYKETKALLKKLGLSTEQIGT 587

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ-TGAKVNIDDDGTVKI 595
             L +   QL               +    +G+G   ++ I EQ T  + +  D+    +
Sbjct: 588 AELKDKINQLAL------------SETAQELGIGEITLKDICEQLTRPERDPRDEVPKPL 635

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             + + ++E  +E +             +G V  V+DFGAFV     +DGLVHIS+LS +
Sbjct: 636 LKTDVLQLEDLKEGME-----------LQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQ 684

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V    DVV  GD V V +   D  +G++ LSM
Sbjct: 685 FVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSM 717


>gi|289422374|ref|ZP_06424220.1| ribosomal protein S1 [Peptostreptococcus anaerobius 653-L]
 gi|289157209|gb|EFD05828.1| ribosomal protein S1 [Peptostreptococcus anaerobius 653-L]
          Length = 412

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 10/230 (4%)

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
           D  I   I   E      + +VA  +   IT   +     G+       A  ++    + 
Sbjct: 84  DATIKISILKLEQQKDLKELQVAMDEHKTITVHTVKALDRGL------YASYKSHNMFMP 137

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I    +K + ++   +G          I   + R +I         +  +   K      
Sbjct: 138 ISQIDTKFVKDTNEYVGMDLECYIK-EINARKNRIIISHREVAQEILDAERQEKREKFKA 196

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
                 +   AE EAA+     + +  EV +   G+V  +M +GAF+   G  +GL HI+
Sbjct: 197 EREAERARIKAEREAAKIAREELFNSLEVGEKRTGKVTNIMSYGAFIDL-GGVEGLAHIN 255

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            LS  RVA    VV  GD V V + D + +  +I LS+K  D++  K I 
Sbjct: 256 NLSWTRVADVESVVSVGDEVDVYIQDINPENKRIALSLKNPDEDPWKKIA 305



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + I +   V      +V++++D GAFV      +  + I +LS +RV K  DVV  G
Sbjct: 299 DPWKKIAEEVSVGSHVTAKVLRIIDKGAFVEVKPGVEAYLPIGELSEDRVNKVEDVVNIG 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D V   ++ F+ D  ++ LS+K + +   + 
Sbjct: 359 DEVKAAIIKFNPDTKRMMLSIKELTREPEED 389


>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
          Length = 248

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 6/229 (2%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E  +   +    
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVH-GPAEGRRGDATGGAA 70

Query: 370 QRNDFMMHY--NFLPCATGEVSRMGAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLRIV 426
                ++    N    A  +  R    S ++        R A    L        T+ I 
Sbjct: 71  GSAGAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
             +  SDGS   A V   +LAL+DAG+P+   + G      +D ++  +   +       
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTASTPRDPNNDTLDPLLDLSLPEE 190

Query: 487 GHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
             + F   GT +   +  + MD K+       M+       +    IL 
Sbjct: 191 QELPFLTVGTTTAMKVAMLTMDSKVHCTYVETMLAVGIDGCKQIREILE 239



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 27/214 (12%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           S G+     G T +L +V      +                E    V    G   +R + 
Sbjct: 37  SSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSAGAVVEVDVNVAGFAGVDRKRRAG 96

Query: 84  PTEN-EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
            ++     ++ ++  + +          +   + ++V+  D   S    ++ A + AL+ 
Sbjct: 97  GSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSVLSSDG--SLLAAAVNACTLALVD 154

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLD----------EDQGSLDLFVSGT----QDAVL 186
           +G+P  G + G             P  D           ++  L     GT    + A+L
Sbjct: 155 AGIPMPGLLCGCTASTPRD-----PNNDTLDPLLDLSLPEEQELPFLTVGTTTAMKVAML 209

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
            ++ + +    + +L   I G  + + ++E + K
Sbjct: 210 TMDSKVHCTYVETMLAVGIDGCKQIREILEGVIK 243


>gi|262195603|ref|YP_003266812.1| ribosomal protein S1 [Haliangium ochraceum DSM 14365]
 gi|262078950|gb|ACY14919.1| ribosomal protein S1 [Haliangium ochraceum DSM 14365]
          Length = 608

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
            + +  A ++ +     I   +   LS   R  +  F P  ++   P   +   IG    
Sbjct: 105 WDEISAACERDELIEGTITQRVKGGLSVTIRGGVKAFLPGSQVDLRPVRNLDAFIGQS-- 162

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             +  V +   K      G + ++   L E E A     ++  + E  ++ +G V  + +
Sbjct: 163 -YKFKVIKFNKKR-----GNIVLSRRVLLEKERAALKESTLERLKEGQEV-EGIVKNLTE 215

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAF+   G  DGL+HI+ +S  RV   S++ + GD V VK+L F+ D  ++ L +K + 
Sbjct: 216 YGAFIDL-GGIDGLLHITDMSWGRVNHPSELFQVGDHVRVKVLKFNADTERVSLGLKQIS 274

Query: 692 QNTG 695
           ++  
Sbjct: 275 EDPW 278



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      + KG+V  + DFG FV      DGLVH+S +S  +RV   S++ ++G
Sbjct: 364 PYEQLNEKYPPGTVVKGKVRNIADFGIFVEIEEGIDGLVHVSDMSWTQRVKHPSEMFQKG 423

Query: 668 DTVWVKLLDFD----DRGKIKLSMKVVDQNTG 695
           D V   LL+ D    ++ KI L +K ++ +  
Sbjct: 424 DEVEAVLLNIDTADGEKPKISLGIKQLNTDPW 455



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I       KI   +V+KV+DFGAFV      +GLVH+S++S E V     V+  G
Sbjct: 453 DPWDRIPFDFPPGKIVDAKVLKVLDFGAFVEIEKGIEGLVHVSEISDEHVDDPRKVLTPG 512

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
             + V++L  D + + I LS+K  ++ T
Sbjct: 513 QELKVQILSVDPQERKIGLSVKSANRAT 540



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 17/185 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  +L +    L ES L+  +    VE +     +    I +GG   +  I + +  +V
Sbjct: 180 SRRVLLEKERAALKESTLERLKEGQEVEGIVKNLTEYGAFIDLGGIDGLLHITDMSWGRV 239

Query: 586 N-------IDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVM 631
           N       + D   VK+   +           + + +      +      + +G+VV + 
Sbjct: 240 NHPSELFQVGDHVRVKVLKFNADTERVSLGLKQISEDPWSKAQEKYIPGTVVRGKVVSLK 299

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
           D+GAF+      +GLVHIS++S   RV   S +V  GD V   +LD D +  +I L MK 
Sbjct: 300 DYGAFIELEEGIEGLVHISEMSWTRRVKHPSKMVAVGDVVDAVVLDVDVKNNRISLGMKQ 359

Query: 690 VDQNT 694
           ++ N 
Sbjct: 360 LEPNP 364


>gi|94987197|ref|YP_595130.1| 30S ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731446|emb|CAJ54809.1| ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
          Length = 574

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +  + IT+       + G+V  ++D+G FV      +GLVHIS++S  R +   S +V +
Sbjct: 280 DPWQDITERFPETSHHVGKVTNLVDYGVFVELESGVEGLVHISEMSWTRKLRHPSQMVHQ 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +L  D D+ +I L MK V  N  +
Sbjct: 340 GDEVEVVILGIDQDKKRISLGMKQVKPNPWE 370



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             ++    E    K+N      +      L E   ++      T      ++  G+V  V
Sbjct: 160 DMLVNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLQTISE--GQVVVGKVKNV 217

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKV 689
            ++G FV   G  DGL+HI+ +S +R+    ++V  G  + +K+L FD    K+ L +K 
Sbjct: 218 TEYGVFVDL-GGLDGLLHITDMSWKRIRHPREMVNLGQELELKVLSFDKENQKVSLGLKQ 276

Query: 690 VDQNTGKPI 698
           +  +  + I
Sbjct: 277 LVPDPWQDI 285



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 104/261 (39%), Gaps = 40/261 (15%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           + +G VK+  ++ +  D+ G +   H+  M +K       +  +  ++++  +S +    
Sbjct: 209 VVVGKVKNVTEYGVFVDLGGLDGLLHITDMSWKRIRHPREMVNLGQELELKVLSFD---- 264

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV------ 573
                 +    +   + +++ +    + E  P          ++ N++  G  V      
Sbjct: 265 ------KENQKVSLGLKQLVPDPWQDITERFPETSH---HVGKVTNLVDYGVFVELESGV 315

Query: 574 --IRGIVEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV---- 619
             +  I E +  +        V+  D+  V I      +   +  M +   +  E+    
Sbjct: 316 EGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMKQVKPNPWELVGEK 375

Query: 620 ---NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
                I +G V  + +FG F+      DGL+H+S +S  ++V   +++ K GDTV  K+L
Sbjct: 376 YPEGTILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVL 435

Query: 676 DFD-DRGKIKLSMKVVDQNTG 695
             D +  K  L +K + ++  
Sbjct: 436 TVDQENEKFTLGIKQLTEDPW 456



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V  V  I KG +  + DFG FV      +GLVH+S+LS++++   S++ K+G
Sbjct: 454 DPWSNAPSVYPVGGIVKGIITNITDFGLFVEVEEGIEGLVHVSELSSKKIKSPSEIYKDG 513

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           + +  K++    +  ++ LS+K + ++ 
Sbjct: 514 EEIQAKIIHVSAEERRLGLSIKQLKEDE 541


>gi|18311132|ref|NP_563066.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13]
 gi|18145815|dbj|BAB81856.1| 30S ribosomal protein S1 [Clostridium perfringens str. 13]
          Length = 378

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +  A ++ K  ++ +   +   +      L  F P  +      + +  ++G   +V 
Sbjct: 99  DDLKEAFEEEKSIKVSLKEVVKGGIVGDFNGLRVFMPASQCAGRRIENLEELVGKTLEV- 157

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
                     +  + +    + S  + + E      +++    +  +  KG+V ++  FG
Sbjct: 158 --------RVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKFG 209

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  +GLVH+S +S  RV K  +VV  GD V V + + D DR +I LS+K V +N
Sbjct: 210 AFVDI-GGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIKN 268

Query: 694 TGKPI 698
             + +
Sbjct: 269 PWETL 273



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 21/197 (10%)

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE- 579
           ++  K  R  +++           +       ++       ++  +   G  V  G VE 
Sbjct: 160 IEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGEKRKGKVTRLAKFGAFVDIGGVEG 219

Query: 580 -------------QTGAKVNIDDDGTVKIASSSLAEIEAA---REMIRSITDVPEVNKI- 622
                        +    V++ D+  V ++   +     A   +++I++  +  E  K+ 
Sbjct: 220 LVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIKNPWETLEGLKVG 279

Query: 623 --YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
               G+V   +  GAFV      +GLVHIS+++ E +AK SD+++ G  V VK+L+ DD 
Sbjct: 280 NVVLGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNIDDE 339

Query: 680 RGKIKLSMKVVDQNTGK 696
             K+ LS+K   + + +
Sbjct: 340 NKKMSLSIKDAVETSNE 356


>gi|299820647|ref|ZP_07052536.1| RNA-binding protein [Listeria grayi DSM 20601]
 gi|299817668|gb|EFI84903.1| RNA-binding protein [Listeria grayi DSM 20601]
          Length = 141

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKVQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDAVTVKVMNI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LS++       +P
Sbjct: 64  GDDGKIGLSIRKAVDRPDRP 83


>gi|325921819|ref|ZP_08183636.1| transcriptional accessory protein [Xanthomonas gardneri ATCC 19865]
 gi|325547696|gb|EGD18733.1| transcriptional accessory protein [Xanthomonas gardneri ATCC 19865]
          Length = 788

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 19/154 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQ------TGAKVNIDDDGTVKIASSSLAEIEAAREMIR----- 611
           +  ++G  GK I+ ++           ++  D+   V      L E+E      R     
Sbjct: 580 VERIVGSTGKPIKALLGDGSFLRGLKPELFTDEQFGVPTVRDILKELEKPGRDPRPEFKA 639

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        +   + +G V  V  FGAFV     +DGLVHIS LS   V    DVV
Sbjct: 640 AQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVV 699

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 700 KAGDIVKVKVLEVDVARKRIALTCRLSDTPPPTD 733


>gi|158337244|ref|YP_001518419.1| S1 RNA-binding domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158307485|gb|ABW29102.1| S1 RNA binding domain protein [Acaryochloris marina MBIC11017]
          Length = 720

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I  +TD+    ++ +G V  V +FGAFV     +DGLVHISQ++ + V     +VK 
Sbjct: 633 KEGITELTDLKPEMEL-EGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVKV 691

Query: 667 GDTVWVKLLDFDDR-GKIKLSMK 688
           G  V V++L+ + +  +I LSM+
Sbjct: 692 GQVVKVRVLEVNQKLKRIGLSMR 714


>gi|297620416|ref|YP_003708553.1| hypothetical protein wcw_0172 [Waddlia chondrophila WSU 86-1044]
 gi|297375717|gb|ADI37547.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 746

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 586 NIDDDGTVKIASSSLA-EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +I D+          + E    R+ +  I D+    ++ +G V  V  FGAFV     +D
Sbjct: 610 DILDELKKPGRDPRKSFEPPKFRDDVTKIEDLKAGMEL-EGVVTNVTAFGAFVDIGVHQD 668

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GLVHIS+LS + + + SDVVK GD + V++LD D +  +I LS K   + T  PI 
Sbjct: 669 GLVHISELSDQFIKEPSDVVKAGDRLKVRVLDVDQKLKRISLSAKSKSKGTA-PIA 723


>gi|326316779|ref|YP_004234451.1| 30S ribosomal protein S1 [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373615|gb|ADX45884.1| ribosomal protein S1 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 561

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L F
Sbjct: 191 EGS-IVQGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L+ D D+ +
Sbjct: 282 GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPSKLVSLGDEVEVMVLEIDEDKRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 342 ISLGMKQCKANPWQE 356



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     + +    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDP 440



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFVTVNDKGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAVVVNVDRKTRNIQLSIKAKD 523


>gi|255327380|ref|ZP_05368454.1| protein YhgF [Rothia mucilaginosa ATCC 25296]
 gi|255295660|gb|EET75003.1| protein YhgF [Rothia mucilaginosa ATCC 25296]
          Length = 835

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            + +G V  V  FGAFV     +DGLVHISQ+S   VA   D+V+ GD V V++++ D  
Sbjct: 762 MVLEGTVSNVAAFGAFVDIGVHQDGLVHISQMSRGYVANPHDIVRSGDIVQVRVVEVDPV 821

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+ V D+N
Sbjct: 822 RRRISLSLLVEDEN 835


>gi|258404285|ref|YP_003197027.1| 30S ribosomal protein S1 [Desulfohalobium retbaense DSM 5692]
 gi|257796512|gb|ACV67449.1| ribosomal protein S1 [Desulfohalobium retbaense DSM 5692]
          Length = 575

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +    I +     + + G+V  ++D+GAFV      +GLVHIS++S  R +   S V + 
Sbjct: 280 DPWVDIANKFPEGEKFSGKVTNIVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQVCQV 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +L  D DR +I L MK V  N  
Sbjct: 340 GDEVDVVILGVDSDRKRISLGMKQVRPNPW 369



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N      +      L E   ++      T   E +++  G+V  + ++G FV 
Sbjct: 168 EFRILKINRRRSNVIVSRRVLLEEERESKRQELLKT--LEEDQVVHGKVKNITEYGVFVD 225

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ ++ +R+    ++V+ GD + +K+L+FD +  K+ L +K +  +    
Sbjct: 226 L-GGLDGLLHITDMAWKRIRHPKEMVQLGDDLELKVLNFDQESEKVSLGLKQLVPDPWVD 284

Query: 698 IV 699
           I 
Sbjct: 285 IA 286



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I     V    +G+V  + DFG FV      +GLVH+S+LS +++   S+  +EG
Sbjct: 454 DPWSQIPARYPVGTNVEGKVTNITDFGLFVEVEEGIEGLVHLSELSRKKIKTPSEHFEEG 513

Query: 668 DTVWVKLLDF--DDRGKIKLSMKV 689
             V  K++    D+R ++ LS+K 
Sbjct: 514 QEVSAKVIHVSGDER-RLGLSIKQ 536



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 96/258 (37%), Gaps = 34/258 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G VK+  ++ +  D+ G +   H+  M +K       +  +  D+++  ++ +     + 
Sbjct: 212 GKVKNITEYGVFVDLGGLDGLLHITDMAWKRIRHPKEMVQLGDDLELKVLNFDQESEKVS 271

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
                       + +++ +  + +    P  E  +     I +      +  G + +  I
Sbjct: 272 LG----------LKQLVPDPWVDIANKFPEGEKFSGKVTNIVDYGAFVELEPGVEGLVHI 321

Query: 578 VE--------------QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKI 622
            E              Q G +V++   G           ++  R     +         +
Sbjct: 322 SEMSWTRKLRHPSQVCQVGDEVDVVILGVDSDRKRISLGMKQVRPNPWDVVSEKYPEGTV 381

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +  +  + DFG F+      DGL+H+S +S  +++   +++ + GD V  K+L  D + 
Sbjct: 382 LEAPIKNITDFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYQVGDVVQAKVLTVDKEN 441

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K  L +K + ++    I
Sbjct: 442 EKFTLGIKQLSEDPWSQI 459



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 602 EIEAAREMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             EAA E          E   I +G++V++ D    V      +G + I++         
Sbjct: 17  SFEAALEDYLQPDFGEVEDGSIARGEIVRIGDESVLVDVNFKSEGEIPIAEFQDSEGNL- 75

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLS------MKVVD 691
              V  GD V V ++  D+  G I+LS      MKV+D
Sbjct: 76  --KVSVGDKVDVFVVHKDELEGTIRLSYERAKRMKVLD 111


>gi|120611941|ref|YP_971619.1| 30S ribosomal protein S1 [Acidovorax citrulli AAC00-1]
 gi|120590405|gb|ABM33845.1| SSU ribosomal protein S1P [Acidovorax citrulli AAC00-1]
          Length = 561

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L F
Sbjct: 191 EGS-IVQGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L+ D D+ +
Sbjct: 282 GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPSKLVSLGDEVEVMVLEIDEDKRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 342 ISLGMKQCKANPWQE 356



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     + +    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDP 440



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFVTVNDKGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAVVVNVDRKTRNIQLSIKAKD 523


>gi|322503669|emb|CBZ38755.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 246

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 11/247 (4%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR     R +    G L    GS     G ++       G RE     
Sbjct: 5   KEYVSPAGLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKV-CACVFGPRESLHKQ 63

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           ++     +            A          S+     G    +    V+  +      +
Sbjct: 64  EAKH--DKGLVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ + DG+  +A V  + LAL+DA V +   V  I  G++ +     +L D++ DE
Sbjct: 122 HIYIEVLQKDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDE----HMLIDLTNDE 177

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISEN----IMVMALQQAKRGRLHILNEMSKVL 539
                     A T      +        +  +    ++  A + A +     + +  +  
Sbjct: 178 LRSQCPVIAAAFTGHDTRNIIWLETASRLPPDSAARLLKCAEEGATKLFETAMRKALEEH 237

Query: 540 SESRLQL 546
           ++  L L
Sbjct: 238 AKKILTL 244



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 13/215 (6%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           DG+   T G++ V A V   R     Q    D   +T       +A G+      RR   
Sbjct: 37  DGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTCEVAVAAFA-GENRRNPQRRSKL 95

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             +    + ++    I  L S+   ++  + I V+Q D      +  + AA  AL+ + +
Sbjct: 96  SEDIGAAVVQVARSVI--LLSQYPNSQIHIYIEVLQKDGNEK--IACVNAACLALIDANV 151

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS---GTQDAVLMVELEANQLSEDVV 200
                V       ++   +++   DE +    +  +   G     ++    A++L  D  
Sbjct: 152 AMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVIAAAFTGHDTRNIIWLETASRLPPDSA 211

Query: 201 LDAIIFGHNECKPVIE-AISKLAKMCAKEPIVIDS 234
              +         + E A+ K  +  AK+ + + S
Sbjct: 212 ARLLKCAEEGATKLFETAMRKALEEHAKKILTLQS 246


>gi|299139798|ref|ZP_07032970.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX8]
 gi|298598152|gb|EFI54318.1| ribosomal protein S1 [Acidobacterium sp. MP5ACTX8]
          Length = 654

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +    +RN+ G  G  I   V +   K        V      L E + A++ +   T  
Sbjct: 218 QVEVRPVRNLDGYIGTEIEVRVIKLNKKRG----NVVISRKELLEEDQNAKKAVTLST-- 271

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   ++ G V  + D+GAFV   G  DGL+HI+ +S  R+    D+V  GD + VK+L 
Sbjct: 272 LEEGSVFTGVVKNLTDYGAFVDM-GGLDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLK 330

Query: 677 FD-DRGKIKLSMKVVDQNTGKP 697
           FD ++ ++ L  K +  +    
Sbjct: 331 FDKEKQRVSLGFKQLTPDPWLD 352



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +     T+   +    +G+V+ V D+GAFV      +GLVH+S+++  +R+   S +VK 
Sbjct: 348 DPWLDATERYPIGAQVRGRVLSVTDYGAFVELEQGIEGLVHVSEMTWSKRMKHPSKMVKP 407

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           GD V   +L  +    +I L MK +  N  + +
Sbjct: 408 GDIVDTIILSVNPNDRRISLGMKQLQDNPWEAL 440



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ D   +  + +G+V  + DFGAF+      DGLVH+S LS  +R+   S+V+K+G
Sbjct: 436 PWEALEDKYPIGAVIEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKG 495

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + V   +L  + +  ++ L +K +  +  
Sbjct: 496 EKVKAIVLGVEPENRRLSLGVKQLQPDVW 524



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++  +      V  + KG+ ++   FGAFV      +GL H+S+   E   + +  ++ G
Sbjct: 522 DVWDTFFAQHRVGDVIKGKTLRTAQFGAFVEIAEGVEGLCHVSEAVDETGKQIT--LEVG 579

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D    K++  + +  K+ LS+K V +   +
Sbjct: 580 DEHEFKIVKMNQEEKKVGLSIKAVGEEASR 609


>gi|296505343|ref|YP_003667043.1| general stress protein 13 [Bacillus thuringiensis BMB171]
 gi|296326395|gb|ADH09323.1| general stress protein 13 [Bacillus thuringiensis BMB171]
          Length = 114

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 10  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 69

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 70  RKMSLSLKAAKRKQGRILI 88


>gi|258652498|ref|YP_003201654.1| RNA binding S1 domain-containing protein [Nakamurella multipartita
           DSM 44233]
 gi|258555723|gb|ACV78665.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233]
          Length = 793

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  V  FGAFV     +DGLVH+S +S   ++   +VV  G  V VK++  D
Sbjct: 660 VGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFISDPREVVTSGQVVKVKVMAVD 719

Query: 679 D-RGKIKLSMKVVDQNTGKP 697
           + R +I L+++ +D   G P
Sbjct: 720 EQRKRISLTLR-LDDEPGAP 738


>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
 gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
          Length = 232

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 3/165 (1%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR +E +R I  + G++ +  GS+      T+ +  V  G R+    +D +    R
Sbjct: 4   PREDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGV-YGPRQGGPGIDKVEF-DR 61

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
               +       AT       A    E     +  RA+   +        T+ + + + E
Sbjct: 62  GRLDVDVKLATFATSGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVLE 121

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
           ++GS   AT+  +S AL +AGV +   V+    G   DG + ++L
Sbjct: 122 ANGSELCATIAAASAALCEAGVAMRDLVSACTGGGA-DGPNALLL 165



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 3/111 (2%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+ ++TG I+ Q+ G+      +T V+  V   R    G D         +    +   
Sbjct: 15  RPIFVKTGVIS-QAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRLDVDVKLATF 73

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDL 122
                R +    + E   S ++ R++          K    V   V++ + 
Sbjct: 74  ATSGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVLEANG 124


>gi|315172638|gb|EFU16655.1| S1 RNA binding domain protein [Enterococcus faecalis TX1346]
          Length = 159

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
            D GKI LS++   +  
Sbjct: 64  GDDGKIGLSIRKAQEPA 80


>gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 [bacterium Ellin514]
 gi|223894346|gb|EEF60799.1| ribosomal protein S1 [bacterium Ellin514]
          Length = 553

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N +    V      + +    R         P    I KG V  + DFGAF+ 
Sbjct: 146 EFKVVKINQERQNIVLSRRELIEQERNDRRSKLLSEMTP--GDIRKGTVKNITDFGAFID 203

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
                DGL+HI+ +S  R+A  SD++K G  + V +LD + ++ ++ L +K    N    
Sbjct: 204 L-NGIDGLLHITDMSWGRIAHPSDILKVGQDIDVVVLDINKEKERVSLGLKQKLANPWDN 262

Query: 698 I 698
           I
Sbjct: 263 I 263



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +I    +V  +  GQV K+  FGAFV      DGLVHISQ+S ERV K  +V+K
Sbjct: 430 AVDPWSNIDQFYKVGDLVTGQVTKLASFGAFVGLQHEIDGLVHISQVSEERVDKIKNVLK 489

Query: 666 EGDTVWVKLLDFDDR-GKIKLSMKV 689
            G  V  +++  D    +I LS+K 
Sbjct: 490 VGQEVTARVIKIDKSDRRIGLSIKA 514



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 578 VEQTGAKVNID--DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           + + G  +++   D    K   S   + + A          P   K+ KG+VV ++ +GA
Sbjct: 227 ILKVGQDIDVVVLDINKEKERVSLGLKQKLANPWDNIEAKYPIGAKV-KGKVVNLVPYGA 285

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV      +GLVH+++LS  +R+AK +DV+K    +   +L  + +  KI L ++ ++ N
Sbjct: 286 FVELEPGVEGLVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVRQLETN 345

Query: 694 TG 695
             
Sbjct: 346 PW 347



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
                 D        KG++  +  +GAF+      DG++H+S +S  R +   S+V+K+G
Sbjct: 346 PWDKAMDKYPPGTRVKGKIRNLTSYGAFIELEEGLDGMIHVSDISWTRKINHPSEVLKKG 405

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           D V   +L+ D    +I + +K +  +    I
Sbjct: 406 DEVEAVVLEIDKANQRIAVGVKQLAVDPWSNI 437



 Score = 37.2 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E ++  T      +I KG V++V      V      +G++  ++    +       VK G
Sbjct: 6   EAMKQSTMRFAAGEIVKGTVIEVRPKEVMVDIGYKSEGVITANEFDDIKT------VKIG 59

Query: 668 DTVWVKLLDF-DDRGKIKLS 686
           D + V +    D  G + LS
Sbjct: 60  DEIDVLIEKLEDKDGMVVLS 79


>gi|325673476|ref|ZP_08153167.1| S1 RNA binding domain protein [Rhodococcus equi ATCC 33707]
 gi|325555497|gb|EGD25168.1| S1 RNA binding domain protein [Rhodococcus equi ATCC 33707]
          Length = 774

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK GD V 
Sbjct: 634 EKVAHLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVSDPREVVKSGDVVK 693

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+L+ D +R +I L++++ D+
Sbjct: 694 VKVLEVDVERQRIGLTLRLDDE 715


>gi|325186819|emb|CCA21364.1| PREDICTED: hypothetical protein isoform 1 [Albugo laibachii Nc14]
          Length = 1138

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQLSTER-VAKTSD 662
           R+   +     +V  +Y G+V +VM+ G FV F    G ++GLVH+S L+  R +    +
Sbjct: 157 RQKRSTSNLSLKVYGVYSGKVSRVMERGVFVEFSVKNGRKEGLVHVSNLTGNRSIEHPKE 216

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           +V+ G  V VK++      KI LSM+ VDQ TG+ ++
Sbjct: 217 IVRSGQHVKVKVISISGS-KILLSMRDVDQKTGRDLL 252


>gi|317501909|ref|ZP_07960093.1| YhgF protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088276|ref|ZP_08337195.1| hypothetical protein HMPREF1025_00778 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896589|gb|EFV18676.1| YhgF protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408520|gb|EGG87986.1| hypothetical protein HMPREF1025_00778 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 717

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKG 625
           +G+G   +R IV++             K A     E+               +   I KG
Sbjct: 602 LGIGEITLRDIVKELE-----------KPARDPRDEMPKPILRTDVLEMKDLKEGMILKG 650

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D  + +I+
Sbjct: 651 TVRNVIDFGVFVDIGVHQDGLVHISQITDRYIKHPLEAVSVGDVVDVKVMSVDMKKKRIQ 710

Query: 685 LSMKVV 690
           L+M+ +
Sbjct: 711 LTMRGI 716


>gi|312139218|ref|YP_004006554.1| RNA binding protein [Rhodococcus equi 103S]
 gi|311888557|emb|CBH47869.1| RNA binding protein [Rhodococcus equi 103S]
          Length = 774

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK GD V 
Sbjct: 634 EKVAHLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVSDPREVVKSGDVVK 693

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+L+ D +R +I L++++ D+
Sbjct: 694 VKVLEVDVERQRIGLTLRLDDE 715


>gi|238650580|ref|YP_002916432.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
 gi|238624678|gb|ACR47384.1| 30S ribosomal protein S1 [Rickettsia peacockii str. Rustic]
          Length = 568

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V+     V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + +
Sbjct: 259 IKFDEKTNRISLGIKQLDSNPWEAV 283



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAVKEEFPVGKQMTGKVTNFADYGIFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  I K  +  + DFG FV      DG++H   +S E   K +D++   K+GD +  K+L
Sbjct: 376 VGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWE--DKGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K +  N  + I
Sbjct: 434 AINIEKEQVSLGIKQLSPNPYQEI 457


>gi|114568652|ref|YP_755332.1| 30S ribosomal protein S1 [Maricaulis maris MCS10]
 gi|114339114|gb|ABI64394.1| SSU ribosomal protein S1P [Maricaulis maris MCS10]
          Length = 566

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E      G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAVLEESRAEQRAELVGQLAEGEAR-DGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            +S  RV   S+VV+ G TV V+++  + +  +I L MK +  +  +
Sbjct: 229 DMSWSRVGHPSEVVEVGQTVKVQIIKINKETQRISLGMKQLMSDPWE 275



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   ++G+V  + ++GAFV      +GLVH+S++S  ++      ++  
Sbjct: 272 DPWEGVAAKYPVGATFEGRVTNIAEYGAFVELEEGVEGLVHVSEMSWTKKNVHPGKILST 331

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +LD D D+ +I L +K   +N  +
Sbjct: 332 SQEVQVMVLDVDADKRRISLGVKQTQRNPWE 362



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVV 664
            R       +        +G++  + +FG FV   G  DG+VH+S +S ++   +  +  
Sbjct: 357 QRNPWEVFAETFPSGTAIQGEIKNITEFGLFVGLEGDIDGMVHLSDISWDQSGEQAIEGF 416

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           K+GD V  K+LD D ++ ++ L +K +  + 
Sbjct: 417 KKGDMVDAKVLDVDVEKERVSLGIKQLAGDP 447



 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             +  S LS +R  +  +    GD V  ++ + D    +I LS+K ++ +  +  V
Sbjct: 483 AFIRKSDLSRDRGEQRPERFAVGDKVDARITNIDKGTRRISLSIKALEISEEREAV 538


>gi|308066886|ref|YP_003868491.1| hypothetical protein PPE_00051 [Paenibacillus polymyxa E681]
 gi|305856165|gb|ADM67953.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 174

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV   G   GLVHIS+++   V   +D +K  D V VK+++ 
Sbjct: 4   EVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVKDVNDHLKINDVVMVKVINV 63

Query: 678 DDRGKIKLSMKV 689
           D  GKI LS+K 
Sbjct: 64  DKDGKIGLSIKQ 75


>gi|322435886|ref|YP_004218098.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163613|gb|ADW69318.1| RNA binding S1 domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 588

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE    K++  D    +I+      +        ++++  ++     G V +  DFGAFV
Sbjct: 264 VEAKILKIDATDPARRRISIGMKQLLPH---PWDTVSEQFKIGDKVTGTVTRDADFGAFV 320

Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                 +GL+HIS+++  ++V K SDVVK GD+V   +L  D ++ ++ L +K    +  
Sbjct: 321 EIAPGIEGLIHISEMAWGKKVRKPSDVVKVGDSVEAVILGIDTEQKRMSLGLKQALGDPW 380

Query: 696 KPIV 699
             +V
Sbjct: 381 AELV 384



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 11/155 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P         D++  ++G   + IR  +  T   +   + G         + +E 
Sbjct: 145 MRAFLPSSRSGTRDADEMAKLVG---QEIRVRI--TTLDLEGGESGRPDAVVDRRSVVEE 199

Query: 606 -AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            AR              +  G V  + ++GAFV   GA D L+HIS ++  RVA  +DV+
Sbjct: 200 EARASADQRFSELAEGDVVNGTVRSLTEYGAFVDLAGA-DALLHISDMAWHRVANPADVL 258

Query: 665 KEGDTVWVKLLDFD----DRGKIKLSMKVVDQNTG 695
             GD+V  K+L  D     R +I + MK +  +  
Sbjct: 259 SVGDSVEAKILKIDATDPARRRISIGMKQLLPHPW 293



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +    +        + +G V  +  FGAFV      +G++HIS++ + +R+   SDV++ 
Sbjct: 378 DPWAELVKTVHAGSVVEGPVSSITKFGAFVTIAEGVEGMIHISEITAEKRLNHPSDVLRV 437

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVV 690
           G+ V  ++L+ D   + +KLS+K +
Sbjct: 438 GEVVQAQVLEIDREKRQLKLSIKQL 462


>gi|238927087|ref|ZP_04658847.1| S1 domain RNA-binding protein [Selenomonas flueggei ATCC 43531]
 gi|238885067|gb|EEQ48705.1| S1 domain RNA-binding protein [Selenomonas flueggei ATCC 43531]
          Length = 729

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G V  + DFGAF+     + GL+HIS++S  RV    DV+  GDT+ V ++  D
Sbjct: 650 VGTIMRGTVRNITDFGAFIDIGLKQAGLLHISEMSCHRVRHPLDVLSVGDTLDVMIISID 709

Query: 679 D-RGKIKLSMKVVDQN 693
           + RG+I LS+K ++  
Sbjct: 710 EARGRIGLSVKRMEAE 725


>gi|254464531|ref|ZP_05077942.1| ribosomal protein S1 [Rhodobacterales bacterium Y4I]
 gi|206685439|gb|EDZ45921.1| ribosomal protein S1 [Rhodobacterales bacterium Y4I]
          Length = 559

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLSEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQEDPW 272



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +N ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDLVGAKYPLNSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDGAKRRVSLGLKQTMRNPWE 360



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER        +
Sbjct: 356 RNPWEVFAETHPEGTQVEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYR 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D D+ +I LS+K +
Sbjct: 416 KGDVVQAVVSEVDVDKERISLSIKAL 441



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +   +V  + + G  V + G +   +  S L+ +R  +  +    G
Sbjct: 444 DKFAEAVGGVKRGSVITVEVTAIEEGGIEVEYEGMK-SFIRRSDLARDRADQRPERFSVG 502

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 503 DKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 535


>gi|118566913|gb|ABL01768.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 8/129 (6%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+ + + GK +   V +   K N      V ++  ++ E E + E  + + ++ 
Sbjct: 23  VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAERDQLLENLQ 77

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F
Sbjct: 78  EGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKF 135

Query: 678 D-DRGKIKL 685
           D +R ++ L
Sbjct: 136 DRERTRVSL 144


>gi|227499760|ref|ZP_03929860.1| S1 domain RNA-binding protein [Anaerococcus tetradius ATCC 35098]
 gi|227218146|gb|EEI83412.1| S1 domain RNA-binding protein [Anaerococcus tetradius ATCC 35098]
          Length = 699

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +  I D+ E   I KG+V  + DFGAFV      DGLVH+S++S + +    +V+  
Sbjct: 613 RKEVMGIDDLKEG-MILKGKVRNITDFGAFVDIGVGVDGLVHVSKISDKFIKNPREVLTN 671

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQ 692
              V VK+++ D +  +I LSMK + +
Sbjct: 672 AQIVDVKVVEIDKKKERIGLSMKDIGE 698


>gi|160936761|ref|ZP_02084127.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440253|gb|EDP17999.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
           BAA-613]
          Length = 258

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 10/214 (4%)

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            ED+   ++      +     +  +    G         ++     ++ I   +   +  
Sbjct: 26  MEDYAAELEASYKTLNQRHIEITEEESGAGAKWAQFAQMMEDRTVVKVKIAEAVKGGVVT 85

Query: 542 SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA 601
           S  ++  F P      +  + +  +    GK +  ++      + +D +    + S    
Sbjct: 86  SLEEVRAFIPAS---QLSTEYVEKLEDWQGKYVEAVI------ITVDPEKKRLVLSGREV 136

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E      +      +   + +G V  +  +GAF+      DGL+HISQ+ST+R+   S
Sbjct: 137 EKEKKEAQKKERMAQFKAGDVVEGTVDSIKPYGAFIKLDDGVDGLLHISQISTQRIKHPS 196

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            V+ EG TV VK+L   + GK+ LSMKV+ +   
Sbjct: 197 AVLTEGQTVKVKILSAQE-GKLSLSMKVLAEQQA 229


>gi|145346016|ref|XP_001417493.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577720|gb|ABO95786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1135

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST 654
           S        +   ++    P V  +Y+G+V  VMDFGAFV     +   +GLVH+S ++ 
Sbjct: 150 SHSLASAQTKSDEKTRDGEPSVGGVYRGRVTNVMDFGAFVELVEFKRKAEGLVHVSAITD 209

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             +    D  + G++V+VK+L+ +   KI LSMK VDQ +GK 
Sbjct: 210 RHLKSAKDGARRGESVFVKVLNRNG-NKISLSMKDVDQISGKE 251


>gi|313904089|ref|ZP_07837469.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
 gi|313471238|gb|EFR66560.1| RNA binding S1 domain protein [Eubacterium cellulosolvens 6]
          Length = 362

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     +  +      I           ++    +     V  + +G V  + DFGAF+
Sbjct: 152 QEIEFKIIEFNPKRRRIIGDRKQLVAAEKKKAQEELFSHITVGDVVEGVVKNITDFGAFI 211

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
              GA DGL+HIS++S  RV     +V  GD + V + D     +I LS+K  DQN  
Sbjct: 212 DLGGA-DGLLHISEMSWGRVDNPKSIVAVGDKIKVLIKDIKGD-RIALSLKFEDQNPW 267



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 20/200 (10%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           + + I    ++   + R  I +    V +E +    E    + +  +    ++N+   G 
Sbjct: 150 MDQEIEFKIIEFNPKRRRIIGDRKQLVAAEKKKAQEELFSHITVGDVVEGVVKNITDFGA 209

Query: 572 KV-------IRGIVEQTGAKVN-------IDDDGTVKIASSSLAEI-----EAAREMIRS 612
            +       +  I E +  +V+       + D   V I       I        +    S
Sbjct: 210 FIDLGGADGLLHISEMSWGRVDNPKSIVAVGDKIKVLIKDIKGDRIALSLKFEDQNPWLS 269

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
             +   V  +  G+V ++ DFGAFV      D L+H+SQ+S + V K +DV+  G  +  
Sbjct: 270 ADEKYAVGTVVTGKVARMTDFGAFVELEPGIDALLHVSQISRDHVDKPADVLAIGQDITA 329

Query: 673 KLLDFD-DRGKIKLSMKVVD 691
           +++DF+    KI LS+K ++
Sbjct: 330 EIVDFNAADRKISLSVKALE 349



 Score = 41.8 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           EM+       +  +I +G V+ V      ++     DG++  S+ S +     + V   G
Sbjct: 8   EMLNESFKTVKNGEIVEGTVIDVNPEQIVLNIGYKADGILTRSEYSNDSSVDLTTVASLG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+ V++L   D  G++ L+ K +    G
Sbjct: 68  DTMEVRVLKINDGEGQVLLTYKRLAAERG 96


>gi|283458687|ref|YP_003363322.1| transcriptional accessory protein [Rothia mucilaginosa DY-18]
 gi|283134737|dbj|BAI65502.1| transcriptional accessory protein [Rothia mucilaginosa DY-18]
          Length = 854

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            + +G V  V  FGAFV     +DGLVHISQ+S   VA   D+V+ GD V V++++ D  
Sbjct: 781 MVLEGTVSNVAAFGAFVDIGVHQDGLVHISQMSRGYVANPHDIVRSGDIVRVRVVEVDPA 840

Query: 680 RGKIKLSMKVVDQN 693
           R +I LS+ V D+N
Sbjct: 841 RRRISLSLLVEDEN 854


>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
          Length = 233

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 18/227 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR+D R++  +R I +++ LL +  GS+ F   D  +++    G  E     + +S    
Sbjct: 2   VRIDKRNNNQIRSIESELALLNKADGSAKFSL-DNSSVLAAIYGPVEVNPRKEKIS---- 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
               +   F P +       G  + +      L R AI  V+         + I+ ++  
Sbjct: 57  -KATVEVVFTPDS-------GNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYS 108

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DGS    ++  + LAL+DAG+ ++  +A I++    DG    I  D +  E++      
Sbjct: 109 TDGSIVSCSINAACLALLDAGIELNSLIASISLSFNSDGQ---IYLDPTMKEENESKATA 165

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             A        + M    G I+E     ALQ A+     IL  +   
Sbjct: 166 IYAFNSQ--LKLMMIKSSGIITEQQNQEALQLARSSCERILAYIRTA 210



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 17/201 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG+   +   + VLA +     +             +E+      +   +         
Sbjct: 25  ADGSAKFSLDNSSVLAAIYGPVEVNPR----------KEKISKA-TVEVVFTPDSGNQNY 73

Query: 87  NEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
                  +I  +I  +       +    +II V   D        S+ AA  AL+ +G+ 
Sbjct: 74  QTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYSTDGSIVSC--SINAACLALLDAGIE 131

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLD 202
               +    + +  +GQ  L+P + E+ +       +      LM+   +  ++E    +
Sbjct: 132 LNSLIASISLSFNSDGQIYLDPTMKEENESKATAIYAFNSQLKLMMIKSSGIITEQQNQE 191

Query: 203 AIIFGHNECKPVIEAISKLAK 223
           A+    + C+ ++  I    K
Sbjct: 192 ALQLARSSCERILAYIRTAVK 212


>gi|257416081|ref|ZP_05593075.1| SSU ribosomal protein S1P [Enterococcus faecalis AR01/DG]
 gi|257157909|gb|EEU87869.1| SSU ribosomal protein S1P [Enterococcus faecalis ARO1/DG]
          Length = 403

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S               +        + +G+V ++ DFGAF+   G  D
Sbjct: 170 IEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDL-GGVD 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S+++ + V K SD +  G+ V VK+L  + + G+I LS+K         I
Sbjct: 229 GLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDI 283



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + +
Sbjct: 291 TVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPE 350

Query: 680 RGKIKLSMKVVDQ 692
             +I LS+K ++ 
Sbjct: 351 EHRIALSIKALEP 363



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           +              E   +      V  I KG+V+ + D    V   G   +G+V   +
Sbjct: 1   MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE 60

Query: 652 LSTERVAKTSDVVKEGDTVW-VKLLDF---DDRGKIKLSMKVVD 691
           LST  V    ++VK GD +  V +       + G   LS + +D
Sbjct: 61  LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLD 104


>gi|78222087|ref|YP_383834.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15]
 gi|78193342|gb|ABB31109.1| SSU ribosomal protein S1P [Geobacter metallireducens GS-15]
          Length = 586

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +  GG + + I      KV   +     I  S    +E  RE  R  T       ++ +G
Sbjct: 163 LRPGGNLDKYIGTTDRFKVLKLNKKRGNIVLSRRVLMEEERESSRKETLATLAEGQVREG 222

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+H++ +S  R+   S+++K GD + VK+L +D ++GKI 
Sbjct: 223 VVKNITDYGAFVDI-GGVDGLLHVTDMSWGRLGHPSEILKPGDKLNVKVLKYDQEKGKIS 281

Query: 685 LSMKVVDQNTG 695
           L +K V  +  
Sbjct: 282 LGLKQVTPDPW 292



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   S+          KG+VV + D+GAF+      +GLVH+S++S   R+   S+++  
Sbjct: 290 DPWVSVEQKYNQGDRVKGKVVSLTDYGAFIALEDGVEGLVHVSEMSWTRRLRHPSEILTV 349

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V   +L  D    +I L +K V  N  
Sbjct: 350 GDEVETVVLGVDMGNRRISLGLKQVQVNPW 379



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I           G+V  V DFG F+      +GL+H+S+LS E+VA   +    G
Sbjct: 464 DPWSEIPVKYRPGTRVHGKVTSVTDFGVFLEIEEGIEGLIHVSELSREKVASPKEFTNVG 523

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVD 691
           D +   +L  D+   KI LS+K + 
Sbjct: 524 DELDAVVLSVDESEKKIALSIKSLQ 548



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +   V    +GQ+  + DFG F+      DGLVH+S +S  +R+    +V  +G
Sbjct: 378 PWTQLEEKYPVGTKLEGQIKSITDFGVFIGIEEGIDGLVHVSDISWTKRIKHPGEVFTKG 437

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
            TV   +L+ D    ++ L +K +  +    I
Sbjct: 438 QTVQAVVLNIDPENERLSLGIKQLLLDPWSEI 469


>gi|239825642|ref|YP_002948266.1| hypothetical protein GWCH70_0058 [Geobacillus sp. WCH70]
 gi|239805935|gb|ACS23000.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 132

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLRGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDIVNVKVINV 63

Query: 678 DDRGKIKLSMKVVD--QNTGKP 697
           +  GKI LS+K     Q + +P
Sbjct: 64  EKDGKIGLSIKKAKDTQPSQRP 85


>gi|153815704|ref|ZP_01968372.1| hypothetical protein RUMTOR_01941 [Ruminococcus torques ATCC 27756]
 gi|145846945|gb|EDK23863.1| hypothetical protein RUMTOR_01941 [Ruminococcus torques ATCC 27756]
          Length = 717

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKG 625
           +G+G   +R IV++             K A     E+               +   I KG
Sbjct: 602 LGIGEITLRDIVKELE-----------KPARDPRDEMPKPILRTDVLEMKDLKEGMILKG 650

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFG FV     +DGLVHISQ++   +    + V  GD V VK++  D  + +I+
Sbjct: 651 TVRNVIDFGVFVDIGVHQDGLVHISQITDRYIKHPLEAVSVGDVVDVKVMSVDMKKKRIQ 710

Query: 685 LSMKVV 690
           L+M+ +
Sbjct: 711 LTMRGI 716


>gi|114778276|ref|ZP_01453135.1| probable transcriptional accessory protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551378|gb|EAU53934.1| probable transcriptional accessory protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 825

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS L+ + +     VVK G+ V VK+L+ D  
Sbjct: 665 MILEGVVTNVANFGAFVDIGVHQDGLVHISALTHQFIDDPRKVVKTGEVVQVKVLEVDAR 724

Query: 680 RGKIKLSMKVVD 691
           R +I L+M++ D
Sbjct: 725 RKRISLTMRMDD 736


>gi|237749145|ref|ZP_04579625.1| small subunit ribosomal protein S1 [Oxalobacter formigenes OXCC13]
 gi|229380507|gb|EEO30598.1| small subunit ribosomal protein S1 [Oxalobacter formigenes OXCC13]
          Length = 568

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 85/212 (40%), Gaps = 11/212 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +  +      G T +  D      S   +  A++  +     +  ++   L+    
Sbjct: 76  DYVSVAIESLENGYGDTILSRDKAKRLASWLALEKAMESGEIVTGTVNGKVKGGLTVLTN 135

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   +   P   +++     GK +   V +   K N      V ++  ++ E  
Sbjct: 136 GIRAFLPGSLVDTRP---VKDTTPYEGKTLEFKVIKLDRKRN-----NVVLSRRAVVEAS 187

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +  + E   I  G V  + D+GAF+   G  DGL+HI+ L+  RV   S+++
Sbjct: 188 MGEERQKLMETLKEG-TIVNGVVKNITDYGAFIDL-GGIDGLLHITDLAWRRVRHPSEML 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  +  K+L +D ++ ++ L +K +  +  
Sbjct: 246 TVGQEITAKVLKYDQEKNRVSLGVKQLGDDPW 277



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + VVK GD V V +L+ D +R +
Sbjct: 292 GKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVKLGDEVEVMVLEIDEERRR 351

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 352 ISLGMKQCKANPWEE 366



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           +  G V  V   GA +      +G +  S++S +RV      +K  D V V +++ D + 
Sbjct: 463 VVNGVVKSVEPKGAVIQLNDEVEGYLRASEISRDRVEDAGTQLKVDDKVEVMIINIDRKS 522

Query: 682 K-IKLSMKVVDQNTGKP 697
           + ++LS+K  DQ   + 
Sbjct: 523 RTLQLSIKAKDQQETQE 539



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID++           +            +  +      G +  + DFG F+   G  D
Sbjct: 343 LEIDEERRRISLGMKQCKAN----PWEEFAETHKKGDKVNGAIKSITDFGVFIGLPGNID 398

Query: 645 GLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +T+    K+GD +   +L  D +R ++ L +K ++ + 
Sbjct: 399 GLVHLSDLSWTEAGETAVHNFKKGDELEAVVLAIDVERERVSLGVKQLEGDP 450


>gi|229550028|ref|ZP_04438753.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200]
 gi|255972809|ref|ZP_05423395.1| SSU ribosomal protein S1P [Enterococcus faecalis T1]
 gi|257422631|ref|ZP_05599621.1| 30S ribosomal protein S1 [Enterococcus faecalis X98]
 gi|312951481|ref|ZP_07770377.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102]
 gi|229304834|gb|EEN70830.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200]
 gi|255963827|gb|EET96303.1| SSU ribosomal protein S1P [Enterococcus faecalis T1]
 gi|257164455|gb|EEU94415.1| 30S ribosomal protein S1 [Enterococcus faecalis X98]
 gi|310630447|gb|EFQ13730.1| putative ribosomal protein S1 [Enterococcus faecalis TX0102]
 gi|315152496|gb|EFT96512.1| putative ribosomal protein S1 [Enterococcus faecalis TX0031]
 gi|315155774|gb|EFT99790.1| putative ribosomal protein S1 [Enterococcus faecalis TX0043]
 gi|315158059|gb|EFU02076.1| putative ribosomal protein S1 [Enterococcus faecalis TX0312]
 gi|315169715|gb|EFU13732.1| putative ribosomal protein S1 [Enterococcus faecalis TX1342]
          Length = 403

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S               +        + +G+V ++ DFGAF+   G  D
Sbjct: 170 IEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDL-GGVD 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S+++ + V K SD +  G+ V VK+L  + D G+I LS+K         I
Sbjct: 229 GLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPDEGRISLSIKETLPGPWTDI 283



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + +
Sbjct: 291 TVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPE 350

Query: 680 RGKIKLSMKVVDQ 692
             +I LS+K ++ 
Sbjct: 351 EHRIALSIKALEP 363



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           +              E   +      V  I KG+V+ + D    V   G   +G+V   +
Sbjct: 1   MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE 60

Query: 652 LSTERVAKTSDVVKEGDTVW-VKLLDF---DDRGKIKLSMKVVD 691
           LST  V    ++VK GD +  V +       + G   LS + +D
Sbjct: 61  LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLD 104


>gi|332298351|ref|YP_004440273.1| ribosomal protein S1 [Treponema brennaborense DSM 12168]
 gi|332181454|gb|AEE17142.1| ribosomal protein S1 [Treponema brennaborense DSM 12168]
          Length = 572

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      D   VN + KG+V K+ DFGAF+      +GL HIS+ S  +++ K SD+VK 
Sbjct: 277 DPWLHFEDKYHVNDVVKGRVTKLTDFGAFIELEEGIEGLAHISEFSWVKKINKASDMVKI 336

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V   +L +D   G++ L +K V  N  
Sbjct: 337 GDEVECMVLGYDIQAGRVSLGLKQVTNNPW 366



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 12/152 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIG-MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           +  F P  +  +   ++   ++G      I  +     A V       V         +E
Sbjct: 138 IHAFLPISQSDSQKVEKSEKLLGVKSQFYIERLYSDNKANV------VVNRRKYLEESME 191

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             RE          +    KG V     FGAF+   G  DGL+HI+ +S   V +  D V
Sbjct: 192 TNREKFFETIS---IGDTVKGAVKSFTSFGAFIDLGGF-DGLLHINDMSWGHVTRPKDFV 247

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           K+G  + +K++  D    +I LS+K   ++  
Sbjct: 248 KKGQEIELKVIRLDPAEKRINLSLKHFSEDPW 279



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ +   V      +VVKV + GAF+      DG +H   LS  ++V      +  G
Sbjct: 365 PWDAVAEKYPVGTRLTRKVVKVTNVGAFIELEEGIDGFLHADDLSWTKKVKHPGSELSVG 424

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             +   +++ D +  +I+L +K +  +  +
Sbjct: 425 QEIETVVIESDPESHRIRLGVKQLSDDPWQ 454



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK-- 665
           +  +      +     +G++V + DFG FV   G  +GLV+ + LS  R     + VK  
Sbjct: 451 DPWQQFCLAYKPGSTLEGEIVSITDFGLFVRAPGGIEGLVNKANLSDNRDEPYEEAVKKY 510

Query: 666 -EGDTVWVKLLDFD-DRGKIKLSMKV 689
             GD V V ++D + ++ K+  S+K 
Sbjct: 511 AVGDKVNVYVVDVNPEKQKVAFSVKE 536


>gi|317478706|ref|ZP_07937860.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316905136|gb|EFV26936.1| tex-like protein domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 704

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 14/164 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M+K L  S  +L     R   + I P++  +   +G   ++ I+++   K   D  
Sbjct: 554 IVEQMAKDLDCSVAEL--IASRELRLKINPERYLSPT-VGMPTLKDILQELD-KPGRDPR 609

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +K        I    + +R+I D+ E  ++  G V  + +FGAFV      +GLVH+S
Sbjct: 610 GPIK--------IFEFDKNVRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           QL+   ++  ++VV     + VK+L  D DR +I+L+MK V+QN
Sbjct: 661 QLADRFISDPNEVVSIHQHIRVKVLSIDMDRKRIQLTMKGVEQN 704


>gi|325922079|ref|ZP_08183873.1| ribosomal protein S1 [Xanthomonas gardneri ATCC 19865]
 gi|325547416|gb|EGD18476.1| ribosomal protein S1 [Xanthomonas gardneri ATCC 19865]
          Length = 358

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I      N    G+V  V D+GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 62  DPWDNIARRYPANSRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQV 121

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L MK V  N  +
Sbjct: 122 GDEVEVMVLDVDEERRRISLGMKQVAANPWE 152



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           D+GAFV   G  DGL+HI+ ++ +RV   S+VV  GD + V++L FD +R ++ L +K +
Sbjct: 1   DYGAFVDL-GGIDGLLHITDMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLKQL 59

Query: 691 DQNTGKPIV 699
            ++    I 
Sbjct: 60  GEDPWDNIA 68



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P ++  V    G  +  +V      +++D++               A     +     
Sbjct: 113 VNPSKVVQV----GDEVEVMV------LDVDEERRRISLGMKQV----AANPWETFAATH 158

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + N    GQ+  + DFG F+   G  DGLVH+S +S        DVV   K+GDT+   +
Sbjct: 159 KKNDKVSGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTG--EDVVRNYKKGDTLEAVV 216

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D +R +I L +K ++Q+ 
Sbjct: 217 LAVDPERERISLGVKQLEQDP 237



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + +   P+ +K+ +G V +V   GA +      +G V    ++ ERV   +  +K GD +
Sbjct: 240 QYMASNPKGSKV-EGVVREVDAKGATIDLADGIEGYVAARDIANERVDDATQHLKVGDKI 298

Query: 671 WVKLLDFDDRGK-IKLSMKVVD 691
             K +  D +G+ ++LS+K  D
Sbjct: 299 EAKFVGMDRKGRTLQLSIKAKD 320


>gi|559914|emb|CAA86365.1| 30S ribosomal protein S1 [Mycobacterium leprae]
          Length = 482

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFG 634
            I ++  AK+   D     +  S  A +E  +  +RS   +  +   I KG V  +++FG
Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 223

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             V   G  DGLVH+S+LS + +   S+VV+ G+ V V++LD D DR ++ LS+K   ++
Sbjct: 224 C-VCRSGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQED 282

Query: 694 TGK 696
             +
Sbjct: 283 PWR 285



 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV  G
Sbjct: 282 DPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D   VK++D D +R +I LS+K   
Sbjct: 342 DDAMVKVIDIDLERRRISLSLKADQ 366



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|319788548|ref|YP_004148023.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317467060|gb|ADV28792.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 787

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 19/150 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           +  ++   GK ++ I+  +        +   D+   V      L E+E      R     
Sbjct: 582 VERILAGSGKQVKQIIGDSAFLRSLKPEQFTDEKFGVPTVRDILKELEKPGRDPRPEFKA 641

Query: 617 PEVNK------------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            +  +            + +G V  V  FGAFV     +DGLVHIS LS   V    DVV
Sbjct: 642 AKFAEGVEDIKDLRPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSERYVKDPRDVV 701

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           K GD V VK+L+ D  R +I L+ ++ D+ 
Sbjct: 702 KAGDIVKVKVLEVDVARKRIALTCRMSDEP 731


>gi|229816713|ref|ZP_04446999.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
           13280]
 gi|229807689|gb|EEP43505.1| hypothetical protein COLINT_03759 [Collinsella intestinalis DSM
           13280]
          Length = 810

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG V  V+DFGAFV     +DGLVHIS+L+   V   S+VV  GDTV V +   
Sbjct: 733 EVGMELKGTVRNVVDFGAFVDIGVHQDGLVHISKLADRFVKHPSEVVAVGDTVTVWITGV 792

Query: 678 DD-RGKIKLSM 687
           D  RGKI L+M
Sbjct: 793 DKARGKISLTM 803


>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
          Length = 248

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 75/185 (40%), Gaps = 26/185 (14%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           ++ R DGR+   +R  S     L R HGS+ + +GDT  ++    G +       +  G 
Sbjct: 2   EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDT-IVLAAVYGPK-----PGTRKGE 55

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 +   + P         G   ++E  +    +R +  +   T     T  ++ ++
Sbjct: 56  NPEKASIEVVWKP-------MTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108

Query: 430 TESDGSSSMA-----TVCGSSL-----ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
             +DGS S       ++    L     +L+ AG+P+      I  G+++DG+   ++ D 
Sbjct: 109 VGNDGSVSFCRNVLLSIVSGCLLDYEHSLVFAGIPLKHLAVAIGCGVLEDGE---VILDT 165

Query: 480 SGDED 484
           +  E+
Sbjct: 166 NKAEE 170



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 32/161 (19%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G+T+VLA V   +      +  +   + V ++  T  +GK           
Sbjct: 27  AHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGK----------- 75

Query: 84  PTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH--VVSMVAASA--- 136
             E E  ++  + R+++   L +      T VI+ V+ +D   S    V+  + +     
Sbjct: 76  -QEKEYEMT--LKRTLQSICLLTVHPNTTTSVILQVVGNDGSVSFCRNVLLSIVSGCLLD 132

Query: 137 ---ALMLSGLPFEGPVVGAQVD---YINGQYVLNPRLDEDQ 171
              +L+ +G+P +       +      +G+ +L+    E+Q
Sbjct: 133 YEHSLVFAGIPLKHL--AVAIGCGVLEDGEVILDTNKAEEQ 171


>gi|149182576|ref|ZP_01861047.1| hypothetical protein BSG1_13331 [Bacillus sp. SG-1]
 gi|148849712|gb|EDL63891.1| hypothetical protein BSG1_13331 [Bacillus sp. SG-1]
          Length = 147

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    KG+V  + +FGAFV       GLVHIS+++   V   +D +K GD V VK++  
Sbjct: 4   EIGSKVKGKVTGITNFGAFVELPEGSTGLVHISEVADSYVKDVNDHLKVGDEVEVKVIS- 62

Query: 678 DDRGKIKLSM-KVVDQNTG 695
           ++ GKI LS+ K VD+  G
Sbjct: 63  ENAGKIALSIKKAVDKPEG 81


>gi|240137316|ref|YP_002961785.1| transcriptional accessory protein [Methylobacterium extorquens AM1]
 gi|240007282|gb|ACS38508.1| transcriptional accessory protein [Methylobacterium extorquens AM1]
          Length = 771

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  
Sbjct: 649 KPGMQLEGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSV 708

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D  R +I LSM++ D   G
Sbjct: 709 DVPRKRIALSMRLDDPLEG 727


>gi|288960277|ref|YP_003450617.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510]
 gi|288912585|dbj|BAI74073.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510]
          Length = 784

 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E +  +  +     + +G V  V  FGAFV     +DGLVHISQL+   V     VVK 
Sbjct: 636 KEGVEELKHLQPGMML-EGVVTNVTAFGAFVDIGVHQDGLVHISQLANSFVKDPHTVVKA 694

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKV 689
           GD V VK+L+ D  R ++ L+M++
Sbjct: 695 GDVVKVKVLEVDIPRKRVALTMRM 718


>gi|329571715|gb|EGG53396.1| putative ribosomal protein S1 [Enterococcus faecalis TX1467]
          Length = 403

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S               +        + +G+V ++ DFGAF+   G  D
Sbjct: 170 IEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDL-GGVD 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S+++ + V K SD +  G+ V VK+L  + + G+I LS+K         I
Sbjct: 229 GLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDI 283



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + +
Sbjct: 291 TVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPE 350

Query: 680 RGKIKLSMKVVDQ 692
             +I LS+K ++ 
Sbjct: 351 EHRIALSIKALEP 363



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           +              E   +      V  I KG+V+ + D    V   G   +G+V   +
Sbjct: 1   MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE 60

Query: 652 LSTERVAKTSDVVKEGDTVW-VKLLDF---DDRGKIKLSMKVVD 691
           LST  +    ++VK GD +  V +       + G   LS + +D
Sbjct: 61  LSTLPIEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLD 104


>gi|316932054|ref|YP_004107036.1| Tex-like protein protein-like protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599768|gb|ADU42303.1| Tex-like protein protein-like protein [Rhodopseudomonas palustris
           DX-1]
          Length = 778

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   I +  +  V  FGAF      +DG
Sbjct: 618 DILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATITNVAAFGAFADIGVHQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           L+HIS +S  R+    +VVK G  V VK+L+ D  R +I L++++ D    
Sbjct: 678 LIHISAMSERRINDPREVVKPGQVVKVKVLEVDVPRNRIGLTLRMSDPIPA 728


>gi|163793689|ref|ZP_02187663.1| Ribosomal protein S1 [alpha proteobacterium BAL199]
 gi|159180800|gb|EDP65317.1| Ribosomal protein S1 [alpha proteobacterium BAL199]
          Length = 568

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A      +  + E   +  G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRAVLEESRAEARSELVASLKEG-MVLSGVVKNITDYGAFVDL-GGVDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++  R+   ++ ++ G TV V+++ F+ +  +I L MK ++ +  +
Sbjct: 228 DIAWRRINHPTEALQIGQTVKVQVIRFNSETQRISLGMKQLEADPWE 274



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 271 DPWEGVDVKYPVGTKFTGRVTNITDYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVST 330

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              V V +LD D ++ +I L +K    N    
Sbjct: 331 SQEVEVMILDVDPNKRRISLGLKQCMGNPWDE 362



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
                          +G+V  + +FG FV   G  DG+VH+S +  E    +     K+G
Sbjct: 359 PWDEFASKYPTGTEIEGEVKNITEFGLFVGLPGDIDGMVHLSDIDWEIPGEEAIQSFKKG 418

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V +K+LD D D+ +I L +K +  + 
Sbjct: 419 DMVKIKVLDVDTDKERISLGIKQLTSDP 446



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
            G + I+   +    K+ + D  T K   S   +   +         + +   +    V 
Sbjct: 407 PGEEAIQSFKKGDMVKIKVLDVDTDKERISLGIKQLTSDPFTSGAASLKKGV-VVTCTVT 465

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
           ++ + G  V       G +  + LS ER  +  +    G+ V  K+ + D +  K+ LS+
Sbjct: 466 QITEGGIEVQLSDGMTGFIRKTDLSRERSEQRPERFAVGEKVDAKVTNIDAKSRKVTLSI 525

Query: 688 KV 689
           K 
Sbjct: 526 KA 527


>gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 [Enterococcus faecalis V583]
 gi|227518739|ref|ZP_03948788.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104]
 gi|227553349|ref|ZP_03983398.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22]
 gi|229545836|ref|ZP_04434561.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322]
 gi|255975865|ref|ZP_05426451.1| SSU ribosomal protein S1P [Enterococcus faecalis T2]
 gi|256619051|ref|ZP_05475897.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200]
 gi|256762477|ref|ZP_05503057.1| SSU ribosomal protein S1P [Enterococcus faecalis T3]
 gi|256853113|ref|ZP_05558483.1| ribosomal protein S1 [Enterococcus faecalis T8]
 gi|256958968|ref|ZP_05563139.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5]
 gi|256961939|ref|ZP_05566110.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96]
 gi|256965137|ref|ZP_05569308.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704]
 gi|257078999|ref|ZP_05573360.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1]
 gi|257082562|ref|ZP_05576923.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol]
 gi|257085195|ref|ZP_05579556.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1]
 gi|257086756|ref|ZP_05581117.1| SSU ribosomal protein S1P [Enterococcus faecalis D6]
 gi|257089873|ref|ZP_05584234.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188]
 gi|257419284|ref|ZP_05596278.1| 30S ribosomal protein S1P [Enterococcus faecalis T11]
 gi|293383007|ref|ZP_06628925.1| ribosomal protein S1 [Enterococcus faecalis R712]
 gi|293389504|ref|ZP_06633961.1| ribosomal protein S1 [Enterococcus faecalis S613]
 gi|294781351|ref|ZP_06746694.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1]
 gi|307271030|ref|ZP_07552313.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248]
 gi|307273237|ref|ZP_07554483.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855]
 gi|307274974|ref|ZP_07556137.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134]
 gi|307278086|ref|ZP_07559170.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860]
 gi|307289093|ref|ZP_07569049.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109]
 gi|307292008|ref|ZP_07571877.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411]
 gi|312900748|ref|ZP_07760045.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470]
 gi|312903295|ref|ZP_07762475.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635]
 gi|312907522|ref|ZP_07766513.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512]
 gi|312910140|ref|ZP_07768987.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516]
 gi|29343573|gb|AAO81335.1| ribosomal protein S1 [Enterococcus faecalis V583]
 gi|227073820|gb|EEI11783.1| 30S ribosomal protein S1 [Enterococcus faecalis TX0104]
 gi|227177518|gb|EEI58490.1| 30S ribosomal protein S1 [Enterococcus faecalis HH22]
 gi|229309035|gb|EEN75022.1| 30S ribosomal protein S1 [Enterococcus faecalis TX1322]
 gi|255968737|gb|EET99359.1| SSU ribosomal protein S1P [Enterococcus faecalis T2]
 gi|256598578|gb|EEU17754.1| SSU ribosomal protein S1P [Enterococcus faecalis ATCC 4200]
 gi|256683728|gb|EEU23423.1| SSU ribosomal protein S1P [Enterococcus faecalis T3]
 gi|256711572|gb|EEU26610.1| ribosomal protein S1 [Enterococcus faecalis T8]
 gi|256949464|gb|EEU66096.1| SSU ribosomal protein S1P [Enterococcus faecalis DS5]
 gi|256952435|gb|EEU69067.1| 30S ribosomal protein S1P [Enterococcus faecalis Merz96]
 gi|256955633|gb|EEU72265.1| 30S ribosomal protein S1P [Enterococcus faecalis HIP11704]
 gi|256987029|gb|EEU74331.1| 30S ribosomal protein S1P [Enterococcus faecalis JH1]
 gi|256990592|gb|EEU77894.1| SSU ribosomal protein S1P [Enterococcus faecalis E1Sol]
 gi|256993225|gb|EEU80527.1| 30S ribosomal protein S1 [Enterococcus faecalis Fly1]
 gi|256994786|gb|EEU82088.1| SSU ribosomal protein S1P [Enterococcus faecalis D6]
 gi|256998685|gb|EEU85205.1| 30S ribosomal protein S1P [Enterococcus faecalis CH188]
 gi|257161112|gb|EEU91072.1| 30S ribosomal protein S1P [Enterococcus faecalis T11]
 gi|291079672|gb|EFE17036.1| ribosomal protein S1 [Enterococcus faecalis R712]
 gi|291081121|gb|EFE18084.1| ribosomal protein S1 [Enterococcus faecalis S613]
 gi|294451581|gb|EFG20040.1| 30S ribosomal protein S1 [Enterococcus faecalis PC1.1]
 gi|295112972|emb|CBL31609.1| SSU ribosomal protein S1P [Enterococcus sp. 7L76]
 gi|306497006|gb|EFM66554.1| putative ribosomal protein S1 [Enterococcus faecalis TX0411]
 gi|306499802|gb|EFM69163.1| putative ribosomal protein S1 [Enterococcus faecalis TX0109]
 gi|306505483|gb|EFM74669.1| putative ribosomal protein S1 [Enterococcus faecalis TX0860]
 gi|306508422|gb|EFM77529.1| putative ribosomal protein S1 [Enterococcus faecalis TX2134]
 gi|306510222|gb|EFM79246.1| putative ribosomal protein S1 [Enterococcus faecalis TX0855]
 gi|306512528|gb|EFM81177.1| putative ribosomal protein S1 [Enterococcus faecalis TX4248]
 gi|310626550|gb|EFQ09833.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 512]
 gi|310633171|gb|EFQ16454.1| putative ribosomal protein S1 [Enterococcus faecalis TX0635]
 gi|311289413|gb|EFQ67969.1| putative ribosomal protein S1 [Enterococcus faecalis DAPTO 516]
 gi|311292229|gb|EFQ70785.1| putative ribosomal protein S1 [Enterococcus faecalis TX0470]
 gi|315027278|gb|EFT39210.1| putative ribosomal protein S1 [Enterococcus faecalis TX2137]
 gi|315029397|gb|EFT41329.1| putative ribosomal protein S1 [Enterococcus faecalis TX4000]
 gi|315033957|gb|EFT45889.1| putative ribosomal protein S1 [Enterococcus faecalis TX0017]
 gi|315036966|gb|EFT48898.1| putative ribosomal protein S1 [Enterococcus faecalis TX0027]
 gi|315147252|gb|EFT91268.1| putative ribosomal protein S1 [Enterococcus faecalis TX4244]
 gi|315150549|gb|EFT94565.1| putative ribosomal protein S1 [Enterococcus faecalis TX0012]
 gi|315164002|gb|EFU08019.1| putative ribosomal protein S1 [Enterococcus faecalis TX1302]
 gi|315169047|gb|EFU13064.1| putative ribosomal protein S1 [Enterococcus faecalis TX1341]
 gi|315172324|gb|EFU16341.1| putative ribosomal protein S1 [Enterococcus faecalis TX1346]
 gi|315575879|gb|EFU88070.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309B]
 gi|315577719|gb|EFU89910.1| putative ribosomal protein S1 [Enterococcus faecalis TX0630]
 gi|315580531|gb|EFU92722.1| putative ribosomal protein S1 [Enterococcus faecalis TX0309A]
 gi|323480711|gb|ADX80150.1| 30S ribosomal protein S1-like protein [Enterococcus faecalis 62]
 gi|327535120|gb|AEA93954.1| 30S ribosomal protein S1 [Enterococcus faecalis OG1RF]
          Length = 403

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S               +        + +G+V ++ DFGAF+   G  D
Sbjct: 170 IEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDL-GGVD 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S+++ + V K SD +  G+ V VK+L  + + G+I LS+K         I
Sbjct: 229 GLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDI 283



 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + +
Sbjct: 291 TVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPE 350

Query: 680 RGKIKLSMKVVDQ 692
             +I LS+K ++ 
Sbjct: 351 EHRIALSIKALEP 363



 Score = 40.7 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           +              E   +      V  I KG+V+ + D    V   G   +G+V   +
Sbjct: 1   MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE 60

Query: 652 LSTERVAKTSDVVKEGDTVW-VKLLDF---DDRGKIKLSMKVVD 691
           LST  V    ++VK GD +  V +       + G   LS + +D
Sbjct: 61  LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLD 104


>gi|254993213|ref|ZP_05275403.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-064]
          Length = 381

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 262 PWDGIAEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQ 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           TV VK+L+ ++   ++ LS+K +     + 
Sbjct: 322 TVEVKVLEVNEADKRLSLSIKELKDAPVEE 351



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   + ++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIKATLPGPW 263



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V   G++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDILV-LSKRKVDAE 89


>gi|56962592|ref|YP_174318.1| transcriptional accessory protein [Bacillus clausii KSM-K16]
 gi|56908830|dbj|BAD63357.1| transcriptional accessory protein [Bacillus clausii KSM-K16]
          Length = 720

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D                  +      +  E     +G V  ++DFGAFV     +DG
Sbjct: 612 DIIDALARPNRDPRDELAAPQLKQDVLKMEDLEKGMELQGTVRNIVDFGAFVDIGVKQDG 671

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           LVH+S+LS   +    +VV  GD V V + D D+ +G+I L+MK 
Sbjct: 672 LVHVSKLSDRYIKHPMEVVSIGDVVTVWVEDVDEKKGRISLTMKA 716


>gi|114762771|ref|ZP_01442205.1| S1 RNA binding domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114544681|gb|EAU47687.1| S1 RNA binding domain protein [Roseovarius sp. HTCC2601]
          Length = 771

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  ITD+     + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 637 EGVEQITDLKPGMSL-EGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 695

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV----DQNTGKP 697
           D V V++ + D  R +I LSM+       +  GKP
Sbjct: 696 DVVRVRVTEVDVPRKRIGLSMRKDGGGKPERGGKP 730


>gi|148653919|ref|YP_001281012.1| RNA-binding S1 domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148573003|gb|ABQ95062.1| RNA binding S1 domain protein [Psychrobacter sp. PRwf-1]
          Length = 849

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +              A      +     E     +G V  V  FG FV     +DGL
Sbjct: 664 IKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQDGL 723

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VHIS+++ + V    ++VK GD V V+++  D  R +I  SMK  D  + K
Sbjct: 724 VHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAK 774


>gi|254509538|ref|ZP_05121605.1| ribosomal protein S1 [Rhodobacteraceae bacterium KLH11]
 gi|221533249|gb|EEE36237.1| ribosomal protein S1 [Rhodobacteraceae bacterium KLH11]
          Length = 553

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   + +G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLSEGQTV-EGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQEDPW 266



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  +++G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVAAKYPLGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVDVMVLEIDGAKRRVSLGLKQTQRNPWE 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
            R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER        
Sbjct: 349 QRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNY 408

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           ++GD V   + + D ++ +I LS+K +
Sbjct: 409 RKGDVVQAVVSEVDVEKERISLSIKAL 435



 Score = 51.8 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSIVTVNVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 529


>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
 gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
          Length = 260

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 97/261 (37%), Gaps = 24/261 (9%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V   ++   V  +ML K+ R D R  + +RDIS +  ++    GS+    GDTQ IV 
Sbjct: 3   SEVMSKLKKDYVYHLML-KEKREDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVG 61

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V L  +  E + D+     +   +      P A+ +    G P    I   R+  R I  
Sbjct: 62  VKL--QVGEPFPDT---PDKGIIITSLELNPIASPDFEA-GPPKEDAIEIARVVDRGIRE 115

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP--------- 454
                   +     +  +T+ I   +   DG+   A   G+  ALM   +P         
Sbjct: 116 SGAIDLNKLCITEGEEVWTVFIDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGED 175

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +  PV  I +G+        ++ D + +E+ +      V     G  +       G ++E
Sbjct: 176 MMMPVRDIPVGISLVDISGELMVDPTYNEESVCDTKITVVSNQDGSISAMQKSGTGSLTE 235

Query: 515 NIMVMALQQAKRGRLHILNEM 535
             ++ A   A+     I  + 
Sbjct: 236 EKVLQAANIARTRASEIREKY 256



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 39/230 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           R + +ET  I   ++G+    +G+T ++  V   V +    D  D   +  + +    A 
Sbjct: 33  RDISIETDIIG-NAEGSAKVYWGDTQLIVGVKLQVGEPFP-DTPDKGIIITSLELNPIAS 90

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQH 120
                G       P E+ I I+R++DR IR       +K    E        + +NV+  
Sbjct: 91  PDFEAGP------PKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEVWTVFIDVNVLND 144

Query: 121 DLESSPHVVSMVAASAALMLSGLP---------FEGPVVGAQVD----YINGQYVLNPRL 167
           D        + + A AALM + +P            PV    V      I+G+ +++P  
Sbjct: 145 DGNIM--DAASIGAIAALMTTNIPAESEGYGEDMMMPVRDIPVGISLVDISGELMVDPTY 202

Query: 168 DEDQG-SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPV 214
           +E+      + V   QD  +          L+E+ VL A          +
Sbjct: 203 NEESVCDTKITVVSNQDGSISAMQKSGTGSLTEEKVLQAANIARTRASEI 252


>gi|295694771|ref|YP_003588009.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
 gi|295410373|gb|ADG04865.1| RNA binding S1 domain protein [Bacillus tusciae DSM 2912]
          Length = 141

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 43/80 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+    +G+V  +  FGAFV   G   GLVHIS+++   V    D +K  DTV VK++  
Sbjct: 4   ELGSKLEGKVTGITHFGAFVLLPGGVTGLVHISEIADTYVRDIRDYLKINDTVTVKVIHV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D  GKI LS++   + +   
Sbjct: 64  DPNGKIGLSIRQAKEGSAAE 83


>gi|163850246|ref|YP_001638289.1| RNA-binding S1 domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163661851|gb|ABY29218.1| RNA binding S1 domain protein [Methylobacterium extorquens PA1]
          Length = 771

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  D  R 
Sbjct: 654 LEGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSVDVPRK 713

Query: 682 KIKLSMKVVDQNTG 695
           +I LSM++ D   G
Sbjct: 714 RIALSMRLDDPLEG 727


>gi|46908171|ref|YP_014560.1| 30S ribosomal protein S1 [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224542|ref|YP_002758649.1| hypothetical protein Lm4b_01955 [Listeria monocytogenes Clip81459]
 gi|254825567|ref|ZP_05230568.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-194]
 gi|254852840|ref|ZP_05242188.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-503]
 gi|254931891|ref|ZP_05265250.1| 30S ribosomal protein S1 [Listeria monocytogenes HPB2262]
 gi|255521524|ref|ZP_05388761.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-175]
 gi|300763752|ref|ZP_07073749.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N1-017]
 gi|46881441|gb|AAT04737.1| putative ribosomal protein S1 [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|225877004|emb|CAS05713.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606170|gb|EEW18778.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL R2-503]
 gi|293583443|gb|EFF95475.1| 30S ribosomal protein S1 [Listeria monocytogenes HPB2262]
 gi|293594810|gb|EFG02571.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J1-194]
 gi|300515488|gb|EFK42538.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL N1-017]
 gi|328466286|gb|EGF37443.1| 30S ribosomal protein S1 [Listeria monocytogenes 1816]
 gi|328472781|gb|EGF43630.1| 30S ribosomal protein S1 [Listeria monocytogenes 220]
 gi|332312378|gb|EGJ25473.1| 30S ribosomal protein S1 [Listeria monocytogenes str. Scott A]
          Length = 381

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 262 PWDGIAEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQ 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           TV VK+L+ ++   ++ LS+K +     + 
Sbjct: 322 TVEVKVLEVNEADKRLSLSIKELKDAPVEE 351



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + +     G  +   V +        ++  V ++  ++ E E A +    ++++ E  
Sbjct: 135 HFVEDFADYKGTTLTFKVVEFEP-----ENNRVILSHRAVVETEKASQKQALLSEIKEG- 188

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G V ++ +FGAFV   G  DGLVHISQ+S + +A   + ++EG  V VK++  D  
Sbjct: 189 DVIEGTVQRLANFGAFVDI-GGVDGLVHISQISYKHIATPQEALEEGQKVTVKVIGIDPE 247

Query: 681 G-KIKLSMKVVDQNTG 695
             +I LS+K       
Sbjct: 248 NERISLSIKATLPGPW 263



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V   G++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDILV-LSKRKVDAE 89


>gi|239948027|ref|ZP_04699780.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922303|gb|EER22327.1| ribosomal protein S1 [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 568

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++  ++ E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S++++    V V +
Sbjct: 201 KIKEG-MVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEMLEFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N  + I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWEAI 283



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +        +  G
Sbjct: 279 PWEAIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           V  + K  +  + DF  FV      DG++H S +S E   K +D++   K+GD +  K+L
Sbjct: 376 VGTVIKAPIRNITDFSIFVALGNNMDGMIHESDISWE--DKGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             + ++ ++ L +K +  N  + I
Sbjct: 434 AINIEKEQVSLGIKQLSPNPYQEI 457


>gi|308801349|ref|XP_003077988.1| Polyribonucleotide nucleotidyltransferase (ISS) [Ostreococcus
           tauri]
 gi|116056439|emb|CAL52728.1| Polyribonucleotide nucleotidyltransferase (ISS) [Ostreococcus
           tauri]
          Length = 126

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           M+ ++T   EV KIY+   VK +++FG FV F    +GLVHIS+L   RV   SDV  EG
Sbjct: 1   MVAALTVEAEVGKIYRNCQVKKIVEFGCFVEFLPGMEGLVHISELDVSRVPNVSDVTAEG 60

Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690
             + VK+++ ++RG+ +LS K V
Sbjct: 61  ALLDVKVIEINNRGQTRLSRKEV 83


>gi|325283233|ref|YP_004255774.1| RNA binding S1 domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324315042|gb|ADY26157.1| RNA binding S1 domain protein [Deinococcus proteolyticus MRP]
          Length = 125

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G++ +V DFGAFV F     GLVHISQ++   V    D V+EG+ V VK+L  D+RG
Sbjct: 8   VIEGRITRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGENVEVKVLGRDERG 67

Query: 682 KIKLSMK 688
           ++ LS+K
Sbjct: 68  RLDLSIK 74


>gi|227872165|ref|ZP_03990534.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
 gi|227841994|gb|EEJ52255.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
          Length = 367

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 20/206 (9%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
           ++I  +  +     R  I +    + +  + Q  +    ++   I    ++N+   G  +
Sbjct: 152 QDIQFVITEFNPAKRRIIGDRKQIMSAMKKEQHDKLFSELKEGDIRTGVVKNLTDFGAFI 211

Query: 574 -------IRGIVEQTGAKVNID-------DDGTVKIASSSLAEIEAAREMIRSITDV--- 616
                  +  I E +  ++           +  V +   S   I   R+           
Sbjct: 212 DLGGADGLLHISEMSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAE 271

Query: 617 --PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               V +I  G+V ++ DFGAF+      D L+H+SQ+S + V K SDV++ G  +  ++
Sbjct: 272 SKYAVGEIVTGRVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARV 331

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +D D D  KI LS+K +       + 
Sbjct: 332 VDLDVDNHKISLSIKALLPEEEGDVA 357



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I  G V+ V      ++     DG++  S  S +     + VV  G
Sbjct: 8   QMLEESLKSVHAGEIVTGTVISVKPDEIALNIGYKSDGIMTRSDYSADNQLDLTTVVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQN 693
           D +  K+    D  G++ LS +   Q+
Sbjct: 68  DEIECKVKKVNDGEGQVVLSHRDALQS 94


>gi|261880726|ref|ZP_06007153.1| 30S ribosomal protein S1 [Prevotella bergensis DSM 17361]
 gi|270332500|gb|EFA43286.1| 30S ribosomal protein S1 [Prevotella bergensis DSM 17361]
          Length = 590

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  R I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQK--REIISH 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV+    + V +LD
Sbjct: 210 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVELDQKIKVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD +R +I L +K +  +  
Sbjct: 269 FDEERKRIALGLKQLTPHPW 288



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V+  +  +V    +FG FV      DGL+HIS LS  ++V   SD    
Sbjct: 373 DPWENIETKYPVDSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSDFTTV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  + V +L+ D +  ++ L  K +++N  +
Sbjct: 433 GADIDVVVLEIDKENRRLSLGHKQLEENPWE 463



 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDLFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  +VL  +   +  +      + +    +  ++ +    
Sbjct: 191 HKALIEAELEAQKREIISHLEKGQVLEGTVKNITSY-----GVFVDLGGVDGLVHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I          A            S+    +V    KG+
Sbjct: 246 -WGRVSDPHEVVELDQKIKVVILDFDEERKRIALGLKQLTPHPWDSLDTELKVGDHIKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +  GD V   +L  D + + I 
Sbjct: 305 VVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLHVGDEVEAVILTLDRQERKIS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 365 LGIKQLKDDPWENI 378



 Score = 43.7 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           +S  A  EA         +  + +++ +G V+ V      V+     DG++  S+     
Sbjct: 22  TSQSASREALENAYDETLNKIQEHEVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRY-- 79

Query: 657 VAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
                  +K GD V V + D  D +G++ LS K
Sbjct: 80  --NPE--LKVGDKVEVYVEDQEDKKGQLVLSHK 108



 Score = 38.0 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +   +     +++G++ ++MD GA +      +G      L+ E         K G+
Sbjct: 461 PWETYESIYVPGSVHEGKITEMMDRGAVITLNEGGEGFATPRHLTKED----KSQAKLGE 516

Query: 669 TVWVKLLDFD-DRGKIKLS 686
            +  K+++F+ D  +I LS
Sbjct: 517 ELPFKVIEFNKDSRRIILS 535


>gi|300860310|ref|ZP_07106397.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11]
 gi|300849349|gb|EFK77099.1| 30S ribosomal protein S1 [Enterococcus faecalis TUSoD Ef11]
 gi|315144429|gb|EFT88445.1| putative ribosomal protein S1 [Enterococcus faecalis TX2141]
 gi|315160457|gb|EFU04474.1| putative ribosomal protein S1 [Enterococcus faecalis TX0645]
          Length = 403

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      I S               +        + +G+V ++ DFGAF+   G  D
Sbjct: 170 IEIEPSENRLILSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDL-GGVD 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVH+S+++ + V K SD +  G+ V VK+L  + + G+I LS+K         I
Sbjct: 229 GLVHVSEIAHQHVGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDI 283



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD V VK+L+ + +
Sbjct: 291 TVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPE 350

Query: 680 RGKIKLSMKVVDQ 692
             +I LS+K ++ 
Sbjct: 351 EHRIALSIKALEP 363



 Score = 40.7 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQ 651
           +              E   +      V  I KG+V+ + D    V   G   +G+V   +
Sbjct: 1   MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE 60

Query: 652 LSTERVAKTSDVVKEGDTVW-VKLLDF---DDRGKIKLSMKVVD 691
           LST  V    ++VK GD +  V +       + G   LS + +D
Sbjct: 61  LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLD 104


>gi|162149228|ref|YP_001603689.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545034|ref|YP_002277263.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787805|emb|CAP57403.1| 30S ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532711|gb|ACI52648.1| ribosomal protein S1 [Gluconacetobacter diazotrophicus PAl 5]
          Length = 571

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E   I  G V  + D+GAFV   G  DGL+H++
Sbjct: 177 GNIVVSRRAVLEETRAEQRSELIQGLKEG-MILDGVVKNITDYGAFVDL-GGVDGLLHVT 234

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++ +R+   S+ ++ G  V V+++ F+ D  +I L MK ++ +  + + 
Sbjct: 235 DIAWKRINHPSEALQIGQPVRVQVIRFNPDTQRISLGMKQLEADPWENVA 284



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++         Y G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 278 DPWENVAIKYPPGARYSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 337

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K V +N  +
Sbjct: 338 SQEVDVMVLDVDSGKRRISLGLKQVQRNPWE 368



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVV 664
            R       +  ++    +G++  + +FG F+      DG+VH+S LS +   + +    
Sbjct: 363 QRNPWEQFAEEHKIGSTVEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDEPGEVAMTHY 422

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           ++G  V  K+LD D ++ +I L +K + ++    
Sbjct: 423 EKGQVVQAKVLDVDVEKERISLGIKQLHEDPAAD 456


>gi|291519327|emb|CBK74548.1| Ribosomal protein S1 [Butyrivibrio fibrisolvens 16/4]
          Length = 374

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSM 687
           ++ DFGAFV      D L+H+SQ+S ER+ K SDV+  G  +  K+++F DD  KI LSM
Sbjct: 286 RMKDFGAFVELAPGIDALLHVSQISKERIEKPSDVLSIGQDIEAKVVEFNDDEKKISLSM 345

Query: 688 KVVDQNTGKP 697
           K + +     
Sbjct: 346 KALLEPETAD 355



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +     +   +   L+    +   F P   +  +    +       G+ I
Sbjct: 98  ERLAEAFENGEVLTATVDKVLKGGLTVVVDEARVFIPASFVSDVYEKDLGKY---QGQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   K        +     +L   + A+     ++ +    + ++G V  V DFG
Sbjct: 155 SFVITEFDPKR-----RRIIGNRKTLLVADRAKAQEELMSKIAVGQE-FEGTVKNVKDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   GA DGL+HIS++S  RV   +  +  GDT+ V + +  D GKI LS K  ++N 
Sbjct: 209 AFIDLGGA-DGLLHISEMSWGRVENPTKTLNVGDTIKVFVKEIKD-GKIALSCKFDNENP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  S+ + E     + VVK G
Sbjct: 8   QMLEESFKTIHNGEVVDGTVISVKPDEIVLNIGYKSDGIITRSEYTNESNVDLTTVVKVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +   ++   D  G++ LS K + Q  G
Sbjct: 68  DPLSAIVVKVNDGEGQVLLSYKRLVQEKG 96


>gi|254720231|ref|ZP_05182042.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
 gi|265985243|ref|ZP_06097978.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
 gi|306838627|ref|ZP_07471463.1| RNA-binding S1 domain-containing protein [Brucella sp. NF 2653]
 gi|264663835|gb|EEZ34096.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
 gi|306406270|gb|EFM62513.1| RNA-binding S1 domain-containing protein [Brucella sp. NF 2653]
          Length = 767

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|218672367|ref|ZP_03522036.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli GR56]
          Length = 69

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           GARDGLVHISQL++ERVAKT DVVKEGD VWVKLL FD+RGK++LSMKVVDQ TG+ I 
Sbjct: 1   GARDGLVHISQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIA 59


>gi|251798940|ref|YP_003013671.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
 gi|247546566|gb|ACT03585.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 747

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P  + + +G+G   ++ I++      ++   G                  I  +T   
Sbjct: 623 IDPAAMASSLGVGVPTLKDIID------SLLRPGRDPREELPPPIFHTDVLNIEDLTPGM 676

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+     G V  V+DFGAF+      DGLVHISQ+S + V    DVV  GD V V +L  
Sbjct: 677 ELQ----GTVRNVIDFGAFIDIGIKNDGLVHISQMSDKFVKHPMDVVSVGDNVTVWVLGV 732

Query: 678 D-DRGKIKLSMK 688
           D  +G++ L+M+
Sbjct: 733 DLKKGRVSLTMR 744


>gi|163942616|ref|YP_001647500.1| general stress protein 13 [Bacillus weihenstephanensis KBAB4]
 gi|229014089|ref|ZP_04171211.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
 gi|229062574|ref|ZP_04199884.1| RNA binding S1 domain protein [Bacillus cereus AH603]
 gi|229135728|ref|ZP_04264502.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|229169624|ref|ZP_04297326.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|163864813|gb|ABY45872.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228613820|gb|EEK70943.1| RNA binding S1 domain protein [Bacillus cereus AH621]
 gi|228647733|gb|EEL03794.1| RNA binding S1 domain protein [Bacillus cereus BDRD-ST196]
 gi|228716677|gb|EEL68373.1| RNA binding S1 domain protein [Bacillus cereus AH603]
 gi|228747197|gb|EEL97078.1| RNA binding S1 domain protein [Bacillus mycoides DSM 2048]
          Length = 114

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 10  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSIDEEH 69

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 70  RKMSLSLKAAKRKQGRILI 88


>gi|322795735|gb|EFZ18414.1| hypothetical protein SINV_08066 [Solenopsis invicta]
          Length = 258

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               E+N+I+ G+V  V ++GAFV   G  + GL+H +Q+ST  V   ++V+++G+ VW 
Sbjct: 1   MTKCELNQIFLGEVASVQNYGAFVRIPGTPQQGLIHRTQVSTAHVDNVAEVLQKGERVWC 60

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
           K++   + GK+ LSMK V+Q  G  +
Sbjct: 61  KVISVGEDGKVGLSMKYVNQGNGTDL 86


>gi|197119399|ref|YP_002139826.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter bemidjiensis Bem]
 gi|197088759|gb|ACH40030.1| S1 RNA-binding domain-containing transcriptional accessory protein
           [Geobacter bemidjiensis Bem]
          Length = 754

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           RE + +I D+ E   I +G V  V  FGAFV     +DGLVH+SQLS       +D VK 
Sbjct: 635 REDVVTIADLKEG-MILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKV 693

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G+ V VKLL  D +R +I LS+K  +  
Sbjct: 694 GEIVKVKLLSADPERKRISLSIKQAEPE 721


>gi|325917461|ref|ZP_08179670.1| transcriptional accessory protein [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536335|gb|EGD08122.1| transcriptional accessory protein [Xanthomonas vesicatoria ATCC
           35937]
          Length = 787

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   + +G V  V  FGAFV     +DG
Sbjct: 621 DILKELEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 681 LVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTCRLSDTPPAAD 733


>gi|312869842|ref|ZP_07729983.1| S1 RNA binding domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094621|gb|EFQ52924.1| S1 RNA binding domain protein [Lactobacillus oris PB013-T2-3]
          Length = 165

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 43/80 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAFV     + GLVHISQ+S + +    DV+  GDTV  K+   
Sbjct: 4   EVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDTVTAKVTRV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            D GKI LSMK    +  K 
Sbjct: 64  GDDGKIALSMKAAAPHEQKE 83


>gi|306841536|ref|ZP_07474234.1| RNA-binding S1 domain-containing protein [Brucella sp. BO2]
 gi|306288373|gb|EFM59732.1| RNA-binding S1 domain-containing protein [Brucella sp. BO2]
          Length = 767

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|302385380|ref|YP_003821202.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
 gi|302196008|gb|ADL03579.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
          Length = 366

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 21/186 (11%)

Query: 527 GRLHILNEMSKVLSESRLQL-GEFTPRVEIMAIPPDQIRNVIGMGGKV-------IRGIV 578
            R  I+ +  +++   R +L  E   R+    +    I+NV   G  +       +  I 
Sbjct: 164 KRRRIIGDRKQIMVAKRAELQKELFDRIHTGDVVEGTIKNVTDFGAFIDLGGADGLLHIS 223

Query: 579 EQTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQ 626
           E +  +V          +   V +   +  +I  + +   +       +K     +  G+
Sbjct: 224 EMSWGRVESPKKAFKAGEKIKVLVKDINGDKIALSLKFPETNPWKDASSKYAVGNVVSGK 283

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V ++ DFGAFV      D L+H+SQ+S E V K +DV+  G  +  +++DF++   KI L
Sbjct: 284 VARMTDFGAFVELEPGVDALLHVSQISKEHVDKPADVLAIGQEIEARVVDFNEGDKKISL 343

Query: 686 SMKVVD 691
           S+K + 
Sbjct: 344 SIKALQ 349



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           +++     K I  I+ +   K          I       +    E+ + + D      + 
Sbjct: 144 KDLSKYADKEIEFIITEFNPKR------RRIIGDRKQIMVAKRAELQKELFDRIHTGDVV 197

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           +G +  V DFGAF+   GA DGL+HIS++S  RV       K G+ + V + D +   KI
Sbjct: 198 EGTIKNVTDFGAFIDLGGA-DGLLHISEMSWGRVESPKKAFKAGEKIKVLVKDINGD-KI 255

Query: 684 KLSMKVVDQNTGKP 697
            LS+K  + N  K 
Sbjct: 256 ALSLKFPETNPWKD 269



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          +I  G+V+ V +    ++     DG++  S+ +  +    +  V+ G
Sbjct: 8   QMLEESLKTIRTGEIVTGKVIDVKEDEIVLNIGYKSDGIIPRSEYTDNQNLDLTTAVQVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           + +  K++   D  G++ LS K +  + G
Sbjct: 68  EEMEAKVIKVNDGEGQVALSYKRLAADRG 96


>gi|289669048|ref|ZP_06490123.1| transcription-related protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 787

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   + +G V  V  FGAFV     +DG
Sbjct: 621 DILKELEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 681 LVHISALSESFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTCRLSDTPPPAD 733


>gi|283853642|ref|ZP_06370876.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
 gi|283570975|gb|EFC19001.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
          Length = 576

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I      +    G+V  ++D+GAFV      +GLVHIS++S  R +   S +V  
Sbjct: 281 DPWENIAGKYPEDTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVHV 340

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +L  D D+ +I L MK V  N  
Sbjct: 341 GDEVEVVVLSVDPDKKRISLGMKQVRPNPW 370



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 11/186 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    ++       I+  +    +     +  F P   +   P   +  ++G      
Sbjct: 112 DKLEEIQEKDDVITGRIVRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALVGQEF--- 168

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E      M + +    E  +   G+V  + ++G
Sbjct: 169 ----EFRVLKINRRRSNVIVSRRVLLEE--RRDSMRKDLLKTLEEGQTVTGRVKNITEYG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S +R+    ++V  GD + +K+L FD D+ K+ L MK +  +
Sbjct: 223 VFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLVAD 281

Query: 694 TGKPIV 699
             + I 
Sbjct: 282 PWENIA 287



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + D   V  + KG V  + DFG FV      +GLVH+S++S ++V   +++ KEG
Sbjct: 455 DPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAELYKEG 514

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVV 690
           D +  K++    D+R ++ LS+K +
Sbjct: 515 DEIEAKVIHVSADER-RLGLSIKSI 538



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      + +G V  + +FG F+      DGL+H+S +S  ++V    ++ K G
Sbjct: 369 PWDIVAEKYPEGTVLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSG 428

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           DTV  K+L  D +  K  L +K + ++  
Sbjct: 429 DTVMAKVLTVDKENEKFTLGIKQLSEDPW 457


>gi|116495974|ref|YP_807708.1| RNA-binding protein [Lactobacillus casei ATCC 334]
 gi|191639453|ref|YP_001988619.1| S1 family RNA-binding protein [Lactobacillus casei BL23]
 gi|227533048|ref|ZP_03963097.1| RNA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239630373|ref|ZP_04673404.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067524|ref|YP_003789547.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|116106124|gb|ABJ71266.1| RNA binding protein (S1 domain) [Lactobacillus casei ATCC 334]
 gi|190713755|emb|CAQ67761.1| S1 family RNA-binding protein [Lactobacillus casei BL23]
 gi|227189449|gb|EEI69516.1| RNA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526656|gb|EEQ65657.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439931|gb|ADK19697.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|327383545|gb|AEA55021.1| Polyribonucleotide nucleotidyltransferase [Lactobacillus casei
           LC2W]
 gi|327386738|gb|AEA58212.1| Polyribonucleotide nucleotidyltransferase [Lactobacillus casei
           BD-II]
          Length = 161

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            EV     G+V  +  FGAFV     + GLVHIS++S   V    DV+  G+ V VK+L 
Sbjct: 3   VEVGTKVTGKVTGITKFGAFVELGDGKTGLVHISEVSDAYVKDIHDVLHVGEPVTVKVLS 62

Query: 677 FDDRGKIKLS-MKVVDQN 693
             D GKI LS  K VD+ 
Sbjct: 63  IQD-GKIGLSIRKAVDKP 79


>gi|110638350|ref|YP_678559.1| 30S ribosomal protein S1 [Cytophaga hutchinsonii ATCC 33406]
 gi|110281031|gb|ABG59217.1| SSU ribosomal protein S1P [Cytophaga hutchinsonii ATCC 33406]
          Length = 606

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 25/232 (10%)

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA--LQQA 524
           V  G     + D+  ++         ++   + I     +   G +  +I++ A   ++ 
Sbjct: 87  VDGGVKVGEVYDVFVEDQENASGQLVLSRRKARIVKA-WENIQGALDNDIIIEALVKRRT 145

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
           K G +  L  +   L  S++ +      +    I   +   V                 K
Sbjct: 146 KGGLIVDLFGVEAFLPGSQIDVKP----IRDFDIFVGKKMEV--------------KVVK 187

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +N  +D  V      + +    ++ +  I +  E  ++ +G +  + +FG F+   G  D
Sbjct: 188 INYTNDNVVVSHKVLIEKDIEKQKAV--ILNNLEKGQVLEGVIKNMTNFGVFIDL-GGVD 244

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+HI+ +S  R++   +V+     V V +LDFD ++ +I L MK +  +  
Sbjct: 245 GLLHITDISWGRISHPQEVLSLDQKVQVVVLDFDEEKKRISLGMKQLTSHPW 296



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + +FG F+      DGLVH+S LS  +++   S+ VK GD + V +L+ D + 
Sbjct: 398 HTGLVRNLTNFGLFIELEEGIDGLVHVSDLSWTKKIKHPSEFVKVGDKLDVVVLELDVEN 457

Query: 681 GKIKLSMKVVDQNTG 695
            ++ L  K +++N  
Sbjct: 458 RRLALGHKQLEENPW 472



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++     V    KG++V V D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 294 HPWDALAADVVVGSKIKGKIVNVADYGAFLELHPGVEGLIHVSEMSWSQHLRNPQDFIKV 353

Query: 667 GDTVW--VKLLDFDDRGKIKLSMKVVDQNTG 695
           GD +   V  LD D+R K+ L +K + ++  
Sbjct: 354 GDELETVVLTLDRDER-KMSLGIKQLTEDPW 383


>gi|270293991|ref|ZP_06200193.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275458|gb|EFA21318.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 711

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 14/164 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M+K L  S  +L     R   + I P++  +   +G   ++ I+++   K   D  
Sbjct: 561 IVEQMAKDLGCSVAEL--IANRELRLKINPERYLSPT-VGMPTLKDILQELD-KPGRDPR 616

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +K        I    + +R+I+D+ E  ++  G V  + +FGAFV      +GLVH+S
Sbjct: 617 GPIK--------IFEFDKNVRTISDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLS 667

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           QL+   ++  ++VV     + VK+L  D DR +I+L+MK V+QN
Sbjct: 668 QLADRFISDPNEVVSIHQHIRVKVLSIDMDRKRIQLTMKGVEQN 711


>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
          Length = 252

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 7/226 (3%)

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V++  +    +R+DGR     R ++ + G +    G    + G +     V  G RE   
Sbjct: 3   VIKEYINPAGLRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATV-YGPREVSN 61

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D                   A          SR               V+  +     
Sbjct: 62  RLDGKYNEVT--ITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNS 119

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  E+ + DGS   A +  + LAL+DA + +   V    +GL++  D    + D++ 
Sbjct: 120 QIHICIEVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFD----VVDLTT 175

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           +E H       +       T +        ++  ++   ++ A++ 
Sbjct: 176 EEIHSQCPSICITVQGHDPTNIVWMESNSRLAPEVITRLVKVAQKA 221



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 82/212 (38%), Gaps = 17/212 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD----FFPLTVNYQERTYA 69
           R L LE G+I+   DG      G + V ATV   R + +  D       +T +     +A
Sbjct: 24  RRLALEFGKISG-CDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFA 82

Query: 70  VGKIPGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKN-ETQVIINVMQHDLESSPH 127
             +      R + R +  +E + + ++D +   +    Y N +  + I V++ D      
Sbjct: 83  GER-----RREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGSDKA- 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA  AL+ + +     V    V  I G  V++   +E      S+ + V G    
Sbjct: 137 -ACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSICITVQGHDPT 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
            ++     ++L+ +V+   +         V E
Sbjct: 196 NIVWMESNSRLAPEVITRLVKVAQKASTDVFE 227


>gi|239908954|ref|YP_002955696.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
 gi|239798821|dbj|BAH77810.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
          Length = 576

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I      +    G+V  ++D+GAFV      +GLVHIS++S  R +   S +V  
Sbjct: 281 DPWENIAGKYPEDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHV 340

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +L  D D+ +I L MK V  N  
Sbjct: 341 GDEVEVVVLSVDPDKKRISLGMKQVRPNPW 370



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 11/186 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    ++       I+  +    +     +  F P   +   P   +  ++G      
Sbjct: 112 DKLEEIQEKDDVISGKIVRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALVGQEF--- 168

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E      M + +    E  +   G+V  + ++G
Sbjct: 169 ----EFRVLKINRRRSNVIVSRRVLLEE--RRDSMRKDLLKTLEEGQTVTGRVKNITEYG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S +R+    ++V  GD + +K+L FD D+ K+ L MK +  +
Sbjct: 223 VFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIAD 281

Query: 694 TGKPIV 699
             + I 
Sbjct: 282 PWENIA 287



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + D   V  + KG V  + DFG FV      +GLVH+S++S ++V   +++ KEG
Sbjct: 455 DPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAEIYKEG 514

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVV 690
           D +  K++    D+R ++ LS+K +
Sbjct: 515 DEIEAKVIHVSADER-RLGLSIKSI 538



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 100/258 (38%), Gaps = 34/258 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
              G VK+  ++ +  D+ G +   H+  M +K       +  +  ++++  +S +    
Sbjct: 210 TVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ--- 266

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                   +  +   M +++++    +    P    M+     + +      +  G + +
Sbjct: 267 -------DKQKVSLGMKQLIADPWENIAGKYPEDTRMSGKVTNLVDYGAFVELEPGVEGL 319

Query: 575 RGIVEQTGAK--------VNIDDDGTVKIASSSLAE------IEAAREMIRSITDVP-EV 619
             I E +  +        V++ D+  V + S    +      ++  R     I       
Sbjct: 320 VHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPE 379

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
             I +G V  + +FG F+      DGL+H+S +S  ++V    ++ K GD V  K+L  D
Sbjct: 380 GTILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVD 439

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +  K  L +K + ++  
Sbjct: 440 KENEKFTLGIKQLSEDPW 457


>gi|229159409|ref|ZP_04287429.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus R309803]
 gi|228624076|gb|EEK80882.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus R309803]
          Length = 722

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 130/352 (36%), Gaps = 44/352 (12%)

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHP 411
             +E  VD L   +R  F +  N       +  +++R   P  +      ++  RR   P
Sbjct: 390 ESEEFIVDVLQNVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDP 449

Query: 412 VLPQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPIS 456
           +       P ++ +      VS+         + E+  +     V  +S+AL+     +S
Sbjct: 450 LAELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLS 509

Query: 457 KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
           K VA   +   ++   F   +++            +  G    I      +   GI    
Sbjct: 510 KTVAKNIVAKREEDGKFTKRTELKKIPRLGAKTYEQCIGFLR-ILEGANPLDRTGIHPEQ 568

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
                   K   L   +     L +S  +            +   ++    G+G   +  
Sbjct: 569 YKNVELLLKSLDLSKDDVGQLHLQKSLEE------------VEISKLSQETGIGEPTLVD 616

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I++     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAF
Sbjct: 617 IIDAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAF 666

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LST+ V    D+V  G  V V + D D  +G++ LSM
Sbjct: 667 VDVGVKQDGLVHISKLSTQYVKHPLDIVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|254465355|ref|ZP_05078766.1| S1 RNA binding domain protein [Rhodobacterales bacterium Y4I]
 gi|206686263|gb|EDZ46745.1| S1 RNA binding domain protein [Rhodobacterales bacterium Y4I]
          Length = 788

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          + + A+ +         +   + +G V  V  FGAFV     +DG
Sbjct: 615 DIFQELEKPGRDPRPSFVTASFKDGVEEITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVH+SQL+   V    +VVK G  V V + + D  R +I L+MK
Sbjct: 675 LVHVSQLADRFVKDPHEVVKTGQVVKVTVTEVDVPRKRIGLTMK 718


>gi|39933661|ref|NP_945937.1| RNA binding S1 [Rhodopseudomonas palustris CGA009]
 gi|39647507|emb|CAE26028.1| transcriptional accessory protein [Rhodopseudomonas palustris
           CGA009]
          Length = 778

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   I +  +  V  FGAF      +DG
Sbjct: 618 DILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATITNVAAFGAFADIGVHQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           L+HIS +S  R+    +VVK G  V VK+L+ D  R +I L++++ D    
Sbjct: 678 LIHISAMSERRINDPREVVKPGQVVKVKVLEVDVPRNRIGLTLRMSDPIPA 728


>gi|320165541|gb|EFW42440.1| RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1303

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD----------VPEVNKIYKGQVV 628
           E T   V I+ D      +++     A R    +              PEV +IY   V 
Sbjct: 269 EMTATDVTIETDAMTATDATTDETTAAPRRPTETAARHPTMHTFTRRAPEVGRIYDASVT 328

Query: 629 KVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
            + +FG F    G R   +GLVHIS++  E +V   +DVV  G  + VKL     + K+ 
Sbjct: 329 SIKEFGFFAQLDGFRRKVEGLVHISEIRREGKVTNPADVVSRGQQIKVKLKSIAGQ-KMS 387

Query: 685 LSMKVVDQNTGKPI 698
           LSMK VDQ TG+ +
Sbjct: 388 LSMKDVDQTTGEDL 401


>gi|192289017|ref|YP_001989622.1| RNA binding S1 domain protein [Rhodopseudomonas palustris TIE-1]
 gi|192282766|gb|ACE99146.1| RNA binding S1 domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 777

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   I +  +  V  FGAF      +DG
Sbjct: 618 DILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATITNVAAFGAFADIGVHQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           L+HIS +S  R+    +VVK G  V VK+L+ D  R +I L++++ D    
Sbjct: 678 LIHISAMSERRINDPREVVKPGQVVKVKVLEVDVPRNRIGLTLRMSDPIPA 728


>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
 gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 257

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 27/234 (11%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL----GTREDEQYVDSLSG 368
           R+DGR    +R I AQ+       GSS    G T+ + VV      G R          G
Sbjct: 14  RVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGG 73

Query: 369 TQRNDFMMHYNF--LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            Q  +  +  N      ++ +  R G                    L        T+ I 
Sbjct: 74  GQSKNAEVAVNIVIAGFSSVDRKRRGRGD----------------NLHTHLFPHSTINIS 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDIS-G 481
             +   DGS   A +  ++LA +DAG+P++  VA    G       + +    L D++  
Sbjct: 118 LHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDMNHQ 177

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +E  L  +     G    +  +  + ++       M+       +    IL+ +
Sbjct: 178 EEQELPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRV 231


>gi|83854723|ref|ZP_00948253.1| 30S ribosomal protein S1 [Sulfitobacter sp. NAS-14.1]
 gi|83941246|ref|ZP_00953708.1| 30S ribosomal protein S1 [Sulfitobacter sp. EE-36]
 gi|83842566|gb|EAP81733.1| 30S ribosomal protein S1 [Sulfitobacter sp. NAS-14.1]
 gi|83847066|gb|EAP84941.1| 30S ribosomal protein S1 [Sulfitobacter sp. EE-36]
          Length = 553

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQEV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILSIGETIKVQVIKINKETHRISLGMKQLQEDPW 266



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVQAKYPLESTHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 354



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG FV   G  DG+VH+S LS  +R  +     +
Sbjct: 350 RNPWEVFAETHPEGTEVEGEVKNITEFGLFVGLPGDIDGMVHLSDLSWDQRGEEAIQDYR 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GDTV   + + D ++ +I LS+K V
Sbjct: 410 KGDTVQAVVSEVDVEKERISLSIKGV 435



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSVVTVTVTSIEDGGIEVEYEGMK-AFIRRSDLSRDRAEQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ +S+K  +    K  V
Sbjct: 497 DKVDVRITNVDAKAHRLGVSIKAREIAEEKEAV 529


>gi|289665857|ref|ZP_06487438.1| transcription-related protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 787

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   + +G V  V  FGAFV     +DG
Sbjct: 621 DILKELEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 681 LVHISALSESFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTCRLSDTPPPAD 733


>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
 gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
          Length = 383

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V +D +    I S      E      + +    +   + +G V ++ DFGAFV   G  D
Sbjct: 154 VELDKEANKLILSQRAVLDEEVEAKKKEVLASLQPGDVVEGTVQRLTDFGAFVDV-GGVD 212

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GLVHISQL+  RV   ++VVKEGD V VK+L  D D  ++ LS+K       + +
Sbjct: 213 GLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQV 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +    +   + +G V +++ FGAFV      +GLVHISQ++   +    +V+ EG+
Sbjct: 263 PWEQVEGTIQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGE 322

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            V  K+LD +    +I LS++ +  + G
Sbjct: 323 RVQAKVLDVNISEKRISLSIRELLDDAG 350



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +        +      V  +  G+V KV D  AFV      DG++ IS+LS+  V K SD
Sbjct: 1   MVEEMNNEVTEMKSFSVGDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSLHVEKVSD 60

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           V+ EGD + +K+L  +D   I LS + V   
Sbjct: 61  VLSEGDELELKVLKVEDDELI-LSKRAVQAE 90


>gi|311895331|dbj|BAJ27739.1| putative transcription accessory protein [Kitasatospora setae
           KM-6054]
          Length = 779

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------- 611
           +I  +IG  G V+R +          DD   V   +  L E++      R          
Sbjct: 585 KIGELIG-NGPVLRSL----RPGDFADDTFGVPTVTDILGELDKPGRDPRPAFQTATFKD 639

Query: 612 --SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   EV  + +G V  V  FGAFV     +DGLVH+S LS   V    +VVK GD 
Sbjct: 640 GVEKISDLEVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSRNFVKDPREVVKPGDI 699

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           V  K+   D  R +I L++++ D  T  P
Sbjct: 700 VRAKVTAVDVQRKRIGLTLRLDDDTTPGP 728


>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
           gruberi]
 gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
           gruberi]
          Length = 300

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 18/240 (7%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI-RGDTQAIVVVTLGTREDEQYVDSL 366
           ++   R D R  +  R++  QVG++++  GS+    +  T+ I  V  G R+     +  
Sbjct: 60  IETGKRQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSV-YGPRQISARNEF- 117

Query: 367 SGTQRNDFMMHYNFLPCATGEVSR--------MGAPSRREIGHGRLARRAIHPVLPQTAQ 418
             +        Y     A    +              R  + +    R A+   +     
Sbjct: 118 --SDIGAIQCEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKY 175

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               + +   I + DGS+  A +  +SLAL +AG+ +   V+      +    +  I+ D
Sbjct: 176 PKSVIDVYCFILQDDGSALSAAISCASLALANAGIEMYDMVSACTTSEL----EGHIIVD 231

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            +  E          A   + +  +    ++G +S   +  A+     G   +   M + 
Sbjct: 232 PTNLEYKYASGGMVCAYMSN-LNQVTQLSQVGDMSYQKIGEAMDLCIDGCSKLNQLMQQC 290



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGE-TVVLATVVYDRSLKDGQDFF---PLTVNYQERTYA 69
           R + ++ G I +Q+ G+    Y   T V+ +V   R +    +F     +   Y+   +A
Sbjct: 75  RNVFMQVGVI-KQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQCEYRVANFA 133

Query: 70  ---VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLES 124
                          +    + +  S  +  ++       K  K+   V   ++Q D  +
Sbjct: 134 YQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYCFILQDDGSA 193

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE-DQGSLDLFVS-GTQ 182
                ++  AS AL  +G+     V       + G  +++P   E    S  +  +  + 
Sbjct: 194 LS--AAISCASLALANAGIEMYDMVSACTTSELEGHIIVDPTNLEYKYASGGMVCAYMSN 251

Query: 183 DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
              +    +   +S   + +A+    + C  + + + +
Sbjct: 252 LNQVTQLSQVGDMSYQKIGEAMDLCIDGCSKLNQLMQQ 289


>gi|312113691|ref|YP_004011287.1| ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100]
 gi|311218820|gb|ADP70188.1| ribosomal protein S1 [Rhodomicrobium vannielii ATCC 17100]
          Length = 576

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  S+ E   A +    +  + E  ++  G V  + D+GAF+   G  DGL+H++
Sbjct: 180 GNIVVSRRSVLEETRAEQRSEIVAKLEEG-QVVDGVVKNITDYGAFIDL-GGIDGLLHVT 237

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++ +RV   ++++  GDTV V+++  + +  +I L MK +  +  
Sbjct: 238 DMAWKRVNHPTEILNVGDTVKVQIVRINPETQRISLGMKQLGSDPW 283



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + D+GAFV      +GL+H+S++S  ++      +V     V V++L+ D  +
Sbjct: 296 FTGTVTNIADYGAFVELEPGVEGLIHVSEMSWVKKNVHPGKIVSTSQEVEVQVLEVDASK 355

Query: 681 GKIKLSMKVVDQNTG 695
            +I L +K   +N  
Sbjct: 356 RRISLGLKQTQENPW 370



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 91/256 (35%), Gaps = 38/256 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     + I  +           + + + + 
Sbjct: 213 GVVKNITDYGAFIDLGGIDGLLHVTDMAWKRVNHPTEILNVG----------DTVKVQIV 262

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +       I   M ++ S+    +    P           I +      +  G + +  +
Sbjct: 263 RINPETQRISLGMKQLGSDPWSGIEAKYPIGGKFTGTVTNIADYGAFVELEPGVEGLIHV 322

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +     ++                       +  D       
Sbjct: 323 SEMSWVKKNVHPGKIVSTSQEVEVQVLEVDASKRRISLGLKQTQENPWNTFADTHPKGSE 382

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFD- 678
            +GQV  + +FG FV   G  DG+VH+S L   R     + +KE   GDTV   +L+ D 
Sbjct: 383 VEGQVRNITEFGLFVGLEGGIDGMVHLSDLDWSR--SGEEAIKEYNKGDTVRAVVLETDP 440

Query: 679 DRGKIKLSMKVVDQNT 694
           ++ +I L +K +  + 
Sbjct: 441 EKERISLGIKQLATDP 456



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVV 664
           A +  +S +   +   I   +V++V D G  V   G      +  + LS +R  +  +  
Sbjct: 453 ATDPFQSASSTLKKGSIVTCEVIEVKDAGIDVKIAGTDMTAFIRRADLSRDRSEQRPERF 512

Query: 665 KEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
             GD V   +   D  G+ I LS+K ++    K  V
Sbjct: 513 SAGDMVDAVVTQVDKGGRKIGLSIKALEIAEEKEAV 548


>gi|28210997|ref|NP_781941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium tetani E88]
 gi|50401023|sp|Q895G2|ISPH_CLOTE RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase
 gi|28203436|gb|AAO35878.1| conserved protein [Clostridium tetani E88]
          Length = 635

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++  + +     V  I  G VV+   FGAFV      DGL+HISQ+S +RV +  D +  
Sbjct: 548 KDPWKDVEVKYPVGNIVLGTVVRFASFGAFVELEPGVDGLIHISQISHKRVDRVEDELSI 607

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G+ V  K+++ D ++ KI LS+K V+
Sbjct: 608 GEQVKAKIVEVDGEKRKIGLSIKEVN 633



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 11/214 (5%)

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG---- 547
           K       I  +  + K   IS  ++ +  + A            KV+ + +  +     
Sbjct: 345 KGDIIKGKIIKLGSENKPPVIS--VIELNRENAYVELKEAFENKEKVVVKVKEDVNGGLI 402

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD--DGTVKIASSSLAEIEA 605
                +  + IP   +  +  +    I    E T   +  ++  + T  +AS      E 
Sbjct: 403 SIYKNIVRVFIPASHV-ELRHVDDLSIYKGCELTVNIIEFEEGRNNTRIVASRRDLLKEE 461

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             ++        E + I +G+V ++ DFGAFV+     DGL+H+S++S  RV K SD++K
Sbjct: 462 QSKVEEETWSSLEKDTIKEGEVRRLTDFGAFVNI-NGVDGLLHVSEISWGRVEKPSDMLK 520

Query: 666 EGDTVWVK-LLDFDDRGKIKLSMKVVDQNTGKPI 698
            GD + V       D+ K+ LS+K + ++  K +
Sbjct: 521 VGDKIKVYIKDIDKDKKKLALSIKDLTKDPWKDV 554



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSD 662
               E + +      + +  +G++V ++    A+V+     D ++ +S+++ +     ++
Sbjct: 282 NEQLEYMENNDIQISIGQEVEGEIVSIVSSNEAYVNIGYKSDAILLLSEVTKDNDEDINN 341

Query: 663 VVKEGDTVWVKLLDFDDRGK 682
            VK+GD +  K++      K
Sbjct: 342 FVKKGDIIKGKIIKLGSENK 361


>gi|326387158|ref|ZP_08208768.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208339|gb|EGD59146.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 566

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAVLEETRAEQRSGLIQNLKEG-QIIDGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            +S +RV   S+V+  GDTV V+++  + D  +I L MK ++ +  +
Sbjct: 229 DMSYKRVNHPSEVIAIGDTVRVQIIRINQDTQRISLGMKQLESDPWE 275



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A +    +  +   V  + +G+V    +FG F+   G  DG+VH+S ++        D 
Sbjct: 355 QAQQNPWEAFAERHPVGSVVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWG--ISGEDA 412

Query: 664 V---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           +   ++G+ V   +LD D D+ +I L MK +++
Sbjct: 413 LALHRKGEHVQAVVLDVDVDKERISLGMKQLEK 445



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V     G V  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 272 DPWEGVAAKYPVGAKLTGTVTNITEYGAFVELEAGIEGLVHVSEMSWTKKNVHPGKIVST 331

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D D+ +I L +K   QN  +
Sbjct: 332 SQEVEVVVLEVDSDKRRISLGLKQAQQNPWE 362


>gi|293115412|ref|ZP_05791358.2| S1 RNA binding domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292810175|gb|EFF69380.1| S1 RNA binding domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 720

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +             +          +  +   I  G V  V+DFGAFV     +DG
Sbjct: 615 DIVKELEKPGRDPREEMPKPVLRSDVMSMEDLKPGMILSGTVRNVIDFGAFVDIGVHQDG 674

Query: 646 LVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LVHISQL S + +    +VV  GD V VK+L+ D  + +I+LSM
Sbjct: 675 LVHISQLTSKKYIKHPMEVVSVGDIVQVKVLNVDIPKKRIQLSM 718


>gi|254477028|ref|ZP_05090414.1| ribosomal protein S1 [Ruegeria sp. R11]
 gi|214031271|gb|EEB72106.1| ribosomal protein S1 [Ruegeria sp. R11]
          Length = 559

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLSEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPW 272



 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDGAKRRVSLGLKQTMRNPWE 360



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 202 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVI---------- 251

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++  +    +G   P   +       I +      +  G + +  +
Sbjct: 252 KINKETHRISLGMKQLQEDPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHV 311

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +                  R       +       
Sbjct: 312 SEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETHPEGTQ 371

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + + D ++
Sbjct: 372 VEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVSAVVSEVDVEK 431

Query: 681 GKIKLSMKVV 690
            +I LS+K +
Sbjct: 432 ERISLSIKAL 441



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +   +V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 444 DKFAEAVGGVKRGSVITVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 502

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 503 DKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 535


>gi|239616621|ref|YP_002939943.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505452|gb|ACR78939.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 572

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +++  +  E     +G +  + DFGAFV       GL+  S++S +   K  DV+  G
Sbjct: 183 EKVKAYFEALETGSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPSQKVHDVLNVG 242

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D V VK++D D ++ KI LS+K + ++  
Sbjct: 243 DKVTVKVIDVDPEKKKISLSLKQLQEDPW 271



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D     ++ S    +    +   +I +  +V +I  G+VVKV+  GA V 
Sbjct: 330 DRVKVKIKDIDKEKRTLSLSYREALG---DPWDNIEEKYKVGEIVDGKVVKVLPTGAIVE 386

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
                 G V +S++S   V +  DVVKE   V  K+L  D +  +++LS+K   ++  + 
Sbjct: 387 LEEYVSGFVPVSEMSWNFVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDPWQK 446

Query: 698 I 698
           +
Sbjct: 447 V 447



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++    P  E+   P  ++ +V+ +G KV       T   +++D +      S    +  
Sbjct: 217 EVVGLIPASEVSWDPSQKVHDVLNVGDKV-------TVKVIDVDPEKKKISLSLKQLQ-- 267

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDV 663
              +   ++ +   V  + +G V  ++ FG FV      +GLVHIS++    V     ++
Sbjct: 268 --EDPWNTVEEKYPVGSVVEGVVKSIVPFGFFVMIEPGVEGLVHISEVFWGNVRRDLKEL 325

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++EGD V VK+ D D   + + LS +    +    I
Sbjct: 326 IREGDRVKVKIKDIDKEKRTLSLSYREALGDPWDNI 361



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 12/131 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  E+     D++ +V+    +V   I       ++ID +      S       A
Sbjct: 391 VSGFVPVSEMSWNFVDRVEDVVKESSEVKTKI-------LSIDKENRRMRLSLKQ----A 439

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVV 664
             +  + +    +V    +G++ +++  GA V   G   +  +  SQ++ +RV    D +
Sbjct: 440 TEDPWQKVHTELKVGDYVEGKITRLIKSGAVVMVDGYGVEAFLPASQVAMKRVENLEDAI 499

Query: 665 KEGDTVWVKLL 675
           K G+    K++
Sbjct: 500 KIGEHRRFKII 510


>gi|187935343|ref|YP_001884415.1| hypothetical protein CLL_A0161 [Clostridium botulinum B str. Eklund
           17B]
 gi|188588644|ref|YP_001919608.1| hypothetical protein CLH_0154 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251779823|ref|ZP_04822743.1| putative RNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|187723496|gb|ACD24717.1| putative RNA-binding protein [Clostridium botulinum B str. Eklund
           17B]
 gi|188498925|gb|ACD52061.1| putative RNA-binding protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243084138|gb|EES50028.1| putative RNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 138

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   I +G VV + +FGAF+   G + GLVHIS+++   V    + +KE D V VK+
Sbjct: 1   MTLEAGNILEGIVVNITNFGAFIEVEG-KTGLVHISEVADSYVKDIREHLKEQDKVKVKV 59

Query: 675 LDFDDRGKIKLSMKVVD 691
           +  DD GKI LS+K  +
Sbjct: 60  ISIDDNGKISLSIKQAN 76


>gi|163739053|ref|ZP_02146466.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis BS107]
 gi|161387858|gb|EDQ12214.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis BS107]
          Length = 559

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLSEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPW 272



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDGAKRRVSLGLKQTMRNPWE 360



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 202 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVI---------- 251

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++  +    +G   P   +       I +      +  G + +  +
Sbjct: 252 KINKETHRISLGMKQLQEDPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHV 311

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +                  R       +       
Sbjct: 312 SEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETHPEGTQ 371

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + + D ++
Sbjct: 372 VEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVSAVVSEVDVEK 431

Query: 681 GKIKLSMKVV 690
            +I LS+K +
Sbjct: 432 ERISLSIKAL 441



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + + G  V + G +   +  S LS +R  +  +    G
Sbjct: 444 DKFAEAVGGVKRGSIVTVNVTAIEEGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 502

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 503 DKVDVRVTNVDGKTRRLGLSIKAREIAEEKEAV 535


>gi|197117381|ref|YP_002137808.1| 30S ribosomal protein S1 [Geobacter bemidjiensis Bem]
 gi|197086741|gb|ACH38012.1| RNA-binding S1 domain protein [Geobacter bemidjiensis Bem]
          Length = 400

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 11/183 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  A          +  E+             F P  +I     +   + IG       
Sbjct: 110 QLEEAYAAGIPVGGTVEKEVKGGFEVKVAGSRAFCPFSQIALRRVEDTASFIGKQLSFKI 169

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
               + G  +       V   +    E++  ++ ++       V +  KG V  + DFGA
Sbjct: 170 VEYAENGRNI------VVSHRALLEEEMQQQKDALKE---TLNVGQRVKGTVTSLRDFGA 220

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   GA +GL+ +S+++  RV   SDV+  G  V V +   D ++ +I  S+K    + 
Sbjct: 221 FVSI-GAVEGLLPVSEVAWARVNHVSDVLTVGQEVEVVVKGIDWEKNRISFSLKDTLADP 279

Query: 695 GKP 697
            + 
Sbjct: 280 WEE 282



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +                G+V ++  FGAFV      DGL+HIS+L + +R+    +V+ E
Sbjct: 278 DPWEEAASAFPEGSYQNGKVARLTPFGAFVTLGSGVDGLIHISKLGAGKRIQHPREVLAE 337

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           G  V VK+   D ++ +I LS+
Sbjct: 338 GQEVEVKVEGVDREQRRISLSL 359


>gi|296136322|ref|YP_003643564.1| ribosomal protein S1 [Thiomonas intermedia K12]
 gi|295796444|gb|ADG31234.1| ribosomal protein S1 [Thiomonas intermedia K12]
          Length = 567

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             V ++  ++ E     E  + +  + E + +  G V  + D+GAFV   G  DGL+HI+
Sbjct: 173 NNVVLSRRAVVEASQGEERAKLLETLQEGS-LVTGVVKNITDYGAFVDL-GGIDGLLHIT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            L+  RV   S+VV  G  V  K+L FD ++G++ L +K +  +  
Sbjct: 231 DLAWRRVRHPSEVVTPGQEVTAKVLKFDAEKGRVSLGLKQMGDDPW 276



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    ++          G++  + ++GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWHGVSRRYPAGTRLFGKITNIAEYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V++L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVQVLEIDEDRRRISLGMKQCRPNPWDE 365



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S   + +  KI +G V  V   GA +      +G +  S++S ERV    +V+KEG
Sbjct: 448 DPFMSFAALNDKGKIVEGTVKAVDPKGATIDLGSDIEGYLRASEISRERVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 508 DQVSAVVVNIDRKTRNIQLSVKAKD 532



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                           +      G V  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCRPN----PWDEFAANHKRGDKVAGPVKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GL+H+S LS     + S+V   K+G  V   +L  D +R +I L +K +  + 
Sbjct: 398 GLIHLSDLSWNDTGE-SEVRNYKKGQDVEAVVLAIDIERERISLGIKQMLDDP 449


>gi|254474658|ref|ZP_05088044.1| S1 RNA binding domain protein [Ruegeria sp. R11]
 gi|214028901|gb|EEB69736.1| S1 RNA binding domain protein [Ruegeria sp. R11]
          Length = 786

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G  V V + + 
Sbjct: 647 KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVTEV 706

Query: 678 D-DRGKIKLSMK 688
           D  R +I L+MK
Sbjct: 707 DVPRKRIGLTMK 718


>gi|58039066|ref|YP_191030.1| 30S ribosomal protein S1 [Gluconobacter oxydans 621H]
 gi|58001480|gb|AAW60374.1| SSU ribosomal protein S1P [Gluconobacter oxydans 621H]
          Length = 570

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E   I  G V  + D+GAFV   G  DGL+H++
Sbjct: 176 GNIVVSRRAVLEETRAEQRSELIQGLKEG-MILDGVVKNITDYGAFVDL-GGVDGLLHVT 233

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++ +R+   S+ ++ G  V V+++ F+ D  +I L MK ++ +  + + 
Sbjct: 234 DIAWKRINHPSEALQIGQPVRVQVIRFNPDTQRISLGMKQLEADPWENVA 283



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++         + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 277 DPWENVAIKYPAGARFTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 336

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K V +N  +
Sbjct: 337 SQEVDVMVLDVDSAKRRISLGLKQVQRNPWE 367



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVV 664
            R       +  +V  I +G++  + +FG FV      DG+VH+S LS +   + +    
Sbjct: 362 QRNPWEQFEEEHKVGSIIEGEIRNITEFGLFVGLSADIDGMVHMSDLSWDEPGEAAMSHY 421

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           ++G  V  K+LD D ++ +I L +K + ++     +
Sbjct: 422 EKGQVVKAKVLDVDPEKERISLGIKQLQEDPAADTL 457


>gi|304415504|ref|ZP_07396141.1| 30S ribosomal subunit protein S1 [Candidatus Regiella insecticola
           LSR1]
 gi|304282643|gb|EFL91169.1| 30S ribosomal subunit protein S1 [Candidatus Regiella insecticola
           LSR1]
          Length = 551

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 11/184 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A ++A+     I  ++    + +   +  F P   +   P    +N+     K +  
Sbjct: 98  LEKAYEKAETVTGIIDGKVKGGFTVALNDIRAFLPGSLVDIRPVRDTQNL---ENKELEF 154

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            V +   K N      V ++  ++ E E + E  + +  + E   I KG V  + D+GAF
Sbjct: 155 KVIKLDQKRN-----NVVVSRRAVLENENSAERDQLLESLQEGA-IIKGVVKNLTDYGAF 208

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+HI+ ++ +R+   ++ V  GD + V++L +D +R ++ L +K + ++  
Sbjct: 209 VDL-GGVDGLLHITDMAWKRIKHPNECVCVGDEINVRVLKYDAERTRVSLGLKQLAEDPW 267

Query: 696 KPIV 699
             I 
Sbjct: 268 VSIA 271



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
           A +   SI      +   KG+V  + D+G FV      +GLVH+S++    +    + VV
Sbjct: 263 AEDPWVSIALRYPESSKLKGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPAKVV 322

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             GD V V +LD D DR +I L +K    N  +
Sbjct: 323 SLGDEVEVMVLDIDGDRRRISLGLKQCKCNPWQ 355



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID D           +        +   +  +     KG++  + DFG F+   G  D
Sbjct: 333 LDIDGDRRRISLGLKQCKCN----PWQKFDETHKKGDCVKGKIKSITDFGIFIGLEGFID 388

Query: 645 GLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +         D V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 389 GLVHLSDICWH--KSGEDAVRKYKKGDEIEAVVLQVDAERERISLGVKQLVEDP 440


>gi|160889663|ref|ZP_02070666.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492]
 gi|156860655|gb|EDO54086.1| hypothetical protein BACUNI_02090 [Bacteroides uniformis ATCC 8492]
          Length = 704

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 14/164 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M+K L  S  +L     R   + I P++  +   +G   ++ I+++   K   D  
Sbjct: 554 IVEQMAKDLGCSVAEL--IANRELRLKINPERYLSPT-VGMPTLKDILQELD-KPGRDPR 609

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +K        I    + +R+I+D+ E  ++  G V  + +FGAFV      +GLVH+S
Sbjct: 610 GPIK--------IFEFDKNVRTISDLREGMEL-PGIVGNITNFGAFVDIGIKENGLVHLS 660

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           QL+   ++  ++VV     + VK+L  D DR +I+L+MK V+QN
Sbjct: 661 QLADRFISDPNEVVSIHQHIRVKVLSIDMDRKRIQLTMKGVEQN 704


>gi|327440789|dbj|BAK17154.1| ribosomal protein S1 [Solibacillus silvestris StLB046]
          Length = 380

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           I  G V +++ FGAFV      +GLVHISQ+S + +    +V+K+G  V VK+L+ ++  
Sbjct: 275 ILTGTVKRLVTFGAFVEVFPGVEGLVHISQISHKHITTPHEVLKDGQEVEVKVLEVNEAE 334

Query: 681 GKIKLSMKVVDQNTGKP 697
            ++ LS+K + +++   
Sbjct: 335 KRLALSIKALQEDSASD 351



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   D    ++  S  A ++  +   +           + +G V ++  FGAF+   G 
Sbjct: 151 KITELDKEKGRLILSHRAVLDEEKASKKQQVIQNIHQGDMLEGTVQRLAKFGAFIDL-GG 209

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            DGLVHISQ++ E V   S V++EG +V VK+L  D    ++ LS+K         I
Sbjct: 210 IDGLVHISQVAHEHVEDISTVLQEGQSVTVKVLSVDIPNERVSLSIKDTLPGPWTDI 266



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           EM        +   I KG   +V +    V   GA  DG++ IS+LS+  + K SD+V  
Sbjct: 4   EMNLGSNQKFQEGDIVKGVAEQVEEKSVTVSVEGAPFDGIIPISELSSLHIEKASDIVSV 63

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVD 691
           GD + + +   ++   + LS + VD
Sbjct: 64  GDQLELMITKVEEENFV-LSKRKVD 87


>gi|163741706|ref|ZP_02149096.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis 2.10]
 gi|161384879|gb|EDQ09258.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis 2.10]
          Length = 553

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLSEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPW 266



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVDVMVLEIDGAKRRVSLGLKQTMRNPWE 354



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I ++   +K+  I          
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVI---------- 245

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++  +    +G   P   +       I +      +  G + +  +
Sbjct: 246 KINKETHRISLGMKQLQEDPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHV 305

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +                  R       +       
Sbjct: 306 SEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETHPEGTQ 365

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + + D ++
Sbjct: 366 VEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVSAVVSEVDVEK 425

Query: 681 GKIKLSMKVV 690
            +I LS+K +
Sbjct: 426 ERISLSIKAL 435



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + + G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSIVTVNVTAIEEGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKVDVRVTNVDGKTRRLGLSIKAREIAEEKEAV 529


>gi|58581848|ref|YP_200864.1| transcription-related protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623748|ref|YP_451120.1| transcription-related protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576599|ref|YP_001913528.1| S1 RNA binding domain protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426442|gb|AAW75479.1| transcription-related protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367688|dbj|BAE68846.1| transcription-related protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521051|gb|ACD58996.1| S1 RNA binding domain protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 786

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   + +G V  V  FGAFV     +DG
Sbjct: 621 DILKELEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           LVHIS LS   V    DVVK GD + VK+L+ D  R +I LS ++ D
Sbjct: 681 LVHISALSETFVKDPRDVVKAGDIIKVKVLEVDVARKRIALSCRLSD 727


>gi|303247107|ref|ZP_07333382.1| RNA binding S1 domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491533|gb|EFL51418.1| RNA binding S1 domain protein [Desulfovibrio fructosovorans JJ]
          Length = 508

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 111/297 (37%), Gaps = 27/297 (9%)

Query: 422 TLRIVSEITESDGSSSMATVCG-----SSLALMDAGVPISKPVAGIA-MGLVKDGDDFII 475
           TL +VS     D       + G     +  A  +AGVP+   V      G   +      
Sbjct: 83  TLYVVS--LRGDEVLLSKALTGQGGAEALRAAFEAGVPVEGKVTASRKGGFDVEILHRRA 140

Query: 476 LSDISGDEDHLGH-MDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
              +S  +       +  V  T S  IT  + D +   +S   ++   +     R     
Sbjct: 141 FCPVSQIDIAFTENPEAHVGQTYSFAITTFERDGRNIVVSRRKLLEEERAESELRFLESV 200

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
               V+      +  F        + P     V     ++     E+    V++    TV
Sbjct: 201 NPGDVIP---AVITRFATFGAFAEVAPGLEGLV--HLSELSWSRAEKPEDAVSLGQAVTV 255

Query: 594 KIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           K+ +    +    R          +   S+++   V    +G+V ++ DFGAFV      
Sbjct: 256 KVLAFDRDKKGRPRISLSIKQAGPDPWDSVSEKFAVGDKVEGKVTRLADFGAFVELAPGI 315

Query: 644 DGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +GL+H+S++S   R+AK SDVV  GD V V + D D  + +I LS+K    +  + +
Sbjct: 316 EGLIHVSEMSHTRRIAKPSDVVNPGDVVTVSIKDIDLAKRRISLSLKEAAGDPWEKV 372



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE-------AAREMIRSITD 615
           I  +I +        + +    VN  D  TV I    LA+         AA +    + +
Sbjct: 315 IEGLIHVSEMSHTRRIAKPSDVVNPGDVVTVSIKDIDLAKRRISLSLKEAAGDPWEKVPE 374

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
              V    +G V     +G F++      GL+  S+L       T + VK GDTV V + 
Sbjct: 375 TFTVGATVEGIVENRQQYGLFINLAPGVTGLLPASKLRDALEPATYEKVKSGDTVPVIVS 434

Query: 676 DFDDRGK 682
           + D   +
Sbjct: 435 EIDTENR 441


>gi|296448352|ref|ZP_06890241.1| Tex-like protein-like protein [Methylosinus trichosporium OB3b]
 gi|296254144|gb|EFH01282.1| Tex-like protein-like protein [Methylosinus trichosporium OB3b]
          Length = 765

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 18/150 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-------- 611
              I+ +IG   ++ +        +  +D+   +   +   AE+E      R        
Sbjct: 580 KTDIKQLIGNAAELRKM-----KPQTFVDESFGLPTVTDIFAELEKPGRDPRPAFKTATF 634

Query: 612 ----SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +   + +G V  V  FGAFV     +DGLVHIS +S   V     V K G
Sbjct: 635 QEGVEKISDLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISAMSKTFVKDPRAVAKPG 694

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D V VK+L+ D  R ++ L+M++ D    +
Sbjct: 695 DIVKVKVLEVDVPRKRVSLTMRLDDAPGPR 724


>gi|291534309|emb|CBL07421.1| Ribosomal protein S1 [Roseburia intestinalis M50/1]
          Length = 303

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 7/197 (3%)

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV---EIMA 557
           T +Q D   G I  +        A      ++ + + V    +  +              
Sbjct: 74  TVVQTDDGAGNIVLSKKEANDILAWDKLKQMMEDETTVKVRIKESVPSGVVTYLEGIRAF 133

Query: 558 IPPDQI-RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           IP  QI  + +      I   +E     V+ + +  V    +   E EA     +    +
Sbjct: 134 IPASQITLDYVEDTDAWIGKEIEVRVITVDPEKEKLVLSGKAVAREAEAEERSHKISMII 193

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P    + +G V  +M +GAF++      GLVHISQ+   R+ K S+V+KEG  V  K+L+
Sbjct: 194 P--GTVLEGTVETLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKEGQKVKAKVLN 251

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D  KI LSMK +++ 
Sbjct: 252 TND-NKISLSMKALEEE 267


>gi|289449430|ref|YP_003475339.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289183977|gb|ADC90402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 704

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +E    + + +        S  +            + +   V  I +G V  + DFGAFV
Sbjct: 475 IEILVTQFDPEKKRMRVAGSRRVLLNRERAAKAAEVWNTLAVGDIREGVVRSLTDFGAFV 534

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS  R+   S+V+K GD + V + +FD +R +I L  K ++ +   
Sbjct: 535 DI-GGVDGLVHVSELSWNRIKHPSEVIKVGDHIQVYVKEFDPERKRISLGYKRIEDDPYH 593

Query: 697 PI 698
            I
Sbjct: 594 DI 595



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I     +  I  G+VV++  FGAFV      D L HISQ+ST R+AK S+V+KEG
Sbjct: 590 DPYHDIETRFPIGTIVHGKVVRMFPFGAFVEIADGVDALCHISQISTARLAKPSEVLKEG 649

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVV 690
             V  ++++  +++ +I +S+K V
Sbjct: 650 MEVDARVMEVSNEQRRISISIKEV 673


>gi|259415557|ref|ZP_05739478.1| ribosomal protein S1 [Silicibacter sp. TrichCH4B]
 gi|259348787|gb|EEW60549.1| ribosomal protein S1 [Silicibacter sp. TrichCH4B]
          Length = 558

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLSEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPW 272



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDLVGAKYPLESVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDGAKRRVSLGLKQTMRNPWE 360



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER        +
Sbjct: 356 RNPWEVFAETHPEGTQVEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYR 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K +
Sbjct: 416 KGDMVSAVVSEVDVEKERISLSIKAL 441



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V  + D G  V + G +   +  S LS +R  +  +     D + V++ +
Sbjct: 453 VKRGSIVTVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRADQRPERFSVSDKIDVRVTN 511

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 512 IDSKTRRLGLSIKAREIAEEKEAV 535


>gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 399

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE     + I+ +    I S   A +E        +        +  G V  V DFG FV
Sbjct: 187 VELPLKVIEINRNRNRLILSERQALVETRESKKDELLTSLREGDVRDGVVSSVCDFGVFV 246

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              GA DGLVH+S++S  RV    +V+K GD V V +L+ D +R +I LS+K       
Sbjct: 247 DIGGA-DGLVHLSEISWSRVKHPGEVLKVGDKVKVAILNIDHERKRIALSIKRTQSEPW 304



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    + +  ++ +I +G + ++  FGAF       +GL+HIS++  ER+    +V+ EG
Sbjct: 302 EPWTRVAERYQLGQIVEGTITQLASFGAFARIEDGVEGLIHISEMGDERIQHPREVLSEG 361

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
             V  +++  D  R ++ LS+++  + T
Sbjct: 362 QVVQARIIRIDPARKRMGLSLRLHAEPT 389


>gi|313623122|gb|EFR93389.1| 30S ribosomal protein S1 [Listeria innocua FSL J1-023]
          Length = 381

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I++   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 262 PWDGISEKAPVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQ 321

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           TV VK+L+ + D  ++ LS+K +     + 
Sbjct: 322 TVEVKVLEVNEDDKRLSLSIKDLLDAPVEE 351



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVENEKANQKQALLNEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   + ++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYKHIATPQEALEEGQKVKVKVIGIDPENERISLSIKATLPGPW 263



 Score = 41.4 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V   G++ DG+V IS+LS   V   SDVV   DT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVETASDVVSVSDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDVLV-LSKRKVDAE 89


>gi|294101537|ref|YP_003553395.1| Tex-like protein protein-like protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616517|gb|ADE56671.1| Tex-like protein protein-like protein [Aminobacterium colombiense
           DSM 12261]
          Length = 718

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   +  G +  V  FGAFV     +DGLVHIS LS + ++    VV  G  V V ++D 
Sbjct: 640 KKGMVLPGIITNVTAFGAFVDIGVHQDGLVHISALSDKYISSPHAVVSPGQQVKVIVMDI 699

Query: 678 D-DRGKIKLSMKVVD 691
           D DR +I LSMK  D
Sbjct: 700 DMDRKRISLSMKTSD 714


>gi|283778165|ref|YP_003368920.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM
           6068]
 gi|283436618|gb|ADB15060.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068]
          Length = 502

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +  G V ++  ++ E E        +  +   +   +G V K+ DFGAFV   G  DGL+
Sbjct: 263 ERRGNVVLSRRAVLEREKESAKKELMASIAIGDMR-EGVVRKIQDFGAFVDM-GGIDGLI 320

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           HISQ+S +R+   S+++ EG  V V++   D + GKI LS++   ++  
Sbjct: 321 HISQMSWDRIKHPSEILTEGQKVRVRIEKIDPETGKIGLSLRNQQEHPW 369



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +  + I   G+ +R  +E+        + G + ++  +  E          I     V  
Sbjct: 331 KHPSEILTEGQKVRVRIEKIDP-----ETGKIGLSLRNQQE-----HPWTGIDQKFPVGS 380

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG V ++  FGAFV      +GL+HIS+L+  RV    +VVKEG  V VK+L    + 
Sbjct: 381 IVKGTVSRLAAFGAFVKLSPGVEGLIHISELAHNRVYAVQNVVKEGQEVEVKILTVSAED 440

Query: 681 GKIKLSMKVVDQNTGK 696
            +I LS+K   Q   K
Sbjct: 441 QRISLSLKATLQAPAK 456



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G      G   G +  SQ    RV    D+V  G  +   + + ++ RG + LS + V +
Sbjct: 220 GLECEIAGGVRGFIPASQAGLYRVENLGDLV--GQRITCVITEANERRGNVVLSRRAVLE 277

Query: 693 NTGK 696
              +
Sbjct: 278 REKE 281


>gi|197303695|ref|ZP_03168732.1| hypothetical protein RUMLAC_02424 [Ruminococcus lactaris ATCC
           29176]
 gi|197297215|gb|EDY31778.1| hypothetical protein RUMLAC_02424 [Ruminococcus lactaris ATCC
           29176]
          Length = 716

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   + +G   +R IV++             K A     E+               + 
Sbjct: 596 KKLAEELEIGEITLRDIVKELE-----------KPARDPRDEMPKPILRTDVLEMKDLKE 644

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             + KG V  V+DFGAFV     +DGLVHISQ++ + +    + V  GD V VK++  D 
Sbjct: 645 GMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQITDKFIKHPLEAVSVGDIVDVKVMSVDM 704

Query: 679 DRGKIKLSMKVV 690
            + +I+L+M+ +
Sbjct: 705 KKKRIQLTMRGI 716


>gi|260584655|ref|ZP_05852401.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
 gi|260157678|gb|EEW92748.1| S1 RNA-binding protein [Granulicatella elegans ATCC 700633]
          Length = 731

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 88/502 (17%), Positives = 175/502 (34%), Gaps = 67/502 (13%)

Query: 221 LAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFS 280
           L K+  KE     S   + ++  +    K  +  +    E+ +R +  +  + + +  F 
Sbjct: 254 LEKIMKKEISKTASPSATYIKAAIEDSYKRFIAPAI---EREIRSELTEKAQTQAIEIFG 310

Query: 281 SEHSSWN-----EGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT 335
               +       +G ++   +       +  ++D+  ++  +    +          +R 
Sbjct: 311 ENLQNLLLQAPMKGHVILGLDPAYRTGCKLAIIDETGKVLDKAV--IYPHQGASD-FKRA 367

Query: 336 HGSSLFIRG--DTQAIVVV----TLGTREDEQYVDSLSGTQRNDFMMHYNFL---PCATG 386
              + F +   D Q  +V     T     +    + + G  R  +    +       +  
Sbjct: 368 QAGTTFKKLLEDYQVTLVAIGNGTASRESEAFVSEQIKGINRKIYYTIVSEAGASVYSAS 427

Query: 387 EVSRMGAPSRREIGHGRL--ARRAIHPVLPQTAQFPYTLRI------VSE---------I 429
           E++R   P  +      +  ARR   P+       P  + +      VS+         +
Sbjct: 428 EIARKEFPDYQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKQLDARLDIV 487

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            E+  +     V  +S AL++    ++K  A   +    +   F   S +      LG  
Sbjct: 488 VETAVNKVGVNVNTASAALLEHIAGLTKTTAANVVAFRDENGKFTNRSQLKKVPR-LGPK 546

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
            F+ A     I   +  +    I       A +        IL ++     E   +  E 
Sbjct: 547 AFEQAVGFLRIVDGKNPLDGTDIHPESYEFAEK--------ILEKIQATKVEIGTEKVEQ 598

Query: 550 TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
                + A+    + + +G+G + +  I             G  K       E++     
Sbjct: 599 A----LSALDKKALSSELGIGIETLELIFA-----------GLTKPGRDPREEVDPPI-- 641

Query: 610 IRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +RS     E  ++    +G +  V+DFGAFV     +DGLVHIS++    V   SDVV  
Sbjct: 642 LRSDVLSMEDIQVGMELQGTIRNVVDFGAFVDIGVKQDGLVHISRMKKGFVKHPSDVVAV 701

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  +G++ LSM
Sbjct: 702 GDIVTVWVTEIDMKKGRVSLSM 723


>gi|153871035|ref|ZP_02000305.1| RNA binding S1 domain protein [Beggiatoa sp. PS]
 gi|152072497|gb|EDN69693.1| RNA binding S1 domain protein [Beggiatoa sp. PS]
          Length = 836

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++   +E I +I D+ E + + +G V  V +FGAFV      DGLVHIS LS + V    
Sbjct: 674 KMPHFKEGIENIEDL-EADMVLEGVVTNVTNFGAFVDVGVHHDGLVHISALSRDYVKDPR 732

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            VVK GD V VK+L+ D  R ++ L+M
Sbjct: 733 AVVKAGDVVKVKVLEIDLKRQRVALTM 759


>gi|160878183|ref|YP_001557151.1| RNA-binding S1 domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160426849|gb|ABX40412.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg]
          Length = 303

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 9/131 (6%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSITDVPEV 619
             + +V    GKV++ IV      +  D +   + +++  +   E A+E    I+ V + 
Sbjct: 145 SYVEDVSTFVGKVLKVIV------ITADKEANKLVLSAKEVLREEEAKEKSHKISQVQKG 198

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             +  G V K+M FGAFV       GLVHISQ+  +R+   ++V+KEG  V VK+LD  D
Sbjct: 199 I-VTTGIVDKLMPFGAFVSIGEGLSGLVHISQICGKRIKSPAEVLKEGQEVKVKVLDVKD 257

Query: 680 RGKIKLSMKVV 690
            GKI LS+K V
Sbjct: 258 -GKISLSIKAV 267



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + KG V+ + D    V    + +G++ + +LS +        V  G+ +   +L  D  
Sbjct: 26  DLVKGTVIGISDTEVTVDLSYSSEGIIKLEELSNDPRFSIKADVTIGEEITAMILSEDKE 85

Query: 681 GKIKLSMKVVD 691
           G + LS K  D
Sbjct: 86  GNLLLSKKKAD 96


>gi|229175595|ref|ZP_04303104.1| RNA binding S1 domain protein [Bacillus cereus MM3]
 gi|228607853|gb|EEK65166.1| RNA binding S1 domain protein [Bacillus cereus MM3]
          Length = 119

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G+V  + D+GAFV       GLVHIS+++   V    D +K GDTV VK+L  D + 
Sbjct: 15  VVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKIGDTVEVKVLSIDEEH 74

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            K+ LS+K   +  G+ ++
Sbjct: 75  RKMSLSLKAARRKQGRILI 93


>gi|160900156|ref|YP_001565738.1| 30S ribosomal protein S1 [Delftia acidovorans SPH-1]
 gi|160365740|gb|ABX37353.1| ribosomal protein S1 [Delftia acidovorans SPH-1]
          Length = 561

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L F
Sbjct: 191 EGA-IVQGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    ++     +    G+V  + D+GAFV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWMGVSRRYPSSTRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPTKLVTL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCKANPWQE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 34/258 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  ++    D+ G +   H+  M ++     S +     +     I+  I+ 
Sbjct: 193 AIVQGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVQAGQE-----ITAKILK 247

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P    +      I +      +  G + 
Sbjct: 248 FDTEKNRVS-----LGLKQMGDDPWMGVSRRYPSSTRLFGKVTNIADYGAFVELEPGIEG 302

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      NI     V +       +    E                 +      +
Sbjct: 303 LVHVSEMDWTNKNIAPTKLVTLGDEVEVMVLEIDEDKRRISLGMKQCKANPWQEFAQNTK 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDF 677
                KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  
Sbjct: 363 RGDRVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAV 422

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R +I L +K +D + 
Sbjct: 423 DVERERISLGIKQLDSDP 440



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +I  G+V  V   GA +       G +  S+++ +RV     V+KEG
Sbjct: 439 DPFTTFVTVNDKGQIVSGKVKTVDARGAEIDLGEDIIGYLRASEIAVDRVEDARSVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D +   +++ D + + I+LS+K  DQ
Sbjct: 499 DEITAVVVNVDRKTRNIQLSIKAKDQ 524


>gi|157690845|ref|YP_001485307.1| hypothetical protein BPUM_0047 [Bacillus pumilus SAFR-032]
 gi|194017967|ref|ZP_03056574.1| S1 family RNA-binding protein [Bacillus pumilus ATCC 7061]
 gi|157679603|gb|ABV60747.1| S1 family RNA-binding protein [Bacillus pumilus SAFR-032]
 gi|194010304|gb|EDW19879.1| S1 family RNA-binding protein [Bacillus pumilus ATCC 7061]
          Length = 132

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K G+ V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEHLKVGEQVEVKVINV 63

Query: 678 DDRGKIKLSMKVV----DQNTGKP 697
           +  GKI LS+K       Q   +P
Sbjct: 64  EKDGKIGLSIKKAKDRPQQQQSRP 87


>gi|154505455|ref|ZP_02042193.1| hypothetical protein RUMGNA_02984 [Ruminococcus gnavus ATCC 29149]
 gi|153794248|gb|EDN76668.1| hypothetical protein RUMGNA_02984 [Ruminococcus gnavus ATCC 29149]
          Length = 717

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVP 617
              ++   + +G   +R IV++             K A     E+               
Sbjct: 594 DYKKLSQELEIGEITLRDIVKELE-----------KPARDPRDEMPKPILRTDVLDMKDL 642

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I KG V  V+DFG FV     +DGLVHISQ++ + +    + V  GD V VK++  
Sbjct: 643 KEGMILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKYIKHPLEAVSVGDIVDVKVMSV 702

Query: 678 D-DRGKIKLSMKVV 690
           D  + +I+L+M+ +
Sbjct: 703 DLKKKRIQLTMRGI 716


>gi|294340558|emb|CAZ88943.1| 30S ribosomal protein S1 [Thiomonas sp. 3As]
          Length = 567

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             V ++  ++ E     E  + +  + E + +  G V  + D+GAFV   G  DGL+HI+
Sbjct: 173 NNVVLSRRAVVEASQGEERAKLLETLQEGS-LVTGVVKNITDYGAFVDL-GGIDGLLHIT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            L+  RV   S+VV  G  V  K+L FD ++G++ L +K +  +  
Sbjct: 231 DLAWRRVRHPSEVVTPGQEVTAKVLKFDAEKGRVSLGLKQMGDDPW 276



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    ++          G++  + ++GAFV      +GLVH+S++    +    S VV+ 
Sbjct: 274 DPWHGVSRRYPAGTRLFGKITNIAEYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKVVQL 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V++L+ D DR +I L MK    N    
Sbjct: 334 GDEVEVQVLEIDEDRRRISLGMKQCRANPWDE 365



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S   + +  KI +G V  V   GA +      +G +  S++S ERV    +V+KEG
Sbjct: 448 DPFMSFAALNDKGKIVEGTVKAVDPKGATIDLGSDIEGYLRASEISRERVEDARNVLKEG 507

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 508 DQVSAVVVNIDRKTRNIQLSVKAKD 532



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                           +      G V  + DFG F+   G  D
Sbjct: 342 LEIDEDRRRISLGMKQCRAN----PWDEFAANHKRGDKVAGPVKSITDFGVFIGLPGGID 397

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GL+H+S LS     + S+V   K+G  V   +L  D +R +I L +K +  + 
Sbjct: 398 GLIHLSDLSWNDTGE-SEVRNYKKGQDVEAVVLAIDIERERISLGIKQMLDDP 449


>gi|24379213|ref|NP_721168.1| transcriptional accessory protein [Streptococcus mutans UA159]
 gi|24377125|gb|AAN58474.1|AE014917_5 conserved hypothetical protein; possible transcriptional accessory
           protein [Streptococcus mutans UA159]
          Length = 708

 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           R ++ ++  +++   + +G + ++ I+        ++ DD         + E+       
Sbjct: 575 RSKLRSVAIEKVATEVNLGQETLKDIIADLLKPGRDLRDDFAAPQLRQDVLELS------ 628

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  ++ +  +G +  V+DFGAFV      DGL+HISQ+S   V   S +V  GD V
Sbjct: 629 -----DLKIGQQLEGTIRNVVDFGAFVDIGLHEDGLIHISQMSKNFVKHPSQIVAVGDVV 683

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            V +   D +RGK+ LS+  +++
Sbjct: 684 TVWVSKIDIERGKVNLSLVALNE 706


>gi|329577264|gb|EGG58728.1| S1 RNA binding domain protein [Enterococcus faecalis TX1467]
          Length = 159

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKVTSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
            D GKI LS+++  +  
Sbjct: 64  GDDGKIGLSIRISQEPA 80


>gi|313230404|emb|CBY18619.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVK 665
               +   P+V KIY G+V  +  FG F+   G     +GL HIS+L +ERV + SDVV 
Sbjct: 220 KREQVEKDPQVGKIYNGKVTSLKHFGCFITVEGLLKPIEGLCHISELRSERVNEVSDVVA 279

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
               V VK+L F    +  LSMK VDQ TG+ +
Sbjct: 280 RFQQVKVKVLSFSGT-RTSLSMKDVDQATGEDL 311


>gi|282856237|ref|ZP_06265520.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Pyramidobacter
           piscolens W5455]
 gi|282585996|gb|EFB91281.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Pyramidobacter
           piscolens W5455]
          Length = 143

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 44/78 (56%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            +  G V ++M +GAFV     +  ++HISQLS + +     V++    +  K++  D++
Sbjct: 8   DVVTGVVEQIMPYGAFVRLQSGQKAMIHISQLSHKFIKSVDAVLQPQQEIKAKVIKIDEK 67

Query: 681 GKIKLSMKVVDQNTGKPI 698
           G+I LS+K +++    P+
Sbjct: 68  GRIDLSLKALEEPPTVPV 85


>gi|290580778|ref|YP_003485170.1| hypothetical protein SmuNN2025_1252 [Streptococcus mutans NN2025]
 gi|254997677|dbj|BAH88278.1| conserved hypothetical protein [Streptococcus mutans NN2025]
          Length = 708

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           R ++ ++  +++   + +G + ++ I+        ++ DD         + E+       
Sbjct: 575 RSKLRSVAIEKVATEVNLGQETLKDIIADLLKPGRDLRDDFAAPQLRQDVLELS------ 628

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  ++ +  +G +  V+DFGAFV      DGL+HISQ+S   V   S +V  GD V
Sbjct: 629 -----DLKIGQQLEGTIRNVVDFGAFVDIGLHEDGLIHISQMSKNFVKHPSQIVAVGDVV 683

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQ 692
            V +   D +RGK+ LS+  +++
Sbjct: 684 TVWVSKIDIERGKVNLSLVALNE 706


>gi|168070622|ref|XP_001786877.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660263|gb|EDQ48309.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 398

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 11/131 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             +++  V+ +G   +R I+E           G        L         I  +T   E
Sbjct: 272 DVEKLAEVLEVGVPTLRDILESLQRP------GRDPREELPLPIFRTDVLKIEDLTPGME 325

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +     G V  V+DFGAFV      DGLVHISQLS+  V    DVV  GD V V +L+ D
Sbjct: 326 LQ----GTVRNVIDFGAFVDIGIKSDGLVHISQLSSGYVKHPMDVVSVGDNVTVWVLNVD 381

Query: 679 -DRGKIKLSMK 688
             +G++ L+M+
Sbjct: 382 LKKGRVGLTMR 392


>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax SaI-1]
 gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
          Length = 246

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 87/248 (35%), Gaps = 21/248 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVG---LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             + ++  R+DGR  +  R I   VG   +     G + +  G+T+ +  +        Q
Sbjct: 5   EYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYI--------Q 56

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               L    ++          P    E  +               R     ++       
Sbjct: 57  GPTELKKSEEKCSIKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLYKN 116

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I   I E DG    A +    LAL+DAG+ I   ++  ++  +++     IL D +
Sbjct: 117 SEINIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLFLQN----RILVDGN 172

Query: 481 GDEDHLGHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E + G  +  +        I  ++ D +   +  +I    ++      +++ N M   
Sbjct: 173 QLEINSGAPELTMVIELNTHKIVLLEFDAE---VPIDIFEAMVRTCMDCCINLGNVMKLT 229

Query: 539 LSESRLQL 546
           + E+ ++L
Sbjct: 230 VKENAIKL 237


>gi|68171776|ref|ZP_00545121.1| RNA binding S1 [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998801|gb|EAM85508.1| RNA binding S1 [Ehrlichia chaffeensis str. Sapulpa]
          Length = 567

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 15/191 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A ++ +     I + +    +     +  F P      +   Q++++  + GK 
Sbjct: 134 WQKLEEAAEKKEDVEGVIFSSIKCGYTVDIKGVVAFLPASH---VALRQVKDITPLLGKK 190

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
            +  + +   K      G + ++  ++ E   A      ++ + E   I +G+V  +  +
Sbjct: 191 QKFRILKMDKK-----QGNIVVSRKAILEESLADAKSLYLSQLNEG-DIIEGKVKSITKY 244

Query: 634 GAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++  D +  KI L +
Sbjct: 245 GVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIKIDRENKKISLGV 304

Query: 688 KVVDQNTGKPI 698
           K ++++    I
Sbjct: 305 KQLEESPWSNI 315



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              +I     V+ I+KG V  + ++G FV      +GLVH+S++S  + +   + +   G
Sbjct: 311 PWSNIEKKYPVDSIHKGIVTSIEEYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRG 370

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + + VK+L  D  + ++ LSMK    N  +
Sbjct: 371 EEIQVKVLSIDTAKSRMSLSMKRCQDNPWQ 400



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTE-RVAKTSD 662
             ++ T    +  I   ++  + + G FV           +GL+  ++LS         +
Sbjct: 398 PWQAFTLKYPLGSIVSTKIKNITNLGIFVSFQDNTLNDGIEGLIRTTELSWSLSPEAAIN 457

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
               GD+V  K+L  + ++ KI L +K ++ + 
Sbjct: 458 KYNVGDSVEAKILMINPNKSKIDLGVKQLEYDP 490


>gi|47097081|ref|ZP_00234651.1| ribosomal protein S1, putative [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47014526|gb|EAL05489.1| ribosomal protein S1, putative [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 355

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
             + +     G  +   V +        ++  V ++  ++ E E A +    ++++ E  
Sbjct: 197 HFVEDFADYKGTTLTFKVVEFEP-----ENNRVILSHRAVVETEKASQKQALLSEIKEG- 250

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G V ++ +FGAFV   G  DGLVHISQ+S + +A   +V++EG  V VK++  D  
Sbjct: 251 DVIEGTVQRLANFGAFVDI-GGVDGLVHISQISYKHIATPQEVLEEGQKVTVKVIGIDPE 309

Query: 681 G-KIKLSMKVVDQNTG 695
             +I LS+K       
Sbjct: 310 NERISLSIKATLPGPW 325



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V   G++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 76  EEGDKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 135

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 136 VEDDILV-LSKRKVDAE 151


>gi|311031694|ref|ZP_07709784.1| general stress protein 13 [Bacillus sp. m3-13]
          Length = 135

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 6   EIGSVLTGKVTGIQPYGAFVALDEETQGLVHISEITHGYVKDVNEHLKMGDEVQVKVLSV 65

Query: 678 DDR-GKIKLSMKVVD 691
           D++  KI LS+K   
Sbjct: 66  DEKSNKISLSIKATQ 80


>gi|296110337|ref|YP_003620718.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
 gi|295831868|gb|ADG39749.1| transcription accessory protein [Leuconostoc kimchii IMSNU 11154]
          Length = 731

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G V  V+DFGAFV      DGLVHIS+L+  RV K SDVV  GD + V ++D D+ R 
Sbjct: 658 LQGTVRNVVDFGAFVDLGVKHDGLVHISRLAKRRVKKPSDVVSVGDIINVWVVDIDEKRQ 717

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 718 RIGLTM 723


>gi|269796749|ref|YP_003316204.1| transcriptional accessory protein [Sanguibacter keddieii DSM 10542]
 gi|269098934|gb|ACZ23370.1| transcriptional accessory protein [Sanguibacter keddieii DSM 10542]
          Length = 816

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V     FGAFV     +DGLVH+S LS   V+   +VVK GD V VK+L  D  
Sbjct: 659 MVLEGVVTNCAAFGAFVDVGVHQDGLVHVSALSDRFVSDPREVVKPGDVVTVKVLTVDVR 718

Query: 680 RGKIKLSMKVVDQNTG 695
           RG+I L++++ D   G
Sbjct: 719 RGRIGLTLRLEDPVPG 734


>gi|227520047|ref|ZP_03950096.1| RNA-binding protein [Enterococcus faecalis TX0104]
 gi|227072595|gb|EEI10558.1| RNA-binding protein [Enterococcus faecalis TX0104]
          Length = 159

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDQVTVKVTSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
            D GKI LS++   +  
Sbjct: 64  GDDGKIGLSIRKAQEPA 80


>gi|99080041|ref|YP_612195.1| 30S ribosomal protein S1 [Ruegeria sp. TM1040]
 gi|99036321|gb|ABF62933.1| SSU ribosomal protein S1P [Ruegeria sp. TM1040]
          Length = 558

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLSEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK + ++  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPW 272



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDLVGAKYPLESVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDGAKRRVSLGLKQTMRNPWE 360



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER        +
Sbjct: 356 RNPWEVFAETHPEGTQVEGEVKNITEFGLFIGLDGDIDGMVHLSDLSWDERGEDAIQNYR 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K +
Sbjct: 416 KGDMVSAVVSEVDVEKERISLSIKAL 441



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V  + D G  V + G +   +  S LS +R  +  +    GD V V++ +
Sbjct: 453 VKRGSIVTVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVGDKVDVRVTN 511

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 512 IDSKTRRLGLSIKAREIAEEKEAV 535


>gi|325926365|ref|ZP_08187694.1| transcriptional accessory protein [Xanthomonas perforans 91-118]
 gi|325543244|gb|EGD14678.1| transcriptional accessory protein [Xanthomonas perforans 91-118]
          Length = 787

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   + +G V  V  FGAFV     +DG
Sbjct: 621 DILKELEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 681 LVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTCRLSDTPPAAD 733


>gi|309389981|gb|ADO77861.1| Tex-like protein [Halanaerobium praevalens DSM 2228]
          Length = 723

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
            +   +IL E++  +++ R +      R ++  I   +I + + +G    R I++     
Sbjct: 568 YQAAQNILKEINFKMADIRDKNKVEELRKKLTEINLTKIVSKLEIGIPTARDIIKSLKQ- 626

Query: 585 VNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
                           A + A          +  +   I+KG+V  ++DFGAF+     +
Sbjct: 627 ----------PGRDPRASMPAPIFRKDILKIEDIKPGLIFKGKVRNIVDFGAFIDIGLKQ 676

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           DGL+HIS++S   V    ++V+ G  + V++L  D  RG+I L++K
Sbjct: 677 DGLLHISEMSQMYVNDPFEIVEIGQNIDVQVLAVDQSRGRISLTLK 722


>gi|288922364|ref|ZP_06416555.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
 gi|288346271|gb|EFC80609.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
          Length = 768

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 19/148 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           +R ++ + G  +  ++  T           +DD   +   +  LAE+E      R     
Sbjct: 588 VRRILSVAGGELAALIGDTKTLRGLRPTDFVDDTVGLPTVTDILAELEKPGRDPRPAFRT 647

Query: 617 PEVNK------------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            E  +            + +G V  V  FGAF+     +DGLVH+S +S   V+   DV 
Sbjct: 648 AEFTEGVETLADLTPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSKNFVSDPRDVA 707

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           K GD V VK+LD D  R +I L++++ D
Sbjct: 708 KPGDIVRVKVLDVDIPRKRISLTLRLDD 735


>gi|150395910|ref|YP_001326377.1| RNA-binding S1 domain-containing protein [Sinorhizobium medicae
           WSM419]
 gi|150027425|gb|ABR59542.1| RNA binding S1 domain protein [Sinorhizobium medicae WSM419]
          Length = 768

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQ 626
           ++   ++ +D+   +      LAE+E      R   ++ T    ++ I         +G 
Sbjct: 597 KKLDPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGIDDIKDLKVGMRLEGT 656

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L
Sbjct: 657 VTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVRVTEVDVARKRIGL 716

Query: 686 SMK 688
           SM+
Sbjct: 717 SMR 719


>gi|118566925|gb|ABL01774.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 8/129 (6%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +R+ + + GK +   V +   K N      V ++  ++ E E + +  + + ++ 
Sbjct: 23  VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESENSAKRDQLLENLQ 77

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L F
Sbjct: 78  EGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKF 135

Query: 678 D-DRGKIKL 685
           D +R ++ L
Sbjct: 136 DRERTRVSL 144


>gi|167770447|ref|ZP_02442500.1| hypothetical protein ANACOL_01792 [Anaerotruncus colihominis DSM
           17241]
 gi|167667042|gb|EDS11172.1| hypothetical protein ANACOL_01792 [Anaerotruncus colihominis DSM
           17241]
          Length = 163

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV  I +G+V  +  FGAF+   G + G+VHIS++++  V + +D +     V VK+
Sbjct: 1   MQLEVGSILEGRVTGITKFGAFIELPGGKTGMVHISEVASSYVKEITDYLSMNQMVKVKI 60

Query: 675 LDFDDRGKIKLSMKV 689
           +     GK+ LS+K 
Sbjct: 61  IGITPEGKVSLSIKQ 75


>gi|330993797|ref|ZP_08317729.1| 30S ribosomal protein S1 [Gluconacetobacter sp. SXCC-1]
 gi|329759065|gb|EGG75577.1| 30S ribosomal protein S1 [Gluconacetobacter sp. SXCC-1]
          Length = 571

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E   I  G V  + D+GAFV   G  DGL+H++
Sbjct: 177 GNIVVSRRAVLEETRAEQRSELIQGLKEG-MILDGVVKNITDYGAFVDL-GGVDGLLHVT 234

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++ +R+   S+ ++ G  V V+++ F+ D  +I L MK ++ +  + + 
Sbjct: 235 DIAWKRINHPSEALQIGQPVRVQVIRFNPDTQRISLGMKQLEADPWENVA 284



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++         Y G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 278 DPWENVAIKYPPGARYTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 337

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K V +N  +
Sbjct: 338 SQEVDVMVLDVDSAKRRISLGLKQVQRNPWE 368



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVV 664
            R       +  +V  + +G++  + +FG F+      DG+VH+S LS +   + +    
Sbjct: 363 QRNPWEQFAEEHKVGSVVEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDEPGEVAMSHY 422

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           ++G  V  K+LD D ++ +I L +K + ++     +
Sbjct: 423 EKGQVVKAKVLDVDVEKERISLGIKQLHEDPAADTL 458


>gi|150399202|ref|YP_001322969.1| RNA-binding S1 domain-containing protein [Methanococcus vannielii
           SB]
 gi|150011905|gb|ABR54357.1| RNA binding S1 domain protein [Methanococcus vannielii SB]
          Length = 722

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 543 RLQLGEFTPRVEIMA--IPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSS 599
             ++ + + ++E +      +++ + +  G   +  I+ E      +  DD    +  S 
Sbjct: 579 YNKMNKISEKIESIKDIKNIEKLADKLNTGIPTLLDIIRELEKPGRDPRDDVEKPVLRSD 638

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           + + E  +E             I KG +  ++DFGAFV      DGL+HIS++S   +  
Sbjct: 639 VLKFEDLKE-----------GMILKGTIRNIVDFGAFVDIGVHHDGLIHISEVSDRFIKH 687

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             +V+  GD V V +L  D ++ ++ LS+K
Sbjct: 688 PLEVISVGDVVNVFVLGIDFEKNRVSLSIK 717


>gi|330444481|ref|YP_004377467.1| 30S ribosomal protein S1 [Chlamydophila pecorum E58]
 gi|328807591|gb|AEB41764.1| ribosomal protein S1 [Chlamydophila pecorum E58]
          Length = 580

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N++    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVERRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + ++ KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGELRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + ++ +   +S   ++ A + +K+  L     + ++       + +F   +++  I
Sbjct: 183 KILKINVERRNVVVSRRELLEAERISKKAELIEQITIGELRKGIVKNITDFGVFLDLDGI 242

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 243 DGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHN-----PWED 297

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K   G++VK++ +GAF+      +GL+HIS++S  + V   S++V +GD V 
Sbjct: 298 IEKKYPPGKRVSGKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNVVDPSEIVNKGDEVE 357

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
             +L    D GKI L +K  + N    I
Sbjct: 358 AIVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 103/253 (40%), Gaps = 24/253 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVA 284

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
              + + H   E  +       ++       +I+ + P      I  G + +  I E + 
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVSG-----KIVKLLPYGAFIEIEEGIEGLIHISEMSW 339

Query: 583 AKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPEVNKIYKGQV 627
            K  +D    V       A + + ++                  +I +   +    K ++
Sbjct: 340 VKNVVDPSEIVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVKAEI 399

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + ++GAFV      +GL+HIS +S  ++V+  S++ K+GD V   +L  D +  KI L
Sbjct: 400 RNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGDVVEAVILSVDKESKKITL 459

Query: 686 SMKVVDQNTGKPI 698
            +K +  N    I
Sbjct: 460 GVKQLSANPWDEI 472



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A          P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  D++ 
Sbjct: 466 ANPWDEIEAMFPAGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKVEDIIS 524

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            GDTV  K++  D D  K+ LS+K 
Sbjct: 525 IGDTVHAKVIKLDPDHKKVSLSVKE 549



 Score = 40.7 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD+G + ++     +    R+    I    E   I KGQ+ + +  G  V      +  +
Sbjct: 106 DDEGKIVLS---REKATRQRQ-WEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + +R  + +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINVERRNVVVSRRELLE 203


>gi|315651185|ref|ZP_07904215.1| YhgF like protein [Eubacterium saburreum DSM 3986]
 gi|315486481|gb|EFU76833.1| YhgF like protein [Eubacterium saburreum DSM 3986]
          Length = 717

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++ + + +G   +R IV++      +  D+    I  + + E+E  +E           
Sbjct: 597 KKVSDELEIGEITLRDIVKELEKPGRDPRDEMQKPILRTDVMEMEDLKE----------- 645

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I KG V  V+DFGAFV     +DGLVHIS+LS + +    + V  GD V V++   D 
Sbjct: 646 GMILKGTVRNVIDFGAFVDIGVHQDGLVHISKLSKKFIKHPLEAVSVGDIVEVRVDSVDL 705

Query: 679 DRGKIKLSM 687
            + +I LSM
Sbjct: 706 KKKRISLSM 714


>gi|256083123|ref|XP_002577799.1| ATP-dependent RNA Helicase [Schistosoma mansoni]
 gi|238663131|emb|CAZ34037.1| ATP-dependent RNA Helicase, putative [Schistosoma mansoni]
          Length = 1569

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DG 645
           D  + K  S          + ++ +   P V  IY+G+V  V+ FGA V   G R   +G
Sbjct: 549 DRTSPKRYSHGSNSPNYENKRLKDLPSEPVVGDIYRGRVTNVLAFGAVVQLDGLRKRWEG 608

Query: 646 LVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           LVHISQL  E RVA   DVV     VWVK++ F    +  LSM+ VDQ TG  +
Sbjct: 609 LVHISQLRQEGRVASVGDVVNRNQKVWVKVISFTGT-RTGLSMREVDQETGTDL 661


>gi|149201246|ref|ZP_01878221.1| 30S ribosomal protein S1 [Roseovarius sp. TM1035]
 gi|149145579|gb|EDM33605.1| 30S ribosomal protein S1 [Roseovarius sp. TM1035]
          Length = 553

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILTIGETVKVQVIKINKDTHRISLGMKQLQEDPW 266



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVAAKYPLESTHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER        K
Sbjct: 350 RNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEGEIDGMVHLSDLSWDERGEDAIQSYK 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K +
Sbjct: 410 KGDMVHAVVSEVDIEKERISLSIKAL 435



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFSEAVGGVKRGSVITVAVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRADQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D + V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKLDVRVTNVDAKTRRLGLSIKAREIAEEKEAV 529


>gi|85706231|ref|ZP_01037326.1| 30S ribosomal protein S1 [Roseovarius sp. 217]
 gi|85669395|gb|EAQ24261.1| 30S ribosomal protein S1 [Roseovarius sp. 217]
          Length = 553

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILTIGETVKVQVIKINKDTHRISLGMKQLQEDPW 266



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVAAKYPLESTHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER        K
Sbjct: 350 RNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEGEIDGMVHLSDLSWDERGEDAIQSYK 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K +
Sbjct: 410 KGDMVHAVVSEVDIEKERISLSIKAL 435



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFSEAVGGVKRGSVITVAVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRADQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D + V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKLDVRVTNVDAKTRRLGLSIKAREIAEEKEAV 529


>gi|118580106|ref|YP_901356.1| RNA-binding S1 domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118502816|gb|ABK99298.1| RNA binding S1 domain protein [Pelobacter propionicus DSM 2379]
          Length = 723

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 12/136 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I P +     G+G   +  I+E+          G    +    AE    R+ IR I D+
Sbjct: 597 RIDP-KRYLSDGVGLPTLNDILEELMKP------GRDPRSQFQTAEF---RDDIRKIEDL 646

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   + +G V  V  FGAFV     +DGLVHIS L+   V    D V+ G  V VK+L 
Sbjct: 647 REG-MVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRVKVLS 705

Query: 677 FDD-RGKIKLSMKVVD 691
            D  R +I LS++  +
Sbjct: 706 ADPKRKRISLSIREAE 721


>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
          Length = 282

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 12/243 (4%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            +  +   R D R    +R+I  + G++ +  GS+    G+T+ I  V    RE    + 
Sbjct: 29  EMQRNVSKRHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSV-FDPRE----IP 83

Query: 365 SLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           + +G   + +    + F   +     ++      E  +  + +RA+ P +       + +
Sbjct: 84  NKTGFCMQGELFCEFKFASFS-HRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQV 142

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            + + + ++ GS+  A +  +SLAL +AGVP+   V    +G+         L D +  E
Sbjct: 143 DVYATVLDNGGSALAAAIMAASLALANAGVPMFGLVTASTIGIC----KGTYLVDPTDIE 198

Query: 484 DHLGHMDFKV-AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ++            D GI       + G ISE  ++ ++          L   +      
Sbjct: 199 ENFCSTKAASDTTNDHGIIVQAALPQHGQISEMFVIGSINMDTMEYSMDLLSKAHKDICP 258

Query: 543 RLQ 545
            L+
Sbjct: 259 LLE 261



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + L+TG ++ Q+ G+     G T V+ +V   R + +   F       Q   +   K 
Sbjct: 47  RNIFLKTGIVS-QAKGSAYIEMGNTKVICSVFDPREIPNKTGFC-----MQGELFCEFKF 100

Query: 74  PG-GYLRRESRPTE-NEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVV 129
               + +R+    +  E   S ++ R++ P     +    +  V   V+  D   S    
Sbjct: 101 ASFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVL--DNGGSALAA 158

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           +++AAS AL  +G+P  G V  + +    G Y+++P   E+ 
Sbjct: 159 AIMAASLALANAGVPMFGLVTASTIGICKGTYLVDPTDIEEN 200


>gi|256262203|ref|ZP_05464735.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|263091899|gb|EEZ16221.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|326411053|gb|ADZ68117.1| RNA-binding S1 domain-containing protein [Brucella melitensis M28]
 gi|326554345|gb|ADZ88984.1| RNA-binding S1 domain-containing protein [Brucella melitensis
           M5-90]
          Length = 713

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 546 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 605

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 606 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 665

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 666 KDGGEAPAP 674


>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton rubrum CBS 118892]
 gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton rubrum CBS 118892]
          Length = 302

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G    E      +G    
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVH-GPA--EGKRSETAGAAGA 71

Query: 373 DFMMHYNFLPCATGEVSRM-----GAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +  N    A  +  +      G   R+         R A  P +        T+ + 
Sbjct: 72  VINVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVH 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 132 VSVLSSDGSLLAACLNACTLALVDAGIPMPGLLCACTVGM 171



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA-VGKIPGGYLRRE 81
           S G+   + G T VL TV      K  +        + V      +A V +         
Sbjct: 37  SSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLAGFANVDRKKKSATGSG 96

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
               +    ++  +  + +P        ++   V ++V+  D   S     + A + AL+
Sbjct: 97  GGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVSVLSSDG--SLLAACLNACTLALV 154

Query: 140 LSGLPFEGPVVGAQVDY 156
            +G+P  G +    V  
Sbjct: 155 DAGIPMPGLLCACTVGM 171


>gi|322381802|ref|ZP_08055756.1| 30S ribosomal protein S1-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154190|gb|EFX46512.1| 30S ribosomal protein S1-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 411

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G V ++  FGAFV      +GLVHISQ++   +    +V+KEG  V VK+LD +
Sbjct: 290 IGDIVDGTVKRLASFGAFVEITPGVEGLVHISQIAHRHIGTPQEVLKEGQEVKVKILDIN 349

Query: 679 -DRGKIKLSMKVVDQNT 694
               +I LS+K  ++  
Sbjct: 350 AAEKRISLSIKETEEAP 366



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    + +     G+ +R  V++    ++ + +  +      L E   A++  + I +  
Sbjct: 150 VERQFVEDFSDYKGRTLRMRVKE----LDREKNKVILSQKDVLDEEYEAKK--KEILNSI 203

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++++G V ++  FGAFV   G  DGLVHIS+++   V   S+VVKEGD V VK+L  
Sbjct: 204 EVGQVFEGTVQRLTQFGAFVDI-GGLDGLVHISEMAWHHVDHPSEVVKEGDKVKVKVLKV 262

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +  K+ LS+K  +Q   
Sbjct: 263 DPEHDKVSLSIKATEQGPW 281



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            A ++    + A+E +  +  + +   I KG++VKV    AFV      DG++ + +LS+
Sbjct: 9   EAQAAQDAGQEAQEAMSQVATLKKG-DIVKGKIVKVEQDQAFVDIGYKYDGIIPVRELSS 67

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
            +V      V+ G  V  K++  DD + K+ LS + VD
Sbjct: 68  VQVDTADKAVEVGQEVEAKVVTIDDNKEKLVLSKRAVD 105


>gi|307571520|emb|CAR84699.1| rpsA [Listeria monocytogenes L99]
          Length = 401

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 282 PWDGIAEKAPVGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQ 341

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           TV VK+L+ ++   ++ LS+K +     + 
Sbjct: 342 TVEVKVLEVNEADKRLSLSIKELKDAPVEE 371



 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 178 ENNRVILSHRAVVETEKASQKQALLSEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 235

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   + ++EG  V VK++  D    +I LS+K       
Sbjct: 236 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIKATLPGPW 283



 Score = 44.1 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 34  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 93

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 94  VEDDVLV-LSKRKVDAE 109


>gi|254488080|ref|ZP_05101285.1| ribosomal protein S1 [Roseobacter sp. GAI101]
 gi|214044949|gb|EEB85587.1| ribosomal protein S1 [Roseobacter sp. GAI101]
          Length = 553

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 95/254 (37%), Gaps = 23/254 (9%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG--- 511
           +   V  I  G       + +   +   E        KVA  D     ++      G   
Sbjct: 23  VKGKVIAIEAGQAIIDVGYKMEGRVELKEFAEPGEAPKVAVGDEVEVFLRQVENSRGEAV 82

Query: 512 ISENI---------MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ 562
           IS  +         +  A    +R    I   +    +        F P  ++   P   
Sbjct: 83  ISREMARREEAWDRLEKAYAAEERVEGAIFGRVKGGFTVDLGGAVAFLPGSQVDVRPVRD 142

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
              ++G+        +++          G + ++  ++ E   A +    I ++ E  ++
Sbjct: 143 AGPLMGLKQPFQVLKMDRRR--------GNIVVSRRAILEESRAEQRAEVIGNLTEGQEV 194

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  + ++GAFV   G  DGL+H++ ++  RV   S+++  G+T+ V+++  + +  
Sbjct: 195 -DGVVKNITEYGAFVDL-GGVDGLLHVTDMAWRRVNHPSEILTIGETIKVQVIKINKETH 252

Query: 682 KIKLSMKVVDQNTG 695
           +I L MK + ++  
Sbjct: 253 RISLGMKQLQEDPW 266



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVAAKYPLESSHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 354



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG FV   G  DG+VH+S LS  ER        +
Sbjct: 350 RNPWEVFAETHPEGTEVEGEVKNITEFGLFVGLPGDIDGMVHLSDLSWDERGEDAIQNYR 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K V
Sbjct: 410 KGDIVQAVVSEVDVEKERISLSIKGV 435



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSVVTVTVTSIEDGGIEVEYEGMK-AFIRRSDLSRDRAEQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ +S+K  +    K  V
Sbjct: 497 DKVDVRITNVDTKAHRLGVSIKAREIAEEKEAV 529


>gi|56695704|ref|YP_166055.1| 30S ribosomal protein S1 [Ruegeria pomeroyi DSS-3]
 gi|56677441|gb|AAV94107.1| ribosomal protein S1 [Ruegeria pomeroyi DSS-3]
          Length = 558

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEESRAEQRAEVIGNLTEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   ++++  G+TV V+++  + D  +I L MK + ++  
Sbjct: 226 DMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISLGMKQLQEDPW 271



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 269 DPWDLVGAKYPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 328

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 329 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 359



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +      + +G+V  + +FG F+   G  DG+VH+S LS  ER        +
Sbjct: 355 RNPWEVFAETHPEGTVVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERGEDAIQNYR 414

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D D+ +I LS+K V
Sbjct: 415 KGDMVKAVVSEVDIDKERISLSIKSV 440



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 443 DKFAEAVGGVKRGSIITVNVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRADQRPERFSVG 501

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 502 DKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 534


>gi|86136032|ref|ZP_01054611.1| ribosomal protein S1 [Roseobacter sp. MED193]
 gi|85826906|gb|EAQ47102.1| ribosomal protein S1 [Roseobacter sp. MED193]
          Length = 552

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGKLSEGDSV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILAIGETVKVQVIKINKDTHRISLGMKQLQEDPW 266



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVDVMVLEIDGSKRRVSLGLKQTQRNPWE 354



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 92/250 (36%), Gaps = 34/250 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I A+   +K+  I          
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILAIGETVKVQVI---------- 245

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++  +    +G   P   +       I +      +  G + +  +
Sbjct: 246 KINKDTHRISLGMKQLQEDPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHV 305

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +                  R      ++       
Sbjct: 306 SEMSWTKKNVHPGKIVSTSQEVDVMVLEIDGSKRRVSLGLKQTQRNPWEVFSESNPEGTE 365

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + +FG F+   G  DG+VH+S LS  ER        ++GD V   + + D ++
Sbjct: 366 VEGEVKNITEFGLFIGLEGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVSAVVSEVDVEK 425

Query: 681 GKIKLSMKVV 690
            +I LS+K +
Sbjct: 426 ERISLSIKAL 435



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + + G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSIVTVNVTAIEEGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFNVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 529


>gi|320161941|ref|YP_004175166.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1]
 gi|319995795|dbj|BAJ64566.1| hypothetical protein ANT_25400 [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   + KG VV++  FGAFV     R GL+HIS+++   V + S+VVKEGD + V
Sbjct: 95  EWRDLKKGMVVKGTVVRLEKFGAFVEIGAERPGLLHISEMAHGYVREPSEVVKEGDEIEV 154

Query: 673 KLLDFDDRGK-IKLSMKVVDQNTGKP 697
           +++DF+ + + IKLS K +     K 
Sbjct: 155 EVIDFNRKKRQIKLSRKALLPEPVKE 180



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ---LSTERVAKTSDVVKEGDTVWVKL 674
           +  + ++ +V+K+   GA V     +   +HISQ   L  E + + SDV++EG  + V +
Sbjct: 17  QPKQHFRAKVLKISLAGAAVDLGIGQPAFLHISQIQPLDDEPIKRVSDVLQEGQEIDVWV 76

Query: 675 LDFDDRGKI 683
               + G+I
Sbjct: 77  KRVKE-GRI 84


>gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121]
          Length = 392

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ I+  VE+      +D +    I S    E         S+ D  
Sbjct: 138 ISTDFIEDFSDFEGQTIKIKVEE------LDPENNRVILSRKAVEQAENEVKKASLLDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               + +G V ++ +FGAFV   G  DGLVH+S+LS + V    +VV  GD V VK+   
Sbjct: 192 NAGDVIEGTVARLTNFGAFVDI-GGVDGLVHVSELSHQHVQSPEEVVSVGDKVNVKVKSV 250

Query: 678 D-DRGKIKLSMKVVDQNT 694
           + D  +I LS+K      
Sbjct: 251 EKDTERISLSIKDTLPTP 268



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS++  + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDE 338

Query: 680 RG-KIKLSMKVVDQNT 694
              ++ LS+K    N 
Sbjct: 339 ENERVSLSIKATLPNE 354



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------------VEQTGAKVNIDDDGT 592
           ++ +   +  ++ I   +   +I +       I            +E    K+  D++  
Sbjct: 22  EVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAYVTKIEFDEEND 81

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                 S  ++    +    + +  + N++ + +V +V+  G  V     + G V  S +
Sbjct: 82  SGAYILSKRQL-ETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--GQRGFVPASLI 138

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           ST+ +   SD   EG T+ +K+ + D +  ++ LS K V+Q   +
Sbjct: 139 STDFIEDFSDF--EGQTIKIKVEELDPENNRVILSRKAVEQAENE 181



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  + K ++VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD +   +        +D G   LS + ++
Sbjct: 64  GDEIEAYVTKIEFDEENDSGAYILSKRQLE 93


>gi|301167058|emb|CBW26637.1| putative transcriptional accessory protein [Bacteriovorax marinus
           SJ]
          Length = 769

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S     +V++ Y G V  +  FGAFV      +GL+H+SQ++ + V    D +K G 
Sbjct: 643 KDISKIGDLKVDEWYPGIVTNITQFGAFVDIGIKENGLLHVSQIADKFVENALDELKVGQ 702

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            + V++ D D DRG+I LS K  D N 
Sbjct: 703 ELKVRVKDVDLDRGRISLSCKQDDGNA 729


>gi|315924789|ref|ZP_07921006.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621688|gb|EFV01652.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 728

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  +  +     + ++  V+DFGAF       +GL+HIS++S  RV   +  +  G
Sbjct: 567 KPWDTFVEQYKEGDEVEVKITNVLDFGAFAEIIPGVEGLIHISEISYRRVESVASELTPG 626

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           DTV VK++  + ++ KI LS+K   +   +P
Sbjct: 627 DTVKVKIIGINREKEKISLSIKATLEAPERP 657



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V +        +  RE          ++ + KG V  + +FG F+      DG VH S 
Sbjct: 466 RVILEKEYKERQKVQREQKEKRYAEINLDDVLKGTVKTITNFGIFIDL-DGIDGFVHRSD 524

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           L+  R  +  D++++G  +  K++   D+  KIKLS+K +     
Sbjct: 525 LTWARANEPKDLLEKGQEIEAKVIQKNDEEKKIKLSVKALQPKPW 569



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL---AEIEAAREMIRSITDVPEVNKIY 623
           I  G      IV++   ++  +    +++  ++       + A  +  S   +   + + 
Sbjct: 258 ITAGASTPDWIVKEVTERMEENKTENMQVQETAEMTDEAFDFAAAIDESFKPIHRGSAV- 316

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGK 682
           +G+V++V D    ++     DG++  +  + +     +D VK GD +   + D  DD G 
Sbjct: 317 EGEVIEVNDDEIILNIGYKADGVIKRNDYTWKNDVALTDEVKAGDKINAIVTDLHDDNGA 376

Query: 683 IKLS-MKVVDQNTGK 696
           ++LS +K  +Q T +
Sbjct: 377 VRLSKIKFDNQKTQR 391


>gi|256043771|ref|ZP_05446693.1| transcription accessory protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260564956|ref|ZP_05835441.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|265990197|ref|ZP_06102754.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260152599|gb|EEW87692.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|263000866|gb|EEZ13556.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 713

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 546 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 605

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 606 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 665

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 666 KDGGEAPAP 674


>gi|254690775|ref|ZP_05154029.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 6
           str. 870]
 gi|256255959|ref|ZP_05461495.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
           str. C68]
 gi|260756348|ref|ZP_05868696.1| transcriptional accessory protein [Brucella abortus bv. 6 str. 870]
 gi|260882173|ref|ZP_05893787.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
           str. C68]
 gi|260676456|gb|EEX63277.1| transcriptional accessory protein [Brucella abortus bv. 6 str. 870]
 gi|260871701|gb|EEX78770.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
           str. C68]
          Length = 713

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 546 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 605

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 606 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 665

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 666 KDGGEAPAP 674


>gi|88657606|ref|YP_507222.1| 30S ribosomal protein S1 [Ehrlichia chaffeensis str. Arkansas]
 gi|88599063|gb|ABD44532.1| putative ribosomal protein S1 [Ehrlichia chaffeensis str. Arkansas]
          Length = 567

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 15/191 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A ++ +     I + +    +     +  F P      +   Q++++  + GK 
Sbjct: 134 WQKLEEAAEKKEDVEGVIFSSIKCGYTVDIKGVVAFLPASH---VALRQVKDITPLLGKK 190

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
            +  + +   K      G + ++  ++ E   A      ++ + E   I +G+V  +  +
Sbjct: 191 QKFRILKMDKK-----QGNIVVSRKAILEESLADAKSLYLSQLNEG-DIIEGKVKSITKY 244

Query: 634 GAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++  D +  KI L +
Sbjct: 245 GVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIKIDRENKKISLGV 304

Query: 688 KVVDQNTGKPI 698
           K ++++    I
Sbjct: 305 KQLEESPWSNI 315



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              +I     V+ I+KG V  + ++G FV      +GLVH+S++S  + +   + +   G
Sbjct: 311 PWSNIEKKYPVDSIHKGIVTSIEEYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRG 370

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + + VK+L  D  + ++ LSMK    N  +
Sbjct: 371 EEIQVKVLSIDTAKSRMSLSMKRCQDNPWQ 400



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
             ++ T    +  I   ++  + + G FV           +GL+  ++LS          
Sbjct: 398 PWQAFTLKYPLGSIVSTKIKNITNLGIFVSFQDNTLNDGIEGLIRTTELSWS--LSPEAA 455

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +K    GD+V  K+L  + ++ KI L +K ++ + 
Sbjct: 456 IKKYNVGDSVEAKILMINPNKSKIDLGVKQLEYDP 490


>gi|332527561|ref|ZP_08403608.1| 30S ribosomal protein S1 [Rubrivivax benzoatilyticus JA2]
 gi|332111964|gb|EGJ11941.1| 30S ribosomal protein S1 [Rubrivivax benzoatilyticus JA2]
          Length = 571

 Score = 85.7 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 8/134 (5%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           ++++    GK +   V +   K N      V ++  ++ E     E  + +  + E   I
Sbjct: 152 VKDMSPFEGKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLLETLTEGA-I 205

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L FD ++ 
Sbjct: 206 VHGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQVGQELSAKVLKFDAEKN 264

Query: 682 KIKLSMKVVDQNTG 695
           ++ L +K +  +  
Sbjct: 265 RVSLGIKQLGDDPW 278



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + D+GAFV      +GLVH+S++    +    S VV  G+ V V +L+ D D+ +
Sbjct: 293 GKITNIADYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKVVSLGEEVEVMVLEIDEDKRR 352

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 353 ISLGMKQCKPNPWEE 367



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S T + +   I  G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 450 DPFTSFTTLNDRGAIVTGKVKTVDPRGAEIQLNDDVTGYLRASEISRDRVEDARNVLKEG 509

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V V +++ D + + I+LS+K  D
Sbjct: 510 DEVSVMIINVDRKLRSIQLSIKAKD 534



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +               +     KG V  + DFG FV      D
Sbjct: 344 LEIDEDKRRISLGMKQCKPN----PWEEFASNVKRGDKVKGPVKSITDFGVFVGLSAGID 399

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     + +    K+G  V   +L  D +R +I L +K +D + 
Sbjct: 400 GLVHLSDLSWHEPGEAAVRNYKKGQEVEAIVLAVDVERERISLGIKQLDVDP 451


>gi|258541164|ref|YP_003186597.1| 30S ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256632242|dbj|BAH98217.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01]
 gi|256635299|dbj|BAI01268.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-03]
 gi|256638354|dbj|BAI04316.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-07]
 gi|256641408|dbj|BAI07363.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-22]
 gi|256644463|dbj|BAI10411.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-26]
 gi|256647518|dbj|BAI13459.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-32]
 gi|256650571|dbj|BAI16505.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653562|dbj|BAI19489.1| SSU ribosomal protein S1 [Acetobacter pasteurianus IFO 3283-12]
          Length = 572

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +   R    I   +    +        F P  ++   P   +  ++G+       
Sbjct: 110 LEKAFEANHRVNGTIYGRVKGGFTVDLGGAMAFLPGSQVDIRPVRDVSPLMGVPQPFQIL 169

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +++          G + ++  ++ E   A +    I  + E   I  G V  + D+GAF
Sbjct: 170 KMDRAR--------GNIVVSRRAVLEETRAEQRSELIQGLTEG-MILDGVVKNITDYGAF 220

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+H++ ++ +R+   S+ ++ G  V V+++ F+ +  +I L MK ++ +  
Sbjct: 221 VDL-GGVDGLLHVTDIAWKRINHPSEALQIGQPVRVQVIRFNPETQRISLGMKQLEADPW 279

Query: 696 KPIV 699
           + + 
Sbjct: 280 ENVA 283



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++         + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 277 DPWENVALKYPPGARFTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 336

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K V +N  +
Sbjct: 337 SQEVDVMVLDVDSAKRRISLGLKQVQRNPWE 367



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVV 664
            R       +  +V    +G++  + +FG F+      DG+VH+S LS +    +     
Sbjct: 362 QRNPWEQFAEEHKVGSTVEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDEPGEEAMKHY 421

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           ++G  V  K+LD D ++ +I L +K + ++    
Sbjct: 422 EKGQVVKAKVLDVDVEKERISLGIKQLQEDPAAD 455



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I    V  V   G  V       G +  ++L+ ++  +  +    G+ V  K++ 
Sbjct: 460 VQKGSIVTCTVTAVQTNGIEVKVDDVLTGFIRRAELARDKAEQRPERFAVGERVDAKIIS 519

Query: 677 FDD-RGKIKLSMK--VVDQN 693
            D    K+ L++K   V+++
Sbjct: 520 VDRAARKLALTIKGREVEED 539


>gi|254695919|ref|ZP_05157747.1| hypothetical protein Babob3T_15092 [Brucella abortus bv. 3 str.
           Tulya]
 gi|261216346|ref|ZP_05930627.1| RNA binding protein [Brucella abortus bv. 3 str. Tulya]
 gi|260917953|gb|EEX84814.1| RNA binding protein [Brucella abortus bv. 3 str. Tulya]
          Length = 713

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 546 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 605

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 606 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 665

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 666 KDGGEAPAP 674


>gi|15806757|ref|NP_295477.1| hypothetical protein DR_1754 [Deinococcus radiodurans R1]
 gi|6459529|gb|AAF11311.1|AE002017_2 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 133

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 49/80 (61%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M R +    +   + +G++ +V DFGAFV F     GLVHISQ++   V    D V+EG+
Sbjct: 1   MRRKLLVQLDSGAVAEGRITRVTDFGAFVQFENGETGLVHISQIAHSFVRNIHDHVREGE 60

Query: 669 TVWVKLLDFDDRGKIKLSMK 688
            V VK+L  D+RG++ LS+K
Sbjct: 61  NVEVKVLGRDERGRLDLSIK 80


>gi|161620957|ref|YP_001594843.1| RNA-binding S1 domain-containing protein [Brucella canis ATCC
           23365]
 gi|254703225|ref|ZP_05165053.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|260567843|ref|ZP_05838312.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 4 str.
           40]
 gi|261753854|ref|ZP_05997563.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
           686]
 gi|161337768|gb|ABX64072.1| RNA binding S1 domain protein [Brucella canis ATCC 23365]
 gi|260154508|gb|EEW89589.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 4 str.
           40]
 gi|261743607|gb|EEY31533.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
           686]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|158520180|ref|YP_001528050.1| RNA-binding S1 domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158509006|gb|ABW65973.1| RNA binding S1 domain protein [Desulfococcus oleovorans Hxd3]
          Length = 759

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D+          A    +     +  D  +      G V  +  FGAFV     +DG
Sbjct: 601 DILDELAKPGRDPRQAFESVSFIEGINTIDDVQPGMKLPGIVTNITAFGAFVDIGVHQDG 660

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           LVHISQ++   V   +D+VK    V V +L+ D +R +I LSMK 
Sbjct: 661 LVHISQMADRFVKSPADIVKVQQRVMVTVLEVDKERKRISLSMKA 705


>gi|23500631|ref|NP_700071.1| tex protein [Brucella suis 1330]
 gi|23464273|gb|AAN34076.1| tex protein, putative [Brucella suis 1330]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|295397064|ref|ZP_06807176.1| YhgF like protein [Aerococcus viridans ATCC 11563]
 gi|294974656|gb|EFG50371.1| YhgF like protein [Aerococcus viridans ATCC 11563]
          Length = 715

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 31/241 (12%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG------ITAMQMDMK 508
           +   VAG++M + K+  ++   + +  D   LG +      T         IT     + 
Sbjct: 494 LLSHVAGLSMAVAKNVVEYRNENGVFTDRKQLGKVKRLGPKTYEQAVGFIRITGGDNILD 553

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
             GI             +    IL ++   L     +L     R  I     D +    G
Sbjct: 554 NTGIHPE--------NYKEVKAILKDLGVSL----EELQSEEARKTIANFDLDALSEAYG 601

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQV 627
           +G + +  I               +        ++ A       ++    +V    +G V
Sbjct: 602 IGKETLVDIQ-----------KSLLTPGRDPREDVAAPILRSDVLSLKDLKVGMKLQGTV 650

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
             V+DFGAFV     +DGLVHIS++ST+ V+  SD V  GD V V + + D+ +G+I LS
Sbjct: 651 RNVVDFGAFVDVGVKQDGLVHISRMSTKFVSNPSDFVSVGDIVEVWVSEVDEKKGRIGLS 710

Query: 687 M 687
           M
Sbjct: 711 M 711


>gi|225629363|ref|ZP_03787396.1| RNA-binding S1 domain-containing protein [Brucella ceti str. Cudo]
 gi|256157438|ref|ZP_05455356.1| hypothetical protein BcetM4_01081 [Brucella ceti M490/95/1]
 gi|256253584|ref|ZP_05459120.1| hypothetical protein BcetB_04659 [Brucella ceti B1/94]
 gi|260167665|ref|ZP_05754476.1| hypothetical protein BruF5_04624 [Brucella sp. F5/99]
 gi|261220719|ref|ZP_05935000.1| RNA-binding S1 domain-containing protein [Brucella ceti B1/94]
 gi|261757097|ref|ZP_06000806.1| RNA-binding S1 domain-containing protein [Brucella sp. F5/99]
 gi|265995930|ref|ZP_06108487.1| RNA-binding S1 domain-containing protein [Brucella ceti M490/95/1]
 gi|225615859|gb|EEH12908.1| RNA-binding S1 domain-containing protein [Brucella ceti str. Cudo]
 gi|260919303|gb|EEX85956.1| RNA-binding S1 domain-containing protein [Brucella ceti B1/94]
 gi|261737081|gb|EEY25077.1| RNA-binding S1 domain-containing protein [Brucella sp. F5/99]
 gi|262550227|gb|EEZ06388.1| RNA-binding S1 domain-containing protein [Brucella ceti M490/95/1]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|198426278|ref|XP_002127628.1| PREDICTED: similar to ATP-dependent RNA helicase DHX8 (DEAH box
           protein 8) (RNA helicase HRH1) [Ciona intestinalis]
          Length = 1185

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQL-STERVAKTSDVVK 665
            R I + P    I++G+V  +M FG FV   G R   +GLVHIS+L +  RV++ SDVVK
Sbjct: 223 RRQIPEEPTPGDIFEGRVTSIMQFGCFVQLEGLRKRIEGLVHISELRAEGRVSQVSDVVK 282

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G    VK++ F    K  L+MK VDQ TG+ +
Sbjct: 283 RGQKCKVKVISFTGT-KTSLTMKDVDQITGEDL 314


>gi|254712666|ref|ZP_05174477.1| hypothetical protein BcetM6_04696 [Brucella ceti M644/93/1]
 gi|254715736|ref|ZP_05177547.1| hypothetical protein BcetM_04704 [Brucella ceti M13/05/1]
 gi|261217494|ref|ZP_05931775.1| RNA-binding S1 domain-containing protein [Brucella ceti M13/05/1]
 gi|261320369|ref|ZP_05959566.1| RNA-binding S1 domain-containing protein [Brucella ceti M644/93/1]
 gi|260922583|gb|EEX89151.1| RNA-binding S1 domain-containing protein [Brucella ceti M13/05/1]
 gi|261293059|gb|EEX96555.1| RNA-binding S1 domain-containing protein [Brucella ceti M644/93/1]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|259047480|ref|ZP_05737881.1| histidine triad domain-containing protein [Granulicatella adiacens
           ATCC 49175]
 gi|259035671|gb|EEW36926.1| histidine triad domain-containing protein [Granulicatella adiacens
           ATCC 49175]
          Length = 751

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 569 MGGKVIRGIVEQTG---AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--- 622
           + G   + + E+ G     + +  DG +K       E+  A  ++RS     E  ++   
Sbjct: 620 LKGLNTKELKEEFGIGQETLELVMDGLLKPGRDPREEV--AGPILRSDVLKMEDLQVGME 677

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+L    V   SDVV  GD V V + + D  +G
Sbjct: 678 LEGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVTELDLKKG 737

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 738 RVGLSM 743


>gi|256015665|ref|YP_003105674.1| RNA-binding S1 domain-containing protein [Brucella microti CCM
           4915]
 gi|255998325|gb|ACU50012.1| RNA-binding S1 domain-containing protein [Brucella microti CCM
           4915]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|145594251|ref|YP_001158548.1| RNA-binding S1 domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145303588|gb|ABP54170.1| RNA binding S1 domain protein [Salinispora tropica CNB-440]
          Length = 803

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V V++LD D  R
Sbjct: 655 ILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSRTFVRDPHEVVKSGDVVKVRVLDVDVPR 714

Query: 681 GKIKLSMKVVD 691
            +I L++++ D
Sbjct: 715 KRISLTLRLDD 725


>gi|81429179|ref|YP_396180.1| putative transcription accessory protein, RNA-binding
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610822|emb|CAI55873.1| Putative transcription accessory protein, RNA-binding
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 725

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + N   +G V  V+DFGAFV      DGLVHISQL+   V   SD V  GD V V +L  
Sbjct: 648 KPNMALEGTVRNVIDFGAFVDIGVKHDGLVHISQLANHFVKHPSDEVSVGDVVQVWVLSV 707

Query: 678 D-DRGKIKLSMKV 689
           D +R +++L+MK 
Sbjct: 708 DQERERVQLTMKA 720


>gi|315303890|ref|ZP_07874364.1| 30S ribosomal protein S1 [Listeria ivanovii FSL F6-596]
 gi|313627740|gb|EFR96399.1| 30S ribosomal protein S1 [Listeria ivanovii FSL F6-596]
          Length = 381

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +V+    + T   + ID +      S               I +   V  + +G+VV+++
Sbjct: 229 EVLEEGQKVTVKVIGIDPENERISLSIKANLPG----PWDGIAEKAPVGSVLEGKVVRLV 284

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
            FGAFV      +GLVHISQ+S + +    +V+ EG+T+ VK+L+ ++   ++ LS+K +
Sbjct: 285 TFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGETIEVKVLEVNETDKRLSLSIKDL 344

Query: 691 DQNT 694
               
Sbjct: 345 QDAP 348



 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVENEKASQKQALLNEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   +V++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYQHIATPQEVLEEGQKVTVKVIGIDPENERISLSIKANLPGPW 263



 Score = 44.1 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDVLV-LSKRKVDAE 89


>gi|313212412|emb|CBY36394.1| unnamed protein product [Oikopleura dioica]
          Length = 1041

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVK 665
               +   P+V KIY G+V  +  FG F+   G     +GL HIS+L +ERV + SDVV 
Sbjct: 220 KREQLEKDPQVGKIYNGKVTSLKHFGCFITVEGLLKPIEGLCHISELRSERVNEVSDVVA 279

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
               V VK+L F    +  LSMK VDQ TG+ +
Sbjct: 280 RFQQVKVKVLSFSGT-RTSLSMKDVDQATGEDL 311


>gi|319762547|ref|YP_004126484.1| ribosomal protein s1 [Alicycliphilus denitrificans BC]
 gi|330824564|ref|YP_004387867.1| 50S ribosomal protein S1 [Alicycliphilus denitrificans K601]
 gi|317117108|gb|ADU99596.1| ribosomal protein S1 [Alicycliphilus denitrificans BC]
 gi|329309936|gb|AEB84351.1| ribosomal protein S1 [Alicycliphilus denitrificans K601]
          Length = 561

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    ++++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPVKDLTPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L F
Sbjct: 191 EGA-IVNGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    ++          G+V  + D+GAFV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWMGVSRRYPSGTRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPNKLVSL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCRANPWQE 356



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D                    +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCRAN----PWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS            K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDP 440



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFVTVNDKGQTVSGKVKTVDARGAEIDLGNDIVGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D V   +++ D + + I+LS+K  DQ
Sbjct: 499 DEVTAVVVNVDRKTRNIQLSIKAKDQ 524


>gi|210615499|ref|ZP_03290626.1| hypothetical protein CLONEX_02842 [Clostridium nexile DSM 1787]
 gi|210150348|gb|EEA81357.1| hypothetical protein CLONEX_02842 [Clostridium nexile DSM 1787]
          Length = 726

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 14/133 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEV 619
            ++   +G+G   +R IV++             K       E+                 
Sbjct: 605 KKLAEELGIGEITLRDIVKELE-----------KPGRDPRDEMPKPILRTDVLEMKDLTE 653

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
             I KG V  V+DFG FV     +DGLVHISQ+   + +    +VV  GD V VK++  D
Sbjct: 654 GMILKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKHPLEVVSVGDIVDVKVMSVD 713

Query: 679 -DRGKIKLSMKVV 690
             + +I+L+MK +
Sbjct: 714 VKKKRIQLTMKGI 726


>gi|221068235|ref|ZP_03544340.1| ribosomal protein S1 [Comamonas testosteroni KF-1]
 gi|264677562|ref|YP_003277468.1| ribosomal protein S1 [Comamonas testosteroni CNB-2]
 gi|299532470|ref|ZP_07045861.1| 30S ribosomal protein S1 [Comamonas testosteroni S44]
 gi|220713258|gb|EED68626.1| ribosomal protein S1 [Comamonas testosteroni KF-1]
 gi|262208074|gb|ACY32172.1| ribosomal protein S1 [Comamonas testosteroni CNB-2]
 gi|298719555|gb|EFI60521.1| 30S ribosomal protein S1 [Comamonas testosteroni S44]
          Length = 560

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTLEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L F
Sbjct: 191 EGA-IVQGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G+V  + D+GAFV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWMGVARRYPSATRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPTKLVSL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCKANPWQE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 34/258 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  ++    D+ G +   H+  M ++     S +     +     I+  I+ 
Sbjct: 193 AIVQGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVTAGQE-----ITAKILK 247

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P    +      I +      +  G + 
Sbjct: 248 FDTEKNRVS-----LGLKQMGDDPWMGVARRYPSATRLFGKVTNIADYGAFVELEPGIEG 302

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      NI     V +       +    E                 +      +
Sbjct: 303 LVHVSEMDWTNKNIAPTKLVSLGDEVEVMVLEIDEDKRRISLGMKQCKANPWQEFAQNTK 362

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDF 677
                KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  
Sbjct: 363 RGDRVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEAGEAAVRNYKKGQEVEAIVLAV 422

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R +I L +K +D + 
Sbjct: 423 DVERERISLGIKQLDSDP 440



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  ++  G+V  V   GA +       G +  S++S +RV     V+KEG
Sbjct: 439 DPFTTFVTVNDKGQVVTGKVKTVDAKGAEIDLGEDIIGYLRASEISQDRVEDARSVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAVVVNVDRKSRNIQLSIKQKD 523


>gi|238926860|ref|ZP_04658620.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531]
 gi|238885392|gb|EEQ49030.1| possible 30S ribosomal protein S1 [Selenomonas flueggei ATCC 43531]
          Length = 370

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   VE    ++++     V      L    A +E        PE  +I +G V +++D+
Sbjct: 145 VDQTVEAEIIEIDVQKRRLVLSRRKLLERDRAEKEEAVFSAIEPE--QIVRGTVKRLVDY 202

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL HIS L+  RV   S+V++ G  + V +   D D  +I LS+K    
Sbjct: 203 GAFIDI-GGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSVDRDTKRISLSVKDTLP 261

Query: 693 NTG 695
           +  
Sbjct: 262 DPW 264



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +        +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  G
Sbjct: 262 DPWIEKAEKYAEGDFIEGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTG 321

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           D V VK+L  D  R +I LS+
Sbjct: 322 DIVIVKVLRIDTKRKRISLSI 342


>gi|291294513|ref|YP_003505911.1| RNA binding S1 domain-containing protein [Meiothermus ruber DSM
           1279]
 gi|290469472|gb|ADD26891.1| RNA binding S1 domain protein [Meiothermus ruber DSM 1279]
          Length = 558

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           G++++   E     + ID +           +     +  +S+ D        KG+V  +
Sbjct: 342 GEILKEGQEVEAQVLRIDPEERRLSLGLKQTQP----DPWKSLPDRYPPGTPVKGKVTGL 397

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
            DFG FV      +GL+H+S+L+ ERV K S++ K+GD V   +L  D    +I LS K 
Sbjct: 398 TDFGVFVEIEPGIEGLIHVSELAYERVEKPSEIFKKGDEVEAAILQIDPVEQRISLSRKR 457

Query: 690 VDQNTG 695
           +     
Sbjct: 458 LLPPPA 463



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            DFG FV   G  DGLVH S+++  R     DVV++G TV  K+L  D +R ++ LSMK 
Sbjct: 226 TDFGVFVAL-GGVDGLVHRSEITWGRFNHPRDVVQKGQTVKAKVLSVDTERERVNLSMKA 284

Query: 690 VDQNTG 695
           + Q+  
Sbjct: 285 LTQDPW 290



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   ++++   V     G+VV +  FGAFV      +GL+HIS+LS  +R     +++K
Sbjct: 287 QDPWLTVSEKYPVGSRLTGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPGEILK 346

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           EG  V  ++L  D +  ++ L +K    +  K +
Sbjct: 347 EGQEVEAQVLRIDPEERRLSLGLKQTQPDPWKSL 380



 Score = 39.1 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 14/165 (8%)

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
           N+   V   +R +      ++    +  ++++N++  G  V   +V         D +  
Sbjct: 51  NDGVMVDIGARTEAVIPFNQLTEENLSEEELKNLLKPGDTVTAYVVR-------ADLENG 103

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
             + S   AE + +   I+++ +  E   +   + VK    G  V         +  SQ+
Sbjct: 104 QVVLSKKRAEADQSWVKIQALYEQGEPVMVQVKEKVK----GGLVATIEGLRAFLPASQV 159

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             +R     + V  G +  VK+++ +  +G+I LS + V +   K
Sbjct: 160 DLKRTPDLDEYV--GQSFLVKIIELNRKKGRIILSRRTVLEAEQK 202


>gi|217963910|ref|YP_002349588.1| 30S ribosomal protein S1-like protein [Listeria monocytogenes
           HCC23]
 gi|217333180|gb|ACK38974.1| putative 30S ribosomal protein S1-like protein [Listeria
           monocytogenes HCC23]
          Length = 381

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 262 PWDGIAEKAPVGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQ 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           TV VK+L+ ++   ++ LS+K +     + 
Sbjct: 322 TVEVKVLEVNEADKRLSLSIKELKDAPVEE 351



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   + ++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIKATLPGPW 263



 Score = 43.7 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDVLV-LSKRKVDAE 89


>gi|254700105|ref|ZP_05161933.1| hypothetical protein Bsuib55_04484 [Brucella suis bv. 5 str. 513]
 gi|261750596|ref|ZP_05994305.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 5 str.
           513]
 gi|261740349|gb|EEY28275.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 5 str.
           513]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|189500922|ref|YP_001960392.1| 30S ribosomal protein S1 [Chlorobium phaeobacteroides BS1]
 gi|189496363|gb|ACE04911.1| RNA binding S1 domain protein [Chlorobium phaeobacteroides BS1]
          Length = 591

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +R+   + G+ +   V     K+N      V      L E  AA+     +   
Sbjct: 161 QIDVKPVRDFDALVGQTMDFRV----VKINPVTQNIVVSHKVILEEEYAAK--REEMLAN 214

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  I +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV     + V ++ 
Sbjct: 215 IKVGMILEGSVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVA 273

Query: 677 FDDR-GKIKLSMKVVDQNTGKPI 698
           FD+   ++ L MK ++ +  + I
Sbjct: 274 FDENTKRVSLGMKQLESHPWENI 296



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI-------YKGQV 627
            G +      V++D    V + +        +  M +  +   E  +I         G+V
Sbjct: 251 WGRINHPSEVVDLDQPIKVVVVAFDENTKRVSLGMKQLESHPWENIEIKYPVGIKTNGRV 310

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +   S  V  G  V   +L+ D +  K+ L
Sbjct: 311 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPSQFVTLGQEVECVILNVDKEHTKLSL 370

Query: 686 SMKVVDQNTG 695
           SMK V+++  
Sbjct: 371 SMKRVNEDPW 380



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++++    N ++KG V  + DFG FV      DGLVHIS LS  +++   S++VK+
Sbjct: 378 DPWIALSEKYIENSLHKGTVSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKK 437

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              + VK+L FD +  +I L  K ++Q+    
Sbjct: 438 NQDLEVKVLKFDVNARRIALGHKQINQDPWDE 469



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G++ ++++ G  V   G  DG V +S L    V   +   K  D + +++++FD +  +I
Sbjct: 482 GKISQIIEKGVIVILPGDVDGFVPVSHLLQGGVKDINASFKVEDELPLRVIEFDKENKRI 541

Query: 684 KLS 686
            LS
Sbjct: 542 ILS 544


>gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
          Length = 543

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +N+D +      S   A+     +   +I D   VN +  G+V  ++  GAFV      +
Sbjct: 328 INVDKENRKLTLSYRKAKG----DPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVE 383

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           G V +S++S +R+ +  +++K G+ V VK+L  D   + I LS++   +N  +
Sbjct: 384 GFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPWE 436



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            I       +V  I +G V  + + G  V       G +  S+LS +      DVVK G 
Sbjct: 175 KIEEFFSEKKVGDIIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDNRISPEDVVKPGQ 234

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            +  K+++ D+R K + LS+K +  +  + +
Sbjct: 235 NITAKIIELDERKKNVILSLKRLMPDPWEKV 265



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 15/241 (6%)

Query: 461 GIAMGLVKDGDDFIILSD-ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           G+    +      +  +D I   E  +  ++       S I   +  ++   I E     
Sbjct: 124 GVVSAFLPGSHSLLRRNDPIPEKEIEVIILEMVQTKRGSRIVVSRRALQDRKIEEFFSEK 183

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
            +     G +  ++    V  E    +  F P+ E+         +V+  G  +   I+E
Sbjct: 184 KVGDIIEGTVKGISNAG-VEVEISEGIRGFIPKSELSYDNRISPEDVVKPGQNITAKIIE 242

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
                    D+    +  S    +    +    + +   V K+  G+V+ +  FG FV  
Sbjct: 243 L--------DERKKNVILSLKRLMP---DPWEKVKEKYPVGKVVGGEVISIHSFGFFVRL 291

Query: 640 CGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
               +GLV  S++          +VV  GD V V++++ D   + + LS +    +  + 
Sbjct: 292 EPGVEGLVPRSEVFWGNARKNLEEVVSVGDLVKVEVINVDKENRKLTLSYRKAKGDPWEN 351

Query: 698 I 698
           I
Sbjct: 352 I 352


>gi|84515230|ref|ZP_01002592.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
 gi|84510513|gb|EAQ06968.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
          Length = 552

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQEV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLGMKQLQEDPW 266



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +  +++G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDAVEAKFSLGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDSAKRRVSLGLKQTQRNPWE 354



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVV 664
            R       +        +G+V  + +FG F+   G  DG+VH+S L+ + R        
Sbjct: 349 QRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEGDIDGMVHLSDLTWDGRGEDVIGDF 408

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           ++GD V  K+ + D ++ +I LS+K +D + 
Sbjct: 409 RKGDMVKAKVAEVDVEKERISLSIKALDSDP 439



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V K+ D G  V + G +   +  S LS +R  +  +    GD V V++ +
Sbjct: 447 VKRGSIITVEVTKIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFGAGDKVDVRVTN 505

Query: 677 FDDRGK-IKLSMKVVDQNTGKPIV 699
            D + + + LS+K  +    K  V
Sbjct: 506 IDSKTRKLGLSIKAREIAEEKEAV 529


>gi|294853853|ref|ZP_06794525.1| RNA-binding S1 domain-containing protein [Brucella sp. NVSL
           07-0026]
 gi|294819508|gb|EFG36508.1| RNA-binding S1 domain-containing protein [Brucella sp. NVSL
           07-0026]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|288799884|ref|ZP_06405343.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333132|gb|EFC71611.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 713

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G +  + +FG FV      DGLVHISQ++   ++  +DVVK    V VK+++ D
Sbjct: 637 IGMVLPGIITNITNFGVFVDIGVHNDGLVHISQITNRYISSPTDVVKLHQHVQVKVIEVD 696

Query: 679 -DRGKIKLSMKVVDQNT 694
             R +I LSM+ +++N 
Sbjct: 697 LQRKRIALSMR-LNENE 712


>gi|254710861|ref|ZP_05172672.1| hypothetical protein BpinB_11481 [Brucella pinnipedialis B2/94]
 gi|256029244|ref|ZP_05442858.1| hypothetical protein BpinM2_01040 [Brucella pinnipedialis
           M292/94/1]
 gi|256058929|ref|ZP_05449143.1| hypothetical protein Bneo5_01041 [Brucella neotomae 5K33]
 gi|261318435|ref|ZP_05957632.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261322869|ref|ZP_05962066.1| RNA-binding S1 domain-containing protein [Brucella neotomae 5K33]
 gi|265986234|ref|ZP_06098791.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|261297658|gb|EEY01155.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           B2/94]
 gi|261298849|gb|EEY02346.1| RNA-binding S1 domain-containing protein [Brucella neotomae 5K33]
 gi|264658431|gb|EEZ28692.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M292/94/1]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|254705632|ref|ZP_05167460.1| hypothetical protein BpinM_01111 [Brucella pinnipedialis
           M163/99/10]
          Length = 442

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 275 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 334

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 335 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 394

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 395 KDGGEAPAP 403


>gi|163845021|ref|YP_001622676.1| hypothetical protein BSUIS_B0897 [Brucella suis ATCC 23445]
 gi|163675744|gb|ABY39854.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 767

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|17988737|ref|NP_541370.1| transcription accessory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|17984550|gb|AAL53634.1| transcription accessory protein (s1 RNA binding domain) [Brucella
           melitensis bv. 1 str. 16M]
          Length = 703

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 536 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 595

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 596 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 655

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 656 KDGGEAPAP 664


>gi|37523713|ref|NP_927090.1| hypothetical protein glr4144 [Gloeobacter violaceus PCC 7421]
 gi|35214718|dbj|BAC92085.1| glr4144 [Gloeobacter violaceus PCC 7421]
          Length = 722

 Score = 85.7 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
            +G V  V +FGAFV     +DGLVH+SQL+   VA    VVK G  V V++L+ +   G
Sbjct: 648 LEGVVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVADPKAVVKVGQIVRVRVLEVNTALG 707

Query: 682 KIKLSMKVVDQNTGK 696
           +I LSM+       +
Sbjct: 708 RIGLSMRQAGAPPRR 722


>gi|325847830|ref|ZP_08170052.1| S1 RNA binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480848|gb|EGC83901.1| S1 RNA binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 575

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D+             E   +      +  +   I +G V  + +FG FV      DG
Sbjct: 468 DIIDELKKPGRDPRDELPEVITKSEVLSINNLKEGDILEGTVRNITEFGCFVDIGVGIDG 527

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           LVHIS +S + +   +++V   D + VK+++ D  R +I LSMK + +
Sbjct: 528 LVHISNMSDKFIKDPNEIVTNSDIIKVKVIEIDKKRERIGLSMKNIKE 575


>gi|310815216|ref|YP_003963180.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare Y25]
 gi|308753951|gb|ADO41880.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare Y25]
          Length = 561

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLTEG-QVVDGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK +  +  
Sbjct: 227 DMAWRRVNHPSEILSIGETIKVQVIKINKETHRISLGMKQLQDDPW 272



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   S+     +  ++ G+V  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWHSVETKYPLESVHTGRVTNITEYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVEVMVLEIDSSKRRVSLGLKQTQRNPWE 360



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 97/251 (38%), Gaps = 28/251 (11%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I ++   +K+  I    +     
Sbjct: 202 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETIKVQVIK---INKETH 258

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   + ++    +          T RV    I        +  G + +  + E + 
Sbjct: 259 RISLGMKQLQDDPWHSVETKYPLESVHTGRVTN--ITEYGAFVELEPGVEGLVHVSEMSW 316

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      +                  R       +        +G+V
Sbjct: 317 TKKNVHPGKIVSTSQEVEVMVLEIDSSKRRVSLGLKQTQRNPWEVFAETHPEGTNVEGEV 376

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKI 683
             + +FG F+   G  DG+VH+S L+ E   +  DV+   ++GD V  K+L+ D ++ +I
Sbjct: 377 KNITEFGLFIGLSGDIDGMVHLSDLTWE--GRGEDVIGDYRKGDVVKAKVLEVDVEKERI 434

Query: 684 KLSMKVVDQNT 694
            LS+K +D++ 
Sbjct: 435 SLSIKAMDEDP 445



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      D  +   +   +V K+ D G  V + G +   +  S LS +R  +  +    G
Sbjct: 444 DPFADAVDGVKRGSVITVEVTKIEDGGIEVEYEGMK-SFIRRSDLSRDRADQRPERFSVG 502

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V V++ + D + + + LS+K  +    K  V
Sbjct: 503 DKVDVRVTNVDSKTRKLGLSIKAREIAEEKEAV 535


>gi|261313042|ref|ZP_05952239.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|261302068|gb|EEY05565.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
           M163/99/10]
          Length = 441

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 274 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 333

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 334 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 393

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 394 KDGGEAPAP 402


>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
 gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
          Length = 237

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 93/232 (40%), Gaps = 16/232 (6%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M  +  R DGR   ++R + ++ G L +  GS+ F +  ++ +  V  G  E       +
Sbjct: 1   MKTEHTRNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAV-YGPIE-------V 52

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
           +  ++   +  Y  +          G  +  +     L + A+  ++  T      + ++
Sbjct: 53  NSARKEKILKSYVEVTF----TPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVI 108

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            ++   DGS     +  + LAL+DAG+ ++  +  + +    DG  ++   D S +E++ 
Sbjct: 109 LQVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGSIYV---DPSTEEENQ 165

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                 +    S    + +   IG ++E+     L +A      I++ +   
Sbjct: 166 SKA-IAIYSFSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLA 216



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP++ E G + + +DG+   +  ++ VLA V     +   +    L  +Y E T+     
Sbjct: 17  RPVESEQGSLNK-ADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILK-SYVEVTFTPAFG 74

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
              Y+ +E      E+LI   ++  I        + +  VI+ V   D        ++ A
Sbjct: 75  NTNYIDKE-----KELLIKNAVESMILTTL--YPRTQISVILQVFSDDGSIVSC--AINA 125

Query: 134 ASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGS--LDLFVSGTQDAVLMVEL 190
           A  AL+ +G+   G +    + +  +G   ++P  +E+  S  + ++   + +  +++  
Sbjct: 126 ACLALLDAGIEMNGLLGSVTLCFNNDGSIYVDPSTEEENQSKAIAIYSFSSINKNIVLSK 185

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAK 223
               L+ED     +      C  +I  I    K
Sbjct: 186 TIGTLTEDQYFKGLDKASESCDLIISFIKLAVK 218


>gi|329114774|ref|ZP_08243531.1| 30S ribosomal protein S1 [Acetobacter pomorum DM001]
 gi|326695905|gb|EGE47589.1| 30S ribosomal protein S1 [Acetobacter pomorum DM001]
          Length = 572

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +   R    I   +    +        F P  ++   P   +  ++G+       
Sbjct: 110 LEKAFEANHRVNGTIYGRVKGGFTVDLGGAMAFLPGSQVDIRPVRDVSPLMGVPQPFQIL 169

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +++          G + ++  ++ E   A +    I  + E   I  G V  + D+GAF
Sbjct: 170 KMDRAR--------GNIVVSRRAVLEETRAEQRSELIQGLTEG-MILDGVVKNITDYGAF 220

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+H++ ++ +R+   S+ ++ G  V V+++ F+ +  +I L MK ++ +  
Sbjct: 221 VDL-GGVDGLLHVTDIAWKRINHPSEALQIGQPVRVQVIRFNPETQRISLGMKQLEADPW 279

Query: 696 KPIV 699
           + + 
Sbjct: 280 ENVA 283



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++         + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 277 DPWENVALKYPPGARFTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 336

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K V +N  +
Sbjct: 337 SQEVDVMVLDVDSAKRRISLGLKQVQRNPWE 367



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVV 664
            R       +  +V    +G++  + +FG F+      DG+VH+S LS +    +     
Sbjct: 362 QRNPWEQFAEEHKVGSTVEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDEAGEEAMKHY 421

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           ++G  V  K+LD D ++ +I L +K + ++    
Sbjct: 422 EKGQVVKAKVLDVDVEKERISLGIKQLQEDPAAD 455



 Score = 38.4 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I    V  V   G  V       G +  ++L+ ++  +  +    G+ V  K++ 
Sbjct: 460 VQKGSIVTCIVTAVQTNGIEVKVDDVLTGFIRRAELARDKAEQRPERFAVGERVDAKIIS 519

Query: 677 FDD-RGKIKLSMK--VVDQN 693
            D    K+ L++K   V+++
Sbjct: 520 VDRAARKLALTIKGREVEED 539


>gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|258510209|ref|YP_003183643.1| RNA binding S1 domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218239326|gb|EED06524.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|257476935|gb|ACV57254.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 134

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  +  FGAFV       GLVHIS++S + V   +D +K  D V VK+L  
Sbjct: 4   EVGSKVTGKVTGITRFGAFVTLPEGETGLVHISEISDDYVRDVNDYLKVNDEVTVKVLSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
              GKI LS++  ++++
Sbjct: 64  SGDGKIALSIRQANESS 80


>gi|210630872|ref|ZP_03296646.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
 gi|210160306|gb|EEA91277.1| hypothetical protein COLSTE_00531 [Collinsella stercoris DSM 13279]
          Length = 835

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV----PEVNKI 622
           IG     +  I  + G  V    D   ++        + A E++ S         EV   
Sbjct: 703 IGAKIGNLGAIAAELGCGVPTLRDIVAELEKPGRDPRDDAPEVVFSQAARSIEDLEVGME 762

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            KG V  V+DFGAFV     +DGLVHIS+L+   V   S+VV  GDTV V +   D  R 
Sbjct: 763 LKGTVRNVVDFGAFVDIGVHQDGLVHISKLADRFVKHPSEVVAVGDTVTVWVTGVDRTRK 822

Query: 682 KIKLSM 687
           KI L+M
Sbjct: 823 KISLTM 828


>gi|229004370|ref|ZP_04162139.1| 30S ribosomal protein S1 [Bacillus mycoides Rock1-4]
 gi|228756881|gb|EEM06157.1| 30S ribosomal protein S1 [Bacillus mycoides Rock1-4]
          Length = 152

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A      +++   +   I +G V +++ FGAFV      +GLVH+SQ++   V   ++V+
Sbjct: 29  AQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVL 88

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMK-VVDQN 693
           + G  V VK+L+      +I LS+K  V++N
Sbjct: 89  EMGQEVKVKVLEVHAAEKRISLSIKEAVEEN 119



 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           ++ +G +V VK+L  D D  +I LS+K       + +
Sbjct: 1   MLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENV 37


>gi|290892098|ref|ZP_06555094.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-071]
 gi|290558221|gb|EFD91739.1| 30S ribosomal protein S1 [Listeria monocytogenes FSL J2-071]
          Length = 381

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I +   V  + +G+VV+++ FGAFV      +GLVHISQ+S E +    +V+ EG 
Sbjct: 262 PWDGIAEKAPVGSVLEGKVVRLVTFGAFVEIFEGVEGLVHISQISHEHIGTPQEVLSEGQ 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           TV VK+L+ ++   ++ LS+K +     + 
Sbjct: 322 TVEVKVLEVNEVDKRLSLSIKELKDAPVEE 351



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    ++++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLSEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   + ++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIKATLPGPW 263



 Score = 43.7 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDVLV-LSKRKVDAE 89


>gi|241764520|ref|ZP_04762540.1| ribosomal protein S1 [Acidovorax delafieldii 2AN]
 gi|241366056|gb|EER60660.1| ribosomal protein S1 [Acidovorax delafieldii 2AN]
          Length = 561

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L F
Sbjct: 191 EGS-IVQGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G++  + D+GAFV      +GLVH+S++    +    + +V  
Sbjct: 265 DPWMGVNRRYPQGTRLFGKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPAKLVSL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCKANPWQE 356



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAQDTKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     + +    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDP 440



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFVTVNDKGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAVVVNVDRKTRNIQLSIKQKD 523


>gi|119386493|ref|YP_917548.1| 30S ribosomal protein S1 [Paracoccus denitrificans PD1222]
 gi|119377088|gb|ABL71852.1| SSU ribosomal protein S1P [Paracoccus denitrificans PD1222]
          Length = 571

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   + +G V  + ++GAFV   G  DGL+H++
Sbjct: 181 GNIVVSRRAILEESRAEQRAEVIANLSEGQTV-EGVVKNITEYGAFVDL-GGVDGLLHVT 238

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK +  +  
Sbjct: 239 DMAWRRVNHPSEILSIGETVKVQVVKINKDTHRISLGMKQLQADPW 284



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +  ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 282 DPWDTVGSKFPIGSVHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 341

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D+ + ++ L +K   +N  +
Sbjct: 342 SQEVDVMVLEIDEAKRRVSLGLKQTMRNPWE 372



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           R       +   V  + +G+V  + +FG FV   G  DG+VH+S +S + R  +     +
Sbjct: 368 RNPWEVFAETHPVGTVIEGEVKNITEFGLFVGLEGDIDGMVHLSDISWDTRGEEAIQDFR 427

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   + + D ++ +I LS+K ++ + 
Sbjct: 428 KGDVVKAVVQEVDIEKERISLSIKALENDA 457



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +    +  +   +    V  + D G  V + G +   +  S L+ +R  +  +  + G
Sbjct: 456 DAMAEAVEGIKRGSVITVTVTAIEDGGIEVEYNGMK-SFIRRSDLARDRQDQRPERFQVG 514

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 515 DHVDVRVTNIDTKTRRLGLSIKAREIAEEKEAV 547


>gi|331004384|ref|ZP_08327857.1| hypothetical protein HMPREF0491_02719 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411114|gb|EGG90533.1| hypothetical protein HMPREF0491_02719 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 717

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++   +G+G   ++ IV++      +  D+    I  + + E+E  +E           
Sbjct: 597 KKVSENVGIGEITLKDIVKELEKPGRDPRDEMQKPILRTDVLEMEDLKE----------- 645

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             I KG V  V+DFGAFV     +DGLVHIS+LS + +    + V  GD V V++   D 
Sbjct: 646 GMILKGTVRNVIDFGAFVDIGVHQDGLVHISKLSKKFIKHPLEAVSVGDIVEVRVDSVDL 705

Query: 679 DRGKIKLSM 687
            + +I LSM
Sbjct: 706 KKKRIALSM 714


>gi|301063982|ref|ZP_07204447.1| ribosomal protein S1 [delta proteobacterium NaphS2]
 gi|300441893|gb|EFK06193.1| ribosomal protein S1 [delta proteobacterium NaphS2]
          Length = 599

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   +     I  S  A +EA R  ++  T  + E + + KG V  + D+G F+   G 
Sbjct: 164 KIVKYNKRRGNIVLSRRAILEAERAALKEETLKIIEEDAVLKGVVKNITDYGLFIDL-GG 222

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            DGLVHI+ +S  RV   S++ + GD + VK+L+FD +R ++ L +K +  +  
Sbjct: 223 LDGLVHITDMSWGRVGHPSEMHRVGDEIQVKVLNFDRERERVSLGIKQLTPDPW 276



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +    + +   + +   G+VV + D+GAFV      +GL+H+S++S  R +   S ++  
Sbjct: 274 DPWSQVAENYPIGEKITGRVVSLTDYGAFVEVEQGVEGLIHVSEMSWTRKIRHPSQILNV 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDTV   +L+ D  R +I L MK V+ N  
Sbjct: 334 GDTVDAIVLNMDVQRKRISLGMKQVEPNPW 363



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 31/201 (15%)

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
               R  I   M +V       + E  P    +     +I+N+   G  +  GI E    
Sbjct: 344 MDVQRKRISLGMKQVEPNPWDVIEEKYPVGTTIE---GKIKNITDFGTFI--GIDEGIDG 398

Query: 584 KVNIDDDGTVKIASSSLAEIEAARE-------------------------MIRSITDVPE 618
            V+I D    K         +  +E                             I    +
Sbjct: 399 LVHISDMSWTKRIKHPSELYKKGQEVRAVVLNIDKENERFSLGIKQLTPDPWDEIPAKYK 458

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
                 G V  + DFG F+      +GLVH+S++S ++        +  D +  K+++  
Sbjct: 459 PGTRVTGTVTNITDFGLFIELEEGIEGLVHVSEISGDKRGNPLSRFQIDDVIQTKVINVS 518

Query: 679 DR-GKIKLSMKVVDQNTGKPI 698
            R  KI LS++ ++Q + K I
Sbjct: 519 RREKKIGLSIRKLEQTSEKEI 539


>gi|254501681|ref|ZP_05113832.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437752|gb|EEE44431.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 809

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE------------AAREMIRSITDV 616
                  GI++    K  ID+   +      L+E+E            AA +        
Sbjct: 609 PHLMGDSGILQNLEPKDFIDEKFGLPTVKDILSELEKPGRDPRPEFKTAALQDGVEEILD 668

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +     +G V  V +FGAFV     +DGLVH+SQL+ + V     VVK GD V V +L+
Sbjct: 669 LKPGMKLEGTVTNVTNFGAFVDVGVHQDGLVHVSQLADKFVGDPHTVVKAGDIVKVTILE 728

Query: 677 FD-DRGKIKLSMK 688
            D  R +I ++MK
Sbjct: 729 VDIPRKRISMTMK 741


>gi|225575700|ref|ZP_03784310.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037080|gb|EEG47326.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM
           10507]
          Length = 301

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            +D +    I S+     E A E  ++     EV  + +G V  +  +GAF+       G
Sbjct: 162 EVDKEKKRLILSAREILKEKADEERKAKISNVEVGLVTEGIVESLQPYGAFIDLGNGLSG 221

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           LVHISQ+S +R+   S V+  GD V VK++   D GK+ LSMK +     K I
Sbjct: 222 LVHISQISEKRIKSCSQVLAVGDKVKVKVIAIKD-GKLSLSMKALADVAAKEI 273



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++   + + +     E  +I  G V+ + D    +      +G++H+   S E     
Sbjct: 3   ETMKDYEKELETSFQEIEEGEILTGTVIGITDKEVTLDLKYYTEGVIHVEDFSREPGFHV 62

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
            D V  GD V   ++  DD  G I LS    D
Sbjct: 63  KDEVHTGDEVSAMVMSKDDGNGNILLSKVEAD 94



 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  +      G   K      ++  A V   DDG   I  S +   +        +  + 
Sbjct: 49  IHVEDFSREPGFHVKDEVHTGDEVSAMVMSKDDGNGNILLSKVEADD--VLAWEKLNTLK 106

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +    +  V+  G  V +     G +  S+LS   V    + + +   + V++ + 
Sbjct: 107 EEQTVLDVVIKGVVKSGV-VAYVEGVRGFIPASKLSLSYVDNLEEYLNK--PIQVRVFEV 163

Query: 678 D-DRGKIKLSMKVVDQN 693
           D ++ ++ LS + + + 
Sbjct: 164 DKEKKRLILSAREILKE 180


>gi|78047770|ref|YP_363945.1| transcription-related protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036200|emb|CAJ23891.1| transcription-related protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 787

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   + +G V  V  FGAFV     +DG
Sbjct: 621 DILKELEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D      
Sbjct: 681 LVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTCRLSDTPPAAD 733


>gi|15604379|ref|NP_220895.1| 30S ribosomal protein S1 [Rickettsia prowazekii str. Madrid E]
 gi|6226091|sp|Q9ZD28|RS1_RICPR RecName: Full=30S ribosomal protein S1
 gi|3861071|emb|CAA14971.1| 30S RIBOSOMAL PROTEIN S1 (rpsA) [Rickettsia prowazekii]
 gi|292572134|gb|ADE30049.1| 30S ribosomal protein S1 [Rickettsia prowazekii Rp22]
          Length = 568

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSIT 614
           +A  P    +V  +        ++Q    +++D   G + ++   + E   +      ++
Sbjct: 141 VAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLS 200

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E   + +G V  + D+GAF+   G+ DGL+H++ +S  RV   S+V++    V V +
Sbjct: 201 KIKEGI-VLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMV 258

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKPI 698
           + FD++  +I L +K +D N    I
Sbjct: 259 IKFDEKTKRISLGIKQLDSNPWDAI 283



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V K   G+V    D+G F+      +GLVH S++S  +       ++  G
Sbjct: 279 PWDAIKEEFPVGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIG 338

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L+ D ++ ++ LS+K   +N 
Sbjct: 339 QEVEFIVLEVDTEKHRVSLSIKQCQENP 366



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLL 675
           +  I K  +  + DFG FV      DG++H   +S E     +D++   K+GD +  K+L
Sbjct: 376 IGTIIKAPIRNITDFGIFVVLGNNMDGMIHEGDISWE--DNGTDLLKSYKKGDEIECKVL 433

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             + ++ ++ L +K +  N 
Sbjct: 434 AINFEKEQVSLGIKQLLPNP 453



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             + I+D  + + I K  V ++ D G  V       G +   +LS E+  +  ++ K  +
Sbjct: 453 PYQKISDEYKKSTIVKAVVTEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHE 512

Query: 669 TVWVKLLDFDDR-GKIKLSMKV 689
            +  K++  +   G++ LS+K 
Sbjct: 513 EIDAKVVSIEKSTGRVLLSIKA 534


>gi|206896344|ref|YP_002247530.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738961|gb|ACI18039.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
          Length = 559

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +    +  ++ +G+VV ++  G FV      +G +HISQLS  RV    D V EG
Sbjct: 439 DPWEEVVKNIQPGQLVRGKVVTIIPQGVFVEIADGVEGFIHISQLSIRRVDDPRDAVSEG 498

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
           D +  K++  D +R +I LS+K +
Sbjct: 499 DEIVAKVIGIDEERRRISLSVKAI 522



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 4/143 (2%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +P  ++    G   + +  I +   AK+   D     +  S    +    +   ++    
Sbjct: 306 VPAQEVSWKRGAKVEDLYKIGDHVKAKILRFDPEAQDLILSVKEALG---DPWENVERDF 362

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V    +G VV + DFG FV      +GLV    +S +R    ++VV  GD V V +L  
Sbjct: 363 PVGSKAEGTVVNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGI 422

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           +    KI LSM+    +  + +V
Sbjct: 423 NIVDRKITLSMRDTRPDPWEEVV 445



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           E  +E         + + I +G V ++ D G FV      +G V   +L    +   + V
Sbjct: 178 EEQKERAEKAWLRLKDSDIVRGHVSRITDEGIFVDLGDGIEGFVPKDELDWRPIKNIAKV 237

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
            + GD V  K+L  D+  K + LS+++   N  +
Sbjct: 238 FRRGDVVRAKVLSVDEEKKEMVLSIRLATPNPWQ 271



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +       DD G + ++    A     R++ + + +  +  +  K + V   D G FV  
Sbjct: 70  EVVVTRTNDDKGYISVSQKRAAY----RKLWKDVEEWEKSGESRKVKAVGADDKGVFVDL 125

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
                G V  SQL    V  T   V  G ++ VK+L  +  R +I L+ + V +   K 
Sbjct: 126 GAGILGYVPASQLEIRFVRDTKKYV--GRSLRVKILRVNRKRNQIILTQRQVLEEEQKE 182



 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            GLV   ++S +R AK  D+ K GD V  K+L FD   + + LS+K    +  + +
Sbjct: 303 TGLVPAQEVSWKRGAKVEDLYKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENV 358


>gi|261880508|ref|ZP_06006935.1| YhgF like protein [Prevotella bergensis DSM 17361]
 gi|270332848|gb|EFA43634.1| YhgF like protein [Prevotella bergensis DSM 17361]
          Length = 710

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQL+   V   +DVVK    V VK+++ D  R +I
Sbjct: 645 GIVTNITNFGAFVDIGVHQDGLVHISQLANRFVKDPNDVVKLHQHVRVKVIEVDRRRRRI 704

Query: 684 KLSMK 688
            L+MK
Sbjct: 705 ALTMK 709


>gi|296452521|ref|ZP_06894218.1| YhgF like protein [Clostridium difficile NAP08]
 gi|296881067|ref|ZP_06905010.1| YhgF like protein [Clostridium difficile NAP07]
 gi|296258626|gb|EFH05524.1| YhgF like protein [Clostridium difficile NAP08]
 gi|296427933|gb|EFH13837.1| YhgF like protein [Clostridium difficile NAP07]
          Length = 723

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 108/262 (41%), Gaps = 23/262 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S +L++    ISK +A   +   ++  DF   + +   +     
Sbjct: 482 VVEDSVNSVGVDLNTASYSLLEHIAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQ 541

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       +    K+    I   +  V +++  ++ E
Sbjct: 542 AFTQCAGFMR-ILEGKNPLDNTGVHPE----SYDICKKMIEIIGYSLDDVKNKNIDEIDE 596

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAR 607
               + +      ++   + +G   ++ I+ +      +  ++G   I  + + +IE  +
Sbjct: 597 KIKEIGL-----KELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQ 651

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E             I KG +  V+DFGAFV      DGLVH S++S   V     +V  G
Sbjct: 652 E-----------GMILKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVG 700

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V VK++  D ++ ++ LSMK
Sbjct: 701 DIVDVKVIGIDLNKKRVALSMK 722


>gi|296116782|ref|ZP_06835389.1| 30S ribosomal protein S1 [Gluconacetobacter hansenii ATCC 23769]
 gi|295976704|gb|EFG83475.1| 30S ribosomal protein S1 [Gluconacetobacter hansenii ATCC 23769]
          Length = 406

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E   I  G V  + D+GAFV   G  DGL+H++
Sbjct: 12  GNIVVSRRAVLEETRAEQRSELIQGLKEG-MILDGVVKNITDYGAFVDL-GGVDGLLHVT 69

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++ +R+   S+ ++ G  V V+++ F+ D  +I L MK ++ +  + + 
Sbjct: 70  DIAWKRINHPSEALQIGQPVRVQVIRFNPDTQRISLGMKQLEADPWENVA 119



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++         Y G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 113 DPWENVAIKYPPGARYTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 172

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D  + +I L +K V +N  +
Sbjct: 173 SQEVDVMVLDVDSAKRRISLGLKQVQRNPWE 203



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVV 664
            R       +  +V  + +G++  + +FG F+      DG+VH+S LS +   + +    
Sbjct: 198 QRNPWEQFAEEHKVGSVVEGEIRNITEFGLFIGLSADIDGMVHMSDLSWDETGEVAMTHY 257

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           ++G  V  K+LD D ++ +I L +K + ++     +
Sbjct: 258 EKGQVVKAKVLDVDVEKERISLGIKQLHEDPAADTL 293


>gi|119945506|ref|YP_943186.1| RNA-binding S1 domain-containing protein [Psychromonas ingrahamii
           37]
 gi|119864110|gb|ABM03587.1| RNA binding S1 domain protein [Psychromonas ingrahamii 37]
          Length = 728

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G +  V +FGAFV     +DGLVHISQL+   V+    +VK G  V V++++ D  
Sbjct: 655 MLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNVRVVEIDVQ 714

Query: 680 RGKIKLSMK 688
           R +I LSM+
Sbjct: 715 RKRIALSMR 723


>gi|296330798|ref|ZP_06873274.1| general stress protein 13 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675729|ref|YP_003867401.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152112|gb|EFG92985.1| general stress protein 13 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413973|gb|ADM39092.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 130

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +T   EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MTAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K+L  D ++GKI LS++       K
Sbjct: 61  KVLAVDEEKGKISLSIRATQAAPEK 85


>gi|329770414|ref|ZP_08261796.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325]
 gi|328836537|gb|EGF86197.1| hypothetical protein HMPREF0433_01560 [Gemella sanguinis M325]
          Length = 402

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   + +G V     FGAFV      +GLVHISQ+S +RV   +DV+  GD
Sbjct: 282 QWEVARATIKAGDVLEGVVRNTTAFGAFVEVMDDVEGLVHISQISHDRVNNVTDVLNIGD 341

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVD 691
            V VK+LD D +  ++ LS+K + 
Sbjct: 342 KVSVKVLDVDFENERLSLSIKELQ 365



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E++ S   + + +K+  G V K+ +   +V   GA+ D ++  +Q++ +      +V+  
Sbjct: 7   ELLNSSEMLKKGDKV-TGTVSKIENDKVYVDVAGAQYDCVILRNQITRKPFENIEEVLSV 65

Query: 667 GDTVWVKLLDF--DDRGK-------IKLSMKVVD 691
           GD V  ++     D   +       I LS K+++
Sbjct: 66  GDEVEAQVTGIRTDREKRSEDVPGVIYLSHKILE 99


>gi|288942740|ref|YP_003444980.1| RNA binding S1 domain-containing protein [Allochromatium vinosum
           DSM 180]
 gi|288898112|gb|ADC63948.1| RNA binding S1 domain protein [Allochromatium vinosum DSM 180]
          Length = 402

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 6/232 (2%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VAG+         D   + D+S  E     +DF++   + G     +  +   + E   +
Sbjct: 132 VAGVRAFCPASQIDIRFIEDLS--EFVGQKLDFRITKFEGGRRPNLVVSRRALLEEEQRL 189

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            A +   + +   +   +    +      +      ++ I      +V     +V++   
Sbjct: 190 KAEELRAQLKEGAVLTGTVTSLKDYGAFVDLGGLEGMIHISQLAFGHVKHPK-EVLQVGQ 248

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
               + + I+     K        I A +R+      +        +G+V ++  FGAF+
Sbjct: 249 PIEVSVLRIEPATDAKKRDKIALSIRALSRDPWLDAIEQFPAGTRVQGRVARLQPFGAFI 308

Query: 638 HFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
                 DGLVHIS+L +  RV   SDV+KEGD V   ++  D +R +I LS+
Sbjct: 309 ELAPGVDGLVHISELGAGRRVQHPSDVLKEGDEVTATVIGVDLERRRISLSL 360



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 91/257 (35%), Gaps = 29/257 (11%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT----------DSGITAMQMDMKIG 510
           G     V  G       D++   D  G + + V  T          +SG+  +       
Sbjct: 40  GEEFAFVDLGAKSEGRLDLAVIRDAEGQLKYAVGDTVETHVTGKDEESGMLLLGSQHAHK 99

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
               + +  A +Q    +  +   +          +  F P      I    I ++    
Sbjct: 100 YHGVDELESAYRQGLPVQGQVTGAVKGGCEVQVAGVRAFCPAS---QIDIRFIEDLSEFV 156

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVV 628
           G+ +   + +        + G       S   +    + +++     ++ +  +  G V 
Sbjct: 157 GQKLDFRITKF-------EGGRRPNLVVSRRALLEEEQRLKAEELRAQLKEGAVLTGTVT 209

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD------RGK 682
            + D+GAFV   G  +G++HISQL+   V    +V++ G  + V +L  +       R K
Sbjct: 210 SLKDYGAFVDL-GGLEGMIHISQLAFGHVKHPKEVLQVGQPIEVSVLRIEPATDAKKRDK 268

Query: 683 IKLSMKVVDQNTGKPIV 699
           I LS++ + ++     +
Sbjct: 269 IALSIRALSRDPWLDAI 285


>gi|325289526|ref|YP_004265707.1| Tex-like protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324964927|gb|ADY55706.1| Tex-like protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 717

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  V+DFG FV     +DGLVHIS+++ + +   S++V  GD V V +L  +  
Sbjct: 645 MMLTGTVRNVIDFGVFVDIGVHQDGLVHISEMADKFIRHPSEMVAVGDLVKVVVLAVETK 704

Query: 680 RGKIKLSMKVVDQ 692
           + +I LSMK   Q
Sbjct: 705 KKRISLSMKQAQQ 717


>gi|295698418|ref|YP_003603073.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
 gi|291157307|gb|ADD79752.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
          Length = 554

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +E    K++   +  V    + +       + I  +  + E  ++  G V  + D+GAF+
Sbjct: 154 IEFKIIKLDQRRNNIVVSRKAIIESENN-NDRISLLESLKEGIEV-PGIVKNLTDYGAFI 211

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGL+HI+ +S +RV   S++VK GD + VK+L FD D+ ++ L +K +  +  K
Sbjct: 212 DL-GGVDGLLHITDISWKRVKHPSEIVKIGDNIKVKVLKFDKDKSRVSLGLKQLGIDPWK 270

Query: 697 PIV 699
            I+
Sbjct: 271 GIL 273



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
            +  + I +     K   G+V  + D+G FV      +GLVH+S++   +R    S +V 
Sbjct: 266 IDPWKGILEKYSPGKKIVGKVTNITDYGCFVEIEEGIEGLVHVSEIDWTKRNIHPSKIVN 325

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            G+ + V +LD D+ R +I L +K    N  K
Sbjct: 326 IGEEIKVMILDIDEKRRRISLGLKQCQPNPWK 357



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P +I N+    G+ I+ ++      ++ID+            +    ++   + +   
Sbjct: 318 IHPSKIVNI----GEEIKVMI------LDIDEKRRRISLGLKQCQPNPWKQFSEAHSK-- 365

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLD 676
             N   +G++  + DFG F+   G  DGLVH S +S +   +   V  K+GD +   +L 
Sbjct: 366 --NDRVEGKIKSITDFGIFIELNGGIDGLVHSSDVSWDNSYEEESVKYKKGDLISAVVLQ 423

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K + ++ 
Sbjct: 424 VDFERERISLGIKQLSEDP 442


>gi|306846114|ref|ZP_07478676.1| RNA-binding S1 domain-containing protein [Brucella sp. BO1]
 gi|306273365|gb|EFM55226.1| RNA-binding S1 domain-containing protein [Brucella sp. BO1]
          Length = 767

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 600 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVPRKRIGLTMR 719

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 720 KDGGEAPAP 728


>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
           strain H]
 gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
           knowlesi strain H]
          Length = 246

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 87/248 (35%), Gaps = 21/248 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVG---LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             + ++  R+DGR  +  R I   VG   +     G + +  G+T+ +  +        Q
Sbjct: 5   EYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYI--------Q 56

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               L    ++          P    E  +               R     ++       
Sbjct: 57  GPTELKKSEEKCSIKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLYKN 116

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I   I E DG    A +    LAL+DAG+ I   ++  ++  +++     IL D +
Sbjct: 117 SEINIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLYLQN----RILVDGN 172

Query: 481 GDEDHLGHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E + G  +  +        I  ++ D +   +  +I    ++      +++ N M   
Sbjct: 173 QLEINSGAPELTMVIELNTHKIILLEFDAE---VPIDIFEAMVRTCMDCCVNLGNVMKLT 229

Query: 539 LSESRLQL 546
           + E+ ++L
Sbjct: 230 VKENAIKL 237


>gi|238916861|ref|YP_002930378.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750]
 gi|238872221|gb|ACR71931.1| small subunit ribosomal protein S1 [Eubacterium eligens ATCC 27750]
          Length = 355

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V  + KG V ++ DFGAFV      D L+H+SQ+S +R+ K SD +  G 
Sbjct: 258 PWNNAAEKYAVGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQISRDRIEKPSDALSIGQ 317

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQN 693
            +  K++D ++   KI LS+K +  +
Sbjct: 318 EIEAKVVDLNEADKKISLSIKALLND 343



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 3/140 (2%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           + IP   I +       V  G  E T      D      I       + A +    ++  
Sbjct: 123 VFIPASLISDTFVKDLSVYNGK-EVTFVITEYDPKNRKIIGDCKQLIVAAKKAAAEAVLS 181

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +     +G V  V DFGAF+   G  DGL+HIS++S  R      V K GD+V   + 
Sbjct: 182 KIKEGDTIEGTVKNVTDFGAFIDL-GGVDGLLHISEMSWGRTENPKKVYKIGDSVKCFIK 240

Query: 676 DFDDRGKIKLSMKVVDQNTG 695
           + +   KI LS+K  D N  
Sbjct: 241 EINGD-KIALSVKYPDLNPW 259



 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                      ++  G+V+ V      ++  G  DG++  S+ ++      + VV  GD 
Sbjct: 3   DNEEWKEIRTGEVVDGRVIAVKPDRIVLNIGGKSDGIITRSEYTSAPDVDLTTVVSVGDE 62

Query: 670 VWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           +  K+L   D  G++ L+ + +  + G
Sbjct: 63  MKAKVLKSNDGEGQVALTYRKLVADNG 89


>gi|158521992|ref|YP_001529862.1| ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
 gi|158510818|gb|ABW67785.1| ribosomal protein S1 [Desulfococcus oleovorans Hxd3]
          Length = 604

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++ +G V  + ++G FV   G  DGL+HI+ +S  RV   S++   GD V +K+L FD D
Sbjct: 211 QVVEGIVKNITEYGVFVDL-GGIDGLLHITDISWGRVRHPSELFTVGDNVTLKVLSFDLD 269

Query: 680 RGKIKLSMKVVDQNTGK 696
           + KI L MK +  +  +
Sbjct: 270 KKKISLGMKQLTPDPWE 286



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   S  +   V     G+VV + ++G FV      +GL+H+S++S  R +   S VV  
Sbjct: 283 DPWESAAEKYPVGVKTTGKVVSITNYGIFVELEEGVEGLIHVSEISWTRKIRHPSKVVNI 342

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           G+ V   +LD      +I L MK V+ N  + I
Sbjct: 343 GEEVDAVVLDIQPGNRRISLGMKQVEPNPWEVI 375



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I++   V  + +G++  + DFG F+      DGLVHIS +S  +R+   S++ K+G
Sbjct: 371 PWEVISEKYPVGTVIEGRIKNITDFGLFIGIDDDIDGLVHISDISWTKRIKHPSEIYKKG 430

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           D V   +L+ D    +  + +K ++ +  + +
Sbjct: 431 DLVRAVVLEIDKANERFSMGIKQLESDPWESV 462



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S+ D   +     G V  V DFG FV      +GLVH+S++STER+       + G
Sbjct: 457 DPWESVRDRYPIGTKVSGVVTNVTDFGIFVELEEGIEGLVHVSEVSTERIKTPVGQYEVG 516

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             +  ++++ + D  KI LS+K +D    K ++
Sbjct: 517 AELTARVMNVNADERKIGLSIKRLDVEDDKTLL 549


>gi|325568175|ref|ZP_08144616.1| S1 RNA-binding domain protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158376|gb|EGC70527.1| S1 RNA-binding domain protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 147

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 42/79 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V V +   
Sbjct: 4   EVGAKLKGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLSVGDEVTVLVTAI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
            + GKI LS++  +    +
Sbjct: 64  GNDGKIGLSIRKAEDKPEE 82


>gi|320120527|gb|ADW16175.1| hypothetical protein HMPREF0389_01731 [Filifactor alocis ATCC
           35896]
          Length = 394

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++++      I S  +                 EV  +Y G V  + ++G FV
Sbjct: 147 QEFQAEIIDVEPRKRRLILSRKVIIAREEEAKRDEFVKTLEVGNVYTGVVRDIKNYGMFV 206

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              GA  GLVHIS+LS  R  K  ++ K  D V VK++DFD ++G++ LS+K + ++ 
Sbjct: 207 DL-GAMTGLVHISELSWNRRDKIEELYKVDDEVQVKVVDFDPEKGRLSLSIKALSEDP 263



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 16/177 (9%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  I+    +   +  ++  E       +          + +G    +  I E +  + 
Sbjct: 166 SRKVIIAREEEAKRDEFVKTLEVGNVYTGVVRDIKNYGMFVDLGAMTGLVHISELSWNRR 225

Query: 586 N-------IDDDGTVKIASSSLAEIE-----AA--REMIRSITDVPEVNKIYKGQVVKVM 631
           +       +DD+  VK+      +        A   +   +     +V+ I +  V  + 
Sbjct: 226 DKIEELYKVDDEVQVKVVDFDPEKGRLSLSIKALSEDPFETFRKNAKVDDIIECTVKNIK 285

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSM 687
           ++G FV      DG +HIS LS+  V   ++VV +GD +  +++  ++   K++L+M
Sbjct: 286 EYGVFVKLNETVDGFIHISNLSSSYVKNPNEVVSQGDVITARIISINEETQKVELTM 342



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
             +E+E   +      +      I KG V +V     ++      DG++  S++S +   
Sbjct: 1   MSSEMEKLLQEEEQNYEEVYRGSIVKGYVERVKPDSYYITLNYKTDGVLPRSEMSGD--- 57

Query: 659 KTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691
              + ++ GD V ++++  D   G+I LS K +D
Sbjct: 58  ---EELQVGDEVSLEVIKIDKNTGEIILSKKRLD 88



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           G + ++   E +   + ID +    I S    +   A        D  EV K+   +V +
Sbjct: 56  GDEELQVGDEVSLEVIKIDKNTGEIILSKKRLDAFKA-------WDDLEVGKVIDVKVAE 108

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE--GDTVWVKLLDFDDRG-KIKLS 686
           + + G  V +  +  G + +S ++   V    + ++E  G     +++D + R  ++ LS
Sbjct: 109 IGNKGLIVKYKNSIKGFIPLSHVANRFVKD--EDLQEFAGQEFQAEIIDVEPRKRRLILS 166

Query: 687 MKVV 690
            KV+
Sbjct: 167 RKVI 170


>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
 gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
          Length = 302

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 9/160 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G    E      +G    
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVH-GPA--EGKRSETAGAAGA 71

Query: 373 DFMMHYNFLPCATGEVSRM-----GAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +  N    A  +  +      G   R+       L R A  P +        T+ + 
Sbjct: 72  VINVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVH 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 132 VSVLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGM 171



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 9/137 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA-VGKIPGGYLRRE 81
           S G+   + G T VL TV      K  +        + V      +A V +         
Sbjct: 37  SSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLAGFANVDRKKKSAAGSG 96

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
               +    ++ ++  + +P        ++   V ++V+  D   S     + A + AL+
Sbjct: 97  GGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVSVLSSDG--SLFAACLNACTLALV 154

Query: 140 LSGLPFEGPVVGAQVDY 156
            +G+P  G +    V  
Sbjct: 155 DAGIPMPGLLCACTVGM 171


>gi|41054559|ref|NP_956838.1| nucleolar protein of 40 kDa [Danio rerio]
 gi|33604160|gb|AAH56336.1| Zinc finger, CCHC domain containing 17 [Danio rerio]
          Length = 235

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 7/100 (7%)

Query: 606 AREMIRSITDV---PEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTS 661
           A E +R    +   P +  I KG+VV V  +GAFV   G  + GLVH S++S  RV   +
Sbjct: 2   AEEHMREPVGLDGLPPMYSILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPA 61

Query: 662 DVVKEGDTVWVKLLD---FDDRGKIKLSMKVVDQNTGKPI 698
           ++V  G+ VW+K++     DD+ K+  SM  V+Q TG+ +
Sbjct: 62  EIVDVGEQVWIKVIGKEMKDDKVKLSFSMNSVNQGTGRDL 101


>gi|331090664|ref|ZP_08339513.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400078|gb|EGG79729.1| hypothetical protein HMPREF9477_00156 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 222

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           + E     +++D      + S+     E   +         EV  + +G V  +  +GAF
Sbjct: 78  LKELEVRVIDVDQAENKLVLSAREILKEKENKEKARRLSAVEVGSVLEGTVESLQTYGAF 137

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           V       GLVHISQ+S +R+    DV+  GD V VK++   D GKI LSMK +
Sbjct: 138 VRLENDLSGLVHISQISDKRIKSPKDVLSAGDAVTVKVIGIKD-GKISLSMKAL 190


>gi|325680686|ref|ZP_08160224.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcus
           albus 8]
 gi|324107466|gb|EGC01744.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcus
           albus 8]
          Length = 628

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 576 GIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I ++    + +ID +      +                 +  +  +  K  +V +  FG
Sbjct: 507 SIGDKVTVTIKDIDPETKKVSLTYKKDSEN----PWEIFVNNYKEGQDVKATIVSITSFG 562

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AF       DGL+HISQ++ +RV   +D++  GD V  ++ + D ++ +I LS + +  +
Sbjct: 563 AFAQIIDGIDGLIHISQIANQRVNNVADILAVGDVVDCRITEIDSEKKRISLSRRALLDD 622

Query: 694 TGK 696
             +
Sbjct: 623 EDE 625



 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V    +   E +AA +     T VP      +G V  + D+G FV   G  DGLV  + L
Sbjct: 438 VGSVRAVAREEKAAAQSKFFETAVPGTEM--EGVVKSITDYGVFVDL-GGVDGLVRRADL 494

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           S  R+   SDVV  GD V V + D D +  K+ L+ K   +N  +
Sbjct: 495 SWNRIKHPSDVVSIGDKVTVTIKDIDPETKKVSLTYKKDSENPWE 539



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIY-----KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           E          + KIY     +G V  V D    V       G V +++L+ +   K SD
Sbjct: 272 EEFNLEAIDKTLKKIYPGAKVEGTVESVNDTEVIVDIGTKHTGYVSLNELTDDPTKKPSD 331

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           +V  GDT+ + ++   D  G + LS K VD
Sbjct: 332 IVSVGDTIELIVIKTSDTDGTVLLSKKRVD 361


>gi|325954411|ref|YP_004238071.1| RNA binding S1 domain protein [Weeksella virosa DSM 16922]
 gi|323437029|gb|ADX67493.1| RNA binding S1 domain protein [Weeksella virosa DSM 16922]
          Length = 604

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 178 QIDVKPIRDYDQYVGKTMEFKV----VKINPEFKNVVVSHKALIEADIE--EQKKEIVAQ 231

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G+V  +  +G FV   G  DGL+HI+ LS  R+   S+++++G  + V +LD
Sbjct: 232 LEKGQVLEGEVKNITSYGVFVDL-GGVDGLIHITDLSWSRINHPSEILEDGQKINVVILD 290

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD D+ +I+L +K ++ +  
Sbjct: 291 FDEDKSRIQLGIKQLEPHPW 310



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 100/260 (38%), Gaps = 32/260 (12%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL 521
           I  G +K      ++ D+ G E  L      V         +   M+            +
Sbjct: 150 IVNGYIKARTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDQYVGKTMEF---------KVV 200

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-------I 574
           +     +  +++  + + ++   Q  E   ++E   +   +++N+   G  V       +
Sbjct: 201 KINPEFKNVVVSHKALIEADIEEQKKEIVAQLEKGQVLEGEVKNITSYGVFVDLGGVDGL 260

Query: 575 RGIVEQTGAKVN----IDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVN 620
             I + + +++N    I +DG          + + +R              ++    +V 
Sbjct: 261 IHITDLSWSRINHPSEILEDGQKINVVILDFDEDKSRIQLGIKQLEPHPWDALDPNMKVG 320

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD- 678
              KG+VV + D+GAF+      +GL+H+S++S    +    D VK GD V  ++L  D 
Sbjct: 321 DRVKGKVVVLADYGAFIEVAPGVEGLIHVSEMSWSTHLRSAQDFVKVGDEVEAEILTLDR 380

Query: 679 DRGKIKLSMKVVDQNTGKPI 698
           D  K+ L +K +  +    I
Sbjct: 381 DERKMSLGIKQLSTDPWTDI 400



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V  ++KG+V    +FG FV      DGL++IS LS  +++   S+    
Sbjct: 395 DPWTDITAKYPVGSVHKGKVRNFTNFGVFVELEEGVDGLIYISDLSWTKKIKHPSEFTNV 454

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V +L+ D +  ++ L  K + +N  
Sbjct: 455 DDILDVVVLELDVEARRLSLGHKQLTENPW 484



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            +++KG+VV++ D  A V      +G++ +++            +K GD V V +    D
Sbjct: 67  TEVFKGKVVRLTDKEAIVDIDFKSEGVISLNEFRYNPD------LKVGDEVEVMVDQRED 120

Query: 679 DRGKIKLSMK 688
             G++ LS +
Sbjct: 121 KNGQLVLSHR 130


>gi|320108571|ref|YP_004184161.1| 30S ribosomal protein S1 [Terriglobus saanensis SP1PR4]
 gi|319927092|gb|ADV84167.1| ribosomal protein S1 [Terriglobus saanensis SP1PR4]
          Length = 636

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +     +   I +Q   +V   +     +  S    +E  +   + +T    E   I  G
Sbjct: 208 VRPVRNLDSYIGQQLDVRVIKLNKKRGNVVISRKEILEEEQNSRKDVTLQTLEEGSIMTG 267

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + D+GAFV   G  DGL+HI+ +S  R+    D+V+ GD + VK+L FD ++ ++ 
Sbjct: 268 VVKNLTDYGAFVDL-GGLDGLLHITDMSWGRLTHPRDLVQVGDEIQVKVLKFDKEKQRVS 326

Query: 685 LSMKVVDQNTGKPIV 699
           L  K +  +     +
Sbjct: 327 LGFKQLTPDPWLDAI 341



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +   + +I +G+V  + DFGAF+      DGLVH+S LS  +R+   S+V+K+G
Sbjct: 423 PWEQLENKYPIGEIVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRIKHPSEVLKKG 482

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + V   +L  + +  ++ L +K ++ +  
Sbjct: 483 EKVRAVVLGVEPENRRLSLGVKQLEPDVW 511



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   +    KG+++ V D+GAFV      +GLVH+S+++  +R+   S +VK 
Sbjct: 335 DPWLDAIERYPIGAQVKGRILSVTDYGAFVELEQGIEGLVHVSEMTWSKRMKHPSKMVKP 394

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           GD     +L  +    +I L MK +  N  + +
Sbjct: 395 GDEADTIILAVNPTDRRISLGMKQLQDNPWEQL 427



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++  +      V  + KG+V++   FG FV      +GL H+S+   E     +  ++ G
Sbjct: 509 DVWDTFFAQHRVGDVVKGKVLRSAQFGTFVEIAEGVEGLCHVSEAVNELHQPVT--LEPG 566

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTGK 696
             +  K++    +  K+ LS++ + +   +
Sbjct: 567 QEMEFKIVKMSQEEKKVGLSLRGIGEEASR 596


>gi|268679253|ref|YP_003303684.1| RNA binding S1 domain protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617284|gb|ACZ11649.1| RNA binding S1 domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 558

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 44/254 (17%)

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISE----------------------NIMVMAL 521
             L   D  V GT   IT   M + +GGI                         ++ +  
Sbjct: 199 QELIDRDEVVEGTIKKITTYGMFVDVGGIDGLVHYSEISYKGPVNPGTLYKEGEVIPVKA 258

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRG 576
            +  + + H+   +   + +   ++ +     + + +    I        +G   +    
Sbjct: 259 IKYDKDKRHLSLSVKAAMPDPWDEIKDELETGDSIQVTISNIEPYGAFVDLGNDIEGFLH 318

Query: 577 IVEQTGAK-----VNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNK 621
           I E +  K      +  ++G V        + +  R          +     T   +V  
Sbjct: 319 ISEISWDKNIKHPRDYIEEGQVVDVEVIEIDAKERRLRVSLKNVLAKPFDEFTKKYKVGD 378

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           + KG++  +  FGAFV   G  +GL+H    S +R  K  ++ K GD V VK++  D+  
Sbjct: 379 VVKGEITTITAFGAFVRI-GGIEGLLHNEDASWDRNNKCKELFKVGDEVEVKIVKIDEEA 437

Query: 681 GKIKLSMKVVDQNT 694
            K+ LS K ++ + 
Sbjct: 438 EKVSLSKKELEDSP 451



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID D    I S      +  ++    + ++ + +++ +G + K+  +G FV   G  D
Sbjct: 170 IKIDGDTESIIVSRKKYLDDDRKKRKEIVQELIDRDEVVEGTIKKITTYGMFVDV-GGID 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           GLVH S++S +       + KEG+ + VK + +D   + + LS+K    +    I
Sbjct: 229 GLVHYSEISYKGPVNPGTLYKEGEVIPVKAIKYDKDKRHLSLSVKAAMPDPWDEI 283



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D+   K++ S     +     I+      E   I  G++  + +FG FV 
Sbjct: 424 DEVEVKIVKIDEEAEKVSLSKKELED---SPIQKYAKSHENGDIVHGKIRDIKEFGIFVE 480

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
                D L+    L     A     +K GD +   +   DD+  +I+LS++ +
Sbjct: 481 LEENVDALIRKEDLGQVNEAD----LKVGDEIEAAITFIDDKKNRIRLSVRRL 529


>gi|149201797|ref|ZP_01878771.1| S1 RNA binding domain protein [Roseovarius sp. TM1035]
 gi|149144845|gb|EDM32874.1| S1 RNA binding domain protein [Roseovarius sp. TM1035]
          Length = 775

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + 
Sbjct: 648 KPGMLMEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEV 707

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSM+
Sbjct: 708 DVARKRIGLSMR 719


>gi|326791021|ref|YP_004308842.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
 gi|326541785|gb|ADZ83644.1| RNA binding S1 domain protein [Clostridium lentocellum DSM 5427]
          Length = 382

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 11/182 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +    ++     +H+   +   +      L  F P      +    + ++    GK I
Sbjct: 100 EEIQELFEKKATFTVHVKEVVKGGVVAPIKGLRGFIPGS---QLTNTYVADLAAFVGKDI 156

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
              + +   K        + ++   +A  +A  E  + +  + E  K+  G V K+M +G
Sbjct: 157 EVEIIEFVPK-----SKKLVLSGKRIATEKAQAEKTQKLAALVEGEKV-SGTVTKLMPYG 210

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
           AFV   G  +GLVH + LS  R+   SDVVKEGD V V +   D   GKI LS+K +  +
Sbjct: 211 AFVDL-GGVEGLVHNTDLSWVRIKHPSDVVKEGDKVDVIISSVDQSTGKIALSLKDMTTD 269

Query: 694 TG 695
             
Sbjct: 270 PW 271



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++    ++  D  T KIA S         +         EV  +   +V +   FGAF  
Sbjct: 243 DKVDVIISSVDQSTGKIALSLKDMTT---DPWLLAVSNFEVGDVVPAKVTRFASFGAFAA 299

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
                +GL+HISQ+S +R+ K  + ++ G  V  K++  D +  KI LS+K ++
Sbjct: 300 IADGLEGLIHISQISEKRINKPEEALEIGQEVQAKIVTIDKEAKKIGLSLKELE 353


>gi|114770170|ref|ZP_01447708.1| 30S ribosomal protein S1 [alpha proteobacterium HTCC2255]
 gi|114549007|gb|EAU51890.1| 30S ribosomal protein S1 [alpha proteobacterium HTCC2255]
          Length = 559

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    +  + E + +  G V  + D+GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEIVGKLAEGDAV-DGVVKNITDYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++  RV   S+V+  G+T+ V+++  + D  +I L MK +  +    + 
Sbjct: 227 DMAWSRVNHPSEVLTIGETIKVQVIKINKDTHRISLGMKQLQDDPWGDVA 276



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWGDVAGRFPLESLHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ + D+ ++ L +K    N  +
Sbjct: 330 SQEVEVMVLEIETDKRRVSLGLKQTQGNPWE 360



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLL 675
           PE  ++ +G+V  + +FG F+   G  DG+VH+S L+ ++   +     K+GD V   ++
Sbjct: 367 PEGAEV-EGEVKNITEFGLFIGLEGEIDGMVHLSDLAWDQSGEEALANYKKGDIVKAVVI 425

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
           D D ++ +I LS+K + Q+ 
Sbjct: 426 DVDAEKERISLSVKNLGQDP 445



 Score = 44.1 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++         +   +   +V  + + G  V + G +   +  S LS +R  +  +    
Sbjct: 443 QDPFAEAVSGVKRGAVVTVEVTSIEEGGIEVEYDGMK-AFIRRSDLSRDRAEQRPERFSV 501

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           G+ +  ++   D + + + LS+K  +    K  V
Sbjct: 502 GNKLDARVTSIDAKTRKLGLSIKAREIAEEKEAV 535


>gi|111219982|ref|YP_710776.1| putative transcriptional accessory protein [Frankia alni ACN14a]
 gi|111147514|emb|CAJ59167.1| Putative transcriptional accessory protein [Frankia alni ACN14a]
          Length = 895

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V  V  FGAFV     +DGLVH+S +S   V+   +V K GD V VK+LD D  
Sbjct: 663 MTLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVSDPREVAKPGDIVTVKVLDVDIP 722

Query: 680 RGKIKLSMKVVDQ 692
           R +I L++++ D+
Sbjct: 723 RKRISLTLRLDDE 735


>gi|255037232|ref|YP_003087853.1| 30S ribosomal protein S1 [Dyadobacter fermentans DSM 18053]
 gi|254949988|gb|ACT94688.1| RNA binding S1 domain protein [Dyadobacter fermentans DSM 18053]
          Length = 598

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N  +D  V      + +   A+   + I + 
Sbjct: 160 QIDVKPIRDF----DVFVGKRMEVKVVKINYANDNVVVSHKILIEKDLEAQ--RQQILNN 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G +  + +FG F+   G  DGL+HI+ +S  R+   SD++     + V +LD
Sbjct: 214 LEKGQVLEGVIKNMTNFGVFIDL-GGVDGLLHITDISWGRINHPSDLLSLDQKLNVVVLD 272

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 273 FDEEKKRISLGLKQLQSHPW 292



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +KG V  + +FG F+      DGLVH+S LS  +++   SD VK  D + V +L+ D D 
Sbjct: 394 HKGVVRNLTNFGLFIELEEGIDGLVHVSDLSWTKKIKHPSDFVKVNDELEVVVLELDADN 453

Query: 681 GKIKLSMKVVDQNTG 695
            ++ L  K +++N  
Sbjct: 454 RRLALGHKQLEENPW 468



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               S+ +  +V     G++V V D+GAF+      +GL+H+S++S  + +    + +  
Sbjct: 290 HPWDSLDESIQVGSKVTGRIVNVADYGAFLEIKPGVEGLIHVSEMSWSQHLRNPQEFMNV 349

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            D +   +L  D + + + L +K + ++  
Sbjct: 350 NDEISAVVLTLDRQERKMSLGIKQLTEDPW 379


>gi|146279884|ref|YP_001170042.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides ATCC 17025]
 gi|145558125|gb|ABP72737.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides ATCC 17025]
          Length = 561

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I+++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVISNLYEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQSDPW 272



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDAVEKAYPIGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDSAKRRVSLGLKQTMRNPWE 360



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +   V    +G+V  + +FG FV      DG+VH+S LS  +R  +     +
Sbjct: 356 RNPWEVFAETHPVGTQIEGEVKNITEFGLFVGLEHDIDGMVHLSDLSWDQRGEEAIQNYR 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   + + D D+ +I LS+K +  +T
Sbjct: 416 KGDVVKAVVTEVDTDKERISLSIKALGDDT 445



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   +    V  + D G  V + G +   +  S LS +R  +  +  + GD V V++ +
Sbjct: 453 VKRGSVITVAVTAIEDGGIEVDYNGMK-SFIRRSDLSRDRADQRPERFQVGDKVDVRVTN 511

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 512 VDAKTRRLGLSIKAREIAEEKEAV 535


>gi|255654236|ref|ZP_05399645.1| putative RNA-binding protein [Clostridium difficile QCD-23m63]
          Length = 713

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 108/262 (41%), Gaps = 23/262 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S +L++    ISK +A   +   ++  DF   + +   +     
Sbjct: 472 VVEDSVNSVGVDLNTASYSLLEHIAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQ 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       +    K+    I   +  V +++  ++ E
Sbjct: 532 AFTQCAGFMR-ILEGKNPLDNTGVHPE----SYDICKKMIEIIGYSLDDVKNKNIDEIDE 586

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAR 607
               + +      ++   + +G   ++ I+ +      +  ++G   I  + + +IE  +
Sbjct: 587 KIKEIGL-----KELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQ 641

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E             I KG +  V+DFGAFV      DGLVH S++S   V     +V  G
Sbjct: 642 E-----------GMILKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVG 690

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V VK++  D ++ ++ LSMK
Sbjct: 691 DIVDVKVIGIDLNKKRVALSMK 712


>gi|21242797|ref|NP_642379.1| transcription-related protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108280|gb|AAM36915.1| transcription-related protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 786

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +   + +G V  V  FGAFV     +DG
Sbjct: 621 DILKELEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMVLEGVVSNVAAFGAFVDIGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           LVHIS LS   V    DVVK GD V VK+L+ D  R +I L+ ++ D    
Sbjct: 681 LVHISALSETFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTCRLSDTPPA 731


>gi|84683354|ref|ZP_01011257.1| 30S ribosomal protein S1 [Maritimibacter alkaliphilus HTCC2654]
 gi|84668097|gb|EAQ14564.1| 30S ribosomal protein S1 [Rhodobacterales bacterium HTCC2654]
          Length = 554

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   + +G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLSEGQTV-EGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 221 DMAWRRVNHPSEILSIGETINVQVIKINKETHRISLGMKQLQEDPW 266



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVAAKYPLESVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDQAKRRVSLGLKQTMRNPWE 354



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG F+      DG+VH+S +S  +R         
Sbjct: 350 RNPWEVFAETHPEGTQVEGEVKNITEFGLFIGLDNDIDGMVHLSDISWDQRGEDAIQQFH 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   + + D D+ +I LS+K +D + 
Sbjct: 410 KGDVVKAVVTEVDTDKERISLSIKALDGDP 439



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +  +I    V  + D G  V + G +   +  S LS +R  +  +  + G
Sbjct: 438 DPFAEAVGGVKRGQIITVTVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFQVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DHVDVRVTNVDAKSRRLGLSIKAREIAEEKEAV 529


>gi|126731729|ref|ZP_01747534.1| S1 RNA binding domain protein [Sagittula stellata E-37]
 gi|126707895|gb|EBA06956.1| S1 RNA binding domain protein [Sagittula stellata E-37]
          Length = 788

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 19/147 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMI 610
           D  R ++   G+ IR I+          A+  +DD   +      L+E+E      R   
Sbjct: 571 DVARRIVQACGRDIRAIMGSPEALKGVRAEQFVDDRFGLPTVRDILSELEKPGRDPRPSF 630

Query: 611 RSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ T    V  I         +G V  V  FGAFV     +DGLVH+SQL+   V    +
Sbjct: 631 KTATFTDGVEDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHE 690

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           VVK GD V V++ + D  R +I L+M+
Sbjct: 691 VVKAGDVVKVRVTEVDIPRKRIGLTMR 717


>gi|73667233|ref|YP_303249.1| 30S ribosomal protein S1 [Ehrlichia canis str. Jake]
 gi|72394374|gb|AAZ68651.1| SSU ribosomal protein S1P [Ehrlichia canis str. Jake]
          Length = 567

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 15/191 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A ++ +     I + +    +     +  F P      +   Q++++  + GK 
Sbjct: 134 WQKLEEAAERKEDVEGVIFSSIKCGYTVDIKGVVAFLPASH---VALRQVKDITPLLGKK 190

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
            +  + +   K      G + ++  ++ E   A      ++ + E   I +G+V  +  +
Sbjct: 191 QKFRILKMDNK-----QGNIVVSRKAILEESLADAKSLYLSQLNEG-DIIEGKVKSITKY 244

Query: 634 GAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++  D +  KI L +
Sbjct: 245 GVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIKIDRENKKISLGV 304

Query: 688 KVVDQNTGKPI 698
           K ++++    I
Sbjct: 305 KQLEESPWSNI 315



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              +I     V+ I+KG V  + D+G FV      +GLVH+S++S  + +   + +   G
Sbjct: 311 PWSNIEKKYPVDSIHKGIVTSIEDYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRG 370

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + + VK+L  D  + ++ LSMK   +N  +
Sbjct: 371 EEIQVKVLSIDTAKSRMSLSMKRCQENPWQ 400



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-----ARDGLVHISQLSTERVAKTSDV 663
             ++ T    +  +   ++  + + G FV F         +GL+  ++LS          
Sbjct: 398 PWQAFTLKYPLGSVVSTKIKNITNLGIFVSFEDNTLNDGIEGLIRTTELSWS--LSPEAA 455

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           VK    GD+V  K+L  + ++ KI L +K ++ + 
Sbjct: 456 VKKYSIGDSVEAKILMINPNKSKIDLGVKQLEYDP 490


>gi|323141764|ref|ZP_08076634.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413753|gb|EFY04602.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 689

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++Y G+VVKV +FG FV       GLVH ++LS +R  K +DV KEGD V V +   D +
Sbjct: 500 EVYTGKVVKVAEFGLFVEIGEGLVGLVHNTELSWDRSVKAADVAKEGDEVTVLVKSIDRE 559

Query: 680 RGKIKLSMKVVDQNTGK 696
             ++ LS+K   ++  K
Sbjct: 560 NKRVALSIKATLEDPWK 576



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       +  I   +VV+++ FGA V      +GLVHIS+++ ER+   SDV++ G
Sbjct: 573 DPWKVEASQFHIGDILDVEVVRLLAFGAIVKLSDKVEGLVHISEIAPERIEAPSDVLEVG 632

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V  +++  D D  KI LS+  V ++  K
Sbjct: 633 QVVKAEIIKMDLDSKKIGLSISKVKRDAEK 662



 Score = 41.4 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D  +K A   +  ++    +  S+       K+  G V+++   G +V F    DGL+  
Sbjct: 265 DRLIKEAILVMENMDFESMLNESMEVEVYPGKVVNGTVIQLDKDGVYVSFGYRHDGLIPY 324

Query: 650 SQLSTERVAKTSDV---VKEGDTVWVKLL-DFDDRGKIKLS-MKVVDQNTGKPIV 699
           S+    +     ++   +K GD V  K++        ++LS +K       K + 
Sbjct: 325 SE--WSQTESAEELQNSIKVGDEVEAKVVPGSTKSDFVRLSKIKAERDAAWKNVA 377


>gi|283851123|ref|ZP_06368407.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
 gi|283573519|gb|EFC21495.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
          Length = 507

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 97/259 (37%), Gaps = 20/259 (7%)

Query: 452 GVPISKPVAGIA-MGLVKDGDDFIILSDISGDEDHLGH-MDFKVAGTDSG-ITAMQMDMK 508
           GVP+   V      G   +         +S  +       +  V  T +  IT  + D K
Sbjct: 116 GVPVEGKVTASRKGGFDVEILHRRAFCPVSQIDLAFTDNPEVHVGQTYTFLITTFERDGK 175

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
              +S   +    +     R         V+      +  F      + + P     V  
Sbjct: 176 NIVVSRRKLQEQERAESELRFLESVNPGDVIP---AVVTRFAAFGAFVEVAPGLEGLV-- 230

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPE 618
              ++     E+    V++    TVK+ S    +    R          +   ++ +   
Sbjct: 231 HLSELSWSRAEKAEDAVDLGQAVTVKVLSFDRDKKGRPRISLSIKQAGPDPWDTVGEKFA 290

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677
                +G+V ++ DFGAFV      +GL+H+S++S   R+AK SDVV  G+TV V + D 
Sbjct: 291 AGDRVEGKVTRLADFGAFVEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDV 350

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D  + +I LS+K V  +  
Sbjct: 351 DLSKRRISLSLKEVAGDPW 369



 Score = 43.7 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 14/211 (6%)

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           E     +D   A T   +  +  D    G     + ++++QA       + E        
Sbjct: 241 EKAEDAVDLGQAVT---VKVLSFDRDKKGRPR--ISLSIKQAGPDPWDTVGEKFAAGDRV 295

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
             ++         + I P  I  +I +        + +    V+  +  TV +    L++
Sbjct: 296 EGKVTRLADFGAFVEIAPG-IEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDVDLSK 354

Query: 603 IE-------AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
                     A +   +++D   +    +G V     +G F++      GL+  S+L   
Sbjct: 355 RRISLSLKEVAGDPWAAVSDTFAIGSTVEGTVENRQQYGLFINLAPGVTGLLPASKLRDA 414

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
                 + V  GDTV V + + D ++ K+ L
Sbjct: 415 LEPAPYEKVSSGDTVSVVVSEIDTEKRKMTL 445


>gi|254487164|ref|ZP_05100369.1| transcriptional accessory protein [Roseobacter sp. GAI101]
 gi|214044033|gb|EEB84671.1| transcriptional accessory protein [Roseobacter sp. GAI101]
          Length = 802

 Score = 85.3 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 21/148 (14%)

Query: 564 RNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----------- 606
           R ++   G+ +R I+  +       A+  +DD   +      LAE+E             
Sbjct: 604 RKIVQACGRDVRAIMGDSAALAGLNAEQFVDDSFGLPTVRDILAELEKPGRDPRPAFKTA 663

Query: 607 --REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E I SITD+     + +G V  V  FGAFV     +DGLVH+SQL+   V    +VV
Sbjct: 664 SFAEGIDSITDLKPGMSL-EGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVV 722

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           K GD V V++ + D  R +I L+M+  +
Sbjct: 723 KAGDVVRVRVTEVDVPRKRIGLTMRKDN 750


>gi|323487994|ref|ZP_08093249.1| general stress protein 13 (GSP13) [Planococcus donghaensis MPA1U2]
 gi|323398346|gb|EGA91137.1| general stress protein 13 (GSP13) [Planococcus donghaensis MPA1U2]
          Length = 124

 Score = 85.3 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +T   +      G+V  +  +GAFV       GLVHIS+++   V + S+ ++ G  V V
Sbjct: 1   MTKTYQTGDTVSGKVTGIQPYGAFVALDDQTQGLVHISEITHGYVKEVSEYLEVGQEVDV 60

Query: 673 KLLDFDDR-GKIKLSMKVVDQNT 694
           K+L+ D +  KI LS++ + +  
Sbjct: 61  KVLEVDTKSKKISLSIRALQEQP 83


>gi|237804447|ref|YP_002888601.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272747|emb|CAX09651.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 569

 Score = 85.3 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 113/294 (38%), Gaps = 23/294 (7%)

Query: 423 LRIVSEITESDGSSSMATVCGSS--------LALMDAGVPISKPVA-GIAMGLVKDGDDF 473
           + +  + TE D    + +   ++        LA  + G  +   +   +  GL+ D    
Sbjct: 97  VEVYLDQTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGME 156

Query: 474 IILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L     D   + ++D  V       I  + +D +   +S   ++ A + +K+  L   
Sbjct: 157 AFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQ 216

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
             + +        + +F   +++  I       D     I    +++    E     +++
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV 276

Query: 588 D-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D + G V +                 I       K  +G++VK++ +GAF+      +GL
Sbjct: 277 DKEKGRVALGLKQKEHN-----PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGL 331

Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           +H+S++S  + +   ++VV +GD V V +L    D GKI L +K    N    I
Sbjct: 332 IHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNI 385



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  G
Sbjct: 468 PWDEIEAMFPVGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 527 DKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LTPNPWDEI 472


>gi|52081633|ref|YP_080424.1| general stress protein 13 [Bacillus licheniformis ATCC 14580]
 gi|52787016|ref|YP_092845.1| general stress protein 13 [Bacillus licheniformis ATCC 14580]
 gi|319647549|ref|ZP_08001769.1| YugI protein [Bacillus sp. BT1B_CT2]
 gi|52004844|gb|AAU24786.1| putative polyribonucleotide nucleotidyltransferase YugI [Bacillus
           licheniformis ATCC 14580]
 gi|52349518|gb|AAU42152.1| YugI [Bacillus licheniformis ATCC 14580]
 gi|317390397|gb|EFV71204.1| YugI protein [Bacillus sp. BT1B_CT2]
          Length = 129

 Score = 85.3 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +T   EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MTAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLAVGDEVQV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K+L  D ++GKI LS++       +
Sbjct: 61  KVLSVDEEKGKISLSIRATQAAPER 85


>gi|303245616|ref|ZP_07331899.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
 gi|302492879|gb|EFL52744.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I           G+V  ++D+GAFV      +GLVHIS++S  R +   S +V  
Sbjct: 281 DPWENIAGKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVHV 340

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +L  D ++ +I L MK V  N  
Sbjct: 341 GDEVEVVVLSVDPEKKRISLGMKQVRPNPW 370



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 75/186 (40%), Gaps = 11/186 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    ++       I+  +    +     +  F P   +   P   +  ++G      
Sbjct: 112 DKLEEIQEKDDVITGRIVRRIKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALVGQEF--- 168

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E      M + +    E  ++  G+V  + ++G
Sbjct: 169 ----EFRVLKINRRRSNVIVSRRVLLEE--RRDSMRKDLLKTLEEGQVVTGRVKNITEYG 222

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S +R+    ++V  GD + +K+L FD ++ K+ L MK +  +
Sbjct: 223 VFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQEKQKVSLGMKQLVSD 281

Query: 694 TGKPIV 699
             + I 
Sbjct: 282 PWENIA 287



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + D   V  + KG V  + DFG FV      +GLVH+S++S ++V   +++ KEG
Sbjct: 455 DPWTRVPDTYPVGTMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAELYKEG 514

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVVDQNTGK 696
           D +  K++    D+R ++ LS+K +     K
Sbjct: 515 DEIEAKVIHVSADER-RLGLSIKSIKDEEDK 544



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 102/253 (40%), Gaps = 24/253 (9%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +  G VK+  ++ +  D+ G +   H+  M +K       +  +  ++++  +S +    
Sbjct: 210 VVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFD---Q 266

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
             Q+   G   ++++  + ++    +      +V  +      +    G+ G V   I E
Sbjct: 267 EKQKVSLGMKQLVSDPWENIAGKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLV--HISE 324

Query: 580 QTGAK--------VNIDDDGTVKIASSSLAEIEAAREM-------IRSITDVPEVNKIYK 624
            +  +        V++ D+  V + S    +   +  M          + +      I +
Sbjct: 325 MSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWDIVAEKYPEGTILE 384

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G V  + +FG F+      DGL+H+S +S  ++V    ++ K GD V  K+L  D +  K
Sbjct: 385 GSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEK 444

Query: 683 IKLSMKVVDQNTG 695
             L +K + ++  
Sbjct: 445 FTLGIKQLSEDPW 457


>gi|237802530|ref|YP_002887724.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273764|emb|CAX10545.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/Jali20/OT]
          Length = 569

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 113/294 (38%), Gaps = 23/294 (7%)

Query: 423 LRIVSEITESDGSSSMATVCGSS--------LALMDAGVPISKPVA-GIAMGLVKDGDDF 473
           + +  + TE D    + +   ++        LA  + G  +   +   +  GL+ D    
Sbjct: 97  VEVYLDQTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGME 156

Query: 474 IILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L     D   + ++D  V       I  + +D +   +S   ++ A + +K+  L   
Sbjct: 157 AFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQ 216

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
             + +        + +F   +++  I       D     I    +++    E     +++
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV 276

Query: 588 D-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D + G V +                 I       K  +G++VK++ +GAF+      +GL
Sbjct: 277 DKEKGRVALGLKQKEHN-----PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGL 331

Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           +H+S++S  + +   ++VV +GD V V +L    D GKI L +K    N    I
Sbjct: 332 IHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNI 385



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LTPNPWDEI 472



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  G
Sbjct: 468 PWDEIEAMFPVGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSTG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 527 DKVSAKVIKLDPDHKKVSLSIKE 549


>gi|161579046|ref|NP_296751.2| 30S ribosomal protein S1 [Chlamydia muridarum Nigg]
 gi|270285161|ref|ZP_06194555.1| 30S ribosomal protein S1 [Chlamydia muridarum Nigg]
 gi|270289180|ref|ZP_06195482.1| 30S ribosomal protein S1 [Chlamydia muridarum Weiss]
 gi|301336556|ref|ZP_07224758.1| 30S ribosomal protein S1 [Chlamydia muridarum MopnTet14]
 gi|7404452|sp|P38016|RS1_CHLMU RecName: Full=30S ribosomal protein S1; AltName: Full=70 kDa
           antigen
          Length = 570

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 183 KILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGI 242

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 243 DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHN-----PWED 297

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K  +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V 
Sbjct: 298 IEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVE 357

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           V +L    D GKI L +K  + N    I
Sbjct: 358 VVVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LTPNPWDEI 472



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  D++  G
Sbjct: 468 PWDEIEAMFPVGSDI-SGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 527 DKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    I    E   I KGQ+ + +  G  V      +  +
Sbjct: 106 DEEGKVVLS---REKATRQRQ-WEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + DR  + +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINVDRRNVVVSRRELLE 203


>gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
 gi|156865623|gb|EDO59054.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
          Length = 650

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V  +  G++ ++ DFGAFV      D L+H+SQ+S + VAK  DV K GD
Sbjct: 551 PWLNAEEKYAVGTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGD 610

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            +  K++DF  +  KI LS+K +
Sbjct: 611 EIEAKVVDFKPEEKKISLSVKAL 633



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DD 679
           +I  G ++ V      V      DG++  ++ +    A  +++VK GD + VK++   D 
Sbjct: 306 EIIDGTIIGVKPDEIVVDIKYKSDGIITRNEYTNTPNADLTELVKVGDPITVKVIKTNDG 365

Query: 680 RGKIKLSMKVV 690
            G++ LS K V
Sbjct: 366 EGQVALSYKRV 376


>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
 gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
          Length = 302

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 9/160 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G    E      +G    
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVH-GPA--EGKRSETAGAAGA 71

Query: 373 DFMMHYNFLPCATGEVSRM-----GAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +  N    A  +  +      G   R+       L R A  P +        T+ + 
Sbjct: 72  VINVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVH 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 132 VSVLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGM 171



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 9/137 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA-VGKIPGGYLRRE 81
           S G+   + G T VL TV      K  +        + V      +A V +         
Sbjct: 37  SSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLAGFANVDRKKKSATGSG 96

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
               +    ++ ++  + +P        ++   V ++V+  D   S     + A + AL+
Sbjct: 97  GGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVSVLSSDG--SLFAACLNACTLALV 154

Query: 140 LSGLPFEGPVVGAQVDY 156
            +G+P  G +    V  
Sbjct: 155 DAGIPMPGLLCACTVGM 171


>gi|284048576|ref|YP_003398915.1| hydroxymethylbutenyl pyrophosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952797|gb|ADB47600.1| hydroxymethylbutenyl pyrophosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 680

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +  +G +  ++DFG FV       GLVHIS++S +R  K +D+ K G+ + V +   D +
Sbjct: 488 ETVEGTIKSIVDFGMFVEIAPMVQGLVHISEVSWDRSVKPADLYKVGEKINVYIKGLDEE 547

Query: 680 RGKIKLSMKVVDQNTG 695
           +G+I LS+K + ++  
Sbjct: 548 KGRISLSVKALQEDPW 563



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           + G K+N+   G  +        ++A +E    +      V  +  G VV+ + FGA V 
Sbjct: 532 KVGEKINVYIKGLDEEKGRISLSVKALQEDPWVAAAKEFRVGDVVTGTVVRFLPFGAIVK 591

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                +G++HIS+++ +R+ K  DV++ G  V VK+L  D +  KI LS+    ++  K
Sbjct: 592 LNDKNEGMIHISEIAEQRIDKPEDVLEIGQEVKVKVLRVDTEHKKIALSITKAKEDAEK 650


>gi|218235768|ref|YP_002365082.1| S1 RNA binding domain protein [Bacillus cereus B4264]
 gi|218163725|gb|ACK63717.1| S1 RNA binding domain protein [Bacillus cereus B4264]
          Length = 722

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 132/350 (37%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ            +   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQKRLE-------EVEVSKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|221135015|ref|ZP_03561318.1| RNA binding S1 [Glaciecola sp. HTCC2999]
          Length = 790

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS ++   ++   +VVK GD V VK+++ D  
Sbjct: 651 MILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDGFISDPREVVKTGDVVKVKVMEVDIA 710

Query: 680 RGKIKLSMKVVDQ 692
           R +I  +M++ D+
Sbjct: 711 RKRIAFTMRMGDE 723


>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
          Length = 269

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 10/240 (4%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
               R  +  +++ +D    +  R I  Q G++ +  GS+    GDT+ IV V    RE 
Sbjct: 26  KDKPRDALKGQELEVD--ACDGQRKIYLQTGVITQAKGSAYIEIGDTKVIVSV-FDPREI 82

Query: 360 EQYVD-SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
              +D  L G         + + P +  +   M   +  E     + R+A+   +     
Sbjct: 83  PNRIDYGLKGE----VYCEFKYAPFSCKKRM-MHQQNNEEKQSSDIMRKALESTVCLHEL 137

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
             + + + + + E DGS+  A +    +AL  AGVP+   +  + +G V++G       D
Sbjct: 138 PNFQVDVYAMVLEEDGSALSAAIIAGGVALTLAGVPMYDQITSVTLG-VRNGALIEPPFD 196

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            SG E         V       T +    + G +S+  +   ++   +   +I+  + K 
Sbjct: 197 DSGKEPPSCDNGLVVLSKLHSQTQICQFYQRGFMSKENVKKCIEVLSKQCDNIVPIVQKC 256



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
             R + L+TG I  Q+ G+     G+T V+ +V   R + +  D+      Y E  YA  
Sbjct: 45  GQRKIYLQTGVI-TQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYA-- 101

Query: 72  KIPGGYLRRES-RPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
             P    +R   +    E   S ++ +++       +    +  V   V++ D  +    
Sbjct: 102 --PFSCKKRMMHQQNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALS-- 157

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV 162
            +++A   AL L+G+P    +    +   NG  +
Sbjct: 158 AAIIAGGVALTLAGVPMYDQITSVTLGVRNGALI 191


>gi|254462349|ref|ZP_05075765.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2083]
 gi|206678938|gb|EDZ43425.1| ribosomal protein S1 [Rhodobacteraceae bacterium HTCC2083]
          Length = 557

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 96/259 (37%), Gaps = 23/259 (8%)

Query: 450 DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           D G  +   V  I  G       + +   +   E        ++A  D     ++     
Sbjct: 22  DEGTVVKGKVIAIEAGQAIIDVGYKMEGRVDIKEFANPGEAPEIAVGDEVEVFLRSAENS 81

Query: 510 GG---ISENI---------MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA 557
            G   IS  +         +  A    +R    I   +    +        F P  ++  
Sbjct: 82  RGEAVISREMARREEAWDRLEKAYADEERVEGAIFGRVKGGFTVDLGGAVAFLPGSQVDV 141

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
            P      ++G+        +++          G + ++  ++ E   A +    I ++ 
Sbjct: 142 RPVRDAGPLMGLKQPFQILKMDRRR--------GNIVVSRRAILEESRAEQRAEVIGNLT 193

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + ++GAFV   G  DGL+H++ ++  RV   S+++  G+TV V+++  
Sbjct: 194 EGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVTDMAWRRVNHPSEILTIGETVKVQVIKI 251

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           + +  +I L MK + ++  
Sbjct: 252 NKETHRISLGMKQLQEDPW 270



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 268 DPWDLVAGKYPLESTHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 327

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 328 SQEVEVMVLEIDGTKRRVSLGLKQTQRNPWE 358



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
            R       +        +G+V  + +FG F+   G  DG+VH+S LS  ER  +     
Sbjct: 353 QRNPWEVFAEQFPEGTEVEGEVKNITEFGLFIGLEGDIDGMVHLSDLSWDERGEEAIQSY 412

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            + D V   + + D ++ +I LS+K +
Sbjct: 413 HKNDIVQAVVSEVDVEKERISLSVKAL 439


>gi|166154319|ref|YP_001654437.1| 30S ribosomal protein S1 [Chlamydia trachomatis 434/Bu]
 gi|166155194|ref|YP_001653449.1| 30S ribosomal protein S1 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|255348460|ref|ZP_05380467.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70]
 gi|255503002|ref|ZP_05381392.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70s]
 gi|301335570|ref|ZP_07223814.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2tet1]
 gi|165930307|emb|CAP03793.1| SSU ribosomal protein S1P [Chlamydia trachomatis 434/Bu]
 gi|165931182|emb|CAP06747.1| SSU ribosomal protein S1P [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 569

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 113/294 (38%), Gaps = 23/294 (7%)

Query: 423 LRIVSEITESDGSSSMATVCGSS--------LALMDAGVPISKPVA-GIAMGLVKDGDDF 473
           + +  + TE D    + +   ++        LA  + G  +   +   +  GL+ D    
Sbjct: 97  VEVYLDQTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGME 156

Query: 474 IILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L     D   + ++D  V       I  + +D +   +S   ++ A + +K+  L   
Sbjct: 157 AFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQ 216

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
             + +        + +F   +++  I       D     I    +++    E     +++
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV 276

Query: 588 D-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D + G V +                 I       K  +G++VK++ +GAF+      +GL
Sbjct: 277 DKEKGRVALGLKQKEHN-----PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGL 331

Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           +H+S++S  + +   ++VV +GD V V +L    D GKI L +K    N    I
Sbjct: 332 IHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNI 385



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  G
Sbjct: 468 PWDEIEAMFPVGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 527 DKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LTPNPWDEI 472


>gi|170085647|ref|XP_001874047.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651599|gb|EDR15839.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1163

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTE-RVAKTSDVVKEG 667
            + + P + KIY G+V  + +FGAFV      G  +G+VH+S + T  R    SD++  G
Sbjct: 196 QMDERPVIFKIYNGKVTGLKEFGAFVTLEGVMGRVEGMVHVSSIQTGARANSASDLLSRG 255

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             V VK++      +I LSMK VDQ +G+ +
Sbjct: 256 QQVKVKVMSVAG-NRIGLSMKDVDQVSGRDL 285


>gi|149918403|ref|ZP_01906893.1| hypothetical protein PPSIR1_35722 [Plesiocystis pacifica SIR-1]
 gi|149820703|gb|EDM80113.1| hypothetical protein PPSIR1_35722 [Plesiocystis pacifica SIR-1]
          Length = 793

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E    R+ +  ++D+ E   + +G V  V  FGAFV     +DGLVH+S+LS + V   S
Sbjct: 638 EAPQFRDDVHEMSDLEEGMAL-EGVVTNVTKFGAFVDVGVHQDGLVHVSELSDKWVDDPS 696

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            VVK GD + V++L  D +R +I LS +
Sbjct: 697 KVVKVGDKLKVRVLSVDLERKRIALSAR 724


>gi|302391808|ref|YP_003827628.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203885|gb|ADL12563.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
           arabaticum DSM 5501]
          Length = 676

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++ D    + S      E   +    I    E  ++ +G+V K++DFGAFV   G  +
Sbjct: 437 IEVERDNNNVVLSRKEVLEEERAKKKEEIFASLEEGEVIEGRVTKLVDFGAFVDI-GGVE 495

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GL+HIS++S  R+   SDV++E     VK+L    +  +I L +K +  +  + 
Sbjct: 496 GLLHISEMSWGRIDHPSDVLEEAQETEVKVLGVKPEEERISLGLKQILPDPWEE 549



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      D     ++  G++ K +DFGAF+      +GL+HISQLS   VA T +VV  G
Sbjct: 545 DPWEEFLDNYNEGEVISGKITKTVDFGAFMEIESGVEGLIHISQLSHRHVANTEEVVTAG 604

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D V  K+++ + D  K+ LS+K ++    +
Sbjct: 605 DEVEAKIINIEPDERKVGLSLKELEDKEEQ 634


>gi|289550745|ref|YP_003471649.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315658241|ref|ZP_07911113.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|289180277|gb|ADC87522.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315496570|gb|EFU84893.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
          Length = 392

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ I+  VE+      ++ +    I S    E         S+ D  
Sbjct: 138 ISTDFIEDFSVFDGQTIKIKVEE------LEPEKNRVILSRKAVEQAENEVKKASLLDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               + KG+V ++ +FGAF+   G  DGLVH+S+LS E V    DVV  G  V VK+   
Sbjct: 192 NAGDVIKGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVDSPEDVVSVGQEVEVKVKSV 250

Query: 678 D-DRGKIKLSMKVVDQNT 694
           + D  +I LS+K      
Sbjct: 251 EKDSERISLSIKDTLPTP 268



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G VV++  FGAFV       GLVHIS++  + +   S+ ++ G  V VK+L  D+ 
Sbjct: 280 DVIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDED 339

Query: 681 G-KIKLSMKVVDQNT 694
             +I LS+K    N 
Sbjct: 340 NERISLSIKATLPNE 354



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 70/170 (41%), Gaps = 18/170 (10%)

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------------VEQTGAKVNI 587
            +   ++ +   +  ++ I   +   +I +       I            +E    K+ +
Sbjct: 17  DKITGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSVGDSIEAYVTKIEV 76

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++        S  ++E  +     + +    +++ + +V +V+  G  V     + G V
Sbjct: 77  DEENESGAYILSKRQLETEKS-YEYLQEKLNNDEVIEAKVTEVVKGGLVVDV--GQRGFV 133

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             S +ST+ +   S  V +G T+ +K+ + + ++ ++ LS K V+Q   +
Sbjct: 134 PASLISTDFIEDFS--VFDGQTIKIKVEELEPEKNRVILSRKAVEQAENE 181



 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   ++VV  
Sbjct: 4   EFNESMINDIKEGDKITGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD++   +        ++ G   LS + ++
Sbjct: 64  GDSIEAYVTKIEVDEENESGAYILSKRQLE 93


>gi|217963527|ref|YP_002349205.1| General stress protein 13 (GSP13) [Listeria monocytogenes HCC23]
 gi|217332797|gb|ACK38591.1| General stress protein 13 (GSP13) [Listeria monocytogenes HCC23]
 gi|307571897|emb|CAR85076.1| S1 RNA binding domain protein [Listeria monocytogenes L99]
          Length = 117

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|76788812|ref|YP_327898.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/HAR-13]
 gi|255310900|ref|ZP_05353470.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276]
 gi|255317200|ref|ZP_05358446.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276s]
 gi|76167342|gb|AAX50350.1| SSU ribosomal protein S1P [Chlamydia trachomatis A/HAR-13]
 gi|296435615|gb|ADH17789.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|296436538|gb|ADH18708.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|296437475|gb|ADH19636.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|297139974|gb|ADH96732.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
          Length = 569

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 113/294 (38%), Gaps = 23/294 (7%)

Query: 423 LRIVSEITESDGSSSMATVCGSS--------LALMDAGVPISKPVA-GIAMGLVKDGDDF 473
           + +  + TE D    + +   ++        LA  + G  +   +   +  GL+ D    
Sbjct: 97  VEVYLDQTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGME 156

Query: 474 IILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L     D   + ++D  V       I  + +D +   +S   ++ A + +K+  L   
Sbjct: 157 AFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQ 216

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
             + +        + +F   +++  I       D     I    +++    E     +++
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV 276

Query: 588 D-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D + G V +                 I       K  +G++VK++ +GAF+      +GL
Sbjct: 277 DKEKGRVALGLKQKEHN-----PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGL 331

Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           +H+S++S  + +   ++VV +GD V V +L    D GKI L +K    N    I
Sbjct: 332 IHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNI 385



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  G
Sbjct: 468 PWDEIEAMFPVGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 527 DKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LTPNPWDEI 472


>gi|15604817|ref|NP_219601.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/UW-3/CX]
 gi|255506673|ref|ZP_05382312.1| 30S ribosomal protein S1 [Chlamydia trachomatis D(s)2923]
 gi|6831540|sp|O84100|RS1_CHLTR RecName: Full=30S ribosomal protein S1
 gi|3328495|gb|AAC67689.1| S1 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|289525142|emb|CBJ14614.1| SSU ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|296434686|gb|ADH16864.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|297748227|gb|ADI50773.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|297749107|gb|ADI51785.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-LC]
          Length = 569

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 113/294 (38%), Gaps = 23/294 (7%)

Query: 423 LRIVSEITESDGSSSMATVCGSS--------LALMDAGVPISKPVA-GIAMGLVKDGDDF 473
           + +  + TE D    + +   ++        LA  + G  +   +   +  GL+ D    
Sbjct: 97  VEVYLDQTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGME 156

Query: 474 IILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L     D   + ++D  V       I  + +D +   +S   ++ A + +K+  L   
Sbjct: 157 AFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQ 216

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
             + +        + +F   +++  I       D     I    +++    E     +++
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV 276

Query: 588 D-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D + G V +                 I       K  +G++VK++ +GAF+      +GL
Sbjct: 277 DKEKGRVALGLKQKEHN-----PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGL 331

Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           +H+S++S  + +   ++VV +GD V V +L    D GKI L +K    N    I
Sbjct: 332 IHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNI 385



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  G
Sbjct: 468 PWDEIEVMFPVGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 527 DKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LTPNPWDEI 472


>gi|326384710|ref|ZP_08206387.1| transcriptional accessory protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196518|gb|EGD53715.1| transcriptional accessory protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 803

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G  V 
Sbjct: 646 EKVSDLQPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYVSDPHEVVRSGQVVK 705

Query: 672 VKLLDFD-DRGKIKLSMKVVDQ 692
           VK+L  D DR +I LS+++ D+
Sbjct: 706 VKVLAVDVDRQRIGLSLRLNDE 727


>gi|288802929|ref|ZP_06408366.1| ribosomal protein S1 [Prevotella melaninogenica D18]
 gi|288334746|gb|EFC73184.1| ribosomal protein S1 [Prevotella melaninogenica D18]
          Length = 594

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 159 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV     + V +LD
Sbjct: 213 LEKGQILEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVALDQKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K + Q+  
Sbjct: 272 FDEEKKRIALGLKQLTQHPW 291



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 134 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 193

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + +    +  ++ +    
Sbjct: 194 HKALIEAELEAQRKEIISHLEKGQILEGTVKNITSY-----GVFVDLGGVDGLVHITDLS 248

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A       +    S+    +V    KG+
Sbjct: 249 -WGRVSDPHEVVALDQKINVVILDFDEEKKRIALGLKQLTQHPWDSLDPNLKVGDHVKGK 307

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D  K+ 
Sbjct: 308 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDERKMS 367

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 368 LGIKQLKEDPWEAI 381



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 376 DPWEAIEVKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTSQ 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D +  ++ L  K ++ N    
Sbjct: 436 GSEIEVVVLEIDKENRRLSLGHKQLESNPWDE 467



 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  + +++ +G V+ V      V+     DG++  S+            +K GD V V +
Sbjct: 43  NKIQEHQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRY----NPE--LKAGDKVEVYV 96

Query: 675 LDF-DDRGKIKLSMKVV-DQNTGKPI 698
            +  D RG++ LS K    Q + + I
Sbjct: 97  ENQEDKRGQLVLSHKKARLQKSWENI 122


>gi|327438077|dbj|BAK14442.1| predicted RNA binding protein [Solibacillus silvestris StLB046]
          Length = 142

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|296438403|gb|ADH20556.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
          Length = 569

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 275

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 276 VDKEKGRVALGLKQKEHNPWEDI 298



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 113/294 (38%), Gaps = 23/294 (7%)

Query: 423 LRIVSEITESDGSSSMATVCGSS--------LALMDAGVPISKPVA-GIAMGLVKDGDDF 473
           + +  + TE D    + +   ++        LA  + G  +   +   +  GL+ D    
Sbjct: 97  VEVYLDQTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGME 156

Query: 474 IILSDISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
             L     D   + ++D  V       I  + +D +   +S   ++ A + +K+  L   
Sbjct: 157 AFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQ 216

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIP-----PDQIRNVIGMGGKVIRGIVEQTGAKVNI 587
             + +        + +F   +++  I       D     I    +++    E     +++
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV 276

Query: 588 D-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           D + G V +                 I       K  +G++VK++ +GAF+      +GL
Sbjct: 277 DKEKGRVALGLKQKEHN-----PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGL 331

Query: 647 VHISQLST-ERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           +H+S++S  + +   ++VV +GD V V +L    D GKI L +K    N    I
Sbjct: 332 IHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNI 385



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  G
Sbjct: 468 PWDEIEAMFPVGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 527 DKVSAKVIKLDPDHKKVSLSIKE 549



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 285 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 343

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 344 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLT 403

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 404 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 463

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 464 LTPNPWDEI 472


>gi|227821409|ref|YP_002825379.1| putative RNA-binding domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
 gi|227340408|gb|ACP24626.1| putative RNA-binding domain transcriptional regulator
           [Sinorhizobium fredii NGR234]
          Length = 766

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + 
Sbjct: 646 KVGMQLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRVTEV 705

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSM+
Sbjct: 706 DVARKRIGLSMR 717


>gi|226360123|ref|YP_002777901.1| 30S ribosomal protein S1 [Rhodococcus opacus B4]
 gi|226238608|dbj|BAH48956.1| 30S ribosomal protein S1 [Rhodococcus opacus B4]
          Length = 494

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   
Sbjct: 282 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVN 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDALVKVIDIDLERRRISLSLKQANED 368



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 167 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFV 226

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 227 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWR 285



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|239623425|ref|ZP_04666456.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522391|gb|EEQ62257.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 714

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDV 616
           +   ++ + + +G   +R I  +             K A     E+              
Sbjct: 591 VDYRKMASELEVGEITLRDIAGELE-----------KPARDPRDEMPKPILRSDILEMKD 639

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   + KG V  V+DFGAFV     +DGLVHISQL+   +    + V  GD V VK++ 
Sbjct: 640 LKPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQLTDRYIKHPLEAVSVGDVVDVKIIS 699

Query: 677 FD-DRGKIKLSMKVV 690
            D  + +I L+MK +
Sbjct: 700 VDLAKKRIALTMKGI 714


>gi|304436633|ref|ZP_07396602.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370329|gb|EFM23985.1| possible ribosomal protein S1 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 376

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   VE    ++++     V      L    A +E        PE  +I +G V +++D+
Sbjct: 150 VDQTVEAEIIEIDVQKRRLVLSRRKLLERDRAEKEEAVFSAIEPE--QIVRGTVKRLVDY 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL HIS L+  RV   S+V++ G  + V +   D D  +I LS+K    
Sbjct: 208 GAFIDI-GGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSVDRDAKRISLSVKDTLP 266

Query: 693 NTG 695
           +  
Sbjct: 267 DPW 269



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +        +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  G
Sbjct: 267 DPWVEKAEKYAEGDFIEGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTG 326

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           D V VK+L  D  R +I LS+
Sbjct: 327 DVVVVKVLRIDTKRKRISLSI 347


>gi|326563237|gb|EGE13504.1| RNA binding protein S1 [Moraxella catarrhalis 46P47B1]
 gi|326569274|gb|EGE19335.1| RNA binding protein S1 [Moraxella catarrhalis BC7]
 gi|326571951|gb|EGE21956.1| RNA binding protein S1 [Moraxella catarrhalis BC8]
          Length = 788

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V  FG FV     +DGLVHIS+LS   VA  +DVVK  D V V+++  
Sbjct: 657 KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKPQDIVTVRVISV 716

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I  SMK
Sbjct: 717 DEVRGRIGFSMK 728


>gi|326562258|gb|EGE12584.1| RNA binding protein S1 [Moraxella catarrhalis 103P14B1]
 gi|326575461|gb|EGE25386.1| RNA binding protein S1 [Moraxella catarrhalis 101P30B1]
          Length = 788

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V  FG FV     +DGLVHIS+LS   VA  +DVVK  D V V+++  
Sbjct: 657 KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKPQDIVTVRVISV 716

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I  SMK
Sbjct: 717 DEVRGRIGFSMK 728


>gi|296112291|ref|YP_003626229.1| RNA binding protein S1 [Moraxella catarrhalis RH4]
 gi|295919984|gb|ADG60335.1| RNA binding protein S1 [Moraxella catarrhalis RH4]
          Length = 788

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V  FG FV     +DGLVHIS+LS   VA  +DVVK  D V V+++  
Sbjct: 657 KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVANPADVVKPQDIVTVRVISV 716

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I  SMK
Sbjct: 717 DEVRGRIGFSMK 728


>gi|111017993|ref|YP_700965.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1]
 gi|110817523|gb|ABG92807.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1]
          Length = 494

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV   
Sbjct: 282 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVN 341

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           D   VK++D D +R +I LS+K  +++
Sbjct: 342 DDALVKVIDIDLERRRISLSLKQANED 368



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFV 637
           ++  AK+   D     +  S  A +E  +  +RS      +  ++ KG V  +++FGAFV
Sbjct: 167 KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGIVSSIVNFGAFV 226

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  DGLVH+S+LS + +   S+VV+ G  V V++LD D DR ++ LS+K   ++  +
Sbjct: 227 DL-GGVDGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWR 285



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I +G +VKV      +      +G++   +LS +     ++VV  GD V   +L   D 
Sbjct: 37  DIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDK 96

Query: 680 RGKIKLSMKVVD 691
            G++ LS K   
Sbjct: 97  EGRLILSKKRAQ 108


>gi|77465591|ref|YP_355094.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides 2.4.1]
 gi|126464030|ref|YP_001045143.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides ATCC 17029]
 gi|4761123|gb|AAD29257.1|AF107093_2 ribosomal protein S1 [Rhodobacter sphaeroides]
 gi|77390009|gb|ABA81193.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides 2.4.1]
 gi|126105841|gb|ABN78371.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides ATCC 17029]
          Length = 561

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I+++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVISNLFEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQSDPW 272



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDAVEKAYPIGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDSAKRRVSLGLKQTMRNPWE 360



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +   V    +G+V  + +FG FV      DG+VH+S LS  +R  +     +
Sbjct: 356 RNPWEVFAETHPVGTPIEGEVKNITEFGLFVGLEHDIDGMVHLSDLSWDQRGEEAIQNYR 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   + + D D+ +I LS+K +  +T
Sbjct: 416 KGDVVKAVVTEVDTDKERISLSIKALGDDT 445



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   +    V  + D G  V +   +   +  S LS +R  +  +  + GD V V++ +
Sbjct: 453 VKRGSVITVTVTAIEDGGIEVEYNSMK-SFIRRSDLSRDRADQRPERFQVGDKVDVRVTN 511

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 512 VDAKTRRLGLSIKAREIAEEKEAV 535


>gi|288930029|ref|ZP_06423870.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328688|gb|EFC67278.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 726

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E  A  E + +I D+     +  G V  +  FGAFV     +DGLVH+SQL+   VA  +
Sbjct: 638 EEFAFDERVHTIADLVPG-MLLPGIVTNITKFGAFVDVGVHQDGLVHVSQLANRYVADPA 696

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +VVK    V VK+++ D  R +I L+MK V
Sbjct: 697 EVVKLHQHVQVKVVEVDTRRNRISLTMKGV 726


>gi|302346248|ref|YP_003814546.1| 30S ribosomal protein S1 [Prevotella melaninogenica ATCC 25845]
 gi|302151016|gb|ADK97277.1| 30S ribosomal protein S1 [Prevotella melaninogenica ATCC 25845]
          Length = 594

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 159 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV     + V +LD
Sbjct: 213 LEKGQILEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVALDQKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K + Q+  
Sbjct: 272 FDEEKKRIALGLKQLTQHPW 291



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 134 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 193

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + +    +  ++ +    
Sbjct: 194 HKALIEAELEAQRKEIISHLEKGQILEGTVKNITSY-----GVFVDLGGVDGLVHITDLS 248

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A       +    S+    +V    KG+
Sbjct: 249 -WGRVSDPHEVVALDQKINVVILDFDEEKKRIALGLKQLTQHPWDSLDPNLKVGDHVKGK 307

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D  K+ 
Sbjct: 308 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDERKMS 367

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 368 LGIKQLKEDPWEAI 381



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 376 DPWEAIEVKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTSQ 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D +  ++ L  K ++ N    
Sbjct: 436 GSEIEVVVLEIDKENRRLSLGHKQLESNPWDE 467



 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  + +++ +G V+ V      V+     DG++  S+            +K GD V V +
Sbjct: 43  NKIQEHQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRY----NPE--LKAGDKVEVYV 96

Query: 675 LDF-DDRGKIKLSMKVV-DQNTGKPI 698
            +  D RG++ LS K    Q + + I
Sbjct: 97  ENQEDKRGQLVLSHKKARLQKSWENI 122


>gi|253699629|ref|YP_003020818.1| 30S ribosomal protein S1 [Geobacter sp. M21]
 gi|251774479|gb|ACT17060.1| ribosomal protein S1 [Geobacter sp. M21]
          Length = 584

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +  GG + R + +    ++   +     +  S    +E  RE  R+ T    +   I  G
Sbjct: 163 LRPGGNMDRFVGQTYQFRILKLNRKRGNLVLSRRVLLEEEREKARTETLATLKEGDIVNG 222

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + ++GAFV   G  DGL+H++ +S  R+   S++VK GDT+ V +L +D ++GKI 
Sbjct: 223 VVKNIAEYGAFVDL-GGVDGLLHVTDMSWGRLGHPSEMVKVGDTLNVMVLKYDREKGKIS 281

Query: 685 LSMKVVDQNTG 695
           L +K    +  
Sbjct: 282 LGLKQTVPDPW 292



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    I          KG+V  V DFG FV      +GL+H+S++S E+VA   D   
Sbjct: 462 AADPWEEIPRKYRPGSKVKGRVTSVTDFGIFVEIEEGIEGLIHVSEISYEKVASPKDFAN 521

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            GD +   +L+ D    KI LS+K + 
Sbjct: 522 VGDELEAVVLNVDMVEKKIALSIKALQ 548



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ D     +   G+VV + D+GAF+      +GLVH+S++S   RV   S+++K 
Sbjct: 290 DPWLNVGDRYREGERVSGKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEILKV 349

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G+ V   +L  D    +I L +K  + N  
Sbjct: 350 GEEVEAVILGVDPGNRRISLGLKQTEINPW 379



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P   KI +GQ+  + DFG F+      DGLVH+S +S   RV    ++  +G TV   +L
Sbjct: 387 PVGTKI-EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTRRVKHPGEMFTKGQTVQAVVL 445

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
           + D +  ++ L +K +  +  + I
Sbjct: 446 NIDVENERLSLGIKQLAADPWEEI 469


>gi|251812215|ref|ZP_04826688.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251804312|gb|EES56969.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 232

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D+ +GK+
Sbjct: 164 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 223

Query: 684 KLSMKVVDQ 692
            L+M   ++
Sbjct: 224 SLTMVAPNE 232


>gi|311069638|ref|YP_003974561.1| general stress protein 13 [Bacillus atrophaeus 1942]
 gi|310870155|gb|ADP33630.1| general stress protein 13 [Bacillus atrophaeus 1942]
          Length = 130

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MAAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K+L  D ++GKI LS++       K
Sbjct: 61  KVLSVDEEKGKISLSIRATQAAPEK 85


>gi|168205615|ref|ZP_02631620.1| ribosomal protein S1 family [Clostridium perfringens E str.
           JGS1987]
 gi|170662936|gb|EDT15619.1| ribosomal protein S1 family [Clostridium perfringens E str.
           JGS1987]
          Length = 378

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 30/229 (13%)

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR----LQLGEFTPRV 553
           +G+       +  G     +   +++    R+   N+ ++ +  SR     ++     + 
Sbjct: 128 NGLRVFMPASQCAGRRIENLEELVEKTLEVRVIEFNKDNRKVVVSRRVIDEEIRNNEKKA 187

Query: 554 EIMAIP-----PDQIRNVIGMGGKVIRGIVE--------------QTGAKVNIDDDGTVK 594
              +I        ++  +   G  V  G VE              +    V++ D+  V 
Sbjct: 188 LWSSIKEGEKRKGKVTRLAKFGAFVDIGGVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVF 247

Query: 595 IASSSLAEIEAA------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++   +     A       +      +  +V  +  G+V   +  GAFV      +GLVH
Sbjct: 248 VSEVDMDRERIALSLKDVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVLPGIEGLVH 307

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           IS+++ E +AK SD+++ G  V VK+L+ DD   K+ LS+K   + + +
Sbjct: 308 ISEITDENIAKPSDILELGQEVKVKILNIDDENKKMSLSIKDAVETSNE 356


>gi|320102727|ref|YP_004178318.1| 30S ribosomal protein S1P [Isosphaera pallida ATCC 43644]
 gi|319750009|gb|ADV61769.1| SSU ribosomal protein S1P [Isosphaera pallida ATCC 43644]
          Length = 594

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 23/233 (9%)

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           L  +   V    S +   +       I + I  + L+  +  R  +++    +     LQ
Sbjct: 140 LVDIGVNVFLPASQVDIRRPPDIGDYIDQEIECVILKIDEARRNIVVSRRKLIEMTRELQ 199

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKV-------IRGIVEQTGAKVN-------IDDDG 591
                  +E   I    ++N+   G  V       +  I + +  ++N       I+D+ 
Sbjct: 200 KKTLLAEIEPGQIRKGVVKNIADFGAFVDLGGIDGLLHITDMSWGRINNPTDMVAINDEI 259

Query: 592 TVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            V +      + + A            ++ +   V     G+VV VM +GAFV      +
Sbjct: 260 EVYVIHVDKEKEKIALGLKQKTASPWDNVAEKYPVGSKVTGEVVNVMSYGAFVKLEEGIE 319

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GLVHIS++S  +R+   S++V  GD V V +L+ +   + I L MK    N  
Sbjct: 320 GLVHISEMSWTKRINHPSELVNIGDKVEVVVLNINKEKQEISLGMKQTQINPW 372



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                I    + N++  G+V K+ +FG FV      +GL+HIS+LS ++V    DVV+ G
Sbjct: 458 PWENDIPKRYQPNQMVTGKVTKLTNFGVFVELEPGLEGLLHISELSDQKVESPDDVVQLG 517

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             + V++L  D +  KI LS+K
Sbjct: 518 QEIEVRVLRVDRNERKIGLSLK 539



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVK 629
           G  I   +E    K+   D+    I  S    IE  RE   +++    E  +I KG V  
Sbjct: 163 GDYIDQEIECVILKI---DEARRNIVVSRRKLIEMTRELQKKTLLAEIEPGQIRKGVVKN 219

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + DFGAFV   G  DGL+HI+ +S  R+   +D+V   D + V ++  D ++ KI L +K
Sbjct: 220 IADFGAFVDL-GGIDGLLHITDMSWGRINNPTDMVAINDEIEVYVIHVDKEKEKIALGLK 278

Query: 689 VVDQNTGKPIV 699
               +    + 
Sbjct: 279 QKTASPWDNVA 289



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 102/256 (39%), Gaps = 28/256 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G+VK+  DF    D+ G +   H+  M +      + + A+  ++        + V+
Sbjct: 212 IRKGVVKNIADFGAFVDLGGIDGLLHITDMSWGRINNPTDMVAINDEI-------EVYVI 264

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM--GGKVIRGI 577
            + + K      L + +    ++  +      +V    +        + +  G + +  I
Sbjct: 265 HVDKEKEKIALGLKQKTASPWDNVAEKYPVGSKVTGEVVNVMSYGAFVKLEEGIEGLVHI 324

Query: 578 VEQTGAK--------VNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKI 622
            E +  K        VNI D   V + + +           +        +      N  
Sbjct: 325 SEMSWTKRINHPSELVNIGDKVEVVVLNINKEKQEISLGMKQTQINPWDQVAVKYPPNTE 384

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G V  + ++GAF+      DGL+HIS +S  R +   ++++++G+ +  ++L  D +R
Sbjct: 385 IEGTVRNLTNYGAFIEIEEGIDGLLHISDMSWTRKIGHPNELLQKGERIRCQVLSVDQER 444

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L +K + ++  +
Sbjct: 445 KRIALGLKQLREDPWE 460


>gi|150388019|ref|YP_001318068.1| RNA-binding S1 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149947881|gb|ABR46409.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 138

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  + +G V  + +FGAF+     + GLVHIS+++ + V    D +K+   V VK+L 
Sbjct: 3   VQVGTVVEGTVSGITNFGAFIDLGEGQTGLVHISEVADDYVKNIRDYLKDDQKVKVKVLS 62

Query: 677 FDDRGKIKLSMKV 689
               GKI LS+K 
Sbjct: 63  IGKDGKISLSIKQ 75


>gi|18311456|ref|NP_563390.1| hypothetical protein CPE2474 [Clostridium perfringens str. 13]
 gi|110801416|ref|YP_697162.1| hypothetical protein CPF_2797 [Clostridium perfringens ATCC 13124]
 gi|110802862|ref|YP_699730.1| hypothetical protein CPR_2483 [Clostridium perfringens SM101]
 gi|168206869|ref|ZP_02632874.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|168218338|ref|ZP_02643963.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|169343178|ref|ZP_02864199.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|182627411|ref|ZP_02955025.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|18146140|dbj|BAB82180.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110676063|gb|ABG85050.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110683363|gb|ABG86733.1| RNA-binding protein [Clostridium perfringens SM101]
 gi|169298730|gb|EDS80806.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170661722|gb|EDT14405.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|177907094|gb|EDT69975.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|182379661|gb|EDT77140.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 134

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+++ + +FGAFV   G + GLVHIS+++   V    + +KE D V VK++  DD+G
Sbjct: 8   ILEGRIINITNFGAFVEVEG-KTGLVHISEVADTYVKDIREHLKEDDKVKVKVISVDDKG 66

Query: 682 KIKLSMKVVDQNTGKPI 698
           KI LS+K       K +
Sbjct: 67  KISLSIKQAMPPKKKSV 83


>gi|295401972|ref|ZP_06811934.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109210|ref|YP_003987526.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
 gi|294975974|gb|EFG51590.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214311|gb|ADP72915.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 132

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDVVHVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  G+I LS+K
Sbjct: 64  EKDGRIGLSIK 74


>gi|229824542|ref|ZP_04450611.1| hypothetical protein GCWU000282_01886 [Catonella morbi ATCC 51271]
 gi|229785913|gb|EEP22027.1| hypothetical protein GCWU000282_01886 [Catonella morbi ATCC 51271]
          Length = 166

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 42/79 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G+V  +  FGAF+     + GLVHIS++S   V + S V+  G  V VK+L  
Sbjct: 4   EVGQKITGKVTGITHFGAFISLPDNKTGLVHISEVSDGYVKEISSVLTVGQEVAVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
            D GKI LS++       +
Sbjct: 64  ADDGKISLSIRQASDRPAE 82


>gi|221369598|ref|YP_002520694.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides KD131]
 gi|332561263|ref|ZP_08415581.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides WS8N]
 gi|221162650|gb|ACM03621.1| SSU ribosomal protein S1P [Rhodobacter sphaeroides KD131]
 gi|332275061|gb|EGJ20377.1| 30S ribosomal protein S1 [Rhodobacter sphaeroides WS8N]
          Length = 555

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I+++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVISNLFEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 221 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQSDPW 266



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDAVEKAYPIGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVDVMVLEIDSAKRRVSLGLKQTMRNPWE 354



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +   V    +G+V  + +FG FV      DG+VH+S LS  +R  +     +
Sbjct: 350 RNPWEVFAETHPVGTPIEGEVKNITEFGLFVGLEHDIDGMVHLSDLSWDQRGEEAIQNYR 409

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   + + D D+ +I LS+K +  +T
Sbjct: 410 KGDVVKAVVTEVDTDKERISLSIKALGDDT 439



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   +    V  + D G  V +   +   +  S LS +R  +  +  + GD V V++ +
Sbjct: 447 VKRGSVITVTVTAIEDGGIEVEYNSMK-SFIRRSDLSRDRADQRPERFQVGDKVDVRVTN 505

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 506 VDAKTRRLGLSIKAREIAEEKEAV 529


>gi|126653283|ref|ZP_01725394.1| hypothetical protein BB14905_08913 [Bacillus sp. B14905]
 gi|126589957|gb|EAZ84086.1| hypothetical protein BB14905_08913 [Bacillus sp. B14905]
          Length = 145

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|302340135|ref|YP_003805341.1| Tex-like protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637320|gb|ADK82747.1| Tex-like protein [Spirochaeta smaragdinae DSM 11293]
          Length = 732

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +RS  D+ E   I  G V  +  FGAFV     +DGLVHIS L+   V   ++VV+  
Sbjct: 650 EGVRSPEDLREG-MILPGIVTNITSFGAFVDIGVHQDGLVHISHLADHFVKDPAEVVRLK 708

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V VK++  D +R +I LSMK
Sbjct: 709 QQVQVKVISVDLERRRIGLSMK 730


>gi|308270373|emb|CBX26985.1| 30S ribosomal protein S1 [uncultured Desulfobacterium sp.]
          Length = 611

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 42/236 (17%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA-MQMDMKIGGISENIMVMAL 521
            M    D ++  ++      E      D K A    G T  + +    GG S +I V A 
Sbjct: 122 VMVEWWDDEEERVILSKEKAEKVKVWDDIKKAHDSDGTTEGVILSRVKGGFSVDIGVQAF 181

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
                         S+        L E   +     I     +                 
Sbjct: 182 LPG-----------SQADLRPIRNLDELVGKTFAFKILKYNRK----------------- 213

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN-KIYKGQVVKVMDFGAFVHFC 640
                        +  S  A +E  R+  R+ T       K+ +G V  + ++G FV   
Sbjct: 214 ----------RSNVVLSRRAILEQDRDSKRTATLSSITEGKVSEGFVKNITEYGVFVDL- 262

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  DGL+HI+ +S  R+   +++   GD + VK+L  D ++ ++ L MK + ++  
Sbjct: 263 GGVDGLLHITDISWGRIKHPAEMFAVGDKIQVKILSIDKEKERVSLGMKQLVEDPW 318



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 21/198 (10%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGM 569
            ++   +   K     I   + +V+      + E  P    +      I +      I  
Sbjct: 377 EMVESVVLDIKPENRRISLGVKQVVPNPWDIISENYPVGTTIEGKVKNITDFGIFVGIDE 436

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSIT 614
           G   +  I + +  K         K      A + A                ++   +++
Sbjct: 437 GIDGLIHISDISWTKRIKHPSELYKKGDVIQAVVLAIEKENERFSLGIKQLQKDPWETVS 496

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               V K   G +  V DFG FV      +GLVH+S++S E++         GD +  K+
Sbjct: 497 TRYAVGKEIVGTITNVTDFGIFVELEEGIEGLVHVSEISKEKIKTPVGKYNVGDGITAKV 556

Query: 675 LDFDD-RGKIKLSMKVVD 691
           ++ +    +I LS+K + 
Sbjct: 557 MNINSAERRIGLSIKRLQ 574



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   S ++   +     G+VV + D+GAFV      +GL+H+S++S  R +   S +   
Sbjct: 316 DPWISASEKYPIGARVTGKVVSLTDYGAFVELEEGIEGLIHVSEMSWARKIRHPSKIFSV 375

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G+ V   +LD   +  +I L +K V  N    I
Sbjct: 376 GEMVESVVLDIKPENRRISLGVKQVVPNPWDII 408


>gi|228963338|ref|ZP_04124503.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228796366|gb|EEM43809.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 722

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   ++  F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVKQEVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|94971687|ref|YP_593735.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553737|gb|ABF43661.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
           Ellin345]
          Length = 609

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +    +RN+  + G  +   + +   K      G + ++   + E E   +  +++  +
Sbjct: 187 QVDLRPVRNLDALKGHELEVRIIKLNKKR-----GNIVVSRKQILEEEQNDKKSKTLEHL 241

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E + +  G V  + D+GAFV   G  DGL+HI+ +S  R+    D+V+ GD + VK+L 
Sbjct: 242 NE-DAVLTGTVKNLTDYGAFVDL-GGIDGLLHITDMSWGRLTHPRDLVQVGDQIQVKVLK 299

Query: 677 FD-DRGKIKLSMKVVDQNTGKP 697
           FD D+ ++ L  K +  +    
Sbjct: 300 FDRDKQRVSLGFKQLTPDPWLD 321



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              S+ +   V  + +G+V  + DFGAF+      DGLVH+S LS  +RV   S+V+K+G
Sbjct: 405 PWESLHEKFPVGGVVEGKVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKG 464

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D V   +L  + D  ++ L +K +  +  +
Sbjct: 465 DKVKAVVLAIEPDNRRLSLGVKQLQPDVWE 494



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +     ++   +     G+V+ V D+GAF+      +GLVH+S+++  +R+   S +V  
Sbjct: 317 DPWLDASERYPIGARVHGRVISVTDYGAFIELEQGIEGLVHVSEMTWSKRMKHPSKIVNV 376

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           GD V   +L+ + +  +I L +K ++ N  + +
Sbjct: 377 GDQVDAVVLNVNPQERRISLGLKQLETNPWESL 409



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++  +  +   V  I  G+V+++  FGAF+      +GL H S+ S E  A     ++ G
Sbjct: 491 DVWETFFETHRVGDIIHGKVLRLASFGAFIEIADGVEGLCHNSEASDEHGAPLK--LEPG 548

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                K++  + D  K+ LS++ V +   +
Sbjct: 549 QEFDFKIIKMNPDEKKVGLSLRAVGEEASR 578


>gi|284052606|ref|ZP_06382816.1| 30S ribosomal protein S1 [Arthrospira platensis str. Paraca]
          Length = 316

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D DRG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDADRGRISLSTKQLEPEPG 272



 Score = 37.6 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + + ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DVVPGTVFSLEPRGALIDIGAKTAAYIPLQEMSINRVESPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|218895367|ref|YP_002443778.1| S1 RNA binding domain protein [Bacillus cereus G9842]
 gi|218545174|gb|ACK97568.1| S1 RNA binding domain protein [Bacillus cereus G9842]
          Length = 722

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   ++  F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVKQEVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
 gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei]
          Length = 252

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 7/226 (3%)

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V++  +    +R+DGR     R ++ + G +    G    + G +     V  G RE   
Sbjct: 3   VIKEYINPAGLRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATV-YGPREVSN 61

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            ++                   A          SR               V+  +     
Sbjct: 62  RLEGKYNEVT--ITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNS 119

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  E+ + DGS   A +  + LAL+DA + +   V    +GL++  D    + D++ 
Sbjct: 120 QIHICIEVLKQDGSDKAACINAACLALIDASIAMKDVVYTQTVGLIEGFD----VVDLTT 175

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           +E H       +       T +        ++  ++   ++ A++ 
Sbjct: 176 EEIHSQCPSICITVQGHDPTNIVWMESNSRLAPEVITRLVKVAQKA 221



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 17/212 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT----YA 69
           R L LE G+I+   DG      G + V ATV   R + +      L   Y E T      
Sbjct: 24  RRLALEFGKISG-CDGCCTVVSGLSHVCATVYGPREVSNR-----LEGKYNEVTITCDVV 77

Query: 70  VGKIPGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKN-ETQVIINVMQHDLESSPH 127
           V    G   R + R +  +E + + ++D +   +    Y N +  + I V++ D      
Sbjct: 78  VAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGSDKA- 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA  AL+ + +  +  V    V  I G  V++   +E      S+ + V G    
Sbjct: 137 -ACINAACLALIDASIAMKDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSICITVQGHDPT 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
            ++     ++L+ +V+   +         V E
Sbjct: 196 NIVWMESNSRLAPEVITRLVKVAQKASTDVFE 227


>gi|229055085|ref|ZP_04195516.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH603]
 gi|228721269|gb|EEL72794.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH603]
          Length = 722

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 122/354 (34%), Gaps = 52/354 (14%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   +R+ F +  N       +  +V+R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQNVERDVFYIIVNEAGASVYSASDVAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNRVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                    I  +        I    ++
Sbjct: 512 VAKNIVAKREEDGKFTKRTEL------------------KKIPRLGAKTYEQCIGFLRIL 553

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
                          + + +  E    +      + +      +        G  I  + 
Sbjct: 554 EGANP---------LDRTGIHPEQYKNVELLLKSLGLSKNDVGKPNLQKSFEGVDISKLS 604

Query: 579 EQTG----AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           ++T       V+I D              +   +      +  +     +G +  V+DFG
Sbjct: 605 QETEIGEPTLVDIMDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTIRNVVDFG 664

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           AFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G++ LSM
Sbjct: 665 AFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|294084819|ref|YP_003551579.1| 30S ribosomal protein S1 [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664394|gb|ADE39495.1| Ribosomal protein S1 [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 565

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 105/247 (42%), Gaps = 25/247 (10%)

Query: 453 VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           +P+ + V+      VK GD+  +       E              +G   +  D      
Sbjct: 53  IPLKELVSPGQEADVKIGDEIEV-----YVERME---------DRNGQAVLSRDKARREE 98

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           + +++  + ++ +R    I  ++    +        F P  ++   P   +  ++G    
Sbjct: 99  AWSVLEASFEKQERVTGIIFGKVKGGFTVDLSGATAFLPGSQVDIRPVRDLGPLMGSPQP 158

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
                +++          G + ++  ++ E   A      ++++ E  ++ +G V  + D
Sbjct: 159 FQILKIDRRR--------GNIVVSRRAVLEESRAEARTELVSNLQEG-QVLQGVVKNITD 209

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV   G  DGL+H++ ++ +R++  S+ ++ G+TV V+++ F+ +  +I L MK + 
Sbjct: 210 YGAFVDL-GGVDGLLHVTDIAWQRISHPSEALQIGETVEVQVIRFNAETQRISLGMKQLL 268

Query: 692 QNTGKPI 698
            +  + +
Sbjct: 269 SDPWENV 275



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +    +G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWENVEGKFPIGAKMEGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
              V V +LD D  + +I L +K    N  + +
Sbjct: 330 SQQVEVMVLDVDLSKRRISLGLKQCTGNPWEDL 362



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEGDTVWV 672
           T  P  ++I +G++  + +FG FV      DGLVH+S +S +   + + +   +GD V  
Sbjct: 364 TAHPAGSEI-EGEIRNITEFGLFVGLTEEIDGLVHLSDISWDVTGEAALEGFNKGDMVKA 422

Query: 673 KLLDFD-DRGKIKLSMKVVDQNT 694
           K+LD D D+ +I L +K +  + 
Sbjct: 423 KVLDIDTDKERISLGIKQLTDDP 445



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++    V  V + G  V    A  G +  + LS ER  + +D    G+ V   + + D +
Sbjct: 457 EVVTCIVSAVSENGLDVTVGDAMTGFIRRADLSRERNEQRADRFAVGEKVDAVVTNLDKK 516

Query: 681 -GKIKLSMKVVDQNTGK 696
             K+ LS+K  +    K
Sbjct: 517 SRKLTLSIKARESAEEK 533


>gi|253701864|ref|YP_003023053.1| 30S ribosomal protein S1 [Geobacter sp. M21]
 gi|251776714|gb|ACT19295.1| RNA binding S1 domain protein [Geobacter sp. M21]
          Length = 400

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 11/183 (6%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
            +  A          +  E+             F P  +I     +   + IG       
Sbjct: 110 QLEEAYAAGIPVEGTVEKEVKGGFEVKVAGSRAFCPFSQIALRRVEDTASFIGKQVSFKI 169

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
               + G  +       V   +    E++  ++ ++      +V +  KG V  + DFGA
Sbjct: 170 VEYAENGRNI------VVSHRALLEEELQQQKDALKE---TLKVGQRVKGTVTSLRDFGA 220

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   GA +GL+ +S+++  RV   SDV+  G  V V +   D ++ +I  S+K    + 
Sbjct: 221 FVSI-GAVEGLLPVSEVAWARVNHVSDVLTVGQEVEVVVKGIDWEKDRISFSLKDTLADP 279

Query: 695 GKP 697
            + 
Sbjct: 280 WEE 282



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +                G+V ++  FGAFV      DGL+HIS+L + +R+    +V+ E
Sbjct: 278 DPWEEAASAFPEGSYQNGKVARLTPFGAFVTLGSGVDGLIHISKLGAGKRIQHPREVLAE 337

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           G  V VK+   D ++ +I LS+
Sbjct: 338 GQEVEVKVEGVDREQRRISLSL 359


>gi|222110591|ref|YP_002552855.1| 30S ribosomal protein s1 [Acidovorax ebreus TPSY]
 gi|221730035|gb|ACM32855.1| ribosomal protein S1 [Acidovorax ebreus TPSY]
          Length = 561

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    ++++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPVKDLTPYENKTLEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L F
Sbjct: 191 EGA-IVNGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L+ D D+ +
Sbjct: 282 GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVSLGDEVEVMVLEIDEDKRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 342 ISLGMKQCKANPWQE 356



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAQDTKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS            K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDP 440



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFVTVNDKGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAVVVNVDRKTRNIQLSIKQKD 523


>gi|163747514|ref|ZP_02154864.1| 30S ribosomal protein S1 [Oceanibulbus indolifex HEL-45]
 gi|161379192|gb|EDQ03611.1| 30S ribosomal protein S1 [Oceanibulbus indolifex HEL-45]
          Length = 558

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 167 GNIVVSRRAILEESRAEQRAEVIGNLTEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 224

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 225 DMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLGMKQLQEDPW 270



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +  ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 268 DPWDLVGAKYPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 327

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 328 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 358



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG FV   G  DG+VH+S LS  +R  +     +
Sbjct: 354 RNPWEVFAETHPEGTEVEGEVKNITEFGLFVGLPGDIDGMVHLSDLSWDQRGEEAIQDYR 413

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K V
Sbjct: 414 KGDVVQAVVSEVDVEKERISLSIKNV 439



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + + G  V + G +   +  S LS +R  +  +    G
Sbjct: 442 DKFAEAVGGVKRGSIVTVNVTSIEEGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 500

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ +S+K  +    K  V
Sbjct: 501 DKVDVRITNVDAKAHRLGVSIKAREIAEEKEAV 533


>gi|332529387|ref|ZP_08405348.1| 30S ribosomal protein S1 [Hylemonella gracilis ATCC 19624]
 gi|332041185|gb|EGI77550.1| 30S ribosomal protein S1 [Hylemonella gracilis ATCC 19624]
          Length = 559

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +     +++     K +   V +   K N      V ++  ++ E     E  + + ++ 
Sbjct: 136 VDTRPTKDLTPYENKTLEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMQNLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV+ G  +  K+L F
Sbjct: 191 EGA-IVQGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L+ D D+ +
Sbjct: 282 GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVSLGDEVEVMVLEIDEDKRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 342 ISLGMKQCKANPWQE 356



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 89/262 (33%), Gaps = 42/262 (16%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  ++    D+ G +   H+  M ++     S +     +     I+  I+ 
Sbjct: 193 AIVQGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVQAGQE-----ITAKILK 247

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  L +    P+   +      I +      +  G + 
Sbjct: 248 FDTEKNRVSL-----GLKQMGDDPWLGVSRRYPQSTRLFGKVTNIADYGAFVELEPGIEG 302

Query: 574 IRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           +  + E                        + ID+D           +        +   
Sbjct: 303 LVHVSEMDWTNKNVAPSKLVSLGDEVEVMVLEIDEDKRRISLGMKQCKAN----PWQEFA 358

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVK 673
              +     KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   
Sbjct: 359 QNTKRGDRVKGPVKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQDVEAI 418

Query: 674 LLDFD-DRGKIKLSMKVVDQNT 694
           +L  D DR +I L +K +D + 
Sbjct: 419 VLAIDVDRERISLGIKQLDGDP 440



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T + +      G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFATFTSINDKGATVTGKVKTVDARGAEIDLGEDVIGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   + + D + + I+LS++  D
Sbjct: 499 DEVTAVVTNVDRKTRNIQLSIRAKD 523


>gi|325474458|gb|EGC77645.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola F0402]
          Length = 811

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++      D   V  I  G V K  DFGAF+      +GL HIS+ S  +++ K  D++K
Sbjct: 515 QDPWLQFEDKFHVEDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKINKPEDILK 574

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L +D   G++ L +K V  N    I
Sbjct: 575 PGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTI 608



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 13/189 (6%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQ-----LGEFTPRVEIMAIPPDQIRNVI 567
              I+    +QA   +  I   ++K +           L  F P  +      ++   ++
Sbjct: 337 DRLILQKEFKQAYADKTPIDGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLV 396

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G+  K     +            G   + +          +   +     ++    KG V
Sbjct: 397 GVKSKFYIEKLSFNSRS------GENIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTV 450

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
                FGAF+   G  DGL+HI+ +S   V +  D VK+G+ + +K++  D +  +I LS
Sbjct: 451 KSFTSFGAFIDLGGF-DGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLS 509

Query: 687 MKVVDQNTG 695
           +K   Q+  
Sbjct: 510 LKHFTQDPW 518



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V      +VVK+ + GAF+      DG +H   +S  +RV      ++  
Sbjct: 604 PWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFLHADDISWIKRVKHPGSELEVD 663

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             + V +++ D +  +I+L +K +  +  +
Sbjct: 664 QEIEVIVIECDAESRRIRLGIKQLTDDPWE 693



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 24/178 (13%)

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRN-------------VIGMGGKVIRGIVEQTG 582
            +V       + E  P    +     +I N              +          V+  G
Sbjct: 598 KQVTDNPWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFLHADDISWIKRVKHPG 657

Query: 583 AKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           +++ +D +  V +                   +         +V  I +G+V  + DFG 
Sbjct: 658 SELEVDQEIEVIVIECDAESRRIRLGIKQLTDDPWEKFGAAYKVGSIVEGEVSSITDFGV 717

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFDDR-GKIKLSMKV 689
           FV   G  +GL+H   L   R     + +     GD +   +++ + R  K   S+K 
Sbjct: 718 FVKVPGDIEGLIHKQNLVESRDETPEEALAKYAVGDKIKAVVIEINPRNKKTAFSIKD 775


>gi|237733108|ref|ZP_04563589.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383790|gb|EEO33881.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 325

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D       S   A      +      +  +     +G V  V+DFGAFV      DG
Sbjct: 221 DIIDSFIKPNRSPRDAYATPLLKKDILKIEDLKPGMQLEGTVRNVVDFGAFVDIGLKNDG 280

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LVHIS++S ER+    D +  GD V V ++D D ++ ++ LSM
Sbjct: 281 LVHISKISHERIKHPLDKLSIGDIVEVYVIDVDVNKHRVGLSM 323


>gi|242280672|ref|YP_002992801.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242123566|gb|ACS81262.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 716

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 22/157 (14%)

Query: 557 AIPPDQIRNVIG----MGGKVIRGI-VEQTGAKVNIDD-----------DGTVKIASSSL 600
           A+ P++ + V G    +G  V   I   +  AK+N++D              +K      
Sbjct: 559 AVHPERYKAVAGIAKDLGADVADLIKSSELRAKINLEDYVSEDLGLPTLKDIMKELEKPG 618

Query: 601 AEIEAAREMIRSITDVPEVNK-----IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            +     E ++    V EV+      I  G V  V  FGAFV     +DGLVHIS+++ +
Sbjct: 619 RDPRKQFEAVKFDDSVKEVSDLREGMILNGIVTNVTAFGAFVDIGVHQDGLVHISRMADD 678

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            V   + VV  G  + VK+LD D  R +I LSM+  D
Sbjct: 679 FVRDPATVVHPGQALKVKVLDVDIQRKRISLSMRQSD 715


>gi|110681047|ref|YP_684054.1| 30S ribosomal protein S1 [Roseobacter denitrificans OCh 114]
 gi|109457163|gb|ABG33368.1| ribosomal protein S1 [Roseobacter denitrificans OCh 114]
          Length = 559

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 167 GNIVVSRRAILEESRAEQRAEVIGNLSEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 224

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 225 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQEDPW 270



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 268 DPWDLVAAKYPLGSTHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 327

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 328 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 358



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG FV   G  DG+VH+S LS  ER        +
Sbjct: 354 RNPWEVFAETHPEGTEVEGEVKNITEFGLFVGLDGDIDGMVHLSDLSWDERGEDAIQNYR 413

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K V
Sbjct: 414 KGDMVQAVVSEVDVEKERISLSIKGV 439



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 442 DKFAEAVGGVKRGSIVTVTVTAIEDGGVEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 500

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ +S+K  +    K  V
Sbjct: 501 DKVDVRITNVDAKSRRLGVSIKAREIAEEKEAV 533


>gi|296283442|ref|ZP_06861440.1| 30S ribosomal protein S1 [Citromicrobium bathyomarinum JL354]
          Length = 566

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I+D+ E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRAVLEETRAEQRSELISDLAEG-QVVDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV   S+V++ G TV V+++  + +  +I L MK ++ +  
Sbjct: 231 DMSYKRVNHPSEVIEIGQTVTVQIIRINAETQRISLGMKQLESDPW 276



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V     GQV  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 274 DPWDGVAAKYPVGMKLTGQVTNITEYGAFVEVEPGIEGLVHVSEMSWTKKNVHPGKIVST 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              V V +L+ D ++ +I L +K   +N  + 
Sbjct: 334 SQEVEVMVLEVDSEKRRISLGLKQAQRNPWEE 365



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 91/254 (35%), Gaps = 38/254 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S +  +   + +  I          
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIEIGQTVTVQII---------- 255

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRGI 577
           +       I   M ++ S+    +    P    +      I        +  G + +  +
Sbjct: 256 RINAETQRISLGMKQLESDPWDGVAAKYPVGMKLTGQVTNITEYGAFVEVEPGIEGLVHV 315

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +               +A R       +   +   
Sbjct: 316 SEMSWTKKNVHPGKIVSTSQEVEVMVLEVDSEKRRISLGLKQAQRNPWEEFAEAHPIGSE 375

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
            +G+V    +FG F+   G  DG+VH+S ++        D +   ++G+ V   +LD D 
Sbjct: 376 VEGEVKNATEFGLFIGLPGDVDGMVHMSDIAWG--ISGEDALALHRKGEEVKAIVLDVDI 433

Query: 679 DRGKIKLSMKVVDQ 692
           D+ +I L MK +++
Sbjct: 434 DKERISLGMKQLEK 447



 Score = 39.5 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +     V++V D G  V        G +  S L  +R  +  D  + G  +   +  FD 
Sbjct: 463 ETVTVTVLEVRDGGLEVQVGEDGATGFIKRSDLGRDRDEQRPDRFQAGQKIDAMVTGFDR 522

Query: 680 RGKIKLSMKV 689
             K   S+K 
Sbjct: 523 SKKPTFSIKA 532


>gi|239832549|ref|ZP_04680878.1| cytochrome c oxidase, subunit I [Ochrobactrum intermedium LMG 3301]
 gi|239824816|gb|EEQ96384.1| cytochrome c oxidase, subunit I [Ochrobactrum intermedium LMG 3301]
          Length = 786

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + 
Sbjct: 667 KPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKAPHEVVKAGDVVKVRVTEV 726

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I L+M+        P
Sbjct: 727 DVPRKRIGLTMRKDGGEAPAP 747


>gi|313896281|ref|ZP_07829834.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975080|gb|EFR40542.1| putative ribosomal protein S1 [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 389

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   VE    +V++     V      L    A +E        PE  +I +G V +++D+
Sbjct: 150 VDQTVEAEIIEVDVQKRRLVLSRRKLLERDRAEKEEAVFSAIEPE--QIVRGTVKRLVDY 207

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL HIS L+  RV   S+V++ G  + V +   D D  +I LS+K    
Sbjct: 208 GAFIDI-GGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSVDRDAKRISLSVKDTLP 266

Query: 693 NTG 695
           +  
Sbjct: 267 DPW 269



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +        +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  G
Sbjct: 267 DPWVEKAEQYAEGDFIEGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTG 326

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           D V VK+L  D  R +I LS+
Sbjct: 327 DIVTVKVLRIDTKRKRISLSI 347


>gi|163734569|ref|ZP_02142008.1| 30S ribosomal protein S1 [Roseobacter litoralis Och 149]
 gi|161392062|gb|EDQ16392.1| 30S ribosomal protein S1 [Roseobacter litoralis Och 149]
          Length = 559

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 167 GNIVVSRRAILEESRAEQRAEVIGNLTEGQTV-DGVVKNITEYGAFVDL-GGVDGLLHVT 224

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK + ++  
Sbjct: 225 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQEDPW 270



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 268 DPWDLVAAKYPLESTHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 327

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 328 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWE 358



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG FV   G  DG+VH+S LS  ER        +
Sbjct: 354 RNPWEVFAETHPEGTEVEGEVKNITEFGLFVGLDGDIDGMVHLSDLSWDERGEDAIQNYR 413

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K V
Sbjct: 414 KGDMVHAVVSEVDVEKERISLSIKGV 439



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I    V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 442 DKFAEAVGGVKRGSIVTVTVTAIEDGGVEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 500

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ +S+K  +    K  V
Sbjct: 501 DKVDVRITNVDAKSRRLGVSIKAREIAEEKEAV 533


>gi|114797230|ref|YP_761081.1| S1 RNA-binding domain-containing protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737404|gb|ABI75529.1| S1 RNA binding domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 771

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 562 QIRNVIGMGGKVIRGIVEQTG------AKV-NIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           ++  +IG    + +   E           + +I  +              A  +      
Sbjct: 595 KVETIIGDKAFISKLKPEDFADATFGVPTIKDILKELEKPGRDPRPEFKTATFQEGIDKV 654

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +     +G V  V  FGAFV     +DGLVHIS++S   +    D VK G  V V +
Sbjct: 655 TDLKPGMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPHDAVKTGQVVSVTV 714

Query: 675 LDFD-DRGKIKLSMKV 689
           ++ D  R +I LSMK 
Sbjct: 715 MEVDVARKRIGLSMKQ 730


>gi|295107401|emb|CBL04944.1| Transcriptional accessory protein [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 718

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 11/122 (9%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           +G+G   +R IV +      ++  G     S+              +    E+     G 
Sbjct: 602 LGVGLPTLRDIVAE------LEKPGRDPRDSAPEVVFSKGIRSFDDLVPGMEL----TGT 651

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  V+DFGAFV     +DGLVH+S+L+   V   S+VV  GDTV V +   D DRGKI L
Sbjct: 652 VRNVVDFGAFVDIGVKQDGLVHVSKLADRFVRHPSEVVAVGDTVTVWVTAVDKDRGKISL 711

Query: 686 SM 687
           SM
Sbjct: 712 SM 713


>gi|228906025|ref|ZP_04069917.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 200]
 gi|228937536|ref|ZP_04100178.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970423|ref|ZP_04131078.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228976993|ref|ZP_04137401.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis Bt407]
 gi|228782740|gb|EEM30910.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis Bt407]
 gi|228789309|gb|EEM37233.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228822147|gb|EEM68133.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228853628|gb|EEM98393.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 200]
          Length = 722

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   ++  F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVKQEVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|217077883|ref|YP_002335601.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Thermosipho africanus TCF52B]
 gi|217037738|gb|ACJ76260.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Thermosipho
           africanus TCF52B]
          Length = 811

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 12/138 (8%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           ++ +V+  G  V   I      K+   D    KI  S    +    +  +++T   +V  
Sbjct: 492 KVEDVLSEGQSVKLYI-----KKI---DKENRKILLSLKELMP---DPWQNVTKKYKVGD 540

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G+V  ++ +G +V+     DGLVHI  +   R  K SD+V  GD V V + + D + 
Sbjct: 541 IVSGKVKNILSYGFYVNLEPGVDGLVHIDDIFWGRRGKISDIVSVGDIVKVMIKEIDPNN 600

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K++LS K V+ +  + I
Sbjct: 601 KKMRLSYKEVEGDPWENI 618



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +I +++ +G  V   I E       ID +      S    E     +   +I +   V  
Sbjct: 578 KISDIVSVGDIVKVMIKE-------IDPNNKKMRLSYKEVEG----DPWENIEEKYPVGN 626

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
              G V  ++D G  V       G   IS++S   ++   DV+ EG  V   + + D   
Sbjct: 627 TITGTVSFILDKGVIVEIERGISGFCPISEISWNYISSVKDVLNEGQKVKAVITELDKEN 686

Query: 682 K-IKLSMKVVDQNTGK 696
           + ++LS+K V +N  K
Sbjct: 687 RKMRLSIKRVQENPWK 702



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E      +  +   I +G V K+  FGAFV      DGL+  S++S +   K  DV+ EG
Sbjct: 441 EQKEKFFNERKEGDIIEGIVKKIEKFGAFVRIFEGIDGLLPNSEVSYDTSLKVEDVLSEG 500

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            +V + +   D   + I LS+K +  +  + +
Sbjct: 501 QSVKLYIKKIDKENRKILLSLKELMPDPWQNV 532


>gi|229551621|ref|ZP_04440346.1| RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|258540712|ref|YP_003175211.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           Lc 705]
 gi|229315025|gb|EEN80998.1| RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|257152388|emb|CAR91360.1| RNA binding S1 domain protein [Lactobacillus rhamnosus Lc 705]
          Length = 159

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV     G+V  +  FGAFV     + GLVHIS++S   V    DV+  G+ V VK+
Sbjct: 1   MAVEVGTKVAGKVTGITKFGAFVELGDGKTGLVHISEVSDAYVKDIHDVLHVGEPVTVKV 60

Query: 675 LDFDDRGKIKLS-MKVVDQNTGKP 697
           L   D GKI LS  K VD+   + 
Sbjct: 61  LSIQD-GKIGLSIRKAVDKPQQRE 83


>gi|17227632|ref|NP_484180.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
 gi|17135114|dbj|BAB77660.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
          Length = 343

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDAPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|269123857|ref|YP_003306434.1| RNA binding S1 domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315183|gb|ACZ01557.1| RNA binding S1 domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 762

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI---YKGQVVK 629
            ++ I+E+TG      D     I        E  + ++R      E  K+    +G V  
Sbjct: 603 NLQNIIEKTGLDKTTKDVYEALIKDRRDPRDEFDKPLLREDILSIEDLKVGMELEGTVRN 662

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV      D ++HIS+LS   +   + V+  G  + V++LD D  RG++ L+ K
Sbjct: 663 VTKFGAFVDIGLKNDAMIHISELSNSFIDDPTKVLSIGQIIKVRVLDIDIQRGRVGLTRK 722

Query: 689 VVD 691
             +
Sbjct: 723 DAN 725


>gi|74316974|ref|YP_314714.1| 30S ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259]
 gi|74056469|gb|AAZ96909.1| ribosomal protein S1 [Thiobacillus denitrificans ATCC 25259]
          Length = 573

 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K++   +  V    + L E   A     ++ +  +   I KG V  + D+GAFV 
Sbjct: 164 EFKVIKLDRKRNNVVVSRRAVLEETMGA--DREALMESLKEGSIVKGVVKNITDYGAFVD 221

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             G  DGL+HI+ ++  RV   ++VV  G  +  K+L +D ++ ++ L +K +  +  
Sbjct: 222 L-GGIDGLLHITDMAWRRVKHPTEVVHVGQELEAKILRYDTEKNRVSLGLKQLGDDPW 278



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S +V+ GD V V +LD D D+ +
Sbjct: 293 GKVANLTDYGAFVEIEEGIEGLVHVSEMDWTNKNVSPSKIVQLGDEVEVMVLDIDEDKRR 352

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 353 ISLGMKQCKSNPWED 367



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+D           +               +      G +  + DFG F+   G  D
Sbjct: 344 LDIDEDKRRISLGMKQCKSN----PWEDFAMNHKKGDKVSGAIKSITDFGVFIGLPGGID 399

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS   V     V   ++G  V   +L  D +R +I L +K ++ + 
Sbjct: 400 GLVHLSDLSWS-VPGEEAVRNFRKGQDVEAVVLGIDLERERISLGIKQLEGDP 451



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + + S     E   I KG +  V   GA V      +G +  S++S +RV       KEG
Sbjct: 450 DPLTSYATGHEKGSIVKGTIKTVEAKGATVKLDSDMEGYLRASEVSRDRVEDMRSHYKEG 509

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D +   +++ D + + I LS+K  D
Sbjct: 510 DEIEAMIINVDRKNRVINLSIKAKD 534


>gi|42527583|ref|NP_972681.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola ATCC
           35405]
 gi|41818168|gb|AAS12592.1| cytidylate kinase/ribosomal protein S1 [Treponema denticola ATCC
           35405]
          Length = 811

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++      D   V  I  G V K  DFGAF+      +GL HIS+ S  +++ K  D++K
Sbjct: 515 QDPWLQFEDKFHVEDIVTGTVTKTTDFGAFIELDEGIEGLAHISEFSWVKKINKPEDILK 574

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L +D   G++ L +K V  N    I
Sbjct: 575 PGDKVTCMILGYDIQAGRVSLGLKQVTDNPWDTI 608



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 13/189 (6%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQ-----LGEFTPRVEIMAIPPDQIRNVI 567
              I+    +QA   +  I   ++K +           L  F P  +      ++   ++
Sbjct: 337 DRLILQKEFKQAYADKTPIDGTIAKQVRAGYEVKLGGGLTAFLPLSQADVSRVEKPETLV 396

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G+  K     +            G   + +          +   +     ++    KG V
Sbjct: 397 GVKSKFYIEKLSFNSRS------GENIVVNRRKYMEGRTEKERDAFFQNTKIGDTVKGTV 450

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
                FGAF+   G  DGL+HI+ +S   V +  D VK+G+ + +K++  D +  +I LS
Sbjct: 451 KSFTSFGAFIDLGGF-DGLLHINDMSWGHVTRPKDFVKKGEEIELKVIRLDPENKRINLS 509

Query: 687 MKVVDQNTG 695
           +K   Q+  
Sbjct: 510 LKHFTQDPW 518



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +I +   V      +VVK+ + GAF+      DG +H   +S  +RV      ++ G
Sbjct: 604 PWDTIEERYPVGTRLTRKVVKITNAGAFISLEEGIDGFLHADDISWIKRVKHPGSELEVG 663

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             + V +++ D +  +I+L +K +  +  +
Sbjct: 664 KEIEVIVIECDAESRRIRLGIKQLTDDPWE 693



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV--- 664
           +         +V  I +G+V  + DFG FV   G  +GL+H   L   R     + +   
Sbjct: 690 DPWEKFGAAYKVGSIVEGEVSSITDFGVFVKVPGDIEGLIHKQNLVESRDETPEEALAKY 749

Query: 665 KEGDTVWVKLLDFDDR-GKIKLSMKV 689
             GD +   +++ + R  K   S+K 
Sbjct: 750 AVGDKIKAVVIEINPRNKKTAFSIKD 775


>gi|85704359|ref|ZP_01035462.1| S1 RNA binding domain protein [Roseovarius sp. 217]
 gi|85671679|gb|EAQ26537.1| S1 RNA binding domain protein [Roseovarius sp. 217]
          Length = 781

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + 
Sbjct: 648 KSGMMMEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVTEV 707

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSM+
Sbjct: 708 DVARKRIGLSMR 719


>gi|260910080|ref|ZP_05916761.1| YhgF like protein [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635792|gb|EEX53801.1| YhgF like protein [Prevotella sp. oral taxon 472 str. F0295]
          Length = 711

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  +  FGAFV     +DGLVH+SQL+   VA  ++VVK    V VK+++ D  
Sbjct: 641 MLLPGIVTNITKFGAFVDVGVHQDGLVHVSQLANRYVADPAEVVKLHQHVQVKVVEVDTR 700

Query: 680 RGKIKLSMKVV 690
           R +I L+MK V
Sbjct: 701 RNRISLTMKGV 711


>gi|170749398|ref|YP_001755658.1| RNA-binding S1 domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655920|gb|ACB24975.1| RNA binding S1 domain protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 772

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAFV     +DGLVHIS ++  R+A  ++VV+ G+ V V +L+ 
Sbjct: 649 KPGMQLEGVVTNVAAFGAFVDIGVHQDGLVHISAMARRRIASPTEVVRIGEVVRVLVLNV 708

Query: 678 D-DRGKIKLSMKVVDQ-NTGKP 697
           D  R +I LSM++ D    G+P
Sbjct: 709 DVPRKRIALSMRLDDPVEPGQP 730


>gi|146104020|ref|XP_001469709.1| exosome complex exonuclease RRP41 [Leishmania infantum]
 gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
           JPCM5]
          Length = 246

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 80/254 (31%), Gaps = 13/254 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR     R +      L    GS     G ++       G RE     
Sbjct: 5   KEYVSPAGLRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKV-CACVFGPRESLHKQ 63

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
           ++     +            A          S+     G    +    V+  +      +
Sbjct: 64  EAKH--DKGLVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQI 121

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            I  E+ + DG+  +A V  + LAL+DA V +   V  I  G++ +     +L D++ DE
Sbjct: 122 HIYIEVLQKDGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDE----HMLIDLTNDE 177

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
                     A T      +        +  +     L+ A+ G   +           R
Sbjct: 178 LRSQCPVIAAAFTGHDTRNIIWLETASRLPPDSAARLLKCAEEGATKLFETAM------R 231

Query: 544 LQLGEFTPRVEIMA 557
             L E   ++  + 
Sbjct: 232 KALEEHAKKILTLK 245



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 13/209 (6%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           DG+   T G++ V A V   R     Q    D   +T       +A G+      RR   
Sbjct: 37  DGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVTCEVAVAAFA-GENRRNPQRRSKL 95

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             +    + ++    I  L S+   ++  + I V+Q D      +  + AA  AL+ + +
Sbjct: 96  SEDIGAAVVQVARSVI--LLSQYPNSQIHIYIEVLQKDGNEK--IACVNAACLALIDANV 151

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS---GTQDAVLMVELEANQLSEDVV 200
                V       ++   +++   DE +    +  +   G     ++    A++L  D  
Sbjct: 152 AMRDAVCCIDAGILDEHMLIDLTNDELRSQCPVIAAAFTGHDTRNIIWLETASRLPPDSA 211

Query: 201 LDAIIFGHNECKPVIE-AISKLAKMCAKE 228
              +         + E A+ K  +  AK+
Sbjct: 212 ARLLKCAEEGATKLFETAMRKALEEHAKK 240


>gi|113955395|ref|YP_729757.1| 30S ribosomal protein S1 [Synechococcus sp. CC9311]
 gi|113882746|gb|ABI47704.1| ribosomal protein S1 [Synechococcus sp. CC9311]
          Length = 305

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 177 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNV 235

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 236 NDQMKVMIIDLDAERGRISLSTKALEPEPG 265



 Score = 38.0 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV++ G+     ++ +
Sbjct: 23  KPGDIVNGTVFALETKGAMIDIGAKTAAFMPLQEVSINRVEGLSDVLQPGEIREFFIMSE 82

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 83  ENEDGQLSLSVRRIEYQRAWE 103


>gi|299536715|ref|ZP_07050025.1| hypothetical protein BFZC1_11862 [Lysinibacillus fusiformis ZC1]
 gi|298727829|gb|EFI68394.1| hypothetical protein BFZC1_11862 [Lysinibacillus fusiformis ZC1]
          Length = 142

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|85859093|ref|YP_461295.1| 30S ribosomal protein S1P [Syntrophus aciditrophicus SB]
 gi|85722184|gb|ABC77127.1| SSU ribosomal protein S1P [Syntrophus aciditrophicus SB]
          Length = 586

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +    +R++    G+ +   V +   K N      V ++  S+ E E   E   ++ ++
Sbjct: 159 QVDIRPVRDLDKYVGQTLMFDVLKYDRKRN-----NVVLSRRSILEQEREVEKQETLANI 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   + +G +  + D+G F+   G  DGL+H++ +S  R+ K S+    GD + VK+L 
Sbjct: 214 SEGV-VVEGIIKNITDYGLFIDL-GGIDGLLHVTDISWGRITKPSEAFNRGDKITVKVLS 271

Query: 677 FD-DRGKIKLSMKVVDQNTGK 696
           FD ++ ++ L +K + +N  +
Sbjct: 272 FDREKERVSLGLKQLTENPWE 292



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
               IT+   V  I +G+VV + D+GAFV      +GL+H+S++   R +   S V+  G
Sbjct: 290 PWEMITEQYPVGAIVEGKVVNLTDYGAFVELAPGVEGLIHVSEMFWTREIRHPSKVLSLG 349

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             V V +LD + +  +I L +K    N  + +
Sbjct: 350 QNVKVMILDVNKENKRISLGLKQTTDNPWETL 381



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +      I  G+V  + +FG FV      +GLVHIS+LS +RV   S++   
Sbjct: 462 KNPWEEFCEKYTAGSIVSGKVTNLTEFGIFVEVEEGIEGLVHISELSHKRVKTASEIFSI 521

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKV--VDQNTGKPI 698
           GD V   +   D +G+ I+LS+K   V+   G+ +
Sbjct: 522 GDAVSAVVKSVDVKGRKIRLSIKDTEVNPEAGRSV 556



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++        + KG +  V +FG FV      DGLVH+S +S  +RV   S++ K+G
Sbjct: 377 PWETLKQKYPEGTLIKGVIRNVTNFGIFVGVEDGIDGLVHVSDISWKQRVKHPSEIYKKG 436

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             +   +L+ D +  K  L +K +++N  + 
Sbjct: 437 QEIEAVVLNIDVESEKFSLGIKQIEKNPWEE 467



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G     + +  ++   +E+         + ++  G++V++      V      +G +  
Sbjct: 17  EGGGNQQNQNSEDMMGFKELYEQSLQSVHLGELVTGKIVQINSDMVMVDVGWKTEGYIPA 76

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            +L  E        V  GD + V +   D  G + LS 
Sbjct: 77  KELRDEEGNIA---VNVGDEIEVMVERRDQEGNLVLSR 111


>gi|313894879|ref|ZP_07828439.1| S1 RNA binding domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976560|gb|EFR42015.1| S1 RNA binding domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 148

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
             + +FGAF+     + GL+HIS+++   V    D +KE DTV VK+L  DDRGKI LS+
Sbjct: 14  TGITNFGAFIELPEGKTGLIHISEVADVYVNDVHDFLKERDTVRVKVLTVDDRGKIGLSI 73

Query: 688 KVVD 691
           K + 
Sbjct: 74  KALQ 77


>gi|116075859|ref|ZP_01473118.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
 gi|116067174|gb|EAU72929.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
          Length = 359

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 232 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNV 290

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 291 NDQMKVMIIDLDAERGRISLSTKALEPEPG 320


>gi|332308524|ref|YP_004436375.1| Tex-like protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175853|gb|AEE25107.1| Tex-like protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 776

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 20/143 (13%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------------REM 609
           + ++IG        ++++   +  +DD   +   +  + E+                +E 
Sbjct: 585 VNDLIGNT-----ELLKKLEPQQFVDDTFGLPTVTDIINELLKPGRDPRPEFKTATFKEG 639

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + S++D+ E   I +G V  V +FGAFV     +DGLVHIS ++ + ++   ++VK GD 
Sbjct: 640 VSSLSDLKEG-MILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKFISDPREIVKTGDI 698

Query: 670 VWVKLLDFD-DRGKIKLSMKVVD 691
           V VK+++ D  R ++  +M++ D
Sbjct: 699 VKVKVMEVDVARKRVSFTMRLND 721


>gi|315640571|ref|ZP_07895678.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
 gi|315483678|gb|EFU74167.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
          Length = 404

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + I+  +  + ++  ++ E E   +    +  + E +++ +G V ++ +FGAFV   G  
Sbjct: 171 IEIEPSENRLILSHKAVVEAEKEDKKAELLASIKEGDQL-EGNVARLTNFGAFVDL-GGI 228

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           DGLVH+S++S   V K SDV+  GDTV V +L  D    +I LS+K         I
Sbjct: 229 DGLVHVSEISHGHVGKPSDVLAVGDTVNVAVLSIDPTTERISLSIKDTLPGPWDNI 284



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I +  +V    +G V ++  FGAFV      +GLVHISQ+S + +A   +V+ EGD
Sbjct: 280 PWDNIEEKAQVGATLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGD 339

Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690
           TV VK+L+ +    +I LS+K +
Sbjct: 340 TVQVKVLEVNPTDHRIALSIKAL 362



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
           ++ +  +  + E   +      V  + KG+V+ V D  A V   G   +G+V + +LST 
Sbjct: 6   NNQVENVNVSMEDALNSFKEVSVGDVVKGEVLAVEDKQAIVGIEGAGVEGVVPVKELSTL 65

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIK----LSMKVVD 691
            V   +++VK GD + + ++    + K      LS + +D
Sbjct: 66  PVEDINELVKIGDVLDLVVISTIGKDKENGSYLLSKRRLD 105


>gi|224010385|ref|XP_002294150.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970167|gb|EED88505.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 303

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 17/110 (15%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVV 664
            R   R     PE+  I++G V ++  +G FV        GLVHISQL   +V   +DVV
Sbjct: 23  HRIQQRQRFQPPELYSIHRGSVSRIEPYGCFVKLHTTPLSGLVHISQLHNTKVENVNDVV 82

Query: 665 KEGDTVWVKLLDFD----------------DRGKIKLSMKVVDQNTGKPI 698
              D VWVK++D                   R K+KLSMK V+Q+ G+ +
Sbjct: 83  SLEDEVWVKVMDVQVEQIEGSGEDGGGFTRQRHKVKLSMKYVNQDNGEDL 132


>gi|193215725|ref|YP_001996924.1| RNA binding S1 domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089202|gb|ACF14477.1| RNA binding S1 domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 758

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 575 RGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           + + E+ G    ++I ++              A         +  ++    +G V  V D
Sbjct: 599 KYVTEEVGEPTLIDILNELEKPGRDPREEFRYAEFSDAVKAMEDLQIGMKLEGVVTNVTD 658

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S+L+   V+   + VK G  V V++LD +    +I LSM+  D
Sbjct: 659 FGAFVDIGVHQDGLVHVSELADNYVSDPLEAVKVGQIVTVRVLDVNLSLRRISLSMRSED 718


>gi|221124380|ref|XP_002163382.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 874

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +  S  A +EA+    R+      +   + +G V  + ++GAFV   G  DGL+
Sbjct: 476 DRKRNNVVLSRRAVVEASMGEERAKLMHTLKEGSVVQGVVKNITEYGAFVDL-GGIDGLL 534

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           HI+ ++  RV   S+VV  G  +  K+L FD ++ ++ L +K +  +  
Sbjct: 535 HITDMAWRRVRHPSEVVTAGQEITAKILKFDTEKNRVSLGLKQMGDDPW 583



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L+ D D+ +
Sbjct: 598 GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKIVALGDEVEVMVLEIDEDKRR 657

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 658 ISLGMKQCKANPWQE 672



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 649 LEIDEDKRRISLGMKQCKAN----PWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGID 704

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +T+    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 705 GLVHLSDLSWNESGETAVREFKKGQEVEAIVLAVDVDRERISLGIKQLDSDP 756



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 755 DPFTTFVSVNDKGQTVTGKVKTVDAKGAEIDLGDDILGYLRASEISRDRVEDARNVLKEG 814

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 815 DEVTAVVVNVDRKTRNIQLSIKAKD 839


>gi|116873734|ref|YP_850515.1| general stress protein 13 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742612|emb|CAK21736.1| S1 RNA binding domain protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 117

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
           nagariensis]
 gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
           nagariensis]
          Length = 238

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 14/237 (5%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
             R DGR  E  R +  +  +L +  GS+    G T+ +V V  G R+ E     L  T 
Sbjct: 11  GCRADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGV-FGPRQSEVK---LGFTD 66

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                        A+ ++++ G     E    +  ++A+ P +           + + I 
Sbjct: 67  TGRLNCEVRLTSFASHKLAKSGQTQL-ESSAAQGLQQALEPSVQLDKFPKAVFDVSAMIL 125

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED--HLGH 488
           E+ GS     +  +S+AL DAGV +   V  + +         ++L D S +E     G 
Sbjct: 126 EAGGSDLAVLITAASVALADAGVELYDLVPAVQVSK----QRGLLLLDPSLEESGAEEGG 181

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           M   +    + +TA+ +       +++ M   L+ A  G   +   M + L  + ++
Sbjct: 182 MLVGLMPELNEVTALNVRGL---WADSEMQEGLELALGGCGQLKAAMREALLTAAVE 235



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 34/224 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R + ++T R+  Q+ G+    +G T V+  V   R  +    F     L    +  ++A 
Sbjct: 23  RTVFIKT-RVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNCEVRLTSFAS 81

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV 128
            K+       +S  T+ E   ++ + +++ P     K  K    V   +++    S   V
Sbjct: 82  HKLA------KSGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMILEA-GGSDLAV 134

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDA--VL 186
           + + AAS AL  +G+     V   QV    G  +L+P L+E         SG ++   ++
Sbjct: 135 L-ITAASVALADAGVELYDLVPAVQVSKQRGLLLLDPSLEE---------SGAEEGGMLV 184

Query: 187 MVELEANQLS---------EDVVLDAIIFGHNECKPVIEAISKL 221
            +  E N+++         +  + + +      C  +  A+ + 
Sbjct: 185 GLMPELNEVTALNVRGLWADSEMQEGLELALGGCGQLKAAMREA 228


>gi|212697109|ref|ZP_03305237.1| hypothetical protein ANHYDRO_01675 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675884|gb|EEB35491.1| hypothetical protein ANHYDRO_01675 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 695

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D+             E   +      D  +   + +G V  + +FG FV      DG
Sbjct: 588 DIIDELKKPGRDPRDELPEVITKSEVLSIDDLKEGDVLEGTVRNITEFGCFVDIGVGIDG 647

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           LVHIS +S + +   +++V   D + VK+++ D  R +I LSMK + +
Sbjct: 648 LVHISNMSDKFIKDPNEIVTNSDIIKVKVIEIDKKRERIGLSMKNIKE 695


>gi|7190413|gb|AAF39231.1| ribosomal protein S1 [Chlamydia muridarum Nigg]
          Length = 536

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N+D    V      L            + + 
Sbjct: 129 QIDNKKIKNLDDYVGKVCEFKI----LKINVDRRNVVVSRRELLEA--ERISKKAELIEQ 182

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  KG V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L 
Sbjct: 183 ITIGERRKGIVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILS 241

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D ++G++ L +K  + N  + I
Sbjct: 242 VDKEKGRVALGLKQKEHNPWEDI 264



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 13/208 (6%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
            I  + +D +   +S   ++ A + +K+  L     + +        + +F   +++  I
Sbjct: 149 KILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGI 208

Query: 559 P-----PDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEAAREMIRS 612
                  D     I    +++    E     +++D + G V +                 
Sbjct: 209 DGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHN-----PWED 263

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW 671
           I       K  +G++VK++ +GAF+      +GL+H+S++S  + +   ++VV +GD V 
Sbjct: 264 IEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVE 323

Query: 672 VKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           V +L    D GKI L +K  + N    I
Sbjct: 324 VVVLSIQKDEGKISLGLKQTEHNPWDNI 351



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  ++++  +S +     + 
Sbjct: 191 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 250

Query: 523 QAKRGRLH----ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              + + H     + +        R ++ +  P    + I  + I  +I +        +
Sbjct: 251 LGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-EEGIEGLIHVSEMSWVKNI 309

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVM 631
                 VN  D+  V + S    E + +  + ++  +  +  +           ++  + 
Sbjct: 310 VDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLT 369

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GL+HIS +S  ++V+  S++ K+G+TV   +L  D +  KI L +K 
Sbjct: 370 NYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQ 429

Query: 690 VDQNTGKPI 698
           +  N    I
Sbjct: 430 LTPNPWDEI 438



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  D++  G
Sbjct: 434 PWDEIEAMFPVGSDI-SGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIG 492

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 493 DKVSAKVIKLDPDHKKVSLSIKE 515



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    I    E   I KGQ+ + +  G  V      +  +
Sbjct: 72  DEEGKVVLS---REKATRQRQ-WEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEAFL 125

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + DR  + +S + + +
Sbjct: 126 PGSQIDNKKIKNLDDYV--GKVCEFKILKINVDRRNVVVSRRELLE 169


>gi|257871354|ref|ZP_05651007.1| S1 RNA-binding domain-containing protein [Enterococcus gallinarum
           EG2]
 gi|257805518|gb|EEV34340.1| S1 RNA-binding domain-containing protein [Enterococcus gallinarum
           EG2]
          Length = 160

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            I+  +          EV    KG+V  + +FGAF+     + GLVHIS++S   V    
Sbjct: 1   MIKWVKIRRNIFYMSIEVGAKLKGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIH 60

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
           DV+  GD V V +    + GKI LS++  +    +
Sbjct: 61  DVLSIGDEVTVVVTAIGNDGKIGLSIRKAEAKPEE 95


>gi|320538386|ref|ZP_08038261.1| S1 RNA binding domain protein [Treponema phagedenis F0421]
 gi|320144771|gb|EFW36512.1| S1 RNA binding domain protein [Treponema phagedenis F0421]
          Length = 800

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 13/129 (10%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVN 620
           +I+    +G + I  I+E+             K       +          +T    +  
Sbjct: 597 KIKTDYNIGEQTINDIIEELK-----------KPNRDPREDCPKPIMQQGVLTFEDLKTG 645

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              KG++  V+DFGAFV        L+HIS++S   ++   + VK GD V  K++  D D
Sbjct: 646 MTVKGKIKNVVDFGAFVDLGIKETALLHISEMSDSFISDPLEAVKVGDIVECKIIALDED 705

Query: 680 RGKIKLSMK 688
           R +I LS K
Sbjct: 706 RRRISLSRK 714


>gi|225552212|ref|ZP_03773152.1| 30S ribosomal protein S1 [Borrelia sp. SV1]
 gi|225371210|gb|EEH00640.1| 30S ribosomal protein S1 [Borrelia sp. SV1]
          Length = 430

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G
Sbjct: 261 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLG 320

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
             V VK+L+ D    KI L +K V++N  + +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQVNENPWEKL 352



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWEKLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVV 690
            V  K+L+ D R + ++L +K +
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQL 430


>gi|218295918|ref|ZP_03496698.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
 gi|218243656|gb|EED10184.1| RNA binding S1 domain protein [Thermus aquaticus Y51MC23]
          Length = 530

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           +    KV      +L      +    +   +I N+    G+ +   + +   K      G
Sbjct: 127 VTVKEKVKGGVVAELDSVRAFIPASQLDLRRIPNLDAYVGQQLLVKIIEFHRK-----KG 181

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E  ++   +     E  ++ +G VV V DFGAFV+     DGLVH S+
Sbjct: 182 RVLLSRRAVLE-EEQKKAKEAFFQSLEPGQVVEGTVVDVTDFGAFVNLGP-VDGLVHRSE 239

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           ++  R     +V+ +G  V  +++  D ++ ++ LS+K +  +  
Sbjct: 240 ITWGRFNHPREVLHKGQKVRAQVVSVDPEKERVNLSIKALIPDPW 284



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ +   V    +G+VV +  FGAFV      +GL+HIS+LS  +R    S+VVKE
Sbjct: 282 DPWSTVAEKYPVGTRVRGKVVGLTHFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKE 341

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           GD V   +L  D    ++ L +K    +  + +V
Sbjct: 342 GDEVEAVVLRLDPAERRLSLGLKQTQPDPWQQLV 375



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + + +      + KG++  V DFG FV      +GLVH+S+L   RV   + + K+G
Sbjct: 369 DPWQQLVEKYPPGTVVKGKITGVTDFGVFVELEPGMEGLVHVSELDHIRVENPAALFKKG 428

Query: 668 DTVWVKLLDFDD-RGKIKLS 686
           D + V +L+ D    +I LS
Sbjct: 429 DEMEVVVLNIDPVEQRISLS 448



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 602 EIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK- 659
            +E A +   +         ++  G+VV V   G  V      +G++  +QL+ + ++  
Sbjct: 14  SMEEALQETEARLEKRVRPGQVLTGKVVFVGSEGVAVDIGAKTEGIIPFNQLTEKPLSDE 73

Query: 660 -TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
               ++K GD V V++L  D + G+I LS K V+
Sbjct: 74  ELKGLLKPGDEVRVQVLKVDPETGQILLSRKKVE 107



 Score = 43.7 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E    I ++ E  +     V + +  G        R   +  SQL   R+      V
Sbjct: 107 EATEHWDRIQELYEKGEPVTVTVKEKVKGGVVAELDSVR-AFIPASQLDLRRIPNLDAYV 165

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  + VK+++F   +G++ LS + V +   K
Sbjct: 166 --GQQLLVKIIEFHRKKGRVLLSRRAVLEEEQK 196


>gi|110597804|ref|ZP_01386087.1| RNA binding S1 [Chlorobium ferrooxidans DSM 13031]
 gi|110340529|gb|EAT59012.1| RNA binding S1 [Chlorobium ferrooxidans DSM 13031]
          Length = 596

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G+ +    E     +NID D T    S          +   ++++    N ++KG 
Sbjct: 340 IKHPGQFVTLGQEVECVILNIDKDHTKLSLSMKRVN----EDPWIALSEKYIENSLHKGT 395

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIK 684
           V  + DFG FV      DGLVHIS LS  +++   S++VK+   + VK+L FD    +I 
Sbjct: 396 VSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFDVHARRIA 455

Query: 685 LSMKVVDQNTGKP 697
           L  K ++Q+    
Sbjct: 456 LGHKQINQDPWDE 468



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +I     V    +G+VV + D+GAFV      +GLVHIS++S  + +      V  
Sbjct: 290 HPWENIELKYPVGSKAQGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTL 349

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V   +L+ D D  K+ LSMK V+++  
Sbjct: 350 GQEVECVILNIDKDHTKLSLSMKRVNEDPW 379



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV     + V ++ F
Sbjct: 215 KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVGF 273

Query: 678 DDR-GKIKLSMKVVDQNTGKPI 698
           D+   ++ L MK ++ +  + I
Sbjct: 274 DENTKRVSLGMKQLESHPWENI 295



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G++ ++++ G  V   G  DG V +S L    V       K GD + +++++FD +  +I
Sbjct: 481 GEISQIIEKGVIVILPGDVDGFVPVSHLLQGGVKDIHSSFKIGDGLPLRVIEFDKENKRI 540

Query: 684 KLS 686
            LS
Sbjct: 541 ILS 543



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
            +K+ +   A   A  E + S T +    ++I KG++V + +    +      +G+V + 
Sbjct: 20  KIKVFAHYEAAELAQMEQLYSSTLNEITEDEIVKGRIVSISNKDVTIDVGFKSEGIVSLL 79

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           +   +      D VK GD V V L +  D  G++ LS K  D
Sbjct: 80  EFRDD------DEVKVGDDVEVYLENIEDKMGQLILSKKKAD 115


>gi|294656765|ref|XP_459081.2| DEHA2D13882p [Debaryomyces hansenii CBS767]
 gi|199431726|emb|CAG87249.2| DEHA2D13882p [Debaryomyces hansenii]
          Length = 1147

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 27/269 (10%)

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDI--SGDEDHLGHMDFKVAGTDSGITAMQM 505
           + D G P+   ++ +    +   D    LS    S  E      +        G   +  
Sbjct: 5   IRDKGKPLDGQLSELVTKHLGVSDKDFTLSKFVTSLYEQSATRNNVNRNSRLGGFIDVLK 64

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN 565
               G   +  +            H+  +   + +    + G  +   + + I PD+   
Sbjct: 65  SNGAGDFPQEFVDEIFSLIDEYLYHVPVKEEPIDNVPNNRQGTDSKVFKSLNI-PDKPVR 123

Query: 566 VIGMGGKV-IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
                     + I ++       +D  T                      +  E   +YK
Sbjct: 124 WTEEDFANEYKDISKE-------EDTNTKVDVKLERNHNGNHERRYTVKDEPIEAGNVYK 176

Query: 625 GQVVKVMDFGAFVHFCG---ARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKLLDFD 678
           G V  +  +GAF+        + GL H+SQ+S     R+   SDV+K    ++VK+L  +
Sbjct: 177 GYVSNITTYGAFIRLNDPKSFQSGLCHVSQISFDGRTRIQNPSDVLKLNQEIFVKVLSIE 236

Query: 679 ----------DRGKIKLSMKVVDQNTGKP 697
                      R KI LSM+ +DQ TG  
Sbjct: 237 KPTSQVGRRLPREKISLSMRGIDQATGLD 265


>gi|297564598|ref|YP_003683570.1| RNA binding S1 domain-containing protein [Meiothermus silvanus DSM
           9946]
 gi|296849047|gb|ADH62062.1| RNA binding S1 domain protein [Meiothermus silvanus DSM 9946]
          Length = 598

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +S+ D        KG+V  + DFG FV      +GL+HIS+L   RV K SD+ K+G
Sbjct: 416 DPWKSLPDRYPPGTPVKGKVTGLTDFGVFVEIEPGIEGLIHISELDYSRVEKPSDLFKKG 475

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVV 690
           D V   +L+ D    +I LS K +
Sbjct: 476 DEVEAVILNIDPVEQRISLSRKRL 499



 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++      I S      E  + +   +    + + + +GQVV+V +FG FV   G  D
Sbjct: 221 IELNRKKGRVILSRRAVVEEEQKSLRAKLLSQLKPDDVVEGQVVEVTEFGVFVAL-GGVD 279

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GLVH S+++  R     +V+++G TV  K+L  D +R ++ LS+K +  +  
Sbjct: 280 GLVHRSEITWGRFTHPKEVIQKGQTVRAKVLSVDPERERVNLSIKALVSDPW 331



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++++   +    +G+VV +  FGAFV      +GL+HIS+LS  +R    S+VVKE
Sbjct: 329 DPWLTVSEKYPIGSRVQGKVVGLTPFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKE 388

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           G  V   +L  D    ++ L ++    +  K +
Sbjct: 389 GQEVEAVVLRIDPTERRLSLGLRQTQPDPWKSL 421



 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 596 ASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           A S    +E A +   +      +  +I +G VV V   G  V      +G++  +QLS 
Sbjct: 55  APSGGNLMEQALQDAEARLEKTVQRGQILQGTVVFVGHEGVAVDIGARTEGIIPFNQLSE 114

Query: 655 ERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           E +   +   ++K GDTV V ++  D + G+I LS K  + +
Sbjct: 115 ENLPEEELKKLLKPGDTVTVYVVRADLENGQIILSKKRAETD 156



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTS 661
           +   E  RS   + E+    +  +V V +   G  V F       +  SQ+  +R  +  
Sbjct: 150 KKRAETDRSWVKIQELFDRAEPVMVTVKEKVKGGLVAFVEGVRAFLPASQVDLKRTPELD 209

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + V  G +  VK+++ +  +G++ LS + V +   K +
Sbjct: 210 EYV--GQSFPVKIIELNRKKGRVILSRRAVVEEEQKSL 245


>gi|332981388|ref|YP_004462829.1| RNA binding S1 domain-containing protein [Mahella australiensis
           50-1 BON]
 gi|332699066|gb|AEE96007.1| RNA binding S1 domain protein [Mahella australiensis 50-1 BON]
          Length = 130

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V  I  G V  +  FGAF+       GLVHIS+++   VA   D +KE D V VK+
Sbjct: 1   MTLQVGNIVDGTVSGITKFGAFIKLPDGSTGLVHISEIADFYVADIKDQLKENDRVRVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNT 694
           L   D GKI+LS+K   Q  
Sbjct: 61  LSIGDDGKIRLSIKKAKQPE 80


>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton equinum CBS 127.97]
          Length = 302

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G    E      +G    
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVH-GPA--EGKRSETAGAAGA 71

Query: 373 DFMMHYNFLPCATGEVSRM-----GAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +  N    A  +  +      G   R+         R A  P +        T+ + 
Sbjct: 72  VINVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVH 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 132 VSVLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGM 171



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA-VGKIPGGYLRRE 81
           S G+   + G T VL TV      K  +        + V      +A V +         
Sbjct: 37  SSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLAGFANVDRKKKSTTGSG 96

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
               +    ++  +  + +P        ++   V ++V+  D   S     + A + AL+
Sbjct: 97  GGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDG--SLFAACLNACTLALV 154

Query: 140 LSGLPFEGPVVGAQVDY 156
            +G+P  G +    V  
Sbjct: 155 DAGIPMPGLLCACTVGM 171


>gi|229165226|ref|ZP_04293018.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH621]
 gi|228618258|gb|EEK75291.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH621]
          Length = 722

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 122/354 (34%), Gaps = 52/354 (14%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   +R+ F +  N       +  +V+R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQNVERDVFYIIVNEAGASVYSASDVAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNRVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                    I  +        I    ++
Sbjct: 512 VAKNIVAKREEDGKFTKRTEL------------------KKIPRLGAKTYEQCIGFLRIL 553

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
                          + + +  E    +      + +      +        G  I  + 
Sbjct: 554 EGANP---------LDRTGIHPEQYKNVELLLKSLGLSKNDVGKPNLQKSFEGVDISKLS 604

Query: 579 EQTG----AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           ++T       V+I D              +   +      +  +     +G +  V+DFG
Sbjct: 605 QETEIGEPTLVDIMDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTIRNVVDFG 664

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           AFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G++ LSM
Sbjct: 665 AFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|229009745|ref|ZP_04166968.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides DSM 2048]
 gi|228751540|gb|EEM01343.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides DSM 2048]
          Length = 722

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 122/354 (34%), Gaps = 52/354 (14%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   +R+ F +  N       +  +V+R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQNVERDVFYIIVNEAGASVYSASDVAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNRVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                    I  +        I    ++
Sbjct: 512 VAKNIVAKREEDGKFTKRTEL------------------KKIPRLGAKTYEQCIGFLRIL 553

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
                          + + +  E    +      + +      +        G  I  + 
Sbjct: 554 EGANP---------LDRTGIHPEQYKNVELLLKSLGLSKNDVGKPNLQKSFEGVDISKLS 604

Query: 579 EQTG----AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           ++T       V+I D              +   +      +  +     +G +  V+DFG
Sbjct: 605 QETEIGEPTLVDIMDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTIRNVVDFG 664

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           AFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G++ LSM
Sbjct: 665 AFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|163938245|ref|YP_001643129.1| RNA-binding S1 domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131249|ref|ZP_04260155.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST196]
 gi|163860442|gb|ABY41501.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228652240|gb|EEL08171.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST196]
          Length = 722

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 122/354 (34%), Gaps = 52/354 (14%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   +R+ F +  N       +  +V+R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQNVERDVFYIIVNEAGASVYSASDVAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNRVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                    I  +        I    ++
Sbjct: 512 VAKNIVAKREEDGKFTKRTEL------------------KKIPRLGAKTYEQCIGFLRIL 553

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
                          + + +  E    +      + +      +        G  I  + 
Sbjct: 554 EGANP---------LDRTGIHPEQYKNVELLLKSLGLSKNDVGKPNLQKSFEGVDISKLS 604

Query: 579 EQTG----AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           ++T       V+I D              +   +      +  +     +G +  V+DFG
Sbjct: 605 QETEIGEPTLVDIMDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTIRNVVDFG 664

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           AFV     +DGLVHIS+LS + V    D+V  G  V V + D D  +G++ LSM
Sbjct: 665 AFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|260574087|ref|ZP_05842092.1| ribosomal protein S1 [Rhodobacter sp. SW2]
 gi|259023553|gb|EEW26844.1| ribosomal protein S1 [Rhodobacter sp. SW2]
          Length = 560

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   I  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLTEGQSI-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + D  +I L MK +  +  
Sbjct: 227 DMAWRRVNHPSEILAIGETVKVQVIKINKDTHRISLGMKQLQSDPW 272



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     ++ ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDAVETAYPLHSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDSAKRRVSLGLKQTQRNPWE 360



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I A+   +K+  I          
Sbjct: 202 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILAIGETVKVQVI---------- 251

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
           +  +    I   M ++ S+    +    P   +       I +      +  G + +  +
Sbjct: 252 KINKDTHRISLGMKQLQSDPWDAVETAYPLHSVHKGRVTNITDYGAFVELEPGVEGLVHV 311

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +                  R       +   V   
Sbjct: 312 SEMSWTKKNVHPGKIVSTSQEVDVMVLEIDSAKRRVSLGLKQTQRNPWEVFAENHPVGSS 371

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G+V  + +FG F+      DG+VH+S LS  +R        ++GDTV   + + D ++
Sbjct: 372 IEGEVKNITEFGLFIGLDNDIDGMVHLSDLSWDQRGEDAIQNYRKGDTVKAAVTEVDVEK 431

Query: 681 GKIKLSMKVVDQNT 694
            +I LS+K +  +T
Sbjct: 432 ERISLSVKALGDDT 445



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   +    V  + + G  V + G +   +  S LS +R  +  +  + GD V  ++ +
Sbjct: 453 VKRGSVITCNVTAIEEGGIEVDYNGMK-AFIRRSDLSRDRADQRPERFQVGDKVDARVTN 511

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 512 VDSKTRRLGLSIKAKEIAEEKEAV 535


>gi|212703705|ref|ZP_03311833.1| hypothetical protein DESPIG_01752 [Desulfovibrio piger ATCC 29098]
 gi|212672857|gb|EEB33340.1| hypothetical protein DESPIG_01752 [Desulfovibrio piger ATCC 29098]
          Length = 574

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G+V  ++D+GAFV      +GLVHIS++S  R +   S +V  GD V V +L  D ++ 
Sbjct: 299 TGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKK 358

Query: 682 KIKLSMKVVDQNTGK 696
           +I L MK V  N  +
Sbjct: 359 RISLGMKQVRPNPWE 373



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    +  +  + HI+  +    +     +  F P   +   P   +  ++       
Sbjct: 114 DQLEDVQENNRVIKGHIVRRIKGGYTVDIGGVEAFLPGSHVDLRPVPDMDALV------- 166

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E   ++      T   E  +I  G+   + ++G
Sbjct: 167 NQEFEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLRT--LEEGQIVHGKAKNITEYG 224

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S +R+    +++  G  + +K+L FD +  K+ L +K +  +
Sbjct: 225 VFVDL-GGLDGLLHITDMSWKRIRHPKEMITMGQDLTLKVLSFDRENNKVSLGLKQLVPD 283

Query: 694 TGKPI 698
             + I
Sbjct: 284 PWQDI 288



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
             KG V  + DFG FV      +GLVH+S+LS++++   +++ KEG  +  K++    + 
Sbjct: 471 TVKGVVTNITDFGLFVEVEEGIEGLVHVSELSSKKIKSPAELYKEGQEIQAKVIHVSAEE 530

Query: 681 GKIKLSMKVV--DQNTGKP 697
            ++ LS+K +  D++  KP
Sbjct: 531 RRLGLSIKQIKDDEDRRKP 549



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 94/255 (36%), Gaps = 34/255 (13%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G  K+  ++ +  D+ G +   H+  M +K       +  M  D+ +  +S +       
Sbjct: 215 GKAKNITEYGVFVDLGGLDGLLHITDMSWKRIRHPKEMITMGQDLTLKVLSFD------- 267

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGI 577
              R    +   + +++ +    +    P           + +      +  G + +  I
Sbjct: 268 ---RENNKVSLGLKQLVPDPWQDISARFPEGAKCTGKVTNLVDYGAFVELEPGVEGLVHI 324

Query: 578 VEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREM-------IRSITDVPEVNKI 622
            E +  +        V+  D+  V I      +   +  M          + +      I
Sbjct: 325 SEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKRISLGMKQVRPNPWELVAEKYPEGTI 384

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            +G +  + +FG F+      DGL+H+S +S  ++V   +++ K GDTV  K+L  D + 
Sbjct: 385 LEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNEIYKVGDTVQAKVLTVDQEN 444

Query: 681 GKIKLSMKVVDQNTG 695
            K  L +K +  +  
Sbjct: 445 EKFTLGIKQLVDDPW 459


>gi|148241514|ref|YP_001226671.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
 gi|147849824|emb|CAK27318.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
          Length = 367

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 241 RALVERKMNRLEVGEVVLGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNV 299

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 300 NDQMKVMIIDLDAERGRISLSTKALEPEPG 329



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   +  G V  +   GA +         + + ++S  RV    DV++ G+T    +L +
Sbjct: 87  KPGDVVNGTVFNLEPKGALIDIGAKTAAFMPLPEVSINRVETLEDVLEPGETREFFILSE 146

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 147 ENEDGQLSLSIRRIEYQRAWE 167


>gi|16801530|ref|NP_471798.1| general stress protein 13 [Listeria innocua Clip11262]
 gi|16414990|emb|CAC97695.1| lin2468 [Listeria innocua Clip11262]
          Length = 117

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|310819429|ref|YP_003951787.1| s1 RNA binding domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392501|gb|ADO69960.1| S1 RNA binding domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 778

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 13/181 (7%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD-QIRNVIGMGGKVIR------ 575
           +        L        ++     E  P VE MA     ++ +++G G  V +      
Sbjct: 538 KTFEQAAGFLRVRGPEPLDASAVHPERYPVVERMAKDLGVEVESLVGNGALVKKIDPKRY 597

Query: 576 ---GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
               + E T    +I  +               A        +  +   + +G V  V  
Sbjct: 598 LGGDLGEMTLQ--DILSELEKPSRDPRGDFTALALREDLKTLEDVKEGMVLQGVVTNVTA 655

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVH+SQLST  V   S+V K GD + VK+L  D  R ++ LS++ V 
Sbjct: 656 FGAFVDVGVHQDGLVHVSQLSTRVVKDPSEVAKVGDRLTVKVLSVDLARKRLALSVRAVQ 715

Query: 692 Q 692
           +
Sbjct: 716 E 716


>gi|313622601|gb|EFR92991.1| general stress protein 13 [Listeria innocua FSL J1-023]
          Length = 117

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|331092592|ref|ZP_08341411.1| hypothetical protein HMPREF9477_02054 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400603|gb|EGG80217.1| hypothetical protein HMPREF9477_02054 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 718

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 14/135 (10%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVP 617
              ++ N + +G   ++ I+++             K       E+               
Sbjct: 594 DEKKLANELEVGEITLKDIIKELE-----------KPGRDPRDEMPKPILRTDVLEMKDL 642

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLD 676
               + KG V  V+DFG FV     +DGLVHISQ+   + +    +VV  GD V VK++ 
Sbjct: 643 TEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKHPLEVVSVGDIVDVKVMS 702

Query: 677 FD-DRGKIKLSMKVV 690
            D  + +I+L+MK +
Sbjct: 703 VDVKKKRIQLTMKGI 717


>gi|317124602|ref|YP_004098714.1| Tex-like protein [Intrasporangium calvum DSM 43043]
 gi|315588690|gb|ADU47987.1| Tex-like protein [Intrasporangium calvum DSM 43043]
          Length = 804

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V  V  FGAF+     +DGL H+S LS   V+   +VVK GD V  K+LD D  
Sbjct: 661 MTLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSHRFVSDPREVVKPGDVVTCKVLDVDLV 720

Query: 680 RGKIKLSMKVVDQ 692
           R +I LS+++ D+
Sbjct: 721 RKRISLSLRLDDE 733


>gi|124515665|gb|EAY57174.1| ribosomal protein S1 [Leptospirillum rubarum]
          Length = 475

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P  +I   P   +  +IG   + I+  + +   K      G + ++   L E   
Sbjct: 35  LKAFLPGSQIDLRPVRDMDRLIG---QTIQVRIIKMNKKR-----GNIIVSRRVLLEEWR 86

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R    ++  + E  +I +G V  + D+GAF+   G  DGL+HI+ +S  RV    + + 
Sbjct: 87  DRRKKVTMDALKEG-EILEGIVKNITDYGAFIDL-GGIDGLLHITDMSWGRVTNPQEFMN 144

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD V V +L  D + G++ L +K +  +  
Sbjct: 145 VGDKVNVVVLKHDKETGRVSLGLKQLTPDPW 175



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWV 672
           T  PE  ++   +VV + D+GAF+      +GL+H++++S    V   S ++  GDT+ V
Sbjct: 180 TRYPEGTRV-NARVVSITDYGAFLEIEPGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEV 238

Query: 673 KLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++L  D++ + I L +K +  N    +
Sbjct: 239 QVLKIDEKNRKISLGLKQLGPNPWDDV 265



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               +     V  +  G++  + DFGAFV      DGL+HIS +S  + V   S+V K+G
Sbjct: 261 PWDDVEGKYPVGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKKG 320

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             V V +L  + +R ++ L  K V ++  
Sbjct: 321 QKVEVVVLKIEKERQRLSLGFKQVSEDPW 349



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             G V KVMDFG FV      +GLVH+S++  E   +   V + G ++ V+++  D    
Sbjct: 363 LDGVVTKVMDFGFFVELAEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAER 422

Query: 682 KIKLSMKVVDQNT 694
           KI LSMK V  ++
Sbjct: 423 KIGLSMKAVSADS 435


>gi|325270442|ref|ZP_08137046.1| YhgF like protein [Prevotella multiformis DSM 16608]
 gi|324987238|gb|EGC19217.1| YhgF like protein [Prevotella multiformis DSM 16608]
          Length = 728

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 19/141 (13%)

Query: 571 GKVIRGIVEQTGAKVNID------DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           G  I+ ++  +G + NI       D   +      L E+E      R   +  E +K   
Sbjct: 588 GCTIKELIASSGLRRNIRLDRYVTDRIGLPSLKDILGELEKPGRDPRGAVEAFEFDKNVH 647

Query: 625 ------------GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                       G V  + DFGAFV     +DGLVHIS+L+   VA  + VV+    V V
Sbjct: 648 TPGDLTVGMELPGIVTNITDFGAFVDIGVHQDGLVHISRLADRFVADPTQVVRLHQHVRV 707

Query: 673 KLLDFD-DRGKIKLSMKVVDQ 692
           ++++ D  R +I LSMK + Q
Sbjct: 708 RVVEVDMRRKRIGLSMKNIKQ 728


>gi|332702711|ref|ZP_08422799.1| ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay]
 gi|332552860|gb|EGJ49904.1| ribosomal protein S1 [Desulfovibrio africanus str. Walvis Bay]
          Length = 590

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    +  K     I+  +    +     +  F P   +   P   +  ++G      
Sbjct: 119 DKLEDVQEGDKTISGRIMRRVKGGYTVDLGGVEAFLPGSHVDLRPVPDMDALVGKD---- 174

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E      M + + +     ++  G+V  + ++G
Sbjct: 175 ---YEFRVLKINRRRSNVIVSRRVLLEEQRE--HMRKELLETLSEGQVVTGKVKNITEYG 229

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S  R+    ++V  GD + +K+L FD D  K+ L +K +  +
Sbjct: 230 VFVDL-GGLDGLLHITDMSWRRIRHPKEMVGLGDELELKVLSFDKDNKKVSLGLKQLVPD 288

Query: 694 TGKPI 698
             + I
Sbjct: 289 PWEDI 293



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +    IT         KG+V  ++D+G+FV      +GLVHIS++S  R +   S +V  
Sbjct: 288 DPWEDITKKYPEGARLKGRVTNLVDYGSFVELEPGVEGLVHISEMSWTRKLRHPSQMVHP 347

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD V V +L  D D+ +I L MK +  N  
Sbjct: 348 GDEVEVVVLGVDPDKKRISLGMKQIKPNPW 377



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    +     V    KG V  + DFG FV      +GLVH+S++S ++V   +++ KEG
Sbjct: 462 DPWNEVPGKYPVGATVKGIVTNITDFGLFVEVEEGIEGLVHVSEISHKKVKNPAELFKEG 521

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVV 690
             +  K++    D+R ++ LS+K +
Sbjct: 522 VEIEAKVIHVSADER-RLGLSIKQL 545



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 36/262 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           +  G VK+  ++ +  D+ G +   H+  M ++       +  +  ++++  +S +    
Sbjct: 217 VVTGKVKNITEYGVFVDLGGLDGLLHITDMSWRRIRHPKEMVGLGDELELKVLSFD---- 272

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 +    +   + +++ +    + +  P    +      + +      +  G + +
Sbjct: 273 ------KDNKKVSLGLKQLVPDPWEDITKKYPEGARLKGRVTNLVDYGSFVELEPGVEGL 326

Query: 575 RGIVEQTGAK--------VNIDDDGTV--------KIASSSLAEIEAAREMIRSITDVPE 618
             I E +  +        V+  D+  V        K   S   +              PE
Sbjct: 327 VHISEMSWTRKLRHPSQMVHPGDEVEVVVLGVDPDKKRISLGMKQIKPNPWDLVAEKYPE 386

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677
              I +G +  + +FG F+      DGL+H+S +S  +++    ++ K  DTV  K+L  
Sbjct: 387 G-TILEGTIKNITEFGLFIGIEDGIDGLIHVSDISWTKKIRHPGEMYKVSDTVQAKVLTV 445

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K  L +K ++++    +
Sbjct: 446 DKENEKFTLGVKQLNEDPWNEV 467


>gi|290894206|ref|ZP_06557176.1| general stress protein [Listeria monocytogenes FSL J2-071]
 gi|290556269|gb|EFD89813.1| general stress protein [Listeria monocytogenes FSL J2-071]
 gi|313607130|gb|EFR83632.1| general stress protein 13 [Listeria monocytogenes FSL F2-208]
          Length = 117

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|298492501|ref|YP_003722678.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
 gi|298234419|gb|ADI65555.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
          Length = 341

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDSPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|229083532|ref|ZP_04215870.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-44]
 gi|228699786|gb|EEL52433.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-44]
          Length = 722

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I D              +   +      +  +     +G V  V+DFGAFV     +D
Sbjct: 615 IDIIDSLISPERDMRDELPKPLLKKGILKLEDLKRAMELEGTVRNVVDFGAFVDIGVKQD 674

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           GLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 675 GLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDVDMKKGRVALSM 718


>gi|222152742|ref|YP_002561919.1| transcription accessory protein [Streptococcus uberis 0140J]
 gi|222113555|emb|CAR41362.1| putative transcription accessory protein [Streptococcus uberis
           0140J]
          Length = 710

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 15/144 (10%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMI 610
            ++ + IP  Q+ + IG+G + ++ I++       ++ DD    +    + +++      
Sbjct: 579 VLKSVQIP--QMASQIGLGEETLKDIIKDLLKPGRDLRDDFQAPVLRQDILDLK------ 630

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD V
Sbjct: 631 -----DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVLSVGDLV 685

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQN 693
            V +   D DR K+ LS+   +++
Sbjct: 686 TVWVSKIDLDRHKVNLSLLAPNES 709


>gi|199598788|ref|ZP_03212200.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|258509512|ref|YP_003172263.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           GG]
 gi|199590293|gb|EDY98387.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|257149439|emb|CAR88412.1| RNA binding S1 domain protein [Lactobacillus rhamnosus GG]
 gi|259650780|dbj|BAI42942.1| RNA binding protein [Lactobacillus rhamnosus GG]
          Length = 159

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E+     G+V  +  FGAFV     + GLVHIS++S   V    DV+  G+ V VK+
Sbjct: 1   MAVEIGTKVAGKVTGITKFGAFVELGDGKTGLVHISEVSDAYVKDIHDVLHVGEPVTVKV 60

Query: 675 LDFDDRGKIKLS-MKVVDQNTGKP 697
           L   D GKI LS  K VD+   + 
Sbjct: 61  LSIQD-GKIGLSIRKAVDKPQQRE 83


>gi|157693559|ref|YP_001488021.1| general stress protein 13 [Bacillus pumilus SAFR-032]
 gi|157682317|gb|ABV63461.1| possible RNA-binding protein [Bacillus pumilus SAFR-032]
          Length = 130

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MATKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQV 60

Query: 673 KLLDFDDR-GKIKLSMKVVDQNTGK 696
           K+L  D+  GKI LS++       +
Sbjct: 61  KVLSVDENAGKISLSIRATQDAPER 85


>gi|89069005|ref|ZP_01156386.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
 gi|89045374|gb|EAR51439.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
          Length = 561

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLHEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 227 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQDDPW 272



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++T    ++ ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDTVTVKYPLDSVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D+ + ++ L +K   +N  +
Sbjct: 330 SQEVEVMVLEIDEAKRRVSLGLKQTMRNPWE 360



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV-- 664
           R       +        +G+V  + +FG FV   G  DG+VH+S L+ E   +  DV+  
Sbjct: 356 RNPWEVFAETHPEGTEVEGEVKNITEFGLFVGLEGDIDGMVHLSDLTWE--GRGEDVIGD 413

Query: 665 -KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            ++GD V  K+L+ D D+ +I LS+K +D + 
Sbjct: 414 YRKGDVVKAKVLEVDTDKERISLSIKALDGDP 445



 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   +    V K+ D G  V + G +   +  S LS +R  +  +  + G
Sbjct: 444 DPFAEAVGGVKRGSVITVNVTKIEDGGIEVEYEGMK-SFIRRSDLSRDRSEQRPERFQPG 502

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D +  ++ LS+K  +    K  V
Sbjct: 503 DKVDVRVTNIDPKTRRLGLSIKAREIAEEKEAV 535


>gi|326576450|gb|EGE26358.1| RNA binding protein S1 [Moraxella catarrhalis CO72]
          Length = 788

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V  FG FV     +DGLVHIS+LS   V   +DVVK  D V V+++  
Sbjct: 657 KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKPQDIVTVRVISV 716

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I  SMK
Sbjct: 717 DEVRGRIGFSMK 728


>gi|229188513|ref|ZP_04315557.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 10876]
 gi|228594976|gb|EEK52751.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus ATCC 10876]
          Length = 722

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|16804407|ref|NP_465892.1| general stress protein 13 [Listeria monocytogenes EGD-e]
 gi|47094388|ref|ZP_00232080.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47095848|ref|ZP_00233452.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224500611|ref|ZP_03668960.1| general stress protein 13 [Listeria monocytogenes Finland 1988]
 gi|224503741|ref|ZP_03672048.1| general stress protein 13 [Listeria monocytogenes FSL R2-561]
 gi|254826370|ref|ZP_05231371.1| general stress protein [Listeria monocytogenes FSL J1-194]
 gi|254829566|ref|ZP_05234253.1| general stress protein [Listeria monocytogenes FSL N3-165]
 gi|254831207|ref|ZP_05235862.1| general stress protein 13 [Listeria monocytogenes 10403S]
 gi|254854480|ref|ZP_05243828.1| general stress protein [Listeria monocytogenes FSL R2-503]
 gi|254901169|ref|ZP_05261093.1| general stress protein 13 [Listeria monocytogenes J0161]
 gi|254914044|ref|ZP_05264056.1| general stress protein 13 [Listeria monocytogenes J2818]
 gi|254933426|ref|ZP_05266785.1| general stress protein [Listeria monocytogenes HPB2262]
 gi|254938359|ref|ZP_05270056.1| general stress protein [Listeria monocytogenes F6900]
 gi|254992405|ref|ZP_05274595.1| general stress protein 13 [Listeria monocytogenes FSL J2-064]
 gi|255026257|ref|ZP_05298243.1| general stress protein 13 [Listeria monocytogenes FSL J2-003]
 gi|255030044|ref|ZP_05301995.1| general stress protein 13 [Listeria monocytogenes LO28]
 gi|255521504|ref|ZP_05388741.1| general stress protein 13 [Listeria monocytogenes FSL J1-175]
 gi|284802811|ref|YP_003414676.1| general stress protein 13 [Listeria monocytogenes 08-5578]
 gi|284995953|ref|YP_003417721.1| general stress protein 13 [Listeria monocytogenes 08-5923]
 gi|300766249|ref|ZP_07076212.1| hypothetical protein LMHG_11314 [Listeria monocytogenes FSL N1-017]
 gi|16411857|emb|CAD00447.1| lmo2369 [Listeria monocytogenes EGD-e]
 gi|47015725|gb|EAL06654.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47017240|gb|EAL08081.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|258601981|gb|EEW15306.1| general stress protein [Listeria monocytogenes FSL N3-165]
 gi|258607881|gb|EEW20489.1| general stress protein [Listeria monocytogenes FSL R2-503]
 gi|258610972|gb|EEW23580.1| general stress protein [Listeria monocytogenes F6900]
 gi|284058373|gb|ADB69314.1| general stress protein 13 [Listeria monocytogenes 08-5578]
 gi|284061420|gb|ADB72359.1| general stress protein 13 [Listeria monocytogenes 08-5923]
 gi|293584987|gb|EFF97019.1| general stress protein [Listeria monocytogenes HPB2262]
 gi|293592063|gb|EFG00398.1| general stress protein 13 [Listeria monocytogenes J2818]
 gi|293595610|gb|EFG03371.1| general stress protein [Listeria monocytogenes FSL J1-194]
 gi|300513065|gb|EFK40149.1| hypothetical protein LMHG_11314 [Listeria monocytogenes FSL N1-017]
 gi|328465354|gb|EGF36605.1| general stress protein 13 [Listeria monocytogenes 1816]
 gi|328471538|gb|EGF42423.1| general stress protein 13 [Listeria monocytogenes 220]
          Length = 117

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|163791057|ref|ZP_02185478.1| hypothetical protein CAT7_12105 [Carnobacterium sp. AT7]
 gi|159873702|gb|EDP67785.1| hypothetical protein CAT7_12105 [Carnobacterium sp. AT7]
          Length = 162

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G V  + +FGAF+     + GLVHIS++S   +    +V+K G+ V VK++  
Sbjct: 4   EVGEKVTGTVSGITNFGAFIDLGDRKTGLVHISEVSDSFIKDIKEVLKVGEQVTVKVMSI 63

Query: 678 DDRGKIKLS-MKVVDQN 693
            D GKI LS  + VD+ 
Sbjct: 64  GDDGKIGLSIRRAVDKP 80


>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
 gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
          Length = 269

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 4/160 (2%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R +SAQ+     + GSS    G+T  +  V  G  E ++   +    
Sbjct: 12  TKLRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVH-GPAEGKRGDATGGAA 70

Query: 370 QRNDFMMHY--NFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                ++    N    A  +  R  G   R+      + R A    L        T+ I 
Sbjct: 71  GSAGAIVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A V   +LAL+DAG+P+   ++    G+
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLSACTSGM 170



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 16/140 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD--------GQDFFPLTVNYQERTYAVGKIPGGYL 78
           S G+   + G T ++ +V      K         G     + V+     +A         
Sbjct: 37  SSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAIVEVDVNVAGFA----GVDRK 92

Query: 79  RRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           RR          I+ ++  + +          +   + ++V+  D   S    ++ A + 
Sbjct: 93  RRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSSDG--SLLAAAVNACTL 150

Query: 137 ALMLSGLPFEGPVVGAQVDY 156
           AL+ +G+P  G +       
Sbjct: 151 ALVDAGIPMPGLLSACTSGM 170


>gi|46908540|ref|YP_014929.1| general stress protein 13 [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224919|ref|YP_002759026.1| general stress protein 13 containing a ribosomal S1 protein domain
           [Listeria monocytogenes Clip81459]
 gi|46881812|gb|AAT05106.1| S1 RNA binding domain protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|225877381|emb|CAS06095.1| Putative general stress protein 13 containing a ribosomal S1
           protein domain [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 117

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|315283451|ref|ZP_07871637.1| general stress protein 13 [Listeria marthii FSL S4-120]
 gi|313612904|gb|EFR86860.1| general stress protein 13 [Listeria marthii FSL S4-120]
          Length = 117

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|153855030|ref|ZP_01996243.1| hypothetical protein DORLON_02249 [Dorea longicatena DSM 13814]
 gi|149752527|gb|EDM62458.1| hypothetical protein DORLON_02249 [Dorea longicatena DSM 13814]
          Length = 718

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVW 671
                +   I KG V  V+DFG FV     +DGLVHIS++   + +    +VV  GD V 
Sbjct: 638 DMKDLKEGMILKGTVRNVIDFGVFVDIGVHQDGLVHISEITDKKFIKHPLEVVSVGDIVD 697

Query: 672 VKLLDFD-DRGKIKLSMKVV 690
           VK++  D  + +I+L+MK +
Sbjct: 698 VKVMSVDLKKKRIQLTMKGI 717


>gi|15618235|ref|NP_224520.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae CWL029]
 gi|15835850|ref|NP_300374.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae J138]
 gi|16752723|ref|NP_444990.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|33241660|ref|NP_876601.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
 gi|6707741|sp|Q9Z8M3|RS1_CHLPN RecName: Full=30S ribosomal protein S1
 gi|4376592|gb|AAD18464.1| S1 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
 gi|7189364|gb|AAF38281.1| ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|8978689|dbj|BAA98525.1| S1 ribosomal protein [Chlamydophila pneumoniae J138]
 gi|33236169|gb|AAP98258.1| ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
          Length = 580

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N++      I  S    +EA R   ++    
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVE---RRNIVVSRRELLEAERISKKAELIE 215

Query: 617 PEVNKIYK-GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 Y+ G V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L
Sbjct: 216 QISIGEYRKGVVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIIL 274

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             D ++G++ L +K  + N  + I
Sbjct: 275 SVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           +        I       K   G++VK++ +GAF+      +GL+HIS++S  + +   S+
Sbjct: 289 QKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNIVDPSE 348

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           VV +GD V   +L    D GKI L +K  ++N    I
Sbjct: 349 VVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNI 385



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 30/256 (11%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  +         ++++++ 
Sbjct: 225 GVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQE-------LEVIILSVD 277

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRV--EIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + K      L +      E   +      RV  +I+ + P      I  G + +  I E 
Sbjct: 278 KEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEIEEGIEGLIHISEM 337

Query: 581 TGAKVNIDDDGTVKIASSSLAEI----------------EAAREMIRSITDVPEVNKIYK 624
           +  K NI D   V      +  I                +  R    +I +   +     
Sbjct: 338 SWVK-NIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYPIGLHVN 396

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G++V   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K +  N    I
Sbjct: 457 ITLGVKQLSSNPWNEI 472



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I  +     +  G V K+  FGAFV      +GL+H+S+LS +  AK  D++  G+
Sbjct: 468 PWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIHVSELSDKPFAKIEDIISIGE 527

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
            V  K++  D D  K+ LS+K 
Sbjct: 528 NVSAKVIKLDPDHKKVSLSVKE 549



 Score = 41.1 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    I    E   I KGQ+ + +  G  V      +  +
Sbjct: 106 DEEGKVVLS---REKATRQRQ-WEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + +R  I +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINVERRNIVVSRRELLE 203


>gi|15924466|ref|NP_372000.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927057|ref|NP_374590.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315]
 gi|148267960|ref|YP_001246903.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH9]
 gi|150394024|ref|YP_001316699.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus JH1]
 gi|156979795|ref|YP_001442054.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315983|ref|ZP_04839196.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006262|ref|ZP_05144863.2| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795469|ref|ZP_05644448.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781]
 gi|258413277|ref|ZP_05681553.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763]
 gi|258420616|ref|ZP_05683558.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258426811|ref|ZP_05688031.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299]
 gi|258447357|ref|ZP_05695501.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300]
 gi|258449758|ref|ZP_05697859.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224]
 gi|258454572|ref|ZP_05702536.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|269203101|ref|YP_003282370.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98]
 gi|282928004|ref|ZP_06335613.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102]
 gi|295407225|ref|ZP_06817025.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819]
 gi|296275327|ref|ZP_06857834.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MR1]
 gi|297244649|ref|ZP_06928532.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796]
 gi|81705665|sp|Q7A5J0|RS1_STAAN RecName: Full=30S ribosomal protein S1
 gi|81781569|sp|Q99U14|RS1_STAAM RecName: Full=30S ribosomal protein S1
 gi|13701275|dbj|BAB42569.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus N315]
 gi|14247247|dbj|BAB57638.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741029|gb|ABQ49327.1| SSU ribosomal protein S1P [Staphylococcus aureus subsp. aureus JH9]
 gi|149946476|gb|ABR52412.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156721930|dbj|BAF78347.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789441|gb|EEV27781.1| 30S ribosomal protein S1 [Staphylococcus aureus A9781]
 gi|257839841|gb|EEV64309.1| 30S ribosomal protein S1 [Staphylococcus aureus A9763]
 gi|257843564|gb|EEV67971.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257849972|gb|EEV73930.1| SSU ribosomal protein S1P [Staphylococcus aureus A9299]
 gi|257853548|gb|EEV76507.1| 30S ribosomal protein S1 [Staphylococcus aureus A6300]
 gi|257857006|gb|EEV79906.1| SSU ribosomal protein S1P [Staphylococcus aureus A6224]
 gi|257862955|gb|EEV85719.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262075391|gb|ACY11364.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ED98]
 gi|282590301|gb|EFB95381.1| 30S ribosomal protein S1 [Staphylococcus aureus A10102]
 gi|285817156|gb|ADC37643.1| SSU ribosomal protein S1p [Staphylococcus aureus 04-02981]
 gi|294967938|gb|EFG43967.1| 30S ribosomal protein S1 [Staphylococcus aureus A8819]
 gi|297178679|gb|EFH37925.1| 30S ribosomal protein S1 [Staphylococcus aureus A8796]
 gi|312829866|emb|CBX34708.1| 30S ribosomal protein S1 homolog [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129192|gb|EFT85187.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727548|gb|EGG64004.1| putative ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21172]
          Length = 391

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIHGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|326577921|gb|EGE27785.1| RNA binding protein S1 [Moraxella catarrhalis O35E]
          Length = 788

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V  FG FV     +DGLVHIS+LS   V   +DVVK  D V V+++  
Sbjct: 657 KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKPQDIVTVRVISV 716

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I  SMK
Sbjct: 717 DEVRGRIGFSMK 728


>gi|326561800|gb|EGE12135.1| RNA binding protein S1 [Moraxella catarrhalis 7169]
 gi|326564763|gb|EGE14976.1| RNA binding protein S1 [Moraxella catarrhalis 12P80B1]
 gi|326568974|gb|EGE19043.1| RNA binding protein S1 [Moraxella catarrhalis BC1]
          Length = 788

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V  FG FV     +DGLVHIS+LS   V   +DVVK  D V V+++  
Sbjct: 657 KVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVTNPADVVKPQDIVTVRVISV 716

Query: 678 DD-RGKIKLSMK 688
           D+ RG+I  SMK
Sbjct: 717 DEVRGRIGFSMK 728


>gi|269303190|gb|ACZ33290.1| ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
          Length = 580

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I   +I+N+    GKV    +     K+N++      +  S    +EA R   ++    
Sbjct: 163 QIDNKKIKNLDDYVGKVCEFKI----LKINVE---RRNVVVSRRELLEAERISKKAELIE 215

Query: 617 PEVNKIYK-GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 Y+ G V  + DFG F+      DGL+HI+ ++ +R+   S++V+    + V +L
Sbjct: 216 QISIGEYRKGVVKNITDFGVFLDL-DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIIL 274

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
             D ++G++ L +K  + N  + I
Sbjct: 275 SVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           +        I       K   G++VK++ +GAF+      +GL+H+S++S  + +   S+
Sbjct: 289 QKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEIEEGIEGLIHVSEMSWVKNIVDPSE 348

Query: 663 VVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           VV +GD V   +L    D GKI L +K  + N    I
Sbjct: 349 VVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNI 385



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I  +     +  G V K+  FGAFV      +GL+H+S+LS +  AK  D++  G+
Sbjct: 468 PWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIHVSELSDKPFAKIEDIISIGE 527

Query: 669 TVWVKLLDFD-DRGKIKLSMKV 689
            V  K++  D D  K+ LS+K 
Sbjct: 528 NVSAKVIKLDPDHKKVSLSVKE 549



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 102/256 (39%), Gaps = 30/256 (11%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  DF +  D+ G +   H+  M +K     S +  +  +         ++++++ 
Sbjct: 225 GVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQE-------LEVIILSVD 277

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRV--EIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
           + K      L +      E   +      RV  +I+ + P      I  G + +  + E 
Sbjct: 278 KEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEIEEGIEGLIHVSEM 337

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-------------PEVNKI---YK 624
           +  K NI D   V      +  I  + +       +              E   I     
Sbjct: 338 SWVK-NIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVN 396

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            ++  + ++GAFV      +GL+HIS +S  ++V+  S++ K+G++V   +L  D +  K
Sbjct: 397 AEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKK 456

Query: 683 IKLSMKVVDQNTGKPI 698
           I L +K +  N    I
Sbjct: 457 ITLGVKQLSSNPWNEI 472



 Score = 39.5 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D++G V ++     +    R+    I    E   I KGQ+ + +  G  V      +  +
Sbjct: 106 DEEGKVVLS---REKATRQRQ-WEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEAFL 159

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             SQ+  +++    D V  G     K+L  + +R  + +S + + +
Sbjct: 160 PGSQIDNKKIKNLDDYV--GKVCEFKILKINVERRNVVVSRRELLE 203


>gi|255022764|ref|ZP_05294750.1| general stress protein 13 [Listeria monocytogenes FSL J1-208]
          Length = 117

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNT-GKPI 698
           D ++ KI LS++  ++    +PI
Sbjct: 65  DEEKNKISLSIRATEEAPKEQPI 87


>gi|82751072|ref|YP_416813.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122]
 gi|82656603|emb|CAI81027.1| 30S ribosomal protein S1 [Staphylococcus aureus RF122]
          Length = 391

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
             + +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NESDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTRHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|323339401|ref|ZP_08079684.1| YhgF like protein [Lactobacillus ruminis ATCC 25644]
 gi|323093166|gb|EFZ35755.1| YhgF like protein [Lactobacillus ruminis ATCC 25644]
          Length = 727

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
             +L       ++    P    N  G G + +  IVE              K        
Sbjct: 586 NAELSTKAGLEKLSCFDPQAFANKTGAGVQTVEDIVESLK-----------KPGRDLRDS 634

Query: 603 IEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           ++    R  +  + D+ E  K+ +G V  V+DFGAFV     +DGLVH+S+L    V   
Sbjct: 635 MQKPLLRSDVLHLEDLKEGMKL-QGTVRNVVDFGAFVDIGVKQDGLVHVSKLKKGFVKNP 693

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           SDVV  GD V V +   D+ RG+I+L+M
Sbjct: 694 SDVVSVGDIVDVWIDSVDEKRGRIQLTM 721


>gi|167759788|ref|ZP_02431915.1| hypothetical protein CLOSCI_02151 [Clostridium scindens ATCC 35704]
 gi|167662407|gb|EDS06537.1| hypothetical protein CLOSCI_02151 [Clostridium scindens ATCC 35704]
          Length = 717

 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD- 678
            I KG V  V+DFG FV     +DGLVHIS++   + +    +VV  GD V VK+L  D 
Sbjct: 646 MILKGTVRNVIDFGVFVDIGVHQDGLVHISEITDKKFIKHPLEVVSVGDIVDVKVLSVDL 705

Query: 679 DRGKIKLSMKVV 690
            + +I+L+MK +
Sbjct: 706 KKKRIQLTMKGI 717


>gi|308178439|ref|YP_003917845.1| transcriptional accessory protein [Arthrobacter arilaitensis Re117]
 gi|307745902|emb|CBT76874.1| putative transcriptional accessory protein [Arthrobacter
           arilaitensis Re117]
          Length = 809

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 575 RGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + EQ G     ++  +            + A  +             I +G V  V  
Sbjct: 620 EFVTEQFGEPTIRDVIAELRRPARDPRGEFVTATLKEGVETIKDVMPGMIMEGTVSNVAA 679

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           FGAFV     +DGL+H+S +S + ++   ++V  G  V VK+L+ D  R +I L++++ D
Sbjct: 680 FGAFVDLGVHQDGLIHVSAMSNKFISDPREMVSSGQIVKVKVLEVDTVRKRISLTLRLDD 739

Query: 692 Q 692
           +
Sbjct: 740 E 740


>gi|148244694|ref|YP_001219388.1| 30S ribosomal protein S1 [Candidatus Vesicomyosocius okutanii HA]
 gi|146326521|dbj|BAF61664.1| 30S ribosomal protein S1 [Candidatus Vesicomyosocius okutanii HA]
          Length = 559

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 17/197 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG----- 571
           M          R  +L E +    E+ L+  E    +E +          + +GG     
Sbjct: 159 MDEVRNNIVISRKAVLQEANSADREALLEELEEGKEIEGIVKNLADYGAFVDLGGVDGLL 218

Query: 572 ---KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNK 621
               +    V     K+ I D   VK+ +    ++  +            SI+D   + K
Sbjct: 219 HITDISWQRVNHPSEKLTIGDKIIVKVLNYDKEKMRVSLGLKQLTVSPWDSISDRLPIGK 278

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDD- 679
             +G V  + D+GAF+      +GLVH+S++      A+ S +VK G  V V +LD  + 
Sbjct: 279 KVQGTVSNLTDYGAFLSIEEGVEGLVHVSEMDWTNANARPSKIVKLGQEVEVVVLDVQES 338

Query: 680 RGKIKLSMKVVDQNTGK 696
           + +I LSMK   +N  +
Sbjct: 339 KHRISLSMKQAQENPWE 355



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +++   + G+ I  IV +        D+    I  S  A ++ A    R      
Sbjct: 136 VDVRPVKDFSYLTGQEIEAIVIKM-------DEVRNNIVISRKAVLQEANSADREALLEE 188

Query: 618 EVNKIYK-GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                   G V  + D+GAFV   G  DGL+HI+ +S +RV   S+ +  GD + VK+L+
Sbjct: 189 LEEGKEIEGIVKNLADYGAFVDL-GGVDGLLHITDISWQRVNHPSEKLTIGDKIIVKVLN 247

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           +D ++ ++ L +K +  +    I
Sbjct: 248 YDKEKMRVSLGLKQLTVSPWDSI 270



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
             +A      S             +V  + DFG FV   G  DGL+H++ +S E   ++S
Sbjct: 346 MKQAQENPWESFEATHNKGDKIPVRVKSITDFGLFVGLLGGIDGLIHLADISWE--KQSS 403

Query: 662 DVV----KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D +     +G  + V +L+ D ++ +I L +K + ++ 
Sbjct: 404 DQLVSSYSKGQELEVVILNIDAEKERISLGIKQLLEDE 441



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I +G V++V   GA +       G +   ++S +RV   + ++K G
Sbjct: 440 DEFMRYASANKKGSIVRGMVMEVDSRGAVIRLNEDITGYLKAGEISEDRVEDATLILKTG 499

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           + + V +L+ D R + I +S+K  +    K
Sbjct: 500 EEIEVAILNIDRRTRNILVSIKAKNSVEEK 529


>gi|313159195|gb|EFR58568.1| ribosomal protein S1 [Alistipes sp. HGB5]
          Length = 630

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V    + +     A++ +  I   
Sbjct: 176 QIDVKPIRDY----DVYVDKTMEFKVVKINQEFRNVVVSHKALIEAELEAQKQV--IMSK 229

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV    ++V     + V +LD
Sbjct: 230 LEKGQILEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVNHPEEIVALDQKIQVVILD 288

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
           FDD + +I L +K +  +  + +
Sbjct: 289 FDDAKKRIALGLKQLTAHPWEAL 311



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V      +V    +FG FV      DGL+HIS LS  ++V    +    
Sbjct: 393 DPWENIETKYPVGTKCTAKVRNFTNFGIFVEIEEGIDGLIHISDLSWTKKVKHPGEFTSV 452

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 453 GADIEVVVLEIDKENRRLSLGHKQLEENPW 482



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAFV      +GL+H+S++S  + +    + +K 
Sbjct: 306 HPWEALDQNLKVGDKVKGRVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMKV 365

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  K+ L +K +  +  + I
Sbjct: 366 GDEVEAVILTLDREERKMSLGIKQLTPDPWENI 398



 Score = 44.1 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +   V+ I++G + ++ D GA V      +G     QL+ E         K GD
Sbjct: 481 PWNEFENQFSVDSIHEGTITEMTDKGAVVALGENIEGFCPARQLTKEDGTTP----KAGD 536

Query: 669 TVWVKLLDFDD-RGKIKLS 686
            +  K+++F     +I LS
Sbjct: 537 KLDFKVIEFSKATKRITLS 555



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +  + + S    EI  A +   S  +   V ++ +G V  +      V+     +G++ +
Sbjct: 38  ENDLGVYSQPKEEIAEAYDKTLSNVN---VGEVVEGTVTGITKREVLVNIGYKSEGVIPV 94

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQ 692
           S+            +  GD + V +    D  G++ LS K   Q
Sbjct: 95  SEFRY----NPD--LAVGDKIEVYVESAEDKNGQLALSHKKARQ 132


>gi|30018504|ref|NP_830135.1| transcription accessory protein [Bacillus cereus ATCC 14579]
 gi|29894044|gb|AAP07336.1| Transcription accessory protein (S1 RNA binding domain) [Bacillus
           cereus ATCC 14579]
          Length = 724

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 394 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 453

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 454 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 513

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 514 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 567

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 568 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 620

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 621 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 670

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 671 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 720


>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
          Length = 252

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 7/226 (3%)

Query: 302 VVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
           V++  +    +R+DGR     R ++ + G +    G    + G +     V  G RE   
Sbjct: 3   VIKEYINPAGLRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATV-YGPREVSN 61

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
            +D                   A          SR               V+  +     
Sbjct: 62  RLDGKYNEVT--ITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNS 119

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I  E+ + DGS   A +  + LAL+DA + +   V    +GL++  D    + D++ 
Sbjct: 120 QIHICIEVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFD----VVDLTT 175

Query: 482 DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
           +E H       +       T +        ++  ++   ++ A++ 
Sbjct: 176 EEIHSQCPSICITVQGHDPTNIVWMESNSRLAPEVITRLVKVAQKA 221



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 82/212 (38%), Gaps = 17/212 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQD----FFPLTVNYQERTYA 69
           R L LE G+I+   DG      G + V ATV   R + +  D       +T +     +A
Sbjct: 24  RRLALEFGKISG-CDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTITCDVVVAAFA 82

Query: 70  VGKIPGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKN-ETQVIINVMQHDLESSPH 127
             +      R + R +  +E + + ++D +   +    Y N +  + I V++ D      
Sbjct: 83  GER-----RREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGSDKA- 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA  AL+ + +     V    V  I G  V++   +E      S+ + V G    
Sbjct: 137 -ACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSICITVQGHDPT 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
            ++     ++L+ +V+   +         V E
Sbjct: 196 NIVWMESNSRLAPEVITRLVKVAQKASTDVFE 227


>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
           98AG31]
          Length = 271

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 89/240 (37%), Gaps = 17/240 (7%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQR----THGSSLFIRGDTQAIVVVTLGTRE-- 358
            ++    +R D R    +R +  +  +L+       GSS+   G T+    V+ G +E  
Sbjct: 5   EILSSAGLRQDNRRPYELRQLDFK--ILKSSPNSLDGSSIVSHGLTKVTSSVS-GPKEIT 61

Query: 359 ---DEQYVDSLSGTQR--NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
                 +  +L           ++ N    +  +  ++    +R +      +     V+
Sbjct: 62  SSSSSNHKSNLKSHTNNVGSIQVYVNMTNFSQSDRKKLSKVDKRLMDLSFSIQNTFESVI 121

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
                    + I  E+ + DG    A +  +SL+L+ +G+ I   +  I++G + + +  
Sbjct: 122 MLKLYPRSLIEIFIEVLQEDGGLLQAAINATSLSLIASGISIQDYILAISIGSLSNPN-- 179

Query: 474 IILSDISGDED-HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + L D++  E   L  +        S I+ +Q++ ++       +     +A       L
Sbjct: 180 LPLLDVTNLEQLDLPSLTIASLPRSSKISLIQVESRLNIDEFEKLCRIGLEACEVLKDEL 239


>gi|320334056|ref|YP_004170767.1| RNA-binding S1 domain-containing protein [Deinococcus maricopensis
           DSM 21211]
 gi|319755345|gb|ADV67102.1| RNA binding S1 domain protein [Deinococcus maricopensis DSM 21211]
          Length = 557

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   S  D   + +  KG+V  + +FGAFV      +GLVH+S++S  +RV   ++V+KE
Sbjct: 298 DPWESAVDKFAIGQKVKGKVTNLTNFGAFVEIEPGLEGLVHVSEMSWTKRVRHPNEVLKE 357

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GD V   +L  D +  +I L ++    +  
Sbjct: 358 GDEVEAIILRIDPKDRRISLGLRQTTDDPW 387



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           ++     + +  ++ I+ ++   L      +  F P      +   ++ ++    GK + 
Sbjct: 130 VLADMQAKDEPFQVDIIEKVRGGLVAQIDGIRAFLPAS---QVDTRRVNDLDPYVGKPLE 186

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             + +   K N      V I+  ++ E + A+    ++  +    K ++G+VV++ DFG 
Sbjct: 187 VKLIELNRKRN-----RVIISHRAIMEAKKAQAREETMHTLEPGAK-FEGEVVEITDFGV 240

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           FV+  G  DGLVH S+L+  R     DVVK GD V V+++D D  R +I LSMK +  + 
Sbjct: 241 FVNL-GGIDGLVHRSELTFGRFNHPRDVVKVGDKVDVQVIDVDPSRERINLSMKALTTDP 299

Query: 695 GKPIV 699
            +  V
Sbjct: 300 WESAV 304



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            KG+V  + DFG F+      +GL+HIS+L   RV   +D+ K+GD +   +L+ D    
Sbjct: 400 VKGKVTGLTDFGVFMEIEEGIEGLIHISELDLNRVNNPADLFKKGDEIEAVILNIDPVEQ 459

Query: 682 KIKLSMK 688
           +  LS +
Sbjct: 460 RASLSRR 466



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD 678
            +  G +V + + G  V      +GL+  +QL+ E +   +  +  K GD +   ++  D
Sbjct: 50  DVLTGTIVFIGNEGLMVDVGAKVEGLIPFNQLADEPLTQEQAQEQYKPGDQIEAYVVRSD 109

Query: 679 -DRGKIKLSMKVVDQNTG 695
              G+I LS K  DQ+ G
Sbjct: 110 LANGQIVLSKKRADQDKG 127


>gi|300727965|ref|ZP_07061343.1| hemin-binding protein [Prevotella bryantii B14]
 gi|299774807|gb|EFI71421.1| hemin-binding protein [Prevotella bryantii B14]
          Length = 593

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIIGK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQILEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVALDQKIKVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 269 FDEEKKRIALGLKQLTPHPW 288



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + +    +  +I +    
Sbjct: 191 HKALIEAELEAQRKEIIGKLEKGQILEGTVKNITSYG-----VFVDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 246 -WGRVSDPHEVVALDQKIKVVILDFDEEKKRIALGLKQLTPHPWDALDANLKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D  K+ 
Sbjct: 305 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 365 LGIKQLKEDPWEAI 378



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 373 DPWEAIEAKYPVGSKHNAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTQV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +LD D +  ++ L  K ++ N  
Sbjct: 433 GAEIDVIVLDIDKENRRLSLGHKQLEDNPW 462



 Score = 41.4 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+     +A+ S A++E A +   +       +++ +G V+ +      V+     DG++
Sbjct: 16  DEFENGSVANVSKADLEKAYDETLNKIQE---HEVVEGTVIALDKKEVIVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V + D  D +G++ LS K
Sbjct: 73  PASEFRY----NPE--LKIGDKVEVYVEDQEDKKGQLVLSHK 108


>gi|312890968|ref|ZP_07750494.1| Tex-like protein [Mucilaginibacter paludis DSM 18603]
 gi|311296544|gb|EFQ73687.1| Tex-like protein [Mucilaginibacter paludis DSM 18603]
          Length = 756

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++     G V  + +FGAFV     +DGLVH+SQ++   +   ++V+K    V V + D 
Sbjct: 635 KIGMQLPGIVTNITNFGAFVDIGVHQDGLVHLSQITNRYIKDPNEVLKVHQKVKVTVTDV 694

Query: 678 DD-RGKIKLSMKV 689
           D+ R +I LSMK 
Sbjct: 695 DESRKRIALSMKD 707


>gi|260437065|ref|ZP_05790881.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810374|gb|EFF69579.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
          Length = 367

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   V  + KG+V ++ DFGAFV      D L+H+SQ++ + + K ++V+K G 
Sbjct: 270 PWINVAEKYPVGSVVKGKVARMTDFGAFVELEEGVDALLHVSQIAKQHIEKPAEVLKIGQ 329

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            +  K++D + D  KI LS+K +
Sbjct: 330 EIEAKVVDLNADEHKISLSIKAL 352



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 11/202 (5%)

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
                G  A+ +      +    +  A +        +   +   LS    +   F P  
Sbjct: 81  TNDGDGFVALSVKRLAAELGSKKLEEAFENKTVLTAKVAQVLDGGLSVVIDETKVFIPAS 140

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
               +     +++    G+ I  ++ +   +          I       +    +M   +
Sbjct: 141 L---VSDTYEKDLSKYAGQEIEFVITEFNPR------KRRIIGDRKQLLVAKKAKMREEV 191

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
                V ++  G V  V DFG F+   G  DGL+H+S++S  R+       K GD V   
Sbjct: 192 MSKIAVGQVVTGTVKNVTDFGVFIDI-GGVDGLLHVSEISWGRIENPKKKFKPGDEVKAY 250

Query: 674 LLDFDDRGKIKLSMKVVDQNTG 695
           + D ++  KI LS+K  ++N  
Sbjct: 251 IKDINND-KIALSLKFDNENPW 271



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E  ++      + ++  G V++V +    ++     D ++  ++ ++        VVKEG
Sbjct: 12  EAEKTRKASVHMGEVLDGTVIEVREDQIILNIDYKSDAIITRNEYTSTPGVDLRTVVKEG 71

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           D +  K++   D  G + LS+K +    G
Sbjct: 72  DVITAKVIKTNDGDGFVALSVKRLAAELG 100


>gi|254698555|ref|ZP_05160383.1| hypothetical protein Babob28_12852 [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 136

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + 
Sbjct: 17  KPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEV 76

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I L+M+        P
Sbjct: 77  DVPRKRIGLTMRKDGGEAPAP 97


>gi|121610066|ref|YP_997873.1| 30S ribosomal protein S1 [Verminephrobacter eiseniae EF01-2]
 gi|121554706|gb|ABM58855.1| SSU ribosomal protein S1P [Verminephrobacter eiseniae EF01-2]
          Length = 562

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + I +G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L F
Sbjct: 191 EGS-IVQGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTAGQDITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    + +V  GD   V +L+ D D+ +
Sbjct: 282 GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPAKLVTLGDEAEVMVLEIDEDKRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 342 ISLGMKQCKANPWQE 356



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG V  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAQNTKRGDRVKGPVKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     + +    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWSEPGEAAVRNYKKGQEVQAIVLAVDVDRERISLGIKQLDGDP 440



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFVTVNDKGQTVTGKVKTVDARGAEIEIGQDIIGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAVVVNIDRKTRNIQLSIKQKD 523


>gi|87124899|ref|ZP_01080746.1| RNA binding S1 [Synechococcus sp. RS9917]
 gi|86167219|gb|EAQ68479.1| RNA binding S1 [Synechococcus sp. RS9917]
          Length = 369

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 242 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNV 300

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 301 NDQMKVMIIDLDAERGRISLSTKALEPEPG 330



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV++ G+     ++ +
Sbjct: 88  KPGDIVNGTVFALESKGAMIDIGAKTAAFMPMQEVSINRVEGLSDVLQPGEVREFFIMSE 147

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 148 ENEDGQLALSIRRIEYQRAWE 168


>gi|296085833|emb|CBI31157.3| unnamed protein product [Vitis vinifera]
          Length = 803

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            PE+  +YKG+V +VMD G FV       ++GLVH+SQ++T RV    DVVK    V+VK
Sbjct: 166 EPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVK 225

Query: 674 LLDFDDRGKIKLSMKV 689
           ++    + K+ LSM+ 
Sbjct: 226 VISVSGQ-KLSLSMRD 240


>gi|31789463|gb|AAP58577.1| putative 30S ribosomal protein S1 [uncultured Acidobacteria
           bacterium]
          Length = 318

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++  A +   D    +++ S       A +   +     +   + +G++ +  +FGAFV 
Sbjct: 104 QEIDAVITSIDAENRRLSLSIKDLEPNAWDRFLT---EHKPGDVVRGKIARFANFGAFVE 160

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
                +GL HIS+LS ERV K  DVV+ G  +  K+L  D +  KI LS + V ++  +P
Sbjct: 161 LDDNLEGLCHISELSDERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSARSVGKDD-EP 219

Query: 698 IV 699
           IV
Sbjct: 220 IV 221



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
             +++ +  +V     G+V  + DFGAF+      DGLVH+S +S   R+   S+V+K+G
Sbjct: 44  PWQTLHERYQVGTRVHGRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKG 103

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             +   +   D +  ++ LS+K ++ N  
Sbjct: 104 QEIDAVITSIDAENRRLSLSIKDLEPNAW 132



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           +RV   S +V  GDTV V++L  D +  +I L MK +  N  + +
Sbjct: 4   KRVKHPSKLVNPGDTVEVEVLSVDPKARRISLGMKQIQDNPWQTL 48


>gi|89900358|ref|YP_522829.1| 30S ribosomal protein S1 [Rhodoferax ferrireducens T118]
 gi|89345095|gb|ABD69298.1| SSU ribosomal protein S1P [Rhodoferax ferrireducens T118]
          Length = 566

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +  S  A +EA+    R+   +  +   I +G V  + ++GAFV   G  DGL+
Sbjct: 165 DRKRNNVVLSRRAVVEASMGEERAKLMNTLKEGAIVQGVVKNITEYGAFVDL-GGIDGLL 223

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           HI+ ++  RV   S+VV  G  +  K+L FD ++ ++ L +K +  +  
Sbjct: 224 HITDMAWRRVRHPSEVVTAGQEITAKILKFDTEKNRVSLGLKQLGDDPW 272



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + D+GAFV      +GLVH+S++    +    + +V  GD V V +L+ D D+ +
Sbjct: 287 GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNIAPAKIVALGDEVEVMVLEIDEDKRR 346

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 347 ISLGMKQCKANPWQE 361



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 89/262 (33%), Gaps = 42/262 (16%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK+  ++    D+ G +   H+  M ++     S +     +     I+  I+ 
Sbjct: 198 AIVQGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVTAGQE-----ITAKILK 252

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P+   M      I +      +  G + 
Sbjct: 253 FDTEKNRVS-----LGLKQLGDDPWMGVNRRYPQGTRMFGKITNIADYGAFVELEPGIEG 307

Query: 574 IRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           +  + E                        + ID+D           +        +   
Sbjct: 308 LVHVSEMDWTNKNIAPAKIVALGDEVEVMVLEIDEDKRRISLGMKQCKAN----PWQEFA 363

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVK 673
              +     KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   
Sbjct: 364 QNTKRGDRVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNETGEAAVREYKKGQEVEAL 423

Query: 674 LLDFD-DRGKIKLSMKVVDQNT 694
           +L  D DR +I L +K +D + 
Sbjct: 424 VLAVDVDRERISLGIKQLDSDP 445



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + +  ++  G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 444 DPFTTFATINDKGQVVTGKVKTVDAKGAEIDLGDDIIGYLRASEISRDRVEDARNVLKEG 503

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 504 DEVTAVVVNVDRKTRNIQLSIKAKD 528


>gi|187933110|ref|YP_001884760.1| 30S ribosomal protein S1 [Clostridium botulinum B str. Eklund 17B]
 gi|187721263|gb|ACD22484.1| putative 30S ribosomal protein S1 homolog [Clostridium botulinum B
           str. Eklund 17B]
          Length = 378

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E     T+  +   I++G+VVK   FGAFV      +GLVHIS+++ E +AK SD ++ 
Sbjct: 265 KEPWTLHTNEIKSGMIFEGKVVKFASFGAFVEIFEGIEGLVHISEITDENIAKPSDALEL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V VK+LDF+ D  ++ LS+K   + + +
Sbjct: 325 NQKVKVKVLDFNKDTKRLSLSIKDAVETSKE 355



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     + +D      +AS    E E   +  + I +  +  +   G V K++ +GAFV
Sbjct: 151 TELEVRIIELDFRNNKVVASRKAIENEEYEKNRKVIWNSLKEGEKRTGVVKKLVKYGAFV 210

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              G  +GLVHIS LS  RV +  +VVKE D V V +   D ++ K+ L +K +++   
Sbjct: 211 DI-GGVEGLVHISDLSWNRVNRPEEVVKENDKVEVYIGSIDVEKQKLSLVLKDINKEPW 268



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                      +I KG+V++V +  A V+   A DGL+   ++S +      DV+   D 
Sbjct: 11  EEYDVKRINKGQILKGKVLEVNEKEAVVNINYAFDGLIAKEEVSIDD-KNPMDVLSVDDE 69

Query: 670 VWVKLLDF-DDRGKIKLSM-KVV 690
           + V ++   D  G +KLS+ K +
Sbjct: 70  IDVYVISPNDGEGYVKLSLIKAL 92


>gi|224532124|ref|ZP_03672756.1| ribosomal protein S1 [Borrelia valaisiana VS116]
 gi|224511589|gb|EEF81995.1| ribosomal protein S1 [Borrelia valaisiana VS116]
          Length = 551

 Score = 84.2 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 17/141 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE--MIRSITDVP 617
            + I + + +G K+   I+              +   +  +     A +     S+    
Sbjct: 223 VENIEDFVRVGDKLKLKII-------------KINPQTGKMELSLKALKANPWDSVDVKY 269

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQIVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQNTGK 696
            D +  +I L +K +++N  +
Sbjct: 330 IDKENQRISLGIKQINENPWE 350



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + DG   I      E E        +        +  G V ++ ++GA V       G++
Sbjct: 154 ESDGLRLILDRRTLERERELVKRIELVSSYNEEDVVDGVVDRITEYGAIVKIKNFVTGIL 213

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           H   ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 214 HKRNIAFNQVENIEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 5/144 (3%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            + I       VI    ++I+         + ID +                      +T
Sbjct: 298 FLHISNFSWIRVIKSPQELIKLGQIVEVKILEIDKENQRISLGIKQINEN----PWERLT 353

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +   + K+ +G V  +   GAFV+     D  V    +S        +  K GD V  K+
Sbjct: 354 EKYPIGKVIQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGDLVNGKV 413

Query: 675 LDFDDRGK-IKLSMKVVDQNTGKP 697
           L+ D R + ++L +K ++++  + 
Sbjct: 414 LEVDRRKRNVRLGIKQLEESPWED 437


>gi|228956677|ref|ZP_04118468.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229107916|ref|ZP_04237547.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-15]
 gi|229125749|ref|ZP_04254778.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-Cer4]
 gi|296501067|ref|YP_003662767.1| transcription accessory protein [Bacillus thuringiensis BMB171]
 gi|228657722|gb|EEL13531.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-Cer4]
 gi|228675539|gb|EEL30752.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-15]
 gi|228803015|gb|EEM49842.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296322119|gb|ADH05047.1| transcription accessory protein [Bacillus thuringiensis BMB171]
          Length = 722

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|228950775|ref|ZP_04112904.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229067998|ref|ZP_04201311.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus F65185]
 gi|229077597|ref|ZP_04210237.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-2]
 gi|229148642|ref|ZP_04276896.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1550]
 gi|228634900|gb|EEK91475.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus m1550]
 gi|228705716|gb|EEL58062.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-2]
 gi|228715136|gb|EEL66999.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus F65185]
 gi|228808915|gb|EEM55405.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 722

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|206972207|ref|ZP_03233154.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|229176835|ref|ZP_04304236.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 172560W]
 gi|206732781|gb|EDZ49956.1| S1 RNA binding domain protein [Bacillus cereus AH1134]
 gi|228606643|gb|EEK64063.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus 172560W]
          Length = 722

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|225433644|ref|XP_002264430.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089601|emb|CBI39420.3| unnamed protein product [Vitis vinifera]
          Length = 390

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 17/141 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P +    I  G      I      KV + D+   K+  S               +    +
Sbjct: 145 PHKTIQEIAKG-----LIGSLISVKVILADEEKRKLIFSEKEAA------WLKFSKQINI 193

Query: 620 NKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
             I++  V  V D+GAFVH           GLVH+S++S + V    DV+ EGD V VK+
Sbjct: 194 GDIFEAMVGSVEDYGAFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKI 253

Query: 675 LDFDD-RGKIKLSMKVVDQNT 694
           +  D  + +I LS+K ++++ 
Sbjct: 254 VKVDRVKSRITLSIKQLEEDP 274


>gi|197119621|ref|YP_002140048.1| 30S ribosomal protein S1 [Geobacter bemidjiensis Bem]
 gi|197088981|gb|ACH40252.1| ribosomal protein S1 [Geobacter bemidjiensis Bem]
          Length = 584

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +  GG + R + +    ++   +     +  S    +E  R+  R+ T    +   I  G
Sbjct: 163 LRPGGNMDRFVGQTYQFRILKLNRKRGNLVLSRRVLLEEERDKARTETLATLKEGDIVNG 222

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + ++GAFV   G  DGL+H++ +S  R+   S++VK GDT+ V +L +D ++GKI 
Sbjct: 223 VVKNIAEYGAFVDL-GGVDGLLHVTDMSWGRLGHPSEMVKVGDTLNVMVLKYDREKGKIS 281

Query: 685 LSMKVVDQNTG 695
           L +K    +  
Sbjct: 282 LGLKQTVPDPW 292



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ D  +  +   G+VV + D+GAF+      +GLVH+S++S   RV   S+++K 
Sbjct: 290 DPWLNVGDRYKEGERVSGKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEILKV 349

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G+ V   +L  D    +I L +K  + N  
Sbjct: 350 GEEVEAVILGVDPGNRRISLGLKQTEINPW 379



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    I          KG+V  V DFG FV      +GL+H+S++S E+VA   D   
Sbjct: 462 AADPWEEIPRKYRPGSKVKGRVTSVTDFGIFVEIEEGIEGLIHVSEISYEKVASPKDFAN 521

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            GD +   +L+ D    KI LS+K + 
Sbjct: 522 VGDELEAVVLNVDMVEKKIALSIKALQ 548



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P   KI +GQ+  + DFG F+      DGLVH+S +S   RV    ++  +G TV   +L
Sbjct: 387 PVGTKI-EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTRRVKHPGEMFAKGQTVQAVVL 445

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
           + D +  ++ L +K +  +  + I
Sbjct: 446 NIDVENERLSLGIKQLAADPWEEI 469


>gi|121604844|ref|YP_982173.1| RNA-binding S1 domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593813|gb|ABM37252.1| RNA binding S1 domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 778

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 101/274 (36%), Gaps = 28/274 (10%)

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
           R +S + E   +S    +  +S+ L+     +S+ VA   +        F   +D+    
Sbjct: 486 RSLSAVVEDCVNSVGVDLNTASVPLLARVSGLSQTVAKSVVRWRDANGAFGSRADLL--- 542

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
             +  +  K     +G   ++       ++                 ++ ++        
Sbjct: 543 -KVTGLGAKTFEQSAGFLRLRGGTNPLDMT---------GVHPETYAVVEKIMAHTGRPV 592

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L      ++ +   P+   N       V   + E      +   D  V   +  + +I
Sbjct: 593 AELMGRAEMLKTLK--PELFANEKFGVITVKDILAELEKPARDPRPDFKVARFNDGVEDI 650

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +E             + +G V  V  FGAF+     +DGLVH+SQLS + V    +V
Sbjct: 651 RDLKE-----------GMLLEGTVSNVAAFGAFIDIGVHQDGLVHVSQLSNKFVTDAREV 699

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           VK GD V V++ + D  R +I L+MK +D    +
Sbjct: 700 VKTGDIVKVRVTEVDVARKRIGLTMK-LDAAPAR 732


>gi|313617454|gb|EFR89830.1| general stress protein 13 [Listeria innocua FSL S4-378]
          Length = 117

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 65  DEEKNKISLSIRATEEAPKE 84


>gi|150015374|ref|YP_001307628.1| 30S ribosomal protein S1 [Clostridium beijerinckii NCIMB 8052]
 gi|149901839|gb|ABR32672.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 384

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQ 580
           ++    R  I  E      ++     +   +   +     +    + +GG   +  + + 
Sbjct: 169 KKVIASRRIIEEEEYNKNKKNIWDNLKEGEKRNGVVKKIVKFGAFVDIGGVEGLIHLSDL 228

Query: 581 TGAKVNIDDD------------GTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQ 626
           +  +VN  +D            G V   +  L+ I              ++N+  I++G+
Sbjct: 229 SWERVNKPEDIVKEGDNVEVFIGNVDRKNERLSLILKDVTKEPWTVHGKDINEGDIFEGK 288

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V+++  FGAFV      +GLVHI++++ E +AK SDV++    V VK+L  + +  +I L
Sbjct: 289 VIRLTTFGAFVELFDGIEGLVHITEITDEHIAKPSDVLEANQKVKVKVLSVNREEKRIAL 348

Query: 686 SMKVVDQNTGK 696
           S+K   +   +
Sbjct: 349 SIKEAVETNKE 359


>gi|330718559|ref|ZP_08313159.1| transcriptional accessory protein [Leuconostoc fallax KCTC 3537]
          Length = 727

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +        + A+  + +   + +G + +R I+                          A
Sbjct: 587 VKGHATDSALTALDNEMMAKTLNVGRETLRDIITSL----------RRPGRDGRSEMTGA 636

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
                    +  +V    +G V  V+DFGAFV     +DGLVHIS+L+ +RV   S+VV 
Sbjct: 637 LLRADVLRIEDLKVGMKMQGTVRNVVDFGAFVDLGVKQDGLVHISKLAQKRVTHPSEVVA 696

Query: 666 EGDTVWVKLLDFDD-RGKIKLSM 687
            GD V V +   D+ R +I LSM
Sbjct: 697 VGDIVDVWIESVDEKRHRIGLSM 719


>gi|256823536|ref|YP_003147499.1| RNA-binding S1 domain-containing protein [Kangiella koreensis DSM
           16069]
 gi|256797075|gb|ACV27731.1| RNA binding S1 domain protein [Kangiella koreensis DSM 16069]
          Length = 773

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 14/126 (11%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVP------------EVNKIYKGQVVKVMDF 633
            IDD   +   +  L E++      R    +             ++    +G V  V  F
Sbjct: 607 FIDDTFGLHTVNDILKELDKPGRDPRPEFKMVQFKDGVDTLNDLKIGMELEGVVTNVTAF 666

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD- 691
           GAF+     +DGLVH+S ++ E +   ++VVK GD V V +LD D  R +I LSM   D 
Sbjct: 667 GAFIDVGVHQDGLVHLSMMANEFIKDPAEVVKAGDIVKVWVLDVDMQRKRISLSMIGPDA 726

Query: 692 QNTGKP 697
           Q   KP
Sbjct: 727 QAASKP 732


>gi|49483663|ref|YP_040887.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425540|ref|ZP_05601965.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428199|ref|ZP_05604597.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430829|ref|ZP_05607211.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433588|ref|ZP_05609946.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436429|ref|ZP_05612476.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876]
 gi|282904058|ref|ZP_06311946.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160]
 gi|282905822|ref|ZP_06313677.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908793|ref|ZP_06316611.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911053|ref|ZP_06318855.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914266|ref|ZP_06322053.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899]
 gi|282919189|ref|ZP_06326924.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427]
 gi|282924373|ref|ZP_06332047.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101]
 gi|283958240|ref|ZP_06375691.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501291|ref|ZP_06667142.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510253|ref|ZP_06668961.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809]
 gi|293526848|ref|ZP_06671532.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015]
 gi|295427984|ref|ZP_06820616.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591046|ref|ZP_06949684.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8]
 gi|81651112|sp|Q6GGT5|RS1_STAAR RecName: Full=30S ribosomal protein S1
 gi|49241792|emb|CAG40483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271997|gb|EEV04135.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275040|gb|EEV06527.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278957|gb|EEV09576.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281681|gb|EEV11818.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284711|gb|EEV14831.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M876]
 gi|282313760|gb|EFB44153.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C101]
 gi|282316999|gb|EFB47373.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus C427]
 gi|282322334|gb|EFB52658.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M899]
 gi|282324748|gb|EFB55058.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327057|gb|EFB57352.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331114|gb|EFB60628.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595676|gb|EFC00640.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus C160]
 gi|283790389|gb|EFC29206.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920406|gb|EFD97470.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus M1015]
 gi|291096296|gb|EFE26557.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467197|gb|EFF09715.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus M809]
 gi|295128342|gb|EFG57976.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575932|gb|EFH94648.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MN8]
 gi|312438121|gb|ADQ77192.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 391

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+      E + I +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFH--ENDDI-EGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|16080191|ref|NP_391017.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311081|ref|ZP_03592928.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315408|ref|ZP_03597213.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320324|ref|ZP_03601618.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324608|ref|ZP_03605902.1| general stress protein 13 [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312683|ref|YP_004204970.1| general stress protein 13 [Bacillus subtilis BSn5]
 gi|3123231|sp|P80870|GS13_BACSU RecName: Full=General stress protein 13; Short=GSP13
 gi|237640365|pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis
 gi|1934792|emb|CAB07921.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2635635|emb|CAB15128.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485587|dbj|BAI86662.1| general stress protein 13 [Bacillus subtilis subsp. natto BEST195]
 gi|320018957|gb|ADV93943.1| general stress protein 13 [Bacillus subtilis BSn5]
          Length = 130

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MAAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K+L  D ++GKI LS++       K
Sbjct: 61  KVLAVDEEKGKISLSIRATQAAPEK 85


>gi|320529136|ref|ZP_08030228.1| putative ribosomal protein S1 [Selenomonas artemidis F0399]
 gi|320138766|gb|EFW30656.1| putative ribosomal protein S1 [Selenomonas artemidis F0399]
          Length = 384

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   VE    +V++     V      L    A +E        PE  ++ +G V +++D+
Sbjct: 145 VDQTVEAEIIEVDVQKRRLVLSRRKLLERDRAEKEEAVFSAIEPE--QVVRGTVKRLVDY 202

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL HIS L+  RV   S+V++ G  + V +   D D  +I LS+K    
Sbjct: 203 GAFIDI-GGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSVDRDAKRISLSVKDTLP 261

Query: 693 NTG 695
           +  
Sbjct: 262 DPW 264



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      +        +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  G
Sbjct: 262 DPWVEKAEQYAEGDFIEGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTG 321

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           D V VK+L  D  R +I LS+
Sbjct: 322 DIVTVKVLRIDTKRKRISLSI 342


>gi|320142721|gb|EFW34524.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 398

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 145 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 198

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 199 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 258 DRDTERISLSIKDTLPTPFENI 279



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 245 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 301

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 302 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 361



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTER 656
                 +   E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  
Sbjct: 1   MYKEANKMTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           +   S+VVKEGD V   +        ++ G   LS + ++
Sbjct: 61  IDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 100


>gi|238897898|ref|YP_002923577.1| 30S ribosomal subunit protein S1 [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465655|gb|ACQ67429.1| 30S ribosomal subunit protein S1 [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 564

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 17/205 (8%)

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI-MAIPPD 561
           + +D    G  E ++     + K  R  +  ++ +  +      G  T +V+    +  D
Sbjct: 70  LALDSMEDGFGETLL----SREKAKRQEVWKKLEEAYTNGTFVTGMITGKVKGGFTVDMD 125

Query: 562 QIRNV-------IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE-AAREMIRSI 613
            IR         +           ++   K+   D     +  S    I+         +
Sbjct: 126 GIRAFLPGSLVDVHPVRDTSHLENKEHQCKIIKLDKKRNNVVVSRRDVIKSENSAEREQL 185

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +  +V +   G V  + D+GAFV   G  DGL+HI+ +S +RV   S+VV   D + VK
Sbjct: 186 LERLKVGQEVSGTVKNLTDYGAFVEL-GGIDGLLHITDMSLKRVKHPSEVVSISDQITVK 244

Query: 674 LLDFDDRG---KIKLSMKVVDQNTG 695
           +L  + RG   +I L +K +  +  
Sbjct: 245 ILKIERRGDEIRISLGLKQLSPDPW 269



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I++  +VN    G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 267 DPWVGISERYKVNDEITGRVTNLPDYGCFVEIEPGVEGLVHVSEMDWTNKNIHPSKVVSV 326

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            D+V VK+LD D+ R +I L +K   +N  K
Sbjct: 327 QDSVKVKVLDIDEQRRRISLGLKQCTENPWK 357



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID+                     +          I KG++  + DFG F+      D
Sbjct: 335 LDIDEQRRRISLGLKQCTEN----PWKKFDANHNKGDIVKGKIKSITDFGIFIGLEDNID 390

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLD-FDDRGKIKLSMKVVDQNT 694
           GLVH+S +S   V+    V   K+G  +   L +   DR +I LS+K + ++ 
Sbjct: 391 GLVHLSDISWN-VSGQEAVREYKKGQEIEAVLSEVIADRERISLSIKQLSEDP 442


>gi|227431684|ref|ZP_03913715.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352557|gb|EEJ42752.1| S1 domain RNA-binding protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 730

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             + A  +      +  +     +G V  V+DFGAFV      DGLVHIS++ST R+   
Sbjct: 639 EMVGALLKSDVMHIEDLKAGMKLQGTVRNVVDFGAFVDLGVKHDGLVHISRISTRRIKHP 698

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           S++V  GD V V ++D D+ R +I L+M
Sbjct: 699 SEIVSVGDIVEVWIVDVDEKRNRIGLTM 726


>gi|168698087|ref|ZP_02730364.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246]
          Length = 546

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 31/246 (12%)

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM-------KIGGISENIMVMALQQAKR 526
           ++ + ++G   +   +  +VAG    + A Q+D+       +  G    +MV   +    
Sbjct: 254 VVEAKVTGTNKNKTGLTIEVAGIKGFLPASQLDLYRVENVDQFVGQRLKVMV--SEVNPE 311

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-------IRGIVE 579
            R  I++  + +  E +++  EF   VE   +    +R+V   G  V       +  + E
Sbjct: 312 ERNLIVSRRAVLEREKQVKAEEFWRTVEKDQVRKGIVRSVKPFGAFVDLGGADGLIPVSE 371

Query: 580 QTGAKVN-------IDDDGTVKIASSSLAEIEAAREM-------IRSITDVPEVNKIYKG 625
            +  +VN       I  +  VKI+       +    M           T   +      G
Sbjct: 372 FSWQRVNDLNEVVKIGQEVEVKISKIDFEARKIGLSMRALTTSPFEEFTKTTQAGARVTG 431

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
           +V ++ DFGAFV      +GL+H+S+LST+RV + SDV++ G  V V++L  D    +I 
Sbjct: 432 KVSRLADFGAFVELAPGLEGLIHVSELSTQRVRRVSDVIEPGQNVIVEILSTDPVTKRIA 491

Query: 685 LSMKVV 690
           LS+K +
Sbjct: 492 LSLKKI 497


>gi|21283094|ref|NP_646182.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49486315|ref|YP_043536.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650431|ref|YP_186360.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL]
 gi|87162219|ref|YP_494062.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195210|ref|YP_500011.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221597|ref|YP_001332419.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509643|ref|YP_001575302.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140957|ref|ZP_03565450.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253733277|ref|ZP_04867442.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451134|ref|ZP_05699169.1| ribosomal protein S1 [Staphylococcus aureus A5948]
 gi|262048998|ref|ZP_06021877.1| 30S ribosomal protein S1 [Staphylococcus aureus D30]
 gi|262051645|ref|ZP_06023865.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3]
 gi|282921723|ref|ZP_06329440.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765]
 gi|284024474|ref|ZP_06378872.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus 132]
 gi|294848439|ref|ZP_06789185.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754]
 gi|300911950|ref|ZP_07129393.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380941|ref|ZP_07363600.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81649285|sp|Q6G987|RS1_STAAS RecName: Full=30S ribosomal protein S1
 gi|81694467|sp|Q5HFU7|RS1_STAAC RecName: Full=30S ribosomal protein S1
 gi|81762485|sp|Q8NWM8|RS1_STAAW RecName: Full=30S ribosomal protein S1
 gi|21204534|dbj|BAB95230.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244758|emb|CAG43194.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57284617|gb|AAW36711.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus COL]
 gi|87128193|gb|ABD22707.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202768|gb|ABD30578.1| 30S ribosomal protein S1, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374397|dbj|BAF67657.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368452|gb|ABX29423.1| ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728817|gb|EES97546.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861189|gb|EEV84002.1| ribosomal protein S1 [Staphylococcus aureus A5948]
 gi|259160486|gb|EEW45510.1| 30S ribosomal protein S1 [Staphylococcus aureus 930918-3]
 gi|259162930|gb|EEW47493.1| 30S ribosomal protein S1 [Staphylococcus aureus D30]
 gi|269940967|emb|CBI49351.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282593985|gb|EFB98974.1| 30S ribosomal protein S1 [Staphylococcus aureus A9765]
 gi|294824465|gb|EFG40888.1| 30S ribosomal protein S1 [Staphylococcus aureus A9754]
 gi|300886196|gb|EFK81398.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751306|gb|ADL65483.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340527|gb|EFM06462.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315197777|gb|EFU28111.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140352|gb|EFW32208.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|329314152|gb|AEB88565.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723178|gb|EGG59709.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21189]
          Length = 391

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|229041141|ref|ZP_04189900.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH676]
 gi|228727203|gb|EEL78401.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus AH676]
          Length = 722

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
 gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
          Length = 408

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 4/116 (3%)

Query: 585 VNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + I+  +  + ++  ++ E + A + +  +  +     I +G++ ++ DFGAF+   G  
Sbjct: 171 IEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAG-DIVEGKIARLTDFGAFIDL-GGI 228

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           DGLVH+S+++   V K SD +  G+ V VK+L  + D G+I LS+K         I
Sbjct: 229 DGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEGRISLSIKETLPGAWTNI 284



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I E    K+   +    +I+ S    +  A   I        V  I +G V ++  FGA
Sbjct: 250 TIGEDVNVKILSINPDEGRISLSIKETLPGAWTNIEEKAP---VGSILEGTVKRLTSFGA 306

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV      +GLVHISQ+S + +A   +V+ EGD + VK+L+   +  ++ LS+K ++   
Sbjct: 307 FVEVFPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKALETKP 366



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERV 657
                 A  E   +      +  I KG+V+ + D    V   G   +G+V   +LST  V
Sbjct: 8   QEKSENATMEEAINSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSYV 67

Query: 658 AKTSDVVKEGDTVWVKLLDF----DDRGKIKLSMKVVD 691
              +D VK GD + + ++       + G   LS + +D
Sbjct: 68  ENINDFVKIGDKLDLVVISSIGKDKENGNYLLSKRRLD 105


>gi|253732118|ref|ZP_04866283.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724165|gb|EES92894.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 398

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 145 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 198

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 199 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 257

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 258 DRDTERISLSIKDTLPTPFENI 279



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 245 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 301

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 302 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 361



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTER 656
                 +   E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  
Sbjct: 1   MYKEANKMTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           +   S+VVKEGD V   +        ++ G   LS + ++
Sbjct: 61  IDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 100


>gi|116618382|ref|YP_818753.1| transcriptional accessory protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097229|gb|ABJ62380.1| Transcriptional accessory protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 730

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             + A  +      +  +     +G V  V+DFGAFV      DGLVHIS++ST R+   
Sbjct: 639 EMVGALLKSDVMHIEDLKAGMKLQGTVRNVVDFGAFVDLGVKHDGLVHISRISTRRIKHP 698

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           S++V  GD V V ++D D+ R +I L+M
Sbjct: 699 SEIVSVGDIVEVWIVDVDEKRNRIGLTM 726


>gi|282916743|ref|ZP_06324501.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139]
 gi|283770548|ref|ZP_06343440.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19]
 gi|282319230|gb|EFB49582.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus D139]
 gi|283460695|gb|EFC07785.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus H19]
 gi|298694765|gb|ADI97987.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333086|gb|ADL23279.1| putative 30S ribosomal protein S1 [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|329731355|gb|EGG67721.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           21193]
          Length = 391

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|167949191|ref|ZP_02536265.1| polynucleotide phosphorylase/polyadenylase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 49

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY 107
           ++YQE+TYA GKIPGG+ RRE RP+E EIL SR+IDR IRPLF K Y
Sbjct: 1   MDYQEKTYAAGKIPGGFFRREGRPSEKEILTSRLIDRPIRPLFPKGY 47


>gi|167752365|ref|ZP_02424492.1| hypothetical protein ALIPUT_00609 [Alistipes putredinis DSM 17216]
 gi|167660606|gb|EDS04736.1| hypothetical protein ALIPUT_00609 [Alistipes putredinis DSM 17216]
          Length = 647

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V    + +     A++ +  I   
Sbjct: 204 QIDVKPIRDY----DVYVDKTMEFKVVKINQEFRNVVVSHKALIEAELEAQKQV--IMSK 257

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV    ++V   + + V +LD
Sbjct: 258 LEKGQILEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVNHPEEIVSLDEKIRVVILD 316

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
           FDD + +I L +K +  +  + +
Sbjct: 317 FDDAKKRIALGLKQLAPHPWEAL 339



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 179 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVYVDKTMEFKVVKINQEFRNVVVS 238

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  ++L  +   +  +      + +    +  +I +    
Sbjct: 239 HKALIEAELEAQKQVIMSKLEKGQILEGTVKNITSYG-----VFVDLGGVDGLIHITDLS 293

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V++D+   V I     A+   A            ++    +V    KG+
Sbjct: 294 -WGRVNHPEEIVSLDEKIRVVILDFDDAKKRIALGLKQLAPHPWEALDPNLKVGDHVKGK 352

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 353 VVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDRNERKMS 412

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +    I
Sbjct: 413 LGIKQLTPDPWADI 426



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V    K +V    +FG FV      DGL+HIS LS  +++    +    
Sbjct: 421 DPWADIETRYPVGTKCKAKVRNFTNFGVFVEIEEGIDGLIHISDLSWTKKIKHPGEFTSV 480

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 481 GAEIEVVVLEVDKENRRLSLGHKQLEENPW 510



 Score = 41.4 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +  + +      +I  A +   S       N++ +G V+ +      V+     +G++ I
Sbjct: 66  ENDLGVYDQPKEQIGEAYDKTLSNIA---ANEVTEGTVIGINKREVVVNIGYKSEGIIPI 122

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQ 692
           S+            +K GD + V +    D  G++ LS K   Q
Sbjct: 123 SEFRY----NPD--LKVGDKIEVYVESAEDKNGQLALSHKKARQ 160



 Score = 37.6 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                     V+ +++G + ++ D GA V      +G   + QL  E     +     G+
Sbjct: 509 PWNEFEGQFAVDSVHEGTITEMTDKGAVVSLGENVEGFAPMRQLVKEDGTTAT----VGE 564

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            +  K+++F     +I LS   + +   +
Sbjct: 565 KLPFKVIEFSKATKRITLSHTRLFEEAKR 593


>gi|87199343|ref|YP_496600.1| 30S ribosomal protein S1 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135024|gb|ABD25766.1| SSU ribosomal protein S1P [Novosphingobium aromaticivorans DSM
           12444]
          Length = 566

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAVLEETRAEQRSGLIQNLKEG-QIIDGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV   S+V+  GDTV V+++  + D  +I L MK ++ +  
Sbjct: 229 DMSYKRVNHPSEVIAIGDTVRVQIIRINQDTQRISLGMKQLESDPW 274



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V    +G V  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 272 DPWDGVAAKYPVGAKLRGTVTNITEYGAFVELEAGIEGLVHVSEMSWTKKNVHPGKIVST 331

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D D+ +I L +K   QN  +
Sbjct: 332 SQEVDVMVLEVDSDKRRISLGLKQAQQNPWE 362



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A +    +  +   V    +G+V    +FG F+   G  DG+VH+S ++        D 
Sbjct: 355 QAQQNPWEAFAEKHPVGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWG--ISGEDA 412

Query: 664 V---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           +   ++G+ V   +LD D ++ +I L MK +++
Sbjct: 413 LALHRKGEQVSAVVLDVDVEKERISLGMKQLEK 445



 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 20/59 (33%)

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
               G +  S L  +R  +  D  + G  +   +  FD   K   S+K       K  V
Sbjct: 484 DGATGFIKRSDLGRDRDEQRPDRFQVGQKIDAMVTGFDRSKKPNFSVKARQLAEEKEAV 542


>gi|332968746|gb|EGK07796.1| YhgF like protein [Psychrobacter sp. 1501(2011)]
          Length = 861

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 83/242 (34%), Gaps = 14/242 (5%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           A+G+  +     IL+ I+G   ++              T  +    +  +       A  
Sbjct: 552 AVGVDVNTASPAILAHIAGLNRNVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAG 611

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV----IRGIV 578
             +        + + V  ES   + E   +         Q+  V+G    +    + GI 
Sbjct: 612 FLRIRDGEEPLDATGVHPESYDLVKEILAKSG------KQVTEVLGNDSVINTLAVDGIE 665

Query: 579 EQTGAKVNI---DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
                 ++I     +              A      +     E     +G V  V  FG 
Sbjct: 666 AANDENISIAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGC 725

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV     +DGLVHIS+++ + V    ++VK GD V V+++  D  R +I  SMK      
Sbjct: 726 FVDVGVHQDGLVHISEMANDFVEDPMNLVKPGDIVNVRVISVDAKRNRIGFSMKSEQAAP 785

Query: 695 GK 696
            K
Sbjct: 786 AK 787


>gi|331085544|ref|ZP_08334628.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407431|gb|EGG86933.1| hypothetical protein HMPREF0987_00931 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 222

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           + E     ++ID      + S+     E              V  I  G V  +  +GAF
Sbjct: 78  LKEIKVRVIDIDPAENRLVLSAREILKEEQAAERAKKVQEIPVGSILSGTVDSLQSYGAF 137

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           +       GLVH+SQ+  +R+   +DV+K G+ V VK++   D GKI LSMK +
Sbjct: 138 ILLENGLSGLVHVSQICEKRIKSPADVLKTGEEVQVKVIGIKD-GKISLSMKAL 190


>gi|258422493|ref|ZP_05685401.1| ribosomal protein S1 [Staphylococcus aureus A9635]
 gi|257847250|gb|EEV71256.1| ribosomal protein S1 [Staphylococcus aureus A9635]
          Length = 391

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIASGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|194379410|dbj|BAG63671.1| unnamed protein product [Homo sapiens]
          Length = 243

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G  + GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGKPI 698
            MKVV+Q TGK +
Sbjct: 62  PMKVVNQGTGKDL 74


>gi|301632867|ref|XP_002945501.1| PREDICTED: protein tex-like [Xenopus (Silurana) tropicalis]
          Length = 792

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +  I D+ E   + +G V  V  FGAFV     +DGLVH+SQLS + V+   +VVK G
Sbjct: 661 EGVEDIADLKEG-MVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVSDAREVVKTG 719

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V VK+L+ D  R +I L+M+
Sbjct: 720 AIVKVKVLEVDAARKRISLTMR 741


>gi|225420174|ref|ZP_03762477.1| hypothetical protein CLOSTASPAR_06517 [Clostridium asparagiforme
           DSM 15981]
 gi|225041231|gb|EEG51477.1| hypothetical protein CLOSTASPAR_06517 [Clostridium asparagiforme
           DSM 15981]
          Length = 259

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN--KIYKGQVVK 629
           + +     +    + I  D   K    S  E+E  R+       + +     + +G V  
Sbjct: 106 EKLEDWQGKNIDVIVITADTEKKRLVLSGREVEKERKEAERKEKLAQFKAGDVVEGTVDS 165

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           + ++GAF+      DGL+H+SQ+ST+R+     V+KEG +V VK+L   D GKI LSMK 
Sbjct: 166 LKNYGAFIKLADGVDGLLHVSQISTQRIKHPGVVLKEGQSVKVKILSVAD-GKISLSMKA 224

Query: 690 V 690
           +
Sbjct: 225 L 225


>gi|261417556|ref|YP_003251238.1| hypothetical protein GYMC61_0056 [Geobacillus sp. Y412MC61]
 gi|319765213|ref|YP_004130714.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
 gi|261374013|gb|ACX76756.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61]
 gi|317110079|gb|ADU92571.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
          Length = 132

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V+VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDMVYVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
              GKI LS++      
Sbjct: 64  GQDGKIGLSIRKAKDTP 80


>gi|332312793|gb|EGJ25888.1| General stress protein 13 [Listeria monocytogenes str. Scott A]
          Length = 124

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 12  KVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 71

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  ++   +
Sbjct: 72  DEEKNKISLSIRATEEAPKE 91


>gi|323439521|gb|EGA97242.1| 30S ribosomal protein S1 [Staphylococcus aureus O11]
 gi|323442240|gb|EGA99871.1| 30S ribosomal protein S1 [Staphylococcus aureus O46]
          Length = 391

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRMANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|283470687|emb|CAQ49898.1| putative 30S ribosomal protein S1 homolog [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 391

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFRE---NDVIEGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|220905593|ref|YP_002480905.1| 30S ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869892|gb|ACL50227.1| ribosomal protein S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 570

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  ++D+GAFV      +GLVHIS++S  R +   S +V  GD V V +L  D ++ +
Sbjct: 293 GKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKR 352

Query: 683 IKLSMKVVDQNTGK 696
           I L MK V  N  +
Sbjct: 353 ISLGMKQVRPNPWE 366



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N      +      L E   ++      T   E  +  +G+   + ++G FV 
Sbjct: 164 EFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLRT--LEEGQTVEGKAKNITEYGVFVD 221

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S +R+    +++  G  + +K+L FD D  K+ L +K +  +  + 
Sbjct: 222 L-GGLDGLLHITDMSWKRIRHPKEMITIGQELTLKVLSFDRDNNKVSLGLKQLVPDPWQD 280

Query: 698 I 698
           I
Sbjct: 281 I 281



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
             KG V  + DFG FV      +GLVH+S+LS+++V   +++ KEG  +  K++    + 
Sbjct: 464 TVKGIVTNITDFGLFVEVEEGIEGLVHVSELSSKKVKTPAEIYKEGQEIQAKVIHVSAEE 523

Query: 681 GKIKLSMKVVDQ 692
            ++ LS+K + +
Sbjct: 524 RRLGLSIKQIQE 535



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + +      I +G +  + +FG F+      DGL+H+S +S  ++V   +++ K G
Sbjct: 364 PWELVAEKYPEGTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNEMYKVG 423

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           DTV  K+L  D +  K  L +K +  +  
Sbjct: 424 DTVQAKVLTVDQENEKFTLGVKQLVDDPW 452


>gi|331091238|ref|ZP_08340079.1| hypothetical protein HMPREF9477_00722 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404685|gb|EGG84224.1| hypothetical protein HMPREF9477_00722 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 363

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
            P ++  V    G+ I+ +V+      +I+D   V ++         A    +       
Sbjct: 232 NPKKVFQV----GETIKVLVK------DINDT-KVALSLKFPETNPWANAEEKYAVGTE- 279

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
                 G+V ++ DFGAFV      D L+H+SQ+S   V K +DV+  G  +  K++D +
Sbjct: 280 ----VTGKVARMTDFGAFVELAPGVDALLHVSQISKVHVEKPADVLNVGQEITAKIVDLN 335

Query: 679 -DRGKIKLSMKVV 690
               KI LSMK +
Sbjct: 336 VADKKISLSMKAL 348



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 11/181 (6%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             +  A +  +  +  +   +   LS    +   F P      +     +++    G+ I
Sbjct: 98  ERLKEAFENKEVLKATVNQILGGGLSVVVDEARVFIPASL---VSDTYEKDLSKYQGQEI 154

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
             ++ +   + N      V      L   E A+       ++ +V  + +G V  V DFG
Sbjct: 155 EFVISEFNPRRN-----RVIGDRRQLLVAEKAKLQEELFANL-KVGDVVEGTVKNVTDFG 208

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           AF+   G  DGL+HIS++S  RV     V + G+T+ V + D +D  K+ LS+K  + N 
Sbjct: 209 AFIDL-GGVDGLLHISEMSWGRVENPKKVFQVGETIKVLVKDINDT-KVALSLKFPETNP 266

Query: 695 G 695
            
Sbjct: 267 W 267



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++  G V+ V      ++     DG++  S+ + E     + +V  G
Sbjct: 8   QMLEESLKTIRNGEVVDGTVIDVKPDEIILNIGYKADGIITRSEYTNEPNVDLTTLVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+ VK+L   D  G++ L+ K +    G
Sbjct: 68  DTMTVKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
          Length = 277

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 17/243 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG---- 368
           R+DGR    +R I  Q+       GSS    G T+ + VVT G  E        +G    
Sbjct: 14  RVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVT-GPSEPGPRRGGAAGGASG 72

Query: 369 -------TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
                  ++  + +++      ++ +  R G   +R +         +   L        
Sbjct: 73  GAGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKRTLEMQFTLSNTLAATLHTHLFPHS 132

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILS 477
            + I   +   DGS   A +  ++LA +DAG+P++  V     G       + +    L 
Sbjct: 133 QINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYAANDEGADPLL 192

Query: 478 DIS-GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           D++  +E  L  +     G    + A+  + ++       M+       +    IL+++ 
Sbjct: 193 DLNHQEEQELPGLTVATLGESDKVVALVCESRVQISRLEGMLAVGVDGCKQVREILDQVI 252

Query: 537 KVL 539
           K  
Sbjct: 253 KAQ 255


>gi|325857413|ref|ZP_08172468.1| 30S ribosomal protein S1 [Prevotella denticola CRIS 18C-A]
 gi|327314246|ref|YP_004329683.1| 30S ribosomal protein S1 [Prevotella denticola F0289]
 gi|325483123|gb|EGC86103.1| 30S ribosomal protein S1 [Prevotella denticola CRIS 18C-A]
 gi|326945157|gb|AEA21042.1| 30S ribosomal protein S1 [Prevotella denticola F0289]
          Length = 593

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 159 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV     + V +LD
Sbjct: 213 LEKGQILEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVSLDQKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 272 FDEEKKRIALGLKQLTPHPW 291



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 134 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 193

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + +    +  ++ +    
Sbjct: 194 HKALIEAELEAQRKEIISHLEKGQILEGTVKNITSY-----GVFVDLGGVDGLVHITDLS 248

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V++D    V I      +   A            S+    +V    KG+
Sbjct: 249 -WGRVSDPHEVVSLDQKINVVILDFDEEKKRIALGLKQLTPHPWDSLDPNLKVGDHVKGK 307

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D +  K+ 
Sbjct: 308 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDEVEAVILTLDREERKMS 367

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 368 LGIKQLKEDPWETI 381



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 376 DPWETIEVKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTQ 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D +  ++ L  K ++ N    
Sbjct: 436 GADIDVVVLEIDKENRRLSLGHKQLETNPWDE 467



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  + +++ +G V+ +      V+     DG++  S+            +K GD V V +
Sbjct: 43  NKIQEHQVVEGTVISIDKKEVVVNIGYKSDGIIPASEFRY----NPD--LKVGDKVEVYV 96

Query: 675 LDFDDR-GKIKLSMKVV-DQNTGKPI 698
            + +D+ G++ LS K    Q + + I
Sbjct: 97  ENQEDKCGQLVLSHKKARLQKSWENI 122


>gi|303326029|ref|ZP_07356472.1| ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
 gi|302863945|gb|EFL86876.1| ribosomal protein S1 [Desulfovibrio sp. 3_1_syn3]
          Length = 569

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G+V  ++D+GAFV      +GLVHIS++S  R +   S +V  GD V V +L  D ++ 
Sbjct: 291 TGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKK 350

Query: 682 KIKLSMKVVDQNTGK 696
           +I L MK V  N  +
Sbjct: 351 RISLGMKQVRPNPWE 365



 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 74/185 (40%), Gaps = 11/185 (5%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           + +    +  +  + HI+  +    +     +  F P   +   P   +  ++       
Sbjct: 106 DQLEDVQENNRVIKGHIVRRIKGGYTVDIGGVEAFLPGSHVDLRPVPDMDALV------- 158

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
               E    K+N      +      L E   ++      T   E  +I +G+   + ++G
Sbjct: 159 NQEFEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLRT--LEEGQIVQGKAKNITEYG 216

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            FV   G  DGL+HI+ +S +R+    +++  G  + +K+L FD +  K+ L +K +  +
Sbjct: 217 VFVDL-GGLDGLLHITDMSWKRIRHPKEMITMGQELTLKVLSFDRENNKVSLGLKQLVPD 275

Query: 694 TGKPI 698
             + I
Sbjct: 276 PWQDI 280



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  + DFG FV      +GLVH+S+LS ++V   +++ KEG  +  K++    +  +
Sbjct: 465 KGVVTNITDFGLFVEVEEGIEGLVHVSELSGKKVKTPAEIYKEGQEIQAKVIHVSAEERR 524

Query: 683 IKLSMKVVDQNTGK 696
           + LS+K +     +
Sbjct: 525 LGLSIKQIKDEEER 538



 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 95/258 (36%), Gaps = 34/258 (13%)

Query: 462 IAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G  K+  ++ +  D+ G +   H+  M +K       +  M  ++ +  +S +    
Sbjct: 204 IVQGKAKNITEYGVFVDLGGLDGLLHITDMSWKRIRHPKEMITMGQELTLKVLSFD---- 259

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVI 574
                 R    +   + +++ +    +    P           + +      +  G + +
Sbjct: 260 ------RENNKVSLGLKQLVPDPWQDISARFPEGAKCTGKVTNLVDYGAFVELEPGVEGL 313

Query: 575 RGIVEQTGAK--------VNIDDDGTVKIASSSLAEIEAAREM-------IRSITDVPEV 619
             I E +  +        V+  D+  V I      +   +  M          + +    
Sbjct: 314 VHISEMSWTRKLRHPSQMVHTGDEVEVVILGVDGEKKRISLGMKQVRPNPWELVAERYPE 373

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD 678
             + +G +  + +FG F+      DGL+H+S +S  ++V   +++ K GDTV  K+L  D
Sbjct: 374 GTVLEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELYKVGDTVQAKVLTVD 433

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +  K  L +K +  +  
Sbjct: 434 QENEKFTLGVKQLVDDPW 451


>gi|58579307|ref|YP_197519.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
 gi|58617361|ref|YP_196560.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel]
 gi|58416973|emb|CAI28086.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel]
 gi|58417933|emb|CAI27137.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
          Length = 567

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 15/191 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A +  +     I + +    +     +  F P      +   Q++++  + GK 
Sbjct: 135 WQKLEEAAENKEDVEGVIFSSIKCGYTVDIKGVVAFLPASH---VALRQVKDITPLLGKK 191

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
            +  + +   K      G + ++  ++ E   A      ++ + E   I +G+V  +  +
Sbjct: 192 QKFRILKMDKK-----QGNIVVSRKAILEESLADAKSLYLSQLNEG-DIIEGKVKSITKY 245

Query: 634 GAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G F+        G  DGL+HI+ +S  RV   S V   G TV  K++  D +  KI L +
Sbjct: 246 GVFIEIHESPSVGVVDGLLHITDISWSRVNHPSAVFSCGQTVRTKIIKIDRENKKISLGV 305

Query: 688 KVVDQNTGKPI 698
           K ++++    I
Sbjct: 306 KQLEESPWSNI 316



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              +I     V+ ++KG V  + ++G FV      +GLVH+S++S  + +   + +   G
Sbjct: 312 PWSNIEKKYPVDSVHKGIVTSIEEYGIFVELEVGIEGLVHVSEVSWTKSSLPINQLFMRG 371

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + + VK+L  D  + ++ LSMK    N  +
Sbjct: 372 EEIQVKVLSIDTAKSRMSLSMKRCQDNPWE 401



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
              + T    +  I   +V  + + G FV           +GL+ I++LS          
Sbjct: 399 PWEAFTLKYPLGSIVLTKVKNITNLGIFVSFQDETLNSGIEGLIRITELSWSLP--PEAA 456

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           VK    GD++  K+L  + ++ KI L +K ++ + 
Sbjct: 457 VKKYSIGDSIEAKILMINTNKSKIDLGIKQLEYDP 491


>gi|292670964|ref|ZP_06604390.1| 30S ribosomal protein S1 [Selenomonas noxia ATCC 43541]
 gi|292647585|gb|EFF65557.1| 30S ribosomal protein S1 [Selenomonas noxia ATCC 43541]
          Length = 384

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   VE    +V++     V      L    A +E        PE  ++ +G V +++D+
Sbjct: 145 VDQTVEAEIIEVDVQKRRLVLSRRKLLERDRAEKEEAVFSAIEPE--QVVRGTVKRLVDY 202

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G  DGL HIS L+  RV   S+V++ G  + V +   D +  +I LS+K    
Sbjct: 203 GAFIDI-GGVDGLAHISDLAWHRVKHPSEVLEVGQELDVYVKSVDREAKRISLSVKDTLP 261

Query: 693 NTG 695
           +  
Sbjct: 262 DPW 264



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +               +G+++K+ DFGAF+      DGL+ + +L+ +R+ +  + V  G
Sbjct: 262 DPWVEKAAQYAEGDFIEGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTG 321

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           D V VK+L  D  R +I LS+
Sbjct: 322 DVVLVKVLRIDTKRKRISLSI 342


>gi|222151971|ref|YP_002561131.1| S1 RNA binding domain protein [Macrococcus caseolyticus JCSC5402]
 gi|222121100|dbj|BAH18435.1| S1 RNA binding domain protein [Macrococcus caseolyticus JCSC5402]
          Length = 726

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            I      + +G+G   +  I+        +  +D    +  S +  IE  R+ ++    
Sbjct: 599 KIDVHSTADELGVGAPTLEDIITALMAPGRDPREDFETPLLKSDVLSIEDLRKGMK---- 654

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                    G V  V+DFGAFV     +DGLVHIS+LS   V   +DVV  GD V V + 
Sbjct: 655 -------LSGTVRNVVDFGAFVDIGVKQDGLVHISKLSDRFVKHPTDVVSVGDIVEVWIE 707

Query: 676 DF-DDRGKIKLSMKVVD 691
           D   D+GK+ L+M  VD
Sbjct: 708 DIMHDKGKVALTMINVD 724


>gi|162448175|ref|YP_001621307.1| Tex protein-related transcription accessory protein [Acholeplasma
           laidlawii PG-8A]
 gi|161986282|gb|ABX81931.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Acholeplasma laidlawii PG-8A]
          Length = 724

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 19/179 (10%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S+ I+             +  E+ K L+ S   +G+ + R+    I  +Q+   +     
Sbjct: 556 SDEILDQTS--IHPESYQLAREVMKKLNISSEDIGKPSIRLWTDNIDREQVARELHTDKY 613

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI---YKGQVVK 629
            +  I++               +A       + A+ +++S     E  K+    +G V  
Sbjct: 614 TLDLILDAF-------------VAPMRDPRDDYAQPILKSDVLSIEDLKVGMELEGTVRN 660

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V DFGAFV      DGLVHIS+LS + V    DVV  G  V V +L+ D D+G++ L+M
Sbjct: 661 VTDFGAFVDVGLKNDGLVHISKLSNKFVKHPKDVVSVGQIVTVWVLNIDRDKGQVGLTM 719


>gi|325270523|ref|ZP_08137123.1| 30S ribosomal protein S1 [Prevotella multiformis DSM 16608]
 gi|324987099|gb|EGC19082.1| 30S ribosomal protein S1 [Prevotella multiformis DSM 16608]
          Length = 593

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 159 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV     + V +LD
Sbjct: 213 LEKGQILEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVSLDQKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 272 FDEEKKRIALGLKQLTPHPW 291



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 134 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 193

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + +    +  ++ +    
Sbjct: 194 HKALIEAELEAQRKEIISHLEKGQILEGTVKNITSY-----GVFVDLGGVDGLVHITDLS 248

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V++D    V I      +   A            S+    +V    KG+
Sbjct: 249 -WGRVSDPHEVVSLDQKINVVILDFDEEKKRIALGLKQLTPHPWDSLDPNLKVGDHVKGK 307

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D +  K+ 
Sbjct: 308 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDEVEAVILTLDREERKMS 367

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 368 LGIKQLKEDPWETI 381



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 376 DPWETIEVKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTQ 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D +  ++ L  K ++ N    
Sbjct: 436 GADIDVIVLEIDKENRRLSLGHKQLETNPWDE 467



 Score = 41.1 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+        +S  ++  A +   +       +++ +G V+ V      V+     DG++
Sbjct: 19  DEFENGAKNEASKDDLTKAYDETLNKIQE---HQVVEGTVISVDKKEVVVNIGYKSDGII 75

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV-DQNTGKPI 698
             S+            +K GD V V + +  D RG++ LS K    Q + + I
Sbjct: 76  PASEFRY----NPE--LKPGDKVEVYVENQEDKRGQLVLSHKKARLQKSWENI 122


>gi|152994801|ref|YP_001339636.1| RNA-binding S1 domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835725|gb|ABR69701.1| RNA binding S1 domain protein [Marinomonas sp. MWYL1]
          Length = 720

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++              A+ +      +  +     +G V  V  FGAFV     +DG
Sbjct: 615 DILNELAKPGRDPRPEFRYASFDHSVQKLEDVQEGMTLEGVVTNVAAFGAFVDLGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           L+HISQL+   V    D+V+ G  V V +L+ D  R +I L
Sbjct: 675 LIHISQLADRFVKDPRDLVRVGQVVKVTVLEVDVQRKRIAL 715


>gi|121594810|ref|YP_986706.1| 30S ribosomal protein S1 [Acidovorax sp. JS42]
 gi|120606890|gb|ABM42630.1| SSU ribosomal protein S1P [Acidovorax sp. JS42]
          Length = 561

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    ++++     K +   V +   K N      V ++  ++ E     +  + +  + 
Sbjct: 136 IDTRPVKDLTPYENKTLEFKVIKLDRKRN-----NVVLSRRAVVEASMGEDRAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   I  G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L F
Sbjct: 191 EGA-IVNGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTAGQEITAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L+ D D+ +
Sbjct: 282 GKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVSLGDEVEVMVLEIDEDKRR 341

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 342 ISLGMKQCKANPWQE 356



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAQDTKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS            K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDP 440



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 439 DPFTTFVTVNDKGQTVTGKVKTVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEG 498

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 499 DEVTAVVVNVDRKTRNIQLSIKQKD 523


>gi|317505519|ref|ZP_07963437.1| 30S ribosomal protein S1 [Prevotella salivae DSM 15606]
 gi|315663432|gb|EFV03181.1| 30S ribosomal protein S1 [Prevotella salivae DSM 15606]
          Length = 593

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQK--KEIISH 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVSLDQKINVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD D+ +I L +K +  +  
Sbjct: 269 FDEDKKRIALGLKQLTPHPW 288



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  +VL  +   +  +      + +    +  +I +    
Sbjct: 191 HKALIEAELEAQKKEIISHLEKGQVLEGTVKNITSY-----GVFVDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V++D    V I      +   A            +++   +V    KG+
Sbjct: 246 -WGRVSDPHEVVSLDQKINVVILDFDEDKKRIALGLKQLTPHPWDALSPDLKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +  GD V   +L  D D  K+ 
Sbjct: 305 VVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLHVGDEVEAVILTLDRDERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 365 LGIKQLKEDPWESI 378



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI     +   +  +V    +FG FV      DGL+HIS LS  ++V   S+    
Sbjct: 373 DPWESIETKYPIGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTSV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +LD D +  ++ L  K ++ N  
Sbjct: 433 GAEIEVVVLDIDKENRRLSLGHKQLEDNPW 462



 Score = 37.6 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+      AS S  ++E A +   +       +++ +G V+ +      V+     DG++
Sbjct: 16  DEFENGSSASVSKQDLEKAYDETLNKIQE---HQVVEGTVIALDKKEVVVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V + +  D +G++ LS +
Sbjct: 73  PASEFRY----NPD--LKVGDKVEVYVENQEDKKGQLVLSHR 108


>gi|313895526|ref|ZP_07829082.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312975652|gb|EFR41111.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 55

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 4  VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF 56
          + + EIE  GR + +E G++A+Q++GA L  YG+TVVL T     + ++G DF
Sbjct: 1  MQSFEIELGGRNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDF 53


>gi|228919179|ref|ZP_04082553.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228840490|gb|EEM85757.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 722

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 137/350 (39%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L+ L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLNSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|149183233|ref|ZP_01861678.1| hypothetical protein BSG1_17276 [Bacillus sp. SG-1]
 gi|148849066|gb|EDL63271.1| hypothetical protein BSG1_17276 [Bacillus sp. SG-1]
          Length = 140

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITNFGAFVELPEGATGLVHISEVADNYVKDINEHLKVGDEVTVKVINV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EKDGKIGLSIR 74


>gi|86137652|ref|ZP_01056229.1| S1 RNA binding domain protein [Roseobacter sp. MED193]
 gi|85825987|gb|EAQ46185.1| S1 RNA binding domain protein [Roseobacter sp. MED193]
          Length = 785

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G  V 
Sbjct: 641 ETMQDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEVVKTGQVVK 700

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V + + D  R +I L+M+
Sbjct: 701 VTVTEVDVARKRIALTMR 718


>gi|57239341|ref|YP_180477.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
 gi|57161420|emb|CAH58344.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
          Length = 565

 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 15/191 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A +  +     I + +    +     +  F P      +   Q++++  + GK 
Sbjct: 133 WQKLEEAAENKEDVEGVIFSSIKCGYTVDIKGVVAFLPASH---VALRQVKDITPLLGKK 189

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
            +  + +   K      G + ++  ++ E   A      ++ + E   I +G+V  +  +
Sbjct: 190 QKFRILKMDKK-----QGNIVVSRKAILEESLADAKSLYLSQLNEG-DIIEGKVKSITKY 243

Query: 634 GAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G F+        G  DGL+HI+ +S  RV   S V   G TV  K++  D +  KI L +
Sbjct: 244 GVFIEIHESPSVGVVDGLLHITDISWSRVNHPSAVFSCGQTVRTKIIKIDRENKKISLGV 303

Query: 688 KVVDQNTGKPI 698
           K ++++    I
Sbjct: 304 KQLEESPWSNI 314



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              +I     V+ ++KG V  + ++G FV      +GLVH+S++S  + +   + +   G
Sbjct: 310 PWSNIEKKYPVDSVHKGIVTSIEEYGIFVELEVGIEGLVHVSEVSWTKSSLPINQLFMRG 369

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + + VK+L  D  + ++ LSMK    N  +
Sbjct: 370 EEIQVKVLSIDTAKSRMSLSMKRCQDNPWE 399



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
              + T    +  I   +V  + + G FV           +GL+ I++LS          
Sbjct: 397 PWEAFTLKYPLGSIVLTKVKNITNLGIFVSFQDETLNSGIEGLIRITELSWSLP--PEAA 454

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           VK    GD++  K+L  + ++ KI L +K ++ + 
Sbjct: 455 VKKYSIGDSIEAKILMINTNKSKIDLGIKQLEYDP 489


>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Aspergillus fumigatus Af293]
 gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus fumigatus Af293]
          Length = 269

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 4/160 (2%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E ++   +    
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVH-GPAEGKRGDATGGAA 70

Query: 370 QRNDFMMHY--NFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                ++    N    A  +  R  G   R+      + R A    L        T+ I 
Sbjct: 71  GSAGAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  +DGS   A V   +LAL+DAG+P+   ++    G+
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGM 170



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 37/229 (16%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           S G+   + G T ++ +V      K                E    +    G   RR + 
Sbjct: 37  SSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVDVNIAGFAGVDRRRRAG 96

Query: 84  PTEN-EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
            ++     I+ ++  + +          +   + ++V+  D   S    ++ A + AL+ 
Sbjct: 97  GSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADG--SLLAAAVNACTLALVD 154

Query: 141 SGLPFEGPVVGAQVDYINGQYVL-NPRLD----------EDQGSLDLFVSGTQDAV---- 185
           +G+P  G +             L +PR D           ++  L     GT  A+    
Sbjct: 155 AGIPMPGLLSACTSGMSGSASTLRDPRNDFLDPLLDLSLPEEQELPFLTVGTTTAIPVGE 214

Query: 186 --------------LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
                         ++++ + +    + +L   I G  + + ++E + K
Sbjct: 215 DAMDDDDEDMKVSMMVMDSKVHCTYLETMLAVGIDGCKQIREILEGVIK 263


>gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
          Length = 394

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+V+   VE+      ++ +    I S    E E   +    +    
Sbjct: 139 ISTDYIEDFSDYEGRVLELKVEE------LEPEKNRVILSRKAVEAEENEKKKAELLQSI 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  GDTV VK+   
Sbjct: 193 KAGDVIEGKVARLTNFGAFIDL-GGVDGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSV 251

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           + D  ++ LS+K    +  + I
Sbjct: 252 EQDSERVSLSIKDTLPSPFETI 273



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G+V+++  FGAFV       GLVHIS++S + +    +V++ G TV VK+L  + +
Sbjct: 281 DIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPE 340

Query: 680 RGKIKLSMKVVDQN 693
             +I LS+K  + +
Sbjct: 341 EERISLSIKAANPD 354



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V ++ D    VH  G + +G++ ISQLST  V   ++VVK 
Sbjct: 5   EFNESMINDIKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKV 64

Query: 667 GDTV--WVKLLDFDDRGKIK---LSMKVVDQN 693
           GD +  +V  ++ D+  +     LS + +++ 
Sbjct: 65  GDEIGAYVTKIEVDEENETGSYILSKRKLEEE 96


>gi|319892466|ref|YP_004149341.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 394

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+V+   VE+      ++ +    I S    E E   +    +    
Sbjct: 139 ISTDYIEDFSDYEGRVLELKVEE------LEPEKNRVILSRKAVEAEENEKKKAELLQSI 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  GDTV VK+   
Sbjct: 193 KAGDVIEGKVARLTNFGAFIDL-GGVDGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSV 251

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           + D  ++ LS+K    +  + I
Sbjct: 252 EQDSERVSLSIKDTLPSPFETI 273



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G+V+++  FGAFV       GLVHIS++S + +    +V++ G TV VK+L  + +
Sbjct: 281 DIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPE 340

Query: 680 RGKIKLSMKVVDQN 693
             +I LS+K  + +
Sbjct: 341 EERISLSIKAANPD 354



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V ++ D    VH  G + +G++ ISQLST  V   ++VVK 
Sbjct: 5   EFNESMINDIKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKV 64

Query: 667 GDTV--WVKLLDFDDRGKIK---LSMKVVDQN 693
           GD +  +V  ++ D+  +     LS + +++ 
Sbjct: 65  GDEIGAYVTKIEVDEENETGSYILSKRKLEEE 96


>gi|224533971|ref|ZP_03674555.1| ribosomal protein S1 [Borrelia burgdorferi CA-11.2a]
 gi|224512807|gb|EEF83174.1| ribosomal protein S1 [Borrelia burgdorferi CA-11.2a]
          Length = 551

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
              S+ D  +++ I KG+VVK++ FGA +       G +HIS  S  R V    +++K G
Sbjct: 261 PWDSVDDKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLG 320

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V VK+L+ D +  KI L +K +++N  +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQINENPWE 350



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437


>gi|16330162|ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
 gi|2500385|sp|P73530|RS1A_SYNY3 RecName: Full=30S ribosomal protein S1 homolog A
 gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
          Length = 328

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 183 RALVERKMNGLEVAQVVVGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 241

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 242 NDEIKVMIIDLDAERGRISLSTKQLEPEPG 271



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 32  DIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEVLQPNETREFFILTDENE 91

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 92  DGQLTLSIRRIE 103


>gi|312148223|gb|ADQ30882.1| ribosomal protein S1 [Borrelia burgdorferi JD1]
          Length = 551

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  R V    +++K G
Sbjct: 261 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLG 320

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
             V VK+L+ D    KI L +K +++N  +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQINENPWE 350



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVGSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437


>gi|223889064|ref|ZP_03623653.1| ribosomal protein S1 [Borrelia burgdorferi 64b]
 gi|223885313|gb|EEF56414.1| ribosomal protein S1 [Borrelia burgdorferi 64b]
          Length = 551

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  R V    +++K G
Sbjct: 261 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLG 320

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
             V VK+L+ D    KI L +K +++N  +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQINENPWE 350



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVGSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437


>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus fumigatus A1163]
          Length = 269

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 4/160 (2%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E ++   +    
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVH-GPAEGKRGDATGGAA 70

Query: 370 QRNDFMMHY--NFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                ++    N    A  +  R  G   R+      + R A    L        T+ I 
Sbjct: 71  GSAGAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  +DGS   A V   +LAL+DAG+P+   ++    G+
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGM 170



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 8/136 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           S G+   + G T ++ +V      K                E    +    G   RR + 
Sbjct: 37  SSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVDVNIAGFAGVDRRRRAG 96

Query: 84  PTEN-EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
            ++     I+ ++  + +          +   + ++V+  D   S    ++ A + AL+ 
Sbjct: 97  GSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADG--SLLAAAVNACTLALVD 154

Query: 141 SGLPFEGPVVGAQVDY 156
           +G+P  G +       
Sbjct: 155 AGIPMPGLLSACTSGM 170


>gi|260220854|emb|CBA28836.1| 30S ribosomal protein S1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 587

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +  S  A +EA+    R+      +   + +G V  + ++GAFV   G  DGL+
Sbjct: 189 DRKRNNVVLSRRAVVEASMGEERAKLMHTLKEGSVVQGVVKNITEYGAFVDL-GGIDGLL 247

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           HI+ ++  RV   S+VV  G  +  K+L FD ++ ++ L +K +  +  
Sbjct: 248 HITDMAWRRVRHPSEVVTAGQEITAKILKFDTEKNRVSLGLKQMGDDPW 296



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L+ D D+ +
Sbjct: 311 GKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKIVALGDEVEVMVLEIDEDKRR 370

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N  + 
Sbjct: 371 ISLGMKQCKANPWQE 385



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 362 LEIDEDKRRISLGMKQCKAN----PWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGID 417

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     +T+    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 418 GLVHLSDLSWNESGETAVREFKKGQEVEAIVLAVDVDRERISLGIKQLDSDP 469



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 468 DPFTTFVSVNDKGQTVTGKVKTVDAKGAEIDLGDDILGYLRASEISRDRVEDARNVLKEG 527

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 528 DEVTAVVVNVDRKTRNIQLSIKAKD 552


>gi|255994887|ref|ZP_05428022.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saphenum ATCC 49989]
 gi|255993600|gb|EEU03689.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
           saphenum ATCC 49989]
          Length = 703

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E    I D  +     +G +V++ ++GAF+      DGL+HIS++S  RV   + V+  G
Sbjct: 569 EPWSIIDDKYKAGDNVEGDIVQIKEYGAFLELEPGLDGLIHISEISHSRVENINSVLHIG 628

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D V  K+L+ D DR +I LS+K +     +
Sbjct: 629 DNVEAKILEIDKDRRRISLSIKALIDPPEQ 658



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 13/214 (6%)

Query: 488 HMDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            +  KV  TD G     +        +    +  AL   +  ++ ++  +   +  +  +
Sbjct: 371 EIQAKVLKTDDGDGSILLSRRKMEASVHWAELEDALNNDETVKVDVVRAVKSGVIANYKE 430

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  ++     +     +G                + +D      I S    + E 
Sbjct: 431 VSGFIPLSQLSERFIEDASEFVGQT---------MEAKVIRVDQKLGKAIFSPKQLQKEE 481

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             + ++ +     V    +G+V++  ++GAFV   G  DGL+HIS++S  ++   S+V+ 
Sbjct: 482 KNKRLQELWKKLNVGDDIEGKVMRFTEYGAFVDI-GGVDGLLHISEISWGKLKHPSEVLT 540

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GDT+ VK+L  + ++GKI L  K         I
Sbjct: 541 VGDTINVKILSLNPEKGKISLGYKQNMPEPWSII 574



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            ++  E+    + I      P+  +I +G +  + D    V+    +DG++  S+++ E 
Sbjct: 299 ETTGNEMLELMDEIEKSMKSPKTGEIVEGVIDAINDKEIVVNLGCKKDGIIPNSEVALEE 358

Query: 657 VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
                D+   GD +  K+L  DD  G I LS + ++
Sbjct: 359 GQTIRDLFSVGDEIQAKVLKTDDGDGSILLSRRKME 394


>gi|218249762|ref|YP_002374655.1| ribosomal protein S1 [Borrelia burgdorferi ZS7]
 gi|226321962|ref|ZP_03797487.1| ribosomal protein S1 [Borrelia burgdorferi Bol26]
 gi|218164950|gb|ACK75011.1| ribosomal protein S1 [Borrelia burgdorferi ZS7]
 gi|226232552|gb|EEH31306.1| ribosomal protein S1 [Borrelia burgdorferi Bol26]
          Length = 551

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  R V    +++K G
Sbjct: 261 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLG 320

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
             V VK+L+ D    KI L +K +++N  +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQINENPWE 350



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437


>gi|60729648|pir||JC7997 nucleolar protein, pNO40, short form - human
          Length = 217

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAF+   G  + GLV  + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 2   VTDYGAFIKIPGCRKQGLVRRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 61

Query: 686 SMKVVDQNTGKPI 698
           SMKVV+Q TGK +
Sbjct: 62  SMKVVNQGTGKDL 74


>gi|312865889|ref|ZP_07726110.1| Tex-like protein N-terminal domain protein [Streptococcus downei
           F0415]
 gi|311098293|gb|EFQ56516.1| Tex-like protein N-terminal domain protein [Streptococcus downei
           F0415]
          Length = 710

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   +G+G + ++ I+        ++ DD         + E++           
Sbjct: 582 ALDVAQMAGDLGLGAETLKDIIADLLKPGRDLRDDFEAPTLRQDVLELK----------- 630

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 631 DLEVGQKLEGTVRNVVDFGAFVDVGVHEDGLIHISEMSKNFVKHPSQVVSVGDIVTVWVS 690

Query: 676 DFD-DRGKIKLSM 687
             D +R K+ LS+
Sbjct: 691 KVDLNREKLNLSL 703


>gi|302346323|ref|YP_003814621.1| Tex-like protein N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302150473|gb|ADK96734.1| Tex-like protein N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 910

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQLS   V   + V++    V V++++ D  R +I
Sbjct: 842 GIVTNITNFGAFVDIGVHQDGLVHISQLSDRFVTDPTQVIRLHQHVRVRVVEVDMRRKRI 901

Query: 684 KLSMKVVDQ 692
            LSMK + Q
Sbjct: 902 ALSMKNIKQ 910


>gi|154483595|ref|ZP_02026043.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC
           27560]
 gi|149735505|gb|EDM51391.1| hypothetical protein EUBVEN_01299 [Eubacterium ventriosum ATCC
           27560]
          Length = 365

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 14/132 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
               R +   G +V   I E  G K+         ++         A    +    V   
Sbjct: 229 VGNPRKLFKPGDEVTAFIKEINGDKI--------ALSLKFEDTNPWANASEKFAVGV--- 277

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
             +  G+V ++ DFGAFV      D L+H+SQ++   V K SD +  G  +  K++DF+ 
Sbjct: 278 --VVTGKVARMTDFGAFVEIEPGVDALLHVSQIANHHVDKPSDELTIGQEIEAKIVDFNE 335

Query: 679 DRGKIKLSMKVV 690
           +  KI LSMK +
Sbjct: 336 EEKKISLSMKAL 347



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           AE EAA+   +++ +  EV +   G V  V+DFGAF+   GA DGL+HIS++S  RV   
Sbjct: 177 AEKEAAK---KALFEKIEVGQTVTGVVKSVVDFGAFIDIGGA-DGLLHISEMSWGRVGNP 232

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
             + K GD V   + + +   KI LS+K  D N  
Sbjct: 233 RKLFKPGDEVTAFIKEINGD-KIALSLKFEDTNPW 266



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G+V+ V    A ++     DG++  ++ S   V   + V+  G
Sbjct: 8   QMLDETFKTIHNGEVLEGKVISVRPDEAVLNIGYKADGILTSNEYSNTPVD-LTTVISVG 66

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVV 690
           D + VK+L   D  G++ LS K +
Sbjct: 67  DELTVKVLKVNDGEGQVALSYKKL 90


>gi|15594472|ref|NP_212261.1| 30S ribosomal protein S1 [Borrelia burgdorferi B31]
 gi|2688008|gb|AAC66510.1| ribosomal protein S1 (rpsA) [Borrelia burgdorferi B31]
          Length = 553

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  R V    +++K G
Sbjct: 263 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLG 322

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
             V VK+L+ D    KI L +K +++N  +
Sbjct: 323 QIVEVKILEIDKENQKISLGIKQINENPWE 352



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 158 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 217

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 218 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 267



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 350 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 409

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 410 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 439


>gi|56418591|ref|YP_145909.1| hypothetical protein GK0056 [Geobacillus kaustophilus HTA426]
 gi|297528431|ref|YP_003669706.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
 gi|56378433|dbj|BAD74341.1| polyribonucleotide nucleotidyltransferase [Geobacillus kaustophilus
           HTA426]
 gi|297251683|gb|ADI25129.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
          Length = 132

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V+VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDMVYVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
              GKI LS++      
Sbjct: 64  GQDGKIGLSIRKAKDTP 80


>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
          Length = 218

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 16/219 (7%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
            ++R +  +  +L R  GS +F +G+T  +  V  G  E +     +     +   +  N
Sbjct: 6   NSIRALKCEQSVLSRADGSVMFSQGNTVVMASV-YGPLEAK-----IQKELSDRMYIELN 59

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P       + G P   E G  +L +   + ++         + I  +  +  G+   A
Sbjct: 60  YKP-------KTGMPGVAERGKEKLIKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAA 112

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           ++    LAL+D+G+P+   VA +    + D  D IIL              F  A     
Sbjct: 113 SINAVCLALLDSGLPLQCLVAAVTC--LVDKKDRIILDPCISTVKEGYKAMFTFAFDSQK 170

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
              + +    G +   +   A+   ++    I +   + 
Sbjct: 171 Y-NLILSHCEGQVPYQLFQKAMVLCQKASHVIFDFYRQA 208



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 24/217 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R LK E   ++R +DG+V+ + G TVV+A+V         K+  D   + +NY+ +T   
Sbjct: 9   RALKCEQSVLSR-ADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNYKPKT--- 64

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                        P   E    ++I  +   +        T V I V +     +    S
Sbjct: 65  -----------GMPGVAERGKEKLIKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAAS 113

Query: 131 MVAASAALMLSGLPFEGPVVGAQ--VDYINGQYVLNP---RLDEDQGSLDLFVSGTQDAV 185
           + A   AL+ SGLP +  V      VD  + + +L+P    + E   ++  F   +Q   
Sbjct: 114 INAVCLALLDSGLPLQCLVAAVTCLVDKKD-RIILDPCISTVKEGYKAMFTFAFDSQKYN 172

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
           L++     Q+   +   A++        + +   +  
Sbjct: 173 LILSHCEGQVPYQLFQKAMVLCQKASHVIFDFYRQAV 209


>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
 gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
          Length = 298

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 9/160 (5%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G    E      +G    
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVH-GPA--EGKRSETAGATGA 71

Query: 373 DFMMHYNFLPCATGEVSRM-----GAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +  N    A  +  +      G   R+       L R A  P +        T+ I 
Sbjct: 72  VISVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIH 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 132 VSVLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGM 171



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA-VGKIPGGYLRRE 81
           S G+   + G T VL TV      K  +        ++V      +A V +         
Sbjct: 37  SSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVISVVVNLAGFANVDRKKKSAAGGG 96

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
               +    ++ +I  + +P        ++   + ++V+  D   S     + A + AL+
Sbjct: 97  GGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVSVLSSDG--SLFAACLNACTLALV 154

Query: 140 LSGLPFEGPVVGAQVDY 156
            +G+P  G +    V  
Sbjct: 155 DAGIPMPGLLCACTVGM 171


>gi|225181427|ref|ZP_03734870.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167825|gb|EEG76633.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 133

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V  +  FGAFV       GLVHIS+++   V   ++ +++ D V VK+L  D  G
Sbjct: 8   IVEGVVTGITHFGAFVQLANGETGLVHISEVADSYVKDINEHLQKKDKVQVKVLSVDGNG 67

Query: 682 KIKLSMKVV 690
           KI LS+K V
Sbjct: 68  KIGLSIKQV 76


>gi|299142654|ref|ZP_07035784.1| ribosomal protein S1 [Prevotella oris C735]
 gi|298575869|gb|EFI47745.1| ribosomal protein S1 [Prevotella oris C735]
          Length = 593

 Score = 83.8 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK I   V     K+N +    V    + +     A++  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTIEFKV----VKINQEFRNVVVSHKALIEAELEAQK--KEIISH 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVALDQKINVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD D+ +I L +K +  +  
Sbjct: 269 FDEDKKRIALGLKQLTPHPW 288



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+    
Sbjct: 373 DPWEAIESKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +LD D +  ++ L  K +++N  
Sbjct: 433 GAEIDVVVLDIDKENRRLSLGHKQLEENPW 462



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS-----------GITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V                 +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTIEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  +VL  +   +  +      + +    +  +I +    
Sbjct: 191 HKALIEAELEAQKKEIISHLEKGQVLEGTVKNITSY-----GVFVDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            +++   +V    KG+
Sbjct: 246 -WGRVSDPHEVVALDQKINVVILDFDEDKKRIALGLKQLTPHPWDALSPDLKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +  GD V   +L  D D  K+ 
Sbjct: 305 VVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMHVGDEVEAVILTLDRDERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 365 LGIKQLKEDPWEAI 378



 Score = 38.7 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+      A+ S  ++E A +   +       +++ +G V+ +      V+     DG++
Sbjct: 16  DEFENGSSANVSKQDLEKAYDETLNKIQE---HQVVEGTVISLDKKEVVVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V + +  D +G++ LS +
Sbjct: 73  PASEFRY----NPD--LKVGDKVEVYVENQEDKKGQLVLSHR 108


>gi|328956576|ref|YP_004373962.1| hypothetical protein CAR_c01950 [Carnobacterium sp. 17-4]
 gi|328672900|gb|AEB28946.1| hypothetical protein CAR_c01950 [Carnobacterium sp. 17-4]
          Length = 163

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G V  + +FGAF+     + GLVHIS++S   +    +V+K G+ V VK++  
Sbjct: 4   EVGEKVTGTVSGITNFGAFIDLGDRKTGLVHISEVSDSFIKDIKEVLKVGEQVTVKVMSI 63

Query: 678 DDRGKIKLS-MKVVDQN 693
            D GKI LS  + VD+ 
Sbjct: 64  GDDGKIGLSIRRAVDKP 80


>gi|300813325|ref|ZP_07093678.1| S1 RNA binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512563|gb|EFK39710.1| S1 RNA binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 148

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            ++DFGAFV      DGL+H+SQ+  E + K  D ++ G  V VK+++ D +  KI LS+
Sbjct: 73  NILDFGAFVRLEEGVDGLLHVSQICREHIEKPQDRLEIGQEVEVKVIEIDQENKKISLSI 132

Query: 688 KVVDQN 693
           K + + 
Sbjct: 133 KALLEP 138



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            DGLVHIS+LS  RV   S+VV  GD V V++L  D+   +I L +K   +   
Sbjct: 1   IDGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEKDRIALGLKQTTEKPW 54


>gi|225389317|ref|ZP_03759041.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme
           DSM 15981]
 gi|225044618|gb|EEG54864.1| hypothetical protein CLOSTASPAR_03064 [Clostridium asparagiforme
           DSM 15981]
          Length = 660

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I  G+V ++ DFGAF+      D L+H+SQ+S E V K SDV++ G  +  +++DF++  
Sbjct: 570 IVVGRVARMTDFGAFIELEPGVDALLHVSQISREHVEKPSDVLRIGQEIEARVVDFNEND 629

Query: 681 GKIKLSMKVV 690
            KI LS+K +
Sbjct: 630 HKISLSIKAL 639



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 109/307 (35%), Gaps = 39/307 (12%)

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLR----IVSEITESDGSSSMATVCGSSLALMDAGV 453
           E  H R+A ++   +L +  +    +R    +  ++ E      + ++            
Sbjct: 282 EEVHTRMAEQSFAELLKEEEESTKPIRTGEIVTGQVIEVSKDEIILSI------------ 329

Query: 454 PISKPVAGIAMGLVKDGDDFI--ILSDISGDEDHLGHMDFKVAGTDSGI--TAMQMDMKI 509
                 AG     V   D++      D++        M+ KV   + G+   ++      
Sbjct: 330 ------AGNKSEGVITRDEYSNDNNVDLTTKVQVGDEMEAKVIKLNDGVGMVSLSYKRMA 383

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
                  +  A +  +     +   +   LS        F P      +     +++   
Sbjct: 384 ADRGNRRLEEAFENQEVLTAKVTQVLDGGLSVEVEGARVFIPASL---VSDSYEKDLSKY 440

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQVV 628
            G+ I  I+ +   K         +I     A + A + +M   +    +   +  G V 
Sbjct: 441 AGQDIEFIITEFNPK-------RRRIIGDRKALLVAQKAKMKEELFSRIQPGDVTDGVVK 493

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            V DFGAF+   GA DGL+HIS++S  RV     V K G+ V V + D     KI LS+K
Sbjct: 494 NVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKTGEQVRVLIKDI-QGEKIALSLK 551

Query: 689 VVDQNTG 695
             + N  
Sbjct: 552 FPEANPW 558



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 84/240 (35%), Gaps = 26/240 (10%)

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           + +G    I+S  + + +    +  K +    G  +  ++       E  +  A   ++ 
Sbjct: 163 LSEGQKLCIVSQTTFNYNKFKELVEKFS--KKGYDSSVLNTICNATQERQVEAARIASQV 220

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNV----IGMGGKVIRGI 577
             + ++       ++   ++     +          + PD + +V    I  G    + I
Sbjct: 221 EAMIVIGGRHSSNTQKLYEICLKECKNTFYIQTLGDLDPDSVSSVRSVGITAGASTPKKI 280

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +E+   ++             +        +     T      +I  GQV++V      +
Sbjct: 281 IEEVHTRM-------------AEQSFAELLKEEEESTKPIRTGEIVTGQVIEVSKDEIIL 327

Query: 638 HFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
              G + +G++   + S +     +  V+ GD +  K++  +D  G + LS K +  + G
Sbjct: 328 SIAGNKSEGVITRDEYSNDNNVDLTTKVQVGDEMEAKVIKLNDGVGMVSLSYKRMAADRG 387


>gi|124023909|ref|YP_001018216.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
 gi|123964195|gb|ABM78951.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9303]
          Length = 367

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 239 RALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNV 297

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 298 NDQMKVMIIDLDAERGRISLSTKALEPEPG 327



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV+  G+     ++ +
Sbjct: 85  KPGDIVNGTVFALESKGAMIDIGAKTAAFMPLQEVSINRVEGLSDVLLPGEIREFFIMSE 144

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 145 ENEDGQLSLSIRRIEYQRAWE 165


>gi|33863935|ref|NP_895495.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
 gi|33635519|emb|CAE21843.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
           MIT 9313]
          Length = 367

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 239 RALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNV 297

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 298 NDQMKVMIIDLDAERGRISLSTKALEPEPG 327



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV+  G+     ++ +
Sbjct: 85  KPGDIVNGTVFALESKGAMIDIGAKTAAFMPLQEVSINRVEGLSDVLLPGEIREFFIMSE 144

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 145 ENEDGQLSLSIRRIEYQRAWE 165


>gi|150014988|ref|YP_001307242.1| hypothetical protein Cbei_0096 [Clostridium beijerinckii NCIMB
           8052]
 gi|149901453|gb|ABR32286.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 136

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V+ + +FGAF+   G + GLVHIS+++   V    + + E D V VK++  DD G
Sbjct: 8   IVEGTVINITNFGAFIEVEG-KTGLVHISEVADSYVKDIREHLSEQDKVKVKVISIDDNG 66

Query: 682 KIKLSMKVVD 691
           KI LS+K  +
Sbjct: 67  KISLSIKQAN 76


>gi|326803018|ref|YP_004320836.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650457|gb|AEA00640.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 152

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              EV +   G+V  ++ FG FV       GLVHIS++S   +   +D +++GD V   +
Sbjct: 1   MTVEVGEKVTGKVTGIVKFGVFVDLGDGNSGLVHISEISDSYIKDINDYLQKGDEVTAIV 60

Query: 675 LDFDDRGKIKLSMKVVD-QNTGKP 697
                 GKI LSMK    QN  +P
Sbjct: 61  TKIQPDGKIALSMKDAKGQNQAEP 84


>gi|288802812|ref|ZP_06408249.1| S1 RNA binding domain protein [Prevotella melaninogenica D18]
 gi|288334629|gb|EFC73067.1| S1 RNA binding domain protein [Prevotella melaninogenica D18]
          Length = 696

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQLS   V   + V++    V V++++ D  R +I
Sbjct: 628 GIVTNITNFGAFVDIGVHQDGLVHISQLSDRFVTDPTQVIRLHQHVRVRVVEVDMRRKRI 687

Query: 684 KLSMKVVDQ 692
            LSMK + Q
Sbjct: 688 ALSMKNIKQ 696


>gi|294675912|ref|YP_003576527.1| S1 RNA binding domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294474732|gb|ADE84120.1| S1 RNA binding domain protein [Rhodobacter capsulatus SB 1003]
          Length = 769

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +     +G V  V  FGAFV     +DGLVHISQL+   V    +VVK GD V 
Sbjct: 640 EDIKDLKPGMQLEGTVTNVAAFGAFVDIGVHQDGLVHISQLADRFVKDPHEVVKAGDVVK 699

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V++ + D  R +I L+M+
Sbjct: 700 VRVTEVDVARKRIALTMR 717


>gi|257456237|ref|ZP_05621434.1| tex protein [Treponema vincentii ATCC 35580]
 gi|257446323|gb|EEV21369.1| tex protein [Treponema vincentii ATCC 35580]
          Length = 800

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 3/154 (1%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +       +  +    + +   +    +    I EQT +  +I ++             
Sbjct: 571 PENYPAAEVIYQIVRKNEPVTKEVRTELQEKYQIGEQTVS--DIIEELKKPNRDPREDCP 628

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +   +    + +  ++    KG++  V+DFGAFV        L+HIS++S   V+   + 
Sbjct: 629 KPIMQQGVLLFEDLKLGMTVKGKIKNVVDFGAFVDLGIKETALLHISEMSDSFVSDPLEA 688

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           VK GD V  +++  D+ R +I LS K      GK
Sbjct: 689 VKVGDIVECRIIALDEARRRISLSRKSESGVQGK 722


>gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
 gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
          Length = 392

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ I+  VE+      +D +    I S    E         S+ D  
Sbjct: 138 ISTDFIEDFSDFEGQTIKIKVEE------LDPENNRVILSRKAVEQAENEVKKASLLDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               + +G+V ++ +FGAFV   G  DGLVH+S+LS + V    +VV  GD V VK+   
Sbjct: 192 NAGDVIEGKVARLTNFGAFVDI-GGVDGLVHVSELSHQHVQSPEEVVFVGDKVNVKVKSV 250

Query: 678 D-DRGKIKLSMKVVDQNT 694
           + D  +I LS+K      
Sbjct: 251 EKDTERISLSIKDTLPTP 268



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N + +G VV++ +FGAFV       GLVHIS++  + +    +V++ G  V VK+L  D+
Sbjct: 279 NDVIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDE 338

Query: 680 RG-KIKLSMKVVDQNT 694
              ++ LS+K    N 
Sbjct: 339 ENERVSLSIKATLPNE 354



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------------VEQTGAKVNIDDDGT 592
           ++ +   +  ++ I   +   +I +       I            +E    K+  D++  
Sbjct: 22  EVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAYVTKIEFDEEND 81

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                 S  ++    +    + +  + N++ + +V +V+  G  V     + G V  S +
Sbjct: 82  SGAYILSKRQL-ETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--GQRGFVPASLI 138

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           ST+ +   SD   EG T+ +K+ + D +  ++ LS K V+Q   +
Sbjct: 139 STDFIEDFSDF--EGQTIKIKVEELDPENNRVILSRKAVEQAENE 181



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  + K ++VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD +   +        +D G   LS + ++
Sbjct: 64  GDEIEAYVTKIEFDEENDSGAYILSKRQLE 93


>gi|138893735|ref|YP_001124188.1| hypothetical protein GTNG_0056 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250777|ref|ZP_03149464.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|134265248|gb|ABO65443.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209727|gb|EDY04499.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 132

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV       GLVHIS+++   V   +D +K GD V+VK+++ 
Sbjct: 4   EVGSKLQGKVTGITKFGAFVELPEGVTGLVHISEVADNYVKDINDHLKVGDMVYVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
              GKI LS++      
Sbjct: 64  GQDGKIGLSIRKAKDTP 80


>gi|85374328|ref|YP_458390.1| 30S ribosomal protein S1 [Erythrobacter litoralis HTCC2594]
 gi|84787411|gb|ABC63593.1| ribosomal protein S1 [Erythrobacter litoralis HTCC2594]
          Length = 568

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I D+ E N++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRAVLEETRAEQRSELINDLAE-NQVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            +S +RV   S+V++ G TV V+++  ++   +I L MK ++ +  
Sbjct: 231 DMSYKRVNHPSEVIEIGQTVTVQIIRINEETQRISLGMKQLESDPW 276



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +VI      T   + I+++           E     +    ++    V     G V  + 
Sbjct: 242 EVIEIGQTVTVQIIRINEETQRISLGMKQLES----DPWDGVSAKYPVGMKLTGTVTNIT 297

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GLVH+S++S  ++      +V     V V +L+ D ++ +I L +K 
Sbjct: 298 EYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEVDSEKRRISLGLKQ 357

Query: 690 VDQNTGKP 697
             +N  + 
Sbjct: 358 AQRNPWEE 365



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 38/254 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S +  +   + +  I          
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIEIGQTVTVQII---------- 255

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRGI 577
           +       I   M ++ S+    +    P    +      I        +  G + +  +
Sbjct: 256 RINEETQRISLGMKQLESDPWDGVSAKYPVGMKLTGTVTNITEYGAFVELEPGIEGLVHV 315

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +               +A R       +   V   
Sbjct: 316 SEMSWTKKNVHPGKIVSTSQEVEVMVLEVDSEKRRISLGLKQAQRNPWEEFAEKHPVGTE 375

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
            +G+V    +FG F+   G  DG+VH+S ++        D +   ++G+ V   +LD D 
Sbjct: 376 VEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWG--ISGEDALALHRKGEQVKAVVLDVDT 433

Query: 679 DRGKIKLSMKVVDQ 692
           D+ +I L MK +++
Sbjct: 434 DKERISLGMKQLEK 447



 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + T      +     V++V D G  V        G +  S L  +R  +  D  + G  V
Sbjct: 455 ADTSSLRKGQTVTVTVLEVRDGGLEVQVGDDGATGFIKRSDLGRDRDEQRPDRFQAGQKV 514

Query: 671 WVKLLDFDDRGKIKLSMKV 689
              +  FD   K   S+K 
Sbjct: 515 DAMITGFDRSKKPNFSIKA 533


>gi|312128208|ref|YP_003993082.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778227|gb|ADQ07713.1| RNA binding S1 domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 120

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 43/76 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  +I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++ 
Sbjct: 4   KRGQILEGIVKGITQFGAFVELPSGKVGLVHISEVADEYVEDIKKYLKENQTVKVKVINV 63

Query: 678 DDRGKIKLSMKVVDQN 693
            + GKI LS+K   + 
Sbjct: 64  KEDGKISLSIKRAKET 79


>gi|195942367|ref|ZP_03087749.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|195942368|ref|ZP_03087750.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|195942738|ref|ZP_03088120.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|195942845|ref|ZP_03088227.1| 30S ribosomal protein S1 [Borrelia burgdorferi 80a]
 gi|312149735|gb|ADQ29806.1| ribosomal protein S1 [Borrelia burgdorferi N40]
          Length = 551

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G
Sbjct: 261 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLG 320

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V VK+L+ D +  KI L +K +++N  +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQINENPWE 350



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437


>gi|216264365|ref|ZP_03436357.1| ribosomal protein S1 [Borrelia burgdorferi 156a]
 gi|224532793|ref|ZP_03673409.1| ribosomal protein S1 [Borrelia burgdorferi WI91-23]
 gi|225549220|ref|ZP_03770193.1| ribosomal protein S1 [Borrelia burgdorferi 94a]
 gi|215980838|gb|EEC21645.1| ribosomal protein S1 [Borrelia burgdorferi 156a]
 gi|224512281|gb|EEF82666.1| ribosomal protein S1 [Borrelia burgdorferi WI91-23]
 gi|225370078|gb|EEG99518.1| ribosomal protein S1 [Borrelia burgdorferi 94a]
          Length = 551

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G
Sbjct: 261 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLG 320

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V VK+L+ D +  KI L +K +++N  +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQINENPWE 350



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437


>gi|33860870|ref|NP_892431.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33633812|emb|CAE18771.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 363

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +    +V+  
Sbjct: 233 RALVEKKMNRLEVGEVVIGSVKGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNV 291

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 292 NDQMKVMIIDLDSERGRISLSTKALEPEPG 321


>gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
 gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
          Length = 351

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 93/265 (35%), Gaps = 19/265 (7%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISA------QVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +  ++    +R DGR    +R I        Q G+     G+  F +G  + ++V  +G 
Sbjct: 89  MNEIVNKHGIRQDGRKLTEIRRIKCIINEGNQRGIE---DGNVYFEQGQNK-LIVSIVGP 144

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
                 ++  +         ++   P ++ +  + G   R  I  G +  R    V+   
Sbjct: 145 VPISGNINYTNNNSGVQINCNFRVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVI-CD 203

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
                 + I   I E DGS   A +  +S+AL  +G+ +   +     GL        +L
Sbjct: 204 QYSKSQIIINIIILEGDGSVRSAAINATSIALAISGISMKDLIVSATCGLYGKQ----VL 259

Query: 477 SDISGDEDHLGHMDFKVAG--TDSGITAMQMDMKIG--GISENIMVMALQQAKRGRLHIL 532
            D++  E         +A   TD+ I     ++  G   IS   + +  +        ++
Sbjct: 260 YDLTQSEMESLKGTLLMAIHSTDNDIDTDTENVGNGNSDISPVTIDLNTKLKPEMIEFLM 319

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMA 557
           NE      +  + + +F        
Sbjct: 320 NETFSACKQFSVIIRDFLKNYTCNK 344



 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDF------FPLTVNYQERTYAVGKIPGGYLRRE 81
           DG V    G+  ++ ++V    +    ++        +  N++   ++         R+ 
Sbjct: 125 DGNVYFEQGQNKLIVSIVGPVPISGNINYTNNNSGVQINCNFRVSPFS-----SQDRRKR 179

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            +     I    +I R+   +    Y    Q+IIN++  + + S    ++ A S AL +S
Sbjct: 180 GKNDRFCIESGLIISRTFSSVICDQYSKS-QIIINIIILEGDGSVRSAAINATSIALAIS 238

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAV 185
           G+  +  +V A       Q + +    E +    +L + +  T + +
Sbjct: 239 GISMKDLIVSATCGLYGKQVLYDLTQSEMESLKGTLLMAIHSTDNDI 285


>gi|319650349|ref|ZP_08004492.1| hypothetical protein HMPREF1013_01097 [Bacillus sp. 2_A_57_CT2]
 gi|317397910|gb|EFV78605.1| hypothetical protein HMPREF1013_01097 [Bacillus sp. 2_A_57_CT2]
          Length = 132

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 6   EVGSVITGKVTGIQPYGAFVALDENTQGLVHISEVTHGFVKDINEHLKVGDEVKVKVLSV 65

Query: 678 DDR-GKIKLSMKVVDQNT 694
           D+  GKI LS++  ++  
Sbjct: 66  DEEAGKIGLSIRATEEAP 83


>gi|94497990|ref|ZP_01304554.1| ribosomal protein S1 [Sphingomonas sp. SKA58]
 gi|94422573|gb|EAT07610.1| ribosomal protein S1 [Sphingomonas sp. SKA58]
          Length = 570

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  +I +G V  + D+GAFV   G  DGL+H++
Sbjct: 172 GNIVVSRRAILEETRAEQRSGLIQTLAEG-QIIEGVVKNITDYGAFVDL-GGIDGLLHVT 229

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            LS +R+   ++++  GDTV V+++  + D  +I L MK ++ +  +
Sbjct: 230 DLSYKRINHPNEMINIGDTVKVQIIRINRDTQRISLGMKQLESDPWE 276



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           +      +NI D   V+I   +           +   +     +    V     G+V  +
Sbjct: 236 INHPNEMINIGDTVKVQIIRINRDTQRISLGMKQLESDPWEGASAKYPVGAKLTGRVTNI 295

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++GAFV      +GLVH+S++S  ++      +V     V V +L+ D ++ +I L +K
Sbjct: 296 TEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVLVLEVDPEKRRISLGLK 355

Query: 689 VVDQNTG 695
               N  
Sbjct: 356 QAQSNPW 362



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A      S  +   V    +G+V    +FG F+   G  DG+VH+S ++        D 
Sbjct: 356 QAQSNPWDSFAERHPVGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWG--ISGEDA 413

Query: 664 V---KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +   ++G+TV   +LD D ++ +I L MK ++
Sbjct: 414 LALHRKGETVQAVVLDIDVEKERISLGMKQLE 445


>gi|260763015|ref|ZP_05875347.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260673436|gb|EEX60257.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 117

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  
Sbjct: 1   MMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVP 60

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L+M+        P
Sbjct: 61  RKRIGLTMRKDGGEAPAP 78


>gi|164687500|ref|ZP_02211528.1| hypothetical protein CLOBAR_01141 [Clostridium bartlettii DSM
           16795]
 gi|164603274|gb|EDQ96739.1| hypothetical protein CLOBAR_01141 [Clostridium bartlettii DSM
           16795]
          Length = 423

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    ++ +   AE    +E  +SI D  E  +   G+V K+M +GAF+      +GL H
Sbjct: 204 DAERARVRAERDAERARIKEARQSIFDSLEEGQKIHGKVTKIMPYGAFIDIGEGLEGLAH 263

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           I+ LS +RV    DVV EG  + V +L+ + +  +I L++K ++ +  K I 
Sbjct: 264 INNLSWKRVESVEDVVAEGQELDVYVLEVNRENNRIALAVKDINNDPWKLIA 315



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 15/156 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT-------VKIASSSLAEIEAAR-- 607
            I P      IG G + +  I   +  +V   +D         V +   +      A   
Sbjct: 244 KIMPYGAFIDIGEGLEGLAHINNLSWKRVESVEDVVAEGQELDVYVLEVNRENNRIALAV 303

Query: 608 -----EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
                +  + I     V  +  G+VV+ ++ GAFV      +  + ISQLS  RV   + 
Sbjct: 304 KDINNDPWKLIAQEVAVGDVITGKVVRTIERGAFVEIKEGVEAYLPISQLSENRVPTVNS 363

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VV  GD +  K+L+F  +  ++ +S+K V+    + 
Sbjct: 364 VVNPGDEIEAKILNFQPEEKRMLISIKEVNAEPEED 399


>gi|75907727|ref|YP_322023.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
 gi|75701452|gb|ABA21128.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
          Length = 343

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 38.0 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDAPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|186682777|ref|YP_001865973.1| 30S ribosomal protein S1 [Nostoc punctiforme PCC 73102]
 gi|186465229|gb|ACC81030.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
          Length = 375

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 39.1 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDSPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|315607913|ref|ZP_07882906.1| YhgF like protein [Prevotella buccae ATCC 33574]
 gi|315250382|gb|EFU30378.1| YhgF like protein [Prevotella buccae ATCC 33574]
          Length = 711

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  + +FGAFV     +DGLVHISQL+   V+  ++VV+    V VK+++ D  
Sbjct: 639 MVLPGIVTNITNFGAFVDIGVHQDGLVHISQLADRYVSDPNEVVQVHCHVRVKVVEVDLR 698

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M+ V+Q
Sbjct: 699 RHRISLTMRGVEQ 711


>gi|254468299|ref|ZP_05081705.1| ribonuclease PH [beta proteobacterium KB13]
 gi|207087109|gb|EDZ64392.1| ribonuclease PH [beta proteobacterium KB13]
          Length = 161

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 16/156 (10%)

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
            G  S R     RL  R++  ++  T     TL++  ++ ++DG +  A++ G++ A+ D
Sbjct: 7   RGKQSGRTQEIQRLIGRSLRAMIDLTKIGENTLQVDCDVLQADGGTRTASITGAACAIED 66

Query: 451 -----------AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
                      +  PI K +A I+ G+V    D  +L D+  DED     D  +  T+  
Sbjct: 67  AVEYMLKAKLISESPIIKKIAAISAGIV----DSKVLVDLDYDEDSNCETDMNIVMTEDK 122

Query: 500 -ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
               +Q   +    S++ +   L  +      I   
Sbjct: 123 QFIEIQGTAEGNPFSQDELNEILTLSSDAIQSIFQI 158



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 62/153 (40%), Gaps = 19/153 (12%)

Query: 81  ESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
             + +     I R+I RS+R +    K  +N  QV  +V+Q D        S+  A+ A+
Sbjct: 7   RGKQSGRTQEIQRLIGRSLRAMIDLTKIGENTLQVDCDVLQADGG--TRTASITGAACAI 64

Query: 139 -----------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDED---QGSLDLFVSGTQDA 184
                      ++S  P    +       ++ + +++   DED   +  +++ ++  +  
Sbjct: 65  EDAVEYMLKAKLISESPIIKKIAAISAGIVDSKVLVDLDYDEDSNCETDMNIVMTEDKQF 124

Query: 185 V-LMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
           + +    E N  S+D + + +    +  + + +
Sbjct: 125 IEIQGTAEGNPFSQDELNEILTLSSDAIQSIFQ 157


>gi|224081357|ref|XP_002189446.1| PREDICTED: putative S1 RNA binding domain protein [Taeniopygia
           guttata]
          Length = 234

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V DFGAF+   G  + GLVH SQLS+  V   ++++  GD VWVKL+     DD+ K+ L
Sbjct: 16  VTDFGAFIRIPGCRKQGLVHRSQLSSCPVDSPAEMLAVGDRVWVKLIGREMKDDKLKLSL 75

Query: 686 SMKVVDQNTGKPI 698
           SMKVV Q TGK +
Sbjct: 76  SMKVVHQGTGKDL 88


>gi|254454768|ref|ZP_05068205.1| ribosomal protein S1 [Octadecabacter antarcticus 238]
 gi|198269174|gb|EDY93444.1| ribosomal protein S1 [Octadecabacter antarcticus 238]
          Length = 555

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQEV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK +  +  
Sbjct: 221 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQDDPW 266



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +++    ++ ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDAVSGKYPLDSVHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D+ + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDEAKRRVSLGLKQTQRNPWE 354



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 24/254 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I  +   +K+  I    +     
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILTIGETIKVQVIK---INKETH 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   + ++    +S         T RV  +      +    G+ G V   + E + 
Sbjct: 253 RISLGMKQLQDDPWDAVSGKYPLDSVHTGRVTNITDYGAFVELEAGVEGLV--HVSEMSW 310

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      +                  R       +        +G+V
Sbjct: 311 TKKNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLKQTQRNPWEVFAETHPEGTEVEGEV 370

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + +FG FV   G  DG+VH+S L+ E R        ++GD V  K+ + D ++ +I L
Sbjct: 371 KNITEFGLFVGLDGDIDGMVHLSDLTWEGRGEDVIGDFRKGDIVNAKVTEVDVEKERISL 430

Query: 686 SMKVVDQNTGKPIV 699
           S+K +D +  +  V
Sbjct: 431 SIKAMDGDPFQDAV 444



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      +   I   +V K+ D G  V + GA+   +  S LS +R  +  +    G
Sbjct: 438 DPFQDAVGGVKRGTIVTVEVTKIEDGGIEVDYEGAK-SFIRRSDLSRDRAEQRPERFGVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V  ++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKVDARVTNIDAKTRRLGLSIKAREIAEEKEAV 529


>gi|221217470|ref|ZP_03588941.1| ribosomal protein S1 [Borrelia burgdorferi 72a]
 gi|225549866|ref|ZP_03770828.1| ribosomal protein S1 [Borrelia burgdorferi 118a]
 gi|221192748|gb|EEE18964.1| ribosomal protein S1 [Borrelia burgdorferi 72a]
 gi|225369557|gb|EEG99008.1| ribosomal protein S1 [Borrelia burgdorferi 118a]
          Length = 551

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G
Sbjct: 261 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLG 320

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V VK+L+ D +  KI L +K +++N  +
Sbjct: 321 QIVEVKILEIDKENQKISLGIKQINENPWE 350



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 156 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437


>gi|282858267|ref|ZP_06267453.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
 gi|282588976|gb|EFB94095.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
          Length = 729

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 14/142 (9%)

Query: 562 QIRNVIGMGGKVI-----RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           ++ ++IG    +      + I  + G     D    +K       +     E       V
Sbjct: 591 KVADLIGNKELLKTIALQQYITSEVGLPTLTD---IIKELEKPGVDPREQLEEFEFDAHV 647

Query: 617 PEVNKIYKGQV-----VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
             ++ +  G         + +FGAFV     +DGL+HISQL+ + V+  + VV     V 
Sbjct: 648 HTIDDLVVGMELPGIVTNITNFGAFVDLGVHQDGLIHISQLADKFVSDPNSVVHLQQHVR 707

Query: 672 VKLLDFDD-RGKIKLSMKVVDQ 692
           VK+++ D  R +I LSMK + Q
Sbjct: 708 VKIIEVDLCRKRIGLSMKHIKQ 729


>gi|219854800|ref|YP_002471922.1| hypothetical protein CKR_1457 [Clostridium kluyveri NBRC 12016]
 gi|219568524|dbj|BAH06508.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 640

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++     V  +  G+VV+  +FGAFV      D LVHISQ+S +R+ K SD ++  
Sbjct: 554 DPWNNVDIKYPVGNVVLGKVVRFANFGAFVELEPGVDALVHISQISHKRIDKPSDALEIE 613

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             +  K+L+ + +  KI LS+K VD+
Sbjct: 614 QEIKAKILEVNKESEKIALSIKEVDE 639



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +  GT  +AS          +      +  E + + +G+V ++ DFGAFV      DGL+
Sbjct: 449 ERKGTRVVASRREILRIEREKREEETWNRLEKDMVVEGEVRRLTDFGAFVDV-QGVDGLL 507

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           H+S+LS  RV K  DV+K GD + V +LD + 
Sbjct: 508 HVSELSWGRVNKPGDVLKIGDKIQVYILDVNR 539



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 67/188 (35%), Gaps = 5/188 (2%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR----NVIG 568
           S         +    ++ ++  +    S +  +L E         I  +       N+I 
Sbjct: 194 SATEFRQKAAECISKKVDMMVVIGGKNSSNTTKLYEICKSNCNNTIHVENSGEIPDNIIK 253

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
                  G+         I  +  +K++     E+      +        + +  KG V+
Sbjct: 254 TNKIKTIGVTAGASTPNWIIKEAVLKMSDDKNLELNEQLSYMDKNDTQIILGEKIKGIVI 313

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSM 687
            V    AF++     DG++  S+++ E      +++  GD + VK++   ++ G + LS 
Sbjct: 314 SVNSKEAFLNIGYKSDGVLPKSEITKEEDNNLEELIHIGDELDVKVVRRQNEDGYVVLSK 373

Query: 688 KVVDQNTG 695
             +D+   
Sbjct: 374 LELDRENA 381


>gi|148259766|ref|YP_001233893.1| 30S ribosomal protein S1 [Acidiphilium cryptum JF-5]
 gi|326403266|ref|YP_004283347.1| 30S ribosomal protein S1 [Acidiphilium multivorum AIU301]
 gi|146401447|gb|ABQ29974.1| SSU ribosomal protein S1P [Acidiphilium cryptum JF-5]
 gi|325050127|dbj|BAJ80465.1| 30S ribosomal protein S1 [Acidiphilium multivorum AIU301]
          Length = 575

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 177 GNIVVSRRAVLEETRAEQRSELIQGLKEG-QILDGVVKNITDYGAFVDL-GGVDGLLHVT 234

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++  R+   ++ +  G  V V+++ F+ D  +I L MK ++ +  +
Sbjct: 235 DIAWRRINHPAEALTIGQPVRVQVIRFNPDTQRISLGMKQLETDPWE 281



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI-------YK 624
            +    +      + I     V++   +      +  M +  TD  E   +         
Sbjct: 235 DIAWRRINHPAEALTIGQPVRVQVIRFNPDTQRISLGMKQLETDPWEGVDVKYPPGIKVT 294

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+V  + D+GAFV      +GLVH+S++S  ++ A    +V     V V +LD D  + +
Sbjct: 295 GRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNAHPGKIVATSQEVEVMVLDVDAGKRR 354

Query: 683 IKLSMKVVDQNTGK 696
           I L +K V +N  +
Sbjct: 355 ISLGLKQVQRNPWE 368



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVV 664
            R       D   V  I +G++  + +FG F+      DG+VH+S LS +   +      
Sbjct: 363 QRNPWEQFLDEHPVGSIVEGEIRNITEFGLFIGLAPDIDGMVHMSDLSWDEPGELAMAKF 422

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +G+ V  K+LD D ++ +I L +K ++++  
Sbjct: 423 NKGEMVKAKVLDVDVEKERISLGVKQLEEDPA 454


>gi|312891743|ref|ZP_07751251.1| SSU ribosomal protein S1P [Mucilaginibacter paludis DSM 18603]
 gi|311295774|gb|EFQ72935.1| SSU ribosomal protein S1P [Mucilaginibacter paludis DSM 18603]
          Length = 677

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N +    V      + +    ++    I    E  ++ +G V  + DFG F+ 
Sbjct: 231 EFKVVKINHEFKNVVVSHKVLIEDDLENQKT--EIVAKLEKGQVLEGTVKNITDFGVFID 288

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S  R+    +V+     + V +LDFDD + +I L +K +  +  + 
Sbjct: 289 L-GGVDGLLHITDISWGRIEHPKEVLSLDQKINVVVLDFDDEKKRIALGLKQLTPHPWQS 347

Query: 698 I 698
           +
Sbjct: 348 L 348



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 28/256 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHL----------GHMDFKVAGT-DSGITAMQMDMKIG 510
           I  G VK      ++ DI G E  L             D  V  T +  +  +  + K  
Sbjct: 185 IITGFVKSRTKGGLIVDIMGVEAFLPGSQIDIKPIRDYDVYVGKTMEFKVVKINHEFKNV 244

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
            +S  +++    + ++  +    E  +VL  +   + +F      + I    +  ++ + 
Sbjct: 245 VVSHKVLIEDDLENQKTEIVAKLEKGQVLEGTVKNITDFG-----VFIDLGGVDGLLHIT 299

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIY 623
                G +E     +++D    V +      +   A           +S+ +  +V    
Sbjct: 300 DIS-WGRIEHPKEVLSLDQKINVVVLDFDDEKKRIALGLKQLTPHPWQSLDENIQVGSHV 358

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKL--LDFDDR 680
           KG++V V D+GAF+      +GL+H+S++S  +      + +K GD V  ++  LD DDR
Sbjct: 359 KGKIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRNPQEFLKVGDEVEAQVLTLDRDDR 418

Query: 681 GKIKLSMKVVDQNTGK 696
            K+ L +K +  +  +
Sbjct: 419 -KMSLGIKQLTPDPWQ 433



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  +   +       +   V  + +FG FV      DGL+HIS LS  ++V   ++  K 
Sbjct: 430 DPWQHAAEKYAQGTQHIATVKNMTNFGVFVELEDGIDGLIHISDLSWSKKVNHPNEFTKV 489

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+ + V +L+ D D  K+ L  K +++N  
Sbjct: 490 GEKLDVVVLELDVDNRKLSLGHKQLEENPW 519



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           + DD      + S    +E    M           +I  G VV + +    ++     DG
Sbjct: 71  DADDKKFGNYSDSDREALEK---MYDGTFSSINKGEIISGVVVNINNKDVVLNIGFKSDG 127

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK-VVDQNTGKPI 698
           LV +S+            +K GD V V +    D  G++ LS K    Q + + I
Sbjct: 128 LVSLSEFRDTPD------LKVGDEVDVFVESQEDANGQLVLSRKRAKTQKSWERI 176



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +   +  ++ I++G V+KV D GA V      +G V    +  E        +K  D
Sbjct: 518 PWDTFETIFTIDSIHEGTVLKVTDKGAIVALPYGVEGFVPTKHMVKEDGKS----LKTDD 573

Query: 669 TVWVKLLDFDDRGK 682
           T   K+++F+   K
Sbjct: 574 TGEFKIIEFNKENK 587


>gi|291515307|emb|CBK64517.1| SSU ribosomal protein S1P [Alistipes shahii WAL 8301]
          Length = 611

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V    + +     A++ +  I   
Sbjct: 157 QIDVKPIRDY----DVYVDKTMEFKVVKINQEFRNVVVSHKALIEAELEAQKQV--IMSK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV    ++V     + V +LD
Sbjct: 211 LEKGQILEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVNHPEEIVALDQKINVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
           FD+ + +I L +K +  +  + +
Sbjct: 270 FDEAKKRIALGLKQLTPHPWEAL 292



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVYVDKTMEFKVVKINQEFRNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  ++L  +   +  +      + +    +  +I +    
Sbjct: 192 HKALIEAELEAQKQVIMSKLEKGQILEGTVKNITSY-----GVFVDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I     A+   A            ++    +V    KG+
Sbjct: 247 -WGRVNHPEEIVALDQKINVVILDFDEAKKRIALGLKQLTPHPWEALDQTLKVGDKVKGR 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLTPDPWENI 379



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V      +V    +FG FV      DGL+HIS LS  ++V    +    
Sbjct: 374 DPWENIEVKYPVGTKTTAKVRNFTNFGVFVEIEEGIDGLIHISDLSWTKKVKHPGEFTSV 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 434 GADIEVVVLEIDKENRRLSLGHKQLEENPW 463



 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +  + +     A I  A +   S  +   V ++ +G V  V      V+     +G++ +
Sbjct: 19  ENDLGVYDQDKARITEAYDKTLSNVN---VGEVVEGTVTGVNKREVIVNVGYKSEGIIPV 75

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQ 692
           S+            +K GD + V +    D  G++ LS K   Q
Sbjct: 76  SEFRY----NPD--LKVGDKIEVYVESAEDKNGQLALSHKKARQ 113



 Score = 41.4 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +   V+ I++G + ++ D GA V      +G     QL  E         K GD
Sbjct: 462 PWNEFENQYSVDSIHEGTITEMTDKGAVVALGENIEGFCPARQLVKEDGTTP----KTGD 517

Query: 669 TVWVKLLDFDD-RGKIKLS 686
            +  K+L+F     +I LS
Sbjct: 518 KLNFKILEFSKATKRITLS 536


>gi|288554672|ref|YP_003426607.1| hypothetical protein BpOF4_08285 [Bacillus pseudofirmus OF4]
 gi|288545832|gb|ADC49715.1| hypothetical protein BpOF4_08285 [Bacillus pseudofirmus OF4]
          Length = 159

 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G   GLVHIS+++   V   ++ +K G+ V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINEFLKVGEEVTVKVVNV 63

Query: 678 DDRGKIKLS-MKVVDQNTG 695
           +  GKI LS  K  D+  G
Sbjct: 64  EKDGKIGLSIRKAKDRPEG 82


>gi|205372247|ref|ZP_03225061.1| hypothetical protein Bcoam_01870 [Bacillus coahuilensis m4-4]
 gi|205375697|ref|ZP_03228484.1| hypothetical protein Bcoam_22430 [Bacillus coahuilensis m4-4]
          Length = 141

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +  +FGAFV     + GLVHIS+++   V   +D +K GD V VK+L+ +  GKI LS++
Sbjct: 4   RYTNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVTVKVLNVESDGKIGLSIR 63

Query: 689 VVDQNTGKP 697
                  +P
Sbjct: 64  KAVDKPERP 72


>gi|119492683|ref|ZP_01623862.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
 gi|119453021|gb|EAW34192.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
          Length = 414

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D DRG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDADRGRISLSTKQLEPEPG 272


>gi|254432396|ref|ZP_05046099.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
 gi|197626849|gb|EDY39408.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
          Length = 351

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 224 RALVERKMNRLEVGEVVLGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHTVLNV 282

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 283 NDQMKVMIIDLDAERGRISLSTKALEPEPG 312


>gi|169825693|ref|YP_001695851.1| hypothetical protein Bsph_0083 [Lysinibacillus sphaericus C3-41]
 gi|168990181|gb|ACA37721.1| Hypothetical yabR protein [Lysinibacillus sphaericus C3-41]
          Length = 145

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  +  FGAFV     + GLVHIS+++   V   ++ +K GD V VK+++ 
Sbjct: 4   EVGSKVQGKVTGITTFGAFVELPDGKTGLVHISEVADNYVKDINEHLKVGDEVEVKVMNV 63

Query: 678 DDRGKIKLSMK 688
           +  GKI LS++
Sbjct: 64  EADGKIGLSIR 74


>gi|226320681|ref|ZP_03796239.1| ribosomal protein S1 [Borrelia burgdorferi 29805]
 gi|226233897|gb|EEH32620.1| ribosomal protein S1 [Borrelia burgdorferi 29805]
          Length = 540

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              S+    +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G
Sbjct: 250 PWDSVDVKYKIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLG 309

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
             V VK+L+ D    KI L +K +++N  +
Sbjct: 310 QIVEVKILEIDKENQKISLGIKQINENPWE 339



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA V       G++H 
Sbjct: 145 DGLRLILDRRTLEKERDLAKRIELVSSYNEEDVVDGVVERITEYGAIVKIKNFVTGILHK 204

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 205 RNIAFNQVENVEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 254



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + ++ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 337 PWERLTEKYPIGRVVQGVVTNITKTGAFVNIEEGVDAYVSKFDISWLEEIDPEEYFKIGD 396

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 397 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 426


>gi|332685801|ref|YP_004455575.1| RNA binding protein, contains ribosomal protein S1 domain
           [Melissococcus plutonius ATCC 35311]
 gi|332369810|dbj|BAK20766.1| RNA binding protein, contains ribosomal protein S1 domain
           [Melissococcus plutonius ATCC 35311]
          Length = 155

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 42/76 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+     G+V  + +FGAF+     + GLVHIS++S   V    DV+  GD V VK+   
Sbjct: 4   EIGAKLSGKVSGITNFGAFIDLGDGKTGLVHISEISNGFVKDIHDVLTVGDKVTVKVTAV 63

Query: 678 DDRGKIKLSMKVVDQN 693
            + GKI LS++   +N
Sbjct: 64  GNDGKIGLSIQKAQEN 79


>gi|291166598|gb|EFE28644.1| general stress protein 13 [Filifactor alocis ATCC 35896]
          Length = 139

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G++ ++  FGAFV       GLVHISQ+S   V   ++V+  GD V VK+L  ++ G
Sbjct: 10  IVEGKISQIKPFGAFVQLDATTRGLVHISQVSHNFVKDINEVISVGDEVKVKILSIEEDG 69

Query: 682 -KIKLSMKV 689
            KI LS+K 
Sbjct: 70  KKISLSIKQ 78


>gi|254559495|ref|YP_003066590.1| transcriptional accessory protein [Methylobacterium extorquens DM4]
 gi|254266773|emb|CAX22572.1| transcriptional accessory protein [Methylobacterium extorquens DM4]
          Length = 771

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAFV     +DGLVHIS ++ +R+A  S+VVK GD V V +L  
Sbjct: 649 KPGMQLEGVVTNVAAFGAFVDIGVHQDGLVHISAMARKRIASPSEVVKTGDVVRVLVLSV 708

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSM+
Sbjct: 709 DVPRKRIALSMR 720


>gi|193213834|ref|YP_001995033.1| 30S ribosomal protein S1 [Chloroherpeton thalassium ATCC 35110]
 gi|193087311|gb|ACF12586.1| ribosomal protein S1 [Chloroherpeton thalassium ATCC 35110]
          Length = 616

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 11/186 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  +L++       I+  +   ++ S   +  F P  +I   P      ++G     
Sbjct: 123 WEKIYDSLEKGTIISGKIIARVKGGMTVSLSGVEAFLPGSQIDVKPVRDFDALVGQT--- 179

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
               ++    K+N      V      L E   AR   + +    +V  + +G V  + DF
Sbjct: 180 ----MDFRVVKINPLTQNIVVSHKVILEEEYEAR--RKEMLANIKVGMVLEGTVKNITDF 233

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G FV   G  DGLVHI+ ++  R++  S+ V   D + V ++ +D D+ ++ L MK +  
Sbjct: 234 GIFVDL-GGLDGLVHITDITWGRISHPSEAVNLDDPIKVVVIGYDADKQRVSLGMKQLTP 292

Query: 693 NTGKPI 698
           +  + I
Sbjct: 293 HPWENI 298



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-------IYKGQV 627
            G +      VN+DD   V +      +   +  M +      E  +          G+V
Sbjct: 253 WGRISHPSEAVNLDDPIKVVVIGYDADKQRVSLGMKQLTPHPWENIEEKYPAGTRVTGKV 312

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +   +  V  G  V   +L+ D +  K+ L
Sbjct: 313 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPNQFVTMGQEVECVILNIDKEHTKLSL 372

Query: 686 SMKVVDQNTG 695
           SMK  +++  
Sbjct: 373 SMKQTEEDPW 382



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     +NID + T    S    E     +    + +   V+  +KG V  + DFG FV
Sbjct: 354 QEVECVILNIDKEHTKLSLSMKQTE----EDPWIVLAEKYPVDSEHKGIVRNITDFGVFV 409

Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
                 DGLVHIS LS  +++   S++VK+   + VK+L FD +  +I L  K ++ +  
Sbjct: 410 ELESGVDGLVHISDLSWTKKIRHPSEIVKKNQELDVKVLKFDVKARRIALGHKQIEPDPW 469

Query: 696 KP 697
             
Sbjct: 470 SD 471



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG++ ++++ G  V      DG V  S L    V   +   K GD + +K+++FD +  +
Sbjct: 483 KGKIAQIIEKGVIVELPSGVDGFVPASHLLQGGVRDINASFKVGDELPLKVIEFDRENKR 542

Query: 683 IKLS 686
           I LS
Sbjct: 543 IILS 546


>gi|153954192|ref|YP_001394957.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium kluyveri DSM 555]
 gi|146347073|gb|EDK33609.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-related protein
           [Clostridium kluyveri DSM 555]
          Length = 637

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++     V  +  G+VV+  +FGAFV      D LVHISQ+S +R+ K SD ++  
Sbjct: 551 DPWNNVDIKYPVGNVVLGKVVRFANFGAFVELEPGVDALVHISQISHKRIDKPSDALEIE 610

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
             +  K+L+ + +  KI LS+K VD+
Sbjct: 611 QEIKAKILEVNKESEKIALSIKEVDE 636



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +  GT  +AS          +      +  E + + +G+V ++ DFGAFV      DGL+
Sbjct: 446 ERKGTRVVASRREILRIEREKREEETWNRLEKDMVVEGEVRRLTDFGAFVDV-QGVDGLL 504

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           H+S+LS  RV K  DV+K GD + V +LD + 
Sbjct: 505 HVSELSWGRVNKPGDVLKIGDKIQVYILDVNR 536



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 67/188 (35%), Gaps = 5/188 (2%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIR----NVIG 568
           S         +    ++ ++  +    S +  +L E         I  +       N+I 
Sbjct: 191 SATEFRQKAAECISKKVDMMVVIGGKNSSNTTKLYEICKSNCNNTIHVENSGEIPDNIIK 250

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
                  G+         I  +  +K++     E+      +        + +  KG V+
Sbjct: 251 TNKIKTIGVTAGASTPNWIIKEAVLKMSDDKNLELNEQLSYMDKNDTQIILGEKIKGIVI 310

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSM 687
            V    AF++     DG++  S+++ E      +++  GD + VK++   ++ G + LS 
Sbjct: 311 SVNSKEAFLNIGYKSDGVLPKSEITKEEDNNLEELIHIGDELDVKVVRRQNEDGYVVLSK 370

Query: 688 KVVDQNTG 695
             +D+   
Sbjct: 371 LELDRENA 378


>gi|228898984|ref|ZP_04063261.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 4222]
 gi|228860658|gb|EEN05041.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus thuringiensis IBL 4222]
          Length = 722

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 135/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L   ++  F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVKQEVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++     +G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETRVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDTRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LSM
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSM 718


>gi|229101051|ref|ZP_04231831.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-28]
 gi|228682371|gb|EEL36468.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-28]
          Length = 722

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G
Sbjct: 653 LEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKG 712

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 713 RVALSM 718


>gi|89100264|ref|ZP_01173130.1| hypothetical protein B14911_24571 [Bacillus sp. NRRL B-14911]
 gi|89085002|gb|EAR64137.1| hypothetical protein B14911_24571 [Bacillus sp. NRRL B-14911]
          Length = 130

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 6   EVGSVLTGKVTGIQPYGAFVALDENTQGLVHISEITHGYVKDVNEHLKVGDEVNVKVLSV 65

Query: 678 DD-RGKIKLSMK 688
           D+  GKI LS++
Sbjct: 66  DEAAGKIGLSIR 77


>gi|87300975|ref|ZP_01083817.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
 gi|87284846|gb|EAQ76798.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
          Length = 361

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 234 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHTVLNV 292

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 293 NDQMKVMIIDLDAERGRISLSTKALEPEPG 322



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   +  G V  +   GA +         + + ++S  RV   SDV++ G+     ++ +
Sbjct: 80  KPGDVVNGTVFAMEPKGAMIDIGAKTAAFMPLQEVSINRVEALSDVLQPGEIREFFIMSE 139

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 140 ENEDGQLSLSIRRIEYQRAWE 160


>gi|326938027|gb|AEA13923.1| transcription accessory protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 72

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G
Sbjct: 3   LEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKG 62

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 63  RVALSM 68


>gi|312134574|ref|YP_004001912.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774625|gb|ADQ04112.1| RNA binding S1 domain protein [Caldicellulosiruptor owensensis OL]
          Length = 120

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 46/83 (55%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + +  +I +G V  ++ FGAFV     + GLVHIS+++ E V      +KE  TV VK+
Sbjct: 1   MLIKRGQILEGIVKDIIQFGAFVELPNGKVGLVHISEVAEEYVEDIKKYLKENQTVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           +D  + GKI LS+K   +   + 
Sbjct: 61  IDVKEDGKISLSIKRAKETMKRE 83


>gi|229074292|ref|ZP_04207336.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-18]
 gi|229094955|ref|ZP_04225957.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-29]
 gi|229113909|ref|ZP_04243341.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-3]
 gi|228669550|gb|EEL24960.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock1-3]
 gi|228688468|gb|EEL42344.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock3-29]
 gi|228708844|gb|EEL60973.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus Rock4-18]
          Length = 722

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G
Sbjct: 653 LEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKG 712

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 713 RVALSM 718


>gi|160936405|ref|ZP_02083774.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440688|gb|EDP18426.1| hypothetical protein CLOBOL_01297 [Clostridium bolteae ATCC
           BAA-613]
          Length = 663

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 112/329 (34%), Gaps = 44/329 (13%)

Query: 382 PCATGEVSRMGAPS-----RREIG--HGRLARRAIHPVLPQTAQFPYTLR----IVSEIT 430
           P +   V  +G  +     R+ I   H R+A ++   +L +  +    +R    +  ++ 
Sbjct: 259 PDSVSSVRSVGITAGASTPRKIIEEVHTRMAEQSFAELLKEEEESTKPIRTGEIVTGQVI 318

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII--LSDISGDEDHLGH 488
           E      + ++                  AG     V   D++      D++        
Sbjct: 319 EVSKDEIILSI------------------AGNKSEGVITRDEYSNDSNVDLTTKVQIGEE 360

Query: 489 MDFKVAGTDSGI--TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
           M+ KV   + G+   ++             +  A +  +     +   +   LS      
Sbjct: 361 MEAKVIKLNDGVGMVSLSYKRMAADRGNKRLEEAFENQEVLTAKVAQVLDGGLSVEVEGA 420

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
             F P      +     +++    G+ I  ++ +   K          I       +   
Sbjct: 421 RVFIPASL---VSDSYEKDLSKYAGQDIDFVITEFNPKR------RRIIGDRKQLLVAQK 471

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +    +      G V  V DFGAF+   GA DGL+HIS++S  RV     V K 
Sbjct: 472 AKLKEELFARIQPGDTVDGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKA 530

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           GD V V + D     KI LS+K  + N  
Sbjct: 531 GDQVRVLIKDI-QGEKIALSLKFPEANPW 558



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQVVK 629
            G VE         D   V I      +I  + +   +   V   +K     +  G+V +
Sbjct: 518 WGRVENPKKVFKAGDQVRVLIKDIQGEKIALSLKFPEANPWVNAADKYAVGNVVYGRVAR 577

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           + DFGAFV      D L+H+SQ+S E V K +DV++ G  +  +++DF++   KI LS+K
Sbjct: 578 MTDFGAFVELEPGVDALLHVSQISREHVEKPADVLRIGQEIEARVVDFNEADHKISLSIK 637

Query: 689 V 689
            
Sbjct: 638 A 638


>gi|23097526|ref|NP_690992.1| hypothetical protein OB0071 [Oceanobacillus iheyensis HTE831]
 gi|22775749|dbj|BAC12027.1| polyribonucleotide nucleotidyltransferase [Oceanobacillus iheyensis
           HTE831]
          Length = 127

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   ++ +  GD V VK+++ 
Sbjct: 4   EVGSKLQGKVTGITNFGAFVELEKGTTGLVHISEVADNYVKDINEHLTVGDEVKVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           +  GKI LS+K      
Sbjct: 64  EKDGKIGLSIKKAKDRP 80


>gi|227538325|ref|ZP_03968374.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33300]
 gi|300774228|ref|ZP_07084095.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241840|gb|EEI91855.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33300]
 gi|300758907|gb|EFK55736.1| 30S ribosomal protein S1 [Sphingobacterium spiritivorum ATCC 33861]
          Length = 644

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N +    V      + +          I    E  ++ +G V  + DFG F+ 
Sbjct: 219 EFKVVKINHEFKNVVVSHKVLIEDDLE--NQKSEIVAKLEKGQVLEGTVKNITDFGVFID 276

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S  R+    +V+    T+ V +LDFDD + +I L +K + ++  + 
Sbjct: 277 L-GGVDGLLHITDISWGRIEHPKEVLALDQTINVVVLDFDDEKKRIALGLKQLSEHPWES 335

Query: 698 I 698
           +
Sbjct: 336 L 336



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 26/258 (10%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHL----------GHMDFKVAGT-DSGITAMQMDMKI 509
            I  G VK      ++ DI G E  L             D  V  T +  +  +  + K 
Sbjct: 172 AIIDGFVKSRTKGGLIVDIKGVEAFLPGSQIDIKPIRDYDIYVGKTMEFKVVKINHEFKN 231

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
             +S  +++    + ++  +    E  +VL  +   + +F      + I    +  ++ +
Sbjct: 232 VVVSHKVLIEDDLENQKSEIVAKLEKGQVLEGTVKNITDF-----GVFIDLGGVDGLLHI 286

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKI 622
                 G +E     + +D    V +      +   A            S+     +   
Sbjct: 287 TDIS-WGRIEHPKEVLALDQTINVVVLDFDDEKKRIALGLKQLSEHPWESLDKDLVIGSK 345

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DR 680
            KG++V V D+GAF+      +GL+H+S++S  +      + +K GD +  ++L  D + 
Sbjct: 346 VKGKIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEILTLDREE 405

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K+ L +K +  +  K I
Sbjct: 406 RKMSLGIKQLTPDPWKNI 423



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  ++IT+   V    +  V  + +FG FV      DGL+HIS LS  +++   ++  K 
Sbjct: 418 DPWKNITERYPVGSQQQAVVKNMTNFGVFVELEEGIDGLIHISDLSWSKKINHPNEFTKV 477

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           G+T+ V +L+ D+  + + L  K +++N  
Sbjct: 478 GETLDVVVLELDEENRKLSLGHKQLEENPW 507


>gi|288927739|ref|ZP_06421586.1| ribosomal protein S1 [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330573|gb|EFC69157.1| ribosomal protein S1 [Prevotella sp. oral taxon 317 str. F0108]
          Length = 591

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + + E   A++  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEEELEAQK--KEIISK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQILEGTVKNITTYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVSLDQKINVVILD 268

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 269 FDDEKRRIALGLKQLTPHPW 288



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 373 DPWETIEVKYPVGSKHTSKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTQV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 433 GAEIEVVVLEIDKENRRLSLGHKQLEENPW 462



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G V      V++D    V I      +   A            ++     V    KG+V
Sbjct: 246 WGRVSDPHEVVSLDQKINVVILDFDDEKRRIALGLKQLTPHPWDALDQSLNVGDHVKGKV 305

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GL+H+S++S  + +    D +  GD V   +L  D D  K+ L
Sbjct: 306 VVIADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDRDERKMSL 365

Query: 686 SMKVVDQNTGKPI 698
            +K +  +  + I
Sbjct: 366 GIKQLKDDPWETI 378



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                  S   +E A +   +       +++  G V+ +      V+     DG++  S+
Sbjct: 20  NGSPVEVSKDALEKAYDETLNKVSE---HQVVDGTVISIDKKEVIVNIGYKSDGVIPASE 76

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
                       +K GDTV V + +  D +G++ LS K
Sbjct: 77  FRY----NPD--LKVGDTVEVYIENQEDKKGQLILSHK 108


>gi|188585248|ref|YP_001916793.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349935|gb|ACB84205.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 727

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV---NKIYKGQVVKVMDFG 634
            E    K  ++D  T           E  +  ++      E      I +G++  V+DFG
Sbjct: 613 QEFDTDKYTLEDILTGLKKPLYDPREEFDKPRLKKDVMKLEDLSEGMILEGEIRNVVDFG 672

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           AFV      DGL+HIS LS + V    ++V  GD V V+++  D DRG+I L
Sbjct: 673 AFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDRGRIGL 724


>gi|126735021|ref|ZP_01750767.1| ribosomal protein S1 [Roseobacter sp. CCS2]
 gi|126715576|gb|EBA12441.1| ribosomal protein S1 [Roseobacter sp. CCS2]
          Length = 553

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQEV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK +  +  
Sbjct: 221 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQDDPW 266



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +  +++G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDAVEAKFSLGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDSAKRRVSLGLKQTQRNPWE 354



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVV 664
            R       +        +G+V  + +FG FV   G  DG+VH+S L+ E R        
Sbjct: 349 QRNPWEVFAEQFPEGTEVEGEVKNITEFGLFVGLEGDIDGMVHLSDLTWEGRGEDVIGDF 408

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           ++GD V  K+ + D ++ +I LS+K +D + 
Sbjct: 409 RKGDVVQAKVAEVDVEKERISLSIKALDGDP 439



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I   +V K+ D G  V + GA+   +  S LS +R  +  +    G
Sbjct: 438 DPFAEAVGGVKRGSIITVEVTKIEDGGIEVDYEGAK-SFIRRSDLSRDRAEQRPERFGVG 496

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V V++ + D + + + LS+K  +    K  V
Sbjct: 497 DKVDVRVTNIDSKTRKLGLSIKAREIAEEKEAV 529


>gi|293977754|ref|YP_003543184.1| 30S ribosomal protein S1 [Candidatus Sulcia muelleri DMIN]
 gi|292667685|gb|ADE35320.1| Ribosomal protein S1 [Candidatus Sulcia muelleri DMIN]
          Length = 656

 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R +    E  ++ +G V  +  +G+F+   G  DGL HI+ +S ER+   S+ ++ G
Sbjct: 213 KKKRKLISKLEKGQVLRGIVKNITHYGSFIDIGGGIDGLCHITDISWERIEHPSEKLEIG 272

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            T+   +L  D  + +++L +K +  N  
Sbjct: 273 QTINFVILSIDKIKNRVQLGLKQLQSNPW 301



 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTS---DVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           D+GAFV      +GLVH+S++S  +  K       VK GD + V +L++D    K+ LS+
Sbjct: 323 DYGAFVEIFPGVEGLVHVSEMSWSKTKKLRSSQSFVKIGDKIKVLILNYDISDQKMSLSL 382

Query: 688 KVVDQNTGKPI 698
           K +  +  + I
Sbjct: 383 KRLTPDPWENI 393


>gi|326336535|ref|ZP_08202705.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691408|gb|EGD33377.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 585

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  R I   
Sbjct: 160 QIDVKPIRDY----DQFVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKREIIGQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  R+   ++V++    + V +LD
Sbjct: 214 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLIHITDLSWSRINHPTEVLELDQKINVVILD 272

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K + ++  + +
Sbjct: 273 FDDNKSRIQLGLKQLQKHPWEAL 295



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVV 664
            +    ++    +V    KG+VV + D+GAFV      +GL+H+S++S    +    D V
Sbjct: 288 QKHPWEALPADLKVGDKVKGKVVVIADYGAFVEVADGVEGLIHVSEMSWSTHLRSAQDFV 347

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             GD V   +L  D D  K+ L +K +  +    I
Sbjct: 348 NIGDEVEAVILTLDRDERKMSLGIKQLTVDPWTDI 382



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGLV+IS LS  +++   S+    
Sbjct: 377 DPWTDITAKYPVGSRHIGTVRNFTNFGVFVELEEGIDGLVYISDLSWTKKIKHPSEFCSV 436

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +L+ D +  K+ L  K ++ N  
Sbjct: 437 GDKMEVVVLELDVNTRKLALGHKQLEPNPW 466


>gi|313682404|ref|YP_004060142.1| tex-like protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155264|gb|ADR33942.1| Tex-like protein [Sulfuricurvum kujiense DSM 16994]
          Length = 706

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 19/160 (11%)

Query: 538 VLSESRLQLGEFTPRVEIMAIPPD---QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK 594
           V  ES     E   R E+ AI  D   +I   +G+G   +  IV +   K   D   T+ 
Sbjct: 557 VHPESYEAANELMKRYELSAITKDQLPKISQELGIGEATLADIVAEL-RKPGFDPRETLP 615

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                             +TD+ E+ +  I  G V  + DFGAFV      DGL+HISQ+
Sbjct: 616 PIMFRSD-----------LTDIKELREGSIVSGVVRNIADFGAFVDIGLKNDGLIHISQM 664

Query: 653 STERVAKTSDVVKEGDTV-WVKLLDFDD-RGKIKLSMKVV 690
           S +R++   +V+     +  +++++ D  +GK+ LS+K +
Sbjct: 665 SDKRISHPLEVLSVNQQLSRIRVIEVDGVKGKVGLSLKDI 704


>gi|169350927|ref|ZP_02867865.1| hypothetical protein CLOSPI_01704 [Clostridium spiroforme DSM 1552]
 gi|169291989|gb|EDS74122.1| hypothetical protein CLOSPI_01704 [Clostridium spiroforme DSM 1552]
          Length = 714

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 19/237 (8%)

Query: 453 VPISKPVAGIAMGLVKDGDDFII-LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
           V + + V+G+   + K+   +       +  E+               I  +++      
Sbjct: 492 VSLLQYVSGLNSAVAKNIIKYRDEHGKFTNREEIKNVNKLGSKTYQQSIGFLRIPGANDP 551

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
                   A+      +   L ++     +   +LG      ++  I  + I   + +  
Sbjct: 552 FD----ATAIHPENYQQAKALLKLINASEK---ELGTKEIASKLTTINKENILEELKIDS 604

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
             +  I+          D       S          +      +  +   + +G V  V+
Sbjct: 605 YTLDDII----------DSFIKPNRSPRDNYATPLLKKDILKIEDLKPGMVLEGTVRNVV 654

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           DFGAF+      DGLVHIS++S ER+    D +  GD V V ++D D ++ ++ LSM
Sbjct: 655 DFGAFIDIGLKNDGLVHISKISHERIKHPLDKLSIGDIVEVYVIDVDVNKHRVGLSM 711


>gi|27468585|ref|NP_765222.1| hypothetical protein SE1667 [Staphylococcus epidermidis ATCC 12228]
 gi|57867586|ref|YP_189241.1| S1 RNA-binding domain-containing protein [Staphylococcus
           epidermidis RP62A]
 gi|282876524|ref|ZP_06285390.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|293366034|ref|ZP_06612722.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316132|gb|AAO05266.1|AE016749_212 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57638244|gb|AAW55032.1| S1 RNA binding domain protein [Staphylococcus epidermidis RP62A]
 gi|281294776|gb|EFA87304.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|291319757|gb|EFE60115.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329734126|gb|EGG70444.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 716

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQ 692
            L+M   ++
Sbjct: 708 SLTMVAPNE 716


>gi|46446608|ref|YP_007973.1| hypothetical protein pc0974 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400249|emb|CAF23698.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 754

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V  FGAF+     +DGL+H+S+LS   V+  +DVVK GD + V++L  D +R 
Sbjct: 650 LEGIVTNVTAFGAFIDIGVHQDGLIHLSELSDHYVSHPNDVVKAGDKLKVEVLTIDVERK 709

Query: 682 KIKLSMKV-VDQNTGKPI 698
           +I L+ +V  +++T +PI
Sbjct: 710 RISLTARVGQNRSTKEPI 727


>gi|315195373|gb|EFU25760.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 391

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+        ++  V ++  ++ + E   +  + +  + 
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEELEP-----ENNRVILSRKAVEQEENDAKKDQLLQSLN 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G+V ++  FGAF+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 193 EG-DVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+      E + I +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFH--ENDDI-EGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|258444809|ref|ZP_05693138.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|282892973|ref|ZP_06301208.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117]
 gi|257850302|gb|EEV74255.1| RNA binding S1 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|282764970|gb|EFC05095.1| 30S ribosomal protein S1 [Staphylococcus aureus A8117]
          Length = 391

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FG F+   G  DGLVH+S+LS E V    +VV  G  V VK+   
Sbjct: 192 NEGDVIHGKVARLTQFGVFIDI-GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D  T +I+ S    +    E I+        N + +G VV++ +FGA
Sbjct: 238 SIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLANFGA 294

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K    N 
Sbjct: 295 FVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|256111184|ref|ZP_05452220.1| transcription accessory protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265992696|ref|ZP_06105253.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
 gi|262763566|gb|EEZ09598.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 3
           str. Ether]
          Length = 713

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      +AE++      R   ++ T    ++ I         +G V  
Sbjct: 546 DPRVFVDERFGLPTVRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTN 605

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++ + D  R +I L+M+
Sbjct: 606 VAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRVTEVDVLRKRIGLTMR 665

Query: 689 VVDQNTGKP 697
                   P
Sbjct: 666 KDGGEAPAP 674


>gi|116333199|ref|YP_794726.1| transcriptional accessory protein [Lactobacillus brevis ATCC 367]
 gi|116098546|gb|ABJ63695.1| Transcriptional accessory protein [Lactobacillus brevis ATCC 367]
          Length = 731

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 4/102 (3%)

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  K        + A   R+ + ++ D+    ++ +G V  V+DFGAFV     +DGLVH
Sbjct: 627 GLSKPGRDLRDSMPAPLLRQDVLTMADLQPGMEL-QGTVRNVVDFGAFVDIGVKQDGLVH 685

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
           ISQL+   V+  S VV  GD V V +L  D+ R +I+L+MK 
Sbjct: 686 ISQLADHYVSDPSTVVTIGDVVTVWVLSVDENRQRIQLTMKQ 727


>gi|282901377|ref|ZP_06309302.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
 gi|281193656|gb|EFA68628.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
          Length = 343

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISQEHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDAPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
          Length = 300

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 88/234 (37%), Gaps = 28/234 (11%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDIS------------------AQVGLLQRTHGSSLF 341
                 ++     R DGR S   R I                    + G++ +  GS+  
Sbjct: 29  KTQFSEIVQPNGTRADGRTSTEHRKICNLSLGPCVFLDLIFNFLVLKTGVVSQAKGSAYI 88

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
               T+ IV V    RE     D    + + +    + F P +  +  R+      E   
Sbjct: 89  ELDQTKVIVSV-FDPREIPNKTDY---SSKGEIYCEFKFAPFSCHKR-RLHQQDAEEQQF 143

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
             + ++A+   + +     + + I + +  +DG++  A +  + +AL  AG+P+   +  
Sbjct: 144 SAIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITS 203

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMD-FKVAGTDSGITAMQMDMKIGGISE 514
           + + +  +     +L D + +E+ L  +  FK    + GI  + +      IS+
Sbjct: 204 VTLAVQGN----HLLVDPTLEEERLCQVPLFKEEENNHGIVVLSVLATHEQISQ 253



 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPG 75
           L L+TG ++ Q+ G+      +T V+ +V   R + +  D+      Y E  +A    P 
Sbjct: 72  LVLKTGVVS-QAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFA----PF 126

Query: 76  GYLRRESRPTE-NEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMV 132
              +R     +  E   S ++ +++       +    +  +   V+ +D  +    ++  
Sbjct: 127 SCHKRRLHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAITAA 186

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               AL  +G+P    +    +       +++P L+E++
Sbjct: 187 G--VALAHAGIPMYDLITSVTLAVQGNHLLVDPTLEEER 223


>gi|260911616|ref|ZP_05918200.1| 30S ribosomal protein S1 [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634264|gb|EEX52370.1| 30S ribosomal protein S1 [Prevotella sp. oral taxon 472 str. F0295]
          Length = 514

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + + E   A++  + I   
Sbjct: 79  QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEEELEAQK--KEIISK 132

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 133 LEKGQILEGTVKNITTYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVSLDQKINVVILD 191

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 192 FDDEKRRIALGLKQLTPHPW 211



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 296 DPWETIEVKYPVGSKHTSKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTQV 355

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 356 GAEIEVVVLEIDKENRRLSLGHKQLEENPW 385



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G V      V++D    V I      +   A            ++     V    KG+V
Sbjct: 169 WGRVSDPHEVVSLDQKINVVILDFDDEKRRIALGLKQLTPHPWDALDQSLNVGDHVKGKV 228

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GL+H+S++S  + +    D +  GD V   +L  D D  K+ L
Sbjct: 229 VVIADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDRDERKMSL 288

Query: 686 SMKVVDQNTGKPI 698
            +K +  +  + I
Sbjct: 289 GIKQLKDDPWETI 301


>gi|254437855|ref|ZP_05051349.1| ribosomal protein S1 [Octadecabacter antarcticus 307]
 gi|198253301|gb|EDY77615.1| ribosomal protein S1 [Octadecabacter antarcticus 307]
          Length = 555

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQEV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+T+ V+++  + +  +I L MK +  +  
Sbjct: 221 DMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQDDPW 266



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDAVAGKYPLESTHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D+ + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDESKRRVSLGLKQTQRNPWE 354



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 24/254 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I  +   +K+  I    +     
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILTIGETIKVQVIK---INKETH 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   + ++    ++         T RV  +      +    G+ G V   + E + 
Sbjct: 253 RISLGMKQLQDDPWDAVAGKYPLESTHTGRVTNITDYGAFVELEAGVEGLV--HVSEMSW 310

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      +                  R       +        +G+V
Sbjct: 311 TKKNVHPGKIVSTSQEVEVMVLEIDESKRRVSLGLKQTQRNPWEVFAETHPEGTEVEGEV 370

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + +FG FV   G  DG+VH+S L+ E R        ++GD V  K+ + D ++ +I L
Sbjct: 371 KNITEFGLFVGLDGDIDGMVHLSDLTWEGRGEDVIGDFRKGDVVNAKVTEVDVEKERISL 430

Query: 686 SMKVVDQNTGKPIV 699
           S+K +D +  +  V
Sbjct: 431 SIKAMDGDPFQDAV 444



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      +   I   +V K+ D G  V + GA+   +  S LS +R  +  +    G
Sbjct: 438 DPFQDAVGGVKRGTIVTVEVTKIEDGGIEVDYEGAK-SFIRRSDLSRDRAEQRPERFGVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V  ++ + D +  ++ LS+K  +    K  V
Sbjct: 497 DKVDARVTNIDAKTRRLGLSIKAREIAEEKEAV 529


>gi|322382482|ref|ZP_08056370.1| RNA helicase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153544|gb|EFX45940.1| RNA helicase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 762

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHISQ+S + V    DVV  GD V V +L+ D  +G
Sbjct: 690 LQGTVRNVIDFGAFVDIGIKSDGLVHISQMSDKFVKHPMDVVSVGDNVTVWVLNVDIKKG 749

Query: 682 KIKLSMK 688
           ++ L+MK
Sbjct: 750 RVGLTMK 756


>gi|304383005|ref|ZP_07365484.1| 30S ribosomal protein S1 [Prevotella marshii DSM 16973]
 gi|304335858|gb|EFM02109.1| 30S ribosomal protein S1 [Prevotella marshii DSM 16973]
          Length = 591

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNIVVSHKALIEAEMEAQK--KEIISK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 210 LEKGQILEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVELDQKINVVILD 268

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 269 FDDEKKRIALGLKQLTPHPW 288



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNIVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  ++L  +   +  +      + +    +  +I +    
Sbjct: 191 HKALIEAEMEAQKKEIISKLEKGQILEGTVKNITSYG-----VFVDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 246 -WGRVSDPHEVVELDQKINVVILDFDDEKKRIALGLKQLTPHPWDALDPNLKVGDHIKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    D +  GD V   +L  D +  K+ 
Sbjct: 305 VVVIADYGAFVEVAPGVEGLIHVSEMSWSQHLRSAQDFLHVGDEVETVILTLDREERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 365 LGIKQLKEDPWEAI 378



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     +   +  +V    +FG FV      DGL+HIS LS  ++V   S+    
Sbjct: 373 DPWEAIEVKYPIGSKHVAKVCNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTHV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K ++ N  
Sbjct: 433 GADMEVIVLEIDKENRRLSLGHKQLEDNPW 462



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+       + S  E+E + +   +       +++ +G V+ +      V+     DG++
Sbjct: 16  DEFENGSKVNVSKEELEKSYDETLNNVSE---HQVVEGTVISMDKKEVVVNIGYKSDGVI 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+   +        +K GD V V +    D +G++ LS +
Sbjct: 73  PASEFRYDPD------LKVGDKVEVYVESQEDKKGQLILSHR 108


>gi|228473973|ref|ZP_04058714.1| 30S ribosomal protein S1 [Capnocytophaga gingivalis ATCC 33624]
 gi|228274487|gb|EEK13328.1| 30S ribosomal protein S1 [Capnocytophaga gingivalis ATCC 33624]
          Length = 585

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  R I   
Sbjct: 160 QIDVKPIRDY----DQFVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKREIIGQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  R+   ++V++    + V +LD
Sbjct: 214 LEKGQVLEGIVKNITSYGVFVDL-GGVDGLIHITDLSWSRINHPTEVLELDQKINVVILD 272

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K + ++  + +
Sbjct: 273 FDDNKSRIQLGLKQLQKHPWEAL 295



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 98/263 (37%), Gaps = 29/263 (11%)

Query: 460 AGIAMGLVKDG-----DDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGI 512
           A    G + +G         ++ D+ G E  L    +D K            M+ K+  I
Sbjct: 125 AAFESGEIVNGFVKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDQFVNKTMEFKVVKI 184

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           +              +  I  ++ +   E   QL +    +E +          + +GG 
Sbjct: 185 NHE----FKNVVVSHKALIEADIEEQKREIIGQLEK-GQVLEGIVKNITSYGVFVDLGGV 239

Query: 573 V-IRGIVEQTGAKVN-------IDDDGTV-------KIASSSLAEIEAAREMIRSITDVP 617
             +  I + + +++N       +D    V         +   L   +  +    +++D  
Sbjct: 240 DGLIHITDLSWSRINHPTEVLELDQKINVVILDFDDNKSRIQLGLKQLQKHPWEALSDEL 299

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLD 676
           +V    KG+VV + D+GAFV      +GL+H+S++S    +    D V  GD V   +L 
Sbjct: 300 KVGDKVKGKVVVIADYGAFVEVAEGVEGLIHVSEMSWSTHLRSAQDFVNIGDEVEAVILT 359

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
            D D  K+ L +K +  +    I
Sbjct: 360 LDRDERKMSLGIKQLTVDPWTDI 382



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGLV+IS LS  +++   S+    
Sbjct: 377 DPWTDITAKYPVGSRHTGTVRNFTNFGVFVELEEGIDGLVYISDLSWTKKIKHPSEFCAV 436

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +L+ D +  K+ L  K ++ N  
Sbjct: 437 GDKMEVVVLELDVNTRKLALGHKQLEANPW 466


>gi|209523929|ref|ZP_03272481.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
 gi|209495601|gb|EDZ95904.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
          Length = 375

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D DRG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDADRGRISLSTKQLEPEPG 272


>gi|282895318|ref|ZP_06303520.1| RNA binding S1 [Raphidiopsis brookii D9]
 gi|281199624|gb|EFA74484.1| RNA binding S1 [Raphidiopsis brookii D9]
          Length = 343

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISQEHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 38.4 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDAPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|241894819|ref|ZP_04782115.1| S1 domain RNA-binding protein [Weissella paramesenteroides ATCC
           33313]
 gi|241871940|gb|EER75691.1| S1 domain RNA-binding protein [Weissella paramesenteroides ATCC
           33313]
          Length = 727

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+DFGAFV      DGLVHIS+LS + +     +V  GD V V + + 
Sbjct: 653 KVGMQLQGTVRNVVDFGAFVDIGVHEDGLVHISKLSKQHIKNPHAIVAVGDIVTVWVTEI 712

Query: 678 D-DRGKIKLSMKVVD 691
           D  R +I LSM  ++
Sbjct: 713 DKKRQRIGLSMIALN 727


>gi|126740326|ref|ZP_01756014.1| S1 RNA binding domain protein [Roseobacter sp. SK209-2-6]
 gi|126718462|gb|EBA15176.1| S1 RNA binding domain protein [Roseobacter sp. SK209-2-6]
          Length = 785

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK G  V V + + 
Sbjct: 647 KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVTEV 706

Query: 678 D-DRGKIKLSMK 688
           D  R +I L+M+
Sbjct: 707 DVARKRIGLTMR 718


>gi|331086265|ref|ZP_08335345.1| hypothetical protein HMPREF0987_01648 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406031|gb|EGG85554.1| hypothetical protein HMPREF0987_01648 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 717

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVP 617
              ++   +G+G   ++ IV++             K       E+               
Sbjct: 594 NEKKLAEELGIGEITLQDIVKELE-----------KPGRDPREEMPKPILRTDVLEMKDL 642

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLD 676
               + KG V  V+DFG FV     +DGLVHISQ+   + +    + V  GD V VK++ 
Sbjct: 643 TEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKHPLEAVSVGDIVDVKVMS 702

Query: 677 FD-DRGKIKLSMKVV 690
            D  + +I+L+MK +
Sbjct: 703 VDVQKKRIQLTMKGI 717


>gi|224534437|ref|ZP_03675015.1| ribosomal protein S1 [Borrelia spielmanii A14S]
 gi|224514539|gb|EEF84855.1| ribosomal protein S1 [Borrelia spielmanii A14S]
          Length = 551

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 17/141 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE--MIRSITDVP 617
            + I + I +G K+   I+              +   +  +     A +     S+    
Sbjct: 223 VENIEDFIRVGDKLKLKII-------------KINPQTGKMELSLKALKANPWDSVDIKY 269

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLD 676
           +++ I KG+V K++ FGA +       G +HIS  S  R V    +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVAKILPFGAVIELDSELSGFLHISNFSWIRVVKSPQELIKLGQMVEVKILE 329

Query: 677 FDDRG-KIKLSMKVVDQNTGK 696
            D    KI L +K +++N  +
Sbjct: 330 IDKENQKISLGIKQINENPWE 350



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + K+ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGKVIQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDKRKRNVRLGIKQLEESPWED 437



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG   I      E E        +        +  G V ++ ++GA +       G++H 
Sbjct: 156 DGLRLILDRRTLERERDLAKRIELVSSYNQEDVVDGVVDRITEYGAIIKIKNFVTGILHK 215

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             ++  +V    D ++ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 216 RNIAFNQVENIEDFIRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265


>gi|167756510|ref|ZP_02428637.1| hypothetical protein CLORAM_02047 [Clostridium ramosum DSM 1402]
 gi|167702685|gb|EDS17264.1| hypothetical protein CLORAM_02047 [Clostridium ramosum DSM 1402]
          Length = 713

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D       S   A      +      +  +     +G V  V+DFGAFV      DG
Sbjct: 609 DIIDSFIKPNRSPRDAYATPLLKKDILKIEDLKPGMQLEGTVRNVVDFGAFVDIGLKNDG 668

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LVHIS++S ER+    D +  GD V V ++D D ++ ++ LSM
Sbjct: 669 LVHISKISHERIKHPLDKLSIGDIVEVYVIDVDVNKHRVGLSM 711


>gi|312792846|ref|YP_004025769.1| RNA binding S1 domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876112|ref|ZP_07736100.1| RNA binding S1 domain protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797098|gb|EFR13439.1| RNA binding S1 domain protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|312179986|gb|ADQ40156.1| RNA binding S1 domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 120

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  +I +G V  +  FGAFV     + GLVHIS+++ E V      +KE  TV VK+++ 
Sbjct: 4   KRGQILEGIVKGITQFGAFVELPDGKVGLVHISEVAEEYVEDIKKYLKENQTVKVKVINV 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
            + GKI LS+K  ++   + 
Sbjct: 64  KEDGKISLSIKRANETMKRE 83


>gi|206901601|ref|YP_002251093.1| ribosomal protein S1, putative [Dictyoglomus thermophilum H-6-12]
 gi|206740704|gb|ACI19762.1| ribosomal protein S1, putative [Dictyoglomus thermophilum H-6-12]
          Length = 552

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I    ++ +I  G+V  + DFG F+      +GL+    +S ER++  SD+ K GD
Sbjct: 352 PWEVIDQNYKIGEIVSGKVTNITDFGIFIEIKPGLEGLIPRKLISWERISNISDIFKPGD 411

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +  K+++ D +  K+ LS + + ++  + I
Sbjct: 412 FIEAKIIEIDKENKKLTLSRRDLLKDPWEDI 442



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 17/162 (10%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN----IDDDGTVKIAS---------S 598
           R  I+ +  D++   +G+G   I    E +   +       + G +  A          +
Sbjct: 197 RGRIIKVDEDKLTVDLGLGIIGIVEKDEISWFPIKNIRRYYNTGDIVKARVLSLDENSRT 256

Query: 599 SLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +   I+ A+    S+         I K +++K+   G  V       G V +S++S  R 
Sbjct: 257 AQLSIKQAQPNPWSLFKEKYPEGSIIKAEIIKI--SGGIVVKVDNLIGYVPMSEISWGRP 314

Query: 658 AKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
               + +K GD V  K+L  DD   KI LS+K V+ N  + I
Sbjct: 315 QDVKNSLKVGDKVKAKVLSVDDLNQKIFLSIKQVEPNPWEVI 356



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 13/151 (8%)

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
           E +  L    PR  I       I ++   G  +   I+E         D    K+  S  
Sbjct: 381 EIKPGLEGLIPRKLISWERISNISDIFKPGDFIEAKIIEI--------DKENKKLTLSRR 432

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +   ++    I +     +  KG++++ +  G  V      +G +  +Q++ E+  + 
Sbjct: 433 DLL---KDPWEDIDEKYREGQNIKGRIIEKLKDGYIVELEPGIEGFLPYTQINFEKENEI 489

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
               KE + V  K++  + R  +I LS+K +
Sbjct: 490 QG-FKENEEVEAKIVKINPRFRRITLSIKAL 519


>gi|302388702|ref|YP_003824523.1| RNA binding S1 domain protein [Thermosediminibacter oceani DSM
           16646]
 gi|302199330|gb|ADL06900.1| RNA binding S1 domain protein [Thermosediminibacter oceani DSM
           16646]
          Length = 125

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V +I +G+V  +  FGAFV       GLVHIS+++   V    D +   D V VK++ 
Sbjct: 3   VDVGQIVEGKVTGITRFGAFVELPDGATGLVHISEVADGYVKDVRDYLNCNDVVKVKVIA 62

Query: 677 FDDRGKIKLSMKVVDQN 693
             + GKI LS++   +N
Sbjct: 63  ISEDGKISLSIRKTREN 79


>gi|294676675|ref|YP_003577290.1| 30S ribosomal protein S1 [Rhodobacter capsulatus SB 1003]
 gi|294475495|gb|ADE84883.1| 30S ribosomal protein S1 [Rhodobacter capsulatus SB 1003]
          Length = 559

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  +I  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGNLTEG-QIVDGVVKNITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            ++  RV   S+++  G+TV V+++  + D  +I L MK +  +    +
Sbjct: 227 DMAWRRVNHPSEILTIGETVKVQVVKINKDTHRISLGMKQLLNDPWDSV 275



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   S+     +  ++KG+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWDSVETKFALGSVHKGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVDVMVLEIDTAKRRVSLGLKQCLRNPWE 360



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R    +  D   V  + +G+V  + +FG F+      DG+VH+S LS  +R  +     +
Sbjct: 356 RNPWEAFADAHPVGSVIEGEVKNITEFGLFIGLENDIDGMVHLSDLSWDKRGEEAIQEYR 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V   + + D D+ +I LS+K +D +T
Sbjct: 416 KGDVVRAAVTEVDTDKERISLSIKALDADT 445



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   +    V  + D G  V + G +   +  S L+ +R  +  +  + GD V V++++
Sbjct: 453 VKRGSVITVNVTAIEDGGIEVEYNGMK-SFIRRSDLARDRADQRPERFQVGDHVDVRVVN 511

Query: 677 FDDRGK-IKLSMKVVDQNTGKPIV 699
            D + + + +S+K  +    K  V
Sbjct: 512 IDSKTRKLGVSIKAREIAEEKEAV 535


>gi|288924888|ref|ZP_06418824.1| S1 RNA binding domain protein [Prevotella buccae D17]
 gi|288338078|gb|EFC76428.1| S1 RNA binding domain protein [Prevotella buccae D17]
          Length = 720

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  + +FGAFV     +DGLVHISQL+   V+  ++VV+    V VK+++ D  
Sbjct: 648 MVLPGIVTNITNFGAFVDIGVHQDGLVHISQLADRYVSDPNEVVQVHCHVRVKVVEVDLR 707

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M+ V+Q
Sbjct: 708 RHRISLTMRGVEQ 720


>gi|160880581|ref|YP_001559549.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160429247|gb|ABX42810.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 643

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 21/183 (11%)

Query: 527 GRLHILNEMSKVLSESRLQLGE-FTPRVEIMAIPPDQIRNVIGMGGKV-------IRGIV 578
            R  I+ +  ++L   + +L +    ++++  +    ++NV   G  +       +  I 
Sbjct: 447 KRRRIIGDRKQLLVAKKQELSKALFAKIKVGDVVEGTVKNVTDFGAFIDLGGADGLLHIS 506

Query: 579 EQTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSITD-----VPEVNKIYKGQ 626
           E +  ++        + D     I      +I  + +               V  +  G+
Sbjct: 507 EMSWGRIESPKKVFKVGDTVKAFIKDIQGEKIALSLKFPEQNPWANASEKYAVGNVVTGR 566

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKL 685
           V ++ +FGAFV      D L+H+SQ+S E + K +D +K G  V  K++DF +D  KI L
Sbjct: 567 VARMTEFGAFVELEPGVDALLHVSQISKEHIEKPADALKIGQEVTAKVVDFNNDEKKISL 626

Query: 686 SMK 688
           S+K
Sbjct: 627 SIK 629



 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +K   + +AE+   + +  S+  +    ++  G V++V +    ++     DG++  ++ 
Sbjct: 277 IKEVHTRMAEMSFEQLLEESLVTIHNG-EVVDGTVIRVKEDEIVLNIGYKADGILTRNEY 335

Query: 653 STERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           + +       V  EGDT+ VK+L   D  G++ L+ K +    G
Sbjct: 336 TNQPNVDLRTVANEGDTMTVKVLKVNDGEGQVLLTYKRLAAEKG 379


>gi|148555371|ref|YP_001262953.1| 30S ribosomal protein S1 [Sphingomonas wittichii RW1]
 gi|148500561|gb|ABQ68815.1| SSU ribosomal protein S1P [Sphingomonas wittichii RW1]
          Length = 569

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  ++ +G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRAVLEETRAEQRSGLIQSLHEG-QVIEGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            LS +RV   ++++  GD V V+++  + D  +I L MK ++ +  +
Sbjct: 231 DLSYKRVGHPNEMINIGDVVKVQIIRINKDTQRISLGMKQLESDPWE 277



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +          +   + G+V  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 274 DPWEGAAAKYPIGGKFTGRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVST 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D D+ +I L +K    N  +
Sbjct: 334 SQEVEVVILEVDADKRRISLGLKQAITNPWE 364



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
              +  +   V  + +G+V    +FG FV      DG+VH+S ++      +   +  +G
Sbjct: 362 PWEAFAEAHPVGSVVEGEVKNATEFGLFVGLDNDVDGMVHMSDIAWGVTGEEALSLHHKG 421

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           +TV   +LD D ++ +I L +K ++
Sbjct: 422 ETVKAIVLDIDSEKERISLGIKQLE 446


>gi|118588274|ref|ZP_01545683.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
 gi|118438980|gb|EAV45612.1| hypothetical protein SIAM614_23372 [Stappia aggregata IAM 12614]
          Length = 846

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +     +G V  V +FGAFV     +DG
Sbjct: 663 DILSELEKPGRDPRPEFKTATLQDGVEEISDLKPGMKLEGTVTNVTNFGAFVDVGVHQDG 722

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVH+SQL+   V     VVK GD V V +L+ D  R +I ++MK
Sbjct: 723 LVHVSQLADRFVDDPHKVVKAGDIVKVTILEVDVPRKRISMTMK 766


>gi|226355945|ref|YP_002785685.1| ribosomal protein S1-like RNA-binding domain-containing protein
           [Deinococcus deserti VCD115]
 gi|226317935|gb|ACO45931.1| putative Ribosomal protein S1-like RNA-binding domain protein
           [Deinococcus deserti VCD115]
          Length = 126

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 44/65 (67%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G++ +V DFGAF+ F     GLVH+SQ++   V    D V+EGDTV VK+L  D+RG
Sbjct: 9   VAEGRITRVTDFGAFIQFENGETGLVHMSQIAHSFVRNIHDHVREGDTVEVKVLGRDERG 68

Query: 682 KIKLS 686
           ++ LS
Sbjct: 69  RLDLS 73


>gi|119509035|ref|ZP_01628186.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
 gi|119466201|gb|EAW47087.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
          Length = 383

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVDAPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Neosartorya fischeri NRRL 181]
 gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Neosartorya fischeri NRRL 181]
          Length = 269

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 4/160 (2%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E ++   +    
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVH-GPAEGKRGDATGGAA 70

Query: 370 QRNDFMMHY--NFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
                ++    N    A  +  R  G   R+      + R A    L        T+ I 
Sbjct: 71  GSAGAVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  +DGS   A V   +LAL+DAG+P+   ++    G+
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGM 170



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 8/136 (5%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           S G+   + G T ++ +V      K                E    V    G   RR + 
Sbjct: 37  SSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAGAVVEVDVNVAGFAGVDRRRRAG 96

Query: 84  PTEN-EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
            ++     I+ ++  + +          +   + ++V+  D   S    ++ A + AL+ 
Sbjct: 97  GSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVLSADG--SLLAAAVNACTLALVD 154

Query: 141 SGLPFEGPVVGAQVDY 156
           +G+P  G +       
Sbjct: 155 AGIPMPGLLSACTSGM 170


>gi|51598391|ref|YP_072579.1| 30S ribosomal protein S1 [Borrelia garinii PBi]
 gi|51572962|gb|AAU06987.1| ribosomal protein S1 [Borrelia garinii PBi]
          Length = 551

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            + I + + +G K+   I+     K+N+   G ++++  +L           S+    ++
Sbjct: 223 VENIEDFVRVGDKLKLKII-----KINL-QTGKMELSLKALKAN-----PWDSVDIKYKI 271

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD 678
           + I KG+VVK++ FGA +       G +HIS  S  RV     +++K G  V VK+L+ D
Sbjct: 272 DSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQMVEVKILEVD 331

Query: 679 -DRGKIKLSMKVVDQNTGK 696
            +  KI L +K +++N  +
Sbjct: 332 KENQKISLGIKQINENPWE 350



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + DG   I      E E        +        +  G V ++ ++GA V       G++
Sbjct: 154 ESDGLRLILDRRTLERERDLAKRIELVSSYNEEDVVDGVVDRITEYGAIVKIKNFVTGIL 213

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           H   ++  +V    D V+ GD + +K++  +   GK++LS+K +  N    +
Sbjct: 214 HKRNIAFNQVENIEDFVRVGDKLKLKIIKINLQTGKMELSLKALKANPWDSV 265



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + K+ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGKVIQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDRRKRNVRLGIKQLEESPWED 437


>gi|325662483|ref|ZP_08151086.1| hypothetical protein HMPREF0490_01826 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471179|gb|EGC74404.1| hypothetical protein HMPREF0490_01826 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 717

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVP 617
              ++   +G+G   ++ IV++             K       E+               
Sbjct: 594 NEKKLAEELGIGEITLQDIVKELE-----------KPGRDPREEMPKPILRTDVLEMKDL 642

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLD 676
               + KG V  V+DFG FV     +DGLVHISQ+   + +    + V  GD V VK++ 
Sbjct: 643 TEGMVLKGTVRNVIDFGVFVDIGVHQDGLVHISQITDKKFIKHPLEAVSVGDIVDVKVMS 702

Query: 677 FD-DRGKIKLSMKVV 690
            D  + +I+L+MK +
Sbjct: 703 VDVQKKRIQLTMKGI 717


>gi|320451423|ref|YP_004203519.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
 gi|320151592|gb|ADW22970.1| 30S ribosomal protein S1 [Thermus scotoductus SA-01]
          Length = 539

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           +    KV       L   +  +    +   +I N+    G+ I   + +   K      G
Sbjct: 133 VTVKEKVKGGVVADLDGVSAFIPASQLDLKRIPNLDAYVGQQILVKIIEFNRK-----KG 187

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V ++  ++ E E  R    +     +  ++ +G VV V DFGAFV+     DGLVH S+
Sbjct: 188 RVLLSRRAVLEEEQKRAK-EAFFQSLQPGQVVEGTVVDVTDFGAFVNLGP-VDGLVHRSE 245

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           ++  R     +V+ +G  V  +++  D ++ ++ LS+K +  +  
Sbjct: 246 ITWGRFNHPKEVIHKGQKVRAQVVSVDPEKERVNLSIKALIPDPW 290



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ +   V    +G+VV +  FGAFV      +GL+HIS+LS  +R    S+VVKE
Sbjct: 288 DPWTTVAEKYPVGSRVRGKVVGLTQFGAFVEVEPGLEGLIHISELSWTKRPKHPSEVVKE 347

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           GD V   +L  D    ++ L +K    +  +
Sbjct: 348 GDEVEAVVLRLDPAERRLSLGLKQTQPDPWQ 378



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + +T+      + KG++  + DFG FV      +GLVH+S+L   R+   + + K+G
Sbjct: 375 DPWQLLTEKYPPGTVVKGKITGITDFGVFVELEPGMEGLVHVSELDHGRIENPAALFKKG 434

Query: 668 DTVWVKLLDFDD-RGKIKLS 686
           + + V +L+ D    +I LS
Sbjct: 435 EEMEVVVLNIDPVEQRISLS 454



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D +    + S    E     + IR + +  E   +   + VK    G  V       
Sbjct: 96  IKVDPETGQVLLSRKRVEATEHWDRIRELYEKGEPVTVTVKEKVK----GGVVADLDGVS 151

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             +  SQL  +R+      V  G  + VK+++F+  +G++ LS + V +   K
Sbjct: 152 AFIPASQLDLKRIPNLDAYV--GQQILVKIIEFNRKKGRVLLSRRAVLEEEQK 202



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 602 EIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--A 658
            +E A +   +         +I  G+VV V   G  V      +G++  ++L+ + +   
Sbjct: 20  SMEEALQETEARLEKRVRPGQILTGKVVLVGSEGVAVDIGAKTEGIIPFNELTEKSLPEE 79

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +   ++K GD V V+++  D + G++ LS K V+
Sbjct: 80  ELKALLKPGDLVRVQVIKVDPETGQVLLSRKRVE 113


>gi|113478043|ref|YP_724104.1| 30S ribosomal protein S1 [Trichodesmium erythraeum IMS101]
 gi|110169091|gb|ABG53631.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
          Length = 390

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +   S V+K 
Sbjct: 184 RALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI-GGVSGLLHISEISHDHIETPSSVLKV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D DRG+I LS K ++   G
Sbjct: 243 NDELKVMIIDLDADRGRISLSTKQLEPEPG 272



 Score = 38.7 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVENPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|297207865|ref|ZP_06924298.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|296887439|gb|EFH26339.1| 30S ribosomal protein S1 [Staphylococcus aureus subsp. aureus ATCC
           51811]
          Length = 391

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E E        +    
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               +  G+V ++  FGAF+   G  DGLVH+S+LS E V    ++V  G  V VK+   
Sbjct: 192 NEGDVIDGKVARLTQFGAFIDI-GGVDGLVHVSELSHEHVQTPEEIVSIGQDVKVKIKSI 250

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D D  +I LS+K       + I
Sbjct: 251 DRDTERISLSIKDTLPTPFENI 272



 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + I  I +    K+   D  T +I+ S    +    E I+        N + +G VV++ 
Sbjct: 234 EEIVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHE---NDVIEGVVVRLA 290

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           +FGAFV       GLVHIS+++ + +    +V++ G  V VK+L  D+   ++ LS+K  
Sbjct: 291 NFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKAT 350

Query: 691 DQNT 694
             N 
Sbjct: 351 LPNE 354



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVKE
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        ++ G   LS + ++
Sbjct: 64  GDEVEAYVTKVEFDEENETGAYILSRRQLE 93


>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
           3D7]
 gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
           3D7]
          Length = 246

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 19/247 (7%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGL---LQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             + D+  R+DGR ++  R I   +G    L    G S F  G+T+  +   +    + +
Sbjct: 5   QYINDEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTK--LFAYIQGPNEYR 62

Query: 362 YVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPY 421
             D     ++     +    P    E  R  +            R   + ++        
Sbjct: 63  RPD-----EKCLVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNS 117

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
            + I   I E DG    A V    LAL+DAG+ I   ++  ++  +++     I+ D + 
Sbjct: 118 EINIFLYIIERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNN----IIVDGNQ 173

Query: 482 DEDHLGHMDFKVA--GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            E + G  +  +A   + + I  ++ D +   +  +I    L+   +  +H+ N M   +
Sbjct: 174 FEVNSGSPELTLAIDMSSNNIVLLEFDAE---VPIDIFQSMLKTCAQACIHVGNIMKLSI 230

Query: 540 SESRLQL 546
            E+ ++L
Sbjct: 231 KENAIKL 237


>gi|296533547|ref|ZP_06896117.1| 30S ribosomal protein S1 [Roseomonas cervicalis ATCC 49957]
 gi|296266117|gb|EFH12172.1| 30S ribosomal protein S1 [Roseomonas cervicalis ATCC 49957]
          Length = 569

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E   I  G V  + D+GAFV   G  DGL+H++
Sbjct: 172 GNIVVSRRAVLEETRAEQRSELIQGLKEG-MILDGVVKNITDYGAFVDL-GGVDGLLHVT 229

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++  R+   S+ +  G  V V+++ F+ +  +I L MK +  +  +
Sbjct: 230 DIAWRRINHPSEALTIGQQVRVQVIRFNSETQRISLGMKQLMSDPWE 276



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    ++    V   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 273 DPWEGVSIKYPVGAKFSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVAT 332

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +LD D+ + +I L +K    N  +
Sbjct: 333 SQEVDVMILDVDEPKRRISLGLKQAQGNPWE 363



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A         +      + +G++  + +FG FV      DG+VH+S LS E    +   
Sbjct: 356 QAQGNPWELFLEAHGPGSMVEGEIRNITEFGLFVGLAPEIDGMVHMSDLSWEIPGEQAMA 415

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             K+GD V  K+LD D ++ +I L +K +  +    ++
Sbjct: 416 AYKKGDIVKAKVLDVDVEKERISLGIKQLQADPAAEVL 453



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 39/274 (14%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF-----------KVAGTDSG 499
            GV I  PV     G V +  D+    ++    + L H+             K+  T   
Sbjct: 276 EGVSIKYPVGAKFSGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVATSQE 335

Query: 500 ITAMQMDMKIG--GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ-----LGEFTPR 552
           +  M +D+      IS   +  A        L      S V  E R            P 
Sbjct: 336 VDVMILDVDEPKRRISLG-LKQAQGNPWELFLEAHGPGSMVEGEIRNITEFGLFVGLAPE 394

Query: 553 VEIM--------AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
           ++ M         IP +Q       G      IV+     V+++ +  + +    L    
Sbjct: 395 IDGMVHMSDLSWEIPGEQAMAAYKKGD-----IVKAKVLDVDVEKE-RISLGIKQLQADP 448

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AA  + R          +    V KV   G  V       G +  ++L+ +R  +  D  
Sbjct: 449 AAEVLDR-----VRKGDVVTCVVTKVEQNGIEVKVDEVLTGFIRRAELARDRGDQRPDKF 503

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             G+ V  K+   D    ++ L++K  +    + 
Sbjct: 504 AIGEKVDAKVTAVDRAARRLALTIKGKEVEEERE 537


>gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG']
          Length = 591

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F P  +I   P   +  +IG   + I+  + +   K      G + ++   L E   
Sbjct: 151 LKAFLPGSQIDLRPVRDMDRLIG---QTIQVRIIKMNKKR-----GNIIVSRRVLLEEWR 202

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R    ++  + E  +I +G V  + D+GAF+   G  DGL+HI+ +S  RV    + + 
Sbjct: 203 DRRKKVTMDALKEG-EILEGIVKNITDYGAFIDL-GGIDGLLHITDMSWGRVTNPQEFMN 260

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD V V +L  D + G++ L +K +  +  
Sbjct: 261 VGDKVNVVVLKHDKETGRVSLGLKQLTPDPW 291



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWV 672
           T  PE  ++   +VV + D+GAF+      +GL+H++++S    V   S ++  GDT+ V
Sbjct: 296 TRYPEGTRV-NARVVSITDYGAFLEIEPGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEV 354

Query: 673 KLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           ++L  D++ + I L +K +  N    +
Sbjct: 355 QVLKIDEKNRKISLGLKQLGPNPWDDV 381



 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               +     V  +  G++  + DFGAFV      DGL+HIS +S  + V   S+V K+G
Sbjct: 377 PWDDVETKYPVGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKKG 436

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             V V +L  + +R ++ L  K V ++  
Sbjct: 437 QKVEVVVLKIEKERQRLSLGFKQVSEDPW 465



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             G V KVMDFG FV      +GLVH+S++  E   +   V + G ++ V+++  D    
Sbjct: 479 LDGVVTKVMDFGFFVELAEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAER 538

Query: 682 KIKLSMKVVDQNT 694
           KI LSMK V  ++
Sbjct: 539 KIGLSMKAVSADS 551


>gi|154687250|ref|YP_001422411.1| general stress protein 13 [Bacillus amyloliquefaciens FZB42]
 gi|154353101|gb|ABS75180.1| YugI [Bacillus amyloliquefaciens FZB42]
          Length = 130

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MAAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K+L  D ++GKI LS++       +
Sbjct: 61  KVLAVDEEKGKISLSIRATQAAPER 85


>gi|83952621|ref|ZP_00961351.1| 30S ribosomal protein S1 [Roseovarius nubinhibens ISM]
 gi|83835756|gb|EAP75055.1| 30S ribosomal protein S1 [Roseovarius nubinhibens ISM]
          Length = 554

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 221 DMAWRRVNHPSEILAIGETVKVQVIKINKETHRISLGMKQLQDDPW 266



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDLVGAKYPLSSVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDAAKRRVSLGLKQTQRNPWE 354



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I A+   +K+  I    +     
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILAIGETVKVQVIK---INKETH 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   + ++   ++          T RV  +      +   +  G + +  + E + 
Sbjct: 253 RISLGMKQLQDDPWDLVGAKYPLSSVHTGRVTNITDYGAFVE--LEPGVEGLVHVSEMSW 310

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      +                  R       +        +G+V
Sbjct: 311 TKKNVHPGKIVSTSQEVEVMVLEIDAAKRRVSLGLKQTQRNPWEVFAETHPEGTEVEGEV 370

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + +FG FV   G  DG+VH+S LS  ER        ++GD V   + + D ++ +I L
Sbjct: 371 KNITEFGLFVGLDGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVHAVVSEVDVEKERISL 430

Query: 686 SMKVV 690
           S+K V
Sbjct: 431 SIKAV 435



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I   +V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 438 DKFAEAVGGVKRGSIITVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFSVG 496

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           + V V++ + D +  ++ LS+K  +    K  V
Sbjct: 497 NKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAV 529


>gi|318042629|ref|ZP_07974585.1| 30S ribosomal protein S1 [Synechococcus sp. CB0101]
          Length = 355

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 228 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHTVLNV 286

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 287 NDQMKVMIIDLDAERGRISLSTKALEPEPG 316



 Score = 41.4 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   + KG V  +   G+ +         + + ++S  RV   SDV++ G+     +L +
Sbjct: 74  KPGDVVKGTVFAIEPKGSMIDIGAKTAAFMPMQEVSINRVESISDVLEPGEEREFFILSE 133

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 134 ENEDGQLTLSIRRIEYQRAWE 154


>gi|85708921|ref|ZP_01039987.1| 30S ribosomal protein S1 [Erythrobacter sp. NAP1]
 gi|85690455|gb|EAQ30458.1| 30S ribosomal protein S1 [Erythrobacter sp. NAP1]
          Length = 569

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 173 GNIVVSRRAVLEETRAEQRSELIDKLAEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 230

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV   S+V+  GDTV V+++  + +  +I L MK ++ +  
Sbjct: 231 DMSYKRVNHPSEVIAIGDTVTVQIVRINAETQRISLGMKQLESDPW 276



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     VN    GQV  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 274 DPWDGVAAKYPVNMKLTGQVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVST 333

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
              V V +L+ D ++ +I L +K   +N    
Sbjct: 334 SQEVEVMVLEVDSEKRRISLGLKQAQRNPWDE 365



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 38/254 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S + A+           + + + + 
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIAIG----------DTVTVQIV 255

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRGI 577
           +       I   M ++ S+    +    P    +      I        +  G + +  +
Sbjct: 256 RINAETQRISLGMKQLESDPWDGVAAKYPVNMKLTGQVTNITEYGAFVELEPGIEGLVHV 315

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +               +A R       +   V   
Sbjct: 316 SEMSWTKKNVHPGKIVSTSQEVEVMVLEVDSEKRRISLGLKQAQRNPWDEFAEKHPVGAE 375

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
            +G+V    +FG F+   G  DG+VH+S ++        D +   ++G+ V   +LD D 
Sbjct: 376 VEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWG--ISGEDALALHRKGEQVKAVVLDVDV 433

Query: 679 DRGKIKLSMKVVDQ 692
           D+ +I L MK +++
Sbjct: 434 DKERISLGMKQLEK 447



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-AR 643
           +++D D           E  A  E   +        +     V++V D G  V       
Sbjct: 429 LDVDVDKERISLGMKQLEKGAPTEAGAAAAGSLRKGQTVTVTVLEVRDGGLEVQVGDDGA 488

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            G +  S L  +R  +  D  + G  V   +  FD   K   S+K 
Sbjct: 489 TGFIKRSDLGRDRDEQRPDRFQVGSKVDAMVTGFDRSKKPNFSIKA 534


>gi|302871277|ref|YP_003839913.1| RNA binding S1 domain protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574136|gb|ADL41927.1| RNA binding S1 domain protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 120

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + +  +I +G V  +  FGAFV       GLVHIS+++ E V      +KE  TV VK+
Sbjct: 1   MLIKRGQILEGVVKGITQFGAFVELPNGSVGLVHISEVAEEYVEDIKKYLKENQTVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           ++  + GKI LS+K   +   + 
Sbjct: 61  INVKEDGKISLSIKRAKETMKRE 83


>gi|87120344|ref|ZP_01076239.1| hypothetical protein MED121_09133 [Marinomonas sp. MED121]
 gi|86164447|gb|EAQ65717.1| hypothetical protein MED121_09133 [Marinomonas sp. MED121]
          Length = 718

 Score = 83.4 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +  +  +G    +  FG FV     +DGL+HISQL+   V   + +VK G
Sbjct: 635 DQNIEKISDLKEGQTLEGVATNIAAFGVFVDLGVHQDGLIHISQLTNRFVKDPASLVKVG 694

Query: 668 DTVWVKLLDFDDRGKIKLSMKVV 690
           D + V++L+ D++ K ++S+K +
Sbjct: 695 DILTVEVLEVDEKRK-RISLKAI 716


>gi|289550313|ref|YP_003471217.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179845|gb|ADC87090.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus lugdunensis HKU09-01]
          Length = 716

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            +  + +   + +G   +  I+E       +  D+    +  S +  I           D
Sbjct: 590 KLDVNSLSTKLNIGIPTLEDIIESLKAPHRDPRDEFETPLLKSDVLSI----------AD 639

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  GD V V ++
Sbjct: 640 LSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSNKYVKNPMDIVTVGDIVDVWII 698

Query: 676 DFDD-RGKIKLSM 687
           D D+ +GK+ L+M
Sbjct: 699 DIDEQKGKVSLTM 711


>gi|116623389|ref|YP_825545.1| 30S ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226551|gb|ABJ85260.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 571

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 93/245 (37%), Gaps = 36/245 (14%)

Query: 479 ISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMAL---QQAKRGRLHILNE 534
           I       G +  +   + SG +T  + D+    I  +  V         K  RL I + 
Sbjct: 51  IDFGYKSEGIVPIEQFQSPSGEVTVKRGDVVDVMIDRSEQVEGYVLLSHTKAARLRIWDN 110

Query: 535 MSKVLSES-----------------RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
           +    +E                   + +  F P  +    P   +  ++G    V    
Sbjct: 111 LEHAANEQLVLSGRVLGRVKGGLAVDVGIKAFMPGSQADPRPVHNLDALVGQDIPV---- 166

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT--DVPEVNKIYKGQVVKVMDFGA 635
                 K+   +     +  S    IE      +++T   + E   +  G V  + D+GA
Sbjct: 167 ------KIIKLNRRRGNVVVSRKMAIEEEINSRKTVTLDHLFEGAAV-TGTVKNLTDYGA 219

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           F+   G  DGL+H++ +S  R+   S++++ G  + VK+L FD  + ++ L +K ++ + 
Sbjct: 220 FIDL-GGIDGLLHVTDMSYGRITHPSEMLQVGQEITVKVLKFDRTKERVSLGIKQLEPDP 278

Query: 695 GKPIV 699
              ++
Sbjct: 279 WDTVI 283



 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 24/255 (9%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMA 520
               G VK+  D+    D+ G +  L   D             +M      I+  ++   
Sbjct: 205 AAVTGTVKNLTDYGAFIDLGGIDGLLHVTDMSYGRITH---PSEMLQVGQEITVKVLK-- 259

Query: 521 LQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG--MGGKVIRGIV 578
             + K      + ++     ++ ++      RV    +        +    G + +  I 
Sbjct: 260 FDRTKERVSLGIKQLEPDPWDTVIERYPVNGRVIGRVVNVTDYGAFVELEPGVEGLIHIS 319

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIY 623
           E T ++        VK      A +       R               +I     V  + 
Sbjct: 320 EMTWSRRMKHPSKVVKAGDQVEAVVLEVHPKDRRISLGLKQLEPNPWTTIDQRYSVGSVV 379

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G+V  + DFGAF+      DGLVH+S LS  +RV   S+V+K+G  V   +L+ D    
Sbjct: 380 EGRVRNMTDFGAFIEIEEGIDGLVHVSDLSWTKRVKHPSEVLKKGMIVQAVILNIDSSSH 439

Query: 682 KIKLSMKVVDQNTGK 696
           ++ L +K +  +  +
Sbjct: 440 RLSLGIKQLQPDAWE 454



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ +   VN    G+VV V D+GAFV      +GL+HIS+++   R+   S VVK 
Sbjct: 277 DPWDTVIERYPVNGRVIGRVVNVTDYGAFVELEPGVEGLIHISEMTWSRRMKHPSKVVKA 336

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           GD V   +L+   +  +I L +K ++ N    I
Sbjct: 337 GDQVEAVVLEVHPKDRRISLGLKQLEPNPWTTI 369



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL--STERVAKTSDVVK 665
           +   S     +V     G+V ++  FG FV      +GL H S++   + R       V 
Sbjct: 451 DAWESYFQTHQVGDTVHGRVCRIASFGPFVELAEGVEGLCHFSEIPGYSNRRGAEEMPVH 510

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            GD    K++   +   KI LS++ V ++  K
Sbjct: 511 IGDEYDFKIIKMSEAEKKIGLSLRAVTEDEEK 542


>gi|326391105|ref|ZP_08212652.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992890|gb|EGD51335.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 367

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +  A +  +     I+  +   +    L    F P  ++     D++   +G   
Sbjct: 93  LSREKIEKAYKNKEIIEGEIIEVVKGGVIAYSLGAKVFIPASQLELHYVDKLNEYLGKTL 152

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + +R I    G K+       +K+            ++ +++    +   I +G+V  ++
Sbjct: 153 R-LRIIEYIPGKKIVGSQKEVLKL---------EREKVKKALLSNLKEGDIVEGKVKNII 202

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           D GAFV   G  DG + +S++S ER+    +V+  GD V V +L+ D++  KI LS++ V
Sbjct: 203 DKGAFVDIGGF-DGFIPLSEISWERIKNPREVLGIGDKVSVYILNVDEKKEKITLSLRKV 261

Query: 691 DQNTGK 696
             +  +
Sbjct: 262 LPDPWE 267



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +         + KG V  +  FG FV      +GL+H + L       +    K  
Sbjct: 264 DPWENAETKYHEGDVLKGTVTNITPFGVFVQLEPGIEGLIHKNNL-----ENSIKTYKIN 318

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           DT+ V++L+ + +  KI L  K V    G
Sbjct: 319 DTIKVEILNINQQDKKINL--KEVPLEEG 345


>gi|329726096|gb|EGG62568.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU144]
          Length = 716

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQ 692
            L+M   ++
Sbjct: 708 SLTMVDPNE 716


>gi|293571809|ref|ZP_06682825.1| S1 RNA binding domain protein [Enterococcus faecium E980]
 gi|291608063|gb|EFF37369.1| S1 RNA binding domain protein [Enterococcus faecium E980]
          Length = 726

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  ++   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKDILMTVHLSEKELGTEEAVEKLTRLSAEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  K       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 622 GLTKPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 720


>gi|239623627|ref|ZP_04666658.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521658|gb|EEQ61524.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 665

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 106/306 (34%), Gaps = 37/306 (12%)

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLR----IVSEITESDGSSSMATVCGSSLALMDAGV 453
           E  H R+A ++   +L +  +    +R    +  ++ E      + ++            
Sbjct: 287 EEVHTRMAEQSFAELLKEEEESTKPIRTGEIVTGQVIEVSKDEIILSI------------ 334

Query: 454 PISKPVAGIAMGLVKDGDDFII--LSDISGDEDHLGHMDFKVAGTDSGI--TAMQMDMKI 509
                 AG     V   D++      D++        M+ KV   + G+   ++      
Sbjct: 335 ------AGNKSEGVITRDEYSNDSNVDLTTKVQIGEEMEAKVIKLNDGVGMVSLSYKRMA 388

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
                  +  A +  +     +   +   LS        F P      +     +++   
Sbjct: 389 ADRGNKRLEEAFENQEVLTAKVAQVLDGGLSVEVEGARVFIPASL---VSDSYEKDLSKY 445

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            G+ I  ++ +   K          I       +    ++   +    ++    +G V  
Sbjct: 446 AGQDIEFVITEFNPKR------RRIIGDRKQLLVAQKAQLKEELFSRIQIGDAVEGTVKN 499

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           V DFGAF+   GA DGL+HIS++S  RV     V K GD V V + D     KI LS+K 
Sbjct: 500 VTDFGAFIDLGGA-DGLLHISEMSWGRVENPKKVFKAGDQVRVLIKDI-QGEKIALSLKF 557

Query: 690 VDQNTG 695
            + N  
Sbjct: 558 PEANPW 563



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK-----IYKGQVVK 629
            G VE         D   V I      +I  + +   +   V    K     +  G+V +
Sbjct: 523 WGRVENPKKVFKAGDQVRVLIKDIQGEKIALSLKFPEANPWVQAAEKYAVGNVVVGRVAR 582

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           + DFGAFV      D L+H+SQ+S E V K SDV++ G+ +  +++DF++   KI LS+K
Sbjct: 583 MTDFGAFVELEPGVDALLHVSQISREHVEKPSDVLRIGEEIEARVVDFNEADHKISLSIK 642

Query: 689 V 689
            
Sbjct: 643 A 643


>gi|111114950|ref|YP_709568.1| 30S ribosomal protein S1 [Borrelia afzelii PKo]
 gi|216264094|ref|ZP_03436088.1| ribosomal protein S1 [Borrelia afzelii ACA-1]
 gi|110890224|gb|ABH01392.1| ribosomal protein S1 [Borrelia afzelii PKo]
 gi|215980138|gb|EEC20960.1| ribosomal protein S1 [Borrelia afzelii ACA-1]
          Length = 551

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 17/141 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE--MIRSITDVP 617
            + I + I +G K+   I+              +   +  +     A +     S+    
Sbjct: 223 VENIEDFIRVGDKLKLKII-------------KINPQTGKMELSLKALKANPWDSVDVKY 269

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  + V    +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIKVVKSPQELIKLGQMVEVKILE 329

Query: 677 FD-DRGKIKLSMKVVDQNTGK 696
            D +  KI L +K +++N  +
Sbjct: 330 IDKENQKISLGIKQINENPWE 350



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + DG   I      E E        +        +  G V ++ ++GA +       G++
Sbjct: 154 ETDGLRLILDRRTLERERELAKRIELVSSYNEEDVVDGMVDRITEYGAIIKIKNFVTGIL 213

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           H   ++  +V    D ++ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 214 HKRNIAFNQVENIEDFIRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + K+ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGKVIQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDRRKRNVRLGIKQLEESPWED 437


>gi|329735684|gb|EGG71967.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 716

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQ 692
            L+M   ++
Sbjct: 708 SLTMVDPNE 716


>gi|310658769|ref|YP_003936490.1| 30S ribosomal protein s1 [Clostridium sticklandii DSM 519]
 gi|308825547|emb|CBH21585.1| 30S ribosomal protein S1 [Clostridium sticklandii]
          Length = 358

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 16/187 (8%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV--------IRGIV 578
            R +IL +  + L    ++  +     E +          + +GG               
Sbjct: 166 SRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGIFVDIGGFTGLVHISEISWDRS 225

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEA-------AREMIRSITDVPEVNKIYKGQVVKVM 631
           E+   +  I +   V++ S   A           A           +V  I  G+V  + 
Sbjct: 226 EKIKEQYKIGEKINVQVISFDQASERLSLSIKSLASHPWDEFISNNKVGDIVTGEVKNIK 285

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           ++GAF++     DG VHIS LS++ +   ++++K G  V VK++  + +  KI+LS+ + 
Sbjct: 286 EYGAFINLHPTVDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISIEQENKKIELSLILE 345

Query: 691 DQNTGKP 697
           D+   + 
Sbjct: 346 DKEVAEE 352



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID      I S     ++    +   + +  +  ++++G +  + D+G FV   G   
Sbjct: 154 IDIDPKKRRLIFSRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGIFVDIGGFT- 212

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           GLVHIS++S +R  K  +  K G+ + V+++ FD    ++ LS+K +  +     +
Sbjct: 213 GLVHISEISWDRSEKIKEQYKIGEKINVQVISFDQASERLSLSIKSLASHPWDEFI 268



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 620 NKIYKGQVVK----VMDFGAF-VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            ++YKG +VK    +    +F +      DG++   Q+        S+ +K GD + V++
Sbjct: 17  QEVYKGSIVKGRVMIEKDDSFYIDLNYKTDGILPKDQVID------SETIKVGDEIEVQV 70

Query: 675 LDFDDR-GKIKLSMKVVDQ 692
           +  D   G I LS K VD+
Sbjct: 71  VKIDKNTGDILLSKKRVDE 89



 Score = 37.6 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 7/138 (5%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
             I  +   + I    +VI     + G ++ +         ++    +   R     + D
Sbjct: 37  FYIDLNYKTDGILPKDQVIDSETIKVGDEIEV--QVVKIDKNTGDILLSKKRVDEFKVWD 94

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK--EGDTVWVK 673
             +V  + + + V+    G    +  A  G + +S +  + +    DV+K   G T  V+
Sbjct: 95  EVKVGDVLQVKAVEFNAKGLICVYKTALRGFMPLSHIELKFIG--EDVLKSYLGKTFEVE 152

Query: 674 LLDFDDRG-KIKLSMKVV 690
           ++D D +  ++  S K +
Sbjct: 153 IIDIDPKKRRLIFSRKNI 170


>gi|258615293|ref|ZP_05713063.1| S1 RNA-binding domain-containing protein [Enterococcus faecium DO]
          Length = 203

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  E+   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 50  IAKEILTSVQLSEKELGTEEAVEKLTRLSVEKLAESLSVGEETLADILA----------- 98

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  +       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 99  GLTQPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 157

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 158 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 197


>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
          Length = 221

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 6/159 (3%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
             DG  +   R + A+VG++ +  GS+ F  G+T+ +     G     +        +  
Sbjct: 30  SADGAKA-QPRSVFAEVGVVSQAKGSAFFEIGNTKVVAAC-YGPLSTSRRQGF---QETC 84

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                  F P + G   +    +  E    +L   ++ P +  +      +++ + + + 
Sbjct: 85  ILDCDVKFSPFS-GVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQD 143

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           DG++  A +  +S+AL +AG+ +   +A  ++     G 
Sbjct: 144 DGAAFSAVINAASMALANAGIEMFDLLAAASVCFDTSGG 182



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF---FPLTVNYQERTYAV 70
           R +  E G ++ Q+ G+     G T V+A      S    Q F     L  + +   ++ 
Sbjct: 39  RSVFAEVGVVS-QAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILDCDVKFSPFS- 96

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
                G   ++++ T  E  +S++++ S++P    SK  K+  QV   V+Q D  +   V
Sbjct: 97  -----GVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDGAAFSAV 151

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQG 172
             + AAS AL  +G+     +  A V +   G    +P  DE+  
Sbjct: 152 --INAASMALANAGIEMFDLLAAASVCFDTSGGLHPHPTRDEEAA 194


>gi|315660226|ref|ZP_07913081.1| YhgF like protein [Staphylococcus lugdunensis M23590]
 gi|315494653|gb|EFU82993.1| YhgF like protein [Staphylococcus lugdunensis M23590]
          Length = 716

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            +  + +   + +G   +  I+E       +  D+    +  S +  I           D
Sbjct: 590 KLDVNSLSTKLNIGIPTLEDIIESLKAPHRDPRDEFETPLLKSDVLSI----------AD 639

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  GD V V ++
Sbjct: 640 LSKGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSNKYVENPMDIVTVGDIVDVWII 698

Query: 676 DFDD-RGKIKLSM 687
           D D+ +GK+ L+M
Sbjct: 699 DIDEQKGKVSLTM 711


>gi|257884453|ref|ZP_05664106.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257820291|gb|EEV47439.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
          Length = 726

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  ++   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKDILMTVHLSEKELGTEEAVEKLTRLSAEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  K       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 622 GLTKPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 720


>gi|229824935|ref|ZP_04451004.1| hypothetical protein GCWU000182_00284 [Abiotrophia defectiva ATCC
           49176]
 gi|229790938|gb|EEP27052.1| hypothetical protein GCWU000182_00284 [Abiotrophia defectiva ATCC
           49176]
          Length = 305

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 93/257 (36%), Gaps = 26/257 (10%)

Query: 451 AGVPISKPVAGI-----AMGLVKDGDDFIILSDISGDEDHLGHMDFKV----------AG 495
            G  +  PV G+      + L    +  + + ++S D       D  V          A 
Sbjct: 26  EGDLVKGPVIGVGETEVTVDLGSYAEGIVPIDELSNDPKFSIKADIAVGDVVNAMVLSAD 85

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI 555
              G   + +      ++ + +  A +  +   + I   +          +  F P   +
Sbjct: 86  NGYGQVLLSIKRADNILAWDFLADAKESGQVFNVKITEAVKAGAVTYLKGIRAFIPASGL 145

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
                +   + +G    V           + +D+D    + S+     E   +       
Sbjct: 146 ALEYVENTEDFVGKHISV---------RIIEVDEDDKKLVLSAKSVLREEEAKKTEEKMS 196

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
              +  +  G+V ++ ++GAFV       GLVHISQ+S  R+    +VV E D V V + 
Sbjct: 197 KVAIGTVVTGKVERLENYGAFVRLPDGLSGLVHISQMSERRIKHPKEVVSENDEVKVMIT 256

Query: 676 DFDDRGKIKLSM-KVVD 691
           D  D GK+ LSM K V+
Sbjct: 257 DIKD-GKLSLSMTKAVE 272



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             ++   + +           + KG V+ V +    V      +G+V I +LS +     
Sbjct: 8   ESMDDYLDELEQSFKRLREGDLVKGPVIGVGETEVTVDLGSYAEGIVPIDELSNDPKFSI 67

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691
              +  GD V   +L  D+  G++ LS+K  D
Sbjct: 68  KADIAVGDVVNAMVLSADNGYGQVLLSIKRAD 99


>gi|196234543|ref|ZP_03133365.1| RNA binding S1 domain protein [Chthoniobacter flavus Ellin428]
 gi|196221374|gb|EDY15922.1| RNA binding S1 domain protein [Chthoniobacter flavus Ellin428]
          Length = 770

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVHISQ+S E V   +DV+K G  V   +++ D  R +I
Sbjct: 652 GIVTNVTAFGAFVDIGVHQDGLVHISQMSDEFVKNPADVLKVGQRVQATVMEVDMARKRI 711

Query: 684 KLSMKV 689
            LS+K 
Sbjct: 712 ALSLKT 717


>gi|153811995|ref|ZP_01964663.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174]
 gi|149831894|gb|EDM86980.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174]
          Length = 301

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D +    I S+       A E  ++     E+  + +G V  +  +GAFV+      
Sbjct: 161 LDVDKESKKLILSAKEILRAKAEEERKNKVSNLEIGLVTEGTVESLQPYGAFVNLGNGLS 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GLVHISQ+  +R+ K S+V+  GDTV VK+    D GK+ LS+K       K I
Sbjct: 221 GLVHISQICEKRIKKPSEVLAVGDTVKVKVTAIKD-GKLSLSIKEATDMMAKEI 273



 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++   + +       E   I  G V+ V +    +      +G++     S E   
Sbjct: 1   MAESMKDYEKELEESMKTIEEGDILTGTVISVDEKEVILDLKYYAEGVIPAENYSREPGF 60

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              D V EGD V   ++  DD +G I LS 
Sbjct: 61  SLKDEVHEGDEVSATVVRKDDGQGNILLSR 90



 Score = 39.1 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           IP +      G   K      ++  A V   DDG   I  S +  ++        + ++ 
Sbjct: 49  IPAENYSREPGFSLKDEVHEGDEVSATVVRKDDGQGNILLSRVEAVD--VLAWDKLKELK 106

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  ++    V  + + G   +  G R G +  S+L+   V  T + + +   + V++LD 
Sbjct: 107 ESGEVLDVVVKGITNAGVIAYVEGVR-GFIPASKLALNYVEDTEEYLNK--PIQVQVLDV 163

Query: 678 D-DRGKIKLSMKVV 690
           D +  K+ LS K +
Sbjct: 164 DKESKKLILSAKEI 177


>gi|294012140|ref|YP_003545600.1| ribosomal protein S1 [Sphingobium japonicum UT26S]
 gi|292675470|dbj|BAI96988.1| ribosomal protein S1 [Sphingobium japonicum UT26S]
          Length = 570

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  +I +G V  + D+GAFV   G  DGL+H++
Sbjct: 172 GNIVVSRRAILEETRAEQRSGLIQTLAEG-QIIEGVVKNITDYGAFVDL-GGIDGLLHVT 229

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            LS +R+   ++++  GDTV V+++  + D  +I L MK ++ +  +
Sbjct: 230 DLSYKRINHPNEMINIGDTVRVQIIRINRDTQRISLGMKQLESDPWE 276



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           +      +NI D   V+I   +           +   +     +    V     G+V  +
Sbjct: 236 INHPNEMINIGDTVRVQIIRINRDTQRISLGMKQLESDPWEGASAKYPVGAKLSGRVTNI 295

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++GAFV      +GLVH+S++S  ++      +V     V V +L+ D ++ +I L +K
Sbjct: 296 TEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVIVLEVDPEKRRISLGLK 355

Query: 689 VVDQNTG 695
               N  
Sbjct: 356 QAQNNPW 362



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A      S  +   +    +G+V    +FG F+   G  DG+VH+S ++        D 
Sbjct: 356 QAQNNPWDSFAERHPIGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWG--ISGEDA 413

Query: 664 V---KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +   ++G+TV   +LD D ++ +I L MK ++
Sbjct: 414 LALHRKGETVQAVVLDIDVEKERISLGMKQLE 445



 Score = 38.4 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 585 VNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-GA 642
           ++ID +   + +    L     A     +       N+     V++V D G  V      
Sbjct: 428 LDIDVEKERISLGMKQLERGGPAAGGTTAAAAGLNKNQTVTVTVLEVRDGGLEVQAGEDG 487

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
             G +  S L  +R  +  +  + G      +  FD   K   S+K + 
Sbjct: 488 ATGFIKRSDLGRDRDEQRPERFQIGQKFDAMVTGFDRAKKPTFSVKALQ 536


>gi|255654959|ref|ZP_05400368.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-23m63]
 gi|296449706|ref|ZP_06891476.1| possible ribosomal protein S1 [Clostridium difficile NAP08]
 gi|296877977|ref|ZP_06901996.1| possible ribosomal protein S1 [Clostridium difficile NAP07]
 gi|296261430|gb|EFH08255.1| possible ribosomal protein S1 [Clostridium difficile NAP08]
 gi|296431045|gb|EFH16873.1| possible ribosomal protein S1 [Clostridium difficile NAP07]
          Length = 424

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-REMIRSITDVPEVNKIYKGQVVKVMD 632
           I    E+  A++  + +           E +A  +     + +  EV +   G+V K+M 
Sbjct: 187 INKEREERRAQIKAEKEAERARIKQEREEEKARVKAAKEELFNSLEVGQKRDGKVTKIMP 246

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV   G  +GL HI+ L+  RV    DVV EG  V V +LD + +  KI L++K ++
Sbjct: 247 YGAFVDI-GGIEGLAHINNLAWTRVESVEDVVSEGQEVEVYVLDVNKETKKIALALKDIN 305

Query: 692 QNTG 695
            +  
Sbjct: 306 NDPW 309



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I    +++ +   +V+++++ GAFV      D  + IS+LS  RVAK ++VV  G
Sbjct: 307 DPWDLIAKEVQIDDVVNAKVLRIIEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIG 366

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           D V VK+LDF  +  ++ +S+K   +   + I
Sbjct: 367 DEVKVKILDFKPKTKRMLVSIKEATREPEEDI 398



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++   +    +    +V ++  G++  V +    +      DG++ IS+L+ E+     D
Sbjct: 10  MQELLDQQEQVFSKVKVGELTTGKITAVRNDEVQLGLDYGFDGIIPISELNIEKNQYIED 69

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           +   GD +   +     + G I LS   +D+
Sbjct: 70  IYHIGDEITAVITKVSQKDGTITLSKLQLDK 100


>gi|21227909|ref|NP_633831.1| translation initiation factor IF-2 subunit alpha [Methanosarcina
           mazei Go1]
 gi|20906328|gb|AAM31503.1| protein translation initiation factor 2 subunit alpha
           [Methanosarcina mazei Go1]
          Length = 271

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV +     V  V DFGA+V     G R+G +HIS++    V    D V+EG  +  K+
Sbjct: 10  PEVGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVREGQKIVCKV 69

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           L+ D  RG I LS+K V+++  +
Sbjct: 70  LNVDPSRGHIDLSLKDVNEHQRR 92


>gi|319399555|gb|EFV87810.1| S1 RNA binding domain protein [Staphylococcus epidermidis FRI909]
          Length = 716

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQ 692
            L+M   ++
Sbjct: 708 SLTMVDPNE 716


>gi|242241476|ref|ZP_04795921.1| S1 domain RNA-binding protein [Staphylococcus epidermidis W23144]
 gi|242235019|gb|EES37330.1| S1 domain RNA-binding protein [Staphylococcus epidermidis W23144]
          Length = 716

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKV 707

Query: 684 KLSMKVVDQ 692
            L+M   ++
Sbjct: 708 SLTMVDPNE 716


>gi|170758634|ref|YP_001787128.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405623|gb|ACA54034.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
           protein S1 homolog [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 638

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 23/188 (12%)

Query: 528 RLHILNEMSKVLSESRLQ-LGEFTPRVEIMAIPPDQIRNVIGMGGKV------------- 573
           R  I+     +L   R + + E    +E   +   +++     G  +             
Sbjct: 450 RTKIVGSRRNILKTIRNEHIEETWNSLEKDTVVEGEVKRFTDFGAFIEINGVDGLLHVSE 509

Query: 574 -IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKG 625
              G VE+    + I D   V I        + A        +  +S+     +  I  G
Sbjct: 510 ISWGRVEKPEDALKIGDKIKVYILDIDKENKKLALSIKKLIEDPWKSVEIKYPIGNIVLG 569

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
           +VV+  +FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I 
Sbjct: 570 KVVRFANFGAFIELEPGVDGLVHISKISNKRINKPEEELTLGKEVKAKILEVNSVEKRIA 629

Query: 685 LSMKVVDQ 692
           LS+K V++
Sbjct: 630 LSIKDVEE 637



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       S            +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAINKMNNND-------SIIEVSKNEMLNYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++    +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLNYKSEGIIPKEEVTLNEESILKESFKVGDEIEAKIVRIKN 362

Query: 679 DRGKIKLSMKVV 690
           + G + LS+K +
Sbjct: 363 EDGYVVLSLKEL 374


>gi|168056001|ref|XP_001780011.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668616|gb|EDQ55220.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 298

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFC-----GARDGLVHISQLSTERVAKTSDVVK 665
                + E   +Y G+V  V DFGAFV         +  GLVHIS+LS + V    D+++
Sbjct: 98  EENLRLVEEGSVYNGKVNSVTDFGAFVDLALPDGTSSVSGLVHISELSWDPVRNPRDLLE 157

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           EG  V VK++  D +R ++ LS+K ++ + 
Sbjct: 158 EGQMVRVKVIQLDKERKRLALSIKQLETDP 187


>gi|314937788|ref|ZP_07845105.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
 gi|314941666|ref|ZP_07848546.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|314950968|ref|ZP_07854035.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|314992970|ref|ZP_07858366.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|314996417|ref|ZP_07861460.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|313589399|gb|EFR68244.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
 gi|313592493|gb|EFR71338.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
 gi|313596823|gb|EFR75668.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
 gi|313599557|gb|EFR78400.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
 gi|313642819|gb|EFS07399.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
          Length = 726

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  E+   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKEILTSVQLSEKELGTEEAVEKLTRLSVEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  +       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 622 GLTQPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 720


>gi|20089531|ref|NP_615606.1| translation initiation factor IF-2 subunit alpha [Methanosarcina
           acetivorans C2A]
 gi|19914443|gb|AAM04086.1| translation initiation factor 2, subunit alpha [Methanosarcina
           acetivorans C2A]
          Length = 271

 Score = 83.0 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE+ +     V  V DFGA+V     G R+G +HIS++    V    D V+EG  +  K+
Sbjct: 10  PEIGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVREGQKIVCKV 69

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           L+ D  RG I LS+K V+++  +
Sbjct: 70  LNVDPSRGHIDLSLKDVNEHQRR 92


>gi|88607931|ref|YP_504887.1| 30S ribosomal protein S1 [Anaplasma phagocytophilum HZ]
 gi|88598994|gb|ABD44464.1| ribosomal protein S1 [Anaplasma phagocytophilum HZ]
          Length = 542

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 106/282 (37%), Gaps = 20/282 (7%)

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE 483
            ++SE+   DG      +   ++   D+G       AG+    V    +F +       E
Sbjct: 23  DVLSELL--DGGPREGEIIEGTVICKDSGYITVD--AGLKSEGVVSLREFELGEGKQDIE 78

Query: 484 D-HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
                 +  +     SG   +  +  +       +  A  +       I   +    +  
Sbjct: 79  VGSKVKLYLEKTEGKSGSVVLSREKAVRDELWQKLEQAAAENLDIEGVIFGSIKCGFTVD 138

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
              +  F P      +   Q++++  + GK  +  + +   K      G V ++  ++ E
Sbjct: 139 VGGVVAFLPASH---VGLRQVKDITPLLGKKQKFRILKMDKK-----QGNVVVSRKAVLE 190

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-----GARDGLVHISQLSTERV 657
              A      ++ + E + I +G+V  +  +G F+        G  DGL+HI+ +S  RV
Sbjct: 191 ESLADAKDSFLSTLEEGS-IVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRV 249

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +  S V   G TV  K++  D +  KI L +K ++++    +
Sbjct: 250 SHPSAVFSCGQTVRAKIIRIDRENRKISLGVKQLEESPWANV 291



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              ++ +   V  I+KG V  + D+G FV      +GL+H+S++S  R     + +   G
Sbjct: 287 PWANVEERYPVGSIHKGTVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQLFMRG 346

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           + + VK+L  D  + ++ LS+K   +N  +
Sbjct: 347 EEIEVKVLSIDATKNRMSLSIKRCKENPWE 376



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-----ARDGLVHISQLSTERVAKTSDV 663
              +  +   V  I   +V  + + G FV           +GL+  ++LS          
Sbjct: 374 PWEAFIEKHPVGSIVNTKVKSIGNLGMFVSLTDDDTNSGIEGLIRSTELSWS--GSPESA 431

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +K    GD +  K+L    +R KI L +K ++ + 
Sbjct: 432 LKRYNIGDCLQAKILMVSANRNKIDLGVKQIEHDP 466


>gi|313673962|ref|YP_004052073.1| tex-like protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940718|gb|ADR19910.1| Tex-like protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 710

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 11/136 (8%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
               I    G+G   +  I+     K ++D   +V             ++ +  I D+ E
Sbjct: 585 NITDISKQFGIGELTLNDIITNL-EKPDLDIRDSVDPVIF--------KKGLLKIEDLKE 635

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I  G+V  ++DFG FV       G +HIS+LS   +   S +++ G+ +  K+   D
Sbjct: 636 G-MIIDGKVTNIVDFGVFVDIGLKESGFIHISELSDRYIKHPSHILEVGNKIKAKIKSID 694

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS K +++N
Sbjct: 695 MERKRISLSKKGINEN 710


>gi|227551626|ref|ZP_03981675.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330]
 gi|257895772|ref|ZP_05675425.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|293377613|ref|ZP_06623802.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1]
 gi|227179189|gb|EEI60161.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330]
 gi|257832337|gb|EEV58758.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|292643613|gb|EFF61734.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1]
          Length = 726

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  ++   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKDILMTVHLSEKELGTEEAVEKLTRLSAEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  K       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 622 GLTKPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 720


>gi|317484723|ref|ZP_07943624.1| tex-like domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924079|gb|EFV45264.1| tex-like domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 712

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S     +      G V  +  FGAFV     +DGLVHISQL+   V   ++VVK    V 
Sbjct: 633 STMQDLKQGMKLPGIVTNITAFGAFVDIGVHQDGLVHISQLANRFVRDPNEVVKVHQEVL 692

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V +LD D  R +I L+M+
Sbjct: 693 VTVLDVDIPRKRISLTMR 710


>gi|218283960|ref|ZP_03489821.1| hypothetical protein EUBIFOR_02417 [Eubacterium biforme DSM 3989]
 gi|218215477|gb|EEC89015.1| hypothetical protein EUBIFOR_02417 [Eubacterium biforme DSM 3989]
          Length = 715

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +N   +G V  V+DFGAFV      DGLVH+S++ST+RV   SDVV  GD V V + + 
Sbjct: 641 HINDKLEGTVRNVVDFGAFVDIGLHEDGLVHVSKMSTKRVKHPSDVVSVGDIVTVWVYNI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K++L+M
Sbjct: 701 DQEKQKVQLTM 711


>gi|182420080|ref|ZP_02951314.1| RNA-binding protein [Clostridium butyricum 5521]
 gi|237669482|ref|ZP_04529462.1| RNA binding S1 domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376117|gb|EDT73704.1| RNA-binding protein [Clostridium butyricum 5521]
 gi|237654926|gb|EEP52486.1| putative RNA-binding protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 134

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V+ + +FGAF+   G + GLVHIS+++   V    + + E D V VK++  DD G
Sbjct: 8   IVEGTVINITNFGAFIEVEG-KTGLVHISEVADSYVKDIREHLNEQDKVKVKVISIDDNG 66

Query: 682 KIKLSMKVVD 691
           KI LS+K  +
Sbjct: 67  KISLSIKQAN 76


>gi|308174830|ref|YP_003921535.1| phosphorylase or nucleotidyl transferase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607694|emb|CBI44065.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus amyloliquefaciens DSM
           7]
 gi|328554785|gb|AEB25277.1| general stress protein 13 [Bacillus amyloliquefaciens TA208]
 gi|328913142|gb|AEB64738.1| putative RNA degradation protein; putative phosphorylase or
           nucleotidyl transferase [Bacillus amyloliquefaciens LL3]
          Length = 130

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    EV  +Y G+V  +  +GAFV       GLVHIS+++   V   ++ +  GD V V
Sbjct: 1   MAAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSIGDEVQV 60

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K+L  D ++GKI LS++       +
Sbjct: 61  KVLAVDEEKGKISLSIRATQAAPER 85


>gi|327276287|ref|XP_003222901.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 2 [Anolis
           carolinensis]
          Length = 262

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 95/264 (35%), Gaps = 32/264 (12%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE---DEQYV 363
           M  ++ + D  D  ++R I  + GLL R  GS+ +++GDT  +  V  G  E    ++  
Sbjct: 1   METEQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGV-YGPSEVKVSKEIY 59

Query: 364 D------------SLSG-----TQRNDFMMHYN-----FLP--CATGEVSRMGAPSRREI 399
           D             L G      +      +YN     F+P      ++ +       E 
Sbjct: 60  DKATLEVMLRPKVGLPGLQPSLPRSAGVSPNYNSDNSIFVPEDLEVLKIKQSSEQGVYER 119

Query: 400 GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPV 459
              ++ ++    V+  T     ++ IV ++    GS   + +  + + LMDAG+P+    
Sbjct: 120 SREQMIKKTCEAVVLGTLHPRSSITIVLQVITDAGSLLASCLNAACMGLMDAGLPMGSLF 179

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
            G+   L  DG +F +      +++    + F +   +  +    M       S   +  
Sbjct: 180 CGVTCALDADG-NFTLDPTAKQEKEAQTVLTFAIDSIEKKVLMSSMKGTC---SVEQLQQ 235

Query: 520 ALQQAKRGRLHILNEMSKVLSESR 543
            +  ++R    I            
Sbjct: 236 CVAASQRAADTIFQFYRDSACRKY 259



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 42/245 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           R +  E G ++R  DG+     G+T VLA V     +   K+  D   L V  + +    
Sbjct: 17  RRIVCEQGLLSR-PDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKVGLP 75

Query: 71  GKIPGGYLRRESR-------------PTENEILISR------MIDRSIRPLFSKCY---- 107
           G  P   L R +              P + E+L  +      + +RS   +  K      
Sbjct: 76  GLQPS--LPRSAGVSPNYNSDNSIFVPEDLEVLKIKQSSEQGVYERSREQMIKKTCEAVV 133

Query: 108 ------KNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQ 160
                 ++   +++ V+  D  S      + AA   LM +GLP      G       +G 
Sbjct: 134 LGTLHPRSSITIVLQVI-TDAGSLL-ASCLNAACMGLMDAGLPMGSLFCGVTCALDADGN 191

Query: 161 YVLNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
           + L+P   ++   Q  L   +   +  VLM  ++    S + +   +         + + 
Sbjct: 192 FTLDPTAKQEKEAQTVLTFAIDSIEKKVLMSSMKGT-CSVEQLQQCVAASQRAADTIFQF 250

Query: 218 ISKLA 222
               A
Sbjct: 251 YRDSA 255


>gi|260681923|ref|YP_003213208.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260685521|ref|YP_003216654.1| putative RNA-binding protein [Clostridium difficile R20291]
 gi|260208086|emb|CBA60328.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260211537|emb|CBE01713.1| putative RNA-binding protein [Clostridium difficile R20291]
          Length = 716

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S +L++    ISK +A   +   ++  DF   + +   +     
Sbjct: 475 VVEDSVNSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQ 534

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       +    K+    I   +  V +++  ++ E
Sbjct: 535 AFTQCAGFMR-ILEGKNPLDNTGVHPE----SYDICKKMIEIIGYSLDDVKNKNIGEIDE 589

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAR 607
               + +      ++   + +G   ++ I+ +      +  ++G   I  + + +IE  +
Sbjct: 590 KIKEIGL-----RELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQ 644

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E               KG +  V+DFGAFV      DGLVH S++S   V     +V  G
Sbjct: 645 E-----------GMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVG 693

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V VK++  D ++ ++ LSMK
Sbjct: 694 DIVDVKVIGIDLNKKRVALSMK 715


>gi|126697717|ref|YP_001086614.1| putative RNA-binding protein [Clostridium difficile 630]
          Length = 716

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S +L++    ISK +A   +   ++  DF   + +   +     
Sbjct: 475 VVEDSVNSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQ 534

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       +    K+    I   +  V +++  ++ E
Sbjct: 535 AFTQCAGFMR-ILEGKNPLDNTGVHPE----SYDICKKMIEIIGYSLDDVKNKNIGEIDE 589

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAR 607
               + +      ++   + +G   ++ I+ +      +  ++G   I  + + +IE  +
Sbjct: 590 KIKEIGL-----RELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQ 644

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E               KG +  V+DFGAFV      DGLVH S++S   V     +V  G
Sbjct: 645 E-----------GMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVG 693

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V VK++  D ++ ++ LSMK
Sbjct: 694 DIVDVKVIGIDLNKKRVALSMK 715


>gi|255531084|ref|YP_003091456.1| RNA binding S1 domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255344068|gb|ACU03394.1| RNA binding S1 domain protein [Pedobacter heparinus DSM 2366]
          Length = 644

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N +    V      + +   ++++   I    E  ++ +G V  + DFG F+ 
Sbjct: 217 EFKVVKINHEFKNVVVSHKILIEDDLESQKV--EIVSKLEKGQVLEGTVKNITDFGVFID 274

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S  R+    +V+   + + V +LDFDD + +I L +K +  +  + 
Sbjct: 275 L-GGVDGLLHITDISWGRIEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWES 333

Query: 698 I 698
           +
Sbjct: 334 L 334



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 92/252 (36%), Gaps = 20/252 (7%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G VK      ++ DI G E  L      +         +   M+   +   I        
Sbjct: 174 GFVKSRTKGGLIVDIMGVEAFLPGSQIDIKPIRDYDVYVGKTMEFKVV--KINHEFKNVV 231

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------KVIRG 576
              ++ I +++     E   +L +    +E            I +GG         +  G
Sbjct: 232 VSHKILIEDDLESQKVEIVSKLEK-GQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWG 290

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQVVK 629
            +E     +++D+   V +      +   A            S+     +    KG++V 
Sbjct: 291 RIEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWESLNADLAIGSKVKGKIVT 350

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V D+GAF+      +GL+H+S++S  +      + +K GD +  ++L  D +  K+ L +
Sbjct: 351 VADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEVLTLDREDRKMSLGI 410

Query: 688 KVVDQNTGKPIV 699
           K + Q+  + + 
Sbjct: 411 KQLTQDPWQNVA 422



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++  +++ +   +   +   V  + +FG FV      DGL+HIS LS  ++V   ++  K
Sbjct: 415 QDPWQNVAERYPIGSKHTAVVKNMTNFGVFVEIEEGIDGLIHISDLSWSKKVNHPNEFTK 474

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GDT+ V +L+ D D  K+ L  K +++N  
Sbjct: 475 VGDTLAVVVLELDVDNRKLSLGHKQLEENPW 505


>gi|169628639|ref|YP_001702288.1| RNA-binding protein [Mycobacterium abscessus ATCC 19977]
 gi|169240606|emb|CAM61634.1| Putative RNA binding protein, contains S1 domain [Mycobacterium
           abscessus]
          Length = 787

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+S +S   V+   +VVK G  V 
Sbjct: 647 EKVSDLKAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGQVVR 706

Query: 672 VKLLDFD-DRGKIKLSMKV-VDQNTGK 696
           VK+ + D  R +I L++++  D   GK
Sbjct: 707 VKVTEVDIPRQRIGLTLRLNDDPQQGK 733


>gi|160945504|ref|ZP_02092730.1| hypothetical protein FAEPRAM212_03033 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443235|gb|EDP20240.1| hypothetical protein FAEPRAM212_03033 [Faecalibacterium prausnitzii
           M21/2]
          Length = 182

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +++G+V  V  FGAFV     R G+VHIS++S E V   + V+ +GD V V++++ 
Sbjct: 4   EVGNVFEGRVTGVKPFGAFVALPEGRVGMVHISEVSNEFVQDINTVLHDGDAVKVQVINI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
              GKI LS+K +     +
Sbjct: 64  APDGKIALSIKRLLPPAPR 82


>gi|294620344|ref|ZP_06699656.1| protein tex [Enterococcus faecium E1679]
 gi|291593415|gb|EFF24977.1| protein tex [Enterococcus faecium E1679]
          Length = 726

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  E+   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKEILTSVQLSEKELGTEEAVEKLTRLSVEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  +       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 622 GLTQPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 720


>gi|198276801|ref|ZP_03209332.1| hypothetical protein BACPLE_03004 [Bacteroides plebeius DSM 17135]
 gi|198270326|gb|EDY94596.1| hypothetical protein BACPLE_03004 [Bacteroides plebeius DSM 17135]
          Length = 712

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                ++      +R++ D+ E  ++  G V  + +FG FV      +GLVH+SQL+   
Sbjct: 617 PRQKIQVFEFDRNVRTLDDLQEGMEL-PGIVTNITNFGCFVDIGIKENGLVHVSQLADRF 675

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           V+  +DVV+    V VK++  D +R +I+L+MK ++
Sbjct: 676 VSNPADVVRIHQHVRVKVMSIDHERKRIQLTMKGLN 711


>gi|194015965|ref|ZP_03054580.1| protein YhgF [Bacillus pumilus ATCC 7061]
 gi|194012320|gb|EDW21887.1| protein YhgF [Bacillus pumilus ATCC 7061]
          Length = 719

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D  T           +   +      +  +     +G V  V+DFGAFV     +DG
Sbjct: 613 DIVDQLTRPERDPRDEVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDG 672

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           LVHIS+LS   V    DVV  GD V V +   D  +G++ LSM
Sbjct: 673 LVHISKLSNRFVKHPLDVVSVGDIVTVWVDSVDQAKGRVALSM 715


>gi|69248547|ref|ZP_00604768.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257878425|ref|ZP_05658078.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257882843|ref|ZP_05662496.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257889376|ref|ZP_05669029.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257894389|ref|ZP_05674042.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260560014|ref|ZP_05832192.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|261207890|ref|ZP_05922575.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289566958|ref|ZP_06447362.1| S1 RNA binding domain-containing protein [Enterococcus faecium
           D344SRF]
 gi|293559960|ref|ZP_06676468.1| protein tex [Enterococcus faecium E1162]
 gi|293569020|ref|ZP_06680333.1| S1 RNA binding domain protein [Enterococcus faecium E1071]
 gi|294623293|ref|ZP_06702158.1| protein tex [Enterococcus faecium U0317]
 gi|314948913|ref|ZP_07852282.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
 gi|68194393|gb|EAN08900.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257812653|gb|EEV41411.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257818501|gb|EEV45829.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257825736|gb|EEV52362.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257830768|gb|EEV57375.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260073849|gb|EEW62173.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|260078273|gb|EEW65979.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289161257|gb|EFD09153.1| S1 RNA binding domain-containing protein [Enterococcus faecium
           D344SRF]
 gi|291588453|gb|EFF20288.1| S1 RNA binding domain protein [Enterococcus faecium E1071]
 gi|291597321|gb|EFF28507.1| protein tex [Enterococcus faecium U0317]
 gi|291606048|gb|EFF35474.1| protein tex [Enterococcus faecium E1162]
 gi|313644703|gb|EFS09283.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
          Length = 726

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  E+   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKEILTSVQLSEKELGTEEAVEKLTRLSVEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  +       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 622 GLTQPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 720


>gi|157691241|ref|YP_001485703.1| RNA binding transcriptional accessory protein [Bacillus pumilus
           SAFR-032]
 gi|157679999|gb|ABV61143.1| RNA binding transcriptional accessory protein [Bacillus pumilus
           SAFR-032]
          Length = 719

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D  T           +   +      +  +     +G V  V+DFGAFV     +DG
Sbjct: 613 DIVDQLTRPERDPRDEVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDG 672

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           LVHIS+LS   V    DVV  GD V V +   D  +G++ LSM
Sbjct: 673 LVHISKLSNRFVKHPLDVVSVGDIVTVWVDSVDQAKGRVALSM 715


>gi|121727134|ref|ZP_01680308.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae V52]
 gi|121630512|gb|EAX62904.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae V52]
          Length = 355

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           + D+GAFV   G  DGL+HI+ ++ +RV   S++V  GD + VK+L FD DR ++ L +K
Sbjct: 1   LTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLK 59

Query: 689 VVDQNTGKPIV 699
            + ++    I 
Sbjct: 60  QLGEDPWVAIA 70



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 74  PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 132

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 133 DIDEERRRISLGLKQCKANPWQ 154



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 238 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 297

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 298 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 330



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 115 IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 160

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 161 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 219

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 220 AVDAERERISLGIKQMENDP 239


>gi|313632617|gb|EFR99603.1| 30S ribosomal protein S1 [Listeria seeligeri FSL N1-067]
 gi|313637165|gb|EFS02697.1| 30S ribosomal protein S1 [Listeria seeligeri FSL S4-171]
          Length = 381

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I++   V  + +G+VV+++ FGAFV      +GLVHISQ+S + +    +V+ EG+
Sbjct: 262 PWDGISEKASVGSVLEGKVVRLVTFGAFVEIFPGVEGLVHISQISHQHIGTPQEVLSEGE 321

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           T+ VK+L+ ++   ++ LS+K +     + 
Sbjct: 322 TIEVKVLEVNEADKRLSLSIKDLHDAPVEE 351



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           ++  V ++  ++ E E A +    + ++ E   + +G V ++ +FGAFV   G  DGLVH
Sbjct: 158 ENNRVILSHRAVVETEKASQKQALLNEIKEG-DVIEGTVQRLANFGAFVDI-GGVDGLVH 215

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           ISQ+S + +A   + ++EG  V VK++  D    +I LS+K       
Sbjct: 216 ISQISYQHIATPQEALEEGQKVTVKVIGIDPENERISLSIKANLPGPW 263



 Score = 44.1 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           E      G V  V D   +V    ++ DG+V IS+LS   V   SDVV  GDT+ + +  
Sbjct: 14  EEGDKVTGTVTSVEDKQVYVGIPDSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTK 73

Query: 677 FDDRGKIKLSMKVVDQN 693
            +D   + LS + VD  
Sbjct: 74  VEDDVLV-LSKRKVDAE 89


>gi|169824694|ref|YP_001692305.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
 gi|302380254|ref|ZP_07268726.1| S1 RNA binding domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|303235007|ref|ZP_07321631.1| S1 RNA binding domain protein [Finegoldia magna BVS033A4]
 gi|167831499|dbj|BAG08415.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
 gi|302312037|gb|EFK94046.1| S1 RNA binding domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493862|gb|EFL53644.1| S1 RNA binding domain protein [Finegoldia magna BVS033A4]
          Length = 140

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+V  +  FGAFV       GLVHISQ+S + + K  DV+K  D V  K++  +
Sbjct: 5   VGDIVEGKVTGITKFGAFVECEDGTKGLVHISQISNDYIEKVEDVLKVNDVVKCKVMSIE 64

Query: 679 DRGKIKLSMKV 689
           D  KI  S+K 
Sbjct: 65  D-NKISFSIKE 74


>gi|254973804|ref|ZP_05270276.1| putative RNA-binding protein [Clostridium difficile QCD-66c26]
 gi|255091191|ref|ZP_05320669.1| putative RNA-binding protein [Clostridium difficile CIP 107932]
 gi|255312848|ref|ZP_05354431.1| putative RNA-binding protein [Clostridium difficile QCD-76w55]
 gi|255515607|ref|ZP_05383283.1| putative RNA-binding protein [Clostridium difficile QCD-97b34]
 gi|255648701|ref|ZP_05395603.1| putative RNA-binding protein [Clostridium difficile QCD-37x79]
 gi|306518821|ref|ZP_07405168.1| putative RNA-binding protein [Clostridium difficile QCD-32g58]
          Length = 713

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S +L++    ISK +A   +   ++  DF   + +   +     
Sbjct: 472 VVEDSVNSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQ 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       +    K+    I   +  V +++  ++ E
Sbjct: 532 AFTQCAGFMR-ILEGKNPLDNTGVHPE----SYDICKKMIEIIGYSLDDVKNKNIGEIDE 586

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAR 607
               + +      ++   + +G   ++ I+ +      +  ++G   I  + + +IE  +
Sbjct: 587 KIKEIGL-----RELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQ 641

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E               KG +  V+DFGAFV      DGLVH S++S   V     +V  G
Sbjct: 642 E-----------GMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVG 690

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V VK++  D ++ ++ LSMK
Sbjct: 691 DIVDVKVIGIDLNKKRVALSMK 712


>gi|255099305|ref|ZP_05328282.1| putative RNA-binding protein [Clostridium difficile QCD-63q42]
 gi|328887513|emb|CAJ66965.2| putative S1 RNA-binding domain-containing protein [Clostridium
           difficile]
          Length = 713

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S +L++    ISK +A   +   ++  DF   + +   +     
Sbjct: 472 VVEDSVNSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQ 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       +    K+    I   +  V +++  ++ E
Sbjct: 532 AFTQCAGFMR-ILEGKNPLDNTGVHPE----SYDICKKMIEIIGYSLDDVKNKNIGEIDE 586

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAR 607
               + +      ++   + +G   ++ I+ +      +  ++G   I  + + +IE  +
Sbjct: 587 KIKEIGL-----RELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQ 641

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E               KG +  V+DFGAFV      DGLVH S++S   V     +V  G
Sbjct: 642 E-----------GMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVG 690

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V VK++  D ++ ++ LSMK
Sbjct: 691 DIVDVKVIGIDLNKKRVALSMK 712


>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
          Length = 226

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 16/174 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R+   +  LL R  GS+ F++GDT  +  V  G  E                   +N  
Sbjct: 19  LREYGCEQSLLSRPDGSATFLQGDTSVMAGV-YGPAE------------IKVSREIHNKA 65

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   + G P+ +E    +L R     V+  +     ++ IV +I    GS     +
Sbjct: 66  TLEVILRPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCL 125

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
             + + LMDAG+P+     G+   +  DG    I  D +  +          A 
Sbjct: 126 NAACMGLMDAGLPMRALFCGVTCAMDNDG---TITLDPNFRQQKESRAVLTFAI 176



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 71/214 (33%), Gaps = 32/214 (14%)

Query: 28  DGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+     G+T V+A V     +K   +  +   L V  + +T                P
Sbjct: 33  DGSATFLQGDTSVMAGVYGPAEIKVSREIHNKATLEVILRPKT--------------GLP 78

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E    ++I  +   +        T + I +       S     + AA   LM +GLP
Sbjct: 79  AIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCLNAACMGLMDAGLP 138

Query: 145 FEGPVVGAQVDYINGQYV-LNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDA 203
                 G      N   + L+P   + + S          AVL   +E+ +    ++ + 
Sbjct: 139 MRALFCGVTCAMDNDGTITLDPNFRQQKES---------RAVLTFAIESTERKVLMMSNR 189

Query: 204 IIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237
            ++   E +  I A        A E +    +DF
Sbjct: 190 GVYSATELQQCIAA-----AQIASEKLFQFYRDF 218


>gi|154498831|ref|ZP_02037209.1| hypothetical protein BACCAP_02822 [Bacteroides capillosus ATCC
           29799]
 gi|150272221|gb|EDM99425.1| hypothetical protein BACCAP_02822 [Bacteroides capillosus ATCC
           29799]
          Length = 720

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)

Query: 561 DQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           ++     G+G   +R +V E      +  D+    I  + + E++  +  +         
Sbjct: 598 EKAAQACGVGVPTLRDVVGELMKPGRDPRDELPKPILRTDVMEMKDLKPGME-------- 649

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
                G V  V+DFG FV     +DGLVHISQL +  RV   S+V   GD V V +L+ D
Sbjct: 650 ---LTGTVRNVIDFGVFVDIGVHQDGLVHISQLGAGRRVKHPSEVCAVGDIVTVWVLEVD 706

Query: 679 D-RGKIKLSMK 688
           + + +I L+MK
Sbjct: 707 EKKKRISLTMK 717


>gi|288924793|ref|ZP_06418730.1| ribosomal protein S1 [Prevotella buccae D17]
 gi|315607811|ref|ZP_07882804.1| 30S ribosomal protein S1 [Prevotella buccae ATCC 33574]
 gi|288338580|gb|EFC76929.1| ribosomal protein S1 [Prevotella buccae D17]
 gi|315250280|gb|EFU30276.1| 30S ribosomal protein S1 [Prevotella buccae ATCC 33574]
          Length = 592

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQILEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVALDQKINVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 269 FDEEKKRIALGLKQLTPHPW 288



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + +    +  +I +    
Sbjct: 191 HKALIEAELEAQRKEIISKLEKGQILEGTVKNITSYG-----VFVDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            +++   +V    KG+
Sbjct: 246 -WGRVSDPHEVVALDQKINVVILDFDEEKKRIALGLKQLTPHPWDALSADLKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D  K+ 
Sbjct: 305 VVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 365 LGIKQLKEDPWETI 378



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     +   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 373 DPWETIEVKYPIGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTQ 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K ++ N  
Sbjct: 433 GADIDVVVLEIDKENRRLSLGHKQLEDNPW 462



 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+      A+ S  ++  A +   +       N++ +G V+ V      V+     DG++
Sbjct: 16  DEFENGANANVSKEDLAKAYDETLNKISE---NQVVEGTVISVDKKEVVVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V + +  D +G++ LS K
Sbjct: 73  PASEFRY----NPE--LKVGDKVEVYVENQEDKKGQLVLSHK 108


>gi|222056619|ref|YP_002538981.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
 gi|221565908|gb|ACM21880.1| RNA binding S1 domain protein [Geobacter sp. FRC-32]
          Length = 403

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLA--EIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             I +    ++    +    +  S  A  E EAA++       + E   + +G +  + D
Sbjct: 158 DVIGKHLSFRITEYGENGRNLVLSHRAILEEEAAKQKEAQKEILKEGMTV-RGTITSIRD 216

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV   G+ +GL+ IS+L   RV   S+V+  G  V V +   D +  +I  S+K   
Sbjct: 217 FGAFVSI-GSIEGLLPISELGWTRVKDVSEVLSVGQNVEVVVKQIDWEHDRISFSLKDTL 275

Query: 692 QNTGKPIV 699
            +    + 
Sbjct: 276 ADPWDNVA 283



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 9/254 (3%)

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL----GHMDFKVAGTDSGITAMQMDM 507
           G+P+   V     G  +      + +     +  +       D         IT    + 
Sbjct: 116 GIPVDGHVEKEVKGGFEVKISGSVRAFCPYSQIAMRRLDNGADVIGKHLSFRITEYGENG 175

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
           +   +S   ++      ++     + +    +  +   + +F   V I +I      + +
Sbjct: 176 RNLVLSHRAILEEEAAKQKEAQKEILKEGMTVRGTITSIRDFGAFVSIGSIEGLLPISEL 235

Query: 568 GMGGKVIRGIVEQTGAKVNI--DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           G         V   G  V +            S   +   A        + PE +  ++G
Sbjct: 236 GWTRVKDVSEVLSVGQNVEVVVKQIDWEHDRISFSLKDTLADPWDNVAANYPEGS-FHRG 294

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           QV ++  FGAFV      DGL+HIS+L + +R+    +V+KEG+TV VK+   D +  ++
Sbjct: 295 QVARLAQFGAFVTLASGIDGLIHISKLGAGKRINHPREVLKEGETVEVKVESVDRENRRL 354

Query: 684 KLSMKVVDQNTGKP 697
            LS+  V +   + 
Sbjct: 355 SLSLAEVSRAAEEE 368


>gi|161833643|ref|YP_001597839.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri GWSS]
 gi|152206132|gb|ABS30442.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri GWSS]
          Length = 614

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R +    E  ++ +G V  +  +G+F+   G  DGL HI+ +S ER+   S+ ++ G
Sbjct: 224 KKKRKLISKLEKGQVLRGIVKNITHYGSFIDIGGGIDGLCHITDISWERIEHPSEKLEIG 283

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            T+   +L  D  + +++L +K +  N  
Sbjct: 284 QTINFVILSIDKIKNRVQLGLKQLQSNPW 312



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTS---DVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           D+GAFV      +GLVH+S++S  +  K       VK GD + V +L++D    K+ LS+
Sbjct: 334 DYGAFVEIFPGVEGLVHVSEMSWSKTKKLRSSQSFVKIGDKIKVLILNYDISDQKMSLSL 393

Query: 688 KVVDQNTGKPI 698
           K +  +  + I
Sbjct: 394 KRLTPDPWENI 404


>gi|124267431|ref|YP_001021435.1| 30S ribosomal protein S1 [Methylibium petroleiphilum PM1]
 gi|124260206|gb|ABM95200.1| SSU ribosomal protein S1P [Methylibium petroleiphilum PM1]
          Length = 571

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           ++++    GK +   V +   K N      V ++  ++ E     E  + +  + E    
Sbjct: 151 VKDMTPFEGKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLLGTLREGA-F 204

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++ 
Sbjct: 205 VNGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTVGQELTAKVLKFDAEKN 263

Query: 682 KIKLSMKVVDQNTG 695
           ++ L +K +  +  
Sbjct: 264 RVSLGLKQMGDDPW 277



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++  + D+GAFV      +GLVH+S++    +    S +V  G+ V V +L+ D D+ +
Sbjct: 292 GKITNIADYGAFVEIEPGIEGLVHVSEMDWTNKNIAPSKLVTLGEEVEVMVLEIDEDKRR 351

Query: 683 IKLSMKVVDQNTGKP 697
           I L MK    N    
Sbjct: 352 ISLGMKQCKANPWDE 366



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 87/258 (33%), Gaps = 34/258 (13%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
               G+VK+  ++    D+ G +   H+  M ++     S +  +  +     ++  ++ 
Sbjct: 203 AFVNGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVTVGQE-----LTAKVLK 257

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P    +      I +      I  G + 
Sbjct: 258 FDAEKNRVSL-----GLKQMGDDPWVGVSRRYPTGTRLFGKITNIADYGAFVEIEPGIEG 312

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE---------------MIRSITDVPE 618
           +  + E      NI     V +       +    E                        +
Sbjct: 313 LVHVSEMDWTNKNIAPSKLVTLGEEVEVMVLEIDEDKRRISLGMKQCKANPWDEFAQNHK 372

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDF 677
                KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   +L  
Sbjct: 373 RGDKLKGPVKSITDFGVFVGLAAGIDGLVHLSDLSWHEPGEAAVRNYKKGQEVEALVLAI 432

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R +I L +K +D + 
Sbjct: 433 DVERERISLGIKQLDGDP 450



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T + +      G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 449 DPFATFTTLNDRGATVTGKVKTVDARGAEIQLTDDVTGYLRASEISRDRVEDARNVLKEG 508

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 509 DEVTALIINVDRKTRSIQLSIKAKD 533


>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
 gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
           NRRL3357]
 gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae]
 gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
           NRRL3357]
          Length = 269

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 6/161 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL---GTREDEQYVDSL 366
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V     G R D       
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATG--GA 69

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +G+      +  N    A  +  R  G   ++        R A    L        T+ I
Sbjct: 70  AGSSGAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISI 129

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
              +  +DGS   A +   +LAL+DAG+P+   + G   G+
Sbjct: 130 HVSVLSADGSLLAAAINACTLALVDAGIPMPGLLCGCTAGM 170



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG--------QDFFPLTVNYQERTYAVGKIPGGYL 78
           S G+     G T ++ +V      + G             + V+     +A     G   
Sbjct: 37  SSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSSGAVVEVDVNVAGFA-----GVDR 91

Query: 79  RRESRPTEN-EILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAAS 135
           +R +  ++     I+  +  + +          +   + ++V+  D   S    ++ A +
Sbjct: 92  KRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIHVSVLSADG--SLLAAAINACT 149

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVL-NPRLDE----------DQGSLDLFVSGTQDA 184
            AL+ +G+P  G + G             +PR DE          ++  L     GT  +
Sbjct: 150 LALVDAGIPMPGLLCGCTAGMSGSASTPRDPRNDELDPLLDLSLPEEQELPFLTVGTTTS 209

Query: 185 VLMVELEANQLSED 198
           V + E   +   ED
Sbjct: 210 VPVGENAMDDDEED 223


>gi|255305090|ref|ZP_05349262.1| putative RNA-binding protein [Clostridium difficile ATCC 43255]
          Length = 713

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    +  +S +L++    ISK +A   +   ++  DF   + +   +     
Sbjct: 472 VVEDSVNSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQ 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+       +    K+    I   +  V +++  ++ E
Sbjct: 532 AFTQCAGFMR-ILEGKNPLDNTGVHPE----SYDICKKMIEIIGYSLDDVKNKNIGEIDE 586

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAR 607
               + +      ++   + +G   ++ I+ +      +  ++G   I  + + +IE  +
Sbjct: 587 KIKEIGL-----RELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKIEDIQ 641

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E               KG +  V+DFGAFV      DGLVH S++S   V     +V  G
Sbjct: 642 E-----------GMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVG 690

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           D V VK++  D ++ ++ LSMK
Sbjct: 691 DIVDVKVIGIDLNKKRVALSMK 712


>gi|307128513|ref|YP_003880543.1| putative 30S ribosomal protein S1 [Candidatus Sulcia muelleri CARI]
 gi|306482975|gb|ADM89845.1| putative 30S ribosomal protein S1 [Candidatus Sulcia muelleri CARI]
          Length = 574

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               S+    +  +I KG V  + D+GAFV      +GLVH+S++S  +++      VK 
Sbjct: 304 HPWNSLEKKIKTGEIVKGTVTVITDYGAFVEIFPGVEGLVHVSEMSWAQQLRSAQYFVKI 363

Query: 667 GDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           GD + V +L++ +   K+ LSMK +  +  + I
Sbjct: 364 GDKIKVLILNYSNSEKKMSLSMKRLTPDPWENI 396



 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 62/142 (43%), Gaps = 9/142 (6%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            + I P +  +        +  I+E    K+N      V      + +     +  + + 
Sbjct: 173 QIDIKPVKDFDYF------VGKIIEGKVVKINNKTKNVVVSHKILIEKKL--EKSKKKLI 224

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E  ++ +G V  +  +G+F+   G  DGL HI+ +S ER+   S+ ++ G  +   +
Sbjct: 225 SILEKGQVLRGIVKNLTHYGSFIDVGGGIDGLCHITDISWERIEHPSEKLEIGQIMNFVI 284

Query: 675 LDFDD-RGKIKLSMKVVDQNTG 695
           L  D+ + +++L +K +  +  
Sbjct: 285 LSIDNTKNRLQLGLKQLQSHPW 306



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I    ++  I+ G V      G  +      +GL++ S +S  +++ ++S++ K+
Sbjct: 391 DPWENIEKKYKLGSIHIGTVKIFNKIGVRLELEAGIEGLLYTSDISWIKKLKQSSEIYKK 450

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           GD V V +L  D    ++ L  K + QN  + +
Sbjct: 451 GDLVKVIVLGLDVITRRLNLGCKQLIQNPWEKL 483


>gi|260590941|ref|ZP_05856399.1| ribosomal protein S1 [Prevotella veroralis F0319]
 gi|260536806|gb|EEX19423.1| ribosomal protein S1 [Prevotella veroralis F0319]
          Length = 591

 Score = 83.0 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 159 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV     + V +LD
Sbjct: 213 LEKGQILEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVALDQKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 272 FDEEKKRIALGLKQLTPHPW 291



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 134 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 193

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + +    +  ++ +    
Sbjct: 194 HKALIEAELEAQRKEIISHLEKGQILEGTVKNITSY-----GVFVDLGGVDGLVHITDLS 248

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            S+    +V    KG+
Sbjct: 249 -WGRVSDPHEVVALDQKINVVILDFDEEKKRIALGLKQLTPHPWDSLDPNLKVGDHVKGK 307

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D +  K+ 
Sbjct: 308 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDREERKMS 367

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 368 LGIKQLKEDPWETI 381



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 376 DPWETIEVKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTQ 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D +  ++ L  K ++ N    
Sbjct: 436 GADIDVVVLEIDKENRRLSLGHKQLETNPWDE 467



 Score = 39.1 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A+    ++  + E +++ +G V+        V+     DG++  S+            +K
Sbjct: 35  AKAYNETLNKIQE-HQVVEGTVISADKKEVVVNIGYKSDGIIPASEFRY----NPD--LK 87

Query: 666 EGDTVWVKLLDF-DDRGKIKLSMKVV-DQNTGKPI 698
            GD V V +    D RG++ LS K    Q + + I
Sbjct: 88  PGDKVEVYVESQEDKRGQLVLSHKKARLQKSWENI 122


>gi|307292731|ref|ZP_07572577.1| ribosomal protein S1 [Sphingobium chlorophenolicum L-1]
 gi|306880797|gb|EFN12013.1| ribosomal protein S1 [Sphingobium chlorophenolicum L-1]
          Length = 570

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  +I +G V  + D+GAFV   G  DGL+H++
Sbjct: 172 GNIVVSRRAILEETRAEQRSGLIQTLAEG-QIIEGVVKNITDYGAFVDL-GGIDGLLHVT 229

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            LS +R+   ++++  GDTV V+++  + D  +I L MK ++ +  +
Sbjct: 230 DLSYKRINHPNEMINIGDTVRVQIIRINRDTQRISLGMKQLESDPWE 276



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           +      +NI D   V+I   +           +   +          V     G+V  +
Sbjct: 236 INHPNEMINIGDTVRVQIIRINRDTQRISLGMKQLESDPWEGAAAKYPVGAKLSGRVTNI 295

Query: 631 MDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            ++GAFV      +GLVH+S++S  ++      +V     V V +L+ D ++ +I L +K
Sbjct: 296 TEYGAFVELEAGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVIVLEVDPEKRRISLGLK 355

Query: 689 VVDQNTG 695
               N  
Sbjct: 356 QAQNNPW 362



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +A      S  +   +    +G+V    +FG F+   G  DG+VH+S ++        D 
Sbjct: 356 QAQNNPWDSFAERHPIGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWG--ISGEDA 413

Query: 664 V---KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +   ++G+TV   +LD D ++ +I L MK ++
Sbjct: 414 LALHRKGETVQAVVLDIDVEKERISLGMKQLE 445


>gi|303236579|ref|ZP_07323161.1| Tex-like protein N-terminal domain protein [Prevotella disiens
           FB035-09AN]
 gi|302483232|gb|EFL46245.1| Tex-like protein N-terminal domain protein [Prevotella disiens
           FB035-09AN]
          Length = 718

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 14/164 (8%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HI+  M+K  + S  +L      ++ + +   Q + V       I   +E+ G       
Sbjct: 567 HIVEAMAKDKNCSVSELISNKEALKQIDLKHYQSQEVGLPTLNDILNELEKPGRD----- 621

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
                       E       + SI D+ E  ++  G V  + +FGAFV     +DGLVH+
Sbjct: 622 -------PREQLEAFEFDASVHSIEDLKEGMEL-PGIVTNITNFGAFVDLGVHQDGLVHV 673

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           SQL+ + V+  + +V     V V++++ D  R +I LSMK V Q
Sbjct: 674 SQLANKFVSDPTTIVHLHQHVRVRVMEVDLRRHRIALSMKGVSQ 717


>gi|281423107|ref|ZP_06254020.1| protein YhgF [Prevotella oris F0302]
 gi|281402443|gb|EFB33274.1| protein YhgF [Prevotella oris F0302]
          Length = 707

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQ++ + +   ++VVK    V V++++ D  R +I
Sbjct: 639 GIVTNITNFGAFVDIGVHQDGLVHISQMADKFIKDPNEVVKLHQHVRVRVIEVDLRRKRI 698

Query: 684 KLSMK 688
            LSM+
Sbjct: 699 ALSMR 703


>gi|320115997|ref|YP_004186156.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319929088|gb|ADV79773.1| RNA binding S1 domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 367

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +  A +  +     ++  +   +    L    F P  ++     D++   +G   
Sbjct: 93  LSREKIEKAYKNEEIIEGEVIEVVKGGVIAYSLGAKVFIPASQLELHYVDKLNEYLGKTL 152

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + +R I    G K+       +K+            ++ +++    +   I +G+V  ++
Sbjct: 153 R-LRIIEYIPGKKIVGSQKEVLKL---------EREKVKKALLSNLKEGDIVEGKVKNII 202

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           D GAFV   G  DG + +S++S ER+    +V+  GD V V +L+ D++  KI LS++ V
Sbjct: 203 DKGAFVDIGGF-DGFIPLSEISWERIKNPREVLGIGDKVSVYILNVDEKKEKITLSLRKV 261

Query: 691 DQNTGK 696
             +  +
Sbjct: 262 LPDPWE 267



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +         + KG V  +  FG FV      +GL+H + L       +    K  
Sbjct: 264 DPWENAETKYHEGDVLKGTVTNITPFGVFVQLEPGIEGLIHKNDL-----ENSIKTYKIN 318

Query: 668 DTVWVKLLDFDDR-GKIKL 685
           DT+ V++L+ + +  KI L
Sbjct: 319 DTIKVEILNINQQDKKINL 337


>gi|256830726|ref|YP_003159454.1| 30S riboosomal protein S1 [Desulfomicrobium baculatum DSM 4028]
 gi|256579902|gb|ACU91038.1| ribosomal protein S1 [Desulfomicrobium baculatum DSM 4028]
          Length = 593

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  ++D+GAFV      +GLVHIS++S  R +   S +V+ GD V V +L
Sbjct: 291 PEGHKL-SGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPSQMVRPGDEVDVIIL 349

Query: 676 DFD-DRGKIKLSMKVVDQNTG 695
             D DR +I L MK V  N  
Sbjct: 350 GVDVDRKRISLGMKQVAPNPW 370



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 18/251 (7%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM-- 519
           I  G V   DD  IL D++      G +       +  +T    D     +         
Sbjct: 40  IVSGEVVKIDDSYILVDVNF--KSEGQIPLDEFMENGQVTVKVGDTVDVYVVRKNEREGS 97

Query: 520 -ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
             L + K  R+ +L+E+ K+L    + +G    R++   +   +       G  V    V
Sbjct: 98  IVLSREKAKRMQVLDELEKLLDSGDVVVGRIVRRIKGGYVVEIKGIEAFLPGSHVDLRPV 157

Query: 579 EQTGAKVNIDDDGTVKIASSSLA----------EIEAAREMIRSITDVPEVNKIYKGQVV 628
               A VN D +  V   +   +          E +  R+    +T + E   +  G V 
Sbjct: 158 PDMDALVNQDFEFRVLKINRRRSNVIVSRRVLLEEDRDRKRGELLTTLEEGQSVV-GVVK 216

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + ++G F+   G  DGL+HI+ +S +R+    ++V+ GD + +K+L FD D  K+ L +
Sbjct: 217 NITEYGVFIDL-GGLDGLLHITDMSWKRIKHPKEMVQLGDELTLKVLSFDKDEKKVSLGL 275

Query: 688 KVVDQNTGKPI 698
           K +  +    I
Sbjct: 276 KQLVMDPWANI 286



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    + +   V  +  G +  + DFG FV      +GLVH+S++S +++    +   
Sbjct: 453 ADDPWLDVPNRYPVGTMLTGTITNITDFGLFVEVEEGIEGLVHVSEMSKKKIKSPKEAFN 512

Query: 666 EGDTVWVKLLDF--DDRGKIKLSMKVVDQN 693
           EGD +  K++    D+R ++ LS+K  +  
Sbjct: 513 EGDAIEAKVIHVSADER-RLGLSLKAQEPE 541



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
           A      + +      I +  V  + +FG F+      DGL+H+S LS  +++   +++ 
Sbjct: 366 APNPWDLVAEKYPEGTILEASVKNITEFGLFIGIEDGIDGLIHVSDLSWTKKIRHPNELY 425

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           K GD V  K+L  D +  K  L +K +  +    +
Sbjct: 426 KVGDVVRAKVLTVDKENEKFTLGIKQLADDPWLDV 460


>gi|167037582|ref|YP_001665160.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856416|gb|ABY94824.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
          Length = 365

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +  A +  +     ++  +   +    L    F P  ++     D++   +G   
Sbjct: 91  LSREKIEKAYKNEEIIEGEVIEVVKGGVIAYSLGAKVFIPASQLELHYVDKLNEYLGKTL 150

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + +R I    G K+       +K+            ++ +++    +   I +G+V  ++
Sbjct: 151 R-LRIIEYIPGKKIVGSQKEVLKL---------EREKVKKALLSNLKEGDIVEGKVKNII 200

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           D GAFV   G  DG + +S++S ER+    +V+  GD V V +L+ D++  KI LS++ V
Sbjct: 201 DKGAFVDIGGF-DGFIPLSEISWERIKNPREVLGIGDKVSVYILNVDEKKEKITLSLRKV 259

Query: 691 DQNTGK 696
             +  +
Sbjct: 260 LPDPWE 265



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +         + KG V  +  FG FV      +GL+H + L       +    K  
Sbjct: 262 DPWENAETKYHEGDVLKGTVTNITPFGVFVQLEPGIEGLIHKNDL-----ENSIKTYKIN 316

Query: 668 DTVWVKLLDFDDR-GKIKL 685
           DT+ V++L+ + +  KI L
Sbjct: 317 DTIKVEILNINQQDKKINL 335


>gi|194477089|ref|YP_002049268.1| 30S ribosomal protein S1 [Paulinella chromatophora]
 gi|171192096|gb|ACB43058.1| 30S ribosomal protein S1 [Paulinella chromatophora]
          Length = 330

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 201 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHTVLNV 259

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 260 NDQMKVMIIDLDAERGRISLSTKALEPEPG 289


>gi|294501660|ref|YP_003565360.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|295707008|ref|YP_003600083.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294351597|gb|ADE71926.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
 gi|294804667|gb|ADF41733.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 133

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+  + KG+V  +  +GAFV       GLVHIS++    V   ++ +  GD V VK+L  
Sbjct: 5   EIGTVTKGKVTGIQPYGAFVALNEETQGLVHISEVKHGFVKDINEHLSVGDEVNVKVLSV 64

Query: 678 DDR-GKIKLSMKVVDQNTGK 696
           D+  GKI LS++  +    K
Sbjct: 65  DESTGKIGLSIRATEPAPEK 84


>gi|291572098|dbj|BAI94370.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
          Length = 398

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D DRG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDADRGRISLSTKQLEPEPG 272


>gi|15982885|gb|AAL09789.1| AT4g29060/F19B15_90 [Arabidopsis thaliana]
 gi|18377634|gb|AAL66967.1| unknown protein [Arabidopsis thaliana]
 gi|20465639|gb|AAM20288.1| unknown protein [Arabidopsis thaliana]
          Length = 455

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTV-----KIASSSLAEIEAAREMIRSITDVPEVNKI-- 622
           G  V+  + EQ    V  +D  TV        + +      AR   +S     +  ++  
Sbjct: 76  GTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVP 135

Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
              + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  +I L+M+  D    +
Sbjct: 196 ESKRISLTMRENDDPPKR 213



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---SDVVKEGDTVWVKLLDF 677
           ++  G V  +   GAF+      +G +  ++ + + +         ++ G  V V++L  
Sbjct: 249 QMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEADDGIGSMMMGGSSLQAGQEVKVRVLRI 308

Query: 678 DDRGKIKLSMKVVDQNTGK 696
             RG++ L+MK  +++ GK
Sbjct: 309 -ARGRVTLTMK--EEDDGK 324


>gi|212694923|ref|ZP_03303051.1| hypothetical protein BACDOR_04460 [Bacteroides dorei DSM 17855]
 gi|212662483|gb|EEB23057.1| hypothetical protein BACDOR_04460 [Bacteroides dorei DSM 17855]
          Length = 747

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 14/163 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +++K LS +  +L +       + I       V   G   +  I+++      +D  
Sbjct: 598 IVEQIAKDLSCTVDELIKSKELRSRIDIKKYVTPTV---GLPTLTDIIQE------LDKP 648

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G        + E +   + I  +T+  E+  I       + +FG FV       GLVH+S
Sbjct: 649 GRDPRQQIQVFEFDKNVKTIEDLTEGMELPGIVNN----ITNFGCFVDIGIKEKGLVHVS 704

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           QL+ + V+  + VV     V VK++  D +R +I+L+MK ++Q
Sbjct: 705 QLADKFVSDPTTVVSIHQHVRVKVMSIDLERKRIQLTMKGLNQ 747


>gi|149278739|ref|ZP_01884874.1| 30S ribosomal protein S1 [Pedobacter sp. BAL39]
 gi|149230358|gb|EDM35742.1| 30S ribosomal protein S1 [Pedobacter sp. BAL39]
          Length = 644

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N +    V      + +   ++++   I    E  ++ +G V  + DFG F+ 
Sbjct: 217 EFKVVKINHEFKNVVVSHKILIEDDLESQKV--EIVSKLEKGQVLEGTVKNITDFGVFID 274

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S  R+    +V+   + + V +LDFDD + +I L +K +  +  + 
Sbjct: 275 L-GGVDGLLHITDISWGRIEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWES 333

Query: 698 I 698
           +
Sbjct: 334 L 334



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++  +++ +   +   +   V  + +FG FV      DGL+HIS LS  ++V   ++  K
Sbjct: 415 QDPWQNVAERYPIGSKHTAVVKNMTNFGVFVEIEEGIDGLIHISDLSWSKKVNHPNEFTK 474

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GDT+ V +L+ D +  K+ L  K +++N  
Sbjct: 475 VGDTLDVVVLELDVESRKLSLGHKQLEENPW 505



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 91/252 (36%), Gaps = 20/252 (7%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G VK      ++ DI G E  L      +         +   M+   +   I        
Sbjct: 174 GFVKSRTKGGLIVDIMGVEAFLPGSQIDIKPIRDYDVYVGKTMEFKVV--KINHEFKNVV 231

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------KVIRG 576
              ++ I +++     E   +L +    +E            I +GG         +  G
Sbjct: 232 VSHKILIEDDLESQKVEIVSKLEK-GQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWG 290

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI-------YKGQVVK 629
            +E     +++D+   V +      +   A  + +      E            KG++V 
Sbjct: 291 RIEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWESLDTNLTVGSKVKGKIVT 350

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V D+GAF+      +GL+H+S++S  +      + +K  D +  ++L  D D  K+ L +
Sbjct: 351 VADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVSDEIEAEVLTLDRDERKMSLGI 410

Query: 688 KVVDQNTGKPIV 699
           K + Q+  + + 
Sbjct: 411 KQLTQDPWQNVA 422


>gi|126698570|ref|YP_001087467.1| putative 30S ribosomal protein S1 [Clostridium difficile 630]
 gi|255091922|ref|ZP_05321400.1| putative 30S ribosomal protein S1 [Clostridium difficile CIP
           107932]
 gi|255100021|ref|ZP_05328998.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-63q42]
 gi|255305908|ref|ZP_05350080.1| putative 30S ribosomal protein S1 [Clostridium difficile ATCC
           43255]
 gi|255516341|ref|ZP_05384017.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-97b34]
 gi|255649441|ref|ZP_05396343.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-37x79]
 gi|260682607|ref|YP_003213892.1| putative 30S ribosomal protein S1 [Clostridium difficile CD196]
 gi|260686207|ref|YP_003217340.1| putative 30S ribosomal protein S1 [Clostridium difficile R20291]
 gi|306519520|ref|ZP_07405867.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-32g58]
 gi|115250007|emb|CAJ67827.1| 30S ribosomal protein S1 [Clostridium difficile]
 gi|260208770|emb|CBA61640.1| putative 30S ribosomal protein S1 [Clostridium difficile CD196]
 gi|260212223|emb|CBE02927.1| putative 30S ribosomal protein S1 [Clostridium difficile R20291]
          Length = 424

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-REMIRSITDVPEVNKIYKGQVVKVMD 632
           I    E+  A++  + +           E +A  +     + +  EV +   G+V K+M 
Sbjct: 187 INKEREERRAQIKAEKEAERARIKQEREEEKARIKAAKEDLFNSLEVGQKRDGKVTKIMP 246

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV   G  +GL HI+ L+  RV    DVV EG  V V +LD + +  KI L++K ++
Sbjct: 247 YGAFVDI-GGIEGLAHINNLAWTRVESVEDVVSEGQEVEVYVLDVNKETKKIALALKDIN 305

Query: 692 QNTG 695
            +  
Sbjct: 306 NDPW 309



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I    +++ +   +V+++++ GAFV      D  + IS+LS  RVAK ++VV  G
Sbjct: 307 DPWDLIAKEVQIDDVVNAKVLRIIEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIG 366

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           D V VK+LDF  +  ++ +S+K   +   + I
Sbjct: 367 DEVKVKILDFKPKTKRMLVSIKEATREPEEDI 398



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++   +    +    +V ++  G++  V +    +      DG++ IS+L+ E+     D
Sbjct: 10  MQELLDQQEQVFSKVKVGELTTGKITAVRNDEVQLGLDYGFDGIIPISELNIEKNQYIED 69

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           +   GD +   +     + G I LS   +D+
Sbjct: 70  IYHIGDEITAVITKVSQKDGTITLSKLQLDK 100


>gi|291523999|emb|CBK89586.1| Transcriptional accessory protein [Eubacterium rectale DSM 17629]
          Length = 786

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIY 623
           +  G+G   +R IV++             K A     ++                   + 
Sbjct: 598 DEAGVGEITLRDIVKELE-----------KPARDPREDMPKPILRSDVLEMKDLTPGMVL 646

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFG FV     +DGLVHIS++    +    + V  GD V V+++  D  + +
Sbjct: 647 KGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQR 706

Query: 683 IKLSMKVVDQNTGK 696
           I+L+MK + Q T K
Sbjct: 707 IQLTMK-IGQGTDK 719


>gi|291528539|emb|CBK94125.1| Transcriptional accessory protein [Eubacterium rectale M104/1]
          Length = 786

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIY 623
           +  G+G   +R IV++             K A     ++                   + 
Sbjct: 598 DEAGVGEITLRDIVKELE-----------KPARDPREDMPKPILRSDVLEMKDLTPGMVL 646

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFG FV     +DGLVHIS++    +    + V  GD V V+++  D  + +
Sbjct: 647 KGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQR 706

Query: 683 IKLSMKVVDQNTGK 696
           I+L+MK + Q T K
Sbjct: 707 IQLTMK-IGQGTDK 719


>gi|238923236|ref|YP_002936751.1| transcription accessory protein [Eubacterium rectale ATCC 33656]
 gi|238874910|gb|ACR74617.1| transcription accessory protein [Eubacterium rectale ATCC 33656]
          Length = 786

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIY 623
           +  G+G   +R IV++             K A     ++                   + 
Sbjct: 598 DEAGVGEITLRDIVKELE-----------KPARDPREDMPKPILRSDVLEMKDLTPGMVL 646

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           KG V  V+DFG FV     +DGLVHIS++    +    + V  GD V V+++  D  + +
Sbjct: 647 KGTVRNVIDFGCFVDIGVHQDGLVHISEICDRYIKHPLEAVSVGDIVDVQVMSVDLKKQR 706

Query: 683 IKLSMKVVDQNTGK 696
           I+L+MK + Q T K
Sbjct: 707 IQLTMK-IGQGTDK 719


>gi|291279040|ref|YP_003495875.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
 gi|290753742|dbj|BAI80119.1| transcription accessory protein [Deferribacter desulfuricans SSM1]
          Length = 707

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 570 GGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           G   ++ I++       +I DD           +    ++   +I ++ E  K+ +G+V 
Sbjct: 597 GLLTLQDIIDNFEKPDRDIRDD----------VDPLIFKQSALNIENLKEGMKV-RGKVT 645

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V DFGAFV      D LVHIS+L+ + V    DVV  GD V   ++  D DR ++ LS+
Sbjct: 646 NVTDFGAFVDIGLKNDALVHISELADKFVKHPLDVVSVGDNVLATVIKVDKDRNRVSLSL 705

Query: 688 K 688
           +
Sbjct: 706 R 706


>gi|254974534|ref|ZP_05271006.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-66c26]
 gi|255313657|ref|ZP_05355240.1| putative 30S ribosomal protein S1 [Clostridium difficile QCD-76w55]
          Length = 421

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-REMIRSITDVPEVNKIYKGQVVKVMD 632
           I    E+  A++  + +           E +A  +     + +  EV +   G+V K+M 
Sbjct: 184 INKEREERRAQIKAEKEAERARIKQEREEEKARIKAAKEDLFNSLEVGQKRDGKVTKIMP 243

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV   G  +GL HI+ L+  RV    DVV EG  V V +LD + +  KI L++K ++
Sbjct: 244 YGAFVDI-GGIEGLAHINNLAWTRVESVEDVVSEGQEVEVYVLDVNKETKKIALALKDIN 302

Query: 692 QNTG 695
            +  
Sbjct: 303 NDPW 306



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I    +++ +   +V+++++ GAFV      D  + IS+LS  RVAK ++VV  G
Sbjct: 304 DPWDLIAKEVQIDDVVNAKVLRIIEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIG 363

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           D V VK+LDF  +  ++ +S+K   +   + I
Sbjct: 364 DEVKVKILDFKPKTKRMLVSIKEATREPEEDI 395



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++   +    +    +V ++  G++  V +    +      DG++ IS+L+ E+     D
Sbjct: 7   MQELLDQQEQVFSKVKVGELTTGKITAVRNDEVQLGLDYGFDGIIPISELNIEKNQYIED 66

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           +   GD +   +     + G I LS   +D+
Sbjct: 67  IYHIGDEITAVITKVSQKDGTITLSKLQLDK 97


>gi|196475694|gb|ACG76403.1| transcription factor-like 1 (predicted) [Otolemur garnettii]
          Length = 480

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 630 VMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKL 685
           V D+GAFV   G  + GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ L
Sbjct: 134 VTDYGAFVKIPGCRKQGLVHQTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVFL 193

Query: 686 SMKVVDQNTGKPI 698
           SMKVV+Q TGK +
Sbjct: 194 SMKVVNQGTGKDL 206


>gi|167950655|ref|ZP_02537729.1| RNA binding S1 domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 130

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +FGAFV     +DGLVHISQL+   V    +VVK GD V VK+++ D +R ++ LSM++ 
Sbjct: 23  NFGAFVDIGVHQDGLVHISQLADRFVKDPREVVKAGDLVKVKVMEVDLERKRVGLSMRLQ 82

Query: 691 DQNTGKP 697
           ++   +P
Sbjct: 83  ERAEREP 89


>gi|330752286|emb|CBL87241.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
          Length = 740

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I +     GK +   V     K+N      V    + +    A  E    I   
Sbjct: 188 QIDIKPIIDYDAYVGKTMEFKV----VKINEAIKNAVVSHKALIESDLA--EQRELIIGG 241

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R+   S+V++    + V +LD
Sbjct: 242 LEKGQVLEGTVKNLTDFGAFMDL-GGVDGLLYITDISWGRINHPSEVLELNQNLNVVVLD 300

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+ + +I L +K +  +  +
Sbjct: 301 FDENKKRISLGLKQLQPHPWE 321



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            + ++  +KV   D    K++ S     E   +    I+++      + G+V  +  +G 
Sbjct: 376 TLQQEFESKVVTIDRDDRKMSLSVKQLSE---DPWDKISEMFPNGSKHSGEVKNLTPYGV 432

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV       G+VHIS LS  +R +  S+  K G+T+ V +L+ D D  K+ L  K +++N
Sbjct: 433 FVELKEGIGGMVHISDLSWTKRYSHPSEFTKVGETIDVTILEVDQDSRKLSLGHKQLEEN 492

Query: 694 TG 695
             
Sbjct: 493 PW 494



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
                +     +  + KG++V + D+GAF+      +GL+H+S++S   +     +    
Sbjct: 318 HPWEVLPADVNIGSVVKGKIVNIEDYGAFLEIIPGVEGLIHVSEVSWSNQPVNAREFFTL 377

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
                 K++  D D  K+ LS+K + ++    I
Sbjct: 378 QQEFESKVVTIDRDDRKMSLSVKQLSEDPWDKI 410



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G     S S  EIE               N+I  G+V  + D    +      DGLV +S
Sbjct: 48  GNKHTLSYSEQEIEDYLNQYEQSLSTIGQNEIVLGKVTAIHDGDVVLDVNYKSDGLVSLS 107

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           +          D +K GD V V + D +D RG++ LS K
Sbjct: 108 EFR-----DMPD-LKIGDEVQVYVEDKEDLRGQLVLSRK 140


>gi|311746351|ref|ZP_07720136.1| S1 RNA binding domain protein [Algoriphagus sp. PR1]
 gi|311302504|gb|EAZ79567.2| S1 RNA binding domain protein [Algoriphagus sp. PR1]
          Length = 760

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++          +    A E   +     +      G V  +  FGAFV     +DG
Sbjct: 616 DILEELAKPGRDPRESFEVFAFEESVNSIGDLKTGMKLPGVVTNITAFGAFVDVGVHQDG 675

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           LVH+S L+   V   +++V     V V +++ D  R +I LSMK
Sbjct: 676 LVHLSHLADRFVKDPNEIVTVNQKVQVTVMEVDIPRNRIGLSMK 719


>gi|302669575|ref|YP_003829535.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394048|gb|ADL32953.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 890

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPE 618
             ++   +G+G   +  I+ +             K +      + A             +
Sbjct: 671 KKKLAEELGIGEITLTDILSELE-----------KPSRDPRENMPAPILRSDVLDMKDLK 719

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I KG V  V+DFG FV     +DGLVHIS ++ + +    + V  GD V V++LD +
Sbjct: 720 PGMILKGTVRNVIDFGCFVDIGVHQDGLVHISHITDKFIKHPLEAVSVGDIVDVQVLDVE 779

Query: 679 -DRGKIKLSMKVVDQ 692
            D+ +I L+MK+ D 
Sbjct: 780 LDKKRIALTMKLGDP 794


>gi|295111885|emb|CBL28635.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Synergistetes bacterium SGP1]
          Length = 146

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           E  R  T    V  +    V ++M +GAFV+     + G++HIS+LS   V K  DV+  
Sbjct: 3   EEKREDTSSVRVGDLVDCVVSQIMPYGAFVNLTESGKRGMIHISELSFNFVKKVEDVLSL 62

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
              V  K++  DD+G+I LS+K  ++  
Sbjct: 63  QQNVKAKVIKIDDKGRIDLSLKKAEERP 90


>gi|323345184|ref|ZP_08085408.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269]
 gi|323094454|gb|EFZ37031.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269]
          Length = 590

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQK--KEIISK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVALDQKINVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 269 FDEEKKRIALGLKQLTPHPW 288



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 373 DPWETIEEKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTQ 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K ++ N  
Sbjct: 433 GAEIEVVVLEIDKENRRLSLGHKQLEDNPW 462



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  +VL  +   +  +      + +    +  +I +    
Sbjct: 191 HKALIEAELEAQKKEIISKLEKGQVLEGTVKNITSYG-----VFVDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 246 -WGRVSDPHEVVALDQKINVVILDFDEEKKRIALGLKQLTPHPWDALDPNLKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +  GD V   +L  D +  K+ 
Sbjct: 305 VVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFMHVGDEVEAVILTLDREERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 365 LGIKQLKEDPWETI 378



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           ++       + S  +++ A +   +  +    +++  G V+ +      V+     DG++
Sbjct: 16  EEFENGSNTNVSKEDLQKAYDETLNKVNE---HQVVDGTVISIDKKEVIVNIGYKSDGVI 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V + +  D +G++ LS K
Sbjct: 73  PASEFRY----NPD--LKVGDVVEVYVENQEDKKGQLVLSHK 108


>gi|281425226|ref|ZP_06256139.1| ribosomal protein S1 [Prevotella oris F0302]
 gi|281400692|gb|EFB31523.1| ribosomal protein S1 [Prevotella oris F0302]
          Length = 593

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQK--KEIISH 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVALDQKINVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD D+ +I L +K +  +  
Sbjct: 269 FDEDKKRIALGLKQLTPHPW 288



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+    
Sbjct: 373 DPWEAIESKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +LD D +  ++ L  K ++ N  
Sbjct: 433 GAEIDVVVLDIDKENRRLSLGHKQLEDNPW 462



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  +VL  +   +  +      + +    +  +I +    
Sbjct: 191 HKALIEAELEAQKKEIISHLEKGQVLEGTVKNITSY-----GVFVDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            +++   +V    KG+
Sbjct: 246 -WGRVSDPHEVVALDQKINVVILDFDEDKKRIALGLKQLTPHPWDALSPDLKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +  GD V   +L  D D  K+ 
Sbjct: 305 VVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMHVGDEVEAVILTLDRDERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  + I
Sbjct: 365 LGIKQLKEDPWEAI 378



 Score = 38.7 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+      A+ S  ++E A +   +       +++ +G V+ +      V+     DG++
Sbjct: 16  DEFENGSSANVSKQDLEKAYDETLNKIQE---HQVVEGTVISLDKKEVVVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V + +  D +G++ LS +
Sbjct: 73  PASEFRY----NPD--LKVGDKVEVYVENQEDKKGQLVLSHR 108


>gi|196250541|ref|ZP_03149231.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
 gi|196209890|gb|EDY04659.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
          Length = 239

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 13/165 (7%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ-TGA 583
              R   +  + + L  +   +G    R  + A+  +     +G+G   +R I++     
Sbjct: 81  HPERYVEVKRLLQTLGFTTDAIGSNELRQALQALDIEATAAELGIGELTLRDIIDALCRP 140

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + +  D+    +    + ++E  +  +             +G V  V+DFGAFV     +
Sbjct: 141 ERDPRDELPKPLLRKDVLKMEDLKPGME-----------LEGTVRNVVDFGAFVDIGVKQ 189

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           DGLVHIS+LS + V    D+V  GD V V +   D  +G+I LSM
Sbjct: 190 DGLVHISKLSKQYVRHPLDIVSVGDVVKVWVEHVDVAKGRISLSM 234


>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 268

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 6/161 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL---GTREDEQYVDSL 366
            K+R+DGR    +R   AQ+     + GSS    G+T  +  V     G R D       
Sbjct: 12  TKLRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATG--GS 69

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA-IHPVLPQTAQFPYTLRI 425
           +G+      +  N    A  +  R    S R+        RA     L        T+ I
Sbjct: 70  AGSSGAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISI 129

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
              +  SDGS   A V   +LAL+DAG+P+   + G   G+
Sbjct: 130 HVSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTAGM 170



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 28/195 (14%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD--------GQDFFPLTVNYQERTYAVGKIPGGYL 78
           S G+     G T ++ +V      +         G     + V+     +A         
Sbjct: 37  SSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSSGAVVEVDVNVAGFA----GVDRK 92

Query: 79  RRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASA 136
           RR          ++  +  + +          +   + ++V+  D   S    ++ A + 
Sbjct: 93  RRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIHVSVLSSDG--SLLAAAVNACTL 150

Query: 137 ALMLSGLPFEGPVVGAQVDYINGQYVL-NPRLDE----------DQGSLDLFVSGTQDAV 185
           AL+ +G+P  G + G             +P  D+          ++  L     GT  ++
Sbjct: 151 ALVDAGIPMPGLLCGCTAGMSGSASTPRDPHNDQLDPLLDLSLPEEQELPFLTVGTTSSI 210

Query: 186 LMVELEANQLSEDVV 200
            + E   +   E+ +
Sbjct: 211 PVGENAMD-TDEEDM 224


>gi|262381422|ref|ZP_06074560.1| RNA-binding protein [Bacteroides sp. 2_1_33B]
 gi|262296599|gb|EEY84529.1| RNA-binding protein [Bacteroides sp. 2_1_33B]
          Length = 708

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++               A + +    +  +  ++  G V  + +FG FV      +
Sbjct: 602 LDIMEELDKPGRDPRQTIQVFAFDPMVKTIEDLKEGQVLPGIVTNITNFGCFVDVGIKEN 661

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVHIS+L+   V+  + VV     V VK+L  D  R +++LSMK +
Sbjct: 662 GLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI 708


>gi|330752238|emb|CBL87195.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
 gi|330752261|emb|CBL87217.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
          Length = 740

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I +     GK +   V     K+N      V    + +    A  E    I   
Sbjct: 188 QIDIKPIIDYDAYVGKTMEFKV----VKINEAIKNAVVSHKALIESDLA--EQRELIIGG 241

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R+   S+V++    + V +LD
Sbjct: 242 LEKGQVLEGTVKNLTDFGAFMDL-GGVDGLLYITDISWGRINHPSEVLELNQNLNVVVLD 300

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+ + +I L +K +  +  +
Sbjct: 301 FDENKKRISLGLKQLQPHPWE 321



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            + ++  +KV   D    K++ S     E   +    I+++      + G+V  +  +G 
Sbjct: 376 TLQQEFESKVVTIDRDDRKMSLSVKQLSE---DPWDKISEMFPNGSKHSGEVKNLTPYGV 432

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV       G+VHIS LS  +R +  S+  K G+T+ V +L+ D D  K+ L  K +++N
Sbjct: 433 FVELKEGIGGMVHISDLSWTKRYSHPSEFTKVGETIDVTILEVDQDSRKLSLGHKQLEEN 492

Query: 694 TG 695
             
Sbjct: 493 PW 494



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
                +     +  + KG++V + D+GAF+      +GL+H+S++S   +     +    
Sbjct: 318 HPWEVLPADVNIGSVVKGKIVNIEDYGAFLEIIPGVEGLIHVSEVSWSNQPVNAREFFTL 377

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
                 K++  D D  K+ LS+K + ++    I
Sbjct: 378 QQEFESKVVTIDRDDRKMSLSVKQLSEDPWDKI 410



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G     S S  EIE               N+I  G+V  + D    +      DGLV +S
Sbjct: 48  GNKHTLSYSEQEIEDYLNQYEQSLSTIGQNEIVLGKVTAIHDGDVVLDVNYKSDGLVSLS 107

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           +          D +K GD V V + D +D RG++ LS K
Sbjct: 108 EFR-----DMPD-LKIGDEVQVYVEDKEDLRGQLVLSRK 140


>gi|219685299|ref|ZP_03540118.1| ribosomal protein S1 [Borrelia garinii Far04]
 gi|219673072|gb|EED30092.1| ribosomal protein S1 [Borrelia garinii Far04]
          Length = 518

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 17/141 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE--MIRSITDVP 617
            + I + + +G K+   I+              +   +  +     A +     S+    
Sbjct: 223 VENIEDFVRVGDKLKLKII-------------KINPQTGKMELSLKALKANPWDSVDIKY 269

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQMVEVKILE 329

Query: 677 FDDRG-KIKLSMKVVDQNTGK 696
            D    KI L +K +++N  +
Sbjct: 330 VDKENQKISLGIKQINENPWE 350



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + DG   I      E E        +        +  G V ++ ++GA V       G++
Sbjct: 154 ESDGLRLILDRRTLERERDLAKRIELVSSYNEEDVVDGVVDRITEYGAIVKIKNFVTGIL 213

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           H   ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 214 HKRNIAFNQVENIEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + K+ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGKVIQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + +KL +K ++++  + 
Sbjct: 408 LVNGKVLEVDRRKRNVKLGIKQLEESPWED 437


>gi|254443813|ref|ZP_05057289.1| S1 RNA binding domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198258121|gb|EDY82429.1| S1 RNA binding domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 779

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E+   +E + S+ D+ E  K+  G V  V  FGAF+     +DGL HISQLS   V   +
Sbjct: 625 ELIQFKEGVNSMADLTEGMKL-TGVVTNVTAFGAFIDIGVHQDGLAHISQLSDSFVKDPN 683

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           +VVK G  V   + + D  R +I LS+K V +
Sbjct: 684 EVVKVGQKVSATVTEVDVARKRIGLSLKSVVE 715


>gi|219684810|ref|ZP_03539752.1| ribosomal protein S1 [Borrelia garinii PBr]
 gi|219671755|gb|EED28810.1| ribosomal protein S1 [Borrelia garinii PBr]
          Length = 551

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 17/141 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE--MIRSITDVP 617
            + I + + +G K+   I+              +   +  +     A +     S+    
Sbjct: 223 VENIEDFVRVGDKLKLKII-------------KINPQTGKMELSLKALKANPWDSVDIKY 269

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLD 676
           +++ I KG+VVK++ FGA +       G +HIS  S  RV     +++K G  V VK+L+
Sbjct: 270 KIDSIVKGKVVKILPFGAVIELDSELSGFLHISNFSWIRVIKSPQELIKLGQMVEVKILE 329

Query: 677 FDDRG-KIKLSMKVVDQNTGK 696
            D    KI L +K +++N  +
Sbjct: 330 VDKENQKISLGIKQINENPWE 350



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + DG   I      E E        +        +  G V ++ ++GA V       G++
Sbjct: 154 ESDGLRLILDRRTLEREREIAKRIELVSSYNEEDVVDGVVDRITEYGAIVKIKNFVTGIL 213

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           H   ++  +V    D V+ GD + +K++  + + GK++LS+K +  N    +
Sbjct: 214 HKRNIAFNQVENIEDFVRVGDKLKLKIIKINPQTGKMELSLKALKANPWDSV 265



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               +T+   + K+ +G V  +   GAFV+     D  V    +S        +  K GD
Sbjct: 348 PWERLTEKYPIGKVIQGVVTNITKTGAFVNIEEGIDAYVSKFDISWLEEIDPEEYFKIGD 407

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            V  K+L+ D R + ++L +K ++++  + 
Sbjct: 408 LVNGKVLEVDRRKRNVRLGIKQLEESPWED 437


>gi|327405306|ref|YP_004346144.1| 30S ribosomal protein S1P [Fluviicola taffensis DSM 16823]
 gi|327320814|gb|AEA45306.1| SSU ribosomal protein S1P [Fluviicola taffensis DSM 16823]
          Length = 602

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
           +   +I     V   +K +V    +FG FV      DGL+HIS LS + ++   S+  K 
Sbjct: 373 DPWSAIEAKYAVATKHKAKVRNFTNFGVFVELEEGVDGLIHISDLSWQKKIKHPSEFCKV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +L+ D +  +I L  K +++N  
Sbjct: 433 GDEMEVVVLEIDRENRRISLGHKQLEENPW 462



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 2/137 (1%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P    +V  +    I          V I+ +    + S          E  + I    E 
Sbjct: 153 PGSQIDVKPIRDYDIYVGKNMEFKVVKINQEFRNVVVSHKALIEAELEEQKKQIISGLEK 212

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            ++ +G V  +  +G F+   G  DGL+HI+ LS  RV    ++V+    + V +LDF D
Sbjct: 213 GQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVNHPEEIVELDQKLNVVILDFDD 271

Query: 679 DRGKIKLSMKVVDQNTG 695
           D+ +I L +K +  +  
Sbjct: 272 DKKRIALGLKQLQPHPW 288



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 95/257 (36%), Gaps = 26/257 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHL----------GHMDFKVA-GTDSGITAMQMDMKIG 510
           +  G VK      ++ D+ G E  L             D  V    +  +  +  + +  
Sbjct: 128 VITGFVKCRTKGGLIVDVFGIEAFLPGSQIDVKPIRDYDIYVGKNMEFKVVKINQEFRNV 187

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
            +S   ++ A  + ++ ++    E  +VL  +   +  +      + I    +  +I + 
Sbjct: 188 VVSHKALIEAELEEQKKQIISGLEKGQVLEGTVKNITSYG-----VFIDLGGVDGLIHIT 242

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIY 623
                G V      V +D    V I      +   A            ++     V    
Sbjct: 243 DLS-WGRVNHPEEIVELDQKLNVVILDFDDDKKRIALGLKQLQPHPWDALDTNLAVGDKV 301

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            G+VV + D+GAFV      +GL+H+S++S  + +    D ++ GDTV   +L  D +  
Sbjct: 302 SGKVVVLADYGAFVEIAAGVEGLIHVSEMSWSQHLRSAQDFMQVGDTVEAVILTLDREER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K +  +    I
Sbjct: 362 KMSLGIKQLMPDPWSAI 378


>gi|149198742|ref|ZP_01875785.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
 gi|149138178|gb|EDM26588.1| 30S ribosomal protein S1 [Lentisphaera araneosa HTCC2155]
          Length = 463

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
            G   +      +     IDD G V      L +I A ++  +   ++ E ++I +G + 
Sbjct: 148 PGDASLYLGQTFSFLITKIDDRGAVVSRRDYL-KILAEKQREKLQEELVEGDEI-EGVIR 205

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           ++  FG FV   G  DGLV  S++S +R    ++ V  GD V  K+L  D ++G+I LS+
Sbjct: 206 RIERFGFFVDL-GGVDGLVPASEVSWKRNVDLNEFVSVGDQVSCKILALDWEKGRITLSL 264

Query: 688 KVVDQNTG 695
           +   Q+  
Sbjct: 265 RACLQDPW 272



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            ++ +V  V DFGAFV      DGL+HISQ    +        + G+T+ VK+   D D+
Sbjct: 282 TFEAKVSSVQDFGAFVELIEGVDGLLHISQFKGIQP-------QIGETLKVKIDSVDFDQ 334

Query: 681 GKIKLSM 687
            +I LS+
Sbjct: 335 HRISLSL 341



 Score = 44.5 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 14/115 (12%)

Query: 576 GIVEQTGAKVNIDD-DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
            I E    K++  D D      S    E+  A E++ +        K   G V  +  +G
Sbjct: 318 QIGETLKVKIDSVDFDQHRISLSLHKGEVGEAVEIVEA--------KELTGTVENIKPYG 369

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVK----EGDTVWVKLLDFDDRGKIKL 685
            F+     R GL+H+SQL   +    +  ++    +G    +++L   + GKI L
Sbjct: 370 VFMGLSDGRSGLLHVSQLDVPKSGDATKTLEKNYAKGSEHKIEILKV-EAGKISL 423



 Score = 41.4 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E  RS+    +  +  KG++  +     FV F    +G++ + ++      K    +K G
Sbjct: 20  ENSRSMKIEFKSGEAVKGKITLIDKSSIFVDFGARCEGIIPLGEVLD---NKGELELKVG 76

Query: 668 DTVWVKLLDFDDRGKIKLSMK 688
           D +   +L+ D  G+I L++K
Sbjct: 77  DEIEAWVLN-DRGGEISLTVK 96


>gi|299140633|ref|ZP_07033771.1| S1 RNA binding domain protein [Prevotella oris C735]
 gi|298577599|gb|EFI49467.1| S1 RNA binding domain protein [Prevotella oris C735]
          Length = 707

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQ++ + +   ++VVK    V V++++ D  R +I
Sbjct: 639 GIVTNITNFGAFVDIGVHQDGLVHISQMADKFIKDPNEVVKLHQHVRVRVIEVDLRRKRI 698

Query: 684 KLSMK 688
            LSM+
Sbjct: 699 ALSMR 703


>gi|73669079|ref|YP_305094.1| translation initiation factor IF-2 subunit alpha [Methanosarcina
           barkeri str. Fusaro]
 gi|72396241|gb|AAZ70514.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanosarcina barkeri str. Fusaro]
          Length = 268

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV +     V  V DFGA+V     G R+G +HIS++    V    D V+EG  +  K+
Sbjct: 7   PEVGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVREGQKIVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           L+ D  RG I LS+K V+++  +
Sbjct: 67  LNVDPSRGHIDLSLKDVNEHQRR 89


>gi|294102497|ref|YP_003554355.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293617477|gb|ADE57631.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 139

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E  RS      V    + +V ++M +GAFV     +  ++HIS+LS   V K  DV++ G
Sbjct: 3   EDKRSDQAPVSVGDTVECEVEQIMPYGAFVRLSTGQRAMIHISELSYSYVKKVEDVLEVG 62

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNT 694
             V  K++  D++ +I LS+K +++  
Sbjct: 63  KKVTAKVIKIDEKNRIDLSLKKMEERP 89


>gi|330752193|emb|CBL87151.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium]
          Length = 740

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I +     GK +   V     K+N      V    + +    A  E    I   
Sbjct: 188 QIDIKPIIDYDAYVGKTMEFKV----VKINEAIKNAVVSHKALIESDLA--EQRELIIGG 241

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  + DFGAF+   G  DGL++I+ +S  R+   S+V++    + V +LD
Sbjct: 242 LEKGQVLEGTVKNLTDFGAFMDL-GGVDGLLYITDISWGRINHPSEVLELNQNLNVVVLD 300

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+ + +I L +K +  +  +
Sbjct: 301 FDENKKRISLGLKQLQPHPWE 321



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            + ++  +KV   D    K++ S     E   +    I+++      + G+V  +  +G 
Sbjct: 376 TLQQEFESKVVTIDRDDRKMSLSVKQLSE---DPWDKISEMFPNGSKHSGEVKNLTPYGV 432

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV       G+VHIS LS  +R +  S+  K G+T+ V +L+ D D  K+ L  K +++N
Sbjct: 433 FVELKEGIGGMVHISDLSWTKRYSHPSEFTKVGETIDVTILEVDQDSRKLSLGHKQLEEN 492

Query: 694 TG 695
             
Sbjct: 493 PW 494



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
                +     +  + KG++V + D+GAF+      +GL+H+S++S   +     +    
Sbjct: 318 HPWEVLPADVNIGSVVKGKIVNIEDYGAFLEIIPGVEGLIHVSEVSWSNQPVNAREFFTL 377

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
                 K++  D D  K+ LS+K + ++    I
Sbjct: 378 QQEFESKVVTIDRDDRKMSLSVKQLSEDPWDKI 410



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G     S S  EIE               N+I  G+V  + D    +      DGLV +S
Sbjct: 48  GNKHTLSYSEQEIEDYLNQYEQSLSTIGQNEIVLGKVTAIHDGDVVLDVNYKSDGLVSLS 107

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           +          D +K GD V V + D +D RG++ LS K
Sbjct: 108 EFR-----DMPD-LKIGDEVQVYVEDKEDLRGQLVLSRK 140


>gi|332706127|ref|ZP_08426198.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
 gi|332355105|gb|EGJ34574.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
          Length = 392

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D DRG+I LS K ++   G
Sbjct: 243 NDELKVMIIDLDADRGRISLSTKQLEPEPG 272



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVPGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVDNPDEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|282878652|ref|ZP_06287421.1| 30S ribosomal protein S1 [Prevotella buccalis ATCC 35310]
 gi|281299197|gb|EFA91597.1| 30S ribosomal protein S1 [Prevotella buccalis ATCC 35310]
          Length = 591

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQK--KEIISK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV   + + V +LD
Sbjct: 210 LEKGQILEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVSLDEKINVVILD 268

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 269 FDDEKKRIALGLKQLTPHPW 288



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  ++L  +   +  +      + +    +  ++ +    
Sbjct: 191 HKALIEAELEAQKKEIISKLEKGQILEGTVKNITSYG-----VFVDLGGVDGLVHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V++D+   V I      +   A            ++ +  +V    KG+
Sbjct: 246 -WGRVSDPHEVVSLDEKINVVILDFDDEKKRIALGLKQLTPHPWDALDENLKVGDKVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    D +  GD V   +L  D +  K+ 
Sbjct: 305 VVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDREDRKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 365 LGIKQLKADPWEDI 378



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+    
Sbjct: 373 DPWEDIEVKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTTV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 433 GAAIDVVVLEIDKENRRLSLGHKQLEENPW 462


>gi|220909392|ref|YP_002484703.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7425]
 gi|219866003|gb|ACL46342.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
          Length = 321

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNKLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEAG 272



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + I ++S  R+    +V++  +T    +L D ++
Sbjct: 33  DVVPGTVFSIEPKGALIDIGAKTAAFIPIQEMSINRIDSPEEVLRSNETREFFILADENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|282880197|ref|ZP_06288916.1| 30S ribosomal protein S1 [Prevotella timonensis CRIS 5C-B1]
 gi|281305917|gb|EFA97958.1| 30S ribosomal protein S1 [Prevotella timonensis CRIS 5C-B1]
          Length = 591

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  + I   
Sbjct: 156 QIDVHPIRDYDIFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQK--KEIISK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGLVHI+ LS  RV+   +VV   + + V +LD
Sbjct: 210 LEKGQILEGTVKNITSYGVFVDL-GGVDGLVHITDLSWGRVSDPHEVVSLDEKIHVVILD 268

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 269 FDDEKKRIALGLKQLTPHPW 288



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE     ++ +D        S   +   A       T  P  +K +  +V    +FG FV
Sbjct: 349 VEAVILTLDRED-----RKMSLGIKQLKADPWEDIETKYPVGSK-HTAKVRNFTNFGIFV 402

Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                 DGL+HIS LS  ++V   S+    G  + V +L+ D +  ++ L  K +++N  
Sbjct: 403 ELEEGVDGLIHISDLSWTKKVKHPSEFTTVGSDIEVVVLEIDKENRRLSLGHKQLEENPW 462



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDIFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    E  ++L  +   +  +      + +    +  ++ +    
Sbjct: 191 HKALIEAELEAQKKEIISKLEKGQILEGTVKNITSY-----GVFVDLGGVDGLVHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V++D+   V I      +   A            ++    +V    KG+
Sbjct: 246 -WGRVSDPHEVVSLDEKIHVVILDFDDEKKRIALGLKQLTPHPWDALDPNLKVGDKVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    D +  GD V   +L  D +  K+ 
Sbjct: 305 VVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDREDRKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 365 LGIKQLKADPWEDI 378



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M     +    +++ +G V+ +      V+     DG++  S+            +K G
Sbjct: 33  KMYDETLNKVSEHQVTEGTVISIDKKEVIVNIGYKSDGIIPASEFRY----NPD--LKIG 86

Query: 668 DTVWVKLLDF-DDRGKIKLSMK 688
           D V V + +  D +G++ LS K
Sbjct: 87  DKVEVYVENQEDRKGQLVLSHK 108



 Score = 38.4 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +   +     I+KG++ ++MD GA +      +G      L  E  ++     K+G+
Sbjct: 461 PWDTYETLYTPGSIHKGKITEMMDKGAVITLNEGGEGFATPKHLVKEDGSQA----KQGE 516

Query: 669 TVWVKLLD-FDDRGKIKLSMKVVDQNTGKPI 698
            +  K+++   D  +I LS     ++  + +
Sbjct: 517 ELDFKVIEFVKDTKRIILSHSRTFEDEKEEV 547


>gi|255034878|ref|YP_003085499.1| RNA binding S1 domain-containing protein [Dyadobacter fermentans
           DSM 18053]
 gi|254947634|gb|ACT92334.1| RNA binding S1 domain protein [Dyadobacter fermentans DSM 18053]
          Length = 705

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V  +  FGAFV     +DGLVH+SQ++ + V   ++VVK    V VK+ + 
Sbjct: 633 KVGMVLPGIVTNITAFGAFVDVGVKQDGLVHVSQMAEKFVKDPNEVVKLQQHVTVKVTEV 692

Query: 678 D-DRGKIKLSMK 688
           D  R +I LSMK
Sbjct: 693 DLARKRIALSMK 704


>gi|126727656|ref|ZP_01743488.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2150]
 gi|126703072|gb|EBA02173.1| ribosomal protein S1 [Rhodobacterales bacterium HTCC2150]
          Length = 552

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGKLAEGDAV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   ++++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 221 DMAWRRVNHPNEILNIGETVKVQVIKINKETHRISLGMKQLQDDPW 266



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    + +   +  +++G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWSIVEERFPLESVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDTVKRRVSLGLKQTQRNPWE 354



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV- 664
            R       +   V K  +G+V  + +FG F+      DG+VH+S L+ E   +  DV+ 
Sbjct: 349 QRNPWEVFAENNPVGKQVEGEVKNITEFGLFIGLDNDIDGMVHLSDLTWE--GRGEDVIG 406

Query: 665 --KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             ++GD V   + + D ++ +I LS+K +D
Sbjct: 407 DYRKGDMVQAVVTEVDVEKERISLSVKALD 436



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V  + + G  V + GA+   +  S L+ +R  +  +    GD V V++ +
Sbjct: 446 VKRGSIITVEVTSIEEGGVEVVYEGAK-SFIRRSDLARDRGDQRPERFNVGDKVDVRVTN 504

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 505 VDAKTRRLGLSIKAREIAEEKEAV 528


>gi|332703310|ref|ZP_08423398.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332553459|gb|EGJ50503.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 710

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  V  FGAF+     +DGL H+SQ++   V   ++VV+ G  V  ++L+ 
Sbjct: 637 EPGMVLPGVVTNVTRFGAFIDVGVHQDGLAHVSQIADRYVKDPAEVVRVGQKVTARVLEV 696

Query: 678 D-DRGKIKLSMK 688
           D +R +I LS+K
Sbjct: 697 DKERKRISLSLK 708


>gi|332187529|ref|ZP_08389266.1| ribosomal protein S1 [Sphingomonas sp. S17]
 gi|332012458|gb|EGI54526.1| ribosomal protein S1 [Sphingomonas sp. S17]
          Length = 569

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  +I  G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAVLEETRAEQRSGLIQSLAEG-QIIDGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            LS +RV   S+++  GDTV V+++  + D  +I L MK ++ +  
Sbjct: 229 DLSYKRVNHPSEMIAIGDTVRVQIIRINKDTQRISLGMKQLESDPW 274



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSD 662
           +A      +      +    +G+V    +FG F+      DG+VH+S ++         +
Sbjct: 355 QAQANPWEAFAAAHPIGSTVEGEVKNATEFGLFIGLDNDVDGMVHMSDIAWGVSGEDALN 414

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + ++G+ V   +LD D ++ +I L MK ++
Sbjct: 415 LHRKGEVVQAVVLDIDPEKERISLGMKQLE 444



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG-DTVWVKLLDFDDRGK 682
           G+V  + ++GAFV      +GLVH+S++S  ++      +V    +   V L    ++ +
Sbjct: 289 GRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVVVLEVDQEKRR 348

Query: 683 IKLSMKVVDQNTGK 696
           I L +K    N  +
Sbjct: 349 ISLGLKQAQANPWE 362



 Score = 37.2 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           N++    V++V D G  V        G +  + L  +R  +  +  + G      +  FD
Sbjct: 463 NQVVTVTVLEVRDAGLEVQAGDDGATGFIKRTDLGRDRDEQRPERFQVGQKFDAMVTGFD 522

Query: 679 DRGKIKLSMKVVD 691
              K   S+K + 
Sbjct: 523 RSKKPTFSVKAMQ 535


>gi|229143040|ref|ZP_04271477.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST24]
 gi|228640429|gb|EEK96822.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus cereus BDRD-ST24]
          Length = 722

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 359 DEQYVDSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRLA--RRAIHPVL 413
           +E  VD L    R+ F +  N       +  +++R   P+ +      ++  RR   P+ 
Sbjct: 392 EEFIVDVLQSVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLA 451

Query: 414 PQTAQFPYTLRI------VSE---------ITESDGSSSMATVCGSSLALMDAGVPISKP 458
                 P ++ +      VS+         + E+  +     V  +S+AL+     +SK 
Sbjct: 452 ELVKIDPKSVGVGQYQHDVSQKRLNESLTFVVETAVNQVGVNVNTASVALLQYVSGLSKT 511

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           VA   +   ++   F   +++                 +  I  +++      +    + 
Sbjct: 512 VAKNIVAKREEDGKFTKRTELKKI------PRLGAKTYEQCIGFLRILEGANPLDRTGIH 565

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +     L  L      + + +LQ      R+E + I   ++    G+G   +  I+
Sbjct: 566 PEQYKNVELLLKSLGLSIDDVGQPQLQK-----RLEEVEI--SKLSQETGVGEPTLVDII 618

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +     ++ + D   ++    L +     E ++   ++       +G V  V+DFGAFV 
Sbjct: 619 DAL---ISPERDMRDELPKPLLKKGILKLEDLKRGMEL-------EGTVRNVVDFGAFVD 668

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               +DGLVHIS+LS + V    DVV  G  V V + D D  +G++ LS+
Sbjct: 669 VGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSI 718


>gi|152992146|ref|YP_001357867.1| 30S ribosomal protein S1 [Sulfurovum sp. NBC37-1]
 gi|151424007|dbj|BAF71510.1| 30S ribosomal protein S1 [Sulfurovum sp. NBC37-1]
          Length = 552

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   +V   D    ++  S  + +      + + T    V  + KG V  + DFGAFV 
Sbjct: 330 EEINVEVIEVDKEGRRLRVSLKSLLPK---PMDAFTQQYRVGDVVKGTVTSITDFGAFVK 386

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G+ +GL+H  ++S ++       +  GD V VK++  D D GKI LS K ++ + 
Sbjct: 387 V-GSVEGLLHNQEISWDKSKNAKSELAVGDEVEVKIIKIDKDAGKISLSKKALEDSP 442



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G+V ++   L E + A+     + ++ E  +   G + K+  +G FV   G  DGLVH
Sbjct: 166 DKGSVVVSRKELIERDKAK-TDEIVGELLENKEPVVGTIKKITSYGMFVDVGGM-DGLVH 223

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            SQ+S +     S   +EGD V V  LD+D + + + LS+K  + +    I
Sbjct: 224 YSQISHKGPVNPSKYFQEGDEVNVIALDYDKKKRHLSLSIKDANPDPWADI 274



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D   K    SL+  +A  +    I  +  V       V  +  +G FV      +  +H+
Sbjct: 251 DYDKKKRHLSLSIKDANPDPWADIDSIIGVGDTVTATVSNIEPYGVFVDLGEDLEAFLHV 310

Query: 650 SQLSTER-VAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           S++S ++ V    D +  G+ + V++++ D  G ++++S+K +    
Sbjct: 311 SEISWDKNVKHPKDYLTNGEEINVEVIEVDKEGRRLRVSLKSLLPKP 357



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE    K++  D G + ++  +L +       I++     +   I  G V    DFG F+
Sbjct: 417 VEVKIIKID-KDAGKISLSKKALED-----SPIKAFAQTHKNGAIVTGTVKDKKDFGVFI 470

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
                 D L+    L   +     D +++G  +   +   D+   +I++S+K +++   +
Sbjct: 471 ALEDNVDALIRTEDLHPLKF----DEIEKGQEIKGVISFIDENNDRIRVSVKRLERQEER 526

Query: 697 P 697
            
Sbjct: 527 E 527


>gi|78187586|ref|YP_375629.1| 30S ribosomal protein S1 [Chlorobium luteolum DSM 273]
 gi|78167488|gb|ABB24586.1| SSU ribosomal protein S1P [Chlorobium luteolum DSM 273]
          Length = 589

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV+    + V ++ F
Sbjct: 214 KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVVVGF 272

Query: 678 DDR-GKIKLSMKVVDQNTGKPI 698
           D+   ++ L MK ++ +  + I
Sbjct: 273 DENTKRVSLGMKQLEAHPWENI 294



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +I     V    +G+VV + D+GAFV      +GLVHIS++S  + +      V  
Sbjct: 289 HPWENIELKYPVGSKAQGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTL 348

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V   +L+ D D  K+ LSMK V+++  
Sbjct: 349 GQEVECVILNIDKDHTKLSLSMKRVNEDPW 378



 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G+ +    E     +NID D T    S      +    +    T+      ++ G 
Sbjct: 339 IKHPGQFVTLGQEVECVILNIDKDHTKLSLSMKRVNEDPWIALSEKYTE----GSLHNGT 394

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIK 684
           V  + DFG FV      DGLVHIS LS  +++   S++VK+   + VK+L FD    +I 
Sbjct: 395 VSNITDFGVFVELEAGVDGLVHISDLSWTKKIRHPSELVKKNQELNVKVLKFDVHARRIA 454

Query: 685 LSMKVVDQNTG 695
           L  K ++ +  
Sbjct: 455 LGHKQINPDPW 465



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           GQV ++++ G  V   G  DG V ++ L    V       K GD + +++++FD +  +I
Sbjct: 480 GQVSQIIEKGVIVILPGDVDGFVPVTHLLQGGVKDIHTSFKAGDELPLRVIEFDKENKRI 539

Query: 684 KLS 686
            LS
Sbjct: 540 ILS 542


>gi|281420270|ref|ZP_06251269.1| ribosomal protein S1 [Prevotella copri DSM 18205]
 gi|281405765|gb|EFB36445.1| ribosomal protein S1 [Prevotella copri DSM 18205]
          Length = 594

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V      V I+ +    + S      +   +  + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV------VKINQEFRNVVVSHKALIEQELEQQRKEIIGK 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 210 LEKGQILEGTVKNITTYGVFVDL-GGVDGLIHITDLSWGRVSDPHEVVSLDQKINVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 269 FDEEKKRIALGLKQLTPHPW 288



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G V      V++D    V I      +   A            ++ +  +V    KG+V
Sbjct: 246 WGRVSDPHEVVSLDQKINVVILDFDEEKKRIALGLKQLTPHPWDALDENLKVGDHVKGKV 305

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V + D+GAFV      +GL+H+S++S  + +    D +K GD V   +L  D    K+ L
Sbjct: 306 VVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDRAERKMSL 365

Query: 686 SMKVVDQNTGKPI 698
            +K + ++  + I
Sbjct: 366 GIKQLKEDPWEAI 378



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+    
Sbjct: 373 DPWEAIETKFPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTSV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G ++ V +L+ D +  ++ L  K +++N    
Sbjct: 433 GASIDVVVLEIDKENRRLSLGHKQLEKNPWDE 464



 Score = 39.1 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+      A+ S  ++E A +   +       +++ +G V+ V      V+     DG++
Sbjct: 16  DEFENGTSANVSKTDLEKAYDETLNKVTE---HQVVEGTVISVDKKEVIVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             S+            +K GD V V + + +D +G++ LS K
Sbjct: 73  PASEFRY----NPD--LKVGDKVEVYVENQEDVKGQLVLSHK 108



 Score = 39.1 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +        +     +++G + ++MD GA V      +G      L+ E       + K+
Sbjct: 459 KNPWDEYEAIYTPGSVHQGTITELMDKGAVVVLAEGGEGFATPKHLTKED----GTMAKK 514

Query: 667 GDTVWVKLLD-FDDRGKIKLSMKVVDQNTGKPIV 699
           G+T+  K+++   +  +I LS     +   +P+ 
Sbjct: 515 GETLDFKVIEFVKETKRIILSHSRTFEEGNEPVA 548


>gi|260881013|ref|ZP_05403387.2| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
 gi|260850179|gb|EEX70186.1| 30S ribosomal protein S1 [Mitsuokella multacida DSM 20544]
          Length = 349

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 13/181 (7%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-IGMGGKVIR 575
           M    +  +  + HI   +   L  S   L  F P  ++       ++++ I +G  V  
Sbjct: 97  MEKKKEAGETVQAHITQVVKGGLVASVEGLRGFIPASQM---ELHFVKDLSIYVGQTVEA 153

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I+E     +++     V    S L    A +E     T   E  +  +G V +++D+GA
Sbjct: 154 EIIE-----IDVHKQRLVLSRRSLLEAERAKKEEEVFST--LEAGQTVRGTVKRLVDYGA 206

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           F+   G  DGL HIS L+  RV   SDV++ G  + V +   D +  +I LS+K   ++ 
Sbjct: 207 FIDI-GGVDGLAHISDLAWHRVKHPSDVLEVGQELDVYVKSVDPENKRISLSVKDTMRDP 265

Query: 695 G 695
            
Sbjct: 266 W 266



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+      +     +I +G+V+K+ DFGAF+      DGL+ + +L+ +R+ +  + V  
Sbjct: 263 RDPWYDSAEKYSEGQIIEGKVIKLTDFGAFMEIEPGFDGLIPMGELADKRIERADEAVHV 322

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+L  D  R +I LS+
Sbjct: 323 GDIVRVKILRIDTKRKRISLSI 344



 Score = 41.8 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               KG+V++V    A+V     ++  +   +L+        DVVK GD + V ++ 
Sbjct: 18  RTTVKGKVIQVNRDEAYVDIGYKQEIAIPKRELAYPAPESAEDVVKVGDVIDVYVVS 74


>gi|91787671|ref|YP_548623.1| 30S ribosomal protein S1 [Polaromonas sp. JS666]
 gi|91696896|gb|ABE43725.1| SSU ribosomal protein S1P [Polaromonas sp. JS666]
          Length = 561

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLSPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   + KG V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L F
Sbjct: 191 EGTAV-KGIVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTAGQEIVAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +           G++  + D+GAFV      +GLVH+S++    +    S +V  
Sbjct: 265 DPWMGVNRRYPQGTRLFGKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVAL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCKANPWQE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAQDTKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     + +    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDSDP 440



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  V   GA +       G +  S++S +RV    +V+KEGD V   +++ D + 
Sbjct: 453 IVTGKVKTVDAKGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVSAVVVNVDRKT 512

Query: 682 K-IKLSMKVVD 691
           + I+LS+K  D
Sbjct: 513 RNIQLSVKAKD 523


>gi|257438775|ref|ZP_05614530.1| general stress protein 13 [Faecalibacterium prausnitzii A2-165]
 gi|257198779|gb|EEU97063.1| general stress protein 13 [Faecalibacterium prausnitzii A2-165]
          Length = 108

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 46/79 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G+V  V  FGAFV     + G+VHIS++S E V   + V+ +GD V V++++ 
Sbjct: 4   EVGNVLEGRVTGVKPFGAFVALPEGKSGMVHISEVSNEYVQDINTVLHDGDAVKVQVINI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
              GKI LS+K +     +
Sbjct: 64  APDGKIALSIKRLLSPAPR 82


>gi|255262103|ref|ZP_05341445.1| ribosomal protein S1 [Thalassiobium sp. R2A62]
 gi|255104438|gb|EET47112.1| ribosomal protein S1 [Thalassiobium sp. R2A62]
          Length = 553

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I ++ E  ++  G V  + ++GAFV   G  DGL+H++
Sbjct: 163 GNIVVSRRAILEESRAEQRAEVIGNLTEGQQV-DGVVKNITEYGAFVDL-GGVDGLLHVT 220

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S++V  G+T+ V+++  + +  +I L MK +  +  
Sbjct: 221 DMAWRRVNHPSEIVTIGETIQVQVIKINKETHRISLGMKQLQADPW 266



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     +   + G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 264 DPWDAVAAQYALETTHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 323

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 324 SQEVEVMVLEIDSAKRRVSLGLKQTQRNPWE 354



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 95/251 (37%), Gaps = 28/251 (11%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++     S I  +   +++  I    +     
Sbjct: 196 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEIVTIGETIQVQVIK---INKETH 252

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   +  +    ++         T RV  +      +   +  G + +  + E + 
Sbjct: 253 RISLGMKQLQADPWDAVAAQYALETTHTGRVTNITDYGAFVE--LEPGVEGLVHVSEMSW 310

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      +                  R       +        +G+V
Sbjct: 311 TKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLKQTQRNPWEVFAETHPEGTEVEGEV 370

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKI 683
             + +FG FV   G  DG+VH+S L+ E   +  DV+   ++GD V  K+ + D ++ +I
Sbjct: 371 KNITEFGLFVGLDGDIDGMVHLSDLTWE--GRGEDVIGDYRKGDMVNAKVTEVDVEKERI 428

Query: 684 KLSMKVVDQNT 694
            LS+K +D + 
Sbjct: 429 SLSIKAMDGDP 439



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V  + D G  V + G +   +  S LS +R  +  +    GD + V++ +
Sbjct: 447 VKRGTIITVEVTSIEDGGVEVEYEGMK-SFIRRSDLSRDRAEQRPERFGVGDKIDVRVTN 505

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 506 IDSKTRRLGLSIKAREIAEEKEAV 529


>gi|322420780|ref|YP_004200003.1| 30S ribosomal protein S1 [Geobacter sp. M18]
 gi|320127167|gb|ADW14727.1| ribosomal protein S1 [Geobacter sp. M18]
          Length = 584

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKG 625
           +  GG + R + +    ++   +     +  S    +E  R+  R+ T    +   I  G
Sbjct: 163 LRPGGNMDRFVGQTYQFRILKLNRKRGNLVLSRRVLLEEERDKARTETLATLKEGDIVSG 222

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  + ++GAFV   G  DGL+H++ +S  R+   S++VK GDT+ V +L +D ++GKI 
Sbjct: 223 VVKNIAEYGAFVDL-GGVDGLLHVTDMSWGRLGHPSEMVKVGDTLNVIVLKYDREKGKIS 281

Query: 685 LSMKVVDQNTG 695
           L +K    +  
Sbjct: 282 LGLKQTVPDPW 292



 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +++D  +  +   G+VV + D+GAF+      +GLVH+S++S   RV   S+++K 
Sbjct: 290 DPWLNVSDRYKEGERVSGKVVSLTDYGAFISLEDGIEGLVHVSEMSWTRRVRHPSEILKV 349

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G+ V   +L  D    +I L +K  + N  
Sbjct: 350 GEEVEAVILGVDPANRRISLGLKQTEVNPW 379



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    I    +     KG+V  V DFG FV      +GL+H+S++S E+VA   D    G
Sbjct: 464 DPWDEIPRKYKPGSKVKGRVTSVTDFGIFVEIEEGIEGLIHVSEISYEKVASPKDFANVG 523

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
           D +   +L+ D    KI LS+K + 
Sbjct: 524 DELEAVVLNVDMVEKKIALSIKALQ 548



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P   KI +GQ+  + DFG F+      DGLVH+S +S   RV    ++  +G TV   +L
Sbjct: 387 PVGTKI-EGQIKNITDFGVFIGIEDGIDGLVHVSDISWTRRVKHPGELFTKGQTVQAVVL 445

Query: 676 DFD-DRGKIKLSMKVVDQNTGKPI 698
           + D +  ++ L +K +  +    I
Sbjct: 446 NIDVENERLSLGIKQLVADPWDEI 469


>gi|162452566|ref|YP_001614933.1| hypothetical protein sce4290 [Sorangium cellulosum 'So ce 56']
 gi|161163148|emb|CAN94453.1| hypothetical protein sce4290 [Sorangium cellulosum 'So ce 56']
          Length = 788

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E    R+ +R++ D+    ++ +G V  V  FGAFV     +DGLVH+SQL+   V   +
Sbjct: 642 EPPKFRDDVRTMEDLKPGMEL-EGVVTNVTAFGAFVDIGVHQDGLVHVSQLADRFVKDPN 700

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +V K G+ + V++L+ D  R +I L+ K
Sbjct: 701 EVAKVGEKIKVRVLEIDLVRKRISLTAK 728


>gi|27468082|ref|NP_764719.1| 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
 gi|27315627|gb|AAO04761.1|AE016747_258 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
          Length = 166

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G 
Sbjct: 42  PFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQ 101

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 102 QVNVKILGIDEDNERISLSIKA 123


>gi|300726999|ref|ZP_07060419.1| S1 RNA binding domain protein [Prevotella bryantii B14]
 gi|299775722|gb|EFI72312.1| S1 RNA binding domain protein [Prevotella bryantii B14]
          Length = 703

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVHISQL+ + ++  ++VVK    V VK+L+ D  R +I
Sbjct: 637 GIVTNITNFGAFVDVGVHQDGLVHISQLADKYISDPAEVVKLHQHVRVKVLEVDLRRHRI 696

Query: 684 KLSMKVV 690
            L+MK +
Sbjct: 697 SLTMKGL 703


>gi|313889985|ref|ZP_07823622.1| Tex-like protein N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121643|gb|EFR44745.1| Tex-like protein N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 713

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I    +   +G+G + +  I+        ++ DD    +    + +++            
Sbjct: 586 IDMKTMSQDLGIGLETLTDIINDLLKPGRDLRDDFQTPVLRQDVLDLK-----------D 634

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             + +  +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD V V +  
Sbjct: 635 LIIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSQTFVNHPSQVLSVGDVVTVWVSK 694

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D DR K+ LS+   +++
Sbjct: 695 IDLDRHKVNLSLIAPNES 712


>gi|32265636|ref|NP_859668.1| 30S ribosomal protein S1 [Helicobacter hepaticus ATCC 51449]
 gi|32261684|gb|AAP76734.1| ribosomal protein S1 [Helicobacter hepaticus ATCC 51449]
          Length = 552

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 7/182 (3%)

Query: 521 LQQAKRGRLHILNEMSKVLSESR---LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI 577
            ++       I +     + E++      G F    + + +   +  + I    K I  I
Sbjct: 101 SKRIVEKIAQIADNYQDKIIEAKVIKKNKGGFILEYDGIDVFMPRRDSAIREDDKAIGKI 160

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            +     +N + +  +          +  R+ +     + E + + KG V K+  FG FV
Sbjct: 161 YKVAIVNINKESNSIIVSRKRFFEIDDKNRQNV--SAKLLENDGVQKGIVKKIAPFGVFV 218

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
              G  +GLVH ++LS +     +   KEGD V VK+L +D++  ++ LSMK +  +  K
Sbjct: 219 DVYG-VEGLVHYTELSHKGPINPAKNFKEGDEVVVKVLGYDEKKRRLSLSMKALGDDPWK 277

Query: 697 PI 698
            I
Sbjct: 278 EI 279



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +    E     + ID D      S          +         +V +I KG++  + DF
Sbjct: 331 LNVGQEIDVEIIEIDTDNKRLRVSLKKLLD----KPFVYFAKTHQVGEIIKGKIATLTDF 386

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAFV+  G  DGL+H      ++ +K  D  K GD + VK++  D +  ++ LS K+++ 
Sbjct: 387 GAFVNL-GGVDGLLHNEDAYWDKKSKCKDGFKVGDEIEVKIIKIDKEHERVSLSKKLLEH 445

Query: 693 NTGKP 697
           +  + 
Sbjct: 446 SPARE 450



 Score = 44.9 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 10/116 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID +      S  L E   ARE  ++     +V+ + +G ++ + DFG F+      +
Sbjct: 427 IKIDKEHERVSLSKKLLEHSPAREFGKT----HKVDDVARGSIIDIKDFGIFIKIDEM-E 481

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            L+    +   +  K  D +K G+ +   +   D +  K++ S+K +++   K  +
Sbjct: 482 ALIRNEDI---QPLKKED-LKAGEEIECVITHIDEENNKVRASIKRLERQKEKETL 533


>gi|306827781|ref|ZP_07461052.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
 gi|304430005|gb|EFM33043.1| YhgF like protein [Streptococcus pyogenes ATCC 10782]
          Length = 710

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 582 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 630

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 631 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 690

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 691 KIDLDRHKVNLSL 703


>gi|167751224|ref|ZP_02423351.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702]
 gi|167655731|gb|EDR99860.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702]
          Length = 658

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                        +    +V +  FGAF       DGL+HISQ+STER+   + V+  GD
Sbjct: 560 PWNKFVAEYSEGDVVDVTIVSITPFGAFAQIIPGVDGLIHISQISTERINNVAQVLSIGD 619

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            V  K+++ + ++ ++ LS++ +
Sbjct: 620 EVKAKIIEINEEQNRVSLSIRAL 642



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + + +     + S   A+ EA         +  EV + + G+V  +  +G FV   G  D
Sbjct: 451 IEVTEARGRVVGSIRQAKKEANDAAKAKFWENIEVGQKFTGEVKSIESYGVFVDL-GGVD 509

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+VH S+L+  R+    ++VK GD + V +  FD ++ ++ L  K  + N  
Sbjct: 510 GMVHSSELTWNRIKHPREIVKIGDKLDVYVKSFDPEKKRVSLGCKKEEDNPW 561



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 1/135 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    +  ++ + G  +      +     I +   +     +  E       +       
Sbjct: 250 IDKAAVSELLPLQGGTVGITAGASTPAYIIKEVHRIMSEILNNEEGFDFMAEVDKTFKKV 309

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +    K  VV V    A V       G +  S+LS +  A  SDVVK GD +   +   
Sbjct: 310 YIGNRVKALVVAVNKNEAVVDLGTKHSGYIPASELSQDPNAAPSDVVKVGDEIEAIVTAV 369

Query: 678 DD-RGKIKLSMKVVD 691
           +D  G + LS K VD
Sbjct: 370 NDAEGTVTLSKKKVD 384


>gi|219848105|ref|YP_002462538.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542364|gb|ACL24102.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 500

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
                S         +E+ R      +V +I +G +     FGAF      +DGL+HIS+
Sbjct: 181 RRSRQSQPAQPQPRRQEVDREKLASLKVGEIVEGVITGFAPFGAFADIGVGKDGLIHISE 240

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVD 691
           LS  RV K  D VK G+    K+L+ D  G +I LS++   
Sbjct: 241 LSEGRVEKPEDAVKVGERYQFKVLEIDGEGTRISLSLRRAQ 281



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G+V  +  +G FV     RDGLVHIS++S  R+   S++V+ GDTV V +   D D  
Sbjct: 106 LEGKVTSIALYGIFVDVGVGRDGLVHISEMSDRRIDTPSELVQIGDTVKVWVKSVDLDAR 165

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 166 RISLTM 171



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 567 IGMGGKVIRGI-------VEQTGAKVNIDDDGTVKIASSSLA----EIEAAREMIRSITD 615
           IG+G   +  I       VE+    V + +    K+           +   R        
Sbjct: 228 IGVGKDGLIHISELSEGRVEKPEDAVKVGERYQFKVLEIDGEGTRISLSLRRAQRTQRMQ 287

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E  +I +G V  +  FGAFV     RDGLVHIS L+  RVAK  DVVK GD V VK+L
Sbjct: 288 QLEPGQIIEGTVSGIATFGAFVDIGVGRDGLVHISALAPHRVAKVEDVVKVGDKVKVKVL 347

Query: 676 DFDDR-GKIKLSMKVVDQNTG 695
             D +  +I L+M++ ++   
Sbjct: 348 GVDPQSKRISLTMRLEEEQPA 368


>gi|311746070|ref|ZP_07719855.1| ribosomal protein S1 [Algoriphagus sp. PR1]
 gi|126576287|gb|EAZ80565.1| ribosomal protein S1 [Algoriphagus sp. PR1]
          Length = 590

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N  +D  V      + +     +    I +  E  ++ +G +  + +FG F+ 
Sbjct: 172 EVKVVKINHANDNVVVSHKVLIEKDLE--KQKAEILNNLEKGQVLEGVIKNMTNFGVFID 229

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S  R+    +V++    V + +LDF DD+ +I L MK +  +    
Sbjct: 230 L-GGVDGLLHITDISWGRINHPEEVLQLDQKVQIVVLDFDDDKKRISLGMKQLTAHPWDS 288

Query: 698 IV 699
           + 
Sbjct: 289 LA 290



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ DDD                     S+    EV    +G++V V D+GAF+      +
Sbjct: 265 LDFDDDKKRISLGMKQLTAH----PWDSLASNLEVGSKVRGKIVNVADYGAFLELAPGVE 320

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+H+S++S  + +   +D VK GD +   +L  D D  K+ L +K + ++  
Sbjct: 321 GLIHVSEMSWSQHLRNPADFVKVGDEIDAVVLTLDKDERKMSLGIKQLTEDPW 373



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           + G V  + +FG F+      DGLVH+S LS  +++   S+ VK GD + V +L+ D D 
Sbjct: 388 HTGVVRNLTNFGLFLELEEGIDGLVHVSDLSWTKKIKHPSEFVKVGDELEVAVLELDVDN 447

Query: 681 GKIKLSMKVVDQNTG 695
            ++ L  K +++N  
Sbjct: 448 RRLALGHKQLEENPW 462



 Score = 38.0 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +V  V  I+K  VV   D GA +      +G   I  L  E  ++       GD
Sbjct: 461 PWDTFENVFPVGSIHKCTVVSKNDKGAVLELPYGLEGFATIKNLDKEDGSQVEA----GD 516

Query: 669 TVWVKLLDF-DDRGKIKLS 686
           +V  ++ +F  D  +I LS
Sbjct: 517 SVDFRVTEFSKDDKRIVLS 535


>gi|209559042|ref|YP_002285514.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131]
 gi|209540243|gb|ACI60819.1| hypothetical protein Spy49_0490 [Streptococcus pyogenes NZ131]
          Length = 710

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 582 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 630

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 631 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 690

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 691 KIDLDRHKVNLSL 703


>gi|158337672|ref|YP_001518848.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
 gi|158307913|gb|ABW29530.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
          Length = 325

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 243 NDDLKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 37.6 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + I ++S  R+    +V++  +T    +L D ++
Sbjct: 33  DVVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRIENPDEVLQSNETREFFILADENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
          Length = 329

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 14/199 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R D R S  +R I ++  LL +  GS+ F +G +  +  V  G  +    V +    + 
Sbjct: 84  KRDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAV-YGPID----VKTARKEKI 138

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
           +  ++  +F P               +     L R A+  ++         + ++ ++  
Sbjct: 139 SKSVVDVSFTPATGNTTYF-------DKEREMLVRNAVESIILTLLHPRTQINVIVQVYS 191

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +DGS     +    LAL+DAG+ ++  ++ I +    D   +  L     +E++   +  
Sbjct: 192 NDGSIISCAINACCLALLDAGIELNCLISSITLSFTHDNQIY--LDPTQKEENNSKGLAV 249

Query: 492 KVAGTDSGITAMQMDMKIG 510
               + S I   +    IG
Sbjct: 250 YAINSKSEIVMTKTTGIIG 268



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG+   + G++ VLA V     +K  +         +E+  +   +   +       T 
Sbjct: 107 ADGSAKFSQGKSSVLAAVYGPIDVKTAR---------KEKI-SKSVVDVSFTPATGNTTY 156

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
            +     ++  ++  +        TQ+ + V  +  + S    ++ A   AL+ +G+   
Sbjct: 157 FDKEREMLVRNAVESIILTLLHPRTQINVIVQVYSNDGSIISCAINACCLALLDAGIELN 216

Query: 147 GPVVGAQVDY-INGQYVLNPRLDEDQGSLDL-FVSGTQDAVLMVELEANQLSEDVVLDAI 204
             +    + +  + Q  L+P   E+  S  L   +    + +++      + E +    +
Sbjct: 217 CLISSITLSFTHDNQIYLDPTQKEENNSKGLAVYAINSKSEIVMTKTTGIIGESLYFQGL 276

Query: 205 IFGHNECKPV 214
                 C+ V
Sbjct: 277 NIAKQSCEKV 286


>gi|298376641|ref|ZP_06986596.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_19]
 gi|298266519|gb|EFI08177.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_19]
          Length = 708

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++               A +      +  +  ++  G V  + +FG FV      +
Sbjct: 602 LDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLPGIVTNITNFGCFVDVGIKEN 661

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVHIS+L+   V+  + VV     V VK+L  D  R +++LSMK +
Sbjct: 662 GLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI 708


>gi|114777721|ref|ZP_01452681.1| ribosomal protein S1 [Mariprofundus ferrooxydans PV-1]
 gi|114551937|gb|EAU54471.1| ribosomal protein S1 [Mariprofundus ferrooxydans PV-1]
          Length = 621

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 25/261 (9%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
            G  ++  V G+   +V           I   E     +     GT+     +Q      
Sbjct: 89  KGEMVTGMVVGLNADVVVIDVGTKAEGTIPLAEFEQAGLPVPAIGTEIK-ALIQSVGGSS 147

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ-----------LGEFTPRVEIMAIP 559
           G+S +++ +  ++A       + + S V +    +           L  F PR E     
Sbjct: 148 GVSLSVLAIRQREAWDAIEAAVADESTVDAVITSEVKGGYRVSLSGLNAFMPRSEADTDI 207

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE- 618
                N+IG   KV      +    +            S    + AA E+ R+       
Sbjct: 208 HVLPANLIGKACKVAVLEARRRPENI----------VVSRRRPLTAALEVERAAFFAQHA 257

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V     G+V ++ DFGAFV   G  D L+H+S +S  R+   S+++  G +V V+++  +
Sbjct: 258 VGDRLSGEVKRLADFGAFVDI-GGVDALLHVSDVSWRRIKHPSEMLSVGQSVSVEIVKLN 316

Query: 679 -DRGKIKLSMKVVDQNTGKPI 698
            + GK+ +SMK +  +    +
Sbjct: 317 AETGKVSVSMKALQSDPWDNV 337



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-DVVKEG 667
             +       +     G++  + DFG FVH     DGLVH+  LS E+    + +   +G
Sbjct: 420 PWQQWMADHPIGTHVSGKIKNITDFGFFVHVADGMDGLVHMENLSWEKSGAAAMEPYSKG 479

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V   +L  D ++ +I L +K +  + 
Sbjct: 480 QEVEAVVLGVDVEKQRIALGIKQLSADP 507



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++  + E      G V +++DFGA V      +G++H S+LS   R    + V+ E
Sbjct: 332 DPWDNVEAIYEPGMGLTGTVRRLLDFGAVVELEPGIEGMIHRSELSWTNRDVNPAAVLAE 391

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           GD V V +L+ D    +I+LS+K V +N  +
Sbjct: 392 GDVVDVVVLEVDASARRIRLSLKAVSENPWQ 422



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
             G VV V   G  V         + + ++  +        +K G  V  K+++ +++ +
Sbjct: 521 VNGTVVDVKPAGVVVELADGVQAFMPMREVPRDHGE-----LKVGSEVEAKIVEVNNKRR 575

Query: 683 -IKLSMKV 689
            + LS++ 
Sbjct: 576 QVTLSIRQ 583


>gi|145220318|ref|YP_001131027.1| 30S ribosomal protein S1 [Prosthecochloris vibrioformis DSM 265]
 gi|145206482|gb|ABP37525.1| SSU ribosomal protein S1P [Chlorobium phaeovibrioides DSM 265]
          Length = 602

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-------KGQV 627
            G +      V++D    V +          +  M +      E  ++        +G+V
Sbjct: 261 WGRINHPSEVVDLDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENIELKYPVGSKAQGRV 320

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GLVHIS++S  + +      V  G  V   +L+ D D  K+ L
Sbjct: 321 VSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHTKLSL 380

Query: 686 SMKVVDQNTG 695
           SMK V+++  
Sbjct: 381 SMKRVNEDPW 390



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G+ +    E     +NID D T    S      +    +     +    N  +KG 
Sbjct: 351 IKHPGQFVTLGQEVECVILNIDKDHTKLSLSMKRVNEDPWIALSEKYVE----NTRHKGT 406

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIK 684
           V  + DFG FV      DGLVHIS LS  +++   S++VK+   + VK+L FD    +I 
Sbjct: 407 VSNITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFDVHARRIA 466

Query: 685 LSMKVVDQNTG 695
           L  K ++ +  
Sbjct: 467 LGHKQMNPDPW 477



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV     + V ++ F
Sbjct: 226 KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVGF 284

Query: 678 DDR-GKIKLSMKVVDQNTGKPI 698
           D+   ++ L MK ++ +  + I
Sbjct: 285 DENTKRVSLGMKQLEAHPWENI 306



 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            ++ ++++ G  V   G  DG V  + L    V       K GD + +++++FD +  +I
Sbjct: 492 AEISQIIEKGVIVILPGDVDGFVPATHLLQGGVKDIHSSFKIGDALPLRVIEFDKENKRI 551

Query: 684 KLS 686
            LS
Sbjct: 552 ILS 554


>gi|94988103|ref|YP_596204.1| transcription accessory protein [Streptococcus pyogenes MGAS9429]
 gi|94991990|ref|YP_600089.1| transcription accessory protein [Streptococcus pyogenes MGAS2096]
 gi|94541611|gb|ABF31660.1| transcription accessory protein (S1 RNA binding domain)
           [Streptococcus pyogenes MGAS9429]
 gi|94545498|gb|ABF35545.1| transcription accessory protein [Streptococcus pyogenes MGAS2096]
          Length = 717

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 589 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 637

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 638 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 697

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 698 KIDLDRHKVNLSL 710


>gi|15674668|ref|NP_268842.1| hypothetical protein SPy_0580 [Streptococcus pyogenes M1 GAS]
 gi|21909945|ref|NP_664213.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
 gi|28896358|ref|NP_802708.1| hypothetical protein SPs1446 [Streptococcus pyogenes SSI-1]
 gi|71903127|ref|YP_279931.1| transcription accessory protein [Streptococcus pyogenes MGAS6180]
 gi|71910293|ref|YP_281844.1| transcription accessory protein [Streptococcus pyogenes MGAS5005]
 gi|13621785|gb|AAK33563.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21904133|gb|AAM79016.1| putative transcriptional regulator [Streptococcus pyogenes MGAS315]
 gi|28811609|dbj|BAC64541.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71802222|gb|AAX71575.1| transcription accessory protein [Streptococcus pyogenes MGAS6180]
 gi|71853075|gb|AAZ51098.1| transcription accessory protein [Streptococcus pyogenes MGAS5005]
          Length = 710

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 582 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 630

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 631 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 690

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 691 KIDLDRHKVNLSL 703


>gi|121605690|ref|YP_983019.1| 30S ribosomal protein S1 [Polaromonas naphthalenivorans CJ2]
 gi|120594659|gb|ABM38098.1| SSU ribosomal protein S1P [Polaromonas naphthalenivorans CJ2]
          Length = 561

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLSPYENKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + + KG V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L F
Sbjct: 191 EGSAV-KGIVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTAGQEIVAKILKF 248

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D ++ ++ L +K +  +  
Sbjct: 249 DTEKNRVSLGLKQMGDDPW 267



 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +      +    G++  + D+GAFV      +GLVH+S++    +    S +V  
Sbjct: 265 DPWMGVNRRYPQSTRLFGKITNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPSKLVAL 324

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GD V V +L+ D D+ +I L MK    N  + 
Sbjct: 325 GDEVEVMVLEIDEDKRRISLGMKQCKANPWQE 356



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+D           +        +      +     KG +  + DFG FV      D
Sbjct: 333 LEIDEDKRRISLGMKQCKAN----PWQEFAVETKRGDRVKGPIKSITDFGVFVGLAAGID 388

Query: 645 GLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S LS     + +    K+G  V   +L  D DR +I L +K +D + 
Sbjct: 389 GLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDSDP 440



 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I  G+V  V   GA +       G +  S++S +RV    +V+KEGD V   +++ D + 
Sbjct: 453 IVTGKVKTVDAKGAEIDLGEDIIGYLRASEISRDRVEDARNVLKEGDEVSAVVVNVDRKT 512

Query: 682 K-IKLSMKVVD 691
           + I+LS+K  D
Sbjct: 513 RNIQLSVKAKD 523


>gi|325104633|ref|YP_004274287.1| SSU ribosomal protein S1P [Pedobacter saltans DSM 12145]
 gi|324973481|gb|ADY52465.1| SSU ribosomal protein S1P [Pedobacter saltans DSM 12145]
          Length = 637

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N +    V      + +   ++++   I    E  ++ +G V  + DFG F+ 
Sbjct: 216 EFKVVKINHEFKNVVVSHKVLIEDDLESQKV--EIVSKLEKGQVLEGTVKNITDFGVFID 273

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S  R+    +V+   + V V +LDFDD + +I L +K +  +  + 
Sbjct: 274 L-GGVDGLLHITDISWGRIEHPKEVLSLDEKVNVVVLDFDDEKKRIALGLKQLTAHPWES 332

Query: 698 I 698
           +
Sbjct: 333 L 333



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 20/249 (8%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
           G VK      ++ DI G E  L      +         +   M+   +   I        
Sbjct: 173 GFVKSRTKGGLIVDIMGVEAFLPGSQIDIKPIRDYDIYVGKTMEFKVV--KINHEFKNVV 230

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG--------KVIRG 576
              ++ I +++     E   +L +    +E            I +GG         +  G
Sbjct: 231 VSHKVLIEDDLESQKVEIVSKLEK-GQVLEGTVKNITDFGVFIDLGGVDGLLHITDISWG 289

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVK 629
            +E     +++D+   V +      +   A            S+     +    KG++V 
Sbjct: 290 RIEHPKEVLSLDEKVNVVVLDFDDEKKRIALGLKQLTAHPWESLDTELGIGSKVKGKIVT 349

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V D+GAF+      +GL+H+S++S  +      + +K GD +   +L  D +  K+ L +
Sbjct: 350 VADYGAFLEIIPGVEGLIHVSEMSWSQNLRNPQEFMKIGDEIEAVVLTLDREERKMSLGI 409

Query: 688 KVVDQNTGK 696
           K +  +  +
Sbjct: 410 KQLTPDPWE 418



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +      +   V   +K  V  + +FG FV      DGL+HIS LS  +++   ++  K 
Sbjct: 415 DPWEKAAERYPVGSKHKAVVKNMTNFGVFVEIEEGIDGLIHISDLSWSKKINHPNEFTKV 474

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+ + V +L+ D +  K+ L  K +++N  
Sbjct: 475 GEELDVIVLELDAENRKLSLGHKQLEENPW 504



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +   +  ++ +++G V KV D GA V      +G V    L+ E        +K  D
Sbjct: 503 PWDTFETIFTLDSVHEGTVTKVTDKGALVALPYGVEGFVPTKHLAKEDGTS----LKVDD 558

Query: 669 TVWVKLLDFD-DRGKIKLS 686
               ++++F+ D  +I +S
Sbjct: 559 VAEFRIIEFNKDSKRIVVS 577


>gi|312144298|ref|YP_003995744.1| Tex-like protein [Halanaerobium sp. 'sapolanicus']
 gi|311904949|gb|ADQ15390.1| Tex-like protein [Halanaerobium sp. 'sapolanicus']
          Length = 722

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 86/234 (36%), Gaps = 9/234 (3%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           +G+  +     +L+ +SG   +             G    +  + + G        A   
Sbjct: 487 VGVELNTASAALLTYVSGISSNNAQKIIDHRSEKGGFKTRKELLDVYGFGPKTYEQAAGF 546

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA--IPPDQIRNVIGMGGKVIRGIVEQT 581
            +         ++ +  ES  +      +++  +  I  DQ    I    K +  I    
Sbjct: 547 LRIDSDADPFALTPIHPESYKEAERILNKIDHQSSDIKDDQTLEKIREKIKTLNIIETAE 606

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAR------EMIRSITDVPEVNKIYKGQVVKVMDFGA 635
             ++ I     +  A         A              +  E   I+ G+V  ++DFGA
Sbjct: 607 TLEIGIPTTKDIIKAIQQPGRDPRASMPGPVFRKDILKIEDIEEGMIFTGKVRNIVDFGA 666

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           F+     +DGL+HIS++S   +    ++++ G  V VK+L+ D  R +I  ++K
Sbjct: 667 FIDIGLKQDGLLHISEMSDFYLNDPFEILQIGQNVDVKVLNVDKKRERISFTLK 720


>gi|229553841|ref|ZP_04442566.1| RNA binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|258507807|ref|YP_003170558.1| General stress protein 13 [Lactobacillus rhamnosus GG]
 gi|229312811|gb|EEN78784.1| RNA binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|257147734|emb|CAR86707.1| General stress protein 13 [Lactobacillus rhamnosus GG]
          Length = 127

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               +  I  G+V  V  +GAFV       GLVHIS+     V  TSD+   G  V V +
Sbjct: 1   MEYRIGDILTGKVTGVQPYGAFVMLDEHTQGLVHISECQHGYVKDTSDIFNVGQRVEVVI 60

Query: 675 LDFDD-RGKIKLSMKVVDQNT 694
           LD D+   KI LS++ +    
Sbjct: 61  LDIDEYTQKISLSLRALQAPP 81


>gi|189345892|ref|YP_001942421.1| 30S ribosomal protein S1 [Chlorobium limicola DSM 245]
 gi|189340039|gb|ACD89442.1| RNA binding S1 domain protein [Chlorobium limicola DSM 245]
          Length = 586

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G+ +    E     +NID + T    S          +   ++++    N ++KG 
Sbjct: 341 IKHPGQFVTLGQEVECVILNIDKEHTKLSLSMKRVN----EDPWIALSEKYIENSLHKGT 396

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           V  + DFG FV      DGLVHIS LS  +++   S++VK+   + VK+L FD +  +I 
Sbjct: 397 VSNITDFGVFVELEAGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFDVNARRIA 456

Query: 685 LSMKVVDQNTGKP 697
           L  K ++ +    
Sbjct: 457 LGHKQINPDPWDE 469



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V  + DFG FV   G  DGLVHI+ ++  R+   S+VV+    + V ++ F
Sbjct: 216 KVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRINHPSEVVELDQPIKVVVVGF 274

Query: 678 DDR-GKIKLSMKVVDQNTGKPI 698
           D+   ++ L MK ++ +  + I
Sbjct: 275 DENTKRVSLGMKQLESHPWENI 296



 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G+VV + D+GAFV      +GLVHIS++S  + +      V  G  V   +L+ D +  K
Sbjct: 308 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKEHTK 367

Query: 683 IKLSMKVVDQNTG 695
           + LSMK V+++  
Sbjct: 368 LSLSMKRVNEDPW 380



 Score = 43.7 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G + ++++ G  V   G  DG V +S L    V          + + +++++FD +  +I
Sbjct: 482 GNISQIIEKGVIVILPGDVDGFVPVSHLLQGGVKDIHSSFAVDNELPLRVIEFDKENKRI 541

Query: 684 KLS 686
            LS
Sbjct: 542 ILS 544



 Score = 38.7 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 592 TVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
            VK+ +   +   A  E + + T      ++I KG++V + +    +      +G+V + 
Sbjct: 19  KVKVFAHYDSAALAEMEKLYTSTLSEIREDEIVKGRIVSISNKDVTIDVGYKSEGIVSLL 78

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVD 691
           +   E        VK GD V V L +  D  G++ LS K  D
Sbjct: 79  EFRDEE----EGEVKVGDEVEVYLENIEDKMGQLILSKKKAD 116


>gi|299538307|ref|ZP_07051592.1| hypothetical protein BFZC1_19910 [Lysinibacillus fusiformis ZC1]
 gi|298726509|gb|EFI67099.1| hypothetical protein BFZC1_19910 [Lysinibacillus fusiformis ZC1]
          Length = 723

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           + +LG       I A+   ++ +V+G+G   I+ IV           D  +K +      
Sbjct: 579 KKELGTQKAEEAIAALNIQKLSDVLGVGVVTIQDIV-----------DTLMKPSRDPRDA 627

Query: 603 IEAAREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                 ++++     E  K+    +G V  V+DFGAFV     +DGLVHIS+L  +R+  
Sbjct: 628 FPQ--PLLKTDVLKMEDLKVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKH 685

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
             +VV  GD V V +   D  +G+I L+M
Sbjct: 686 PLEVVALGDIVTVWVEQIDITKGRISLTM 714


>gi|297617653|ref|YP_003702812.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145490|gb|ADI02247.1| hydroxymethylbutenyl pyrophosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 646

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G+  + S     IE      +   D  E  +I +G V ++ D+GAF+   G  +GL+HIS
Sbjct: 443 GSQVVVSRKEVLIEEKERKRKEFWDNIEEGQIRQGVVKRLTDYGAFIDLDGY-EGLLHIS 501

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +++  RV   S V+ EG  + V +L  D ++ ++ LS K + ++  + + 
Sbjct: 502 EMAHSRVEHPSQVLTEGSVIEVYVLGVDREKERVSLSRKKILKSPWETVA 551



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 52/103 (50%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D+      +   + +E   EM  S+    +   +  G V++V D    V   G  +G++ 
Sbjct: 266 DEIREDAPTREQSFVEMEAEMAESLGKGMDRGSVVTGVVIQVTDDEVMVDVGGKSEGVIP 325

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           + +LS   V+   +VVKEGDT+ V +L +DD G I LS K VD
Sbjct: 326 LRELSVRDVSSAKEVVKEGDTIEVYVLRWDDDGTILLSKKRVD 368



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +    ++ +      +  G+VV+   FG FV      DGLVHISQLS +RV K  DVV+ 
Sbjct: 544 KSPWETVAERYHEGDVVAGKVVRTAPFGVFVELEPGVDGLVHISQLSRKRVDKPEDVVEV 603

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G+ V VK+L  D    +I LS+K + +
Sbjct: 604 GEEVKVKVLSVDPAEKRIGLSIKELQE 630



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DDDGT+ ++   +  ++ A + +          ++ +G V+K +  G  V         +
Sbjct: 355 DDDGTILLSKKRVD-MKKAMDRLEEAFR---NGEVIEGTVLKSVKGGLLVDV--GVVAFL 408

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK----IKLSMKVV 690
             S +         + V  G T+ VK+++F+   +    + +S K V
Sbjct: 409 PASHVDQGFARNLEEYV--GQTLPVKVIEFNRNKRRGSQVVVSRKEV 453


>gi|301309904|ref|ZP_07215843.1| S1 RNA binding domain protein [Bacteroides sp. 20_3]
 gi|300831478|gb|EFK62109.1| S1 RNA binding domain protein [Bacteroides sp. 20_3]
          Length = 708

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++               A +      +  +  ++  G V  + +FG FV      +
Sbjct: 602 LDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLPGIVTNITNFGCFVDVGIKEN 661

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVHIS+L+   V+  + VV     V VK+L  D  R +++LSMK +
Sbjct: 662 GLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI 708


>gi|294615654|ref|ZP_06695509.1| protein tex [Enterococcus faecium E1636]
 gi|291591483|gb|EFF23137.1| protein tex [Enterococcus faecium E1636]
          Length = 726

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD V V +   D  +G
Sbjct: 655 LTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKG 714

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 715 RISLTM 720


>gi|256840817|ref|ZP_05546325.1| RNA-binding protein [Parabacteroides sp. D13]
 gi|256738089|gb|EEU51415.1| RNA-binding protein [Parabacteroides sp. D13]
          Length = 708

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++               A +      +  +  ++  G V  + +FG FV      +
Sbjct: 602 LDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLPGIVTNITNFGCFVDVGIKEN 661

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVHIS+L+   V+  + VV     V VK+L  D  R +++LSMK +
Sbjct: 662 GLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI 708


>gi|255013293|ref|ZP_05285419.1| RNA-binding protein [Bacteroides sp. 2_1_7]
          Length = 708

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++               A +      +  +  ++  G V  + +FG FV      +
Sbjct: 602 LDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLPGIVTNITNFGCFVDVGIKEN 661

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVHIS+L+   V+  + VV     V VK+L  D  R +++LSMK +
Sbjct: 662 GLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI 708


>gi|73662124|ref|YP_300905.1| RNA binding protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494639|dbj|BAE17960.1| putative RNA binding protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 716

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVH+S+L+ + V    D+V  GD V V +LD DD +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHVSKLAKKFVKNPMDIVSVGDIVDVWILDIDDKKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|317968718|ref|ZP_07970108.1| 30S ribosomal protein S1 [Synechococcus sp. CB0205]
          Length = 354

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S E +     V+  
Sbjct: 230 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHTVLNV 288

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 289 NDQMKVMIIDLDAERGRISLSTKALEPEPG 318



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   + KG V  +   G+ +         + + ++S  RV   SDV++ G+     +L +
Sbjct: 76  KPGDVVKGTVFAIEPKGSMIDIGAKTAAFMPMQEVSINRVEHISDVLEPGEEREFFILSE 135

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 136 ENEDGQLTLSIRRIEYQRAWE 156


>gi|304408482|ref|ZP_07390125.1| Tex-like protein [Paenibacillus curdlanolyticus YK9]
 gi|304342541|gb|EFM08392.1| Tex-like protein [Paenibacillus curdlanolyticus YK9]
          Length = 742

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D                A        +  +     +G V  V+DFGAFV      DG
Sbjct: 636 DIVDSLQRPGRDPREELPPPAFRTDVLQIEDLKPGMELQGTVRNVIDFGAFVDIGIKNDG 695

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LVHIS+LST+ V   +DVV  GD V V +L+ D  +G++ L+M
Sbjct: 696 LVHISRLSTKFVKHPTDVVSVGDAVTVWVLEADLKKGRVSLTM 738


>gi|56552694|ref|YP_163533.1| 30S ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762615|ref|ZP_04760688.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753664|ref|YP_003226557.1| 30S ribosomal protein S1 [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56544268|gb|AAV90422.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241372810|gb|EER62514.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258553027|gb|ACV75973.1| ribosomal protein S1 [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 568

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 171 GNIVVSRRAVLEETRAEQRSGLIQSLAEG-QVITGVVKNITDYGAFVDL-GGIDGLLHVT 228

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            LS  RV   S+++  GD+V V+++  + D  +I L MK ++ +  +
Sbjct: 229 DLSYRRVGHPSEMIAIGDSVTVQIIRINRDTQRISLGMKQLETDPWE 275



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     V   + G+V  + ++GAFV      +GLVH+S++S  ++      +V  
Sbjct: 272 DPWEGVGAKYPVGAKFMGRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVST 331

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +L+ D ++ +I L +K    N  +
Sbjct: 332 SQEVEVVILEVDAEKRRISLGLKQAQPNPWE 362



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSD 662
           +A      S  +   V    +G+V    +FG F+      DG+VH+S ++      +   
Sbjct: 355 QAQPNPWESFAEAHPVGSTVEGEVKNSTEFGLFIGLDNDVDGMVHMSDIAWGMSGEEALS 414

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +  +G+ V   +LD D ++ +I L MK ++
Sbjct: 415 LHHKGEVVKAVVLDVDPEKERISLGMKQLE 444



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           G +  S L  +R  +  D  + G  +   ++ FD + K   S+K +     K  V
Sbjct: 486 GFIRRSDLGRDRDEQRPDRFQAGQKLDAMVIGFDRQKKPNFSIKAMQVAEEKEAV 540


>gi|94993898|ref|YP_601996.1| transcription accessory protein [Streptococcus pyogenes MGAS10750]
 gi|94547406|gb|ABF37452.1| transcription accessory protein [Streptococcus pyogenes MGAS10750]
          Length = 717

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 589 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 637

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 638 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 697

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 698 KIDLDRHKVNLSL 710


>gi|94989984|ref|YP_598084.1| transcription accessory protein [Streptococcus pyogenes MGAS10270]
 gi|94543492|gb|ABF33540.1| transcription accessory protein [Streptococcus pyogenes MGAS10270]
          Length = 717

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 589 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 637

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 638 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 697

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 698 KIDLDRHKVNLSL 710


>gi|19745695|ref|NP_606831.1| hypothetical protein spyM18_0648 [Streptococcus pyogenes MGAS8232]
 gi|19747830|gb|AAL97330.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 710

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 582 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 630

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 631 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 690

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 691 KIDLDRHKVNLSL 703


>gi|293556206|ref|ZP_06674796.1| protein Tex [Enterococcus faecium E1039]
 gi|291601625|gb|EFF31887.1| protein Tex [Enterococcus faecium E1039]
          Length = 726

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD V V +   D  +G
Sbjct: 655 LTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKG 714

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 715 RISLTM 720


>gi|212640210|ref|YP_002316730.1| putative RNA binding protein (contains ribosomal protein S1 domain)
           [Anoxybacillus flavithermus WK1]
 gi|212561690|gb|ACJ34745.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Anoxybacillus flavithermus WK1]
          Length = 167

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I  G V  +  +G FV       GL+HIS+++   V    D V  G++V VK++  D++ 
Sbjct: 61  IVTGVVTGIQPYGIFVSLDEQTQGLIHISEITDGYVKNIYDYVDVGESVRVKIIAIDEKT 120

Query: 681 GKIKLSMKVVDQNT 694
            +I LS++ VD + 
Sbjct: 121 KRISLSLRDVDHDA 134


>gi|322411371|gb|EFY02279.1| transcription accessory protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 710

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           ++  + IP  Q+   +G+G + +  I+ +      ++ DD    I           R+ I
Sbjct: 579 KLAAVTIP--QMAETLGIGLETLNDIITDLLKPGRDLRDDFEAPIL----------RQDI 626

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
             + D+    K+ +G V  V+DFGAFV      DGLVHIS++S   V   S VV  GD V
Sbjct: 627 LDLKDLAIGQKL-EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLV 685

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V +   D DR K+ LS+
Sbjct: 686 TVWVSKIDLDRHKVNLSL 703


>gi|260424827|ref|ZP_05733404.2| hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1
           [Dialister invisus DSM 15470]
 gi|260403304|gb|EEW96851.1| hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1
           [Dialister invisus DSM 15470]
          Length = 658

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 13/189 (6%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             ++   A  + +      +  +   L      L  F P  +        +++++G    
Sbjct: 384 DWDVAKEAFDKGEPVECEGIEAIKVGLLVQLKSLRGFIPLSQGDLRFVHSLQSLVG---- 439

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVM 631
                 ++  AK+   D    ++  S  A +E  R     + +   E  ++ KG V K+M
Sbjct: 440 ------QKFKAKILEVDPTKNRLVLSRKAVLEEQRTGELDVIEQAYENGEVLKGTVKKIM 493

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            +GAFV      +GL+HIS +S  +++K  DV++    + VK+  FD ++ +I  S K  
Sbjct: 494 PYGAFVAL-NGIEGLLHISDVSWRKISKVEDVLQPEQVIDVKIKSFDREKQRISFSHKDC 552

Query: 691 DQNTGKPIV 699
             N  +  V
Sbjct: 553 LPNPWETAV 561



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +     EV+ I   +VVK+++FG  V       GL+HI++++ +   K  D+ + GD
Sbjct: 556 PWETAVKDHEVDDIVGARVVKILEFGVIVELEDGLTGLLHINEMTQDHNKKPGDICRVGD 615

Query: 669 TVWVKLLDFDD-RGKIKLSM 687
            + V+++  D+ R +I  S+
Sbjct: 616 DLTVRIIGIDEARKRISFSL 635



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           ++     + ++    E      DV + + + +G+VV + D  A++ F    + ++ + + 
Sbjct: 282 IEEVFFIMEDMNEMLEQEEMNLDVHKGS-VVEGKVVDLTDDKAWISFGYKTEAVLPLHEY 340

Query: 653 STERVAKTSDVVKEGDTVWVKLLD 676
           S    A   DV++ GD++ V+++ 
Sbjct: 341 SYPEPASLKDVLQVGDSLRVQVVS 364


>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
          Length = 227

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 21/228 (9%)

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD-SLSGTQRNDFMMHYNFLPCATG 386
           + G++ +  GS+   +G+T+ +  V  G RE ++  D SL+G         + F P +  
Sbjct: 2   KTGIISQAKGSAYIEQGNTKLVCGV-YGPREVQKKSDFSLNGQ----LFCEFKFAPFSCQ 56

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           +  R       E+    L R A+   +         + +   + E+DGS   A +  +SL
Sbjct: 57  KR-RGHQQDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASL 115

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED-------HLGHMDFKVAGTDSG 499
           AL  A +P+   + G ++  +      + L D + DE+          + +  V    S 
Sbjct: 116 ALASASIPMYDLMIGTSVRQIPK----LFLLDPTKDEEWQPELNHDENNSNLTVGFMPS- 170

Query: 500 ITAMQMDMKIGGISE-NIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            T         G+S+   +   L+ A    L +   +   L E+  ++
Sbjct: 171 -THQVSAYVHEGVSKTEDLEQMLKLATEYCLKVQPVVQLCLKETVEKI 217



 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 26/239 (10%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           L+TG I+ Q+ G+     G T ++  V   R ++   DF      + E  +A    P   
Sbjct: 1   LKTGIIS-QAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFA----PFSC 55

Query: 78  LRRESRPTENEIL-ISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAA 134
            +R     +NE L +S ++  ++       K  K   QV +NVM  + + SP   ++  A
Sbjct: 56  QKRRGHQQDNEELVLSGLLREALEAAVCLHKFPKA--QVEVNVMVIENDGSPLAAALTCA 113

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED--------QGSLDLFVS--GTQDA 184
           S AL  + +P    ++G  V  I   ++L+P  DE+        + + +L V    +   
Sbjct: 114 SLALASASIPMYDLMIGTSVRQIPKLFLLDPTKDEEWQPELNHDENNSNLTVGFMPSTHQ 173

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIV-IDSKDFSKLEE 242
           V     E    +ED +   +      C  V      + ++C KE +  I S +  K++E
Sbjct: 174 VSAYVHEGVSKTED-LEQMLKLATEYCLKV----QPVVQLCLKETVEKILSNEGEKVDE 227


>gi|288561435|ref|YP_003424921.1| RNA-binding S1 domain-containing protein [Methanobrevibacter
           ruminantium M1]
 gi|288544145|gb|ADC48029.1| RNA-binding S1 domain-containing protein [Methanobrevibacter
           ruminantium M1]
          Length = 728

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEV 619
           + +   +G+G   ++ I ++             K       E+         +T    E 
Sbjct: 608 EDMAQELGIGSITLKDIAKELK-----------KPGRDPRDEMPQPILRKDVLTMEDLEK 656

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
             +  G V  ++DFG FV     +DG+VH S++  ++ V    D V  GD + VK+LD D
Sbjct: 657 GMVLSGTVRNIVDFGIFVDIGVHQDGMVHKSEITDSQYVNHPMDFVSVGDIIDVKVLDVD 716

Query: 679 -DRGKIKLSM 687
             + +I+LSM
Sbjct: 717 IPKRRIQLSM 726


>gi|50913850|ref|YP_059822.1| transcription accessory protein [Streptococcus pyogenes MGAS10394]
 gi|50902924|gb|AAT86639.1| transcription accessory protein [Streptococcus pyogenes MGAS10394]
          Length = 710

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 582 AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 630

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 631 DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 690

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 691 KIDLDRHKVNLSL 703


>gi|315640555|ref|ZP_07895663.1| S1 RNA-binding domain protein [Enterococcus italicus DSM 15952]
 gi|315483759|gb|EFU74247.1| S1 RNA-binding domain protein [Enterococcus italicus DSM 15952]
          Length = 152

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV     G+V  + +FGAF+     + GLVHIS++S   V   ++V+K GD V V + + 
Sbjct: 4   EVGAKVPGKVSGITNFGAFIDLGAGKTGLVHISEVSNGFVKDINEVLKVGDEVTVLVTNI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
              GKI LS++  +    + 
Sbjct: 64  GADGKIGLSIRKAEDRPQEE 83


>gi|224368955|ref|YP_002603119.1| transcriptional accessory protein (S1 RNA binding domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691672|gb|ACN14955.1| transcriptional accessory protein (S1 RNA binding domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 703

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
               G V  V  FGAFV     +DGLVHISQL+   V   ++VVK    V V +L+ D +
Sbjct: 633 MRVPGLVTNVTAFGAFVDIGVHQDGLVHISQLADRFVKDPNEVVKVRQQVTVTVLEVDIN 692

Query: 680 RGKIKLSMK 688
           R +I LSM+
Sbjct: 693 RQRISLSMR 701


>gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
 gi|306532508|gb|ADN02042.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192]
          Length = 800

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 15/188 (7%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ-LGEFTPRVEIMAIPPDQIRNVIGMG 570
           +    +  A Q+ K     I+ E+              F PR +      +++ +V    
Sbjct: 329 LFWKTLKDAFQEKKPIEGKIVREIKGGFEVDLGHGFSGFLPRSQT---DIERVEDVSPYI 385

Query: 571 GKVIRGIVEQ--TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           G   R ++E+  +  KVNI       + S      E          +  +   I +G V 
Sbjct: 386 GLETRFLIERLFSNRKVNI-------VLSRRRWLEEERERKRTEFFETRKEGDIVEGVVK 438

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               FGAF+   G  DGL+H+  +S  R  +  D VK+G+ V VK++  D ++ K+ LS+
Sbjct: 439 SFAPFGAFIDLGGF-DGLLHLQDMSWGRAVRPKDYVKKGEKVRVKIIKMDREQQKVNLSL 497

Query: 688 KVVDQNTG 695
           K + ++  
Sbjct: 498 KALKEDPW 505



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   K+   D    K+  S  A  E   +      +      + +G V K+M FGAFV 
Sbjct: 477 EKVRVKIIKMDREQQKVNLSLKALKE---DPWTHFEERYHRGDVVEGVVTKLMPFGAFVE 533

Query: 639 FCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                +GLVHIS++S  + +    +V+K G  +  K+LD+D    ++ L ++ + +N  +
Sbjct: 534 IEEGIEGLVHISEMSWVKTIEHPKEVLKRGAKIQAKILDYDIQERRLSLGIRQLQENPWE 593

Query: 697 PI 698
            +
Sbjct: 594 TL 595



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ +   V       + +V   GA V      +  +    +S  ERV   + + + G
Sbjct: 591 PWETLHERYPVGMRLTRPITQVFPHGAVVELEEGIEAFLPAENISWTERVEDVTTLFQPG 650

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             +   +   D  R +I++ +K + ++  K + 
Sbjct: 651 QEIEFCITRIDKRRRRIQIGIKQLSEDPWKALA 683



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS---DVVKEGDTVWVK 673
           PE ++I + +V++    G  V   G  +G +   QL    V       D +KEGDT+   
Sbjct: 687 PEGSEI-ETKVLRKEPQGIVVEVQGGIEGFIPNRQLCDPAVESPETVRDRLKEGDTIRAL 745

Query: 674 LLDFDD-RGKIKLSM 687
           +L+    + ++ LS+
Sbjct: 746 VLELKPSKRRLILSI 760


>gi|315185614|gb|EFU19382.1| cytidylate kinase [Spirochaeta thermophila DSM 6578]
          Length = 800

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 15/188 (7%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ-LGEFTPRVEIMAIPPDQIRNVIGMG 570
           +    +  A Q+ K     I+ E+              F PR +      +++ +V    
Sbjct: 329 LFWKTLKDAFQEKKPIEGKIVREIKGGFEVDLGHGFSGFLPRSQT---DIERVEDVSPYI 385

Query: 571 GKVIRGIVEQ--TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           G   R ++E+  +  KVNI       + S      E          +  +   I +G V 
Sbjct: 386 GLETRFLIERLFSNRKVNI-------VLSRRRWLEEERERKRTEFFETRKEGDIVEGVVK 438

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
               FGAF+   G  DGL+H+  +S  R  +  D VK+G+ V VK++  D ++ K+ LS+
Sbjct: 439 SFAPFGAFIDLGGF-DGLLHLQDMSWGRAVRPKDYVKKGEKVRVKIIKMDREQQKVNLSL 497

Query: 688 KVVDQNTG 695
           K + ++  
Sbjct: 498 KALKEDPW 505



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   K+   D    K+  S  A  E   +      +      + +G V K+M FGAFV 
Sbjct: 477 EKVRVKIIKMDREQQKVNLSLKALKE---DPWTHFEERYHRGDVVEGVVTKLMPFGAFVE 533

Query: 639 FCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                +GLVHIS++S  + +    +V+K G  +  K+LD+D +  ++ L ++ +  N  +
Sbjct: 534 IEEGIEGLVHISEMSWVKTIEHPKEVLKRGARIQAKILDYDIEERRLSLGIRQLQANPWE 593

Query: 697 PI 698
            +
Sbjct: 594 TL 595



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              ++ +   V       + ++   GA V      +  +    +S  ERV   + + + G
Sbjct: 591 PWETLHERYPVGMRLTRPITQIFPHGAVVELEEGIEAFLPAENISWTERVEDVTTLFQPG 650

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             +   +   D  R +I++ +K + ++  K + 
Sbjct: 651 QEIEFCITRIDKKRRRIQIGIKQLSEDPWKALA 683



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV---VKEGDTVWVK 673
           PE ++I + ++++    G  V   G  +G +   QL    V    +V   +KEGDT+   
Sbjct: 687 PEGSEI-ETKILRKEPQGIVVEVQGGIEGFIPNRQLCDPAVETPENVRDRLKEGDTIRAL 745

Query: 674 LLDFDD-RGKIKLSM 687
           +L+    + ++ LS+
Sbjct: 746 VLELKPSKRRLILSI 760


>gi|237710734|ref|ZP_04541215.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727122|ref|ZP_04557603.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265750408|ref|ZP_06086471.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229433978|gb|EEO44055.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455456|gb|EEO61177.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237304|gb|EEZ22754.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 709

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 14/163 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +++K LS +  +L +       + I       V   G   +  I+++      +D  
Sbjct: 560 IVEQIAKDLSCTVDELIKSKELRSRIDIKKYVTPTV---GLPTLTDIIQE------LDKP 610

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G        + E +   + I  +T+  E+  I       + +FG FV       GLVH+S
Sbjct: 611 GRDPRQQIQVFEFDKNVKTIEDLTEGMELPGIVNN----ITNFGCFVDIGIKEKGLVHVS 666

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           QL+ + V+  + VV     V VK++  D +R +I+L+MK ++Q
Sbjct: 667 QLADKFVSDPTTVVSIHQHVRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|139474204|ref|YP_001128920.1| transcription accessory protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134272451|emb|CAM30708.1| putative transcription accessory protein [Streptococcus pyogenes
           str. Manfredo]
          Length = 710

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   
Sbjct: 633 EIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVSKI 692

Query: 678 D-DRGKIKLSM 687
           D DR K+ LS+
Sbjct: 693 DLDRHKVNLSL 703


>gi|225571633|ref|ZP_03780629.1| hypothetical protein CLOHYLEM_07731 [Clostridium hylemonae DSM
           15053]
 gi|225159710|gb|EEG72329.1| hypothetical protein CLOHYLEM_07731 [Clostridium hylemonae DSM
           15053]
          Length = 718

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 14/132 (10%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVN 620
           ++   +G+G   +R IV++             K       E+                  
Sbjct: 597 KLAGELGVGEITLRDIVKELE-----------KPGRDPRDEMPRPILRTDVLEMKDLTEG 645

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD- 678
            + KG V  V+DFG FV     +DGLVHIS++   + +    + V  GD V VK++  D 
Sbjct: 646 MVLKGTVRNVIDFGVFVDIGVHQDGLVHISEITDKKFIKHPLEAVSVGDIVDVKVMSVDL 705

Query: 679 DRGKIKLSMKVV 690
            + +I+L+MK +
Sbjct: 706 KKKRIQLTMKGI 717


>gi|157364502|ref|YP_001471269.1| RNA-binding S1 domain-containing protein [Thermotoga lettingae TMO]
 gi|157315106|gb|ABV34205.1| RNA binding S1 domain protein [Thermotoga lettingae TMO]
          Length = 539

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID +      S   A+     +    +        +  G++V+++  G  V       
Sbjct: 330 IEIDPEKHRIALSYKKAKG----DPWEEVVQKYNEGDVVSGKIVRILPAGVIVELEDGVS 385

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
           G V  S+LS  +V   +D+ KE D + VK+L  D +  +++LS+K +  +    +V
Sbjct: 386 GFVPKSELSWNKVKDPTDLFKEKDRLNVKILSIDKQKRRMRLSVKQLTPDPWDEVV 441



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 17/158 (10%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F PR E+   P     +++    ++   I+E             +  A SS+     
Sbjct: 211 IKAFLPRSEMSHDPSVSPDDILKKNDQIKVKIIE-------------INPARSSITVSLK 257

Query: 606 AREM--IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSD 662
           A E      +++   V  + +G V  +M FG F++     DGL+HIS++    + A    
Sbjct: 258 ALEPDPWLKVSERYSVGTVVQGTVKSIMPFGIFLNLEPGLDGLIHISEVFWTSKKADLHK 317

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             K G  V  ++++ D ++ +I LS K    +  + +V
Sbjct: 318 YFKIGQIVQAEVIEIDPEKHRIALSYKKAKGDPWEEVV 355



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            +   +  +V    +G V  +    A + F G +   +  S++S +      D++K+ D 
Sbjct: 179 KKEFFNTHKVGDEIEGTVESIRMNHAIIDFDGIK-AFLPRSEMSHDPSVSPDDILKKNDQ 237

Query: 670 VWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           + VK+++ +  R  I +S+K ++ +  
Sbjct: 238 IKVKIIEINPARSSITVSLKALEPDPW 264


>gi|40062482|gb|AAR37434.1| ribosomal protein S1 [uncultured marine bacterium 105]
          Length = 589

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 22/188 (11%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI--------------MAIPPDQIRNVIG 568
           + K  ++ I +E+ K  ++ ++ +G    R++                 I    +RN+  
Sbjct: 123 REKAEKMKIWDEIEKAYNDQKVVIGHVIERIKGGLAVDIGVRAFLPGSQIDVRPVRNLDS 182

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + G+ +R  V +   K      G + ++   L E E A +  ++++ + E  K+ KG V 
Sbjct: 183 LRGEELRMRVIKVNKKR-----GNIVLSRKVLLEEENADKKQKTLSTLAEG-KVIKGIVK 236

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + D+GAFV   G  DGL+HI+ +S  RV+  S++ K  D   V +L FD +  ++ L  
Sbjct: 237 NLTDYGAFVDLGGF-DGLLHITDMSWGRVSHPSELFKINDEAEVIVLKFDPETERVSLGY 295

Query: 688 KVVDQNTG 695
           K +  +  
Sbjct: 296 KQLIADPW 303



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 77/190 (40%), Gaps = 17/190 (8%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAKV 585
            R  +L E +    +  L        ++ +          + +GG   +  I + +  +V
Sbjct: 205 SRKVLLEEENADKKQKTLSTLAEGKVIKGIVKNLTDYGAFVDLGGFDGLLHITDMSWGRV 264

Query: 586 N-------IDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           +       I+D+  V +          +        +    + D   VN+   G++V + 
Sbjct: 265 SHPSELFKINDEAEVIVLKFDPETERVSLGYKQLIADPWDGVGDRYPVNERVNGRIVSLT 324

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
           D+GAFV      +GL+H+S++S  +RV   S ++  GDTV   +L  D    +I L +K 
Sbjct: 325 DYGAFVELEPGVEGLIHVSEMSWSKRVKHPSKILTVGDTVEALVLAVDPNARRISLGLKQ 384

Query: 690 VDQNTGKPIV 699
           ++ N    I 
Sbjct: 385 IEVNPWLQIA 394



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I D   +     G V  V +FGAFV      DGL+HIS +S  +R+   S+VV +G
Sbjct: 389 PWLQIADRYPLGTKITGTVRNVTEFGAFVEVEEGVDGLIHISDMSWSKRLQHPSEVVNKG 448

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
           D V   +L+ D +  ++ L +K +
Sbjct: 449 DEVESVVLNVDAENQRLSLGLKQL 472



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLD--- 676
            + +G++VK+ +FGAFV      +GL+HIS+   E+   K    ++      +K++    
Sbjct: 488 DVVEGKIVKLTNFGAFVELADGIEGLIHISEFDDEQGDEKIE--LEVDQAYSMKIIKLSA 545

Query: 677 FDDRGKIKLSMKVV 690
            D   KI LS++ +
Sbjct: 546 VDR--KIGLSIRAL 557


>gi|313632144|gb|EFR99228.1| general stress protein 13 [Listeria seeligeri FSL N1-067]
          Length = 117

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDDSTQGLVHISEITHGFVKDIHDFLEVGQVVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  +    +
Sbjct: 65  DEEKNKISLSIRATEDAPKE 84


>gi|31747721|gb|AAO38350.1| Lfe154p1 [Leptospirillum ferrooxidans]
          Length = 369

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQV 627
               + R I +    ++   +     I  S    +E  R+  + +T    +  ++ +G V
Sbjct: 1   PVRDMDRLIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEVLEGIV 60

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             + D+GAF+   G  DGL+HI+ +S  RV+   D++  GD + V +L  D D G++ L 
Sbjct: 61  KNITDYGAFIDL-GGIDGLLHITDMSWGRVSNPQDLMNVGDKLNVVVLKHDRDTGRVSLG 119

Query: 687 MKVVDQNTG 695
           +K +  +  
Sbjct: 120 LKQLSADPW 128



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              S+ +   V  +  G+V  + DFGAFV      DGL+HIS +S  + V   S++ K+G
Sbjct: 214 PWDSVEERYPVGTVVSGKVKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSELFKKG 273

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             V V +L  + +R ++ L  K + Q+  
Sbjct: 274 QKVDVAVLKIEKERQRLSLGFKQLSQDPW 302



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVV 664
           A       T  PE +K+   +VV + D+GAF+      +GL+H++++S    V   S ++
Sbjct: 125 ADPWTLVATRYPEFSKV-AAKVVSITDYGAFLEIEPGVEGLMHVTEMSWNHEVKHPSKIM 183

Query: 665 KEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
             GD V  ++L  D++ + I L +K +  N    +
Sbjct: 184 NVGDVVEARVLKIDEKNRKISLGLKQLGPNPWDSV 218



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 604 EAAREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                      ++PE   +     G + KVMDFG FV      +GLVH+S++  E   + 
Sbjct: 294 FKQLSQDPWDAEIPEKFAVGVSVDGVITKVMDFGFFVELAEGVEGLVHVSEVDIESGQRL 353

Query: 661 SDVVKEGDTVWVKLLD 676
               + G T+ V+++ 
Sbjct: 354 DQSYQVGSTISVRVIK 369


>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 256

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 83/217 (38%), Gaps = 19/217 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR +  +R +S   GLL R HGS+ + + +T  +  V  G +        +      
Sbjct: 19  RADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAV-YGPKPAA-----MKKENAE 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
             ++   +        ++ G     E     + RR++  ++         + ++ ++   
Sbjct: 73  RAIIEVVW-------RAKSGLSGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVIND 125

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           DGS     +  +  AL+DAG+P++  ++ ++ G+  DG    +  D +  E+        
Sbjct: 126 DGSLLACAMNAACAALVDAGIPLNGLLSAVSCGVTHDGQ---VFLDPTKPEEQKCKAYVS 182

Query: 493 VAGTD---SGITAMQMDMKIGGISENIMVMALQQAKR 526
                   S +  +  D+    +   I+    + A  
Sbjct: 183 FVFPSRRLSAVPELPADVDGEPVEYGILTSVTRGAME 219



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAV 70
           RPL L  G + R + G+   +   T VLA V   +     K+  +   + V ++ ++   
Sbjct: 29  RPLSLSRGLLTR-AHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIEVVWRAKSG-- 85

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
             + G Y +      + E+    ++ RS+  +        T + + +   + + S    +
Sbjct: 86  --LSGSYEK------DAEV----VVRRSLEYIILTALHPNTAISVILQVINDDGSLLACA 133

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQG 172
           M AA AAL+ +G+P  G +         +GQ  L+P   E+Q 
Sbjct: 134 MNAACAALVDAGIPLNGLLSAVSCGVTHDGQVFLDPTKPEEQK 176


>gi|154346012|ref|XP_001568943.1| exosome complex exonuclease RRP41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 246

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 86/259 (33%), Gaps = 21/259 (8%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR     R +    G L    GS     G ++       G RE     
Sbjct: 5   KEYVSPAGLRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKV-CASIFGPRE----- 58

Query: 364 DSLSGTQRND----FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            SL   +                 A          S+          +    V+  +   
Sbjct: 59  -SLHKQEAKHDKVLVTCEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYP 117

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              + I  E+ + DG+  +A +  + LAL+DA V +   V  I++GL+ +     +L D+
Sbjct: 118 NSQIHIYIEVLQQDGNEKVACINAACLALVDANVAMRDVVCCISVGLLDE----HMLIDL 173

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           + DE          A T      +        +  + +   L+ A++G   +        
Sbjct: 174 ANDELRSQCPVIVAAFTGHDTQNIIWLETTSRLPPDSVARLLKCAEQGAQELFE------ 227

Query: 540 SESRLQLGEFTPRVEIMAI 558
           +  R  L E   ++  + I
Sbjct: 228 TTIRKSLEEHAKKILTLQI 246



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 79/210 (37%), Gaps = 15/210 (7%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQ----DFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           DG+   T G++ V A++   R     Q    D   +T       +A G+      RR   
Sbjct: 37  DGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLVTCEVAVAAFA-GESRRNPQRRSKL 95

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             + +  + ++    I  L S+   ++  + I V+Q D      V  + AA  AL+ + +
Sbjct: 96  SEDIDAAVVQVARSVI--LLSQYPNSQIHIYIEVLQQDGNEK--VACINAACLALVDANV 151

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG----TQDAVLMVELEANQLSEDV 199
                V    V  ++   +++   DE +    + V+         ++ +E  +  L  D 
Sbjct: 152 AMRDVVCCISVGLLDEHMLIDLANDELRSQCPVIVAAFTGHDTQNIIWLETTSR-LPPDS 210

Query: 200 VLDAIIFGHNECKPVIE-AISKLAKMCAKE 228
           V   +       + + E  I K  +  AK+
Sbjct: 211 VARLLKCAEQGAQELFETTIRKSLEEHAKK 240


>gi|300865634|ref|ZP_07110407.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
 gi|300336361|emb|CBN55557.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
          Length = 369

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D V V ++D D +RG+I LS K ++   G
Sbjct: 243 NDEVKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVAGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVEAPEEVLQSNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|260887148|ref|ZP_05898411.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
           ATCC 35185]
 gi|260863210|gb|EEX77710.1| hydroxymethylbutenyl pyrophosphate reductase [Selenomonas sputigena
           ATCC 35185]
          Length = 373

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      + S      E   +    +    EV +I +G V +++++GAF+   G  D
Sbjct: 157 IEIDIRKQRLVLSRRSLLEEEREKKQEEVFSKLEVGQIIRGTVKRLVEYGAFIDI-GGVD 215

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GL HIS L+  RV + SDV+  GD V V + +FD +  +I LS+K   ++    
Sbjct: 216 GLAHISDLAWHRVKQPSDVLSVGDEVDVYVKNFDPETKRISLSVKDTMRDPWLD 269



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+      +        KG+++K+ DFGAF+      DGL+ + +L+  R+A+  + V+ 
Sbjct: 264 RDPWLDKAERYAEGTHIKGKIIKLTDFGAFMEIEPGFDGLIPMGELADRRIARADEAVQL 323

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+L  D  R +I LS+
Sbjct: 324 GDIVKVKILHIDMKRKRISLSI 345


>gi|300173207|ref|YP_003772373.1| transcription accessory protein [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887586|emb|CBL91554.1| transcription accessory protein [Leuconostoc gasicomitatum LMG
           18811]
          Length = 731

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +G V  V+DFGAFV      DGLVHIS+L+  RV   S+VV  GD V V ++D D+ R +
Sbjct: 659 QGTVRNVVDFGAFVDLGVKHDGLVHISRLAKRRVKAPSEVVAVGDIVDVWVVDIDEKRQR 718

Query: 683 IKLSM 687
           I L+M
Sbjct: 719 IGLTM 723


>gi|170017311|ref|YP_001728230.1| transcriptional accessory protein [Leuconostoc citreum KM20]
 gi|169804168|gb|ACA82786.1| Transcriptional accessory protein [Leuconostoc citreum KM20]
          Length = 733

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHIS+L   RV   S++V  GD V V +++ D  R 
Sbjct: 661 LQGTVRNVVDFGAFVDLGVKHDGLVHISRLVKRRVKHPSEIVSVGDIVNVWVVEVDQKRQ 720

Query: 682 KIKLSMKVVDQ 692
           +I L+M   ++
Sbjct: 721 RIGLTMIAPEE 731


>gi|323491001|ref|ZP_08096195.1| hypothetical protein GPDM_16571 [Planococcus donghaensis MPA1U2]
 gi|323395357|gb|EGA88209.1| hypothetical protein GPDM_16571 [Planococcus donghaensis MPA1U2]
          Length = 140

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV       GLVHIS+++   V   +D +K G+ V VK+++ 
Sbjct: 4   EVGSKLEGKVTGITNFGAFVQLPTGATGLVHISEVADNYVKDINDHLKVGEMVEVKVMNV 63

Query: 678 DDRGKIKLS-MKVVDQNTG 695
           +  GKI LS  K   Q  G
Sbjct: 64  EADGKIGLSIRKAKPQPAG 82


>gi|228474894|ref|ZP_04059623.1| protein YhgF [Staphylococcus hominis SK119]
 gi|228271126|gb|EEK12506.1| protein YhgF [Staphylococcus hominis SK119]
          Length = 715

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  ++  N IG+G   +  IV ++    N D   +         E    +  I SI D+ 
Sbjct: 590 INIEEKSNEIGIGKPTLEDIV-KSLKTPNRDPRDSY--------ETPQLKSDILSIEDLS 640

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +L+ 
Sbjct: 641 KGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKYVKNPMDIISVGDIVDVWILNI 699

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 700 DKNKEKVSLTM 710


>gi|257455894|ref|ZP_05621111.1| protein tex [Enhydrobacter aerosaccus SK60]
 gi|257446640|gb|EEV21666.1| protein tex [Enhydrobacter aerosaccus SK60]
          Length = 849

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ + S+ D+ E   + +G V  V  FG FV     +DGLVHIS++  E +A   + VK 
Sbjct: 683 RDDVNSLNDLTEGMTL-EGVVTNVTSFGCFVDVGVHQDGLVHISEMGNEFIADPLNHVKP 741

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V V+++  D +R ++  SMK
Sbjct: 742 GDIVTVRVISVDAERKRVGFSMK 764


>gi|320352187|ref|YP_004193526.1| 30S ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
 gi|320120689|gb|ADW16235.1| SSU ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
          Length = 577

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 15/246 (6%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           V G++   V         S I   E      + ++   D     ++     GG+  +   
Sbjct: 45  VVGLSSDAVLIDVGDKAESFIPLSEFRHEDPEREIKIGDQFEVFIEKRKDEGGLLLSREK 104

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR-------VEIMAIPPDQIRNVIGMGG 571
               +       I  E   +      ++             +    I    ++++  + G
Sbjct: 105 AIAIKVWEQIAKIQEEDGTIEGRIDNRVKGGMSVDIGVPAFLPYSQIDLRPVKDLDSLIG 164

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +     + +   K N      V I+  ++ E +      +  T + E  +I +G +  + 
Sbjct: 165 QTFEFKILKFNRKRN-----NVVISRRAILENQRTALREQMRTSLQEG-QIIRGAITNIT 218

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           D+G F+   G  DGL HI+ LS  RV+  S +   G+ + VK+L +D    ++ L +K +
Sbjct: 219 DYGLFIDLGGM-DGLCHITDLSWGRVSHPSKLYTVGEEIEVKILKYDKNSDRVSLGVKQL 277

Query: 691 DQNTGK 696
             +  +
Sbjct: 278 KSDPWE 283



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +          KG+VV + D+G FV      +GLVHIS++S  ++    S +V  
Sbjct: 280 DPWERVPQQYAPGSRVKGKVVSITDYGVFVELEEGVEGLVHISEMSWSKKPRHPSKIVGV 339

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+ + V++L  + +  +I L MK +  N  
Sbjct: 340 GEEIEVQVLKVEAETKRISLGMKQLQPNPW 369



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++ +    +    +G +  V DFG FV      +GLVH+S++S ++V     +    
Sbjct: 454 DPWQAASSNYPIGSTVEGTITNVTDFGVFVQLEEGIEGLVHVSEISKDKVKTPVGMFNVN 513

Query: 668 DTVWVKLLDF--DDRGKIKLSMKVVDQNT 694
           DT+   +++   DDR KI LS+K + +  
Sbjct: 514 DTLKAMVINVSADDR-KIGLSVKALQEKE 541



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDF 677
           V  + +G++  + DFG F+      DGL+H+S LS  ER+   S+   +G+T+   +L  
Sbjct: 378 VGSVIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPSEKYSKGETIQAVVLKI 437

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D +  +  L +K ++ +  +
Sbjct: 438 DKENERFSLGVKQLEPDPWQ 457


>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
           [Aedes aegypti]
          Length = 307

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 85/244 (34%), Gaps = 18/244 (7%)

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +      V  V      R  GR     R    ++G++    GS+    G+T+ IV V   
Sbjct: 25  DKTFEDRVADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSV-FD 83

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            RE              +    + F P A             E        +A+ PV+ +
Sbjct: 84  PRE---IPKQNKFRALGELYCDFKFSPFACIHRKN-PQTDAEERSLAAAMTKALQPVVCR 139

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
                + + I + + E DGS   A +  + LAL DA + +   V    + +++D     I
Sbjct: 140 HLFPNFQIDIFANVLEDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDK----I 195

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDM--------KIGGISENIMVMALQQAKRG 527
             D +  E+ L  ++   +G    IT  ++          + G IS   +  A Q+    
Sbjct: 196 YLDPTLAEERLC-LEGGKSGNHGVITLAKLHTLDQTSEILQAGDISLEKLKEACQRLNEA 254

Query: 528 RLHI 531
              I
Sbjct: 255 NNEI 258



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 80/204 (39%), Gaps = 16/204 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G T V+ +V   R +     F     L  +++   +A         R+  +
Sbjct: 64  AKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFAC------IHRKNPQ 117

Query: 84  PTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
               E  ++  + ++++P+         +  +  NV++ D      V  + AA  AL  +
Sbjct: 118 TDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAV--ITAAGLALSDA 175

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
            +     V  + V  I  +  L+P L E++  L+   SG    + + +L     + +++ 
Sbjct: 176 TISMFDIVTASTVAVIEDKIYLDPTLAEERLCLEGGKSGNHGVITLAKLHTLDQTSEILQ 235

Query: 202 DA---IIFGHNECKPVIEAISKLA 222
                +      C+ + EA +++A
Sbjct: 236 AGDISLEKLKEACQRLNEANNEIA 259


>gi|330839082|ref|YP_004413662.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746846|gb|AEC00203.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
          Length = 378

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID      + S      E   +    +    EV +I +G V +++++GAF+   G  D
Sbjct: 162 IEIDIRKQRLVLSRRSLLEEEREKKQEEVFSKLEVGQIIRGTVKRLVEYGAFIDI-GGVD 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           GL HIS L+  RV + SDV+  GD V V + +FD +  +I LS+K   ++    
Sbjct: 221 GLAHISDLAWHRVKQPSDVLSVGDEVDVYVKNFDPETKRISLSVKDTMRDPWLD 274



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+      +        KG+++K+ DFGAF+      DGL+ + +L+  R+A+  + V+ 
Sbjct: 269 RDPWLDKAERYAEGTHIKGKIIKLTDFGAFMEIEPGFDGLIPMGELADRRIARADEAVQL 328

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V VK+L  D  R +I LS+
Sbjct: 329 GDIVKVKILHIDMKRKRISLSI 350


>gi|306820879|ref|ZP_07454499.1| possible ribosomal protein S1 [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550993|gb|EFM38964.1| possible ribosomal protein S1 [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 372

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                     +V  I  G+V  + D+G F++     DG VHIS +S + V    +V+K G
Sbjct: 263 HPWDEYVKNHKVGDIVDGEVKNIKDYGVFINLYPVVDGFVHISNISEDFVKNPGEVLKVG 322

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           DTV VK++  ++   KI+LSM ++++   +
Sbjct: 323 DTVQVKIIGLNEEDKKIELSM-LLEEKQEE 351



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E     +++D      I S          E ++ +++  E  K +KG V  V D+G FV 
Sbjct: 149 EFEAEVLDVDPKKRRLILSRKSILQRVQDEKLKELSETIEEGKTFKGIVKDVKDYGVFVD 208

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
             G   GLVH+S++S  R  K  D+ K    + V++L+F  +  ++ LS+K ++ +    
Sbjct: 209 IGGMV-GLVHVSEVSWNRSKKLKDMFKIEQEIDVQVLNFSLEEKRLSLSIKSLEPHPWDE 267

Query: 698 IV 699
            V
Sbjct: 268 YV 269


>gi|302874418|ref|YP_003843051.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690976|ref|ZP_07633422.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577275|gb|ADL51287.1| RNA binding S1 domain protein [Clostridium cellulovorans 743B]
          Length = 308

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              +    +  SI D   V  I + +VVK++ FGA V      +GLVH SQ+S +RV   
Sbjct: 183 ELSKKMDNLWESIDDKYRVGDIVETKVVKLLKFGAIVKLEEGVEGLVHNSQISDDRVMNP 242

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
            D +KEG  + VK+L  D  + KI LS K 
Sbjct: 243 GDYLKEGQDIKVKILTIDKVQKKISLSYKE 272



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 9/182 (4%)

Query: 517 MVMALQQAKRGRLHILN---EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
           M   + Q       I+       +V+S +   +      ++   IP ++    +    K 
Sbjct: 7   MKDFMDQIDNSMKRIVKGQMVEGEVVSVTEEDVLVSIGHMKDGIIPKEKATFDMSKSLKE 66

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
              + +   A V ++DDG  KI  S +     +      +  +    +I++  V + +  
Sbjct: 67  QFNLGDIIKAYVEVEDDGEGKILLSKVKLDRES--SWDELQRLHNTQEIFEVTVKEAVKG 124

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GA     G R   +  SQLS   V   S  V +   + VKL++ + D  ++ LS K V++
Sbjct: 125 GATTELYGVR-AFIPASQLSMSYVEDISAFVNK--VLKVKLIELNKDNRRVILSAKEVER 181

Query: 693 NT 694
           + 
Sbjct: 182 DE 183



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    ++   + I +        ++ +G+VV V +    V     +DG++   + + + 
Sbjct: 1   MTDNNSMKDFMDQIDNSMKRIVKGQMVEGEVVSVTEEDVLVSIGHMKDGIIPKEKATFDM 60

Query: 657 VAKTSDVVKEGDTVWVKL-LDFDDRGKIKLSMKVVDQNT 694
                +    GD +   + ++ D  GKI LS   +D+ +
Sbjct: 61  SKSLKEQFNLGDIIKAYVEVEDDGEGKILLSKVKLDRES 99


>gi|332654043|ref|ZP_08419787.1| S1 RNA binding domain protein [Ruminococcaceae bacterium D16]
 gi|332517129|gb|EGJ46734.1| S1 RNA binding domain protein [Ruminococcaceae bacterium D16]
          Length = 720

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 14/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           + +  + G G   +  I+ E      +  D+           ++  A+++        + 
Sbjct: 598 ENLSEICGAGVPTLADIIKELMKPGRDPRDE---LPPPILRTDVMEAKDL--------KP 646

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
               +G V  V+DFG FV     +DGLVHIS+L   RV   S+++  GD V V +L  D+
Sbjct: 647 GMELQGTVRNVIDFGVFVDIGVHQDGLVHISKLP-RRVKHPSELLSVGDVVTVWVLSVDE 705

Query: 680 -RGKIKLSMK 688
            + +I L+MK
Sbjct: 706 GKKRISLTMK 715


>gi|149184781|ref|ZP_01863099.1| 30S ribosomal protein S1 [Erythrobacter sp. SD-21]
 gi|148832101|gb|EDL50534.1| 30S ribosomal protein S1 [Erythrobacter sp. SD-21]
          Length = 553

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E  ++  G V  + D+GAFV   G  DGL+H++
Sbjct: 159 GNIVVSRRAVLEETRAEQRSELIDKLAEG-QVIDGVVKNITDYGAFVDL-GGIDGLLHVT 216

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            +S +RV   S++++ G TV V+++  ++   +I L MK ++ +  
Sbjct: 217 DMSYKRVNHPSEMIEIGQTVTVQIIRINEDTQRISLGMKQLESDPW 262



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           ++I      T   + I++D           E     +    +     V     G V  + 
Sbjct: 228 EMIEIGQTVTVQIIRINEDTQRISLGMKQLES----DPWDGVAAKYPVGMKLTGTVTNIT 283

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           ++GAFV      +GLVH+S++S  ++      +V     V V +L+ D ++ +I L +K 
Sbjct: 284 EYGAFVEIEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEVDSEKRRISLGLKQ 343

Query: 690 VDQNTGKP 697
             +N  + 
Sbjct: 344 AQRNPWEE 351



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 90/254 (35%), Gaps = 38/254 (14%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  D+    D+ G +   H+  M +K     S +  +   + +  I          
Sbjct: 192 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEMIEIGQTVTVQII---------- 241

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRGI 577
           +       I   M ++ S+    +    P    +      I        I  G + +  +
Sbjct: 242 RINEDTQRISLGMKQLESDPWDGVAAKYPVGMKLTGTVTNITEYGAFVEIEPGIEGLVHV 301

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEI---------------EAAREMIRSITDVPEVNKI 622
            E +  K N+     V  +      +               +A R       +   V   
Sbjct: 302 SEMSWTKKNVHPGKIVSTSQEVEVMVLEVDSEKRRISLGLKQAQRNPWEEFAEAHPVGAK 361

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD- 678
             G+V    +FG F+   G  DG+VH+S ++        D +   ++G+ V   +LD D 
Sbjct: 362 VTGEVKNATEFGLFIGLPGDVDGMVHMSDIAWG--ISGEDALALHRKGEEVEAIVLDVDI 419

Query: 679 DRGKIKLSMKVVDQ 692
           D+ +I L MK +++
Sbjct: 420 DKERISLGMKQLEK 433



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE     V+ID +      S  + ++E               N++    V++V D G  V
Sbjct: 410 VEAIVLDVDIDKE----RISLGMKQLEKGAPTEAGAQSDVRKNQVVTVTVLEVRDGGLEV 465

Query: 638 HFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
                   G +  S L  +R  + SD  + G  V   +  FD   K   S+K 
Sbjct: 466 QVGEDGATGFIKRSDLGRDRDEQRSDRFQPGAKVDAMVTGFDRSKKPTFSIKA 518


>gi|323126833|gb|ADX24130.1| putative transcription accessory protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 710

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           ++  + IP  Q+   +G+G + +  I+ +      ++ DD    I           R+ I
Sbjct: 579 KLAAVTIP--QMAETLGIGLETLNDIITDLLKPGRDLRDDFEAPIL----------RQDI 626

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
             + D+    K+ +G V  V+DFGAFV      DGLVHIS++S   V   S VV  GD V
Sbjct: 627 LDLKDLAIGQKL-EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLV 685

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V +   D DR K+ LS+
Sbjct: 686 TVWVSKIDLDRHKVNLSL 703


>gi|251782010|ref|YP_002996312.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390639|dbj|BAH81098.1| hypothetical protein SDEG_0596 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 710

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           ++  + IP  Q+   +G+G + +  I+ +      ++ DD    I           R+ I
Sbjct: 579 KLAAVTIP--QMAETLGIGLETLNDIITDLLKPGRDLRDDFEAPIL----------RQDI 626

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
             + D+    K+ +G V  V+DFGAFV      DGLVHIS++S   V   S VV  GD V
Sbjct: 627 LDLKDLAIGQKL-EGTVRNVVDFGAFVDIGVHEDGLVHISEMSKTFVNHPSQVVSVGDLV 685

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V +   D DR K+ LS+
Sbjct: 686 TVWVSKIDLDRHKVNLSL 703


>gi|331268347|ref|YP_004394839.1| RNA binding S1 domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329124897|gb|AEB74842.1| RNA binding S1 domain protein [Clostridium botulinum BKT015925]
          Length = 136

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  
Sbjct: 4   KLGSILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISV 62

Query: 678 DDRGKIKLSMKVVDQN--TGKPI 698
           DD G++ LS+K    +  + KP+
Sbjct: 63  DDSGRLSLSIKQAMPSRKSAKPV 85


>gi|292670676|ref|ZP_06604102.1| YhgF like protein [Selenomonas noxia ATCC 43541]
 gi|292647703|gb|EFF65675.1| YhgF like protein [Selenomonas noxia ATCC 43541]
          Length = 729

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G V  + DFGAF+     + GL+HIS++S  RV    D++  GD + V ++  D
Sbjct: 650 IGTILPGTVRNITDFGAFIDIGLKQAGLLHISEMSCRRVRHPLDILSVGDALDVMIISVD 709

Query: 679 -DRGKIKLSMKVVDQN 693
            +R +I LS+K + + 
Sbjct: 710 EERERIGLSLKRIKKE 725


>gi|289435636|ref|YP_003465508.1| S1 RNA binding domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171880|emb|CBH28426.1| S1 RNA binding domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313636541|gb|EFS02268.1| general stress protein 13 [Listeria seeligeri FSL S4-171]
          Length = 117

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G++  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGEVVSGKIAGIQSYGAFVALDDSTQGLVHISEITHGFVKDIHDFLEVGQVVKVKILDI 64

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D ++ KI LS++  +    +
Sbjct: 65  DEEKNKISLSIRATEDAPKE 84


>gi|229829540|ref|ZP_04455609.1| hypothetical protein GCWU000342_01636 [Shuttleworthia satelles DSM
           14600]
 gi|229791529|gb|EEP27643.1| hypothetical protein GCWU000342_01636 [Shuttleworthia satelles DSM
           14600]
          Length = 818

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + KG V  V+DFGAFV     +DGLVHIS++S   +    + V  GD V V+++  
Sbjct: 641 KPGMVLKGTVRNVVDFGAFVDIGVHQDGLVHISRISDRFIKHPLEAVSVGDIVDVQVVAV 700

Query: 678 D-DRGKIKLSMK 688
           D D+ ++ LSM+
Sbjct: 701 DLDKQRVALSMR 712


>gi|281421926|ref|ZP_06252925.1| protein YhgF [Prevotella copri DSM 18205]
 gi|281403980|gb|EFB34660.1| protein YhgF [Prevotella copri DSM 18205]
          Length = 710

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V  +  FGAFV      DGLVH+SQ+S   +   S+VVK  + V V++ + 
Sbjct: 636 QVGMVVPGIVTNITKFGAFVDIGVHNDGLVHVSQMSNRYIQDPSEVVKLHEHVMVRVAEV 695

Query: 678 D-DRGKIKLSMKVV 690
           D  R +I LSMK V
Sbjct: 696 DLKRKRIALSMKGV 709


>gi|326800528|ref|YP_004318347.1| RNA binding S1 domain protein [Sphingobacterium sp. 21]
 gi|326551292|gb|ADZ79677.1| RNA binding S1 domain protein [Sphingobacterium sp. 21]
          Length = 646

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    K+N +    V      + +          I    E  ++ +G V  + DFG F+ 
Sbjct: 219 EFKVVKINHEFKNVVVSHKVLIEDDLE--NQKSEIVAKLEKGQVLEGTVKNITDFGVFID 276

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             G  DGL+HI+ +S  R+    +V+   + + V +LDFDD + +I L +K +  +  + 
Sbjct: 277 L-GGVDGLLHITDISWGRIEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWES 335

Query: 698 I 698
           +
Sbjct: 336 L 336



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 99/255 (38%), Gaps = 26/255 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHL----------GHMDFKVAGT-DSGITAMQMDMKIGGIS 513
           G VK      ++ DI G E  L             D  V  T +  +  +  + K   +S
Sbjct: 176 GYVKSRTKGGLIVDIKGVEAFLPGSQIDIKPIRDYDIYVGKTMEFKVVKINHEFKNVVVS 235

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             +++    + ++  +    E  +VL  +   + +F      + I    +  ++ +    
Sbjct: 236 HKVLIEDDLENQKSEIVAKLEKGQVLEGTVKNITDF-----GVFIDLGGVDGLLHITDIS 290

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G +E     +++D+   V +      +   A            S+     V    KG+
Sbjct: 291 -WGRIEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWESLDPALAVGSKVKGK 349

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V V D+GAF+      +GL+H+S++S  +      + +K GD +  ++L  D +  K+ 
Sbjct: 350 IVTVADYGAFLEITPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEVLTLDREERKMS 409

Query: 685 LSMKVVDQNTGKPIV 699
           L +K +  +  K I 
Sbjct: 410 LGIKQLTPDPWKNIA 424



 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  ++I +   +   +K  V  + +FG FV      DGL+HIS LS  +++   ++  K 
Sbjct: 418 DPWKNIAERYPIGSKHKAVVKNMTNFGVFVEIEEGVDGLIHISDLSWSKKINHPNEFTKV 477

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           G+ + V +L+ D+  + + L  K +++N  
Sbjct: 478 GEELDVVVLELDEENRKLSLGHKQLEENPW 507


>gi|163814142|ref|ZP_02205534.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759]
 gi|158450591|gb|EDP27586.1| hypothetical protein COPEUT_00296 [Coprococcus eutactus ATCC 27759]
          Length = 649

 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E  + + D  EV    +G V  V  FGAF+   GA DGL+HIS++S  RV     V+K G
Sbjct: 466 EAAKELFDRIEVGMTVEGVVKNVTSFGAFIDLGGA-DGLLHISEMSWGRVEDPKSVLKVG 524

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           D V   + + D   KI LS+K  D N  
Sbjct: 525 DKVKAFIKNIDGE-KIALSLKFDDTNPW 551



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +      +  G+V ++ DFGAF+      D L+H+SQ+S + V K  DV K GD
Sbjct: 550 PWLNADEKYAPGTVVTGKVARMADFGAFIELEPGVDALLHVSQISYDHVNKPEDVYKVGD 609

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V  ++++ +    KI LS+K +     +
Sbjct: 610 VVEAEVVECNAADKKISLSVKSLLPVPSE 638



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                  A            +  +I +G+V+ V      V      DG++  ++ +    
Sbjct: 282 RMDEMNFAELLENDESRGSIKTGEIVEGRVIDVKPDEIIVDISYKSDGVIPRNEYTNTPN 341

Query: 658 AKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV 690
           A  +++V  GD +  K++   D  G + LS K V
Sbjct: 342 ADLTELVHVGDAITAKVVKTNDGEGSVLLSYKRV 375


>gi|294673916|ref|YP_003574532.1| 30S ribosomal protein S1 [Prevotella ruminicola 23]
 gi|294472255|gb|ADE81644.1| ribosomal protein S1 [Prevotella ruminicola 23]
          Length = 592

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A++  + I   
Sbjct: 157 QIDVHPIRDYDQFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  RV     VV+    + V +LD
Sbjct: 211 LEKGQILEGTVKNITSYGVFVDL-GGVDGLIHITDLSWGRVDDPHKVVELDQKINVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKRRIALGLKQLTPHPW 289



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 374 DPWEAIETKYPVGSKHTAKVRNFTNFGVFVELEEGVDGLIHISDLSWTKKVKHPSEFTQV 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+ + V +LD D +  ++ L  K +++N  
Sbjct: 434 GEQIEVVVLDIDKENRRLSLGHKQLEENPW 463



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 98/258 (37%), Gaps = 26/258 (10%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKI 509
            I  G +K      ++ D+ G E  L      V              +  +  +  + + 
Sbjct: 128 AIIQGYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDQFVGKTMEFKVVKINQEFRN 187

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
             +S   ++ A  +A++  +    E  ++L  +   +  +      + +    +  +I +
Sbjct: 188 VVVSHKALIEAELEAQKKEIIGKLEKGQILEGTVKNITSY-----GVFVDLGGVDGLIHI 242

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKI 622
                 G V+     V +D    V I      +   A            ++    +V   
Sbjct: 243 TDLS-WGRVDDPHKVVELDQKINVVILDFDDEKRRIALGLKQLTPHPWDALDADLKVGDH 301

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            KG+VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D 
Sbjct: 302 VKGKVVVIADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFLKVGDDVEAVILTLDRDE 361

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K+ L +K + ++  + I
Sbjct: 362 RKMSLGIKQLREDPWEAI 379



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+     +A+ S  E++ A +   +       +++ +G V+ +      V+     DG++
Sbjct: 17  DEFENGTVANVSKEELDKAYDETLNKVAD---HQVVEGTVISIDKKEVVVNIGYKSDGII 73

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V +    D +G++ LS K
Sbjct: 74  PASEFRY----NPD--LKIGDKVEVYVESAEDKKGQLILSHK 109


>gi|212638049|ref|YP_002314569.1| transcriptional accessory protein Tex, contains RNAse H and S1
           domains [Anoxybacillus flavithermus WK1]
 gi|212559529|gb|ACJ32584.1| Transcriptional accessory protein Tex, contains RNAse H and S1
           domains [Anoxybacillus flavithermus WK1]
          Length = 733

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I  +++   + +G   ++ I++     + +  DD    I    + ++E  R+ +      
Sbjct: 603 INIEEVAQELNIGILTLQDIIDALNRPERDPRDDLPKPILKKHVLKMEDLRKGME----- 657

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                  +G V  V+DFG FV     +DGLVHIS+LST  V    DVV  GD V V +  
Sbjct: 658 ------LEGTVRNVVDFGVFVDIGVKQDGLVHISKLSTRYVKHPLDVVSVGDIVKVWVDS 711

Query: 677 FD-DRGKIKLSM 687
            D  + +I L+M
Sbjct: 712 VDLQKERIALTM 723


>gi|328947116|ref|YP_004364453.1| Tex-like protein [Treponema succinifaciens DSM 2489]
 gi|328447440|gb|AEB13156.1| Tex-like protein [Treponema succinifaciens DSM 2489]
          Length = 784

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 9/227 (3%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           +G+  +     +L  +SG    L         T+  IT+ +   K+ G+           
Sbjct: 501 VGVNLNTASASLLKYVSGINSSLAKKIVAYRDTNGKITSREDLKKVSGLGPKAFEQ---- 556

Query: 524 AKRGRLHILNEMSKVLSE-SRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
              G L I    + + +     +  E    V  +    ++I   +    +    + E T 
Sbjct: 557 -CAGFLKIPESSNPLDNTWVHPENYEVAKEVLPLVQKKEKISAELKKQLEEKYSVGETTI 615

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
              +I ++                 +      +  +V     G++  V+DFGAFV     
Sbjct: 616 N--DIVEELAKPNRDPRDGYPAPIMQKGVLNFEDLKVGMKVTGKIKNVVDFGAFVDIGLH 673

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             GL+HIS+LS   V+   DV+K GD     ++D D DR +I LS+K
Sbjct: 674 ETGLIHISELSDSFVSDPMDVIKVGDVKEFTIIDLDTDRKRISLSLK 720


>gi|322391920|ref|ZP_08065384.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
 gi|321145146|gb|EFX40543.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
          Length = 709

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 18/230 (7%)

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LS ++G    +     K    +  IT+     K+  +       A    +      + 
Sbjct: 487 ALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESSNIL 546

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI-VEQTGAKVNIDDDGT 592
           + + V  E+   + E   R+         I+++   G   ++ I +++   ++++  +  
Sbjct: 547 DNTGVHPENYAAVKELFKRL--------DIKDLNEEGQAKLKSISIKEMAQELDLGQETL 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARD 644
             I +  L      R+   +     +V  I         +G V  V+DFGAFV      D
Sbjct: 599 KDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLKVGQKLEGVVRNVVDFGAFVDIGIHED 658

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GL+HIS +S + +   S VV  GD V V +   D  R K+ LS+   D++
Sbjct: 659 GLIHISHMSKKFIKHPSQVVSVGDLVTVWVKKIDVQREKVNLSLLAPDES 708


>gi|301060657|ref|ZP_07201483.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
 gi|300445240|gb|EFK09179.1| putative ribosomal protein S1 [delta proteobacterium NaphS2]
          Length = 295

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G + ++  ++ E+E A +  + + ++ E   + +G V  + D+G F+   G  DGLVH+
Sbjct: 41  QGNIVLSRRAVLEVERAAQREKVLENLEEGV-VIEGAVTNITDYGLFIDL-GGIDGLVHV 98

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + ++  +    S++ + GD + VK+L FD ++ ++ L +K +  +  
Sbjct: 99  TNIAWSKTGHPSELYQIGDKIKVKVLSFDREKERVSLGIKQLTADPW 145



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +    I +   V     G++  +  +GAFV      +GLVHIS++S  R V   S++++ 
Sbjct: 143 DPWTGIEEKYPVGTKVTGRIATLKKYGAFVELEEGVEGLVHISEMSWTRKVMHPSELLRV 202

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            DTV   +L  D  + +I LS+K ++ N  
Sbjct: 203 DDTVETVVLSLDVPKKRISLSIKQLEPNPW 232



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
               IT+   +  I +G++  + DFG FV      DGLVHIS +S  +++   S++ K
Sbjct: 231 PWDVITEEYPIGAIIEGKIKNITDFGVFVGIDKGIDGLVHISDISWTKQLKHPSELYK 288


>gi|110741951|dbj|BAE98916.1| hypothetical protein [Arabidopsis thaliana]
          Length = 631

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTV-----KIASSSLAEIEAAREMIRSITDVPEVNKI-- 622
           G  V+  + EQ    V  +D  TV        + +      AR   +S     +  ++  
Sbjct: 76  GTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVP 135

Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
              + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  +I L+M+  D    +
Sbjct: 196 ESKRISLTMRENDDPPKR 213



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---SDVVKEGDTVWVKLLDF 677
           ++  G V  +   GAF+      +G +  ++ + + +         ++ G  V V++L  
Sbjct: 249 QMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEADDGIGSMMMGGSSLQAGQEVKVRVLRI 308

Query: 678 DDRGKIKLSMKVVDQNTGK 696
             RG++ L+MK  +++ GK
Sbjct: 309 -ARGRVTLTMK--EEDDGK 324


>gi|302876593|ref|YP_003845226.1| RNA binding S1 domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307687267|ref|ZP_07629713.1| hypothetical protein Ccel74_03866 [Clostridium cellulovorans 743B]
 gi|302579450|gb|ADL53462.1| RNA binding S1 domain protein [Clostridium cellulovorans 743B]
          Length = 133

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I  G VV +  FGAFV   G + GLVHIS+++   V    + +KE D V VK+L  
Sbjct: 4   KAGTIVDGVVVNITKFGAFVEVEG-KTGLVHISEVADNYVKDIKEHLKEQDKVKVKVLSV 62

Query: 678 DDRGKIKLSMKVVDQN 693
           ++ GKI LS+K  +  
Sbjct: 63  EEDGKISLSIKQANPT 78


>gi|152974085|ref|YP_001373602.1| RNA-binding S1 domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022837|gb|ABS20607.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 722

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAF+     +DGLVHIS+LS + V    D+V  G  V V + D D  +G
Sbjct: 653 LEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVKVWVDDVDMKKG 712

Query: 682 KIKLSM 687
           ++ LSM
Sbjct: 713 RVALSM 718


>gi|258515025|ref|YP_003191247.1| RNA binding S1 domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778730|gb|ACV62624.1| RNA binding S1 domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 718

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI-VEQTGAKVNIDDDGT 592
           + + +  ES  Q+ +F   +    +         G   + ++ I +++   K++I     
Sbjct: 556 DKTPIHPESYDQVKKFLKEIGCSMMEVGS-----GKMKERLKNIVIDEMALKLDIGLPTL 610

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARD 644
             I  S        RE +       +V KI         KG V  V+DFGAFV      D
Sbjct: 611 KDIIESLEKPGRDPREELPKPIFRTDVLKIEDLQVGMELKGTVRNVVDFGAFVDIGVKVD 670

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G+VH S+L T R +   DV+  GD V VK+L  D +R ++ L++
Sbjct: 671 GMVHKSELGTRRFSHPMDVLSVGDIVTVKVLSVDLERQRVALTL 714


>gi|307110751|gb|EFN58986.1| hypothetical protein CHLNCDRAFT_137613 [Chlorella variabilis]
          Length = 1006

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 5/95 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLST-ERVAKTSDVV 664
               + D PE+  +Y+G+V  VMDFG FV   G R   +GLVH+S +S+ +R     D+V
Sbjct: 208 REEPLPDEPEMYGVYRGRVTGVMDFGCFVELQGFRTKQEGLVHLSNISSTKRAGSAKDMV 267

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            +GD VWVK++    + ++ L+M+ VDQ TG+ ++
Sbjct: 268 GKGDPVWVKIVSKTGQ-RLGLAMRDVDQVTGEDLL 301


>gi|302035807|ref|YP_003796129.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
 gi|300603871|emb|CBK40203.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
          Length = 571

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +R++ G+ GK     +     K+N    G V ++   L E    R    +++ +
Sbjct: 143 QIDLHPVRDLDGLVGKTFPLKI----IKIN-HRRGNVVVSRRVLLEETRDRRRQTTLSTL 197

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   I +G V  + D+GAF+   G  DGL+HI+ +S  RV   S++ +  D V V +L 
Sbjct: 198 KEGQLI-QGTVKNITDYGAFIDL-GGIDGLLHITDMSWGRVGHPSELFQVSDKVEVTVLK 255

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           +D + G+I L +K    +  
Sbjct: 256 YDRETGRISLGLKQKSADPW 275



 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSD 662
           + + +    +     V    +G+VV + D+GAFV      +GLVH+S++S    V   S 
Sbjct: 269 QKSADPWTGVAAKYPVGTRVRGRVVSLTDYGAFVELEPGVEGLVHVSEMSWTHEVRHPSR 328

Query: 663 VVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           VV  GD V   +L+ D    KI L MK    N  
Sbjct: 329 VVSVGDQVEAAVLNIDPGSRKISLGMKQTAPNPW 362



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G+ KI+           +MI +    P   +I +G+V  + DFGAFV      DGL+H
Sbjct: 344 DPGSRKISLGMKQTAPNPWDMIEAKY--PAGTRI-EGKVKSLTDFGAFVGLEEGIDGLIH 400

Query: 649 ISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           IS +S  + +   S++ K+G  V   ++  D ++ ++ L  K + ++  + 
Sbjct: 401 ISDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEKERLSLGYKQLSRDPWEE 451



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                I +   V     G+V K+ DFG F+   G  +GL+HIS++  +   +  +  K G
Sbjct: 448 PWEEQIPNKYRVGDSITGKVSKIADFGLFIELDGDVEGLIHISEVGLDANVRMEEKFKPG 507

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  KI LS++ 
Sbjct: 508 DDVTAKIIKVDRDERKIALSLRD 530


>gi|223043965|ref|ZP_03614006.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|222442680|gb|EEE48784.1| conserved hypothetical protein [Staphylococcus capitis SK14]
          Length = 716

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAF+     +DGLVH+S+LS + V    D+V  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWILDIDENKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|303237351|ref|ZP_07323921.1| 30S ribosomal protein S1 [Prevotella disiens FB035-09AN]
 gi|302482738|gb|EFL45763.1| 30S ribosomal protein S1 [Prevotella disiens FB035-09AN]
          Length = 591

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 11/184 (5%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S   +  AL+     + +I +     +      +  F P      I    IR+     GK
Sbjct: 115 SWENINEALETDAVIQGYIKSRTKGGMIVDVFGIEAFLPGS---QIDVHPIRDYDVFVGK 171

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
            +   V     K+N +    V    + +     A+   + I    E  +I +G V  +  
Sbjct: 172 TMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISHLEKGQILEGVVKNITS 225

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +G FV   G  DGL+HI+ LS  R+    +VV+    + V +LDFD ++ +I L +K + 
Sbjct: 226 YGVFVDL-GGVDGLIHITDLSWGRINDPHEVVELDQKINVVILDFDEEKKRIALGLKQLA 284

Query: 692 QNTG 695
            +  
Sbjct: 285 PHPW 288



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 96/258 (37%), Gaps = 26/258 (10%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKI 509
            +  G +K      ++ D+ G E  L      V              +  +  +  + + 
Sbjct: 127 AVIQGYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRN 186

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
             +S   ++ A  +A+R  +    E  ++L      +  +      + +    +  +I +
Sbjct: 187 VVVSHKALIEAELEAQRKEIISHLEKGQILEGVVKNITSYG-----VFVDLGGVDGLIHI 241

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKI 622
                 G +      V +D    V I      +   A            ++    +V   
Sbjct: 242 TDLS-WGRINDPHEVVELDQKINVVILDFDEEKKRIALGLKQLAPHPWDALDPNLKVGDH 300

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            KG+VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D 
Sbjct: 301 VKGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKAGDEVEAVVLTLDRDE 360

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K+ L +K + ++  + I
Sbjct: 361 RKMSLGIKQLREDPWEAI 378



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 373 DPWEAIEAKYPVGSKHNAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTQT 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K ++ N  
Sbjct: 433 GAEIDVVVLEIDKENRRLSLGHKQLETNPW 462



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           ++         +  E+  A +   +       +++ +G+V+ +      V+     DG++
Sbjct: 16  EEFENGVTVGGNKEELTKAYDDTLNKIHE---HEVVEGEVISIDKKEVIVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV-DQNTGKPI 698
             S+            +K GD V V + + +DR G++ LS K    Q + + I
Sbjct: 73  PASEFRY----NPE--LKVGDKVEVYVENQEDRGGQLVLSHKKARLQKSWENI 119


>gi|329725334|gb|EGG61817.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU144]
          Length = 392

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G 
Sbjct: 268 PFENIKGEFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 328 QVNVKILGIDEDNERISLSIKA 349



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E         SI D  
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQLENDAKKASILDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
               +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+         
Sbjct: 192 NEGDVIDGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSV 250

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             D  +I LS+K       + I
Sbjct: 251 EKDSERISLSIKDTLPTPFENI 272



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        +D G   LS + ++
Sbjct: 64  GDEVEAYVTKIEFDEENDTGAYILSKRQLE 93


>gi|314934139|ref|ZP_07841500.1| S1 RNA binding domain protein [Staphylococcus caprae C87]
 gi|313653044|gb|EFS16805.1| S1 RNA binding domain protein [Staphylococcus caprae C87]
          Length = 716

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAF+     +DGLVH+S+LS + V    D+V  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWILDIDENKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
 gi|108877466|gb|EAT41691.1| conserved hypothetical protein [Aedes aegypti]
          Length = 307

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 85/244 (34%), Gaps = 18/244 (7%)

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLG 355
           +      V  V      R  GR     R    ++G++    GS+    G+T+ IV V   
Sbjct: 25  DKTFEDRVADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSV-FD 83

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQ 415
            RE              +    + F P A             E        +A+ PV+ +
Sbjct: 84  PRE---IPKQNKFRALGELYCDFKFSPFACIHRKN-PQTDAEERSLAAAMTKALQPVVCR 139

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
                + + I + + E DGS   A +  + LAL DA + +   V    + +++D     I
Sbjct: 140 HLFPNFQIDIFANVLEDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDK----I 195

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDM--------KIGGISENIMVMALQQAKRG 527
             D +  E+ L  ++   +G    IT  ++          + G IS   +  A Q+    
Sbjct: 196 YLDPTLAEERLC-LEGGKSGNHGVITLAKLHTLDQTSEIRQAGDISLEKLKEACQRLNEA 254

Query: 528 RLHI 531
              I
Sbjct: 255 NNEI 258



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 76/205 (37%), Gaps = 14/205 (6%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESR 83
           + G+     G T V+ +V   R +     F     L  +++   +A         R+  +
Sbjct: 64  AKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFKFSPFAC------IHRKNPQ 117

Query: 84  PTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
               E  ++  + ++++P+         +  +  NV++ D      V  + AA  AL  +
Sbjct: 118 TDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAV--ITAAGLALSDA 175

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
            +     V  + V  I  +  L+P L E++  L+   SG    + + +L     +   + 
Sbjct: 176 TISMFDIVTASTVAVIEDKIYLDPTLAEERLCLEGGKSGNHGVITLAKLHTLDQT-SEIR 234

Query: 202 DAIIFGHNECKPVIEAISKLAKMCA 226
            A      + K   + +++     A
Sbjct: 235 QAGDISLEKLKEACQRLNEANNEIA 259


>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton tonsurans CBS 112818]
          Length = 286

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E ++   + +  Q+ 
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVH-GPAEGKRSETAGAAAQKK 73

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                              G   +         R A  P +        T+ +   +  S
Sbjct: 74  K------------STTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSS 121

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           DGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 122 DGSLFAACLNACTLALVDAGIPMPGLLCACTVGM 155



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 15/132 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           S G+   + G T VL TV      K             E   A  +             +
Sbjct: 37  SSGSSYLSMGNTAVLCTVHGPAEGKRS-----------ETAGAAAQKKKSTTGSGGGDRQ 85

Query: 87  NEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
               ++  +  + +P        ++   V ++V+  D   S     + A + AL+ +G+P
Sbjct: 86  ATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDG--SLFAACLNACTLALVDAGIP 143

Query: 145 FEGPVVGAQVDY 156
             G +    V  
Sbjct: 144 MPGLLCACTVGM 155


>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
 gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
          Length = 278

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 66/178 (37%), Gaps = 17/178 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G    E      +G    
Sbjct: 15  RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVH-GPA--EGKRSETAGAAGA 71

Query: 373 DFMMHYNFLPCATGEVSRM-----GAPSRR-EIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
              +  N    A  +  +      G   R+       L R A  P +        T+ I 
Sbjct: 72  VINVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIH 131

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
             +  SDGS   A +   +LAL+DAG+P+         G     +    L DIS  E+
Sbjct: 132 VSVLSSDGSLFAACLNACTLALVDAGIPMP--------GWGGINESLDPLLDISAPEE 181



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDF----FPLTVNYQERTYA-VGKIPGGYLRRE 81
           S G+   + G T VL TV      K  +        + V      +A V +         
Sbjct: 37  SSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVINVVVNLAGFANVDRKKKSATGSG 96

Query: 82  SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
               +    ++ ++  + +P        ++   + ++V+  D   S     + A + AL+
Sbjct: 97  GGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVSVLSSDG--SLFAACLNACTLALV 154

Query: 140 LSGLPFEG 147
            +G+P  G
Sbjct: 155 DAGIPMPG 162


>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
 gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
          Length = 280

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 26/190 (13%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            +++R                 +RD+  ++G+L +  GS  F +G+T  I  V  G    
Sbjct: 3   KQILRRDQRKTS--------NQLRDMQVELGVLGKADGSVKFSQGNTTVICSV-CGPESS 53

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            +        + +  ++   F P       R    S  E  +  + R+ +  V+      
Sbjct: 54  MK-------EKGDQAIIDVMFQP-------RDKKASEEEKEYELIIRQTLENVILTNIYP 99

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              + I  ++ + DG    A++  +SLAL+DAGV +   +   +   +  GD    L D 
Sbjct: 100 RTVITISIQVVQYDGCLLSASLNAASLALLDAGVAMKTTLVSSSCSYLNSGD---CLLDP 156

Query: 480 SGDEDHLGHM 489
           +  E     +
Sbjct: 157 TRIEQDFSSI 166



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 18/164 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDR-SLKDGQDFFPLTVNYQERTYAVGK 72
           R +++E G + + +DG+V  + G T V+ +V     S+K+  D   + V +Q        
Sbjct: 18  RDMQVELGVLGK-ADGSVKFSQGNTTVICSVCGPESSMKEKGDQAIIDVMFQP------- 69

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
                  R+ + +E E     +I +++  +        T + I++     +      S+ 
Sbjct: 70  -------RDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVVQYDGCLLSASLN 122

Query: 133 AASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPR-LDEDQGSL 174
           AAS AL+ +G+  +  +V +   Y+N G  +L+P  +++D  S+
Sbjct: 123 AASLALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIEQDFSSI 166


>gi|242242755|ref|ZP_04797200.1| 30S ribosomal protein S1 [Staphylococcus epidermidis W23144]
 gi|242233891|gb|EES36203.1| 30S ribosomal protein S1 [Staphylococcus epidermidis W23144]
 gi|319400825|gb|EFV89044.1| putative ribosomal protein S1 [Staphylococcus epidermidis FRI909]
          Length = 392

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G 
Sbjct: 268 PFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 328 QVNVKILGIDEDNERISLSIKA 349



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E         SI D  
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQLENDAKKASILDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
               +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+         
Sbjct: 192 NEGDVIDGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSV 250

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             D  +I LS+K       + I
Sbjct: 251 EKDSERISLSIKDTLPTPFENI 272



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        +D G   LS + ++
Sbjct: 64  GDEVEAYVTKIEFDEENDTGAYILSKRQLE 93


>gi|168025428|ref|XP_001765236.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683555|gb|EDQ69964.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 421

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           ++ G+V  V  +GAFV      DGLVHIS+L+ + V + +DVV  G  V V++L+ +++ 
Sbjct: 139 VFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLELNEKA 198

Query: 681 GKIKLSMKVVDQNTGK 696
           G+I L+M+  +    +
Sbjct: 199 GRIALTMRDRENEEEE 214



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 17/236 (7%)

Query: 459 VAGIAM-GLVKDGDDFIILSDISGDED---HLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           VAG    G V+    +    DI    D   H+  +  K     + + ++  ++ +  +  
Sbjct: 135 VAGAVFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLEL 194

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
           N     +    R R +   E S                     +   +I    G GG   
Sbjct: 195 NEKAGRIALTMRDRENEEEEQSSRPGSESSAGSGSGGEESGRPVNRGKIAGR-GSGGSRS 253

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
                +   + +  +      +     ++              +  +  KG V  ++  G
Sbjct: 254 NSRASEPKVRRSGVEGDGRNRSDGRGLQVG---------WTKLKKGEELKGTVKNIIRNG 304

Query: 635 AFVHFCG-ARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           AF+ F     +  +  S+++         +++  G  V V++L   +RGK  L+MK
Sbjct: 305 AFIEFAEQGEEAFLRGSEVTEGGENVPMENLLTVGQEVTVRVLKV-ERGKAYLTMK 359


>gi|18026317|gb|AAL55473.1|AF016851_1 hemin-binding protein [Prevotella intermedia]
          Length = 591

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G FV   G  DGL+HI+ LS  R+    +VV+    + V +LD
Sbjct: 210 LEKGQILEGVVKNITSYGVFVDL-GGVDGLIHITDLSWGRINDPHEVVELDQKINVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 269 FDEEKKRIALGLKQLAPHPW 288



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 96/258 (37%), Gaps = 26/258 (10%)

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKI 509
            +  G +K      ++ D+ G E  L      V              +  +  +  + + 
Sbjct: 127 AVIQGYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRN 186

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
             +S   ++ A  +A+R  +    E  ++L      +  +      + +    +  +I +
Sbjct: 187 VVVSHKALIEAELEAQRKEIISHLEKGQILEGVVKNITSYG-----VFVDLGGVDGLIHI 241

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKI 622
                 G +      V +D    V I      +   A            ++    +V   
Sbjct: 242 TDLS-WGRINDPHEVVELDQKINVVILDFDEEKKRIALGLKQLAPHPWDALDPNLKVGDH 300

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            KG+VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D 
Sbjct: 301 VKGKVVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKAGDEVEAVVLTLDRDE 360

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K+ L +K + ++  + I
Sbjct: 361 RKMSLGIKQLKEDPWEAI 378



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 373 DPWEAIEAKYPVGSKHVAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTQV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K ++ N  
Sbjct: 433 GADMDVIVLEIDKENRRLSLGHKQLETNPW 462



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD            E+  A +   +       +++ +G+V+ +      V+     DG++
Sbjct: 16  DDFENGVTVGGDKEELTKAYDNTLNKIQE---HQVVEGEVISIDKKEVVVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
             S+            +K GD V V + +  D  G++ LS K
Sbjct: 73  PASEFRY----NPE--LKVGDKVEVYVENQEDKSGQLILSHK 108


>gi|183221954|ref|YP_001839950.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912022|ref|YP_001963577.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776698|gb|ABZ94999.1| 30S Ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780376|gb|ABZ98674.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 566

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +         E   + +G V  + +FGAFV      +GL+H ++LS  ++     DV+K+
Sbjct: 275 DPWAWAKKELEKGMVVRGIVTSLTNFGAFVELKEGLEGLIHTTELSWAKKPPHPKDVLKK 334

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  V  ++LD D +  ++ L +K +  N  + +
Sbjct: 335 GQEVDSEILDIDFEARRLSLGLKQLLPNPWEAL 367



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
               ++        + +G+V  ++ FG FV      +GLVHIS++   R  K  D+ K G
Sbjct: 449 HPYEALRKKYPPGTLVEGRVKSIVSFGVFVEVEPGYEGLVHISEIPDGRNIKLEDLYKVG 508

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D+V   ++  + +  KI LS+K  D+   + 
Sbjct: 509 DSVRTVVVKIEPNNKKISLSIKDFDKAVERE 539



 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              +++       + +G++  +  +GAFV      +GL+HIS ++  E+     +++K+G
Sbjct: 363 PWEALSANVRAGNVLEGKITGITKYGAFVEVESGIEGLIHISDITWDEKEKNPLNLLKKG 422

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            +V  K+LD + D  +I   +K + ++ 
Sbjct: 423 QSVQYKILDVNLDAQRISCGLKQLSEHP 450



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E +   + +++     + S      E   E    +    +V     G+VVK+ +FG F+ 
Sbjct: 161 EFSFKIIELNEKTRTGVVSRKTLLDEINGEKWEELLGKVKVGDKVNGKVVKIANFGVFLS 220

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                 GL+  + +S ++ A        G  V V +L+ D +  K+ L +K + ++  
Sbjct: 221 VYDVV-GLLRQNDISYKKFAPFKQYFNIGAEVEVIVLEVDKENNKLSLGIKQLYEDPW 277


>gi|256752965|ref|ZP_05493790.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748148|gb|EEU61227.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 364

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +  A +  +     ++  +   +    L    F P  ++     D++   +G   
Sbjct: 93  LSREKIEKAYKNEEIIEGEVIEVVKGGVIAYSLGAKVFIPASQLELHYVDKLNEYLGKTL 152

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + +R I    G K+       +K+      E E A++ + S     +   I +G+V  ++
Sbjct: 153 R-LRIIEYIPGKKIVGSQKEVLKL------EREKAKKALLSN---LKEGDIVEGRVKNII 202

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           D GAFV   G  DG + +S++S ER+    +V+  GD V + +L  D++  KI LS++ V
Sbjct: 203 DKGAFVDIGGF-DGFIPLSEISWERIKNPREVLGMGDKVSIYILKVDEKNEKITLSLRKV 261

Query: 691 DQNTGKPI 698
             +  K +
Sbjct: 262 LPDPWKNV 269



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +++       ++ KG +  +  FG FV      +GLVH + L       +    K  
Sbjct: 264 DPWKNVETKYHEGEVLKGTITNITPFGVFVQLEPGIEGLVHKNNL-----ENSIKTYKIN 318

Query: 668 DTVWVKLLDFDDR-GKIKL 685
           D + V++L+ + +  KI L
Sbjct: 319 DIIGVEILNINQQDKKINL 337


>gi|118444683|ref|YP_877126.1| hypothetical protein NT01CX_1030 [Clostridium novyi NT]
 gi|118135139|gb|ABK62183.1| ribosomal protein S1 domain family protein [Clostridium novyi NT]
          Length = 135

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  
Sbjct: 4   KLGSILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISV 62

Query: 678 DDRGKIKLSMKV 689
           DD G++ LS+K 
Sbjct: 63  DDNGRLSLSIKQ 74


>gi|317132412|ref|YP_004091726.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470391|gb|ADU26995.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens
           harbinense YUAN-3]
          Length = 666

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 23/194 (11%)

Query: 527 GRLHILNEMSKVLSESRLQL-GEFTPRVEIMAIPPDQIRNVIGMGGKVI----------- 574
           GR   +  +  VL + R +L  +F    EI      +++++   G  V            
Sbjct: 461 GRKRAVGSIRAVLKDERKELAEKFWEEAEIGKQYTGKVKSLTSYGAFVDLGGVDGMIHVS 520

Query: 575 ---RGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYK 624
                 +      VN+ D   V I   +          ++             +V  I  
Sbjct: 521 ELSWSRIRHPSEVVNVGDTVNVTIKDLNPETKKVSLSYVDKGENPWDVFIREYQVGDIVD 580

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683
            ++V  M FGAF       DGL+HISQ++   VAK  D ++ G  V VK+++  +DR +I
Sbjct: 581 AKIVNFMTFGAFAQIIPGVDGLIHISQIADHHVAKPQDELELGQEVRVKIIEIEEDRKRI 640

Query: 684 KLSMKVVDQNTGKP 697
            LS++      G  
Sbjct: 641 SLSIREAVAEEGTD 654



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I+      + S      +  +E+     +  E+ K Y G+V  +  +GAFV   G  D
Sbjct: 456 IEINTGRKRAVGSIRAVLKDERKELAEKFWEEAEIGKQYTGKVKSLTSYGAFVDL-GGVD 514

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G++H+S+LS  R+   S+VV  GDTV V + D + +  K+ LS     +N  
Sbjct: 515 GMIHVSELSWSRIRHPSEVVNVGDTVNVTIKDLNPETKKVSLSYVDKGENPW 566



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           NID +     A     +  AA E          V++  +G VV +      V       G
Sbjct: 286 NIDSNENESNAEPEDIDFAAALEQ---SFKTLNVDERVRGVVVGLSPNEVQVDLGTKHAG 342

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ-NTGKPIV 699
            V +S+L+ +   K  D+VK GD + + +L  +D+ G + LS + +D   +   IV
Sbjct: 343 YVPLSELTDDSTVKPEDIVKVGDEIELVVLRVNDQDGTVMLSKRRIDALKSWDEIV 398


>gi|154492127|ref|ZP_02031753.1| hypothetical protein PARMER_01758 [Parabacteroides merdae ATCC
           43184]
 gi|154087352|gb|EDN86397.1| hypothetical protein PARMER_01758 [Parabacteroides merdae ATCC
           43184]
          Length = 742

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++               + +      +  +  ++  G V  + +FG FV      +
Sbjct: 631 LDIMEELDKPGRDPRQTIQVFSFDPTVKTIEDLKEGQVLPGIVTNITNFGCFVDVGIKEN 690

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GLVHIS+L+   ++  + VV     V VK+L  D  R +++LSMK +++ 
Sbjct: 691 GLVHISELADRFISDPTQVVSIHQHVKVKVLSVDLVRKRVQLSMKGIEET 740


>gi|330684832|gb|EGG96525.1| Tex-like protein N-terminal domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 716

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I   +I N + +G   +  I++       +  D+    I  S +  IE          D+
Sbjct: 591 IDTHEIANQLNIGKPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIE----------DL 640

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +L+
Sbjct: 641 SEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWILN 699

Query: 677 FDDRG-KIKLSM 687
            D +  K+ L+M
Sbjct: 700 IDKQKDKVSLTM 711


>gi|325660733|ref|ZP_08149361.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472807|gb|EGC76017.1| hypothetical protein HMPREF0490_00093 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 222

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           + E     ++ID      + S+     E              V  +  G V  +  +GAF
Sbjct: 78  LKEIKVRVIDIDPAENRLVLSAREILKEEQAAERAKKVQEIPVGSVLSGTVDSLQSYGAF 137

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +       GLVH+SQ+  +R+   +DV+K G+ V VK++   D GKI LSMK
Sbjct: 138 ILLENGLSGLVHVSQICEKRIKSPADVLKTGEEVQVKVIGIKD-GKISLSMK 188


>gi|253681324|ref|ZP_04862122.1| RNA binding S1 domain protein [Clostridium botulinum D str. 1873]
 gi|253562562|gb|EES92013.1| RNA binding S1 domain protein [Clostridium botulinum D str. 1873]
          Length = 136

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  
Sbjct: 4   KLGSILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISV 62

Query: 678 DDRGKIKLSMKVVDQN--TGKPI 698
           DD G++ LS+K    +  + KP+
Sbjct: 63  DDGGRLSLSIKQAMPSRKSSKPV 85


>gi|57867003|ref|YP_188621.1| 30S ribosomal protein S1 [Staphylococcus epidermidis RP62A]
 gi|251810898|ref|ZP_04825371.1| 30S ribosomal protein S1 [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876092|ref|ZP_06284959.1| 30S ribosomal protein S1 [Staphylococcus epidermidis SK135]
 gi|293366557|ref|ZP_06613234.1| 30S ribosomal protein S1 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674533|sp|Q5HP69|RS1_STAEQ RecName: Full=30S ribosomal protein S1
 gi|57637661|gb|AAW54449.1| ribosomal protein S1 [Staphylococcus epidermidis RP62A]
 gi|251805578|gb|EES58235.1| 30S ribosomal protein S1 [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295117|gb|EFA87644.1| 30S ribosomal protein S1 [Staphylococcus epidermidis SK135]
 gi|291319326|gb|EFE59695.1| 30S ribosomal protein S1 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737469|gb|EGG73723.1| putative ribosomal protein S1 [Staphylococcus epidermidis VCU028]
          Length = 392

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G 
Sbjct: 268 PFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 328 QVNVKILGIDEDNERISLSIKA 349



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E         SI D  
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQLENDAKKASILDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
               +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+         
Sbjct: 192 NEGDVIDGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSV 250

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             D  +I LS+K       + I
Sbjct: 251 EKDSERISLSIKDTLPTPFENI 272



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        +D G   LS + ++
Sbjct: 64  GDEVEAYVTKIEFDEENDTGAYILSKRQLE 93


>gi|300914328|ref|ZP_07131644.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307724436|ref|YP_003904187.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X513]
 gi|300889263|gb|EFK84409.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
 gi|307581497|gb|ADN54896.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X513]
          Length = 367

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +  A +  +     ++  +   +    L    F P  ++     D++   +G   
Sbjct: 93  LSREKIEKAYKNEEIIEGEVIEVVKGGVIAYSLGAKVFIPASQLELHYVDKLNEYLGKTL 152

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + +R I    G K+       +K+      E E A++ + S     +   I +G+V  ++
Sbjct: 153 R-LRIIEYIPGKKIVGSQKEVLKL------EREKAKKALLSN---LKEGDIVEGRVKNII 202

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           D GAFV   G  DG + +S++S ER+    +V+  GD V + +L  D++  KI LS++ V
Sbjct: 203 DKGAFVDIGGF-DGFIPLSEISWERIKNPREVLGMGDKVSIYILKVDEKNEKITLSLRKV 261

Query: 691 DQNTGKPI 698
             +  K +
Sbjct: 262 LPDPWKNV 269



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +++       ++ KG + K+  FG FV      +GLVH + L       +    K  
Sbjct: 264 DPWKNVETKYHEGEVLKGTITKITPFGVFVQLEPGIEGLVHKNNL-----ENSIKTYKIN 318

Query: 668 DTVWVKLLDFDDR-GKIKL 685
           D + V++L+ + +  KI L
Sbjct: 319 DIIGVEILNINQQDKKINL 337


>gi|167040244|ref|YP_001663229.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|166854484|gb|ABY92893.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
          Length = 365

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +  A +  +     ++  +   +    L    F P  ++     D++   +G   
Sbjct: 91  LSREKIEKAYKNEEIIEGEVIEVVKGGVIAYSLGAKVFIPASQLELHYVDKLNEYLGKTL 150

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + +R I    G K+       +K+      E E A++ + S     +   I +G+V  ++
Sbjct: 151 R-LRIIEYIPGKKIVGSQKEVLKL------EREKAKKALLSN---LKEGDIVEGRVKNII 200

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
           D GAFV   G  DG + +S++S ER+    +V+  GD V + +L  D++  KI LS++ V
Sbjct: 201 DKGAFVDIGGF-DGFIPLSEISWERIKNPREVLGMGDKVSIYILKVDEKNEKITLSLRKV 259

Query: 691 DQNTGKPI 698
             +  K +
Sbjct: 260 LPDPWKNV 267



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +++       ++ KG + K+  FG FV      +GLVH + L       +    K  
Sbjct: 262 DPWKNVETKYHEGEVLKGTITKITPFGVFVQLEPGIEGLVHKNNL-----ENSIKTYKIN 316

Query: 668 DTVWVKLLDFDDR-GKIKL 685
           D + V++L+ + +  KI L
Sbjct: 317 DIIGVEILNINQQDKKINL 335


>gi|313113528|ref|ZP_07799117.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624255|gb|EFQ07621.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 189

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +++G+V  V  FGAFV     R G+VHIS++S E V   + V+ +GD V V++++ 
Sbjct: 4   EVGNVFEGRVTGVKPFGAFVALPEGRVGMVHISEVSNEFVQDIAAVLHDGDIVKVQVINI 63

Query: 678 DDRGKIKLSMK 688
              GKI LS+K
Sbjct: 64  APDGKIALSIK 74


>gi|262193868|ref|YP_003265077.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
 gi|262077215|gb|ACY13184.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
          Length = 410

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 16/190 (8%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A          I       +      +  F P  ++     +     +G        
Sbjct: 116 LEQAHAHGLPVEGQITAVNKGGVEVQVGGVRGFCPISQLSDSFVEDAGEYVGKKLSFRIT 175

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            +E +  + N+       +  +  A     R  +R    +       +G V  +  FGAF
Sbjct: 176 RLETSRKQANLVLSRRALLEEAKAAIAAETRARLREGVTI-------RGTVTSMKPFGAF 228

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD--------RGKIKLSMK 688
           V   G  +G++H+S+L   RV    DV+  G  V V++L  ++        R +I LSMK
Sbjct: 229 VDI-GGLEGMIHVSELGFGRVDHPEDVLHVGQEVDVQVLRIEETRDKDAKRRERIALSMK 287

Query: 689 VVDQNTGKPI 698
            +  +    I
Sbjct: 288 ALADDPWDAI 297



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 560 PDQIRNVIGMGGKVIRGI--VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
            D   +V+ +G +V   +  +E+T       D    +    +L+    A +   +I    
Sbjct: 248 VDHPEDVLHVGQEVDVQVLRIEETR------DKDAKRRERIALSMKALADDPWDAIEQRY 301

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLD 676
                 KG+VV++  FGAF+      +GL HISQL +  R+    +V+K GD V V +L 
Sbjct: 302 GNGGQAKGRVVRLQPFGAFIEIEPGIEGLAHISQLGAGRRIQHPREVLKVGDEVEVNVLG 361

Query: 677 FD-DRGKIKLSM 687
            + +R +I LS+
Sbjct: 362 VERERRRISLSI 373


>gi|297588664|ref|ZP_06947307.1| RNA-binding protein [Finegoldia magna ATCC 53516]
 gi|297574037|gb|EFH92758.1| RNA-binding protein [Finegoldia magna ATCC 53516]
          Length = 140

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I +G+V  V  FGAFV       GLVHISQ+S + + K  DV+K  D V  K++  +
Sbjct: 5   VGDIVEGKVTGVTKFGAFVECEDGTKGLVHISQISNDYIEKVEDVLKVNDVVKCKVMSIE 64

Query: 679 DRGKIKLSMKV 689
           D  K+  S+K 
Sbjct: 65  D-NKVSFSIKE 74


>gi|22536507|ref|NP_687358.1| hypothetical protein SAG0324 [Streptococcus agalactiae 2603V/R]
 gi|76788688|ref|YP_329046.1| hypothetical protein SAK_0394 [Streptococcus agalactiae A909]
 gi|76797810|ref|ZP_00780075.1| general stress protein GSP13 [Streptococcus agalactiae 18RS21]
 gi|77405008|ref|ZP_00782109.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
 gi|77408085|ref|ZP_00784832.1| S1 RNA-binding domain protein [Streptococcus agalactiae COH1]
 gi|77410640|ref|ZP_00787000.1| S1 RNA-binding domain protein [Streptococcus agalactiae CJB111]
 gi|77413319|ref|ZP_00789514.1| S1 RNA-binding domain protein [Streptococcus agalactiae 515]
 gi|22533339|gb|AAM99230.1|AE014206_10 general stress protein, putative [Streptococcus agalactiae 2603V/R]
 gi|76563745|gb|ABA46329.1| general stress protein, putative [Streptococcus agalactiae A909]
 gi|76586824|gb|EAO63317.1| general stress protein GSP13 [Streptococcus agalactiae 18RS21]
 gi|77160633|gb|EAO71749.1| S1 RNA-binding domain protein [Streptococcus agalactiae 515]
 gi|77163355|gb|EAO74306.1| S1 RNA-binding domain protein [Streptococcus agalactiae CJB111]
 gi|77173269|gb|EAO76391.1| S1 RNA-binding domain protein [Streptococcus agalactiae COH1]
 gi|77176447|gb|EAO79215.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
          Length = 124

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  ++    KG V  +  +GAFV     R GL+HIS++ T  +    DV+  GD V+V++
Sbjct: 5   NKMKIGDKLKGTVTGIRPYGAFVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQV 64

Query: 675 LDFDD-RGKIKLSMKVVDQN 693
           +D D+   K  LS++ +++ 
Sbjct: 65  IDVDEFTQKASLSLRTLEEE 84


>gi|320160398|ref|YP_004173622.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
 gi|319994251|dbj|BAJ63022.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
          Length = 332

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 25/228 (10%)

Query: 479 ISGDEDHLGHMDFKVAGTDS-GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +  DE   G    K A   S GI+        GG++       L+  +  +L +      
Sbjct: 42  VLADEQAYGESLVKTASAKSSGIS--------GGVNWARARQYLENDEVVKLEVYGFNRG 93

Query: 538 VLSESRLQLGEFTPRVEIMAIP------PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
            L      +  F P   ++ +P        + +++    G+++   V      +  +   
Sbjct: 94  GLLVRGEDIQGFVPVSHLVEMPCVPADEEQRRQSLANYVGRILSLKV------IECEMQA 147

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
              + S   A     +      T  P   +I  G V  V DFGAFV   G  +GL+H+S+
Sbjct: 148 ERIVFSERAALAGEGKRRQLFSTLRP--GEIVNGTVTNVTDFGAFVDL-GGLEGLIHVSE 204

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           LS  RV   +D+++ G  V   +L    + G++ LS+K +  N  + +
Sbjct: 205 LSWGRVQHPTDILQVGVPVRALVLSVSAENGRVALSLKRLCPNPWETL 252



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TSDVVKEG 667
              ++  +     + + +V  +M FGAF       +GL+HIS +S     K     +K G
Sbjct: 248 PWETLPQIYRPGDVVEAEVTAIMRFGAFARLKEGVEGLIHISTMSLPDGEKDIEKFMKIG 307

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVD 691
             V V++L  D +R ++ L +  ++
Sbjct: 308 QKVQVRILHLDAERRRLGLGLVQIE 332


>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 278

 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 101/233 (43%), Gaps = 11/233 (4%)

Query: 284 SSWNEGEIVSVFEDIQ--AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLF 341
            + +E     V +D++     +R ++ + K+R DGR  E  R I  + G++ +  GS+  
Sbjct: 11  PTDSESYQHFVLKDVKDYESTLREILDNNKIRKDGRTFEDQRKIYMKTGVVTQAKGSAYL 70

Query: 342 IRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
              +T+ +V V     E  +       T   +    + F P    E          E   
Sbjct: 71  ELNNTKVLVSV----FEPREIPRLSEFTPNGEIYCEFKFAPFYGLERKG-HIMDLEEKDL 125

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
             + +R++ P + +     + + + + + ++DGS   A +  + LAL DAG+P+   +  
Sbjct: 126 SIILKRSLEPAVCRHEFPNFQVDVYALLLDNDGSCLSAAITAAGLALADAGIPMYDILTS 185

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           + +G+  D    +I  D + +E+      FK   ++ GI ++    ++  ++E
Sbjct: 186 VTLGIHND----MIFIDPNFEEEKFCKSFFKNKTSEIGIISLSYMPEMAQVTE 234



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 12/164 (7%)

Query: 12  AGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVG 71
             R + ++TG +  Q+ G+       T VL +V   R +    +F P    Y E  +A  
Sbjct: 50  DQRKIYMKTGVV-TQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIYCEFKFA-- 106

Query: 72  KIPGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKNET---QVIINVMQHDLESSPH 127
             P   L R+    +  E  +S ++ RS+ P      ++E    QV +  +  D + S  
Sbjct: 107 --PFYGLERKGHIMDLEEKDLSIILKRSLEPAV---CRHEFPNFQVDVYALLLDNDGSCL 161

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
             ++ AA  AL  +G+P    +    +   N    ++P  +E++
Sbjct: 162 SAAITAAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFEEEK 205


>gi|242371560|ref|ZP_04817134.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242350712|gb|EES42313.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 716

 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVH+S+LS + V    ++V  GD V V +LD D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMEIVSVGDIVDVWILDIDENKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|329735185|gb|EGG71477.1| putative ribosomal protein S1 [Staphylococcus epidermidis VCU045]
          Length = 392

 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    +  GLVHIS++  + +   ++V++ G 
Sbjct: 268 PFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 328 QVNVKILGIDEDNERISLSIKA 349



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E         SI D  
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQLENDAKKASILDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
               +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  G+         
Sbjct: 192 NEGDVIDGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSV 250

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             D  +I LS+K       + I
Sbjct: 251 EKDSERISLSIKDTLPTPFENI 272



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        +D G   LS + ++
Sbjct: 64  GDEVEAYVTKIEFDEENDTGAYILSKRQLE 93


>gi|332686755|ref|YP_004456529.1| transcription accessory protein, S1 RNA-binding domain
           [Melissococcus plutonius ATCC 35311]
 gi|332370764|dbj|BAK21720.1| transcription accessory protein, S1 RNA-binding domain
           [Melissococcus plutonius ATCC 35311]
          Length = 732

 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 15/131 (11%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDVP 617
            +++   + +G + ++ I++             ++       E+ A   R+ + S+ D+ 
Sbjct: 604 VEELSKTVDVGIETLKDIIKAL-----------IQPGRDMRDEMPAPLLRKDVLSMEDLK 652

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
              ++ +G V  V+DFGAFV     +DGLVHIS++ST+ V   +D+V  GD V V + + 
Sbjct: 653 PGMEL-EGTVRNVIDFGAFVDIGVKQDGLVHISKMSTKFVKHPTDIVSVGDIVTVWVEEV 711

Query: 678 D-DRGKIKLSM 687
           D  + +I L+M
Sbjct: 712 DLKKARISLTM 722


>gi|120602043|ref|YP_966443.1| RNA-binding S1 domain-containing protein [Desulfovibrio vulgaris
           DP4]
 gi|120562272|gb|ABM28016.1| RNA binding S1 domain protein [Desulfovibrio vulgaris DP4]
          Length = 723

 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A    A     +  D  +      G V  V  FGAFV     RDG
Sbjct: 614 DIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDG 673

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVH+SQL+   V   ++VV  G  V V++LD D  R +I L++K V Q 
Sbjct: 674 LVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLKGVPQQ 722


>gi|89053212|ref|YP_508663.1| 30S ribosomal protein S1 [Jannaschia sp. CCS1]
 gi|88862761|gb|ABD53638.1| SSU ribosomal protein S1P [Jannaschia sp. CCS1]
          Length = 558

 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E   +  G V  + ++GAFV   G  DGL+H++
Sbjct: 168 GNIVVSRRAILEESRAEQRAEVIGKLNEG-DVVDGVVKNITEYGAFVDL-GGVDGLLHVT 225

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV    +++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 226 DMAWRRVNDPKEILTIGETVKVQVIKVNKETHRISLGMKQLQDDPW 271



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++     ++ ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 269 DPWDAVAAKYALDTVHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVST 328

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 329 SQEVEVMVLEIDTVKRRVSLGLKQTMRNPWE 359



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 24/249 (9%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G+VK+  ++    D+ G +   H+  M ++       I  +   +K+  I    +     
Sbjct: 201 GVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNDPKEILTIGETVKVQVIK---VNKETH 257

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +   G   + ++    ++         T RV  +      +    G+ G V   + E + 
Sbjct: 258 RISLGMKQLQDDPWDAVAAKYALDTVHTGRVTNITDYGAFVELEAGVEGLV--HVSEMSW 315

Query: 583 AKVNIDDDGTVKIASSSLAEIEA---------------AREMIRSITDVPEVNKIYKGQV 627
            K N+     V  +      +                  R       +        +G+V
Sbjct: 316 TKKNVHPGKIVSTSQEVEVMVLEIDTVKRRVSLGLKQTMRNPWEVFAESHPEGTQVEGEV 375

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + +FG FV   G  DG+VH+S L+ E R        ++GD V   + + D D+ +I L
Sbjct: 376 KNITEFGLFVGLEGEIDGMVHLSDLTWEGRGEDMIGEFRKGDIVKAVVTEVDTDKERISL 435

Query: 686 SMKVVDQNT 694
           S+K VD + 
Sbjct: 436 SIKAVDGDP 444



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I   +V  + D G  V + G +   +  S LS +R  +  +  + GD + V++ +
Sbjct: 452 VKRGSIITVEVTAIEDGGIEVDYEGMK-SFIRRSDLSRDRSEQRPERFQVGDKLDVRVTN 510

Query: 677 FDDR-GKIKLSMKVVDQNTGKPIV 699
            D +  ++ LS+K  +    K  V
Sbjct: 511 IDAKSRRLGLSIKAREIAEEKEAV 534


>gi|156407958|ref|XP_001641624.1| predicted protein [Nematostella vectensis]
 gi|156228763|gb|EDO49561.1| predicted protein [Nematostella vectensis]
          Length = 392

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 631 MDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           M FG FV   G +   +GLVHISQL  E RVA  SDVV  G  V VK+L      +I LS
Sbjct: 1   MQFGCFVQLEGLKGRHEGLVHISQLRREGRVANVSDVVHRGQRVRVKVLSMAG-NRISLS 59

Query: 687 MKVVDQNTGKPI 698
           MK VDQ+TG+ +
Sbjct: 60  MKDVDQDTGEDL 71


>gi|138893885|ref|YP_001124338.1| S1 RNA-binding domain-containing protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265398|gb|ABO65593.1| S1 RNA binding domain protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 721

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+  +     +G+G   +R I++     + +  D+    +    + ++E  +  +     
Sbjct: 595 ALDIEATAAELGIGELTLRDIIDALCRPERDPRDELPKPLLRKDVLKMEDLKPGME---- 650

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                   +G V  V+DFGAFV     +DGLVHIS+LS + V    D+V  GD V V + 
Sbjct: 651 -------LEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVKVWVE 703

Query: 676 DFD-DRGKIKLSM 687
             D  +G+I LSM
Sbjct: 704 HVDVAKGRISLSM 716


>gi|108762762|ref|YP_631752.1| 30S ribosomal protein S1 family protein [Myxococcus xanthus DK
           1622]
 gi|108466642|gb|ABF91827.1| ribosomal protein S1 family protein [Myxococcus xanthus DK 1622]
          Length = 548

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           +V+ +G  V   I+     + N  D    K   +            ++++++ E +++ +
Sbjct: 285 DVVKVGDDVEVEILRMEAGQPNSPDKSKQKERITLSMRSRQEDPFQKALSEIKEGDRL-Q 343

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV++  FGAFV      DGLVHIS LS  R+A   DVVKEG+T+WV +   D    +I
Sbjct: 344 GKVVRLQQFGAFVELRPGVDGLVHISALSDRRIAHPRDVVKEGETIWVSVEKIDTQEKRI 403

Query: 684 KLSMKVVDQNTGKP 697
            L  ++ ++   +P
Sbjct: 404 GL-RRISEEEAQRP 416



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 23/189 (12%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A          +L+     +  +   +  F P  ++     ++    IG        
Sbjct: 152 LAEARASGMPVEGLVLSVNKGGVEVAIGDIRAFCPISQLDLRYVEKPDQFIG-------- 203

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
             E+   +V+   +  V ++  SL E E  +    +  ++ +  KI KG+V  V DFG F
Sbjct: 204 --EKLQFRVSEVRERNVVLSRRSLLEDEQRQLAAETRKNLAQG-KIVKGKVTGVRDFGVF 260

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-----------DRGKIKL 685
           V   G  +G++ +S+LS  RV   SDVVK GD V V++L  +            + +I L
Sbjct: 261 VDL-GGVEGMIPVSELSYTRVGHPSDVVKVGDDVEVEILRMEAGQPNSPDKSKQKERITL 319

Query: 686 SMKVVDQNT 694
           SM+   ++ 
Sbjct: 320 SMRSRQEDP 328



 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           ++  +G F+ F G + GL+  S+  TER          G  V V +LD D  GKI+LS
Sbjct: 450 RIEPYGVFLAFPGGK-GLLPASETGTERGTDLRKHYSLGQEVKVAILDIDASGKIRLS 506


>gi|288574247|ref|ZP_06392604.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569988|gb|EFC91545.1| RNA binding S1 domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 717

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  V DFGAFV     +DGLVH+S+LS   V       K G TV V +LD D  
Sbjct: 639 MVLPGIVTNVTDFGAFVDVGVHQDGLVHVSRLSDRFVKDPHQAAKPGQTVEVAVLDVDLK 698

Query: 680 RGKIKLSMKVVD 691
           R ++ LSMK  D
Sbjct: 699 RKRLSLSMKKKD 710


>gi|159043574|ref|YP_001532368.1| 30S ribosomal protein S1 [Dinoroseobacter shibae DFL 12]
 gi|157911334|gb|ABV92767.1| ribosomal protein S1 [Dinoroseobacter shibae DFL 12]
          Length = 558

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    I  + E + +  G V  + ++GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEVIGKLNEGDAV-DGVVENITEYGAFVDL-GGVDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            ++  RV   S+++  G+TV V+++  + +  +I L MK +  +  
Sbjct: 227 DMAWRRVNHPSEILAIGETVKVQVIKINKETHRISLGMKQLQDDPW 272



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     ++ ++ G+V  + D+GAFV      +GLVH+S++S  ++      +V  
Sbjct: 270 DPWNLVEGKYPLDSVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 329

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
              V V +L+ D  + ++ L +K   +N  +
Sbjct: 330 SQEVEVMVLEIDTVKRRVSLGLKQTMRNPWE 360



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R       +        +G+V  + +FG F+      DG+VH+S LS  +R  +     +
Sbjct: 356 RNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLENDIDGMVHLSDLSWDQRGEEAIQNYR 415

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +GD V   + + D ++ +I LS+K +
Sbjct: 416 KGDVVQAVVSEVDVEKERISLSVKAL 441



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I   +V  + D G  V + G +   +  S LS +R  +  +    G
Sbjct: 444 DKFAEAVGGVKRGSIITVEVTAIEDGGIEVEYEGMK-SFIRRSDLSRDRAEQRPERFGVG 502

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           D V V++ + D++  ++ LS+K  +    K  V
Sbjct: 503 DKVDVRVTNVDNKTRRLGLSIKAREIAEEKEAV 535


>gi|168187048|ref|ZP_02621683.1| ribosomal protein S1 domain family protein [Clostridium botulinum C
           str. Eklund]
 gi|169295087|gb|EDS77220.1| ribosomal protein S1 domain family protein [Clostridium botulinum C
           str. Eklund]
          Length = 135

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G VV +  FGAF+   G + GLVHIS+++   V    + +KE D V VK++  
Sbjct: 4   KLGSILEGTVVNITKFGAFIEVEG-KTGLVHISEVADTYVKDIREHIKEQDKVKVKVISV 62

Query: 678 DDRGKIKLSMKV 689
           DD G++ LS+K 
Sbjct: 63  DDNGRLSLSIKQ 74


>gi|325106225|ref|YP_004275879.1| Tex-like protein [Pedobacter saltans DSM 12145]
 gi|324975073|gb|ADY54057.1| Tex-like protein [Pedobacter saltans DSM 12145]
          Length = 754

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV     +DGLVH+SQ+S   ++  ++VVK    V V + + D  R +I
Sbjct: 643 GIVTNITNFGAFVDIGVHQDGLVHLSQMSDRFISNPNEVVKVQQRVEVTVTEIDTARNRI 702

Query: 684 KLSMK 688
            LSMK
Sbjct: 703 GLSMK 707


>gi|256828106|ref|YP_003156834.1| RNA binding S1 domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577282|gb|ACU88418.1| RNA binding S1 domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 710

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K         +  R                 G V  V  FGAFV     +DGLVHIS L+
Sbjct: 612 KPGRDPRPAFQVFRFADVHDMADLHPGMTVPGIVTNVTRFGAFVDVGVHQDGLVHISNLA 671

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
              V+   +VV+ G  V V +L+ D  R +I LSM+
Sbjct: 672 DRYVSDPGEVVRAGQQVQVTVLEVDAKRRRIGLSMR 707


>gi|79325369|ref|NP_001031743.1| emb2726 (embryo defective 2726); RNA binding / translation
           elongation factor [Arabidopsis thaliana]
 gi|332660181|gb|AEE85581.1| elongation factor Ts family protein [Arabidopsis thaliana]
          Length = 709

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTV-----KIASSSLAEIEAAREMIRSITDVPEVNKI-- 622
           G  V+  + EQ    V  +D  TV        + +      AR   +S     +  ++  
Sbjct: 76  GTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVP 135

Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
              + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  +I L+M+  D    +
Sbjct: 196 ESKRISLTMRENDDPPKR 213



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---SDVVKEGDTVWVKLLDF 677
           ++  G V  +   GAF+      +G +  ++ + + +         ++ G  V V++L  
Sbjct: 249 QMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEADDGIGSMMMGGSSLQAGQEVKVRVLRI 308

Query: 678 DDRGKIKLSMKVVDQNTGK 696
             RG++ L+MK  +++ GK
Sbjct: 309 -ARGRVTLTMK--EEDDGK 324


>gi|53794021|gb|AAU93601.1| chloroplast polyprotein of elongation factor Ts precursor
           [Arabidopsis thaliana]
          Length = 710

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTV-----KIASSSLAEIEAAREMIRSITDVPEVNKI-- 622
           G  V+  + EQ    V  +D  TV        + +      AR   +S     +  ++  
Sbjct: 76  GTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVP 135

Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
              + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  +I L+M+  D    +
Sbjct: 196 ESKRISLTMRENDDPPKR 213



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---SDVVKEGDTVWVKLLDF 677
           ++  G V  +   GAF+      +G +  ++ + + +         ++ G  V V++L  
Sbjct: 249 QMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEADDGIGSMMMGGSSLQAGQEVKVRVLRI 308

Query: 678 DDRGKIKLSMKVVDQNTGK 696
             RG++ L+MK  +++ GK
Sbjct: 309 -ARGRVTLTMK--EEDDGK 324


>gi|147802809|emb|CAN68483.1| hypothetical protein VITISV_006784 [Vitis vinifera]
          Length = 418

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 27/151 (17%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P +    I  G      I      KV + D+   K+  S               +    +
Sbjct: 145 PHKTIQEIAKG-----LIGSLISVKVILADEEKRKLIFSEKEAA------WLKFSKQINI 193

Query: 620 NKIYKGQVVKVMDFGAFVHF---------------CGARDGLVHISQLSTERVAKTSDVV 664
             I++  V  V D+GAFVH                     GLVH+S++S + V    DV+
Sbjct: 194 GDIFEAMVGSVEDYGAFVHLRFPDGTSFSVTYITGLYHLTGLVHVSEVSWDLVQDVRDVL 253

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            EGD V VK++  D  + +I LS+K ++++ 
Sbjct: 254 NEGDEVRVKIVKVDRVKSRITLSIKQLEEDP 284


>gi|56807869|ref|ZP_00365704.1| COG2183: Transcriptional accessory protein [Streptococcus pyogenes
           M49 591]
          Length = 139

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   Q+   + +G + ++ I+        ++ DD    I    + +++           
Sbjct: 11  AVQVPQMAETLAIGQETLKDIIADLLKPGRDLRDDFEAPILRQDILDLK----------- 59

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 60  DLEIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 119

Query: 676 DFD-DRGKIKLSM 687
             D DR K+ LS+
Sbjct: 120 KIDLDRHKVNLSL 132


>gi|283850541|ref|ZP_06367829.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
 gi|283574112|gb|EFC22084.1| RNA binding S1 domain protein [Desulfovibrio sp. FW1012B]
          Length = 714

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     RDG+VH+SQL+   V+  ++VV     VWV++++ D +RG+I
Sbjct: 641 GLVTNVTRFGAFVDIGVHRDGMVHVSQLADRFVSDPAEVVSVSREVWVRVVEIDLERGRI 700

Query: 684 KLSMKVV 690
            LS++ +
Sbjct: 701 GLSLRGL 707


>gi|25010386|ref|NP_734781.1| hypothetical protein gbs0312 [Streptococcus agalactiae NEM316]
 gi|23094738|emb|CAD45957.1| unknown [Streptococcus agalactiae NEM316]
 gi|319744294|gb|EFV96658.1| S1 RNA binding domain protein [Streptococcus agalactiae ATCC 13813]
          Length = 118

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG V  +  +GAFV     R GL+HIS++ T  +    DV+  GD V+V+++D
Sbjct: 1   MKIGDKLKGTVTGIRPYGAFVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+   K  LS++ +++ 
Sbjct: 61  VDEFTQKASLSLRTLEEE 78


>gi|332299016|ref|YP_004440938.1| Tex-like protein [Treponema brennaborense DSM 12168]
 gi|332182119|gb|AEE17807.1| Tex-like protein [Treponema brennaborense DSM 12168]
          Length = 813

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 15/221 (6%)

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           + +L  +SG    L             IT+    MK+GG+            K       
Sbjct: 505 YSLLKYVSGINGSLAKKIVAYRDEHGKITSRDELMKVGGMGAKTFEQCAGFLKIPESADP 564

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI----GMGGKVIRGIVEQTGAKVNID 588
            + + V  E+     E  P V+  +  P  ++  +     +G + +  I+E+   K N D
Sbjct: 565 LDNTWVHPENYQAAREVLPLVQQKSDIPGAVKKELKEKYSLGDQTVSDIIEEL-QKPNRD 623

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
                         +        +  D+ E  K+  G++  V+DFGAFV        L+H
Sbjct: 624 PRDGYPKPIMQKGVV--------TFEDLKEGMKV-TGKIKNVVDFGAFVDLGIKETALLH 674

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           IS+LS   V    +V+K GD     ++  D DR +I LS+K
Sbjct: 675 ISELSDSFVTDPMEVLKVGDIKECTIIGLDADRRRISLSLK 715


>gi|225445166|ref|XP_002280712.1| PREDICTED: similar to Os12g0541500 [Vitis vinifera]
          Length = 1135

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            +   + +I  DG V  +    A    + EM     +       + G+V  +  FGAF+ 
Sbjct: 107 AEASEEPSIKSDGGVTSSQPKRARPRKS-EMPPVKNEELVPGATFTGKVKSIQPFGAFID 165

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           F    DGLVH+S+LS   V    ++V  G  V V+L++ + + G+I L+M+  D  T
Sbjct: 166 FGAFTDGLVHVSRLSDSYVKDVGNIVSIGQEVKVRLVEANTETGRISLTMRDSDDPT 222



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT--SDVVKEGDTVWVKLLDFDDR 680
            +G V  +   GAF+      +G +  S+ + E          ++ G  V V++L    R
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVLRI-SR 324

Query: 681 GKIKLSMKVVDQNTGK 696
           G++ L+MK  +++  K
Sbjct: 325 GQVTLTMKK-EEDAEK 339


>gi|313159683|gb|EFR59040.1| Tex-like protein N-terminal domain protein [Alistipes sp. HGB5]
          Length = 705

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
               G V  +  FGAFV     +DGLVHISQL+   VA  +DVV  G  V V++   D  
Sbjct: 634 MTLPGIVTNITAFGAFVDIGIKQDGLVHISQLADRYVASPADVVHLGQHVEVRVTGIDTV 693

Query: 680 RGKIKLSMK 688
           R +I LSM+
Sbjct: 694 RNRIALSMR 702


>gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium
           HF0200_09I09]
          Length = 677

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 6/207 (2%)

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           A TD G   + +D   G     I+    +  +     I       L  +   +  F P  
Sbjct: 161 AETDEGQVLLSIDRARGEQGWRILQDRFENGEIFEAEITGFNKGGLLANVEGVNAFIPMS 220

Query: 554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
           +++   P       G      +   E     + I+      I S   A  E   E    +
Sbjct: 221 QVVGAKPG----TDGAQSLSDQVGRELRMKVIEINRRRNRAILSERAAMQEWRAEQKERL 276

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
                  ++ KG V  + +FG FV   GA DGL H+S+LS +R A    + + G  + V 
Sbjct: 277 LGELAEGEVRKGTVTSIRNFGVFVDLGGA-DGLAHLSELSWDRNADPEQLFQVGQDIDVY 335

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           ++  D D  KI LS++       + ++
Sbjct: 336 IMRIDRDSKKIALSVRRAAPEQWQDLI 362



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            AA E  + +    EV  +  G V KV+ FGAF    G  +GL H+S+L   R+    ++
Sbjct: 352 RAAPEQWQDLISQYEVGDVVPGIVTKVVAFGAFTRLPGPVEGLAHVSELVDRRINSPEEI 411

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           + EGD V +K++  + DR ++ LS++   Q  
Sbjct: 412 LIEGDVVPLKIVRIEHDRHRLGLSLREARQEA 443


>gi|46580651|ref|YP_011459.1| S1 RNA-binding domain-containing protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450070|gb|AAS96719.1| S1 RNA binding domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234383|gb|ADP87237.1| Tex-like protein protein-like protein [Desulfovibrio vulgaris RCH1]
          Length = 723

 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A    A     +  D  +      G V  V  FGAFV     RDG
Sbjct: 614 DIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDG 673

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           LVH+SQL+   V   ++VV  G  V V++LD D  R +I L++K V Q 
Sbjct: 674 LVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLKGVPQQ 722


>gi|312879621|ref|ZP_07739421.1| RNA binding S1 domain protein [Aminomonas paucivorans DSM 12260]
 gi|310782912|gb|EFQ23310.1| RNA binding S1 domain protein [Aminomonas paucivorans DSM 12260]
          Length = 135

 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E     T    V ++  G V  +  +GAF+     +  +VHIS+L+   + K  DV++  
Sbjct: 3   EEKTVTTPAVSVGEVVSGTVEHIAPYGAFIRLETGQKAMVHISELAHSYIKKVEDVLELQ 62

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
             V  K++  D+RG+I LS+K +     +
Sbjct: 63  QKVTAKVIKIDERGRIDLSIKALQPREPR 91


>gi|171057652|ref|YP_001790001.1| 30S ribosomal protein S1 [Leptothrix cholodnii SP-6]
 gi|170775097|gb|ACB33236.1| ribosomal protein S1 [Leptothrix cholodnii SP-6]
          Length = 562

 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           ++++    GK +   V +   K N      V ++  ++ E     E  + +  + E    
Sbjct: 140 VKDMSPYEGKTMEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLLETLREGA-F 193

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  + ++GAFV   G  DGL+HI+ ++  RV   S+VV  G  +  K+L FD ++ 
Sbjct: 194 VNGVVKNITEYGAFVDL-GGIDGLLHITDMAWRRVRHPSEVVTVGQELTAKVLKFDAEKN 252

Query: 682 KIKLSMKVVDQNTG 695
           ++ L +K +  +  
Sbjct: 253 RVSLGLKQMGDDPW 266



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           P   +I+ G+V  + D+GAFV      +GLVH+S++    +    S +V  GD V V +L
Sbjct: 274 PSGTRIF-GKVTNIADYGAFVEIEPGIEGLVHVSEMDWTNKNVAPSKIVALGDEVEVMVL 332

Query: 676 DFD-DRGKIKLSMKVVDQNTGKP 697
           + D D+ +I L MK   QN    
Sbjct: 333 EIDEDKRRISLGMKQCKQNPWDE 355



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 42/262 (16%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
               G+VK+  ++    D+ G +   H+  M ++     S +  +  +     ++  ++ 
Sbjct: 192 AFVNGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVTVGQE-----LTAKVLK 246

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
              ++ +         + ++  +  + +    P    +      I +      I  G + 
Sbjct: 247 FDAEKNRVS-----LGLKQMGDDPWIGVSRRYPSGTRIFGKVTNIADYGAFVEIEPGIEG 301

Query: 574 IRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           +  + E                        + ID+D           +    +       
Sbjct: 302 LVHVSEMDWTNKNVAPSKIVALGDEVEVMVLEIDEDKRRISLGMKQCK----QNPWDEFA 357

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVK 673
              +     KG V  + DFG FV      DGLVH+S LS     + +    K+G  V   
Sbjct: 358 QNFKRGDRVKGPVKSITDFGVFVGLAAGIDGLVHLSDLSWNETGEAAVRNFKKGQDVEAI 417

Query: 674 LLDFD-DRGKIKLSMKVVDQNT 694
           +L  D +R +I L +K +D + 
Sbjct: 418 VLGIDVERERISLGIKQLDTDP 439



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T + +      G+V  V   GA +       G +  S+++ ERV    +V+KEG
Sbjct: 438 DPFTNYTTLNDRGATVTGKVKTVDARGAEIQLNEEVTGYLRASEIARERVEDARNVLKEG 497

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V   +++ D + + I+LS+K  D
Sbjct: 498 DEVTTMIINVDRKLRSIQLSIKAKD 522


>gi|51246699|ref|YP_066583.1| 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
 gi|50877736|emb|CAG37576.1| related to 30S ribosomal protein S1 [Desulfotalea psychrophila
           LSv54]
          Length = 396

 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I++ G   + S+   E     EM   +       +  +G +  + DFGAFV   GA DGL
Sbjct: 160 IEESGRNIVVSARALEEAKRAEMRDELVATLAEGQTVEGVITSIRDFGAFVDI-GAIDGL 218

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + IS++   RV +  +    G  V   +   D ++ +I LS K    +  
Sbjct: 219 IPISEIGWSRVERVEEYFAVGQKVQAVVKSIDWEKDRISLSYKDTLTDPW 268



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +             I  G+VV++  FGAFV+     DGL+HIS+L S  R+    + V+E
Sbjct: 266 DPWIEAAKELVPGTILTGKVVRLAQFGAFVNIAEGIDGLIHISRLGSGRRINHPREAVEE 325

Query: 667 GDTVWVKLLDFD-DRGKIKL 685
           G  + VK+   D D  +I L
Sbjct: 326 GQEIEVKVESVDSDSKRISL 345


>gi|239907284|ref|YP_002954025.1| putative 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
 gi|239797150|dbj|BAH76139.1| putative 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
          Length = 492

 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E    KV   D         SL+  +A  +   S+ D   V    +G+VV++ DFGAFV 
Sbjct: 251 EAVTVKVLAFDRDKKGRPRISLSIKQAGADPWDSVGDQFNVGDKVEGKVVRLADFGAFVE 310

Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                +GL+H+S++S   RVAK  DVV  GD V V + D D  + +I LS+K    +  +
Sbjct: 311 IAPGIEGLIHVSEMSHVRRVAKPGDVVAAGDAVTVSIKDIDLSKRRIGLSLKEAAGDPWQ 370



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +  + DG   + S      +A  E      +  +   +    + +++ FGAF       +
Sbjct: 168 ITFERDGKNIVVSRRKLLEQARVESELRFMETVQPGDVVPAVISRLVAFGAFAEVAPGLE 227

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLL--DFDDRG--KIKLSMKVVDQNTGKPI 698
           GL+H+S+LS  R  K  D V  G+ V VK+L  D D +G  +I LS+K    +    +
Sbjct: 228 GLIHLSELSWSRAEKAEDAVTPGEAVTVKVLAFDRDKKGRPRISLSIKQAGADPWDSV 285



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 11/240 (4%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           IS+ VA  A   V  G + +I              D    G    +  +  D    G   
Sbjct: 210 ISRLVAFGAFAEVAPGLEGLIHLSELSWSRAEKAEDAVTPGEAVTVKVLAFDRDKKGRPR 269

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
             + ++++QA       + +   V  +   ++         + I P  I  +I +     
Sbjct: 270 --ISLSIKQAGADPWDSVGDQFNVGDKVEGKVVRLADFGAFVEIAPG-IEGLIHVSEMSH 326

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIE-------AAREMIRSITDVPEVNKIYKGQV 627
              V + G  V   D  TV I    L++         AA +  + + +   +     G V
Sbjct: 327 VRRVAKPGDVVAAGDAVTVSIKDIDLSKRRIGLSLKEAAGDPWQGVAETFPIGATVTGTV 386

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
                FG FV+      GL+  S+L      +T + +K GD   V + + D D+ K+ LS
Sbjct: 387 ENRQQFGIFVNLAPGVTGLLPASKLRDALEPQTYERLKIGDETTVIVSEIDTDKRKMTLS 446


>gi|294055034|ref|YP_003548692.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
 gi|293614367|gb|ADE54522.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
          Length = 552

 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEG 667
                     V    +G+V  +  +GAFV      DG+VH+S +S  R V   S+VVK+G
Sbjct: 348 PWDMARHNYPVGARVRGKVRNLTTYGAFVELEEGIDGMVHVSDMSWTRKVNHPSEVVKKG 407

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D V   +LD D D  +I L MK +  +    I
Sbjct: 408 DEVDAIVLDVDADSQRISLGMKQLAVDPWDEI 439



 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +    I    ++  + KG+V K+  +GAFV      DGLVHISQ+S ERV K  DV+ 
Sbjct: 432 AVDPWDEIETHFKIGDMVKGKVSKITSYGAFVELDNDIDGLVHISQISEERVEKIKDVLD 491

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            G  V  +++  D D  +I LS+K  +
Sbjct: 492 SGAEVTARVIKIDKDERRIGLSIKAAN 518



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
           A      I +   ++    G+VV ++ +GAFV      +GLVH+++LS  +R++K  +V+
Sbjct: 258 ADNPWERIEEKYPISSTITGKVVNLVPYGAFVEIEEGVEGLVHVTELSWTKRISKPGEVL 317

Query: 665 KEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           + G+ +   +L    +  KI L ++ +D N  
Sbjct: 318 RIGEEIQAVVLGIQKEEQKISLGVRQLDANPW 349



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +I   PP  +   +G          +    K+N++    V      + E   
Sbjct: 122 VDSFLPASQIDIQPPKNLDQYVGQT-------YDFKVVKINLERKNIVVSRRELIEEQR- 173

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             E  R++ +  +     +GQV  + D+GAFV      DGL+HI+ +S  R+   S++VK
Sbjct: 174 -MEKRRALLEEVKPGDKRRGQVKNITDYGAFVDL-DGLDGLLHITDMSWGRIQHPSEMVK 231

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           +G+ + V +++ D DR ++ L +K +  N  + I
Sbjct: 232 QGEEIEVVIIEIDRDRERVSLGLKQLADNPWERI 265


>gi|307565521|ref|ZP_07628002.1| 30S ribosomal protein S1 [Prevotella amnii CRIS 21A-A]
 gi|307345775|gb|EFN91131.1| 30S ribosomal protein S1 [Prevotella amnii CRIS 21A-A]
          Length = 593

 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV   + + V +LD
Sbjct: 210 LEKGQILEGTVKNITTYGVFIDL-GGVDGLIHITDLSWGRVSDPHEVVTLDEKIKVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 269 FDEEKKRIALGLKQLTPHPW 288



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + I    +  +I +    
Sbjct: 191 HKALIEAELEAQRKEIISHLEKGQILEGTVKNITTYG-----VFIDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D+   V I      +   A            ++    +V    KG+
Sbjct: 246 -WGRVSDPHEVVTLDEKIKVVILDFDEEKKRIALGLKQLTPHPWDALDADLKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D  K+ 
Sbjct: 305 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 365 LGIKQLKADPWESI 378



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   SI D   +   +  +V    +FG FV      DGL+HIS LS  ++V   S+   +
Sbjct: 373 DPWESIEDKYPIGSKHIAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTHQ 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D +  ++ L  K ++ N    
Sbjct: 433 GAEIDVVVLEIDKENRRLSLGHKQLEPNPWDE 464



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  + N++ +G V+ V      V+     DG++  S+            +K GD V V +
Sbjct: 40  NKIQENQVVEGTVISVDKKEVVVNIGYKSDGIIPASEFRY----NPE--LKAGDKVEVFV 93

Query: 675 LDF-DDRGKIKLSMKVV-DQNTGKPI 698
               D RG++ LS K    Q + + I
Sbjct: 94  ESQEDKRGQLVLSHKKARLQKSWENI 119


>gi|30250132|ref|NP_842202.1| S1 RNA-binding domain-containing protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30139239|emb|CAD86109.1| S1 RNA binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 801

 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I SITD+     I +G V  V  FGAF+     +DGLVH+S L+ + +     +VK 
Sbjct: 664 QEGIESITDLQPG-MILEGVVTNVAAFGAFIDIGVHQDGLVHVSALANKFIKDPHQIVKP 722

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           G  V V++L  D  R +I L+M++ D
Sbjct: 723 GQVVKVRVLTVDAVRQRISLTMRIDD 748


>gi|257898342|ref|ZP_05677995.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|257836254|gb|EEV61328.1| RNA binding protein S1 [Enterococcus faecium Com15]
          Length = 726

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  ++   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKDILMTVHLSEKELGTEEAVEKLTRLSAEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  K       E+ A   R  + S+ D+    ++  G V   +DFGAFV     +DGLVH
Sbjct: 622 GLTKPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNAIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V V +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTVWIEQVDTKKGRISLTM 720


>gi|226323894|ref|ZP_03799412.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758]
 gi|225207443|gb|EEG89797.1| hypothetical protein COPCOM_01669 [Coprococcus comes ATCC 27758]
          Length = 253

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  + KG V  +  +GAFV       GLVHISQ+ST+R+     V+  GD V VK++ 
Sbjct: 120 VQVGSVVKGTVESLQSYGAFVRLENGLSGLVHISQISTQRIKSADQVLHVGDEVDVKVIG 179

Query: 677 FDDRGKIKLSMKVV 690
             D GKI LS+K +
Sbjct: 180 IKD-GKISLSIKAL 192


>gi|257871109|ref|ZP_05650762.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
 gi|257805273|gb|EEV34095.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
          Length = 126

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  I  G V  +  +GAFV       GL+H+S++ +       DV++ G  V V++
Sbjct: 1   MDYQIGTIIDGTVTGIQPYGAFVSLDKETQGLIHVSEIQSGYTKNIHDVLQVGQEVRVQI 60

Query: 675 LDFDD-RGKIKLSMKVVDQ 692
           +D D+   KI LS + ++Q
Sbjct: 61  IDIDEYSQKISLSRRTLEQ 79


>gi|78222320|ref|YP_384067.1| 30S ribosomal protein S1 [Geobacter metallireducens GS-15]
 gi|78193575|gb|ABB31342.1| SSU ribosomal protein S1P [Geobacter metallireducens GS-15]
          Length = 401

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           + G   + S      E  R    ++ +V        G V ++ DFGAFV   G  DGL+ 
Sbjct: 172 ERGRNIVLSHRQILEEEQRVKREALKEVLLEGMTVTGTVTRLADFGAFVDL-GGVDGLIP 230

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           +S++   RV    DV+  G+ V V +   D + GKI LS+K    +  
Sbjct: 231 VSEVGWTRVKHVRDVLSVGEQVSVVIKKIDWEAGKISLSLKDTLADPW 278



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ +       + G V ++  FGAFV      DGL+HIS+L   +R+   SDV+KE
Sbjct: 276 DPWTTVAEQFPEGSYHTGTVARLAAFGAFVTLAPGIDGLIHISKLGKGKRINHPSDVLKE 335

Query: 667 GDTVWVKLLDFDDRGKIKLSM 687
           G+TV VK+   D   + +LS+
Sbjct: 336 GETVEVKVDGVDREAR-RLSL 355


>gi|332522618|ref|ZP_08398870.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313882|gb|EGJ26867.1| Tex-like protein N-terminal domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 710

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 13/138 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I    +   +G+G + ++ I+        ++ DD    +           R+ I  + D+
Sbjct: 583 IDIKTMSQDLGLGFETLKDIISDLLKPGRDLRDDFETPVL----------RQDILDLKDL 632

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
               K+ +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD V V +  
Sbjct: 633 AIGQKL-EGTVRNVVDFGAFVDIGVHEDGLIHISEMSQTFVNHPSQVLSVGDLVTVWVSK 691

Query: 677 FD-DRGKIKLSMKVVDQN 693
            D  R K+ LS+   +++
Sbjct: 692 IDLARHKVNLSLIAPNES 709


>gi|228989421|ref|ZP_04149410.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus pseudomycoides DSM 12442]
 gi|228770368|gb|EEM18943.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus pseudomycoides DSM 12442]
          Length = 722

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G
Sbjct: 653 LEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDVDMKKG 712

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 713 RVALAM 718


>gi|190571429|ref|YP_001975787.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018827|ref|ZP_03334635.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357701|emb|CAQ55150.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995778|gb|EEB56418.1| ribosomal protein S1 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 550

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   QI++   +     + IV +   K      G + ++   + E   A E I+ +  +
Sbjct: 162 HVDLKQIKDANHLIETEQKFIVLKMDKK-----QGNIVVSRKLVLEKLHAGEKIKFLESL 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            E   + +G++  +  +GAFV        G  DGL+HI+ +S   V+  S +   G  + 
Sbjct: 217 NEG-DVVEGKIKSITHYGAFVGIHESDTVGVIDGLLHITDISWSNVSHPSAIFSYGQHIK 275

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            K++  D + GKI L +K +  N  + +
Sbjct: 276 TKIIKIDRENGKISLGVKQLGDNPWQDL 303



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             + +     +N ++KG V  + D G  V       GLVH S+++  +     S  V  G
Sbjct: 299 PWQDLESKCPINSVHKGCVTGIKDCGFIVEIKPGIAGLVHSSEITWSKSNLPISSFVTIG 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V VK+L  D  + K+ LS K   +N  +
Sbjct: 359 QEVDVKILGIDIIKNKMSLSTKRCVENPWQ 388


>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
           pisum]
          Length = 279

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 9/182 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K VR DGRD    R++  + G++ +  GS+    G T+ I  V    +E     + +   
Sbjct: 38  KDVRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSV-FDPKE---VPNKVEYA 93

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +  +    + F   +  +       S  E       RRA+ P + +     + + I   +
Sbjct: 94  KTGELQCEFKFATFSCRQRRTYTRDSE-ERQLCNELRRALEPAICRGEFANFEIHINVLV 152

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
            E+DGS   A +  + LALMD  +P+   +   ++G+ K+     IL D + DE+ L   
Sbjct: 153 LENDGSVLAAAITAAGLALMDGCIPMYDVIVATSLGIYKNK----ILVDPTYDEETLCSS 208

Query: 490 DF 491
             
Sbjct: 209 TI 210



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT-----Y 68
           R L ++TG I  Q+ G+     G T ++ +V   +         P  V Y +       +
Sbjct: 51  RNLCIKTG-IVTQAKGSAYLECGSTKLICSVFDPKE-------VPNKVEYAKTGELQCEF 102

Query: 69  AVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
                     R  +R +E   L + +  R++ P   +      ++ INV+  + + S   
Sbjct: 103 KFATFSCRQRRTYTRDSEERQLCNEL-RRALEPAICRGEFANFEIHINVLVLENDGSVLA 161

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
            ++ AA  ALM   +P    +V   +     + +++P  DE+
Sbjct: 162 AAITAAGLALMDGCIPMYDVIVATSLGIYKNKILVDPTYDEE 203


>gi|288799972|ref|ZP_06405431.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333220|gb|EFC71699.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039]
          Length = 591

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 25/230 (10%)

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K GD   +  ++  D+     +  K A  +        D     + +  +V    + + 
Sbjct: 83  LKVGDKVEVYVEMQEDKKGQLELSHKKARLNK-----SWDRVNEALDKEEIVQGYIKCRT 137

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               I++            +  F P      I    IR+     GK +   +     K+N
Sbjct: 138 KGGMIVDVFG---------IEAFLPGS---QIDVHPIRDYDVFVGKTMEFKI----VKIN 181

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            +    V    + +     A++  + I    E  +I +G V  +  +G F+   G  DGL
Sbjct: 182 QEFRNVVVSHKALIEAELEAQK--KEIISKLEKGQILEGTVKNITSYGVFIDL-GGVDGL 238

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           +HI+ LS  RV+   +VV   + + V +LDFDD + +I L +K +  +  
Sbjct: 239 IHITDLSWGRVSDPHEVVALDEKINVVILDFDDEKKRIALGLKQLTPHPW 288



 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 97/257 (37%), Gaps = 26/257 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIG 510
           I  G +K      ++ D+ G E  L      V              +  I  +  + +  
Sbjct: 128 IVQGYIKCRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKIVKINQEFRNV 187

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
            +S   ++ A  +A++  +    E  ++L  +   +  +      + I    +  +I + 
Sbjct: 188 VVSHKALIEAELEAQKKEIISKLEKGQILEGTVKNITSYG-----VFIDLGGVDGLIHIT 242

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIY 623
                G V      V +D+   V I      +   A            ++    +V    
Sbjct: 243 DLS-WGRVSDPHEVVALDEKINVVILDFDDEKKRIALGLKQLTPHPWDALNTELKVGDHV 301

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S  + +    + +  GD V   +L  D +  
Sbjct: 302 KGKVVVIADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQEFLHVGDEVEAVVLTLDREER 361

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + ++  + I
Sbjct: 362 KMSLGIKQLKEDPWETI 378



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 373 DPWETIEVKYPIASKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTQV 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K ++ N  
Sbjct: 433 GAEIDVVVLEIDKENRRLSLGHKQLEDNPW 462



 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           A  EA  +      +    +++ +G V  V      V+     DG++  S+         
Sbjct: 26  ASKEALVKAYDETLNKIAEHQVVEGTVTHVDKKEVIVNIGYKSDGIIPASEFRY----NP 81

Query: 661 SDVVKEGDTVWVKL-LDFDDRGKIKLSMK 688
              +K GD V V + +  D +G+++LS K
Sbjct: 82  D--LKVGDKVEVYVEMQEDKKGQLELSHK 108


>gi|254884274|ref|ZP_05256984.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640643|ref|ZP_07995359.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
 gi|254837067|gb|EET17376.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387706|gb|EFV68569.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
          Length = 709

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 14/163 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +++K L+ +  +L +       + I       V   G   +  I+++      +D  
Sbjct: 560 IVEQIAKDLNCTVDELIKSKELRSRIDIKKYVTPTV---GLPTLTDIMQE------LDKP 610

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G        + E +   + I  +T+  E+  I       + +FG FV       GLVH+S
Sbjct: 611 GRDPRQQIQVFEFDKNVKTIEDLTEGMELPGIVNN----ITNFGCFVDIGIKEKGLVHVS 666

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           QL+ + V+  + VV     V VK++  D +R +I+L+MK ++Q
Sbjct: 667 QLADKFVSDPTTVVSIHQHVRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|150005421|ref|YP_001300165.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
 gi|149933845|gb|ABR40543.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
          Length = 709

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 14/163 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +++K L+ +  +L +       + I       V   G   +  I+++      +D  
Sbjct: 560 IVEQIAKDLNCTVDELIKSKELRSRIDIKKYVTPTV---GLPTLTDIMQE------LDKP 610

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G        + E +   + I  +T+  E+  I       + +FG FV       GLVH+S
Sbjct: 611 GRDPRQQIQVFEFDKNVKTIEDLTEGMELPGIVNN----ITNFGCFVDIGIKEKGLVHVS 666

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           QL+ + V+  + VV     V VK++  D +R +I+L+MK ++Q
Sbjct: 667 QLADKFVSDPTTVVSIHQHVRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|145343076|ref|XP_001416292.1| Plastid ribosomal protein S1, imported to chloroplast, small
           ribosomal subunit [Ostreococcus lucimarinus CCE9901]
 gi|144576517|gb|ABO94585.1| Plastid ribosomal protein S1, imported to chloroplast, small
           ribosomal subunit [Ostreococcus lucimarinus CCE9901]
          Length = 339

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 21/213 (9%)

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
               DF++   D+G            +    +  A  + +  +         VLS +R  
Sbjct: 108 DCDYDFEIIQDDNG-----EGCMTLSVRRMELAKAWDRCREAQADDAALTGDVLSVNRGG 162

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ--TGAKVNIDDDGTVKIASSSLAEI 603
           L     ++    +P       IG+       ++ Q      + +D++    + S  LA  
Sbjct: 163 LLVEVEKLRGF-VPQSH----IGVRTLNREELIGQQLPFKFIEVDEEKNRLVLSHRLATD 217

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             + E         EV  + +G V  V  +GAFV   G + GL+HISQ+S ER+    +V
Sbjct: 218 MVSAEG-------LEVGDVVEGMVQAVKPYGAFVDV-GGQSGLLHISQISHERIVAVENV 269

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           +  GD + V ++  D ++G++ LS K ++QN G
Sbjct: 270 LSPGDRIKVLVMSKDAEKGRLSLSTKKLEQNHG 302


>gi|18417320|ref|NP_567820.1| emb2726 (embryo defective 2726); RNA binding / translation
           elongation factor [Arabidopsis thaliana]
 gi|4972052|emb|CAB43920.1| putative protein [Arabidopsis thaliana]
 gi|7269804|emb|CAB79664.1| putative protein [Arabidopsis thaliana]
 gi|15983773|gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana]
 gi|332660180|gb|AEE85580.1| elongation factor Ts family protein [Arabidopsis thaliana]
          Length = 953

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTV-----KIASSSLAEIEAAREMIRSITDVPEVNKI-- 622
           G  V+  + EQ    V  +D  TV        + +      AR   +S     +  ++  
Sbjct: 76  GTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVP 135

Query: 623 ---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
              + G+V  +  FGAFV F    DGLVH+SQLS   V   S VV  G  V V+L++ D 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  +I L+M+  D    +
Sbjct: 196 ESKRISLTMRENDDPPKR 213



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---SDVVKEGDTVWVKLLDF 677
           ++  G V  +   GAF+      +G +  ++ + + +         ++ G  V V++L  
Sbjct: 249 QMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEADDGIGSMMMGGSSLQAGQEVKVRVLRI 308

Query: 678 DDRGKIKLSMKVVDQNTGK 696
             RG++ L+MK  +++ GK
Sbjct: 309 -ARGRVTLTMK--EEDDGK 324


>gi|228995617|ref|ZP_04155283.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock3-17]
 gi|229003244|ref|ZP_04161081.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock1-4]
 gi|228758014|gb|EEM07222.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock1-4]
 gi|228764189|gb|EEM13070.1| Tex protein-related transcription accessory protein (S1 RNA binding
           domain) [Bacillus mycoides Rock3-17]
          Length = 722

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  G  V V + D D  +G
Sbjct: 653 LEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDVDMKKG 712

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 713 RVALAM 718


>gi|157150717|ref|YP_001449921.1| hypothetical protein SGO_0605 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075511|gb|ABV10194.1| general stress protein GSP13 [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 128

 Score = 80.7 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV       GL+HIS++ T  +    D++  GDTV V++LD
Sbjct: 1   MKIGDKLRGTITGIQPYGAFVELESGITGLIHISEIKTGYIENIHDLLAIGDTVQVQVLD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+   K  LSM+ +++ 
Sbjct: 61  FDEYTKKASLSMRTLEEE 78


>gi|294777759|ref|ZP_06743206.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
 gi|294448403|gb|EFG16956.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
          Length = 709

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 14/163 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +++K L+ +  +L +       + I       V   G   +  I+++      +D  
Sbjct: 560 IVEQIAKDLNCTVDELIKSKELRSRIDIKKYVTPTV---GLPTLTDIMQE------LDKP 610

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G        + E +   + I  +T+  E+  I       + +FG FV       GLVH+S
Sbjct: 611 GRDPRQQIQVFEFDKNVKTIEDLTEGMELPGIVNN----ITNFGCFVDIGIKEKGLVHVS 666

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           QL+ + V+  + VV     V VK++  D +R +I+L+MK ++Q
Sbjct: 667 QLADKFVSDPTTVVSIHQHVRVKVMSIDLERKRIQLTMKGLNQ 709


>gi|213962551|ref|ZP_03390813.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno]
 gi|213954877|gb|EEB66197.1| 30S ribosomal protein S1 [Capnocytophaga sputigena Capno]
          Length = 584

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    KVN +    V    + +       E  + I   
Sbjct: 160 QIDVKPIRDY----EQFVNKTMEFKIVKVNHEFKNVVVSHKALIEADIE--EQKKEIISQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  R+   S+VV     + V +LD
Sbjct: 214 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLIHITDLSWARINHPSEVVSVDQKLNVVILD 272

Query: 677 FDDRG-KIKLSMKVVDQNTG 695
           FDD   +I+L +K + ++  
Sbjct: 273 FDDNKSRIQLGLKQLSKHPW 292



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT+   V   + G V    +FG FV      DGL+HI+ LS  +++   S+ V  
Sbjct: 377 DPWINITEKYPVGSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNS 436

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           GD + V +L+ D  G K+ L  K    N  
Sbjct: 437 GDKIEVVVLELDAEGHKLSLGHKQTTPNPW 466



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ D  +V    KG+VV + D+GAFV      +GL+H+S++S    +    D VK
Sbjct: 289 KHPWDALADDLKVGDKVKGKVVVIADYGAFVEIADGVEGLIHVSEMSWSTHLRSAQDFVK 348

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D +  K+ L +K +  +    I
Sbjct: 349 LGDEVEAVILTLDRNERKMSLGIKQLTPDPWINI 382



 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++++     + N++ +G V ++ D  A +      +G++ +++            +K G
Sbjct: 37  ELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPN------LKVG 90

Query: 668 DTVWVKL-LDFDDRGKIKLSMK 688
           D V V + +  D  G++ LS +
Sbjct: 91  DKVEVLIDIREDKNGQLVLSHR 112


>gi|310640779|ref|YP_003945537.1| tex-like protein protein-like protein [Paenibacillus polymyxa SC2]
 gi|309245729|gb|ADO55296.1| Tex-like protein protein-like protein [Paenibacillus polymyxa SC2]
          Length = 753

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHISQL +  V    DVV  GD V V +L+ D  +G
Sbjct: 678 LQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVTVWVLNVDLKKG 737

Query: 682 KIKLSMK 688
           ++ L+MK
Sbjct: 738 RVGLTMK 744


>gi|251772978|gb|EES53535.1| ribosomal protein S1 [Leptospirillum ferrodiazotrophum]
          Length = 505

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLL 675
           PE +K+   +VV + D+GAF+      +GL+HI+++S    V   S ++  GDTV  K+L
Sbjct: 253 PEGSKV-PAKVVSITDYGAFLEIEPGVEGLMHITEMSWNHEVKHPSKIMAVGDTVEAKVL 311

Query: 676 DFDDRGK-IKLSMKVVDQNTG 695
             D++ + I L +K +  N  
Sbjct: 312 KIDEKNRKISLGLKQLGPNPW 332



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +R++  + G+ I+  + +   K      G + ++   L E    R    ++  +
Sbjct: 113 QIDLRPVRDMDRLVGQPIQVRIIKMNKKR-----GNIIVSRRVLLEEWRDRRKKLTMESL 167

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  + D+GAF+   G  DGL+HI+ +S  RV+   +++  GD + V +L 
Sbjct: 168 KEG-EVLEGIVKNITDYGAFIDL-GGVDGLLHITDMSWGRVSSPQNLMAVGDKINVMVLK 225

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
            D + G++ L +K +  +  
Sbjct: 226 HDKETGRVSLGLKQLKSDPW 245



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               + D   +  I  G+V  + DFG FV      DGL+HIS LS    V   S++ K+G
Sbjct: 331 PWDLVEDRYPIGTIVSGKVKSLTDFGVFVGLDEGIDGLIHISDLSWTRHVRHPSEMFKKG 390

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V   +L  + +R ++ L  K +  +  +
Sbjct: 391 QKVEAIVLKIEKERQRLSLGYKQMASDPWE 420



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 605 AAREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                    TD+PE  ++    KG+V KVMDFG FV      +GLVH+S++      +  
Sbjct: 412 KQMASDPWETDIPERFQVGQSMKGKVTKVMDFGFFVEIAEGVEGLVHVSEVDLPNGERLD 471

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
            +   G  + V+++  D    KI LS+K  D+
Sbjct: 472 QLFPVGTELQVRIVKVDKGERKIGLSVKGADE 503


>gi|330508304|ref|YP_004384732.1| S1 RNA binding domain-containing protein [Methanosaeta concilii
           GP-6]
 gi|328929112|gb|AEB68914.1| S1 RNA binding domain protein [Methanosaeta concilii GP-6]
          Length = 713

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  V  FGAFV     +DGLVH S+L+   V    DVV+    V VK+LD D +R 
Sbjct: 647 VPGIVTNVTSFGAFVDVGVHQDGLVHKSELAKSYVPVPGDVVRVRQKVMVKVLDVDLERK 706

Query: 682 KIKLSMK 688
           +I LSMK
Sbjct: 707 RISLSMK 713


>gi|308068003|ref|YP_003869608.1| hypothetical protein PPE_01222 [Paenibacillus polymyxa E681]
 gi|305857282|gb|ADM69070.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 740

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHISQL +  V    DVV  GD V V +L+ D  +G
Sbjct: 665 LQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVTVWVLNVDLKKG 724

Query: 682 KIKLSMK 688
           ++ L+MK
Sbjct: 725 RVGLTMK 731


>gi|163791752|ref|ZP_02186138.1| general stress protein 13, putative [Carnobacterium sp. AT7]
 gi|159872980|gb|EDP67098.1| general stress protein 13, putative [Carnobacterium sp. AT7]
          Length = 126

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  + KG++  +  +GAFV       GL+HIS+     V   S+V+  G+ + V +LD 
Sbjct: 4   KIGMVIKGKITGIQPYGAFVSLDEETQGLIHISECKHGFVKDLSEVLAVGNEIEVMVLDI 63

Query: 678 DD-RGKIKLSMKVVDQNT 694
           D+   KI LS++ ++++T
Sbjct: 64  DEYTKKISLSLRALEEST 81


>gi|256818976|ref|YP_003140255.1| 30S ribosomal protein S1 [Capnocytophaga ochracea DSM 7271]
 gi|256580559|gb|ACU91694.1| RNA binding S1 domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 586

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    KVN +    V    + +       E  + I   
Sbjct: 160 QIDVKPIRDY----EQFVNKTMEFKIVKVNHEFKNVVVSHKALIEADIE--EQKKEIISQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  R+   S+VV     + V +LD
Sbjct: 214 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLIHITDLSWARINHPSEVVSVDQKLNVVILD 272

Query: 677 FDDRG-KIKLSMKVVDQNTG 695
           FDD   +I+L +K + ++  
Sbjct: 273 FDDNKSRIQLGLKQLSKHPW 292



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT+   V   + G V    +FG FV      DGL+HI+ LS  +++   S+ V  
Sbjct: 377 DPWINITEKYPVGSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNS 436

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           GD + V +L+ D  G K+ L  K    N  
Sbjct: 437 GDKIEVVVLELDAEGHKLSLGHKQTTPNPW 466



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ D  +V    KG+VV + D+GAFV      +GL+H+S++S    +    D VK
Sbjct: 289 KHPWDALADDLKVGDKVKGKVVVIADYGAFVEIADGVEGLIHVSEMSWSTHLRSAQDFVK 348

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D +  K+ L +K +  +    I
Sbjct: 349 LGDEVEAVILTLDRNERKMSLGIKQLTPDPWINI 382



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++++     + N++ +G V ++ D  A +      +G++ +++            +K G
Sbjct: 37  ELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPN------LKVG 90

Query: 668 DTVWVKL-LDFDDRGKIKLSMK 688
           D V V + +  D  G++ LS +
Sbjct: 91  DKVEVLIDIREDKNGQLVLSHR 112


>gi|315224362|ref|ZP_07866196.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287]
 gi|314945752|gb|EFS97767.1| 30S ribosomal protein S1 [Capnocytophaga ochracea F0287]
          Length = 586

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    KVN +    V    + +       E  + I   
Sbjct: 160 QIDVKPIRDY----EQFVNKTMEFKIVKVNHEFKNVVVSHKALIEADIE--EQKKEIISQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  R+   S+VV     + V +LD
Sbjct: 214 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLIHITDLSWARINHPSEVVSVDQKLNVVILD 272

Query: 677 FDDRG-KIKLSMKVVDQNTG 695
           FDD   +I+L +K + ++  
Sbjct: 273 FDDNKSRIQLGLKQLSKHPW 292



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT+   V   + G V    +FG FV      DGL+HI+ LS  +++   S+ V  
Sbjct: 377 DPWINITEKYPVGSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNS 436

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           GD + V +L+ D  G K+ L  K    N  
Sbjct: 437 GDKIEVVVLELDAEGHKLSLGHKQTTPNPW 466



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ D  +V    KG+VV + D+GAFV      +GL+H+S++S    +    D VK
Sbjct: 289 KHPWDALADDLKVGDKVKGKVVVIADYGAFVEIADGVEGLIHVSEMSWSTHLRSAQDFVK 348

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D +  K+ L +K +  +    I
Sbjct: 349 LGDEVEAVILTLDRNERKMSLGIKQLTPDPWINI 382



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++++     + N++ +G V ++ D  A +      +G++ +++            +K G
Sbjct: 37  ELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPN------LKVG 90

Query: 668 DTVWVKL-LDFDDRGKIKLSMK 688
           D V V + +  D  G++ LS +
Sbjct: 91  DKVEVLIDIREDKNGQLVLSHR 112


>gi|218440421|ref|YP_002378750.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7424]
 gi|218173149|gb|ACK71882.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
          Length = 328

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 185 RALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 243

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 244 NDELKVMIIDLDAERGRISLSTKQLEPEAG 273



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV   S+V++  +T    +L D ++
Sbjct: 34  DIVAGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDDPSEVLQANETREFFILTDENE 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 94  DGQLTLSIRRIE 105


>gi|331266273|ref|YP_004325903.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
 gi|326682945|emb|CBZ00562.1| S1 RNA binding domain protein [Streptococcus oralis Uo5]
          Length = 732

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   
Sbjct: 655 KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKI 714

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R K+ LS+   D++
Sbjct: 715 DTEREKVNLSLLAPDES 731


>gi|282859452|ref|ZP_06268557.1| 30S ribosomal protein S1 [Prevotella bivia JCVIHMP010]
 gi|282587680|gb|EFB92880.1| 30S ribosomal protein S1 [Prevotella bivia JCVIHMP010]
          Length = 589

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +     A+   + I   
Sbjct: 156 QIDVHPIRDYDVFVGKTMEFKV----VKINQEFRNVVVSHKALIEAELEAQ--RKEIISH 209

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV   + + V +LD
Sbjct: 210 LEKGQILEGTVKNITTYGVFIDL-GGVDGLIHITDLSWGRVSDPHEVVTLDEKIKVVILD 268

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 269 FDEEKKRIALGLKQLTPHPW 288



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + +   +S
Sbjct: 131 GYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDVFVGKTMEFKVVKINQEFRNVVVS 190

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A+R  +    E  ++L  +   +  +      + I    +  +I +    
Sbjct: 191 HKALIEAELEAQRKEIISHLEKGQILEGTVKNITTYG-----VFIDLGGVDGLIHITDLS 245

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D+   V I      +   A            ++    +V    KG+
Sbjct: 246 -WGRVSDPHEVVTLDEKIKVVILDFDEEKKRIALGLKQLTPHPWDALESELKVGDHVKGK 304

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAFV      +GL+H+S++S  + +    + +K GD V   +L  D D  K+ 
Sbjct: 305 VVVMADYGAFVEIQPGVEGLIHVSEMSWSQHLRSAQEFMKVGDEVEAVILTLDRDERKMS 364

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 365 LGIKQLKADPWEAI 378



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  ++
Sbjct: 373 DPWEAIEAKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWTKKVKHPSEFTQQ 432

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V +L+ D +  ++ L  K ++ N    
Sbjct: 433 GAEIDVIVLEIDKENRRLSLGHKQLEANPWDE 464



 Score = 41.1 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D+        +S  ++  A +   +       N++ +G V+ V      V+     DG++
Sbjct: 16  DEFENGTSVDASKNDLTKAYDDTLNKIQE---NQVVEGTVISVDKKEVIVNIGYKSDGII 72

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV-DQNTGKPI 698
             S+            +K GD V V +    D RG++ LS K    Q + + I
Sbjct: 73  PASEFRY----NPE--LKAGDKVEVYVESQEDKRGQLVLSHKKARLQKSWENI 119


>gi|157164057|ref|YP_001466439.1| 30S ribosomal protein S1 [Campylobacter concisus 13826]
 gi|112801623|gb|EAT98967.1| 30S ribosomal protein S1 [Campylobacter concisus 13826]
          Length = 558

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D +    + S      +  ++   +++ + E + + +G V K+  +G FV   G  D
Sbjct: 168 IKVDKEENSIVVSRKKILDDDRKKRKEALSSIVENDSVIEGTVKKITTYGMFVDV-GGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           GLVH S++S +     S + KEGD V VK++ +D+  + + LS+K    +  + I+
Sbjct: 227 GLVHYSEISYKGPVNPSSLYKEGDKVLVKVISYDNEKRHLSLSIKAATPDPWEEII 282



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I      I    E     + ID  G     S    +    +          E   + KG 
Sbjct: 327 IKNPKDHISEGQEIDVEVIEIDAKGHRLRVSL---KNLLPKPFDEFKAKFKEG-DVVKGV 382

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V  + +FGAFV   G  +GL+H    S +R  K  D+ K GD + VK++  D    KI L
Sbjct: 383 VTTITNFGAFVRV-GCVEGLLHNEDASWDRNDKCKDMFKAGDELEVKIIKIDSAEQKISL 441

Query: 686 SMKVVDQNT 694
           S+K + Q+ 
Sbjct: 442 SLKDLKQSP 450



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            +++  +   V  I KG +  + DFG FV      D L+    L +      +  +K GD
Sbjct: 450 PVQAFANKFSVGDIVKGTIRDIKDFGVFVELGDNVDALIRKEDLGSVD----ASTLKIGD 505

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
            +   +   D++  +I+LS++ + +   + ++
Sbjct: 506 EIEAAIAFIDEKKNRIRLSIRRLAKQKEREVL 537


>gi|329928970|ref|ZP_08282780.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328937222|gb|EGG33649.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 731

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G
Sbjct: 659 LQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKG 718

Query: 682 KIKLSMK 688
           ++ L+M+
Sbjct: 719 RVGLTMR 725


>gi|262282223|ref|ZP_06059992.1| general stress protein GSP13 [Streptococcus sp. 2_1_36FAA]
 gi|262262677|gb|EEY81374.1| general stress protein GSP13 [Streptococcus sp. 2_1_36FAA]
          Length = 128

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV       GL+HIS++ T  +    D++  GDTV V++LD
Sbjct: 1   MKIGDKLRGTITGIQPYGAFVELESGITGLIHISEIKTGYIENIHDLLAIGDTVQVQVLD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+   K  LSM+ +++ 
Sbjct: 61  FDEYTKKASLSMRTLEEE 78


>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
           VaMs.102]
 gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
           VaMs.102]
          Length = 155

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 1/140 (0%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+       GSS    G T+ + VVT G  E ++   +   ++  
Sbjct: 14  RVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVT-GPTEPQRRGPAGGQSKDA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +       ++ +  + G   +R         +A    L        ++ I   +   
Sbjct: 73  AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132

Query: 433 DGSSSMATVCGSSLALMDAG 452
           DGS   A +  ++LAL+DAG
Sbjct: 133 DGSLLAALLNATTLALVDAG 152



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY----LRRES 82
           +DG+     G T V+  V         Q   P     ++    V  +  G+     R+  
Sbjct: 36  ADGSSYLEIGHTKVMCVVTGPTEP---QRRGPAGGQSKDAAVNVSIVVAGFSSVDRRKYG 92

Query: 83  RPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R  +    +   + ++            +   + ++V+  D   S     + A + AL+ 
Sbjct: 93  RNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQDG--SLLAALLNATTLALVD 150

Query: 141 SG 142
           +G
Sbjct: 151 AG 152


>gi|51244751|ref|YP_064635.1| 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
 gi|50875788|emb|CAG35628.1| probable 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
          Length = 570

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 7/214 (3%)

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
           D +V   D+    ++   + GG+  +       +       I  E S +  E R++    
Sbjct: 67  DTEVVVGDTFEVFVERRKEEGGLLLSREKAIAIKVWEDIAKIQEEDSTI--EGRIESRVK 124

Query: 550 TPRVEIMAIPPDQIRNVI--GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
                 + +P     + I       +   I E    KV   +     +  S  A +E AR
Sbjct: 125 GGMSVDIGVPAFLPYSQIDLRPVKDLDALIGESLEFKVLKFNKKRNNVVISRRAILEEAR 184

Query: 608 EMIRSITD-VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
             +R       E  +I KG +  + D+G F+   G  DGL HI+ LS  RV+  + + K 
Sbjct: 185 NKLREEMRSKLEEGQIIKGAITNITDYGLFIDMGGM-DGLCHITDLSWGRVSHPAKLYKV 243

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G+ + VK+L +D +  ++ L +K +  +    +V
Sbjct: 244 GEELEVKVLKYDKEHDRVSLGVKQLRDDPWATVV 277



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   ++ D   V++   G+VV + D+G FV      +GL+H+S+++  ++    S +V  
Sbjct: 271 DPWATVVDRYPVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSKMVAV 330

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +L+ + +  +I L MK +  N  
Sbjct: 331 GDEIEVMVLNIETETKRISLGMKQLQPNPW 360



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               +T+   V  I +G++  + DFG F+      DGL+H+S LS  ER+   ++   +G
Sbjct: 359 PWDLVTENYPVGSIIEGKIKNITDFGVFIGIEEGIDGLIHVSDLSWTERIKHPTEKYAKG 418

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           + +   +L  D +  +  L +K +  +  + 
Sbjct: 419 EMIQAVVLKIDKENERFSLGVKQLIPDPWQE 449



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +   +      + +G++  V DFG FV      +GLVH+S++S +++     + + G
Sbjct: 445 DPWQEAYNNYPSGTVVEGEITNVTDFGVFVKLEEGIEGLVHVSEISKDKIKTPVGMYQVG 504

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVV 690
           DT+   +++   +  KI LS+K +
Sbjct: 505 DTLKAIVINVSAKDRKIGLSVKTL 528


>gi|167465849|ref|ZP_02330938.1| hypothetical protein Plarl_25333 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 143

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             FGAFV       GLVHIS+++   V   ++ +K  D V VK+++ D  GKI LS+K  
Sbjct: 1   THFGAFVELEEGVTGLVHISEIAHNYVKDVNEHLKIDDKVLVKVINVDKDGKIGLSIKQT 60

Query: 691 DQNTGK 696
            +   +
Sbjct: 61  KEKPPE 66


>gi|86608329|ref|YP_477091.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556871|gb|ABD01828.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 304

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ +G+V  +  FG FV       GL+HI Q+S   VA   D+ K G  +   ++D D+ 
Sbjct: 198 QVVEGKVSGLKPFGVFVDLEEGVTGLLHIKQVSQSFVASLPDLFKPGQRIKAVVIDVDEA 257

Query: 680 RGKIKLSMKVVDQNTGK 696
           +G++ LS++V++++ G+
Sbjct: 258 KGRMALSLRVLEKHPGE 274


>gi|311031149|ref|ZP_07709239.1| S1 RNA binding domain protein [Bacillus sp. m3-13]
          Length = 728

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D                  +      +  +     +G V  V+DFGAFV     +DG
Sbjct: 618 DIIDSLIRPERDPRDDMPTPLLKQDVLKMEDLQKGMELEGTVRNVVDFGAFVDIGVKQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LVHIS+LS   V    DVV  GD V V +   + ++G++ L+M
Sbjct: 678 LVHISKLSDRFVKHPLDVVSVGDIVTVWVDGVEVNKGRVSLTM 720


>gi|253577005|ref|ZP_04854328.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843615|gb|EES71640.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 743

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G
Sbjct: 670 LQGTVRNVIDFGAFVDIGIKNDGLVHISQLSNGYVKHPMDVVSVGDNVTVWVLNVDVKKG 729

Query: 682 KIKLSMK 688
           ++ L+M+
Sbjct: 730 RVGLTMR 736


>gi|239637363|ref|ZP_04678345.1| protein YhgF [Staphylococcus warneri L37603]
 gi|239596963|gb|EEQ79478.1| protein YhgF [Staphylococcus warneri L37603]
          Length = 716

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 13/138 (9%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMI 610
           +  + +I   +I + + +G   +  I++       +  D+    I  S +  IE      
Sbjct: 585 KSTLDSIDVHEIADQLNIGIPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIE------ 638

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
               D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V
Sbjct: 639 ----DLSEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIV 693

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V +L  D  + K+ L++
Sbjct: 694 DVWILSIDTQKDKVSLTI 711


>gi|314935980|ref|ZP_07843330.1| S1 RNA binding domain protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655986|gb|EFS19728.1| S1 RNA binding domain protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 715

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  ++  N IG+G   +  IV ++    N D   +         E    +  I SI D+ 
Sbjct: 590 INIEEKSNEIGIGKPTLEDIV-KSLKTPNRDPRDSY--------ETPQLKSDILSIEDLS 640

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  K+  G V  V+DFGAFV     +DGLVHIS+LS + V    D++  GD V V +L+ 
Sbjct: 641 KGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKYVKNPMDIISVGDIVDVWILNI 699

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 700 DKNKEKVALTM 710


>gi|313672062|ref|YP_004050173.1| RNA binding s1 domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312938818|gb|ADR18010.1| RNA binding S1 domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 572

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           G  ++IDD    K+  S  A  E   ++++          I KG++  + +FG FV F G
Sbjct: 342 GRVIDIDDK-REKLVISVKALQENPWDLMKKNHPE---GSIVKGKIKGITEFGLFVDFGG 397

Query: 642 ARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             DGLV  + +S  E V+  ++  K GD V  K+L  D ++ +I L +K +++N  K I
Sbjct: 398 VVDGLVRKTDISWTEEVSDLNERFKVGDEVEAKILTIDPEKERIALGIKQLEKNPWKEI 456



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 91/262 (34%), Gaps = 30/262 (11%)

Query: 454 PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
           P    +    +  + D D  +     +      G +D      D  ++    D     + 
Sbjct: 31  PTKGSIVKCTVVGITDNDILV-----NFGYKTEGVVDINEFRKDGELSVKLGDE----LE 81

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             ++ ++   A         E+   + E    + +       +    ++ +  +G  G+V
Sbjct: 82  LEVVSVSGGGAYVKLSKKGLELRHDIDEVVKSINKGKAIPVKIVKYDEKNKKYLGKHGEV 141

Query: 574 IRGIVEQ------------------TGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SIT 614
              I+E                      K+   D  +     S    +  A+E  + +  
Sbjct: 142 DVHILEHQIDHKNKIKEPKHYIGKVFNCKILKFDSKSKTALGSRKQYLIEAQEEEKKNFF 201

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  +   + KG V  + +FGAF++     DG +    ++  RV K    ++  D V VK+
Sbjct: 202 NSIKEGDVLKGTVKSIKEFGAFINLGP-VDGFLARENIAWGRVTKVEKYLEVDDKVDVKI 260

Query: 675 LDFD-DRGKIKLSMKVVDQNTG 695
           +  D +  KI LS+K + +N  
Sbjct: 261 IKIDRENSKIDLSIKDLKENPW 282



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++   + +  KV   I+     K++ ++               AA +    +    + 
Sbjct: 243 VTKVEKYLEVDDKVDVKII-----KIDRENSKIDLSIKDLKENPWAAAKSKYPVGSEIKG 297

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
             I K      +  G  V      +G V   +LS   + K++  + +GD V  +++D DD
Sbjct: 298 TVIVK------LKNGYVVEIESGVEGFVPYEELSW--IKKSNVSLNKGDQVIGRVIDIDD 349

Query: 680 -RGKIKLSMKVVDQNTG 695
            R K+ +S+K + +N  
Sbjct: 350 KREKLVISVKALQENPW 366



 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +   + I  +  V K+ +  V  V      V+      G++ I ++   + +  S+  K 
Sbjct: 450 KNPWKEIDKLYPVGKVVEAVVDSVEKDQLVVNLTKGIKGIIPIKEVDEGK-SNLSEQFKH 508

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V   ++  D    KI LS+K
Sbjct: 509 GDVVKATVIKTDVKTKKILLSIK 531


>gi|282856368|ref|ZP_06265647.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
 gi|282585739|gb|EFB91028.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
          Length = 518

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID +      S   A+         ++ +  + ++  KG V  V DFGAFV      +
Sbjct: 263 IGIDKENNKISLSIRQAQGN----PWDTVMERWQKDQQTKGVVTNVTDFGAFVEVEPGIE 318

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GL+HI  LS  R+    +V+ +G  V   +L+ D ++ ++ L  K +
Sbjct: 319 GLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSLGYKQL 365



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
           +VV++ DFGAFV      +GL+HISQLST RV K  DV++EG  V  ++L+ +    +I+
Sbjct: 385 KVVRLADFGAFVEIEKGVEGLIHISQLSTHRVEKPGDVLQEGQEVTARVLEVNPAERRIR 444

Query: 685 LSMKVVD 691
           LS+  ++
Sbjct: 445 LSISAIE 451



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-EMIRSITDVPEVNKIYKGQ 626
           G G    R   E+   ++   D    ++  S  + ++               V  +  G 
Sbjct: 156 GRGVNPGRFEGEEFQVRLLEMDKRKRRLVLSRRSLLDEDLSAKREKFYSEVNVGDVLDGT 215

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  V  FG FV+     DGLVH+S++S +R +K+ +  K+GD V VK++  D +  KI L
Sbjct: 216 VSSVTTFGLFVNVGP-LDGLVHVSEVSWQRSSKSRETYKKGDAVKVKVIGIDKENNKISL 274

Query: 686 SMKVVDQNTGKPIV 699
           S++    N    ++
Sbjct: 275 SIRQAQGNPWDTVM 288


>gi|328956882|ref|YP_004374268.1| general stress protein 13 [Carnobacterium sp. 17-4]
 gi|328673206|gb|AEB29252.1| general stress protein 13 [Carnobacterium sp. 17-4]
          Length = 126

 Score = 80.7 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG++  +  +GAFV       GL+HIS+     V   ++V+  G+ + V +
Sbjct: 1   MKYKIGMVIKGKITGIQPYGAFVSLDDETQGLIHISECKHGFVKDLNEVLTVGNEIEVMV 60

Query: 675 LDFDD-RGKIKLSMKVVDQNT 694
           LD D+   KI LS++ +++NT
Sbjct: 61  LDIDEYTKKISLSLRTLEENT 81


>gi|255546407|ref|XP_002514263.1| elongation factor ts, putative [Ricinus communis]
 gi|223546719|gb|EEF48217.1| elongation factor ts, putative [Ricinus communis]
          Length = 972

 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            +T    +I  D     A +  +      EM     +       + G+V  +  FGAFV 
Sbjct: 110 AETSENSSIKSDSNRAPAQTKRSRPGRKSEMPPVTNEELIPGATFTGKVRSIQPFGAFVD 169

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           F    DGLVH+S+LS   V    +VV  G  V V+L++ + + G+I L+M+  D
Sbjct: 170 FGAFTDGLVHVSRLSDNFVKDVGNVVSVGQEVTVRLVEANTETGRISLTMRESD 223



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT--SDVVKEGDTVWVKLLDFDDR 680
            +G V  +   G F+      +G +  S+ S   +        ++ G  V V++L    R
Sbjct: 271 LEGTVKNLTRSGTFISLPEGEEGFLPTSEESDGGLESMMGGSSLEVGQEVSVRVLRI-SR 329

Query: 681 GKIKLSMKVVDQN 693
           G++ L+MK  + N
Sbjct: 330 GQVTLTMKKEEDN 342


>gi|149923649|ref|ZP_01912045.1| ribosomal protein S1 [Plesiocystis pacifica SIR-1]
 gi|149815464|gb|EDM75001.1| ribosomal protein S1 [Plesiocystis pacifica SIR-1]
          Length = 391

 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + I D G   + S      E   +  +++ +     +I  G V  +  +GAFV   G  +
Sbjct: 162 LEIRDKGRSVVVSRKALLQEEREQKGKALLEQLAEGQIVTGTVQTIQPYGAFVDL-GGVE 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-----GKIKLSMKVVDQNTG 695
           GL+HIS+L   RV +  DVV  G+ + VK+L  +        +I LS++  +Q  G
Sbjct: 221 GLIHISELGHGRVERVEDVVSVGEQIRVKVLTIEPGDGKVATRISLSLRQAEQGAG 276



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            +++ +V+ +G        EQ   KV   + G  K+A+     +  A +         E 
Sbjct: 233 VERVEDVVSVG--------EQIRVKVLTIEPGDGKVATRISLSLRQAEQGAGPAQAGSE- 283

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            K+   +VVKV  FG FV    +  G+V   +L              G  V V  +  DD
Sbjct: 284 RKVVDAEVVKVETFGVFVETATSG-GIVPTRELDLPPGGDPRRAYPVGKQVRVVAIGTDD 342

Query: 680 RGKIKLSMKVVDQNTGK 696
           +G+ + SM+ V++   +
Sbjct: 343 KGRTRFSMRRVEETEAR 359


>gi|315649164|ref|ZP_07902254.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
 gi|315275383|gb|EFU38741.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
          Length = 737

 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G
Sbjct: 666 LQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKG 725

Query: 682 KIKLSMK 688
           ++ L+M+
Sbjct: 726 RVGLTMR 732


>gi|256370590|ref|YP_003108415.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri SMDSEM]
 gi|256009382|gb|ACU52742.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri SMDSEM]
          Length = 648

 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    +++     G+ + G +     K+N      V      L +    +++I      
Sbjct: 174 QIEKKPVKDFDYYVGQTMEGKI----VKINNKTKNVVVSHKILLEKDLEKKKLI----SQ 225

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I  G V  +  +G+F+   G  DGL HI+ +S ER+   S+ ++ G  +   +L 
Sbjct: 226 LEKGQILIGIVKNLTHYGSFIDVGGGIDGLCHITDISWERIDHPSEKLEVGQIINFVILS 285

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
            D  + +++L +K +  N  
Sbjct: 286 IDQIKNRVQLGLKQLQTNPW 305



 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
                    +  K+  G V  V D+GAFV      +GLVH+S++S  +++    + VK G
Sbjct: 304 PWIHFEKKLKKGKVLIGTVSVVTDYGAFVELFPGVEGLVHVSEMSWHQQLKSAKNFVKIG 363

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           + V + +L+ +    K+ LSMK +  +  + I
Sbjct: 364 EKVKILILNLEHSAQKMSLSMKRLSPDPWENI 395



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +     G V    + G  +      +GL++ S +S  E++    D+ K+
Sbjct: 390 DPWENIENKYPLGTRNIGTVKSFTNCGVRLELEPGIEGLLYNSDISWTEKIKSGLDIYKK 449

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           GD V + +L  D   + +    K + +N  + +
Sbjct: 450 GDLVQLIVLGLDVMTRKLNFGCKQLTKNPWENL 482


>gi|255322491|ref|ZP_05363636.1| S1 RNA binding domain protein [Campylobacter showae RM3277]
 gi|255300399|gb|EET79671.1| S1 RNA binding domain protein [Campylobacter showae RM3277]
          Length = 556

 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++         +   + KG V  V +FGAFV   GA +GL+H    S +R  K  D+ K 
Sbjct: 362 KKPFDEFKAQFKEGDVTKGVVTSVTNFGAFVRI-GAVEGLLHNEDASWDRNDKCKDLFKV 420

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD V VK++  D +  KI LS K + Q+ 
Sbjct: 421 GDEVEVKIIKIDSNEQKISLSQKDLKQSP 449



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K++ D+   +      L E    +  + S     E   + +G V K+  +G FV   G 
Sbjct: 168 IKIDKDEQSIIVSRKKLLDEDRKKKREVISAV--AENTDVIEGVVKKITTYGMFVDV-GG 224

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            DGLVH S++S +       + KEGD V VK++ +D+  K + LS+K    +  + I
Sbjct: 225 VDGLVHYSEISYKGPVNPGSIYKEGDKVLVKVIKYDNEKKHLSLSIKAATPDPWEEI 281



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+ +++  +G +V   I+     K++ ++                A            V 
Sbjct: 412 DKCKDLFKVGDEVEVKII-----KIDSNEQKISLSQKDLKQSPVQA------YAKKFNVG 460

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I  G++  + DFG FV      D L+    L           +   D +   +   D++
Sbjct: 461 DIVTGKIRDIKDFGVFVELGDNVDALIRKEDLGGVSAEN----LNINDNIEAAIAFIDEK 516

Query: 681 G-KIKLSMKVVDQNTGKPIV 699
             +I+LS++ + +   + ++
Sbjct: 517 KNRIRLSVRRLARQKEREVL 536


>gi|317151867|ref|YP_004119915.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942118|gb|ADU61169.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 732

 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   S            G V  V  FGAFV     RDGLVH+SQL+   V   S+VV 
Sbjct: 641 AFDENVSDIKDLREGMRLPGIVTNVTKFGAFVDVGVHRDGLVHVSQLADRFVRDPSEVVA 700

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688
            G  V V ++  D  RG+I LSMK
Sbjct: 701 AGREVMVTVIGLDQKRGRINLSMK 724


>gi|260891262|ref|ZP_05902525.1| protein YhgF [Leptotrichia hofstadii F0254]
 gi|260859289|gb|EEX73789.1| protein YhgF [Leptotrichia hofstadii F0254]
          Length = 488

 Score = 80.7 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 18/196 (9%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA--IPPD---QIRNVI 567
               +        +    +   +    SE+        P    +A  I  D   ++ ++ 
Sbjct: 293 DRKQLKKVKGLGDKAFEQMAGFVVVPDSENPFDNTIIHPESYHIAEIILKDAGCKVEDLK 352

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN------- 620
                V + + +    K+  ++D   + A      +   R   R   + P +        
Sbjct: 353 EDLDVVRQKLQKIDLEKIIKENDFGRETAKDVYEALLKDRRDPRDEFEKPLLRSDILNMD 412

Query: 621 -----KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 + +G V  V  FGAFV      D L+HIS+++ + V+  +  +  G  + VK+L
Sbjct: 413 DLTEGMVLEGTVRNVAKFGAFVDIGLKNDALIHISEIAEKFVSDATKELSVGQIIKVKIL 472

Query: 676 DFD-DRGKIKLSMKVV 690
             D +RG++ L+ K +
Sbjct: 473 SLDKERGRVGLTRKGL 488


>gi|332878224|ref|ZP_08445952.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683836|gb|EGJ56705.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 586

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    KVN +    V    + +       E  + I   
Sbjct: 160 QIDVKPIRDY----EQFVNKTMEFKIVKVNHEFKNVVVSHKALIEADIE--EQKKEIISQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  R+   S+VV     + V +LD
Sbjct: 214 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLIHITDLSWARINHPSEVVSVDQKLNVVILD 272

Query: 677 FDDRG-KIKLSMKVVDQNTG 695
           FDD   +I+L +K + ++  
Sbjct: 273 FDDNKSRIQLGLKQLSKHPW 292



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +IT+   V   + G V    +FG FV      DGL+HI+ LS  +++   S+ V  
Sbjct: 377 DPWINITEKYPVGSKHTGTVRNFTNFGVFVELEEGIDGLIHITDLSWTKKIKHPSEFVNT 436

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           GD + V +L+ D  G K+ L  K    N  
Sbjct: 437 GDKIEVMVLELDAEGHKLSLGHKQTTPNPW 466



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ +  +V    KG+VV + D+GAFV      +GL+H+S++S    +    D VK
Sbjct: 289 KHPWDALAEDLKVGDKVKGKVVVIADYGAFVEIADGVEGLIHVSEMSWSTHLRSAQDFVK 348

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D +  K+ L +K +  +    I
Sbjct: 349 LGDEVEAVVLTLDRNERKMSLGIKQLTPDPWINI 382



 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E++++     + N++ +G V ++ D  A +      +G++ +++            +K G
Sbjct: 37  ELVKNNFVDTQDNEVVEGVVTRITDREAIIDINAKSEGVISLNEFRYNPN------LKVG 90

Query: 668 DTVWVKL-LDFDDRGKIKLSMK 688
           D V V + +  D  G++ LS +
Sbjct: 91  DKVEVLIDIREDKNGQLVLSHR 112


>gi|294792890|ref|ZP_06758037.1| S1 RNA binding domain protein [Veillonella sp. 6_1_27]
 gi|294456789|gb|EFG25152.1| S1 RNA binding domain protein [Veillonella sp. 6_1_27]
          Length = 767

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  GD +  +++  
Sbjct: 642 KVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAVGDIIEAQIISV 700

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I LS+K +     K
Sbjct: 701 DVKRNRIGLSIKALQPEKPK 720


>gi|116333784|ref|YP_795311.1| RNA-binding protein [Lactobacillus brevis ATCC 367]
 gi|116099131|gb|ABJ64280.1| RNA binding protein (S1 domain) [Lactobacillus brevis ATCC 367]
          Length = 129

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +   G +  +  +GAFV   G R GL+HIS+     V    D +     V V +LD 
Sbjct: 4   QIGQRVTGHITGIQPYGAFVSLGGHRQGLIHISECHCGYVKDIHDYLAVNQEVDVVILDI 63

Query: 678 DD-RGKIKLSMKVVD 691
           D+  GKI LS++ ++
Sbjct: 64  DEFTGKISLSLRCLE 78


>gi|116494372|ref|YP_806106.1| RNA-binding protein [Lactobacillus casei ATCC 334]
 gi|191637707|ref|YP_001986873.1| RNA binding protein (S1 domain) [Lactobacillus casei BL23]
 gi|227534523|ref|ZP_03964572.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239629756|ref|ZP_04672787.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065883|ref|YP_003787906.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|116104522|gb|ABJ69664.1| RNA binding protein (S1 domain) [Lactobacillus casei ATCC 334]
 gi|190712009|emb|CAQ66015.1| RNA binding protein (S1 domain) [Lactobacillus casei BL23]
 gi|227187922|gb|EEI67989.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239528442|gb|EEQ67443.1| RNA binding protein [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438290|gb|ADK18056.1| RNA binding protein (S1 domain) [Lactobacillus casei str. Zhang]
 gi|327381766|gb|AEA53242.1| putative transcriptional accessory protein [Lactobacillus casei
           LC2W]
 gi|327384930|gb|AEA56404.1| putative transcriptional accessory protein [Lactobacillus casei
           BD-II]
          Length = 127

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               +  I  G+V  V  +GAFV       GLVHIS+     V  TSD+   G  V V +
Sbjct: 1   MEYRIGDILTGKVTGVQPYGAFVMLDEHTQGLVHISECQHGYVKDTSDIFTVGQRVEVVI 60

Query: 675 LDFDD-RGKIKLSMKVVDQNT 694
           LD D+   KI LS++ +  + 
Sbjct: 61  LDIDEYTQKISLSLRALQASP 81


>gi|261409036|ref|YP_003245277.1| Tex-like protein [Paenibacillus sp. Y412MC10]
 gi|261285499|gb|ACX67470.1| Tex-like protein protein-like protein [Paenibacillus sp. Y412MC10]
          Length = 740

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHISQLS   V    DVV  GD V V +L+ D  +G
Sbjct: 666 LQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKG 725

Query: 682 KIKLSMK 688
           ++ L+M+
Sbjct: 726 RVGLTMR 732


>gi|170087298|ref|XP_001874872.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 255

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 77/226 (34%), Gaps = 16/226 (7%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +    R S  +R I  Q GL+ +  GS+     +T+ I     G R+ +      +  +
Sbjct: 32  GMPRRNRASVDIRPIFLQPGLINQATGSAYIETQNTK-IACAVFGPRQAKNV----AFNE 86

Query: 371 RNDFMMHYNFLPCATGEVS-RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +    +   F P +       M     R I       +AI   +         + I   I
Sbjct: 87  KGRLNVDVKFAPFSCDRRRAPMRDAEDRSI--AMAIHQAISSSVRLDVLPKSVIDIFITI 144

Query: 430 TESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            ESDG      A V  +S AL DAG+ I   VA  +   V +     I  D S  E    
Sbjct: 145 VESDGIEGCVAAGVIVASTALTDAGIEIFGLVASCSAAAVGED----IWLDPSLRESQES 200

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
                ++   +  T   +       + +++  A   A   R   ++
Sbjct: 201 RGTLVLSCMPALSTVSSIWQTGNMNTGDVL--ACMDACNSRCTDIH 244



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER---TYAV 70
           RP+ L+ G I  Q+ G+       T +   V   R  K+        V + E+      V
Sbjct: 44  RPIFLQPGLI-NQATGSAYIETQNTKIACAVFGPRQAKN--------VAFNEKGRLNVDV 94

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNET------QVIINVMQHDLES 124
              P    RR +   + E    R I  +I    S   + +        + I +++ D   
Sbjct: 95  KFAPFSCDRRRAPMRDAE---DRSIAMAIHQAISSSVRLDVLPKSVIDIFITIVESDGIE 151

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS 173
                 ++ AS AL  +G+   G V       +     L+P L E Q S
Sbjct: 152 GCVAAGVIVASTALTDAGIEIFGLVASCSAAAVGEDIWLDPSLRESQES 200


>gi|314933658|ref|ZP_07841023.1| ribosomal protein S1 [Staphylococcus caprae C87]
 gi|313653808|gb|EFS17565.1| ribosomal protein S1 [Staphylococcus caprae C87]
          Length = 392

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    A  GLVHIS++  + +   S+ ++ G 
Sbjct: 268 PFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPAVQGLVHISEIDHKHIGSPSEKLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 328 QVNVKILGIDEENERISLSIKA 349



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+        ++  V ++  ++ + E   +    +  + 
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEELDP-----ENNRVILSRKAVEQAENDVKKASLLDSLS 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
           E   +  G+V ++ +FGAF+   G  DGLVH+S+LS E V     VV  GD         
Sbjct: 193 EG-DVIDGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVESPEQVVSVGDNVKVKVKSV 250

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             D  +I LS+K       + I
Sbjct: 251 EKDSERISLSIKDTLPTPFENI 272



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        +D G   LS + ++
Sbjct: 64  GDEVEAYVTKIEFDEENDSGAYILSKRQLE 93


>gi|332522642|ref|ZP_08398894.1| S1 RNA binding domain protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313906|gb|EGJ26891.1| S1 RNA binding domain protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 117

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++   + G +  +  +GAFV       GL+HIS++ T  +    D++  GD V V+++D
Sbjct: 1   MKIGDKFHGTITGIKPYGAFVALDNGTTGLIHISEIKTGYIDNIHDILAVGDAVDVQVVD 60

Query: 677 FDDRG-KIKLSMKVVDQN 693
           +D+   K+ LSM+ +++ 
Sbjct: 61  YDEFNQKVSLSMRTLEEE 78


>gi|223043234|ref|ZP_03613281.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis
           SK14]
 gi|222443445|gb|EEE49543.1| putative 30S ribosomal protein S1 homolog [Staphylococcus capitis
           SK14]
          Length = 392

 Score = 80.3 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    A  GLVHIS++  + +   S+ ++ G 
Sbjct: 268 PFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPAVQGLVHISEIDHKHIGSPSEKLEPGQ 327

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 328 QVNVKILGIDEENERISLSIKA 349



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+        ++  V ++  ++ + E   +    +  + 
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEELDP-----ENNRVILSRKAVEQAENDVKKASLLDSLS 192

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
           E   +  G+V ++ +FGAF+   G  DGLVH+S+LS E V     VV  GD         
Sbjct: 193 EG-DVIDGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVESPEQVVSVGDNVKVKVKSV 250

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             D  +I LS+K       + I
Sbjct: 251 EKDSERISLSIKDTLPTPFENI 272



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        +D G   LS + ++
Sbjct: 64  GDEVEAYVTKIEFDEENDSGAYILSKRQLE 93


>gi|242373783|ref|ZP_04819357.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1]
 gi|242348520|gb|EES40122.1| 30S ribosomal protein S1 [Staphylococcus epidermidis M23864:W1]
          Length = 399

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +I      + + +G VV++ +FGAFV    A  GLVHIS++  + +   S+ ++ G 
Sbjct: 275 PFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPAVQGLVHISEIDHKHIGSPSEKLEPGQ 334

Query: 669 TVWVKLLDFDDRG-KIKLSMKV 689
            V VK+L  D+   +I LS+K 
Sbjct: 335 QVNVKILGIDEENERISLSIKA 356



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+        ++  V ++  ++ + E   +    +  + 
Sbjct: 145 ISTDFIEDFSVFDGQTIRIKVEELDP-----ENNRVILSRKAVEQAENDVKKASLLDSLS 199

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
           E   +  G+V ++ +FGAF+   G  DGLVH+S+LS E V    +VV  GD         
Sbjct: 200 EG-DVIDGKVARLTNFGAFIDI-GGVDGLVHVSELSHEHVQSPEEVVSVGDEVKVKVKSV 257

Query: 677 FDDRGKIKLSMKVVDQNTGKPI 698
             D  +I LS+K       + I
Sbjct: 258 EKDSERISLSIKDTLPTPFENI 279



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTER 656
                 +   E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  
Sbjct: 1   MFKEANKMTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH 60

Query: 657 VAKTSDVVKEGDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           +   S+VVK GD V   +        +D G   LS + ++
Sbjct: 61  IESPSEVVKVGDEVEAYVTKIEFDEENDSGAYILSKRQLE 100


>gi|332299900|ref|YP_004441821.1| RNA binding S1 domain protein [Porphyromonas asaccharolytica DSM
           20707]
 gi|332176963|gb|AEE12653.1| RNA binding S1 domain protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 598

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I     V   ++ +V    ++G FV      DGL+HIS LS  R V   ++ VK 
Sbjct: 376 DPWETIEQRFPVGSNHEARVRNFTNYGVFVELDEGIDGLIHISDLSWTRKVKHPNEFVKV 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V++L+ D +  ++ L  K V +N    
Sbjct: 436 GQMIEVQVLEIDKENRRLSLGHKQVTENPWDE 467



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I++        +   +E    KVN +    V      +      ++  + I   
Sbjct: 159 QIDVRPIKDY----DAFVDKTMEFKIVKVNPEYRNVVVSHKVLIEAELEQQK--KEIISK 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +GAFV   G  DGL+HI+ LS  R+   S+VV   + + V +LD
Sbjct: 213 LEKGQVLEGVVKGITSYGAFVDL-GGVDGLIHITDLSWGRIGDPSEVVSLDEKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 272 FDEEKTRIALGLKQLMPHPW 291



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G +      V++D+   V I      +   A            ++    +   I  G+V
Sbjct: 249 WGRIGDPSEVVSLDEKINVVILDFDEEKTRIALGLKQLMPHPWDALDPNLKEGDIIHGRV 308

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GL+H+S++S  + +    + +  G  V   +L  D +  K+ L
Sbjct: 309 VVITDYGAFVEVIPGVEGLIHVSEMSWTQHLRSAQEFLTVGQEVDAVVLMLDREDRKMSL 368

Query: 686 SMKVVDQNTGKPI 698
            +K +  +  + I
Sbjct: 369 GLKQLKPDPWETI 381


>gi|227891617|ref|ZP_04009422.1| RNA binding protein [Lactobacillus salivarius ATCC 11741]
 gi|227866533|gb|EEJ73954.1| RNA binding protein [Lactobacillus salivarius ATCC 11741]
          Length = 132

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G++  +  +GAFV       GL+HIS+     V    + +K G  V V ++D D
Sbjct: 5   IGMIIEGRITGIQPYGAFVSLDNRTQGLIHISECHHGYVDNIRNFLKVGQMVRVMIIDID 64

Query: 679 D-RGKIKLSMKVVDQ 692
           +  GKI LS++ +++
Sbjct: 65  EYTGKISLSIRCLEK 79


>gi|50289563|ref|XP_447213.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526522|emb|CAG60146.1| unnamed protein product [Candida glabrata]
          Length = 1135

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 631 MDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           M FG FV     +    +GLVHIS+L   +V   SDVVK+G TV+VK+      GKI LS
Sbjct: 192 MPFGCFVQILHLKKECGEGLVHISELCKNKVRHPSDVVKQGQTVYVKISKIMTNGKISLS 251

Query: 687 MKVVDQNTGKP 697
           M  +DQ +GK 
Sbjct: 252 MINIDQVSGKE 262


>gi|210608535|ref|ZP_03287908.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787]
 gi|210152986|gb|EEA83992.1| hypothetical protein CLONEX_00087 [Clostridium nexile DSM 1787]
          Length = 222

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +++D      + S+     E  R+    +    EV  +  G V  +  +GAF+       
Sbjct: 86  IDVDQANNRLVLSARELLKEKERKEKEKLLASVEVGSVLTGTVETLQTYGAFIRLENGLS 145

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GLVH+SQ+  +R+   +DV+K G+ V VK++   D GKI LS+K +
Sbjct: 146 GLVHVSQICEKRIKTPADVLKTGEEVNVKVIGIKD-GKISLSIKAL 190


>gi|313886404|ref|ZP_07820126.1| putative ribosomal protein S1 [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924150|gb|EFR34937.1| putative ribosomal protein S1 [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 598

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I     V   ++ +V    ++G FV      DGL+HIS LS  R V   ++ VK 
Sbjct: 376 DPWETIEQRFPVGSNHEARVRNFTNYGVFVELDEGIDGLIHISDLSWTRKVKHPNEFVKV 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V++L+ D +  ++ L  K V +N    
Sbjct: 436 GQMIEVQVLEIDKENRRLSLGHKQVTENPWDE 467



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I++        +   +E    KVN +    V      +      ++  + I   
Sbjct: 159 QIDVRPIKDY----DAFVDKTMEFKIVKVNPEYRNVVVSHKVLIEAELEQQK--KEIISK 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +GAFV   G  DGL+HI+ LS  R+   S+VV   + + V +LD
Sbjct: 213 LEKGQVLEGVVKGITSYGAFVDL-GGVDGLIHITDLSWGRIGDPSEVVSLDEKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 272 FDEEKTRIALGLKQLMPHPW 291



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G +      V++D+   V I      +   A            ++    +   I  G+V
Sbjct: 249 WGRIGDPSEVVSLDEKINVVILDFDEEKTRIALGLKQLMPHPWDALDPNLKEGDIIHGRV 308

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GL+H+S++S  + +    + +  G  V   +L  D +  K+ L
Sbjct: 309 VVITDYGAFVEVIPGVEGLIHVSEMSWTQHLRSAQEFLTVGQEVDAVVLMLDREDRKMSL 368

Query: 686 SMKVVDQNTGKPI 698
            +K +  +  + I
Sbjct: 369 GLKQLKPDPWETI 381


>gi|257869273|ref|ZP_05648926.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
 gi|257803437|gb|EEV32259.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
          Length = 727

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  V+DFGAFV     +DGLVH+S+LS   V    DVV  GD V V +   D  +G
Sbjct: 655 LMGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRNFVKHPKDVVAVGDIVTVWIEQVDTTKG 714

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+M  VD   GK
Sbjct: 715 RISLTM--VDPTHGK 727


>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
 gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
           chabaudi]
          Length = 227

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 21/238 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVG---LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             + ++  R+DGR  +  R I   +G   +     G + +  G+T+ +  +        Q
Sbjct: 5   EYINEEGYRLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYI--------Q 56

Query: 362 YVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               L     +          P    +  +               R     ++       
Sbjct: 57  GPTELKKSDDKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKN 116

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I   I E DG    A +    LAL+DAG+ I   ++  ++  +++     I+ D +
Sbjct: 117 SEINIFLYIIERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNQ----IIVDGN 172

Query: 481 GDEDHLGHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
             E + G  +  +        I  ++ D +   +  +I    +Q      ++I   M 
Sbjct: 173 QLEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNIGGVMK 227



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 72/191 (37%), Gaps = 15/191 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG      G T +L+ +     LK   D   +  +     + V      Y +R+ +  +
Sbjct: 38  ADGFAFYEIGNTKILSYIQGPTELKKSDDKCSIKCDVFLSPFNV------YDKRKKKTKD 91

Query: 87  N-EILISRMIDRSIRP-LFSKCYKN-ETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
           N    IS  I       +    YKN E  + + +++ D        ++     AL+ +G+
Sbjct: 92  NITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKH--AAINTCILALIDAGI 149

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLSEDVV 200
             +  +    V Y+  Q +++    E       L + +      ++++E +A ++  D+ 
Sbjct: 150 AIKYFISACSVLYLQNQIIVDGNQLEINSGSPELTMVIELNTHKIILLEFDA-EVPIDIF 208

Query: 201 LDAIIFGHNEC 211
              +    + C
Sbjct: 209 ESMVQTCIDSC 219


>gi|46199688|ref|YP_005355.1| S1 domain-containing protein [Thermus thermophilus HB27]
 gi|46197314|gb|AAS81728.1| S1 domain protein [Thermus thermophilus HB27]
          Length = 142

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           FGAFV   G   GLVHISQ++ E V    D + EGD V V +   D +G++ LS+K +
Sbjct: 36  FGAFVELAGGEQGLVHISQIAHEYVTNVRDYLNEGDIVQVLIKGRDAKGRLDLSIKDL 93


>gi|325285094|ref|YP_004260884.1| RNA-binding S1 domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324320548|gb|ADY28013.1| RNA binding S1 domain protein [Cellulophaga lytica DSM 7489]
          Length = 610

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 180 QIDVKPIRDYDQYVGKNMEFKV----VKINQEFKNVVVSHKALIEADIE--EQKKEIIGQ 233

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  R+   ++VV+    + V +LD
Sbjct: 234 LEKGQVLEGVVKNITSYGVFIDL-GGVDGLIHITDLSWSRINHPNEVVELDQKMNVVILD 292

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K ++++  + +
Sbjct: 293 FDDNKSRIQLGLKQLEKHPWEAL 315



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++++  +V    KG+VV + D+GAF+      +GLVH+S++S    +    D VK
Sbjct: 309 KHPWEALSEDMKVGDKVKGKVVVIADYGAFIEVAEGVEGLVHVSEMSWSTHLRSAQDFVK 368

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD +  ++L  D D  K+ L +K +  +    I
Sbjct: 369 VGDEIEAQILTLDRDDRKMSLGIKQLTPDPWTDI 402



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V+  +KG V    +FG FV      DGL++IS LS  +++   S+ V  
Sbjct: 397 DPWTDITSKYPVHSRHKGIVRNFTNFGVFVEMEEGIDGLIYISDLSWTKKIKHPSEFVTV 456

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+T+ V++L+ D D  K+ L  K   +N  
Sbjct: 457 GETLEVEVLELDVDARKLSLGHKQTTENPW 486


>gi|255019084|ref|ZP_05291210.1| general stress protein 13 [Listeria monocytogenes FSL F2-515]
          Length = 104

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G+V  +  +GAFV    +  GLVHIS+++   V    D ++ G  V VK+LD 
Sbjct: 5   KVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64

Query: 678 DDRGKIK 684
           D+R KIK
Sbjct: 65  DERKKIK 71


>gi|313674771|ref|YP_004052767.1| tex-like protein [Marivirga tractuosa DSM 4126]
 gi|312941469|gb|ADR20659.1| Tex-like protein [Marivirga tractuosa DSM 4126]
          Length = 748

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V     G +  + +FGAFV     +DGLVH+S ++ + V+  ++VV     V V +L+ 
Sbjct: 635 KVGMKLPGIITNITNFGAFVDVGVHQDGLVHVSHIADKFVSNPAEVVNVAQKVEVTVLEV 694

Query: 678 DD-RGKIKLSMK 688
           D+ R +I  SMK
Sbjct: 695 DEGRKRISFSMK 706


>gi|333030297|ref|ZP_08458358.1| Tex-like protein [Bacteroides coprosuis DSM 18011]
 gi|332740894|gb|EGJ71376.1| Tex-like protein [Bacteroides coprosuis DSM 18011]
          Length = 713

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A      +      +  +   I  G V  + +FGAFV      +G
Sbjct: 603 DIMSELKKPGRDPRKAIKVFQFDQNIRTIEDLKEGMILPGIVGNITNFGAFVDLGIKENG 662

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           L+H+S+++ E V+  +  V     ++VK+L  D +R +I+LS+K ++QN
Sbjct: 663 LIHLSEMANEFVSDPTQYVSIHQQIYVKVLSVDLERKRIQLSLKNIEQN 711


>gi|146318425|ref|YP_001198137.1| hypothetical protein SSU05_0770 [Streptococcus suis 05ZYH33]
 gi|145689231|gb|ABP89737.1| Unknown protein [Streptococcus suis 05ZYH33]
          Length = 120

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G+V ++  FGAF+   G  DGLVH+++LS ER       V  G+ V VK+L  D+  G+
Sbjct: 2   TGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGR 60

Query: 683 IKLSMKVVDQNTG 695
           + LS+K       
Sbjct: 61  VSLSLKATQPGPW 73


>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
          Length = 138

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 9/137 (6%)

Query: 417 AQFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +P++ + I  E+ ++DGS+    V  ++LAL+DAG+P+ + +   +  L   G+  + 
Sbjct: 1   ELYPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGIPLKEYIIACSASL---GNGDVP 57

Query: 476 LSDISGDEDHLGHMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           L D+S  E+ LG  +  +A       IT ++M  K      + +   L +A  G   I  
Sbjct: 58  LIDVSHLEESLGGSNLTIAALPLSGQITVLEMSQK---FHIDHLPQVLNEAMNGCQQIYK 114

Query: 534 EMSKVLSESRLQLGEFT 550
            +   +     ++G  +
Sbjct: 115 ILDSAVKTHLTEVGTIS 131


>gi|329117363|ref|ZP_08246080.1| Tex-like protein N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907768|gb|EGE54682.1| Tex-like protein N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 710

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+   ++   + +G + ++ I+        ++ D+    +    + +++  R        
Sbjct: 582 AVNKKEMAEKLSIGFETLKDIISDLLKPGRDLRDEFQTPVLRQDVLDLKDLR-------- 633

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
              + +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V + 
Sbjct: 634 ---IGQKLEGTVRNVVDFGAFVDVGVHEDGLIHISEMSKTFVNHPSQVVSVGDLVTVWVS 690

Query: 676 DFD-DRGKIKLSMKVVDQN 693
             D DR K+ LS+   +++
Sbjct: 691 KIDLDRHKVNLSLLAPNES 709


>gi|315641440|ref|ZP_07896512.1| general stress protein 13 [Enterococcus italicus DSM 15952]
 gi|315482728|gb|EFU73252.1| general stress protein 13 [Enterococcus italicus DSM 15952]
          Length = 128

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M        ++ ++ +G +  +  +GAFV       GL+H+S++ +       +++K G 
Sbjct: 1   MKEGGNMTYKIGQVIEGTITGIQPYGAFVSLDANTQGLIHVSEIQSGYTKNIHELLKVGQ 60

Query: 669 TVWVKLLDFDD-RGKIKLSMKVV 690
            V V+++D D    KI LS + +
Sbjct: 61  KVTVQVIDIDAFSKKISLSRRTL 83


>gi|301300865|ref|ZP_07207038.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851529|gb|EFK79240.1| S1 RNA binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 131

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G++  +  +GAFV       GL+HIS+     V    + +K G  V V ++D D
Sbjct: 5   IGMIIEGRITGIQPYGAFVSLDNRTQGLIHISECHHGYVDNIRNFLKVGQMVRVMIIDID 64

Query: 679 D-RGKIKLSMKVVDQ 692
           +  GKI LS++ +++
Sbjct: 65  EYTGKISLSIRCLEK 79


>gi|295398556|ref|ZP_06808588.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
 gi|294973157|gb|EFG48952.1| general stress protein 13 [Aerococcus viridans ATCC 11563]
          Length = 128

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +  + +G+V  +  +G FV       GL+HIS+++   V+   D    G  + VK++D 
Sbjct: 9   HIGDVVEGEVTGLQPYGVFVQLDEDHQGLIHISEINHGYVSNVEDKFTIGQKLKVKIIDI 68

Query: 678 DD-RGKIKLSMKVV 690
           D+  GK+ LS++ +
Sbjct: 69  DEFTGKMSLSIRAL 82


>gi|168335161|ref|ZP_02693268.1| hypothetical protein Epulo_08978 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 131

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +I +G V  +  FGAF+    + +GLVHIS ++   +   +D +K GD V VK+L  
Sbjct: 6   EVGQILEGTVTGIKPFGAFISLPNSYNGLVHISHITHGYLENIADAIKIGDVVKVKVLTV 65

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D    KI LS+K   +   + 
Sbjct: 66  DLTNNKISLSIKEALEKPKQE 86


>gi|307151161|ref|YP_003886545.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981389|gb|ADN13270.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
          Length = 328

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 185 RALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 243

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 244 NDELKVMIIDLDAERGRISLSTKQLEPEAG 273



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV   S+V++  +T    +L D ++
Sbjct: 34  DIVAGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDDPSEVLQPNETREFFILTDENE 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 94  DGQLTLSIRRIE 105


>gi|242216327|ref|XP_002473972.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726916|gb|EED80851.1| predicted protein [Postia placenta Mad-698-R]
          Length = 766

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTE-RVAKTSDV 663
           +  R + + P + KIY G+V  + +FGAFV   G     +G+VH+S +    R    +D+
Sbjct: 195 DRARPLDERPVLFKIYNGRVNGMKEFGAFVQLEGVVGRVEGMVHVSNIQQGARTNSAADL 254

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +  G +V VK++      ++ LSMK VDQ TG+ +
Sbjct: 255 LTRGQSVKVKVMSVAGT-RVGLSMKDVDQATGRDL 288


>gi|150008009|ref|YP_001302752.1| RNA-binding protein [Parabacteroides distasonis ATCC 8503]
 gi|149936433|gb|ABR43130.1| putative RNA binding protein with S1 RNA-binding domain
           [Parabacteroides distasonis ATCC 8503]
          Length = 708

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++               A +      +  +  ++  G V  + +FG FV      +
Sbjct: 602 LDIMEELDKPGRDPRQTIQVFAFDPTVKTIEDLKEGQVLPGIVNNITNFGCFVDVGIKEN 661

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVHIS+L+   V+  + VV     V VK+L  D  R +++LSMK +
Sbjct: 662 GLVHISELADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMKGI 708


>gi|261884195|ref|ZP_06008234.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 172

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     +   +   I KG V  + +FGAFV   GA +GL+H    S +R  K  D++K G
Sbjct: 49  KPFDEFSSKFKEGDIVKGVVTTLTNFGAFVRV-GALEGLLHNEDSSWDRNDKCKDILKTG 107

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           D + VK++  DD+  KI LS K +  + 
Sbjct: 108 DEIDVKIIKIDDKNQKISLSQKDLKDSP 135



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 647 VHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +HIS++S ++ +    D +KE + + V++++ D +  ++++S+K +    
Sbjct: 1   MHISEISWDKNIKNPKDFIKENEELDVEVIEIDVNERRLRVSLKNLLPKP 50


>gi|114565663|ref|YP_752817.1| RNA binding S1 [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336598|gb|ABI67446.1| RNA binding S1 [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 152

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G+V  +  FGAF+   G   GLVHIS+++   V    D +KEG++V VK+L+   + 
Sbjct: 13  IMEGKVQGITKFGAFIELPGGVVGLVHISEIADTYVKDVKDFIKEGESVKVKVLNVAGK- 71

Query: 682 KIKLSMKVVDQNT 694
           KI LS+K V    
Sbjct: 72  KIGLSIKQVSPPP 84


>gi|297616324|ref|YP_003701483.1| RNA binding S1 domain protein [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144161|gb|ADI00918.1| RNA binding S1 domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 127

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           I +G V  +  FGAFV     + GLVHIS+++   V    D ++EG  V VK+L+  D G
Sbjct: 13  IVEGVVQGITRFGAFVELPDGKVGLVHISEIADTYVKDVKDFLQEGQRVKVKVLNVADNG 72

Query: 682 KIKLSMKVVDQNT 694
           K+ LS++   +  
Sbjct: 73  KVGLSVRQAKEKE 85


>gi|291547610|emb|CBL20718.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5]
          Length = 300

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +  D      + S+     E A    R+     +V  + +G V  +  +GAFV       
Sbjct: 161 IEADKAKKRLVLSAREILRERAEVEKRNKISNIQVGFVTEGTVESLQPYGAFVELGNGVS 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GLVHISQ+  +R+ K S+V+  GD V VK++   D GK+ LS+K       K +
Sbjct: 221 GLVHISQICEKRIRKPSEVLSVGDKVKVKVIAIKD-GKLSLSIKEASDLMAKEV 273



 Score = 45.3 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++     + +     +   I  G VV V + G  +      +G + + + S     
Sbjct: 1   MAESMKDFERELEASFKRIDEGDIISGTVVSVDESGVVLDLKFYAEGFIPVEEFSRVPGF 60

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              + V+ GD V   +L  DD +G I LS 
Sbjct: 61  NIKEAVQPGDEVQAMVLRRDDGQGNILLSR 90


>gi|228470785|ref|ZP_04055633.1| 30S ribosomal protein S1 [Porphyromonas uenonis 60-3]
 gi|228307458|gb|EEK16463.1| 30S ribosomal protein S1 [Porphyromonas uenonis 60-3]
          Length = 598

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I     V   ++ +V    ++G FV      DGL+HIS LS  R V   ++ VK 
Sbjct: 376 DPWETIEQRFPVGSNHEARVRNFTNYGVFVELDEGIDGLIHISDLSWTRKVKHPNEFVKV 435

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  + V++L+ D +  ++ L  K V +N    
Sbjct: 436 GQMIEVQVLEIDKENRRLSLGHKQVTENPWDE 467



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    I++        +   +E    KVN +    V      +      ++  + I   
Sbjct: 159 QIDVRPIKDY----DAFVDKTMEFKIVKVNPEYRNVVVSHKVLIEAELEQQK--KEIISK 212

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +GAFV   G  DGL+HI+ LS  R+   S+VV   + + V +LD
Sbjct: 213 LEKGQVLEGVVKGITSYGAFVDL-GGVDGLIHITDLSWGRIGDPSEVVSIDEKINVVILD 271

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD ++ +I L +K +  +  
Sbjct: 272 FDEEKTRIALGLKQLMPHPW 291



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G +      V+ID+   V I      +   A            ++    +   I  G+V
Sbjct: 249 WGRIGDPSEVVSIDEKINVVILDFDEEKTRIALGLKQLMPHPWDALDPNLKEGDIVHGRV 308

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAFV      +GL+H+S++S  + +    + +  G  V   +L  D +  K+ L
Sbjct: 309 VVITDYGAFVEVIPGVEGLIHVSEMSWTQHLRSAQEFLTVGQEVDAVVLMLDREDRKMSL 368

Query: 686 SMKVVDQNTGKPI 698
            +K +  +  + I
Sbjct: 369 GLKQLKPDPWETI 381


>gi|187779599|ref|ZP_02996072.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC
           15579]
 gi|187773224|gb|EDU37026.1| hypothetical protein CLOSPO_03195 [Clostridium sporogenes ATCC
           15579]
          Length = 638

 Score = 80.3 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQV 627
            G VE+    + + D   V I        + A        +  +S+     +  I  G+V
Sbjct: 512 WGRVERPEDALKVGDKIKVYILDIDKENKKLALSIKKLIEDPWKSVELKYPIGNIVLGKV 571

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
           V+   FGAF+      DGLVHIS++S +R+ K  + +  G  V  K+L+ +    +I LS
Sbjct: 572 VRFASFGAFIELEPGVDGLVHISKISNKRIDKPEEELTLGKEVKAKILEVNSAEKRIALS 631

Query: 687 MKVVDQ 692
           +K V++
Sbjct: 632 IKDVEE 637



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 562 QIRNVIGM--GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +  N+IG+  G      I+++   K+N +D       +          E +        V
Sbjct: 250 KNSNIIGVTAGASTPDWIIKEAVNKMNNND-------NIIEVSKNEMLEYMNEKEQQIVV 302

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
            K+ KG +V + +   FV      +G++   +++    +   +  K GD +  K++   +
Sbjct: 303 GKVVKGTIVSLNENELFVDLNYKSEGIIPKEEVTLNEESILKEAFKVGDEIEAKIVRIRN 362

Query: 679 DRGKIKLSMKVVDQN 693
           + G + LS+K +D+ 
Sbjct: 363 EDGYVVLSLKELDRE 377


>gi|257887236|ref|ZP_05666889.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257823290|gb|EEV50222.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
          Length = 726

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I  ++   +  S  +LG      ++  +  +++   + +G + +  I+            
Sbjct: 573 IAKDILMTVHLSEKELGTEEAVEKLTRLSAEKLAESLSVGEETLADILA----------- 621

Query: 591 GTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           G  K       E+ A   R  + S+ D+    ++  G V  V+DFGAFV     +DGLVH
Sbjct: 622 GLTKPGRDMRDEMPAPLLRTDVLSMEDLKPGMEL-TGTVRNVIDFGAFVDIGVKQDGLVH 680

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           IS+LS + V   +DVV  GD V   +   D  +G+I L+M
Sbjct: 681 ISKLSKKFVKHPTDVVSVGDIVTAWIEQVDTKKGRISLTM 720


>gi|225010709|ref|ZP_03701178.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-3C]
 gi|225005080|gb|EEG43033.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-3C]
          Length = 609

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 180 QIDVKPIRDYDQYVGKTMEFKV----VKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 233

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGLVHI+ LS  R+   ++VV+    + V +LD
Sbjct: 234 LEKGQVLEGVVKNITSYGVFIDL-GGVDGLVHITDLSWSRINHPNEVVELDQKLNVVILD 292

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K ++++  + +
Sbjct: 293 FDDNKSRIQLGLKQLEKHPWEAL 315



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    +++D   +    KG+VV + D+GAF+      +GL+H+S++S    +    D VK
Sbjct: 309 KHPWEALSDTIAIGDKVKGKVVVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFVK 368

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D +  K+ L +K + Q+    I
Sbjct: 369 VGDEVEAVVLTLDREDRKMSLGIKQLTQDPWTDI 402



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   +KG V    +FG FV      DGL++IS LS  +++   S+ V 
Sbjct: 396 QDPWTDITTKYPVASKHKGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFVA 455

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GDT+ V++L+ D  G+ + L  K    N  
Sbjct: 456 VGDTLEVEVLELDVDGRKLSLGHKQTTVNPW 486


>gi|224369571|ref|YP_002603735.1| RpsA2 [Desulfobacterium autotrophicum HRM2]
 gi|223692288|gb|ACN15571.1| RpsA2 [Desulfobacterium autotrophicum HRM2]
          Length = 605

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 607 REMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           RE  R+ T    E  K+ +G V  + ++G FV   G  DGL+HI+ +S  RV   S++  
Sbjct: 217 RETARADTLEAIETGKVMEGIVKNITEYGVFVDL-GGVDGLLHITDISWGRVKHPSELFS 275

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             D + VK+L +D ++ ++ L +K +  +  
Sbjct: 276 VADKINVKILSYDLEKERVSLGLKQLTPDPW 306



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++ +  +V     G V  + DFG FV      +GLVH+S++S E++   +     G
Sbjct: 478 DPWETVEERYKVGTEISGIVTNITDFGVFVELEEGIEGLVHVSEISKEKIKTPAGHYAIG 537

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           DT+  ++++ + D  +I LS+K +D++  + I+
Sbjct: 538 DTLTARVMNINSDERRIGLSIKRLDEDEDETIL 570



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +  D   V     G+VV + D+GAFV      +GL+H+S++S  R V   S +V  
Sbjct: 304 DPWTTAKDKYPVGSKVLGKVVSLTDYGAFVELEEGVEGLIHVSEMSWTRKVRHPSKIVSV 363

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G+ V   +LD   D  +I L +K   +N  + I
Sbjct: 364 GEEVEAVVLDLKPDNRRISLGIKQTVENPWEVI 396



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
               I++   V  + +G++  + DFG F+      DGLVHIS +S  +R+   S+  K+ 
Sbjct: 392 PWEVISEKYPVGTVIEGKIKNITDFGLFIGIDDDIDGLVHISDISWTKRIKHPSEAYKKN 451

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           D V   +LD D    +  L +K +  +  + +
Sbjct: 452 DVVQAVVLDIDKASERFSLGIKQIQPDPWETV 483


>gi|210620543|ref|ZP_03292091.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
 gi|210155257|gb|EEA86263.1| hypothetical protein CLOHIR_00034 [Clostridium hiranonis DSM 13275]
          Length = 712

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 104/261 (39%), Gaps = 24/261 (9%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S  A +  +S +L++    IS  VA   +   ++  +F   S+I         
Sbjct: 472 VVEDAVNSVGADLNTASASLLEHVAGISSAVAKNIVAYREENGEFKSRSEIKKVSKLGPK 531

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    I   +  +   G+                L +L    + +      L +
Sbjct: 532 AFTQCAGFLR-IPEAKNPLDNTGVHPE-----SYATCEKMLTVLGYSKEDIK--NGNLKD 583

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              +V+  A+   ++   +  G   I+ I+ E      +  +DG   I  + +  ++  R
Sbjct: 584 IDEKVK--AVGLTKLAEELESGVPTIKDIIVEIKRPGRDPREDGMKPILRTDVLSMDDLR 641

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +             + KG V  V+DFGAFV      DGLVH  ++   +V    +VV  G
Sbjct: 642 D-----------GMVLKGTVRNVVDFGAFVDIGVKTDGLVHKKEMGV-KVNDPMEVVSVG 689

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           D + VK+++ D ++ +I LSM
Sbjct: 690 DIIDVKVVNVDKEKNRIALSM 710


>gi|90961417|ref|YP_535333.1| polyribonucleotide nucleotidyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90820611|gb|ABD99250.1| Polyribonucleotide nucleotidyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 136

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I +G++  +  +GAFV       GL+HIS+     V    + +K G  V V ++D D
Sbjct: 5   IGMIIEGRITGIQPYGAFVSLDNRTQGLIHISECHHGYVDNIRNFLKVGQMVRVMIIDID 64

Query: 679 D-RGKIKLSMKVVDQ 692
           +  GKI LS++ +++
Sbjct: 65  EYTGKISLSIRCLEK 79


>gi|239616650|ref|YP_002939972.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505481|gb|ACR78968.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 121

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V  I +G+V  V  +GAFV   G  +G +HIS++S   V    D +K G  +  K+
Sbjct: 1   MSVKVGNIVQGKVTAVRKYGAFVTLEGGEEGFIHISKVSKGYVKNIDDYLKVGQEITAKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           L     GK +LS+K    N G+ 
Sbjct: 61  LGTTKDGKWELSIKDAGGNQGEE 83


>gi|150009217|ref|YP_001303960.1| 30S ribosomal protein S1 [Parabacteroides distasonis ATCC 8503]
 gi|255015824|ref|ZP_05287950.1| 30S ribosomal protein S1 [Bacteroides sp. 2_1_7]
 gi|256841773|ref|ZP_05547279.1| ribosomal protein S1 [Parabacteroides sp. D13]
 gi|262384104|ref|ZP_06077240.1| 30S ribosomal protein S1 [Bacteroides sp. 2_1_33B]
 gi|298376996|ref|ZP_06986950.1| ribosomal protein S1 [Bacteroides sp. 3_1_19]
 gi|301311010|ref|ZP_07216939.1| ribosomal protein S1 [Bacteroides sp. 20_3]
 gi|149937641|gb|ABR44338.1| 30S ribosomal protein S1 [Parabacteroides distasonis ATCC 8503]
 gi|256736667|gb|EEU49995.1| ribosomal protein S1 [Parabacteroides sp. D13]
 gi|262295002|gb|EEY82934.1| 30S ribosomal protein S1 [Bacteroides sp. 2_1_33B]
 gi|298265980|gb|EFI07639.1| ribosomal protein S1 [Bacteroides sp. 3_1_19]
 gi|300831073|gb|EFK61714.1| ribosomal protein S1 [Bacteroides sp. 20_3]
          Length = 596

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   +     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKI----VKINQEFKNVVVSHKALIEAELEQQK--KDIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   ++V+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSHPEEIVQLDQKINVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWENIEERFPVGSRHAAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GAEIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDALDTNLKVGDKVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWTQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD +   +L  D D  K+ L +K +  +  + I
Sbjct: 347 GDEIEAVILTLDRDERKMSLGIKQLKADPWENI 379



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  +  ++  G V  +      V+     DG+V +S+            +K GD V V +
Sbjct: 41  NTVKDKEVVMGTVTSMNKREVVVNIGFKSDGVVPMSEFRYNPD------LKIGDEVEVYI 94

Query: 675 LDF-DDRGKIKLSMK 688
               D +G++ LS K
Sbjct: 95  ESQEDKKGQLILSHK 109


>gi|329766870|ref|ZP_08258398.1| hypothetical protein HMPREF0428_00095 [Gemella haemolysans M341]
 gi|328837595|gb|EGF87220.1| hypothetical protein HMPREF0428_00095 [Gemella haemolysans M341]
          Length = 722

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 17/135 (12%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           A+   ++   IG+G + +  I++     +                    A+ +++S    
Sbjct: 598 AVDKKELAEKIGVGLETLEDIIKDLKQPL-------------RDERESFAKPLLKSDILT 644

Query: 617 PEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            +  +I     G V  +  FGAF+     +D +VHIS++S   +    DV+  G  V V 
Sbjct: 645 IDDLQIGVKLAGTVRNITQFGAFIDIGLKKDAMVHISKISKNYIKNPLDVLSVGQIVDVY 704

Query: 674 LLDFD-DRGKIKLSM 687
           ++D D +RG++ L+M
Sbjct: 705 VIDVDKERGRVALAM 719


>gi|224131510|ref|XP_002321102.1| predicted protein [Populus trichocarpa]
 gi|222861875|gb|EEE99417.1| predicted protein [Populus trichocarpa]
          Length = 299

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF------CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           V +I+ G+V  V D+GAF+H            GLVH+S++S + V    D++  GD V V
Sbjct: 101 VGEIFAGRVGSVEDYGAFIHMRFPDGSLYHLTGLVHVSEVSWDLVQDVRDILNVGDEVTV 160

Query: 673 KLLDFDD-RGKIKLSMKVVDQNT 694
           K++D D  + +I LS+K ++++ 
Sbjct: 161 KIIDIDQGKSRITLSIKQLEEDP 183


>gi|322387834|ref|ZP_08061442.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
 gi|321141336|gb|EFX36833.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
          Length = 709

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 18/230 (7%)

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LS ++G    +     K    +  IT+     K+  +       A    +    + + 
Sbjct: 487 ALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESNNIL 546

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI-VEQTGAKVNIDDDGT 592
           + + V  E+   + E   R+         I+++       ++ I +++   ++++  +  
Sbjct: 547 DNTGVHPENYAAVKELFKRL--------DIKDLNEEAQAKLKSISIKEMAQELDLGQETL 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARD 644
             I +  L      R+   +     +V  I         +G V  V+DFGAFV      D
Sbjct: 599 KDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLKVGQKLEGVVRNVVDFGAFVDIGIHED 658

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GL+HIS +S + +   S VV  GD V V +   D  R K+ LS+   D++
Sbjct: 659 GLIHISHMSKKFIKHPSQVVSVGDLVTVWVKKIDVQREKVNLSLLAPDES 708


>gi|304439742|ref|ZP_07399640.1| S1 RNA binding domain protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371729|gb|EFM25337.1| S1 RNA binding domain protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 691

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +++ N +G+G   +R I+E+                       E   +      +  ++ 
Sbjct: 572 EELANELGVGLFTLRDILEELKK----------PGRDPREDLDEVFLKSDILTIEDLKIG 621

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + KG V  V+DFG FV      +GL+HIS LS   V    D+V  GD V V+++  D  
Sbjct: 622 DVLKGTVRNVVDFGCFVDIGLHSEGLIHISNLSKGFVKHPKDIVSVGDIVNVEVISIDIK 681

Query: 680 RGKIKL 685
           R ++ L
Sbjct: 682 RERVGL 687


>gi|332296805|ref|YP_004438727.1| RNA binding S1 domain protein [Treponema brennaborense DSM 12168]
 gi|332179908|gb|AEE15596.1| RNA binding S1 domain protein [Treponema brennaborense DSM 12168]
          Length = 362

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 11/208 (5%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPR 552
             G  +G       +      + ++  A +       H+  E+             F P 
Sbjct: 58  FMGDKNGEMRFTAKISGDKADKTVLENAYKSGIPVEGHVEKEIKGGFEIKIGTSRAFCPY 117

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
            ++     +     IG        I E      NI     V    S    +   +E    
Sbjct: 118 SQMGFRQKESPDFYIGKSLPF--KIQEYKENGRNILVSNRVMGEESYEENLAKLQE---- 171

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                ++     G +  V  +GAFV   G R  L+ +S++S  RV     V+ EG  +  
Sbjct: 172 ---TLKIGSTVAGVIEAVQSYGAFVDIGGFR-ALLPVSEISHSRVDDIRSVLSEGQKIEA 227

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +++  D +  +I LS+K ++++    +V
Sbjct: 228 QIIKLDWNNERISLSLKALERDPWDDVV 255



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           R+    +      +  + G V ++ +FG FV      DGLVH+S+L    R      + K
Sbjct: 248 RDPWDDVVRKYPADSKHAGTVSRIAEFGLFVALEPGVDGLVHVSELEDANRNTNLRKLYK 307

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            GD + V +   D   K +LS+K
Sbjct: 308 IGDKLSVVVKAVDAEQK-RLSLK 329


>gi|115467950|ref|NP_001057574.1| Os06g0343100 [Oryza sativa Japonica Group]
 gi|54290955|dbj|BAD61636.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113595614|dbj|BAF19488.1| Os06g0343100 [Oryza sativa Japonica Group]
          Length = 1084

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKT 660
               +   R     P + ++ +G+V  + D G FV       R+GLVH+S++   R+A  
Sbjct: 113 CGKDKAEERVRDGDPGLYQVCRGKVTGLADAGCFVRLDDARGREGLVHVSEMPGRRIA-- 170

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              VK G  V+VK++    R  + LSM+ VDQ+TGK ++
Sbjct: 171 ---VKRGQEVFVKIVSVQGRN-LGLSMRDVDQDTGKDLL 205


>gi|89890788|ref|ZP_01202297.1| 30S ribosomal protein [Flavobacteria bacterium BBFL7]
 gi|89516933|gb|EAS19591.1| 30S ribosomal protein [Flavobacteria bacterium BBFL7]
          Length = 619

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V    + +       E  + I   
Sbjct: 183 QIDVKPIRDY----DAYVDKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKKEIISR 236

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   ++VV+   T+ V +LD
Sbjct: 237 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEVVELDQTLNVVILD 295

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD D+ +I+L +K ++ +  + +
Sbjct: 296 FDEDKSRIQLGLKQLEPHPWEAL 318



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
               +++D  +     KG+VV + D+GAFV      +GL+H+S++S    +    D VK 
Sbjct: 313 HPWEALSDKIKPGDNVKGKVVVIADYGAFVEIEEGVEGLIHVSEMSWSTHLRSAGDFVKV 372

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GDTV  ++L  D +  K+ L MK +  +    I
Sbjct: 373 GDTVDAQVLTIDREDRKMSLGMKQLHPDPWTDI 405



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGL++IS LS  +++   S+    
Sbjct: 400 DPWTDITTKYPVGSRHTGVVRNFTNFGVFVELEEGVDGLIYISDLSWTKKIKHPSEFCAV 459

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD + + +L+ D  G+ + L  K    N  
Sbjct: 460 GDKLDIVVLELDVEGRKLSLGHKQTMDNPW 489


>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
          Length = 269

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 4/160 (2%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E  +   +    
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVH-GPAEGRRGDATGGAA 70

Query: 370 QRNDFMMHY--NFLPCATGEVSRMGAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLRIV 426
                ++    N    A  +  R    S ++        R A    L        T+ I 
Sbjct: 71  GSAGAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIH 130

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             +  SDGS   A V   +LAL+DAG+P+   + G   G+
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTSGM 170



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           S G+     G T +L +V      +                E    V    G   +R + 
Sbjct: 37  SSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSAGAVVEVDVNVAGFAGVDRKRRAG 96

Query: 84  PTEN-EILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALML 140
            ++     ++ ++  + +          +   + ++V+  D   S    ++ A + AL+ 
Sbjct: 97  GSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSVLSSDG--SLLAAAVNACTLALVD 154

Query: 141 SGLPFEGPVVGAQVDYINGQYVL-NPRLD----------EDQGSLDLFVSGTQDAVLMVE 189
           +G+P  G + G             +P  D           ++  L     GT  AV + E
Sbjct: 155 AGIPMPGLLCGCTSGMSGSASTPRDPNNDTLDPLLDLSLPEEQELPFLTVGTTTAVPVGE 214

Query: 190 LEANQLSEDVVLDAI 204
                  ED +  A+
Sbjct: 215 AAMINEDEDEMKVAM 229


>gi|310821331|ref|YP_003953689.1| ribosomal protein S1 family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394403|gb|ADO71862.1| Ribosomal protein S1 family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 640

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 113/292 (38%), Gaps = 24/292 (8%)

Query: 425 IVSEITESDGS----SSMATVCGSSLALMDA----GVPISKPVAGIAMGLVKDG-DDFII 475
           I + + ES       S       +S+A++      G+P+   V G+  G V+    D   
Sbjct: 218 IEAHVIESGARGVLLSRALAKGSASMAMLAEARASGMPVEGMVLGVNKGGVEVAIGDVRA 277

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
              IS  +        +  G        ++  +   +S   ++   Q+ +  +       
Sbjct: 278 FCPISQLDVRFVEKPDQFIGEKLTFRVTEVRDRNVVLSRRSLLEEEQRKQAEQTRKTLAE 337

Query: 536 SKVLSESRLQLGEF------------TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
            KV+      + +F             P  E+          V+ +G +V   I+     
Sbjct: 338 GKVIKGKITGVRDFGAFVDVGGVEGMIPVSEMSYQRVGHPSEVVKVGDEVEVEILRMEAG 397

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + N  D    K   +             ++ ++ E +++ +G+VV++  FGAFV      
Sbjct: 398 QPNSPDKAKQKERITLSLRARQEDPFKVALAELKEGDRL-QGKVVRLQQFGAFVELRPGV 456

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           DGLVHIS LS  R+A   DVV+ G+T+WV +   D    +I L  K+ +++ 
Sbjct: 457 DGLVHISALSDRRIAHPRDVVQVGETIWVAIEKIDPNEKRIGL-RKISEEDA 507



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            P+V ++  G+V ++  +G F+ F G + GL+  ++  T+R          G  V V +L
Sbjct: 529 RPKVGQVVTGKVDRIEPYGVFLAFPGGK-GLIPAAETGTDRGTDLRKHFSLGQEVKVAIL 587

Query: 676 DFDDRGKIKLSM 687
           D D  GKI+LS+
Sbjct: 588 DIDASGKIRLSI 599


>gi|218260365|ref|ZP_03475721.1| hypothetical protein PRABACTJOHN_01384 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224556|gb|EEC97206.1| hypothetical protein PRABACTJOHN_01384 [Parabacteroides johnsonii
           DSM 18315]
          Length = 708

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I ++          A    + +      +  +  +I  G V  + +FG FV      +
Sbjct: 602 LDIMEELDKPGRDPRQAIQVFSFDPTVKTIEDLKEGQILPGIVTNITNFGCFVDVGIKEN 661

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           GLVHIS+L+   V+  + VV     V VK++  D  R ++ LSMK +
Sbjct: 662 GLVHISELADRFVSDPTQVVSIHQHVKVKVVSVDLVRKRVGLSMKGI 708


>gi|15644433|ref|NP_229485.1| hypothetical protein TM1685 [Thermotoga maritima MSB8]
 gi|148270115|ref|YP_001244575.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|4982261|gb|AAD36752.1|AE001809_4 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|147735659|gb|ABQ46999.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
          Length = 124

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V ++ KG+V K++ +GAFV   G   G +HIS++S   V +  D + EG  +  K++ 
Sbjct: 1   MKVGELVKGKVSKIVKYGAFVDIEGGERGFIHISKISKNYVKRIEDYLHEGQEISAKVIG 60

Query: 677 FDDRGKIKLSMKVVDQNTGK 696
               G  +LS+K +++ T K
Sbjct: 61  RARNGGWELSLKDLEEETPK 80


>gi|296328741|ref|ZP_06871255.1| S1 RNA binding domain protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154076|gb|EFG94880.1| S1 RNA binding domain protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 722

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDD 589
           IL ++   L +   +L     R++       +       G + ++ + E     + +  D
Sbjct: 573 ILGKIGFDLEKYNNELDVARERLKSF--DYKKFAKENEFGLETVKDVYEALLKDRRDPRD 630

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D    +  S +  I+             EV    +G V  V+ FGAF+      D L+HI
Sbjct: 631 DFEKPLLKSDILNIDN-----------LEVGMELEGTVRNVVKFGAFIDIGLKNDALLHI 679

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S++S + +   S V+  G  + VK+ D D DRG++ L+ K
Sbjct: 680 SEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGRVGLTRK 719


>gi|269122527|ref|YP_003310704.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616405|gb|ACZ10773.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
          Length = 721

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 13/167 (7%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
            +    IL E    L + +  +     ++E + I  ++I      G +  + I       
Sbjct: 567 YKIAEKILGEAGCSLKDLKADIKGTQEKLEKLNI--EKIIKENEFGEETAKDI------- 617

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            N    G           +  +  +  +         I +G V  V  FG FV      D
Sbjct: 618 YNALLKGRRDPREEFEKPLLRSDILNMNDLAD---GMILEGTVRNVAKFGVFVDIGLKND 674

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            L+H+S+LS + ++  + V+  G+ + VK+L  D +RG++ L+ K +
Sbjct: 675 ALIHVSELSNKFISDPTKVLSVGEIIKVKILSIDKNRGRVALTRKGL 721


>gi|225870852|ref|YP_002746799.1| transcription accessory protein [Streptococcus equi subsp. equi
           4047]
 gi|225700256|emb|CAW94488.1| putative transcription accessory protein [Streptococcus equi subsp.
           equi 4047]
          Length = 710

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           R ++ A+  +++   + +G + ++ I+        ++ DD    +               
Sbjct: 577 RAKLQAVNLEEMAEQLTLGQETLKDIIADLLKPGRDLRDDFEAPVLR-----------KD 625

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                   V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V
Sbjct: 626 ILSVKDLAVGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSVGDLV 685

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V +   D DR K+ LS+
Sbjct: 686 TVWVSKVDLDRHKVNLSL 703


>gi|115377075|ref|ZP_01464291.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
 gi|115365914|gb|EAU64933.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 641

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 113/292 (38%), Gaps = 24/292 (8%)

Query: 425 IVSEITESDGS----SSMATVCGSSLALMDA----GVPISKPVAGIAMGLVKDG-DDFII 475
           I + + ES       S       +S+A++      G+P+   V G+  G V+    D   
Sbjct: 219 IEAHVIESGARGVLLSRALAKGSASMAMLAEARASGMPVEGMVLGVNKGGVEVAIGDVRA 278

Query: 476 LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
              IS  +        +  G        ++  +   +S   ++   Q+ +  +       
Sbjct: 279 FCPISQLDVRFVEKPDQFIGEKLTFRVTEVRDRNVVLSRRSLLEEEQRKQAEQTRKTLAE 338

Query: 536 SKVLSESRLQLGEF------------TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
            KV+      + +F             P  E+          V+ +G +V   I+     
Sbjct: 339 GKVIKGKITGVRDFGAFVDVGGVEGMIPVSEMSYQRVGHPSEVVKVGDEVEVEILRMEAG 398

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           + N  D    K   +             ++ ++ E +++ +G+VV++  FGAFV      
Sbjct: 399 QPNSPDKAKQKERITLSLRARQEDPFKVALAELKEGDRL-QGKVVRLQQFGAFVELRPGV 457

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
           DGLVHIS LS  R+A   DVV+ G+T+WV +   D    +I L  K+ +++ 
Sbjct: 458 DGLVHISALSDRRIAHPRDVVQVGETIWVAIEKIDPNEKRIGL-RKISEEDA 508



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            P+V ++  G+V ++  +G F+ F G + GL+  ++  T+R          G  V V +L
Sbjct: 530 RPKVGQVVTGKVDRIEPYGVFLAFPGGK-GLIPAAETGTDRGTDLRKHFSLGQEVKVAIL 588

Query: 676 DFDDRGKIKLSM 687
           D D  GKI+LS+
Sbjct: 589 DIDASGKIRLSI 600


>gi|313884458|ref|ZP_07818219.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620242|gb|EFR31670.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 167

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 33/56 (58%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
           +FGAFV       GLVHISQLS   V   +D +K GD V VK++     GKI LSM
Sbjct: 18  NFGAFVSLSDNESGLVHISQLSNSFVKDINDFIKVGDEVEVKVIKIMPDGKINLSM 73


>gi|258648127|ref|ZP_05735596.1| ribosomal protein S1 [Prevotella tannerae ATCC 51259]
 gi|260852006|gb|EEX71875.1| ribosomal protein S1 [Prevotella tannerae ATCC 51259]
          Length = 590

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GFIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDIFVGKTMEFQVVKINQEYKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  +A++  +    +  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEAQKQEIISKLQKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    +G+
Sbjct: 247 -WGRVNDPHEVVQLDQKLNVVILDFDEEKKRIALGLKQLTPHPWDALAPELKVGDKVQGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
           VV + D+GAFV      +GL+H+S++S  + +    D +K GD V   +L  D + + + 
Sbjct: 306 VVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFLKVGDEVEAVILTLDRQERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + ++  K I
Sbjct: 366 LGIKQLKEDPWKDI 379



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  + I     V   ++G+V    +FG FV      DGLVHIS LS  ++V   S+  + 
Sbjct: 374 DPWKDIEVKYPVGSKHQGKVRNFTNFGVFVELEEGVDGLVHISDLSWTKKVKHPSEFTQL 433

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G  + V +L+ D    ++ L  K +++N  
Sbjct: 434 GAELDVVVLEIDKANRRLSLGHKQLEENPW 463



 Score = 42.2 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +  + I   +    +  + GTV          +               N + +G V+ + 
Sbjct: 2   ENYKNIQPLSEFDWDAFEKGTV----EGGENQQEQEASYNKTLGNVTENDVVEGTVISIN 57

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
                V      DG+V +S+            ++ GD V V + +  D +G++ LS K
Sbjct: 58  KREVVVSIGFKSDGIVPVSEFRY----NPE--LQVGDKVEVYIENQEDKKGQLVLSHK 109



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                  + E   I++G+VV+++D GA +      +G      L  E  ++    V+ G+
Sbjct: 462 PWDKFEGLFEDGSIHEGKVVEILDKGAVIQLEEGVEGFATPKHLVKEDGSR----VQLGE 517

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           T+  K+++F+ D  ++ LS     ++  +
Sbjct: 518 TLPFKVIEFNKDNKRVILSHSRTFEDPQR 546


>gi|332637253|ref|ZP_08416116.1| polyribonucleotide nucleotidyltransferase (putative) [Weissella
           cibaria KACC 11862]
          Length = 133

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  + +G V  +  +GAFV       GL+HIS+  +  +    D +  G  + V +LD D
Sbjct: 5   IGDVVEGTVTGIQPYGAFVQLDEHTQGLIHISECRSAFIRHVGDELHVGQVIKVMVLDID 64

Query: 679 D-RGKIKLSMKVV 690
               KI LS + V
Sbjct: 65  QYNQKISLSRRSV 77


>gi|319954394|ref|YP_004165661.1| ssu ribosomal protein s1p [Cellulophaga algicola DSM 14237]
 gi|319423054|gb|ADV50163.1| SSU ribosomal protein S1P [Cellulophaga algicola DSM 14237]
          Length = 606

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 25/233 (10%)

Query: 467 VKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKR 526
           +K GD   +L DI   ED  G +   V       T M  D       +  +V    + + 
Sbjct: 104 LKVGDKVEVLIDI--REDKSGQL---VLSHRKARTIMAWDRVNAAHDKEEIVNGFVKCRT 158

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
               I++            +  F P  +I   P       +G         +E    K+N
Sbjct: 159 KGGMIVDVFG---------IEAFLPGSQIDVKPIRDYDQYVGKT-------MEFKVVKIN 202

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            +    V    + +       E  + I    E  ++ +G V  +  +G F+   G  DGL
Sbjct: 203 HEFKNVVVSHKALIEADIE--EQKKEIIGQLEKGQVLEGVVKNITSYGVFIDL-GGVDGL 259

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           VHI+ LS  R+   ++VV+    + V +LDFDD   +I+L +K ++++  + +
Sbjct: 260 VHITDLSWSRINHPNEVVELDQKLNVVILDFDDNKSRIQLGLKQLEKHPWEAL 312



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    +++D  ++    KG+VV + D+GAF+      +GL+H+S++S    +    D VK
Sbjct: 306 KHPWEALSDEIKIGDKVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVK 365

Query: 666 EGDTVWVKLL--DFDDRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D DDR K+ L +K +  +    I
Sbjct: 366 VGDEVEAVVLTMDRDDR-KMSLGIKQMTPDPWTDI 399



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGL++IS LS  +++   S+ V  
Sbjct: 394 DPWTDITTKYPVASKHTGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFVTV 453

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD + V++L+ D  G+ + L  K    N  
Sbjct: 454 GDKLEVEVLELDVEGRKLSLGHKQTTDNPW 483


>gi|154493955|ref|ZP_02033275.1| hypothetical protein PARMER_03299 [Parabacteroides merdae ATCC
           43184]
 gi|154086215|gb|EDN85260.1| hypothetical protein PARMER_03299 [Parabacteroides merdae ATCC
           43184]
          Length = 597

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   +     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKI----VKINQEFKNVVVSHKALIEAELEQQK--KDIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   ++V+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSHPEEIVQLDQKINVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWEDIESRFPVGSRHMAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GAEIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDALDPNLKVGDKVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWTQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD +   +L  D D  K+ L +K +  +  + I
Sbjct: 347 GDEIEAVILTLDRDERKMSLGIKQLKADPWEDI 379


>gi|229917801|ref|YP_002886447.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
 gi|229469230|gb|ACQ71002.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
          Length = 709

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 606 AREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            + ++R+     E  ++   ++G V  V+DFGAFV     +DGLVHIS+LS   V    D
Sbjct: 618 QKPLLRTDVMSLEDLQVGMEFQGTVRNVIDFGAFVDIGVKQDGLVHISKLSNRYVKHPLD 677

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
           VV  GD V V +   D +RG+I L+M
Sbjct: 678 VVAVGDIVTVWIEQVDVNRGRISLTM 703


>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
 gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
          Length = 246

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 21/243 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVG---LLQRTHGSSLFIRGDTQAIVVVTLGTREDEQ 361
             + ++  R+DGR     R I   +G   +     G + +  G+T+ +  +        Q
Sbjct: 5   EYINEEGYRLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYI--------Q 56

Query: 362 YVDSLSGTQRN-DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
               L  T             P    +  +               R     ++       
Sbjct: 57  GPTELKKTDEKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKN 116

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I   I E DG    A +    LAL+DAG+ I   ++  ++  +++     I+ D +
Sbjct: 117 SEINIFLYIIERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNK----IIVDGN 172

Query: 481 GDEDHLGHMDFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             E + G  +  +        I  ++ D +   +  +I    +Q      ++I   M   
Sbjct: 173 QLEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNIGRVMQLT 229

Query: 539 LSE 541
           + E
Sbjct: 230 VKE 232



 Score = 38.7 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 76/206 (36%), Gaps = 15/206 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG      G T +L+ +     LK   +   +  +     + V      Y +R+ +  +
Sbjct: 38  ADGFAFYEIGNTKILSYIQGPTELKKTDEKCSIKCDVFLSPFNV------YDKRKKKTKD 91

Query: 87  N-EILISRMIDRSIRP-LFSKCYKN-ETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
           N    IS  I       +    YKN E  + + +++ D        ++     AL+ +G+
Sbjct: 92  NITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKH--AAINTCILALIDAGI 149

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLSEDVV 200
             +  +    V Y+  + +++    E       L + +      ++++E +A ++  D+ 
Sbjct: 150 AIKYFISACSVLYLQNKIIVDGNQLEINSGSPELTMVIELNTHKIILLEFDA-EVPIDIF 208

Query: 201 LDAIIFGHNECKPVIEAISKLAKMCA 226
              +    + C  +   +    K  A
Sbjct: 209 ESMVQTCIDSCVNIGRVMQLTVKENA 234


>gi|19703417|ref|NP_602979.1| transcription accessory protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713489|gb|AAL94278.1| Transcription accessory protein (S1 RNA binding domain)
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 723

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDD 589
           IL ++   L +   +L     R++       +       G + ++ + E     + +  D
Sbjct: 574 ILGKIGFDLEKYNNELDVARERLKSF--DYKKFAKENEFGLETVKDVYEALLKDRRDPRD 631

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D    +  S +  I+             EV    +G V  V+ FGAF+      D L+HI
Sbjct: 632 DFEKPLLKSDILNIDN-----------LEVGMELEGTVRNVVKFGAFIDIGLKNDALLHI 680

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S++S + +   S V+  G  + VK+ D D DRG++ L+ K
Sbjct: 681 SEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGRVGLTRK 720


>gi|299472226|emb|CBN77196.1| 30S ribosomal protein S1 [Ectocarpus siliculosus]
          Length = 749

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A+ + + +   PE  +   G+V  +  FGAFV      DGL+HISQ++ + V+   D 
Sbjct: 499 KKAKSVEQFLNLSPE--EWISGRVASITHFGAFVAVDDDTDGLLHISQIAEDHVSNVEDH 556

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           ++ G  V V++++ D D  ++ LSM+   QN+ +
Sbjct: 557 LQIGQEVQVRVIEVDVDNCRLGLSMREPRQNSPR 590



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V + Y+G +  V+ +GAFV      +GLVHISQL+ E VA   D VKEGD V V++L+ D
Sbjct: 120 VGEEYEGVINNVVTYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLNVD 179

Query: 679 -DRGKIKLSMKV 689
            +  K+ LSM+ 
Sbjct: 180 GEARKLVLSMRQ 191



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+VV ++ +GAFV+  G  DGLVHIS+++  RV    DV + G  V V++ D + D   +
Sbjct: 612 GRVVSIVPYGAFVNIEGNIDGLVHISEMAIGRVDSVEDVCEMGQEVQVRISDINTDNNTV 671

Query: 684 KLSM 687
            LSM
Sbjct: 672 NLSM 675



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDF 677
            +  +G VV +M++GAFV   G  DG+VHISQL    ERV    + V+ G  V V++L+ 
Sbjct: 402 EEWLEGTVVSIMNYGAFVRLDGDVDGMVHISQLDPHGERVDSVYNSVEIGQDVRVRILEA 461

Query: 678 DD-RGKIKLSMKV 689
           D    K++L+M+ 
Sbjct: 462 DPSSRKLRLTMRE 474



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDFD 678
           +    +V  ++ +GAF        G VHISQ+S   E VA  SDV+  G  V V++ + D
Sbjct: 216 QFVSAKVENIVSYGAFFGLEDGCSGFVHISQMSPTGEHVADVSDVLTVGQVVDVRIREVD 275

Query: 679 DR-GKIKLSM 687
           ++ G+I +S+
Sbjct: 276 EKLGRINMSL 285



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 19/140 (13%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD-GTVKIASSSLAEIEAAREMIRSITDVP 617
               + +V+ +G  V   I E       +D+  G + ++     + EA R    + T   
Sbjct: 253 HVADVSDVLTVGQVVDVRIRE-------VDEKLGRINMSLLPYGQGEAPRSAPVAATKDV 305

Query: 618 ------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---AKTSDVVKEGD 668
                 +  +  KG V  V D+G FV+  G  DGL+H+S++ST+R           +EG 
Sbjct: 306 SHLAGSDPTEFRKGTVSAVADYGLFVNIEG-VDGLLHVSKMSTDRSITSENIHSHYEEGQ 364

Query: 669 TVWVKLLDFD-DRGKIKLSM 687
            V +++++ +    K+ LSM
Sbjct: 365 EVEIRIMEVNTANNKMSLSM 384


>gi|213854161|ref|ZP_03382693.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 86

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
            +  VR ++      +   GS L   GDT+ +   ++    +E     L G  +      
Sbjct: 1   SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQGWITAE 56

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           Y  LP +T   +   A   ++ G     +R
Sbjct: 57  YGMLPRSTHTRNAREAAKGKQGGRTMEIQR 86



 Score = 37.6 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV 44
          RP+ L T    + ++G+VL  +G+T VL T 
Sbjct: 6  RPVTL-TRNYTKHAEGSVLVEFGDTKVLCTA 35


>gi|239906693|ref|YP_002953434.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
 gi|239796559|dbj|BAH75548.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
          Length = 713

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  V  FGAFV     RDGLVH+S L+   V   + VV  G  V V +L  D +RG++
Sbjct: 641 GRVTNVTAFGAFVDVGVHRDGLVHVSHLADAYVVDPAKVVAAGQEVMVTVLAIDKERGRL 700

Query: 684 KLSMKVVDQNT 694
            LSMK   Q T
Sbjct: 701 SLSMKSEPQAT 711


>gi|195978466|ref|YP_002123710.1| S1 RNA-binding domain transcription accessory protein
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975171|gb|ACG62697.1| S1 RNA-binding domain transcription accessory protein
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 710

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           R ++ A+  +++   + +G + ++ I+        ++ DD    +               
Sbjct: 577 RAKLQAVNLEEMAEQLTLGQETLKDIIADLLKPGRDLRDDFEAPVLR-----------KD 625

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                   V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V
Sbjct: 626 ILSVKDLAVGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSVGDLV 685

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V +   D DR K+ LS+
Sbjct: 686 TVWVSKVDLDRHKVNLSL 703


>gi|218247838|ref|YP_002373209.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8801]
 gi|257060841|ref|YP_003138729.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8802]
 gi|218168316|gb|ACK67053.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
 gi|256591007|gb|ACV01894.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
          Length = 331

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 185 RALVERKMNGLEVGQVVVGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNV 243

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 244 NDALKVMIIDLDAERGRISLSTKQLEPEPG 273



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 34  DIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDNPEEVLQSNETREFFILTDENE 93

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 94  DGQLTLSIRRIE 105


>gi|314936825|ref|ZP_07844172.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655444|gb|EFS19189.1| general stress protein 13 [Staphylococcus hominis subsp. hominis
           C80]
          Length = 127

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
             T   E   I K +V  +  +GAFV      +GL+HIS++  + V      + EG  V 
Sbjct: 1   MNTHYKEGQHI-KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVK 59

Query: 672 VKLLDFDDRGKIKLSMKVVD 691
            K+L  DD GK+ LS+K  D
Sbjct: 60  AKILSIDDEGKLNLSLKDND 79


>gi|228474295|ref|ZP_04059030.1| general stress protein 13 [Staphylococcus hominis SK119]
 gi|228271654|gb|EEK13001.1| general stress protein 13 [Staphylococcus hominis SK119]
          Length = 127

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
             T   E   I K +V  +  +GAFV      +GL+HIS++  + V      + EG  V 
Sbjct: 1   MNTHYKEGQHI-KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVK 59

Query: 672 VKLLDFDDRGKIKLSMKVVD 691
            K+L  DD GK+ LS+K  D
Sbjct: 60  AKILSIDDEGKLNLSLKDND 79


>gi|218258074|ref|ZP_03474501.1| hypothetical protein PRABACTJOHN_00154 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225793|gb|EEC98443.1| hypothetical protein PRABACTJOHN_00154 [Parabacteroides johnsonii
           DSM 18315]
          Length = 597

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   +     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKI----VKINQEFKNVVVSHKALIEAELEQQK--KDIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   ++V+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSHPEEIVQLDQKINVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWEDIESRFPVGSRHAAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GAEIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDALDPNLKVGDKVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWTQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD +   +L  D D  K+ L +K +  +  + I
Sbjct: 347 GDEIEAVILTLDRDERKMSLGIKQLKADPWEDI 379


>gi|199598131|ref|ZP_03211554.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|258538996|ref|YP_003173495.1| General stress protein 13 [Lactobacillus rhamnosus Lc 705]
 gi|199591057|gb|EDY99140.1| RNA binding protein (S1 domain) [Lactobacillus rhamnosus HN001]
 gi|257150672|emb|CAR89644.1| General stress protein 13 [Lactobacillus rhamnosus Lc 705]
 gi|259649153|dbj|BAI41315.1| RNA binding protein [Lactobacillus rhamnosus GG]
          Length = 119

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G+V  V  +GAFV       GLVHIS+     V  TSD+   G  V V +LD D+   K
Sbjct: 2   TGKVTGVQPYGAFVMLDEHTQGLVHISECQHGYVKDTSDIFNVGQRVEVVILDIDEYTQK 61

Query: 683 IKLSMKVVDQNT 694
           I LS++ +    
Sbjct: 62  ISLSLRALQAPP 73


>gi|307299324|ref|ZP_07579125.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915120|gb|EFN45506.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 571

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I    K +  + ++    +   ++    ++ S    +    +  ++I D  +   I K +
Sbjct: 317 IKKDLKSVVEVGDEVKVTIKEINEEKRTLSLSYREAMG---DPWQNIGDKYKEGDILKAK 373

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
             KV+  G  +       G V +S++S   V +  DVVKEGD + VK+L  D    +++L
Sbjct: 374 TAKVLPTGVILELEEYVSGFVPVSEVSWNFVDRIEDVVKEGDEIEVKILSIDSVNRRMRL 433

Query: 686 SMKVVDQNTGKPI 698
           S+K    +  + +
Sbjct: 434 SIKQAYSDPWEKV 446



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E I++  +  EV +  +G V  + +FGAFV        L+  S++S +   + SD++K G
Sbjct: 182 EAIKAYFETIEVGQELEGTVESIKNFGAFVKLNDNVTALIPASEMSWDPSVRISDLLKPG 241

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            TV  K++  D+   KI LS+K + ++  
Sbjct: 242 QTVRTKVIGVDEAEKKISLSLKQMTEDPW 270



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
              +    P  E+   P  +I +++  G  V          KV   D+   KI+ S    
Sbjct: 214 NDNVTALIPASEMSWDPSVRISDLLKPGQTV--------RTKVIGVDEAEKKISLSLKQM 265

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK-TS 661
            E   +   ++ D  EV+    G V  +  FG FV      +GLVHIS++    + K   
Sbjct: 266 TE---DPWSTLKDRYEVDSTVVGTVKNITPFGFFVSLEPGVEGLVHISEVFWGNIKKDLK 322

Query: 662 DVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            VV+ GD V V + + ++  + + LS +    +  + I
Sbjct: 323 SVVEVGDEVKVTIKEINEEKRTLSLSYREAMGDPWQNI 360



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  E+     D+I +V+  G        ++   K+   D    ++  S       
Sbjct: 390 VSGFVPVSEVSWNFVDRIEDVVKEG--------DEIEVKILSIDSVNRRMRLSIKQAYS- 440

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVV 664
             +    ++    V     G V ++   GA V       +  + +SQ+S ER     D V
Sbjct: 441 --DPWEKVSAELSVGDHVTGTVTRLTKSGAIVLIDSYGVEAFLPVSQVSLERTENIEDSV 498

Query: 665 KEGDTVWVKLL 675
           + G     K++
Sbjct: 499 QVGRHDQFKII 509


>gi|299822367|ref|ZP_07054253.1| YhgF like protein [Listeria grayi DSM 20601]
 gi|299815896|gb|EFI83134.1| YhgF like protein [Listeria grayi DSM 20601]
          Length = 726

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            ++G    +  + AI    + + + +G + I+ I+    A          +     LA  
Sbjct: 584 EEIGTEKAKTALQAIDAAAVTDKLQVGKETIQDIIASLIAP--------GRDLREELAMP 635

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +++++     P +    +G V  V+DFGAFV     +DGLVHIS+LS + +    DV
Sbjct: 636 LLKKDIVKMEDLKPGME--LQGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFIKNPMDV 693

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSM 687
           V  GD V V + + D ++ +I L+ 
Sbjct: 694 VSVGDIVTVWVEEVDLNKNRIALTR 718


>gi|55820741|ref|YP_139183.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55736726|gb|AAV60368.1| transcriptional regulator, putative [Streptococcus thermophilus LMG
           18311]
          Length = 710

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ DD    +    + E++              V +  +G
Sbjct: 592 LGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLELK-----------DLSVGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D +  K+ 
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKIDLEHEKLN 700

Query: 685 LSM 687
           LS+
Sbjct: 701 LSL 703


>gi|254302494|ref|ZP_04969852.1| transcriptional accessory protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322686|gb|EDK87936.1| transcriptional accessory protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 722

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDD 589
           IL ++   L +   +L     R++       +       G + ++ + E     + +  D
Sbjct: 573 ILEKIGFDLEKYNNELDVARERLKSF--DYKKFAKENEFGLETVKDVYEALLKDRRDPRD 630

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D    +  S +  I+             EV    +G V  V+ FGAF+      D L+HI
Sbjct: 631 DFEKPLLKSDILNIDN-----------LEVGMELEGTVRNVVKFGAFIDIGLKNDALLHI 679

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S++S + +   S V+  G  + VK+ D D DRG++ L+ K
Sbjct: 680 SEISDKYIDDPSKVLSVGQIIKVKIKDVDKDRGRVGLTRK 719


>gi|312278071|gb|ADQ62728.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative
           [Streptococcus thermophilus ND03]
          Length = 710

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ DD    +    + E++              V +  +G
Sbjct: 592 LGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLELK-----------DLSVGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D +  K+ 
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKIDLEHEKLN 700

Query: 685 LSM 687
           LS+
Sbjct: 701 LSL 703


>gi|212550836|ref|YP_002309153.1| 30S ribosomal protein S1 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549074|dbj|BAG83742.1| 30S ribosomal protein S1 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 612

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V      +      ++  + I   
Sbjct: 175 QIDVKPIRDY----DVFVNKTMEFKIVKINQESKNIVVSHKVLIEAEIEQQK--KDIISK 228

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  +I +G V  + ++G F+   G  DGL+HI+ LS  RV+   ++V+  +   V +LD
Sbjct: 229 LEKGQILEGTVKNITNYGVFIDL-GGVDGLIHITDLSWGRVSHPEEIVQLDEKKNVVILD 287

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD ++ +I L +K +  +    I
Sbjct: 288 FDNEKKRIALGLKQLTPHPWNNI 310



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +   +I D   V   +  +V     FG FV      +GL+HIS LS  R +   ++V   
Sbjct: 392 DPWENINDKYAVGSRHTAKVRNFTSFGVFVEIEKGIEGLIHISDLSWTRKIKHPNEVTSI 451

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D D  ++ L  K +++N  
Sbjct: 452 GSDIDVQVLEIDKDNRRLSLGHKQIEENPW 481



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 632 DFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           D+GAFV      +GLVH+S+++  + +    + VK GD +   +L  + +  K+ L +K 
Sbjct: 329 DYGAFVEIAPGIEGLVHVSEMTWTQHLKSAQEFVKVGDEIEAVVLSLEREERKMSLGIKQ 388

Query: 690 VDQNTGKPI 698
           +  +  + I
Sbjct: 389 LKNDPWENI 397



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             + N++  G+V  +     F+      DG+V  S+            +K GD V V + 
Sbjct: 60  KVKNNEVVVGKVTAITKKEVFIDIGYKSDGVVSASEFRYCPD------LKVGDEVEVYIE 113

Query: 676 DF-DDRGKIKLSMK 688
           +  D  G++ +S K
Sbjct: 114 NQEDKNGQLLISHK 127


>gi|322390994|ref|ZP_08064499.1| RNA binding protein [Streptococcus parasanguinis ATCC 903]
 gi|321142298|gb|EFX37771.1| RNA binding protein [Streptococcus parasanguinis ATCC 903]
          Length = 136

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV       GL+HIS++ +  V+   D++  G+ V+V+++D
Sbjct: 1   MKIGDKLEGTITGIQPYGAFVELESGVTGLIHISEIRSGYVSNIHDILSIGEKVFVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
            D+   K  LS++ +++   + I
Sbjct: 61  VDEYSKKASLSLRTLEETPQRSI 83


>gi|116789895|gb|ABK25430.1| unknown [Picea sitchensis]
          Length = 381

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           + I E     +       V   S     +  + +             +++G+V  V  FG
Sbjct: 140 KTISESAKDLIGSTLSLKVIEVSEEENMLIFSEKQAMWEKFSINEGDVFEGRVSSVTKFG 199

Query: 635 AFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           AFV+          DGLVHIS++S + V    D++K+GD V VK++  + ++ ++  S+K
Sbjct: 200 AFVNLRFPDGGYYVDGLVHISEVSWDLVRDVRDILKKGDDVRVKVIQINVEKSRLAFSIK 259

Query: 689 VVDQNT 694
            +  + 
Sbjct: 260 QLQADP 265


>gi|116627549|ref|YP_820168.1| transcriptional regulator [Streptococcus thermophilus LMD-9]
 gi|116100826|gb|ABJ65972.1| Transcriptional accessory protein [Streptococcus thermophilus
           LMD-9]
          Length = 710

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 13/129 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           +     +G+G + ++ I+        ++ DD    +    + E++              V
Sbjct: 586 NDTAEELGLGQETLKDIIADLLKPGRDLRDDFEAPVLRKDVLELK-----------DLSV 634

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D 
Sbjct: 635 GQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKIDL 694

Query: 679 DRGKIKLSM 687
           +  K+ LS+
Sbjct: 695 EHEKLNLSL 703


>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
           mellifera]
          Length = 270

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 103/266 (38%), Gaps = 23/266 (8%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            ++ ++  K    +  D  +R D R +  +R I  + G++ +  GS+    G+T+ +  V
Sbjct: 18  YIYSNLNKK-SDKIKHDFNIRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSV 76

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
               RE            + +    + F P +  +  ++      E  +  + +RA+ P 
Sbjct: 77  -FDPRELSNRN---GYCSQGEIYCEFKFAPFSCQKR-KIHQQDAEEKQYSLILQRALEPA 131

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
                   + + + + + ++ GSS  A +  +S AL +AGVP+   V    +G+  +   
Sbjct: 132 ---HEFPNFQVDVYAMVLDNAGSSLAAAIMAASTALANAGVPMFGLVTASTIGIYDN--- 185

Query: 473 FIILSDISGDEDHLG--HMDFKVAGTDSGITA--------MQMDMKIGGISENIMVMALQ 522
              L D +  E+ +     D +       IT         +     IG I  N ++ A +
Sbjct: 186 -HYLMDPTDTEEVICNTQPDNQDDFNHGIITLASLAQHNQVSEVFLIGSIDTNSIIQATE 244

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGE 548
                   I   + + L ++ ++L  
Sbjct: 245 ILTTVNKDICPVLQQCLVKTIMKLHN 270



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 9/158 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + L+TG ++ Q+ G+     G T V+ +V   R L +   +      Y E  +A    
Sbjct: 47  RKIFLKTGIVS-QAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEIYCEFKFA---- 101

Query: 74  PGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
           P    +R+    +  E   S ++ R++ P   +    +  V   V+  D   S    +++
Sbjct: 102 PFSCQKRKIHQQDAEEKQYSLILQRALEPA-HEFPNFQVDVYAMVL--DNAGSSLAAAIM 158

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDED 170
           AAS AL  +G+P  G V  + +   +  Y+++P   E+
Sbjct: 159 AASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDTEE 196


>gi|322375346|ref|ZP_08049859.1| S1 RNA binding domain protein [Streptococcus sp. C300]
 gi|321279609|gb|EFX56649.1| S1 RNA binding domain protein [Streptococcus sp. C300]
          Length = 709

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   
Sbjct: 632 KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKI 691

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R K+ LS+   D+ 
Sbjct: 692 DTEREKVNLSLLAPDET 708


>gi|320527747|ref|ZP_08028917.1| S1 RNA binding domain protein [Solobacterium moorei F0204]
 gi|320131912|gb|EFW24472.1| S1 RNA binding domain protein [Solobacterium moorei F0204]
          Length = 758

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           ++     K     +++   K +I++     +         A  +          V     
Sbjct: 583 DISFPKEKTAELGIDEYTLK-DIEEAIRQPLRDYRDQFDGALLKSDVLNISDLHVGDQLS 641

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV      DGLVH+S +S +R++  S+ V   D V V +   D+ R ++
Sbjct: 642 GTVRNVVDFGAFVDIGLHEDGLVHLSHMSMKRISHPSECVAVNDIVKVWVYQIDEARNRV 701

Query: 684 KLSMKVVDQ 692
           +LS+  +DQ
Sbjct: 702 QLSLLPLDQ 710


>gi|315613267|ref|ZP_07888176.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
 gi|315314502|gb|EFU62545.1| YhgF like protein [Streptococcus sanguinis ATCC 49296]
          Length = 727

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   
Sbjct: 650 KIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKI 709

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R K+ LS+   D+ 
Sbjct: 710 DTEREKVNLSLLAPDET 726


>gi|153824200|ref|ZP_01976867.1| 30S ribosomal protein S1 [Vibrio cholerae B33]
 gi|126518276|gb|EAZ75501.1| 30S ribosomal protein S1 [Vibrio cholerae B33]
          Length = 309

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 28  PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 86

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 87  DIDEERRRISLGLKQCKANPWQ 108



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 192 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 251

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 252 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 284



 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 69  IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 114

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 115 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 173

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 174 AVDAERERISLGIKQMENDP 193


>gi|313890022|ref|ZP_07823658.1| S1 RNA binding domain protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121613|gb|EFR44716.1| S1 RNA binding domain protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 117

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++   + G +  +  +GAFV       GL+HIS++ T  +    D++  GD V V+++D
Sbjct: 1   MKIGDKFHGTITGIKPYGAFVALDNGTTGLIHISEIKTGYIDNIHDILAVGDRVDVQVVD 60

Query: 677 FDDRG-KIKLSMKVVDQN 693
           +D+   K+ LS++ +++ 
Sbjct: 61  YDEFNQKVSLSIRTLEEE 78


>gi|290559254|gb|EFD92594.1| Exoribonuclease, phosphorolytic domain 2 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 145

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
             +  + ++ G   RR+I   ++   A++  +         + +   IT++D  +  A++
Sbjct: 1   TFSVPDRAKPGM-DRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGTRCASL 59

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL------GHMDFKVAG 495
              ++A  DAG+P+   VA +A G + D     +  D+S +E+          +      
Sbjct: 60  TAGAMACADAGLPMRDLVAAVAAGKIGD----HVCLDLSKEEEDFHEGEGATDVPIAFLP 115

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQA 524
           + + I  +Q+D ++       +  ++++A
Sbjct: 116 SKNEILLLQLDGRVSRDELKKVSRSVKKA 144


>gi|220932348|ref|YP_002509256.1| CRISPR-associated RAMP protein, Cmr6 family [Halothermothrix orenii
           H 168]
 gi|219993658|gb|ACL70261.1| CRISPR-associated RAMP protein, Cmr6 family [Halothermothrix orenii
           H 168]
          Length = 376

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR--DGLVHISQLSTERVAKTS 661
              R   +      +   I +G+V ++  +GAFV     +  DGL++IS ++ + V   +
Sbjct: 1   MKERGRRKISRHNFKEGDIVEGRVTRIKPYGAFVRLDEKKKIDGLIYISNIADKYVKDIT 60

Query: 662 DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           + + EGD + VK+++ +  GKI LS K
Sbjct: 61  NYINEGDQIRVKIINIEKDGKIALSFK 87


>gi|293365555|ref|ZP_06612264.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307703510|ref|ZP_07640452.1| protein tex [Streptococcus oralis ATCC 35037]
 gi|291315923|gb|EFE56367.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307622917|gb|EFO01912.1| protein tex [Streptococcus oralis ATCC 35037]
          Length = 709

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   
Sbjct: 632 KVGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKI 691

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R K+ LS+   D+ 
Sbjct: 692 DTEREKVNLSLLAPDET 708


>gi|120436200|ref|YP_861886.1| 30S ribosomal protein S1 [Gramella forsetii KT0803]
 gi|117578350|emb|CAL66819.1| 30S ribosomal protein S1 [Gramella forsetii KT0803]
          Length = 620

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 192 QIDVKPIRDYDAYVGKNMEFKV----VKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 245

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   +++V+    + V +LD
Sbjct: 246 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEIVELDQKLNVVILD 304

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FD+ + +I+L +K + Q+  
Sbjct: 305 FDESKSRIQLGLKQLSQHPW 324



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ +  +V    KG+VV + D+GAF+      +GL+H+S++S    +    D V 
Sbjct: 321 QHPWDALNEQLKVGDNVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVN 380

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V  ++L  D +  K+ L +K + Q+    I
Sbjct: 381 VGDEVEAQILTLDREDRKMSLGIKQLSQDPWTDI 414



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   ++G V    +FG FV      DGL++IS LS  +++   S+   
Sbjct: 408 QDPWTDITSKYPVGSKHEGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFTN 467

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GD + V +L+ D  G+ + L  K ++ N  
Sbjct: 468 VGDKLEVVVLELDVEGRKLSLGHKQIEDNPW 498


>gi|34540994|ref|NP_905473.1| 30S ribosomal protein S1 [Porphyromonas gingivalis W83]
 gi|188994952|ref|YP_001929204.1| 30S ribosomal protein S1 [Porphyromonas gingivalis ATCC 33277]
 gi|4929270|gb|AAD33925.1|AF143945_1 heme uptake protein A and B [Porphyromonas gingivalis]
 gi|34397309|gb|AAQ66372.1| ribosomal protein S1 [Porphyromonas gingivalis W83]
 gi|188594632|dbj|BAG33607.1| 30S ribosomal protein S1 [Porphyromonas gingivalis ATCC 33277]
          Length = 599

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V      +      ++  + I   
Sbjct: 157 QIDVRPIRDY----DAFVEKTMEFKIVKINQEYKNVVVSHKVLIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RVA   ++V+    + V +LD
Sbjct: 211 LEKGQVLEGIVKNITSYGVFIDL-GGVDGLIHITDLSWGRVAHPEEIVQLDQKINVVILD 269

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD DR +I L +K +  +  
Sbjct: 270 FDEDRKRIALGLKQLMPHPW 289



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 26/257 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIG 510
           I  G VK      ++ D+ G E  L      V              +  I  +  + K  
Sbjct: 129 IVKGYVKCRTKGGMIVDVFGIEAFLPGSQIDVRPIRDYDAFVEKTMEFKIVKINQEYKNV 188

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
            +S  +++ A  + ++  +    E  +VL      +  +      + I    +  +I + 
Sbjct: 189 VVSHKVLIEAELEQQKKEIIGKLEKGQVLEGIVKNITSY-----GVFIDLGGVDGLIHIT 243

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIY 623
                G V      V +D    V I          A            ++    +V    
Sbjct: 244 DLS-WGRVAHPEEIVQLDQKINVVILDFDEDRKRIALGLKQLMPHPWDALDSELKVGDKV 302

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S  + +    D +  GD V   +L  D +  
Sbjct: 303 KGKVVVMADYGAFVEIAQGVEGLIHVSEMSWTQHLRSAQDFLHVGDEVEAVILTLDREER 362

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K +  +    I
Sbjct: 363 KMSLGLKQLKPDPWADI 379



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I     V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWADIETRFPVGSRHHARVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTEV 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++++ D +  ++ L  K +++N  
Sbjct: 434 GADIEVQVIEIDKENRRLSLGHKQLEENPW 463


>gi|116328723|ref|YP_798443.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330620|ref|YP_800338.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121467|gb|ABJ79510.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124309|gb|ABJ75580.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 560

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +         E   + +G V  +  FGAFV      +GL+H S+L+  ++  +  D++K+
Sbjct: 270 DPWVWAERSLEKEMVIRGTVTSLTKFGAFVELKEGLEGLIHTSELAWSKKPPQPKDILKK 329

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V   +LD D    ++ L +K +  N  
Sbjct: 330 GQEVEALVLDIDFKNKRLSLGLKQLQPNPW 359



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVK 629
            +++   E     ++ID        +  L+      +        PEV +  + +G +  
Sbjct: 325 DILKKGQEVEALVLDID------FKNKRLSLGLKQLQPNPWDQLSPEVRRGNVLEGVITG 378

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +  +GAFV      +GL+HIS ++  E+V+  +  +K+GDTV   +LD + D  +I   +
Sbjct: 379 ITKYGAFVEVENGIEGLIHISDITWDEKVSNPTSQLKKGDTVKYMILDVNLDAQRISCGL 438

Query: 688 KVVDQNT 694
           K + +N 
Sbjct: 439 KQLMENP 445



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +   +  I +G+V  + +FG FV      +GLVHIS++   R    +++ K  +
Sbjct: 445 PYEIFRNEHPIGTIVEGKVKSIKEFGIFVEVAPGIEGLVHISEVPNGREVNLTELYKPEE 504

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            +   ++  D    KI LS+K  D+   + 
Sbjct: 505 AIKTAVIKVDVKNKKISLSIKDFDKALERE 534



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++D     + S      E   E   ++    +V    K  V K+  FG F        
Sbjct: 162 IELNDRTRSGVVSRKKLLDEVNEEKWDALLLKFKVGDKVKSVVSKIASFGVFCEV-DGVT 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+    +S ++ A      + G  V + +L+ D +  K+ L +K + ++  
Sbjct: 221 GLLRQRDISYKKYAPFKQYFQIGQEVELVVLELDKENNKLALGLKQLYEDPW 272


>gi|330996791|ref|ZP_08320663.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841]
 gi|329572513|gb|EGG54164.1| 30S ribosomal protein S1 [Paraprevotella xylaniphila YIT 11841]
          Length = 597

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVQLDQKINVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWENIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GAEIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDALDPNLKVGDKVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  K+ L +K +  +  + I
Sbjct: 347 GDEVEAVILTLDREERKMSLGIKQLKADPWENI 379



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              EA  +      +    +++  G V+ +      V+     DG++ +S+         
Sbjct: 27  ESREAQEKAYEGSLNKVNDHEVVDGTVIAMNKREVVVNIGFKSDGIIPMSEFRY----NP 82

Query: 661 SDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
              +K GD V V + +  D +G++ LS K
Sbjct: 83  D--LKVGDKVEVYIENQEDKKGQLILSHK 109


>gi|229511773|ref|ZP_04401252.1| SSU ribosomal protein S1p [Vibrio cholerae B33]
 gi|229351738|gb|EEO16679.1| SSU ribosomal protein S1p [Vibrio cholerae B33]
          Length = 334

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE +K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 53  PEGHKL-SGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVL 111

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 112 DIDEERRRISLGLKQCKANPWQ 133



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 217 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 276

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 277 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 309



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I P ++ NV    G  +  +V      ++ID++           +        +S  +  
Sbjct: 94  IHPSKVVNV----GDEVEVMV------LDIDEERRRISLGLKQCKAN----PWQSFAEAQ 139

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLL 675
                  G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L
Sbjct: 140 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVL 198

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
             D +R +I L +K ++ + 
Sbjct: 199 AVDAERERISLGIKQMENDP 218



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           ++ +RV   S++V  GD + VK+L FD DR ++ L +K + ++    I 
Sbjct: 1   MAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIA 49


>gi|329964008|ref|ZP_08301262.1| Tex-like protein [Bacteroides fluxus YIT 12057]
 gi|328526431|gb|EGF53445.1| Tex-like protein [Bacteroides fluxus YIT 12057]
          Length = 711

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M++ L  S  +L     +   + I P++  +   +G   ++ I+++   K   D  
Sbjct: 561 IVEQMAQDLGCSVTELTSN--KELRLKINPERYLSPT-VGMPTLKDILQELD-KPGRDPR 616

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +K+              +R+I D+ E  ++  G V  + +FGAFV      +GL+H+S
Sbjct: 617 GPIKLFEFDQ--------NVRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLIHLS 667

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           QL+   ++  ++VV     + VK+L  D +R +I+L++K V Q+
Sbjct: 668 QLADRFISDPNEVVSIHQQLRVKVLSIDIERKRIQLTLKGVAQD 711


>gi|312880474|ref|ZP_07740274.1| Tex-like protein [Aminomonas paucivorans DSM 12260]
 gi|310783765|gb|EFQ24163.1| Tex-like protein [Aminomonas paucivorans DSM 12260]
          Length = 715

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
               G V  V  FGAFV     +DGLVH+S LS + V   S+ V+ G  V V +L  D  
Sbjct: 642 MTLPGVVTNVTAFGAFVDVGVHQDGLVHLSHLSDKYVKDPSEAVRPGQRVSVTVLGVDLP 701

Query: 680 RGKIKLSMK 688
           R ++ LSMK
Sbjct: 702 RRRLSLSMK 710


>gi|302783342|ref|XP_002973444.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
 gi|300159197|gb|EFJ25818.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
          Length = 434

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+ +        +  +  G V  +  +GAF+   G   GL+H+SQ+S +R+    +V+ 
Sbjct: 267 HRKALAENQATLGIGSVVVGTVQTIKPYGAFIDL-GGLTGLLHVSQISHDRITTVENVLS 325

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD + V +L  D DRG+I LS K ++   G
Sbjct: 326 PGDKLKVMVLSHDKDRGRISLSTKKLEPTPG 356


>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
 gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
          Length = 259

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 14/211 (6%)

Query: 305 TVMLDKKVRMDGRDSETVRDIS------AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +  + +R+DGR    VR I         V ++    G +   +G T+      +    
Sbjct: 5   EYISLEGLRIDGRRPSEVRHIDILCGPECGVDIINY-DGVAQVTQGLTKVQAF--INGPT 61

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMG-APSRREIGHGRLARRAIHPVLPQTA 417
           D     +  G +  D  +      C   E   MG   +   +   R       PV+    
Sbjct: 62  DIGRSKTKEGFETADSPVEIRCEVCIPSERKSMGHRNNDATVEISRAVVGTFEPVIISHL 121

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
               T+ I   + E+DG      +    +AL+DAG+ +   +      ++ +     +L 
Sbjct: 122 YKNSTIHIFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIVACTAVMLNET----LLI 177

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
           D +  E +   M+  +A + S    + +D++
Sbjct: 178 DPNQLEINASIMELTLALSVSNEELIHIDLR 208



 Score = 37.6 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 83  RPTENEILISRMIDRSIRPLFSKCYK--NETQVIINVMQHDLESSPHVVSMVAASAALML 140
           R  +  + ISR +  +  P+        +   + +NV++ D      V  + A   AL+ 
Sbjct: 97  RNNDATVEISRAVVGTFEPVIISHLYKNSTIHIFVNVLEADGGVKATV--INAVLIALID 154

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-LDLFVSGTQDAVLMVELEANQLSEDV 199
           +G+  +  +V      +N   +++P   E   S ++L ++ +             +S + 
Sbjct: 155 AGIAMKDIIVACTAVMLNETLLIDPNQLEINASIMELTLALS-------------VSNEE 201

Query: 200 VLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKL-EEEMSQMIKEDLRVSCFI 258
           ++   +      K   E I K  K          S+ F+ L + ++    +E L ++  +
Sbjct: 202 LIHIDLRSKYPIKSYAEIIEKAIKG---------SERFAALAKAKLKGYAREHLEINNAV 252

Query: 259 PE-KYVR 264
              K  R
Sbjct: 253 HGSKLAR 259


>gi|322376679|ref|ZP_08051172.1| S1 RNA binding domain protein [Streptococcus sp. M334]
 gi|321282486|gb|EFX59493.1| S1 RNA binding domain protein [Streptococcus sp. M334]
          Length = 718

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 96/239 (40%), Gaps = 16/239 (6%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           +G+  +     +LS ++G    +     K    +  IT+     K+  +       A   
Sbjct: 486 VGVNINTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGF 545

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
            +      + + + V  E+   + E   R++I  +  +         GK+    +++   
Sbjct: 546 LRIPESSNILDNTGVHPENYAAVKELFKRLDIKNLNEE-------AQGKLKSLSIKEMAQ 598

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFGA 635
           ++++  +    I +  L      R+   +     +V  I         +G V  V+DFGA
Sbjct: 599 ELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGVVRNVVDFGA 658

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV      DGL+HIS +S + +   S VV  GD V V +   D +R K+ LS+   D++
Sbjct: 659 FVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPDES 717


>gi|332880545|ref|ZP_08448219.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681533|gb|EGJ54456.1| 30S ribosomal protein S1 [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 597

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVQLDQKINVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWENIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GAEIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDALDPNLKVGDKVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  K+ L +K +  +  + I
Sbjct: 347 GDEVEAVILTLDREERKMSLGIKQLKADPWENI 379



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
              EA  +      +    +++  G V+ +      V+     DG++ +S+         
Sbjct: 27  ESREAQEKAYEGSLNKVNDHEVVDGTVIAMNKREVVVNIGFKSDGIIPMSEFRY----NP 82

Query: 661 SDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
              +K GD V V + +  D +G++ LS K
Sbjct: 83  D--LKVGDKVEVYIENQEDKKGQLILSHK 109


>gi|306829841|ref|ZP_07463028.1| S1 RNA binding domain protein [Streptococcus mitis ATCC 6249]
 gi|331266024|ref|YP_004325654.1| RNA binding protein, putative [Streptococcus oralis Uo5]
 gi|304427852|gb|EFM30945.1| S1 RNA binding domain protein [Streptococcus mitis ATCC 6249]
 gi|326682696|emb|CBZ00313.1| RNA binding protein, putative [Streptococcus oralis Uo5]
          Length = 119

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++D
Sbjct: 1   MKIGDKLTGRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+  GK  LS++ +++ 
Sbjct: 61  FDEYTGKASLSIRTLEEE 78


>gi|302823925|ref|XP_002993610.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
 gi|300138538|gb|EFJ05302.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
          Length = 438

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+ +        +  +  G V  +  +GAF+   G   GL+H+SQ+S +R+    +V+ 
Sbjct: 271 HRKALAENQATLGIGSVVVGTVQTIKPYGAFIDL-GGLTGLLHVSQISHDRITTVENVLS 329

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GD + V +L  D DRG+I LS K ++   G
Sbjct: 330 PGDKLKVMVLSHDKDRGRISLSTKKLEPTPG 360


>gi|269124830|ref|YP_003298200.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
           DSM 43183]
 gi|268309788|gb|ACY96162.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 162

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G+V  +  FGAFV   G  +GL+    +S   +   SDV+  G  V VK+LD D  
Sbjct: 14  MIVTGRVRSLERFGAFVDL-GGVEGLLKTHNISWRPIEYPSDVLSVGKEVTVKILDVDLQ 72

Query: 680 RGKIKLSMKVVDQNTGKPI 698
           RG+I LS+K +  +   P+
Sbjct: 73  RGQISLSLKDLQPDPMIPL 91



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDV 663
              +    I    +V  +  G+VVK++ FG FV     + GL+  S+ +      +    
Sbjct: 81  KDLQPDPMIPLKEKVGSVVTGKVVKIVPFGIFVQIEEGQLGLLMNSEFTGPGAPPRPE-- 138

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSM 687
              G+ + V++ D D D  +I+LS+
Sbjct: 139 --IGEEIQVRIADVDLDSRRIRLSL 161


>gi|322375583|ref|ZP_08050095.1| S1 RNA binding domain protein [Streptococcus sp. C300]
 gi|321279291|gb|EFX56332.1| S1 RNA binding domain protein [Streptococcus sp. C300]
          Length = 128

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             ++     G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++
Sbjct: 9   RMKIGDKLNGRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVV 68

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           DFD+  GK  LS++ +++ 
Sbjct: 69  DFDEYTGKASLSIRTLEEE 87


>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
 gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
          Length = 1444

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 85/256 (33%), Gaps = 11/256 (4%)

Query: 304  RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
            RT          GR +   R      G++ +  GS+    G T+ I  V  G RE  +  
Sbjct: 1186 RTRCRQTPDGSPGRRTAGPR-TDLHAGVVSQATGSAYIEMGQTKVIAAV-YGPREIARRE 1243

Query: 364  DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL 423
            +    T +        F   A     R      +E     +  +A+ P +         +
Sbjct: 1244 EF---TMKGRLCCELKFATFAC-RRRRQHIQDNQEKDGALIVLQALEPAVCLDRFPKSQV 1299

Query: 424  RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA---MGLVKDGDDFIILSDIS 480
             +   + + DGS+  A +  ++  L DAGV +   VAG +    G  +  D  +      
Sbjct: 1300 DVYITVLQDDGSALAAAITCAAAGLADAGVMMYDIVAGCSVRQCGERQLLDPSVGEELSQ 1359

Query: 481  GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
              E    H    V    S +  +      G + +   V A++    G   I   +   L 
Sbjct: 1360 EGESAEDHGMVTVGLLPS-LNQVSALTLDGHLQQQTAVQAVKTCIGGCQGIYPILKDCLV 1418

Query: 541  ES-RLQLGEFTPRVEI 555
             S R ++    P+   
Sbjct: 1419 TSTRKKIPALDPKSSH 1434



 Score = 51.8 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 11/151 (7%)

Query: 26   QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR-- 83
            Q+ G+     G+T V+A V   R +   ++F       + R     K      RR  +  
Sbjct: 1215 QATGSAYIEMGQTKVIAAVYGPREIARREEF-----TMKGRLCCELKFATFACRRRRQHI 1269

Query: 84   PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                E   + ++ +++ P     +  K++  V I V+Q D   S    ++  A+A L  +
Sbjct: 1270 QDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDG--SALAAAITCAAAGLADA 1327

Query: 142  GLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
            G+     V G  V     + +L+P + E+  
Sbjct: 1328 GVMMYDIVAGCSVRQCGERQLLDPSVGEELS 1358


>gi|322387425|ref|ZP_08061035.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
 gi|321141954|gb|EFX37449.1| S1 RNA binding domain protein [Streptococcus infantis ATCC 700779]
          Length = 120

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GL+HIS++ T  +    +V+K GD V V+++D
Sbjct: 1   MKIGDKLNGRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYEVLKIGDEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+  GK  LS++ +++ 
Sbjct: 61  FDEYTGKASLSIRTLEEE 78


>gi|294794649|ref|ZP_06759785.1| S1 RNA binding domain protein [Veillonella sp. 3_1_44]
 gi|294454979|gb|EFG23352.1| S1 RNA binding domain protein [Veillonella sp. 3_1_44]
          Length = 767

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  I KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  GD +  +++  
Sbjct: 642 KVGTIVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAVGDIIEAQIISV 700

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I LS+K +     K
Sbjct: 701 DVKRNRIGLSVKALQPEKPK 720


>gi|169829725|ref|YP_001699883.1| hypothetical protein Bsph_4294 [Lysinibacillus sphaericus C3-41]
 gi|168994213|gb|ACA41753.1| hypothetical transcription accessory protein (S1 RNA binding
           domain) [Lysinibacillus sphaericus C3-41]
          Length = 723

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 29/192 (15%)

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           I+  +      GI      +A          IL+E        + +LG       I A+ 
Sbjct: 548 ISEAKNPFDATGIHPESYHLAE--------QILSEAKID----KKELGTKKAEEAIAALD 595

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             Q+  V+ +G   I+ IV           D  +K +            ++++     E 
Sbjct: 596 IHQLSEVLEIGVVTIQDIV-----------DTLMKPSRDPRDAFPQ--PLLKTDVLKMED 642

Query: 620 NKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            K+    +G V  V+DFGAFV     +DGLVHIS+L  +R+    +VV  GD V V +  
Sbjct: 643 LKVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQ 702

Query: 677 FD-DRGKIKLSM 687
            D  +G+I L+M
Sbjct: 703 IDVSKGRISLTM 714


>gi|329121291|ref|ZP_08249918.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           micraerophilus DSM 19965]
 gi|327470225|gb|EGF15688.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           micraerophilus DSM 19965]
          Length = 629

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             K+   D    +I+ +    +        +     +V+ + + +VVK++DFG  V    
Sbjct: 516 DVKIKSFDKEKQRISFTHKECLP---NPWETAIHDHDVDDVVEAKVVKILDFGVIVEMND 572

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
              GL+HI++++ +   K +DV K GD + V+++  D +R +I  S+
Sbjct: 573 GLTGLLHINEMTEDHNKKPADVCKIGDVLTVRIISIDEERKRISFSL 619



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 13/186 (6%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +++  A  + +      +  +   L      L  F P  +        +++++G    
Sbjct: 368 DWDVIEDAYNKGEPVECEGIEAIKVGLLVQLKSLRGFIPLSQGDLRFVHSLQSLVGK--- 424

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVM 631
                  +  AK+   D    ++  S  A +E  R   +  +        + KG V K+M
Sbjct: 425 -------KFEAKILEVDRVKNRLVLSRKAVLEGQRNSEMDELEVAFNNGDVLKGTVKKIM 477

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            +GAFV      +GL+HIS +S +++AK  DV+     + VK+  FD ++ +I  + K  
Sbjct: 478 PYGAFVGI-NGVEGLLHISDISWKKIAKVEDVLSPEQVIDVKIKSFDKEKQRISFTHKEC 536

Query: 691 DQNTGK 696
             N  +
Sbjct: 537 LPNPWE 542



 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I        + +G VV + D  A++ F    + ++   + S    A   DV+K GDT
Sbjct: 282 MEDINLDVHKGSVVEGTVVDLSDDKAYISFGYKTEAVLPAHEYSYPAPASLKDVLKVGDT 341

Query: 670 VWVKLLD 676
           + V+++ 
Sbjct: 342 IRVQVVS 348


>gi|322372624|ref|ZP_08047160.1| S1 RNA binding domain protein [Streptococcus sp. C150]
 gi|321277666|gb|EFX54735.1| S1 RNA binding domain protein [Streptococcus sp. C150]
          Length = 710

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ DD    +    + E++              V +  +G
Sbjct: 592 LGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLELK-----------DLSVGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D +  K+ 
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHISEMSKNFVNHPSQVVSVGDLVTVWVSKIDLEHEKLN 700

Query: 685 LSM 687
           LS+
Sbjct: 701 LSL 703


>gi|308801060|ref|XP_003075311.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
 gi|116061865|emb|CAL52583.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
          Length = 250

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 21/181 (11%)

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRGI----- 577
           R   L +      E++ +    T  V  +      +  +++R  +      IR +     
Sbjct: 39  RRMELAKAWDRCREAQAEDAALTGEVLSVNRGGLLVEVEKLRGFVPQSHIGIRTLNREEL 98

Query: 578 --VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
              +     + +D++    + S  LA    + E         EV  + +G V  V  +GA
Sbjct: 99  VGQQLPFKFIEVDEEKNRLVLSHRLATDMVSAEG-------LEVGDVVEGMVQAVKPYGA 151

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV   G + GL+HISQ+S ER+    +V+  GD + V ++  D +RG++ LS K ++QN 
Sbjct: 152 FVDV-GGQSGLLHISQISHERIVAVENVLSAGDRIKVLVMSKDAERGRLSLSTKKLEQNH 210

Query: 695 G 695
           G
Sbjct: 211 G 211


>gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
 gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
          Length = 259

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +    R    +R I  Q GL+++ +GS+    G T+ I     G R+ +      +   
Sbjct: 35  GMSRQDRLPLAIRPIFLQPGLIEQANGSAYIETGKTK-IACAIYGPRQSKNV----AFHD 89

Query: 371 RNDFMMHYNFLPCATGEVS-RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +    +   F P +  +    +     R I       +AI P +        T+ +   +
Sbjct: 90  KGRLNVELKFAPFSCPKRRAPIRDAEDRSI--AMAIHQAILPSVRLETLPKSTVDVFITV 147

Query: 430 TESDG--SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            E DG      A    +S AL+DAG+ +   VA  +  ++ +     I  D S  E    
Sbjct: 148 LEEDGIEGCVAAGSVAASAALVDAGIEVFGIVASTSAAVIGEE----IWLDPSEQESSQS 203

Query: 488 HMDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
              F +A     + IT++  + ++     + ++ A++  ++  + I   +++ L E
Sbjct: 204 KGTFVLATMPALNTITSIWQNGEMAP---DQVLKAMEICEKQCVDIHTVVAERLRE 256



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 13/213 (6%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG--QDFFPLTVNYQERTYAVG 71
           RP+ L+ G I  Q++G+     G+T +   +   R  K+    D   L V  +   ++  
Sbjct: 47  RPIFLQPGLI-EQANGSAYIETGKTKIACAIYGPRQSKNVAFHDKGRLNVELKFAPFSC- 104

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVV 129
                  RR       +  I+  I ++I P        K+   V I V++ D        
Sbjct: 105 -----PKRRAPIRDAEDRSIAMAIHQAILPSVRLETLPKSTVDVFITVLEEDGIEGCVAA 159

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVE 189
             VAASAAL+ +G+   G V       I  +  L+P   E   S   FV  T  A+  + 
Sbjct: 160 GSVAASAALVDAGIEVFGIVASTSAAVIGEEIWLDPSEQESSQSKGTFVLATMPALNTIT 219

Query: 190 --LEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
              +  +++ D VL A+     +C  +   +++
Sbjct: 220 SIWQNGEMAPDQVLKAMEICEKQCVDIHTVVAE 252


>gi|125597126|gb|EAZ36906.1| hypothetical protein OsJ_21250 [Oryza sativa Japonica Group]
          Length = 1052

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVV 664
           +   R     P + ++ +G+V  + D G FV       R+GLVH+S++   R+A     V
Sbjct: 85  KAEERVRDGDPGLYQVCRGKVTGLADAGCFVRLDDARGREGLVHVSEMPGRRIA-----V 139

Query: 665 KEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K G  V+VK++    R  + LSM+ VDQ+TGK ++
Sbjct: 140 KRGQEVFVKIVSVQGRN-LGLSMRDVDQDTGKDLL 173


>gi|306824877|ref|ZP_07458221.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433088|gb|EFM36060.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 119

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++D
Sbjct: 1   MKIGDKLNGRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+  GK  LS++ +++ 
Sbjct: 61  FDEYTGKASLSIRTLEEE 78


>gi|293365818|ref|ZP_06612523.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307703312|ref|ZP_07640257.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315613501|ref|ZP_07888408.1| S1 RNA binding domain protein [Streptococcus sanguinis ATCC 49296]
 gi|291315642|gb|EFE56090.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|307623178|gb|EFO02170.1| S1 RNA binding domain protein [Streptococcus oralis ATCC 35037]
 gi|315314192|gb|EFU62237.1| S1 RNA binding domain protein [Streptococcus sanguinis ATCC 49296]
          Length = 119

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++D
Sbjct: 1   MKIGDKLNGRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIYDILKIGDEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+  GK  LS++ +++ 
Sbjct: 61  FDEYTGKASLSIRTLEEE 78


>gi|300214892|gb|ADJ79308.1| Transcription accessory protein [Lactobacillus salivarius CECT
           5713]
          Length = 345

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%)

Query: 570 GGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP----------- 617
           G   I   + +    K  ID++  V      +  +       R    +P           
Sbjct: 209 GTNTINDKLAKFNVEKYAIDNELEVITVKDIVKSLMKPGRDGRESMPMPLLKSDILKIED 268

Query: 618 -EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +     +G V  V+DFGAFV     +DGLVH+S+LS + V+   D+V  G  V V + D
Sbjct: 269 LKAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDIVAVGQIVTVWVED 328

Query: 677 FD-DRGKIKLSM 687
            D +R +I+L+M
Sbjct: 329 VDLNRKRIQLTM 340


>gi|55822633|ref|YP_141074.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
 gi|55738618|gb|AAV62259.1| transcriptional regulator, putative [Streptococcus thermophilus
           CNRZ1066]
          Length = 710

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ DD    +    + E++              V +  +G
Sbjct: 592 LGLGQETLKDIIADLLKLGRDLRDDFEAPVLRQDVLELK-----------DLSVGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D +  K+ 
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKIDLEHEKLN 700

Query: 685 LSM 687
           LS+
Sbjct: 701 LSL 703


>gi|298208633|ref|YP_003716812.1| 30S ribosomal protein S1 [Croceibacter atlanticus HTCC2559]
 gi|83848556|gb|EAP86425.1| 30S ribosomal protein S1 [Croceibacter atlanticus HTCC2559]
          Length = 619

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 192 QIDVKPIRDYDAYVGKTMEFKV----VKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 245

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   +++V+    + V +LD
Sbjct: 246 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEIVELDQKLNVVILD 304

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD D+ +I+L +K + ++  + +
Sbjct: 305 FDEDKTRIQLGLKQLSKHPWEAL 327



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ D  +V    KG+VV + D+GAF+      +GL+H+S++S    +    D V 
Sbjct: 321 KHPWEALGDELKVGDTVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVN 380

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V  ++L  D +  K+ L MK + Q+    I
Sbjct: 381 VGDEVEAQILTMDKEDRKMSLGMKQLSQDPWTDI 414



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   ++G V    +FG FV      DGL++IS LS  +++   S+   
Sbjct: 408 QDPWTDITSKYPVGSRHEGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCN 467

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GD + V +L+ D  G+ + L  K ++ N  
Sbjct: 468 VGDKLEVVVLELDVEGRKLSLGHKQIEDNPW 498


>gi|149513007|ref|XP_001514955.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8,
           partial [Ornithorhynchus anatinus]
          Length = 468

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSD 662
           + + R   + P +  IY+G+V  +M FG FV   G R   +GLVHIS+L  E RVA  +D
Sbjct: 230 KHVDRPPPEEPSIGDIYQGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVAD 289

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMK 688
           VV +G  V VK+L F    K  LSMK
Sbjct: 290 VVSKGQRVKVKVLSFTGT-KTSLSMK 314


>gi|313892642|ref|ZP_07826229.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           microaerophilus UPII 345-E]
 gi|313119039|gb|EFR42244.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Dialister
           microaerophilus UPII 345-E]
          Length = 629

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             K+   D    +I+ +    +        +     +V+ + + +VVK++DFG  V    
Sbjct: 516 DVKIKSFDKEKQRISFTHKECLP---NPWETAIHDHDVDDVVEAKVVKILDFGVIVEMND 572

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
              GL+HI++++ +   K +DV K GD + V+++  D +R +I  S+
Sbjct: 573 GLTGLLHINEMTEDHNKKPADVCKIGDVLTVRIISIDEERKRISFSL 619



 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 13/186 (6%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +++  A  + +      +  +   L      L  F P  +        +++++G    
Sbjct: 368 DWDVIEDAYNKGEPVECEGIEAIKVGLLVQLKSLRGFIPLSQGDLRFVHSLQSLVGK--- 424

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVM 631
                  +  AK+   D    ++  S  A +E  R   +  +        + KG V K+M
Sbjct: 425 -------KFEAKILEVDRVKNRLVLSRKAVLEGQRNSEMDELEVAFNNGDVLKGTVKKIM 477

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
            +GAFV      +GL+HIS +S +++AK  DV+     + VK+  FD ++ +I  + K  
Sbjct: 478 PYGAFVGI-NGVEGLLHISDISWKKIAKVEDVLSPEQVIDVKIKSFDKEKQRISFTHKEC 536

Query: 691 DQNTGK 696
             N  +
Sbjct: 537 LPNPWE 542



 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +  I        + +G VV + D  A++ F    + ++   + S    A   DV+K GDT
Sbjct: 282 MEDINLDVHKGSVVEGTVVDLSDDKAYISFGYKTEAVLPAHEYSYPAPASLKDVLKVGDT 341

Query: 670 VWVKLLD 676
           + V+++ 
Sbjct: 342 IRVQVVS 348


>gi|223039564|ref|ZP_03609851.1| S1 RNA binding domain protein [Campylobacter rectus RM3267]
 gi|222879135|gb|EEF14229.1| S1 RNA binding domain protein [Campylobacter rectus RM3267]
          Length = 556

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++         +   + KG V  V +FGAFV   GA +GL+H    S +R  K  D+ K 
Sbjct: 362 KKPFDEFKAKFKEGDVTKGVVTSVTNFGAFVRI-GAVEGLLHNEDASWDRNDKCKDLFKI 420

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GD + VK++  D +  KI LS K + Q+ 
Sbjct: 421 GDEIEVKIIKIDANEQKISLSQKDLKQSP 449



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K++ D+   +      L E    +    +I+ V E   + +G V K+  +G FV   G 
Sbjct: 168 IKIDKDEQSIIVSRKKLLDEDRKRK--REAISAVAENTDVIEGVVKKITTYGMFVDV-GG 224

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            DGLVH S++S +       + KEGD V V+++ +D+  K + LS+K    +  + I
Sbjct: 225 VDGLVHYSEISYKGPVNPGSIYKEGDKVLVRVIKYDNEKKHLSLSIKAATPDPWEEI 281



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 16/140 (11%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+ +++  +G ++   I+     K++ ++                A            V 
Sbjct: 412 DKCKDLFKIGDEIEVKII-----KIDANEQKISLSQKDLKQSPVQA------YAKKFNVG 460

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I  G++  + DFG FV      D L+    L       +++ +   D +   +   D++
Sbjct: 461 DIVTGKIRDIKDFGVFVELGDNVDALIRKEDLGNV----SAESLNINDNIEAAIAFIDEK 516

Query: 681 G-KIKLSMKVVDQNTGKPIV 699
             +I+LS++ + +   + ++
Sbjct: 517 KNRIRLSIRRLARQKEREVL 536



 Score = 38.4 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +  A+  + E++ A  +  S     E +    G +V + D   FV+     +G++ IS++
Sbjct: 10  LSKANDDIEEVDFAAMLEESFKKTEEDSD---GIIVDIKDSEVFVNVGKKSEGILDISEI 66

Query: 653 STERVAKTSDVVKEGDTVWVKLLD 676
             E         K GDT+ V +  
Sbjct: 67  QDE---NGEIKFKVGDTIKVVITG 87


>gi|291522082|emb|CBK80375.1| Transcriptional accessory protein [Coprococcus catus GD/7]
          Length = 713

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVW 671
                +   I KG V  V+DFG FV     +DGLVHISQL+ ++ V    ++V  GD V 
Sbjct: 634 EMKDLKPGMILKGTVRNVIDFGVFVDIGVHQDGLVHISQLTNKKFVRHPMEIVSVGDVVE 693

Query: 672 VKLLDFD-DRGKIKLSM 687
           VK++  D  + +I+L+M
Sbjct: 694 VKVMSVDLAKKRIQLTM 710


>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 140

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 14/152 (9%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR + T+R +S ++G L    GS+L+  G TQ +  V  G     Q        Q  
Sbjct: 3   RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVH-GPVAPRQ-------PQHE 54

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                 + +  +   V+ +      E        +A+   L         ++IV +I  +
Sbjct: 55  TQKAKISIIIKSGTTVNTL------EREWEAFITKALTACLVTEQYPRSVIQIVLQILSA 108

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           DGS   A + G+  ALMDAG+ +      +  
Sbjct: 109 DGSVLGAALNGAVAALMDAGIAMKVLPVAVTC 140



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RPL  E G +   +DG+ L   G T VLA V   V  R  +       +++  +      
Sbjct: 13  RPLSCELGTL-HNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISIIIK-----S 66

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G       R      E E  I++ +   +  +  +  ++  Q+++ ++  D        +
Sbjct: 67  GTTVNTLER------EWEAFITKALTACL--VTEQYPRSVIQIVLQILSADGSVLG--AA 116

Query: 131 MVAASAALMLSGLPFEG-PVV 150
           +  A AALM +G+  +  PV 
Sbjct: 117 LNGAVAALMDAGIAMKVLPVA 137


>gi|225868211|ref|YP_002744159.1| transcription accessory protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701487|emb|CAW98645.1| putative transcription accessory protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 710

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           R ++ A+  +++   + +G + ++ I+        ++ DD    +               
Sbjct: 577 RAKLQAVNLEEMAEQLMLGQETLKDIIADLLKPGRDLRDDFEAPVLR-----------KD 625

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                   V +  +G V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V
Sbjct: 626 ILSVKDLAVGQRLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSEAFVNHPSQVVSVGDLV 685

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V +   D DR K+ LS+
Sbjct: 686 TVWVSKVDLDRHKVNLSL 703


>gi|160903054|ref|YP_001568635.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360698|gb|ABX32312.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 532

 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             +++ +   +  I +G V K++ FG  V      +GLVH +++   R  + SD+V  GD
Sbjct: 255 PWKTVDEKYPIGSIVQGTVTKILPFGFTVKIDEGLEGLVHETEIFWGRKGRISDLVNVGD 314

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            V VK+L+ D +  KI LS K V  +  + I
Sbjct: 315 DVQVKILNIDKENKKINLSYKQVSGDPWENI 345



 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E I    +  E   +  G V  + +FGAFV      +GL+  S++S +      D +K
Sbjct: 166 AEEKISQTFNEYEEGMVIDGVVEDIKNFGAFVRLNDHLNGLIPASEVSWDEKISIKDYLK 225

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G  V   ++  D ++ +I LS+K + +N  K +
Sbjct: 226 VGQKVKALIIKLDREKKRISLSLKRLKENPWKTV 259



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +    K+   D    KI  S         E I           I  G V KV+D GA + 
Sbjct: 314 DDVQVKILNIDKENKKINLSYKQVSGDPWENIEEKYYE---GNIVTGTVEKVLDNGAIIK 370

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKE-GDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
                 G +H+S+LS + V   S V+ E        +    D  +++LS++   +N  K
Sbjct: 371 IDEGITGFLHVSELSWDFVDDISTVLNEKQKIKVKIIKIDKDNKRMRLSVRETKENPWK 429


>gi|327400918|ref|YP_004341757.1| translation initiation factor 2 subunit alpha [Archaeoglobus
           veneficus SNP6]
 gi|327316426|gb|AEA47042.1| Translation initiation factor 2 subunit alpha [Archaeoglobus
           veneficus SNP6]
          Length = 272

 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   +I  G V +V+DFGAFV       R+GLVHIS+++   +    D VK+G  V  K+
Sbjct: 20  PAKGEIVIGTVTRVLDFGAFVSLDEYEGREGLVHISEVAPGWIKDIRDYVKKGQKVVCKV 79

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           LD +  RG I LS+K V++   + 
Sbjct: 80  LDVNPKRGHIDLSIKDVNERQKRE 103


>gi|154175267|ref|YP_001407858.1| 30S ribosomal protein S1 [Campylobacter curvus 525.92]
 gi|112803420|gb|EAU00764.1| S1 RNA binding domain protein [Campylobacter curvus 525.92]
          Length = 557

 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + +D D    + S      +  ++   ++ ++ +   + +G + K+  +G FV   G  D
Sbjct: 168 IKVDKDENSIVVSRKKILDDDRKKRKEALANIVDNADVIEGTIKKITTYGMFVDV-GGVD 226

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           GLVH S++S +     S +  EGD V VK++ +D+  + + LS+K    +  + I+
Sbjct: 227 GLVHYSEISYKGPVNPSSLYNEGDKVLVKVISYDNEKRHLSLSIKAAMPDPWEEIL 282



 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 22/188 (11%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRV---------EIMAIPPDQIRNVIGMGGKVIRGI 577
            R  IL++  K   E+   + +    +           M +    +  ++       +G 
Sbjct: 180 SRKKILDDDRKKRKEALANIVDNADVIEGTIKKITTYGMFVDVGGVDGLVHYSEISYKGP 239

Query: 578 V---------EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           V         ++   KV   D+    ++ S  A +    E I S     EV    K  V 
Sbjct: 240 VNPSSLYNEGDKVLVKVISYDNEKRHLSLSIKAAMPDPWEEILSD--GLEVGDTIKVTVS 297

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
            +  +GAFV      +G +HIS++S ++ +    D + EG  + V++++ D +G ++++S
Sbjct: 298 NIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDHISEGQEIDVEVIEIDAKGHRLRVS 357

Query: 687 MKVVDQNT 694
           +K +    
Sbjct: 358 LKNLLPKP 365



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +FGAF+      +GL+H    S +R  K  D+ K GD V VK++  D+   KI LS+K +
Sbjct: 388 NFGAFIRI-DCVEGLLHNEDASWDRNDKCKDMFKPGDEVEVKIIKIDNAEQKISLSLKDL 446

Query: 691 DQNT 694
            Q+ 
Sbjct: 447 KQSP 450



 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++   +   V  I KG +  + DFG FV      D L+    L +  V      +K GD
Sbjct: 450 PVQEFANKFNVGDIVKGTIRDIKDFGVFVELGDNVDALIRKEDLGSVDVQS----LKIGD 505

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
            +   +   D++  +I+LS++ + +   + ++
Sbjct: 506 EIEAAIAFIDEKKNRIRLSIRRLAKQKEREVL 537


>gi|228478427|ref|ZP_04063035.1| protein tex [Streptococcus salivarius SK126]
 gi|228250106|gb|EEK09376.1| protein tex [Streptococcus salivarius SK126]
          Length = 710

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ DD    +    + E++              V +  +G
Sbjct: 592 LGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLELK-----------DLSVGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D +  K+ 
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKVDLEHEKLN 700

Query: 685 LSM 687
           LS+
Sbjct: 701 LSL 703


>gi|256425571|ref|YP_003126224.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
 gi|256040479|gb|ACU64023.1| RNA binding S1 domain protein [Chitinophaga pinensis DSM 2588]
          Length = 630

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           KV   ++       S  A IE+  E  R  I    E  ++ +G +  + DFGAF+   G 
Sbjct: 204 KVVKVNEAIRNAVVSHKALIESDIEQQRVDIISKLEKGQVLEGTIKNITDFGAFIDL-GG 262

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            DGL++I+ +S  R++  S+V++    + V +LDFDD + +I L  K +  +  
Sbjct: 263 LDGLLYITDISWGRISHPSEVLQMDQKINVVVLDFDDEKKRISLGYKQLTPHPW 316



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     ++  +KG V  +  +G FV       G++HIS LS  +R    S+  K 
Sbjct: 401 DPWATIETKFPLDSRHKGIVKNITPYGVFVELETGIGGMIHISDLSWIKRFNHPSEYTKV 460

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L  D D  K+ L  K ++++  
Sbjct: 461 GSEIEVVILGIDKDNRKLSLGHKQIEEDPW 490



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVW-VKLLDFDDR 680
            KG+VV + D+GAF+      +GLVH+S++S         +  K G+    V +    + 
Sbjct: 329 VKGKVVNIEDYGAFLEILPGVEGLVHVSEISWASTPINAKEFFKLGEEYEAVVVTLSKEE 388

Query: 681 GKIKLSMKVVDQNTGKPI 698
            K+ LS+K + ++    I
Sbjct: 389 RKMSLSIKQLTEDPWATI 406


>gi|322517097|ref|ZP_08069982.1| YhgF like protein [Streptococcus vestibularis ATCC 49124]
 gi|322124357|gb|EFX95865.1| YhgF like protein [Streptococcus vestibularis ATCC 49124]
          Length = 710

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ DD    +    + E++              V +  +G
Sbjct: 592 LGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLELK-----------DLSVGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D +  K+ 
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKVDLEHEKLN 700

Query: 685 LSM 687
           LS+
Sbjct: 701 LSL 703


>gi|256848177|ref|ZP_05553621.1| transcription accessory protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715237|gb|EEU30214.1| transcription accessory protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 724

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              D  +     +G V  V+DFGAFV      DGLVHISQL+ + +     VV  GD V 
Sbjct: 641 MTMDDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHISQLTKKFIRDPRQVVAVGDIVD 700

Query: 672 VKLLDFD-DRGKIKLSM 687
           V +L  D DR +I+L+M
Sbjct: 701 VWVLSVDHDRQRIQLTM 717


>gi|312867874|ref|ZP_07728079.1| S1 RNA binding domain protein [Streptococcus parasanguinis F0405]
 gi|311096629|gb|EFQ54868.1| S1 RNA binding domain protein [Streptococcus parasanguinis F0405]
          Length = 121

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV       GL+HIS++ +  V+   D++  G+ V+V+++D
Sbjct: 1   MKIGDKLEGTITGIQPYGAFVELESGVTGLIHISEIRSGYVSNIQDILSIGEKVFVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
            D+   K  LS++ +++   + I
Sbjct: 61  VDEYTNKASLSLRTLEETPQRSI 83


>gi|307297290|ref|ZP_07577096.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916550|gb|EFN46932.1| RNA binding S1 domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 122

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V  + +G V  V  FGA+V+  G  +G +HIS+++ E V    D +K G  V  K+
Sbjct: 1   MSVKVGTVVEGSVTSVKKFGAYVNLEGGEEGFIHISKVAREYVKNIEDYLKVGQKVEAKV 60

Query: 675 LDFDDRGKIKLSMKVV 690
           L     GK +LS+K +
Sbjct: 61  LGTTKDGKWELSIKDL 76


>gi|170288939|ref|YP_001739177.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|281412543|ref|YP_003346622.1| RNA binding S1 domain protein [Thermotoga naphthophila RKU-10]
 gi|170176442|gb|ACB09494.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
 gi|281373646|gb|ADA67208.1| RNA binding S1 domain protein [Thermotoga naphthophila RKU-10]
          Length = 124

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V ++ KG+V K++ +GAFV   G   G +HIS++S   V +  D + EG  +  K++ 
Sbjct: 1   MKVGELVKGKVSKIVRYGAFVDIEGGERGFIHISKISKNYVKRIEDYLHEGQEISAKVIG 60

Query: 677 FDDRGKIKLSMKVVDQNTGK 696
               G  +LS+K +++ T K
Sbjct: 61  RARNGGWELSLKDLEEETPK 80


>gi|306825121|ref|ZP_07458463.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432557|gb|EFM35531.1| S1 RNA binding domain protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 709

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   D++
Sbjct: 693 TEREKVNLSLLAPDES 708


>gi|304385510|ref|ZP_07367855.1| YhgF like protein [Pediococcus acidilactici DSM 20284]
 gi|304328717|gb|EFL95938.1| YhgF like protein [Pediococcus acidilactici DSM 20284]
          Length = 724

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+L    V   SDVV  GD V V +   D  R 
Sbjct: 653 LQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVESVDTKRS 712

Query: 682 KIKLSMKVVDQN 693
           +I+L+M   ++ 
Sbjct: 713 RIQLTMIPAEEQ 724


>gi|296876119|ref|ZP_06900173.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296432830|gb|EFH18623.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 718

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            + +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   
Sbjct: 641 HIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDLVTVWVKKI 700

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R K+ LS+   +++
Sbjct: 701 DVEREKVNLSLVAPNES 717


>gi|313149392|ref|ZP_07811585.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313138159|gb|EFR55519.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 69

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GKIKLSMK 688
           M +GAFV F   +DGL+HIS++  +R+    +  +KEGD + VKL+D D + GK KLS K
Sbjct: 1   MPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRK 60

Query: 689 VVDQNTGK 696
           V+     K
Sbjct: 61  VLLPRPEK 68


>gi|169833704|ref|YP_001694361.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996206|gb|ACA36818.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 790

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 714 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 773

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 774 TEREKVNLSLLAPNET 789


>gi|332884599|gb|EGK04856.1| hypothetical protein HMPREF9456_00609 [Dysgonomonas mossii DSM
           22836]
          Length = 598

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 158 QIDVKPIRDYDVFVGKTMEFKV----VKINHEFKNVVVSHKALIEAELEQQK--KDIISK 211

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV    +VVK  + + V +LD
Sbjct: 212 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVQHPEEVVKLDEKINVVILD 270

Query: 677 F-DDRGKIKLSMKVVDQNTG 695
           F DD+ +I L +K +  +  
Sbjct: 271 FDDDKKRIALGLKQLTPHPW 290



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +   +  +V    +FG F       DGL+HIS LS  +++   S+V   
Sbjct: 375 DPWENIEEKYPIGSQHTAKVRNFTNFGVFAEIEEGVDGLIHISDLSWTKKIKHPSEVTAI 434

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 435 GADIEVQVLEIDKENRRLSLGHKQLEENPW 464



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +++   +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 288 HPWDALSAELKVGDKVKGRVVVMADYGAFIEIAPGVEGLIHVSEMSWAQHLRSAQDFMKV 347

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D D  K+ L +K +  +  + I
Sbjct: 348 GDEVEAVVLTLDRDERKMSLGIKQLKPDPWENI 380


>gi|167044666|gb|ABZ09337.1| putative S1 RNA binding domain protein [uncultured marine
           microorganism HF4000_APKG7H23]
          Length = 379

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                     + ++  G V K+ DFGAF       +GL+H+S+LS   +    +VV+ GD
Sbjct: 284 PWTQAAQQFALGQLVSGTVTKLADFGAFTRVEETVEGLIHVSELSDRHIRHPREVVQVGD 343

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           ++ ++++  D +R +I LS++ V+   GK
Sbjct: 344 SLTLRIVSLDLERHRIGLSLRQVEDPEGK 372



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNI------DDDGTVKIASSSLAEIEAAREMIR 611
           +P  Q+   I  GG     + ++ G +V++         G   ++  ++   +   +  +
Sbjct: 143 VPLSQMVLSIQAGGDTAEALAQRVGEEVSLKVLEVNRRRGRAVLSERAMLREQREEQREQ 202

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              ++ E  ++ KG V  +  FGAFV   GA DGL+HIS+LS   V+   +VV+    V 
Sbjct: 203 LFGELQEG-EVRKGVVTGISSFGAFVDIGGA-DGLIHISELSWSPVSSVEEVVQVSQEVE 260

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTG 695
           V +L  D +  +I LS++ +     
Sbjct: 261 VYILRVDREHRRIALSLRQLSPTPW 285


>gi|57866458|ref|YP_188133.1| general stress protein 13 [Staphylococcus epidermidis RP62A]
 gi|251810328|ref|ZP_04824801.1| RNA binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875550|ref|ZP_06284421.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|293368331|ref|ZP_06614959.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637116|gb|AAW53904.1| general stress protein 13 [Staphylococcus epidermidis RP62A]
 gi|251806210|gb|EES58867.1| RNA binding protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295577|gb|EFA88100.1| S1 RNA binding domain protein [Staphylococcus epidermidis SK135]
 gi|291317578|gb|EFE57996.1| general stress protein 13 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319401767|gb|EFV89975.1| S1 RNA binding domain protein [Staphylococcus epidermidis FRI909]
 gi|329726852|gb|EGG63312.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU144]
 gi|329736797|gb|EGG73062.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU028]
 gi|329737607|gb|EGG73853.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU045]
          Length = 126

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSI 65

Query: 678 DDRGKIKLSMKVVD 691
           DD GK+ LS+K  D
Sbjct: 66  DDEGKLNLSLKDND 79


>gi|320354873|ref|YP_004196212.1| 30S ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
 gi|320123375|gb|ADW18921.1| SSU ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
          Length = 363

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 11/180 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A Q        +  E+    S +      F P  ++     +     +         
Sbjct: 73  LEEAFQSGIPVEGKVTGEVKGGFSVTVAGQRGFCPYSQMDIRKVENAEEYLEK------- 125

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
               T   +     G   I S+   + E  ++   ++           G+V  + +FGAF
Sbjct: 126 --IMTFKIIEYGSQGRNIILSARAVQEEKRQQEREALKARLNEGMQVSGEVTSIREFGAF 183

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V   G  DGL+ +S+L+  +  K  DV++ G  V V +   D D+ +I LS++   ++  
Sbjct: 184 VDI-GGIDGLIPLSELAWGQTDKVEDVLQRGQQVEVIIKRLDWDKDRISLSLRETTEDPW 242



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 34/255 (13%)

Query: 451 AGVPISKPVAGIAMGLVKDGDDFI------ILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
           +G+P+   V G   G                  DI   E+   +++         I    
Sbjct: 79  SGIPVEGKVTGEVKGGFSVTVAGQRGFCPYSQMDIRKVENAEEYLE---KIMTFKIIEYG 135

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP----- 559
              +   +S   +    +Q +R  L         +S     + EF   V+I  I      
Sbjct: 136 SQGRNIILSARAVQEEKRQQEREALKARLNEGMQVSGEVTSIREFGAFVDIGGIDGLIPL 195

Query: 560 -------PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                   D++ +V+  G +V   I      K    D  ++ +  ++      A      
Sbjct: 196 SELAWGQTDKVEDVLQRGQQVEVIIKRLDWDK----DRISLSLRETTEDPWNKALTQY-- 249

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVW 671
                 +  +++G+V ++  FGAFV      DGL+HIS+L    R+    +V++ G  + 
Sbjct: 250 -----PIGSVHQGKVSRLAAFGAFVTLEPGIDGLLHISKLGGGRRIHHPREVLEAGQELT 304

Query: 672 VKLLDFD-DRGKIKL 685
           VK+   D ++ +I L
Sbjct: 305 VKIESIDREQKRIAL 319


>gi|325298110|ref|YP_004258027.1| RNA binding S1 domain-containing protein [Bacteroides salanitronis
           DSM 18170]
 gi|324317663|gb|ADY35554.1| RNA binding S1 domain protein [Bacteroides salanitronis DSM 18170]
          Length = 596

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPHEVVQLDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 434 GADIDVVVLEIDKENRRLSLGHKQLEENPW 463



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               S+    +V    KG+VV + D+GAFV      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDSLDPNLKVGDHVKGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD +   +L  D D  K+ L +K +  +  + I
Sbjct: 347 GDEIEAVILTLDRDERKMSLGIKQLKPDPWETI 379


>gi|167041245|gb|ABZ06001.1| putative S1 RNA binding domain protein [uncultured marine
           microorganism HF4000_005D21]
 gi|167045749|gb|ABZ10395.1| putative S1 RNA binding domain protein [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 571

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E    R+  + I+ + E   I  G +  + ++GAFV      D L+HI+
Sbjct: 175 GNIVLSRRAILEKILVRDRDKIISKLKEG-DIVSGTIKNLTEWGAFVDL-NGVDALLHIT 232

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            +S  R+ K +D++  G ++  K++  ++   KI L +K + ++  K ++
Sbjct: 233 DISWRRINKPADLLSIGQSIKAKIIKIEEGTKKISLGVKQLTEDPYKKVI 282



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +  I +   AK+   ++GT KI+       E   +  + + D  EV K Y   +  V D+
Sbjct: 245 LLSIGQSIKAKIIKIEEGTKKISLGVKQLTE---DPYKKVIDSYEVGKNYTAIITNVQDY 301

Query: 634 GAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G F       +GL+H S+LS  ++      V+     + V++L+ D ++ ++ LS K   
Sbjct: 302 GCFAKLEEGLEGLIHQSELSWTKKNIHPGKVLSTSQKIQVQILEKDMEKRRLSLSYKNTL 361

Query: 692 QNTG 695
            N  
Sbjct: 362 VNPW 365



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 624 KGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +G V  + D+G F+       DG++H   L+        +  K+   +  K+L+ + ++ 
Sbjct: 379 EGVVKNITDYGLFISVKDSELDGMIHYKDLNWSEKESELEKYKKNQLIKFKILEINQEKE 438

Query: 682 KIKLSMKVVDQNT 694
           KI+L +K + Q+ 
Sbjct: 439 KIRLGIKQLTQDP 451



 Score = 39.1 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI--SQLSTERVAKTSDVVKEGDTVWVKL 674
            +++ +    VV   + G  V + G +D L+ I  SQL+ E   +       GD V   +
Sbjct: 458 KKISDVVTAIVVSSSNDGIHV-YAGNKDLLLLIKRSQLAKEPENQRPSRWARGDRVDCMI 516

Query: 675 LDFDDRGK-IKLSMKVVDQNTGK 696
           ++ D   + + LS+KV+++   K
Sbjct: 517 IELDKENRKVVLSIKVLEEQEQK 539


>gi|312863267|ref|ZP_07723505.1| Tex-like protein N-terminal domain protein [Streptococcus
           vestibularis F0396]
 gi|311100803|gb|EFQ59008.1| Tex-like protein N-terminal domain protein [Streptococcus
           vestibularis F0396]
          Length = 710

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ DD    +    + E++              V +  +G
Sbjct: 592 LGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLELK-----------DLSVGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS++S   V   S VV  GD V V +   D +  K+ 
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKVDLEHEKLN 700

Query: 685 LSM 687
           LS+
Sbjct: 701 LSL 703


>gi|21282566|ref|NP_645654.1| hypothetical protein MW0837 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483115|ref|YP_040339.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49485731|ref|YP_042952.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651646|ref|YP_185827.1| general stress protein 13 [Staphylococcus aureus subsp. aureus COL]
 gi|82750570|ref|YP_416311.1| hypothetical protein SAB0822 [Staphylococcus aureus RF122]
 gi|148267389|ref|YP_001246332.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393442|ref|YP_001316117.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221037|ref|YP_001331859.1| hypothetical protein NWMN_0825 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|221140423|ref|ZP_03564916.1| hypothetical protein SauraJ_02161 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253316805|ref|ZP_04840018.1| hypothetical protein SauraC_11790 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732690|ref|ZP_04866855.1| RNA binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005745|ref|ZP_05144346.2| hypothetical protein SauraM_04730 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425004|ref|ZP_05601431.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427670|ref|ZP_05604069.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430305|ref|ZP_05606688.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433002|ref|ZP_05609362.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435906|ref|ZP_05611954.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|257795310|ref|ZP_05644289.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9781]
 gi|258406959|ref|ZP_05680112.1| S1 RNA-binding protein [Staphylococcus aureus A9763]
 gi|258421927|ref|ZP_05684848.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258424358|ref|ZP_05687238.1| general stress protein 13 [Staphylococcus aureus A9635]
 gi|258435324|ref|ZP_05689063.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258441536|ref|ZP_05690896.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8115]
 gi|258447235|ref|ZP_05695384.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6300]
 gi|258449995|ref|ZP_05698093.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|258452093|ref|ZP_05700109.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|258455508|ref|ZP_05703467.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|269202570|ref|YP_003281839.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893982|ref|ZP_06302213.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|282903492|ref|ZP_06311383.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905270|ref|ZP_06313127.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908250|ref|ZP_06316081.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910531|ref|ZP_06318335.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913727|ref|ZP_06321516.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282916205|ref|ZP_06323967.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918653|ref|ZP_06326390.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282922234|ref|ZP_06329929.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|282923643|ref|ZP_06331323.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282927178|ref|ZP_06334800.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A10102]
 gi|283770020|ref|ZP_06342912.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957693|ref|ZP_06375146.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284023882|ref|ZP_06378280.1| general stress protein 13 [Staphylococcus aureus subsp. aureus 132]
 gi|293500769|ref|ZP_06666620.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509720|ref|ZP_06668431.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524307|ref|ZP_06670994.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294850230|ref|ZP_06790966.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|295405760|ref|ZP_06815569.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8819]
 gi|295427438|ref|ZP_06820073.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296275850|ref|ZP_06858357.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MR1]
 gi|297208410|ref|ZP_06924840.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245351|ref|ZP_06929222.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8796]
 gi|297590202|ref|ZP_06948841.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|300912486|ref|ZP_07129929.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381492|ref|ZP_07364142.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|21204004|dbj|BAB94702.1| MW0837 [Staphylococcus aureus subsp. aureus MW2]
 gi|49241244|emb|CAG39923.1| putative S1 RNA binding domain [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244174|emb|CAG42600.1| putative S1 RNA binding domain [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285832|gb|AAW37926.1| general stress protein 13 [Staphylococcus aureus subsp. aureus COL]
 gi|82656101|emb|CAI80510.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|147740458|gb|ABQ48756.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945894|gb|ABR51830.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373837|dbj|BAF67097.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|253729301|gb|EES98030.1| RNA binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272574|gb|EEV04697.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275863|gb|EEV07336.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279082|gb|EEV09693.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282417|gb|EEV12552.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285097|gb|EEV15216.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|257789282|gb|EEV27622.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9781]
 gi|257841498|gb|EEV65939.1| S1 RNA-binding protein [Staphylococcus aureus A9763]
 gi|257842260|gb|EEV66688.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257845371|gb|EEV69405.1| general stress protein 13 [Staphylococcus aureus A9635]
 gi|257848985|gb|EEV72968.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257852326|gb|EEV76252.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8115]
 gi|257853983|gb|EEV76937.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6300]
 gi|257856915|gb|EEV79818.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A6224]
 gi|257860308|gb|EEV83140.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|257862326|gb|EEV85095.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262074860|gb|ACY10833.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940457|emb|CBI48834.1| putative S1 RNA binding domain [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314511|gb|EFB44901.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317787|gb|EFB48159.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319645|gb|EFB49993.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322759|gb|EFB53081.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325923|gb|EFB56231.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327915|gb|EFB58197.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331677|gb|EFB61189.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590867|gb|EFB95942.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A10102]
 gi|282593524|gb|EFB98518.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|282596447|gb|EFC01408.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           C160]
 gi|282763468|gb|EFC03597.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8117]
 gi|283460167|gb|EFC07257.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470154|emb|CAQ49365.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283791144|gb|EFC29959.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921270|gb|EFD98331.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095774|gb|EFE26035.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467817|gb|EFF10332.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           M809]
 gi|294823004|gb|EFG39437.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|294969195|gb|EFG45215.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8819]
 gi|295128826|gb|EFG58457.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296887149|gb|EFH26052.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177654|gb|EFH36904.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A8796]
 gi|297576501|gb|EFH95216.1| general stress protein 13 [Staphylococcus aureus subsp. aureus MN8]
 gi|298694194|gb|ADI97416.1| General stress protein 13 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886732|gb|EFK81934.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302332568|gb|ADL22761.1| S1 RNA-binding domain protein [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302750783|gb|ADL64960.1| S1 RNA-binding domain protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304339855|gb|EFM05799.1| general stress protein 13 [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438682|gb|ADQ77753.1| general stress protein 13 [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315130465|gb|EFT86452.1| hypothetical protein CGSSa03_03553 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315194487|gb|EFU24879.1| hypothetical protein CGSSa00_12210 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315197308|gb|EFU27646.1| hypothetical protein CGSSa01_00371 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|323440890|gb|EGA98598.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O11]
 gi|323443818|gb|EGB01430.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O46]
 gi|329313622|gb|AEB88035.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329726180|gb|EGG62650.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21189]
 gi|329728295|gb|EGG64734.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329733930|gb|EGG70252.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 125

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 5   KIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSI 64

Query: 678 DDRGKIKLSMKVVD 691
           DD GK+ LS+K  D
Sbjct: 65  DDEGKLNLSLKDND 78


>gi|242242245|ref|ZP_04796690.1| RNA binding protein [Staphylococcus epidermidis W23144]
 gi|242234304|gb|EES36616.1| RNA binding protein [Staphylococcus epidermidis W23144]
          Length = 126

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSI 65

Query: 678 DDRGKIKLSMKVVD 691
           DD GK+ LS+K  D
Sbjct: 66  DDEGKLNLSLKDND 79


>gi|242082121|ref|XP_002445829.1| hypothetical protein SORBIDRAFT_07g026490 [Sorghum bicolor]
 gi|241942179|gb|EES15324.1| hypothetical protein SORBIDRAFT_07g026490 [Sorghum bicolor]
          Length = 1071

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 587 IDDDGTVKIASSSLAE---IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA- 642
           I D G    AS        ++ A          PE+N++ +G++ +V D G FV      
Sbjct: 84  IPDSGPAPPASRGAGARGRVDKAAGAGADEDQEPELNQVRRGRITRVGDAGCFVRLGAGA 143

Query: 643 --RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
             R+GLVH+SQ+   R       V  G  V+VK++  D   K+ LSM+ VDQ+TG+ ++
Sbjct: 144 RGREGLVHVSQMPGGR----RATVTRGQEVFVKVVSVDGA-KLGLSMRDVDQDTGRDLL 197


>gi|319946581|ref|ZP_08020815.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
 gi|319746629|gb|EFV98888.1| S1 RNA binding domain protein [Streptococcus australis ATCC 700641]
          Length = 708

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  +G V  V+DFGAFV      DGL+HISQ+S + +   S VV  GD V V +   
Sbjct: 631 KIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISQMSQQFIKHPSQVVSVGDLVTVWVYKI 690

Query: 678 D-DRGKIKLSM 687
           D +R K+ LS+
Sbjct: 691 DLEREKVNLSL 701


>gi|315658717|ref|ZP_07911587.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
 gi|315496348|gb|EFU84673.1| general stress protein 13 [Staphylococcus lugdunensis M23590]
          Length = 126

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDDEGKL 71

Query: 684 KLSMKVVD 691
            LS+K  D
Sbjct: 72  NLSLKDND 79


>gi|303228873|ref|ZP_07315686.1| putative general stress protein 13 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516493|gb|EFL58422.1| putative general stress protein 13 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 133

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G V  +  FGAF+     + GLVHIS+++   V   +DV+K  D V VK+L  
Sbjct: 4   EVGSVLNGTVSGITKFGAFIDLGDKQTGLVHISEVAHGYVEDINDVLKVQDAVKVKVLSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D   KI LS++   +  
Sbjct: 64  DGS-KIGLSIRQTQEKP 79


>gi|289551215|ref|YP_003472119.1| General stress protein 13 [Staphylococcus lugdunensis HKU09-01]
 gi|289180747|gb|ADC87992.1| General stress protein 13 [Staphylococcus lugdunensis HKU09-01]
          Length = 126

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDDEGKL 71

Query: 684 KLSMKVVD 691
            LS+K  D
Sbjct: 72  NLSLKDND 79


>gi|313682012|ref|YP_004059750.1| SSU ribosomal protein s1p [Sulfuricurvum kujiense DSM 16994]
 gi|313154872|gb|ADR33550.1| SSU ribosomal protein S1P [Sulfuricurvum kujiense DSM 16994]
          Length = 551

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 93/254 (36%), Gaps = 44/254 (17%)

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISE----------------------NIMVMAL 521
           D L   D  + GT   IT+  M + +GGI                        +++ +  
Sbjct: 192 DALMEEDKVIQGTVKKITSYGMFVDVGGIDGLVHYNEISYKGPVNPSKLYKEGDVVNVKA 251

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRG 576
               + + H+   +  V S+   ++ E     + + +    I        +G   +    
Sbjct: 252 IAYDKDKRHLSLSIKAVQSDPWQEVEEALEEGDTITVTVSNIEPYGIFVDLGNDIEGFLH 311

Query: 577 IVEQTGAK--------------VNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           I E T  K              ++++  +   K     ++      +     T   +   
Sbjct: 312 ISEITWDKNIKHPKDYLTVGQEIDVEVIEINSKTHKLRVSYKRLQPKPFEEFTKKFKEGD 371

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G V  + DFGAFV   G  +GL+H   LS ++  K  + +K GD + VK+   + + 
Sbjct: 372 VVSGTVTSLTDFGAFVKV-GGVEGLLHNQDLSWDKNVKCKETLKVGDEIEVKIAKINAED 430

Query: 681 GKIKLSMKVVDQNT 694
            KI L+ K ++++ 
Sbjct: 431 EKISLNRKSLEESP 444



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +  +     I  + E +K+ +G V K+  +G FV   G  DGLVH +++S +     S +
Sbjct: 182 DERKRKKEVIDALMEEDKVIQGTVKKITSYGMFVDV-GGIDGLVHYNEISYKGPVNPSKL 240

Query: 664 VKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            KEGD V VK + +D   + + LS+K V  +  + +
Sbjct: 241 YKEGDVVNVKAIAYDKDKRHLSLSIKAVQSDPWQEV 276



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +E   AK+N +D+       S           I       ++N++ K  V  V DFG FV
Sbjct: 419 IEVKIAKINAEDEKISLNRKSLEES------PIDQFAAKHKMNEVVKATVRDVKDFGVFV 472

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
              G  D L+    L        ++ ++ G T+   +L  D  R +I+LS+K ++
Sbjct: 473 SLEGGVDALIRNEDLYPL----IAEELEIGQTIEAAILVIDAKRDRIRLSVKKLE 523


>gi|166367132|ref|YP_001659405.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
 gi|166089505|dbj|BAG04213.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
          Length = 330

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +   V ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNGLAVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHTVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG-----KPIV 699
            D + V ++D D +RG+I LS K ++   G     +P+V
Sbjct: 243 NDELKVMIIDLDAERGRISLSTKQLEPEPGDMLKNRPLV 281



 Score = 39.5 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + + ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DVVAGTVFSMEPRGALIDIGAKTAAFIPVQEMSINRVDNPEEVLQPNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|55981717|ref|YP_145014.1| hypothetical protein TTHA1748 [Thermus thermophilus HB8]
 gi|55773130|dbj|BAD71571.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 125

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           FGAFV   G   GLVHISQ++ E V    D + EGD V V +   D +G++ LS+K +
Sbjct: 19  FGAFVELAGGEQGLVHISQIAHEYVTNVRDYLNEGDIVQVLIKGRDAKGRLDLSIKDL 76


>gi|296274213|ref|YP_003656844.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098387|gb|ADG94337.1| Tex-like protein [Arcobacter nitrofigilis DSM 7299]
          Length = 702

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-DR 680
             G V  + DFGAFV      DG++HISQ+S +RV+  S+++     +  +K++  D ++
Sbjct: 635 VSGIVRNITDFGAFVDIGLKNDGMIHISQMSEKRVSHPSEILSINQQLKKIKVISIDLEK 694

Query: 681 GKIKLSMK 688
            K+ LS+K
Sbjct: 695 NKVGLSLK 702


>gi|183603130|ref|ZP_02964306.1| protein tex [Streptococcus pneumoniae CDC1087-00]
 gi|183570991|gb|EDT91519.1| protein tex [Streptococcus pneumoniae CDC1087-00]
          Length = 709

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+  +++ 
Sbjct: 693 TEREKVNLSLLALNET 708


>gi|119572064|gb|EAW51679.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_d [Homo
           sapiens]
          Length = 945

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 631 MDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           M FG FV   G R   +GLVHIS+L  E RVA  +DVV +G  V VK+L F    K  LS
Sbjct: 1   MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT-KTSLS 59

Query: 687 MKVVDQNTGKPI 698
           MK VDQ TG+ +
Sbjct: 60  MKDVDQETGEDL 71


>gi|159028923|emb|CAO87384.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 330

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +   V ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNGLAVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHTVFNV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG-----KPIV 699
            D + V ++D D +RG+I LS K ++   G     +P+V
Sbjct: 243 NDELKVMIIDLDAERGRISLSTKQLEPEPGDMLKNRPLV 281



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            +  G V  +   GA +         + + ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DVVAGTVFSMEPRGALIDIGAKTAAFIPVQEMSINRVDNPEEVLQPNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|332828388|gb|EGK01097.1| hypothetical protein HMPREF9455_02619 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 601

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 158 QIDVKPIRDYDVFVGKTMEFKV----VKINHEFKNVVVSHKALIEAELEQQK--KDIISK 211

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV    +VVK  + + V +LD
Sbjct: 212 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVQHPEEVVKLDEKINVVILD 270

Query: 677 F-DDRGKIKLSMKVVDQNTG 695
           F DD+ +I L +K +  +  
Sbjct: 271 FDDDKKRIALGLKQLTPHPW 290



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG F       DGL+HIS LS  +++   S+V   
Sbjct: 375 DPWENIEEKYPVGSKHTAKVRNFTNFGVFAEIEEGVDGLIHISDLSWTKKIKHPSEVTSI 434

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 435 GADIEVQVLEIDKENRRLSLGHKQLEENPW 464



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +++   +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 288 HPWDALSAELKVGDKVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWAQHLRSAQDFMKV 347

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D D  K+ L +K +  +  + I
Sbjct: 348 GDEVEAVVLTLDRDERKMSLGIKQLKPDPWENI 380


>gi|225166329|ref|ZP_03728014.1| RNA binding S1 domain protein [Opitutaceae bacterium TAV2]
 gi|224799427|gb|EEG17971.1| RNA binding S1 domain protein [Opitutaceae bacterium TAV2]
          Length = 788

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+SQLS   V   S+VVK G  V   +++ D  R +I
Sbjct: 691 GIVTNVTAFGAFVDVGVHQDGLVHVSQLSDTFVKDASEVVKPGQKVRATVIEVDLARNRI 750

Query: 684 KLSMKVVDQ 692
            LS++   Q
Sbjct: 751 ALSLRTNPQ 759


>gi|270291222|ref|ZP_06197445.1| transcription accessory protein [Pediococcus acidilactici 7_4]
 gi|270280618|gb|EFA26453.1| transcription accessory protein [Pediococcus acidilactici 7_4]
          Length = 724

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+L    V   SDVV  GD V V +   D  R 
Sbjct: 653 LQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVESVDTKRS 712

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 713 RIQLTM 718


>gi|90962233|ref|YP_536149.1| transcription accessory protein [Lactobacillus salivarius UCC118]
 gi|301299872|ref|ZP_07206106.1| Tex-like protein N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821427|gb|ABE00066.1| Transcription accessory protein [Lactobacillus salivarius UCC118]
 gi|300852543|gb|EFK80193.1| Tex-like protein N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 723

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V+DFGAFV     +DGLVH+S+LS + V+   DVV  G  V V + D 
Sbjct: 648 KAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVTVWVEDV 707

Query: 678 D-DRGKIKLSM 687
           D +R +I+L+M
Sbjct: 708 DLNRKRIQLTM 718


>gi|312868311|ref|ZP_07728511.1| Tex-like protein N-terminal domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096056|gb|EFQ54300.1| Tex-like protein N-terminal domain protein [Streptococcus
           parasanguinis F0405]
          Length = 718

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            + +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   
Sbjct: 641 HIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDLVTVWVKKI 700

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R K+ LS+   +++
Sbjct: 701 DVEREKVNLSLVAPNES 717


>gi|303230962|ref|ZP_07317705.1| putative general stress protein 13 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514344|gb|EFL56343.1| putative general stress protein 13 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 133

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G V  +  FGAF+     + GLVHIS+++   V   +DV+K  D V VK+L  
Sbjct: 4   EVGSVLNGTVSGITKFGAFIDLGDKQTGLVHISEVAHGYVEDINDVLKVQDAVKVKVLSV 63

Query: 678 DDRGKIKLSMKVVDQNT 694
           D   KI LS++   +  
Sbjct: 64  DGS-KIGLSIRQTQEKP 79


>gi|299822051|ref|ZP_07053938.1| general stress protein 13 [Listeria grayi DSM 20601]
 gi|299816679|gb|EFI83916.1| general stress protein 13 [Listeria grayi DSM 20601]
          Length = 117

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               +V  +  G+V  +  +GAFV       GLVHIS+++   V    D ++    V V+
Sbjct: 1   MSEYKVGDVVTGKVTGIQAYGAFVALDEHTQGLVHISEITHGFVKDIHDFLELEQEVKVR 60

Query: 674 LLDFD-DRGKIKLSMKVVDQN 693
           +LD D +  KI LS++  ++N
Sbjct: 61  ILDIDSEANKISLSIRATEEN 81


>gi|223042970|ref|ZP_03613018.1| general stress protein 13 [Staphylococcus capitis SK14]
 gi|314933167|ref|ZP_07840532.1| general stress protein 13 [Staphylococcus caprae C87]
 gi|222443824|gb|EEE49921.1| general stress protein 13 [Staphylococcus capitis SK14]
 gi|313653317|gb|EFS17074.1| general stress protein 13 [Staphylococcus caprae C87]
          Length = 126

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSI 65

Query: 678 DDRGKIKLSMKVVD 691
           DD GK+ LS+K  D
Sbjct: 66  DDEGKLNLSLKDND 79


>gi|198276788|ref|ZP_03209319.1| hypothetical protein BACPLE_02991 [Bacteroides plebeius DSM 17135]
 gi|198270313|gb|EDY94583.1| hypothetical protein BACPLE_02991 [Bacteroides plebeius DSM 17135]
          Length = 594

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPREVVSLDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWETIEEKYPVGSKHVAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K ++ N  
Sbjct: 434 GADIDVVVLEIDKENRRLSLGHKQLEDNPW 463



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDALDPNLKVGDHVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  K+ L +K +  +  + I
Sbjct: 347 GDEVEAVILTLDREERKMSLGIKQLKADPWETI 379


>gi|172035135|ref|YP_001801636.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
 gi|171696589|gb|ACB49570.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
          Length = 359

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 207 RALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFGV 265

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 266 NDELKVMIIDLDAERGRISLSTKQLEPEAG 295



 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 56  DIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDDPDEVLQSNETREFFILTDENE 115

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 116 DGQLTLSIRRIE 127


>gi|306829611|ref|ZP_07462801.1| YhgF like protein [Streptococcus mitis ATCC 6249]
 gi|304428697|gb|EFM31787.1| YhgF like protein [Streptococcus mitis ATCC 6249]
          Length = 709

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   D+ 
Sbjct: 693 TEREKVNLSLLAPDET 708


>gi|2160696|gb|AAB58903.1| unknown [Chlamydia trachomatis]
          Length = 123

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                    P  + I  G V K+  FGAFV      +GL+H+S+LS +  AK  DV+  G
Sbjct: 22  PWDEIEAMFPVGSDI-SGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIG 80

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
           D V  K++  D D  K+ LS+K 
Sbjct: 81  DKVSAKVIKLDPDHKKVSLSIKE 103


>gi|24213960|ref|NP_711441.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45658291|ref|YP_002377.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194819|gb|AAN48459.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45601533|gb|AAS71014.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 560

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +         E   + +G V  +  FGAFV      +GL+H S+L+  ++  +  D++K+
Sbjct: 270 DPWVWAERSLEKEMVIRGTVTSLTKFGAFVELKEGLEGLIHTSELAWSKKPPQPKDILKK 329

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V   +LD D    ++ L +K +  N  
Sbjct: 330 GQEVEALVLDIDFKNRRLSLGLKQLQPNPW 359



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVK 629
            +++   E     ++ID        +  L+      +        PE+ +  + +G +  
Sbjct: 325 DILKKGQEVEALVLDID------FKNRRLSLGLKQLQPNPWDQLGPEIRRGNVLEGVITG 378

Query: 630 VMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +  +GAFV      +GL+HIS ++  E+VA  +  +K+GDTV   +LD + D  +I   +
Sbjct: 379 ITKYGAFVEVENGIEGLIHISDITWDEKVANPTSQLKKGDTVRYMILDVNLDAQRISCGL 438

Query: 688 KVVDQNT 694
           K + +N 
Sbjct: 439 KQLMENP 445



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +   V  I +G+V  + +FG FV      +GLVHIS++   +    +++ K  +
Sbjct: 445 PYEIFRNEHPVGTIVEGKVKSIKEFGIFVEVAPGIEGLVHISEVPNGKEVNLTELYKSDE 504

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            V   ++  D    KI LS+K  D+   + 
Sbjct: 505 IVKTAVIKVDVKNKKISLSIKDFDKALERE 534



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++D     + S      E   E   ++    +V    K  V K+  FG F        
Sbjct: 162 IELNDRTRSGVVSRKKLLDEVNEEKWDALLLKLKVGDKVKAIVSKIASFGVFCEV-DGVT 220

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GL+    +S ++ A      + G  V + +L+ D +  K+ L +K + ++  
Sbjct: 221 GLLRQRDISYKKYAPFKQYFQVGQEVELVILELDKENNKLALGLKQLYEDPW 272


>gi|145344629|ref|XP_001416831.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
           lucimarinus CCE9901]
 gi|144577057|gb|ABO95124.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
           lucimarinus CCE9901]
          Length = 352

 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 11/127 (8%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           + +  Q G  +++     +   SS    +     +    ++   V  + +  V  + DFG
Sbjct: 116 KMLEAQIGKLIDV----KLVDHSSKRIVVSERALLQERASEKLPVGDVKEVVVTSLSDFG 171

Query: 635 AFVHFCGAR------DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSM 687
           AFV  C  +      +GLVHIS++S  R++   D VK G   +VK+L+  D+ G+I  S+
Sbjct: 172 AFVEVCDGQGEASGLEGLVHISEISWNRISHPRDAVKVGQREFVKVLEVNDETGRINFSI 231

Query: 688 KVVDQNT 694
           K    + 
Sbjct: 232 KQTQADP 238


>gi|332295332|ref|YP_004437255.1| RNA binding S1 domain protein [Thermodesulfobium narugense DSM
           14796]
 gi|332178435|gb|AEE14124.1| RNA binding S1 domain protein [Thermodesulfobium narugense DSM
           14796]
          Length = 113

 Score = 78.4 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           + Y+G V+    FGAFV       GLVHIS++S + V     V+K+GD + VK+L   + 
Sbjct: 8   EFYEGVVIGTAKFGAFVELPSGEVGLVHISEVSDDYVKDVDTVIKKGDKIRVKVLSIKND 67

Query: 681 GKIKLSMKV 689
           GKI+LS+K 
Sbjct: 68  GKIELSIKQ 76


>gi|157738252|ref|YP_001490936.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
 gi|157700106|gb|ABV68266.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
          Length = 550

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 25/209 (11%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-- 566
             G   +++V+A  +A   + H+   +   LS    ++ +     + + +      +   
Sbjct: 241 NEGDEVSVVVLAYDKA---KQHLSLSIKAALSNPWKEIKDQLEVGDTITVTVSNFESYGA 297

Query: 567 ---IGMGGKVIRGIVEQTGAK--------VNIDDDGTVKIASSSLAEI-------EAARE 608
              +G   + +  I E +  K        + I D+  V++   ++ +            +
Sbjct: 298 FVDLGNDIEGLLHISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEK 357

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +  +V  + KG++  + DFGAFV+  G  DGL+H  + S E  AK   + K+GD
Sbjct: 358 PFTKFVNEHKVGDVIKGKIATLTDFGAFVNI-GDVDGLLHNEEASWESNAKCKSLFKKGD 416

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V V+++  D ++  I LS+K +  +  K
Sbjct: 417 EVEVRIIKIDKEKENISLSIKDISDSPAK 445



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID +      S        A+    +     ++  I KG V  + DFG F+      D
Sbjct: 423 IKIDKEKENISLSIKDISDSPAKRFQDAY----KLGDIVKGPVKDIKDFGIFIKLENNLD 478

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GL+        +    +D VK GD +   +++ D  + +++LS++ ++Q   + ++
Sbjct: 479 GLIRNEDFGPLK----ADEVKNGDEIEAVIINIDTKKNRVRLSVRRLEQQQEREVL 530



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               + ++ E  +   G + K+  +G FV   G  DGLV+ +++S +     ++   EGD
Sbjct: 186 KDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANYYNEGD 244

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            V V +L +D  +  + LS+K    N  K I
Sbjct: 245 EVSVVVLAYDKAKQHLSLSIKAALSNPWKEI 275


>gi|172058806|ref|YP_001815266.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171991327|gb|ACB62249.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 706

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V   ++G V  V+DFGAFV       GLVHIS+LS +RV    DV+  GD V V +   
Sbjct: 632 QVGMEFQGTVRNVLDFGAFVDIGVKESGLVHISKLSKKRVKHPLDVIAVGDIVTVWVTSV 691

Query: 678 D-DRGKIKLSM 687
           + +RG+I L+M
Sbjct: 692 EPERGRIGLTM 702


>gi|295133734|ref|YP_003584410.1| 30S ribosomal protein S1 [Zunongwangia profunda SM-A87]
 gi|294981749|gb|ADF52214.1| 30S ribosomal protein S1 [Zunongwangia profunda SM-A87]
          Length = 609

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 183 QIDVKPIRDYDAYVGKTMEFKV----VKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 236

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGL+HI+ LS  R+   +++V+    + V +LD
Sbjct: 237 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLIHITDLSWSRINHPNEIVELDQKLNVVILD 295

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
           FD+ + +I+L +K + ++  + +
Sbjct: 296 FDEAKTRIQLGLKQLHKHPWEAL 318



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVV 664
            +    ++ +  +V    KG+VV + D+GAF+      +GL+H+S++S    +    D V
Sbjct: 311 HKHPWEALDEELKVGDKVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFV 370

Query: 665 KEGDTVWVKL--LDFDDRGKIKLSMKVVDQNTGKPI 698
             GD V  ++  LD DDR K+ L +K +  +    I
Sbjct: 371 NVGDEVEAQILTLDRDDR-KMSLGIKQLTPDPWTDI 405



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGL++IS LS  +++   S+    
Sbjct: 400 DPWTDITSKYPVGSKHTGVVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCNV 459

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD + V +L+ D  G+ + L  K ++ N  
Sbjct: 460 GDKLDVVVLELDVEGRKLSLGHKQIEDNPW 489


>gi|270292646|ref|ZP_06198857.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
 gi|270278625|gb|EFA24471.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
          Length = 709

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   D+ 
Sbjct: 693 TEREKVNLSLLAPDET 708


>gi|293335373|ref|NP_001168912.1| hypothetical protein LOC100382718 [Zea mays]
 gi|223973667|gb|ACN31021.1| unknown [Zea mays]
          Length = 209

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
            Q G      GS+    G T+ IV V  G RE ++   ++  +       + ++   AT 
Sbjct: 1   MQTGPTTAASGSAYAEFGKTKVIVSV-FGPRESKK---AMMYSDVGRLNCNVSYTTFATP 56

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
              + GA ++    +  +  +A+   +        T+ + + + ES GS     +  +SL
Sbjct: 57  VRGQ-GADNK---EYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASL 112

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD--SGITAMQ 504
           AL DAG+ +   V  +++   +      I+ D + DE+        VA       IT + 
Sbjct: 113 ALADAGIMMYDLVTSVSVSCFRKN----IIIDPTSDEEAWQDGSLVVAFMPARKEITQL- 167

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHI 531
                G  S+  +  A++        +
Sbjct: 168 --TLTGEWSDGRITNAVELCMDACSKL 192



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 16/194 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+  A +G+T V+ +V   R  K      D   L  N    T+A      G   +E  
Sbjct: 9   ASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQGADNKE-- 66

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
                 ++ + ++ ++  +     K    V   V++      P ++S   AS AL  +G+
Sbjct: 67  ---YSSMLHKALEGAV--MLHTFPKTTVDVFALVLESGGSDLPIIISC--ASLALADAGI 119

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVV 200
                V    V       +++P  DE+    GSL +     +  +  + L   + S+  +
Sbjct: 120 MMYDLVTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMPARKEITQLTLTG-EWSDGRI 178

Query: 201 LDAIIFGHNECKPV 214
            +A+    + C  +
Sbjct: 179 TNAVELCMDACSKL 192


>gi|70726996|ref|YP_253910.1| hypothetical protein SH1995 [Staphylococcus haemolyticus JCSC1435]
 gi|68447720|dbj|BAE05304.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 126

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+
Sbjct: 12  KVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKL 71

Query: 684 KLSMKVVD 691
            LS+K  D
Sbjct: 72  NLSLKDND 79


>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 276

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 90/235 (38%), Gaps = 23/235 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R+   VR +  + GL  +  GS+    G T+ +     G RE E+  +  +  +      
Sbjct: 40  REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLC-CVYGPRETERKDE--TDMRCGRLTA 96

Query: 377 HYNFLPCATGEVSR--MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
              F P +  E      G+  R       +   ++ P +         + +   + E+ G
Sbjct: 97  DVRFAPFSCPERGSWIQGSQDR---DFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGG 153

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH--------L 486
           S     V  +S+AL DAG+ +   V G    L +DG  F+  +D +  E+          
Sbjct: 154 SVLAHAVTCASVALADAGIQMYDLVLG--CSLRQDGASFV--ADPTYAEESGRAGPGGPR 209

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           G +      + + I+ ++ D ++    E+ +   ++    G   +   + +VLS 
Sbjct: 210 GGLTVAFLPSLNQISGLRSDGEMA---EDTLRAGVRTCIEGCYKLYPVVRQVLSR 261



 Score = 44.5 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 83/218 (38%), Gaps = 29/218 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+ +  G +  Q+ G+     G T +L  V   R  +   +       LT + +   ++
Sbjct: 46  RPVFVRCG-LGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVRFAPFS 104

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPH 127
               P      +     +    S M+  S++P     +  +++ +V + V+    E+   
Sbjct: 105 ---CPERGSWIQGSQDRD---FSSMLLESLQPAVCLHRYPRSQIEVHLVVL----ENGGS 154

Query: 128 VV--SMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ---------GSLDL 176
           V+  ++  AS AL  +G+     V+G  +      +V +P   E+          G L +
Sbjct: 155 VLAHAVTCASVALADAGIQMYDLVLGCSLRQDGASFVADPTYAEESGRAGPGGPRGGLTV 214

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPV 214
               + + +  +  +  +++ED +   +      C  +
Sbjct: 215 AFLPSLNQISGLRSDG-EMAEDTLRAGVRTCIEGCYKL 251


>gi|313884922|ref|ZP_07818674.1| Tex-like protein N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619613|gb|EFR31050.1| Tex-like protein N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 725

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTVKIASSSLAE 602
             LG       +  +    + +   +G + I+ I+E     K +I D     I    +  
Sbjct: 589 ADLGSEESVAGLDKLDAQTLADQYDIGLETIKDILEGLKNPKADIRDGQPAPILRDDVMT 648

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +E             E+    +G V  V+DFG FV     +DGLVHIS+LS + +   SD
Sbjct: 649 ME-----------DLEIGMQLQGVVRNVVDFGTFVDIGVKQDGLVHISRLSKKFIKHPSD 697

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
           VV  GD + V++++ D  + +I L  
Sbjct: 698 VVSVGDILEVEVVELDLQKQRIGLKR 723


>gi|298675857|ref|YP_003727607.1| translation initiation factor 2 subunit alpha [Methanohalobium
           evestigatum Z-7303]
 gi|298288845|gb|ADI74811.1| translation initiation factor 2, alpha subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 271

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M ++  + P V       V  V DFGA+V     G ++G +HIS++    V    D V+E
Sbjct: 2   MDKNNNEWPNVGDFVVCTVKNVTDFGAYVTLDEYGDKEGFIHISEIKAGWVKYVRDYVRE 61

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           G  +  K+L  D   + I LS+K V+++  + 
Sbjct: 62  GQKIVCKVLKVDPNRRHIDLSLKDVNEHQKRE 93


>gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 501

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           DD+ T +  ++     +      R + D+    ++  G+V     +G FV     RDGLV
Sbjct: 74  DDEATEEAGATFEPSGDEDGTTPRRLADLHAGMEL-DGKVTSTALYGVFVDIGVGRDGLV 132

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           HIS++S +R+   +DVV+ GD V V++   D D  +I L+M+
Sbjct: 133 HISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRISLTMR 174



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 25/152 (16%)

Query: 567 IGMGGKVIRGIVEQTGAKV----NIDDDGTVKIASSSLAEIEAAR----------EMIRS 612
           IG+G   +  I E +  ++    ++   G +        + +A R          E  R 
Sbjct: 124 IGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRR 183

Query: 613 ITDVPEVN----------KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
               PEVN           +  G V  +  FG FV     +DGLVHIS+LS  RV K  D
Sbjct: 184 APKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAED 243

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            V  G +   ++L+ D    +I LS++   ++
Sbjct: 244 AVTVGQSYTFRVLEVDTGAQRISLSLRRAKED 275



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           ++ A     E   A        DV     +  G+V  +  FGAFV     RDGLVHIS+L
Sbjct: 269 LRRAKEDFQERPKAPRRREVNLDVIAPGTVLDGKVSGIAPFGAFVDLGVGRDGLVHISEL 328

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S  RV K  DVVK GD V V++L+ D D  +I L+M+ V++    PI
Sbjct: 329 SEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTMR-VEEAPTTPI 374


>gi|224024480|ref|ZP_03642846.1| hypothetical protein BACCOPRO_01205 [Bacteroides coprophilus DSM
           18228]
 gi|224017702|gb|EEF75714.1| hypothetical protein BACCOPRO_01205 [Bacteroides coprophilus DSM
           18228]
          Length = 595

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPREVVQLDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWETIEEKYPVGSKHVAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDALDPNLKVGDHVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  K+ L +K +  +  + I
Sbjct: 347 GDEVEAVILTLDREERKMSLGIKQLKADPWETI 379


>gi|224477053|ref|YP_002634659.1| hypothetical protein Sca_1569 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421660|emb|CAL28474.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 716

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVH+SQLS   V    D+V  GD V V +L  D  + K+
Sbjct: 648 GTVRNVVDFGAFVDIGVKQDGLVHVSQLSKRFVKNPMDIVNVGDIVDVWVLSADAQKNKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 SLTM 711


>gi|308801265|ref|XP_003077946.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
           (ISS) [Ostreococcus tauri]
 gi|116056397|emb|CAL52686.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
           (ISS) [Ostreococcus tauri]
          Length = 345

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR------DGLVHISQLSTERVAKTSDV 663
                +     ++ +  V  + DFGAFV  C  +      +GLVHIS++S  R++   D 
Sbjct: 156 QEGAVEKLPAGEVKEVVVTSLSDFGAFVEVCDGQGAASGLEGLVHISEISWNRISHPRDA 215

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           VK G   +VK+L+ + + G+I  S+K    + 
Sbjct: 216 VKVGQREFVKVLEVNGETGRINFSIKQTQADP 247


>gi|3341558|emb|CAA13123.1| z11f [Vibrio cholerae]
          Length = 138

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV-----------PISKPVA 460
           ++   A     + +  ++ ++DG +  A++ G+S+AL DA             P+   VA
Sbjct: 1   MVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVA 60

Query: 461 GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVM 519
            +++G++ +     +L D+   ED     D  V  T+ G +  +Q   +    S   ++ 
Sbjct: 61  AVSVGILGED----VLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLE 116

Query: 520 ALQQAKRGRLHILNEMS 536
            L  AK+G   I+    
Sbjct: 117 LLAVAKKGIADIVAVQK 133


>gi|323463927|gb|ADX76080.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius
           ED99]
          Length = 716

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+L+ + +    D+V  GD V V + + D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGIKQDGLVHISKLAKKFIKHPMDIVSVGDIVEVWIENIDENKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 ALTM 711


>gi|319893018|ref|YP_004149893.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162714|gb|ADV06257.1| S1 RNA-binding domain-containing transcription accessory protein
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 716

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  V+DFGAFV     +DGLVHIS+L+ + +    D+V  GD V V + + D+ +GK+
Sbjct: 648 GTVRNVVDFGAFVDIGIKQDGLVHISKLAKKFIKHPMDIVSVGDIVEVWIENIDENKGKV 707

Query: 684 KLSM 687
            L+M
Sbjct: 708 ALTM 711


>gi|309774609|ref|ZP_07669634.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917640|gb|EFP63355.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 715

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +    +G V  V+DFGAFV      DGLVHIS++S  RV+  S++V  GD V V +   
Sbjct: 641 HIGDQLEGVVRNVVDFGAFVDIGLHEDGLVHISKMSRHRVSHPSELVSVGDIVKVWVYHI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K++LS+
Sbjct: 701 DEEKQKVQLSL 711


>gi|313893100|ref|ZP_07826677.1| Tex-like protein N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442453|gb|EFR60868.1| Tex-like protein N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 759

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  GD +  +++  
Sbjct: 646 QVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAVGDIIEAQIISV 704

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I LS+K +     K
Sbjct: 705 DVKRNRIGLSVKALQPEKPK 724


>gi|282849969|ref|ZP_06259352.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745]
 gi|282580406|gb|EFB85806.1| S1 RNA binding domain protein [Veillonella parvula ATCC 17745]
          Length = 766

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 27/159 (16%)

Query: 564 RNVIGMGGKVIRGIVEQTGAK--------VNIDD-----DGTVKIASSSLAEIEAAREMI 610
             +IG  G  ++ + +++  +        V+ D      D  V      LA +       
Sbjct: 563 ERIIGELGFTLKDLQDKSQLEALQVKLPLVDADKMAAKLDAGVPTVRDILAALAKPGRDP 622

Query: 611 RSITDVP------------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           R     P            +V  + KG V  V+DFGAFV F    +GL+H S+L   R  
Sbjct: 623 REDLPAPLTRKHVVSLEDIKVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-Q 681

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             SDV+  GD +  +++  D  R +I LS+K +     K
Sbjct: 682 HPSDVLAVGDIIEAQIISVDVKRNRIGLSVKALQPEKSK 720


>gi|167464772|ref|ZP_02329861.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 80

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR    +R +       +   GS L   GDT+ I   T+    +E+    L    +
Sbjct: 1   MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATI----EERVPPFLKNEGK 56

Query: 372 NDFMMHYNFLPCATGEVSRMGAPS 395
                 Y+ LP AT   ++  A  
Sbjct: 57  GWVTAEYSMLPRATQVRNQREASK 80


>gi|126659306|ref|ZP_01730442.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
 gi|126619388|gb|EAZ90121.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
          Length = 365

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 213 RALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFGV 271

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 272 NDELKVMIIDLDAERGRISLSTKQLEPEAG 301



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 62  DIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDDPDEVLQSNETREFFILTDENE 121

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 122 DGQLTLSIRRIE 133


>gi|322386962|ref|ZP_08060586.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
 gi|321269244|gb|EFX52180.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
          Length = 120

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +    D++K GD V V+++D
Sbjct: 1   MKIGDKLKGKITGIQPYGAFVELESGLIGLIHISEIRTGYIDNIHDILKIGDQVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKASLSMRTLEEE 78


>gi|189461460|ref|ZP_03010245.1| hypothetical protein BACCOP_02116 [Bacteroides coprocola DSM 17136]
 gi|189431989|gb|EDV00974.1| hypothetical protein BACCOP_02116 [Bacteroides coprocola DSM 17136]
          Length = 594

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV     + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPREVVSLDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   V   +  +V    +FG FV      DGL+HIS LS  +++   S+  + 
Sbjct: 374 DPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V++D    V I      +   A            S+    +V    KG+
Sbjct: 247 -WGRVSDPREVVSLDQKLNVVILDFDDEKKRIALGLKQLTPHPWDSLDPNLKVGDHVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD +   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEIEAVILTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLKADPWETI 379


>gi|288931264|ref|YP_003435324.1| translation initiation factor 2, subunit alpha [Ferroglobus
           placidus DSM 10642]
 gi|288893512|gb|ADC65049.1| translation initiation factor 2, alpha subunit [Ferroglobus
           placidus DSM 10642]
          Length = 265

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   +I  G V +V+DFGAFV       ++G+VHIS++++  V    D VK+G  V  K+
Sbjct: 13  PSKGEIVIGTVTRVLDFGAFVSLDEYENKEGMVHISEVASGWVKDIRDYVKKGQKVVCKV 72

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKP 697
           L+ D  RG I LS+K V +   K 
Sbjct: 73  LNVDRKRGHIDLSIKDVTERQRKE 96


>gi|257452603|ref|ZP_05617902.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|257466460|ref|ZP_05630771.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917617|ref|ZP_07913857.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059143|ref|ZP_07923628.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|313684819|gb|EFS21654.1| transcription accessory protein [Fusobacterium sp. 3_1_5R]
 gi|313691492|gb|EFS28327.1| transcription accessory protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 723

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+ FGAFV      D L+HIS +S E V+  S V+  G  + V++ + D +RG
Sbjct: 654 LEGTVRNVVKFGAFVDIGLKNDALLHISAISDEFVSDPSKVLSVGQIIKVRIKEIDKERG 713

Query: 682 KIKLSMK 688
           ++ L+ K
Sbjct: 714 RVGLTRK 720


>gi|226314534|ref|YP_002774430.1| hypothetical protein BBR47_49490 [Brevibacillus brevis NBRC 100599]
 gi|226097484|dbj|BAH45926.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 137

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 39/78 (50%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  I +G+V  +  FG FV       GLVHISQ++   V   +D    G  V VK+L 
Sbjct: 3   VQVGSIIEGKVTAIKPFGMFVAVSETEQGLVHISQVANGFVKDINDHFTVGAPVKVKVLS 62

Query: 677 FDDRGKIKLSMKVVDQNT 694
            DD GKI LS++      
Sbjct: 63  IDDAGKISLSVRAALPAP 80


>gi|260062463|ref|YP_003195543.1| 30S ribosomal protein S1 [Robiginitalea biformata HTCC2501]
 gi|88784028|gb|EAR15198.1| putative 30S ribosomal protein S1 [Robiginitalea biformata
           HTCC2501]
          Length = 615

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 186 QIDVKPIRDYDQYVGKTMEFKV----VKINQEFKNVVVSHKALIEADIE--EQKKEIISQ 239

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGLVHI+ LS  R+   ++VV     + V +LD
Sbjct: 240 LEKGQVLEGVVKNITSYGVFIDL-GGVDGLVHITDLSWSRINHPNEVVDLDQKLNVVILD 298

Query: 677 FDDRG-KIKLSMKVVDQNTG 695
           FDD   +I+L +K ++++  
Sbjct: 299 FDDNKSRIQLGIKQLEKHPW 318



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   +KG V    +FG FV      DGL++IS LS  +++   S+ V  
Sbjct: 403 DPWTDITSKYPVGSRHKGIVRNYTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFVSV 462

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD + V++L+ D  G+ + L  K   +N  
Sbjct: 463 GDEMEVEVLELDVDGRKLSLGHKQTQENPW 492



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ D  ++    KG+VV + D+GAF+      +GL+H+S++S    +    D V 
Sbjct: 315 KHPWDALGDEIKIGDKVKGKVVVIADYGAFLEVAEGVEGLIHVSEMSWSTHLRSAQDFVN 374

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD +   +L  D +  K+ L +K +  +    I
Sbjct: 375 VGDELEAVVLTLDREDRKMSLGLKQLTPDPWTDI 408


>gi|315302310|ref|ZP_07873200.1| protein YhgF [Listeria ivanovii FSL F6-596]
 gi|313629320|gb|EFR97563.1| protein YhgF [Listeria ivanovii FSL F6-596]
          Length = 725

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    D+V  
Sbjct: 637 KQDVISMDDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDIVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK 688
           GD V V + + D  + +I L+M+
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTMR 718


>gi|238018731|ref|ZP_04599157.1| hypothetical protein VEIDISOL_00575 [Veillonella dispar ATCC 17748]
 gi|237865202|gb|EEP66492.1| hypothetical protein VEIDISOL_00575 [Veillonella dispar ATCC 17748]
          Length = 774

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + KG V  V+DFGAFV F    +GL+H S+L   R    SDV+  GD +  +++  
Sbjct: 646 KVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-QHPSDVLAVGDIIEAQIISV 704

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           D  R +I LS+K +     K
Sbjct: 705 DVKRNRIGLSVKALQPEKPK 724


>gi|210620714|ref|ZP_03292200.1| hypothetical protein CLOHIR_00143 [Clostridium hiranonis DSM 13275]
 gi|210155215|gb|EEA86221.1| hypothetical protein CLOHIR_00143 [Clostridium hiranonis DSM 13275]
          Length = 423

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +    +I     AE    +    ++ D  EV +  +G+V K+M +GAFV   G  +GLVH
Sbjct: 201 EAERARIREEKAAERARVKAEKEAMFDALEVGQKKEGKVTKIMQYGAFVDI-GGIEGLVH 259

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            + LS +RV    D V EG  V V +L+ D +  K  L++K ++ +  K
Sbjct: 260 RNNLSWDRVENVEDFVTEGQEVEVYVLNIDQENRKFGLALKDINNDPWK 308



 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +  ++   V  I   +V+++++ GAFV    + +  + IS+LS +RV K  +VV EG
Sbjct: 305 DPWKIASEEISVGDIINVEVLRIIESGAFVKVRESVEAYLPISELSEDRVLKVQNVVNEG 364

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D + VK+++F     ++K+S    ++   + I
Sbjct: 365 DEIKVKVIEFSYKNRRMKVSKVEAEREPEEDI 396


>gi|152992317|ref|YP_001358038.1| transcription accessory protein [Sulfurovum sp. NBC37-1]
 gi|151424178|dbj|BAF71681.1| transcription accessory protein [Sulfurovum sp. NBC37-1]
          Length = 698

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-D 679
           I  G V  + DFGAFV      DG++HISQ+S +R+    +V+     +  V+++  D +
Sbjct: 628 IVSGVVRNIADFGAFVDIGLKNDGMIHISQMSQKRIKHPLEVLSVNQYLPRVEVISIDLE 687

Query: 680 RGKIKLSMKVV 690
           + K+ LS+K V
Sbjct: 688 KNKVGLSLKDV 698


>gi|327438483|dbj|BAK14848.1| transcriptional accessory protein [Solibacillus silvestris StLB046]
          Length = 723

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D           A  +   +      D  +V    +G V  V+DFGAFV     +DG
Sbjct: 612 DIVDTLMKPTRDPRDAFPQPLLKTDVLQMDDLQVGMELQGTVRNVVDFGAFVDIGVKQDG 671

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LVHIS+L   RV    DVV  GD V V +   + ++G+I L+M
Sbjct: 672 LVHISKLQKGRVKHPLDVVSLGDIVTVWVEKVEANKGRISLTM 714


>gi|224543167|ref|ZP_03683706.1| hypothetical protein CATMIT_02367 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523954|gb|EEF93059.1| hypothetical protein CATMIT_02367 [Catenibacterium mitsuokai DSM
           15897]
          Length = 716

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D     +                   +   V+   +G V  V+DFGAFV      DG
Sbjct: 609 DILDSIMRPLRDYRDDYDGPILRQDILTLEDLHVHDKLEGTVRNVVDFGAFVDIGLHEDG 668

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           LVHIS++S  R+   SDVV  GD V   +   D+ R K++L+M
Sbjct: 669 LVHISKMSKNRIKHPSDVVSVGDIVTTWVDTIDEQRHKVQLTM 711


>gi|67923044|ref|ZP_00516537.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
 gi|67855123|gb|EAM50389.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
          Length = 345

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFGV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 243 NDELKVMIIDLDAERGRISLSTKQLEPEAG 272



 Score = 38.4 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDDPDEVLQANETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|86607005|ref|YP_475768.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
 gi|86555547|gb|ABD00505.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
          Length = 323

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E V     V    D V V ++D D +RG+I LS
Sbjct: 204 RGIKPYGAFIDI-GGVSGLLHISEISHEHVDTPHSVFNVNDEVKVMIIDLDAERGRISLS 262

Query: 687 MKVVDQNTG 695
            K ++ N G
Sbjct: 263 TKQLEPNPG 271



 Score = 41.8 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
           +I  G V  V   GA +         + + ++S  R+    +V++ G+T    +L + ++
Sbjct: 32  EIVAGTVFSVEPGGALIDIGAKTAAFLPLQEMSISRIEDPHEVLQPGETREFFILTEENE 91

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 92  EGQLTLSIRRIE 103


>gi|284928895|ref|YP_003421417.1| 30S ribosomal protein S1P [cyanobacterium UCYN-A]
 gi|284809354|gb|ADB95059.1| SSU ribosomal protein S1P [cyanobacterium UCYN-A]
          Length = 346

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++    +  EV ++  G V  +  +GAF+   G   GL+HIS++S + +     V   
Sbjct: 184 RALVERKMNGLEVGQVVIGSVRGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFGV 242

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D + V ++D D +RG+I LS K ++   G
Sbjct: 243 NDELKVMIIDLDAERGRISLSTKQLEPEPG 272



 Score = 38.4 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  RV    +V++  +T    +L D ++
Sbjct: 33  DIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDNPDEVLQPNETREFFILTDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|217965005|ref|YP_002350683.1| hypothetical protein LMHCC_1728 [Listeria monocytogenes HCC23]
 gi|217334275|gb|ACK40069.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
 gi|307570435|emb|CAR83614.1| toxin expression-transcriptional accessory protein [Listeria
           monocytogenes L99]
          Length = 725

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDIVTVWVDEVDTKKNRIALTM 717


>gi|126651478|ref|ZP_01723682.1| hypothetical protein BB14905_07339 [Bacillus sp. B14905]
 gi|126591731|gb|EAZ85827.1| hypothetical protein BB14905_07339 [Bacillus sp. B14905]
          Length = 723

 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 29/192 (15%)

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           I+  +      GI      +A          IL E        + +LG       I A+ 
Sbjct: 548 ISEAKNPFDSTGIHPESYHLAE--------QILGEAKID----KKELGTKKAEEAIAALD 595

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             Q+  V+ +G   I+ IV           D  +K +            ++++     E 
Sbjct: 596 IQQLSGVLEIGVVTIQDIV-----------DTLMKPSRDPRDAFPQ--PLLKTDVLKMED 642

Query: 620 NKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            K+    +G V  V+DFGAFV     +DGLVHIS+L  +R+    +VV  GD V V +  
Sbjct: 643 LKVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLQNKRIKHPLEVVALGDIVTVWVEQ 702

Query: 677 FD-DRGKIKLSM 687
            D  +G+I L+M
Sbjct: 703 IDVSKGRISLTM 714


>gi|116493258|ref|YP_804993.1| transcriptional accessory protein [Pediococcus pentosaceus ATCC
           25745]
 gi|116103408|gb|ABJ68551.1| Transcriptional accessory protein [Pediococcus pentosaceus ATCC
           25745]
          Length = 722

 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS+L    V + SDVV  GD V V +   D +R 
Sbjct: 653 LQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQPSDVVAVGDIVKVWVESVDVERH 712

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 713 RIQLTM 718


>gi|154248867|ref|YP_001409692.1| RNA-binding S1 domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152803|gb|ABS60035.1| RNA binding S1 domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 119

 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            EV ++ KG+V +V+ FGA +       G +HIS++S + V K  D +K G  +  K++ 
Sbjct: 1   MEVGQVVKGKVTEVLKFGANIELENGEKGFIHISKISNQYVQKVEDFLKVGQDIEAKVIG 60

Query: 677 FDDRGKIKLSMKVVDQN 693
               GK +LS+K   Q 
Sbjct: 61  KGRDGKWELSLKEETQE 77


>gi|303277493|ref|XP_003058040.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460697|gb|EEH57991.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 698

 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            PEV  IY+G+V  VMDFG FV         +GLVH+S +S+ +     + V +   VWV
Sbjct: 194 EPEVGAIYRGRVTNVMDFGCFVELTEFERRFEGLVHVSLMSSLKQINAREQVSKDQRVWV 253

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K+       ++ LSM+ V+Q+TG  ++
Sbjct: 254 KVTTR-SSTRMALSMRDVNQDTGDDLM 279


>gi|86609793|ref|YP_478555.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558335|gb|ABD03292.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 322

 Score = 78.0 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S + V     V    D V V ++D D +RG+I LS
Sbjct: 203 RGIKPYGAFIDI-GGVSGLLHISEISHDHVDTPHSVFNVNDEVKVMIIDLDAERGRISLS 261

Query: 687 MKVVDQNTG 695
            K ++ N G
Sbjct: 262 TKQLEPNPG 270


>gi|261749410|ref|YP_003257095.1| 30S ribosomal protein S1 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497502|gb|ACX83952.1| 30S ribosomal protein S1 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 606

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 11/184 (5%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           +   +  A ++ +    ++       L      +  F P   I   P       +G    
Sbjct: 134 NWERINEAHEKGEVILGYVAARTKGGLIIEIFDIECFLPGSHINVKPVRDYDTYVGKT-- 191

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
                +E    K+N      V      +       E  + +    +  ++ +G++  ++ 
Sbjct: 192 -----MEVKVVKINQKTKNVVVSHKILIERDIE--EQRKEMISKLDKGQVLEGKIKNILP 244

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV   G  D L+HI+ +S   +   ++VV+    +   +L  D D+ +++L +K + 
Sbjct: 245 YGAFVDL-GGVDALLHITDMSWPHINHPTEVVQLEQELKFVVLGVDKDKNRVQLGLKQLQ 303

Query: 692 QNTG 695
            +  
Sbjct: 304 PHPW 307



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
               S+ +  +V    KG+V  + D+GAFV      + L+HIS++S    ++ T D V+ 
Sbjct: 305 HPWNSLDNNLKVGNKVKGKVSVLADYGAFVEIIPGVEALLHISEMSWSYDLSSTQDFVQI 364

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           GD +   +L  D + + + LS+K +  +    I
Sbjct: 365 GDEIEAVILTIDRQERKMSLSVKQLTPDPWIDI 397



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I ++  A +   D    K++ S         +    I +   +   + G V K  +FG 
Sbjct: 363 QIGDEIEAVILTIDRQERKMSLSVKQLTP---DPWIDIQNKYPIGSKHVGIVRKFTNFGI 419

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
            +       G+++ + LS  +++   S+     D + V +L  D +  ++ L  K + +N
Sbjct: 420 SLELEKGISGIIYANDLSWGKKIKHPSEFCNINDKLEVIILALDPQTRRLNLGHKQITEN 479

Query: 694 TGK 696
             +
Sbjct: 480 PWE 482



 Score = 43.7 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              E +   ++        +  +IY+G +  + +    V      +G + IS+       
Sbjct: 44  QQEERKKFEKIYAETLPKIQELEIYQGTITHITEKNLIVDIGFKAEGAIPISEFRENFN- 102

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                 K G+ + V ++  D +G+  LS
Sbjct: 103 -----FKVGEKMEVMVVKMDYKGQCILS 125


>gi|118475172|ref|YP_892406.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40]
 gi|118414398|gb|ABK82818.1| 30S ribosomal protein S1 [Campylobacter fetus subsp. fetus 82-40]
          Length = 557

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     +   +   I KG V  + +FGAFV   GA +GL+H    S +R  K  D++K G
Sbjct: 364 KPFDEFSSKFKEGDIVKGVVTTLTNFGAFVRV-GALEGLLHNEDSSWDRNDKCKDILKTG 422

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           D + VK++  DD+  KI LS K +  + 
Sbjct: 423 DEIDVKIIKIDDKNQKISLSQKDLKDSP 450



 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           KV+ +D   +      L E    R+   +I ++ +   I +G + K+  +G FV   G  
Sbjct: 170 KVDKNDQSIIVSRKKLLDEDR--RKRKEAIANIIDNTDIIEGTIKKITTYGMFVDV-GGI 226

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           DGLVH S++S +     + + KEGD V VK++ +D+  K + LS+K    +    I
Sbjct: 227 DGLVHYSEISYKGPVNPNTLYKEGDKVDVKIIKYDNDKKHLSLSIKAATPDPWDEI 282



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+ ++++  G ++   I       + IDD       S    +       +     V  V 
Sbjct: 413 DKCKDILKTGDEIDVKI-------IKIDDKNQKISLSQKDLKDS----PVTQYAKVHSVG 461

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I  G V  + DFG FV   G  D L+    + +         +K GD +   +   D++
Sbjct: 462 DIVTGTVRDIKDFGIFVSLEGNVDALIRKEDIGSLDPLT----LKAGDKIEAAIAFIDEK 517

Query: 681 G-KIKLSMKVVDQNTGKPIV 699
             +I+LS+K + +   + ++
Sbjct: 518 KNRIRLSVKRLARQKEREVL 537


>gi|332828138|gb|EGK00854.1| hypothetical protein HMPREF9455_02819 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 707

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                ++      IR+I D+ E   I  G V  + +FG FV      +GLVHIS+++   
Sbjct: 615 PRKGIKMFEFDPNIRTIDDLREG-MILPGIVTNITNFGCFVDVGIKENGLVHISEIADRF 673

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+  ++VV     V VK+L  D  R +++LSMK
Sbjct: 674 VSDPTEVVSLHQHVEVKVLSVDTARKRVQLSMK 706


>gi|87160497|ref|YP_493558.1| hypothetical protein SAUSA300_0858 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194649|ref|YP_499445.1| hypothetical protein SAOUHSC_00892 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253731562|ref|ZP_04865727.1| RNA binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|87126471|gb|ABD20985.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202207|gb|ABD30017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|253724805|gb|EES93534.1| RNA binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320141228|gb|EFW33075.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143000|gb|EFW34791.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 114

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
            +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  DD GK+ 
Sbjct: 1   MRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLN 60

Query: 685 LSMKVVD 691
           LS+K  D
Sbjct: 61  LSLKDND 67


>gi|34558836|gb|AAQ75180.1| 30S ribosomal protein S1 [Alvinella pompejana epibiont 7G3]
          Length = 556

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I ++   +V   D    K+  S    +    E+  S      V  I KG++  + DFGA
Sbjct: 331 NIGDKLDVEVIEIDKSKRKLRVSRKTLLPKPIEIFASKYR---VGDIVKGKISSITDFGA 387

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           FV      +GL+H  ++S ++ A   + +K+GD V  K++  D + GKI LS K ++++ 
Sbjct: 388 FVKIDD-IEGLIHNQEVSWDKSATAKNSLKKGDEVEAKIIKIDIENGKISLSKKALEESP 446



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 4/157 (2%)

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE 602
           R   G F   V  +     +  + I      I   V+    KV+ D    +      +  
Sbjct: 125 RKNRGGFVVDVSGLEFFMPKTLSYISPKINPIGKRVKALIVKVDKDKQSVIVSRKDLIE- 183

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
               +E+   +  +     +  G V K+  +G FV   G  DGLVH S++S +     + 
Sbjct: 184 -REKKEIQEIVDKLLTDKAVVLGTVKKITSYGMFVDV-GGLDGLVHYSKISHKGPVNPAK 241

Query: 663 VVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
             KEGD V V  +DFD + K + LS+K    +  + I
Sbjct: 242 HFKEGDEVNVVAIDFDKKKKHLSLSIKDATPDPWEDI 278



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D   K    SL+  +A  +    I            +V  +  +GAFV      +  +H+
Sbjct: 255 DFDKKKKHLSLSIKDATPDPWEDIDKSLRRGDSVSVEVSNIEPYGAFVDLGNDLEAFLHV 314

Query: 650 SQLSTER-VAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           S++S ++ V    D +  GD + V++++ D  + K+++S K +    
Sbjct: 315 SEISWDKNVKHPKDYLNIGDKLDVEVIEIDKSKRKLRVSRKTLLPKP 361



 Score = 44.1 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE    K++I++ G + ++  +L E   ++              + +G V    DFG FV
Sbjct: 421 VEAKIIKIDIEN-GKISLSKKALEESPISKFAKNHRV-----GDVVEGSVKDKKDFGIFV 474

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
                 D L+ +  L   +     D +++GD+V   +   D + GKI++S + + +   +
Sbjct: 475 SLDKGVDALLRLEDLGAIKF----DELQKGDSVRGIITYLDPKNGKIRISARRLQKQEER 530

Query: 697 P 697
            
Sbjct: 531 E 531


>gi|69245265|ref|ZP_00603343.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257880140|ref|ZP_05659793.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257882372|ref|ZP_05662025.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257885569|ref|ZP_05665222.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257891231|ref|ZP_05670884.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257894043|ref|ZP_05673696.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|258614524|ref|ZP_05712294.1| general stress protein 13, putative [Enterococcus faecium DO]
 gi|260560251|ref|ZP_05832427.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|261208188|ref|ZP_05922861.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289567552|ref|ZP_06447892.1| hypothetical protein EDAG_02490 [Enterococcus faecium D344SRF]
 gi|293552945|ref|ZP_06673600.1| general stress protein 13 [Enterococcus faecium E1039]
 gi|293560655|ref|ZP_06677142.1| general stress protein 13 [Enterococcus faecium E1162]
 gi|293570152|ref|ZP_06681230.1| general stress protein 13 (GSP13) [Enterococcus faecium E1071]
 gi|294615841|ref|ZP_06695684.1| general stress protein 13 [Enterococcus faecium E1636]
 gi|294618579|ref|ZP_06698135.1| general stress protein 13 [Enterococcus faecium E1679]
 gi|294621147|ref|ZP_06700334.1| general stress protein 13 [Enterococcus faecium U0317]
 gi|314939275|ref|ZP_07846523.1| putative general stress protein 13 [Enterococcus faecium TX0133a04]
 gi|314943678|ref|ZP_07850429.1| putative general stress protein 13 [Enterococcus faecium TX0133C]
 gi|314947597|ref|ZP_07851006.1| putative general stress protein 13 [Enterococcus faecium TX0082]
 gi|314953665|ref|ZP_07856553.1| putative general stress protein 13 [Enterococcus faecium TX0133A]
 gi|314994229|ref|ZP_07859533.1| putative general stress protein 13 [Enterococcus faecium TX0133B]
 gi|314998124|ref|ZP_07863009.1| putative general stress protein 13 [Enterococcus faecium TX0133a01]
 gi|68195940|gb|EAN10374.1| RNA binding S1 [Enterococcus faecium DO]
 gi|257814368|gb|EEV43126.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
 gi|257818030|gb|EEV45358.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
 gi|257821425|gb|EEV48555.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
 gi|257827591|gb|EEV54217.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
 gi|257830422|gb|EEV57029.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
 gi|260073596|gb|EEW61922.1| RNA binding protein S1 [Enterococcus faecium C68]
 gi|260077445|gb|EEW65163.1| RNA binding protein S1 [Enterococcus faecium TC 6]
 gi|289160652|gb|EFD08612.1| hypothetical protein EDAG_02490 [Enterococcus faecium D344SRF]
 gi|291587301|gb|EFF19187.1| general stress protein 13 (GSP13) [Enterococcus faecium E1071]
 gi|291591331|gb|EFF22997.1| general stress protein 13 [Enterococcus faecium E1636]
 gi|291595160|gb|EFF26497.1| general stress protein 13 [Enterococcus faecium E1679]
 gi|291599263|gb|EFF30293.1| general stress protein 13 [Enterococcus faecium U0317]
 gi|291602921|gb|EFF33118.1| general stress protein 13 [Enterococcus faecium E1039]
 gi|291605406|gb|EFF34853.1| general stress protein 13 [Enterococcus faecium E1162]
 gi|313587879|gb|EFR66724.1| putative general stress protein 13 [Enterococcus faecium TX0133a01]
 gi|313591353|gb|EFR70198.1| putative general stress protein 13 [Enterococcus faecium TX0133B]
 gi|313594335|gb|EFR73180.1| putative general stress protein 13 [Enterococcus faecium TX0133A]
 gi|313597644|gb|EFR76489.1| putative general stress protein 13 [Enterococcus faecium TX0133C]
 gi|313641428|gb|EFS06008.1| putative general stress protein 13 [Enterococcus faecium TX0133a04]
 gi|313645838|gb|EFS10418.1| putative general stress protein 13 [Enterococcus faecium TX0082]
          Length = 126

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++ +I +G+V  +  +GAFV       GL+H+S++ +        ++K G  V V++
Sbjct: 1   MTYKIGQIIEGKVTGIQPYGAFVSLDNETQGLIHVSEVQSGYTKNIHSLLKVGQPVTVQI 60

Query: 675 LDFDD-RGKIKLSMKVVDQN 693
           +D D+   KI LS++ +++ 
Sbjct: 61  IDIDEYSKKISLSLRTLEKT 80


>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
          Length = 219

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR +  +R +   + LL +  GS+ F  GD+  +  V  G R+       LS  + +
Sbjct: 5   RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAV-YGPRDV-----PLSREKHD 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +   +      E                L    ++ +          +R+V +   +
Sbjct: 59  RSTVEVAWHSAPDNEQG--------AALQSHLTEFVVNALASIHDFPRSAIRVVIQELNN 110

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           DG      +  + LALMDAG+ ++   A  +  +V    D  ++ D +  E +
Sbjct: 111 DGGMLACAINATCLALMDAGISLTAMFAAASCAVV----DGQLILDPTLIEQN 159



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 28  DGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+   ++G++ V+A V   R +   ++  D   + V +                 E   
Sbjct: 28  DGSASFSFGDSSVMAAVYGPRDVPLSREKHDRSTVEVAWHSAPDN-----------EQGA 76

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
                L   +++           ++  +V+I  + +D        ++ A   ALM +G+ 
Sbjct: 77  ALQSHLTEFVVNAL--ASIHDFPRSAIRVVIQELNNDGGMLAC--AINATCLALMDAGIS 132

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
                  A    ++GQ +L+P L E   +  + V+G
Sbjct: 133 LTAMFAAASCAVVDGQLILDPTLIEQNKANAVVVTG 168


>gi|329729305|gb|EGG65713.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 535

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  
Sbjct: 450 KSDVLSIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSV 508

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V +   D ++ K+ L+M
Sbjct: 509 GDIVDVWIYSIDKNKDKVSLTM 530


>gi|223985661|ref|ZP_03635709.1| hypothetical protein HOLDEFILI_03015 [Holdemania filiformis DSM
           12042]
 gi|223962352|gb|EEF66816.1| hypothetical protein HOLDEFILI_03015 [Holdemania filiformis DSM
           12042]
          Length = 718

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVH+S++   R++  S+VV  GD + V +   D +R 
Sbjct: 648 LEGVVRNVVDFGAFVDIGLHEDGLVHVSKMVQGRISHPSEVVSIGDILKVWVYGIDAERH 707

Query: 682 KIKLSM 687
           +++L+M
Sbjct: 708 RVQLTM 713


>gi|242373122|ref|ZP_04818696.1| RNA binding protein [Staphylococcus epidermidis M23864:W1]
 gi|242349276|gb|EES40877.1| RNA binding protein [Staphylococcus epidermidis M23864:W1]
          Length = 126

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  
Sbjct: 6   KVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSI 65

Query: 678 DDRGKIKLSMKVVD 691
           D+ GK+ LS+K  D
Sbjct: 66  DEEGKLNLSLKDND 79


>gi|313898405|ref|ZP_07831942.1| Tex-like protein N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956787|gb|EFR38418.1| Tex-like protein N-terminal domain protein [Clostridium sp. HGF2]
          Length = 715

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +    +G V  V+DFGAFV      DGLVHIS++S  R+A  SD V  GD V V + + 
Sbjct: 641 HIGDQLEGVVRNVVDFGAFVDIGLHEDGLVHISKMSRHRIAHPSDKVSIGDIVKVWVYNI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K++LS+
Sbjct: 701 DEEKQKVQLSL 711


>gi|237743222|ref|ZP_04573703.1| transcription accessory protein [Fusobacterium sp. 7_1]
 gi|229433518|gb|EEO43730.1| transcription accessory protein [Fusobacterium sp. 7_1]
          Length = 722

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + VK+ D 
Sbjct: 648 QVGMELEGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKVKIKDV 707

Query: 678 D-DRGKIKLSMK 688
           D DRG++ L+ K
Sbjct: 708 DKDRGRVGLTRK 719


>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
 gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
          Length = 233

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 93/227 (40%), Gaps = 24/227 (10%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
             +  R++GR    +R + ++  LL +  GS+ F +  T  +  V  G  E       ++
Sbjct: 4   KQEFRRLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAV-YGPIE-------VN 55

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
             ++   +  Y  +         +G  +  +     L + A+  V+  T      + ++ 
Sbjct: 56  SARKEKILKSYVEVTF----TPALGNTTYLDKEKELLVKNAVESVILTTLHPRTQVSVII 111

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD-------FIILSDIS 480
           ++   DGS    ++  + LAL+DAG+ ++  +   ++ L+ + DD        I+  D++
Sbjct: 112 QVYSDDGSIVSCSINAACLALLDAGIEMNGLI--GSITLMNEDDDEDNNKCLMIVDPDLN 169

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            + +      F  +   + I   +    IG ++E+     L+ A+  
Sbjct: 170 EENNSKAMAIFAFSSNSNNIVMSK---TIGTLTEDQYFECLKAARGC 213



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 79/210 (37%), Gaps = 24/210 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG+   +  +T VLA V     +   +    L  +Y E T+        YL +E     
Sbjct: 31  ADGSAKFSQNKTSVLAAVYGPIEVNSARKEKILK-SYVEVTFTPALGNTTYLDKE----- 84

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFE 146
            E+L+   ++  I        + +  VII V   D        S+ AA  AL+ +G+   
Sbjct: 85  KELLVKNAVESVILTTLH--PRTQVSVIIQVYSDDGSIVSC--SINAACLALLDAGIEMN 140

Query: 147 GPVVGAQVDYINGQ-------YVLNPRLDEDQGS--LDLFVSGTQDAVLMVELEANQLSE 197
           G +    +   +          +++P L+E+  S  + +F   +    +++      L+E
Sbjct: 141 GLIGSITLMNEDDDEDNNKCLMIVDPDLNEENNSKAMAIFAFSSNSNNIVMSKTIGTLTE 200

Query: 198 DVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
           D   + +           ++I    K+  K
Sbjct: 201 DQYFECLKAARG-----CDSIIAYMKLAVK 225


>gi|294807103|ref|ZP_06765921.1| 30S ribosomal protein S1 [Bacteroides xylanisolvens SD CC 1b]
 gi|294445669|gb|EFG14318.1| 30S ribosomal protein S1 [Bacteroides xylanisolvens SD CC 1b]
          Length = 565

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D D  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKDNRRLSLGHKQLEENPW 463



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|227891239|ref|ZP_04009044.1| S1 domain RNA-binding protein [Lactobacillus salivarius ATCC 11741]
 gi|227867113|gb|EEJ74534.1| S1 domain RNA-binding protein [Lactobacillus salivarius ATCC 11741]
          Length = 723

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V+DFGAFV     +DGLVH+S+LS + V+   DVV  G  V V + D 
Sbjct: 648 KAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVTVWVEDV 707

Query: 678 D-DRGKIKLSM 687
           D +R +I+L+M
Sbjct: 708 DLNRRRIQLTM 718


>gi|260495299|ref|ZP_05815426.1| transcriptional accessory protein [Fusobacterium sp. 3_1_33]
 gi|260197077|gb|EEW94597.1| transcriptional accessory protein [Fusobacterium sp. 3_1_33]
          Length = 722

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + VK+ D 
Sbjct: 648 QVGMELEGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKVKIKDV 707

Query: 678 D-DRGKIKLSMK 688
           D DRG++ L+ K
Sbjct: 708 DKDRGRVGLTRK 719


>gi|241889533|ref|ZP_04776832.1| protein YhgF [Gemella haemolysans ATCC 10379]
 gi|241863840|gb|EER68223.1| protein YhgF [Gemella haemolysans ATCC 10379]
          Length = 722

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 17/134 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +    +   IG+G + +  I++     +                    A+ +++S     
Sbjct: 599 VDKKALAEKIGVGLETLEDIIKDLKQPL-------------RDERESFAKPLLKSDILTI 645

Query: 618 EVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  +I     G V  +  FGAF+     +D +VHIS++S   +    DV+  G  V V +
Sbjct: 646 DDLQIGVKLAGTVRNITQFGAFIDIGLKQDAMVHISKISKNYIKNPLDVLSVGQIVDVYV 705

Query: 675 LDFDD-RGKIKLSM 687
           +D D  RG++ L+M
Sbjct: 706 IDVDKQRGRVALAM 719


>gi|86142704|ref|ZP_01061143.1| 30S ribosomal protein S1 [Leeuwenhoekiella blandensis MED217]
 gi|85830736|gb|EAQ49194.1| 30S ribosomal protein S1 [Leeuwenhoekiella blandensis MED217]
          Length = 627

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V    + +       E  + I   
Sbjct: 198 QIDVKPIRDY----DAYVNKTMEFKVVKINQEFKNVVVSHKALIEADIE--EQKKEIIGQ 251

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   +++V     + V +LD
Sbjct: 252 LEKGQVLEGTVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEIVDLDQKLNVVILD 310

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD D+ +I+L +K + ++  
Sbjct: 311 FDEDKTRIQLGLKQLKKHPW 330



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 95/257 (36%), Gaps = 26/257 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIG 510
           I  G VK      ++ D+ G E  L      V              +  +  +  + K  
Sbjct: 170 IVTGFVKARTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDAYVNKTMEFKVVKINQEFKNV 229

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
            +S   ++ A  + ++  +    E  +VL  +   +  +      + +    +  ++ + 
Sbjct: 230 VVSHKALIEADIEEQKKEIIGQLEKGQVLEGTVKNITSY-----GVFVDLGGVDGLVHIT 284

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIY 623
                  +      V++D    V I      +           +    ++++   V    
Sbjct: 285 DLS-WSRINHPNEIVDLDQKLNVVILDFDEDKTRIQLGLKQLKKHPWDALSETLSVGDKV 343

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           KG+VV + D+GAFV      +GL+H+S++S    +    D V  GD V  ++L  D +  
Sbjct: 344 KGKVVVIADYGAFVEVEEGVEGLIHVSEMSWSTHLRSAQDFVNVGDEVEAQILTMDREDR 403

Query: 682 KIKLSMKVVDQNTGKPI 698
           K+ L +K + Q+    I
Sbjct: 404 KMSLGIKQLTQDPWTDI 420



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   + G V    +FG FV      DGL++IS LS  +++   S+   
Sbjct: 414 QDPWTDITSKYPVGSRHTGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFTN 473

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GD + V +L+ D  G+ + L  K ++ N  
Sbjct: 474 IGDKLEVVVLELDVEGRKLSLGHKQIEDNPW 504


>gi|256027631|ref|ZP_05441465.1| transcription accessory protein [Fusobacterium sp. D11]
 gi|289765589|ref|ZP_06524967.1| transcription accessory protein [Fusobacterium sp. D11]
 gi|289717144|gb|EFD81156.1| transcription accessory protein [Fusobacterium sp. D11]
          Length = 722

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + VK+ D 
Sbjct: 648 QVGMELEGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKVKIKDV 707

Query: 678 D-DRGKIKLSMK 688
           D DRG++ L+ K
Sbjct: 708 DKDRGRVGLTRK 719


>gi|227552383|ref|ZP_03982432.1| RNA binding protein [Enterococcus faecium TX1330]
 gi|257888376|ref|ZP_05668029.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257896733|ref|ZP_05676386.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257899812|ref|ZP_05679465.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|293378084|ref|ZP_06624260.1| putative general stress protein 13 [Enterococcus faecium PC4.1]
 gi|293571133|ref|ZP_06682171.1| general stress protein 13 [Enterococcus faecium E980]
 gi|227178471|gb|EEI59443.1| RNA binding protein [Enterococcus faecium TX1330]
 gi|257824430|gb|EEV51362.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
 gi|257833298|gb|EEV59719.1| RNA binding protein S1 [Enterococcus faecium Com12]
 gi|257837724|gb|EEV62798.1| RNA binding protein S1 [Enterococcus faecium Com15]
 gi|291608746|gb|EFF38030.1| general stress protein 13 [Enterococcus faecium E980]
 gi|292643339|gb|EFF61473.1| putative general stress protein 13 [Enterococcus faecium PC4.1]
          Length = 126

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++ +I +G+V  +  +GAFV       GL+H+S++ +        ++K G  V V++
Sbjct: 1   MTYKIGQIIEGKVTGIQPYGAFVSLDNETQGLIHVSEVQSGYTKNIHSLLKVGQPVTVQI 60

Query: 675 LDFDD-RGKIKLSMKVVDQN 693
           +D D+   KI LS++ +++ 
Sbjct: 61  IDIDEYSKKISLSLRTLEKT 80


>gi|115456549|ref|NP_001051875.1| Os03g0844900 [Oryza sativa Japonica Group]
 gi|41469634|gb|AAS07357.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
           sativa Japonica Group]
 gi|108712064|gb|ABF99859.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
           Japonica Group]
 gi|113550346|dbj|BAF13789.1| Os03g0844900 [Oryza sativa Japonica Group]
 gi|215712403|dbj|BAG94530.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 339

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGDTV
Sbjct: 176 LVKIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTV 235

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNT 694
            V +++ D ++ +I LS++ ++++ 
Sbjct: 236 KVIVVNIDMEKSRIALSIRQLEEDP 260


>gi|15902852|ref|NP_358402.1| toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae R6]
 gi|149002452|ref|ZP_01827386.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|15458408|gb|AAK99612.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae R6]
 gi|147759389|gb|EDK66381.1| Toxin expression - transcriptional accessory protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 715

 Score = 78.0 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 639 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 698

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 699 TEREKVNLSLLAPNET 714


>gi|237820844|ref|ZP_04596689.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 725

 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 649 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 708

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 709 TEREKVNLSLLAPNET 724


>gi|317503026|ref|ZP_07961108.1| YhgF like protein [Prevotella salivae DSM 15606]
 gi|315665863|gb|EFV05448.1| YhgF like protein [Prevotella salivae DSM 15606]
          Length = 707

 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAF+     +DGLVHISQL+ + +   +++VK  + V+V++++ D  R +I
Sbjct: 639 GIVTNITNFGAFIDIGVHQDGLVHISQLADKFIKDPNEIVKLHEHVFVRVIEIDHKRQRI 698

Query: 684 KLSMK 688
            LSM+
Sbjct: 699 ALSMR 703


>gi|227529467|ref|ZP_03959516.1| S1 domain RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350552|gb|EEJ40843.1| S1 domain RNA-binding protein [Lactobacillus vaginalis ATCC 49540]
          Length = 735

 Score = 78.0 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 21/200 (10%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           +   +    +   +     +  +  V  ++ L   +  P    +A   ++I     +   
Sbjct: 537 NRKQLKDVPRLGPKAYQQSVGFLRIVNGDNPLDNTDVHPESYPIA---EKIMETAEINVD 593

Query: 573 VI-RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--------REMIRSITDVPEVNKI- 622
            +     E+   K+++DD  T      ++ +I A+        R+ + +     +V KI 
Sbjct: 594 SLGSDAAEKQLKKIDVDDFTTENAGEETVKDIIASLQKPGRDLRDSMPAPLLRQDVMKID 653

Query: 623 -------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                   +G V  V+DFGAFV      DGLVH+S++S + +      V  GD V V + 
Sbjct: 654 DLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIKDPRSAVSVGDIVDVWID 713

Query: 676 DFD-DRGKIKLSMKVVDQNT 694
           D D  R +I+L+M    +  
Sbjct: 714 DVDLKRQRIQLTMIAPQEEA 733


>gi|298373340|ref|ZP_06983329.1| ribosomal protein S1 [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274392|gb|EFI15944.1| ribosomal protein S1 [Bacteroidetes oral taxon 274 str. F0058]
          Length = 606

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL--NEMS 536
           I   E      D KV          Q D K   +  + +     +A       L   E+ 
Sbjct: 83  IPYAEFRYN-PDLKVGDKVEVFIENQEDKKGQLLLSHKLAKH-ARAWEQVEAALESQEII 140

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
               + R + G       I A  P    +V  +    +          V ++++    + 
Sbjct: 141 HGYIKCRTKGGMIVEVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKIVKVNNEFKNVVV 200

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           S      E   E  + I    E  ++ +G V  V  +G F+   G  DGL+HI+ LS  R
Sbjct: 201 SHKALIEEELEEQRKEIISRLEKGQVLEGIVKNVTSYGVFIDL-GGVDGLIHITDLSWGR 259

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           V    ++VK  + + V +LDFD ++ +I L +K +  +  
Sbjct: 260 VNHPDEIVKLDEKINVVILDFDEEKKRIALGLKQLTPHPW 299



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQV 627
            G V      V +D+   V I      +   A            ++    +V    KG+V
Sbjct: 257 WGRVNHPDEIVKLDEKINVVILDFDEEKKRIALGLKQLTPHPWDALDQNLKVGDKVKGKV 316

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V + D+GAF+      +GL+H+S++S  + +   +D +K GD V   +L  D +  K+ L
Sbjct: 317 VVMADYGAFLEIIPGVEGLIHVSEMSWSQHLRSANDFLKVGDEVEAVILTLDREERKMSL 376

Query: 686 SMKVVDQNTGKPI 698
            MK +  +    I
Sbjct: 377 GMKQLKPDPWATI 389



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     V   +  +V    +FG F       DGL+HIS LS  +++   S+  + 
Sbjct: 384 DPWATIDTKYAVGTRHTAKVRNFTNFGVFAELEEGVDGLIHISDLSWTKKIKHPSEFTQL 443

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           G  + V +L+ D    ++ L  K +++N  
Sbjct: 444 GSEIEVVVLEIDKENSRLSLGHKQLEENPW 473


>gi|86131923|ref|ZP_01050520.1| 30S ribosomal protein S1 [Dokdonia donghaensis MED134]
 gi|85817745|gb|EAQ38919.1| 30S ribosomal protein S1 [Dokdonia donghaensis MED134]
          Length = 610

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  + I   
Sbjct: 182 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 235

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   +++V+    + V +LD
Sbjct: 236 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEIVELDQKLNVVILD 294

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD D+ +I+L +K + ++  + +
Sbjct: 295 FDEDKTRIQLGLKQLSKHPWEAL 317



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ D  +V    KG+VV + D+GAF+      +GL+H+S++S    +    D VK
Sbjct: 311 KHPWEALGDELKVGDNVKGKVVVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFVK 370

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V  ++L  D +  K+ L +K + Q+    I
Sbjct: 371 VGDVVDAQILTLDREDRKMSLGIKQLTQDPWTDI 404



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   ++G V    +FG F+      DGL++IS LS  ++V   S+  +
Sbjct: 398 QDPWTDITSKYPVGSRHEGIVRNFTNFGVFLELEEGIDGLIYISDLSWTKKVKHPSEFCE 457

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GD + V +L+ D  G+ + L  K ++ N  
Sbjct: 458 VGDKLEVVVLELDVDGRKLSLGHKQIEANPW 488


>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 251

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 88/244 (36%), Gaps = 47/244 (19%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR+   +R IS++ G L R  GSS    GDT  + V   G  + +   + L      
Sbjct: 6   RDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVL-VAVYGPGQAKIARNELVDKAAI 64

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
           D  +  N            G  + +E     + RR   P++ +       + IV +I E 
Sbjct: 65  DVCVRLN-----------QGIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQIIED 113

Query: 433 DGSSS-------------------------MATVCGSSLALMDAGVPISKPVAGIAMGLV 467
            GS S                          A +   ++ALMDA + +   V      L 
Sbjct: 114 AGSISSLLTSHTIGFGSCVEFLDRLCLYLVSAVINAVTMALMDAEIAMLGVVTSTTCCLT 173

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGT----DSGITAMQMDMKIGGISENIMVMALQQ 523
           +DG    +L D S  E+         A +    + G+  +  +   G +SE  +    + 
Sbjct: 174 EDGS---VLLDPSQKEEAECISLVICASSFQLAEGGVLFLSSE---GPLSEEQLFSCAEA 227

Query: 524 AKRG 527
            KRG
Sbjct: 228 CKRG 231



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 82/237 (34%), Gaps = 46/237 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R +  E G + R +DG+   T+G+T VL  V      K  ++             A   +
Sbjct: 16  RQISSEQGTLHR-ADGSSNLTFGDTTVLVAVYGPGQAKIARNELVDK--------AAIDV 66

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVM-----------QH 120
                +  +   E E+ +  ++ R   P+    +  +    ++I ++            H
Sbjct: 67  CVRLNQGIAAAKEKEMEL--IVRRLYEPIIQRQEFPRTVISIVIQIIEDAGSISSLLTSH 124

Query: 121 -----------DLESSPHVVS-MVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRL 167
                      D      V + + A + ALM + +   G V         +G  +L+P  
Sbjct: 125 TIGFGSCVEFLDRLCLYLVSAVINAVTMALMDAEIAMLGVVTSTTCCLTEDGSVLLDPSQ 184

Query: 168 DEDQGSLDLFVSGT-----QDAVLMVELEANQLSEDVV---LDAIIFGHNECKPVIE 216
            E+   + L +  +     +  VL +  E   LSE+ +    +A   G    +  I 
Sbjct: 185 KEEAECISLVICASSFQLAEGGVLFLSSEGP-LSEEQLFSCAEACKRGSKCVETFIR 240


>gi|323344269|ref|ZP_08084495.1| YhgF like protein [Prevotella oralis ATCC 33269]
 gi|323094998|gb|EFZ37573.1| YhgF like protein [Prevotella oralis ATCC 33269]
          Length = 709

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ-----VVKVMDFGAFVHFCGARDGLV 647
           +K       +  A  E+     +V  ++ +++G      V  +  FGAFV     +DGLV
Sbjct: 607 MKELEKPGRDPRAEIELFEFDPNVKTIDDLHEGMLLPGIVTNITKFGAFVDIGVHQDGLV 666

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           HISQL+ + V+  + VV   + V VK+L  D  R +I L+MK
Sbjct: 667 HISQLANKFVSDPATVVHLHEHVQVKVLAVDMQRRRISLTMK 708


>gi|297738788|emb|CBI28033.3| unnamed protein product [Vitis vinifera]
          Length = 917

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
               + +I  DG V  +    A    + EM     +       + G+V  +  FGAF+ F
Sbjct: 68  HPSEEPSIKSDGGVTSSQPKRARPRKS-EMPPVKNEELVPGATFTGKVKSIQPFGAFIDF 126

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
               DGLVH+S+LS   V    ++V  G  V V+L++ + + G+I L+M  V + +
Sbjct: 127 GAFTDGLVHVSRLSDSYVKDVGNIVSIGQEVKVRLVEANTETGRISLTMHEVKKTS 182


>gi|303285568|ref|XP_003062074.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456485|gb|EEH53786.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 844

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
               +AA E         +     +G V  +  FGAFV      +GLVH++++S +   K
Sbjct: 165 RKAKKAASEESMKAVRAIKKGTTVEGVVKSIQAFGAFVEIAEGVEGLVHVTEMSEDYNVK 224

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D V  G+TV V++L  D + K+KLSMK 
Sbjct: 225 PEDFVTVGETVKVRVLGVDGQ-KVKLSMKE 253



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +KG V +V ++G FV F    DGLVHIS+L    V   +DVV E   V V +   D ++G
Sbjct: 74  FKGVVKRVQEYGCFVDFGAKSDGLVHISELKDGFVENVADVVSENQEVQVFIKSIDAEKG 133

Query: 682 KIKLSMK 688
           +I L+MK
Sbjct: 134 RISLTMK 140


>gi|168014820|ref|XP_001759949.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688699|gb|EDQ75074.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 389

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  V  +GAF+   G   GL+HISQ+S +R+     V+  GD + V +L  D
Sbjct: 269 IGSVVVGTVQTVKPYGAFIDI-GGVSGLLHISQISHDRLTSVETVLSPGDKLKVMVLSQD 327

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG+I LS K ++   G
Sbjct: 328 KDRGRISLSTKKLEPTPG 345


>gi|322389951|ref|ZP_08063491.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           903]
 gi|321143387|gb|EFX38825.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           903]
          Length = 718

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            + +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   
Sbjct: 641 HIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSKQFIKHPSQVVSVGDLVTVWVKRI 700

Query: 678 D-DRGKIKLSMKVVDQN 693
           D +R K+ LS+   +++
Sbjct: 701 DVEREKVNLSLVAPNES 717


>gi|307708663|ref|ZP_07645126.1| toxin expression - transcriptional accessory protein [Streptococcus
           mitis NCTC 12261]
 gi|307615237|gb|EFN94447.1| toxin expression - transcriptional accessory protein [Streptococcus
           mitis NCTC 12261]
          Length = 709

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|332290893|ref|YP_004429502.1| RNA binding S1 domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168979|gb|AEE18234.1| RNA binding S1 domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 610

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  + I   
Sbjct: 182 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 235

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   +++V+    + V +LD
Sbjct: 236 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEIVELDQKLNVVILD 294

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD D+ +I+L +K + ++  + +
Sbjct: 295 FDEDKTRIQLGLKQLSKHPWEAL 317



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ +  +V    KG+VV + D+GAF+      +GL+H+S++S    +    D VK
Sbjct: 311 KHPWEALGEELKVGDNVKGKVVVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFVK 370

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V  ++L  D +  K+ L +K + Q+    I
Sbjct: 371 VGDVVDAQILTLDREDRKMSLGIKQLTQDPWTDI 404



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   ++G V    +FG F+      DGL++IS LS  ++V   S+  +
Sbjct: 398 QDPWTDITSKYPVGSRHEGIVRNFTNFGVFLELEEGIDGLIYISDLSWTKKVKHPSEFCE 457

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GD + V +L+ D  G+ + L  K ++ N  
Sbjct: 458 VGDKLEVVVLELDVDGRKLSLGHKQIEANPW 488


>gi|320582873|gb|EFW97090.1| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Pichia angusta DL-1]
          Length = 1659

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 590  DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLV 647
            +G  +I  +       +   +    D  + ++IY+G V +V +FG FV+  G     GL 
Sbjct: 1188 EGENQILMTLKQSEIDSDSSLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGTLNVSGLC 1247

Query: 648  HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            H SQ++  +V     +  EGD V VK+LD D ++ ++ L MK 
Sbjct: 1248 HHSQIADNQVTNIESLFSEGDRVKVKILDVDHEKKQLSLGMKA 1290



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E + S  +  E  K     + K++  G  V F G     +  S++S   V +  D VK G
Sbjct: 557 EDVVSSIEDVEAGKKTFATIDKMLPTGCVVRFFGFVKAFLPNSEISETFVKRPEDHVKLG 616

Query: 668 DTVWVKLLDFD-DRGKIKLSMKV 689
            TV V+++  D +  +IK+S +V
Sbjct: 617 QTVKVRVVSVDKENNRIKVSCRV 639



 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           +++  G V  V   G FV F     GL        + V           +V   ++  DD
Sbjct: 754 DELLHGFVKSVTPNGVFVSFGNGLTGLALPRHAVEKPVDDLQKAFFTNQSVTCHVIRVDD 813

Query: 680 RGKIKL-SMKVVDQNTGKP 697
             K  L SMK     T +P
Sbjct: 814 ANKRFLVSMKKESSTTSEP 832



 Score = 39.1 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +  +      + +G V  V + G +V        LV +S LS   +       K 
Sbjct: 1117 KDKRIASYEDLSPGTVVRGFVKNVANNGVYVALGRTVHALVRVSDLSDSYLKDWKQYFKV 1176

Query: 667  GDTVWVKLLDFDDRGKIKLSMKV 689
               V  K+   +   +I +++K 
Sbjct: 1177 HQPVLGKITKSEGENQILMTLKQ 1199


>gi|307706709|ref|ZP_07643514.1| protein tex [Streptococcus mitis SK321]
 gi|307617794|gb|EFN96956.1| protein tex [Streptococcus mitis SK321]
          Length = 709

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|257461293|ref|ZP_05626390.1| 30S ribosomal protein S1 [Campylobacter gracilis RM3268]
 gi|257441321|gb|EEV16467.1| 30S ribosomal protein S1 [Campylobacter gracilis RM3268]
          Length = 555

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV+ D+   V      L E   A +         E   I +G V K+  +G FV   G 
Sbjct: 164 IKVDRDEQSIVVSRKKLLDEDRKASKEAIEKVIATEG--IIEGVVKKITTYGMFVDV-GG 220

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            DGLVH S++S +     S + KEGD V VK++ +D+  K + LS+K    +    I
Sbjct: 221 VDGLVHYSEISYKGPVNPSSLYKEGDKVPVKVIKYDNDKKHLSLSIKEAMPDPWNEI 277



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 22/181 (12%)

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAK----- 584
           + + + +   ++ +     + + +    I        +G   +    I E +  K     
Sbjct: 266 IKEAMPDPWNEIKDSLEVGDTIRVKVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNP 325

Query: 585 ---VNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQVVKVMDFG 634
              ++  ++  V++   + +E            +         +V  + KG V  + +FG
Sbjct: 326 KDFISEGEELDVEVVEINPSERRLRVSLKNLLTKPFDEFVAKHKVGDVLKGSVTTITNFG 385

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV      +GL+H    S +R  K  ++ K GD + VK++  D D  KI L+ K +  +
Sbjct: 386 AFVRI-DGVEGLLHNEDASWDRGEKCKNLFKVGDEIEVKIIKIDKDTQKISLNHKELGDS 444

Query: 694 T 694
            
Sbjct: 445 P 445



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K+   D  T KI+ +     ++         +      + KG++  + +FG FV 
Sbjct: 418 DEIEVKIIKIDKDTQKISLNHKELGDSPISDYAKSHNQ---GDVVKGKIRDIKEFGIFVE 474

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVV 690
             G  D L+    L    V    D +K GD +   +   D++  +I+LS++ +
Sbjct: 475 LGGGIDALIRKEDLGNVSV----DSLKVGDEIEAAIAFIDEKKNRIRLSVRRL 523


>gi|23098087|ref|NP_691553.1| hypothetical protein OB0632 [Oceanobacillus iheyensis HTE831]
 gi|22776312|dbj|BAC12588.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 724

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 13/132 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I        + +G   +  I+E  G    +  DD    +   ++  +E  +  +      
Sbjct: 598 IDKKATAEKLEIGLPTLEDIMEALGKPGRDPRDDFPQPLLKKNVMNMEDLKSGME----- 652

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                  +G V  V+DFG FV     +DGLVHIS++S + V    D+   GD V V +  
Sbjct: 653 ------LQGTVRNVVDFGVFVDIGVKQDGLVHISKMSKQFVKHPMDIASVGDVVTVWVDQ 706

Query: 677 FD-DRGKIKLSM 687
            D  +G+I L+M
Sbjct: 707 VDVQKGRIALTM 718


>gi|262341079|ref|YP_003283934.1| 30S ribosomal protein S1 [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272416|gb|ACY40324.1| 30S ribosomal protein S1 [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 605

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 11/152 (7%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P   I   P       +G         +E    K+N      V      +    
Sbjct: 167 DIECFLPGSHINVKPVRDYDTYVGKT-------MEVKVVKINQKTKNVVVSHKVLIERDI 219

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
              E  + +    +  ++ +G++  ++ +GAFV   G  D L+HI+ +S   +   ++VV
Sbjct: 220 E--EQRKEMISKLDKGQVLEGKIKNILPYGAFVDL-GGVDALLHITDMSWPHINHPTEVV 276

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           +    +   +L  D D+ +++L +K +  +  
Sbjct: 277 QLEQELKFVVLGVDKDKNRVQLGLKQLQPHPW 308



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
               S+    ++    KG+V  + D+GAFV      + L+HIS++S    ++ T D V+ 
Sbjct: 306 HPWNSLDKDLKIGSKVKGKVTVLADYGAFVEIIPGVEALLHISEMSWSTDLSSTQDFVQI 365

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           GD +   +L  D + + + LS+K + Q+    I
Sbjct: 366 GDELEAIILTIDRQERKMSLSVKQLTQDPWGNI 398



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR-GK 682
           G V +  +FG F+       G+V+ + LS  +++   S+     D + V +L  D +  +
Sbjct: 410 GVVKRFTNFGVFLELEKGISGVVYTNDLSWVKKIKHPSEFCNISDKLEVIVLSLDTQARR 469

Query: 683 IKLSMKVVDQNTG 695
           + L  K + +N  
Sbjct: 470 LNLGHKQLSENPW 482



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
           + +  E +   E+        +  +IY+G V  + D    V      +G + IS+   + 
Sbjct: 43  NETQEERKKFEEIYTKTLPNIQELEIYQGIVTHIADKTVIVDIGFKAEGAIPISEFRED- 101

Query: 657 VAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
                  ++ G  + V ++  D +G+  LS
Sbjct: 102 -----SNIQTGSKIEVMVVKMDYKGQCILS 126


>gi|116790591|gb|ABK25672.1| unknown [Picea sitchensis]
          Length = 425

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVMD 632
           Q   K+NI++    +I    +   E         R+ +        +  +  G V  +  
Sbjct: 230 QISTKINIEELVNKEIPLKFMEVDEEQTRLVLSNRKAMADSQAQLGIGSVVLGTVQTIKP 289

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           +GAFV   G  +GL+H+SQ+S +RVA    +++ GDT+ V +L  D +RG++ LS K ++
Sbjct: 290 YGAFVDL-GGINGLLHVSQISHDRVADVGTILQPGDTLKVMILSHDRERGRVSLSTKKLE 348

Query: 692 QNTG 695
              G
Sbjct: 349 PTPG 352


>gi|121716713|ref|XP_001275889.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
 gi|119404046|gb|EAW14463.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
          Length = 1819

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF--VHFCG 641
            ++ + D    ++  +                +  +V +I  G+V KV +FGAF  V    
Sbjct: 1284 RITLVDPEQGRLQMTLKESALDPNYKAPVTINDLKVGQIVTGKVRKVEEFGAFIVVDRSA 1343

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     + +EGD V  K++  D D+GKI  S+K 
Sbjct: 1344 NISGLCHRSEMADKRVENAKALYEEGDVVKAKIIKIDRDQGKISFSLKA 1392



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +   GA V F G+  G + +S++S   +   S   ++G  V V  L  D   GK+
Sbjct: 656 GTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAFIKDPSQHFRQGQVVNVHALSVDPSLGKL 715

Query: 684 KLSMKV 689
            +S K 
Sbjct: 716 AVSCKD 721



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN + +G V +V D G FV         V +S LS   + +  D  + 
Sbjct: 1218 QDPEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSDLSDSYLKEWKDSFQV 1277

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               +  ++   D ++G++++++K   +D N   P+
Sbjct: 1278 DQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPV 1312


>gi|116516081|ref|YP_816286.1| S1 RNA-binding domain-containing protein [Streptococcus pneumoniae
           D39]
 gi|148988340|ref|ZP_01819787.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
 gi|225856571|ref|YP_002738082.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
 gi|237649296|ref|ZP_04523548.1| S1 RNA binding domain protein [Streptococcus pneumoniae CCRI 1974]
 gi|116076657|gb|ABJ54377.1| S1 RNA binding domain [Streptococcus pneumoniae D39]
 gi|147926021|gb|EDK77095.1| S1 RNA binding domain [Streptococcus pneumoniae SP6-BS73]
 gi|225725987|gb|ACO21839.1| S1 RNA binding domain protein [Streptococcus pneumoniae P1031]
 gi|332076190|gb|EGI86656.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41301]
          Length = 709

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|91214538|ref|ZP_01251511.1| 30S ribosomal protein S1 [Psychroflexus torquis ATCC 700755]
 gi|91186965|gb|EAS73335.1| 30S ribosomal protein S1 [Psychroflexus torquis ATCC 700755]
          Length = 609

 Score = 77.6 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 184 QIDVKPIRDYDAYVGKSMEFKV----VKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 237

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   ++VV+    + V +LD
Sbjct: 238 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEVVELDQKLNVVILD 296

Query: 677 FD-DRGKIKLSMKVVDQNTG 695
           FD D+ +I+L +K + ++  
Sbjct: 297 FDEDKTRIQLGLKQLHKHPW 316



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVV 664
            +    ++ +  ++  +  G V  + D+GAF+      +GL+H+S++S    +    D V
Sbjct: 312 HKHPWDALDEGLKIGDVVNGTVTVIADYGAFIEVEEGVEGLIHVSEMSWSTHLRSAQDFV 371

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           K GD V  K+L  D +  K+ L +K +  +    I
Sbjct: 372 KVGDKVEAKILTLDREDRKMSLGIKQLTPDPWTDI 406



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + GQV    +FG FV      DGL++IS LS  +++   S+  K 
Sbjct: 401 DPWTDITTKYPVGSKHVGQVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCKV 460

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD + V +L+ D  G+ + L  K  + N  
Sbjct: 461 GDQLNVVVLELDVDGRKLSLGHKQTETNPW 490


>gi|329962073|ref|ZP_08300084.1| 30S ribosomal protein S1 [Bacteroides fluxus YIT 12057]
 gi|328530721|gb|EGF57579.1| 30S ribosomal protein S1 [Bacteroides fluxus YIT 12057]
          Length = 596

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 374 DPWETIEEKYPIGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDPDLKVGDHVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLKADPWETI 379


>gi|329954547|ref|ZP_08295638.1| Tex-like protein [Bacteroides clarus YIT 12056]
 gi|328527515|gb|EGF54512.1| Tex-like protein [Bacteroides clarus YIT 12056]
          Length = 713

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 14/167 (8%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HI+ +M+  L  S  +L     +   + I P++  +   +G   ++ I+++   K   D 
Sbjct: 560 HIVEQMAADLGCSVAEL--LANKELRLKIQPERYLSPT-VGMPTLKDILQEL-EKPGRDP 615

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G +K+      +     + +R   ++P       G V  + +FGAFV      +GL+H+
Sbjct: 616 RGPIKVFEF--DKNVRTIDDLRIGMELP-------GIVGNITNFGAFVDIGIKENGLIHL 666

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           SQL+ + V+  +++V     V VK+L  D +R +I+L+M  V+Q  G
Sbjct: 667 SQLAQKYVSDPNEIVSIHQQVRVKVLSVDTERKRIQLTMIGVEQGNG 713


>gi|317495369|ref|ZP_07953738.1| tex protein [Gemella moribillum M424]
 gi|316914428|gb|EFV35905.1| tex protein [Gemella moribillum M424]
          Length = 722

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +   ++   IG+G + +  I++     +                    A+ +++S     
Sbjct: 599 VDKKELAEKIGIGIETLEDIIKDLKQPL-------------RDERESFAKPLLKSDILTI 645

Query: 618 EVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +  ++     G V  +  FGAF+     +D +VH+S++S   +    DV+  G  V V +
Sbjct: 646 DDLQVGVKLAGTVRNITQFGAFIDIGLKQDAMVHVSKISKNYIKNPLDVLSVGQIVDVYV 705

Query: 675 LDFDD-RGKIKLSM 687
           +D D  RG++ L+M
Sbjct: 706 IDIDKQRGRVALAM 719


>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
 gi|108877318|gb|EAT41543.1| conserved hypothetical protein [Aedes aegypti]
          Length = 217

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 19/228 (8%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
            ++R +  ++ LL R+ GS++  +G+T  +  V  G  E +     L         +   
Sbjct: 8   NSLRPMHCELNLLTRSDGSAMLTQGETAVVASVN-GPIEVK-----LQHMNVEKSHIDIY 61

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F P +      MG+ + R +    L +      +         + I  +  +  G     
Sbjct: 62  FKPRSG-----MGSVNDRLLES--LIKNTYESAILTGLHPRTAISIQLQEMQDQGGLVAC 114

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            +    LALM++G+ +   VA +   L +DGD   I+ D    +       F     +  
Sbjct: 115 AINAVCLALMNSGIEMKFLVAAVHSVLREDGD---IVLDPDALQSKDARAKFTFVFENC- 170

Query: 500 ITAMQMDMKIGG-ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            T   + +   G  +      AL+ A+     +    + ++ + R  L
Sbjct: 171 -TRNTVSIYTHGKFTTEQYHRALKMAEEAVEKVFGFYADIVGKQREVL 217



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 78/227 (34%), Gaps = 28/227 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+  E   + R SDG+ + T GET V+A+V             P+ V  Q        I
Sbjct: 11  RPMHCELNLLTR-SDGSAMLTQGETAVVASVNG-----------PIEVKLQHMNVEKSHI 58

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
              +  R    + N+ L+  +I  +            T + I + +   +      ++ A
Sbjct: 59  DIYFKPRSGMGSVNDRLLESLIKNTYESAILTGLHPRTAISIQLQEMQDQGGLVACAINA 118

Query: 134 ASAALMLSGLPFEGPVVGA-QVDYINGQYVLNPRL---DEDQGSLDLFVSGTQDAVLMVE 189
              ALM SG+  +  V     V   +G  VL+P      + +              + + 
Sbjct: 119 VCLALMNSGIEMKFLVAAVHSVLREDGDIVLDPDALQSKDARAKFTFVFENCTRNTVSIY 178

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKL----AKMCAKEPIVI 232
                 +E          H   K   EA+ K+    A +  K+  V+
Sbjct: 179 THGKFTTEQY--------HRALKMAEEAVEKVFGFYADIVGKQREVL 217


>gi|301794055|emb|CBW36456.1| putative transcription accessory protein [Streptococcus pneumoniae
           INV104]
          Length = 709

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|255029855|ref|ZP_05301806.1| polynucleotide phosphorylase/polyadenylase [Listeria
          monocytogenes LO28]
          Length = 50

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 1  MFDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL 50
          M +      EWAG+ L +E G++A+Q+ GA L  YG+TVVL   V  +  
Sbjct: 1  MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKP 50


>gi|237711154|ref|ZP_04541635.1| 30S ribosomal protein S1 [Bacteroides sp. 9_1_42FAA]
 gi|237727518|ref|ZP_04557999.1| 30S ribosomal protein S1 [Bacteroides sp. D4]
 gi|265750743|ref|ZP_06086806.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_33FAA]
 gi|229434374|gb|EEO44451.1| 30S ribosomal protein S1 [Bacteroides dorei 5_1_36/D4]
 gi|229454998|gb|EEO60719.1| 30S ribosomal protein S1 [Bacteroides sp. 9_1_42FAA]
 gi|263237639|gb|EEZ23089.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_33FAA]
          Length = 598

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDANLQVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D D  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDRDERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|212694510|ref|ZP_03302638.1| hypothetical protein BACDOR_04038 [Bacteroides dorei DSM 17855]
 gi|212663011|gb|EEB23585.1| hypothetical protein BACDOR_04038 [Bacteroides dorei DSM 17855]
          Length = 598

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDANLQVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D D  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDRDERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|183603638|ref|ZP_02964444.1| protein tex [Streptococcus pneumoniae CDC3059-06]
 gi|183575709|gb|EDT96237.1| protein tex [Streptococcus pneumoniae CDC3059-06]
          Length = 805

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 729 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 788

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 789 TEREKVNLSLLAPNET 804


>gi|163756082|ref|ZP_02163198.1| 30S ribosomal protein S1 [Kordia algicida OT-1]
 gi|161323956|gb|EDP95289.1| 30S ribosomal protein S1 [Kordia algicida OT-1]
          Length = 591

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  + I   
Sbjct: 168 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 221

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  R+   ++VV+    + V +LD
Sbjct: 222 LEKGQVLEGVVKNITSYGVFIDL-GGVDGLIHITDLSWSRINHPNEVVELDQKLNVVILD 280

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K +  +  + +
Sbjct: 281 FDDNKSRIQLGLKQLSAHPWEAL 303



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++  AK+   D    K++           +    IT    V   + G V    +FG FV 
Sbjct: 359 DEVEAKILTLDREDRKMSLGIKQMTP---DPWTDITTKYPVGSKHTGTVRNFTNFGVFVE 415

Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
                DGL++IS LS  ++V   S+ V  GD + V +L+ D  G+ + L  K   +N  
Sbjct: 416 LEEGIDGLIYISDLSWTKKVKHPSEFVTVGDKLEVLVLELDVEGRKLSLGHKQTTENPW 474



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
               ++    ++  + KG+VV + D+GAF+      +GL+H+S++S    +    D VK 
Sbjct: 298 HPWEALDSELKIGDVVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVKV 357

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V  K+L  D +  K+ L +K +  +    I
Sbjct: 358 GDEVEAKILTLDREDRKMSLGIKQMTPDPWTDI 390


>gi|307704740|ref|ZP_07641637.1| protein tex [Streptococcus mitis SK597]
 gi|307621719|gb|EFO00759.1| protein tex [Streptococcus mitis SK597]
          Length = 709

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|150005117|ref|YP_001299861.1| 30S ribosomal protein S1 [Bacteroides vulgatus ATCC 8482]
 gi|254883252|ref|ZP_05255962.1| 30S ribosomal protein S1 [Bacteroides sp. 4_3_47FAA]
 gi|294778927|ref|ZP_06744343.1| 30S ribosomal protein S1 [Bacteroides vulgatus PC510]
 gi|319642627|ref|ZP_07997273.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_40A]
 gi|149933541|gb|ABR40239.1| 30S ribosomal protein S1 [Bacteroides vulgatus ATCC 8482]
 gi|254836045|gb|EET16354.1| 30S ribosomal protein S1 [Bacteroides sp. 4_3_47FAA]
 gi|294447236|gb|EFG15820.1| 30S ribosomal protein S1 [Bacteroides vulgatus PC510]
 gi|317385715|gb|EFV66648.1| 30S ribosomal protein S1 [Bacteroides sp. 3_1_40A]
          Length = 598

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDANLQVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D D  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVILTLDRDERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|152990412|ref|YP_001356134.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
 gi|151422273|dbj|BAF69777.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
          Length = 558

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
                I   +     K++ ++D  V    + L +I   RE    +  +     I +G + 
Sbjct: 154 KNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKRE--EIVNQLLNEGTIVEGTIK 211

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           K+ ++G FV      +GLVH +++S +     +   +EGD V VK +DF+ ++ ++ LS+
Sbjct: 212 KITNYGMFVEVAPQVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLSI 271

Query: 688 KVVDQNTGKPI 698
           K    +  + I
Sbjct: 272 KATQPDPWEEI 282



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTP-----RVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
            + +  +L  +     +   ++           V I  I P      +G   + +  I E
Sbjct: 261 NKEKRRLLLSIKATQPDPWEEIKGELEPGDVINVTISNIEPYGAFVDLGNDIEGLLHISE 320

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAR---------------EMIRSITDVPEVNKIYK 624
            +  K        V+       E+                   +         +   + +
Sbjct: 321 MSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLRVSLKNLLPKPFEEFLSNYKEGDVVE 380

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G+V  + DFGAFV   G+ +GL+H   +S E+  K  D    G+ V VK+   D D  KI
Sbjct: 381 GEVTSLTDFGAFVRI-GSVEGLLHNQDISWEKGQKAKDAFNVGEKVEVKIAKIDRDNEKI 439

Query: 684 KLSMKVVDQNT 694
            L  K + ++ 
Sbjct: 440 SLDRKSLLESP 450



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
                +   VE   AK++ D++       S L         +       +V  I KG V 
Sbjct: 416 KDAFNVGEKVEVKIAKIDRDNEKISLDRKSLLES------PLEKFAKEHKVGDIVKGTVK 469

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + +FG FV      DGL+    L   +     + ++ GD +   +   D    +++LS+
Sbjct: 470 DIKEFGVFVALDENVDGLIRNEDLYPLK----KEEIQSGDEIEAVISHLDTKNNRLRLSV 525

Query: 688 KVVDQNTGKP 697
           + + +   K 
Sbjct: 526 RRLQKMKEKE 535


>gi|168011566|ref|XP_001758474.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690509|gb|EDQ76876.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  V  +GAF+   G   GL+HISQ+S +R+     V+  GD + V +L  D
Sbjct: 265 IGSVVVGTVQTVKPYGAFIDI-GGVSGLLHISQISHDRLTTVETVLSPGDKLKVMILSQD 323

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG+I LS K ++   G
Sbjct: 324 KDRGRISLSTKKLEPTPG 341


>gi|160902641|ref|YP_001568222.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360285|gb|ABX31899.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 720

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 83/237 (35%), Gaps = 16/237 (6%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           +G+  +   + +L  +SG    L     +    +         + + G  E     +   
Sbjct: 478 VGVNLNTASYSLLEYVSGITSSLAKKIVQYRQKNGSFNKRADLLNVKGFGEKAFEQSAGF 537

Query: 524 ----AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD------QIRNVIGMGGKV 573
                    L I     +    +   +     R++ + I         ++  ++    + 
Sbjct: 538 LRIIDGENPLEITGIHPESYEAAEKLINIHGYRLDDLKIKEKLDPLKLKVSQLL-NEKEN 596

Query: 574 IRGIVEQTG----AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           ++ I E+        ++I  +             +          +  + +    G++  
Sbjct: 597 LKSISEELEIGEYTLIDILKELQKPGRDPRDEMPQPQLMDDILKFEDLKESMRLSGKITN 656

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           + DFGAFV      +GL+H S L+   VA  +D+V+  D V V++++ D  R +I L
Sbjct: 657 ITDFGAFVDLGIKENGLIHKSNLAERFVAHPTDIVQINDIVEVEIINIDKTRRRIGL 713


>gi|237715632|ref|ZP_04546113.1| 30S ribosomal protein S1 [Bacteroides sp. D1]
 gi|262408641|ref|ZP_06085187.1| ribosomal protein S1 [Bacteroides sp. 2_1_22]
 gi|294646672|ref|ZP_06724297.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CC 2a]
 gi|229444341|gb|EEO50132.1| 30S ribosomal protein S1 [Bacteroides sp. D1]
 gi|262353506|gb|EEZ02600.1| ribosomal protein S1 [Bacteroides sp. 2_1_22]
 gi|292637960|gb|EFF56353.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CC 2a]
          Length = 599

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D D  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKDNRRLSLGHKQLEENPW 463



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|289742861|gb|ADD20178.1| exosomal 3'-5' exoribonuclease complex subunit Rrp46 [Glossina
           morsitans morsitans]
          Length = 245

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 315 DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDF 374
           D   +  +R ++ ++  L RT GS+LFI+G T  +    LG  E    + +L    +   
Sbjct: 13  DAVKNTKLRTLNCELNPLTRTDGSTLFIQGATCVLAS-MLGPVEV--KLQNLK-IDKAHV 68

Query: 375 MMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
              Y           + G P+ R+     + +      L         + I  +  +  G
Sbjct: 69  DCIY---------RPKAGLPTIRDKIRETMIKDTCEAALLSALHPRTLISIQLQELDDRG 119

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
                 +  + +AL+  GVP+   VA +   + K+G+   I+ D    +       F   
Sbjct: 120 GLDACAINAACMALLIGGVPMKFTVAAVHCVVDKNGE---IVLDPDQLQAADNRASFTFV 176

Query: 495 G 495
            
Sbjct: 177 F 177



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 23/215 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R L  E   + R +DG+ L   G T VLA+++    +K      D   +   Y+ +    
Sbjct: 21  RTLNCELNPLTR-TDGSTLFIQGATCVLASMLGPVEVKLQNLKIDKAHVDCIYRPKA--- 76

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                        PT  + +   MI  +            T + I + + D        +
Sbjct: 77  -----------GLPTIRDKIRETMIKDTCEAALLSALHPRTLISIQLQELDDRGGLDACA 125

Query: 131 MVAASAALMLSGLPFEGPVVGAQ-VDYINGQYVLNPR---LDEDQGSLDLFVSGTQDAVL 186
           + AA  AL++ G+P +  V     V   NG+ VL+P      +++ S        +  ++
Sbjct: 126 INAACMALLIGGVPMKFTVAAVHCVVDKNGEIVLDPDQLQAADNRASFTFVFDSVERDLV 185

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            V         +   DA +        + +   ++
Sbjct: 186 AVHSFGCFK-INQFKDAHLICLAASSTLFDFYREI 219


>gi|167765125|ref|ZP_02437238.1| hypothetical protein BACSTE_03511 [Bacteroides stercoris ATCC
           43183]
 gi|167696753|gb|EDS13332.1| hypothetical protein BACSTE_03511 [Bacteroides stercoris ATCC
           43183]
          Length = 597

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 374 DPWETIEEKYPIGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIDVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDPNLKVGDHVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLKADPWETI 379


>gi|41469635|gb|AAS07358.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
           sativa Japonica Group]
 gi|108712065|gb|ABF99860.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
           Japonica Group]
 gi|218194088|gb|EEC76515.1| hypothetical protein OsI_14295 [Oryza sativa Indica Group]
 gi|222626154|gb|EEE60286.1| hypothetical protein OsJ_13343 [Oryza sativa Japonica Group]
          Length = 379

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           + ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGDTV
Sbjct: 176 LVKIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTV 235

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNT 694
            V +++ D ++ +I LS++ ++++ 
Sbjct: 236 KVIVVNIDMEKSRIALSIRQLEEDP 260


>gi|297835412|ref|XP_002885588.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331428|gb|EFH61847.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVV 664
               +    V  ++ G+V  V D+GAF+H           GLVH+S++S + V    DV+
Sbjct: 186 WPKYSQNVSVGDVFTGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVL 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           ++GD V V + + D ++ +I LS+K ++ + 
Sbjct: 246 RDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276


>gi|298481477|ref|ZP_06999669.1| ribosomal protein S1 [Bacteroides sp. D22]
 gi|295086940|emb|CBK68463.1| SSU ribosomal protein S1P [Bacteroides xylanisolvens XB1A]
 gi|298272341|gb|EFI13910.1| ribosomal protein S1 [Bacteroides sp. D22]
          Length = 599

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D D  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKDNRRLSLGHKQLEENPW 463



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|255693432|ref|ZP_05417107.1| ribosomal protein S1 [Bacteroides finegoldii DSM 17565]
 gi|260620818|gb|EEX43689.1| ribosomal protein S1 [Bacteroides finegoldii DSM 17565]
          Length = 600

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|160887146|ref|ZP_02068149.1| hypothetical protein BACOVA_05162 [Bacteroides ovatus ATCC 8483]
 gi|237721414|ref|ZP_04551895.1| 30S ribosomal protein S1 [Bacteroides sp. 2_2_4]
 gi|260171551|ref|ZP_05757963.1| 30S ribosomal protein S1 [Bacteroides sp. D2]
 gi|293370856|ref|ZP_06617401.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CMC 3f]
 gi|299148638|ref|ZP_07041700.1| ribosomal protein S1 [Bacteroides sp. 3_1_23]
 gi|315919865|ref|ZP_07916105.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107557|gb|EDO09302.1| hypothetical protein BACOVA_05162 [Bacteroides ovatus ATCC 8483]
 gi|229449210|gb|EEO55001.1| 30S ribosomal protein S1 [Bacteroides sp. 2_2_4]
 gi|292634072|gb|EFF52616.1| 30S ribosomal protein S1 [Bacteroides ovatus SD CMC 3f]
 gi|298513399|gb|EFI37286.1| ribosomal protein S1 [Bacteroides sp. 3_1_23]
 gi|313693740|gb|EFS30575.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 600

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|15925053|ref|NP_372587.1| transcription accessory protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927638|ref|NP_375171.1| hypothetical protein SA1868 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268515|ref|YP_001247458.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394578|ref|YP_001317253.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980379|ref|YP_001442638.1| hypothetical protein SAHV_2048 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006852|ref|ZP_05145453.2| hypothetical protein SauraM_10300 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794513|ref|ZP_05643492.1| transcription accessory protein [Staphylococcus aureus A9781]
 gi|258411257|ref|ZP_05681535.1| transcription accessory protein [Staphylococcus aureus A9763]
 gi|258419773|ref|ZP_05682739.1| transcription accessory protein [Staphylococcus aureus A9719]
 gi|258438080|ref|ZP_05689459.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258441328|ref|ZP_05690813.1| transcription accessory protein [Staphylococcus aureus A8115]
 gi|258446978|ref|ZP_05695130.1| transcription accessory protein [Staphylococcus aureus A6300]
 gi|258449789|ref|ZP_05697889.1| transcription accessory protein [Staphylococcus aureus A6224]
 gi|258453473|ref|ZP_05701452.1| transcription accessory protein [Staphylococcus aureus A5937]
 gi|269203697|ref|YP_003282966.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282895211|ref|ZP_06303427.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8117]
 gi|282929290|ref|ZP_06336861.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A10102]
 gi|295407609|ref|ZP_06817400.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8819]
 gi|296275694|ref|ZP_06858201.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297246606|ref|ZP_06930437.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8796]
 gi|13701858|dbj|BAB43150.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247836|dbj|BAB58225.1| similar to RNA binding protein, contains S1 domain [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|147741584|gb|ABQ49882.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947030|gb|ABR52966.1| RNA binding S1 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722514|dbj|BAF78931.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788485|gb|EEV26825.1| transcription accessory protein [Staphylococcus aureus A9781]
 gi|257840012|gb|EEV64478.1| transcription accessory protein [Staphylococcus aureus A9763]
 gi|257844255|gb|EEV68638.1| transcription accessory protein [Staphylococcus aureus A9719]
 gi|257848497|gb|EEV72487.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257852372|gb|EEV76297.1| transcription accessory protein [Staphylococcus aureus A8115]
 gi|257854211|gb|EEV77162.1| transcription accessory protein [Staphylococcus aureus A6300]
 gi|257856963|gb|EEV79864.1| transcription accessory protein [Staphylococcus aureus A6224]
 gi|257864345|gb|EEV87094.1| transcription accessory protein [Staphylococcus aureus A5937]
 gi|262075987|gb|ACY11960.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282589100|gb|EFB94199.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A10102]
 gi|282762401|gb|EFC02545.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8117]
 gi|285817728|gb|ADC38215.1| Transcription accessory protein (S1 RNA-binding domain)
           [Staphylococcus aureus 04-02981]
 gi|294967507|gb|EFG43545.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8819]
 gi|297176506|gb|EFH35772.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           A8796]
 gi|312830415|emb|CBX35257.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128402|gb|EFT84411.1| hypothetical protein CGSSa03_08001 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727782|gb|EGG64234.1| Tex-like protein N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 716

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFDTPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWVYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|300769616|ref|ZP_07079501.1| RNA binding protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300492809|gb|EFK27992.1| RNA binding protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 133

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +     G+V  +  +GAFV   G   GL+HIS+     V   ++ +K G  V V +LD D
Sbjct: 6   IGMRVHGRVTGIQPYGAFVTLDGEHQGLIHISECHEGYVKSITEYLKVGQAVDVIILDID 65

Query: 679 D-RGKIKLSMKVVDQNT 694
           +  GKI LS++ ++   
Sbjct: 66  EYTGKISLSLRCIEHQP 82


>gi|53712335|ref|YP_098327.1| 30S ribosomal protein S1 [Bacteroides fragilis YCH46]
 gi|60680506|ref|YP_210650.1| 30S ribosomal protein S1 [Bacteroides fragilis NCTC 9343]
 gi|253563628|ref|ZP_04841085.1| 30S ribosomal protein S1 [Bacteroides sp. 3_2_5]
 gi|255007845|ref|ZP_05279971.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12]
 gi|265762527|ref|ZP_06091095.1| ribosomal protein S1 [Bacteroides sp. 2_1_16]
 gi|313145551|ref|ZP_07807744.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12]
 gi|52215200|dbj|BAD47793.1| 30S ribosomal protein S1 [Bacteroides fragilis YCH46]
 gi|60491940|emb|CAH06700.1| putative 30S ribosomal protein S1 [Bacteroides fragilis NCTC 9343]
 gi|251947404|gb|EES87686.1| 30S ribosomal protein S1 [Bacteroides sp. 3_2_5]
 gi|263255135|gb|EEZ26481.1| ribosomal protein S1 [Bacteroides sp. 2_1_16]
 gi|301162043|emb|CBW21587.1| putative 30S ribosomal protein S1 [Bacteroides fragilis 638R]
 gi|313134318|gb|EFR51678.1| 30S ribosomal protein S1 [Bacteroides fragilis 3_1_12]
          Length = 597

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDPNLQVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|28378830|ref|NP_785722.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum WCFS1]
 gi|254557036|ref|YP_003063453.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum JDM1]
 gi|308181030|ref|YP_003925158.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28271667|emb|CAD64573.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum WCFS1]
 gi|254045963|gb|ACT62756.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum JDM1]
 gi|308046521|gb|ADN99064.1| polyribonucleotide nucleotidyltransferase (putative) [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 135

 Score = 77.6 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +     G+V  +  +GAFV   G   GL+HIS+     V   ++ +K G  V V +LD D
Sbjct: 8   IGMRVHGRVTGIQPYGAFVTLDGEHQGLIHISECHEGYVKSITEYLKVGQAVDVIILDID 67

Query: 679 D-RGKIKLSMKVVDQNT 694
           +  GKI LS++ ++   
Sbjct: 68  EYTGKISLSLRCIEHQP 84


>gi|329956977|ref|ZP_08297545.1| 30S ribosomal protein S1 [Bacteroides clarus YIT 12056]
 gi|328523734|gb|EGF50826.1| 30S ribosomal protein S1 [Bacteroides clarus YIT 12056]
          Length = 597

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 374 DPWETIEEKYPIGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIDVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDPNLKVGDHVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLKADPWETI 379


>gi|218129766|ref|ZP_03458570.1| hypothetical protein BACEGG_01345 [Bacteroides eggerthii DSM 20697]
 gi|317475886|ref|ZP_07935143.1| ribosomal protein S1 [Bacteroides eggerthii 1_2_48FAA]
 gi|217987876|gb|EEC54201.1| hypothetical protein BACEGG_01345 [Bacteroides eggerthii DSM 20697]
 gi|316908046|gb|EFV29743.1| ribosomal protein S1 [Bacteroides eggerthii 1_2_48FAA]
          Length = 597

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 374 DPWETIEEKYPIGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIDVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDPNLKVGDHVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLKADPWETI 379


>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
          Length = 550

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 25/209 (11%)

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-- 566
             G   +++V+A  +A   + H+   +   LS    ++ +     + + +      +   
Sbjct: 241 NEGDEVSVVVLAYDKA---KQHLSLSIKAALSNPWKEIKDQLEVGDTITVTVSNFESYGA 297

Query: 567 ---IGMGGKVIRGIVEQTGAK--------VNIDDDGTVKIASSSLAEI-------EAARE 608
              +G   + +  I E +  K        + I D+  V++   ++ +            +
Sbjct: 298 FVDLGNDIEGLLHISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEK 357

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 +  +V  + KG++  + DFGAFV+  G  DGL+H  + S E  AK   + K+GD
Sbjct: 358 PFTKFVNEHKVGDVIKGKIATLTDFGAFVNI-GDVDGLLHNEEASWESNAKCKTLFKKGD 416

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V V+++  D ++  I LS+K +  +  K
Sbjct: 417 EVEVRIIKIDKEKENISLSIKDISDSPAK 445



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID +      S        A+    +     ++  I KG V  + DFG F+      D
Sbjct: 423 IKIDKEKENISLSIKDISDSPAKRFQDAY----KLGDIVKGPVKDIKDFGIFIKLENNLD 478

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GL+        +    +D VK GD +   +++ D  + +++LS++ ++Q   + ++
Sbjct: 479 GLIRNEDFGPLK----ADEVKNGDEIEAVIINIDTKKNRVRLSVRRLEQQQEREVL 530



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               + ++ E  +   G + K+  +G FV   G  DGLV+ +++S +     ++   EGD
Sbjct: 186 KDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANYYNEGD 244

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            V V +L +D  +  + LS+K    N  K I
Sbjct: 245 EVSVVVLAYDKAKQHLSLSIKAALSNPWKEI 275


>gi|60681362|ref|YP_211506.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
 gi|60492796|emb|CAH07570.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
          Length = 707

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
               G V  + +FGAFV      +GLVH+SQL+   +   ++VV     V VK+L  D +
Sbjct: 637 MTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQHVTVKVLSIDLE 696

Query: 680 RGKIKLSMKV 689
           R +I+L+MK 
Sbjct: 697 RKRIQLTMKE 706


>gi|319901380|ref|YP_004161108.1| SSU ribosomal protein S1P [Bacteroides helcogenes P 36-108]
 gi|319416411|gb|ADV43522.1| SSU ribosomal protein S1P [Bacteroides helcogenes P 36-108]
          Length = 596

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 374 DPWETIEEKYPLGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIDVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDPNLKVGDHVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLKADPWETI 379


>gi|320526971|ref|ZP_08028160.1| general stress protein 13 [Solobacterium moorei F0204]
 gi|320132556|gb|EFW25097.1| general stress protein 13 [Solobacterium moorei F0204]
          Length = 122

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + +  +I +G++  +  +GAFV       GL+HIS++S   V   S  V  GD V +K+
Sbjct: 1   MIYKPGQIVEGKITGIQPYGAFVALEHHVSGLIHISEISDGFVKDISKFVAVGDVVKLKV 60

Query: 675 LDFDDR-GKIKLSMKVVDQNTGK 696
           L+ DD+   +KLS+K + +   +
Sbjct: 61  LECDDKSSHVKLSLKALQKTHSR 83


>gi|224143592|ref|XP_002325009.1| predicted protein [Populus trichocarpa]
 gi|222866443|gb|EEF03574.1| predicted protein [Populus trichocarpa]
          Length = 976

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
            + G+V  +  FGAFV F    DGLVH+S+LS   V     VV  G  V V+L++ + + 
Sbjct: 150 TFTGKVRSIQPFGAFVDFGAFTDGLVHVSKLSDSFVKDVGSVVSVGQEVKVRLVEANTET 209

Query: 681 GKIKLSMKVVDQNT 694
           G+I L+M+  D  +
Sbjct: 210 GRISLTMRENDDTS 223



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAK-------VNIDDDGTVKIASSSLAEIEAAREMIRS 612
              + +V+ +G +V   +VE               DD    +  + S A   + R+  R 
Sbjct: 185 VKDVGSVVSVGQEVKVRLVEANTETGRISLTMRENDDTSKFQQRNDSPATGSSNRQAARR 244

Query: 613 ITDVPEVNK------------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-- 658
            T  P   K              +G V  +   GAF+      +G +  S+ S +  A  
Sbjct: 245 NTSKPNQRKDEVKSSKFVKGQNLEGTVKNLTRSGAFISLPEGEEGFLPRSEESDDVFAGM 304

Query: 659 KTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
                ++ G  V V++L    RG++ L+MK  D +
Sbjct: 305 MGDSSLQIGQEVSVRVLRI-TRGQVTLTMKKEDAD 338


>gi|253566765|ref|ZP_04844217.1| RNA-binding protein [Bacteroides sp. 3_2_5]
 gi|265763188|ref|ZP_06091756.1| RNA-binding protein [Bacteroides sp. 2_1_16]
 gi|251944328|gb|EES84817.1| RNA-binding protein [Bacteroides sp. 3_2_5]
 gi|263255796|gb|EEZ27142.1| RNA-binding protein [Bacteroides sp. 2_1_16]
 gi|301162818|emb|CBW22365.1| putative RNA-binding protein [Bacteroides fragilis 638R]
          Length = 707

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
               G V  + +FGAFV      +GLVH+SQL+   +   ++VV     V VK+L  D +
Sbjct: 637 MTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQHVTVKVLSIDLE 696

Query: 680 RGKIKLSMKV 689
           R +I+L+MK 
Sbjct: 697 RKRIQLTMKE 706


>gi|254570329|ref|XP_002492274.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Pichia pastoris GS115]
 gi|238032072|emb|CAY69994.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Pichia pastoris GS115]
 gi|328353721|emb|CCA40119.1| Polyribonucleotide nucleotidyltransferase [Pichia pastoris CBS 7435]
          Length = 1694

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 581  TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            TG  V+  ++  +    +                D  +V  +Y+G + K+MDFG F+   
Sbjct: 1201 TGKIVDAGEERRI--LMTLKESQVGQGTGALHQFDDLKVGDVYEGTIKKIMDFGVFITLD 1258

Query: 641  G--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
            G  + DGL H SQ+S  ++     +  +GD V VK+LD +   K + L MK 
Sbjct: 1259 GVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKILDINRNKKQLSLGMKA 1310



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
            DD T +I  S  +E   A++ +    +  +   I +G + ++ +FG +V        LV 
Sbjct: 1121 DDTTRQIFVSLRSEN--AKDKLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVR 1178

Query: 649  ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK--VVDQNTG 695
            ++ +S   +      VK    V  K++D  +  +I +++K   V Q TG
Sbjct: 1179 VTDISDLFLTDWKKHVKLNQFVTGKIVDAGEERRILMTLKESQVGQGTG 1227



 Score = 46.4 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
              + ++  S  ++P V +I  G V  + + G F+ F     G      ++ E   K   
Sbjct: 761 ASKSGQLPASFEELPAVGEIVYGYVHTITNAGLFIEFADGLSGFARTKDITDEPSDKLPS 820

Query: 663 VVKEGDTVWVKLLDFDDR-GKIKLSMKVVD 691
           +  +  +V  ++L  DD   K +L++K +D
Sbjct: 821 LYFKNQSVRARILKLDDEFRKFRLTLKDID 850



 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD---DRGKIK--LS 686
             G  + F     G +  +++S   V +  D +K   T+ V++   D   ++ ++   LS
Sbjct: 605 PTGVLMSFFNNISGFLPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPATNKFRVSCLLS 664

Query: 687 MKVVDQNTGKPI 698
            K + +   K I
Sbjct: 665 -KDLSEEQEKKI 675


>gi|154147885|ref|YP_001406069.1| 30S ribosomal protein S1 [Campylobacter hominis ATCC BAA-381]
 gi|153803894|gb|ABS50901.1| 30S ribosomal protein S1 [Campylobacter hominis ATCC BAA-381]
          Length = 557

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQT 581
            + H+   +   L +   ++ +     + + +    I        +G   +    I E +
Sbjct: 261 EKRHLSLSIKAALPDPWDEIKDNLEVGDTIQVTVSNIEPYGAFVDLGNDIEGFLHISEIS 320

Query: 582 GAK--------VNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             K        ++   +  V++   +  +            +         +V  I +G 
Sbjct: 321 WDKNIKNPKDFISEGQEINVEVVEINGDDRRLRVSLKNLLPKPFDEFMKKYKVGDIAEGT 380

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKL 685
           +  + +FGAFV      +GL+H    S +R  +  D+ K GD V VK++  D+   KI L
Sbjct: 381 ITTITNFGAFVKI-ENVEGLLHNEDASWDRNVRCKDLFKIGDNVKVKIIKIDEENQKISL 439

Query: 686 SMKVVDQNT 694
           + K ++++ 
Sbjct: 440 NHKDLEESP 448



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 19/194 (9%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSE------SRLQLGEFTPRVEIMAIPPDQIRN 565
           +    +   ++       +ILN      ++      +   +  F PR +           
Sbjct: 99  LRREKIKEFIENFDENAENILNVKVISFNKGGFVCINSDNVEFFMPRSQAGFKD------ 152

Query: 566 VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
               G   I    +    K+N ++   +        E    ++ + S   +   +++ +G
Sbjct: 153 ----GKSAINKTYKVKIIKINKEEQSIIVSRKKLFDEERKVKKEVISK-LLENTDQVIEG 207

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
            V K+  +G FV   G  DGLVH S++S +     + + KEGD V VK++++D+  + + 
Sbjct: 208 IVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPNSLYKEGDKVPVKVINYDNEKRHLS 266

Query: 685 LSMKVVDQNTGKPI 698
           LS+K    +    I
Sbjct: 267 LSIKAALPDPWDEI 280



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D+   KI+ +     E+                I  G++  + DFG 
Sbjct: 418 KIGDNVKVKIIKIDEENQKISLNHKDLEESPICKY---AQKHASGDIVTGKIRDIKDFGI 474

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV      D L+    L +      S  +K GD +   +   D++  +I+LS++ + +  
Sbjct: 475 FVELGENVDALIRKEDLGS---IDPS-TLKIGDEIEAAVAFIDEKKNRIRLSVRRLAKQK 530

Query: 695 GKPIV 699
            + ++
Sbjct: 531 EREVL 535


>gi|222479439|ref|YP_002565676.1| translation initiation factor 2, alpha subunit [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452341|gb|ACM56606.1| translation initiation factor 2, alpha subunit [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 266

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++  G V ++ DFG FV      D  GL HIS++++  +    D V+EG TV  K+
Sbjct: 7   PEPGELVVGDVDEIADFGVFVDLDEYEDKRGLCHISEVASGWIKNVRDHVREGQTVVAKV 66

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKP 697
           LD D+   +I LS+K V+++  K 
Sbjct: 67  LDVDESANQIDLSIKDVNEHQRKD 90


>gi|332878619|ref|ZP_08446339.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683520|gb|EGJ56397.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 707

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 575 RGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           + I ++ G     ++  +          A    A +      D   V  +  G V  +  
Sbjct: 590 KYITDEVGILYLKDVLKELEKPGLDPRQAAKAFAFDPNVKTFDDVRVGMVLPGIVNNITA 649

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           FG FV       GLVHISQL    V+  ++VVK    V VK+ + D+ R +I LSM
Sbjct: 650 FGCFVDIGLKESGLVHISQLKDGYVSDVNEVVKLHQQVEVKVTEVDEARHRISLSM 705


>gi|313621003|gb|EFR92132.1| general stress protein 13 [Listeria innocua FSL S4-378]
          Length = 69

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++  GD V VK+++ 
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNI 63

Query: 678 DDRGKI 683
            D GKI
Sbjct: 64  GDDGKI 69


>gi|189467749|ref|ZP_03016534.1| hypothetical protein BACINT_04141 [Bacteroides intestinalis DSM
           17393]
 gi|224538667|ref|ZP_03679206.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|189436013|gb|EDV04998.1| hypothetical protein BACINT_04141 [Bacteroides intestinalis DSM
           17393]
 gi|224519711|gb|EEF88816.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 598

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            +++   +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALSAELKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|29349753|ref|NP_813256.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341663|gb|AAO79450.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482]
          Length = 599

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GFIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIATGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|116511133|ref|YP_808349.1| transcriptional accessory protein [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106787|gb|ABJ71927.1| Transcriptional accessory protein [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 713

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
                     ++++ +   +   E   ++  + IP  ++   +G+G + +  I+      
Sbjct: 555 PESYKVTEQLLTEIAAGPAVSNEELLTKLSSVNIP--EMAEKLGLGQETLTDIINDLQ-- 610

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
                    K         +A             ++++  +G V  V+DFGAF+      
Sbjct: 611 ---------KPGRDLRESFDAPILRQDVLSAGDLQIDQQLEGVVRNVVDFGAFIDIGIKN 661

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           DGL H+S LS   V   SDVV  G  V V +   D  RGKI L++
Sbjct: 662 DGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTL 706


>gi|86133043|ref|ZP_01051625.1| 30S ribosomal protein S1 [Polaribacter sp. MED152]
 gi|85819906|gb|EAQ41053.1| 30S ribosomal protein S1 [Polaribacter sp. MED152]
          Length = 609

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +      ++  + I   
Sbjct: 182 QIDVKPIRDY----DQYVEKTMEFKVVKINHEFKNVVVSHKALIEADIELQK--KEIIGQ 235

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   ++VV+    + V +LD
Sbjct: 236 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEVVELDQKLNVVILD 294

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K +  +  + +
Sbjct: 295 FDDNKSRIQLGLKQLTAHPWEAL 317



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGLV+IS LS  +++   SD V  
Sbjct: 399 DPWTDITTKYPVGSTHTGTVRNYTNFGVFVELEEGIDGLVYISDLSWTKKIKHPSDFVTV 458

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  K+ L  K    N  
Sbjct: 459 GQKLDVQVLELDVENRKLNLGHKQTQDNPW 488



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
               ++ D  +V     G+VV + D+GAFV      +GL+H+S++S    +    D VK 
Sbjct: 312 HPWEALDDSLKVGDKVTGEVVVLADYGAFVEVEQGVEGLIHVSEMSWSTHLRSAQDFVKV 371

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V  ++L  D +  K+ L +K +  +    I
Sbjct: 372 GDKVEAQVLTLDREDRKMSLGIKQLHPDPWTDI 404



 Score = 37.6 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
              +++   E ++        + + +G VV++ D  A +      +G++ +++    +  
Sbjct: 50  DEEKLKEFEEALKGTIGFVNESDVIEGTVVRITDRDAIIDINSKSEGVISLNEFRYNQN- 108

Query: 659 KTSDVVKEGDTVWVKLLDF-DDRGKIKLSMK 688
                + EGDTV V +    D  G++ LS K
Sbjct: 109 -----LAEGDTVEVLVDKREDSSGQLVLSHK 134


>gi|53713095|ref|YP_099087.1| RNA-binding protein [Bacteroides fragilis YCH46]
 gi|52215960|dbj|BAD48553.1| putative RNA binding protein with S1 RNA-binding domain
           [Bacteroides fragilis YCH46]
          Length = 707

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
               G V  + +FGAFV      +GLVH+SQL+   +   ++VV     V VK+L  D +
Sbjct: 637 MTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQHVTVKVLSIDLE 696

Query: 680 RGKIKLSMKV 689
           R +I+L+MK 
Sbjct: 697 RKRIQLTMKE 706


>gi|268679707|ref|YP_003304138.1| Tex-like protein protein-like protein [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617738|gb|ACZ12103.1| Tex-like protein protein-like protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 704

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-D 679
           I  G V  + DFGAFV      DGL+HISQ+S +R+A   +V+     +  +++L+ D +
Sbjct: 634 IVSGVVRNIADFGAFVDIGLKNDGLIHISQMSEKRIAHPLEVLSINQQLTRIRVLEVDKE 693

Query: 680 RGKIKLSMKVV 690
           +GK+ LS+K +
Sbjct: 694 KGKVSLSLKEI 704


>gi|253569882|ref|ZP_04847291.1| 30S ribosomal protein S1 [Bacteroides sp. 1_1_6]
 gi|251840263|gb|EES68345.1| 30S ribosomal protein S1 [Bacteroides sp. 1_1_6]
          Length = 599

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GFIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIATGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|257125153|ref|YP_003163267.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049092|gb|ACV38276.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
          Length = 721

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN- 620
           ++ ++      V + + +    K+  ++D   + A      +   R   R   + P +  
Sbjct: 580 KVEDLKADLDAVRQKLQKIDLEKIIKENDFGRETAKDVYEALLKDRRDPRDEFEKPLLRS 639

Query: 621 -----------KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                       + +G V  V  FGAFV      D L+HIS+++ + V+  +  +  G  
Sbjct: 640 DILNMDDLTEGMVLEGTVRNVAKFGAFVDIGLKNDALIHISEIAEKFVSDATKELSVGQI 699

Query: 670 VWVKLLDFD-DRGKIKLSMKVV 690
           + VK+L  D +RG++ L+ K +
Sbjct: 700 IKVKILSLDKERGRVGLTRKGI 721


>gi|153807671|ref|ZP_01960339.1| hypothetical protein BACCAC_01953 [Bacteroides caccae ATCC 43185]
 gi|149130033|gb|EDM21245.1| hypothetical protein BACCAC_01953 [Bacteroides caccae ATCC 43185]
          Length = 598

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 433 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDPDLKVGDKVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAAGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K + Q+  + I
Sbjct: 366 LGIKQLKQDPWETI 379


>gi|309798588|ref|ZP_07692863.1| S1-type RNA-binding domain protein [Streptococcus infantis SK1302]
 gi|308117824|gb|EFO55225.1| S1-type RNA-binding domain protein [Streptococcus infantis SK1302]
          Length = 113

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GL+HIS++ T  +    DV+K G+ V V+++D
Sbjct: 1   MKIGDKLTGRITGIQSYGAFVELETGITGLIHISEIRTGFIENIYDVLKIGEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEYTGKASLSIRTLEEE 78


>gi|125623169|ref|YP_001031652.1| transcription accessory protein TEX [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491977|emb|CAL96904.1| transcription accessory protein TEX [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069916|gb|ADJ59316.1| transcription accessory protein TEX [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 713

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 15/165 (9%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
                     ++++ +   +   E   ++  + IP  ++   +G+G + +  I+      
Sbjct: 555 PESYKVTEQLLAEIAAGPAVSNEELLTKLSSVNIP--EMAEKLGLGQETLTDIINDLKKP 612

Query: 585 -VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
             ++ D     I    +                 ++ +  +G V  V+DFGAF+      
Sbjct: 613 GRDLRDSFDAPILRQDVLSAG-----------DLQIGQQLEGVVRNVVDFGAFIDIGIKN 661

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           DGL H+S LS   V   SDVV  G  V V +   D  RGKI L++
Sbjct: 662 DGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTL 706


>gi|312897937|ref|ZP_07757350.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
 gi|310620971|gb|EFQ04518.1| S1 RNA binding domain protein [Megasphaera micronuciformis F0359]
          Length = 724

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +V  + KG V  V+DFGAFV F     GL+H S+LST       D++  GD V  +++
Sbjct: 644 ELQVGTVVKGTVQNVVDFGAFVDFGLKTAGLIHRSELSTRPFKHPLDILHTGDIVEAQII 703

Query: 676 DFD-DRGKIKLSMKVVDQ 692
             +  + +I LS+K +++
Sbjct: 704 GVEAKKNRIALSIKALEK 721


>gi|269798441|ref|YP_003312341.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
 gi|269095070|gb|ACZ25061.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
          Length = 770

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 27/154 (17%)

Query: 564 RNVIGMGGKVIRGIVEQTGAK--------VNIDD-----DGTVKIASSSLAEIEAAREMI 610
             +IG  G  ++ + +++  +        V+ D      D  V      LA +       
Sbjct: 567 ERIIGELGFTLKDLQDKSQLEALQVKLPLVDADKMAAKLDAGVPTVRDILAALAKPGRDP 626

Query: 611 RSITDVP------------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
           R     P            +V  + KG V  V+DFGAFV F    +GL+H S+L   R  
Sbjct: 627 REDLPAPLTRKHVVSLEDIKVGTVVKGTVHNVVDFGAFVDFGLKTNGLLHRSELCNSR-Q 685

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             SDV+  GD +  +++  D  R +I LS+K + 
Sbjct: 686 HPSDVLAVGDIIEAQIISVDVKRNRIGLSVKALQ 719


>gi|237743636|ref|ZP_04574117.1| LytB protein [Fusobacterium sp. 7_1]
 gi|229432667|gb|EEO42879.1| LytB protein [Fusobacterium sp. 7_1]
          Length = 827

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           PD    V+G   +VI         KV+  D    KI  S      A +E   +     EV
Sbjct: 425 PDNEEKVVGKKIQVIVK-----DIKVDPKDKRNKKITYSVKDIKIAEQEKEFAA---LEV 476

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +I    V +V+DFG  V     + G +HIS++S +R+ K SD+ K GD +   ++  D+
Sbjct: 477 GQIVDCVVTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDIYKVGDHIKAVIVSLDE 535

Query: 680 RGK-IKLSMKVVDQNTG 695
             + +KLS+K ++++  
Sbjct: 536 AKRNVKLSIKKLEEDPW 552



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ ++  +G  +   IV    AK N      VK++   L E   A     ++ +  +VN
Sbjct: 514 DKLSDIYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVN 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S  +     SD VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHP 622

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  K+KL +K +  N  +
Sbjct: 623 EDRKLKLGIKQLVANPWE 640



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +     + +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNNKKIKGSLKALR---KSPWEHVLEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D  KEGD V  ++++ + D  KIKLS
Sbjct: 749 FIELIKGIDGFIPTQFASKEFIKNIRDKFKEGDIVKAQVVEVNKDTQKIKLS 800



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTG--AKVNIDD----DGTVKIASSSLAEIEAARE-- 608
            + P      I  G + +  I + +    KVN+ D       VK+  + L   +   +  
Sbjct: 571 KVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHPEDRKLKLG 630

Query: 609 -------MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                     +      V  + KG++V+V  FG FV      D  VH S  +        
Sbjct: 631 IKQLVANPWETAEKDFAVGTVIKGKIVEVKPFGIFVEIADGIDAFVHSSDYNWIGEETPK 690

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              + G+ V +K+ + D +  KIK S+K + ++  +
Sbjct: 691 --FEIGNEVELKITELDLNNKKIKGSLKALRKSPWE 724


>gi|330684224|gb|EGG95966.1| S1 RNA binding domain protein [Staphylococcus epidermidis VCU121]
          Length = 77

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  D+ GK+
Sbjct: 12  KVRVTGIQPYGAFVEAPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDEEGKL 71

Query: 684 KLSMKV 689
            LS+K 
Sbjct: 72  NLSLKD 77


>gi|160892252|ref|ZP_02073255.1| hypothetical protein BACUNI_04716 [Bacteroides uniformis ATCC 8492]
 gi|270296131|ref|ZP_06202331.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480708|ref|ZP_07939794.1| ribosomal protein S1 [Bacteroides sp. 4_1_36]
 gi|156858730|gb|EDO52161.1| hypothetical protein BACUNI_04716 [Bacteroides uniformis ATCC 8492]
 gi|270273535|gb|EFA19397.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903049|gb|EFV24917.1| ribosomal protein S1 [Bacteroides sp. 4_1_36]
          Length = 598

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVKPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIIGK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDEKKRIALGLKQLTPHPW 289



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I +   +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 374 DPWETIEEKYPIGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQI 433

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V++L+ D +  ++ L  K +++N  
Sbjct: 434 GADIDVQVLEIDKENRRLSLGHKQLEENPW 463



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 26/254 (10%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAG-----------TDSGITAMQMDMKIGGIS 513
           G +K      ++ D+ G E  L      V              +  +  +  + K   +S
Sbjct: 132 GYIKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVFVGKTMEFKVVKINQEFKNVVVS 191

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              ++ A  + ++  +    E  +VL  +   +  +      + I    +  +I +    
Sbjct: 192 HKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSY-----GVFIDLGGVDGLIHITDLS 246

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKGQ 626
             G V      V +D    V I      +   A            ++    +V    KG+
Sbjct: 247 -WGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPWDALDANLKVGDHVKGK 305

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           VV + D+GAF+      +GL+H+S++S  + +    D +K GD V   +L  D +  K+ 
Sbjct: 306 VVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMS 365

Query: 685 LSMKVVDQNTGKPI 698
           L +K +  +  + I
Sbjct: 366 LGIKQLKSDPWETI 379


>gi|172079513|ref|ZP_02932128.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|172043456|gb|EDT51502.1| S1 RNA binding domain protein [Streptococcus pneumoniae CDC1873-00]
          Length = 790

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 714 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 773

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 774 TEREKVNLSLLAPNET 789


>gi|39996302|ref|NP_952253.1| 30S ribosomal protein S1 [Geobacter sulfurreducens PCA]
 gi|39983182|gb|AAR34576.1| ribosomal protein S1 [Geobacter sulfurreducens PCA]
 gi|298505312|gb|ADI84035.1| RNA-binding S1 domain protein [Geobacter sulfurreducens KN400]
          Length = 402

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           + G   + S      E  R+   ++ D  +      G V ++M FGAFV   G  +GL+ 
Sbjct: 173 ERGRNIVLSHRAILEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDI-GGVEGLIP 231

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           IS+    RV +  DV+  G+ V   +   D +  KI LS++ V  +  + I 
Sbjct: 232 ISEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLSLRDVQADPWEGIA 283



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +    I +       + G V ++  FGAFV      DGL+HIS+L + +R+A   +V+KE
Sbjct: 277 DPWEGIAERFPEGSYHTGTVARLAPFGAFVTLAPGIDGLIHISKLGAGKRIAHPREVLKE 336

Query: 667 GDTVWVKLLDFDDRGKIKLSM 687
           GD V V +   D   + +LS+
Sbjct: 337 GDAVEVTVEGVDRESR-RLSL 356


>gi|227510734|ref|ZP_03940783.1| S1 domain RNA-binding protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189855|gb|EEI69922.1| S1 domain RNA-binding protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 722

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  +++ ++          I E+T   +    +   +     +      ++++      P
Sbjct: 589 IVAEKLVHLDLPVVAQTIDIGEETLRDIVKGIETPGRDLRDDMPTPLLKKDVLTMEDLKP 648

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +    +G V  V+DFGAFV     +DGLVHIS++S   V   S +V  GD V V +   
Sbjct: 649 GMK--LQGTVRNVVDFGAFVDIGVKQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSV 706

Query: 678 D-DRGKIKLSM 687
           D DR +I+LSM
Sbjct: 707 DVDRHRIQLSM 717


>gi|222099846|ref|YP_002534414.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572236|gb|ACM23048.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
          Length = 120

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V +  KG+V K++ +GAFV   G   G +HIS++S + V +  D +KEG  +  K++ 
Sbjct: 1   MKVGEFVKGKVSKIVRYGAFVDIEGGERGFIHISKISKDYVKRIEDYLKEGQEISAKVIG 60

Query: 677 FDDRGKIKLSMKVVDQNT 694
               G  +LS+K V +NT
Sbjct: 61  KARNGGWELSLKDVSENT 78


>gi|256028050|ref|ZP_05441884.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium sp. D11]
 gi|289765993|ref|ZP_06525371.1| LytB protein [Fusobacterium sp. D11]
 gi|289717548|gb|EFD81560.1| LytB protein [Fusobacterium sp. D11]
          Length = 827

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           PD    V+G   +VI         KV+  D    KI  S      A +E   +     EV
Sbjct: 425 PDNEEKVVGKKIQVIVK-----DIKVDPKDKRNKKITYSVKDIKIAEQEKEFAA---LEV 476

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +I    V +V+DFG  V     + G +HIS++S +R+ K SD+ K GD +   ++  D+
Sbjct: 477 GQIVDCVVTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDIYKVGDHIKAVIVSLDE 535

Query: 680 RGK-IKLSMKVVDQNTG 695
             + +KLS+K ++++  
Sbjct: 536 AKRNVKLSIKKLEEDPW 552



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ ++  +G  +   IV    AK N      VK++   L E   A     ++    +VN
Sbjct: 514 DKLSDIYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVASEFKVN 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S  +     SD VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHP 622

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  K+KL +K +  N  +
Sbjct: 623 EDRKLKLGIKQLVANPWE 640



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +     + +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKIIELDLNNKKIKGSLKALR---KSPWEHVLEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D  KEGD V  ++++ + D  KIKLS
Sbjct: 749 FIELIKGIDGFIPTQFASKEFIKNIRDKFKEGDIVKAQVVEVNKDTQKIKLS 800



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 18/156 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTG--AKVNIDD----DGTVKIASSSLAEIEAARE-- 608
            + P      I  G + +  I + +    KVN+ D       VK+  + L   +   +  
Sbjct: 571 KVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHPEDRKLKLG 630

Query: 609 -------MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                     +      V  + KG++V+V  FG FV      D  VH S  +        
Sbjct: 631 IKQLVANPWETAEKDFAVGTVIKGKIVEVKPFGIFVEIADGIDAFVHSSDYNWIGEETPK 690

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              + G+ V +K+++ D +  KIK S+K + ++  +
Sbjct: 691 --FEIGNEVELKIIELDLNNKKIKGSLKALRKSPWE 724


>gi|281490827|ref|YP_003352807.1| transcription accessory protein (S1 RNA binding domain)
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374585|gb|ADA64105.1| Transcription accessory protein (S1 RNA binding domain)
           [Lactococcus lactis subsp. lactis KF147]
          Length = 712

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
            +    +L E+S     S  +L     ++  + IP  ++   +G+G + +  I+      
Sbjct: 558 YKVTEQLLAEISADKPVSNEELLT---KLSSVNIP--EMAEKLGLGQETLTDIINDLQKP 612

Query: 585 -VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
             ++ D     I    +                 ++ +  +G V  V+DFGAF+      
Sbjct: 613 GRDLRDSFDAPILRQDVLSAG-----------DLQIGQQLEGVVRNVVDFGAFIDIGIKN 661

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           DGL H+S LS   V   SDVV  G  V V +   D  RGKI L++
Sbjct: 662 DGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTL 706


>gi|239636520|ref|ZP_04677522.1| general stress protein 13 [Staphylococcus warneri L37603]
 gi|239597875|gb|EEQ80370.1| general stress protein 13 [Staphylococcus warneri L37603]
          Length = 126

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683
           K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K+L  D+ GK+
Sbjct: 12  KVRVTGIQPYGAFVEAPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKAKILSIDEEGKL 71

Query: 684 KLSMKVVD 691
            LS+K  D
Sbjct: 72  NLSLKDND 79


>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 171

 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 20/166 (12%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
           ++     R DGR    +R  +++ G L R  GS+    G +  +  V  G  +      +
Sbjct: 1   MVATNLQRQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAV-YGPGQA----RN 55

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
                 +   +   F           G  + +E  + ++ R+   PV+   +     + I
Sbjct: 56  WRAENTDKATLDVCFKL-------EKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISI 108

Query: 426 VSEITESDGSSS--------MATVCGSSLALMDAGVPISKPVAGIA 463
           V ++ E +GS S           +   SLALMDAGVP+   V   +
Sbjct: 109 VVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATS 154



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 27/151 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYA 69
           RP   E G + R +DG+   ++G + VLA V      +    +  D   L V ++     
Sbjct: 18  RPFASEQGALFR-ADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKL---- 72

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESS-- 125
                      +   T  E    ++I ++  P+       +    +++ V++ +   S  
Sbjct: 73  ----------EKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFP 122

Query: 126 ----PHVVSMVAASAALMLSGLPFEGPVVGA 152
                  +++ A S ALM +G+P    V   
Sbjct: 123 LFLIIAALAINAVSLALMDAGVPMLSVVTAT 153


>gi|15672267|ref|NP_266441.1| hypothetical protein L84502 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723148|gb|AAK04383.1|AE006266_2 hypothetical protein L84502 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405864|gb|ADZ62935.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
           CV56]
          Length = 712

 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK 584
            +    +L E+S     S  +L     ++  + IP  ++   +G+G + +  I+      
Sbjct: 558 YKVTEQLLAEISADKPVSNEELLT---KLSSVNIP--EMAEKLGLGQETLTDIINDLQKP 612

Query: 585 -VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
             ++ D     I    +                 ++ +  +G V  V+DFGAF+      
Sbjct: 613 GRDLRDSFDAPILRQDVLSAG-----------DLQIGQQLEGVVRNVVDFGAFIDIGIKN 661

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           DGL H+S LS   V   SDVV  G  V V +   D  RGKI L++
Sbjct: 662 DGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTL 706


>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
          Length = 307

 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            +   R  E  R I  + G++ +  GS+     +T+ I  V  G R   +        + 
Sbjct: 50  KKRTNRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVH-GPRASPKT----ELFES 104

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             F     F   A          S +E       R++I   +         + +   +  
Sbjct: 105 AKFSCELKFASFARPGERIDYMESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLN 164

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            DG   +A +  +S+AL DAGV +   V+  +   +++
Sbjct: 165 DDGGVLVAAITAASMALADAGVEMYDMVSACSSICIRN 202



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 90/250 (36%), Gaps = 40/250 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + ++TG ++ Q+ G+       T V+ +V   R+    + F     + + +  +  + 
Sbjct: 61  RQIFMKTGVVS-QASGSAYIEIENTKVICSVHGPRASPKTELFESAKFSCELKFASFARP 119

Query: 74  PGGYLRRES-RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
                  ES +  +  I + + I  +IR    K  K    V + V+  D      V ++ 
Sbjct: 120 GERIDYMESAKEKDLSINLRQSIIGAIR--LEKYPKTVIDVYVMVLNDDGGVL--VAAIT 175

Query: 133 AASAALMLSGLPFEGPVVGAQVDYINGQYV-------------------------LNPRL 167
           AAS AL  +G+     V       I  Q +                         L+P L
Sbjct: 176 AASMALADAGVEMYDMVSACSSICIRNQSISNGSNGSGSGNGSSGAAPKVQSSILLDPTL 235

Query: 168 DEDQG--SLDLFVSGTQDAVLMVEL--EANQLSEDVVLDAIIFGHNECKPV-----IEAI 218
            E++   SL   V     ++  +    +  +LS +  +D I    + C  +        I
Sbjct: 236 QEEESKDSLGCVVVAKMPSLNEITQIIQTGELSYNNTIDGIDLCIDGCDKIYSIMKQNLI 295

Query: 219 SKLAKMCAKE 228
           S L K  +K+
Sbjct: 296 SSLEKQVSKK 305


>gi|325119608|emb|CBZ55161.1| hypothetical protein NCLIV_055860 [Neospora caninum Liverpool]
          Length = 1205

 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL--STERVAK 659
            A               IY+G V KV++FG FV      G R GL+HI+ +  +  R  +
Sbjct: 209 KAPAHYYGRKGPMIRYAIYEGVVDKVVEFGCFVRLEFDEGTRQGLLHIADMVKTDGRPVQ 268

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             DVV     V VK+L      KI LSM+ VDQ TG+ +
Sbjct: 269 PQDVVHRNMPVKVKILGIAGS-KISLSMREVDQETGEDL 306


>gi|229542549|ref|ZP_04431609.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
 gi|229326969|gb|EEN92644.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
          Length = 725

 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           ++   +G+G   ++ I E           G           ++     +  +    E+  
Sbjct: 605 EMAKTLGIGELTLQDIFEALKKP------GRDPRDELPKPLLKKDIMKLEDLKPGMEMQ- 657

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
              G V  V+DFGAFV      DGLVHIS+LS   V    D+V  GD V V +   D  +
Sbjct: 658 ---GTVRNVVDFGAFVDVGVKEDGLVHISKLSKGFVKHPLDIVSVGDIVTVWVEKVDVQK 714

Query: 681 GKIKLSM 687
           G++ L+M
Sbjct: 715 GRLSLTM 721


>gi|328949378|ref|YP_004366715.1| RNA binding S1 domain protein [Treponema succinifaciens DSM 2489]
 gi|328449702|gb|AEB15418.1| RNA binding S1 domain protein [Treponema succinifaciens DSM 2489]
          Length = 365

 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 72/186 (38%), Gaps = 11/186 (5%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
           ++++  A +       H+  E+             F P  ++      +    +G   + 
Sbjct: 80  KSVLENAFKNGIPVEGHVTKEIKGGFEVMIGTSRAFCPYSQMGYRQKKEPAEYVG---EH 136

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +   +++        +DG   + S+     E A   +  ++          G+V  +  +
Sbjct: 137 LAFKIQEFK------NDGKNIVLSNRAILEEQANAELDQLSKKYTEGMTVNGKVKSIESY 190

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GAF+   G    L+ +S++S  R+   SDV+K G  +  K++  D    K+ LS K ++ 
Sbjct: 191 GAFIDLNGF-QALLPVSEISHARIKNVSDVLKVGQEITAKIIKADWQHEKVSLSTKELEA 249

Query: 693 NTGKPI 698
           +    +
Sbjct: 250 DPWDNV 255



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
                P  EI       + +V+ +G ++   I++                  S   +   
Sbjct: 199 FQALLPVSEISHARIKNVSDVLKVGQEITAKIIKADWQ----------HEKVSLSTKELE 248

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A        D P   KI +G + +V DFG FV+     DGLVHIS+L+ ER      + K
Sbjct: 249 ADPWDNVKKDFPAGTKI-EGTISRVTDFGIFVNIASGIDGLVHISKLNVERNTNLKKIYK 307

Query: 666 EGDTVWVKLLDFD-DRGKIKL 685
            G+   V +   D +  +I L
Sbjct: 308 PGEKFPVIVEKVDSEEKRISL 328


>gi|269958579|ref|YP_003328366.1| 30S ribosomal protein S1 [Anaplasma centrale str. Israel]
 gi|269848408|gb|ACZ49052.1| 30S ribosomal protein S1 [Anaplasma centrale str. Israel]
          Length = 560

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 102/274 (37%), Gaps = 19/274 (6%)

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED--HLGHMD 490
           D       +   ++  MD G       AG+    V    +F +  D   D        + 
Sbjct: 47  DRGPKEGEIIEGTVICMDGGYITVD--AGLKSEGVVSLREFELGGDGGQDVAVGSKVKLC 104

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
            +     SG   +  +  I       +  A ++       I   +    +     +  F 
Sbjct: 105 LEKIEGKSGSVVLSREKAIRDELWQRLEKAAEEKTDVEGVIFGSIRCGYTVDVGGVVAFL 164

Query: 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           P      +   Q++++  + GK  +  + +   K      G + ++  ++ E   A    
Sbjct: 165 PASH---VGLRQVKDITPLLGKKQKFRILKMDKK-----QGNIVVSRKAVLEESLADAKD 216

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFC-----GARDGLVHISQLSTERVAKTSDVVK 665
             ++ + E + I +G+V  +  +G F+        G  DGL+HI+ +S  RV+  S V  
Sbjct: 217 SFLSQLEEGS-IIEGKVKSITKYGVFIGIHESPSVGVVDGLLHITDISWSRVSHPSAVFS 275

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            G TV  K++  D +  KI L +K ++++    +
Sbjct: 276 CGQTVRAKIIRIDRENRKISLGVKQLEESPWANV 309



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              ++ +   V+ I+KG V  + D+G FV      +GL+H+S++S  R     +     G
Sbjct: 305 PWANVEERYPVDSIHKGIVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQTFMRG 364

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + V  K+L  D  + ++ LS+K   +N  +
Sbjct: 365 EEVEAKVLSLDAAKNRMSLSIKRCKENPWE 394


>gi|78043962|ref|YP_360744.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996077|gb|ABB14976.1| hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 653

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +     I  + E +K+ KG+V K+M FGAFV   G  +GL+    +S +R  +  + ++ 
Sbjct: 452 KTKKEKIATLKEGSKV-KGKVTKIMPFGAFVDLGGF-EGLLRAQDISWQRNVRPEEHLQV 509

Query: 667 GDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
           G  + V +L+ D    K+ L +K +  +  + I
Sbjct: 510 GQELEVVVLEVDRHNLKVSLGLKQLTPDPWQKI 542



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 47/101 (46%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            +        E  A+ E         +  +I +G+VVKV++    V      +G++ + +
Sbjct: 264 WIIEEVRKKVEQMASMEQALLEIKPVKEGEIVRGKVVKVLEKEVLVDIGTKGEGVIPLEE 323

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           ++  R+ +  D VKEGD   V +L  D+ GKI LS K   +
Sbjct: 324 ITWYRIERARDAVKEGDEFPVLVLKEDEEGKIILSRKKALE 364



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  + I D  +   + +G VVK++  G  +      +G +   +   E         + G
Sbjct: 537 DPWQKIPDELKEGAVLEGTVVKILRHGLILELFPGIEGYLPARETEAE-NEPLMKKYQVG 595

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
             + VK+L       K+ LS K   +   K 
Sbjct: 596 QKMEVKILTLKPLEKKMTLSQKEALREKEKE 626


>gi|293402216|ref|ZP_06646354.1| general stress protein 13 [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304323|gb|EFE45574.1| general stress protein 13 [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 117

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G +  +  +GAFV+     +GL+HIS++S   V      VK    V VK+LD D
Sbjct: 5   VGEVVEGVITGIKPYGAFVYLDNCHNGLIHISEISERFVRDVHTYVKINQRVKVKILDID 64

Query: 679 DRG-KIKLSMKVVDQNTGK 696
           + G   KLS+K V+    +
Sbjct: 65  EDGTHFKLSLKAVEAKKAR 83


>gi|126663873|ref|ZP_01734868.1| 30S ribosomal protein S1 [Flavobacteria bacterium BAL38]
 gi|126624137|gb|EAZ94830.1| 30S ribosomal protein S1 [Flavobacteria bacterium BAL38]
          Length = 588

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +      ++  + I   
Sbjct: 160 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIEVQK--KEIIGQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  R+   S+V++    + V +LD
Sbjct: 214 LEKGQVLEGVVKNITSYGVFIDL-GGVDGLIHITDLSWSRINHPSEVLELDQKLNVVILD 272

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I+L +K ++ +  
Sbjct: 273 FDDEKTRIQLGLKQLNAHPW 292



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S    +    D +K 
Sbjct: 290 HPWDALGAELKVGDKVKGKVVVLADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFMKI 349

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D D  K+ L +K + Q+    I
Sbjct: 350 GDEVEAVVLTLDRDERKMSLGIKQMTQDPWTDI 382



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   + G V    +FG FV      DGLV+IS LS  +++   S+ V 
Sbjct: 376 QDPWTDITAKYPVGSKHTGIVRNFTNFGIFVELEEGIDGLVYISDLSWTKKIKHPSEFVN 435

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GD + V +L+ D  G+ + L  K    N  
Sbjct: 436 VGDNMDVVVLELDVEGRKLSLGHKQTTANPW 466


>gi|283768906|ref|ZP_06341816.1| general stress protein 13 [Bulleidia extructa W1219]
 gi|283104459|gb|EFC05833.1| general stress protein 13 [Bulleidia extructa W1219]
          Length = 123

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V +I +G+V  +  +GAFV       GL+HIS++S   V      V+ G  V VK+
Sbjct: 1   MEYKVGQIVEGKVTGLQPYGAFVAIDKNLSGLIHISEISDGFVKNIHSFVEVGQVVRVKI 60

Query: 675 LDFDDR-GKIKLSMKVVDQ 692
           +D D++  + KLS+K + +
Sbjct: 61  IDLDEKSNQAKLSLKALQK 79


>gi|242032271|ref|XP_002463530.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
 gi|241917384|gb|EER90528.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
          Length = 366

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVV 664
             + + + ++  IY G V  V  +GAFVH           GLVHIS++S + V    D +
Sbjct: 162 WSTYSSLIKIGDIYDGIVGSVFPYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVQDFL 221

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            EGD V V +++ D  + +I LS++ ++++ 
Sbjct: 222 NEGDAVKVIVVNIDTAKSRIALSIRQLEEDP 252


>gi|305667621|ref|YP_003863908.1| putative 30S ribosomal protein S1 [Maribacter sp. HTCC2170]
 gi|88709671|gb|EAR01904.1| putative 30S ribosomal protein S1 [Maribacter sp. HTCC2170]
          Length = 625

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  + I   
Sbjct: 194 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKKEIISQ 247

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGLVHI+ LS  R+   ++VV+    + V +LD
Sbjct: 248 LEKGQVLEGVVKNITSYGVFIDL-GGVDGLVHITDLSWSRINHPNEVVELDQKLNVVILD 306

Query: 677 FDDRG-KIKLSMKVVDQNTG 695
           FD+   +I+L +K ++++  
Sbjct: 307 FDENKSRIQLGLKQLEKHPW 326



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++++  ++    KG+VV + D+GAF+      +GL+H+S++S    +    D VK
Sbjct: 323 KHPWDALSEDIKIGDKVKGKVVVIADYGAFIEVVEGVEGLIHVSEMSWSTHLRSAQDFVK 382

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D +  K+ L +K +  +    I
Sbjct: 383 VGDEVEAVVLTLDREDRKMSLGIKQLTPDPWTDI 416



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   +KG V    +FG F+      DGL++IS LS  +++   S+ V  
Sbjct: 411 DPWTDITTKYPVGSKHKGIVRNFTNFGVFLELEEGIDGLIYISDLSWTKKIKHPSEFVTV 470

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GDT+ V++L+ D  G+ + L  K   +N  
Sbjct: 471 GDTLEVEVLELDVEGRKLSLGHKQTTENPW 500


>gi|260495755|ref|ZP_05815877.1| ribosomal protein S1 [Fusobacterium sp. 3_1_33]
 gi|260196713|gb|EEW94238.1| ribosomal protein S1 [Fusobacterium sp. 3_1_33]
          Length = 827

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           PD    V+G   +VI         KV+  D    KI  S      A +E   +     EV
Sbjct: 425 PDNEEKVVGKKIQVIVK-----DIKVDSKDKRNKKITYSVKDIKIAEQEKEFAA---LEV 476

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +I    V +V+DFG  V     + G +HIS++S +R+ K SD+ K GD +   ++  D+
Sbjct: 477 GQIVDCVVTEVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDIYKVGDHIKAVIVSLDE 535

Query: 680 RGK-IKLSMKVVDQNTG 695
             + +KLS+K ++++  
Sbjct: 536 AKRNVKLSIKKLEEDPW 552



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ ++  +G  +   IV    AK N      VK++   L E   A     ++ +  +VN
Sbjct: 514 DKLSDIYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVN 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S  +     SD VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHP 622

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  K+KL +K +  N  +
Sbjct: 623 EDRKLKLGIKQLVANPWE 640



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +     + +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNNKKIKGSLKALR---KSPWEHVLEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D  KEGD V  ++++ + D  KIKLS
Sbjct: 749 FIELIKGIDGFIPTQFASKEFIKNIRDKFKEGDIVKAQVVEVNKDTQKIKLS 800



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTG--AKVNIDD----DGTVKIASSSLAEIEAARE-- 608
            + P      I  G + +  I + +    KVN+ D       VK+  + L   +   +  
Sbjct: 571 KVLPYGAFVEIKPGIEGLVHISDFSWTKKKVNVSDYVKEGEKVKVRITDLHPEDRKLKLG 630

Query: 609 -------MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                     +      V  + KG++V+V  FG FV      D  VH S  +        
Sbjct: 631 IKQLVANPWETAEKDFAVGTVIKGKIVEVKPFGIFVEIADGIDAFVHSSDYNWIGEETPK 690

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              + G+ V +K+ + D +  KIK S+K + ++  +
Sbjct: 691 --FEIGNEVELKITELDLNNKKIKGSLKALRKSPWE 724


>gi|256820854|ref|YP_003142133.1| RNA binding S1 domain-containing protein [Capnocytophaga ochracea
           DSM 7271]
 gi|256582437|gb|ACU93572.1| RNA binding S1 domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 707

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 9/150 (6%)

Query: 547 GEFTPRVEIMAIPPD-QIRNVIGMGGKVIR-GIVEQTGAKV------NIDDDGTVKIASS 598
            E  P ++ MA      +  +IG    +    I +    KV      ++  +        
Sbjct: 556 PEAYPIIKQMAKHTGISVAQLIGNKQAIATIDIQKYKTDKVGELYLKDVLKELEKPGLDP 615

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A +      D   V  I  G V  +  FG FV       GLVHISQL    V+
Sbjct: 616 RTTAKAFAFDPNVKTFDDVRVGMILPGIVNNITAFGCFVDIGVKESGLVHISQLKEGYVS 675

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
             ++VVK    V VK+++ D+ R +I LSM
Sbjct: 676 DVNEVVKLHQQVQVKVIEKDEVRKRISLSM 705


>gi|291276334|ref|YP_003516106.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
 gi|290963528|emb|CBG39359.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198]
          Length = 529

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   + +G+V  + DFGAF++  GA DGL+H      ++  K  D  K+GD
Sbjct: 339 PFAEFAKKYKEGDVVEGRVETLTDFGAFINL-GAIDGLLHNEDAFWDKDKKCKDHFKQGD 397

Query: 669 TVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            + VK++  D +  +I LSM+V++++  
Sbjct: 398 ILKVKIIKIDTKNERISLSMRVLEESPA 425



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R    S   + E+     G V ++  FG FV      +GLVH ++++       +   KE
Sbjct: 165 RNHSESAKKIMEIQSPLDGVVKRITSFGMFVSV-DGVEGLVHYTEITHRGPVNPAKFYKE 223

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           GD V VK + +D ++ ++  S+K + ++  K I+
Sbjct: 224 GDNVQVKAIAYDEEKKRLSYSIKALQEDPWKEII 257


>gi|253731100|ref|ZP_04865265.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725175|gb|EES93904.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  
Sbjct: 631 KSDVLSIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V +   D ++ K+ L+M
Sbjct: 690 GDIVDVWIYSIDKNKDKVSLTM 711


>gi|21283716|ref|NP_646804.1| hypothetical protein MW1987 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486857|ref|YP_044078.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297210117|ref|ZP_06926510.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910480|ref|ZP_07127932.1| YhgF like protein [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205158|dbj|BAB95852.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245300|emb|CAG43775.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296885317|gb|EFH24257.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888322|gb|EFK83513.1| YhgF like protein [Staphylococcus aureus subsp. aureus TCH70]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  
Sbjct: 631 KSDVLSIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V +   D ++ K+ L+M
Sbjct: 690 GDIVDVWIYSIDKNKDKVSLTM 711


>gi|329314749|gb|AEB89162.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  
Sbjct: 631 KSDVLSIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V +   D ++ K+ L+M
Sbjct: 690 GDIVDVWIYSIDKNKDKVSLTM 711


>gi|325566935|ref|ZP_08143713.1| general stress protein 13 [Enterococcus casseliflavus ATCC 12755]
 gi|325159107|gb|EGC71252.1| general stress protein 13 [Enterococcus casseliflavus ATCC 12755]
          Length = 126

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  +  +GAFV       GL+H+S++ +       +V++ G  + V+++D 
Sbjct: 4   QIGNIIEGTVTGIQPYGAFVSLDKETQGLIHVSEIQSGFTKNIHEVLQIGQKIRVQIIDI 63

Query: 678 DD-RGKIKLSMKVVD 691
           D+   KI LS + ++
Sbjct: 64  DEYSQKISLSRRTLE 78


>gi|57650735|ref|YP_186869.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160760|ref|YP_494667.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195963|ref|YP_500775.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151222181|ref|YP_001333003.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161510275|ref|YP_001575934.1| RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|258453226|ref|ZP_05701217.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|262049234|ref|ZP_06022109.1| hypothetical protein SAD30_0445 [Staphylococcus aureus D30]
 gi|262052480|ref|ZP_06024678.1| hypothetical protein SA930_0056 [Staphylococcus aureus 930918-3]
 gi|282923052|ref|ZP_06330737.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|284025099|ref|ZP_06379497.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 132]
 gi|294850548|ref|ZP_06791275.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|304379244|ref|ZP_07361983.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284921|gb|AAW37015.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126734|gb|ABD21248.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203521|gb|ABD31331.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374981|dbj|BAF68241.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369084|gb|ABX30055.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859172|gb|EEV82029.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A5948]
 gi|259159601|gb|EEW44647.1| hypothetical protein SA930_0056 [Staphylococcus aureus 930918-3]
 gi|259162599|gb|EEW47166.1| hypothetical protein SAD30_0445 [Staphylococcus aureus D30]
 gi|269941664|emb|CBI50071.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282593243|gb|EFB98240.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9765]
 gi|294822568|gb|EFG39010.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           A9754]
 gi|302751945|gb|ADL66122.1| transcription accessory protein (S1 RNA binding) [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304342103|gb|EFM08003.1| YhgF like protein [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197005|gb|EFU27347.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140766|gb|EFW32618.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143741|gb|EFW35518.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329724027|gb|EGG60551.1| Tex-like protein N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  
Sbjct: 631 KSDVLSIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V +   D ++ K+ L+M
Sbjct: 690 GDIVDVWIYSIDKNKDKVSLTM 711


>gi|282911630|ref|ZP_06319429.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282324395|gb|EFB54708.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WBG10049]
          Length = 492

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 368 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 421

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 422 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIHSI 476

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 477 DKNKDKVSLTM 487


>gi|282164205|ref|YP_003356590.1| translation initiation factor 2 alpha subunit [Methanocella
           paludicola SANAE]
 gi|282156519|dbj|BAI61607.1| translation initiation factor 2 alpha subunit [Methanocella
           paludicola SANAE]
          Length = 267

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P V ++    V KV+DFGAFV       ++GL+HIS++++  V    D V+EG  +  K+
Sbjct: 6   PNVGELVVCTVTKVVDFGAFVALDEYDNKEGLIHISEVASGWVKYIRDHVREGQKIVCKV 65

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKPIV 699
           LD +  RG I LS K V+++  +  +
Sbjct: 66  LDVNPKRGHIDLSFKDVNEHQRRETI 91


>gi|333031496|ref|ZP_08459557.1| RNA binding S1 domain protein [Bacteroides coprosuis DSM 18011]
 gi|332742093|gb|EGJ72575.1| RNA binding S1 domain protein [Bacteroides coprosuis DSM 18011]
          Length = 597

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 157 QIDVRPIRDYDVFVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KEIISK 210

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   +VV+    + V +LD
Sbjct: 211 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSDPKEVVELDQKLNVVILD 269

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 270 FDDQKKRIALGLKQLTPHPW 289



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               S+ +  +V    KG+VV + D+GAFV      +GL+H+S++S  + +    D +K 
Sbjct: 287 HPWDSLDENLKVGDKVKGKVVVMADYGAFVEIAAGVEGLIHVSEMSWSQHLRSAQDFMKV 346

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  K+ L +K + Q+  + I
Sbjct: 347 GDEVEAVILTLDREERKMSLGIKQLKQDPWETI 379



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGLVHIS LS  +++   S+  +
Sbjct: 373 QDPWETIEEKYPVGSKHVAKVRNFTNFGIFVEIEEGVDGLVHISDLSWTKKIKHPSEFTQ 432

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + + +L+ D +  ++ L  K +++N  
Sbjct: 433 LGADLEIVVLEIDKENRRLSLGHKQLEENPW 463


>gi|283771231|ref|ZP_06344120.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283459436|gb|EFC06529.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|253733103|ref|ZP_04867268.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728936|gb|EES97665.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  + SI D+ E  K+  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  
Sbjct: 631 KSDVLSIEDLQEGMKL-SGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSV 689

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V +   D ++ K+ L+M
Sbjct: 690 GDIVDVWIYSIDKNKDKVSLTM 711


>gi|213422759|ref|ZP_03355805.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 52

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 44/51 (86%)

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
            V+P   +FPYT+R+VSEITES+GSSSMA+VCG+SLALMDAGVPI   VAG
Sbjct: 2   AVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAG 52


>gi|163845717|ref|YP_001633761.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222523422|ref|YP_002567892.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667006|gb|ABY33372.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447301|gb|ACM51567.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 520

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
            +G+V  +  +G FV     RDGLVHIS++S  R+   S+VV+ GDTV V +   +    
Sbjct: 107 LEGKVTSIALYGVFVDIGVGRDGLVHISEMSDRRIETPSEVVQIGDTVKVWVKSIEPEAR 166

Query: 682 KIKLSMKV 689
           +I L+M+ 
Sbjct: 167 RISLTMRD 174



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E+ R       V  + +G +     FGAF      +DGL+H+S+L+  RV K  D VK G
Sbjct: 198 EVDREKLAALRVGDVVEGVITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVG 257

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
           +    K+L+ D +  +I LS++
Sbjct: 258 ERYQFKILEIDGEAARISLSLR 279



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R +        E  +I +G V  +  FGAFV     RDGLVHIS L+  RV K  DVVK 
Sbjct: 280 RALRTQRMQQLETGQILEGTVSGIAPFGAFVDIGVGRDGLVHISALAPHRVEKVEDVVKV 339

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
           GD V VK+L  D +  +I L+M++ ++   
Sbjct: 340 GDKVKVKVLGVDQQSKRISLTMRLEEEQPA 369


>gi|329770405|ref|ZP_08261787.1| hypothetical protein HMPREF0433_01551 [Gemella sanguinis M325]
 gi|328836528|gb|EGF86188.1| hypothetical protein HMPREF0433_01551 [Gemella sanguinis M325]
          Length = 409

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I   IG+G + +  I++     +  + +   K            +  I ++ D+ 
Sbjct: 286 IDKKNIAEKIGVGMETLEDIIKDLKQPLRDERENFSKPLL---------KSDILTLDDLS 336

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
              K+  G V  +  FGAFV     +D ++HIS++S   +    DV+  G  V V ++D 
Sbjct: 337 IGMKL-SGTVRNITQFGAFVDIGLKQDAMIHISKISKNYIKNPLDVLSVGQIVDVYVIDV 395

Query: 678 D-DRGKIKLSM 687
           D DR ++ L+M
Sbjct: 396 DKDRSRVGLAM 406


>gi|326793908|ref|YP_004311728.1| Tex-like protein [Marinomonas mediterranea MMB-1]
 gi|326544672|gb|ADZ89892.1| Tex-like protein [Marinomonas mediterranea MMB-1]
          Length = 721

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNK 621
           I+ +IG     I  I  +   +    +    K   S L+      R + +  T   ++  
Sbjct: 586 IKQIIGNSDH-IARIESEYKERYKEKEYYLFKNVISELSHPFRDPRPVFKYATFSSDIKN 644

Query: 622 I--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           I         +G +  +  FGAFV     +DGL+HIS +S + +     VV+ G TV ++
Sbjct: 645 INDLSINMKLEGVITNITSFGAFVDIGVHQDGLIHISNISNQFIKDPRQVVRVGQTVNIE 704

Query: 674 LLDFD-DRGKIKL 685
           ++D D  R +I L
Sbjct: 705 VIDLDISRRRISL 717


>gi|254526843|ref|ZP_05138895.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538267|gb|EEE40720.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9202]
          Length = 363

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 254 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLS 312

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 313 TKALEPEPG 321


>gi|56417008|ref|YP_154082.1| 30S ribosomal protein S1 [Anaplasma marginale str. St. Maries]
 gi|56388240|gb|AAV86827.1| 30S ribosomal protein S1 [Anaplasma marginale str. St. Maries]
          Length = 559

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A ++       I   +    +     +  F P   +       I  ++G   + 
Sbjct: 127 WQKLEKAAEEKTDVEGVIFGSIRCGYTVDVGGVVAFLPASHVGLRQVKDITPLLGKKQQF 186

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
               +++    +       V   +     +  A++   S     E   I +G+V  +  +
Sbjct: 187 RILKMDKKQGNI------VVSRKAVLEESLADAKDSFLSQ---LEEGSIIEGKVKSITKY 237

Query: 634 GAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++  D +  KI L +
Sbjct: 238 GVFIGIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRAKIIRIDRENRKISLGV 297

Query: 688 KVVDQNTGKPI 698
           K ++++    +
Sbjct: 298 KQLEESPWANV 308



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              ++ +   V+ I+KG V  + D+G FV      +GL+H+S++S  R     +     G
Sbjct: 304 PWANVEERYPVDSIHKGIVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQTFMRG 363

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + V  K+L  D  + ++ LS+K   +N  +
Sbjct: 364 EEVEAKVLSLDAAKNRMSLSIKRCKENPWE 393


>gi|296877020|ref|ZP_06901062.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296431964|gb|EFH17769.1| S1 RNA binding domain protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 121

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV        L+HIS++ +  V+   D++  G+ V+V+++D
Sbjct: 1   MKIGDKLEGTITGIQPYGAFVELESGVTSLIHISEIRSGYVSNIHDILSIGEKVFVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQNTGKPI 698
            D+   K  LS++ +++   + +
Sbjct: 61  VDEYSKKASLSLRTLEETPQRTV 83


>gi|222475376|ref|YP_002563793.1| 30S ribosomal protein S1 (rpsA) [Anaplasma marginale str. Florida]
 gi|255003360|ref|ZP_05278324.1| 30S ribosomal protein S1 [Anaplasma marginale str. Puerto Rico]
 gi|222419514|gb|ACM49537.1| 30S ribosomal protein S1 (rpsA) [Anaplasma marginale str. Florida]
          Length = 559

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +  A ++       I   +    +     +  F P   +       I  ++G   + 
Sbjct: 127 WQKLEKAAEEKTDVEGVIFGSIRCGYTVDVGGVVAFLPASHVGLRQVKDITPLLGKKQQF 186

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
               +++    +       V   +     +  A++   S     E   I +G+V  +  +
Sbjct: 187 RILKMDKKQGNI------VVSRKAVLEESLADAKDSFLSQ---LEEGSIIEGKVKSITKY 237

Query: 634 GAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           G F+        G  DGL+HI+ +S  RV+  S V   G TV  K++  D +  KI L +
Sbjct: 238 GVFIGIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRAKIIRIDRENRKISLGV 297

Query: 688 KVVDQNTGKPI 698
           K ++++    +
Sbjct: 298 KQLEESPWANV 308



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
              ++ +   V+ I+KG V  + D+G FV      +GL+H+S++S  R     +     G
Sbjct: 304 PWANVEERYPVDSIHKGIVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQTFMRG 363

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + V  K+L  D  + ++ LS+K   +N  +
Sbjct: 364 EEVEAKVLSLDAAKNRMSLSIKRCKENPWE 393


>gi|11498138|ref|NP_069363.1| translation initiation factor IF-2 subunit alpha [Archaeoglobus
           fulgidus DSM 4304]
 gi|3122240|sp|O29723|IF2A_ARCFU RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|2650097|gb|AAB90710.1| translation initiation factor eIF-2, subunit alpha (eif2A)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 267

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTS 661
              + +I   +  P   +I  G V +V+DFGAFV       R+G+VHIS++++  +    
Sbjct: 1   MKEKRLIIKRSGYPSKGEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIR 60

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           + VK+G  V  K+LD +  RG I LS+K V++   + 
Sbjct: 61  EHVKKGQKVICKVLDVNPKRGHIDLSIKDVNERQRRE 97


>gi|88803478|ref|ZP_01119004.1| 30S ribosomal protein S1 [Polaribacter irgensii 23-P]
 gi|88781044|gb|EAR12223.1| 30S ribosomal protein S1 [Polaribacter irgensii 23-P]
          Length = 607

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +      ++  + I   
Sbjct: 179 QIDVKPIRDY----DQYVEKTMEFKVVKINHEFKNVVVSHKALIEADIELQK--KEIIGQ 232

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   ++VV+    + V +LD
Sbjct: 233 LEKGQVLEGIVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEVVELDQKLNVVILD 291

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K +  +  + +
Sbjct: 292 FDDNKSRIQLGLKQLSAHPWEAL 314



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
               ++ D  +V     G+VV + D+GAFV      +GL+H+S++S    +    D VK 
Sbjct: 309 HPWEALNDTLKVGDKVTGEVVVIADYGAFVEVEQGVEGLIHVSEMSWSTHLRSAQDFVKV 368

Query: 667 GDTVWVKL--LDFDDRGKIKLSMKVVDQNTGKPI 698
           GD V  ++  LD DDR K+ L +K +  +    I
Sbjct: 369 GDKVEAQVLTLDRDDR-KMSLGIKQLHPDPWTDI 401



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGLV+IS LS  +++   SD V  
Sbjct: 396 DPWTDITTKYPVGSTHTGTVRNYTNFGVFVELEEGIDGLVYISDLSWTKKIKHPSDFVTV 455

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V++L+ D +  K+ L  K    N  
Sbjct: 456 GDKLEVQVLELDVENRKLNLGHKQTQDNPW 485


>gi|157412674|ref|YP_001483540.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
 gi|157387249|gb|ABV49954.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
          Length = 363

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 254 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLS 312

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 313 TKALEPEPG 321


>gi|321437419|gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group]
          Length = 415

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE---IEAAREMIRSITDVPEVNKIYKGQ 626
           G      I  ++ A+  ID +  +K       +   + + R+ +        +  +  G 
Sbjct: 213 GFVPFSQISAKSTAEELIDKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVLGT 272

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  +  +GAFV   G  +GL+H+SQ+S +RV+  S V++ GDT+ V +L  D +RG++ L
Sbjct: 273 VQSLKPYGAFVDI-GGINGLLHVSQISHDRVSDISTVLQPGDTLKVMILSHDRERGRVSL 331

Query: 686 SMKVVDQNTG 695
           S K ++   G
Sbjct: 332 STKKLEPTPG 341


>gi|148926578|ref|ZP_01810260.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845272|gb|EDK22366.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 517

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 112 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 171

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 172 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 230

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 231 IKAALPDPWSEI 242



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 410 PVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 465

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 466 DIEAAIVFIDEKKNRIRLSVKNL 488



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 222 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 281

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 282 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 341

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLDFDDRGKIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +G       +    +  KI 
Sbjct: 342 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDKENQKIS 400

Query: 685 LSMKVV 690
           LS K +
Sbjct: 401 LSTKEL 406


>gi|73663129|ref|YP_301910.1| S1 RNA-binding domain-containing protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495644|dbj|BAE18965.1| putative S1 RNA binding domain protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 126

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  K +V  +  +GAFV      +GL+HIS++  + V      + EG  V  K++  
Sbjct: 6   KVGQHVKVRVTGIQPYGAFVETPDNAEGLIHISEIMDDYVHNLKKFLSEGQIVRAKVISI 65

Query: 678 DDRGKIKLSMKVVD 691
           DD GK+ LS+K  D
Sbjct: 66  DDEGKLNLSLKDND 79


>gi|47207907|emb|CAF89868.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1310

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 17/93 (18%)

Query: 622 IYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDF 677
           IY G+V  +M FG FV   G R   +GLVH+S+L  E RVA  +DVV +G  V VK+L  
Sbjct: 234 IYSGKVCSIMQFGCFVQLEGLRKRWEGLVHVSELRKEGRVADVADVVTKGQKVQVKVLSV 293

Query: 678 DDRGKIKLSMKV------------VDQNTGKPI 698
               K  LSMK             VDQ TG+ +
Sbjct: 294 TGT-KASLSMKASHLGCFHEEESDVDQVTGEDL 325


>gi|298695338|gb|ADI98560.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323439221|gb|EGA96948.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O11]
 gi|323442401|gb|EGB00030.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           O46]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|323339335|ref|ZP_08079622.1| general stress protein 13 [Lactobacillus ruminis ATCC 25644]
 gi|323093224|gb|EFZ35809.1| general stress protein 13 [Lactobacillus ruminis ATCC 25644]
          Length = 129

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G+V  +  +GAFV       GL+HIS+     +      +K G  V V ++D D
Sbjct: 7   IGMVLDGKVTGIQPYGAFVALDDKTQGLIHISECRHGFIDDIRSYLKVGQRVKVMIIDID 66

Query: 679 D-RGKIKLSMKVVDQN 693
           +   KI LS++ +++ 
Sbjct: 67  EYTQKISLSVRCLEKP 82


>gi|295663905|ref|XP_002792505.1| 3' exoribonuclease family [Paracoccidioides brasiliensis Pb01]
 gi|226279175|gb|EEH34741.1| 3' exoribonuclease family [Paracoccidioides brasiliensis Pb01]
          Length = 296

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     T GSS    G+T  I +V  G  E  +   +    +  
Sbjct: 15  RLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTVVICMVH-GPAEGRRSEATGPAREGA 73

Query: 373 DFMMHYNFLPCATGEVSRM--------GAPSRREIGHGRLARR-AIHPVLPQTAQFPYTL 423
              +  N    +  +  +         G   R+      +A R A  P L        T+
Sbjct: 74  VISVAVNIAGFSGVDRKKKSLAAGGGGGGGDRQASTDLAVALRDAFQPHLHTHLYPHSTI 133

Query: 424 RIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
            +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 134 SLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 176



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 26/147 (17%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLT----------------VNYQERTYAVG 71
            G+     G TVV+  V      +  +   P                  V+ ++++ A G
Sbjct: 38  SGSSYLAMGNTVVICMVHGPAEGRRSEATGPAREGAVISVAVNIAGFSGVDRKKKSLAAG 97

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVV 129
              GG  R+          ++  +  + +P         +   + I+V+  D   S    
Sbjct: 98  GGGGGGDRQ------ASTDLAVALRDAFQPHLHTHLYPHSTISLNISVLSSDG--SLFAA 149

Query: 130 SMVAASAALMLSGLPFEGPVVGAQVDY 156
            + A + AL+ +G+P  G +    V  
Sbjct: 150 CINACTLALVDAGIPMPGLLCACTVGM 176


>gi|53794017|gb|AAU93599.1| plastid-specific ribosomal protein-7 precursor [Chlamydomonas
           reinhardtii]
          Length = 560

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V VK+L  D ++ 
Sbjct: 67  YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 126

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 127 RVSLELK 133


>gi|168025430|ref|XP_001765237.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683556|gb|EDQ69965.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 899

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           ++ G+V  V  +GAFV      DGLVHIS+L+ + V + +DVV  G  V V++L+ +++ 
Sbjct: 67  VFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLELNEKA 126

Query: 681 GKIKLSMKVVDQNTGK 696
           G+I L+M+  +    +
Sbjct: 127 GRIALTMRDRENEEEE 142



 Score = 43.7 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +  T      +++       S  +    +           +  +  KG V  ++  GAF+
Sbjct: 129 IALTMRDRENEEEEQSSRPGSESSAGSGSGGEESGRPTKLKKGEELKGTVKNIIRNGAFI 188

Query: 638 HFCG-ARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            F     +  +  S+++         +++  G  V V++L   +RGK  L+MK
Sbjct: 189 EFAEQGEEAFLRGSEVTEGGENVPMENLLTVGQEVTVRVLKV-ERGKAYLTMK 240


>gi|302333710|gb|ADL23903.1| transcription accessory protein (S1 RNA binding) [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|283471279|emb|CAQ50490.1| protein YhgF [Staphylococcus aureus subsp. aureus ST398]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|258422935|ref|ZP_05685835.1| S1 domain RNA-binding protein [Staphylococcus aureus A9635]
 gi|257846959|gb|EEV70973.1| S1 domain RNA-binding protein [Staphylococcus aureus A9635]
          Length = 716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|294659326|ref|XP_461694.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
 gi|199433877|emb|CAG90142.2| DEHA2G03410p [Debaryomyces hansenii]
          Length = 1716

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            EV +I++G V +V DFGAF+   G     GL H SQ+S   V   S +  EGD V VK+L
Sbjct: 1244 EVGEIFEGSVRRVTDFGAFIKLDGTVNISGLCHHSQISDNDVENVSSLFGEGDRVKVKIL 1303

Query: 676  DFD-DRGKIKLSMKV 689
              D ++ ++ L MK 
Sbjct: 1304 AIDQEKKQLSLGMKA 1318



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           K +  GA V F G     +  +++S   V + SD +K G TV VK+L+ + 
Sbjct: 600 KFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNK 650



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%)

Query: 606  AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            A + +    +      I +G V  V + G ++    +   LV I+ LS   +       K
Sbjct: 1144 ATDKVIDSIEDLNRGDIIRGFVKNVANNGVYIALGRSIHALVRITDLSDSFLKDWKKYFK 1203

Query: 666  EGDTVWVKLLDFDDRGKIKLSMKV 689
                +  K+    + G+I +++K 
Sbjct: 1204 PHQPIIGKISSCKEEGRILMTLKE 1227



 Score = 37.6 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 582 GAKVNI----DDDGTVKIASSSLAEIEAAREMIRSITDVPEV---NKIYKGQVVKVMDFG 634
           G K+++     D  +  +  S+ A +  A +         ++   NK+  G +  V + G
Sbjct: 731 GDKIDVLVLEKDLKSRSVTVSAKASLIEAAKQDEVPAYFKDIKVDNKMLHGYIKSVTNMG 790

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            F+ F G   GLV     + +     S    +  +V  +++  D +  +  LS+K
Sbjct: 791 LFISFAGKLTGLVLAKYATDKPDEDLSKKFYKYQSVSCRVIRIDEENKRFLLSLK 845


>gi|324991778|gb|EGC23710.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353]
          Length = 119

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D
Sbjct: 1   MKIGDKLKGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKIGQQVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKSSLSMRTLEEE 78


>gi|224476055|ref|YP_002633661.1| hypothetical protein Sca_0562 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420662|emb|CAL27476.1| hypothetical protein with S1 RNA binding domain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 128

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  K +V  +  +GAFV      +GL+HIS++  + V   S  + EG  V  K+L  
Sbjct: 6   QIGQHVKVKVAGIQPYGAFVETPDNTEGLIHISEIMNDYVHNLSRFLSEGQIVRAKILSI 65

Query: 678 DDRGKIKLSMKVVD 691
           D+ GK+ LS+K  D
Sbjct: 66  DEEGKLNLSLKDND 79


>gi|221231683|ref|YP_002510835.1| transcription accessory protein [Streptococcus pneumoniae ATCC
           700669]
 gi|220674143|emb|CAR68663.1| putative transcription accessory protein [Streptococcus pneumoniae
           ATCC 700669]
          Length = 709

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|153006639|ref|YP_001380964.1| RNA-binding S1 domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030212|gb|ABS27980.1| RNA binding S1 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 527

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           ++ G V  V D+GAFV   G  +GLVH+S+LS +RV+K  D++  GD V V++L  D+  
Sbjct: 322 VFDGVVTSVQDYGAFVDI-GGVEGLVHVSELSWDRVSKPQDLLTAGDAVQVQVLRIDEDP 380

Query: 681 ---GKIKLSMKVVDQNTGKPIV 699
               +I LS+K +     +P+ 
Sbjct: 381 KKGERIGLSVKTLAPRP-EPVA 401



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           FG FV F G R GLV  S+  T R +      K GD     +L  D++ +I+LS
Sbjct: 433 FGVFVRFAGGR-GLVPASETGTPRGSDLRKSFKVGDGFRALVLAIDEQHRIRLS 485


>gi|159477689|ref|XP_001696941.1| plastid-specific ribosomal protein 7 [Chlamydomonas reinhardtii]
 gi|158274853|gb|EDP00633.1| plastid-specific ribosomal protein 7 [Chlamydomonas reinhardtii]
          Length = 560

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V VK+L  D ++ 
Sbjct: 67  YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 126

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 127 RVSLELK 133


>gi|257866923|ref|ZP_05646576.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257872560|ref|ZP_05652213.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257876520|ref|ZP_05656173.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
 gi|257800881|gb|EEV29909.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257806724|gb|EEV35546.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257810686|gb|EEV39506.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
          Length = 126

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I +G V  +  +GAFV       GL+H+S++ +       +V++ G  + V+++D 
Sbjct: 4   QIGNIIEGTVTGIQPYGAFVSLDKETQGLIHVSEIQSGFTKNIHEVLQIGQKIRVQIIDI 63

Query: 678 DD-RGKIKLSMKVVD 691
           D+   KI LS + ++
Sbjct: 64  DEYSQKISLSRRTLE 78


>gi|240102866|ref|YP_002959175.1| translation initiation factor IF-2 subunit alpha [Thermococcus
           gammatolerans EJ3]
 gi|254172226|ref|ZP_04878902.1| translation initiation factor 2 alpha subunit [Thermococcus sp.
           AM4]
 gi|259491469|sp|C5A4Z9|IF2A_THEGJ RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|214034122|gb|EEB74948.1| translation initiation factor 2 alpha subunit [Thermococcus sp.
           AM4]
 gi|239910420|gb|ACS33311.1| Translation initiation factor 2 alpha subunit (eIF2A) [Thermococcus
           gammatolerans EJ3]
          Length = 273

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V  +  +GAF+       ++G +HIS+++   V    D VKE
Sbjct: 1   MPRKAREYPEEGEFVVATVKNIHPYGAFLILDEYPGKEGFMHISEVAPTWVKNIRDYVKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V VK++  D ++G I LS+K V+Q   K
Sbjct: 61  GQKVVVKVIRVDPEKGHIDLSLKRVNQQQRK 91


>gi|293369484|ref|ZP_06616065.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292635436|gb|EFF53947.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 710

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +VV     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EVVSIHQHVMVRVMNVDYDRKRIQLSMIGVQQD 710


>gi|217967761|ref|YP_002353267.1| RNA binding S1 domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336860|gb|ACK42653.1| RNA binding S1 domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 552

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 4/142 (2%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           IP  +I        K    I ++   KV   D+   KI  S              I    
Sbjct: 304 IPVSEISWGRPSNIKNELKIGDKVRLKVLNIDEINKKIFLSMKQVEP---NPWDVIDKNY 360

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++  I  G++  + +FG F+      +GL+    LS ER     +  K GDT+ VK++D 
Sbjct: 361 KIGDIVSGKITNITEFGIFIEIKPGLEGLIPKKFLSWERTNDLFEKFKIGDTLEVKIIDL 420

Query: 678 D-DRGKIKLSMKVVDQNTGKPI 698
           D +  K+ LS + + ++  + I
Sbjct: 421 DKENKKLTLSRRDLLKDPWEDI 442



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 81/207 (39%), Gaps = 25/207 (12%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEI--------MAIPPDQI 563
           I+  +     +     +  I++    +  +   +      +++         + I  ++I
Sbjct: 149 INRRVEGKIKKINPEKKQLIISVREILEKKQEEERANLWEKIKNSQIVRGKIIKIDDEKI 208

Query: 564 RNVIGMGGKVIRGIVEQTGAKV-------NIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
              +G+G        E +   +       ++ D    KI S +     A   + ++  + 
Sbjct: 209 TVDLGLGITGEVEKDEISWFPIRNIRRYYSVGDIVKAKILSLNEDSKTAKLSIKQTQPNP 268

Query: 617 PEVNK-------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
             V K       I +G+++K+   G  V       G + +S++S  R +   + +K GD 
Sbjct: 269 WSVFKEKYPEGSIVEGEIIKIA--GGLVVKVDNLIGYIPVSEISWGRPSNIKNELKIGDK 326

Query: 670 VWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           V +K+L+ D+   KI LSMK V+ N  
Sbjct: 327 VRLKVLNIDEINKKIFLSMKQVEPNPW 353



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 10/197 (5%)

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           IT          I E ++                     + E + ++  F P  + + IP
Sbjct: 82  ITVSHKKAVENKIWEELLWAYQNNEPIQCKVTDYNGRGFIVEIKNEIEGFIP-AKEIDIP 140

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P             I   VE    K+N +    +      L +     E   ++ +  + 
Sbjct: 141 PINSPKYY------INRRVEGKIKKINPEKKQLIISVREILEK--KQEEERANLWEKIKN 192

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           ++I +G+++K+ D    V       G V   ++S   +         GD V  K+L  ++
Sbjct: 193 SQIVRGKIIKIDDEKITVDLGLGITGEVEKDEISWFPIRNIRRYYSVGDIVKAKILSLNE 252

Query: 680 RGKI-KLSMKVVDQNTG 695
             K  KLS+K    N  
Sbjct: 253 DSKTAKLSIKQTQPNPW 269



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I +    K+   D    K+  S    +   ++    I +  +  +  KG++V+ +  G 
Sbjct: 408 KIGDTLEVKIIDLDKENKKLTLSRRDLL---KDPWEDINEKYKEGQNIKGKIVEKIKDGY 464

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            V      +G +  +QLS E+        KE + +  K++  + +  +I LS+K +
Sbjct: 465 IVELEPGIEGFLPNTQLSFEK-ENEKVEFKENEEIEAKIIKINPQTRRIHLSIKAL 519


>gi|297170836|gb|ADI21855.1| hypothetical protein [uncultured verrucomicrobium HF0130_25O04]
          Length = 195

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +          +  + KG+V +V  +GAFV      DGLVHISQ+S +R+ K  D + EG
Sbjct: 69  DPWXDXDRXXRLGDVIKGKVXRVAGYGAFVELDHDIDGLVHISQISEDRIEKIKDYLNEG 128

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVD 691
           D V  +++  D   + I LS+K  D
Sbjct: 129 DEVSARVIKIDKEXRXIGLSIKXAD 153



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
             +  + A V      DG+VH+      R +    ++VK+ D V   + +   +  +I L
Sbjct: 2   RNLTSYXAXVELEEXXDGMVHVXDXXXTRKIXHXXEMVKKXDXVDAIVXEVXVENQRISL 61

Query: 686 SMKVVDQNTGKP 697
            MK    +    
Sbjct: 62  GMKQXXXDPWXD 73


>gi|299145320|ref|ZP_07038388.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_23]
 gi|298515811|gb|EFI39692.1| S1 RNA binding domain protein [Bacteroides sp. 3_1_23]
          Length = 710

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G V  + +FGAFV      +GLVH+SQL+   ++  ++VV     V V++++ D D
Sbjct: 637 MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPTEVVSIHQHVMVRVMNVDYD 696

Query: 680 RGKIKLSMKVVDQN 693
           R +I+LSM  V Q+
Sbjct: 697 RKRIQLSMIGVQQD 710


>gi|150025838|ref|YP_001296664.1| 30S ribosomal protein S1 [Flavobacterium psychrophilum JIP02/86]
 gi|149772379|emb|CAL43859.1| 30S ribosomal protein S1 [Flavobacterium psychrophilum JIP02/86]
          Length = 596

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +  ++E    K+N +    V    + +      ++  + I   
Sbjct: 160 QIDVKPIRDY----DQYVNKMMEFKVVKINHEFKNVVVSHKALIEADIEVQK--KEIIGQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  ++ +G V  +  +G F+   G  DGL+HI+ LS  R+   S+V++    + V +LD
Sbjct: 214 LQKGQVLEGVVKNITSYGVFIDL-GGVDGLIHITDLSWSRINHPSEVLELDQKLNVVILD 272

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I+L +K ++ +  
Sbjct: 273 FDDEKTRIQLGLKQLNAHPW 292



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 26/257 (10%)

Query: 462 IAMGLVKDGDDFIILSDISGDEDHL--GHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           I  G VK      ++ D+ G E  L    +D K            M+ K+  I+      
Sbjct: 132 IVNGFVKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDQYVNKMMEFKVVKINHE---- 187

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIV 578
                   +  I  ++     E   QL +    +E +          I +GG   +  I 
Sbjct: 188 FKNVVVSHKALIEADIEVQKKEIIGQL-QKGQVLEGVVKNITSYGVFIDLGGVDGLIHIT 246

Query: 579 EQTGAKVN---------------IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
           + + +++N               I D    K       +   A        ++   +K+ 
Sbjct: 247 DLSWSRINHPSEVLELDQKLNVVILDFDDEKTRIQLGLKQLNAHPWDALDANLAIGDKV- 305

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           KG+VV + D+GAF+      +GL+H+S++S    +    D VK GD V   +L  D   +
Sbjct: 306 KGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVKVGDIVEGVILTLDRSER 365

Query: 683 -IKLSMKVVDQNTGKPI 698
            + L +K + Q+    I
Sbjct: 366 KMSLGIKQMTQDPWTDI 382



 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   + G V    +FG FV      DGLV+IS LS  +++   S+ + 
Sbjct: 376 QDPWTDITSKYPVGSKHTGTVRNFTNFGIFVELEEGIDGLVYISDLSWTKKIKHPSEFIA 435

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G+ + + +L+ D D  K+ L  K    N  
Sbjct: 436 VGEKLDIVVLELDVDARKLSLGHKQTTANPW 466


>gi|284161171|ref|YP_003399794.1| translation initiation factor 2, subunit alpha [Archaeoglobus
           profundus DSM 5631]
 gi|284011168|gb|ADB57121.1| translation initiation factor 2, alpha subunit [Archaeoglobus
           profundus DSM 5631]
          Length = 273

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   +I  G V +VMDFGAFV       ++G+VHIS+++   +    D VK+G  V  K+
Sbjct: 17  PSPGEIVIGTVTRVMDFGAFVSLDEYENKEGMVHISEVAPGWIKDIRDHVKKGQKVVCKV 76

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L  +  RG I LS+K V +   + 
Sbjct: 77  LGVNPKRGHIDLSIKDVTERQKRE 100


>gi|146318089|ref|YP_001197801.1| hypothetical protein SSU05_0434 [Streptococcus suis 05ZYH33]
 gi|146320268|ref|YP_001199979.1| hypothetical protein SSU98_0421 [Streptococcus suis 98HAH33]
 gi|253751281|ref|YP_003024422.1| S1 RNA binding domain protein [Streptococcus suis SC84]
 gi|253753182|ref|YP_003026322.1| S1 RNA binding domain protein [Streptococcus suis P1/7]
 gi|253755005|ref|YP_003028145.1| S1 RNA binding domain protein [Streptococcus suis BM407]
 gi|145688895|gb|ABP89401.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus suis 05ZYH33]
 gi|145691074|gb|ABP91579.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus suis 98HAH33]
 gi|251815570|emb|CAZ51153.1| putative S1 RNA binding domain protein [Streptococcus suis SC84]
 gi|251817469|emb|CAZ55210.1| putative S1 RNA binding domain protein [Streptococcus suis BM407]
 gi|251819427|emb|CAR44902.1| putative S1 RNA binding domain protein [Streptococcus suis P1/7]
 gi|292557850|gb|ADE30851.1| RNA binding S1 [Streptococcus suis GZ1]
 gi|319757562|gb|ADV69504.1| hypothetical protein SSUJS14_0401 [Streptococcus suis JS14]
          Length = 123

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG V  +  +GAFV       GL+HIS++ T  V    D +K G  V V+++D
Sbjct: 1   MKIGDKLKGTVTGIQPYGAFVQLENGTTGLIHISEIKTGFVDNIYDHLKLGQEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+   K  LS++ +++   K
Sbjct: 61  FDEYTEKASLSIRTLEEEQQK 81


>gi|289167924|ref|YP_003446193.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288907491|emb|CBJ22328.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 709

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSCKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|226287267|gb|EEH42780.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 300

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     T GSS    G+T  I +V  G  E  +   + S  +  
Sbjct: 15  RLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTIVICMVH-GPAEGRRSEATGSAREGA 73

Query: 373 DFMMHYNFLPCATGEVSRM------------GAPSRREIGHGRLARR-AIHPVLPQTAQF 419
              +  N    +  +  +             G   R+      +A R A  P L      
Sbjct: 74  IISVAVNIAGFSGVDRKKKSLAAGAGGGGGGGGGDRQASTDLAIALRDAFQPHLHTHLYP 133

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
             T+ +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 134 HSTISLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 180


>gi|225011942|ref|ZP_03702380.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004445|gb|EEG42417.1| RNA binding S1 domain protein [Flavobacteria bacterium MS024-2A]
          Length = 668

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    +I++  +  +  KG+VV + D+GAFV      +GLVH+S++S    +    D VK
Sbjct: 371 KHPWDAISETLKEGEKVKGKVVVIADYGAFVEIEEGVEGLVHVSEMSWSTHLRSAQDFVK 430

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD V   +L  D +  K+ L +K +  +    I
Sbjct: 431 VGDEVEAVILSIDRESRKMSLGIKQITPDPWTDI 464



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  + I   
Sbjct: 242 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 295

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  R+   S++++    + V +LD
Sbjct: 296 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWSRINHPSEILELDQKLNVVILD 354

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FDD   +I+L +K + ++    I
Sbjct: 355 FDDNKSRIQLGLKQLSKHPWDAI 377



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    +   + G V    +FG F+      DGLV+IS LS  ++V   S+V+  
Sbjct: 459 DPWTDITSKYPIGSKHSGLVRNFTNFGVFIELEEGIDGLVYISDLSWTKKVKHPSEVLAL 518

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD + V +L+ D  G+ + L  K    N  
Sbjct: 519 GDKIDVIVLELDVEGRKLSLGHKQTKDNPW 548


>gi|149019492|ref|ZP_01834811.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
 gi|147930867|gb|EDK81847.1| S1 RNA binding domain [Streptococcus pneumoniae SP23-BS72]
          Length = 709

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|126695675|ref|YP_001090561.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9301]
 gi|126542718|gb|ABO16960.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 363

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 254 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLS 312

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 313 TKALEPEPG 321


>gi|332366352|gb|EGJ44103.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355]
          Length = 120

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D
Sbjct: 1   MKIGDKLKGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKIGQQVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKSSLSMRTLEEE 78


>gi|260170736|ref|ZP_05757148.1| RNA-binding protein [Bacteroides sp. D2]
 gi|315919072|ref|ZP_07915312.1| RNA-binding protein [Bacteroides sp. D2]
 gi|313692947|gb|EFS29782.1| RNA-binding protein [Bacteroides sp. D2]
          Length = 710

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +VV     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EVVSIHQHVMVRVMNVDYDRKRIQLSMIGVQQD 710


>gi|224112036|ref|XP_002316061.1| predicted protein [Populus trichocarpa]
 gi|222865101|gb|EEF02232.1| predicted protein [Populus trichocarpa]
          Length = 412

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  S V++ 
Sbjct: 249 RKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDISTVLQP 307

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 308 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 337


>gi|160882578|ref|ZP_02063581.1| hypothetical protein BACOVA_00531 [Bacteroides ovatus ATCC 8483]
 gi|156112022|gb|EDO13767.1| hypothetical protein BACOVA_00531 [Bacteroides ovatus ATCC 8483]
          Length = 710

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +VV     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EVVSIHQHVMVRVMNVDYDRKRIQLSMIGVQQD 710


>gi|125718638|ref|YP_001035771.1| hypothetical protein SSA_1840 [Streptococcus sanguinis SK36]
 gi|125498555|gb|ABN45221.1| RNA binding protein, putative [Streptococcus sanguinis SK36]
 gi|324991968|gb|EGC23890.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405]
 gi|324994065|gb|EGC25979.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678]
 gi|325686910|gb|EGD28934.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72]
 gi|325688788|gb|EGD30797.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115]
 gi|325695230|gb|EGD37131.1| S1 RNA binding domain protein [Streptococcus sanguinis SK150]
 gi|325697716|gb|EGD39601.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160]
 gi|327459271|gb|EGF05617.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1]
 gi|327467204|gb|EGF12708.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330]
 gi|327472697|gb|EGF18124.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408]
 gi|327490489|gb|EGF22270.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058]
 gi|328945023|gb|EGG39179.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087]
 gi|332358066|gb|EGJ35899.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056]
 gi|332362994|gb|EGJ40783.1| S1 RNA binding domain protein [Streptococcus sanguinis SK49]
          Length = 120

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D
Sbjct: 1   MKIGDKLKGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKIGQQVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKSSLSMRTLEEE 78


>gi|18403854|ref|NP_566737.1| S1 RNA-binding domain-containing protein [Arabidopsis thaliana]
 gi|9293944|dbj|BAB01847.1| unnamed protein product [Arabidopsis thaliana]
 gi|15146284|gb|AAK83625.1| AT3g23700/MYM9_3 [Arabidopsis thaliana]
 gi|22655022|gb|AAM98102.1| At3g23700/MYM9_3 [Arabidopsis thaliana]
 gi|332643282|gb|AEE76803.1| ribosomal protein S1-like RNA-binding domain-containing protein
           [Arabidopsis thaliana]
          Length = 392

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVV 664
               +    V  ++ G+V  V D+GAF+H           GLVH+S++S + V    DV+
Sbjct: 186 WPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVL 245

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           ++GD V V + + D ++ +I LS+K ++ + 
Sbjct: 246 RDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276


>gi|91070108|gb|ABE11032.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
           clone ASNC729]
          Length = 363

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 254 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLS 312

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 313 TKALEPEPG 321


>gi|259047200|ref|ZP_05737601.1| general stress protein 13 [Granulicatella adiacens ATCC 49175]
 gi|259036250|gb|EEW37505.1| general stress protein 13 [Granulicatella adiacens ATCC 49175]
          Length = 129

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I   +V  V ++G F+       GL+HIS+     +      VK G  V  K++D D
Sbjct: 7   IGDIVTAKVTGVQNYGVFLELDEDTQGLIHISECKHGYMDNVHAFVKVGQEVTAKVIDVD 66

Query: 679 D-RGKIKLSMKVVDQ 692
           +   KI LS++ +++
Sbjct: 67  EFSNKISLSIRALEK 81


>gi|237830305|ref|XP_002364450.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962114|gb|EEA97309.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221487524|gb|EEE25756.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221507320|gb|EEE32924.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1206

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 620 NKIYKGQVVKVMDFGAFVHFC---GARDGLVHISQL--STERVAKTSDVVKEGDTVWVKL 674
             IY+G V KV++FG FV      G R GL+H++ +  +  R  +  DVV     V VK+
Sbjct: 240 YAIYEGVVEKVVEFGCFVRLEFDEGTRQGLLHVADMIKTDGRPIQPQDVVHRNMVVKVKI 299

Query: 675 LDFDDRGKIKLSMKVVDQNTGKPI 698
           L      KI LSM+ VDQ TG+ +
Sbjct: 300 LGIAGT-KISLSMREVDQETGEDL 322


>gi|121613103|ref|YP_001000568.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005501|ref|ZP_02271259.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249476|gb|EAQ72436.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 556

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I ++ +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNIAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDGFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSTKEL 445



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|86152098|ref|ZP_01070310.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124389|ref|YP_004066393.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840883|gb|EAQ58133.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018111|gb|ADT66204.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 556

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDGFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSTKEL 445



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|53794019|gb|AAU93600.1| chloroplast polyprotein of elongation factor Ts precursor
           [Chlamydomonas reinhardtii]
          Length = 603

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V VK+L  D ++ 
Sbjct: 67  YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 126

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 127 RVSLELK 133


>gi|307108388|gb|EFN56628.1| hypothetical protein CHLNCDRAFT_22007 [Chlorella variabilis]
          Length = 327

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + +G V+ V  +GAFV   GA  GL+HISQ+S +R+     V+ EGD + V +L  
Sbjct: 206 KVGDVVEGTVISVKPYGAFVDIGGA-SGLLHISQISHDRITNVDKVLSEGDRIKVMVLSQ 264

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D +RG++ L  K ++   G
Sbjct: 265 DRERGRVALCTKKLEPTPG 283


>gi|283954454|ref|ZP_06371974.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 414]
 gi|283794071|gb|EFC32820.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 414]
          Length = 556

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKILDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVSVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++      +V  I KG +  + DFG FV      D L+H   +S   +      +K GD
Sbjct: 449 PVQEYAKTHKVGDIVKGIIRDIKDFGIFVELSKNVDALIHKEDISASMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            V   ++  D++  +I+LS+K +
Sbjct: 505 DVEAAIVFIDEKKNRIRLSVKNL 527



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 22/190 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDSLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKNYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIGDVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLDFDDRGKIK 684
           +++ V  FGAFV   G  +GL+H      +R  K  D   +G       +    +  KI 
Sbjct: 381 EIISVTSFGAFVKL-GGIEGLLHNEDAFWDRSDKCKDKFSQGDKIKVKIIKIDKEDQKIS 439

Query: 685 LSMKVVDQNT 694
           LS+K +  + 
Sbjct: 440 LSIKELSNSP 449


>gi|7007440|dbj|BAA90854.1| YdcI [Bacillus halodurans]
          Length = 315

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFG FV     +DGLVHIS+L+   +    +VV  G+ V V + D D  +G
Sbjct: 242 LQGTVRNVVDFGVFVDIGVKQDGLVHISKLANRYIKHPLEVVTVGEIVTVWVEDVDIKKG 301

Query: 682 KIKLSM-KVVDQN 693
           +I L+M +  DQN
Sbjct: 302 RIALTMLRPEDQN 314


>gi|323447671|gb|EGB03584.1| hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens]
          Length = 328

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            A +     + D+ E N+ Y G++  +  +GAFV      DGLVHIS+LS   V   + V
Sbjct: 53  RADKSKATPLADLVEGNE-YAGKITGLAAYGAFVDIGAQSDGLVHISELSASYVDDVASV 111

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           VKEGD V V++L  D  + ++ LSMK
Sbjct: 112 VKEGDDVTVRILKIDSGKKQLSLSMK 137



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + A           +  +   G V  V+++GAFV+     DGLVHIS++S  RV      
Sbjct: 155 KKAGAEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAE 214

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           +  GD V V+++D D D+  + L+M      T  P
Sbjct: 215 LSVGDEVKVRIIDVDLDKATLGLAMNTYRDPTAPP 249


>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Talaromyces stipitatus ATCC 10500]
 gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Talaromyces stipitatus ATCC 10500]
          Length = 284

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 6/158 (3%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
            K+R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E           
Sbjct: 12  TKLRLDGRRWNELRLLQAQISTNSASSGSSYLSMGNTSIMCTVH-GPHETS----GAGSA 66

Query: 370 QRNDFMMHYNFLPCATGEVSRM-GAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 +  N    A  +  R  G   R+        + A    L        T+ +   
Sbjct: 67  TEALVDIDVNIAGFAGVDRKRRAGGSDRQSSQLSTALKSAFQSHLHTYLYPHSTITVQVS 126

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +  SDGS   A +   +LAL+DAG+P+   +     G+
Sbjct: 127 VLSSDGSLFAAAINACTLALVDAGIPMPGLLCACTAGM 164



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 35  YGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN-EILISR 93
            G T ++ TV                V+       +    G   +R +  ++     +S 
Sbjct: 45  MGNTSIMCTVHGPHETSGAGSATEALVD---IDVNIAGFAGVDRKRRAGGSDRQSSQLST 101

Query: 94  MIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
            +  + +          +   V ++V+  D   S    ++ A + AL+ +G+P  G +  
Sbjct: 102 ALKSAFQSHLHTYLYPHSTITVQVSVLSSDG--SLFAAAINACTLALVDAGIPMPGLLCA 159

Query: 152 AQVDY 156
                
Sbjct: 160 CTAGM 164


>gi|159477691|ref|XP_001696942.1| polyprotein of PSRP-7 and EF-Ts, splice variant 2 [Chlamydomonas
           reinhardtii]
 gi|158274854|gb|EDP00634.1| polyprotein of PSRP-7 and EF-Ts, splice variant 2 [Chlamydomonas
           reinhardtii]
          Length = 603

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V VK+L  D ++ 
Sbjct: 67  YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 126

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 127 RVSLELK 133


>gi|149371381|ref|ZP_01890867.1| 30S ribosomal protein S1 [unidentified eubacterium SCB49]
 gi|149355519|gb|EDM44078.1| 30S ribosomal protein S1 [unidentified eubacterium SCB49]
          Length = 621

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +       E  + I   
Sbjct: 194 QIDVKPIRDYDVYVGKTMEFKV----VKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 247

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G FV   G  DGLVHI+ LS  R+   +++V+    + V +LD
Sbjct: 248 LEKGQVLEGVVKNITSYGVFVDL-GGVDGLVHITDLSWSRINHPNEIVELDQKLNVVILD 306

Query: 677 FD-DRGKIKLSMKVVDQNTGKPI 698
           FD D+ +I+L +K +  +  + +
Sbjct: 307 FDEDKTRIQLGLKQLSAHPWEAL 329



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V  ++KG V    +FG FV      DGL++IS LS  +++   S+    
Sbjct: 411 DPWTDITTKYPVGSLHKGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFTNV 470

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GDT+ VK+L+ D  G+ + L  K  ++N  
Sbjct: 471 GDTLEVKVLELDVEGRKLSLGHKQTEENPW 500



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKE 666
               ++ D  ++    +G+VV + D+GAF+      +GL+H+S++S    +    D VK 
Sbjct: 324 HPWEALGDELKIGDKVEGKVVVIADYGAFIEVTEGVEGLIHVSEMSWSTHLRSAQDFVKV 383

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V  ++L  D +  K+ L +K +  +    I
Sbjct: 384 GDKVNAQILTLDREERKMSLGIKQLTPDPWTDI 416


>gi|205356378|ref|ZP_03223143.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345763|gb|EDZ32401.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 556

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVVDQNT 694
           LS K ++ + 
Sbjct: 440 LSAKELNSSP 449



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|57237722|ref|YP_178970.1| 30S ribosomal protein S1 [Campylobacter jejuni RM1221]
 gi|57166526|gb|AAW35305.1| ribosomal protein S1 [Campylobacter jejuni RM1221]
 gi|315058333|gb|ADT72662.1| SSU ribosomal protein S1p [Campylobacter jejuni subsp. jejuni S3]
          Length = 556

 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVVDQNT 694
           LS K ++ + 
Sbjct: 440 LSAKELNSSP 449



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|283956238|ref|ZP_06373718.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791958|gb|EFC30747.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 1336]
          Length = 556

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      E  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDEERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVRL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSAKEL 445



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|157415150|ref|YP_001482406.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386114|gb|ABV52429.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747793|gb|ADN91063.1| Ribosomal protein S1 [Campylobacter jejuni subsp. jejuni M1]
          Length = 556

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSTKEL 445



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|160934311|ref|ZP_02081698.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753]
 gi|156866984|gb|EDO60356.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753]
          Length = 686

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 22/222 (9%)

Query: 491 FKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
            +V    S  TA + D     + + +    ++  +  R  + +  S +  E +    +F 
Sbjct: 422 VRVFIPASQATASRGDSLEDLLKQEVKFRIIEVNRGRRRAVGSIRSVLKDERKKLAEKFW 481

Query: 551 PRVEIMAIPPDQIRNVIGMGGKV-------IRGIVEQTGAKV-------NIDDDGTVKIA 596
              EI  +    ++++   G  V       +  I E + +++       N+ D   V I 
Sbjct: 482 ETAEIGKVYTGTVKSLTSYGAFVDLGGIDGMVHISELSWSRIKHPSEIVNVGDTVEVYIK 541

Query: 597 SSSLAEIEAAREMIRSITDVPEVNK-------IYKGQVVKVMDFGAFVHFCGARDGLVHI 649
                + + +    ++  +  E+ K       + +  VV +  FGAF       DGL+HI
Sbjct: 542 DLDPEKGKISLGYKKTEDNPWEILKRDYPVGSVVEVTVVGMTTFGAFARILPGIDGLIHI 601

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           SQ++  R+ K  DV+  GD V V + D D D+ +I LS++ +
Sbjct: 602 SQIADHRIEKPQDVLAIGDVVKVAITDIDFDKKRISLSIRKL 643



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I  G      I+++    +   D    K  +          EM+         ++   G 
Sbjct: 262 ITAGASTPASIIKEALETMT--DILENKEMTEINEGEMNFEEMLEESLKSFTTDEKVHGV 319

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKL 685
           VV +     +V     + G V +++LS +  AK  D+VK GD + + ++   D  G I L
Sbjct: 320 VVGIAPNEIYVDVGRKQAGFVPLAELSADPNAKAEDLVKIGDEMDLLIMRTNDQEGTIML 379

Query: 686 SMKVVDQ-NTGKPIV 699
           S K +D     + IV
Sbjct: 380 SKKRLDAIKGWEEIV 394


>gi|315932624|gb|EFV11555.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 532

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 127 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 186

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 187 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 245

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 246 IKAALPDPWSEI 257



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 237 KERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 296

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 297 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 356

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 357 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 415

Query: 685 LSMKVV 690
           LS K +
Sbjct: 416 LSTKEL 421



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 425 PVQEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 480

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 481 DIEAAIVFIDEKKNRIRLSVKNL 503


>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
 gi|123892820|sp|Q28F19|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog
 gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
 gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
          Length = 270

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 26/201 (12%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFI--RGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           GR     R +  + GLL +  GS+      G T+ +  V  G R  E+ +       R  
Sbjct: 34  GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVH-GPR--ERGMGGERAETRGR 90

Query: 374 FMMHYNFLPCATGEVSRMG--------APSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
            +    + P +     R G         PS R+ G     + ++ P +         + +
Sbjct: 91  LLCDLRWAPFS-----RRGPWSGSCPAGPSPRQAGLQ--LQESLEPAVRLDRYPRAEVIV 143

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
              + E  GS+  A V  +SLAL DAG+ +     G     +  G    +L D   DE+ 
Sbjct: 144 WVLVLEDRGSALPAAVSCASLALADAGIEMFDLALG---CGLSRGPGGELLLDPDDDEEE 200

Query: 486 LGH---MDFKVAGTDSGITAM 503
            G    M   +  T + ++ +
Sbjct: 201 AGSGGTMSLSLLPTLNQVSGL 221



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 87/242 (35%), Gaps = 33/242 (13%)

Query: 14  RPLKLETGRIARQSDGAVLAT--YGETVVLATVVYDRSLKDGQDFFP----LTVNYQERT 67
           RP+ +  G ++ Q+ G+       G T VL  V   R    G +       L  + +   
Sbjct: 41  RPVFVRAGLLS-QAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAP 99

Query: 68  YA-----VGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDL 122
           ++      G  P G   R++     E L   +          +  + E  VI+ V+  + 
Sbjct: 100 FSRRGPWSGSCPAGPSPRQAGLQLQESLEPAV-------RLDRYPRAE--VIVWVLVLED 150

Query: 123 ESSPHVVSMVAASAALMLSGLP-FEGPVVGAQVDY---INGQYVLNPRLDEDQ----GSL 174
             S    ++  AS AL  +G+  F+  +            G+ +L+P  DE++    G++
Sbjct: 151 RGSALPAAVSCASLALADAGIEMFDLALGC---GLSRGPGGELLLDPDDDEEEAGSGGTM 207

Query: 175 DLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
            L +  T + V  +        E    +A+      C+ +   + +      K  I +  
Sbjct: 208 SLSLLPTLNQVSGLISSGEWEGESS-EEAVRLCMEGCQRLYPVLHQCLVKATKRKIPVPQ 266

Query: 235 KD 236
            D
Sbjct: 267 PD 268


>gi|86150205|ref|ZP_01068432.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597510|ref|ZP_01100744.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562513|ref|YP_002344292.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839321|gb|EAQ56583.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190102|gb|EAQ94077.1| ribosomal protein S1 [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360219|emb|CAL35014.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315927556|gb|EFV06889.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929971|gb|EFV09122.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 556

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSTKEL 445



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|153806802|ref|ZP_01959470.1| hypothetical protein BACCAC_01076 [Bacteroides caccae ATCC 43185]
 gi|149131479|gb|EDM22685.1| hypothetical protein BACCAC_01076 [Bacteroides caccae ATCC 43185]
          Length = 710

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G V  + +FGAFV      +GLVH+SQL+   ++  +++V     V VK+++ D D
Sbjct: 637 MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPTEIVSIHQQVMVKIINVDTD 696

Query: 680 RGKIKLSMKVVDQN 693
           R +I+LSM  V Q+
Sbjct: 697 RKRIQLSMIGVPQD 710


>gi|284926127|gb|ADC28479.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 556

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSTKEL 445



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527


>gi|182683855|ref|YP_001835602.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|307127540|ref|YP_003879571.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
 gi|182629189|gb|ACB90137.1| transcriptional regulator, putative [Streptococcus pneumoniae
           CGSP14]
 gi|306484602|gb|ADM91471.1| transcriptional accessory protein [Streptococcus pneumoniae 670-6B]
          Length = 715

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 639 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 698

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 699 TEREKVNLSLLAPNET 714


>gi|148997004|ref|ZP_01824658.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575569|ref|ZP_02721505.1| protein tex [Streptococcus pneumoniae MLV-016]
 gi|307067562|ref|YP_003876528.1| transcriptional accessory protein [Streptococcus pneumoniae AP200]
 gi|147756704|gb|EDK63744.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578556|gb|EDT99084.1| protein tex [Streptococcus pneumoniae MLV-016]
 gi|306409099|gb|ADM84526.1| Transcriptional accessory protein [Streptococcus pneumoniae AP200]
          Length = 709

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V K  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGKKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|146300512|ref|YP_001195103.1| 30S ribosomal protein S1 [Flavobacterium johnsoniae UW101]
 gi|146154930|gb|ABQ05784.1| 30S ribiosomal protein S1 [Flavobacterium johnsoniae UW101]
          Length = 591

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +  ++E    K+N +    V    + +      ++  + I   
Sbjct: 160 QIDVKPIRDY----DVYVNKMMEFKVVKINHEFKNVVVSHKALIEADIEVQK--KEIIGQ 213

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  ++ +G V  +  +G F+   G  DGL+HI+ LS  R+   S+V++    + V +LD
Sbjct: 214 LQKGQVLEGVVKNITSYGVFIDL-GGVDGLIHITDLSWSRINHPSEVLELDQKLNVVILD 272

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I+L +K ++ +  
Sbjct: 273 FDDEKTRIQLGLKQLNAHPW 292



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
              V I D    K       +   A        ++   +K+ KG+VV + D+GAF+    
Sbjct: 265 KLNVVILDFDDEKTRIQLGLKQLNAHPWDALDANLTVGDKV-KGKVVVIADYGAFIEVAE 323

Query: 642 ARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             +GL+H+S++S    +    D VK GD V   +L  D +  K+ L +K + Q+    I
Sbjct: 324 GVEGLIHVSEMSWSTHLRSAQDFVKVGDVVEAVILTLDREDRKMSLGIKQLTQDPWTDI 382



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   + G V    +FG FV      DGL++IS LS  +++   S+ V 
Sbjct: 376 QDPWTDITSKYPVGSKHTGIVRNFTNFGIFVELEEGIDGLIYISDLSWTKKIKHPSEFVN 435

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            G+ + V +L+ D  G+ + L  K    N  
Sbjct: 436 VGEKLDVVVLELDVEGRKLSLGHKQTTANPW 466



 Score = 37.2 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                 D   V  I+ G++ +++D GA V F       +    L  E   K    +K+GD
Sbjct: 465 PWDQYEDSFAVGTIHNGEISEIVDKGATVEFGDDIVAFIPTRHLEKEDGKK----LKKGD 520

Query: 669 TVWVKLLDFDDRGK 682
           T   K+++F+   K
Sbjct: 521 TADFKVIEFNKEFK 534


>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 230

 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 91/215 (42%), Gaps = 13/215 (6%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           ++ R DGR +  +R ++A+ G+L R  GS+ F++G+T  +  V  G    +    SL   
Sbjct: 2   EETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAV-YGPAPAK----SLRME 56

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +     +  +F P +       G  S  +     L RR++  V+ ++      + ++ ++
Sbjct: 57  RSEGATLDVSFKPES-------GITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQV 109

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
              DG+   A +  +++AL++AGV ++     +   +        +L D    E+     
Sbjct: 110 IVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAA 169

Query: 490 DFKVAGTDSGITAMQMDMKIGGISENIMVMALQQA 524
              VA   +G   +     +G +S+       + A
Sbjct: 170 TAVVATLSAGG-GVLSCHAVGSMSQEEYFACCEAA 203


>gi|229824323|ref|ZP_04450392.1| hypothetical protein GCWU000282_01644 [Catonella morbi ATCC 51271]
 gi|229786123|gb|EEP22237.1| hypothetical protein GCWU000282_01644 [Catonella morbi ATCC 51271]
          Length = 133

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               ++  I +GQ+  + ++G FV       GLVHIS+     + + S+ +K GD V V 
Sbjct: 1   MTEFKIGDIVEGQITGIQNYGVFVGLSPTEQGLVHISECKHGYMNELSNQIKVGDKVKVM 60

Query: 674 LLDFDD-RGKIKLSMKVV 690
           ++D D+   KI LSM+V+
Sbjct: 61  VIDIDEYTKKISLSMRVL 78


>gi|291460836|ref|ZP_06025454.2| S1 RNA binding domain protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380427|gb|EFE87945.1| S1 RNA binding domain protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 733

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D 
Sbjct: 659 EVGMELEGTVRNVVKFGAFVDIGLKNDALLHISEISNKYIDDPSKVLAVGQIIKVRIKDV 718

Query: 678 D-DRGKIKLSMKV 689
           D DRG++ L+ K 
Sbjct: 719 DKDRGRVGLTKKE 731


>gi|332204911|gb|EGJ18976.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47901]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|229824286|ref|ZP_04450355.1| hypothetical protein GCWU000282_01591 [Catonella morbi ATCC 51271]
 gi|229786259|gb|EEP22373.1| hypothetical protein GCWU000282_01591 [Catonella morbi ATCC 51271]
          Length = 725

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVE-QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+ P Q+   + +G   I  I+E       +I D G   I    +  ++           
Sbjct: 596 ALKPAQLAQELEVGQATIVDIIEGLKHPLHDIRDAGPAPILREDVMSLD----------- 644

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV    +G V  V+DFGAFV     +DGL+HIS+LS + +   S+ V  GD + V++ 
Sbjct: 645 DLEVGMQLQGVVRNVVDFGAFVDIGVKQDGLIHISKLSKKFIKHPSEAVAVGDILEVEVT 704

Query: 676 DFD-DRGKIKLSM 687
             D  +G+I L  
Sbjct: 705 VLDKKKGRIGLKR 717


>gi|148984645|ref|ZP_01817913.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|149010452|ref|ZP_01831823.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168490996|ref|ZP_02715139.1| protein tex [Streptococcus pneumoniae CDC0288-04]
 gi|225861200|ref|YP_002742709.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229397|ref|ZP_06963078.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255859|ref|ZP_06979445.1| S1 RNA binding domain protein [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503083|ref|YP_003725023.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147764933|gb|EDK71862.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923036|gb|EDK74151.1| pyruvate kinase [Streptococcus pneumoniae SP3-BS71]
 gi|183574580|gb|EDT95108.1| protein tex [Streptococcus pneumoniae CDC0288-04]
 gi|225727709|gb|ACO23560.1| S1 RNA binding domain protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238678|gb|ADI69809.1| S1 domain RNA-binding protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799893|emb|CBW32471.1| putative transcription accessory protein [Streptococcus pneumoniae
           OXC141]
 gi|327389190|gb|EGE87535.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04375]
 gi|332202763|gb|EGJ16832.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41317]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|1075612|pir||S51485 ribosomal protein S1 - Synechococcus sp. (PCC 6301)
 gi|666973|dbj|BAA05946.1| ribosomal protein S1 [Synechococcus elongatus PCC 6301]
          Length = 307

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S + +     V    D V V ++D D +RG+I LS
Sbjct: 205 RGIKPYGAFIDI-GGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLS 263

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 264 TKQLEPEPG 272


>gi|223933222|ref|ZP_03625213.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|330832256|ref|YP_004401081.1| RNA binding S1 domain-containing protein [Streptococcus suis ST3]
 gi|223898152|gb|EEF64522.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|329306479|gb|AEB80895.1| RNA binding S1 domain protein [Streptococcus suis ST3]
          Length = 123

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG V  +  +GAFV       GL+HIS++ T  V    D +K G  V V+++D
Sbjct: 1   MKIGDKLKGTVTGIQPYGAFVQLENGTTGLIHISEIKTGFVDNIYDHLKLGQEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+   K  LS++ +++   K
Sbjct: 61  FDEYTEKASLSIRTLEEEQQK 81


>gi|182413325|ref|YP_001818391.1| RNA-binding S1 domain-containing protein [Opitutus terrae PB90-1]
 gi|177840539|gb|ACB74791.1| RNA binding S1 domain protein [Opitutus terrae PB90-1]
          Length = 794

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVHISQL+   V   + VVK    V V +++ D  R +I
Sbjct: 670 GIVTNVTAFGAFVDIGVHQDGLVHISQLADTFVKDAATVVKPQQKVTVTVVEVDLARNRI 729

Query: 684 KLSMKVVDQNTGKP 697
            LSM+   +   +P
Sbjct: 730 ALSMRSNPEIGPRP 743


>gi|148992962|ref|ZP_01822581.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|168490278|ref|ZP_02714477.1| protein tex [Streptococcus pneumoniae SP195]
 gi|147928414|gb|EDK79430.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183571410|gb|EDT91938.1| protein tex [Streptococcus pneumoniae SP195]
 gi|332073238|gb|EGI83717.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17570]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|332521413|ref|ZP_08397867.1| RNA binding S1 domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042812|gb|EGI79011.1| RNA binding S1 domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 630

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  + I   
Sbjct: 202 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNVVVSHKALIEADIE--EQKKEIIGQ 255

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGLVHI+ LS  R+   +++V+    + V +LD
Sbjct: 256 LEKGQVLEGVVKNITSYGVFIDL-GGVDGLVHITDLSWSRINHPNEIVELDQKLNVVILD 314

Query: 677 FDDRG-KIKLSMKVVDQNTG 695
           FD+   +I+L +K + ++  
Sbjct: 315 FDENKSRIQLGLKQLSKHPW 334



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ +   V    KG+VV + D+GAF+      +GLVH+S++S    +   +D V 
Sbjct: 331 KHPWDALGEEVSVGDKVKGKVVVIADYGAFIEVAEGVEGLVHVSEMSWSTHLRSANDFVN 390

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD +  ++L  D +  K+ L +K + Q+    I
Sbjct: 391 VGDEIEAQILTLDREDRKMSLGIKQLSQDPWTDI 424



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++    IT    V   + G V    +FG FV      DGL++IS LS  +++   S+   
Sbjct: 418 QDPWTDITTKYPVGSKHTGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCN 477

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            GD + V +L+ D  G+ + L  K   +N  
Sbjct: 478 VGDKLDVVVLELDVEGRKLSLGHKQTTENPW 508


>gi|295702437|ref|YP_003595512.1| S1 RNA binding domain-containing protein [Bacillus megaterium DSM
           319]
 gi|294800096|gb|ADF37162.1| S1 RNA binding domain protein [Bacillus megaterium DSM 319]
          Length = 724

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAF+     +DGLVHIS+L+   V    DVV  GD V V + D D  +G
Sbjct: 654 LEGTVRNVVDFGAFIDIGVKQDGLVHISKLTNRYVKHPLDVVSVGDLVNVWVEDVDMKKG 713

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 714 RVALTM 719


>gi|225858705|ref|YP_002740215.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
 gi|225720875|gb|ACO16729.1| S1 RNA binding domain protein [Streptococcus pneumoniae 70585]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|224024678|ref|ZP_03643044.1| hypothetical protein BACCOPRO_01406 [Bacteroides coprophilus DSM
           18228]
 gi|224017900|gb|EEF75912.1| hypothetical protein BACCOPRO_01406 [Bacteroides coprophilus DSM
           18228]
          Length = 710

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                ++    + +R+I DV E  ++  G V  + +FG FV       GL+H+SQL+   
Sbjct: 617 PRQKIQVFEFDKNVRTIDDVQEGMEL-PGIVTNITNFGCFVDLGIKEKGLIHVSQLADRF 675

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+  + VV     V V+++  D +R +I L+MK
Sbjct: 676 VSDPTTVVSIHQHVRVRVIGVDRERKRIALTMK 708


>gi|257437093|ref|ZP_05613133.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282914908|ref|ZP_06322688.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|257283486|gb|EEV13613.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus M876]
 gi|282321111|gb|EFB51442.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M899]
          Length = 716

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIHSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|149007144|ref|ZP_01830808.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
 gi|147761182|gb|EDK68149.1| S1 RNA binding domain [Streptococcus pneumoniae SP18-BS74]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVSVWVKQID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|315640774|ref|ZP_07895876.1| YhgF like protein [Enterococcus italicus DSM 15952]
 gi|315483529|gb|EFU74023.1| YhgF like protein [Enterococcus italicus DSM 15952]
          Length = 725

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSIT 614
            +  +++ +  G+    ++ I+            G V+        + A   R+ + +IT
Sbjct: 595 QVSQEKLADQWGIAVVTLQDII-----------QGLVQPGRDMRDAMPAPLLRKDVLTIT 643

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D+    ++ KG V  V+DFGAFV      DGLVH+S+LS + V K S++V  GD V V +
Sbjct: 644 DLSAGMEL-KGTVRNVVDFGAFVDIGVKHDGLVHVSKLSEKFVKKASEIVAVGDIVSVWV 702

Query: 675 LDFD-DRGKIKLSM 687
              D  R ++ L+M
Sbjct: 703 EQVDLARERVSLTM 716


>gi|294497072|ref|YP_003560772.1| S1 RNA binding domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|294347009|gb|ADE67338.1| S1 RNA binding domain protein [Bacillus megaterium QM B1551]
          Length = 724

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAF+     +DGLVHIS+L+   V    DVV  GD V V + D D  +G
Sbjct: 654 LEGTVRNVVDFGAFIDIGVKQDGLVHISKLTNRYVKHPLDVVSVGDLVNVWVEDVDMKKG 713

Query: 682 KIKLSM 687
           ++ L+M
Sbjct: 714 RVALTM 719


>gi|86153404|ref|ZP_01071608.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843130|gb|EAQ60341.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 556

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 570 GGKVIRGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G K    I+ +T     + ID D    I S      +  R+    I +V +   + +G V
Sbjct: 151 GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIV 210

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K+  +G FV   G  DGLVH S++S +       + KEGD V VK++ +D +R  + LS
Sbjct: 211 KKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLS 269

Query: 687 MKVVDQNTGKPI 698
           +K    +    I
Sbjct: 270 IKAALPDPWSEI 281



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 DIEAAIVFIDEKKNRIRLSVKNL 527



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +    +    I E 
Sbjct: 261 KERKHLSLSIKAALPDPWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLENDIEGFLHISEI 320

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIR---------------SITDVPEVNKIYKG 625
           +  K   +    +        E+       R                     ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSTKEL 445


>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
           2088]
 gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
           2088]
          Length = 270

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 101/278 (36%), Gaps = 43/278 (15%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           + +  +I  + + +++ +   R+DGR     RDI  + G++ +  GS+    GDTQ +V 
Sbjct: 6   MEIIPEIMKEDIISLISNN-KRLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVG 64

Query: 352 V--TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR-- 407
           V  T+G    E + D          + +   LP A+      G P  R I   R+  R  
Sbjct: 65  VKPTIG----EPFPD---NPNLGIIITNSELLPMASPTFEP-GPPDERSIELARVVDRCI 116

Query: 408 ------AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP------- 454
                  +  +     +  + L I   I + DG+   A+V G+  ALMD  +P       
Sbjct: 117 RESNMLDLEKLCIIEGEKVWILFIDLHILDYDGNLFDASVLGAVAALMDTKLPKVSIEDD 176

Query: 455 -------------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
                        I   VA      + D     ++ D S +E+ +      +     G  
Sbjct: 177 EVVIDDSSVELLDIKDKVAMCTFAKIGDE----LVLDPSLEEEEILTARLSIGMNSEGKI 232

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
                   G +S   +  A+  A+     +L  +  + 
Sbjct: 233 CAMQKGGKGSLSREDISKAINIAEEKTPELLQHLENIR 270



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 95/245 (38%), Gaps = 46/245 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R +K++TG I++ ++G+     G+T VL  V         D  +   +  N +    A  
Sbjct: 36  RDIKIKTGVISK-AEGSARVKLGDTQVLVGVKPTIGEPFPDNPNLGIIITNSELLPMASP 94

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ------VIINVMQHD 121
               G       P E  I ++R++DR IR        K    E +      + ++++ +D
Sbjct: 95  TFEPGP------PDERSIELARVVDRCIRESNMLDLEKLCIIEGEKVWILFIDLHILDYD 148

Query: 122 LESSPHVVSMVAASAALMLSGLP--------------------FEGPVVGAQVDYINGQY 161
             +     S++ A AALM + LP                     +  V       I  + 
Sbjct: 149 G-NLFD-ASVLGAVAALMDTKLPKVSIEDDEVVIDDSSVELLDIKDKVAMCTFAKIGDEL 206

Query: 162 VLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEA 217
           VL+P L+E++     L + ++ ++  +  ++      LS + +  AI     +   +++ 
Sbjct: 207 VLDPSLEEEEILTARLSIGMN-SEGKICAMQKGGKGSLSREDISKAINIAEEKTPELLQH 265

Query: 218 ISKLA 222
           +  + 
Sbjct: 266 LENIR 270


>gi|332075520|gb|EGI85988.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17545]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVSVWVKQID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|323445709|gb|EGB02186.1| hypothetical protein AURANDRAFT_69118 [Aureococcus anophagefferens]
          Length = 268

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTE 655
                     R +     +   V  +  G+V +V  +G FV    G   GLVH+S+LS E
Sbjct: 77  RPHTHAPPRRRAVALRAGEFVPVGAVRAGEVTRVESYGCFVKLDDGGASGLVHVSELSHE 136

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           R A+  DVV  G  V VK+L   + G+   S+K VDQ TG
Sbjct: 137 R-ARPEDVVAVGQPVLVKVLAPREPGRTSFSLKAVDQRTG 175


>gi|15900789|ref|NP_345393.1| transcriptional regulator, putative [Streptococcus pneumoniae
           TIGR4]
 gi|111657235|ref|ZP_01408005.1| hypothetical protein SpneT_02001548 [Streptococcus pneumoniae
           TIGR4]
 gi|303254587|ref|ZP_07340690.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS455]
 gi|303259816|ref|ZP_07345791.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262231|ref|ZP_07348175.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264652|ref|ZP_07350570.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS397]
 gi|303267582|ref|ZP_07353426.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS457]
 gi|303269819|ref|ZP_07355566.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS458]
 gi|14972382|gb|AAK75033.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4]
 gi|301801754|emb|CBW34464.1| putative transcription accessory protein [Streptococcus pneumoniae
           INV200]
 gi|302598439|gb|EFL65482.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS455]
 gi|302636554|gb|EFL67045.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639021|gb|EFL69481.1| transcriptional regulator, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302640646|gb|EFL71046.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS458]
 gi|302642880|gb|EFL73183.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS457]
 gi|302645739|gb|EFL75968.1| transcriptional regulator, putative [Streptococcus pneumoniae
           BS397]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|147921588|ref|YP_684595.1| translation initiation factor IF-2 subunit alpha [uncultured
           methanogenic archaeon RC-I]
 gi|56295565|emb|CAH04807.1| translation initiation factor 2, subunit alpha [uncultured
           archaeon]
 gi|110619991|emb|CAJ35269.1| translation initiation factor 2, alpha subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 267

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   ++    V KV+DFGAFV       ++GL+HIS++++  V    D V+EG  +  K+
Sbjct: 6   PNPGELVVCTVTKVVDFGAFVALDEYDNKEGLIHISEVASGWVKYIRDHVREGQKIVCKV 65

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKPIV 699
           LD +  RG I LS K V+++  +  +
Sbjct: 66  LDVNPKRGHIDLSFKDVNEHQRRETI 91


>gi|332879252|ref|ZP_08446949.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682672|gb|EGJ55572.1| Tex-like protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 716

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      D  +   +  G +  + +FG FV       GLVHISQL+   V+  ++VV   
Sbjct: 634 DPNVHTMDDLKEGMVLPGIISNITNFGCFVDIGVHEKGLVHISQLADRYVSDPNEVVSLH 693

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V V++L  D +R +I LS+K
Sbjct: 694 QQVNVRVLQVDKERKRIALSLK 715


>gi|332289032|ref|YP_004419884.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
 gi|330431928|gb|AEC16987.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
          Length = 763

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-V 670
                 +   I +G V  V +FGAFV     +DGLVHIS LS + V    DVVK GD   
Sbjct: 642 EQISDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHDVVKTGDIVK 701

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              L    DR +I L+M+ +D+ T +P
Sbjct: 702 VKVLEVEVDRRRIALTMR-LDEQTNRP 727


>gi|255072317|ref|XP_002499833.1| predicted protein [Micromonas sp. RCC299]
 gi|226515095|gb|ACO61091.1| predicted protein [Micromonas sp. RCC299]
          Length = 876

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS-------ITDVPEVNKIYKGQVV 628
            I          D+   +K   +      AAR+  ++            +    ++G+V 
Sbjct: 207 RISLTMKPPPTADELEAIKAKEAEREAKFAARKAQQAEARAAAEKVKAIKKGTAFEGEVK 266

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            V  FGAFV      +GLVH++++S +     +D  K GD V VK+LD D   K+KL+MK
Sbjct: 267 SVQPFGAFVEIMEGVEGLVHVTEMSDDYNVDVADFCKVGDKVSVKVLDVDGA-KVKLTMK 325

Query: 689 V 689
            
Sbjct: 326 D 326



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            +V ++G FV F    DGLVHIS+L    V   +DVV     V V +   D ++G+I L+
Sbjct: 152 KRVQEYGCFVDFGAKNDGLVHISELKDGFVENVTDVVSADQAVTVWVKSIDAEKGRISLT 211

Query: 687 MK 688
           MK
Sbjct: 212 MK 213


>gi|49484289|ref|YP_041513.1| RNA binding protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257428860|ref|ZP_05605254.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431470|ref|ZP_05607843.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434180|ref|ZP_05610530.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|282904729|ref|ZP_06312603.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906408|ref|ZP_06314259.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909376|ref|ZP_06317191.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282920239|ref|ZP_06327963.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925451|ref|ZP_06333105.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958842|ref|ZP_06376287.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293508982|ref|ZP_06667769.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293547494|ref|ZP_06672169.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428650|ref|ZP_06821276.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297589873|ref|ZP_06948513.1| YhgF like protein [Staphylococcus aureus subsp. aureus MN8]
 gi|49242418|emb|CAG41132.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257274202|gb|EEV05719.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277711|gb|EEV08381.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280819|gb|EEV10964.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|282312852|gb|EFB43253.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316099|gb|EFB46480.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282326646|gb|EFB56944.1| S1 domain RNA-binding protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330358|gb|EFB59876.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282594762|gb|EFB99739.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|283789560|gb|EFC28383.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919614|gb|EFD96687.1| S1 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094686|gb|EFE24958.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|295127320|gb|EFG56960.1| RNA-binding S1 domain-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297577001|gb|EFH95715.1| YhgF like protein [Staphylococcus aureus subsp. aureus MN8]
 gi|312437523|gb|ADQ76594.1| YhgF like protein [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193222|gb|EFU23620.1| putative RNA binding protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 716

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIHSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|121533952|ref|ZP_01665778.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307463|gb|EAX48379.1| RNA binding S1 domain protein [Thermosinus carboxydivorans Nor1]
          Length = 723

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            + KG V  V DFG FV      +GL+H S+LS +      D+V  GD V   +L  D+ 
Sbjct: 651 TLVKGTVHNVTDFGVFVDIGLKTNGLIHRSELSHKPFRHPLDIVAVGDIVECIVLSVDEA 710

Query: 680 RGKIKLSMKVVDQ 692
           R +I LS+K   +
Sbjct: 711 RSRIALSLKQAQK 723


>gi|56750845|ref|YP_171546.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
 gi|81299505|ref|YP_399713.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 7942]
 gi|59802964|sp|P46228|RS1_SYNP6 RecName: Full=30S ribosomal protein S1
 gi|56685804|dbj|BAD79026.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
 gi|81168386|gb|ABB56726.1| SSU ribosomal protein S1P [Synechococcus elongatus PCC 7942]
          Length = 307

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S + +     V    D V V ++D D +RG+I LS
Sbjct: 205 RGIKPYGAFIDI-GGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLS 263

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 264 TKQLEPEPG 272



 Score = 37.6 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
               G V  +   GA +         + + ++S  RV    +V++  +     +L D ++
Sbjct: 33  DTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDENE 92

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 93  DGQLTLSIRRIE 104


>gi|237739143|ref|ZP_04569624.1| transcription accessory protein [Fusobacterium sp. 2_1_31]
 gi|229423743|gb|EEO38790.1| transcription accessory protein [Fusobacterium sp. 2_1_31]
          Length = 722

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D 
Sbjct: 648 EVGMELEGTVRNVVKFGAFVDIGLKNDALLHISEISNKYIDDPSKVLAVGQIIKVRIKDV 707

Query: 678 D-DRGKIKLSMKV 689
           D DRG++ L+ K 
Sbjct: 708 DKDRGRVGLTKKE 720


>gi|82751666|ref|YP_417407.1| hypothetical protein SAB1948c [Staphylococcus aureus RF122]
 gi|82657197|emb|CAI81637.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 716

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSTLSKKFVKNPMDIVSVGDIVDVWIYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|282917411|ref|ZP_06325164.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282318613|gb|EFB48970.1| S1 RNA-binding domain-containing protein [Staphylococcus aureus
           subsp. aureus D139]
          Length = 716

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTG-AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
             D++   + +G   +  I++       +  D+    I  S +  IE  +E ++      
Sbjct: 592 DMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLKEGMK------ 645

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
                  G V  V+DFGAFV     +DGLVH+S+LS + V    D+V  GD V V +   
Sbjct: 646 -----LSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSIGDIVDVWIYSI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K+ L+M
Sbjct: 701 DKNKDKVSLTM 711


>gi|255075577|ref|XP_002501463.1| predicted protein [Micromonas sp. RCC299]
 gi|226516727|gb|ACO62721.1| predicted protein [Micromonas sp. RCC299]
          Length = 1170

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR---DGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            PEV  IY+G+V  VMDFG FV         +GLVH+S +S+++     D V+   +VWV
Sbjct: 195 EPEVGAIYRGRVTNVMDFGCFVELTEFSRKFEGLVHVSMISSQKGVNARDQVQRDQSVWV 254

Query: 673 KLLDFDDRGKIKLSMKVVDQNT 694
           K+       ++ LSM+ V+Q+T
Sbjct: 255 KVTTR-SATRMALSMRDVNQST 275


>gi|148264978|ref|YP_001231684.1| 30S ribosomal protein S1 [Geobacter uraniireducens Rf4]
 gi|146398478|gb|ABQ27111.1| SSU ribosomal protein S1P [Geobacter uraniireducens Rf4]
          Length = 403

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +  F P  +I     +   + IG           + G  +         ++  S+ E E 
Sbjct: 139 VRAFCPYSQISLRRVENAADYIGKRLSFRISEYGENGRNI--------VLSHRSVLEEER 190

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            R+       + E   I +G V  + DFGAF+   G+ +GL+ IS++   RV    +V+ 
Sbjct: 191 LRQKEEQKETLKEG-MIVQGTVTSLRDFGAFISI-GSVEGLLPISEIGWSRVKDIHEVLS 248

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  V V +   D +  KI  S+K    +  
Sbjct: 249 VGQNVEVVIKQIDWENDKISFSLKDTLADPW 279



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 17/141 (12%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
              I  V+ +G       VE    +++ ++D        +LA      +    +      
Sbjct: 240 VKDIHEVLSVGQN-----VEVVIKQIDWENDKISFSLKDTLA------DPWDKVALTYPE 288

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
              + G+V ++  FGAFV      DGL+HIS+L + +R+    +V+KEG+TV VK+   D
Sbjct: 289 GSFHTGRVARLAQFGAFVTLDSGVDGLIHISKLGAGKRINHPREVIKEGETVEVKVESVD 348

Query: 679 -DRGKIKLSM----KVVDQNT 694
            +  ++ LS+    +  +Q  
Sbjct: 349 RENRRLSLSLAEVSRAAEQEE 369


>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
           Brener]
 gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
          Length = 252

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 13/227 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR  +  R ++ + G +    G    + G       V  G RE    +
Sbjct: 5   KEYINPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASV-YGPREVTNRL 63

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI---GHGRLARRAIHPVLPQTAQFP 420
           +S                  A     +  AP RR                 V+  +    
Sbjct: 64  ESKYNE--CIITCEVAIAAFAGE---KRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPN 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  E+   DGS   A +  + LAL+DA V +   V    +GL+      + + D++
Sbjct: 119 SQIHICVEVLRQDGSDKAACINAACLALVDACVAMRDIVYAQTVGLI----HAVDVVDLT 174

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            +E         +A      +++        ++  ++   +  A++ 
Sbjct: 175 TEEMRSQCPTICIAVKGHDPSSIVWMESNCRVTSEVVSRLVTVAQKS 221



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 14/165 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT----YA 69
           R + LE G++    DG      G   V A+V   R + +      L   Y E       A
Sbjct: 24  RRMTLEFGKVLG-CDGCCTVMSGLATVCASVYGPREVTNR-----LESKYNECIITCEVA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           +    G   R   R ++    +S  +    R   L S+   ++  + + V++ D      
Sbjct: 78  IAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKA- 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
              + AA  AL+ + +     V    V  I+   V++   +E + 
Sbjct: 137 -ACINAACLALVDACVAMRDIVYAQTVGLIHAVDVVDLTTEEMRS 180


>gi|294783859|ref|ZP_06749181.1| S1 RNA binding domain protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479671|gb|EFG27450.1| S1 RNA binding domain protein [Fusobacterium sp. 1_1_41FAA]
          Length = 722

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D 
Sbjct: 648 EVGMELEGTVRNVVKFGAFVDIGLKNDALLHISEISNKYIDDPSKVLAVGQIIKVRIKDV 707

Query: 678 D-DRGKIKLSMKV 689
           D DRG++ L+ K 
Sbjct: 708 DKDRGRVGLTKKE 720


>gi|332201372|gb|EGJ15442.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
          Length = 709

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|326803704|ref|YP_004321522.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650568|gb|AEA00751.1| S1 RNA binding domain protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 136

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  I  G V  +  +G F+       GLVHIS++    V    +    GD V VK++D D
Sbjct: 9   IGDILNGTVTGIQSYGLFIKLNPHCHGLVHISEVDHGFVTNLEERFSIGDQVKVKIIDID 68

Query: 679 D-RGKIKLSMKVV 690
           +   KI LS++ +
Sbjct: 69  EYTKKISLSIRAL 81


>gi|261403312|ref|YP_003247536.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           vulcanius M7]
 gi|261370305|gb|ACX73054.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           vulcanius M7]
          Length = 263

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK G  V  K+
Sbjct: 6   PEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKV 65

Query: 675 LDFDDR-GKIKLSMKVVDQNTGK 696
           L  D+R G I LS+K V +   +
Sbjct: 66  LRVDERKGHIDLSLKRVTEQQKR 88


>gi|163788766|ref|ZP_02183211.1| putative 30S ribosomal protein S1 [Flavobacteriales bacterium
           ALC-1]
 gi|159876003|gb|EDP70062.1| putative 30S ribosomal protein S1 [Flavobacteriales bacterium
           ALC-1]
          Length = 613

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+      + +   +E    K+N +    V    + +       E  + I   
Sbjct: 185 QIDVKPIRDY----DQYVNKTMEFKVVKINHEFKNIVVSHKALIEADIE--EQKKEIIGQ 238

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGLVHI+ LS  R+   +++V+    + V +LD
Sbjct: 239 LEKGQVLEGIVKNITSYGVFIDL-GGVDGLVHITDLSWSRINHPNEIVELDQKLNVVILD 297

Query: 677 FDDRG-KIKLSMKVVDQNTGKPI 698
           FD+   +I+L +K + ++  + +
Sbjct: 298 FDENKSRIQLGLKQLSKHPWEAL 320



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVK 665
           +    ++ +  +V    KG+VV + D+GAFV      +GLVH+S++S    +    D V 
Sbjct: 314 KHPWEALGEEVKVGDKVKGKVVVIADYGAFVEVEEGVEGLVHVSEMSWSTHLRSAQDFVS 373

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            GD +   +L  D +  K+ L +K +  +    I
Sbjct: 374 VGDEIDAVILTLDREDRKMSLGIKQLTPDPWTDI 407



 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    IT    V   + G V    +FG FV      DGL++IS LS  +++   S+    
Sbjct: 402 DPWTDITKKYPVGSNHTGIVRNFTNFGVFVELEEGIDGLIYISDLSWTKKIKHPSEFCNV 461

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD + V +L+ D  G+ + L  K   +N  
Sbjct: 462 GDNLDVVVLELDVEGRKLSLGHKQTTENPW 491


>gi|298480888|ref|ZP_06999083.1| S1 RNA binding domain protein [Bacteroides sp. D22]
 gi|298272911|gb|EFI14477.1| S1 RNA binding domain protein [Bacteroides sp. D22]
          Length = 710

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +VV     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EVVSIHQHVMVRVMNVDYDRKRIQLSMIGVPQD 710


>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis ER-3]
 gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 293

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT---REDEQYVDSLSGT 369
           R+DGR    +R + AQ+     + GSS    G+T  I +V  G    R  E    +  G 
Sbjct: 15  RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVH-GPAEGRRSEATGPAREGA 73

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA--------RRAIHPVLPQTAQFPY 421
             +  +    F   +  +  + GA      G  R A        R A  P L        
Sbjct: 74  VVSVAVNVAGF---SGVDRKKRGATGG---GGDRQASTDLATALRDAFQPHLHTHLYPHS 127

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           T+ +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 128 TISLHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 86/258 (33%), Gaps = 45/258 (17%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE----- 81
           S G+   + G TVV+  V      +  +   P                 G  R++     
Sbjct: 37  SSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKRGATG 96

Query: 82  -SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                +    ++  +  + +P         +   + ++V+  D   S     + A + AL
Sbjct: 97  GGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHVSVLSSDG--SLFAACINACTLAL 154

Query: 139 MLSGLPFEGPVVGAQVD--------------YING-QYVLNPRLDE---DQGSL-DLFVS 179
           + +G+P  G +    V                + G    L+P LD    ++  L  + V+
Sbjct: 155 VDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINESLDPLLDMSMPEEQELPFMTVA 214

Query: 180 GTQDAVL-MVELEANQLSEDVVLDAI---------------IFGHNECKPVIEAISKLAK 223
            T  A      ++  +  E+ +L  +                 G + CK V E ++ + K
Sbjct: 215 NTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLETMFAVGLDGCKQVREILNGVLK 274

Query: 224 MCAKEPIVIDSKDFSKLE 241
              ++ +  + +  S +E
Sbjct: 275 AAGRKVLEGEGETLSSME 292


>gi|325279173|ref|YP_004251715.1| RNA binding S1 domain-containing protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324310982|gb|ADY31535.1| RNA binding S1 domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 621

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+     GK +   V     K+N +    V    + +      ++  + I   
Sbjct: 176 QIDVKPIRDYDVYVGKTMEFKV----VKINQEFKNVVVSHKALIEAELEQQK--KDIISK 229

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV   +++V     + V +LD
Sbjct: 230 LEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVNHPNEIVTLDQKLNVVILD 288

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 289 FDDEKKRIALGLKQLTPHPW 308



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +++   +V    KG+VV + D+GAFV      +GL+H+S++S  + +    D +K 
Sbjct: 306 HPWDALSADLKVGDTVKGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMKV 365

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D D  K+ L +K +  +  + I
Sbjct: 366 GDEVEAVVLTLDRDERKMSLGIKQLKSDPWQNI 398



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  ++I +   V   +   V    +FG FV      DGL+HIS LS  ++V   ++  + 
Sbjct: 393 DPWQNIEEKYGVGTKHTATVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPAEFTQI 452

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  + V +L+ D +  ++ L  K +++N  
Sbjct: 453 GAPIEVVVLEIDKENRRLSLGHKQLEENPW 482



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
             A    +E +A  +            ++ +G V+ +      V+     DG++ +++  
Sbjct: 39  NDAVVPASEKDALTQKYAETLSKVGEKEVVEGTVISMNKREVVVNIGYKSDGIISLNEFR 98

Query: 654 TERVAKTSDVVKEGDTVWVKL-LDFDDRGKIKLSMKV 689
                     +K GD V V +    D +G++ LS K 
Sbjct: 99  Y----NPE--LKVGDKVEVYVETQEDKKGQLTLSHKQ 129


>gi|159477693|ref|XP_001696943.1| polyprotein of PSRP-7 and EF-Ts, imported to chloroplast
           [Chlamydomonas reinhardtii]
 gi|158274855|gb|EDP00635.1| polyprotein of PSRP-7 and EF-Ts, imported to chloroplast
           [Chlamydomonas reinhardtii]
          Length = 1013

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V VK+L  D ++ 
Sbjct: 67  YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 126

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 127 RVSLELK 133


>gi|53794015|gb|AAU93598.1| chloroplast polyprotein of elongation factor Ts precursor
           [Chlamydomonas reinhardtii]
          Length = 1013

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V +FGAFV+F    +GLVHIS+L++       DVV+ G  V VK+L  D ++ 
Sbjct: 67  YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 126

Query: 682 KIKLSMK 688
           ++ L +K
Sbjct: 127 RVSLELK 133


>gi|88807804|ref|ZP_01123315.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
 gi|88787843|gb|EAR18999.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
          Length = 368

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 261 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 319

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 320 TKALEPEPG 328



 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV++ G+     ++ +
Sbjct: 86  KPGDIVNGTVFALESKGAMIDIGAKTAAFMPLQEVSINRVEGLSDVLQPGEIREFFIMSE 145

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 146 ENEDGQLSLSIRRIEYQRAWE 166


>gi|58699609|ref|ZP_00374304.1| ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533874|gb|EAL58178.1| ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 148

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             +       V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G
Sbjct: 56  PWQDAESKYPVDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRG 115

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V+VK+L  D  + ++ LSMK
Sbjct: 116 QEVYVKILSIDIAKSRMSLSMK 137



 Score = 44.5 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            G  DGL+HI+ +S  RV+  S V   G T     +    +  KI L +K ++ +  + 
Sbjct: 1   MGVIDGLLHITDISWSRVSHPSAVFTCGQTIKVKIIKIDKENAKISLGVKQLEDSPWQD 59


>gi|319891932|ref|YP_004148807.1| General stress protein 13 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161628|gb|ADV05171.1| General stress protein 13 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464977|gb|ADX77130.1| S1 RNA binding domain protein [Staphylococcus pseudintermedius
           ED99]
          Length = 129

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  K +V  +  +GAFV    + +GL+HIS++  + V     ++  G TV  K++  D
Sbjct: 8   VGQHVKVRVTGIQPYGAFVETPDSTEGLIHISEIMDDYVHNLKKLLSPGQTVKAKIISID 67

Query: 679 DRGKIKLSMKVVD 691
             GK+ LS+K  D
Sbjct: 68  HNGKLNLSLKDND 80


>gi|330997899|ref|ZP_08321733.1| Tex-like protein [Paraprevotella xylaniphila YIT 11841]
 gi|329569503|gb|EGG51273.1| Tex-like protein [Paraprevotella xylaniphila YIT 11841]
          Length = 707

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +      D  +   +  G +  + +FG FV       GLVHISQL+   V+  ++VV   
Sbjct: 625 DPNVHTMDDLKEGMVLPGIISNITNFGCFVDIGVHEKGLVHISQLADRYVSDPNEVVSLH 684

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V V++L  D +R +I LS+K
Sbjct: 685 QQVNVRVLQVDKERKRIALSLK 706


>gi|237749845|ref|ZP_04580325.1| 30s ribosomal protein s1 [Helicobacter bilis ATCC 43879]
 gi|229374595|gb|EEO24986.1| 30s ribosomal protein s1 [Helicobacter bilis ATCC 43879]
          Length = 562

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +  + I D  +V  + +  V  + D+GAFV      +G +HIS++S ++ + + SD +K 
Sbjct: 276 DPWKEIKDEIKVGYVIRVTVSNIEDYGAFVDLGNDVEGFLHISEMSWDKNIKQPSDCLKV 335

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           G+ + V++++ D D  ++++S+K +    
Sbjct: 336 GEEINVEVIEIDPDNRRLRVSLKKLQDKP 364



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 583 AKVNIDDDGT--VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
             V+I  +G   V      L    AA++          +   Y+G V  V  FG FV   
Sbjct: 166 CIVDIRPNGNSIVISRKRYLDTHTAAQKENAKKILDSGLA--YEGVVKNVTKFGLFVEI- 222

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G+ DGLVH +++S           K GD V VK L+++ ++ ++ LS++ +  +  K I
Sbjct: 223 GSVDGLVHFTEISHRGPVNPEKHYKVGDKVQVKPLEYNEEKNRLSLSIRALFDDPWKEI 281



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 30/197 (15%)

Query: 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVE 579
              +  +   +  +  +   ++ +      ++ +    I +      +G   +    I E
Sbjct: 260 NEEKNRLSLSIRALFDDPWKEIKDEIKVGYVIRVTVSNIEDYGAFVDLGNDVEGFLHISE 319

Query: 580 QTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
            +  K                   + ID D      S    +     +     T   +V 
Sbjct: 320 MSWDKNIKQPSDCLKVGEEINVEVIEIDPDNRRLRVSLKKLQD----KPFVRFTKEHKVG 375

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + KG+V  + +FGAFV+  GA DGL+H      ++  K +D  K GD++ VK+   D  
Sbjct: 376 DVIKGKVATITNFGAFVNL-GAVDGLLHNEDAFWDKSKKCADEFKVGDSIEVKIDKIDTA 434

Query: 680 RGKIKLSMKVVDQNTGK 696
             KI L+ + + ++  +
Sbjct: 435 NEKISLNRRYLVESPSE 451



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEG 667
                     ++    GQV+ + DFG F+       D L+    L         D +K G
Sbjct: 449 PSEQFAKKYAIDDEISGQVIDIKDFGVFIKVENENIDALIRNEDLGNI----ARDSIKVG 504

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           DT+   L+  D +  +++LS++ + +   +
Sbjct: 505 DTIKGALVQVDRKANRVRLSVRRLQKKKER 534


>gi|85713208|ref|ZP_01044237.1| 30S ribosomal protein S1 [Idiomarina baltica OS145]
 gi|85692981|gb|EAQ30950.1| 30S ribosomal protein S1 [Idiomarina baltica OS145]
          Length = 311

 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    I +         G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 18  DPWADIANRYPEGTRLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNVHPSKVVNL 77

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            DTV V +L+ D +R +I L +K    N  + 
Sbjct: 78  DDTVEVMVLEIDEERRRISLGLKQCKPNPWEE 109



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKE 666
                           G++  + DFG F+   G  DGLVH+S +S          D  K+
Sbjct: 106 PWEEFAKNHNKGDKVSGKIKSITDFGIFIGLEGGIDGLVHLSDISWNATGEEAVRDY-KK 164

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           G+ V   ++  D +R +I L +K ++++ 
Sbjct: 165 GEEVTAVVMQVDAERERISLGIKQLEEDP 193



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I  G + +V   GA V    + +G +  + +S ERV   S  +  GD+V  + +  
Sbjct: 202 KKGSIVNGTITEVDAKGAKVELADSVEGYIRAADISRERVEDASTELSVGDSVEARFMGV 261

Query: 678 DDRGK-IKLSMKVVDQNTGKPIV 699
           D + + + LS++  D+   K  V
Sbjct: 262 DRKNRTLSLSIRAKDEVEEKEAV 284


>gi|331701848|ref|YP_004398807.1| Tex-like protein [Lactobacillus buchneri NRRL B-30929]
 gi|329129191|gb|AEB73744.1| Tex-like protein [Lactobacillus buchneri NRRL B-30929]
          Length = 722

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKIYKG 625
           IG+G   ++ I+            G          E+ A       +T    +     +G
Sbjct: 606 IGVGVATLKDII-----------KGLETPGRDLRDEMPAPLLRKDVLTMEDLKPGMKLQG 654

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFG FV     +DGLVHIS++S   V   S V   GD V V +   D DR +I+
Sbjct: 655 TVRNVVDFGVFVDIGVKQDGLVHISKMSRTFVKDPSKVASVGDIVTVWIDSVDLDRHRIQ 714

Query: 685 LSM 687
           L+M
Sbjct: 715 LTM 717


>gi|237721171|ref|ZP_04551652.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450006|gb|EEO55797.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295084558|emb|CBK66081.1| Transcriptional accessory protein [Bacteroides xylanisolvens XB1A]
          Length = 710

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERFISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +VV     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EVVSIHQHVMVRVMNVDYDRKRIQLSMIGVPQD 710


>gi|213962640|ref|ZP_03390901.1| S1 RNA binding domain protein [Capnocytophaga sputigena Capno]
 gi|213954635|gb|EEB65956.1| S1 RNA binding domain protein [Capnocytophaga sputigena Capno]
          Length = 707

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 547 GEFTPRVEIMAIPPD-QIRNVIGMGGKVIR-GIVEQTGAKV------NIDDDGTVKIASS 598
            E  P ++ MA      +  +IG    +    I +    KV      ++  +        
Sbjct: 556 PEAYPIIKQMAKDTGISVTQLIGNKQAIATIDIQKYKTDKVGELYLKDVLKELEKPGLDP 615

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A +      D   +  I  G V  +  FG FV       GLVHISQL    V+
Sbjct: 616 RTTAKAFAFDPNVKTFDDVRIGMILPGIVNNITAFGCFVDIGVKESGLVHISQLKDGYVS 675

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
             ++VVK    V VK+ + D+ R +I L+M
Sbjct: 676 DVNEVVKLHQQVQVKVTEVDELRKRISLTM 705


>gi|33239803|ref|NP_874745.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237329|gb|AAP99397.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 367

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 260 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 318

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 319 TKALEPEPG 327


>gi|320547871|ref|ZP_08042154.1| RNA binding protein [Streptococcus equinus ATCC 9812]
 gi|320447411|gb|EFW88171.1| RNA binding protein [Streptococcus equinus ATCC 9812]
          Length = 118

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G +  +  +GAFV       GL+HIS++    +     ++K G+ V V+++DFD+   K
Sbjct: 8   TGTITGIKPYGAFVALDNGTTGLIHISEIKAGYIENIYQLLKVGEKVLVQVVDFDEFTQK 67

Query: 683 IKLSMKVVDQN 693
           + LS++ +++ 
Sbjct: 68  VSLSLRTLEEE 78


>gi|255008568|ref|ZP_05280694.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313146296|ref|ZP_07808489.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313135063|gb|EFR52423.1| RNA-binding protein [Bacteroides fragilis 3_1_12]
          Length = 707

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  + +FGAFV      +GLVH+SQL+   +   ++VV     V VK+L  D +
Sbjct: 637 MVLPGIVSNITNFGAFVDIGIKENGLVHLSQLANRFITDPTEVVSIHQHVTVKVLSIDFE 696

Query: 680 RGKIKLSM 687
           R +I+L+M
Sbjct: 697 RKRIQLTM 704


>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis SLH14081]
 gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis SLH14081]
          Length = 293

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT---REDEQYVDSLSGT 369
           R+DGR    +R + AQ+     + GSS    G+T  I +V  G    R  E    +  G 
Sbjct: 15  RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVH-GPAEGRRSEATGPAREGA 73

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA--------RRAIHPVLPQTAQFPY 421
             +  +    F   +  +  + GA      G  R A        R A  P L        
Sbjct: 74  VVSVAVNVAGF---SGVDRKKRGATGG---GGDRQASTDLATALRDAFQPHLHTHLYPHS 127

Query: 422 TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           T+ +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 128 TISLHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 87/258 (33%), Gaps = 45/258 (17%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE----- 81
           S G+   + G TVV+  V      +  +   P                 G  R++     
Sbjct: 37  SSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKRGATG 96

Query: 82  -SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                +    ++  +  + +P         +   + ++V+  D   S     + A + AL
Sbjct: 97  GGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHVSVLSSDG--SLFAACINACTLAL 154

Query: 139 MLSGLPFEGPVVGAQVD--------------YING-QYVLNPRLDE---DQGSL-DLFVS 179
           + +G+P  G +    V                + G    L+P LD    ++  L  + V+
Sbjct: 155 VDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINESLDPLLDMSMPEEQELPFMTVA 214

Query: 180 GTQDAVL-MVELEANQLSEDVVLDAI---------------IFGHNECKPVIEAISKLAK 223
            T  A      ++  +  E+ +L  +                 G + CK V E ++ + K
Sbjct: 215 NTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLETMFAVGLDGCKQVREILNGVLK 274

Query: 224 MCAKEPIVIDSKDFSKLE 241
              ++ +  + + FS +E
Sbjct: 275 AAGRKVLEGEGEIFSSME 292


>gi|32307552|gb|AAP79181.1| ribosomal protein rpS1 [Bigelowiella natans]
          Length = 419

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +  +GAF++  G  +GL+HISQ+S + V    DV+  G  + V ++  D  G++ LS K 
Sbjct: 306 LKPYGAFINL-GGVNGLLHISQISHDHVTSVKDVMDVGQKLKVMIMSRDQNGRVSLSTKR 364

Query: 690 VDQNTG 695
           ++ N G
Sbjct: 365 LEPNAG 370


>gi|1279215|emb|CAA65789.1| putative ribosomal protein S1 [Bacteroides fragilis]
          Length = 431

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           G   +  S  A IEA  E  +  I    E  ++ +G V  +  +G F+   G  DGL+HI
Sbjct: 18  GIQNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYGVFIDL-GGVDGLIHI 76

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           + LS  RV+   +VV+    + V +LDFDD + +I L +K +  +  
Sbjct: 77  TDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLKQLTPHPW 123



 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVK 665
           ++   +I +   V   +  +V    +FG FV      DGL+HIS LS  ++V   S+  +
Sbjct: 207 QDPWETIEEKYPVGSKHTAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQ 266

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            G  + V++L+ D +  ++ L  K +++N  
Sbjct: 267 IGADIEVQVLEIDKENRRLSLGHKQLEENPW 297



 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               ++    +V    KG+VV + D+GAF+      +GL+H+S++S  + +    D +K 
Sbjct: 121 HPWDALDPNLQVGDKVKGKVVVMADYGAFIEIAPGVEGLIHVSEMSWSQHLRSAQDFMKV 180

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D +  K+ L +K + Q+  + I
Sbjct: 181 GDEVEAVVLTLDREERKMSLGIKQLKQDPWETI 213


>gi|34557672|ref|NP_907487.1| 30S ribosomal protein S1 [Wolinella succinogenes DSM 1740]
 gi|34483389|emb|CAE10387.1| 30S RIBOSOMAL PROTEIN S1 [Wolinella succinogenes]
          Length = 553

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G+ ++   E     + ID        S          +         +   + KG 
Sbjct: 324 IKHPGEYLKSGQEIDVEVIEIDTKKRRLRVSLKKLL----EKPFEQFMKTHKEGDVIKGA 379

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V  + DFGAF+   GA DGL+H      E+  K  +V+KEGD V VK++  D D+ ++ L
Sbjct: 380 VATLTDFGAFIRI-GAIDGLLHNEDAFWEKNGKCKEVMKEGDEVEVKIVKIDKDKERVSL 438

Query: 686 SMKVVDQNTGKP 697
           S K +  +  + 
Sbjct: 439 SRKSLIASPAED 450



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           +  + +    K +   ++     +  +DD  V             ++       + E  +
Sbjct: 145 KFMSALKEDAKNLGKTIKACIINIKPEDDTIVVSRKRFFELDNKVKK--EGAAKLLEATE 202

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
              G V K+  FG FV      +GLVH +++S +     S + +EGD V VK + +D ++
Sbjct: 203 PLPGVVKKITSFGMFVEV-DGVEGLVHYTEISYKGPVNPSKIYQEGDQVSVKAIAYDEEK 261

Query: 681 GKIKLSMKVVDQNTGKPI 698
            ++ LS+K    +  + I
Sbjct: 262 KRLSLSIKATVDDPWREI 279



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE    K++  D   V ++  SL    A            +++    G++  + DFG F+
Sbjct: 422 VEVKIVKID-KDKERVSLSRKSLIASPA-----EDFAKNHQIDDSVIGKIRDIKDFGVFI 475

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           +     D L+ I  L+  +     + +  GD +   +   D +  KI++S++ +++   K
Sbjct: 476 NLEDGIDALIRIEDLAPLK----KEELNIGDEIEGVISLIDKENNKIRVSVRRLERKKEK 531

Query: 697 P 697
            
Sbjct: 532 E 532


>gi|15668289|ref|NP_247082.1| translation initiation factor IF-2 subunit alpha
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2494298|sp|Q57581|IF2A_METJA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|1592263|gb|AAB98098.1| translation initiation factor aIF-2, subunit alpha (aif2A)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 266

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M     + PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK 
Sbjct: 1   MFIMRREFPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKV 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  V  K+L  D+R G I LS+K V +   +
Sbjct: 61  GQRVVAKVLRVDERKGHIDLSLKRVTEQQKR 91


>gi|55820707|ref|YP_139149.1| hypothetical protein stu0628 [Streptococcus thermophilus LMG 18311]
 gi|55822598|ref|YP_141039.1| hypothetical protein str0628 [Streptococcus thermophilus CNRZ1066]
 gi|116627513|ref|YP_820132.1| hypothetical protein STER_0677 [Streptococcus thermophilus LMD-9]
 gi|55736692|gb|AAV60334.1| general stress protein [Streptococcus thermophilus LMG 18311]
 gi|55738583|gb|AAV62224.1| general stress protein [Streptococcus thermophilus CNRZ1066]
 gi|116100790|gb|ABJ65936.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus thermophilus LMD-9]
 gi|312278032|gb|ADQ62689.1| Putative polyribonucleotide nucleotidyltransferase (General stress
           protein 13) [Streptococcus thermophilus ND03]
          Length = 121

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV       GL+HIS++ T  +    + +K G  V V+++D
Sbjct: 1   MKIGDKLRGVITGIKPYGAFVSLDNGTTGLIHISEIKTGYIDNIYNTLKVGQEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+   K  LS++ +++   K
Sbjct: 61  FDEFTQKASLSLRTLEEEKNK 81


>gi|227522435|ref|ZP_03952484.1| S1 domain RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227090387|gb|EEI25699.1| S1 domain RNA-binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 722

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS++S   V   S +V  GD V V +   D +R 
Sbjct: 652 LQGTVRNVVDFGAFVDIGVKQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDVNRH 711

Query: 682 KIKLSM 687
           +I+LSM
Sbjct: 712 RIQLSM 717


>gi|133872|sp|P29344|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
           Full=CS1; Flags: Precursor
 gi|18060|emb|CAA46927.1| ribosomal protein S1 [Spinacia oleracea]
 gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1 [Spinacia oleracea]
          Length = 411

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ 
Sbjct: 248 RKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQP 306

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 307 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 336


>gi|260436204|ref|ZP_05790174.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
 gi|260414078|gb|EEX07374.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
          Length = 363

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 256 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 314

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 315 TKALEPEPG 323



 Score = 38.7 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV++ G+     ++ +
Sbjct: 81  KPGDIVNGTVFALESKGAMIDIGAKTAAFMPLQEVSINRVEGLSDVLQPGEIREFFIMSE 140

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 141 ENEDGQLALSIRRIEYQRAWE 161


>gi|225432062|ref|XP_002280604.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083203|emb|CBI22839.3| unnamed protein product [Vitis vinifera]
          Length = 410

 Score = 75.7 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ 
Sbjct: 247 RKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQP 305

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V +L  D +RG++ LS K ++   G
Sbjct: 306 GDILKVMILSHDRERGRVSLSTKKLEPTPG 335


>gi|160913588|ref|ZP_02076278.1| hypothetical protein EUBDOL_00064 [Eubacterium dolichum DSM 3991]
 gi|158434049|gb|EDP12338.1| hypothetical protein EUBDOL_00064 [Eubacterium dolichum DSM 3991]
          Length = 714

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             V   ++G V  V+DFGAFV      DGLVHIS++S  R++  S++V  GD V   + +
Sbjct: 640 VHVGDCFEGVVRNVVDFGAFVDIGLHEDGLVHISKMSKGRISHPSELVSVGDIVKTWVCN 699

Query: 677 FD-DRGKIKLSM 687
            D ++ K++LS+
Sbjct: 700 IDEEKQKVQLSL 711


>gi|227513748|ref|ZP_03943797.1| S1 domain RNA-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227083067|gb|EEI18379.1| S1 domain RNA-binding protein [Lactobacillus buchneri ATCC 11577]
          Length = 722

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGLVHIS++S   V   S +V  GD V V +   D +R 
Sbjct: 652 LQGTVRNVVDFGAFVDIGVNQDGLVHISKMSKTFVRDPSKLVSVGDIVTVWIDSVDVNRH 711

Query: 682 KIKLSM 687
           +I+LSM
Sbjct: 712 RIQLSM 717


>gi|310779520|ref|YP_003967853.1| RNA binding S1 domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748843|gb|ADO83505.1| RNA binding S1 domain protein [Ilyobacter polytropus DSM 2926]
          Length = 536

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             D+I ++   G K+   I       +++D +   K +     +       + +    P 
Sbjct: 224 KVDKISDIYKTGDKLQAKI-------ISLDKE---KKSLKLSVKQLTQDPWVTADEKYPV 273

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDF 677
             +I +G+V K++ FGAFV      +GLVH+S  +  +     S+ VK GD V VK+++ 
Sbjct: 274 GTEI-EGKVTKLVSFGAFVELEEGVEGLVHLSDFTWNKKKINVSEFVKVGDIVKVKVIEM 332

Query: 678 D-DRGKIKLSMKVVDQNTG 695
           D    ++K  +K + +N  
Sbjct: 333 DKPAKRLKFGIKQLSENPW 351



 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYKGQVVKVM 631
           E+T  +  I D+  +K+ S   +E +         +    S+ +  +V  I   ++  + 
Sbjct: 396 EKTQPRYEIGDEVELKVLSFDASEKKIKGGIKQLVKSPWDSLIENYKVGDIVDRKITSIT 455

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           DFG FV      DG++H SQ S + +   SD  + G+ V  ++++ D  + ++KLS+K  
Sbjct: 456 DFGLFVEMEKGVDGMIHASQASKDFIKNLSDRFEVGEEVKAEIIEIDTGKKRVKLSIKKA 515

Query: 691 D 691
           +
Sbjct: 516 E 516



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           ++ +D   K    S  +I    +      +   +  + + +V  ++DFG  V   G  +G
Sbjct: 157 DVKEDRRGKKILVSKKDIR--LKEQGEFFNKLNLGDVMEVEVKNILDFGISVRV-GKSNG 213

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
            +HIS+LS  +V K SD+ K GD +  K++  D   K +KLS+K + Q+  
Sbjct: 214 FIHISELSWGKVDKISDIYKTGDKLQAKIISLDKEKKSLKLSVKQLTQDPW 264


>gi|164660188|ref|XP_001731217.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
 gi|159105117|gb|EDP44003.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
          Length = 253

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           VR DGR +E  R +  Q G++    GS+L   G T+ +  V  G R+    V       +
Sbjct: 20  VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVH-GPRQ----VRGRHYAGK 74

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGH---GRLARRAIHPVLPQTAQFPYTLRIVSE 428
            +  + +   P +  E       S R+        L ++A+ P +        ++ +   
Sbjct: 75  AEVNVQFEMAPFSEKERR-----SSRDTEAPVPAALIQQALLPAIRLDLLPKSSIDVHIT 129

Query: 429 ITESDG---SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK-----DGDDFIILSDIS 480
           + +SD      +      +S AL +AGV +   V G     +      +    + L D +
Sbjct: 130 VLDSDTSMLGCAAMGATAASAALAEAGVQMLGLVTGATATAISTLPSTNKAQQLWLVDPT 189

Query: 481 GDEDHLGHMDFKVAGTDS-GITAM 503
             E    H    + G  + G+T  
Sbjct: 190 HREYADSHSHLMICGLPALGMTTC 213



 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 36/156 (23%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ--DFFPLTVNYQERTYAVG 71
           RPL L+TG I   + G+ L   G T ++ +V   R ++         + V ++   ++  
Sbjct: 31  RPLYLQTGII-PSASGSTLLESGHTKIVCSVHGPRQVRGRHYAGKAEVNVQFEMAPFSEK 89

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP-----LFSKCYKNETQVIINVMQHDLESS- 125
           +      RR SR TE   + + +I +++ P     L  K       V I V+  D     
Sbjct: 90  E------RRSSRDTE-APVPAALIQQALLPAIRLDLLPKS---SIDVHITVLDSDTSMLG 139

Query: 126 -----------------PHVVSMVAASAALMLSGLP 144
                              ++ +V  + A  +S LP
Sbjct: 140 CAAMGATAASAALAEAGVQMLGLVTGATATAISTLP 175


>gi|149247299|ref|XP_001528062.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146448016|gb|EDK42404.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1863

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  +N  + G V    +           I    D   V ++++G V KV DFG FV   G
Sbjct: 1350 GKIINCKEQGKV--LMTLKESEVNGDLKILKNYDDLVVGEVFEGTVTKVTDFGVFVKLDG 1407

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
                 GL H S++S   V+  + +  EGD V VK+L  D  + ++ L MK 
Sbjct: 1408 TINISGLCHHSEISENDVSNIASLFGEGDRVKVKILKVDLGKKQLSLGMKA 1458



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKV 689
           GA V F G+    +  +++S   V   S  +K G  V VK+LD  +D+ ++ ++MK 
Sbjct: 745 GAIVSFFGSLRAFLPKTEISETFVDDASKFLKLGQIVKVKILDIKEDQKRVVVTMKQ 801



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 585  VNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
            ++ID ++  + +   +     AA +   +  D     ++ KG V  +   G +V      
Sbjct: 1262 LDIDVENNKIAVMLRNEESSAAASDKTINSVDDLSRGQVVKGFVKNIASNGVYVSLGRCV 1321

Query: 644  DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
              LV +S LS   +       K   +V  K+++  ++GK+ +++K 
Sbjct: 1322 HALVRVSDLSDSYLKDWKKFFKPAQSVIGKIINCKEQGKVLMTLKE 1367



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            R+   S  +  ++ + Y  ++VKV D    V           I+    +   K + V   
Sbjct: 1194 RDNHVSKVEDVQIGQTYPARIVKVKDSYVLVDLGDKVIASSFITDALNDYSDKLAHVFHL 1253

Query: 667  GDTVWVKLLDFD-DRGKIK 684
             + V  K+LD D +  KI 
Sbjct: 1254 NEYVAAKVLDIDVENNKIA 1272


>gi|332884082|gb|EGK04362.1| hypothetical protein HMPREF9456_01390 [Dysgonomonas mossii DSM
           22836]
          Length = 708

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D+                 +      +         G V  + +FG FV      +G
Sbjct: 603 DIIDELDKPGRDPRKGIKVFEFDPNIKTIEDLREGMTLPGIVTNITNFGCFVDVGIKENG 662

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           LVH+S+L+   V+  ++VV     V V++L  D  R +++LSMK 
Sbjct: 663 LVHVSELADRFVSDPTEVVSLHQHVEVRVLSVDISRKRVQLSMKT 707


>gi|291280464|ref|YP_003497299.1| 30S ribosomal protein S1 [Deferribacter desulfuricans SSM1]
 gi|290755166|dbj|BAI81543.1| 30S ribosomal protein S1 [Deferribacter desulfuricans SSM1]
          Length = 566

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE + I KG++  + DFG FV F    DGL+    +S  E +   ++  K GD V  K+L
Sbjct: 368 PEGSAI-KGKIKNITDFGLFVDFGSFIDGLIRKEDISWTEEIEDLNERFKVGDEVEAKIL 426

Query: 676 DFDD-RGKIKLSMKVVDQNTGKPI 698
             D+ R ++ L +K +++N  K I
Sbjct: 427 KIDEKRERVSLGIKQLEKNPWKEI 450



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 10/180 (5%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           ++ A ++ K   + IL ++ K        +  F P    M     Q  +   +G      
Sbjct: 106 VLEAHEKGKYIPVKILEKVEKGFKVVFKTVEGFIPD-GHMEYMHKQRDDEYYIGKVFNVK 164

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I      ++N  D   +      + E+  A E  +   +  +V  + KG+V  + ++G F
Sbjct: 165 I-----LRINKRDKSFLASRKIYMQEV--AEEEKKHFFETAKVGDLVKGRVKSIKNYGVF 217

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
           V      D  +    +S  RV   +  ++  D V   +++ D    K+++S+K   ++  
Sbjct: 218 VDLGP-VDAFLKRENISWGRVRHPNQFLEIDDKVEGVIINLDPENQKVEISIKDKTEDPW 276



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                 P+   I KGQVV++ D    ++F    +G  +      + +      VK GD V
Sbjct: 21  EQSLATPQKGAIVKGQVVQITDSHVLINFGYKSEGFAN----KEDFLEDGELTVKVGDEV 76

Query: 671 WVKLLDFDDRG-KIKLSMKVVDQ 692
            V ++     G +I LS +V+DQ
Sbjct: 77  EVMVVGITGGGARIWLSKRVLDQ 99



 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +   + I  +    K+ +  V  V      V       G++   +L   RV    DV K 
Sbjct: 444 KNPWKEIDKILPKGKVVEAPVTFVGKDYVEVELPRGIKGVIEARELDENRVL-PEDVAKV 502

Query: 667 GDTVWVKLLDFDDR-GKIKLSMK 688
           GDT+   ++  + +  K+ LS K
Sbjct: 503 GDTLKAVVIGHNAKEKKVYLSRK 525



 Score = 38.7 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNK 621
               +  G V      + IDD     I +             +   +   S+    +  +
Sbjct: 228 KRENISWGRVRHPNQFLEIDDKVEGVIINLDPENQKVEISIKDKTEDPWLSVDKKYKKGE 287

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
              GQ+V  +  G  +      DG +   +LS  + +     +   D V  ++LD D + 
Sbjct: 288 KASGQIVARVRRGYILEMEPGIDGFLPDEELSWLKKSNVK--LNVKDVVEGQVLDIDQKN 345

Query: 681 GKIKLSMKVVDQNTG 695
            K+ +S+K++  N  
Sbjct: 346 KKVVISLKLLTDNPW 360


>gi|253567905|ref|ZP_04845316.1| RNA-binding protein [Bacteroides sp. 1_1_6]
 gi|251841978|gb|EES70058.1| RNA-binding protein [Bacteroides sp. 1_1_6]
          Length = 710

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++V     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EIVSIHQHVMVRVMNVDTDRKRIQLSMIGVQQD 710


>gi|225854413|ref|YP_002735925.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
 gi|225723646|gb|ACO19499.1| S1 RNA binding domain protein [Streptococcus pneumoniae JJA]
          Length = 709

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 18/230 (7%)

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
            +LS ++G    +     K    +  IT+     K+  +       A    +      + 
Sbjct: 487 ALLSHVAGLNKAISENIVKYREEEGKITSRSQIKKVPRLGAKAFEQAAGFLRIPESSNIL 546

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI-VEQTGAKVNIDDDGT 592
           + + V  E+   + E   R+         I+++       ++ + V++   ++++  +  
Sbjct: 547 DNTGVHPENYAAVKELFKRL--------DIKDLNEEAQSKLKSLSVKEMAQELDLGPETL 598

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARD 644
             I +  L      R+   +     +V  I         +G V  V+DFGAFV      D
Sbjct: 599 KDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGVVRNVVDFGAFVDIGIHED 658

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           GL+HIS +S + +   S VV  GD V V +   D +R K+ LS+   ++ 
Sbjct: 659 GLIHISHMSRKFIKHPSQVVAVGDLVSVWVKQIDTEREKVNLSLLAPNET 708


>gi|29346648|ref|NP_810151.1| RNA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338545|gb|AAO76345.1| putative RNA binding protein with S1 RNA-binding domain
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 724

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 633 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPT 691

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++V     V V++++ D DR +I+LSM  V Q+
Sbjct: 692 EIVSIHQHVMVRVMNVDTDRKRIQLSMIGVQQD 724


>gi|302780185|ref|XP_002971867.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
 gi|302781232|ref|XP_002972390.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
 gi|300159857|gb|EFJ26476.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
 gi|300160166|gb|EFJ26784.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
          Length = 297

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAK 659
             + +        ++  +  GQV  ++D+GAFV            GLVH+ ++S + V  
Sbjct: 86  ERKALWSQFGSKIQIGNVLDGQVTGIVDYGAFVDIRYADGTYPAVGLVHVKEISWDTVTN 145

Query: 660 TSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
             DV+  G  V VK+   D+   ++ LS++ ++ + 
Sbjct: 146 PRDVLSVGQDVKVKVTGIDEESMRLALSIRQLEPDP 181


>gi|307709284|ref|ZP_07645742.1| protein tex [Streptococcus mitis SK564]
 gi|307619867|gb|EFN98985.1| protein tex [Streptococcus mitis SK564]
          Length = 709

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G V  V+DFGAF+      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGQKLEGVVRNVVDFGAFIDIGIHEDGLIHISHMSCKFIKHPSQVVSVGDLVTVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|298387627|ref|ZP_06997178.1| S1 RNA binding domain protein [Bacteroides sp. 1_1_14]
 gi|298259483|gb|EFI02356.1| S1 RNA binding domain protein [Bacteroides sp. 1_1_14]
          Length = 710

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G V  + +FGAFV      +GLVH+SQL+   ++  +++V     V V++++ D D
Sbjct: 637 MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPTEIVSIHQHVMVRVMNVDTD 696

Query: 680 RGKIKLSMKVVDQN 693
           R +I+LSM  V Q+
Sbjct: 697 RKRIQLSMIGVQQD 710


>gi|255635364|gb|ACU18035.1| unknown [Glycine max]
          Length = 412

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV   S V++ GD + V +L  D
Sbjct: 261 IGSVVTGSVQSLKPYGAFIDI-GGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHD 319

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +RG++ LS K ++   G
Sbjct: 320 RERGRVSLSTKKLEPTPG 337


>gi|148238851|ref|YP_001224238.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
 gi|147847390|emb|CAK22941.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
          Length = 367

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 260 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 318

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 319 TKALEPEPG 327



 Score = 39.5 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV++ G+     ++ +
Sbjct: 85  KPGDIVNGTVFALESKGAMIDIGAKTAAFMPLQEVSINRVEGLSDVLQPGEIREFFIMSE 144

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 145 ENEDGQLSLSIRRIEYQRAWE 165


>gi|91069895|gb|ABE10824.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
           clone ASNC2150]
          Length = 363

 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 254 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLS 312

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 313 TKALEPEPG 321


>gi|291288842|ref|YP_003505658.1| hydroxymethylbutenyl pyrophosphate reductase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290886002|gb|ADD69702.1| hydroxymethylbutenyl pyrophosphate reductase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 843

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           G  + IDD+   K       +       +   T  PE + I KG +  + DFG FV F  
Sbjct: 615 GKIIGIDDE---KKKLIVSLKSIQENPWVTLKTKHPEGSAI-KGTIKSITDFGIFVDFGE 670

Query: 642 ARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             DGL+    +S  +      ++ KEGD +  K+L  D ++ +I L +K ++ N  + I
Sbjct: 671 FLDGLIRKKDISWTDEPENLDELYKEGDEIEAKVLKIDAEKERISLGVKQLETNPWREI 729



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +      E  +I KG V  +  +GAF++F GA DG +  + ++   V   +  ++EG
Sbjct: 468 KEKKEFFSQIEEGQILKGSVKTIKHYGAFMNF-GAVDGFLRKNNIAWGVVKHPNQYIEEG 526

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           D + VK+L+ D +  K+++ +K + ++  
Sbjct: 527 DELEVKILNIDFEEEKLEVGLKQMQEDPW 555



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +VI  + E + + +N +D   +        ++E    M+      PE N I +G V ++ 
Sbjct: 269 EVIEFLKEVSMSSINNNDGDNM--------QMEDFEAMLEESFQQPEKNSIVQGTVAQIN 320

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVV 690
           +    V+     +G+V     S E +      +K GD V V  L      G +KLS K +
Sbjct: 321 ENDVLVNIGFKTEGVVP----SAEFMKDGEITIKVGDEVDVLFLGIAGGGGYVKLSRKAI 376

Query: 691 DQNT 694
           ++  
Sbjct: 377 EKEA 380



 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           +E    K++ + +  + +    L          R I  +    K+ + +V+ V   G  V
Sbjct: 700 IEAKVLKIDAEKE-RISLGVKQLETN-----PWREIGKLLPNGKVVEVKVLAVSKEGLEV 753

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
                  G +  ++L  E+V   +D    GDT+   +   D R  KI LS++   Q++ K
Sbjct: 754 ELPRDLIGFIPDNELDVEKVD-PTDKFAVGDTIKAVVFRNDAREKKILLSIRRYMQDSEK 812



 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK--------- 572
           +  K+ R  + +   +++     +  EF  ++E   I    ++ +   G           
Sbjct: 446 KANKKQRSFLASRKLQMIQSIEKEKKEFFSQIEEGQILKGSVKTIKHYGAFMNFGAVDGF 505

Query: 573 -----VIRGIVEQTGAKVNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVN 620
                +  G+V+     +   D+  VKI +    E        +   +   S  D     
Sbjct: 506 LRKNNIAWGVVKHPNQYIEEGDELEVKILNIDFEEEKLEVGLKQMQEDPWDSAYDKYPEG 565

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
               G VV   + G  +      DG + + ++S  + A+ +  ++  D V  K++  DD 
Sbjct: 566 GTVAGTVVARKNKGFVMEIEQGIDGFIPLEEISWLKNARIA--IEPKDAVEGKIIGIDDE 623

Query: 680 RGKIKLSMKVVDQNTG 695
           + K+ +S+K + +N  
Sbjct: 624 KKKLIVSLKSIQENPW 639


>gi|162455512|ref|YP_001617879.1| hypothetical protein sce7230 [Sorangium cellulosum 'So ce 56']
 gi|161166094|emb|CAN97399.1| rpsA3 [Sorangium cellulosum 'So ce 56']
          Length = 683

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLV 647
           D  V        E   AR    +     E   ++KG V KV+ +G FV     G  +GLV
Sbjct: 377 DIVVSRRKMLEEESRKARTEALTSI---EPGSLHKGIVRKVVAWGVFVALPDAGGVEGLV 433

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           H+S+ S +R AK +D+ K G  + VK+L  DD+GK+ LS K    +  
Sbjct: 434 HMSEASHDRGAKLADLFKPGAEIDVKVLRVDDKGKLWLSRKAATVDPW 481



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           +DD G + ++        A  +   ++ +   V   +KG+V ++  FGAF+      DGL
Sbjct: 463 VDDKGKLWLSRK-----AATVDPWDAVKEKYAVGTRHKGKVARLQPFGAFIELEPGIDGL 517

Query: 647 VHISQLSTERVAKTSD 662
           +H + LS + +   ++
Sbjct: 518 IHTADLSMKPIQHPNE 533


>gi|78212018|ref|YP_380797.1| 30S ribosomal protein S1 [Synechococcus sp. CC9605]
 gi|78196477|gb|ABB34242.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 386

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 279 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 337

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 338 TKALEPEPG 346



 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           +   I  G V  +   GA +         + + ++S  RV   SDV++ G+     ++ +
Sbjct: 104 KPGDIVNGTVFALESKGAMIDIGAKTAAFMPLQEVSINRVEGLSDVLQPGEIREFFIMSE 163

Query: 677 FDDRGKIKLSMKVVD-QNTGK 696
            ++ G++ LS++ ++ Q   +
Sbjct: 164 ENEDGQLALSIRRIEYQRAWE 184


>gi|237741053|ref|ZP_04571534.1| transcription accessory protein [Fusobacterium sp. 4_1_13]
 gi|229431097|gb|EEO41309.1| transcription accessory protein [Fusobacterium sp. 4_1_13]
          Length = 720

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + +K+ D 
Sbjct: 648 QVGMELEGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKIKIKDV 707

Query: 678 D-DRGKIKLSMK 688
           D DRG++ L+ K
Sbjct: 708 DKDRGRVGLTRK 719


>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
           DSM 5348]
 gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
           5348]
          Length = 280

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 101/277 (36%), Gaps = 39/277 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  K     +L++  R DGR     R +S  +G  ++  GS+L   GDT  +  V +   
Sbjct: 13  LIKKESIIALLERGTRSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKV--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
           EDE Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 71  EDEPYPDT---PNQGNLVVNAELLPLAY-ETFEPGPPDENAIELSRVVDRSLRDSKAVDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD------------------- 450
             ++ +  +  +T+ +   + +  G+   A    +  AL D                   
Sbjct: 127 SGLVIEPGKKVWTVWVDISVLDYGGNVLDACTIAAVAALYDAKLPKVVRENDNIIIQKEE 186

Query: 451 --AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
               +PI  PV  +++  +       ++ D   +E+ +       +   SG         
Sbjct: 187 KVTPLPIKYPVVTVSVAKIGK----FLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSG 242

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
            G  S+  + +A   A      +L E+  ++   + +
Sbjct: 243 EGSFSQQEVEVAEGMASATSQKLLEELKSLIGIGKGE 279



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 91/244 (37%), Gaps = 45/244 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQ-DFFPLTVNYQERTYAVG 71
           RPL +  G  A+++DG+ L   G+T VLA V V +        +   L VN +    A  
Sbjct: 38  RPLSITLG-YAKKADGSALVKLGDTTVLAGVKVEEDEPYPDTPNQGNLVVNAELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIR---PLFSKCYKNE-------TQVIINVMQHD 121
               G       P EN I +SR++DRS+R    +       E         V I+V+ + 
Sbjct: 97  TFEPGP------PDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVWVDISVLDYG 150

Query: 122 LESSPHVVSMVAASAALM---------------------LSGLPFEGPVVGAQVDYINGQ 160
                     +AA AAL                      ++ LP + PVV   V  I   
Sbjct: 151 GNVL--DACTIAAVAALYDAKLPKVVRENDNIIIQKEEKVTPLPIKYPVVTVSVAKIGKF 208

Query: 161 YVLNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
            V++P L+E+      +      + + V + +      S+  V  A        + ++E 
Sbjct: 209 LVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSGEGSFSQQEVEVAEGMASATSQKLLEE 268

Query: 218 ISKL 221
           +  L
Sbjct: 269 LKSL 272


>gi|298372981|ref|ZP_06982971.1| S1 RNA binding domain protein [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275885|gb|EFI17436.1| S1 RNA binding domain protein [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 704

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FGAFV       GL+HISQLS  R+   +DVV     V V +L+ D +R +I
Sbjct: 640 GIVTNITKFGAFVDIGIHLSGLIHISQLSANRINDPTDVVHINQHVTVTVLEVDTERKRI 699

Query: 684 KLSM 687
            LS+
Sbjct: 700 ALSL 703


>gi|257388919|ref|YP_003178692.1| translation initiation factor IF-2 subunit alpha [Halomicrobium
           mukohataei DSM 12286]
 gi|257171226|gb|ACV48985.1| translation initiation factor 2, alpha subunit [Halomicrobium
           mukohataei DSM 12286]
          Length = 277

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++  G++ ++ DFG FV      D  GL HIS++++  +    D V EG TV VK+
Sbjct: 7   PESGELAVGKIDEIEDFGVFVDLEEYEDKRGLCHISEVASGWIKNVRDHVNEGQTVVVKV 66

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKP 697
           L+ D+   +I LS+K V+ +  K 
Sbjct: 67  LEIDEDAQQINLSIKDVNDHQRKE 90


>gi|226509759|ref|NP_001151317.1| RNA binding S1 [Zea mays]
 gi|195645792|gb|ACG42364.1| RNA binding S1 [Zea mays]
          Length = 366

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVV 664
             + +   ++  IY G V  V  +GAFVH           GLVHIS++S + V    D +
Sbjct: 162 WSTYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFL 221

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            EGD V V +++ D  + +I LS++ ++++ 
Sbjct: 222 NEGDAVKVIVVNIDMTKSRIALSIRQLEEDP 252


>gi|256846632|ref|ZP_05552088.1| transcriptional accessory protein [Fusobacterium sp. 3_1_36A2]
 gi|256717852|gb|EEU31409.1| transcriptional accessory protein [Fusobacterium sp. 3_1_36A2]
          Length = 721

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + +K+ D 
Sbjct: 649 QVGMELEGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKIKIKDV 708

Query: 678 D-DRGKIKLSMK 688
           D DRG++ L+ K
Sbjct: 709 DKDRGRVGLTRK 720


>gi|78778703|ref|YP_396815.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9312]
 gi|78712202|gb|ABB49379.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
          Length = 366

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 257 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLS 315

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 316 TKALEPEPG 324


>gi|294784341|ref|ZP_06749632.1| S1 RNA binding domain protein [Fusobacterium sp. 3_1_27]
 gi|294487913|gb|EFG35268.1| S1 RNA binding domain protein [Fusobacterium sp. 3_1_27]
          Length = 721

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+ FGAF+      D L+H+S++S + +   S V+  G  + +K+ D 
Sbjct: 649 QVGMELEGTVRNVVKFGAFIDIGLKNDALLHVSEISDKYIDDPSKVLSVGQIIKIKIKDV 708

Query: 678 D-DRGKIKLSMK 688
           D DRG++ L+ K
Sbjct: 709 DKDRGRVGLTRK 720


>gi|295099336|emb|CBK88425.1| Transcriptional accessory protein [Eubacterium cylindroides T2-87]
          Length = 713

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            ++   +G V  V+DFG FV      DGL+HISQ++  ++   S++V  GD + V +   
Sbjct: 641 HIHDKLQGTVRNVVDFGVFVDIGLHEDGLIHISQMADHKIGHPSEMVSVGDIIDVWVYKI 700

Query: 678 D-DRGKIKLSM 687
           D ++ K++L+M
Sbjct: 701 DEEKHKVQLTM 711


>gi|254415806|ref|ZP_05029564.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177512|gb|EDX72518.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 323

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S + +     V    D + V ++D D +RG+I LS
Sbjct: 205 RGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLS 263

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 264 TKQLEPEPG 272


>gi|332686064|ref|YP_004455838.1| general stress protein [Melissococcus plutonius ATCC 35311]
 gi|332370073|dbj|BAK21029.1| general stress protein [Melissococcus plutonius ATCC 35311]
          Length = 132

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         ++  I  G +  V  +GAFV       GL+H+S++ T        ++  G
Sbjct: 4   KKNEGEKMNYKIGMILNGMITGVQPYGAFVSLDSKTQGLIHVSEIQTGYTQNIDSLLGIG 63

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQN 693
             V V+++D D+   KI LS++ +++ 
Sbjct: 64  QKVIVQIIDIDEYSKKISLSLRTLEEQ 90


>gi|296125740|ref|YP_003632992.1| RNA binding S1 domain protein [Brachyspira murdochii DSM 12563]
 gi|296017556|gb|ADG70793.1| RNA binding S1 domain protein [Brachyspira murdochii DSM 12563]
          Length = 554

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 115/323 (35%), Gaps = 30/323 (9%)

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           E    G   R E     +    I  ++       Y +   SEI   D   S         
Sbjct: 49  ESKSEGKIKRNEFDKEPIIGEEIEAIVSGEDDKGYVILSKSEI---DKRKSQE------- 98

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIIL-----SDISGDEDHLGHMDFKVAGTDSGIT 501
            L+D  V  +  V G+   ++K G    I+        S  +   G  +    G +    
Sbjct: 99  -LIDNAVKNNSTVTGVVKEVIKGGFKVSIMGHQAFCPFSQIDIARGIKETDYIGNEYEFR 157

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE------- 554
            ++ + +   +S   ++   Q A         + + +++     + +F   +E       
Sbjct: 158 VIKKNGRDVVVSRRALLEETQNASIESFLNNLKENDIINGKVKNIEKFGAFIEITPGFDG 217

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            +AIP      VI     +I    E+    ++ID +           +     +      
Sbjct: 218 FLAIPNMSWDKVINPK-SIISKGEERMFKVLHIDKENKKVDLGIKQLD----EDPWGKFV 272

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVK 673
           +   +  + +G+V  V  FGAFV      +GLVH+S LS    V   SD VK+G  +  K
Sbjct: 273 EQYHIGDVIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECK 332

Query: 674 LLDFD-DRGKIKLSMKVVDQNTG 695
           +LD +    K+ L +K V +N  
Sbjct: 333 ILDMNAAERKLTLGLKQVKENPW 355



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DR 680
            K +V +++   A        +G+  IS       +    D +KEG+ V + ++  D D+
Sbjct: 368 VKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDK 427

Query: 681 GKIKLSMKVVDQNTGK 696
            +IKLS K   ++  +
Sbjct: 428 QRIKLSYKHTKESPWR 443



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             R          I  G V  ++D GA V      +G +H+SQ+   + +   +VVK G+
Sbjct: 441 PWRLFEKAHPQGSIVDGTVKAIVDSGAIVALEDDLEGYMHVSQVEIPKGSTLEEVVKVGE 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           T    + + +  + +I LS +   +   K
Sbjct: 501 TYPFVVREVNQSKRRISLSRREYMEAQNK 529


>gi|110667224|ref|YP_657035.1| translation initiation factor IF-2 subunit alpha [Haloquadratum
           walsbyi DSM 16790]
 gi|109624971|emb|CAJ51384.1| translation initiation factor aIF-2 alpha subunit [Haloquadratum
           walsbyi DSM 16790]
          Length = 266

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGD 668
              T  PE  +   G+V ++ DFG FV      D  GL HIS++++  +    D V+EG 
Sbjct: 1   MKYTGWPEPGEPVVGEVDEIADFGVFVDLEEYADKRGLCHISEVASGWIKNVRDHVREGQ 60

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           TV  K+LD D+  K I LS+K V+++  K  +
Sbjct: 61  TVVAKVLDVDESAKQIDLSIKDVNEHQRKETI 92


>gi|116072655|ref|ZP_01469921.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
 gi|116064542|gb|EAU70302.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
          Length = 367

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 260 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 318

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 319 TKALEPEPG 327


>gi|194689506|gb|ACF78837.1| unknown [Zea mays]
 gi|194706906|gb|ACF87537.1| unknown [Zea mays]
 gi|219887451|gb|ACL54100.1| unknown [Zea mays]
          Length = 366

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVV 664
             + +   ++  IY G V  V  +GAFVH           GLVHIS++S + V    D +
Sbjct: 162 WSTYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFL 221

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            EGD V V +++ D  + +I LS++ ++++ 
Sbjct: 222 NEGDAVKVIVVNIDMTKSRIALSIRQLEEDP 252


>gi|33866517|ref|NP_898076.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8102]
 gi|33633295|emb|CAE08500.1| 30S ribosomal protein S1, homolog A [Synechococcus sp. WH 8102]
          Length = 367

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 260 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 318

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 319 TKALEPEPG 327


>gi|224035425|gb|ACN36788.1| unknown [Zea mays]
          Length = 370

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVV 664
             + +   ++  IY G V  V  +GAFVH           GLVHIS++S + V    D +
Sbjct: 166 WSTYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFL 225

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            EGD V V +++ D  + +I LS++ ++++ 
Sbjct: 226 NEGDAVKVIVVNIDMTKSRIALSIRQLEEDP 256


>gi|206890956|ref|YP_002249561.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742894|gb|ACI21951.1| 30S ribosomal protein S1 [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 534

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +   +   +I          +G+V +V DFG FV      +GLVH+S+L        +  
Sbjct: 274 QKKADPWENIDKKYHPGMKVRGKVTRVEDFGLFVELEEGVEGLVHVSELDWIAPKHPTYY 333

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            +  + + VK+LD D +  KI LS K +     +
Sbjct: 334 AEVDEWINVKVLDIDRENRKISLSFKQLKPKPWE 367



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +    +V     G+V  + DFG FV      DGL+HIS +S  + +   S + K+
Sbjct: 364 KPWEVVAKKYKVGDRISGKVKTITDFGIFVRLPEGVDGLIHISDISWTKHIDHPSQIFKK 423

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G  V   +L  + ++ K+ L +K + ++  
Sbjct: 424 GQKVDAVILSLEPEKEKLSLGIKQLSEDPW 453



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 5/219 (2%)

Query: 483 EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           E     +  +      GI ++  D  +      I++ A ++A    + I  +    +  S
Sbjct: 67  EADEIEVFIEKIDDAQGIISLSRDRALKIKGWEILMDAYEKALPVEVKITGKTKGGVLTS 126

Query: 543 RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA- 601
              +  F P   +    P  +   +G   KV    +E          +    +  S  A 
Sbjct: 127 FYGINGFIPASLLEIRKPKNLDEYVGKTFKVKIEKIEPPKNLYGQWRNLKTSLILSRKAY 186

Query: 602 -EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            + E  +        + E  KI KG V  + ++G FV   G  DG +HIS +S  +V   
Sbjct: 187 LQEEKEKMKKEISEKIKEGLKI-KGTVKNITNYGVFVDL-GGLDGFLHISDISWGKVRHP 244

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S   + G      +L  D +  +I L  K    +  + I
Sbjct: 245 SQFFEIGSEYEFIVLKADTENERITLGYKQKKADPWENI 283



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
             I+ I +  ++ +IY  +V+K  + G FV   G  +GLV+ S++   R       VKEG
Sbjct: 452 PWIKEIPEKFKIGEIYNAKVIKKTEHGLFVDIEGIVEGLVYNSEIDKNRT------VKEG 505

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D + V ++  D ++ KI LSMK +D+N 
Sbjct: 506 DEIKVIVVKVDKEKRKIGLSMKKIDENE 533



 Score = 44.5 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E  +I KG+++ V + G  V      +G++ +++ S E +      +KE D + V +   
Sbjct: 23  ERGEIIKGKIMGVRNDGVIVDVGYKFEGIIPLNEFSEEELKN----IKEADEIEVFIEKI 78

Query: 678 DD-RGKIKLSM 687
           DD +G I LS 
Sbjct: 79  DDAQGIISLSR 89


>gi|171778158|ref|ZP_02919415.1| hypothetical protein STRINF_00251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283140|gb|EDT48564.1| hypothetical protein STRINF_00251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 118

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G +  +  +GAFV       GL+HIS++ T  +     ++K G+ V V+++DFD+   K
Sbjct: 8   TGTITGIKPYGAFVALDNGTTGLIHISEIKTGYIENIYQLLKVGEKVLVQVIDFDEFTQK 67

Query: 683 IKLSMKVVDQN 693
             LS++ +++ 
Sbjct: 68  ASLSLRTLEEE 78


>gi|78185433|ref|YP_377868.1| 30S ribosomal protein S1 [Synechococcus sp. CC9902]
 gi|78169727|gb|ABB26824.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
          Length = 367

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 260 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 318

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 319 TKALEPEPG 327


>gi|159902888|ref|YP_001550232.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
 gi|159888064|gb|ABX08278.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 371

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 264 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 322

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 323 TKALEPEPG 331


>gi|149391139|gb|ABR25587.1| 30S ribosomal protein S1 [Oryza sativa Indica Group]
          Length = 217

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ 
Sbjct: 57  RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 115

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 116 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 145


>gi|123967873|ref|YP_001008731.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
 gi|123197983|gb|ABM69624.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           AS9601]
          Length = 363

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 254 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLS 312

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 313 TKALEPEPG 321


>gi|222824189|ref|YP_002575763.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
 gi|222539411|gb|ACM64512.1| 30S ribosomal protein S1 [Campylobacter lari RM2100]
          Length = 517

 Score = 75.3 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 22/190 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + + H+   +   + +   ++ +     + + +    I        +G   +    I E 
Sbjct: 260 KDKKHLSLSIKLAMPDPWDEIKDGLEVGDTIKVTVSNIEPYGAFVDLGNDIEGFLHISEI 319

Query: 581 TGAK-----VNIDDDGTVKIASSSLAEIEAAR----------EMIRSITDVPEVNKIYKG 625
           +  K      +   +G            +  R          +         +V  + KG
Sbjct: 320 SWDKNAKNPKDYISEGQELDVEVIEINAKERRLRVSLKNLLAKPFDEFLKSHKVGDVVKG 379

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
            V  V +FGAFV      +GL+H    S  R  K  D+ K GD + VK++  D    KI 
Sbjct: 380 SVTSVTNFGAFVKIAN-LEGLLHNEDASWNRNDKCKDMYKVGDVIEVKIIKLDKENQKIS 438

Query: 685 LSMKVVDQNT 694
           LS K + ++ 
Sbjct: 439 LSTKELQKSP 448



 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 575 RGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             I+ +T     + ID +    + S      E  ++    I++V    +I +G V K+  
Sbjct: 155 NNIINKTFKVKIIKIDKEAQSIVVSRKKIVDEERKKRKEIISNVLNQEEIIEGIVKKITT 214

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVD 691
           +G FV   G  DGLVH S++S +     S +  EGD V VK++ +D   K + LS+K+  
Sbjct: 215 YGMFVDV-GGVDGLVHYSEISYKGPVNPSSLYNEGDKVPVKVIKYDKDKKHLSLSIKLAM 273

Query: 692 QNTGKPI 698
            +    I
Sbjct: 274 PDPWDEI 280



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K+   D    KI+ S+       +  ++      +VN I  G++  + DFG FV     
Sbjct: 425 VKIIKLDKENQKISLSTKEL---QKSPVQVYAQKHQVNDIISGKIRDIKDFGVFVELEEG 481

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            D L+H   L     +     +K GD +   ++  D++ 
Sbjct: 482 VDALIHKEDLGNVDFSS----LKVGDIIEALIVFIDEKK 516


>gi|124025115|ref|YP_001014231.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL1A]
 gi|123960183|gb|ABM74966.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           NATL1A]
          Length = 369

 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 262 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 320

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 321 TKALEPEPG 329


>gi|219125585|ref|XP_002183057.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405332|gb|EEC45275.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 325

 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 12/95 (12%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           +P    I  G++V++  +GAFV     R  GL+HISQ++  R+ K  D +   D VWVK+
Sbjct: 4   LPSEGSIVCGEIVRIEPYGAFVQLEECRARGLLHISQIANMRLEKVEDALSMNDRVWVKV 63

Query: 675 LDF--DD--------RGKIKLSMKVVDQN-TGKPI 698
           L+   DD        R KIKL+MK V Q+ T + I
Sbjct: 64  LEVVPDDNPDMSRPQRFKIKLTMKNVAQDGTAQEI 98


>gi|254457481|ref|ZP_05070909.1| competence protein ComEA helix-hairpin-helix region
           [Campylobacterales bacterium GD 1]
 gi|207086273|gb|EDZ63557.1| competence protein ComEA helix-hairpin-helix region
           [Campylobacterales bacterium GD 1]
          Length = 701

 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 74/175 (42%), Gaps = 15/175 (8%)

Query: 518 VMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM---AIPPDQIRNVIGMGGKVI 574
             A +QA         +     S    +  +   ++  +    I  +     +G+G + +
Sbjct: 533 KKAYEQAAGFIRIKNGKNVFDNSGIHPESYKIAKQINGLDLSTIDAETKSKELGVGKETL 592

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           + I+++   K   D    +             +E +  I  + E +    G V  + DFG
Sbjct: 593 KDIIKEL-QKPGFDPREDLPPIPF--------KEDVTDIKMLKEGS-FVSGVVRNIADFG 642

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-DRGKIKLSM 687
           AFV      DG++HIS++S +R+A   +V+     +  ++++  D ++GK+ LS+
Sbjct: 643 AFVDIGLKNDGMIHISKMSEKRIAHPLEVLSLNQYLPQIEVISVDNEKGKVSLSL 697


>gi|308802430|ref|XP_003078528.1| chloroplast polyprotein of elongation factor Ts precursor (ISS)
           [Ostreococcus tauri]
 gi|116056981|emb|CAL51408.1| chloroplast polyprotein of elongation factor Ts precursor (ISS)
           [Ostreococcus tauri]
          Length = 294

 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
             E +  ++         +  +  +G+V  +  FGAFV      +GL+H+++LS +   K
Sbjct: 162 RQEYKKQQDAKVQAVKGLKKGEKVEGEVKSIQPFGAFVEVAEGCEGLLHVTELSDDFNVK 221

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             D VK GD V V ++   +  K+KLSMK 
Sbjct: 222 VEDFVKVGDKVTVTIVGI-EGAKVKLSMKE 250



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           + G+V ++ D+G FV F   +DGLVHIS+L    V   ++VV +   V V + +  D GK
Sbjct: 76  FSGKVKRIQDYGCFVDFGAKQDGLVHISELKDGFVESVAEVVSQDQDVQVWVKEIKD-GK 134

Query: 683 IKLSMK 688
           I L+MK
Sbjct: 135 ISLTMK 140


>gi|150021498|ref|YP_001306852.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Thermosipho melanesiensis BI429]
 gi|149794019|gb|ABR31467.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosipho
           melanesiensis BI429]
          Length = 810

 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
            +V+G G  V   + E         D    K+  S    +        ++    ++ ++ 
Sbjct: 493 MDVLGEGQSVKLYLKEI--------DPTNKKLIFSLKELMP---NPWNNVEKKYKIGEVV 541

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G+V K+M +G FV+     DG VHI  +   +     D++ EGD V + + + D +  K
Sbjct: 542 SGKVKKIMPYGFFVNLEPGIDGFVHIDDVFWGKRGNIKDIISEGDFVKLVVKEIDKENKK 601

Query: 683 IKLSMKVVDQNTGKPI 698
           I+LS K V  +  + I
Sbjct: 602 IRLSYKEVKGDPWENI 617



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 568 GMGGKVIRGIVEQTGAKVNID--DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           G  G +   I E    K+ +   D    KI  S         +   +I +   +  +  G
Sbjct: 573 GKRGNIKDIISEGDFVKLVVKEIDKENKKIRLSYKEVKG---DPWENIEEKYPLGNVVTG 629

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
            V  V D G  +       G   IS++S   ++  +DV+ EG+ V   +LD D   + I+
Sbjct: 630 IVRVVFDKGVIIDIEEGISGYCPISEISWNYISHPTDVIGEGNKVKAVVLDLDKENRKIR 689

Query: 685 LSMKVVDQNTGK 696
           LS+K   +N  +
Sbjct: 690 LSIKRTVENPWE 701



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 18/187 (9%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQL-GEFTPRVEIMAIPPDQIRNVIGMGGK 572
            NI+    ++ ++    I++            +   F P+ E M I  D I +       
Sbjct: 361 RNILREKFEKGEKVIGKIISRNKGGYDVLIDNVFKAFLPKSESM-IYGDNIPD------Y 413

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
            +   +      +  +D   + +  S  A +   +E +       +   I +G V ++ D
Sbjct: 414 TMEFKI------IKFEDKRKLNVVVSRKALV---KEQVERFFKERKKGDIVEGIVKRIED 464

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           FGAFV      +GL+  S++S +      DV+ EG +V + L + D    K+  S+K + 
Sbjct: 465 FGAFVRVAEGIEGLLPNSEVSYDYEISAMDVLGEGQSVKLYLKEIDPTNKKLIFSLKELM 524

Query: 692 QNTGKPI 698
            N    +
Sbjct: 525 PNPWNNV 531


>gi|190344682|gb|EDK36410.2| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score = 75.3 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVP 617
           P  +      +  + I   +     K+   +    K                        
Sbjct: 101 PIKKESQPYPVKSEPIYSGLSLPNVKIEPQESHIKKEPKIKKESQIKDEIPGSEGYEPKL 160

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLS--TERVAKTSDVVKEGDTVWV 672
           EV +I  G V  ++ +GAF+     +    GL H+SQL+    +++  S VVK    V+V
Sbjct: 161 EVGEIVTGAVSNIVPYGAFIRLQSGKKSVVGLCHVSQLTFTGTKISSPSQVVKVDQQVFV 220

Query: 673 KLLDFDDRG---KIKLSMKVVDQNTGKP 697
           K+   + +G   +  LSM+ +DQ+TG  
Sbjct: 221 KITKIETQGRRERFSLSMRGIDQDTGLD 248


>gi|296272028|ref|YP_003654659.1| RNA binding S1 domain-containing protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096203|gb|ADG92153.1| RNA binding S1 domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 550

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     T   +V  I  G+V  + +FGAFV   G  DGL+H  + S E  AK  ++ K+G
Sbjct: 357 KPFAKFTKEHKVGDIVTGKVATLTEFGAFVTL-GDVDGLLHNEEASWEGNAKCKNLYKKG 415

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           D + VK++  D ++  I LS+K +  +  K
Sbjct: 416 DELEVKIIKIDKEKENISLSIKDITDSPAK 445



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEG 667
               I D  +V       +     +GAFV+     +GL+HIS++S  +      D++  G
Sbjct: 271 PWEEIRDELDVGDTITVTISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLG 330

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V V++++ D D+ ++++S+K + +  
Sbjct: 331 DEVNVEVIELDVDKKRLRVSLKNLQEKP 358



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E    +    E + +  G + K+  +G FV   G  DGLV+ +++S +     S+   E
Sbjct: 184 IEKDAKVAQFLENDGLINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPSNYYAE 242

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           GD V VK+L +D  +  + LS+K    N  + I
Sbjct: 243 GDEVTVKVLSYDKAKQHLSLSVKAALSNPWEEI 275



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 562 QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           + +N+   G ++   I++    K NI    ++K  + S A+   A           ++  
Sbjct: 407 KCKNLYKKGDELEVKIIKIDKEKENI--SLSIKDITDSPAKKFQA---------THKIGD 455

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I KG +  + DFG F+      DGLV     +      T+D ++ G  +   +++ D +R
Sbjct: 456 IVKGTIKDLKDFGLFIKLEDNLDGLVRNEDFAPT----TADNIEIGKEIEAVVVNIDTNR 511

Query: 681 GKIKLSMKVVDQNTGKPIV 699
            +++LS+K ++Q   + I+
Sbjct: 512 NRVRLSIKRLEQQQEREIL 530



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+    +  E N +  G +V++      V      +G +HIS+++           K G
Sbjct: 16  QMLNESFENAENNSVVDGVIVEISGENVSVDVGQKVEGRLHISEITIG----GEVKYKVG 71

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           DT+ V L       K  +S K V Q  
Sbjct: 72  DTIPVILTGI-RGEKPSISHKKVLQKE 97


>gi|188584717|ref|YP_001916262.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349404|gb|ACB83674.1| RNA binding S1 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 120

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V K  +G V  + +FGAFV   G   GLVHIS+++   V      + E + V VK+L  
Sbjct: 4   KVGKTVEGVVKGITNFGAFVELPGGETGLVHISEVADTYVKDIRKFISEEEHVKVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           D   KI LS+K V +N  K
Sbjct: 64  DGD-KIGLSLKRVRENKEK 81


>gi|189459676|ref|ZP_03008461.1| hypothetical protein BACCOP_00304 [Bacteroides coprocola DSM 17136]
 gi|189433635|gb|EDV02620.1| hypothetical protein BACCOP_00304 [Bacteroides coprocola DSM 17136]
          Length = 711

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                ++    + +++I D+ E  ++  G +  + +FG FV      +GLVHISQL+ + 
Sbjct: 617 PRQKIQVFEFDKNVQTIDDLREGMEL-PGIINNITNFGCFVDIGIKENGLVHISQLADKF 675

Query: 657 VAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           V+  + VV     V V++L  D +R +I+L+MK ++
Sbjct: 676 VSDPTTVVSMHQHVRVRVLSIDHERKRIQLTMKGLN 711


>gi|322385014|ref|ZP_08058664.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
 gi|321270924|gb|EFX53834.1| S1 RNA binding domain protein [Streptococcus cristatus ATCC 51100]
          Length = 710

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGLVHIS++S   +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLVHISKISKNFIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R KI LS+   +++
Sbjct: 694 VEREKINLSLIAPNES 709


>gi|15613094|ref|NP_241397.1| hypothetical protein BH0531 [Bacillus halodurans C-125]
 gi|10173144|dbj|BAB04250.1| BH0531 [Bacillus halodurans C-125]
          Length = 728

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFG FV     +DGLVHIS+L+   +    +VV  G+ V V + D D  +G
Sbjct: 655 LQGTVRNVVDFGVFVDIGVKQDGLVHISKLANRYIKHPLEVVTVGEIVTVWVEDVDIKKG 714

Query: 682 KIKLSM-KVVDQN 693
           +I L+M +  D+N
Sbjct: 715 RIALTMLRPEDEN 727


>gi|322818634|gb|EFZ25985.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
          Length = 252

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 13/227 (5%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR  +  R ++ + G +    G    + G       V  G RE    +
Sbjct: 5   KEYISPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASV-YGPREVTNRL 63

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI---GHGRLARRAIHPVLPQTAQFP 420
           +S                  A     +  AP RR                 V+  +    
Sbjct: 64  ESKYNE--CIITCEVAIAAFAGE---KRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPN 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  E+   DGS   A +  + LAL+DA V +   V    +GL+      + + D++
Sbjct: 119 SQIHICVEVLRQDGSDKAACINAACLALVDASVAMRDIVYAQTVGLI----HAVDVVDLT 174

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
            +E         +A      +++        ++  ++   +  A++ 
Sbjct: 175 TEEMRSQCPTICIAVKGHDPSSIVWMESNCRVTSEVISRLVTVAQKS 221



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 22/228 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT----YA 69
           R + LE G++    DG      G   V A+V   R + +      L   Y E       A
Sbjct: 24  RRMTLEFGKVLG-CDGCCTVMSGLATVCASVYGPREVTNR-----LESKYNECIITCEVA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           +    G   R   R ++    +S  +    R   L S+   ++  + + V++ D      
Sbjct: 78  IAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKA- 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDA 184
              + AA  AL+ + +     V    V  I+   V++   +E +    ++ + V G   +
Sbjct: 137 -ACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIAVKGHDPS 195

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPVIEA-----ISKLAKMCAK 227
            ++      +++ +V+   +       + V EA     + + A    K
Sbjct: 196 SIVWMESNCRVTSEVISRLVTVAQKSSEGVFEAALRGPLEEHAAAILK 243


>gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative,
           expressed [Oryza sativa Japonica Group]
 gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group]
          Length = 402

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ 
Sbjct: 242 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 300

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 301 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 330


>gi|256810767|ref|YP_003128136.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           fervens AG86]
 gi|256793967|gb|ACV24636.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           fervens AG86]
          Length = 263

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK G  V  K+
Sbjct: 6   PEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKV 65

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           L  D+ +G I LS+K V +   +
Sbjct: 66  LRVDEKKGHIDLSLKRVTEQQKR 88


>gi|310778461|ref|YP_003966794.1| Tex-like protein [Ilyobacter polytropus DSM 2926]
 gi|309747784|gb|ADO82446.1| Tex-like protein [Ilyobacter polytropus DSM 2926]
          Length = 721

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 30/181 (16%)

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMG 570
           GI+E I+  A           L +  K + ++R  L  F           +      G G
Sbjct: 568 GIAEEILEKAG--------FTLEKYRKSIGDARAALKNF---------NVEAFSEEKGYG 610

Query: 571 GKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            + +R I     G + +  ++    +  S + ++   +  +             +G V  
Sbjct: 611 KETVRDIYGALIGDRRDPREELEKPVLKSDILKMADLKPGME-----------LEGTVRN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+ FGAF+      D L+HIS++S   ++  S V+  G  + VK+ D D  R ++ L+ K
Sbjct: 660 VVKFGAFIDIGLKNDALLHISEISNTFISDPSKVLSVGQIIKVKIKDVDFQRERVTLTKK 719

Query: 689 V 689
            
Sbjct: 720 E 720


>gi|114797862|ref|YP_758926.1| 30S ribosomal protein S1 [Hyphomonas neptunium ATCC 15444]
 gi|114738036|gb|ABI76161.1| ribosomal protein S1 [Hyphomonas neptunium ATCC 15444]
          Length = 659

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I+    V+   KG V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 270 DPWDNISSRYPVSARLKGTVTNITDYGAFVELEDGVEGLIHVSEMSWTKKNVHPGKILST 329

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
              V V++LD D ++ +I L +K    N  
Sbjct: 330 SQEVDVEVLDVDSEKRRISLGLKQTMDNPW 359



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 578 VEQTGAKVNID--DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
           +  T  +V+++  D  + K   S   +          + + P   +I +G+V  + +FG 
Sbjct: 326 ILSTSQEVDVEVLDVDSEKRRISLGLKQTMDNPWSAFLAENPVGTEI-EGEVRGITEFGL 384

Query: 636 FVHFCGARDGLVHISQLSTERVAK-TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           FV      DG+VHI+ ++ ++      +   +GD V  K+LD D D+ +I L +K +   
Sbjct: 385 FVGLGPDLDGMVHINDIAWDKSGDQAIEAFTKGDRVKAKVLDVDVDKERISLGIKQL--- 441

Query: 694 TGKPI 698
           +G PI
Sbjct: 442 SGDPI 446



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    ++D+ E   + KG V  + D+GAFV   G  DGL+H++
Sbjct: 169 GNIVVSRRAILEESRAEQRAEIVSDMAEG-DVRKGIVKNITDYGAFVDL-GGIDGLLHVT 226

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +S +R+   S VV+ G  V V+++  + +  +I L MK +  +    I
Sbjct: 227 DMSYKRINHPSQVVEVGQEVEVQIIKINPETQRISLGMKQLGTDPWDNI 275



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFC-GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
                V ++   G  V F   A    +  S LS +R  +  +    GD V  K++  D  
Sbjct: 469 TVTCTVTEITSGGIEVEFGTPAVKSFIRRSDLSRDRADQRPERFAVGDKVDAKIITVDRA 528

Query: 680 RGKIKLSMK 688
             ++ LS+K
Sbjct: 529 TRRVSLSIK 537


>gi|284164159|ref|YP_003402438.1| translation initiation factor 2, subunit alpha [Haloterrigena
           turkmenica DSM 5511]
 gi|284013814|gb|ADB59765.1| translation initiation factor 2, alpha subunit [Haloterrigena
           turkmenica DSM 5511]
          Length = 266

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G++ ++ DFG FV     RD  GL+HIS++++  +    D V+EG  V  K+
Sbjct: 7   PDPGELVVGKIDEIEDFGVFVDLEEYRDKRGLIHISEVASGWIKNVRDHVREGQIVVCKV 66

Query: 675 LDFDDR-GKIKLSMKVVD 691
           L+ D+   +I LS+K V+
Sbjct: 67  LEIDEESQQIDLSLKDVN 84


>gi|67922621|ref|ZP_00516127.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
 gi|67855549|gb|EAM50802.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
          Length = 313

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 20/186 (10%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +    +     ++ +       +      L  F PR  +M    + +  ++G     
Sbjct: 120 WENVEEIAEMGHSVQMRVTRTNKGGVVGEVEGLQGFIPRSHLME--KEDLNGLVG----- 172

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
              ++  T  +VN     T K+  S    I AAR       D  EV ++  G+V ++  +
Sbjct: 173 --QLLTATFLEVN---QSTNKLVLSQRRAIAAAR------IDKLEVGQLVSGKVARIQPY 221

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G FV F G   GL+HI+Q+S  RV   + V K    + V +L  D+ + +I LS K+++ 
Sbjct: 222 GIFVDFEG-VSGLLHITQVSGSRVDDLNHVFKYNQEIKVMILSIDEYKNRIALSTKILEN 280

Query: 693 NTGKPI 698
           + G+ I
Sbjct: 281 HPGEII 286



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                E  ++ +G+V++  D GA+V   G   G V I+++  E     ++++   +    
Sbjct: 36  YDYKCEKGQVVRGKVIQHSDDGAYVDIGGKSAGFVPINEVDLESRPDLAEILPIDEEKEF 95

Query: 673 KLL-DFDDRGKIKLSMKVVD 691
            ++ + +  G++KLS + + 
Sbjct: 96  IVISEQNADGQVKLSRRQLQ 115


>gi|269797563|ref|YP_003311463.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
 gi|269094192|gb|ACZ24183.1| RNA binding S1 domain protein [Veillonella parvula DSM 2008]
          Length = 133

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   V   + ++K  D V VK+L  
Sbjct: 4   EVGNIIDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYVEDINTLLKVEDPVKVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D   KI LS++      G  
Sbjct: 64  DG-NKIGLSIRQTQPKEGMD 82


>gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein
           [Blastopirellula marina DSM 3645]
 gi|87286283|gb|EAQ78192.1| ribosomal protein S1-like RNA-binding domain protein
           [Blastopirellula marina DSM 3645]
          Length = 1043

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V+ V+DFGAFV       G+VHIS+L+   V+   +VV  GD + V +++ D DR ++
Sbjct: 879 GTVLNVVDFGAFVDIGLHDSGMVHISRLANRYVSDPHEVVSVGDVITVWVVEIDKDRRRV 938

Query: 684 KLSMKVVDQNTGKPI 698
            L+   ++  T K I
Sbjct: 939 SLT--AIEPGTEKAI 951


>gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group]
          Length = 382

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ 
Sbjct: 222 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 280

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 281 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 310


>gi|289192469|ref|YP_003458410.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           sp. FS406-22]
 gi|288938919|gb|ADC69674.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           sp. FS406-22]
          Length = 263

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V  V  +GAFV       ++G++HIS++++  V    D VK G  V  K+
Sbjct: 6   PEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKV 65

Query: 675 LDFDDR-GKIKLSMKVV 690
           L  D+R G I LS+K V
Sbjct: 66  LRVDERKGHIDLSLKRV 82


>gi|300711776|ref|YP_003737590.1| translation initiation factor IF-2 subunit alpha [Halalkalicoccus
           jeotgali B3]
 gi|299125459|gb|ADJ15798.1| translation initiation factor IF-2 subunit alpha [Halalkalicoccus
           jeotgali B3]
          Length = 266

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGA--RDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   ++  G++ ++ DFG FV       + GL+HIS++++  +    D V+ G TV  K+
Sbjct: 7   PTPGELVVGKIEEIEDFGVFVDLLEYEDKQGLIHISEVASGWIKNVRDHVRVGQTVVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKPIV 699
           L+ D    +I LS K V+++  K  +
Sbjct: 67  LEVDKGSQQIDLSYKDVNEHQRKDTI 92


>gi|254294704|ref|YP_003060727.1| 30S ribosomal protein S1 [Hirschia baltica ATCC 49814]
 gi|254043235|gb|ACT60030.1| ribosomal protein S1 [Hirschia baltica ATCC 49814]
          Length = 564

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +    +     +     G+V  + D+GAFV      +GL+H+S++S  ++      ++  
Sbjct: 271 DPWDGVAAKYPLGAKLSGRVTNITDYGAFVELEDGVEGLIHVSEMSWTKKNLHPGKIISS 330

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              V V +LD D D+ +I L +K    N  +
Sbjct: 331 SQEVEVMVLDVDSDKRRISLGLKQTQNNPWE 361



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 11/131 (8%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           GK+I    E     +++D D           +         +           +G+V  +
Sbjct: 325 GKIISSSQEVEVMVLDVDSDKRRISLGLKQTQNN----PWEAFIAENPTGSDVEGEVRGI 380

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +FG F+      DG+VHI+ +   R       D   +GDTV  ++LD D ++ +I L +
Sbjct: 381 TEFGMFIGLGPELDGMVHINDIDWNRSGEEAIQD-FNKGDTVKARVLDVDVEKERISLGI 439

Query: 688 KVVDQNTGKPI 698
           K +   TG PI
Sbjct: 440 KQL---TGDPI 447



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G + ++  ++ E   A +    + ++ E  +  +G V  + D+GAFV   G  DGL+H++
Sbjct: 170 GNIVVSRRAVLEESRAEQRAEIVGNMGEGEQR-RGVVKNITDYGAFVDL-GGIDGLLHVT 227

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            +S +RV+  S VV+ G  V V+++  + D  +I L MK +  +  
Sbjct: 228 DMSWKRVSHPSQVVEVGQEVEVQIIKINPDTQRISLGMKQLMSDPW 273



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           F          +  S LS +R  +  +    GD +   +  FD    ++ LS+K ++   
Sbjct: 474 FGDEGQEMTAFIRKSDLSRDRAEQRPERFSVGDKIDALITQFDKASRRVGLSVKALEIRE 533

Query: 695 GKPIV 699
            K  V
Sbjct: 534 EKEAV 538


>gi|254456362|ref|ZP_05069791.1| 30S ribosomal protein S1 [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083364|gb|EDZ60790.1| 30S ribosomal protein S1 [Candidatus Pelagibacter sp. HTCC7211]
          Length = 575

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I E+   KV   D   +++  S         E I +     E+NKIYK +V K+MDFGA
Sbjct: 251 NIGEKHDLKVITVDKEKLQVGCSVKQLSPDPFEHIENY----ELNKIYKVKVSKLMDFGA 306

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           F         L+H S+LS  ++      + K GD +   + + D D+ ++ +S ++  +N
Sbjct: 307 FCELEPGLTTLLHSSELSWTKKNISAKKMFKVGDEIDCVITEIDKDKRRVAISHRLTQEN 366

Query: 694 T 694
            
Sbjct: 367 P 367



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVK-VMDFGAFVHFCGARDGL 646
           D        S    I + ++  ++      +V  I KG  VK    FG F +  G  D L
Sbjct: 173 DKIRGNACVSRREIISSFKKEDKAKIIEKYKVGDIIKGAEVKGYSTFGCFFNVNGELDVL 232

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           VH+ ++S  RV    +V   G+   +K++  D    ++  S+K +  + 
Sbjct: 233 VHLQEISYSRVNHPDEVFNIGEKHDLKVITVDKEKLQVGCSVKQLSPDP 281



 Score = 44.1 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 23/161 (14%)

Query: 557 AIPPDQIRNV-----IGMGGKVIRGIVEQTGAKVNID--------DDGTVKIASSSLAEI 603
            +   ++ +      +  G   +    E +  K NI         D+    I      + 
Sbjct: 295 KVKVSKLMDFGAFCELEPGLTTLLHSSELSWTKKNISAKKMFKVGDEIDCVITEIDKDKR 354

Query: 604 EAAR-------EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE 655
             A            +      V  I +G+VV   ++  FV       D  +H + L+  
Sbjct: 355 RVAISHRLTQENPFETFEKKYPVGTIVEGEVVNKNEYSLFVKVEDLDVDAFLHCNDLTYL 414

Query: 656 RVAKTS-DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              +   +  K+GD + VK+L+      KI++ ++    + 
Sbjct: 415 NNGEQELEKYKKGDKIKVKVLEVKVSEQKIRVGLRQTQADP 455


>gi|220918900|ref|YP_002494204.1| RNA binding S1 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956754|gb|ACL67138.1| RNA binding S1 domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 535

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           KV   D     ++  +L E E A +   +   +     ++ G V  V D+GAFV   G  
Sbjct: 289 KVTRADARDAVLSRRALLEEERAHKAAETRARLAPGA-VFDGVVTSVQDYGAFVDI-GGV 346

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR----GKIKLSMK 688
           +GLVH+S+L+ +RV+K  D++  GD V V++L  D+      +I LS+K
Sbjct: 347 EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDPKKGERIGLSVK 395



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +  V KV  FG FV F G R GLV  S+  T R +      K GDT+   +   D
Sbjct: 427 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGSDLRRSFKVGDTLQALVSAID 485

Query: 679 DRGKIKLS 686
           ++G+I+LS
Sbjct: 486 EQGRIRLS 493


>gi|72383525|ref|YP_292880.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL2A]
 gi|72003375|gb|AAZ59177.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
          Length = 369

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +     V+   D + V ++D D +RG+I LS
Sbjct: 262 RGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLS 320

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 321 TKALEPEPG 329


>gi|57641035|ref|YP_183513.1| translation initiation factor IF-2 subunit alpha [Thermococcus
           kodakarensis KOD1]
 gi|68052050|sp|Q5JE49|IF2A_PYRKO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|57159359|dbj|BAD85289.1| translation initiation factor eIF-2, alpha subunit [Thermococcus
           kodakarensis KOD1]
          Length = 275

 Score = 74.9 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V  +  +GAF+       ++G +HIS+++   V    D +KE
Sbjct: 1   MPRKAKEYPEEGEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  +  K++  D ++G I LS+K V+Q   K
Sbjct: 61  GQKIVAKVIRVDPEKGHIDLSLKRVNQQQRK 91


>gi|86605910|ref|YP_474673.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
 gi|86554452|gb|ABC99410.1| putative ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
          Length = 304

 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
           ++ +G+V  +  FG FV       GL+ I Q+S   VA  SD+ + G  +   ++D D+ 
Sbjct: 198 QVVRGKVSALKPFGVFVELEEGGSGLLPIKQVSQSFVASLSDLFQPGQPLKAVVIDVDEA 257

Query: 680 RGKIKLSMKVVDQNTGK 696
           +G++ LS++V+++  G+
Sbjct: 258 KGRVALSLRVLEKYPGE 274


>gi|283768206|ref|ZP_06341119.1| S1 RNA binding domain protein [Bulleidia extructa W1219]
 gi|283105083|gb|EFC06454.1| S1 RNA binding domain protein [Bulleidia extructa W1219]
          Length = 749

 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V     G V  V+DFGAF+      DGL HIS ++ ++    S+++  GD V V + + 
Sbjct: 635 HVGDQLSGTVRNVVDFGAFIDIGLHEDGLAHISHMAMKKFNHPSEILSVGDIVTVWVYEI 694

Query: 678 D-DRGKIKLSM 687
           D +R +++LS+
Sbjct: 695 DINRNRVQLSL 705


>gi|260950407|ref|XP_002619500.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
 gi|238847072|gb|EEQ36536.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
          Length = 1677

 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 616  VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E+ +IY G V KV D+G FV   G A DGL H S+++  +V   + +  EGD V VK+
Sbjct: 1210 ELEIGEIYDGTVKKVADYGVFVKLDGTAVDGLCHRSEIADNQVENAAALFAEGDRVKVKI 1269

Query: 675  LDF-DDRGKIKLSMKV 689
            L    D+ ++ L MK 
Sbjct: 1270 LKIFKDKKQLSLGMKA 1285



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 20/178 (11%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
             + IL+E   ++ +         P   +  I          +GGKV   ++ + G K+ 
Sbjct: 479 EIIKILDEAKGMIVKIFGDFEALVPANHMSDIKLVYPERKFKVGGKVKGRVLYKNGKKLF 538

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG-QVVKVMDF----GAFVHFCG 641
           +               +  +   +     V ++  +  G +   ++D     GA V F G
Sbjct: 539 V--------------TLRKSLVNMEDDAIVSDIENVVVGFKTTAIVDRFVPGGALVTFFG 584

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
                +  S++S   V +  D +K G  V V++L  + +  KI ++++   + + K I
Sbjct: 585 KLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVTLRQSTELSNKQI 642



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 606  AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            AR+   +     +V   Y  +V KV      V       G  +I+    +   K  +   
Sbjct: 1024 ARKQNLTSFTQLKVGDQYPAKVFKVTKSFVLVELAPGLVGYSYITDALDDYDLKLEETYH 1083

Query: 666  EGDTVWVKLLD-FDDRGKIKLSMKVVDQNTGKP 697
                V V + +  ++ GK  +S++  ++ T K 
Sbjct: 1084 INQPVAVTITETLENEGKFSVSLR--NEKTAKD 1114


>gi|160915581|ref|ZP_02077792.1| hypothetical protein EUBDOL_01589 [Eubacterium dolichum DSM 3991]
 gi|158432701|gb|EDP10990.1| hypothetical protein EUBDOL_01589 [Eubacterium dolichum DSM 3991]
          Length = 114

 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V ++ +G +  +  +GAFV+     +GL+HIS++S   V      VK  + V VK+LD D
Sbjct: 2   VGEVVEGVITGIQPYGAFVYLDSKHNGLIHISEISERFVRDVHTYVKINERVKVKILDID 61

Query: 679 DRG-KIKLSMKVVDQNTGKPI 698
           + G   KLS+K V+ N  + +
Sbjct: 62  EDGIHFKLSLKAVEANKARSL 82


>gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
 gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
          Length = 400

 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ 
Sbjct: 243 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 301

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 302 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 331


>gi|20807800|ref|NP_622971.1| ribosomal protein S1 [Thermoanaerobacter tengcongensis MB4]
 gi|20516357|gb|AAM24575.1| Ribosomal protein S1 [Thermoanaerobacter tengcongensis MB4]
          Length = 367

 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 12/220 (5%)

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           +  E     +   +   + G            + E  +  A +  +  +  ++  +   +
Sbjct: 61  NFHEGEELDLYIVMVENEEGSVVASKIKAEEKLGEEKIEKAYKNREIVKGEVVKVVKGGV 120

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
               L    F P   +     + +   +G     +  I    G K+       +K+    
Sbjct: 121 IAYSLGKRLFIPASHLSTKRVENLEEYLGK-ILELLIIEYVPGKKIIASRKEVIKL---- 175

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
                   +M   + +  E   + +G+V +++  GAFV+  G  DG + IS+L   R+  
Sbjct: 176 -----EEEKMKAELLERLEEGDVIEGKVSRIIPKGAFVNLGGM-DGFIPISELGHGRIKS 229

Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
             +V+K G  V   +L  D + GKI LS+K +  N  + +
Sbjct: 230 PEEVIKPGHKVSAYVLKVDKKEGKITLSLKKLLPNPWENV 269



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +      I K ++ ++M FG F       +GLVH + L      K+       D
Sbjct: 265 PWENVKEKYHEGDILKAKITRIMPFGVFAELEPGVEGLVHKNNL-----EKSIKSYSPED 319

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
            + V++L+     +I L  K V    G+ 
Sbjct: 320 IITVEVLEV-SSDRISL--KEVPPFEGED 345


>gi|307720840|ref|YP_003891980.1| 30S ribosomal protein S1P [Sulfurimonas autotrophica DSM 16294]
 gi|306978933|gb|ADN08968.1| SSU ribosomal protein S1P [Sulfurimonas autotrophica DSM 16294]
          Length = 552

 Score = 74.9 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +             +  G V  + DFGAFV      +GL+H   +S ++  K  DV+K G
Sbjct: 359 KPFDEFMKKYNEGDVVTGTVTSLTDFGAFVRI-DGVEGLLHNQDISWDKNTKAKDVLKSG 417

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V VK+   + D  KI L+ K + ++ 
Sbjct: 418 DEVEVKIAKINEDEQKISLNRKTLLESP 445



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V ID      I S      E  ++    I  +   + I +G + K+  +G FV   G  D
Sbjct: 164 VKIDPAENSIILSRRKLFNEERKKKKEIIDQLMAEDVIVEGVIKKITSYGMFVDV-GGVD 222

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
           GLVH +++S +     S + KEGD V VK + +D   + + LS+K V  +    +
Sbjct: 223 GLVHYNEISYKGPVNPSKLYKEGDVVTVKAISYDKDKRHLSLSIKAVQPDPWAEV 277



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
              + ++V+  G +     VE   AK+N D+        + L         I       +
Sbjct: 406 KNTKAKDVLKSGDE-----VEVKIAKINEDEQKISLNRKTLLES------PIDKFATTHK 454

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           VN + KG +  + DFG FV      D L+    L+        + ++ G  +   + + D
Sbjct: 455 VNSVVKGTIRDIKDFGVFVSLEDGVDALIRDEDLAPL----VKEELEPGQEIEAAIANID 510

Query: 679 -DRGKIKLSMKVVD 691
             R +I+LS+K +D
Sbjct: 511 TRRDRIRLSVKKLD 524


>gi|300777665|ref|ZP_07087523.1| YhgF like protein [Chryseobacterium gleum ATCC 35910]
 gi|300503175|gb|EFK34315.1| YhgF like protein [Chryseobacterium gleum ATCC 35910]
          Length = 707

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 14/166 (8%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
                   I+ +M+K L     +L     ++ ++  P + I   IG+ G           
Sbjct: 553 AVHPEAYGIVEKMAKDLGIKTNELIANKEKIALVK-PENYITEEIGILGIK--------- 602

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
              +I  +          A      +         +   I  G V  +  FG FV     
Sbjct: 603 ---DILKELEKPGLDPRKAAKVFEFDPNVKSIKDLKAGMILPGIVNNITAFGCFVDLGIK 659

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
             GLVHISQL    V+  ++VVK    V VK+ + D+ R +++LSM
Sbjct: 660 ESGLVHISQLKDGFVSDVNEVVKLHQHVRVKVTEVDEARKRVQLSM 705


>gi|312864918|ref|ZP_07725148.1| S1 RNA binding domain protein [Streptococcus downei F0415]
 gi|311099538|gb|EFQ57752.1| S1 RNA binding domain protein [Streptococcus downei F0415]
          Length = 116

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++ + YKG +  V  +GAFV       GL+HIS++ T  +    D +K    V V++LD
Sbjct: 1   MKIGEKYKGVITGVKPYGAFVALENGTTGLIHISEIKTGYIENIFDTLKLDQEVLVQVLD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+   K  LSM+ +++ 
Sbjct: 61  YDEFSQKASLSMRTLEEE 78


>gi|302815257|ref|XP_002989310.1| hypothetical protein SELMODRAFT_427936 [Selaginella moellendorffii]
 gi|300142888|gb|EFJ09584.1| hypothetical protein SELMODRAFT_427936 [Selaginella moellendorffii]
          Length = 411

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E++G  + ++ D T K           +  +           K+  G V  +M FGAF+ 
Sbjct: 46  EKSGVAIKVEGDSTSKKRPVLSRAPPRSFGVKDE---ELVPGKVLTGSVKAIMTFGAFID 102

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                DGL+HIS++S   V    DV+  G  V V++   D  + +I+L    +     K
Sbjct: 103 LDARFDGLLHISKISDRFVQNVEDVLTVGQQVQVEIESVDLPKRRIQLKRHALKAQGSK 161



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---SDVVKEGDTVWVKLLDF 677
           ++  G V      G FV   G ++G +H +++ + R  +     ++VK G  + VK+L  
Sbjct: 272 QVVSGVVKNYTRRGCFVQLPGNQEGFLHANEIESSREQEPTPVENLVKVGQELKVKVLRI 331

Query: 678 DDRGKIKLSMKV 689
            D G+I L+MK 
Sbjct: 332 ID-GRINLTMKE 342


>gi|332020128|gb|EGI60572.1| Exosome complex exonuclease RRP46 [Acromyrmex echinatior]
          Length = 220

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R I+ ++ LL R+ GS++F++GDT  I  V  G  E                 M Y+ +
Sbjct: 12  LRPINCEINLLSRSDGSTMFMQGDTTIIAGVN-GPLEA------------KSQKMAYDRV 58

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                     G     +       +      +  +      + I  +  +  G      +
Sbjct: 59  SIEVTYTPLKGPAKVDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAI 118

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             S LAL+++G+ +   VA I+  + K+  D I+  D S  ++      +     +  I 
Sbjct: 119 NASCLALINSGLSMRFTVAAISCMIEKETGDIIMDPDSSQLKNARAEFTYAFDSINKDIV 178

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                   G  S+N  + ++ + +     + +   +V  +
Sbjct: 179 CCHST---GRFSQNEFLTSMDKCRHVSKCVFDYYREVTKK 215



 Score = 44.5 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAV 70
           RP+  E   ++R SDG+ +   G+T ++A V      +S K   D   + V Y       
Sbjct: 13  RPINCEINLLSR-SDGSTMFMQGDTTIIAGVNGPLEAKSQKMAYDRVSIEVTY------- 64

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                  L+  ++  +   LI   I  +        +   T V IN+ +          +
Sbjct: 65  -----TPLKGPAKVDDR--LIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACA 117

Query: 131 MVAASAALMLSGLPFEGPVVG--AQVDYINGQYVLNPRLDEDQG 172
           + A+  AL+ SGL     V      ++   G  +++P   + + 
Sbjct: 118 INASCLALINSGLSMRFTVAAISCMIEKETGDIIMDPDSSQLKN 161


>gi|224099083|ref|XP_002311368.1| predicted protein [Populus trichocarpa]
 gi|118485696|gb|ABK94698.1| unknown [Populus trichocarpa]
 gi|222851188|gb|EEE88735.1| predicted protein [Populus trichocarpa]
          Length = 421

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ 
Sbjct: 249 RKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQP 307

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 308 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 337


>gi|260941418|ref|XP_002614875.1| hypothetical protein CLUG_04890 [Clavispora lusitaniae ATCC 42720]
 gi|238851298|gb|EEQ40762.1| hypothetical protein CLUG_04890 [Clavispora lusitaniae ATCC 42720]
          Length = 1131

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDF-- 677
           + +G V  +  +GAFV       GL HIS++S    RV    DVVK+   V+V++ D   
Sbjct: 207 VCRGTVSNITSYGAFVRLNRFESGLCHISKMSYDGRRVGSPGDVVKQNQEVFVRITDVGS 266

Query: 678 DDRGKIKLSMKVVDQNTGK 696
             R KI LSM  VDQ  G+
Sbjct: 267 GRRRKIALSMVGVDQTNGE 285


>gi|78777071|ref|YP_393386.1| 30S ribosomal protein S1 [Sulfurimonas denitrificans DSM 1251]
 gi|78497611|gb|ABB44151.1| SSU ribosomal protein S1P [Sulfurimonas denitrificans DSM 1251]
          Length = 551

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +             +  G V  + DFGAFV      +GL+H   +S ++  +  DV+K G
Sbjct: 358 KPFDEFMKKHNEGDVITGTVTSLTDFGAFVRI-DGIEGLLHNQDISWDKNVRCKDVLKTG 416

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D V VK+   + +  KI L+ K + ++ 
Sbjct: 417 DEVEVKIAKINPEDQKISLNRKALLESP 444



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K++ + +  V        +    ++    I  + E +   +G + K+  +G FV   G 
Sbjct: 163 VKIDAEQNSIVVSRRKLFNDERKKKK--EIIDKLMEDDTTIEGTIKKITSYGMFVDV-GG 219

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            DGLVH +++S +     S + KEGD V VK + +D   + + LS+K V  +    +
Sbjct: 220 VDGLVHYNEISYKGPVNPSKLYKEGDAVTVKAISYDKDKRHLSLSIKAVQSDPWAEV 276



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE   AK+N +D        + L         I S +   +VN +  G +  + DFG FV
Sbjct: 419 VEVKIAKINPEDQKISLNRKALLES------PIDSFSKSHKVNSVVSGTIRDIKDFGVFV 472

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
                 D L+    LS  + +     ++ G  +   +   D  R +I+LS+K +D
Sbjct: 473 SLEDGVDALIRDEDLSPLQKSD----LEVGQQIEAAIAVIDTRRDRIRLSVKKLD 523


>gi|221119375|ref|XP_002161086.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 221

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 81/216 (37%), Gaps = 17/216 (7%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R++   +  L++  GS     G T+ I  V  G  E +    +   T +   +      
Sbjct: 1   MREMECNLAYLEKPDGSVTLSHGQTKVISAV-YGPVEVKM---NKEITDKATIICILK-- 54

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                   ++G  + +E    ++  +     +  +      +++V +I    GS     +
Sbjct: 55  -------PKIGMSAVKEKVMEKIVAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLLSCLI 107

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             + L+L+ AG+P+   +  +    V + D++++   I+  +D    + F     +  I 
Sbjct: 108 NAACLSLVHAGLPMRNMIVSVCCA-VTNNDEYLVDPTIAEIQDCKCVLTFAFESKNLDIV 166

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           ++      G  +       LQ AK     ILN   +
Sbjct: 167 SI---FTSGLFTVEQYFQCLQLAKASAPDILNFQRQ 199



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 29/224 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSL---KDGQDFFPLTVNYQER--TYAVGKIPGGYLRRES 82
           DG+V  ++G+T V++ V     +   K+  D   +    + +    AV +          
Sbjct: 15  DGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMSAVKEKVM------- 67

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSG 142
                E ++++  +++I        ++  QV++ ++ HD  S    + + AA  +L+ +G
Sbjct: 68  -----EKIVAKTCEQAIIASLH--PRSAIQVVLQIV-HDSGSLLSCL-INAACLSLVHAG 118

Query: 143 LPFEGPVVGAQVDYI-NGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLSED 198
           LP    +V        N +Y+++P + E Q     L          ++ +        E 
Sbjct: 119 LPMRNMIVSVCCAVTNNDEYLVDPTIAEIQDCKCVLTFAFESKNLDIVSIFTSGLFTVEQ 178

Query: 199 VVLDAIIFGHNECKPVIEAISK-LAKMCAKEP--IVIDSKDFSK 239
                +         ++    + + K  +K+   I +D +D  +
Sbjct: 179 YF-QCLQLAKASAPDILNFQRQSVVKFLSKQTNDIEVDYQDIDE 221


>gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays]
 gi|194703708|gb|ACF85938.1| unknown [Zea mays]
 gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays]
 gi|223948553|gb|ACN28360.1| unknown [Zea mays]
          Length = 401

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ 
Sbjct: 243 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 301

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 302 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 331


>gi|319939357|ref|ZP_08013717.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
           1_2_62CV]
 gi|319811343|gb|EFW07638.1| S1 RNA binding domain-containing protein [Streptococcus anginosus
           1_2_62CV]
          Length = 712

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                ++ +  +G V  V+DFGAFV      DGL+HIS+LS   V   S VV  GD V V
Sbjct: 630 DMKDLQIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSNSYVKHPSQVVSVGDLVTV 689

Query: 673 KLLDFD-DRGKIKLSM 687
            +   D +R K+ LS+
Sbjct: 690 WVDKLDIEREKVNLSL 705


>gi|288554856|ref|YP_003426791.1| Tex transcription access, protein (S1 RNA binding) [Bacillus
           pseudofirmus OF4]
 gi|288546016|gb|ADC49899.1| Tex transcription access, protein (S1 RNA binding) [Bacillus
           pseudofirmus OF4]
          Length = 726

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
              QI   +G+G   ++ I+        +  D+        +   ++     +  +T   
Sbjct: 599 NEHQIAEELGLGMPTVKDIIATLIRPTRDPRDE-------VAKPLLKQGVLRLEDLTRGM 651

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+     G V  V+DFGAFV     +DGLVHIS+L+   V    +VV  G+ V V + D 
Sbjct: 652 ELQ----GTVRNVVDFGAFVDVGVKQDGLVHISKLTKRFVKHPLEVVAVGEIVTVWVEDV 707

Query: 678 D-DRGKIKLSM 687
           D  +G++ L+M
Sbjct: 708 DIKKGRVALTM 718


>gi|327190723|gb|EGE57804.1| putative transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CNPAF512]
          Length = 769

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYK 624
           I++    +  ID+   +      +AE+E      R            +     +   + +
Sbjct: 595 ILKSIDPRQFIDETFGLPTVRDIIAELEKPGRDPRPSFKTATFAEGVNEISDLKPGMVLE 654

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R +I
Sbjct: 655 GTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRI 714

Query: 684 KLSMKVVDQNTGKP 697
            LSMK  D +   P
Sbjct: 715 ALSMKRDDGSAAPP 728


>gi|315586944|gb|ADU41325.1| 30S ribosomal protein S1 [Helicobacter pylori 35A]
          Length = 552

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           V  + ++GAFV      +G +H+S++S ++ V+  S  +  G  + VK++D D +  +++
Sbjct: 292 VSNIENYGAFVDIGNDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLR 351

Query: 685 LSMKVV 690
           +S+K +
Sbjct: 352 VSLKQL 357



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHL 442



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVEV-KGVEGLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDAEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCMVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|315453859|ref|YP_004074129.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179]
 gi|315132911|emb|CBY83539.1| 30S ribosomal protein S1 [Helicobacter felis ATCC 49179]
          Length = 556

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++       + E   ++ G V  V  FG FV      +GLVH S+++       +   +E
Sbjct: 191 KQQHEGAQKLMESQAVHTGVVKSVTGFGIFVEV-NGVEGLVHYSEITHRGSTNPAKHFRE 249

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V VK + +D ++ ++ LS+K   ++  + I
Sbjct: 250 GDEVQVKAIAYDPEKKRLSLSIKATMEDPWEEI 282



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K   S   +           T +     I K  V  + ++G FV      +G +HIS++S
Sbjct: 264 KKRLSLSIKATMEDPWEEIQTKLKVGYAI-KVVVSSIENYGVFVDIGNDIEGFLHISEIS 322

Query: 654 TER-VAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
             + V    D +     + VK+++ D +  ++++S+K +    
Sbjct: 323 WNKDVKHPGDYLSVDQEIDVKIIEIDSKNRRLRVSLKQLSDKP 365



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 22/181 (12%)

Query: 535 MSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQTGAK----- 584
           +   + +   ++         + +    I N      IG   +    I E +  K     
Sbjct: 271 IKATMEDPWEEIQTKLKVGYAIKVVVSSIENYGVFVDIGNDIEGFLHISEISWNKDVKHP 330

Query: 585 ---VNIDDDGTVKIASSSLAEI-------EAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
              +++D +  VKI               + + +          V  + +G+VV + DFG
Sbjct: 331 GDYLSVDQEIDVKIIEIDSKNRRLRVSLKQLSDKPFNEFVSKHRVGDLVEGKVVSLTDFG 390

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV+  G  DGL+H      E   K  D  K GDTV  K+   + +  KI L  K    +
Sbjct: 391 AFVNL-GGVDGLLHNKDAFWEADKKCVDHFKVGDTVQAKIARINKEDEKISLETKSKQPS 449

Query: 694 T 694
            
Sbjct: 450 P 450


>gi|237742908|ref|ZP_04573389.1| LytB protein [Fusobacterium sp. 4_1_13]
 gi|229430556|gb|EEO40768.1| LytB protein [Fusobacterium sp. 4_1_13]
          Length = 827

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + GK I+ IV+    KV+  D    KI  S      A +E   +      V +I    V 
Sbjct: 431 VNGKKIQVIVK--DIKVDPKDKKNRKITYSVKDIRLAEQEKEFAG---LTVGQIVDCVVT 485

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+  + +KLS+
Sbjct: 486 EVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKLSI 544

Query: 688 KVVDQNTG 695
           K ++++  
Sbjct: 545 KKLEEDPW 552



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFDD 679
              +G V KV+ +GAFV      +GLVHIS  S  +     ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHP 622

Query: 680 RGK-IKLSMKVVDQNTGK 696
             + +KL +K +  N  +
Sbjct: 623 ENRKLKLGIKQLVANPWE 640



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDKKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D   EGD V  ++++ + D  KIKLS
Sbjct: 749 FIELTKGIDGFIPTQFASKEFIKNIRDKFNEGDIVKAQVVEVNKDTQKIKLS 800



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      V  + KG+VV+V  FG FV      D  VH S  S           + G+
Sbjct: 638 PWETAEKDFAVGTVIKGKVVEVKPFGIFVEITDGIDAFVHSSDYSWIGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDKKIKGSLKALRKSPWE 724


>gi|294784220|ref|ZP_06749515.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 3_1_27]
 gi|294488086|gb|EFG35437.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 3_1_27]
          Length = 827

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + GK I+ IV+    KV+  D    KI  S      A +E   +      V +I    V 
Sbjct: 431 VNGKKIQVIVK--DIKVDPKDKKNRKITYSVKDIRLAEQEKEFAG---LTVGQIVDCVVT 485

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+  + +KLS+
Sbjct: 486 EVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKLSI 544

Query: 688 KVVDQNTG 695
           K ++++  
Sbjct: 545 KKLEEDPW 552



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFDD 679
              +G V KV+ +GAFV      +GLVHIS  S  +     ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHP 622

Query: 680 RGK-IKLSMKVVDQNTGK 696
             + +KL +K +  N  +
Sbjct: 623 ENRKLKLGIKQLVANPWE 640



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDKKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D   EGD V  ++++ + D  KIKLS
Sbjct: 749 FIELTKGIDGFIPTQFASKEFIKNIRDKFNEGDIVKAQVVEVNKDTQKIKLS 800



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      V  + KG+VV+V  FG FV      D  VH S  S           + G+
Sbjct: 638 PWETAEKDFAVGTVIKGKVVEVKPFGIFVEITDGIDAFVHSSDYSWIGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDKKIKGSLKALRKSPWE 724


>gi|34762725|ref|ZP_00143715.1| LytB protein; SSU ribosomal protein S1P [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887624|gb|EAA24703.1| LytB protein; SSU ribosomal protein S1P [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 827

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + GK I+ IV+    KV+  D    KI  S      A +E   +      V +I    V 
Sbjct: 431 VNGKKIQVIVK--DIKVDPKDKKNRKITYSVKDIRLAEQEKEFAG---LTVGQIVDCVVT 485

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+  + +KLS+
Sbjct: 486 EVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKLSI 544

Query: 688 KVVDQNTG 695
           K ++++  
Sbjct: 545 KKLEEDPW 552



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFDD 679
              +G V KV+ +GAFV      +GLVHIS  S  +     ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGERVKVRITDLHP 622

Query: 680 RGK-IKLSMKVVDQNTGK 696
             + +KL +K +  N  +
Sbjct: 623 ENRKLKLGIKQLVANPWE 640



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDKKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D   EGD V  ++++ + D  KIKLS
Sbjct: 749 FIELTKGIDGFIPTQFASKEFIKNIRDKFNEGDIVKAQVVEVNKDTQKIKLS 800



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      V  + KG+VV+V  FG FV      D  VH S  S           + G+
Sbjct: 638 PWETAEKDFAVGTVIKGKVVEVKPFGIFVEITDGIDAFVHSSDYSWIGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDKKIKGSLKALRKSPWE 724


>gi|332711689|ref|ZP_08431620.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
 gi|332349667|gb|EGJ29276.1| SSU ribosomal protein S1P [Lyngbya majuscula 3L]
          Length = 285

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    K+  S    + AA           EV ++ +G+V  +  FG FV F    +GL+H
Sbjct: 158 DRDRKKLVLSQREAVRAA------TFSELEVGQLVEGKVAAIKPFGVFVDF-NQTNGLLH 210

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           I Q+S   V   S V + G  + V +++ D+ +G+I +S +V++   G+
Sbjct: 211 IKQVSQSFVEDLSKVFEIGQVIQVMIINLDEGKGRISMSTRVLENYPGE 259



 Score = 38.7 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +       +  ++ +G+V      GA+V   G     + IS++S E     S+V+   
Sbjct: 6   QALEEYDYEFKQGQVVRGRVHNYESDGAYVDIGGKSLAYLPISEVSLESDLDWSEVLPLN 65

Query: 668 DTVWVKLL-DFDDRGKIKLSMKVVD 691
           + +   ++ + +  G++ LS + ++
Sbjct: 66  EEMDFLIIREQNADGQVTLSRRQLE 90


>gi|325294239|ref|YP_004280753.1| RNA binding S1 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064687|gb|ADY72694.1| RNA binding S1 domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 338

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 15/220 (6%)

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
           G+E  +  ++ +   T+ G   + ++          +   L++    R  I   +     
Sbjct: 57  GEEIDVCVVEPE---TEEGYALLSVNCARSIKEWEKIASDLEKKGVIRGRIKQRVRGGYK 113

Query: 541 ESRLQ-LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
            +  Q +  F P  ++  +P  +  + +    +     V++    + I        +   
Sbjct: 114 VAISQGITVFLPMSQVDIMPVTKPDDWLDREIEAKVLSVDRKRRSIVI--------SRRK 165

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK 659
           L E + A+    ++  + E   + +G V  V+DFG FV      DGLVH S +S   +  
Sbjct: 166 LLEEKRAKMRKETLEKLKEG-DVVEGIVKNVVDFGIFVDV-QGVDGLVHKSDISWSGLKT 223

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
             D  + GD + VK+   D ++ ++ LS+K + ++    +
Sbjct: 224 PFDTAEIGDRIKVKIKKIDREKERLVLSIKDISEDPWLEV 263


>gi|22299589|ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
 gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
          Length = 330

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S + +     V    D V V ++D D +RG+I LS
Sbjct: 204 RGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFNVNDQVKVMIIDLDAERGRISLS 262

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 263 TKQLEPEPG 271



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
            I  G V  +   GA +         + I ++S  R+    +V++  +T    +L D ++
Sbjct: 32  DIVAGTVFSIEPKGALIDIGAKTAAYIPIQEMSINRIESPEEVLQPNETREFFILADENE 91

Query: 680 RGKIKLSMKVVD 691
            G++ LS++ ++
Sbjct: 92  EGQLTLSIRRIE 103


>gi|190890602|ref|YP_001977144.1| transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CIAT 652]
 gi|190695881|gb|ACE89966.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CIAT 652]
          Length = 769

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           AI P Q  +    G   +R I+ +             +    S      A  +       
Sbjct: 598 AIDPRQFIDET-FGLPTVRDIIAELEKP--------GRDPRPSFKTATFAEGVNEISDLK 648

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P +  + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++
Sbjct: 649 PGM--VLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVE 706

Query: 677 FD-DRGKIKLSMKVVDQNTGKP 697
            D  R +I LSMK  D +   P
Sbjct: 707 VDAKRKRIALSMKRDDGSAAPP 728


>gi|256846880|ref|ZP_05552334.1| ribosomal protein S1 [Fusobacterium sp. 3_1_36A2]
 gi|256717678|gb|EEU31237.1| ribosomal protein S1 [Fusobacterium sp. 3_1_36A2]
          Length = 827

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + GK I+ IV+    KV+  D    KI  S      A +E   +      V +I    V 
Sbjct: 431 VNGKKIQVIVK--DIKVDPKDKKNRKITYSVKDIRLAEQEKEFAG---LTVGQIVDCVVT 485

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+  + +KLS+
Sbjct: 486 EVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVIVSLDEAKRNVKLSI 544

Query: 688 KVVDQNTG 695
           K ++++  
Sbjct: 545 KKLEEDPW 552



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   IV    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVIVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFDD 679
              +G V KV+ +GAFV      +GLVHIS  S  +     ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHP 622

Query: 680 RGK-IKLSMKVVDQNTGK 696
             + +KL +K +  N  +
Sbjct: 623 ENRKLKLGIKQLVANPWE 640



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDKKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D   EGD V  ++++ + D  KIKLS
Sbjct: 749 FIELTKGIDGFIPTQFASKEFIKNIRDKFNEGDIVKAQVVEVNKDTQKIKLS 800



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      V  + KG+VV+V  FG FV      D  VH S  S           + G+
Sbjct: 638 PWETAEKDFAVGTVIKGKVVEVKPFGIFVEITDGIDAFVHSSDYSWIGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDKKIKGSLKALRKSPWE 724


>gi|315221406|ref|ZP_07863327.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
 gi|315189525|gb|EFU23219.1| S1 RNA binding domain protein [Streptococcus anginosus F0211]
          Length = 709

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  +G V  V+DFGAFV      DGL+HIS+LS   V   S VV  GD V V +   
Sbjct: 632 QIGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSNSYVKHPSQVVSVGDLVTVWVDKL 691

Query: 678 D-DRGKIKLSM 687
           D +R K+ LS+
Sbjct: 692 DIEREKVNLSL 702


>gi|315030850|gb|EFT42782.1| putative general stress protein 13 [Enterococcus faecalis TX4000]
          Length = 128

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M R      ++  +  G +  +  +GAFV       GL+HIS++          ++  G 
Sbjct: 1   MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHISEVQAGFTKNIHGLLTVGQ 60

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVD 691
            V V+++D D+   KI LS++ ++
Sbjct: 61  KVTVQVIDVDEYSQKISLSLRTLE 84


>gi|323449334|gb|EGB05223.1| hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens]
          Length = 381

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 120/358 (33%), Gaps = 50/358 (13%)

Query: 341 FIRGDTQ--AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
               +T+   +  VTL ++ +E    +     ++ +M  YN +  +  ++S         
Sbjct: 6   VENWETKYRVLTPVTLDSKNEE---YTRFDKYKSKYMGRYNSVDQSKTDMSYA------- 55

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
              G L       V  Q   F     +   + + DG        G+  A +   +P+ + 
Sbjct: 56  -EFGAL-------VTAQEYSFKNGDILTGTVVQYDGPQKAMVEVGAKTAAV---LPLRE- 103

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
                +  + DG+      D+    +     D      D G   + +   +   +   + 
Sbjct: 104 ---ATIAPLGDGETIATFVDVGEQYEFQIVSD----SRDDGQVTVSIKKIMYAKAWETLS 156

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +       I+             L  F P   IM           G GG     I 
Sbjct: 157 EWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIM-----------GSGGASEAMIG 205

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K    +    K+  S+       R +I       +   +Y G V  V  +GAFV 
Sbjct: 206 KKIPLKFLEVNQEANKLVVSNR------RAVIEHSMASIKRGDVYDGTVTAVKPYGAFVE 259

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
             G   GL+HISQ+S +RV      +  G  +   ++D D   G+I LS K ++   G
Sbjct: 260 IMGM-SGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEPG 316


>gi|197124120|ref|YP_002136071.1| RNA binding S1 domain protein [Anaeromyxobacter sp. K]
 gi|196173969|gb|ACG74942.1| RNA binding S1 domain protein [Anaeromyxobacter sp. K]
          Length = 537

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           KV   D     ++  +L E E A +   +   +     ++ G V  V D+GAFV   G  
Sbjct: 291 KVTRADARDAVLSRRALLEEERAHKAAETRARLAPGA-VFDGVVTSVQDYGAFVDI-GGV 348

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR----GKIKLSMK 688
           +GLVH+S+L+ +RV+K  D++  GD V V++L  D+      +I LS+K
Sbjct: 349 EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDPKKGERIGLSVK 397



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +  V KV  FG FV F G R GLV  S+  T R A      K GDT+   +   D
Sbjct: 429 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGADLRRSFKVGDTLQALVSAID 487

Query: 679 DRGKIKLS 686
           ++G+I+LS
Sbjct: 488 EQGRIRLS 495


>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
 gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
          Length = 260

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 94/264 (35%), Gaps = 32/264 (12%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            V EDI+   V  ++ +K  R DGR     RDI  +  L+++  GS+    GDT  +V V
Sbjct: 4   EVIEDIRKDYVYDLI-EKGKRADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGV 62

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA---- 408
            +   E   + D+     +   M +   +P A+ E    G P    I   R+  R     
Sbjct: 63  KVEPGEP--FPDT---PNKGILMTNAELVPLASPEFES-GPPGENSIELARVVDRGIRGS 116

Query: 409 ----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---------- 454
               +  +  +  +  + + I     ++DG+   A   G+ ++L++  +P          
Sbjct: 117 ETIDLEKLCIEEGEKVWMIFIDIHTLDNDGNLVDAAALGAIMSLLNVAIPYEQYGLTGED 176

Query: 455 ---ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
              I      + +  +       +L D +  E+        V     G  +        G
Sbjct: 177 TLQIRDTPVAVTVVEI----RGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSGSNG 232

Query: 512 ISENIMVMALQQAKRGRLHILNEM 535
           ++E  +V   +        I  + 
Sbjct: 233 LTEEKIVKMTEIGIEKAREIREKY 256



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 35/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQ-DFFPLTVNYQERTYAVG 71
           R + +E   I ++++G+     G+TVVL  V V          +   L  N +    A  
Sbjct: 33  RDIIVERDLI-KKAEGSTRVQIGDTVVLVGVKVEPGEPFPDTPNKGILMTNAELVPLASP 91

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ----VIINVMQHDLE 123
           +   G       P EN I ++R++DR IR        K    E +    + I++   D +
Sbjct: 92  EFESGP------PGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTLDND 145

Query: 124 SSPHVVSMVAASAALMLSGLPF--------------EGPVVGAQVDYINGQYVLNPR-LD 168
            +    + + A  +L+   +P+              + PV    V  I G  +++P   +
Sbjct: 146 GNLVDAAALGAIMSLLNVAIPYEQYGLTGEDTLQIRDTPV-AVTVVEIRGNLLVDPNVYE 204

Query: 169 EDQGSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
           E   +  L V    D  +  + +  +N L+E+ ++     G  + + +
Sbjct: 205 ESAATSKLTVISNADGSISGLQKSGSNGLTEEKIVKMTEIGIEKAREI 252


>gi|68467887|ref|XP_722102.1| hypothetical protein CaO19.11516 [Candida albicans SC5314]
 gi|68468204|ref|XP_721941.1| hypothetical protein CaO19.4033 [Candida albicans SC5314]
 gi|46443884|gb|EAL03163.1| hypothetical protein CaO19.4033 [Candida albicans SC5314]
 gi|46444050|gb|EAL03328.1| hypothetical protein CaO19.11516 [Candida albicans SC5314]
          Length = 996

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 7/87 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKL 674
           P+V KIY G V  V ++GAF+   G   GL HISQ+S +  RV   ++V+     V+VK+
Sbjct: 73  PQVGKIYSGVVQSVTNYGAFIKIEG-TSGLCHISQMSFDGSRVES-TNVLAPNQKVFVKV 130

Query: 675 LDFDDR-GKIKLSMKVVDQNTG--KPI 698
           +D      +I LSM+ ++QNTG  +PI
Sbjct: 131 IDIQTHANRISLSMRGINQNTGHEEPI 157


>gi|329116408|ref|ZP_08245125.1| S1 RNA binding domain protein [Streptococcus parauberis NCFD 2020]
 gi|326906813|gb|EGE53727.1| S1 RNA binding domain protein [Streptococcus parauberis NCFD 2020]
          Length = 117

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GLVHIS++ +  +   +D++ +G  V V+++D
Sbjct: 1   MKIGDKLHGKITGIKPYGAFVALEDGTTGLVHISEIKSGYIDNINDILCKGQEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+   K  LS++ +++ 
Sbjct: 61  VDEFTNKASLSLRTLEEE 78


>gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group]
 gi|113548409|dbj|BAF11852.1| Os03g0315800 [Oryza sativa Japonica Group]
          Length = 390

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RVA  S V++ 
Sbjct: 230 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 288

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 289 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 318


>gi|34763707|ref|ZP_00144630.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain)
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27886535|gb|EAA23776.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain)
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 359

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 15/160 (9%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDD 589
           IL ++   L +   +L     +++       +       G + ++ + E     + +  D
Sbjct: 212 ILGKIGFNLEKYNDELDIAREKLKSF--DYKKFAEENSFGLETVKDVYEALLKDRRDPRD 269

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D    +  S +  I+             +V    +G V  V+ FGAF+      D L+H+
Sbjct: 270 DFEKPLLKSDILNIDN-----------LQVGMELEGTVRNVVKFGAFIDIGLKNDALLHV 318

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           S++S + +   S V+  G  + + + D D DRG++ L+ K
Sbjct: 319 SEISDKYIDDPSKVLSVGQIIKITIKDVDKDRGRVGLTRK 358


>gi|160903236|ref|YP_001568817.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360880|gb|ABX32494.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
          Length = 123

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            KG+VV +  FGAF+      +G VHIS++S + V + S  +K GD V  K++     GK
Sbjct: 12  VKGKVVDIKKFGAFLELENGEEGFVHISKISKKYVREISSFLKIGDEVQGKVIGRTKDGK 71

Query: 683 IKLSMKVVD---QNTGK 696
            ++S+K  D   ++TGK
Sbjct: 72  YEISLKDFDEEKEDTGK 88


>gi|55380037|ref|YP_137887.1| translation initiation factor IF-2 subunit alpha [Haloarcula
           marismortui ATCC 43049]
 gi|68052076|sp|Q5UX22|IF2A_HALMA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|55232762|gb|AAV48181.1| probable translation initiation factor 2 alpha subunit [Haloarcula
           marismortui ATCC 43049]
          Length = 266

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++  G++ ++ DFG FV       + GL HIS++++  +    D V EG TV  K+
Sbjct: 7   PEPGELVVGKIDEIEDFGVFVDLDEYEGKRGLCHISEVASGWIKNVRDHVNEGQTVVAKV 66

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKP 697
           LD D+   +I LS+K V+ +  K 
Sbjct: 67  LDVDESAQQIDLSIKDVNDHQRKE 90


>gi|325690815|gb|EGD32816.1| S1 RNA binding domain protein [Streptococcus sanguinis SK115]
          Length = 710

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 13/129 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+        ++ D   V +    + +I+  R           + +  +G
Sbjct: 592 LGLGEETLKDIIADLLKPGRDLRDSFDVPVLRQDVLDIKDLR-----------IGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D DR K+ 
Sbjct: 641 VVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDVDREKVN 700

Query: 685 LSMKVVDQN 693
           LS+   +++
Sbjct: 701 LSLIAPNES 709


>gi|237716143|ref|ZP_04546624.1| RNA-binding protein [Bacteroides sp. D1]
 gi|262407755|ref|ZP_06084303.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647232|ref|ZP_06724830.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809620|ref|ZP_06768312.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443790|gb|EEO49581.1| RNA-binding protein [Bacteroides sp. D1]
 gi|262354563|gb|EEZ03655.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637412|gb|EFF55832.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443163|gb|EFG11938.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 710

 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL    ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLVERFISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           +VV     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EVVSIHQHVMVRVMNVDYDRKRIQLSMIGVPQD 710


>gi|170077576|ref|YP_001734214.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
 gi|169885245|gb|ACA98958.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
          Length = 326

 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S + +     V +  D + V ++D D +RG+I LS
Sbjct: 205 RGIKPYGAFIDI-GGVSGLLHISEISHDHIDTPHSVFQVNDELKVMIIDLDAERGRISLS 263

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 264 TKQLEPEPG 272


>gi|86160091|ref|YP_466876.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776602|gb|ABC83439.1| ribosomal protein S1 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 408

 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           KV   D     ++  +L E E A++   +   +     ++ G V  V D+GAFV   G  
Sbjct: 162 KVTRADGRDAVLSRRALLEEERAQKAAETRARLAPGA-VFDGVVTSVQDYGAFVDI-GGV 219

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR----GKIKLSMK 688
           +GLVH+S+L+ +RV+K  D++  GD V V++L  D+      +I LS+K
Sbjct: 220 EGLVHVSELAWDRVSKPQDLLSAGDAVQVQVLRIDEDPKKGERIGLSVK 268



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +  V KV  FG FV F G R GLV  S+  T R A      K GDT+   +   D
Sbjct: 300 VGDVVQATVDKVESFGVFVRFAGGR-GLVPASETGTPRGADLRRSFKVGDTIQALVSAID 358

Query: 679 DRGKIKLS 686
           ++G+I+LS
Sbjct: 359 EQGRIRLS 366


>gi|241203331|ref|YP_002974427.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857221|gb|ACS54888.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 769

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVK 629
             +  ID+   +      +AE+E      R            +     +   + +G V  
Sbjct: 600 DPRQFIDEKFGLPTVRDIIAELEKPGRDPRPSFKTATFAEGVNEISDLKPGMVLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R +I LSMK
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMK 719

Query: 689 VVDQNTGKP 697
             D ++  P
Sbjct: 720 RDDGSSAPP 728


>gi|323449583|gb|EGB05470.1| hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens]
          Length = 381

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 120/358 (33%), Gaps = 50/358 (13%)

Query: 341 FIRGDTQ--AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398
               +T+   +  VTL ++ +E    +     ++ +M  YN +  +  ++S         
Sbjct: 6   VENWETKYRVLTPVTLDSKNEE---YTRFDKYKSKYMGRYNSVDQSKTDMSYA------- 55

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
              G L       V  Q   F     +   + + DG        G+  A +   +P+ + 
Sbjct: 56  -EFGAL-------VTAQEYSFKNGDILTGTVVQYDGPQKAMVEVGAKTAAV---LPLRE- 103

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
                +  + DG+      D+    +     D      D G   + +   +   +   + 
Sbjct: 104 ---ATIAPLGDGETIATFVDVGEQYEFQIVSD----SRDDGQVTVSIKKIMYAKAWETLS 156

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
               +       I+             L  F P   IM           G GG     I 
Sbjct: 157 EWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIM-----------GSGGASEAMIG 205

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   K    +    K+  S+       R +I       +   +Y G V  V  +GAFV 
Sbjct: 206 KKIPLKFLEVNQEANKLVVSNR------RAVIEHSMASIKRGDVYDGTVTAVKPYGAFVE 259

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
             G   GL+HISQ+S +RV      +  G  +   ++D D   G+I LS K ++   G
Sbjct: 260 IMGM-SGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEPG 316


>gi|324993865|gb|EGC25784.1| S1 RNA binding domain protein [Streptococcus sanguinis SK405]
          Length = 710

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 13/129 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+E       ++ D     +    + +I+  R           + +  +G
Sbjct: 592 LGLGEETLKDIIEDLLKPGRDLRDSFDAPVLRQDVLDIKDLR-----------IGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D +R K+ 
Sbjct: 641 VVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDVEREKVN 700

Query: 685 LSMKVVDQN 693
           LS+   +++
Sbjct: 701 LSLIAPNES 709


>gi|323351224|ref|ZP_08086880.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
 gi|322122448|gb|EFX94159.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
          Length = 710

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 13/129 (10%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++ I+E       ++ D     +    + +I+  R           + +  +G
Sbjct: 592 LGLGEETLKDIIEDLLKPGRDLRDSFDAPVLRQDVLDIKDLR-----------IGQKLEG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D +R K+ 
Sbjct: 641 VVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLDVEREKVN 700

Query: 685 LSMKVVDQN 693
           LS+   +++
Sbjct: 701 LSLIAPNES 709


>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
           Brener]
 gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
          Length = 195

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 13/183 (7%)

Query: 304 RTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYV 363
           +  +    +R+DGR  +  R ++ + G +    G    + G       V  G RE    +
Sbjct: 5   KEYISPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASV-YGPREVTNRL 63

Query: 364 DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREI---GHGRLARRAIHPVLPQTAQFP 420
           +S                  A     +  AP RR                 V+  +    
Sbjct: 64  ESKYNE--CIITCEVAIAAFAGE---KRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPN 118

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
             + I  E+   DGS   A +  + LAL+DA V +   V    +GL+    + + + D++
Sbjct: 119 SQIHICVEVLRQDGSDKAACINAACLALVDASVAMRDIVYAQTVGLI----NAVDVVDLT 174

Query: 481 GDE 483
            +E
Sbjct: 175 TEE 177



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 14/165 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT----YA 69
           R + LE G++    DG      G   V A+V   R + +      L   Y E       A
Sbjct: 24  RRMTLEFGKVLG-CDGCCTVMSGLATVCASVYGPREVTNR-----LESKYNECIITCEVA 77

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPH 127
           +    G   R   R ++    +S  +    R   L S+   ++  + + V++ D      
Sbjct: 78  IAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDGSDKA- 136

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQG 172
              + AA  AL+ + +     V    V  IN   V++   +E + 
Sbjct: 137 -ACINAACLALVDASVAMRDIVYAQTVGLINAVDVVDLTTEEMRS 180


>gi|282850011|ref|ZP_06259393.1| putative general stress protein 13 [Veillonella parvula ATCC 17745]
 gi|294793392|ref|ZP_06758537.1| S1 RNA-binding domain protein [Veillonella sp. 6_1_27]
 gi|294795211|ref|ZP_06760345.1| S1 RNA-binding domain protein [Veillonella sp. 3_1_44]
 gi|282580200|gb|EFB85601.1| putative general stress protein 13 [Veillonella parvula ATCC 17745]
 gi|294454003|gb|EFG22378.1| S1 RNA-binding domain protein [Veillonella sp. 3_1_44]
 gi|294455823|gb|EFG24188.1| S1 RNA-binding domain protein [Veillonella sp. 6_1_27]
          Length = 133

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   +   + ++K  D V VK+L  
Sbjct: 4   EVGNIIDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYIEDINTLLKVEDPVKVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D   KI LS++      G  
Sbjct: 64  DG-NKIGLSIRQTQPKEGMD 82


>gi|212223383|ref|YP_002306619.1| translation initiation factor IF-2 subunit alpha [Thermococcus
           onnurineus NA1]
 gi|229847552|sp|B6YT35|IF2A_THEON RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|212008340|gb|ACJ15722.1| translation initiation factor eIF-2, alpha subunit [Thermococcus
           onnurineus NA1]
          Length = 275

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V  +  +GAF+       ++G +HIS++++  V    D VKE
Sbjct: 1   MPRKAKEYPEEGEFVIATVKSIHPYGAFLKLDEYPGKEGFMHISEVASTWVKNIRDYVKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  V  K++  D ++G I LS+K V+Q   K
Sbjct: 61  GQKVVAKVIRVDPNKGHIDLSLKRVNQQQRK 91


>gi|119482079|ref|XP_001261068.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
 gi|119409222|gb|EAW19171.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
          Length = 1819

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--G 641
            +V + D    ++  S    +              +V ++  G+V KV +FGAF+      
Sbjct: 1284 RVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQVVTGKVRKVEEFGAFIVIDRSA 1343

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     + +EGD V  K++  D + GKI  S+K 
Sbjct: 1344 NVSGLCHRSEMADKRVDDARTLYEEGDVVKAKIIKVDRESGKISFSLKA 1392



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN + +G V +V D G FV         V +S LS   + +  D  + 
Sbjct: 1218 QDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSYLKEWKDSFQV 1277

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D ++G++++S+K  V+D     PI
Sbjct: 1278 DQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPI 1312



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +   GA V F G+  G + +S++S   +   S   ++G  V V  L  D   GK+
Sbjct: 656 GTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKL 715

Query: 684 KLSMKV 689
            +S K 
Sbjct: 716 AVSCKD 721


>gi|157151257|ref|YP_001450091.1| hypothetical protein SGO_0792 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076051|gb|ABV10734.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 710

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKISKNFVKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|255692061|ref|ZP_05415736.1| protein YhgF [Bacteroides finegoldii DSM 17565]
 gi|260622311|gb|EEX45182.1| protein YhgF [Bacteroides finegoldii DSM 17565]
          Length = 710

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           ++    + +R+I D+ E   I  G V  + +FGAFV      +GLVH+SQL+   ++  +
Sbjct: 619 KVFEFDKNVRTIADLREG-MILPGIVGNITNFGAFVDIGIKENGLVHLSQLAERYISDPT 677

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           ++V     V V++++ D DR +I+LSM  V Q+
Sbjct: 678 EIVSIHQHVMVRVMNVDTDRKRIQLSMIGVPQD 710


>gi|330507638|ref|YP_004384066.1| translation initiation factor 2 subunit alpha [Methanosaeta
           concilii GP-6]
 gi|328928446|gb|AEB68248.1| translation initiation factor 2, alpha subunit [Methanosaeta
           concilii GP-6]
          Length = 257

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   +    V +V+DFGAFV       + GL+HIS++++  +    D V+EG  +  K+
Sbjct: 7   PEPGSLVVCTVTQVVDFGAFVSIDEYAGKQGLIHISEVASGWIKYIRDHVREGQKIVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKP 697
           L+ D  R  I LS+K V+++  + 
Sbjct: 67  LNVDTSRHHIDLSLKDVNEHQRRE 90


>gi|302847311|ref|XP_002955190.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
           nagariensis]
 gi|300259482|gb|EFJ43709.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
           nagariensis]
          Length = 431

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA---IPPDQIRNVIGM 569
               +   +++              ++S + ++   F  R+  +    I        +  
Sbjct: 180 PLEALRPGMKRDFMVVQDEEEYGQVIVSLAAMEATTFWTRIRQLQEEDITVSVTVESVNK 239

Query: 570 GGKVIRGIV-------EQTGAKVNIDD-------DGTVKIASSSLAE------IEAAREM 609
           GG +++  +        Q G  +  D        +  VK               + A  M
Sbjct: 240 GGMLVKFGIYDGFIPVSQFGPSITADSMESLIGYELQVKFLEVDEEAERLVFSHKRASSM 299

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + +     +V  +  G V  V  +GAF+   G   GL+H+SQLS +RV     ++ EGD 
Sbjct: 300 VTNDVQGFKVGDVVAGVVQSVKPYGAFIDL-GGVTGLLHVSQLSHDRVLVLDKILAEGDK 358

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + V +L  D DRG++ LS K ++   G
Sbjct: 359 IKVMILSQDRDRGRVTLSTKKLEPTPG 385


>gi|262282625|ref|ZP_06060393.1| S1 RNA binding domain-containing protein [Streptococcus sp.
           2_1_36FAA]
 gi|262261916|gb|EEY80614.1| S1 RNA binding domain-containing protein [Streptococcus sp.
           2_1_36FAA]
          Length = 710

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS++S   V   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKISKNFVKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|270292435|ref|ZP_06198646.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
 gi|270278414|gb|EFA24260.1| S1 RNA binding domain-containing protein [Streptococcus sp. M143]
          Length = 119

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GL+HIS++ T  +    +V+K G+ V V+++D
Sbjct: 1   MKIGDKLNGRITGIQPYGAFVELETGVIGLIHISEIRTGFIENIYEVLKIGEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFSGKASLSIRTLEEE 78


>gi|218677795|ref|ZP_03525692.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CIAT 894]
          Length = 195

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ 
Sbjct: 108 KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEV 167

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D  R +I LSMK  D +   P
Sbjct: 168 DAKRKRIALSMKRDDGSAAPP 188


>gi|218508377|ref|ZP_03506255.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli Brasil 5]
          Length = 187

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYK 624
           I++    +  ID+   +      +AE+E      R            +     +   + +
Sbjct: 13  ILKSIDPRQFIDETFGLPTVRDIIAELEKPGRDPRPSFKTATFAEGVNEISDLKPGMVLE 72

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R +I
Sbjct: 73  GTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRI 132

Query: 684 KLSMKVVDQNTGKP 697
            LSMK  D +   P
Sbjct: 133 ALSMKRDDGSAAPP 146


>gi|218245301|ref|YP_002370672.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257058336|ref|YP_003136224.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
 gi|218165779|gb|ACK64516.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
 gi|256588502|gb|ACU99388.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
          Length = 302

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 20/184 (10%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +    +  K  ++ ++      +      L  F PR  ++    D +  ++G     
Sbjct: 111 WEKVAEIAETGKTVQMRVIGTNKGGVIGDVEGLRGFIPRSHLLE--KDNLDALVG----- 163

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
              ++     +VN DD+   K+  S    I AA+    +  ++        G+V K+  +
Sbjct: 164 --QLLTANFLEVNPDDN---KLVLSQRRVIMAAQMDKITAGNLI------TGKVAKIQPY 212

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G FV       GL+HI+Q+S  R+   + + K G  + V +L+ D+ +G+I LS KV++ 
Sbjct: 213 GIFVDL-NGVTGLLHITQISGLRIDDLNTLFKFGQEIQVMILNIDEYKGRISLSTKVLEN 271

Query: 693 NTGK 696
             G+
Sbjct: 272 YPGE 275



 Score = 39.5 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D  + K +  S +  + A+ + +      E  ++ +G VV+    GA+V   G   G V 
Sbjct: 4   DSTSRKSSQISFSMDDFAKALDQHD-YTFEKGQVVRGTVVQHTSDGAYVDIGGKSSGFVP 62

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD-QNTGKPIV 699
           + + S +     ++V+   +     ++ D +  G++KLS + +  Q   + + 
Sbjct: 63  LREASLDSTPNLAEVLPLNEEAEFLIISDQNSEGQVKLSCRQLQLQQAWEKVA 115


>gi|315638685|ref|ZP_07893859.1| 30S ribosomal protein S1 [Campylobacter upsaliensis JV21]
 gi|315481309|gb|EFU71939.1| 30S ribosomal protein S1 [Campylobacter upsaliensis JV21]
          Length = 557

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +     +   +V  + +G V  +  FGAFV      +GL+H    S +R  K  ++ K G
Sbjct: 364 KPFDEFSKTHKVGDMTQGIVTSITAFGAFVKI-DNVEGLLHNEDASWDRNDKCKELFKIG 422

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           D + VK++  D+   KI LS K +  + 
Sbjct: 423 DEIKVKIIKIDEDNQKISLSTKELKNSP 450



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV+ ++   V      L +    R+ I S   + + N++ +G V K+  +G FV   G 
Sbjct: 169 IKVDKEEQSIVASRKRVLEDERKKRKEIISE--ILDKNELIEGLVKKITTYGMFVDV-GG 225

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWV-KLLDFDDRGKIKLSMKVVDQNTGKPI 698
            DGLVH S++S +     S + KEGD V V  +    D+  + LS+K    +    I
Sbjct: 226 IDGLVHYSEISYKGPVNPSSLYKEGDKVPVKIIKYDKDKKHLSLSIKAALPDPWSEI 282



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I ++   K+   D+   KI+ S+          ++      +V  + KG +  + DFG 
Sbjct: 420 KIGDEIKVKIIKIDEDNQKISLSTKELKN---SPVQEYAKTHKVGDVVKGMIRDIKDFGI 476

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV      D L+H   +S+       + +K  D +   +   D++  +I+LS+K + +  
Sbjct: 477 FVELSENVDALIHKEDISSA----MLETLKIDDEIEAAIAFIDEKKNRIRLSVKNLLKLK 532

Query: 695 GKPIV 699
            + ++
Sbjct: 533 EREVL 537


>gi|238882053|gb|EEQ45691.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1726

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN   +G + +           + M     D  ++  I++G V    DFG FV   G
Sbjct: 1204 GKIVNCKQEGRILMTLKESEVNGELKIMK--TFDDLQIGDIFEGTVTSTTDFGVFVKLDG 1261

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
                 GL H S++S   V     +   GD V VK+L  D   + + L MK 
Sbjct: 1262 TVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMKA 1312



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           K +  G  V F G     +  +++S   V   S  +K G  V V++LD + ++ ++ +++
Sbjct: 597 KFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDINKEQKRLVVTL 656

Query: 688 KV 689
           K 
Sbjct: 657 KQ 658



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 4/157 (2%)

Query: 546  LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE--- 602
            +   T  +  ++I P     +  +       I +    K+ I +   VK+    L     
Sbjct: 987  VNNITNGMVWVSISPSIKGRIPMLDLTEDGSIFQDIDNKLPIGNAINVKVKQVDLQHQIL 1046

Query: 603  IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +  AR+      +    ++ Y  +++K+      V           ++    +   K   
Sbjct: 1047 VLTARKNFIEKFEDVRQDQTYPARIIKIKPNHVLVELGNNVIASSFVTDALNDYSDKLDH 1106

Query: 663  VVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            V    D V  K+LD D    +I +S++     + K I
Sbjct: 1107 VFNVNDYVSAKVLDIDSTNKRISVSLRTDKAGSDKVI 1143



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%)

Query: 587  IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            +D D T K  S SL   +A  + + +        ++ KG V  + + G +V    +   L
Sbjct: 1119 LDIDSTNKRISVSLRTDKAGSDKVINSISDLTRGQVIKGFVKNISNNGVYVSLGRSIYAL 1178

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            V +S LS   +    +  K    V  K+++    G+I +++K 
Sbjct: 1179 VRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQEGRILMTLKE 1221


>gi|224437368|ref|ZP_03658340.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
 gi|313143833|ref|ZP_07806026.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
 gi|313128864|gb|EFR46481.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
          Length = 550

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E + +  G V K+  FG FV   G  +GLVH ++LS +     +   KEGD V VK+L +
Sbjct: 197 ENDGVQNGVVAKIAPFGIFVDI-GGIEGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGY 255

Query: 678 DDRG-KIKLSMKVVDQNTGKPI 698
           D++  ++ LSMK +  +  K I
Sbjct: 256 DEKKRRLSLSMKALGDDPWKEI 277



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +V ++ KG++  + DFGAFV      DGL+H      ++  K  +  K G
Sbjct: 359 KPFAKFAKTHQVGEVIKGKIATLTDFGAFVKL-DGVDGLLHNEDAFWDKELKCKNEFKVG 417

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           D + VK++  D +  +I LS K++D +  K 
Sbjct: 418 DEIEVKIIKIDKENERISLSKKLLDHSPAKE 448



 Score = 44.9 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID +      S  L +   A+E  ++     +V+ +   +V+ V DFG FV      +
Sbjct: 425 IKIDKENERISLSKKLLDHSPAKEFAKT----HKVDDVVNAKVIDVKDFGVFVKIDEM-E 479

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            L+    +      K  ++V  G  +   +   D +  K++ S+K +++   K  +
Sbjct: 480 ALIRNDDIY---PLKKDEIVS-GQEIECVITHIDEENNKVRASIKRLERQKEKETL 531


>gi|68466849|ref|XP_722620.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
 gi|68467128|ref|XP_722479.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444457|gb|EAL03732.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444607|gb|EAL03881.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
          Length = 1722

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN   +G + +           + M     D  ++  I++G V    DFG FV   G
Sbjct: 1200 GKIVNCKQEGRILMTLKESEVNGELKIMK--TFDDLQIGDIFEGTVTSTTDFGVFVKLDG 1257

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
                 GL H S++S   V     +   GD V VK+L  D   + + L MK 
Sbjct: 1258 TVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMKA 1308



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           K +  G  V F G     +  +++S   V   S  +K G  V V++LD + ++ ++ +++
Sbjct: 593 KFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKRLVVTL 652

Query: 688 KV 689
           K 
Sbjct: 653 KQ 654



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 4/157 (2%)

Query: 546  LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE--- 602
            +   T  +  ++I P     +  +       I +    K+ I +   VK+    L     
Sbjct: 983  VNNITNGMVWVSISPTIKGRIPMLDLTEDGSIFQDIDNKLPIGNAINVKVKQVDLQHQIL 1042

Query: 603  IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
            +  AR+      +    ++ Y  +++K+      V           ++    +   K   
Sbjct: 1043 VLTARKNFIEKFEDVRQDQTYPARIIKIKPNHVLVELGNNVIASSFVTDALNDYSDKLDH 1102

Query: 663  VVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            V    D V  K+LD D    +I +S++     + K I
Sbjct: 1103 VFNVNDYVSAKVLDIDSTNKRISVSLRTDKAGSDKVI 1139



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%)

Query: 587  IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            +D D T K  S SL   +A  + + +        ++ KG V  + + G +V    +   L
Sbjct: 1115 LDIDSTNKRISVSLRTDKAGSDKVINSISDLTRGQVIKGFVKNISNNGVYVSLGRSIYAL 1174

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            V +S LS   +    +  K    V  K+++    G+I +++K 
Sbjct: 1175 VRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQEGRILMTLKE 1217


>gi|326502718|dbj|BAJ98987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 371

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGDTV 
Sbjct: 172 VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVK 231

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNT 694
           V +++ D ++ +I LS++ ++++ 
Sbjct: 232 VIVVNVDAEKSRIGLSIRQLEEDP 255


>gi|148284972|ref|YP_001249062.1| 30S ribosomal protein S1 [Orientia tsutsugamushi str. Boryong]
 gi|146740411|emb|CAM80880.1| 30S ribosomal protein S1 [Orientia tsutsugamushi str. Boryong]
          Length = 507

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 10/120 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCG------ 641
           D     I  S  A +E AR  IR        V  I  G V  ++ +GAF+   G      
Sbjct: 195 DKKLGNIVVSRRAVLEEARAGIRQEVLSKIHVGMILNGVVKSIVYYGAFIELTGSDELTF 254

Query: 642 --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
               DGL+H   +   ++    + ++ G  V V ++  D   G+I L MK +  N    I
Sbjct: 255 DVKVDGLLHSINILWRKINHPGEELQIGQQVRVVVIGIDISTGQISLGMKQLSANPWDDI 314



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEG 667
               I +  ++  I  G+V  + ++GAF+      +GL H   L  E++       +  G
Sbjct: 310 PWDDIENSLQIGDIKVGKVKSIAEYGAFIEVTKDLEGLCHSGHLGWEKINQNPKKSLTIG 369

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V  K+LD D +R +I LS+K+   N  +
Sbjct: 370 QEVVFKILDIDKERHRISLSLKLCKPNPWE 399



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 28/137 (20%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID +      S  L +          + +  +V  + +  +  + +FG FV
Sbjct: 370 QEVVFKILDIDKERHRISLSLKLCKPN----PWEVLAEKYQVGTVIRAPLRNITNFGMFV 425

Query: 638 ---------------------HFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKL 674
                                      DG++H S +       ++ +    +GD +   +
Sbjct: 426 ALSVTTNAVKYEIDGKEYEIGEMTYQIDGMIHESDILKHGDTNSNSLKNYTKGDEIECMV 485

Query: 675 LDFD-DRGKIKLSMKVV 690
           L  D ++ +I L +K +
Sbjct: 486 LAVDVEKERINLGIKQL 502


>gi|146422384|ref|XP_001487131.1| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 9/148 (6%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVP 617
           P  +      +  + I   +     K+   +    K                        
Sbjct: 101 PIKKESQPYPVKSEPIYSGLSLPNVKIEPQESHIKKEPKIKKESQIKDEIPGSEGYEPKL 160

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLS--TERVAKTSDVVKEGDTVWV 672
           EV +I  G V  ++ +GAF+     +    GL H+SQL+    ++   S VVK    V+V
Sbjct: 161 EVGEIVTGAVSNIVPYGAFIRLQSGKKSVVGLCHVSQLTFTGTKILSPSQVVKVDQQVFV 220

Query: 673 KLLDFDDRG---KIKLSMKVVDQNTGKP 697
           K+   + +G   +  LSM+ +DQ+TG  
Sbjct: 221 KITKIETQGRRERFSLSMRGIDQDTGLD 248


>gi|94263173|ref|ZP_01286991.1| RNA binding S1 [delta proteobacterium MLMS-1]
 gi|93456544|gb|EAT06658.1| RNA binding S1 [delta proteobacterium MLMS-1]
          Length = 410

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +               +G+V ++ DFGAFV      DGLVHIS+L +  R+    +VV+ 
Sbjct: 263 DPWEQAAVSFPEGSTQRGRVARLTDFGAFVTLAPGVDGLVHISKLGAGRRLNHPREVVQV 322

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V++   D ++ +I L    V   TG
Sbjct: 323 GDELEVRVEAVDVEQKRISL---AVAPPTG 349



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           + G   + S      +  +E+   +    +V  +  G V  V DFGAFV   G  +GL+ 
Sbjct: 159 EGGKNILLSRRQLLEQERQELKEQLRQSLKVGDLVTGTVTSVRDFGAFVDI-GGIEGLIP 217

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           IS++   RV      ++ G  V V +   D ++ +  LS+K    +  +
Sbjct: 218 ISEIGWGRVEDIHSHLEPGRQVEVAVKSLDWEKDRYSLSLKDTLPDPWE 266



 Score = 39.1 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    KI ++ +    A   +  +      V    + +       G  +   G+      
Sbjct: 75  DKKNEKIFTTKVGGAAAQAHLEEAFHGKVPVEGTVESETKG----GFLIRIGGSSRAFCP 130

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            SQ+   R A   + +  G +    +++F + GK I LS + + +   + +
Sbjct: 131 YSQMDLRRAANPEEYL--GQSFSFLIMEFREGGKNILLSRRQLLEQERQEL 179


>gi|317474257|ref|ZP_07933533.1| hypothetical protein HMPREF1016_00512 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909567|gb|EFV31245.1| hypothetical protein HMPREF1016_00512 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 711

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HI+ +M+K L  S  +L     +   + I P++  +   +G   ++ I+++   K   D 
Sbjct: 560 HIVEQMAKDLGCSVAEL--IADKELRLKIQPERYLSPT-VGMPTLKDILQEL-EKPGRDP 615

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G +K+      +     + +R   ++P       G V  + +FGAFV      +GL+H+
Sbjct: 616 RGPIKVFEF--DKNVRTIDDLRIGMELP-------GIVSNITNFGAFVDIGIKENGLIHL 666

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           SQL+ + V+  +++V     V VK+L  D +R +I+L+M  V+
Sbjct: 667 SQLAQKYVSDPNEIVSIHQQVRVKILGVDTERKRIQLTMIGVE 709


>gi|326490501|dbj|BAJ84914.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 369

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            ++  IY G V  V  +GAFVH           GLVHIS++S + V    D + EGDTV 
Sbjct: 170 VKIGGIYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVK 229

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNT 694
           V +++ D ++ +I LS++ ++++ 
Sbjct: 230 VIVVNVDAEKSRIGLSIRQLEEDP 253


>gi|94268201|ref|ZP_01291117.1| RNA binding S1 [delta proteobacterium MLMS-1]
 gi|93451696|gb|EAT02473.1| RNA binding S1 [delta proteobacterium MLMS-1]
          Length = 410

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +               +G+V ++ DFGAFV      DGLVHIS+L +  R+    +VV+ 
Sbjct: 263 DPWEQAAVSFPEGSTQRGRVARLTDFGAFVTLAPGVDGLVHISKLGAGRRLNHPREVVQV 322

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD + V++   D ++ +I L    V   TG
Sbjct: 323 GDELEVRVEAVDVEQKRISL---AVAPPTG 349



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           + G   + S      +  +E+   +    +V  +  G V  V DFGAFV   G  +GL+ 
Sbjct: 159 EGGKNILLSRRQLLEQERQELKEQLRQSLKVGDLVTGTVTSVRDFGAFVDI-GGIEGLIP 217

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           IS++   RV      ++ G  V V +   D D+ +  LS+K    +  +
Sbjct: 218 ISEIGWGRVEDIHSHLEPGRQVEVAVKSLDWDKDRYSLSLKDTLPDPWE 266



 Score = 39.1 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    KI ++ +    A   +  +      V    + +       G  +   G+      
Sbjct: 75  DKKNEKIFTTKVGGAAAQAHLEEAFHGKVPVEGTVESETKG----GFLIRIGGSSRAFCP 130

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            SQ+   R A   + +  G +    +++F + GK I LS + + +   + +
Sbjct: 131 YSQMDLRRAANPEEYL--GQSFSFLIMEFREGGKNILLSRRQLLEQERQEL 179


>gi|218130719|ref|ZP_03459523.1| hypothetical protein BACEGG_02310 [Bacteroides eggerthii DSM 20697]
 gi|217987063|gb|EEC53394.1| hypothetical protein BACEGG_02310 [Bacteroides eggerthii DSM 20697]
          Length = 711

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
           HI+ +M+K L  S  +L     +   + I P++  +   +G   ++ I+++   K   D 
Sbjct: 560 HIVEQMAKDLGCSVAEL--IADKELRLKIQPERYLSPT-VGMPTLKDILQEL-EKPGRDP 615

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G +K+      +     + +R   ++P       G V  + +FGAFV      +GL+H+
Sbjct: 616 RGPIKVFEF--DKNVRTIDDLRIGMELP-------GIVSNITNFGAFVDIGIKENGLIHL 666

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           SQL+ + V+  +++V     V VK+L  D +R +I+L+M  V+
Sbjct: 667 SQLAQKYVSDPNEIVSIHQQVRVKILGVDTERKRIQLTMIGVE 709


>gi|313894651|ref|ZP_07828214.1| S1 RNA binding domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440841|gb|EFR59270.1| S1 RNA binding domain protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 133

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   V   + ++K  D V VK+L  
Sbjct: 4   EVGNIVDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYVEDINTLLKVEDAVKVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKPIV 699
           D   KI LS++   Q   K +V
Sbjct: 64  DG-NKIGLSIR---QTQPKEVV 81


>gi|259503809|ref|ZP_05746711.1| YhgF like protein [Lactobacillus antri DSM 16041]
 gi|259168188|gb|EEW52683.1| YhgF like protein [Lactobacillus antri DSM 16041]
          Length = 724

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 594 KIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K        + A       +T    +     +G V  V+DFGAFV      DGLVHIS++
Sbjct: 621 KPGRDLRDSMPAPLLRHDVMTIEDLKPGMQLQGTVRNVVDFGAFVDIGVKHDGLVHISKM 680

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           + +       VV  GD V V +   D  R +I+L+M
Sbjct: 681 TKKFTRDPRSVVSVGDIVDVWIDSVDLKRQRIQLTM 716


>gi|319947539|ref|ZP_08021769.1| general stress protein 13 [Streptococcus australis ATCC 700641]
 gi|319746227|gb|EFV98490.1| general stress protein 13 [Streptococcus australis ATCC 700641]
          Length = 122

 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            KG V  +  +GAFV       GL+HIS++ +  +    D++K GD V  +++D D+  G
Sbjct: 7   LKGVVTGLQPYGAFVELETGVTGLIHISEIRSGYIDNIHDILKIGDQVCTQVIDIDEYSG 66

Query: 682 KIKLSMKVVD 691
           K  LS++ ++
Sbjct: 67  KASLSLRTLE 76


>gi|194468066|ref|ZP_03074052.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|194452919|gb|EDX41817.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
          Length = 725

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I      NV  +G       +++   K   DD    +  +  ++ ++     +R     
Sbjct: 573 KIIQAAGINVDELGTPSADDKLKKIDVKQFTDDQVGTETVTDIISSLQKPGRDLRDSMPA 632

Query: 617 P------------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           P            +     +G V  V+DFGAFV      DGLVH+S++S + +     +V
Sbjct: 633 PLLRHDVMTIEDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIRDPRAMV 692

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             GD V V + D D  R +I+L+M  ++  T
Sbjct: 693 AVGDIVDVWIDDVDLKRQRIQLTMLELETVT 723


>gi|313884724|ref|ZP_07818480.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620092|gb|EFR31525.1| S1 RNA binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 136

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G +  + D+G FV     + GLVHIS+     V+   +  K G  V V ++D D
Sbjct: 7   IGDVLTGTISGIQDYGVFVQLDETKQGLVHISECRHGFVSNLEEEFKLGQEVKVMIIDID 66

Query: 679 D-RGKIKLSMKVV 690
           +   ++ LS++V+
Sbjct: 67  EYTQQVSLSIRVL 79


>gi|254779609|ref|YP_003057715.1| 30S ribosomal protein S1 [Helicobacter pylori B38]
 gi|254001521|emb|CAX29539.1| 30S ribosomal protein S1 [Helicobacter pylori B38]
          Length = 556

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDIVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSTKHL 446



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPALGI 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         K+GD V+VK + +D ++ ++ L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKKGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 41.4 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLS 686
            +   ++  +    K++ S
Sbjct: 505 EITCVVVAIEKSNNKVRAS 523


>gi|57242230|ref|ZP_00370169.1| ribosomal protein S1, putative [Campylobacter upsaliensis RM3195]
 gi|57016910|gb|EAL53692.1| ribosomal protein S1, putative [Campylobacter upsaliensis RM3195]
          Length = 557

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
                ++ I  G ++   ++E     +N D+        + L+      +     +   +
Sbjct: 326 NIKNPKDYISKGEEIDVEVIE-----INSDERRLRVSLRNLLS------KPFDEFSKTHK 374

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + +G V  +  FGAFV      +GL+H    S +R  K  ++ K GD + VK++  D
Sbjct: 375 VGDMTQGIVTSITAFGAFVKI-DNVEGLLHNEDASWDRNDKCKELFKIGDEIKVKIIKID 433

Query: 679 -DRGKIKLSMKVVDQNT 694
            D  KI LS K +  + 
Sbjct: 434 EDHQKISLSTKELKNSP 450



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 556 MAIPPDQIRNVIGMGGKVIRG----IVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMI 610
           +A+  D +   I       +     I +    K+  +D +    +AS      +  ++  
Sbjct: 135 VAVDNDGVEFFIPKSQYSFKNSNNPIGKNFKVKIIKVDKEEQSIVASRKRVLEDERKKRK 194

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
             I+++ + N++ +G V K+  +G FV   G  DGLVH S++S +     S + KEGD V
Sbjct: 195 EIISEILDKNELIEGLVKKITTYGIFVDV-GGIDGLVHYSEISYKGPVNPSSLYKEGDKV 253

Query: 671 WV-KLLDFDDRGKIKLSMKVVDQNTGKPI 698
            V  +    D+  + LS+K    +    I
Sbjct: 254 PVKIIKYDKDKKHLSLSIKAALPDPWSEI 282



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I ++   K+   D+   KI+ S+          ++      ++  + KG +  + DFG 
Sbjct: 420 KIGDEIKVKIIKIDEDHQKISLSTKELKN---SPVQEYAKTHKIGDVVKGIIRDIKDFGI 476

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNT 694
           FV      D L+H   +S+       + +K  D +   +   D++  +I+LS+K + +  
Sbjct: 477 FVELSENVDALIHKEDISSA----MLETLKIDDEIEAAIAFIDEKKNRIRLSVKNLLRLK 532

Query: 695 GKPIV 699
            + ++
Sbjct: 533 EREVL 537


>gi|306821676|ref|ZP_07455273.1| S1-type RNA-binding domain protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550258|gb|EFM38252.1| S1-type RNA-binding domain protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 149

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V+ +  +G FV     + GLVHISQ+S E +   + +++ GD + VK+L  
Sbjct: 6   EVGSIISGTVINIKPYGIFVSIGKNQKGLVHISQVSDEYIRDINQILRSGDKINVKVLS- 64

Query: 678 DDRGKIKLSMKVVDQN 693
           ++ GK+ LS+K V ++
Sbjct: 65  NEEGKVSLSIKDVPKD 80


>gi|229547569|ref|ZP_04436294.1| RNA binding protein [Enterococcus faecalis TX1322]
 gi|229307259|gb|EEN73246.1| RNA binding protein [Enterococcus faecalis TX1322]
 gi|315169355|gb|EFU13372.1| putative general stress protein 13 [Enterococcus faecalis TX1341]
          Length = 128

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M R      ++  +  G +  +  +GAFV       GL+H+S++          ++  G 
Sbjct: 1   MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQ 60

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVD 691
            V V+++D D+   KI LS++ ++
Sbjct: 61  KVTVQVIDVDEYSQKISLSLRTLE 84


>gi|303228489|ref|ZP_07315320.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516847|gb|EFL58758.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 725

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV- 616
           +  D++ + +  G   +R I+               K       ++ A       ++   
Sbjct: 595 VDVDKMAHKLDAGIPTVRDIIAALA-----------KPGRDPREDLPAPLTRKHVVSLED 643

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  + KG V  V+DFGAF+ F    +GL+H S+L T +    SDV+  GD +  +++ 
Sbjct: 644 IKVGTVVKGTVHNVVDFGAFIDFGLKTNGLLHRSELCTAK-QHPSDVLAVGDIIEAEIIS 702

Query: 677 FD-DRGKIKLSMKVV 690
            D  R +I LS+K +
Sbjct: 703 VDVKRNRIGLSVKSL 717


>gi|312869800|ref|ZP_07729942.1| Tex-like protein N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311094646|gb|EFQ52948.1| Tex-like protein N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 724

 Score = 73.8 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 594 KIASSSLAEIEAAREMIRSITDV-PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           K        + A       +T    +     +G V  V+DFGAFV      DGLVHIS++
Sbjct: 621 KPGRDLRDSMPAPLLRHDVMTIEDLKPGMQLQGTVRNVVDFGAFVDIGVKHDGLVHISKM 680

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           + +       VV  GD V V +   D  R +I+L+M
Sbjct: 681 TKKFTRDPRSVVSVGDIVDVWIDSVDLKRQRIQLTM 716


>gi|317182308|dbj|BAJ60092.1| 30S ribosomal protein S1 [Helicobacter pylori F57]
          Length = 552

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+VV + DFGAF+
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVVTLTDFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSTKHL 442



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVEV-KGVEGLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|257469004|ref|ZP_05633098.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063251|ref|ZP_07927736.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688927|gb|EFS25762.1| transcription accessory protein [Fusobacterium ulcerans ATCC 49185]
          Length = 721

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D D +R +
Sbjct: 654 EGTVRNVVKFGAFVDIGLKNDALLHISEISNKFIDDPSKVLSVGQIIKVRIKDVDKERER 713

Query: 683 IKLSMKVV 690
           + L+ K +
Sbjct: 714 VALTKKEI 721


>gi|303231882|ref|ZP_07318593.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513489|gb|EFL55520.1| Tex-like protein N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 725

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV- 616
           +  D++ + +  G   +R I+               K       ++ A       ++   
Sbjct: 595 VDVDKMAHKLDAGIPTVRDIIAALA-----------KPGRDPREDLPAPLTRKHVVSLED 643

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  + KG V  V+DFGAF+ F    +GL+H S+L T +    SDV+  GD +  +++ 
Sbjct: 644 IKVGTVVKGTVHNVVDFGAFIDFGLKTNGLLHRSELCTAK-QHPSDVLAVGDIIEAEIIS 702

Query: 677 FD-DRGKIKLSMKVV 690
            D  R +I LS+K +
Sbjct: 703 VDVKRNRIGLSVKSL 717


>gi|186681340|ref|YP_001864536.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186463792|gb|ACC79593.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
          Length = 300

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S   + E+ ++ +G+V  +  FG FV   G    L+HI Q+S + +     V K G  + 
Sbjct: 191 SNFSLLELGQLVEGKVTGIKPFGVFVDLNGMG-ALLHIKQVSQKFIDSLEKVFKVGQPIK 249

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
             ++D D+ +G++ LS +V++   G+
Sbjct: 250 AVIIDLDEGKGRVALSTRVLENFPGE 275



 Score = 39.1 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            A+SS    + A+ + +      +  ++  G+V ++   GA+V   G     +   + S 
Sbjct: 10  TANSSFTMDDFAKALEKHDYQFQKG-QVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEASL 68

Query: 655 ERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             V   S+V+   + +   ++ D D  G++ LS K ++
Sbjct: 69  RAVTDLSEVLPLQEEMQFLIIRDQDAEGQVTLSRKQLE 106


>gi|227204349|dbj|BAH57026.1| AT5G30510 [Arabidopsis thaliana]
          Length = 378

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 263 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 321

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 322 RDRGRVSLSTKKLEPTPG 339


>gi|227518237|ref|ZP_03948286.1| RNA binding protein [Enterococcus faecalis TX0104]
 gi|227554342|ref|ZP_03984389.1| RNA binding protein [Enterococcus faecalis HH22]
 gi|229548224|ref|ZP_04436949.1| RNA binding protein [Enterococcus faecalis ATCC 29200]
 gi|293382124|ref|ZP_06628067.1| general stress protein 13 [Enterococcus faecalis R712]
 gi|293388565|ref|ZP_06633068.1| general stress protein 13 [Enterococcus faecalis S613]
 gi|307268821|ref|ZP_07550188.1| putative general stress protein 13 [Enterococcus faecalis TX4248]
 gi|307275139|ref|ZP_07556293.1| putative general stress protein 13 [Enterococcus faecalis TX2134]
 gi|307278526|ref|ZP_07559598.1| putative general stress protein 13 [Enterococcus faecalis TX0860]
 gi|307287409|ref|ZP_07567468.1| putative general stress protein 13 [Enterococcus faecalis TX0109]
 gi|307290846|ref|ZP_07570740.1| putative general stress protein 13 [Enterococcus faecalis TX0411]
 gi|312900372|ref|ZP_07759682.1| putative general stress protein 13 [Enterococcus faecalis TX0470]
 gi|312902938|ref|ZP_07762135.1| putative general stress protein 13 [Enterococcus faecalis TX0635]
 gi|312905780|ref|ZP_07764802.1| putative general stress protein 13 [Enterococcus faecalis DAPTO
           512]
 gi|312909024|ref|ZP_07767884.1| putative general stress protein 13 [Enterococcus faecalis DAPTO
           516]
 gi|312952166|ref|ZP_07771044.1| putative general stress protein 13 [Enterococcus faecalis TX0102]
 gi|227074333|gb|EEI12296.1| RNA binding protein [Enterococcus faecalis TX0104]
 gi|227176519|gb|EEI57491.1| RNA binding protein [Enterococcus faecalis HH22]
 gi|229306703|gb|EEN72699.1| RNA binding protein [Enterococcus faecalis ATCC 29200]
 gi|291080407|gb|EFE17771.1| general stress protein 13 [Enterococcus faecalis R712]
 gi|291082087|gb|EFE19050.1| general stress protein 13 [Enterococcus faecalis S613]
 gi|306498155|gb|EFM67678.1| putative general stress protein 13 [Enterococcus faecalis TX0411]
 gi|306501582|gb|EFM70878.1| putative general stress protein 13 [Enterococcus faecalis TX0109]
 gi|306504763|gb|EFM73961.1| putative general stress protein 13 [Enterococcus faecalis TX0860]
 gi|306508257|gb|EFM77373.1| putative general stress protein 13 [Enterococcus faecalis TX2134]
 gi|306514825|gb|EFM83373.1| putative general stress protein 13 [Enterococcus faecalis TX4248]
 gi|310628259|gb|EFQ11542.1| putative general stress protein 13 [Enterococcus faecalis DAPTO
           512]
 gi|310629822|gb|EFQ13105.1| putative general stress protein 13 [Enterococcus faecalis TX0102]
 gi|310633710|gb|EFQ16993.1| putative general stress protein 13 [Enterococcus faecalis TX0635]
 gi|311290586|gb|EFQ69142.1| putative general stress protein 13 [Enterococcus faecalis DAPTO
           516]
 gi|311292462|gb|EFQ71018.1| putative general stress protein 13 [Enterococcus faecalis TX0470]
 gi|315028171|gb|EFT40103.1| putative general stress protein 13 [Enterococcus faecalis TX2137]
 gi|315032266|gb|EFT44198.1| putative general stress protein 13 [Enterococcus faecalis TX0017]
 gi|315037216|gb|EFT49148.1| putative general stress protein 13 [Enterococcus faecalis TX0027]
 gi|315145439|gb|EFT89455.1| putative general stress protein 13 [Enterococcus faecalis TX2141]
 gi|315148767|gb|EFT92783.1| putative general stress protein 13 [Enterococcus faecalis TX4244]
 gi|315151692|gb|EFT95708.1| putative general stress protein 13 [Enterococcus faecalis TX0012]
 gi|315154489|gb|EFT98505.1| putative general stress protein 13 [Enterococcus faecalis TX0031]
 gi|315156377|gb|EFU00394.1| putative general stress protein 13 [Enterococcus faecalis TX0043]
 gi|315160132|gb|EFU04149.1| putative general stress protein 13 [Enterococcus faecalis TX0312]
 gi|315163249|gb|EFU07266.1| putative general stress protein 13 [Enterococcus faecalis TX0645]
 gi|315165947|gb|EFU09964.1| putative general stress protein 13 [Enterococcus faecalis TX1302]
 gi|315171791|gb|EFU15808.1| putative general stress protein 13 [Enterococcus faecalis TX1342]
 gi|315174772|gb|EFU18789.1| putative general stress protein 13 [Enterococcus faecalis TX1346]
 gi|315576382|gb|EFU88573.1| putative general stress protein 13 [Enterococcus faecalis TX0309B]
 gi|315578888|gb|EFU91079.1| putative general stress protein 13 [Enterococcus faecalis TX0630]
 gi|315580901|gb|EFU93092.1| putative general stress protein 13 [Enterococcus faecalis TX0309A]
          Length = 128

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M R      ++  +  G +  +  +GAFV       GL+H+S++          ++  G 
Sbjct: 1   MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQ 60

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVD 691
            V V+++D D+   KI LS++ ++
Sbjct: 61  KVTVQVIDVDEYSQKISLSLRTLE 84


>gi|145860184|dbj|BAF57042.1| hypothetical stress protein [Streptococcus bovis]
          Length = 118

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G +  +  +GAFV       GL+HIS++ T  +     ++K G+ V V+++DFD+   K
Sbjct: 8   TGTITGIKPYGAFVALDNGTTGLIHISEIKTGYIENIYQLLKVGEKVLVQVVDFDEFTQK 67

Query: 683 IKLSMKVVDQN 693
             LS++ +++ 
Sbjct: 68  ASLSLRTLEEE 78


>gi|300871842|ref|YP_003786715.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
 gi|300689543|gb|ADK32214.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
          Length = 556

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            +AIP      +I     +I    E+    +++D +           E     +      
Sbjct: 220 FLAIPNMSWAKIINPK-NIITKGEERKFQVLSVDKEKRKVDLGIKQLEG----DTWYKFV 274

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVK 673
           +   V  I KG+V  V  FGAFV+     +GL+H+S LS    V   +D VK G  +  K
Sbjct: 275 EEYHVGDIIKGEVTTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECK 334

Query: 674 LLDFD-DRGKIKLSMKVVDQNTG 695
           +LD +    K+ L +K V  N  
Sbjct: 335 ILDMNVPERKLTLGLKQVKDNPW 357



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM-IRSITDVPEVNKIYKG 625
           I  G K    I ++   K+ ID  G   I  S     E  +   I       +   I +G
Sbjct: 141 ISRGIKEADYIGKEFQFKI-IDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEGDIVEG 199

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +V  +  FGAF+      DG + I  +S  ++    +++ +G+    ++L  D ++ K+ 
Sbjct: 200 KVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKEKRKVD 259

Query: 685 LSMKVVDQNTG 695
           L +K ++ +T 
Sbjct: 260 LGIKQLEGDTW 270



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             R          I  G V  ++D G  V      +G +HISQ+   +      V+K G+
Sbjct: 443 PWRVFDKAHPHGSIVNGTVKAIIDSGVIVSLENDLEGYMHISQIDLPKGETLESVLKVGE 502

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           +    + + +  + +I LS +   +   K
Sbjct: 503 SYPFVVREVNQVKRRISLSRREYMEAENK 531



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEG 667
              S      V    K +V ++    A        +G+  IS            D +KE 
Sbjct: 356 PWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNGLEGICDISDFDWMNNTVNIKDYIKEN 415

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           + V + ++  D D+ +IKLS K   ++  +
Sbjct: 416 EEVEMVIMSIDRDKQRIKLSYKHTKESPWR 445


>gi|91773369|ref|YP_566061.1| translation initiation factor IF-2 subunit alpha [Methanococcoides
           burtonii DSM 6242]
 gi|91712384|gb|ABE52311.1| translation initiation factor a/eIF-2 alpha subunit
           [Methanococcoides burtonii DSM 6242]
          Length = 265

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE        V  V+DFGA+      G ++G +HIS++    V    D V+EG  +  K+
Sbjct: 7   PESGDFVVCTVKNVVDFGAYTTLEEYGGKEGFIHISEVKAGWVKYVRDYVREGQKIVCKV 66

Query: 675 LDFDDRGK-IKLSMKVVDQNTGK 696
           L+ D   + I LS+K V+++  +
Sbjct: 67  LNVDPNRRHIDLSLKDVNEHQKR 89


>gi|307637717|gb|ADN80167.1| SSU ribosomal protein S1p [Helicobacter pylori 908]
 gi|325996320|gb|ADZ51725.1| 30S ribosomal protein S1 [Helicobacter pylori 2018]
 gi|325997909|gb|ADZ50117.1| 30S ribosomal protein S1 [Helicobacter pylori 2017]
          Length = 552

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 31/209 (14%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 247 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDIVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVVDQNTGKP 697
           + VK+L  + +  KI LS K +  +  + 
Sbjct: 421 IKVKILKINKKDKKISLSAKHLVNSPTEE 449



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVEV-KGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F+H     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIH-ADGIDVLIKNEDLNPLK----KDEIKMGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|255556496|ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
           [Ricinus communis]
 gi|223541597|gb|EEF43146.1| tex protein-relatedtranscription accessory protein, putative
           [Ricinus communis]
          Length = 412

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +        +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ 
Sbjct: 250 RKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQP 308

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GDT+ V +L  D +RG++ LS K ++   G
Sbjct: 309 GDTLKVMILSHDRERGRVSLSTKKLEPTPG 338


>gi|307154019|ref|YP_003889403.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306984247|gb|ADN16128.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
          Length = 300

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F PR  +  +  + + +++G      + I       + ID D    + S       A
Sbjct: 143 LRAFIPRSHL--VEKEDLDSLVG------QLITANF---IQIDQDSNKLVLSQRQLVRAA 191

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A            V  + +G+V K+  +G FV   GA  GL+HI+Q+S   +   + + K
Sbjct: 192 AI-------GKLTVGTLVEGKVAKIQPYGVFVDINGAT-GLLHITQVSGVHIDSLTTIFK 243

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            G ++ V +L+ D+ + +I LS KV++   G+
Sbjct: 244 IGQSIKVLILEIDEYKNRIALSTKVLESYPGE 275


>gi|251783080|ref|YP_002997383.1| hypothetical protein SDEG_1686 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391710|dbj|BAH82169.1| S1-type RNA-binding domain [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127830|gb|ADX25127.1| hypothetical protein SDE12394_08435 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 119

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G +  +  +GAFV       GL+HIS++ T  +   + ++  GD V V+++D
Sbjct: 1   MKIGDKLHGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNINQLLTIGDKVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+   K  LS++ ++++
Sbjct: 61  VDEFTHKASLSLRTLEED 78


>gi|168013345|ref|XP_001759360.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689290|gb|EDQ75662.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 854

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           ++ G+V  V  +GAFV      +GLVH+S+L+   V   SD VK G  V V +L+ +++ 
Sbjct: 38  VFTGRVRFVQPYGAFVDIGAFTNGLVHVSELAPGYVKDVSDFVKVGQEVTVTVLEMNEKS 97

Query: 681 GKIKLSMKVVDQNTGKP 697
            +I L+M+  +     P
Sbjct: 98  KRIALTMRDRESEAAVP 114



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVK 673
             +  ++ KG V  ++  GAF+ F     +  +  S+++         +++  G  V V+
Sbjct: 147 KAKKGEVLKGTVKNIIRNGAFIEFPEQGEEAFLRGSEVTEGGENVPIENLLTVGQEVTVR 206

Query: 674 LLDFDDRGKIKLSMK 688
           +L   +RGK  L+MK
Sbjct: 207 VLKI-ERGKAYLTMK 220


>gi|315224039|ref|ZP_07865880.1| YhgF like protein [Capnocytophaga ochracea F0287]
 gi|314946010|gb|EFS98018.1| YhgF like protein [Capnocytophaga ochracea F0287]
          Length = 707

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 9/150 (6%)

Query: 547 GEFTPRVEIMAIPPD-QIRNVIGMGGKVIR-GIVEQTGAKV------NIDDDGTVKIASS 598
            E  P ++ MA      +  +IG    +    I +    KV      ++  +        
Sbjct: 556 PEAYPIIKQMAKDTGISVAQLIGNKQAIATIDIQKYKTDKVGELYLKDVLKELEKPGLDP 615

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
                  A +      D   +  I  G V  +  FG FV       GLVHISQL    V+
Sbjct: 616 RTTAKAFAFDPNVKTFDDVRIGMILPGIVNNITAFGCFVDIGVKESGLVHISQLKEGYVS 675

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
             ++VVK    V VK+++ D+ R +I L+M
Sbjct: 676 DVNEVVKLHQQVQVKVIEKDEVRKRISLNM 705


>gi|109947059|ref|YP_664287.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba]
 gi|109714280|emb|CAJ99288.1| 30S ribosomal protein S1 [Helicobacter acinonychis str. Sheeba]
          Length = 552

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      EI           ++ E  +   G 
Sbjct: 156 IGKCIKACIIRVDKENHSINISRKRFFEVNDKRQLEISK---------ELLESAEPVLGI 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 207 VRQIAPFGVFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 31/208 (14%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++         + +    I +      IG
Sbjct: 247 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQGKLKSGYAIKVVVSNIEHYGVFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPNTYLSLGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFETKYQVGDVIEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           + VK+L  + +  K+ LS K +  +  +
Sbjct: 421 IKVKILKINKKDKKVSLSAKHLLTSPTE 448



 Score = 41.4 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +++ + +G+VV + DFG F+H     D L+    L+  +     D +K G 
Sbjct: 446 PTEKFAQKHKMDSVIQGKVVSIKDFGVFIH-ADGIDVLIKNEDLNPLK----KDEIKMGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|77412776|ref|ZP_00788989.1| polyribonucleotide nucleotidyltransferase [Streptococcus
          agalactiae CJB111]
 gi|77161173|gb|EAO72271.1| polyribonucleotide nucleotidyltransferase [Streptococcus
          agalactiae CJB111]
          Length = 87

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 4  VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF 56
              E+ +AG+ L +ETG++A+Q++G+V+  YG++ VL   V  + +  G DF
Sbjct: 10 KQVFEMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTG-DF 61


>gi|194398593|ref|YP_002037544.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
 gi|194358260|gb|ACF56708.1| S1 RNA binding domain [Streptococcus pneumoniae G54]
          Length = 709

 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V K  +G V  V++FGAFV      DGL+HIS +S + +   S VV  GD V V +   D
Sbjct: 633 VGKKLEGVVRXVVNFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVAVGDLVSVWVKKID 692

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   ++ 
Sbjct: 693 TEREKVNLSLLAPNET 708


>gi|302798376|ref|XP_002980948.1| hypothetical protein SELMODRAFT_420490 [Selaginella moellendorffii]
 gi|300151487|gb|EFJ18133.1| hypothetical protein SELMODRAFT_420490 [Selaginella moellendorffii]
          Length = 452

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E++G  + ++ D T K           +  +           K+  G V  +M FGAF+ 
Sbjct: 46  EKSGVAIKVEGDSTPKKRPVLSRAPPRSFGVKDE---ELVPGKVLTGSVKAIMTFGAFID 102

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
                DGL+HIS++S   V    DV+  G  V V++   D  + +I+L    V
Sbjct: 103 LDARFDGLLHISKISDRFVQNVEDVLTVGQQVQVEIESVDLPKRRIQLKRHAV 155



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT---SDVVKEGDTVWVKLLDF 677
           ++  G V      G FV   G ++G +H +++ + R  +     ++VK G  + VK+L  
Sbjct: 272 QVVSGVVKNYTRRGCFVQLPGNQEGFLHANEIESSREQEPTPVENLVKVGQELKVKVLRI 331

Query: 678 DDRGKIKLSMKV 689
            D G+I L+MK 
Sbjct: 332 ID-GRINLTMKE 342


>gi|123965580|ref|YP_001010661.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9515]
 gi|123199946|gb|ABM71554.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
           MIT 9515]
          Length = 363

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             +  +GAF+   G   GL+HIS++S E +    +V+   D + V ++D D +RG+I LS
Sbjct: 254 KGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHNVLNVTDQMKVMIIDLDSERGRISLS 312

Query: 687 MKVVDQNTG 695
            K ++   G
Sbjct: 313 TKALEPEPG 321


>gi|153951138|ref|YP_001398034.1| 30S ribosomal protein S1 [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938584|gb|ABS43325.1| ribosomal protein S1 [Campylobacter jejuni subsp. doylei 269.97]
          Length = 556

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 570 GGKVIRGIVEQTGA----KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           G K I  I  +T      K+N D+   +     +L +    R+ + S     E   + +G
Sbjct: 151 GFKEINNITGKTFKVKIIKINKDEQSIIVSRKKTLDDERKKRKELISNIVQQE--NLIEG 208

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V K+  +G FV   G+ DGLVH S++S +       + KEGD V VK++ +D +R  + 
Sbjct: 209 IVKKITTYGMFVDV-GSVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLS 267

Query: 685 LSMKVVDQNTGKPI 698
           LS+K    +    I
Sbjct: 268 LSVKAALPDPWSEI 281



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 22/186 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KERKHLSLSVKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAK--------VNIDDDGTVKIASSSLAEIEAAR-------EMIRSITDVPEVNKIYKG 625
           +  K        +N   +  V++   + +E                      ++  + +G
Sbjct: 321 SWDKNIKNPKDYINKGQEIDVEVIEINPSERRLRVSLRNLLSRPFDEFMKSYKIADVVEG 380

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIK 684
           ++  V  FGAFV   G  +GL+H    S +R  K  D   +GD + VK++  D+   KI 
Sbjct: 381 EITSVTSFGAFVKL-GGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKIS 439

Query: 685 LSMKVV 690
           LS K +
Sbjct: 440 LSTKEL 445



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++    + +V  I KG +  + DFG FV      D L+H   +ST  +      +K GD
Sbjct: 449 PVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   ++  D++  +I+LS+K +
Sbjct: 505 YIEAAIVFIDEKKNRIRLSVKNL 527


>gi|332667406|ref|YP_004450194.1| Tex-like protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332336220|gb|AEE53321.1| Tex-like protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  + +FGAF+       GLVH+SQ++   V    +VV     V V++++ D  
Sbjct: 640 MVLPGIVENITNFGAFIDIGIKEKGLVHVSQMANRFVKNPMEVVTLRQEVSVRVVEVDIA 699

Query: 680 RGKIKLSMKVV 690
           R +++LSMK +
Sbjct: 700 RKRVQLSMKDL 710


>gi|126662739|ref|ZP_01733738.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteria bacterium BAL38]
 gi|126626118|gb|EAZ96807.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteria bacterium BAL38]
          Length = 712

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A      +         +   I  G V  +  FG FV       G
Sbjct: 608 DILKELEKPGLDPRKAAKIFEFDPNVRSIKDLKTGMILPGIVNNITAFGCFVDVGIKESG 667

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           LVHISQL    V+  ++VVK    V VK+++ D+ R +I+L+M
Sbjct: 668 LVHISQLKEGFVSDVNEVVKMHQHVQVKVVEVDEARKRIQLTM 710


>gi|157738220|ref|YP_001490904.1| S1 RNA-binding domain-containing protein [Arcobacter butzleri
           RM4018]
 gi|157700074|gb|ABV68234.1| S1 RNA binding domain protein [Arcobacter butzleri RM4018]
          Length = 702

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKLLDFD-D 679
           I  G V  + DFGAFV      D L+HISQ+S +R++  SDV+     +  +K++  D +
Sbjct: 633 ILSGIVRNITDFGAFVDIGLKNDALLHISQISEKRISHASDVLSINQNLENLKVISVDLE 692

Query: 680 RGKIKLSMK 688
           + ++ LS+K
Sbjct: 693 KQRVGLSLK 701


>gi|208434951|ref|YP_002266617.1| ribosomal protein S1 [Helicobacter pylori G27]
 gi|208432880|gb|ACI27751.1| ribosomal protein S1 [Helicobacter pylori G27]
          Length = 556

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDIVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSAKHL 446



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VCQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 41.8 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 505 EITCVVVAIEKSNNKVRASVHRLERKKEKE 534


>gi|189184094|ref|YP_001937879.1| 30S ribosomal protein S1 [Orientia tsutsugamushi str. Ikeda]
 gi|189180865|dbj|BAG40645.1| 30S ribosomal protein S1 [Orientia tsutsugamushi str. Ikeda]
          Length = 491

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 10/120 (8%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCG------ 641
           D     I  S  A +E AR  IR        V  I  G V  ++ +GAF+   G      
Sbjct: 179 DKKLGNIVVSRRAVLEEARAGIRQEVLSKIHVGMILNGVVKSIVYYGAFIELSGSDELTF 238

Query: 642 --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
               DGL+H   +   ++    + ++ G  V V ++  D   G+I L MK +  N    I
Sbjct: 239 DVKVDGLLHSINILWRKINHPGEELQIGQQVRVVVIGIDIATGQISLGMKQLSANPWDDI 298



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEG 667
               I +  ++  I  G+V  + ++GAF+      +GL H   L  E++       +  G
Sbjct: 294 PWDDIENSLQIGDIKVGKVKSIAEYGAFIEVTKDLEGLCHSGHLGWEKINQNPKKSLTIG 353

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V  K+LD D +R +I LS+K+   N  +
Sbjct: 354 QEVVFKILDIDKERHRISLSLKLCKPNPWE 383



 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 28/137 (20%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID +      S  L +          + +  +V  + +  +  + +FG FV
Sbjct: 354 QEVVFKILDIDKERHRISLSLKLCKPN----PWEVLAEKYQVGTVIRAPLRNITNFGMFV 409

Query: 638 ---------------------HFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKL 674
                                      DG++H S +       ++ +    +GD +   +
Sbjct: 410 ALSVTTNAVKYEIDGKEYEIGEMTYQIDGMIHESDILKHGDTNSNSLKNYTKGDEIECMV 469

Query: 675 LDFD-DRGKIKLSMKVV 690
           L  D ++ +I L +K +
Sbjct: 470 LAVDVEKERINLGIKQL 486


>gi|253581991|ref|ZP_04859215.1| transcriptional accessory protein [Fusobacterium varium ATCC 27725]
 gi|251836340|gb|EES64877.1| transcriptional accessory protein [Fusobacterium varium ATCC 27725]
          Length = 721

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+ FGAFV      D L+HIS++S + +   S V+  G  + V++ D D +R +
Sbjct: 654 EGTVRNVVKFGAFVDIGLKNDALLHISEISNKFIDDPSKVLSVGQIIKVRIKDVDKERER 713

Query: 683 IKLSMKVV 690
           + L+ K +
Sbjct: 714 VALTKKEI 721


>gi|56750057|ref|YP_170758.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
 gi|81300400|ref|YP_400608.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
 gi|3122813|sp|O33698|RS1_SYNE7 RecName: Full=30S ribosomal protein S1
 gi|2570205|gb|AAB82045.1| ribosomal protein S1 of 30S ribosome [Synechococcus elongatus PCC
           7942]
 gi|7328457|dbj|BAA92864.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
 gi|22002498|gb|AAM82650.1| ribosomal protein S1 [Synechococcus elongatus PCC 7942]
 gi|56685016|dbj|BAD78238.1| nucleic acid binding protein [Synechococcus elongatus PCC 6301]
 gi|81169281|gb|ABB57621.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
          Length = 295

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           ++    EV ++  G+V  +  FG FV   GA   L+ I+Q+S + VA    + K GD + 
Sbjct: 185 ALVREIEVGQLINGKVTGLKPFGVFVDLGGAT-ALLPINQISQKFVADVGAIFKIGDPIQ 243

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
             ++  D+ +G+I LS KV++ + G+
Sbjct: 244 ALVVAIDNTKGRISLSTKVLENHPGE 269


>gi|15639909|ref|NP_219359.1| tex protein (tex) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|3323244|gb|AAC65881.1| tex protein (tex) [Treponema pallidum subsp. pallidum str. Nichols]
          Length = 778

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 9/142 (6%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP----- 617
           I +++  GG V      Q  ++  + D     I +         RE              
Sbjct: 581 IFDILRAGGTVSAAQKAQVQSQCAVSDRTVEDIITELQKPNRDPREDYPKPVLRQGLISF 640

Query: 618 ---EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +V    +G+V  V+DFGAFV        L+H+SQ+S   V+     VK GD     +
Sbjct: 641 ADLKVGATVQGKVKNVVDFGAFVDIGIKETALLHVSQMSDHFVSNPLKKVKVGDVYTCTI 700

Query: 675 LDFDD-RGKIKLSMKVVDQNTG 695
           +  D+ R +I LS++   +   
Sbjct: 701 IGLDEARRRISLSLRQEQRAPA 722


>gi|238882910|gb|EEQ46548.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           albicans WO-1]
          Length = 996

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 7/87 (8%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKL 674
           P+V KIY G V  V ++GAF+   G   GL HISQ+S +  RV   ++V+     V+VK+
Sbjct: 73  PQVGKIYSGVVQSVTNYGAFIKIEG-TSGLCHISQMSFDGSRVES-TNVLAPNQKVFVKV 130

Query: 675 LDFDDR-GKIKLSMKVVDQNTG--KPI 698
           ++      +I LSM+ ++QNTG  +PI
Sbjct: 131 INIQTHANRISLSMRGINQNTGHEEPI 157


>gi|317012828|gb|ADU83436.1| 30S ribosomal protein S1 [Helicobacter pylori Lithuania75]
          Length = 556

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDIVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSAKHL 446



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 505 EITCVVVAIEKSNNKVRASVHRLERKKEKE 534


>gi|15612047|ref|NP_223699.1| 30S ribosomal protein S1 [Helicobacter pylori J99]
 gi|12230557|sp|Q9ZKF6|RS1_HELPJ RecName: Full=30S ribosomal protein S1
 gi|4155561|gb|AAD06555.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
          Length = 552

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 247 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDIVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDKKISLSAKHL 442



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      EI           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V ++  FG FV F    DGLVH S++S +         KEGD V+VK + +D+ + ++ L
Sbjct: 207 VRQITPFGIFVKF-KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F+H     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIH-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|317011250|gb|ADU84997.1| 30S ribosomal protein S1 [Helicobacter pylori SouthAfrica7]
          Length = 553

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      EI           ++ E  +   G 
Sbjct: 157 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISK---------ELLEATEPVLGV 207

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 208 VRQITPFGIFVEV-KGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSL 266

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 267 SIKATIEDPWEEI 279



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +R   E     ++ID        S                    +V  + +G+V  + DF
Sbjct: 331 LRVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFETKYQVGDVIEGKVATLTDF 386

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           GAF++  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +  
Sbjct: 387 GAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDAIKVKILKINKKDKKISLSAKHLVA 445

Query: 693 NTGKP 697
           +  + 
Sbjct: 446 SPTEE 450



 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +++ + +G+VV + DFG F+H     D L+    L+  +     D +K G 
Sbjct: 447 PTEEFAQKHKIDSVIQGKVVSIKDFGVFIH-ADGIDVLIKNEDLNPLK----KDEIKMGQ 501

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 502 EITCVVVAIEKSNNKVRASVHRLERKKEKE 531


>gi|297704868|ref|XP_002829311.1| PREDICTED: exosome complex exonuclease RRP46-like [Pongo abelii]
          Length = 232

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 336 HGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS 395
              +    GDT  +  V  G  E +          +  F    N          ++G P 
Sbjct: 39  EAPTAVSSGDTSVLAGV-YGPAEVK--------VSKEIF----NKATLEVILRPKIGLPG 85

Query: 396 RREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
             E    RL R     V+  T     ++ +V ++    GS     +  + +AL+DAGVP+
Sbjct: 86  VAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPM 145

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
                G+   L  DG    ++ D +  ++         A
Sbjct: 146 RALFCGVTCALDSDG---TLMLDPTSKQEKEARAVLTFA 181



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 33  ATYGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRPTENEI 89
            + G+T VLA V     +K  ++ F    L V  + +                 P   E 
Sbjct: 44  VSSGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLPGVAEK 89

Query: 90  LISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPV 149
              R+I  +   +        T + + +       S     + AA  AL+ +G+P     
Sbjct: 90  SRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALF 149

Query: 150 VGAQVDY-INGQYVLNPRLDEDQ 171
            G       +G  +L+P   +++
Sbjct: 150 CGVTCALDSDGTLMLDPTSKQEK 172


>gi|184152929|ref|YP_001841270.1| transcription accessory protein [Lactobacillus reuteri JCM 1112]
 gi|227363522|ref|ZP_03847642.1| S1 domain RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|325681871|ref|ZP_08161389.1| YhgF like protein [Lactobacillus reuteri MM4-1A]
 gi|183224273|dbj|BAG24790.1| transcription accessory protein [Lactobacillus reuteri JCM 1112]
 gi|227071459|gb|EEI09762.1| S1 domain RNA-binding protein [Lactobacillus reuteri MM2-3]
 gi|324978515|gb|EGC15464.1| YhgF like protein [Lactobacillus reuteri MM4-1A]
          Length = 727

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I      NV  +G       +++   K   DD    +  +  ++ ++     +R     
Sbjct: 575 KIIQAAGINVDELGTPSADDKLKKIDVKQFTDDQVGTETVTDIISSLQKPGRDLRDSMPA 634

Query: 617 P------------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           P            +     +G V  V+DFGAFV      DGLVH+S++S + +     +V
Sbjct: 635 PLLRHDVMTIEDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIRDPRAMV 694

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSM 687
             GD V V + D D  R +I+L+M
Sbjct: 695 AVGDIVDVWIDDVDLKRQRIQLTM 718


>gi|148543523|ref|YP_001270893.1| RNA-binding S1 domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|148530557|gb|ABQ82556.1| RNA binding S1 domain protein [Lactobacillus reuteri DSM 20016]
          Length = 726

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I      NV  +G       +++   K   DD    +  +  ++ ++     +R     
Sbjct: 574 KIIQAAGINVDELGTPSADDKLKKIDVKQFTDDQVGTETVTDIISSLQKPGRDLRDSMPA 633

Query: 617 P------------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           P            +     +G V  V+DFGAFV      DGLVH+S++S + +     +V
Sbjct: 634 PLLRHDVMTIEDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKMSKQFIRDPRAMV 693

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSM 687
             GD V V + D D  R +I+L+M
Sbjct: 694 AVGDIVDVWIDDVDLKRQRIQLTM 717


>gi|322412402|gb|EFY03310.1| hypothetical protein SDD27957_08525 [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 119

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G +  +  +GAFV       GL+HIS++ T  +   + ++  GD V V+++D
Sbjct: 1   MKIGDKLHGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNINQLLAIGDKVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+   K  LS++ ++++
Sbjct: 61  VDEFTHKASLSLRTLEED 78


>gi|154359354|gb|ABS79699.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359356|gb|ABS79700.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 186

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 110 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 168

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 169 RDRGRVSLSTKKLEPTPG 186


>gi|224539247|ref|ZP_03679786.1| hypothetical protein BACCELL_04149 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519129|gb|EEF88234.1| hypothetical protein BACCELL_04149 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 519

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 14/156 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M+K L  S  +L     +   + I P++      +G   ++ I+++   K   D  
Sbjct: 370 IVEQMAKDLGCSVAEL--IASKELRLKIKPEKYLTPT-VGMPTLKDILQEL-EKPGRDPR 425

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +K        I    + +R+I D+ E  ++  G V  + +FGAFV      +GL+H+S
Sbjct: 426 GPIK--------IFEFDKNVRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLIHLS 476

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           QL+   V+  +++V     V VK+L  D DR +I L
Sbjct: 477 QLADRFVSDPNEIVSIHQHVRVKVLSVDMDRKRIAL 512


>gi|327470660|gb|EGF16116.1| S1 RNA binding domain protein [Streptococcus sanguinis SK330]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|317009664|gb|ADU80244.1| 30S ribosomal protein S1 [Helicobacter pylori India7]
          Length = 556

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDAEKRRFSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S          + 
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTN----KP 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSAKHL 446



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ +  L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRFSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 41.8 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 505 EITCVVVAIEKSSNKVRASVHRLERKKEKE 534


>gi|296109361|ref|YP_003616310.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           infernus ME]
 gi|295434175|gb|ADG13346.1| translation initiation factor 2, alpha subunit [Methanocaldococcus
           infernus ME]
          Length = 262

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V +V  +GAFV       ++GL+HIS++++  V    D VK G  V  K+
Sbjct: 6   PEEGDIVIGTVKEVKPYGAFVELLEYPGKEGLIHISEVTSGWVRNIRDHVKVGQRVVAKV 65

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPIV 699
           L  + ++G I LS+K V     +  V
Sbjct: 66  LRVNKEKGHIDLSLKRVSDQQRREKV 91


>gi|332367155|gb|EGJ44891.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|332362463|gb|EGJ40263.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1056]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|58584320|ref|YP_197893.1| 30S ribosomal protein S1 [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58418636|gb|AAW70651.1| Ribosomal protein S1 [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 550

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             + +    +V+ I+KG +  + D+G FV      +GLVH S+++  +     + +V  G
Sbjct: 299 PWQDVESKYQVDSIHKGHITSIEDYGLFVELKPGIEGLVHSSEITWVKSNLPVNSLVTRG 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V VK+L+ D  + ++ LSMK    N  +
Sbjct: 359 QEVSVKILNVDITKNRMSLSMKRCVDNPWQ 388



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 12/148 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   Q+++   +     + IV +   K      G + ++   + E   A E  + +  +
Sbjct: 162 HVDLKQVKDARHLIETEQKFIVLKMDKK-----QGNIVVSRKLVLEKLHAGEKTKFLEFL 216

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC-----GARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            E   I +G++  +  +G FV        G  DGL+HI+ +S  RV+  S     G  + 
Sbjct: 217 NEG-DIIEGKIKSITHYGVFVGIHESDAVGVIDGLLHITDISWSRVSHPSAAFACGQIIK 275

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           VK++  D +  K+ L +K ++ N  + +
Sbjct: 276 VKIIKIDKENAKVSLGIKQLEDNPWQDV 303


>gi|317180145|dbj|BAJ57931.1| 30S ribosomal protein S1 [Helicobacter pylori F32]
          Length = 552

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  I +G+V  + DFGAF+
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDIFESKHQVGDIVEGKVATLTDFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHL 442



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +++ + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKIDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|254417151|ref|ZP_05030897.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176129|gb|EDX71147.1| S1 RNA binding domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 299

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    K+  S      AA         + EV ++ +G V  +  FG FV   G   GL+H
Sbjct: 174 DRDRSKLVFSQREATRAA------SFSMLEVGQLVEGTVSNIRPFGVFVELEG-ITGLLH 226

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           I Q+S   V   +D+ + G ++   ++D D+   ++ LS KV++   G+
Sbjct: 227 IKQVSQNMVESLTDMFEVGQSIKAIVIDLDEGTNRVSLSTKVLENYPGE 275


>gi|325696116|gb|EGD38007.1| S1 RNA binding domain protein [Streptococcus sanguinis SK160]
 gi|328946764|gb|EGG40902.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1087]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|225857163|ref|YP_002738674.1| hypothetical protein SPP_1560 [Streptococcus pneumoniae P1031]
 gi|225724940|gb|ACO20792.1| S1-type RNA-binding domain protein [Streptococcus pneumoniae P1031]
          Length = 128

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V++L
Sbjct: 9   KMKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVL 68

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           D D+  GK  LS++ +++ 
Sbjct: 69  DLDEFTGKASLSIRTLEEE 87


>gi|125718359|ref|YP_001035492.1| transcriptional accessory ribonuclease (YqgFc, S1) [Streptococcus
           sanguinis SK36]
 gi|125498276|gb|ABN44942.1| Transcriptional accessory ribonuclease (YqgFc, S1), putative
           [Streptococcus sanguinis SK36]
 gi|324991505|gb|EGC23438.1| S1 RNA binding domain protein [Streptococcus sanguinis SK353]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|325687255|gb|EGD29277.1| S1 RNA binding domain protein [Streptococcus sanguinis SK72]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
 gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
          Length = 283

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 98/271 (36%), Gaps = 39/271 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  K     +L++  R DGR     R +S  +G  ++  GS+L   GDT  +  V +   
Sbjct: 13  LIKKESIISLLERGSRNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKI--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
           EDE Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 71  EDEPYSDT---PNQGNLVVNAELLPLAY-ETFEPGPPDENAIELSRVVDRSLRDSKAVDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    +  AL D  +                
Sbjct: 127 SALVIEPGKRVWTVWVDISVLDYGGNILDACTLSAVAALYDTKLPRIVNDNGTINIVKED 186

Query: 454 -----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                PI  PVA + +  +       ++ D   +E+ +       +    G         
Sbjct: 187 KTTPFPIRYPVATVTIAKLGK----FLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQKSG 242

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            G  S+  + +A   ++     +L +   ++
Sbjct: 243 EGSFSQQEIEIAENTSRTVSQKMLEDFKNIM 273



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 42/190 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK--DGQDFFPLTVNYQERTYAVG 71
           RPL +  G  A+++DG+ L   G+T VLA V  +      D  +   L VN +    A  
Sbjct: 38  RPLSITLG-YAKKADGSALVKLGDTTVLAGVKIEEDEPYSDTPNQGNLVVNAELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---------LFSKCYK-NETQVIINVMQHD 121
               G       P EN I +SR++DRS+R          +     +     V I+V+ + 
Sbjct: 97  TFEPGP------PDENAIELSRVVDRSLRDSKAVDLSALVIEPGKRVWTVWVDISVLDY- 149

Query: 122 LESSPHVVSMVAASAALMLSGL---------------------PFEGPVVGAQVDYINGQ 160
             +       ++A AAL  + L                     P   PV    +  +   
Sbjct: 150 GGNILD-ACTLSAVAALYDTKLPRIVNDNGTINIVKEDKTTPFPIRYPVATVTIAKLGKF 208

Query: 161 YVLNPRLDED 170
            V++P L+E+
Sbjct: 209 LVVDPDLEEE 218


>gi|327490297|gb|EGF22085.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1058]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|324994814|gb|EGC26727.1| S1 RNA binding domain protein [Streptococcus sanguinis SK678]
 gi|327461023|gb|EGF07356.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1057]
 gi|327463129|gb|EGF09450.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1]
          Length = 710

 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|329573328|gb|EGG54941.1| S1 RNA binding domain protein [Enterococcus faecalis TX1467]
          Length = 128

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M R      ++  +  G +  +  +GAFV       GL+H+S++          ++  G 
Sbjct: 1   MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIYGLLTVGQ 60

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVD 691
            V V+++D D+   KI LS++ ++
Sbjct: 61  KVTVQVIDVDEYSQKISLSLRTLE 84


>gi|209548145|ref|YP_002280062.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533901|gb|ACI53836.1| RNA binding S1 domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 769

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           + I E+ G     +I  +          +   AA     +     +   + +G V  V  
Sbjct: 603 QFIDEKFGLPTVRDIISELEKPGRDPRPSFKTAAFAEGVNEISDLKPGMMLEGTVTNVAA 662

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R +I LSMK  D
Sbjct: 663 FGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKRDD 722

Query: 692 QNTGKP 697
            +   P
Sbjct: 723 GSAAPP 728


>gi|332673856|gb|AEE70673.1| 30S ribosomal protein S1 [Helicobacter pylori 83]
          Length = 552

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I        IG
Sbjct: 247 DEVHVKAIAYDEEKRRLSLS-IKATIKDPWEEIQDKLKPGYAIKVVVSNIEKYGVFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDILEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDKKISLSAKHL 442



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVEV-KGVEGLVHYSEISHKGPVNPEKYYKEGDEVHVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIKDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|271965051|ref|YP_003339247.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
 gi|270508226|gb|ACZ86504.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
          Length = 294

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +       V +I  G V KV+ FGAFV      +GLVH+S+L+   VA   D V+ G
Sbjct: 191 DPFQQFARGVHVGQILYGPVTKVVPFGAFVRVADDAEGLVHLSELTALPVAAALDAVQIG 250

Query: 668 DTVWVKLLDFDD-RGKIKLS-----MKVVDQNTGKP 697
           D V V +++ D  R ++ LS     MK  D    KP
Sbjct: 251 DEVTVIVIEIDPLRRRLALSRCQAAMKTWDLPPTKP 286



 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARD-------GLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +   G V  +  FG FV      D       G + + +LS  R    S+VV  G+ +  +
Sbjct: 111 QRLSGTVAAIERFGVFVDLDDGPDHPVFPGVGFITMPELSWRRFEDPSEVVSVGERISCE 170

Query: 674 LLDFDDR-GKIKLSMKVVDQNT 694
           +L FD   G+ ++S++    + 
Sbjct: 171 VLTFDTHNGEARVSLRATQPDP 192


>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
 gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
          Length = 217

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 19/228 (8%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           +++R +  ++ +L R+ GS++  +G+T     V  G  E +     L         +  +
Sbjct: 8   DSLRPMFCELNILTRSDGSAMLTQGETAVTASVN-GPVEVK-----LQHMNVEKSYVEIH 61

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           F P +      MG+ + R +    L R      L         + I  +  +  G     
Sbjct: 62  FRPRSG-----MGSVNDRLLE--NLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVAC 114

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            +    LAL+D+G+ +   VA +   L ++G        +  DE        +       
Sbjct: 115 AINAVCLALIDSGIEMKYLVAAVHSVLDEEGG-----ITLDPDELRAKDARARFTFVFEN 169

Query: 500 ITAMQMDMKIGG-ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            +   + +   G  +      AL+ +      + +    ++++ +  L
Sbjct: 170 TSRNTVSIYTHGKFTSEQYHRALRMSTDAVGRVFDFYRTIVAKQQNVL 217



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 17/215 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+  E   + R SDG+ + T GET V A+V     +K             E++Y    +
Sbjct: 11  RPMFCELNILTR-SDGSAMLTQGETAVTASVNGPVEVKLQHMNV-------EKSY----V 58

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
              +  R    + N+ L+  +I  +            T V I + +          ++ A
Sbjct: 59  EIHFRPRSGMGSVNDRLLENLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVACAINA 118

Query: 134 ASAALMLSGLPFEGPVVGA-QVDYINGQYVLNP---RLDEDQGSLDLFVSGTQDAVLMVE 189
              AL+ SG+  +  V     V    G   L+P   R  + +         T    + + 
Sbjct: 119 VCLALIDSGIEMKYLVAAVHSVLDEEGGITLDPDELRAKDARARFTFVFENTSRNTVSIY 178

Query: 190 LEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKM 224
                 SE     A+    +    V +    +   
Sbjct: 179 THGKFTSEQY-HRALRMSTDAVGRVFDFYRTIVAK 212


>gi|325694859|gb|EGD36764.1| S1 RNA binding domain protein [Streptococcus sanguinis SK150]
          Length = 710

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|308184793|ref|YP_003928926.1| 30S ribosomal protein S1 [Helicobacter pylori SJM180]
 gi|308060713|gb|ADO02609.1| 30S ribosomal protein S1 [Helicobacter pylori SJM180]
          Length = 556

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      EI           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISK---------ELLEAKEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDIIEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSAKHL 446



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 505 EITCVVVAIEKSNNKVRASVHRLERKKEKE 534


>gi|257463950|ref|ZP_05628335.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium sp. D12]
 gi|317061474|ref|ZP_07925959.1| LytB protein [Fusobacterium sp. D12]
 gi|313687150|gb|EFS23985.1| LytB protein [Fusobacterium sp. D12]
          Length = 545

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 7/126 (5%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           G+ I  IV+     +  D+        +   +     +       +  V  +    V  +
Sbjct: 153 GENIDVIVKD----IKQDNRDKRSKKITFSKKDITLMKEEEEFAKLT-VGDVVTCTVSGI 207

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
           MDFG  V       G +HIS++S +R+    D+   G TV  K+L  D+  K IKLS+K 
Sbjct: 208 MDFGLSVMI-NHLRGFIHISEVSWKRLDDLKDLYSVGQTVEAKILSLDEEKKNIKLSIKQ 266

Query: 690 VDQNTG 695
           + +N  
Sbjct: 267 LTENPW 272



 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +  +V    + ++  +MDFG FV      DG +    +S + V    D  + 
Sbjct: 440 KSPWDKAMEEYKVGTTVEKKIKNIMDFGLFVELTKGIDGFIPTQFVSKDFVKDLKDKFEI 499

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V  ++++ + +  KIKLS+K ++
Sbjct: 500 GQIVKAQIVEINQETQKIKLSIKKIE 525



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDR- 680
            +G+V +V+ +GAFV      +GLVHIS  +  ++     +  K G+TV VK+L+F+   
Sbjct: 285 VEGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEA 344

Query: 681 GKIKLSMKVVDQNTG 695
            K+KL  K + +N  
Sbjct: 345 RKLKLGFKQLVENPW 359



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +  FG F       D  VH S        +     + GD++  K+L+ + +  KIK S+K
Sbjct: 379 IKPFGLFAEIESGVDVFVHSSDFGW--PGEEPANYQIGDSISFKVLELNVEDKKIKGSIK 436

Query: 689 VVDQNTG 695
            + ++  
Sbjct: 437 ALKKSPW 443


>gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857753|dbj|BAD41911.1| ribosomal protein S1-like RNA-binding domain [Symbiobacterium
           thermophilum IAM 14863]
          Length = 764

 Score = 73.0 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            + P+Q+   +G G   +R I+E              K       E+       R+    
Sbjct: 598 KLSPEQVAAELGAGVPTVRDIIEALS-----------KPGRDPRDELPQPI--FRTDVLK 644

Query: 617 PEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            E  ++     G V  V+DFGAFV      DGLVH+SQLS + V   S+VV+ GD V VK
Sbjct: 645 LEDLQVGMELMGTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHPSEVVQVGDVVRVK 704

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGK 696
           +++ D  R +I LSMK+ D    +
Sbjct: 705 VIEVDLKRQRIGLSMKLGDPPAAE 728


>gi|332358670|gb|EGJ36493.1| S1 RNA binding domain protein [Streptococcus sanguinis SK355]
          Length = 710

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|317014439|gb|ADU81875.1| 30S ribosomal protein S1 [Helicobacter pylori Gambia94/24]
          Length = 552

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 247 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  I +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDIVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDKKISLSAKHL 442



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F+H     D L+    LS  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIH-ADGIDVLIKNEDLSPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|146319266|ref|YP_001198978.1| transcriptional accessory protein [Streptococcus suis 05ZYH33]
 gi|146321470|ref|YP_001201181.1| transcriptional accessory protein [Streptococcus suis 98HAH33]
 gi|145690072|gb|ABP90578.1| Transcriptional accessory protein [Streptococcus suis 05ZYH33]
 gi|145692276|gb|ABP92781.1| Transcriptional accessory protein [Streptococcus suis 98HAH33]
 gi|292558899|gb|ADE31900.1| RNA binding S1 [Streptococcus suis GZ1]
 gi|319758700|gb|ADV70642.1| transcriptional accessory protein [Streptococcus suis JS14]
          Length = 332

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVK 629
           +  T  K+ +  +    I +  L      R+   +     +V  +         +G V  
Sbjct: 198 IADTAEKIGVGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLDVKDLVVGQELQGTVRN 257

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVA---------KTSDVVKEGDTVWVKLLDFD-D 679
           ++DFGAFV      DGLVHIS++   +             S+V+  G+ V V +++ D  
Sbjct: 258 IVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQALPHPSEVLAVGEIVTVWVVEVDIK 317

Query: 680 RGKIKLSM 687
           R +I LS+
Sbjct: 318 RNRIGLSL 325


>gi|315636507|ref|ZP_07891743.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
 gi|315479156|gb|EFU69853.1| S1 RNA binding domain protein [Arcobacter butzleri JV22]
          Length = 701

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKLLDFD-D 679
           +  G V  + DFGAFV      D L+HISQ+S +R++  SDV+     +  +K++  D +
Sbjct: 633 VLSGIVRNITDFGAFVDIGLKNDALLHISQISEKRISHASDVLSINQNLENLKVISVDLE 692

Query: 680 RGKIKLSMK 688
           + ++ LS+K
Sbjct: 693 KQRVGLSLK 701


>gi|327474740|gb|EGF20145.1| S1 RNA binding domain protein [Streptococcus sanguinis SK408]
          Length = 710

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|254168683|ref|ZP_04875525.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|254168845|ref|ZP_04875686.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|289596827|ref|YP_003483523.1| translation initiation factor 2, alpha subunit [Aciduliprofundum
           boonei T469]
 gi|197622282|gb|EDY34856.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|197622309|gb|EDY34882.1| Eukaryotic translation initiation factor 2 alpha subunit family
           [Aciduliprofundum boonei T469]
 gi|289534614|gb|ADD08961.1| translation initiation factor 2, alpha subunit [Aciduliprofundum
           boonei T469]
          Length = 254

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  +     V  V  +GAFV       ++G +HIS+++T  +    D V+EG  V  K+
Sbjct: 6   PETGEFVIATVKTVKPYGAFVTLDEYEGKEGFIHISEIATGWIKYIRDHVREGQKVVCKV 65

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L  D  RG I LS+K V+++  + 
Sbjct: 66  LRVDPSRGHIDLSLKRVNEHQRRD 89


>gi|332358941|gb|EGJ36762.1| S1 RNA binding domain protein [Streptococcus sanguinis SK49]
          Length = 710

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +  +G V  V+DFGAFV      DGL+HIS+LST+ +   S V+  GD V V +   D
Sbjct: 634 IGQKLEGVVRNVVDFGAFVDIGIHEDGLIHISKLSTDYIKHPSQVLSVGDLVTVWVDKLD 693

Query: 679 -DRGKIKLSMKVVDQN 693
            +R K+ LS+   +++
Sbjct: 694 VEREKVNLSLIAPNES 709


>gi|169350338|ref|ZP_02867276.1| hypothetical protein CLOSPI_01099 [Clostridium spiroforme DSM 1552]
 gi|169293121|gb|EDS75254.1| hypothetical protein CLOSPI_01099 [Clostridium spiroforme DSM 1552]
          Length = 125

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +        I   ++  +  +GAF        GL+HIS++S + V      VK G+ + V
Sbjct: 1   MVPKVNRGDIVDVKITGIQPYGAFASLPDNSTGLIHISEISDKFVKSIDSFVKVGEFIKV 60

Query: 673 KLLDFDDRGKI-KLSMKVVD 691
           K++DFD+     KLS+K +D
Sbjct: 61  KVIDFDEETNHAKLSLKAID 80


>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
 gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
          Length = 270

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 103/273 (37%), Gaps = 34/273 (12%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ A +++  +++   +K R+DGR  E +R +  +V ++++  GS+    G+TQ +V + 
Sbjct: 2   EVMASIMKDHIVELLKEKKRIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIK 61

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA----- 408
           L   E    +        N  ++               G P  R I   R+  R      
Sbjct: 62  LDLGEPFPDLPDKGVMTTNVELVPLASPTFE------PGPPDERAIELARVVDRGIRESQ 115

Query: 409 ---IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK-------- 457
              +  ++    +    + I   + + DG+   AT  G+  AL+   +P  +        
Sbjct: 116 AIDLEKLVIIPGKLVRVVFIDVHVLDHDGNLVDATGIGAIAALLSTKMPKIEYNEETGEV 175

Query: 458 ---------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                    PV  I + +        I+ D + +E+H+      +   ++G  +     +
Sbjct: 176 MMLDEYEPLPVTKIPIPVSFAKIGGTIVVDPNLEEEHVMDGKLTITTDENGYISAVQKSE 235

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            G      ++ A+  A +    I  ++ + + +
Sbjct: 236 GGSFKLEEVMYAVDVAFKKAQEIREKILEAVGK 268



 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 86/244 (35%), Gaps = 43/244 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLKDGQ-DFFPLTVNYQERTYAVG 71
           RPL+++   I + ++G+     G T VL  +  D         D   +T N +    A  
Sbjct: 31  RPLEVKVNVIEK-AEGSAWVKLGNTQVLVGIKLDLGEPFPDLPDKGVMTTNVELVPLASP 89

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
               G       P E  I ++R++DR IR           +          + ++V+ HD
Sbjct: 90  TFEPGP------PDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVFIDVHVLDHD 143

Query: 122 LE-SSPHVVSMVAASAALMLSGLPFEGPVVGAQV------------------DYINGQYV 162
                   +  +AA  +  +  + +        +                    I G  V
Sbjct: 144 GNLVDATGIGAIAALLSTKMPKIEYNEETGEVMMLDEYEPLPVTKIPIPVSFAKIGGTIV 203

Query: 163 LNPRLDEDQGSLD--LFVSGTQDA-VLMVE-LEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++P L+E+   +D  L ++  ++  +  V+  E      + V+ A+     + + + E I
Sbjct: 204 VDPNLEEEHV-MDGKLTITTDENGYISAVQKSEGGSFKLEEVMYAVDVAFKKAQEIREKI 262

Query: 219 SKLA 222
            +  
Sbjct: 263 LEAV 266


>gi|123232500|emb|CAM19184.1| zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|123858148|emb|CAM25095.1| zinc finger, CCHC domain containing 17 [Mus musculus]
          Length = 186

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 3/57 (5%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 2   GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 58


>gi|307267235|ref|ZP_07548738.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917730|gb|EFN48001.1| RNA binding S1 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 283

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 11/171 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +S   +  A +  +     I+  +   +    L    F P  ++     D++   +G   
Sbjct: 93  LSREKIEKAYKNKEIIEGEIIEVVKGGVIAYSLGAKVFIPASQLELHYVDKLNEYLGKTL 152

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + +R I    G K+       +K+            ++ +++    +   I +G+V  ++
Sbjct: 153 R-LRIIEYIPGKKIVGSQKEVLKL---------EREKVKKALLSNLKEGDIVEGKVKNII 202

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           D G FV   G  DG + +S++S ER+    +V+  GD V V +L+ D++ K
Sbjct: 203 DKGVFVDIGGF-DGFIPLSEISWERIKNPREVLGIGDKVSVYILNVDEKKK 252


>gi|210135214|ref|YP_002301653.1| 30S ribosomal protein S1 [Helicobacter pylori P12]
 gi|210133182|gb|ACJ08173.1| 30S ribosomal protein S1 [Helicobacter pylori P12]
          Length = 556

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSAKHL 446



 Score = 41.8 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  ++    K 
Sbjct: 505 EITCVVVAIEKSNNKVRASVHRLEHKKEKE 534


>gi|254303539|ref|ZP_04970897.1| bifunctional penicillin tolerance protein LytB/ribosomal protein S1
           RpsA [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323731|gb|EDK88981.1| bifunctional penicillin tolerance protein LytB/ribosomal protein S1
           RpsA [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 827

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + GK I+ IV+    KV+  D    KI  S      A +E   +      + +     V 
Sbjct: 431 VNGKKIQVIVK--DIKVDAKDKKNKKITYSVKDIKTAEQEKEFAG---LTIGQTVDCVVT 485

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +V+DFG  V     + G +HIS++S +R+ K SDV K GD +   ++  D+  + +KLS+
Sbjct: 486 EVLDFGLAVDINALK-GFIHISEVSWKRLDKLSDVYKVGDHIKAVVVSLDEAKRNVKLSI 544

Query: 688 KVVDQNTG 695
           K ++++  
Sbjct: 545 KKLEEDPW 552



 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 13/138 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D++ +V  +G  +   +V    AK N      VK++   L E   A     ++ +  +V+
Sbjct: 514 DKLSDVYKVGDHIKAVVVSLDEAKRN------VKLSIKKLEEDPWA-----TVANEFKVD 562

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLLDFD- 678
              +G V KV+ +GAFV      +GLVHIS  S  +     ++ VKEG+ V V++ D   
Sbjct: 563 DEVEGTVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKEGEKVKVRITDLHP 622

Query: 679 DRGKIKLSMKVVDQNTGK 696
           +  K+KL +K +  N  +
Sbjct: 623 EDRKLKLGIKQLVANPWE 640



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDKKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D   EGD V  ++++ + D  KIKLS
Sbjct: 749 FIELTKGIDGFIPTQFASKEFIKNIRDKFNEGDVVKAQVVEVNKDTQKIKLS 800



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      V  I KG+VV+V  FG FV      D  VH S  S           + G+
Sbjct: 638 PWETAEKDFAVGTIIKGKVVEVKPFGIFVEIADGIDAFVHSSDYSWVGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDKKIKGSLKALRKSPWE 724


>gi|108563418|ref|YP_627734.1| 30S ribosomal protein S1 [Helicobacter pylori HPAG1]
 gi|107837191|gb|ABF85060.1| ribosomal protein S1 [Helicobacter pylori HPAG1]
          Length = 556

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVMVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSAKHL 446



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      EI           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VCQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 41.8 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 505 EITCVVVAIEKSNNKVRASVHRLERKKEKE 534


>gi|300176535|emb|CBK24200.2| unnamed protein product [Blastocystis hominis]
          Length = 600

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 6/188 (3%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +    G+++   GS+    G+ + +  V  G R+  + VDS     +      + + P A
Sbjct: 5   LLISTGVVKNASGSAYVELGNMKIMCSVQ-GPRDSFRSVDS---QDKGALYCDFKYAPFA 60

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
             +V +    +R       L  + +   +   A     + +   + E DG     ++  +
Sbjct: 61  QKDVYQPNLLNRETKSMSLLLEKILSTSVDLEAFPKAVVELYIMVLEVDGDPLGLSLMCA 120

Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG-TDSGITAM 503
           SLAL DAG+ +   + G     V + +  I+       E    +    +   T  G+   
Sbjct: 121 SLALTDAGLNLFGLL-GCCCVSVMENNQMIVNPTSDELEKAKCYTQLAILNSTKVGVDGG 179

Query: 504 QMDMKIGG 511
              + +GG
Sbjct: 180 VDFLLLGG 187



 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 12/165 (7%)

Query: 13  GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS---LKDGQDFFPLTVNYQERTYA 69
            + L + TG + + + G+     G   ++ +V   R      D QD   L  +++   +A
Sbjct: 2   DKQLLISTGVV-KNASGSAYVELGNMKIMCSVQGPRDSFRSVDSQDKGALYCDFKYAPFA 60

Query: 70  VGK-IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHV 128
                    L RE++     +L+ +++  S+        K   ++ I V++ D    P  
Sbjct: 61  QKDVYQPNLLNRETK--SMSLLLEKILSTSVD--LEAFPKAVVELYIMVLEVDG--DPLG 114

Query: 129 VSMVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQG 172
           +S++ AS AL  +GL   G +    V    N Q ++NP  DE + 
Sbjct: 115 LSLMCASLALTDAGLNLFGLLGCCCVSVMENNQMIVNPTSDELEK 159


>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
          Length = 265

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT---REDEQYVDSLSGT 369
           R+DGR    +R + AQ+     + GSS    G+T  I +V  G    R  E    +  G 
Sbjct: 15  RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVH-GPAEGRRSEATGPAREGA 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLR 424
             +  +    F   +  +  +     G   R+       A R A  P L        T+ 
Sbjct: 74  VVSVAVNVAGF---SGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTIS 130

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 131 LHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 10/138 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE----- 81
           S G+   + G TVV+  V      +  +   P                 G  R++     
Sbjct: 37  SSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATG 96

Query: 82  -SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                +    ++  +  + +P         +   + ++V+  D   S     + A + AL
Sbjct: 97  GGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDG--SLFAACINACTLAL 154

Query: 139 MLSGLPFEGPVVGAQVDY 156
           + +G+P  G +    V  
Sbjct: 155 VDAGIPMPGLLCACTVGM 172


>gi|116250726|ref|YP_766564.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255374|emb|CAK06449.1| putative RNA-binding domain transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 769

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVK 629
             +  ID+   +      +AE+E      R            +     +   + +G V  
Sbjct: 600 DPRQFIDEKFGLPTVRDIIAELEKPGRDPRPSFKTATFAEGVNEISDLKPGMVLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R +I LSM+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMR 719

Query: 689 VVDQNTGKP 697
             D ++  P
Sbjct: 720 RDDGSSAPP 728


>gi|307272692|ref|ZP_07553940.1| putative general stress protein 13 [Enterococcus faecalis TX0855]
 gi|306510687|gb|EFM79709.1| putative general stress protein 13 [Enterococcus faecalis TX0855]
          Length = 128

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M R      ++  +  G +  +  +GAFV       GL+H+S++          ++  G 
Sbjct: 1   MKRGNLMKYKIGMVLSGIITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQ 60

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVD 691
            V V+++D D+   KI LS++ ++
Sbjct: 61  KVTVQVIDVDEYSQKISLSLRTLE 84


>gi|86604252|gb|ABD13904.1| transcriptional accessory protein [Lactobacillus reuteri]
          Length = 725

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP------- 617
           NV  +G       +++   K   DD    +  +  ++ ++     +R     P       
Sbjct: 581 NVDELGTPSADDKLKKIDVKQFTDDQVGTEPVTDIISSLQKPGRHLRDSMPAPLLRHDVM 640

Query: 618 -----EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +     +G V  V+DFG FV      DGLVH+S++S + +     +V  GD V V
Sbjct: 641 TIEDLKPGMKLQGTVRNVVDFGVFVDIGVKHDGLVHVSKMSKQFIRDPRAMVAVGDIVDV 700

Query: 673 KLLDFD-DRGKIKLSM 687
            + D D  R +I+L+M
Sbjct: 701 WIDDVDLKRQRIQLTM 716


>gi|254555635|ref|YP_003062052.1| transcription accessory protein [Lactobacillus plantarum JDM1]
 gi|254044562|gb|ACT61355.1| transcription accessory protein [Lactobacillus plantarum JDM1]
          Length = 723

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V+DFGAFV     +DGLVH+S+L+ + +      V  GD V V + + 
Sbjct: 647 KPGMQLQGTVRNVVDFGAFVDIGVKQDGLVHVSKLTDKFLKDPRQAVAVGDIVTVWVEEV 706

Query: 678 DD-RGKIKLSM 687
           D+ R +I L+M
Sbjct: 707 DEQRQRIALTM 717


>gi|150026513|ref|YP_001297339.1| RNA-binding protein [Flavobacterium psychrophilum JIP02/86]
 gi|149773054|emb|CAL44538.1| Putative RNA binding protein with S1 RNA-binding domain
           [Flavobacterium psychrophilum JIP02/86]
          Length = 718

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G V  + +FG FV       GLVHISQL    V+  ++VVK    V VK+ + D D
Sbjct: 649 MILPGIVNNITNFGCFVDIGTKESGLVHISQLKAGFVSDVNEVVKLHQHVTVKVTEVDED 708

Query: 680 RGKIKLSM 687
           R +I+L+M
Sbjct: 709 RKRIQLTM 716


>gi|28377451|ref|NP_784343.1| transcription accessory protein [Lactobacillus plantarum WCFS1]
 gi|300768796|ref|ZP_07078691.1| YhgF like protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|28270283|emb|CAD63184.1| transcription accessory protein [Lactobacillus plantarum WCFS1]
 gi|300493623|gb|EFK28796.1| YhgF like protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 723

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V+DFGAFV     +DGLVH+S+L+ + +      V  GD V V + + 
Sbjct: 647 KPGMQLQGTVRNVVDFGAFVDIGVKQDGLVHVSKLTDKFLKDPRQAVAVGDIVTVWVEEV 706

Query: 678 DD-RGKIKLSM 687
           D+ R +I L+M
Sbjct: 707 DEQRQRIALTM 717


>gi|313202750|ref|YP_004041407.1| SSU ribosomal protein s1p [Paludibacter propionicigenes WB4]
 gi|312442066|gb|ADQ78422.1| SSU ribosomal protein S1P [Paludibacter propionicigenes WB4]
          Length = 682

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I    IR+        +   +E    K+N +    V    + +      ++  + I   
Sbjct: 205 QIDVKPIRDY----DVFVNKTMEFKVIKINHEFKNVVVSHKALIEAELELQK--KEIIGK 258

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  ++ +G V  +  +G F+   G  DGL+HI+ LS  RV+   ++V     + V +LD
Sbjct: 259 LQKGQVLEGTVKNITSYGVFIDL-GGVDGLIHITDLSWGRVSHPEEIVTLDQKLNVVILD 317

Query: 677 FDD-RGKIKLSMKVVDQNTG 695
           FDD + +I L +K +  +  
Sbjct: 318 FDDEKKRIALGLKQLSAHPW 337



 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I     +   +  +V    +FG FV      DGL+HIS LS  ++V   S+  + 
Sbjct: 422 DPWDNIETRYALGTKHVAKVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKVKHPSEFTQI 481

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G  + V++L+ D    ++ L  K +++N  
Sbjct: 482 GAEIDVQVLEIDKANRRLSLGHKQLEENPW 511



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
               +++   +V    KG+VV + D+GAFV      +GL+H+S++S  + +    D +K 
Sbjct: 335 HPWDALSADLKVGDKVKGKVVVMADYGAFVEIAAGVEGLIHVSEMSWSQHLRSAQDFLKV 394

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V   +L  D D  K+ L +K +  +    I
Sbjct: 395 GDEVETVILTLDRDERKMSLGIKQLKSDPWDNI 427


>gi|224006742|ref|XP_002292331.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
 gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
          Length = 287

 Score = 73.0 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++           +  G V  +  +GAFV   G   GL+HISQ+S +R+     V++ 
Sbjct: 176 RAVVEEQMAELSRGDVIDGIVKALKPYGAFVEVGGM-SGLLHISQISMDRITDLEQVLQP 234

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G  +   ++D D   G+I LS K ++   G
Sbjct: 235 GQKIKCMIIDHDKVNGRIALSTKTLEPEPG 264


>gi|308179664|ref|YP_003923792.1| transcription accessory protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045155|gb|ADN97698.1| transcription accessory protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 723

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G V  V+DFGAFV     +DGLVH+S+L+ + +      V  GD V V + + D+ R 
Sbjct: 652 LQGTVRNVVDFGAFVDIGVKQDGLVHVSKLTDKFLKDPRQAVAVGDIVTVWVEEVDEQRQ 711

Query: 682 KIKLSM 687
           +I L+M
Sbjct: 712 RIALTM 717


>gi|205374682|ref|ZP_03227476.1| general stress protein 13 [Bacillus coahuilensis m4-4]
          Length = 103

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  +  G+V  +  +GAFV       GLVHIS+++   V   ++ +K GD V VK+L  
Sbjct: 6   EVGNVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDVNEHLKIGDEVSVKVLAV 65

Query: 678 DDRGK 682
           +  GK
Sbjct: 66  EAEGK 70


>gi|77409732|ref|ZP_00786392.1| ribosomal protein S1 [Streptococcus agalactiae COH1]
 gi|77171660|gb|EAO74869.1| ribosomal protein S1 [Streptococcus agalactiae COH1]
          Length = 103

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
                DGLVHISQ+S +RV    DV+  G  V VK+L+ + D  ++ LSMK +++   +
Sbjct: 1   MLPGIDGLVHISQISHKRVENPKDVLSAGQEVTVKVLEVNSDAERVSLSMKALEERPAQ 59


>gi|322369170|ref|ZP_08043735.1| translation initiation factor IF-2 subunit alpha [Haladaptatus
           paucihalophilus DX253]
 gi|320550902|gb|EFW92551.1| translation initiation factor IF-2 subunit alpha [Haladaptatus
           paucihalophilus DX253]
          Length = 266

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V ++ DFG FV      D  GLVH+S++++  +    D V  G TV  K+
Sbjct: 7   PDTGELVVGKVDEIEDFGVFVDLEEYEDKRGLVHVSEVASGWIKNVRDHVNTGQTVVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQN 693
           LD D+   +I LS+K V+++
Sbjct: 67  LDVDEGSQQIDLSIKDVNEH 86


>gi|325840214|ref|ZP_08166981.1| Tex-like protein N-terminal domain protein [Turicibacter sp. HGF1]
 gi|325490362|gb|EGC92687.1| Tex-like protein N-terminal domain protein [Turicibacter sp. HGF1]
          Length = 728

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 562 QIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           ++   +G+G   +  I++       +  D+    +  S + ++E  +  +          
Sbjct: 606 KLMATLGVGEHTLNDILDAFVAPNRDPRDEVAAPLLRSDVLKLEDLKPGME--------- 656

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V  V+DFG FV      DGLVH+S++    V    DV   GD V V +   D +
Sbjct: 657 --LQGTVRNVVDFGVFVDCGVKEDGLVHLSKMKKGFVKHPMDVASVGDIVKVWVESVDLN 714

Query: 680 RGKIKLSM 687
           R ++ L+M
Sbjct: 715 RKRLALTM 722


>gi|310659605|ref|YP_003937326.1| transcriptional accessory protein [Clostridium sticklandii DSM 519]
 gi|308826383|emb|CBH22421.1| transcriptional accessory protein [Clostridium sticklandii]
          Length = 717

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIAS 597
                 +  EFT +VE +++    I   + +G   +R IV E +    +I D+G +    
Sbjct: 576 EDAQYPEKTEFTSKVEELSLR--DIAQELEIGLPTLRDIVKELSKPGRDIRDEGAMAPIL 633

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
            S                  E+  I +G V  V+DFGAFV      DGLVHISQLS + V
Sbjct: 634 RSDILKLE----------DLEIGMILQGTVRNVVDFGAFVDIGIKNDGLVHISQLSDKYV 683

Query: 658 AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
               +VV  GD V V+++D D  RGK+ LSMK
Sbjct: 684 KNPMEVVSVGDVVEVRVIDIDRQRGKVSLSMK 715


>gi|293375523|ref|ZP_06621800.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
 gi|292645863|gb|EFF63896.1| S1 RNA binding domain protein [Turicibacter sanguinis PC909]
          Length = 728

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 562 QIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           ++   +G+G   +  I++       +  D+    +  S + ++E  +  +          
Sbjct: 606 KLMATLGVGEHTLNDILDAFVAPNRDPRDEVAAPLLRSDVLKLEDLKPGME--------- 656

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              +G V  V+DFG FV      DGLVH+S++    V    DV   GD V V +   D +
Sbjct: 657 --LQGTVRNVVDFGVFVDCGVKEDGLVHLSKMKKGFVKHPMDVASVGDIVKVWVESVDLN 714

Query: 680 RGKIKLSM 687
           R ++ L+M
Sbjct: 715 RKRLALTM 722


>gi|15645027|ref|NP_207197.1| 30S ribosomal protein S1 [Helicobacter pylori 26695]
 gi|2500384|sp|P56008|RS1_HELPY RecName: Full=30S ribosomal protein S1
 gi|2313498|gb|AAD07462.1| ribosomal protein S1 (rps1) [Helicobacter pylori 26695]
          Length = 556

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 251 DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 309

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 310 NDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 365

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 366 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 424

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 425 IKVKILKINKKDKKISLSAKHL 446



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 505 EITCVVVAIEKSNNKVRASVHRLERKKEKE 534


>gi|281353342|gb|EFB28926.1| hypothetical protein PANDA_013257 [Ailuropoda melanoleuca]
          Length = 200

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 3/57 (5%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           GLVH + +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 1   GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 57


>gi|229552040|ref|ZP_04440765.1| S1 domain RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|258539453|ref|YP_003173952.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           Lc 705]
 gi|229314617|gb|EEN80590.1| S1 domain RNA-binding protein [Lactobacillus rhamnosus LMS2-1]
 gi|257151129|emb|CAR90101.1| RNA binding S1 domain protein [Lactobacillus rhamnosus Lc 705]
          Length = 725

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD V V +   D +R 
Sbjct: 654 LEGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDLNRE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|217032275|ref|ZP_03437772.1| hypothetical protein HPB128_142g23 [Helicobacter pylori B128]
 gi|216946041|gb|EEC24654.1| hypothetical protein HPB128_142g23 [Helicobacter pylori B128]
          Length = 551

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 333 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFL 388

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 389 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHL 441



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 155 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 205

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 206 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 264

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++    I
Sbjct: 265 SIKATIEDPWGEI 277



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 445 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 499

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 500 EITCVVVAIEKSNNKVRASVHRLERKKEKE 529


>gi|303244492|ref|ZP_07330827.1| translation initiation factor 2, alpha subunit [Methanothermococcus
           okinawensis IH1]
 gi|302485190|gb|EFL48119.1| translation initiation factor 2, alpha subunit [Methanothermococcus
           okinawensis IH1]
          Length = 281

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  +I  G V+ V  FGAFV       ++G+VHIS++S+  V    D VK+G  V  K+
Sbjct: 24  PDEGEIVIGTVIDVKPFGAFVELLEYPKKEGMVHISEVSSGWVKNIRDFVKKGQRVVAKV 83

Query: 675 LDFDDR-GKIKLSMKVV 690
           +  + R G+I LS+K V
Sbjct: 84  MRVNKRKGQIDLSLKRV 100


>gi|255723463|ref|XP_002546665.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           tropicalis MYA-3404]
 gi|240130796|gb|EER30359.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           tropicalis MYA-3404]
          Length = 1027

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D     +     + E    + +I S    P+V  +  G V  +  +GAF+   G   GL 
Sbjct: 70  DKISKKRPLGPKVNETTNKKTIILSPEKPPQVGDVLPGIVEGIQAYGAFIKL-GNTSGLC 128

Query: 648 HISQLSTE--RVAKTSDVVKEGDTVWVKLLDFDDRG---KIKLSMKVVDQNTGK 696
           HISQ+S +  ++A  SD +K    V+VK+ D  ++G   KI LSM+ +DQ TG+
Sbjct: 129 HISQISFDGSKIASVSDYLKPRQAVYVKITDIQNQGSRKKISLSMRGIDQVTGE 182


>gi|199597509|ref|ZP_03210938.1| Transcriptional accessory protein [Lactobacillus rhamnosus HN001]
 gi|199591532|gb|EDY99609.1| Transcriptional accessory protein [Lactobacillus rhamnosus HN001]
          Length = 725

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD V V +   D +R 
Sbjct: 654 LEGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDLNRE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|217034328|ref|ZP_03439744.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10]
 gi|216943213|gb|EEC22680.1| hypothetical protein HP9810_491g21 [Helicobacter pylori 98-10]
          Length = 552

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I N      IG
Sbjct: 247 DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDKKISLSAKHL 442



 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|172036568|ref|YP_001803069.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
 gi|171698022|gb|ACB51003.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
          Length = 302

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S    I AAR       D  E  ++  G+V ++  +G FV F G   GL+HI+Q
Sbjct: 177 TNKLVLSQRKAIAAAR------MDKLEAGQLVTGKVSRIQPYGVFVDFEG-VSGLLHITQ 229

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           +S  RV   + + K    + V +L  D+ + +I LS K+++   G+
Sbjct: 230 VSGSRVDDLNHLFKYNQDIKVMILSIDEYKNRIALSTKILENYPGE 275



 Score = 41.4 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 E  ++ +G+V++  D GAFV   G   G V I+++  +     ++++   +   
Sbjct: 26  QYDYKCEKGQVIRGKVIQHTDDGAFVDIGGKSAGFVPINEVDLQSRPNLAEILPLDEERE 85

Query: 672 VKLL-DFDDRGKIKLSMKVVD 691
             ++ + +  G++KLS + + 
Sbjct: 86  FLVISEQNAEGQVKLSRRQLQ 106


>gi|296122660|ref|YP_003630438.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
 gi|296015000|gb|ADG68239.1| RNA binding S1 domain protein [Planctomyces limnophilus DSM 3776]
          Length = 736

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G ++ V+DFGAFV        L+H+S++S + +    ++V  GD V V + D D +R 
Sbjct: 664 LEGTILNVVDFGAFVDIGLKDSALIHVSKMSNQFIRNPHEIVSVGDRVTVWVADIDKERR 723

Query: 682 KIKLSM 687
           ++ LS+
Sbjct: 724 RVGLSL 729


>gi|227535276|ref|ZP_03965325.1| S1 domain RNA-binding protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187160|gb|EEI67227.1| S1 domain RNA-binding protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 730

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 606 AREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           A  ++R      E  K+    +G V  V+DFGAFV      DGLVHIS+++ + V     
Sbjct: 639 AAPILRQDVLTMEDLKVGMKLEGTVRNVVDFGAFVDIGVKHDGLVHISKMARKFVRDPKT 698

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           VV  GD V V +   D  R +I+L+M  VD   G
Sbjct: 699 VVAIGDIVEVWIESVDLARERIQLTM--VDPAMG 730


>gi|225631240|ref|ZP_03787929.1| ribosomal protein S1 [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591065|gb|EEH12258.1| ribosomal protein S1 [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 530

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             +       V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G
Sbjct: 299 PWQDAESKYPVDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRG 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V+VK+L  D  + ++ LSMK    N  +
Sbjct: 359 QEVYVKILSIDIAKSRMSLSMKRCVDNPWQ 388



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   Q+++   +     + IV +   K      G + ++   + E   A E I+ +  +
Sbjct: 162 HVDLKQVKDAKHLIETEQKFIVLKMDKK-----QGNIVVSRKLVLEKLHAGEKIKFLESL 216

Query: 617 PEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            E   I +G++  +  +G FV        G  DGL+HI+ +S  RV+  S V   G T+ 
Sbjct: 217 NEG-DIIEGKIKSITHYGVFVGIHESDVVGVIDGLLHITDISWSRVSHPSAVFTCGQTIK 275

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK++  D +  KI L +K ++ +  + 
Sbjct: 276 VKIIKIDKENAKISLGVKQLEDSPWQD 302



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
             +   +      I  G+V         V           +G +++   S       SD 
Sbjct: 386 PWQVFINKYPPGSIVSGEVKNNTGSYVSVAFGDSEIDENVEGTIYVKDFSWS--KNGSDE 443

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +K    GD +  K++  + +R +I L +K ++ +  + ++
Sbjct: 444 IKKYNVGDKIEAKVIRANVNRARIYLGIKQIEYDPLEELI 483


>gi|238583089|ref|XP_002390134.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
 gi|215453188|gb|EEB91064.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
          Length = 172

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 8/150 (5%)

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A   I PV+  +      + I  ++ + DG    A +  ++LAL +AG+P+   V  +  
Sbjct: 17  AEVNIEPVIQTSLYPRSQIDIYVQVLQQDGGVLQACINATTLALANAGIPLLDFVCAVTG 76

Query: 465 GLVKDGDDFIILSDISG-DEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           G+         L D++  +E+ L ++   V      +T + M+ +   +  +      + 
Sbjct: 77  GV----HSTSPLLDLTQLEENDLPNVTVAVMPRSGKVTLVSMETR---LHVDRFEEIFRL 129

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRV 553
           A      I  EM + + E   +L E    +
Sbjct: 130 AGEAGTVIHGEMKRAVKERAARLVESMRSI 159


>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
          Length = 214

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R++   R ++ Q G++ R  GS     G T+ +V    G  E      + + +       
Sbjct: 15  REAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVAC-YGPEEAA---RAGTFSDMGVLEC 70

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
           H    P A  + + +      + G  R     I P +        T+ + + I E DG  
Sbjct: 71  HITRAPFAEQKRATLQETDA-DRGLRRDLDAMIKPAILLEKYPKSTIALQATILEDDGGV 129

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIA 463
             A V  SS AL++AG+ +   V  IA
Sbjct: 130 LPALVMASSTALVEAGIELRDIVTAIA 156



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAV 70
           R L L+TG ++R + G+     G T V+                D   L  +     +A 
Sbjct: 21  RSLALQTGVVSR-AAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHITRAPFAE 79

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHV 128
            K      R   + T+ +  + R +D  I+P  L  K  K+   +   +++ D    P  
Sbjct: 80  QK------RATLQETDADRGLRRDLDAMIKPAILLEKYPKSTIALQATILEDDGGVLP-- 131

Query: 129 VSMVAASAALMLSGLPFEGPVVGA 152
             ++A+S AL+ +G+     V   
Sbjct: 132 ALVMASSTALVEAGIELRDIVTAI 155


>gi|207093018|ref|ZP_03240805.1| 30S ribosomal protein S1 [Helicobacter pylori HPKX_438_AG0C1]
          Length = 369

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+      R   L+ +   + +   ++ +       + +    I +      IG
Sbjct: 64  DEVYVKAIAYDAEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIG 122

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 123 NDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 178

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 179 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 237

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 238 IKVKILKINKKDKKISLSAKHL 259



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +  +    ++ E  +   G V ++  FG FV      +GLVH S++S +         KE
Sbjct: 4   KRQLEVSKELLEATEPVLGVVRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKE 62

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           GD V+VK + +D ++ ++ LS+K   ++  + I
Sbjct: 63  GDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEI 95



 Score = 41.4 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F+H     D L+    L+  +     D +K G 
Sbjct: 263 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIH-ADGIDVLIKNEDLNPLK----KDEIKIGQ 317

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 318 EITCVVVAIEKSNNKVRASVHRLERKKEKE 347


>gi|55644221|ref|XP_523406.1| PREDICTED: exosome complex component MTR3 [Pan troglodytes]
          Length = 272

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 12/198 (6%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D++     RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E        
Sbjct: 23  DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGSGP 81

Query: 369 TQ---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                      R   +  +   P A G   R       E       + A+ P +      
Sbjct: 82  AGAGGEAPAALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYP 140

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              L + + + E  GS+  A +  ++LAL DAGV +   V G  + L   G     L D 
Sbjct: 141 RAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAP-GPAPTWLLDP 199

Query: 480 SGDEDHLGHMDFKVAGTD 497
           +  E+        VA   
Sbjct: 200 TRLEEERAAAGLTVALMP 217



 Score = 38.0 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 27/210 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---------------LTVNYQERTYAV 70
           Q+ G+     G T VL  V   R  + G+                   L  +++   +A 
Sbjct: 48  QAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFA- 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                G  RR       E  ++  +  ++ P          Q+ ++ +  +   S    +
Sbjct: 107 -----GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAA 161

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYING---QYVLNPR-LDEDQGSLDLFVS--GTQDA 184
           + AA+ AL  +G+     VVG  +    G    ++L+P  L+E++ +  L V+     + 
Sbjct: 162 LTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQ 221

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPV 214
           V  +         +   +A+  G   C+ +
Sbjct: 222 VAGLLGSGEGGLTESWAEAVRLGLEGCQRL 251


>gi|317178641|dbj|BAJ56429.1| 30S ribosomal protein S1 [Helicobacter pylori F30]
          Length = 552

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 334 QEVDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSTKHL 442



 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVEV-KGVEGLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKYKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|332364567|gb|EGJ42336.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1059]
          Length = 120

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++    +    D VK    V V+++D
Sbjct: 1   MKIGDKLKGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKISQQVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKSSLSMRTLEEE 78


>gi|255953027|ref|XP_002567266.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588977|emb|CAP95098.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1806

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            KV   D    K+  S    +              +  +I  G+V KV +FGAF+   G  
Sbjct: 1283 KVTFVDAEQGKLQLSLKESVLDPNFKAPITLKDLKEGQIVTGKVRKVEEFGAFIVIDGSS 1342

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     +  EGD V  K++  D D  KI  S+K 
Sbjct: 1343 NISGLCHRSEMADKRVEDARKLYDEGDAVKAKIIKIDLDSKKISFSLKA 1391



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 608  EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +   S     + N I +G V +V D G FV         V +S LS   + +  D  +  
Sbjct: 1218 DREISSLKEVKPNDIIRGFVRRVTDSGLFVAISHDITAYVRVSDLSDSYLKEWKDSFQPD 1277

Query: 668  DTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
              V  K+   D ++GK++LS+K  V+D N   PI
Sbjct: 1278 QLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPI 1311



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           ++I     +   SS  +  +AA++       +  +   +  G V  +   G FV F G  
Sbjct: 801 LDIQRAHRLIKVSSRASLKKAAKQKNIPGQFEEVQEGSLVTGFVRNITPDGVFVEFLGGL 860

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
            GL+    +    + +    + +  T+ V +   D +  +  LSMK V  +   P
Sbjct: 861 TGLLPKRLIEDANLKQPHYGLTKAQTIVVNVQSVDQEFKRFILSMKPVQASQAAP 915



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +V +   GA V F G   G + +S++S   +   +   + G  V V  L  D   G++
Sbjct: 658 GTIVSLQSHGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHALSVDVSLGRL 717

Query: 684 KLSMKV 689
            +S K 
Sbjct: 718 AVSCKD 723


>gi|167763615|ref|ZP_02435742.1| hypothetical protein BACSTE_01990 [Bacteroides stercoris ATCC
           43183]
 gi|167698909|gb|EDS15488.1| hypothetical protein BACSTE_01990 [Bacteroides stercoris ATCC
           43183]
          Length = 710

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  + +FGAFV      +GL+H+SQL+ + V+  +++V     V VK+L  D +R +I
Sbjct: 642 GIVGNITNFGAFVDIGIKENGLIHLSQLAQKYVSNPNEIVSIHQQVRVKVLSVDTERKRI 701

Query: 684 KLSM 687
           +L+M
Sbjct: 702 QLTM 705


>gi|298735946|ref|YP_003728471.1| 30S ribosomal protein S1 [Helicobacter pylori B8]
 gi|298355135|emb|CBI66007.1| small subunit ribosomal protein S1 [Helicobacter pylori B8]
          Length = 556

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 338 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFL 393

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 394 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHL 446



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++    I
Sbjct: 270 SIKATIEDPWGEI 282



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 450 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 504

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 505 EITCVVVAIEKSNNKVRASVHRLERKKEKE 534


>gi|157364475|ref|YP_001471242.1| RNA-binding S1 domain-containing protein [Thermotoga lettingae TMO]
 gi|157315079|gb|ABV34178.1| RNA binding S1 domain protein [Thermotoga lettingae TMO]
          Length = 117

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  + K +V ++  FGA V       G +HIS+++ + V    D +K+G  V  K++  
Sbjct: 3   KVGDVVKSKVTQITKFGAIVTLENGEAGFIHISKIANQYVKNVEDFLKQGQEVTAKIIGK 62

Query: 678 DDRGKIKLSMKVVDQNTGK 696
              GK +LS+K   ++  K
Sbjct: 63  TKDGKWELSLKEQKESDQK 81


>gi|330952126|gb|EGH52386.1| ribonuclease PH [Pseudomonas syringae Cit 7]
          Length = 92

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
           +V + +  R  GR ++ +R I       +   GS L   GDT+ I  V++    +     
Sbjct: 17  SVQVSQMKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSV----ENGVPR 72

Query: 365 SLSGTQRNDFMMHYNFLPCA 384
            L G  +      Y  LP A
Sbjct: 73  FLKGQGQGWLTAEYGMLPRA 92


>gi|258508244|ref|YP_003170995.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           GG]
 gi|257148171|emb|CAR87144.1| RNA binding S1 domain protein [Lactobacillus rhamnosus GG]
 gi|259649561|dbj|BAI41723.1| transcription accessory protein [Lactobacillus rhamnosus GG]
          Length = 725

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD V V +   D +R 
Sbjct: 654 LEGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDLNRE 713

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 714 RIQLTM 719


>gi|227545200|ref|ZP_03975249.1| S1 domain RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300909122|ref|ZP_07126583.1| YhgF like protein [Lactobacillus reuteri SD2112]
 gi|227184809|gb|EEI64880.1| S1 domain RNA-binding protein [Lactobacillus reuteri CF48-3A]
 gi|300892987|gb|EFK86346.1| YhgF like protein [Lactobacillus reuteri SD2112]
          Length = 727

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            I      NV  +G       +++   K   DD    +  +  ++ ++     +R     
Sbjct: 575 KIIQAAGINVDELGTPSADDKLKKIDVKQFTDDQVGTETVTDIISSLQKPGRDLRDSMPA 634

Query: 617 P------------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           P            +     +G V  V+DFG FV      DGLVH+S++S + +     +V
Sbjct: 635 PLLRHDVMTIEDLKPGMKLQGTVRNVVDFGVFVDIGVKHDGLVHVSKMSKQFIRDPRAMV 694

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSM 687
             GD V V + D D  R +I+L+M
Sbjct: 695 AVGDIVDVWIDDVDLKRQRIQLTM 718


>gi|239631671|ref|ZP_04674702.1| transcriptional accessory protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066283|ref|YP_003788306.1| transcriptional accessory protein [Lactobacillus casei str. Zhang]
 gi|239526136|gb|EEQ65137.1| transcriptional accessory protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438690|gb|ADK18456.1| Transcriptional accessory protein [Lactobacillus casei str. Zhang]
          Length = 725

 Score = 72.6 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 606 AREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           A  ++R      E  K+    +G V  V+DFGAFV      DGLVHIS+++ + V     
Sbjct: 634 AAPILRQDVLTMEDLKVGMKLEGTVRNVVDFGAFVDIGVKHDGLVHISKMARKFVRDPKT 693

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
           VV  GD V V +   D  R +I+L+M
Sbjct: 694 VVAIGDIVEVWIESVDLARERIQLTM 719


>gi|237736431|ref|ZP_04566912.1| transcription accessory protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229421473|gb|EEO36520.1| transcription accessory protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 721

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           ++    +I +G V  V+ FGAF+      D L+HIS++S + +   S V+  G  + V++
Sbjct: 646 NLQPGMEI-EGTVRNVVKFGAFIDIGLKNDALLHISEISNKFIDDPSKVLSVGQIIKVRI 704

Query: 675 LDFD-DRGKIKLSMKV 689
            D D +R ++ L+ K 
Sbjct: 705 KDIDKERERVGLTKKE 720


>gi|226310093|ref|YP_002769987.1| hypothetical protein BBR47_05060 [Brevibacillus brevis NBRC 100599]
 gi|226093041|dbj|BAH41483.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 720

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G V  V+DFGAFV      DGLVHIS+L    V    +VV  GD V V +++ D+ R 
Sbjct: 649 LQGTVRNVVDFGAFVDIGLKNDGLVHISRLKKGFVKHPLEVVTVGDIVDVWVVEIDEKRQ 708

Query: 682 KIKLSM 687
           ++ ++M
Sbjct: 709 RVGMTM 714


>gi|330813567|ref|YP_004357806.1| SSU ribosomal protein S1p [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486662|gb|AEA81067.1| SSU ribosomal protein S1p [Candidatus Pelagibacter sp. IMCC9063]
          Length = 565

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I   +E    K++      +    + L E++   +    +    ++N I +G V  +  +
Sbjct: 158 INKPLEFYIIKIDNVRMNVISSRRAILEEVKN--QNKDQVISKYKLNDIVEGNVKAITSY 215

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G FV      D L+H S++S  +++  +++   GDTV V+++D D +  +I LS+K +  
Sbjct: 216 GLFVSI-ENLDCLLHSSEVSHLKISNLNEMFSVGDTVKVQIIDIDLETKRISLSIKAMLP 274

Query: 693 NT 694
           + 
Sbjct: 275 DP 276



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID + T +I+ S  A +    +   +I +  +V   Y  ++ K+ DFGAF        
Sbjct: 256 IDIDLE-TKRISLSIKAMLP---DPFITIGEKYQVGSDYDVKITKLSDFGAFAEIDEGVV 311

Query: 645 GLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GL+H S++   ++      + K GD   V+L + D ++ KI  S K    N 
Sbjct: 312 GLIHSSEMKHMQKNVNPKSIFKVGDVAKVRLKEVDTEKRKISFSYKDTQPNP 363


>gi|260891275|ref|ZP_05902538.1| ribosomal protein S1 [Leptotrichia hofstadii F0254]
 gi|260858951|gb|EEX73451.1| ribosomal protein S1 [Leptotrichia hofstadii F0254]
          Length = 600

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +   +  +  G++ ++ DFG  +    A  G +HIS++S  +V   ++  K 
Sbjct: 158 KIEEEKYFEKVNIGDVVTGKIKEIFDFGIILDL-EATSGFIHISEISWNQVDNLTEKYKI 216

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           GD +  K+++ D ++ ++KLS+K + ++  
Sbjct: 217 GDEISAKIIEKDAEKNRLKLSIKQLSEDPW 246



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++  AK+   +D    +  S    +E       ++ +   +  I +  + +V DFG  + 
Sbjct: 303 DKFSAKIIQIEDEKKNVKLSVKQLLE---NPWDTVKEKYHIGDIIEKPITEVFDFGLLIS 359

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGK 696
                DGL+H+S LS +R    +   K GD +  K++DF D++ +I LS K +  +  +
Sbjct: 360 LEKDIDGLLHVSDLSYKRETNLTSKYKAGDVIKFKIVDFNDEKNRITLSAKALLDDRWE 418



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +  + +  +KG+V+ V D+G FV      +  +H ++ S +R        K G
Sbjct: 415 DRWEVLEETYDFDNAFKGKVMNVQDYGIFVELEKGIEVFIHKNEFSWDRKEHKE--YKVG 472

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           D V  K++  D    K+  S+K ++++  K +
Sbjct: 473 DEVEFKIIVVDKLAKKLSGSIKQLEKSPWKEV 504



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I ++  AK+ I+ D        S+ ++    +   +      V  + +  V  V+DFG 
Sbjct: 215 KIGDEISAKI-IEKDAEKNRLKLSIKQLSE--DPWVAFAASHNVGDVVEAVVKDVLDFGI 271

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNT 694
            V   G   G VH+S+L+    AK     KEGD    K++   D++  +KLS+K + +N 
Sbjct: 272 VVTVDGN-SGFVHVSELAWHNGAKELKNYKEGDKFSAKIIQIEDEKKNVKLSVKQLLENP 330

Query: 695 G 695
            
Sbjct: 331 W 331



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +   + +T+  +   I   ++V++ +    V      +G++   +L+ E +   S+    
Sbjct: 498 KSPWKEVTEQYKKGNIVNTEIVEIQENFVLVKLTDRFNGIIPKRELAEEFLKDISEKFSV 557

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVD 691
           GD V   + D +D+ K I LS+K V 
Sbjct: 558 GDKVEAVITDINDKRKSIALSVKKVQ 583


>gi|261838388|gb|ACX98154.1| 30S ribosomal protein S1 [Helicobacter pylori 51]
          Length = 552

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + + A+   +  R   L+ +   + +   ++ +       + +    I N      IG
Sbjct: 247 DEVYIKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSKYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDKKISLSAKHL 442



 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLETTEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V++K + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVEV-KGVEGLVHYSEISHKGPVNPEKYYKEGDEVYIKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-TDGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|14521054|ref|NP_126529.1| translation initiation factor IF-2 subunit alpha [Pyrococcus abyssi
           GE5]
 gi|9910734|sp|Q9V0E4|IF2A_PYRAB RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|5458271|emb|CAB49760.1| eIF2A translation initiation factor eIF-2, subunit alpha
           [Pyrococcus abyssi GE5]
          Length = 275

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V ++ ++GAF+       ++  +HIS++++  V    D +KE
Sbjct: 1   MPRRAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  V  K++  D R G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPRKGHIDLSLRRVTQQQRK 91


>gi|319937112|ref|ZP_08011519.1| transcription accessory protein [Coprobacillus sp. 29_1]
 gi|319807478|gb|EFW04071.1| transcription accessory protein [Coprobacillus sp. 29_1]
          Length = 715

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    +G V  V+DFGAFV      DGLVHIS++S +++  T DV   GD + V + D 
Sbjct: 642 KVGMKLQGVVRNVVDFGAFVDIGLKNDGLVHISKMSKQKIKHTLDVCNVGDILDVYVYDI 701

Query: 678 D-DRGKIKLSMKVV 690
           D  + ++ LS+  V
Sbjct: 702 DLKKKRVALSLMEV 715


>gi|297813179|ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320310|gb|EFH50732.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 416

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 263 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 321

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 322 RDRGRVSLSTKKLEPTPG 339


>gi|225619757|ref|YP_002721014.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
 gi|225214576|gb|ACN83310.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
          Length = 554

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 114/323 (35%), Gaps = 30/323 (9%)

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
           +    G   R E          I  ++       Y +   SEI   D   S         
Sbjct: 49  DSKSEGKIKRSEFDKEPTIGEEIEAIVSGEDDKGYVILSKSEI---DKRKSQE------- 98

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIIL-----SDISGDEDHLGHMDFKVAGTDSGIT 501
            L+D  V  +  + G+   ++K G    I+        S  +   G  +    G +    
Sbjct: 99  -LIDNAVKNNTAITGVVKEVIKGGFKVSIMGHQAFCPFSQIDLARGIKEADYIGKEYEFR 157

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE------- 554
            ++ + +   +S  +++   Q A         + + +++     + +F   +E       
Sbjct: 158 VIKKNGRDVVVSRRVLLEETQNAGIETFLNNLKENDIINGKVKNIEKFGAFIEITPGFDG 217

Query: 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
            +AIP      V+     VI    E+    ++ID +           +     +      
Sbjct: 218 FLAIPNMSWDKVVNPK-SVISKGEERMFKVLHIDKENRKVDLGLKQLD----EDPWGKFV 272

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVK 673
           +   +  I  G+V  V  FGAFV      +GLVH+S LS    V   SD VK+G  +  K
Sbjct: 273 EQYHIGDIINGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECK 332

Query: 674 LLDFD-DRGKIKLSMKVVDQNTG 695
           +LD +    K+ L +K V +N  
Sbjct: 333 ILDMNAAERKLTLGLKQVKENPW 355



 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKEGDTVWVKLLDFD-DR 680
            K +V +++   A        +G+  IS       +    D VKEG+ V + ++  D D+
Sbjct: 368 VKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDK 427

Query: 681 GKIKLSMKVVDQNTGK 696
            +IKLS K    +  +
Sbjct: 428 QRIKLSYKHTKDSPWR 443



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             R          I  G V  ++D GA V      +G +H+SQ+   + +   +VVK G+
Sbjct: 441 PWRLFEKAHPQGSIVDGTVKAIVDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEVVKVGE 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           T    + + +  + +I LS +   +   K
Sbjct: 501 TYPFVVREVNQSKRRISLSRREYMEAQNK 529



 Score = 38.4 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            EIE  + +  S        KI KG+VV+  D   F+ F    +G +  S+   E     
Sbjct: 10  DEIEFRKALEESDNTFLSRGKIVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKEPT--- 66

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
                 G+ +   +   DD+G + LS   +D+   + ++
Sbjct: 67  -----IGEEIEAIVSGEDDKGYVILSKSEIDKRKSQELI 100


>gi|119188875|ref|XP_001245044.1| hypothetical protein CIMG_04485 [Coccidioides immitis RS]
          Length = 298

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 14/166 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E  +  ++  G    
Sbjct: 15  RLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVH-GPAEG-KRSETAGGGGGA 72

Query: 373 DFMMHYNFLPCATGEVSRM-----------GAPSRR-EIGHGRLARRAIHPVLPQTAQFP 420
              +  N    A  +  +            G   R+         R A  P L       
Sbjct: 73  VVSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPH 132

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
            T+ +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 133 STISVHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGM 178



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 16/144 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES---- 82
           S G+     G TVV+  V      K  +               +    G   +++S    
Sbjct: 37  SSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAVVSVVVNIAGFAGVDRKKKSMMAG 96

Query: 83  ------RPTENE--ILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMV 132
                    + +    +S  +  + +P         +   V ++V+  D         + 
Sbjct: 97  GGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHSTISVHVSVLSSDGSIFA--ACIN 154

Query: 133 AASAALMLSGLPFEGPVVGAQVDY 156
           A + AL+ +G+P  G +    V  
Sbjct: 155 ACTLALVDAGIPMPGLLCACTVGM 178


>gi|58698448|ref|ZP_00373357.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535040|gb|EAL59130.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 485

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             +       V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G
Sbjct: 234 PWQDAESKYPVDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRG 293

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V+VK+L  D  + ++ LSMK    N  +
Sbjct: 294 QEVYVKILSIDIAKSRMSLSMKRCVDNPWQ 323



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   Q+++   +     + IV +   K      G + ++   + E   A E I+ +  +
Sbjct: 97  HVDLKQVKDAKHLIETEQKFIVLKMDKK-----QGNIVVSRKLVLEKLHAGEKIKFLESL 151

Query: 617 PEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            E   I +G++  +  +G FV        G  DGL+HI+ +S  RV+  S V   G T+ 
Sbjct: 152 NEG-DIIEGKIKSITHYGVFVGIHESDVVGVIDGLLHITDISWSRVSHPSAVFTCGQTIK 210

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK++  D +  KI L +K ++ +  + 
Sbjct: 211 VKIIKIDKENAKISLGVKQLEDSPWQD 237



 Score = 38.7 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
             +   +      I  G+V         V           +G +++   S       SD 
Sbjct: 321 PWQVFINKYPPGSIVSGEVKNNTGSYVSVAFGDSEIDENVEGTIYVKDFSWS--KNGSDE 378

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +K    GD +  K++  + +R +I L +K ++ +  + ++
Sbjct: 379 IKKYNVGDKIEAKVIRANVNRARIYLGIKQIEYDPLEELI 418


>gi|319902565|ref|YP_004162293.1| Tex-like protein [Bacteroides helcogenes P 36-108]
 gi|319417596|gb|ADV44707.1| Tex-like protein [Bacteroides helcogenes P 36-108]
          Length = 713

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 14/164 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M+K L  S  +L   + +   + I P++  +   +G   ++ I+++   K   D  
Sbjct: 561 IVEQMAKDLECSVAEL--ISNKELRLKINPERYLSPT-VGMPTLKDILQELD-KPGRDPR 616

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +K        +      +R+I D+ E  ++  G V  + +FGAFV      +GL+H+S
Sbjct: 617 GPIK--------MFEFDRNVRTINDLREGMEL-PGIVGNITNFGAFVDIGIKENGLIHLS 667

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           QL+   ++  + VV     + VK+L  D  R +I+L++  V+Q 
Sbjct: 668 QLAERFISDPNKVVSIHQHLRVKVLSIDIARKRIQLTLIGVEQE 711


>gi|30692346|ref|NP_850903.1| RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent
           of ribosome [Arabidopsis thaliana]
 gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana]
 gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana]
 gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]
 gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana]
 gi|332006494|gb|AED93877.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
          Length = 416

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 263 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 321

Query: 679 -DRGKIKLSMKVVDQNTG 695
            DRG++ LS K ++   G
Sbjct: 322 RDRGRVSLSTKKLEPTPG 339


>gi|281212246|gb|EFA86406.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 1232

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            P VN IY G+V  + D+G FV   G    R+GLVH+SQ+ + +V   SDVVK    V  
Sbjct: 288 EPGVNSIYSGKVTGINDYGFFVSLDGIVGKREGLVHVSQIRSTKVQHPSDVVKRNQVVK- 346

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPI 698
             +      K+ LSMK VDQ TG  +
Sbjct: 347 VKVLSVVGSKVSLSMKDVDQQTGADL 372


>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
           Go1]
 gi|29336794|sp|Q8PTT7|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
 gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 266

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 94/266 (35%), Gaps = 32/266 (12%)

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            ++  +   ++   +  +M+    R DGR  +  R++  +  ++ +  GS+    G+TQ 
Sbjct: 2   KKMSEIIATLKKDYIYNLMIKD-KRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQV 60

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +V V L T     + DS         + +    P A+ E    G P    I   R+  R 
Sbjct: 61  LVGVKLQTGTP--FPDS---QDEGVIITNLELNPIASPEFEP-GPPREDAIEMARVVDRG 114

Query: 409 IH--------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP------ 454
           I          +     +  + + I   I  +DG+   A+   +  ALM   VP      
Sbjct: 115 IRESGAIDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGL 174

Query: 455 -------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
                  + +   GI +  +       ++ D S DE+ +      +  +  G  A    M
Sbjct: 175 GENVPLAMKEMPVGITLAKIGSK----LMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKM 230

Query: 508 KIGGISENIMVMALQQAKRGRLHILN 533
               ++E  +  A+  A      I  
Sbjct: 231 GPVPLTEAELFEAIDMAIEKAAEIRG 256



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 35/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           R LKLET  I++ ++G+   T G T VL  V         D QD   +  N +    A  
Sbjct: 35  RELKLETNVISK-AEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASP 93

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN-------ETQVI-INVMQHDLE 123
           +   G       P E+ I ++R++DR IR   +   K           ++ I+V   + +
Sbjct: 94  EFEPGP------PREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHILNND 147

Query: 124 SSPHVVSMVAASAALMLSGLPF-------EGPVV------GAQVDYINGQYVLNPRLDED 170
            +    S +AA AALM + +P          P+       G  +  I  + +++P LDE+
Sbjct: 148 GNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKLMVDPSLDEE 207

Query: 171 ---QGSLDLFVSGTQDAVLMVELEANQ-LSEDVVLDAIIFGHNECKPV 214
              +  L +  S +  +V  ++      L+E  + +AI     +   +
Sbjct: 208 AVCETKLTIV-SSSDGSVAGMQKMGPVPLTEAELFEAIDMAIEKAAEI 254


>gi|19705086|ref|NP_602581.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|50401078|sp|Q8RI52|ISPH_FUSNN RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase
 gi|19713008|gb|AAL93880.1| LytB protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 827

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + GK I+ IV+    K++  D    KI  S      A +E   +      V +I    V 
Sbjct: 431 VNGKKIQVIVK--DIKMDPKDKKNRKITYSVKDIRLAEQEKEFAG---LAVGQIVDCVVT 485

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +V+DFG  V     + G +HIS++S +R+ K SD  K GD +   ++  D+  + +KLS+
Sbjct: 486 EVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSI 544

Query: 688 KVVDQNTG 695
           K ++++  
Sbjct: 545 KKLEEDPW 552



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKE 666
           +   ++ +  +V+   +G V KV+ +GAFV      +GLVHIS  S  +     +D VKE
Sbjct: 550 DPWATVANEFKVDDEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKE 609

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            + + V++ D   +  K+KL +K +  N  +
Sbjct: 610 REKIKVRITDLHPEDRKLKLGIKQLVANPWE 640



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNNKKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D   EGD V  ++++ + +  KIKLS
Sbjct: 749 FIELIKGIDGFIPTQFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLS 800



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      ++ + KG+VV+V  FG FV      D  VH S  +           + G+
Sbjct: 638 PWETAEKDFAIDTVIKGKVVEVKPFGIFVEIADGIDAFVHSSDYNWVGEEIPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNNKKIKGSLKALRKSPWE 724


>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
          Length = 292

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT---REDEQYVDSLSGT 369
           R+DGR    +R + AQ+     + GSS    G+T  I +V  G    R  E    +  G 
Sbjct: 15  RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVH-GPAEGRRSEATGPAREGA 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLR 424
             +  +    F   +  +  +     G   R+       A R A  P L        T+ 
Sbjct: 74  VVSVAVNVAGF---SGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTIS 130

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 131 LHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 86/258 (33%), Gaps = 46/258 (17%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE----- 81
           S G+   + G TVV+  V      +  +   P                 G  R++     
Sbjct: 37  SSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATG 96

Query: 82  -SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                +    ++  +  + +P         +   + ++V+  D   S     + A + AL
Sbjct: 97  GGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDG--SLFAACINACTLAL 154

Query: 139 MLSGLPFEGPVVGAQVD--------------YINGQY--VLNPRLDE---DQGSL-DLFV 178
           + +G+P  G +    V                + G     L+P LD    ++  L  + V
Sbjct: 155 VDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGGINESLDPLLDMSMPEEQELPFMTV 214

Query: 179 SGTQDAVLMVELEANQLSEDVVLDAI---------------IFGHNECKPVIEAISKLAK 223
           + T  A    +   +Q  E+ +L  +                 G + CK V E ++ + K
Sbjct: 215 ANTNPAPTGDDSMDDQ-EENQMLSIVQMGAGVHISYLETMFAVGLDGCKQVREILNGVVK 273

Query: 224 MCAKEPIVIDSKDFSKLE 241
              ++ +  + +  + +E
Sbjct: 274 AAGRKVLEGEGEVLTGVE 291


>gi|154249912|ref|YP_001410737.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153848|gb|ABS61080.1| hydroxymethylbutenyl pyrophosphate reductase [Fervidobacterium
           nodosum Rt17-B1]
          Length = 854

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 20/202 (9%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGM 569
            IM   +++    R  IL  +  +L +    + +     + +      + P      I  
Sbjct: 536 KIMKFLIKEINPERKRILLSLKALLPDPWENVAKKYQIGQTVTGVVTSVKPFGFFVKIED 595

Query: 570 GGKVIRGIVEQTG-------AKVNIDDDGTVKIASSSLAEIEAAR-------EMIRSITD 615
           G +    I E            V+I+D   V+I   +  + +          +    I  
Sbjct: 596 GVEGFVPIEEVFWGRKGNINEVVSINDFVKVQILEINPEKRQMKLSYKSVIGDPWEKIAK 655

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 I +G+V KV+  G  +          +IS++S   V    DV+KEG++V  ++L
Sbjct: 656 KLSEGDISEGKVAKVLPNGVIIEIEPEVTAFCNISEVSWNFVDNIEDVIKEGESVKFQVL 715

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
             D +  KI++S++    N  K
Sbjct: 716 KIDPENKKIRVSIRKAKPNPWK 737



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++    ++ +   G V  V  FG FV      +G V I ++   R    ++VV   
Sbjct: 562 DPWENVAKKYQIGQTVTGVVTSVKPFGFFVKIEDGVEGFVPIEEVFWGRKGNINEVVSIN 621

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V V++L+ +   + +KLS K V  +  + I 
Sbjct: 622 DFVKVQILEINPEKRQMKLSYKSVIGDPWEKIA 654



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  + D GAFV   G   G +  S++S     K  D +  G  +   + + 
Sbjct: 486 KPGDVVEGIVESISDNGAFVKIAGITTGFIPNSEISYNTSIKAKDALTVGKIMKFLIKEI 545

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           + +R +I LS+K +  +  + + 
Sbjct: 546 NPERKRILLSLKALLPDPWENVA 568



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +    L E            +     KI +G V ++   G  +   G   G+V + +L 
Sbjct: 297 NLKQEVLEESFEQLLKEHENMNQVGRGKIVEGIVTEITPTGLTIDLGGKVTGVVPLEELF 356

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD 679
            E         K G+ + V++   ++
Sbjct: 357 KELNE-----YKVGEQIKVRVEKINE 377


>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 291

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT---REDEQYVDSLSGT 369
           R+DGR    +R + AQ+     + GSS    G+T  I +V  G    R  E    +  G 
Sbjct: 15  RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVH-GPAEGRRSEATGPAREGA 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLR 424
             +  +    F   +  +  +     G   R+       A R A  P L        T+ 
Sbjct: 74  VVSVAVNVAGF---SGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTIS 130

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 131 LHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 85/257 (33%), Gaps = 45/257 (17%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE----- 81
           S G+   + G TVV+  V      +  +   P                 G  R++     
Sbjct: 37  SSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATG 96

Query: 82  -SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                +    ++  +  + +P         +   + ++V+  D   S     + A + AL
Sbjct: 97  GGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDG--SLFAACINACTLAL 154

Query: 139 MLSGLPFEGPVVGAQVD--------------YING-QYVLNPRLDE---DQGSL-DLFVS 179
           + +G+P  G +    V                + G    L+P LD    ++  L  + V+
Sbjct: 155 VDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINESLDPLLDMSMPEEQELPFMTVA 214

Query: 180 GTQDAVLMVELEANQLSEDVVLDAI---------------IFGHNECKPVIEAISKLAKM 224
            T  A    +   +Q  E+ +L  +                 G + CK V E ++ + K 
Sbjct: 215 NTNPAPTGDDSMDDQ-EENQMLSIVQMGAGVHISYLETMFAVGLDGCKQVREILNGVVKA 273

Query: 225 CAKEPIVIDSKDFSKLE 241
             ++ +  + +    +E
Sbjct: 274 AGRKVLEGEGEILPGVE 290


>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
          Length = 291

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT---REDEQYVDSLSGT 369
           R+DGR    +R + AQ+     + GSS    G+T  I +V  G    R  E    +  G 
Sbjct: 15  RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVH-GPAEGRRSEATGPAREGA 73

Query: 370 QRNDFMMHYNFLPCATGEVSRM----GAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLR 424
             +  +    F   +  +  +     G   R+       A R A  P L        T+ 
Sbjct: 74  VVSVAVNVAGF---SGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTIS 130

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
           +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 131 LHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGM 172



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 45/257 (17%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE----- 81
           S G+   + G TVV+  V      +  +   P                 G  R++     
Sbjct: 37  SSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAVVSVAVNVAGFSGVDRKKKSATG 96

Query: 82  -SRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAAL 138
                +    ++  +  + +P         +   + ++V+  D   S     + A + AL
Sbjct: 97  GGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVSVLSSDG--SLFAACINACTLAL 154

Query: 139 MLSGLPFEGPVVGAQVD--------------YING-QYVLNPRLDE---DQGSL-DLFVS 179
           + +G+P  G +    V                + G    L+P LD    ++  L  + V+
Sbjct: 155 VDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINESLDPLLDMSMPEEQELPFMTVA 214

Query: 180 GTQDAVLMVELEANQLSEDVVLDAI---------------IFGHNECKPVIEAISKLAKM 224
            T  A    +   +Q  E+ +L  +                 G + CK V E ++ + K 
Sbjct: 215 NTNPAPTGDDSMDDQ-EENQMLSIVQMGAGVHISYLETMFAVGLDGCKQVREILNGVVKA 273

Query: 225 CAKEPIVIDSKDFSKLE 241
             ++ +  + +  + +E
Sbjct: 274 AGRKVLEGEGEILTGVE 290


>gi|296329347|ref|ZP_06871848.1| bifunctional penicillin tolerance protein LytB/ ribosomal protein
           S1 RpsA [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153703|gb|EFG94520.1| bifunctional penicillin tolerance protein LytB/ ribosomal protein
           S1 RpsA [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 827

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
           + GK I+ IV+    K++  D    KI  S      A +E   +      V +I    V 
Sbjct: 431 VNGKKIQVIVK--DIKMDPKDKKNRKITYSVKDIRLAEQEKEFAG---LAVGQIVDCVVT 485

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +V+DFG  V     + G +HIS++S +R+ K SD  K GD +   ++  D+  + +KLS+
Sbjct: 486 EVLDFGLAVDINTLK-GFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSI 544

Query: 688 KVVDQNTG 695
           K ++++  
Sbjct: 545 KKLEEDPW 552



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKE 666
           +   ++ +  +V+   +G V KV+ +GAFV      +GLVHIS  S  +     +D VKE
Sbjct: 550 DPWATVANEFKVDDEVEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKE 609

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G+ + V++ D   +  K+KL +K +  N  +
Sbjct: 610 GEKIKVRITDLHPEDRKLKLGIKQLVANPWE 640



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNNKKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F+      DG +     S E +    D   EGD V  ++++ + +  KIKLS
Sbjct: 749 FIELIKGIDGFIPTQFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLS 800



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +      ++ + KG+VV+V  FG FV      D  VH S  +           + G+
Sbjct: 638 PWETAEKDFAIDTVIKGKVVEVKPFGIFVEIADGIDAFVHSSDYNWVGEEIPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNNKKIKGSLKALRKSPWE 724


>gi|257053851|ref|YP_003131684.1| translation initiation factor IF-2 subunit alpha [Halorhabdus
           utahensis DSM 12940]
 gi|256692614|gb|ACV12951.1| translation initiation factor 2, alpha subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 266

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++  G+V ++ DFG FV      D  GL HIS++++  +    D V EG TV  K+
Sbjct: 7   PEPGELVVGRVDEIEDFGVFVDLLEYEDKRGLAHISEVASGWIKNVRDHVNEGQTVVAKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPIV 699
           LD D D  +I LS+K V+ +  K  +
Sbjct: 67  LDVDKDAQQIDLSIKDVNDHQRKDTI 92


>gi|159472705|ref|XP_001694485.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
 gi|40641370|emb|CAE51165.1| ribosomal protein S1 homologue [Chlamydomonas reinhardtii]
 gi|158276709|gb|EDP02480.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
          Length = 436

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 25/207 (12%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMA---IPPDQIRNVIGM 569
               +   +++              ++S + ++   F  R+  +    I        +  
Sbjct: 181 PLEALRPGMKRDFMVVEDEEEYGQVIVSLAAMEATTFWQRIRQLQEEDITVTVSVESVNK 240

Query: 570 GGKVIRGIV-------EQTGAKVNIDD-------DGTVKIASSSLAE------IEAAREM 609
           GG +++  +        Q G  +  D+       +  VK               + A   
Sbjct: 241 GGMLVKFGIYDGFIPVSQFGPSITPDNMESLVGFELQVKFLEVDEEAERLVFSHKRASST 300

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           + +     +V  +  G V  V  +GAF+   G   GL+H+SQ+S +RV     +++EGD 
Sbjct: 301 VSNDIQGFKVGDVVAGVVQSVKPYGAFIDL-GGVTGLLHVSQISHDRVLVLDKILQEGDK 359

Query: 670 VWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           + V +L  D +RG++ LS K ++   G
Sbjct: 360 IKVMILSQDRERGRVTLSTKKLEPTPG 386



 Score = 39.1 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E     V+ DD G            E   EM+ ++    +V     G V++V D GA+V 
Sbjct: 104 EDLDEMVDYDDFGD----EEYADMYEEVEEMLEAVDYEFKVGDKVSGTVIEVDDDGAYVE 159

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
                     +++ S  R+    + ++ G      +++ ++  G++ +S+  ++  T
Sbjct: 160 IGAKAIAFCPVTECSFARLKTPLEALRPGMKRDFMVVEDEEEYGQVIVSLAAMEATT 216


>gi|18977512|ref|NP_578869.1| translation initiation factor IF-2 subunit alpha [Pyrococcus
           furiosus DSM 3638]
 gi|23821748|sp|Q8U1R5|IF2A_PYRFU RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|18893219|gb|AAL81264.1| translation initiation factor eIF-2, subunit alpha [Pyrococcus
           furiosus DSM 3638]
          Length = 275

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  ++    V +V ++GAF+       ++G +HIS++++  V    D ++E
Sbjct: 1   MPRRAREYPEEGELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLRE 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           G  V  K++  D  +G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPKKGHIDLSLRRVTQQQRK 91


>gi|313127247|ref|YP_004037517.1| translation initiation factor 2 subunit alpha (aeif-2a)
           [Halogeometricum borinquense DSM 11551]
 gi|312293612|gb|ADQ68072.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Halogeometricum borinquense DSM 11551]
          Length = 265

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V ++ DFG FV      D  GL HIS++++  +    D V+EG TV  K+
Sbjct: 7   PDSGELVVGKVDEITDFGVFVDLEEYEDTRGLCHISEVASGWIKNVRDHVREGQTVVAKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKP 697
           LD D    +I LS+K V+++  K 
Sbjct: 67  LDVDTGSQQIDLSIKDVNEHQRKE 90


>gi|288904714|ref|YP_003429935.1| RNA binding protein [Streptococcus gallolyticus UCN34]
 gi|306830717|ref|ZP_07463882.1| RNA binding protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306832894|ref|ZP_07466027.1| RNA binding protein [Streptococcus bovis ATCC 700338]
 gi|325977635|ref|YP_004287351.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731439|emb|CBI12991.1| putative RNA binding protein [Streptococcus gallolyticus UCN34]
 gi|304424969|gb|EFM28102.1| RNA binding protein [Streptococcus bovis ATCC 700338]
 gi|304427225|gb|EFM30332.1| RNA binding protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177563|emb|CBZ47607.1| Polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 118

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++DFD+   K
Sbjct: 8   TGTITGIKPYGAFVALDNGTTGLIHISEIKTGYIENIYQLLSVGEKVLVQVVDFDEFTQK 67

Query: 683 IKLSMKVVDQN 693
             LS++ +++ 
Sbjct: 68  ASLSLRTLEEE 78


>gi|146298782|ref|YP_001193373.1| RNA-binding S1 domain-containing protein [Flavobacterium johnsoniae
           UW101]
 gi|146153200|gb|ABQ04054.1| RNA binding S1 domain protein [Flavobacterium johnsoniae UW101]
          Length = 707

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I  G V  + +FG FV       GLVHISQL    V+  ++VVK    V VK+ + 
Sbjct: 635 KTGMILPGIVNNITNFGCFVDIGIKESGLVHISQLKAGFVSDVNEVVKLHQHVDVKVTEV 694

Query: 678 D-DRGKIKLSM 687
           D DR +I+L+M
Sbjct: 695 DEDRKRIQLTM 705


>gi|225630820|ref|YP_002727611.1| ribosomal protein S1 [Wolbachia sp. wRi]
 gi|225592801|gb|ACN95820.1| ribosomal protein S1 [Wolbachia sp. wRi]
          Length = 550

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             +       V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G
Sbjct: 299 PWQDAESKYPVDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRG 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V+VK+L  D  + ++ LSMK    N  +
Sbjct: 359 QEVYVKILSIDIAKSRMSLSMKRCVDNPWQ 388



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   Q+++   +     + IV +   K      G + ++   + E   A E I+ +  +
Sbjct: 162 HVDLKQVKDAKHLIETEQKFIVLKMDKK-----QGNIVVSRKLVLEKLHAGEKIKFLESL 216

Query: 617 PEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            E   I +G++  +  +G FV        G  DGL+HI+ +S  RV+  S V   G T+ 
Sbjct: 217 NEG-DIIEGKIKSITHYGVFVGIHESDVVGVIDGLLHITDISWSRVSHPSAVFTCGQTIK 275

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK++  D +  KI L +K ++ +  + 
Sbjct: 276 VKIIKIDKENAKISLGVKQLEDSPWQD 302



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
             +   +      I  G+V         V           +G +++   S       SD 
Sbjct: 386 PWQVFINKYPPGSIVSGEVKNNTGSYVSVAFGDSEIDENVEGTIYVKDFSWS--KNGSDE 443

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +K    GD +  K++  + +R +I L +K ++ +  + ++
Sbjct: 444 IKKYNVGDKIEAKVIRANVNRARIYLGIKQIEYDPLEELI 483


>gi|42520896|ref|NP_966811.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410637|gb|AAS14745.1| ribosomal protein S1, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 550

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             +       V+ ++KG V  + D+G FV      +GLVH S+++  +     S +V  G
Sbjct: 299 PWQDAESKYPVDSVHKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRG 358

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V+VK+L  D  + ++ LSMK    N  +
Sbjct: 359 QEVYVKILSIDIAKSRMSLSMKRCVDNPWQ 388



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +   Q+++   +     + IV +   K      G + ++   + E   A E I+ +  +
Sbjct: 162 HVDLKQVKDAKHLIETEQKFIVLKMDKK-----QGNIVVSRKLVLEKLHAGEKIKFLESL 216

Query: 617 PEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            E   I +G++  +  +G FV        G  DGL+HI+ +S  RV+  S V   G T+ 
Sbjct: 217 NEG-DIIEGKIKSITHYGVFVGIHESDVVGVIDGLLHITDISWSRVSHPSAVFTCGQTIK 275

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           VK++  D +  KI L +K ++ +  + 
Sbjct: 276 VKIIKIDKENAKISLGVKQLEDSPWQD 302



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
             +   +      I  G+V         V           +G +++   S       SD 
Sbjct: 386 PWQVFINKYPPGSIVSGEVKNNTGSYVSVAFGDSEIDENVEGTIYVKDFSWS--KNGSDE 443

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +K    GD +  K++  + +R +I L +K ++ +  + ++
Sbjct: 444 IKKYNVGDKIEAKVIRANVNRARIYLGIKQIEYDPLEELI 483


>gi|14590809|ref|NP_142881.1| translation initiation factor IF-2 subunit alpha [Pyrococcus
           horikoshii OT3]
 gi|6016312|sp|O58655|IF2A_PYRHO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|294979442|pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
           Pyrococcus Horikoshii Ot3
 gi|3257375|dbj|BAA30058.1| 275aa long hypothetical translation initiation factor eIF-2 alpha
           chain [Pyrococcus horikoshii OT3]
          Length = 275

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V ++ ++GAF+       ++  +HIS++++  V    D +KE
Sbjct: 1   MPRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  V  K++  D R G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPRKGHIDLSLRRVTQQQRK 91


>gi|239614080|gb|EEQ91067.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ER-3]
 gi|327358030|gb|EGE86887.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1811

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D  + K+  S    +              +  +I  G+V  V +FGAF+   G  
Sbjct: 1289 RIILADAESNKLQMSLKESVLEPNYKTPITIKDLKRGQIVTGKVRNVEEFGAFIVIDGTA 1348

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H ++++  +V     V ++GD V  K++  D ++ +I L +K 
Sbjct: 1349 NLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKA 1397



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G ++ +   GA V F G   G + +S++S   +   +     G  V V  L+ D
Sbjct: 660 GTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNVD 713



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN I +G V +V + G FV         + IS LS   + +  +  + 
Sbjct: 1223 QDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQV 1282

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  +++  D +  K+++S+K  V++ N   PI
Sbjct: 1283 DQLVRGRIILADAESNKLQMSLKESVLEPNYKTPI 1317



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 622 IYKGQVVKVMD-----FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           + +G++ K++       G  V       GLV    +S  ++       +EG  V  ++L 
Sbjct: 563 VVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILS 622

Query: 677 FD-DRGKIKLSMKVVDQNTGKP 697
            + D+ +++L++K    N+  P
Sbjct: 623 VNLDKRQLRLTLKKSLLNSESP 644


>gi|261204755|ref|XP_002629591.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
 gi|239587376|gb|EEQ70019.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
          Length = 1817

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D  + K+  S    +              +  +I  G+V  V +FGAF+   G  
Sbjct: 1289 RIILADAESNKLQMSLKESVLEPNYKTPITIKDLKRGQIVTGKVRNVEEFGAFIVIDGTA 1348

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H ++++  +V     V ++GD V  K++  D ++ +I L +K 
Sbjct: 1349 NLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKA 1397



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G ++ +   GA V F G   G + +S++S   +   +     G  V V  L+ D
Sbjct: 660 GTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNVD 713



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN I +G V +V + G FV         + IS LS   + +  +  + 
Sbjct: 1223 QDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQV 1282

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  +++  D +  K+++S+K  V++ N   PI
Sbjct: 1283 DQLVRGRIILADAESNKLQMSLKESVLEPNYKTPI 1317



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 622 IYKGQVVKVMD-----FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           + +G++ K++       G  V       GLV    +S  ++       +EG  V  ++L 
Sbjct: 563 VVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILS 622

Query: 677 FD-DRGKIKLSMKVVDQNTGKP 697
            + D+ +++L++K    N+  P
Sbjct: 623 VNLDKRQLRLTLKKSLLNSESP 644


>gi|54035138|gb|AAH84130.1| LOC495036 protein [Xenopus laevis]
          Length = 77

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVW 671
           + ++PE+++I+KG+V  V ++GAF+   G R  GLVH S +S+  V + S+VV  G+ VW
Sbjct: 1   MENLPELHEIFKGEVASVTEYGAFIKIPGCRRQGLVHKSHMSSSHVDRPSEVVDVGEKVW 60

Query: 672 VKLLDFD 678
           VK++  +
Sbjct: 61  VKVIGRE 67


>gi|255073571|ref|XP_002500460.1| predicted protein [Micromonas sp. RCC299]
 gi|226515723|gb|ACO61718.1| predicted protein [Micromonas sp. RCC299]
          Length = 294

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 627 VVKVMDFGAFVHF------CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           VV + DFGAFV            +GL+HIS+LS  RVA   D+++ GD V VK+LD    
Sbjct: 104 VVSLSDFGAFVELSQDDPQAPRLEGLIHISELSWSRVAHPRDILRVGDEVDVKVLDVAPA 163

Query: 681 G-----KIKLSMKVVDQNT 694
                 ++  S+K +  + 
Sbjct: 164 EGRRPARVTFSLKQLQADP 182


>gi|262038695|ref|ZP_06012055.1| protein YhgF [Leptotrichia goodfellowii F0264]
 gi|261747247|gb|EEY34726.1| protein YhgF [Leptotrichia goodfellowii F0264]
          Length = 721

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 13/136 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
            I  D+I      G +  + + +     + +  D+    +  S +  ++  +E       
Sbjct: 597 TINLDKIIKENDFGTQTAKDVYDALLKDRRDPRDEFEKPLLRSDILSMDDLKE------- 649

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 I +G V  V  FG FV      D L+HISQLS + VA  + ++  G  +  K+L
Sbjct: 650 ----GMILEGTVRNVAKFGVFVDIGLKNDALIHISQLSDKFVADPTKIMSVGKIIKAKIL 705

Query: 676 DFD-DRGKIKLSMKVV 690
             D +R ++ L++K +
Sbjct: 706 SVDKERARVSLTIKGI 721


>gi|261839788|gb|ACX99553.1| 30S ribosomal protein S1 [Helicobacter pylori 52]
          Length = 552

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHL 442



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V VK + +D ++ ++ L
Sbjct: 207 VRQITPFGIFVEV-KGVEGLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|126654692|ref|ZP_01726226.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
 gi|126623427|gb|EAZ94131.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
          Length = 304

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S    I AAR       D  E  ++  G+V ++  +G FV F G   GL+HI+Q
Sbjct: 177 TNKLVLSQRKAIAAAR------MDKLEAGQLVSGKVSRIQPYGVFVDFEG-VSGLLHITQ 229

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           +S  RV   + + K    + V +L  D+ + +I LS K+++   G+
Sbjct: 230 VSGSRVDDLNHIFKYNQDIKVMILSIDEYKNRIALSTKILENYPGE 275



 Score = 38.7 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 E  ++ +G+V++  D GAFV   G   G V I+++  +     ++++   +   
Sbjct: 26  QYDYKCEKGQVIRGKVIQHTDEGAFVDIGGKSAGFVPINEVDLQSRPNLAEILPLDEERE 85

Query: 672 VKLL-DFDDRGKIKLSMKVVD 691
             +  + +  G++KLS + + 
Sbjct: 86  FLVTSEQNADGQVKLSRRQLQ 106


>gi|295134296|ref|YP_003584972.1| RNA binding protein with S1 RNA-binding domain [Zunongwangia
           profunda SM-A87]
 gi|294982311|gb|ADF52776.1| putative RNA binding protein with S1 RNA-binding domain
           [Zunongwangia profunda SM-A87]
          Length = 708

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E IR ITD+    ++  G V  + +FG FV     + GLVHIS+LS   V   + +V+  
Sbjct: 627 ESIREITDLKPGMRL-PGLVNNITNFGCFVDIGLKQSGLVHISKLSNTYVNDVTQIVRLN 685

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
             V V +L+ D DR +I+LSM
Sbjct: 686 QEVEVTVLEVDLDRKRIQLSM 706


>gi|195978653|ref|YP_002123897.1| hypothetical protein Sez_1551 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225868025|ref|YP_002743973.1| S1 RNA binding domain protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871057|ref|YP_002747004.1| S1 RNA binding domain protein [Streptococcus equi subsp. equi 4047]
 gi|195975358|gb|ACG62884.1| general stress protein [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225700461|emb|CAW94876.1| putative S1 RNA binding domain protein [Streptococcus equi subsp.
           equi 4047]
 gi|225701301|emb|CAW98307.1| putative S1 RNA binding domain protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 120

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G +  +  +GAFV       GL+HIS++ T  +     +++ G+ V V+++D
Sbjct: 1   MKIGDKLHGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQILRLGEAVLVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+   K+ LS++ +++ 
Sbjct: 61  YDEYSHKVSLSLRTLEEE 78


>gi|167756737|ref|ZP_02428864.1| hypothetical protein CLORAM_02284 [Clostridium ramosum DSM 1402]
 gi|237734456|ref|ZP_04564937.1| polyribonucleotide nucleotidyltransferase [Mollicutes bacterium D7]
 gi|167702912|gb|EDS17491.1| hypothetical protein CLORAM_02284 [Clostridium ramosum DSM 1402]
 gi|229382276|gb|EEO32367.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp. D7]
          Length = 125

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I   ++  +  +GAF        GL+HIS++S + V      VK G+++ VK+
Sbjct: 3   QKIKRGDIIDVKITGIQPYGAFASLPDNSTGLIHISEISDKFVKSIDSFVKVGESIKVKV 62

Query: 675 LDFD-DRGKIKLSMKVVD 691
           +DFD +    KLS+K +D
Sbjct: 63  IDFDQETNHAKLSLKAID 80


>gi|159129996|gb|EDP55110.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus A1163]
          Length = 1822

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--G 641
            +V + D    ++  S    +              +V +   G+V KV +FGAF+      
Sbjct: 1284 RVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQFVTGKVRKVEEFGAFIVIDRSA 1343

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     + +EGD V  K++  D + GKI  S+K 
Sbjct: 1344 NISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIKIDRESGKISFSLKA 1392



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN + +G V +V D G FV         V +S LS   + +  D  + 
Sbjct: 1218 QDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSYLKEWKDSFQV 1277

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D ++G++++S+K  V+D     PI
Sbjct: 1278 DQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPI 1312



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +   GA V F G+  G + +S++S   +   S   ++G  V V  L  D   GK+
Sbjct: 656 GTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKL 715

Query: 684 KLSMKV 689
            +S K 
Sbjct: 716 AVSCKD 721



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +      ++A       L     V  +S   +        ++A   D    V G   K
Sbjct: 721 DPSTFTETYRKAFEKIQPGLRVTGTVFEKSVDDVLLKLDEFGLIA-RLDLAHVVDGPESK 779

Query: 573 VIRGIVE-QTGAKV------NIDDDGTVKIASSSLAEIEAARE--MIRSITDVPEVNKIY 623
            I  + + + G K+      +I     +   S+  +  +AA++  +     D+ E  ++ 
Sbjct: 780 QISALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEV- 838

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFD-DRG 681
            G V  +   G F+ F G   GLV    L+ E V K   D+VK    V   +   D D  
Sbjct: 839 TGFVRNITSDGLFIEFLGGIIGLVPKRLLADENVNKPDYDMVKS-QLVTATVHSIDRDFQ 897

Query: 682 KIKLSMK 688
           +  LSMK
Sbjct: 898 RFILSMK 904


>gi|241894932|ref|ZP_04782228.1| RNA binding protein [Weissella paramesenteroides ATCC 33313]
 gi|241871650|gb|EER75401.1| RNA binding protein [Weissella paramesenteroides ATCC 33313]
          Length = 132

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               V ++ +G V  +  +GAFV       GL+HIS+  +  + +  D +K G  V V +
Sbjct: 1   MTFHVGQVLEGVVTGIQPYGAFVQLDEKHQGLIHISECRSAFIHEIEDEIKVGQPVRVMI 60

Query: 675 LDFD-DRGKIKLSMKVV 690
           LD D    KI LS + V
Sbjct: 61  LDIDLYSHKISLSRRTV 77


>gi|71002516|ref|XP_755939.1| rRNA biogenesis protein RRP5 [Aspergillus fumigatus Af293]
 gi|66853577|gb|EAL93901.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus Af293]
          Length = 1822

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--G 641
            +V + D    ++  S    +              +V +   G+V KV +FGAF+      
Sbjct: 1284 RVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQFVTGKVRKVEEFGAFIVIDRSA 1343

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     + +EGD V  K++  D + GKI  S+K 
Sbjct: 1344 NISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIKIDRESGKISFSLKA 1392



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN + +G V +V D G FV         V +S LS   + +  D  + 
Sbjct: 1218 QDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSYLKEWKDSFQV 1277

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D ++G++++S+K  V+D     PI
Sbjct: 1278 DQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPI 1312



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +   GA V F G+  G + +S++S   +   S   ++G  V V  L  D   GK+
Sbjct: 656 GTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKL 715

Query: 684 KLSMKV 689
            +S K 
Sbjct: 716 AVSCKD 721



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
             +      ++A       L     V  +S   +        ++A   D    V G   K
Sbjct: 721 DPSTFTETYRKAFEKIQPGLRVTGTVFEKSVDDVLLKLDEFGLIA-RLDLAHVVDGPESK 779

Query: 573 VIRGIVE-QTGAKV------NIDDDGTVKIASSSLAEIEAARE--MIRSITDVPEVNKIY 623
            I  + + + G K+      +I     +   S+  +  +AA++  +     D+ E  ++ 
Sbjct: 780 QISALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEV- 838

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFD-DRG 681
            G V  +   G F+ F G   GLV    L+ E V K   D+VK    V   +   D D  
Sbjct: 839 TGFVRNITSDGLFIEFLGGIIGLVPKRLLADENVNKPDYDMVKS-QLVTATVHSIDRDFQ 897

Query: 682 KIKLSMK 688
           +  LSMK
Sbjct: 898 RFILSMK 904


>gi|308062330|gb|ADO04218.1| 30S ribosomal protein S1 [Helicobacter pylori Cuz20]
          Length = 552

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I N      IG
Sbjct: 247 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDRKISLSAKHL 442



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             +++D +      S         +  +     + E  +   G V ++  FG FV     
Sbjct: 163 CIIHVDKENHSINISRKRFFEVNDKRQLEVSKGLLETTEPVLGVVRQITPFGIFVEV-KG 221

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +GLVH S++S +         KEGD V+VK + +D ++ ++ LS+K   ++  + I
Sbjct: 222 VEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|315230140|ref|YP_004070576.1| eukaryotic translation initiation factor 2 subunit alpha
           [Thermococcus barophilus MP]
 gi|315183168|gb|ADT83353.1| eukaryotic translation initiation factor 2 alpha subunit
           [Thermococcus barophilus MP]
          Length = 275

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V  +  +GAF+       ++G +HIS++++  V    D +KE
Sbjct: 1   MPRRAREFPEEGEFVIATVKSIHPYGAFLTLDEYPGKEGFMHISEVASTWVKNIRDYLKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  V  K++  D R G I LS+K V Q   K
Sbjct: 61  GQKVVAKVIRVDPRKGHIDLSLKRVTQQQRK 91


>gi|326774261|ref|ZP_08233526.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326781494|ref|ZP_08240759.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654594|gb|EGE39440.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326661827|gb|EGE46673.1| RNA binding S1 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 278

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  GQV K++ FGAFV      +GLVH ++   + V     +V EG+ + V++++ D  R
Sbjct: 201 VTTGQVTKLVPFGAFVRIADGVEGLVHNTEFRDDPVEHPGQIVSEGEEITVRIVEVDLVR 260

Query: 681 GKIKLSMKVVDQN 693
            ++ LS + + QN
Sbjct: 261 HRLTLSTRNLPQN 273



 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARD----GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            ++GQV  V +FG FV+  G  D    G +   +LS  R+   +D V  G+ V  +++  
Sbjct: 113 THRGQVQSVHNFGVFVNLDGEPDNQCTGFIRGPELSWRRIGHPADAVTAGERVVGEIIGV 172

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D  RG+++LS+K + ++ 
Sbjct: 173 DTRRGQVQLSLKALQEDP 190


>gi|256852512|ref|ZP_05557888.1| RNA binding S1 [Enterococcus faecalis T8]
 gi|256712366|gb|EEU27398.1| RNA binding S1 [Enterococcus faecalis T8]
          Length = 122

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  +  G +  +  +GAFV       GL+H+S++          ++  G  V V++
Sbjct: 1   MKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQKVTVQV 60

Query: 675 LDFDD-RGKIKLSMKVVD 691
           +D D+   KI LS++ ++
Sbjct: 61  IDVDEYSQKISLSLRTLE 78


>gi|222150831|ref|YP_002559984.1| general stress protein 13 [Macrococcus caseolyticus JCSC5402]
 gi|222119953|dbj|BAH17288.1| general stress protein 13 [Macrococcus caseolyticus JCSC5402]
          Length = 122

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  +  K +V  +  +GAFV      +GL+HIS++  + V   + ++  G  V  K+L+ 
Sbjct: 6   KKGQFIKVKVTGIQPYGAFVETEDHTEGLIHISEVMNDYVHNLNLLLSVGQIVKAKVLNV 65

Query: 678 DDRGKIKLSMKVVD 691
            + GK+ LS+K  D
Sbjct: 66  SEDGKLNLSLKEND 79


>gi|328463197|gb|EGF34930.1| RNA binding S1 domain-containing protein [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 124

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVH+S+++ + V     VV  GD V V +   D +R 
Sbjct: 53  LEGTVRNVVDFGAFVDIGVKHDGLVHVSKMTRKFVRDPKTVVAVGDIVTVWIESVDLNRE 112

Query: 682 KIKLSM 687
           +I+L+M
Sbjct: 113 RIQLTM 118


>gi|308183158|ref|YP_003927285.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
 gi|308065343|gb|ADO07235.1| 30S ribosomal protein S1 [Helicobacter pylori PeCan4]
          Length = 552

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I N      IG
Sbjct: 247 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDRKISLSAKHL 442



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             +++D +      S         +  +    ++ E  +   G V ++  FG FV     
Sbjct: 163 CIIHVDKENHSINISRKRFFEVNDKRQLEVSKELLEATEPVLGVVRQITPFGIFVEV-KG 221

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +GLVH S++S +         KEGD V+VK + +D ++ ++ LS+K   ++  + I
Sbjct: 222 VEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|260887809|ref|ZP_05899072.1| RNA-binding protein [Selenomonas sputigena ATCC 35185]
 gi|330838704|ref|YP_004413284.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
 gi|260862485|gb|EEX76985.1| RNA-binding protein [Selenomonas sputigena ATCC 35185]
 gi|329746468|gb|AEB99824.1| RNA binding S1 domain protein [Selenomonas sputigena ATCC 35185]
          Length = 151

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 47/75 (62%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  + +FGAFV     + GLVHIS+++ E V    D +KE D V VK+L  
Sbjct: 4   EVGSIVEGVVTGITNFGAFVELPEGKVGLVHISEVADEYVRDVHDFLKEKDKVKVKVLTI 63

Query: 678 DDRGKIKLSMKVVDQ 692
           DDRGKI LS+K + +
Sbjct: 64  DDRGKIGLSIKQLQE 78


>gi|223995143|ref|XP_002287255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976371|gb|EED94698.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 398

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVP--EVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           D++       +  + I   +E  +  T +   E+    +  V  +  +GAF+      D 
Sbjct: 110 DEEAHNVDRPARASGIHKHKEGGKQRTALADLEIGASVEATVKTITAYGAFLDIGAKSDA 169

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           LVH+S+LS + VA   DVVK G+ + V+++  D ++ +I ++M+  +   
Sbjct: 170 LVHVSRLSDDFVANVEDVVKAGEKITVRIVSVDTEKNQIAVTMRSEEAEA 219



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 625 GQVVKVMDFGAFVH---------FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           G+VV  + FGAFV            G  DGLVHIS L+  R A  SDV   GD V V++ 
Sbjct: 261 GEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTANVSDVAAVGDKVSVRVR 320

Query: 676 DFDDR-GKIKLSMKVVDQNTGKP 697
             +   G+I LSM   +Q    P
Sbjct: 321 SVEPEAGRISLSMITKEQEEAAP 343


>gi|257125163|ref|YP_003163277.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049102|gb|ACV38286.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
          Length = 600

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 17/136 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           ++ ++  G   K +  I E+  + + I     +K+                   +   + 
Sbjct: 127 EKDKDYTGQKFKFL--IREKNKSNITISRSDLIKL-------------EEEKYFESVNIG 171

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I  G+V +V DFG  +   GA  G +HIS++S E+V   ++  K+GD +  K+++ D +
Sbjct: 172 DIVTGKVKEVFDFGIILDL-GAASGFIHISEVSWEQVDNLTEKYKKGDEISAKIIEKDAE 230

Query: 680 RGKIKLSMKVVDQNTG 695
           + ++KLS+K + ++  
Sbjct: 231 KNRLKLSIKQLSEDPW 246



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   +  I +  + +V DFG  +      DGL+H+S LS +R +  +   K GD
Sbjct: 330 PWNTVKEKYHIGDIIEKPITEVFDFGLLISLEKDIDGLLHVSDLSYKRESNLTSKYKAGD 389

Query: 669 TVWVKLLDF-DDRGKIKLSMKVVDQNTGK 696
            +  K++DF D++ +I LS K +  +  +
Sbjct: 390 LIKFKIVDFNDEKNRITLSAKALLDDRWE 418



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +  + +  + G+V+ V D+G FV      +  +H ++ S ++        K G
Sbjct: 415 DRWEVLEETYDFDNTFTGKVMNVQDYGIFVELEKGIEVFIHRNEFSWDKREHKK--YKVG 472

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           D V  K++  D    K+  S+K ++++  K 
Sbjct: 473 DEVEFKVIIVDKLDKKLSGSIKQLEKSPWKE 503



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            D +      G ++   I+E+   K        +K++   L+E     +   +  +   V
Sbjct: 207 VDNLTEKYKKGDEISAKIIEKDAEK------NRLKLSIKQLSE-----DPWINFAENHNV 255

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
             + +  V  V+DFG  V       G VHIS+L+    AK     KEGD    K++   +
Sbjct: 256 GDVVEAVVKDVLDFG-IVATVDGNSGFVHISELAWHNGAKELKNYKEGDKFSAKIIQIEN 314

Query: 679 DRGKIKLSMKVVDQNTG 695
           ++  +KLS+K + +N  
Sbjct: 315 EKKNVKLSVKQLSENPW 331



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++   KV I D    K++ S        +   +  T+  +   +   ++V++ +    V 
Sbjct: 473 DEVEFKVIIVDKLDKKLSGSIKQL---EKSPWKEATEQCKKGNVINTEIVEIQENFVLVK 529

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686
                +G+V   +LS E +   S+    GD V   + D +++ K I LS
Sbjct: 530 LTDRFNGIVPKRELSEEFLKDISEKFSIGDKVQAVITDINEKRKSIALS 578


>gi|326335610|ref|ZP_08201797.1| YhgF like protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692376|gb|EGD34328.1| YhgF like protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 707

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +V  +  G V  +  FG FV       GLVHISQL    V+  ++VVK  + V VK+++
Sbjct: 634 VQVGMVLNGIVNNITAFGCFVDIGIKESGLVHISQLKDGYVSNVNEVVKLHEQVRVKVVE 693

Query: 677 FDD-RGKIKLSM 687
            D  R +I LSM
Sbjct: 694 VDTVRRRISLSM 705


>gi|313897621|ref|ZP_07831163.1| S1 RNA binding domain protein [Clostridium sp. HGF2]
 gi|312957573|gb|EFR39199.1| S1 RNA binding domain protein [Clostridium sp. HGF2]
          Length = 117

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
             +  +GAFV+     +GL+HIS++S   V      VK  + V VK+LD D+ G   KLS
Sbjct: 14  TGIKPYGAFVYLDSKHNGLIHISEISERFVRDVHTYVKVNERVKVKILDVDEDGMHFKLS 73

Query: 687 MKVVDQNTGK 696
           +K V+ N  +
Sbjct: 74  LKAVEANKAR 83


>gi|255535041|ref|YP_003095412.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341237|gb|ACU07350.1| putative RNA binding protein with S1 RNA-binding domain
           [Flavobacteriaceae bacterium 3519-10]
          Length = 707

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A      +         +   I  G V  +  FG FV       G
Sbjct: 603 DILKELEKPGLDPRKAAKVFEFDPGVKSIKDLKTGMILPGIVNNITAFGCFVDLGIKESG 662

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           LVHISQL    V+  ++VVK    V V++ + D+ R +++LSM
Sbjct: 663 LVHISQLKEGFVSDVNEVVKLHQHVQVRVTEVDEARKRVQLSM 705


>gi|255724334|ref|XP_002547096.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134987|gb|EER34541.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1722

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN  ++G V +           + M     D   V  I++G V    DFG FV   G
Sbjct: 1203 GKIVNCKEEGRVLMTLKESEVNGELKLMK--SFDDLSVGDIFEGTVTSTTDFGVFVKLDG 1260

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
                 GL H S++S   V     +  +GD V VK+L  D ++ ++ L MK 
Sbjct: 1261 TVNVSGLCHHSEISENDVENVKMLFGDGDRVKVKILKIDSEKKQLSLGMKA 1311



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 3/217 (1%)

Query: 474  IILSDISGDEDHLGHMDFKV-AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            +   D++ D      +D K+  G+   +T  Q+D++   +S       +++         
Sbjct: 1006 VSFLDLTNDGSIFQDIDNKLPIGSAIKVTVKQVDLEHKTLSLTTRDKFVEKFDDVVKGET 1065

Query: 533  NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
                 +  +    L E  P V   +   D + N       V       +   ++ID+D  
Sbjct: 1066 YPARVLKIKPNHVLVELGPDVIASSFITDALENYSDKLDHVYEQNDYVSARVLDIDEDNK 1125

Query: 593  VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                S        A + + +     E   + KG +  + + G +V    +   LV +S L
Sbjct: 1126 RISVSLRDDA--EAADKVINSVSDLERGHVIKGFIKNIANNGVYVSLGRSIHALVRVSDL 1183

Query: 653  STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            S   +       K    V  K+++  + G++ +++K 
Sbjct: 1184 SDSYLKDWKKFFKPNQMVIGKIVNCKEEGRVLMTLKE 1220



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           K +  G  V F G     +  +++S   V   S+ +K G  V V++LD + D  ++ +++
Sbjct: 596 KFVPNGCIVKFFGNLRAFLPKTEISETFVDNASNYLKLGQIVKVRVLDINKDEERLIVTL 655

Query: 688 KV 689
           K 
Sbjct: 656 KQ 657


>gi|294868136|ref|XP_002765399.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
 gi|239865418|gb|EEQ98116.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
          Length = 1016

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 537 KVLSESRLQLGEFT----PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGT 592
                 R  +        P V  M +   +     G         V+    K+    +G 
Sbjct: 38  NARKHVRQTMENHWDINDPDVADMVVHLARESRKEGKDSSQKADPVDTFCEKL----EGV 93

Query: 593 VKIASSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHF---CGARDGLVH 648
               S + A+I       RS    P E+  I++G V +VM++G FV F    G ++GLVH
Sbjct: 94  GAETSRNTADILMGAPTKRSSDLQPLELYTIHRGTVQRVMEYGCFVAFRTQEGEKEGLVH 153

Query: 649 ISQL-----STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           + ++     +       SD+VK   +V+VK++      KI LSM+  DQ TG+ +
Sbjct: 154 VGEILPASSAGRSRMSASDLVKRNQSVYVKIVGLAGS-KISLSMREADQKTGEDL 207


>gi|125624444|ref|YP_001032927.1| general stress protein GSP13 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493252|emb|CAL98219.1| general stress protein GSP13 [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 156

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFC---------GARDGLVHISQLSTERVAKT 660
            +     P++  I + +++ + D+GAFV F            + GL+HIS++ +  V   
Sbjct: 12  HKMDKKSPKIGDIVEVEIIGMQDYGAFVKFFLQNPETNEKIEQKGLIHISEIQSGYVKSI 71

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            D+ K G  +  +++D D+  GKI LS++ +++N 
Sbjct: 72  HDIAKIGQKIMAQIIDIDEYNGKISLSIRSLEKNP 106


>gi|330833236|ref|YP_004402061.1| RNA binding S1 domain-containing protein [Streptococcus suis ST3]
 gi|329307459|gb|AEB81875.1| RNA binding S1 domain protein [Streptococcus suis ST3]
          Length = 713

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVK 629
           +  T  K+ +  +    I +  L      R+   +     +V  +         +G V  
Sbjct: 579 IADTAEKIGVGQETLKDIVADLLKPGRDLRDDFEAPVLRQDVLDVKDLVVGQELQGTVRN 638

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVA---------KTSDVVKEGDTVWVKLLDFD-D 679
           ++DFGAFV      DGLVHIS++   +             S+V+  G+ V V +++ D  
Sbjct: 639 IVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQVLPHPSEVLAVGEIVTVWVVEVDIK 698

Query: 680 RGKIKLSM 687
           R +I LS+
Sbjct: 699 RNRIGLSL 706


>gi|297380231|gb|ADI35118.1| ribosomal protein S1 [Helicobacter pylori v225d]
          Length = 552

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 31/202 (15%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IG 568
           + + V A+   +  R   L+ +   + +   ++ +       + +    I N      IG
Sbjct: 247 DEVYVKAIAYDEEKRRLSLS-IKATIEDPWEEIQDKLKPGYAIKVVVSNIENYGAFVDIG 305

Query: 569 MGGKVIRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREM 609
              +    + E +  K                   ++ID        S            
Sbjct: 306 NDIEGFLHVSEISWDKNVSHPSNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNR----P 361

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                   +V  + +G+V  + DFGAF++  G  DGL+H      ++  K  D  K GD 
Sbjct: 362 FDVFESKHQVGDVLEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDV 420

Query: 670 VWVKLLDFDDR-GKIKLSMKVV 690
           + VK+L  + +  KI LS K +
Sbjct: 421 IKVKILKINKKDRKISLSAKHL 442



 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             +++D +      S         +  +     + E  +   G V ++  FG FV     
Sbjct: 163 CIIHVDKENHSINISRKRFFEVNDKRQLEVSKGLLEATEPVLGVVRQITPFGIFVEV-KG 221

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +GLVH S++S +         KEGD V+VK + +D ++ ++ LS+K   ++  + I
Sbjct: 222 VEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|255970874|ref|ZP_05421460.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255974449|ref|ZP_05425035.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256761249|ref|ZP_05501829.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
 gi|255961892|gb|EET94368.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255967321|gb|EET97943.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256682500|gb|EEU22195.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
          Length = 123

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               ++  +  G +  +  +GAFV       GL+H+S++          ++  G  V V+
Sbjct: 1   MMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQKVTVQ 60

Query: 674 LLDFDD-RGKIKLSMKVVD 691
           ++D D+   KI LS++ ++
Sbjct: 61  VIDVDEYSQKISLSLRTLE 79


>gi|207108733|ref|ZP_03242895.1| 30S ribosomal protein S1 [Helicobacter pylori HPKX_438_CA4C1]
          Length = 283

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 160 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 210

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V+VK + +D ++ ++ L
Sbjct: 211 VRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSL 269

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 270 SIKATIEDPWEEI 282


>gi|29377359|ref|NP_816513.1| general stress protein 13, putative [Enterococcus faecalis V583]
 gi|256618319|ref|ZP_05475165.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256958132|ref|ZP_05562303.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256960258|ref|ZP_05564429.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|257077405|ref|ZP_05571766.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|257083405|ref|ZP_05577766.1| RNA binding protein S1 [Enterococcus faecalis Fly1]
 gi|257088037|ref|ZP_05582398.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|257091117|ref|ZP_05585478.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|257417064|ref|ZP_05594058.1| RNA binding protein S1 [Enterococcus faecalis AR01/DG]
 gi|257417778|ref|ZP_05594772.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|257420604|ref|ZP_05597594.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|294779675|ref|ZP_06745066.1| putative general stress protein 13 [Enterococcus faecalis PC1.1]
 gi|300860599|ref|ZP_07106686.1| putative general stress protein 13 [Enterococcus faecalis TUSoD
           Ef11]
 gi|29344826|gb|AAO82583.1| general stress protein 13, putative [Enterococcus faecalis V583]
 gi|256597846|gb|EEU17022.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256948628|gb|EEU65260.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256950754|gb|EEU67386.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|256985435|gb|EEU72737.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|256991435|gb|EEU78737.1| RNA binding protein S1 [Enterococcus faecalis Fly1]
 gi|256996067|gb|EEU83369.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|256999929|gb|EEU86449.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|257158892|gb|EEU88852.1| RNA binding protein S1 [Enterococcus faecalis ARO1/DG]
 gi|257159606|gb|EEU89566.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|257162428|gb|EEU92388.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|294453332|gb|EFG21743.1| putative general stress protein 13 [Enterococcus faecalis PC1.1]
 gi|295114274|emb|CBL32911.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Enterococcus sp. 7L76]
 gi|300849638|gb|EFK77388.1| putative general stress protein 13 [Enterococcus faecalis TUSoD
           Ef11]
 gi|323478861|gb|ADX78300.1| general stress protein 13 [Enterococcus faecalis 62]
 gi|327536049|gb|AEA94883.1| general stress protein 13 [Enterococcus faecalis OG1RF]
          Length = 122

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  +  G +  +  +GAFV       GL+H+S++          ++  G  V V++
Sbjct: 1   MKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQKVTVQV 60

Query: 675 LDFDD-RGKIKLSMKVVD 691
           +D D+   KI LS++ ++
Sbjct: 61  IDVDEYSQKISLSLRTLE 78


>gi|325298000|ref|YP_004257917.1| Tex-like protein [Bacteroides salanitronis DSM 18170]
 gi|324317553|gb|ADY35444.1| Tex-like protein [Bacteroides salanitronis DSM 18170]
          Length = 710

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 13/128 (10%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI-------- 622
           + + E+   +  + D+  +   +  L E+E      R+ + +    P V+ +        
Sbjct: 582 KSLRERIRMEDYVTDEVGIPTLTDILHELEKPGRDPRKRLEAFCFDPNVHTLDDLCEGME 641

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  + +FG FV       GLVH+SQL+   V+  + VV     V V++L  D +R 
Sbjct: 642 LPGIVTNITNFGCFVDIGIKEKGLVHVSQLAGHFVSDPTTVVSIHQQVRVRVLSVDRERK 701

Query: 682 KIKLSMKV 689
           +I+L+MK 
Sbjct: 702 RIQLTMKE 709


>gi|191638230|ref|YP_001987396.1| Transcription accessory protein [Lactobacillus casei BL23]
 gi|190712532|emb|CAQ66538.1| Transcription accessory protein [Lactobacillus casei BL23]
 gi|327382260|gb|AEA53736.1| S1 RNA binding domain protein [Lactobacillus casei LC2W]
 gi|327385457|gb|AEA56931.1| S1 RNA binding domain protein [Lactobacillus casei BD-II]
          Length = 725

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 606 AREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           A  ++R      E  K+    +G V  V+DFGAFV      DGLVH+S+++ + V     
Sbjct: 634 AAPILRQDVLTMEDLKVGMKLEGTVRNVVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKT 693

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
           VV  GD V V +   D  R +I+L+M
Sbjct: 694 VVAIGDIVEVWIESVDLARERIQLTM 719


>gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66]
 gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66]
          Length = 295

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 87/247 (35%), Gaps = 28/247 (11%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
             +R D R    VR I+ + G +    GS+ F  G T+ +  +  G +  +  ++ +  +
Sbjct: 43  NYIRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTIN-GPKLTKSSLNEIGLS 101

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRR---------EIGHGRLARRAIHPVLPQTAQFP 420
                 + Y   P    ++ + G  ++          E        + I  ++ +     
Sbjct: 102 ----VTVDYRLSPFCK-KMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTR 156

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM------GLVKDGDDFI 474
            ++     I E DG +  A +   SLAL DA + I    + + +        VK    +I
Sbjct: 157 MSIDCYIYIIEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEVKSDCKYI 216

Query: 475 ILSDISGDEDHL-----GHMDFKVAGTDSGITAMQMDMKIGGI--SENIMVMALQQAKRG 527
            + D + DE +L       +   +    + +  +       G   +  +M    + A   
Sbjct: 217 CILDPTYDEINLENSNISELSIGLCTLRNQVVHLSAKGSAFGDIQTSKLMFSLAEAACTA 276

Query: 528 RLHILNE 534
             + + E
Sbjct: 277 ITNEMKE 283



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 34/180 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL--TVNYQERTYAVG 71
           RP+ ++TG +A   DG+   + G T VL T+   +  K   +   L  TV+Y+   +   
Sbjct: 56  RPINIKTGTVAT-CDGSAYFSIGRTRVLCTINGPKLTKSSLNEIGLSVTVDYRLSPFCKK 114

Query: 72  KIPGGYLRRESRPTE---NEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHD---LE 123
               G + + +  T+    E   S  +++ I+ +    K  +         M  D     
Sbjct: 115 MRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTR---------MSIDCYIYI 165

Query: 124 SSPHVVSMVAA----SAALMLSGLPFEGPVVGAQVDYINGQ----------YVLNPRLDE 169
                 ++ AA    S AL  + +   G      V  I              +L+P  DE
Sbjct: 166 IEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEVKSDCKYICILDPTYDE 225


>gi|158334623|ref|YP_001515795.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
 gi|158304864|gb|ABW26481.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
          Length = 289

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                S     E+ ++  G V  +  FGAF+       GL+HI ++S   V   S V+K 
Sbjct: 174 MAEQSSRIGELEIGQLVSGTVSDLKPFGAFIKL-DGLTGLLHIKEVSQNFVPNLSAVLKI 232

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           G+ +   +LD D  RG++ LS KV++   G+
Sbjct: 233 GEPIKAIVLDLDPGRGRVSLSTKVLENRPGE 263


>gi|56808640|ref|ZP_00366366.1| COG1098: Predicted RNA binding protein (contains ribosomal protein
           S1 domain) [Streptococcus pyogenes M49 591]
 gi|209559760|ref|YP_002286232.1| hypothetical protein Spy49_1252c [Streptococcus pyogenes NZ131]
 gi|209540961|gb|ACI61537.1| Putative polyribonucleotide nucleotidyltransferase [Streptococcus
           pyogenes NZ131]
          Length = 125

 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++D
Sbjct: 1   MKIGDKLHGTITGIKPYGAFVALDNGTTGLIHISEIKTGFIDDIDQLLAIGNQVLVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+   K  LSM+ + + 
Sbjct: 61  IDEYSKKPSLSMRTLAEE 78


>gi|115388025|ref|XP_001211518.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195602|gb|EAU37302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1798

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--G 641
            ++ + D    K+  S    +              +  +I  G+V KV +FGAF+      
Sbjct: 1267 RITVVDPEHNKLQMSLKDSVLDPDYKAPLTLSDLKPGQIVTGKVRKVEEFGAFIVIDRSA 1326

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     + +EGD V  K++  D ++GK+   +K 
Sbjct: 1327 NISGLCHRSEMAEKRVDDARTLFEEGDAVKAKIIKIDREQGKVSFGLKA 1375



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +V +   GA V F G+  G + +S++S   +   S   + G  V V  L  +   G++
Sbjct: 635 GTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVSVHALSVEAASGRL 694

Query: 684 KLSMKV 689
            +S K 
Sbjct: 695 AVSCKD 700



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN + +G V +V D G FV         V +S LS   + +  D  + 
Sbjct: 1201 QDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDSYLKEWKDSFQA 1260

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D +  K+++S+K  V+D +   P+
Sbjct: 1261 DQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPL 1295



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREM---IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
             G   I  S  A ++ A +      +  DV E + +  G +  +   G FV F G   G
Sbjct: 781 QRGRRLIKVSGRASLKKAVKQGLIPENFEDVQEGSDV-TGFIRNITLDGVFVEFLGGLIG 839

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LV    +  E + K S  + +   V   +   D D  +  LSM
Sbjct: 840 LVPKRLVGDENITKPSFGMTKSQIVTATVHSIDVDFRRFILSM 882


>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
           acetivorans C2A]
 gi|29336812|sp|Q8TGX5|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
 gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
          Length = 266

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 95/266 (35%), Gaps = 32/266 (12%)

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            ++  +   ++   +  +M+ K  R DGR  +  RD+  +  ++ +  GS+    G+TQ 
Sbjct: 2   KKMSEIIATLKKDYIYNLMI-KGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQV 60

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +V V L T     + DS         + +    P A+ E    G P    I   R+  R 
Sbjct: 61  LVGVKLQTGTP--FPDS---QDEGVIITNLELNPIASPEFEP-GPPREEAIEMARVVDRG 114

Query: 409 IH--------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP------ 454
           I          +     +  + + I   +   DG+   A+   +  ALM   VP      
Sbjct: 115 IRESGAIDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGL 174

Query: 455 -------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
                  + +   GI +  +       ++ D S DE+ +      +  +  G  A    M
Sbjct: 175 GEDVPLAMKEMPVGITIAKIGSK----LMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKM 230

Query: 508 KIGGISENIMVMALQQAKRGRLHILN 533
            I  ++E  +  A+  A      +  
Sbjct: 231 GISPLTEAELFEAIDLALEKAAELRG 256



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 35/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           R LKLET  I + ++G+   T G T VL  V         D QD   +  N +    A  
Sbjct: 35  RDLKLETNVIVK-AEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASP 93

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN-------ETQVI-INVMQHDLE 123
           +   G       P E  I ++R++DR IR   +   K           ++ I+V   + +
Sbjct: 94  EFEPGP------PREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHVLNDD 147

Query: 124 SSPHVVSMVAASAALMLSGLPF-------EGPVV------GAQVDYINGQYVLNPRLDED 170
            +    S +AA AALM + +P        + P+       G  +  I  + +++P LDE+
Sbjct: 148 GNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKLMVDPSLDEE 207

Query: 171 ---QGSLDLFVSGTQDAVLMVE-LEANQLSEDVVLDAIIFGHNECKPV 214
              +  L +  S +  +V  ++ +  + L+E  + +AI     +   +
Sbjct: 208 AVCETKLTIV-SSSDGSVAGMQKMGISPLTEAELFEAIDLALEKAAEL 254


>gi|16330820|ref|NP_441548.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
 gi|2500386|sp|P74142|RS1B_SYNY3 RecName: Full=30S ribosomal protein S1 homolog B
 gi|1653313|dbj|BAA18228.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
          Length = 305

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           IY+G+V K+  +G FV   G   GL+H+SQ+S  RV   + +   G  + V + + D+ +
Sbjct: 196 IYEGKVAKIQPYGVFVEIEG-VTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYK 254

Query: 681 GKIKLSMKVVDQNTGK 696
            +I LS ++++   G+
Sbjct: 255 NRISLSTRILETYPGE 270


>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
 gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
          Length = 237

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 18/188 (9%)

Query: 310 KKVRMDGRDS--ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
            ++  D      + +R++  +   L R  GS ++ +G T  ++   LG  E +    S+ 
Sbjct: 2   NEIATDKGKVPNDKLREMRCEFNPLSRCDGSVMYSQGST-VVIAAVLGPVEVKTQSLSID 60

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G+      +  N+ P A       G P  +E     + +  +   +   +     + +  
Sbjct: 61  GSY-----LECNYRPKA-------GLPQVKERIRESVIQDVLELAVLGESYPRSKMSVQI 108

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           +  E  GS     V  + LA++  G+P+    A +   + +DG+    + D    E    
Sbjct: 109 QELEDRGSIDACAVNAACLAMIIGGLPMKYSFAAVQCIINEDGE---YILDPDQRETLHQ 165

Query: 488 HMDFKVAG 495
              F  A 
Sbjct: 166 RASFTFAF 173



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 32/193 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R ++ E   ++R  DG+V+ + G TVV+A V+    +K      D   L  NY+ +    
Sbjct: 17  REMRCEFNPLSR-CDGSVMYSQGSTVVIAAVLGPVEVKTQSLSIDGSYLECNYRPKA--- 72

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNE-----TQVIINVMQHDLESS 125
                        P   E +   +I   +  L              Q+     + +   S
Sbjct: 73  -----------GLPQVKERIRESVIQDVLE-LAVLGESYPRSKMSVQI----QELEDRGS 116

Query: 126 PHVVSMVAASAALMLSGLPFEGPVVGAQ-VDYINGQYVLNPRLDE---DQGSLDLFVSGT 181
               ++ AA  A+++ GLP +      Q +   +G+Y+L+P   E    + S        
Sbjct: 117 IDACAVNAACLAMIIGGLPMKYSFAAVQCIINEDGEYILDPDQRETLHQRASFTFAFDSL 176

Query: 182 QDAVLMVELEANQ 194
           +  +L+V+ + + 
Sbjct: 177 EGDLLLVQTKGSF 189


>gi|241950924|ref|XP_002418184.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
 gi|223641523|emb|CAX43484.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
          Length = 1715

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN   +G +    +           I    D  ++  I++G V    +FG FV   G
Sbjct: 1203 GKIVNCKQEGRI--LMTLKESEVNGDLKIMKTFDDLQIGDIFEGTVTSTTEFGVFVKLDG 1260

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
                 GL H S++S   V     +   GD V VK+L  D   + + L MK 
Sbjct: 1261 TVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDPVKRQLSLGMKA 1311



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           K +  G  V F G     +  +++S   V   S  +K G  V V++LD + ++ ++ +++
Sbjct: 595 KFVPNGCIVSFFGNLRAFLPKTEISETFVEDASSYLKVGQIVKVRILDINKEQKRLVVTL 654

Query: 688 KV 689
           K 
Sbjct: 655 KQ 656



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 553  VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE---IEAAREM 609
            +  ++I P     +  +       I +    K+ I +   VK+    L     +  ARE 
Sbjct: 993  MVWVSISPSIKGRISMLDLTEDGSIFQDIDNKLPIGNAINVKVKQVDLQHQILVLTAREN 1052

Query: 610  IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
                 +  + ++IY  +++K+      V           ++    +   K   V    D 
Sbjct: 1053 FIEKFEDVKQDEIYPARIIKIKPNHVLVELGNNVIASSFLTDALDDYSEKLDHVFNVNDY 1112

Query: 670  VWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
            V  K+LD D    +I +S++     + K I
Sbjct: 1113 VSAKVLDIDSINKRISVSLRTNKPTSDKVI 1142



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            ++ KG V  + + G +V    +   LV +S LS   +    +  K    V  K+++    
Sbjct: 1152 QVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQE 1211

Query: 681  GKIKLSMKV 689
            G+I +++K 
Sbjct: 1212 GRILMTLKE 1220


>gi|323490580|ref|ZP_08095786.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
 gi|323395846|gb|EGA88686.1| hypothetical protein GPDM_14501 [Planococcus donghaensis MPA1U2]
          Length = 721

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAF+     +DGLVHIS+L    V    +VV  GD V   +   + D+G
Sbjct: 648 VQGTVRNVVDFGAFIDIGVKQDGLVHISKLKKGFVKHPLEVVAVGDIVTAWVEKVEKDKG 707

Query: 682 KIKLSMKVVDQNT 694
           +I L+M    + T
Sbjct: 708 RIALTMLQPKEQT 720


>gi|116753730|ref|YP_842848.1| translation initiation factor IF-2 subunit alpha [Methanosaeta
           thermophila PT]
 gi|116665181|gb|ABK14208.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanosaeta thermophila PT]
          Length = 257

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   +    V +V+DFGAFV      D  G +HIS++++  +    D V+EG  +  K+
Sbjct: 7   PEPGDLVVCTVDQVLDFGAFVTLDEYVDKKGFIHISEVASGWIKYIRDHVREGQKIVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L+ D  +  I LS+K V+++  + 
Sbjct: 67  LNVDKSKHHIDLSLKDVNEHQRRE 90


>gi|303323507|ref|XP_003071745.1| 3' exoribonuclease family, domain 1 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240111447|gb|EER29600.1| 3' exoribonuclease family, domain 1 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320035116|gb|EFW17058.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Coccidioides posadasii str. Silveira]
          Length = 298

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 14/166 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R + AQ+     + GSS    G+T  +  V  G  E  +  ++  G    
Sbjct: 15  RLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVH-GPAEG-KRSETAGGGGGA 72

Query: 373 DFMMHYNFLPCATGEVSRM-----------GAPSRR-EIGHGRLARRAIHPVLPQTAQFP 420
              +  N    A  +  +            G   R+         R A  P L       
Sbjct: 73  VVSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPH 132

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGL 466
            T+ +   +  SDGS   A +   +LAL+DAG+P+   +    +G+
Sbjct: 133 STISLHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGM 178



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 16/144 (11%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES---- 82
           S G+     G TVV+  V      K  +               +    G   +++S    
Sbjct: 37  SSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAVVSVVVNIAGFAGVDRKKKSMMAG 96

Query: 83  ------RPTENE--ILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMV 132
                    + +    +S  +  + +P         +   + ++V+  D         + 
Sbjct: 97  GGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHSTISLHVSVLSSDGSIFA--ACIN 154

Query: 133 AASAALMLSGLPFEGPVVGAQVDY 156
           A + AL+ +G+P  G +    V  
Sbjct: 155 ACTLALVDAGIPMPGLLCACTVGM 178


>gi|254458581|ref|ZP_05072006.1| RNA binding S1 [Campylobacterales bacterium GD 1]
 gi|207084889|gb|EDZ62176.1| RNA binding S1 [Campylobacterales bacterium GD 1]
          Length = 552

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +             +  G V  + DFGAFV   G+ +GL+H   +S ++  K  DV+K G
Sbjct: 359 KPFDEFVRNYNEGDVVTGTVTSLTDFGAFVRV-GSVEGLLHNQDISWDKNVKCKDVLKSG 417

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           + V VK+   + +  KI L+ K + ++ 
Sbjct: 418 EEVEVKIAKINTEDQKISLNRKTLLESP 445



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           G +V+   ++    KV+  ++  V        E    ++    I  + E + I +G + K
Sbjct: 151 GDEVVGRKIKAQVVKVDAAENSIVVSRRKLFNEERKKKK--EIIDQLMEDDVIVEGTIKK 208

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           +  +G FV   G  DGLVH +++S +     S + K+GD V VK + +D   + + LS+K
Sbjct: 209 ITSYGMFVDV-GGVDGLVHYNEISYKGPVNPSKLYKDGDVVTVKAISYDKDKRHLSLSIK 267

Query: 689 VVDQNTGKPI 698
            V  +    +
Sbjct: 268 AVQSDPWAEV 277



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           VE   AK+N +D        + L         I       ++N I KG +  + +FG FV
Sbjct: 420 VEVKIAKINTEDQKISLNRKTLLES------PIDKFATTHKLNSIVKGTIRDIKEFGVFV 473

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
                 D L+    L+        + +  G  +   +   D  R +I+LS+K +D
Sbjct: 474 SLEDGVDALIRDEDLAPL----VKEELVAGQEIEAAIAVIDTRRDRIRLSVKKLD 524


>gi|166363378|ref|YP_001655651.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
 gi|166085751|dbj|BAG00459.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
          Length = 293

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 20/184 (10%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +    +  K  +L +       ++     L  F PR  +  I  + + ++IG     
Sbjct: 103 WENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHL--IEKNDLDSLIG----- 155

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                  T   + ID +    + S        A   +        V K+  G VVK+  +
Sbjct: 156 ----QLLTATFIQIDQENNKLVLSQREIARANAISQLA-------VGKLLSGTVVKLQPY 204

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G FV  CG   GL+H  Q++           K G  + V + + D+ + +I LS K+++ 
Sbjct: 205 GVFVD-CGGVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVVAEIDEYKNRISLSTKILEA 263

Query: 693 NTGK 696
           + G+
Sbjct: 264 HPGE 267


>gi|24378974|ref|NP_720929.1| hypothetical protein SMU.489 [Streptococcus mutans UA159]
 gi|24376863|gb|AAN58235.1|AE014894_12 putative polyribonucleotide nucleotidyltransferase (general stress
           protein 13) [Streptococcus mutans UA159]
          Length = 130

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + ++    KG++  +  +GAFV       GL+HIS++ T  +      +  G  V V++
Sbjct: 1   MMMKIGDKLKGKITGIKPYGAFVQLENGSIGLIHISEIKTGYIDNIYQTLSVGQEVLVQV 60

Query: 675 LDFDD-RGKIKLSMKVVDQN 693
           +D+D+   K  LS++ +++ 
Sbjct: 61  VDYDEYSQKASLSLRTLEEE 80


>gi|257080730|ref|ZP_05575091.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|256988760|gb|EEU76062.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
          Length = 122

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  +  G +  +  +GAFV       GL+H+S++          ++  G  V V++
Sbjct: 1   MKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQKVTVQV 60

Query: 675 LDFDD-RGKIKLSMKVVD 691
           +D D+   KI LS++ ++
Sbjct: 61  IDVDEYSQKISLSLRTLE 78


>gi|290581008|ref|YP_003485400.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           mutans NN2025]
 gi|254997907|dbj|BAH88508.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           mutans NN2025]
          Length = 128

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +      +  G  V V+++D
Sbjct: 1   MKIGDKLKGKITGIKPYGAFVQLENGSIGLIHISEIKTGYIDNIYQTLSVGQEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+   K  LS++ +++ 
Sbjct: 61  YDEYSQKASLSLRTLEEE 78


>gi|71042114|pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From
           Pyrococcus Abyssi
          Length = 274

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  +     V ++ ++GAF+       ++  +HIS++++  V    D +KEG  V  K+
Sbjct: 8   PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKV 67

Query: 675 LDFDDR-GKIKLSMKVVDQNTGK 696
           +  D R G I LS++ V Q   K
Sbjct: 68  IRVDPRKGHIDLSLRRVTQQQRK 90


>gi|238019643|ref|ZP_04600069.1| hypothetical protein VEIDISOL_01517 [Veillonella dispar ATCC 17748]
 gi|237863684|gb|EEP64974.1| hypothetical protein VEIDISOL_01517 [Veillonella dispar ATCC 17748]
          Length = 133

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I  G V  +  FG FV     + GLVHIS+++   V   + V+K  D V VK+L  
Sbjct: 4   EVGNIIDGTVSGITKFGVFVDLGEKQTGLVHISEVAHGYVEDINTVLKVEDPVKVKVLSI 63

Query: 678 DDRGKIKLSMKVVDQNT 694
            +  KI LS++      
Sbjct: 64  -EGNKIGLSIRQTQPKE 79


>gi|15675497|ref|NP_269671.1| hypothetical protein SPy_1619 [Streptococcus pyogenes M1 GAS]
 gi|19746545|ref|NP_607681.1| hypothetical protein spyM18_1628 [Streptococcus pyogenes MGAS8232]
 gi|21910900|ref|NP_665168.1| hypothetical protein SpyM3_1364 [Streptococcus pyogenes MGAS315]
 gi|28895410|ref|NP_801760.1| hypothetical protein SPs0498 [Streptococcus pyogenes SSI-1]
 gi|50914722|ref|YP_060694.1| hypothetical protein M6_Spy1376 [Streptococcus pyogenes MGAS10394]
 gi|71904033|ref|YP_280836.1| hypothetical protein M28_Spy1371 [Streptococcus pyogenes MGAS6180]
 gi|71911143|ref|YP_282693.1| hypothetical protein M5005_Spy_1330 [Streptococcus pyogenes
           MGAS5005]
 gi|139473332|ref|YP_001128047.1| hypothetical protein SpyM50461 [Streptococcus pyogenes str.
           Manfredo]
 gi|13622693|gb|AAK34392.1| putative polyribonucleotide nucleotidyltransferase (general stress
           protein) [Streptococcus pyogenes M1 GAS]
 gi|19748756|gb|AAL98180.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           pyogenes MGAS8232]
 gi|21905106|gb|AAM79971.1| putative polyribonucleotide nucleotidyltransferase [Streptococcus
           pyogenes MGAS315]
 gi|28810656|dbj|BAC63593.1| putative polyribonucleotide nucleotidyltransferase (general stress
           protein) [Streptococcus pyogenes SSI-1]
 gi|50903796|gb|AAT87511.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS10394]
 gi|71803128|gb|AAX72481.1| s1-type RNA-binding domain [Streptococcus pyogenes MGAS6180]
 gi|71853925|gb|AAZ51948.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS5005]
 gi|134271578|emb|CAM29803.1| putative S1 RNA binding domain protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 125

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++D
Sbjct: 1   MKIGDKLHGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDDIDQLLAIGNQVLVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+   K  LSM+ + + 
Sbjct: 61  IDEYSKKPSLSMRTLAEE 78


>gi|308063837|gb|ADO05724.1| 30S ribosomal protein S1 [Helicobacter pylori Sat464]
          Length = 552

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISLSAKHL 442



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             +++D +      S         +  +    ++ E  +   G V ++  FG FV     
Sbjct: 163 CIIHVDKENHSINISRKRFFEVNDKRQLEVSKELLEATEPVLGVVRQITPFGIFVEV-KG 221

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +GLVH S++S +         KEGD V VK + +D ++ ++ LS+K   ++  + I
Sbjct: 222 VEGLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|228473067|ref|ZP_04057824.1| S1 RNA binding domain protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275649|gb|EEK14426.1| S1 RNA binding domain protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 723

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G V  +  FG FV       GLVHISQL    V++ S+VVK  + V VK+ + D
Sbjct: 652 VGMILPGIVNNITAFGCFVDIGIKESGLVHISQLKDGYVSEVSEVVKLHEQVQVKVTEVD 711

Query: 679 -DRGKIKLSM 687
             R +I LSM
Sbjct: 712 TARKRISLSM 721


>gi|188527836|ref|YP_001910523.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470]
 gi|188144076|gb|ACD48493.1| 30S ribosomal protein S1 [Helicobacter pylori Shi470]
          Length = 552

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLTDFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDRKISLSAKHL 442



 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             +++D +      S         +  +    ++ E  +   G V ++  FG FV     
Sbjct: 163 CIIHVDKENHSINISRKRFFEVNDKRQLEVSKELLEATEPVLGVVRQITPFGIFVEV-KG 221

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            +GLVH S++S +         KEGD V VK + +D ++ ++ LS+K   ++  + I
Sbjct: 222 VEGLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSLSIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|303282543|ref|XP_003060563.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458034|gb|EEH55332.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 343

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 26/188 (13%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVLSESR-------LQLGEFTPRVEIMAIPPDQIRNVIG 568
            +  A  + +  +       ++VLS +R         L  F P+   +AI      ++IG
Sbjct: 112 QLEAAWNRCREMQAADEAVSAEVLSVNRGGLLVEVEHLRGFVPQS-HIAIRTPNREDLIG 170

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
               V           + +D+D    + S+ LA    + E          V  + KG V 
Sbjct: 171 QKVPV---------KFLEVDEDKNRLVMSNRLATDVVSGEG-------LGVGDVCKGIVQ 214

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V  +GAFV   G   GL+HISQ+S +R+    +V+  GD + V +L  D +R ++ LS 
Sbjct: 215 AVKPYGAFVDV-GGVSGLLHISQISHDRIVAVENVLSPGDELKVLILSKDAERSRLSLST 273

Query: 688 KVVDQNTG 695
           K ++ + G
Sbjct: 274 KKLEPSPG 281


>gi|317177805|dbj|BAJ55594.1| 30S ribosomal protein S1 [Helicobacter pylori F16]
          Length = 552

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
            E     ++ID        S                    +V  + +G+V  + DFGAF+
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNR----PFDVFESKHQVGDVLEGKVATLADFGAFL 389

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           +  G  DGL+H      ++  K  D  K GD + VK+L  + +  KI LS K +
Sbjct: 390 NL-GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHL 442



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           IG   K     V++    +NI      ++      E+           ++ E  +   G 
Sbjct: 156 IGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK---------ELLEATEPVLGV 206

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           V ++  FG FV      +GLVH S++S +         KEGD V VK + +D ++ ++ L
Sbjct: 207 VCQITPFGIFVEV-KGVEGLVHYSEISHKGPVNPEKYYKEGDEVCVKAIAYDEEKRRLSL 265

Query: 686 SMKVVDQNTGKPI 698
           S+K   ++  + I
Sbjct: 266 SIKATIEDPWEEI 278



 Score = 41.8 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    + + + +G+VV + DFG F++     D L+    L+  +     D +K G 
Sbjct: 446 PTEEFAQKHKTDSVIQGKVVSIKDFGVFIN-ADGIDVLIKNEDLNPLK----KDEIKIGQ 500

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +   ++  +    K++ S+  +++   K 
Sbjct: 501 EITCVVVAIEKSNNKVRASVHRLERKKEKE 530


>gi|307297899|ref|ZP_07577703.1| Tex-like protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915985|gb|EFN46368.1| Tex-like protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 717

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGL+H S++   RV    +V+  G  V V++L+ D  R 
Sbjct: 646 LEGTVRNVVDFGAFVDIGVKQDGLIHKSKMG-RRVRDPLEVLSVGQIVKVRVLEVDTKRM 704

Query: 682 KIKLSM 687
           +I L +
Sbjct: 705 RIGLEL 710


>gi|195075790|ref|XP_001997186.1| GH23512 [Drosophila grimshawi]
 gi|193892030|gb|EDV90896.1| GH23512 [Drosophila grimshawi]
          Length = 103

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDV-VKE 666
           M++      E   IY  ++ ++ D G  V         L+H SQL   ++A  S + ++ 
Sbjct: 1   MLKERVPQLEFGGIYTAKITELRDTGVMVILYPSMPPALLHNSQLDQRKIAHPSALGLEV 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           G  + VK    D   G ++LS KV+ 
Sbjct: 61  GQELQVKYFGRDPVSGFMRLSRKVLQ 86


>gi|315221995|ref|ZP_07863906.1| putative general stress protein 13 [Streptococcus anginosus F0211]
 gi|315188961|gb|EFU22665.1| putative general stress protein 13 [Streptococcus anginosus F0211]
          Length = 123

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++ +  KG++  +  +GAFV       GL+HIS++ T  +    +++   D V V+++D
Sbjct: 1   MKIGEKLKGRITGIQPYGAFVELETGAMGLIHISEIRTGYIENIHEILHVDDQVLVQVMD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKASLSMRTLEEE 78


>gi|224417933|ref|ZP_03655939.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491]
          Length = 451

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 580 QTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +TG +++++  +   K     ++  +   +         +   I KG V  + DFGAF+ 
Sbjct: 334 KTGQEIDVEVIEIDTKERRLRVSLKKLLDKPFTQFVKKHKEGDILKGSVATLTDFGAFIK 393

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
                DGL+H       +  K  D++K GD + VK+   D ++ +I L+ K +
Sbjct: 394 L-DGIDGLLHNEDAYWNKNEKCKDLMKIGDEIEVKIAKIDREKERISLTRKGI 445



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++     V  ++D  V           + ++ +       E     +G + K+  FG FV
Sbjct: 163 IKACIINVKPEEDSVVISRKRLFEIENSVKKDVIENLLKQEGP--LEGTIKKITSFGMFV 220

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  +GLVH +++S +     S + KEGD V VK+L +D D+ ++ LS+K   ++  K
Sbjct: 221 DVEG-VEGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKRLALSIKDTIEDPWK 279

Query: 697 PI 698
            +
Sbjct: 280 EV 281


>gi|322379236|ref|ZP_08053627.1| 30S ribosomal protein S1 [Helicobacter suis HS1]
 gi|322379691|ref|ZP_08054004.1| 30S ribosomal protein S1 [Helicobacter suis HS5]
 gi|321147840|gb|EFX42427.1| 30S ribosomal protein S1 [Helicobacter suis HS5]
 gi|321148376|gb|EFX42885.1| 30S ribosomal protein S1 [Helicobacter suis HS1]
          Length = 563

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 83/261 (31%), Gaps = 42/261 (16%)

Query: 461 GIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
            I  G+VK    F    ++ G E   H   +  + +   +        +++  +S +   
Sbjct: 213 AIYTGIVKSVTSFGAFVEVEGVEGLVHYTEITHRGSTNPAKYFKEGDAVQVRALSYD--- 269

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKV 573
                    +  +L  +   +     ++         + +    I +      IG   + 
Sbjct: 270 -------EKKRRLLLSVKATIENPWNEIQTKLKVGYAIKVVVSNIESYGVFVDIGNDIEG 322

Query: 574 IRGIVEQTGAK-------------------VNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              I E +  K                   + ID        S          +      
Sbjct: 323 FLHISEISWNKDVKHPQDYLSLNQEIDVKIIEIDSKNRRLRVSLKQLSD----KPFNEFV 378

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               V  + +G+V  + DFGAF++  G  DGL+H      E+  K  +  K GD +  K+
Sbjct: 379 SKYRVGDLVEGKVATLTDFGAFINL-GGVDGLLHNKDAFWEQDKKCKEHFKIGDVIQTKI 437

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  + +  KI L MK    + 
Sbjct: 438 LRINKEEEKISLEMKFAQPSP 458



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
             + I+ +      S        ++        + E   IY G V  V  FGAFV   G 
Sbjct: 175 CIIAINPENGSISVSRKRFFDVYSKYQHEQSQKLVESGAIYTGIVKSVTSFGAFVEVEG- 233

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
            +GLVH ++++       +   KEGD V V+ L +D++  ++ LS+K   +N    I
Sbjct: 234 VEGLVHYTEITHRGSTNPAKYFKEGDAVQVRALSYDEKKRRLLLSVKATIENPWNEI 290


>gi|313141474|ref|ZP_07803667.1| 30s ribosomal protein s1 [Helicobacter canadensis MIT 98-5491]
 gi|313130505|gb|EFR48122.1| 30s ribosomal protein s1 [Helicobacter canadensis MIT 98-5491]
          Length = 453

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 580 QTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +TG +++++  +   K     ++  +   +         +   I KG V  + DFGAF+ 
Sbjct: 336 KTGQEIDVEVIEIDTKERRLRVSLKKLLDKPFTQFVKKHKEGDILKGSVATLTDFGAFIK 395

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
                DGL+H       +  K  D++K GD + VK+   D ++ +I L+ K +
Sbjct: 396 L-DGIDGLLHNEDAYWNKNEKCKDLMKIGDEIEVKIAKIDREKERISLTRKGI 447



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++     V  ++D  V           + ++ +       E     +G + K+  FG FV
Sbjct: 165 IKACIINVKPEEDSVVISRKRLFEIENSVKKDVIENLLKQEGP--LEGTIKKITSFGMFV 222

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  +GLVH +++S +     S + KEGD V VK+L +D D+ ++ LS+K   ++  K
Sbjct: 223 DVEG-VEGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKRLALSIKDTIEDPWK 281

Query: 697 PI 698
            +
Sbjct: 282 EV 283


>gi|242398565|ref|YP_002993989.1| Translation initiation factor 2 subunit alpha [Thermococcus
           sibiricus MM 739]
 gi|242264958|gb|ACS89640.1| Translation initiation factor 2 subunit alpha [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
            +M R   + PE  +     V  + ++GAF+       +DG +HIS+++   V    D +
Sbjct: 2   MKMPRRAREFPEEGEFVVATVKDIHNYGAFLSLDEYPGKDGFMHISEVAPTFVRNIRDYL 61

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           KEG  +  K++  D  +G I LS+K V Q   K
Sbjct: 62  KEGQKIVAKVIRVDPTKGHIDLSLKRVKQQERK 94


>gi|113476121|ref|YP_722182.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
 gi|110167169|gb|ABG51709.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
          Length = 304

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 587 IDDDGTVKIASSSLAE----IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ID   TV        +    +        +      V ++ +G+VV V  FG FV   G 
Sbjct: 164 IDQVLTVNFLELDQEKKKIVMSQRLATQSAGFSKLAVGQLLEGKVVGVKPFGVFVDLEG- 222

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
             GL+HI+Q+S +RV   S +  +G+ V   ++D D+ R +I LS KV++   G+
Sbjct: 223 LTGLLHITQVSQKRVDSLSTIFSQGNLVKAMIVDLDEGRKRISLSTKVLENYPGE 277


>gi|253827272|ref|ZP_04870157.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491]
 gi|253510678|gb|EES89337.1| 30S ribosomal protein S1 [Helicobacter canadensis MIT 98-5491]
          Length = 558

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 580 QTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +TG +++++  +   K     ++  +   +         +   I KG V  + DFGAF+ 
Sbjct: 334 KTGQEIDVEVIEIDTKERRLRVSLKKLLDKPFTQFVKKHKEGDILKGSVATLTDFGAFIK 393

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
                DGL+H       +  K  D++K GD + VK+   D ++ +I L+ K +
Sbjct: 394 L-DGIDGLLHNEDAYWNKNEKCKDLMKIGDEIEVKIAKIDREKERISLTRKGI 445



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++     V  ++D  V           + ++ +       E     +G + K+  FG FV
Sbjct: 163 IKACIINVKPEEDSVVISRKRLFEIENSVKKDVIENLLKQEGP--LEGTIKKITSFGMFV 220

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  +GLVH +++S +     S + KEGD V VK+L +D D+ ++ LS+K   ++  K
Sbjct: 221 DVEG-VEGLVHYTEISHKGPVNPSKLYKEGDKVSVKILSYDKDKKRLALSIKDTIEDPWK 279

Query: 697 PI 698
            +
Sbjct: 280 EV 281



 Score = 41.8 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMI-------RSITDVPEVNKIYKGQVVKVM 631
           E+    + I D+  VKIA     +   +                    ++  +G V  + 
Sbjct: 412 EKCKDLMKIGDEIEVKIAKIDREKERISLTRKGIIASPVEEFAKKHFEDEEVQGVVRDIK 471

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
           DFG F+      D L+    L   +     + +K GD++   +   D +  KI++S++ +
Sbjct: 472 DFGVFIKLDEDMDALIRNEDLFPIK----KEEIKIGDSIKGVISLIDKQNNKIRVSIRRL 527

Query: 691 DQNTGK 696
           ++   K
Sbjct: 528 EKQKEK 533


>gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
           II]
 gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum]
 gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
           II]
 gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum]
          Length = 303

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 88/263 (33%), Gaps = 37/263 (14%)

Query: 305 TVMLDKK--VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
            ++ + K  +R D R  E +R I+ + G+++   GS+ F  G+T+ +     G    +Q 
Sbjct: 37  NIISENKVLIRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCG-IYGPNLCKQN 95

Query: 363 V--DSLSGTQRNDFMMHYNFLPCATGEVSRMGAP-------SRREIGHGRLARRAIHPVL 413
              D LS        + Y                          E     L  + I  V+
Sbjct: 96  PIEDGLS------VSVEYTIGSFCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVI 149

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM--------- 464
                   ++     I + DGS+  A +  + L+L +A + I    +   +         
Sbjct: 150 CHEKYKRSSIDCYFYIIDDDGSAFSAAISAACLSLCNAKIEIIGLFSATNIIAVNSNSLF 209

Query: 465 ---GLVKDGDDFIILSDISGDEDHLGH------MDFKVAGTDSGITAMQMDMKIGGISEN 515
              G  +  D++ ++ D + +E           ++  +    + +  +  +       + 
Sbjct: 210 NHDGKKQTEDEYSMILDPTYNEISYLGASNYSTLEIGLCTIRNQVVYLSANGDFFKDPKR 269

Query: 516 IMVMALQQAKRGRLHILNEMSKV 538
           I       A+     I++E+   
Sbjct: 270 I-EEGFSLAEASCSAIVDEIKDH 291



 Score = 44.1 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDR--SLKDGQDFFPLTVNY 63
           RP+ + TG I   +DG+   + G T VL  +           +D   ++V Y
Sbjct: 57  RPITIRTGVI-ENADGSAYFSIGNTKVLCGIYGPNLCKQNPIEDGLSVSVEY 107


>gi|291301239|ref|YP_003512517.1| RNA binding S1 domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570459|gb|ADD43424.1| RNA binding S1 domain protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 507

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  R       + +I  G+V K++ FGAFV      +GLVHIS+L+   V     VV+ G
Sbjct: 290 DPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVEVPEQVVEVG 349

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQ 692
               VK++D D DR +I LS+K   +
Sbjct: 350 SDAMVKVIDIDLDRRRISLSLKQASE 375



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVH 638
           +  AK+   D     +  S  + +E  +  +R+   +     ++ KG V  +++FGAFV 
Sbjct: 176 ELEAKIIELDKNRNNVVLSRRSWLEQTQSEVRTEFLNKLAKGQVRKGVVSSIVNFGAFVD 235

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             G  DGLVH+S+LS + +    +VV+ G  V V++L+ D DR ++ LS+K   ++  +
Sbjct: 236 L-GGVDGLVHVSELSWKHIDHPGEVVEVGKEVEVEVLEVDMDRERVSLSLKATQEDPWR 293



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            ++G KV +DD G+          + AA +      +      I +G VVKV      + 
Sbjct: 13  AESGDKVVVDDLGS-------EEALLAAIDETIKYFND---GDIVEGTVVKVDRDEVLLD 62

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
                +G++   +LS +     ++VV  GD V   +L   D  G++ LS K   
Sbjct: 63  IGYKTEGVIPSRELSIKHDVDPAEVVSTGDQVEALVLQKEDKEGRLILSKKRAQ 116


>gi|218671814|ref|ZP_03521483.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli GR56]
          Length = 256

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVK 629
             +  ID+   +      +AE+E      R            +     +   + +G V  
Sbjct: 87  DPRQFIDEKFGLPTVRDIIAELEKPGRDPRPSFKTATFAEGVNEISDLKPGMVLEGTVTN 146

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R +I LSM+
Sbjct: 147 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMR 206

Query: 689 VVD 691
             D
Sbjct: 207 RDD 209


>gi|212723248|ref|NP_001131522.1| hypothetical protein LOC100192861 [Zea mays]
          Length = 541

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V+ +  FG FV      +GLVHIS++S   V   S +   G  V V+LL+ + +  
Sbjct: 151 FTGKVMSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDISSLFTVGQEVSVRLLEANKETK 210

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 211 RISLTMREGD 220


>gi|30794378|ref|NP_082550.1| exosome complex component MTR3 [Mus musculus]
 gi|81875189|sp|Q8BTW3|EXOS6_MOUSE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog
 gi|26353554|dbj|BAC40407.1| unnamed protein product [Mus musculus]
 gi|109734233|gb|AAI16986.1| Exosome component 6 [Mus musculus]
 gi|111599953|gb|AAI19083.1| Exosome component 6 [Mus musculus]
          Length = 273

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 68/198 (34%), Gaps = 11/198 (5%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +       RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E        
Sbjct: 23  EDDETPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGSGP 81

Query: 369 TQ---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                      R   +  +   P +             +   G   + A+ P +      
Sbjct: 82  AGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYP 141

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              L + + + E  G +  A +  ++LAL DAGV +   V G  + L   G     L D 
Sbjct: 142 RAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTP-GPSPTWLLDP 200

Query: 480 SGDEDHLGHMDFKVAGTD 497
           +  E+        VA   
Sbjct: 201 TRLEEEHSAAGLTVALMP 218


>gi|159570408|emb|CAM19183.2| zinc finger, CCHC domain containing 17 [Mus musculus]
 gi|159574246|emb|CAM25094.2| zinc finger, CCHC domain containing 17 [Mus musculus]
          Length = 199

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 3/56 (5%)

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           LVH + +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 1   LVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 56


>gi|154309384|ref|XP_001554026.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
 gi|150852410|gb|EDN27602.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
          Length = 1678

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            KV + D+    +  S    +     +     +  +VN++  G++ KV DFG F+   G  
Sbjct: 1278 KVTVVDEVLNHVQLSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSA 1337

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     +  EGD V   +L  D ++ +I  SMK 
Sbjct: 1338 NVSGLCHQSEMAEKRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKA 1386



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 569  MGGKVIRGIVEQTGAKVNIDDDGTV--KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
                    IV      +++ +        AS  +    A ++   S     +VN I +G 
Sbjct: 1172 PSKYSKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGF 1231

Query: 627  VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
            V  V D G FV+  G     V IS LS   +       +    V  K+   D+    ++L
Sbjct: 1232 VKHVADKGLFVNLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQL 1291

Query: 686  SMK 688
            S+K
Sbjct: 1292 SLK 1294



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +++ GA V F G   G + +S++S   +   +   K G  V V +L  D    K+
Sbjct: 651 GTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAKKL 710

Query: 684 KLSMKV 689
            +S K 
Sbjct: 711 TVSCKD 716



 Score = 46.4 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVK--VMDFGA---FVHFCGARDGLVHISQLSTERVAKTSD 662
           E      +  ++ ++ KG+V K  V D G     V+      GLV  + L+  ++     
Sbjct: 540 EQPYLRIEDLKIGEVVKGKVEKLIVNDKGVGGLLVNLAENISGLVPETHLADIQLLHPEK 599

Query: 663 VVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
             KEG  V  ++L  D   + I+L++K    N+  P
Sbjct: 600 KFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESP 635



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A  + +  + D  +  K   G V  +     FV F G   GL+  +++  + +       
Sbjct: 815 AQNKTLLRMFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKIPEKNLRLPDFGF 874

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVV--DQNTGKPIV 699
           K+  T+ VK+L  D  + +  LSM     D+ + +P+ 
Sbjct: 875 KKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLA 912



 Score = 41.1 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
             I  G+V +V +    V    +    ++++ L  +          + D V V + D D  
Sbjct: 1132 MIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYSKNDIVRVCVTDIDVP 1191

Query: 680  RGKIKLSMKV 689
              +++LS + 
Sbjct: 1192 NKRVRLSTRA 1201


>gi|57167925|ref|ZP_00367065.1| ribosomal protein S1 VC1915 , putative [Campylobacter coli RM2228]
 gi|57021047|gb|EAL57711.1| ribosomal protein S1 VC1915 , putative [Campylobacter coli RM2228]
          Length = 556

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV+ ++   +     +L +    R+ + +     E   + +G V K+  +G FV   G 
Sbjct: 168 IKVDKEEQSIIVSRKKTLDDERKKRKELINNIAQQEG--LIEGVVKKITTYGMFVDV-GG 224

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            DGLVH S++S +     S + KEGD V VK++ +D DR  + LS+K    +    I
Sbjct: 225 VDGLVHYSEISYKGPVNPSILYKEGDKVPVKVVKYDKDRKHLSLSIKAALPDPWGEI 281



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 32/195 (16%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 261 KDRKHLSLSIKAALPDPWGEIKDSLEVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 320

Query: 581 TGAK--------------VNID------DDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +  K              ++++      D+  ++++  +L       +         ++ 
Sbjct: 321 SWDKNIKNPKDYISKGQEIDVEVIEINSDERRLRVSLRNLLS-----KPFDEFMKNHKIG 375

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G+V     FGAFV   G+ +GL+H    S +R  K  D    GD + VK++  D+ 
Sbjct: 376 DVIEGEVTSTTSFGAFVKI-GSVEGLLHNEDASWDRNEKCKDKFNNGDIIKVKIIKIDEE 434

Query: 681 G-KIKLSMKVVDQNT 694
           G KI LS+K + ++ 
Sbjct: 435 GQKISLSIKELSESP 449



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++      +V  I KG++  + DFG FV      D L+H   +S   +      +K GD
Sbjct: 449 PVQEYAKNHKVGDIVKGKIRDIKDFGVFVELNKNVDALIHKEDISASTLEN----LKIGD 504

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   +   D++  +I+LS+K +
Sbjct: 505 EIEAAIAFIDEKKNRIRLSVKNL 527


>gi|223933143|ref|ZP_03625135.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
 gi|223898204|gb|EEF64573.1| RNA binding S1 domain protein [Streptococcus suis 89/1591]
          Length = 713

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVK 629
           +  T  K+ +  +    I +  L      R+   +     +V  +         +G V  
Sbjct: 579 IADTAEKIGVGQETLKDIVADLLKPGRDLRDDFEAPVLRQDVLDVKDLVVGQELQGTVRN 638

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVA---------KTSDVVKEGDTVWVKLLDFD-D 679
           ++DFGAFV      DGLVHIS++                 S+V+  G+ V V +++ D  
Sbjct: 639 IVDFGAFVDIGVHEDGLVHISRMVKRNRDKNGRQQALPHPSEVLAVGEIVTVWVVEVDIK 698

Query: 680 RGKIKLSM 687
           R +I LS+
Sbjct: 699 RNRIGLSL 706


>gi|305432049|ref|ZP_07401216.1| 30S ribosomal protein S1 [Campylobacter coli JV20]
 gi|304445133|gb|EFM37779.1| 30S ribosomal protein S1 [Campylobacter coli JV20]
          Length = 557

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            KV+ ++   +     +L +    R+ + +     E   + +G V K+  +G FV   G 
Sbjct: 169 IKVDKEEQSIIVSRKKTLDDERKKRKELINNIAQQEG--LIEGVVKKITTYGMFVDV-GG 225

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            DGLVH S++S +     S + KEGD V VK++ +D DR  + LS+K    +    I
Sbjct: 226 VDGLVHYSEISYKGPVNPSILYKEGDKVPVKVVKYDKDRKHLSLSIKAALPDPWGEI 282



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 32/195 (16%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV-----IGMGGKVIRGIVEQ 580
           + R H+   +   L +   ++ +     + + +    I        +G   +    I E 
Sbjct: 262 KDRKHLSLSIKAALPDPWGEIKDSLEVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEI 321

Query: 581 TGAK--------------VNID------DDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           +  K              ++++      D+  ++++  +L       +         ++ 
Sbjct: 322 SWDKNIKNPKDYISKGQEIDVEVIEINSDERRLRVSLRNLLS-----KPFDEFMKNHKIG 376

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G+V     FGAFV   G+ +GL+H    S +R  K  D    GD + VK++  D+ 
Sbjct: 377 DVIEGEVTSTTSFGAFVKI-GSVEGLLHNEDASWDRNEKCKDKFNNGDIIKVKIIKIDEE 435

Query: 681 G-KIKLSMKVVDQNT 694
           G KI LS+K + ++ 
Sbjct: 436 GQKISLSIKELSESP 450



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            ++      +V  I KG++  + DFG FV      D L+H   +S   +      +K GD
Sbjct: 450 PVQEYAKNHKVGDIVKGKIRDIKDFGVFVELNKNVDALIHKEDISASTLEN----LKIGD 505

Query: 669 TVWVKLLDFDDRG-KIKLSMKVV 690
            +   +   D++  +I+LS+K +
Sbjct: 506 EIEAAIAFIDEKKNRIRLSVKNL 528


>gi|292654863|ref|YP_003534760.1| translation initiation factor aIF-2 subunit alpha [Haloferax
           volcanii DS2]
 gi|291371800|gb|ADE04027.1| translation initiation factor aIF-2 alpha subunit [Haloferax
           volcanii DS2]
          Length = 266

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V  + DFG FV      D  GL HIS++++  +    D V+EG TV  K+
Sbjct: 7   PDPGELVVGKVDDIADFGVFVDLEEYEDKRGLCHISEVASGWIKNVRDHVREGQTVVAKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L+ ++   +I LS+K V+++  K 
Sbjct: 67  LEVNESSQQIDLSIKDVNEHQRKE 90


>gi|77862413|gb|ABB04481.1| 30S ribosomal protein S1 [Yersinia kristensenii]
          Length = 241

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 10/186 (5%)

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
               +         G T +  +      +  ++  A ++A      I  ++    +    
Sbjct: 66  DEVDVALDAVEDGFGETLLSREKAKRHEAWLMLEKAYEEAATVTGVINGKVKGGFTVELN 125

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  F P      +    +R+ + + GK +   V +   K N      V ++  ++ E E
Sbjct: 126 GIRAFLPGSL---VDVRPVRDTLHLEGKELEFKVIKLDQKRN-----NVVVSRRAVIESE 177

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            + E  + + ++ E  ++ KG V  + D+GAFV   G  DGL+HI+ ++ +RV   S++V
Sbjct: 178 NSAERDQLLENLQEGMEV-KGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIV 235

Query: 665 KEGDTV 670
             GD +
Sbjct: 236 NVGDEI 241


>gi|313203212|ref|YP_004041869.1| tex-like protein [Paludibacter propionicigenes WB4]
 gi|312442528|gb|ADQ78884.1| Tex-like protein [Paludibacter propionicigenes WB4]
          Length = 713

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV      +GLVHIS +S + ++  +DVV     V V++L+ D  R ++
Sbjct: 649 GIVTNITNFGAFVDIGIKENGLVHISNMSDKFISNPADVVSVHQHVKVRVLEVDAVRKRV 708

Query: 684 KL 685
           +L
Sbjct: 709 QL 710


>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
          Length = 220

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 82/220 (37%), Gaps = 16/220 (7%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R I+ ++ LL R+ GS++F++GDT  IV V  G  E                 M Y+  
Sbjct: 12  LRPINCEINLLSRSDGSTMFMQGDTTIIVGVN-GPLE------------TRSQKMAYDRA 58

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                     G     +       +      +  +      + I  +  +  G      +
Sbjct: 59  SIEVTYTPLKGPAKIDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAI 118

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             S LAL+++G+ +   +A ++  + K+    II  D S  ++      +     +  + 
Sbjct: 119 NASCLALINSGLSLKFTIAAVSCMIEKETGQVIIDPDSSQLQNAKAEFTYAFDSINKDLV 178

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                  +G  S++  + ++ + ++   ++ +   +V  +
Sbjct: 179 CCH---SVGRFSQSEFLASVDKCRQVSKYVFDYYREVTKK 215



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAV 70
           RP+  E   ++R SDG+ +   G+T ++  V      RS K   D   + V Y       
Sbjct: 13  RPINCEINLLSR-SDGSTMFMQGDTTIIVGVNGPLETRSQKMAYDRASIEVTY------- 64

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                  L+  ++  +   LI   I  +        +   T V IN+ +          +
Sbjct: 65  -----TPLKGPAKIDDR--LIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACA 117

Query: 131 MVAASAALMLSGLPFEGPVVGAQ--VDYINGQYVLNPRLDEDQG 172
           + A+  AL+ SGL  +  +      ++   GQ +++P   + Q 
Sbjct: 118 INASCLALINSGLSLKFTIAAVSCMIEKETGQVIIDPDSSQLQN 161


>gi|213023528|ref|ZP_03337975.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 83

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 3  DVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ 54
          +    E ++    + LETG +ARQ+  AV+ +  +T V  TVV  +     +
Sbjct: 28 NPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGRKKPSQAR 79


>gi|124802732|ref|XP_001347578.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23495160|gb|AAN35491.1|AE014833_62 RNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1290

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQL--STERVAKTSD 662
           +         ++N I+ G + K+ DFG FV F    G ++GLVH + +  + +RV   ++
Sbjct: 317 DKSYDDYMALKLNNIFNGTINKITDFGLFVSFKTNEGYKEGLVHATDILPNRKRVVNMNE 376

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
             K    V VK+    ++ KI L+M  VDQ TGK +V
Sbjct: 377 KFKRNMKVKVKVKGIFNQ-KISLNMSEVDQKTGKNLV 412


>gi|332159278|ref|YP_004424557.1| translation initiation factor IF-2 subunit alpha [Pyrococcus sp.
           NA2]
 gi|331034741|gb|AEC52553.1| translation initiation factor IF-2 subunit alpha [Pyrococcus sp.
           NA2]
          Length = 275

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R   + PE  +     V ++ ++GAF        ++  +HIS++++  V    D +KE
Sbjct: 1   MPRRAREYPEEGEFVVATVKRIHNYGAFFELDEYPGKEAFMHISEVASTWVRNIRDYLKE 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           G  V  K++  D  +G I LS++ V Q   K
Sbjct: 61  GQKVVAKVIRVDPKKGHIDLSLRRVTQQQRK 91


>gi|218438198|ref|YP_002376527.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
 gi|218170926|gb|ACK69659.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
          Length = 284

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 20/184 (10%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
            N +    +     ++ +       ++     L  F PR  +  +  + + +++G     
Sbjct: 95  WNQVKEIAESGTSVQMRVTGINRGGVTGEVEGLRGFIPRSHL--VEKEDLDSLVGQSI-- 150

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                  T   + +D D    + S       AA   +   T       + +G+V K+  +
Sbjct: 151 -------TANFIQVDPDNNKLVLSQRQLVRAAAMSQLTIGT-------LVEGKVAKIQPY 196

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G FV   GA  GL+HI+Q+S   +   + + K G T+ V +++ D+ + +I LS KV++ 
Sbjct: 197 GVFVDINGAT-GLLHITQVSGVHIDALTTIFKIGQTIKVMIVEIDEYKNRIALSTKVLES 255

Query: 693 NTGK 696
             G+
Sbjct: 256 YPGE 259



 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +       E  +I +G+V++    GA+V   G   G V + + S E V   +D +   
Sbjct: 6   QALEQFNYNFEKGQIVRGKVIQYTSDGAYVEIGGKSPGFVPLREASIEPVTNLNDYLPLD 65

Query: 668 DTVWVKLL-DFDDRGKIKLSMKVV 690
                 ++   D  G++ LS + +
Sbjct: 66  QEQDFLIISSADAEGQLILSRRQL 89


>gi|269122678|ref|YP_003310855.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616556|gb|ACZ10924.1| RNA binding S1 domain protein [Sebaldella termitidis ATCC 33386]
          Length = 681

 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++ D  +  +I + ++ +++DF   V      +G+VHIS++S  RV    +    G
Sbjct: 412 DPWETVKDKYQKGQILEREIKEILDFALLVEMEENVEGMVHISEISYRRVNNLKEKFTVG 471

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           + +  K+L+F+ ++ ++ LSMK +  +    I
Sbjct: 472 EKIKFKILEFNEEKRRVSLSMKAILDDIWANI 503



 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++  AK+   D    KI  S     E   +         +   + + +V +VM FG  V 
Sbjct: 216 DKIKAKIIELDKENKKIKMSIKQMKE---DPWNIFIAKYKTGDVLEAEVSEVMPFGIVVE 272

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
                 G +HIS++S   + + S     G  +  ++++ D++G+  KLS+K +D+N    
Sbjct: 273 -HEHNRGFIHISEISWHPIEELSKCYSLGQKLKARIIEIDEKGRNYKLSVKQLDENPWDK 331

Query: 698 IV 699
           +V
Sbjct: 332 LV 333



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++         +   + +G + +++DFG  V   G   G +HIS++    V     +   
Sbjct: 156 KKEEEDFYQTVQKGDVLEGTIKEILDFGLIVDL-GKTTGFIHISEVDWSSVKDLKHLFNA 214

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            D +  K+++ D +  KIK+S+K + ++  
Sbjct: 215 NDKIKAKIIELDKENKKIKMSIKQMKEDPW 244



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 88/249 (35%), Gaps = 20/249 (8%)

Query: 465 GLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           G +K+  DF ++ D+       H+  +D+        +      +K   I  +     ++
Sbjct: 174 GTIKEILDFGLIVDLGKTTGFIHISEVDWSSVKDLKHLFNANDKIKAKIIELDKENKKIK 233

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRN--VIGMGGKVIRGIVEQ 580
            + +        +     ++   L      V    I  +   N   I +       I E 
Sbjct: 234 MSIKQMKEDPWNIFIAKYKTGDVLEAEVSEVMPFGIVVEHEHNRGFIHISEISWHPIEEL 293

Query: 581 TGA----------KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           +             + ID+ G     S    +          + +  +V    +G + K+
Sbjct: 294 SKCYSLGQKLKARIIEIDEKGRNYKLSVKQLDEN----PWDKLVENYKVGDTVEGVIEKI 349

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI-KLSMKV 689
           +DF A +       G +HIS++S        +  K GDTV  K+++ +   KI KLS+K 
Sbjct: 350 LDF-AILPSVDDVLGFIHISEISWGAHTGVIEQFKLGDTVKAKIIELNKDAKIFKLSIKR 408

Query: 690 VDQNTGKPI 698
           +  +  + +
Sbjct: 409 LSSDPWETV 417



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           ++  +I D   +N+   G+V+ + ++G F       +  +H +  S E+        K G
Sbjct: 498 DIWANIHDKYTLNQEVSGKVINIQEYGIFAELEDGLEVFIHRNDFSWEKEEHKE--YKLG 555

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPI 698
           D V  ++L  D++  KI   +K + Q+  K +
Sbjct: 556 DIVNFRILKIDEKEKKISGGIKQLTQSPWKEM 587


>gi|268325868|emb|CBH39456.1| translation initiation factor 2, alpha subunit [uncultured
           archaeon]
          Length = 269

 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++    V ++  FGAFV     G ++GL+HIS++++  V    D V+E   V  K+
Sbjct: 7   PEKGELVICAVKELKSFGAFVSVVEYGGKEGLIHISEVASGWVKHLRDYVREEQKVVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKPIV 699
           L  D  RG I LS+K V++   +  V
Sbjct: 67  LFVDARRGHIDLSLKAVNEGQKREKV 92


>gi|86356537|ref|YP_468429.1| transcriptional accessory protein [Rhizobium etli CFN 42]
 gi|86280639|gb|ABC89702.1| probable transcriptional accessory protein (RNA binding S1 domain)
           [Rhizobium etli CFN 42]
          Length = 769

 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +  ID+   +      +AE+E      R   ++ T    VN+I         +G V  
Sbjct: 600 DPRQFIDEKFGLPTVKDIIAELEKPGRDPRPSFKTATFAEGVNEISDLTPGMVLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R +I LSM+
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMR 719

Query: 689 VVD 691
             D
Sbjct: 720 RDD 722


>gi|256962714|ref|ZP_05566885.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|256953210|gb|EEU69842.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
          Length = 122

 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  +  G +  +  +GAFV       GL+H+S++          ++  G  V V++
Sbjct: 1   MKYKIGMVLSGIITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQKVTVQV 60

Query: 675 LDFDD-RGKIKLSMKVVD 691
           +D D+   KI LS++ ++
Sbjct: 61  IDVDEYSQKISLSLRTLE 78


>gi|319939664|ref|ZP_08014023.1| general stress protein GSP13 [Streptococcus anginosus 1_2_62CV]
 gi|319811253|gb|EFW07559.1| general stress protein GSP13 [Streptococcus anginosus 1_2_62CV]
          Length = 124

 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++ +  KG++  +  +GAFV       GL+HIS++ T  +    +++   D V V+++D
Sbjct: 1   MKIGEKLKGRITGIQPYGAFVELETGDMGLIHISEIRTGYIENIHEILHVDDQVLVQVMD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKASLSMRTLEEE 78


>gi|77409101|ref|ZP_00785816.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1]
 gi|77172279|gb|EAO75433.1| S1 RNA binding domain protein [Streptococcus agalactiae COH1]
          Length = 764

 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 23/133 (17%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           IG+G + ++ I+E       ++ DD    +    +                 +V +  +G
Sbjct: 636 IGVGQETLKDIIEDLLKPGRDLRDDFEAPVLRHDV-----------LDVSDLKVGQELQG 684

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVA----------KTSDVVKEGDTVWVKLL 675
            V  V+DFGAFV      DGL+H S+L   +              S  +  GD V V ++
Sbjct: 685 TVRNVVDFGAFVDIGVHEDGLIHQSRLIKRKRDKKTRKMPPLPHPSKYLSVGDIVTVWVV 744

Query: 676 DFD-DRGKIKLSM 687
           + D +RG+I LS+
Sbjct: 745 EVDAERGRIGLSL 757


>gi|163754589|ref|ZP_02161711.1| putative RNA binding protein with S1 RNA-binding domain [Kordia
           algicida OT-1]
 gi|161325530|gb|EDP96857.1| putative RNA binding protein with S1 RNA-binding domain [Kordia
           algicida OT-1]
          Length = 708

 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A      +         +V     G V  + +FG FV       G
Sbjct: 604 DIVKELEKPGVDPRKAAKLFEFDKNVKTISDVKVGMSLPGIVNNITNFGCFVDIGIKESG 663

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
           LVHIS+L+ E ++  + VVK    + V +++ D+ R +I+LSM
Sbjct: 664 LVHISKLANEFISDVNSVVKLHQHITVTVVEVDEARKRIQLSM 706


>gi|94988955|ref|YP_597056.1| hypothetical protein MGAS9429_Spy1325 [Streptococcus pyogenes
           MGAS9429]
 gi|94990955|ref|YP_599055.1| hypothetical protein MGAS10270_Spy1446 [Streptococcus pyogenes
           MGAS10270]
 gi|94992848|ref|YP_600947.1| hypothetical protein MGAS2096_Spy1351 [Streptococcus pyogenes
           MGAS2096]
 gi|94994835|ref|YP_602933.1| hypothetical protein MGAS10750_Spy1439 [Streptococcus pyogenes
           MGAS10750]
 gi|306826952|ref|ZP_07460252.1| S1 RNA binding domain protein [Streptococcus pyogenes ATCC 10782]
 gi|94542463|gb|ABF32512.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS9429]
 gi|94544463|gb|ABF34511.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS10270]
 gi|94546356|gb|ABF36403.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS2096]
 gi|94548343|gb|ABF38389.1| S1-type RNA-binding domain [Streptococcus pyogenes MGAS10750]
 gi|304430970|gb|EFM33979.1| S1 RNA binding domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 125

 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G +  +  +GAFV       GL+HIS++ T  +     ++  G+ V V+++D
Sbjct: 1   MKIGDKLHGTITGIKPYGAFVALDNGTTGLIHISEIKTGFIDDIDQLLAIGNQVLVQVID 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+   K  LSM+ + + 
Sbjct: 61  IDEYSKKASLSMRTLAEE 78


>gi|300867598|ref|ZP_07112247.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
 gi|300334405|emb|CBN57417.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
          Length = 306

 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ +I +G++  +  FG FV F     GL+HI ++S + +     V   G  +   +++ 
Sbjct: 197 EIGQIIEGKISSIKQFGVFVDF-DGITGLLHIKEVSQKYINNLEKVFSVGQIIKAMIINL 255

Query: 678 D-DRGKIKLSMKVVDQNTGK 696
           + +RG+I LS + ++   G+
Sbjct: 256 NEERGRISLSTRFLESYPGQ 275


>gi|254424866|ref|ZP_05038584.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
 gi|196192355|gb|EDX87319.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
          Length = 304

 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E  AAR    S     E+ +   G +  +  FGAFV F GA  GL+HI Q+S   ++   
Sbjct: 185 ERIAARATAMSSLTKGELIE---GTIASLKPFGAFVDFGGA-SGLLHIKQISKSYISALG 240

Query: 662 DVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           DV K GD +   +L+ D+ RG+I LS +V+++  G+
Sbjct: 241 DVFKVGDPIKAVVLNIDEQRGRIALSTQVLEKYPGE 276


>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
           acidocaldarius DSM 639]
          Length = 276

 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 101/270 (37%), Gaps = 39/270 (14%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
            K +    L++ VR+DGR     R +   +G  ++  GS+L   G+T  +  V L   ED
Sbjct: 15  KKDMILSALERGVRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKL--EED 72

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------P 411
             Y D+     + + +++   LP A  E    G P    I   R+  R++          
Sbjct: 73  SPYPDT---PNQGNLIVNVELLPLAY-ETFEPGPPDENSIELARIVDRSLRDSKAIDLSK 128

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----------------- 454
           ++    +  +TL +   + + DG+   A +  S  A+ D  +P                 
Sbjct: 129 LVIAPGKKVWTLWVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEIKINKEERL 188

Query: 455 ----ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
               ++ PV  +    +     ++++ D + DE+ +      ++ T  G          G
Sbjct: 189 SIPLVNYPVVTVTTAKI---GKYVVV-DPNLDEESIADAKLSISYTKEGTIVGLQKNYSG 244

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKVLS 540
            ++   +      A+     +  E+ K ++
Sbjct: 245 NLTFKEIDAMESTARATSQFLFEELKKQIN 274



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 43/208 (20%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           R LK+  G  A++++G+ L   G T+VLA V  +      D  +   L VN +    A  
Sbjct: 38  RQLKVTLG-YAKKAEGSALVKLGNTLVLAGVKLEEDSPYPDTPNQGNLIVNVELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ----------VIINVMQHD 121
               G       P EN I ++R++DRS+R   +                  V + V+ +D
Sbjct: 97  TFEPGP------PDENSIELARIVDRSLRDSKAIDLSKLVIAPGKKVWTLWVDVYVLDYD 150

Query: 122 LESSPHVVSMVAASAALMLSGLP---------------------FEGPVVGAQVDYINGQ 160
                    M+A+ AA+  + LP                        PVV      I   
Sbjct: 151 GNIL--DACMLASIAAIYDTKLPKVEVEGDEIKINKEERLSIPLVNYPVVTVTTAKIGKY 208

Query: 161 YVLNPRLDEDQ-GSLDLFVSGTQDAVLM 187
            V++P LDE+      L +S T++  ++
Sbjct: 209 VVVDPNLDEESIADAKLSISYTKEGTIV 236


>gi|13541243|ref|NP_110931.1| translation initiation factor IF-2 subunit alpha [Thermoplasma
           volcanium GSS1]
 gi|20532125|sp|Q97BP2|IF2A_THEVO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|14324628|dbj|BAB59555.1| translation initiation factor eIF2 alpha subunit [Thermoplasma
           volcanium GSS1]
          Length = 254

 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +PEV  +   ++ +V +FGA          +G +HIS+++T  V      ++EG  V  K
Sbjct: 6   LPEVGDLVVVKITEVKNFGANGILEEYPGVEGYIHISEVATGWVKHIRSYLREGQRVVCK 65

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGKP 697
           +++ + +R  + LS+K V+Q+  + 
Sbjct: 66  VINVNQERKNVDLSLKRVNQHQSRE 90


>gi|228478329|ref|ZP_04062937.1| general stress protein GSP13 [Streptococcus salivarius SK126]
 gi|322517143|ref|ZP_08070027.1| RNA binding protein [Streptococcus vestibularis ATCC 49124]
 gi|228250008|gb|EEK09278.1| general stress protein GSP13 [Streptococcus salivarius SK126]
 gi|322124293|gb|EFX95804.1| RNA binding protein [Streptococcus vestibularis ATCC 49124]
          Length = 122

 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV       GL+HIS++ T  +    + +K    V V+++D
Sbjct: 1   MKIGDKLRGVITGIKPYGAFVSLENGTTGLIHISEIKTGYIDNIYNTLKVDQEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQNTGK 696
           FD+   K  LS++ +++   K
Sbjct: 61  FDEFTQKASLSLRTLEEEKNK 81


>gi|222100022|ref|YP_002534590.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572412|gb|ACM23224.1| RNA binding S1 domain protein [Thermotoga neapolitana DSM 4359]
          Length = 539

 Score = 70.7 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 95/269 (35%), Gaps = 33/269 (12%)

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG-------------DEDHLGHMDFKVA 494
           L + G P+   +   A G        ++ + + G             +E  +  +D    
Sbjct: 96  LYEEGKPVKARIVSQAKGGYNVVLKGVVPAFLPGSHSLLKREEPFPREEIEVLILDMAHT 155

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV- 553
              + I   +  ++   + E              +  +N  S +  E    +  F PR  
Sbjct: 156 RRGTRIVVSRKAIQERKVDEFFSEKKTGDVVECTVRRIN-PSGIEVEVSDGIRGFIPRSE 214

Query: 554 --EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
                 I P+   +V+ +G KV   I+E         D     +  S    +    +   
Sbjct: 215 LSYDTRITPE---DVVQVGQKVTAKIIEL--------DKDRRSVVLSLKQLMP---DPWN 260

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVKEGDTV 670
            + +   V K+  G+V  +  FG FV      +GLV  S++          DVVK GD V
Sbjct: 261 KVEEKYPVGKVVSGEVTSIHPFGFFVRLEPGVEGLVPRSEVFWGNSRKNLEDVVKVGDLV 320

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            V++++ D +  K+ LS +    +  + I
Sbjct: 321 KVEVINVDRENRKLTLSYRKAKGDPWENI 349



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 27/241 (11%)

Query: 461 GIAMGLVKDGDDFIILSDIS-GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
           G + G V +G+    + D   G+E  L  ++                 +   I    M  
Sbjct: 40  GKSEGFVPEGELIRPMDDYKIGEELTLQILNLNYEERS-------TLSEKRPIFRKTMEE 92

Query: 520 ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE 579
             +  + G+      +S+      + L    P                  G   +    E
Sbjct: 93  LRKLYEEGKPVKARIVSQAKGGYNVVLKGVVPAFL--------------PGSHSLLKREE 138

Query: 580 ---QTGAKVNIDDDGTVKIASSSLAEIEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGA 635
              +   +V I D    +  +  +   +A +E          +   + +  V ++   G 
Sbjct: 139 PFPREEIEVLILDMAHTRRGTRIVVSRKAIQERKVDEFFSEKKTGDVVECTVRRINPSGI 198

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
            V       G +  S+LS +      DVV+ G  V  K+++ D   + + LS+K +  + 
Sbjct: 199 EVEVSDGIRGFIPRSELSYDTRITPEDVVQVGQKVTAKIIELDKDRRSVVLSLKQLMPDP 258

Query: 695 G 695
            
Sbjct: 259 W 259



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +N+D +      S   A+     +   +I D   V     G+V+ ++  G FV      +
Sbjct: 325 INVDRENRKLTLSYRKAKG----DPWENIEDRYHVGNTVAGRVISIIRQGVFVELEEGIE 380

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G V IS+LS +RV    +VVK G+ V VK+++ D +  ++ LS+K   +N  K
Sbjct: 381 GFVPISELSWKRVDSPEEVVKVGEKVKVKIMNLDKENRRLSLSIKRTQENPWK 433


>gi|242309366|ref|ZP_04808521.1| 30S ribosomal protein S1 [Helicobacter pullorum MIT 98-5489]
 gi|239523937|gb|EEQ63803.1| 30S ribosomal protein S1 [Helicobacter pullorum MIT 98-5489]
          Length = 551

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER-VAKTSDVVKE 666
           +  + + +  EV    K  V  +  +G FV      +G +HIS++S  + +    + +K 
Sbjct: 269 DPWKEVENELEVGDAIKVVVSNIEPYGVFVDLGNDIEGFLHISEISWNKNIQNPEEFLKT 328

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           G  + V++++ D    ++++S+K +    
Sbjct: 329 GQEIDVEVIEIDTKERRLRVSLKKLLDKP 357



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 580 QTGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +TG +++++  +   K     ++  +   +         +   I KG V  + DFGAF+ 
Sbjct: 327 KTGQEIDVEVIEIDTKERRLRVSLKKLLDKPFDQFAKKYKEGDILKGVVATLTDFGAFIK 386

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
                DGL+H       +  K  D++K G+ V VK+   D ++ +I L+ K +
Sbjct: 387 L-DGIDGLLHNEDAYWNKNEKCKDLMKIGEEVEVKIAKIDKEKERISLTRKGI 438



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++     V  ++D  V             ++ +       E N   KG++ K+  FG FV
Sbjct: 156 IKACIINVKPEEDSIVISRKRLFEIENNIKKDVIDNLLKQEGN--LKGRIKKITSFGMFV 213

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
              G  +GLVH +++S +     S + KEGD V +K+L +D ++ ++ LS+K   ++  K
Sbjct: 214 DVEG-VEGLVHYTEISHKGPVNPSKLYKEGDIVSLKVLSYDKEKRRLALSIKDTIEDPWK 272

Query: 697 PI 698
            +
Sbjct: 273 EV 274



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I E+   K+   D    +I+ +    I      +         ++  +G V  + DFG 
Sbjct: 412 KIGEEVEVKIAKIDKEKERISLTRKGIIS---SPVEEFAKRHSEDEEVEGVVRDIKDFGV 468

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           F+      D L+    L      K  DV K GD +   +   D    +I++S++ +++  
Sbjct: 469 FIKIDEDMDALIRNEDL---FPIKKEDV-KVGDKIKGVISLIDTQNNRIRVSIRRLEKQK 524

Query: 695 GK 696
            K
Sbjct: 525 EK 526


>gi|158284969|ref|XP_308011.4| AGAP002177-PA [Anopheles gambiae str. PEST]
 gi|157020848|gb|EAA03766.4| AGAP002177-PA [Anopheles gambiae str. PEST]
          Length = 234

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 19/236 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +  +  +L R+  S+   +G TQ +V    G  E +      + ++     + Y   
Sbjct: 15  LRRMVCETNVLSRSDCSAALSQGATQVMVAAN-GPAEVKFKN---AESENCHLEVQY--- 67

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                  S  G    +      L +R+   V+   A     + I  +     G     ++
Sbjct: 68  ------RSNAGQEDIQHRLMESLIKRSFVRVVATPAFCRSAVYIYVQEMTDRGGLLACSI 121

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             S LAL+ +GV ++  VA +   + +DG    ++ D    +  L    F       G  
Sbjct: 122 NASCLALITSGVELNFTVAAVHCIMTEDG---AMILDPDHKQLKLARSSFTFVFDSIG-K 177

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILN--EMSKVLSESRLQLGEFTPRVEI 555
                   G  +       +   ++    I +     +     R +      R+  
Sbjct: 178 NTVTSYVHGSFTFEEYEQVVSVCRKAVEKIFDFYRKQRASHHRRTEKERNKKRIHP 233



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 23/224 (10%)

Query: 4   VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLT 60
             TV      R +  ET  ++R SD +   + G T V+        +K      +   L 
Sbjct: 6   TKTVANSLNLRRMVCETNVLSR-SDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLE 64

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQH 120
           V Y+              + + +    E LI R   R +        ++   +   V + 
Sbjct: 65  VQYR----------SNAGQEDIQHRLMESLIKRSFVRVVAT--PAFCRSAVYI--YVQEM 110

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQ---GSLDL 176
                    S+ A+  AL+ SG+     V         +G  +L+P   + +    S   
Sbjct: 111 TDRGGLLACSINASCLALITSGVELNFTVAAVHCIMTEDGAMILDPDHKQLKLARSSFTF 170

Query: 177 FVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK 220
                    +   +  +   E+     +       + + +   K
Sbjct: 171 VFDSIGKNTVTSYVHGSFTFEEY-EQVVSVCRKAVEKIFDFYRK 213


>gi|209877631|ref|XP_002140257.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
 gi|209555863|gb|EEA05908.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
           RN66]
          Length = 239

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           ++R+DGR    +R I+ ++G+     GSS F  G ++A  V         Q  ++ +   
Sbjct: 2   EIRLDGRQYLELRPINIRIGVFHGLSGSSDFSMGLSRATAVA-------WQPEETNNIRG 54

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           ++   +       +TG+          E        R +  ++         + +  ++ 
Sbjct: 55  KSYLDVIIRPNSGSTGDT---------EKLLELYCTRVLEDIIDFKQIPRCIVSVAIQVI 105

Query: 431 ESDGSSSMATVCGSSLALMDAGVPI-SKPVA---GIAMGLVKDGDDFIILSDISGDEDHL 486
             DG         + LAL+DAG+P+ + P+A     A     +     I+ D +G+E   
Sbjct: 106 SQDGPIFPICFNAAVLALLDAGIPMTTTPLAISIAEACTYQLNDLSKHIIIDPNGEEIDK 165

Query: 487 GHMD--FKVAGTDSGITAMQMDMKIGGISEN 515
                 + V+   + I A  +  K  GI+ N
Sbjct: 166 CISCSHYIVSSRSNQIIACLI-AKGTGITYN 195


>gi|159026257|emb|CAO86406.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 293

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 20/184 (10%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
              +    +  K  +L +       ++     L  F PR  +  I  + + ++IG     
Sbjct: 103 WENVREISESGKSVQLRVTGVNKGGVTGEVEGLKGFIPRSHL--IEKNDLDSLIG----- 155

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
                  T   + ID +    + S        A   +        V K+  G VVK+  +
Sbjct: 156 ----QLLTATFIQIDQENNKLVLSQREIARANAISQLA-------VGKLLSGTVVKLQPY 204

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G FV  CG   GL+H  Q++           K G  + V + + D+ + +I LS K+++ 
Sbjct: 205 GVFVD-CGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVVAEIDEYKNRISLSTKILEA 263

Query: 693 NTGK 696
           + G+
Sbjct: 264 HPGE 267



 Score = 38.4 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +  +    ++   + +       E  +I +G+V +    GA++   G     + + ++S 
Sbjct: 1   MTPNPAFSMDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAYIDIGGKSSAFIPLREISL 60

Query: 655 ERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKV-VDQNTGKPI 698
           E V   ++ +  G      +    D  G++ LS++  + Q   + +
Sbjct: 61  ENVISIAEALPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENV 106


>gi|297568691|ref|YP_003690035.1| RNA binding S1 domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924606|gb|ADH85416.1| RNA binding S1 domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 417

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKE 666
           +    +         ++G+V ++MDFGAFV      DGLVHIS+L +  R+    +VV+ 
Sbjct: 263 DPWEGVAARFPEGSRHQGKVARLMDFGAFVTLAPGIDGLVHISKLGAGRRINHPREVVQP 322

Query: 667 GDTVWVKLLDFD-DRGKIKLSM--KVVDQNTGKP 697
           G+T+ V++   D +R ++ LS+      +  G+P
Sbjct: 323 GETLEVEIEAIDSERRRLSLSVPPPAESEAAGEP 356


>gi|156320322|ref|XP_001618165.1| hypothetical protein NEMVEDRAFT_v1g225439 [Nematostella vectensis]
 gi|156197791|gb|EDO26065.1| predicted protein [Nematostella vectensis]
          Length = 122

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + ++DG + +A +   +LAL++AG+P+   V+   +  V D      L DI+  E+  G 
Sbjct: 1   VLQADGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTP----LMDINYLEESTGG 56

Query: 489 MDFKVAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
               +A       I   QMD +   +  + M   L  A +G   I 
Sbjct: 57  PQLTLAILPKSDKIVLFQMDSR---LHMDNMDKVLALAMKGCKDIY 99


>gi|257467123|ref|ZP_05631434.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918254|ref|ZP_07914494.1| LytB protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692129|gb|EFS28964.1| LytB protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 545

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 12/140 (8%)

Query: 558 IPPDQIRNVIGMGGKVI-RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I       ++G    VI + I + +  K +     + K  +      E A+         
Sbjct: 143 INEKDGEAMVGKNIDVIVKDIKQDSRDKRSKKITFSKKDITLMKEGEEFAK--------- 193

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             V  +    V  +MDFG  V     R G +HIS++S +R+    D+   G TV  K+L 
Sbjct: 194 LTVGDVVTCTVSGIMDFGLSVMIDHLR-GFIHISEVSWKRLDDLRDLYTVGQTVEAKILS 252

Query: 677 FDDRGK-IKLSMKVVDQNTG 695
            D+  K IKLS+K +  N  
Sbjct: 253 LDEEKKNIKLSIKQLTPNPW 272



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            +G+V +V+ +GAFV      +GLVHIS  +  ++     +  K G+TV VK+L+F+  G
Sbjct: 285 VEGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEG 344

Query: 682 K-IKLSMKVVDQNTG 695
           + +KL  K + +N  
Sbjct: 345 RKLKLGFKQLVENPW 359



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +  +V    + ++  +MDFG FV      DG +     S + V    D  + 
Sbjct: 440 KSPWDKAMEEYKVGTTVEKKIKNIMDFGLFVELSKGIDGFIPTQFASKDFVKDLKDKFEI 499

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V  ++++ + +  KIKLS+K ++
Sbjct: 500 GQVVKAQIVEINQETQKIKLSIKKIE 525



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
               ++ +  FG F       D  VH S              + GDT+  K+L+ + +  
Sbjct: 372 LTATILDIKPFGLFAEIESGVDVFVHSSDFGW--PGDEPANYQVGDTISFKVLELNVEDK 429

Query: 682 KIKLSMKVVDQNTG 695
           KIK S+K + ++  
Sbjct: 430 KIKGSIKALKKSPW 443


>gi|262193857|ref|YP_003265066.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
 gi|262077204|gb|ACY13173.1| RNA binding S1 domain protein [Haliangium ochraceum DSM 14365]
          Length = 609

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P V    +G+V  V  FGAFV       GLVH S+L T +V   ++ V  GD   VK+LD
Sbjct: 403 PAVGDTVQGRVRSVAAFGAFVVLPSGHVGLVHKSELRTGQVNDATEEVNVGDEFEVKVLD 462

Query: 677 FDDRG-----KIKLSMKVVDQNTGKP 697
               G     +I LS +V+     K 
Sbjct: 463 VSPDGDSNRLRIGLSRRVLMPGGDKE 488


>gi|225680123|gb|EEH18407.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03]
          Length = 1175

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
           ++   D    K+  S    +                 +I  G+V  V +FGAF+   G  
Sbjct: 695 RIIFVDAEANKLQMSLKESVLEPNYKAPITIRDLNRGQIVTGKVRSVEEFGAFIVIDGTA 754

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
              GL H ++++ ++V     + ++GD V  K+L  D D+ +I L +K 
Sbjct: 755 NLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKA 803



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +VN I +G V +V + G FV         V IS LS   +       +    V  +++  
Sbjct: 640 KVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSYLKDWQSEFQVDQLVHGRIIFV 699

Query: 678 D-DRGKIKLSMK--VVDQNTGKPI 698
           D +  K+++S+K  V++ N   PI
Sbjct: 700 DAEANKLQMSLKESVLEPNYKAPI 723



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           G ++ +   GA V F G   G + +S++S   +   S     G  V V
Sbjct: 65  GTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNV 112



 Score = 44.1 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 5/126 (3%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT---DVPEVNKIYK 624
           G     IR   +     +         I  S+   ++ AR+         D+ E +K+  
Sbjct: 190 GSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGSKV-T 248

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKI 683
           G V  ++  G FV F     G +    +  + VAK         T+   +    DDR + 
Sbjct: 249 GFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQRF 308

Query: 684 KLSMKV 689
            LSMK 
Sbjct: 309 TLSMKE 314


>gi|222153501|ref|YP_002562678.1| hypothetical protein SUB1380 [Streptococcus uberis 0140J]
 gi|222114314|emb|CAR42987.1| putative S1 RNA binding domain protein [Streptococcus uberis 0140J]
          Length = 118

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G +  +  +GAFV       GL+HIS++ T  V   ++++K G  V V+++D
Sbjct: 1   MKIGDKLHGTITGIKTYGAFVALENNTTGLIHISEIKTGYVDNINNLLKVGQKVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+   K  LS++ ++  
Sbjct: 61  YDEYNQKASLSLRTLEAE 78


>gi|260663250|ref|ZP_05864142.1| transcription accessory protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552442|gb|EEX25493.1| transcription accessory protein [Lactobacillus fermentum 28-3-CHN]
          Length = 725

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              D  +     +G V  V+DFGAFV      DGLVH+S+++ +       ++  GD V 
Sbjct: 640 MTMDDLKPGMQLEGTVRNVVDFGAFVDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVT 699

Query: 672 VKLLDFDD-RGKIKLSM 687
           V +   D  R +I+L+M
Sbjct: 700 VWVHAVDKQRDRIQLTM 716


>gi|184154721|ref|YP_001843061.1| hypothetical protein LAF_0245 [Lactobacillus fermentum IFO 3956]
 gi|183226065|dbj|BAG26581.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 725

 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              D  +     +G V  V+DFGAFV      DGLVH+S+++ +       ++  GD V 
Sbjct: 640 MTMDDLKPGMQLEGTVRNVVDFGAFVDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVT 699

Query: 672 VKLLDFDD-RGKIKLSM 687
           V +   D  R +I+L+M
Sbjct: 700 VWVHAVDKQRDRIQLTM 716


>gi|227513988|ref|ZP_03944037.1| S1 domain RNA-binding protein [Lactobacillus fermentum ATCC 14931]
 gi|227087632|gb|EEI22944.1| S1 domain RNA-binding protein [Lactobacillus fermentum ATCC 14931]
          Length = 725

 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              D  +     +G V  V+DFGAFV      DGLVH+S+++ +       ++  GD V 
Sbjct: 640 MTMDDLKPGMQLEGTVRNVVDFGAFVDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVT 699

Query: 672 VKLLDFDD-RGKIKLSM 687
           V +   D  R +I+L+M
Sbjct: 700 VWVHAVDKQRDRIQLTM 716


>gi|225848130|ref|YP_002728293.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644676|gb|ACN99726.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 573

 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +V  + KG+V K+++ GAFV      +G + +S++S ER+   SD +   
Sbjct: 424 DAFNDFVSKHKVGDVVKGKVKKLIEKGAFVDITDEIEGFIPVSEISKERIKIPSDKLSLH 483

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
             V  K++  D    KI LS+K +
Sbjct: 484 QEVEAKIIKIDTQNKKITLSIKQL 507



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 10/218 (4%)

Query: 478 DISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           D   +E       F       G   +     +       +  A +  K+ +  IL++  K
Sbjct: 52  DQDVEEGQEIEAVFTGKRDKDGYFILSRRGIVNKEKLQKLKDAFENKKKVKATILSKQDK 111

Query: 538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIAS 597
             + S      F P  E      + +    G   +      E+ G   NI       + S
Sbjct: 112 GYTVSVEGFRGFMPLSESSLKRDENLPE--GFTFEAYIVKFEERGRNPNI-------VIS 162

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
              A IE        I  + +  +  K +VVKV   GA +       G +  S++S ++ 
Sbjct: 163 RKQALIEEKELEKEKILSLLKEGQKVKAKVVKVQPNGAVLSIEDVLYGFLPKSEISWDKS 222

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            K  +V+K GD V V + +  D+  I LS+K+++ N  
Sbjct: 223 RKVEEVLKVGDEVEVVVKEIKDKKPI-LSLKLLEGNPW 259



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E          +  + + ++  +   G  V   G  +G +  S++S     K    +K G
Sbjct: 255 EGNPWDKFDKNIGDVVEVKIKDINKGGLVVDL-GLLEGFIPNSEISHFDYVKAKKNLKVG 313

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           DTV  K+ + D ++GK+KLS+K   +N 
Sbjct: 314 DTVVAKIFEIDKEKGKVKLSIKQAQENP 341


>gi|6690127|gb|AAF23994.1| RpsA [Pseudomonas aeruginosa]
          Length = 267

 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   + E   I +G V +V   GA +      +G++  S++S +RV    +V+KEG
Sbjct: 147 DPFSNYASLHEKGSIVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEG 206

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           + V  K++  D + + I LS+K  D +  K 
Sbjct: 207 EEVEAKIISIDRKSRVISLSVKSKDVDDEKD 237



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +           +          G +  + DFG F+   G  D
Sbjct: 41  LDIDEERRRISLGIKQCKSN----PWEDFSSQFNKGDRISGSIKSITDFGIFIGLDGGID 96

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   V +   V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 97  GLVHLSDISWNEVGE-EAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP 148



 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 638 HFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
                 +GLVH+S++    +    S VV+ GD V V++LD D+ R +I L +K    N  
Sbjct: 3   KLEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPW 62

Query: 696 KP 697
           + 
Sbjct: 63  ED 64


>gi|150865289|ref|XP_001384440.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
 gi|149386545|gb|ABN66411.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
          Length = 1699

 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            V +I++G V +  DFG F+   G     GL H SQ++ + V   + +  EGD V VKLL 
Sbjct: 1246 VGEIFEGSVKRATDFGVFIKLDGTLNITGLCHHSQIADKDVDNVTSLFGEGDRVKVKLLA 1305

Query: 677  FD-DRGKIKLSMKV 689
             D D+ ++ L MK 
Sbjct: 1306 IDSDKKQLSLGMKA 1319



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
            I+ +  +        +      V       +    P      +       V+   G   
Sbjct: 510 EIIKVLPEAGGIVIKVLDEFEGFVPGSHMSDIKLVYPE-RKFKVGSKVRGRVLSKQGN-- 566

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           + +V    + VNI+DD  +            A+   ++   V            K +  G
Sbjct: 567 KLVVTFKKSLVNIEDDEVLARFED-------AKIGFKTPAIVE-----------KFVHNG 608

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           A V F G     +  +++S   V+  SD ++ G TV V++LD     K
Sbjct: 609 AIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTVNVRVLDVKQEEK 656



 Score = 37.2 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 606  AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            AR+ + +     +V + Y  +++KV D    V           I+        K   V  
Sbjct: 1058 ARKNMVASIKDVKVGQKYPARILKVRDTYVLVELGEKVVASAFITDALDNYSDKLESVFT 1117

Query: 666  EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
              +     +LD D D  KI +S++  D  T K I
Sbjct: 1118 TNEFATATVLDIDTDSEKIAVSLRT-DSPTDKVI 1150


>gi|145251307|ref|XP_001397167.1| rRNA biogenesis protein RRP5 [Aspergillus niger CBS 513.88]
 gi|134082698|emb|CAK42591.1| unnamed protein product [Aspergillus niger]
          Length = 1822

 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
            +V + D    K+  S    +              +  ++  G+V KV +FGAF+   G++
Sbjct: 1292 RVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEFGAFIVIDGSK 1351

Query: 644  D--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
            +  GL H S+++  RV     + +EGD V  K+L  D +  KI   +K 
Sbjct: 1352 NISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQEKISFGLKA 1400



 Score = 51.8 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+   GA V F G   G + +S++S   +   S   + G  V V  L  D  R K+
Sbjct: 661 GTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKL 720

Query: 684 KLSMKV 689
            +S K 
Sbjct: 721 AVSCKD 726



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     +VN I +G V +V D G FV         V IS LS   + +  D  + 
Sbjct: 1226 QDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSYLKEWKDSFQV 1285

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D ++GK+++S+K  V+D N   P+
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPL 1320



 Score = 44.5 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 585 VNIDDDGTVKIASSSLAEIEAARE--MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           ++I     +   +   +  +AA+   +   I D+ E   +  G +  +   G FV F G 
Sbjct: 804 IDIQRAHRLIKVTGRQSLKKAAKHGSIPSEIEDLKEGADV-TGFIRNITMNGVFVEFLGG 862

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
             GLV    +  E V K    +  G  V   +   D D  +  LSM
Sbjct: 863 VIGLVPKRLVGDENVNKPDYGMARGQVVTATVHSVDADFQRFILSM 908


>gi|223984133|ref|ZP_03634285.1| hypothetical protein HOLDEFILI_01577 [Holdemania filiformis DSM
           12042]
 gi|223963927|gb|EEF68287.1| hypothetical protein HOLDEFILI_01577 [Holdemania filiformis DSM
           12042]
          Length = 121

 Score = 70.3 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++ +I +G +  +  +GAFV       GL+HIS++S   V   +  V   D V VK+
Sbjct: 1   MQYQIGQIVEGTITGIQPYGAFVSLDEETSGLIHISEISEGFVKDVNHFVHVHDRVKVKI 60

Query: 675 LDFDD-RGKIKLSMKVV 690
           +DFD    + +LS+K +
Sbjct: 61  IDFDKATHQARLSLKAL 77


>gi|319938274|ref|ZP_08012671.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp. 29_1]
 gi|319806567|gb|EFW03225.1| polyribonucleotide nucleotidyltransferase [Coprobacillus sp. 29_1]
          Length = 125

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    +V  I    +  +  +GAF        GL+HIS++S + V      V  G+++ V
Sbjct: 1   MEHRVKVGDIIDVTITGIQPYGAFASLPDHSSGLIHISEISDKFVRSVESFVHVGESIRV 60

Query: 673 KLLDFDDRG-KIKLSMKV 689
           K++D D+R  + KLS+K 
Sbjct: 61  KVIDIDERTHQAKLSLKA 78


>gi|307705996|ref|ZP_07642819.1| hypothetical protein SMSK564_0041 [Streptococcus mitis SK564]
 gi|307620415|gb|EFN99528.1| hypothetical protein SMSK564_0041 [Streptococcus mitis SK564]
          Length = 120

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D
Sbjct: 1   MKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHEALKVDEEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFTGKASLSIRTLEEE 78


>gi|17402904|ref|NP_478126.1| exosome complex component MTR3 [Homo sapiens]
 gi|74736141|sp|Q5RKV6|EXOS6_HUMAN RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog; Short=hMtr3; AltName: Full=p11
 gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
 gi|55930874|gb|AAH52252.1| Exosome component 6 [Homo sapiens]
 gi|119572226|gb|EAW51841.1| exosome component 6 [Homo sapiens]
          Length = 272

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 12/198 (6%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D++     RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E        
Sbjct: 23  DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGGGP 81

Query: 369 TQ---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                      R   +  +   P A G   R       E       + A+ P +      
Sbjct: 82  AGAGGEAPAALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYP 140

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              L + + + E  GS+  A +  ++LAL DAGV +   V G  + L   G     L D 
Sbjct: 141 RAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAP-GPAPTWLLDP 199

Query: 480 SGDEDHLGHMDFKVAGTD 497
           +  E+        VA   
Sbjct: 200 TRLEEERAAAGLTVALMP 217


>gi|302832632|ref|XP_002947880.1| hypothetical protein VOLCADRAFT_120525 [Volvox carteri f.
           nagariensis]
 gi|300266682|gb|EFJ50868.1| hypothetical protein VOLCADRAFT_120525 [Volvox carteri f.
           nagariensis]
          Length = 979

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           Y+G V  V +FGAFV    + +GL+HIS+L+        DVV  G  V VK+L+ D  + 
Sbjct: 68  YEGTVTAVENFGAFVDIGTSTNGLIHISKLAAGFTKNAKDVVSRGQKVTVKVLNVDAAKK 127

Query: 682 KIKLSM 687
           ++ L +
Sbjct: 128 RVSLEL 133


>gi|254566235|ref|XP_002490228.1| DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase [Pichia
           pastoris GS115]
 gi|238030024|emb|CAY67947.1| DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase [Pichia
           pastoris GS115]
 gi|328350623|emb|CCA37023.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Pichia
           pastoris CBS 7435]
          Length = 1005

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR--DG 645
           D +       ++  +    ++ I S      V   Y GQ+  +  +GAF+     R   G
Sbjct: 83  DTNTLYNSQITAHNQERKKKDSINSRLQPIIVGASYSGQITNITPYGAFIRLQALRRPTG 142

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           L HIS++S+  +    DV   GD V   +L      KI LS+K  D+
Sbjct: 143 LCHISEMSSSEIRHPLDVANVGDKVTATVLSV-SSNKISLSLKNPDE 188


>gi|212530734|ref|XP_002145524.1| rRNA biogenesis protein RRP5, putative [Penicillium marneffei ATCC
            18224]
 gi|210074922|gb|EEA29009.1| rRNA biogenesis protein RRP5, putative [Penicillium marneffei ATCC
            18224]
          Length = 1807

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    ++  S    +              +V ++  G+V KV DFGAF+   G  
Sbjct: 1271 RIILVDSENNRLQMSLKESVLDPNFKTPITIRDLKVGQVVTGKVRKVEDFGAFIVIDGSA 1330

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H SQ++ + V     + + GD V  K+L  D ++GK+   +K 
Sbjct: 1331 NVSGLCHRSQMAEQNVQDARKLFEAGDIVKAKILKIDANQGKVSFGLKA 1379



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 553  VEIMAIPPDQIRNVIGMGGKVIRGIV---EQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
            +  MA    +I   I    +++R  +   +++  K+ +         S  L+     R+ 
Sbjct: 1153 LTDMADDYSKIDTTIYKKNEILRACIIDLDKSKKKIFLS-----LRPSKVLSSTLPVRDR 1207

Query: 610  IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
              +  D  + N + +G V +V D G FV         + IS LS   + +  D  +    
Sbjct: 1208 EITSMDQLKPNDVVRGFVRRVADNGLFVTLGHNVSAYIRISDLSDSFLKEWKDEFQTDQL 1267

Query: 670  VWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
            V  +++  D +  ++++S+K  V+D N   PI
Sbjct: 1268 VKGRIILVDSENNRLQMSLKESVLDPNFKTPI 1299



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G ++ +   GA V F G     + +S++S   +   S   ++G  V V  +  D
Sbjct: 641 GTLINIQPNGATVQFYGTVRAFLPVSEMSEAYIKDPSQHFRKGQVVNVHAISVD 694



 Score = 40.7 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 598 SSLAEIEAAREMI--RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +  + +  A +     +  +  EV     G V  +   G FV F G  +GL+    +  E
Sbjct: 796 THKSSLRKALKKNSLPATFEELEVGTEITGFVRGITSHGIFVEFLGGLNGLLPRRLVDDE 855

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
              K    +    ++   +   D+   +  L+M+ ++  TG
Sbjct: 856 HANKPDFGLYRSQSLTATVHQIDEDNRRFTLTMRPLELPTG 896


>gi|116511722|ref|YP_808938.1| RNA-binding protein [Lactococcus lactis subsp. cremoris SK11]
 gi|116107376|gb|ABJ72516.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Lactococcus lactis subsp. cremoris SK11]
          Length = 143

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC---------GARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFFLQNPETNEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
             +  +++D D+  GKI LS++ +++N 
Sbjct: 66  QKIMAQIIDIDEYNGKISLSIRSLEKNP 93


>gi|317136747|ref|XP_001727253.2| rRNA biogenesis protein RRP5 [Aspergillus oryzae RIB40]
          Length = 1818

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +  +I  G++ KV +FGAF+   G     GL H S+++  RV     V  EGD V  
Sbjct: 1316 HDLKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKA 1375

Query: 673  KLLDFDDR-GKIKLSMKV 689
            K+L  D + GKI   +K 
Sbjct: 1376 KILKIDRKQGKISFGLKA 1393



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +  +  +VN + +G V KV D G FV         V +S LS   + +  D  + 
Sbjct: 1219 QDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSYLKEWKDSFQV 1278

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D ++G++++ +K  V+D N   P+
Sbjct: 1279 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPV 1313



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +   GA V F G+  G + +S++S   +   S   + G  V V  L  D    K+
Sbjct: 653 GTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKL 712

Query: 684 KLSMKV 689
            +S K 
Sbjct: 713 AVSCKD 718


>gi|290969232|ref|ZP_06560757.1| putative general stress protein 13 [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780738|gb|EFD93341.1| putative general stress protein 13 [Megasphaera genomosp. type_1
           str. 28L]
          Length = 143

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 45/82 (54%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            + E  K+ +G V  +  FGAFV     + GL+HIS+++ E V    D +K  D V VK+
Sbjct: 1   MIIEAGKVLEGTVTGITKFGAFVELPDKKVGLIHISEVANEYVKDVHDFLKVQDVVKVKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGK 696
           L  DD+GKI LS+K       K
Sbjct: 61  LAVDDKGKIALSIKQAQPMPEK 82


>gi|238488517|ref|XP_002375496.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
 gi|220697884|gb|EED54224.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
          Length = 1827

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +  +I  G++ KV +FGAF+   G     GL H S+++  RV     V  EGD V  
Sbjct: 1325 HDLKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKA 1384

Query: 673  KLLDFDDR-GKIKLSMKV 689
            K+L  D + GKI   +K 
Sbjct: 1385 KILKIDRKQGKISFGLKA 1402



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +  +  +VN + +G V KV D G FV         V +S LS   + +  D  + 
Sbjct: 1228 QDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D ++G++++ +K  V+D N   P+
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPV 1322



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +   GA V F G+  G + +S++S   +   S   + G  V V  L  D    K+
Sbjct: 662 GTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKL 721

Query: 684 KLSMKV 689
            +S K 
Sbjct: 722 AVSCKD 727


>gi|83770281|dbj|BAE60414.1| unnamed protein product [Aspergillus oryzae]
          Length = 1827

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +  +I  G++ KV +FGAF+   G     GL H S+++  RV     V  EGD V  
Sbjct: 1325 HDLKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKA 1384

Query: 673  KLLDFDDR-GKIKLSMKV 689
            K+L  D + GKI   +K 
Sbjct: 1385 KILKIDRKQGKISFGLKA 1402



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +  +  +VN + +G V KV D G FV         V +S LS   + +  D  + 
Sbjct: 1228 QDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  ++   D ++G++++ +K  V+D N   P+
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPV 1322



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G +V +   GA V F G+  G + +S++S   +   S   + G  V V  L  D    K+
Sbjct: 662 GTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKL 721

Query: 684 KLSMKV 689
            +S K 
Sbjct: 722 AVSCKD 727


>gi|300071231|gb|ADJ60631.1| general stress protein GSP13 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 143

 Score = 70.3 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC---------GARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFFLQNPETNEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
             +  +++D D+  GKI LS++ +++N 
Sbjct: 66  QKIMAQIIDIDEYNGKISLSIRSLEKNP 93


>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
 gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
          Length = 277

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 13/181 (7%)

Query: 295 FEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTL 354
             ++     RT               T R I  Q G+L    G+     G T+ I  V  
Sbjct: 25  LNNLLK---RTENAKGGGTSLEDGQNTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVD- 80

Query: 355 GTREDEQYVDSLSGTQR-----NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           G +E  +  D      +      +     N L  +    +     +R           A+
Sbjct: 81  GPKEITKSADVDPTEGQIYVFLKNISAESNSLSGSNSFSASNKESNR----IRNAIESAL 136

Query: 410 HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
             ++         + +   +   DG    A++  SSLAL+D+G+ +        + ++ D
Sbjct: 137 RSIVCLELFCKAQIDVEITVLNDDGGVLAASLIASSLALIDSGIQVYDVCVAAHIVMLTD 196

Query: 470 G 470
           G
Sbjct: 197 G 197



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 14/163 (8%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           R + ++TG +  Q  G V   +G T ++ +V   + +    D  P    + V  +  +  
Sbjct: 50  RSIVMQTGVLHDQ-KGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVFLKNISAE 108

Query: 70  VGKIPGGYLRRESRPTENEI-LISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSP 126
              + G         +  E   I   I+ ++R +       K +  V I V+  D     
Sbjct: 109 SNSLSGSN---SFSASNKESNRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGVLA 165

Query: 127 HVVSMVAASAALMLSGLP-FEGPVVGAQVDYINGQYVLNPRLD 168
              S++A+S AL+ SG+  ++  V    V   +G+ +++P + 
Sbjct: 166 --ASLIASSLALIDSGIQVYDVCVAAHIVMLTDGRIIVDPSIS 206


>gi|99036036|ref|ZP_01315074.1| hypothetical protein Wendoof_01000091 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 264

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEG 667
             +       V+ ++KG V  +  +G FV      +GLVH S+++  +     S +V  G
Sbjct: 13  PWQDAESKYPVDSVHKGYVTSIEGYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRG 72

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V+VK+L  D  + ++ LSMK    N  +
Sbjct: 73  QEVYVKILSIDIAKSRMSLSMKRCVDNPWQ 102



 Score = 38.7 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
             +   +      I  G+V         V           +G +++   S       SD 
Sbjct: 100 PWQVFINKYPPGSIVSGEVKNNTGSYVSVAFGDSEIDENVEGTIYVKDFSWS--KNGSDE 157

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +K    GD +  K++  + +R +I L +K ++ +  + ++
Sbjct: 158 IKKYNVGDKIEAKVIRANVNRARIYLGIKQIEYDPLEELI 197


>gi|170078958|ref|YP_001735596.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002]
 gi|169886627|gb|ACB00341.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002]
          Length = 296

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G VV +  +G FV   G   GL+H SQ+S + V +   +   G TV V + D ++  
Sbjct: 196 LVSGTVVNIKPYGVFVELDGMT-GLLHRSQISAKPVEQIEALFSIGQTVRVLITDIEESN 254

Query: 681 GKIKLSMKVVDQNTGKPI 698
            +I LS++ +++  G+ I
Sbjct: 255 NRISLSLQALEKFPGEVI 272


>gi|67473385|ref|XP_652459.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|67478768|ref|XP_654766.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56469313|gb|EAL47073.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56471839|gb|EAL49380.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 227

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 90/221 (40%), Gaps = 14/221 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR++  +R  + ++G++    GS L  + +++ I  V + T+++   +D       
Sbjct: 6   KRGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSVQIKTQDES--IDF------ 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            +F +   F      ++       R+E+    +  +++   + Q +     + +   + E
Sbjct: 58  -EFTVKVTFAQFGNNDL----LNKRKEVELQEILTQSLVSRINQESNKGKIICLQVFVME 112

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
            DGS   + +  SSLAL D+ + +   +    +  +   +  I+      +E   G +  
Sbjct: 113 QDGSVEDSIINSSSLALFDSEIQMDSIIIATTVVKLPIYNQVIVDPTALEEEKKEGSVLI 172

Query: 492 KVAGTDSGITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHI 531
               ++S IT + M   +      + + +AL    +    I
Sbjct: 173 ACIPSNSSITQIYMSGVLDPQDISSCLSIALDSCWKLNKEI 213



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 83/213 (38%), Gaps = 22/213 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGK 72
           R   ++ G I+  + G+ L     + V+++V   ++  +  DF F + V +         
Sbjct: 17  RATTIKIGVISG-AKGSCLIQKENSKVISSVQI-KTQDESIDFEFTVKVTF--------- 65

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII-NVMQHDLESSPHVVSM 131
               +   +      E+ +  ++ +S+    ++   N+ ++I   V   + + S     +
Sbjct: 66  --AQFGNNDLLNKRKEVELQEILTQSLVSRINQE-SNKGKIICLQVFVMEQDGSVEDSII 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYIN--GQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            ++S AL  S +  +  ++   V  +    Q +++P   E+   +GS+ L      ++ +
Sbjct: 123 NSSSLALFDSEIQMDSIIIATTVVKLPIYNQVIVDPTALEEEKKEGSV-LIACIPSNSSI 181

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
                +  L    +   +    + C  + + I 
Sbjct: 182 TQIYMSGVLDPQDISSCLSIALDSCWKLNKEIE 214


>gi|237737804|ref|ZP_04568285.1| LytB protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419684|gb|EEO34731.1| LytB protein [Fusobacterium mortiferum ATCC 9817]
          Length = 540

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +  +V +  + ++  +MDFG F++     DG V     S + V    D  K 
Sbjct: 433 KSPWEVALETYKVGQTVEKEIKNIMDFGLFLNLSKGVDGFVPAQMASKDFVKNLKDKFKV 492

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V  ++++ D ++ +IKLS+K ++    +
Sbjct: 493 GDVVKAQIVEIDKEKQRIKLSIKKIELEEER 523



 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVV 664
           R     + +   V  + +G+V K++ +G FV      +GL+H+S  +   +RV    + V
Sbjct: 262 RNPWDVVAETVGVGSVVEGKVTKLLPYGVFVEIADGVEGLIHMSDFTWNKKRV-NLGEFV 320

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           + GDTV V++L+F     K+KL +K + +N  
Sbjct: 321 QVGDTVKVRVLEFVPAERKLKLGIKQLCENPW 352



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           G   I   V+     +  + D   K  + S  +I   +E         +V  + + +V  
Sbjct: 142 GDNFIGKEVQLMIKDIQTEKDKKTKKITFSRKDITLQKEEQEFS--QLKVGDVVEAEVTD 199

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+DFG  V   G   G VHIS++S +++ K +D  K+GD +  +++  + ++  IKLS+K
Sbjct: 200 VLDFGLSVKI-GHLRGFVHISEISWKKLEKLTDEYKKGDIIKGEIISLEAEKKNIKLSIK 258

Query: 689 VVDQNTG 695
            + +N  
Sbjct: 259 ALTRNPW 265



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              +  +   V K    +V++V  FG F       D  +H S  + +   + +     GD
Sbjct: 351 PWDTAEERFAVGKELSAKVLEVKPFGLFAEVEPGVDVFIHQSDYNWQ--GEPNKKFSVGD 408

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           TV  K+++ + +  KIK S+K + ++  +
Sbjct: 409 TVDFKVIELNMEDNKIKGSIKALTKSPWE 437


>gi|189466315|ref|ZP_03015100.1| hypothetical protein BACINT_02689 [Bacteroides intestinalis DSM
           17393]
 gi|189434579|gb|EDV03564.1| hypothetical protein BACINT_02689 [Bacteroides intestinalis DSM
           17393]
          Length = 708

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I+ +M+K L  S  +L   T +   + I P++      +G   ++ I+++   K   D  
Sbjct: 561 IVEQMAKDLGCSVAEL--ITSKELRLKIQPEKYLTPT-VGMPTLKDILQELD-KPGRDPR 616

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G +K        I    + +R+I D+ E  ++  G V  + +FGAFV      +GLVH+S
Sbjct: 617 GPIK--------IFEFDKNVRTINDLHEGMEL-PGIVGNITNFGAFVDIGIKENGLVHLS 667

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           QL+   V+  +++V     V V++L  D DR +I L
Sbjct: 668 QLADRFVSDPNEIVSIHQHVRVRVLSVDTDRKRIAL 703


>gi|296233893|ref|XP_002762219.1| PREDICTED: exosome complex exonuclease RRP46-like [Callithrix
           jacchus]
          Length = 179

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 13/127 (10%)

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           GDT  +  V  G  E +          +  F    N          ++G P   E    R
Sbjct: 24  GDTSVLAGV-YGPAEVK--------VSKEIF----NKATLEVILRPKIGLPGVAEKSRER 70

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           L R     V+  T     ++ +V ++    GS     +  + +AL+DAGVP+     G+ 
Sbjct: 71  LIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVT 130

Query: 464 MGLVKDG 470
             L  DG
Sbjct: 131 CALDSDG 137



 Score = 44.1 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 18/141 (12%)

Query: 35  YGETVVLATVVYDRSLKDGQDFF---PLTVNYQERTYAVGKIPGGYLRRESRPTENEILI 91
            G+T VLA V     +K  ++ F    L V  + +                 P   E   
Sbjct: 23  SGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI--------------GLPGVAEKSR 68

Query: 92  SRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
            R+I  +   +        T + + +       S     + AA  AL+ +G+P      G
Sbjct: 69  ERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCG 128

Query: 152 AQVDY-INGQYVLNPRLDEDQ 171
                  +G  VL+P    ++
Sbjct: 129 VTCALDSDGTLVLDPTSKREK 149


>gi|253583194|ref|ZP_04860392.1| LytB protein [Fusobacterium varium ATCC 27725]
 gi|251833766|gb|EES62329.1| LytB protein [Fusobacterium varium ATCC 27725]
          Length = 540

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVV 664
           R       +   V+ I +G+V K++ +G FV      +GLVH+S  +   +RV   ++ V
Sbjct: 262 RNPWEVAAEQYAVDSIVEGKVTKILPYGVFVEIADGVEGLVHMSDFTWNKKRV-SLNEFV 320

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           + GDTV VK+++F     K+KL +K +  N  
Sbjct: 321 QLGDTVKVKIIEFQPAERKLKLGIKQLSANPW 352



 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +V  + + +V  V+DFG  +       G VHIS++S +++ K S+  K+G
Sbjct: 178 QKEEKEFAELKVGDVVEAEVADVLDFGLSLRL-QHLRGFVHISEVSWKKLDKLSEKYKKG 236

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V  K++  +   K +KLS+KV+ +N  +
Sbjct: 237 DKVEAKIISLEPEKKNVKLSIKVLTRNPWE 266



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            IVE    ++N +D+       +        +       +  +V +  + ++  +MDFG 
Sbjct: 408 DIVEFKVIELNTEDNKIKGSIKALR------KSPWEVALETYKVGETVEKEIKNIMDFGL 461

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           F++     DG +     S + V    D    G  V  ++++ D ++ +IKLS
Sbjct: 462 FINLSKGIDGFIPAQMASKDFVKNLKDKFTVGQVVKAQIVEIDKEKQRIKLS 513



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S  +   V    KG+V++V  FG F       D  +H S  + +           GD
Sbjct: 351 PWDSAAERYAVGTELKGKVLEVKPFGIFAEVEPGVDVFIHQSDFNWQGEENKK--FAAGD 408

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V  K+++ + +  KIK S+K + ++  +
Sbjct: 409 IVEFKVIELNTEDNKIKGSIKALRKSPWE 437


>gi|226291917|gb|EEH47345.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb18]
          Length = 1780

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++   D    K+  S    +                 +I  G+V  V +FGAF+   G  
Sbjct: 1254 RIIFVDAEANKLQMSLKESVLEPNYKAPITIRDLNRGQIVTGKVRSVEEFGAFIVIDGTA 1313

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H ++++ ++V     + ++GD V  K+L  D D+ +I L +K 
Sbjct: 1314 NLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKA 1362



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +VN I +G V +V + G FV         V IS LS   +       +    V  +++  
Sbjct: 1199 KVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSYLKDWQSEFQVDQLVHGRIIFV 1258

Query: 678  D-DRGKIKLSMK--VVDQNTGKPI 698
            D +  K+++S+K  V++ N   PI
Sbjct: 1259 DAEANKLQMSLKESVLEPNYKAPI 1282



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 3/125 (2%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKG 625
           G     IR   +     +         I  S+   ++ AR+         +  +     G
Sbjct: 749 GSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDFQEGSKVTG 808

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIK 684
            V  ++  G FV F     G +    +  + VAK         T+   +    DDR +  
Sbjct: 809 FVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQRFT 868

Query: 685 LSMKV 689
           LSMK 
Sbjct: 869 LSMKE 873



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V       GLV    LS  ++       +EG  V  ++L  + ++ +++L++K    
Sbjct: 579 GLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKKSLL 638

Query: 693 NTGKP 697
           N+  P
Sbjct: 639 NSESP 643


>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
           3638]
 gi|29336823|sp|Q8U0M0|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
 gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
          Length = 277

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 112/280 (40%), Gaps = 42/280 (15%)

Query: 296 EDIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV- 351
           ++I A ++R  +L+   +K R+D R  E  R I  +VG++++  GS+L   G+TQ +V  
Sbjct: 4   DEIVAGIMRDYILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGI 63

Query: 352 -VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA-- 408
             TLG    E + D+           +   +P A+      G P  R I   R+  R   
Sbjct: 64  KATLG----EPFPDT---PNMGVMTTNVELVPLASPTFEP-GPPDERAIELARVIDRGIR 115

Query: 409 ------IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI------- 455
                 +  ++    +    + I   + + DG+   A   G+  AL++A VP        
Sbjct: 116 ESRALNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEET 175

Query: 456 --------SKPVAG----IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
                    +P+      I++   K G+  ++  D + +E+ +      +   ++G  + 
Sbjct: 176 GEVEILEEKEPLPVEKIPISVTFAKIGNYLVV--DPTLEEEQIMDGRLTITTDETGHISA 233

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
               + G      ++ A++ A +    I   +   L ++ 
Sbjct: 234 VQKSEGGAFKLEEVMYAVETAFKKAEEIRKIILNALEKAN 273



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 47/247 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+++E G I + ++G+ L   G T VL  +    +L +    FP T N    T  V  +
Sbjct: 34  RPIEVEVGVIEK-AEGSALVKLGNTQVLVGI--KATLGEP---FPDTPNMGVMTTNVELV 87

Query: 74  PGGYLRRESR-PTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHDL 122
           P      E   P E  I ++R+IDR IR           +          + ++V+ HD 
Sbjct: 88  PLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRVVFIDVHVLDHDG 147

Query: 123 ESSPHVVSMVAASAALMLSGLP---FEGPVVGAQV------------------DYINGQY 161
            +    +  + A AAL+ + +P   +       ++                    I    
Sbjct: 148 -NLMDAIG-IGAIAALLNARVPKVLYNEETGEVEILEEKEPLPVEKIPISVTFAKIGNYL 205

Query: 162 VLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFG---HNECKPVI 215
           V++P L+E+Q   G L +    T     + + E      + V+ A+        E + +I
Sbjct: 206 VVDPTLEEEQIMDGRLTITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKII 265

Query: 216 -EAISKL 221
             A+ K 
Sbjct: 266 LNALEKA 272


>gi|15672876|ref|NP_267050.1| general stress protein GSP13 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723825|gb|AAK04992.1|AE006323_7 general stress protein GSP13 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 143

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC---------GARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFYLDNSSNKEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
             V  +++D D+  GKI LS++ +++N 
Sbjct: 66  QKVMAQIIDIDEYNGKISLSIRSLEKNP 93


>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
 gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
          Length = 217

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 76/211 (36%), Gaps = 8/211 (3%)

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
            ++G++ +  GSS     +T+ +   T+      Q  +     +         +   ++ 
Sbjct: 1   MKIGVVSQGSGSSYVEMENTKVLC--TIHGPRATQKTELF---ETAKLNCELKYTTFSST 55

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
                   + +E     L  ++I   +         + I   +   DG+  +A++  +++
Sbjct: 56  TEKIDYVENSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATM 115

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AL DAGV +   V+  ++   KD      L D +  E+ +      +      +  +   
Sbjct: 116 ALADAGVEMFDMVSSCSVSCTKDN---RTLIDPTTLEETIPSSSTVLVAKMPSLNEITQI 172

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           ++ G +    ++  +     G   I + M +
Sbjct: 173 IQTGELQYTNVLECVDLCIDGCDKIYSIMKQ 203



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 10/202 (4%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGY 77
           ++ G ++ Q  G+       T VL T+   R+ +  + F    +N + +           
Sbjct: 1   MKIGVVS-QGSGSSYVEMENTKVLCTIHGPRATQKTELFETAKLNCELKYTTFSSTTEKI 59

Query: 78  LRRE-SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASA 136
              E S+  +  +LIS+ I  SIR    K  K    + I V+  D      V S+ AA+ 
Sbjct: 60  DYVENSKEKDLSLLISQSIIGSIR--LEKYPKTAIDIYILVLNDDGNVL--VASITAATM 115

Query: 137 ALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDED---QGSLDLFVSGTQDAVLMVELEA 192
           AL  +G+     V    V    + + +++P   E+     S  L         +   ++ 
Sbjct: 116 ALADAGVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMPSLNEITQIIQT 175

Query: 193 NQLSEDVVLDAIIFGHNECKPV 214
            +L    VL+ +    + C  +
Sbjct: 176 GELQYTNVLECVDLCIDGCDKI 197


>gi|57087309|ref|XP_546833.1| PREDICTED: similar to homolog of yeast mRNA transport regulator 3
           [Canis familiaris]
          Length = 272

 Score = 69.9 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 77/231 (33%), Gaps = 12/231 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ------ 370
           RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E                
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGSERGGGPAGAGGEAP 89

Query: 371 ---RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
              R   +  +   P A G   R       E       + A+ P +         L + +
Sbjct: 90  AALRGRLLCDFRRAPFA-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSA 148

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            + E  GS+  A +  ++LAL DAGV +   V G  +    +      L D +  E+   
Sbjct: 149 LLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSRTPE-PAPTWLLDPTRLEEERA 207

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
                VA          +     G        A++    G   +   + + 
Sbjct: 208 AAGLTVALMPVLNQVAGLLGSGEGGPPESWAEAVRLGLEGCQRLYPVLQQC 258



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 74/210 (35%), Gaps = 27/210 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---------------LTVNYQERTYAV 70
           Q+ G+     G T VL  V   R  +  +                   L  +++   +A 
Sbjct: 48  QAKGSAYLEAGGTKVLCAVSGPRQAEGSERGGGPAGAGGEAPAALRGRLLCDFRRAPFA- 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                G  RR       E  ++  +  ++ P          Q+ ++ +  +   S    +
Sbjct: 107 -----GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAA 161

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYING---QYVLNPR-LDEDQGSLDLFVS--GTQDA 184
           + AA+ AL  +G+     VVG  +         ++L+P  L+E++ +  L V+     + 
Sbjct: 162 LTAAALALADAGVEMYDLVVGCGLSRTPEPAPTWLLDPTRLEEERAAAGLTVALMPVLNQ 221

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPV 214
           V  +         +   +A+  G   C+ +
Sbjct: 222 VAGLLGSGEGGPPESWAEAVRLGLEGCQRL 251


>gi|126179994|ref|YP_001047959.1| translation initiation factor IF-2 subunit alpha [Methanoculleus
           marisnigri JR1]
 gi|125862788|gb|ABN57977.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanoculleus marisnigri JR1]
          Length = 259

 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++    V  V DF AFV      +  GL+ IS+++   +    D V+EG  V  K+
Sbjct: 7   PEEGELVVCTVADVKDFAAFVTLDEYNERRGLIPISEIARGWIKYIRDFVREGQKVVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKP 697
           L+ D DRG I LS+K V+++  + 
Sbjct: 67  LNVDPDRGHIDLSLKDVNEHQRRE 90


>gi|260583487|ref|ZP_05851235.1| general stress protein 13 [Granulicatella elegans ATCC 700633]
 gi|260158113|gb|EEW93181.1| general stress protein 13 [Granulicatella elegans ATCC 700633]
          Length = 130

 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +T    +  +   +V  V  +G F+       GL+HIS+     +    + VK G+ V  
Sbjct: 1   MTQTYRIGDVITAKVTGVQPYGIFLALDEETQGLIHISECKHGYMDNVHNFVKIGEEVTA 60

Query: 673 KLLDFDDRG-KIKLSMKVVDQ 692
           K++D D+   KI LS++ +++
Sbjct: 61  KVIDVDEFTDKISLSIRALEK 81


>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
          Length = 261

 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 11/176 (6%)

Query: 328 QVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGE 387
           +VG++    GS+    G+T+AIV V    RE              +    + F P A+  
Sbjct: 11  KVGVVSTAKGSAYIELGNTKAIVSV-FDPRE---IPKQSKYCALGELYCDFKFSPFASH- 65

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
           + +      R          A++P + +       L + + + E DGS   A +  + LA
Sbjct: 66  LRKTPQSDTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGLA 125

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           L DA +P+   V     G++ D     IL D + +E+ L          + GI  +
Sbjct: 126 LADACIPMFDIVTATTAGILGD----RILVDPTAEEERLCM--EGFTRDNHGIVML 175



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 9   IEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL---TVNYQE 65
           ++   R   L+ G ++  + G+     G T  + +V   R +     +  L     +++ 
Sbjct: 1   MKLLQRMCILKVGVVST-AKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKF 59

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ--VIINVMQHDLE 123
             +A       +LR+  +       ++  +  ++ P   +      Q  V  NV++ D  
Sbjct: 60  SPFA------SHLRKTPQSDTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGS 113

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQD 183
               V  + AA  AL  + +P    V       +  + +++P  +E++  ++   +    
Sbjct: 114 VLAAV--ITAAGLALADACIPMFDIVTATTAGILGDRILVDPTAEEERLCME-GFTRDNH 170

Query: 184 AVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDFSKLEEE 243
            ++M+   A   + D V +    G    + +  A ++L   C ++  ++     SK++  
Sbjct: 171 GIVML---AKLPTLDQVPEIRHSGSVSVETLWRACTRLNAACTEQVPIVQHVLVSKVKSR 227

Query: 244 MSQM 247
           ++++
Sbjct: 228 LAEI 231


>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
 gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
          Length = 283

 Score = 69.9 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 15/171 (8%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V   ++  V+R ++ ++ VR+D R     R++S +VG+++   GSSL   G+T+ +  
Sbjct: 8   KGVIPKLKQDVMRKMI-EQGVRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGNTKVMAG 66

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--- 408
           V     + E              +++    P A+ ++   G P    I   R+  RA   
Sbjct: 67  V-----KVEVGKPFEDTPDEGALIVNLEIAPAASPDIEP-GPPDENAIEIARVVDRAIRH 120

Query: 409 -----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
                   +   T +  + L +   +   DG+   A+   +  ALM+  +P
Sbjct: 121 SGFLNFKSLSIVTGRHAWFLWVDIYVLNHDGNLVDASTIAAITALMNTALP 171



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 52/231 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVG 71
           R L +  G + R +DG+ L + G T V+A V  +  +  +D  D   L VN +    A  
Sbjct: 38  RELSIRVGVV-RTADGSSLVSLGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPAASP 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN--ETQVI-----------INVM 118
            I  G       P EN I I+R++DR+IR      + N     ++           I V+
Sbjct: 97  DIEPGP------PDENAIEIARVVDRAIR---HSGFLNFKSLSIVTGRHAWFLWVDIYVL 147

Query: 119 QHDLESSPHVVSMVAASAALMLSGLPF--EGPVVGA-QVDYINGQY-------------- 161
            HD  +     S +AA  ALM + LP     P     ++D  N                 
Sbjct: 148 NHDG-NLVD-ASTIAAITALMNTALPKVELDPAGNILRIDRSNKSPLALNVDKLPLTITH 205

Query: 162 -------VLNPRLDEDQGSLDLFVSGTQDA-VLMVELEANQLSEDVVLDAI 204
                  +++P  +E+  S  ++++G     V+ ++      ++D V   I
Sbjct: 206 AKLGNFLLVDPTREEEDLSDGIYITGIAGGNVVAIQKVTGAFTKDEVNYMI 256


>gi|219114931|ref|XP_002178261.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409996|gb|EEC49926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 284

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           + ++           +  G V  +  +GAFV   G   GL+HISQ+S +R+     V++ 
Sbjct: 176 KAVVEQQMADLSRGDLVAGMVKALKPYGAFVEVGGM-SGLLHISQISYDRIDDLEKVLQP 234

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G  V   ++D D   G+I LS K ++   G
Sbjct: 235 GMQVKCMIIDHDKVNGRIALSTKTLEPEPG 264


>gi|326406439|gb|ADZ63510.1| general stress protein GSP13 [Lactococcus lactis subsp. lactis
           CV56]
          Length = 143

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC---------GARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFYLDNSSNKEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
             V  +++D D+  GKI LS++ +++N 
Sbjct: 66  QKVMAQIIDIDEYNGKISLSIRSLEKNP 93


>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
          Length = 220

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 89/236 (37%), Gaps = 22/236 (9%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M+++   +D      +R ++ ++ LL R+ GS++F++GDT  +                +
Sbjct: 1   MVEEDTEIDC----VLRPMNCEINLLSRSDGSTMFMQGDTTIVA--------------GI 42

Query: 367 SGT-QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
           +G  +     M Y+ L          G     +       R +    +  +      + I
Sbjct: 43  NGPMEVKSQKMAYDKLSIEVTYTPLTGPAKVDDRLIETYIRESCESAILVSLHPNTMICI 102

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             +  +  G      +  S LAL+++G+ +   +A ++  + K+    I+  D +  ++ 
Sbjct: 103 NLQEVQDSGGLLACAINASCLALINSGLSMKFTIAAVSCMIEKETGKIIMDPDNTQLKNA 162

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                +     +  I        +G  S++  + ++ + K+    I +   ++  +
Sbjct: 163 KAEFTYAFDSINKDIVCCH---SVGRFSQSEFLASVDKCKQVSQFIFDFYREITKK 215



 Score = 45.3 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 24/221 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAV 70
           RP+  E   ++R SDG+ +   G+T ++A +      +S K   D   + V Y       
Sbjct: 13  RPMNCEINLLSR-SDGSTMFMQGDTTIVAGINGPMEVKSQKMAYDKLSIEVTY------- 64

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                G  + + R      LI   I  S            T + IN+ +          +
Sbjct: 65  -TPLTGPAKVDDR------LIETYIRESCESAILVSLHPNTMICINLQEVQDSGGLLACA 117

Query: 131 MVAASAALMLSGLPFEGPVVGAQ--VDYINGQYVLNPRLDEDQ-GSLDLFVS--GTQDAV 185
           + A+  AL+ SGL  +  +      ++   G+ +++P   + +    +   +       +
Sbjct: 118 INASCLALINSGLSMKFTIAAVSCMIEKETGKIIMDPDNTQLKNAKAEFTYAFDSINKDI 177

Query: 186 LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           +         S+   L ++       + + +   ++ K  A
Sbjct: 178 VCCHSVGRF-SQSEFLASVDKCKQVSQFIFDFYREITKKYA 217


>gi|289582158|ref|YP_003480624.1| translation initiation factor 2, subunit alpha [Natrialba magadii
           ATCC 43099]
 gi|289531711|gb|ADD06062.1| translation initiation factor 2, alpha subunit [Natrialba magadii
           ATCC 43099]
          Length = 266

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G++ ++ DFG FV      D  GL+HIS++++  +    D V+EG     K+
Sbjct: 7   PDPGELVVGKIDEIEDFGVFVDLEEYEDKRGLIHISEVASGWIKNVRDHVREGQIAVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVD 691
           LD D +  +I LS+K V+
Sbjct: 67  LDVDKESQQIDLSLKDVN 84


>gi|115447329|ref|NP_001047444.1| Os02g0617700 [Oryza sativa Japonica Group]
 gi|113536975|dbj|BAF09358.1| Os02g0617700 [Oryza sativa Japonica Group]
          Length = 322

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 593 VKIASSSLAEIEAAREMIRSIT-DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           V I + +   ++ A E +  +     EV + YKG V  + ++GAFV F G + GL+HIS+
Sbjct: 1   VTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISE 60

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           LS ++V+K SDVV  G  + +  +  D RG IKLS+K 
Sbjct: 61  LSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKA 98


>gi|294496353|ref|YP_003542846.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanohalophilus mahii DSM 5219]
 gi|292667352|gb|ADE37201.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanohalophilus mahii DSM 5219]
          Length = 265

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV       V  V DFGA+        ++G +HIS++    V    D V+EG  +  K+
Sbjct: 7   PEVGDFVVCAVKNVTDFGAYTTLEEYDGKEGFIHISEIKAGWVKYVRDYVREGQKIVCKV 66

Query: 675 LDFDDRGK-IKLSMKVVDQNTGK 696
           L  D   + I LS+K V+++  +
Sbjct: 67  LRVDTSRRHIDLSLKDVNEHQKR 89


>gi|257467703|ref|ZP_05631799.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317061996|ref|ZP_07926481.1| LytB protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687672|gb|EFS24507.1| LytB protein [Fusobacterium ulcerans ATCC 49185]
          Length = 540

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST--ERVAKTSDVV 664
           R       +   V+ + +G+V K++ +G FV      +GLVH+S  +   +RV   ++ V
Sbjct: 262 RNPWEVAAEQYAVDSVVEGKVTKILPYGVFVEIADGVEGLVHMSDFTWNKKRV-SLNEFV 320

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           + GDTV VK+++F     K+KL +K +  N  
Sbjct: 321 QLGDTVKVKIIEFQPAERKLKLGIKQLSANPW 352



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +V  + + +V  V+DFG  +       G VHIS++S +++ K +D  K+G
Sbjct: 178 QKEEKEFAELKVGDVVEAEVADVLDFGLSLRL-QHLRGFVHISEVSWKKLDKLTDKYKKG 236

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V  K++  +   K +KLS+KV+ +N  +
Sbjct: 237 DKVEAKIISLEPEKKNVKLSIKVLTRNPWE 266



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +  +V +  + ++  +MDFG FV+     DG V     S + V    D    
Sbjct: 433 KSPWEVALETYKVGETVEKEIKNIMDFGLFVNLSKGIDGFVPAQMASKDFVKNLKDKFTV 492

Query: 667 GDTVWVKLLDFD-DRGKIKLS 686
           G  V  ++++ D ++ +IKLS
Sbjct: 493 GQVVKAQIVEIDKEKQRIKLS 513



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S  +   V    KG+V++V  FG F       D  +H S  + +           GD
Sbjct: 351 PWDSAAERYAVGTELKGKVLEVKPFGIFAEVEPGVDVFIHQSDFNWQGEENKK--FAAGD 408

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V  K+++ + +  KIK S+K + ++  +
Sbjct: 409 VVEFKVIELNTEDNKIKGSIKALRKSPWE 437


>gi|167382557|ref|XP_001736162.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165901601|gb|EDR27679.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 227

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 90/221 (40%), Gaps = 14/221 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR++  +R  + ++G++    GS L  + +++ I  V + T+++   +D       
Sbjct: 6   KRGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSVQIKTQDES--IDF------ 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            +F +   F       +      +R+EI    +  +++   + Q +     + +   + E
Sbjct: 58  -EFTVKVTFAQFENNSL----FNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFVME 112

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
            DGS   + +  SSLAL DA + +   +    +  +   +  I+      +E   G +  
Sbjct: 113 QDGSVEDSIINSSSLALFDAEIQMDSIIIATTVVKLPIYNQVIVDPTAFEEEKKEGSVLI 172

Query: 492 KVAGTDSGITAMQMDMKIGGIS-ENIMVMALQQAKRGRLHI 531
               ++S IT + M   +      + + +AL    +    I
Sbjct: 173 ACIPSNSSITQIYMSGVLDPQDISSCLSIALDSCWKLNKEI 213



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 90/221 (40%), Gaps = 25/221 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGK 72
           R   ++ G I+  + G+ L     + V+++V   ++  +  DF F + V     T+A  +
Sbjct: 17  RATTIKIGVISG-AKGSCLIQKENSKVISSVQI-KTQDESIDFEFTVKV-----TFAQFE 69

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII-NVMQHDLESSPHVVSM 131
               +  R       EI +  ++ +S+    ++   N+ ++I   V   + + S     +
Sbjct: 70  NNSLFNNR------KEIELQEILTQSLTSRINQE-SNKGKIICLQVFVMEQDGSVEDSII 122

Query: 132 VAASAALMLSGLPFEGPVVGAQVDYIN--GQYVLNPRLDED---QGSLDLFVSGTQDAVL 186
            ++S AL  + +  +  ++   V  +    Q +++P   E+   +GS+ L      ++ +
Sbjct: 123 NSSSLALFDAEIQMDSIIIATTVVKLPIYNQVIVDPTAFEEEKKEGSV-LIACIPSNSSI 181

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPV---IEAISKLAKM 224
                +  L    +   +    + C  +   IE I +  K+
Sbjct: 182 TQIYMSGVLDPQDISSCLSIALDSCWKLNKEIELIIQSKKV 222


>gi|194740918|ref|XP_001952937.1| GF17467 [Drosophila ananassae]
 gi|190625996|gb|EDV41520.1| GF17467 [Drosophila ananassae]
          Length = 234

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 16/176 (9%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R +  +   L R  GS ++ +G +  I  V LG  E +    S+ G+      +  N
Sbjct: 12  DQLRRMHCEFNPLSRCDGSVMYSQGASVVISAV-LGPVEVKSQNLSIDGSY-----LECN 65

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A       G P  +E       +  +   +   A     + I  +  E  GS    
Sbjct: 66  YRPKA-------GLPQVKERLREAAIKDILDLTVLSEAYPRSKMSIQVQELEDRGSMDAC 118

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
            V  + LA++  G+P+    A +   ++ +  D++   D    E       F  A 
Sbjct: 119 AVNSACLAMLIGGLPLKCSFAAVHC-IIDEQGDYV--LDPDHSETAHQRASFTFAF 171



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 21/178 (11%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+V+ + G +VV++ V+    +K      D   L  NY+ +                 P
Sbjct: 28  DGSVMYSQGASVVISAVLGPVEVKSQNLSIDGSYLECNYRPKA--------------GLP 73

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E L    I   +           +++ I V + +   S    ++ +A  A+++ GLP
Sbjct: 74  QVKERLREAAIKDILDLTVLSEAYPRSKMSIQVQELEDRGSMDACAVNSACLAMLIGGLP 133

Query: 145 FEGPVVGAQ-VDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVLMVELEANQLSED 198
            +        +    G YVL+P   E    + S        +  +L+++ +     E 
Sbjct: 134 LKCSFAAVHCIIDEQGDYVLDPDHSETAHQRASFTFAFDSMEGNLLLIQTKGAFKIEQ 191


>gi|171780107|ref|ZP_02921011.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281455|gb|EDT46890.1| hypothetical protein STRINF_01895 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 710

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 13/138 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           A+    +   IG+G + ++ I+        ++ DD    +    + +I            
Sbjct: 582 AVSVKDMAETIGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLDIS----------- 630

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             E+ +  +G V  V+DFGAFV      DGL+HISQ+S   V   S VV  GD V V + 
Sbjct: 631 DLEIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSVGDVVTVWVS 690

Query: 676 DFD-DRGKIKLSMKVVDQ 692
             D +RGKI LS+  + +
Sbjct: 691 KIDKERGKINLSLVDLRE 708


>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
          Length = 260

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 32/264 (12%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            V EDI+   V  ++ +K  R DGR     RDI  +  L+++  GS+    GDT  +V V
Sbjct: 4   EVIEDIRKDYVYDLI-EKGKRADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGV 62

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA---- 408
            +       + D+     +   M +   +P A+ E    G P+   I   R+  R     
Sbjct: 63  KVEPG--APFPDT---PNKGILMTNAELVPLASPEFES-GPPNEDSIELARVVDRGIRGS 116

Query: 409 ----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---------- 454
               +  +  +  +  + + I     ++DG+   A   G+  +L++  +P          
Sbjct: 117 ETIDLEKLCIEEGEKVWMVFIDIHTLDNDGNLVDAAALGAITSLLNVTIPYERYGLTGED 176

Query: 455 ---ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
              I      + +  +       +L D +  E+        V     G  +        G
Sbjct: 177 TLQIRDTPVAVTVVEI----GGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSGSTG 232

Query: 512 ISENIMVMALQQAKRGRLHILNEM 535
           ++E  +V  ++        I  + 
Sbjct: 233 LTEEKIVKMIEIGIEKAREIREKY 256



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 33/227 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +E   I +++DG+     G+TVVL  V     ++ G  F P T N          +
Sbjct: 33  RDIIVERDLI-KKADGSTRVQIGDTVVLVGV----KVEPGAPF-PDTPNKGILMTNAELV 86

Query: 74  P-GGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVM----QHDLES 124
           P          P E+ I ++R++DR IR        K    E + +  V       D + 
Sbjct: 87  PLASPEFESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMVFIDIHTLDNDG 146

Query: 125 SPHVVSMVAASAALMLSGLPF--------------EGPVVGAQVDYINGQYVLNPR-LDE 169
           +    + + A  +L+   +P+              + PV    V  I G  +++P   +E
Sbjct: 147 NLVDAAALGAITSLLNVTIPYERYGLTGEDTLQIRDTPV-AVTVVEIGGNLLVDPNVYEE 205

Query: 170 DQGSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
              +  L V    D  +  + +  +  L+E+ ++  I  G  + + +
Sbjct: 206 SAATSKLTVISNADGSISGLQKSGSTGLTEEKIVKMIEIGIEKAREI 252


>gi|302687680|ref|XP_003033520.1| hypothetical protein SCHCODRAFT_82121 [Schizophyllum commune H4-8]
 gi|300107214|gb|EFI98617.1| hypothetical protein SCHCODRAFT_82121 [Schizophyllum commune H4-8]
          Length = 1147

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTE-RVAKTSDVVKEGDTVW 671
            P V KIY G+V  V DFGAFV      G  +G+VH+S +    R+   +D++     V 
Sbjct: 187 RPVVFKIYDGKVTGVKDFGAFVQLEGIAGRAEGMVHVSNIQKGVRINSAADLLSRNQPVK 246

Query: 672 VKLLDFDDRGKIKLSMKV 689
           VK++      +I LSMK 
Sbjct: 247 VKVMAVAGS-RITLSMKD 263


>gi|168030832|ref|XP_001767926.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680768|gb|EDQ67201.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 299

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           +    K+   ++ T ++  S    +  A         + E   +Y+G+V  V DFGAFV 
Sbjct: 71  DFISVKIIEANETTRRLIFSEKQAVLEA------NLRLLEEGLVYEGKVNSVTDFGAFVD 124

Query: 639 --FCGARD---GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
                      GLV  S+LS   V    D+ + G +V VK+L  D ++  + LS+K +  
Sbjct: 125 VVLPDGTSSVRGLVRTSELSWNPVRNPRDICEIGQSVRVKILQLDKEKSHLYLSIKQLQD 184

Query: 693 NT 694
           + 
Sbjct: 185 DP 186


>gi|299782837|gb|ADJ40835.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 725

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              D  +     +G V  V+DFGAF+      DGLVH+S+++ +       ++  GD V 
Sbjct: 640 MTMDDLKPGMQLEGTVRNVVDFGAFIDIGVKHDGLVHLSRMAKKYPKDPHSLLAVGDIVT 699

Query: 672 VKLLDFDD-RGKIKLSM 687
           V +   D  R +I+L+M
Sbjct: 700 VWVHAVDKQRDRIQLTM 716


>gi|262038294|ref|ZP_06011683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Leptotrichia
           goodfellowii F0264]
 gi|261747686|gb|EEY35136.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Leptotrichia
           goodfellowii F0264]
          Length = 517

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++          +     G+V KV+DFG  V+  G   G +HIS+L     A      KE
Sbjct: 160 KKEEEGYLKSINIGDTLTGEVKKVLDFGIIVNL-GVTTGFIHISELGWHHGADALKNYKE 218

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           GD +  K++D D+  K +KLS+K + +N  
Sbjct: 219 GDKIEAKVIDIDNEKKSVKLSVKQLSENPW 248



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++      S              S+ +  ++  I +  V +V +FG  +      +
Sbjct: 227 IDIDNEKKSVKLSVKQLSEN----PWNSVKEKYKIGDILEKDVSEVFEFGLLIELEKDIE 282

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKPI 698
           GL+H+S L+  RV+  +   K+GD +  K++ F D++ ++ LS K +  +    I
Sbjct: 283 GLLHVSDLAYRRVSNLNSKYKKGDVIKFKIIGFNDEKNRLSLSAKALFDDMWDKI 337



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V ++G F+      +  +H ++ S +R        K GD V  K++  D +  KI  S+
Sbjct: 353 NVQEYGIFLEIREGVEVFIHKNEFSWDRNENIK--FKVGDEVEFKIISLDKNEKKIGGSI 410

Query: 688 KVVDQNTGKP 697
           K +  +  K 
Sbjct: 411 KQLTVSPWKE 420



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             +   +  ++    K  +V++ + G  V      +G+V   +L+ E +   S+    GD
Sbjct: 417 PWKEAAEQYKIGNKVKVPIVEIQENGVLVKLTDRFNGMVPKKELTDEFLKDISEKFSVGD 476

Query: 669 TVWVKLLDFDDRGK-IKLS 686
            V   + + +++ K I LS
Sbjct: 477 EVEAVITETNEKRKSIILS 495


>gi|77920263|ref|YP_358078.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
 gi|77546346|gb|ABA89908.1| SSU ribosomal protein S1P [Pelobacter carbinolicus DSM 2380]
          Length = 399

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           +    V ++  ++ E E AR+       + E   + KG V  + DFGAF+   G  +GL+
Sbjct: 173 EQGRNVVVSHRAILEEERARQRETLRETLQEG-MVVKGTVTSLRDFGAFIDI-GGLEGLL 230

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            IS++S  RV    DV+  G  + + +   D    +   S++    +  
Sbjct: 231 PISEISYGRVENIEDVLHVGQELELAIKKLDWQADRFSFSLRDTQADPW 279



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            + I +V+ +G ++   I +                  S       A    +  T   E 
Sbjct: 240 VENIEDVLHVGQELELAIKKLDWQ----------ADRFSFSLRDTQADPWSKVGTLYMEG 289

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFD 678
           +  + G V ++ +FGAFV      DGL+HIS+L    R+    +V++ G  + V +   D
Sbjct: 290 ST-HTGTVARLANFGAFVTLEEGVDGLIHISKLGGGRRINHPREVLEVGQQLLVTIEQVD 348

Query: 679 -DRGKIKL 685
            ++ +I L
Sbjct: 349 REQHRISL 356


>gi|34851927|ref|XP_226471.2| PREDICTED: exosome component 6 [Rattus norvegicus]
 gi|109508906|ref|XP_001077520.1| PREDICTED: exosome component 6 [Rattus norvegicus]
          Length = 312

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 12/198 (6%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++      RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E        
Sbjct: 63  EEDETPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGGGP 121

Query: 369 TQ---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                      R   +  +   P + G   R    S  +   G   + A+ P +      
Sbjct: 122 AGAGGEAPAALRGRLLCDFRRAPFS-GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYP 180

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDI 479
              L + + + E  GS+  A +  ++LAL DAGV +   V G  + L   G     L D 
Sbjct: 181 RAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLTP-GPSPTWLLDP 239

Query: 480 SGDEDHLGHMDFKVAGTD 497
           +  E+        VA   
Sbjct: 240 TRLEEEHSEAGLTVALMP 257



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 75/210 (35%), Gaps = 27/210 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---------------LTVNYQERTYAV 70
           Q+ G+     G T VL  V   R  + G+                   L  +++   ++ 
Sbjct: 88  QAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFS- 146

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                G  RR  + +  +  +   +  ++ P          Q+ ++ +  +   S    +
Sbjct: 147 -----GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAA 201

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDYING---QYVLNPR-LDEDQGSLDLFVS--GTQDA 184
           + AA+ AL  +G+     VVG  +    G    ++L+P  L+E+     L V+     + 
Sbjct: 202 LTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSEAGLTVALMPVLNQ 261

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPV 214
           V  +         +   DA+  G   C+ +
Sbjct: 262 VAGLLGSGEGGQTESWTDAVRLGLEGCQRL 291


>gi|119191894|ref|XP_001246553.1| hypothetical protein CIMG_00324 [Coccidioides immitis RS]
          Length = 1829

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    K+  +                   +  +I  G+V KV +FGAFV   G  
Sbjct: 1296 RITLVDTEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTGKVRKVEEFGAFVSIDGTA 1355

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++  +V     + ++GD V  K+L  D  + +I L +K 
Sbjct: 1356 NLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQISLGLKA 1404



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G  V + + GA + F GA  G + +S++S   +   S     G  V V  L  D ++G++
Sbjct: 666 GTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRL 725

Query: 684 KLSMKV 689
            +S K 
Sbjct: 726 VVSCKD 731



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 608  EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +   +  D  +VN I +G V +V D G FV         V +S LS   + +  D  +  
Sbjct: 1231 DPEIASIDRLKVNDIVRGFVRRVADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQDEFQID 1290

Query: 668  DTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
              V  ++   D +  K+++++K   +D +   P+
Sbjct: 1291 QIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPL 1324



 Score = 38.7 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           G  V       GLV    ++  ++       +EG  V  ++L  + ++ +++L++K
Sbjct: 586 GLLVSLADGISGLVPGMHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLK 641



 Score = 37.2 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 598 SSLAEIEAAREM--IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           S+   ++AA E   + +  +  ++N    G V  + D G FV F G   G +    +  E
Sbjct: 821 SNKPSLKAALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDE 880

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            + K         ++   +   D D  +  L+M
Sbjct: 881 HLTKADFGFMRTQSISCSVSSIDQDAQRFILTM 913


>gi|257453282|ref|ZP_05618581.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
           domain protein [Fusobacterium sp. 3_1_5R]
 gi|317059815|ref|ZP_07924300.1| LytB protein [Fusobacterium sp. 3_1_5R]
 gi|313685491|gb|EFS22326.1| LytB protein [Fusobacterium sp. 3_1_5R]
          Length = 545

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 12/140 (8%)

Query: 558 IPPDQIRNVIGMGGKVI-RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I       ++G    VI + I + +  K +     + K  +      E A+         
Sbjct: 143 INEKDGEAMVGKNIDVIVKDIKQDSRDKRSKKITFSKKDITLMKEGEEFAK--------- 193

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             V  +    V  +MDFG  V     R G +HIS++S +R+    D+   G TV  K+L 
Sbjct: 194 LTVGDVVTCTVSGIMDFGLSVMIDHLR-GFIHISEVSWKRLDDLRDLYTVGQTVEAKILS 252

Query: 677 FDDRGK-IKLSMKVVDQNTG 695
            D+  K IKLS+K +  N  
Sbjct: 253 LDEEKKNIKLSIKQLTTNPW 272



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            +G+V +V+ +GAFV      +GLVHIS  +  ++     +  K G+TV VK+L+F+  G
Sbjct: 285 VEGKVTRVLAYGAFVELTEGVEGLVHISDFAWNKKRINMEEYAKVGETVKVKILEFNPEG 344

Query: 682 K-IKLSMKVVDQNTG 695
           + +KL  K + +N  
Sbjct: 345 RKLKLGFKQLVENPW 359



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +       +  +V    + ++  +MDFG FV      DG +     S + V    D  + 
Sbjct: 440 KSPWDKAMEEYKVGTTVEKKIKNIMDFGLFVELSKGIDGFIPTQFASKDFVKDLKDKFEI 499

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVD 691
           G  V  ++++ + +  KIKLS+K ++
Sbjct: 500 GQVVKAQIVEINQETQKIKLSIKKIE 525



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
               ++ +  FG F       D  VH S              + GD++  K+L+ + +  
Sbjct: 372 LTATILDIKPFGLFAEIESGVDVFVHSSDFGW--PGDEPANYQVGDSISFKVLELNVEDK 429

Query: 682 KIKLSMKVVDQNTG 695
           KIK S+K + ++  
Sbjct: 430 KIKGSIKALKKSPW 443


>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
          Length = 149

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M++   R DGR+   +R  +     L R HGS+ + +GDT  ++    G +       + 
Sbjct: 1   MMEGGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDT-VVLAAVYGPKSG-----TR 54

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIV 426
            G       +   + P       + G   R+E  +    +R +  +   T     T  +V
Sbjct: 55  KGENPEKASIEVVWKP-------KTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVV 107

Query: 427 SEIT 430
            ++ 
Sbjct: 108 LQVM 111


>gi|150399757|ref|YP_001323524.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           vannielii SB]
 gi|150012460|gb|ABR54912.1| translation initiation factor 2, alpha subunit [Methanococcus
           vannielii SB]
          Length = 265

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V  V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  K+
Sbjct: 6   PEEGDIVIGNVTDVKAFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKV 65

Query: 675 LDFDD-RGKIKLSMK-VVDQN 693
           +  +  + +I LS+K   DQ 
Sbjct: 66  MRVNPGKNQIDLSLKRATDQQ 86


>gi|323706501|ref|ZP_08118061.1| Tex-like protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534163|gb|EGB23954.1| Tex-like protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 712

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 607 REMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           + ++RS     E  K+     G V  V+DFG FV      DGLVHIS++S + +    DV
Sbjct: 627 KPILRSDVMTIEELKVGMELMGTVRNVVDFGCFVDIGVHTDGLVHISEMSQKYINHPLDV 686

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  GD V V+++D D +R +I LSMK
Sbjct: 687 VSVGDVVKVRVIDVDVERNRISLSMK 712


>gi|262276736|ref|ZP_06054529.1| 30S ribosomal protein S1 [alpha proteobacterium HIMB114]
 gi|262223839|gb|EEY74298.1| 30S ribosomal protein S1 [alpha proteobacterium HIMB114]
          Length = 570

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ID+     IAS      +   +    +    +V  + +G +  V  +G FV    + D
Sbjct: 170 IKIDNVRMNVIASRRQVIEQEKNKNKEKVIKNYKVGDVVEGTIKAVQSYGCFVSI-ESLD 228

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPI 698
            L+H S++S  +++  +D+   G+ + VK+L+ D+   ++ LS+K +  +  + I
Sbjct: 229 CLLHSSEVSHLKISNLNDMFTVGEKIKVKVLEIDNENMRMSLSVKAMLPDPFETI 283



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   KV   D+  ++++ S  A +    +   +I D   +   Y+ ++VK+ DFGAF  
Sbjct: 252 EKIKVKVLEIDNENMRMSLSVKAMLP---DPFETIKDKFSIGNEYEVKIVKLTDFGAFAE 308

Query: 639 FCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
                 GL+H S++   ++        K GDTV VKL + D ++ KI LS K    N 
Sbjct: 309 MQEGIVGLIHTSEIKHMQKNVNPKSAFKIGDTVKVKLKEVDTEKRKIALSYKDCLPNP 366



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR- 643
           ++I DD            I A ++   S  D  ++  I   +VV+V D G  V     R 
Sbjct: 433 IDIKDD-------KVNGSIRALKKDPFSFFDDKKIGDIVSTRVVEVQDNGLKVDVGPERY 485

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
             ++  S+L+ E+  +  +    GD++   +L+ D ++ ++KLS+K ++Q      +
Sbjct: 486 QTIIRKSELALEKSDQRPNRFSSGDSIDAAILELDAEKRRVKLSVKKLEQQQADEAI 542



 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 632 DFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           DFG F +      D  VH  QL     +K  D   +GD V +K++D  D  K+  S++ +
Sbjct: 389 DFGIFCNTGDNDIDIFVHYKQLDYAESSKALDNFNKGDEVELKIIDIKDD-KVNGSIRAL 447

Query: 691 DQNT 694
            ++ 
Sbjct: 448 KKDP 451


>gi|116494733|ref|YP_806467.1| transcriptional accessory protein [Lactobacillus casei ATCC 334]
 gi|116104883|gb|ABJ70025.1| Transcriptional accessory protein [Lactobacillus casei ATCC 334]
          Length = 725

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 606 AREMIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           A  ++R      E  K+    +G V  V+DFGAFV      DGLVH+S+++ + V     
Sbjct: 634 AAPILRQDVLTMEDLKVGMKLEGTVRNVVDFGAFVDIGVKHDGLVHVSKMARKFVRDPKT 693

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSM 687
           VV  GD V V +   D  R +I+L+M
Sbjct: 694 VVAIGDIVEVWIELVDLARERIQLTM 719


>gi|115488938|ref|NP_001066956.1| Os12g0541500 [Oryza sativa Japonica Group]
 gi|77556660|gb|ABA99456.1| Elongation factor TS family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113649463|dbj|BAF29975.1| Os12g0541500 [Oryza sativa Japonica Group]
 gi|125536917|gb|EAY83405.1| hypothetical protein OsI_38621 [Oryza sativa Indica Group]
 gi|125579622|gb|EAZ20768.1| hypothetical protein OsJ_36392 [Oryza sativa Japonica Group]
          Length = 1123

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V  +  FG FV      +GLVHIS++S   V   S +   G  V V+L++ + + G
Sbjct: 146 FTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDISSLFTVGQEVSVRLVEANKETG 205

Query: 682 KIKLSMKV 689
           +I L+M+ 
Sbjct: 206 RISLTMRT 213



 Score = 38.7 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVN---KIYKGQVVKVMDFGAFVHFCGARDGLV 647
           G    A++S       RE   + +         +   G V      G+FV      +G +
Sbjct: 231 GRNTTATTSRGSPRQTRERDEAKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFL 290

Query: 648 HISQLSTERVAKT-SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
              + +           ++ G  V VK+L+   RG++ L+MK   ++  + + 
Sbjct: 291 PREEEAVALFTLIGHSALEVGQQVRVKVLNV-VRGQVTLTMKE-GEDDEEDLA 341


>gi|108804846|ref|YP_644783.1| 30S ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941]
 gi|108766089|gb|ABG04971.1| SSU ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941]
          Length = 411

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++  + + +   V  +  G+V K++ FGAFV      +GL+HIS+L+   V    ++V+ 
Sbjct: 284 KDPWQEVVERVNVGDVIHGRVTKLVSFGAFVEVAEGVEGLIHISELAEHHVETPDEIVRS 343

Query: 667 GDTVWVKLLDFDD 679
           GD V  +++D D 
Sbjct: 344 GDEVDARVIDVDP 356



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I KG V  ++DFGAFV      DGL+HIS+LS   V   S+VV+ G+ V VK+L+ D +
Sbjct: 213 DIVKGTVSNLVDFGAFVDL-DGIDGLIHISELSWNHVDHPSEVVQVGEEVEVKVLEVDRE 271

Query: 680 RGKIKLSMKVVDQNTGKPIV 699
           R +I L +K   ++  + +V
Sbjct: 272 RERISLGLKQTRKDPWQEVV 291



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +      E      +  S+    +   I +G+VV++      V      +GL+  ++L+ 
Sbjct: 14  MRDFFREENGEIVPVDESVLIDFQDGDIVEGEVVRIDKDEVLVDIGYKSEGLIPANELTI 73

Query: 655 ERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMK 688
            + A   DVV+ G  +   +L   D  G++ LS K
Sbjct: 74  RKGADPKDVVELGQRIEALVLQKEDADGRLILSAK 108


>gi|224152200|ref|XP_002198831.1| PREDICTED: similar to putative exosome component 5, partial
           [Taeniopygia guttata]
          Length = 185

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 8/152 (5%)

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
             ++G P   E    +L ++    V+         + +V ++    GS     +  + +A
Sbjct: 31  RPKVGLPGVLERSREQLLQQTCEAVVLGVLHPRTAISLVLQVLSDAGSLLSCCLNAACMA 90

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS--GDEDHLGHMDFKVAGTDSGITAMQM 505
           L+DAG+P+S    G+   L  DG    IL D +   +++    + F +A  +  +  +  
Sbjct: 91  LLDAGLPLSALFCGVTCALQPDG---AILLDPTARQEQEARAVLTFAIASAERKVLMVTT 147

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
                  S   M   L  ++R    I      
Sbjct: 148 KGSC---SVQEMQQCLAASQRAADTIFQFYRD 176



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 22/194 (11%)

Query: 37  ETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISR 93
           +T VLA +         K+  D   L V  + +      +PG   R        E L+ +
Sbjct: 1   DTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVG----LPGVLERS------REQLLQQ 50

Query: 94  MIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQ 153
             +  +  +     +    +++ V+  D  S      + AA  AL+ +GLP      G  
Sbjct: 51  TCEAVVLGVLH--PRTAISLVLQVLS-DAGSLLS-CCLNAACMALLDAGLPLSALFCGVT 106

Query: 154 VDY-INGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHN 209
                +G  +L+P   ++Q     L   ++  +  VLMV  + +  S   +   +     
Sbjct: 107 CALQPDGAILLDPTARQEQEARAVLTFAIASAERKVLMVTTKGS-CSVQEMQQCLAASQR 165

Query: 210 ECKPVIEAISKLAK 223
               + +      +
Sbjct: 166 AADTIFQFYRDSVR 179


>gi|195428613|ref|XP_002062366.1| GK17502 [Drosophila willistoni]
 gi|194158451|gb|EDW73352.1| GK17502 [Drosophila willistoni]
          Length = 326

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 10/156 (6%)

Query: 318 DSETV----RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
             + V    R    + G+L    GS+    G+T+ + +V       E    S        
Sbjct: 37  KPDEVVAKPRTTFLRAGVLTTVRGSAYMEYGNTKVMAIV---APPHEVVRASARRMNMGS 93

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
              + N+   ATGE+  +    RRE     +  +A+ PV+ +     + L +   I E D
Sbjct: 94  LNCYVNYAAFATGELETVP---RREKQLSSMLTKALEPVVCRNEFLNFQLDVRVLIIEDD 150

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           G      +    +AL++ G+     +      + +D
Sbjct: 151 GCLLSTAINCCGVALVECGISTYDLITASTACIYRD 186



 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 22/148 (14%)

Query: 29  GAVLATYGETVVLAT------VVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRES 82
           G+    YG T V+A       VV   + +         VNY    +A G++       E+
Sbjct: 60  GSAYMEYGNTKVMAIVAPPHEVVRASARRMNMGSLNCYVNY--AAFATGEL-------ET 110

Query: 83  RPTENEILISRMIDRSIRPLFSKCYKNE---TQVIINVMQHDLESSPHVVSMVAASAALM 139
            P   E  +S M+ +++ P+     +NE    Q+ + V+  + +      ++     AL+
Sbjct: 111 VP-RREKQLSSMLTKALEPVV---CRNEFLNFQLDVRVLIIEDDGCLLSTAINCCGVALV 166

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRL 167
             G+     +  +          +NP  
Sbjct: 167 ECGISTYDLITASTACIYRDHVFINPNA 194


>gi|325115026|emb|CBZ50582.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
          Length = 214

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +  Q   L    GS+    G T+ +     G R + +     +   R    + + + 
Sbjct: 1   MRTMCLQTHSLAGATGSAFVSVGKTK-LNCAVYGPRPNTK----AASQDRGSINLEFKYA 55

Query: 382 PCATGEVSRMGAPSRREIGH-GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           P AT   +  GA + R+  H   L  +A++ V+        T+ +   + E DG    A 
Sbjct: 56  PFAT---TSKGACNERDSAHLVTLLHQAVNAVVRLDLYRKSTIAVSVLVLEDDGGVISAA 112

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLV----KDGDD-FIILSDISGDE 483
           +    LAL DAG+ +   + G +   V     DG     +L D   DE
Sbjct: 113 LTCIGLALADAGIEMLDVLTGASGCAVALEQPDGPPRICVLLDPDADE 160


>gi|312875975|ref|ZP_07735964.1| RNA binding S1 domain protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797173|gb|EFR13513.1| RNA binding S1 domain protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 207

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 568 GMGGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G   K +  I E+   K+ +ID +      S    + +   + I+++     +  +   +
Sbjct: 57  GAELKKLFEIGEKVKVKILDIDKNKKQIYLSIKKTQDDEWIKKIKNLY----LGMLVDCE 112

Query: 627 VVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           V KV+ FG  V       DG VHIS +      +  +V K GD +  K+++ D ++ +I 
Sbjct: 113 VTKVLPFGLIVWITEHDVDGFVHISNIPLGYNQRPHNVYKVGDRLKAKVIEIDEEKRRIA 172

Query: 685 LSMKVVDQNT 694
           LS+K + +  
Sbjct: 173 LSLKDLHEEE 182


>gi|331233354|ref|XP_003329338.1| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309308328|gb|EFP84919.1| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 324

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 18/238 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR     R I  +VG++ + +GS     G+++ I  V  G +         + +  +
Sbjct: 94  RADGRIHSDSRPICIKVGVISQANGSCYIESGNSKVICAV-YGPK---PRSSLSNSSSLS 149

Query: 373 DFMMHYNFLPCA-TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             ++   F P    G      A    E    +L ++A+ P L   +     + +   + E
Sbjct: 150 PLVISLRFAPFCMAGGRMAPTALGGVETTVSQLTQQALMPSLLPMSDSSI-VEVHINVLE 208

Query: 432 SDGSSSMA-TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM- 489
            D   S    V  SS+AL  AG+P    V    + L K+     +  D +  E       
Sbjct: 209 WDSPLSPGPCVLASSIALASAGIPTVGLVIPSTLALSKE-----LYLDPTATEAESASAI 263

Query: 490 -DFKVAGTDSGITAMQM----DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            D         +T +      D K   I  +     L   K     I    +  L + 
Sbjct: 264 FDLASIPAMGTVTHVGFRSTTDWKSAPIGNDTFDRCLDLCKSNAELIHGLAAAALKDH 321



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 36/234 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD------------GQDFFPL-T 60
           RP+ ++ G I+ Q++G+     G + V+  V   +                   F P   
Sbjct: 104 RPICIKVGVIS-QANGSCYIESGNSKVICAVYGPKPRSSLSNSSSLSPLVISLRFAPFCM 162

Query: 61  VNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRP-LFSKCYKNETQVIINVMQ 119
              +    A+G +              E  +S++  +++ P L      +  +V INV++
Sbjct: 163 AGGRMAPTALGGV--------------ETTVSQLTQQALMPSLLPMSDSSIVEVHINVLE 208

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS---LDL 176
            D   SP    ++A+S AL  +G+P  G V+ + +     +  L+P   E + +    DL
Sbjct: 209 WDSPLSP-GPCVLASSIALASAGIPTVGLVIPSTLALSK-ELYLDPTATEAESASAIFDL 266

Query: 177 FVSGTQDAV--LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
                   V  +      +  S  +  D      + CK   E I  LA    K+
Sbjct: 267 ASIPAMGTVTHVGFRSTTDWKSAPIGNDTFDRCLDLCKSNAELIHGLAAAALKD 320


>gi|260655209|ref|ZP_05860697.1| protein YhgF [Jonquetella anthropi E3_33 E1]
 gi|260630131|gb|EEX48325.1| protein YhgF [Jonquetella anthropi E3_33 E1]
          Length = 722

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 15/159 (9%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            ++ +M+     +  +L +   + E++ +      +V   G   +  I+ +         
Sbjct: 561 KLVGQMASDCGCTVSELMKDRSKREMIDVNKYVSGDV---GLPTLNDIMAELEK------ 611

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
                      A +  A +         +      G V  V  FGAFV      DGLVH+
Sbjct: 612 ----PGRDPRPAMVFFAFDPSVKTMKDLKTGMTLPGLVSNVTAFGAFVDVGVHTDGLVHV 667

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           SQ+    V   S ++  G  V V +LD D  R +I L++
Sbjct: 668 SQMG-RPVKDPSQLLHPGQAVSVTVLDVDLKRNRISLAL 705


>gi|260836913|ref|XP_002613450.1| hypothetical protein BRAFLDRAFT_123927 [Branchiostoma floridae]
 gi|229298835|gb|EEN69459.1| hypothetical protein BRAFLDRAFT_123927 [Branchiostoma floridae]
          Length = 804

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD 615
           M    + +   +  G   ++ I++     ++ D     +        +            
Sbjct: 677 MKNNVEGLAAELKCGTPTMQLIIDGLQQPLDYDIRAEFEKPLFKKGLVS---------MS 727

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +      G+V  + DFGAFV     +DGL+H S++  +R+ K    +  GD V VK+L
Sbjct: 728 DLKTGTTLTGRVTNLTDFGAFVDIGVGKDGLIHKSKIRPDRL-KGKKCLGPGDKVEVKVL 786

Query: 676 DFDD-RGKIKLSMKVV 690
           + D  RG+I L +  +
Sbjct: 787 NVDPSRGRIGLELLAL 802


>gi|68075199|ref|XP_679516.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56500280|emb|CAH98410.1| RNA helicase, putative [Plasmodium berghei]
          Length = 1162

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM--IRSITDVPEVNKIYKGQ 626
            G        E+    V +  +  +K +   +  I+ A+            +VN I+ G+
Sbjct: 143 KGKDNSLNKKERIDENVKLKKNRQLKYSLDDVKNIKKAKYEGDNEDDYRALKVNNIFSGK 202

Query: 627 VVKVMDFGAFVHF---CGARDGLVHISQLST--ERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + K+ DFG F+ F    G ++GLVHI+ +    +R+   ++  K    V VK+       
Sbjct: 203 IKKITDFGMFISFKTRDGYKEGLVHITDIDQNNKRI-NLNEKFKRNMIVKVKIKGIFGE- 260

Query: 682 KIKLSMKVVDQNTGKPIV 699
           KI L+M  VDQ TG+ +V
Sbjct: 261 KISLNMSEVDQKTGQNLV 278


>gi|239617308|ref|YP_002940630.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506139|gb|ACR79626.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 715

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV     +DGL+H +++    V    +V+  G  V VK+L  D +R 
Sbjct: 646 LEGTVRNVVDFGAFVDIGVKQDGLIHKTRMGKN-VCDPLEVLSVGQIVKVKVLSIDLERE 704

Query: 682 KIKLSM 687
           +I L +
Sbjct: 705 RIALEL 710


>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
           NA1]
 gi|226740342|sp|B6YSE7|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
 gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 272

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 103/270 (38%), Gaps = 34/270 (12%)

Query: 297 DIQAKVVRTVML---DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ A ++R  +L    +  R+DGR  E  RD+  ++ ++++  GS+    G+TQ +V + 
Sbjct: 5   EVMASIMRDHILALLKEGKRVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIK 64

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA----- 408
           +   E           ++     +   +P A+      G P  R I   R+  R      
Sbjct: 65  VDMGEP-----FPDLPEKGVITTNVELVPLASPSFEP-GPPDERAIELARVVDRGIRESG 118

Query: 409 ---IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----------- 454
              +  ++    +    + I   + + DG+   A+  G+  ALM A +P           
Sbjct: 119 AVELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEV 178

Query: 455 -ISK-----PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
            I       PV+ + + +        +L D + DE+ +      +   ++G+ +     +
Sbjct: 179 QILDEYEPLPVSKMPIPVTIAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKSE 238

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKV 538
            G      ++ A+  A      I  ++ + 
Sbjct: 239 GGSFKLEEVMYAIDLALTKAAEIREKVLEA 268



 Score = 39.1 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 55/250 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLAT--VVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R L+++   I + ++G+     G T VL    V       D  +   +T N +    A  
Sbjct: 34  RDLEIKINVIEK-AEGSAWVKLGNTQVLVGIKVDMGEPFPDLPEKGVITTNVELVPLASP 92

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
               G       P E  I ++R++DR IR           +          + ++V+ HD
Sbjct: 93  SFEPGP------PDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVFIDVHVLDHD 146

Query: 122 LESSPHVVSMVAASAALMLSGLPFEG-----------------PVVG----AQVDYINGQ 160
             +     S + A AALM + +P                    PV        +  + G 
Sbjct: 147 G-NLLD-ASGIGAIAALMSAKMPKVVYDEESGEVQILDEYEPLPVSKMPIPVTIAKVGGN 204

Query: 161 YVLNPRLDEDQGSLDLFVSGT------QDAVL--MVELEANQLSEDVVLDAIIFGHNECK 212
            +++P LDE+     L + G       ++ ++  + + E      + V+ AI     +  
Sbjct: 205 LLVDPNLDEE-----LVMDGRITITTDENGMISSVQKSEGGSFKLEEVMYAIDLALTKAA 259

Query: 213 PVIEAISKLA 222
            + E + +  
Sbjct: 260 EIREKVLEAV 269


>gi|189095324|ref|YP_001936337.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
 gi|157694667|gb|ABV65943.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
 gi|157777898|gb|ABV70084.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
          Length = 269

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
              ++ T+  +  ++  G +  +  +G FV+  G + GL+HIS++S++R+   S   ++G
Sbjct: 181 AHFKNQTNFLKPQQVIMGCITDIKSYGLFVNIYGLK-GLLHISEISSQRIDNLSKRFQKG 239

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             + V +L  + +RG+I L+ K
Sbjct: 240 QLIQVTVLYINLNRGRISLTAK 261


>gi|67523381|ref|XP_659751.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|40745035|gb|EAA64191.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|259487526|tpe|CBF86270.1| TPA: rRNA biogenesis protein RRP5, putative (AFU_orthologue;
            AFUA_2G16040) [Aspergillus nidulans FGSC A4]
          Length = 1780

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            +V + D    K+  S    +              +  +I  G+V KV  FGAF+   G  
Sbjct: 1280 RVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFIVIDGSS 1339

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H ++++  RV     + +EGD V  K+L  D D+GKI   +K 
Sbjct: 1340 NVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISFGLKA 1388



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++ ++  GA V F G   G + +S++S   +   S   K G  V V  L+ D  +GK+
Sbjct: 645 GTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKL 704

Query: 684 KLSMKV 689
            +S + 
Sbjct: 705 SVSCRD 710



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 17/241 (7%)

Query: 466  LVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
             +   DD  +L+DI         + F+V           +D + G I  +    +     
Sbjct: 1077 FIDASDDISLLADIEKQYPIGCALKFRVT---------GVDAEKGHIDLSARERSESLTF 1127

Query: 526  RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV 585
                  +   ++V   +  Q+        + A+    + +             E   + +
Sbjct: 1128 DDLSVGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKADPHAYHKNEVVRSCI 1187

Query: 586  NIDDDGTVKIASSSLAEIEAA-----REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
               D    KI  S       +     ++   +  +  +VN I +G V +V D G FV   
Sbjct: 1188 IGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVG 1247

Query: 641  GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKP 697
                  + IS LS   + +  D  + G  V  ++   D +  K+++S+K  V+D +   P
Sbjct: 1248 HNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAP 1307

Query: 698  I 698
            I
Sbjct: 1308 I 1308


>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
          Length = 260

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 32/264 (12%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            V EDI+   V  ++ +K  R DGR     RDI  +  L+++  GS+    GDT  +V V
Sbjct: 4   EVIEDIRKDYVYDLI-EKGKRADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGV 62

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA---- 408
            +   E            +   M +   +P A+ E    G P+   I   R+  R     
Sbjct: 63  KVEPGEP-----FSDTPNKGILMTNAELVPLASPEFES-GPPNENSIELARVVDRGIRGS 116

Query: 409 ----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---------- 454
               +  +  +  +  + L I     ++DG+   A   G+  +L++  +P          
Sbjct: 117 ETIDLEKLCIEEGEKVWMLFIDIHTLDNDGNLVDAAALGAITSLLNVAIPYEQYGLTGED 176

Query: 455 ---ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
              I      + +  +       +L D +  E+        V     G  +        G
Sbjct: 177 TLQIRDTPVAVTVVEI----GGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSGSNG 232

Query: 512 ISENIMVMALQQAKRGRLHILNEM 535
           ++E  +V   +        I  + 
Sbjct: 233 LTEEKIVKMAEIGIEKAREIREKY 256



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 35/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSL-KDGQDFFPLTVNYQERTYAVG 71
           R + +E   I +++DG+     G+TVVL  V V       D  +   L  N +    A  
Sbjct: 33  RDIIVERDLI-KKADGSTRVQIGDTVVLVGVKVEPGEPFSDTPNKGILMTNAELVPLASP 91

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVM----QHDLE 123
           +   G       P EN I ++R++DR IR        K    E + +  +       D +
Sbjct: 92  EFESGP------PNENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMLFIDIHTLDND 145

Query: 124 SSPHVVSMVAASAALMLSGLPF--------------EGPVVGAQVDYINGQYVLNPR-LD 168
            +    + + A  +L+   +P+              + PV    V  I G  +++P   +
Sbjct: 146 GNLVDAAALGAITSLLNVAIPYEQYGLTGEDTLQIRDTPV-AVTVVEIGGNLLVDPNVYE 204

Query: 169 EDQGSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
           E   +  L V    D  +  + +  +N L+E+ ++     G  + + +
Sbjct: 205 ESAATSKLTVISNADGSISGLQKSGSNGLTEEKIVKMAEIGIEKAREI 252


>gi|15789766|ref|NP_279590.1| translation initiation factor IF-2 subunit alpha [Halobacterium sp.
           NRC-1]
 gi|169235483|ref|YP_001688683.1| translation initiation factor IF-2 subunit alpha [Halobacterium
           salinarum R1]
 gi|20532140|sp|Q9HRT8|IF2A_HALSA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|229847551|sp|B0R3M0|IF2A_HALS3 RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|10580148|gb|AAG19070.1| translation initiation factor eIF-2 subunit alpha [Halobacterium
           sp. NRC-1]
 gi|167726549|emb|CAP13334.1| translation initiation factor aIF-2 alpha subunit [Halobacterium
           salinarum R1]
          Length = 267

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++  G+V  + DFG FV     +D  GLVH+S++++  +    D V E  TV  K+
Sbjct: 7   PDEGELVVGKVDDIEDFGVFVDLEQYQDKRGLVHVSEVASGWIKNVRDHVNEDQTVVAKV 66

Query: 675 LDFDDR-GKIKLSMKVVD 691
           L  D+   +I LS+K V+
Sbjct: 67  LGVDESAQQIDLSLKDVN 84


>gi|325116055|emb|CBZ51609.1| putative 30S ribosomal protein S1 [Neospora caninum Liverpool]
          Length = 1526

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 609  MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             IR      + +++ +G+VV +  FG  V F   R GL+H+S++S  RV +  DV+  G 
Sbjct: 1256 HIREQMRRVKPDQVVEGEVVSIHPFGVMVQFGECR-GLLHVSEVSAARVERLEDVLPLGS 1314

Query: 669  TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
             V   +L +D   GKI L+ K++++  G+
Sbjct: 1315 RVRALVLHYDKPTGKIALTTKLLERYPGE 1343


>gi|95929284|ref|ZP_01312028.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
 gi|95134782|gb|EAT16437.1| RNA binding S1 [Desulfuromonas acetoxidans DSM 684]
          Length = 399

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +  +++ D   V   + G+V ++  FGAFV      DGL+HIS+L    R+    +V+KE
Sbjct: 277 DPWQNVADNFPVGSEHTGKVSRLAQFGAFVTLEEGIDGLIHISKLGEGRRINHPREVLKE 336

Query: 667 GDTVWVKLLDFD-DRGKIKL 685
           G  + V +   D ++ +I L
Sbjct: 337 GQELAVTIEKIDEEQKRISL 356



 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 82/246 (33%), Gaps = 22/246 (8%)

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGT--------DSGITAMQMDMKIGGISENI 516
             +  G     + D+   ++  G +  +V  T          G       +  G      
Sbjct: 49  VFLDVGQKGEGVLDVRELQNDEGELSVEVGDTIEAFFMSRKGGELRFTTKIGGGRSGHEQ 108

Query: 517 MVMALQQAKRGRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIR 575
           +  A +        I  E+           +  F P  +I     D    +IG       
Sbjct: 109 LEEAWRSGIPVDGRIEKEIKGGYEIMLPGNVRSFCPYSQIGLRRQDNPEELIGQS----- 163

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFG 634
                   K++   +    I  S    +E  R+    S+ +  +       +V  + +FG
Sbjct: 164 -----FQVKISQFSEQGRNIVVSRRVLLEEQRQSQAESLRETLKEGMRVTAEVTSIREFG 218

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           AFV   G  +GL+ IS+++  RV   ++V+  G ++ + +   D    K   S++    +
Sbjct: 219 AFVDI-GGIEGLLPISEVAYSRVEDLNEVLHVGQSLELVVKSLDWKNNKFSFSLRDTLAD 277

Query: 694 TGKPIV 699
             + + 
Sbjct: 278 PWQNVA 283


>gi|125773865|ref|XP_001358191.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
 gi|54637926|gb|EAL27328.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
          Length = 234

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           + +    + +R++  +   L R  GS ++ +G T  I  V LG  E +    S+ G+   
Sbjct: 6   KPEHVAKDKLREMQCKFNPLSRCDGSVMYCQGATVVISAV-LGPVEVKTQNLSIDGSY-- 62

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +  N+ P A       G P  +E       R  +   L   A     + +  +  E 
Sbjct: 63  ---LECNYRPKA-------GLPQVKERIREAAVRDVLELALLSEAYPRSKMSLQIQELED 112

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  + LA++  G+P+    A +   + ++GD    + D    E       F 
Sbjct: 113 RGSIDACALNSACLAMLIGGLPLKCSFAAVHCIINEEGD---YILDPDQRETENERASFT 169

Query: 493 VAG 495
            A 
Sbjct: 170 FAF 172



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 18/150 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+V+   G TVV++ V+    +K      D   L  NY+ +      +P    R     
Sbjct: 29  DGSVMYCQGATVVISAVLGPVEVKTQNLSIDGSYLECNYRPKAG----LPQVKERIREAA 84

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
             + + ++ + +   R   S       Q+     + +   S    ++ +A  A+++ GLP
Sbjct: 85  VRDVLELALLSEAYPRSKMS------LQI----QELEDRGSIDACALNSACLAMLIGGLP 134

Query: 145 FEGPVVGAQ-VDYINGQYVLNPRLDEDQGS 173
            +        +    G Y+L+P   E +  
Sbjct: 135 LKCSFAAVHCIINEEGDYILDPDQRETENE 164


>gi|331701144|ref|YP_004398103.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128487|gb|AEB73040.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929]
          Length = 126

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++     G V  +  +G F+       GL+HIS+  T  V     + + G TV   ++D 
Sbjct: 4   KIGMKVHGTVTGIQPYGVFLDIGEHMQGLIHISECQTGFVDDLYKIFRVGQTVSALIIDI 63

Query: 678 DD-RGKIKLSMKVVD 691
           D+  GKI LS +  D
Sbjct: 64  DEYSGKISLSTRSTD 78


>gi|294931469|ref|XP_002779890.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
 gi|239889608|gb|EER11685.1| ATP-dependent RNA helicase DHX8, putative [Perkinsus marinus ATCC
           50983]
          Length = 1239

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 9/101 (8%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQL-----STERV 657
           A     S     E+  I++G V +VM++G FV F    G ++GLVH+ ++     +    
Sbjct: 252 APTKRSSDLQPLELYTIHRGTVQRVMEYGCFVAFRTQEGEKEGLVHVGEILPASSAGRSR 311

Query: 658 AKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
              SD+VK   +V+VK++      KI LSM+  DQ TG+ +
Sbjct: 312 MSASDLVKRNQSVYVKIVGLAGS-KISLSMREADQKTGEDL 351


>gi|67623169|ref|XP_667867.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54659037|gb|EAL37636.1| hypothetical protein Chro.40220 [Cryptosporidium hominis]
          Length = 239

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 26/223 (11%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +     ISA VG+    +GS+ F  G ++ I  V           +  S  + 
Sbjct: 3   IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATV--------WRPEEASSNKC 54

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             ++              R+G P            R    V+   +     + I  +I  
Sbjct: 55  KSYL--------EVILRPRIGQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVS 106

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDISGDEDHLG 487
            DG      +  + LAL+D+G+P+      I++        + D   ++ D +  E    
Sbjct: 107 EDGPILPVCINAAVLALIDSGIPMEFFPLAISIAESSHFYGERDISHLMLDPTQSEFEQC 166

Query: 488 HMDFKVAGTD------SGITAMQMDMKIGGISENIMVMALQQA 524
                +          S IT     +    + + I  ++L  A
Sbjct: 167 ISCSTIVINTTEKNIFSCITNKGTGVSHNKLLDEIHPISLSVA 209



 Score = 43.0 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 25/146 (17%)

Query: 9   IEWAGRPLKLETGRIARQS------DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           I + GR   LE G I+         +G+   + G + V+ATV         +    L V 
Sbjct: 3   IRYDGRT-NLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASSNKCKSYLEVI 61

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQH 120
            + R                +P E+  LI   I R    +  F+   +    + + ++  
Sbjct: 62  LRPRI--------------GQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVSE 107

Query: 121 DLESSPHVVSMVAASAALMLSGLPFE 146
           D    P  V + AA  AL+ SG+P E
Sbjct: 108 DGPILP--VCINAAVLALIDSGIPME 131


>gi|312793510|ref|YP_004026433.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180650|gb|ADQ40820.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 663

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 568 GMGGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G   K +  I E+   K+ +ID +      S    + +   + I+++     +  +   +
Sbjct: 513 GAEFKKLFEIGEKVRVKILDIDKNKKQIYLSIKKTQDDEWIKKIKNLY----LGMLVDCE 568

Query: 627 VVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           V KV+ FG  V       DG VHIS +      +  +V K GD +  K+++ D ++ +I 
Sbjct: 569 VTKVLPFGLIVWITEHDVDGFVHISNIPLGYNQRPHNVYKVGDRLKAKVIEIDEEKRRIA 628

Query: 685 LSMKVVDQNT 694
           LS+K + +  
Sbjct: 629 LSLKDLHEEE 638



 Score = 39.1 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKLLDFDD 679
           ++ KG+++KV +    V      +G+++  ++         D+ K G+T+  V + + D+
Sbjct: 306 EVVKGRIIKVEEDYLLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGETIEAVVIKESDE 365

Query: 680 RGKIKLS 686
            G + LS
Sbjct: 366 EGNVVLS 372


>gi|326433657|gb|EGD79227.1| hypothetical protein PTSG_12966 [Salpingoeca sp. ATCC 50818]
          Length = 2005

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  + + DDG +++  +        RE      +  ++ +I  G + +V  FG FV    
Sbjct: 1433 GKVLFVTDDGKIEL--TLKRSAVNPRESKPVRYNDLKIGQIVAGVIKRVESFGVFVTIDN 1490

Query: 642  AR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK--VVD--QNTG 695
            ++  GL HIS+ +  ++     V   GD V  K+L  + ++ +I L++K   V+  Q+TG
Sbjct: 1491 SKLSGLAHISECADAKIDNLDAVYNVGDAVKAKILRLNKEKKRISLTLKPSAVEGKQSTG 1550

Query: 696  KP 697
            + 
Sbjct: 1551 ED 1552



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 92/255 (36%), Gaps = 41/255 (16%)

Query: 448  LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
            + + G PI+  V  +  G V               E        +    +  IT  ++  
Sbjct: 1244 MYEPGSPITTWVVAVKNGKV---------------ELSTIDPATQEEQENKEITTGRV-H 1287

Query: 508  KIGGISENIMVMALQQAKRGRLHILNEMSKVLSES--RLQLGEFTPRVEIMAIPPDQIRN 565
              G I    +++ L + K+GR+HI +   K  ++   R  L E             +++ 
Sbjct: 1288 TKGSIH---LIVRLGRGKKGRVHICDVDDKFHADPFQRFALHELV-----------KVKK 1333

Query: 566  VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
            V             +   +++          S       A R+ I +     + ++I +G
Sbjct: 1334 VEAPKHSHRNEQQHKADCQLS-------MRPSEIDTSTAAPRDPIIASAADVKQDQIVRG 1386

Query: 626  QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             V  V D G FV         V I+ LS   +   + V K G  V  K+L   D GKI+L
Sbjct: 1387 YVCNVTDNGVFVALSRHVSARVKIANLSDLFIKDFTKVFKPGQLVKGKVLFVTDDGKIEL 1446

Query: 686  SMK--VVDQNTGKPI 698
            ++K   V+    KP+
Sbjct: 1447 TLKRSAVNPRESKPV 1461



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            G  ++A +    +  +   + +         +  G +  +  FG  V F     GLV +
Sbjct: 558 KGKRRLAFTCKKTLVESDLPVIASAASARRGMLAHGFIDSIRPFGCIVRFYNNVKGLVPL 617

Query: 650 SQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLS 686
            +LS TE++   S   KEG  V  +++  D  + +I LS
Sbjct: 618 KELSATEKIKDASAYFKEGQVVKCRVVQTDQAKRRIGLS 656



 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +  A+E + +  D  +  + + G +       +FV+  G+  G+  I + S+  V     
Sbjct: 755 MVQAKEAVVASKDELKEGEQHFGYISSSTRTMSFVNLIGSVSGMCPIREASSGYVRSMES 814

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
                 TV  ++    D GK+  S K   
Sbjct: 815 YFSPNQTVCARVHAIKD-GKVDFSFKSAQ 842


>gi|156082920|ref|XP_001608944.1| RNA helicase [Babesia bovis T2Bo]
 gi|154796194|gb|EDO05376.1| RNA helicase, putative [Babesia bovis]
          Length = 1156

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 6/83 (7%)

Query: 622 IYKGQVVKVMDFGAFVHF---CGARDGLVHISQL--STERVAKTSDVVKEGDTVWVKLLD 676
           I+KG+V KV++FG FV F    G   GLVH+S++     R+++ S+ +KE   V+VK + 
Sbjct: 215 IFKGRVTKVVEFGGFVRFKSKNGIHSGLVHVSEILPGNRRLSEASEALKEDMVVYVKKIG 274

Query: 677 FDDRGKIKLSMKVVDQNTGKPIV 699
             +  KI LSMK VDQ TG+ + 
Sbjct: 275 MKND-KISLSMKSVDQKTGRDLC 296


>gi|255085236|ref|XP_002505049.1| predicted protein [Micromonas sp. RCC299]
 gi|226520318|gb|ACO66307.1| predicted protein [Micromonas sp. RCC299]
          Length = 387

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  + KG V  V  +GAFV   G   GL+HISQ+S +R+    +V+  GD + V +L  D
Sbjct: 252 VGDVCKGVVQAVKPYGAFVDV-GGVSGLLHISQISHDRIVAVENVLAPGDELKVLILSKD 310

Query: 679 -DRGKIKLSMKVVDQNTG 695
            +R ++ LS K ++ + G
Sbjct: 311 AERSRLSLSTKKLEPSPG 328


>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
 gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
          Length = 235

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           K        + +R++  +   L R+ GS ++ +G T  ++   LG  E +    S+ G+ 
Sbjct: 3   KKAATNAAKDKLREMQCKFNPLSRSDGSVMYSQGAT-VVIAAVLGPIEVKTQNLSIEGSY 61

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
                +  N+ P A       G P  +E       R  +   L   A     + +  +  
Sbjct: 62  -----LECNYRPKA-------GLPQVKERIREAAIRDVLELALLSEAYPRSKMSLQVQEL 109

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS 480
           E  GS+    +  + LAL+  G+P+    A +   ++ +  +F++  +++
Sbjct: 110 EDRGSTDACALNSACLALLIGGLPLKYSFAAVHC-IINEQGEFVLDPELN 158



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 77/190 (40%), Gaps = 30/190 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAV 70
           R ++ +   ++R SDG+V+ + G TVV+A V+    +K          L  NY+ +    
Sbjct: 15  REMQCKFNPLSR-SDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKA--- 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQ----VIINVMQHDLESSP 126
                        P   E    R+ + +IR +      +E      + + V + +   S 
Sbjct: 71  -----------GLPQVKE----RIREAAIRDVLELALLSEAYPRSKMSLQVQELEDRGST 115

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQ-VDYINGQYVLNPRLDE---DQGSLDLFVSGTQ 182
              ++ +A  AL++ GLP +        +    G++VL+P L+E    Q S         
Sbjct: 116 DACALNSACLALLIGGLPLKYSFAAVHCIINEQGEFVLDPELNETLRQQASFTFAFDSVD 175

Query: 183 DAVLMVELEA 192
             +L+V+ + 
Sbjct: 176 GNLLLVQTKG 185


>gi|154359360|gb|ABS79702.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 176

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 105 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 163

Query: 679 -DRGKIKLSMKVV 690
            DRG++ LS K +
Sbjct: 164 RDRGRVSLSTKKL 176


>gi|237752568|ref|ZP_04583048.1| 30s ribosomal protein s1 [Helicobacter winghamensis ATCC BAA-430]
 gi|229376057|gb|EEO26148.1| 30s ribosomal protein s1 [Helicobacter winghamensis ATCC BAA-430]
          Length = 560

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +  ++ KG V  + DFGAFV      DGL+H       +  K  D++K G
Sbjct: 365 KPFEQFAKKHKEGEVLKGVVATLTDFGAFVKL-DGIDGLLHNEDAYWNKNEKCKDLMKIG 423

Query: 668 DTVWVKLLDFDDRG-KIKLSMKVV 690
           ++V VK+   D +  ++ L+ K +
Sbjct: 424 ESVEVKIAKIDRQKERVSLTRKGL 447



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ ++ + N   +G+V K+  FG FV      +GLVH +++S +     S + KE D
Sbjct: 194 RKDAVENLLKENGTLEGKVKKITSFGMFVDV-NGVEGLVHYTEISYKGPVNPSKLYKEDD 252

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
            V +K+L++D D+ ++ LS+K   ++  + +
Sbjct: 253 IVPIKVLNYDKDKRRLALSIKATAEDPWREV 283



 Score = 37.2 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                  ++    G V  V DFG F+      D L+    L   +     + +K GD + 
Sbjct: 454 EFAKKYSIDDAVIGTVRDVKDFGVFIKIDDEMDALIRNEDLPPLK----KEEIKIGDKIN 509

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGK 696
             +   D    +I++S++ +++   K
Sbjct: 510 GVISLIDAQNNRIRVSVRRLERQKEK 535


>gi|146412582|ref|XP_001482262.1| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN  ++G V    +           +    +  +  ++Y+G V +V DFG FV   G
Sbjct: 1180 GKVVNCKEEGRV--LITLKESEVNGELNVLKKFEDLKEGEVYEGSVRQVTDFGVFVKLDG 1237

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
                 GL H S+++  +      +  EGD V VK+L  + ++ ++ L MKV
Sbjct: 1238 TLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEKKQLSLGMKV 1288



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 618 EVNKIYKGQVVKVMDF---GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           E+ +I       V  F   GA V F G     +  +++S   V    D +K+G TV V++
Sbjct: 567 ELAEIGLKTPATVEKFVHNGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRI 626

Query: 675 LDFDD-RGKIKLSMKVVD 691
           +D D+ + ++ +++K  D
Sbjct: 627 MDRDETQQRLIVTLKQND 644



 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 39/86 (45%)

Query: 604  EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              A + + +  +  +   + KG V  V + G +V    +  GLV +S LS   +      
Sbjct: 1112 NKAVDKVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSYLKDWKKY 1171

Query: 664  VKEGDTVWVKLLDFDDRGKIKLSMKV 689
             K+   V  K+++  + G++ +++K 
Sbjct: 1172 FKQHQPVVGKVVNCKEEGRVLITLKE 1197


>gi|190348684|gb|EDK41184.2| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  VN  ++G V    +           +    +  +  ++Y+G V +V DFG FV   G
Sbjct: 1180 GKVVNCKEEGRV--LITLKESEVNGELNVLKKFEDLKEGEVYEGSVRQVTDFGVFVKLDG 1237

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
                 GL H S+++  +      +  EGD V VK+L  + ++ ++ L MKV
Sbjct: 1238 TLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEKKQLSLGMKV 1288



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 618 EVNKIYKGQVVKVMDF---GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           E  +I       V  F   GA V F G     +  +++S   V    D +K+G TV V++
Sbjct: 567 ESAEIGLKTPATVEKFVHNGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRI 626

Query: 675 LDFDD-RGKIKLSMKVVD 691
           +D D+ + ++ +++K  D
Sbjct: 627 MDRDETQQRLIVTLKQND 644



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 579  EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            + T A V   D  + KI+ S       A + + +  +  +   + KG V  V + G +V 
Sbjct: 1089 DYTTATVLAVDKDSKKISVSLR--TNKAVDKVINSVEDLQRGDVVKGFVKNVANNGVYVS 1146

Query: 639  FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
               +  GLV +S LS   +       K+   V  K+++  + G++ +++K 
Sbjct: 1147 LGRSVHGLVRVSDLSDSYLKDWKKYFKQHQPVVGKVVNCKEEGRVLITLKE 1197


>gi|297619844|ref|YP_003707949.1| translation initiation factor 2 subunit alpha [Methanococcus voltae
           A3]
 gi|297378821|gb|ADI36976.1| translation initiation factor 2, alpha subunit [Methanococcus
           voltae A3]
          Length = 263

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V  V  FGAFV       ++G+VHIS++S+  +    D +K+G  V  K+
Sbjct: 6   PEEGDIVIGNVSDVKSFGAFVELLEYPKKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKV 65

Query: 675 LDFD-DRGKIKLSMKVV 690
           +  + ++ +I LS+K V
Sbjct: 66  VRVNPNKNQIDLSLKRV 82


>gi|77406010|ref|ZP_00783088.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B]
 gi|77175405|gb|EAO78196.1| S1 RNA binding domain protein [Streptococcus agalactiae H36B]
          Length = 314

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           IG+G + ++ I+E       ++ DD    +    +                 +V +  +G
Sbjct: 186 IGVGQETLKDIIEDLLKPGRDLRDDFEAPVLRHDV-----------LDVSDLKVGQELQG 234

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL----------STERVAKTSDVVKEGDTVWVKLL 675
            V  V+DFGAFV      DGL+H S+L              +   S  +  GD V V ++
Sbjct: 235 TVRNVVDFGAFVDIGVHEDGLIHQSRLIKRKRDKKTRKMPPLQHPSKYLSVGDIVTVWVV 294

Query: 676 DFD-DRGKIKLSM 687
           + D +R +I LS+
Sbjct: 295 EVDAERSRIGLSL 307


>gi|320036441|gb|EFW18380.1| rRNA biogenesis protein RRP5 [Coccidioides posadasii str. Silveira]
          Length = 1830

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    K+  +                   +  +I  G+V KV +FGAFV   G  
Sbjct: 1297 RITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTGKVRKVEEFGAFVSIDGTA 1356

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++  +V     + ++GD V  K+L  D  + +I L +K 
Sbjct: 1357 NLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQISLGLKA 1405



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G  V + + GA + F GA  G + +S++S   +   S     G  V V  L  D ++G++
Sbjct: 667 GTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRL 726

Query: 684 KLSMKV 689
            +S K 
Sbjct: 727 VVSCKD 732



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 608  EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +   +  D  +VN I +G V ++ D G FV         V +S LS   + +  D  +  
Sbjct: 1232 DPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQDEFQID 1291

Query: 668  DTVWVKLLDFDDR-GKIKLSMK--VVDQNTGKPI 698
              V  ++   D    K+++++K   +D +   P+
Sbjct: 1292 QIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPL 1325



 Score = 40.7 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  + D G FV F G   G +    +  E + K         ++   +   D D  
Sbjct: 849 VTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSIDQDAQ 908

Query: 682 KIKLSMKVV 690
           +  L+MK V
Sbjct: 909 RFILTMKPV 917


>gi|156058222|ref|XP_001595034.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980]
 gi|154700910|gb|EDO00649.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1789

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            KV + D+    I  S    +     +     +   V ++  G++ KV DFG F+   G  
Sbjct: 1278 KVTVVDEVLNHIQLSLKPSVIDKDYIAPLTFNDIHVGQVITGKIRKVEDFGVFIVVDGSA 1337

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV     +  +GD V   +L  D ++ +I  SMK 
Sbjct: 1338 NVSGLCHQSEMAEKRVHDVKKLYSDGDEVKAIVLKMDPEKKRISFSMKA 1386



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +V +M+ GA V F G   G + +S++S   +   S   K G  V V +L  D +  K+
Sbjct: 651 GTIVNIMNTGAVVQFYGNIRGFLPVSEMSEAYIQDPSQHFKVGQVVNVHVLKVDPESQKL 710

Query: 684 KLSMKV 689
            +S K 
Sbjct: 711 TVSCKD 716



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 569  MGGKVIRGIVEQTGAKVNIDDDGTV--KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
                    IV      ++I +        AS  +    A ++   S     +VN I +G 
Sbjct: 1172 PSKYSKNDIVRVCVTDLDIPNKRVRLSTRASRVMNSSAAVQDAEISSISQLKVNDIVRGF 1231

Query: 627  VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
            V  V D G FV+  G     V IS LS   +       +    V  K+   D+    I+L
Sbjct: 1232 VKHVADKGLFVNLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHIQL 1291

Query: 686  SMK 688
            S+K
Sbjct: 1292 SLK 1294



 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQV----VKVMDFG-AFVHFCGARDGLVHISQLSTERVAKTSD 662
           E      +  +V ++ KG+V    V    FG   V+      GLV  + L+  ++     
Sbjct: 540 EQAYLRIEDLKVGEVVKGKVEKLIVNANGFGGLLVNLAENISGLVPETHLADVQLLHPEK 599

Query: 663 VVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
             KEG +V  ++L  D   + I+L++K    N+  P
Sbjct: 600 KFKEGMSVTARVLSTDPGKRQIRLTLKKTLVNSESP 635



 Score = 41.4 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           ++  +   + + ++  A ++AA+      + D  + ++   G V  +     FV F G  
Sbjct: 794 LDKHEQRRLIVLTNKPALVKAAQSKTLLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGL 853

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
            GL+  + +  + +       K+  TV VK++  D+   +  LS+
Sbjct: 854 TGLLPKNMIPEKNLRLPDFGFKKWQTVEVKVIKIDNGLRRFLLSL 898



 Score = 38.7 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
             I  G+V +V +    V    +    ++++ L  +          + D V V + D D  
Sbjct: 1132 MIVPGKVTRVNERQVMVQITDSISAPINLTDLCDDFSEADPSKYSKNDIVRVCVTDLDIP 1191

Query: 680  RGKIKLSMKV 689
              +++LS + 
Sbjct: 1192 NKRVRLSTRA 1201


>gi|242046826|ref|XP_002461159.1| hypothetical protein SORBIDRAFT_02g041940 [Sorghum bicolor]
 gi|241924536|gb|EER97680.1| hypothetical protein SORBIDRAFT_02g041940 [Sorghum bicolor]
          Length = 937

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           + G+V+ +  FG FV      +GLVHIS++S   V   S +   G  V V+LL+ + +  
Sbjct: 147 FTGKVMSIKPFGVFVDIGAYTEGLVHISRVSDGFVKDISSLFTVGQEVSVRLLEANKETK 206

Query: 682 KIKLSMKVVD 691
           +I L+M+  D
Sbjct: 207 RISLTMREGD 216


>gi|301629530|ref|XP_002943891.1| PREDICTED: 30S ribosomal protein S1-like [Xenopus (Silurana)
           tropicalis]
          Length = 390

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I    I+++     K +   V +   K N      V ++  ++ E     E  + +  + 
Sbjct: 136 IDTRPIKDLTPYENKTLEFKVIKLDRKRN-----NVVLSRRAVVEASMGEERAKLMETLK 190

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLD 676
           E   I KG +  + DFG FV      DGLVH+S LS     + +    K+G  V   +L 
Sbjct: 191 EGA-IVKGPIKSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVEAIVLA 249

Query: 677 FD-DRGKIKLSMKVVDQNT 694
            D +R +I L +K +D + 
Sbjct: 250 VDVERERISLGIKQLDGDP 268



 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +   V +  +   G+V  V   GA +       G +  S++S +RV    +V+KEG
Sbjct: 267 DPFTTFVTVNDKGQTVSGKVKSVDARGAEIDLGEDIVGYLRASEISRDRVEDARNVLKEG 326

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           D V   +++ D + + I+LS+K  DQ
Sbjct: 327 DEVTAVVVNVDRKTRNIQLSIKAKDQ 352


>gi|296231558|ref|XP_002761078.1| PREDICTED: exosome complex exonuclease MTR3-like [Callithrix
           jacchus]
          Length = 271

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ------ 370
           RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E                
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGGGPAGAGGEAP 89

Query: 371 ---RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
              R   +  +   P A G   R       E       + A+ P +         L + +
Sbjct: 90  AALRGRLLCDFRRAPFA-GRRRRAPQGGGEERELALALQEALEPAVRLGRYPRAQLEVSA 148

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            + E  GS+  A +  ++LAL DAGV +   V G  + L   G     L D +  E+   
Sbjct: 149 LLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAP-GPASTWLLDPTRLEEERA 207

Query: 488 HMDFKVAGTD 497
                VA   
Sbjct: 208 AAGLTVALMP 217


>gi|295667623|ref|XP_002794361.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb01]
 gi|226286467|gb|EEH42033.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb01]
          Length = 1815

 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++   D    K+  S    +                 +I  G+V  V +FGAF+   G  
Sbjct: 1289 RIIFVDAEANKLQMSLKESVLEPNYKAPITIRDLNRGQIVTGRVRSVEEFGAFIVIDGTA 1348

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H ++++ ++V     + ++GD V  K++  D D+ +I L +K 
Sbjct: 1349 NLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKIVKIDHDKERISLGLKA 1397



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           G ++ +   GA V F G   G + +S++S   +   S     G  V V
Sbjct: 659 GTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNV 706



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +VN I +G V +V + G FV         V IS LS   + +     +    V  +++  
Sbjct: 1234 KVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSYLKEWQPEFQVDQLVRGRIIFV 1293

Query: 678  D-DRGKIKLSMK--VVDQNTGKPI 698
            D +  K+++S+K  V++ N   PI
Sbjct: 1294 DAEANKLQMSLKESVLEPNYKAPI 1317



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 3/125 (2%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKG 625
           G     IR   +     +         I  S+   ++ AR+         ++ +     G
Sbjct: 784 GSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGLKVTG 843

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIK 684
            V  ++  G FV F     G +    +  + VAK +       T+   +    DDR +  
Sbjct: 844 FVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPNFGYTLSQTISSFVHSIEDDRQRFI 903

Query: 685 LSMKV 689
           LS+K 
Sbjct: 904 LSLKE 908



 Score = 40.7 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           G  V       GLV    LS  ++       +EG  V  ++L  + ++ +++L++K    
Sbjct: 579 GLIVSLADGISGLVPRMHLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLL 638

Query: 693 NTGKP 697
           N+  P
Sbjct: 639 NSESP 643


>gi|237738612|ref|ZP_04569093.1| LytB protein [Fusobacterium sp. 2_1_31]
 gi|229424095|gb|EEO39142.1| LytB protein [Fusobacterium sp. 2_1_31]
          Length = 827

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P+    V G   +VI          + +D         +   +     E  +    + EV
Sbjct: 425 PENEEKVAGKKVQVI-------VKDIKVDPKDKRNKKITYSVKDIKLAEQAKEFAGL-EV 476

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +     V +V++FG  V     + G +HIS++S +R+ K +D  K GD +   ++  D+
Sbjct: 477 GQTVDCVVTEVLEFGLAVDINALK-GFIHISEVSWKRLDKLADAYKVGDKIKAVVVSLDE 535

Query: 680 RGK-IKLSMKVVDQNTG 695
             K +KLS+K ++ +  
Sbjct: 536 AKKNVKLSIKRLEADPW 552



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKE 666
           +   ++ D  +V     G V KV+ +GAFV      +GLVHIS  S  +     ++ VKE
Sbjct: 550 DPWATVADEFKVGDEVDGVVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVAEYVKE 609

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+ V VK+ D   +  K+KL +K +  N  
Sbjct: 610 GEKVKVKITDLHPEDRKLKLGIKQLVANPW 639



 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDRKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           FV      DG +     S E +    D   EGD V  ++++ + D  KIKLS+K
Sbjct: 749 FVELTKGIDGFIPTQYASKEFIKNIRDKFNEGDVVKARVVEVNKDTQKIKLSIK 802



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S      V+ + KG+VV+V  FG FV      D  VH S  +           + G+
Sbjct: 638 PWDSAEKDYAVDTVIKGKVVEVKPFGIFVELTDGIDAFVHSSDYNWIGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDRKIKGSLKALRKSPWE 724


>gi|312863480|ref|ZP_07723718.1| S1 RNA binding domain protein [Streptococcus vestibularis F0396]
 gi|311101016|gb|EFQ59221.1| S1 RNA binding domain protein [Streptococcus vestibularis F0396]
          Length = 92

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    +G +  +  +GAFV       GL+HIS++ T  +    + +K    V V+++D
Sbjct: 1   MKIGDKLRGVITGIKPYGAFVSLENGTTGLIHISEIKTGYIDNIYNTLKVDQEVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+   K  LS++ +++ 
Sbjct: 61  FDEFTQKASLSLRTLEEE 78


>gi|258573391|ref|XP_002540877.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901143|gb|EEP75544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1819

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    K+  +                   +  +I  G+V KV +FGAFV   G  
Sbjct: 1283 RITLVDTEAGKVQMTLKQSALDPNYKPPLQLSDLKQGQIVTGKVRKVEEFGAFVTIDGTA 1342

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ ++VA    + ++GD V  K+L  D ++ +I L +K 
Sbjct: 1343 NLSGLCHRSEMAEQKVADARKLYEQGDLVKAKILKVDTEKAQISLGLKA 1391



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +V + + GA V F GA  G + +S++S   +   S     G  V V +L  D ++G++
Sbjct: 666 GTLVSIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRL 725

Query: 684 KLSMKV 689
            +S K 
Sbjct: 726 VVSCKD 731



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 608  EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +   +  D  +V  I +G V KV D G FV         V +S LS   + +  D  +  
Sbjct: 1218 DPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVTAYVRVSDLSDAYLKEWQDEFQVD 1277

Query: 668  DTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
              V  ++   D + GK+++++K   +D N   P+
Sbjct: 1278 QIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPL 1311



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           G  V       GL+    ++  ++       +EG  V  ++L  + ++ +++L++K
Sbjct: 586 GLIVSLADGISGLIPGMHMADTKLQHPEKKFREGLEVTARILSVNLEKRQLRLTLK 641


>gi|299144438|ref|ZP_07037518.1| general stress protein 13 [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518923|gb|EFI42662.1| general stress protein 13 [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 133

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 47/79 (59%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G V  V+ FGAF++      GLVHIS++S   V   SD +K+G  V VK+L  D
Sbjct: 5   VGQIVDGVVSGVLKFGAFINLPEDNSGLVHISEISDSYVENVSDFLKKGQKVKVKVLSLD 64

Query: 679 DRGKIKLSMKVVDQNTGKP 697
           DRGKI LS+K     + KP
Sbjct: 65  DRGKIALSIKQAQVKSSKP 83


>gi|227824812|ref|ZP_03989644.1| S1 RNA-binding protein [Acidaminococcus sp. D21]
 gi|226905311|gb|EEH91229.1| S1 RNA-binding protein [Acidaminococcus sp. D21]
          Length = 174

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + +FGAFV     + GL+HIS++S   V    D +     V VK++  
Sbjct: 4   EKGAVVDGIVTGITNFGAFVELPENKVGLIHISEVSNVFVKDVHDFLTVKQKVTVKVVSI 63

Query: 678 DDRGKIKLSMKVVDQNTGK 696
           D++GKI LSMK +     +
Sbjct: 64  DEKGKIGLSMKALMPPAEQ 82


>gi|326481772|gb|EGE05782.1| rRNA biogenesis protein RRP5 [Trichophyton equinum CBS 127.97]
          Length = 1738

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    KI  +    +              +V +I  G+V KV ++GAF+   G  
Sbjct: 1214 RLTVVDKENNKIQMTLKKSVLDPNYKPPFTLKELKVGQIVTGKVRKVEEYGAFIAIDGSA 1273

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV   + + ++ D V  K+L  D ++G+I L +K 
Sbjct: 1274 NLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQIALGLKA 1322



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+ + GA V F GA  G + +S++S   +   S     G  V V  L  D +  ++
Sbjct: 671 GTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERL 730

Query: 684 KLSMKV 689
            +S K 
Sbjct: 731 VVSCKD 736



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           G  V       GLV    ++  ++       +EG  V V++L  D + + ++L++K
Sbjct: 591 GLIVSLTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLK 646



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +V +I +G + +V + G FV         + +S LS   + +  D  +    V  +L   
Sbjct: 1159 KVGQIVRGFIRRVDNIGVFVTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVV 1218

Query: 678  D-DRGKIKLSMK--VVDQN 693
            D +  KI++++K  V+D N
Sbjct: 1219 DKENNKIQMTLKKSVLDPN 1237


>gi|300869072|ref|ZP_07113673.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
 gi|300332929|emb|CBN58869.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
          Length = 318

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
             +    +V  +  G++  +  +GA+V+  G    L+HIS++S      +  V K  D V
Sbjct: 202 EPMIKKLKVGDVVVGKIRGLKPYGAWVNI-GDVPALLHISEISHVPFDASDSVFKVNDEV 260

Query: 671 WVKLLDFDD-RGKIKLSMKVVDQNTG 695
            V +LD D  RG+I +S K ++   G
Sbjct: 261 KVMILDVDTVRGRISVSTKQLEPEPG 286


>gi|260584869|ref|ZP_05852614.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
          ATCC 700633]
 gi|260157526|gb|EEW92597.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
          ATCC 700633]
          Length = 51

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 4  VHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL 50
              +  +AGR L +ETG++A+Q++GAV+  YGE+ VL   V  + +
Sbjct: 3  KQVFQTTFAGRELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKM 49


>gi|124486118|ref|YP_001030734.1| translation initiation factor IF-2 subunit alpha
           [Methanocorpusculum labreanum Z]
 gi|124363659|gb|ABN07467.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanocorpusculum labreanum Z]
          Length = 257

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   ++    V +V DF AFV+      R GL+ I++++   +    D ++EG  V  K+
Sbjct: 7   PIEGELVVCSVTEVKDFAAFVNLDEYEGRQGLIPIAEIARGWIKYIRDYIREGQKVVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L  D+ RG I LS+K V+++  + 
Sbjct: 67  LHVDEHRGHIDLSLKDVNEHQRRE 90


>gi|330717901|ref|ZP_08312501.1| RNA-binding protein [Leuconostoc fallax KCTC 3537]
          Length = 125

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +  +G+V  +  +GAFV     + GL+HIS+  +  V   ++ +  G  V V +LD 
Sbjct: 4   KIGQKLRGKVTGIQPYGAFVMLNNHQQGLIHISECKSGVVKNLANELAVGKEVDVVVLDI 63

Query: 678 DD-RGKIKLSMKV 689
           +   GKI LS++ 
Sbjct: 64  EQYNGKISLSLRQ 76


>gi|284048932|ref|YP_003399271.1| RNA binding S1 domain protein [Acidaminococcus fermentans DSM
           20731]
 gi|283953153|gb|ADB47956.1| RNA binding S1 domain protein [Acidaminococcus fermentans DSM
           20731]
          Length = 162

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E   +  G V  + +FGAFV     + GL+HIS++S   V    D +K  D V VK++  
Sbjct: 4   EKGAVVDGIVTGITNFGAFVSLPENKVGLIHISEVSNVFVKDVHDFLKVKDKVTVKVVSI 63

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           DD+GKI LS+K +      P
Sbjct: 64  DDKGKIGLSLKALMPPAPAP 83


>gi|326471469|gb|EGD95478.1| rRNA biogenesis protein RRP5 [Trichophyton tonsurans CBS 112818]
          Length = 1827

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    KI  +    +              +V +I  G+V KV ++GAF+   G  
Sbjct: 1303 RLTVVDKENNKIQMTLKKSVLDPNYKPPFTLKELKVGQIVTGKVRKVEEYGAFIAIDGSA 1362

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV   + + ++ D V  K+L  D ++G+I L +K 
Sbjct: 1363 NLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQIALGLKA 1411



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+ + GA V F GA  G + +S++S   +   S     G  V V  L  D +  ++
Sbjct: 672 GTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERL 731

Query: 684 KLSMKV 689
            +S K 
Sbjct: 732 VVSCKD 737



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           G  V       GLV    ++  ++       +EG  V V++L  D + + ++L++K
Sbjct: 592 GLIVSLTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLK 647



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +V +I +G + +V + G FV         + +S LS   + +  D  +    V  +L   
Sbjct: 1248 KVGQIVRGFIRRVDNIGVFVTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVV 1307

Query: 678  D-DRGKIKLSMK--VVDQN 693
            D +  KI++++K  V+D N
Sbjct: 1308 DKENNKIQMTLKKSVLDPN 1326


>gi|237756866|ref|ZP_04585345.1| ribosomal protein S01 [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690975|gb|EEP60104.1| ribosomal protein S01 [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 566

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E         +V  + KG++ K+++ GA V      +G + +S+++ ER+   SD +K  
Sbjct: 424 EEWNEFISKYKVGDVVKGKIKKLIEKGAIVDLRENIEGFIPVSEIALERINIPSDKLKLH 483

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
             V  K++  D +  KI LS+K +
Sbjct: 484 QEVEAKIIKIDSENKKITLSIKQI 507



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E         +V  + +  V ++  FG  V      +G ++  ++S     K    +
Sbjct: 252 KALESNPWDKFDKDVGDVVEAAVKEINKFGVIVDV-DGVEGFIYNREISHFDYMKAKKNL 310

Query: 665 KEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           K GD V  K+++ D   + +KLS+K + +N 
Sbjct: 311 KAGDKVKAKIIELDKENRKLKLSIKALQENP 341



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 588 DDDGTVKIASSSLAEIEA--AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +  G   +  S    ++   + E  + ++ + +  K+  G+V K+ D  A +       G
Sbjct: 152 ERKGNPNVVISRKEALKEEVSAEKEKYLSVLQQGQKVV-GKVEKITDKVAVISIDNVVYG 210

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           ++  S+LS ++  K  DV+K GD++ + + +  D+  I  S+K ++ N  
Sbjct: 211 ILPKSELSWDKNKKFEDVLKAGDSIELVIKEIKDKKPI-FSLKALESNPW 259



 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++  AK+   D    K+  S  A  E   E          V  + + +V  V    AF+ 
Sbjct: 314 DKVKAKIIELDKENRKLKLSIKALQENPVEKFLKENP---VGSVIEAKVKDVKQKVAFID 370

Query: 639 FCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
             G  +G+V +        +   S V+KEG     K+L   ++ KI L MK + +     
Sbjct: 371 L-GEIEGIVKLEDATDNNNIKSISSVLKEGKVYKFKVLGV-EKDKILLGMKQLLEEEWNE 428

Query: 698 IV 699
            +
Sbjct: 429 FI 430


>gi|116207588|ref|XP_001229603.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
 gi|88183684|gb|EAQ91152.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
          Length = 1766

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDT 669
            +I D+ E   I  G+V KV +FGAF+   G     GL H S+++   V     +  EGD 
Sbjct: 1262 TIADLKEGQTI-TGKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNVKDARTLYNEGDR 1320

Query: 670  VWVKLLDFD-DRGKIKLSMK 688
            V  ++L  D ++ +I L +K
Sbjct: 1321 VKARVLKVDLEKKRINLGLK 1340



 Score = 44.5 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           G +V V+  GA V F G   G + +S++S   ++   +  + G T+ +K L   D
Sbjct: 641 GTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTLALKKLQIGD 695



 Score = 41.8 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           G  V+      GLV    LS   +       +EG  V  ++L  +  R +++L++K
Sbjct: 561 GLIVNIADGISGLVPEMHLSDVHLQHPEKKFREGMKVKARVLSTNPARHQLRLTLK 616


>gi|76798194|ref|ZP_00780445.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21]
 gi|77410770|ref|ZP_00787128.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111]
 gi|76586457|gb|EAO62964.1| hypothetical protein SAJ_0796 [Streptococcus agalactiae 18RS21]
 gi|77163149|gb|EAO74102.1| S1 RNA binding domain protein [Streptococcus agalactiae CJB111]
          Length = 747

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           IG+G + ++ I+E       ++ DD    +    +                 +V +  +G
Sbjct: 619 IGVGQETLKDIIEDLLKPGRDLRDDFEAPVLRHDV-----------LDVSDLKVGQELQG 667

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL----------STERVAKTSDVVKEGDTVWVKLL 675
            V  V+DFGAFV      DGL+H S+L              +   S  +  GD V V ++
Sbjct: 668 TVRNVVDFGAFVDIGVHEDGLIHQSRLIKRKRDKKTRKMPPLQHPSKYLSVGDIVTVWVV 727

Query: 676 DFD-DRGKIKLSM 687
           + D +R +I LS+
Sbjct: 728 EVDAERSRIGLSL 740


>gi|225016511|ref|ZP_03705703.1| hypothetical protein CLOSTMETH_00417 [Clostridium methylpentosum
           DSM 5476]
 gi|224950740|gb|EEG31949.1| hypothetical protein CLOSTMETH_00417 [Clostridium methylpentosum
           DSM 5476]
          Length = 717

 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 107/266 (40%), Gaps = 28/266 (10%)

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
           E+ G    + V    + +  A  P+   V+GI  G+ K+   +    D +G         
Sbjct: 465 EALGGVVESCVNQVGVDVNTASQPLLARVSGINAGVAKNITAYR---DENGSFTDRRQF- 520

Query: 491 FKVAGTDSGIT-----AMQMDMKIGGISENIMVMALQQAKRGRLHILNE-MSKVLSESRL 544
            KVA             +++      +    +     +A +  LHI    +  V S S  
Sbjct: 521 LKVAKLGKKAYEQCAGFLRIPAGDNLLDNTAVHPESYKAAKELLHICGYTLDDVASGSLA 580

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV-EQTGAKVNIDDDGTVKIASSSLAEI 603
            L E   R+       +++   IG G   +R IV E      +  D+    +  S + E+
Sbjct: 581 GLPEQANRIGY-----NKLSEQIGAGEPTLRDIVSELMKPGRDPRDELPKPLLRSDVLEL 635

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           +  +  +             KG V  V+DFGAFV      DGLVH+SQL+   V    DV
Sbjct: 636 KDLKPGME-----------LKGTVRNVIDFGAFVDIGVHEDGLVHVSQLANRFVKHPLDV 684

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMK 688
           VK GD V V +LD D  R +I L+MK
Sbjct: 685 VKVGDVVTVWVLDVDLKRKRISLTMK 710


>gi|303313265|ref|XP_003066644.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
 gi|240106306|gb|EER24499.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1888

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    K+  +                   +  +I  G+V KV +FGAFV   G  
Sbjct: 1355 RITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTGKVRKVEEFGAFVSIDGTA 1414

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++  ++     + ++GD V  K+L  D  + +I L +K 
Sbjct: 1415 NLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKIDLKKDQISLGLKA 1463



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G  V + + GA + F GA  G + +S++S   +   S     G  V V  L  D ++G++
Sbjct: 725 GTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRL 784

Query: 684 KLSMKV 689
            +S K 
Sbjct: 785 VVSCKD 790



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 608  EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +   +  D  +VN I +G V ++ D G FV         V +S LS   + +  D  +  
Sbjct: 1290 DPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQDEFQID 1349

Query: 668  DTVWVKLLDFDDR-GKIKLSMK--VVDQNTGKPI 698
              V  ++   D    K+++++K   +D +   P+
Sbjct: 1350 QIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPL 1383



 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  + D G FV F G   G +    +  E + K         ++   +   D D  
Sbjct: 907 VTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSIDQDAQ 966

Query: 682 KIKLSMKVV 690
           +  L+MK V
Sbjct: 967 RFILTMKPV 975


>gi|169839094|ref|ZP_02872282.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7
           single-cell isolate TM7a]
          Length = 43

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCY 107
           + YA GK PGG+++RE++P  +EILISR+IDR IRPLF + +
Sbjct: 1   KFYASGKFPGGFIKRETKPGTDEILISRLIDRPIRPLFPEGF 42


>gi|17228573|ref|NP_485121.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
 gi|17130424|dbj|BAB73035.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
          Length = 305

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S  +  E+ ++ +G++  +  FG FV        L+HI Q+S + +     V + G T+ 
Sbjct: 191 SNFNQLEIGQLVEGKITGIKPFGVFVDL-NGLSALLHIKQVSQKFIESLEKVFQPGQTIK 249

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
             ++D D  +G++ +S + ++   G+
Sbjct: 250 AIVIDLDQGKGRVAISTRALENFPGE 275


>gi|302780137|ref|XP_002971843.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
 gi|300160142|gb|EFJ26760.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
          Length = 1807

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S         I  G++  +  FG FV        GL H+S++S + +     + K G  V
Sbjct: 1349 SSWKTFCAGDIVSGRIRSIEAFGMFVALADSDVVGLCHVSEVSDDFIQDLPTLYKVGQRV 1408

Query: 671  WVKLLDFD-DRGKIKLSMKV 689
             VK+L  D +  +I L MK 
Sbjct: 1409 QVKILKVDAETKRISLGMKA 1428



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 1/99 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    K++ +    + +++  + +  +      +  G +  + + G F+ F     GLVH
Sbjct: 511 DHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIGCFMEFYNHVKGLVH 570

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            S+L              G  V  ++L+ D  + ++ LS
Sbjct: 571 RSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLSLS 609



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E + S         +  G +  + D    V F     GLV I   S   +   S V  
Sbjct: 697 AAESLPSSIHQLSPMAVLPGYISVIHDKYCLVSFLDDVTGLVPIGNASDGYLEDLSQVFF 756

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            G +V  ++L+ D +  K  LS+K 
Sbjct: 757 VGQSVRAQVLEVDSENEKFVLSLKQ 781



 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G + +V   GA V   G + GL  +  +S     K S   + G  +  ++L +D ++
Sbjct: 456 LVHGVITRVEACGALVSLGGVK-GLCPVQHMSEYNRLKPSSKFEVGKKMKFRVLQYDHEK 514

Query: 681 GKIKLSMK 688
            K+ L+ K
Sbjct: 515 KKLSLTFK 522


>gi|323343209|ref|ZP_08083440.1| glucose-6-phosphate isomerase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463273|gb|EFY08468.1| glucose-6-phosphate isomerase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 543

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I +G +  +  +GAFV       GL+HIS++S + V      V +G+ +  K++D  + 
Sbjct: 9   QIVEGTITGIQPYGAFVSIDENTTGLIHISEISDDFVRDIRQFVSQGERIIAKIIDVSEG 68

Query: 681 -GKIKLSMKVVDQNTGKP 697
             +++LS+K ++ ++ K 
Sbjct: 69  PHQLRLSLKALNYSSRKD 86


>gi|326516488|dbj|BAJ92399.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 426

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           +    +T + E   + KG V K+  +GA +   G  R GL+HIS +S  RV   SD++K 
Sbjct: 269 KKAWEMTYLKEGA-LLKGNVHKIFPYGAQIRITGTNRSGLLHISNISQGRVLSVSDILKV 327

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            D + V ++  +   KI LS+  ++   G
Sbjct: 328 DDELKVLVIKSNVSDKIALSIADLESAPG 356


>gi|271964747|ref|YP_003338943.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
 gi|270507922|gb|ACZ86200.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
          Length = 278

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +  T V  V +I  G V K++ FGAFV      +GL+H+S+LST  +     VV+EG
Sbjct: 191 DPFQQFTRVIHVGQILHGPVTKLVPFGAFVRVADGVEGLIHLSELSTAPIETPDQVVQEG 250

Query: 668 DTVWVKLLDFD 678
           + V V + D D
Sbjct: 251 EEVTVIVTDID 261



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 604 EAAREMIRSITDVPEVN--KIYKGQVVKVMDFGAFVHFCGARD-------GLVHISQLST 654
            AA E  +    +  +   +   G V  +  FG FV              G + + +LS 
Sbjct: 92  RAAVENPQLWAFLKALRPGQRLSGTVAAIESFGIFVDLEDGPKHPVFPGVGFITMPELSW 151

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            R    S++V  G  +  ++L FD   G+ +LS++    + 
Sbjct: 152 RRFEDPSEIVSMGQHITCEVLTFDTTNGEARLSLRATQPDP 192


>gi|71083198|ref|YP_265917.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762372|ref|ZP_01264337.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062311|gb|AAZ21314.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718174|gb|EAS84824.1| 30S ribosomal protein S1 [Candidatus Pelagibacter ubique HTCC1002]
          Length = 576

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I E+   KV   D   +++  S         E I +     E+NKIYK +VVK+MDFGA
Sbjct: 252 TIGEKHDLKVISVDLEKLQVGCSVKQLTPDPFENISNY----ELNKIYKVKVVKLMDFGA 307

Query: 636 FVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           F         L+H S+LS  ++      + K GD +   + + D ++ ++ +S ++   N
Sbjct: 308 FCELEKGLSTLLHSSELSWTKKNISAKKMFKVGDEIDCVITEIDKEKRRVAISHRLTTDN 367

Query: 694 T 694
            
Sbjct: 368 P 368



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK-VMDFGAFVHFCGAR 643
           + +D        S         +E    I +  +V  I KG  VK    FG F    G  
Sbjct: 171 IKLDKVRGNACVSRREIISSFKKEDKIKIVEKFKVGDIIKGAEVKGYSSFGCFFSVNGEL 230

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           D LVH+ ++S  RV    +V   G+   +K++  D ++ ++  S+K +  +  + I
Sbjct: 231 DVLVHLQEISYSRVNHPDEVFTIGEKHDLKVISVDLEKLQVGCSVKQLTPDPFENI 286


>gi|16082212|ref|NP_394659.1| translation initiation factor IF-2 subunit alpha [Thermoplasma
           acidophilum DSM 1728]
 gi|20532136|sp|Q9HIX3|IF2A_THEAC RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|10640514|emb|CAC12328.1| translation initiation factor eIF-2, alpha subunit related protein
           [Thermoplasma acidophilum]
          Length = 254

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            +P+   +   ++ +V +FGA          +G +HIS+++T  V      ++EG  V  
Sbjct: 5   PLPDNGDLVVVKITEVKNFGANGVLEEYPGVEGYIHISEVATGWVKHIRSYLREGQRVVC 64

Query: 673 KLLDFDDRGK-IKLSMKVVDQNTGKP 697
           K++  +   K + LS+K V+Q+  + 
Sbjct: 65  KVIGVNPERKVVDLSLKRVNQHQSRE 90


>gi|213863357|ref|ZP_03386612.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 52

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 38/52 (73%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           EV ++Y G+V +++DFGAFV   G ++GLVHISQ++ +RV K +D ++ G  
Sbjct: 1   EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 52


>gi|305680859|ref|ZP_07403666.1| Tex-like protein N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659064|gb|EFM48564.1| Tex-like protein N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 776

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 19/148 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK- 621
           + ++IG    + R            DD   +   +  LAE++      R         + 
Sbjct: 583 VADLIGNTAVLSRL-----KPTDFADDTFGIPTVTDILAELDKPGRDPRPEFTTATFKEG 637

Query: 622 -----------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-T 669
                      I +G V  V  FGAFV      DGLVH+S L+ + V+   D+V+ G   
Sbjct: 638 VEKLSDLTPGMILEGTVTNVAAFGAFVDVGVHHDGLVHVSALANKYVSDPHDIVRSGQVV 697

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
               +    +R +I LSM+ +D   G+P
Sbjct: 698 KVKVMDVDVERHRIGLSMR-LDDEPGQP 724


>gi|154359308|gb|ABS79676.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359310|gb|ABS79677.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359312|gb|ABS79678.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359314|gb|ABS79679.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359316|gb|ABS79680.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359318|gb|ABS79681.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359320|gb|ABS79682.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359322|gb|ABS79683.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359324|gb|ABS79684.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359326|gb|ABS79685.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359328|gb|ABS79686.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359330|gb|ABS79687.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359332|gb|ABS79688.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359334|gb|ABS79689.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359336|gb|ABS79690.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359338|gb|ABS79691.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359340|gb|ABS79692.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359342|gb|ABS79693.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359344|gb|ABS79694.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359346|gb|ABS79695.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|154359348|gb|ABS79696.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359350|gb|ABS79697.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359352|gb|ABS79698.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359358|gb|ABS79701.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359362|gb|ABS79703.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359364|gb|ABS79704.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359366|gb|ABS79705.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359368|gb|ABS79706.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359370|gb|ABS79707.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
 gi|154359372|gb|ABS79708.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 171

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 102 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 160

Query: 679 -DRGKIKLSMK 688
            DRG++ LS K
Sbjct: 161 RDRGRVSLSTK 171


>gi|20093857|ref|NP_613704.1| translation initiation factor IF-2 subunit alpha [Methanopyrus
           kandleri AV19]
 gi|23821747|sp|Q8TY86|IF2A_METKA RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|19886786|gb|AAM01634.1| Translation initiation factor eIF2-alpha [Methanopyrus kandleri
           AV19]
          Length = 267

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M R + D+PE  +I    V +V D GAFV        DG +HIS++++  V    D VKE
Sbjct: 1   MPRKLRDLPEEGEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVASGWVKNIRDYVKE 60

Query: 667 GDTVWVKLLDFDDRGKI-KLSMKVVDQNTGKP 697
           G  V  K++  + + K   LS++ V  +  K 
Sbjct: 61  GQKVVAKVIRVNPKRKYANLSLRKVTDHQRKE 92


>gi|77413082|ref|ZP_00789283.1| S1 RNA binding domain protein [Streptococcus agalactiae 515]
 gi|77160875|gb|EAO71985.1| S1 RNA binding domain protein [Streptococcus agalactiae 515]
          Length = 764

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           IG+G + ++ I+E       ++ DD    +    +                 +V +  +G
Sbjct: 636 IGVGQETLKDIIEDLLKPGRDLRDDFEAPVLRHDV-----------LDVSDLKVGQELQG 684

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVA----------KTSDVVKEGDTVWVKLL 675
            V  V+DFGAFV      DGL+H S+L   +              S  +  GD V V ++
Sbjct: 685 TVRNVVDFGAFVDIGVHEDGLIHQSRLIKRKRDKKTRKMPPLPHPSKYLSVGDIVTVWVV 744

Query: 676 DFD-DRGKIKLSM 687
           + D +R +I LS+
Sbjct: 745 EVDAERSRIGLSL 757


>gi|88602418|ref|YP_502596.1| translation initiation factor IF-2 subunit alpha [Methanospirillum
           hungatei JF-1]
 gi|88187880|gb|ABD40877.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanospirillum hungatei JF-1]
          Length = 264

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++    V  V DF AFV       R+GL+ I++++   +    D ++EG  V  K+
Sbjct: 7   PEQGELVVCSVQNVKDFVAFVTLDEYNNREGLIPIAEVARGWIKYIRDHIREGQKVVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L+ D  +G I LS+K V+++  + 
Sbjct: 67  LNVDPQKGHIDLSLKDVNEHQRRE 90


>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
 gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
          Length = 246

 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
            ++G++    GS+    G+T+ IV V    RE        +  +  +      F P A  
Sbjct: 1   MKLGVVSTAKGSAYLELGNTKVIVSV-FDPRE---IPKQNTFRELGELYCDLKFSPFACV 56

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
                      E        +A+ PV+ +     + + I + + E DGS   A +  + L
Sbjct: 57  HRKN-PQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGL 115

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           AL DA + +   V    + +  D     I  D +  E+ L 
Sbjct: 116 ALSDATISMFDIVTATTVAVYGD----RIYLDPTLAEERLC 152



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 16/199 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNY---QERTYAVGKIPGGYLRRESR 83
           + G+     G T V+ +V   R +     F  L   Y   +   +A         R+  +
Sbjct: 9   AKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFAC------VHRKNPQ 62

Query: 84  PTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
               E  ++  + ++++P+         +  +  NV++ D      V  + AA  AL  +
Sbjct: 63  TDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAV--ITAAGLALSDA 120

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVL 201
            +     V    V     +  L+P L E++  L+   SG    + + +L     + ++ L
Sbjct: 121 TISMFDIVTATTVAVYGDRIYLDPTLAEERLCLEGSRSGNHGVITLAKLHTLDQTSEIRL 180

Query: 202 DA---IIFGHNECKPVIEA 217
                +    N C+ + EA
Sbjct: 181 AGNVSLDLLKNACQRLNEA 199


>gi|156081953|ref|XP_001608469.1| RNA helicase [Plasmodium vivax SaI-1]
 gi|148801040|gb|EDL42445.1| RNA helicase, putative [Plasmodium vivax]
          Length = 1218

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF----CGARDGLVHISQL--STERVAKTSDVVKEGDTVWV 672
           VN I+ G V KVMDFG FV F     G ++GLVH + +  + +RVA   +  + G  V V
Sbjct: 239 VNNIFSGTVSKVMDFGIFVSFRSEPGGYKEGLVHCTDILPNRKRVANMREQFQRGMKVKV 298

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           K+       KI L+M  VDQ TGK +V
Sbjct: 299 KVKALFGE-KISLNMAEVDQKTGKNLV 324


>gi|66357222|ref|XP_625789.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
 gi|46226980|gb|EAK87946.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
          Length = 244

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 26/216 (12%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R DGR +     ISA VG+    +GS+ F  G ++ I  V           +  S  + 
Sbjct: 8   IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATV--------WRPEEASSNKC 59

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             ++              R+G P            R    V+   +     + I  +I  
Sbjct: 60  KSYL--------EVILRPRIGQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVS 111

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG----LVKDGDDFIILSDISGDEDHLG 487
            DG      +  + LAL+D G+P+      +++        + D   ++ D +  E    
Sbjct: 112 EDGPILPVCINAAVLALIDLGIPMEFFPLAVSIAESSHFYGERDISHLMLDPTQSEFEQC 171

Query: 488 HMDFKVAGTD------SGITAMQMDMKIGGISENIM 517
                +          S IT     +    + + I 
Sbjct: 172 ISCSTIVINTTEKNIFSCITNKGTGISHNELLDEIH 207



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 37/216 (17%)

Query: 9   IEWAGRPLKLETGRIARQS------DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVN 62
           I + GR   LE G I+         +G+   + G + V+ATV         +    L V 
Sbjct: 8   IRYDGRT-NLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASSNKCKSYLEVI 66

Query: 63  YQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQH 120
            + R                +P E+  LI   I R    +  F+   +    + + ++  
Sbjct: 67  LRPRI--------------GQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVSE 112

Query: 121 DLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN---GQY-----VLNPRLDEDQG 172
           D    P  V + AA  AL+  G+P E   +   +   +   G+      +L+P   E + 
Sbjct: 113 DGPILP--VCINAAVLALIDLGIPMEFFPLAVSIAESSHFYGERDISHLMLDPTQSEFEQ 170

Query: 173 SLD---LFVSGTQDAVLM-VELEANQLSEDVVLDAI 204
            +    + ++ T+  +   +  +   +S + +LD I
Sbjct: 171 CISCSTIVINTTEKNIFSCITNKGTGISHNELLDEI 206


>gi|326526035|dbj|BAJ93194.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 240

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           +    +T + E   + KG V K+  +GA +   G  R GL+HIS +S  RV   SD++K 
Sbjct: 83  KKAWEMTYLKEGA-LLKGNVHKIFPYGAQIRITGTNRSGLLHISNISQGRVLSVSDILKV 141

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            D + V ++  +   KI LS+  ++   G
Sbjct: 142 DDELKVLVIKSNVSDKIALSIADLESAPG 170


>gi|225021095|ref|ZP_03710287.1| hypothetical protein CORMATOL_01107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946095|gb|EEG27304.1| hypothetical protein CORMATOL_01107 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 768

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 19/148 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK- 621
           + ++IG        ++ Q       DD   +   +  LAE++      R         + 
Sbjct: 583 VADLIGNTA-----VLSQLKPTDFADDTFGIPTVTDILAELDKPGRDPRPEFTTATFKEG 637

Query: 622 -----------IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-T 669
                      I +G V  V  FGAFV      DGLVH+S L+ + V+   D+V+ G   
Sbjct: 638 VEKLSDLTPGMILEGTVTNVAAFGAFVDVGVHHDGLVHVSALANKYVSDPHDIVRSGQVV 697

Query: 670 VWVKLLDFDDRGKIKLSMKVVDQNTGKP 697
               +    +R +I LSM+ +D   G+P
Sbjct: 698 KVKVMDVDVERHRIGLSMR-LDDEPGQP 724


>gi|22536896|ref|NP_687747.1| transcriptional accessory protein Tex [Streptococcus agalactiae
           2603V/R]
 gi|25010809|ref|NP_735204.1| hypothetical protein gbs0754 [Streptococcus agalactiae NEM316]
 gi|76788092|ref|YP_329480.1| S1 RNA-binding domain-containing protein [Streptococcus agalactiae
           A909]
 gi|22533747|gb|AAM99619.1|AE014225_2 transcriptional accessory protein Tex, putative [Streptococcus
           agalactiae 2603V/R]
 gi|23095163|emb|CAD46398.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563149|gb|ABA45733.1| S1 RNA binding domain protein [Streptococcus agalactiae A909]
          Length = 720

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           IG+G + ++ I+E       ++ DD    +    +                 +V +  +G
Sbjct: 592 IGVGQETLKDIIEDLLKPGRDLRDDFEAPVLRHDV-----------LDVSDLKVGQELQG 640

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQL----------STERVAKTSDVVKEGDTVWVKLL 675
            V  V+DFGAFV      DGL+H S+L              +   S  +  GD V V ++
Sbjct: 641 TVRNVVDFGAFVDIGVHEDGLIHQSRLIKRKRDKKTRKMPPLQHPSKYLSVGDIVTVWVV 700

Query: 676 DFD-DRGKIKLSM 687
           + D +R +I LS+
Sbjct: 701 EVDAERSRIGLSL 713


>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
 gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
          Length = 261

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 34/264 (12%)

Query: 296 EDIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            ++ +++ R  + +   K  R DGR    +RDI+ + G++ +  GS++   GDTQ +V V
Sbjct: 4   SEVISRLKRDYIYNLMLKGEREDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGV 63

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH-- 410
                + +              +      P A+ +    G P  + I  GR+  R I   
Sbjct: 64  -----KMQVGTPFPDSPAEGVIITSMELNPIASPDFEA-GPPREKAIEMGRIVDRGIRES 117

Query: 411 ------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM-------------DA 451
                  +     +  + + I   +  + G+   A   G+  ALM             D 
Sbjct: 118 GAIDINKLCITEGEEVWMVFIDVHVLNNSGNILDAASLGAIAALMTTTVPSEREGKGEDY 177

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
            +P+ +   G+++  + D     ++ D +  E+ +      ++    G          G 
Sbjct: 178 PMPVREMPVGVSLVKIGDE----MVLDPTYGEESVCETRITISSNQDGSICSMQKSGSGS 233

Query: 512 ISENIMVMALQQAKRGRLHILNEM 535
           +S   +V A + AK     I  + 
Sbjct: 234 LSPAQVVKASKIAKEKGEIIREKY 257



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 41/226 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVY------DRSLKDGQDFFPLTVNYQERT 67
           R + LETG I + ++G+ +  YG+T V+  V          S  +G     +  + +   
Sbjct: 34  RDIALETGIIDK-AEGSAMVQYGDTQVMVGVKMQVGTPFPDSPAEGV----IITSMELNP 88

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ----VIINVMQ 119
            A      G       P E  I + R++DR IR       +K    E +    V I+V  
Sbjct: 89  IASPDFEAGP------PREKAIEMGRIVDRGIRESGAIDINKLCITEGEEVWMVFIDVHV 142

Query: 120 HDLESSPHVVSMVAASAALMLSGLP---------FEGPVVGAQVD----YINGQYVLNPR 166
            +   +    + + A AALM + +P         +  PV    V      I  + VL+P 
Sbjct: 143 LNNSGNILDAASLGAIAALMTTTVPSEREGKGEDYPMPVREMPVGVSLVKIGDEMVLDPT 202

Query: 167 LDEDQG-SLDLFVSGTQDA-VLMVE-LEANQLSEDVVLDAIIFGHN 209
             E+      + +S  QD  +  ++   +  LS   V+ A      
Sbjct: 203 YGEESVCETRITISSNQDGSICSMQKSGSGSLSPAQVVKASKIAKE 248


>gi|326775294|ref|ZP_08234559.1| Tex-like protein [Streptomyces cf. griseus XylebKG-1]
 gi|326655627|gb|EGE40473.1| Tex-like protein [Streptomyces cf. griseus XylebKG-1]
          Length = 828

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
           E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK GD      +  
Sbjct: 671 EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKVKVMDV 730

Query: 677 FDDRGKIKLSMKVVDQN 693
              R +I L++++ D+ 
Sbjct: 731 DVPRKRISLTLRLDDEP 747


>gi|319744762|gb|EFV97103.1| YhgF like protein [Streptococcus agalactiae ATCC 13813]
          Length = 747

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 567 IGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           IG+G + ++ I+E       ++ DD    +    +                 +V +  +G
Sbjct: 619 IGVGQETLKDIIEDLLKPGRDLRDDFEAPVLRHDV-----------LDVSDLKVGQELQG 667

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVA----------KTSDVVKEGDTVWVKLL 675
            V  V+DFGAFV      DGL+H S+L   +              S  +  GD V V ++
Sbjct: 668 TVRNVVDFGAFVDIGVHEDGLIHQSRLIKRKRDKKTRKMPPLPHPSKYLSVGDIVTVWVV 727

Query: 676 DFD-DRGKIKLSM 687
           + D +R +I LS+
Sbjct: 728 EVDAERSRIGLSL 740


>gi|75909936|ref|YP_324232.1| 30S ribosomal protein S1P [Anabaena variabilis ATCC 29413]
 gi|75703661|gb|ABA23337.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
          Length = 302

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S  +  E+ ++ +G++  +  FG FV        L+HI Q+S + +     V + G T+ 
Sbjct: 191 SNFNQLEIGQLVEGKITGIKPFGVFVDL-NGLSALLHIKQVSQKFIESLEKVFQPGQTIK 249

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
             ++D D  +G++ +S + ++   G+
Sbjct: 250 AIVIDLDQGKGRVAISTRALENFPGE 275


>gi|315046956|ref|XP_003172853.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
 gi|311343239|gb|EFR02442.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
          Length = 1821

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    KI  +                   +V +I  G+V KV ++GAF+   G  
Sbjct: 1298 RLTVVDKDNNKIQMTLKKSALDPNYKPPFALKDLKVGQIVTGKVRKVEEYGAFIAIDGSA 1357

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV   + + ++ D V  K+L  D ++G+I L +K 
Sbjct: 1358 NLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQIALGLKA 1406



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+ + GA V F G+  G + +S++S   +   S     G  V V  L  D +  ++
Sbjct: 667 GTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAESERL 726

Query: 684 KLSMKV 689
            +S K 
Sbjct: 727 VVSCKD 732



 Score = 44.9 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 608  EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            +   +  +  +V +I +G + +V + G FV         + +S LS   + +  D  +  
Sbjct: 1233 DPEITSINQLKVGQIVRGFIRRVDNIGIFVTLGHNVTAYIRVSDLSDSFLKEWKDEFQVD 1292

Query: 668  DTVWVKLLDFD-DRGKIKLSMK--VVDQN 693
              +  +L   D D  KI++++K   +D N
Sbjct: 1293 QLIQGRLTVVDKDNNKIQMTLKKSALDPN 1321



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           G  V       GLV    ++  ++       +EG  V V++L  D  R +++L++K
Sbjct: 587 GLIVSLTDNISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQRRQLRLTLK 642


>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [uncultured methanogenic
           archaeon RC-I]
 gi|121687882|sp|Q0W2Y7|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
 gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [uncultured methanogenic
           archaeon RC-I]
          Length = 260

 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 102/264 (38%), Gaps = 30/264 (11%)

Query: 296 EDIQAKVVRTVML---DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           ED+ A++ R  +    ++  R DGR  +  R IS + G++ +  GS+    GD+Q +V V
Sbjct: 3   EDVIAEIKRDYIYSLANQGDRADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGV 62

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH-- 410
            +   E   + D+         + +   +P A+      G P    I   R+  R +   
Sbjct: 63  KIQPGEP--FPDT---PDSGVIITNLELVPLASP-TFESGPPREDAIELARVVDRGVRES 116

Query: 411 ------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---------I 455
                  +  ++ Q  + + I   + + DG+   A   G+  AL    +P         +
Sbjct: 117 GAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDV 176

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
             P+  + +G+        I+ D S DE+ +      V     G  +      +G ++ +
Sbjct: 177 KLPLNDVPIGVTAVNIGGAIMLDPSLDEESVAPCKLTVITNKEGAISGMQKSGVGTLTPD 236

Query: 516 ----IMVMALQQAKRGRLHILNEM 535
               I+ +A ++A   R  +    
Sbjct: 237 QINHIIRLAKEKANVLREKLEGIQ 260



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 35/236 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +ETG I + ++G+     G++ V+  V     ++ G+ F P T +       +  +
Sbjct: 33  RAISVETGVINK-AEGSARVKIGDSQVVVGV----KIQPGEPF-PDTPDSGVIITNLELV 86

Query: 74  P-GGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ----VIINVMQHDLES 124
           P          P E+ I ++R++DR +R       SK      Q    V I+V   D + 
Sbjct: 87  PLASPTFESGPPREDAIELARVVDRGVRESGAIDLSKLCIESGQKVWMVFIDVHVLDHDG 146

Query: 125 SPHVVSMVAASAALMLSGLPFEG--------------PVVGAQVDYINGQYVLNPRLDED 170
           +    + + A AAL  + +P                 P+    V+ I G  +L+P LDE+
Sbjct: 147 NLMDAASLGAIAALKATKIPNSKFGLGEDVKLPLNDVPIGVTAVN-IGGAIMLDPSLDEE 205

Query: 171 QGS---LDLFVSGTQDAVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
             +   L   ++  + A+  ++      L+ D +   I     +   + E +  + 
Sbjct: 206 SVAPCKLT-VITNKEGAISGMQKSGVGTLTPDQINHIIRLAKEKANVLREKLEGIQ 260


>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
           739]
 gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
           739]
          Length = 269

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 95/275 (34%), Gaps = 32/275 (11%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           + +   I    +  ++ +   R+DGR  E  R ++ +  ++++  GS+L   G+TQ +V 
Sbjct: 1   MEIMASIIKDHILQLLKED-KRIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLV- 58

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--- 408
                 + E                +  F+P A+      G P    I   R+  R    
Sbjct: 59  ----GIKVELGEPFPDLPDMGVITTNVEFVPLASPTFEP-GPPDESAIELARIIDRGIRE 113

Query: 409 -----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK------ 457
                +  ++    +    + I   + + DG+   A+  G+  AL+   +P         
Sbjct: 114 SQAIDLEKLVIVPGKLVRVIFIDVHVLDHDGNLLDASGIGAIAALLSTKIPKVDYNEEIE 173

Query: 458 -----------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
                      PV  I + +        ++ D + +E+ +      +   ++G  +    
Sbjct: 174 EVVMLEEYEKLPVKRIPIPVTLAKIGGNLVVDPNFEEEQVMDGKITITTDENGYISAVQK 233

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            + G      +V A+  A +    +   +   + E
Sbjct: 234 SEGGSFKLEEVVYAVDLAYKKAEEVRKVVFGAIKE 268



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 91/238 (38%), Gaps = 47/238 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQ-DFFPLTVNYQERTYAVG 71
           RPL +ET  I + ++G+ L   G T VL  + V          D   +T N +    A  
Sbjct: 31  RPLTVETNVIEK-AEGSALVKLGNTQVLVGIKVELGEPFPDLPDMGVITTNVEFVPLASP 89

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
               G       P E+ I ++R+IDR IR           +          + ++V+ HD
Sbjct: 90  TFEPGP------PDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIFIDVHVLDHD 143

Query: 122 LESSPHVVSMVAASAALMLSGLP---FEGPVVGA------------QV------DYINGQ 160
             +     S + A AAL+ + +P   +   +               ++        I G 
Sbjct: 144 G-NLLD-ASGIGAIAALLSTKIPKVDYNEEIEEVVMLEEYEKLPVKRIPIPVTLAKIGGN 201

Query: 161 YVLNPRLDEDQGSLDLFVSGTQD---AVLMVE-LEANQLSEDVVLDAIIFGHNECKPV 214
            V++P  +E+Q  +D  ++ T D    +  V+  E      + V+ A+   + + + V
Sbjct: 202 LVVDPNFEEEQV-MDGKITITTDENGYISAVQKSEGGSFKLEEVVYAVDLAYKKAEEV 258


>gi|182434777|ref|YP_001822496.1| putative transcription accessory protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178463293|dbj|BAG17813.1| putative transcription accessory protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 843

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
           E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK GD      +  
Sbjct: 684 EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKVKVMDV 743

Query: 677 FDDRGKIKLSMKVVDQN 693
              R +I L++++ D+ 
Sbjct: 744 DVPRKRISLTLRLDDEP 760


>gi|118092989|ref|XP_421739.2| PREDICTED: similar to KIAA0185 [Gallus gallus]
          Length = 1826

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-KGQVVKVMDFGAFVHFCGARDGLV 647
           D G   I     A I A +E     +       +   G V KVM FG FV F     GL 
Sbjct: 658 DKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLA 717

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
               +S + V  T D    G TV  K++  D ++ ++ LS+KV + ++G
Sbjct: 718 PKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVSECSSG 766



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE----------IEA 605
           M +        +     +   I++Q   K N+ D+   ++   + AE          +  
Sbjct: 426 MQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQ 485

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           ++  + S  +  E   I  G VV   +FG  V F     GLV  ++LS+E ++    V  
Sbjct: 486 SKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFH 545

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMK 688
           +G  V V +L  +  + ++ LS +
Sbjct: 546 DGQVVKVMVLKCEPQQERLLLSFR 569



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 618  EVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   I  G V K++   G  +   G + G V I  LS +         K G  V   +L 
Sbjct: 1181 EPGTITVGMVAKMIPHIGLTITLPGGKAGKVSIFHLSDKYTESPLSDFKIGKVVRCYILS 1240

Query: 677  FDDRGKIKLSMKV 689
             ++ GKI+LS++ 
Sbjct: 1241 -NENGKIQLSLRQ 1252



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
               S   +I  AR +            + +G+V+ +   G  V       GLV    L+
Sbjct: 388 MCIVSLKHQIIEARFLRYEDIHT---GDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLA 444

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
              + +       GD V  ++L+ +    K+ L++K     +  P++
Sbjct: 445 DVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVL 491



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 604  EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS-- 661
                ++  +     +  ++ +G V  V   G F     +  G +    +S   V K S  
Sbjct: 1261 RKVEDVEITCIKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLY 1320

Query: 662  -DVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
               + EG  +  K+LD + +   ++LS+  + ++T  P V
Sbjct: 1321 EKYLPEGKLLTAKVLDVNKKENHVELSL--LPEDTEMPSV 1358


>gi|293375098|ref|ZP_06621388.1| general stress protein 13 [Turicibacter sanguinis PC909]
 gi|325840447|ref|ZP_08167046.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
 gi|292646292|gb|EFF64312.1| general stress protein 13 [Turicibacter sanguinis PC909]
 gi|325490314|gb|EGC92643.1| S1 RNA binding domain protein [Turicibacter sp. HGF1]
          Length = 123

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I +G+V  +  +GAFV      +GL+HIS+LS   V    D V  G+ + VK+
Sbjct: 1   MKIKEGSIVRGKVTGIQPYGAFVQLSEDCNGLIHISELSDGYVKDIRDFVHIGEFIDVKV 60

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L F+ +  + +LS++ V  N
Sbjct: 61  LKFNSESLQARLSLRGVANN 80


>gi|229188347|ref|ZP_04315396.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
 gi|228595146|gb|EEK52916.1| RNA binding S1 domain protein [Bacillus cereus ATCC 10876]
          Length = 139

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +       GLVHIS+++   V   +D +K GD V VK+++ +  GKI LS+K   +
Sbjct: 1   MELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKE 56


>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
          Length = 278

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 308 LDKKVRMDGRDSETV--RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDS 365
              + R+DG   + +  R +  +VG+L ++ GS+   RG T+ +  V  G RE  + +D 
Sbjct: 32  SKSQYRLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASV-FGPREVSKKLDF 90

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRI 425
              +      + Y   P A       G    +E   G    + +   +         + +
Sbjct: 91  --SSTAGSLNVEYKEAPFA---SRSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDV 145

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
              + E DGS+    +  ++LAL DA + +   V G ++
Sbjct: 146 CITVLEDDGSAIPTAITAAALALSDASINLFDLVIGASV 184



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNY 63
           E + + RPL  E G I  QS G+     G T VLA+V   R +    DF      L V Y
Sbjct: 43  EKDISVRPLFCEVG-ILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGSLNVEY 101

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHD 121
           +E  +A         R + R    E  +   + +++R         K+   V I V++ D
Sbjct: 102 KEAPFAS--------RSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVLEDD 153

Query: 122 L 122
            
Sbjct: 154 G 154


>gi|325180379|emb|CCA14782.1| rRNA biogenesis protein rrp5 putative [Albugo laibachii Nc14]
          Length = 1939

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKT-SDVVKEGDT 669
            ++T++ E   I  G+V K+  +G FV        GL HIS++  ER+ K  +++ KEGD+
Sbjct: 1460 TMTNLKEG-MIVTGKVSKIQSYGVFVRLNQSNLSGLCHISEIGEERIQKPLTELFKEGDS 1518

Query: 670  VWVKLLDFDDRGKIKLSMK 688
            V  K+L   + G+I L  K
Sbjct: 1519 VKAKVLKV-ENGRISLGFK 1536



 Score = 44.5 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              E   +  G + K+  FG  V F G   GLV  S L    +    D    G  V  ++
Sbjct: 593 YKAENGLVTMGYITKIAPFGVIVSFYGGVHGLVPASTLHQAGIECFEDAYTLGQVVRARI 652

Query: 675 LDFD-DRGKIKLSM 687
              D ++ ++ LS+
Sbjct: 653 TYCDTEKQRLLLSL 666


>gi|154359306|gb|ABS79675.1| At5g30510-like protein [Arabidopsis halleri subsp. halleri]
          Length = 175

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  +  +GAF+   G  +GL+H+SQ+S +RV+  + V++ GDT+ V +L  D
Sbjct: 105 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 163

Query: 679 -DRGKIKLSMK 688
            DRG++ LS K
Sbjct: 164 RDRGRVSLSTK 174


>gi|283777853|ref|YP_003368608.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM
           6068]
 gi|283436306|gb|ADB14748.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068]
          Length = 1147

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E      G V+ V+DFG FV    +  GLVHIS+L+   +    +VV  GD + V +++ 
Sbjct: 916 EPGMELSGSVLNVVDFGVFVDIGLSDSGLVHISRLADRYIRDPHEVVGVGDVLKVWVVEV 975

Query: 678 DDRGKIKLSMKVVDQNTGKP 697
           D   + ++S+  +   + KP
Sbjct: 976 DKSRR-RVSLTAIAPGSEKP 994


>gi|313206084|ref|YP_004045261.1| tex-like protein [Riemerella anatipestifer DSM 15868]
 gi|312445400|gb|ADQ81755.1| Tex-like protein [Riemerella anatipestifer DSM 15868]
 gi|315023735|gb|EFT36738.1| putative RNA binding protein with S1 RNA-binding domain [Riemerella
           anatipestifer RA-YM]
 gi|325336473|gb|ADZ12747.1| Transcriptional accessory protein [Riemerella anatipestifer RA-GD]
          Length = 708

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 558 IPPDQIRNVIGMGGKV-------IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMI 610
           +  +++   +G+  K        I+ I+ +      +   G   I           R+  
Sbjct: 561 VTVEKMAKDLGLKTKELIANKEQIQKIIPEKYTTPEVGILGIKDILKELEKPGLDPRQQA 620

Query: 611 RSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +     P +  I          G V  +  FG FV       GL+HISQL+   V+  ++
Sbjct: 621 KVFEFNPNIKTIADIKVGLSLPGIVNNITAFGCFVDIGIKESGLIHISQLTDGFVSDVNE 680

Query: 663 VVKEGDTVWVKLLDFDD-RGKIKL 685
           VVK   TV V++L+ D+ R +I L
Sbjct: 681 VVKLHQTVEVQVLEIDEVRKRIGL 704


>gi|298708733|emb|CBJ30695.1| Plastid ribosomal protein S1 [Ectocarpus siliculosus]
          Length = 441

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R ++           + +G V  +  +GAFV   G   GL+HISQ+S +R+     +++ 
Sbjct: 275 RAVLEQEMKELSRGDVVEGHVKAIKPYGAFVEIRGM-SGLLHISQISFDRIEDLPSIMQM 333

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
           G  +   ++D D   G+I LS K ++   G
Sbjct: 334 GMKLKCMIIDHDKVNGRIALSTKTLEPEPG 363



 Score = 38.7 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           E  +I KG V++    GA +         +   + S + V     +++  +T+ V ++ D
Sbjct: 121 ERGEIVKGTVIQFEPSGALIDIGAKATAYMPAREASLDEVESMEGLLELDETMDVMIISD 180

Query: 677 FDDRGKIKLSMKVVD 691
            ++ G++++S++ + 
Sbjct: 181 ENEMGQVQVSIRRIQ 195


>gi|302505220|ref|XP_003014831.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
 gi|291178137|gb|EFE33928.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
          Length = 1820

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    KI  S                   ++ +I  G+V KV ++GAF+   G  
Sbjct: 1297 RLTVVDKDNNKIQMSLKKSALDPNYKPPFNLKDLKIGQIVTGKVRKVEEYGAFIAIDGSA 1356

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV   + + ++ D V  K+L  D ++G+I L +K 
Sbjct: 1357 NLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQIALGLKA 1405



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 605  AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A  +   +  D  +V +I +G V +V + G FV         + +S LS   + +  D  
Sbjct: 1229 AVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTAYIRVSDLSDSFLKEWKDEF 1288

Query: 665  KEGDTVWVKLLDFD-DRGKIKLSMK--VVDQN 693
            +    V  +L   D D  KI++S+K   +D N
Sbjct: 1289 QVDQLVQGRLTVVDKDNNKIQMSLKKSALDPN 1320



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+ + GA V F GA  G + +S++S   +   S     G  V +  L  D +  ++
Sbjct: 666 GTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNIHALTVDAENERL 725

Query: 684 KLSMKV 689
            +S K 
Sbjct: 726 VVSCKD 731



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           G  V    +  GLV    ++  ++       +EG  V V++L  D + + ++L++K
Sbjct: 586 GLIVSLTDSISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLK 641


>gi|118579188|ref|YP_900438.1| 30S ribosomal protein S1 [Pelobacter propionicus DSM 2379]
 gi|118501898|gb|ABK98380.1| SSU ribosomal protein S1P [Pelobacter propionicus DSM 2379]
          Length = 407

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G V ++  FGAFV      DGL+HIS+L   +R++   +V+ EG  V VK+   D   +
Sbjct: 298 GTVARLTPFGAFVTLPCGLDGLIHISKLGGGKRISHPREVLSEGQAVEVKVEGIDRESR 356



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
               G V  + DFGAFV   G  +GLV +S++   RV   ++++  G  V V +   D +
Sbjct: 209 MTLDGTVSSLRDFGAFVDI-GGLEGLVPLSEIGWSRVKDAAELLSVGQKVQVVVKSLDQE 267

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I LS+K    +  
Sbjct: 268 RNRISLSIKETLVDPW 283


>gi|195499795|ref|XP_002097098.1| GE26036 [Drosophila yakuba]
 gi|194183199|gb|EDW96810.1| GE26036 [Drosophila yakuba]
          Length = 227

 Score = 67.6 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 16/176 (9%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R +  +   L R  GS ++ +G T  I  V LG  E +    S+ G+      +  N
Sbjct: 6   DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAV-LGPIEVKTQNLSIDGSY-----LECN 59

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A       G P  +E       R  +   L   A     + +  +  E  GS    
Sbjct: 60  YRPKA-------GLPQVKERIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
            V  + LA++  G+P+    A +   ++ +  +++   D    E       F  A 
Sbjct: 113 AVNCACLAMLIGGLPLKCSFAAVHC-IINEQGEYV--LDPDQSETLHQRASFTFAF 165



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 22/186 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E   ++R  DG+V+ + G T ++  V+    +K      D   L  NY+ +    
Sbjct: 9   RQMHCEFNPLSR-CDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG-- 65

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
             +P    R       + + ++ + +   R   S       Q+     + +   S    +
Sbjct: 66  --LPQVKERIREAAIRDVLELALLSEAHPRSKMS------VQI----QELEDRGSIDACA 113

Query: 131 MVAASAALMLSGLPFEGPVVGAQ-VDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVL 186
           +  A  A+++ GLP +        +    G+YVL+P   E    + S        +  +L
Sbjct: 114 VNCACLAMLIGGLPLKCSFAAVHCIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLL 173

Query: 187 MVELEA 192
           +V+ + 
Sbjct: 174 LVQTKG 179


>gi|114677473|ref|XP_001152117.1| PREDICTED: similar to Exosome component 5 isoform 1 [Pan
           troglodytes]
          Length = 197

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
           G     F    N L    G  S +   +  E    RL R     V+  T     ++ +V 
Sbjct: 25  GCSLRHFACEQNLLSRPDGSASFLQGVA--EKSRERLIRNTCEAVVLGTLHPRTSITVVL 82

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
           ++    GS     +  + +AL+DAGVP+     G+   L  DG   ++L   S  E    
Sbjct: 83  QVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGT--LVLDPTSKQEKEAR 140

Query: 488 HM 489
            +
Sbjct: 141 AV 142


>gi|327305835|ref|XP_003237609.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
 gi|326460607|gb|EGD86060.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
          Length = 1823

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    KI  +                   +V +I  G+V KV ++GAF+   G  
Sbjct: 1298 RLTVVDKDNNKIQMTLKKSALDPNYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSA 1357

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV   + + ++ D V  K+L  D ++G+I L +K 
Sbjct: 1358 NLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQIALGLKA 1406



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+ + GA V F GA  G + +S++S   +   S     G  V V  L  D +  ++
Sbjct: 667 GTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERL 726

Query: 684 KLSMKV 689
            +S K 
Sbjct: 727 IVSCKD 732



 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            ++ +I +G + +V + G FV         + +S LS   + +  D  +    V  +L   
Sbjct: 1243 KIGQIVRGFIRRVDNIGVFVTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVV 1302

Query: 678  D-DRGKIKLSMK--VVDQN 693
            D D  KI++++K   +D N
Sbjct: 1303 DKDNNKIQMTLKKSALDPN 1321



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           G  V    +  GLV    ++  ++       +EG  V V++L  D + + ++L++K
Sbjct: 587 GLIVSLTDSISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLK 642


>gi|229119724|ref|ZP_04248986.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
 gi|228663749|gb|EEL19327.1| RNA binding S1 domain protein [Bacillus cereus 95/8201]
          Length = 138

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +       GLVHIS+++   V   +D +K GD V VK+++ +  GKI LS+K   +
Sbjct: 1   MELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKE 56


>gi|326693063|ref|ZP_08230068.1| transcription accessory protein [Leuconostoc argentinum KCTC 3773]
          Length = 710

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 41/90 (45%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I +             + A  +      D  +     +G V  V+DFGAFV      DG
Sbjct: 621 DIVESLQKPGRDGRSEMVGALLKSDILHIDDLKPGMKLQGTVRNVVDFGAFVDLGVKHDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           LVHIS+L+  RV   +D+V  GD V V ++
Sbjct: 681 LVHISRLAKHRVKTPADIVAVGDIVDVWVV 710


>gi|227509466|ref|ZP_03939515.1| RNA binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191178|gb|EEI71245.1| RNA binding protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 136

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV    KG V  +  +G FV       GL+HIS+  +  V   + +   G+ V   ++D 
Sbjct: 15  EVGMKVKGVVTGIQPYGVFVDLGNQNQGLIHISECQSGYVEDINQLFSVGEIVSSLIIDI 74

Query: 678 DD-RGKIKLSMK 688
           D+  GKI LS +
Sbjct: 75  DEYTGKISLSTR 86


>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
           str. Fusaro]
 gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
           Fusaro]
          Length = 260

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 90/268 (33%), Gaps = 32/268 (11%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V   ++   +  +M+ K  R DGR  +  RDI  +  ++ +  GS+    GDTQ +V 
Sbjct: 2   SEVIATLKKDYIYNLMI-KGKRQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVG 60

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V L       + DS         + +    P A+ E    G P    I   R+  R I  
Sbjct: 61  VKLQPGTP--FPDS---QDEGVIITNLELNPIASPEFEP-GPPREEAIEMARVVDRGIRE 114

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP--------- 454
                   +     +  +   I   +   DG+   A+   +  ALM   VP         
Sbjct: 115 SGAIDIKKLCISVGESVWIAYIDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGAD 174

Query: 455 ----ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
               + +   G+ +  +       ++ D S DE  +      V  +  G  A    M   
Sbjct: 175 VPLAMKEMPVGVTLAKIGSK----LMVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMGTV 230

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKV 538
             +E  ++ A+  A      I     + 
Sbjct: 231 PFTEAEVLEAIDMACEKAAEIRKLYLEA 258



 Score = 45.3 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 45/233 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSL--KDGQDFFPLTVNYQERTYAVG 71
           R +KLET  I + ++G+   T G+T VL  V         D QD   +  N +    A  
Sbjct: 32  RDIKLETNVIPK-AEGSAKVTLGDTQVLVGVKLQPGTPFPDSQDEGVIITNLELNPIASP 90

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKN--------------ETQVIINV 117
           +   G       P E  I ++R++DR IR   +   K               +  V+   
Sbjct: 91  EFEPGP------PREEAIEMARVVDRGIRESGAIDIKKLCISVGESVWIAYIDVHVLN-- 142

Query: 118 MQHDLESSPHVVSMVAASAALML------SGLPFEGPVV------GAQVDYINGQYVLNP 165
              D  +     S+ A +A +         G+  + P+       G  +  I  + +++P
Sbjct: 143 ---DDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMKEMPVGVTLAKIGSKLMVDP 199

Query: 166 RLDE---DQGSLDLFVSGTQDAVLMVELEANQL-SEDVVLDAIIFGHNECKPV 214
            LDE    +  L   VS +  +V  ++       +E  VL+AI     +   +
Sbjct: 200 SLDEGAVCETKLT-VVSSSDGSVAGMQKMGTVPFTEAEVLEAIDMACEKAAEI 251


>gi|75761778|ref|ZP_00741714.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490728|gb|EAO54008.1| S1-type RNA-binding domain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 139

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692
           +       GLVHIS+++   V   +D +K GD V VK+++ +  GKI LS+K   +
Sbjct: 1   MELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKE 56


>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
          Length = 229

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
            +R ++ ++  L    GS++ ++G+T A V    G  E +               M Y+ 
Sbjct: 20  MLRPMNCELNQLSMPDGSAMLMQGNT-AAVAGIYGPIEAKLQ------------KMIYDK 66

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
                  +   G     +       +      +  T      + I  +  E  G     T
Sbjct: 67  ASIEVSYIPVKGPAKIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACT 126

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           +  + LAL++AG+P+   +A +   + +  ++ I+  D +  +D      +        I
Sbjct: 127 INAACLALINAGIPMKFTIAAVNCMIQEGTNNIILDPDSTQLQDAKAEFTYAFDSVKKDI 186

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                    G  +E   +  + + K+   ++ +    ++ +
Sbjct: 187 ICC---YTAGCFTEEEFLETIDKCKQASQYVFDFYRNLVKK 224



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 20/219 (9%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+  E  +++   DG+ +   G T  +A +             P+    Q+  Y    I
Sbjct: 22  RPMNCELNQLSM-PDGSAMLMQGNTAAVAGIYG-----------PIEAKLQKMIYDKASI 69

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
              Y+  +     ++ +    I  +        +   T + IN+ + +        ++ A
Sbjct: 70  EVSYIPVKGPAKIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINA 129

Query: 134 ASAALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDEDQ-GSLDLFVS---GTQDAVLM 187
           A  AL+ +G+P +  +         G    +L+P   + Q    +   +     +D +  
Sbjct: 130 ACLALINAGIPMKFTIAAVNCMIQEGTNNIILDPDSTQLQDAKAEFTYAFDSVKKDIICC 189

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
                   +E+  L+ I       + V +    L K  A
Sbjct: 190 YTAGC--FTEEEFLETIDKCKQASQYVFDFYRNLVKKYA 226


>gi|294781761|ref|ZP_06747094.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481871|gb|EFG29639.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           sp. 1_1_41FAA]
          Length = 827

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDRKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           FV      DG +     S E +    D   EGD V  ++++ + D  KIKLS+K
Sbjct: 749 FVELTKGIDGFIPTQFASKEFIKNIRDKFNEGDIVKARVVEVNKDTQKIKLSIK 802



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKE 666
           +   ++ +  +V     G V KV+ +GAFV      +GLVHIS  S  +     ++ VKE
Sbjct: 550 DPWATVANEFKVGDEVDGVVTKVLPYGAFVEIKAGVEGLVHISDFSWTKKKVNVAEYVKE 609

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+ V VK+ D   +  K+KL +K +  N  
Sbjct: 610 GEKVKVKITDLHPEDRKLKLGIKQLVANPW 639



 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +     V +V++FG  V     + G +HIS++S +R+ K SD  K GD +   ++  
Sbjct: 475 EVGQTVDCVVTEVLEFGLAVDINALK-GFIHISEVSWKRLDKLSDAYKVGDKIKAIVVSL 533

Query: 678 DDRGK-IKLSMKVVDQNTG 695
           D+  + +KLS+K ++ +  
Sbjct: 534 DEAKRNVKLSIKKLEADPW 552



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S      V+ + KG+VV+V  FG FV      D  VH S  +           + G+
Sbjct: 638 PWDSAEKDYAVDTVIKGKVVEVKPFGIFVELTDGIDAFVHSSDYNWIGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDRKIKGSLKALRKSPWE 724


>gi|302667984|ref|XP_003025570.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
 gi|291189685|gb|EFE44959.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
          Length = 1799

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D    K+  +                   +V +I  G+V KV ++GAF+   G  
Sbjct: 1276 RLTVVDKDNNKVQMTLKKSALDPNYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSA 1335

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV   + + ++ D V  K+L  D ++G+I L +K 
Sbjct: 1336 NLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQIALGLKA 1384



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+ + GA V F G+  G + +S++S   +   S     G  V V  L  D +  ++
Sbjct: 645 GTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERL 704

Query: 684 KLSMKV 689
            +S K 
Sbjct: 705 VVSCKD 710



 Score = 44.1 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +V +I +G V +V + G FV         + +S LS   + +  D  +    V  +L   
Sbjct: 1221 KVGQIVRGFVRRVDNIGVFVTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVV 1280

Query: 678  D-DRGKIKLSMK--VVDQN 693
            D D  K+++++K   +D N
Sbjct: 1281 DKDNNKVQMTLKKSALDPN 1299



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
           G  V    +  GLV    ++  ++       +EG  V V++L  D + + ++L++K
Sbjct: 565 GLIVSLTDSISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLK 620


>gi|294339657|emb|CAZ88017.1| Protein tex [Thiomonas sp. 3As]
          Length = 800

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 15/138 (10%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI-------- 622
           R  +++   +  +DD          LAE+E      R   R+   +  V+ I        
Sbjct: 620 RDTLQRLRPEQFVDDRFGAFTVRDVLAELEKPGRDPRPEFRTAKLLVGVHDIKQLEAGMQ 679

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G V  V  FGAFV     +DGLVH+SQ++   V    +VVK GD V V++++ D  R 
Sbjct: 680 LEGTVTNVTAFGAFVDLGVHQDGLVHVSQMAQRFVNDAREVVKTGDIVKVRVVEVDVARK 739

Query: 682 KIKLSMKVVDQ--NTGKP 697
           +I LSM+  D   +  +P
Sbjct: 740 RIALSMRPADPARDAARP 757


>gi|322828940|gb|EFZ32541.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
          Length = 259

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 75/251 (29%), Gaps = 13/251 (5%)

Query: 295 FEDIQAKVVRTVMLDKKVRMDGR-DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           F+ + +  V   +     R  GR   + VR     + +L + H S+    G+T+ I  V 
Sbjct: 15  FQHLFSWKVGLRITPVMKRNGGREAPDGVRYPHIALDVLGQCHSSACVELGNTRVICAV- 73

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRR--EIGHGRLARRAIHP 411
                 +Q VD   G+ R            A    +    PS    E             
Sbjct: 74  ---HHPQQLVDEYRGS-RGRVACTVRRSASAGSHAAGSAQPSVVTPEKDMSLALEGVAEE 129

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           V+         + +V EI   DG    A     S AL+  G  +    +     L+ DG 
Sbjct: 130 VVILEKIPQLLVEVVVEILAEDGGVWDAVATSMSAALVSGGFEMYDLFSACGSALLSDG- 188

Query: 472 DFIILSDISGDEDHLGHMD-FKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRL 529
              ++ D    E+             +SG I   +        +   +V +  +    R 
Sbjct: 189 --AVVLDPDAAEESNAQASALVCVMLNSGDICYARHQGSCEPGTVLELVSSAMKGCLSRK 246

Query: 530 HILNEMSKVLS 540
             +        
Sbjct: 247 SAITTQLINHP 257


>gi|257464104|ref|ZP_05628488.1| transcription accessory protein [Fusobacterium sp. D12]
 gi|317061623|ref|ZP_07926108.1| transcription accessory protein [Fusobacterium sp. D12]
 gi|313687299|gb|EFS24134.1| transcription accessory protein [Fusobacterium sp. D12]
          Length = 710

 Score = 67.6 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            +G V  V+ FGAFV      D L+HIS +S E V+  S V+  G  + V++ + D 
Sbjct: 654 LEGTVRNVVKFGAFVDIGLKNDALLHISAISDEFVSDPSKVLSVGQIIKVRIKEIDK 710


>gi|323705353|ref|ZP_08116928.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535255|gb|EGB25031.1| RNA binding S1 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 365

 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++  G V  +  FG FV   G  DGL+ + ++S  +    +DV+  GD V V +   D +
Sbjct: 190 QVINGVVKSITKFGVFVDL-GGIDGLIPLREISWSKNVNINDVLHIGDRVDVYVDKID-Q 247

Query: 681 GKIKLSMKVVDQNTGKPI 698
            KI LS+K +  +    I
Sbjct: 248 EKITLSLKKLFPDPWVNI 265



 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +I +  +V  I  G +  V  FGAFV      +GL H + L    +    +  K G
Sbjct: 260 DPWVNINEKFKVGDIILGIITNVTTFGAFVEISEGLEGLAHKNDL----IKNVKEY-KIG 314

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           D + V+++ FD   K KLS+K V++N+
Sbjct: 315 DEITVEIISFDSEKK-KLSLKEVEKNS 340



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M     +      I KG+++K+++ G         D  V  SQLS     + SD    GD
Sbjct: 5   MNEYTFNEIHSGDIVKGKIIKILNDGIIADIGYKSDAFVPKSQLSLNPNIRISDDFNVGD 64

Query: 669 TVWVKLLDFDDRG 681
            + + ++  +D  
Sbjct: 65  EIDLYIIKREDEN 77


>gi|198466492|ref|XP_001354017.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
 gi|198150625|gb|EAL29754.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
          Length = 328

 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           G++ + +  +  + G+L    GS+    G+T+ + +V       E    +          
Sbjct: 39  GKNPKKLSPL-LRAGVLTTVRGSAYMEYGNTKVMAIV---APPHEMMRATARRMNMGVIN 94

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
              NF   ATGE+  +     RE   G +  +A+ PV+ +T    + L I   I + DG 
Sbjct: 95  CFVNFAAFATGELESVPE---REKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGC 151

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
                +    +AL++ G+     V      + +D 
Sbjct: 152 LLSTAINCCGVALVECGISTYDLVTASTACIYRDN 186



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T V+A V       R+     +   +        +A G++       ES P
Sbjct: 59  GSAYMEYGNTKVMAIVAPPHEMMRATARRMNMGVINCFVNFAAFATGEL-------ESVP 111

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +  M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 112 -EREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 170

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               V  +          LNP   E++
Sbjct: 171 TYDLVTASTACIYRDNVFLNPTAKEEE 197


>gi|194751933|ref|XP_001958278.1| GF10840 [Drosophila ananassae]
 gi|190625560|gb|EDV41084.1| GF10840 [Drosophila ananassae]
          Length = 325

 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +K   D +     R    + G+L    GS+    G+T+ + +V       E    S    
Sbjct: 36  EKPSKDPKKFTP-RKTFIRAGVLTTVRGSAYMEYGNTKVLAIV---APPHELMRASARRM 91

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                  + NF   ATGE+  +     RE   G +  +A+ PV+ +T    + L I   I
Sbjct: 92  NMGVINCYVNFAAFATGELESVPE---RERHLGSMLTKALEPVVCRTEFLNFQLDIRVLI 148

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD 469
            + DG      +    +AL++ G+     +      + ++
Sbjct: 149 LDDDGCLLSTAINCCGVALVECGISTYDLITASTACIYRN 188



 Score = 41.8 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VLA V     L            +        +A G++       ES P
Sbjct: 62  GSAYMEYGNTKVLAIVAPPHELMRASARRMNMGVINCYVNFAAFATGEL-------ESVP 114

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +  M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 115 -ERERHLGSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 173

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               +  +          LNP    ++
Sbjct: 174 TYDLITASTACIYRNHVFLNPSSKVEE 200


>gi|239992091|ref|ZP_04712755.1| putative transcription accessory protein [Streptomyces roseosporus
           NRRL 11379]
          Length = 771

 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLD 676
           E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK GD      +  
Sbjct: 651 EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKVKVMDV 710

Query: 677 FDDRGKIKLSMKVVDQN 693
              R +I L++++ D+ 
Sbjct: 711 DVPRKRISLTLRLDDEP 727


>gi|302781194|ref|XP_002972371.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
 gi|300159838|gb|EFJ26457.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
          Length = 1634

 Score = 67.6 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S         I  G++  +  FG FV        GL H+S++S + +     + K G  V
Sbjct: 1176 SSWKTFCAGDIVSGRIRSIEAFGMFVALADSDGVGLCHVSEVSDDFIQDLPTLYKVGQRV 1235

Query: 671  WVKLLDFD-DRGKIKLSMKV 689
             VK+L  D +  +I L MK 
Sbjct: 1236 QVKILKVDAETKRISLGMKA 1255



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           +  KV+  +    K      A I   R M R  T   +   +  G + +V   GA V   
Sbjct: 247 SDVKVDKLEK-KFKDGQRVRARIIGFRLMDRMATLTLKPGALVHGVITRVEACGALVSLG 305

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           G + GL  +  +S     K S   + G  +  ++L +D ++ K+ L+ K
Sbjct: 306 GVK-GLCPVQHMSEYNRLKPSSKFEVGKKMKFRVLQYDHEKKKLSLTFK 353



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    K++ +    + +++  + +  +      +  G +  + + G F+ F     GLVH
Sbjct: 342 DHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIGCFMEFYNHVKGLVH 401

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            S+L              G  V  ++L+ D  + +++LS
Sbjct: 402 RSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLRLS 440



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E + S         +  G +  + D    V F     GLV I   S   +   S V  
Sbjct: 506 AAESLPSSIHQLSPMAVLPGYISVIHDKYCLVSFLDNVTGLVPIGNASDGYLEDLSQVFF 565

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKV 689
            G +V  ++L+ D +  K  LS+K 
Sbjct: 566 VGQSVRAQVLEVDSENEKFVLSLKQ 590


>gi|298491699|ref|YP_003721876.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
 gi|298233617|gb|ADI64753.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
          Length = 301

 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S   + EV ++ +G +  +  FG FV   G    L+HI Q+S + +     V + G  + 
Sbjct: 191 SNFSLLEVGQLVEGTITGIKPFGVFVDLEG-VSALLHIKQVSQKFIESLEKVFQIGQQIK 249

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
             ++D D  +G++ +S +V++   G+
Sbjct: 250 AVIIDLDQGKGRVAISTRVLENFAGE 275



 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            A+SS +  + A+ + +      +  ++  G+V ++   GA+V   G     +   ++S 
Sbjct: 10  TANSSFSMDDFAKALEKHDYQFQKG-QVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEVSL 68

Query: 655 ERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             V   SDV+   + +   ++ D D  G++ LS K ++
Sbjct: 69  RVVTNLSDVLPMNEELEFLIIRDQDAEGQVTLSRKQLE 106


>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
          Length = 256

 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 62/182 (34%), Gaps = 22/182 (12%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +   R DGR    +R++S    +     GS+ F  G T   V V  G R           
Sbjct: 8   NGAAREDGRAPNQLRELSCDFAVNSAADGSARFRLGQTCVEVSV-FGFRG---------- 56

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH---GRLARRAIHPVLPQTAQFPYTLRI 425
                  +       +  EVS  G   +R++         R  +   L    Q      +
Sbjct: 57  -----VPVRSELPDRSAIEVSFRGVGGQRKVTDAAAENFLRECVDCALQVHEQPRSQCAV 111

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
            + + + DG    A    + LAL+DAG+P++    G++      G     L D S  E  
Sbjct: 112 AAHVVQDDGGVLAALASATCLALLDAGLPMTNVFVGVSSAFDAKGG---FLLDPSATEAQ 168

Query: 486 LG 487
             
Sbjct: 169 AS 170



 Score = 41.8 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG+     G+T V  +V   R +   +   P     +     VG       +R+     
Sbjct: 34  ADGSARFRLGQTCVEVSVFGFRGV-PVRSELPDRSAIEVSFRGVG------GQRKVTDAA 86

Query: 87  NEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALML--SGLP 144
            E  +   +D +++    +  +++  V  +V+Q D      V++ +A++  L L  +GLP
Sbjct: 87  AENFLRECVDCALQ--VHEQPRSQCAVAAHVVQDDGG----VLAALASATCLALLDAGLP 140

Query: 145 FEGPVVGAQVDY-INGQYVLNPRLDEDQGSLD 175
                VG    +   G ++L+P   E Q S +
Sbjct: 141 MTNVFVGVSSAFDAKGGFLLDPSATEAQASAN 172


>gi|169839599|ref|ZP_02872787.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7
           single-cell isolate TM7a]
          Length = 70

 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 164 NPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
           NP  ++  +  + L V+GT+DAV MVE  A ++SE+V+L+AI+FGH   K +     K 
Sbjct: 2   NPTGEQLLESEIQLSVAGTKDAVTMVEAGAKEVSEEVMLEAIMFGHERIKEICAEQDKF 60


>gi|52843030|ref|YP_096829.1| transcription accessory protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630141|gb|AAU28882.1| transcription accessory protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 789

 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           A+G+  +     +LS ISG  D L     +        T       I  + E     A  
Sbjct: 492 AVGVDINTASAALLSHISGLNDTLAKNIVQFRDEHGAFTNRNQLKNIHRMGEKAFQQAA- 550

Query: 523 QAKRGRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
               G L I+N  + + +     +      ++         I+ +IG      R +++  
Sbjct: 551 ----GFLRIMNGDNALDASCVHPEAYPLVEKIISDK--KVSIKEIIGN-----RELLQSI 599

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVK 629
            A+  +D++  +      L E+E      R                  E   + +G V  
Sbjct: 600 NAEQYVDENFGLPTIRDVLRELEKPGRDPRPEFRTAQFQEGVEDIKDLEQGMVLEGVVSN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDDRGKIKLSMK 688
           V +FGAFV     +DGLVHIS ++   +     VVK GD      +    +R +I LSMK
Sbjct: 660 VTNFGAFVDIGVHQDGLVHISAMTNRFITDPRSVVKAGDIVKVKVVEVDKERRRIGLSMK 719

Query: 689 VVDQNT 694
           + D+  
Sbjct: 720 LNDEQA 725


>gi|242817707|ref|XP_002487008.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713473|gb|EED12897.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1810

 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--G 641
            ++   D    ++  S    +  +           +  +I  G+V KV DFGAF+      
Sbjct: 1277 RIIFVDQENKRLQMSLKESVLDSNYKTPITIRDLKPGQIVTGKVRKVEDFGAFIVIDRSA 1336

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKV 689
               GL H SQ++ + +     + + GD V  K+L  D +  KI   +K 
Sbjct: 1337 NVSGLCHRSQMAEQNIDDARKLFEAGDIVKAKILKIDPKQEKISFGLKA 1385



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 550  TPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--- 606
               +  MA    +I   I    +++R         +++D        S   +++ ++   
Sbjct: 1156 AVTITDMADDYSKIDTSIYKKNEILRA------CIIDVDKSNKKIFLSLRPSKVLSSTLP 1209

Query: 607  -REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             R+   +  D  +VN I +G V KV D G FV    +    V IS LS   + +  D  +
Sbjct: 1210 VRDREITSIDQLKVNDIVRGFVRKVADNGLFVTLGHSVSAYVRISDLSDSYLKEWKDEFQ 1269

Query: 666  EGDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
                V  +++  D +  ++++S+K  V+D N   PI
Sbjct: 1270 ADQLVKGRIIFVDQENKRLQMSLKESVLDSNYKTPI 1305



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G ++ +   GA V F G   G + +S++S   +   S   ++G  V V  +  D
Sbjct: 647 GTLINIQPNGATVQFYGTVRGFLPVSEMSEAYIKDPSQHFRKGQVVNVHAISVD 700


>gi|327267495|ref|XP_003218536.1| PREDICTED: protein RRP5 homolog [Anolis carolinensis]
          Length = 1816

 Score = 67.2 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A  E         E   +  G V  +M +G FV F     G+   S +S + V  T D  
Sbjct: 716 AQEEHAVKNFSDLEPGLLLTGFVKNIMPYGVFVEFPYGLTGMAPKSAMSDKFVTDTKDHF 775

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             G TV  K+ + D ++ +I LS+K+ D
Sbjct: 776 VIGQTVIAKVTNIDEEKQRILLSLKLSD 803



 Score = 44.9 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G VV   +FG  V F     GLV  ++L    +    +V  EG  V V +L  + ++
Sbjct: 545 ITHGFVVCAREFGCIVKFYNDIKGLVPKNELGLPPLTPPQEVFYEGQVVKVMVLKCEPEQ 604

Query: 681 GKIKLS 686
           GK+ LS
Sbjct: 605 GKVLLS 610



 Score = 44.5 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
           ++ +G ++ +  FG  V       GLV    L+   + +      EG +V  ++L    +
Sbjct: 455 QVLEGTILTLKPFGMHVKLTEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRVLVSIPE 514

Query: 680 RGKIKLSMKVVDQNTGKPIV 699
             KI L++K    N+  PI+
Sbjct: 515 ARKIVLTLKKTLVNSKLPIL 534



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 612  SITDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S     E   I  G +  V+   G  V     R G V +  LS     +  +    G  V
Sbjct: 1217 SGVYSLEKGTITLGCIKSVIPHVGLQVTLPFGRTGKVSLFHLSDSYTEQPLEDFSVGKIV 1276

Query: 671  WVKLLDFDDRGKIKLSMKV 689
               +L  D+   IKLS++ 
Sbjct: 1277 RCYVLS-DEDKTIKLSLRQ 1294



 Score = 41.8 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 423  LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
            L +V    E+DGS+     C   L ++ A       + G  + + +  +  ++  D    
Sbjct: 852  LELVVHKVETDGSAVFRGTCADGLTVVAAH----SHLGGKNVAVGEKAEAVVLYIDYLKA 907

Query: 483  EDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            + ++   +  ++     +T               +    +   +      +  S + +  
Sbjct: 908  KIYVSLREELLSSKPKKLT---------------LDSQYEAIVQHVATEYSVASLIGTGQ 952

Query: 543  RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE--QTGAKVNIDDDGTVKIASSSL 600
             + +   +   +      ++++  +G    V+  +VE    G  + +   G    A  S 
Sbjct: 953  LIAIPVTSHFNDTFRFDSEKLK--MGQSVMVVLKMVERGDYGLLLAVQAPGKRMTAIRSR 1010

Query: 601  AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAK- 659
             + EA  E + ++     V  + KG V  V      V       G +H SQ+  +     
Sbjct: 1011 RDSEALEETLPTVKHSLCVGDVVKGTVKSVKPTHVLVAIDDHLMGSIHASQIVDDVFEGT 1070

Query: 660  -TSDVVKEGDTVWVKLLD 676
              + ++K G  V  +++ 
Sbjct: 1071 FPTSLLKVGQKVTARVIG 1088


>gi|307244332|ref|ZP_07526446.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492298|gb|EFM64337.1| S1 RNA binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 412

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 75/195 (38%), Gaps = 22/195 (11%)

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI----------- 574
             R  I  E     +  + +       +        ++ N++  G  +            
Sbjct: 190 ERRAKIKAEREAERARIKAEREALFASLVEGEKRKGKVTNIMPYGAFIDLGGVEGLAHIN 249

Query: 575 ---RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA-------REMIRSITDVPEVNKIYK 624
                 VE   + +N+ D+  V + S        A       ++  + I D   V  + +
Sbjct: 250 NLSWTRVESVESVLNVGDEVEVFVQSVDPETKRIALALKDPDKDPWKLIADEVSVGSVVE 309

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
             V+++++ GAF+      +  + I +LS  RV +  DVV  GDTV   ++ F+ D  ++
Sbjct: 310 ATVLRIIEKGAFLQVKEGVEAYLPIGELSEGRVNRVEDVVNVGDTVKAAIIKFNADNKRM 369

Query: 684 KLSMKVVDQNTGKPI 698
            LS++ + +   + +
Sbjct: 370 MLSIRELTREPEEDL 384


>gi|77407499|ref|ZP_00784339.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
 gi|77173893|gb|EAO76922.1| S1 RNA-binding domain protein [Streptococcus agalactiae H36B]
          Length = 102

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
           FV     R GL+HIS++ T  +    DV+  GD V+V+++D D+   K  LS++ +++ 
Sbjct: 4   FVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQKASLSLRTLEEE 62


>gi|312137244|ref|YP_004004581.1| translation initiation factor 2 subunit alpha (aeif-2a)
           [Methanothermus fervidus DSM 2088]
 gi|311224963|gb|ADP77819.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanothermus fervidus DSM 2088]
          Length = 257

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++    V KV D+GAFV       ++G +HIS++S+  V    D VKE   +  ++
Sbjct: 7   PEEGELVVATVKKVRDYGAFVRLEEYKGKEGFIHISEVSSGWVKNIRDFVKENQKIVARV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           +  +  +G++ LS+K + ++  +
Sbjct: 67  VRVNPVKGQVDLSLKGIREDQKR 89


>gi|213027002|ref|ZP_03341449.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 277

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A +   +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+ 
Sbjct: 186 AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLS 245

Query: 666 EGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
            GD V  K    D + + I LS++  D+   K
Sbjct: 246 VGDDVEAKFTGVDRKNRAISLSVRAKDEADEK 277



 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ID++           +        +   +        +G++  + DFG F+   G  D
Sbjct: 82  LDIDEERRRISLGLKQCKSN----PWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGID 137

Query: 645 GLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           GLVH+S +S   VA    V   K+GD +   +L  D +R +I L +K + ++ 
Sbjct: 138 GLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 189



 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKE 666
           +   +I           G+V  + D+G FV      +GLVH+S++    +    S VV  
Sbjct: 14  DPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 73

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           GD V V +LD D +R +I L +K    N  +
Sbjct: 74  GDVVEVMVLDIDEERRRISLGLKQCKSNPWQ 104


>gi|148361144|ref|YP_001252351.1| transcription accessory protein [Legionella pneumophila str. Corby]
 gi|296108478|ref|YP_003620179.1| Transcriptional accessory protein [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282917|gb|ABQ57005.1| transcription accessory protein [Legionella pneumophila str. Corby]
 gi|295650380|gb|ADG26227.1| Transcriptional accessory protein [Legionella pneumophila 2300/99
           Alcoy]
          Length = 789

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           A+G+  +     +LS ISG  D L     +        T       I  + E     A  
Sbjct: 492 AVGVDINTASAALLSHISGLNDTLAKNIVQFRDEHGAFTNRNQLKSIHRMGEKAFQQAA- 550

Query: 523 QAKRGRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQT 581
               G L I+N  + + +     +      ++         I+ +IG      R +++  
Sbjct: 551 ----GFLRIMNGDNALDASCVHPEAYPLVEKIISDK--KVSIKEIIGN-----RELLQSI 599

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVK 629
            A+  +D++  +      L E+E      R                  E   + +G V  
Sbjct: 600 NAEQYVDENFGLPTIRDVLRELEKPGRDPRPEFRTAQFKEGVEDIKDLEQGMVLEGVVSN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDDRGKIKLSMK 688
           V +FGAFV     +DGLVHIS ++   +     VVK GD      +    +R +I LSMK
Sbjct: 660 VTNFGAFVDIGVHQDGLVHISAMTNRFITDPRSVVKAGDIVKVKVVEVDKERRRIGLSMK 719

Query: 689 VVDQNT 694
           + D+  
Sbjct: 720 LNDEQA 725


>gi|307353911|ref|YP_003894962.1| translation initiation factor 2 subunit alpha [Methanoplanus
           petrolearius DSM 11571]
 gi|307157144|gb|ADN36524.1| translation initiation factor 2, alpha subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 262

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++    V  V DF AFV        +GL+ I++++   +    D V+EG  V  K+
Sbjct: 7   PEEGELVVCTVTSVKDFVAFVTLDEYNNNEGLIPIAEVARGWIKHIRDFVREGQKVVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L  +  RG I LS+K V+ +  K 
Sbjct: 67  LHVNKSRGHIDLSLKDVNDHQRKE 90


>gi|300857290|ref|YP_003782274.1| putative RNA-binding S1 domain-containing protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300437405|gb|ADK17172.1| predicted RNA binding S1 domain protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 136

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I +G VV +  FGAFV   G + GLVHIS++S   V    D +KE D V VK+
Sbjct: 1   MTLKAGSILEGTVVNITSFGAFVDVEG-KTGLVHISEVSDTYVKNIRDYLKEKDKVKVKV 59

Query: 675 LDFDDRGKIKLSMKV--VDQNTGKPI 698
           +  DD GKI LS+K   +D+ + +P+
Sbjct: 60  ISIDDNGKISLSIKQAGLDKKSVRPM 85


>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
           7]
 gi|29336897|sp|Q975G9|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
 gi|15621437|dbj|BAB65432.1| 275aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 275

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 100/269 (37%), Gaps = 31/269 (11%)

Query: 297 DIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
            +  K      L++ +R+DGR +   R IS  +   ++  GS+L   GDT  +  V L  
Sbjct: 12  SLLKKESILNALERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKL-- 69

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------ 410
            E+E + D+     + + +++   LP A  E    G P    I   R+  R++       
Sbjct: 70  EEEEPFPDT---PNQGNLVVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLRDSKAVD 125

Query: 411 --PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP-----------ISK 457
              ++    +  +T  +   + +  G+   A    +  AL +  +P           I +
Sbjct: 126 LSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKE 185

Query: 458 ------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGG 511
                 P+A   + +        ++ D S DE+ +  +    +    G          G 
Sbjct: 186 EKTDVTPIAYPVVTVTVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKSNFGS 245

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLS 540
           +S   + +A   A+     +  E+ K ++
Sbjct: 246 LSLQEVDVAESLARSASQKLFEELKKQIN 274



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 39/240 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP+ +     A++++G+ L   G+T+VLA V  +         FP T N       V  +
Sbjct: 38  RPISVTLN-YAKKAEGSALVKLGDTMVLAGVKLEEEEP-----FPDTPNQGNLVVNVELL 91

Query: 74  PGGYLRRESR-PTENEILISRMIDRSIRPLFSKCYKNETQV------IINVMQHDLESSP 126
           P  Y   E   P EN I ++R++DRS+R   +        +         V  + L+   
Sbjct: 92  PLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTAWVDVYVLDYGG 151

Query: 127 HVV--SMVAASAALMLSGL---------------------PFEGPVVGAQVDYINGQYVL 163
           +V+    +AA AAL  + L                     P   PVV   V  I    V+
Sbjct: 152 NVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTVTVAKIGKYLVV 211

Query: 164 NPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK 220
           +P LDE+    + +  S  QD  ++   ++N   LS   V  A     +  + + E + K
Sbjct: 212 DPSLDEESIADVKISFSYVQDGRIVGMQKSNFGSLSLQEVDVAESLARSASQKLFEELKK 271


>gi|309800173|ref|ZP_07694359.1| toxin expression - transcriptional accessory protein [Streptococcus
           infantis SK1302]
 gi|308116220|gb|EFO53710.1| toxin expression - transcriptional accessory protein [Streptococcus
           infantis SK1302]
          Length = 686

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           +G+  +     +LS ++G    +     K    +  IT+     K+  +       A   
Sbjct: 466 VGVNINTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGF 525

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI-VEQTG 582
            +      + + + V  E+   + E   R+         I+ +       ++ I V +  
Sbjct: 526 LRIPESSNILDNTGVHPENYAAVKELFKRL--------DIKELNEEAQAKLKSISVNEMA 577

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVKVMDFG 634
            ++++  +    I +  L      R+   +     +V  I         +G V  V+DFG
Sbjct: 578 QELDLGQETLKDIIADLLKSGRDFRDSFDAPVLRQDVLDIKDLQVGQKLEGVVRNVVDFG 637

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           AFV      DGL+HIS +S + +   S VV  GD V V +
Sbjct: 638 AFVDIGIHEDGLIHISHMSKKFIKHPSQVVSVGDLVTVWV 677


>gi|308802860|ref|XP_003078743.1| ribonuclease PH (ISS) [Ostreococcus tauri]
 gi|116057196|emb|CAL51623.1| ribonuclease PH (ISS) [Ostreococcus tauri]
          Length = 693

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 304 RTVMLDKKVRMDGRDSET-VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           R V++    R DGR S+  +R +S  +    R  GSS    G+T+    V  G R     
Sbjct: 453 RAVVMQT-PRSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAV-YGPRRP--R 508

Query: 363 VDSLSGTQRNDFMMHYNFLPCATGEVSR-----MGAPSRRE---------IGHGRLARRA 408
           VD L+        +    +P A     R      G  + RE         +         
Sbjct: 509 VDDLT-VNTGVIDVDVFRVPFA---RKRAIHVERGRENEREKDLNRSAADVELSARIADV 564

Query: 409 IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
           +             + +   I +SDG   +A+V  +S AL  AGV ++   +   +  + 
Sbjct: 565 LRACALTETFPRAQVDVYVTIMDSDGGEVVASVLAASAALARAGVEMADLASACELVRIG 624

Query: 469 DGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGR 528
           +     ++ D + +E   G+    +A   S    +Q +   G  + +    AL+Q   G 
Sbjct: 625 E----RLVLDPTEEECERGNGKVFLAQMSSEEGMVQGET-FGRWTADESRRALEQCAAGC 679

Query: 529 LH 530
             
Sbjct: 680 NR 681



 Score = 43.7 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 13/156 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDG--------QDFFPLTVNY-QERTYAVGKIPGGY 77
           + G+     G T V   V   R  +           D     V + ++R   V +     
Sbjct: 484 ASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVIDVDVFRVPFARKRAIHVERGRENE 543

Query: 78  LRRESRPTENEILISRMIDRSIR--PLFSKCYKNETQVIINVMQHDLESSPHVVSMVAAS 135
             ++   +  ++ +S  I   +R   L     + +  V + +M  D +    V S++AAS
Sbjct: 544 REKDLNRSAADVELSARIADVLRACALTETFPRAQVDVYVTIM--DSDGGEVVASVLAAS 601

Query: 136 AALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           AAL  +G+         ++  I  + VL+P  +E +
Sbjct: 602 AALARAGVEMADLASACELVRIGERLVLDPTEEECE 637


>gi|86140955|ref|ZP_01059514.1| putative RNA binding protein with S1 RNA-binding domain
           [Leeuwenhoekiella blandensis MED217]
 gi|85832897|gb|EAQ51346.1| putative RNA binding protein with S1 RNA-binding domain
           [Leeuwenhoekiella blandensis MED217]
          Length = 711

 Score = 67.2 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D+                        +  E +++  G V  + +FGAFV       G
Sbjct: 604 DILDELEKPSLDPREPSKAFTFNQNIHKIEDLEPDQLLPGIVNNITNFGAFVDIGIKESG 663

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           L+HIS L+   V+  +  V   + V VK+L+ D  R +I+L
Sbjct: 664 LIHISNLADGYVSDVNAHVSLQEQVVVKVLEVDIKRKRIQL 704


>gi|188997064|ref|YP_001931315.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932131|gb|ACD66761.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 565

 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E         +V  + KG+V K+++ GA V      +G + +S+++ ER+   SD ++  
Sbjct: 424 EDWNEFISKYKVGDVVKGKVKKLIEKGAIVDLGENIEGFIPVSEIALERINIPSDKLELH 483

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVV 690
             V  K++  D +  KI LS+K +
Sbjct: 484 QEVEAKIIKIDPENKKITLSIKQI 507



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A E         +V  + +  V ++  FG  V      DG +H  ++S     K    +
Sbjct: 252 KALEPNPWDKFDKDVEDVVEATVKEINKFGVIVDV-DGVDGFIHNREISHFDYMKAKKNL 310

Query: 665 KEGDTVWVKLLDFDDRGK-IKLSMKVVDQNT 694
           K G+ V  K+++ D   + +KLS+K + +N 
Sbjct: 311 KVGNKVKAKIIELDKENRKLKLSIKALQENP 341



 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 79/215 (36%), Gaps = 10/215 (4%)

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
             E       F       G   +     +       +  A +  ++ ++ ++++  K   
Sbjct: 55  YKEGDEIEAVFIGKRDKDGYFILSRKGFVMKDKVKKLKEAFENKQKVKVMVVSKGEKGYI 114

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
                +  F P  E      + +       G +++    +    V I     +K      
Sbjct: 115 VDIEGIKGFMPFSESGTKRDETLPEGYTFEGYIVKFEERKGSPNVVISRKEALK------ 168

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            E+ A +E   S   V +  +   G+V K+ D  A +       G++  S+LS ++  K 
Sbjct: 169 EEVNAEKEKYLS---VLQQGQKVIGKVEKITDKVAVISIDNVVYGILPKSELSWDKNKKF 225

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            DV+K GD++ + + +  D+  I  S+K ++ N  
Sbjct: 226 EDVLKVGDSIELVIKEIKDKKPI-FSLKALEPNPW 259


>gi|154274011|ref|XP_001537857.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415465|gb|EDN10818.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 566

 Score = 67.2 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGL 646
           D  + K+  S    +              +  +   G+V  V +FGAF+   G     GL
Sbjct: 85  DAESNKLQMSLKESVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 144

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV------VDQNTGKPI 698
            H ++++  +V     + ++GD V  K++  D ++ +I L +K        D++ G+ +
Sbjct: 145 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENV 203



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++   S     +VN I +G V +V D G FV         V IS LS   + +  +  + 
Sbjct: 14  QDPEISSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQV 73

Query: 667 GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
              V  +++  D +  K+++S+K  V+D N   PI
Sbjct: 74  NQLVRGRVILADAESNKLQMSLKESVLDPNYKTPI 108


>gi|320547221|ref|ZP_08041514.1| YhgF like protein [Streptococcus equinus ATCC 9812]
 gi|320448109|gb|EFW88859.1| YhgF like protein [Streptococcus equinus ATCC 9812]
          Length = 710

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 9/124 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVK 629
           +++   K+NI  +    I +  L      R+   +     +V  I         +G V  
Sbjct: 585 IKEMAEKINIGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLDISDLEIGQKLEGTVRN 644

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+DFGAFV      DGL+HISQ+S   V   S VV  GD V V +   D +RGKI LS+ 
Sbjct: 645 VVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSVGDVVTVWVSKIDKERGKINLSLV 704

Query: 689 VVDQ 692
            + +
Sbjct: 705 DLRE 708


>gi|195143763|ref|XP_002012867.1| GL23700 [Drosophila persimilis]
 gi|194101810|gb|EDW23853.1| GL23700 [Drosophila persimilis]
          Length = 234

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           + +    + +R++  +   L R  GS ++ +G T  I  V LG  E +    S+ G+   
Sbjct: 6   KPEQVAKDKLREMQCKFNPLSRCDGSVMYCQGATVVISAV-LGPIEVKTQNLSIDGSY-- 62

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +  N+ P A       G P  +E       R  +   L   A     + +  +  E 
Sbjct: 63  ---LECNYRPKA-------GLPQVKERIREAAVRDVLELALLSEAYPRSKMSLQIQELED 112

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
            GS     +  + LA++  G+P+    A +   ++ +  ++  + D    E       F 
Sbjct: 113 RGSIDACALNSACLAMLIGGLPLKCSFAAVHC-IINEQGEY--ILDPDQRETEHERASFT 169

Query: 493 VAG 495
            A 
Sbjct: 170 FAF 172



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 21/174 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+V+   G TVV++ V+    +K      D   L  NY+ +      +P    R     
Sbjct: 29  DGSVMYCQGATVVISAVLGPIEVKTQNLSIDGSYLECNYRPKAG----LPQVKERIREAA 84

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
             + + ++ + +   R   S       Q+     + +   S    ++ +A  A+++ GLP
Sbjct: 85  VRDVLELALLSEAYPRSKMS------LQI----QELEDRGSIDACALNSACLAMLIGGLP 134

Query: 145 FEGPVVGAQ-VDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQ 194
            +        +    G+Y+L+P   E +    S        +  +L+V+ + + 
Sbjct: 135 LKCSFAAVHCIINEQGEYILDPDQRETEHERASFTFAFDSLEGNLLLVQTKGSF 188


>gi|54295658|ref|YP_128073.1| hypothetical protein lpl2746 [Legionella pneumophila str. Lens]
 gi|53755490|emb|CAH16989.1| hypothetical protein lpl2746 [Legionella pneumophila str. Lens]
          Length = 789

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 85/241 (35%), Gaps = 16/241 (6%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
           A+G+  +     +LS ISG  D L     +        T       I  + E     A  
Sbjct: 492 AVGVDINTASAALLSHISGLNDTLAKNIVQFRDEHGAFTNRNQLKNINRMGEKAFQQAA- 550

Query: 523 QAKRGRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPPDQIRNVIG----MGGKVIRGI 577
               G L I+N  + + +     +      ++         I+ +IG    +        
Sbjct: 551 ----GFLRIMNGDNALDASCVHPEAYPLVEKIISDK--KVSIKEIIGNRELLQSINAEQY 604

Query: 578 VEQTGAKVNIDD---DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           V+++     I D   +              A  +         E   + +G V  V +FG
Sbjct: 605 VDESFGLPTIRDVLRELEKPGRDPRPEFRTAQFKEGVEDIKDLEQGMVLEGVVSNVTNFG 664

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDDRGKIKLSMKVVDQN 693
           AFV     +DGLVHIS ++   +     VVK GD      +    +R +I LSMK+ D+ 
Sbjct: 665 AFVDIGVHQDGLVHISAMTNRFITDPRSVVKAGDIVKVKVVEVDKERRRIGLSMKLNDEQ 724

Query: 694 T 694
            
Sbjct: 725 A 725


>gi|308274397|emb|CBX30996.1| Uncharacterized protein HI0568 [uncultured Desulfobacterium sp.]
          Length = 767

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 547 GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKV--NIDDDGTVKIASSSLAEIE 604
            + +  VE +   P +  N+      + + + E+ G     +I ++             E
Sbjct: 579 EDLSCSVEDLINDPVKRSNI-----DIKKYVTEEVGIPTLNDILEELAKPGRDPRKELEE 633

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            A +      +         G V  V  FGAFV     +DGLVH+S+LS   V   +DVV
Sbjct: 634 FAFQSGIEKMEDLRAGMKLPGIVTNVTAFGAFVDVGVHQDGLVHVSELSDRYVKNPADVV 693

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           K    V V +LD D DR +I LSMK V
Sbjct: 694 KVQQKVTVTVLDVDIDRKRISLSMKKV 720


>gi|307611706|emb|CBX01401.1| hypothetical protein LPW_30941 [Legionella pneumophila 130b]
          Length = 789

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-V 670
                 E   + +G V  V +FGAFV     +DGLVHIS ++   +     VVK GD   
Sbjct: 642 EDIKDLEQGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAMTNRFITDPRSVVKAGDIVK 701

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNT 694
              +    +R +I LSMK+ D+  
Sbjct: 702 VKVVEVDKERRRIGLSMKLNDEQA 725


>gi|296135528|ref|YP_003642770.1| Tex-like protein protein-like protein [Thiomonas intermedia K12]
 gi|295795650|gb|ADG30440.1| Tex-like protein protein-like protein [Thiomonas intermedia K12]
          Length = 800

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E     +G V  V  FGAFV     +DGLVH+SQ++   V    +VVK GD V V++++ 
Sbjct: 675 EAGMQLEGTVTNVTAFGAFVDLGVHQDGLVHVSQMAQRFVNDAREVVKTGDIVKVRVVEV 734

Query: 678 DD-RGKIKLSMKVVDQ 692
           D  R +I LSM+  D 
Sbjct: 735 DVARKRIALSMRPADP 750


>gi|54298824|ref|YP_125193.1| hypothetical protein lpp2891 [Legionella pneumophila str. Paris]
 gi|53752609|emb|CAH14044.1| hypothetical protein lpp2891 [Legionella pneumophila str. Paris]
          Length = 789

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-V 670
                 E   + +G V  V +FGAFV     +DGLVHIS ++   +     VVK GD   
Sbjct: 642 EDIKDLEQGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAMTNRFITDPRSVVKAGDIVK 701

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNT 694
              +    +R +I LSMK+ D+  
Sbjct: 702 VKVVEVDKERRRIGLSMKLNDEQA 725


>gi|306833951|ref|ZP_07467075.1| YhgF like protein [Streptococcus bovis ATCC 700338]
 gi|304423952|gb|EFM27094.1| YhgF like protein [Streptococcus bovis ATCC 700338]
          Length = 708

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVK 629
           +E     +NI  +    I +  L      R+   +     +V  I         +G V  
Sbjct: 583 IETMAETINIGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLDISDLEIGQKLEGTVRN 642

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+DFGAFV      DGL+HISQ+S   V   S VV  GD V V +   D +RGKI LS+ 
Sbjct: 643 VVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSVGDVVTVWVSKIDKERGKINLSLV 702

Query: 689 VVDQ 692
            + +
Sbjct: 703 DLRE 706


>gi|268319009|ref|YP_003292665.1| RNA binding protein [Lactobacillus johnsonii FI9785]
 gi|262397384|emb|CAX66398.1| RNA binding protein [Lactobacillus johnsonii FI9785]
          Length = 123

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  I  G++  +  +G FV      +GL+HIS++    V       + G+T+ V++
Sbjct: 1   MQVKIGDIVHGKISGIQQYGIFVRLDSQIEGLIHISEIHGGYVKDIGREYQVGETIKVQV 60

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           +D D    +I LS + V     +
Sbjct: 61  IDIDPYSNQISLSRRAVLPEAEE 83


>gi|241956141|ref|XP_002420791.1| RNA-dependent ATPase/ATP-dependent RNA helicase, putative;
           pre-mRNA-splicing factor ATP-dependent RNA helicase,
           putative [Candida dubliniensis CD36]
 gi|223644133|emb|CAX41876.1| RNA-dependent ATPase/ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
          Length = 1002

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 10/146 (6%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVN-----IDDDGTVKIASSSLAEIEAAREMIRSIT 614
           P+   NV+ +   +I    + T   ++     + D+G  +     + ++           
Sbjct: 19  PENDENVVLIAKFLINLYEKSTSPTLDEFKKVVKDNGGDEFEDEFIKDVYNQISRTSKPP 78

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWV 672
               V +IY G V  + ++GAF+       GL HISQ+S +  R+   +++++    V+ 
Sbjct: 79  QPIRVGEIYSGTVEGLTNYGAFIKI-ENTSGLCHISQMSFDGSRIES-TNILQPKQKVFA 136

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGKP 697
           K++D   +  KI LSM+ ++Q TG+ 
Sbjct: 137 KVIDIQANHTKISLSMRGINQTTGQE 162


>gi|78776336|ref|YP_392651.1| competence protein ComEA helix-hairpin-helix region [Sulfurimonas
           denitrificans DSM 1251]
 gi|78496876|gb|ABB43416.1| Competence protein ComEA helix-hairpin-helix region [Sulfurimonas
           denitrificans DSM 1251]
          Length = 657

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 77/186 (41%), Gaps = 13/186 (6%)

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI 563
           +  + + G+ +     A+   +      + + S +  ES  ++ +    +++  I     
Sbjct: 482 EQLLSVKGLGKKAYEQAVGFIRIKNSKNIFDNSGIHPESY-EVAKKLTGLDLTNIDVQAK 540

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY 623
              + +G + +R I+++   K   D    +                  +   +  V    
Sbjct: 541 AKELCVGEETLRDIIKEL-CKPGYDPREELPPIPFKDG---------ITDIKMLHVGSFV 590

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-DRG 681
            G V  + DFGAFV      DG++HIS+++  +V+   +V+     +  ++++  D ++G
Sbjct: 591 SGVVRNITDFGAFVDIGLKNDGMIHISKMAPTKVSHPLEVLSLNQYLPQIEVISIDEEKG 650

Query: 682 KIKLSM 687
           K+ LS+
Sbjct: 651 KVGLSL 656


>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
 gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
          Length = 277

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 98/270 (36%), Gaps = 39/270 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  K     + +K +R DGR     R +S  +   ++  GS+L   G T  +    L   
Sbjct: 15  IIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKL--E 72

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
            D+ Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 73  IDKPYEDT---PNQGNLIVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLRDSKALDL 128

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    S  AL +  V                
Sbjct: 129 TKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNE 188

Query: 454 -----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                P++ PV  I++  V   D ++++ D   DE+ +       + T            
Sbjct: 189 VVGKLPLNYPVVTISVAKV---DKYLVV-DPDLDEESIMDAKISFSYTPDLKIVGIQKSG 244

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKV 538
            G +S   +  A   A+   + +L E+ K 
Sbjct: 245 KGSMSLQDIDQAENTARSTAVKLLEELKKH 274



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 96/242 (39%), Gaps = 43/242 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL + T   A+++DG+ L   G T+VLA      D+  +D  +   L VN +    A  
Sbjct: 40  RPLSI-TLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYE 98

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQHD 121
               G       P EN I ++R++DRS+R       +K             + + V+ + 
Sbjct: 99  TFEPGP------PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYG 152

Query: 122 LES-SPHVVSMVAA------------SAALMLS------GLPFEGPVVGAQVDYINGQYV 162
                   ++ VAA            S  + ++       LP   PVV   V  ++   V
Sbjct: 153 GNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLV 212

Query: 163 LNPRLDEDQGSLD--LFVSGTQD-AVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++P LDE +  +D  +  S T D  ++ ++      +S   +  A     +    ++E +
Sbjct: 213 VDPDLDE-ESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEEL 271

Query: 219 SK 220
            K
Sbjct: 272 KK 273


>gi|302348935|ref|YP_003816573.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
 gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
          Length = 280

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 93/242 (38%), Gaps = 39/242 (16%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  K VR D RD  T R++S QVG++ +  GS+    G+TQ +V V L     E  +   
Sbjct: 22  LYKKGVRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGVKL-----EVGIPYR 76

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQTAQ 418
                    ++    P A+      G P    +   R+  R++          ++ +  +
Sbjct: 77  DTPNEGVLQVNSELTPVASPTFEP-GPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGE 135

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---------------------ISK 457
             + L I   + + DG+   A++ G   ALM+  VP                     +++
Sbjct: 136 KAWVLWIDIYVLDYDGNYFDASMLGVMAALMNTKVPEYEETESGEIIINREKGTPLKLNR 195

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            VA +    V D     IL D + DE+ L      +A  + G         +GG + + +
Sbjct: 196 RVALVTSVKVGD----YILIDPNIDEELLADSRMVIAFDEQGTIVGMQKSGMGGYTRDEL 251

Query: 518 VM 519
           + 
Sbjct: 252 LK 253



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 53/248 (21%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VY---DRSLKDGQDFFPLTVNYQERT 67
           R L ++ G I + +DG+     G T VL  V   V      +  +G     L VN +   
Sbjct: 38  RNLSIQVGVIDK-ADGSAWVKLGNTQVLVGVKLEVGIPYRDTPNEGV----LQVNSELTP 92

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI-----INVM---- 118
            A      G       P EN + +SR+IDRS+R    K     + VI       V+    
Sbjct: 93  VASPTFEPGP------PDENAVELSRVIDRSLRD--PKAIDLSSLVIRPGEKAWVLWIDI 144

Query: 119 -QHDLESSPHVVSMVAASAALMLSGLP---------------------FEGPVVGAQVDY 156
              D + +    SM+   AALM + +P                         V       
Sbjct: 145 YVLDYDGNYFDASMLGVMAALMNTKVPEYEETESGEIIINREKGTPLKLNRRVALVTSVK 204

Query: 157 INGQYVLNPRLDED-QGSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKP 213
           +    +++P +DE+      + ++  +   +  M +      + D +L  I    N  + 
Sbjct: 205 VGDYILIDPNIDEELLADSRMVIAFDEQGTIVGMQKSGMGGYTRDELLKVIDISRNASQV 264

Query: 214 VIEAISKL 221
             + + + 
Sbjct: 265 YFKLLDQA 272


>gi|164661143|ref|XP_001731694.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
 gi|159105595|gb|EDP44480.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
          Length = 182

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 394 PSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV 453
             R+ +      R  + PV+         + IV  + + DG    A +   +LALMDAG+
Sbjct: 26  SDRQLVEWANAVRSTLEPVIHTHLYPRSQVDIVLYVEQQDGGVLPAMINACTLALMDAGI 85

Query: 454 PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH-MDFKVAGTDSGITAMQMDMKIGGI 512
           P+S  V  +  GL         + D++  E      +   +      +  +Q+D ++   
Sbjct: 86  PMSDYVTAMTCGL----HGSTAMLDLNLTEQSDLPFVTVAILPRTGTVPLIQLDTRMHMD 141

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
               MV     A R     L+   +  +E   +
Sbjct: 142 RFAAMVHVCVDAARVLRDELDSAVRGRTEQLAE 174



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 85  TENE-ILISRMIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
           ++ + +  +  +  ++ P+       +++  +++ V Q D    P +  + A + ALM +
Sbjct: 26  SDRQLVEWANAVRSTLEPVIHTHLYPRSQVDIVLYVEQQDGGVLPAM--INACTLALMDA 83

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
           G+P    V            +L+  L E Q  L      
Sbjct: 84  GIPMSDYVTAMTCGLHGSTAMLDLNLTE-QSDLPFVTVA 121


>gi|224372942|ref|YP_002607314.1| 30S ribosomal protein S1 [Nautilia profundicola AmH]
 gi|223589116|gb|ACM92852.1| 30S ribosomal protein S1 [Nautilia profundicola AmH]
          Length = 386

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLA--EIEAAREMIRSI 613
           + I  D I   +       + I       ++  D+  VK+         I+         
Sbjct: 98  IVIDVDGISGFVPKEEIFYKKI--DHRQYISEGDEVQVKLIDPVRRIFSIKKTLPNPWEE 155

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
                +  + K  V  + D+GAFV      +G +HIS+++ + +      +  GD + V+
Sbjct: 156 VKELNIGDVVKVSVSHITDYGAFVDLGNGVEGFLHISEINWDGIND----LTLGDEIEVE 211

Query: 674 LLDFD-DRGKIKLSMKVV 690
           +++ + +  K+++S K +
Sbjct: 212 IVEINPEEEKLRVSRKNL 229



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G+    +   +E    ++N +++   K+  S    +     +     +   V  I +G +
Sbjct: 198 GINDLTLGDEIEVEIVEINPEEE---KLRVSRKNLLTKPAVIFNENHN---VGDIVEGVI 251

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            K ++ GAFV        L+     S ++  K +++   GD +  K++    +  K+ +S
Sbjct: 252 TKFINVGAFVEI-DGISTLLPNKFASFKKGEKANEIFNIGDKLEFKIITISPEENKVIVS 310

Query: 687 MKVVDQNT 694
            K    N 
Sbjct: 311 RKDAMPNP 318


>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
           P2]
 gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
           98/2]
 gi|29337006|sp|Q9UXC0|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
 gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
 gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
 gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
 gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
 gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
 gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
 gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
 gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
 gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
 gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
 gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
 gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
 gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
          Length = 275

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 98/270 (36%), Gaps = 39/270 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  K     + +K +R DGR     R +S  +   ++  GS+L   G T  +    L   
Sbjct: 13  IIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKL--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
            D+ Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 71  IDKPYEDT---PNQGNLIVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLRDSKALDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    S  AL +  V                
Sbjct: 127 TKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNE 186

Query: 454 -----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                P++ PV  I++  V   D ++++ D   DE+ +       + T            
Sbjct: 187 VVGKLPLNYPVVTISVAKV---DKYLVV-DPDLDEESIMDAKISFSYTPDLKIVGIQKSG 242

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKV 538
            G +S   +  A   A+   + +L E+ K 
Sbjct: 243 KGSMSLQDIDQAENTARSTAVKLLEELKKH 272



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 96/242 (39%), Gaps = 43/242 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL + T   A+++DG+ L   G T+VLA      D+  +D  +   L VN +    A  
Sbjct: 38  RPLSI-TLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQHD 121
               G       P EN I ++R++DRS+R       +K             + + V+ + 
Sbjct: 97  TFEPGP------PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYG 150

Query: 122 LES-SPHVVSMVAA------------SAALMLS------GLPFEGPVVGAQVDYINGQYV 162
                   ++ VAA            S  + ++       LP   PVV   V  ++   V
Sbjct: 151 GNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLV 210

Query: 163 LNPRLDEDQGSLD--LFVSGTQD-AVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++P LDE +  +D  +  S T D  ++ ++      +S   +  A     +    ++E +
Sbjct: 211 VDPDLDE-ESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEEL 269

Query: 219 SK 220
            K
Sbjct: 270 KK 271


>gi|281491395|ref|YP_003353375.1| general stress protein/S1-type RNA-binding domain-containing
           protein [Lactococcus lactis subsp. lactis KF147]
 gi|281375129|gb|ADA64645.1| General stress protein with S1-type RNA-binding domain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 143

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC---------GARDGLVHISQLSTERVAKTSDVVKEG 667
           P++  I + +++ + D+GAFV F            + GL+HIS++ +  V    D+ K G
Sbjct: 6   PKIGDIVEVEIIGMQDYGAFVKFYLDNSSNKEKIEQKGLIHISEIQSGYVKSIHDIAKIG 65

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
             V  +++D D+   KI LS++ +++N 
Sbjct: 66  QKVMAQIIDIDEYNSKISLSIRSLEKNP 93


>gi|223995207|ref|XP_002287287.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976403|gb|EED94730.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 348

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKLLDFD-DR 680
             G VV V DFGAF++   A  GL+HISQ+   RVA  ++V K GDTV   ++++ D  +
Sbjct: 140 VSGTVVDVCDFGAFINIGYASRGLLHISQIQDTRVANINNVFKVGDTVEGARVINVDLAK 199

Query: 681 GKIKLSMK 688
           G++ LS++
Sbjct: 200 GEVGLSLR 207



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            ++   R   +  +V    +G+V  V+ +G FV    + + L+HIS+++   +      +
Sbjct: 207 RSKRPKRVDLNKFKVGDTLEGKVDSVVSYGVFVDVGASTNALLHISRITGSAIENIRHHL 266

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSM--KVVDQ 692
            EGD V V ++D D +R  + +SM  K  DQ
Sbjct: 267 NEGDPVSVHVIDIDVERKTMAVSMLDKKADQ 297


>gi|149175515|ref|ZP_01854136.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
 gi|148845783|gb|EDL60125.1| ribosomal protein S1-like RNA-binding domain [Planctomyces maris
           DSM 8797]
          Length = 828

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ +  +  + E  ++ +G V+ V+DFGAFV        L+H+S+++   +      V  
Sbjct: 653 KQGVLKLEQLTEGMEL-QGTVLNVVDFGAFVDVGLKDSALIHVSEMANHFIENPYQFVSV 711

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD +   +L  D +R ++ L++
Sbjct: 712 GDVITAWVLGVDLERRRVSLTL 733


>gi|150401132|ref|YP_001324898.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           aeolicus Nankai-3]
 gi|150013835|gb|ABR56286.1| translation initiation factor 2, alpha subunit [Methanococcus
           aeolicus Nankai-3]
          Length = 262

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  +I  G V+ V  FGAFV       ++G++H+S++S+  V    D VK+G  V  K+
Sbjct: 6   PEEGEIVIGTVIDVKPFGAFVELLDYPKKEGMIHVSEVSSGWVKNIRDFVKKGQRVVAKV 65

Query: 675 LDFDDRG-KIKLSMKVV 690
                R  +I LS+K V
Sbjct: 66  TRSQKRKSQIDLSLKRV 82


>gi|288905732|ref|YP_003430954.1| S1 RNA binding domain protein [Streptococcus gallolyticus UCN34]
 gi|325978764|ref|YP_004288480.1| RNA binding S1 domain-containing protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732458|emb|CBI14030.1| putative S1 RNA binding domain protein [Streptococcus gallolyticus
           UCN34]
 gi|325178692|emb|CBZ48736.1| RNA binding S1 domain protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 710

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVK 629
           +E     +NI  +    I +  L      R+   +     +V  I         +G V  
Sbjct: 585 IETMAETINIGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLDISDLEIGQKLEGTVRN 644

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+DFGAFV      DGL+HISQ+S   V   S VV  GD V V +   D +RGKI LS+ 
Sbjct: 645 VVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSVGDVVTVWVSKIDKERGKINLSLV 704

Query: 689 VVDQ 692
            + +
Sbjct: 705 DLRE 708


>gi|306831829|ref|ZP_07464985.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426027|gb|EFM29143.1| YhgF like protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 710

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 578 VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--------YKGQVVK 629
           +E     +NI  +    I +  L      R+   +     +V  I         +G V  
Sbjct: 585 IETMAETINIGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLDISDLEIGQKLEGTVRN 644

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V+DFGAFV      DGL+HISQ+S   V   S VV  GD V V +   D +RGKI LS+ 
Sbjct: 645 VVDFGAFVDIGLHDDGLIHISQMSKSFVKHPSQVVSVGDVVTVWVSKIDKERGKINLSLV 704

Query: 689 VVDQ 692
            + +
Sbjct: 705 DLRE 708


>gi|88802812|ref|ZP_01118339.1| putative RNA binding protein with S1 RNA-binding domain
           [Polaribacter irgensii 23-P]
 gi|88781670|gb|EAR12848.1| putative RNA binding protein with S1 RNA-binding domain
           [Polaribacter irgensii 23-P]
          Length = 684

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRV-EIMAIPPDQIRNVIGMGGKVIR-G 576
            A +QA         E     S    ++     ++ + + I         G    + R  
Sbjct: 508 KAFEQAAGFLRIKHGENPLDNSAVHPEMYSLVKKMAKDLKISVS---TFFGNSALLQRIS 564

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE------VNKIYKGQVVKV 630
           + + T   + I     +            A   + S     +      + ++  G V  +
Sbjct: 565 LQQYTSETIGIVTLKDIIKELEKPGADPRAIAKVFSFDATIKTIADLRIGQVLPGIVNNI 624

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            +FG FV       GL+H+S LS   V   + +V     + VK+L+ D  R +I+L++
Sbjct: 625 TNFGCFVDIGTKESGLIHVSNLSNTFVKDVNAIVTLQQQIMVKVLEVDLPRKRIQLAL 682


>gi|260582728|ref|ZP_05850515.1| transcriptional accessory protein [Haemophilus influenzae NT127]
 gi|260094178|gb|EEW78079.1| transcriptional accessory protein [Haemophilus influenzae NT127]
          Length = 770

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
            A +Q          +     S    +      ++  +      I++++G  G     +V
Sbjct: 545 KAFEQCAGFMRIAEGKNPLDASGVHPEAYPVVEKI--LQATAQSIQDLMGNAG-----VV 597

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQ 626
            Q  AK  ID+   +        E+E      R                  +   I +G 
Sbjct: 598 RQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKSGMILEGT 657

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDDRGKIKL 685
           V  V +FGAFV     +DGLVHIS LS + V     VVK G+      L     R +I L
Sbjct: 658 VTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLDVDVPRKRIAL 717

Query: 686 SMKVVDQNTGK 696
           +M+ +D++  K
Sbjct: 718 TMR-LDESAVK 727


>gi|195436234|ref|XP_002066074.1| GK22168 [Drosophila willistoni]
 gi|194162159|gb|EDW77060.1| GK22168 [Drosophila willistoni]
          Length = 1236

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 644 DGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +GLVHISQL +  RV   ++VV    TV VK++    + K+ LSMK VDQ +G+ +
Sbjct: 304 EGLVHISQLRAEGRVTDVTEVVSRNQTVKVKVMSITGQ-KVSLSMKEVDQESGRDL 358


>gi|171686100|ref|XP_001907991.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943011|emb|CAP68664.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1779

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +  +I  G+V KV DFGAF+   G     GL H S+++   +     +  EGD V  ++L
Sbjct: 1293 KEGQIVTGKVRKVEDFGAFIDIDGSDRLSGLCHRSEMADRAIKDAKALYSEGDKVKARVL 1352

Query: 676  DFDDR-GKIKLSMK 688
              +++  +I L +K
Sbjct: 1353 KVEEKTKRINLGLK 1366



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G +VK++D GA V F G   G + +S++S   +    +  +EG T+ V +L FD   K
Sbjct: 635 GTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKEHFREGQTISVYVLSFDPEEK 692



 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           G  V       GLV    LS   +       +EG  V  ++L  +  R +++L++K    
Sbjct: 555 GLIVKVAEGISGLVPEMHLSDVHLQHPEKKFREGMKVKTRVLSTNPARHQLRLTLKKTLV 614

Query: 693 NTGKPIV 699
           N+  P V
Sbjct: 615 NSDAPPV 621



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +D   K +S S  +   A ++     +   + KI K +V    D    V       G + 
Sbjct: 888 EDVQAKASSKSADKAMNALDLSVLTMEDLPIGKITKARVKSAKDTQINVDLADNIQGRID 947

Query: 649 ISQLSTER-----VAKTSDVVKEGDTVWVKLLDFDD 679
           +SQ+  +      V K     K GD + V++L   D
Sbjct: 948 VSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHD 983



 Score = 37.6 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           A +  +    D   V  +  G +  +    AFV F G    L+  ++L  +   K S   
Sbjct: 799 AKKGKLLHTIDRARVGDVVPGFIRNITATAAFVQFAGRLTALLPKTKLPRDIQDKPSFGF 858

Query: 665 KEGDTVWVKLLDFD-DRGKI 683
           ++  +V VK+   D D  +I
Sbjct: 859 QKLQSVTVKITSVDKDLNRI 878


>gi|195166781|ref|XP_002024213.1| GL22907 [Drosophila persimilis]
 gi|194107568|gb|EDW29611.1| GL22907 [Drosophila persimilis]
          Length = 328

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           G++ + +  +  + G+L    GS+    G+T+ + +V       E    +          
Sbjct: 39  GKNPKKLSPL-LRAGVLTTVRGSAYMEYGNTKVMAIV---APPHELMRATARRMNMGVIN 94

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
              NF   ATGE+  +     RE   G +  +A+ PV+ +T    + L I   I + DG 
Sbjct: 95  CFVNFAAFATGELESVPE---REKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGC 151

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
                +    +AL++ G+     V      + +D 
Sbjct: 152 LLSTAINCCGVALVECGISTYDLVTASTACIYRDN 186



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYD----RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T V+A V       R+     +   +        +A G++       ES P
Sbjct: 59  GSAYMEYGNTKVMAIVAPPHELMRATARRMNMGVINCFVNFAAFATGEL-------ESVP 111

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +  M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 112 -EREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 170

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               V  +          LNP   E++
Sbjct: 171 TYDLVTASTACIYRDNVFLNPTAKEEE 197


>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 191

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 16/158 (10%)

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
           D   +R+I  ++  L R  GS+LF  GDT  +  V  G  E       L      +  + 
Sbjct: 2   DVMEMRNIHCELDPLSRPDGSALFALGDTMTLSAV-YGPAEV--RPQKLL---TENATVE 55

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
             F        S+ G PS  +              +  +     ++ I+ +  +  G   
Sbjct: 56  VLFK-------SKNGVPSISDKIKEVSLNNICKTAILSSQHPRTSISIIVQEMQDYGGLL 108

Query: 438 MATVCGSSLALMDAGVPISKPVAG---IAMGLVKDGDD 472
             +V  + LAL++AG+P+    A        LV DG D
Sbjct: 109 ACSVNSACLALLNAGIPLKYVFAADSKANFTLVFDGVD 146


>gi|258404494|ref|YP_003197236.1| Tex-like protein protein-like protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257796721|gb|ACV67658.1| Tex-like protein protein-like protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 703

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDF-D 678
            I  G V  ++DFGAFV      DGL+HIS+LS  RV+   +V+     +  +++L    
Sbjct: 633 DIVSGVVRSIVDFGAFVDVGLKNDGLIHISELSHSRVSHPLEVLAVNQYLPRIRVLRVFP 692

Query: 679 DRGKIKLSMKV 689
           ++G++ LS+K 
Sbjct: 693 EKGQVALSLKE 703


>gi|159475150|ref|XP_001695686.1| RNA binding protein [Chlamydomonas reinhardtii]
 gi|158275697|gb|EDP01473.1| RNA binding protein [Chlamydomonas reinhardtii]
          Length = 360

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            + +G V  V D+GAF+   G  D  GLVH S+++  R+    +V+K G  V  K+L  D
Sbjct: 177 DVIEGVVTGVEDYGAFIQIKGLPDVFGLVHKSEVTWARILTVDEVLKLGQEVRAKVLSVD 236

Query: 679 DRG-KIKLSMKVVDQNT 694
               ++ LS+K +  + 
Sbjct: 237 VANCRLALSIKQLTTDP 253


>gi|82540029|ref|XP_724361.1| ATP-dependent helicase Ddx8 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478978|gb|EAA15926.1| ATP-dependent helicase ddx8 [Plasmodium yoelii yoelii]
          Length = 744

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLST--ERVAK 659
              E         ++N I+ G++ K+ DFG FV F    G ++GLVHI+ +    +R+  
Sbjct: 212 KYDENSEDDYRALKINNIFSGKIKKITDFGMFVSFKTREGYKEGLVHITDIEKNNKRI-N 270

Query: 660 TSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            +D  K    V VK+       KI L+M  VDQ TGK + 
Sbjct: 271 LNDKFKRNMIVKVKIKGIFGE-KISLNMSEVDQKTGKNLA 309


>gi|305665496|ref|YP_003861783.1| putative RNA binding protein with S1 RNA-binding domain [Maribacter
           sp. HTCC2170]
 gi|88710252|gb|EAR02484.1| putative RNA binding protein with S1 RNA-binding domain [Maribacter
           sp. HTCC2170]
          Length = 707

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 16/157 (10%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDD 589
           I+ +M+K L +   +L      ++ + +      NV   G   ++ I+++     ++  +
Sbjct: 561 IVEKMAKDLGKGVSELIGNKQLLQGIDLNNYCTENV---GLFTLKDIIQELEKPGLDTRE 617

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              V   +          + I+SI D+ E  ++  G V  + +FG FV       GL+H+
Sbjct: 618 KAKVFTFN----------QNIKSIADLHEG-QLLPGIVNNITNFGCFVDIGIKESGLIHV 666

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           S L+   V   ++ V     + VK+LD D  R +I+L
Sbjct: 667 SNLADAFVKDVNEHVSLHQQIIVKVLDIDVPRKRIQL 703


>gi|300362224|ref|ZP_07058400.1| S1 RNA binding domain protein [Lactobacillus gasseri JV-V03]
 gi|300353215|gb|EFJ69087.1| S1 RNA binding domain protein [Lactobacillus gasseri JV-V03]
          Length = 121

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  I  G++  +  +G FV      +GL+HIS++    V       + G+T+ V++
Sbjct: 1   MQVKIGDIVHGKISGIQQYGIFVRLDSKVEGLIHISEIHGGYVKDIGREYQVGETIKVQV 60

Query: 675 LDFDD-RGKIKLSMKVVDQN 693
           +D D    +I LS + V   
Sbjct: 61  IDIDPYSNQISLSRRAVLPE 80


>gi|116629119|ref|YP_814291.1| RNA-binding protein [Lactobacillus gasseri ATCC 33323]
 gi|238853861|ref|ZP_04644226.1| RNA binding protein [Lactobacillus gasseri 202-4]
 gi|282852164|ref|ZP_06261521.1| S1 RNA binding domain protein [Lactobacillus gasseri 224-1]
 gi|116094701|gb|ABJ59853.1| RNA binding protein (S1 domain) [Lactobacillus gasseri ATCC 33323]
 gi|238833556|gb|EEQ25828.1| RNA binding protein [Lactobacillus gasseri 202-4]
 gi|282556728|gb|EFB62333.1| S1 RNA binding domain protein [Lactobacillus gasseri 224-1]
          Length = 121

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  I  G++  +  +G FV      +GL+HIS++    V       + G+T+ V++
Sbjct: 1   MQVKIGDIVHGKISGIQQYGIFVRLDSKVEGLIHISEIHGGYVKDIGREYQVGETIKVQV 60

Query: 675 LDFDD-RGKIKLSMKVVDQN 693
           +D D    +I LS + V   
Sbjct: 61  IDIDPYSNQISLSRRAVLPE 80


>gi|158819077|ref|NP_001103659.1| exosome component 6 [Bos taurus]
 gi|157743163|gb|AAI53218.1| EXOSC6 protein [Bos taurus]
          Length = 272

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 14/239 (5%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +      RD   +R + A+ GLL +  GS+    G T+ +  V+ G R  E         
Sbjct: 24  EGEEPAPRDPARLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRPAEGGERGGGPA 82

Query: 370 Q---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
                     R   +  +   P + G   R       E       + A+ P +       
Sbjct: 83  GAGGEAPAALRGRLLCDFRRAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPR 141

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD-GDDFIILSDI 479
             L + + + E  GS+  A +  ++LAL DAGV +   V G  +         +++   +
Sbjct: 142 AQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSRAPAPAPAWLLDPTL 201

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +E     +   +    + +  +    + G         A++    G   +   + + 
Sbjct: 202 LEEERASAGLTVALMPVLNQVAGVLGSGEGG--PTESWAEAVRLGLEGCQRLYPVLQQC 258



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 27/210 (12%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---------------LTVNYQERTYAV 70
           Q+ G+     G T VL  V   R  + G+                   L  +++   ++ 
Sbjct: 48  QAKGSAYLEAGGTKVLCAVSGPRPAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFS- 106

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                G  RR       E  ++  +  ++ P          Q+ ++ +  +   S    +
Sbjct: 107 -----GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAA 161

Query: 131 MVAASAALMLSGLPFEGPVVGA---QVDYINGQYVLNPR-LDEDQGSLDLFVS--GTQDA 184
           + AA+ AL  +G+     VVG    +       ++L+P  L+E++ S  L V+     + 
Sbjct: 162 LTAAALALADAGVEMYDLVVGCGLSRAPAPAPAWLLDPTLLEEERASAGLTVALMPVLNQ 221

Query: 185 VLMVELEANQLSEDVVLDAIIFGHNECKPV 214
           V  V         +   +A+  G   C+ +
Sbjct: 222 VAGVLGSGEGGPTESWAEAVRLGLEGCQRL 251


>gi|300173688|ref|YP_003772854.1| polyribonucleotide nucleotidyltransferase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888067|emb|CBL92035.1| Polyribonucleotide nucleotidyltransferase [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 127

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
                + +   G +  +  +GAFV       GL+HIS+  T  V    + +K G  V V 
Sbjct: 1   MMDYHIGQKVSGHITGIKPYGAFVVLDDHVQGLIHISECKTGVVRALKNELKIGQKVVVT 60

Query: 674 LLDFDD-RGKIKLSMKVVD 691
           +LD +    KI LS++  D
Sbjct: 61  VLDIEQYNNKISLSLRQDD 79


>gi|255082708|ref|XP_002504340.1| predicted protein [Micromonas sp. RCC299]
 gi|226519608|gb|ACO65598.1| predicted protein [Micromonas sp. RCC299]
          Length = 2018

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            G  +++D+       +     ++AA    +       E   +  G V +V  +G FV   
Sbjct: 1441 GTILSVDESSGRAEMTLRSDGMDAAAGRSQIDNNAHVEEGSVQMGTVRRVQTYGVFVTLD 1500

Query: 641  G-ARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
            G  R GL HIS  +  R+  +    V+ G+ V VK+L  D+  GKI L MK
Sbjct: 1501 GSGRSGLCHISMFADARIKDSLEQHVRAGERVRVKVLQVDEETGKISLGMK 1551



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 634  GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            G FV     + G VH++ ++ +  ++   +   G+ V V++L   + G++ LSMK
Sbjct: 1313 GVFVQLNSRQHGRVHVTDIADDPRSEPWKLHSVGEAVEVRVLGVGEGGEVDLSMK 1367



 Score = 44.5 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 2/155 (1%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
               V  E    + +  P V+ +  PP+ I ++ G               +V   D    
Sbjct: 496 RGEVVAVEPYGAVVKLAPGVKALC-PPNHISDIPGRVTNAKVKEGLSAKFRVVSVDRVKG 554

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           +   +   ++  +   + +  D         G V  V  +G FV   G   GL  +  L 
Sbjct: 555 RAVVTHKKQLIRSELPVVASLDDATPGTTTHGVVTGVEPYGVFVQLYGNLRGLAGLQDLG 614

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
                   +    G  V   ++  D    KIKLS+
Sbjct: 615 LAADQTPQEAFAVGQVVRATVIRSDRGEQKIKLSL 649



 Score = 41.4 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 622 IYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVA---KTSDVVKEGDTVWVKLLDF 677
           IY G V     + G FV F G   GL   SQL+   VA      ++   G TV  +++  
Sbjct: 774 IYPGYVASATANAGVFVRFLGRLTGLAPPSQLTDVPVAGGVDPEEMFALGQTVLARVVSV 833

Query: 678 D---DRGKIKLSM 687
           D   +  ++ LS+
Sbjct: 834 DATVEPPRLSLSL 846


>gi|159905349|ref|YP_001549011.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis C6]
 gi|159886842|gb|ABX01779.1| translation initiation factor 2, alpha subunit [Methanococcus
           maripaludis C6]
          Length = 265

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  K+
Sbjct: 6   PEEGDIVIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKV 65

Query: 675 LDFDD-RGKIKLSMK-VVDQN 693
           +     + +I LS+K   DQ 
Sbjct: 66  MRVTPHKNQIDLSLKRATDQQ 86


>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
 gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
          Length = 276

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 94/261 (36%), Gaps = 39/261 (14%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           D+ +R DGR     R +S  +   ++  GS+L   GDT  +  V +   E          
Sbjct: 24  DRGIRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEP-----FEDT 78

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQTAQFP 420
             + + +++   LP A  E    G P    I   R+  R++          ++ +  +  
Sbjct: 79  PNQGNLVVNVELLPLAY-ETFEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKI 137

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMD---------------------AGVPISKPV 459
           +T+ +   + +  G+   A    +  AL D                       +P++ PV
Sbjct: 138 WTVWVDIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPV 197

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
             +++  +  G   ++  D+  DE+ +      ++ T  G         IG  +   +  
Sbjct: 198 VTVSVAKI--GKHLVVDPDL--DEEGIMDAKISLSYTPEGRIVGIQKTGIGTFTLTEIDN 253

Query: 520 ALQQAKRGRLHILNEMSKVLS 540
               A+     +L E+ K ++
Sbjct: 254 VETLARSVSQKLLEELKKQIN 274



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 73/190 (38%), Gaps = 42/190 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQ-DFFPLTVNYQERTYAVG 71
           RPL + T   A+++DG+ L   G+T VLA V V      +   +   L VN +    A  
Sbjct: 38  RPLSI-TLSYAKKADGSALVKLGDTTVLAGVKVEPEEPFEDTPNQGNLVVNVELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQHD 121
               G       P EN I +SR++DRS+R       SK             V I V+ + 
Sbjct: 97  TFEPGP------PDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTVWVDIYVLDY- 149

Query: 122 LESSPHVVSMVAASAALMLS---------------------GLPFEGPVVGAQVDYINGQ 160
             +     ++ A S AL  +                      LP   PVV   V  I   
Sbjct: 150 GGNILDACTLAAVS-ALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPVVTVSVAKIGKH 208

Query: 161 YVLNPRLDED 170
            V++P LDE+
Sbjct: 209 LVVDPDLDEE 218


>gi|219851600|ref|YP_002466032.1| translation initiation factor IF-2 subunit alpha [Methanosphaerula
           palustris E1-9c]
 gi|219545859|gb|ACL16309.1| translation initiation factor 2, alpha subunit [Methanosphaerula
           palustris E1-9c]
          Length = 261

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE  ++    V  V DF AFV       R+GL+ IS+++T  +    D + EG  +  K+
Sbjct: 7   PEEGELVVCTVATVKDFVAFVQLDEYHGREGLIPISEIATGWIKYIRDHISEGQKIVCKV 66

Query: 675 LDFD-DRGKIKLSMKVVDQNTGKP 697
           L  D  +G I LS+K V+ +  + 
Sbjct: 67  LHVDTQKGHIDLSLKDVNDHQRRE 90


>gi|319953398|ref|YP_004164665.1| tex-like protein [Cellulophaga algicola DSM 14237]
 gi|319422058|gb|ADV49167.1| Tex-like protein [Cellulophaga algicola DSM 14237]
          Length = 707

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 98/257 (38%), Gaps = 34/257 (13%)

Query: 439 ATVCGSSLALMDAGVPISKPVAGI-------AMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           + V    + +  A VP+   V+GI        +    +   F   ++I            
Sbjct: 475 SCVNAVGVNINTASVPLLSYVSGIGPKLAENIVAYRNENGAFTSRTEIKKV------PRL 528

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTP 551
                + G   +++      + +             R  ++  M+K    S  ++     
Sbjct: 529 GGKAFEQGAAFLRIKDAKNPLDD-------SAVHPERYDLIKSMAKEKGISIKEIIGNKS 581

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
            +E + +      ++   G   ++ IV++   K  +D        +   A++    + I+
Sbjct: 582 ILESINLNAYCSEDI---GLPTLKDIVKEL-EKPGLD--------TREKAKVFTFDQHIK 629

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           SITD+ E   +  G V  + +FG FV       GL+HIS LS   V   ++ V     + 
Sbjct: 630 SITDLHEGL-VLPGIVNNITNFGCFVDIGIKESGLIHISNLSDTFVKDVNEHVSLQQQIT 688

Query: 672 VKLLDFD-DRGKIKLSM 687
           VK+++ D  R +I+L++
Sbjct: 689 VKVMEVDVARKRIQLAL 705


>gi|312127611|ref|YP_003992485.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777630|gb|ADQ07116.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 663

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 568 GMGGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G   K +  I E+   K+ +ID +      S    + +   + I+++     +  +   +
Sbjct: 513 GADLKKLFEIGEKVKVKILDIDKNKKQIYLSIKKTQDDEWIKKIKNLY----LGMLVDCE 568

Query: 627 VVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           V KV+ FG  V       DG VHIS +      +  +V K GD++  K+++ D ++ ++ 
Sbjct: 569 VTKVLPFGLVVWITEHDVDGFVHISNIPLGYNQRPHNVYKVGDSLRAKVIEIDEEKRRVA 628

Query: 685 LSMKVVDQNT 694
           LS+K + +  
Sbjct: 629 LSLKDLHEEE 638



 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           I+       L +     L + ++ S   ++    L E  P      I   +  + I +  
Sbjct: 198 INRQKEAQELAKHVDMMLVVGDKKSSNTNKLYQLLKEIKPT---FFIDKVEDLDSIKL-D 253

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR---SITDVPEVNKIYKGQVV 628
             I+ I    GA  + +    V           + ++  R         +  ++ KG+++
Sbjct: 254 SHIKSIGVTAGASTSPEQIEEVVKHLEEKFNEMSLKDFERFIGRNFLTVQRGEVVKGRII 313

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKLLDFDDRGKIKLS 686
           KV +    V      +G+++  ++         D+ K G+T+  V + + D+ G + LS
Sbjct: 314 KVEEDYVLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGETIEAVVIKESDEEGNVVLS 372


>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
 gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
          Length = 283

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V   ++  V++ ++ ++ VR+D R     R++S +V +++   GSSL   G+T+ +  V 
Sbjct: 10  VIPKLKQDVMKKMI-EQGVRIDNRGLNDYRELSIRVNVVKTADGSSLVSLGNTKVMAGV- 67

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA----- 408
               + E              +++    P A+ ++   G P    I   R+  RA     
Sbjct: 68  ----KVEVGKPFEDTPDEGALIVNLEIAPTASPDIEP-GPPDENAIEIARVVDRAIRHSG 122

Query: 409 ---IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
                 +   T +  + L +   +   DG+   A+   +  ALM+  +P
Sbjct: 123 FLDFKSLSIVTGKHAWFLWVDIYVLNHDGNLVDASTIAAVAALMNTALP 171



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 21/143 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVG 71
           R L +    + + +DG+ L + G T V+A V  +  +  +D  D   L VN +    A  
Sbjct: 38  RELSIRVNVV-KTADGSSLVSLGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPTASP 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIR-PLFSKCYKNETQ---------VIINVMQHD 121
            I  G       P EN I I+R++DR+IR   F                  V I V+ HD
Sbjct: 97  DIEPGP------PDENAIEIARVVDRAIRHSGFLDFKSLSIVTGKHAWFLWVDIYVLNHD 150

Query: 122 LESSPHVVSMVAASAALMLSGLP 144
             +     S +AA AALM + LP
Sbjct: 151 G-NLVD-ASTIAAVAALMNTALP 171


>gi|224543031|ref|ZP_03683570.1| hypothetical protein CATMIT_02225 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524056|gb|EEF93161.1| hypothetical protein CATMIT_02225 [Catenibacterium mitsuokai DSM
           15897]
          Length = 119

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +     V  I    +  +  +GAF        GL+HIS++S   V   +  V  G+ V V
Sbjct: 1   MEHQVHVGDIVDVTITGIQPYGAFALLPDGSSGLIHISEISDGFVRDVNQFVFYGEQVKV 60

Query: 673 KLLDFDD-RGKIKLSMKVV 690
           K++D D+   + +LS+K V
Sbjct: 61  KVIDIDNVHHQARLSLKAV 79


>gi|71281662|ref|YP_271604.1| putative transcription accessory protein [Colwellia psychrerythraea
           34H]
 gi|71147402|gb|AAZ27875.1| putative transcription accessory protein [Colwellia psychrerythraea
           34H]
          Length = 796

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V +FGAFV     +DGLVHIS ++ + ++   ++VK G+ V VK+++ D  
Sbjct: 659 MILEGVVSNVANFGAFVDIGVHQDGLVHISSITEKFISDPREIVKAGEVVKVKVVEVDIA 718

Query: 680 RGKIKLSMKVVDQ---NTGKP 697
           R +I L+M++ +Q    T KP
Sbjct: 719 RKRISLTMRLEEQVSAQTSKP 739


>gi|150402906|ref|YP_001330200.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis C7]
 gi|150033936|gb|ABR66049.1| translation initiation factor 2, alpha subunit [Methanococcus
           maripaludis C7]
          Length = 265

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  K+
Sbjct: 6   PEEGDIVIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKV 65

Query: 675 LDFDD-RGKIKLSMK-VVDQN 693
           +     + +I LS+K   DQ 
Sbjct: 66  MRVTPHKNQIDLSLKRATDQQ 86


>gi|218461415|ref|ZP_03501506.1| RNA binding S1 domain protein [Rhizobium etli Kim 5]
          Length = 717

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           AI P Q  +    G   +R I+ +             +    S      A  +       
Sbjct: 598 AIDPRQFVDE-KFGLPTVRDIIAELEKP--------GRDPRPSFKTATFAEGVNEISDLK 648

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           P +  + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++
Sbjct: 649 PGM--VLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVE 706

Query: 677 FD-DRGKIKLS 686
            D  R +I LS
Sbjct: 707 VDAKRKRIALS 717


>gi|302838251|ref|XP_002950684.1| hypothetical protein VOLCADRAFT_104808 [Volvox carteri f.
           nagariensis]
 gi|300264233|gb|EFJ48430.1| hypothetical protein VOLCADRAFT_104808 [Volvox carteri f.
           nagariensis]
          Length = 356

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWV 672
              E   +    V  V D+GAFV   G  +  GLVH S++S +R+     VV  G  V  
Sbjct: 171 RRIEPGAVLTCVVTAVEDYGAFVQVKGMPEVVGLVHKSEVSWDRIMTVDQVVSIGQEVVA 230

Query: 673 KLLDFDDRG-KIKLSMKVVDQNT 694
           K+L  D    ++ LSMK +  + 
Sbjct: 231 KVLSVDANNVRLTLSMKQMSTDP 253


>gi|227488608|ref|ZP_03918924.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227543211|ref|ZP_03973260.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227091502|gb|EEI26814.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227181020|gb|EEI61992.1| transcription accessory protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 806

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
            G   IR I+ +      +D  G         A  +   E +  +T       I +G V 
Sbjct: 621 FGEPTIRDILSE------LDKPGRDPRPDFHTATFKEGVEKVSDLTP----GMILEGTVT 670

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDDRGKIKLSM 687
            V  FGAFV     +DGLVH+S +S   V+   DVVK GD      L     R +I L++
Sbjct: 671 NVAAFGAFVDVGVHQDGLVHVSAMSHSFVSDPHDVVKNGDIVKVKVLDVDVLRNRISLTL 730

Query: 688 KVVDQNTGK 696
           ++ D+   +
Sbjct: 731 RLDDEPGDE 739


>gi|227512137|ref|ZP_03942186.1| RNA binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227524134|ref|ZP_03954183.1| RNA binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227084531|gb|EEI19843.1| RNA binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227088712|gb|EEI24024.1| RNA binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 136

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V    KG V  +  +G FV       GL+HIS+  +  V   + +   G+TV   ++D 
Sbjct: 15  KVGMKVKGVVTGIQPYGVFVDLGNQNQGLIHISECQSGYVEDINQLFSVGETVSSLIIDI 74

Query: 678 DD-RGKIKLSMK 688
           D+  GKI LS +
Sbjct: 75  DEYTGKISLSTR 86


>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.14.25]
 gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.16.27]
 gi|259645402|sp|C3N5R4|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
 gi|259645405|sp|C3MVG5|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
 gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
 gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
          Length = 275

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 39/269 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  K     + +K  R DGR     R +S  +   ++  GS+L   G T  +    L   
Sbjct: 13  LIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKL--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
            D+ Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 71  IDKPYEDT---PNQGNLIVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLRDSKALDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    S  AL +  V                
Sbjct: 127 TKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNE 186

Query: 454 -----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                P++ PV  +++  V   D ++I+ D   DE+ +       + T            
Sbjct: 187 VVGKLPLNHPVVTVSIAKV---DKYLIV-DPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +S   +  A   A+   + +L E+ K
Sbjct: 243 KGSMSLQDIDQAENTARLVAVKLLEELKK 271



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 46/248 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL + T   A+++DG+ L   G T+VLA      D+  +D  +   L VN +    A  
Sbjct: 38  RPLSI-TLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVM----QHDLE 123
               G       P EN I ++R++DRS+R       +K      + +  V       D  
Sbjct: 97  TFEPGP------PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYG 150

Query: 124 SSPHVVSMVAASAALM---------------------LSGLPFEGPVVGAQVDYINGQYV 162
            +      +A+ AAL                      +  LP   PVV   +  ++   +
Sbjct: 151 GNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLI 210

Query: 163 LNPRLDEDQGSLD--LFVSGTQD-AVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++P LDE +  +D  +  S T D  ++ ++      +S   +  A           ++ +
Sbjct: 211 VDPDLDE-ESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVA---VKLL 266

Query: 219 SKLAKMCA 226
            +L K   
Sbjct: 267 EELKKQLG 274


>gi|58697128|ref|ZP_00372563.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536577|gb|EAL59920.1| 30S ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 237

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLDFD-DRGKIKL 685
             + D+G FV      +GLVH S+++  +     S +V  G  V+VK+L  D  + ++ L
Sbjct: 5   TSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSIDIAKSRMSL 64

Query: 686 SMKVVDQNTGK 696
           SMK    N  +
Sbjct: 65  SMKRCVDNPWQ 75



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDV 663
             +   +      I  G+V         V           +G +++   S       SD 
Sbjct: 73  PWQVFINKYPPGSIVSGEVKNNTGSYVSVAFGDSEIDENVEGTIYVKDFSWS--KNGSDE 130

Query: 664 VK---EGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +K    GD +  K++  + +R +I L +K ++ +  + ++
Sbjct: 131 IKKYNVGDKIEAKVIRANVNRARIYLGIKQIEYDPLEELI 170


>gi|262066813|ref|ZP_06026425.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379479|gb|EFE86997.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 827

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-KTSDVVKE 666
           +   ++ +  +V     G V KV+ +GAFV      +GLVHIS  S  +     ++ VKE
Sbjct: 550 DPWATVANEFKVGDEVDGVVTKVLPYGAFVEIKAGVEGLVHISDFSWTKKKVNVAEYVKE 609

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+ V VK+ D   +  K+KL +K +  N  
Sbjct: 610 GEKVKVKITDLHPEDRKLKLGIKQLVANPW 639



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
           G+ ++ IV+     + +D         +   +     E  +    + EV +     V +V
Sbjct: 433 GRKVQVIVKD----IKVDPKDKKNKKITYSVKDIKLAEQAKEFAGL-EVGQAVDCVVTEV 487

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKV 689
           ++FG  V     + G +HIS++S +R+ K +D  K GD V   ++  D+  K +KLS+K 
Sbjct: 488 LEFGLAVDINALK-GFIHISEVSWKRLDKLADTYKVGDKVKAVVVSLDEAKKNVKLSIKK 546

Query: 690 VDQNTG 695
           ++ +  
Sbjct: 547 LEADPW 552



 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 576 GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA 635
            I  +   K+   D    KI  S  A     +       +  +V    + ++  V DFG 
Sbjct: 692 EIGNEVELKITELDLNDRKIKGSLKALR---KSPWEHAMEEYKVGTTVEKKIKTVADFGL 748

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           FV      DG +     S E +    D   EGD V  ++++ + +  KIKLS
Sbjct: 749 FVELTKGIDGFIPTQFASKEFIKNIRDKFNEGDVVKAQVVEVNKETQKIKLS 800



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              S      V+ + KG+VV+V  FG FV      D  VH S  +           + G+
Sbjct: 638 PWDSAEKDYAVDTVIKGKVVEVKPFGIFVELTDGIDAFVHSSDYNWIGEETPK--FEIGN 695

Query: 669 TVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V +K+ + D +  KIK S+K + ++  +
Sbjct: 696 EVELKITELDLNDRKIKGSLKALRKSPWE 724


>gi|302557132|ref|ZP_07309474.1| transcriptional accessory protein [Streptomyces griseoflavus
           Tu4000]
 gi|302474750|gb|EFL37843.1| transcriptional accessory protein [Streptomyces griseoflavus
           Tu4000]
          Length = 742

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD      L     
Sbjct: 654 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKVKVLDVDVP 713

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L++++ D+   +
Sbjct: 714 RKRISLTLRLDDEAAPQ 730


>gi|42518598|ref|NP_964528.1| hypothetical protein LJ0502 [Lactobacillus johnsonii NCC 533]
 gi|227888679|ref|ZP_04006484.1| RNA binding protein [Lactobacillus johnsonii ATCC 33200]
 gi|41582883|gb|AAS08494.1| hypothetical protein LJ_0502 [Lactobacillus johnsonii NCC 533]
 gi|227850706|gb|EEJ60792.1| RNA binding protein [Lactobacillus johnsonii ATCC 33200]
          Length = 123

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  I  G++  +  +G FV      +GL+HIS++    V       + G+T+ V++
Sbjct: 1   MQVKIGDIVHGKISGIQQYGIFVRLDSQIEGLIHISEIHGGYVKDIGREYQVGETIKVQV 60

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           +D D    +I LS + V     +
Sbjct: 61  IDIDPYSNQISLSRRAVLPEVEE 83


>gi|119513349|ref|ZP_01632384.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
 gi|119461989|gb|EAW42991.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
          Length = 284

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S   + ++N++ +G+V  +  FG FV        L+HI Q+S + +     V + G T+ 
Sbjct: 175 SSFSLLQLNQLVEGRVTGIKPFGIFVDL-DGLSALLHIKQVSQKYIESLEKVFQIGQTIK 233

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
             ++D D+ +G++ +S +V++   G+
Sbjct: 234 AVIIDLDEGKGRVAISTRVLENFPGE 259



 Score = 41.8 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL-DFDD 679
           ++ +G+V ++   GA+V   G     +   + S   V   S+V+   + +   ++ D D 
Sbjct: 19  QVVRGKVFQLDPNGAYVDIGGKSSAFLPREEASLRAVTDLSEVLPLQEELEFLIIRDQDA 78

Query: 680 RGKIKLSMKVVD 691
            G++ LS K ++
Sbjct: 79  EGQVTLSRKQLE 90


>gi|158421726|ref|YP_001523018.1| RNA binding S1 protein [Azorhizobium caulinodans ORS 571]
 gi|158328615|dbj|BAF86100.1| RNA binding S1 protein [Azorhizobium caulinodans ORS 571]
          Length = 781

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)

Query: 564 RNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAAREMIR------ 611
           + +I   G+ IR ++  +         V +D+   +      L+E+E      R      
Sbjct: 578 KKIISACGRDIRSLMGDSATLKRLDPAVFVDERFGLPTVRDILSELEKPARDPRPEFRTA 637

Query: 612 ------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
                 +     +   + +G V  V  FGAFV     +DGLVH+S L+   V    +VVK
Sbjct: 638 TFMEGVNTMSDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVK 697

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMK 688
            GD V V++++ D  R +I LSM+
Sbjct: 698 AGDIVKVRVVEVDVARKRIALSMR 721


>gi|81428051|ref|YP_395050.1| hypothetical protein LSA0437 [Lactobacillus sakei subsp. sakei 23K]
 gi|78609692|emb|CAI54738.1| Hypothetical protein with an RNA-binding domain [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 125

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +   G V  +  +G FV    +  GL+HIS+     V    +    G  + V +LD D
Sbjct: 5   IGQKVTGTVTGIQPYGVFVALDESVQGLIHISECGHGFVKALDEQFTVGQQLDVLVLDVD 64

Query: 679 D-RGKIKLSMKVV 690
           +   KI LS++ +
Sbjct: 65  EYTHKISLSLRAL 77


>gi|222529318|ref|YP_002573200.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456165|gb|ACM60427.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 663

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 568 GMGGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           G G K +  + E+   K+ +ID +      S    + +   + I+++     +  +   +
Sbjct: 513 GAGIKKLFELGEKVKVKILDIDKNKKQIYLSVKKTQDDEWIKKIKNLY----LGMLVDCE 568

Query: 627 VVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           V KV+ FG  V       DG VH+S +      +  ++ K GD++  K+++ D ++ +I 
Sbjct: 569 VTKVLPFGLVVWITEHDVDGFVHVSNIPLGYNQRPHNLYKVGDSLRAKVIEIDEEKRRIA 628

Query: 685 LSMKVVDQNT 694
           LS+K + +  
Sbjct: 629 LSLKDLHEEE 638



 Score = 38.0 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKL 674
             +  ++  G+++KV +    V      +G+++  ++         D+ K G+ +  V +
Sbjct: 301 TVQRGEVVNGRIIKVEEDYLLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGEVIEAVVI 360

Query: 675 LDFDDRGKIKLS 686
            + D+ G + LS
Sbjct: 361 KESDEEGNVVLS 372


>gi|282897419|ref|ZP_06305421.1| RNA binding S1 [Raphidiopsis brookii D9]
 gi|281198071|gb|EFA72965.1| RNA binding S1 [Raphidiopsis brookii D9]
          Length = 299

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + + +++  G+V  +  FG FV        L+HI Q+S +       V + G  +   ++
Sbjct: 195 LLQTDQLVTGKVTGIKPFGVFVDL-DGVSALLHIKQVSQKFTESLEKVFQIGQEIKGIVI 253

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           D D+ +G++ +S + ++   G+
Sbjct: 254 DIDESKGRVAISTRKLENYPGE 275


>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
          Length = 257

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 91/253 (35%), Gaps = 37/253 (14%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LGTREDEQYVD 364
           M+    R DGR     RDIS +  +++R  GS+    GDT+ +V V   LGT     + D
Sbjct: 17  MVRNGKREDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP----FPD 72

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQT 416
           +     +   + +   +P A+ +    G P+   I   R+  R I          +  + 
Sbjct: 73  T---PDKGVIITNAELVPLASPKFES-GPPNENSIQLARVVDRGIRGSETIDLDKLCIEE 128

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV-------------PISK-PVAGI 462
            +  + + I   + + +G+   A   G+  +L++  +             P+   PVA  
Sbjct: 129 GEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAAT 188

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            +       +  IL D S DE +       V     G  +        G+ E  +   ++
Sbjct: 189 MV-----EIEGNILVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSSGLKEAQIAEMVE 243

Query: 523 QAKRGRLHILNEM 535
                   I  + 
Sbjct: 244 IGIEKAGEIRKKY 256



 Score = 41.4 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 35/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +E   I ++++G+     G+T VL  V       +    FP T +          +
Sbjct: 33  RDISVERDVI-KRAEGSARVKIGDTEVLVGV-----KVELGTPFPDTPDKGVIITNAELV 86

Query: 74  PGGYLRRESR-PTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQHDL 122
           P    + ES  P EN I ++R++DR IR        K    E        + I+V+  D 
Sbjct: 87  PLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVFIDIHVLD-DN 145

Query: 123 ESSPHVVSMVAASAALML------------SGLPF-EGPVVGAQVDYINGQYVLNPRLDE 169
            +     ++ A ++ L L            + LP  + PV    V  I G  +++P  DE
Sbjct: 146 GNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAATMV-EIEGNILVDPSFDE 204

Query: 170 -DQGSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
            +  +  + V    D  L  M +  ++ L E  + + +  G  +   +
Sbjct: 205 GNAAASSVTVISNADGTLSGMQKSGSSGLKEAQIAEMVEIGIEKAGEI 252


>gi|261824464|pdb|2KHJ|A Chain A, Nmr Structure Of The Domain 6 Of The E. Coli Ribosomal
           Protein S1
          Length = 109

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
            M  +   + +   I  G+V  V   GA V      +G +  S+ S +RV   + V+  G
Sbjct: 20  HMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVG 79

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V  K    D + + I LS++  D+   K
Sbjct: 80  DEVEAKFTGVDRKNRAISLSVRAKDEADEK 109


>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
          Length = 271

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 97/266 (36%), Gaps = 35/266 (13%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           I  K     + +K +R DGR     R +S  +   ++  GS+L   G T  +    L   
Sbjct: 13  IIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKL--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
            D+ Y D+     + + +++   LP A       G P    I   R+  R++        
Sbjct: 71  IDKPYEDT---PNQGNLIVNVELLPLAYTTFEP-GPPDENAIELARVVDRSLRDSKALDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    S  AL +  V                
Sbjct: 127 TKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQISVNKNEVVGK 186

Query: 454 -PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
            P++ PV  I++  V   D ++++ D   DE+ +       + T             G +
Sbjct: 187 LPLNYPVVTISVAKV---DKYLVV-DPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSM 242

Query: 513 SENIMVMALQQAKRGRLHILNEMSKV 538
           S   +  A   A+   + +L E+ K 
Sbjct: 243 SLQDIDQAENTARSTAVKLLEELKKH 268



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 39/238 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL + T   A+++DG+ L   G T+VLA      D+  +D  +   L VN +    A  
Sbjct: 38  RPLSI-TLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYT 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVM----QHDLE 123
               G       P EN I ++R++DRS+R       +K      + +  V       D  
Sbjct: 97  TFEPGP------PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYG 150

Query: 124 SSPHVVSMVAASAALM-----------------LSGLPFEGPVVGAQVDYINGQYVLNPR 166
            +      +A+ AAL                  +  LP   PVV   V  ++   V++P 
Sbjct: 151 GNVLDACTLASVAALYNTKVYKVEQISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPD 210

Query: 167 LDEDQGSLD--LFVSGTQD-AVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAISK 220
           LDE +  +D  +  S T D  ++ ++      +S   +  A     +    ++E + K
Sbjct: 211 LDE-ESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKK 267


>gi|219850614|ref|YP_002465047.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219544873|gb|ACL26611.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 539

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 528 RLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI---------------------RNV 566
           RL  + +    L E R  L    P    + I   QI                        
Sbjct: 274 RLVKMADYRAALPELRALLQRSAPNRRSLMIKIMQILVEWNDRASMPLLAQLAESFPNAE 333

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I         I+EQ       ++        +            +       V  I +G 
Sbjct: 334 IRHHAARCLTILEQATTTP--EEPSPPLPDPAPTVLCSERLRKRQERIASVSVGSIVEGT 391

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKL 685
           V++V+ +GA +   G  +G VH+  +    ++   + ++ G  V   + + D +  +I L
Sbjct: 392 VLRVLSYGAVIDL-GGIEGFVHVRDIDWHWISDARNALQLGQPVRAMITNIDRQHLRINL 450

Query: 686 SMKVVDQNTG 695
           S++ +  +  
Sbjct: 451 SIRELTPDPW 460



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S++         +G V  +  FG FV       GL HIS++  +R     +    G
Sbjct: 458 DPWVSLSQHLAGGMTVQGTVTGITGFGLFVELLPGIQGLAHISKIPAKR-RPLREWFPLG 516

Query: 668 DTVWVKLLDFD-DRGKIKLS 686
             V V +L  D +  +I LS
Sbjct: 517 SQVMVTILAIDNEHRRIALS 536


>gi|260430863|ref|ZP_05784835.1| protein YhgF [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418304|gb|EEX11562.1| protein YhgF [Silicibacter lacuscaerulensis ITI-1157]
          Length = 810

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 21/148 (14%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGA------KVNIDDDGTVKIASSSLAEIEAA-------- 606
           D  R ++   G+ IR I+   GA      +  +DD   +       AE+E          
Sbjct: 611 DVARRIVQACGRDIRQIMGNDGALRGLRAEQFVDDRFGLPTVRDIFAELEKPGRDPRPSF 670

Query: 607 -----REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                +E +  ITD+     + +G V  V  FGAFV     +DGLVH+S+L+   V    
Sbjct: 671 VTASFKEGVEEITDLKPG-MVLEGTVTNVAAFGAFVDIGVHQDGLVHVSELADRFVKDPH 729

Query: 662 DVVKEGD-TVWVKLLDFDDRGKIKLSMK 688
           +VVK G       +     R +I LSM+
Sbjct: 730 EVVKAGQVVRVRVVEVDVPRKRIGLSMR 757


>gi|312183607|gb|ADQ42373.1| translation initiation factor IF-2 subunit A [Methanosaeta
           harundinacea]
          Length = 245

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 629 KVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           +V+DFGAFV       + GL+HIS++++  +    D V+EG  +  K+L+ D  R  I L
Sbjct: 7   QVVDFGAFVILDEYANKRGLIHISEVASGWIKYIRDHVREGQKIVCKVLNVDPSRHHIDL 66

Query: 686 SMKVVDQNTGKP 697
           S+K V+++  + 
Sbjct: 67  SLKDVNEHQRRD 78


>gi|217976651|ref|YP_002360798.1| RNA binding S1 domain protein [Methylocella silvestris BL2]
 gi|217502027|gb|ACK49436.1| RNA binding S1 domain protein [Methylocella silvestris BL2]
          Length = 769

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V +FGAFV     +DGLVH+SQL+   V   ++VVK G  V V++L+ 
Sbjct: 649 KPGMVLEGTVTNVANFGAFVDIGVHQDGLVHVSQLADRFVKDPAEVVKAGAVVKVRVLEV 708

Query: 678 D-DRGKIKLSMKVVD 691
           D  R +I LSM+  D
Sbjct: 709 DLKRKRIALSMRKED 723


>gi|322491083|emb|CBZ26348.1| putative exosome-associated protein 4 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 221

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 18/228 (7%)

Query: 312 VRMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            R DGR+    VR I     +L   H S+    G T+ +     G R  +Q V    GT 
Sbjct: 2   KRADGRESPGAVRAIHVATNVLANCHSSACVEIGKTRVLC----GVRPPQQLVQEYRGT- 56

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR-IVSEI 429
           R       +    +   +S +     R++    LA   +        + P  L  ++ E+
Sbjct: 57  RGRVSCQVH---RSLESLSNLDNSGDRDM---ALALEGVAEQAVVLERIPQLLVGVLIEV 110

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED--HLG 487
              DG+   A      +AL   GV +    +  +  +  DG    I+ D++ +E    L 
Sbjct: 111 VHDDGAVWDAATTALCVALTAGGVEVYDTFSACSAAVRHDG---AIIVDVTQEEAATALA 167

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
            +      +  G+            + + +V A  +  + R   L E 
Sbjct: 168 SVVLCSGLSLGGVYYCCHKGACEATTMSQLVQAATKGLQVRKVPLLEQ 215


>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           Y.N.15.51]
 gi|259645406|sp|C3NHC2|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
 gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
          Length = 275

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 39/269 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  K     + +K  R DGR     R +S  +   ++  GS+L   G T  +    L   
Sbjct: 13  LIKKESIVSLFEKGTRQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKL--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
            D+ Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 71  IDKPYEDT---PNQGNLIVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLRDSKALDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    S  AL +  V                
Sbjct: 127 TKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNE 186

Query: 454 -----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                P++ PV  +++  V   D ++I+ D   DE+ +       + T            
Sbjct: 187 VVGKLPLNHPVVTVSIAKV---DKYLIV-DPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +S   +  A   A+   + +L E+ K
Sbjct: 243 KGSMSLQDIDQAENTARLVAVKLLEELKK 271



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 46/248 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL +     A+++DG+ L   G T+VLA      D+  +D  +   L VN +    A  
Sbjct: 38  RPLSITLN-YAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVM----QHDLE 123
               G       P EN I ++R++DRS+R       +K      + +  V       D  
Sbjct: 97  TFEPGP------PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYG 150

Query: 124 SSPHVVSMVAASAALM---------------------LSGLPFEGPVVGAQVDYINGQYV 162
            +      +A+ AAL                      +  LP   PVV   +  ++   +
Sbjct: 151 GNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLI 210

Query: 163 LNPRLDEDQGSLD--LFVSGTQD-AVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++P LDE +  +D  +  S T D  ++ ++      +S   +  A           ++ +
Sbjct: 211 VDPDLDE-ESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVA---VKLL 266

Query: 219 SKLAKMCA 226
            +L K   
Sbjct: 267 EELKKQLG 274


>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           L.S.2.15]
 gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           Y.G.57.14]
 gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.16.4]
 gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
 gi|259645403|sp|C4KHE3|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
 gi|259645404|sp|C3MQ47|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
 gi|259645407|sp|C3NED0|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
 gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
 gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
 gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
 gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
          Length = 275

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 39/269 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  K     + +K  R DGR     R +S  +   ++  GS+L   G T  +    L   
Sbjct: 13  LIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKL--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
            D+ Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 71  IDKPYEDT---PNQGNLIVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLRDSKALDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    S  AL +  V                
Sbjct: 127 TKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNE 186

Query: 454 -----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                P++ PV  +++  V   D ++I+ D   DE+ +       + T            
Sbjct: 187 VVGKLPLNHPVVTVSIAKV---DKYLIV-DPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +S   +  A   A+   + +L E+ K
Sbjct: 243 KGSMSLQDIDQAENTARLVAVKLLEELKK 271



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 46/248 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL + T   A+++DG+ L   G T+VLA      D+  +D  +   L VN +    A  
Sbjct: 38  RPLSI-TLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVM----QHDLE 123
               G       P EN I ++R++DRS+R       +K      + +  V       D  
Sbjct: 97  TFEPGP------PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYG 150

Query: 124 SSPHVVSMVAASAALM---------------------LSGLPFEGPVVGAQVDYINGQYV 162
            +      +A+ AAL                      +  LP   PVV   +  ++   +
Sbjct: 151 GNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLI 210

Query: 163 LNPRLDEDQGSLD--LFVSGTQD-AVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++P LDE +  +D  +  S T D  ++ ++      +S   +  A           ++ +
Sbjct: 211 VDPDLDE-ESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVA---VKLL 266

Query: 219 SKLAKMCA 226
            +L K   
Sbjct: 267 EELKKQLG 274


>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
 gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
          Length = 258

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 100/269 (37%), Gaps = 34/269 (12%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            SV  +I+   +  +++  + R+DGR  +  R+IS +  ++++  GS+L   G +Q +V 
Sbjct: 2   SSVISEIKKDFIYNLLIKGE-RIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVG 60

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--- 408
           V +   E  Q         R   + +   +P A+      G P+   I   RL  R    
Sbjct: 61  VKMQPGEPFQ-----DSPNRGVIITNAELVPLASPSFEP-GPPNEVGIELARLVDRGVRE 114

Query: 409 -----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM-------------D 450
                +  +  +  +  + + I   I +  G+   A   G+  AL+             D
Sbjct: 115 SKAVDLEALCIEPGKKVWIVFIDVHILDDCGNILDAASLGAISALLCTKVPASRFGLGED 174

Query: 451 AGVPISK-PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
             +PI   P+A  A+         +++ D   +E+ + +    V  T +G          
Sbjct: 175 YILPIRDIPIATTAIEFSD-----VLMFDPGVEEEAIANTKLTVITTTNGDICGMQKSGT 229

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKV 538
           G ++   +   +  A      I  +  + 
Sbjct: 230 GMLNPEQVYRIIDIACEKAKEIREKFLEA 258


>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
           intestinalis]
          Length = 235

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 19/150 (12%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT---REDEQYVDSLSGTQRNDFMMHYNFL 381
              ++  L+   GS+ + +G+T  + V   G    +E +Q +D          ++  +F 
Sbjct: 19  FQCEMNALKNADGSAFYSQGETSVM-VAVYGPGDLKETKQEID--------KALVEVDFR 69

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P       ++G+P+  E    R  +      +           I+ +I +  GS     +
Sbjct: 70  P-------KLGSPTVNEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAI 122

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
               +AL DAGV +      + + L K+ +
Sbjct: 123 NAVCVALQDAGVSMKHLPVAVTVALRKESE 152



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 31/214 (14%)

Query: 25  RQSDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + +DG+   + GET V+  V      +  K   D   + V+++ +               
Sbjct: 27  KNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDFRPKL-------------- 72

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
             PT NE  + R +               T   I V     + S    ++ A   AL  +
Sbjct: 73  GSPTVNEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDA 132

Query: 142 GLPFEGPVVGAQVDYI----------NGQYVLNPRLDEDQGSLDL---FVSGTQDAVLMV 188
           G+  +   V   V                 ++NP + E+  S  +           +L +
Sbjct: 133 GVSMKHLPVAVTVALRKESESELEDATDVLIINPTIKEESESFSILTFVFDSVNKNLLCM 192

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKLA 222
             +   L +      +       + V++      
Sbjct: 193 HSQGPLLPKQH-ERCLKAAKEATEEVLKFFRDSV 225


>gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
 gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
          Length = 275

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 97/269 (36%), Gaps = 39/269 (14%)

Query: 298 IQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           +  K     + +K  R DGR     R +S  +   ++  GS+L   G T  +    L   
Sbjct: 13  LIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKL--E 70

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------- 410
            D+ Y D+     + + +++   LP A  E    G P    I   R+  R++        
Sbjct: 71  IDKPYEDT---PNQGNLIVNVELLPLAY-ETFEPGPPDENAIELARVVDRSLRDSKALDL 126

Query: 411 -PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV---------------- 453
             ++ +  +  +T+ +   + +  G+   A    S  AL +  V                
Sbjct: 127 TKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNE 186

Query: 454 -----PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                P++ PV  +++  +   D ++I+ D   DE+ +       + T            
Sbjct: 187 VVGKLPLNHPVVTVSIAKI---DKYLIV-DPDLDEESIMDTKVSFSYTPDLKIVGIQKSG 242

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSK 537
            G +S   +  A   A+   + +L E+ K
Sbjct: 243 KGSMSLQDIDQAENTARLVAVKLLEELKK 271



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 46/248 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RPL + T   A+++DG+ L   G T+VLA      D+  +D  +   L VN +    A  
Sbjct: 38  RPLSI-TLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYE 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVM----QHDLE 123
               G       P EN I ++R++DRS+R       +K      + +  V       D  
Sbjct: 97  TFEPGP------PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYG 150

Query: 124 SSPHVVSMVAASAALM---------------------LSGLPFEGPVVGAQVDYINGQYV 162
            +      +A+ AAL                      +  LP   PVV   +  I+   +
Sbjct: 151 GNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKIDKYLI 210

Query: 163 LNPRLDEDQGSLD--LFVSGTQD-AVLMVELEA-NQLSEDVVLDAIIFGHNECKPVIEAI 218
           ++P LDE +  +D  +  S T D  ++ ++      +S   +  A           ++ +
Sbjct: 211 VDPDLDE-ESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVA---VKLL 266

Query: 219 SKLAKMCA 226
            +L K   
Sbjct: 267 EELKKQLG 274


>gi|282900723|ref|ZP_06308665.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
 gi|281194523|gb|EFA69478.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
          Length = 299

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           + + +++  G+V  +  FG FV        L+HI Q+S +       V + G  +   ++
Sbjct: 195 LLQTDQLVTGKVTGIKPFGVFVDL-DGVSALLHIKQVSQKFTESLEKVFQIGQEIKGIVI 253

Query: 676 DFDD-RGKIKLSMKVVDQNTGK 696
           D D+ +G++ +S + ++   G+
Sbjct: 254 DIDESKGRVAISTRKLENYPGE 275



 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +   +  +S S+ +   A E            +I +G+V ++   GA+V   G     + 
Sbjct: 6   ESSQIATSSFSMDDFAKALEKHDYQFQK---GQIVRGKVFQLDHDGAYVDIGGKSSAFLP 62

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             + S   V   S+++   + +   ++ + D  G++ +S + ++
Sbjct: 63  RDEASLRTVTDLSEILPLNEEMEFLIIREQDAEGQVTISRRQLE 106


>gi|260913803|ref|ZP_05920278.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
          ATCC 43325]
 gi|260632116|gb|EEX50292.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
          ATCC 43325]
          Length = 48

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 2  FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDR 48
           +    + ++    + LETG IARQ+  AV+A+  +T V  TVV  +
Sbjct: 1  MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKK 47


>gi|255524050|ref|ZP_05391012.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296186906|ref|ZP_06855307.1| S1 RNA binding domain protein [Clostridium carboxidivorans P7]
 gi|255512337|gb|EET88615.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
 gi|296048620|gb|EFG88053.1| S1 RNA binding domain protein [Clostridium carboxidivorans P7]
          Length = 135

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I +G VV +  FGAFV     + GLVHIS++S   V    D +KE D V VK+
Sbjct: 1   MTLKAGSILEGTVVNITSFGAFVEI-DGKTGLVHISEVSDTYVKNIRDYLKEKDKVKVKV 59

Query: 675 LDFDDRGKIKLSMKVVDQN 693
           +  D+ GKI LS+K     
Sbjct: 60  ISVDENGKISLSIKQATPE 78


>gi|169836494|ref|ZP_02869682.1| LytB protein [candidate division TM7 single-cell isolate TM7a]
          Length = 413

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +    + +  + +K YKG+V+ V D+G FV      +  +H ++ S ++        K G
Sbjct: 228 DKWDVLEETYDFDKSYKGKVMNVQDYGIFVELEKGIEVFIHKNEFSWDKREHKE--YKVG 285

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           D V  K++  D    K+  S+K ++++  K +
Sbjct: 286 DEVEFKVIVIDKIEKKLSGSIKQLEKSPWKEV 317



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
              ++ +   +  I +  + +V DFG  +      DGL+H+S LS +R +  +   K GD
Sbjct: 143 PWNTVKEKYHIGDIIEKPITEVFDFGLLISLEKDIDGLLHVSDLSYKRESNLTSKYKAGD 202

Query: 669 TVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
            +  K++DF D++ ++ LS+K +  +  
Sbjct: 203 LIKFKIVDFNDEKNRVTLSVKALLDDKW 230



 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            GA  G VHIS++S ++V    +  K GD V  K+++ D ++ ++KLS+K + ++  
Sbjct: 3   LGAASGFVHISEVSWDQVDNLHERYKIGDEVTAKIIEKDVEKNRLKLSIKQLSEDPW 59



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +   + +T+  +   I   ++V++ +  A V      +G+V   +L+ + +   S+    
Sbjct: 311 KSPWKEVTEKYKKGNIVNTEIVEIQENFALVKLTDRFNGIVPKRELTEDFLKDISEKFSV 370

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           GD V   + D +++ K I LS+K V +   K
Sbjct: 371 GDKVEAVITDINEKRKSIALSLKKVQEMEEK 401



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 13/137 (9%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            D +     +G +V   I+E+   K        +K++   L+E     +   +  +   V
Sbjct: 20  VDNLHERYKIGDEVTAKIIEKDVEK------NRLKLSIKQLSE-----DPWIAFENSHNV 68

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-D 678
             + +  V  V+DFG  V   G   G VH+S+L+    +K     K GD    K++   +
Sbjct: 69  GDVVEAVVKDVLDFGIVVTVDGN-SGFVHVSELAWHNGSKELKNYKAGDKFSAKIIQIEN 127

Query: 679 DRGKIKLSMKVVDQNTG 695
           ++  +KLS+K + +N  
Sbjct: 128 EKKNVKLSVKQLSENPW 144


>gi|315444366|ref|YP_004077245.1| transcriptional accessory protein [Mycobacterium sp. Spyr1]
 gi|315262669|gb|ADT99410.1| transcriptional accessory protein [Mycobacterium sp. Spyr1]
          Length = 787

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TV 670
                 +   I +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G    
Sbjct: 657 EKVADLKAGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYVSDPHEVVRSGQVVR 716

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
              +    +R +I LSM++ D+ T +
Sbjct: 717 VKVVDVDVERQRIGLSMRLNDETTPQ 742


>gi|325286632|ref|YP_004262422.1| Tex-like protein [Cellulophaga lytica DSM 7489]
 gi|324322086|gb|ADY29551.1| Tex-like protein [Cellulophaga lytica DSM 7489]
          Length = 707

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDD 589
           I+ +++K       +L      ++ + +       V   G   ++ IV++     ++I +
Sbjct: 559 IVQQITKDAKVPIEELIGNKEVLQKIDLQKYCTDTV---GLPTLQDIVKELEKPGLDIRE 615

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
              V   +          + IRSITD+    ++  G V  + +FG FV       GL+HI
Sbjct: 616 KAKVFSFN----------QNIRSITDLVAG-QLLPGIVNNITNFGCFVDVGIKESGLIHI 664

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           S L+   V   ++ V     + VK+L+ D  R +I+L++
Sbjct: 665 SNLADTFVKDVNEHVSLHQQIVVKVLEVDVARKRIQLAL 703


>gi|149278329|ref|ZP_01884467.1| S1 RNA-binding domain protein [Pedobacter sp. BAL39]
 gi|149231095|gb|EDM36476.1| S1 RNA-binding domain protein [Pedobacter sp. BAL39]
          Length = 782

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV     +DGLVH SQL+   VA  +DVVK    V V +++ D  R +I
Sbjct: 642 GIVTNITNFGAFVDIGVHQDGLVHTSQLADRFVANPNDVVKVHQKVEVTVVEVDVARKRI 701

Query: 684 KLSMKV 689
            LSMK 
Sbjct: 702 SLSMKT 707


>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
          Length = 257

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 37/253 (14%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LGTREDEQYVD 364
           ++    R DGR     RDIS +  +++R  GS+    GDT+ +V V   LGT     + D
Sbjct: 17  LVRNGKREDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP----FPD 72

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQT 416
           +     +   + +   +P A+ +    G P+   I   R+  R I          +  + 
Sbjct: 73  T---PDKGVIITNAELVPLASPKFES-GPPNENSIQLARVVDRGIRGSETIDLDKLCIEE 128

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV-------------PISK-PVAGI 462
            +  + + I   + + +G+   A   G+  +L++  +             P+   PVA  
Sbjct: 129 GEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAVT 188

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            +       +  IL D S DE +       V     G  +       GG+ E  +   ++
Sbjct: 189 TV-----EIEGNILVDPSFDEGNAAASSVTVISNADGALSGMQKSGSGGLKEAQIAEMVE 243

Query: 523 QAKRGRLHILNEM 535
                   I  + 
Sbjct: 244 IGIEKAGEIRKKY 256



 Score = 41.1 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 84/227 (37%), Gaps = 33/227 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +E   I ++++G+     G+T VL  V       +    FP T +          +
Sbjct: 33  RDISVERDVI-KRAEGSARVKIGDTEVLVGV-----KVELGTPFPDTPDKGVIITNAELV 86

Query: 74  PGGYLRRESR-PTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQHDL 122
           P    + ES  P EN I ++R++DR IR        K    E        + I+V+  D 
Sbjct: 87  PLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVFIDIHVLD-DN 145

Query: 123 ESSPHVVSMVAASAALML------------SGLPFEGPVVGAQVDYINGQYVLNPRLDE- 169
            +     ++ A ++ L L            + LP     V      I G  +++P  DE 
Sbjct: 146 GNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAVTTVEIEGNILVDPSFDEG 205

Query: 170 -DQGSLDLFVSGTQDAVLMVE-LEANQLSEDVVLDAIIFGHNECKPV 214
               S    +S    A+  ++   +  L E  + + +  G  +   +
Sbjct: 206 NAAASSVTVISNADGALSGMQKSGSGGLKEAQIAEMVEIGIEKAGEI 252


>gi|145224029|ref|YP_001134707.1| RNA-binding S1 domain-containing protein [Mycobacterium gilvum
           PYR-GCK]
 gi|145216515|gb|ABP45919.1| RNA binding S1 domain protein [Mycobacterium gilvum PYR-GCK]
          Length = 787

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TV 670
                 +   I +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G    
Sbjct: 657 EKVADLKAGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYVSDPHEVVRSGQVVR 716

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
              +    +R +I LSM++ D+ T +
Sbjct: 717 VKVVDVDVERQRIGLSMRLNDETTPQ 742


>gi|240282264|gb|EER45767.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus H143]
          Length = 1781

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGL 646
            D  + K+  S    +              +  +   G+V  V +FGAF+   G     GL
Sbjct: 1285 DPESNKLQMSLKQSVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1344

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV------VDQNTGKPI 698
             H ++++  +V     + ++GD V  K++  D ++ +I L +K        D++ G+ +
Sbjct: 1345 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENV 1403



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   S     +VN I +G V +V D G FV         V IS LS   + +  +  + 
Sbjct: 1214 QDPEISSISQIKVNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQV 1273

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  +++  D +  K+++S+K  V+D N   PI
Sbjct: 1274 NQLVRGRVILADPESNKLQMSLKQSVLDPNYKTPI 1308



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G ++ +   GA V F G   G + +S++S   +   +     G  V V  L+ D
Sbjct: 650 GTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVD 703



 Score = 45.3 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--SITDVPEVNKIYKG 625
           G     IR   +     +         I  ++   ++ AR+     +  +  E      G
Sbjct: 775 GAALARIRVGQKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTG 834

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIK 684
            V  ++  G FV F G   G V    +  + V K S        + + +    DDR +  
Sbjct: 835 FVKNIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFI 894

Query: 685 LSMKVVDQNTGK 696
           L++K  + +TGK
Sbjct: 895 LTLK--EPHTGK 904


>gi|50546573|ref|XP_500756.1| YALI0B11352p [Yarrowia lipolytica]
 gi|49646622|emb|CAG83003.1| YALI0B11352p [Yarrowia lipolytica]
          Length = 1111

 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            P +NK+YKG+V  +  FGAFV   G     DGLVH+S L+  RV   SDVV  GD V+V
Sbjct: 160 EPIINKVYKGRVKNLTSFGAFVTLSGLKNKTDGLVHVSVLAANRVDHPSDVVSVGDVVYV 219

Query: 673 KLLDFDDRGKIKLSMKVVDQNTGK 696
           K+   D R KI LS+  VDQ TG+
Sbjct: 220 KVCKIDGR-KIGLSLNDVDQQTGQ 242


>gi|134046725|ref|YP_001098210.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis C5]
 gi|132664350|gb|ABO35996.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Methanococcus maripaludis C5]
          Length = 265

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  K+
Sbjct: 6   PEEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKV 65

Query: 675 LDFDD-RGKIKLSMK-VVDQN 693
           +     + +I LS+K   DQ 
Sbjct: 66  MRVTPHKNQIDLSLKRATDQQ 86


>gi|154151491|ref|YP_001405109.1| translation initiation factor IF-2 subunit alpha [Candidatus
           Methanoregula boonei 6A8]
 gi|154000043|gb|ABS56466.1| translation initiation factor 2, alpha subunit [Methanoregula
           boonei 6A8]
          Length = 263

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+  ++    V  V DF AFV       R GL+ IS+++T  +    D ++EG  +  K+
Sbjct: 7   PQEAELVVCTVENVKDFVAFVSLDEYNGRQGLIPISEIATGWIKYIRDHIREGQKIVCKV 66

Query: 675 LDFDD-RGKIKLSMKVVDQNTGKP 697
           L+ D  RG I LS+K V+ +  + 
Sbjct: 67  LNVDRTRGHIDLSLKDVNDHQRRE 90


>gi|326923909|ref|XP_003208175.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Meleagris
            gallopavo]
          Length = 2041

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIY-KGQVVKVMDFGAFVHFCGARDGLV 647
            D G   I     A I A +E     +       +   G V KVM FG FV F     GL 
Sbjct: 906  DKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGVLLTGYVRKVMPFGVFVEFPFGVTGLA 965

Query: 648  HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
                +S + V  T D    G TV  K++  D ++ ++ L++KV + ++G
Sbjct: 966  PKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLNLKVSECSSG 1014



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAE----------IEA 605
           M +        +     +   I++Q   K N+ D+   ++   +  E          +  
Sbjct: 674 MQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRCRVLECNPEEKKLFLTLKKTLVQ 733

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           ++  + S  +  E   I  G VV   +FG  V F     GLV  ++LS+E ++    V  
Sbjct: 734 SKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFH 793

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           +G  V V +L  +  + ++ LS ++    + KP+
Sbjct: 794 DGQVVKVMVLKCEPQQERLLLSFRL----SSKPV 823



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 618  EVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E   I  G V K++   G  +   G + G V I  LS +         K G  V   +L 
Sbjct: 1429 EPGTITVGMVAKMIPHIGLTITLPGGKTGKVSIFHLSDKYTESPLSDFKIGKVVRCYILS 1488

Query: 677  FDDRGKIKLSMKV 689
             ++ GKI+LS++ 
Sbjct: 1489 -NENGKIQLSLRQ 1500



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
               S   +I  AR +            + +G+V+ +   G  V       GLV    L+
Sbjct: 636 MCIVSLKHQIIEARFLRYQDIHT---GDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLA 692

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
              + +       GD V  ++L+ + +  K+ L++K     +  P++
Sbjct: 693 DVILKQPEKKYNVGDEVRCRVLECNPEEKKLFLTLKKTLVQSKLPVL 739


>gi|307103595|gb|EFN51854.1| hypothetical protein CHLNCDRAFT_139746 [Chlorella variabilis]
          Length = 290

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            EV  +  G V ++  FG FV     R  GL+HIS +S + +     V + G+ V   ++
Sbjct: 170 QEVGTLVTGSVRRIEPFGVFVGINNTRVSGLLHISNVSRQHIETVQGVFEVGEEVKCLVM 229

Query: 676 DFDDR-GKIKLSMKVVDQNTG 695
             D     I LS+  ++   G
Sbjct: 230 GLDPGYTNISLSIAELELEEG 250


>gi|302871872|ref|YP_003840508.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574731|gb|ADL42522.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 663

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G   K +  I E+   K+   D    +I  S     +   +          +  +   +V
Sbjct: 513 GADLKKLFEIGEKVKVKILDIDKNKKQIYLSIKKTQD---DEWAKRIKNLYLGMLVDCEV 569

Query: 628 VKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
            KV+ FG  V       DG VHIS +      +  +V K GD++  K+++ D ++ ++ L
Sbjct: 570 TKVLSFGLVVWITEHDVDGFVHISNIPLGYNQRPHNVYKVGDSLKAKVIEIDEEKRRVAL 629

Query: 686 SMKVVDQNT 694
           S+K + +  
Sbjct: 630 SLKDLHEEE 638



 Score = 40.7 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKL 674
             +  ++ KG+++KV +    V      +G+++  ++         D+ K G+T+  V +
Sbjct: 301 TVQRGEVVKGRIIKVEEDYVLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGETIEAVVI 360

Query: 675 LDFDDRGKIKLS 686
            + D+ G + LS
Sbjct: 361 KESDEEGNVVLS 372


>gi|209522969|ref|ZP_03271526.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
 gi|209496556|gb|EDZ96854.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
          Length = 294

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V  +  FG F+   G   GL+HI ++S + V    D+   G TV   ++  
Sbjct: 191 QVGQLVEGTVGSIKPFGVFIELEG-VTGLIHIKEVSQKYVGSLPDIFTIGQTVKALVISL 249

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           ++ R ++ LS ++++   G+
Sbjct: 250 EEGRQRVSLSTRLLENYPGE 269


>gi|325088403|gb|EGC41713.1| ribosomal RNA processing protein RRP5 [Ajellomyces capsulatus H88]
          Length = 1817

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +  +   G+V  V +FGAF+   G     GL H ++++  +V     + ++GD V  K++
Sbjct: 1323 KRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIV 1382

Query: 676  DFD-DRGKIKLSMKV------VDQNTGKPI 698
              D ++ +I L +K        D++ G+ +
Sbjct: 1383 KIDLNKERISLGLKASYFKDSDDESDGENV 1412



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   S     +VN I +G V +V D G FV         V IS LS   + +  +  + 
Sbjct: 1223 QDPEISSISQIKVNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQV 1282

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  +++  D +  K+++S+K  V+D N   PI
Sbjct: 1283 NQLVRGRVILADPESNKLQMSLKQSVLDPNYKTPI 1317



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           G ++ +   GA V F G   G + +S++S   +   +     G  V V  L+ D
Sbjct: 659 GTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVD 712



 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--SITDVPEVNKIYKG 625
           G     IR   +     +         I  ++   ++ AR+     +  +  E      G
Sbjct: 784 GAALARIRVGQKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTG 843

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIK 684
            V  ++  G FV F G   G V    +  + V K S        + + +    DDR +  
Sbjct: 844 FVKNIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFI 903

Query: 685 LSMKVVDQNTGK 696
           L++K  + +TGK
Sbjct: 904 LTLK--EPHTGK 913


>gi|307108719|gb|EFN56958.1| hypothetical protein CHLNCDRAFT_143529 [Chlorella variabilis]
          Length = 349

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG-----QVV 628
           +R + ++ G  ++ D+   +                 R   + PE+  I++       V 
Sbjct: 102 MRAVSQEDGRDLDPDNALAMAGRGGPGGGGGPHGGGGRDSDEPPELYSIHRAGKLAYSVQ 161

Query: 629 KVMDFGAFVHFCGARD-GLVHISQLSTE-----------RVAKTSDVVKEGDTVWVKLLD 676
           +V  FG FV   G R  GLVH SQ+S             +V +  D++  GD V+VK++D
Sbjct: 162 QVRPFGVFVKLDGYRKYGLVHFSQISDHLSFSREDPDDVKVKEIGDILSIGDPVFVKVVD 221

Query: 677 F--DDRG-KIKLSMKVVDQNTGKPI 698
              D+RG KI  S+K V Q+ G  +
Sbjct: 222 ITADERGPKIGCSIKHVSQSDGTDL 246



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 18/113 (15%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTE------- 655
            AA          PEV  I+  +VV V  FGAFV   G  +  L+H +Q+S E       
Sbjct: 1   MAAGRRQGGADVPPEVGTIHHARVVSVRPFGAFVELPGYRKQALIHHTQVSDEIQFGREE 60

Query: 656 ----RVAKTSDVVKEGDTVWVKLLDFDDRG------KIKLSMKVVDQNTGKPI 698
               +V      +  G+  W+K+L+    G      K+  SM+ V Q  G+ +
Sbjct: 61  DDEMKVKAMEFFLPRGEQGWLKVLEVRQEGPGPQGIKLAASMRAVSQEDGRDL 113


>gi|149912349|ref|ZP_01900907.1| 30S ribosomal protein S1 [Moritella sp. PE36]
 gi|149804575|gb|EDM64648.1| 30S ribosomal protein S1 [Moritella sp. PE36]
          Length = 215

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--AKTSDV 663
           A       T   +  ++  G++  + DFG F+   G  DGLVH+S +S +        + 
Sbjct: 10  ANPWENFSTSRMKGEQV-TGKIKSITDFGIFIGLDGGIDGLVHLSDISWDSTGEEAVREY 68

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            K+GD +   +L  D +R +I L +K +D++ 
Sbjct: 69  -KKGDEITAVVLQVDPERERISLGIKQIDEDP 99



 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + N I  G V  V   GA +      +G + +  +S +R+   S V+  G+ +  K +  
Sbjct: 108 KKNAIVNGTVSSVDAKGATIELAKGVEGYIRVGDISRDRIEDASLVLSVGEKLEAKYVGV 167

Query: 678 DDRGK-IKLSMKVVDQNTGKP 697
           D + + I LS+K  D+   K 
Sbjct: 168 DRKNRVISLSIKAKDEADEKE 188


>gi|317471967|ref|ZP_07931299.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316900371|gb|EFV22353.1| S1 RNA binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 493

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 567 IGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--- 622
           IG      + + E+ G  ++ + D   VK       +           TDV E+  +   
Sbjct: 365 IGKKITDYQRLSEELGVGEITLRD--IVKELEKPGRDPREDMPKPILRTDVMEMEDLKEG 422

Query: 623 --YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              KG V  V+DFGAFV     +DGLVHISQ++   V    +VV  GD V V +L  D +
Sbjct: 423 MKLKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFVKHPLEVVSVGDVVDVTVLSVDLE 482

Query: 680 RGKIKLSMK 688
           + +I+LSM+
Sbjct: 483 KKRIQLSMR 491


>gi|45359270|ref|NP_988827.1| translation initiation factor IF-2 subunit alpha [Methanococcus
           maripaludis S2]
 gi|45048145|emb|CAF31263.1| translation initiation factor aIF-2, subunit alpha [Methanococcus
           maripaludis S2]
          Length = 265

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   I  G V+ V  FGAF+       ++G+VHIS++S+  +    D +K+G  V  K+
Sbjct: 6   PEEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKV 65

Query: 675 LDFDD-RGKIKLSMK-VVDQN 693
           +     + +I LS+K   DQ 
Sbjct: 66  MRVTPHKNQIDLSLKRATDQQ 86


>gi|296423848|ref|XP_002841464.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637704|emb|CAZ85655.1| unnamed protein product [Tuber melanosporum]
          Length = 1787

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 591  GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVH 648
            G V+++          +      + + E  +I KG+V  + ++G F+   G+++  GL H
Sbjct: 1296 GHVQMSLRESDISGKEKPKPADYSSLKEG-QIVKGKVKNIAEYGVFISVDGSQNISGLCH 1354

Query: 649  ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             SQ++   +   S +   GD V  K++  D ++ +I   +K
Sbjct: 1355 KSQIADSAIDDISKLYATGDPVKAKIISIDLEKKRISFGLK 1395



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +  A+V + D    K+  +    I  +   I S  +         G +VK++  GA V F
Sbjct: 607 EVKARVLLTDPSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSVGTLVKILPSGAVVKF 666

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKV 689
                G + IS++S   +    +    G +V V +L  D    K+++S + 
Sbjct: 667 FSDVCGFLPISEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKLRVSCRD 717



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG-AFVHFCGARDGLVHISQLSTERVAKT 660
             +   +      +  ++ ++ KG + +V+D G   V       G+V    LS  ++   
Sbjct: 539 MEQKVLDQPFLRVEDIKIGEVVKGTINRVLDSGRVIVSLAEGITGIVDELHLSDIKLKHP 598

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
               +EG  V  ++L  D  + K+ L++K    N+  PI+
Sbjct: 599 EKKFREGIEVKARVLLTDPSKRKVMLTLKKAIVNSDAPII 638



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++         +V  I +G V +V   G FV   G       IS LS   + +   +   
Sbjct: 1221 KDPEIQAIVNVKVGDIRRGFVKQVSPKGLFVTIGGNVTAWTKISDLSDGFLKEWEGLFTV 1280

Query: 667  GDTVWVKLLDFDDR-GKIKLSMKVVD 691
            G  V  K++  D   G +++S++  D
Sbjct: 1281 GQLVKGKIMAVDSTLGHVQMSLRESD 1306


>gi|195020230|ref|XP_001985151.1| GH16904 [Drosophila grimshawi]
 gi|193898633|gb|EDV97499.1| GH16904 [Drosophila grimshawi]
          Length = 331

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R    + G+L    GS+    G+T+ + +V       E    S           + NF  
Sbjct: 46  RSTFIRAGVLTTVRGSAYMEYGNTKMMAIV---APPRELVRSSAGRVNMGVLNCYVNFAA 102

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            A+GE++ +     RE   G +  +A+ P++ +     + L I   I + DG      + 
Sbjct: 103 FASGELASLPE---REKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAIN 159

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKD 469
              +AL++ G+     +A     + +D
Sbjct: 160 CCGVALVECGISTYDLIAASTACIYRD 186



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 18/150 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKD----GQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T ++A V   R L        +   L        +A G++           
Sbjct: 60  GSAYMEYGNTKMMAIVAPPRELVRSSAGRVNMGVLNCYVNFAAFASGELASL-------- 111

Query: 85  TENEILISRMIDRSIRPLFSKCYKNET---QVIINVMQHDLESSPHVVSMVAASAALMLS 141
            E E  +  M+ +++ PL     +NE    Q+ I V+  D +      ++     AL+  
Sbjct: 112 PEREKHLGSMLTKALEPLV---CRNEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVEC 168

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           G+     +  +       Q  LNP    ++
Sbjct: 169 GISTYDLIAASTACIYRDQVFLNPSAKVEE 198


>gi|327404340|ref|YP_004345178.1| Tex-like protein [Fluviicola taffensis DSM 16823]
 gi|327319848|gb|AEA44340.1| Tex-like protein [Fluviicola taffensis DSM 16823]
          Length = 703

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 75/193 (38%), Gaps = 16/193 (8%)

Query: 507 MKIGGI-SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQ--- 562
            + GGI S   +    +   +        +     E+ L      P          +   
Sbjct: 509 TENGGIKSREELKKVKRLGDKAYEQAAGFLRVRDGENPLDNSSVHPESYKFVKQVAKKLG 568

Query: 563 --IRNVIGMGGKVIRGIVEQTGAKVN-------IDDDGTVKIASSSLAEIEAAREMIRSI 613
             ++++IG     +  +     ++++       I +           A++      IR+I
Sbjct: 569 IELKDLIG-NETKLNEVKHADFSEIDSFTFTDIIKELKKPGRDPRKKAQVLEFDSRIRTI 627

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +D+ E   I  G V  V +FGAFV+     +GL+H SQL+   V   +  +   + V V+
Sbjct: 628 SDLKEG-MILTGIVTNVTNFGAFVNIGIKENGLIHKSQLADVYVEDPTQFISLHEHVEVR 686

Query: 674 LLDFDD-RGKIKL 685
           +++ D+ R ++ L
Sbjct: 687 VMEIDEARKRVGL 699


>gi|7106892|gb|AAF36171.1|AF151085_1 HSPC251 [Homo sapiens]
          Length = 212

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 20  MSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 69


>gi|307200434|gb|EFN80643.1| Exosome complex exonuclease MTR3 [Harpegnathos saltator]
          Length = 215

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSG-TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH 401
            G+T+ I  V    RE    V + +G   + +    + F P +  +  +M      E  +
Sbjct: 1   MGNTKVICSV-FDPRE----VPNKTGYCVQGELYCEFKFAPFSYRKR-KMHQQDAEEKEY 54

Query: 402 GRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG 461
             + +RA+ P +  +    + + I + + ++ GS+  A +  +SLAL DAGVP+   V  
Sbjct: 55  SLVLQRALEPAVCLSEFPNFQVDIYATVLDNGGSALAAAIMAASLALADAGVPMYSLVTA 114

Query: 462 IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
             +G+    D+  ++     +E          A  D GI    +  +   ISE
Sbjct: 115 STIGVY---DNTYLVDPTDEEESFCCSKTVLDANPDHGIIVQAILSQHNQISE 164



 Score = 49.1 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 29/222 (13%)

Query: 35  YGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE-NEILISR 93
            G T V+ +V   R + +   +      Y E  +A    P  Y +R+    +  E   S 
Sbjct: 1   MGNTKVICSVFDPREVPNKTGYCVQGELYCEFKFA----PFSYRKRKMHQQDAEEKEYSL 56

Query: 94  MIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           ++ R++ P    S+    +  +   V+  D   S    +++AAS AL  +G+P    V  
Sbjct: 57  VLQRALEPAVCLSEFPNFQVDIYATVL--DNGGSALAAAIMAASLALADAGVPMYSLVTA 114

Query: 152 AQVDYINGQYVLNPRLDED-----QGSLDLFVSGTQDAVLM--VELEANQLSE------- 197
           + +   +  Y+++P  +E+     +  LD   +     +++  +  + NQ+SE       
Sbjct: 115 STIGVYDNTYLVDPTDEEESFCCSKTVLD---ANPDHGIIVQAILSQHNQISEMFVVGSF 171

Query: 198 --DVVLDAIIFGHNECKPVIEAISK-LAKMCAKEPIVIDSKD 236
             D ++ ++       K +   + K L K   K    I  +D
Sbjct: 172 NTDTIIHSMDLLSTAHKDICPLLEKCLVKTIFKTFKPIAQRD 213


>gi|253581079|ref|ZP_04858339.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847615|gb|EES75585.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 302

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +ID +    I S+     E A E  ++     +V  + +G V  +  +GAFV       G
Sbjct: 162 DIDKEKGRLILSAKEILREKAEEERKTKISNVQVGLVTEGVVESLQPYGAFVDLGNGLSG 221

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           LVHISQ+  +R+ K S+V+  GD V VK+    D GK+ LS+K       K I
Sbjct: 222 LVHISQICEKRIKKPSEVLTVGDKVKVKVTAVKD-GKLSLSIKEATDMMAKEI 273



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               ++     + +     E   I  G V+ V +    V      +G++     S E   
Sbjct: 1   MAESMKDYETELEASFKKIEEGDILTGTVISVDEKEVVVDLKYYAEGIIPAEDYSREPGF 60

Query: 659 KTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              + V  GD V   ++  DD  G I LS 
Sbjct: 61  SLKEQVNVGDEVSATVVRKDDGNGNILLSR 90


>gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum
           DSM 1728]
 gi|29336948|sp|Q9HIP1|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2
          Length = 260

 Score = 65.3 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 97/263 (36%), Gaps = 23/263 (8%)

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E   +  +I+   + + M     R+DGR  +  R+++     + R +GS+    G+T+ 
Sbjct: 3   KESAEILSEIRKNYILSTM-KGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRV 61

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  V +   E   + D+     +     +   LP A       G P+   I   R+  R 
Sbjct: 62  VAGVKIEAGEP--FPDT---PDQGVLTTNVELLPIAFPSFEA-GPPNDLAIEVSRVVDRG 115

Query: 409 I--------HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP------ 454
           I          ++ +  +  + + +   + + DG+   A+   +  AL +A VP      
Sbjct: 116 IRESKMISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGG 175

Query: 455 --ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
                PV+   + +        ++ D S +ED +      V  T+ G        +IG  
Sbjct: 176 EDFKLPVSSTPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQKGEIGAF 235

Query: 513 SENIMVMALQQAKRGRLHILNEM 535
           +   +  A++ +      +  + 
Sbjct: 236 TVEDVKKAVKMSLEVGKKLREKY 258



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 36/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R L +    I R ++G+     G T V+A V         D  D   LT N +    A  
Sbjct: 36  RELTIIENYIPR-ANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFP 94

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNE-------TQVIINVMQHD 121
               G       P +  I +SR++DR IR    +  +    E         + INV+ +D
Sbjct: 95  SFEAGP------PNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVLDYD 148

Query: 122 LESSPHVVSMVAASAALMLSGLP--------FEGPVV----GAQVDYINGQYVLNPRLDE 169
             +     S +AA AAL  + +P        F+ PV        +  I    V +P L+E
Sbjct: 149 G-NLID-ASTIAAVAALRNAVVPASKEGGEDFKLPVSSTPISVTMVKIGDTLVCDPSLEE 206

Query: 170 DQ-GSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
           DQ     + V+ T+D  +  M + E    + + V  A+       K +
Sbjct: 207 DQICGGRITVTTTEDGHIRAMQKGEIGAFTVEDVKKAVKMSLEVGKKL 254


>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
           exoribonucleases (ISS) [Ostreococcus tauri]
 gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
           exoribonucleases (ISS) [Ostreococcus tauri]
          Length = 378

 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 22/241 (9%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            +R DGR  E +R        +    GS+ +    T  +V    G               
Sbjct: 127 SLRPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGT-IVVAAVHGPLR---IAPWREAHD 182

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R    +  +           M    +R    GRL R AI   +       + LRI + + 
Sbjct: 183 RGVIDVELSAPGW-------MSRDDQRACE-GRL-RGAIERCVELRDFPRFGLRISARVV 233

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
             DG++  A V     AL+DA VP+   +   A  L ++G    ++ D +  E+      
Sbjct: 234 SDDGNAEAACVNAVCCALIDANVPMRGLICANACALTREGS---MVIDPTKREETEARAV 290

Query: 491 FKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            +             A+      G ++E   + A+         ++N   K +  +R ++
Sbjct: 291 VRACALSKHREKDEIAIVGCSTTGALTEKEYLDAIAFIVDATAAVVNIQKKSI--ARYEV 348

Query: 547 G 547
            
Sbjct: 349 H 349



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 25/208 (12%)

Query: 27  SDGAVLATYGETVVLATVVYD---RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR 83
           + G+       T+V+A V         ++  D   + V            PG   R + R
Sbjct: 151 ASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVIDVEL--------SAPGWMSRDDQR 202

Query: 84  PTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
             E  +  +  I+R +        +   ++   V+  D         + A   AL+ + +
Sbjct: 203 ACEGRLRGA--IERCVE--LRDFPRFGLRISARVVSDDGN--AEAACVNAVCCALIDANV 256

Query: 144 PFEGPVVGAQVDYI-NGQYVLNPRLDEDQGSLDLFVSGT------QDAVLMVELEAN-QL 195
           P  G +          G  V++P   E+  +  +  +        +D + +V       L
Sbjct: 257 PMRGLICANACALTREGSMVIDPTKREETEARAVVRACALSKHREKDEIAIVGCSTTGAL 316

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAK 223
           +E   LDAI F  +    V+    K   
Sbjct: 317 TEKEYLDAIAFIVDATAAVVNIQKKSIA 344


>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
           SCM1]
 gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
          Length = 272

 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 35/272 (12%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V ++++   +  ++ ++  R+DGR  +  R++S +   + + +GS+    GDT+ +  V 
Sbjct: 6   VIDELKRNQILELL-EQGKRVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVK 64

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCA--TGEVSRMGAPSRREIGHGRLARRAIHP 411
           +    D  + D+     +  F+     LP +  T E    G      I   R+  R I  
Sbjct: 65  IQP--DRPFPDT---GDKGLFICTAELLPLSHPTVETGPPGPE---VIELARVVDRGIRE 116

Query: 412 VLPQT------AQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVP--------- 454
                       +    + + ++  + + DG+   A    ++ AL+ +  P         
Sbjct: 117 SHMIDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAP 176

Query: 455 -------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
                  +  P+  I + +        I+ D +GDE         +     G        
Sbjct: 177 ALVEGEEVDVPITTIPVSVTMGKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKG 236

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
              G +++ +V   + + R    I  ++    
Sbjct: 237 GDDGFTQDEIVQCGEISVRVGAKIREKLKAAQ 268



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 46/226 (20%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +ET  I + ++G+     G+T V+  V     ++  + F P T +          +
Sbjct: 34  REVSIETNAIPK-ANGSARVRLGDTEVVCGV----KIQPDRPF-PDTGDKGLFICTAELL 87

Query: 74  PGGYLRRESRPTENE-ILISRMIDRSIRPLFSKCYKNETQVIIN-------VMQHDLESS 125
           P  +   E+ P   E I ++R++DR IR        + +Q++I        V   ++   
Sbjct: 88  PLSHPTVETGPPGPEVIELARVVDRGIR---ESHMIDVSQLVIEKDKSVIGVFADNVVVD 144

Query: 126 PHV----VSMVAASAALMLS--------------------GLPFEGPVVGAQVDYINGQY 161
                      AA+AAL+ S                     +P     V   +  I    
Sbjct: 145 YDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIPVSVTMGKIGNHI 204

Query: 162 VLNPRLDEDQGSLDLFVSGTQDA---VLMVE-LEANQLSEDVVLDA 203
           +++P  DE   S+D  ++ T D+   +  ++    +  ++D ++  
Sbjct: 205 IVDPNGDEW-ASMDARITITSDSDGNICALQKGGDDGFTQDEIVQC 249


>gi|75907756|ref|YP_322052.1| RNA binding S1 [Anabaena variabilis ATCC 29413]
 gi|75701481|gb|ABA21157.1| RNA binding S1 [Anabaena variabilis ATCC 29413]
          Length = 719

 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I+ ITD+ E  ++ +G V  V +FGAFV     +DGLVHISQL+   V     VVK 
Sbjct: 634 KEGIKEITDLQEGMEL-EGIVTNVANFGAFVDIGVHQDGLVHISQLTDRFVDDPKKVVKV 692

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           G  V V++L+ + +  +I LSMK V Q
Sbjct: 693 GQVVKVRVLEVNAKLKRISLSMKAVKQ 719


>gi|302539288|ref|ZP_07291630.1| 30S ribosomal protein S1 [Streptomyces sp. C]
 gi|302448183|gb|EFL19999.1| 30S ribosomal protein S1 [Streptomyces sp. C]
          Length = 243

 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  ++  +   V +  +G+V K++ FG FV      +GLVH+ +L+   V     VV+ G
Sbjct: 152 DPFKTFAETTTVGQALQGRVTKLVPFGVFVQVTNDIEGLVHLQELTWTPVEAPEAVVQIG 211

Query: 668 DTVWVKLLDFD 678
           D + V + + D
Sbjct: 212 DEITVVVTEID 222



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 15/143 (10%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN------ 620
           +G  G +    V  + A   + D  T ++ +  L +  A   M  +              
Sbjct: 11  LGFVGSLDLSWVRFSAAAAEVGDRITAEVTAIDLEQGRAWMSMAATENPELWAFLKTLRA 70

Query: 621 -KIYKGQVVKVMDFGAFVHFCGARD-------GLVHISQLSTERVAKTSDVVKEGDTVWV 672
            +I  GQ+  +  FG FV      D       G + + +LS       SDVV+ G  V  
Sbjct: 71  GEILSGQIGSIERFGVFVALDDGPDHPVFPGVGFITVPELSWRHFETASDVVQVGQRVRC 130

Query: 673 KLLDFD-DRGKIKLSMKVVDQNT 694
           + L FD   G+ +LS++    + 
Sbjct: 131 EFLQFDTTNGEARLSLRATQPDP 153


>gi|225559332|gb|EEH07615.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus G186AR]
          Length = 1817

 Score = 64.9 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGL 646
            D  + K+  S    +              +  +   G+V  V +FGAF+   G     GL
Sbjct: 1294 DPESNKLQMSLKQSVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1353

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             H ++++  +V     + ++GD V  K++  D ++ +I L +K 
Sbjct: 1354 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKA 1397



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 5/146 (3%)

Query: 558  IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITD 615
            I      + I         I+      +++     +    SS     +   ++   S   
Sbjct: 1172 IDMADDYSKINPADFHKNEILRVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSIS 1231

Query: 616  VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
              +VN I +G V +V D G FV         V IS LS   + +  +  +    V  +++
Sbjct: 1232 QIKVNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVI 1291

Query: 676  DFD-DRGKIKLSMK--VVDQNTGKPI 698
              D +  K+++S+K  V+D N   PI
Sbjct: 1292 LADPESNKLQMSLKQSVLDPNYKTPI 1317



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++ +   GA V F G   G + +S++S   +   +     G  V V  L+ D D  K+
Sbjct: 659 GTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDADFRKL 718

Query: 684 KLSMKV 689
            +S K 
Sbjct: 719 VVSCKD 724



 Score = 45.3 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR--SITDVPEVNKIYKG 625
           G     IR   +     +         I  ++   ++ AR+     +  +  E      G
Sbjct: 784 GAALARIRVGQKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTG 843

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIK 684
            V  ++  G FV F G   G V    +  + V K S        + + +    DDR +  
Sbjct: 844 FVKNIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFI 903

Query: 685 LSMKVVDQNTGK 696
           L++K  + +TGK
Sbjct: 904 LTLK--EPHTGK 913


>gi|259148814|emb|CAY82059.1| Rrp5p [Saccharomyces cerevisiae EC1118]
 gi|323353170|gb|EGA85470.1| Rrp5p [Saccharomyces cerevisiae VL3]
          Length = 1729

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 501  TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-----FTPRVEI 555
            T + +D +   I  + +  A  + +  + H   +  +++      + +     +  R   
Sbjct: 1143 TVLSVDEQNKKIELS-LRSATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201

Query: 556  MAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              +P  ++ +  +    K  + +    G  V  D+D  +  + +           +    
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI--SLTLRESEINGDLKVLKTY 1259

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +   +++G +  V DFG FV         GL HI++++ ++    S +   GD V  
Sbjct: 1260 SDIKAGDVFEGTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKA 1319

Query: 673  KLLDFDDRGK-IKLSMKV 689
             +L  +   K I LS+K 
Sbjct: 1320 IVLKTNPEKKQISLSLKA 1337



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           VNI+D+         ++  E A+ +           +++K         G  + F G   
Sbjct: 584 VNIEDNE-----LPLVSTYENAKNIKEKNEKTLATVQVFK-------PNGCIISFFGGLS 631

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G +  S++S   V +  + ++ G TV VKLLD D DR +I  + KV ++   +
Sbjct: 632 GFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY--KGQV 627
           K +R   E TG  ++ D    V   S   + I+ A++    +T   V ++NK       +
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYI 801

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
             + D G FV F G   GLV  S     R    S       +V V LL  DD+  K  LS
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLS 861

Query: 687 MKV 689
           +K 
Sbjct: 862 LKA 864


>gi|125987739|sp|Q1XDE2|RR1_PORYE RecName: Full=30S ribosomal protein S1, chloroplastic
          Length = 263

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 37/250 (14%)

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           L+D G PIS  +    +   +D ++F  L+     E  L   + +       I  ++   
Sbjct: 43  LVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLLDYNIQSKQLILSIRRLE--- 99

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
                          +A +    +L E S +    +            M I  + I   +
Sbjct: 100 -------------YIRAWKRIRQLLAEDSLLNVMIKGFNKG------GMIINLEGISGFV 140

Query: 568 GMGGKVIRGIVEQTGAK------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
                      EQ   K      +N+++     I S   A I  A   +        V  
Sbjct: 141 PNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLI-------VGN 193

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I +G + ++  +G F+     + GLVHIS+++ + + + S   K GDT+   ++  D + 
Sbjct: 194 IIEGIINQITPYGLFIKVGNLK-GLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQ 252

Query: 681 GKIKLSMKVV 690
           G++ LSMK +
Sbjct: 253 GRLSLSMKHL 262


>gi|256271623|gb|EEU06665.1| Rrp5p [Saccharomyces cerevisiae JAY291]
 gi|323347043|gb|EGA81319.1| Rrp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1729

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 501  TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-----FTPRVEI 555
            T + +D +   I  + +  A  + +  + H   +  +++      + +     +  R   
Sbjct: 1143 TVLSVDEQNKKIELS-LRSATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201

Query: 556  MAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              +P  ++ +  +    K  + +    G  V  D+D  +  + +           +    
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI--SLTLRESEINGDLKVLKTY 1259

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +   +++G +  V DFG FV         GL HI++++ ++    S +   GD V  
Sbjct: 1260 SDIKAGDVFEGTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKA 1319

Query: 673  KLLDFDDRGK-IKLSMKV 689
             +L  +   K I LS+K 
Sbjct: 1320 IVLKTNPEKKQISLSLKA 1337



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           VNI+D+         ++  E A+ +           +++K         G  + F G   
Sbjct: 584 VNIEDNE-----LPLVSTYENAKNIKEKNEKTLATVQVFK-------PNGCIISFFGGLS 631

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G +  S++S   V +  + ++ G TV VKLLD D DR +I  + KV ++   +
Sbjct: 632 GFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY--KGQV 627
           K +R   E TG  ++ D    V   S   + I+ A++    +T   V ++NK       +
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYI 801

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
             + D G FV F G   GLV  S     R    S       +V V LL  DD+  K  LS
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLS 861

Query: 687 MKV 689
           +K 
Sbjct: 862 LKA 864


>gi|207342136|gb|EDZ69994.1| YMR229Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1729

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 501  TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-----FTPRVEI 555
            T + +D +   I  + +  A  + +  + H   +  +++      + +     +  R   
Sbjct: 1143 TVLSVDEQNKKIELS-LRSATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201

Query: 556  MAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              +P  ++ +  +    K  + +    G  V  D+D  +  + +           +    
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI--SLTLRESEINGDLKVLKTY 1259

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +   +++G +  V DFG FV         GL HI++++ ++    S +   GD V  
Sbjct: 1260 SDIKAGDVFEGTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKA 1319

Query: 673  KLLDFDDRGK-IKLSMKV 689
             +L  +   K I LS+K 
Sbjct: 1320 IVLKTNPEKKQISLSLKA 1337



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           VNI+D+         ++  E A+ +           +++K         G  + F G   
Sbjct: 584 VNIEDNE-----LPLVSTYENAKNIKEKNEKTLATVQVFK-------PNGCIISFFGGLS 631

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G +  S++S   V +  + ++ G TV VKLLD D DR +I  + KV ++   +
Sbjct: 632 GFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY--KGQV 627
           K +R   E TG  ++ D    V   S   + I+ A++    +T   V ++NK       +
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYI 801

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
             + D G FV F G   GLV  S     R    S       +V V LL  DD+  K  LS
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLS 861

Query: 687 MKV 689
           +K 
Sbjct: 862 LKA 864


>gi|190408455|gb|EDV11720.1| rRNA biogenesis protein RRP5 [Saccharomyces cerevisiae RM11-1a]
          Length = 1729

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 501  TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-----FTPRVEI 555
            T + +D +   I  + +  A  + +  + H   +  +++      + +     +  R   
Sbjct: 1143 TVLSVDEQNKKIELS-LRSATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201

Query: 556  MAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              +P  ++ +  +    K  + +    G  V  D+D  +  + +           +    
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI--SLTLRESEINGDLKVLKTY 1259

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +   +++G +  V DFG FV         GL HI++++ ++    S +   GD V  
Sbjct: 1260 SDIKAGDVFEGTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKA 1319

Query: 673  KLLDFDDRGK-IKLSMKV 689
             +L  +   K I LS+K 
Sbjct: 1320 IVLKTNPEKKQISLSLKA 1337



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           VNI+D+         ++  E A+ +           +++K         G  + F G   
Sbjct: 584 VNIEDNE-----LPLVSTYENAKNIKEKNEKTLATVQVFK-------PNGCIISFFGGLS 631

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G +  S++S   V +  + ++ G TV VKLLD D DR +I  + KV ++   +
Sbjct: 632 GFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY--KGQV 627
           K +R   E TG  ++ D    V   S   + I+ A++    +T   V ++NK       +
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYI 801

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
             + D G F+ F G   GLV  S     R    S       +V V LL  DD+  K  LS
Sbjct: 802 KSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLS 861

Query: 687 MKV 689
           +K 
Sbjct: 862 LKA 864


>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
           OT3]
 gi|29336585|sp|O59224|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
 gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
           horikoshii OT3]
          Length = 274

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 105/277 (37%), Gaps = 38/277 (13%)

Query: 296 EDIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV- 351
            +I A ++R  +++   +  R+D R  E  R I  +VG++++  GS+L   G TQ +V  
Sbjct: 4   NEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGI 63

Query: 352 -VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
             TLG    E + D+           +   +P A+      G P  R I   R+  R I 
Sbjct: 64  KTTLG----EPFPDT---PNMGVMTTNVELVPLASPTFEP-GPPDERAIELARVTDRGIR 115

Query: 411 PVLPQTAQFP--------YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK----- 457
                  +            + I   + + DG+   A    S  AL++A VP  +     
Sbjct: 116 ESRALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEET 175

Query: 458 ------------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
                       PV  I + +       I++ D S +E+ +      V   ++G  +   
Sbjct: 176 GEVEILEEKEPLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLTVTTDETGHISAVQ 235

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             + G      ++ A++ A +    I   + + + +S
Sbjct: 236 KGEGGAFKLEEVMYAVETAFKKAEEIRKIVLEAIKKS 272



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 45/250 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           RP+++E G I + ++G+ L   G T VL  +             FP T N    T  V  
Sbjct: 34  RPIEIEVGIIEK-AEGSALVKLGSTQVLVGIKTTLGEP------FPDTPNMGVMTTNVEL 86

Query: 73  IPGGYLRRESR-PTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
           +P      E   P E  I ++R+ DR IR           +          + ++V+ HD
Sbjct: 87  VPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFIDVHVLDHD 146

Query: 122 LESSPHVVSMVAASAALMLSGLP---FEGPVVGAQV------------------DYINGQ 160
             +    +  +A+ AAL+ + +P   +       ++                    I   
Sbjct: 147 G-NLMDAIG-IASIAALLNAKVPKVEYNEETGEVEILEEKEPLPVERIPIPVTFAKIGNI 204

Query: 161 YVLNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
            V++P L+E+    G L +    T     + + E      + V+ A+     + + + + 
Sbjct: 205 LVVDPSLEEELVMDGRLTVTTDETGHISAVQKGEGGAFKLEEVMYAVETAFKKAEEIRKI 264

Query: 218 ISKLAKMCAK 227
           + +  K   +
Sbjct: 265 VLEAIKKSGE 274


>gi|146296896|ref|YP_001180667.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410472|gb|ABP67476.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 662

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+ID D  +   S      +A  + I+   +  + NK Y G + ++   G  V+F G R 
Sbjct: 440 VDIDTDKKIAFGSRKFLLRQAQEKKIQQAIESLDFNKDYDGVIAEIRQKGIVVNFEGLR- 498

Query: 645 GLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTG 695
           G V  S++S ++R+     + K G+ V V+++D D + K I LS+K   ++  
Sbjct: 499 GFVPASEISYSKRIEDVKKLFKVGEQVKVRVIDIDKQKKQIYLSIKKTQEDEW 551



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG-----QVVKVMDFGAFVHFCGAR-DG 645
            V        +I  + +  +    + +V  +Y G     +V KV+ FG  V       DG
Sbjct: 528 RVIDIDKQKKQIYLSIKKTQEDEWIKKVKNLYLGMLVDVEVTKVLSFGLVVWILDCELDG 587

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            VH+S +      +   + K GD +  K+++ D+ R +I LS+K + +   K
Sbjct: 588 FVHVSNIPLGYNQRLHSLYKVGDKIKAKIIEIDEQRRRIGLSLKDLYEEEEK 639


>gi|151945933|gb|EDN64165.1| U3 snoRNP protein [Saccharomyces cerevisiae YJM789]
          Length = 1729

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 501  TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-----FTPRVEI 555
            T + +D +   I  + +  A  + +  + H   +  +++      + +     +  R   
Sbjct: 1143 TVLSVDEQNKKIELS-LRSATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201

Query: 556  MAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              +P  ++ +  +    K  + +    G  V  D+D  +  + +           +    
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI--SLTLRESEINGDLKVLKTY 1259

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +   +++G +  V DFG FV         GL HI++++ ++    S +   GD V  
Sbjct: 1260 SDIKAGDVFEGTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKA 1319

Query: 673  KLLDFDDRGK-IKLSMKV 689
             +L  +   K I LS+K 
Sbjct: 1320 IVLKTNPEKKQISLSLKA 1337



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           VNI+D+         ++  E A+ +           +++K         G  + F G   
Sbjct: 584 VNIEDNE-----LPLVSTYENAKNIKEKNEKTLATVQVFK-------PNGCIISFFGGLS 631

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G +  S++S   V +  + ++ G TV VKLLD D DR +I  + KV ++   +
Sbjct: 632 GFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY--KGQV 627
           K +R   E TG  ++ D    V   S   + I+ A++    +T   V ++NK       +
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYI 801

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
             + D G FV F G   GLV  S     R    S       +V V LL  DD+  K  LS
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLS 861

Query: 687 MKV 689
           +K 
Sbjct: 862 LKA 864


>gi|302424003|ref|XP_003009828.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
 gi|261361662|gb|EEY24090.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
          Length = 1789

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGL 646
            D+G  ++  S  + +              + N+I  G++ KV DFGAF+   G     GL
Sbjct: 1266 DEGAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGL 1325

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK------VVDQNTGK 696
             H S+++   V     + + GD V  K+L  D ++ +I   +K       VD + G+
Sbjct: 1326 CHRSEMADSPVEDARKLYQAGDVVKAKVLTLDRNKKRISFGLKPAYFDEDVDMDEGE 1382



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV +   G +  +   GA + F     G + +SQ+S   +    +  K G  V V +L
Sbjct: 632 EVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHIL 691

Query: 676 DFDDRG 681
           + D   
Sbjct: 692 EVDPEN 697



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 622  IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
              +G V  V D G FV   G+   LV IS LS   + +  +  +    V  ++L  D+  
Sbjct: 1210 TVRGFVKHVADKGVFVLLGGSVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDEGA 1269

Query: 681  GKIKLSMK--VVDQN 693
            G+++LS+K  VVD N
Sbjct: 1270 GQVELSLKSSVVDDN 1284



 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
                  G VH +  +  R+       +EG TV  ++L    R + ++L++K    N+  
Sbjct: 565 KVAEGITGYVHETHFADVRLQHPEKKFREGMTVKARVLSVRPRKRQMRLTLKKTLVNSDT 624

Query: 697 PIV 699
           PI+
Sbjct: 625 PII 627



 Score = 44.5 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 552  RVEIMAI--PPDQIRNVI--GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            R+  M +     +I +VI     G  ++  V    AK  + D        S+ ++  AA 
Sbjct: 1054 RINAMDVSDDTSKINDVINNFPIGTALKVRVIAVDAKRGVLD-------LSARSDSSAAV 1106

Query: 608  EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                   D  + N++  G VVKV +    V       G VH+  +S +     +    EG
Sbjct: 1107 -----TWDSIKPNQVLAGCVVKVNERQIMVKLGSNVAGHVHLVDMSDDFGDVNTLKYDEG 1161

Query: 668  DTVWVKLLDFDD-RGKIKLSMK 688
            D + V +++ D    +++LS +
Sbjct: 1162 DAIQVSVVEVDKSNKRVRLSTR 1183



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 599 SLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL--STER 656
              E E+AR             +I + ++V + D    V       G V ISQ+  S ++
Sbjct: 900 PKKEKESARPQAHGPVQDITFGQIVEAKIVGIHDTQLNVETADKVQGRVDISQIFDSWDK 959

Query: 657 VAKTSD---VVKEGDTVWVKLLDFDDRG 681
           +    +     K+GDTV V+ +   D  
Sbjct: 960 IKDPEEPLSQFKKGDTVRVRAIGLHDSK 987


>gi|330720370|gb|EGG98703.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC2047]
          Length = 236

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +   I  G+V  V    A +      +G + +S++S +RV   SDV+  G
Sbjct: 116 DPFSEYVAENDKGTIVTGKVSAVDAKAATIELAEGIEGTLKVSEISRDRVESASDVLNVG 175

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           D V  K+ + D + + I LS+K  D +  K
Sbjct: 176 DDVECKITNVDRKSRNINLSIKAKDVDEEK 205



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+    +   D+   +I+      +  A           +  KI  G +  + DFG F+ 
Sbjct: 3   EEVDVMILDVDEERRRISLGMKQCV--ANPWEEFAATNAKGTKI-TGTIKSITDFGIFLG 59

Query: 639 FCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             G  DGLVH+S +S        + V   K+GD +   +L  D +R +I L +K ++ + 
Sbjct: 60  LEGGIDGLVHLSDISWNEAG--EEAVRAYKKGDEIETVILSIDPERERISLGVKQMESDP 117


>gi|237747229|ref|ZP_04577709.1| tex transcriptional accessory protein [Oxalobacter formigenes
           HOxBLS]
 gi|229378580|gb|EEO28671.1| tex transcriptional accessory protein [Oxalobacter formigenes
           HOxBLS]
          Length = 780

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 575 RGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           + I E+ G    V+I  +          A + A            E   + +G V  V  
Sbjct: 616 KYISERFGLPTIVDILRELEKPGRDPRPAFVSAHFRDGVEEITDLESGMVLEGVVTNVAA 675

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVHIS LS + V     +VK G       L     R +I LSM +  
Sbjct: 676 FGAFVDIGVHQDGLVHISALSEKFVTDPHQIVKSGQLVRVRVLDVDVKRRRIGLSMVLTK 735

Query: 692 QNTG 695
           +N  
Sbjct: 736 ENEA 739


>gi|312135143|ref|YP_004002481.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           owensensis OL]
 gi|311775194|gb|ADQ04681.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           owensensis OL]
          Length = 663

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G   K +  I E+   K+   D    +I  S     +   +          +  +   +V
Sbjct: 513 GTDLKKLFEIGEKVKVKILDIDKNKKQIYLSIKKTHD---DEWAKRIKNLYLGMLVDCEV 569

Query: 628 VKVMDFGAFV-HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
            KV+ FG  V       DG VHIS +      +  +V K GD++  K+++ D ++ ++ L
Sbjct: 570 TKVLPFGLVVWIIEYDVDGFVHISNIPLGYNQRPHNVYKVGDSLRAKVIEIDEEKRRVAL 629

Query: 686 SMKVVDQNT 694
           S+K + +  
Sbjct: 630 SLKDLYEEE 638


>gi|260575707|ref|ZP_05843704.1| RNA binding S1 domain protein [Rhodobacter sp. SW2]
 gi|259022105|gb|EEW25404.1| RNA binding S1 domain protein [Rhodobacter sp. SW2]
          Length = 772

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTG------AKVNIDDDGTVKIASSSLAEIEAA----REMI 610
           D  R ++   G+ +R ++ + G       +  ID+   +      LAE+E      R   
Sbjct: 576 DLARKIVAACGRDLRAVMAEPGVLRALDPRDFIDERFGLPTVKDILAELEKPGRDPRPSF 635

Query: 611 RSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ T   EV  I         +G V  V  FGAFV     +DGLVH+SQL+   V     
Sbjct: 636 KTATFSEEVQDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADAFVKDPHA 695

Query: 663 VVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           VVK GD V V++++ D  R +I L+MK
Sbjct: 696 VVKAGDVVKVRVVEVDVARKRIGLTMK 722


>gi|294893125|ref|XP_002774343.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
 gi|239879681|gb|EER06159.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
          Length = 258

 Score = 64.9 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 18/177 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R  + ++GLL +  GS+    GDT+ +V               ++G   N
Sbjct: 26  RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLV--------------GVNGPVEN 71

Query: 373 DFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEI 429
            F +  +          R   G P+  +        + I+ ++        T + +  E+
Sbjct: 72  RFPLGVSTPGYPLDVTVRRASGMPTAEDKSVEYQLTKFINTIIDTHLLPGNTMVTVAVEV 131

Query: 430 TESDGSSSMATVCGSSLALMDAG-VPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             +DGS        + LAL+DAG +P+       A+G         IL D    E+ 
Sbjct: 132 MNNDGSLLSTIFNAAILALLDAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEEE 188



 Score = 43.7 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 34/228 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP  LE G +  Q DG+    +G+T VL  V      +     FPL V     +     +
Sbjct: 36  RPPTLELG-LLPQKDGSARLGFGDTEVLVGVNGPVENR-----FPLGV-----STPGYPL 84

Query: 74  PGGYLRRESRPTEN----EILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                R    PT      E  +++ I+  I             V + VM +D      + 
Sbjct: 85  DVTVRRASGMPTAEDKSVEYQLTKFINTIIDTHLLPG-NTMVTVAVEVMNNDGSLLSTIF 143

Query: 130 SMVAASAALMLSG-LPFEGPVVGAQVD----YINGQYVLNPRLDEDQGSLDLFVSGT--- 181
              AA  AL+ +G +P  G    A +         Q +++P   E++ S     + T   
Sbjct: 144 --NAAILALLDAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEEESS---VFTDTFVI 198

Query: 182 ----QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
               QD V++V   A   + +  ++A           ++A  K  + C
Sbjct: 199 DIHSQDVVMLVRDVAVGAAAEKEVEADALAPTAV-AAVKAFEKYVRSC 245


>gi|302776674|ref|XP_002971488.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
 gi|300160620|gb|EFJ27237.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
          Length = 382

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            ++      + A      S        +I    +  +  FG F+     +  L H++++S
Sbjct: 203 PLSGHIEMSLAATTSQDSSGWKKFGAGEIVSDCIHNIEAFGIFISLA--KSCLCHVAEVS 260

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            + +   S + K G  V VK+L  D +  +I L MK 
Sbjct: 261 YDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKA 297


>gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8O8]
          Length = 273

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 94/260 (36%), Gaps = 39/260 (15%)

Query: 291 IVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIV 350
           ++S+ + ++   +  ++  +  R+DGR  +  R +S  VG++   +GS+    GDT+ + 
Sbjct: 3   VISILDKLKRTKILDLL-QEGKRIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVA 61

Query: 351 VVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA------------TGEVSRMGAPSRRE 398
            V +    D  + D     ++  F+     LP A              E++R+     RE
Sbjct: 62  GVKIQP--DRPFPDM---GEKGIFICTAEILPLAHPSVETGPPQPYVIEIARVVDRGIRE 116

Query: 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---I 455
            G   L++  +         F   +     +T+ DG+   A    S+ A++ + +P   +
Sbjct: 117 SGMIDLSQMVLVKDKSVIGLFADNV-----VTDHDGNLFDACSYASTAAVLTSKMPKWEM 171

Query: 456 SK-------------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
                          P+  I + +        I+ D + DE         +     G   
Sbjct: 172 KDDKPVLVDGEESDTPITTIPVSVTMGLIGEYIIVDPNLDEWECLDARITITTNSDGNIV 231

Query: 503 MQMDMKIGGISENIMVMALQ 522
                   G S + ++   +
Sbjct: 232 ALQKGGSSGFSLDQLIKCSE 251



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 51/243 (20%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RPL ++ G I   ++G+     G+T V+A V     ++  + F    +  +       +I
Sbjct: 34  RPLSIDVGVI-PHANGSARVRLGDTEVVAGV----KIQPDRPF--PDMGEKGIFICTAEI 86

Query: 74  PG--GYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVII------------NVMQ 119
                       P    I I+R++DR IR        + +Q+++            NV+ 
Sbjct: 87  LPLAHPSVETGPPQPYVIEIARVVDRGIR---ESGMIDLSQMVLVKDKSVIGLFADNVVT 143

Query: 120 HDLESSPHVVSMVAASAALML-------------------SGLPFEGPVVGAQVDYINGQ 160
               +     S  + +A L                     S  P     V   +  I   
Sbjct: 144 DHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVLVDGEESDTPITTIPVSVTMGLIGEY 203

Query: 161 YVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVVLDA----IIFGHNECKP 213
            +++P LDE +     + +  +   + V + +  ++  S D ++      I  G  E + 
Sbjct: 204 IIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSGFSLDQLIKCSELSISTG-PEIRE 262

Query: 214 VIE 216
           +I+
Sbjct: 263 IIK 265


>gi|222618762|gb|EEE54894.1| hypothetical protein OsJ_02412 [Oryza sativa Japonica Group]
          Length = 402

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           +    +T + E   + +G V K+  +GA V   G  R GL+HIS +S  RV   SD++K 
Sbjct: 240 KKAWEMTYLKEG-TLLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKI 298

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            + V V ++  +   KI LS+  ++   G
Sbjct: 299 DEEVKVLVVKSNVPDKIALSISDLESTPG 327


>gi|254586193|ref|XP_002498664.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
 gi|238941558|emb|CAR29731.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
          Length = 1717

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 558  IPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +P  ++ +  I    K  + +    G  VN DDD  +    +           I    D 
Sbjct: 1199 VPVSKLSDSYIKEWKKFYQPMQHVVGKVVNCDDDSRI--LLTLRESEVNGDLKILKGYDD 1256

Query: 617  PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
             +V  I+ G V  V DFG FV         GL H ++++ E     + +   GD V   +
Sbjct: 1257 IKVGDIFNGHVKNVTDFGVFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYI 1316

Query: 675  LDFD-DRGKIKLSMKV 689
               + ++ KI LS+K 
Sbjct: 1317 TKVNAEKRKISLSLKA 1332



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            E         S   +   N++    V +    G F+ F G   G +  +++S   V + 
Sbjct: 583 EENTKVISSYDSANALKSANEVTIATVQQFHTKGCFLTFFGKLKGFLPNAEISEVFVRRP 642

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKI 683
            D ++ G TV VKL++ D +R +I
Sbjct: 643 QDHLRLGQTVSVKLIEVDEERSRI 666



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 575  RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
              IV  T   V+ +++  +K++  S A    A           +   I +  V    D G
Sbjct: 1132 NQIVSATVLLVD-EENSRIKLSLRSPAAKTHAISSHE----DLKKGAIVQALVKGTTDKG 1186

Query: 635  AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             FV+     +  V +S+LS   + +     +    V  K+++ DD  +I L+++ 
Sbjct: 1187 VFVYLSSNLEAFVPVSKLSDSYIKEWKKFYQPMQHVVGKVVNCDDDSRILLTLRE 1241



 Score = 44.1 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 608 EMIRSITDVPEVNKIYKGQV-VKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSD 662
           E+     +     ++  G   V V   G  +   G++      L+HIS +   R+     
Sbjct: 493 ELRYLRAEDIPAGELVTGCEIVTVSSKGIELRLFGSQFKAFVPLLHISDI---RLVYPER 549

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKV----VDQNTGKPI 698
             K G  V  ++L  D RG+I  ++K     +D+   K I
Sbjct: 550 KFKIGSKVKCRVLSVDARGRIFATLKKSLVGLDEENTKVI 589


>gi|109000938|ref|XP_001098176.1| PREDICTED: nucleolar protein of 40 kDa isoform 1 [Macaca mulatta]
 gi|73921228|sp|Q95KF9|NO40_MACFA RecName: Full=Nucleolar protein of 40 kDa; Short=pNO40; AltName:
           Full=Putative S1 RNA-binding domain protein; Short=PS1D
           protein; AltName: Full=Zinc finger CCHC
           domain-containing protein 17
 gi|13874572|dbj|BAB46900.1| hypothetical protein [Macaca fascicularis]
          Length = 193

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDF---DDRGKIKLSMKVVDQNTGKPI 698
           +S+ RV K S++V  GD VWVKL+     +DR K+ LSMKVV+Q TGK +
Sbjct: 1   MSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDL 50


>gi|71410043|ref|XP_807336.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
 gi|70871314|gb|EAN85485.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
          Length = 229

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 68/234 (29%), Gaps = 13/234 (5%)

Query: 312 VRMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            R  GR+  + VR     + +L + H S+    G+T+ I  V       +Q VD   G+ 
Sbjct: 2   KRNGGRETPDGVRYPHIALDVLGQCHSSACVELGNTRVICAV----HHPQQLVDEYRGS- 56

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRR--EIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
           R            A    +    PS    E             V+         + +V E
Sbjct: 57  RGRVACTVRRSASAGSHSAGSAQPSVVTPEKDMSLALEGVAEEVVILEKIPQLLVEVVVE 116

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           I   DG    A     S AL+  G  +    +     L+ DG    ++ D    E+    
Sbjct: 117 ILAEDGGVWDAVATSMSAALVSGGFEMHDLFSACGSALLSDG---AVVLDPDAAEESNAQ 173

Query: 489 MDFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
               V        I   +        +   +V +  +    R   +        
Sbjct: 174 ASALVCVMLNSGEICYARHQGSCEPGTVLELVSSAMKGCLSRKSAITTQLINHP 227


>gi|70945753|ref|XP_742662.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521770|emb|CAH81958.1| hypothetical protein PC000099.05.0 [Plasmodium chabaudi chabaudi]
          Length = 669

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 7/144 (4%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
                          R   +   AK +  DD   K +     +               +V
Sbjct: 165 KKNRHKDYSSDDDRGRKRSKYDDAKRSKHDD--RKRSKYDDRKRSKRDSSSEPDYRALKV 222

Query: 620 NKIYKGQVVKVMDFGAFVHF---CGARDGLVHISQLSTERVA-KTSDVVKEGDTVWVKLL 675
             I+ G + K+ DFG FV F    G ++GLVHI+ +         ++  K    V VK+ 
Sbjct: 223 GNIFSGSIKKITDFGMFVSFKTREGYKEGLVHITDVEKNNKKINLNENYKRNMIVKVKIK 282

Query: 676 DFDDRGKIKLSMKVVDQNTGKPIV 699
                 KI L+M  VDQ TGK +V
Sbjct: 283 GIFGE-KISLNMSEVDQKTGKNLV 305


>gi|11465811|ref|NP_053955.1| ribosomal protein S1 [Porphyra purpurea]
 gi|1710701|sp|P51345|RR1_PORPU RecName: Full=30S ribosomal protein S1, chloroplastic
 gi|1276811|gb|AAC08231.1| 30S ribosomal protein S1 [Porphyra purpurea]
          Length = 263

 Score = 64.5 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR- 680
           I +G + ++  +G F+     + GLVHIS+++ ++V +     K GDT+   ++  D + 
Sbjct: 194 IIEGVINQITPYGLFIKAGNLK-GLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQ 252

Query: 681 GKIKLSMKVV 690
           G++ LSMK +
Sbjct: 253 GRLSLSMKHL 262


>gi|99080544|ref|YP_612698.1| RNA binding S1 [Ruegeria sp. TM1040]
 gi|99036824|gb|ABF63436.1| RNA binding S1 [Ruegeria sp. TM1040]
          Length = 814

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLD 676
           +   + +G V  V  FGAFV     +DGLVH+SQL+ + V    ++VK G       +  
Sbjct: 675 KPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEIVKTGQVVKVTVVEV 734

Query: 677 FDDRGKIKLSMK 688
              R +I L+MK
Sbjct: 735 DVPRKRIGLTMK 746


>gi|76801459|ref|YP_326467.1| translation initiation factor IF-2 subunit alpha [Natronomonas
           pharaonis DSM 2160]
 gi|76557324|emb|CAI48900.1| translation initiation factor aIF-2 alpha subunit [Natronomonas
           pharaonis DSM 2160]
          Length = 266

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P   ++  G+V ++ DFG FV      +  GLVH+S++++  +    D V E   V  K+
Sbjct: 7   PTPGELVVGRVDEIEDFGVFVDLEEYEEKRGLVHVSEVASGWIKNVRDHVNEDQMVVCKV 66

Query: 675 LDFDDR-GKIKLSMKVVD 691
           L+ D+   ++ LS+K V+
Sbjct: 67  LEVDESAQQVDLSIKDVN 84


>gi|299116642|emb|CBN76266.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 985

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           PE+  IY G V K             ++GLVH+SQ+    +   S VVK G    VK++ 
Sbjct: 321 PELYGIYDGSVSKAN--------GKRQEGLVHVSQIQNGMLRDPSKVVKRGQNCKVKVIS 372

Query: 677 FDDRGKIKLSMKVVDQNTGKPIV 699
                ++ LS+K VDQ TG+ ++
Sbjct: 373 MAGA-RLSLSIKEVDQATGEDLM 394


>gi|297182786|gb|ADI18940.1| ribosomal protein s1 [uncultured SAR11 cluster bacterium
           HF0010_09O16]
          Length = 349

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +  D  E+ K Y  ++VK+MDFGAF         L+H S+L  ++      + K GD V 
Sbjct: 55  TNIDKYEIGKDYDVKIVKLMDFGAFAELEKGLICLIHNSELGFKKSLSAKKMFKVGDIVK 114

Query: 672 VKLLDFD-DRGKIKLSMK 688
            +LLD D ++ ++  S K
Sbjct: 115 CRLLDIDQNKRRVAASRK 132



 Score = 38.0 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF-CGAR 643
           ++ID +     AS  L  +       ++  D   V  + +G VV   ++  F+       
Sbjct: 118 LDIDQNKRRVAASRKLCLVN----PYQAFADQYPVGTVCEGVVVNKNEYALFLKIKDTEI 173

Query: 644 DGLVHISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +   H S LS   +    + +   ++GDT+ VK+++      K++ S +    + 
Sbjct: 174 ETFCHCSDLS--FLNDPEEELNKYQKGDTLHVKVMEIKISEQKVRTSHRATLSDP 226


>gi|284053153|ref|ZP_06383363.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
           str. Paraca]
 gi|291567299|dbj|BAI89571.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
          Length = 294

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++ +G V  +  FG F+   G   GL+HI ++S + V    D+   G TV   ++  
Sbjct: 191 QVGQLVEGTVGSIKPFGVFIELEG-VTGLIHIKEVSQKYVGSLPDIFTLGQTVKALVISL 249

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           ++ R ++ LS ++++   G+
Sbjct: 250 EEGRQRVSLSTRLLENYPGE 269


>gi|294889655|ref|XP_002772906.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
 gi|239877486|gb|EER04722.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
          Length = 258

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 18/177 (10%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR+   +R  + ++GLL +  GS+    GDT+ +V               ++G   N
Sbjct: 26  RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLV--------------GVNGPVEN 71

Query: 373 DFMMHYNFLPCATGEVSRM--GAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEI 429
            F +  +          R   G P+  +        + I+ ++        T + +  E+
Sbjct: 72  RFPLGVSTPGYPLDVTVRRASGMPTAEDKSVEYQLTKFINTIIDAHLLPGNTMVTVAVEV 131

Query: 430 TESDGSSSMATVCGSSLALMDAG-VPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
             +DGS        + LAL+DAG +P+       A+G         IL D    E+ 
Sbjct: 132 MNNDGSLLSTIFNAAILALLDAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEEE 188



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 34/228 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RP  LE G +  Q DG+    +G+T VL  V      +     FPL V     +     +
Sbjct: 36  RPPTLELG-LLPQKDGSARLGFGDTEVLVGVNGPVENR-----FPLGV-----STPGYPL 84

Query: 74  PGGYLRRESRPTEN----EILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVV 129
                R    PT      E  +++ I+  I             V + VM +D      + 
Sbjct: 85  DVTVRRASGMPTAEDKSVEYQLTKFINTIIDAHLLPG-NTMVTVAVEVMNNDGSLLSTIF 143

Query: 130 SMVAASAALMLSG-LPFEGPVVGAQVD----YINGQYVLNPRLDEDQGSLDLFVSGT--- 181
              AA  AL+ +G +P  G    A +         Q +++P   E++ S     + T   
Sbjct: 144 --NAAILALLDAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEEESS---VFTDTFVI 198

Query: 182 ----QDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225
               QD V++V   A   + +  ++A           ++A  K  + C
Sbjct: 199 DIHSQDVVMLVRDVAVGAAAEKEVEADALAPTAV-AAVKAFEKYVRSC 245


>gi|24667071|ref|NP_649157.1| Mtr3 [Drosophila melanogaster]
 gi|7293727|gb|AAF49096.1| Mtr3 [Drosophila melanogaster]
 gi|157816310|gb|ABV82149.1| FI01414p [Drosophila melanogaster]
          Length = 326

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 70/206 (33%), Gaps = 23/206 (11%)

Query: 267 QIDDLKKKMVS-YFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETV--R 323
            ++  K  ++      E       E    FE +                  R+   +  R
Sbjct: 3   AVNQTKNTLLDGASIEEEPYTTPQESEDFFESLDK--------------PSREPTQLAPR 48

Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPC 383
           +   + G+L    GS+    G+T+ + +V       E    S           + NF   
Sbjct: 49  NTFIRAGVLTTVRGSAYMEYGNTKVLAIV---APPKELIRASARRMNMGVLNCYVNFAAF 105

Query: 384 ATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCG 443
           +TG++  +     RE     +  +A+ PV+ +T    + L I   I + DG      +  
Sbjct: 106 STGDLDSVPE---RERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINC 162

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKD 469
             +AL++ G+     +      + +D
Sbjct: 163 CGVALVECGISTYDLITASTACIYRD 188



 Score = 44.1 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VLA V   + L            L        ++ G +           
Sbjct: 62  GSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLDS--------V 113

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +S M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 114 PERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 173

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               +  +          LNP    ++
Sbjct: 174 TYDLITASTACIYRDHVFLNPSAKVEE 200


>gi|167748502|ref|ZP_02420629.1| hypothetical protein ANACAC_03246 [Anaerostipes caccae DSM 14662]
 gi|167652494|gb|EDR96623.1| hypothetical protein ANACAC_03246 [Anaerostipes caccae DSM 14662]
          Length = 713

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 567 IGMGGKVIRGIVEQTGA-KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI--- 622
           IG      + + E+ G  ++ + D   VK       +           TDV E+  +   
Sbjct: 585 IGKKITDYQRLSEELGVGEITLRD--IVKELEKPGRDPREDMPKPILRTDVMEMEDLKEG 642

Query: 623 --YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
              KG V  V+DFGAFV     +DGLVHISQ++   V    +VV  GD V V +L  D +
Sbjct: 643 MKLKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFVKHPLEVVSVGDVVDVTVLSVDLE 702

Query: 680 RGKIKLSMK 688
           + +I+LSM+
Sbjct: 703 KKRIQLSMR 711


>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
           AV19]
 gi|29336820|sp|Q8TYC2|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
 gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
           RNase PH [Methanopyrus kandleri AV19]
          Length = 267

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 97/267 (36%), Gaps = 39/267 (14%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +   I+   V   +   + R+DGRD E  R I  + G++ + +GS+L   G+TQ +V V
Sbjct: 4   DLLARIKRHEVLAAIRAGE-RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGV 62

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA---- 408
            L       Y DS          ++   +P A       G P    I   R+  R     
Sbjct: 63  KLEVGRP--YPDS---PNEGALAVNAELVPLADPSFEP-GPPDENAIELSRVVDRGIRES 116

Query: 409 ----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---------- 454
               +  +  +  +  +   +   + + DG+   A++ GS  AL    VP          
Sbjct: 117 EMIDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVE 176

Query: 455 ----------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
                     I+     + +  V +     +L D   +E+ +      V  T+SG     
Sbjct: 177 VMEEDTEPLAINDFPISVTIAKVGE----YLLVDPCLEEEVIMDTRLTVTVTESGEVCAV 232

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHI 531
              ++G   E+++  A+  A +    +
Sbjct: 233 QKGELGDFPEHLLEDAIDLATKKAEEV 259



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 55/247 (22%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           RP+++  G I++ ++G+ L   G T ++  V   V         +               
Sbjct: 33  RPIEVRAGVISK-ANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGAL--------AVNA 83

Query: 71  GKIPGGYLRRESR-PTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQ 119
             +P      E   P EN I +SR++DR IR        +    E      T V I+V+ 
Sbjct: 84  ELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVLD 143

Query: 120 HDLESSPHVVSMVAASAALMLSGLP---------------------FEGPVVGAQVDYIN 158
           HD  +     SM+ + +AL ++ +P                      + P+    +  + 
Sbjct: 144 HDG-NLFD-ASMIGSVSALSITEVPKAEVVDDEVEVMEEDTEPLAINDFPIS-VTIAKVG 200

Query: 159 GQYVLNPRLDEDQGSLD--LFVSGTQDA-VLMVE-LEANQLSEDVVLDAIIFG---HNEC 211
              +++P L+E +  +D  L V+ T+   V  V+  E     E ++ DAI        E 
Sbjct: 201 EYLLVDPCLEE-EVIMDTRLTVTVTESGEVCAVQKGELGDFPEHLLEDAIDLATKKAEEV 259

Query: 212 KPVIEAI 218
           +  ++A 
Sbjct: 260 RRTVKAQ 266


>gi|307721106|ref|YP_003892246.1| Tex-like protein [Sulfurimonas autotrophica DSM 16294]
 gi|306979199|gb|ADN09234.1| Tex-like protein [Sulfurimonas autotrophica DSM 16294]
          Length = 698

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-WVKLLDFD-DR 680
             G V  + DFGAF+      DGL+HIS++ST+RV    +++     +  ++++  D + 
Sbjct: 631 VSGIVRNIADFGAFIDIGLKNDGLIHISKMSTKRVKHPLEILTLNQYLPQIEIVSIDYNS 690

Query: 681 GKIKLSM 687
           GKI LS+
Sbjct: 691 GKIGLSL 697


>gi|195476691|ref|XP_002086206.1| GE23007 [Drosophila yakuba]
 gi|194185996|gb|EDW99607.1| GE23007 [Drosophila yakuba]
          Length = 328

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R+   + G+L    GS+    G+T+ + +V       E    S           + NF  
Sbjct: 48  RNTFIRAGVLTTVRGSAYMEYGNTKVLAIV---APPKELIRASARRMNMGVLNCYVNFAA 104

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            ATG++  +     RE   G +  +A+ PV+ +T    + L I   I + DG      + 
Sbjct: 105 FATGDLDSVPE---RERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAIN 161

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKD 469
              +AL++ G+     +      + +D
Sbjct: 162 CCGVALVECGISTYDLITASTACIYRD 188



 Score = 43.7 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VLA V   + L            L        +A G +           
Sbjct: 62  GSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFATGDLDS--------V 113

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +  M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 114 PERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 173

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               +  +          +NP    ++
Sbjct: 174 TYDLITASTACIYRDHVFINPSAKVEE 200


>gi|186685479|ref|YP_001868675.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186467931|gb|ACC83732.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
          Length = 719

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
            +G V  V +FGAFV     +DGLVHISQL+   V   + +VK G  V V++L+ +++  
Sbjct: 649 LEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPNKIVKVGQVVKVQVLEINEKLK 708

Query: 682 KIKLSMKVVDQ 692
           +I LSMK V Q
Sbjct: 709 RISLSMKAVKQ 719


>gi|294927834|ref|XP_002779184.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
 gi|239888189|gb|EER10979.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
          Length = 192

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 3/173 (1%)

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                  + Y     AT +  R     R         +R I   +         + +   
Sbjct: 4   QGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDVHLT 63

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           I + DGS+  A V  ++ AL+DAG+PI    +   +GLV +    +   D++  E     
Sbjct: 64  ILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIV---DLNHAESEGCG 120

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                         +      G I+      A   A  G +  +  M   + E
Sbjct: 121 GAVVTVAVYQRRKELNYLCLEGKINIESFESAANLAIEGAVTAVRAMRTFIQE 173


>gi|312622436|ref|YP_004024049.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202903|gb|ADQ46230.1| hydroxymethylbutenyl pyrophosphate reductase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 663

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             KV I D    K       +     E I+ I ++  +  +   +V KV+ FG  V    
Sbjct: 525 KVKVKILDIDKNKKQIYLSIKKTQDDEWIKKIKNLY-LGMLVDCEVTKVLPFGLVVWITE 583

Query: 642 A-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              DG VHIS +      +  ++ K GD++  K+++ D ++ +I LS+K + +  
Sbjct: 584 HDVDGFVHISNIPLGYNQRPHNLYKVGDSLRAKVIEIDEEKRRIALSLKDLHEEE 638



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 574 IRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           I  I +    ++ ++  +  +   S      +   E      +  + ++ Y+G VV++ +
Sbjct: 429 ISDIGKIFEIEITDVSKEKKIAFGSRKSLLKQREEERFIKQINSLDFSREYEGTVVEIRE 488

Query: 633 FGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVV 690
            G  V+F   R G V +S++   ++ A+   + + G+ V VK+LD D   K I LS+K  
Sbjct: 489 KGIVVNFEKLR-GFVPVSEVGYLKKGAEFKKLFELGEKVKVKILDIDKNKKQIYLSIKKT 547

Query: 691 DQNTG 695
             +  
Sbjct: 548 QDDEW 552



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW-VKL 674
             +  ++ KG+++KV +    V      +G+++  ++         D+ K G+ +  V +
Sbjct: 301 TVQRGEVVKGRIIKVEEDYLLVDIGYKAEGIIYKDEVIKNGNVNLKDLFKIGEVIEAVVI 360

Query: 675 LDFDDRGKIKLS 686
            + D+ G + LS
Sbjct: 361 KESDEEGNVVLS 372


>gi|116491226|ref|YP_810770.1| RNA-binding protein [Oenococcus oeni PSU-1]
 gi|290890769|ref|ZP_06553836.1| hypothetical protein AWRIB429_1226 [Oenococcus oeni AWRIB429]
 gi|116091951|gb|ABJ57105.1| RNA binding protein (S1 domain) [Oenococcus oeni PSU-1]
 gi|290479541|gb|EFD88198.1| hypothetical protein AWRIB429_1226 [Oenococcus oeni AWRIB429]
          Length = 131

 Score = 64.5 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++ +   G V  + ++G FV       GLVHIS+    R+    +    G  V   +
Sbjct: 1   MDYKIGQRVTGTVSGIQNYGVFVQLDSKTQGLVHISECKNGRIDNLPEEFHIGQPVEAII 60

Query: 675 LDFDD-RGKIKLSMKVV 690
           LD D+   KI LS + +
Sbjct: 61  LDIDNYSKKISLSFRQL 77


>gi|237749386|ref|ZP_04579866.1| tex transcriptional accessory protein [Oxalobacter formigenes
           OXCC13]
 gi|229380748|gb|EEO30839.1| tex transcriptional accessory protein [Oxalobacter formigenes
           OXCC13]
          Length = 784

 Score = 64.5 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I  +            + A              + I +G V  V  FGAFV     +D
Sbjct: 633 VDILKELEKPGRDPRPEFVSAHFREGVEDIKDLRPDMILEGVVTNVTAFGAFVDIGVHQD 692

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           GLVHIS LS + V     VV  G  V VK+++ D  R +I L+M
Sbjct: 693 GLVHISALSDKFVKDPHQVVSTGQVVRVKVVEVDLQRRRIALTM 736


>gi|295293739|gb|ADF88266.1| RNA-binding S1 domain-containing protein [Aphanizomenon sp. 10E6]
          Length = 300

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S   + E+ ++ +G++  +  FG FV F      L+HI Q+S + +     + + G  + 
Sbjct: 191 SNFSLLEIGQLIEGKITGIKPFGVFVDF-NGVSALLHIKQVSQKFIDSLEKIFQIGQPIK 249

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGK 696
             ++D D+ +G++ +S ++++   G+
Sbjct: 250 AVIIDLDEGKGRVAISTRILENFPGE 275



 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
            A+SS +  + A+ + +      +  ++ +G+V +V   GA+V   G     +   + S 
Sbjct: 10  TANSSFSMDDFAKALEKHDYQFQKG-QVVRGKVFQVDHDGAYVDIGGKSSAFLPQEEASL 68

Query: 655 ERVAKTSDVVKEGDTVWVKLL-DFDDRGKIKLSMKVVD 691
             VA  S+V+   + +   ++ D D  G++ +S K ++
Sbjct: 69  RAVADLSEVLPMNEELEFLIIRDQDAEGQVTISRKQLE 106


>gi|281200684|gb|EFA74902.1| hypothetical protein PPL_11936 [Polysphondylium pallidum PN500]
          Length = 262

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 300 AKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           +K+V+     ++V+   R  E  R I    G++    GSS      T+ I  V  G R  
Sbjct: 39  SKLVQQQQPKQRVKRTSRSDEQFRQIFMNTGIISSASGSSYIEIEQTKIICSVH-GPRAT 97

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
            +        +         +   +T +       S +E  +  +  +AI   +      
Sbjct: 98  HKT----ELFETAKLNCELKYASFSTHDARSDYVESTKEKDYSLIITQAIIGAIRLEKYP 153

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
              + I   +    GS+  A++  +S+AL DAGV +   VA  + 
Sbjct: 154 KAAIDIYILVLCDAGSALAASIVAASMALADAGVEMYDLVAACSS 198


>gi|48477477|ref|YP_023183.1| translation initiation factor IF-2 subunit alpha [Picrophilus
           torridus DSM 9790]
 gi|48430125|gb|AAT42990.1| protein translation initiation factor 2 subunit alpha [Picrophilus
           torridus DSM 9790]
          Length = 251

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +P+V  +    + ++ ++GA V         G +HI++++T  +    D +KE      K
Sbjct: 4   LPDVGDLVVVTIKEIKNYGAIVTLDEYENVTGFIHITEVATGWIKHIKDYLKENQKTVCK 63

Query: 674 LLDFDDRGK-IKLSMKVVDQNTGKP 697
           +LD D   + + LS+K V+++  + 
Sbjct: 64  VLDVDKSRRHVDLSLKRVNEHQRRE 88


>gi|115608225|ref|XP_793149.2| PREDICTED: similar to Exosome component 5, partial
           [Strongylocentrotus purpuratus]
 gi|115608377|ref|XP_001181744.1| PREDICTED: similar to Exosome component 5, partial
           [Strongylocentrotus purpuratus]
          Length = 185

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 15/151 (9%)

Query: 348 AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           +++    G  +      + +   +    + Y           ++G    RE    R+ R 
Sbjct: 3   SVMAAVYGPGD---VKPNKALMDKATVTVTYK---------PKIGISGVREKALERMIRN 50

Query: 408 AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV 467
               VL  T     ++ I+ +  +  G+    ++  + LA+++AG+P+   VA     + 
Sbjct: 51  TCETVLLTTLFPRSSVDIIVQEIQDAGALLACSINAACLAMINAGIPMKCTVAASCCMMG 110

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
           KD +   ++ D + ++          A   S
Sbjct: 111 KDEE---LIMDPTKEQTKDAECVLTSAIDSS 138



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 37  ETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENEILISR 93
           +T V+A V     +K      D   +TV Y+ +    G                E  + R
Sbjct: 1   DTSVMAAVYGPGDVKPNKALMDKATVTVTYKPKIGISGV--------------REKALER 46

Query: 94  MIDRSIRPLFSK--CYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVG 151
           MI  +   +       ++   +I  V +     +    S+ AA  A++ +G+P +  V  
Sbjct: 47  MIRNTCETVLLTTLFPRSSVDII--VQEIQDAGALLACSINAACLAMINAGIPMKCTVAA 104

Query: 152 --AQVDYINGQYVLNPRLDEDQ 171
               +   + + +++P  ++ +
Sbjct: 105 SCCMMGK-DEELIMDPTKEQTK 125


>gi|301620138|ref|XP_002939437.1| PREDICTED: exosome complex exonuclease RRP46 [Xenopus (Silurana)
           tropicalis]
          Length = 181

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 388 VSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447
             + G P+ +E    +L R     V+  +     ++ IV +I    GS     +  + + 
Sbjct: 27  RPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCLNAACMG 86

Query: 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
           LMDAG+P+     G+   +  DG    I  D +  +          A 
Sbjct: 87  LMDAGLPMRALFCGVTCAMDNDG---TITLDPNFRQQKESRAVLTFAI 131


>gi|323445343|gb|EGB02000.1| hypothetical protein AURANDRAFT_18312 [Aureococcus anophagefferens]
          Length = 88

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+++GAFV+     DGLVHIS++S  RV      +  GD V V+++D D D+  +
Sbjct: 5   GTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLDKATL 64

Query: 684 KLSMKVVDQNTGKP 697
            L+M      T  P
Sbjct: 65  GLAMNTYRDPTAPP 78


>gi|296804114|ref|XP_002842909.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
 gi|238845511|gb|EEQ35173.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
          Length = 1819

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-- 641
            ++ + D  + KI  +                   +V +I  G+V KV ++GAF+   G  
Sbjct: 1293 RITLVDKESNKIQMTLKKSALDPNYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSA 1352

Query: 642  ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
               GL H S+++ +RV   + + ++ D V  K+L  D ++ +I L +K 
Sbjct: 1353 NLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKILKVDLEKCQIALGLKA 1401



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G ++K+ + GA V F G   G + +S++S   ++  S     G  V V  L  D + GK+
Sbjct: 662 GTLIKIQNNGAVVQFYGPVRGFLPVSEMSEAYISDPSQHFTVGQVVNVHALSVDPENGKL 721

Query: 684 KLSMKV 689
            +S K 
Sbjct: 722 VVSCKD 727



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            V +I +G + +V + G FV         + +S LS   + +  D  +    V  ++   D
Sbjct: 1239 VGQIVRGFIRRVDNIGVFVTLGHNVSAYIRVSDLSDSYLKEWKDEFQVDQLVQGRITLVD 1298

Query: 679  -DRGKIKLSMK--VVDQN 693
             +  KI++++K   +D N
Sbjct: 1299 KESNKIQMTLKKSALDPN 1316



 Score = 44.5 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           G  V       GLV    ++  ++       +EG  V V++L  D  + +++L+MK
Sbjct: 582 GLIVSLTDKISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKHQLRLTMK 637


>gi|163848505|ref|YP_001636549.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526439|ref|YP_002570910.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669794|gb|ABY36160.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450318|gb|ACM54584.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 554

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +  +   +             R       + +I  G V++V+ +GA +   G  +G VH+
Sbjct: 357 NNGIVPETVLSETYNERIRQRRQRLAGLTIGQIVNGSVLRVLRYGAVIEL-GGIEGFVHV 415

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTG 695
            ++    +      +  G  +   +   D++  +  LSM+ V  +  
Sbjct: 416 GEIDWRWIGDARHALHPGQEIQAVITGIDEQRLRANLSMRRVHPDPW 462



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   ++          +G V  + DFG F+       GL HISQ+  ++          G
Sbjct: 460 DPWLAVAQQLNAGMQVQGTVAGITDFGIFIELLPGVQGLAHISQIPPDQ-QPLKQAFSLG 518

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
             V   +L  D +R +I LS+
Sbjct: 519 RRVQTTILSIDHERRRIALSL 539


>gi|223993171|ref|XP_002286269.1| ATP dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220977584|gb|EED95910.1| ATP dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 1191

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 14/96 (14%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHF--CGARD---GLVHISQLSTERVAKTSDV-VKEGDTVW 671
           ++ +I++G V +V+DFG  V F   G  +   G+VH++ ++  R+ K  D   + G +V+
Sbjct: 225 QLYQIFRGTVQRVLDFGIVVDFNVPGNSEKASGMVHLTHVTKNRIEKPKDAGFRPGQSVY 284

Query: 672 VKLLDFDDRGK--------IKLSMKVVDQNTGKPIV 699
           VKL+    RG         + LS+K VDQ++GK ++
Sbjct: 285 VKLISIGKRGASAGAGEGGLMLSLKDVDQSSGKDLM 320


>gi|195496098|ref|XP_002095549.1| GE22455 [Drosophila yakuba]
 gi|194181650|gb|EDW95261.1| GE22455 [Drosophila yakuba]
          Length = 328

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R+   + G+L    GS+    G+T+ + +V       E    S           + NF  
Sbjct: 48  RNTFIRAGVLTTVRGSAYMEYGNTKVLAIV---APPKELIRASARRMNMGVLNCYVNFAA 104

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            ATG++  +     RE   G +  +A+ PV+ +T    + L I   I + DG      + 
Sbjct: 105 FATGDLDSVPE---RERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAIN 161

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKD 469
              +AL++ G+     +      + +D
Sbjct: 162 CCGVALVECGISTYDLITASTACIYRD 188



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VLA V   + L            L        +A G +           
Sbjct: 62  GSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFATGDLDS--------V 113

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +  M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 114 PERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 173

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               +  +          +NP    ++
Sbjct: 174 TYDLITASTACIYRDHVFINPSAKVEE 200


>gi|320013046|gb|ADW07895.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 503

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA-FVHFCGARDGLV 647
           D   V  A          R+     T  P   ++  G V +   FG  FV   G  +G +
Sbjct: 312 DTDGVVRARWRTEPTPEDRKWAFLKTLQP--GQVVTGTVTETASFGVTFVDVDGY-EGFI 368

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
           +I +LS   VA  +DVV  G  +   +L  D  R ++ LS++ V  + 
Sbjct: 369 NIPELSWRSVAHPADVVSVGQRIHAGVLGVDGVRAQMALSLRAVQDDP 416



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFV---HFCGARDGLVH 648
            V    + +A    A +         +V     G+V K++ FG FV          GLVH
Sbjct: 397 GVDGVRAQMALSLRAVQDDPMQQLTGQVGTTLPGRVTKIVPFGVFVRIEEIENGFAGLVH 456

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            S+L   +  +    ++ G T+ VK+LD D    +I LS +  D  
Sbjct: 457 NSELLGRQEKEPQGGIEVGSTLRVKILDVDLGSRRITLSQRQADPE 502


>gi|227432139|ref|ZP_03914149.1| RNA binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352100|gb|EEJ42316.1| RNA binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 153

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
               R       V +  KG++  +  +GAFV       GL+HIS+  +  V   +  +K 
Sbjct: 19  IIKHRGKIMKYSVGQKLKGRITGIQPYGAFVSLDDHTQGLIHISECKSGIVRDLNGELKV 78

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVD 691
           G  V + ++D +   GKI LS++  +
Sbjct: 79  GKEVNIVIMDIEQYNGKISLSLRQDE 104


>gi|296111290|ref|YP_003621672.1| polyribonucleotide nucleotidyltransferase (putative) [Leuconostoc
           kimchii IMSNU 11154]
 gi|295832822|gb|ADG40703.1| polyribonucleotide nucleotidyltransferase (putative) [Leuconostoc
           kimchii IMSNU 11154]
          Length = 125

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               + +  +G++  +  +GAFV       GL+HIS+  +  V    + +  G  V V +
Sbjct: 1   MTYHIGQELEGRITGIQPYGAFVVLNDHTQGLIHISECKSGIVQDLKNELCVGKKVKVTV 60

Query: 675 LDFDD-RGKIKLSMKVVD 691
           LD +   GKI LS++  +
Sbjct: 61  LDIEQYTGKISLSLRQDN 78


>gi|115438028|ref|NP_001043440.1| Os01g0589000 [Oryza sativa Japonica Group]
 gi|53792249|dbj|BAD52882.1| 30S ribosomal protein S1-like [Oryza sativa Japonica Group]
 gi|113532971|dbj|BAF05354.1| Os01g0589000 [Oryza sativa Japonica Group]
 gi|215704693|dbj|BAG94321.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 438

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           +    +T + E   + +G V K+  +GA V   G  R GL+HIS +S  RV   SD++K 
Sbjct: 276 KKAWEMTYLKEG-TLLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKI 334

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            + V V ++  +   KI LS+  ++   G
Sbjct: 335 DEEVKVLVVKSNVPDKIALSISDLESTPG 363


>gi|71415718|ref|XP_809916.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
 gi|70874370|gb|EAN88065.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
          Length = 229

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 64/227 (28%), Gaps = 12/227 (5%)

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
             + VR     + +L + H S+    G+T+ I  V       +Q VD   G+ R      
Sbjct: 9   TPDGVRYPHIALDVLGQCHSSACVELGNTRVICAV----HHPQQLVDEYRGS-RGRVACT 63

Query: 378 YNFLPCATGEVSRMGAPSRR--EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
                 A    +    PS    E             V+         + +V EI   DG 
Sbjct: 64  VRRSASAGSHAAGSAQPSVVTPEKDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGG 123

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
              A     S AL+  G  +    +     L+ DG    ++ D    E+        V  
Sbjct: 124 VWDAVATSMSAALVSGGFEMYDLFSACGSALLSDG---AVVLDPDAAEESNAQASALVCL 180

Query: 496 T--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
                 I   +        +   +V +  +    R   +        
Sbjct: 181 MLNSGDICYARHQGSCEPGTVLELVSSAMKGCLSRKSAITTQLINHP 227


>gi|323456999|gb|EGB12865.1| hypothetical protein AURANDRAFT_19250 [Aureococcus anophagefferens]
          Length = 1074

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG---ARDGLVH 648
               +    A   A R         PE++ IY G+V KV +FGAFV   G    R+GLVH
Sbjct: 84  RGPPSPECGAARAAPRARPPPRGGDPELHAIYAGRVTKVAEFGAFVALEGPTPPREGLVH 143

Query: 649 ISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +S +S   R    +  V     V+VK+L      ++ LSM+  DQ TG  +
Sbjct: 144 VSMISGDGRARDAARAVARDQRVFVKVLGVAGS-RVSLSMRECDQATGADL 193


>gi|302841757|ref|XP_002952423.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
           nagariensis]
 gi|300262359|gb|EFJ46566.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
           nagariensis]
          Length = 247

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 18/183 (9%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE-QYVDSLSG 368
              R  GR    +R +  +  +L R  GS+ + +  +  +  V  G R+ + Q  D+   
Sbjct: 12  GSSRARGRLPTQLRTLVCERSVLDRADGSAKWTQEGSSVLAAV-YGPRQAKPQKEDA--- 67

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
            ++    + Y             G   R         R  +  V+P       ++ +V +
Sbjct: 68  -EQAVVEVVY------KPRAGLQGHEDRT---FELEVRGILEGVIPLGMYPRTSIMVVLQ 117

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + + DG+     +  +  AL+DAG+ ++   A +   L ++     +L D    E+    
Sbjct: 118 VLQGDGAVLSCALNAACAALVDAGIAMTSMYASVTCVLTEEE---RLLLDSDAAEEQAAK 174

Query: 489 MDF 491
             F
Sbjct: 175 ACF 177


>gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis
           KIN4/I]
 gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis
           KIN4/I]
          Length = 276

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 37/246 (15%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  +  R+D R  +  R I   +G+  + HGS+L   G+T+ +  V     + E      
Sbjct: 22  LAKRGTRIDKRRLDQYRPIKITLGVGGKAHGSALVEIGNTKVLAGV-----KVEVGKPFK 76

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP--VLPQTAQFPY--- 421
                    ++   LP A+ E    G P    I   R+  RA+    V+           
Sbjct: 77  DVPDAGVLNVNAELLPLASSEFEP-GPPDENAIELARVIDRALREPGVIDLKELVLIPGE 135

Query: 422 ---TLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
               + +   + + DG+   A++  S  AL+D   P                 ++++  D
Sbjct: 136 KVLVVWLDVYVLDHDGNLFDASMLASMAALLDTRYP-----------------EYVVRED 178

Query: 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKI---GGISENIMVM---ALQQAKRGRLHIL 532
            S + D        +A     +T   ++        + E ++          +RGRL  L
Sbjct: 179 GSVEVDEANKRPLPIANKVVSVTLNVLENLFMVDPTLEEEVVADGKIVFAFDERGRLVGL 238

Query: 533 NEMSKV 538
            +    
Sbjct: 239 QKSGPA 244



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVG 71
           RP+K+  G   + + G+ L   G T VLA V  +  +  KD  D   L VN +    A  
Sbjct: 38  RPIKITLGVGGK-AHGSALVEIGNTKVLAGVKVEVGKPFKDVPDAGVLNVNAELLPLASS 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIR 100
           +   G       P EN I ++R+IDR++R
Sbjct: 97  EFEPGP------PDENAIELARVIDRALR 119


>gi|119491098|ref|ZP_01623256.1| conserved hypothetical ATP-binding protein [Lyngbya sp. PCC 8106]
 gi|119453643|gb|EAW34803.1| conserved hypothetical ATP-binding protein [Lyngbya sp. PCC 8106]
          Length = 1150

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            P+   +Y G V  +   GA+V F     G V  ++L   R+ +    V  G  V VK+ 
Sbjct: 374 KPKQGNVYSGYVTSLTSGGAYVEFLPDTQGFVPTNKLVDRRIERPEQAVSVGQKVVVKVY 433

Query: 676 DFDDRGKIKLS 686
             + R +I+L+
Sbjct: 434 SINSRDEIELT 444


>gi|332519231|ref|ZP_08395698.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lacinutrix algicola 5H-3-7-4]
 gi|332045079|gb|EGI81272.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lacinutrix algicola 5H-3-7-4]
          Length = 706

 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           ++  G V  + +FG FV       GL+H+S LS   V   ++ V     V VK+L+ D  
Sbjct: 637 QLLPGIVNNITNFGCFVDVGIKESGLIHVSNLSDSFVKDVNEHVHLHQQVIVKVLEVDVS 696

Query: 680 RGKIKL 685
           R +I+L
Sbjct: 697 RKRIQL 702


>gi|149634560|ref|XP_001512041.1| PREDICTED: similar to programmed cell death 11 [Ornithorhynchus
           anatinus]
          Length = 1836

 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G   ++        A    +       +   ++ G V  +MD+G FV       GL    
Sbjct: 690 GRNILSRKPALICAAEEGQVARYFFDIQPGMLFTGYVTSIMDYGVFVELPFGFTGLSPRV 749

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            +S + V KT D    G TV   + D D ++ ++ LS+++ D
Sbjct: 750 AISDKFVTKTQDHYTVGQTVTALVTDVDEEKQRMLLSLRLSD 791



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD- 676
           +  ++ +G+V+ +  FG  V    +  G+V +  L+  ++         GD +  ++L  
Sbjct: 451 QPGQLVQGKVLALRPFGVLVEVTDSIKGVVPLLHLADVQLKHPEKKFHLGDEIKGRVLSC 510

Query: 677 FDDRGKIKLSMKVVDQNTGKPIV 699
                K+ L++K    N+  P++
Sbjct: 511 IPSMKKLVLTLKKTLVNSDLPVI 533


>gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma
           acidophilum]
          Length = 240

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 90/244 (36%), Gaps = 22/244 (9%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +    R+DGR  +  R+++     + R +GS+    G+T+ +  V +   E   + D+  
Sbjct: 1   MKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEP--FPDT-- 56

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI--------HPVLPQTAQF 419
              +     +   LP A       G P+   I   R+  R I          ++ +  + 
Sbjct: 57  -PDQGVLTTNVELLPIAFPSFEA-GPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKK 114

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP--------ISKPVAGIAMGLVKDGD 471
            + + +   + + DG+   A+   +  AL +A VP           PV+   + +     
Sbjct: 115 VWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGEDFKLPVSSTPISVTMVKI 174

Query: 472 DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
              ++ D S +ED +      V  T+ G        +IG  +   +  A++ +      +
Sbjct: 175 GDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQKGEIGAFTVEDVKKAVKMSLEVGKKL 234

Query: 532 LNEM 535
             + 
Sbjct: 235 REKY 238



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 36/228 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R L +    I R ++G+     G T V+A V         D  D   LT N +    A  
Sbjct: 16  RELTIIENYIPR-ANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFP 74

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNE-------TQVIINVMQHD 121
               G       P +  I +SR++DR IR    +  +    E         + INV+ +D
Sbjct: 75  SFEAGP------PNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVLDYD 128

Query: 122 LESSPHVVSMVAASAALMLSGLP--------FEGPVV----GAQVDYINGQYVLNPRLDE 169
             +     S +AA AAL  + +P        F+ PV        +  I    V +P L+E
Sbjct: 129 G-NLID-ASTIAAVAALRNAVVPASKEGGEDFKLPVSSTPISVTMVKIGDTLVCDPSLEE 186

Query: 170 DQ-GSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
           DQ     + V+ T+D  +  M + E    + + V  A+       K +
Sbjct: 187 DQICGGRITVTTTEDGHIRAMQKGEIGAFTVEDVKKAVKMSLEVGKKL 234


>gi|6323885|ref|NP_013956.1| Rrp5p [Saccharomyces cerevisiae S288c]
 gi|2498865|sp|Q05022|RRP5_YEAST RecName: Full=rRNA biogenesis protein RRP5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein RRP5; Short=U3
            snoRNA-associated protein RRP5
 gi|887610|emb|CAA90200.1| Rrp5p [Saccharomyces cerevisiae]
 gi|285814233|tpg|DAA10128.1| TPA: Rrp5p [Saccharomyces cerevisiae S288c]
          Length = 1729

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 501  TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE-----FTPRVEI 555
            T + +D +   I  + +  A  + +  + H   +  +++      + +     +  R   
Sbjct: 1143 TVLSVDEQNKKIELS-LRPATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201

Query: 556  MAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
              +P  ++ +  +    K  + +    G  V  D+D  +  + +           +    
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI--SLTLRESEINGDLKVLKTY 1259

Query: 615  DVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
               +   +++G +  V DFG FV         GL HI++++ ++    S +   GD V  
Sbjct: 1260 SDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKA 1319

Query: 673  KLLDFDDRGK-IKLSMKV 689
             +L  +   K I LS+K 
Sbjct: 1320 IVLKTNPEKKQISLSLKA 1337



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           VNI+D+         ++  E A+ +           +++K         G  + F G   
Sbjct: 584 VNIEDNE-----LPLVSTYENAKNIKEKNEKTLATIQVFK-------PNGCIISFFGGLS 631

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G +  S++S   V +  + ++ G TV VKLLD D DR +I  + KV ++   +
Sbjct: 632 GFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD--VPEVNKIY--KGQV 627
           K +R   E TG  ++ D    V   S   + I+ A++    +T   V ++NK       +
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYI 801

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLS 686
             + D G FV F G   GLV  S     R    S       +V V LL  DD+  K  LS
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLS 861

Query: 687 MKV 689
           +K 
Sbjct: 862 LKA 864


>gi|295100873|emb|CBK98418.1| Ribosomal protein S1 [Faecalibacterium prausnitzii L2-6]
          Length = 311

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ D++G      S        +          +   I    V  +  FGAF        
Sbjct: 90  IDTDENGQTVYRLSRAEAQRMCKAEYLDQ---LQPGDILPCIVTHIEPFGAFCDVGCGIS 146

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            L+ I  +S  R++  +D V  G  +   +   D +G+  L+++ +
Sbjct: 147 ALLPIDCMSVSRISSPADRVSVGQQILCAIKSRDAQGRFVLTIREL 192


>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
           kamchatkensis 1221n]
          Length = 286

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 49/299 (16%)

Query: 281 SEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSL 340
            +       ++ ++ + I+             R+DGR     R I   +  + +  GSSL
Sbjct: 6   EKEPLLPRIQVENIVKSIKK----------GERIDGRGLTDYRPIEVILNPITKASGSSL 55

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
              G TQ I  V L    +E + D           +H  F+P A+      G P    I 
Sbjct: 56  VKLGGTQVIAGVKL--ELEEPFPDR---PGEGVLQVHAEFVPLASPSFEP-GPPDENAIE 109

Query: 401 HGRLARRAIH--------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAG 452
             R+  R++          +  +  +  +++     + +  G+     +  S LAL  + 
Sbjct: 110 VARVIDRSLRESKAVKLDALAIEPGKIVWSVYTDIYLVDHQGNIIDTGMLASMLALATSR 169

Query: 453 V---------------------PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
           +                     PI+  VA + MG+  D    +I+ D   +E+ +     
Sbjct: 170 IPELIKGENGYKVDHTKYVGPLPINTLVATVTMGIYND----VIIVDPLLEEEAVIDSFI 225

Query: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
            +A  +SG         + G S +++   ++ A      +++ M K+L+     +    
Sbjct: 226 TIAIDESGRICGIQKRGMKGFSRSVLDNTIEIALSKGRELVDLMKKILNNPSEYMKPLV 284



 Score = 37.6 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 42/191 (21%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYA 69
           RP+++    I + + G+ L   G T V+A V     L++     P    L V+ +    A
Sbjct: 38  RPIEVILNPITK-ASGSSLVKLGGTQVIAGV--KLELEEPFPDRPGEGVLQVHAEFVPLA 94

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQVIINVMQ----HD 121
                 G       P EN I ++R+IDRS+R               +++ +V       D
Sbjct: 95  SPSFEPGP------PDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVYTDIYLVD 148

Query: 122 LESSPHVVSMVAASAALMLSGLP---------------FEGP------VVGAQVDYINGQ 160
            + +     M+A+  AL  S +P               + GP      V    +   N  
Sbjct: 149 HQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVTMGIYNDV 208

Query: 161 YVLNPRLDEDQ 171
            +++P L+E+ 
Sbjct: 209 IIVDPLLEEEA 219


>gi|302764282|ref|XP_002965562.1| hypothetical protein SELMODRAFT_6138 [Selaginella moellendorffii]
 gi|300166376|gb|EFJ32982.1| hypothetical protein SELMODRAFT_6138 [Selaginella moellendorffii]
          Length = 169

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 16/99 (16%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKT--SDVVKE------ 666
           +PE+  I +G+V  V  FG FV   G R  GLVH+SQ+S   V +   SD VK       
Sbjct: 9   LPELYSICRGRVHSVKPFGLFVRLEGYRAHGLVHLSQVSNHEVTQREDSDEVKMQALAAI 68

Query: 667 ---GDTVWVKLLDF----DDRGKIKLSMKVVDQNTGKPI 698
              G+ +WVK++      D   KI  SMK+V Q  G+ +
Sbjct: 69  AGQGEEIWVKIIAVRREEDGSVKIGCSMKLVGQTDGRDL 107


>gi|193652700|ref|XP_001948203.1| PREDICTED: exosome complex exonuclease RRP46-like [Acyrthosiphon
           pisum]
          Length = 211

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +  Q+G L  T GS+   +G +   V V +G  E                   Y+     
Sbjct: 6   LKCQLGFLGNTEGSAYLSQGKSTVSVSV-VGPFEP------------KASKCMYDRATVD 52

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGS 444
                + G+ +  +     + +      L        T+ +  +  +  G+     +  S
Sbjct: 53  VTFRRKTGSITVHDKMLEGIMQSTCEKALVVEQYPRTTIVVTVQEMQDRGNLLSTCLNAS 112

Query: 445 SLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
            + LM++G+ +    A ++   V + ++ I+  D +     + ++    A T++    + 
Sbjct: 113 CMGLMNSGIAMHHLYAAVSCA-VTEKEEIILNPDETQINSSVAYLTLVFANTET--RCLL 169

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
                G  S+   +  + +       + N   KV+ +S +
Sbjct: 170 TSHTTGEFSQKTYMDCMDKCYAASKEVFNFYQKVIKKSSI 209



 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 15/200 (7%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTENE 88
           G+   + G++ V  +VV     K             +  Y    +   + R+    T ++
Sbjct: 18  GSAYLSQGKSTVSVSVVGPFEPKAS-----------KCMYDRATVDVTFRRKTGSITVHD 66

Query: 89  ILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGP 148
            ++  ++  +            T +++ V +     +     + A+   LM SG+     
Sbjct: 67  KMLEGIMQSTCEKALVVEQYPRTTIVVTVQEMQDRGNLLSTCLNASCMGLMNSGIAMHHL 126

Query: 149 VVGAQVDYING-QYVLNPRLDEDQGS---LDLFVSGTQDAVLMVELEANQLSEDVVLDAI 204
                       + +LNP   +   S   L L  + T+   L+      + S+   +D +
Sbjct: 127 YAAVSCAVTEKEEIILNPDETQINSSVAYLTLVFANTETRCLLTSHTTGEFSQKTYMDCM 186

Query: 205 IFGHNECKPVIEAISKLAKM 224
              +   K V     K+ K 
Sbjct: 187 DKCYAASKEVFNFYQKVIKK 206


>gi|167619837|ref|ZP_02388468.1| transcription accessory protein, TEX [Burkholderia thailandensis
           Bt4]
          Length = 751

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728

Query: 692 QNTGKP 697
                P
Sbjct: 729 DAAPSP 734


>gi|312076508|ref|XP_003140893.1| hypothetical protein LOAG_05308 [Loa loa]
 gi|307763947|gb|EFO23181.1| hypothetical protein LOAG_05308 [Loa loa]
          Length = 264

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 4/182 (2%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R I  Q G L    G+     G T+ I  V  G +E  +  D ++ T+   ++   N   
Sbjct: 35  RSIVMQTGALHDQKGTVYVEFGSTKIICSVD-GPKEITKSAD-VNPTEGQVYVFLKNIST 92

Query: 383 -CATGEVSRMGAPSRREI-GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
                  S   + S +EI G       A+  ++         + +   +   DG    A+
Sbjct: 93  EGNAVSGSNSSSVSNKEINGTRNAVESALRSIVCLELFCKAQIDVEITVLNDDGGVLAAS 152

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           +  SSLAL+D+G+ +        + ++ DG   +  S  S     +   +     T   +
Sbjct: 153 LIASSLALVDSGIQVYDVCVAAHIVMLTDGRIIVDPSTNSYPFSSIPDSEEFSGNTHLSV 212

Query: 501 TA 502
           T 
Sbjct: 213 TV 214



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS--------LKDGQDFFPLTVNYQE 65
           R + ++TG +  Q  G V   +G T ++ +V   +           +GQ +  L     E
Sbjct: 35  RSIVMQTGALHDQ-KGTVYVEFGSTKIICSVDGPKEITKSADVNPTEGQVYVFLKNISTE 93

Query: 66  RTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLE 123
                G        +E   T N +        ++R +       K +  V I V+  D  
Sbjct: 94  GNAVSGSNSSSVSNKEINGTRNAVES------ALRSIVCLELFCKAQIDVEITVLNDDGG 147

Query: 124 SSPHVVSMVAASAALMLSGLP-FEGPVVGAQVDYINGQYVLNPR 166
                 S++A+S AL+ SG+  ++  V    V   +G+ +++P 
Sbjct: 148 VLA--ASLIASSLALVDSGIQVYDVCVAAHIVMLTDGRIIVDPS 189


>gi|297579432|ref|ZP_06941360.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           RC385]
 gi|298498048|ref|ZP_07007855.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MAK
           757]
 gi|297537026|gb|EFH75859.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           RC385]
 gi|297542381|gb|EFH78431.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MAK
           757]
          Length = 191

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +  G V  V   GA +      +G +  S++S +R+   S ++  G
Sbjct: 74  DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 133

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
           D V  K    D + + I LS+K  D+   + ++
Sbjct: 134 DKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVM 166



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV--VKEGDTVWVKLLDFD-D 679
             G++  + DFG F+   G  DGLVH+S +S   V     V   K+GD +   +L  D +
Sbjct: 2   VTGKIKSITDFGIFIGLEGGIDGLVHLSDISWN-VPGEEAVREFKKGDEISAVVLAVDAE 60

Query: 680 RGKIKLSMKVVDQNT 694
           R +I L +K ++ + 
Sbjct: 61  RERISLGIKQMENDP 75


>gi|302891949|ref|XP_003044856.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
 gi|256725781|gb|EEU39143.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
          Length = 1773

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAF--VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            +  ++  G+V KV DFGAF  V       GL H SQ++ + VA  + + KEGD V  ++L
Sbjct: 1282 KEGQVVTGKVRKVEDFGAFILVDNSDNISGLCHRSQMAEKPVADATKLYKEGDAVKARIL 1341

Query: 676  DFD-DRGKIKLSMK 688
            + D  + +I   +K
Sbjct: 1342 EIDTKKRRISFGLK 1355



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   S         + +G V  V D G FV   G   GLV IS LS   +    D  + 
Sbjct: 1182 KDKEISNISHVNPGDLVRGFVKNVSDKGLFVLLGGQVTGLVKISNLSDRYLKDWKDNFQV 1241

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK--VVDQNTGKPI 698
               V  +++  D +  +++LS+K  +VDQ+   P+
Sbjct: 1242 DQLVKARVIAVDREAKRVELSLKSSIVDQDYTPPL 1276



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V     G +VK+   GA + F G   G + IS++S   +    +  + G  V V +LD +
Sbjct: 626 VGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQVVSVHVLDVE 685

Query: 679 D 679
            
Sbjct: 686 P 686



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            G  +       GLV    LS  ++       + G  +  ++L  +  + +++L++K   
Sbjct: 551 SGLILKIAEGITGLVPEQHLSDIKLQNPEKKFRPGMKIKARVLSTNLVKNQMRLTLKKTL 610

Query: 692 QNTGKPIV 699
            N+  PI+
Sbjct: 611 VNSEAPII 618


>gi|83720619|ref|YP_442769.1| transcription accessory protein, TEX [Burkholderia thailandensis
           E264]
 gi|257138979|ref|ZP_05587241.1| transcription accessory protein, TEX [Burkholderia thailandensis
           E264]
 gi|83654444|gb|ABC38507.1| transcription accessory protein, TEX [Burkholderia thailandensis
           E264]
          Length = 775

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728

Query: 692 QNTGKP 697
                P
Sbjct: 729 DAAPSP 734


>gi|302308948|ref|NP_986113.2| AFR566Cp [Ashbya gossypii ATCC 10895]
 gi|299790870|gb|AAS53937.2| AFR566Cp [Ashbya gossypii ATCC 10895]
          Length = 1715

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 13/163 (7%)

Query: 546  LGEFTPRVEIMAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            +  +  R     +P  ++ +  I    K  + +   TG  VN + D  + +         
Sbjct: 1175 IFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKVVNCESDSRILLTMKESEVNG 1234

Query: 605  AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSD 662
              +  I       +   I+ G V  V DFG FV         GL H S++S  ++   S 
Sbjct: 1235 ELK--ILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNTLNVTGLAHKSEISDSKIDDLSL 1292

Query: 663  VVKEGDTVWVKLLDFD-DRGKIKLSMKV-------VDQNTGKP 697
            +  EGD V   +L  + ++ ++ L +K         D++  +P
Sbjct: 1293 LFGEGDKVKAIILKTNPEKNQVSLGLKASYFQKAHDDEDEAEP 1335



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
              I  + E +      V      G  V F G     +   ++S   V +  D ++ G T
Sbjct: 579 FEQIAKLAEEDGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRAQDHLRLGQT 638

Query: 670 VWVKLLD-FDDRGKIKLSMKVVDQNTGK 696
           V VK+L+    + K+ ++ KV  +++ K
Sbjct: 639 VVVKVLEHVAKQSKVIVTRKVSSEDSEK 666



 Score = 43.7 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%)

Query: 606  AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
            A +         +   + +G +  V D G FV+        V +S+L+   + +     K
Sbjct: 1146 ATDRYILSHKDLKQGDVVRGFIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYK 1205

Query: 666  EGDTVWVKLLDFDDRGKIKLSMKV 689
                +  K+++ +   +I L+MK 
Sbjct: 1206 TMQPITGKVVNCESDSRILLTMKE 1229



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 606  AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV- 664
            AR+   +     +V      ++VKV D    +       G+  ++    E       V  
Sbjct: 1057 ARKHAITDIKDIKVADKLPARIVKVADSYLLLDLGNRLTGVAFVTDALNEFSLSLRSVYE 1116

Query: 665  -KEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             K G  +   ++  D +  KI LS++  D
Sbjct: 1117 DKIGSMILASVVGVDVENKKINLSLRTED 1145


>gi|330817153|ref|YP_004360858.1| RNA binding S1 [Burkholderia gladioli BSR3]
 gi|327369546|gb|AEA60902.1| RNA binding S1 [Burkholderia gladioli BSR3]
          Length = 777

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 18/186 (9%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            +        L          R  +     P VE M     +  + +      + G+   
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGL--- 605

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVV 628
                 +DD   +      L+E+E      R   ++ T    V K+         +G V 
Sbjct: 606 -APTEFVDDRFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLMPGMVLEGVVT 664

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
            V  FGAFV     +DGLVH+S +ST+ +    +VVK G  V VK+LD D  R +I L+M
Sbjct: 665 NVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRIALTM 724

Query: 688 KVVDQN 693
           ++ D+ 
Sbjct: 725 RMDDEP 730


>gi|255534058|ref|YP_003094430.1| RNA binding S1 domain-containing protein [Pedobacter heparinus DSM
           2366]
 gi|255347042|gb|ACU06368.1| RNA binding S1 domain protein [Pedobacter heparinus DSM 2366]
          Length = 775

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V     G V  + +FGAFV     +DGLVH SQ+S + VA  +DVVK    V V +++ 
Sbjct: 635 KVGMKLPGIVTNITNFGAFVDIGVHQDGLVHTSQISDKFVANAADVVKVHQKVEVTVVEV 694

Query: 678 DD-RGKIKLSMK 688
           D  R +I LSMK
Sbjct: 695 DVARKRISLSMK 706


>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
           burtonii DSM 6242]
 gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
           DSM 6242]
          Length = 259

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 90/261 (34%), Gaps = 24/261 (9%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                 ++   +  + L K  R DGR  +  RD+  +  ++ +  GS+  + GDTQ +V 
Sbjct: 2   SEAISRLKKDYLFNLAL-KGQREDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVG 60

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V L                +   +      P A+      G P  + I   R+  R I  
Sbjct: 61  VKLQVGSP-----FADSADKGVIITSMELNPIASPNFEA-GPPREKAIEMARVVDRGIRE 114

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP--------- 454
                   +     +  + + I   +    G+   A   G+  ALM A +P         
Sbjct: 115 SGAIDLNKLCITEGEEVWIVFIDVHVLNDSGNLLDAASLGAIAALMTATIPGEREGRGED 174

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +  P+  + + L        ++ D + +E+ +  +   +     G          G +SE
Sbjct: 175 VKLPIREMPVSLSFIDIGGELVIDATNNEESVSDLRLTIVTNQDGSICAMQKSGPGTLSE 234

Query: 515 NIMVMALQQAKRGRLHILNEM 535
              + ++++++     I  E 
Sbjct: 235 ENFLRSVEKSREVGAKIREEY 255



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 39/230 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV---VYDRSLKDGQDFFPLTVNYQERTYAV 70
           R L +ET  I + ++G+     G+T VL  V   V      D  D   +  + +    A 
Sbjct: 32  RDLIIETNVIDK-AEGSAKVLLGDTQVLVGVKLQVGSPFA-DSADKGVIITSMELNPIAS 89

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQH 120
                G       P E  I ++R++DR IR       +K    E        + ++V+  
Sbjct: 90  PNFEAGP------PREKAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVFIDVHVLN- 142

Query: 121 DLESSPHVVSMVAASAALMLSGLP---------FEGPVVGAQVDY----INGQYVLNPRL 167
           D  +     + + A AALM + +P          + P+    V      I G+ V++   
Sbjct: 143 DSGNLLD-AASLGAIAALMTATIPGEREGRGEDVKLPIREMPVSLSFIDIGGELVIDATN 201

Query: 168 DEDQ-GSLDLFVSGTQDA-VLMVELEA-NQLSEDVVLDAIIFGHNECKPV 214
           +E+    L L +   QD  +  ++      LSE+  L ++         +
Sbjct: 202 NEESVSDLRLTIVTNQDGSICAMQKSGPGTLSEENFLRSVEKSREVGAKI 251


>gi|298244158|ref|ZP_06967964.1| Tex-like protein [Ktedonobacter racemifer DSM 44963]
 gi|297551639|gb|EFH85504.1| Tex-like protein [Ktedonobacter racemifer DSM 44963]
          Length = 773

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 13/132 (9%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR-SITDVPEVNK 621
           I   IG+G   +  I+E              K        + A          +  +   
Sbjct: 653 IAKQIGVGMPTLHDILENLE-----------KPGLDPRDALPAPILRHDVLKMEDLQPGM 701

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V+DFGAFV     +DGLVHIS+L+   V     VV  G  V V++L  D  R
Sbjct: 702 ILQGTVRNVVDFGAFVDIGVKQDGLVHISELAERFVKDPLTVVAVGQVVSVRVLSIDLKR 761

Query: 681 GKIKLSMKVVDQ 692
            +++LSM+   Q
Sbjct: 762 NRVQLSMRNAKQ 773


>gi|194902325|ref|XP_001980673.1| GG17562 [Drosophila erecta]
 gi|190652376|gb|EDV49631.1| GG17562 [Drosophila erecta]
          Length = 226

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R +  +   L R  GS ++ +G T  I  V LG  E +    S+ G+      +  N
Sbjct: 6   DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAV-LGPIEVKTQNLSIDGSY-----LECN 59

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A       G P  ++       R  +   L   A     + +  +  E  GS    
Sbjct: 60  YRPKA-------GLPQVKDRIREAAIRDVLELALLAEAHPRSKMSVQIQELEDRGSIDAC 112

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478
            +  + LA++  G+P+    A +   ++ +  ++++  D
Sbjct: 113 ALNCACLAMLIGGLPMKYSFAAVHC-IINEQGEYVLDPD 150



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E   ++R  DG+V+ + G T ++  V+    +K      D   L  NY+ +    
Sbjct: 9   RQMHCEFNPLSR-CDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG-- 65

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
             +P    R       + + ++ + +   R   S       Q+     + +   S    +
Sbjct: 66  --LPQVKDRIREAAIRDVLELALLAEAHPRSKMS------VQI----QELEDRGSIDACA 113

Query: 131 MVAASAALMLSGLPFEGPVVGAQ-VDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVL 186
           +  A  A+++ GLP +        +    G+YVL+P   E    + S    +   +  +L
Sbjct: 114 LNCACLAMLIGGLPMKYSFAAVHCIINEQGEYVLDPDQSETLHQRASFTFVLDSVEGNLL 173

Query: 187 MVELEA 192
           +V+ + 
Sbjct: 174 LVQTKG 179


>gi|172038374|ref|YP_001804875.1| RNA binding S1 protein [Cyanothece sp. ATCC 51142]
 gi|171699828|gb|ACB52809.1| probable RNA binding S1 protein [Cyanothece sp. ATCC 51142]
          Length = 718

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I +G +  V++FGAFV     +DGL+HISQL+   V+   +VVK G+ V VK+L+ D++
Sbjct: 648 MILEGVITNVVNFGAFVDIGVHQDGLIHISQLANYFVSDPKEVVKVGEVVKVKVLEIDEK 707

Query: 681 -GKIKLSMKVV 690
             +I LSMK V
Sbjct: 708 LKRISLSMKEV 718


>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
          Length = 218

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 18/215 (8%)

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ-RNDFMMHYNFLPCATGEV 388
            +     G + +  G+T+ +  +        Q    L  T  +          P    + 
Sbjct: 5   NISNDADGFAFYEIGNTKILSYI--------QGPTELKKTDDKCSIKCDVFLSPFNVYDK 56

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
            +               R     ++         + I   I E DG    A +    LAL
Sbjct: 57  RKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILAL 116

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG--TDSGITAMQMD 506
           +DAG+ I   ++  ++  +++     I+ D +  E + G  +  +        I  ++ D
Sbjct: 117 IDAGIAIKYFISACSVLYLQNK----IIVDGNQLEINSGSPELTMVIELNTHKIILLEFD 172

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            +   I  +I    +Q      ++I   M   + E
Sbjct: 173 AE---IPIDIFESMVQTCIDSCINIGRVMKLTVKE 204



 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 72/191 (37%), Gaps = 15/191 (7%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           +DG      G T +L+ +     LK   D   +  +     + V      Y +R+ +  +
Sbjct: 10  ADGFAFYEIGNTKILSYIQGPTELKKTDDKCSIKCDVFLSPFNV------YDKRKKKTKD 63

Query: 87  N-EILISRMIDRSIRP-LFSKCYKN-ETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
           N    IS  I       +    YKN E  + + +++ D        ++     AL+ +G+
Sbjct: 64  NITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKH--AAINTCILALIDAGI 121

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDEDQG---SLDLFVSGTQDAVLMVELEANQLSEDVV 200
             +  +    V Y+  + +++    E       L + +      ++++E +A ++  D+ 
Sbjct: 122 AIKYFISACSVLYLQNKIIVDGNQLEINSGSPELTMVIELNTHKIILLEFDA-EIPIDIF 180

Query: 201 LDAIIFGHNEC 211
              +    + C
Sbjct: 181 ESMVQTCIDSC 191


>gi|329666880|gb|AEB92828.1| hypothetical protein LJP_0494 [Lactobacillus johnsonii DPC 6026]
          Length = 123

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  I  G++  +  +G FV      +GL+HIS++    V       + G+T+ +++
Sbjct: 1   MQVKIGDIVHGKISGIQQYGIFVRLDSQIEGLIHISEIHGGYVKDIGREYQVGETIKIQV 60

Query: 675 LDFDD-RGKIKLSMKVVDQNTGK 696
           +D D    +I LS + V     +
Sbjct: 61  IDIDPYSNQISLSRRAVLPEVEE 83


>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
           PT]
 gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
           PT]
          Length = 257

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 94/260 (36%), Gaps = 24/260 (9%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            SV  +I+   +  ++L  + R DGR     R I  +  ++++  GS+L   G TQ +V 
Sbjct: 2   SSVISEIRKDYLYNLLLRGE-RADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVG 60

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           + +   E            R   + +   +P A+  +   G P+   I   R+  R +  
Sbjct: 61  IKIQPGEP-----FPDAPNRGVIVTNAELVPLASP-IFEPGPPNEYGIELARVVDRGVRE 114

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK------ 457
                   +     +  + + I   I +  G+   A+  G+  AL+ A VP S+      
Sbjct: 115 SGSVDLDALCIVPGEKVWIIFIDIHILDDCGNIMDASSLGAIAALLGATVPASRFGLGED 174

Query: 458 ---PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
              PV  I +         ++L D   DE+ +      V     G          G +SE
Sbjct: 175 FQLPVRDIPIATTAVEFGDVVLFDPDVDEEAIADAKLTVITKADGTICGMQKSGPGMLSE 234

Query: 515 NIMVMALQQAKRGRLHILNE 534
           + +   +  A      I  +
Sbjct: 235 DQVYRIVDIACDNAREIREK 254


>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
           maquilingensis IC-167]
 gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
          Length = 279

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 68/170 (40%), Gaps = 15/170 (8%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
            +   ++   +R ++ +   R D R   ++RD++ +VG+++   GS+L   G+T+ I  +
Sbjct: 7   EIIPSLRRDTLRRLISE-GKRPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGI 65

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
                  E            + +++    P A       G P    I   R+  RA+   
Sbjct: 66  KF-----ELGKPFEDTPNEGNLIVNLETPPLAAPTFEP-GPPDENAIEIARIIDRALRHS 119

Query: 413 --LPQTAQFP------YTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
             +P            Y++ +   +   DG+   +++  +  A+ +A VP
Sbjct: 120 NYIPLRDLVIIPGKSVYSMWVDIYVLNHDGNLIDSSMLAAVSAIANAQVP 169



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 57/217 (26%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVV------YDRSLKDGQDFFPLTVNYQERT 67
           R L +  G I + +DG+ L   G T V+A +       ++ +  +G     L VN +   
Sbjct: 36  RDLTIRVGVI-KTADGSALVNLGNTKVIAGIKFELGKPFEDTPNEGN----LIVNLETPP 90

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIR-----PL-----FSKCYKNETQVIINV 117
            A      G       P EN I I+R+IDR++R     PL               V I V
Sbjct: 91  LAAPTFEPGP------PDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMWVDIYV 144

Query: 118 MQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV-----------LNPR 166
           + HD  +     SM+AA +A+  + +P        +   I+G+ V           +NP+
Sbjct: 145 LNHDG-NLID-SSMLAAVSAIANAQVP--------R-AIIDGENVKLDKSTKIPLNINPQ 193

Query: 167 LDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDA 203
                   ++ ++ T   +    +    L E+V+ D 
Sbjct: 194 --------NMPLTVTYYKIDKYLIVDPTLEEEVMSDG 222


>gi|195330095|ref|XP_002031744.1| GM23883 [Drosophila sechellia]
 gi|194120687|gb|EDW42730.1| GM23883 [Drosophila sechellia]
          Length = 223

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 16/176 (9%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           +T+R +  +   L R  GS ++ +G T  I  V LG  E +    S+ G+      +  N
Sbjct: 6   DTLRQMHCEFNPLSRCDGSVMYSQGATGLIGAV-LGPIEVKTQNLSIDGSY-----LECN 59

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A       G P   +       R  +   L   A     + +  +  E  GS    
Sbjct: 60  YRPKA-------GLPQVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
            V  + LA++  G+P+    A +   ++ +  +++   D    E       F  A 
Sbjct: 113 AVNCACLAMLIGGLPLKYSFAAVH-AIINEQGEYV--LDPDQSETQHQRASFTFAF 165



 Score = 43.7 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E   ++R  DG+V+ + G T ++  V+    +K      D   L  NY+ +    
Sbjct: 9   RQMHCEFNPLSR-CDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG-- 65

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
             +P    R       + + ++ + +   R   S       Q+     + +   S    +
Sbjct: 66  --LPQVIDRIREAAIRDVLELALLSEAHPRSKMS------VQI----QELEDRGSIDACA 113

Query: 131 MVAASAALMLSGLPFEGPVVGA-QVDYINGQYVLNPRLDEDQ 171
           +  A  A+++ GLP +        +    G+YVL+P   E Q
Sbjct: 114 VNCACLAMLIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETQ 155


>gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium
           GSS1]
 gi|29336898|sp|Q97BZ4|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2
 gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1]
          Length = 260

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 97/263 (36%), Gaps = 23/263 (8%)

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            E   +  +I+   + T M     R+DGR  +  R+I+     + R +GS+    G T+ 
Sbjct: 3   KESAEILSEIRKNYILTTM-KGGKRIDGRLPDEFREITIIENYVPRANGSAYVALGKTRV 61

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA 408
           +  V +   E   + D+     +     +   LP A       G P+   I   R+  R 
Sbjct: 62  VAGVKIEAGEP--FPDT---PDQGVLTTNVELLPIAFPSFEA-GPPNDLAIEVSRVVDRG 115

Query: 409 IH--------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP------ 454
           I          ++ +  +  + + +   + + DG+   A    +  AL +A VP      
Sbjct: 116 IRESKMISPDKLVIEQGKKVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPASREGG 175

Query: 455 --ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
                PV    + +        ++ D S +ED +      V  T+ G        +IG  
Sbjct: 176 EDFKLPVVNTPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQKGEIGVF 235

Query: 513 SENIMVMALQQAKRGRLHILNEM 535
           + + +  A++ + +   +I  + 
Sbjct: 236 TLDDVKKAIKMSLKVGKNIREKY 258



 Score = 41.4 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 34/227 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R + +    + R ++G+     G+T V+A V         D  D   LT N +    A  
Sbjct: 36  REITIIENYVPR-ANGSAYVALGKTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFP 94

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---LFSKCYKNE-------TQVIINVMQHD 121
               G       P +  I +SR++DR IR    +       E         + INV+ +D
Sbjct: 95  SFEAGP------PNDLAIEVSRVVDRGIRESKMISPDKLVIEQGKKVWIVFLDINVLDYD 148

Query: 122 LESSPHVVSMVAASA-------ALMLSGLPFEGPV----VGAQVDYINGQYVLNPRLDED 170
             +     ++ A SA       A    G  F+ PV    +   +  I    V +P L+ED
Sbjct: 149 G-NLIDACTIAAVSALRNAIVPASREGGEDFKLPVVNTPISVTMVKIGDTLVCDPSLEED 207

Query: 171 Q-GSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
           Q     + V+ T+D  +  M + E    + D V  AI       K +
Sbjct: 208 QICGGRITVTTTEDGHIRAMQKGEIGVFTLDDVKKAIKMSLKVGKNI 254


>gi|261366983|ref|ZP_05979866.1| ribosomal protein S1 [Subdoligranulum variabile DSM 15176]
 gi|282571100|gb|EFB76635.1| ribosomal protein S1 [Subdoligranulum variabile DSM 15176]
          Length = 302

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 25/184 (13%)

Query: 513 SENIMVM---ALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
           +  I+     A     R R  I                 + P  E +A+ P +    I +
Sbjct: 27  TGEILQSTALAYDNEHRLRFEICGHRG------------YMPHEECLAVGPGEEIKDIAV 74

Query: 570 GGKVIR---GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
             +V R    I+  T A+ N ++          L+   A R+  R   D  E   +    
Sbjct: 75  LTRVGRPTCFIITGTAAEENGEE-------VYLLSRAAAQRQCRREYLDTLEPGSVIPCT 127

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLS 686
           V  + +FGAF         L+ I  LS  R++  +D V+ G  +   + + D +G+I L+
Sbjct: 128 VTHIENFGAFCDIGCGISALLPIDCLSVSRISSPNDRVQVGQQLLCAIKNRDLQGRIVLT 187

Query: 687 MKVV 690
           ++ +
Sbjct: 188 LREL 191


>gi|310789617|gb|EFQ25150.1| S1 RNA binding domain-containing protein [Glomerella graminicola
            M1.001]
          Length = 1772

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  +N+ D    ++  S  A +              +  +I  G+V KV +FGAF+    
Sbjct: 1251 GRVINV-DAAINQVELSLKASVVENDYTPPVTYKDMKEGQIVTGKVRKVEEFGAFIVVDN 1309

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
                 GL H S+++ + V     +  EGD V  K+L  DD + +I  S++
Sbjct: 1310 SLNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKVLSVDDEKRRITFSLR 1359



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV     G +      GA + F G   G + +SQ+S   +    +  + G  V V +L
Sbjct: 624 EVEVGMQTPGTITSFTAGGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRIGQAVSVHVL 683

Query: 676 DFDDRGK 682
           D +   +
Sbjct: 684 DVNPEER 690



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
             I +G V  V D G FV   G    LV IS LS   +       +    V  ++++ D  
Sbjct: 1200 DIIRGFVKNVTDKGVFVQLGGTVSALVKISNLSDRYIKDWKGNFQVDQLVKGRVINVDAA 1259

Query: 681  -GKIKLSMKV 689
              +++LS+K 
Sbjct: 1260 INQVELSLKA 1269



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 617 PEVNKIYKGQVVKVMD-----FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
             V ++  G+V KV+       G  V       G VH S L+  ++       +EG TV 
Sbjct: 531 VPVGEVVSGKVEKVIIGENGVSGLIVKLAEGISGYVHDSHLADVKLQHPEKKFREGITVK 590

Query: 672 VKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
            ++L    R + ++L++K    N+  PIV
Sbjct: 591 ARVLSVRPRKRQLRLTLKKTLVNSDAPIV 619



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 625  GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
            G+V KV D    V    +  G VH+  LS       +    +G+ + V +++ D    ++
Sbjct: 1110 GRVTKVTDRSVMVKLGDSVSGPVHLVDLSDNYDEANTLKYNKGEIIRVSVVEVDKSNKRL 1169

Query: 684  KLSMK 688
            +LS +
Sbjct: 1170 RLSTR 1174


>gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625  GQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G++ +V  FG F+        GL HISQLS +R+       K G++V  K+L  D ++ +
Sbjct: 1309 GRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKR 1368

Query: 683  IKLSMK 688
            I L MK
Sbjct: 1369 ISLGMK 1374



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K+ + D     +A SS   +    E + S  +  + N +  G V  +++ G FV F G 
Sbjct: 586 DKLLVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGR 645

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             G    S+   +  A  S+    G +V   ++D + ++ +I LS+K 
Sbjct: 646 LTGFAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQ 693



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           +  G + K+   G FV F     G V   +L  E  +    V   G+ V  ++       
Sbjct: 449 VTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGT 508

Query: 681 GKIKLS 686
            +I LS
Sbjct: 509 QRITLS 514



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 621  KIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             I  G++ K++    G  V       G VH ++++   V    D  +EG  V  K+L+  
Sbjct: 1106 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS 1165

Query: 679  DRGK----IKLSMKV 689
               K    I+LS++ 
Sbjct: 1166 SSSKGTWQIELSLRT 1180



 Score = 41.8 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E         +   + K +V+ V  FGA V F G    +  +  +S   V K     K
Sbjct: 346 AFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFK 405

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            G  +  ++L      +I ++ K     +  PI+
Sbjct: 406 VGAELVFRVLGC-KSKRITVTYKKTLVKSKLPIL 438



 Score = 41.1 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 623  YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             +G V   M  G F+      +  V +S L    V +       G  V  ++L+ +    
Sbjct: 1217 VQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSK 1276

Query: 682  KIKLSMKVVDQNTGKP 697
            +I++++K V+   G+P
Sbjct: 1277 RIEVTLKTVN-AGGRP 1291


>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
 gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
          Length = 259

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 296 EDIQAKVVRTVM---LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +DI A+V R  +   +    R+DGR  + +R I  Q G++++  GS+L   G+TQ +V V
Sbjct: 3   DDILAEVRRDYVLSKIRDGERIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGV 62

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA---- 408
            +   E            +   + +   +P A+      G P    I   R+  R     
Sbjct: 63  KMQPGEP-----FPDAPNKGIIITNAELVPLASPTFEP-GPPDENAIELARVVDRGIRES 116

Query: 409 ----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKP 458
               +  +  +  +  + + I     + DG+   A+  G+  AL++  VP  + 
Sbjct: 117 EAVDLEKLCIEEGEKVWLIFIDIWALDDDGNLLDASALGAIAALLNTTVPAERF 170



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 33/234 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF--FPLTVNYQERTYAVG 71
           R ++++TG I + ++G+ L   G T VL  V     ++ G+ F   P           V 
Sbjct: 33  RKIEIQTGVIEK-AEGSALVKLGNTQVLVGV----KMQPGEPFPDAPNKGIIITNAELVP 87

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ----VIINVMQHDLE 123
                +      P EN I ++R++DR IR        K    E +    + I++   D +
Sbjct: 88  LASPTFE--PGPPDENAIELARVVDRGIRESEAVDLEKLCIEEGEKVWLIFIDIWALDDD 145

Query: 124 SSPHVVSMVAASAALMLSGLP---------FEGPVVGAQVD----YINGQYVLNPRLDED 170
            +    S + A AAL+ + +P         F  PV    V      +  + +++P  DE 
Sbjct: 146 GNLLDASALGAIAALLNTTVPAERFEVGDDFPLPVRDLPVAITSLIVENKILVDPIKDET 205

Query: 171 QGSLDL--FVSGTQDAVLMVELEANQ-LSEDVVLDAIIFGHNECKPVIEAISKL 221
             + +     + ++D ++ ++   +  L E+   +AI     + + V + ++++
Sbjct: 206 SVAKNFLTITTDSEDNIVAIQKSGSYLLPEEKFYEAIELSIRKAREVRKLLAEV 259


>gi|149038199|gb|EDL92559.1| rCG51656 [Rattus norvegicus]
          Length = 252

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 11/169 (6%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           ++      RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E        
Sbjct: 23  EEDETPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGGGP 81

Query: 369 TQ---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                      R   +  +   P + G   R    S  +   G   + A+ P +      
Sbjct: 82  AGAGGEAPAALRGRLLCDFRRAPFS-GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYP 140

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK 468
              L + + + E  GS+  A +  ++LAL DAGV +   V G  + L  
Sbjct: 141 RAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLTP 189


>gi|17232741|ref|NP_489289.1| hypothetical protein alr5249 [Nostoc sp. PCC 7120]
 gi|17134388|dbj|BAB76948.1| alr5249 [Nostoc sp. PCC 7120]
          Length = 719

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I  ITD+ E  ++ +G V  V +FGAFV     +DGLVHISQL+   V     VVK 
Sbjct: 634 KEGITEITDLQEGMEL-EGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKKVVKV 692

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQ 692
           G  V V++L+ + +  +I LSMK V Q
Sbjct: 693 GQVVKVRVLEVNAKLRRISLSMKAVKQ 719


>gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
 gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  ++ D       AS          ++         V  I  GQV +V  FG FV    
Sbjct: 1364 GRVLSTDPSSGRVEASLRKTTGSKLEKLDDISYSDLHVGDIIDGQVKRVESFGLFVTIRR 1423

Query: 642  AR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
            +   GL H+S+LS E V   +   K GD V  K+L  D+ R ++ L MK
Sbjct: 1424 SELVGLCHVSELSDEPVVDINSCYKAGDMVKAKILKIDEKRHRVSLGMK 1472



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G +  +++ G FV F G   G     +    R+ + SD    G +V   +L    + 
Sbjct: 721 VVHGYICNIIESGCFVRFLGHLTGFSPKDKAVDRRIERLSDAFYVGQSVRSHILSVTAET 780

Query: 681 GKIKLSM 687
            ++KLS+
Sbjct: 781 ARVKLSL 787



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    +  ++  + +     ++  +  G + K+   G FV F     G V  S L  E  
Sbjct: 545 TYKKSLVKSKLDVLASYADAKIGLVTHGWITKIEKHGCFVKFYNGVQGFVSRSDLGLEAG 604

Query: 658 AKTSDVVKEGDTVWVKLLDF 677
            +  +V   G  V  ++++ 
Sbjct: 605 TEAENVYHVGQVVKCRIINV 624



 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 603  IEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKT 660
            I+  ++   S+ +  +   I  G+V K++    G  V       G VH +++    V + 
Sbjct: 1188 IDEIQQSKSSVFEQTKQGDIIGGRVQKILPGVGGLVVQIGPHLRGRVHYTEIVDSWVTEP 1247

Query: 661  SDVVKEGDTVWVKLLDFDDRG----KIKLSMK 688
                 EG  V  K+L          ++ LS++
Sbjct: 1248 LSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLR 1279



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 609  MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
             I  I D+    +I KG V  V   G F+      +  + +S LS E V         G 
Sbjct: 1302 RIEKIKDLLPGTEI-KGYVKNVNSKGCFIMISRMVEARITLSNLSDEYVENPQKDFPVGM 1360

Query: 669  TVWVKLLDFDD-RGKIKLSMK 688
             V  ++L  D   G+++ S++
Sbjct: 1361 LVHGRVLSTDPSSGRVEASLR 1381



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVV 664
           A E      D  +   + + +V  V  FGA V F      L  +  +S  E V K     
Sbjct: 465 AFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKF 524

Query: 665 KEGDTVWVKLLD 676
           K G  +  ++L 
Sbjct: 525 KVGAELLFRVLG 536


>gi|218188557|gb|EEC70984.1| hypothetical protein OsI_02634 [Oryza sativa Indica Group]
          Length = 408

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           +    +T + E   + +G V K+  +GA +   G  R GL+HIS +S   V   SD++K 
Sbjct: 246 KKAWEMTYLKEG-TLLQGIVRKIFPYGAQIRIAGTNRSGLLHISNISRGSVLSVSDILKI 304

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            D V V ++  +   KI LS+  ++   G
Sbjct: 305 DDEVKVLVVKSNVPDKIALSISDLESTPG 333


>gi|34849374|gb|AAP58873.1| ribosomal protein S1 [Spiroplasma kunkelii CR2-3x]
          Length = 111

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
                  +  K++  +V  +  FGAF     A  GL+HIS++S   V    + V  GD V
Sbjct: 1   MWRIMYVKGKKVF-AKVTNITPFGAFCELKNAA-GLIHISEISDYYVRDIKEFVNIGDNV 58

Query: 671 WVKLLDFDD-RGKIKLSMK 688
            V++LD+D  + ++KLS K
Sbjct: 59  EVEVLDYDPVKKQVKLSYK 77


>gi|282858144|ref|ZP_06267339.1| S1 RNA binding domain protein [Pyramidobacter piscolens W5455]
 gi|282584066|gb|EFB89439.1| S1 RNA binding domain protein [Pyramidobacter piscolens W5455]
          Length = 719

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E      G V  V  FGAFV+    +DGLVH+SQ+    V   S V+  G  V V ++D 
Sbjct: 636 EPGMKLPGIVSNVTAFGAFVNIGVHQDGLVHVSQMG-RYVKDISTVLHPGMAVEVYVIDV 694

Query: 678 D-DRGKIKLSM 687
           D  R +I L M
Sbjct: 695 DVKRRRISLRM 705


>gi|88811403|ref|ZP_01126658.1| hypothetical protein NB231_11729 [Nitrococcus mobilis Nb-231]
 gi|88791292|gb|EAR22404.1| hypothetical protein NB231_11729 [Nitrococcus mobilis Nb-231]
          Length = 759

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            I +G V  V  FGAFV     +DGLVHIS ++   V    +V + GD V V+++  D +
Sbjct: 654 MILEGVVTNVTSFGAFVDIGVHQDGLVHISAMAEHFVRDPREVARTGDVVKVRVVSVDLE 713

Query: 680 RGKIKLSMK 688
           R +I LSM+
Sbjct: 714 RSRIGLSMR 722


>gi|260578962|ref|ZP_05846865.1| histidine triad domain-containing protein [Corynebacterium jeikeium
           ATCC 43734]
 gi|258602936|gb|EEW16210.1| histidine triad domain-containing protein [Corynebacterium jeikeium
           ATCC 43734]
          Length = 759

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TV 670
                 +   + +G V  V  FGAFV     +DGLVH+S +S + V    DVV  G+   
Sbjct: 634 ETIKDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSEQFVKDPHDVVSSGEVVK 693

Query: 671 WVKLLDFDDRGKIKLSMKVVDQN 693
              +     R +I LS+++ D+ 
Sbjct: 694 VRVVDVDVPRNRIGLSLRLQDEP 716


>gi|47900418|gb|AAT39212.1| putative 30S ribosomal protein S1 [Oryza sativa Japonica Group]
          Length = 590

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 546 LGEFTPRVEIMAIPPD--QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L  F P+ E+M  P +   ++N +G    V    +++   ++ I +              
Sbjct: 298 LRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEK------------- 344

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD 662
                   ++T + E   + +G V K+  +GA +      R GL+H+S ++  ++    D
Sbjct: 345 -----EAWAMTYLREG-TLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGD 398

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V+K G+ V   ++     G+I LS K ++   G
Sbjct: 399 VLKVGEEVKAIVIKSTAPGRIALSTKDLESEPG 431


>gi|240255326|ref|NP_187803.4| RNA binding [Arabidopsis thaliana]
 gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana]
          Length = 1896

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625  GQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G++ +V  FG F+        GL HISQLS +R+       K G++V  K+L  D ++ +
Sbjct: 1440 GRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKR 1499

Query: 683  IKLSMK 688
            I L MK
Sbjct: 1500 ISLGMK 1505



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K+ + D     +A SS   +    E + S  +  + N +  G V  +++ G FV F G 
Sbjct: 690 DKLLVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGR 749

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             G    S+   +  A  S+    G +V   ++D + ++ +I LS+K 
Sbjct: 750 LTGFAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQ 797



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           +  G + K+   G FV F     G V   +L  E  +    V   G+ V  ++       
Sbjct: 564 VTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGT 623

Query: 681 GKIKL--SMK 688
            +I L  S+K
Sbjct: 624 QRITLNDSIK 633



 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 621  KIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             I  G++ K++    G  V       G VH ++++   V    D  +EG  V  K+L+  
Sbjct: 1237 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS 1296

Query: 679  DRGK----IKLSMKV 689
               K    I+LS++ 
Sbjct: 1297 SSSKGTWQIELSLRT 1311



 Score = 41.4 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E         +   + K +V+ V  FGA V F G    +  +  +S   V K     K
Sbjct: 461 AFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFK 520

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            G  +  ++L      +I ++ K     +  PI+
Sbjct: 521 VGAELVFRVLGC-KSKRITVTYKKTLVKSKLPIL 553



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 623  YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             +G V   M  G F+      +  V +S L    V +       G  V  ++L+ +    
Sbjct: 1348 VQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSK 1407

Query: 682  KIKLSMKVVDQNTGKP 697
            +I++++K V+   G+P
Sbjct: 1408 RIEVTLKTVN-AGGRP 1422


>gi|167587066|ref|ZP_02379454.1| RNA binding S1 [Burkholderia ubonensis Bu]
          Length = 640

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 14/169 (8%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIG-----MGGKVIRGIVEQTG--AKVN 586
           + S V  E+   +     ++        +I +V+G      G      + E+ G     +
Sbjct: 434 DRSSVHPEAYPVVERILAKIS------KRIDDVLGSREALAGLSPAEFVDERFGLPTVRD 487

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +              A                I +G V  V  FGAFV     +DGL
Sbjct: 488 ILSELEKPGRDPRPEFKTATFREGVEKVSDLVPGMILEGVVTNVAAFGAFVDVGVHQDGL 547

Query: 647 VHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQNT 694
           VH+S LST+ +    +VVK G       L     R +I L+M++ D  T
Sbjct: 548 VHVSALSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDDDAT 596


>gi|302802588|ref|XP_002983048.1| hypothetical protein SELMODRAFT_6137 [Selaginella moellendorffii]
 gi|300149201|gb|EFJ15857.1| hypothetical protein SELMODRAFT_6137 [Selaginella moellendorffii]
          Length = 163

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 16/99 (16%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKT--SDVVKE------ 666
           +PE+  I +G+V  V  FG FV   G R  GLVH+SQ+S   V +   SD VK       
Sbjct: 9   LPELYSICRGRVHSVKPFGLFVRLEGYRAHGLVHLSQVSNHEVTQREDSDEVKMQALAAI 68

Query: 667 ---GDTVWVKLLDF----DDRGKIKLSMKVVDQNTGKPI 698
              G+ +WVK++      D   KI  SMK+V Q  G+ +
Sbjct: 69  AGQGEEIWVKIIAVRREEDGSVKIGCSMKLVGQTDGRDL 107


>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
           gammatolerans EJ3]
 gi|259645408|sp|C5A2B8|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
 gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
           protein (Rrp42p) [Thermococcus gammatolerans EJ3]
          Length = 273

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 99/274 (36%), Gaps = 34/274 (12%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +I A ++R  +L+   +  R+DGR  E  RDI  + G +++  GS+    G T+ +V   
Sbjct: 5   EIMAGIMRDRILNLLKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLV--- 61

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA----- 408
            G + D           R     +   +P A+      G P  R I   R+  R      
Sbjct: 62  -GIKVDVGEP-FPDLPDRGVMTTNVELVPLASPTFEP-GPPDERAIELARVIDRGIRESQ 118

Query: 409 ---IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK-------- 457
              +  ++    +    + I   + + DG+   AT   +  ALM   +P  +        
Sbjct: 119 AVELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEI 178

Query: 458 ---------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                    PV  + + +        I+ D + DE+ +      +   ++G  +     +
Sbjct: 179 IKLDEYEPLPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQKGE 238

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            G      ++ A+  A +    +   + + +  +
Sbjct: 239 GGSFKLEEVMYAIDTALKKADELRKILLEAVGSA 272



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 83/245 (33%), Gaps = 45/245 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLAT--VVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R ++++TG I + ++G+     G T VL    V       D  D   +T N +    A  
Sbjct: 34  RDIEIKTGFIEK-AEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASP 92

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
               G       P E  I ++R+IDR IR           +          + ++V+ HD
Sbjct: 93  TFEPGP------PDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFIDVHVLDHD 146

Query: 122 LESSPHVVSMVAASAALMLSGLP---FEGPVVG------------------AQVDYINGQ 160
             +      + AA AALM + +P   +                             I   
Sbjct: 147 G-NLFDATGL-AAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVTFAKIGSS 204

Query: 161 YVLNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
            +++P LDE+      L +    T     + + E      + V+ AI     +   + + 
Sbjct: 205 IIVDPNLDEETVMDSRLTITTDETGHISAVQKGEGGSFKLEEVMYAIDTALKKADELRKI 264

Query: 218 ISKLA 222
           + +  
Sbjct: 265 LLEAV 269


>gi|68536262|ref|YP_250967.1| putative transcriptional accessory protein [Corynebacterium
           jeikeium K411]
 gi|68263861|emb|CAI37349.1| putative transcriptional accessory protein [Corynebacterium
           jeikeium K411]
          Length = 756

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TV 670
                 +   + +G V  V  FGAFV     +DGLVH+S +S + V    DVV  G+   
Sbjct: 631 ETIKDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSEQFVKDPHDVVSSGEVVK 690

Query: 671 WVKLLDFDDRGKIKLSMKVVDQN 693
              +     R +I LS+++ D+ 
Sbjct: 691 VRVVDVDVPRNRIGLSLRLQDEP 713


>gi|224146056|ref|XP_002325863.1| predicted protein [Populus trichocarpa]
 gi|222862738|gb|EEF00245.1| predicted protein [Populus trichocarpa]
          Length = 145

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
           GL HIS+L++  + K  DV K GD V VKL+  +++G+++LS K +    
Sbjct: 1   GLCHISELTSNWLPKAEDVFKVGDRVDVKLIKVNEKGQLRLSRKALLPEA 50


>gi|259419235|ref|ZP_05743152.1| protein YhgF [Silicibacter sp. TrichCH4B]
 gi|259345457|gb|EEW57311.1| protein YhgF [Silicibacter sp. TrichCH4B]
          Length = 781

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLD 676
           +   + +G V  V  FGAF+     +DGLVH+SQL+ + V    ++VK G       +  
Sbjct: 647 KPGMVLEGTVTNVAAFGAFIDIGVHQDGLVHVSQLADKFVKDPHEIVKTGQVVKVTVVEV 706

Query: 677 FDDRGKIKLSMKVVDQNTGKP 697
              R +I L+MK     + + 
Sbjct: 707 DVPRKRIGLTMKKDGGASARD 727


>gi|110004212|emb|CAK98550.1| conserved hypothetical protein yabr [Spiroplasma citri]
          Length = 107

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
            +V  +  FGAF     A  GL+HIS++S   V    + V  GD+V V++LD+D  + ++
Sbjct: 10  AKVTNITPFGAFCELKNAA-GLIHISEISDYYVRDIKEFVNIGDSVEVEVLDYDPVKKQV 68

Query: 684 KLSMK 688
           KLS K
Sbjct: 69  KLSYK 73


>gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
 gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
          Length = 270

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 29/255 (11%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L++  R+DGR  +  R ++ +   + +  GS+    G T  +  V +            
Sbjct: 18  LLERGERIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDVVTGVKVQPDRP-----FP 72

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQTAQ 418
               R  F+     LP A  +V   G PS   I   R+  R I          ++    +
Sbjct: 73  DVGDRGIFICTAEILPLAHPDVE-TGPPSPAVIELARVVDRGIRESGMVDLSKLVLLKDK 131

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---ISK------------PVAGIA 463
               +   S + + DG+   A    ++ A++ A +P   I              PV  I 
Sbjct: 132 SVIGIFADSSVIDVDGNLFDACSYAATAAILTAKLPKWEIQDEAPVRIEGETPVPVTTIP 191

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           + +     +  IL D + DE  +      +     G           G +   +V   + 
Sbjct: 192 VSVTMAKINGHILVDPNQDEWAVMDARITITTNSDGNICALQKGGNSGFTHAELVKCGEI 251

Query: 524 AKRGRLHILNEMSKV 538
           + R    I   + + 
Sbjct: 252 SVRVGADIREIIKRA 266


>gi|298709770|emb|CBJ31572.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 453

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
              V+ +D   +K          A R   +   D+ E  +I  G +V+V++FG FV    
Sbjct: 275 DPNVSAEDLRRMKNEVQKKKSKFARR---KETGDLVEGEEIL-GGIVRVLEFGFFVDVGA 330

Query: 642 ARDGLVHISQLS---TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
             +GLVHIS +S      +   ++    GD ++V++   D+ G++ L
Sbjct: 331 KANGLVHISSISEKENRYLDNLNEFASVGDKMYVRVNGVDEEGRLSL 377


>gi|254252272|ref|ZP_04945590.1| RNA binding S1 [Burkholderia dolosa AUO158]
 gi|124894881|gb|EAY68761.1| RNA binding S1 [Burkholderia dolosa AUO158]
          Length = 841

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 13/120 (10%)

Query: 586 NIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDF 633
            +D+   +      LAE+E      R   ++ T    V K+         +G V  V  F
Sbjct: 677 FVDERFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLVPGMLLEGVVTNVAAF 736

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           GAFV     +DGLVH+S +ST+ +    +VVK G  V VK+LD D  R +I L+M++ D+
Sbjct: 737 GAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDDE 796


>gi|328859073|gb|EGG08183.1| hypothetical protein MELLADRAFT_105134 [Melampsora larici-populina
           98AG31]
          Length = 285

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 19/226 (8%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
                R DGR ++  R I  +  ++   +GSS     D + I  V  G +       + +
Sbjct: 45  KQDNTRSDGRTNQQFRPIHVKTKVVSSANGSSYLETTDCKLICAV-YGPK-----PRTTA 98

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVS 427
            +  ++  +H+ F P +          +  E    +   +++ P L       Y L +  
Sbjct: 99  NSSSSNLNIHFKFTPFSLSTSFTSSISTL-ESNLSQALHQSLAPSLLLNPTEFYDLHL-- 155

Query: 428 EITESDGSSSMA-TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--D 484
            + +S    S+   +  +++AL  AGVP    V GI+  +  D +   +L D +  E  +
Sbjct: 156 TVLQSHSPLSITHPILAATIALGSAGVPTLGLVIGISAAISSDLE---LLIDPTFIESQN 212

Query: 485 HLGHMDFKVAGTDSGITAM----QMDMKIGGISENIMVMALQQAKR 526
            L H+D     +   +T +     +D  +  I  N  +  L  A+ 
Sbjct: 213 ALAHLDLSYLTSIDSVTHLNFRSHLDFNLSKIDLNQFLTYLDLARD 258


>gi|302691292|ref|XP_003035325.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
 gi|300109021|gb|EFJ00423.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
          Length = 259

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 19/232 (8%)

Query: 316 GRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFM 375
           GR    +R I  + GL+ + +GS+ +I  D   I     G R+++      + +++    
Sbjct: 36  GRGELDIRPIFLRPGLISQANGSA-YIEADKIKIACAVYGPRQNKNV----AYSEQGRLN 90

Query: 376 MHYNFLPCATGEVS-RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG 434
           +   + P AT      +     R IG      +A+   +        T+ I   I E+DG
Sbjct: 91  VEVKYAPYATARRKAPLRDAEDRSIGVA--IHQALLASVRLELLPKSTVDIFLVIIEADG 148

Query: 435 --SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
             +S  +    +S AL DAG+ +   V+  +  +  D     I  D S  E         
Sbjct: 149 KEASIASGAVAASAALADAGIEMLGLVSSCSAAVTGDK----IWLDPSAAESEQADGTVI 204

Query: 493 VAGTD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           ++       +T++      G +     +  +   ++  + I + +++ L E 
Sbjct: 205 LSCMPALDSVTSVWQS---GRLPPQKALECMHACQQKCVDIHSVVAQALLEH 253


>gi|195379434|ref|XP_002048484.1| GJ13996 [Drosophila virilis]
 gi|194155642|gb|EDW70826.1| GJ13996 [Drosophila virilis]
          Length = 329

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R    + G+L    GS+    G+T+ + +V       E    S           + NF  
Sbjct: 46  RSTFIRAGVLTTVRGSAYMEYGNTKVLAIV---APPRELVRSSARRVNMGVINCYVNFAA 102

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            A+GE+  +     RE   G +  +A+ P++ +     + L I   I + DG      + 
Sbjct: 103 FASGELESVPE---REKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAIN 159

Query: 443 GSSLALMDAGVPISKPVAGIAMGL 466
              +AL++ G+     +      +
Sbjct: 160 CCGVALIECGISTYDLITASTACI 183



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFFPLT----VNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VLA V   R L                     +A G++       ES P
Sbjct: 60  GSAYMEYGNTKVLAIVAPPRELVRSSARRVNMGVINCYVNFAAFASGEL-------ESVP 112

Query: 85  TENEILISRMIDRSIRPLFSKCYKNE---TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            E E  +  M+ +++ PL     +NE    Q+ I V+  D +      ++     AL+  
Sbjct: 113 -EREKHLGSMLTKALEPLV---CRNEFLNFQLDIRVLILDDDGCLLSTAINCCGVALIEC 168

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           G+     +  +      G   +NP    ++
Sbjct: 169 GISTYDLITASTACIYRGYVFVNPSAKVEE 198


>gi|289621121|emb|CBI51904.1| unnamed protein product [Sordaria macrospora]
          Length = 1776

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 616  VPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            + E   I  G+V KV +FGAF+   G     GL H S++S + V     + +EGD V  K
Sbjct: 1285 LKEGQTI-TGRVRKVEEFGAFIDIDGSDNLSGLCHRSEMSDKAVKDARKLYEEGDKVKAK 1343

Query: 674  LLDFDDR-GKIKLSMK 688
            +L  D    +I L +K
Sbjct: 1344 VLKVDATAKRINLGLK 1359



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           G ++ V+  GA V F G   G + +S++S   +    +  + G TV + ++ FD 
Sbjct: 631 GTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVISFDP 685



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++         EV +I +G V  V D G FV   G     V I  LS   +    +  + 
Sbjct: 1188 KDKEIVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQV 1247

Query: 667  GDTVWVKLLDFDDRGKIKLSMK--VVDQN 693
               V  +++   + G+I++S+K  VVD++
Sbjct: 1248 DQLVKGRIVSVAN-GRIEMSLKPSVVDKD 1275



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  V       GLV     +   +       +EG  V  ++L  D   + I+L++K    
Sbjct: 551 GLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLV 610

Query: 693 NTGKPIV 699
           N+  P +
Sbjct: 611 NSDLPAI 617



 Score = 37.2 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 622  IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
            I  G+V KV +    V       G VH   L+ +          + + V V +++ D   
Sbjct: 1109 ILVGKVTKVDERQVIVKLSETLAGPVHKVDLADDYEEANPAKFAKNEIVRVAVVEVDKSN 1168

Query: 681  GKIKLSMK 688
             +I+LS +
Sbjct: 1169 KRIRLSTR 1176


>gi|224014598|ref|XP_002296961.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968341|gb|EED86689.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 357

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 13/149 (8%)

Query: 402 GRLARRAIHPVLPQTA-QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
               + A+ P +     +    + +  ++ +SDG    A V G+SLAL+DAGV +   V 
Sbjct: 203 SHRLQEALAPAVVLMDNENKMCIEVFVQVLQSDGGVFGAAVMGASLALVDAGVGMRDVVC 262

Query: 461 GIAMGLVK---DGD--------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
           G +  ++K   +GD         ++ ++D S DE         +A   +       D + 
Sbjct: 263 GSSAAVMKVVEEGDGAKNGTKSKYVAIADPSEDEILQASGVVTIAIMPNWREVTVWD-QF 321

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKV 538
           G +       A++ A+ G + +   + K 
Sbjct: 322 GKMPVESSQEAMELAREGCVTMHKFLKKC 350


>gi|195571989|ref|XP_002103983.1| GD18693 [Drosophila simulans]
 gi|194199910|gb|EDX13486.1| GD18693 [Drosophila simulans]
          Length = 223

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 16/176 (9%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           ET+R ++ +   L R  GS ++ +G T  I  V LG  E +    S+ G+      +  N
Sbjct: 6   ETLRQMNCEFNPLSRCDGSVMYSQGATGLIGAV-LGPIEVKTQNLSIDGSY-----LECN 59

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A       G P   +       R  +   L   A     + +  +  E  GS    
Sbjct: 60  YRPKA-------GLPQVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
            V  + LA++  G+P+    A +   ++ +  +++   D    E       F  A 
Sbjct: 113 AVNCACLAMLIGGLPLKYSFAAVH-AIINEQGEYV--LDPDQSETQHQRASFTFAF 165



 Score = 43.7 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E   ++R  DG+V+ + G T ++  V+    +K      D   L  NY+ +    
Sbjct: 9   RQMNCEFNPLSR-CDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG-- 65

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
             +P    R       + + ++ + +   R   S       Q+     + +   S    +
Sbjct: 66  --LPQVIDRIREAAIRDVLELALLSEAHPRSKMS------VQI----QELEDRGSIDACA 113

Query: 131 MVAASAALMLSGLPFEGPVVGA-QVDYINGQYVLNPRLDEDQ 171
           +  A  A+++ GLP +        +    G+YVL+P   E Q
Sbjct: 114 VNCACLAMLIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETQ 155


>gi|300858740|ref|YP_003783723.1| hypothetical protein cpfrc_01323 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686194|gb|ADK29116.1| hypothetical protein cpfrc_01323 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331003|gb|ADL21197.1| Putative transcriptional accessory protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 767

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 30/150 (20%)

Query: 572 KVIRGIVEQTGAKVN-----------------IDDDGTVKIASSSLAEIEAAREMIR--- 611
            V+R I E+TG  V+                  DD   V   +  LAE++      R   
Sbjct: 562 PVVRRIAEETGLSVDGLIGNTAVLKTLRPRDFADDHFGVPTVTDILAELDKPGRDPRPEF 621

Query: 612 ---------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
                              I +G V  V  FGAFV     +DGLVH+S L+   V+    
Sbjct: 622 ATATFKEGVEKISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALAETFVSDPHY 681

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           VV+ G  V VK++D D +R +I LSMK+ D
Sbjct: 682 VVRSGQVVKVKVMDVDPERKRISLSMKLSD 711


>gi|304316816|ref|YP_003851961.1| RNA binding S1 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778318|gb|ADL68877.1| RNA binding S1 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 362

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 77/187 (41%), Gaps = 12/187 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +++  +  A +        I+  +   +    L +  F P      +    + N+    G
Sbjct: 91  LAKEKLDTAYKNGNILSGKIIEIIKGGVLADILGVKAFIPAS---QLDIHYVNNLNDYLG 147

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + ++  +      ++   +  +  +   + E E  ++    +  + E  ++ +G V  + 
Sbjct: 148 ENVKVKI------IDYIPNKKLIASQKVVLEEEKLKKKEELLKTLQEG-QVIQGVVKSIT 200

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            FGAF+   G  DGL+ +S++S  R    +D++  G+ V   +   D + K+ LS++ + 
Sbjct: 201 KFGAFIDI-GGIDGLIPLSEISWVRNKNINDILHIGEKVDAYVERID-KEKVTLSLRKLI 258

Query: 692 QNTGKPI 698
            +    I
Sbjct: 259 PDPWTTI 265



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 11/136 (8%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           IP  +I  V       I  I E+  A V   D   V ++   L       +   +I+   
Sbjct: 215 IPLSEISWVRNKNINDILHIGEKVDAYVERIDKEKVTLSLRKLIP-----DPWTTISAKF 269

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G++V +  FG FV      +GLVH S L    +    +  + G+ + V++L+ 
Sbjct: 270 KVGDVILGKIVNITTFGIFVDISDGVEGLVHKSDL----LKNIKEY-RIGENISVEILNI 324

Query: 678 DDRGKIKLSMKVVDQN 693
           D   K K+S++ +D+N
Sbjct: 325 DTNNK-KMSLREIDKN 339



 Score = 38.4 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           M     ++     I KG+++K++  G         D  V   QLS +     +     GD
Sbjct: 5   MDEYSFNLIHAGDIVKGKIIKILSDGIIADISYKADAYVPKDQLSLDPNLDINKFFNVGD 64

Query: 669 TVWVKLLDFDDRG 681
            + + ++  +D  
Sbjct: 65  EIDLYIVKREDEN 77


>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 271

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 91/255 (35%), Gaps = 45/255 (17%)

Query: 301 KVVRTVMLDK---KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV--VTLG 355
           K+++  + +      R+D R+    R I     ++++ HGS+L   G T+ +    V +G
Sbjct: 9   KIMKNKIYELLKIGKRIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVG 68

Query: 356 TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI------ 409
           T   ++            F ++   LP A  +    G P  R I   R+  R I      
Sbjct: 69  TPYPDR-------PNEGVFTVNAELLPLA-SKTFEPGPPDERAIELSRIVDRVIRESKAI 120

Query: 410 --HPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG------ 461
               +     Q  Y + I   + + DG+   A+V  +  AL    +P+ + V G      
Sbjct: 121 EVEKLCIVEGQKVYMIFIDCYVLDYDGNYFDASVLSAVAALRTMTLPVYRVVDGRVEAVP 180

Query: 462 --------------IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
                         + M L++D     I+ D    E+ +      +     G+ +     
Sbjct: 181 GEKMKLPMRTLPVSVTMALIRDK----IIVDPLPAEEDVADTVVTIGYDSDGVLSAIQKS 236

Query: 508 KIGGISENIMVMALQ 522
             G +  N+    ++
Sbjct: 237 SPGLLPVNMFKEMVK 251



 Score = 44.5 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 33/206 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVL----ATVVYDRSLKDGQDFFPLTVNYQERTYA 69
           R +++ T  + + + G+ L + G+T +L      V      +  +  F  TVN +    A
Sbjct: 34  RKIEIATNVVEK-AHGSALVSLGKTKILTGIKVEVGTPYPDRPNEGVF--TVNAELLPLA 90

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ------VIINVMQ 119
                 G       P E  I +SR++DR IR        K    E Q      +   V+ 
Sbjct: 91  SKTFEPGP------PDERAIELSRIVDRVIRESKAIEVEKLCIVEGQKVYMIFIDCYVLD 144

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVS 179
           +D        S+++A AAL    LP    V G +V+ + G+ +  P          + ++
Sbjct: 145 YDGN--YFDASVLSAVAALRTMTLPVYRVVDG-RVEAVPGEKMKLPMRTLPVS---VTMA 198

Query: 180 GTQDAVLMVELEANQLSEDVVLDAII 205
             +D +++  L A    E+ V D ++
Sbjct: 199 LIRDKIIVDPLPA----EEDVADTVV 220


>gi|225181236|ref|ZP_03734681.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168016|gb|EEG76822.1| RNA binding S1 domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 713

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 128/363 (35%), Gaps = 45/363 (12%)

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGA---PSRREIGH 401
           +T AI   T G   +E   + +S   R       N    +    S++G    P       
Sbjct: 372 NTVAIGNGTAGRESEEFIAEVISEMNREIEYTVVNEAGASVYSASKLGKVEFPDLDVAER 431

Query: 402 GR--LARRAIHPVLPQTAQFPYTLRI-----------VSEITESDGSSSMATVCGSSLAL 448
               +ARR   P+       P ++ +           + E+    G     TV    + L
Sbjct: 432 SAISIARRVQDPLAELVKIDPRSIGVGQYQHDVNQKRLEEVL---GGVVEDTVNQVGVDL 488

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFI-ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
             A  P+   VAGI   +  +   +          ++ L       A        +++  
Sbjct: 489 TTASAPLLGRVAGINKTIAANIVAYREEHGTFKAKKELLKVAKLGPAAFKQSAGFLRIPD 548

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
               +  + +     Q  +  + I+      L + +              I   +    +
Sbjct: 549 ADNYLDRSAVHPESYQVAQKLIDIMEIDHSDLGKPQAIP----------QINIKETAADL 598

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKG 625
            +G   ++ IVE+             K       ++     ++ +  + D+ E  ++  G
Sbjct: 599 EVGEPTLQDIVEEFK-----------KPGRDPREDVPKPVFKKGVLHLEDLQEGMEL-TG 646

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV     +DGL+HISQLS + V    +VV+ GD V VK++  D  + +I 
Sbjct: 647 VVRNVVDFGAFVDIGVHQDGLIHISQLSDKFVKHPLEVVQVGDVVEVKVISLDVKKKRIG 706

Query: 685 LSM 687
           L+ 
Sbjct: 707 LAR 709


>gi|302206447|gb|ADL10789.1| Transcriptional accessory protein tex, N-terminal domain protein
           [Corynebacterium pseudotuberculosis C231]
 gi|308276689|gb|ADO26588.1| Transcriptional accessory protein tex, N-terminal domain protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 767

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 30/150 (20%)

Query: 572 KVIRGIVEQTGAKVN-----------------IDDDGTVKIASSSLAEIEAAREMIR--- 611
            V+R I E+TG  V+                  DD   V   +  LAE++      R   
Sbjct: 562 PVVRRIAEETGLSVDGLIGNTAVLKTLRPRDFADDHFGVPTVTDILAELDKPGRDPRPEF 621

Query: 612 ---------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
                              I +G V  V  FGAFV     +DGLVH+S L+   V+    
Sbjct: 622 ATATFKEGVEKISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALAETFVSDPHY 681

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           VV+ G  V VK++D D +R +I LSMK+ D
Sbjct: 682 VVRSGQVVKVKVMDVDPERKRISLSMKLSD 711


>gi|159163363|pdb|1WHU|A Chain A, Solution Structure Of The Alpha-Helical Domain From Mouse
           Hypothetical Pnpase
          Length = 104

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 226 AKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSS 285
             + I   S +  K   ++  M K     + +  +K  R + ++ ++     +   +   
Sbjct: 7   GPQKIFTPSAEIVKYT-KIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPE 65

Query: 286 WNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318
            ++ EI+  F  +  +V R+++L++  R DGRD
Sbjct: 66  VDQFEIIESFNIVAKEVFRSIILNEYKRCDGRD 98


>gi|255083945|ref|XP_002508547.1| predicted protein [Micromonas sp. RCC299]
 gi|226523824|gb|ACO69805.1| predicted protein [Micromonas sp. RCC299]
          Length = 768

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL----STERVAKTSDVVKEGDTVWVK 673
           +V  + +G V  V+ FGAFV       GLVH S +       R  +  +V+  G  V V+
Sbjct: 649 KVGDVLEGAVRNVVPFGAFVDVGVGVSGLVHKSNMRGGNDKGRAPEPHEVLSAGQAVRVR 708

Query: 674 LLDFD-DRGKIKLSM 687
           ++  D  R +I L++
Sbjct: 709 VMSVDAQRNRIGLAL 723


>gi|150864479|ref|XP_001383313.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
 gi|149385735|gb|ABN65284.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
          Length = 289

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 86/272 (31%), Gaps = 58/272 (21%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
              + R+DG     +R    + G+++  +GSS    G+   I V   G R        + 
Sbjct: 29  SKTEPRIDG-----LRPFFLKTGIIENANGSSYLEVGN-NIIEVSVYGPRP-------IR 75

Query: 368 GT--QRNDFMMHYNFLPC---------------------ATGEVSRM--GAPSRREIGH- 401
           G+   R  F +   FLP                       T + +    G      I H 
Sbjct: 76  GSFIDRASFSVECKFLPFISQPNEHLYNNTSISASSAANTTNQTNVNVNGRTGLTSIEHK 135

Query: 402 -GRLARRAIHPVLPQTAQFPYTLRIVSEITESD---GSSSMAT---------VCGSSLAL 448
                  ++ P +        T+ +   I  +D   G S   T         +  SS+AL
Sbjct: 136 ISSYIETSLLPSIVLEKYPKSTIDVFVTIISTDSSLGGSYSDTKMLSLVNWVLNASSVAL 195

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT---DSGITAMQM 505
           +D+G+ +   V     G+    +D ++L      E   G +    +     +  I  + +
Sbjct: 196 VDSGIEVKDVV---TSGVAHLQNDVLVLDPTEIQEKDEGSVSCVASFMNLRNDEIVGIWI 252

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +     +  + +   L         +   ++ 
Sbjct: 253 EGDQTNLENSQVDHLLDGCNDMSKKVRANINS 284



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 34/193 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----------DFFPLTVNY 63
           RP  L+TG I   ++G+     G  ++  +V   R ++              F P     
Sbjct: 39  RPFFLKTGII-ENANGSSYLEVGNNIIEVSVYGPRPIRGSFIDRASFSVECKFLPFISQP 97

Query: 64  QERTY---------AVGKIPGGYLRRESRP--TENEILISRMIDRSIRP--LFSKCYKNE 110
            E  Y         A        +    R   T  E  IS  I+ S+ P  +  K  K+ 
Sbjct: 98  NEHLYNNTSISASSAANTTNQTNVNVNGRTGLTSIEHKISSYIETSLLPSIVLEKYPKST 157

Query: 111 TQVIINVMQHDLE-----SSPHVVS-----MVAASAALMLSGLPFEGPVVGAQVDYINGQ 160
             V + ++  D       S   ++S     + A+S AL+ SG+  +  V        N  
Sbjct: 158 IDVFVTIISTDSSLGGSYSDTKMLSLVNWVLNASSVALVDSGIEVKDVVTSGVAHLQNDV 217

Query: 161 YVLNPRLDEDQGS 173
            VL+P   +++  
Sbjct: 218 LVLDPTEIQEKDE 230


>gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
           thaliana]
          Length = 1111

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 625 GQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++ +V  FG F+        GL HISQLS +R+       K G++V  K+L  D ++ +
Sbjct: 655 GRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKR 714

Query: 683 IKLSMK 688
           I L MK
Sbjct: 715 ISLGMK 720



 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 621 KIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            I  G++ K++    G  V       G VH ++++   V    D  +EG  V  K+L+  
Sbjct: 452 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS 511

Query: 679 DRGK----IKLSMKV 689
              K    I+LS++ 
Sbjct: 512 SSSKGTWQIELSLRT 526



 Score = 40.7 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G V   M  G F+      +  V +S L    V +       G  V  ++L+ +    
Sbjct: 563 VQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSK 622

Query: 682 KIKLSMKVVDQNTGKP 697
           +I++++K V+   G+P
Sbjct: 623 RIEVTLKTVN-AGGRP 637


>gi|308473330|ref|XP_003098890.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
 gi|308268029|gb|EFP11982.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
          Length = 214

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 33/228 (14%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR--------EDEQYVDSLSGTQRND 373
           +R++  ++  L+   GS+ F +G T      + G          E+   +D         
Sbjct: 5   LREMRCELSFLKNADGSACFSQGSTCIWASCS-GPGDGHASKANEEAMTLDI-------S 56

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           +  +      +                   + +  I   +        T+ +     + D
Sbjct: 57  YRANCGDNKFSV---------------LNNIIQSTISKAINLELFPHTTIAVTIHGIQDD 101

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           GS     + G+  AL+D G+P      G+ +  +K  D+ II      +    G + F V
Sbjct: 102 GSIGAVAINGACFALLDNGMPFEAVFCGVLVVRLK--DELIIDPTTKQEASSTGRVLFAV 159

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                G   +     IG    N +  A   A+     I      V+  
Sbjct: 160 CNGADGHPEVCSMDAIGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQR 207



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 27/156 (17%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRS---LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + +DG+   + G T + A+          K  ++   L ++Y+                 
Sbjct: 16  KNADGSACFSQGSTCIWASCSGPGDGHASKANEEAMTLDISYR------ANCGDNKF--- 66

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE----TQVIINVMQHDLESSPHVVSMVAASAA 137
                       +++  I+   SK    E    T + + +     + S   V++  A  A
Sbjct: 67  -----------SVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACFA 115

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS 173
           L+ +G+PFE    G  V  +  + +++P   ++  S
Sbjct: 116 LLDNGMPFEAVFCGVLVVRLKDELIIDPTTKQEASS 151


>gi|302787028|ref|XP_002975284.1| hypothetical protein SELMODRAFT_415445 [Selaginella moellendorffii]
 gi|300156858|gb|EFJ23485.1| hypothetical protein SELMODRAFT_415445 [Selaginella moellendorffii]
          Length = 180

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDG-----LVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           +I  G +  +  FG F+    +        L H+S++S + +   S + K G  V VK+L
Sbjct: 21  EIVSGCIHNIEAFGIFISLAKSNVSVLQGCLCHVSEVSYDFIQDLSTLCKVGQWVQVKIL 80

Query: 676 DFD-DRGKIKLSMKV 689
             D +  +I L MK 
Sbjct: 81  KVDAETKRISLGMKA 95


>gi|195128573|ref|XP_002008737.1| GI13661 [Drosophila mojavensis]
 gi|193920346|gb|EDW19213.1| GI13661 [Drosophila mojavensis]
          Length = 329

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R    + G+L    GS+    G+T+ + +V       E    S           + NF  
Sbjct: 46  RSTFIRAGVLTTVRGSAYMEYGNTKLMAIV---APPRELVRSSAHRVSMGVINCYVNFAA 102

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            ATG++  +     RE   G +  +A+ P++ +     + L I   I + DG      + 
Sbjct: 103 FATGDLESVPE---REKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAIN 159

Query: 443 GSSLALMDAGVPISKPVAGIAMGL 466
              +AL++ G+     +      +
Sbjct: 160 CCGVALIECGISTYDLITASTACI 183



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 29  GAVLATYGETVVLATVVYDRSLK----DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T ++A V   R L            +        +A G +       ES P
Sbjct: 60  GSAYMEYGNTKLMAIVAPPRELVRSSAHRVSMGVINCYVNFAAFATGDL-------ESVP 112

Query: 85  TENEILISRMIDRSIRPLFSKCYKNE---TQVIINVMQHDLESSPHVVSMVAASAALMLS 141
            E E  +  M+ +++ PL     +NE    Q+ I V+  D +      ++     AL+  
Sbjct: 113 -EREKHLGSMLTKALEPLV---CRNEFLNFQLDIRVLILDDDGCLLSTAINCCGVALIEC 168

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQ 171
           G+     +  +      G   +NP    ++
Sbjct: 169 GISTYDLITASTACIYRGYVFINPTAKVEE 198


>gi|119485419|ref|ZP_01619747.1| RNA binding S1 [Lyngbya sp. PCC 8106]
 gi|119457175|gb|EAW38301.1| RNA binding S1 [Lyngbya sp. PCC 8106]
          Length = 295

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++ +G+V  V  FG FV       GL+HI ++S + +     +   G  V   ++D 
Sbjct: 191 EVGQLIEGKVSSVKPFGVFVDL-DGVTGLIHIKEVSQKYIESLPTLFPVGQAVKALVIDL 249

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           ++ R ++ LS ++++   G+
Sbjct: 250 EEGRRRVSLSTRLLENYPGE 269


>gi|326693162|ref|ZP_08230167.1| RNA-binding protein [Leuconostoc argentinum KCTC 3773]
          Length = 125

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
               + +  KG++  +  +GAFV       GL+HIS+  +  V   +  ++ G+ V V +
Sbjct: 1   MTYHIGQKLKGRITGIQPYGAFVMLDDHTQGLIHISECRSGVVHDLNHELQIGEEVVVTV 60

Query: 675 LDFDD-RGKIKLSMKVVD 691
           LD +    KI LS++  +
Sbjct: 61  LDIEQYTNKISLSLRQDN 78


>gi|161524649|ref|YP_001579661.1| RNA-binding S1 domain-containing protein [Burkholderia multivorans
           ATCC 17616]
 gi|160342078|gb|ABX15164.1| RNA binding S1 domain protein [Burkholderia multivorans ATCC 17616]
          Length = 812

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
              +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G  V VK+LD D  
Sbjct: 695 MTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 754

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 755 RQRISLTMRLDDE 767


>gi|222632365|gb|EEE64497.1| hypothetical protein OsJ_19347 [Oryza sativa Japonica Group]
          Length = 581

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 546 LGEFTPRVEIMAIPPD--QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L  F P+ E+M  P +   ++N +G    V    +++   ++ I +              
Sbjct: 258 LRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEK------------- 304

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD 662
                   ++T + E   + +G V K+  +GA +      R GL+H+S ++  ++    D
Sbjct: 305 -----EAWAMTYLREG-TLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGD 358

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V+K G+ V   ++     G+I LS K ++   G
Sbjct: 359 VLKVGEEVKAIVIKSTAPGRIALSTKDLESEPG 391


>gi|311257022|ref|XP_003126922.1| PREDICTED: exosome complex exonuclease MTR3-like [Sus scrofa]
          Length = 254

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           +      RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E         
Sbjct: 24  EDEEPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGGGPA 82

Query: 370 Q---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFP 420
                     R   +  +   P + G   R       E       + A+ P +       
Sbjct: 83  GTGGEAPAALRGRLLCDFRRAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPR 141

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
             L + + + E  GS+  A +  ++LAL DAG+ +   V G 
Sbjct: 142 AQLEVSALLLEDGGSALAAALTAAALALADAGIEMYDLVVGC 183


>gi|167562568|ref|ZP_02355484.1| putative tex protein [Burkholderia oklahomensis EO147]
          Length = 774

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIG-----MGGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKIQKRIDDVLGSRDALAGLSPT 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ V    +VVK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFVKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|148258685|ref|YP_001243270.1| transcriptional accessory protein [Bradyrhizobium sp. BTAi1]
 gi|146410858|gb|ABQ39364.1| Putative transcriptional accessory protein containing S1
           RNA-binding domain [Bradyrhizobium sp. BTAi1]
          Length = 771

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   I +  V  V  FGAF      +DG
Sbjct: 618 DIIKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           L+HIS +S +R+    +VVK G  V VK+LD D  R +I L++++ D    K
Sbjct: 678 LIHISAMSEKRINDPREVVKPGQVVKVKVLDVDVPRNRISLTLRLSDPLPPK 729


>gi|221198064|ref|ZP_03571110.1| putative tex protein [Burkholderia multivorans CGD2M]
 gi|221204378|ref|ZP_03577395.1| putative tex protein [Burkholderia multivorans CGD2]
 gi|221175235|gb|EEE07665.1| putative tex protein [Burkholderia multivorans CGD2]
 gi|221181996|gb|EEE14397.1| putative tex protein [Burkholderia multivorans CGD2M]
          Length = 812

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
              +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G  V VK+LD D  
Sbjct: 695 MTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 754

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 755 RQRISLTMRLDDE 767


>gi|302524821|ref|ZP_07277163.1| transcriptional accessory protein [Streptomyces sp. AA4]
 gi|302433716|gb|EFL05532.1| transcriptional accessory protein [Streptomyces sp. AA4]
          Length = 824

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +     +G V  V  FGAF+     +DGL H+S LS   V    DVVK GD V VK+LD 
Sbjct: 691 KPGMRLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPRDVVKPGDIVKVKVLDV 750

Query: 678 D-DRGKIKLSMKVVDQN 693
           D  R +I L++++ D+ 
Sbjct: 751 DVPRKRISLTLRLDDEP 767


>gi|258576013|ref|XP_002542188.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902454|gb|EEP76855.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 270

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 86/276 (31%), Gaps = 48/276 (17%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR    +R I AQ+     + GSS    G+T  +  V  G  E  +  ++  G+   
Sbjct: 15  RLDGRRWNELRLIDAQISTNPASSGSSYLATGNTVVVCNVH-GPAEG-KRSETTGGSGGA 72

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              +  N    A  +  +                     +         T+ I   +  S
Sbjct: 73  VVSVVVNIAGFAGIDRRKK------------------SMMASGGGGSDSTISIHVSVLSS 114

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD------------------GDDFI 474
           DGS   A V   +LAL+DAG+P+   +    +G+                      +   
Sbjct: 115 DGSIFAACVNACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSSSRVGGINESLD 174

Query: 475 ILSDISGDEDHLG-HMDFKVAGTDSGITAMQMDM--------KIGGISENIMVMALQQAK 525
            L D+S  E+    HM         G +    +            G+  + +        
Sbjct: 175 PLLDMSHPEEMELPHMTVANTNPVGGGSEADAEEAQMLSIVRMESGVHISYLETMFAVGI 234

Query: 526 RGRLHILNEMSKVLSES-RLQLGEFTPRVEIMAIPP 560
            G   +   ++ VL  + +  L         M I P
Sbjct: 235 DGCKQMRQILNGVLKRAGKKVLEVEAGHSAGMDIEP 270


>gi|189350594|ref|YP_001946222.1| transcription accessory protein [Burkholderia multivorans ATCC
           17616]
 gi|189334616|dbj|BAG43686.1| transcription accessory protein [Burkholderia multivorans ATCC
           17616]
          Length = 774

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
              +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G  V VK+LD D  
Sbjct: 657 MTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRISLTMRLDDE 729


>gi|116618799|ref|YP_819170.1| RNA-binding protein [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097646|gb|ABJ62797.1| RNA binding protein (S1 domain) [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 127

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  KG++  +  +GAFV       GL+HIS+  +  V   +  +K G  V + ++D +
Sbjct: 5   VGQKLKGRITGIQPYGAFVSLDDHTQGLIHISECKSGIVRDLNGELKVGKEVNIVIMDIE 64

Query: 679 D-RGKIKLSMKVVD 691
              GKI LS++  +
Sbjct: 65  QYNGKISLSLRQDE 78


>gi|297742560|emb|CBI34709.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 572 KVIRGIVEQTGAKVNI-----DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           + I+ +    G K+N+     D      I S    E E   E  RS+     +  I K +
Sbjct: 472 EKIKFLSSFVGQKINVNVVMADRKTRRLIFSGRPKEKEEMVEKKRSLMAKLSIGDIVKCR 531

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           + K+  FG FV   G    LVH +++S +     +   K G  V  K+   D    +I L
Sbjct: 532 IKKITYFGIFVEVEG-VPALVHQTEVSWDATLDPASYFKIGQIVEAKVHQLDFSLERIFL 590

Query: 686 SMKVVDQNT 694
           S+K +  + 
Sbjct: 591 SLKEITPDP 599


>gi|221212785|ref|ZP_03585761.1| putative tex protein [Burkholderia multivorans CGD1]
 gi|221166998|gb|EED99468.1| putative tex protein [Burkholderia multivorans CGD1]
          Length = 774

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
              +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G  V VK+LD D  
Sbjct: 657 MTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRISLTMRLDDE 729


>gi|50294291|ref|XP_449557.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528871|emb|CAG62533.1| unnamed protein product [Candida glabrata]
          Length = 1706

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKV-NIDDDG----TVKIASSSLAEIEAA-REMIR 611
           +PP  I ++  +  +    I  +T  ++ N+D+ G    T+K +  +  E+E    E   
Sbjct: 518 VPPLHISDIRLIYPERKFKIASKTKCRILNVDNHGHIIATMKKSLVNDEELEKPVIESFE 577

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +   +   N+   G V      G  + F G   G +  S++S   V +  D ++ G TV 
Sbjct: 578 TAKSIKNKNEKTVGTVQSFNGHGCVIMFFGGVTGFLPKSEVSEVFVKRAEDHLRLGQTVQ 637

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNT 694
           VK+L+ D +R +I ++ KV ++  
Sbjct: 638 VKVLEVDEERRRIIVTCKVSNEEA 661



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 6/157 (3%)

Query: 546  LGEFTPRVEIMAIPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604
            L  F  +     +P  ++ +  +    K  + +    G  V+ ++D  + +         
Sbjct: 1169 LFVFLGKSVEAFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTLRETEVNG 1228

Query: 605  AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSD 662
              + +       P    I+ G V  V DFG FV         GL HI++++ E       
Sbjct: 1229 DLKVLKNYSDIKP--GDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQS 1286

Query: 663  VVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPI 698
            +   GD V   +L  +   K + LS+K    NT + I
Sbjct: 1287 IFGVGDRVKAYVLKSNPEKKQLSLSLKASHFNTNETI 1323



 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 579  EQTGAKVN--IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
            E   AK+   I D+  V++  +             +     +V ++  G V  V D G F
Sbjct: 1115 EFVKAKITSVIADEKKVQLQLAEDESTVQKI----TSHSDLKVGEVVNGLVKTVTDKGLF 1170

Query: 637  VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            V    + +  V +S+LS   + +     K    V  K++  ++  +I L+++  +
Sbjct: 1171 VFLGKSVEAFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTLRETE 1225



 Score = 39.1 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 619 VNKIYKGQVV-KVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           V +++    + K    G  +   G +    V    +S  R+       K       ++L+
Sbjct: 488 VGEVFNNCEILKASSSGVELKLLGGQFTAFVPPLHISDIRLIYPERKFKIASKTKCRILN 547

Query: 677 FDDRGKIKLSMK---VVDQNTGKPIV 699
            D+ G I  +MK   V D+   KP++
Sbjct: 548 VDNHGHIIATMKKSLVNDEELEKPVI 573


>gi|24645688|ref|NP_650001.2| Rrp46 [Drosophila melanogaster]
 gi|23170911|gb|AAF54530.3| Rrp46 [Drosophila melanogaster]
 gi|212287964|gb|ACJ23457.1| FI06805p [Drosophila melanogaster]
          Length = 233

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 16/176 (9%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R +  +   L R  GS ++ +G T  I  V LG  E +    S+ G+      +  N
Sbjct: 12  DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAV-LGPIEVKTQNLSIDGSY-----LECN 65

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A       G P   +       R  +   L   A     + +  +  E  GS    
Sbjct: 66  YRPKA-------GLPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 118

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
            V  + LA++  G+P+    A +   ++ +  +++   D    E       F  A 
Sbjct: 119 AVNCACLAMLIGGLPLKYSFAAVH-AIINEQGEYV--LDPDQSETLHQRASFTFAF 171



 Score = 44.5 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E   ++R  DG+V+ + G T ++  V+    +K      D   L  NY+ +    
Sbjct: 15  RQMHCEFNPLSR-CDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPK---A 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G        RE+   +  + ++ + +   R   S       Q+     + +   S    +
Sbjct: 71  GLPQVTDRIREAAIRD-VLELALLSEAHPRSKMS------VQI----QELEDRGSIDACA 119

Query: 131 MVAASAALMLSGLPFEGPVVGA-QVDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVL 186
           +  A  A+++ GLP +        +    G+YVL+P   E    + S        +  +L
Sbjct: 120 VNCACLAMLIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLL 179

Query: 187 MVELEANQ-LSEDVVLDAIIFGHNECKPVIEAI-SKLAKMCAKEPIVIDSKDFSK 239
           +++ + +  +++   ++ +    +    + +   +++AK   +       +D ++
Sbjct: 180 LIQTKGSFKIAQFNDIECLCLAASA--EIFQFYRNQVAKYHGRSEATAKKEDVNE 232


>gi|167836414|ref|ZP_02463297.1| transcription accessory protein, TEX [Burkholderia thailandensis
           MSMB43]
          Length = 740

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    +VVK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|162447732|ref|YP_001620864.1| 30S ribosomal protein S1 [Acholeplasma laidlawii PG-8A]
 gi|161985839|gb|ABX81488.1| small subunit ribosomal protein S1 [Acholeplasma laidlawii PG-8A]
          Length = 470

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + +G V       AFV F     G++ ISQ+S  R+ K  DV++ G  V VK++   +  
Sbjct: 197 VLEGVVESFETHAAFVRF-EHVSGMLRISQVSHHRIDKIEDVLEIGQKVQVKVIK-KEGN 254

Query: 682 KIKLSMKVVDQNT 694
           ++ LSMK +    
Sbjct: 255 RLDLSMKALQPTP 267



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVN 620
           D+I +V+ +G KV   ++++ G ++++       +  +       A           +V 
Sbjct: 232 DKIEDVLEIGQKVQVKVIKKEGNRLDLS---MKALQPTPYEAYLKA----------HKVG 278

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +  KG+VV  + FG  V       GL+H S+ S    +     +K  D +   +L  D  
Sbjct: 279 ETVKGKVVSKLPFGILVELDRDVKGLLHKSEYSWNPQSNFDAYIKIDDEIEAVILSKDAK 338

Query: 680 RGKIKLSMKVVDQNTG 695
           + +I LS KV++ N  
Sbjct: 339 KERISLSKKVLEDNPW 354


>gi|227538263|ref|ZP_03968312.1| transcription accessory protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241778|gb|EEI91793.1| transcription accessory protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 741

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV     +DGLVH+SQL+   V+   +VVK    V V + + D+ R +I
Sbjct: 637 GIVTNITNFGAFVDIGVHQDGLVHLSQLANRFVSDPHEVVKVQQQVMVTVTEVDEKRNRI 696

Query: 684 KLSMKVVDQNTGKP 697
            LSMK  +++  +P
Sbjct: 697 GLSMKTEEKSAPRP 710


>gi|269214553|ref|ZP_06158647.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
 gi|269209602|gb|EEZ76057.1| ribosomal protein S1 [Neisseria lactamica ATCC 23970]
          Length = 252

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID++               A        +  
Sbjct: 8   VHPSK---VVQLGDEVEVMILE-------IDENRRRISLGMKQC---QANPWEEFAANHN 54

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 55  KGDKI-SGAVKSITDFGIFVGLPGGIDGLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVV 111

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 112 LAIDVEKERISLGIKQLEGDP 132



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   S  +KEGD V   +L  D + 
Sbjct: 145 LVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLSTKLKEGDEVEAVVLTVDRKN 204

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 205 RSIKLSVKAKDAKESRE 221



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            +    S VV+ GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 5   NKNVHPSKVVQLGDEVEVMILEIDENRRRISLGMKQCQANPWEE 48


>gi|141795595|gb|AAI39595.1| Pdcd11 protein [Danio rerio]
          Length = 932

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I  G VV + +FG  V F     GLV + +L+TE V    ++   G  V VK+L  D+ 
Sbjct: 532 RISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEE 591

Query: 681 GKI-KLSMKVVDQN 693
            K+ +LS K V + 
Sbjct: 592 KKMLRLSFKSVTEE 605



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           N    G V      L        + ++ +++    ++  G V  +M +G F+ F     G
Sbjct: 681 NYKKKGIVLTKKPHLKAYIEDGAIPKNFSELQVGMQMV-GWVKNIMPYGVFISFPYGVFG 739

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           L  I+ +  + + +TS +     TV  K+ + D+  
Sbjct: 740 LAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEK 775



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +V +I +G V+ +   G +V       G++    L+   +         
Sbjct: 429 IETPFFSCQDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYP 488

Query: 667 GDTVWVKLLDFDDRGKIK-LSMKVVDQNTGKPI 698
           G  V  ++L  + + K+  L+ K     +  PI
Sbjct: 489 GLKVKCRVLSVEAQKKLLILTRKKALVESTLPI 521


>gi|195591661|ref|XP_002085557.1| GD12240 [Drosophila simulans]
 gi|194197566|gb|EDX11142.1| GD12240 [Drosophila simulans]
          Length = 327

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R+   + G+L    GS+    G+T+ + +V       E    S           + NF  
Sbjct: 48  RNTFIRAGVLTTVRGSAYMEYGNTKVLAIV---APPKELIRASARRMNMGVLNCYVNFAA 104

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
             TG++  +     RE     +  +A+ PV+ +T    + L I   I + DG      + 
Sbjct: 105 FGTGDLESVPE---RERHLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAIN 161

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKD 469
              +AL++ G+     +      + +D
Sbjct: 162 CCGVALVECGISTYDLITASTACIYRD 188



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VLA V   + L            L        +  G +       ES P
Sbjct: 62  GSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFGTGDL-------ESVP 114

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +S M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 115 -ERERHLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 173

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               +  +          LNP    ++
Sbjct: 174 TYDLITASTACIYRDHVFLNPSAKIEE 200


>gi|16183595|gb|AAL13710.1| GM01970p [Drosophila melanogaster]
          Length = 233

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 16/176 (9%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           + +R +  +   L R  GS ++ +G T  I  V LG  E +    S+ G+      +  N
Sbjct: 12  DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAV-LGPIEVKTQNLSIDGSY-----LECN 65

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           + P A       G P   +       R  +   L   A     + +  +  E  GS    
Sbjct: 66  YRPKA-------GLPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 118

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
            V  + LA++  G+P+    A +   ++ +  +++   D    E       F  A 
Sbjct: 119 AVNCACLAMLIGGLPLKYSFAAVH-AIINEQGEYV--LDPDQSETLHQRASFTFAF 171



 Score = 43.7 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 73/188 (38%), Gaps = 22/188 (11%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD---GQDFFPLTVNYQERTYAV 70
           R +  E   ++R  DG+V+ + G T ++  V+    +K      D   L  NY+ +    
Sbjct: 15  RQMHCEFNPLSR-CDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPK---A 70

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
           G        RE+   +  + ++ + +   R   S       Q+     + +   S    +
Sbjct: 71  GLPQVTDRIREAAIRD-VLELALLSEAHPRSKMS------VQI----QELEDRGSIDACA 119

Query: 131 MVAASAALMLSGLPFEGPVVGA-QVDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVL 186
           +  A  A+++ GLP +        +    G+YVL+P   E    + S        +  +L
Sbjct: 120 VNCACLAMLIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLL 179

Query: 187 MVELEANQ 194
           +++ + + 
Sbjct: 180 LIQTKGSF 187


>gi|126656406|ref|ZP_01727667.1| RNA binding S1 [Cyanothece sp. CCY0110]
 gi|126622092|gb|EAZ92799.1| RNA binding S1 [Cyanothece sp. CCY0110]
          Length = 717

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I +G +  V++FGAFV     +DGL+HISQL+   V+   +VVK G+ V VK+L+ D +
Sbjct: 647 MILEGVITNVVNFGAFVDIGVHQDGLIHISQLANYFVSDPKEVVKVGEVVKVKVLEIDQK 706

Query: 681 -GKIKLSMKVV 690
             +I LSMK V
Sbjct: 707 LKRISLSMKEV 717


>gi|164425200|ref|XP_962876.2| hypothetical protein NCU06272 [Neurospora crassa OR74A]
 gi|157070830|gb|EAA33640.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1774

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 616  VPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            + E   I  G+V KV +FGAF+   G     GL H S++S + V     + +EGD V  K
Sbjct: 1285 LKEGQTI-TGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAK 1343

Query: 674  LLDFD-DRGKIKLSMK 688
            +L  D    +I L +K
Sbjct: 1344 VLKVDITAKRINLGLK 1359



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           G ++ V+  GA V F G   G + +S++S   +    +  + G TV + ++ FD 
Sbjct: 631 GTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDP 685



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     EV +I +G V  V D G FV   G     V I  LS   +    +  + 
Sbjct: 1188 KDKEITQNTKLEVGEIVRGFVKNVSDKGLFVTLGGTVTAFVQIKNLSDAYLKYWKEQFQV 1247

Query: 667  GDTVWVKLLDFDDRGKIKLSMK--VVDQN 693
               V  +++   + G+I++S+K  VVD++
Sbjct: 1248 DQLVKGRIISVAN-GRIEMSLKPSVVDKD 1275



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  V       GLV     +   +       +EG  V  ++L  D   + I+L++K    
Sbjct: 551 GLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLV 610

Query: 693 NTGKPIV 699
           N+  P +
Sbjct: 611 NSDLPAI 617


>gi|147798860|emb|CAN68047.1| hypothetical protein VITISV_017724 [Vitis vinifera]
          Length = 768

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 572 KVIRGIVEQTGAKVNI-----DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           + I+ +    G K+N+     D      I S    E E   E  RS+     +  I K +
Sbjct: 538 EKIKFLSSFVGQKINVNVVMADRKTRRLIFSGRPKEKEEMVEKKRSLMAKLSIGDIVKCR 597

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           + K+  FG FV   G    LVH +++S +     +   K G  V  K+   D    +I L
Sbjct: 598 IKKITYFGIFVEVEG-VPALVHQTEVSWDATLDPASYFKIGQIVEAKVHQLDFSLERIFL 656

Query: 686 SMKVVDQNT 694
           S+K +  + 
Sbjct: 657 SLKEITPDP 665


>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722 [Chlorella variabilis]
          Length = 223

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 17/216 (7%)

Query: 17  KLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI-PG 75
            L+TG I+ Q+ G+  A +G T V+  V   R  +         V Y E+      +   
Sbjct: 4   VLKTGVIS-QASGSAYAEFGHTKVMVGVYGPRQSER-------RVGYSEQGRVNCDVKLA 55

Query: 76  GYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHVVSMVA 133
            +  R+   +  E  +S  +  ++      +   K    V + V++         V+  A
Sbjct: 56  SFASRQRGQSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGGGELG--VAATA 113

Query: 134 ASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVLMVEL 190
           A+ AL  +G+     V    V  + G  VL+P  DE   ++G L L +  T   V  +  
Sbjct: 114 AALALADAGVEMFDLVAACSVSRVQGSLVLDPTADEVFREEGGLVLALMPTSSEVTQMVS 173

Query: 191 EANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
                S   + + +      C  +  A  +  K  A
Sbjct: 174 RGRWSS-SQLREGMELAMGGCAQLDAAARQCLKEAA 208



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 30/222 (13%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
            R +  + G++ +  GS+    G T+ +V V  G R+ E+ V     +++          
Sbjct: 1   CRAV-LKTGVISQASGSAYAEFGHTKVMVGV-YGPRQSERRV---GYSEQGRVNCDVKLA 55

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
             A    SR    S  E       + A+       +    ++ +   + E+ G       
Sbjct: 56  SFA----SRQRGQSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGGGELGVAA 111

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE--DHLGHMDFKVAGTDSG 499
             ++LAL DAGV +   VA  ++  V+      ++ D + DE     G +   +  T S 
Sbjct: 112 TAAALALADAGVEMFDLVAACSVSRVQ----GSLVLDPTADEVFREEGGLVLALMPTSSE 167

Query: 500 ITAM-------------QMDMKIGGISENIMVMALQQAKRGR 528
           +T M              M++ +GG     +  A +Q  +  
Sbjct: 168 VTQMVSRGRWSSSQLREGMELAMGG--CAQLDAAARQCLKEA 207


>gi|301614745|ref|XP_002936843.1| PREDICTED: protein RRP5 homolog [Xenopus (Silurana) tropicalis]
          Length = 1818

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +      G V  +M +GAFV F     GLV  S++S + V   SD + EG TV  K++
Sbjct: 723 EVQTGMHLTGFVKSIMPYGAFVEFPYGLFGLVPKSEISDKFVTNISDHLFEGQTVLAKVI 782

Query: 676 DFD-DRGKIKLSMKV 689
             D ++ +  L++K+
Sbjct: 783 KTDEEKQRFLLTLKM 797



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +P     +V+    +    I  +   KV        K+  +    +  ++  I +  D  
Sbjct: 477 VPKLHFADVLLKHPEKKYIIGNKIKCKVLTVITSERKLILTRKKTLMKSKLPIIASFDDA 536

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLD 676
           +   I  G +V + D+G  V F     GL    +L S + ++   D    G  + V++LD
Sbjct: 537 QPGLITHGFIVAIKDYGCIVKFFNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVRVLD 596

Query: 677 FDDRG-KIKLSMK 688
            + +  K+ LS +
Sbjct: 597 CNPQTQKLLLSFR 609



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 6/116 (5%)

Query: 590 DGTVKIASSSLAEI-----EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
            G +K  S           E     +    +  +  ++ +G +  +   G  V       
Sbjct: 415 KGRIKEFSPMEEMHFLSLREKMITDLFLRHEDIQAGQVLEGTIQSLEAVGLVVKITDHLT 474

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDRGKIKLSMKVVDQNTGKPIV 699
           GLV     +   +         G+ +  K+L       K+ L+ K     +  PI+
Sbjct: 475 GLVPKLHFADVLLKHPEKKYIIGNKIKCKVLTVITSERKLILTRKKTLMKSKLPII 530



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQV 627
            G ++R           + ++G +   S +  ++  A   +     +  +    + K Q+
Sbjct: 227 KGPLLRIGQYLNCVIQEVKNEGRIVRLSITQNDVTGALATMEQNWTLNNLLPGLVLKAQI 286

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686
            KV      + F  +  G V       +++       KEG  V   +L  D   K I+L+
Sbjct: 287 EKVTQSSITLSFLSSYTGFVDFLHFEPKKIGS----YKEGQEVKACILWLDPSTKSIRLT 342

Query: 687 MKVVDQNTGKPI 698
           ++   Q  G P+
Sbjct: 343 LRQCFQQPGNPL 354


>gi|312377314|gb|EFR24174.1| hypothetical protein AND_11431 [Anopheles darlingi]
          Length = 269

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R +  +  +L R+  S+   +G TQ +V    G  E +     L   +  +  +   + 
Sbjct: 7   LRRMICETNILSRSDCSAALSQGATQVMVSAN-GPAEVK-----LRNAESENAHLEVQYR 60

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
             A  E         R +    L +R+   V+  TA     + +  +     G      +
Sbjct: 61  SNAGLE-----DIQNRLVES--LIKRSFVRVVASTAFPRSAVYVFVQEMTDKGGLLACCI 113

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
             + LAL+  G+ ++  VA +   + +DG+   ++ D    +  L    F     DS   
Sbjct: 114 NATCLALITGGIELNFTVAAVHCIIDEDGN---MILDPDSKQMKLARSSFTFVY-DSIAK 169

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
                   G  + +         K     I N   KV  
Sbjct: 170 NTVTSYVYGSFTFDEYERVASVCKEAVDKIFNFYRKVSE 208



 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 78/262 (29%), Gaps = 27/262 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAV 70
           R +  ET  ++R SD +   + G T V+ +      +K      +   L V Y+      
Sbjct: 8   RRMICETNILSR-SDCSAALSQGATQVMVSANGPAEVKLRNAESENAHLEVQYR------ 60

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
                     + +    E LI R   R +        ++   V +  M  D         
Sbjct: 61  ----SNAGLEDIQNRLVESLIKRSFVRVVASTA--FPRSAVYVFVQEM-TDKGGLL-ACC 112

Query: 131 MVAASAALMLSGLPFEGPVVGAQ-VDYINGQYVLNPRLDEDQ---GSLDLFVSGTQDAVL 186
           + A   AL+  G+     V     +   +G  +L+P   + +    S            +
Sbjct: 113 INATCLALITGGIELNFTVAAVHCIIDEDGNMILDPDSKQMKLARSSFTFVYDSIAKNTV 172

Query: 187 MVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC----AKEPIVIDSKDFSKLEE 242
              +  +  + D               +     K+++             +    S +  
Sbjct: 173 TSYVYGSF-TFDEYERVASVCKEAVDKIFNFYRKVSENITQCFGSASEPPNHPFPSGIPV 231

Query: 243 EMSQMIKEDLRVSCFIPEKYVR 264
            + ++  E +R  C I    +R
Sbjct: 232 RIFELFLETMRSQCDISTAMLR 253


>gi|323435993|ref|ZP_01049562.2| Transcriptional accessory protein [Dokdonia donghaensis MED134]
 gi|321496308|gb|EAQ39534.2| Transcriptional accessory protein [Dokdonia donghaensis MED134]
          Length = 707

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  ++  G V  V  FGAFV       GL+HIS L+   V+  S  V     V VK+L+
Sbjct: 634 VQSGQLLPGIVNNVTAFGAFVDIGIKESGLIHISNLADGFVSDVSAHVSLQQQVIVKVLE 693

Query: 677 FD-DRGKIKL 685
            D  R +I+L
Sbjct: 694 VDIARKRIQL 703


>gi|242057851|ref|XP_002458071.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
 gi|241930046|gb|EES03191.1| hypothetical protein SORBIDRAFT_03g026440 [Sorghum bicolor]
          Length = 426

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           +    +T + E   + +G V K+  +GA V   G  R GL+HIS ++   V   SD++K 
Sbjct: 276 KKAWEMTYLKEG-TLLQGTVRKIFPYGAQVRIAGTNRSGLLHISNITRGNVLSVSDILKI 334

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            D V V ++  +   KI LS   ++   G
Sbjct: 335 DDEVKVIVIKSNVPDKIALSTADLESAPG 363


>gi|108742058|gb|AAI17595.1| Pdcd11 protein [Danio rerio]
          Length = 1431

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I  G VV + +FG  V F     GLV + +L+TE V    ++   G  V VK+L  D+ 
Sbjct: 532 RISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEE 591

Query: 681 GKI-KLSMKVVDQN 693
            K+ +LS K V + 
Sbjct: 592 KKMLRLSFKSVTEE 605



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +V +I +G V  +   G +V       G++    L+   +         
Sbjct: 429 IETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYP 488

Query: 667 GDTVWVKLLDFDDRGKIK-LSMKVVDQNTGKPI 698
           G  V  ++L  + + K+  L+ K     +  PI
Sbjct: 489 GLKVKCRVLSVEAQKKLLILTRKKALVESTLPI 521



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           N    G V      L        + ++ +++    ++  G V  +M +G F+ F     G
Sbjct: 681 NYKKKGIVLTKKPHLKAYIEDGAVPKNFSELQVGMQMV-GWVKNIMPYGVFISFPYGVFG 739

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           L  I+ +  + + +TS +     TV  K+ + D+  
Sbjct: 740 LAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEK 775



 Score = 40.7 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 614  TDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            T   E        V K+    G  +       GL H++ LS     K  +  KEG  +  
Sbjct: 1175 THKLEPGMNTLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRC 1234

Query: 673  KLLD 676
             +++
Sbjct: 1235 HVIE 1238


>gi|146276457|ref|YP_001166616.1| RNA-binding S1 domain-containing protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554698|gb|ABP69311.1| RNA binding S1 domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 772

 Score = 62.6 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 19/147 (12%)

Query: 561 DQIRNVIGMGGKVIRGIVEQT------GAKVNIDDDGTVKIASSSLAEIEAA----REMI 610
           D  R ++   G+ +R ++ +         +   DD   +      LAE+E      R   
Sbjct: 576 DVARKIVAACGRDLRSLMAEPQRLRALDPQDFTDDRFGLPTVRDILAELEKPGRDPRPTF 635

Query: 611 RSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++ T    V +I         +G V  V  FGAFV     +DGLVH+SQL+   V    +
Sbjct: 636 KTATFTEGVEEISDLKVGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHE 695

Query: 663 VVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           VVK GD V V++++ D  R +I L+M+
Sbjct: 696 VVKAGDVVKVRVVEVDVARKRIGLTMR 722


>gi|328886475|emb|CCA59714.1| Transcription accessory protein [Streptomyces venezuelae ATCC
           10712]
          Length = 807

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  
Sbjct: 652 MVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVKDPRDVVKPGDVVKVKVLDVDIP 711

Query: 680 RGKIKLSMKVVDQNTGK 696
           R +I L++++ D++  +
Sbjct: 712 RKRISLTLRLDDESGTE 728


>gi|167569750|ref|ZP_02362624.1| transcription accessory protein, TEX [Burkholderia oklahomensis
           C6786]
          Length = 324

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIG-----MGGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 99  DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKIQKRIDDVLGSRDALAGLSPT 158

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 159 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAA 218

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ V    +VVK G       L     R +I L+M++ D
Sbjct: 219 FGAFVDIGVHQDGLVHVSAMSTKFVKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDD 278


>gi|332291651|ref|YP_004430260.1| Tex-like protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169737|gb|AEE18992.1| Tex-like protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 707

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  ++  G V  V  FGAFV       GL+HIS L+   V+  S  V     V VK+L+
Sbjct: 634 VQPGQLLPGIVNNVTAFGAFVDIGIKESGLIHISNLADGFVSDVSAHVSLQQQVIVKVLE 693

Query: 677 FD-DRGKIKL 685
            D  R +I+L
Sbjct: 694 VDIARKRIQL 703


>gi|146104665|ref|XP_001469886.1| exosome-associated protein 4 [Leishmania infantum]
 gi|134074256|emb|CAM73000.1| putative exosome-associated protein 4 [Leishmania infantum JPCM5]
 gi|322503863|emb|CBZ38949.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 221

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 18/228 (7%)

Query: 312 VRMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            R DGR+    VR I     +L   H S+    G T+ +  V        Q++       
Sbjct: 2   KRADGRESPRAVRAIHVATNVLANCHSSACVEIGKTRVLCGV-----RPPQHLVQEYRGT 56

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR-IVSEI 429
           R       +    +    S +     R++    LA   +        + P  L   + E+
Sbjct: 57  RGRVSCQVH---RSLASSSNLDNSGDRDM---ALALEGVAEQAVVLERIPQLLVGALIEV 110

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
              DG+   A      +AL   GV +    +  +  L +DG    I+ D++ +E      
Sbjct: 111 VHDDGAVWDAATTALCVALTAGGVEVYDTFSACSAALRRDG---AIIVDLTREEAATAMA 167

Query: 490 DFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
              V    +  G+            + + +V A  +  + R   L E 
Sbjct: 168 SVVVCSGLSLGGVYYCCHKGACEATTMSQLVQAATKGLQVRKVPLLEQ 215


>gi|309379232|emb|CBX22189.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 258

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           + P +   V+ +G +V   I+E       ID++               A        +  
Sbjct: 14  VHPSK---VVQLGDEVEVMILE-------IDENRRRISLGMKQC---QANPWEEFAANHN 60

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV---KEGDTVWVKL 674
           + +KI  G V  + DFG FV   G  DGLVH+S LS        + V   K+G+ V   +
Sbjct: 61  KGDKI-SGAVKSITDFGIFVGLPGGIDGLVHLSDLSWT--ESGEEAVRKYKKGEEVEAVV 117

Query: 675 LDFD-DRGKIKLSMKVVDQNT 694
           L  D ++ +I L +K ++ + 
Sbjct: 118 LAIDVEKERISLGIKQLEGDP 138



 Score = 60.3 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           + KG V  V   GA V      +G +  S+ + +RV   S  +KEGD V   +L  D + 
Sbjct: 151 LVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLSTKLKEGDEVEAVVLTVDRKN 210

Query: 682 K-IKLSMKVVDQNTGKP 697
           + IKLS+K  D    + 
Sbjct: 211 RSIKLSVKAKDAKESRE 227



 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 646 LVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           +VH+S++    +    S VV+ GD V V +L+ D+ R +I L MK    N  + 
Sbjct: 1   MVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDENRRRISLGMKQCQANPWEE 54


>gi|297190576|ref|ZP_06907974.1| transcription accessory protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297150541|gb|EDY61798.2| transcription accessory protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 793

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK GD V VK+LD D  
Sbjct: 650 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKSGDVVKVKVLDVDIP 709

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I L++++ D  T +P
Sbjct: 710 RKRISLTLRLDDMATAQP 727


>gi|218778660|ref|YP_002429978.1| RNA binding S1 domain protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760044|gb|ACL02510.1| RNA binding S1 domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 752

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     E      G V  V +FGAFV     +DGLVHISQLS   V   +DVVK    V 
Sbjct: 632 TEMKDLEPGMELPGIVTNVTNFGAFVDVGVHQDGLVHISQLSDGFVKNPADVVKVQQRVK 691

Query: 672 VKLLDFD-DRGKIKLSMK 688
           V++L+ D  R +I LSMK
Sbjct: 692 VRVLEVDLPRKRISLSMK 709


>gi|313903625|ref|ZP_07837015.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466178|gb|EFR61702.1| RNA binding S1 domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 330

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 603 IEAAREMIRSITDVPEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           + AA E +R +  +  +       G +  ++D+GAF+     R GL+HIS++S   V + 
Sbjct: 1   MAAAGEGVRDLAGLVPLAPGTRVHGTITGIVDYGAFLVTDDGRRGLIHISEISDWYVERA 60

Query: 661 SDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
            D   +G+ V V+++ FD   GK   S + +
Sbjct: 61  EDYFYKGERVQVEVVHFDPNSGKYAFSTRRL 91


>gi|302696003|ref|XP_003037680.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
 gi|300111377|gb|EFJ02778.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
          Length = 206

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 19/169 (11%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R+IS     L R  GS+ F  GDT A+  V+ G  E       L+  Q        N  P
Sbjct: 1   REISVSFDGLARVDGSARFSFGDTTALASVS-GPIEVR-----LAAEQPARATFEVNMRP 54

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE-----SDGSSS 437
            +      + A   + I      R A+ P +         ++++ +        SD S  
Sbjct: 55  IS-----NVPATEAKSI--AASVRAALSPSIFLQQYPRTLIQLMLQALSPARAKSDDSLL 107

Query: 438 MATVCGSSLALMDAG-VPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
            A +   SLAL++AG   +   V  + +  +  GD  I++ D   DE  
Sbjct: 108 AAMINAGSLALLNAGSAAMRGVVCAVPVARIPSGDSTILVVDPDTDELS 156



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 29/204 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +    +AR  DG+   ++G+T  LA+V     ++   +  P    ++     +  +
Sbjct: 1   REISVSFDGLAR-VDGSARFSFGDTTALASVSGPIEVRLAAEQ-PARATFEVNMRPISNV 58

Query: 74  PGGYLRRESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQ---HDLESSPHV 128
           P    +           I+  +  ++ P     +  +   Q+++  +       + S   
Sbjct: 59  PATEAKS----------IAASVRAALSPSIFLQQYPRTLIQLMLQALSPARAKSDDSLLA 108

Query: 129 VSMVAASAALMLSG-LPFEGPVVGAQVDYINGQ----YVLNPRLDEDQGS------LDLF 177
             + A S AL+ +G     G V    V  I        V++P  DE   +        LF
Sbjct: 109 AMINAGSLALLNAGSAAMRGVVCAVPVARIPSGDSTILVVDPDTDELSRARGTGCFAFLF 168

Query: 178 VSGTQDAV-LMVELEANQLSEDVV 200
            + T D V +     +    E+ +
Sbjct: 169 SAATTDCVWMHWRNASGASLENDI 192


>gi|183982595|ref|YP_001850886.1| transcriptional accessory protein Tex [Mycobacterium marinum M]
 gi|183175921|gb|ACC41031.1| transcriptional accessory protein Tex [Mycobacterium marinum M]
          Length = 787

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVKVMDF 633
             DD   V   +  LAE+E      R                  +V  + +G V  V  F
Sbjct: 609 FADDRFGVPTVTDILAELEKPGRDPRPAFITATFAAGVEKVADLKVGMVLEGVVTNVAAF 668

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           GAFV     +DGLVH+S ++   V+   +VV+ G       +    +R +I LS+++ D+
Sbjct: 669 GAFVDVGVHQDGLVHVSAMAERFVSDPHEVVRSGQVVRVKVVDVDVERQRIGLSLRLNDE 728

Query: 693 N 693
            
Sbjct: 729 P 729


>gi|149371071|ref|ZP_01890666.1| putative RNA binding protein with S1 RNA-binding domain
           [unidentified eubacterium SCB49]
 gi|149355857|gb|EDM44415.1| putative RNA binding protein with S1 RNA-binding domain
           [unidentified eubacterium SCB49]
          Length = 705

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 1/101 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +               A        D     ++  G V  +  FG FV       G
Sbjct: 601 DIIKELEKPGLDIREKAKAFAFNQNIKTIDDLRSGQLLPGIVNNITAFGCFVDVGIKESG 660

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           L+H+S LS   V   ++ V     V VK+L+ D  R +I+L
Sbjct: 661 LIHVSNLSDSFVKDVNEHVTLQQQVMVKVLEVDVARKRIQL 701


>gi|170733158|ref|YP_001765105.1| RNA-binding S1 domain-containing protein [Burkholderia cenocepacia
           MC0-3]
 gi|169816400|gb|ACA90983.1| RNA binding S1 domain protein [Burkholderia cenocepacia MC0-3]
          Length = 815

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            +        L          R  +     P VE M    ++  + +    + + G+   
Sbjct: 590 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKINKRIDDVLGNREALSGL--- 646

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEA----AREMIRSITDVPEVNKI--------YKGQVV 628
                 +D+   +      LAE+E      R   ++ T    V K+         +G V 
Sbjct: 647 -SPTEFVDERFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLVPGMTLEGVVT 705

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSM 687
            V  FGAFV     +DGLVH+S +ST+ +    +VVK G       +     R +I L+M
Sbjct: 706 NVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVIDVDVKRQRIALTM 765

Query: 688 KVVDQNTGKP 697
           + +D +   P
Sbjct: 766 R-LDDDAAAP 774


>gi|107029022|ref|YP_626117.1| RNA binding S1 [Burkholderia cenocepacia AU 1054]
 gi|105898186|gb|ABF81144.1| RNA binding S1 [Burkholderia cenocepacia AU 1054]
          Length = 815

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            +        L          R  +     P VE M    ++  + +    + + G+   
Sbjct: 590 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKINKRIDDVLGNREALSGL--- 646

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEA----AREMIRSITDVPEVNKI--------YKGQVV 628
                 +D+   +      LAE+E      R   ++ T    V K+         +G V 
Sbjct: 647 -SPTEFVDERFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLVPGMMLEGVVT 705

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSM 687
            V  FGAFV     +DGLVH+S +ST+ +    +VVK G       +     R +I L+M
Sbjct: 706 NVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVIDVDVKRQRIALTM 765

Query: 688 KVVDQNTGKP 697
           + +D +   P
Sbjct: 766 R-LDDDAAAP 774


>gi|115465119|ref|NP_001056159.1| Os05g0535800 [Oryza sativa Japonica Group]
 gi|113579710|dbj|BAF18073.1| Os05g0535800 [Oryza sativa Japonica Group]
          Length = 592

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 546 LGEFTPRVEIMAIPPD--QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L  F P+ E+M  P +   ++N +G    V    +++   ++ I +              
Sbjct: 309 LRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEK------------- 355

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD 662
                   ++T + E   + +G V K+  +GA +      R GL+H+S ++  ++    D
Sbjct: 356 -----EAWAMTYLREG-TLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGD 409

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V+K G+ V   ++     G+I LS K ++   G
Sbjct: 410 VLKVGEEVKAIVIKSTAPGRIALSTKDLESEPG 442


>gi|46111359|ref|XP_382737.1| hypothetical protein FG02561.1 [Gibberella zeae PH-1]
          Length = 1782

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGL 646
            D  T  +  S  + +        +  +  +  ++  G+V KV +FGAF+   G     GL
Sbjct: 1258 DKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGL 1317

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             H SQ++ + V   + + KEGD V  ++L  D ++ ++   +K
Sbjct: 1318 CHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLK 1360



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   S     +   I +G V  V D G FV   G    LV IS LS   + +  D  + 
Sbjct: 1187 KDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQV 1246

Query: 667  GDTVWVKLLDFDDRGK-IKLSMK--VVDQN 693
               V  +++  D   + +++S+K  VVD++
Sbjct: 1247 DQLVKGRVVAVDKLTRHVEMSLKSSVVDED 1276



 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G ++KV+  GA + F G   G + IS++S   +    +  + G  V + +LD     K
Sbjct: 636 GTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDK 693



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            G  V       G V    LS  R+       ++G  V  ++L  + D+ +++L++K   
Sbjct: 555 SGLIVKVAEGISGFVPEQHLSDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLKKTI 614

Query: 692 QNTGKPIV 699
            N+  P+V
Sbjct: 615 VNSEAPVV 622


>gi|220679188|emb|CAX13319.1| programmed cell death 11 [Danio rerio]
          Length = 1816

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I  G VV + +FG  V F     GLV + +L+TE V    ++   G  V VK+L  D+ 
Sbjct: 535 RISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEE 594

Query: 681 GKI-KLSMKVVDQN 693
            K+ +LS K V + 
Sbjct: 595 KKMLRLSFKSVTEE 608



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           N    G V      L        + ++ +++    ++  G V  +M +G F+ F     G
Sbjct: 684 NYKKKGIVLTKKPHLKAYIEDGAIPKNFSELQVGMQMV-GWVKNIMPYGVFISFPYGVFG 742

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           L  I+ +  + + +TS +     TV  K+ + D+  
Sbjct: 743 LAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEK 778



 Score = 44.1 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +V +I +G V  +   G +V       G++    L+   +         
Sbjct: 432 IETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYP 491

Query: 667 GDTVWVKLLDFDDRGKIK-LSMKVVDQNTGKPI 698
           G  V  ++L  + + K+  L+ K     +  PI
Sbjct: 492 GLKVKCRVLLVEAQKKLLILTRKKALVESTLPI 524



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 614  TDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            T   E        V K+    G  +       GL H++ LS     K  +  KEG  +  
Sbjct: 1178 THKLEPGMNTLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRC 1237

Query: 673  KLLD 676
             +++
Sbjct: 1238 HVIE 1241


>gi|304315429|ref|YP_003850576.1| translation initiation factor 2, alpha subunit eIF2A
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588888|gb|ADL59263.1| predicted translation initiation factor 2, alpha subunit eIF2A
           [Methanothermobacter marburgensis str. Marburg]
          Length = 259

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + PE  ++  G V KV+++GAF        ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRRKNEWPEEGELVVGTVHKVLNYGAFATLEEYPGKEAFIHISEVSSGWVKNIRDFVRE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
              +  ++L  + R G + +SMK + ++
Sbjct: 61  NQKIVARVLRVNPRKGHVDVSMKRIRED 88


>gi|194874459|ref|XP_001973402.1| GG13362 [Drosophila erecta]
 gi|190655185|gb|EDV52428.1| GG13362 [Drosophila erecta]
          Length = 319

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
             R+   + G+L    GS+    G+T+ + +V       E    S           + NF
Sbjct: 46  EPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIV---APPKELLRASARRMNMGVLNCYVNF 102

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
              A+G+   + + + RE     +  +A+ PV+ +T    + L I   I + DG      
Sbjct: 103 AAFASGD---LDSVTERERHLSGMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTA 159

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKD 469
           +    +AL++ G+     V      + +D
Sbjct: 160 INCCGVALVECGISTYDLVTASTACIYRD 188



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VLA V   + L            L        +A G +           
Sbjct: 62  GSAYMEYGNTKVLAIVAPPKELLRASARRMNMGVLNCYVNFAAFASGDLDS--------V 113

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
           TE E  +S M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 114 TERERHLSGMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 173

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               V  +          LNP    ++
Sbjct: 174 TYDLVTASTACIYRDHVFLNPSAKIEE 200


>gi|19553245|ref|NP_601247.1| RNA binding protein [Corynebacterium glutamicum ATCC 13032]
 gi|62390881|ref|YP_226283.1| transcriptional accessory protein, RNA binding [Corynebacterium
           glutamicum ATCC 13032]
 gi|21324813|dbj|BAB99436.1| Predicted RNA binding protein, contains S1 domain [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326220|emb|CAF20382.1| PUTATIVE TRANSCRIPTIONAL ACCESSORY PROTEIN, RNA BINDING
           [Corynebacterium glutamicum ATCC 13032]
          Length = 758

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLDFDD 679
            I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ G       +    D
Sbjct: 643 MILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFISNPHEVVRSGEVVKVKVMEVDVD 702

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I LS+++ D+  G P
Sbjct: 703 RKRIGLSLRLTDE-PGAP 719


>gi|300769925|ref|ZP_07079804.1| YhgF like protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762401|gb|EFK59218.1| YhgF like protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 745

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G V  + +FGAFV     +DGLVH+SQL+   V+   +VVK    V V + + D+ R +I
Sbjct: 641 GIVTNITNFGAFVDIGVHQDGLVHLSQLANRFVSDPHEVVKVQQQVMVTVTEVDEKRNRI 700

Query: 684 KLSMKVVDQNTGKP 697
            LSMK  ++   +P
Sbjct: 701 GLSMKTEEKAAPRP 714


>gi|154800462|ref|NP_001082837.2| protein RRP5 homolog [Danio rerio]
          Length = 1816

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           +I  G VV + +FG  V F     GLV + +L+TE V    ++   G  V VK+L  D+ 
Sbjct: 535 RISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEE 594

Query: 681 GKI-KLSMKVVDQN 693
            K+ +LS K V + 
Sbjct: 595 KKMLRLSFKSVTEE 608



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +V +I +G V  +   G +V       G++    L+   +         
Sbjct: 432 IETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYP 491

Query: 667 GDTVWVKLLDFDDRGKIK-LSMKVVDQNTGKPI 698
           G  V  ++L  + + K+  L+ K     +  PI
Sbjct: 492 GLKVKCRVLSVEAQKKLLILTRKKALVESTLPI 524



 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           N    G V      L        + ++ +++    ++  G V  +M +G F+ F     G
Sbjct: 684 NYKKKGIVLTKKPHLKAYIEDGAVPKNFSELQVGMQMV-GWVKNIMPYGVFISFPYGVFG 742

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
           L  I+ +  + + +TS +     TV  K+ + D+  
Sbjct: 743 LAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEK 778



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 614  TDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            T   E        V K+    G  +       GL H++ LS     K  +  KEG  +  
Sbjct: 1178 THKLEPGMNTLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRC 1237

Query: 673  KLLD 676
             +++
Sbjct: 1238 HVIE 1241


>gi|302545248|ref|ZP_07297590.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
 gi|302462866|gb|EFL25959.1| 30S ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
          Length = 188

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +   D   V +  +GQV K++ FGAFV   G  +GLV + +L++  VA   + V+ G
Sbjct: 105 DPFQEFADTVGVGRRLQGQVTKLVPFGAFVQVAGGVEGLVPLQELTSTPVATPQEAVEVG 164

Query: 668 DTVWVKLLDFD 678
           D V V + D D
Sbjct: 165 DEVTVTVTDVD 175



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 599 SLAEIEAAREMIRSITDVPEVN--KIYKGQVVKVMDFGAFVHFCGARD-------GLVHI 649
            +  + AA E       +   +  +I  G +  +  FG FV    + D       G + I
Sbjct: 1   MVHGMGAATEDPELWAFLASRHRGEILSGTIAAIERFGVFVALDDSPDHPIFPGVGFISI 60

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            +LS  R    SDVV+ G  V    L FD   G+ +LS+K    + 
Sbjct: 61  PELSWRRFEAVSDVVQVGQRVSCVFLQFDTWNGEARLSLKATQSDP 106


>gi|86133351|ref|ZP_01051933.1| Transcriptional accessory protein [Polaribacter sp. MED152]
 gi|85820214|gb|EAQ41361.1| Transcriptional accessory protein [Polaribacter sp. MED152]
          Length = 707

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 13/189 (6%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM-----AIPPDQIRNV 566
           IS N +    +   +        +     ++ L      P    +          ++  +
Sbjct: 517 ISRNDIKKVPRLGGKAFEQAAGFLRIKHGKNPLDNSAVHPESYFLVDKMAKDMNKKVEEI 576

Query: 567 IGMGGKVI-----RGIVEQTGAKV--NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           IG    +      + I E  G     +I ++               + +          +
Sbjct: 577 IGNKELIQQIKLEKYITESIGLLTLKDIVNELEKPGLDPRAKTKVFSFDKNIKTIADLRI 636

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
            ++  G V  + +FG FV       GL+H+S LS   V   + +V     + VK+L+ D 
Sbjct: 637 GQLLPGIVNNITNFGCFVDIGIKESGLIHVSNLSDSYVKDVNTIVALRQQIVVKVLEVDV 696

Query: 679 DRGKIKLSM 687
            R +I+L++
Sbjct: 697 HRKRIQLAL 705


>gi|225426862|ref|XP_002276931.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 773

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 572 KVIRGIVEQTGAKVNI-----DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           + I+ +    G K+N+     D      I S    E E   E  RS+     +  I K +
Sbjct: 538 EKIKFLSSFVGQKINVNVVMADRKTRRLIFSGRPKEKEEMVEKKRSLMAKLSIGDIVKCR 597

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           + K+  FG FV   G    LVH +++S +     +   K G  V  K+   D    +I L
Sbjct: 598 IKKITYFGIFVEVEG-VPALVHQTEVSWDATLDPASYFKIGQIVEAKVHQLDFSLERIFL 656

Query: 686 SMKVVDQNT 694
           S+K +  + 
Sbjct: 657 SLKEITPDP 665


>gi|296131734|ref|YP_003638981.1| RNA binding S1 domain protein [Thermincola sp. JR]
 gi|296030312|gb|ADG81080.1| RNA binding S1 domain protein [Thermincola potens JR]
          Length = 122

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  + +FGAFV   G   GLVHIS+++   V    D +K+ D V VK++  
Sbjct: 4   EVGSILEGVVTGITNFGAFVELPGGETGLVHISEVAEAYVKDVKDYLKDKDKVKVKVIAI 63

Query: 678 DDRGKIKLSMKVVDQNT 694
            + GKI LS+K  +   
Sbjct: 64  -ENGKIGLSIKQANPKP 79


>gi|302776688|ref|XP_002971494.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
 gi|300160626|gb|EFJ27243.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
          Length = 606

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-------ARDGL 646
            ++      + A      S        +I  G++  +  FG F+           A   L
Sbjct: 270 PLSGHIEMSLTATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCL 329

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            H+S++S + +   S + K G  V VK+L  D +  +I L MK 
Sbjct: 330 CHVSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKA 373


>gi|145296007|ref|YP_001138828.1| hypothetical protein cgR_1931 [Corynebacterium glutamicum R]
 gi|140845927|dbj|BAF54926.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 758

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLDFDD 679
            I +G V  V  FGAFV     +DGLVH+S +S + ++   +VV+ G       +    D
Sbjct: 643 MILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFISNPHEVVRSGEVVKVKVMEVDVD 702

Query: 680 RGKIKLSMKVVDQNTGKP 697
           R +I LS+++ D+  G P
Sbjct: 703 RKRIGLSLRLTDE-PGAP 719


>gi|15679308|ref|NP_276425.1| translation initiation factor IF-2 subunit alpha
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|3122236|sp|O27363|IF2A_METTH RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|2622413|gb|AAB85786.1| translation initiation factor eIF-2, alpha subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 262

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + PE  ++  G V KV+++GAF        ++  +HIS++S+  V    D V+E
Sbjct: 4   MVRRKNEWPEEGELVVGTVHKVLNYGAFATLEEYPGKEAFIHISEVSSGWVKNIRDFVRE 63

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQN 693
              +  ++L  + R G + +SMK + ++
Sbjct: 64  NQKIVARVLRVNPRKGHVDVSMKRIRED 91


>gi|157877516|ref|XP_001687075.1| exosome-associated protein 4 [Leishmania major strain Friedlin]
 gi|68130150|emb|CAJ09461.1| putative exosome-associated protein 4 [Leishmania major strain
           Friedlin]
          Length = 221

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 74/228 (32%), Gaps = 18/228 (7%)

Query: 312 VRMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            R DGR+    VR I     +L   H S+    G T+ +  V        Q++       
Sbjct: 2   KRADGRESPRAVRAIHVATNVLANCHSSACVEIGKTRVLCGV-----RPPQHLVQEYRGT 56

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLR-IVSEI 429
           R       +    +    S +     R++    LA   +        + P  L  ++ E+
Sbjct: 57  RGRVSCQVH---RSLASSSNLDNSGDRDM---ALALEGVAEQAVVLERIPQLLVGVLIEV 110

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
              DG+   A      +AL   GV +    +  +  L  DG    I+ D++ +E      
Sbjct: 111 VHDDGALWDAATTALCVALTAGGVEVYDTFSACSAALRHDG---AIIVDLTREEAAAAMA 167

Query: 490 DFK--VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
                   +  G+            + + +V A  +  + R   L E 
Sbjct: 168 SVVVCSGLSLGGVYYCCHKGACEATTMSQLVQAATKGLQVRKVPLLEQ 215


>gi|300783475|ref|YP_003763766.1| transcriptional accessory protein [Amycolatopsis mediterranei U32]
 gi|299792989|gb|ADJ43364.1| transcriptional accessory protein [Amycolatopsis mediterranei U32]
          Length = 793

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 19/150 (12%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAK------VNIDDDGTVKIASSSLAEIEA----AREMIRS 612
           +R ++   G  IR ++  +           +D+   +   +  L+E++      R   ++
Sbjct: 578 VRRILSKTGTDIRALIGNSRTLSSLRPGEFVDETFGLPTVTDILSELDKPGRDPRPAFKT 637

Query: 613 ITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            T    V+KI         +G V  V  FGAF+     +DGL H+S LS   V    +VV
Sbjct: 638 ATFAEGVDKIGDLKPGMTLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPREVV 697

Query: 665 KEGDT-VWVKLLDFDDRGKIKLSMKVVDQN 693
           K GD      L     R +I L++++ D+ 
Sbjct: 698 KPGDIVKVKVLDVDVPRKRISLTLRLDDEP 727


>gi|227549007|ref|ZP_03979056.1| transcription accessory protein [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078917|gb|EEI16880.1| transcription accessory protein [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 755

 Score = 62.2 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDD 679
            I +G V  V  FGAFV     +DGLVH+S +S   VA   +VV+ G       L    +
Sbjct: 643 MILEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSRSFVADPHEVVRSGQVVKVKVLDVDVE 702

Query: 680 RGKIKLSMKVVD-QNTGKP 697
           R +I LS+++ D   + KP
Sbjct: 703 RQRIGLSLRLDDTPGSAKP 721


>gi|317133167|ref|YP_004092481.1| Tex-like protein protein-like protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471146|gb|ADU27750.1| Tex-like protein protein-like protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 717

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK-EGDTVWVKLLDFDD 679
            I  G V  V+DFGAFV     +DGLVHIS+++   +   S+++        V L     
Sbjct: 645 MILTGTVRNVIDFGAFVDIGVHQDGLVHISEIADRFIRHPSELLSVGDVVKVVVLAVDAP 704

Query: 680 RGKIKLSMKVVDQ 692
           + +I LS+K V Q
Sbjct: 705 KKRISLSIKQVKQ 717


>gi|172060758|ref|YP_001808410.1| RNA-binding S1 domain-containing protein [Burkholderia ambifaria
           MC40-6]
 gi|171993275|gb|ACB64194.1| RNA binding S1 domain protein [Burkholderia ambifaria MC40-6]
          Length = 813

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     
Sbjct: 696 MLLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 755

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M++ D+   
Sbjct: 756 RQRIALTMRLDDEAAA 771


>gi|116689819|ref|YP_835442.1| RNA-binding S1 domain-containing protein [Burkholderia cenocepacia
           HI2424]
 gi|116647908|gb|ABK08549.1| RNA binding S1 domain protein [Burkholderia cenocepacia HI2424]
          Length = 774

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            +        L          R  +     P VE M    ++  + +    + + G+   
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKINKRIDDVLGNREALSGL--- 605

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEA----AREMIRSITDVPEVNKI--------YKGQVV 628
                 +D+   +      LAE+E      R   ++ T    V K+         +G V 
Sbjct: 606 -SPTEFVDERFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLVPGMMLEGVVT 664

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSM 687
            V  FGAFV     +DGLVH+S +ST+ +    +VVK G       +     R +I L+M
Sbjct: 665 NVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVIDVDVKRQRIALTM 724

Query: 688 KVVDQNTGKP 697
           + +D +   P
Sbjct: 725 R-LDDDAAAP 733


>gi|225019408|ref|ZP_03708600.1| hypothetical protein CLOSTMETH_03361 [Clostridium methylpentosum
           DSM 5476]
 gi|224947825|gb|EEG29034.1| hypothetical protein CLOSTMETH_03361 [Clostridium methylpentosum
           DSM 5476]
          Length = 306

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 17/180 (9%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQ--LGEFTPRVEIMAIPPDQIRNVIGMG 570
           S+ I+             I+N         R +  LG        +AI    I  V    
Sbjct: 30  SQRILESRAVMCDSEHNLIVNLGYMRGIIPRCEGALGIQEGTTRDIAI----ISRVNKPV 85

Query: 571 GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKV 630
             VI G  E        D +G      S     E  RE   +         + K     +
Sbjct: 86  SFVITGFTE--------DAEGNPVALLSRKRAQELCRENYIAS---LRPGDVIKAVATHL 134

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
             FG FV        L+ I  +S  R++   D  K G  ++  +   +  G+I LS K +
Sbjct: 135 EPFGCFVDIGCGIASLIPIDSISVSRISHPRDRFKTGQELYAVVKSIEADGRICLSHKEL 194


>gi|284050747|ref|ZP_06380957.1| cell divisionFtsK/SpoIIIE [Arthrospira platensis str. Paraca]
 gi|291570122|dbj|BAI92394.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1129

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            P+   +Y G V  +   GA+V F     G V   +L   R+ +  + V  G  V VK+ 
Sbjct: 353 KPKQGNVYSGYVTSLTSGGAYVEFLPNTQGFVPTPKLVDRRIYRPEEAVSVGQKVVVKVH 412

Query: 676 DFDDRGKIKLS 686
             + R +I+L+
Sbjct: 413 SINSRDEIELT 423


>gi|260219479|emb|CBA26324.1| hypothetical protein Csp_E34120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 127

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +   I +G V  V  FGAF+     +DGLVH+SQL+ + V    +VVK GD V V++++
Sbjct: 1   MKEGMILEGTVSNVAQFGAFIDLGVHQDGLVHVSQLAHKFVNDAREVVKTGDIVKVQVVE 60

Query: 677 FDD-RGKIKLSMK 688
            D  R +I L+MK
Sbjct: 61  VDVARKRIGLTMK 73


>gi|50303899|ref|XP_451897.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641029|emb|CAH02290.1| KLLA0B08239p [Kluyveromyces lactis]
          Length = 1729

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 558  IPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +P  ++ +  I    K  R      G  VN D+D  V    +        +  +      
Sbjct: 1187 VPVSKLTDAFIKDWKKFFRRGQSVVGKVVNCDNDDRV--LLTLRESEVNGQLNVLKSYSD 1244

Query: 617  PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              V  I++G V  V DFG FV   G     GL H S+++  ++    ++  EGD V   +
Sbjct: 1245 INVGDIFQGSVKNVTDFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIV 1304

Query: 675  LDFDDRGK-IKLSMKV 689
            L  +   K I L +K 
Sbjct: 1305 LKTNPEKKQISLGLKA 1320



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 575  RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
            + IV  T   V+ID++       SS       ++     +   +   I +G V  + D G
Sbjct: 1120 KNIVSATVLNVDIDNNKINLSLRSSSP-----KDRTIISSSELKRGDIVRGFVKSITDKG 1174

Query: 635  AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
             F+         V +S+L+   +       + G +V  K+++ D+  ++ L+++ 
Sbjct: 1175 VFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSVVGKVVNCDNDDRVLLTLRE 1229



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGM-GGKVIRGIVEQTGAKVNIDDDGTV-------KIA 596
           ++   + +   + I  DQ +  +        R +  +   K+     G V       ++ 
Sbjct: 503 EIVTVSGKGIELKIFNDQFKAFVPPLHISDTRLVYPERKFKIGSKVKGRVLNVDSVGRVT 562

Query: 597 SSSLAEIEAAREM------IRSITDVPEVNKIYKGQVVKV-MDFGAFVHFCGARDGLVHI 649
            +    I  A E               E  ++     V++    G  + F       V  
Sbjct: 563 VTLKKSIVNADEESVTLVCKNDDIQTVESQELKTIGTVEIFKPNGCVISFFNNIKAFVPN 622

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            ++S   V K  + ++ G +V VK+L+ D +R +I  S K+  +++ K
Sbjct: 623 KEISEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAESSSK 670


>gi|291533802|emb|CBL06915.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Megamonas hypermegale ART12/1]
          Length = 153

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 46/75 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  I +G V  +  FGAFV   G + GLVHIS+++   V   +D +KE D V VK+L  
Sbjct: 4   EVGNILEGVVTGITKFGAFVELPGGKVGLVHISEVADVYVKDVNDFLKEKDKVKVKVLSV 63

Query: 678 DDRGKIKLSMKVVDQ 692
           DD GKI LS+K + +
Sbjct: 64  DDHGKIGLSIKQLQE 78


>gi|219111547|ref|XP_002177525.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217412060|gb|EEC51988.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 65

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           V      +V  +  +GAF+ F    DGL+HISQLS   +   S+++K G  V V++ + 
Sbjct: 4   VGDTVTAKVKSIASYGAFMDFGAQTDGLLHISQLSVGYIKDVSEILKPGQEVEVRITNI 62


>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
           str. IM2]
 gi|29336869|sp|Q8ZVN0|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
 gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
          Length = 274

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 98/278 (35%), Gaps = 45/278 (16%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                 ++ + +R ++   K R+DGR  E  R++   VG+++   GS+    G T  +  
Sbjct: 9   KRFISYLRREQIRRLLA-TKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAG 67

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           V +G  +                +++   LP A+     +G P    I   R+  R I  
Sbjct: 68  VKVGLGQP-----FPDAPDEGVLVVNAEVLPHASPYTE-VGPPDEFAIELARVVDRGIRH 121

Query: 412 V-------LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI--------- 455
                   L       Y L I   +   DG+        S  AL +  +P+         
Sbjct: 122 CGYVDFKKLAVEGGKAYVLWIDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVV 181

Query: 456 ---------------SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
                            P+A +++G + +    ++  D + +E+           ++  I
Sbjct: 182 KLDRNNKAPLPVDISKAPIA-VSVGKIGN----VLFLDPTFEEELSLDGRITFTFSEDKI 236

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
            A Q  +  G  +++ +  AL  A RGR  +L  +   
Sbjct: 237 VAAQKTL--GYFTQSEIEAALNLALRGRDRLLEALKSA 272



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 89/247 (36%), Gaps = 48/247 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           R +++  G + + +DG+     G+T V+A V V          D   L VN +   +A  
Sbjct: 39  RNVEINVGVV-KTADGSAEVKLGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASP 97

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---------LFSKCYKNETQVIINVMQHDL 122
               G       P E  I ++R++DR IR                     + + V+  D 
Sbjct: 98  YTEVGP------PDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWIDLYVIN-DD 150

Query: 123 ESSPHVVSMVAASAALMLSGLPF------------------------EGPVVGAQVDYIN 158
            +   V + +A+ AAL  + LP                         + P+    V  I 
Sbjct: 151 GNLIDV-ANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPI-AVSVGKIG 208

Query: 159 GQYVLNPRLDEDQGSLD--LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
               L+P  +E + SLD  +  + ++D ++  +      ++  +  A+         ++E
Sbjct: 209 NVLFLDPTFEE-ELSLDGRITFTFSEDKIVAAQKTLGYFTQSEIEAALNLALRGRDRLLE 267

Query: 217 AISKLAK 223
           A+    K
Sbjct: 268 ALKSALK 274


>gi|134295829|ref|YP_001119564.1| RNA-binding S1 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134138986|gb|ABO54729.1| RNA binding S1 domain protein [Burkholderia vietnamiensis G4]
          Length = 775

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     
Sbjct: 657 MLLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 716

Query: 680 RGKIKLSMKVVDQ 692
           R +I L+M++ D+
Sbjct: 717 RQRIALTMRLDDE 729


>gi|146337793|ref|YP_001202841.1| transcriptional accessory protein [Bradyrhizobium sp. ORS278]
 gi|146190599|emb|CAL74601.1| Putative transcriptional accessory protein containing S1
           RNA-binding domain [Bradyrhizobium sp. ORS278]
          Length = 771

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A  +         +   I +  V  V  FGAF      +DG
Sbjct: 618 DIIKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDG 677

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           L+HIS +S +R+    +VVK G  V VK+LD D  R +I L++++ D    K
Sbjct: 678 LIHISAMSEKRINDPREVVKPGQVVKVKVLDVDVPRQRISLTLRLSDPLPAK 729


>gi|170703039|ref|ZP_02893866.1| RNA binding S1 domain protein [Burkholderia ambifaria IOP40-10]
 gi|170132047|gb|EDT00548.1| RNA binding S1 domain protein [Burkholderia ambifaria IOP40-10]
          Length = 774

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     
Sbjct: 657 MLLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 716

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M++ D+   
Sbjct: 717 RQRIALTMRLDDEAAA 732


>gi|302811444|ref|XP_002987411.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
 gi|300144817|gb|EFJ11498.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
          Length = 378

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV------ 647
            ++      + A      S        +I  G++  +  FG F+    +   LV      
Sbjct: 216 PLSGHIEMSLTATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLPESHVFLVCAPGCL 275

Query: 648 -HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            H+S++S   +   S + K G  V VK+L  D +  ++ L MK 
Sbjct: 276 CHVSEVSYNFIQDLSTLYKVGQWVQVKILKVDAETKRVSLGMKA 319


>gi|221061203|ref|XP_002262171.1| RNA-binding protein [Plasmodium knowlesi strain H]
 gi|193811321|emb|CAQ42049.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
          Length = 1125

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 86/247 (34%), Gaps = 15/247 (6%)

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGD---EDHLGHMDFKVAGTDS--GITAMQMDMKIG 510
              V  +  G +   +      DI+     E H   M + +        +    +     
Sbjct: 592 KLYVGKLIFGKIFKIEKTYAYVDINYAFYAELHEDQMPYNIKNMKDVFKVNDKLVFEIYK 651

Query: 511 GISENIMVMALQ-QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
              E I++     Q       IL+  ++ +      +         +++  + I   I +
Sbjct: 652 MYPEKILLTLKNIQKVNDLNKILHYKTQDMPFDVKVVTILK---NGISVSYNDIYAFIHI 708

Query: 570 GGKVIRGIVE-QTGAKVN---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
                +  V+ +   K+    ++    V     S                   +  I + 
Sbjct: 709 SALSSKYKVKVEENEKIQESLLNQKIKVICTDISKLNFSNLIYEQNEQLKKLNIYDIVQV 768

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           +++ +  +G  V  C    GL+HIS++S +++   +DV K GD +   L++ D D  +  
Sbjct: 769 EIIHISKYGLMVK-CDDIVGLIHISEISKKKIDDLNDVFKIGDQLKGVLINIDYDNKRFS 827

Query: 685 LSMKVVD 691
           LS K+++
Sbjct: 828 LSTKILE 834


>gi|115351787|ref|YP_773626.1| RNA-binding S1 domain-containing protein [Burkholderia ambifaria
           AMMD]
 gi|115281775|gb|ABI87292.1| RNA binding S1 domain protein [Burkholderia ambifaria AMMD]
          Length = 774

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     
Sbjct: 657 MLLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 716

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M++ D+   
Sbjct: 717 RQRIALTMRLDDEAAA 732


>gi|32472440|ref|NP_865434.1| RNA binding protein [Rhodopirellula baltica SH 1]
 gi|32443676|emb|CAD73118.1| conserved hypothetical protein-putative RNA binding protein
           [Rhodopirellula baltica SH 1]
          Length = 750

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 569 MGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            G   IR I+ + G    +   +  V     S+  +E  RE             + +G +
Sbjct: 637 FGIPTIRDIIAELGKPGRDPRSEFKVAQFDDSVQSMEDLRE-----------GMVLEGVI 685

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V  FGAF+     +DGL+H+SQL+ + V+  S+VV  GD V VK+L+ D DR +I +S
Sbjct: 686 TNVTHFGAFIDLGVHQDGLIHVSQLANQFVSDPSEVVSVGDVVKVKVLEIDLDRKRIAVS 745

Query: 687 MKVV 690
            K +
Sbjct: 746 KKAL 749


>gi|269991313|emb|CAX12497.1| 30S ribosomal protein S1 [Fucus vesiculosus]
          Length = 260

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  IY G +V + DFG F++  G +  LVHIS++        +   K GD + +K++  D
Sbjct: 190 LEAIYLGNIVSIKDFGIFINILGIK-CLVHISEICQNPTIDLTSFYKRGDQISLKIISKD 248

Query: 679 -DRGKIKLSM 687
            +RGKI +++
Sbjct: 249 IERGKISITL 258


>gi|257439049|ref|ZP_05614804.1| ribosomal protein S1 [Faecalibacterium prausnitzii A2-165]
 gi|257198539|gb|EEU96823.1| ribosomal protein S1 [Faecalibacterium prausnitzii A2-165]
          Length = 311

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   +   + G        L+  EA R       D  +   I    V  +  FGAF    
Sbjct: 83  TCFVIEGMETGENGQPCYLLSRAEAQRMCKAEYLDTLQPGDILPCTVTHIEPFGAFCDVG 142

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
                L+ I  +S  R++  +D V  G  +   +   D +G+  L+++ +
Sbjct: 143 CGISALLPIDCMSVSRISSPADRVSVGQQILCAIKSRDVQGRFVLTIREL 192


>gi|76811207|ref|YP_333734.1| transcription accessory protein, TEX [Burkholderia pseudomallei
           1710b]
 gi|76580660|gb|ABA50135.1| transcription accessory protein, TEX [Burkholderia pseudomallei
           1710b]
          Length = 821

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 596 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 655

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 656 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 715

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 716 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 775


>gi|325528639|gb|EGD05727.1| RNA-binding S1 domain-containing protein [Burkholderia sp. TJI49]
          Length = 775

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM-----GGKVIRGIVEQTG--AKVN 586
           + S V  E+   +     R+        +I +V+G      G      + E+ G     +
Sbjct: 569 DRSSVHPEAYPVVERMLARIS------KRIDDVLGNRDALSGLSPSEFVDERFGLPTVRD 622

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           I  +              A                  +G V  V  FGAFV     +DGL
Sbjct: 623 ILSELEKPGRDPRPEFKTATFREGVEKVSDLVPGMTLEGVVTNVAAFGAFVDVGVHQDGL 682

Query: 647 VHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQ 692
           VH+S +ST+ +    +VVK G       L     R +I L+M++ D+
Sbjct: 683 VHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRISLTMRLDDE 729


>gi|255714000|ref|XP_002553282.1| KLTH0D13156p [Lachancea thermotolerans]
 gi|238934662|emb|CAR22844.1| KLTH0D13156p [Lachancea thermotolerans]
          Length = 1731

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 558  IPPDQIRN-VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +P  ++ +  I    K  + +    G  VN DDD  + +           R  I    + 
Sbjct: 1205 VPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDSHILVTLKESEVNGELR--ILKSYND 1262

Query: 617  PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
             +V +I++G V  V DFG FV         GL H ++++   V   + +   GD V   +
Sbjct: 1263 IKVGEIFEGAVKNVTDFGLFVKLDNTVNVTGLAHKTEVADSAVGDLASIFGVGDKVKAIV 1322

Query: 675  LDFD-DRGKIKLSMKV 689
            L  + D+ ++ L +K 
Sbjct: 1323 LKVNPDKKQLSLGLKA 1338



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
              G  V F     G +  S +S   V +  D ++ G TV VK+L  + ++ ++
Sbjct: 619 KPNGCIVSFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVKVLQHNKEQNRV 672



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 581  TGAKVNID-DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
            +   ++ID DDG + ++  S       R+      +  +   + +G V K+ + G F++ 
Sbjct: 1142 SAKVISIDKDDGKLNLSLRSEN----PRDGTAKTHEDLKRGDVVRGLVKKITEKGIFIYL 1197

Query: 640  CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
                   V +S+L+   +       K   +V  K+++ DD   I +++K 
Sbjct: 1198 SSTLQAFVPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDSHILVTLKE 1247



 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 606  AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV- 664
            AR           V      +++K+ D    +       G+   +    +      DV  
Sbjct: 1075 ARTHDIKGIKDINVGDCLPARLLKITDSYLLLELGENVRGVAFATDALDDYSKPLKDVYA 1134

Query: 665  -KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
             ++   V  K++  D D GK+ LS++  +   G
Sbjct: 1135 NQKNSIVSAKVISIDKDDGKLNLSLRSENPRDG 1167


>gi|213405933|ref|XP_002173738.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
 gi|212001785|gb|EEB07445.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1703

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 593  VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            +   +S   E +  ++      +  E+N++Y+G V  V D G FV       G V I++L
Sbjct: 1133 LSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTLGRNVVGRVKIAEL 1192

Query: 653  STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                + +     +    V  K++  D ++ +I+LS+K
Sbjct: 1193 FDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLK 1229



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             AKV   D    +I  S      +++E         EV     G V++  DFG  +   G
Sbjct: 1211 KAKVVHVDQEKKRIELSLKPSRVSSKEASAKEFSEIEVGSNVDGTVIRCEDFGVLIRLDG 1270

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 GL H S+++   V   + +   GD V   +L  D ++ ++ L +K
Sbjct: 1271 TDNIVGLCHKSEIADTTVNDVTKLYSAGDKVRAHVLSVDPEKRRVALGLK 1320



 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
            G   ++++ GA V F     G +  +++S   +    D  K G TV V +++ D +  K
Sbjct: 597 VGVFARILNTGAVVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQTVSVTVVNCDPETRK 656

Query: 683 IKLSMKV 689
           ++LS + 
Sbjct: 657 MRLSCRE 663



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 625  GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            G++  + D G  V   GA  G V  + +S +     + +      V V +L  D    KI
Sbjct: 1072 GRISNINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSRNQFVRVYVLSVDVPNRKI 1131

Query: 684  KLSMKVVDQNTGKPI 698
             LS +      GK I
Sbjct: 1132 ALSTRASHFEEGKEI 1146



 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            +      D   V K+ KG VV++   G  V      +GLV  + ++  ++       KE
Sbjct: 491 IDQPFLRVDDIPVGKVIKGSVVRLFAQGVIVKLSEGINGLVPTAHMADVQLHFPERKFKE 550

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           G  V  ++L  D DR ++ L++K    N+  PI+
Sbjct: 551 GLPVKCRVLAVDSDRKRVLLTLKKSLLNSDLPII 584



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +++          SL +   A  + ++++D+ E  K Y G V  + +FG F+ F      
Sbjct: 742 DLEKRIVFLTLKQSLIDAAKAGMLPKTLSDLKEGVK-YAGFVKNITEFGVFIEFANGVTA 800

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           L   + LS   V   + + K   ++       D ++ +  +S+K +D+   K
Sbjct: 801 LAPKAYLSENYVPLPAALFKPFQSLTCVCFSIDMEKERALVSLKPLDKVNEK 852


>gi|89901260|ref|YP_523731.1| RNA-binding S1 [Rhodoferax ferrireducens T118]
 gi|89345997|gb|ABD70200.1| RNA binding S1 [Rhodoferax ferrireducens T118]
          Length = 807

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   + +G V  V  FGAFV     +DGLVH+SQLS + V    ++VK GD V 
Sbjct: 674 EDIKDLKEGMVLEGTVSNVAAFGAFVDLGVHQDGLVHVSQLSHKFVTDAREIVKTGDIVK 733

Query: 672 VKLLDFDD-RGKIKLSMK 688
           V++++ D  R +I L+MK
Sbjct: 734 VQVVEVDVARKRIALTMK 751


>gi|325292030|ref|YP_004277894.1| Transcriptional accessory protein [Agrobacterium sp. H13-3]
 gi|325059883|gb|ADY63574.1| Transcriptional accessory protein [Agrobacterium sp. H13-3]
          Length = 812

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 12/98 (12%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             K  ID+   +      +AE+E      R   ++ T    V++I         +G V  
Sbjct: 642 DPKRFIDEQFGLPTVKDIIAELEKPGRDPRPSFKTATFADGVDEITDLKPGMLLEGTVTN 701

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 702 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 739


>gi|167823883|ref|ZP_02455354.1| transcription accessory protein, TEX [Burkholderia pseudomallei 9]
          Length = 748

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|167910655|ref|ZP_02497746.1| transcription accessory protein, TEX [Burkholderia pseudomallei
           112]
          Length = 750

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|167738286|ref|ZP_02411060.1| putative tex protein [Burkholderia pseudomallei 14]
 gi|167893963|ref|ZP_02481365.1| putative tex protein [Burkholderia pseudomallei 7894]
          Length = 748

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|160945370|ref|ZP_02092596.1| hypothetical protein FAEPRAM212_02892 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443101|gb|EDP20106.1| hypothetical protein FAEPRAM212_02892 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105438|emb|CBL02982.1| Ribosomal protein S1 [Faecalibacterium prausnitzii SL3/3]
          Length = 311

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 3/106 (2%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++ D+DG       S AE +   +     T  P    I    V  +  FGAF        
Sbjct: 90  LDTDEDG-APCYRLSRAEAQRLCKAEYLDTLSP--GDILPCTVTHIEPFGAFCDVGCGIS 146

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
            L+ I  +S  R++  +D V  G  +   + + D +G+  L+++ +
Sbjct: 147 ALLPIDCMSVSRISSPADRVSVGQQILCAIKNRDAQGRFVLTIREL 192


>gi|195354294|ref|XP_002043633.1| GM15571 [Drosophila sechellia]
 gi|194127801|gb|EDW49844.1| GM15571 [Drosophila sechellia]
          Length = 327

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R+   + G+L    GS+    G+T+ + +V       E    S           + NF  
Sbjct: 48  RNTFIRAGVLTTVRGSAYMEYGNTKVLTIV---APPKELIRASARRMNMGVLNCYVNFAA 104

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
             TG++  +     RE     +  +A+ PV+ +T    + L I   I + DG      + 
Sbjct: 105 FGTGDLDSVPE---RERYLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAIN 161

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKD 469
              +AL++ G+     +      + +D
Sbjct: 162 CCGVALVECGISTYDLITASTACIYRD 188



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 12/147 (8%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQDFF----PLTVNYQERTYAVGKIPGGYLRRESRP 84
           G+    YG T VL  V   + L            L        +  G +           
Sbjct: 62  GSAYMEYGNTKVLTIVAPPKELIRASARRMNMGVLNCYVNFAAFGTGDLDS--------V 113

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E E  +S M+ +++ P+  +      Q+ I V+  D +      ++     AL+  G+ 
Sbjct: 114 PERERYLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGIS 173

Query: 145 FEGPVVGAQVDYINGQYVLNPRLDEDQ 171
               +  +          LNP    ++
Sbjct: 174 TYDLITASTACIYRDHVFLNPSAKIEE 200


>gi|167815472|ref|ZP_02447152.1| transcription accessory protein, TEX [Burkholderia pseudomallei 91]
          Length = 747

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|322698144|gb|EFY89917.1| rRNA biogenesis protein RRP5, putative [Metarhizium acridum CQMa 102]
          Length = 1796

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 593  VKIASSSLAEIEAAREMIRSITDVPEVNKI-----YKGQVVKVMDFGAF--VHFCGARDG 645
            V  A   +     A  +    T     N I       G+V KV +FGAF  V       G
Sbjct: 1263 VDSALKQVEMSLKASAVDEDYTPPVSYNDIKEGSVVTGKVRKVEEFGAFILVDNSNNVSG 1322

Query: 646  LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK--VVDQNT 694
            L H S+++ E V   + + KEGD V   +L+ D  + +I   +K  + D++T
Sbjct: 1323 LCHRSEMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLKPSLFDEDT 1374



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
             + +G V  V D G FV   G    LV I+ LS   +    D  +    V  ++L  D  
Sbjct: 1207 DVVRGFVKNVSDKGLFVALGGHITALVKIANLSDRFLKDWKDHFQVDQLVKGRVLSVDSA 1266

Query: 681  -GKIKLSMK--VVDQNTGKPI 698
              ++++S+K   VD++   P+
Sbjct: 1267 LKQVEMSLKASAVDEDYTPPV 1287



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
             G ++K+   GA + F G   G + +S++S   +   ++  + G  V V +L  D   +
Sbjct: 641 VPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQR 700



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 613  ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                 + N +  G++ KV +    V       G VH+  ++       +   K+   V V
Sbjct: 1105 DWTSLKQNMVLPGKITKVNERQVMVKLSDIVSGPVHLPDMADNYDDINTLNYKKNQIVRV 1164

Query: 673  KLLDFD-DRGKIKLSMK 688
             +++ D +  +++LSM+
Sbjct: 1165 AIVEVDANNKRLRLSMR 1181



 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  +       G V    LS  ++       +EG  V  ++L  +   K I+ ++K    
Sbjct: 563 GLILKIADGITGYVAERHLSDIKLQHPEKKFREGMKVKARVLSTNPFKKQIRFTLKKTLV 622

Query: 693 NTGKPIV 699
           N+  P++
Sbjct: 623 NSDAPVI 629


>gi|302538867|ref|ZP_07291209.1| 30S ribosomal protein S1 [Streptomyces sp. C]
 gi|302447762|gb|EFL19578.1| 30S ribosomal protein S1 [Streptomyces sp. C]
          Length = 225

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +  +   D   V +   G+V K++ FG FV      +GLV + +L+   V    ++V  G
Sbjct: 134 DPFQIFADDTSVGQTLPGRVTKLVPFGVFVEVAKGIEGLVPLLELAWTPVEAPEEIVGVG 193

Query: 668 DTVWVKLLDFDDR 680
           D   V + + D +
Sbjct: 194 DEFRVVVTEVDRQ 206



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD-------G 645
           V  A    A   A    +       E+ +   G+V  +  FG FV              G
Sbjct: 26  VTRAIGWRAMDIAETPRLWEFLSSLEIGERISGRVASIESFGVFVALDEGPAHPVYPGVG 85

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            +  ++L+ +R    +++V+ G  V  + L FD   G+ +LS+K    + 
Sbjct: 86  FISYAELAWQRFDAATEIVQVGQRVTCEFLQFDTWNGEARLSLKATQPDP 135


>gi|167719286|ref|ZP_02402522.1| putative tex protein [Burkholderia pseudomallei DM98]
          Length = 747

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|327538498|gb|EGF25162.1| transcriptional accessory protein [Rhodopirellula baltica WH47]
          Length = 711

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 569 MGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
            G   IR I+ + G    +   +  V     S+  +E  RE             + +G +
Sbjct: 598 FGIPTIRDIIAELGKPGRDPRSEFKVAQFDDSVQSMEDLRE-----------GMVLEGVI 646

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             V  FGAF+     +DGL+H+SQL+ + V+  S+VV  GD V VK+L+ D DR +I +S
Sbjct: 647 TNVTHFGAFIDLGVHQDGLIHVSQLANQFVSDPSEVVSVGDVVKVKVLEIDLDRKRIAVS 706

Query: 687 MKVV 690
            K +
Sbjct: 707 KKAL 710


>gi|308509680|ref|XP_003117023.1| CRE-CRN-5 protein [Caenorhabditis remanei]
 gi|308241937|gb|EFO85889.1| CRE-CRN-5 protein [Caenorhabditis remanei]
          Length = 214

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 33/228 (14%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR--------EDEQYVDSLSGTQRND 373
           +R++  ++  L+   GS+ F +G T      + G          E+   +D         
Sbjct: 5   LREMRCELSFLKNADGSACFSQGSTCIWASCS-GPGDVHASKANEEAMTLDI-------S 56

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
           +  +      +                   + +  I   +        T+ +     + D
Sbjct: 57  YRANCGDNKFSV---------------LNNIIQSTISKAINLELFPHTTIAVTIHGIQDD 101

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           GS     + G+  AL+D G+P      G+ +  VK  D+ II      +    G + F V
Sbjct: 102 GSIGAVAINGACFALLDNGMPFEAVFCGVLVVRVK--DELIIDPTAKQEASSTGRVLFAV 159

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
                G   +     IG    N +  A   A+     I      V+  
Sbjct: 160 FNGTDGHPEVCSMDAIGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQR 207



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 31/170 (18%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + +DG+   + G T + A+      +      ++   L ++Y+                 
Sbjct: 16  KNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYR------ANCGDNKF--- 66

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE----TQVIINVMQHDLESSPHVVSMVAASAA 137
                       +++  I+   SK    E    T + + +     + S   V++  A  A
Sbjct: 67  -----------SVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACFA 115

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQD 183
           L+ +G+PFE    G  V  +  + +++P   ++  S    L    +GT  
Sbjct: 116 LLDNGMPFEAVFCGVLVVRVKDELIIDPTAKQEASSTGRVLFAVFNGTDG 165


>gi|294654809|ref|XP_456890.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
 gi|199429165|emb|CAG84867.2| DEHA2A12914p [Debaryomyces hansenii]
          Length = 302

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 96/259 (37%), Gaps = 38/259 (14%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           + +K    + + ++ VR +  + GL+   +GS+    GDT  I V   G R        +
Sbjct: 43  LNNKPTTENKKRNDEVRKMFLKSGLVTNANGSAYLEVGDT-IIEVSVFGPRP-------I 94

Query: 367 SGT--QRNDFMMHYNFLPCAT--GEVSRMGAP-----SRR------EIGHGRLARRAIHP 411
            G+   R  F +   FLP  T   E++  G       + R      E         ++ P
Sbjct: 95  RGSFIDRASFSVECKFLPYVTQPNEITFNGKATNFNNNGRPSLTNIEQKISSYLETSLLP 154

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSSMAT---------VCGSSLALMDAGVPISKPVAGI 462
            +        T+ I   +  ++ + +  +         +  SSLAL+D+G+ +   V   
Sbjct: 155 CILLEKYPKSTIDIFVSVISTNSNPNSNSSLLNLINWIINCSSLALVDSGIELKDIVTSG 214

Query: 463 AMGLVKDGDDFII-----LSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
            + L +  ++  +     +  I  ++     + F +   +  I    ++ K   ++E I+
Sbjct: 215 QVNLNQKSNELTLDPIYPVDTIDKEDSIDCLVSF-MNLRNDEIVGFWVEGKQEELNETIV 273

Query: 518 VMALQQAKRGRLHILNEMS 536
              +         I + ++
Sbjct: 274 TQLIDGCNEMSKQIRSNIN 292



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 91/233 (39%), Gaps = 36/233 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ----------DFFPLTVNY 63
           R + L++G +   ++G+     G+T++  +V   R ++              F P     
Sbjct: 59  RKMFLKSGLV-TNANGSAYLEVGDTIIEVSVFGPRPIRGSFIDRASFSVECKFLPYVTQP 117

Query: 64  QERTYAVGKIPGGYLRRESRPT--ENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQ 119
            E T+              RP+    E  IS  ++ S+ P  L  K  K+   + ++V+ 
Sbjct: 118 NEITFNGKAT---NFNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFVSVIS 174

Query: 120 HDLESSPHVVS-------MVAASAALMLSGLPFEGPVVGAQVDYIN--GQYVLNPRLD-- 168
            +   + +          +  +S AL+ SG+  +  V   QV+      +  L+P     
Sbjct: 175 TNSNPNSNSSLLNLINWIINCSSLALVDSGIELKDIVTSGQVNLNQKSNELTLDPIYPVD 234

Query: 169 --EDQGSLD-LF--VSGTQDAVLM--VELEANQLSEDVVLDAIIFGHNECKPV 214
             + + S+D L   ++   D ++   VE +  +L+E +V   I   +   K +
Sbjct: 235 TIDKEDSIDCLVSFMNLRNDEIVGFWVEGKQEELNETIVTQLIDGCNEMSKQI 287


>gi|53719161|ref|YP_108147.1| putative transcription accessory protein [Burkholderia pseudomallei
           K96243]
 gi|254189042|ref|ZP_04895553.1| putative tex protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254261867|ref|ZP_04952921.1| putative tex protein [Burkholderia pseudomallei 1710a]
 gi|52209575|emb|CAH35528.1| putative transcription accessory protein [Burkholderia pseudomallei
           K96243]
 gi|157936721|gb|EDO92391.1| putative tex protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254220556|gb|EET09940.1| putative tex protein [Burkholderia pseudomallei 1710a]
          Length = 774

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|226197337|ref|ZP_03792914.1| putative tex protein [Burkholderia pseudomallei Pakistan 9]
 gi|225930716|gb|EEH26726.1| putative tex protein [Burkholderia pseudomallei Pakistan 9]
          Length = 774

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|237812533|ref|YP_002896984.1| tex domain protein [Burkholderia pseudomallei MSHR346]
 gi|254179567|ref|ZP_04886166.1| putative tex protein [Burkholderia pseudomallei 1655]
 gi|184210107|gb|EDU07150.1| putative tex protein [Burkholderia pseudomallei 1655]
 gi|237504765|gb|ACQ97083.1| tex domain protein [Burkholderia pseudomallei MSHR346]
          Length = 774

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|53723516|ref|YP_102989.1| transcription accessory protein, TEX [Burkholderia mallei ATCC
           23344]
 gi|67641333|ref|ZP_00440114.1| putative tex protein [Burkholderia mallei GB8 horse 4]
 gi|121599721|ref|YP_993138.1| putative tex protein [Burkholderia mallei SAVP1]
 gi|124384978|ref|YP_001026086.1| putative tex protein [Burkholderia mallei NCTC 10229]
 gi|126438941|ref|YP_001059209.1| putative tex protein [Burkholderia pseudomallei 668]
 gi|126449225|ref|YP_001080644.1| putative tex protein [Burkholderia mallei NCTC 10247]
 gi|126452035|ref|YP_001066475.1| putative tex protein [Burkholderia pseudomallei 1106a]
 gi|134277877|ref|ZP_01764592.1| putative tex protein [Burkholderia pseudomallei 305]
 gi|167002226|ref|ZP_02268016.1| putative tex protein [Burkholderia mallei PRL-20]
 gi|167845422|ref|ZP_02470930.1| putative tex protein [Burkholderia pseudomallei B7210]
 gi|217421596|ref|ZP_03453100.1| putative tex protein [Burkholderia pseudomallei 576]
 gi|242316461|ref|ZP_04815477.1| putative tex protein [Burkholderia pseudomallei 1106b]
 gi|254177979|ref|ZP_04884634.1| putative tex protein [Burkholderia mallei ATCC 10399]
 gi|254197363|ref|ZP_04903785.1| putative tex protein [Burkholderia pseudomallei S13]
 gi|254199935|ref|ZP_04906301.1| putative tex protein [Burkholderia mallei FMH]
 gi|254206268|ref|ZP_04912620.1| putative tex protein [Burkholderia mallei JHU]
 gi|254297444|ref|ZP_04964897.1| putative tex protein [Burkholderia pseudomallei 406e]
 gi|254358317|ref|ZP_04974590.1| putative tex protein [Burkholderia mallei 2002721280]
 gi|52426939|gb|AAU47532.1| transcription accessory protein, TEX [Burkholderia mallei ATCC
           23344]
 gi|121228531|gb|ABM51049.1| putative tex protein [Burkholderia mallei SAVP1]
 gi|124292998|gb|ABN02267.1| putative tex protein [Burkholderia mallei NCTC 10229]
 gi|126218434|gb|ABN81940.1| putative tex protein [Burkholderia pseudomallei 668]
 gi|126225677|gb|ABN89217.1| putative tex protein [Burkholderia pseudomallei 1106a]
 gi|126242095|gb|ABO05188.1| putative tex protein [Burkholderia mallei NCTC 10247]
 gi|134251527|gb|EBA51606.1| putative tex protein [Burkholderia pseudomallei 305]
 gi|147749531|gb|EDK56605.1| putative tex protein [Burkholderia mallei FMH]
 gi|147753711|gb|EDK60776.1| putative tex protein [Burkholderia mallei JHU]
 gi|148027444|gb|EDK85465.1| putative tex protein [Burkholderia mallei 2002721280]
 gi|157806810|gb|EDO83980.1| putative tex protein [Burkholderia pseudomallei 406e]
 gi|160699018|gb|EDP88988.1| putative tex protein [Burkholderia mallei ATCC 10399]
 gi|169654104|gb|EDS86797.1| putative tex protein [Burkholderia pseudomallei S13]
 gi|217395338|gb|EEC35356.1| putative tex protein [Burkholderia pseudomallei 576]
 gi|238522248|gb|EEP85694.1| putative tex protein [Burkholderia mallei GB8 horse 4]
 gi|242139700|gb|EES26102.1| putative tex protein [Burkholderia pseudomallei 1106b]
 gi|243062044|gb|EES44230.1| putative tex protein [Burkholderia mallei PRL-20]
          Length = 774

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 10/180 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIR-NVIGM-----GGKVI 574
            +        L          R  +     P VE M     +   +V+G      G    
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNRDALAGLSPA 608

Query: 575 RGIVEQTG--AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
             + E+ G     +I  +              A                + +G V  V  
Sbjct: 609 EFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAA 668

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV     +DGLVH+S +ST+ +    ++VK G       L     R +I L+M++ D
Sbjct: 669 FGAFVDIGVHQDGLVHVSAMSTKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRLDD 728


>gi|254248084|ref|ZP_04941405.1| RNA binding S1 [Burkholderia cenocepacia PC184]
 gi|124872860|gb|EAY64576.1| RNA binding S1 [Burkholderia cenocepacia PC184]
          Length = 815

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 23/192 (11%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIM--AIPPDQIRNVIGMGGKVIRGIV 578
            +        L          R  +     P VE M   I   +I +V+G      R  +
Sbjct: 590 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKINK-RIDDVLGN-----REAL 643

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQ 626
                   +D+   +      LAE+E      R   ++ T    V K+         +G 
Sbjct: 644 SGLSPSEFVDERFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLVPGMTLEGV 703

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKL 685
           V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G  V VK++D D  R +I L
Sbjct: 704 VTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVIDVDVKRQRIAL 763

Query: 686 SMKVVDQNTGKP 697
           +M+ +D +   P
Sbjct: 764 TMR-LDDDAAAP 774


>gi|294816048|ref|ZP_06774691.1| Transcription accessory protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294328647|gb|EFG10290.1| Transcription accessory protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 801

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK G       L     
Sbjct: 670 MVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGDVVKVKVLDVDVP 729

Query: 680 RGKIKLSMKVVDQ 692
           R +I L++++ D+
Sbjct: 730 RKRISLTLRLDDE 742


>gi|326444390|ref|ZP_08219124.1| transcription accessory protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 786

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    DVVK G       L     
Sbjct: 655 MVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGDVVKVKVLDVDVP 714

Query: 680 RGKIKLSMKVVDQ 692
           R +I L++++ D+
Sbjct: 715 RKRISLTLRLDDE 727


>gi|125553118|gb|EAY98827.1| hypothetical protein OsI_20772 [Oryza sativa Indica Group]
          Length = 536

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 546 LGEFTPRVEIMAIPPD--QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
           L  F P+ E+M  P +   ++N +G    V    +++   ++ I +              
Sbjct: 329 LRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEK------------- 375

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD 662
                   ++T + E   + +G V K+  +GA +      R GL+H+S ++  ++    D
Sbjct: 376 -----EAWAMTYLREG-TLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGD 429

Query: 663 VVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V+K G+ V   ++     G+I LS K ++   G
Sbjct: 430 VLKVGEEVKAIVIKSTAPGRIALSTKDLESEPG 462


>gi|332559239|ref|ZP_08413561.1| RNA binding protein [Rhodobacter sphaeroides WS8N]
 gi|332276951|gb|EGJ22266.1| RNA binding protein [Rhodobacter sphaeroides WS8N]
          Length = 773

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ 
Sbjct: 651 KPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEV 710

Query: 678 DD-RGKIKLSMK 688
           D  R +I L+M+
Sbjct: 711 DVARKRIGLTMR 722


>gi|221640233|ref|YP_002526495.1| RNA binding S1 domain-containing protein [Rhodobacter sphaeroides
           KD131]
 gi|221161014|gb|ACM01994.1| RNA binding S1 domain protein [Rhodobacter sphaeroides KD131]
          Length = 773

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ 
Sbjct: 651 KPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEV 710

Query: 678 DD-RGKIKLSMK 688
           D  R +I L+M+
Sbjct: 711 DVARKRIGLTMR 722


>gi|77464348|ref|YP_353852.1| RNA binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388766|gb|ABA79951.1| RNA binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 773

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ 
Sbjct: 651 KPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEV 710

Query: 678 DD-RGKIKLSMK 688
           D  R +I L+M+
Sbjct: 711 DVARKRIGLTMR 722


>gi|50554347|ref|XP_504582.1| YALI0E30217p [Yarrowia lipolytica]
 gi|49650451|emb|CAG80186.1| YALI0E30217p [Yarrowia lipolytica]
          Length = 1567

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            V + Y G V +  D+G FV+   A  GL H S+++   V   S++   GD V V +L   
Sbjct: 1102 VGQKYDGSVQRTTDYGVFVNIGDAT-GLCHRSEIADTPVGDCSELFNSGDKVRVIVLKI- 1159

Query: 679  DRGKIKLSMKV 689
            +  K+ L MK 
Sbjct: 1160 EGSKVSLGMKA 1170



 Score = 45.3 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 586  NIDDDGTVKIASSSLAEIEAA---REMIRSITDVP----EVNKIYKGQVVKVMDFGAFVH 638
            N+ D G    A    A+   A   R+    +  +P    +     KG V  +   G FV 
Sbjct: 976  NVYDIGETVPAVICSAKEPYAICIRKNPEGVDPLPSLPLKRGDKVKGVVTGIAA-GIFVA 1034

Query: 639  FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
                 D  V I+ LS   +       K G  V  +++ F D+G   +S+K 
Sbjct: 1035 IGHGIDARVKITNLSDSFLMDWKKYFKIGQIVTGRIMGFSDKGLPDMSLKQ 1085



 Score = 44.5 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 75/238 (31%), Gaps = 16/238 (6%)

Query: 452 GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG--ITAMQMDMKI 509
           GV ++  V       + +     I      DE      D++V  T     I     D   
Sbjct: 349 GVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDSTADYEVGQTLDARIIAFAPQD--- 405

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
                 + V++ +Q+     +I         +    +    P+  I+      I  V+  
Sbjct: 406 -----EMYVLSCEQSVMDAKYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFITAVVPA 460

Query: 570 GGKVIRGIVE-QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI-----TDVPEVNKIY 623
              V   +   +   K+     G +    SS   +   + +         +   E+  I 
Sbjct: 461 AHLVDAKMANPELKFKIGSKIKGRLLGVDSSGCRMTIKKSLYNLPKDDFISYASEIGDIG 520

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            G VV V   G  V F       +   ++S   +A  +   + G TV +++LD +   
Sbjct: 521 SGTVVNVKPGGCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEK 578



 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++   +V  V+  G FV       G +HIS+L+ E+   T+D  + G T+  +++ F  +
Sbjct: 346 QVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDSTADY-EVGQTLDARIIAFAPQ 404


>gi|260782066|ref|XP_002586113.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
 gi|229271204|gb|EEN42124.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
          Length = 153

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 330 GLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVS 389
           G++ +  GS+    G T+ I  V  G RE  +  +    T +        F   A     
Sbjct: 15  GVVSQATGSAYIEMGQTKVIAAV-YGPREIARREEF---TMKGRLCCELKFATFAC-RRR 69

Query: 390 RMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
           R      +E     +  +A+ P +         + +   + + DGS   A 
Sbjct: 70  RQHIQDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGSGHCAP 120



 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESR-- 83
           Q+ G+     G+T V+A V   R +   ++F       + R     K      RR  +  
Sbjct: 19  QATGSAYIEMGQTKVIAAVYGPREIARREEF-----TMKGRLCCELKFATFACRRRRQHI 73

Query: 84  PTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDL 122
               E   + ++ +++ P     +  K++  V I V+Q D 
Sbjct: 74  QDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDG 114


>gi|126463190|ref|YP_001044304.1| RNA-binding S1 domain-containing protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104854|gb|ABN77532.1| RNA binding S1 domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 773

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ 
Sbjct: 651 KPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEV 710

Query: 678 DD-RGKIKLSMK 688
           D  R +I L+M+
Sbjct: 711 DVARKRIGLTMR 722


>gi|23008900|ref|ZP_00050151.1| COG0539: Ribosomal protein S1 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 235

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-AKTSDVVK 665
           +    +  +   V    +G+V    +FG F+   G  DG+VH+S L   R   +  +  K
Sbjct: 26  QNPWDAFAEKHPVGSEVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFK 85

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           +GD V  ++LD D ++ +I L +K +  + 
Sbjct: 86  KGDMVRAQVLDVDVEKERISLGVKQLGGDP 115


>gi|255581558|ref|XP_002531584.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528780|gb|EEF30787.1| programmed cell death protein, putative [Ricinus communis]
          Length = 1330

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 625 GQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           G++ +V  +G F+        GL H+S+LS + V       + G+ V  ++L  D +R +
Sbjct: 868 GRIKRVEPYGLFIAIDHTNLVGLCHVSELSDDHVDSVETKYRAGEKVTARILKVDVERRR 927

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L +K +D      I+
Sbjct: 928 ISLGIKNLDNGNDTDIL 944



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR----SITDVPEVNKIYK 624
           + G V+    E+T  ++       V     +   +            +     +   I  
Sbjct: 614 VSGYVLSYNKEKTLLRLVQRPLCAVSCIHVNGEALNKNDAQNEVRRDNAAAYIQEGDIVG 673

Query: 625 GQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G++ K++    G  V       G VH ++L    V    D  +EG  V  K+L+     K
Sbjct: 674 GKISKILSGVGGVLVQIGPHVHGKVHYTELQESWVPNPLDGYREGQFVKCKVLEISRSDK 733

Query: 683 ----IKLSMK 688
               I LS++
Sbjct: 734 GTTHIDLSLR 743



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           + S + +E+    +      D  + N + +G V  V   G F+      D  + +S LS 
Sbjct: 749 MLSQNSSELSKNADQRVEKIDDLQPNTVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSD 808

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           E V    +    G  V  ++L  +    ++++++K   ++TGK
Sbjct: 809 EFVVSPEEEFPIGKLVTGRVLSVEPLSKRVEVTLKKNAKSTGK 851



 Score = 41.4 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D     +  S+   +  +   + S         I  G +  ++D G FV F G   G   
Sbjct: 128 DIENNNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRFLGRLTGFSP 187

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKV 689
            S+    + A+ S+    G +V   ++D   +  +I +S+K 
Sbjct: 188 KSKAMDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSLKQ 229


>gi|322704015|gb|EFY95615.1| rRNA biogenesis protein RRP5, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1795

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 593  VKIASSSLAEIEAAREMIRSITDVPEVNKI-----YKGQVVKVMDFGAF--VHFCGARDG 645
            V  A   +     A  +    T +   N I       G+V KV +FGAF  V       G
Sbjct: 1260 VDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNVSG 1319

Query: 646  LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK--VVDQNT 694
            L H SQ++ E V   + + KEGD V   +L+ D  + +I   ++  + D++T
Sbjct: 1320 LCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLRPSLFDEDT 1371



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
             + +G V  V D G FV   G    LV I+ LS   +    D+ +    V  ++L  D  
Sbjct: 1204 DVVRGFVKNVSDKGLFVALGGHVTALVKIANLSDRFLKDWKDLFQVDQLVKGRVLSVDSA 1263

Query: 681  -GKIKLSMK--VVDQN 693
              ++++S+K   VD++
Sbjct: 1264 LKQVEMSLKASAVDED 1279



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
             G ++K+   GA + F G   G + +S++S   +   ++  + G  V V +L  D   +
Sbjct: 639 VPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQR 698



 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 613  ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                 + N +  G++ KV +    V       G VH+  ++ +     +   K+   + V
Sbjct: 1102 DWTSLKQNMVLPGKITKVNERQLMVKLSDIVSGPVHLPDMADDYDDINTLNYKKNQIIRV 1161

Query: 673  KLLDFD-DRGKIKLSMK 688
             +++ D    +++LSM+
Sbjct: 1162 AIVEVDAGNKRLRLSMR 1178



 Score = 38.7 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQ 692
           G  ++      G V    LS  ++       ++G  V  ++L  +   K I+ ++K    
Sbjct: 561 GLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLSTNPFTKEIRFTLKKTLV 620

Query: 693 NTGKPIV 699
           N+  P++
Sbjct: 621 NSDAPVI 627


>gi|239825786|ref|YP_002948410.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
 gi|239806079|gb|ACS23144.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
          Length = 728

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I D              +          +  +     +G V  V+DFGAFV     +DG
Sbjct: 614 DIIDALIRPERDPRDELPKPLLRKDILKMEDLKRGMELEGTVRNVVDFGAFVDIGVKQDG 673

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           LVHIS+LS + V    DVV  GD V V + + D D+G+I LSM
Sbjct: 674 LVHISKLSKQYVRHPLDVVSVGDVVKVWVDNVDLDKGRISLSM 716


>gi|302823614|ref|XP_002993458.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
 gi|300138732|gb|EFJ05489.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
          Length = 743

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV------ 647
            ++      + A      S        +I  G++  +  FG F+    +   LV      
Sbjct: 555 PLSGHIEMSLAATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLAESNVFLVCAPGCL 614

Query: 648 -HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            H S++S + +   S + K G  V VK+L  D +  +I L MK 
Sbjct: 615 CHFSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKA 658


>gi|159184406|ref|NP_353671.2| hypothetical protein Atu0648 [Agrobacterium tumefaciens str. C58]
 gi|159139719|gb|AAK86456.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 774

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 12/98 (12%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             K  ID+   +      +AE+E      R   ++ T    V++I         +G V  
Sbjct: 604 DPKRFIDEQFGLPTVKDIIAELEKPGRDPRPSFKTATFADGVDEITDLKPGMLLEGTVTN 663

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           V  FGAFV     +DGLVH+SQL+   V    +VVK G
Sbjct: 664 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAG 701


>gi|319781706|ref|YP_004141182.1| Tex-like protein protein-like protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167594|gb|ADV11132.1| Tex-like protein protein-like protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 775

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 13/129 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVK 629
             +V +D+   +      LAE+E      R                  +   + +G V  
Sbjct: 603 DPRVFVDERFGLPTVRDILAELEKPGRDPRPGFKTATFADGIDDIKDLKPGMLLEGTVTN 662

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   +    +VVK GD V V+++D D  R +I LSM+
Sbjct: 663 VAAFGAFVDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVRVVDVDIKRKRIALSMR 722

Query: 689 VVDQNTGKP 697
                 G P
Sbjct: 723 KDSGEGGAP 731


>gi|212723374|ref|NP_001131751.1| hypothetical protein LOC100193118 [Zea mays]
 gi|194692428|gb|ACF80298.1| unknown [Zea mays]
          Length = 146

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +T + E   + +G V K+  +GA V   G  R GL+HIS +S   V   SD++K  D V 
Sbjct: 1   MTYLKEG-TLLQGTVCKIFPYGARVRIAGTNRSGLLHISNISRGNVLSVSDILKIDDEVK 59

Query: 672 VKLLDFDDRGKIKLSMKVVDQNTG 695
           V ++  +   KI +S+  ++   G
Sbjct: 60  VIVIKSNVPDKIAVSIADLESAPG 83


>gi|78066568|ref|YP_369337.1| RNA binding S1 [Burkholderia sp. 383]
 gi|77967313|gb|ABB08693.1| RNA binding S1 [Burkholderia sp. 383]
          Length = 774

 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 19/190 (10%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQ 580
            +        L          R  +     P VE M     +  + +    + + G+   
Sbjct: 549 DKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERMLAKISKRIDDVLGNREALSGL--- 605

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVV 628
                 +D+   +      L+E+E      R   ++ T    V K+         +G V 
Sbjct: 606 -SPTEFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFREGVEKVSDLVPGMTLEGVVT 664

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
            V  FGAFV     +DGLVH+S +ST+ +    +VVK G  V VK++D D  R +I L+M
Sbjct: 665 NVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVIDVDVKRQRIALTM 724

Query: 688 KVVDQNTGKP 697
           + +D +   P
Sbjct: 725 R-LDDDAAAP 733


>gi|258596889|ref|XP_001349602.2| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
 gi|254688464|gb|AAC71872.3| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
          Length = 275

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 92/257 (35%), Gaps = 22/257 (8%)

Query: 301 KVVRTVMLDKK-VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED 359
           K+    + +    R++ R +  +RD+  ++G  +    S  +  G+T+ +  V  G   D
Sbjct: 19  KIYEENLNNGSFKRINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTV-YGPNPD 77

Query: 360 EQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQ 418
                    ++   +     FL   +  ++ +GA  R R+     L    I  ++     
Sbjct: 78  ---------SKYATYSKGKVFLDVKSLNINTIGASDRQRDDDIKSLLIECISNIILLEKY 128

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK--PVAGIAMGLVKDGDDFIIL 476
              +++I   I + DG    AT+   SLAL+ A + +        I   +         L
Sbjct: 129 PQCSIKIKCLIIQDDGGCLSATLTCISLALIKAQIQMKDIIISININSIICPVTKKMYHL 188

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI-GGI-------SENIMVMALQQAKRGR 528
            D+ G E+      +++     GI      +    G        +   +    + A +  
Sbjct: 189 VDLDGMEEKYYQSKYEMNSITLGICLNLKTVCFYHGTGSFFNSKTLAEITSYGECACKSL 248

Query: 529 LHILNEMSKVLSESRLQ 545
              + ++ K  ++ R+ 
Sbjct: 249 GSEIKKVLKQYTKKRID 265


>gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8G2]
          Length = 272

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 92/275 (33%), Gaps = 31/275 (11%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S+ + ++   +  ++  +  R+D R  +  R +    G++   +GS+    GDT+ +  +
Sbjct: 5   SIIDKLKRSKILDLL-QEGKRIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGI 63

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
            +    D+ + D      +  F+     LP A       G P    I   R+  R I   
Sbjct: 64  KIQP--DKPFPDM---GDKGIFICTAEILPLAHPSAE-TGPPQPNVIEIARVVDRGIRES 117

Query: 413 LPQT------AQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVP---ISK---- 457
                      +    + + ++  +T+ DG+   A    +  A++ + +P   +      
Sbjct: 118 GMIDLSQLVLQKDKSVIGVFADNVVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPV 177

Query: 458 ---------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
                    P+  I + +        I+ D + DE         +     G         
Sbjct: 178 LIEDQASDTPITTIPISVTMGLMGEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGG 237

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
             G S   +V   + +      I + + +    S+
Sbjct: 238 SDGFSLEQLVKCSELSIAIGKKIRDIIKQATEGSK 272



 Score = 37.6 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 95/246 (38%), Gaps = 46/246 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           RPL ++TG I   ++G+  A  G+T V    V    ++  + F    +  +       +I
Sbjct: 34  RPLVIDTGVI-PHANGSARARLGDTEV----VSGIKIQPDKPF--PDMGDKGIFICTAEI 86

Query: 74  -PGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKNETQVIIN-------VMQ----H 120
            P  +   E+ P + N I I+R++DR IR        + +Q+++        V       
Sbjct: 87  LPLAHPSAETGPPQPNVIEIARVVDRGIR---ESGMIDLSQLVLQKDKSVIGVFADNVVT 143

Query: 121 DLESSPHVVSMVAASAALMLSGLPF-----EGPV---------------VGAQVDYINGQ 160
           D + +       AA AA++ S +P      + PV               +   +  +   
Sbjct: 144 DHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTMGLMGEF 203

Query: 161 YVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
            +++P LDE +     + +  +   + V + +  ++  S + ++          K + + 
Sbjct: 204 IIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDGFSLEQLVKCSELSIAIGKKIRDI 263

Query: 218 ISKLAK 223
           I +  +
Sbjct: 264 IKQATE 269


>gi|15217547|ref|NP_177317.1| S1 RNA-binding domain-containing protein [Arabidopsis thaliana]
          Length = 487

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + +G VVK++ +GA V    + R GL+HIS ++  R+   SDV++  ++V V ++    
Sbjct: 350 TLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLF 409

Query: 680 RGKIKLSMKVVDQNTG 695
             KI LS+  ++   G
Sbjct: 410 PDKISLSIADLESEPG 425


>gi|171320451|ref|ZP_02909484.1| RNA binding S1 domain protein [Burkholderia ambifaria MEX-5]
 gi|171094311|gb|EDT39385.1| RNA binding S1 domain protein [Burkholderia ambifaria MEX-5]
          Length = 774

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +ST+ +    +VVK G       L     
Sbjct: 657 MLLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVK 716

Query: 680 RGKIKLSMKVVDQNTG 695
           R +I L+M++ D+   
Sbjct: 717 RQRIALTMRLDDEAAA 732


>gi|225441563|ref|XP_002276633.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1821

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  I  G + +V  +G F+        GL HIS+LS + ++      K G+ V  K+L  
Sbjct: 1365 VGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIETKYKAGERVAAKILKV 1424

Query: 678  D-DRGKIKLSMK 688
            D +R +I L MK
Sbjct: 1425 DEERHRISLGMK 1436



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +    + +D +G   I S+  + I +A+++   +T +   N +  G +  +++ G FV F
Sbjct: 635 EFDQLLVLDVEGNNFILSAKYSLINSAQQLPLDLTQI-HPNSVVHGYICNIIETGCFVRF 693

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            G   G    +++  ++ A  S+    G +V   +LD + + G+I LS+K 
Sbjct: 694 LGRLTGFSPRNKVMDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQ 744



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 58/210 (27%), Gaps = 11/210 (5%)

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           + ++  E     +         G+    +       S                 I  +  
Sbjct: 376 TYVTYKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVKPGMVVKAKVIAVDSF 435

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIA 596
             + +    +    P   +      + R    +G ++I  ++     ++ +         
Sbjct: 436 GAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCKSKRITV--------- 486

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
            +    +  ++  I S         I  G + K+   G F+ F     G    S+L  E 
Sbjct: 487 -THKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSELGLEP 545

Query: 657 VAKTSDVVKEGDTVWVKLLD-FDDRGKIKL 685
              TS +   G  V  ++        +I L
Sbjct: 546 GCNTSLMYHVGQVVKCRVKGSVPASRRINL 575



 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 634  GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK----IKLSM 687
            G  V       G VH ++L    V+       EG  V  K+L+     K    + LS+
Sbjct: 1196 GLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLEIGHSEKGTVHVDLSL 1253



 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E         +   + K +V+ V  FGA V F      L  +  +S   + K     K
Sbjct: 408 AFEGSVFTHSDVKPGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFK 467

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  +  ++L      +I ++ K
Sbjct: 468 VGAELIFRVLGC-KSKRITVTHK 489



 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 620  NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + + +G V  V   G F+      D  + ++ LS   V K       G  V  ++L  + 
Sbjct: 1276 DMLVQGYVKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEP 1335

Query: 680  RGKIKLSMKV 689
                 LS +V
Sbjct: 1336 -----LSRRV 1340


>gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG6J21]
          Length = 272

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 96/281 (34%), Gaps = 43/281 (15%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           S+ + ++   +  ++  +  R+D R  +  R +    G++   +GS+    GDT+ +  +
Sbjct: 5   SIIDKLKRSKILDLL-QEGKRIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGI 63

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA------------TGEVSRMGAPSRREIG 400
            +    D+ + D      +  F+     LP A              E++R+     RE G
Sbjct: 64  KVQP--DKPFPDM---GDKGIFICTAEILPLAHPSAETGPPQPNVIEIARVVDRGIRESG 118

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSE--ITESDGSSSMATVCGSSLALMDAGVP---I 455
              L++  +             + + ++  +T+ DG+   A    +  A++ + +P   +
Sbjct: 119 MIDLSQMVLQK-------DKSVIGVFADNVVTDHDGNLFDACSYAAVAAIITSKIPKWEM 171

Query: 456 SK-------------PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
                          P+  I + +        I+ D + DE         +     G   
Sbjct: 172 KDDKPVLIEDQASDTPITTIPISVTMGLIGEFIIVDPNLDEWECLDARITITTNSDGNIV 231

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
                   G S   +V   + +      I + + +    S+
Sbjct: 232 ALQKGGSDGFSLEQLVKCAELSIAIGKKIRDIIKQATEGSK 272



 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 48/247 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQ-DFFPLTVNYQERTYAVG 71
           RPL ++TG I   ++G+  A  G+T V++ + V          D                
Sbjct: 34  RPLVIDTGVI-PHANGSARARLGDTEVVSGIKVQPDKPFPDMGDKGIFICT-------AE 85

Query: 72  KIPGGYLRRESRPTE-NEILISRMIDRSIRPLFSKCYKNETQVIIN-------VMQ---- 119
            +P  +   E+ P + N I I+R++DR IR        + +Q+++        V      
Sbjct: 86  ILPLAHPSAETGPPQPNVIEIARVVDRGIR---ESGMIDLSQMVLQKDKSVIGVFADNVV 142

Query: 120 HDLESSPHVVSMVAASAALMLSGLPF-----EGPV---------------VGAQVDYING 159
            D + +       AA AA++ S +P      + PV               +   +  I  
Sbjct: 143 TDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTMGLIGE 202

Query: 160 QYVLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
             +++P LDE +     + +  +   + V + +  ++  S + ++          K + +
Sbjct: 203 FIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDGFSLEQLVKCAELSIAIGKKIRD 262

Query: 217 AISKLAK 223
            I +  +
Sbjct: 263 IIKQATE 269


>gi|7239499|gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from
           this gene [Arabidopsis thaliana]
 gi|332197102|gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
          Length = 500

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + +G VVK++ +GA V    + R GL+HIS ++  R+   SDV++  ++V V ++    
Sbjct: 363 TLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLF 422

Query: 680 RGKIKLSMKVVDQNTG 695
             KI LS+  ++   G
Sbjct: 423 PDKISLSIADLESEPG 438


>gi|215400730|ref|YP_002327491.1| ribosomal protein S1 [Vaucheria litorea]
 gi|194441180|gb|ACF70908.1| ribosomal protein S1 [Vaucheria litorea]
          Length = 261

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 20/146 (13%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
            +L  F P      +P    R +I      I+ +  Q   + +I     + I  S     
Sbjct: 135 DKLDIFIP---NFHLPKYYRRKLIHNKLINIKILQIQ-KKQYSIIGSSRLAIFKSHCLSF 190

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
                             + K  ++ +  FG F++  G R  L+HIS++  +++   +  
Sbjct: 191 YKGL--------------VQKCCIIAIKPFGIFLNIYGLR-CLLHISEIPNKKIKFINKY 235

Query: 664 VKEGDTVWVKLLDFDDR-GKIKLSMK 688
            K+GD + VK+L  ++  GKI +SMK
Sbjct: 236 YKKGDHIIVKVLYINNNTGKIAVSMK 261


>gi|291404763|ref|XP_002718641.1| PREDICTED: programmed cell death 11 isoform 2 [Oryctolagus
           cuniculus]
          Length = 1860

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           + + +  +    L +   R+  + +PP  + +++    +    I E+   +V + D    
Sbjct: 459 KGTVLTIKPYGILLKVGERIRGL-VPPSHLADILMKNPEKKYHIGEELKCRVLLCDPEAK 517

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K+  +    +  ++    +     +      G +++V D+G  V F     GLV   +LS
Sbjct: 518 KLIMTLKKTLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELS 577

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            + +     V   G  V V +L+ +  + ++ LS K++  + G+P
Sbjct: 578 AQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFKLL--SDGEP 620



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + +S + V   SD   EG TV  K+ 
Sbjct: 727 EIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSPSDHFVEGQTVVAKVT 786

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 787 NVDEEKQRMLLSLRLSD 803



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +   + KG V+ +  +G  +       GLV  S L+   +         
Sbjct: 442 IEAQYFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHI 501

Query: 667 GDTVWVKLLDFDDRGK 682
           G+ +  ++L  D   K
Sbjct: 502 GEELKCRVLLCDPEAK 517


>gi|295402568|ref|ZP_06812517.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975416|gb|EFG51045.1| Tex-like protein-like protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 728

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 15/124 (12%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYK 624
           +G+G   +R I+           D  V+       E+     R+ I  + D+ +  ++ +
Sbjct: 605 LGIGELTLRDII-----------DALVRPERDPRDELPKPLLRKDILKMEDLKKGMEL-E 652

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD V V + + D D+G+I
Sbjct: 653 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVDNVDVDKGRI 712

Query: 684 KLSM 687
            LSM
Sbjct: 713 SLSM 716


>gi|224001752|ref|XP_002290548.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973970|gb|EED92300.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 627

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGLV 647
           D      +  +  + +  R + R       V   Y G V  +    GAF+      D   
Sbjct: 387 DKSKSDPSKKTPKKDDPRRCIGRKPVTDYTVGTKYSGTVKYIKPHLGAFIDIGCHSDAFC 446

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           HIS +S E  +   DV+K  DTV  ++++ + ++ +I +S++  D
Sbjct: 447 HISCISDEYASSVGDVLKVDDTVDARIIEINREKKRITVSLRSED 491


>gi|291404761|ref|XP_002718640.1| PREDICTED: programmed cell death 11 isoform 1 [Oryctolagus
           cuniculus]
          Length = 1875

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV 593
           + + +  +    L +   R+  + +PP  + +++    +    I E+   +V + D    
Sbjct: 459 KGTVLTIKPYGILLKVGERIRGL-VPPSHLADILMKNPEKKYHIGEELKCRVLLCDPEAK 517

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K+  +    +  ++    +     +      G +++V D+G  V F     GLV   +LS
Sbjct: 518 KLIMTLKKTLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELS 577

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
            + +     V   G  V V +L+ +  + ++ LS K++  + G+P
Sbjct: 578 AQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFKLL--SDGEP 620



 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + +S + V   SD   EG TV  K+ 
Sbjct: 727 EIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSPSDHFVEGQTVVAKVT 786

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 787 NVDEEKQRMLLSLRLSD 803



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +   + KG V+ +  +G  +       GLV  S L+   +         
Sbjct: 442 IEAQYFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHI 501

Query: 667 GDTVWVKLLDFDDRGK 682
           G+ +  ++L  D   K
Sbjct: 502 GEELKCRVLLCDPEAK 517


>gi|255537401|ref|XP_002509767.1| conserved hypothetical protein [Ricinus communis]
 gi|223549666|gb|EEF51154.1| conserved hypothetical protein [Ricinus communis]
          Length = 748

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 559 PPDQIRNVIGM-GGKVIRGIVEQTGAKVNID----DDGTVKIASS-SLAEIEAAREMIRS 612
           P  ++ +++ +   + ++ +    G K+ ++    D    K+  S    E E + +  R+
Sbjct: 497 PNMKLEDLLRIYDQEKLKFLSSFVGQKIKVNVVVADKILRKLTFSLRPKEKEESVQRKRN 556

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           +    ++  + K  + K+  FG FV   G    L+H +++S +     +   K G  V  
Sbjct: 557 LMAKLQIGDVVKCCIKKITYFGIFVEVEG-VAALIHQTEVSWDATLDPASYFKVGQIVEA 615

Query: 673 KLLDFD-DRGKIKLSMKVVDQNT 694
           K+   D    +I LS+K +  + 
Sbjct: 616 KVHQMDFTLERIFLSLKEITPDP 638


>gi|312112520|ref|YP_003990836.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
 gi|311217621|gb|ADP76225.1| Tex-like protein [Geobacillus sp. Y4.1MC1]
          Length = 728

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 15/124 (12%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYK 624
           +G+G   +R I+           D  V+       E+     R+ I  + D+ +  ++ +
Sbjct: 605 LGIGELTLRDII-----------DALVRPERDPRDELPKPLLRKDILKMEDLKKGMEL-E 652

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V+DFGAFV     +DGLVHIS+LS + V    DVV  GD V V + + D D+G+I
Sbjct: 653 GTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVDNVDVDKGRI 712

Query: 684 KLSM 687
            LSM
Sbjct: 713 SLSM 716


>gi|224052757|ref|XP_002193665.1| PREDICTED: programmed cell death 11 [Taeniopygia guttata]
          Length = 1885

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E +       +   +  G V  VM FG FV F     GL     +S + V  T D    G
Sbjct: 773 EKVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVG 832

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
            TV  K++  D ++ ++ L++KV + ++G
Sbjct: 833 QTVIAKVMSTDEEKQRVLLNLKVSECSSG 861



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 618  EVNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E + I  G V KV    G  +   G + G V I  L+           K G  V   +L 
Sbjct: 1274 EQDTISVGMVTKVTPHVGLTIALPGGKTGKVSIFHLNDTYTDNPLGNFKVGKIVRCYILS 1333

Query: 677  FDDRGKIKLSMKV 689
              + GKI+LS++ 
Sbjct: 1334 I-ENGKIQLSLRQ 1345



 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV----------KIASSSLAEIEA 605
           M +        +     +   I++Q   K NI D+             K+  +    +  
Sbjct: 521 MQVKVADGIRGLVPSLHLSDVILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQ 580

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           ++  + S  +  +   I  G VV   +FG  V F     GLV  ++L +E ++    V  
Sbjct: 581 SKLPVLSNYEDAKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFY 640

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           EG  + V +L  +  + ++ LS ++  +   + 
Sbjct: 641 EGQVLKVMVLKCEPQQERLLLSFRLSSKPGPED 673



 Score = 44.5 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
               S   +I  AR +            + +G+V+ +   G  V       GLV    LS
Sbjct: 483 MCIVSLKHQIIEARFLQYQDIHT---GDVVQGKVLSLKPIGMQVKVADGIRGLVPSLHLS 539

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMK 688
              + +       GD V  ++L+ +  G K+ L++K
Sbjct: 540 DVILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLK 575



 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 605  AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS--- 661
               ++  +     +  ++ +G V  +   G F     +  G +    +S   V K S   
Sbjct: 1355 KVEDIEITSIKDVKKGQLVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYK 1414

Query: 662  DVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKPIV 699
              + EG  +  K+L  + + K I+LS+  + ++TG P V
Sbjct: 1415 KYLPEGKLLTAKVLGVNRKEKHIELSL--LPEDTGMPSV 1451


>gi|298490918|ref|YP_003721095.1| Tex-like protein protein-like protein ['Nostoc azollae' 0708]
 gi|298232836|gb|ADI63972.1| Tex-like protein protein-like protein ['Nostoc azollae' 0708]
          Length = 719

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
            +G +  V +FGAFV     +DGLVHISQL+   V     +VK G  V V++L+ +++  
Sbjct: 649 LEGIITNVANFGAFVDIGVHQDGLVHISQLADRFVDDPQKIVKVGQVVKVQVLEVNEKLN 708

Query: 682 KIKLSMKVVDQ 692
           +I LS+K V Q
Sbjct: 709 RIGLSIKAVKQ 719


>gi|82702712|ref|YP_412278.1| RNA binding S1 [Nitrosospira multiformis ATCC 25196]
 gi|82410777|gb|ABB74886.1| RNA binding S1 [Nitrosospira multiformis ATCC 25196]
          Length = 790

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +            I AA +   +     +   + +G V  V  FGAFV     +DG
Sbjct: 635 DIVKELEKPGRDPRPEFITAAFKEGVNEISDLQPGMLLEGVVTNVAAFGAFVDIGVHQDG 694

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           LVHIS L+ + V     VVK G  V VK+L+ D+ R +I L+M++ D    +
Sbjct: 695 LVHISALADKFVKDPHTVVKVGQVVKVKVLEVDEKRKRIALTMRLADAPAPQ 746


>gi|309267231|ref|XP_003086999.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Mus musculus]
          Length = 89

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 639 FCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           +      L+H SQL   ++   + + ++ G  + VK    D   G+++LS KV+ 
Sbjct: 5   YPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 59


>gi|154485040|ref|ZP_02027488.1| hypothetical protein EUBVEN_02758 [Eubacterium ventriosum ATCC
           27560]
 gi|149733993|gb|EDM50112.1| hypothetical protein EUBVEN_02758 [Eubacterium ventriosum ATCC
           27560]
          Length = 711

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDV 616
              ++   IG     +R ++++             K       E+     +  +    D+
Sbjct: 590 DVKEVAKEIGTDPITLRDMIKELE-----------KPGRDPREEMPKPVLKSDVLDFDDL 638

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            E  ++ KG V  V+DFGAFV     +DGLVHIS++S + +    DVV  GD V V++L 
Sbjct: 639 KEGMEL-KGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHPLDVVSVGDVVDVRVLS 697

Query: 677 FD-DRGKIKLSMK 688
            D +R +I+LSMK
Sbjct: 698 VDKERKRIQLSMK 710


>gi|169614287|ref|XP_001800560.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
 gi|111061496|gb|EAT82616.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
          Length = 1794

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF--VHFCG 641
            K+  + +       +          +        +  +I   +V KV +FG F  V    
Sbjct: 1277 KIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVRKVAEFGVFLVVDNSN 1336

Query: 642  ARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMK 688
               GL H+S+L+ + V   K  D+ KEGD V  K++  +    +I  S+K
Sbjct: 1337 NVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINFSLK 1386



 Score = 46.8 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++ I       +V+++ +G + K+ D G +V      +  V +S LS   +         
Sbjct: 1211 KDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNLSDSYIKDWKSAFHV 1270

Query: 667  GDTVWVKLLDFDDRGK 682
               V  K++   +  +
Sbjct: 1271 DQLVTGKIISNKEDQR 1286



 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G +V V+  GA V F G     + ++++S   +   +    +G  V V+++  + + +
Sbjct: 650 GILVNVLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDR 707


>gi|254172923|ref|ZP_04879597.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
 gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
          Length = 273

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 38/276 (13%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ A ++R  +L+   +  R+DGR  E  RDI  + G +++  GS+    G T+ +V   
Sbjct: 5   EVMAGIMRDRILNLLKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLV--- 61

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA----- 408
            G + D           R     +   +P A+      G P  R I   R+  R      
Sbjct: 62  -GIKVDVGEP-FPDLPDRGVMTTNVELVPLASPTFEP-GPPDERAIELARVIDRGIRESQ 118

Query: 409 ---IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMG 465
              +  ++    +    + I   + + DG+   AT   +  AL+   VP  +       G
Sbjct: 119 AVELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALLTTRVPKVEY--NEETG 176

Query: 466 LVKDGDDFIILS-------------------DISGDEDHLGHMDFKVAGTDSGITAMQMD 506
            +   D++  L                    D + DE+ +      +   ++G  +    
Sbjct: 177 EIVKLDEYEPLPVRRIPLPVTFAKIGSSIIVDPNLDEETVMDSRITITTDETGHISAVQK 236

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            + G      ++ A+  A +    +   + + +  +
Sbjct: 237 GEGGSFKLEEVMYAIDTALKKADELRKILLEAVGSA 272



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 83/245 (33%), Gaps = 45/245 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLAT--VVYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R ++++TG I + ++G+     G T VL    V       D  D   +T N +    A  
Sbjct: 34  RDIEIKTGFIEK-AEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASP 92

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
               G       P E  I ++R+IDR IR           +          + ++V+ HD
Sbjct: 93  TFEPGP------PDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFIDVHVLDHD 146

Query: 122 LESSPHVVSMVAASAALMLSGLP---FEGPVVG------------------AQVDYINGQ 160
             +      + AA AAL+ + +P   +                             I   
Sbjct: 147 G-NLFDATGL-AAMAALLTTRVPKVEYNEETGEIVKLDEYEPLPVRRIPLPVTFAKIGSS 204

Query: 161 YVLNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEA 217
            +++P LDE+      + +    T     + + E      + V+ AI     +   + + 
Sbjct: 205 IIVDPNLDEETVMDSRITITTDETGHISAVQKGEGGSFKLEEVMYAIDTALKKADELRKI 264

Query: 218 ISKLA 222
           + +  
Sbjct: 265 LLEAV 269


>gi|167950381|ref|ZP_02537455.1| 30S ribosomal protein S1 [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 104

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-I 683
              V+++  GA +      +G +  S+LS +RV     ++KEG  +  KL+  D + + I
Sbjct: 1   MWSVRLIAKGAVIDLADGVEGYLRASELSRDRVEDARTLLKEGQEIEAKLIGVDRKNRTI 60

Query: 684 KLSM 687
            LS+
Sbjct: 61  SLSI 64


>gi|220924066|ref|YP_002499368.1| RNA binding S1 domain-containing protein [Methylobacterium nodulans
           ORS 2060]
 gi|219948673|gb|ACL59065.1| RNA binding S1 domain protein [Methylobacterium nodulans ORS 2060]
          Length = 769

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 547 GEFTPRVEIM-AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
            E  P V  + A     I+ VIG        ++     K   DD   +   +  +AE+E 
Sbjct: 570 PEAYPVVRRILAATKSDIKGVIGNTA-----LLRGLNPKSFTDDTFGLPTVTDIIAELEK 624

Query: 606 A----REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
                R   R+ T    V  I         +G V  V  FGAFV     +DGLVHIS LS
Sbjct: 625 PGRDPRPSFRTATFREGVETIADLKPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISALS 684

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
              V    +VVK GD V VK+LD D  R +I L+M++ D
Sbjct: 685 NSFVKDPRNVVKPGDVVKVKVLDVDVPRKRISLTMRLDD 723


>gi|297739784|emb|CBI29966.3| unnamed protein product [Vitis vinifera]
          Length = 1862

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 619  VNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V  I  G + +V  +G F+        GL HIS+LS + ++      K G+ V  K+L  
Sbjct: 1406 VGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIETKYKAGERVAAKILKV 1465

Query: 678  D-DRGKIKLSMK 688
            D +R +I L MK
Sbjct: 1466 DEERHRISLGMK 1477



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 580 QTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
           +    + +D +G   I S+  + I +A+++   +T +   N +  G +  +++ G FV F
Sbjct: 718 EFDQLLVLDVEGNNFILSAKYSLINSAQQLPLDLTQI-HPNSVVHGYICNIIETGCFVRF 776

Query: 640 CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            G   G    +++  ++ A  S+    G +V   +LD + + G+I LS+K 
Sbjct: 777 LGRLTGFSPRNKVMDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQ 827



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           I  G + K+   G F+ F     G    S+L  E    TS +   G  V  ++       
Sbjct: 583 ITHGWITKIEKHGCFIRFYNGVQGFAPSSELGLEPGCNTSLMYHVGQVVKCRVKGSVPAS 642

Query: 681 GKIKLS 686
            +I LS
Sbjct: 643 RRINLS 648



 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 634  GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK----IKLSM 687
            G  V       G VH ++L    V+       EG  V  K+L+     K    + LS+
Sbjct: 1237 GLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLEIGHSEKGTVHVDLSL 1294



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E         +   + K +V+ V  FGA V F      L  +  +S   + K     K
Sbjct: 480 AFEGSVFTHSDVKPGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFK 539

Query: 666 EGDTVWVKLLDFDDRGKIKLSMK 688
            G  +  ++L      +I ++ K
Sbjct: 540 VGAELIFRVLGC-KSKRITVTHK 561



 Score = 37.6 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 620  NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + + +G V  V   G F+      D  + ++ LS   V K       G  V  ++L  + 
Sbjct: 1317 DMLVQGYVKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEP 1376

Query: 680  RGKIKLSMKV 689
                 LS +V
Sbjct: 1377 -----LSRRV 1381


>gi|225849605|ref|YP_002729839.1| ribosomal protein S01 [Persephonella marina EX-H1]
 gi|225646411|gb|ACO04597.1| ribosomal protein S01 [Persephonella marina EX-H1]
          Length = 550

 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E     T   EV    + ++  + DFG  V   GA +G +H S+ S  R     +  ++G
Sbjct: 259 EPDPWKTFDKEVGDQIEVEIKDINDFGLIVK-TGALEGFIHKSETSHLRPENYKNSFRKG 317

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
             V  K+++ D +  ++KLS+K +  + 
Sbjct: 318 QKVKAKIIELDRENRRLKLSIKALHPHP 345



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                     V  + K +V K++D GAFV      +G + +S++S E++   SD +  G 
Sbjct: 430 PWEEFFSKHSVGDVIKAKVKKLIDRGAFVDINEDVEGFIPLSEISKEKIEIPSDKLSLGQ 489

Query: 669 TVWVKLLDFDDRGKIKLSM 687
            +  K++       I LS+
Sbjct: 490 EIEAKIIKIKGHD-IILSI 507



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 2/114 (1%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           +++ D      + S      E  +     I  + E  K  +G+V KV + GA +      
Sbjct: 152 RIDRDRKPPGIVVSRKKVLDEEIKRKRDEIFSLLEEGKQVRGRVEKVQENGAVLSLERIV 211

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            G +  S  S +R    S+ +  GD + + +   D +  KI  S + ++ +  K
Sbjct: 212 FGFLPRSLYSWDRDRSISE-LSVGDEIDLVVKSIDRENQKIIFSKRDLEPDPWK 264



 Score = 44.5 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           L  F  + E   + P+  +N    G KV   I+E         D    ++  S  A    
Sbjct: 293 LEGFIHKSETSHLRPENYKNSFRKGQKVKAKIIEL--------DRENRRLKLSIKALHPH 344

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVV 664
             +             + +G++ ++ +  AFV      +G++H+   +   ++     V+
Sbjct: 345 PVDKFLEENPE---GSVVEGKIKEIRNKIAFVDLGKDVEGVIHLEDATWNPKIKNIGQVL 401

Query: 665 KEGDTV-WVKLLDFDDRGKIKLSMKVVDQNTGKP 697
           K G  +   K+L   ++ K++L +K    N  + 
Sbjct: 402 K-GKRLREFKVLGR-EKDKVRLGIKQFRDNPWEE 433


>gi|257076185|ref|ZP_05570546.1| translation initiation factor IF-2 subunit alpha [Ferroplasma
           acidarmanus fer1]
          Length = 253

 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE   +    + +V ++GA V         G +HI++++T  +    D V+       K+
Sbjct: 6   PEPGDLVVVTIKEVQNYGAIVQLDEYPGVSGFIHIAEVATGWIKHIKDFVRVNQRTVCKV 65

Query: 675 LDFDDRGK-IKLSMKVVDQNTGKP 697
           L+ D   + + LS+K V+++  + 
Sbjct: 66  LNVDSNRRHVDLSLKRVNEHQKRE 89


>gi|116492972|ref|YP_804707.1| RNA-binding protein [Pediococcus pentosaceus ATCC 25745]
 gi|116103122|gb|ABJ68265.1| RNA binding protein (S1 domain) [Pediococcus pentosaceus ATCC
           25745]
          Length = 124

 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + +I    +V +  +G FV     R GL+H+S+     +    +    G+ +   +++ D
Sbjct: 4   LGEIVSTTIVGIKPYGVFVLDRNGRKGLIHVSECDDGYIKNLRNTFSIGEKIKAIVMEDD 63

Query: 679 DRGKIKLSMKVVDQNTG 695
              K  LS++ + +  G
Sbjct: 64  GDKKFSLSIRSLKETKG 80


>gi|172040488|ref|YP_001800202.1| putative transcriptional accessory protein [Corynebacterium
           urealyticum DSM 7109]
 gi|171851792|emb|CAQ04768.1| putative transcriptional accessory protein [Corynebacterium
           urealyticum DSM 7109]
          Length = 787

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD-TV 670
                     + +G V  V  FGAFV     +DGLVH+S ++   V    +VV  G    
Sbjct: 637 EKVSDVRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMADRFVKDPHEVVHSGQVVK 696

Query: 671 WVKLLDFDDRGKIKLSMKVVDQN 693
              +    DR +I LS+++ D+ 
Sbjct: 697 VKVMDVDVDRQRIGLSLRLSDEP 719


>gi|206560233|ref|YP_002230997.1| putative transcription accessory protein [Burkholderia cenocepacia
           J2315]
 gi|198036274|emb|CAR52170.1| putative transcription accessory protein [Burkholderia cenocepacia
           J2315]
          Length = 774

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 14/125 (11%)

Query: 586 NIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDF 633
            +D+   +      LAE+E      R   ++ T    V K+         +G V  V  F
Sbjct: 610 FVDERFGLPTVRDILAELEKPGRDPRPEFKTATFREGVEKVSDLVPGMTLEGVVTNVAAF 669

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           GAFV     +DGLVH+S +ST+ +    +VVK G  V VK+LD D  R +I L+M+ +D 
Sbjct: 670 GAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRIALTMR-LDD 728

Query: 693 NTGKP 697
           +   P
Sbjct: 729 DAAAP 733


>gi|110589430|gb|ABG77224.1| 30S ribosomal protein S1 [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 104

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IK 684
             V+++  GA +      +G +  S+LS +RV     ++KEG  +  KL+  D + + I 
Sbjct: 2   WSVRLIAKGAVIDLADGVEGYLRASELSRDRVEDARTLLKEGQEIEAKLIGVDRKNRTIS 61

Query: 685 LSM 687
           LS+
Sbjct: 62  LSI 64


>gi|326573864|gb|EGE23817.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           O35E]
          Length = 38

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
            ERV   SD +KEG TV V++ D D+RG+IKL+MK V+
Sbjct: 1   WERVENVSDYLKEGQTVKVQVQDIDNRGRIKLTMKGVE 38


>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
          Length = 257

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 93/253 (36%), Gaps = 37/253 (14%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LGTREDEQYVD 364
           ++    R DGR     R+IS +  +++R  GS+    GDT+ +V V   LGT     + D
Sbjct: 17  LVKNGKREDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP----FPD 72

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--------PVLPQT 416
           +     +   + +   +P A+ +    G P+   I   R+  R I          +  + 
Sbjct: 73  T---PDKGVIITNAELVPLASPKFES-GPPNENSIQLARVVDRGIRGSETIDLDKLCIEK 128

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV-------------PISK-PVAGI 462
            +  + + I   + + +G+ + A   G+  +L++  +             P+   PVA  
Sbjct: 129 GEKVWMVFIDIHVLDDNGNLADAAALGAIASLLNLRIPNERYGLTGENTLPMRDTPVAVT 188

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            +       +  IL D S DE +       V     G  +       GG+ E  +   ++
Sbjct: 189 TV-----EIEGNILVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSGGLKEAQIAEMVE 243

Query: 523 QAKRGRLHILNEM 535
                   I  + 
Sbjct: 244 IGIEKAGEIRGKY 256


>gi|33151552|ref|NP_872905.1| transcription accessory protein tex-like protein [Haemophilus
           ducreyi 35000HP]
 gi|33147772|gb|AAP95294.1| transcription accessory protein tex-like protein [Haemophilus
           ducreyi 35000HP]
          Length = 772

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +              A            +V  + +G V  V +FGAFV     +DG
Sbjct: 624 DILKELEKPGRDPRGEFKTAHFMDGVEEIKDLKVGMLLEGTVTNVANFGAFVDIGVHQDG 683

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN--TGKP 697
           LVHIS LS   V     V+K GD V VK+L+ D  R +I L+M++ +Q   T KP
Sbjct: 684 LVHISMLSNSFVDDPHKVIKVGDVVKVKVLEVDIARKRIALTMRLDEQPSTTEKP 738


>gi|297833988|ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330716|gb|EFH61135.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1843

 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 581  TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            TG  +N++        +          +          V  +  G++ +V  +G F+   
Sbjct: 1336 TGRVLNVEPLSKRIEVTLKTVNAGGQPKSESYDMKKLHVGDMISGRIKRVEPYGLFIDID 1395

Query: 641  G-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 GL HI+QLS +R+       K G++V  K+L  D ++ +I L MK
Sbjct: 1396 QIGMVGLCHITQLSDDRIENVQARYKAGESVSAKILKLDEEKRRISLGMK 1445



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K+ + D     ++ SS   +    E + S  +  + N +  G V  +++ G FV F G 
Sbjct: 631 DKLLVLDIEGNNLSLSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGR 690

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             G    S+   +  A  S+    G +V   ++D + ++ +I LS+K 
Sbjct: 691 LTGFAPRSKAIDDPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQ 738



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           +  G + K+   G FV F     G V   +L  E  +    V   G+ V  ++       
Sbjct: 505 VTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGS 564

Query: 681 GKIKL--SMK 688
            +I L  S+K
Sbjct: 565 RRITLNDSIK 574



 Score = 44.1 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 621  KIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             I  G++ K++    G  V       G VH ++++   V    D  +EG  V  K+L+  
Sbjct: 1177 DILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPNPLDGFREGQFVKCKVLEIS 1236

Query: 679  DRGK----IKLSMKV 689
               K    I+LS++ 
Sbjct: 1237 SSSKGTWQIELSLRT 1251



 Score = 40.7 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E             + K +V+ V  FGA V F G    +  +  +S   V K     K
Sbjct: 402 AFEGPVFTHSDVRPGMVTKAKVISVDTFGAIVQFAGGLKAMCPLRHMSEFEVMKPRKKFK 461

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            G  +  ++L      +I ++ K     +  PI+
Sbjct: 462 VGAELVFRVLGC-KSKRITVTYKKTLVKSKLPIL 494



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 623  YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             +G V   M  G F+      +  V +S L    V +       G  V  ++L+ +    
Sbjct: 1288 VQGYVKNTMSKGCFIILSRKVEAKVKLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSK 1347

Query: 682  KIKLSMKVVDQNTGKP 697
            +I++++K V+   G+P
Sbjct: 1348 RIEVTLKTVN-AGGQP 1362


>gi|78357359|ref|YP_388808.1| RNA-binding domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219764|gb|ABB39113.1| RNA binding domain protein, S1 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 740

 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G V  V  FGAFV     +DGLVHISQL+ + V   ++VV+    V V++L+ D  
Sbjct: 669 MVLPGVVTNVTAFGAFVDIGVHQDGLVHISQLADKFVRDPAEVVRVRQQVQVRVLEVDHK 728

Query: 680 RGKIKLSMKV 689
           R +I LSMK 
Sbjct: 729 RRRISLSMKQ 738


>gi|110638729|ref|YP_678938.1| S1 RNA-binding domain-containing protein [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281410|gb|ABG59596.1| S1 RNA-binding domain protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 754

 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   +  + D   +    +    E A  +       P +     G +  V  FG FV   
Sbjct: 607 TLQDIFQELDKPGRDPRQTFEVFEFAEGVKEMKDLRPGMK--LPGIITNVTKFGVFVDIG 664

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             +DGL+HIS LS   ++  S+VVK    V V +L+ D+ R +I LSMK
Sbjct: 665 VHQDGLIHISHLSDRFISDPSEVVKVQQKVQVTVLEVDEARKRISLSMK 713


>gi|220909013|ref|YP_002484324.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219865624|gb|ACL45963.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
          Length = 292

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
                   +      +  ++ +G V  +  +G  +   G   GL+HI+  S +RV     
Sbjct: 171 CSQKIARRQQRLQEFDYGQLVQGTVRDIRPYGLMIDLTGVL-GLLHINDFSEKRVGSLQA 229

Query: 663 VVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            V+ G  +   + + D +RG+I LS ++++   G+
Sbjct: 230 HVQVGTPIKAIVTNLDAERGRISLSTRLLENRPGE 264



 Score = 38.7 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV-KEGDTVWVKLLD 676
           EV +  +G+VV +   GA++   G     +   ++      K +DV+    D  ++ +  
Sbjct: 21  EVGQTVRGKVVNLDSDGAYIDIGGKSTAFLPAHEVLVPPGKKLADVLPLRSDRDFLIIRG 80

Query: 677 FDDRGKIKLSMKVVD 691
            D  G+I LS+K ++
Sbjct: 81  QDAEGQISLSLKRLE 95


>gi|289548470|ref|YP_003473458.1| RNA binding S1 domain protein [Thermocrinis albus DSM 14484]
 gi|289182087|gb|ADC89331.1| RNA binding S1 domain protein [Thermocrinis albus DSM 14484]
          Length = 523

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +     +    +V    K +V  +  FGAF+ F    DGL+ IS++S +        ++E
Sbjct: 419 QNPWDIVAQRYKVGDRVKLRVRSLHTFGAFLEFPEGIDGLLPISEMSKD------TKLEE 472

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
           G  V V++++     +I LSMK  ++   + I+
Sbjct: 473 GQEVEVRIIELVPGNRITLSMK--EEQPVEEII 503



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +          V     G+V K+    A V   G   G++H S LS  R  +  +V+K G
Sbjct: 337 KPWEEFLKEHPVGSKVVGRVEKIEGASAIVDL-GKVRGIIHRSDLSWTRPGRIEEVLKVG 395

Query: 668 DTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           +     +L  + R  IKL +K + QN  
Sbjct: 396 EEREFAVLGSEGR-YIKLGIKQLTQNPW 422



 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
            G KV   +V +    V    D  V ++     E+    +  R +  + E   +  G+V+
Sbjct: 131 KGLKVGSRVVAKIKQLVQEGKDLKVVLSEREYLEVRKEAKKERLLKRLKEG-DVIWGRVI 189

Query: 629 KVM-DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLS 686
           K+  + G  +   G     +   +LS  R     +  + G+ + VK+      G+ I +S
Sbjct: 190 KIDPEKGITLLVQGVLRAFLPKEELSWGRDKNPYNYAEVGERLKVKVKRIPKDGQFIFVS 249

Query: 687 MKVVDQNTGKPI 698
           ++ + +N    I
Sbjct: 250 LRELKENPWLKI 261



 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
               I D  +     +G+VV+V + G  V      +G V  S++S +       V  +GD
Sbjct: 257 PWLKIKDTLKKGDKVEGRVVEVNEKGLVVELSEGVEGFVPKSEISYD-----GTVPNKGD 311

Query: 669 TVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            +   +LD D   + + LS+K       + 
Sbjct: 312 RISAIVLDLDVGKRSLILSIKRALPKPWEE 341


>gi|160887425|ref|ZP_02068428.1| hypothetical protein BACOVA_05444 [Bacteroides ovatus ATCC 8483]
 gi|156107836|gb|EDO09581.1| hypothetical protein BACOVA_05444 [Bacteroides ovatus ATCC 8483]
          Length = 1862

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 617 PEVNKIYKGQVVKVM-DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           P V  I + ++  +  D GAF       DGL+ +  +S    + T   + EGD + VK++
Sbjct: 7   PSVGDIIRVKITSIKPDLGAFAKMPNGVDGLIRLHDISWSNQSVTLSSLSEGDVLDVKVI 66

Query: 676 DFDDRGKIKLSMKVVDQNT 694
                GK+ LS K +  N 
Sbjct: 67  KELPDGKLNLSRKNLLPNP 85



 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 13/85 (15%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           R+ +       E   IYK  +  V  FG  V+  G    LVH+S+L        +   KE
Sbjct: 78  RKNLLPNPRTVEKGTIYKVIIKSVESFGLIVNL-GDSTALVHVSEL-------PTIEYKE 129

Query: 667 GDTVWVKLLD--FDD---RGKIKLS 686
           G+ +   ++D  +D    R KI +S
Sbjct: 130 GEEITCVVIDNNYDPEKHRNKISMS 154


>gi|67924399|ref|ZP_00517828.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
 gi|67853760|gb|EAM49090.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
          Length = 717

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 92/234 (39%), Gaps = 31/234 (13%)

Query: 485 HLGHMDFKVAGTD-----SGIT-----AMQMDMKIGGI--SENIMVMALQQAKRGRLHIL 532
           +   +D   A        SGIT      +       GI  +   ++   +   +      
Sbjct: 487 NYVGVDLNTASKQLLTFVSGITPTIANNIVSYRDKNGIFNNRKELLKVSKLGPKAYEQAA 546

Query: 533 NEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA---KVNIDD 589
             +     ++ L      P    +    + I   +G+    I  I  +  +      + D
Sbjct: 547 GFLRIRGGKNPLDNTAVHPESYTV---VETIIKQLGVSLSDINNISSRLKSLDLNTFVTD 603

Query: 590 DGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVKVMDFGAFV 637
              +      +AE+E      RE  +  T    V +I         +G +  V+ FGAF+
Sbjct: 604 TIGLPTLEDVIAELEKPGRDPREEFKYATFKEGVTEISDLSEGMILEGVITNVVKFGAFI 663

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVV 690
                +DGL+HISQL+   V  T++VVK G+ V VK+L+ D++  ++ LSMK V
Sbjct: 664 DIGVHQDGLIHISQLANYFVNDTNEVVKVGEVVKVKVLEIDEKLKRVSLSMKEV 717


>gi|150021052|ref|YP_001306406.1| RNA-binding S1 domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149793573|gb|ABR31021.1| RNA binding S1 domain protein [Thermosipho melanesiensis BI429]
          Length = 123

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +++ FGA V         VHIS++++  V    D +K G  V  K+L     GK +L++K
Sbjct: 13  EILKFGANVELEDGEKAFVHISKIASTYVKSVDDYLKIGQEVEGKVLGKTRDGKWELTLK 72

Query: 689 V 689
            
Sbjct: 73  E 73


>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 229

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 9/169 (5%)

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
              G +   +GS+      T+ +  V  G RE+ +        ++          P A+ 
Sbjct: 1   MSTGTVSHANGSAYLELAGTRVMAAV-YGPRENTRAGGLQQFNEQAVLQCDVARAPFASP 59

Query: 387 EVSRMGAPSRREI------GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
                                      A+   +        ++ +   I   DG +  A 
Sbjct: 60  RDDARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALAAA 119

Query: 441 VCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
           +   +LAL DAG+ ++  V   ++ L  + +  I+L D +  E+     
Sbjct: 120 INCCTLALADAGIEMNDMVTAASVALAANTN--IVLWDPTHLEESRASA 166



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 28/171 (16%)

Query: 18  LETGRIARQSDGAVLATYGETVVLATVVYDRS------LKDGQDFFPLTVNYQERTYAVG 71
           + TG ++  ++G+       T V+A V   R       L+   +   L  +       V 
Sbjct: 1   MSTGTVSH-ANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCD-------VA 52

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----------FSKCYKNETQVIINVMQHD 121
           + P    R ++R   +    +   DR                 K  K+   + + ++  D
Sbjct: 53  RAPFASPRDDARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDD 112

Query: 122 LESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVL--NPRLDED 170
             +     ++   + AL  +G+     V  A V       ++  +P   E+
Sbjct: 113 GGALA--AAINCCTLALADAGIEMNDMVTAASVALAANTNIVLWDPTHLEE 161


>gi|294495170|ref|YP_003541663.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
           DSM 5219]
 gi|292666169|gb|ADE36018.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
           DSM 5219]
          Length = 187

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 20/159 (12%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              PR+    +       +       +   +    A  +ID+ G   I     A    A 
Sbjct: 12  RVAPRLLADDVRVSVKNALKTKLEGRVDKKIGSVVAITDIDEIGEGHILVGDGAVYYDA- 70

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
               +I  +P + ++ +G+VV+ ++FGAFV   GA DGL+H+SQ++ + +          
Sbjct: 71  -TFEAIMFIPTLQEVIEGEVVETVEFGAFVSI-GAMDGLLHVSQITDDFMSYDGKNGRLI 128

Query: 658 -AKTSDVVKEGDTVWVKL--LDFDDRG----KIKLSMKV 689
               + V+ EGD V  ++  +  ++R     KI L+M+ 
Sbjct: 129 SKNVNKVLSEGDRVRARIVAVSINEREPRDSKIGLTMRQ 167


>gi|38234105|ref|NP_939872.1| putative transcriptional accessory protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200367|emb|CAE50054.1| Putative transcriptional accessory protein [Corynebacterium
           diphtheriae]
          Length = 758

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 12/130 (9%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
            G   I  IV +      +D  G         A  +   E I       +   + +G V 
Sbjct: 598 FGIPTITDIVAE------LDKPGRDPRPEFKTATFKEGIENI----SDLKPGMVLEGTVT 647

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            V  FGAFV     +DGLVH+S LS   V+     V  G  V VK++D D  R +I L+M
Sbjct: 648 NVAAFGAFVDVGVHQDGLVHVSALSDSFVSDPHQFVHSGQVVRVKVVDVDTQRKRIGLTM 707

Query: 688 KVVDQNTGKP 697
           + ++ +  KP
Sbjct: 708 R-LNDDPAKP 716


>gi|33235571|dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
 gi|50508626|dbj|BAD31015.1| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
          Length = 1668

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G  ++ +        S        +++          V  I  GQV +V  FG FV   G
Sbjct: 1178 GRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTIQG 1237

Query: 642  AR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +    L H+S+LS E V       K GD V  K+L  D +R ++ + MK
Sbjct: 1238 SELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIGMK 1286



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 595  IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQL 652
             + S    I   ++ + +  +  +   I  G++ K++    G  +       G VH +++
Sbjct: 994  DSQSLPENIGETQKPLSATVEHTKQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEI 1053

Query: 653  STERVAKTSDVVKEGDTVWVKLLDFDDRG----KIKLSMK 688
                V +      EG  V  K+LD         ++ LS++
Sbjct: 1054 VDSWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLR 1093



 Score = 44.1 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D     +  S+   +      I S         ++ G V  +++ G FV F G   G   
Sbjct: 496 DVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSP 555

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
             +     V K S+    G +V   +L+ + +  ++KLS+
Sbjct: 556 KDKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSL 595


>gi|116749271|ref|YP_845958.1| RNA-binding S1 domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698335|gb|ABK17523.1| RNA binding S1 domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 788

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     RDGLVH+S+LS   V     VV+    V V +LD D +RG+I
Sbjct: 670 GIVTNVTAFGAFVDIGVHRDGLVHVSELSDCFVKDPRQVVRVQQRVTVTVLDVDLERGRI 729

Query: 684 KLSMKV 689
            LSMK 
Sbjct: 730 SLSMKE 735


>gi|297849666|ref|XP_002892714.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338556|gb|EFH68973.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 768

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E   E  R++     V  + K  + K+  FG F    G    LVH S++S +     +
Sbjct: 565 ENEEEVEKKRNLMAKLRVGDVVKCCIKKITYFGIFCELEG-VPALVHQSEVSWDATLDPA 623

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              K G  V  K+   D    +I LS+K +  + 
Sbjct: 624 SYFKIGQIVEAKVHQLDFALERIFLSLKEITPDP 657


>gi|255716870|ref|XP_002554716.1| KLTH0F11924p [Lachancea thermotolerans]
 gi|238936099|emb|CAR24279.1| KLTH0F11924p [Lachancea thermotolerans]
          Length = 224

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 36/232 (15%)

Query: 16  LKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQ---DFFPLTVNYQERTYAVGK 72
           +  +TG +  Q DG+     GET V+ +V      K  Q       L V  +        
Sbjct: 2   ISAQTGVL-DQVDGSCKLQCGETTVICSVTGPIEPKARQELPSQLALEVVVRP------- 53

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSK--CYKNETQVIINVM-QHDLESSPHV- 128
                   +  P   E L+   I   + P+ +K    +   Q+   ++   + E   +V 
Sbjct: 54  -------CKGVPNTREKLLEDQIRGVVTPVLAKYLYPRQLCQICFQILESGEPEDEYNVK 106

Query: 129 ---VSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYVLNPRLDEDQGS-------LDL 176
                + AA  AL+ SG+  +       V  +  N + ++NP  ++   S       L++
Sbjct: 107 ELNSCINAAYLALIDSGVALQSSFSSVCVSVLGSNNEILVNPTQEQLIKSDSTHILALEV 166

Query: 177 FVSGTQ-DAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAK 227
              G +   VL++E   +  +E+++ + +      C  V   + K  +   K
Sbjct: 167 GSGGKKIQNVLLIESNGDF-TEEIMFNVLSRAEKACVEVALELRKAVEDKIK 217



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 22/226 (9%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           ISAQ G+L +  GS     G+T  I  VT G  E +   +              + L   
Sbjct: 2   ISAQTGVLDQVDGSCKLQCGETTVICSVT-GPIEPKARQELP------------SQLALE 48

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES-------DGSSS 437
                  G P+ RE       R  + PVL +        +I  +I ES       +    
Sbjct: 49  VVVRPCKGVPNTREKLLEDQIRGVVTPVLAKYLYPRQLCQICFQILESGEPEDEYNVKEL 108

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD--EDHLGHMDFKVAG 495
            + +  + LAL+D+GV +    + + + ++   ++ ++          D    +  +V  
Sbjct: 109 NSCINAAYLALIDSGVALQSSFSSVCVSVLGSNNEILVNPTQEQLIKSDSTHILALEVGS 168

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
               I  + +    G  +E IM   L +A++  + +  E+ K + +
Sbjct: 169 GGKKIQNVLLIESNGDFTEEIMFNVLSRAEKACVEVALELRKAVED 214


>gi|313678768|ref|YP_004056508.1| S1 RNA binding domain-containing protein [Mycoplasma bovis PG45]
 gi|312950619|gb|ADR25214.1| S1 RNA binding domain protein [Mycoplasma bovis PG45]
          Length = 719

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 7/139 (5%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTVKIASSSLAEIEAAREM 609
           V  + I  D I +       V +   E    + +   I D            +     + 
Sbjct: 574 VNKLQIDLDNINSESLKNADVKQLATEFGSNEYDVKLIIDSLINPTKDIRDEKEGYKLKK 633

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE---RVAKTSDVVKE 666
                +  +V  I  G V  + DFG FV+    +  LVHIS++       VA   D+VK 
Sbjct: 634 DILNLEDLKVGMILDGSVQNITDFGIFVYIGIKQAVLVHISKMKKSPTHYVAHPKDLVKP 693

Query: 667 GDTVWVKLLDFDDRG-KIK 684
           GD V +++++ +    KI+
Sbjct: 694 GDVVTLEIIEINKENDKIQ 712


>gi|261416587|ref|YP_003250270.1| Tex-like protein protein-like protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373043|gb|ACX75788.1| Tex-like protein protein-like protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325637|gb|ADL24838.1| tex protein [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 797

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 105/331 (31%), Gaps = 40/331 (12%)

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ----FPYTLRI-------- 425
           Y+    A  E  +    +R  I  GR  +  +  ++    Q      Y   +        
Sbjct: 414 YSASMIAIAEFPKEDVTTRGAISIGRRLQDPLAELVKVDPQSIGVGQYQHDVNQRELKKR 473

Query: 426 VSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH 485
           + E+ ES  +     V  +S        P+   VAG++  L +    +      +G    
Sbjct: 474 LDEVVESCVNMVGVDVNSAS-------APLLSHVAGLSNTLSEAIVKYREE---NGAYAS 523

Query: 486 LGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
              +                 M+I G    +   A+       +  + E   V      +
Sbjct: 524 REDLKKVKGFGPKAFEQAAGFMRIPGAENPLDDSAVHPENYALVEKMAEKVGV---PVKE 580

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +      V+ + +  + + + +G                 +I  +              A
Sbjct: 581 MVGNADAVKGIKLD-EFLSDEVGRATLE------------DILKELQKPSRDPRKEFRYA 627

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             +      +        +G V  V +FGAFV     +DGLVHIS++S + V    DV+ 
Sbjct: 628 KFDDRIKTINDLVTGSWMEGVVTNVANFGAFVDIGVHQDGLVHISEISDKYVTDAKDVLT 687

Query: 666 -EGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
                    +    ++ +I LSMK  +Q  G
Sbjct: 688 VGDVVKVRVVAVDANQKRISLSMKQ-EQTDG 717


>gi|118486930|gb|ABK95298.1| unknown [Populus trichocarpa]
          Length = 405

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R +    ++  + K  + KV  FG FV   G    L+H S++S +     +   K G  V
Sbjct: 212 RHLMATLQIGDVVKCCIKKVTYFGIFVEVEG-VPALIHASEVSWDATLNPASCFKVGQIV 270

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNT 694
             K+   D    +I LS+K +  + 
Sbjct: 271 EAKVHQLDFTLQRIFLSLKEITPDP 295


>gi|308481795|ref|XP_003103102.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
 gi|308260478|gb|EFP04431.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
          Length = 256

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 27/240 (11%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +   R +  + G+     GS     G+T+ +           Q  +    T  N    
Sbjct: 31  RSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVL----------AQMYEKKHLTSVNKL-- 78

Query: 377 HYNFLPCATGEVSRMGAPSRREI------------GHGRLARRAIHPVLPQTAQFPYTLR 424
            YNF     G+     A ++  I                    ++  V+         + 
Sbjct: 79  -YNFSTGPEGDGKWEEAHAKVTITLKGVENETKVAELRADLTSSLSAVIFINKYPGKVID 137

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDED 484
           I   +   DG      +   +LAL  +G+      A   + L  +GD +I     S  ED
Sbjct: 138 IEVTVLSDDGGVLSTAITAVTLALAHSGIEHMGLTASAHVALKSNGD-YITDPSTSEAED 196

Query: 485 HLGHMDFKVAGTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
            +G + F         T + +  +I    +  ++  A Q+A      I   +   + E +
Sbjct: 197 AIGGVTFAFVPNLGQTTCVNLYGRIPLKATSPLLEFARQRAIALVPAIHKAVVNSVKERK 256



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 13/168 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTV------NYQERT 67
           RPL ++ G    Q DG+  A +G T VLA +   + L      +  +        ++E  
Sbjct: 37  RPLCVKCGVFGAQ-DGSGYAEFGNTRVLAQMYEKKHLTSVNKLYNFSTGPEGDGKWEEAH 95

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPH 127
             V     G             L S +   S     +K       + + V+  D      
Sbjct: 96  AKVTITLKGVENETKVAELRADLTSSL---SAVIFINKYPGKVIDIEVTVLSDDGGVLS- 151

Query: 128 VVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGSL 174
             ++ A + AL  SG+   G    A V    NG Y+ +P   E + ++
Sbjct: 152 -TAITAVTLALAHSGIEHMGLTASAHVALKSNGDYITDPSTSEAEDAI 198


>gi|269115294|ref|YP_003303057.1| hypothetical protein MHO_5200 [Mycoplasma hominis]
 gi|268322919|emb|CAX37654.1| Conserved hypothetical protein, putative RNAbinding protein
           [Mycoplasma hominis ATCC 23114]
          Length = 717

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 16/134 (11%)

Query: 556 MAIPPDQIRNVIGMGGKVIRGIVEQT-GAKVNIDDDGTVKIASSSLAEIEAAREMIRSIT 614
           +++  +Q+   +      I+ I+E     + +I DD    + S  +  I+          
Sbjct: 589 LSVDKEQLAKELNSDKYSIQLIIESLIAPEKDIRDDKPGFLVSDKVLTID---------- 638

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST---ERVAKTSDVVKEGDTVW 671
                 +I KGQ+  V DFGAF      ++ L+HI+ +     + +    DV+  GD V 
Sbjct: 639 -DITQGQIIKGQIQNVTDFGAFAFIGLKQNVLIHITNMKKKENQFIKHPLDVLNVGDNVN 697

Query: 672 VKLLDFD-DRGKIK 684
           ++++  D +  KI+
Sbjct: 698 IQIISIDKEHNKIQ 711


>gi|224074901|ref|XP_002304482.1| predicted protein [Populus trichocarpa]
 gi|222841914|gb|EEE79461.1| predicted protein [Populus trichocarpa]
          Length = 816

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R +    ++  + K  + KV  FG FV   G    L+H S++S +     +   K G  V
Sbjct: 568 RHLMATLQIGDVVKCCIKKVTYFGIFVEVEG-VPALIHASEVSWDATLNPASCFKVGQIV 626

Query: 671 WVKLLDFD-DRGKIKLSMKVVDQNT 694
             K+   D    +I LS+K +  + 
Sbjct: 627 EAKVHQLDFTLQRIFLSLKEITPDP 651


>gi|152978269|ref|YP_001343898.1| RNA-binding S1 domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150839992|gb|ABR73963.1| RNA binding S1 domain protein [Actinobacillus succinogenes 130Z]
          Length = 773

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 +   I +G +  V +FGAFV     +DGLVHIS LS   V     VVK GD V 
Sbjct: 643 EDITDLQPGMILEGTITNVTNFGAFVDIGVHQDGLVHISGLSDRFVENPHQVVKTGDVVK 702

Query: 672 VKLLDFDD-RGKIKLSMKVVD 691
           VK+LD D  R +I L+M++ +
Sbjct: 703 VKVLDVDVARRRIALTMRLEE 723


>gi|218188559|gb|EEC70986.1| hypothetical protein OsI_02640 [Oryza sativa Indica Group]
          Length = 361

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           +    +T + E   + +G V K+  +GA V   G  R GL+HIS +S  RV   SD++K 
Sbjct: 276 KKAWEMTYLKEG-TLLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKI 334

Query: 667 GDTVWVKLLDFDDRGKIKLSM 687
            + V V ++  +   KI LS+
Sbjct: 335 DEEVKVLVVKSNVPDKIALSL 355


>gi|8698727|gb|AAF78485.1|AC012187_5 Contains similarity to S1 protein from Homo sapiens gb|U27517 and
           contains a S1 RNA binding PF|00575 domain. EST
           gb|F15427, gb|F15428 comes from this gene [Arabidopsis
           thaliana]
          Length = 775

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E   E  R++     V  + K  + K+  FG F    G    LVH S++S +     +
Sbjct: 564 ENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELEG-VPALVHQSEVSWDATLDPA 622

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              K G  V  K+   D    +I LS+K +  + 
Sbjct: 623 SYFKIGQIVEAKVHQLDFALERIFLSLKEITPDP 656


>gi|270290931|ref|ZP_06197154.1| RNA-binding protein [Pediococcus acidilactici 7_4]
 gi|304385197|ref|ZP_07367542.1| general stress protein GSP13 [Pediococcus acidilactici DSM 20284]
 gi|270280327|gb|EFA26162.1| RNA-binding protein [Pediococcus acidilactici 7_4]
 gi|304328404|gb|EFL95625.1| general stress protein GSP13 [Pediococcus acidilactici DSM 20284]
          Length = 124

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 39/78 (50%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ +I + ++V + D+G F+     R GL+H+S+   + +         G+ V   +++ 
Sbjct: 3   KLGEILEVKIVGIRDYGLFIQDKKGRKGLIHVSECDNQYIRNMHHTFDIGEKVQAVVMED 62

Query: 678 DDRGKIKLSMKVVDQNTG 695
           D   +  LS++ + +  G
Sbjct: 63  DGNRRFALSIRALKETKG 80


>gi|163782100|ref|ZP_02177099.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882632|gb|EDP76137.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 535

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 78/194 (40%), Gaps = 27/194 (13%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQI---RNVIGMGGKVIRGIVE 579
           + +  R  ++  + + L +   +  E  P    +    ++I   R ++ +G + ++G+V 
Sbjct: 321 RIEPKRKRVILSIRQALPKPWEEFLEKNPVGSKITAKVEKIEGSRAIVDLGDEKVKGVVH 380

Query: 580 QTGAK-------VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE--------VNKIYK 624
           ++            +  +G  +       E +  +  ++ +T  P         V  +  
Sbjct: 381 RSDLSWTKPKRVEEVLQEGEEREFVVLGTEGKYIKLGVKQLTPNPWEIIQEKYSVGDVLT 440

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDR-GK 682
               +VM FGAF+      +GL+  S++         DV ++ G    VK++D + + GK
Sbjct: 441 LPSKEVMPFGAFLELPEGVEGLLPFSEV-------PKDVKLEPGQEYEVKIIDLNPKEGK 493

Query: 683 IKLSMKVVDQNTGK 696
           I  S+K +     K
Sbjct: 494 ITFSIKALRGEEEK 507



 Score = 44.9 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                T   +V  + + +V++V+  G  +      +G V + ++S        DV ++G 
Sbjct: 259 PWDKFTREHKVGDVIEAKVLQVVPKGVVLDLEEGLEGFVPLEEVSWN-----GDVPEKGT 313

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGKP 697
           +V  K+L  +  R ++ LS++       + 
Sbjct: 314 SVKAKVLRIEPKRKRVILSIRQALPKPWEE 343


>gi|167377661|ref|XP_001734490.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165904013|gb|EDR29386.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 150

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 66/151 (43%), Gaps = 13/151 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R DGR++  +R  + +VG++    GS L  + +++ I  V + T+++   +D       
Sbjct: 6   KRGDGREANEIRATTIKVGVISGAKGSCLIQKENSKVISSVQIKTQDES--IDF------ 57

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
            +F +   F       +      +R+EI    +  +++   + Q +     + +   + E
Sbjct: 58  -EFTVKVTFAQFENNSL----FNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFVME 112

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGI 462
            DGS   + +  SSLAL DA + +   +   
Sbjct: 113 QDGSVEDSIINSSSLALFDAEIQMDSIIIAT 143


>gi|15222076|ref|NP_172740.1| S1 RNA-binding domain-containing protein [Arabidopsis thaliana]
 gi|15028377|gb|AAK76665.1| putative heat shock factor protein hsf8 [Arabidopsis thaliana]
 gi|25055005|gb|AAN71967.1| putative heat shock factor protein hsf8 [Arabidopsis thaliana]
 gi|225897916|dbj|BAH30290.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190809|gb|AEE28930.1| S1 RNA-binding domain-containing protein [Arabidopsis thaliana]
          Length = 767

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E   E  R++     V  + K  + K+  FG F    G    LVH S++S +     +
Sbjct: 564 ENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELEG-VPALVHQSEVSWDATLDPA 622

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              K G  V  K+   D    +I LS+K +  + 
Sbjct: 623 SYFKIGQIVEAKVHQLDFALERIFLSLKEITPDP 656


>gi|145346010|ref|XP_001417490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577717|gb|ABO95783.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 17/196 (8%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R D R     R +   + ++    GS+    GDT+A   V  G R        L+G  R
Sbjct: 7   PREDARADAHCRALVVALDVVPAAAGSAYVELGDTKASCAV-YGPRRGRA---ELAGVDR 62

Query: 372 NDFMMHYNFLPCATGEV---------SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT 422
               +     P ATG           +R       + G  R  + A+   +   +     
Sbjct: 63  GTLDVDAYRAPFATGARALDGANRARARGRGARTADDGLARTVKEALSASVLTESFPKTQ 122

Query: 423 LRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGD 482
           +     + ++ G  ++A V  +S AL  AGV     V+        +     ++ D + +
Sbjct: 123 VDACVTVLDARGGEAVACVLAASAALARAGVACRDLVSACECARAGE----RMMLDPTRE 178

Query: 483 EDHLGHMDFKVAGTDS 498
           E         +A   S
Sbjct: 179 EIETSDGMVFLAQMSS 194



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 7/161 (4%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVG----KIPGGYLR 79
           + G+     G+T     V   R  +    G D   L V+     +A G            
Sbjct: 30  AAGSAYVELGDTKASCAVYGPRRGRAELAGVDRGTLDVDAYRAPFATGARALDGANRARA 89

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
           R       +  ++R +  ++          +TQV   V   D      V  ++AASAAL 
Sbjct: 90  RGRGARTADDGLARTVKEALSASVLTESFPKTQVDACVTVLDARGGEAVACVLAASAALA 149

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSG 180
            +G+     V   +      + +L+P  +E + S  +    
Sbjct: 150 RAGVACRDLVSACECARAGERMMLDPTREEIETSDGMVFLA 190


>gi|222424916|dbj|BAH20409.1| AT1G12800 [Arabidopsis thaliana]
          Length = 525

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E E   E  R++     V  + K  + K+  FG F    G    LVH S++S +     +
Sbjct: 322 ENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELEG-VPALVHQSEVSWDATLDPA 380

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              K G  V  K+   D    +I LS+K +  + 
Sbjct: 381 SYFKIGQIVEAKVHQLDFALERIFLSLKEITPDP 414


>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
 gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
          Length = 268

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 17/225 (7%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
            R++ R +  +RD+  ++G    +  S  +  G+T+ + +   G + D         ++ 
Sbjct: 31  KRINNRKNNEIRDMFIKLGTDGYSDASCFYSLGNTKILAL-IYGPKPD---------SKN 80

Query: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
             +     FL   +  ++   A    +     L    +  V+        ++ I   I +
Sbjct: 81  ATYDKGKVFLEIKSLNMNDDRANDESDENIKNLLLECVSSVILLDQYPQCSINIKCLIIQ 140

Query: 432 SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLV--KDGDDFIILSDISGDEDHLGHM 489
           +DG    AT+   SLAL++A + +   +  + +  +   +      L D+   E+     
Sbjct: 141 NDGGCLSATLTCISLALINAQIKMRDIIVSVNVNSIICPNTKRVFHLVDVDNLEEKYYGE 200

Query: 490 DFKVAGTDSGI-----TAMQMDMKIGGISENIMVMALQQAKRGRL 529
            +       GI     T           +   +   +  A+    
Sbjct: 201 KYDTNSITLGICLNLRTVCFFHGSGNSFNSKTLSEIISYAECACR 245


>gi|297839005|ref|XP_002887384.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333225|gb|EFH63643.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 501

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
            + +G V K++ +GA V    + R GL+HIS ++  R+   SDV++  ++V V ++    
Sbjct: 364 TLLEGTVAKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLF 423

Query: 680 RGKIKLSMKVVDQNTG 695
             KI LS+  ++   G
Sbjct: 424 PDKISLSIADLESEPG 439


>gi|213964688|ref|ZP_03392888.1| transcriptional accessory protein [Corynebacterium amycolatum SK46]
 gi|213952881|gb|EEB64263.1| transcriptional accessory protein [Corynebacterium amycolatum SK46]
          Length = 763

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I +G V  V  FGAFV     +DGLVH+S ++   V+   +VV+ G+ V VK+LD 
Sbjct: 646 QPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSNMARGFVSDPHEVVRSGEVVKVKVLDV 705

Query: 678 D-DRGKIKLSMKVVDQNT 694
           D +R +I LS+++ D  +
Sbjct: 706 DVERNRIGLSLRLDDDTS 723


>gi|268532254|ref|XP_002631255.1| C. briggsae CBR-CRN-5 protein [Caenorhabditis briggsae]
 gi|187036905|emb|CAP23570.1| CBR-CRN-5 protein [Caenorhabditis briggsae AF16]
          Length = 214

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 35/229 (15%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR--------EDEQYVDSLSGTQRND 373
           +R++  ++  L+   GS+ F +G T      + G          E+   +D         
Sbjct: 5   LREMRCELSFLKNADGSACFSQGSTCIWASCS-GPGDVHASKANEEAMTLDI-------S 56

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYT-LRIVSEITES 432
           +  +      +                      ++          FP+T L +     + 
Sbjct: 57  YRANCGDNKFSVL----------------NNIIQSTLAKAINLELFPHTGLVVTIHGIQD 100

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           DGS    ++ G+  AL+D G+P      G+ +  VK  D+ II      +    G + F 
Sbjct: 101 DGSMGAVSLNGACFALLDNGMPFETVFCGVLIVRVK--DELIIDPTAKQEAASTGKVLFA 158

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           V     G   +     IG      +  A   A+     I    + V+  
Sbjct: 159 VCKGTDGFPEVCSMDVIGNWDYLQLEAAWSLAQPSASAIFEFYTSVMKR 207



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 38/223 (17%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDG---QDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + +DG+   + G T + A+      +      ++   L ++Y+                 
Sbjct: 16  KNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYR------ANCGDNKF--- 66

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNE----TQVIINVMQHDLESSPHVVSMVAASAA 137
                       +++  I+   +K    E    T +++ +     + S   VS+  A  A
Sbjct: 67  -----------SVLNNIIQSTLAKAINLELFPHTGLVVTIHGIQDDGSMGAVSLNGACFA 115

Query: 138 LMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQD--AVLMVELE 191
           L+ +G+PFE    G  +  +  + +++P   ++  S    L     GT     V  +++ 
Sbjct: 116 LLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEAASTGKVLFAVCKGTDGFPEVCSMDVI 175

Query: 192 ANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
            N    D +   +    +  +P   AI +      K    +D 
Sbjct: 176 GN---WDYLQ--LEAAWSLAQPSASAIFEFYTSVMKRKHSVDE 213


>gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica]
          Length = 271

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 93/273 (34%), Gaps = 34/273 (12%)

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            ++     DI  +      L + VR DGR  + +R +     +      S++   G+T+ 
Sbjct: 5   EQLSRQIADICPEDHLKSFLQRDVRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKV 64

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA--- 405
           I  +T  T +        +  +   F +++ F    +      G P+  E+         
Sbjct: 65  ICGITAETIKPA-----AATPKDGSFSVNFEFSSVCSPNAKA-GPPN--EVAQTMSIFLD 116

Query: 406 ---RRAIH--PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP------ 454
              ++      +  +     +TL I     E DG+ + A +     +L D  +P      
Sbjct: 117 GILKQVFETNQLCIEPDLLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDE 176

Query: 455 -ISKPVAGIA-----------MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
             +KPV  +            +         I+L D +  E  LG     V  ++ G   
Sbjct: 177 ETAKPVVNLEKQSPVDLKMFPVSTTYGEFSGILLLDPTARETELGSSPITVVCSEKGALL 236

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
                    +S+  +  A++ +KR    I ++ 
Sbjct: 237 CFNRSGGSPLSQEQVAAAIENSKRRSSTIYDQY 269


>gi|284794093|pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related
           Nuclease 5(Crn-5)
 gi|284794094|pdb|3KRN|B Chain B, Crystal Structure Of C. Elegans Cell-Death-Related
           Nuclease 5(Crn-5)
          Length = 222

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 29/226 (12%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R++  ++  L+   GS+ F +G T      + G  +                       
Sbjct: 5   LREMRCELSFLKNADGSACFSQGATCIWASCS-GPGDVH--------------------A 43

Query: 382 PCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
             A+ E   +    R   G  +      +    +   +        T+ +     + DGS
Sbjct: 44  SKASDEAMTLDISYRANCGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGS 103

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
                + G+  AL+D G+P      G+ +  VK  D+ II      +    G + F V  
Sbjct: 104 MGAVAINGACFALLDNGMPFETVFCGVLIVRVK--DELIIDPTAKQEAASTGRVLFSVCK 161

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
              G   +     IG      +  A   A+     I +    V+  
Sbjct: 162 GSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKR 207



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 30/221 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDGQ---DFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + +DG+   + G T + A+      +   +   +   L ++Y+      G      L   
Sbjct: 16  KNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYR---ANCGDNKFNVL--- 69

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                N I+ S + +     LF       T + + V     + S   V++  A  AL+ +
Sbjct: 70  -----NNIIHSTLSNAINLELFPH-----TTISVTVHGIQDDGSMGAVAINGACFALLDN 119

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQD--AVLMVELEANQL 195
           G+PFE    G  +  +  + +++P   ++  S    L     G+     V  ++   +  
Sbjct: 120 GMPFETVFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIGH-- 177

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236
             D +   +    +  +P   AI    K   K  + +D + 
Sbjct: 178 -WDFIQ--LEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQL 215


>gi|168031842|ref|XP_001768429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680354|gb|EDQ66791.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1785

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 582  GAKVNID-DDGTVKIA-SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF 639
            G  +NID D G V+++  +S  + E    ++       +  ++  G + ++  FG FV  
Sbjct: 1282 GRIINIDADLGRVEMSLKTSGQKKELTSTLLGRRFGDFKEGEVVFGTIKRIEKFGIFVTI 1341

Query: 640  CGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKV 689
              +    + H+S+++           K GD V  ++L  D+ + +I L +K 
Sbjct: 1342 EQSSVVTMCHMSEVADHYFKDIDKHYKVGDRVRARVLKVDNTKQRISLGLKE 1393



 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
             +Q+++V  +G +  R +V      +++ D    K+  S+   +  A   + S     +
Sbjct: 587 HIEQLKSVTKVGFQFDRLLV------LDVTDKQ--KLIVSAKQSLLQAASSLPSDISQLQ 638

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
              +  G V  + D G FV F G   GL  + Q++ E V+  S+    G +V  ++L+  
Sbjct: 639 PQSVIPGYVANITDRGCFVRFLGRLTGLASVPQVADEFVSDPSNHFSVGQSVRAQVLEVY 698

Query: 678 DDRGKIKLSMKV 689
            D GK  L +K 
Sbjct: 699 HDTGKFSLCLKQ 710



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-R 680
           +  G +  + D G FV F     GLVH S L  E   K  +V + G ++  ++L  D   
Sbjct: 460 VTHGFITGIEDIGCFVSFYNDVKGLVHKSALGIEAGVKAENVFQVGQSIKCRVLRSDPAA 519

Query: 681 GKIKLS 686
            ++ LS
Sbjct: 520 RRLSLS 525



 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
             G V+ V  +GA V        L  +  +S  + +  S   + G  +  ++L  D    
Sbjct: 372 VTGTVIAVEPYGALVQLAEGVKALCPLQHMSEFQRSNPSSKFQVGSKLKFRVLSCDHHAK 431

Query: 682 KIKLSMK 688
           KI L+ K
Sbjct: 432 KITLTHK 438



 Score = 41.8 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 634  GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF--DDRGK--IKLSMK 688
            G  V    +  G VH++ LS E     +   KEG  V   +L    +  GK  I L+++
Sbjct: 1139 GISVQIAPSSFGRVHVTHLSDEWKDNPASAFKEGQFVRCVVLGVEKNPNGKTVIDLTLR 1197


>gi|17531759|ref|NP_496284.1| Cell-death-Related Nuclease family member (crn-5) [Caenorhabditis
           elegans]
 gi|3874232|emb|CAA90109.1| C. elegans protein C14A4.5, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|31747259|gb|AAP57301.1| cell death-related nuclease 5 [Caenorhabditis elegans]
          Length = 214

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 29/226 (12%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R++  ++  L+   GS+ F +G T      + G  +                       
Sbjct: 5   LREMRCELSFLKNADGSACFSQGATCIWASCS-GPGDVH--------------------A 43

Query: 382 PCATGEVSRMGAPSRREIGHGR------LARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
             A+ E   +    R   G  +      +    +   +        T+ +     + DGS
Sbjct: 44  SKASDEAMTLDISYRANCGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGS 103

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
                + G+  AL+D G+P      G+ +  VK  D+ II      +    G + F V  
Sbjct: 104 MGAVAINGACFALLDNGMPFETVFCGVLIVRVK--DELIIDPTAKQEAASTGRVLFSVCK 161

Query: 496 TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
              G   +     IG      +  A   A+     I +    V+  
Sbjct: 162 GSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKR 207



 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 30/220 (13%)

Query: 25  RQSDGAVLATYGETVVLATVVYDRSLKDGQ---DFFPLTVNYQERTYAVGKIPGGYLRRE 81
           + +DG+   + G T + A+      +   +   +   L ++Y+      G      L   
Sbjct: 16  KNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYR---ANCGDNKFNVL--- 69

Query: 82  SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLS 141
                N I+ S + +     LF       T + + V     + S   V++  A  AL+ +
Sbjct: 70  -----NNIIHSTLSNAINLELFPH-----TTISVTVHGIQDDGSMGAVAINGACFALLDN 119

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS----LDLFVSGTQD--AVLMVELEANQL 195
           G+PFE    G  +  +  + +++P   ++  S    L     G+     V  ++   +  
Sbjct: 120 GMPFETVFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIGH-- 177

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSK 235
             D +   +    +  +P   AI    K   K  + +D +
Sbjct: 178 -WDFIQ--LEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQ 214


>gi|169844731|ref|XP_001829086.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea
           okayama7#130]
 gi|116509826|gb|EAU92721.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea
           okayama7#130]
          Length = 1462

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +  +I KG +  V D   FV   G  DG++  +  +  R+   +   K G+ +  K+L  
Sbjct: 518 KPGEIVKGTIKSVSDSAIFVSLSGNIDGVIWPNHFADIRLKHPTRRFKPGNPIKCKVLVV 577

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D DR +I L+ K     +  PIV
Sbjct: 578 DSDRKRISLTAKKTLLESDLPIV 600



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 575  RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
            R +V+     +++D+         +    + +RE       V E  KI  G + ++  +G
Sbjct: 932  RQLVKGRVLSIDVDN----NQVELTFKSGDLSREKKSLKDTVKEGQKI-SGVIKRIEHYG 986

Query: 635  AFVHFCGAR-DGLVHISQLSTERVAKTSDVVK---EGDTVWVKLLDFDDRGKIKLSMK 688
             F+   G +  GL H +QLS    A  ++ ++    GD V   ++   ++G+I LS+K
Sbjct: 987  LFIEIKGTKLTGLCHKTQLSDNPDADVAEALRQFRVGDLVKAAVIA-SEKGRISLSLK 1043



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   S     +V    +G V  + + G FV      D  V I +L  E V       KE 
Sbjct: 873 DREISELSDLQVGDTVRGFVKNIANQGLFVTIGRGIDARVQIRELFDEYVKDWKPRFKER 932

Query: 668 DTVWVKLLDFD-DRGKIKLSMK 688
             V  ++L  D D  +++L+ K
Sbjct: 933 QLVKGRVLSIDVDNNQVELTFK 954



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 3/116 (2%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             KV + D    +I+ ++   +  +   I S     +V  +  G + KV++    V F  
Sbjct: 571 KCKVLVVDSDRKRISLTAKKTLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHLMVEFFN 630

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK--VVDQNT 694
                V   + S     K +D    G  V V++   D ++G+I  S++   V Q  
Sbjct: 631 NLKASVSAKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQTP 686



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 100/303 (33%), Gaps = 50/303 (16%)

Query: 425 IVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD------ 478
           I  ++   D      ++      L+++ +PI   V  + +G V  G  F +L        
Sbjct: 570 IKCKVLVVDSDRKRISLTAKK-TLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHLMVEF 628

Query: 479 -------ISGDEDHLGH----MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRG 527
                  +S  E    H     D    G    +    +D + G I+ +I   A+ Q    
Sbjct: 629 FNNLKASVSAKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQTPVV 688

Query: 528 RLHILNEMSKV----------------LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
            ++++ E   V                       L           I P Q+  ++  G 
Sbjct: 689 DVNVVEEGEAVGGTIAEVHAEHIVITLQPTKVRALLTVKSLASHRNISPAQVHKLVKPGD 748

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
            +   IV          + G V + +    +  A  +   S+  V    ++  G+V++  
Sbjct: 749 SIEDLIVATKNP-----EKGIVIVTTKPKPKAAAPLKGQVSLETVAVGQQV-GGRVLRHT 802

Query: 632 DFGAFVHFCGARDGLVHISQLSTER-VAK---TSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
             GA V       G++H +  + +  V K     D +     +   ++  D D+ ++ LS
Sbjct: 803 KQGALVKITSKISGILHPTDTADDYDVDKAFPPVDSL-----ITASVVRVDKDKQQLTLS 857

Query: 687 MKV 689
            + 
Sbjct: 858 TRE 860


>gi|302824300|ref|XP_002993794.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
 gi|300138357|gb|EFJ05128.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
          Length = 433

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-------ARDGL 646
            ++      + A      S        +I  G++  +  FG F+           A   L
Sbjct: 272 PLSGHIEMSLTATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCL 331

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            H+S +S + +   S + K G  V VK+L  D +  +I L MK 
Sbjct: 332 CHVSGVSYDFIQDLSTLYKVGQCVQVKILKVDAETKRISLGMKA 375


>gi|324512760|gb|ADY45272.1| Exosome complex exonuclease MTR3 [Ascaris suum]
          Length = 202

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 27/213 (12%)

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
            + G+     GS+    G T+ +  +  G +E  + +D  +        +         G
Sbjct: 1   MRCGVFDTRKGSAFIEMGATKVVCTID-GPKEPSKSMD--TDCSEGVINVQV------VG 51

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
                        G   +   A+  ++         + +   + E DG    A +  SSL
Sbjct: 52  VA-----------GLSHVIESALRAIIALEHLSKMQVDVEVTVLEDDGGVLAAALMCSSL 100

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AL +AG+          + + +DG    +  D S  E         VA   S      + 
Sbjct: 101 ALCNAGIQTLDFCVAAHVIITEDGS---LKLDASSSEGDGC-ASVTVALMPS--LKQNVC 154

Query: 507 MKIGGI-SENIMVMALQQAKRGRLHILNEMSKV 538
            +  GI +      AL  A +  L++   +   
Sbjct: 155 CEHRGISTLKQFKSALSLAAKSSLYLWPVLKNA 187


>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
 gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
          Length = 259

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 101/268 (37%), Gaps = 32/268 (11%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             V  +I+   +   +  +  R DGR  +  R ++ +VG++ +  GSS  + GD++ +V 
Sbjct: 3   EDVIAEIKKDYI-YSLASQGDRADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVVG 61

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V +   E       +    +   + +   +P A+      G P    I   R+  R +  
Sbjct: 62  VKIQPGEP-----FMDTPDKGVIITNLELVPLASP-TFETGPPREDAIELARVVDRGVRE 115

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM-------------D 450
                   +  ++ Q  + + I   + + DG+   A   G+  ALM             D
Sbjct: 116 SEAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGLGED 175

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
           A +P+     G+    +       I+ D S DE+++      V     G  A      +G
Sbjct: 176 AKLPLEDVPVGVTAVKIGSS----IILDPSLDEENVASCKLTVITNKEGALAGMQKSGVG 231

Query: 511 GISENIMVMALQQAKRGRLHILNEMSKV 538
            ++ + +   +  AK     +  ++ ++
Sbjct: 232 TLTPDEVKYIVHIAKEKANVLRQKLEEI 259



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 35/235 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFF--PLTVNYQERTYAVG 71
           RP+ ++ G I + ++G+     G++ V+  V     ++ G+ F   P           V 
Sbjct: 33  RPVTIKVGVIGK-AEGSSDVMIGDSRVVVGV----KIQPGEPFMDTPDKGVIITNLELVP 87

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ----VIINVMQHDLE 123
                +      P E+ I ++R++DR +R       SK      Q    V I+V   D +
Sbjct: 88  LASPTFE--TGPPREDAIELARVVDRGVRESEAIDLSKLCIESGQKVWMVFIDVHVLDHD 145

Query: 124 SSPHVVSMVAASAALMLSGLPF--------------EGPVVGAQVDYINGQYVLNPRLDE 169
            +    + + A AALM + +P               + PV    V  I    +L+P LDE
Sbjct: 146 GNLMDAASMGAIAALMSAKIPNAKFGLGEDAKLPLEDVPVGVTAV-KIGSSIILDPSLDE 204

Query: 170 DQ-GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           +   S  L V   ++  L    ++    L+ D V   +     +   + + + ++
Sbjct: 205 ENVASCKLTVITNKEGALAGMQKSGVGTLTPDEVKYIVHIAKEKANVLRQKLEEI 259


>gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
          Length = 714

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 13/211 (6%)

Query: 324 DISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT--REDEQYVDSLSGTQRNDFMMHYNFL 381
           +    V  ++   GS L  +  T  ++ V   T  +  +Q  DS         ++  +  
Sbjct: 499 EFRCTVRYVEDCTGSCLVSKRGTTLLISVHGPTDVKASKQLPDS--------AVVQVHLT 550

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
             +  E+   G  S          +     ++         + IV +  ESDG      V
Sbjct: 551 TVSKDEIG--GRSSIDSGQMTLFLQNICQSIILVKLLPKRLITIVVQELESDGCFMEVAV 608

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGIT 501
            G  +AL+++ +P++   A   +     G    IL + +  E+            D  + 
Sbjct: 609 NGLCIALLESALPMNDMFAASTLAYY-GGASGQILLNPTAKEETEADCVLCCVYLDHVVE 667

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
            +      G +  +++   L QA+     IL
Sbjct: 668 NVFSIWTKGNMPLSMLDQVLSQAETQSRQIL 698



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPL--TVNYQERTYAVGKIPGGYLRRESRPT 85
            G+ L +   T +L +V     +K      P    V     T +  +I G       + T
Sbjct: 511 TGSCLVSKRGTTLLISVHGPTDVK-ASKQLPDSAVVQVHLTTVSKDEIGGRSSIDSGQMT 569

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
                I + I   +  L  K       +++  ++ D      V ++     AL+ S LP 
Sbjct: 570 LFLQNICQSI--ILVKLLPKRL---ITIVVQELESDG-CFMEV-AVNGLCIALLESALPM 622

Query: 146 EGPVVGAQVDYIN---GQYVLNPRLDED 170
                 + + Y     GQ +LNP   E+
Sbjct: 623 NDMFAASTLAYYGGASGQILLNPTAKEE 650


>gi|154246109|ref|YP_001417067.1| RNA-binding S1 domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154160194|gb|ABS67410.1| RNA binding S1 domain protein [Xanthobacter autotrophicus Py2]
          Length = 780

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTV 670
           +     +   + +G V  V  FGAFV     +DGLVH+S L+   V    +VVK G    
Sbjct: 649 NEMSDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVK 708

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGKP 697
              +     R +I LSM+  D   G+P
Sbjct: 709 VRVVEVDVKRKRIALSMRK-DDAGGRP 734


>gi|47220309|emb|CAG03343.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2384

 Score = 59.9 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++  G +V + DFG  V F     GLV +S+LS+E +++  DV   G  +  K+L  D +
Sbjct: 492 RVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQ 551

Query: 681 G-KIKLSMKVVDQNTGKP 697
             K+ LS K   +   + 
Sbjct: 552 KAKMLLSFKRAMEGAAEE 569



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 625  GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G V  +M +G FV F     GL   S ++   ++ T+   + G TV  K+ + D+  +
Sbjct: 1360 GWVKNIMPYGVFVEFPYGLVGLAPKSAMADRFISDTTASFQLGQTVMAKVTNLDEEKR 1417



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 583  AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF-----V 637
             K+N     +++ +  +  + +  +++        +  +I +G V  V   G F     V
Sbjct: 1063 QKINGKWQLSLRPSRLNPEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFISGMVV 1122

Query: 638  HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            H      GLV  + LS   +        EG  +  ++L  + +  K+ L+ K     +  
Sbjct: 1123 HLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKCRVLSVEPESKKLYLTRKKALVESSL 1182

Query: 697  PI 698
            P+
Sbjct: 1183 PL 1184



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            +         +  +I +G V  ++  G  VH      GLV  + LS   +        E
Sbjct: 389 IDKPFFRYHDLQAGQIVEGTVSVLLTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTE 448

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G  +  ++L  + +  K+ L+ K     +  P+
Sbjct: 449 GMKIKCRVLSVEPESKKLYLTRKKALVESSLPL 481



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
            ++  G +V + DFG  V F     GLV +S+LS+E +++  DV   G  
Sbjct: 1195 RVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRPEDVFYVGQR 1243


>gi|254424229|ref|ZP_05037947.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
 gi|196191718|gb|EDX86682.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
          Length = 795

 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            + +G V  V +FGAFV     +DGLVH+SQ+S   V+   ++V+ G  V V++++  ++
Sbjct: 644 MVLEGVVTNVANFGAFVDIGVHQDGLVHVSQMSDRYVSDPKEIVQVGQVVNVQVMEVQEK 703

Query: 681 -GKIKLSMK 688
             +I LSM+
Sbjct: 704 LKRIGLSMR 712


>gi|302824310|ref|XP_002993799.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
 gi|300138362|gb|EFJ05133.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
          Length = 429

 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG------ 641
           + D    ++      + A      S        +I  G++  +  FG F+          
Sbjct: 243 NPDIGKPLSGHIEMSLAATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLV 302

Query: 642 -ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            A   L H++++S + +   S + K G  V VK+L  D +  +I L MK 
Sbjct: 303 CAPGCLCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVDGETKRISLGMKA 352


>gi|124003430|ref|ZP_01688279.1| S1 RNA binding domain protein [Microscilla marina ATCC 23134]
 gi|123990999|gb|EAY30451.1| S1 RNA binding domain protein [Microscilla marina ATCC 23134]
          Length = 764

 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  V  FGAFV     +DGLVHIS+LS   V+  ++VVK    V V +LD D +R +I
Sbjct: 643 GVVTNVTKFGAFVDIGVHQDGLVHISELSNTFVSDPNEVVKVQQKVEVMVLDVDVERKRI 702

Query: 684 KLSMK 688
           +L+MK
Sbjct: 703 QLTMK 707


>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
           DSM 5456]
 gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
          Length = 328

 Score = 59.9 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 40/284 (14%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           V   ++   + T++    VR+DGR  +  R +    G + R  GS+L   G T  +  V 
Sbjct: 10  VIPKLKKHTMETLLSR-GVRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGV- 67

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
             T     + D+         ++H  F+P A+      G P    I   R+  R++  + 
Sbjct: 68  -KTDIVAPFPDT---PNEAVLVVHAEFVPLASPTFEP-GPPDENAIELARVIDRSLREIK 122

Query: 414 PQTAQ------FPYTLRIVSE--ITESDGSS-----------SMATVCGSSLALMDAG-- 452
                        +  R+  +  I   DG+             M T   +++   D    
Sbjct: 123 AVALDKLVLEPGKHVWRLYVDLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTV 182

Query: 453 --------VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
                   VP++  V  + +  + +     ++ D + +E+ +      VA +D G  A  
Sbjct: 183 DRSKFTGLVPVNHKVVTVTIAKLSN----RLIVDPTYEEEQVADTRLVVAVSDDGRIAGI 238

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
               +G ++   ++ A+  A       L  + + +   R +L +
Sbjct: 239 QKTGMGDLTYKEVLTAVAIALNKAQVYLKALEEKVVPYRAELEK 282



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 114/313 (36%), Gaps = 60/313 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV----VYDRSLKDGQDFFPLTVNYQERTYA 69
           RP+++  G I R ++G+ L   G+TVVLA V    V        +    L V+ +    A
Sbjct: 38  RPVEITPGYIDR-AEGSALVKLGQTVVLAGVKTDIVAPFPDTPNE--AVLVVHAEFVPLA 94

Query: 70  VGKIPGGYLRRESRPTENEILISRMIDRSIRPL---------FSKC---YKNETQVIINV 117
                 G       P EN I ++R+IDRS+R +                ++    V + +
Sbjct: 95  SPTFEPGP------PDENAIELARVIDRSLREIKAVALDKLVLEPGKHVWR--LYVDLYI 146

Query: 118 MQHDLE-------SSPHVVSMVAASAALMLSG------------LPFEGPVVGAQVDYIN 158
           + HD         ++   +      AA+                +P    VV   +  ++
Sbjct: 147 LNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTVDRSKFTGLVPVNHKVVTVTIAKLS 206

Query: 159 GQYVLNPRLDEDQ-GSLDLFVSGTQDAVLM--VELEANQLSEDVVLDAIIFGHNECKPVI 215
            + +++P  +E+Q     L V+ + D  +    +     L+   VL A+    N+ +  +
Sbjct: 207 NRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKTGMGDLTYKEVLTAVAIALNKAQVYL 266

Query: 216 EAISKLAKMCAKEPIVIDSKDFSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKM 275
           +A+ +          V+  +  ++LE+++++        +          + ++  +   
Sbjct: 267 KALEE---------KVVPYR--AELEKKLAEQAAGATPAAAVPAPAREHEEVVEQAESAG 315

Query: 276 VSYFSSEHSSWNE 288
                  +    +
Sbjct: 316 EETVEQSYEEERD 328


>gi|319777536|ref|YP_004137187.1| putative RNA binding protein [Mycoplasma fermentans M64]
 gi|318038611|gb|ADV34810.1| Putative RNA binding protein [Mycoplasma fermentans M64]
          Length = 718

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKL 674
           +   I  G V  + DFG FV+    +  L+HIS +   +   +  +S+VVK GD + +++
Sbjct: 641 KPGMILDGSVQNITDFGIFVYIGIKQAALIHISNMKRNKDHYIKHSSEVVKTGDNIKIQI 700

Query: 675 LDFD-DRGKIK 684
           L+ D +R +I+
Sbjct: 701 LEIDKERERIQ 711


>gi|308190203|ref|YP_003923134.1| transcription accessory protein TEX [Mycoplasma fermentans JER]
 gi|307624945|gb|ADN69250.1| predicted transcription accessory protein TEX [Mycoplasma
           fermentans JER]
          Length = 718

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKL 674
           +   I  G V  + DFG FV+    +  L+HIS +   +   +  +S+VVK GD + +++
Sbjct: 641 KPGMILDGSVQNITDFGIFVYIGIKQAALIHISNMKRNKDHYIKHSSEVVKTGDNIKIQI 700

Query: 675 LDFD-DRGKIK 684
           L+ D +R +I+
Sbjct: 701 LEIDKERERIQ 711


>gi|225463077|ref|XP_002263508.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 503

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           E         +   + +G V K+  +GA +      R GL+HIS ++  RV   SD++  
Sbjct: 350 EKDAWEKSHLQEGTLLEGTVKKIFPYGAQIMIGESNRSGLLHISNITRARVTSVSDLLTV 409

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            + V V ++      KI LS+  ++   G
Sbjct: 410 DEKVKVMVVKSMFPNKIALSIADLESEPG 438


>gi|115376634|ref|ZP_01463864.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
 gi|115366377|gb|EAU65382.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
          Length = 777

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           DGLVH+SQLST  V   S+V K GD + VK+L  D  R ++ LS++ V +
Sbjct: 666 DGLVHVSQLSTRFVKDXSEVAKVGDRLTVKVLSVDLARKRLALSVRAVQE 715


>gi|255085244|ref|XP_002505053.1| predicted protein [Micromonas sp. RCC299]
 gi|226520322|gb|ACO66311.1| predicted protein [Micromonas sp. RCC299]
          Length = 168

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQ-AIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           +R +  +   LQR  GS+ + +G  +  ++    G  + +   + +     +   +   +
Sbjct: 1   MRQMKTERNPLQRAEGSARWEQGTHRSVVMAAVYGPTQTQARKEDV-----DKLAIEVCW 55

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMAT 440
            P         G  +  ++   R  RR +  ++         LR+V ++  +DG+     
Sbjct: 56  RP-------PFGLQTPADVDAERALRRTLEQIVLTAKYPRLGLRVVVQVISADGAVEACA 108

Query: 441 VCGSSLALMDAGVPISKPVAGIAMG------LVKDGDDFIILSDISGDED 484
           +  +  ALMDAGV +   +    +           GD     +D + DE+
Sbjct: 109 MNATCHALMDAGVEMFGTLVAATVAIPKIIDGDTAGDALGPCADPTEDEE 158



 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 33/162 (20%)

Query: 27  SDGAVLATYG--ETVVLATVVYDRSL---KDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81
           ++G+     G   +VV+A V         K+  D   + V ++                 
Sbjct: 14  AEGSARWEQGTHRSVVMAAVYGPTQTQARKEDVDKLAIEVCWRPPF-------------- 59

Query: 82  SRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
              T  ++   R + R++  +   +K  +   +V++ V+  D        +M A   ALM
Sbjct: 60  GLQTPADVDAERALRRTLEQIVLTAKYPRLGLRVVVQVISADGAV--EACAMNATCHALM 117

Query: 140 LSGLPFEGPVVGAQVD---YINGQYV-------LNPRLDEDQ 171
            +G+   G +V A V     I+G           +P  DE++
Sbjct: 118 DAGVEMFGTLVAATVAIPKIIDGDTAGDALGPCADPTEDEER 159


>gi|1323143|emb|CAA97098.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|323337705|gb|EGA78950.1| Rrp46p [Saccharomyces cerevisiae Vin13]
          Length = 256

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 22/242 (9%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           + K R+D  + +    + A++G+L    GSS F+  DT+ I  VT G  E +   +  + 
Sbjct: 20  NTKNRLDSAEKKKKMSVQAEIGILDHVDGSSEFVSQDTKVICSVT-GPIEPKARQELPTQ 78

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSE 428
                 +                G  + RE       R  + P++ +        +I  +
Sbjct: 79  LALEIIV------------RPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQ 126

Query: 429 ITESDGSS-------SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG 481
           I ES               +  + LAL+DAG+ ++   A I + ++KD  D I+      
Sbjct: 127 ILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQ 186

Query: 482 DEDHLGHMDFKVAGTDSG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
            +  L      +   + G  +  + +    G  +E+ +   L+  ++    ++  + +++
Sbjct: 187 LKISLSVHTLALEFVNGGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRII 246

Query: 540 SE 541
            +
Sbjct: 247 QD 248



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 74/213 (34%), Gaps = 33/213 (15%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQD---FFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+      +T V+ +V      K  Q+      L +  +                +   
Sbjct: 47  DGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPA--------------KGVA 92

Query: 85  TENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSPHVV-----SMVAASAA 137
           T  E ++   +   + PL ++    +   Q+   +++   + +   +      + AA  A
Sbjct: 93  TTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLA 152

Query: 138 LMLSGLPFEGPVVGAQVDYING--QYVLNPRLDEDQGS-------LDLFVSGTQDAVLMV 188
           L+ +G+          +  I      +++P  ++ + S       L+    G     +++
Sbjct: 153 LVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVNGGKVVKNVLL 212

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
                  +ED +   +  G  +C+ ++  I ++
Sbjct: 213 LDSNGDFNEDQLFSLLELGEQKCQELVTNIRRI 245


>gi|213854708|ref|ZP_03382948.1| defective ribonuclease PH [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMD-----------AGVPISKPVAGIAMGL 466
              +T+ +  ++ ++DG +  A++ G+ +AL+D              P+   VA +++G+
Sbjct: 1   MGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGI 60

Query: 467 VKDGDDFIILSDISGDEDHLGHMD 490
           V        + D+   ED     D
Sbjct: 61  VNGE----AVCDLEYVEDSAAETD 80


>gi|238810101|dbj|BAH69891.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 722

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER---VAKTSDVVKEGDTVWVKL 674
           +   I  G V  + DFG FV+    +  L+HIS +   +   +  +S+VVK GD + +++
Sbjct: 645 KPGMILDGSVQNITDFGIFVYIGIKQAALIHISNMKRNKDHYIKHSSEVVKTGDNIKIQI 704

Query: 675 LDFD-DRGKIK 684
           L+ D +R +I+
Sbjct: 705 LEIDKERERIQ 715


>gi|32476474|ref|NP_869468.1| RNA-binding protein [Rhodopirellula baltica SH 1]
 gi|32447019|emb|CAD78925.1| conserved hypothetical protein-putative RNA-binding protein
            [Rhodopirellula baltica SH 1]
          Length = 1257

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 592  TVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHI 649
             +       A    A  ++ ++  + E+ +     G VV VM FG F+       GL+H+
Sbjct: 952  WLCDPFGEGASEGEAPAVMTAMPSLSELKQGDQVIGVVVGVMPFGVFIELSPDCSGLIHV 1011

Query: 650  SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
            S++S   V    + V+ GD +   +   D  R ++ LS
Sbjct: 1012 SRISDSYVEDLHEAVQVGDVITAWVTGTDAKRRRVALS 1049


>gi|218509466|ref|ZP_03507344.1| ribonuclease PH [Rhizobium etli Brasil 5]
          Length = 60

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371
           +R  GR ++ +R +S +    +   GS L   GDT  +   +L    +++    L  T +
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASL----EDKTPPWLRNTAK 56

Query: 372 NDFM 375
               
Sbjct: 57  GWVT 60



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD 52
          R +  E    ++ ++G+ L  +G+T VL T   +     
Sbjct: 12 RKVSFERN-FSKHAEGSCLVKFGDTHVLCTASLEDKTPP 49


>gi|159489442|ref|XP_001702706.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
 gi|158280728|gb|EDP06485.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
          Length = 1280

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLV 647
           DG ++++  +     ++   I+S+ ++ E  ++  G+V +V  FG FV   G     GL 
Sbjct: 835 DGRLELSLRTAPRSGSSGAAIQSLAELKEG-QLVSGRVRRVEKFGVFVEVEGNSSVVGLA 893

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           HIS+L+   V   S + K    V   +   D    ++ LSMK
Sbjct: 894 HISELADGAVKDISALFKPKQAVKAVVTKIDAAANRLSLSMK 935



 Score = 41.1 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V +    G FV     RDG + +  LS   +   +     G  +  +++  +  G+++
Sbjct: 780 GYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAAFPPGCRLEARVVALEADGRLE 839

Query: 685 LSMKV 689
           LS++ 
Sbjct: 840 LSLRT 844


>gi|91091176|ref|XP_971655.1| PREDICTED: similar to S1 RNA binding domain protein, putative
           [Tribolium castaneum]
 gi|270014098|gb|EFA10546.1| hypothetical protein TcasGA2_TC012802 [Tribolium castaneum]
          Length = 753

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 27/201 (13%)

Query: 494 AGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE-SRLQLGEFTPR 552
               SG T     +    I      MA +  K   L + +  +      ++ ++      
Sbjct: 577 VVPPSGETMKYNKLDSTNIHPESYEMATKLLKMFNLRLCDIGTTGFITIAKREVP----- 631

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRS 612
                +   ++  + G   + +R I++     +N D              +         
Sbjct: 632 ----KLDLSKLSQMFGSNEQTLRLILDAFCQPLNYDLRSDYDKKPVFKKGLIE------- 680

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
                +   +  G V  V  FG+FV      +GL+H+S+      +   D +  G+ V V
Sbjct: 681 -ISDLKSGIVLTGVVTNVTHFGSFVDIGVGINGLIHVSK------SNGLD-LHLGNKVEV 732

Query: 673 KLLDFD-DRGKIKL-SMKVVD 691
           K+L  D ++ +I L ++K+++
Sbjct: 733 KVLSIDVEKKRIGLQALKILN 753


>gi|219121604|ref|XP_002181153.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407139|gb|EEC47076.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 446

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
           R       V + Y G+VV    FG F+      D   H+S+   + V     V + GD V
Sbjct: 264 RKPVTDFRVGESYPGKVVYSKQFGVFLDIGSHSDAFCHVSRCQDDFVESAEAVHRPGDEV 323

Query: 671 WVKLLDFDD-RGKIKLSM 687
             ++L+ D  R +I +S+
Sbjct: 324 SARILEIDKRRKRITVSL 341


>gi|312195804|ref|YP_004015865.1| Tex-like protein [Frankia sp. EuI1c]
 gi|311227140|gb|ADP79995.1| Tex-like protein [Frankia sp. EuI1c]
          Length = 877

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDD 679
            + +G V  V  FGAFV     +DGLVH+S +S   V    +V K GD      L     
Sbjct: 672 MVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVRDPREVAKPGDIVKVKVLDVDVP 731

Query: 680 RGKIKLSMKVVD 691
           R +I L++++ D
Sbjct: 732 RKRISLTLRLDD 743


>gi|302669602|ref|YP_003829562.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394075|gb|ADL32980.1| S1 RNA binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 302

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 18/236 (7%)

Query: 467 VKDGDDFIILSDI-SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAK 525
           + D   F +  D+  GDE     +        +G   +        +S + +    +   
Sbjct: 55  MSDDPKFSVHRDVHVGDEVSATVI---STDDGNGNILLSKKEANQVLSWDKINELKEADS 111

Query: 526 RGRLHILNEMSKVLSESRLQLGEFTP--RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
              + +   +          +  F P  ++++  +  + + N +G   KV          
Sbjct: 112 YIDVKVSEAVKAGCVAFLEGIRGFIPASKLDLQFVEEEDLPNYVGKSLKV---------- 161

Query: 584 KVNIDDDGTVKIASSSLAEIEA-AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
           K+   D    K+  S+   ++  A      +    EV  + +G V  + ++GAFV+    
Sbjct: 162 KIITADKEANKLVLSAREYLKEQADARRAEMISNVEVGLVTEGVVESLQNYGAFVNLGNG 221

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
             GLVHISQ+  +R+A  S V+K G  V VK+    D GK+ LSMK +++     I
Sbjct: 222 MTGLVHISQICNQRIAHPSSVLKVGQKVKVKVTAIKD-GKLSLSMKALEEIAATEI 276



 Score = 44.5 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
                +   ++ I       +   I +G V+ V D    +       G++ +  +S +  
Sbjct: 1   MPEETMNDFKDEIDRSFRKVKEGDILEGTVIDVSDTEITLDLKYYTQGIIRVEDMSDDPK 60

Query: 658 AKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
                 V  GD V   ++  DD  G I LS K  +Q
Sbjct: 61  FSVHRDVHVGDEVSATVISTDDGNGNILLSKKEANQ 96


>gi|326437154|gb|EGD82724.1| hypothetical protein PTSG_03375 [Salpingoeca sp. ATCC 50818]
          Length = 186

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 8   EIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT 67
            +    R +      +A Q+DG+V+A  G + VL TV+ +    D Q    + V Y E  
Sbjct: 79  TVTCGKRQVSFRQDVMAWQADGSVIAEDGGSAVLGTVMAN--PHDVQRGKRVNVTYHEPD 136

Query: 68  YAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLF 103
            +V  I   +LRR+   TE E++ + ++   + P  
Sbjct: 137 ASVNVIFKNFLRRQLSETEREVVTTSVLRHVLVPRL 172


>gi|313113836|ref|ZP_07799403.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623863|gb|EFQ07251.1| S1 RNA binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 311

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%)

Query: 581 TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
           T   +   D          L+   A +       D  +   I    V  +  FGAF    
Sbjct: 83  TCFVIEALDTDENGQPFYRLSRALAQQMCKADYLDTLQPGDILPCTVTHIEPFGAFCDVG 142

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
                L+ I  +S  R++  +D V  G  +   + + D +G+  L+++ +
Sbjct: 143 CGISALLPIDCMSVSRISSPADRVSVGQQILCAVKNRDVQGRFVLTIREL 192


>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           ruminantium M1]
 gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           ruminantium M1]
          Length = 263

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 96/271 (35%), Gaps = 48/271 (17%)

Query: 297 DIQAKVVRTVML---DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV- 352
           DI  ++ R  +    +   R DGR  +  RDI  +  ++ +  GS+    GDTQ IV V 
Sbjct: 2   DIVPEITRKSITRLINDGKRADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVK 61

Query: 353 -TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--- 408
            T+G                   M +   LP A       G PS   I   R+  R    
Sbjct: 62  PTIGEP-------FADTPNLGVLMTNCELLPMAAPGFEP-GPPSPESIELARVVDRGIRE 113

Query: 409 -----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA------------ 451
                +  +  +  +  + L I   + + DG+           AL++             
Sbjct: 114 SELVDLEKLCIEEGKKVWMLFIDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDEV 173

Query: 452 --------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG--IT 501
                    +P+   +A      + +G    ++ D S +E+ +      +  TD G  I 
Sbjct: 174 VLSEDETMDLPVRDKLALSTFVKIGNG----LILDPSLEEEEILDARITIGVTDEGNHIC 229

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHIL 532
           +MQ   +   ++ + ++ A+  A   +  +L
Sbjct: 230 SMQKGGEEP-LTRDDILDAVHLAFETKDDLL 259



 Score = 41.8 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +E   I + ++G+     G+T V+  V      +   D   L V           +
Sbjct: 31  RDIFIEPNVIDK-AEGSARVKLGDTQVIVGV-KPTIGEPFADTPNLGVL----MTNCELL 84

Query: 74  PGGYLRRESR-PTENEILISRMIDRSIRPL----FSKCYKNETQ------VIINVMQHDL 122
           P      E   P+   I ++R++DR IR        K    E +      + ++V+ +D 
Sbjct: 85  PMAAPGFEPGPPSPESIELARVVDRGIRESELVDLEKLCIEEGKKVWMLFIDLHVIDYDG 144

Query: 123 ESSPHVVSMVAASAALM--------------LS-----GLPFEGPVVGAQVDYINGQYVL 163
            +     ++   SA L               LS      LP    +  +    I    +L
Sbjct: 145 -NLFDCANLAVMSALLNTKLPVAEYIDDEVVLSEDETMDLPVRDKLALSTFVKIGNGLIL 203

Query: 164 NPRLDEDQGSLD--LFVSGTQDA--VLMVELEANQ-LSEDVVLDAIIFGHN 209
           +P L+E++  LD  + +  T +   +  ++    + L+ D +LDA+     
Sbjct: 204 DPSLEEEEI-LDARITIGVTDEGNHICSMQKGGEEPLTRDDILDAVHLAFE 253


>gi|218247633|ref|YP_002373004.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257061032|ref|YP_003138920.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
 gi|218168111|gb|ACK66848.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
 gi|256591198|gb|ACV02085.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
          Length = 719

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I +G +  V++FGAFV     +DGLVHISQL+   +    +VVK G  V VK+L+ +++
Sbjct: 647 MILEGIITNVVNFGAFVDIGVHQDGLVHISQLADYFIKDPKEVVKVGQVVKVKVLEVNEK 706

Query: 681 -GKIKLSMK 688
             +I LSMK
Sbjct: 707 LKRINLSMK 715


>gi|327543215|gb|EGF29649.1| protein containing Ribosomal protein S1, RNA binding domain
           [Rhodopirellula baltica WH47]
          Length = 897

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            +       A    A  ++ ++  + E+ +     G VV VM FG F+       GL+H+
Sbjct: 589 WLCDPFGEGASEGEAPAVMTAMPSLSELKQGDQVIGVVVGVMPFGVFIELSPDCSGLIHV 648

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           S++S   V    + V+ GD +   +   D  R ++ LS
Sbjct: 649 SRISDSYVEDLHEAVQVGDVITAWVTGTDAKRRRVALS 686


>gi|115471081|ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
 gi|113610675|dbj|BAF21053.1| Os07g0203300 [Oryza sativa Japonica Group]
          Length = 689

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           G  ++ +        S        +++          V  I  GQV +V  FG FV   G
Sbjct: 199 GRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTIQG 258

Query: 642 AR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           +    L H+S+LS E V       K GD V  K+L  D +R ++ + MK
Sbjct: 259 SELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIGMK 307



 Score = 44.5 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQL 652
            + S    I   ++ + +  +  +   I  G++ K++    G  +       G VH +++
Sbjct: 15  DSQSLPENIGETQKPLSATVEHTKQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEI 74

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFDDRG----KIKLSMK 688
               V +      EG  V  K+LD         ++ LS++
Sbjct: 75  VDSWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLR 114


>gi|291224107|ref|XP_002732048.1| PREDICTED: hypothetical protein, partial [Saccoglossus kowalevskii]
          Length = 269

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  G+V     FGAFV     ++GL+H SQ+    V +    +  GD V VK+++ D +
Sbjct: 198 DVLTGRVENATHFGAFVDIGVGQNGLIHTSQMPH-YVLQNGTPLGPGDKVKVKVMNVDVN 256

Query: 680 RGKIKL 685
           RG+I L
Sbjct: 257 RGRIGL 262


>gi|182679167|ref|YP_001833313.1| RNA-binding S1 domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635050|gb|ACB95824.1| RNA binding S1 domain protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 766

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLD 676
           +     +G V  V +FGAFV     +DGLVHISQL+   V + +D+VK G       +  
Sbjct: 649 KPGMTLEGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVRVVEV 708

Query: 677 FDDRGKIKLSMKVVDQNT 694
              R +I LSM+  +   
Sbjct: 709 DVKRKRIALSMRTQEATP 726


>gi|19113410|ref|NP_596618.1| exosomal 3'-5' exoribonuclease, PH-like [Schizosaccharomyces pombe
           972h-]
 gi|74638748|sp|Q9P7R3|MTR3_SCHPO RecName: Full=Exosome complex component mtr3
 gi|6983772|emb|CAB75416.1| exosomal 3'-5' exoribonuclease, PH-like [Schizosaccharomyces pombe]
          Length = 257

 Score = 59.5 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 11/220 (5%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           RD +  R I  ++G   +  GSS F     +    V+ G R  +    + +         
Sbjct: 30  RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVS-GPRPSK----TFAFRSSAKLNC 84

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG-- 434
            +   P +T  V +    +  E  + ++   AI P +        ++ +  ++ ESDG  
Sbjct: 85  EFRLSPFSTS-VRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGAL 143

Query: 435 SSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
           ++  A +  +S A+ DA +     V G ++    + D++ I  D   +          + 
Sbjct: 144 ATLAAAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDERARAAKGSVVMG 203

Query: 495 GTDS--GITAMQMDMKIGGISENIM-VMALQQAKRGRLHI 531
              S   +T +           + +    ++ AK  RL I
Sbjct: 204 YMASLGHVTQVWERGTCSPSRLSFLTEKCIKNAKDTRLVI 243


>gi|328956762|ref|YP_004374148.1| ribonuclease R [Carnobacterium sp. 17-4]
 gi|328673086|gb|AEB29132.1| ribonuclease R [Carnobacterium sp. 17-4]
          Length = 787

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++        + ++     +V +IY+G +  V+ FG FV      +GLVHI
Sbjct: 610 EQTSKAERRAVDAERETDALKKTEFMADKVGEIYEGIIGSVLKFGLFVELPNTVEGLVHI 669

Query: 650 SQLSTERVAKTSD-----------VVKEGDTVWVKLLDFDDRGK 682
           S +  +      +           V + G  V VK+   D   +
Sbjct: 670 SNMKDDYFNYIEEQMMLVGERTGVVYRIGQKVKVKITKADPETR 713


>gi|302341581|ref|YP_003806110.1| Tex-like protein [Desulfarculus baarsii DSM 2075]
 gi|301638194|gb|ADK83516.1| Tex-like protein [Desulfarculus baarsii DSM 2075]
          Length = 776

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I   ++R  I +G  V   +   T   +  + +   +           A  + +     P
Sbjct: 578 IKQAELRRKIELGRYVDDRVGLPTLQDIIAELEKPGRDPRQGFEMFSFAEGVEKLEDLKP 637

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            ++    G V  V +FGAFV     +DGLVHIS+L+   VA    VVK    V V++L+ 
Sbjct: 638 GMS--LPGIVTNVTNFGAFVDVGVHQDGLVHISELTDGFVADPRQVVKVQQQVRVRVLEV 695

Query: 678 D-DRGKIKLSMK 688
           D +RG+I LSM+
Sbjct: 696 DLERGRISLSMR 707


>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
           kodakarensis KOD1]
 gi|73919277|sp|Q5JIR7|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
 gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
           kodakarensis KOD1]
          Length = 272

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 101/274 (36%), Gaps = 34/274 (12%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           ++ A ++R  +++   +  R+DGR  E  RD+  +V ++++  GS+    GDTQ +V   
Sbjct: 5   EVMASIMRDHIIELLREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLV--- 61

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA----- 408
               + E          R     +   +P A+      G P    I   R+  R      
Sbjct: 62  --GIKAELGEPFPDLPDRGVITTNVELVPLASPTFEP-GPPDENAIELARVVDRGIRESQ 118

Query: 409 ---IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----------- 454
              +  ++    +    + I   + +  G+   A+  G+  AL+   +P           
Sbjct: 119 AVDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEV 178

Query: 455 -ISK-----PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
            I       PV  + + +        I+ D S DE+ +      +   ++G  +     +
Sbjct: 179 EILDEYEPLPVNHVPIPVTFAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQKGE 238

Query: 509 IGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
            G      ++ AL+ A +    I  ++ K +  +
Sbjct: 239 AGAFKMEEVMYALEVALKKGNEIREKVLKAVGRA 272



 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 46/249 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L+++   I + ++G+     G+T VL  +     L +    FP   +    T  V  +
Sbjct: 34  RDLEIKVNVIEK-AEGSAWVRLGDTQVLVGI--KAELGEP---FPDLPDRGVITTNVELV 87

Query: 74  PGGYLRRESR-PTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHDL 122
           P      E   P EN I ++R++DR IR           +          + ++V+  D 
Sbjct: 88  PLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFIDVHVL--DH 145

Query: 123 ESSPHVVSMVAASAALMLSGLP---FEGPVVGAQV------------------DYINGQY 161
             +    S + A AAL+ + LP   +       ++                    I    
Sbjct: 146 GGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVNHVPIPVTFAKIGNSI 205

Query: 162 VLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           V++P LDE++   G L +    T       + EA     + V+ A+       K   E  
Sbjct: 206 VVDPSLDEERVMDGRLTITTDETGHISAAQKGEAGAFKMEEVMYALEVAL---KKGNEIR 262

Query: 219 SKLAKMCAK 227
            K+ K   +
Sbjct: 263 EKVLKAVGR 271


>gi|320353558|ref|YP_004194897.1| Tex-like protein [Desulfobulbus propionicus DSM 2032]
 gi|320122060|gb|ADW17606.1| Tex-like protein [Desulfobulbus propionicus DSM 2032]
          Length = 724

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 26/181 (14%)

Query: 510 GGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
            G+      +  Q A+     I   M +     R+QL  +                  G+
Sbjct: 551 SGVHPERYGIVEQMARECGCTISALMEEEHRRQRIQLDRYVQD---------------GI 595

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
           G   +  I+ + G       D     A+ + A      E +R    +P       G V  
Sbjct: 596 GLPTLEDILAELGKP---GRDPRRSFAAFAFAPGIERLEDLREGMRLP-------GIVTN 645

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVHISQL+   V   ++VVK    V V++L+ D  R +I LS++
Sbjct: 646 VTKFGAFVDIGVHQDGLVHISQLADRYVKDPAEVVKVRQQVQVRVLEVDVKRRRIGLSLR 705

Query: 689 V 689
            
Sbjct: 706 A 706


>gi|255572295|ref|XP_002527086.1| conserved hypothetical protein [Ricinus communis]
 gi|223533509|gb|EEF35249.1| conserved hypothetical protein [Ricinus communis]
          Length = 476

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
           + + E    ++N+      +  +  +     A EM+           + +G V K+  +G
Sbjct: 299 KELKENVSRRINVLITRINEDNNELILSEREAWEMLNLRE-----GTLLEGNVRKIFPYG 353

Query: 635 AFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQN 693
           A V      R GL+HIS ++  RV   SD++K  + V V ++      KI LS+  ++  
Sbjct: 354 AQVRIGETNRSGLLHISNITRSRVTAVSDLLKVDERVKVLVVKSMFPDKISLSIADLESE 413

Query: 694 TG 695
            G
Sbjct: 414 PG 415


>gi|239978292|ref|ZP_04700816.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
          Length = 273

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           G ++  ++ G  +      +        +R+        ++  G V  V  FG FVH  G
Sbjct: 72  GQEIEAEETGRWRGGQPHFSARACENPALRAFLLGCAPGQVVTGTVAGVHGFGVFVHVDG 131

Query: 642 ARD----GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
             +    G V +  L+   +   S  V+ G  +  +++  + R G+I LS+K + ++ 
Sbjct: 132 EPEGMCTGFVRVPDLTWGWIEHPSQAVEAGRRITAEVITSETRSGQIALSLKALQEDP 189



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G VV+++ FG  V       GL+H+S+L     A    +V EG+ + VK+ + D +R
Sbjct: 200 VLTGTVVRILPFGVLVRLAPDVVGLLHLSELGGGPSATPGRLVAEGEPITVKVAEVDLER 259

Query: 681 GKIKL 685
            +++L
Sbjct: 260 HRVRL 264


>gi|42522520|ref|NP_967900.1| hypothetical protein Bd0954 [Bdellovibrio bacteriovorus HD100]
 gi|39575052|emb|CAE78893.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 780

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKLLDFDD 679
            I  G V  V +FGAFV     +DGLVHIS LS + V     VV  GD      L     
Sbjct: 650 MICPGIVTNVTNFGAFVDIGVHQDGLVHISALSHKFVDDPRKVVNPGDHVTVKVLKVDVV 709

Query: 680 RGKIKLSMKVVD 691
           + +I L+MK+ D
Sbjct: 710 KNQISLTMKMDD 721


>gi|118618534|ref|YP_906866.1| transcriptional accessory protein Tex [Mycobacterium ulcerans
           Agy99]
 gi|118570644|gb|ABL05395.1| transcriptional accessory protein Tex [Mycobacterium ulcerans
           Agy99]
          Length = 787

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I  +          A I A            +V  + +G V  V  FGAFV     +DG
Sbjct: 621 DILAELEKPGRDPRPAFITATIAAGVEKVADLKVGMVLEGVVTNVAAFGAFVDVGVHQDG 680

Query: 646 LVHISQLSTERVAKTSDVVKEGD-TVWVKLLDFDDRGKIKLSMKVVDQN 693
           LVH++ ++   V+   +VV+ G       +    +R ++ LS+++ D+ 
Sbjct: 681 LVHVAAMAERFVSDPHEVVRSGQVVRVKVVDVDVERQRVGLSLRLNDEP 729


>gi|50365157|ref|YP_053582.1| fused polyribonucleotide nucleotidyltransferase/ribosomal protein
           S1 domain-containing protein [Mesoplasma florum L1]
 gi|50363713|gb|AAT75698.1| polyribonucleotide nucleotidyltransferase/predicted RNA-binding
           protein containing ribosomal protein S1 domain
           [Mesoplasma florum L1]
          Length = 78

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF-CGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           +NK+   ++  +  FGAF  F    ++  GL+HIS+++   V   +D VK G  V V +L
Sbjct: 1   MNKVISVKISDIAPFGAFAIFELDGKEYKGLIHISEIANTFVNDINDFVKVGQDVEVLIL 60

Query: 676 DF-DDRGKIKLSMKVVD 691
           +  D++ + KLS+K V+
Sbjct: 61  ELNDEKAQAKLSIKKVN 77


>gi|163784880|ref|ZP_02179650.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879849|gb|EDP73583.1| ribosomal protein S01 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 368

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
             A E             I    + ++  +G  V       G +H S+       +    
Sbjct: 254 TKALEENPWEKFPYSEGDIVTTVIKEINPYGLVVKV-ENLQGFIHKSETDHLHPERFKSK 312

Query: 664 VKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            KEG  V  K+++ D +  K+KLS+K   +N 
Sbjct: 313 FKEGQEVQAKIIELDRENQKLKLSIKQATENP 344



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
               +       +VVKV D GA V       G +  S  S  R     D +++G  +  K
Sbjct: 181 WSEIKEGMTIPAKVVKVQDNGAVVIIGDLIYGFLPASLYSWYREKSIKD-LQKGQEIEAK 239

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGK 696
           ++  D ++ K+ LS K +++N  +
Sbjct: 240 VVQKDTEKQKLILSTKALEENPWE 263


>gi|153839875|ref|ZP_01992542.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus AQ3810]
 gi|149746608|gb|EDM57596.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus AQ3810]
          Length = 168

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +     +   +    V  V   GA V      +G +  S++S +RV   S ++  G
Sbjct: 51  DPFNAYVADNKKGTLVNATVTAVDAKGATVEIAEGVEGYIRASEVSRDRVEDASLILSAG 110

Query: 668 DTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           D V  K    D + + I LS+K  D+   + 
Sbjct: 111 DVVEAKFTGVDRKNRVINLSIKAKDEAEEQE 141


>gi|269124162|ref|YP_003306739.1| RNA binding S1 domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268315488|gb|ACZ01862.1| RNA binding S1 domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 514

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E  ++  +   +     G +   +D+G  +   G   GL+H S++S  +     D    
Sbjct: 158 KENEKNFLNKLNLGDKITGTISNKLDYGMIIDL-GTLSGLLHSSEISWNKEKTLKD-FTV 215

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           G+ + VK+++ D +  KIKLS+K + +N    I
Sbjct: 216 GEKIDVKIIELDKETKKIKLSIKQLVENPWLKI 248



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           E+   K+   D  T KI  S    +E     IR    + +        V +V  FG  V 
Sbjct: 217 EKIDVKIIELDKETKKIKLSIKQLVENPWLKIREKYHIGQNID---APVKEVFSFGVVVD 273

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF-DDRGKIKLSMKVVDQNTGKP 697
             G R+ L+H+S L  +++       K+GD ++ +++D  D++ KI LS + V +   + 
Sbjct: 274 L-GDREDLIHVSDLYYKKIGNVEKEYKKGDVIFCEVIDINDEKEKIILSARTVFEKIWES 332

Query: 698 I 698
           +
Sbjct: 333 L 333



 Score = 51.8 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV--IGMGGK 572
           +++   +      +  I+     V  +    L +F    +I+ I   ++++        +
Sbjct: 302 DVIFCEVIDINDEKEKIILSARTVFEKIWESLDDFCLLNDIINIKVTRVKDFGFFAKTDE 361

Query: 573 VIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE-------------- 618
            +   V ++    N  DD  +K+  S   ++   ++  +++    +              
Sbjct: 362 NLEIFVPKSEYSWNKADDLNIKVGDSLDVKLIEIKKEDKNLVGSIKRLGKSPYDIASSKF 421

Query: 619 -VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
             N  Y+ ++  +++ G  V       GL+   +LS E +    +    GD +   + D 
Sbjct: 422 DKNTEYEVEITDILENGVLVRLTDDFKGLIPKKELSKEEIKDIKEHFNVGDKIKAVVFDK 481

Query: 678 DDRGKIKLS 686
           +++  I LS
Sbjct: 482 NNKNSILLS 490


>gi|13472550|ref|NP_104117.1| hypothetical protein mll2881 [Mesorhizobium loti MAFF303099]
 gi|14023296|dbj|BAB49903.1| mll2881 [Mesorhizobium loti MAFF303099]
          Length = 774

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIR------------SITDVPEVNKIYKGQVVK 629
             +V +D+   +      LAE+E      R                  +   + +G V  
Sbjct: 603 DPRVFVDERFGLPTVRDILAELEKPGRDPRPGFKTATFADGVDDIKDLKPGMLLEGTVTN 662

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAFV     +DGLVH+SQL+   +    +VVK GD V V+++D D  R +I LSM+
Sbjct: 663 VAAFGAFVDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVRVVDVDIKRKRIALSMR 722


>gi|325957967|ref|YP_004289433.1| translation initiation factor 2 subunit alpha [Methanobacterium sp.
           AL-21]
 gi|325329399|gb|ADZ08461.1| Translation initiation factor 2 subunit alpha [Methanobacterium sp.
           AL-21]
          Length = 259

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + P+   +  G V KV+++GAF        ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRMRKEWPDEGDLVVGTVHKVLNYGAFGSLEEYDGKEAFIHISEVSSGWVKNIRDYVRE 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
              +  ++L  +  +G + +S+K + ++
Sbjct: 61  NQKIVARVLRVNPKKGHVDVSLKRIRED 88


>gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
           2162]
 gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
           2162]
          Length = 286

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 100/296 (33%), Gaps = 45/296 (15%)

Query: 284 SSWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR 343
                       E+I   + R        R+DGR     R +   +  +Q+  GSSL   
Sbjct: 5   PEKEPLLPRLQVENIIKSIKR------GERIDGRGLYDYRPLEVVLNPIQKASGSSLVRL 58

Query: 344 GDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR 403
           G TQ I  V L   E                 +H  F+P A+      G P    I   R
Sbjct: 59  GGTQVIAGVKLELGEP-----FPDRPNEGVLQVHAEFVPLASPSFEP-GPPDENSIEIAR 112

Query: 404 LARRAIH-----PVLPQTAQFPYTLRIVSE---ITESDGSSSMATVCGSSLALMDAGV-- 453
           +  R++       +     +    + +V +   + +  G+ + A++  S LAL  A +  
Sbjct: 113 IIDRSLREPKAVKLDTLVVEPGKVVWVVFDDIYLVDHQGNITDASMMASMLALATARIPG 172

Query: 454 -------------------PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVA 494
                              PI+  V  + MG+  D     I+ D S +E+ +      +A
Sbjct: 173 LVKTETGYRVDNTKQTGPLPINTLVVTVTMGIYGDT----IVVDPSLEEEAVLDSFLTIA 228

Query: 495 GTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
             ++G         + G S N +  A+  A      ++  + K+L+     +    
Sbjct: 229 VDEAGRICGVQKRGMKGFSRNTLENAVNTALSKGRDLIELLRKILNNPGEYMKPLV 284



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 54/236 (22%)

Query: 27  SDGAVLATYGETVVLATVV------YDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRR 80
           + G+ L   G T V+A V       +     +G     L V+ +    A      G    
Sbjct: 50  ASGSSLVRLGGTQVIAGVKLELGEPFPDRPNEGV----LQVHAEFVPLASPSFEPGP--- 102

Query: 81  ESRPTENEILISRMIDRSIRPLFSKCYKNETQV-----IINVM-----QHDLESSPHVVS 130
              P EN I I+R+IDRS+R    K  K +T V     ++ V+       D + +    S
Sbjct: 103 ---PDENSIEIARIIDRSLRE--PKAVKLDTLVVEPGKVVWVVFDDIYLVDHQGNITDAS 157

Query: 131 MVAASAALMLSGL---------------------PFEGPVVGAQVDYINGQYVLNPRLDE 169
           M+A+  AL  + +                     P    VV   +       V++P L+E
Sbjct: 158 MMASMLALATARIPGLVKTETGYRVDNTKQTGPLPINTLVVTVTMGIYGDTIVVDPSLEE 217

Query: 170 DQGSLD--LFVSGTQ-DAVLMVEL-EANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
            +  LD  L ++  +   +  V+       S + + +A+    ++ + +IE + K+
Sbjct: 218 -EAVLDSFLTIAVDEAGRICGVQKRGMKGFSRNTLENAVNTALSKGRDLIELLRKI 272


>gi|149197730|ref|ZP_01874780.1| RNA binding domain protein, S1 [Lentisphaera araneosa HTCC2155]
 gi|149139300|gb|EDM27703.1| RNA binding domain protein, S1 [Lentisphaera araneosa HTCC2155]
          Length = 705

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V     G V  V  FGAFV     +DGL+HIS+L    VA  ++VV+    V VK+++ 
Sbjct: 633 HVGMKVPGLVTNVTKFGAFVDVGVHQDGLIHISKLKHGFVADPAEVVRVRQQVEVKVIEV 692

Query: 678 D-DRGKIKLSM 687
           D  R +I LS+
Sbjct: 693 DAKRKRISLSL 703


>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
 gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
          Length = 242

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 16/169 (9%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           R +  +  +L R  GS+ + +  +  +  V  G R+ +     L        ++   F P
Sbjct: 3   RTLVCERAVLDRADGSAKWTQEGSSVLAAV-YGPRQAK-----LQKEDAERAVVEVVFKP 56

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVC 442
            A  +    G   R         R  +  V+P       ++ +V ++ + DG +    + 
Sbjct: 57  RAGLQ----GHEDR---SLELEIRGILEGVIPLGMFPRTSVMVVLQVLQDDGGALSCALN 109

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDF 491
            ++ AL+DAGVP++   + ++  L  D     ++ D    E+      F
Sbjct: 110 AAAAALVDAGVPLNSMFSSVSCVLTSDR---RLVLDPDALEEQAAAARF 155


>gi|326437156|gb|EGD82726.1| hypothetical protein PTSG_12013 [Salpingoeca sp. ATCC 50818]
          Length = 78

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 113 VIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYIN-GQYVLNPRLDEDQ 171
           V   V+  D E+ P V+++ AA+AAL  +G+P++GPV G ++     G  V NP L   +
Sbjct: 5   VSCRVLSADGEADPTVLAINAAAAALQRAGVPWDGPVAGVRIARTQRGALVTNPDLKTLE 64

Query: 172 G 172
           G
Sbjct: 65  G 65


>gi|39939960|ref|XP_359517.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
 gi|145010459|gb|EDJ95115.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
          Length = 1808

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +  +G +VK+   GAFV F G   G + I ++S   +   ++  + G  V V ++  D
Sbjct: 649 VGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVD 708

Query: 679 -DRGKIKLSMKV 689
            +R ++ +S K 
Sbjct: 709 PERRRLVVSCKD 720



 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGL 646
            D     +  S  A                +  ++  G+V KV DFGAF+         GL
Sbjct: 1282 DKTLGHVQMSLKASAVDEDYKPLPGYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGL 1341

Query: 647  VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
             H ++++ + V   + + +EGD+V   +L  D  + K+   +K
Sbjct: 1342 CHRTEMADKPVKDATKLYREGDSVKAIILSVDAAKKKVSFGLK 1384



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++   +     E   I +G V  V D G FV   G    LV IS LS   +    +  + 
Sbjct: 1211 KDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRISDLSDAFLKDWKEHFQV 1270

Query: 667  GDTVWVKLLDFDDR-GKIKLSMK--VVDQN 693
               V  ++   D   G +++S+K   VD++
Sbjct: 1271 DQLVKGRVTSVDKTLGHVQMSLKASAVDED 1300



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
            G  V       G V    L+  R+       +EG  V  ++L  D  + +++L+ K
Sbjct: 574 SGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTFK 630



 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 602  EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
               +AR       +  E + +   +V KV D   F     +    V I  L+ +     +
Sbjct: 1112 SARSARPNEHMKWEELEKDTVMHARVTKVNDRQVFFQISDSVAAPVQIIDLNDDY-DHAN 1170

Query: 662  DV-VKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             +   + D V V ++  D +  K++LS + 
Sbjct: 1171 PLKYSKNDIVRVSVVSIDKNHKKLRLSARE 1200


>gi|126273449|ref|XP_001378624.1| PREDICTED: similar to KIAA0185 [Monodelphis domestica]
          Length = 1773

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           DG + +                 +    +   +  G V  +  +G FV F     GL   
Sbjct: 696 DGHIVLCRKPALISAVESGQDPKVFSEFQPGMLLTGFVKSIKAYGIFVQFPSGLSGLAPK 755

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           S LS + V   SD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 756 SALSDKFVTTISDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 798



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G +  + D G  V F     GLV   +L  + ++   +V   G  V V +L  + ++ ++
Sbjct: 547 GFISSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSEPEQERM 606

Query: 684 KLSMK 688
            LS +
Sbjct: 607 LLSFR 611



 Score = 41.8 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +  +I KG+V  +  +G  V       GLV    L+  ++       + 
Sbjct: 440 IEAPFLRYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLVPTLHLADVQIRNPQKKYRV 499

Query: 667 GDTVWVKLLDFDDRGK 682
            D V  ++L  D   K
Sbjct: 500 QDEVKCRVLMCDPENK 515


>gi|149040333|gb|EDL94371.1| programmed cell death protein 11 (predicted) [Rattus norvegicus]
          Length = 964

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + D+G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 697 EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 756

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 757 NVDESKQRMLLSLRLSD 773



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LS + +     V   G  V V +L+ +  + ++
Sbjct: 547 GVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS K++  +  K 
Sbjct: 607 LLSFKLLSGSEPKD 620



 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I KG+V+ +  FG  V       GLV    L+   +         GD V  ++L  
Sbjct: 451 KTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLC 510

Query: 678 DDRGK 682
           D   K
Sbjct: 511 DPEAK 515


>gi|299750699|ref|XP_001829767.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
 gi|298409029|gb|EAU91989.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
          Length = 238

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 75/211 (35%), Gaps = 33/211 (15%)

Query: 28  DGAVLATYGETVVLATVVYDRSLK---DGQDFFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+    +G +  LA+V     ++   +        V    R ++              P
Sbjct: 28  DGSARFGFGNSAALASVSGPIEVRLAAEQSSQATFEV--HVRPFSN------------VP 73

Query: 85  TENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQH---DLESSPHVVSMVAAS--AA 137
             +    + +I  ++ P  + +K  +   Q+++  +     + E      +M+ AS  A 
Sbjct: 74  ATDSKSQATVIRSALTPSLILTKNPRTLVQLVVQNLSSASTNTERDGLTAAMINASTLAL 133

Query: 138 LMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQ-----GSLDLFVSGTQDAVLM---V 188
           L    LP  G V    V    NG+++++P  +E +     G      +G+  +  +    
Sbjct: 134 LNAGSLPMRGVVCAVAVGRTSNGEFLVDPTAEEAKDITEGGCFSFMFAGSSASTCVWTNW 193

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
              +  + ++ +           + + +AI 
Sbjct: 194 RSTSGGVKQEHLESGKAMARTAAQRIYKAIK 224



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 28/232 (12%)

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
            +E  R +      L R  GS+ F  G++ A+  V+ G  E       L+  Q +     
Sbjct: 10  SNEQFRPLHIVYDGLNRVDGSARFGFGNSAALASVS-GPIEVR-----LAAEQSSQATFE 63

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDG--- 434
            +  P +      + A   +      + R A+ P L  T      +++V +   S     
Sbjct: 64  VHVRPFS-----NVPATDSKS--QATVIRSALTPSLILTKNPRTLVQLVVQNLSSASTNT 116

Query: 435 ---SSSMATVCGSSLALMDAG-VPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG--H 488
                + A +  S+LAL++AG +P+   V  +A+G   +G+    L D + +E       
Sbjct: 117 ERDGLTAAMINASTLALLNAGSLPMRGVVCAVAVGRTSNGE---FLVDPTAEEAKDITEG 173

Query: 489 MDFKVAGTDSGITAMQMD---MKIGGISENIMVMALQQAKRGRLHILNEMSK 537
             F      S  +           GG+ +  +      A+     I   +  
Sbjct: 174 GCFSFMFAGSSASTCVWTNWRSTSGGVKQEHLESGKAMARTAAQRIYKAIKT 225


>gi|291450180|ref|ZP_06589570.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|291353129|gb|EFE80031.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
          Length = 252

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
           G ++  ++ G  +      +        +R+        ++  G V  V  FG FVH  G
Sbjct: 51  GQEIEAEETGRWRGGQPHFSARACENPALRAFLLGCAPGQVVTGTVAGVHGFGVFVHVDG 110

Query: 642 ARD----GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNT 694
             +    G V +  L+   +   S  V+ G  +  +++  + R G+I LS+K + ++ 
Sbjct: 111 EPEGMCTGFVRVPDLTWGWIEHPSQAVEAGRRITAEVITSETRSGQIALSLKALQEDP 168



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           +  G VV+++ FG  V       GL+H+S+L     A    +V EG+ + VK+ + D +R
Sbjct: 179 VLTGTVVRILPFGVLVRLAPDVVGLLHLSELGGGPSATPGRLVAEGEPITVKVAEVDLER 238

Query: 681 GKIKL 685
            +++L
Sbjct: 239 HRVRL 243


>gi|301097567|ref|XP_002897878.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
 gi|262106626|gb|EEY64678.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
          Length = 1882

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 622  IYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSD-VVKEGDTVWVKLLDFDD 679
              KG + KV  +G FV        GL HIS+++ E+V +  D +  EGD V  K+L  +D
Sbjct: 1441 TVKGTITKVQTYGVFVRIEKTTISGLCHISEVADEKVTQPLDQIFSEGDYVKAKVLKVED 1500

Query: 680  RGKIKLSMK 688
            R ++   +K
Sbjct: 1501 R-RVSFGLK 1508



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I  G + K+ ++G  V F     GLV ++ L    +    +    G  V  ++   D +R
Sbjct: 541 IAHGFITKIGEYGVIVTFYNNVYGLVPMAVLQQAGIENLEEAYVPGQVVKARVTRCDANR 600

Query: 681 GKIKLS 686
            ++ LS
Sbjct: 601 KRLMLS 606



 Score = 38.0 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
              +     G VHIS +S +RV K       G ++  ++L F
Sbjct: 378 NAKWKAFAPGYVHISNVSDKRVDKLEKKFTVGSSIKCRVLGF 419


>gi|149914309|ref|ZP_01902840.1| S1 RNA binding domain protein [Roseobacter sp. AzwK-3b]
 gi|149811828|gb|EDM71661.1| S1 RNA binding domain protein [Roseobacter sp. AzwK-3b]
          Length = 773

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
            +G V  V  FGAFV     +DGLVH+SQL+   V    +VVK GD V V++++ D  R 
Sbjct: 653 LEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRVVEVDVARK 712

Query: 682 KIKLSMK 688
           +I LSM+
Sbjct: 713 RIGLSMR 719


>gi|24213346|ref|NP_710827.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45658772|ref|YP_002858.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194094|gb|AAN47845.1| 30S ribosomal protein S1 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602016|gb|AAS71495.1| 30S ribosomal protein S1 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 384

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 19/216 (8%)

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
            ++      D G       +    ++++++ +A +         ++E          +  
Sbjct: 70  ELEAYFLKEDHGDVHFTTCLSGDLLNKDLLEIAKKAEIPVLGQFVSEGDSGADVKIGEFS 129

Query: 548 EFTPRVEIMAIPPD-QIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
            F P      I P+ +   +IG   K +            I D G       S  +I   
Sbjct: 130 GFCPFS---QIDPELKKSGLIGKRLKFL------------IQDFGNRNKLVVSQKKISDR 174

Query: 607 REMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
            +  +      E+ +      +V  + +FG  V   G    LV IS+ + ++  +     
Sbjct: 175 AKEAKLGVLKQELKEGMFVTCKVKTIQNFGLIVEMDGGVTALVPISEATYKKNPELEKEF 234

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           + G T+  ++L  D +  K  L++K   ++     V
Sbjct: 235 QVGQTLRARVLRIDWENQKFALTVKDFLKDPWAQTV 270



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T   +   I KG +  +  FG FV      +GLV   +         S   K G
Sbjct: 263 KDPWAQTVPFKEGDIVKGTIDSLKPFGVFVKLDDHFNGLVPGRETGISNRVPLSQSFKPG 322

Query: 668 DTVWVKLLDFDDRGK-IKLSM---KVVDQ 692
           + V V +++ +   K I LS+   K + +
Sbjct: 323 EVVDVFVMEVNPEKKQISLSIQKAKEIQE 351


>gi|168036805|ref|XP_001770896.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677760|gb|EDQ64226.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1098

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 574 IRGIVEQTGAKVNI-DDDGTVKIASSSLAEIEAAREMIRSITDVP---EVNKIYKGQVVK 629
           +R +V +T   V +  D    ++  S        RE+      +     V  + K  V K
Sbjct: 880 LRALVGETAKVVVVAVDRERKQLRFSEKEAEGEGRELAEKKAQLMASLNVGDVVKCTVKK 939

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           V  FGAFV        L+HIS+LS  RV + S ++ +G  V VK
Sbjct: 940 VTSFGAFVEL-RGIPALIHISELSWNRVTEPSTILNDGVEVEVK 982


>gi|261824463|pdb|2KHI|A Chain A, Nmr Structure Of The Domain 4 Of The E. Coli Ribosomal
           Protein S1
          Length = 115

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675
           PE  K+  G+V  + D+G FV      +GLVH+S++    +    S VV  GD V V +L
Sbjct: 29  PEGTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVL 87

Query: 676 DFD-DRGKIKLSMKVVDQNTGK 696
           D D +R +I L +K    N  +
Sbjct: 88  DIDEERRRISLGLKQCKANPWQ 109


>gi|159037328|ref|YP_001536581.1| RNA-binding S1 domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157916163|gb|ABV97590.1| RNA binding S1 domain protein [Salinispora arenicola CNS-205]
          Length = 797

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
           I +G V  V  FGAFV     +DGLVH+S +S   V    +VVK GD V VK+LD D  R
Sbjct: 657 ILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRAFVRDPREVVKSGDVVKVKVLDVDVPR 716

Query: 681 GKIKLSMKVVDQNTGK 696
            +I L++++ D   G+
Sbjct: 717 KRISLTLRLNDTEAGR 732


>gi|33866272|ref|NP_897831.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus
           sp. WH 8102]
 gi|33639247|emb|CAE08255.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus
           sp. WH 8102]
          Length = 406

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 102/275 (37%), Gaps = 34/275 (12%)

Query: 444 SSLALMDAGVPIS---KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + LA +D   P+      V G  +GL  DG    I  DI G            +    G+
Sbjct: 119 AFLAALDENAPVGTTGDVVQGTVIGLESDG----IYVDIGGKAPGF----MPKSEAGLGV 170

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIMAI- 558
                +    G+   ++V   Q A          +    S +   +L +    V+++   
Sbjct: 171 ITNLGERFPKGLQVEVLVTREQNADGMVTISCRALELRKSWDKVKELEKHGKVVQVIVNG 230

Query: 559 --------PPDQIRNVIGMG----GKVIRGIVEQTGAKVNID-DDGTVKIASSSLAEIEA 605
                     + +R  I       G   + +V +T     I+ +  T K+  S      A
Sbjct: 231 FNRGGVTCDLEGLRGFIPRSQLQEGDNHQELVGKTLGVAFIEVNSETRKLVLSQKRAAVA 290

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           AR          EV ++ +G V  V  +G F+   G   GL+H S ++   +    +V  
Sbjct: 291 AR------FQELEVGQLVEGVVAAVKPYGLFIDL-GGISGLLHQSSITNGSLRSIREVFD 343

Query: 666 EGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           +GD V   + + D  RG+I L+  +++   G+ ++
Sbjct: 344 QGDRVQALITELDPGRGRIGLNTALLEGPPGELLI 378


>gi|317133623|ref|YP_004092937.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315471602|gb|ADU28206.1| RNA binding S1 domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 316

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            +   +V  +  FGAFV        L+ I  +S  R++   D    G  +   +  F++ 
Sbjct: 127 DVIDVRVTHLEPFGAFVDIGCGIPSLIPIDLISISRISHPRDRFHVGQDIKAVVKSFEEN 186

Query: 681 GKIKLSMKVV 690
            ++ LS K +
Sbjct: 187 RRVCLSHKEL 196


>gi|302755991|ref|XP_002961419.1| hypothetical protein SELMODRAFT_60716 [Selaginella moellendorffii]
 gi|300170078|gb|EFJ36679.1| hypothetical protein SELMODRAFT_60716 [Selaginella moellendorffii]
          Length = 877

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G V  +   G FV   G  +G +H +++S          +VK G  V VK+L   + G+
Sbjct: 164 TGVVKNLTRRGCFVELPGGEEGFMHANEISVAGENVPIETLVKVGQEVKVKVLRIIE-GR 222

Query: 683 IKLSMKV 689
           I L+MK 
Sbjct: 223 INLTMKE 229



 Score = 44.1 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +K+  G++  +M FGAFV      DGL+HIS+L    V    D
Sbjct: 34  DKVLTGRIKSIMTFGAFVDLGARVDGLLHISKLGEGFVKAVED 76


>gi|296414013|ref|XP_002836699.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630534|emb|CAZ80890.1| unnamed protein product [Tuber melanosporum]
          Length = 327

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC---GARD 644
           D +   K       + +  R  +  + + P + KIY G+V  + DFG FV      G  D
Sbjct: 171 DRERRGKHRYGGDEDDDFRRPPVPELDENPVLYKIYNGRVSGMKDFGVFVSLQNVKGKVD 230

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           GLVHIS +  +RV   +D++  G +V    +      +I LSMK 
Sbjct: 231 GLVHISAIRLDRVNHPADLLSRGQSVK-VKVVSVQGTRIGLSMKD 274


>gi|296241794|ref|YP_003649281.1| translation initiation factor 2 subunit alpha [Thermosphaera
           aggregans DSM 11486]
 gi|296094378|gb|ADG90329.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Thermosphaera aggregans DSM 11486]
          Length = 265

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M  +  ++P V     G V +V D+GA+V           +  S+++++ V    +VV+E
Sbjct: 1   MPMARQELPNVGDYVIGTVAEVFDYGAYVTLDEYNGLKAFLPWSEVASKWVRDLREVVRE 60

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
           G  + VK++  D R K + +S+K V  N  K
Sbjct: 61  GQKIVVKVIRVDRRKKEVDVSLKKVADNERK 91


>gi|148679539|gb|EDL11486.1| mCG3764 [Mus musculus]
          Length = 253

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 40/189 (21%)

Query: 309 DKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSG 368
           +       RD   +R + A+ GLL +  GS+    G T+ +  V+ G R+ E        
Sbjct: 23  EDDETPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGSGP 81

Query: 369 TQ---------RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
                      R   +  +   P +             +   G   + A+ P +      
Sbjct: 82  AGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYP 141

Query: 420 PYTLRIVSEITE--------------------------SDGSSSMATVCGSSLALMDAGV 453
              L + + + E                          S G        G ++ALM    
Sbjct: 142 RAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDSGGGLRPEPHPGITVALM---- 197

Query: 454 PISKPVAGI 462
           P+   VAG+
Sbjct: 198 PVLNQVAGL 206


>gi|124028479|ref|YP_001013799.1| translation initiation factor IF-2 subunit alpha [Hyperthermus
           butylicus DSM 5456]
 gi|166226220|sp|A2BN93|IF2A_HYPBU RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|123979173|gb|ABM81454.1| translation initiation factor 2 alpha [Hyperthermus butylicus DSM
           5456]
          Length = 267

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M     ++P+V ++    V +V D+GA++     G  +  +  S++++  V    DVVK 
Sbjct: 1   MPIQRKELPDVGELVVATVKEVYDYGAYLTLDEYGGLEAYLPWSEVASRWVRSIHDVVKP 60

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVV 690
           G  + VK++  + R K + +S+K V
Sbjct: 61  GQKIVVKVIRVNKRKKQVDVSLKRV 85


>gi|296004999|ref|XP_002808840.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
 gi|225632235|emb|CAX64117.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
          Length = 1176

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 572 KVIRGIVEQTGAKVNID----DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
             I+   E+   K+N D        V     +                   V  + +  +
Sbjct: 741 YKIKTEQEELEEKINEDLLLNKKIKVFCTDINKLNFSNLIYEQNEQLKNLNVYDVLEVDI 800

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS 686
           + +  +G  V +     GL+H+S++S ++V   +D  K  D +   +++ D D  +  +S
Sbjct: 801 IHISKYGLMVKYFDVV-GLIHVSEISKKKVDNLNDYFKINDKLKGVIVNIDYDNKRFSMS 859

Query: 687 MKVVDQNTGKPIV 699
            K+++++ GK I+
Sbjct: 860 TKILERD-GKNII 871


>gi|146304564|ref|YP_001191880.1| translation initiation factor IF-2 subunit alpha [Metallosphaera
           sedula DSM 5348]
 gi|145702814|gb|ABP95956.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Metallosphaera sedula DSM 5348]
          Length = 256

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           MI +   +P    I    V +V D+G++V     G     +  S++ST  V    DVVKE
Sbjct: 1   MIYNRYPLPREGDILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEISTRWVKNIRDVVKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  + VK++  D  +G + +S+K V+ +  +
Sbjct: 61  GRKIIVKVIRVDRKKGSVDVSLKKVNDDDRR 91


>gi|302817215|ref|XP_002990284.1| hypothetical protein SELMODRAFT_40704 [Selaginella moellendorffii]
 gi|300141993|gb|EFJ08699.1| hypothetical protein SELMODRAFT_40704 [Selaginella moellendorffii]
          Length = 863

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G V  +   G FV   G  +G +H +++S          +VK G  V VK+L   + G+
Sbjct: 164 TGVVKNLTRRGCFVELPGGEEGFMHANEISVAGENVPIETLVKVGQEVKVKVLRIIE-GR 222

Query: 683 IKLSMKV 689
           I L+MK 
Sbjct: 223 INLTMKE 229



 Score = 44.1 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           +K+  G++  +M FGAFV      DGL+HIS+L    V    D
Sbjct: 34  DKVLTGRIKSIMTFGAFVDLGARVDGLLHISKLGEGFVKAVED 76


>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 268

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 44/259 (16%)

Query: 296 EDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV--T 353
            ++    +R ++ +K  R+DGR     R I    G   +  G +    G+TQ +V V   
Sbjct: 9   HNLMKDYIRDLV-EKGQRVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKAD 67

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--- 410
           LG    E + D+     +  F+ +   LP A+      G P    I   R+  RAI    
Sbjct: 68  LG----EPFPDT---PDKGVFVSNAELLPVASPTFEP-GPPDEGAIELARVVDRAIRSAD 119

Query: 411 -----PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----------- 454
                 ++    +  Y + +   + + DG+   +    S +AL  + +P           
Sbjct: 120 AIDLGSLVILPGKLVYMIFLDMYVLDYDGNLEDSLTLASLIALGRSEIPEVELKENGEIE 179

Query: 455 ---------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
                    +      I    VK G    IL D + +E+ +      VA    G     +
Sbjct: 180 VKESKRKLELKDIP--INFSFVKIGSK--ILLDPTLEEESVSDASITVAINKDG-KVCSV 234

Query: 506 DMKIGGISENIMVMALQQA 524
             + G  +   ++  +  A
Sbjct: 235 QKRHGTFTVEEILNIVNVA 253


>gi|189425601|ref|YP_001952778.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
 gi|189421860|gb|ACD96258.1| RNA binding S1 domain protein [Geobacter lovleyi SZ]
          Length = 762

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I ++              A            +   I +G V  V  FGAFV     +DG
Sbjct: 615 DILEELKKPGRDPRQQFQTADFRDDIREISDLQEGMILQGVVTNVTAFGAFVDIGVHQDG 674

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQ 692
           LVH+S L+   +   +D V+ G  V VK+L  D  R +I LS+K  + 
Sbjct: 675 LVHVSHLANRFIKDPNDAVQVGQVVKVKVLSADPQRKRIALSIKESEP 722


>gi|115443785|ref|NP_001045672.1| Os02g0115600 [Oryza sativa Japonica Group]
 gi|41052593|dbj|BAD07935.1| heat shock factor protein hsf8-like [Oryza sativa Japonica Group]
 gi|41052819|dbj|BAD07710.1| heat shock factor protein hsf8-like [Oryza sativa Japonica Group]
 gi|113535203|dbj|BAF07586.1| Os02g0115600 [Oryza sativa Japonica Group]
 gi|215695198|dbj|BAG90389.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622041|gb|EEE56173.1| hypothetical protein OsJ_05113 [Oryza sativa Japonica Group]
          Length = 799

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 11/131 (8%)

Query: 565 NVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           + IG   +V   + ++   K+           S    E E   +  +S+     V  I +
Sbjct: 569 SFIGQRLRVSVVLADRKSKKIF---------FSMKPKESEELIQKKKSLMAKLNVGDIVE 619

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
             + + + FG FV   G    L+   ++S +     S   K G  V  K++  D +  +I
Sbjct: 620 CTIKRFVYFGIFVEVEG-VPALIQQWEVSWDETLDPSVSYKIGQVVDAKVIQLDYNNNRI 678

Query: 684 KLSMKVVDQNT 694
            LS+K V  N 
Sbjct: 679 FLSLKDVKPNP 689


>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
           13514]
          Length = 276

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 92/265 (34%), Gaps = 44/265 (16%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
             +   K R+DGR  +  R+I  + G+++   GS+    G T  I  V +G  +      
Sbjct: 21  KRLAASKNRVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQP----- 75

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV-------LPQTA 417
                     ++    LP A+     +G P    I   R+  R I          L    
Sbjct: 76  FPDAPDEGVLVVSAEVLPHASPYTE-VGPPDESAIELARVVDRGIRHCGYVDFKKLAVEG 134

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP--ISK------------------ 457
              Y L +   +   DG+   A    S  AL +  +P  +                    
Sbjct: 135 GKAYVLWVDLYVINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKLDRNNKSPLPLE 194

Query: 458 ----PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGIS 513
               PVA +++G + +    ++  D + +E     +D +V  T S    +     +G  +
Sbjct: 195 TSKVPVA-VSVGKIAN----VLFLDPNFEE--ELSLDGRVTFTISEDRIVAAQKTLGYFT 247

Query: 514 ENIMVMALQQAKRGRLHILNEMSKV 538
           +  +  AL  A +GR   L  +  +
Sbjct: 248 QPELEAALDLAIKGRDRYLEALKSI 272



 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 44/243 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           R ++++TG + + +DG+     G+T V+A V V          D   L V+ +   +A  
Sbjct: 39  REIEIKTGVV-KTADGSAEVKLGKTHVIAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASP 97

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---------LFSKCYKNETQVIINVMQHDL 122
               G       P E+ I ++R++DR IR                     V + V+  D 
Sbjct: 98  YTEVGP------PDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWVDLYVINDDG 151

Query: 123 E-SSPHVVSMVAA-------------SAALML-----SGLPFE---GPVVGAQVDYINGQ 160
                  ++ VAA             S A+ L     S LP E    PV    V  I   
Sbjct: 152 NLVDAANLASVAALKNTQLPAVVKDESGAVKLDRNNKSPLPLETSKVPV-AVSVGKIANV 210

Query: 161 YVLNPRLDEDQGSLD--LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
             L+P  +E + SLD  +  + ++D ++  +      ++  +  A+          +EA+
Sbjct: 211 LFLDPNFEE-ELSLDGRVTFTISEDRIVAAQKTLGYFTQPELEAALDLAIKGRDRYLEAL 269

Query: 219 SKL 221
             +
Sbjct: 270 KSI 272


>gi|160934075|ref|ZP_02081462.1| hypothetical protein CLOLEP_02938 [Clostridium leptum DSM 753]
 gi|156866748|gb|EDO60120.1| hypothetical protein CLOLEP_02938 [Clostridium leptum DSM 753]
          Length = 313

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 18/193 (9%)

Query: 508 KIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVI 567
                +      A   A   R   + E   V+ +S   L      +  + IP ++    I
Sbjct: 15  METPENRAAFQSASSLADACRDRQILEGRAVICDSSHNLVVDCGCMRGL-IPREE--GAI 71

Query: 568 GMGGKVIRGIVEQTGAKVNI---------DDDGTVKIASSSLAEIEAAREM-IRSITDVP 617
           GM    +R I   +     +         ++DG      S      AA+E+ ++      
Sbjct: 72  GMNDGSVRDIAVISRVNRPVCFLVTGFQKNEDGKTIALLSRR----AAQELCMKEYVSTL 127

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
               I   ++  +  FGAF         L+ I  +S  R+    +    G  +   +   
Sbjct: 128 VPGDIVNARITHLETFGAFADIGCGIVSLLPIDMISVSRIDHPRERFSVGMDITAVIKAI 187

Query: 678 DDRGKIKLSMKVV 690
           D+ G+I L+ K +
Sbjct: 188 DN-GRISLTHKEL 199


>gi|25136928|emb|CAD56698.1| exosome-associated protein 4 [Trypanosoma brucei]
          Length = 227

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 9/190 (4%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           +     R  + VR     + +L +++ S+    G T+ +  V       +Q +D   G+ 
Sbjct: 2   ERSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAV----HHPQQLIDEYRGS- 56

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R            A        A    E          +   +         + +V EI 
Sbjct: 57  RGRVACTVRRSSRAQKHELAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVVVEIL 116

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
             DG    A   G   AL   G  +    +     L+ DG    I++D S  E +     
Sbjct: 117 AEDGGLWDAIATGVCAALASGGFEMYDTFSACGAALLPDGS---IVTDPSATEWNTAKAT 173

Query: 491 -FKVAGTDSG 499
               A  +SG
Sbjct: 174 AVTCAMLNSG 183


>gi|156845672|ref|XP_001645726.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116393|gb|EDO17868.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 6/136 (4%)

Query: 558  IPPDQIRNVIGMG-GKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
            +P  ++ +       K  + +    G  ++ DD+  + +           +  +      
Sbjct: 1208 VPVSKLSDSYLKDWKKFYKPMQSVIGKVISCDDNSHILLTLRESEVNGELK--VLKGYSD 1265

Query: 617  PEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
             +V  I+ G +  V DFG FV         GL H ++++       S +   GD V   +
Sbjct: 1266 IKVGDIFNGNIKNVTDFGVFVKLDNTVNVSGLAHRTEIADTVPENLSSIFGVGDRVKAIV 1325

Query: 675  LDFD-DRGKIKLSMKV 689
            L  + ++ +I L +K 
Sbjct: 1326 LKTNPEKQQISLGLKA 1341



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
              G  V F G   G +  +++S   V +  + ++ G T+ VKLL  + +R +I
Sbjct: 622 KPNGCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKLLQVEKERSRI 675



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 579  EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
            E   AKV   D  T KI  S   E   A  M     +  +   + K  +  V + G FV+
Sbjct: 1142 EMVSAKVISIDRETKKINLSLQNE--KASNMKLKSHEDLKQKDVVKAIIKNVTEKGIFVY 1199

Query: 639  FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
               A +  V +S+LS   +       K   +V  K++  DD   I L+++ 
Sbjct: 1200 LSSALEAFVPVSKLSDSYLKDWKKFYKPMQSVIGKVISCDDNSHILLTLRE 1250



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV-- 664
            R       D   V+ I   +++KV D    +       G+  I+    +  +   D    
Sbjct: 1079 RSKSVKSIDDVNVDDILPARIIKVNDNYVLLDLGHKITGISFITDALNDFSSSLHDEYDD 1138

Query: 665  KEGDTVWVKLLDFD-DRGKIKLSM 687
            K  + V  K++  D +  KI LS+
Sbjct: 1139 KLNEMVSAKVISIDRETKKINLSL 1162


>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
          Length = 238

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 31/236 (13%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
             RDI  +  L+++  GS+    GDT  +V V +       + D+     +   M +   
Sbjct: 9   DFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPG--APFPDT---PNKGVLMTNAEL 63

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRA--------IHPVLPQTAQFPYTLRIVSEITES 432
           +P A+ E    G P    I   R+  R         +  +  +  +  + + I     ++
Sbjct: 64  VPLASPEFES-GPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTLDN 122

Query: 433 DGSSSMATVCGSSLALMDAGVP-------------ISKPVAGIAMGLVKDGDDFIILSDI 479
           DG+   A   G+ ++L++  +P             I      + +  +       +L D 
Sbjct: 123 DGNLVDAAALGAIMSLLNVTIPYEQYGLTGEDTLQIRDTPVAVTVVEI----GGNLLVDP 178

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           +  E+        V     G  +        G++E  +V   +        I  + 
Sbjct: 179 NVYEESAATSKLTVISNADGSISGLQKSGSSGLTEEKIVKMTEIGIEKAREIREKY 234



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 33/227 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +E   I ++++G+     G+TVVL  V     ++ G  F P T N          +
Sbjct: 11  RDIIVERDLI-KKAEGSTRVQIGDTVVLVGV----KVEPGAPF-PDTPNKGVLMTNAELV 64

Query: 74  P-GGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ----VIINVMQHDLES 124
           P          P EN I ++R++DR IR        K    E +    + I++   D + 
Sbjct: 65  PLASPEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTLDNDG 124

Query: 125 SPHVVSMVAASAALMLSGLPF--------------EGPVVGAQVDYINGQYVLNPR-LDE 169
           +    + + A  +L+   +P+              + PV    V  I G  +++P   +E
Sbjct: 125 NLVDAAALGAIMSLLNVTIPYEQYGLTGEDTLQIRDTPV-AVTVVEIGGNLLVDPNVYEE 183

Query: 170 DQGSLDLFVSGTQDAVL--MVELEANQLSEDVVLDAIIFGHNECKPV 214
              +  L V    D  +  + +  ++ L+E+ ++     G  + + +
Sbjct: 184 SAATSKLTVISNADGSISGLQKSGSSGLTEEKIVKMTEIGIEKAREI 230


>gi|297739376|emb|CBI29366.3| unnamed protein product [Vitis vinifera]
          Length = 435

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           E         +   + +G V K+  +GA +      R GL+HIS ++  RV   SD++  
Sbjct: 282 EKDAWEKSHLQEGTLLEGTVKKIFPYGAQIMIGESNRSGLLHISNITRARVTSVSDLLTV 341

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
            + V V ++      KI LS+  ++   G
Sbjct: 342 DEKVKVMVVKSMFPNKIALSIADLESEPG 370


>gi|300120808|emb|CBK21050.2| unnamed protein product [Blastocystis hominis]
          Length = 245

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 24/128 (18%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-R 643
           +++++ G     ++        ++ +     +PE+N I+K  +   + FG+F        
Sbjct: 98  IDLNESGYQSSRANPRE-----KDSLLKKMRIPEINNIHKAVIKSNLAFGSFARIPEYAF 152

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-------------KIKLSMKVV 690
           DGL++ S    +  A      +EG  VWVK+L   +               ++ LSMK  
Sbjct: 153 DGLIYTSNYIPDHPAP-----REGQEVWVKVLRVFESENKVKLVMGCGFFDRMSLSMKEC 207

Query: 691 DQNTGKPI 698
           +Q TGK +
Sbjct: 208 NQQTGKDL 215


>gi|15921175|ref|NP_376844.1| translation initiation factor IF-2 subunit alpha [Sulfolobus
           tokodaii str. 7]
 gi|20532122|sp|Q973G0|IF2A_SULTO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|15621960|dbj|BAB65953.1| 263aa long hypothetical translation initiation factor 2 alpha
           subunit [Sulfolobus tokodaii str. 7]
          Length = 263

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           MI +   +P   +I    V ++ D+G++V     G     +  S++S+  V    DV+KE
Sbjct: 1   MIYNKNPIPTEGEILIATVKQIFDYGSYVTLDEYGNLQAFLPWSEISSRWVKNIRDVIKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
           G  + VK++  D R G I +S+K V ++  +
Sbjct: 61  GRKIVVKVIRVDKRKGTIDVSLKKVTEDEKR 91


>gi|170016776|ref|YP_001727695.1| RNA-binding protein [Leuconostoc citreum KM20]
 gi|169803633|gb|ACA82251.1| Predicted RNA binding protein (contains ribosomal protein S1
           domain) [Leuconostoc citreum KM20]
          Length = 126

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G+V  +  +GAFV       GL+HIS+  +  V      ++ G  V V +LD +    KI
Sbjct: 12  GRVTGIQPYGAFVLLDDHTQGLIHISECKSGIVHDLKHELRIGKPVVVTVLDIEQYNKKI 71

Query: 684 KLSMKVVD 691
            LS++  D
Sbjct: 72  SLSLRQED 79


>gi|332022965|gb|EGI63231.1| S1 RNA-binding domain-containing protein 1 [Acromyrmex echinatior]
          Length = 878

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  I  G V  V  FGAFV     ++GL+H+S++  +        +  G  V VK++D +
Sbjct: 815 VGTILSGVVRNVTHFGAFVDVGVGKEGLIHVSRMKKD--------LHIGQRVEVKVVDIE 866

Query: 679 -DRGKIKLSM 687
             R +I L +
Sbjct: 867 LARQRIGLEL 876


>gi|291543017|emb|CBL16127.1| Ribosomal protein S1 [Ruminococcus bromii L2-63]
          Length = 308

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I +D   K       E +A R+ + +         I   ++  + +FGAF         
Sbjct: 93  DITEDENGKPIVMLSRE-KAQRKCLDAYISRLRCGDIVPARITHLENFGAFADIGCGIVA 151

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           L+ I  +S  R+   ++    G  +   +    + G+I LS K +
Sbjct: 152 LMPIDTISVSRIEHPAERFTVGMDIKAVIKSV-ENGRISLSHKEL 195


>gi|193216985|ref|YP_002000227.1| transcription accessory protein Tex [Mycoplasma arthritidis
           158L3-1]
 gi|193002308|gb|ACF07523.1| transcription accessory protein Tex [Mycoplasma arthritidis
           158L3-1]
          Length = 717

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE---RVAKTSDVVKEGDT 669
             D  E+ K Y GQV+ V DFGAF      +  LVHIS +  +    +   S+++  G+ 
Sbjct: 636 TVDDLEIGKRYTGQVINVTDFGAFFFLGIKQSALVHISNMKKDDESFIKHPSEILNVGEN 695

Query: 670 VWVKLLDFD-DRGKIK 684
             ++++  D +R +I+
Sbjct: 696 WTIEIISIDKERERIQ 711


>gi|312216688|emb|CBX96638.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans]
          Length = 1787

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 581  TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            TG  ++   D       S    I  A           +  +I    V  V DFG F+   
Sbjct: 1270 TGKVISNKPDQR-NPQLSLKTSIIQADYSEPIEFSNLKAGQIVTATVRHVEDFGVFLVVA 1328

Query: 641  G--ARDGLVHISQLSTERV--AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                  GL H+SQL+   V   K  ++ K+GD V  K+L  D +  KI  ++K
Sbjct: 1329 NSNNVSGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLKVDSNTRKISFTLK 1381



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV +++      +A    +    +  +  +   G V  ++    F+       G V  SQ
Sbjct: 797 TVTVSNKPTLRKDAQASKLAISVEDLQAGETVHGFVRGILPDKVFIELGNGISGPVFKSQ 856

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           L+ E ++  +  +++  +V V++   D  +G   LSMK
Sbjct: 857 LTEEMLSAPNFGLRKDQSVTVRVSHVDPAKGFFWLSMK 894



 Score = 38.0 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G +  V   GA V F G     + ++++S   +   +     G  V V+ +  +   +
Sbjct: 647 GIIANVRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEER 704


>gi|170085507|ref|XP_001873977.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651529|gb|EDR15769.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1468

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         EV ++ KG + K+ D G FV    + DG+V  +  +   +       K 
Sbjct: 518 IEQKFLQVSDVEVGEVIKGTIKKLTDSGLFVSLSRSIDGVVWPNHYADITLKHPEKRFKP 577

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           G  +  K+L  D  R +I L+ K    ++  PI+
Sbjct: 578 GAGIKCKVLAVDVYRKRISLTAKKTLLDSNLPIL 611



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 589  DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLV 647
            D  T K+  +  +   + R          +V +   G V ++ D+G F++   ++ +GL 
Sbjct: 953  DLQTRKVEMTLKSGDLSTRNGSSVGLADLKVGQKVDGLVKRIEDYGLFINIDRSKLNGLC 1012

Query: 648  HISQLSTERVAKTS---DVVKEGDTVWVKLLDFDDRGKIKLSMK 688
            H SQLS  + A  S   +   EGD V   ++  D + +I LS+K
Sbjct: 1013 HKSQLSDSQGAGVSFALNSFHEGDRVKAVIIGID-KARISLSLK 1055



 Score = 43.7 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
           +       +   +          V    +G +  V D G FV      D  V I +L  +
Sbjct: 871 SKMYPESTKKIVDQEIIHIFDIHVGDTVRGSIKSVADHGLFVTIGRDIDARVQIRELFDD 930

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
            V       +E   V   +L  D    K+++++K  D +T
Sbjct: 931 FVEDWKARFQEKQIVKGLILSVDLQTRKVEMTLKSGDLST 970


>gi|134298988|ref|YP_001112484.1| RNA-binding S1 domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134051688|gb|ABO49659.1| RNA binding S1 domain protein [Desulfotomaculum reducens MI-1]
          Length = 724

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 16/142 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSIT 614
            +  ++    +  G   +R I+           DG ++       ++     R  I  I 
Sbjct: 595 QLDMEKTAERLETGVPTLRDII-----------DGLLRPGRDPREDLPGPLFRSNILKIE 643

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D+    ++ KG V  V+DFG FV      DGLVH S+++  R     D+V  GD + V +
Sbjct: 644 DLQAGMEL-KGTVRNVVDFGVFVDVGLKNDGLVHRSEMTDRRFRHPLDIVSVGDVINVWV 702

Query: 675 LDFD-DRGKIKLSMKV-VDQNT 694
           L  D +RG++ L+MK  + QN 
Sbjct: 703 LAVDIERGRVSLTMKERLPQNP 724


>gi|261335123|emb|CBH18117.1| exosome-associated protein 4, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 232

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 17/194 (8%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           +     R  + VR     + +L +++ S+    G T+ +  V       +Q +D   G+ 
Sbjct: 7   ERSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAV----HHPQQLIDEYRGS- 61

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLP----QTAQFPYTLRIV 426
           R            A     + G   R ++   +    A+  V+             + +V
Sbjct: 62  RGRVACTVRRSSRA----QKHGLAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVV 117

Query: 427 SEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHL 486
            EI   DG    A   G   AL   G  +    +     L+ DG    I++D S  E + 
Sbjct: 118 VEILAEDGGLWDAIATGVCAALASGGFEMYDTFSACGAALLPDGS---IVTDPSATEWNT 174

Query: 487 GHMD-FKVAGTDSG 499
                   A  +SG
Sbjct: 175 AKATAVTCAMLNSG 188


>gi|260466645|ref|ZP_05812833.1| RNA binding S1 domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029651|gb|EEW30939.1| RNA binding S1 domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 773

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAA----REMIRSITDVPEVNKI--------YKGQVVK 629
             +V +D+   +      LAE+E      R   ++ T    V+ I         +G V  
Sbjct: 603 DPRVFVDERFGLPTVRDILAELEKPGRDPRPGFKTATFAEGVDDIKDLKPGMLLEGTVTN 662

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           V  FGAF+     +DGLVH+SQL+   +    +VVK GD V V+++D D  R +I LSM+
Sbjct: 663 VAAFGAFIDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVRVVDVDIKRKRIALSMR 722


>gi|302845196|ref|XP_002954137.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
 gi|300260636|gb|EFJ44854.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
          Length = 2192

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 621  KIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            ++  G+V +V  FG FV   G     GL HIS+L+   V   + V K    V   +   D
Sbjct: 1568 QLVSGRVRRVERFGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLVRAVVTKVD 1627

Query: 679  -DRGKIKLSMK 688
             +  ++ LSMK
Sbjct: 1628 VEASRLSLSMK 1638



 Score = 44.5 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +V     G V +    G F+     RDG + +  LS   +   +     G  +  ++L  
Sbjct: 1474 KVGATVTGYVKRCDAKGLFLALDRFRDGHIKLVNLSDGFIEDPAAAFPAGMQLEARVLRV 1533

Query: 678  DDRGKIKLSMKVVDQNT 694
             + G+I+L+++   + T
Sbjct: 1534 GEGGRIELTLRSATRQT 1550


>gi|297464489|ref|XP_001252893.3| PREDICTED: programmed cell death 11-like [Bos taurus]
          Length = 1301

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + LS + V  TSD   EG TV  K+ 
Sbjct: 723 EIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVT 782

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 783 NVDEEKQRMLLSLRLSD 799



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 534 EMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           +   ++ +   Q+    P + +  I    P++  +V    G  ++  V     K      
Sbjct: 464 KPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHV----GDEVKCRVLLCDPK------ 513

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
              K+  +    +  ++    +  D  +      G +++V D+G  V F     GLV   
Sbjct: 514 -AKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRH 572

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           +LS E V     V   G  V V +L+ +  + ++ LS +++
Sbjct: 573 ELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   + KG+V+ +   G  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D + K
Sbjct: 508 LLCDPKAK 515


>gi|84998004|ref|XP_953723.1| 3' exonuclease, exosome component [Theileria annulata]
 gi|65304720|emb|CAI73045.1| 3' exonuclease, exosome component, putative [Theileria annulata]
          Length = 254

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 83/256 (32%), Gaps = 28/256 (10%)

Query: 318 DSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMH 377
               +R +  ++       GS +   G+T A  +V L  +   +   +  G    +   +
Sbjct: 12  SFNELRPLEIKMSTSSTFSGSCIINLGNTIAKCLVNL-PKISTKKASTEYGQFTLELTSN 70

Query: 378 YNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS 437
           Y F      E  +                      +         +     ++  DG   
Sbjct: 71  YLFHTPKYLETLKSH------------IIETFERHILLQNYPSQIIEAYIIVSNDDGGLL 118

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD-DFIILSDISGDEDHLGH-------- 488
            A + G  LAL+D G+ +   ++  ++ + KD D + +   D +  E             
Sbjct: 119 PALIMGMCLALIDCGIQVYDVISACSVCIFKDHDGNLVTGLDFNKTELSYYQSKDPYFTV 178

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES---RLQ 545
           ++         +  ++     G  S   +  AL+ A+     I  E+ K+L E+   R +
Sbjct: 179 VNLGYCCNLRNVAFLE---SKGNYSAEHIGKALEVAEVACNLISGELFKILKENHTWRCE 235

Query: 546 LGEFTPRVEIMAIPPD 561
              F  + E +    D
Sbjct: 236 NSNFALQTEYIQPDVD 251


>gi|25152573|ref|NP_497279.2| EXOSome (multiexonuclease complex) component family member
           (exos-4.2) [Caenorhabditis elegans]
 gi|16950528|gb|AAL32260.1|AC006815_1 Arp2/3 complex component protein 4 [Caenorhabditis elegans]
          Length = 241

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 23/230 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +   R +  + G+     GS     G+T+ +  +T G        D      R    +
Sbjct: 32  RANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQIT-GPDG-----DGKWEEDRAKITI 85

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
               +  +            +   +      A+  V+  +      + I   +   DG  
Sbjct: 86  ELKGIEDSV-----------KVAEYRAQLASAVSAVIFASKYPGKVIEIEITVLSDDGGV 134

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD--ISGDEDHLGHMDFKVA 494
               +   +LA+  +G+     +A + + +  DG+    L+D   S  E  +G + F   
Sbjct: 135 LSTALSAVTLAISHSGIENMGLMASVHVAMNSDGE---CLTDPSTSESEGAIGGVTFAFV 191

Query: 495 GTDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
                 T + +  +I    + +++  A Q+A      I   +   + E +
Sbjct: 192 PNLGQTTCVDIYGRIPLKSTSSLLEFAKQRACALVPTIHKAIVNSVRERK 241



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 23/165 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAV 70
           RPL ++ G    Q DG+  A +G T VLA +         ++ +    + +   E +  V
Sbjct: 38  RPLCVKCGVFGAQ-DGSGYAEFGNTRVLAQITGPDGDGKWEEDRAKITIELKGIEDSVKV 96

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
            +                 L S +        +        ++ I V+  D        +
Sbjct: 97  AEY-------------RAQLASAVSAVIFASKYPGKV---IEIEITVLSDDGGVLS--TA 138

Query: 131 MVAASAALMLSGLPFEGPVVGAQVDY-INGQYVLNPRLDEDQGSL 174
           + A + A+  SG+   G +    V    +G+ + +P   E +G++
Sbjct: 139 LSAVTLAISHSGIENMGLMASVHVAMNSDGECLTDPSTSESEGAI 183


>gi|158186708|ref|NP_001101074.2| programmed cell death protein 11 [Rattus norvegicus]
          Length = 1876

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + D+G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 725 EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 785 NVDESKQRMLLSLRLSD 801



 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LS + +     V   G  V V +L+ +  + ++
Sbjct: 547 GVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS K++  +  K 
Sbjct: 607 LLSFKLLSGSEPKD 620



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   I KG+V+ +  FG  V       GLV    L+   +         GD V  ++L  
Sbjct: 451 KTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLC 510

Query: 678 DDRGK 682
           D   K
Sbjct: 511 DPEAK 515


>gi|242088619|ref|XP_002440142.1| hypothetical protein SORBIDRAFT_09g026760 [Sorghum bicolor]
 gi|241945427|gb|EES18572.1| hypothetical protein SORBIDRAFT_09g026760 [Sorghum bicolor]
          Length = 496

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 103/287 (35%), Gaps = 42/287 (14%)

Query: 429 ITESDGSSSMATV-CGSSLALMDAGVPISKPVAGIAMGLVK-------------DGDDFI 474
           +  SDG +    +  G  LALM A    S PV G   G +              +G   +
Sbjct: 159 VVRSDGRTLDVDIGSGGELALMLAKE--SAPVPGEEFGFLACDVASERATEFAAEGRVGV 216

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE-----NIMVMALQQAKRGRL 529
           ++  +S  E           G   G   ++      GI +       +    Q     ++
Sbjct: 217 VIRQVSAGEGDE-EATVGRNGKAKGARVLRA-GSEDGIDQIYGVLKCVEKIKQLNVPIKV 274

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I    +  L      L  F P+ E+M   P    ++    G+ +R         +   D
Sbjct: 275 KIYEWNASGLLSRIEGLRAFLPKPEMMT-RPRNFTDLKNKVGQEMR-------VCITRID 326

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVH 648
            G  ++  S             ++  + E   + +G V K+  +GA +      R GL+H
Sbjct: 327 QGNNELIISEKEA--------WAVAYLREG-TLLQGTVRKLFPYGAQIRIGETNRGGLLH 377

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           IS ++   +   +DV+K GDTV   ++      +I LS K ++   G
Sbjct: 378 ISNMTNGELRSVADVLKVGDTVKALVIKSTPD-RIALSTKELESEPG 423


>gi|328767961|gb|EGF78009.1| hypothetical protein BATDEDRAFT_13567 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1670

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%)

Query: 598 SSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV 657
           +    +  ++    +     +  +I  G +  V +FG  V F      +V I +LS  R+
Sbjct: 527 THKKSLMESKLPTITSYTEAQPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRM 586

Query: 658 AKTSDVVKEGDTVWVKLLDFD 678
               D  K G  +  +++  D
Sbjct: 587 DTPQDHFKIGQAIKCRVVSVD 607



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 624  KGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG- 681
            +G + ++ D+G F+    +   GL H+ +++   V     +   GD+V   +L  + +  
Sbjct: 1220 EGVIRRIEDYGLFIVLKNSELCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQ 1279

Query: 682  KIKLSMK 688
            +I LS+K
Sbjct: 1280 QISLSIK 1286



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 572  KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
              IR +V+    +++ ++   +   S   +  +   +         +   I +G +  + 
Sbjct: 1081 YTIRQLVQAVVVRIDTEN--NLIHCSLRKSAFKPDTKFPIFPFSSFQKGSIVQGYIQSIS 1138

Query: 632  DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            + G FV       G V + +LS   V       K G  V  +++  + +  +I+LS K
Sbjct: 1139 EKGCFVGLTNDIYGRVKMCELSDSFVVDWKSAFKPGMLVKGRIISINTNSKQIELSFK 1196



 Score = 41.4 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            KGQ+ ++   G  V    + +G    +  S  ++A+   + KEG TV   +L  +   K
Sbjct: 463 VKGQIRRITPSGVVVSVTDSINGFCPSNHFSDVKIARPEKLFKEGATVAFHVLSVNSADK 522



 Score = 38.7 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           +NID  G   I        +  ++           +++  G V  +     FV F G   
Sbjct: 696 INIDKYGKPLITRKHSLIFQVQQDNGVRKASDMINDQVCFGFVRNIYGKLCFVEFTGGVV 755

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVW 671
           G V +  +S   V+  S+ ++ G +V 
Sbjct: 756 GAVSLQNISDNFVSSVSEHLQIGQSVT 782



 Score = 37.6 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 619  VNKIYKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V +   G V K+    G  +         VHI+ L+ E     +D+      V   ++  
Sbjct: 1035 VGQKVVGYVAKIDPLKGINIRIGSHIIARVHITDLADEFNESPTDIYTIRQLVQAVVVRI 1094

Query: 678  D-DRGKIKLSMK 688
            D +   I  S++
Sbjct: 1095 DTENNLIHCSLR 1106


>gi|317969606|ref|ZP_07970996.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0205]
          Length = 448

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 97/257 (37%), Gaps = 31/257 (12%)

Query: 459 VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMV 518
           V G  +G+  DG    +  DI G     G M  K      G+     +    G++  ++V
Sbjct: 179 VTGTVIGMESDG----VYVDIGG--KAPGFMPKKECAL--GVITNLKERFPKGLTVEVLV 230

Query: 519 MALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIV 578
              Q A    +  ++  +  L +S  ++       +++ +  +   +    GG       
Sbjct: 231 TREQNADG--MVTISARALALRQSWEKVRALEKEGKVIQVKVNGFNH----GGITCDVEG 284

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP---------------EVNKIY 623
            +     +   +G    A        A  E+      +                EV ++ 
Sbjct: 285 LRGFVPRSQLQEGENHEALVGKTLGVAFLEVNPDTRKLVLSEKKAATAALFQNLEVGQLV 344

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
           +GQVV +  +G FV   G   GL+H S ++  ++    +V  +GD V   + + D  RG+
Sbjct: 345 EGQVVAIKPYGLFVDL-GGISGLLHHSVITGGQMRDLREVFGQGDRVKALITELDPGRGR 403

Query: 683 IKLSMKVVDQNTGKPIV 699
           I L+  +++   G+ ++
Sbjct: 404 IALNTALLEGQPGELLI 420


>gi|241651518|ref|XP_002411275.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503905|gb|EEC13399.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 765

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV +   G+V     FGAFV     +DGL+H SQ++  RV         GD V V ++
Sbjct: 696 EIEVGQELTGKVKNCTQFGAFVDIGVGKDGLIHCSQMNGHRVN-------LGDRVTVLVV 748

Query: 676 DFDD-RGKIKL 685
           + +  RG+I L
Sbjct: 749 NLERSRGRIGL 759


>gi|302776682|ref|XP_002971492.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
 gi|300160624|gb|EFJ27241.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
          Length = 883

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-------ARDGL 646
            ++      + A      S        +I  G++  +  FG F+           A   L
Sbjct: 227 PLSGHIEMSLAATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCL 286

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
            H+S++S + +   S + K G    VK+L  D +  +I L MK 
Sbjct: 287 CHVSEVSYDFIQDLSTLYKVGQWAQVKILKVDVETKRISLGMKA 330


>gi|73998783|ref|XP_535003.2| PREDICTED: similar to RRP5 protein homolog (Programmed cell death
           protein 11) [Canis familiaris]
          Length = 2113

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 2/180 (1%)

Query: 512 ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGG 571
           +  +I+     +    +   L + + +  E    L +   ++  + IPP  + +++    
Sbjct: 675 LRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGL-IPPMHLADILIKNP 733

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           +    I ++   +V + D    K+  +    +  ++    +     +      G +++V 
Sbjct: 734 EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQTHGFILRVK 793

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           D+G  V F     GLV   +LS E V     V   G  V V +L+ +  + ++ LS K++
Sbjct: 794 DYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLL 853



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590  DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
            +G V +                          +  G V  + D+G FV F     GL   
Sbjct: 937  EGRVLLCRKPALVSTVEGGQDPKNFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPK 996

Query: 650  SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 997  AIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 1039


>gi|332796933|ref|YP_004458433.1| translation initiation factor 2 subunit alpha [Acidianus hospitalis
           W1]
 gi|332694668|gb|AEE94135.1| translation initiation factor 2, alpha subunit [Acidianus
           hospitalis W1]
          Length = 262

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           MI +   +P    I    V +V D+G++V     G     +  S++ST  V    DV+KE
Sbjct: 1   MIYNKHPLPREGDILIATVKQVFDYGSYVTLDEYGNLQAFLPWSEISTRWVKNIRDVIKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           G  + VK++  D  +G + +S+K V+ +  +
Sbjct: 61  GRKIVVKVIRVDRKKGTVDVSLKKVNDDERR 91


>gi|168053672|ref|XP_001779259.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669358|gb|EDQ55947.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 16/167 (9%)

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589
            I++     +      L  F P +    IPPD        G      +  +    ++   
Sbjct: 373 EIVDYGKAGVIARVEGLRAFLP-LTEFVIPPD-----TSKGESHKDYVGRKLWVCISFAR 426

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVH 648
           +    I  S         E    I    ++  ++ G V K++++GA+V        G++H
Sbjct: 427 EIRGNIVIS---------EKDAWIQRNLKLGSLHDGTVTKIVNYGAYVQINRTNIGGIIH 477

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           IS +ST R+ + S+V+K GD V +  ++    GK+  S  +++   G
Sbjct: 478 ISNMSTARINRVSNVLKVGDQVKMIAVECPTPGKLSFSTALLEFEPG 524


>gi|307150169|ref|YP_003885553.1| Tex-like protein protein-like protein [Cyanothece sp. PCC 7822]
 gi|306980397|gb|ADN12278.1| Tex-like protein protein-like protein [Cyanothece sp. PCC 7822]
          Length = 718

 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           +E I  I+D+ E  ++ +G V  V++FGAFV     +DGLVHISQL+   V+  + VVK 
Sbjct: 634 KEGIMEISDLKEGMEL-EGIVTNVVNFGAFVDVGVHQDGLVHISQLADHFVSDPNQVVKV 692

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKV 689
           G  V V++++ +++  +I LSMK 
Sbjct: 693 GQVVKVRVMEVNEKLKRIGLSMKA 716


>gi|78185204|ref|YP_377639.1| RNA binding S1 [Synechococcus sp. CC9902]
 gi|78169498|gb|ABB26595.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
          Length = 412

 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           + GT K+  S      AAR          EV ++ +G V  V  +G F+   G   GL+H
Sbjct: 280 NSGTRKLVLSEKRAATAAR------FQELEVGQLVEGLVASVKPYGLFIDL-GGISGLLH 332

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            S ++   +    +V  +GD V   + D D  RG+I L+  +++   G+ ++
Sbjct: 333 QSSITNGSLRSIREVFDQGDRVSALITDLDPGRGRIGLNTALLEGPPGELLI 384


>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
 gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
          Length = 273

 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 21/229 (9%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R +   R +  + G+     GS     G+T+ +  +T G   D        G        
Sbjct: 64  RSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQIT-GPEGD--------GKWEE---- 110

Query: 377 HYNFLPCATGEVSRMGAPSRREI-GHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
                  A   ++  G  +  ++         ++  V+         + I   +   DG 
Sbjct: 111 -----AYAKVTITLKGVENETKVAELRADMTSSLSAVIFVNKYPGKVIDIEVTVLSDDGG 165

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
                +   +LAL  +G+      A   + L ++GD +I     S  ED +G + F    
Sbjct: 166 VLSTAITAVTLALAHSGIEHMGLTASAHVTLRQNGD-YITDPSTSEAEDAIGGVTFAFVP 224

Query: 496 TDSGITAMQMDMKIG-GISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
                T + +  +I    +  ++  A Q+A      I   +   + E +
Sbjct: 225 NLGQTTCVNLYGRIPLKATSPLLEFARQRAIALVPAIHKAVVNSVKERK 273



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 23/165 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAV 70
           RPL ++ G    Q DG+  A +G T VLA +         ++      +T+   E    V
Sbjct: 70  RPLCVKCGVFGAQ-DGSGYAEFGNTRVLAQITGPEGDGKWEEAYAKVTITLKGVENETKV 128

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
            ++            +    +S +I        +K       + + V+  D        +
Sbjct: 129 AELRA----------DMTSSLSAVI------FVNKYPGKVIDIEVTVLSDDGGVLS--TA 170

Query: 131 MVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGSL 174
           + A + AL  SG+   G    A V    NG Y+ +P   E + ++
Sbjct: 171 ITAVTLALAHSGIEHMGLTASAHVTLRQNGDYITDPSTSEAEDAI 215


>gi|37362654|ref|NP_011609.2| Rrp46p [Saccharomyces cerevisiae S288c]
 gi|118595829|sp|P53256|RRP46_YEAST RecName: Full=Exosome complex component RRP46; AltName:
           Full=Ribosomal RNA-processing protein 46
 gi|151943372|gb|EDN61685.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
 gi|190406885|gb|EDV10152.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
 gi|207345132|gb|EDZ72051.1| YGR095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269404|gb|EEU04701.1| Rrp46p [Saccharomyces cerevisiae JAY291]
 gi|259146598|emb|CAY79855.1| Rrp46p [Saccharomyces cerevisiae EC1118]
 gi|285812288|tpg|DAA08188.1| TPA: Rrp46p [Saccharomyces cerevisiae S288c]
 gi|323348611|gb|EGA82855.1| Rrp46p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355041|gb|EGA86872.1| Rrp46p [Saccharomyces cerevisiae VL3]
          Length = 223

 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 22/226 (9%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           + A++G+L    GSS F+  DT+ I  VT G  E +   +  +       +         
Sbjct: 3   VQAEIGILDHVDGSSEFVSQDTKVICSVT-GPIEPKARQELPTQLALEIIV--------- 52

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS-------S 437
                  G  + RE       R  + P++ +        +I  +I ES            
Sbjct: 53  ---RPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLREL 109

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
              +  + LAL+DAG+ ++   A I + ++KD  D I+       +  L      +   +
Sbjct: 110 SCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVN 169

Query: 498 SG--ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
            G  +  + +    G  +E+ +   L+  ++    ++  + +++ +
Sbjct: 170 GGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQD 215



 Score = 46.8 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 74/213 (34%), Gaps = 33/213 (15%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQD---FFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+      +T V+ +V      K  Q+      L +  +                +   
Sbjct: 14  DGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPA--------------KGVA 59

Query: 85  TENEILISRMIDRSIRPLFSKCY--KNETQVIINVMQHDLESSPHVV-----SMVAASAA 137
           T  E ++   +   + PL ++    +   Q+   +++   + +   +      + AA  A
Sbjct: 60  TTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLA 119

Query: 138 LMLSGLPFEGPVVGAQVDYING--QYVLNPRLDEDQGS-------LDLFVSGTQDAVLMV 188
           L+ +G+          +  I      +++P  ++ + S       L+    G     +++
Sbjct: 120 LVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVNGGKVVKNVLL 179

Query: 189 ELEANQLSEDVVLDAIIFGHNECKPVIEAISKL 221
                  +ED +   +  G  +C+ ++  I ++
Sbjct: 180 LDSNGDFNEDQLFSLLELGEQKCQELVTNIRRI 212


>gi|332798167|ref|YP_004459666.1| Tex-like protein [Tepidanaerobacter sp. Re1]
 gi|332695902|gb|AEE90359.1| Tex-like protein [Tepidanaerobacter sp. Re1]
          Length = 705

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA----AREMIRSITDV 616
           ++I  +  +    I+   E   A++  + D  +      L+E++      RE + +    
Sbjct: 563 EKIMKLYTLDELKIKIFSENEIAQMASNLDIGIPTLKDILSELKKPGRDPREELPAPIFR 622

Query: 617 PEVNKI--------YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
            +V +I          G V  + DFGAF+     +DGL HIS+LS   V    DVV  GD
Sbjct: 623 TDVLEISDLKPGMALMGSVRNITDFGAFIDIGVHQDGLCHISELSEGFVRSPFDVVSVGD 682

Query: 669 TVWVKLLDFD-DRGKIKLSMKVV 690
            V VK+L  D +R +I L+MK V
Sbjct: 683 VVKVKVLSVDAERNRISLTMKGV 705


>gi|123965829|ref|YP_001010910.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200195|gb|ABM71803.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9515]
          Length = 408

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ +G+V+ +  +G FV   GA  GL+H S ++   +    ++ +EG+ +   + + 
Sbjct: 297 KLGQLIEGEVLGIKPYGFFVDLGGA-SGLLHQSSITNGSIRNLREIFEEGELIKALITEI 355

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +RG+I L+  +++ + G+ IV
Sbjct: 356 DLERGRIGLNTALLENSPGELIV 378


>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
           Brener]
 gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
          Length = 284

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 22/171 (12%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR    +R    +   L +  GS+ + +G T  +  V  G     Q        ++ 
Sbjct: 7   RRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVN-GPVAARQ-----EDYRKC 60

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR------------AIHPVLPQTAQFP 420
           +  ++ N        + R G   R  +   RL ++            +I  V+       
Sbjct: 61  NVQVYVNRAVR----IPRAGGTDRLCVEEQRLEQQRMDAEVEMFLTASIQAVVRLDQFPR 116

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
             L +   I   DG+           AL+DAGVP    VA + +      D
Sbjct: 117 CVLEVHVTILADDGALLSVATNALMCALLDAGVPCRTTVAAVTIVAFAPED 167


>gi|222147725|ref|YP_002548682.1| hypothetical protein Avi_0962 [Agrobacterium vitis S4]
 gi|221734713|gb|ACM35676.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 770

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + +G V  V  FGAFV     +DGLVH+SQL+ + V    +VVK G
Sbjct: 650 KPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEVVKAG 699


>gi|322391661|ref|ZP_08065129.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
 gi|321145472|gb|EFX40865.1| S1 RNA binding domain protein [Streptococcus peroris ATCC 700780]
          Length = 120

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++     G++  +  +GAFV       GL+HIS++ T  +    DV+K G+ V V+++D
Sbjct: 1   MKIGDKLNGRITGIQPYGAFVELETGVTGLIHISEIRTGFIENIHDVLKVGEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           FD+  GK  LS++ +++ 
Sbjct: 61  FDEFTGKASLSIRTLEEE 78


>gi|124022484|ref|YP_001016791.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962770|gb|ABM77526.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9303]
          Length = 481

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S      AAR          EV ++ +GQVV V  +G F+   G   GL+H S 
Sbjct: 352 TRKLVLSEKRAATAAR------FSELEVGQLVEGQVVAVKPYGFFIDL-GGVSGLLHQSM 404

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           ++   +    +V  +GD V   + + D  RG+I L+  +++   G+ ++
Sbjct: 405 ITGGSLRSLREVFNQGDRVKALITEMDPGRGRIALNTALLEGQPGELLI 453


>gi|317057260|ref|YP_004105727.1| Tex-like protein [Ruminococcus albus 7]
 gi|315449529|gb|ADU23093.1| Tex-like protein [Ruminococcus albus 7]
          Length = 760

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
             G V  V+DFGAFV      DGLVHISQL  + +    +VVK GD V V +LD D  RG
Sbjct: 646 LMGTVRNVIDFGAFVDIGVHEDGLVHISQLCDKFIKHPLEVVKVGDVVKVWVLDVDMQRG 705

Query: 682 KIKLSMKVVDQNTGKP 697
           ++ L+MK    +  KP
Sbjct: 706 RVSLTMK----DPSKP 717


>gi|303279833|ref|XP_003059209.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459045|gb|EEH56341.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 505

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA----------- 658
             +      V  +  G V  V+ FGAFV       GLVH S L                 
Sbjct: 414 HAATAKDLGVGDVLDGVVRNVVPFGAFVDVGVGDSGLVHRSTLGAGSAGAGGGGGGRGRP 473

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +  DV + G +V VK+   D  RG+I L++
Sbjct: 474 EPHDVFRAGQSVRVKVTGLDLARGRISLAL 503


>gi|148377886|ref|YP_001256762.1| hypothetical protein MAG_6230 [Mycoplasma agalactiae PG2]
 gi|148291932|emb|CAL59323.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 720

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 7/139 (5%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTVKIASSSLAEIEAAREM 609
           V+ + I  + I   +     +     E    + +   I D            +     + 
Sbjct: 574 VDKLGIDLENINTEVLKNADIKSLAAEFNSNEYDVKLIIDSLINPTKDIRDEKEGYKLKK 633

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST---ERVAKTSDVVKE 666
                   +V  I +G V  + DFG FV+    +  L+HIS++       VA   D+VK 
Sbjct: 634 DILNLKDLKVGMILEGSVQNITDFGIFVYIGIKQAVLIHISKMKKTPTHYVAHPKDLVKT 693

Query: 667 GDTVWVKLLDFDDRG-KIK 684
           GD V +++++ +    KI+
Sbjct: 694 GDVVTLEIIEINKENDKIQ 712


>gi|145350993|ref|XP_001419873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580106|gb|ABO98166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1869

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 611  RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERV-AKTSDVVKEGD 668
             +     +V  +  G V +V  +G FV   G +  GL HIS  +  R+    +  V++G+
Sbjct: 1385 NADVSTVKVGDVLIGTVRRVQPYGVFVSLDGTKLSGLCHISMFADARISDDLASHVRQGE 1444

Query: 669  TVWVKLLDFD-DRGKIKLSMKV 689
             V  K+L+ + +  KI L +K 
Sbjct: 1445 RVRTKVLEINTETNKISLGIKA 1466



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 623  YKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
             +G + +V++  G  V       G VH++ ++ E         + G  V V++L+    G
Sbjct: 1217 VQGIITRVVENVGLMVQLGSHSVGRVHLTDMADEYDDDPCAKYEAGQVVQVRVLNASSNG 1276

Query: 682  KIKLSMKV 689
            ++ LSM+ 
Sbjct: 1277 ELDLSMRA 1284



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDFGAFV 637
           ++ G  V ++   T  + S  L+ +E++RE  + +      +  ++ G V      G FV
Sbjct: 714 DEIGPLVVLEGKSTRAVMSRKLSLVESSREGKLPATAKEATLGAVFPGYVASATAAGVFV 773

Query: 638 HFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD---DRGKIKLSMKV 689
            F G   GL   SQL+        ++   G TV   +L  D      ++ LS+KV
Sbjct: 774 RFLGRLTGLAPPSQLTDGTTGDVHEMFPVGKTVNALILSVDTSTPTPRLSLSLKV 828



 Score = 39.1 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHF---CGARD--GLVHISQLSTERVAKTSDVVKE 666
           +  ++P++ K ++   ++ +D G  V      G  D  G  H+SQLS ERV K     K 
Sbjct: 379 ASIELPKLGKTFQTAKIERVDAGQGVALSISDGKNDIAGYAHVSQLSDERVEKVEKKFKI 438

Query: 667 GDTVWVKLLD 676
           G +V V+++ 
Sbjct: 439 GRSVSVRVIG 448



 Score = 38.7 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 621  KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
            +  KG V      G F+      D +  +S L+   +A  +     G  V  +++  D  
Sbjct: 1309 QRVKGYVKATSKKGCFIALSRGIDAMCKLSNLADSFIADPAKTFPPGKLVEGRIVSADAA 1368

Query: 680  RGKIKLSMKVVDQNTG 695
            +G+++L+ +  D   G
Sbjct: 1369 KGRVELAFRETDATQG 1384



 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 51/129 (39%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           PP  I +++G           +   +V   D  + +   S    +  +   +    +   
Sbjct: 506 PPLHISDIVGRTTSAKVAPGAKLKFRVLNVDRNSRRATVSHKRTLIKSELPVIGQIEDAV 565

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              I  G V  V ++G FV   G   GL  ++ L   R  K SD    G  V V+++  D
Sbjct: 566 PGSITHGVVTGVNEYGVFVSLYGDLKGLAGLNDLGLLRDQKPSDAFGVGQVVRVQVVSAD 625

Query: 679 DRGKIKLSM 687
             G+++LS+
Sbjct: 626 TSGRLRLSL 634


>gi|195952441|ref|YP_002120731.1| RNA binding S1 domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932053|gb|ACG56753.1| RNA binding S1 domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 525

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           P++    IG         ++    +++  D   + +      E  AA  +  +       
Sbjct: 287 PEESMKNIGNKLLKSGTKLKLVVTRID-KDKKQIDVNIVPSEENPAADFIKSNP-----P 340

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD 679
           N I KG+V  V    AF+      +G+V    +S  + A++ +++  G+     +L  D 
Sbjct: 341 NTIVKGKVKTVHPNIAFIELGPNVEGIVKKQDMSWLKNARSEELLTPGEEKEFMVLGLDG 400

Query: 680 RGKIKLSMKVVDQNTG 695
           + K+KL +K + QN  
Sbjct: 401 K-KVKLGLKQLTQNPW 415



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 30/219 (13%)

Query: 493 VAGTDSGITAMQMDMKIGGISENIMVMALQ------QAKRGRLHILNEMSKVLSESRLQL 546
                 GITA+  +  +  I   ++    +      +  + +  I   +           
Sbjct: 275 FVELQEGITALVPEESMKNIGNKLLKSGTKLKLVVTRIDKDKKQIDVNIVPSEENPAADF 334

Query: 547 GEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD----GTVKIAS 597
            +  P   I+      + P+     +G   + I    + +  K    ++    G  K   
Sbjct: 335 IKSNPPNTIVKGKVKTVHPNIAFIELGPNVEGIVKKQDMSWLKNARSEELLTPGEEKEFM 394

Query: 598 SSLAEIEAAREMIRSITDVP--------EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
               + +  +  ++ +T  P        +  +  +  V +V  FG F+      DGL+ I
Sbjct: 395 VLGLDGKKVKLGLKQLTQNPWSVIPERYKPGQQVELAVKEVRPFGTFLGLPEGIDGLLPI 454

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKIKLSM 687
           S++           ++ G  + VK+L+ + +  KI  SM
Sbjct: 455 SEIPKNTN------LEPGQNITVKVLEVNPKEEKITFSM 487


>gi|307107853|gb|EFN56095.1| hypothetical protein CHLNCDRAFT_145628 [Chlorella variabilis]
          Length = 1396

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           KV   D  T K+  +    +  ++    + T          G V    DFG FV F G  
Sbjct: 492 KVLTVDPATKKVTMTLKPSLVGSKLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFGGV 551

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
            GL H+S+       K  +  + G  V  ++L  D   K +KLS+
Sbjct: 552 TGLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSL 596



 Score = 37.2 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G V  V     FV F     G   ++QLS   V+      +EG +V   ++D   R +  
Sbjct: 768 GYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSVRATVVD-AQRQRFS 826

Query: 685 LSMKV 689
           +++K 
Sbjct: 827 VALKQ 831


>gi|321258889|ref|XP_003194165.1| rRNA processing-related protein [Cryptococcus gattii WM276]
 gi|317460636|gb|ADV22378.1| rRNA processing-related protein, putative [Cryptococcus gattii WM276]
          Length = 1486

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 581  TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            +G  ++I+        +      ++A++         E  +     V KV  +G F+   
Sbjct: 955  SGKILSINPKSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIE 1014

Query: 641  G-ARDGLVHISQLSTERVAKTSDVVK---EGDTVWVKLLDFD-DRGKIKLSMKV 689
            G    GL H S+++  R A  +  +K   EGD V  K++  D ++GKI   +K 
Sbjct: 1015 GSNVSGLCHKSEVTDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKA 1068



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G V+K++D G  V         +  S+ S   +   S+    G  + V+++  
Sbjct: 615 KVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITL 674

Query: 678 DDRG-KIKLSMKV 689
           D    +I +S+K 
Sbjct: 675 DPSTSRIVVSVKQ 687



 Score = 44.5 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                 ++ +  +G + ++ D   FV+  G  DG+VH +  +  R+       K   +V 
Sbjct: 520 MQVSELKIGQQLRGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEASVK 579

Query: 672 VKLLDFDD-RGKIKLSMK 688
            ++L  +  R ++ L++K
Sbjct: 580 ARVLYLEPARNRVVLTLK 597



 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 25/73 (34%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +  +  +G V  +   G FV         + I +L  E V       +  
Sbjct: 892 DREINTVDDLKQGETVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWESRFEIN 951

Query: 668 DTVWVKLLDFDDR 680
             V  K+L  + +
Sbjct: 952 QLVSGKILSINPK 964


>gi|303285536|ref|XP_003062058.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456469|gb|EEH53770.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 432

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 48/100 (48%), Gaps = 18/100 (18%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTE---RVAKTSD-------VVK 665
           P V  I +G+V  V  FG FV   G R DGLVH + +  E   R   + D          
Sbjct: 35  PAVGAILRGRVASVRPFGIFVRMDGFRRDGLVHCTHVGEELTFRREDSDDAKVMAMEYFH 94

Query: 666 EGD-TVWVKLLDFDDRG------KIKLSMKVVDQNTGKPI 698
             D +VWVK++D    G      KI LSMK+VDQ  GK +
Sbjct: 95  PKDASVWVKVIDVHRDGYTGGNVKIALSMKLVDQADGKDL 134



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           +    + +++ G   + +V      +                  + +  F P+   + + 
Sbjct: 48  VRPFGIFVRMDGFRRDGLVHCTHVGEELTFR----REDSDDAKVMAMEYFHPKDASVWVK 103

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDG----TVKIASSSLAEIEAAREMIRS 612
              +      GG V   +  +   + +   +D DG     +                   
Sbjct: 104 VIDVHRDGYTGGNVKIALSMKLVDQADGKDLDPDGAQLAELARGGGGGGGGGGGGSSNAW 163

Query: 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLST-----------ERVAKT 660
             D PE+N  ++  V +V  +G FV   G  ++GLV   Q+S            E+V   
Sbjct: 164 SDDPPELNSTHRATVREVKPYGVFVQMEGYRKNGLVPTHQVSDFLEFAREDADEEKVRGI 223

Query: 661 SDVVKEGDTVWVKLLDFDDRG------KIKLSMKVVDQNTGKPI 698
             V+  G++ WVK+++    G      K+  S+K+ DQ+TG+ +
Sbjct: 224 EGVIGRGESCWVKVVEIKGGGYANDPVKVTCSLKLADQSTGEDL 267


>gi|238569069|ref|XP_002386567.1| hypothetical protein MPER_15135 [Moniliophthora perniciosa FA553]
 gi|215438881|gb|EEB87497.1| hypothetical protein MPER_15135 [Moniliophthora perniciosa FA553]
          Length = 223

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 646 LVHISQLSTE-RVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +VH+S + T  RV   SD++ +G  V VK++      +I LSMK VDQ +G+ +
Sbjct: 1   MVHVSNIQTGTRVNSASDLLSKGQNVKVKVMSVAG-NRIGLSMKDVDQVSGQDL 53


>gi|291320611|ref|YP_003515876.1| hypothetical protein MAGa7190 [Mycoplasma agalactiae]
 gi|290752947|emb|CBH40922.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 721

 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---IDDDGTVKIASSSLAEIEAAREM 609
           V+ + I  + I   +     +     E    + +   I D            +     + 
Sbjct: 574 VDKLGIDLENINAEVLKNADIKSLAAEFNSNEYDVKLIIDSLINPTKDIRDEKEGYKLKK 633

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST---ERVAKTSDVVKE 666
                +  +V  I +G V  + DFG FV+    +  L+HIS++       VA   D+VK 
Sbjct: 634 DILNLEDLKVGMILEGSVQNITDFGIFVYIGIKQAVLIHISKMKKTPTHYVAHPKDLVKT 693

Query: 667 GDTVWVKLLDFDDRG-KIK 684
           GD V +++++ +    KI+
Sbjct: 694 GDVVTLEIIEINKENDKIQ 712


>gi|213616152|ref|ZP_03371978.1| putative transcription accessory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 96

 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           S LST+ V     VVK GD V VK+L+ D  R +I L+M+ +D+  G+
Sbjct: 1   SSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGE 47


>gi|318041061|ref|ZP_07973017.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0101]
          Length = 424

 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S      AA           EV ++ +GQVV V  +G FV   G   GL+H S 
Sbjct: 295 TRKLVLSEKKAATAAIFQN------LEVGQLVEGQVVSVKPYGLFVDL-GGISGLLHQSV 347

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           ++  ++    +V  +GD V   + + D  RG+I L+  +++   G+ ++
Sbjct: 348 ITGGQMRDLREVFGQGDRVKALITELDPGRGRIALNTALLEGQPGELLI 396


>gi|108800368|ref|YP_640565.1| RNA binding S1 [Mycobacterium sp. MCS]
 gi|119869497|ref|YP_939449.1| RNA-binding S1 domain-containing protein [Mycobacterium sp. KMS]
 gi|126435991|ref|YP_001071682.1| RNA-binding S1 domain-containing protein [Mycobacterium sp. JLS]
 gi|108770787|gb|ABG09509.1| RNA binding S1 [Mycobacterium sp. MCS]
 gi|119695586|gb|ABL92659.1| RNA binding S1 domain protein [Mycobacterium sp. KMS]
 gi|126235791|gb|ABN99191.1| RNA binding S1 domain protein [Mycobacterium sp. JLS]
          Length = 777

 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNI------DDDGTVKIASSSLAEIEAAREMIR----- 611
           +R ++   G  +  I+       ++      DD   +   S  LAE+E      R     
Sbjct: 580 VRRILDRSGVTLTEIIGNERQLRSLKPADFADDRFGIPTVSDILAELEKPGRDPRPAFST 639

Query: 612 -------SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
                        +V  + +G V  V  FGAFV     +DGLVH+S ++   V+   +VV
Sbjct: 640 ATFAAGVEKVADLKVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHEVV 699

Query: 665 KEGD 668
           + G 
Sbjct: 700 RSGQ 703


>gi|217077615|ref|YP_002335333.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
           TCF52B]
 gi|217037470|gb|ACJ75992.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
           TCF52B]
          Length = 124

 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMK 688
           +++ FGA +         VHIS+++   V   SD +  G  +  K++     GK +L++K
Sbjct: 13  EILKFGANIELEDGEKAFVHISKIAPTYVKSVSDHLSLGQEIEGKIVGKTRDGKWELTLK 72

Query: 689 VVDQNTGK 696
               N+ +
Sbjct: 73  DTSANSSE 80


>gi|156120853|ref|NP_001095573.1| protein RRP5 homolog [Bos taurus]
 gi|224493288|sp|A7MB10|RRP5_BOVIN RecName: Full=Protein RRP5 homolog; AltName: Full=Programmed cell
           death protein 11
 gi|154425541|gb|AAI51278.1| PDCD11 protein [Bos taurus]
          Length = 1874

 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + LS + V  TSD   EG TV  K+ 
Sbjct: 723 EIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVT 782

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 783 NVDEEKQRMLLSLRLSD 799



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +P   + +++    +    + ++   +V + D    K+  +    +  ++    +  D  
Sbjct: 480 VPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LS E V     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVV 690
           +  + ++ LS +++
Sbjct: 600 EPSKERMLLSFRLL 613



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   + KG+V+ +   G  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D + K
Sbjct: 508 LLCDPKAK 515


>gi|296472696|gb|DAA14811.1| programmed cell death 11 [Bos taurus]
          Length = 1874

 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + LS + V  TSD   EG TV  K+ 
Sbjct: 723 EIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVT 782

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 783 NVDEEKQRMLLSLRLSD 799



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +P   + +++    +    + ++   +V + D    K+  +    +  ++    +  D  
Sbjct: 480 VPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LS E V     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVV 690
           +  + ++ LS +++
Sbjct: 600 EPSKERMLLSFRLL 613



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   + KG+V+ +   G  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D + K
Sbjct: 508 LLCDPKAK 515


>gi|194205704|ref|XP_001499541.2| PREDICTED: RRP5-like protein [Equus caballus]
          Length = 1945

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + +S + V  TSD   EG TV  K+ 
Sbjct: 797 EIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVT 856

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 857 NVDEEKQRMLLSLRLSD 873



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 66/160 (41%), Gaps = 2/160 (1%)

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L + + +  +    L +   ++  + +PP  + +++    +      ++   +V + D  
Sbjct: 529 LVKGTVLTIKPYGMLVKVGEQIRGL-VPPMHLADILMKNPEKKYRTGDEVKCRVLLCDPE 587

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
             K+  +    +  ++    +     +      G +++V D+G  V F     GLV   +
Sbjct: 588 ARKLMMTLKKTLVESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHE 647

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVV 690
           LS E V     V   G  V V +L+ +  + ++ LS K++
Sbjct: 648 LSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFKLL 687



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +   + KG V+ +  +G  V       GLV    L+   +       + 
Sbjct: 514 IEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYRT 573

Query: 667 GDTVWVKLLDFDDRGK 682
           GD V  ++L  D   +
Sbjct: 574 GDEVKCRVLLCDPEAR 589


>gi|317121029|ref|YP_004101032.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591009|gb|ADU50305.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
           12885]
          Length = 418

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-G 681
             G +  ++ +GAF+     R GL+HIS++S   V +  D   +G+ V V+++ FD   G
Sbjct: 151 VHGTITGIVGYGAFLVTDDGRRGLIHISEISDWYVERAEDYFYKGERVQVEVVHFDPNSG 210

Query: 682 KIKLSMKVV 690
           K   S + +
Sbjct: 211 KYAFSTRRL 219


>gi|297526166|ref|YP_003668190.1| translation initiation factor 2, alpha subunit [Staphylothermus
           hellenicus DSM 12710]
 gi|297255082|gb|ADI31291.1| translation initiation factor 2, alpha subunit [Staphylothermus
           hellenicus DSM 12710]
          Length = 267

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M     ++P V +     V K+ D+GA+V        +  +  S++++  V    DV++E
Sbjct: 1   MPIPRKELPNVGEYVIATVKKIFDYGAYVTLDEYNGLEAYLPWSEVASRWVRNIRDVIRE 60

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
              + VK++  + R K + +S+K V +N  +
Sbjct: 61  NQKIVVKVIRVNRRRKTVDVSLKKVPENEKR 91


>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 267

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 101/268 (37%), Gaps = 41/268 (15%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           DI  ++ R  + D    K R+DGR     RDIS + G++ +  GSS    G+TQ IV V 
Sbjct: 2   DIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV- 60

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR------ 407
              +  E + D+    +    + +   LP A+      G P  R +   R+  R      
Sbjct: 61  -KPQIGEPFPDT---PEMGVILTNSELLPMASPTFEP-GPPDERSVELSRVVDRCVRESQ 115

Query: 408 --AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV------------ 453
              +  +        + L +   I + DG+   A V  +  AL+D  +            
Sbjct: 116 MIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVLV 175

Query: 454 --------PISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
                   PI++    +     K GD+  I+ D   +E+ +      +  T+ G      
Sbjct: 176 DRENMQPLPINRK--ALMCTFAKIGDE--IILDPCLEEEDILTARLSIGVTEDGSICAMQ 231

Query: 506 DMKIGGISENIMVMALQQAKRGRLHILN 533
               G ++ + ++ A+  A+     ++ 
Sbjct: 232 KGGEGALTRDDVLRAVSIAREKVPQLIE 259



 Score = 44.1 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 38/243 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +ETG I++ ++G+     G T ++  V      + G+ F P T            +
Sbjct: 31  RDISIETGVISK-AEGSSRVKLGNTQIIVGV----KPQIGEPF-PDTPEMGVILTNSELL 84

Query: 74  PGGYLRRESRP-TENEILISRMIDRSIRPL----FSKCYKNETQVIINV------MQHDL 122
           P      E  P  E  + +SR++DR +R        K    E   +  +      + +D 
Sbjct: 85  PMASPTFEPGPPDERSVELSRVVDRCVRESQMIDLEKLCIIEGSKVWMLFLDLHIIDYDG 144

Query: 123 E-------------SSPHVVSMVAASAALML-----SGLPFEGPVVGAQVDYINGQYVLN 164
                             + +       +++       LP     +      I  + +L+
Sbjct: 145 NLFDAAVLATVAALLDTRIPAAEVEDGEVLVDRENMQPLPINRKALMCTFAKIGDEIILD 204

Query: 165 PRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISKL 221
           P L+E+   +  L +  T+D  +    +  +  L+ D VL A+     +   +IE + K 
Sbjct: 205 PCLEEEDILTARLSIGVTEDGSICAMQKGGEGALTRDDVLRAVSIAREKVPQLIEYLDKS 264

Query: 222 AKM 224
              
Sbjct: 265 MAP 267


>gi|131888895|ref|NP_001076540.1| exosome complex exonuclease RRP46 isoform 2 [Danio rerio]
 gi|94733275|emb|CAK04296.1| novel protein similar to mouse and human exosome component 5
           (EXOSC5) [Danio rerio]
          Length = 128

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 13/124 (10%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R    +R+  ++  LL R  GSS F++GDT  +  V  G  E                  
Sbjct: 9   RSCPVLREYGSEQSLLSRPDGSSTFVQGDTSILAGV-YGPAEV------------KVSKE 55

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
            Y+          +MG PS RE    +  R      L  T     +L ++ ++   DGS 
Sbjct: 56  IYDRATVEVLIQPKMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSV 115

Query: 437 SMAT 440
           S   
Sbjct: 116 SSTP 119


>gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica]
          Length = 271

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 42/277 (15%)

Query: 289 GEIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQA 348
            ++     DI  +      L + VR DGR  + +R +     +      S++   G+T+ 
Sbjct: 5   EQLSRQIADICPEDHLKSFLQRDVRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKV 64

Query: 349 IVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA--- 405
           I  +T  T +        +  +   F +++ F    +      G P+  E+         
Sbjct: 65  ICGITAETIKPA-----AATPKDGSFSVNFEFSSVCSPNAKA-GPPN--EVAQTMSIFLD 116

Query: 406 ---RRAIH--PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP------ 454
              ++      +  +     +TL I     E DG+ + A +     +L D  +P      
Sbjct: 117 GILKQVFQTNQLCIEPDLLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDE 176

Query: 455 ----------------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
                           +         G        I+L D +  E  LG     V  ++ 
Sbjct: 177 ETAKPLVNLEKQSPVDLKMFPVSTTYGEFS----GILLLDPTARETELGSSPITVVCSEK 232

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
           G            +S+  +  A++ +KR    I ++ 
Sbjct: 233 GALLCFNRSGGSPLSQEQVAAAIENSKRRSSTIYDQY 269


>gi|134111727|ref|XP_775399.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258058|gb|EAL20752.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1484

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 581  TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            +G  ++I+        +      ++A++         E  +     V KV  +G F+   
Sbjct: 956  SGKILSINPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIE 1015

Query: 641  G-ARDGLVHISQLSTERVAKTSDVVK---EGDTVWVKLLDFD-DRGKIKLSMKV 689
            G    GL H S+++  R A  +  +K   EGD V  K++  D ++GKI   +K 
Sbjct: 1016 GSNVSGLCHKSEITDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKA 1069



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G V+K++D G  V         +  S+ S   +   S+    G  + V+++  
Sbjct: 616 KVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVITV 675

Query: 678 DDR-GKIKLSMKV 689
           D    +I +S K 
Sbjct: 676 DASASRIVVSAKQ 688



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              D  +V +  KG + ++ D   FV+  G  DG+VH +  +  R+       K   +V 
Sbjct: 521 MQVDELKVGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEGSVK 580

Query: 672 VKLLDFDD-RGKIKLSMK 688
            ++L  +  R ++ L++K
Sbjct: 581 ARVLYLEPTRNRVVLTLK 598



 Score = 38.4 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT-SDVVKEGDTVWVKLLD 676
           EV +I  G V +    G  V       G VH    S   V       +  G+ V   +LD
Sbjct: 809 EVGQIITGTVQEQTSQGYMVQLPNNLRGRVHPCDSSDYLVLAAGHGPLTVGEEVKCYVLD 868

Query: 677 FDDRGK-IKLSMK 688
            +   + I LS +
Sbjct: 869 VNRSKRAIDLSTR 881



 Score = 37.6 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +  +  +G V  +   G FV         + I +L  E V       +  
Sbjct: 893 DREINTVDDLKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEIN 952

Query: 668 DTVWVKLLDFDD 679
             V  K+L  + 
Sbjct: 953 QLVSGKILSINP 964


>gi|15606647|ref|NP_214027.1| ribosomal protein S01 [Aquifex aeolicus VF5]
 gi|2983866|gb|AAC07419.1| ribosomal protein S01 [Aquifex aeolicus VF5]
          Length = 535

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            A             V    KG+V+K+    A V       G++H S LS  R  +  +V
Sbjct: 335 RAQPRPWEIFLQKHPVGSKVKGKVIKIEGSRAIVELEDGVKGVIHRSDLSWTRPKRVEEV 394

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           +KEG+     +L  + +  +KL +K + +N  + +
Sbjct: 395 LKEGEEREFAVLGLEGK-YVKLGLKQLTENPWEKV 428



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEG 667
               + +  +V  + K  V ++  FGAF+ F    +GL+  S++    R+ K       G
Sbjct: 424 PWEKVKEKYKVGDVVKLPVKELAPFGAFLEFPEGVEGLLPFSEVPRHIRIRK-------G 476

Query: 668 DTVWVKLLDFDDR-GKIKLSMKVV 690
               VK++D + + GKI  S+  +
Sbjct: 477 QEYEVKIIDINPKEGKITFSINAL 500



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 589 DDGTVKIASSSLAEIEAARE-MIRSITDVPEVNKIYKGQVVKVMDF-GAFVHFCGARDGL 646
           D    +I  S  A ++  RE   + + +  +   + +G+VVK+    G  +   G     
Sbjct: 150 DSKRPQIIVSHKAYLDEQREKRKQELLNTLKPGDVVEGKVVKIDPNKGVTLVIEGVLRAF 209

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
           +   +LS  R     +    G+T+ VK+   D  +G I +S++ +  N  +
Sbjct: 210 LPKEELSWGRDKNPYNYTDVGETLKVKVKRVDKQKGFIIVSLRELKGNPWE 260



 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
                    +   + +G+VV V   G  V      +G V   +L+ E   K     K+GD
Sbjct: 258 PWEKFLKEHKEGDVIEGRVVAVTPKGVVVEVMEGVEGFVPEEELAWE--GKPE--FKKGD 313

Query: 669 TVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            V  K++  D  R ++ LS+K       +
Sbjct: 314 LVKAKIMKIDPKRRRLILSIKRAQPRPWE 342


>gi|14324700|dbj|BAB59627.1| DNA-directed RNA polymerase E' [Thermoplasma volcanium GSS1]
          Length = 195

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 18/99 (18%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----------- 657
              ++   PE+ +I  G+VV V  FGAFV F    +GL+HISQ+  +R+           
Sbjct: 84  KYSALVFYPEMQEIVDGEVVSVQKFGAFVKFSSF-EGLLHISQIMDDRIDVDLENKRFIG 142

Query: 658 AKTSDVVKEGDTVWVKLLDFD------DRGKIKLSMKVV 690
             T   +K GD V V+++  +      +  KI  +MK V
Sbjct: 143 KDTKRDLKVGDKVRVRIVALNLASSSVEDSKIGFTMKQV 181


>gi|33861087|ref|NP_892648.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639819|emb|CAE18989.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 405

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             + ++ S     +  ++ +G+V+ +  +G FV   GA  GL+H S ++   +    ++ 
Sbjct: 284 EKKALLVSKFADLKFGQLIEGEVLAIKPYGFFVDLGGA-SGLLHQSSITNGSIRNLREIF 342

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +EG+ +   + + D +RG+I L+  +++   G+ I+
Sbjct: 343 REGEVIKALITEIDLERGRIGLNTALLENTPGELII 378


>gi|58267098|ref|XP_570705.1| rRNA processing-related protein [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226939|gb|AAW43398.1| rRNA processing-related protein, putative [Cryptococcus neoformans
            var. neoformans JEC21]
          Length = 1484

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 581  TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC 640
            +G  ++I+        +      ++A++         E  +     V KV  +G F+   
Sbjct: 956  SGKILSINPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIE 1015

Query: 641  G-ARDGLVHISQLSTERVAKTSDVVK---EGDTVWVKLLDFD-DRGKIKLSMKV 689
            G    GL H S+++  R A  +  +K   EGD V  K++  D ++GKI   +K 
Sbjct: 1016 GSNVSGLCHKSEITDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKA 1069



 Score = 43.7 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V ++  G V+K++D G  V         +  S+ S   +   S+    G  + V+++  
Sbjct: 616 KVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVITV 675

Query: 678 DDR-GKIKLSMKV 689
           D    +I +S K 
Sbjct: 676 DASASRIVVSAKQ 688



 Score = 43.7 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
              D  +V +  KG + ++ D   FV+  G  DG+VH +  +  R+       K   +V 
Sbjct: 521 MQVDELKVGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEGSVK 580

Query: 672 VKLLDFDD-RGKIKLSMK 688
            ++L  +  R ++ L++K
Sbjct: 581 ARVLYLEPTRNRVVLTLK 598



 Score = 37.6 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   +  D  +  +  +G V  +   G FV         + I +L  E V       +  
Sbjct: 893 DREINTVDDLKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEIN 952

Query: 668 DTVWVKLLDFDD 679
             V  K+L  + 
Sbjct: 953 QLVSGKILSINP 964



 Score = 37.2 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE-RVAKTSDVVKEGDTVWVKLLD 676
           EV +I  G V +    G  V       G VH    S +  +A     +  G+ V   +LD
Sbjct: 809 EVGQIITGTVQEQTSQGYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLTVGEEVKCYVLD 868

Query: 677 FDDRGK-IKLSMK 688
            +   + I LS +
Sbjct: 869 VNRSKRAIDLSTR 881


>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
 gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
          Length = 263

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 93/257 (36%), Gaps = 35/257 (13%)

Query: 294 VFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           +  +I  + V  ++ + + R DGR  +  R+IS + G++++  GS+    G+TQ I+   
Sbjct: 4   IVPEIIKESVTNLVKNGE-RTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGA- 61

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR------ 407
               + +              M +   LP A       G P    +   R+  R      
Sbjct: 62  ----KPQIGTPFGDTPNVGVLMTNTELLPMAAPNFES-GPPDENSVELSRVTDRCIREGE 116

Query: 408 --AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----ISKPVA- 460
              +  +     +  + + +   + + DG+   A V GS  ALM+  +P    I   V  
Sbjct: 117 VVDLEKLCIVPGEKVWMIFLDLHVVDYDGNLMDAAVLGSVAALMNTRLPEAKIIDDEVVL 176

Query: 461 -------------GIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
                         +     K G++ II  D S +E+ +      +  T  G        
Sbjct: 177 DYDNLIPLPINDTALMSTFAKIGEELII--DPSLEEEEVMGARLSIGITKDGNICAMQKG 234

Query: 508 KIGGISENIMVMALQQA 524
               +++  ++ A+  A
Sbjct: 235 GEKTLTQEEVLKAVSIA 251



 Score = 41.8 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 82/226 (36%), Gaps = 38/226 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGK 72
           R + LE G I + ++G+     G T ++         + G  F     V        +  
Sbjct: 32  REISLEAGVIEK-AEGSARVKIGNTQIIIGA----KPQIGTPFGDTPNVGVLMTNTELLP 86

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPL----FSKCYKNETQ----VIINVMQHDLES 124
           +          P EN + +SR+ DR IR        K      +    + +++   D + 
Sbjct: 87  MAAPNF-ESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGEKVWMIFLDLHVVDYDG 145

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQV--------------------DYINGQYVLN 164
           +    +++ + AALM + LP    +    V                      I  + +++
Sbjct: 146 NLMDAAVLGSVAALMNTRLPEAKIIDDEVVLDYDNLIPLPINDTALMSTFAKIGEELIID 205

Query: 165 PRLDEDQG-SLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFG 207
           P L+E++     L +  T+D  +    +  +  L+++ VL A+   
Sbjct: 206 PSLEEEEVMGARLSIGITKDGNICAMQKGGEKTLTQEEVLKAVSIA 251


>gi|291449079|ref|ZP_06588469.1| transcription accessory protein [Streptomyces roseosporus NRRL
           15998]
 gi|291352026|gb|EFE78930.1| transcription accessory protein [Streptomyces roseosporus NRRL
           15998]
          Length = 717

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 26/49 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK 
Sbjct: 667 EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKV 715


>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
           DSM 4184]
 gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
           4184]
          Length = 274

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 98/274 (35%), Gaps = 38/274 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI-- 349
                 ++ + +R ++   K R+DGR+ E +R+I  +  +++   GS+    G T  +  
Sbjct: 9   KRFISYLRKEQIRKLLA-TKYRIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAG 67

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI 409
           V V+LG                   +++   LP A+     +G P    I   R+  R I
Sbjct: 68  VKVSLG-------QPFPDAPDEGVLVVNAEVLPHASPYTE-VGPPDEFAIELARVIDRGI 119

Query: 410 HPV-------LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPI------- 455
                     L       Y L +   +   DG+   A    +  AL D  +P+       
Sbjct: 120 RHCGYVDFKKLVVEGGKAYVLWVDLYVINDDGNLIDAANLAAVAALKDTQLPVVVKDEQG 179

Query: 456 -------SKP----VAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
                    P    V+   + +       ++  D + +E+           ++  I A+Q
Sbjct: 180 VKLDRNNKTPLPIEVSKAPIAVSVGKIGGVLFLDPTFEEELSLDGRITFTISEDRIVAVQ 239

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKV 538
             +  G  +   + MAL+ A +G+  ++     V
Sbjct: 240 KTI--GTFTSQELEMALELAWKGKEQLITAARGV 271



 Score = 40.7 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 51/242 (21%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVG 71
           R ++++T  I + +DG+     G+T V+A V     +   D  D   L VN +   +A  
Sbjct: 39  RNIEIKTSVI-KTADGSAEVKLGKTHVVAGVKVSLGQPFPDAPDEGVLVVNAEVLPHASP 97

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---------LFSKCYKNETQVIINVMQHDL 122
               G       P E  I ++R+IDR IR          +          V + V+  D 
Sbjct: 98  YTEVGP------PDEFAIELARVIDRGIRHCGYVDFKKLVVEGGKAYVLWVDLYVINDDG 151

Query: 123 E-------------SSPHVVSM------------VAASAALMLSGLPFEGPVVGAQVDYI 157
                             +  +                  + +S  P    V       I
Sbjct: 152 NLIDAANLAAVAALKDTQLPVVVKDEQGVKLDRNNKTPLPIEVSKAPIAVSV-----GKI 206

Query: 158 NGQYVLNPRLDEDQGSLD--LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVI 215
            G   L+P  +E + SLD  +  + ++D ++ V+      +   +  A+       + +I
Sbjct: 207 GGVLFLDPTFEE-ELSLDGRITFTISEDRIVAVQKTIGTFTSQELEMALELAWKGKEQLI 265

Query: 216 EA 217
            A
Sbjct: 266 TA 267


>gi|294501756|ref|YP_003565456.1| ribonuclease R [Bacillus megaterium QM B1551]
 gi|295707106|ref|YP_003600181.1| ribonuclease R [Bacillus megaterium DSM 319]
 gi|294351693|gb|ADE72022.1| ribonuclease R [Bacillus megaterium QM B1551]
 gi|294804765|gb|ADF41831.1| ribonuclease R [Bacillus megaterium DSM 319]
          Length = 780

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 19/124 (15%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   S+       +M ++     +V +++ G +  V +FG FV      +GLVH+S L+
Sbjct: 604 NMERRSVDAERETDDMKKAEFMADKVGEVFNGIISSVTNFGMFVELENTIEGLVHVSDLT 663

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK--------IKLSMKVVDQNT 694
            +              KT +V + GD + VK+ D +   +        +K S K + ++ 
Sbjct: 664 DDYYRYDERHYAMIGEKTGNVFRIGDEIEVKVADVNKDERSVDFIIVGMKESRKRLSKDR 723

Query: 695 GKPI 698
            K I
Sbjct: 724 PKVI 727


>gi|239945621|ref|ZP_04697558.1| putative transcription accessory protein [Streptomyces roseosporus
           NRRL 15998]
          Length = 701

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 26/49 (53%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           E   + +G V  V  FGAFV     +DGLVH+S LS   V    DVVK 
Sbjct: 651 EPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKV 699


>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 258

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 94/255 (36%), Gaps = 37/255 (14%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  +  R D R S   RD+    G++    GS+    G T+ +  V L   +++ Y D+ 
Sbjct: 15  LAKEGKREDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKL--VQEDVYEDT- 71

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP-------VLPQTAQF 419
               + + ++    LP A  E    G PS   I  GR+  RAI          L      
Sbjct: 72  --PDQGNLVVSAELLPLAAAEYE-TGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGK 128

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP-----------------ISKPVAGI 462
            +T+ +   +   DG+   A+V  +  A++DA VP                 +   V+  
Sbjct: 129 AWTVYVDVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKADYTKREKKLKVDNVVSST 188

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMAL 521
               +       IL D +G+E     MD ++  +  G +         G  S   +   +
Sbjct: 189 TFAKIGK----AILLDPTGNE--ELGMDARLTISTDGKMIRAMQKGLAGSFSVEEIESLI 242

Query: 522 QQAKRGRLHILNEMS 536
            ++ +   H+  ++ 
Sbjct: 243 AESLKKHAHMEKKIR 257



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 20/142 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           R LK+  G I   ++G+  A  G T VLA V  V +   +D  D   L V+ +    A  
Sbjct: 31  RDLKISRGVI-DHAEGSAQADLGATKVLAGVKLVQEDVYEDTPDQGNLVVSAELLPLAAA 89

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---------LFSKCYKNETQVIINVMQHDL 122
           +   G       P+   I + R++DR+IR          L  +       V + V+  D 
Sbjct: 90  EYETGP------PSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGKAWTVYVDVYVLNFDG 143

Query: 123 ESSPHVVSMVAASAALMLSGLP 144
            +     S++AA +A++ + +P
Sbjct: 144 -NLFD-ASVIAAMSAILDARVP 163


>gi|13541317|ref|NP_111005.1| DNA-directed RNA polymerase subunit E' [Thermoplasma volcanium
           GSS1]
          Length = 192

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 18/99 (18%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----------- 657
              ++   PE+ +I  G+VV V  FGAFV F    +GL+HISQ+  +R+           
Sbjct: 81  KYSALVFYPEMQEIVDGEVVSVQKFGAFVKFSSF-EGLLHISQIMDDRIDVDLENKRFIG 139

Query: 658 AKTSDVVKEGDTVWVKLLDFD------DRGKIKLSMKVV 690
             T   +K GD V V+++  +      +  KI  +MK V
Sbjct: 140 KDTKRDLKVGDKVRVRIVALNLASSSVEDSKIGFTMKQV 178


>gi|297687318|ref|XP_002821182.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Pongo abelii]
          Length = 1788

 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ 
Sbjct: 641 EIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVT 700

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 701 NVDEEKQRMLLSLRLSD 717



 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D    K+  +    +  ++  + +     +      G +++V D+G  V F     GLV 
Sbjct: 427 DPEAXKLMMTLKKTLIESKLPVITCYADAKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVP 486

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
             +LSTE +     V   G  V V +L+ +  + ++ LS K+      K
Sbjct: 487 KHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPK 535


>gi|162448195|ref|YP_001621327.1| RNA-binding S1 domain-containing protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986302|gb|ABX81951.1| RNA-binding S1 domain protein [Acholeplasma laidlawii PG-8A]
          Length = 112

 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KI 683
            +V  +  +G FV +     GL+HIS++S   V   + +   GD ++  +LDFDD+  K+
Sbjct: 9   CKVTGIQPYGVFVEYENY-QGLIHISEISDRFVQDITKLFNIGDEIYAVILDFDDKNQKL 67

Query: 684 KLSMK 688
           +LS K
Sbjct: 68  QLSYK 72


>gi|29436556|gb|AAH49838.1| PDCD11 protein [Homo sapiens]
          Length = 1436

 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC
           35061]
          Length = 262

 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 92/259 (35%), Gaps = 41/259 (15%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           DI  ++ +  +++      R DGR+ +  RDIS +  ++ +  GS+    GDTQ IV   
Sbjct: 3   DIVPEITKESIINLAVNDKREDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVG-- 60

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--- 410
           +  +    + D+         M +   LP A       G PS   I   R+  R I    
Sbjct: 61  IKPQIGAPFPDT---PDLGVLMTNCEMLPMADPTFEP-GPPSEDSIELARVVDRGIRESE 116

Query: 411 -----PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------------- 451
                 +  +  +  + L I   I ++ G+   A       AL                 
Sbjct: 117 LVDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVL 176

Query: 452 ------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
                  +PI+  VA      VK GD   ++ D + +E+ +      V  T  G      
Sbjct: 177 DHENTIDLPINNEVA--MCTFVKIGDK--LILDPTLNEEKVASARLNVGVTKDGNICAMQ 232

Query: 506 DMKIGGISENIMVMALQQA 524
              I  +++  +   + +A
Sbjct: 233 KGGISPLTKEDIFYCVDKA 251



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 42/237 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGK 72
           R + +ET  I++ ++G+     G+T V+  +      K      FP T +          
Sbjct: 32  RDISIETDVISK-AEGSARVKIGDTQVIVGI------KPQIGAPFPDTPDLGVLMTNCEM 84

Query: 73  IPGGYLRRESRP-TENEILISRMIDRSIRPL----FSKCYKNETQVIINVMQHDLES--- 124
           +P      E  P +E+ I ++R++DR IR        K    E + +  +   DL     
Sbjct: 85  LPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF-IDLHIIDN 143

Query: 125 -----SPHVVSMVAA-------SAALMLS----------GLPFEGPVVGAQVDYINGQYV 162
                    ++++AA       SA++              LP    V       I  + +
Sbjct: 144 CGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTFVKIGDKLI 203

Query: 163 LNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIE 216
           L+P L+E++  S  L V  T+D  +    +     L+++ +   +    ++ K ++E
Sbjct: 204 LDPTLNEEKVASARLNVGVTKDGNICAMQKGGISPLTKEDIFYCVDKAVSKTKELVE 260


>gi|40352805|gb|AAH64486.1| PDCD11 protein [Homo sapiens]
 gi|51593565|gb|AAH80560.1| PDCD11 protein [Homo sapiens]
          Length = 1434

 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|84040294|gb|AAI11041.1| PDCD11 protein [Homo sapiens]
          Length = 1444

 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|290558883|gb|EFD92273.1| translation initiation factor 2, alpha subunit [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 240

 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   IY  +V K++  G  V+  G ++G +HIS+LS   V    D+ KEGD +  K+
Sbjct: 1   MEIKEGDIYICKVKKLLQHGVIVYIAGEKEGFIHISELSKRWVRDVKDIAKEGDMLVCKV 60

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
           +        +LS+K V  +  + 
Sbjct: 61  ITTGPS--PELSIKRVTDSEKRE 81


>gi|284035601|ref|YP_003385531.1| Tex-like protein protein-like protein [Spirosoma linguale DSM 74]
 gi|283814894|gb|ADB36732.1| Tex-like protein protein-like protein [Spirosoma linguale DSM 74]
          Length = 713

 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD- 679
            +  G V  +  FGAFV     +DGLVHISQL+   V+  + VVK    V VK+++ D  
Sbjct: 643 MVLPGVVTNITAFGAFVDIGVKQDGLVHISQLANHFVSDPNTVVKVYQKVKVKVMEVDKA 702

Query: 680 RGKIKLSMK 688
           R +I LSMK
Sbjct: 703 RKRIALSMK 711


>gi|301756220|ref|XP_002913967.1| PREDICTED: protein RRP5 homolog [Ailuropoda melanoleuca]
          Length = 1907

 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + +S + V  TSD   EG TV  K+ 
Sbjct: 754 EIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVT 813

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 814 NVDEEKQRMLLSLRLSD 830



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 5/144 (3%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           IPP  + +++    +    I ++   +V + D    K+  +    +  ++    +     
Sbjct: 511 IPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADA 570

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D G  V F     GLV   +LS E V     V   G  V V +L+ 
Sbjct: 571 KPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNC 630

Query: 678 DD-RGKIKLSMKVV----DQNTGK 696
           +  + ++ LS +++     ++ GK
Sbjct: 631 EPSKERMLLSFRLLGDPKKEHPGK 654



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +   + +G V+ +  +G  V       GL+    L+   +       + 
Sbjct: 471 IEAQYLKYHDIKPGALVEGTVLTIKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRI 530

Query: 667 GDTVWVKLLDFDDRGK 682
           GD V  ++L  D   K
Sbjct: 531 GDEVKCRVLLCDPEAK 546


>gi|167516896|ref|XP_001742789.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779413|gb|EDQ93027.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1691

 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
            E  +   G + +V  +G F+         G+ HIS+ + +R+   + +   GD V   +L
Sbjct: 1478 EQGQHVTGVIKRVESYGVFIVIDDSANLTGMAHISECADQRIEDLNKLYSAGDAVKAVVL 1537

Query: 676  DFD-DRGKIKLSMK 688
              D D+ +I L +K
Sbjct: 1538 KVDVDKKRISLGIK 1551



 Score = 51.8 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            V I+     + +   E +    D  ++ +++   +  V+D+G F+       GLV + Q
Sbjct: 765 RVTISCKPQLKAQTKVESLPKELDDLKLGQVFPAYIRSVLDYGCFIGTIHGLSGLVPLRQ 824

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
           L+   V           TV V + + + ++ +   SMK 
Sbjct: 825 LAKRYVDNPKAFFHPDQTVLVAVSEINKEQNRAVFSMKE 863



 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 597  SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
              S  E +AA +      +  + +++++G V    D G FV         V I+ LS   
Sbjct: 1370 RPSEVEGDAATKASVLRMEDVDTDQVHRGVVCNATDEGVFVALSRNVTARVQIANLSDLF 1429

Query: 657  VAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNT 694
            V       K G  V  +++   D G++++S+K  D + 
Sbjct: 1430 VRDIKKAFKVGTLVQGRIMAKTD-GRLEMSLKKSDVDP 1466



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV  + +G V+ ++  G  +         V    L+   +       K GD V  ++L  
Sbjct: 517 EVGLLVQGSVLSLIPSGMVIELASGIQARVPSEHLADVMLTHPEKKFKAGDKVKGRVLSN 576

Query: 678 DD----RGKIKLSMKVVDQNTGKPIV 699
           +     + +IK+++K     +  PI+
Sbjct: 577 EKLKGSKHRIKVTLKKTLVRSDLPII 602


>gi|281352084|gb|EFB27668.1| hypothetical protein PANDA_001797 [Ailuropoda melanoleuca]
          Length = 1874

 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G FV F     GL   + +S + V  TSD   EG TV  K+ 
Sbjct: 722 EIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVT 781

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 782 NVDEEKQRMLLSLRLSD 798



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 5/144 (3%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           IPP  + +++    +    I ++   +V + D    K+  +    +  ++    +     
Sbjct: 479 IPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADA 538

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D G  V F     GLV   +LS E V     V   G  V V +L+ 
Sbjct: 539 KPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNC 598

Query: 678 DD-RGKIKLSMKVV----DQNTGK 696
           +  + ++ LS +++     ++ GK
Sbjct: 599 EPSKERMLLSFRLLGDPKKEHPGK 622



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +   + +G V+ +  +G  V       GL+    L+   +       + 
Sbjct: 439 IEAQYLKYHDIKPGALVEGTVLTIKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRI 498

Query: 667 GDTVWVKLLDFDDRGK 682
           GD V  ++L  D   K
Sbjct: 499 GDEVKCRVLLCDPEAK 514


>gi|78212274|ref|YP_381053.1| SSU ribosomal protein S1P [Synechococcus sp. CC9605]
 gi|78196733|gb|ABB34498.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 424

 Score = 57.2 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             R  +       EV ++ +GQV  V  +G F+   G   GL+H S ++  R+    +V 
Sbjct: 302 EKRAAVAERFQDLEVGQLVEGQVAAVKPYGLFIDL-GGISGLLHQSAITNGRLRSIREVF 360

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            +GD V   + + D  RG+I L+  +++   G+ ++
Sbjct: 361 DQGDRVSALITELDPGRGRIGLNTALLEGPPGELLI 396


>gi|194378984|dbj|BAG58043.1| unnamed protein product [Homo sapiens]
          Length = 1299

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMK 688
           +  + ++ LS K
Sbjct: 600 EPSKERMLLSFK 611



 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
 gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
          Length = 270

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 97/253 (38%), Gaps = 31/253 (12%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  K  R+DGR  + +R+++   G + R  GS+L   G+T+ +V V +       + D+ 
Sbjct: 22  LASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP--FPDT- 78

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--------IHPVLPQTAQ 418
                     +    P A+      G P    I   R+  R         +  ++ +  +
Sbjct: 79  --PNMGILTTNAELAPLASPTFEP-GPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGE 135

Query: 419 FPYTLRIVSEITESDGSS-------SMATVCGSSL--ALMDAGVPISKPV--AGIAMGLV 467
             + + I   + + DG+        ++A +  +++  +  D G     PV    + +   
Sbjct: 136 KVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQHYPVPVTFA 195

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN----IMVMALQQ 523
           K GD   I++D + DE+ +      VA  + G          G  +      ++ M++  
Sbjct: 196 KIGD--WIVADPNLDEESIASARLTVATNEEGKINAMQKGLSGTFTYEEVKKVINMSMNI 253

Query: 524 AKRGRLHILNEMS 536
             + R  IL + +
Sbjct: 254 GGKVREIILGDSN 266



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L +  G I R ++G+ L   G T VL  V     ++ G  F P T N    T      
Sbjct: 38  RNLTVTKGYIPR-AEGSALVNLGNTRVLVGV----KIEPGTPF-PDTPNMGILTTNAELA 91

Query: 74  PGGYLRRESRPT-ENEILISRMIDRSIR 100
           P      E  P  E  I ++R++DR IR
Sbjct: 92  PLASPTFEPGPPGEEAIELARVVDRGIR 119


>gi|148643193|ref|YP_001273706.1| translation initiation factor IF-2 subunit alpha
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445424|ref|ZP_03607939.1| hypothetical protein METSMIALI_01062 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350014|ref|ZP_05975431.1| translation initiation factor 2 subunit alpha [Methanobrevibacter
           smithii DSM 2374]
 gi|166226221|sp|A5UMB0|IF2A_METS3 RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|148552210|gb|ABQ87338.1| translation initiation factor aIF-2, alpha subunit
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434989|gb|EEE42154.1| hypothetical protein METSMIALI_01062 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860800|gb|EFC93098.1| translation initiation factor 2 subunit alpha [Methanobrevibacter
           smithii DSM 2374]
          Length = 265

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + P+  ++  G V KV+++GAF        ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRKNQEWPDEGELIIGTVYKVLNYGAFAKLEEYHGKEAFIHISEVSSGWVKNIRDHVRE 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
              +  ++L  +  +G +  S+K + ++
Sbjct: 61  NQKIVCRVLRVNPKKGHVDASLKRIRED 88


>gi|154346388|ref|XP_001569131.1| exosome-associated protein 4 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066473|emb|CAM44266.1| putative exosome-associated protein 4 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 221

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 18/228 (7%)

Query: 312 VRMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
            R DGR+  E VR I     +L   H S+    G T+ +     G R  +Q V    GT 
Sbjct: 2   KRADGRESPEAVRAIHVATNMLANCHSSACVEIGQTRVLC----GVRPPQQLVQEYRGT- 56

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI-HPVLPQTAQFPYTLRIVSEI 429
           R       +    +      +   S R++    LA   +    +         + ++ EI
Sbjct: 57  RGRVSCQVH---RSLASSLNLDNSSDRDM---ALALEGVAEQAVVLERIPQLLVEVLIEI 110

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHM 489
              DG+   A       AL   GV +    +  +  L  DG    I++D++ +E      
Sbjct: 111 VHDDGAVWDAATTALCAALTAGGVELYDSFSACSAALRHDG---AIVADLAREEAATAIA 167

Query: 490 DFKVAG--TDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEM 535
              V    +  G+            + + ++ A  +  + R   L E 
Sbjct: 168 SVVVCSGLSLGGVYYCCHRGACEATTMSQLLQAAMKGIQVRKVPLLEQ 215


>gi|330834297|ref|YP_004409025.1| translation initiation factor IF-2 subunit alpha [Metallosphaera
           cuprina Ar-4]
 gi|329566436|gb|AEB94541.1| translation initiation factor IF-2 subunit alpha [Metallosphaera
           cuprina Ar-4]
          Length = 255

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           MI +   +P   +I    V KV D+G++V     G     +  S++ST  V    DVVKE
Sbjct: 1   MIYNRYPLPREGEILIATVRKVFDYGSYVTLDEYGGLQAYLPWSEISTRWVKNIRDVVKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
              V VK++  D R G + +S+K V+ +  K
Sbjct: 61  DRKVIVKVIRVDRRKGTVDVSLKKVNDDDRK 91


>gi|116072199|ref|ZP_01469466.1| RNA binding S1 [Synechococcus sp. BL107]
 gi|116064721|gb|EAU70480.1| RNA binding S1 [Synechococcus sp. BL107]
          Length = 412

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           + GT K+  S      AAR          EV ++  G V  V  +G F+   G   GL+H
Sbjct: 280 NSGTRKLVLSEKRASVAAR------FQELEVGQLVDGLVASVKPYGLFIDL-GGISGLLH 332

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            S ++   +    +V  EGD V   + D D  RG+I L+  +++   G+ ++
Sbjct: 333 QSAITNGSLRSIREVFDEGDRVSALITDLDPGRGRIGLNTALLEGPPGELLI 384


>gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434093|gb|EEE41258.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
           DSM 2375]
          Length = 265

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 92/259 (35%), Gaps = 41/259 (15%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           DI  ++ +  +++      R DGR+ +  RDIS +  ++ +  GS+    GDTQ IV   
Sbjct: 6   DIVPEITKESIINLAVNDKREDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVG-- 63

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--- 410
           +  +    + D+         M +   LP A       G PS   I   R+  R I    
Sbjct: 64  IKPQIGAPFPDT---PDLGVLMTNCEMLPMADPTFEP-GPPSEDSIELARVVDRGIRESE 119

Query: 411 -----PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------------- 451
                 +  +  +  + L I   I ++ G+   A       AL                 
Sbjct: 120 LVDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVL 179

Query: 452 ------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
                  +PI+  VA      VK GD   ++ D + +E+ +      V  T  G      
Sbjct: 180 DHENTIDLPINNEVA--MCTFVKIGDK--LILDPTLNEEKVASARLNVGVTKDGNICAMQ 235

Query: 506 DMKIGGISENIMVMALQQA 524
              I  +++  +   + +A
Sbjct: 236 KGGISPLTKEDIFYCVDKA 254



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 42/237 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGK 72
           R + +ET  I++ ++G+     G+T V+  +      K      FP T +          
Sbjct: 35  RDISIETDVISK-AEGSARVKIGDTQVIVGI------KPQIGAPFPDTPDLGVLMTNCEM 87

Query: 73  IPGGYLRRESRP-TENEILISRMIDRSIRPL----FSKCYKNETQVIINVMQHDLES--- 124
           +P      E  P +E+ I ++R++DR IR        K    E + +  +   DL     
Sbjct: 88  LPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF-IDLHIIDN 146

Query: 125 -----SPHVVSMVAA-------SAALMLS----------GLPFEGPVVGAQVDYINGQYV 162
                    ++++AA       SA++              LP    V       I  + +
Sbjct: 147 CGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTFVKIGDKLI 206

Query: 163 LNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIE 216
           L+P L+E++  S  L V  T+D  +    +     L+++ +   +    ++ K ++E
Sbjct: 207 LDPTLNEEKVASARLNVGVTKDGNICAMQKGGISPLTKEDIFYCVDKAVSKTKELVE 263


>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Udp And Gmp
 gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Adp In Double Conformation
 gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With A Single Stranded 10-Mer Poly(A) Rna
 gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Cdp
          Length = 277

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 42/280 (15%)

Query: 296 EDIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV- 351
            +I A ++R  +++   +  R+D R  E  R I  +VG++++  GS+L   G TQ +V  
Sbjct: 7   NEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGI 66

Query: 352 -VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
             +LG    E + D+           +   +P A+      G P  R I   R+  R I 
Sbjct: 67  KTSLG----EPFPDT---PNMGVMTTNVELVPLASPTFEP-GPPDERAIELARVIDRGIR 118

Query: 411 PVLPQTAQFP--------YTLRIVSEITESDGSSSMATVCG------------------- 443
                  +            + I   + + DG+   A                       
Sbjct: 119 ESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEET 178

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
             +  +D   P+  PV  I + +       I++ D S DE+ +      +   ++G  + 
Sbjct: 179 GEVETLDETEPL--PVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISA 236

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
               + G      ++ A++ A +    I   + + + +++
Sbjct: 237 VQKSEGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKAK 276



 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 83/247 (33%), Gaps = 41/247 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           RP+++E G I + ++G+ L   G T VL  +             FP T N    T  V  
Sbjct: 37  RPIEIEVGVIEK-AEGSALVKLGSTQVLVGIKTSLGEP------FPDTPNMGVMTTNVEL 89

Query: 73  IPGGYLRRESRP-TENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
           +P      E  P  E  I ++R+IDR IR           +          + ++V+ HD
Sbjct: 90  VPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHD 149

Query: 122 LESS----------------PHVVSMVAASAALMLSG---LPFEGPVVGAQVDYINGQYV 162
                               P V           L     LP E   V      I    V
Sbjct: 150 GNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGNILV 209

Query: 163 LNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++P LDE+    G + +    T     + + E      + V+ A+     + + + + I 
Sbjct: 210 VDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKLIL 269

Query: 220 KLAKMCA 226
           +  +   
Sbjct: 270 EAVEKAK 276


>gi|162451445|ref|YP_001613812.1| S1 RNA-binding domain-containing protein [Sorangium cellulosum 'So
           ce 56']
 gi|161162027|emb|CAN93332.1| S1 RNA binding domain protein [Sorangium cellulosum 'So ce 56']
          Length = 251

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 623 YKGQVVKVMDFGAFVHFCGAR----DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            KG+V  V  +G FV   G       GLV  ++ +T R A        G  V  K+L+ D
Sbjct: 134 VKGKVTGVERYGVFVQIAGTSGRSGRGLVPTAETATPRSADLKKHFTVGQDVEAKILNVD 193

Query: 679 DRGKIKLSMKV--VDQNTGK 696
           + GKI+LS+    VD+  G+
Sbjct: 194 ESGKIRLSISALRVDEERGQ 213


>gi|297582863|ref|YP_003698643.1| Tex-like protein protein-like protein [Bacillus selenitireducens
           MLS10]
 gi|297141320|gb|ADH98077.1| Tex-like protein protein-like protein [Bacillus selenitireducens
           MLS10]
          Length = 724

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 560 PDQIRNVIGMGGKVIRGI-VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           P+++    G G   IR I         +  D+ +  +  + + ++E             E
Sbjct: 601 PERLAETYGTGVPTIRDILSALVEPGRDPRDELSKPLLKTDVLQME-----------DLE 649

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
                +G V  V+DFGAFV     +DGLVH+S+L    V    DVV  GD V V +   D
Sbjct: 650 KGMELEGTVRNVVDFGAFVDIGVKQDGLVHVSKLRKGFVKNPMDVVNVGDVVTVWVDSVD 709

Query: 679 -DRGKIKLSM 687
             +G+I L+M
Sbjct: 710 VHKGRIALTM 719


>gi|4454544|gb|AAD20942.1| apoptosis-linked gene 4, F form [Mus musculus]
          Length = 225

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 57  EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 116

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 117 NVDESKQRMLLSLRLSD 133


>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
           JCM 11548]
 gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
           JCM 11548]
          Length = 274

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 93/268 (34%), Gaps = 45/268 (16%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                 ++ + +R ++  K  R+DGR+ + VR +  + G+++   GS+    G T  +  
Sbjct: 9   KRFISYLRREQIRRLIASKA-RIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAG 67

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           V +G  +                +++   LP A+     +G P    I   R+  R +  
Sbjct: 68  VKIGLGQP-----FPDAPDEGVLVVNAEVLPHASPYTE-VGPPDEFAIELARVVDRGLRH 121

Query: 412 V-------LPQTAQFPYTLRIVSEITESDG-------------------SSSMATVCGSS 445
                   L       Y L +   +   DG                    + +    G+ 
Sbjct: 122 CGYVDFKKLSVEGGKAYVLWVDLYVINDDGNLVDAANLAAVAALKNAALPAVVKDETGAV 181

Query: 446 LALMDAGVPI-----SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
               ++  P+       P+A +++G + +    ++  D   +E+               I
Sbjct: 182 KLDRNSRTPMPLDLEKAPIA-VSVGKIAN----VLFLDPIFEEELSLDGRITYTFAQERI 236

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGR 528
            A+Q  +  G  ++  +  AL  A RGR
Sbjct: 237 VAIQKTL--GSFTQQELEAALDLAWRGR 262



 Score = 41.8 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 44/229 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV--VYDRSLKDGQDFFPLTVNYQERTYAVG 71
           RP++++TG + + +DG+     G+T V+A V     +   D  D   L VN +   +A  
Sbjct: 39  RPVEVKTGVV-KTADGSAEVKLGKTHVVAGVKIGLGQPFPDAPDEGVLVVNAEVLPHASP 97

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRP---------LFSKCYKNETQVIINVMQHDL 122
               G       P E  I ++R++DR +R                     V + V+  D 
Sbjct: 98  YTEVGP------PDEFAIELARVVDRGLRHCGYVDFKKLSVEGGKAYVLWVDLYVINDDG 151

Query: 123 E-----------------SSPHVVSMVAASAALMLSGLPF-----EGPVVGAQVDYINGQ 160
                                 V     A      S  P      + P+    V  I   
Sbjct: 152 NLVDAANLAAVAALKNAALPAVVKDETGAVKLDRNSRTPMPLDLEKAPI-AVSVGKIANV 210

Query: 161 YVLNPRLDEDQGSLD--LFVSGTQDAVLMVELEANQLSEDVVLDAIIFG 207
             L+P  +E + SLD  +  +  Q+ ++ ++      ++  +  A+   
Sbjct: 211 LFLDPIFEE-ELSLDGRITYTFAQERIVAIQKTLGSFTQQELEAALDLA 258


>gi|71020931|ref|XP_760696.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
 gi|46100124|gb|EAK85357.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
          Length = 297

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 66/174 (37%), Gaps = 13/174 (7%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R    +R I  Q  L+    GSS    GD +    V  G R+    V     + + 
Sbjct: 38  RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSV-FGPRQ----VKGRQYSGKA 92

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGH-GRLARRAIHPVLPQTAQFPYTLRIVSEITE 431
           +  +   F P ++    R G  +  E  H   L  +A+ P L        +L I   + +
Sbjct: 93  ELNVEVKFAPFSSRRRRRPGKTT--ESAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQ 150

Query: 432 SDG---SSSMATVCGSSLALMDAGVPISKPVAGIA--MGLVKDGDDFIILSDIS 480
           +DG   S   A    ++ AL  AG+ +   V G    +    D  D  +L D S
Sbjct: 151 TDGLEESCIAAACIAATTALASAGIEMYGLVVGCVALVPSTTDSKDKQVLVDPS 204


>gi|113954120|ref|YP_731196.1| ribosomal protein S1 [Synechococcus sp. CC9311]
 gi|113881471|gb|ABI46429.1| Ribosomal protein S1 [Synechococcus sp. CC9311]
          Length = 401

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 108/276 (39%), Gaps = 34/276 (12%)

Query: 443 GSSLALMDAGVPIS---KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G+ LA +DA  P+    + V G  +G+  DG    +  DI G     G M     G   G
Sbjct: 113 GAFLAALDANEPVGTTGEVVTGTVIGMESDG----VYVDIGG--KAPGFMPKNECGL--G 164

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           +     +    G+   ++V   Q A          ++   S  +++  E   RV  + + 
Sbjct: 165 VITNLKERFPKGLEIEVLVTREQNADGMVTISCRALALRQSWDKVKQLEKDGRVSQVKVT 224

Query: 560 PDQIRNVI----GMGGKVIR----------GIVEQTGAKVNID-DDGTVKIASSSLAEIE 604
                 V     G+ G + R           +V +T     ++ +  T K+  S      
Sbjct: 225 GFNRGGVTCDLEGLRGFIPRSQLQDGENHETLVGKTLGVAFLEVNSETRKLVLSEKRAAT 284

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           AAR          E+ ++ +G V  +  +G FV   G   GL+H S ++   +    ++ 
Sbjct: 285 AAR------FSELEIGQLVEGHVAAIKPYGLFVDL-GGISGLLHQSAITGGSMRSMREIF 337

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            +GD V   + + D  RG+I L+  +++   G+ +V
Sbjct: 338 DQGDAVKALITELDPGRGRIALNTAMLEGQPGELLV 373


>gi|332638877|ref|ZP_08417740.1| transcriptional accessory protein [Weissella cibaria KACC 11862]
          Length = 727

 Score = 57.2 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG-DTVWVKLLD 676
           +     +G V  V+DFGAFV      DGLVHIS+++   V    ++V  G       +  
Sbjct: 651 KPGMQLQGTVRNVVDFGAFVDLGVHEDGLVHISRMAKRMVKNPHEIVAVGDIVTVWVVDV 710

Query: 677 FDDRGKIKLSMKVVDQN 693
              R +I LSM    +N
Sbjct: 711 DVKRERIGLSMVAPKEN 727


>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336572|sp|O26778|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
 gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 271

 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 103/266 (38%), Gaps = 37/266 (13%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           DI  ++ R  + D    K R+DGR     RDIS + G++ +  GSS    G+TQ IV V 
Sbjct: 6   DIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV- 64

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR------ 407
              +  E + D+    +    + +   LP A+      G P  R +   R+  R      
Sbjct: 65  -KPQIGEPFPDT---PEMGVILTNSELLPMASPTFEP-GPPDERSVELSRVVDRCIRESR 119

Query: 408 --AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----------I 455
              +  +        + L +   I + DG+   A V  +  AL+D  +P          I
Sbjct: 120 MIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVI 179

Query: 456 SK------PV--AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM 507
           ++      PV    +     K G++  I+ D S +E+ +      +  T+ G        
Sbjct: 180 NREKMQPLPVNRKALMCTFAKIGNE--IVLDPSLEEEDILTARISIGVTEEGSICAMQKG 237

Query: 508 KIGGISENIMVMALQQAKRGRLHILN 533
             G ++ + ++ A+  A      ++ 
Sbjct: 238 GEGPLTRDDVLKAVSIAVEKVPQLIE 263



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 87/239 (36%), Gaps = 38/239 (15%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R + +ETG I++ ++G+     G T ++  V      + G+ F P T            +
Sbjct: 35  RDISIETGVISK-AEGSSRVKLGNTQIIVGV----KPQIGEPF-PDTPEMGVILTNSELL 88

Query: 74  PGGYLRRESRP-TENEILISRMIDRSIRPL----FSKCYKNETQVIINV------MQHDL 122
           P      E  P  E  + +SR++DR IR        K    E   +  +      + +D 
Sbjct: 89  PMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDG 148

Query: 123 E-------------SSPHVVSMVAASAALMLS-----GLPFEGPVVGAQVDYINGQYVLN 164
                             + +       ++++      LP     +      I  + VL+
Sbjct: 149 NLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTFAKIGNEIVLD 208

Query: 165 PRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIEAISK 220
           P L+E+   +  + +  T++  +    +  +  L+ D VL A+     +   +IE + K
Sbjct: 209 PSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDK 267


>gi|332835295|ref|XP_508013.3| PREDICTED: protein RRP5 homolog [Pan troglodytes]
          Length = 1871

 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVINCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|325570064|ref|ZP_08145989.1| YhgF like protein [Enterococcus casseliflavus ATCC 12755]
 gi|325156892|gb|EGC69063.1| YhgF like protein [Enterococcus casseliflavus ATCC 12755]
          Length = 728

 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  V+DFGAFV     +DGLVH+S+LS   V    DVV  GD V V +   D  +G
Sbjct: 656 LKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHPKDVVSVGDVVTVWIEQVDVKKG 715

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+M  VD    K
Sbjct: 716 RISLTM--VDPGNAK 728


>gi|71651570|ref|XP_814460.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
           Brener]
 gi|70879434|gb|EAN92609.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
          Length = 285

 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 22/177 (12%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           M    +R DGR    +R    +   L +  GS+ + +G T  +  V  G     Q     
Sbjct: 1   MSRASLRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVN-GPVAARQ----- 54

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR------------AIHPVLP 414
              ++    ++ N        + R G   R  +   R+ +R            +I  V+ 
Sbjct: 55  EDYRKCGVQVYVNRAVR----IPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVR 110

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
                   L +   I   DG+           AL+DAGVP    VA +++  +   D
Sbjct: 111 LDQFPRCVLEVHVTILADDGALLSVATNALMCALLDAGVPCRTTVAAVSIVALTPED 167



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 26  QSDGAVLATYGETVVLATVVYD------RSLKDGQDFFPLTVNYQERTYAVGKIPGGYLR 79
           Q DG+   + G T V+A V            K G   +        R     ++     R
Sbjct: 28  QFDGSAWYSQGLTTVVAAVNGPVAARQEDYRKCGVQVYVNRAVRIPRAGGTDRLCVEEQR 87

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            E R  + E+ +             +  +   +V + ++  D   +   V+  A   AL+
Sbjct: 88  VEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDG--ALLSVATNALMCALL 145

Query: 140 LSGLPFEGPVVGAQV 154
            +G+P    V    +
Sbjct: 146 DAGVPCRTTVAAVSI 160


>gi|257875608|ref|ZP_05655261.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
 gi|257809774|gb|EEV38594.1| RNA binding protein S1 [Enterococcus casseliflavus EC20]
          Length = 728

 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  V+DFGAFV     +DGLVH+S+LS   V    DVV  GD V V +   D  +G
Sbjct: 656 LKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHPKDVVSVGDVVTVWIEQVDVKKG 715

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+M  VD    K
Sbjct: 716 RISLTM--VDPGNAK 728


>gi|1136430|dbj|BAA11502.1| KIAA0185 [Homo sapiens]
          Length = 1884

 Score = 57.2 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 712 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 771

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 772 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 814



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 493 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 552

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 553 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 612

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 613 EPSKERMLLSFKLSSDPEPK 632



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 453 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 512

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 513 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 546


>gi|257865981|ref|ZP_05645634.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257872314|ref|ZP_05651967.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
 gi|257799915|gb|EEV28967.1| RNA binding protein S1 [Enterococcus casseliflavus EC30]
 gi|257806478|gb|EEV35300.1| RNA binding protein S1 [Enterococcus casseliflavus EC10]
          Length = 728

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  V+DFGAFV     +DGLVH+S+LS   V    DVV  GD V V +   D  +G
Sbjct: 656 LKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHPKDVVSVGDVVTVWIEQVDVKKG 715

Query: 682 KIKLSMKVVDQNTGK 696
           +I L+M  VD    K
Sbjct: 716 RISLTM--VDPGNAK 728


>gi|119570024|gb|EAW49639.1| programmed cell death 11, isoform CRA_a [Homo sapiens]
          Length = 1872

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|168272922|dbj|BAG10300.1| RRP5 protein homolog [synthetic construct]
          Length = 1871

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|332531977|ref|ZP_08407861.1| 3'-to-5' exoribonuclease RNase R [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038604|gb|EGI75047.1| 3'-to-5' exoribonuclease RNase R [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 831

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 16/146 (10%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           I+ VI   G+   G    T  +V+   +        +        + ++       V + 
Sbjct: 583 IKAVIKAQGQQTSGEYAYTDDEVDQLGEQCSTTERRADDATREVADWLKCEFMQDHVGEE 642

Query: 623 YKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERV-----------AKTSDVVKEGDTV 670
           + G +  V +FG F+     + DGL+H++ L  E               +  V + GD V
Sbjct: 643 FDGVISSVTNFGLFIRLDDLQIDGLIHVTNLGDEFFAHDAAKHTLIGEHSHKVYRLGDKV 702

Query: 671 WVKLLDF--DDRGKIKLSMK-VVDQN 693
            VK+     DDR +I L++K  V Q+
Sbjct: 703 TVKVASVSLDDR-RINLTLKGDVAQD 727


>gi|255030816|ref|ZP_05302767.1| hypothetical protein LmonL_19961 [Listeria monocytogenes LO28]
          Length = 105

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 17  KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 75

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 76  GDVVTVWVDEVDTKKNRIALTM 97


>gi|70980549|ref|NP_055791.1| protein RRP5 homolog [Homo sapiens]
 gi|145559523|sp|Q14690|RRP5_HUMAN RecName: Full=Protein RRP5 homolog; AltName:
           Full=NF-kappa-B-binding protein; Short=NFBP; AltName:
           Full=Programmed cell death protein 11
 gi|55662191|emb|CAH71487.1| programmed cell death 11 [Homo sapiens]
 gi|55961127|emb|CAI16749.1| programmed cell death 11 [Homo sapiens]
 gi|55961865|emb|CAI15102.1| programmed cell death 11 [Homo sapiens]
 gi|119570026|gb|EAW49641.1| programmed cell death 11, isoform CRA_c [Homo sapiens]
 gi|225000512|gb|AAI72442.1| Programmed cell death 11 [synthetic construct]
          Length = 1871

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           +G V +                          +  G V  + D+G F+ F     GL   
Sbjct: 699 EGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPK 758

Query: 650 SQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 759 AIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSD 801



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|326520954|dbj|BAJ92840.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 507

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           E         +   + +G V K+  +GA +      R GL+H+S+++  ++   SD ++ 
Sbjct: 341 EKEAWAMLYLKEGALLEGTVRKLFPYGAQIRIGETNRSGLLHVSKITHGQLRSVSDALRV 400

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           G+ V   ++      +I LS++ ++   G
Sbjct: 401 GERVKALVIKSTTPDRIALSIRDLESEPG 429


>gi|326503538|dbj|BAJ86275.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 388

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKE 666
           E         +   + +G V K+  +GA +      R GL+H+S+++  ++   SD ++ 
Sbjct: 222 EKEAWAMLYLKEGALLEGTVRKLFPYGAQIRIGETNRSGLLHVSKITHGQLRSVSDALRV 281

Query: 667 GDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           G+ V   ++      +I LS++ ++   G
Sbjct: 282 GERVKALVIKSTTPDRIALSIRDLESEPG 310


>gi|226225422|ref|YP_002759528.1| transcription accessory protein [Gemmatimonas aurantiaca T-27]
 gi|226088613|dbj|BAH37058.1| transcription accessory protein [Gemmatimonas aurantiaca T-27]
          Length = 791

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
           E  A RE I+  +D+     + +G V  ++ FGAFV     +DGLVH+SQLS   +   +
Sbjct: 635 EPPAFREDIQKPSDLLPG-MVLEGVVTNIVAFGAFVDIGVHQDGLVHVSQLSDRYIKDAN 693

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
           DVVK G  V V + + D  R +I LSM+
Sbjct: 694 DVVKVGQKVKVTVQNVDLPRNRIALSMR 721


>gi|126465548|ref|YP_001040657.1| translation initiation factor IF-2 subunit alpha [Staphylothermus
           marinus F1]
 gi|166226222|sp|A3DM89|IF2A_STAMF RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|126014371|gb|ABN69749.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Staphylothermus marinus F1]
          Length = 267

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M     ++P V +     V ++ D+GA+V        +  +  S++++  V    DV++E
Sbjct: 1   MPIPRKELPNVGEYVIATVKEIFDYGAYVTLDEYNGLEAYLPWSEVASRWVRNIRDVIRE 60

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGK 696
              + VK++  + R K + +S+K V +N  +
Sbjct: 61  NQKIVVKVIRVNRRRKTVDVSLKKVPENEKR 91


>gi|90655436|gb|ABD96277.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
           Synechococcus GOM 3M9]
          Length = 423

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           +  T K+  S      AAR          EV ++ +GQV  V  +G F+   G   GL+H
Sbjct: 291 NSETRKLVLSEKRAAVAAR------FSELEVGQLVEGQVAAVKPYGLFIDL-GGISGLLH 343

Query: 649 ISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            S ++   +    +V  +GD V   + + D  RG+I L+  +++   G+ +V
Sbjct: 344 QSMITNGSLRSIREVFDQGDRVKAMITELDPGRGRIGLNTALLEGPPGELLV 395


>gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
 gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
          Length = 286

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 41/249 (16%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L+K   +D R   + R    +  +      S LF  G+TQ +  V L   E  Q     
Sbjct: 21  ILNKGFHVDRRPLTSYRSFEVKFNIAPNADSSVLFKLGNTQILAGVKL---EVGQPFPDS 77

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR--------AIHPVLPQTAQ 418
                      Y      T E    G P    I   R+  R        A+  ++    +
Sbjct: 78  PNEGILIVNAEYLPAASPTFE---PGPPDENAIELARVIDRGLREAKVIALDKLVIVPGK 134

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSSLALMDAGV-----------------------PI 455
             + + +   I + DG+   A+   S LAL    +                       P+
Sbjct: 135 RVWIVWLDIYILDHDGNLIDASAMASMLALATTFIPYYEVDPLTSNVKIDRTRKLQRLPL 194

Query: 456 SKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN 515
           ++ V  + +  + D    +++ D +G+E+ +      ++ ++ G       M IG ++E+
Sbjct: 195 NRYVVSVTVNKIGD----LLVIDPTGEEEAIASSKLAISISEEGNIVGIQKMGIGYVTED 250

Query: 516 IMVMALQQA 524
            +  A+  A
Sbjct: 251 DINKAIDIA 259



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 61/247 (24%)

Query: 23  IARQSDGAVLATYGETVVLATV---VY---DRSLKDGQDFFPLTVNYQERTYAVGKIPGG 76
           IA  +D +VL   G T +LA V   V      S  +G     L VN +    A      G
Sbjct: 45  IAPNADSSVLFKLGNTQILAGVKLEVGQPFPDSPNEGI----LIVNAEYLPAASPTFEPG 100

Query: 77  YLRRESRPTENEILISRMIDRSIRP---------LFSKCYKNETQVI---INVMQHDLES 124
                  P EN I ++R+IDR +R          +     +    ++   I ++ HD  +
Sbjct: 101 P------PDENAIELARVIDRGLREAKVIALDKLVIVPGKR--VWIVWLDIYILDHDG-N 151

Query: 125 SPHVVSMVAASAALMLSGLPF-----------------------EGPVVGAQVDYINGQY 161
                +M A+  AL  + +P+                          VV   V+ I    
Sbjct: 152 LIDASAM-ASMLALATTFIPYYEVDPLTSNVKIDRTRKLQRLPLNRYVVSVTVNKIGDLL 210

Query: 162 VLNPRLDEDQ---GSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAI 218
           V++P  +E+      L + +S   + V + ++    ++ED +  AI    +     I+ I
Sbjct: 211 VIDPTGEEEAIASSKLAISISEEGNIVGIQKMGIGYVTEDDINKAIDIALS---IGIDNI 267

Query: 219 SKLAKMC 225
            KL K+ 
Sbjct: 268 EKLKKII 274


>gi|116872299|ref|YP_849080.1| transcriptional accessory RNA-binding protein, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116741177|emb|CAK20299.1| transcriptional accessory RNA-binding protein, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 725

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 17/139 (12%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  +G+G + +R I+           D  +        E+ A   ++ +
Sbjct: 594 LQALSIPEEAEK--LGIGKETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 640

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 641 ISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 699

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V + + D  + +I L+M+
Sbjct: 700 TVWVDEVDTKKNRIALTMR 718


>gi|291543202|emb|CBL16311.1| Ribosomal protein S1 [Ruminococcus sp. 18P13]
          Length = 311

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 4/170 (2%)

Query: 524 AKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGA 583
           A+      + E    + +S   L    P ++ +    +    +     + I  I      
Sbjct: 27  AEAMERGTILEGRVTICDSSHNLWVELPGMQAVIPRKEGAVGIREGTTRDIALISRVNKP 86

Query: 584 KVNIDDDGTVKIASSSLAEIEAAREMIRSITD---VPEVNKIYKGQVVKVMDFGAFVHFC 640
              +  + T   A + LA +       R             I    V  +  FG FV   
Sbjct: 87  VCFVVTELTCDAAGAPLAILSRRIAQERCQAQYLDACRPGDILPACVTHLEPFGCFVDIG 146

Query: 641 GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
                L+ I  +S  R++  +D    G  + V +    +  KI L+ K +
Sbjct: 147 CGIPSLIPIDSISVSRISHPADRFTVGQQLRV-IFKGREGKKILLTHKEL 195


>gi|156103011|ref|XP_001617198.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148806072|gb|EDL47471.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1162

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 79/227 (34%), Gaps = 12/227 (5%)

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDS--GITAMQMDMKIGGISENIMVMALQ-QAKRGRL 529
           ++ ++     E H   M + +        +    +        E I++     Q      
Sbjct: 626 YVDINYAFYAELHEDQMPYNIKNIKDVFKVNDKLIFEIYKMYPEKILLTLKNIQKVNDLN 685

Query: 530 HILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVE-QTGAKVN-- 586
            IL+   + +      +   T     +++  + I   I +     +   + +   K+   
Sbjct: 686 KILHYKMQDVP---FDVKVVTVLKNGISVSYNDIYAFIHISALSSKYKSKVEENEKIQES 742

Query: 587 -IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            ++    V     +                   +  I   +++ +  +G  V  C    G
Sbjct: 743 LVNQKIKVICTDMNKLNFSNLIYEQNEQLKKMNIYDIVHVEIIHISKYGLMVK-CEDIVG 801

Query: 646 LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           L+HIS++S +++   ++  K GD +   L++ D D  +  LS K+++
Sbjct: 802 LIHISEISKKKIDDLNEFFKIGDQLKGVLINIDYDNKRFSLSTKILE 848


>gi|218441837|ref|YP_002380166.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
 gi|218174565|gb|ACK73298.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
          Length = 718

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G +  V++FGAFV     +DGLVHISQ++   ++    VVK G  V V++++ 
Sbjct: 644 KEGMLLEGIITNVVNFGAFVDVGVHQDGLVHISQIADHFISDPKQVVKVGQVVKVRVMEV 703

Query: 678 DDR-GKIKLSMKVVD 691
           +++  +I LSMK  +
Sbjct: 704 NEKLRRISLSMKEAN 718


>gi|33863501|ref|NP_895061.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9313]
 gi|33640950|emb|CAE21408.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
           marinus str. MIT 9313]
          Length = 421

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S      AAR          EV ++ +GQVV V  +G F+   G   GL+H S 
Sbjct: 292 TRKLVLSEKRAATAAR------FSELEVGQLVEGQVVAVKPYGFFIDL-GGVSGLLHQSM 344

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           ++   +    +V  +GD V   + + D  RG+I L+  +++   G+ ++
Sbjct: 345 ITGGSLRSLREVFNQGDRVKALITEMDPGRGRIALNTALLEGQPGELLI 393


>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
 gi|29337009|sp|Q9V118|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
 gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
          Length = 274

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 42/280 (15%)

Query: 296 EDIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV- 351
            +I A ++R  +++   +  R+D R  E  R I  +VG++++  GS+L   G TQ +V  
Sbjct: 4   NEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGI 63

Query: 352 -VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
             +LG    E + D+           +   +P A+      G P  R I   R+  R I 
Sbjct: 64  KTSLG----EPFPDT---PNMGVMTTNVELVPLASPTFEP-GPPDERAIELARVIDRGIR 115

Query: 411 PVLPQTAQFP--------YTLRIVSEITESDGSSSMATVCG------------------- 443
                  +            + I   + + DG+   A                       
Sbjct: 116 ESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEET 175

Query: 444 SSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
             +  +D   P+  PV  I + +       I++ D S DE+ +      +   ++G  + 
Sbjct: 176 GEVETLDETEPL--PVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISA 233

Query: 504 QMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
               + G      ++ A++ A +    I   + + + +++
Sbjct: 234 VQKSEGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKAK 273



 Score = 44.5 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 83/247 (33%), Gaps = 41/247 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           RP+++E G I + ++G+ L   G T VL  +             FP T N    T  V  
Sbjct: 34  RPIEIEVGVIEK-AEGSALVKLGSTQVLVGIKTSLGEP------FPDTPNMGVMTTNVEL 86

Query: 73  IPGGYLRRESRP-TENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
           +P      E  P  E  I ++R+IDR IR           +          + ++V+ HD
Sbjct: 87  VPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHD 146

Query: 122 LESS----------------PHVVSMVAASAALMLSG---LPFEGPVVGAQVDYINGQYV 162
                               P V           L     LP E   V      I    V
Sbjct: 147 GNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGNILV 206

Query: 163 LNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++P LDE+    G + +    T     + + E      + V+ A+     + + + + I 
Sbjct: 207 VDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKLIL 266

Query: 220 KLAKMCA 226
           +  +   
Sbjct: 267 EAVEKAK 273


>gi|123427505|ref|XP_001307267.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
 gi|121888886|gb|EAX94337.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
          Length = 203

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 72/214 (33%), Gaps = 34/214 (15%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE--QYVDSLSGTQRNDFMMHYNFLP 382
           I  ++G ++   GS+     DT+    V  G  E E  Q   +L+G         +    
Sbjct: 5   IGVRLGDIKGAAGSAYVELNDTKVFAAV-YGPMEPENQQQDSALTGIVDCIIEDAWQ--- 60

Query: 383 CATGEVSRMGAPSRREIGHGRLARR---AIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
                             +  L  +        +     F   +RI   I E       A
Sbjct: 61  --------------NTKEYDALCHKLLHTFSSTIFHKKYFKTLIRISITILEKGELVQDA 106

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           T    SLAL+DAG+ +   V     GLV     F+  +           +   +  + + 
Sbjct: 107 TTLAGSLALIDAGIEMKDFVVSCNCGLV--DGKFLPFT------SSPRSVRVAILPSTNE 158

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I   ++   IG IS + M  A+  A  G L+++ 
Sbjct: 159 IVETEV---IGRISPDEMKEAVHTATDGCLNLIE 189



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 17/198 (8%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           + G+      +T V A V      ++ Q    LT          G +            E
Sbjct: 15  AAGSAYVELNDTKVFAAVYGPMEPENQQQDSALT----------GIVDCIIEDAWQNTKE 64

Query: 87  NEILISRMIDRSIRPLFSKCYKNE-TQVIINVMQHDLESSPHVVSMVAASAALMLSGLPF 145
            + L  +++      +F K Y     ++ I ++  +        + +A S AL+ +G+  
Sbjct: 65  YDALCHKLLHTFSSTIFHKKYFKTLIRISITIL--EKGELVQDATTLAGSLALIDAGIEM 122

Query: 146 EGPVVGAQVDYINGQYVLNPRLDEDQGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAII 205
           +  VV      ++G+++          S+ + +  + + ++  E+    +S D + +A+ 
Sbjct: 123 KDFVVSCNCGLVDGKFLPFTSSP---RSVRVAILPSTNEIVETEVIGR-ISPDEMKEAVH 178

Query: 206 FGHNECKPVIEAISKLAK 223
              + C  +IE+I    K
Sbjct: 179 TATDGCLNLIESIRGYFK 196


>gi|16799970|ref|NP_470238.1| hypothetical protein lin0897 [Listeria innocua Clip11262]
 gi|16413347|emb|CAC96129.1| lin0897 [Listeria innocua Clip11262]
          Length = 725

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 17/142 (11%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  +G+G + +R I+           D  +        E+ A   ++ +
Sbjct: 594 LQALSIPEEAEK--LGIGKETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 640

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 641 ISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 699

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            V + + D  + +I L+M+  D
Sbjct: 700 TVWVDEVDTKKNRIALTMRNPD 721


>gi|313638705|gb|EFS03809.1| protein YhgF [Listeria seeligeri FSL S4-171]
          Length = 471

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 17/139 (12%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  IG   + +R I+           D  +        E+ A   ++ +
Sbjct: 340 LQALSIPEEAEKLAIGK--ETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 386

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 387 ISMDDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 445

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V + + D  + +I L+M+
Sbjct: 446 TVWVDEVDTKKNRIALTMR 464


>gi|156839667|ref|XP_001643522.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114136|gb|EDO15664.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 223

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 22/212 (10%)

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           +GLL    GSS     DT+ I  VT G  E +   +  +       +             
Sbjct: 7   IGLLTEVDGSSQVECEDTKVICAVT-GPIEPKARQELPTQLALEIIV------------R 53

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS-------MATV 441
              G PS RE       R  I P++          +I  +I ES  S            +
Sbjct: 54  PAKGVPSTREKLMEDRLRSVITPIVSLYQYPRKLCQITCQILESGESEYEFSQKELSCCI 113

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISG--DEDHLGHMDFKVAGTDSG 499
             + LAL+D+G+ ++   + ++M ++K  DD II    S       +  +  ++      
Sbjct: 114 NATLLALIDSGLALNSIASSVSMAILKGSDDVIINPTNSQLLQSQSVHVLALQLIEGSRK 173

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHI 531
           +  +      G  +E  +   L+  ++  L +
Sbjct: 174 VKNVLFLDSSGDFTEQQLFNVLEIGEKSCLEL 205



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 35/207 (16%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQD---FFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+      +T V+  V      K  Q+      L +  +                +  P
Sbjct: 14  DGSSQVECEDTKVICAVTGPIEPKARQELPTQLALEIIVRPA--------------KGVP 59

Query: 85  TENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQHDLESSPHV------VSMVAASA 136
           +  E L+   +   I P+    +  +   Q+   +++   ES            + A   
Sbjct: 60  STREKLMEDRLRSVITPIVSLYQYPRKLCQITCQILES-GESEYEFSQKELSCCINATLL 118

Query: 137 ALMLSGLPFEGPVVGAQVDYING--QYVLNPRLDEDQGS-------LDLFVSGTQDAVLM 187
           AL+ SGL          +  + G    ++NP   +   S       L L     +   ++
Sbjct: 119 ALIDSGLALNSIASSVSMAILKGSDDVIINPTNSQLLQSQSVHVLALQLIEGSRKVKNVL 178

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPV 214
               +   +E  + + +  G   C  +
Sbjct: 179 FLDSSGDFTEQQLFNVLEIGEKSCLEL 205


>gi|313619754|gb|EFR91362.1| protein YhgF [Listeria innocua FSL S4-378]
          Length = 725

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 17/142 (11%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  +G+G + +R I+           D  +        E+ A   ++ +
Sbjct: 594 LQALSIPEEAEK--LGIGKETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 640

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 641 ISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 699

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            V + + D  + +I L+M+  D
Sbjct: 700 TVWVDEVDTKKNRIALTMRNPD 721


>gi|313634101|gb|EFS00768.1| protein YhgF [Listeria seeligeri FSL N1-067]
          Length = 465

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 17/139 (12%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  IG   + +R I+           D  +        E+ A   ++ +
Sbjct: 334 LQALSIPEEAEKLAIGK--ETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 380

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 381 ISMDDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 439

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V + + D  + +I L+M+
Sbjct: 440 TVWVDEVDTKKNRIALTMR 458


>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
           DSM 2374]
 gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
           DSM 2374]
          Length = 265

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 41/259 (15%)

Query: 297 DIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
           DI  ++ +  +++      R DGR+ +  RDIS + G++ +  GS+    GDTQ IV   
Sbjct: 6   DIVPEITKESIINLAVNDKREDGRELDEYRDISIETGVISKAEGSARVKIGDTQVIVG-- 63

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH--- 410
           +  +    + D+         M +   LP A       G PS   I   R+  R I    
Sbjct: 64  IKPQIGAPFPDT---PDLGVLMTNCEMLPMADPTFEP-GPPSEDSIELARVVDRGIRESE 119

Query: 411 -----PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDA-------------- 451
                 +  +  +  + L I   I ++ G+   A       AL                 
Sbjct: 120 LVDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVL 179

Query: 452 ------GVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQM 505
                  +PI+  VA      VK GD   ++ D + +E+ +      V  T  G      
Sbjct: 180 DHENTIDLPINNEVA--MCTFVKIGDK--LILDPTLNEEKVASARLNVGVTKDGNICAMQ 235

Query: 506 DMKIGGISENIMVMALQQA 524
              I  +++  +   + +A
Sbjct: 236 KGGILPLTKEDIFYCVDKA 254



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 42/237 (17%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGK 72
           R + +ETG I++ ++G+     G+T V+  +      K      FP T +          
Sbjct: 35  RDISIETGVISK-AEGSARVKIGDTQVIVGI------KPQIGAPFPDTPDLGVLMTNCEM 87

Query: 73  IPGGYLRRESRP-TENEILISRMIDRSIRPL----FSKCYKNETQVIINVMQHDLES--- 124
           +P      E  P +E+ I ++R++DR IR        K    E + +  +   DL     
Sbjct: 88  LPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF-IDLHIIDN 146

Query: 125 -----SPHVVSMVAA-------SAALMLS----------GLPFEGPVVGAQVDYINGQYV 162
                    ++++AA       SA++              LP    V       I  + +
Sbjct: 147 CGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTFVKIGDKLI 206

Query: 163 LNPRLDEDQ-GSLDLFVSGTQDAVLMVELEANQ--LSEDVVLDAIIFGHNECKPVIE 216
           L+P L+E++  S  L V  T+D  +    +     L+++ +   +    ++ K ++E
Sbjct: 207 LDPTLNEEKVASARLNVGVTKDGNICAMQKGGILPLTKEDIFYCVDKAVSKTKELVE 263


>gi|119570025|gb|EAW49640.1| programmed cell death 11, isoform CRA_b [Homo sapiens]
          Length = 1872

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ 
Sbjct: 725 EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 784

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 785 NVDEEKQRMLLSLRLSD 801



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|255018029|ref|ZP_05290155.1| hypothetical protein LmonF_10391 [Listeria monocytogenes FSL
           F2-515]
          Length = 301

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 17/138 (12%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  IG   + +R I+           D  +        E+ A   ++ +
Sbjct: 170 LQALSIPEEAEKLTIGK--ETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 216

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 217 ISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 275

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V + + D  + +I L+M
Sbjct: 276 TVWVDEVDTKKNRIALTM 293


>gi|159903074|ref|YP_001550418.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888250|gb|ABX08464.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9211]
          Length = 416

 Score = 56.8 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           + ++ D   K+  S      AAR          E+ +I  G+++ +  +G FV   G   
Sbjct: 280 IEVNPDSR-KLILSEKKAATAAR------FAELEIGQIVAGEILAIKPYGFFVDL-GGVS 331

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           GL+H S ++   +    +V  +G+++   + D D  RG+I L+  +++   G+ +V
Sbjct: 332 GLLHQSMITNGSIRSLREVFSQGESIKALITDLDPKRGRIGLNTALLEGPPGEILV 387


>gi|313624453|gb|EFR94460.1| protein YhgF [Listeria innocua FSL J1-023]
          Length = 725

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 17/142 (11%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  +G+G + +R I+           D  +        E+ A   ++ +
Sbjct: 594 LQALSIPEEAEK--LGIGKETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 640

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 641 ISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 699

Query: 671 WVKLLDFD-DRGKIKLSMKVVD 691
            V + + D  + +I L+M+  D
Sbjct: 700 TVWVDEVDTKKNRIALTMRNPD 721


>gi|296221140|ref|XP_002756467.1| PREDICTED: protein RRP5 homolog [Callithrix jacchus]
          Length = 2108

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616  VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                  +  G V  + D+G F+ F     GL   + +S + V  TS+   EG TV  K+ 
Sbjct: 964  EIHPGMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSEHFVEGQTVVAKVT 1023

Query: 676  DFD-DRGKIKLSMKVVD 691
            + D ++ ++ LS+++ D
Sbjct: 1024 NVDEEKQRMLLSLRLSD 1040



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +P   + +++    +    I ++   +V + D    K+  +    +  ++    +     
Sbjct: 719 VPHMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVESKLPAITCFADA 778

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 779 KPGLQTHGFIIRVKDYGCIVKFYSDVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNS 838

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K++     K
Sbjct: 839 EPSKERMLLSFKLLRDPEPK 858



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 679 IEAQYLRYHDIKPGAVVKGTVLTIKPYGMLVKVGEQMRGLVPHMHLADILMKNPEKKYHI 738

Query: 667 GDTVWVKLLDFDDRGK 682
           GD V  ++L  D   K
Sbjct: 739 GDEVKCRVLLCDPEAK 754


>gi|4454542|gb|AAD20941.1| apoptosis-linked gene 4, deltaC form [Mus musculus]
          Length = 768

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 332 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 391

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 392 NVDESKQRMLLSLRLSD 408



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LS   +     V   G  V V +L  +  + ++
Sbjct: 154 GVIIRVKDYGCIVKFYNDLQGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERM 213

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 214 LLSFRLLSDSRPKD 227



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 55  HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 114

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 115 LLCDPEAK 122


>gi|332212080|ref|XP_003255151.1| PREDICTED: protein RRP5 homolog [Nomascus leucogenys]
          Length = 1804

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ 
Sbjct: 657 EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 716

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 717 NVDEEKQRMLLSLRLSD 733



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 477 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 536

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 537 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNC 596

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 597 EPSKERMLLSFKLSSDPEPK 616



 Score = 44.5 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         +   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 437 IEAQYLRYHDIQPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 496

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 497 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 530


>gi|198413904|ref|XP_002123749.1| PREDICTED: similar to Protein RRP5 homolog (Programmed cell death
           protein 11) [Ciona intestinalis]
          Length = 1581

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           I   G VIR  V  + AK          +  +    +  ++  I +  DV + + +  G 
Sbjct: 50  IFNEGNVIRCRVLTSSAK-------RRHLHLTHKQSLVGSKLPIVTNYDVIKRDDVIHGF 102

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           +  +  FG FV F     G V   QLS   V     +   G  V  +++  D    K+KL
Sbjct: 103 ISNIKPFGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISNDAGNKKLKL 162

Query: 686 SMKVVDQ 692
           S + +++
Sbjct: 163 SFRTMNE 169



 Score = 44.5 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF- 677
           + ++ +  V ++  +G FV   G   GL   S +  + +A  +D    G +V   +    
Sbjct: 273 IGQLLRCFVRQITSYGVFVETVGGLVGLCPKSAICDKYLADVNDRFITGQSVVAVVTGIE 332

Query: 678 DDRGKIKLSMK 688
           DDR +  +S++
Sbjct: 333 DDRKRFLVSLR 343



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 592  TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
            T++ +           +         +  +I++G +    + G FV       G V  + 
Sbjct: 1100 TMRKSLMHEICDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVTFAN 1159

Query: 652  LSTERVAKTSDVVKE---GDTVWVKLLDFDDR-GKIKLSMKVVDQNTG 695
             S   ++  ++ +K    G  V   ++    + G+++LSM  ++++TG
Sbjct: 1160 ASKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSM--LERDTG 1205



 Score = 37.2 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 622  IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
            +  G++ +++  GA V       G +  + +S E +       + G  +  +++   + G
Sbjct: 1037 VTNGEIREIVADGALVRMELRGKGKIFSTDISDEFLDGMLKNFRVGQIIRCRVIGRSNEG 1096

Query: 682  KIKLSMK 688
             + L+M+
Sbjct: 1097 FV-LTMR 1102


>gi|297301793|ref|XP_001105950.2| PREDICTED: protein RRP5 homolog [Macaca mulatta]
          Length = 1858

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
                 +  G V  + D+G F+ F     GL   + +S + V  TSD   EG TV  K+ 
Sbjct: 712 EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 771

Query: 676 DFD-DRGKIKLSMKVVD 691
           + D ++ ++ LS+++ D
Sbjct: 772 NVDEEKQRMLLSLRLSD 788



 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 467 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADA 526

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 527 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNC 586

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 587 EPSKERMLLSFKLSSDPEPK 606



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 427 IEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 486

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 487 GDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVI 520


>gi|74025204|ref|XP_829168.1| exosome-associated protein 4 [Trypanosoma brucei TREU927]
 gi|70834554|gb|EAN80056.1| exosome-associated protein 4 [Trypanosoma brucei]
          Length = 227

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 9/190 (4%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           +     R  + VR     + +L +++ S+    G T+ +  V       +Q +D   G+ 
Sbjct: 2   ERSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAV----HHPQQLIDEYRGS- 56

Query: 371 RNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEIT 430
           R            A        A    E          +   +         + +  EI 
Sbjct: 57  RGRVACTVRRSSRAQKHELAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVAVEIL 116

Query: 431 ESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMD 490
             DG    A   G   AL   G  +    +     L+ DG    I++D S  E +     
Sbjct: 117 AEDGGLWDAIATGVCAALASGGFEMYDTFSACGAALLPDGS---IVTDPSATEWNTAKAT 173

Query: 491 -FKVAGTDSG 499
               A  +SG
Sbjct: 174 AVTCAMLNSG 183


>gi|321472785|gb|EFX83754.1| hypothetical protein DAPPUDRAFT_301661 [Daphnia pulex]
          Length = 888

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +  +G++  V DFGAFV     +D L+H S++  ++     + +   + ++VK+L  
Sbjct: 822 KVGQELRGRINNVTDFGAFVDIGVGKDALLHSSRMKGKK-----ESLSVTNQIYVKVLSI 876

Query: 678 D-DRGKIKLSM 687
           D  + +I L +
Sbjct: 877 DVSQQRISLEL 887


>gi|84490305|ref|YP_448537.1| translation initiation factor IF-2 subunit alpha [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731076|sp|Q2NE59|IF2A_METST RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|84373624|gb|ABC57894.1| putative translation initiation factor 2, alpha subunit
           (aIF-2-alpha) (eIF2A) [Methanosphaera stadtmanae DSM
           3091]
          Length = 260

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + PE   +  G V KV+ +GAF        ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRMSKEWPEEGDLIVGTVHKVLGYGAFAKLEEYEGKEAFIHISEVSSGWVKNIRDYVRE 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
              +  ++L  +  +G +  S+K + ++
Sbjct: 61  NQKIVARVLRVNPKKGHVDASLKRIRED 88


>gi|319790655|ref|YP_004152288.1| RNA binding S1 domain protein [Thermovibrio ammonificans HB-1]
 gi|317115157|gb|ADU97647.1| RNA binding S1 domain protein [Thermovibrio ammonificans HB-1]
          Length = 339

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           V I+   L E E A++   ++  + E  +I +G V  ++DFG FV      DGLVH S +
Sbjct: 159 VVISRRKLLEEERAKKRKETLKRLKEG-EIVEGTVKNIVDFGIFVDV-DGVDGLVHKSDI 216

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S   +    DV + GD + VK+   + D+ ++ LS+K    +  + I
Sbjct: 217 SWSGLKTPFDVAQIGDKIKVKIKKIERDKERLVLSLKETRPDPWERI 263


>gi|153791339|ref|NP_001093283.1| mRNA transport regulator 3 [Bombyx mori]
 gi|95103116|gb|ABF51499.1| mRNA transport regulator 3 [Bombyx mori]
          Length = 268

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 11/235 (4%)

Query: 327 AQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATG 386
           A+  ++ +  GS+      T+ +  V    RE           Q         F P +  
Sbjct: 19  ARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE---IPHQNEFRQLGQLYCEVKFAPFSCP 74

Query: 387 EVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSL 446
              R   P   E       R+A+ P + +     Y + ++  I E DGS   A +  + L
Sbjct: 75  RKRRPYVPDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAINAAGL 134

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           AL +A VP+   +   ++ ++       +  D    E+H+          + GI  M + 
Sbjct: 135 ALANAAVPMFDIITSCSVAVI----GHQMFIDPPEIEEHIAK---NSTEVNPGIITMSVL 187

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPD 561
            ++  IS+   + ++      ++  +      +    +Q       V+   +   
Sbjct: 188 SQLKQISDFTQIGSMDVECVTKVMEVLLKECEIIVPNIQRVLVVDVVKNFELKKH 242



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT 85
           Q+ G+      +T V+ +V   R +    +F  L   Y E  +A    P    RR   P 
Sbjct: 26  QAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPR--KRRPYVPD 83

Query: 86  ENEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLSGL 143
             E  +S  + +++ P   + +  + Q+  +I +++HD       ++    + A     +
Sbjct: 84  VEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAINAAGLALANAA--V 141

Query: 144 PFEGPVVGAQVDYINGQYVLNPRLDED 170
           P    +    V  I  Q  ++P   E+
Sbjct: 142 PMFDIITSCSVAVIGHQMFIDPPEIEE 168


>gi|145344813|ref|XP_001416919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577145|gb|ABO95212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 260

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 16/186 (8%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R DGR SE +R        +   HGS+ +    T  IVV T+     ++        +R 
Sbjct: 8   RGDGRSSEMLRRQRLHRHYVAGAHGSAEYAIDGT--IVVATV--HGPQKVKPWREEVERG 63

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
                       T E  R               R AI   + +       LR  + I   
Sbjct: 64  IVEFELTSASGMTREEER---------ACEARVRGAIEATVVRYDFPRLGLRATARIVSD 114

Query: 433 DGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFK 492
           DG++  A V     AL+DA V +   +   A  ++ DG   I   D +  E++      +
Sbjct: 115 DGNAEAACVNALCCALIDADVAMHGLICANACAILSDGTKVI---DPTKREENEARAVVR 171

Query: 493 VAGTDS 498
                 
Sbjct: 172 ACALSK 177



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           + G+       T+V+ATV   + +K  ++     +   E T A G              E
Sbjct: 30  AHGSAEYAIDGTIVVATVHGPQKVKPWREEVERGIVEFELTSASGMTR-----------E 78

Query: 87  NEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
            E      +  +I          +   +    ++  D         + A   AL+ + + 
Sbjct: 79  EERACEARVRGAIEATVVRYDFPRLGLRATARIVSDDGN--AEAACVNALCCALIDADVA 136

Query: 145 FEGPVVG-AQVDYINGQYVLNPRLDEDQGSLDLFVSGT-------QDAVLMVELEANQLS 196
             G +   A     +G  V++P   E+  +  +  +         ++  ++       L+
Sbjct: 137 MHGLICANACAILSDGTKVIDPTKREENEARAVVRACALSKYREKEEIAIVGCSTTGALT 196

Query: 197 EDVVLDAIIFGHNECKPVIEAISKLAKMCAKE 228
           E+  L++I F  +    V+    K       E
Sbjct: 197 EEEYLESIAFIVDATASVVNFQKKSIARFELE 228


>gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 271

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 105/278 (37%), Gaps = 39/278 (14%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           SV +D++   +  ++ ++  R+DGR  +  R +  +V  + + +GS+    GD++ +  V
Sbjct: 5   SVIDDLKKSQILELL-EQGKRVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEVVCGV 63

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP- 411
            +    D  + D      +  F+     LP +   V   G P    I   R+  R I   
Sbjct: 64  KIQP--DRPFPDM---GDKGIFICTAELLPLSHPSVE-TGPPGPDVIELARVVDRGIRES 117

Query: 412 -VLPQT----AQFPYTLRIVSE--ITESDGSSSMATVCGSSLALM--------------- 449
            ++  +     +    + + ++  + + DG+   A    ++ AL+               
Sbjct: 118 HMIDLSQLVIEKNKSVVGVFADNVVVDYDGNLFDACAYAATAALLSSKSPKWEMQNDVPT 177

Query: 450 -----DAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQ 504
                ++ VPI+     + MG + +     I+ D +GDE         +    +G     
Sbjct: 178 LVEGGESEVPITTIPVSVTMGKIGN----HIIVDPNGDEWDSMDARITITTDSNGNICAL 233

Query: 505 MDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
               IGG S   ++   + + +    I  ++ +    +
Sbjct: 234 QKGGIGGFSFEEVIKCGELSVKVGSKIREKLKQAKGGA 271


>gi|157105173|ref|XP_001648750.1| S1 RNA binding domain protein, putative [Aedes aegypti]
 gi|108880171|gb|EAT44396.1| S1 RNA binding domain protein, putative [Aedes aegypti]
          Length = 968

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 9/112 (8%)

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG 634
              +E+    ++      ++   + + +    ++ + S++D+ E   +  G V  V DFG
Sbjct: 859 NQTIERIECVLSALQRELLRDYRADINKPPMFKKGLTSMSDLAEG-TVLTGAVNNVTDFG 917

Query: 635 AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
           AFV      +GL+H S+++  RV         GD V V +L  D  +G++ L
Sbjct: 918 AFVDIGVENNGLIHRSKMNGMRVN-------IGDQVEVTVLSIDVGKGRLGL 962


>gi|74190944|dbj|BAE28246.1| unnamed protein product [Mus musculus]
          Length = 1414

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 725 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 785 NVDESKQRMLLSLRLSD 801



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LST+ +     V   G  V V +L  +  + ++
Sbjct: 547 GVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 607 LLSFRLLSDSRPKD 620



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 508 LLCDPEAK 515


>gi|74183408|dbj|BAE36581.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 725 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 785 NVDESKQRMLLSLRLSD 801



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LST+ +     V   G  V V +L  +  + ++
Sbjct: 547 GVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 607 LLSFRLLSDSRPKD 620



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 508 LLCDPEAK 515


>gi|319654666|ref|ZP_08008745.1| transcription accessory protein [Bacillus sp. 2_A_57_CT2]
 gi|317393582|gb|EFV74341.1| transcription accessory protein [Bacillus sp. 2_A_57_CT2]
          Length = 725

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 139/362 (38%), Gaps = 51/362 (14%)

Query: 356 TREDEQYV-DSLSGTQRNDFMMHYNFL---PCATGEVSRMGAPSRREIGHGRL--ARRAI 409
           +RE EQ++ D L   +   F +  N       +  +++R   P  +      +  ARR  
Sbjct: 390 SRETEQFIADILKDMKEEIFYLIVNEAGASVYSASDLAREEFPDFQVEERSAVSIARRLQ 449

Query: 410 HPVLPQTAQFPYTLRI---------------VSEITESDGSSSMATVCGSSLALMDAGVP 454
            P+       P ++ +               +S + E+  +     V  +S +L+     
Sbjct: 450 DPLAELVKIDPKSVGVGQYQHDVSQKKLSESLSFVVETAVNQVGVNVNTASSSLLQHVAG 509

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           +SK VA   +   ++   F     +      LG   ++ A     I   +  +   GI  
Sbjct: 510 LSKTVAVNIIKKREEEGKFTDRKQLKKIPR-LGAKTYEQAIGFLRIIDGKEPLDRTGIHP 568

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVI 574
                           ++N++   L      LG  + R  +  I   Q    + +G   +
Sbjct: 569 ETYA------------VVNKLLANLGFKSSDLGTQSLREALKGINISQTARELEIGELTL 616

Query: 575 RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITDVPEVNKIYKGQVVKVMD 632
           R I+           D  ++       E+     ++ +  + D+ E  ++ +G V  V+D
Sbjct: 617 RDII-----------DALMRPERDPRDELPKPLLKKEVLKLEDLQEGMEL-QGTVRNVVD 664

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691
           FGAFV     +DGLVHIS+LS + V    DVV  GD V V +   D  +G++ L+M  +D
Sbjct: 665 FGAFVDIGVKQDGLVHISKLSRQFVKHPLDVVSVGDVVTVWVDSVDKHKGRVALTM--LD 722

Query: 692 QN 693
           Q 
Sbjct: 723 QT 724


>gi|194374585|dbj|BAG57188.1| unnamed protein product [Homo sapiens]
          Length = 771

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +PP  + +++    +    I ++   +V + D    K+  +    +  ++  + +     
Sbjct: 480 VPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA 539

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +      G +++V D+G  V F     GLV   +LSTE +     V   G  V V +L+ 
Sbjct: 540 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 678 DD-RGKIKLSMKVVDQNTGK 696
           +  + ++ LS K+      K
Sbjct: 600 EPSKERMLLSFKLSSDPEPK 619



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            E         E   + KG V+ +  +G  V       GLV    L+   +         
Sbjct: 440 IEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHI 499

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGKPIV 699
           GD V  ++L  D    K+ +++K     +  P++
Sbjct: 500 GDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVI 533


>gi|224475925|ref|YP_002633531.1| putative ribonuclease R [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420532|emb|CAL27346.1| putative ribonuclease R [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 785

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T      ++       E+ ++   +  + + Y+G +  V +FG FV      +G+VH+
Sbjct: 601 EHTSNRERRAIEAERDTDELKKAEFMLQHIGEEYEGIISSVANFGMFVELPNTVEGMVHV 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S ++ +              ++ +V + GD+V +K+++ D   ++
Sbjct: 661 SNMTDDYYQFAEGQMAMIGERSGNVFRIGDSVKIKVVNVDVEQRM 705


>gi|123968121|ref|YP_001008979.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. AS9601]
 gi|123198231|gb|ABM69872.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. AS9601]
          Length = 401

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G+V+ V  +G F+   GA  GL+H S L+   +    +V +EG+ +   + + 
Sbjct: 293 ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTNGSIRSLREVFREGEVIKALISEI 351

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D ++G+I L+  +++ + G+ I+
Sbjct: 352 DLEKGRIGLNTALLENSAGELII 374


>gi|268325739|emb|CBH39327.1| DNA-directed RNA polymerase, subunit E [uncultured archaeon]
          Length = 207

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 30/133 (22%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I+ IV+    ++ I D G                    ++   P++ +I +G VV++++F
Sbjct: 48  IQDIVDVKEGRIMIGDAGVYYETI------------FDALVFRPKMQEIVEGGVVEIVEF 95

Query: 634 GAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           GAFV      DGL+HISQ++ E +             TS  + EGD V  ++  +  ++R
Sbjct: 96  GAFVEIGP-LDGLLHISQITDEYISYDEKGAKLVTKDTSRTLGEGDKVRARIVAISLNER 154

Query: 681 ----GKIKLSMKV 689
                KI L+M+ 
Sbjct: 155 DPGDSKIGLTMRQ 167


>gi|257082728|ref|ZP_05577089.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
 gi|256990758|gb|EEU78060.1| RNA binding protein S1 [Enterococcus faecalis E1Sol]
          Length = 730

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|256762307|ref|ZP_05502887.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
 gi|256683558|gb|EEU23253.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T3]
          Length = 730

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
 gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
          Length = 274

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 296 EDIQAKVVRTVMLD---KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV- 351
            +I A ++R  +++   +  R+D R  E  R IS +VG++++  GS+L   G+TQ +V  
Sbjct: 4   NEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGI 63

Query: 352 -VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH 410
             TLG    E + D+           +   +P A+      G P  R I   R+  R I 
Sbjct: 64  KTTLG----EPFPDT---PNMGVMTTNVELVPLASPTFEP-GPPDERAIELARVIDRGIR 115

Query: 411 PVLPQTAQFP--------YTLRIVSEITESDGSSS 437
                  +            + I   + + DG+  
Sbjct: 116 ESRALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLM 150



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 41/244 (16%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKDGQDFFPLTVNYQERTYAVGK 72
           RP+ +E G I + ++G+ L   G T VL  +             FP T N    T  V  
Sbjct: 34  RPISIEVGIIEK-AEGSALVKIGNTQVLVGIKTTLGEP------FPDTPNMGVMTTNVEL 86

Query: 73  IPGGYLRRESR-PTENEILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHD 121
           +P      E   P E  I ++R+IDR IR           +          + ++V+ HD
Sbjct: 87  VPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVFIDVHVLDHD 146

Query: 122 LE-SSPHVVSMVAASAALMLSGLPFEGPVVGAQV------------------DYINGQYV 162
                   ++ +AA     +  + +       +V                    I    V
Sbjct: 147 GNLMDAIGIAAIAALLNARVPKVRYNEETGEVEVLEEKEPLPVEKIPVPVTFAKIGNILV 206

Query: 163 LNPRLDED---QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           ++P LDE+   +G L +    T     + + E      + V+ A+     + + + + I 
Sbjct: 207 VDPSLDEELVMEGRLTITTDETGHISAVQKSEGGAFKLEEVMYAVDVAFKKAEEIRKMII 266

Query: 220 KLAK 223
           +  K
Sbjct: 267 EAVK 270


>gi|315166715|gb|EFU10732.1| S1 RNA binding domain protein [Enterococcus faecalis TX1341]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|56461043|ref|YP_156324.1| exoribonuclease R [Idiomarina loihiensis L2TR]
 gi|56180053|gb|AAV82775.1| Exoribonuclease R [Idiomarina loihiensis L2TR]
          Length = 769

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 589 DDGTVKIASSSLAEIEAAR---EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-D 644
           D+  V  + +     +A R   E ++    +  +   ++G +  V +FG FV     + D
Sbjct: 607 DELGVHTSMTERRADDATRQVDEWLKCEFMLDHIGMEFEGVISSVTNFGLFVRLSDYQID 666

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           GL+HIS L  +               ++ V + GD V VK+ D + D  KI L++
Sbjct: 667 GLIHISNLDNDYYHFDQQKGMLIGENSNSVFRLGDNVKVKVKDVNLDDRKIDLTL 721


>gi|329577124|gb|EGG58596.1| Tex-like protein [Enterococcus faecalis TX1467]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|315150705|gb|EFT94721.1| S1 RNA binding domain protein [Enterococcus faecalis TX0012]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|315033707|gb|EFT45639.1| S1 RNA binding domain protein [Enterococcus faecalis TX0017]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|256618890|ref|ZP_05475736.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
 gi|256598417|gb|EEU17593.1| RNA binding S1 [Enterococcus faecalis ATCC 4200]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|229546000|ref|ZP_04434725.1| S1 domain RNA-binding protein [Enterococcus faecalis TX1322]
 gi|255976017|ref|ZP_05426603.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256852959|ref|ZP_05558329.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256958797|ref|ZP_05562968.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|257078828|ref|ZP_05573189.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|294781179|ref|ZP_06746528.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|307271207|ref|ZP_07552490.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|307279129|ref|ZP_07560187.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|307291304|ref|ZP_07571188.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|229308896|gb|EEN74883.1| S1 domain RNA-binding protein [Enterococcus faecalis TX1322]
 gi|255968889|gb|EET99511.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T2]
 gi|256711418|gb|EEU26456.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T8]
 gi|256949293|gb|EEU65925.1| RNA binding protein S1 [Enterococcus faecalis DS5]
 gi|256986858|gb|EEU74160.1| RNA binding protein S1 [Enterococcus faecalis JH1]
 gi|294451746|gb|EFG20199.1| S1 RNA binding domain protein [Enterococcus faecalis PC1.1]
 gi|306497535|gb|EFM67068.1| S1 RNA binding domain protein [Enterococcus faecalis TX0411]
 gi|306504254|gb|EFM73466.1| S1 RNA binding domain protein [Enterococcus faecalis TX0860]
 gi|306512705|gb|EFM81354.1| S1 RNA binding domain protein [Enterococcus faecalis TX4248]
 gi|315030059|gb|EFT41991.1| S1 RNA binding domain protein [Enterococcus faecalis TX4000]
 gi|315036792|gb|EFT48724.1| S1 RNA binding domain protein [Enterococcus faecalis TX0027]
 gi|315147792|gb|EFT91808.1| S1 RNA binding domain protein [Enterococcus faecalis TX4244]
 gi|323480542|gb|ADX79981.1| S1 RNA binding domain protein [Enterococcus faecalis 62]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|315170000|gb|EFU14017.1| S1 RNA binding domain protein [Enterococcus faecalis TX1342]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|171911330|ref|ZP_02926800.1| S1 RNA-binding domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 785

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 609 MIRSITDVPEVNKI---YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
             +   + PE  K+     G V  V  FGAFV     +DGLVH+SQLS   V   S+VVK
Sbjct: 635 KFQEGVEKPEDLKVGMKLPGIVTNVTAFGAFVDIGVHQDGLVHVSQLSDHFVKDASEVVK 694

Query: 666 EGDTVWVKLLDFD-DRGKIKLSMK 688
               V V + + D  R +I LSMK
Sbjct: 695 VQQKVQVTVTEVDLQRKRIALSMK 718


>gi|327534936|gb|AEA93770.1| YhgF like protein [Enterococcus faecalis OG1RF]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|194041963|ref|XP_001926809.1| PREDICTED: protein RRP5 homolog [Sus scrofa]
          Length = 1885

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + +G V +                          +  G V  + D+G F+ F     GL 
Sbjct: 705 ETEGRVLLCRKPALVSAVEGGQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLA 764

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
             + +S + V  TSD   EG TV  K+ + D ++ ++ LS+++ D
Sbjct: 765 PKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 809



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 2/158 (1%)

Query: 532 LNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDG 591
           L +   +  +    L      +  + +PP  + +++    +    + ++   +V + D  
Sbjct: 465 LVKGKVLTIKPYGMLVNMGREIRGL-VPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPE 523

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
             ++  +    +  ++    +     +      G +++V D+G  V F     GLV   +
Sbjct: 524 AKRLMMTLKKTLVESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHE 583

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
           LS E V     V   G  V V +L+ +  + K+ LS +
Sbjct: 584 LSAEYVPDPESVFYAGQVVKVVVLNCEPSKEKMLLSFR 621



 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 593  VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV---HI 649
            ++ + ++        +   + T   E  ++ +G V  +   G  +    +  GL    H+
Sbjct: 1306 LRSSRTNPDTKSKIVDPEINSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHV 1365

Query: 650  SQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
            SQ S  R A     + EG  +  K+L  + R   ++LS   +  +TGKP
Sbjct: 1366 SQHSPTRNALYDKYLPEGKLLTAKVLSLNRRENLVELS--FLPGDTGKP 1412


>gi|74194348|dbj|BAE24688.1| unnamed protein product [Mus musculus]
          Length = 1438

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 725 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 785 NVDESKQRMLLSLRLSD 801



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LST+ +     V   G  V V +L  +  + ++
Sbjct: 547 GVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 607 LLSFRLLSDSRPKD 620



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 508 LLCDPEAK 515


>gi|307288251|ref|ZP_07568249.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|306500767|gb|EFM70087.1| S1 RNA binding domain protein [Enterococcus faecalis TX0109]
 gi|315164183|gb|EFU08200.1| S1 RNA binding domain protein [Enterococcus faecalis TX1302]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|257089716|ref|ZP_05584077.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|312904062|ref|ZP_07763230.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|256998528|gb|EEU85048.1| S1 RNA binding protein [Enterococcus faecalis CH188]
 gi|310632538|gb|EFQ15821.1| S1 RNA binding domain protein [Enterococcus faecalis TX0635]
 gi|315578409|gb|EFU90600.1| S1 RNA binding domain protein [Enterococcus faecalis TX0630]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|256965294|ref|ZP_05569465.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|257086657|ref|ZP_05581018.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|257415932|ref|ZP_05592926.1| RNA binding protein S1 [Enterococcus faecalis AR01/DG]
 gi|257419130|ref|ZP_05596124.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|300860048|ref|ZP_07106136.1| Tex-like protein N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307273397|ref|ZP_07554642.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|256955790|gb|EEU72422.1| RNA binding protein S1 [Enterococcus faecalis HIP11704]
 gi|256994687|gb|EEU81989.1| RNA binding protein S1 [Enterococcus faecalis D6]
 gi|257157760|gb|EEU87720.1| RNA binding protein S1 [Enterococcus faecalis ARO1/DG]
 gi|257160958|gb|EEU90918.1| S1 RNA binding protein [Enterococcus faecalis T11]
 gi|295112847|emb|CBL31484.1| Transcriptional accessory protein [Enterococcus sp. 7L76]
 gi|300850866|gb|EFK78615.1| Tex-like protein N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306509924|gb|EFM78949.1| S1 RNA binding domain protein [Enterococcus faecalis TX0855]
 gi|315027448|gb|EFT39380.1| S1 RNA binding domain protein [Enterococcus faecalis TX2137]
 gi|315145621|gb|EFT89637.1| S1 RNA binding domain protein [Enterococcus faecalis TX2141]
 gi|315160293|gb|EFU04310.1| S1 RNA binding domain protein [Enterococcus faecalis TX0645]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|29375880|ref|NP_815034.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis
           V583]
 gi|227518574|ref|ZP_03948623.1| S1 domain RNA-binding protein [Enterococcus faecalis TX0104]
 gi|227553102|ref|ZP_03983151.1| S1 domain RNA-binding protein [Enterococcus faecalis HH22]
 gi|29343342|gb|AAO81104.1| S1 RNA binding domain protein [Enterococcus faecalis V583]
 gi|227073993|gb|EEI11956.1| S1 domain RNA-binding protein [Enterococcus faecalis TX0104]
 gi|227177767|gb|EEI58739.1| S1 domain RNA-binding protein [Enterococcus faecalis HH22]
 gi|315575631|gb|EFU87822.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309B]
 gi|315579927|gb|EFU92118.1| S1 RNA binding domain protein [Enterococcus faecalis TX0309A]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|67585452|ref|XP_665105.1| exosome complex exonuclease RRP41 [Cryptosporidium hominis TU502]
 gi|54655533|gb|EAL34876.1| exosome complex exonuclease RRP41 [Cryptosporidium hominis]
          Length = 140

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISA------QVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           +  ++    +R DGR    +R I        Q G+     G+  F +G  + ++V  +G 
Sbjct: 1   MNEIVNKHGIRQDGRKLTEIRRIKCIINEGNQRGIE---DGNVYFEQGQNK-LIVSIIGP 56

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
                 ++  +         ++   P ++ +  + G   R  I  G +  R    V+   
Sbjct: 57  VPISGNINYTNNNSGVQINCNFRVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVI-CD 115

Query: 417 AQFPYTLRIVSEITESDGSSSMAT 440
                 + I   I E DGS   A 
Sbjct: 116 QYSKSQIIINIIILEGDGSVRSAC 139


>gi|315174401|gb|EFU18418.1| S1 RNA binding domain protein [Enterococcus faecalis TX1346]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|56418769|ref|YP_146087.1| hypothetical protein GK0234 [Geobacillus kaustophilus HTA426]
 gi|56378611|dbj|BAD74519.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 721

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I E T    +I D              +          +  +     +G V  V+DFGAF
Sbjct: 607 IGELTLR--DIIDALRRPERDPRDELPKPLLRKDVLKMEDLKPGMELEGTVRNVVDFGAF 664

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  GD V V +   D  +G+I LSM
Sbjct: 665 VDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVEHVDVAKGRISLSM 716


>gi|312899402|ref|ZP_07758733.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
 gi|311293446|gb|EFQ72002.1| S1 RNA binding domain protein [Enterococcus faecalis TX0470]
          Length = 730

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LST+ V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|268323238|emb|CBH36826.1| DNA-directed RNA polymerase subunit E' [uncultured archaeon]
          Length = 201

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 30/133 (22%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           I+ IV+    ++ I D G                    ++   P++ +I +G VV++++F
Sbjct: 48  IQDIVDVKEGRIMIGDAGVYYETI------------FDALVFRPKMQEIVEGAVVEIVEF 95

Query: 634 GAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           GAFV      DGL+HISQ++ E +             TS  + EGD V  ++  +  ++R
Sbjct: 96  GAFVEIGP-LDGLLHISQITDEYISYDEKGAKLVTKDTSRTLGEGDKVRARIVAISLNER 154

Query: 681 ----GKIKLSMKV 689
                KI L+M+ 
Sbjct: 155 DPGDSKIGLTMRQ 167


>gi|254526566|ref|ZP_05138618.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
 gi|221537990|gb|EEE40443.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
          Length = 401

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G+V+ V  +G F+   GA  GL+H S L+   +    +V +EG+ +   + + 
Sbjct: 293 ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTNGSIRSLREVFREGEMIKALISEI 351

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D ++G+I L+  +++ + G+ I+
Sbjct: 352 DLEKGRIGLNTALLENSAGELII 374


>gi|71032567|ref|XP_765925.1| exosome complex exonuclease Rrp41 [Theileria parva strain Muguga]
 gi|68352882|gb|EAN33642.1| exosome complex exonuclease rrp41, putative [Theileria parva]
          Length = 259

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 16/200 (8%)

Query: 305 TVMLDKKVRMDGRDSETVRDISA------QVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +  + +R+DGR  +  R+          V  L    G S  ++G  +  V++   +  
Sbjct: 30  DYISIEGLRIDGRRKDEPRNTKLFFGSETSVDYLNY-DGVSEILQGLNKVQVLIKGPSEL 88

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA-RRAIHPVLPQTA 417
           + +   ++ G       +H   L  +T E     +P+ R I    +A +     ++    
Sbjct: 89  EVKGAKNVYGILEEKVDIHCEIL-LST-EKKVKNSPNERLIKDLAMAVKSTYQEMIISHC 146

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD----- 472
               ++ I   + E DGS     +    LAL+DAGV +   V+   +  +          
Sbjct: 147 YKTSSISIFINVIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTVSYLDSTVLTGIHL 206

Query: 473 -FIILSDISGDEDHLGHMDF 491
            +  L D +  E +      
Sbjct: 207 FYYSLLDPNQMEINASTATL 226


>gi|148710080|gb|EDL42026.1| programmed cell death protein 11 [Mus musculus]
          Length = 1643

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 697 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 756

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 757 NVDESKQRMLLSLRLSD 773



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LST+ +     V   G  V V +L  +  + ++
Sbjct: 547 GVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 607 LLSFRLLSDSRPKD 620



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 508 LLCDPEAK 515


>gi|116487529|gb|AAI26004.1| LOC779090 protein [Xenopus laevis]
          Length = 1427

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +      G V  +M +G FV F     GLV +S++S + V    D   EG+TV   ++
Sbjct: 721 EVQTGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVI 780

Query: 676 DFD-DRGKIKLSMKV 689
             D ++ +  L++K+
Sbjct: 781 KMDEEKKRFLLTLKM 795



 Score = 41.8 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +P     +V+    +    I  +   KV        K+  +    +  +   + +  +  
Sbjct: 475 VPKLHFADVLLKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDA 534

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLD 676
           +   I  G +V + D+G  V F     GL    +L S + ++   D    G  + V++L+
Sbjct: 535 QPGLITHGFIVAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLE 594

Query: 677 FDDRG-KIKLSMKVVDQ 692
            + +  ++ LS ++ ++
Sbjct: 595 CNPQTQQLLLSFRITEE 611


>gi|19075390|ref|NP_587890.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces pombe 972h-]
 gi|74582568|sp|O74835|RRP5_SCHPO RecName: Full=rRNA biogenesis protein rrp5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein rrp5; Short=U3
            snoRNA-associated protein rrp5
 gi|3650378|emb|CAA21087.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces pombe]
          Length = 1690

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 582  GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            G+ V ID+D      S   ++I+ + E+ ++  D+   + +  G VVKV D+G  +   G
Sbjct: 1199 GSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIAVGSNL-DGTVVKVGDYGVLIRIDG 1257

Query: 642  --ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
                 GL H S+++   V   S +   GD V   +LD D ++ +I L +K
Sbjct: 1258 TDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLK 1307



 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            G + ++ + GA V F  +    + +S++S   +    +  K G T+ V ++  D   +
Sbjct: 583 VGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENR 641



 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV +   G + K++  G  V      +GLV  + ++   +       K G +V  ++L  
Sbjct: 488 EVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLST 547

Query: 678 DD-RGKIKLSMKVVDQNTGKPIV 699
           +  R ++ L++K    NT  P++
Sbjct: 548 NVLRKRVLLTLKKSLLNTDLPLI 570



 Score = 44.5 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 603 IEAARE--MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +EAA+E  M  +ITD+ E  K Y G V     FG FV FC     LV  + +S E V   
Sbjct: 743 VEAAKENRMPINITDLKEGIK-YFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVP 801

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPI 698
           S V K   +V    L  +  + K  +S K + Q   K +
Sbjct: 802 SAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAV 840


>gi|191256845|ref|NP_001122095.1| programmed cell death 11 [Xenopus laevis]
 gi|189441690|gb|AAI67486.1| LOC779090 protein [Xenopus laevis]
          Length = 1812

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +      G V  +M +G FV F     GLV +S++S + V    D   EG+TV   ++
Sbjct: 721 EVQTGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVI 780

Query: 676 DFD-DRGKIKLSMKV 689
             D ++ +  L++K+
Sbjct: 781 KMDEEKKRFLLTLKM 795



 Score = 41.8 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           +P     +V+    +    I  +   KV        K+  +    +  +   + +  +  
Sbjct: 475 VPKLHFADVLLKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDA 534

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-STERVAKTSDVVKEGDTVWVKLLD 676
           +   I  G +V + D+G  V F     GL    +L S + ++   D    G  + V++L+
Sbjct: 535 QPGLITHGFIVAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLE 594

Query: 677 FDDRG-KIKLSMKVVDQ 692
            + +  ++ LS ++ ++
Sbjct: 595 CNPQTQQLLLSFRITEE 611


>gi|126695894|ref|YP_001090780.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542937|gb|ABO17179.1| 30S ribosomal protein S1-like protein B, putative Nbp1
           [Prochlorococcus marinus str. MIT 9301]
          Length = 401

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G+V+ V  +G F+   GA  GL+H S L+   +    +V +EG+ +   + + 
Sbjct: 293 ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTNGSIRSLREVFREGEMIKALISEI 351

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D ++G+I L+  +++ + G+ I+
Sbjct: 352 DLEKGRIGLNTALLENSAGELII 374


>gi|169837286|ref|ZP_02870474.1| polynucleotide phosphorylase/polyadenylase [candidate division TM7
           single-cell isolate TM7a]
          Length = 49

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 345 DTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
           +TQA+VV TLG++EDEQ +D +    R  F +HYNF
Sbjct: 4   ETQALVVATLGSKEDEQIIDGMEDETRKKFFLHYNF 39


>gi|325680263|ref|ZP_08159823.1| S1 RNA binding domain protein [Ruminococcus albus 8]
 gi|324107972|gb|EGC02228.1| S1 RNA binding domain protein [Ruminococcus albus 8]
          Length = 305

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           ID D  V    S  A  +  ++   +         +   +V  +  FGAFV        L
Sbjct: 95  IDSDEGVTAILSRRAAQQECKDNYING---LRCGDVIPAKVTHLEPFGAFVDIGCGIPSL 151

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + I  +S  R+A  +D    G  ++  + +  + G+I L+ K +
Sbjct: 152 IPIDAISVSRIAHPNDRFFNGQDIYAAVKNI-ECGRICLTHKEL 194


>gi|90655539|gb|ABD96378.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
           Synechococcus GOM 3O12]
          Length = 408

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 101/280 (36%), Gaps = 44/280 (15%)

Query: 444 SSLALMDAGVPIS---KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + LA +D   PI      V G  +GL  DG    I  DI G            +    G+
Sbjct: 121 AFLAALDENAPIGTTGDVVEGTVIGLESDG----IYVDIGGKAPGF----MPKSEAGLGV 172

Query: 501 TAMQMDMKIGGISENIMVMALQQAKR-----GRLHILNEMSKVLSESRLQLGEFTPRVEI 555
                +    G+   ++V   Q A        R   L +    + E   +       V  
Sbjct: 173 ITNLSERFPKGLRVQVLVTREQNADGMVTISCRALELRKSWDKVKEFEKEGKVVQVVVNG 232

Query: 556 M--------------AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSL 600
                           IP  Q+ +     G+  + +V +T     I+ +  T K+  S  
Sbjct: 233 FNRGGVTCDLEGLRGFIPRSQLED-----GENHQELVGKTLGVAFIEVNSETRKLVLSQK 287

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
               AAR          EV ++ +G V  V  +G F+   G   GL+H S ++   +   
Sbjct: 288 RAAVAAR------FQELEVGQLVEGVVAAVKPYGLFIDL-GGISGLLHQSAITNGSLRSI 340

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            +V  +G+ V   + + D  RG+I L+  +++   G+ +V
Sbjct: 341 REVFDQGERVQALITELDPGRGRIGLNTALLEGPPGELLV 380


>gi|15897919|ref|NP_342524.1| translation initiation factor IF-2 subunit alpha [Sulfolobus
           solfataricus P2]
 gi|284173559|ref|ZP_06387528.1| translation initiation factor IF-2 subunit alpha [Sulfolobus
           solfataricus 98/2]
 gi|20532129|sp|Q97Z79|IF2A_SULSO RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|88192063|pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
           Gamma Heterodimer From Sulfolobus Solfataricus Complexed
           With Gdpnp
 gi|219689210|pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 gi|219689211|pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 gi|219689216|pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 gi|219689217|pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 gi|13814236|gb|AAK41314.1| Translation initiation factor aif-2 (eiF2A) [Sulfolobus
           solfataricus P2]
 gi|261602628|gb|ACX92231.1| translation initiation factor 2, alpha subunit [Sulfolobus
           solfataricus 98/2]
          Length = 266

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           MI S + +P   +I    V +V D+G++V     G     +  S++S++ V    DV+KE
Sbjct: 1   MIYSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKE 60

Query: 667 GDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
              V VK++  D R G + +S+K V  +  +
Sbjct: 61  NRKVIVKVIRVDRRKGTVDVSLKKVTDDERR 91


>gi|87123920|ref|ZP_01079770.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
           RS9917]
 gi|86168489|gb|EAQ69746.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
           RS9917]
          Length = 432

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S      AAR          EV ++ +G VV V  +G FV   G   GL+H S 
Sbjct: 303 TRKLVLSEKRAATAAR------FAELEVGQLVEGTVVAVKPYGFFVDL-GGISGLLHQSM 355

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           ++   +    +V  +GD V   + + D  RG+I L+  +++   G+ ++
Sbjct: 356 ITGGSMRSLREVFDQGDAVKALITELDPGRGRIALNTALLEGQPGELLI 404


>gi|221117484|ref|XP_002155874.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 783

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 4/133 (3%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA---AREMIRSITDVPEVNKIYKG 625
           + G  +   V      +  +D+  + +  S + E +A     +   +  D  +   I +G
Sbjct: 582 LNGFAVDQFVRCKVLAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRG 641

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIK 684
            V      G FV      +G V I  LS   V     +   G  V  K++  D     I 
Sbjct: 642 YVKSCSKIGVFVSLSQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHID 701

Query: 685 LSMKVVDQNTGKP 697
           LS++  D N   P
Sbjct: 702 LSLRGKDVNDVDP 714



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 607 REMIRSITDVPEVNKIYKGQVVK------VMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           +E    +T + E   + KG V+       + + G  +     + G+ HI++LS       
Sbjct: 522 KEDFLELTRLGEDLNVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESP 581

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGK 696
            +       V  K+L      +I LS++    N G+
Sbjct: 582 LNGFAVDQFVRCKVLAIKKNDEIDLSLRQSRINEGQ 617


>gi|163789779|ref|ZP_02184216.1| ribonuclease R [Carnobacterium sp. AT7]
 gi|159875001|gb|EDP69068.1| ribonuclease R [Carnobacterium sp. AT7]
          Length = 783

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++        + ++   V +V + ++G +  V+ FG FV      +GL+HI
Sbjct: 610 EETSKAERRAVDAERETDALKKTEFMVDKVGQTFEGIIGSVLKFGLFVELPNTVEGLIHI 669

Query: 650 SQLSTERVAKTSD-----------VVKEGDTVWVKLLDFDDRGK 682
           S +  +      +           V + G  V VK+   D   +
Sbjct: 670 SNMKDDYFNYIEEQMMLVGERTGVVYRIGQKVKVKITKADPETR 713


>gi|330929198|ref|XP_003302547.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
 gi|311322015|gb|EFQ89360.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
          Length = 1791

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF--VHFCG 641
            K+  + +       S    +              +V +I   +V  V DFG F  V    
Sbjct: 1277 KIISNKEDQRNPQMSLKTSVIQGNYTEPLEFGDLKVGQIVTARVRHVEDFGVFLVVDNSN 1336

Query: 642  ARDGLVHISQLSTERVAK--TSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
               GL HISQL+   V K    D+ K+ D V  K++  + + + I  ++K
Sbjct: 1337 NVSGLCHISQLADNAVDKDKIKDMYKKDDIVKAKVVKIEPKQRKISFTLK 1386



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G +V V   GA V F G     + ++++S   V   +     G  V V+++  D + +
Sbjct: 650 GILVSVRRNGATVRFYGDVKAWLPVAEMSEAFVDDATRHFTNGQVVKVRIISVDAKER 707



 Score = 39.1 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            +  +   G V  ++    FV       G++  SQL  E +++ +  +++  ++  ++  
Sbjct: 825 VQAGETVHGFVRGILPDKIFVELGNGISGVLFKSQLPEEMISEPNFGLRKDQSITARVTH 884

Query: 677 FD-DRGKIKLSMKVVDQ 692
            D  +G   LSMK   +
Sbjct: 885 VDVGKGFFWLSMKAESE 901


>gi|325678259|ref|ZP_08157887.1| Tex-like protein N-terminal domain protein [Ruminococcus albus 8]
 gi|324110022|gb|EGC04210.1| Tex-like protein N-terminal domain protein [Ruminococcus albus 8]
          Length = 761

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 93/260 (35%), Gaps = 22/260 (8%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH 488
           + E   +S    V  +S +L+     I+  VA   +   ++   F     +   +     
Sbjct: 473 VVEDCVNSVGVDVNTASYSLLSYIAGINSAVAKNIVLYREENGAFTDRKQLLKVKKLGAK 532

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE 548
              + AG    +   +      GI       A  +A   +  I         +    +  
Sbjct: 533 AYEQCAGFLR-VPEAKNPFDNTGIHPE--SYAAAKALLDKCGIDESEVGNTEKLTEAMKN 589

Query: 549 FTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAARE 608
                    I    +   +  G   +  IV++        +             +  + +
Sbjct: 590 ---------IDLSALAKELDTGLPTLTDIVKEL-------EKPGRDPRDELPPPLMRSGD 633

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668
           ++      P +     G V  V+DFGAFV      DGLVHISQ+S + +    +VVK GD
Sbjct: 634 VMELKDLTPGME--LMGTVRNVIDFGAFVDIGVHEDGLVHISQISDKFIKHPLEVVKVGD 691

Query: 669 TVWVKLLDFD-DRGKIKLSM 687
            V V +LD D +RG++ L+M
Sbjct: 692 VVKVWVLDVDMERGRVSLTM 711


>gi|146329666|ref|YP_001210043.1| transcriptional accessory protein [Dichelobacter nodosus VCS1703A]
 gi|146233136|gb|ABQ14114.1| transcriptional accessory protein [Dichelobacter nodosus VCS1703A]
          Length = 734

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 575 RGIVEQTGAK--VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
           R I +Q G    ++I  +              A            +   I +G V  V +
Sbjct: 593 RYITDQFGLPTILDILSELEKPNRDPRGDFQFAHFAEEIQEISDLKSGMILEGVVSNVAN 652

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDV-VKEGDTVWVKLLDFDDRGKIKLSMKVVD 691
           FGAFV+    +DGLVHIS+LS + V     +           +     R +I L+M++ D
Sbjct: 653 FGAFVNIGVHQDGLVHISELSHQFVTDPRTIVKAGDVVKVKVVSVDVARKRIALTMRLDD 712

Query: 692 QNTGKPI 698
           +   K I
Sbjct: 713 KPAKKSI 719


>gi|116075332|ref|ZP_01472592.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
 gi|116067529|gb|EAU73283.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
          Length = 439

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 22/269 (8%)

Query: 444 SSLALMDAGVPIS---KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + LA +D   P+      V G  +GL  DG    +  DI G          K       I
Sbjct: 152 AFLAALDENEPVGTTGDVVHGTVIGLESDG----VYVDIGGKAPGFM---PKSECGLGVI 204

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
           T ++      G+  +++V   Q A          ++   S  ++++ E   +V  + +  
Sbjct: 205 TNLKERF-PKGLEIDVLVTREQNADGMVTISCRALALRQSWDKVKVLEKEGKVVQVKVSG 263

Query: 561 DQIRNVI----GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-----AREMIR 611
                V     G+ G + R  ++      ++             +E         R    
Sbjct: 264 FNRGGVTCDLEGLRGFIPRSQLQDGENHESLVGKTLGVAFLEVNSETRKLVLSEKRAATA 323

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +     EV ++ +G VV V  +G FV   G   GL+H S ++   +    +V   GD V 
Sbjct: 324 ARFSELEVGQLVEGHVVAVKPYGFFVDL-GGISGLLHQSVITGGSLRSLREVFDHGDLVK 382

Query: 672 VKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             + + D  RG+I L+  +++   G+ +V
Sbjct: 383 ALITELDPGRGRIALNTAMLEGQPGELLV 411


>gi|289434167|ref|YP_003464039.1| resolvase domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170411|emb|CBH26951.1| resolvase domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 725

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 17/139 (12%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  IG   + +R I+           D  +        E+ A   ++ +
Sbjct: 594 LQALSIPEEAEKLAIGK--ETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 640

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 641 ISMDDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 699

Query: 671 WVKLLDFD-DRGKIKLSMK 688
            V + + D  + +I L+M+
Sbjct: 700 TVWVDEVDTKKNRIALTMR 718


>gi|320100258|ref|YP_004175850.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Desulfurococcus mucosus DSM 2162]
 gi|319752610|gb|ADV64368.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Desulfurococcus mucosus DSM 2162]
          Length = 264

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +P++ +     V ++ D+GA+V     G R   +  S+++T+ V    DV++EG+ + VK
Sbjct: 7   LPDIGEYVVATVREIYDYGAYVTLDEYGDRKAFLPWSEIATKWVKNIRDVIREGEKIVVK 66

Query: 674 LLDFDDRGK-IKLSMKVV 690
           ++  D   K + +S+K V
Sbjct: 67  VIRVDRAKKEVDVSLKKV 84


>gi|47124316|gb|AAH70468.1| Programmed cell death 11 [Mus musculus]
          Length = 1862

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 725 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 785 NVDESKQRMLLSLRLSD 801



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LST+ +     V   G  V V +L  +  + ++
Sbjct: 547 GVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 607 LLSFRLLSDSRPKD 620



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 508 LLCDPEAK 515


>gi|54607128|ref|NP_035183.2| protein RRP5 homolog [Mus musculus]
 gi|224493305|sp|Q6NS46|RRP5_MOUSE RecName: Full=Protein RRP5 homolog; AltName: Full=Apoptosis-linked
           gene 4 protein; AltName: Full=Programmed cell death
           protein 11
          Length = 1862

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 725 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 784

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 785 NVDESKQRMLLSLRLSD 801



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LST+ +     V   G  V V +L  +  + ++
Sbjct: 547 GVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERM 606

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 607 LLSFRLLSDSRPKD 620



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 448 HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 507

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 508 LLCDPEAK 515


>gi|221054143|ref|XP_002261819.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193808279|emb|CAQ38982.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1218

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 7/111 (6%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHF----CGARDGLVHIS 650
             S S       R    + +    VN I+ G+V K+MDFG FV F     G ++GLVH +
Sbjct: 220 DRSHSREGDHKRRRREGAESFALRVNNIFSGKVSKIMDFGMFVSFRTEPGGYKEGLVHCT 279

Query: 651 QL--STERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            +  + +RV   S+  ++G  V VK+       KI L+M  VDQ TGK +V
Sbjct: 280 DILPNRKRVVNMSEKFQKGMKVKVKVKAIFGE-KINLNMSEVDQKTGKDLV 329


>gi|157412946|ref|YP_001483812.1| ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
 gi|157387521|gb|ABV50226.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
          Length = 400

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           E+ ++ +G+V+ V  +G F+   GA  GL+H S L+   +    +V +EG+ +   + + 
Sbjct: 292 ELGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTNGSIRSLREVFREGEMIKALISEI 350

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D ++G+I L+  +++ + G+ I+
Sbjct: 351 DLEKGRIGLNTALLENSAGELII 373


>gi|37359824|dbj|BAC97890.1| mKIAA0185 protein [Mus musculus]
          Length = 1866

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             +   +  G V  + ++G FV F     GL   + +S + V   S+   EG TV  K+ 
Sbjct: 731 EIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVT 790

Query: 676 DFDD-RGKIKLSMKVVD 691
           + D+ + ++ LS+++ D
Sbjct: 791 NVDESKQRMLLSLRLSD 807



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKI 683
           G +++V D+G  V F     GLV   +LST+ +     V   G  V V +L  +  + ++
Sbjct: 553 GVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERM 612

Query: 684 KLSMKVVDQNTGKP 697
            LS +++  +  K 
Sbjct: 613 LLSFRLLSDSRPKD 626



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              ++  + KG V+ +  FG  V       GLV    L+   +         GD V  ++
Sbjct: 454 HDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRV 513

Query: 675 LDFDDRGK 682
           L  D   K
Sbjct: 514 LLCDPEAK 521


>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
           9790]
 gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
          Length = 260

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 102/266 (38%), Gaps = 31/266 (11%)

Query: 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI 349
           + ++V   ++  ++   +  +  R+DGR     RDI      + +  GS++   G T+ +
Sbjct: 4   DTLAVISGLKRDMILNSI-KRGKRLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVV 62

Query: 350 VVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP--CATGEVSRMGAPSRREIGHGRLARR 407
             V +   E E + D+     +    ++   LP    T E    G  +   I + R+  R
Sbjct: 63  AGVKI--EEGEPFPDT---PDQGVMALNIEMLPMAFPTFEAGPPGEEA---IEYSRVVDR 114

Query: 408 AIH--------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----- 454
            I          ++ +     + + I  +I    G+   A+   +  AL +A VP     
Sbjct: 115 GIRESKMIDVTRLVIEPGTKVWMVFIDIDIINYAGNIIDASTIAAVAALRNAIVPASRIG 174

Query: 455 ---ISKPVAG--IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKI 509
                 PV    +++ + K GD+ +I  D+  ++   G +   +A  D           +
Sbjct: 175 GEDFKLPVNANPVSVTMAKIGDELVIDPDLEEEQVSNGRITITMAEDDH--IHAIQKGDV 232

Query: 510 GGISENIMVMALQQAKRGRLHILNEM 535
           G  +   +  A++ ++     I ++ 
Sbjct: 233 GEFTMEDIRKAIKASRDTGNRIRSQY 258



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 35/207 (16%)

Query: 27  SDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPT- 85
           + G+ +   G T V+A V     +++G+ F P T +       +  +P  +   E+ P  
Sbjct: 48  ASGSAMVELGRTKVVAGV----KIEEGEPF-PDTPDQGVMALNIEMLPMAFPTFEAGPPG 102

Query: 86  ENEILISRMIDRSIR-------------PLFSKCYKN-ETQVIINVMQHDLESSPHVVSM 131
           E  I  SR++DR IR             P         +  +I              ++ 
Sbjct: 103 EEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVFIDIDIINY---AGNIIDASTIAA 159

Query: 132 VAASA-----ALMLSGLPFEGPVVG----AQVDYINGQYVLNPRLDEDQGS---LDLFVS 179
           VAA       A  + G  F+ PV        +  I  + V++P L+E+Q S   + + ++
Sbjct: 160 VAALRNAIVPASRIGGEDFKLPVNANPVSVTMAKIGDELVIDPDLEEEQVSNGRITITMA 219

Query: 180 GTQDAVLMVELEANQLSEDVVLDAIIF 206
                  + + +  + + + +  AI  
Sbjct: 220 EDDHIHAIQKGDVGEFTMEDIRKAIKA 246


>gi|326527133|dbj|BAK04508.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 450

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 624 KGQVVKVMDFGAFVHF-CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           +GQV +V  +G FV        GL HIS+LS E V   +   + GD V  K+L  D DR 
Sbjct: 1   EGQVKRVESYGLFVTIKSSELVGLCHISELSDEPVLDINACYRAGDMVKAKILKIDQDRH 60

Query: 682 KIKLSMKV 689
           ++ L +K 
Sbjct: 61  RVSLGLKE 68


>gi|257085428|ref|ZP_05579789.1| RNA binding protein S1 [Enterococcus faecalis Fly1]
 gi|256993458|gb|EEU80760.1| RNA binding protein S1 [Enterococcus faecalis Fly1]
          Length = 730

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|255972979|ref|ZP_05423565.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
 gi|255963997|gb|EET96473.1| S1 RNA-binding domain-containing protein [Enterococcus faecalis T1]
          Length = 730

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|229550202|ref|ZP_04438927.1| S1 domain RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|257422802|ref|ZP_05599792.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|307277561|ref|ZP_07558653.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|312952309|ref|ZP_07771184.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|229304640|gb|EEN70636.1| S1 domain RNA-binding protein [Enterococcus faecalis ATCC 29200]
 gi|257164626|gb|EEU94586.1| S1 RNA binding protein [Enterococcus faecalis X98]
 gi|306505826|gb|EFM75004.1| S1 RNA binding domain protein [Enterococcus faecalis TX2134]
 gi|310629693|gb|EFQ12976.1| S1 RNA binding domain protein [Enterococcus faecalis TX0102]
 gi|315153272|gb|EFT97288.1| S1 RNA binding domain protein [Enterococcus faecalis TX0031]
 gi|315155950|gb|EFT99966.1| S1 RNA binding domain protein [Enterococcus faecalis TX0043]
 gi|315157882|gb|EFU01899.1| S1 RNA binding domain protein [Enterococcus faecalis TX0312]
          Length = 730

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|116006495|ref|XP_001179091.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 163

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 10/155 (6%)

Query: 536 SKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
             V  + + ++  F PR  +  IP  + +            I  +   +V + +    ++
Sbjct: 3   RGVAVKIQDRIHGFVPRTHLADIPVQKPQERF--------TIGSEIELRVLLVEPAKRRV 54

Query: 596 ASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
             +    +  +     +    P++     G VV V DFG  V F     G++  ++L  +
Sbjct: 55  LLTHKKTMVKSSLPFLASYAQPKLGMWIHGCVVAVKDFGCIVSFYNDVKGIIPRAELGMD 114

Query: 656 RVAKTSDVVKEGDTVWVKLLDFD--DRGKIKLSMK 688
             +  +D    G  +  ++L     +  K+ LS++
Sbjct: 115 ESSSPTDNFYVGQVLKCRVLRTHSPESKKLALSLR 149


>gi|218884735|ref|YP_002429117.1| translation initiation factor IF-2 subunit alpha [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766351|gb|ACL11750.1| translation initiation factor IF-2 subunit alpha [Desulfurococcus
           kamchatkensis 1221n]
          Length = 264

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +PE+ +     V ++ D+GA+V      D    +  S+++T+ V    DV++EG+ + VK
Sbjct: 7   LPEIGEYVIATVREIYDYGAYVTLDEYGDLKAFLPWSEVATKWVKNIRDVIREGEKIVVK 66

Query: 674 LLDFDDRGK-IKLSMKVV 690
           ++  D   K + +S+K V
Sbjct: 67  VIRIDRARKEVDVSLKKV 84


>gi|188588711|ref|YP_001922180.1| ribonuclease R [Clostridium botulinum E3 str. Alaska E43]
 gi|188498992|gb|ACD52128.1| ribonuclease R [Clostridium botulinum E3 str. Alaska E43]
          Length = 746

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 562 QIRNVI--GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           QI  +I   + G++     ++    V++    + +    +        ++ ++   + ++
Sbjct: 570 QIHRIIKEHLNGEIDDARFKKLVPIVDVASKQSSEKERVAQEAEREVDDLKKAEYMLDKI 629

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V  FG FV      +GLVH+++L  +              KT ++ K GD
Sbjct: 630 GEEFDGMISSVTSFGMFVELPNTIEGLVHVTELDDDYYIFDEAHLALIGEKTKNMHKLGD 689

Query: 669 TVWVKLLDFDDRGK 682
            V VK +  D   +
Sbjct: 690 EVKVKCVKVDIDNR 703


>gi|325002805|ref|ZP_08123917.1| RNA binding S1 domain-containing protein [Pseudonocardia sp. P1]
          Length = 753

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 104/274 (37%), Gaps = 43/274 (15%)

Query: 429 ITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDIS-------- 480
           + E   ++    +  +S  L+     IS+ +AG  +        F   + ++        
Sbjct: 494 VVEDCVNAVGVDLNSASAPLLRRVSGISESLAGAIVAHRDAHGPFRSRTSLTDVPRLGPK 553

Query: 481 GDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS 540
             E   G +  +       +T +  +      S  ++   +++ K     ++   +++  
Sbjct: 554 AFEQCAGFLRIRGGDEPLDVTGVHPE------SYPVVRRMVERTKIDVAALMGNAARLH- 606

Query: 541 ESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
                            I P +  +  G+G   +  I+ +             +    + 
Sbjct: 607 ----------------QIKPKEYVD-AGVGLPTVTDILTELEKP--------GRDPRPAF 641

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
                A  + +     P +  + +G V  V  FGAFV     +DGLVH+S +S + V+  
Sbjct: 642 RTATFAEGVHKISDLRPGM--LLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKDFVSDP 699

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
            +V K GD V VK+LD D+ R +I L++++ D+ 
Sbjct: 700 REVAKSGDVVKVKVLDVDEARKRISLTLRLDDEP 733


>gi|256962096|ref|ZP_05566267.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|293383118|ref|ZP_06629035.1| protein YhgF [Enterococcus faecalis R712]
 gi|293387729|ref|ZP_06632274.1| protein YhgF [Enterococcus faecalis S613]
 gi|312907293|ref|ZP_07766284.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|312909911|ref|ZP_07768759.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
 gi|256952592|gb|EEU69224.1| RNA binding protein S1 [Enterococcus faecalis Merz96]
 gi|291079457|gb|EFE16821.1| protein YhgF [Enterococcus faecalis R712]
 gi|291082918|gb|EFE19881.1| protein YhgF [Enterococcus faecalis S613]
 gi|310626321|gb|EFQ09604.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 512]
 gi|311289869|gb|EFQ68425.1| S1 RNA binding domain protein [Enterococcus faecalis DAPTO 516]
          Length = 730

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGK 682
           +G V  V+DFGAFV     +DGLVHIS+LS + V   +DVV  GD V V + D D  +G+
Sbjct: 658 QGTVRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDLKKGR 717

Query: 683 IKLSM 687
           I L+M
Sbjct: 718 ISLTM 722


>gi|251780958|ref|ZP_04823878.1| ribonuclease R [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085273|gb|EES51163.1| ribonuclease R [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 746

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 562 QIRNVI--GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           QI  +I   + G++     ++    V++    + +    +        ++ ++   + ++
Sbjct: 570 QIHRIIKEHLNGEIDDARFKKLVPIVDVASKQSSEKERVAQEAEREVDDLKKAEYMLDKI 629

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V  FG FV      +GLVH+++L  +              KT ++ K GD
Sbjct: 630 GEEFDGMISSVTSFGMFVELPNTIEGLVHVTELDDDYYIFDEAHLALIGEKTKNMHKLGD 689

Query: 669 TVWVKLLDFDDRGK 682
            V VK +  D   +
Sbjct: 690 EVKVKCVKVDIDNR 703


>gi|126136733|ref|XP_001384890.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
           46) [Scheffersomyces stipitis CBS 6054]
 gi|126092112|gb|ABN66861.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
           46) [Scheffersomyces stipitis CBS 6054]
          Length = 226

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 41/234 (17%)

Query: 23  IARQSDGAVLATYGETVVLATVVYDRSLKDGQ---DFFPLTVNYQERTYAVGKIPGGYLR 79
           + ++SDG+     G T V+A+V      K  Q   +   L +  +               
Sbjct: 8   LLQKSDGSAELLLGSTKVIASVTGPIEPKARQELPNQASLEILIRPAV------------ 55

Query: 80  RESRPTENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLE-----------SSP 126
                T  E L+   +   ++ +    K  +   QV++  +  D +           +  
Sbjct: 56  --GLATTREKLLEDKLRSLLQSIIVRFKYPRQLIQVVVQFLISDSKRTETDLVDYTSNDL 113

Query: 127 HVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPR-LDEDQGSLDLFVS-----G 180
           +  ++     AL+ +G+  +   V   +   NG   +NP   +  Q      +      G
Sbjct: 114 N-AAINCCYYALIDAGIALKASFVSLSIAVKNGNLTVNPTVYELAQSDSHHVICFNIEKG 172

Query: 181 TQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
             + +L++E + + + ED +   I     E + V     +      KE +  D 
Sbjct: 173 KANKILLLESQGD-IKEDELFAMISKAVEEAEKVHHEQQR---KFVKEKVENDY 222


>gi|328793631|ref|XP_001121140.2| PREDICTED: s1 RNA-binding domain-containing protein 1-like [Apis
           mellifera]
          Length = 847

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V  +  G V  +  FG FV     +DGL+    L           +  G  V VK+L  D
Sbjct: 781 VEMLLTGAVRNITHFGVFVDIGAGKDGLIPTKWLKNF-------TISIGQRVEVKVLSVD 833

Query: 679 -DRGKIKLSM 687
            +R +I L +
Sbjct: 834 LERNRINLEL 843


>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
 gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
          Length = 270

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 96/253 (37%), Gaps = 31/253 (12%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  K  R+DGR  + +R+++   G + R  GS+L   G+T+ +V V +       + D+ 
Sbjct: 22  LASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP--FPDT- 78

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--------IHPVLPQTAQ 418
                     +    P A+      G P    I   R+  R         +  ++ +  +
Sbjct: 79  --PNMGILTTNAELAPLASPTFEP-GPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGE 135

Query: 419 FPYTLRIVSEITESDGSS-------SMATVCGSSL--ALMDAGVPISKPV--AGIAMGLV 467
             + + I   + + DG+        ++A +  + +  +  D G     PV    + +   
Sbjct: 136 KVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGEDFKLPVQHYPVPVTFA 195

Query: 468 KDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISEN----IMVMALQQ 523
           K GD   I++D + DE+ +      VA  + G          G  +      ++ M++  
Sbjct: 196 KIGD--WIVADPNLDEESIASARLTVATNEEGKINAMQKGLSGTFTYEEVKKVINMSMNI 253

Query: 524 AKRGRLHILNEMS 536
             + R  IL + +
Sbjct: 254 GGKVREIILGDSN 266



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L +  G I R ++G+ L   G T VL  V     ++ G  F P T N    T      
Sbjct: 38  RNLTVTKGYIPR-AEGSALVNLGNTRVLVGV----KIEPGTPF-PDTPNMGILTTNAELA 91

Query: 74  PGGYLRRESRPT-ENEILISRMIDRSIR 100
           P      E  P  E  I ++R++DR IR
Sbjct: 92  PLASPTFEPGPPGEEAIELARVVDRGIR 119


>gi|187934548|ref|YP_001887237.1| ribonuclease R [Clostridium botulinum B str. Eklund 17B]
 gi|187722701|gb|ACD23922.1| ribonuclease R [Clostridium botulinum B str. Eklund 17B]
          Length = 746

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 562 QIRNVI--GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
           QI  +I   + G++     ++    V++    + +    +        ++ ++   + ++
Sbjct: 570 QIHRIIKEHLNGEIDDARFKKLVPIVDVASKQSSEKERVAQEAEREVDDLKKAEYMLDKI 629

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V  FG FV      +GLVH+++L  +              KT ++ K GD
Sbjct: 630 GEEFDGMISSVTSFGMFVELPNTIEGLVHVTELDDDYYIFDEAHLALIGEKTKNMHKLGD 689

Query: 669 TVWVKLLDFDDRGK 682
            V VK +  D   +
Sbjct: 690 EVKVKCVKVDIDNR 703


>gi|212225065|ref|YP_002308301.1| DNA-directed RNA polymerase subunit E' [Thermococcus onnurineus
           NA1]
 gi|212010022|gb|ACJ17404.1| DNA-directed RNA polymerase, subunit E' [Thermococcus onnurineus
           NA1]
          Length = 188

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 18/93 (19%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
              PE++++ +G+V+ V  +GAF+      DGLVHISQL  + V            +T  
Sbjct: 76  VWKPEMHEVVEGEVIDVAPYGAFIRIGPM-DGLVHISQLMDDYVVFDEKNKQFLGKETKR 134

Query: 663 VVKEGDTVWVKLLDFD------DRGKIKLSMKV 689
           ++K GD V  +++            KI L+M+ 
Sbjct: 135 ILKLGDEVKARIIAISIKSRVIRENKIGLTMRQ 167


>gi|242398022|ref|YP_002993446.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
           739]
 gi|242264415|gb|ACS89097.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
           739]
          Length = 187

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 18/93 (19%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
              PE++++ +G+V+ V+ +GAF+      DGLVHISQL  + V            +   
Sbjct: 76  VWKPEMHEVVEGEVIDVVPYGAFIRIGPM-DGLVHISQLMDDYVVFDEKNAQFVGKEKGH 134

Query: 663 VVKEGDTVWVKLLDFDDRGKI------KLSMKV 689
           V+K GD V  +++   ++ KI       L+M+ 
Sbjct: 135 VLKLGDVVRARIIAISEKSKIIRENKVGLTMRQ 167


>gi|288559435|ref|YP_003422921.1| translation initiation factor aIF-2 alpha subunit
           [Methanobrevibacter ruminantium M1]
 gi|288542145|gb|ADC46029.1| translation initiation factor aIF-2 alpha subunit
           [Methanobrevibacter ruminantium M1]
          Length = 260

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   + P   ++  G V KV+++GAF +      ++  +HIS++S+  V    D V+E
Sbjct: 1   MVRKSQEWPNEGELIVGTVYKVLNYGAFANLEEYAGKEAFIHISEVSSGWVKNIRDHVRE 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
              +  ++L  +  +G +  S+K + ++
Sbjct: 61  NQKIVARVLRVNPKKGHVDASLKRIRED 88


>gi|89099507|ref|ZP_01172383.1| Transcription accessory protein (S1 RNA binding domain) [Bacillus
           sp. NRRL B-14911]
 gi|89085893|gb|EAR65018.1| Transcription accessory protein (S1 RNA binding domain) [Bacillus
           sp. NRRL B-14911]
          Length = 723

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQ-TGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV 616
           I   Q    +  G   ++ I++       +  DD    I  + + ++E  +  +      
Sbjct: 599 IDIKQTAEELETGELTLKDIIDALRSPARDPRDDLAKPILKTDVLKLEDLKPGME----- 653

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
                  +G V  V+DFGAFV     +DGLVHIS+L  + V    DVV  GD V V +  
Sbjct: 654 ------LQGTVRNVVDFGAFVDIGVKQDGLVHISKLRKQFVKHPLDVVSVGDVVTVWVDS 707

Query: 677 FD-DRGKIKLSM 687
            D  +G++ L+M
Sbjct: 708 IDSQKGRVALTM 719


>gi|323508229|emb|CBQ68100.1| related to RRP5-processing of pre-ribosomal RNA [Sporisorium
            reilianum]
          Length = 1557

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 591  GTVKIASSSLAEIEAAREMIR-SITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVH 648
            G++K  +   AE   A +  R        V    KG V  V+DFG FV   G    GL H
Sbjct: 1033 GSIKPRAEREAERAQAHDAKRPKRLTDFSVGDKVKGFVKNVIDFGVFVQIDGTNVSGLAH 1092

Query: 649  ISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            +++LS  +  +     + GD V   +L  + ++ KI   +K
Sbjct: 1093 MNELSDGKADEALKAFRVGDKVRAIVLRINEEKKKISFGLK 1133



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           F+   G  DG+V  +  +  ++ +     K G  V  +++D D +R +I L++K     +
Sbjct: 608 FLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDPNRNRIVLTLKKSLVKS 667

Query: 695 GKPIV 699
             PIV
Sbjct: 668 DLPIV 672



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 612  SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
            SI+D+ +  KI +G V  + + G FV+     D  V + +L  E V       + G  V 
Sbjct: 953  SISDLIKGQKI-RGFVKAITNVGLFVNVGRKLDARVQVRELFDEFVRDWKTRFRVGQLVE 1011

Query: 672  VKLLDFDDRGK-IKLSMK 688
              ++D +     ++LS+K
Sbjct: 1012 GTVMDVNAHSNEVELSLK 1029


>gi|327400937|ref|YP_004341776.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
           SNP6]
 gi|327316445|gb|AEA47061.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
           SNP6]
          Length = 231

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
            +P    I  G V +V   G  V         + + +    R  K ++++  GD V  K+
Sbjct: 54  YIPSTGDIVIGIVREVTANGWVVDIYSPYQAFLPLLEYPETRNRKVNEILDIGDAVIAKV 113

Query: 675 LDFDDRGKIKLSMKV 689
           L+ D + K+ L+MK 
Sbjct: 114 LNIDPKMKVTLTMKD 128


>gi|58700047|ref|ZP_00374596.1| ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533434|gb|EAL57884.1| ribosomal protein S1 [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 136

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 621 KIYKGQVVKVMDFGAFV-----HFCGARDGLVHISQLSTERVAKTSDVVKEGDT-VWVKL 674
            I +G++  +  +G FV        G  DGL+HI+ +S  RV+  S V   G T     +
Sbjct: 21  DIIEGKIKSITHYGVFVGIHESDVVGVIDGLLHITDISWSRVSHPSAVFTCGQTIKVKII 80

Query: 675 LDFDDRGKIKLSMKVVDQNTGKP 697
               +  KI L +K ++ +  + 
Sbjct: 81  KIDKENAKISLGVKQLEDSPWQD 103


>gi|308808252|ref|XP_003081436.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
 gi|116059899|emb|CAL55958.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
          Length = 1947

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 611  RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERV-AKTSDVVKEGD 668
             +     +V  +  G V +V  +G F+   G +  GL HIS  +  R+    S  V++G+
Sbjct: 1405 NADVSGVDVGSVMMGTVRRVQPYGVFIGLDGTKLSGLCHISMFADARINDDLSLHVRQGE 1464

Query: 669  TVWVKLLDFD-DRGKIKLSMKV 689
             V VK+L+ + +  KI L  K 
Sbjct: 1465 RVRVKVLEINAETKKISLGCKA 1486



 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
           PP  + +++G           +   +V   D  + +   S    +  +   + +  +   
Sbjct: 525 PPLHVSDIVGRTTSSKVSPGAKLKFRVLNVDKNSRRATVSHKRTLIKSELPVIASLEDAL 584

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
              +  G V  V ++G F+   G   GL +++ L      K SD    G  V V ++  D
Sbjct: 585 PGAVTHGVVTGVNEYGVFISLYGDLRGLANVNDLGLLSDQKPSDAFGVGQVVRVTIVSAD 644

Query: 679 DRGKIKLSM 687
             G+++LS+
Sbjct: 645 ASGRLRLSL 653



 Score = 44.1 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 623  YKGQVVKVMDF-GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG 681
              G V +V+   G  V       G +H++ LS E   + S     G  V V++L+    G
Sbjct: 1236 LHGIVTRVVKHAGVMVQIGSHSFGRIHLTDLSDELKEEPSASYAAGAVVQVRVLNVSPSG 1295

Query: 682  KIKLSMKV 689
            +I LS + 
Sbjct: 1296 EIDLSTRA 1303



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           +  +      ++ G V      G FV F G   GL   SQL     A   D+   G TV 
Sbjct: 768 ASAEEATPGSVFPGYVASATSAGVFVRFLGKLTGLAPPSQLVDGVSADIHDMFPVGKTVN 827

Query: 672 VKLLDFDDRG---KIKLSMK 688
             +L  D      ++ LS+K
Sbjct: 828 ALVLAVDTSTSPPRLSLSLK 847



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVV 664
             +   +P++ K+++   +  +D G  V               H+SQLS ERV K     
Sbjct: 396 EHTSITLPKLGKVFQTATIARVDAGQGVALSVSDGDDHIAAYAHVSQLSDERVEKVEKKF 455

Query: 665 KEGDTVWVKLLD---FDDRGKIKLSMK 688
           K G +V V+++     D  G + +S+K
Sbjct: 456 KIGRSVNVRVIGHRLMD--GIVSVSLK 480


>gi|219118941|ref|XP_002180237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408494|gb|EEC48428.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 212

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 13/204 (6%)

Query: 331 LLQRTHGSSLFIRGDTQAIVVVTLG--TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           +L+   GS+L   G T+ I  V LG  T        SL        M    F   +TG++
Sbjct: 1   VLEAAQGSALVELGHTKVIGQV-LGPVTASSSHLPPSLQLNMEEGVMH---FELLSTGKI 56

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLAL 448
           +       RE         A+   +P        L +   + + DGS   A +  ++LAL
Sbjct: 57  NSWTIA--RETDLASNLSDALSASVPLRQYPKCALLVKITVLQDDGSILPACITAATLAL 114

Query: 449 MDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMK 508
            DA V +   VA   + +     D ++++D +  E         +A   +   +      
Sbjct: 115 ADASVEMYDVVAASTVAVC----DGLLVADPTLREVSAADAVMTLAILPNWKESTLWQQS 170

Query: 509 IGGISENIMVMALQQAKRGRLHIL 532
            G ++      A++  + G   + 
Sbjct: 171 -GRLNPQRANEAMELCRNGCRTMH 193


>gi|242060184|ref|XP_002451381.1| hypothetical protein SORBIDRAFT_04g001123 [Sorghum bicolor]
 gi|241931212|gb|EES04357.1| hypothetical protein SORBIDRAFT_04g001123 [Sorghum bicolor]
          Length = 792

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D +      S    E E   +  R++     V  I +  + + + FG FV   G    L+
Sbjct: 578 DRNSKRIFFSMKPKESEEFIQKKRNLMARLNVGDIVQCAIKRFVYFGIFVEVEG-VPALI 636

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              ++S +     +   K G  V  K++  D +  +I LS+K V  N 
Sbjct: 637 QQWEVSWDDTLDPAVSYKIGQVVDAKVIQLDYNNSRIFLSLKDVKPNP 684


>gi|159904859|ref|YP_001548521.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           C6]
 gi|159886352|gb|ABX01289.1| DNA-directed RNA polymerase [Methanococcus maripaludis C6]
          Length = 187

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 29/170 (17%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---------IDDDGTVKIA 596
           + +     + + IPP    N   +   V R ++E+    ++         +D D     +
Sbjct: 1   MYKILKISDTVRIPPKMFGN--PLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGS 58

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                           +T VPE+ ++  G++V V++FGAFV      DGL+HISQ+  + 
Sbjct: 59  IIYGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDF 117

Query: 657 V-----------AKTSDVVKEGDTVWVKLLDF-----DDRG-KIKLSMKV 689
           V            +T  V+++GD V  +++         RG KI L+M+ 
Sbjct: 118 VSFDPKREAIIGKETGKVLEKGDKVRARIVAVSLREEKKRGSKIALTMRQ 167


>gi|205372251|ref|ZP_03225065.1| transcription accessory protein [Bacillus coahuilensis m4-4]
          Length = 727

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSIT 614
            I   Q+   +G+G   ++ I+           D  +K       E+     ++ +  + 
Sbjct: 599 TIDVRQVAEDLGIGEVTLKDIM-----------DALMKPGRDPRDELSKPLLKKGVLKLE 647

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D+    ++ +G V  V+DFGAFV     +DGLVHIS+L    V    DVV  G  V V +
Sbjct: 648 DLAVGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVTVWV 706

Query: 675 LDFD-DRGKIKLSM 687
              D  +G++ L+M
Sbjct: 707 DSVDVQKGRVALTM 720


>gi|205375701|ref|ZP_03228488.1| transcription accessory protein [Bacillus coahuilensis m4-4]
          Length = 723

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSIT 614
            I   Q+   +G+G   ++ I+           D  +K       E+     ++ +  + 
Sbjct: 595 TIDVRQVAEDLGIGEVTLKDIM-----------DALMKPGRDPRDELSKPLLKKGVLKLE 643

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D+    ++ +G V  V+DFGAFV     +DGLVHIS+L    V    DVV  G  V V +
Sbjct: 644 DLAVGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVTVWV 702

Query: 675 LDFD-DRGKIKLSM 687
              D  +G++ L+M
Sbjct: 703 DSVDVQKGRVALTM 716


>gi|90655490|gb|ABD96330.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
           Synechococcus GOM 3O6]
          Length = 408

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 109/277 (39%), Gaps = 38/277 (13%)

Query: 444 SSLALMDAGVPIS---KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + LA +D   P+      V G  +GL  DG    I  DI G            +    G+
Sbjct: 121 AFLAALDENAPVGTTGDVVQGTVIGLESDG----IYVDIGGKAPGF----MPKSEAGLGV 172

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPP 560
                +    G+   ++V   Q A    +  ++  +  L +S  ++ E   + +++ +  
Sbjct: 173 ITNLGERFPKGLQVEVLVTREQNADG--MVTISCRALELRKSWDKVKELEKQGKVVQVIV 230

Query: 561 DQIR------NVIGMGGKVIR----------GIVEQTGAKVNID-DDGTVKIASSSLAEI 603
           +         ++ G+ G + R           +V +T     I+ +  T K+  S     
Sbjct: 231 NGFNRGGVTCDLEGLRGFIPRSQLQEGDNHQELVGKTLGVAFIEVNSETRKLVLSQKRAA 290

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
            AAR          EV ++ +G V  V  +G F+   G   GL+H S ++   +    +V
Sbjct: 291 VAAR------FQELEVGQLVEGVVAAVKPYGLFIDL-GGISGLLHQSSITNGSLRSIREV 343

Query: 664 VKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
             +G+ V   + + D  RG+I L+  +++   G+ ++
Sbjct: 344 FDQGERVQALITELDPGRGRIGLNTALLEGPPGELLI 380


>gi|51209897|ref|YP_063561.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
 gi|50657651|gb|AAT79636.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
          Length = 265

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K+ + D+ T KI  S    +          +D+  V ++  GQ+++   +G F++  G 
Sbjct: 163 CKILLVDEKTNKIILSHKLALL------YLYSDLLRVGRLVYGQIIQFKQYGIFLNIYG- 215

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
              L+HIS++  E +     V   G  + VK++  D  + ++ +S + V
Sbjct: 216 IPALLHISEIGYEYIDNIDCVFAIGHKIKVKIIHIDMKQARLSVSRREV 264


>gi|84999242|ref|XP_954342.1| exosome complex exonuclease rrp41 [Theileria annulata]
 gi|65305340|emb|CAI73665.1| exosome complex exonuclease rrp41, putative [Theileria annulata]
          Length = 245

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 74/201 (36%), Gaps = 24/201 (11%)

Query: 305 TVMLDKKVRMDGRDSETVRDISA------QVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
             +  + +R+DGR  + +R+          V  L    G S  ++G  +           
Sbjct: 5   DYISIEGLRIDGRRKDELRNTKIFFGSETSVDFLNY-DGVSEILQGLNKL---------- 53

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLA-RRAIHPVLPQTA 417
           + + V ++ G       +    L  +T +     +P+ R I    +A +     ++    
Sbjct: 54  EVKGVKNVYGILEEKVDIQCEIL-LST-DKKVKNSPNERLIKDLAMAVKSTYQEMIISHC 111

Query: 418 QFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILS 477
                + I   I E DGS     +    LAL+DAGV +   V+   +  +    D  +L+
Sbjct: 112 YKTSAISIFINIIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTVSYL----DSTVLT 167

Query: 478 DISGDEDHLGHMDFKVAGTDS 498
           D +  E +       +A + S
Sbjct: 168 DPNQMEINASTATLCIAFSSS 188


>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa]
 gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa]
          Length = 287

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 98/290 (33%), Gaps = 38/290 (13%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           +D+ +R DGR  +  R IS + G++ + +GS+    G T+ I  V    + +    ++L 
Sbjct: 16  IDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASV----KAELGRPNALQ 71

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGH-----------GRLARRAIHPVLPQT 416
             +    +              R G     E+             G  A   +  ++   
Sbjct: 72  PDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRCLLGGKSGAGAGIDLSSLIVAE 131

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIIL 476
            +  + L I   +  SDG+   A       AL + G+P    VA  A G   D    + +
Sbjct: 132 GKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP-RVQVAAGASG---DEQPEVDI 187

Query: 477 SDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMS 536
           SD    +     +   V  T  G       +      E+ M  A+  +   +  I     
Sbjct: 188 SDEEFMQFDTSGVPVIVTLTKVG---RHYIVDATSEEESQMSSAVSVSISRKGQICGLSK 244

Query: 537 KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586
           +  +                 + P  I ++I +   +   ++ +  ++++
Sbjct: 245 RGSAG----------------LDPSVISDMISVARHISEQLINKLDSEIS 278



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV 44
          RP+ +ETG I  Q++G+     G T V+A+V
Sbjct: 31 RPISIETGVI-PQANGSARIRIGATEVIASV 60


>gi|293401931|ref|ZP_06646071.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304589|gb|EFE45838.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 717

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V+DFGAFV      DGLVHIS++  +RV   S+VV  GD V V + + D ++ 
Sbjct: 647 LEGVVRNVVDFGAFVDIGLHEDGLVHISKMRRQRVQHPSEVVAVGDVVKVWVYNIDQEKQ 706

Query: 682 KIKLSM 687
           K++LS+
Sbjct: 707 KVQLSL 712


>gi|226506016|ref|NP_001141809.1| hypothetical protein LOC100273947 [Zea mays]
 gi|194706008|gb|ACF87088.1| unknown [Zea mays]
          Length = 153

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIK 684
           G+V +V D G FV   G R GLVH+SQ+   R  +       G  V  K++  D   K+ 
Sbjct: 50  GRVTRVGDVGCFVCLDGGRKGLVHVSQMLGRR--RAGATFTLGQ-VSFKVVLVDGA-KLG 105

Query: 685 LSMKVVDQNTGK 696
           LSM  VDQ+ GK
Sbjct: 106 LSMVDVDQDIGK 117


>gi|320582632|gb|EFW96849.1| hypothetical protein HPODL_1559 [Pichia angusta DL-1]
          Length = 222

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           I  +   L +  GS+ +  G T+ I  VT G  E  +              +  N  P +
Sbjct: 3   IIVENDPLDQVDGSASYEFGATKVISSVT-GPIESAR----PRNELPTKAYLDINIRPSS 57

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS-------S 437
                  G PS RE        + +  V+        T++I  +I + +G          
Sbjct: 58  -------GVPSTRETLLEHKLGQLLPTVINLDQYPRQTIQIAVQILK-NGEPKEYTARQL 109

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGD 471
           +A +    +AL+++G+ +          +  +G+
Sbjct: 110 VAIINSVFVALINSGISLKSSFMATCCSISTEGE 143


>gi|148238988|ref|YP_001224375.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
 gi|147847527|emb|CAK23078.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
          Length = 403

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S      AAR          EV ++ +G V  V  +G F+   G   GL+H S 
Sbjct: 274 TRKLVLSEKKAATAAR------FAELEVGQLVEGHVAAVKPYGLFIDL-GGISGLLHQSM 326

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           ++   +    +V  +GDTV   + + D  RG+I L+  +++   G+ ++
Sbjct: 327 ITGGSLRSLREVFDQGDTVKALITELDPGRGRIALNTAMLEGQPGELLI 375


>gi|315658865|ref|ZP_07911732.1| ribonuclease R [Staphylococcus lugdunensis M23590]
 gi|315495989|gb|EFU84317.1| ribonuclease R [Staphylococcus lugdunensis M23590]
          Length = 799

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
           E+ ++   +  +   ++G +  V +FG FV      +G+VHIS ++ +            
Sbjct: 627 ELKKAEYMIQHIGDQFEGIISSVANFGMFVELPNTIEGMVHISNMTDDYYHFEERQMALI 686

Query: 658 -AKTSDVVKEGDTVWVKLLDFDDRGKI 683
             + + V + GDTV VK+   D   ++
Sbjct: 687 GERLAKVFRIGDTVKVKVTHVDVDERM 713


>gi|328956695|ref|YP_004374081.1| putative RNA helicase [Carnobacterium sp. 17-4]
 gi|328673019|gb|AEB29065.1| putative RNA helicase [Carnobacterium sp. 17-4]
          Length = 725

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 25/183 (13%)

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
           +   GI       A          IL      LS     +G    +  +  +    +   
Sbjct: 561 LDNTGIHPETYKEAK--------QILELAGLTLS----DVGSLEAKKVLEKMDVAALAEQ 608

Query: 567 IGMGGKVIR-GIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG 625
           +G+G + ++  +   +    ++ D+ +  +  + +  +E     +             +G
Sbjct: 609 VGLGKETVKDMLQALSKPGRDLRDEMSAPLLRTDVLSMEDLIPGME-----------LEG 657

Query: 626 QVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
            V  V+DFGAFV     +DG+VHIS+LS   +   ++VV  GD V V +   D  +G+I 
Sbjct: 658 TVRNVVDFGAFVDVGVKQDGMVHISKLSKGYIQHPTNVVSVGDVVTVWVDSVDLKKGRIA 717

Query: 685 LSM 687
           L+M
Sbjct: 718 LTM 720


>gi|16082590|ref|NP_394548.1| DNA-directed RNA polymerase subunit E' [Thermoplasma acidophilum
           DSM 1728]
          Length = 192

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 18/99 (18%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----------- 657
             R++   PE+ +I  G+VV V  FGAF+ F    +GL+HISQ+  +R+           
Sbjct: 81  KYRALVYYPEMQEIVDGEVVSVQKFGAFIKFSSF-EGLLHISQIMDDRIDIDLENKRFIG 139

Query: 658 AKTSDVVKEGDTVWVKLLDFD------DRGKIKLSMKVV 690
            +T   +K GD V V+++  +         KI  +MK V
Sbjct: 140 KETKRDLKVGDRVRVRIVAMNLASSSISDSKIGFTMKQV 178


>gi|147806031|emb|CAN66429.1| hypothetical protein VITISV_005744 [Vitis vinifera]
          Length = 1026

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 6   TVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLA 42
           +V+I    R + +ETG I RQ+ G+V  T GET +L+
Sbjct: 79  SVKIPVGDRHILVETGHIGRQASGSVTVTDGETAILS 115


>gi|255583850|ref|XP_002532676.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223527589|gb|EEF29704.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1031

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)

Query: 619 VNKIYKGQVVKVMDFGAFVHF-----CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            + +Y+G+V +VM  G FV        G ++GL+H S             V+ GD V+VK
Sbjct: 87  GSAVYRGRVSRVMAKGCFVQLDGDDDFGGKEGLLHQSDFL------VGKEVRRGDEVYVK 140

Query: 674 LLDFDDRGK-IKLSMK-VVDQNT 694
           ++      K ++LSMK VVD+NT
Sbjct: 141 VVSDSPGQKGLRLSMKDVVDRNT 163


>gi|189199792|ref|XP_001936233.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983332|gb|EDU48820.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1760

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 584  KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF--VHFCG 641
            K+  + +       S    +              +V +I   +V  V DFG F  V    
Sbjct: 1241 KIISNKEDQRNPQMSLKTSVIQGNYTEPLEFSDLKVGQIVTAKVRHVEDFGVFLVVDNSS 1300

Query: 642  ARDGLVHISQLSTERVAK--TSDVVKEGDTVWVKLLDFDDRGK-IKLSMK 688
               GL HISQL+   V K    D+ K+ D V  K++  + + + I  ++K
Sbjct: 1301 NVSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLK 1350



 Score = 41.4 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G +  V   GA V F G     +  +++S   +   +     G  V V+++  D + +
Sbjct: 651 GILTSVRRNGATVRFYGDVKAWLPAAEMSEAFINDATRHFTNGQVVKVRIISVDAKER 708



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-D 679
           +   G V  ++    FV       G++  SQL  E +++ +  +++  ++  ++   D  
Sbjct: 830 ETVHGFVRGILPDKIFVELGNGISGVLFKSQLPEEMISEPNFGLRKDQSISARVTHVDVG 889

Query: 680 RGKIKLSMKVVDQ 692
           +G   LSMK   +
Sbjct: 890 KGFFWLSMKAESE 902


>gi|296330421|ref|ZP_06872901.1| ribonuclease R [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675967|ref|YP_003867639.1| ribonuclease R [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152424|gb|EFG93293.1| ribonuclease R [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414211|gb|ADM39330.1| ribonuclease R [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 779

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T  +   ++       ++ ++   + ++ + + G +  V +FG FV      +GLVH+
Sbjct: 598 EHTSTMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHV 657

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
           S ++ +              +T +V + GD + VK++D +   +
Sbjct: 658 SFMTDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDER 701


>gi|134046224|ref|YP_001097709.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           C5]
 gi|132663849|gb|ABO35495.1| DNA-directed RNA polymerase, subunit E' [Methanococcus maripaludis
           C5]
          Length = 187

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 20/122 (16%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V++D+     I     A           +T VPE+ ++  G++V V++FGAFV      D
Sbjct: 49  VDVDEVSDGSIIYGDGAAYHE--TEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGP-LD 105

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDF-----DDRG-KIKLSM 687
           GL+HISQ+  + V            +T  V+++GD V  +++         RG KI L+M
Sbjct: 106 GLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAVSLREEKKRGSKIALTM 165

Query: 688 KV 689
           + 
Sbjct: 166 RQ 167


>gi|325955240|ref|YP_004238900.1| Tex-like protein [Weeksella virosa DSM 16922]
 gi|323437858|gb|ADX68322.1| Tex-like protein [Weeksella virosa DSM 16922]
          Length = 709

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
           G V  +  FG FV      +GL+H+S+++ E +A  +  +     + V ++  D +  K 
Sbjct: 644 GIVQNITHFGCFVDVGIKENGLLHVSKIAKEFIADVNSKIHMHQELLVTVVSIDLENRKF 703

Query: 684 KLSM 687
           +LS+
Sbjct: 704 QLSL 707


>gi|309776489|ref|ZP_07671472.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915756|gb|EFP61513.1| S1 RNA binding domain protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 89

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGK 696
           GL+HIS++S   V      VK  + V VK+LD D+ G   KLS+K ++ N  +
Sbjct: 3   GLIHISEISERFVRDVHTYVKVNERVKVKILDVDEDGMHFKLSLKAIEANKAR 55


>gi|225677984|gb|EEH16268.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 256

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 343 RGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRM----------- 391
            G+T  I +V  G  E  +   +    +     +  N    +  +  +            
Sbjct: 1   MGNTIVICMVH-GPAEGRRSEATGPAREGAIISVAVNIAGFSGVDRKKKSLAAGAGGGGG 59

Query: 392 -GAPSRREIGHGRLARR-AIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALM 449
            G   R+      +A R A  P L        T+ +   +  SDGS   A +   +LAL+
Sbjct: 60  GGGGDRQASTDLAIALRDAFQPHLHTHLYPHSTISLNISVLSSDGSLFAACINACTLALV 119

Query: 450 DAGVPISKPVAGIAMGL 466
           DAG+P+   +    +G+
Sbjct: 120 DAGIPMPGLLCACTVGM 136


>gi|156937558|ref|YP_001435354.1| translation initiation factor 2 subunit alpha (aeIF-2a) [Ignicoccus
           hospitalis KIN4/I]
 gi|156566542|gb|ABU81947.1| translation initiation factor 2 subunit alpha (aeIF-2a) [Ignicoccus
           hospitalis KIN4/I]
          Length = 265

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARD--GLVHISQLSTERVAKTSDVVKEGDTVWV 672
            +P V ++    V +V D+GA+V      D    +  S++++  V     V+KE   +  
Sbjct: 5   RLPRVGELVVATVREVFDYGAYVTLDEYDDLEAYLPWSEVASRWVRNIRQVLKENQKIVC 64

Query: 673 KLLDFD-DRGKIKLSMKVVDQNTGK 696
           K++  +  RG + LS+K V  +  K
Sbjct: 65  KVIRVNKKRGTVDLSLKKVTDSERK 89


>gi|47094905|ref|ZP_00232519.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898929|ref|ZP_05258853.1| hypothetical protein LmonJ_03910 [Listeria monocytogenes J0161]
 gi|254911583|ref|ZP_05261595.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           J2818]
 gi|254935909|ref|ZP_05267606.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           F6900]
 gi|47016787|gb|EAL07706.1| S1 RNA binding domain protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608497|gb|EEW21105.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           F6900]
 gi|293589529|gb|EFF97863.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           J2818]
          Length = 725

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 17/138 (12%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  IG   + +R I+           D  +        E+ A   ++ +
Sbjct: 594 LQALSIPEEAEKLTIGK--ETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 640

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 641 ISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 699

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V + + D  + +I L+M
Sbjct: 700 TVWVDEVDTKKNRIALTM 717


>gi|332970519|gb|EGK09508.1| YhgF like protein [Desmospora sp. 8437]
          Length = 749

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 15/134 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSIT 614
            +  +++  V+G G   +R I+           D   +       E+ A   R  +  + 
Sbjct: 624 QVEVEKMAEVLGCGVPTLRDIL-----------DALRRPGRDPREELPAPVLRSDVLQLE 672

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           D+ E  ++ KG V  V+DFGAFV      DGLVHIS++S   V    D+V  GD V V +
Sbjct: 673 DLKEGMQL-KGTVRNVVDFGAFVDIGLKNDGLVHISKMSDRFVHHPMDLVGVGDVVDVWV 731

Query: 675 LDFD-DRGKIKLSM 687
           L  D +R ++ LSM
Sbjct: 732 LQVDPERERVSLSM 745


>gi|16080414|ref|NP_391241.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311311|ref|ZP_03593158.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315638|ref|ZP_03597443.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320554|ref|ZP_03601848.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324838|ref|ZP_03606132.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321312911|ref|YP_004205198.1| ribonuclease R [Bacillus subtilis BSn5]
 gi|7674332|sp|O32231|RNR_BACSU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
           protein homolog
 gi|2635874|emb|CAB15366.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485893|dbj|BAI86968.1| ribonuclease R [Bacillus subtilis subsp. natto BEST195]
 gi|320019185|gb|ADV94171.1| ribonuclease R [Bacillus subtilis BSn5]
          Length = 779

 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T  +   ++       ++ ++   + ++ + + G +  V +FG FV      +GLVH+
Sbjct: 598 EHTSSMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHV 657

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
           S ++ +              +T +V + GD + VK++D +   +
Sbjct: 658 SFMTDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDER 701


>gi|16802939|ref|NP_464424.1| hypothetical protein lmo0898 [Listeria monocytogenes EGD-e]
 gi|224499436|ref|ZP_03667785.1| hypothetical protein LmonF1_06937 [Listeria monocytogenes Finland
           1988]
 gi|224503133|ref|ZP_03671440.1| hypothetical protein LmonFR_11533 [Listeria monocytogenes FSL
           R2-561]
 gi|254832136|ref|ZP_05236791.1| hypothetical protein Lmon1_12349 [Listeria monocytogenes 10403S]
 gi|284801228|ref|YP_003413093.1| hypothetical protein LM5578_0978 [Listeria monocytogenes 08-5578]
 gi|284994370|ref|YP_003416138.1| hypothetical protein LM5923_0932 [Listeria monocytogenes 08-5923]
 gi|16410301|emb|CAC98976.1| lmo0898 [Listeria monocytogenes EGD-e]
 gi|284056790|gb|ADB67731.1| hypothetical protein LM5578_0978 [Listeria monocytogenes 08-5578]
 gi|284059837|gb|ADB70776.1| hypothetical protein LM5923_0932 [Listeria monocytogenes 08-5923]
          Length = 725

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 17/138 (12%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMI 610
           ++ ++IP +  +  IG   + +R I+           D  +        E+ A   ++ +
Sbjct: 594 LQALSIPEEAEKLTIGK--ETMRDII-----------DNLIAPGRDLRDELPAPLLKQDV 640

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV 670
            S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  GD V
Sbjct: 641 ISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVV 699

Query: 671 WVKLLDFD-DRGKIKLSM 687
            V + + D  + +I L+M
Sbjct: 700 TVWVDEVDTKKNRIALTM 717


>gi|317056463|ref|YP_004104930.1| RNA-binding S1 domain-containing protein [Ruminococcus albus 7]
 gi|315448732|gb|ADU22296.1| RNA binding S1 domain protein [Ruminococcus albus 7]
          Length = 305

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           EA  E + +         +   ++  +  FGAFV        L+ I  +S  R++  SD 
Sbjct: 109 EAQNECLENYVSHLHCGDVIPAKITHLEPFGAFVDIGCGIPSLIPIDSISVSRISHPSDR 168

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVV 690
              G  ++  +    D  +I L+ K +
Sbjct: 169 FFNGQDIYAAVKSISD-NRICLTHKEL 194


>gi|10640403|emb|CAC12217.1| DNA-directed RNA polymerase, subunit E related protein
           [Thermoplasma acidophilum]
          Length = 189

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 18/99 (18%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----------- 657
             R++   PE+ +I  G+VV V  FGAF+ F    +GL+HISQ+  +R+           
Sbjct: 78  KYRALVYYPEMQEIVDGEVVSVQKFGAFIKFSSF-EGLLHISQIMDDRIDIDLENKRFIG 136

Query: 658 AKTSDVVKEGDTVWVKLLDFD------DRGKIKLSMKVV 690
            +T   +K GD V V+++  +         KI  +MK V
Sbjct: 137 KETKRDLKVGDRVRVRIVAMNLASSSISDSKIGFTMKQV 175


>gi|89098803|ref|ZP_01171684.1| ribonuclease R [Bacillus sp. NRRL B-14911]
 gi|89086479|gb|EAR65599.1| ribonuclease R [Bacillus sp. NRRL B-14911]
          Length = 780

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++     ++ + Y G +  V +FG FV      +GL+H+S ++
Sbjct: 604 NMERRAVEAERETDELKKAEYMADKIGEEYDGIISSVTNFGMFVELPNTIEGLIHVSYMT 663

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              KT +V + GD + V++++ +   +
Sbjct: 664 DDYYRYDERHFAMIGEKTGNVFRIGDEITVRVINVNKDER 703


>gi|300864909|ref|ZP_07109753.1| hypothetical protein OSCI_1150003 [Oscillatoria sp. PCC 6506]
 gi|300337080|emb|CBN54903.1| hypothetical protein OSCI_1150003 [Oscillatoria sp. PCC 6506]
          Length = 374

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           V +I  G V  +  +G FV   G    L+HIS +S   V +   + K GD +   ++  D
Sbjct: 267 VGQIVDGTVRGIKTYGLFVDI-GGYHALLHISAISQMPVEQLDRIFKHGDWIRAMIVWMD 325

Query: 679 -DRGKIKLSMKVVDQNTG 695
            ++G++ LS   ++   G
Sbjct: 326 IEKGRVSLSTSDLEVEPG 343


>gi|195388798|ref|XP_002053065.1| GJ23674 [Drosophila virilis]
 gi|194151151|gb|EDW66585.1| GJ23674 [Drosophila virilis]
          Length = 240

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 314 MDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRND 373
           ++    + +R++  +   L R  GS ++ +G T  ++   LG  E +    S+ G+    
Sbjct: 6   IEEASKDKLREMHCKFNALSRCDGSVMYSQGAT-VVIAAVLGPIEVKTQNLSIEGSY--- 61

Query: 374 FMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD 433
             +  N+ P A       G P  +E       R  +   L   A     + +  +  E  
Sbjct: 62  --LECNYRPKA-------GLPQVKERIREAAIRDVLELALLSEAYPRAKMSVQVQELEDR 112

Query: 434 GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKV 493
           GS     +  + LA++  G+P+    A +   ++ +  +F+   D   +E       F  
Sbjct: 113 GSIDACALNAACLAMLIGGLPLKYSFAAVHC-IINEQGEFV--LDPDQNETLHQQASFTF 169

Query: 494 AG 495
           A 
Sbjct: 170 AF 171



 Score = 38.7 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+V+ + G TVV+A V+    +K          L  NY+ +                 P
Sbjct: 28  DGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKA--------------GLP 73

Query: 85  TENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP 144
              E +    I   +            ++ + V + +   S    ++ AA  A+++ GLP
Sbjct: 74  QVKERIREAAIRDVLELALLSEAYPRAKMSVQVQELEDRGSIDACALNAACLAMLIGGLP 133

Query: 145 FEGPVVGAQ-VDYINGQYVLNPRLDE---DQGSLDLFVSGTQDAVLMVELEA 192
            +        +    G++VL+P  +E    Q S           +L+V+ + 
Sbjct: 134 LKYSFAAVHCIINEQGEFVLDPDQNETLHQQASFTFAFDSVDGNLLLVQTKG 185


>gi|82799326|gb|ABB92252.1| 30S ribosomal protein S1-like protein B [uncultured marine type-A
           Synechococcus 5B2]
          Length = 411

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 105/280 (37%), Gaps = 44/280 (15%)

Query: 444 SSLALMDAGVPIS---KPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGI 500
           + LA +D   P+      + G  +GL  DG    I  DI G            +    G+
Sbjct: 124 AFLAALDENAPVGTTGDVIQGTVIGLESDG----IYVDIGGKAPGF----MPKSEAGLGV 175

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLS-ESRLQLGEFTPRVEIM--- 556
                +    G+   ++V   Q A          +    S +   +L +    V+++   
Sbjct: 176 VTNLRERFPKGLQVEVLVTREQNADGMVTISCRALELRKSWDKVKELEKQGKVVQVIVNG 235

Query: 557 ---------------AIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID-DDGTVKIASSSL 600
                           IP  Q+++     G+  + +V +T     I+ +  T K+  S  
Sbjct: 236 FNRGGVTCDLEGLRGFIPRSQLQD-----GENHQELVGKTLGVAFIEVNSETRKLVLSEK 290

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
               AAR          E+ ++ +G V  V  +G F+   G   GL+H S ++   +   
Sbjct: 291 RAAIAAR------FQELEIGQLVEGLVAAVKPYGLFIDL-GGISGLLHQSAITNGSLRSI 343

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            +V  +GD V   + + D  RG+I L+  +++   G+ +V
Sbjct: 344 REVFDQGDRVHALITELDPARGRIGLNTALLEGPPGELLV 383


>gi|156384755|ref|XP_001633298.1| predicted protein [Nematostella vectensis]
 gi|156220366|gb|EDO41235.1| predicted protein [Nematostella vectensis]
          Length = 717

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RG 681
             G+V  V  FGAFV     RDGL+H S+++        D +  GD V VK++  D+ +G
Sbjct: 637 LTGRVSNVTTFGAFVDCGIGRDGLIHTSRMAGR------DDLGAGDVVEVKVISKDETKG 690

Query: 682 KIKL 685
            + L
Sbjct: 691 HVNL 694


>gi|167769904|ref|ZP_02441957.1| hypothetical protein ANACOL_01245 [Anaerotruncus colihominis DSM
           17241]
 gi|167667895|gb|EDS12025.1| hypothetical protein ANACOL_01245 [Anaerotruncus colihominis DSM
           17241]
          Length = 310

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 4/137 (2%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGA----KVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
           IP D+    I  G      I+ +       ++   + G   I    L+     +E   + 
Sbjct: 60  IPRDEAALGIAEGTTRDIAIISRVNKPVCYRITGFERGGEGIVIPQLSRRAVQQECQDTY 119

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
                   +   +V  +  FG FV        L+ I  +S  R+A   D       +   
Sbjct: 120 ISKLVPGDVIDAKVTHLESFGCFVDIGCGLPSLIPIDAISVSRIAHPRDRFTPAQDIKAV 179

Query: 674 LLDFDDRGKIKLSMKVV 690
           +   +  G++ L+ K +
Sbjct: 180 VKAVEPDGRVSLTHKEL 196


>gi|289551358|ref|YP_003472262.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180889|gb|ADC88134.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis
           HKU09-01]
          Length = 791

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 13/86 (15%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
           E+ ++   +  +   ++G +  V +FG FV      +G+VHIS ++ +            
Sbjct: 619 ELKKAEYMIQHIGDQFEGIISSVANFGMFVELPNTIEGMVHISNMTDDYYHFEERQMALI 678

Query: 658 -AKTSDVVKEGDTVWVKL--LDFDDR 680
             + + V + GDTV VK+  +D D+R
Sbjct: 679 GERLAKVFRIGDTVKVKVSHVDVDER 704


>gi|222098566|ref|YP_002532624.1| ribonuclease r [Bacillus cereus Q1]
 gi|221242625|gb|ACM15335.1| ribonuclease R [Bacillus cereus Q1]
          Length = 791

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
           R     I    IR  I + GKV      +   K+    D +  +   ++       EM +
Sbjct: 550 RRYPDTIVHRLIREYI-INGKVDNETQAKWREKLPEIADHSSNMERRAVEAERETDEMKK 608

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKT 660
           +   V ++ + Y G +  V +FG FV      +GLVH+S L+ +              +T
Sbjct: 609 AEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERT 668

Query: 661 SDVVKEGDTVWVKLLDFDDRGK 682
            +V + GD + +++++ +   +
Sbjct: 669 GNVFRIGDEITIRVINVNKDER 690


>gi|308175107|ref|YP_003921812.1| ribonuclease R [Bacillus amyloliquefaciens DSM 7]
 gi|307607971|emb|CBI44342.1| ribonuclease R [Bacillus amyloliquefaciens DSM 7]
          Length = 777

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++     + G+      E+   ++    D T  +   ++       ++ ++   + ++
Sbjct: 568 VHRLIRTYLINGQSDEATQEKWAERLPEIADHTSTMERRAVDAERETDDLKKAEYMLDKI 627

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V +FG FV      +GLVH+S ++ +              +T +V + GD
Sbjct: 628 GEEFDGMISSVTNFGMFVELPNTIEGLVHVSFMTDDYYRFDEQHFAMIGERTGNVYRIGD 687

Query: 669 TVWVKLLDFDDRGK 682
            + VK++D +   +
Sbjct: 688 EITVKVVDVNKDER 701


>gi|297528584|ref|YP_003669859.1| Tex-like protein protein-like protein [Geobacillus sp. C56-T3]
 gi|297251836|gb|ADI25282.1| Tex-like protein protein-like protein [Geobacillus sp. C56-T3]
          Length = 721

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I E T    +I D              +          +  +     +G V  V+DFGAF
Sbjct: 607 IGELTLC--DIIDALCRPERDPRDELPKPLLRKDVLKMEDLKPGMELEGTVRNVVDFGAF 664

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  GD V V +   D  +G+I LSM
Sbjct: 665 VDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVEHVDVAKGRISLSM 716


>gi|328555076|gb|AEB25568.1| ribonuclease R [Bacillus amyloliquefaciens TA208]
 gi|328913431|gb|AEB65027.1| ribonuclease R [Bacillus amyloliquefaciens LL3]
          Length = 777

 Score = 54.9 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++     + G+      E+   ++    D T  +   ++       ++ ++   + ++
Sbjct: 568 VHRLIRTYLINGQSDEATQEKWAERLPEIADHTSTMERRAVDAERETDDLKKAEYMLDKI 627

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V +FG FV      +GLVH+S ++ +              +T +V + GD
Sbjct: 628 GEEFDGMISSVTNFGMFVELPNTIEGLVHVSFMTDDYYRFDEQHFAMIGERTGNVYRIGD 687

Query: 669 TVWVKLLDFDDRGK 682
            + VK++D +   +
Sbjct: 688 EITVKVVDVNKDER 701


>gi|159465815|ref|XP_001691118.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
 gi|158279804|gb|EDP05564.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
          Length = 353

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVA 658
           A +   ++        PEV+ +   QV  + + GA+V        +G++ +S+LS  R+ 
Sbjct: 1   ANMAQHQDSRMYEAKYPEVDDVVMVQVKSIAEMGAYVSLLEYNGIEGMILLSELSRRRIR 60

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
             + ++K G    V +L  D ++G I LS + V   
Sbjct: 61  SITKLIKVGRQEPVMVLRVDKEKGYIDLSKRRVSPE 96


>gi|150403357|ref|YP_001330651.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           C7]
 gi|150034387|gb|ABR66500.1| DNA-directed RNA polymerase [Methanococcus maripaludis C7]
          Length = 187

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 18/93 (19%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
           T VPE+ ++  G++V V++FGAFV      DGL+HISQ+  + V            +T  
Sbjct: 76  TYVPELQEVVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGK 134

Query: 663 VVKEGDTVWVKLLDF-----DDRG-KIKLSMKV 689
           V+++GD V  +++         RG KI L+M+ 
Sbjct: 135 VLEKGDKVRARIVAVSLREEKKRGSKIALTMRQ 167


>gi|308800668|ref|XP_003075115.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
 gi|116061669|emb|CAL52387.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
          Length = 321

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 77/207 (37%), Gaps = 6/207 (2%)

Query: 293 SVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVV 352
           +  + ++   +   +  + +R+DGR +  +R       +  +  GS+ F  G+T     V
Sbjct: 42  ASVKRVERATM-EYVSFEGLRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRV 100

Query: 353 TLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV 412
             G  E +        ++       +     A+  V        R      +  +A+   
Sbjct: 101 D-GPSERKFGGAEEGASEACALTCSHGRSAFASDGVQAGRKGDGRSKQFESVLAKALTSA 159

Query: 413 LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDD 472
           +         +++ + +   DG +  A+ C + LAL DAG+P+   +    +G +    D
Sbjct: 160 VCVDLMPRCEVQVRTTVLCDDGGARAASACAAVLALADAGIPLKGIIGSCTVGHL----D 215

Query: 473 FIILSDISGDEDHLGHMDFKVAGTDSG 499
              L D++ DE+     +       +G
Sbjct: 216 GEALIDVNRDEERGRGPELWTCALSAG 242



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 26  QSDGAVLATYGETVVLATVVYDRSLK------DGQDFFPLTVNYQERTYAVGKIPGGYLR 79
           Q DG+     G TV+   V      K         +   LT ++    +A   +  G  +
Sbjct: 82  QCDGSARFELGNTVIECRVDGPSERKFGGAEEGASEACALTCSHGRSAFASDGVQAG-RK 140

Query: 80  RESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALM 139
            + R  + E ++++ +  ++        + E QV   V+  D  +          + A  
Sbjct: 141 GDGRSKQFESVLAKALTSAVCVDLM--PRCEVQVRTTVLCDDGGARAASACAAVLALADA 198

Query: 140 LSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS 173
             G+P +G +    V +++G+ +++   DE++G 
Sbjct: 199 --GIPLKGIIGSCTVGHLDGEALIDVNRDEERGR 230


>gi|42784278|ref|NP_981525.1| ribonuclease R [Bacillus cereus ATCC 10987]
 gi|42740209|gb|AAS44133.1| ribonuclease R [Bacillus cereus ATCC 10987]
          Length = 806

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
           R     I    IR  I + GKV      +   K+    D +  +   ++       EM +
Sbjct: 565 RRYPDTIVHRLIREYI-INGKVDNETQAKWREKLPEIADHSSNMERRAVEAERETDEMKK 623

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKT 660
           +   V ++ + Y G +  V +FG FV      +GLVH+S L+ +              +T
Sbjct: 624 AEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERT 683

Query: 661 SDVVKEGDTVWVKLLDFDDRGK 682
            +V + GD + +++++ +   +
Sbjct: 684 GNVFRIGDEITIRVINVNKDER 705


>gi|41615160|ref|NP_963658.1| DNA-directed RNA polymerase subunit E' [Nanoarchaeum equitans
           Kin4-M]
 gi|40068884|gb|AAR39219.1| NEQ370 [Nanoarchaeum equitans Kin4-M]
          Length = 181

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 14/96 (14%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD---- 662
           +   + +T  P + ++  G +  ++DFGA+V+     DGL+HISQ+  + V  + D    
Sbjct: 70  KVRFKVLTWKPILKEVTLGIISNIVDFGAYVNIGP-TDGLIHISQIMDDIVDYSKDKVLA 128

Query: 663 ------VVKEGDTVWVKLLDFDDR---GKIKLSMKV 689
                 ++K  D V  K++    +    KI L+M+ 
Sbjct: 129 GRKTKKILKIEDIVKAKIVGISIKPIGTKINLTMRQ 164


>gi|23005827|ref|ZP_00048451.1| COG0539: Ribosomal protein S1 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 220

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 24/214 (11%)

Query: 447 ALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506
           A  +  VP+ +       G +K GD+  +  D    E+ L            G   +  D
Sbjct: 31  AKTEGRVPLKEFTGPGREGELKVGDEVEVYVD--RIENAL------------GEAVISRD 76

Query: 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNV 566
                 S   +  A +  +R    I N++    +        F PR ++   P   +  +
Sbjct: 77  KARREESWVKLEKAFEANERVTGTIFNQVKGGYTVDLDGAVAFLPRSQVDIRPVRDVTPL 136

Query: 567 IGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQ 626
           +G         +++          G + ++  ++ E   A +    + ++ E  ++  G 
Sbjct: 137 LGTPQPFQILKMDRRR--------GNIVVSRRTVLEESRAEQRSELVANLEEG-QVIDGV 187

Query: 627 VVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
           V  + ++GAFV   G  DGL+H++ ++  RV   
Sbjct: 188 VKNITEYGAFVDL-GGIDGLLHVTDMAWRRVNHP 220


>gi|154687491|ref|YP_001422652.1| ribonuclease R [Bacillus amyloliquefaciens FZB42]
 gi|154353342|gb|ABS75421.1| Rnr [Bacillus amyloliquefaciens FZB42]
          Length = 777

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++     + G+      E+   ++    D T  +   ++       ++ ++   + ++
Sbjct: 568 VHRLIRTYLINGQSDEATQEKWAERLPEIADHTSTMERRAVDAERETDDLKKAEYMLDKI 627

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V +FG FV      +GLVH+S ++ +              +T +V + GD
Sbjct: 628 GEEFDGMISSVTNFGMFVELPNTIEGLVHVSFMTDDYYRFDEQHFAMIGERTGNVYRIGD 687

Query: 669 TVWVKLLDFDDRGK 682
            + VK++D +   +
Sbjct: 688 EITVKVVDVNKDER 701


>gi|87302523|ref|ZP_01085340.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
           5701]
 gi|87282867|gb|EAQ74824.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
           5701]
          Length = 403

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             R    S+    EV ++  GQVV V  +G FV   G   GL+H S ++   +    +  
Sbjct: 281 EKRAASASLLAELEVGQLVDGQVVSVKPYGFFVDL-GGVSGLLHQSSITGVHLRDIREAF 339

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGK 696
            +G+ +   +   D  RG+I L+  +++   G+
Sbjct: 340 SQGERLKALVTQIDPSRGRIALNTALLETQPGE 372


>gi|288560738|ref|YP_003424224.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
           ruminantium M1]
 gi|288543448|gb|ADC47332.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
           ruminantium M1]
          Length = 189

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           +I++ G   +     A          +I   PE  ++ +G+V+ + +FGAFV      DG
Sbjct: 47  SIEEMGEGVLIMGDGAAYHNVI--FNAIFFKPEQQEVVEGEVIDIAEFGAFVRIGPM-DG 103

Query: 646 LVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRG------KIKLSMK 688
           LVH+SQ++ + +            ++  ++ EGD V  +++    +G      KI L+M+
Sbjct: 104 LVHVSQVTDDYINYDPRNASLIAKESKKILTEGDRVRARIVTLSLKGKTVQESKIGLTMR 163

Query: 689 V 689
            
Sbjct: 164 Q 164


>gi|255081712|ref|XP_002508078.1| predicted protein [Micromonas sp. RCC299]
 gi|226523354|gb|ACO69336.1| predicted protein [Micromonas sp. RCC299]
          Length = 598

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 25/108 (23%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGD-- 668
           + T  P ++ I KG+V  V  FG FV   G  RDGLVH + +S E   +  D    GD  
Sbjct: 185 AATLHPPLHSIQKGRVATVRPFGLFVRMNGFVRDGLVHCANVSDELTFRRED----GDDA 240

Query: 669 -------------TVWVKLLDFDDRG-----KIKLSMKVVDQNTGKPI 698
                         V+ K+++    G     K+ LSMK+VDQ++G+ +
Sbjct: 241 KVMAMEYFHPRDSEVYAKVVEIRRDGYSGDVKVGLSMKLVDQSSGEDL 288



 Score = 44.5 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVH 648
           +G          + +  R+      D P +N  ++  V +V  +G FV   G  R+GLV 
Sbjct: 300 EGGFGWNGHGNGDGDGHRDSRNLSDDPPALNSTHRAVVKEVKPYGVFVSMAGFRRNGLVP 359

Query: 649 ISQLST-----------ERVAKTSDVVKEGDTVWVKLLDFDDRG-------KIKLSMKVV 690
             Q+S            ++V      V +GD  WVK+++  +         K+  S+K+ 
Sbjct: 360 HHQVSDYLEFSREDTDEDKVKALEGAVGKGDEAWVKVVELKEPNYPGEGPVKVTCSIKLC 419

Query: 691 DQNTGKPI 698
           DQ  G  +
Sbjct: 420 DQRDGSDL 427


>gi|227524787|ref|ZP_03954836.1| exoribonuclease R [Lactobacillus hilgardii ATCC 8290]
 gi|227088043|gb|EEI23355.1| exoribonuclease R [Lactobacillus hilgardii ATCC 8290]
          Length = 780

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 572 KVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQV 627
               GI ++T  K  N+ D+     +      ++A R+   M ++      + + + G V
Sbjct: 582 YEDNGINDETKKKYANVLDEIATTTSEYERRAVDAERDTDAMKKAEYMNDHIGEEFDGVV 641

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-----------VKEGDTVWVKLLD 676
             VM FG F+      +GLVHIS++S +                    K G  + VK+++
Sbjct: 642 SSVMKFGLFIELPNTVEGLVHISRMSDDYYQYVEQFMALVGRRTHRTYKMGQPIRVKVIN 701

Query: 677 FD 678
            D
Sbjct: 702 VD 703


>gi|227513641|ref|ZP_03943690.1| exoribonuclease R [Lactobacillus buchneri ATCC 11577]
 gi|227083157|gb|EEI18469.1| exoribonuclease R [Lactobacillus buchneri ATCC 11577]
          Length = 780

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 572 KVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQV 627
               GI ++T  K  N+ D+     +      ++A R+   M ++      + + + G V
Sbjct: 582 YEDNGINDETKKKYANVLDEIATTTSEYERRAVDAERDTDAMKKAEYMNDHIGEEFDGVV 641

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-----------VKEGDTVWVKLLD 676
             VM FG F+      +GLVHIS++S +                    K G  + VK+++
Sbjct: 642 SSVMKFGLFIELPNTVEGLVHISRMSDDYYQYVEQFMALVGRRTHRTYKMGQPIRVKVIN 701

Query: 677 FD 678
            D
Sbjct: 702 VD 703


>gi|227510627|ref|ZP_03940676.1| exoribonuclease R [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190279|gb|EEI70346.1| exoribonuclease R [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 780

 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 572 KVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQV 627
               GI ++T  K  N+ D+     +      ++A R+   M ++      + + + G V
Sbjct: 582 YEDNGINDETKKKYANVLDEIATTTSEYERRAVDAERDTDAMKKAEYMNDHIGEEFDGVV 641

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-----------VKEGDTVWVKLLD 676
             VM FG F+      +GLVHIS++S +                    K G  + VK+++
Sbjct: 642 SSVMKFGLFIELPNTVEGLVHISRMSDDYYQYVEQFMALVGRRTHRTYKMGQPIRVKVIN 701

Query: 677 FD 678
            D
Sbjct: 702 VD 703


>gi|45358003|ref|NP_987560.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           S2]
 gi|44920760|emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
           S2]
          Length = 187

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 29/170 (17%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN---------IDDDGTVKIA 596
           + +     + + IPP    N   +   V R ++E+    ++         +D D     +
Sbjct: 1   MYKILKISDTVRIPPKMFGN--PLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGS 58

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                           +T VPE+ ++  G++V V++FGAFV      DGL+HISQ+  + 
Sbjct: 59  IIYGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDF 117

Query: 657 V-----------AKTSDVVKEGDTVWVKLLDF-----DDRG-KIKLSMKV 689
           V            +T  V+++GD V  +++         RG KI L+M+ 
Sbjct: 118 VSFDPKREAIIGKETGKVLEKGDKVRARIVAVSLREEKKRGSKIALTMRQ 167


>gi|311069884|ref|YP_003974807.1| ribonuclease R [Bacillus atrophaeus 1942]
 gi|310870401|gb|ADP33876.1| ribonuclease R [Bacillus atrophaeus 1942]
          Length = 779

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D T  +   ++       ++ ++   + ++ + + G +  V +FG FV      +GL+H+
Sbjct: 598 DHTSTMERRAVDAERETDDLKKAEFMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLIHV 657

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
           S ++ +              +T +V + GD + VK++D +   +
Sbjct: 658 SFMTDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKEER 701


>gi|297199655|ref|ZP_06917052.1| 30S ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
 gi|197713975|gb|EDY58009.1| 30S ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
          Length = 267

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           +   G+V K++ FG FV      +GLVH+S+L++  VA   DVV+ GD 
Sbjct: 197 QRLSGRVTKLVPFGVFVELADGIEGLVHLSELNSVPVAAPEDVVQVGDQ 245



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 604 EAAREMIRSITDVPEVN--KIYKGQVVKVMDFGAFVHFCGARD-------GLVHISQLST 654
            AA E       +  +   ++  G V  +  FG FV      +       G +   +LS 
Sbjct: 85  MAATENPELWAFLKRLRHGELLSGTVAAIERFGVFVALDEGPEHPVYPGVGFITYPELSW 144

Query: 655 ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694
            R    SDVV+ G  V  + L FD   G+ +LS++ +  + 
Sbjct: 145 RRFETASDVVEVGQRVSCEFLQFDTWNGEARLSLRAMQPDP 185


>gi|50307491|ref|XP_453725.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642859|emb|CAH00821.1| KLLA0D14993p [Kluyveromyces lactis]
          Length = 225

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 82/228 (35%), Gaps = 24/228 (10%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           +     +L    GSS+     T+ I  V+ G  E +   +  +       +         
Sbjct: 1   METTTHVLGHVDGSSVVSNSGTKVICSVS-GPMEPKSRQELPTQLALEIIV--------- 50

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS------SSM 438
                  G  S RE       R  + PVL +       ++I  ++ E+  S         
Sbjct: 51  ---KPAEGVQSTREKLMEDQIRSVLTPVLARYLHPRQFVQICLQVLEAGESRDYTVKEVS 107

Query: 439 ATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG--HMDFKVAGT 496
             V  + LAL+DAGVP+    +G  +G+  +G   ++    S             ++   
Sbjct: 108 VCVNAAVLALVDAGVPLLSMCSGTCIGITTEGKQLVVNPTESQLAKCESVHVYCLELGTN 167

Query: 497 DSG---ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
           ++G   +  + +   +G   E+ +   L+  ++  + +  E+  V+ +
Sbjct: 168 ENGDIDVRNLLLLDSLGSFDESQLFKVLETGEKECIRLYTELRSVIKD 215



 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 21/154 (13%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDF-FPLTVNYQERTYAVGKIPGGYLRRESRPTE 86
           DG+ + +   T V+ +V      K  Q+    L +    +              E   + 
Sbjct: 12  DGSSVVSNSGTKVICSVSGPMEPKSRQELPTQLALEIIVKPA------------EGVQST 59

Query: 87  NEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHV----VSMVAASAALML 140
            E L+   I   + P+ ++    +   Q+ + V++        V    V + AA  AL+ 
Sbjct: 60  REKLMEDQIRSVLTPVLARYLHPRQFVQICLQVLEAGESRDYTVKEVSVCVNAAVLALVD 119

Query: 141 SGLPFEGPVVGAQVDY--INGQYVLNPRLDEDQG 172
           +G+P      G  +       Q V+NP   +   
Sbjct: 120 AGVPLLSMCSGTCIGITTEGKQLVVNPTESQLAK 153


>gi|254827842|ref|ZP_05232529.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           FSL N3-165]
 gi|258600223|gb|EEW13548.1| S1 RNA binding domain-containing protein [Listeria monocytogenes
           FSL N3-165]
          Length = 725

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|313609765|gb|EFR85224.1| protein YhgF [Listeria monocytogenes FSL F2-208]
          Length = 725

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|290892911|ref|ZP_06555901.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J2-071]
 gi|290557487|gb|EFD91011.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J2-071]
          Length = 725

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|114565845|ref|YP_752999.1| exoribonuclease II [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336780|gb|ABI67628.1| RNAse R [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 705

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 26/229 (11%)

Query: 482 DEDHLGHMDFKVAGTDSGITAMQM-DMKIGGISENIMVMALQQAKRGRLHILNEMSKVL- 539
           DE+ +  ++  +A     I   ++  M   GI  +I     +Q     L IL  M     
Sbjct: 476 DEEAISELNKVLAVFGHKIKGHKVSPMLFQGILADIKGQPEEQMIS--LMILRSMKHASY 533

Query: 540 -SESRLQLGEFTPRVEIMAIPPDQIRNVIGM--------GGKVIRGIVEQTGAKVNIDDD 590
             E R   G  +P       P  +  ++I          GG   R        K+ I  +
Sbjct: 534 LPEPRGHFGLASPYYCHFTSPIRRYPDLIVHRVLSSLLDGGMTTRKKSS-LEKKMTIYGE 592

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
            +      +        ++ ++      V   +  ++  V  FG FV      +GLVHIS
Sbjct: 593 QSSLQEMKAEEAERELLDVKKAQYMSQFVGDEFSARISSVQAFGFFVALENTVEGLVHIS 652

Query: 651 QLSTE-----------RVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
            ++ +           R   +      GD V V+L+  D D GKI   +
Sbjct: 653 SIADDYYLFSDRTYTLRGRHSGRKFAIGDQVRVQLVRVDVDEGKIDFEL 701


>gi|46907130|ref|YP_013519.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46880397|gb|AAT03696.1| S1 RNA binding domain protein [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 725

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|88807700|ref|ZP_01123212.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
 gi|88788914|gb|EAR20069.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
          Length = 430

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S      AAR          EV ++ +G V  V  +G F+   G   GL+H S 
Sbjct: 301 TRKLVLSEKKAATAAR------FAELEVGQLVEGHVAAVKPYGLFIDL-GGISGLLHQSM 353

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           ++   +    +V   GD+V   + + D  RG+I L+  +++   G+ ++
Sbjct: 354 ITGGSLRSIREVFDHGDSVKALITELDPGRGRIALNTAMLEGQPGELLI 402


>gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
           11486]
 gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
           11486]
          Length = 289

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 44/275 (16%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L K  R+DGR     R I+  +  +++  GSS  I G TQ I  V     + E      
Sbjct: 22  LLKKGERIDGRGLLDYRPINVYLNPIEKADGSSHVILGTTQVITGV-----KIELGEPFA 76

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTL--- 423
                    +H  F+P A  +    G P    I   R+  R++    P+   F   +   
Sbjct: 77  DRPDEGVLQVHAEFVPLA-SQTFEPGPPDENSIEVARVVDRSLRE--PKAIDFKQLVVAP 133

Query: 424 -----RIVSEI-TESDGSSSMA-TVCGSSLALMDAGV----------------------P 454
                 + ++I     G + M  ++  S LAL  A +                      P
Sbjct: 134 GKKVWVVFNDIYLIDHGGNIMDASMLSSMLALATAKIPYYEEKEPGVYVVDNKRHTSPLP 193

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           ++  VA + MG+ +D    +I+ D S +E+ + +    +A  + G         I G+S+
Sbjct: 194 VNTLVATVTMGIHED----VIIVDPSIEEEVVLNTFLTIAVDEKGRVCGIQKKGIAGLSK 249

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF 549
            ++  A++ A      +++ + K+L+     +   
Sbjct: 250 KMLDQAVEIALNKGGFLIDLIRKILNNPSDYMKPL 284


>gi|255026029|ref|ZP_05298015.1| hypothetical protein LmonocytFSL_06170 [Listeria monocytogenes FSL
           J2-003]
          Length = 725

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|47092106|ref|ZP_00229899.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47019546|gb|EAL10286.1| S1 RNA binding domain protein [Listeria monocytogenes str. 4b
           H7858]
 gi|328467054|gb|EGF38149.1| hypothetical protein LM1816_06915 [Listeria monocytogenes 1816]
          Length = 725

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|219127458|ref|XP_002183952.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404675|gb|EEC44621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 966

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
            +G V  + DFGAFV F G  DGL+HISQ+   RVA   D +  G  + + ++   D  K
Sbjct: 727 VQGTVRNLADFGAFVDFGGPHDGLLHISQMMANRVA--LDTLLIGQGIGIDIVSVQDH-K 783

Query: 683 IKLSM 687
           + L++
Sbjct: 784 VSLAL 788


>gi|226223517|ref|YP_002757624.1| hypothetical protein Lm4b_00916 [Listeria monocytogenes Clip81459]
 gi|254823833|ref|ZP_05228834.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J1-194]
 gi|254852392|ref|ZP_05241740.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL R2-503]
 gi|254931281|ref|ZP_05264640.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           HPB2262]
 gi|254993532|ref|ZP_05275722.1| hypothetical protein LmonocytoFSL_11467 [Listeria monocytogenes FSL
           J2-064]
 gi|255521162|ref|ZP_05388399.1| hypothetical protein LmonocFSL_08046 [Listeria monocytogenes FSL
           J1-175]
 gi|300764107|ref|ZP_07074102.1| hypothetical protein LMHG_10081 [Listeria monocytogenes FSL N1-017]
 gi|225875979|emb|CAS04683.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605698|gb|EEW18306.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL R2-503]
 gi|293582830|gb|EFF94862.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           HPB2262]
 gi|293593056|gb|EFG00817.1| S1 RNA-binding domain-containing protein [Listeria monocytogenes
           FSL J1-194]
 gi|300515097|gb|EFK42149.1| hypothetical protein LMHG_10081 [Listeria monocytogenes FSL N1-017]
 gi|332311305|gb|EGJ24400.1| S1 RNA binding domain protein [Listeria monocytogenes str. Scott A]
          Length = 725

 Score = 54.5 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|315281580|ref|ZP_07870181.1| protein YhgF [Listeria marthii FSL S4-120]
 gi|313614789|gb|EFR88332.1| protein YhgF [Listeria marthii FSL S4-120]
          Length = 725

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           ++ + S+ D+ +  ++ +G V  V+DFGAFV     +DGLVHIS+LS   V    DVV  
Sbjct: 637 KQDVISMEDLKQGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSV 695

Query: 667 GDTVWVKLLDFD-DRGKIKLSM 687
           GD V V + + D  + +I L+M
Sbjct: 696 GDVVTVWVDEVDTKKNRIALTM 717


>gi|183220249|ref|YP_001838245.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910367|ref|YP_001961922.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775043|gb|ABZ93344.1| 30S Ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778671|gb|ABZ96969.1| 30S ribosomal protein S1 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 385

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 15/210 (7%)

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLG 547
           H+       +SG       +    ++E  + +A Q        +L E S           
Sbjct: 69  HIVVYFLKENSGDFYFTTCLSADNLTEENLELANQFEIPVLGQMLQEGSGGWDVKLGSYT 128

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
            F P      +        IG  GK I+ I+ + G K N       KI  S     +  R
Sbjct: 129 AFVPFS---QLDVSLKGKNIG--GKRIKFIISELGKKQN-------KILLSQKKIADKER 176

Query: 608 EMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
           E  + +  D  +V       V  +  FG  V      D LV  S+ + ++    +   + 
Sbjct: 177 ETKKQLLRDELKVGMFVSCNVKSIHKFGLIVDM-DGLDALVPQSEATYKKNPDLTTEFRV 235

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTG 695
           G+T+  K+L  D    KI LS+K    +  
Sbjct: 236 GETLRAKILTLDWSTNKISLSVKDFLSDPW 265



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           + + I  G V  +  FG FV       GLV   +    +    + V + G  + V +L+ 
Sbjct: 272 KESDIVSGTVESIKPFGLFVRLGEDFSGLVPNKESGVPQRTPLNTVFQPGQKLEVFVLEI 331

Query: 678 DDRGK-IKLSM-KVVD 691
           +   + I LS+ K  +
Sbjct: 332 NPEKRQIALSITKAAE 347


>gi|120404179|ref|YP_954008.1| RNA-binding S1 domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956997|gb|ABM14002.1| RNA binding S1 domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 785

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
                 +V  I +G V  V  FGAFV     +DGLVH+S ++   ++   +VV+ G
Sbjct: 654 EKVADLKVGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYISDPHEVVRSG 709


>gi|313125280|ref|YP_004035544.1| DNA-directed RNA polymerase, subunit e' [Halogeometricum
           borinquense DSM 11551]
 gi|312291645|gb|ADQ66105.1| DNA-directed RNA polymerase, subunit E' [Halogeometricum
           borinquense DSM 11551]
          Length = 192

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 18/99 (18%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD----- 662
               ++T  P++ ++  G+VV+V++FGAFV      DGL+H+SQ+S E +A   +     
Sbjct: 70  AEFDAVTFDPDMQEVIDGEVVEVVEFGAFVGIGP-VDGLLHVSQISDEYLAYDGENQQLA 128

Query: 663 ------VVKEGDTVWVKLL--DFDDRG----KIKLSMKV 689
                  +  GD+V V+++    D+R     KI L+ K 
Sbjct: 129 STESNRTLAVGDSVRVRVVTKSIDERNPRDSKIGLTAKQ 167


>gi|15896453|ref|NP_349802.1| hypothetical protein CA_C3206 [Clostridium acetobutylicum ATCC 824]
 gi|15026277|gb|AAK81142.1|AE007816_6 Ribosomal protein S1 domain family protein [Clostridium
           acetobutylicum ATCC 824]
 gi|325510611|gb|ADZ22247.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 135

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
              +   I  G +V + +FGAFV     + GLVHIS+++   V    D +KE D V VK+
Sbjct: 1   MTLKAGSILTGTIVNITNFGAFVEV-DGKTGLVHISEVADSFVKDIHDHLKEKDKVKVKV 59

Query: 675 LDFDDRGKIKLSMKV 689
           L  DD GKI LS+K 
Sbjct: 60  LSVDDNGKISLSIKQ 74


>gi|163789858|ref|ZP_02184294.1| S1 RNA binding domain protein [Carnobacterium sp. AT7]
 gi|159874798|gb|EDP68866.1| S1 RNA binding domain protein [Carnobacterium sp. AT7]
          Length = 725

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 79/189 (41%), Gaps = 23/189 (12%)

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIP 559
           I   +  +   GI       A +Q        L ++  + ++  L+  + +   E + + 
Sbjct: 554 IIGGKNVLDNTGIHPETYKEA-KQILESAGLALADIGSMEAKKVLEKMDLSALAEQVELG 612

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            + +++++             +    ++ D+    +  + +  +E     +         
Sbjct: 613 KETVKDMV----------QALSKPGRDLRDELAAPLLRTDVLSMEDLIPGME-------- 654

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
               +G V  V+DFGAFV     +DG+VHIS+LS   V   ++VV  GD V V + + D 
Sbjct: 655 ---LEGTVRNVVDFGAFVDVGVKQDGMVHISKLSKGYVQHPTNVVSVGDVVTVWVDNVDL 711

Query: 679 DRGKIKLSM 687
            +G+I L+M
Sbjct: 712 KKGRIALTM 720


>gi|116331858|ref|YP_801576.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125547|gb|ABJ76818.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 381

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 18/222 (8%)

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG       ++      D G       +    ++++++ +A +         + E     
Sbjct: 62  SGLPKQGNEIEAYFLKEDHGDIHFTTCLSGDSLNKDLLEIAKRAEIPVLGQFIGENDSGA 121

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
                +   F P      I P+  ++  G+ GK  + +++ T            K   S 
Sbjct: 122 EVKIGEFTAFCPFS---QIDPEFKKS--GLSGKRSKFLIQDT----------RGKFVVSQ 166

Query: 600 LAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               + A+E    I     +       +V  + +FG  V        L+ IS+ + ++  
Sbjct: 167 KKISDKAKEAKLGILKQELKEGMFVTCKVKTIQNFGLIVEM-DGLTALIPISEATYKKNP 225

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +     + G T+  ++L  D +  K  L++K   ++     V
Sbjct: 226 ELEKEFQVGQTLRARILRIDWENQKFALTVKDFLKDPWAQTV 267



 Score = 46.4 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T   +   I KG +  +  FG FV      +GLV   +         +   K G
Sbjct: 260 KDPWAQTVPFKEGDIVKGTIDSLKPFGLFVKLDDHFNGLVPARETGIPNRVPLTQSFKPG 319

Query: 668 DTVWVKLLDFDDRGK-IKLSM---KVVDQ 692
           + + V +++ +   K I LS+   K + +
Sbjct: 320 EVIDVFVMEVNPEKKQISLSIQKAKEIQE 348


>gi|255280488|ref|ZP_05345043.1| putative S1 RNA binding domain protein [Bryantella formatexigens
           DSM 14469]
 gi|255268953|gb|EET62158.1| putative S1 RNA binding domain protein [Bryantella formatexigens
           DSM 14469]
          Length = 354

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++++++    I S+     E   E  ++     EV  + +G V  +  +GAF++      
Sbjct: 216 IDVNEEDKKLILSAREILREREAEEKKARISNVEVGLVTEGTVESLQPYGAFINLGNGLS 275

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
           GLVH+SQ+S +R+   S V+K GD V VK++   D GK+ LSMK +     + I
Sbjct: 276 GLVHVSQISEKRIKSPSAVLKVGDKVKVKVIAVKD-GKLSLSMKALQDVAAEEI 328


>gi|329766743|ref|ZP_08258286.1| RNA-binding S1 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136998|gb|EGG41291.1| RNA-binding S1 domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 265

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M   + ++PE  +I    + KVMD GA+V         G +HIS+++   +   S  VK+
Sbjct: 1   MSTEVQEMPEQGEIVLATITKVMDHGAYVTLDEYNGIQGFLHISEIAPGWIRSVSKFVKD 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G+   + +   + DRG I LS+K V ++
Sbjct: 61  GEKKVLLVKKVNQDRGDIDLSLKQVSKD 88


>gi|146414660|ref|XP_001483300.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146391773|gb|EDK39931.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 252

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 22/182 (12%)

Query: 303 VRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQY 362
           V + +  +    D   +++   +  + GL+    GS+ ++  D   + V   G R     
Sbjct: 22  VSSSLEREMKSPDEETAKS--SMFLKTGLVDTASGSA-YVEADDCIVQVSVYGPRP---- 74

Query: 363 VDSLSGTQRNDFMMHYNFLPCAT------GEVSRMGAPSRREIG--HGRLARRAIHPVLP 414
           +   S  ++  F +   FLP  T         +  G P    I          A+ P L 
Sbjct: 75  IRG-SFIEKASFSVECKFLPYVTKVAAEHQNTNPNGKPGMNSIEQRISTYVETALLPCLL 133

Query: 415 QTAQFPYTLRIVSEITESDGSSSMATVCG-----SSLALMDAGVPISKPVAGIAMGLVKD 469
                  T+ I   +  ++ S+S+  +       SSLAL+D+ + I   V G    +  +
Sbjct: 134 LENYPKSTIDIYVTVI-ANKSASLLELTNWIVNCSSLALVDSAIEIKDIVTGGVATIEDE 192

Query: 470 GD 471
            D
Sbjct: 193 ND 194


>gi|229020334|ref|ZP_04177100.1| Ribonuclease R [Bacillus cereus AH1273]
 gi|229026565|ref|ZP_04182914.1| Ribonuclease R [Bacillus cereus AH1272]
 gi|228734742|gb|EEL85387.1| Ribonuclease R [Bacillus cereus AH1272]
 gi|228740970|gb|EEL91202.1| Ribonuclease R [Bacillus cereus AH1273]
          Length = 808

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|116327529|ref|YP_797249.1| 30S ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120273|gb|ABJ78316.1| 30S Ribosomal protein S1 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 381

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 18/222 (8%)

Query: 480 SGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539
           SG       ++      D G       +    ++++++ +A +         + E     
Sbjct: 62  SGLPKQGNEIEAYFLKEDHGDIHFTTCLSGDSLNKDLLEIAKRAEIPVLGQFIGENDSGA 121

Query: 540 SESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSS 599
                +   F P      I P+  ++  G+ GK  + +++ T            K   S 
Sbjct: 122 EVKIGEFTAFCPFS---QIDPEFKKS--GLSGKRSKFLIQDT----------RGKFVVSQ 166

Query: 600 LAEIEAAREMIRSI-TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA 658
               + A+E    I     +       +V  + +FG  V        L+ IS+ + ++  
Sbjct: 167 KKISDKAKEAKLGILKQELKEGMFVTCKVKTIQNFGLIVEM-DGLTALIPISEATYKKNP 225

Query: 659 KTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +     + G T+  ++L  D +  K  L++K   ++     V
Sbjct: 226 ELEKEFQVGQTLRARILRIDWENQKFALTVKDFLKDPWAQTV 267



 Score = 46.4 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +   + T   +   I KG +  +  FG FV      +GLV   +         +   K G
Sbjct: 260 KDPWAQTVPFKEGDIVKGTIDSLKPFGLFVKLDDHFNGLVPARETGIPNRVPLTQSFKPG 319

Query: 668 DTVWVKLLDFDDRGK-IKLSM---KVVDQ 692
           + + V +++ +   K I LS+   K + +
Sbjct: 320 EVIDVFVMEVNPEKKQISLSIQKAKEIQE 348


>gi|115960400|ref|XP_001175624.1| PREDICTED: similar to ENSANGP00000026025, partial
           [Strongylocentrotus purpuratus]
          Length = 104

 Score = 54.5 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +L++  R DGR    +R I  + G + +  GS      +T+ I  V  G RE  +  D  
Sbjct: 1   LLEEGKRQDGRSPLEIRPIFLKAGAVSQAKGSCYMEMKNTKVICAV-YGPREVPRR-DGF 58

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
               +      + F   A  EV      S  E       ++A+ P +
Sbjct: 59  VINGQ--LRCEFKFATFA-SEVRHGHLTSHTEKDLALQVQQALEPAV 102



 Score = 43.7 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP---LTVNYQERTYA 69
          RP+ L+ G ++ Q+ G+       T V+  V   R +     F     L   ++  T+A
Sbjct: 17 RPIFLKAGAVS-QAKGSCYMEMKNTKVICAVYGPREVPRRDGFVINGQLRCEFKFATFA 74


>gi|229014286|ref|ZP_04171405.1| Ribonuclease R [Bacillus mycoides DSM 2048]
 gi|228746886|gb|EEL96770.1| Ribonuclease R [Bacillus mycoides DSM 2048]
          Length = 812

 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229135929|ref|ZP_04264691.1| Ribonuclease R [Bacillus cereus BDRD-ST196]
 gi|228647542|gb|EEL03615.1| Ribonuclease R [Bacillus cereus BDRD-ST196]
          Length = 812

 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|163942813|ref|YP_001647697.1| ribonuclease R [Bacillus weihenstephanensis KBAB4]
 gi|163865010|gb|ABY46069.1| ribonuclease R [Bacillus weihenstephanensis KBAB4]
          Length = 814

 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|293568732|ref|ZP_06680047.1| ribonuclease R [Enterococcus faecium E1071]
 gi|291588692|gb|EFF20525.1| ribonuclease R [Enterococcus faecium E1071]
          Length = 596

 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 419 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 478

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 479 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 522


>gi|228910937|ref|ZP_04074746.1| Ribonuclease R [Bacillus thuringiensis IBL 200]
 gi|228848888|gb|EEM93733.1| Ribonuclease R [Bacillus thuringiensis IBL 200]
          Length = 812

 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|255513441|gb|EET89707.1| RNA binding S1 domain protein [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 265

 Score = 54.5 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
           ++P++N +   +V K+  FGA+      G  +  + + ++S+  +    + + +   +  
Sbjct: 5   NLPKINSLAIAEVSKITRFGAYCKLPEYGGLEVFLPLREISSGWIKNIHEFLHQNQRIVC 64

Query: 673 KLLDFDDRGK-IKLSMKVVDQNTGKP 697
           K++  D+  K I +S+K V     K 
Sbjct: 65  KIIYIDNEKKTIDVSLKKVTPKDSKE 90


>gi|228936413|ref|ZP_04099211.1| Ribonuclease R [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228823245|gb|EEM69079.1| Ribonuclease R [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 806

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|261418556|ref|YP_003252238.1| transcriptional accessory protein Tex [Geobacillus sp. Y412MC61]
 gi|319765370|ref|YP_004130871.1| Tex-like protein [Geobacillus sp. Y412MC52]
 gi|261375013|gb|ACX77756.1| Tex-like protein protein-like protein [Geobacillus sp. Y412MC61]
 gi|317110236|gb|ADU92728.1| Tex-like protein [Geobacillus sp. Y412MC52]
          Length = 721

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           I E T    +I D              +          +  +     +G V  V+DFGAF
Sbjct: 607 IGELTLR--DIIDALCRPERDPRDELPKPLLRKDVLKMEDLKPGMELEGTVRNVVDFGAF 664

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           V     +DGLVHIS+LS + V    DVV  GD V V +   D  +G+I LSM
Sbjct: 665 VDIGVKQDGLVHISKLSKQYVRHPLDVVSVGDVVKVWVEHVDVAKGRISLSM 716


>gi|288932804|ref|YP_003436864.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
 gi|288895052|gb|ADC66589.1| phosphoesterase RecJ domain protein [Ferroglobus placidus DSM
           10642]
          Length = 691

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G+  + +    +  A         +   +N++Y G+VV + D GAFV       GL+H  
Sbjct: 87  GSSDLCNECRKKPHAYLLRNSCGIEDIRLNRVYVGKVVSLTDIGAFVQLNKRLKGLIHKK 146

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687
            L           + EGD V VK+      G+I L +
Sbjct: 147 NLKN-------AYLNEGDEVTVKVTSIRPSGEIDLEL 176


>gi|47567335|ref|ZP_00238048.1| exoribonuclease, VacB/RNase II family [Bacillus cereus G9241]
 gi|47555956|gb|EAL14294.1| exoribonuclease, VacB/RNase II family [Bacillus cereus G9241]
          Length = 793

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 591 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 650

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 651 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 690


>gi|48477938|ref|YP_023644.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
           9790]
 gi|48430586|gb|AAT43451.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
           9790]
          Length = 195

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 63/147 (42%), Gaps = 22/147 (14%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++ ++    G+ +      +   + +  DGT+               +  +I   P++
Sbjct: 35  VGKLVDINDSTGRNMGKCFIVSIENIELVGDGTI----VHGDGGVYQDVVYTAIAYYPKM 90

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ---------LSTERV--AKTSDVVKEGD 668
           +++  G V+ +  FGAFV F    +GL+HISQ         ++ +R     T + +K GD
Sbjct: 91  HEVVDGVVISIQKFGAFVKFGPF-EGLLHISQIMDDIINIDMANQRFVGRDTKEDLKIGD 149

Query: 669 TVWVKLLDFD------DRGKIKLSMKV 689
            + V+++  +      +  KI L+ K 
Sbjct: 150 KIRVRIVAMNLSSSSIEDAKIGLTAKQ 176


>gi|321263017|ref|XP_003196227.1| hypothetical Protein CGB_I3550C [Cryptococcus gattii WM276]
 gi|317462702|gb|ADV24440.1| conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 268

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 83/237 (35%), Gaps = 17/237 (7%)

Query: 321 TVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNF 380
             R I  + GL+ + HGS     G  +    V  G R           + +    +   F
Sbjct: 41  ESRPIFLKTGLISQAHGSGYIEAGGVKIACSV-YGPRPK-----PPPYSPQGTLNLEVKF 94

Query: 381 LPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESD--GSSSM 438
            P A  +  R        +    L  + + P L        ++ +   + ESD   +   
Sbjct: 95  APFA-SDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLESDTLTNVLS 153

Query: 439 ATVCGSSLALMDAGVPISKP-VAGIAMGLVKDGDDF--IILSDISGDEDHLGHMDFKVAG 495
           A +  +S A+ DAG+ ++   V G+   L  D       ++ D S +E+    +   V  
Sbjct: 154 AGLTVASAAVADAGIEMAGLGVGGVVASLGADEKQGKKRVVIDPSLEEEKESDVKVMVGT 213

Query: 496 TD--SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT 550
               S +T + +    G I  +     ++QA        + +++ L E   + G   
Sbjct: 214 MPALSKVTNVWLT---GEIEVDEACNMIEQAFEASKQTHSVVAEALVEGAGERGIAA 267



 Score = 41.4 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 16/225 (7%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVY-DRSLKDGQDFFPLTVNYQERTYAVGK 72
           RP+ L+TG I+ Q+ G+     G   +  +V               L +  +   +A   
Sbjct: 43  RPIFLKTGLIS-QAHGSGYIEAGGVKIACSVYGPRPKPPPYSPQGTLNLEVKFAPFASDP 101

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMV 132
                   E  P  N +    +    +        K+   V + V++ D  ++     + 
Sbjct: 102 RRAPLRDTEPLPLSNLLTQLLLPTLHL----HLLPKSSIDVYLLVLESDTLTNVLSAGLT 157

Query: 133 AASAALMLSGLPFEGP-VVGAQVDYINGQY------VLNPRLDEDQGSLDLFVSGTQDAV 185
            ASAA+  +G+   G  V G        +       V++P L+E++ S    + GT  A+
Sbjct: 158 VASAAVADAGIEMAGLGVGGVVASLGADEKQGKKRVVIDPSLEEEKESDVKVMVGTMPAL 217

Query: 186 --LMVELEANQLSEDVVLDAIIFGHNECKPVIEAISK-LAKMCAK 227
             +       ++  D   + I       K     +++ L +   +
Sbjct: 218 SKVTNVWLTGEIEVDEACNMIEQAFEASKQTHSVVAEALVEGAGE 262


>gi|240102556|ref|YP_002958865.1| DNA-directed RNA polymerase subunit E' [Thermococcus gammatolerans
           EJ3]
 gi|239910110|gb|ACS33001.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Thermococcus
           gammatolerans EJ3]
          Length = 186

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 544 LQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEI 603
             +    PR+  M   P +   ++  G        ++      +D +   +         
Sbjct: 8   KDVVRIPPRMFTM--DPKEAAKLVLRGTYEGIYDRDEGVVLAVLDVEEVSEGVIVPGDGA 65

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV------ 657
                +   +   P ++++ +G+V+ V  +GAFV      DGLVHISQL  + V      
Sbjct: 66  TYHEVVFNVLVWQPFMHEVVEGEVIDVAPYGAFVRIGPM-DGLVHISQLMDDYVVFDEKN 124

Query: 658 -----AKTSDVVKEGDTVWVKLLDFD------DRGKIKLSMKV 689
                 +T  ++K GD V  +++            KI L+M+ 
Sbjct: 125 KQFLGKETKRILKLGDEVRARVIAISVKSRVIRENKIGLTMRQ 167


>gi|229062770|ref|ZP_04200075.1| Ribonuclease R [Bacillus cereus AH603]
 gi|228716530|gb|EEL68233.1| Ribonuclease R [Bacillus cereus AH603]
          Length = 816

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229169830|ref|ZP_04297526.1| Ribonuclease R [Bacillus cereus AH621]
 gi|228613544|gb|EEK70673.1| Ribonuclease R [Bacillus cereus AH621]
          Length = 814

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|218900250|ref|YP_002448661.1| ribonuclease R [Bacillus cereus G9842]
 gi|228903602|ref|ZP_04067723.1| Ribonuclease R [Bacillus thuringiensis IBL 4222]
 gi|228968209|ref|ZP_04129208.1| Ribonuclease R [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218543397|gb|ACK95791.1| ribonuclease R [Bacillus cereus G9842]
 gi|228791472|gb|EEM39075.1| Ribonuclease R [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856031|gb|EEN00570.1| Ribonuclease R [Bacillus thuringiensis IBL 4222]
          Length = 812

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229105728|ref|ZP_04236357.1| Ribonuclease R [Bacillus cereus Rock3-28]
 gi|228677617|gb|EEL31865.1| Ribonuclease R [Bacillus cereus Rock3-28]
          Length = 812

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229158693|ref|ZP_04286751.1| Ribonuclease R [Bacillus cereus ATCC 4342]
 gi|228624677|gb|EEK81446.1| Ribonuclease R [Bacillus cereus ATCC 4342]
          Length = 808

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229164066|ref|ZP_04292003.1| Ribonuclease R [Bacillus cereus R309803]
 gi|228619449|gb|EEK76338.1| Ribonuclease R [Bacillus cereus R309803]
          Length = 810

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|196032970|ref|ZP_03100383.1| ribonuclease R [Bacillus cereus W]
 gi|228961348|ref|ZP_04122964.1| Ribonuclease R [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229147655|ref|ZP_04275998.1| Ribonuclease R [Bacillus cereus BDRD-ST24]
 gi|195994399|gb|EDX58354.1| ribonuclease R [Bacillus cereus W]
 gi|228635668|gb|EEK92155.1| Ribonuclease R [Bacillus cereus BDRD-ST24]
 gi|228798356|gb|EEM45353.1| Ribonuclease R [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 806

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|218906302|ref|YP_002454136.1| ribonuclease R [Bacillus cereus AH820]
 gi|228917732|ref|ZP_04081273.1| Ribonuclease R [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228948832|ref|ZP_04111107.1| Ribonuclease R [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124630|ref|ZP_04253815.1| Ribonuclease R [Bacillus cereus 95/8201]
 gi|218535287|gb|ACK87685.1| ribonuclease R [Bacillus cereus AH820]
 gi|228658970|gb|EEL14625.1| Ribonuclease R [Bacillus cereus 95/8201]
 gi|228810794|gb|EEM57140.1| Ribonuclease R [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228841969|gb|EEM87075.1| Ribonuclease R [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 806

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|228942262|ref|ZP_04104801.1| Ribonuclease R [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975192|ref|ZP_04135750.1| Ribonuclease R [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981830|ref|ZP_04142125.1| Ribonuclease R [Bacillus thuringiensis Bt407]
 gi|228777942|gb|EEM26214.1| Ribonuclease R [Bacillus thuringiensis Bt407]
 gi|228784471|gb|EEM32492.1| Ribonuclease R [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817306|gb|EEM63392.1| Ribonuclease R [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326942917|gb|AEA18813.1| exoribonuclease II [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 814

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229099553|ref|ZP_04230481.1| Ribonuclease R [Bacillus cereus Rock3-29]
 gi|229118618|ref|ZP_04247970.1| Ribonuclease R [Bacillus cereus Rock1-3]
 gi|228664810|gb|EEL20300.1| Ribonuclease R [Bacillus cereus Rock1-3]
 gi|228683849|gb|EEL37799.1| Ribonuclease R [Bacillus cereus Rock3-29]
          Length = 810

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|116333316|ref|YP_794843.1| exoribonuclease R [Lactobacillus brevis ATCC 367]
 gi|116098663|gb|ABJ63812.1| Exoribonuclease R [Lactobacillus brevis ATCC 367]
          Length = 797

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 587 IDDDGTVKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
           I ++  V  + +    I+A R+   M  +      V + +   V  VM FG FV      
Sbjct: 601 ILEEIGVHTSEAERRAIDAERDTNDMKMAEYMADHVGEEFDAVVSSVMKFGMFVELPNTI 660

Query: 644 DGLVHISQLST---ERVAKTSDVV--------KEGDTVWVKLLDFDD 679
           +GL+HIS++     E V K   +V        + G  + VK++  D 
Sbjct: 661 EGLIHISRMQDDYYEYVEKYMALVGRNTRRTYRIGQEIRVKVIHVDK 707


>gi|291536097|emb|CBL09209.1| Ribosomal protein S1 [Roseburia intestinalis M50/1]
          Length = 237

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 10/145 (6%)

Query: 517 MVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRG 576
           +  A +  +     +   +   L     +   F P      +     +++     + I  
Sbjct: 100 LEEAFENKEVLTAKVAQVLDGGLCVIVDETRVFIPASL---VSDSYEKDLSKYKDQDIEF 156

Query: 577 IVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAF 636
           ++ +   K          I       +    E  + +    +V  + +G V  V DFGAF
Sbjct: 157 VISEFNPKR------RRIIGDRKQLLVAKKLEQQKELFAKIKVGDVMEGTVKNVTDFGAF 210

Query: 637 VHFCGARDGLVHISQLSTERVAKTS 661
           +   GA DGL+HIS++S  RV    
Sbjct: 211 IDLGGA-DGLLHISEMSWGRVESPK 234



 Score = 41.4 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +M+          ++ +G V+ V      ++     DG++  ++ + E     + +V  G
Sbjct: 8   QMLEESFKTIRNGEVVEGTVIDVKPDEIVLNIGYKSDGIITRNEYTNEANVDLTTLVSVG 67

Query: 668 DTVWVKLLDF-DDRGKIKLSMKVVDQNTG 695
           DT+  K+L   D  G++ L+ K +    G
Sbjct: 68  DTMEAKVLKVNDGEGQVLLTYKRLAAEKG 96


>gi|78778915|ref|YP_397027.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
 gi|78712414|gb|ABB49591.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
          Length = 404

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           ++ ++ +G+V+ V  +G F+   GA  GL+H S L+   +    ++ +EG+ +   + + 
Sbjct: 296 DLGQLIEGEVLAVKPYGFFIDLGGA-SGLLHQSSLTKGSIRSLREIFREGEIIKALISEI 354

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D ++G+I L+  +++ + G+ I+
Sbjct: 355 DLEKGRIGLNTALLENSAGELII 377


>gi|33239981|ref|NP_874923.1| ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237507|gb|AAP99575.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 417

 Score = 54.1 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             EV ++ +G+V+ V  +G FV   G   GL+H S ++   +    +V  +GD V   + 
Sbjct: 306 ELEVGQLIEGKVISVKPYGFFVDL-GGISGLLHQSMITNGSLRSLREVFNQGDNVKALIT 364

Query: 676 DFDD-RGKIKL 685
           D D  RG+I L
Sbjct: 365 DLDPARGRIGL 375


>gi|228930128|ref|ZP_04093138.1| Ribonuclease R [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228829627|gb|EEM75254.1| Ribonuclease R [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 808

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229072576|ref|ZP_04205778.1| Ribonuclease R [Bacillus cereus F65185]
 gi|229082335|ref|ZP_04214798.1| Ribonuclease R [Bacillus cereus Rock4-2]
 gi|229181384|ref|ZP_04308712.1| Ribonuclease R [Bacillus cereus 172560W]
 gi|228601959|gb|EEK59452.1| Ribonuclease R [Bacillus cereus 172560W]
 gi|228700767|gb|EEL53290.1| Ribonuclease R [Bacillus cereus Rock4-2]
 gi|228710552|gb|EEL62525.1| Ribonuclease R [Bacillus cereus F65185]
          Length = 808

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229193875|ref|ZP_04320798.1| Ribonuclease R [Bacillus cereus ATCC 10876]
 gi|228589613|gb|EEK47509.1| Ribonuclease R [Bacillus cereus ATCC 10876]
          Length = 808

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|218235949|ref|YP_002369900.1| ribonuclease R [Bacillus cereus B4264]
 gi|229049782|ref|ZP_04194339.1| Ribonuclease R [Bacillus cereus AH676]
 gi|229112537|ref|ZP_04242074.1| Ribonuclease R [Bacillus cereus Rock1-15]
 gi|229130374|ref|ZP_04259332.1| Ribonuclease R [Bacillus cereus BDRD-Cer4]
 gi|229153279|ref|ZP_04281457.1| Ribonuclease R [Bacillus cereus m1550]
 gi|218163906|gb|ACK63898.1| ribonuclease R [Bacillus cereus B4264]
 gi|228629883|gb|EEK86534.1| Ribonuclease R [Bacillus cereus m1550]
 gi|228653073|gb|EEL08953.1| Ribonuclease R [Bacillus cereus BDRD-Cer4]
 gi|228670917|gb|EEL26224.1| Ribonuclease R [Bacillus cereus Rock1-15]
 gi|228722695|gb|EEL74083.1| Ribonuclease R [Bacillus cereus AH676]
          Length = 808

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|206970165|ref|ZP_03231118.1| ribonuclease R [Bacillus cereus AH1134]
 gi|206734742|gb|EDZ51911.1| ribonuclease R [Bacillus cereus AH1134]
          Length = 810

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|52140440|ref|YP_086389.1| ribonuclease R (RNase R) [Bacillus cereus E33L]
 gi|196039457|ref|ZP_03106762.1| ribonuclease R [Bacillus cereus NVH0597-99]
 gi|229094215|ref|ZP_04225294.1| Ribonuclease R [Bacillus cereus Rock3-42]
 gi|51973909|gb|AAU15459.1| ribonuclease R (RNase R) [Bacillus cereus E33L]
 gi|196029617|gb|EDX68219.1| ribonuclease R [Bacillus cereus NVH0597-99]
 gi|228689207|gb|EEL43029.1| Ribonuclease R [Bacillus cereus Rock3-42]
          Length = 810

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|30023166|ref|NP_834797.1| exoribonuclease II [Bacillus cereus ATCC 14579]
 gi|29898726|gb|AAP11998.1| Exoribonuclease II [Bacillus cereus ATCC 14579]
          Length = 808

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|296505529|ref|YP_003667229.1| exoribonuclease II [Bacillus thuringiensis BMB171]
 gi|296326581|gb|ADH09509.1| exoribonuclease II [Bacillus thuringiensis BMB171]
          Length = 806

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|228955358|ref|ZP_04117364.1| Ribonuclease R [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804305|gb|EEM50918.1| Ribonuclease R [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 812

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|212640318|ref|YP_002316838.1| Exoribonuclease R [Anoxybacillus flavithermus WK1]
 gi|212561798|gb|ACJ34853.1| Exoribonuclease R [Anoxybacillus flavithermus WK1]
          Length = 758

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++     + G++     ++   K+    + T  +   ++       ++ ++     ++
Sbjct: 563 VHRLIRTYLINGQIDEQTQQKWAEKLPEIAEHTSNMERRAVEAERETDDLKKTEFMEDKI 622

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
              + G +  V +FG FV      +GLVH+S L+ +              +T  V + GD
Sbjct: 623 GMEFDGIISSVTNFGLFVELPNTVEGLVHVSYLTDDYYHYDEQHYAMIGERTGKVYRIGD 682

Query: 669 TVWVKLLDFDDRGKI 683
            + V++++ +   +I
Sbjct: 683 EITVRVINVNKEERI 697


>gi|228923838|ref|ZP_04087116.1| Ribonuclease R [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228835967|gb|EEM81330.1| Ribonuclease R [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 810

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229175792|ref|ZP_04303298.1| Ribonuclease R [Bacillus cereus MM3]
 gi|228607743|gb|EEK65059.1| Ribonuclease R [Bacillus cereus MM3]
          Length = 814

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229032741|ref|ZP_04188701.1| Ribonuclease R [Bacillus cereus AH1271]
 gi|228728568|gb|EEL79584.1| Ribonuclease R [Bacillus cereus AH1271]
          Length = 812

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|316977092|gb|EFV60250.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
          Length = 232

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 7/173 (4%)

Query: 337 GSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT---QRNDFMMHYNFLPCATG---EVSR 390
           GS+      T+ +  V +G RE  +  +   G          +   F P A     +  R
Sbjct: 36  GSAYIEMNKTKILCTV-IGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFAKTPRLQRRR 94

Query: 391 MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMD 450
                  E     L ++A   V+         + ++  I +  G+   A++   ++AL+ 
Sbjct: 95  KEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQDSGNVLCASLNCCTMALVS 154

Query: 451 AGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAM 503
           AG+ I   +   +  L    D+  +              +F  + +   I  M
Sbjct: 155 AGIEIYDLLTSASETLEDKSDNGTLTIGYMAKLHQHALTEFTGSASPQTIRKM 207



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 29  GAVLATYGETVVLATVVYDRSLKDGQ-DFF--------PLTVNYQERTYAVGKIPGGYLR 79
           G+      +T +L TV+  R       D           LTV+ +   +A  K P    R
Sbjct: 36  GSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFA--KTPRLQRR 93

Query: 80  RESRPTENEILISRMIDRSIRP--LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAA 137
           R+      E  ++ +I ++     L  +  K E  +II+++Q D  +     S+   + A
Sbjct: 94  RKEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQ-DSGNVLC-ASLNCCTMA 151

Query: 138 LMLSGL 143
           L+ +G+
Sbjct: 152 LVSAGI 157


>gi|119719552|ref|YP_920047.1| translation initiation factor IF-2 subunit alpha [Thermofilum
           pendens Hrk 5]
 gi|119524672|gb|ABL78044.1| translation initiation factor 2 subunit alpha (aeIF-2a)
           [Thermofilum pendens Hrk 5]
          Length = 265

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKE 666
           M+R   DVP +N++  G V+ + D GAFV     G     + + ++S        DV+K 
Sbjct: 1   MVRRREDVPSLNELVVGTVIDIQDHGAFVSLDEFGGLKAYIPLGEVSHSWFKNIRDVLKV 60

Query: 667 GDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
           G    +K++  D   K + +S++ V +   + 
Sbjct: 61  GRKYVLKVIRVDRNKKLVDVSLRRVSEKERRE 92


>gi|17511129|ref|NP_491362.1| hypothetical protein ZK973.1 [Caenorhabditis elegans]
 gi|7206846|gb|AAF40005.1| Hypothetical protein ZK973.1 [Caenorhabditis elegans]
          Length = 745

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 563 IRNVIG-MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK 621
           I ++ G +    I  +  +    +N+  + T+K        +      IR + +     +
Sbjct: 624 IEDITGRIKSFSISRLTAEEAKVLNLLQNLTLKTKMKPPPPLRTKVGQIRDLAE----GQ 679

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV-KEGDTVWVKLLDFDDR 680
            + G V    DFG F+     +DGL HIS          S ++    D+V V +    + 
Sbjct: 680 RFTGTVSNKTDFGVFIDIGVGQDGLAHISHFKD---GHYSLMLPSVNDSVEVVIDKIRED 736

Query: 681 GKIKLS 686
           GKI LS
Sbjct: 737 GKISLS 742


>gi|18976628|ref|NP_577985.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus DSM
           3638]
 gi|18892197|gb|AAL80380.1| DNA-directed RNA polymerase, subunit e' [Pyrococcus furiosus DSM
           3638]
          Length = 189

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 18/93 (19%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
              P+++++ +G V  VM FGAF+      DGLVHISQL  + V            +   
Sbjct: 76  VWEPKIHEVVEGYVADVMPFGAFIRIGP-IDGLVHISQLMDDYVVYDERNKQFVGKEKKY 134

Query: 663 VVKEGDTVWVKLLDFDDR------GKIKLSMKV 689
           ++K GD V  ++++   +       +I L+M+ 
Sbjct: 135 LLKIGDLVRARIINISAKSKVIRENRIGLTMRQ 167


>gi|119387163|ref|YP_918218.1| RNA-binding S1 domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119377758|gb|ABL72522.1| RNA binding S1 domain protein [Paracoccus denitrificans PD1222]
          Length = 770

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            +G V  V  FGAFV     +DGLVHISQL+   V   ++VVK GD V V++ + D  R 
Sbjct: 655 LEGTVTNVAAFGAFVDIGVHQDGLVHISQLADRFVKDPNEVVKVGDVVKVRVTEVDVARK 714

Query: 682 KIKLSMKVVDQNTGKP 697
           +I L+M+     + + 
Sbjct: 715 RIGLTMRKDGGASARD 730


>gi|20093597|ref|NP_613444.1| RecJ-like exonuclease [Methanopyrus kandleri AV19]
 gi|19886456|gb|AAM01374.1| Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn
           finger domain [Methanopyrus kandleri AV19]
          Length = 752

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 570 GGKVIRGIVEQTGAKVNID------DDGTVKIASSSLAEIEAAREMIRSITDV-PEVNKI 622
           GG        + G +++ D      ++   KI      ++   + +  +      E  ++
Sbjct: 80  GGTGYIVKCRECGKELDPDVEEDLCEECRKKIKQIRKEKLPKVKVLSPACGYEDVEEGEL 139

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
           YKG+V +V  +G F+       GL+H   +  +           GD V VK+ D   + G
Sbjct: 140 YKGKVSRVEKYGVFIELNDRTLGLLHRRDMGDKEPQD----FSIGDEVVVKVTDVRPEDG 195

Query: 682 KIKLSMKVVDQNTGK 696
           +I  +++ +D    +
Sbjct: 196 EIDFTIEGIDPRPDR 210


>gi|311031851|ref|ZP_07709941.1| ribonuclease R [Bacillus sp. m3-13]
          Length = 790

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ +S   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 605 NMERRAVEAERETDELKKSEYMLDKIGEEYDGIISSVTNFGMFVELPNTIEGLVHVSYLT 664

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T  V + GD + V++++ +   +
Sbjct: 665 DDYYRYDERHYAMIGERTGKVYRIGDEITVRVINVNKDER 704


>gi|156086764|ref|XP_001610789.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798042|gb|EDO07221.1| hypothetical protein BBOV_IV008670 [Babesia bovis]
          Length = 250

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 4/236 (1%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           K +R DGR+    R    ++  L RT  S     GD+     V          +   +  
Sbjct: 3   KSLRPDGRNLYDPRRFKVELNPL-RTGPSCRLTVGDSSPNSPVYRDRTSVISLIYFSADN 61

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +  + +  Y+           +G       G+  +  + +  ++  T+     +    +I
Sbjct: 62  KNRNTVGSYHRPTFEVYIRPAVGPVRGYIRGYECMLLKCMQSIIDGTSLGRVLVSARIQI 121

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDE---DHL 486
            E         +    ++L+ A +P+ +    I  G+ K  +   ++ + S +E      
Sbjct: 122 LEDGSGLLATCMNALIISLVVAALPLREIPHAIQFGITKSLESDSVIVEPSSEEIRTQCS 181

Query: 487 GHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
             +          I+ + +D   GG   N+       + +     LN +  V  E+
Sbjct: 182 TAVTMLCTPNSGSISFVSIDYGRGGYDANVQAQLEALSCKIADARLNYVGNVYREA 237


>gi|291556846|emb|CBL33963.1| Ribosomal protein S1 [Eubacterium siraeum V10Sc8a]
          Length = 307

 Score = 54.1 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           ID+ G+  +A  S     A  E  R          I   +V  +  FG FV        +
Sbjct: 94  IDETGSEPLAILSRKA--AQEEADREYVSKLIPGDIIGARVTHLEQFGCFVDIGCGIASM 151

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + I  +S  R+   ++    GD ++  +   D +G I L+ K +
Sbjct: 152 IPIDAISVSRIVHPANRFSVGDDIFAVVKGRD-QGHICLTHKEL 194


>gi|288818328|ref|YP_003432676.1| ribosomal protein S1 [Hydrogenobacter thermophilus TK-6]
 gi|288787728|dbj|BAI69475.1| ribosomal protein S1 [Hydrogenobacter thermophilus TK-6]
 gi|308751925|gb|ADO45408.1| RNA binding S1 domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 528

 Score = 54.1 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIM 556
           + GIT +   +    + +  +     +       I  ++   +             +  M
Sbjct: 194 EKGITLLVQGVLRAFLPKEELSWGRDKNPYNYAEIDEKLRVKVKRIPKDGEFIFVSLREM 253

Query: 557 AIPP-DQIRNVIGMGGKVIRGIVEQTG---------------AKVNIDDDGTVKIASSSL 600
              P D+I + I  G  +   +VE +                 K  I  DG++     S 
Sbjct: 254 KENPWDKIGDKINKGDTLSARVVEISDKGMLVELQEGVEGFVPKEEISYDGSISYRKGSE 313

Query: 601 AEI-----------------EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR 643
            ++                  A  +               KG+V ++    A V      
Sbjct: 314 VKVKVLEFEPSRRRLILSVKRALPKPWEEFFKDHPAGSRVKGRVERIEGAKALVDLGNGV 373

Query: 644 DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPI 698
            G+VH S LS  +  +  +V+KEG      +L  + +  IKL +K +  N  + I
Sbjct: 374 KGIVHRSDLSWVKPGRVEEVLKEGQEREFAVLALEGK-FIKLGLKQLTPNPWELI 427



 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 34/184 (18%)

Query: 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMA-----IPPDQIRNVIGMGGKVIRGIVEQT 581
            R  ++  + + L +   +  +  P    +      I   +    +G G K I    + +
Sbjct: 324 SRRRLILSVKRALPKPWEEFFKDHPAGSRVKGRVERIEGAKALVDLGNGVKGIVHRSDLS 383

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAR-----------------EMIRSITDVPEVNKIYK 624
             K      G V+       E E A                       IT    V +   
Sbjct: 384 WVKP-----GRVEEVLKEGQEREFAVLALEGKFIKLGLKQLTPNPWELITKNYTVGQKVT 438

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            +V     FG F+ F    DGL+ +S++        +D +KEG  V VK+L+   + G+I
Sbjct: 439 LKVKSSHPFGVFLEFPEGVDGLLPLSEIPKG-----TD-LKEGMQVEVKILEIAPEEGRI 492

Query: 684 KLSM 687
            LSM
Sbjct: 493 TLSM 496


>gi|167749068|ref|ZP_02421195.1| hypothetical protein EUBSIR_00012 [Eubacterium siraeum DSM 15702]
 gi|167657958|gb|EDS02088.1| hypothetical protein EUBSIR_00012 [Eubacterium siraeum DSM 15702]
          Length = 307

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           ID+ G+  +A  S     A  E  R          I   +V  +  FG FV        +
Sbjct: 94  IDETGSEPLAILSRKA--AQEEADREYVSKLTPGDIIGARVTHLEQFGCFVDIGCGIASM 151

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + I  +S  R+   ++    GD ++  +   D +G I L+ K +
Sbjct: 152 IPIDAISVSRIVHPANRFSVGDDIFAVVKGRD-QGHICLTHKEL 194


>gi|326796399|ref|YP_004314219.1| ribonuclease R [Marinomonas mediterranea MMB-1]
 gi|326547163|gb|ADZ92383.1| ribonuclease R [Marinomonas mediterranea MMB-1]
          Length = 885

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 15/152 (9%)

Query: 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE 618
              Q+  V G        I     A ++   D        +          ++       
Sbjct: 600 KVRQVYKVPGSDKLKANKIYGYDHADMDGLGDSCSTTERRADEATRDVEAWLKCQYVEQH 659

Query: 619 VNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDV-----------VKE 666
           + + + G +  V  FG FV   G   +GL+HIS L  +      +             K 
Sbjct: 660 LGEEFDGIITAVTPFGVFVELGGLFVEGLIHISGLGNDYFIHDPEHQAIIGERTGKSFKL 719

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKP 697
           G  V V +   + D+ KI LS+  V     KP
Sbjct: 720 GTKVKVSVSSVNLDQRKIDLSL--VQNRPEKP 749


>gi|307106749|gb|EFN54994.1| hypothetical protein CHLNCDRAFT_134805 [Chlorella variabilis]
          Length = 323

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTS 661
            A ++        PEV+ +   QV  + + GA+V     G  +G++ +S+LS  R+    
Sbjct: 1   MAHQDCRFYEAKFPEVDDVVMVQVRSIAEMGAYVSLLEYGGIEGMILLSELSRRRIRSVQ 60

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
            ++K G    V +L  D ++G I LS + V   
Sbjct: 61  KLIKVGRQEPVMVLRVDKEKGYIDLSKRRVSPE 93


>gi|302779838|ref|XP_002971694.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
 gi|300160826|gb|EFJ27443.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
          Length = 429

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 631 MDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             FGA            H+S++S + +   S + K G  V VK+L  D +  +I L MK 
Sbjct: 289 KKFGA----GEIVSCFCHVSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKA 344


>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
 gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
          Length = 287

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 97/301 (32%), Gaps = 50/301 (16%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LGTREDEQYVDS 365
           +++ +R DGR  +  R I  + G++ + +GS+    G T+ I  V   LG     Q    
Sbjct: 16  INQNLRSDGRKRDAYRPIFVETGVIPQANGSARVRIGATEVIASVKAELGRPNAFQ---- 71

Query: 366 LSGTQRNDFMMHYNFLPCATGEVSRMGAP---------------SRREIGHGRLARRAIH 410
                +    +  +  P A       G                   +    G  A   + 
Sbjct: 72  ---PDKGKVAIFVDCSPVAEPTFEARGGEELSAELSAALQHCLLGGKS---GAGAGIDLS 125

Query: 411 PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
            ++    +  + L I   +   DG+   A       AL + G+P    VA    G + D 
Sbjct: 126 SLVVAEGKICWDLYIDGLVVSFDGNLLDALGAAIKAALSNTGIP-KVHVAA---GGLGDE 181

Query: 471 DDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLH 530
              + +SD    +     +   V  T  G       +      E+ M  A+  +   + H
Sbjct: 182 QPEVDISDEEFLQFDTSGVPVIVTLTKVG---RHYIVDATSEEESYMSSAVSVSINRKGH 238

Query: 531 ILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590
           I     +  +                 I P  I ++I +   +   ++ +  +++   + 
Sbjct: 239 ICGLTKRGGAG----------------IDPSVISDIISVAQHISEQLINKLDSEIAAAEA 282

Query: 591 G 591
           G
Sbjct: 283 G 283



 Score = 38.7 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV 44
          RP+ +ETG I  Q++G+     G T V+A+V
Sbjct: 31 RPIFVETGVI-PQANGSARVRIGATEVIASV 60


>gi|218662070|ref|ZP_03518000.1| ribonuclease PH [Rhizobium etli IE4771]
          Length = 75

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDE 360
             + + ++R  GR ++ +R +S +    +   GS L   GDT  +   +L  +   
Sbjct: 10  QQLQEIRMRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPA 65


>gi|152977348|ref|YP_001376865.1| ribonuclease R [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152026100|gb|ABS23870.1| ribonuclease R [Bacillus cytotoxicus NVH 391-98]
          Length = 792

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|147770895|emb|CAN74168.1| hypothetical protein VITISV_005208 [Vitis vinifera]
          Length = 305

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 9/202 (4%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LGT 356
           +   ++  +    +R DGR   T R  + + G++ + +GS+    G T  I  V   LG 
Sbjct: 8   EKHFIQGGIAQD-LRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGK 66

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL-ARRAIHPVLPQ 415
               Q  D   G    +     +          + GA    E+    L A   +  ++  
Sbjct: 67  PSPSQ-PDKGKGRGGEELSTELSGALQHCLLGGKSGAVGDMEVLTNVLGAGIDLSSLVVV 125

Query: 416 TAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFII 475
             +  + L I   +  SDG+   A       AL + G+P    VA  A G   DG   + 
Sbjct: 126 EGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIP-KVEVAVGASG---DGLPEVD 181

Query: 476 LSDISGDEDHLGHMDFKVAGTD 497
           +SD    +     +   V  T 
Sbjct: 182 ISDDEYLQFDTSGVPVIVTLTK 203



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 15/140 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD-RSLKDGQDFFPLTVNYQERTYAVGK 72
           RP  +ETG I  Q++G+     G T V+A+V  +       Q   P     +       +
Sbjct: 31  RPFNVETGVI-PQANGSARVRLGGTDVIASVKAELGKPSPSQ---PDKGKGRGGEELSTE 86

Query: 73  IPGGYLR-----RESRPTENEILISRM---IDRSIRPLFSKCYKNETQVIINVMQHDLES 124
           + G         +     + E+L + +   ID S   +       +  +   V+  D  +
Sbjct: 87  LSGALQHCLLGGKSGAVGDMEVLTNVLGAGIDLSSLVVVEGKVCWDLYIDGLVVSSDG-N 145

Query: 125 SPHVVSMVAASAALMLSGLP 144
               +   A  AAL  +G+P
Sbjct: 146 LLDALGA-AIKAALTNTGIP 164


>gi|149183719|ref|ZP_01862129.1| YdcI [Bacillus sp. SG-1]
 gi|148848578|gb|EDL62818.1| YdcI [Bacillus sp. SG-1]
          Length = 717

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA--REMIRSITD 615
           I  D++   +G+G   ++ I+           D  V+       E+ A   ++ +  + D
Sbjct: 594 IQLDELSKELGIGKLTLKDII-----------DALVRPGRDLRDELSAPLLKKDVLKLED 642

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
           +    ++ +G V  V+DFGAFV     +DGLVHIS+L    V    DVV  GD V V + 
Sbjct: 643 LQPGMEL-QGTVRNVVDFGAFVDIGVKQDGLVHISKLRKGFVKHPLDVVSVGDVVTVWVE 701

Query: 676 DFD-DRGKIKLSM 687
             D  +G++ LSM
Sbjct: 702 SADVKKGRVALSM 714


>gi|317130203|ref|YP_004096485.1| ribonuclease R [Bacillus cellulosilyticus DSM 2522]
 gi|315475151|gb|ADU31754.1| ribonuclease R [Bacillus cellulosilyticus DSM 2522]
          Length = 792

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 539 LSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIAS 597
             E+    G           P  +  ++I         I  +T  K +   ++   +IA 
Sbjct: 537 DPENVGHFGLSADFYTHFTSPIRRYPDLIVHRLIRTYLIEGKTDDKTIEKWNEKLYEIAK 596

Query: 598 SSLAEIEAAREMIRSITDVPEVN-------KIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
            S      A +  R   ++ +V        + Y G +  V +FG FV      +GLVH+S
Sbjct: 597 HSSEMERRAEDASRETDELKKVQYMADKIGEEYDGMISGVTNFGIFVELPNTIEGLVHVS 656

Query: 651 QLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
            L+ +              +T +V + GD + V+L++ +   +I
Sbjct: 657 YLTDDYYHYDEKQYAMIGERTGNVFRIGDEIEVRLINVNVDERI 700


>gi|26452638|dbj|BAC43402.1| unknown protein [Arabidopsis thaliana]
          Length = 140

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
           +  +A+  V+        T+ + + + ES GS     +  +SLAL DAG+ +   +  ++
Sbjct: 1   MLHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVS 60

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQ 523
           +  +       ++ D   +E+      F +    S     Q+ +  G  +   +  A+Q 
Sbjct: 61  VSCIGKS----LMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTIT-GEWTTPNINEAMQL 115

Query: 524 AKRGRLHILNEMSKVLSES 542
                  +   M   L +S
Sbjct: 116 CLDASSKLGEIMRDCLKQS 134


>gi|254172346|ref|ZP_04879022.1| DNA-directed RNA polymerase [Thermococcus sp. AM4]
 gi|214034242|gb|EEB75068.1| DNA-directed RNA polymerase [Thermococcus sp. AM4]
          Length = 186

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 18/93 (19%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
              P ++++ +G+V+ V  +GAFV      DGLVHISQL  + V            +T  
Sbjct: 76  VWQPFMHEVVEGEVIDVAPYGAFVRIGPM-DGLVHISQLMDDYVVFDEKNKQFLGKETKR 134

Query: 663 VVKEGDTVWVKLLDFD------DRGKIKLSMKV 689
           ++K GD V  +++            KI L+M+ 
Sbjct: 135 ILKLGDEVRARVIAISVKSRVIRENKIGLTMRQ 167


>gi|260436360|ref|ZP_05790330.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
 gi|260414234|gb|EEX07530.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
          Length = 390

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             R  +       EV ++ +GQV  V  +G F+   G   GL+H S ++   +    +V 
Sbjct: 268 EKRAAVAERFQDLEVGQLVEGQVAAVKPYGLFIDL-GGISGLLHQSAITNGSLRSIREVF 326

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            +GD V   + + D  RG+I L+  +++   G+ ++
Sbjct: 327 DQGDRVSALITELDPGRGRIGLNTALLEGPPGELLI 362


>gi|314993464|ref|ZP_07858829.1| ribonuclease R [Enterococcus faecium TX0133B]
 gi|313592129|gb|EFR70974.1| ribonuclease R [Enterococcus faecium TX0133B]
          Length = 785

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|299116075|emb|CBN74491.1| 30S ribosomal protein S1 [Ectocarpus siliculosus]
          Length = 436

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 3/175 (1%)

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTG 582
           +          +  K    +  +  +   +     +   Q    I    +          
Sbjct: 73  RVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQRNREIAAARREKYTKKFYRD 132

Query: 583 AKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
            K+ +I  +   K    +       R++ R + D+ E  +  KG+V  V  +GA+V    
Sbjct: 133 KKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEG-EWIKGKVRNVESYGAWVDVNA 191

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTG 695
            RDGL+H+  +         +VV   D +  ++   D   GK+ LS+       G
Sbjct: 192 ERDGLLHVKDMGETFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVEDGPREG 246


>gi|257890370|ref|ZP_05670023.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,410]
 gi|260559635|ref|ZP_05831815.1| 3'-5' exoribonuclease [Enterococcus faecium C68]
 gi|293560036|ref|ZP_06676540.1| ribonuclease R [Enterococcus faecium E1162]
 gi|314939620|ref|ZP_07846847.1| ribonuclease R [Enterococcus faecium TX0133a04]
 gi|314941246|ref|ZP_07848142.1| ribonuclease R [Enterococcus faecium TX0133C]
 gi|314949821|ref|ZP_07853131.1| ribonuclease R [Enterococcus faecium TX0082]
 gi|314953387|ref|ZP_07856312.1| ribonuclease R [Enterococcus faecium TX0133A]
 gi|314997313|ref|ZP_07862278.1| ribonuclease R [Enterococcus faecium TX0133a01]
 gi|257826730|gb|EEV53356.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,410]
 gi|260074303|gb|EEW62625.1| 3'-5' exoribonuclease [Enterococcus faecium C68]
 gi|291605903|gb|EFF35333.1| ribonuclease R [Enterococcus faecium E1162]
 gi|313588604|gb|EFR67449.1| ribonuclease R [Enterococcus faecium TX0133a01]
 gi|313594580|gb|EFR73425.1| ribonuclease R [Enterococcus faecium TX0133A]
 gi|313599970|gb|EFR78813.1| ribonuclease R [Enterococcus faecium TX0133C]
 gi|313641160|gb|EFS05740.1| ribonuclease R [Enterococcus faecium TX0133a04]
 gi|313643894|gb|EFS08474.1| ribonuclease R [Enterococcus faecium TX0082]
          Length = 785

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|301056588|ref|YP_003794799.1| ribonuclease R [Bacillus anthracis CI]
 gi|300378757|gb|ADK07661.1| ribonuclease R [Bacillus cereus biovar anthracis str. CI]
          Length = 806

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|242223612|ref|XP_002477408.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723046|gb|EED77394.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1088

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLV 647
           D   V++   S      AR    ++ D+ E  K+  G+V K+ D+G F+   G++  GL 
Sbjct: 665 DKKQVEMTFRSGDLKRDARSQS-TLADLSEGQKV-DGRVKKIEDYGLFIEIAGSKLSGLC 722

Query: 648 HISQLSTERVAKTSDVV---KEGDTVWVKLLDFD-DRGKIKLSMK 688
           H S+LS  + A  +  +   +E D V   +L  D ++ +I   +K
Sbjct: 723 HKSELSDNKDADVTLALRSFRENDQVKAVILSIDREKRRISFGLK 767



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 3/118 (2%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITD---VPEVNKIYK 624
           G     +  I++     ++ D          S    + A+++     D     +V +  +
Sbjct: 550 GRAFPPVDSILKAVVLSIDRDKRQLTLSTRPSRLYPDQAKDVKDHEVDGVSDLKVGQTVR 609

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           G +  V + G FV      D  V I +L  E V            V  ++L  D   K
Sbjct: 610 GFIKNVAEHGIFVMLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVLSVDFDKK 667


>gi|69247783|ref|ZP_00604488.1| 3'-5' exoribonuclease, VacB and RNase II [Enterococcus faecium DO]
 gi|257879706|ref|ZP_05659359.1| 3'-5' exoribonuclease [Enterococcus faecium 1,230,933]
 gi|258616684|ref|ZP_05714454.1| ribonuclease R [Enterococcus faecium DO]
 gi|68194712|gb|EAN09194.1| 3'-5' exoribonuclease, VacB and RNase II [Enterococcus faecium DO]
 gi|257813934|gb|EEV42692.1| 3'-5' exoribonuclease [Enterococcus faecium 1,230,933]
          Length = 785

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|228993834|ref|ZP_04153738.1| Ribonuclease R [Bacillus pseudomycoides DSM 12442]
 gi|228765890|gb|EEM14540.1| Ribonuclease R [Bacillus pseudomycoides DSM 12442]
          Length = 804

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229199858|ref|ZP_04326450.1| Ribonuclease R [Bacillus cereus m1293]
 gi|228583618|gb|EEK41844.1| Ribonuclease R [Bacillus cereus m1293]
          Length = 806

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|217962598|ref|YP_002341170.1| ribonuclease R [Bacillus cereus AH187]
 gi|229141851|ref|ZP_04270378.1| Ribonuclease R [Bacillus cereus BDRD-ST26]
 gi|217066634|gb|ACJ80884.1| ribonuclease R [Bacillus cereus AH187]
 gi|228641607|gb|EEK97911.1| Ribonuclease R [Bacillus cereus BDRD-ST26]
          Length = 806

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|55669565|pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2
          Length = 308

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV  +    V  + + GA+V        +G++H+S+LS  R+   + +++ G    VK+
Sbjct: 11  PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKV 70

Query: 675 LDFD-DRGKIKLSMKVVDQNTG 695
           +  D ++G I LS + V     
Sbjct: 71  IRVDKEKGYIDLSKRRVSPEEA 92


>gi|42561375|ref|NP_975826.1| ribonuclease R [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492873|emb|CAE77468.1| Ribonulease R [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321071|gb|ADK69714.1| putative ribonuclease R [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 704

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 13/106 (12%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           NI +D   K        I+A          + ++N  Y   +  V+ FG F+      +G
Sbjct: 595 NIINDTETKSVECEREVIKACMCEY----MLNKINTTYTATISAVLKFGIFIQLDNLVEG 650

Query: 646 LVHISQLSTERV--------AKTSD-VVKEGDTVWVKLLDFDDRGK 682
           LVHIS ++++ V         K  +   + G  V VKL+  D + +
Sbjct: 651 LVHISNMNSDLVYDETNRILIKPDNTYYRIGQKVKVKLISVDIKKR 696


>gi|294616241|ref|ZP_06696034.1| ribonuclease R [Enterococcus faecium E1636]
 gi|291590755|gb|EFF22471.1| ribonuclease R [Enterococcus faecium E1636]
          Length = 785

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|261208700|ref|ZP_05923137.1| 3'-5' exoribonuclease [Enterococcus faecium TC 6]
 gi|289566043|ref|ZP_06446480.1| ribonuclease R [Enterococcus faecium D344SRF]
 gi|260077202|gb|EEW64922.1| 3'-5' exoribonuclease [Enterococcus faecium TC 6]
 gi|289162150|gb|EFD10013.1| ribonuclease R [Enterococcus faecium D344SRF]
          Length = 785

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|257892978|ref|ZP_05672631.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,408]
 gi|257829357|gb|EEV55964.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,408]
          Length = 785

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|228999860|ref|ZP_04159432.1| Ribonuclease R [Bacillus mycoides Rock3-17]
 gi|229007414|ref|ZP_04165011.1| Ribonuclease R [Bacillus mycoides Rock1-4]
 gi|228753802|gb|EEM03243.1| Ribonuclease R [Bacillus mycoides Rock1-4]
 gi|228759802|gb|EEM08776.1| Ribonuclease R [Bacillus mycoides Rock3-17]
          Length = 804

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|206976639|ref|ZP_03237544.1| ribonuclease R [Bacillus cereus H3081.97]
 gi|206745125|gb|EDZ56527.1| ribonuclease R [Bacillus cereus H3081.97]
          Length = 806

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|49481126|ref|YP_039117.1| ribonuclease R (RNase R) [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49332682|gb|AAT63328.1| ribonuclease R (RNase R) [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 804

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|229087598|ref|ZP_04219728.1| Ribonuclease R [Bacillus cereus Rock3-44]
 gi|228695714|gb|EEL48569.1| Ribonuclease R [Bacillus cereus Rock3-44]
          Length = 810

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|118480167|ref|YP_897318.1| ribonuclease R [Bacillus thuringiensis str. Al Hakam]
 gi|196045743|ref|ZP_03112973.1| ribonuclease R [Bacillus cereus 03BB108]
 gi|118419392|gb|ABK87811.1| RNAse R [Bacillus thuringiensis str. Al Hakam]
 gi|196023574|gb|EDX62251.1| ribonuclease R [Bacillus cereus 03BB108]
          Length = 806

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|257884013|ref|ZP_05663666.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,501]
 gi|257819851|gb|EEV46999.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,501]
          Length = 785

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELRQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|257882699|ref|ZP_05662352.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,502]
 gi|257818357|gb|EEV45685.1| 3'-5' exoribonuclease [Enterococcus faecium 1,231,502]
          Length = 785

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|30265133|ref|NP_847510.1| ribonuclease R [Bacillus anthracis str. Ames]
 gi|47778388|ref|YP_021992.2| ribonuclease R [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187943|ref|YP_031196.1| ribonuclease R [Bacillus anthracis str. Sterne]
 gi|65317078|ref|ZP_00390037.1| COG0557: Exoribonuclease R [Bacillus anthracis str. A2012]
 gi|165870066|ref|ZP_02214723.1| ribonuclease R [Bacillus anthracis str. A0488]
 gi|167636704|ref|ZP_02394990.1| ribonuclease R [Bacillus anthracis str. A0442]
 gi|167641778|ref|ZP_02400020.1| ribonuclease R [Bacillus anthracis str. A0193]
 gi|170689369|ref|ZP_02880562.1| ribonuclease R [Bacillus anthracis str. A0465]
 gi|170709407|ref|ZP_02899817.1| ribonuclease R [Bacillus anthracis str. A0389]
 gi|227817865|ref|YP_002817874.1| ribonuclease R [Bacillus anthracis str. CDC 684]
 gi|229600787|ref|YP_002869326.1| ribonuclease R [Bacillus anthracis str. A0248]
 gi|254686466|ref|ZP_05150325.1| ribonuclease R [Bacillus anthracis str. CNEVA-9066]
 gi|254724465|ref|ZP_05186249.1| ribonuclease R [Bacillus anthracis str. A1055]
 gi|254735673|ref|ZP_05193380.1| ribonuclease R [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744241|ref|ZP_05201921.1| ribonuclease R [Bacillus anthracis str. Kruger B]
 gi|254755538|ref|ZP_05207571.1| ribonuclease R [Bacillus anthracis str. Vollum]
 gi|254756993|ref|ZP_05209021.1| ribonuclease R [Bacillus anthracis str. Australia 94]
 gi|30259810|gb|AAP28996.1| ribonuclease R [Bacillus anthracis str. Ames]
 gi|47552093|gb|AAT34467.2| ribonuclease R [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181870|gb|AAT57246.1| ribonuclease R [Bacillus anthracis str. Sterne]
 gi|164714389|gb|EDR19909.1| ribonuclease R [Bacillus anthracis str. A0488]
 gi|167510261|gb|EDR85665.1| ribonuclease R [Bacillus anthracis str. A0193]
 gi|167527858|gb|EDR90688.1| ribonuclease R [Bacillus anthracis str. A0442]
 gi|170125684|gb|EDS94601.1| ribonuclease R [Bacillus anthracis str. A0389]
 gi|170666665|gb|EDT17435.1| ribonuclease R [Bacillus anthracis str. A0465]
 gi|227007319|gb|ACP17062.1| ribonuclease R [Bacillus anthracis str. CDC 684]
 gi|229265195|gb|ACQ46832.1| ribonuclease R [Bacillus anthracis str. A0248]
          Length = 808

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|294623196|ref|ZP_06702074.1| ribonuclease R [Enterococcus faecium U0317]
 gi|291597391|gb|EFF28564.1| ribonuclease R [Enterococcus faecium U0317]
          Length = 785

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|315427084|dbj|BAJ48700.1| translation initiation factor eIF-2 alpha subunit [Candidatus
           Caldiarchaeum subterraneum]
 gi|315427116|dbj|BAJ48731.1| translation initiation factor eIF-2 alpha subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 254

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           VPEV ++  G+V +V D+GA+V        +G VH+S++S + V    + +KEG     K
Sbjct: 4   VPEVGELVIGRVREVKDYGAYVEIDEYPGYEGFVHVSEVSLKWVRNIREHLKEGQRTVFK 63

Query: 674 LLDFDDRG-KIKLSMKVVDQ 692
           ++  +    +  LS++ V Q
Sbjct: 64  IIRVNPAAMQADLSIRRVSQ 83


>gi|228988352|ref|ZP_04148444.1| Ribonuclease R [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771333|gb|EEM19807.1| Ribonuclease R [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 808

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1]
 gi|29337018|sp|Q9YC05|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2
 gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1]
          Length = 276

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 38/265 (14%)

Query: 302 VVRT---VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +VR     +L K  R   RD +T R++  + G++++  GS+L   G TQ I  V  G   
Sbjct: 14  IVREAYLSLLRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGA 73

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPV------ 412
                       +    +H  F+P A+  V   G P    I   R+  R++  V      
Sbjct: 74  P-----FKDTPNQGVLTVHAEFVPLASP-VFEPGPPDENAIELARVVDRSLREVGAVDLE 127

Query: 413 --LPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDG 470
             + +  +  + L +   I + DG+   A++  +   L+ A +P  +      + + K+G
Sbjct: 128 SLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEG 187

Query: 471 D------------------DFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI 512
           +                  D  I+ D + +E+ +  +    A  ++G         +G +
Sbjct: 188 EGEELKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGMGSL 247

Query: 513 SE---NIMVMALQQAKRGRLHILNE 534
           +E     M+    +A +     L E
Sbjct: 248 TEADIETMIGYSLEASKVYFKALEE 272



 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 46/248 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVY--DRSLKDGQDFFPLTVNYQERTYAVG 71
           R +K+ETG I + ++G+ L   G+T V+A V        KD  +   LTV+ +    A  
Sbjct: 38  RNVKIETGIIEK-AEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASP 96

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVI-----INVMQHD---LE 123
               G       P EN I ++R++DRS+R + +     E+ VI     + V+  D   ++
Sbjct: 97  VFEPGP------PDENAIELARVVDRSLREVGAVDL--ESLVIRPGEKVWVLWVDLYIID 148

Query: 124 SSPHV--VSMVAASAALMLSGLPF--EGPVVGAQV--------------------DYING 159
              ++   SM+A  A L+ + LP   E       +                      I+ 
Sbjct: 149 HDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTVTTAKIDR 208

Query: 160 QYVLNPRLDEDQ-GSLDLFVSGTQDA--VLMVELEANQLSEDVVLDAIIFGHNECKPVIE 216
             V++P ++E+    + L  +  ++   V + +     L+E  +   I +     K   +
Sbjct: 209 YIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGMGSLTEADIETMIGYSLEASKVYFK 268

Query: 217 AISKLAKM 224
           A+ +  K 
Sbjct: 269 ALEEAIKP 276


>gi|225867075|ref|YP_002752453.1| ribonuclease R [Bacillus cereus 03BB102]
 gi|229187338|ref|ZP_04314481.1| Ribonuclease R [Bacillus cereus BGSC 6E1]
 gi|225790827|gb|ACO31044.1| ribonuclease R [Bacillus cereus 03BB102]
 gi|228596042|gb|EEK53719.1| Ribonuclease R [Bacillus cereus BGSC 6E1]
          Length = 812

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|320104703|ref|YP_004180294.1| Tex-like protein [Isosphaera pallida ATCC 43644]
 gi|319751985|gb|ADV63745.1| Tex-like protein [Isosphaera pallida ATCC 43644]
          Length = 1315

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 115/322 (35%), Gaps = 35/322 (10%)

Query: 383  CATGEVSRMGAPS-----RREIGHGRLARRAIHPVLPQTAQFP----YTLRIVSEITESD 433
             +T    R   P      R  I  GR  +  +  ++    Q      Y   + ++     
Sbjct: 793  YSTSPTGREEFPDLDATTRGTISIGRRLQDPLSELVKIEPQHIGVGLYQHDVQAKHLRDS 852

Query: 434  -GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFI----ILSDISGDEDHLGH 488
              S   + V    + L  A +P+ K V+G+     ++  ++        +     +  G 
Sbjct: 853  LDSVVESCVNFVGVDLNTASIPLLKHVSGLNSVRARNIFEYRRTHGPFRNRRQLLEVEGI 912

Query: 489  MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE--MSKVLSESRLQL 546
             +         +     D          +     +A    L +L       +  +   +L
Sbjct: 913  GEATFVQAAGFLKIRDGD---HPFDRTWIHPESYEAATKLLEMLGYTPDVVLDRDKTEEL 969

Query: 547  GEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAA 606
                 ++        +    +G+G   +  I  ++ A+ + D    +             
Sbjct: 970  RHKLNQL-----DLAETAKTLGIGEPTLDDIC-RSLARPDRDPRDELPKPIF-------- 1015

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            ++ +  + D+ E  ++ KG V+ V+DFGAFV       GLVHISQL+   +    DVV  
Sbjct: 1016 KKGVLKLEDLSEGMEL-KGTVLNVVDFGAFVDIGLKDSGLVHISQLANRYIKSPHDVVSV 1074

Query: 667  GDTVWVKLLDFD-DRGKIKLSM 687
            GD V V ++  D DR ++ L+M
Sbjct: 1075 GDVVTVWVMAVDHDRKRVSLTM 1096


>gi|303291157|ref|XP_003064865.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453891|gb|EEH51199.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 2229

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 19/91 (20%)

Query: 617  PEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSD-VVKEGDTVWVK 673
            P+   +  G V +V  +G FV    CG R GL HIS  +  R+    D  V+ G+ V VK
Sbjct: 1626 PDEGAVLMGTVRRVQTYGVFVTLDDCGGRSGLCHISAFADARIDDGLDAHVRAGERVRVK 1685

Query: 674  ---------------LLDFD-DRGKIKLSMK 688
                           +L  + D G+I L MK
Sbjct: 1686 GAFYLTLVPIRPRWRVLKVEVDTGRISLGMK 1716



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G V  V  +G FV   GA  GL     L        ++  + G  V  +++  D+  GK+
Sbjct: 664 GVVTGVEPYGVFVSLYGALRGLAGAQDLGLAPGQTPTEAFQVGQCVRARVIRADNGPGKL 723

Query: 684 KLSM 687
           KLS+
Sbjct: 724 KLSL 727



 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 590  DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFG--AFVHFCGARDGLV 647
            +G V + +  +A  +A   +  +            G V KV+  G   FV   G + G V
Sbjct: 1404 EGGVAMVAGDVARRKAIVTLRAAKKRDVVAGAKLGGIVTKVLSHGGGVFVQLNGRQRGRV 1463

Query: 648  HISQLST-----ERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            H++ LS      E   +       GD V V++L  D D G+I LS +  D
Sbjct: 1464 HVTDLSDAPGSAESQGEPWKKYAPGDAVDVRVLRVDEDDGEIDLSTRASD 1513


>gi|291531593|emb|CBK97178.1| Ribosomal protein S1 [Eubacterium siraeum 70/3]
          Length = 307

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
           ID+ G+  +A  S     A  E  +          I   +V  +  FG FV        +
Sbjct: 94  IDETGSEPLAILSRKA--AQEEADKEYVSKLTPGDIIGARVTHLEQFGCFVDIGCGIASM 151

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           + I  +S  R+   ++    GD ++  +   D +G I L+ K +
Sbjct: 152 IPIDAISVSRIVHPANRFSVGDDIFAVVKGRD-QGHICLTHKEL 194


>gi|260585036|ref|ZP_05852778.1| ribonuclease R [Granulicatella elegans ATCC 700633]
 gi|260157232|gb|EEW92306.1| ribonuclease R [Granulicatella elegans ATCC 700633]
          Length = 775

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 11/138 (7%)

Query: 552 RVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611
           R     I    IR   G G  + +   E   +K+    D + K+   ++        M +
Sbjct: 569 RRYPDLIVHRMIRQYEGSGSFLSKQQEELNASKLERIADQSSKMERLAVQAEREVDAMKK 628

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV------- 664
           +     ++ + ++G V  V  FG FV      +GLVHI+ ++ +        +       
Sbjct: 629 AEFMADKIGQEFEGIVSSVTKFGMFVELPNTVEGLVHITHMNQDYFNFIESHLVLIGERT 688

Query: 665 ----KEGDTVWVKLLDFD 678
               + GD V VKL+  D
Sbjct: 689 GVTYRIGDCVKVKLIKVD 706


>gi|324329032|gb|ADY24292.1| ribonuclease R [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 808

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++   + ++ + Y G +  V +FG FV      +GLVH+S L+
Sbjct: 606 NMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLT 665

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + +++++ +   +
Sbjct: 666 DDYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 705


>gi|150400166|ref|YP_001323933.1| DNA-directed RNA polymerase subunit E' [Methanococcus vannielii SB]
 gi|150012869|gb|ABR55321.1| DNA-directed RNA polymerase [Methanococcus vannielii SB]
          Length = 188

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 22/129 (17%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V+I+      I     A     +     +T VPE++++ +G++V V++FGAF+      D
Sbjct: 49  VDINQVSDGSIIYGDGAAYHETK--FDVLTYVPELHEVVEGEIVDVVEFGAFIRLGP-LD 105

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDF-----DDRG-KIKLSM 687
           GL+HISQ+  + V            +T  V+++GD V  +++         RG KI L+M
Sbjct: 106 GLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDFVRARIVAVSLKEEKKRGSKIALTM 165

Query: 688 KVVDQNTGK 696
           +   Q+ GK
Sbjct: 166 R--QQSLGK 172


>gi|171690730|ref|XP_001910290.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945313|emb|CAP71425.1| unnamed protein product [Podospora anserina S mat+]
          Length = 287

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 35/232 (15%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIR-GDTQA------IVVVTLGTREDE 360
           +      D R    +R    + G+     GS+     G +++      +     G R   
Sbjct: 28  IKNGKGRD-RAPNIIRKTFLKTGVTPSASGSAYLEFEGSSKSGVSGLKLSCTVHGPRS-- 84

Query: 361 QYVDSLSGTQRNDFMMHYNFLPCATGEV-SRMGAPSRREIGHGRLARRAIHPVLPQTAQF 419
               S   +       H  + P AT +    +  PS R++G       A+   +      
Sbjct: 85  -LPRSSPFSPHIVLSAHVKYAPFATKQRRGYLRDPSERDLGT--HLETALRGAIIADRWP 141

Query: 420 PYTLRIVSEITESDG----------------SSSMATVCGSSLALMDAGVPISKPVAGIA 463
              + I+  I E D                 +     +  +S AL DAG+     VAG  
Sbjct: 142 KSGVDIIISIIEGDQDRETSKSQGDETWDMMNVLSGCITVASAALADAGIDCVDTVAGGV 201

Query: 464 MGLVKDGDD----FIILSDISGD-EDHLGHMDFKVAGTDSGITAMQMDMKIG 510
             LV+D  +     I++  I  D E  LG        T   +T +     + 
Sbjct: 202 AALVQDAGEDSTPRIVVDPIPSDHEKVLGACCVAYLPTRDEVTNLWFKGDLP 253


>gi|221482227|gb|EEE20582.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 392

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 26/169 (15%)

Query: 313 RMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED------------ 359
           R DGR+ +  +R ++ ++G  +  HGS+   +G T  I +V +G  E             
Sbjct: 28  RPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALV-VGPVEAPPGPKYSSSGCF 86

Query: 360 -EQYVDSLSGT---QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR-------A 408
               +  L+G                  A    +  G    R         R        
Sbjct: 87  FHVILKPLAGPPMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQT 146

Query: 409 IHPVLPQTAQFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           +   +    ++P   +++   I + DG +  A +  +  AL+DAGV + 
Sbjct: 147 LLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLR 195



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 30/157 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER------- 66
           RPL ++ G  AR + G+   + G T V+A VV       G  +      +          
Sbjct: 39  RPLTVKLG-FARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCFFHVILKPLAGP 97

Query: 67  --------TYAVGKI----PGGYLR--RESRPTENEILISRMIDRSIRPLFS------KC 106
                     A+G        G  R  R  R         R ++  ++ L        + 
Sbjct: 98  PMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQTLLQHMVLPGEY 157

Query: 107 YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
            +   Q+ + ++Q D         + AA AAL+ +G+
Sbjct: 158 PRCLVQLTLMILQDDGG--AESACINAALAALIDAGV 192


>gi|196015125|ref|XP_002117420.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
 gi|190579949|gb|EDV20036.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
          Length = 927

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 15/149 (10%)

Query: 544 LQLGEFTPRVEIMAI---PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSL 600
             +    PR+ +  I    P++        G  I+        +V   D    ++  +  
Sbjct: 469 DHIKALCPRLHMSDITLKHPEKKFK----EGNKIK-------CRVLTVDARRRRLILTHK 517

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
             +  +  ++ +  +  + N    G +  V   G F+ F     G VH   LST+ +   
Sbjct: 518 KSMVHSSHVVITSYEEAQENVTAHGFISSVRSNGCFITFYNNVRGFVHKKYLSTQYIENP 577

Query: 661 SDVVKEGDTVWVKLLDFDD-RGKIKLSMK 688
             V   G  V   ++  D    K+ LS+K
Sbjct: 578 ETVFFVGQVVLTYIVSVDAVNKKLSLSLK 606



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   +  G+++ + DFG  V        L     +S   +       KEG+ +  ++L  
Sbjct: 446 KPGTLVMGKIISLEDFGILVQVTDHIKALCPRLHMSDITLKHPEKKFKEGNKIKCRVLTV 505

Query: 678 D-DRGKIKLSMK 688
           D  R ++ L+ K
Sbjct: 506 DARRRRLILTHK 517


>gi|167765732|ref|ZP_02437785.1| hypothetical protein CLOSS21_00221 [Clostridium sp. SS2/1]
 gi|167712584|gb|EDS23163.1| hypothetical protein CLOSS21_00221 [Clostridium sp. SS2/1]
          Length = 713

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++   +G+G   ++ IV++      +  +D    I  + + E++  +  ++        
Sbjct: 594 KKLSEELGIGEITLKDIVKELEKPGRDPREDLPKPILRTDVLEMKDLKPGMK-------- 645

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
               KG V  V+DFGAFV     +DGLVHISQ++   +    +VV  GD V V ++  D 
Sbjct: 646 ---LKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFIKHPLEVVSVGDVVDVVVVSVDI 702

Query: 679 DRGKIKLSMK 688
           D+ +I+LSMK
Sbjct: 703 DKKRIQLSMK 712


>gi|39971537|ref|XP_367159.1| hypothetical protein MGG_07084 [Magnaporthe oryzae 70-15]
 gi|145019548|gb|EDK03776.1| hypothetical protein MGG_07084 [Magnaporthe oryzae 70-15]
          Length = 302

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 55/196 (28%), Gaps = 36/196 (18%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFI---------RGDTQA----IVVVTLGTR 357
             R   R    +R I  + G+     GS+             G+T      +     G R
Sbjct: 29  GPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGKEGETSTSGLKLSCTVHGPR 88

Query: 358 EDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTA 417
                  S   +       H  + P AT +       S  E         A+  V+    
Sbjct: 89  A---LPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDS-TERDLSVHLETALRGVIIADR 144

Query: 418 QFPYTLRIVSEITESDG-------------------SSSMATVCGSSLALMDAGVPISKP 458
                + ++  + E D                    S     +  +S AL DAG+     
Sbjct: 145 WPKSGVDVIVSVIEGDQDRRLPLQDSGSGEEAWSTMSVLSGCITVASAALADAGIDCVDM 204

Query: 459 VAGIAMGLVKDGDDFI 474
           VAG    LV+D  D  
Sbjct: 205 VAGGVAALVRDDSDGA 220


>gi|319647804|ref|ZP_08002022.1| rnr protein [Bacillus sp. BT1B_CT2]
 gi|317390145|gb|EFV70954.1| rnr protein [Bacillus sp. BT1B_CT2]
          Length = 576

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 57/134 (42%), Gaps = 11/134 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++     + GK      E+   K+    + T  +  +++       ++ ++   + ++
Sbjct: 377 VHRLIRTYLIQGKTDEATREKWAEKLPEIAEHTSNMERNAVDAERETDDLKKTEFMLDKI 436

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V +FG FV      +GLVH+S ++ +              +T +V + GD
Sbjct: 437 GEEFDGVISSVTNFGMFVELPNTIEGLVHVSFMTDDFYRYDEQHYAMIGERTGNVYRIGD 496

Query: 669 TVWVKLLDFDDRGK 682
            + V+++D +   +
Sbjct: 497 EITVRVVDVNKDER 510


>gi|291558933|emb|CBL37733.1| Transcriptional accessory protein [butyrate-producing bacterium
           SSC/2]
          Length = 713

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 13/130 (10%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++   +G+G   ++ IV++      +  +D    I  + + E++  +  ++        
Sbjct: 594 KKLSEELGIGEITLKDIVKELEKPGRDPREDLPKPILRTDVLEMKDLKPGMK-------- 645

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD- 678
               KG V  V+DFGAFV     +DGLVHISQ++   +    +VV  GD V V ++  D 
Sbjct: 646 ---LKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFIKHPLEVVSVGDVVDVVVVSVDI 702

Query: 679 DRGKIKLSMK 688
           D+ +I+LSMK
Sbjct: 703 DKKRIQLSMK 712


>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
 gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
 gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
          Length = 284

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 28/216 (12%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   +R  +    +R DGR     R IS + G++ + +GS+    G T+ I  V     +
Sbjct: 8   EKHFIRGGIAQD-LRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV-----K 61

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAP---------------SRREIGHGR 403
            E    S+    +    +  +  P A       G+                  +    G 
Sbjct: 62  AELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKS---GA 118

Query: 404 LARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIA 463
            A   +  ++    +  + L I   +  SDG+   A      +AL D G+P       ++
Sbjct: 119 GAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVN----VS 174

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           +    D +  + +SD    +     +   V  T  G
Sbjct: 175 LSATTDEEPEVNVSDEEFLQFDTSSVPVIVTLTKVG 210



 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV 44
          R + +ETG I  Q++G+     G T V+ATV
Sbjct: 31 RAISVETGVI-PQANGSARVRLGATEVIATV 60


>gi|70607040|ref|YP_255910.1| translation initiation factor IF-2 subunit alpha [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567688|gb|AAY80617.1| translation initiation factor eIF2 alpha [Sulfolobus acidocaldarius
           DSM 639]
          Length = 263

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG--ARDGLVHISQLSTERVAKTSDVVKE 666
           MI +    P   ++    V ++ D+G++V+          +  S++S+  V    DV+KE
Sbjct: 1   MIYNRNKFPSDGEVLVATVKQIFDYGSYVYLDEYSNLQAFLPWSEISSRWVKNIRDVLKE 60

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              + VK++  D  +G + +S+K V ++ 
Sbjct: 61  DRKIVVKVIRIDRKKGTVDVSLKKVTEDE 89


>gi|268610021|ref|ZP_06143748.1| 30S ribosomal protein S1 [Ruminococcus flavefaciens FD-1]
          Length = 307

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           +  IV      +    DG++    S  A  +       S         I   +V  +  F
Sbjct: 82  VNKIVRCRVTSIIRQKDGSIMPVLSRKASQDECMANYISS---LGSGDIIPARVTHIEHF 138

Query: 634 GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVV 690
           GAF         L+ I  +S  R++  SD    G  +   +    +R ++ L+ K +
Sbjct: 139 GAFTDIGCGIPSLIPIDSISVSRISDPSDRFTVGQMIKAAV-KRCERDRVFLTHKEL 194


>gi|237842251|ref|XP_002370423.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
           gondii ME49]
 gi|211968087|gb|EEB03283.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
           gondii ME49]
 gi|221502879|gb|EEE28593.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 392

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 26/169 (15%)

Query: 313 RMDGRD-SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED------------ 359
           R DGR+ +  +R ++ ++G  +  HGS+   +G T  I +V +G  E             
Sbjct: 28  RPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALV-VGPVEAPPGPKYSSSGCF 86

Query: 360 -EQYVDSLSGT---QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR-------A 408
               +  L+G                  A    +  G    R         R        
Sbjct: 87  FHVILKPLAGPPMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQT 146

Query: 409 IHPVLPQTAQFPYT-LRIVSEITESDGSSSMATVCGSSLALMDAGVPIS 456
           +   +    ++P   +++   I + DG +  A +  +  AL+DAGV + 
Sbjct: 147 LLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLR 195



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 30/157 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQER------- 66
           RPL ++ G  AR + G+   + G T V+A VV       G  +      +          
Sbjct: 39  RPLTVKLG-FARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSGCFFHVILKPLAGP 97

Query: 67  --------TYAVGKI----PGGYLR--RESRPTENEILISRMIDRSIRPLFS------KC 106
                     A+G        G  R  R  R         R ++  ++ L        + 
Sbjct: 98  PMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQTLLQHMVLPGEY 157

Query: 107 YKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGL 143
            +   Q+ + ++Q D         + AA AAL+ +G+
Sbjct: 158 PRCLVQLTLMILQDDGG--AESACINAALAALIDAGV 192


>gi|167525701|ref|XP_001747185.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774480|gb|EDQ88109.1| predicted protein [Monosiga brevicollis MX1]
          Length = 639

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV+ +    V  + + GA+V        DG++ +S+LS  R+   + +++ G    V +
Sbjct: 339 PEVDDVVMVNVKSIQEMGAYVQLLEYDGIDGMILLSELSRRRIRSLNKLIRVGRHECVVV 398

Query: 675 LDFD-DRGKIKLSMKVVDQNTGK 696
           +  D ++G I LS + V     K
Sbjct: 399 MRVDEEKGYIDLSKRRVSPEEAK 421


>gi|294155816|ref|YP_003560200.1| RNA (S1 domain)-binding protein [Mycoplasma crocodyli MP145]
 gi|291600180|gb|ADE19676.1| RNA (S1 domain)-binding protein [Mycoplasma crocodyli MP145]
          Length = 700

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 575 RGIVEQTGAKVN---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVM 631
           + + E    K +   I D            +      +  +  D   V++IY G++  + 
Sbjct: 588 KILQESKTDKYSLELILDSLNNPTKDIRDNKKGFKINLDLNDIDDIVVDEIYDGRIENIT 647

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIK 684
           DFGAFV      +  +H S+   + +A        G  + VK++  + DR +I 
Sbjct: 648 DFGAFVFIGIKTNVFIHFSKYKNKPIA-------LGSDIKVKVISIEKDRKRIS 694


>gi|52081942|ref|YP_080733.1| ribonuclease R [Bacillus licheniformis ATCC 14580]
 gi|52787326|ref|YP_093155.1| ribonuclease R [Bacillus licheniformis ATCC 14580]
 gi|52005153|gb|AAU25095.1| ribonuclease R [Bacillus licheniformis ATCC 14580]
 gi|52349828|gb|AAU42462.1| Rnr [Bacillus licheniformis ATCC 14580]
          Length = 767

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 57/134 (42%), Gaps = 11/134 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++     + GK      E+   K+    + T  +  +++       ++ ++   + ++
Sbjct: 568 VHRLIRTYLIQGKTDEATREKWAEKLPEIAEHTSNMERNAVDAERETDDLKKTEFMLDKI 627

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGD 668
            + + G +  V +FG FV      +GLVH+S ++ +              +T +V + GD
Sbjct: 628 GEEFDGVISSVTNFGMFVELPNTIEGLVHVSFMTDDFYRYDEQHYAMIGERTGNVYRIGD 687

Query: 669 TVWVKLLDFDDRGK 682
            + V+++D +   +
Sbjct: 688 EITVRVVDVNKDER 701


>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 271

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 14/171 (8%)

Query: 296 EDIQA--KVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT 353
             I+   +  R        R++ R +  +RD+  ++G    +  S  +  G+T+ + +  
Sbjct: 15  SKIEKIDEEFRR--SGTFRRINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILAL-I 71

Query: 354 LGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVL 413
            G + D         ++   +     FL   +  ++  GA    +     L    +  V+
Sbjct: 72  YGPKPD---------SKNATYDKGKVFLEIRSLNMNDDGANDESDENIKNLLIECVSSVI 122

Query: 414 PQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
                   ++ I   I ++DG    AT+   SLAL +A + +   +  + +
Sbjct: 123 LLDQYPQCSINIKCLIIQNDGGCLSATLTCISLALTNAQIKMRDIIVSVNV 173


>gi|314936917|ref|ZP_07844264.1| ribonuclease R [Staphylococcus hominis subsp. hominis C80]
 gi|313655536|gb|EFS19281.1| ribonuclease R [Staphylococcus hominis subsp. hominis C80]
          Length = 792

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 602 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 661

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S ++ +              + + V + GD V VK+   D   ++
Sbjct: 662 SNMTDDYYQFDERQMALIGERHAKVFRIGDEVTVKVTHVDVDERM 706


>gi|227552053|ref|ZP_03982102.1| exoribonuclease R [Enterococcus faecium TX1330]
 gi|257886785|ref|ZP_05666438.1| 3'-5' exoribonuclease [Enterococcus faecium 1,141,733]
 gi|257895353|ref|ZP_05675006.1| 3'-5' exoribonuclease [Enterococcus faecium Com12]
 gi|227178806|gb|EEI59778.1| exoribonuclease R [Enterococcus faecium TX1330]
 gi|257822839|gb|EEV49771.1| 3'-5' exoribonuclease [Enterococcus faecium 1,141,733]
 gi|257831918|gb|EEV58339.1| 3'-5' exoribonuclease [Enterococcus faecium Com12]
          Length = 785

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDAMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFIENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|293378224|ref|ZP_06624393.1| ribonuclease R [Enterococcus faecium PC4.1]
 gi|292643088|gb|EFF61229.1| ribonuclease R [Enterococcus faecium PC4.1]
          Length = 785

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDAMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFIENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|293572433|ref|ZP_06683413.1| ribonuclease R [Enterococcus faecium E980]
 gi|291607495|gb|EFF36837.1| ribonuclease R [Enterococcus faecium E980]
          Length = 785

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDAMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFIENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|257897965|ref|ZP_05677618.1| 3'-5' exoribonuclease [Enterococcus faecium Com15]
 gi|257835877|gb|EEV60951.1| 3'-5' exoribonuclease [Enterococcus faecium Com15]
          Length = 785

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDAMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFIENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|293556424|ref|ZP_06675005.1| ribonuclease R [Enterococcus faecium E1039]
 gi|291601491|gb|EFF31762.1| ribonuclease R [Enterococcus faecium E1039]
          Length = 785

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDAMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFIENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|319650506|ref|ZP_08004646.1| ribonuclease R [Bacillus sp. 2_A_57_CT2]
 gi|317397687|gb|EFV78385.1| ribonuclease R [Bacillus sp. 2_A_57_CT2]
          Length = 774

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       E+ ++     ++ + Y G +  V +FG FV      +GL+H+S ++
Sbjct: 604 NMERRAVEAERETDELKKAEYMADKIGEEYDGIISSVTNFGMFVELPNTIEGLIHVSYMT 663

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
            +              +T +V + GD + V++++ +   +
Sbjct: 664 DDYYRYDERQMAMIGERTGNVFRIGDEITVRVVNVNKDER 703


>gi|228474323|ref|ZP_04059058.1| ribonuclease R [Staphylococcus hominis SK119]
 gi|228271682|gb|EEK13029.1| ribonuclease R [Staphylococcus hominis SK119]
          Length = 792

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 602 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 661

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S ++ +              + + V + GD V VK+   D   ++
Sbjct: 662 SNMTDDYYQFDERQMALIGERHAKVFRIGDKVTVKVTHVDVDERM 706


>gi|308477282|ref|XP_003100855.1| hypothetical protein CRE_16179 [Caenorhabditis remanei]
 gi|308264429|gb|EFP08382.1| hypothetical protein CRE_16179 [Caenorhabditis remanei]
          Length = 185

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 43/194 (22%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMM 376
           R   T R +  + G+     GS     G+T+ +           Q  +            
Sbjct: 31  RSETTFRPLCVKCGVFGAQDGSGYAEFGNTRVL----------AQMYE------------ 68

Query: 377 HYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS 436
                               +E         ++  V+         + I   +   DG  
Sbjct: 69  --------------------KEHLTSVNNLSSLSAVIFVNKYPGKVIDIEVTVLSDDGGV 108

Query: 437 SMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
               +   +LAL  +G+      A   + L  +GD +I     S  ED +G + F     
Sbjct: 109 LSTAITAVTLALAHSGIEHMGLTASAHVALKSNGD-YITDPSTSEAEDAIGGVTFAFVPN 167

Query: 497 DSGITAMQMDMKIG 510
               T + +  +I 
Sbjct: 168 LGQTTCVNLYGRIP 181



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 46/172 (26%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT-VNY 63
              E  +  RPL ++ G    Q DG+  A +G T VLA +     L    +   L+ V +
Sbjct: 30  KRSETTF--RPLCVKCGVFGAQ-DGSGYAEFGNTRVLAQMYEKEHLTSVNNLSSLSAVIF 86

Query: 64  QERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLE 123
                 V K PG                 ++ID                + + V+  D  
Sbjct: 87  ------VNKYPG-----------------KVID----------------IEVTVLSDDGG 107

Query: 124 SSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGSL 174
                 ++ A + AL  SG+   G    A V    NG Y+ +P   E + ++
Sbjct: 108 VLS--TAITAVTLALAHSGIEHMGLTASAHVALKSNGDYITDPSTSEAEDAI 157


>gi|294617573|ref|ZP_06697203.1| ribonuclease R [Enterococcus faecium E1679]
 gi|291596179|gb|EFF27442.1| ribonuclease R [Enterococcus faecium E1679]
          Length = 785

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           D + K+   ++        M ++   + +V + + G +  V+ FG F+      +GL+HI
Sbjct: 608 DHSSKMERRAVETEREVDAMKKAEFMMDKVGEEFDGIISSVVKFGLFIELPNTVEGLIHI 667

Query: 650 SQLSTERVAKTSDVV-----------KEGDTVWVKLLDFDDRGK 682
           ++L  +      + +           K G  V VK++  D   +
Sbjct: 668 NELKQDYFHFIENHLALVGERTGLTFKIGQKVRVKVVKADPDER 711


>gi|118577117|ref|YP_876860.1| translation initiation factor 2, alpha subunit [Cenarchaeum
           symbiosum A]
 gi|118195638|gb|ABK78556.1| translation initiation factor 2, alpha subunit [Cenarchaeum
           symbiosum A]
          Length = 259

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           +PE  ++    V +VMD GA+V     G   G +HIS+++   +   S  VK G+   V 
Sbjct: 4   LPEPGEVVLATVTRVMDHGAYVSLDEFGDIPGFLHISEIAPGWIRSISRFVKTGEK-KVL 62

Query: 674 LLDFDDRGK--IKLSMKVV 690
           L+   +  +  I LS+K V
Sbjct: 63  LVKRVNEKRADIDLSLKQV 81


>gi|75763003|ref|ZP_00742796.1| Exoribonuclease II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74489504|gb|EAO52927.1| Exoribonuclease II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 206

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++       EM ++   V ++ + Y G +  V +FG FV      +GLVH+S L+ 
Sbjct: 1   MERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVHVSYLTD 60

Query: 655 ERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
           +              +T +V + GD + +++++ +   +
Sbjct: 61  DYYRYDEQHFAMIGERTGNVFRIGDEITIRVINVNKDER 99


>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
 gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
          Length = 259

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 102/266 (38%), Gaps = 32/266 (12%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +  +++   V + + D + R+DGR  + +R I  + GL+++  GS+    G+TQ +  
Sbjct: 3   DEILMEVRKDYVLSKLRDGE-RIDGRAFDEIRPIEIKTGLIKKAEGSAYVKLGNTQVVAG 61

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--- 408
           V    +  E + D+     +   + +   +P A+      G P    I   R+  R    
Sbjct: 62  V--KMQIGEPFPDT---PDQGIIITNAELVPLASPTFEP-GPPDENAIELARVVDRGIRH 115

Query: 409 -----IHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG-- 461
                +  +  +  +  + + I     + DG+   A+   +  AL++  VP  +   G  
Sbjct: 116 SEAVDLKKLCIEEGEKVWIIFIDIWALDDDGNLMDASALAAIAALLNTTVPAERFEVGDD 175

Query: 462 ---------IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS----GITAMQMDMK 508
                    +A+  +   D   IL D   DE  +G     +    +     I      + 
Sbjct: 176 FPLPVRDLPVAITSLVYDDK--ILVDPCRDELSVGKNTITITTDQNDNIVSIQKSGPFLL 233

Query: 509 IGGISENIMVMALQQAKRGRLHILNE 534
                E ++ +++++A+  R  + + 
Sbjct: 234 SEKAFEEVLEVSIRKAREVRKLLADV 259



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYD--RSLKDGQDFFPLTVNYQERTYAVG 71
           RP++++TG I ++++G+     G T V+A V         D  D   +  N +    A  
Sbjct: 33  RPIEIKTGLI-KKAEGSAYVKLGNTQVVAGVKMQIGEPFPDTPDQGIIITNAELVPLASP 91

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIR 100
               G       P EN I ++R++DR IR
Sbjct: 92  TFEPGP------PDENAIELARVVDRGIR 114


>gi|83754322|pdb|2BA0|A Chain A, Archaeal Exosome Core
 gi|83754323|pdb|2BA0|B Chain B, Archaeal Exosome Core
 gi|83754324|pdb|2BA0|C Chain C, Archaeal Exosome Core
          Length = 229

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ-LSTERVAKTSDVVKEGDTVWVK 673
             P V  +  G + +V   G  V         + +S+    +   K ++V+  GD +  K
Sbjct: 53  YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAK 112

Query: 674 LLDFDDRGKIKLSMKV 689
           +L+ D + K+ L+MK 
Sbjct: 113 VLNIDPKMKVTLTMKD 128


>gi|68071769|ref|XP_677798.1| Pb-reticulocyte binding protein [Plasmodium berghei strain ANKA]
 gi|56498049|emb|CAH95902.1| Pb-reticulocyte binding protein [Plasmodium berghei]
          Length = 581

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 83/248 (33%), Gaps = 21/248 (8%)

Query: 458 PVAGIAMGLVKDGDDFIILSDISGD---EDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
            V  +  G +   +  + + DI+     E H   M + +           +      +  
Sbjct: 92  YVGKLIFGKIFRIEKNMAIVDINYSHYGEIHSDQMPYNITNISD------VFKVNDKLIF 145

Query: 515 NIMVMA---LQQAKRGRLHILNEMSKV---LSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
            I  M    ++   +    I +    +     +   ++   +     + +  + I   I 
Sbjct: 146 EIYKMYPNRIELTLKNIQKINDLNKILLYKTQDIPFEVTVLSIIKNGITVSYNDIYTFIH 205

Query: 569 MGGKVIRG-IVEQTGAKVN---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           +     +  ++      ++   ++    V     +                   +  +  
Sbjct: 206 ISAISSKYKVIVDENETIDSNLLNKKIKVFCTDINKLSFSNLLYEQNEQLKNINMYDVID 265

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            +++ +  +G  V +     GL+HIS++S +++   ++V K  + +   L++ D    + 
Sbjct: 266 VEIIHISKYGIMVKY-NDIVGLIHISEISRKKIENINNVFKINEKIKGMLINIDYYNKRF 324

Query: 684 KLSMKVVD 691
            LS K+++
Sbjct: 325 SLSTKILE 332


>gi|11498103|ref|NP_069328.1| exosome complex RNA-binding protein Rrp4 [Archaeoglobus fulgidus
           DSM 4304]
 gi|29336577|sp|O29758|ECR1_ARCFU RecName: Full=Probable exosome complex RNA-binding protein 1
 gi|2650134|gb|AAB90745.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 223

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ-LSTERVAKTSDVVKEGDTVWVK 673
             P V  +  G + +V   G  V         + +S+    +   K ++V+  GD +  K
Sbjct: 53  YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAK 112

Query: 674 LLDFDDRGKIKLSMKV 689
           +L+ D + K+ L+MK 
Sbjct: 113 VLNIDPKMKVTLTMKD 128


>gi|170067610|ref|XP_001868550.1| mRNA transport regulator 3 [Culex quinquefasciatus]
 gi|167863714|gb|EDS27097.1| mRNA transport regulator 3 [Culex quinquefasciatus]
          Length = 173

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 8/146 (5%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
              F+D    V+     ++K     R     R    ++G++    GS+    G+T+ IV 
Sbjct: 25  DKAFQDRLEDVLDPTTGNRKC---NRQDTESRKYFMKLGVVSTAKGSAYLELGNTKVIVS 81

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHP 411
           V    RE        +  +  +      F P A             E        +A+ P
Sbjct: 82  V-FDPRE---IPKQNTFRELGELYCDLKFSPFACVHRKN-PQTDAEERSLAAAMTKALQP 136

Query: 412 VLPQTAQFPYTLRIVSEITESDGSSS 437
           V+ +     + + I + + E DGS  
Sbjct: 137 VVCRHLFPNFQIDIFANVLEDDGSCL 162


>gi|319653980|ref|ZP_08008073.1| hypothetical protein HMPREF1013_04692 [Bacillus sp. 2_A_57_CT2]
 gi|317394302|gb|EFV75047.1| hypothetical protein HMPREF1013_04692 [Bacillus sp. 2_A_57_CT2]
          Length = 285

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 514 ENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKV 573
             I+  +  +       + +     +  +R +L     + E +    +   + I      
Sbjct: 3   LEILKESRDRKWVQYGVVESIRKVDVKGNREELVVIGYQGERVYARKE---DFIERSISS 59

Query: 574 IRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDF 633
           + G V  T   +  D    V   S   A  + A++ + S     ++    KG V  V D 
Sbjct: 60  LNGFVSTTVPFIVKDIKDGVVSVSRIEALGKVAKQFVDS----VKIGDRVKGTVTGVNDN 115

Query: 634 G-AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG--------KIK 684
           G  +V   G    L+   +   +R     +++  G  V   ++  D+          +I+
Sbjct: 116 GLVYVEVQGY-PCLIPPEEWDFKRTQNLRELLSLGTVVEANVITIDNLEGSEEKIDYRIR 174

Query: 685 LSMKVVDQNT 694
           LS K V Q  
Sbjct: 175 LSRKSVIQEE 184


>gi|328774146|gb|EGF84183.1| hypothetical protein BATDEDRAFT_34144 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 529

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 660 TSDVVKEGDTVWVKLLDFDDR-GKIKLSMKVVDQNTGK 696
             +V++ G  V VK+L+ +++  +I LS+K ++Q+  +
Sbjct: 462 PQEVLEVGQQVSVKVLEVNEKDERISLSIKEIEQDQAE 499


>gi|320165905|gb|EFW42804.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2281

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
           G ++++        AA   +           +  G V  +  +G FV F     GL H++
Sbjct: 856 GRIELSLKPSLLEAAASTKVLPAVSTLATGAVLPGFVKSIQPYGVFVGFLNGLTGLTHLT 915

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSM 687
           +L+   V   ++    G +V   +++ D +  K+ LS+
Sbjct: 916 RLAGHFVTAPAEEFAVGQSVKAAVVEVDREDSKLTLSL 953



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 607  REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
            R+ +    +   V +I +G V    + G FV+      G V IS LS   + K       
Sbjct: 1624 RDPVIRSVEDVRVGQILRGFVRHTDEKGCFVNLGVNVVGRVLISNLSDRFLLKWRTAYST 1683

Query: 667  GDTVWVKLLDFD-DRGKIKLSMK 688
            G  V  K+L  D  + +I+LS +
Sbjct: 1684 GQLVTAKVLAVDLAKKQIELSFR 1706



 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 616  VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTER-VAKTSDVVKEGDTVWVK 673
              E  + Y  +V  V  +G FV        GLVH S+++  +       + + GD+V V 
Sbjct: 1723 EIEEGQKYNAKVTGVERYGVFVKIENSDIAGLVHASEIADHQAPENFGSLFEVGDSVRVL 1782

Query: 674  LLDF----DDRGKIKLSMK 688
            +         + KI  SMK
Sbjct: 1783 IKQIVREKGKKAKINFSMK 1801



 Score = 46.8 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   +  G V+ V+  G  V       G +  S +S  ++ K    +  G +V  ++L+ 
Sbjct: 604 KPGSLVTGTVLDVVPAGVTVQLTDTIRGFIPGSHMSDVQLTKAPKHMSAGASVECRVLEV 663

Query: 678 D-DRGKIKLSMKVVDQNTGKPIV 699
           D +R ++ L+ K     T  PIV
Sbjct: 664 DTERRRVFLTHKKSLVKTSLPIV 686


>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
 gi|187040399|emb|CAP20857.1| CBR-ARX-4 protein [Caenorhabditis briggsae AF16]
          Length = 539

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 39/239 (16%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRED-------EQYVDSLSGT 369
           R S   R +S + G+     GS     G+T+ +    LG   D        + V +L G 
Sbjct: 31  RSSTAFRPLSVKCGVFGAQDGSGYAEFGNTRVLAQ-ILGPDGDGKWEEDHAKVVVTLKGV 89

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
           +             +  E                    +   V+         + I   +
Sbjct: 90  ENET----------SVAEWR-------------AELTSSASAVIFVNKYPGKVIEIEITV 126

Query: 430 TESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH--LG 487
              DG      +   +LAL  +G+      A + + +  +GD    ++D S  E    LG
Sbjct: 127 LSDDGGVLSTAITAMALALAHSGIEHMGLTASVHVAMRPNGD---YITDPSTSESSGILG 183

Query: 488 HMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQL 546
            + F         T + +    G I        L+ A++  + I+  + K +  SR ++
Sbjct: 184 GVTFAFVPNLDQTTCVDL---YGRIPLKAARPLLEFARQRAITIVPAIHKAIVNSRSKM 239



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 23/165 (13%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDR---SLKDGQDFFPLTVNYQERTYAV 70
           RPL ++ G    Q DG+  A +G T VLA ++        ++      +T+   E   +V
Sbjct: 37  RPLSVKCGVFGAQ-DGSGYAEFGNTRVLAQILGPDGDGKWEEDHAKVVVTLKGVENETSV 95

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVS 130
            +      R E   + + ++             +K      ++ I V+  D        +
Sbjct: 96  AE-----WRAELTSSASAVI-----------FVNKYPGKVIEIEITVLSDDGGVLS--TA 137

Query: 131 MVAASAALMLSGLPFEGPVVGAQVD-YINGQYVLNPRLDEDQGSL 174
           + A + AL  SG+   G      V    NG Y+ +P   E  G L
Sbjct: 138 ITAMALALAHSGIEHMGLTASVHVAMRPNGDYITDPSTSESSGIL 182


>gi|296413553|ref|XP_002836475.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630299|emb|CAZ80666.1| unnamed protein product [Tuber melanosporum]
          Length = 336

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 51/194 (26%), Gaps = 28/194 (14%)

Query: 306 VMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI-------RGDTQAIVVVTLGTRE 358
           +       +  R   T+R I  + GL     GS+             T  +     G R 
Sbjct: 20  LTSSTHKSIIKRSPTTLRKIFLKTGLTPPATGSAFLELPTPSTHSTPTLKLTSSVYGPR- 78

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQ 418
                 S + +          F P +T    R       E         A+   +     
Sbjct: 79  --PLPSSTTFSSNARLTAELKFSPFSTPGRRRGYIRDGVERDLSAQLSIALGKSVAVGKY 136

Query: 419 FPYTLRIVSEITESDGSSSMATVCGSS---LALM---------------DAGVPISKPVA 460
               + +   + + +G    A         + LM               DAG+     VA
Sbjct: 137 PKSAIDVFVSVLDCEGGLGDAGDEAGGGVDVGLMSVLATAISCASAAIADAGIECFDLVA 196

Query: 461 GIAMGLVKDGDDFI 474
           G   GLV +    +
Sbjct: 197 GGVAGLVLEQGGVV 210


>gi|314933092|ref|ZP_07840458.1| ribonuclease R [Staphylococcus caprae C87]
 gi|313654411|gb|EFS18167.1| ribonuclease R [Staphylococcus caprae C87]
          Length = 791

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           + +S +              + + V + GD V VK+   D   ++
Sbjct: 661 TNMSDDYYNFDERQMALIGERQAKVFRIGDEVKVKVTHVDVDERM 705


>gi|256848062|ref|ZP_05553506.1| ribonuclease R [Lactobacillus coleohominis 101-4-CHN]
 gi|256715122|gb|EEU30099.1| ribonuclease R [Lactobacillus coleohominis 101-4-CHN]
          Length = 799

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD------ 662
           M ++      V + ++  V  VM FG FV      +GL+HIS ++ +             
Sbjct: 637 MKKAEYMEDHVGETFEAVVSSVMKFGLFVELPNTVEGLIHISAMNDDYYEYVEKQMALVG 696

Query: 663 -----VVKEGDTVWVKLLDFDDRGK 682
                + + G  V VKLL  D   +
Sbjct: 697 RSNHHIFRIGQPVKVKLLRVDKDQR 721


>gi|221488740|gb|EEE26954.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
          Length = 352

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG-RLARRAIHPVLPQTAQFPYT-LRIVS 427
           +R   +      P +    + +         H   L  R +   +      P + + +  
Sbjct: 157 ERASLLCRVGIAPFSGDWRADVTRSGGAAEEHEVALGVRKVVESVILADTCPRSLICLFV 216

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            + E+DG    A++  +SLAL+DAG+     VA ++   +        L D    E   G
Sbjct: 217 HVVENDGGILAASISAASLALVDAGIATKDFVAAMSCVYMPR--QLTPLLDPPRAELQTG 274

Query: 488 HMDFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
                +A       ++ +Q+D ++       M  A     R     + 
Sbjct: 275 APSLTLAMLVSSDEVSLLQLDGQVSTDVFEQMYEACAAGCREVGEAMK 322


>gi|326489392|dbj|BAK01679.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 749

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           D +      S    E +   +  +S+     V  I    + + + FG FV   G    L+
Sbjct: 533 DRNSKRLFFSMRPKESDELIQKRKSLMARLNVGDIVTCTIKRFVYFGIFVEVEG-VPALI 591

Query: 648 HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
              ++S +     S   + G  V  K++  D +  +I LS+K V  + 
Sbjct: 592 QQWEVSWDETLDPSVSYRIGQVVDAKVIQLDFNNSRIFLSLKDVKPSP 639


>gi|114330679|ref|YP_746901.1| RNA-binding S1 domain-containing protein [Nitrosomonas eutropha
           C91]
 gi|114307693|gb|ABI58936.1| RNA binding S1 domain protein [Nitrosomonas eutropha C91]
          Length = 740

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 9/153 (5%)

Query: 522 QQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQ-IRNVIG----MGGKVIR 575
           ++        L          R  +     P VE +     + I  V+G    + G    
Sbjct: 569 EKTFEQAAGFLRINDGDNPLDRSAVHPEAYPVVERILARLSKGIGQVMGHPETLKGLTAE 628

Query: 576 GIVEQTG---AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMD 632
              ++T       +I  +              A  +         +   I +G V  V  
Sbjct: 629 EFTDETFGLPTVRDILSELEKPGRDPRPEFKTATFQEGIESLTDLQSGMILEGVVTNVAA 688

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           FGAFV     +DGLVH+S L+ + +     +V 
Sbjct: 689 FGAFVDIGVHQDGLVHVSSLANKFIKDPHSIVN 721


>gi|50288139|ref|XP_446498.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525806|emb|CAG59425.1| unnamed protein product [Candida glabrata]
          Length = 233

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 27/234 (11%)

Query: 323 RDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLP 382
           +DI  ++GLL    GS+  +   T  +  VT G  E            +    +      
Sbjct: 3   QDIVVELGLLSEVDGSAKLLMNSTNVLCAVT-GPVEP-----------KARQELPTEMA- 49

Query: 383 CATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES-------DGS 435
                    G P+ RE       R    P++ +        +I  +I E+       +  
Sbjct: 50  LEVIVRPAKGVPTPREKYLEDKIRAIFTPLITRHKYPRQLCQITCQIMEAGENEQLHNQK 109

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGH------- 488
              A V  + LAL++AGV ++   A + + ++ D         I G  D           
Sbjct: 110 ELSACVNSALLALVNAGVALNDLAAAVTIAVIDDQSQENKAQYIIGPSDEELEKSSSVHT 169

Query: 489 MDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSES 542
           +  +V      +  + +    G  ++ ++   L+ ++   L++ +    VL++ 
Sbjct: 170 IAMEVGDNGKKVKRVLLIESNGIFNDKVIFDILELSESACLNLCSNWRGVLTKH 223



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 32/177 (18%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF---FPLTVNYQERTYAV 70
           + + +E G ++   DG+       T VL  V      K  Q+      L V  +      
Sbjct: 3   QDIVVELGLLSE-VDGSAKLLMNSTNVLCAVTGPVEPKARQELPTEMALEVIVRPA---- 57

Query: 71  GKIPGGYLRRESRPTENEILISRMIDRSIRPLF--SKCYKNETQVIINVMQHDLESSPH- 127
                     +  PT  E  +   I     PL    K  +   Q+   +M+       H 
Sbjct: 58  ----------KGVPTPREKYLEDKIRAIFTPLITRHKYPRQLCQITCQIMEAGENEQLHN 107

Query: 128 ----VVSMVAASAALMLSGLPFEGPVVGAQVDYING-------QYVLNPRLDEDQGS 173
                  + +A  AL+ +G+          +  I+        QY++ P  +E + S
Sbjct: 108 QKELSACVNSALLALVNAGVALNDLAAAVTIAVIDDQSQENKAQYIIGPSDEELEKS 164


>gi|330508866|ref|YP_004385294.1| DNA-directed RNA polymerase [Methanosaeta concilii GP-6]
 gi|328929674|gb|AEB69476.1| DNA-directed RNA polymerase [Methanosaeta concilii GP-6]
          Length = 194

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 18/98 (18%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----------- 657
              ++   PE+ +I +G+VV+++ FGAF+      DGL+H+SQ++ E +           
Sbjct: 71  NFDTLVFKPEMQEIIEGEVVEIVKFGAFLSLGPF-DGLLHVSQITNEYISYDEKNARLVS 129

Query: 658 AKTSDVVKEGDTVWVKLLDF--DDRG----KIKLSMKV 689
            +++  + EGD V  +++    +++     KI L+M+ 
Sbjct: 130 KESNKSLGEGDRVRARVIAVSLNEKEPRESKIGLTMRQ 167


>gi|72383697|ref|YP_293052.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
 gi|72003547|gb|AAZ59349.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
          Length = 431

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 11/210 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G+     +    G+   ++V   Q A          +    S  ++Q      +V  + I
Sbjct: 184 GVITNLKERFPKGLKVEVLVTREQNADGMVTISCRALELRKSWDKVQNLAKEGKVIRVKI 243

Query: 559 PPDQIRNVI----GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-----AREM 609
                  V     G+ G + R  +E      ++              E         +  
Sbjct: 244 NGFNRGGVTCDFEGLRGFIPRSQLEDGENHQSLVSKTISTAFLEVNPERRKLVLSEKKAA 303

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I S     E+ ++ +G+++ +  +G FV       GL+H S ++   +    +V + G++
Sbjct: 304 IASRFSELEIGQLIEGEILTIKPYGFFVDL-RGVSGLLHHSMVTNGSMRSLREVFQPGES 362

Query: 670 VWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           +   + D D  RG+I L+  +++   G+ I
Sbjct: 363 IKALITDLDPSRGRIGLNTALLEGPPGELI 392


>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337339|gb|EFH67756.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 159

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTR 357
           R DGR  + +R ++    +L R HGS+ + +GDT+ +  V  G +
Sbjct: 28  REDGRTPDQLRPLACSRNILHRPHGSASWSQGDTKVLAAV-YGPK 71


>gi|326428871|gb|EGD74441.1| eukaryotic translation initiation factor 2 subunit 1 [Salpingoeca
           sp. ATCC 50818]
          Length = 301

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE+  +   +V  + + GA+V        +G++ +S+LS  R+   + +V+ G T  V +
Sbjct: 14  PELEDVVMVEVKSIAEMGAYVELLEYDGVEGMILLSELSRRRIRSINKLVRVGKTEAVVV 73

Query: 675 LDFDD-RGKIKLSMKVVDQNT 694
           L  D+ RG I LS + V  + 
Sbjct: 74  LRVDEGRGYIDLSKRRVSPDE 94


>gi|269987055|gb|EEZ93329.1| translation initiation factor IF-2 subunit alpha [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 79

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
              +   IY  +V K++  G  V      ++G +HIS+LS   V    D+ KEGDT+  K
Sbjct: 1   MEIKEGDIYICRVKKLLQHGIIVTIGNEEKEGFIHISELSKRWVRDVKDIAKEGDTLVCK 60

Query: 674 LLDFDDRGKIKLSMKVV 690
           ++        +LS+K V
Sbjct: 61  VITLGQS--PELSIKRV 75


>gi|222085072|ref|YP_002543602.1| RNA-binding domain S1-containing transcriptional regulator
           [Agrobacterium radiobacter K84]
 gi|221722520|gb|ACM25676.1| RNA-binding domain S1-containing transcriptional regulator
           [Agrobacterium radiobacter K84]
          Length = 769

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEA----AREMIRSITDVPEVNKI--------YKGQVVK 629
             +  ID+   +      +AE+E      R   ++ T    +N+I         +G V  
Sbjct: 600 DPRQFIDEKFGLPTVRDIIAELEKPGRDPRPSFKTATFAEGINEISDLKPGMLLEGTVTN 659

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
           V  FGAFV     +DGLVH+SQL+   V    ++
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEI 693


>gi|159899862|ref|YP_001546109.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892901|gb|ABX05981.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 706

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V  V+D+GAF+      DGL+H SQ+           +  GD V V +   D DR 
Sbjct: 645 LKGTVRNVVDWGAFIDLGVKHDGLLHRSQIPRGL------SLSVGDIVDVSIQSIDPDRK 698

Query: 682 KIKL 685
           +I L
Sbjct: 699 RIAL 702


>gi|124025297|ref|YP_001014413.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. NATL1A]
 gi|123960365|gb|ABM75148.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
           marinus str. NATL1A]
          Length = 465

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 11/210 (5%)

Query: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558
           G+     +    G+   ++V   Q A          +    S  ++Q      +V  + I
Sbjct: 218 GVITNLKERFPKGLKVEVLVTREQNADGMVTISCRALELRKSWDKVQNLAKEGKVIRVKI 277

Query: 559 PPDQIRNVI----GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA-----AREM 609
                  V     G+ G + R  +E      ++              E         +  
Sbjct: 278 NGFNRGGVTCDFEGLRGFIPRSQLEDGENHQSLVSKTISTAFLEVNPERRKLVLSEKKAA 337

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDT 669
           I S     E+ ++ +G+++ +  +G FV       GL+H S ++   +    +V + G++
Sbjct: 338 IASRFSELEIGQLIEGEILTIKPYGFFVDL-RGVSGLLHHSMVTNGSMRSLREVFQPGES 396

Query: 670 VWVKLLDFDD-RGKIKLSMKVVDQNTGKPI 698
           +   + D D  RG+I L+  +++   G+ I
Sbjct: 397 IKALITDLDPSRGRIGLNTALLEGPPGELI 426


>gi|330930200|ref|XP_003302936.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
 gi|311321403|gb|EFQ88972.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
          Length = 327

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 43/268 (16%)

Query: 298 IQAKVVRTVMLDKKVRM-DGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGT 356
           + A+ VR     +K+R    R    +R I  Q  ++    GS+      +      +L  
Sbjct: 21  VFARTVREPQYIEKLRPTRSRGPNELRRIFLQTSIIPSASGSAYLEIPSSSPCTTSSLIP 80

Query: 357 REDEQYVD-SLSGTQ----RNDF------MMHYNFLPCAT-GEVSRMGAPSRREIGHGRL 404
                 +  S+ G +       F           F P AT      +   + R++G    
Sbjct: 81  PTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYIRDSTERDLGV--H 138

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDG---------------------SSSMATVCG 443
              A+  V+         + +V  I E D                      +     +  
Sbjct: 139 LETALRGVIIGERWPKSGVEVVVTILEGDEDGWWGDSGSEGSASGSGWGLLNVLAGCITV 198

Query: 444 SSLALMDAGVPISKPVAGIAMG-----LVKDGDDFIILSDISGDEDHLGHMDFKVAGTD- 497
           +S A+ DAG+     V G           K G     + D    E         V     
Sbjct: 199 ASAAMTDAGIDCVDMVCGGVAAITRNPGSKQGQGLARILDPCPAEHKDVVAACVVGYLGS 258

Query: 498 -SGITAMQMDMKIGGISENIMVMALQQA 524
              IT + M   +G   + ++  A+  A
Sbjct: 259 RDEITEIWMKGDVGSDPDALIEGAIHAA 286


>gi|302776692|ref|XP_002971496.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
 gi|300160628|gb|EFJ27245.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
          Length = 393

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 32/206 (15%)

Query: 516 IMVMALQQAKRGRLHILNEMSKVL-----SESRLQLGEFTPRVEIMAIPPDQIRN----- 565
           I+  +   ++  R   L     V       E R       P+          + +     
Sbjct: 129 ILDTSDDPSELERFRALQSRGPVPVPYKKCEPRKVDLSLHPKTSDEQFKKGDLLDRRITR 188

Query: 566 -VIGMGGKVIRGIVEQTGAKV----NIDDDGTVKIASSSLAEIEAAREMIRSITDVP--- 617
              G+GG  ++G  E  G       N+ + G   + + SL      + +  S    P   
Sbjct: 189 VFAGVGGHTVQGRWESFGKVHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEM 248

Query: 618 -EVNKIYKGQVVKVMDFGAFVHFCGARDG------------LVHISQLSTERVAKTSDVV 664
               K+  G+++ +      +                    L H+S++S + +   S + 
Sbjct: 249 FPPGKVISGRILSIEPLSGHIEMSLTATTSQDSSGWKKFGCLCHVSEVSYDFIQDLSTLY 308

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKV 689
           K    V VK+L  D +  +I L MK 
Sbjct: 309 KVSQWVQVKILKVDAETKRISLGMKA 334


>gi|227894504|ref|ZP_04012309.1| S1 family RNA-binding protein [Lactobacillus ultunensis DSM 16047]
 gi|227863663|gb|EEJ71084.1| S1 family RNA-binding protein [Lactobacillus ultunensis DSM 16047]
          Length = 120

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
             G +  + D G FV       GLVH S        +     K G  V V +L   ++G+
Sbjct: 10  VTGVINNITDLGIFVTLPNRHSGLVHHSDFGNNWPRERRQY-KIGQEVRVVVLHV-NKGR 67

Query: 683 IKLSMKVVDQNT 694
             LS+  V+   
Sbjct: 68  FSLSISRVNDPE 79


>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
 gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
          Length = 259

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 15/154 (9%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +  DI+   V + + D + R+DGR  +  R I  +  ++ +  GS+L   G+TQ +V 
Sbjct: 3   EDILMDIKRDYVLSRLRDGE-RIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVG 61

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V +   E            +   + +   +P A+      G P    I   R+  R I  
Sbjct: 62  VKMQPGEP-----FPDAPDKGIIITNAELVPLASPTFEP-GPPDENSIELARVVDRGIRE 115

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSS 437
                   +  +  +  + + I     + DG+  
Sbjct: 116 SEAVDLTKLCIEEGEKVWLIFIDIHALDDDGNLM 149



 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDF--FPLTVNYQERTYAVG 71
           R +++ET  IA+ ++G+ L   G T V+  V     ++ G+ F   P           V 
Sbjct: 33  RHIEIETNIIAK-AEGSALVKLGNTQVVVGV----KMQPGEPFPDAPDKGIIITNAELVP 87

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIR 100
                +      P EN I ++R++DR IR
Sbjct: 88  LASPTFE--PGPPDENSIELARVVDRGIR 114


>gi|329770462|ref|ZP_08261841.1| hypothetical protein HMPREF0433_01605 [Gemella sanguinis M325]
 gi|328836317|gb|EGF85983.1| hypothetical protein HMPREF0433_01605 [Gemella sanguinis M325]
          Length = 122

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I K +V  V  +GAF+     + GL+HIS+++   +   S  +K+ + + VK+L   D 
Sbjct: 10  DIIKVKVTAVKPYGAFIETRDGQVGLIHISEITNCFIFDISSYIKQDEILEVKVLSIKD- 68

Query: 681 GKIKLSM 687
            KI  ++
Sbjct: 69  NKINATL 75


>gi|298708904|emb|CBJ30860.1| rRNA biogenesis protein rrp5 [Ectocarpus siliculosus]
          Length = 2344

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 623  YKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DR 680
             KG V  V DFG F+    ++  G+ H S+ + E +   + V  EGD V   +L  + + 
Sbjct: 1837 VKGTVDTVKDFGVFIQIHDSKVRGMCHRSEAADETIDDLTQVYDEGDLVKAVVLKVNKNN 1896

Query: 681  GKIKLSMKV 689
             ++ L +K 
Sbjct: 1897 KRVSLGLKA 1905



 Score = 46.4 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 593  VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
            + +    +   +  R+        P+V    K  VV     G FV   G   G V +  L
Sbjct: 1716 LSLRPCRVEASKNKRKEAIKRDAAPKVGSTAKCYVVATSKSGCFVILNGGVSGRVLLKHL 1775

Query: 653  STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
            S   V+  +     G  V  K+L  + + G++ LS+K  D   G+
Sbjct: 1776 SDRFVSDPAQEFPAGKLVAGKVLAQEKETGRVSLSLKPSDVVGGE 1820



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G V +V  FG FV F G    L   S  +   V   S + +EGD+    +   D+  G++
Sbjct: 901 GYVCRVESFGVFVRFLGRFTALCPRSMAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRV 960



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
             VHIS++S ERV       K G  V  ++  
Sbjct: 511 AYVHISRISDERVEHVEKSYKPGQKVRCRVTG 542



 Score = 39.5 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   + +G+V  V  FG  V        LV  + L    V       K G  V  ++L  
Sbjct: 570 KPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTV 629

Query: 678 D-DRGKIKLSMK 688
           D    K  L++K
Sbjct: 630 DAGSSKSTLTLK 641



 Score = 38.7 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMDFGAFVHFCGARDGL 646
           D G+ K   +    +   +  + S     +  +     G V KV  FG  V F G   GL
Sbjct: 630 DAGSSKSTLTLKRSMVKDKREVISTYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGL 689

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRG---KIKLSM 687
           +    L+   +   S+    G  V   +   D      K+ LS+
Sbjct: 690 LPSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALSL 733


>gi|322377024|ref|ZP_08051517.1| S1 RNA binding domain protein [Streptococcus sp. M334]
 gi|321282831|gb|EFX59838.1| S1 RNA binding domain protein [Streptococcus sp. M334]
          Length = 129

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++
Sbjct: 9   KMKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHEALKVDEEVQVQVV 68

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           D D+  GK  LS++ +++ 
Sbjct: 69  DLDEFTGKASLSIRTLEEE 87


>gi|150020177|ref|YP_001305531.1| RNA-binding S1 domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149792698|gb|ABR30146.1| RNA binding S1 domain protein [Thermosipho melanesiensis BI429]
          Length = 662

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 557 AIPPDQI---RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSI 613
           AI P+       ++      +  + ++    +    D   ++ S    +          I
Sbjct: 532 AIHPEHYKIANEILKNNIYDLDYLSKKFNVGILTLTDIINELKSMGKEDNLPTPIFYNEI 591

Query: 614 TDVPEVN--KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           TD  E+      KG+V+ + DFG FV       G +H   +  E        +K  D + 
Sbjct: 592 TDFKELKIGMKLKGKVINITDFGIFVDIGLKESGFIHKKLIDKE--------IKINDIID 643

Query: 672 VKLLDFDDRGK-IKL-SMK 688
           V+++D D+  + IKL S +
Sbjct: 644 VEVIDIDNDLRYIKLKSRR 662


>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
           768-20]
 gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
           768-20]
          Length = 273

 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 92/268 (34%), Gaps = 42/268 (15%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
                 I+   +R ++    VR+DGR  + +R++S    ++    GS+  + G T+ +  
Sbjct: 9   KRFISYIRRNQIRRLISS-GVRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAG 67

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V +G  +                +++   LP A+   S +G P    I   R+  R I  
Sbjct: 68  VKVGLGQP-----FPDAPDEGVLIVNAEILPHASP-YSEIGPPDETAIELARVVDRGIRH 121

Query: 411 ------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP---------- 454
                   L       Y L +   +   DG+   A    +  AL    +P          
Sbjct: 122 SGFVDFKKLAIDQNKVYVLWVDLYVLNDDGNLVDAANLAALAALRSTMLPSAVKDETGVK 181

Query: 455 ------------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
                       +SK    +++G +    D  ++ D + +E+        V      I +
Sbjct: 182 LDRNNKTALPSDLSKAPIAVSIGKI----DNRLIVDPNFEEELSLDGRITVTIAQDSIVS 237

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLH 530
           +Q    +G  +E  +  A+  A   R  
Sbjct: 238 IQ--KTMGYFTEQELGQAVDLAYSVRDK 263



 Score = 46.4 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 45/230 (19%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATV-VYDRSLKD-GQDFFPLTVNYQERTYAVG 71
           R + + T  +   +DG+  A  G+T V+A V V          D   L VN +   +A  
Sbjct: 39  REVSITTNVV-NTADGSAEALLGKTRVVAGVKVGLGQPFPDAPDEGVLIVNAEILPHA-- 95

Query: 72  KIPGGYLRRESRPTENEILISRMIDRSIR-PLFSKCYK-----NETQVI---INVMQHDL 122
                       P E  I ++R++DR IR   F    K     N+  V+   + V+  D 
Sbjct: 96  ----SPYSEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNKVYVLWVDLYVLNDDG 151

Query: 123 E-SSPHVVSMVAASAALML---------------------SGLPFEGPVVGAQVDYINGQ 160
                  ++ +AA  + ML                     S L  + P+    +  I+ +
Sbjct: 152 NLVDAANLAALAALRSTMLPSAVKDETGVKLDRNNKTALPSDLS-KAPI-AVSIGKIDNR 209

Query: 161 YVLNPRLDEDQGSLD--LFVSGTQDAVLMVELEANQLSEDVVLDAIIFGH 208
            +++P  +E + SLD  + V+  QD+++ ++      +E  +  A+   +
Sbjct: 210 LIVDPNFEE-ELSLDGRITVTIAQDSIVSIQKTMGYFTEQELGQAVDLAY 258


>gi|308497422|ref|XP_003110898.1| hypothetical protein CRE_04585 [Caenorhabditis remanei]
 gi|308242778|gb|EFO86730.1| hypothetical protein CRE_04585 [Caenorhabditis remanei]
          Length = 526

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 3/131 (2%)

Query: 398 EIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISK 457
           E G+ R+  +    V+         + I   +   DG      +   +LAL  +G+    
Sbjct: 56  EFGNTRVLAQIT--VIFVNKYPGKVIDIEVTVLSDDGGVLSTAITAVTLALAHSGIEHMG 113

Query: 458 PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIM 517
             A   + L  +GD +I     S  ED +G + F         T M +  +   I   ++
Sbjct: 114 LTASAHVALKSNGD-YITDPSTSEAEDAIGGVTFAFVPNLGQTTCMIILEQNNRIIIELL 172

Query: 518 VMALQQAKRGR 528
                 AK G 
Sbjct: 173 EQKFANAKEGA 183



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 60/171 (35%)

Query: 5   HTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQ 64
              E  +  RPL ++ G    Q DG+  A +G T VLA                +TV + 
Sbjct: 30  KRSETTF--RPLCVKCGVFGAQ-DGSGYAEFGNTRVLA---------------QITVIF- 70

Query: 65  ERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLES 124
                V K PG                 ++ID                + + V+  D   
Sbjct: 71  -----VNKYPG-----------------KVID----------------IEVTVLSDDGGV 92

Query: 125 SPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQYVLNPRLDEDQGSL 174
                ++ A + AL  SG+   G    A V    NG Y+ +P   E + ++
Sbjct: 93  LS--TAITAVTLALAHSGIEHMGLTASAHVALKSNGDYITDPSTSEAEDAI 141


>gi|237837415|ref|XP_002368005.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
 gi|211965669|gb|EEB00865.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
 gi|221509233|gb|EEE34802.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
          Length = 352

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHG-RLARRAIHPVLPQTAQFPYT-LRIVS 427
           +R   +      P +    + +         H   L  R +   +      P + + +  
Sbjct: 157 ERASLLCRVGIAPFSGDWRADVTRSGGAAEEHEVALGVRKVVESVILADTCPRSLICLFV 216

Query: 428 EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLG 487
            + E+DG    A++  +SLAL+DAG+     VA ++   +        L D    E   G
Sbjct: 217 HVVENDGGILAASISAASLALVDAGIATKDFVAAMSCVYMPR--QLTPLLDPPRAELQTG 274

Query: 488 HMDFKVAGT--DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
                +A       ++ +Q+D ++       M  A     R     + 
Sbjct: 275 APSLTLAMLVSSGEVSLLQLDGQVSTDVFEQMYEACAAGCREVGEAMK 322


>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
 gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
          Length = 188

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 18/98 (18%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------A 658
            ++I  +P + ++ +G+VV+++DFGAF+ F GA DGL+H+SQ++ + +            
Sbjct: 72  FKAIVFMPMMQEVIEGKVVEIVDFGAFISF-GAMDGLLHVSQITDDFMSYDGKNARLISK 130

Query: 659 KTSDVVKEGD-----TVWVKLLDFDDRG-KIKLSMKVV 690
            ++  + EGD      V V + + D R  KI L+M+ V
Sbjct: 131 NSNRALAEGDYLRARIVAVSINERDPRESKIGLTMRQV 168


>gi|225861368|ref|YP_002742877.1| hypothetical protein SPT_1475 [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|225727163|gb|ACO23014.1| S1-type RNA-binding domain protein [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 128

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++
Sbjct: 9   KMKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVV 68

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           D D+  GK  LS++ +++ 
Sbjct: 69  DLDEFTGKASLSIRTLEEE 87


>gi|152995436|ref|YP_001340271.1| ribonuclease R [Marinomonas sp. MWYL1]
 gi|150836360|gb|ABR70336.1| ribonuclease R [Marinomonas sp. MWYL1]
          Length = 880

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 16/150 (10%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             Q   V G      R I   T A ++   D        +          ++       +
Sbjct: 623 VRQAHRVAGSPELKERKIYGYTHADMDGLGDSCSLTERRADEATRDVEAWLKCQYVEQHL 682

Query: 620 NKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSD-----------VVKEG 667
            + + G V  V  FG FV   G   DGLVHIS L  +      +           V + G
Sbjct: 683 GEPFDGVVTAVTSFGLFVELQGLFVDGLVHISGLGQDYFVHDMEHQAIIGERTGRVFRLG 742

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           DT+ V++ + + ++ KI LS   +D++  +
Sbjct: 743 DTLKVRVSNVNLEQRKIDLS---LDESAAR 769


>gi|60677861|gb|AAX33437.1| RE29317p [Drosophila melanogaster]
          Length = 261

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 341 FIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIG 400
              G+T+ + +V       E    S           + NF   +TG++  +     RE  
Sbjct: 1   MEYGNTKVLAIV---APPKELIRASARRMNMGVLNCYVNFAAFSTGDLDSVPE---RERH 54

Query: 401 HGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVA 460
              +  +A+ PV+ +T    + L I   I + DG      +    +AL++ G+     + 
Sbjct: 55  LSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDLIT 114

Query: 461 GIAMGLVKD 469
                + +D
Sbjct: 115 ASTACIYRD 123


>gi|164660949|ref|XP_001731597.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
 gi|159105498|gb|EDP44383.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
          Length = 1217

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673
           T   E+    +G V  V + G +V      D  V I +L  E V       + G  V   
Sbjct: 894 TAQLEIGMHIRGLVKAVTNHGVYVSLGPHTDARVMIKELFDEYVKDFRTKFQVGQCVRGT 953

Query: 674 LLDFDDRGKIKLSMK 688
           +L  +  G+I+LS+K
Sbjct: 954 ILQIEPNGQIELSLK 968



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 587  IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDG 645
            I+ +G +++  S         +            +  K  V  + ++G F+   G    G
Sbjct: 957  IEPNGQIEL--SLKKSRLEGVKPSAGAWSKIHEGEKVKAHVRGITEYGIFLQVDGTDVSG 1014

Query: 646  LVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            L H S+LS  + A        GD V   +L  D D+ ++   +K
Sbjct: 1015 LCHKSELSDNKSANAIRAFAVGDRVKAVVLKMDADKRRVAFGLK 1058



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                  + ++ +  + KV     FV   G  DG+V     S  R+       K    + 
Sbjct: 531 MRVSEVPIGQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVRLTHPEKKYKPNLELK 590

Query: 672 VKLLDFDD-RGKIKLSMK 688
            +++  D  R +I L++K
Sbjct: 591 ARIIHTDPMRNRIVLTLK 608


>gi|116513515|ref|YP_812421.1| RNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092830|gb|ABJ57983.1| RNA binding protein (S1 domain) [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 117

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +   G +  V D G FV     + GLVH +   ++   K     + GD V V + + 
Sbjct: 4   KVGQRLDGVINNVTDLGIFVTLPKHKSGLVHRNDFGSDWPRK-RQHWQVGDQVRVVVQNL 62

Query: 678 DDRGKIKLSMKVVDQN 693
             +G++ LS++ V+  
Sbjct: 63  -RKGRLDLSIRRVNDP 77


>gi|15903435|ref|NP_358985.1| hypothetical protein spr1392 [Streptococcus pneumoniae R6]
 gi|169833744|ref|YP_001694942.1| hypothetical protein SPH_1651 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172079646|ref|ZP_02709919.2| S1-type RNA-binding domain [Streptococcus pneumoniae CDC1873-00]
 gi|182684493|ref|YP_001836240.1| hypothetical protein SPCG_1523 [Streptococcus pneumoniae CGSP14]
 gi|183603151|ref|ZP_02713000.2| S1-type RNA-binding domain [Streptococcus pneumoniae SP195]
 gi|183603555|ref|ZP_02715714.2| S1-type RNA-binding domain [Streptococcus pneumoniae CDC0288-04]
 gi|183603779|ref|ZP_02721230.2| S1-type RNA-binding domain [Streptococcus pneumoniae MLV-016]
 gi|225854977|ref|YP_002736489.1| hypothetical protein SPJ_1441 [Streptococcus pneumoniae JJA]
 gi|225859292|ref|YP_002740802.1| hypothetical protein SP70585_1576 [Streptococcus pneumoniae 70585]
 gi|15459042|gb|AAL00196.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|168996246|gb|ACA36858.1| S1-type RNA-binding domain [Streptococcus pneumoniae Hungary19A-6]
 gi|172041893|gb|EDT49939.1| S1-type RNA-binding domain [Streptococcus pneumoniae CDC1873-00]
 gi|182629827|gb|ACB90775.1| hypothetical protein SPCG_1523 [Streptococcus pneumoniae CGSP14]
 gi|183572705|gb|EDT93233.1| S1-type RNA-binding domain [Streptococcus pneumoniae SP195]
 gi|183574311|gb|EDT94839.1| S1-type RNA-binding domain [Streptococcus pneumoniae CDC0288-04]
 gi|183578855|gb|EDT99383.1| S1-type RNA-binding domain [Streptococcus pneumoniae MLV-016]
 gi|225721788|gb|ACO17642.1| S1-type RNA-binding domain protein [Streptococcus pneumoniae 70585]
 gi|225722217|gb|ACO18070.1| S1-type RNA-binding domain protein [Streptococcus pneumoniae JJA]
          Length = 128

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLL 675
             ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++
Sbjct: 9   KMKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVV 68

Query: 676 DFDD-RGKIKLSMKVVDQN 693
           D D+  GK  LS++ +++ 
Sbjct: 69  DLDEFTGKASLSIRTLEEE 87


>gi|294788446|ref|ZP_06753689.1| S1 RNA binding domain protein [Simonsiella muelleri ATCC 29453]
 gi|294483877|gb|EFG31561.1| S1 RNA binding domain protein [Simonsiella muelleri ATCC 29453]
          Length = 770

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 564 RNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR------------ 611
            ++IG         V+Q  A   ID+   +      LAE+E      R            
Sbjct: 597 NDLIGNR-----EKVKQIKASDFIDERFGLPTILDILAELEKPARDPRGEFKMATFTEGV 651

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD-VVKEGDTV 670
           +     +V  I +G V  V +FGAFV     +DGLVHIS L+ + V+   D V       
Sbjct: 652 NEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISMLADKFVSDPRDVVKASDVVK 711

Query: 671 WVKLLDFDDRGKIKLSMKVVDQNTGK 696
              +     R +I L+M++ D    +
Sbjct: 712 VKVVEVDVARKRIALTMRLDDDKPTE 737


>gi|239828270|ref|YP_002950894.1| ribonuclease R [Geobacillus sp. WCH70]
 gi|239808563|gb|ACS25628.1| ribonuclease R [Geobacillus sp. WCH70]
          Length = 762

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       ++ ++     ++   + G +  V +FG FV      +GLVH+S L+
Sbjct: 601 DMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT 660

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
            +              +T  V + GD + V++++ +   +I
Sbjct: 661 DDYYRYDERHYAMIGERTGKVYRIGDEITVRVINVNKDERI 701


>gi|71004318|ref|XP_756825.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
 gi|46095627|gb|EAK80860.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
          Length = 1563

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 591  GTVKIASSSLAE--IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLV 647
            G++K  +    E  +  A++  + + D    +K+ KG V  ++ FG FV   G    GL 
Sbjct: 1029 GSIKPRAERAEERALLDAKKRPKRLADFKVGDKV-KGFVKNIIGFGVFVQIEGTNVSGLA 1087

Query: 648  HISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMK 688
            H+++LS  +  +     + GD V   +L  + ++ KI   +K
Sbjct: 1088 HMNELSDGKADEALKAFRVGDKVRAIVLRINEEKKKISFGLK 1129



 Score = 40.7 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 636 FVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           F+   G  DG+V  +  +  ++ +     K G +V  +++D D +R +I L++K     +
Sbjct: 604 FLQLQGHVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVMDVDPNRNRIVLTLKKSLVKS 663

Query: 695 GKPIV 699
             PIV
Sbjct: 664 DLPIV 668


>gi|302779850|ref|XP_002971700.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
 gi|300160832|gb|EFJ27449.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
          Length = 479

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            ++      + A      S        +I  G++  +  FG F+      D    +S L 
Sbjct: 266 PLSGHIEMSLTATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLA-KSDVASSLSIL- 323

Query: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
              V+  S + K G  V VK+L  D +  +I L MKV
Sbjct: 324 ---VSNLSTLYKVGQWVQVKILKVDAETKRISLGMKV 357


>gi|315274597|ref|ZP_07869468.1| general stress protein 13 [Listeria marthii FSL S4-120]
 gi|313615773|gb|EFR89030.1| general stress protein 13 [Listeria marthii FSL S4-120]
          Length = 60

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
           EV    +G+V  + +FGAFV   G + GLVHIS+++   V   +D++
Sbjct: 4   EVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDIL 50


>gi|255513911|gb|EET90176.1| DNA-directed RNA polymerase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 195

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 23/137 (16%)

Query: 568 GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQV 627
           G   K I  IV   G K +I D GT+     S            ++T +P+V ++  G V
Sbjct: 36  GKIDKDIGLIVAIFGIK-DITD-GTIYPGDPSTHHGVE----YDALTYMPKVGEVVAGDV 89

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLD 676
            ++++FGAFV      DGLVH+SQ++ + +            K+   +K+GD+V+ K+  
Sbjct: 90  SEMVEFGAFVRMGPM-DGLVHVSQIAGDFLSFDRKTQTFVSKKSGKTLKKGDSVYAKVST 148

Query: 677 FD-----DRGKIKLSMK 688
                     KI L+M+
Sbjct: 149 VSIKSSVKDSKIALTMR 165


>gi|205375138|ref|ZP_03227929.1| ribonuclease R (RNase R) [Bacillus coahuilensis m4-4]
          Length = 793

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K+   ++       ++ ++   + ++ + + G +  V +FG FV      +GLVH+
Sbjct: 600 EHTSKMERRAVDAERETDDLKKAEYMLDKIGEEFDGIISSVTNFGMFVELSNTIEGLVHV 659

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK-IKL---SMKVVDQNT 694
           S ++ +              +T  V + GD + V++++ +   + I      MK V++  
Sbjct: 660 SYMTDDYYRFDERHMAMIGERTGQVFRIGDEITVRVVNVNKDERAIDFEIVGMKTVNRPP 719


>gi|308810054|ref|XP_003082336.1| transcriptional accessory protein (ISS) [Ostreococcus tauri]
 gi|116060804|emb|CAL57282.1| transcriptional accessory protein (ISS) [Ostreococcus tauri]
          Length = 948

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A    R+I D+    +I    V  V+ FG F+     RD L+H+S L       + DVV 
Sbjct: 868 AARSARTIDDLKPGEEITDAVVRNVVPFGVFLDLGIGRDALLHVSALPRG----SRDVV- 922

Query: 666 EGDTVWVKLLDFDD-RGKIKLSM 687
            GD + V+++D D  R ++ +++
Sbjct: 923 VGDLLDVRVVDVDRARARVSVTL 945


>gi|331703806|ref|YP_004400493.1| ribonuclease R [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802361|emb|CBW54515.1| Ribonuclease R [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 704

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           NI +D   K        I+A          + +VN  Y   +  V+ FG F+      +G
Sbjct: 595 NIINDTETKSVECEREVIKACMCEY----MLNKVNNTYTATISAVLKFGIFIQLDNLVEG 650

Query: 646 LVHISQLSTERV--------AKTSD-VVKEGDTVWVKLLDFDDRGK 682
           LVHIS ++++ V         K  +   + G  V VKL++ D + +
Sbjct: 651 LVHISNMNSDLVYDETNRILIKPDNTYYRMGQKVKVKLINVDIKKR 696


>gi|47218207|emb|CAF97071.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 613

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----AKTSDVVKEGDTVWVKLLDF 677
           +  G+V     FGAFV     R GL+H S ++ +++     + S  +  G+ V V++L+ 
Sbjct: 538 VLTGRVDNTALFGAFVDIGVGRSGLIHKSNITPDKLPISQRRRSLALGPGERVEVRVLNV 597

Query: 678 D-DRGKIKLSM 687
           D  RG+I L +
Sbjct: 598 DHQRGRIGLDL 608


>gi|146296343|ref|YP_001180114.1| ribonuclease R [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409919|gb|ABP66923.1| RNAse R [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 726

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 600 LAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-- 657
                   E+ +      ++ ++++G +  V  FG FV      +GLV +S L  +    
Sbjct: 626 EEAERETVELKKVEFMTDKIGQVFEGIISNVTPFGFFVELENTIEGLVRVSSLEDDYYVF 685

Query: 658 ---------AKTSDVVKEGDTVWVKLLD 676
                     K+  V K GD V V+++ 
Sbjct: 686 NEKTYQLIGEKSKKVYKIGDKVKVRVIS 713


>gi|332072330|gb|EGI82813.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17570]
          Length = 119

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++ +  KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D
Sbjct: 1   MKIGEKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFTGKASLSIRTLEEE 78


>gi|198427762|ref|XP_002130709.1| PREDICTED: similar to S1 RNA-binding domain-containing protein 1
           [Ciona intestinalis]
          Length = 795

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
           S           +G+V  V+DFG FV      DGLVH S +  +   +   V+   D + 
Sbjct: 709 SCITDLRCGTTMQGKVSNVVDFGIFVDIGVGTDGLVHSSDMKGKW-EELRHVLGPNDLIS 767

Query: 672 VKLLDFD-DRGKIKL 685
           V + + +  + +I L
Sbjct: 768 VAVTNVNKPKKRISL 782


>gi|242373018|ref|ZP_04818592.1| exoribonuclease R [Staphylococcus epidermidis M23864:W1]
 gi|242349172|gb|EES40773.1| exoribonuclease R [Staphylococcus epidermidis M23864:W1]
          Length = 792

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG FV      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFVELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           + ++ +              + + V + GD V VK+   D   ++
Sbjct: 661 ANMTDDYYHFDERQMALIGERQAKVFRIGDEVKVKVTHVDVDERM 705


>gi|83319777|ref|YP_424091.1| 3'-5' exoribonuclease [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283663|gb|ABC01595.1| Rnase R (VacB) and RNase II family 3'-5' exoribonucleases
           [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 704

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           NI +D   K        I+A          + +VN  Y   +  V+ FG F+      +G
Sbjct: 595 NIINDTETKSVECEREVIKACMCEY----MLNKVNNTYTATISAVLKFGIFIQLDNLVEG 650

Query: 646 LVHISQLSTERV--------AKTSD-VVKEGDTVWVKLLDFDDRGK 682
           LVHIS ++++ V         K  +   + G  V VKL++ D + +
Sbjct: 651 LVHISNMNSDLVYDETNRILIKPDNTYYRMGQKVKVKLINVDIKKR 696


>gi|85713281|ref|ZP_01044304.1| Exoribonuclease R [Idiomarina baltica OS145]
 gi|85692899|gb|EAQ30874.1| Exoribonuclease R [Idiomarina baltica OS145]
          Length = 785

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 589 DDGTVKIASSSLAEIEAAR---EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-D 644
           DD  +  + +     +A R   E ++       +   + G +  V +FG FV     + D
Sbjct: 608 DDLGIHCSHTERRADDATRQVDEWLKCEFMQDHIGSSFTGVIAAVTNFGLFVRLDEYQID 667

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GLVHIS L  +               +  V + GD V V++   + D  KI L +   + 
Sbjct: 668 GLVHISNLGDDYYQFDNTKNMLVGENSHRVFRLGDKVEVRVKQVNLDDRKIDLELLSAES 727

Query: 693 NTGK 696
            TGK
Sbjct: 728 PTGK 731


>gi|256383797|gb|ACU78367.1| 3'-5' exoribonuclease, VacB/RNase II family [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384627|gb|ACU79196.1| 3'-5' exoribonuclease, VacB/RNase II family [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455351|gb|ADH21586.1| 3'-5' exoribonuclease, VacB/RNase II family [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 704

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           NI +D   K        I+A          + +VN  Y   +  V+ FG F+      +G
Sbjct: 595 NIINDTETKSVECEREVIKACMCEY----MLNKVNNTYTATISAVLKFGIFIQLDNLVEG 650

Query: 646 LVHISQLSTERV--------AKTSD-VVKEGDTVWVKLLDFDDRGK 682
           LVHIS ++++ V         K  +   + G  V VKL++ D + +
Sbjct: 651 LVHISNMNSDLVYDETNRILIKPDNTYYRMGQKVKVKLINVDIKKR 696


>gi|293347888|ref|XP_001059624.2| PREDICTED: S1 RNA binding domain 1-like [Rattus norvegicus]
 gi|293359767|ref|XP_237474.5| PREDICTED: S1 RNA binding domain 1 [Rattus norvegicus]
          Length = 980

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVK 673
           +V  I  G+V     FG FV     + GL+ I  ++  +++KT       +  G+ V VK
Sbjct: 902 QVGTILTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKKRRSLGLGPGEKVEVK 961

Query: 674 LLDFD-DRGKIKLSM 687
           +L  D  R +I L +
Sbjct: 962 VLSVDIPRSRISLDL 976


>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
 gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
          Length = 521

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 112/305 (36%), Gaps = 57/305 (18%)

Query: 253 RVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHSSWNEGEIVSVFEDIQAKVVRTVMLDKKV 312
           +   +   K    KQ  ++ + +      ++ + N     ++ +++Q K+     +    
Sbjct: 103 KAVDYFRRKQAFLKQQMEVIEGV---LPEKYRARN-----AIVDNLQKKI----NVYCSQ 150

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R+DGR  +  R++   VG      GS L + G+T+ +  V+  +  +   V    GT   
Sbjct: 151 RIDGRKCDEFREVKVIVG---SELGSCLVMLGETKVLAQVSC-SLVEPSTVRGNMGTVE- 205

Query: 373 DFMMHYNFLPCATG--EVSRMGAPS---RR--EIGHGRLARRAIHPVLPQTAQFPYTLRI 425
              +H +  P A+   E  R+G+      R  E+ +       +  +  +T +  + +RI
Sbjct: 206 ---VHVDMSPMASPDYEDGRLGSKGLELMRILELLYRNSGVIDLESLCLRTFKQVWQIRI 262

Query: 426 VSEITESDGSSSMATVCGSSLALM---------------------DAGVPIS-----KPV 459
              +  SDGS        S  AL                      D  +PIS      PV
Sbjct: 263 DVHVLASDGSLVDCACIASLTALAHFRRPDVSVLPDSIIIASHGNDEKMPISLNIYHMPV 322

Query: 460 AGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVM 519
             I  G+  DG + I  +D   +E  L             I A+        +SE ++V 
Sbjct: 323 C-ITFGITSDGQNIIDPTD--KEEQCLRGSLIVATNKRHEICALHQSGNFL-LSEQLIVQ 378

Query: 520 ALQQA 524
            + +A
Sbjct: 379 CVDRA 383


>gi|146318426|ref|YP_001198138.1| ribosomal protein S1-like DNA-binding protein [Streptococcus suis
           05ZYH33]
 gi|145689232|gb|ABP89738.1| putative ribosomal protein S1-like DNA-binding protein
           [Streptococcus suis 05ZYH33]
          Length = 43

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 637 VHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
           + +C   DGLVHISQ+S +RV    D +  G  V VK L 
Sbjct: 4   LKYCQVFDGLVHISQISHKRVENPKDALSVGQEVTVKFLK 43


>gi|254580403|ref|XP_002496187.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
 gi|238939078|emb|CAR27254.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
          Length = 224

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 20/224 (8%)

Query: 325 ISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCA 384
           I A  G+L    GSS F    T+ +  VT G  E +   +  +       +         
Sbjct: 3   IIASTGILNHVDGSSEFESHSTKVVCSVT-GPIEPKARQELPTQLALEIIV--------- 52

Query: 385 TGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSS------- 437
                  G P+ RE       R  + P++ +        +I  ++ E+            
Sbjct: 53  ---RPAKGVPNTREKLIEDKLRGVLTPLIARYLYPRRLCQITFQVMEAGEPELEFSQREL 109

Query: 438 MATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTD 497
              +  + LAL+D+G+ +    + + + ++K        +    +   +  +  ++  + 
Sbjct: 110 SCCINAAVLALVDSGIGLLAMASSVPLAIIKGQLVVDPNAQQLQESQSVHTLALEITESG 169

Query: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541
             +  + +    G  ++N +   L Q +   L ++ E+ KVL +
Sbjct: 170 KNVQNILLLDSTGAFTQNELFQILSQGEERCLTLVQELRKVLGD 213



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 40/219 (18%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQD---FFPLTVNYQERTYAVGKIPGGYLRRESRP 84
           DG+       T V+ +V      K  Q+      L +  +                +  P
Sbjct: 14  DGSSEFESHSTKVVCSVTGPIEPKARQELPTQLALEIIVRPA--------------KGVP 59

Query: 85  TENEILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHV--------VSMVAA 134
              E LI   +   + PL ++    +   Q+   VM+      P +          + AA
Sbjct: 60  NTREKLIEDKLRGVLTPLIARYLYPRRLCQITFQVMEA---GEPELEFSQRELSCCINAA 116

Query: 135 SAALMLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGS-------LDLFVSGTQDAVLM 187
             AL+ SG+          +  I GQ V++P   + Q S       L++  SG     ++
Sbjct: 117 VLALVDSGIGLLAMASSVPLAIIKGQLVVDPNAQQLQESQSVHTLALEITESGKNVQNIL 176

Query: 188 VELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCA 226
           +       +++ +   +  G   C  +++   +L K+  
Sbjct: 177 LLDSTGAFTQNELFQILSQGEERCLTLVQ---ELRKVLG 212


>gi|299821975|ref|ZP_07053863.1| ribonuclease R [Listeria grayi DSM 20601]
 gi|299817640|gb|EFI84876.1| ribonuclease R [Listeria grayi DSM 20601]
          Length = 783

 Score = 52.2 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           IR  +  G      I ++      I D  + K+   ++       E+ ++   V +V + 
Sbjct: 573 IRKYLIEGDVSDATIAKEAEQLPEIADHSS-KMERRAVEAERETDELKKTEYMVDKVGER 631

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKEGDTVW 671
           + G +  V +FG F+      +GLVH+S +  +              +T+ V + GD V 
Sbjct: 632 FLGIISSVTNFGMFIELPNTIEGLVHVSAMKGDYFKFQPNQLAMIGERTAQVYRIGDEVE 691

Query: 672 VKLLDFD 678
           V++   D
Sbjct: 692 VEVTKVD 698


>gi|283769944|ref|ZP_06342836.1| ribonuclease R [Staphylococcus aureus subsp. aureus H19]
 gi|283460091|gb|EFC07181.1| ribonuclease R [Staphylococcus aureus subsp. aureus H19]
          Length = 790

 Score = 51.8 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNMIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|282916124|ref|ZP_06323887.1| ribonuclease R [Staphylococcus aureus subsp. aureus D139]
 gi|282320072|gb|EFB50419.1| ribonuclease R [Staphylococcus aureus subsp. aureus D139]
          Length = 790

 Score = 51.8 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNMIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|298230730|ref|ZP_06964411.1| hypothetical protein SpneCMD_08666 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254949|ref|ZP_06978535.1| hypothetical protein SpneCM_04962 [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503273|ref|YP_003725213.1| RNA binding protein [Streptococcus pneumoniae TCH8431/19A]
 gi|298238868|gb|ADI69999.1| RNA binding protein [Streptococcus pneumoniae TCH8431/19A]
 gi|327389723|gb|EGE88068.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04375]
 gi|332200099|gb|EGJ14172.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
          Length = 119

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D
Sbjct: 1   MKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFTGKASLSIRTLEEE 78


>gi|150400715|ref|YP_001324481.1| DNA-directed RNA polymerase subunit E' [Methanococcus aeolicus
           Nankai-3]
 gi|150013418|gb|ABR55869.1| DNA-directed RNA polymerase [Methanococcus aeolicus Nankai-3]
          Length = 195

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 20/100 (20%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
              PE+ +I +G++V V++FG FV      DGL+HISQ+  + V            ++  
Sbjct: 76  CYEPELYEIIEGEIVDVVEFGLFVRLGP-LDGLIHISQIMDDFVSYDPQRGAIIGKESGK 134

Query: 663 VVKEGDTVWVKLLDF-----DDRG-KIKLSMKVVDQNTGK 696
           V+++GD V  +++         RG KI L+M+   Q  GK
Sbjct: 135 VIEKGDKVRARIVAISLREAKRRGSKIALTMR--QQGLGK 172


>gi|148988583|ref|ZP_01820016.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925784|gb|EDK76859.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP6-BS73]
          Length = 119

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D
Sbjct: 1   MKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFTGKASLSIRTLEEE 78


>gi|326915256|ref|XP_003203935.1| PREDICTED: s1 RNA-binding domain-containing protein 1-like
           [Meleagris gallopavo]
          Length = 861

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVKL 674
           V  +  G+V     FG FV     + GL+ +  ++  +++K        +  G+ V VK+
Sbjct: 784 VGTVLTGKVENATPFGVFVDIGVGKAGLIPVRNITESKLSKVKKRRSLGLGPGERVEVKV 843

Query: 675 LDFD-DRGKIKLSM 687
           L+ D  R +I L +
Sbjct: 844 LNVDIPRLRITLDL 857


>gi|15901381|ref|NP_345985.1| hypothetical protein SP_1537 [Streptococcus pneumoniae TIGR4]
 gi|111658380|ref|ZP_01409067.1| hypothetical protein SpneT_02000459 [Streptococcus pneumoniae
           TIGR4]
 gi|116516485|ref|YP_816826.1| hypothetical protein SPD_1366 [Streptococcus pneumoniae D39]
 gi|148984885|ref|ZP_01818138.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|148992573|ref|ZP_01822241.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997400|ref|ZP_01825005.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003241|ref|ZP_01828137.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007550|ref|ZP_01831185.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|149011775|ref|ZP_01832971.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|149021811|ref|ZP_01835818.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|168487507|ref|ZP_02712015.1| S1-type RNA-binding domain [Streptococcus pneumoniae CDC1087-00]
 gi|168493438|ref|ZP_02717581.1| S1-type RNA-binding domain [Streptococcus pneumoniae CDC3059-06]
 gi|194397892|ref|YP_002038169.1| hypothetical protein SPG_1463 [Streptococcus pneumoniae G54]
 gi|221232248|ref|YP_002511401.1| S1 RNA binding domain protein [Streptococcus pneumoniae ATCC
           700669]
 gi|237650219|ref|ZP_04524471.1| hypothetical protein SpneC1_05767 [Streptococcus pneumoniae CCRI
           1974]
 gi|237820898|ref|ZP_04596743.1| hypothetical protein SpneC19_00962 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303255323|ref|ZP_07341393.1| hypothetical protein CGSSpBS455_07573 [Streptococcus pneumoniae
           BS455]
 gi|303260164|ref|ZP_07346136.1| hypothetical protein CGSSp9vBS293_05017 [Streptococcus pneumoniae
           SP-BS293]
 gi|303262554|ref|ZP_07348495.1| hypothetical protein CGSSp14BS292_09842 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264956|ref|ZP_07350871.1| hypothetical protein CGSSpBS397_09433 [Streptococcus pneumoniae
           BS397]
 gi|303266419|ref|ZP_07352307.1| hypothetical protein CGSSpBS457_07401 [Streptococcus pneumoniae
           BS457]
 gi|303269405|ref|ZP_07355175.1| hypothetical protein CGSSpBS458_05714 [Streptococcus pneumoniae
           BS458]
 gi|307068181|ref|YP_003877147.1| hypothetical protein SPAP_1559 [Streptococcus pneumoniae AP200]
 gi|307127745|ref|YP_003879776.1| S1-type RNA-binding domain-containing protein [Streptococcus
           pneumoniae 670-6B]
 gi|14973026|gb|AAK75625.1| putative general stress protein 13 [Streptococcus pneumoniae TIGR4]
 gi|116077061|gb|ABJ54781.1| general stress protein 13, putative [Streptococcus pneumoniae D39]
 gi|147756455|gb|EDK63496.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758701|gb|EDK65698.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760909|gb|EDK67879.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764206|gb|EDK71138.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922907|gb|EDK74023.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|147928590|gb|EDK79604.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930047|gb|EDK81034.1| general stress protein 13, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|183569680|gb|EDT90208.1| S1-type RNA-binding domain [Streptococcus pneumoniae CDC1087-00]
 gi|183576286|gb|EDT96814.1| S1-type RNA-binding domain [Streptococcus pneumoniae CDC3059-06]
 gi|194357559|gb|ACF56007.1| hypothetical protein SPG_1463 [Streptococcus pneumoniae G54]
 gi|220674709|emb|CAR69282.1| putative S1 RNA binding domain protein [Streptococcus pneumoniae
           ATCC 700669]
 gi|301794546|emb|CBW36990.1| putative S1 RNA binding domain protein [Streptococcus pneumoniae
           INV104]
 gi|301800370|emb|CBW33001.1| putative S1 RNA binding domain protein [Streptococcus pneumoniae
           OXC141]
 gi|301802255|emb|CBW35007.1| putative S1 RNA binding domain protein [Streptococcus pneumoniae
           INV200]
 gi|302597691|gb|EFL64767.1| hypothetical protein CGSSpBS455_07573 [Streptococcus pneumoniae
           BS455]
 gi|302636271|gb|EFL66765.1| hypothetical protein CGSSp14BS292_09842 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638661|gb|EFL69124.1| hypothetical protein CGSSpBS293_05017 [Streptococcus pneumoniae
           SP-BS293]
 gi|302641073|gb|EFL71450.1| hypothetical protein CGSSpBS458_05714 [Streptococcus pneumoniae
           BS458]
 gi|302643997|gb|EFL74256.1| hypothetical protein CGSSpBS457_07401 [Streptococcus pneumoniae
           BS457]
 gi|302645475|gb|EFL75707.1| hypothetical protein CGSSpBS397_09433 [Streptococcus pneumoniae
           BS397]
 gi|306409718|gb|ADM85145.1| hypothetical protein SPAP_1559 [Streptococcus pneumoniae AP200]
 gi|306484807|gb|ADM91676.1| S1-type RNA-binding domain protein [Streptococcus pneumoniae
           670-6B]
 gi|332073875|gb|EGI84353.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41301]
 gi|332074292|gb|EGI84769.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17545]
 gi|332199582|gb|EGJ13657.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41317]
 gi|332200978|gb|EGJ15049.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47901]
          Length = 119

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D
Sbjct: 1   MKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHETLKVDEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFTGKASLSIRTLEEE 78


>gi|195107981|ref|XP_001998571.1| GI24046 [Drosophila mojavensis]
 gi|193915165|gb|EDW14032.1| GI24046 [Drosophila mojavensis]
          Length = 239

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R++  +   L R  GS ++ +G T  ++   LG  E +    S+ G+      +  N+ 
Sbjct: 14  LREMHCKFNPLSRCDGSVMYSQGAT-VVIAAVLGPIEVKTQNLSIEGSY-----LECNYR 67

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
           P A       G P  +E       R  +   L   A     + +  +  E  GS     +
Sbjct: 68  PKA-------GLPQVKERIREAAIRDVLELALLSEAYPRAKMSLQVQELEDRGSIDACAL 120

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAG 495
             + LA++  G+P+    A +   ++ +  DF  + D    E       F  A 
Sbjct: 121 NAACLAMLIGGLPLKYSFAAVHC-IINEKGDF--ILDPEESETQHQKASFTFAF 171


>gi|168704816|ref|ZP_02737093.1| RNA binding S1 domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 1097

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRG 681
            KG V+ V+ FGAFV       GLVHISQ++   +    DVV  GD V V +++      
Sbjct: 865 LKGTVLNVVPFGAFVDIGLKESGLVHISQMANRYIKSPYDVVSVGDVVTVWVMEVKAGEK 924

Query: 682 KIKLSMKVVDQNTGKP 697
           KI LSM    Q   +P
Sbjct: 925 KISLSMIQPGQERRQP 940


>gi|156378172|ref|XP_001631018.1| predicted protein [Nematostella vectensis]
 gi|156218050|gb|EDO38955.1| predicted protein [Nematostella vectensis]
          Length = 1771

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +   +  G V  +M +G FV F     GL   S ++   V+  +   K G T+  ++ + 
Sbjct: 672 KPGMVLPGFVKLLMGYGVFVEFAPGILGLAPNSFIANHFVSDAASHFKIGQTLVAQVNEV 731

Query: 678 D-DRGKIKLSMKVVDQNTGKP 697
           D +R +  +S+K  D N G  
Sbjct: 732 DAERQRFLVSLKQSDLNPGSD 752



 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE 666
                   +  +   I +G ++ +  FG  V       GLV    L+   +      + E
Sbjct: 464 INKPFMRYEDIKPGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTE 523

Query: 667 GDTVWVKLLDFDD-RGKIKLSMK 688
           G  V  ++L  D  + ++ L+ K
Sbjct: 524 GKVVKCRVLTVDPGQRRLHLTHK 546



 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 582 GAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG 641
             +V   D G  ++  +    + ++   + +     +      G +  V ++G  V F  
Sbjct: 528 KCRVLTVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVTFYN 587

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
              GLV   QL  +       V   G  +   ++  + D+ K+KLS+K 
Sbjct: 588 NVKGLVPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKA 636



 Score = 44.1 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +V  I +G V    + G FV         V I  LS   V +   +   G  V  K+L  
Sbjct: 1266 DVGDIVRGYVSCATNIGVFVSLGRNIKARVQIKNLSHFYVKEWKPLFPVGKLVTGKVLSI 1325

Query: 678  DD-RGKIKLSMKVVD 691
            +   G+I+LS+K  D
Sbjct: 1326 NPTNGQIELSLKGRD 1340



 Score = 41.4 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 23/92 (25%)

Query: 620  NKIYKGQVVKVMD-FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTV-------- 670
            ++I  G+V +VM   G F+     + GLV ++ ++       +D  K    V        
Sbjct: 1146 DQIVPGRVTRVMPTSGLFIQLPLHKSGLVALTDIADHFTENPTDGYKVKQIVRWLQSQAD 1205

Query: 671  --------WVK------LLDFDDRGKIKLSMK 688
                     VK      +L   D G   LS++
Sbjct: 1206 RTNPTDGYKVKQIVRCCILSKKDNGHYDLSLR 1237


>gi|307704419|ref|ZP_07641331.1| hypothetical protein SMSK597_0444 [Streptococcus mitis SK597]
 gi|307622032|gb|EFO01057.1| hypothetical protein SMSK597_0444 [Streptococcus mitis SK597]
          Length = 119

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D
Sbjct: 1   MKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIHEALKVDEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFTGKASLSIRTLEEE 78


>gi|118431043|ref|NP_147227.2| translation initiation factor IF-2 subunit alpha [Aeropyrum pernix
           K1]
 gi|20532404|sp|Q9YF02|IF2A_AERPE RecName: Full=Translation initiation factor 2 subunit alpha;
           AltName: Full=aIF2-alpha; AltName: Full=eIF-2-alpha
 gi|116062369|dbj|BAA79394.2| translation initiation factor 2 alpha subunit [Aeropyrum pernix K1]
          Length = 277

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            +P+V +I  G V +V D+GA++     G     +  S++++  V     V+K    V V
Sbjct: 17  PLPDVGEIVVGTVQEVHDYGAYLILDEYGGVRAFLPWSEIASRAVRNIHAVLKPRQKVVV 76

Query: 673 KLLDF-DDRGKIKLSMKVVDQNTGK 696
           K++     RG++ +S+K V  +  K
Sbjct: 77  KVIRVYKKRGQVDVSLKRVMDSEKK 101


>gi|289168352|ref|YP_003446621.1| predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus mitis B6]
 gi|307706205|ref|ZP_07643022.1| general stress protein 13 [Streptococcus mitis SK321]
 gi|288907919|emb|CBJ22759.1| predicted RNA binding protein (contains ribosomal protein S1
           domain) [Streptococcus mitis B6]
 gi|307618395|gb|EFN97545.1| general stress protein 13 [Streptococcus mitis SK321]
          Length = 120

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++ T  +    + +K  + V V+++D
Sbjct: 1   MKIGDKLKGRITGIQPYGAFVELETGDTGLIHISEIRTGFIENIQEALKVDEEVQVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
            D+  GK  LS++ +++ 
Sbjct: 61  LDEFTGKASLSIRTLEEE 78


>gi|284161627|ref|YP_003400250.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011624|gb|ADB57577.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
          Length = 281

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ-LSTERVAKTSDVVKEGDTVWVK 673
            VP +     G V +V   G  V         + + +  +     K ++V+  GD +  K
Sbjct: 57  YVPSLGDTVIGIVKEVTANGWIVDILSPYVAFLPVQENPAMRPNKKPNEVLDIGDAIIAK 116

Query: 674 LLDFDDRGKIKLSMKV 689
           +++ D + ++ L+MK 
Sbjct: 117 VMNIDPKMRVTLTMKD 132


>gi|302348003|ref|YP_003815641.1| Translation initiation factor 2 subunit alpha [Acidilobus
           saccharovorans 345-15]
 gi|302328415|gb|ADL18610.1| Translation initiation factor 2 subunit alpha [Acidilobus
           saccharovorans 345-15]
          Length = 269

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            +P+V ++  G V ++ D+GA++           +   ++S+       DV+K  + V V
Sbjct: 8   QLPDVGEVVVGTVKELHDYGAYLELDEFNGLRAFLPWVEVSSRSFKSIDDVIKVNERVAV 67

Query: 673 KLLDFDD-RGKIKLSMKVVDQNTGK 696
           K++  +  +G++ +S+K V  +  +
Sbjct: 68  KVIRVNRAKGQVDVSLKKVTDDERR 92


>gi|317497036|ref|ZP_07955364.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895696|gb|EFV17850.1| S1 RNA binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 596

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 12/103 (11%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAK-VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
            ++   +G+G   ++ IV++      +  +D    I  + + E++  +  ++        
Sbjct: 482 KKLSEELGIGEITLKDIVKELEKPGRDPREDLPKPILRTDVLEMKDLKPGMK-------- 533

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
               KG V  V+DFGAFV     +DGLVHISQ++   +    +
Sbjct: 534 ---LKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFIKHPLE 573


>gi|323342951|ref|ZP_08083182.1| YhgF like protein [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463015|gb|EFY08210.1| YhgF like protein [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 726

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
           ++     G V  V+DFGAFV     +DGLVHIS+LS + V   +D
Sbjct: 648 KLGMELNGTVRNVVDFGAFVDIGVKQDGLVHISKLSDQFVKHPTD 692


>gi|289192398|ref|YP_003458339.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
 gi|288938848|gb|ADC69603.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
          Length = 187

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 529 LHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID 588
           ++ + E++ V+     + G+         I  ++    +      I  I       V++ 
Sbjct: 1   MYKILEIADVVKVPPEEFGKDLKETVK-KILMEKYEGRLDKDIGFILSI-------VDVK 52

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVH 648
           D G  K+     +       +  ++  +PE+ ++ +G+VV V++FG+FV      DGL+H
Sbjct: 53  DIGNGKVVHGDGSAYH--PVVFETLVYMPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIH 109

Query: 649 ISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD-----DRG-KIKLSMKV 689
           +SQ+  + V            +T  V++ GD V  +++         RG KI L+M+ 
Sbjct: 110 VSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKIALTMRQ 167


>gi|123464254|ref|XP_001317083.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
 gi|121899808|gb|EAY04860.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
          Length = 203

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 25/214 (11%)

Query: 320 ETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYN 379
           E  R+I+ + GL   + GSS    G T+ IV   +G ++                +   +
Sbjct: 11  EEEREIACEKGLCISSQGSSRVRVGKTEVIVN-IVGPKQMVFR----EIETGKVNIKAKS 65

Query: 380 FLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMA 439
           +    T                 ++   AI   L   A     L +   I   DG     
Sbjct: 66  YPENPT---------------INKIVADAIENSLKCDAYPDSNLEVSVTIVCDDGGLKAC 110

Query: 440 TVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
            V  + LAL+DAG  ++  +A     L   GD  +   + S +E + G   F        
Sbjct: 111 AVNATILALVDAGFEMNHLLAA--SSLAVKGDILVNDPNASEEELYDGAATFVYEIDSQK 168

Query: 500 ITAMQMDMKIGGISENIMVM---ALQQAKRGRLH 530
           I +   +  I      I++    A  Q    R+ 
Sbjct: 169 IISTFFEGYIQPRMLPILMKRATANSQEWEERIK 202


>gi|311894086|dbj|BAJ26494.1| hypothetical protein KSE_06540 [Kitasatospora setae KM-6054]
          Length = 194

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARD-------GLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            I  G V  +  FG FV              G + I +LS   +   +DVV+ G  V  +
Sbjct: 21  DIVSGTVAAIERFGVFVTLDDGPAHPTFPGVGFITIPELSWRHIDAVTDVVQVGRRVSCE 80

Query: 674 LLDFDDRG-KIKLSMKVVDQNT 694
            L FD    + +LS+K ++ + 
Sbjct: 81  FLQFDTHNAEARLSLKALEPDP 102



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +R+  D     +  +G V KV+ FG FV+      GLV   ++         +  + G
Sbjct: 101 DPLRAFADHTAAGQELRGTVGKVLPFGIFVNLGDGIVGLVPFREVHGRAAVSPVEDFEAG 160

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           + + V + + +    ++ LS 
Sbjct: 161 EEIAVIVTEIELPTRRVFLSR 181


>gi|302786996|ref|XP_002975268.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
 gi|300156842|gb|EFJ23469.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
          Length = 366

 Score = 51.8 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 15/137 (10%)

Query: 568 GMGGKVIRGIVEQTGAKV----NIDDDGTVKIASSSLAEIEAAREMIRSITDVP----EV 619
           G+G   ++G  E  G       N+ + G   + + SL      + +  S    P      
Sbjct: 135 GVGRHTVQGRWESFGKVHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPP 194

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDG------LVHISQLSTERVAKTSDVVKEGDTVWVK 673
            K+  G+++ +      +    A         L H+S++S + +   S + K G  V VK
Sbjct: 195 GKVISGRILSIEPLSGHIEMSLAATTSQDSSCLCHVSEVSYDFIQDLSTLYKVGQWVQVK 254

Query: 674 LLDFD-DRGKIKLSMKV 689
           +L  D +  +I L MK 
Sbjct: 255 ILKVDAETKRISLRMKA 271


>gi|295398254|ref|ZP_06808299.1| ribonuclease R [Aerococcus viridans ATCC 11563]
 gi|294973513|gb|EFG49295.1| ribonuclease R [Aerococcus viridans ATCC 11563]
          Length = 838

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 11/134 (8%)

Query: 560 PDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEV 619
             ++ +      +      E+   K++   + + K+   S+        + ++   + ++
Sbjct: 581 VHRLIHFYESHARPNADKQEKMKMKLSDIAEHSSKMERRSVDAERETDSLKKTEFMLDKI 640

Query: 620 NKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV-----------KEGD 668
              ++G +  V  FG FV      +GLVHIS L  +        +           + GD
Sbjct: 641 GMEFEGIISSVTGFGLFVELPNTVEGLVHISMLKDDYYNFVDSQLVLIGENTGKTYRIGD 700

Query: 669 TVWVKLLDFDDRGK 682
            V VK++D +   +
Sbjct: 701 RVTVKVMDVNTDTR 714


>gi|312109557|ref|YP_003987873.1| ribonuclease R [Geobacillus sp. Y4.1MC1]
 gi|311214658|gb|ADP73262.1| ribonuclease R [Geobacillus sp. Y4.1MC1]
          Length = 761

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       ++ ++     ++   + G +  V +FG FV      +GLVH+S L+
Sbjct: 601 NMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT 660

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
            +              +T  V + GD + V++++ +   +I
Sbjct: 661 DDYYHYDERSYAMIGERTGKVYRIGDQITVRVINVNKDERI 701


>gi|194477334|ref|YP_002049513.1| 30S ribosomal protein S1-like B, putative [Paulinella
           chromatophora]
 gi|171192341|gb|ACB43303.1| 30S ribosomal protein S1-like B, putative [Paulinella
           chromatophora]
          Length = 368

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV 664
             R    +     ++ ++ +GQV  V  +G FV   G+ +GL+H S ++   + + + + 
Sbjct: 246 EKRATTATRFAQLQIGQLIEGQVTVVKPYGFFVDI-GSINGLLHYSCITNGNLREPNKIF 304

Query: 665 KEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           K+G+ +   + D D  RG+I L+  +++   G+ ++
Sbjct: 305 KQGERIKALITDLDPTRGRIGLNTALLEGKPGELLI 340


>gi|237666674|ref|ZP_04526659.1| ribonuclease R [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237657873|gb|EEP55428.1| ribonuclease R [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 734

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 23/133 (17%)

Query: 569 MGGKVIRGIVEQTGAKVNIDDDGTVK-----IASSSLAEIEAAREMIRSITDVPE----- 618
              ++ R I E    K++   +  +K      A  S      A++  R + D+ +     
Sbjct: 568 PDLQIHRIIKEYLHGKIDEKRENKLKNIVGHSAKQSSEMERKAQDAEREVDDLKKAEYMQ 627

Query: 619 --VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVV-----------K 665
             + + ++G +  V  FG FV      +GLVHI+ L  +      D +           K
Sbjct: 628 DRIGEEFEGVISSVTSFGVFVELPSTIEGLVHITDLDDDYYIYEEDHLRLIGERTKKIYK 687

Query: 666 EGDTVWVKLLDFD 678
            GD V V+ ++ D
Sbjct: 688 LGDKVLVECVNVD 700


>gi|226941146|ref|YP_002796220.1| transcriptional accessory protein [Laribacter hongkongensis HLHK9]
 gi|226716073|gb|ACO75211.1| probable transcriptional accessory protein [Laribacter
           hongkongensis HLHK9]
          Length = 771

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           ++I  +              AA           +   + +G V  V +FGAFV     +D
Sbjct: 617 MDILRELDKPGRDPRPEFKTAAFADGVEDIKDLQAGMLLEGVVTNVANFGAFVDIGVHQD 676

Query: 645 GLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           GLVHIS LS   V     VVK GD V VK+++ D  R +I L+M++ D 
Sbjct: 677 GLVHISALSKSFVDDPRKVVKAGDVVKVKVVEVDLGRRRIALTMRLDDP 725


>gi|27468083|ref|NP_764720.1| 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
 gi|27315628|gb|AAO04762.1|AE016747_259 30S ribosomal protein S1 [Staphylococcus epidermidis ATCC 12228]
          Length = 240

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERVAKTSDVVKE 666
           E   S+ +  +      G+V +V D    VH  G + +G++ ISQLST  +   S+VVK 
Sbjct: 4   EFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 667 GDTVWVKLLDF-----DDRGKIKLSMKVVD 691
           GD V   +        +D G   LS + ++
Sbjct: 64  GDEVEAYVTKIEFDEENDTGAYILSKRQLE 93



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 545 QLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI------------VEQTGAKVNIDDDGT 592
           ++ +   +  ++ I   +   +I +       I            VE    K+  D++  
Sbjct: 22  EVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTKIEFDEEND 81

Query: 593 VKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
                 S  ++E  +     + +  + +++ + +V +V+  G  V     + G V  S +
Sbjct: 82  TGAYILSKRQLETEKS-YEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--GQRGFVPASLI 138

Query: 653 STERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQ 692
           ST+ +   S  V +G T+ +K+ + D +  ++ LS K V+Q
Sbjct: 139 STDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQ 177



 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D I +     G+ IR  VE+      +D +    I S    E         SI D  
Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQLENDAKKASILDSL 191

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
               +  G+V ++ +FGAF++  G  DGLVH+S+LS 
Sbjct: 192 NEGDVIDGKVARLTNFGAFINI-GGVDGLVHVSELSH 227


>gi|309777282|ref|ZP_07672244.1| ribonuclease R [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914962|gb|EFP60740.1| ribonuclease R [Erysipelotrichaceae bacterium 3_1_53]
          Length = 692

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 588 DDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLV 647
           + +     A   + +++ A+ M R       V + + G V  +  FG FV      +GLV
Sbjct: 574 ERERNAVDAEREVDDMKKAQYMERY------VGQSFDGVVSGITKFGMFVELDNTVEGLV 627

Query: 648 HISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
           H++ L  +               T+ V K G  V VK    D   +
Sbjct: 628 HVTTLDDDFYHYDEMTKSLIGEHTAKVYKMGQKVRVKCTGADRFKR 673


>gi|302783372|ref|XP_002973459.1| hypothetical protein SELMODRAFT_267638 [Selaginella moellendorffii]
 gi|300159212|gb|EFJ25833.1| hypothetical protein SELMODRAFT_267638 [Selaginella moellendorffii]
          Length = 337

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEG 667
                  PEV+ +   QV  + + GA+V        +G++ +S+LS  R+     ++K G
Sbjct: 8   RMYEARFPEVDDVVMVQVKHIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIGSLIKVG 67

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
               V +L  D ++G I LS + V + 
Sbjct: 68  RQEPVMVLRVDKEKGYIDLSKRRVSEE 94


>gi|330685646|gb|EGG97288.1| ribonuclease R [Staphylococcus epidermidis VCU121]
          Length = 791

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S ++ +              + + V + GD V VK+   D   ++
Sbjct: 661 SNMTDDYYQFDERQMTLIGERQAKVFRIGDAVKVKVTHVDVDERM 705


>gi|325282032|ref|YP_004254574.1| Tex-like protein [Odoribacter splanchnicus DSM 20712]
 gi|324313841|gb|ADY34394.1| Tex-like protein [Odoribacter splanchnicus DSM 20712]
          Length = 714

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 19/195 (9%)

Query: 513 SENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGK 572
           S   +    +   +        +    + + L      P    +    +++   +G+G  
Sbjct: 520 SREELKKVKRMGAKAFEQSAGFLRIEGAGNPLDNSAVHPESYYI---VEKMARDLGVGVH 576

Query: 573 VI---RGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDV------------P 617
            +     +  +   +  +D+   +      +AE+       R++  V             
Sbjct: 577 ELIGNETLCGRIEPQRYVDEKTGLLTLKDIVAELRKPGRDPRTMAKVFSFAEGISKIEDL 636

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V  +  G V  +  FGAFV     +DGLVHIS+++   V   +  +     V VK++  
Sbjct: 637 QVGMVIPGIVTNITGFGAFVDVGVKQDGLVHISEIADRYVTDPAAELVLNQQVMVKVVQV 696

Query: 678 DD-RGKIKLSMKVVD 691
           +  R +I LS++   
Sbjct: 697 EPGRKRIGLSIRQAQ 711


>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
 gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
          Length = 276

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 95/281 (33%), Gaps = 41/281 (14%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
           +  F+ I         L + VR DGR     R  +   G +    GSS    G+T  +  
Sbjct: 1   MEAFQKIHPLEFYRKFLIRSVRPDGRSLNDTRKTTISTGSVTTADGSSFVKIGNTSVVCG 60

Query: 352 V--TLG--TREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARR 407
           V   +G     D+  + S++  + ++  ++    P  +   S             RL   
Sbjct: 61  VRAEVGEKPSTDKSKLQSINNHENSNIFINIELGPICSNTFSSTKPSDMAMTLCSRLNSL 120

Query: 408 AIHPVLPQTAQFPYT---------LRIVSEITESDGSSSMATVCGSSLALMDAGVP---- 454
                +P T  +            + I     + DG+   A V     AL +  +P    
Sbjct: 121 INRLEIPDTDFYFDEEGKALWYLYVDIYC--LDYDGNIYDAAVLSILSALKNVKLPKGII 178

Query: 455 ------------------ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGT 496
                             I   +   +  +++D     ILSD S +E+ L      +   
Sbjct: 179 ENNDEYYKDLEQPLRELNIKHYLIPTSFSVIED----YILSDPSLEEEKLSTGTINITYN 234

Query: 497 DSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSK 537
           +     + +   I  ISE+ +   +++AK    +I+N ++ 
Sbjct: 235 EHKEICLLLVTGINSISESNLKECMKKAKDRCQYIINLINT 275


>gi|313893262|ref|ZP_07826837.1| ribonuclease R [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442158|gb|EFR60575.1| ribonuclease R [Veillonella sp. oral taxon 158 str. F0412]
          Length = 787

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 75/213 (35%), Gaps = 23/213 (10%)

Query: 502 AMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEF----TPRVEIMA 557
            +  D       + I+ +   Q       I+   S   ++  ++        +       
Sbjct: 489 VLSADGVTPRDFQKILDVVKGQDIEQVAQIMTLRSMQQAKYSIENAGHFGLASTCYTHFT 548

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-------DGTVKIASSSLAEIEAAREMI 610
            P  +  +++           +   +K +++D       + +      +        ++ 
Sbjct: 549 SPIRRYPDLMVHRLLKADMHWKNGYSKRDVEDAFLAGAVEHSSIQEQVATEAERETIDLK 608

Query: 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AK 659
           ++   VP V ++++G++  +  FG FV      DGLVHIS ++ +              +
Sbjct: 609 KTQYMVPFVGEVFEGRIASITSFGMFVELENGIDGLVHISMMNDDYYFFDEEHFVLVGKR 668

Query: 660 TSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
           T      GD V V L+  D ++ +I   +  VD
Sbjct: 669 TGKTYHLGDKVTVTLVKADVEKKQIDFVLGEVD 701


>gi|269101014|ref|YP_003289162.1| 30S ribosomal protein S1 [Ectocarpus siliculosus]
 gi|266631522|emb|CAV31193.1| Chloroplast 30S ribosomal protein S1 [Ectocarpus siliculosus]
 gi|270118652|emb|CAT18703.1| Chloroplast 30S ribosomal protein S1 [Ectocarpus siliculosus]
          Length = 265

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE--RVAKTSDVVKEGDTVWVKLLDFD-D 679
           Y   V  +  FG FV+  G  + L+HIS++  +  +    S + K GD + ++++  D +
Sbjct: 197 YLANVTSIKYFGVFVNILG-VNCLLHISEIFKKTTQTENLSSLYKLGDQIKLRIVSKDIE 255

Query: 680 RGKIK 684
           RG++ 
Sbjct: 256 RGRVS 260


>gi|303281650|ref|XP_003060117.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458772|gb|EEH56069.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 333

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV+++   QV  + + GA+V        +G++ +S+L+  R+   S ++K G    V +
Sbjct: 13  PEVDQVVMVQVKSIAEMGAYVQLLEYDNIEGMILLSELTRRRIRSVSKLIKVGRVEPVMV 72

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L  D ++G I LS + V   
Sbjct: 73  LRVDQEKGYIDLSKRRVSPE 92


>gi|239636605|ref|ZP_04677607.1| ribonuclease R [Staphylococcus warneri L37603]
 gi|239597960|gb|EEQ80455.1| ribonuclease R [Staphylococcus warneri L37603]
          Length = 791

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S ++ +              + + V + GD V VK+   D   ++
Sbjct: 661 SNMTDDYYQFDERQMALIGERQAKVFRIGDAVKVKVTHVDVDERM 705


>gi|330794746|ref|XP_003285438.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
 gi|325084613|gb|EGC38037.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
          Length = 812

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 602 EIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
                 E      +  E   I  G +  + +    +    +  G+V  + L+   +  TS
Sbjct: 531 ARTRELEKKFFSYNDIECGMITTGIIKYIREESVEIELAPSIHGVVPKTHLADVAITNTS 590

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
              K G TV V+++  D D+ +++L++K     +  PI+
Sbjct: 591 TFFKLGSTVKVRVISVDPDKKRLQLTLKKSLIQSEYPII 629


>gi|14521883|ref|NP_127359.1| DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
 gi|5459103|emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit E' [Pyrococcus abyssi
           GE5]
          Length = 188

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 18/93 (19%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
              P+  ++ +G VV  + FGAFV      DGLVHISQL  + V            +   
Sbjct: 76  VWEPKQQEVVEGTVVDAVPFGAFVRIGPM-DGLVHISQLMDDYVVYDERNKQFVGKEKKY 134

Query: 663 VVKEGDTVWVKLLDFDDR------GKIKLSMKV 689
           ++K GD V  +++    +       +I L+M+ 
Sbjct: 135 LLKIGDAVRARIITVSAKSRIIRENRIGLTMRQ 167


>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
           boonei T469]
 gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
           boonei T469]
          Length = 226

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSL 366
           +  K  R+DGR  + +R+++   G + R  GS+L   G+T+ +V V +       + D+ 
Sbjct: 22  LASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP--FPDT- 78

Query: 367 SGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRA--------IHPVLPQTAQ 418
                     +    P A+      G P    I   R+  R         +  ++ +  +
Sbjct: 79  --PNMGILTTNAELAPLASPTFEP-GPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGE 135

Query: 419 FPYTLRIVSEITESDGS 435
             + + I   + + DG+
Sbjct: 136 KVWIVFIDIHVLDYDGN 152



 Score = 39.5 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73
           R L +  G I R ++G+ L   G T VL  V     ++ G  F P T N    T      
Sbjct: 38  RNLTVTKGYIPR-AEGSALVNLGNTRVLVGV----KIEPGTPF-PDTPNMGILTTNAELA 91

Query: 74  PGGYLRRESRPT-ENEILISRMIDRSIRPL----FSKCYKNE------TQVIINVMQHDL 122
           P      E  P  E  I ++R++DR IR        K    E        + I+V+ +D 
Sbjct: 92  PLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVFIDIHVLDYDG 151

Query: 123 E 123
            
Sbjct: 152 N 152


>gi|145347531|ref|XP_001418217.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578446|gb|ABO96510.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 258

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 24/100 (24%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARD-GLVHISQLSTERVAKTSDVVKEGDTVWVKLL-D 676
           ++K+Y+G+   V   G FV   G R  GLVH +Q+S + +    DV    D   ++++  
Sbjct: 2   LHKVYRGKARTVKPVGVFVDIRGFRRGGLVHRTQIS-QYLDVPRDV---DDEEKIRVISG 57

Query: 677 FDDRG------------------KIKLSMKVVDQNTGKPI 698
               G                  ++ LSMK VDQ  G+ +
Sbjct: 58  VVAEGDDVWVKVVDVETTDGAPPRVSLSMKNVDQGNGEDL 97


>gi|304314475|ref|YP_003849622.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587934|gb|ADL58309.1| predicted DNA-directed RNA polymerase subunit E'
           [Methanothermobacter marburgensis str. Marburg]
          Length = 184

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 19/120 (15%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            I+D G  K+     A          ++   PE+++I +G+V+++ +FGAFV      DG
Sbjct: 50  EIEDIGIGKVIMGDGAAYHE--VTFTALFFKPELHEIVEGEVIEIAEFGAFVRIGP-VDG 106

Query: 646 LVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK-----IKLSMKV 689
           LVH+SQ++ + +            +T   + EGD V  +++    +G+     + L+M+ 
Sbjct: 107 LVHVSQVTDDYITYDAKKGSLTGKETGKRLDEGDLVRARIVALSLKGRREGVKVGLTMRQ 166


>gi|302698227|ref|XP_003038792.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
 gi|300112489|gb|EFJ03890.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
          Length = 1461

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           E         +  +I KG + K+ D   FV   G  DG+V  +  +   + +     K G
Sbjct: 508 EQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNHYADIALKQPGKRFKAG 567

Query: 668 DTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
            ++  ++L  D+ R +I L+ K    ++  P++
Sbjct: 568 ASIKCRVLVVDEGRKRISLTAKKTLIDSTLPVL 600



 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 561 DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTV---KIASSSLAEIEAAREMIRSITDVP 617
           D   +V G     +  +V+     ++ ++   +   + +  S     + R+         
Sbjct: 830 DDFNHVKGQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDL 889

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            V +  +G +  V D G FV      D  V I +L  + V +     K    V  ++L  
Sbjct: 890 HVGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQV 949

Query: 678 D-DRGKI 683
           D +  KI
Sbjct: 950 DAESKKI 956


>gi|255083120|ref|XP_002504546.1| predicted protein [Micromonas sp. RCC299]
 gi|226519814|gb|ACO65804.1| predicted protein [Micromonas sp. RCC299]
          Length = 316

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV+++   QV  + + GA+V        +G++ +S+L+  R+   S ++K G    V +
Sbjct: 7   PEVDEVVMVQVKSIAEMGAYVQLLEYNNIEGMILLSELTRRRIRSVSKLIKVGRVEPVMV 66

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L  D ++G I LS + V   
Sbjct: 67  LRVDKEKGYIDLSKRRVSPE 86


>gi|161527589|ref|YP_001581415.1| RNA-binding S1 domain-containing protein [Nitrosopumilus maritimus
           SCM1]
 gi|160338890|gb|ABX11977.1| RNA binding S1 domain protein [Nitrosopumilus maritimus SCM1]
          Length = 265

 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M   I ++PE  +I    V KVMD GA+V         G +HIS+++   +   +  VK+
Sbjct: 1   MSTEIQEMPEQGEIVLATVTKVMDHGAYVTLDEYDNLQGFLHISEIAPGWIRSVNRFVKD 60

Query: 667 GDTVWVKLLDFDD-RGKIKLSMKVVDQN 693
           G+   + +   +  RG I LS+K V ++
Sbjct: 61  GEKKVLLVKKVNPQRGDIDLSLKQVSKD 88


>gi|82750488|ref|YP_416229.1| ribonuclease R [Staphylococcus aureus RF122]
 gi|82656019|emb|CAI80424.1| ribonuclease R [Staphylococcus aureus RF122]
          Length = 790

 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTNDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|302823897|ref|XP_002993596.1| hypothetical protein SELMODRAFT_270064 [Selaginella moellendorffii]
 gi|300138524|gb|EFJ05288.1| hypothetical protein SELMODRAFT_270064 [Selaginella moellendorffii]
          Length = 337

 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEG 667
                  PEV+ +   QV  + + GA+V        +G++ +S+LS  R+     ++K G
Sbjct: 8   RMYEARFPEVDDVVMVQVKHIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIGSLIKVG 67

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQN 693
               V +L  D ++G I LS + V + 
Sbjct: 68  RQEPVMVLRVDKEKGYIDLSKRRVSEE 94


>gi|167044420|gb|ABZ09096.1| putative S1 RNA binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG6D9]
          Length = 264

 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKE 666
           M   I ++PE  +I    V KVMD GA+V         G +HIS+++   +   S  VK+
Sbjct: 1   MSTEIQEMPEQGEIILATVTKVMDHGAYVTLDEYDEIQGFLHISEIAPGWIRSISRFVKD 60

Query: 667 GDT--VWVKLLDFDDRGKIKLSMKVVDQN 693
           G+   + VK ++   RG I LS+K V ++
Sbjct: 61  GEKKVLLVKKVNI-KRGDIDLSLKQVSKD 88


>gi|73663216|ref|YP_301997.1| exoribonuclease [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72495731|dbj|BAE19052.1| exoribonuclease [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 796

 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   V  + + ++G +  V +FG F+      +G+VH+
Sbjct: 602 EHTSQRERRAIEAERDTDELKKAEYMVQHIGEEFEGIISSVANFGMFIELPNTIEGMVHV 661

Query: 650 SQL-------STERVAKTSD----VVKEGDTVWVKLLDFDDRGKI 683
           S +          ++A   +    V + GD V +K+++ D   ++
Sbjct: 662 SNMTDDYYHFDERQMAMIGERQAKVFRIGDPVQIKVINVDVDERM 706


>gi|223042750|ref|ZP_03612798.1| ribonuclease R [Staphylococcus capitis SK14]
 gi|222443604|gb|EEE49701.1| ribonuclease R [Staphylococcus capitis SK14]
          Length = 792

 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           + ++ +              + + V + GD V VK+   D   ++
Sbjct: 661 ANMTDDYYNFDERQMALIGERQAKVFRIGDEVKVKVTHVDVDERM 705


>gi|307202796|gb|EFN82079.1| S1 RNA-binding domain-containing protein 1 [Harpegnathos saltator]
          Length = 826

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
               G +  V  FG FV      +GL+HI  L  +        ++ G  V VK+L     
Sbjct: 761 TTLNGIIRNVTHFGVFVDIGVGTNGLIHIKYLKNQ-------SLRIGQYVTVKVLSVKQD 813

Query: 681 -GKIKLS-MKVV 690
             +I L  MK++
Sbjct: 814 CNRISLELMKIL 825


>gi|298694116|gb|ADI97338.1| ribonuclease R [Staphylococcus aureus subsp. aureus ED133]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|322368923|ref|ZP_08043490.1| hypothetical protein ZOD2009_05537 [Haladaptatus paucihalophilus
           DX253]
 gi|320551654|gb|EFW93301.1| hypothetical protein ZOD2009_05537 [Haladaptatus paucihalophilus
           DX253]
          Length = 698

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           YKG V    DFG F+       GL+H S+L   R+        +GDTV+V+++   D G 
Sbjct: 41  YKGTVDGFADFGVFIDIGNHVTGLLHKSELD-RRLESLD--WDQGDTVYVEVIGVRDNGN 97

Query: 683 IKLS 686
           + LS
Sbjct: 98  VDLS 101


>gi|283470075|emb|CAQ49286.1| ribonuclease R [Staphylococcus aureus subsp. aureus ST398]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|253317246|ref|ZP_04840459.1| ribonuclease R [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|57650122|ref|YP_185720.1| VacB/RNase II family exoribonuclease [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161515|ref|YP_493465.1| ribonuclease R [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194563|ref|YP_499359.1| ribonuclease R [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151220961|ref|YP_001331783.1| ribonuclease R [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509051|ref|YP_001574710.1| ribonuclease R [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142195|ref|ZP_03566688.1| ribonuclease R [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452172|ref|ZP_05700188.1| ribonuclease R [Staphylococcus aureus A5948]
 gi|262050046|ref|ZP_06022903.1| ribonuclease R [Staphylococcus aureus D30]
 gi|284023803|ref|ZP_06378201.1| ribonuclease R [Staphylococcus aureus subsp. aureus 132]
 gi|294850509|ref|ZP_06791238.1| ribonuclease R [Staphylococcus aureus A9754]
 gi|304381596|ref|ZP_07364246.1| ribonuclease R [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284308|gb|AAW36402.1| exoribonuclease, VacB/RNase II family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127489|gb|ABD22003.1| ribonuclease R [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202121|gb|ABD29931.1| ribonuclease R, putative [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373761|dbj|BAF67021.1| ribonuclease R [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160367860|gb|ABX28831.1| exoribonuclease R [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860387|gb|EEV83219.1| ribonuclease R [Staphylococcus aureus A5948]
 gi|259161842|gb|EEW46427.1| ribonuclease R [Staphylococcus aureus D30]
 gi|269940357|emb|CBI48734.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus TW20]
 gi|294822647|gb|EFG39087.1| ribonuclease R [Staphylococcus aureus A9754]
 gi|302750677|gb|ADL64854.1| exoribonuclease, VacB/RNase II family [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339959|gb|EFM05903.1| ribonuclease R [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196259|gb|EFU26613.1| exoribonuclease R [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139883|gb|EFW31744.1| ribonuclease R [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142026|gb|EFW33854.1| ribonuclease R [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313501|gb|AEB87914.1| Ribonuclease R [Staphylococcus aureus subsp. aureus T0131]
 gi|329723811|gb|EGG60339.1| ribonuclease R [Staphylococcus aureus subsp. aureus 21189]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|319401141|gb|EFV89356.1| ribonuclease R [Staphylococcus epidermidis FRI909]
          Length = 792

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           + ++ +              + + V + GD V VK+   D   ++
Sbjct: 661 ANMTDDYYHFDERQMALIGERQAKVFRIGDEVKVKVTHVDVEERM 705


>gi|315125635|ref|YP_004067638.1| RNase R, 3'-5' exoribonuclease [Pseudoalteromonas sp. SM9913]
 gi|315014148|gb|ADT67486.1| RNase R, 3'-5' exoribonuclease [Pseudoalteromonas sp. SM9913]
          Length = 819

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           I+ V+   G+   G    +  +V+   +        +        + ++       V   
Sbjct: 583 IKAVLKAQGQQTSGEYAYSDDEVDQLGEQCSTTERRADDATREVADWLKCEYMQDHVGME 642

Query: 623 YKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERV-----------AKTSDVVKEGDTV 670
           + G +  V +FG F+     + DGL+H++ L  E               T  V + GD V
Sbjct: 643 FNGVISSVTNFGLFIRLDDLQIDGLIHVTNLGDEYFQHDAAKHCLVGEHTHTVYRLGDKV 702

Query: 671 WVKLLDF--DDRGKIKLSMK-VVDQN 693
            V++     DDR +I L++K  V Q+
Sbjct: 703 TVQVASVSLDDR-RINLTLKGDVAQD 727


>gi|70727106|ref|YP_254020.1| ribonuclease R [Staphylococcus haemolyticus JCSC1435]
 gi|68447830|dbj|BAE05414.1| ribonuclease R [Staphylococcus haemolyticus JCSC1435]
          Length = 792

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 602 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 661

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           S ++ +              + + V + GD V VK+   D   ++
Sbjct: 662 SNMTDDYYQFDERQMALIGERQAKVFRIGDQVTVKVTHVDVDERM 706


>gi|294788518|ref|ZP_06753760.1| ribonuclease R [Simonsiella muelleri ATCC 29453]
 gi|294483395|gb|EFG31080.1| ribonuclease R [Simonsiella muelleri ATCC 29453]
          Length = 837

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 592 TVKIASSSLAEIEAAREMI-RSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHI 649
                     E     E   ++     +V  ++ G++ ++ +FG FV       DG++H+
Sbjct: 611 HCSFCERRADEASRDVENWLKTYFMRDKVGDVFGGKISRITNFGVFVTLDDVHIDGMIHV 670

Query: 650 SQLSTERVAKTSDV-----------VKEGDTVWVKLLDFD-DRGKIKL 685
           S+L  +      D+              GD V VK+   D +  +I L
Sbjct: 671 SELGEDYFQYREDLMAMIGERSGVRFDVGDRVQVKVARADLETSRIDL 718


>gi|62484314|ref|NP_651070.3| CG31156 [Drosophila melanogaster]
 gi|16768960|gb|AAL28699.1| LD12377p [Drosophila melanogaster]
 gi|61679372|gb|AAF56028.3| CG31156 [Drosophila melanogaster]
 gi|220950410|gb|ACL87748.1| CG31156-PA [synthetic construct]
          Length = 948

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G V  V  FGAFV     R+GL+H S ++  +       +  GD +   ++  D
Sbjct: 869 MGEVVTGAVTNVTQFGAFVDVGVERNGLIHNSNMNNSQ-------LSVGDRIVASVVKVD 921

Query: 679 DRGK 682
            + +
Sbjct: 922 LKRR 925


>gi|15926457|ref|NP_373990.1| ribonuclease R [Staphylococcus aureus subsp. aureus N315]
 gi|57634620|ref|NP_371304.2| ribonuclease R [Staphylococcus aureus subsp. aureus Mu50]
 gi|148267240|ref|YP_001246183.1| ribonuclease R [Staphylococcus aureus subsp. aureus JH9]
 gi|150393289|ref|YP_001315964.1| ribonuclease R [Staphylococcus aureus subsp. aureus JH1]
 gi|156979108|ref|YP_001441367.1| ribonuclease R [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005571|ref|ZP_05144172.2| ribonuclease R [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794898|ref|ZP_05643877.1| ribonuclease R [Staphylococcus aureus A9781]
 gi|258418215|ref|ZP_05682480.1| ribonuclease R [Staphylococcus aureus A9763]
 gi|258421512|ref|ZP_05684437.1| ribonuclease R [Staphylococcus aureus A9719]
 gi|258439145|ref|ZP_05690189.1| ribonuclease R [Staphylococcus aureus A9299]
 gi|258440927|ref|ZP_05690762.1| ribonuclease R [Staphylococcus aureus A8115]
 gi|258445757|ref|ZP_05693934.1| ribonuclease R [Staphylococcus aureus A6300]
 gi|258449569|ref|ZP_05697671.1| ribonuclease R [Staphylococcus aureus A6224]
 gi|258453969|ref|ZP_05701941.1| ribonuclease R [Staphylococcus aureus A5937]
 gi|269202403|ref|YP_003281672.1| VacB/RNase II family exoribonuclease [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895076|ref|ZP_06303297.1| ribonuclease R [Staphylococcus aureus A8117]
 gi|282926648|ref|ZP_06334278.1| ribonuclease R [Staphylococcus aureus A10102]
 gi|295406504|ref|ZP_06816310.1| ribonuclease R [Staphylococcus aureus A8819]
 gi|296276295|ref|ZP_06858802.1| VacB/RNase II family exoribonuclease [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245230|ref|ZP_06929104.1| ribonuclease R [Staphylococcus aureus A8796]
 gi|13700671|dbj|BAB41968.1| ribonuclease R [Staphylococcus aureus subsp. aureus N315]
 gi|32170258|emb|CAD91929.1| ribonuclease R [Staphylococcus aureus]
 gi|32170260|emb|CAD91930.1| ribonuclease R [Staphylococcus aureus]
 gi|32170262|emb|CAD91931.1| ribonuclease R [Staphylococcus aureus]
 gi|32170264|emb|CAD91932.1| ribonuclease R [Staphylococcus aureus]
 gi|32170266|emb|CAD91933.1| ribonuclease R [Staphylococcus aureus]
 gi|32170268|emb|CAD91934.1| ribonuclease R [Staphylococcus aureus]
 gi|32170270|emb|CAD91935.1| ribonuclease R [Staphylococcus aureus]
 gi|32170272|emb|CAD91936.1| ribonuclease R [Staphylococcus aureus]
 gi|32170274|emb|CAD91937.1| ribonuclease R [Staphylococcus aureus]
 gi|32170276|emb|CAD91938.1| ribonuclease R [Staphylococcus aureus]
 gi|32170278|emb|CAD91939.1| ribonuclease R [Staphylococcus aureus]
 gi|32170280|emb|CAD91940.1| ribonuclease R [Staphylococcus aureus]
 gi|32170282|emb|CAD91941.1| ribonuclease R [Staphylococcus aureus]
 gi|32170284|emb|CAD91942.1| ribonuclease R [Staphylococcus aureus]
 gi|32170286|emb|CAD91943.1| ribonuclease R [Staphylococcus aureus]
 gi|32170288|emb|CAD91944.1| ribonuclease R [Staphylococcus aureus]
 gi|32170290|emb|CAD91945.1| ribonuclease R [Staphylococcus aureus]
 gi|32170292|emb|CAD91946.1| ribonuclease R [Staphylococcus aureus]
 gi|32170294|emb|CAD91947.1| ribonuclease R [Staphylococcus aureus]
 gi|32170320|emb|CAD91960.1| ribonuclease R [Staphylococcus aureus]
 gi|46395522|dbj|BAB56942.2| ribonuclease R [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740309|gb|ABQ48607.1| RNAse R [Staphylococcus aureus subsp. aureus JH9]
 gi|149945741|gb|ABR51677.1| ribonuclease R [Staphylococcus aureus subsp. aureus JH1]
 gi|156721243|dbj|BAF77660.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788870|gb|EEV27210.1| ribonuclease R [Staphylococcus aureus A9781]
 gi|257839008|gb|EEV63487.1| ribonuclease R [Staphylococcus aureus A9763]
 gi|257842438|gb|EEV66862.1| ribonuclease R [Staphylococcus aureus A9719]
 gi|257847717|gb|EEV71714.1| ribonuclease R [Staphylococcus aureus A9299]
 gi|257852441|gb|EEV76362.1| ribonuclease R [Staphylococcus aureus A8115]
 gi|257855333|gb|EEV78271.1| ribonuclease R [Staphylococcus aureus A6300]
 gi|257857077|gb|EEV79976.1| ribonuclease R [Staphylococcus aureus A6224]
 gi|257863834|gb|EEV86590.1| ribonuclease R [Staphylococcus aureus A5937]
 gi|262074693|gb|ACY10666.1| VacB/RNase II family exoribonuclease [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282591541|gb|EFB96613.1| ribonuclease R [Staphylococcus aureus A10102]
 gi|282762572|gb|EFC02711.1| ribonuclease R [Staphylococcus aureus A8117]
 gi|285816482|gb|ADC36969.1| 3-to-5 exoribonuclease RNase R [Staphylococcus aureus 04-02981]
 gi|294968649|gb|EFG44672.1| ribonuclease R [Staphylococcus aureus A8819]
 gi|297177901|gb|EFH37150.1| ribonuclease R [Staphylococcus aureus A8796]
 gi|312829272|emb|CBX34114.1| ribonuclease R [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129012|gb|EFT85009.1| hypothetical protein CGSSa03_14418 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724622|gb|EGG61129.1| ribonuclease R [Staphylococcus aureus subsp. aureus 21172]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|323438637|gb|EGA96381.1| ribonuclease R [Staphylococcus aureus O11]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|12322020|gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' partial; 75505-85642
           [Arabidopsis thaliana]
          Length = 1396

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 583 AKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA 642
            K+ + D     +A SS   +    E + S  +  + N +  G V  +++ G FV F G 
Sbjct: 716 DKLLVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGR 775

Query: 643 RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKV 689
             G    S+   +  A  S+    G +V   ++D + ++ +I LS+K 
Sbjct: 776 LTGFAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQ 823



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD-FDDR 680
           +  G + K+   G FV F     G V   +L  E  +    V   G+ V  ++       
Sbjct: 579 VTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGT 638

Query: 681 GKIKLS 686
            +I LS
Sbjct: 639 QRITLS 644



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 621  KIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
             I  G++ K++    G  V       G VH ++++   V    D  +EG  V  K+L+  
Sbjct: 1236 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS 1295

Query: 679  DRGK----IKLSMKV 689
               K    I+LS++ 
Sbjct: 1296 SSSKGTWQIELSLRT 1310



 Score = 41.8 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 606 AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVK 665
           A E         +   + K +V+ V  FGA V F G    +  +  +S   V K     K
Sbjct: 476 AFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFK 535

Query: 666 EGDTVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            G  +  ++L      +I ++ K     +  PI+
Sbjct: 536 VGAELVFRVLGC-KSKRITVTYKKTLVKSKLPIL 568



 Score = 37.6 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLST--------ERVAKTSDVVKEGDTVWVKLLD 676
           G V +V      +   G   GLV  S++S         +      D+   G  V   +L+
Sbjct: 133 GVVTEVNQKDIVISLPGGLRGLVRASEVSDFTDRGIEDDENELLGDIFSVGQLVPCIVLE 192

Query: 677 FDD------RGKIKLSMK 688
            DD      + KI LS++
Sbjct: 193 LDDDKKEAGKRKIWLSLR 210


>gi|50556492|ref|XP_505654.1| YALI0F20240p [Yarrowia lipolytica]
 gi|49651524|emb|CAG78463.1| YALI0F20240p [Yarrowia lipolytica]
          Length = 216

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 22/223 (9%)

Query: 329 VGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEV 388
           + +L    GS+ + +G T  I  VT G  E  +  D  +  Q    +             
Sbjct: 1   MNILNNVDGSAKWEQG-TSVICSVT-GPIETRRRTDEPTLAQVELVI------------R 46

Query: 389 SRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSS------SMATVC 442
             +G  + RE          +   + +       L+IV +I E    +        A + 
Sbjct: 47  PAIGQATTRETLIKDRIYSVLAATVVRNLYPRMLLQIVIQILEQGEGTGYNVLKLAACLN 106

Query: 443 GSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITA 502
              LAL+D+  P++     +A+ +V   D  I+                     ++  T 
Sbjct: 107 AVCLALIDSRTPMTGLFTAVAIAIV--DDKLILHPTRKQVSQSTSTHAVSYFVENNKATG 164

Query: 503 MQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQ 545
           + M    G  +EN +   L+QA R    +  +M + + +   +
Sbjct: 165 LLMCESEGEFTENQLFEVLEQAARACEDVALDMRERIEKGVKE 207



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 25/219 (11%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTEN 87
           DG+     G T V+ +V      +   D   L            ++         + T  
Sbjct: 8   DGSAKWEQG-TSVICSVTGPIETRRRTDEPTL-----------AQVELVIRPAIGQATTR 55

Query: 88  EILISRMIDRSIRPLFSKC--YKNETQVIINVMQHDLESSPHVV----SMVAASAALMLS 141
           E LI   I   +     +    +   Q++I +++    +  +V+     + A   AL+ S
Sbjct: 56  ETLIKDRIYSVLAATVVRNLYPRMLLQIVIQILEQGEGTGYNVLKLAACLNAVCLALIDS 115

Query: 142 GLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSLD------LFVSGTQDAVLMVELEANQL 195
             P  G      +  ++ + +L+P   +   S           +     +LM E E  + 
Sbjct: 116 RTPMTGLFTAVAIAIVDDKLILHPTRKQVSQSTSTHAVSYFVENNKATGLLMCESEG-EF 174

Query: 196 SEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
           +E+ + + +      C+ V   + +  +   KE + ID+
Sbjct: 175 TENQLFEVLEQAARACEDVALDMRERIEKGVKEGLRIDA 213


>gi|158291858|ref|XP_313379.4| AGAP003619-PA [Anopheles gambiae str. PEST]
 gi|157017489|gb|EAA08949.4| AGAP003619-PA [Anopheles gambiae str. PEST]
          Length = 1792

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 634  GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            G  V F    +G +HI  LS + V    + V+ G TV V++   D
Sbjct: 1230 GVRVRFDNGLNGFIHIKNLSDKHVKNPEERVQIGQTVHVRVTKID 1274


>gi|282908171|ref|ZP_06316002.1| ribonuclease R [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327836|gb|EFB58118.1| ribonuclease R [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 471

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 282 EHTSKRERRAIESERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 341

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 342 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 385


>gi|253732770|ref|ZP_04866935.1| exoribonuclease R [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729244|gb|EES97973.1| exoribonuclease R [Staphylococcus aureus subsp. aureus TCH130]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|253731410|ref|ZP_04865575.1| exoribonuclease R [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724860|gb|EES93589.1| exoribonuclease R [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|229543260|ref|ZP_04432320.1| ribonuclease R [Bacillus coagulans 36D1]
 gi|229327680|gb|EEN93355.1| ribonuclease R [Bacillus coagulans 36D1]
          Length = 762

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
           K+   ++       E+ ++     ++ + + G +  V +FG FV      +GLVH+S ++
Sbjct: 605 KMERRAVEAERDTDELKKAEFMEDKIGEEFDGIISSVTNFGMFVELPNTIEGLVHVSYMT 664

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDD 679
            +              +T +V + GD + V++L+ + 
Sbjct: 665 DDYYHYNERQYAMIGERTGNVFRIGDEIRVRVLNVNK 701


>gi|322792864|gb|EFZ16697.1| hypothetical protein SINV_10806 [Solenopsis invicta]
          Length = 882

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  V  FG+FV     R+GL+H++++  +        +  G  V VK++  +
Sbjct: 819 IGTVLSGVVRNVTHFGSFVDVGVGREGLIHVTRMKKD--------LYIGQRVEVKVVAIE 870

Query: 679 -DRGKIKLSM 687
             R +I L +
Sbjct: 871 LARQRISLEL 880


>gi|71681329|gb|AAI00360.1| Srbd1 protein [Mus musculus]
          Length = 611

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVK 673
           +V  +  G+V     FG FV     + GL+ I  ++  +++KT       +  G+ V VK
Sbjct: 533 QVGTVLTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVK 592

Query: 674 LLDFD-DRGKIKLSM 687
           +L+ D  R +I L +
Sbjct: 593 VLNVDIPRSRISLDL 607


>gi|82704550|ref|XP_726601.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482077|gb|EAA18166.1| S1 RNA binding domain, putative [Plasmodium yoelii yoelii]
          Length = 891

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 83/248 (33%), Gaps = 21/248 (8%)

Query: 458 PVAGIAMGLVKDGDDFIILSDISGD---EDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
            V  +  G +   +  + L DI+     E H   M + +           +      +  
Sbjct: 466 YVGKLIFGKIFKIEKNMALVDINYSHYGEIHSDQMPYNITNISD------VFKVNDKLIF 519

Query: 515 NIMVMA---LQQAKRGRLHILNEMSKV---LSESRLQLGEFTPRVEIMAIPPDQIRNVIG 568
            I  M    ++   +    I +    +     +   ++   +     + +  + I   I 
Sbjct: 520 EIYKMYPNRIELTLKNIQKINDLNKILLYKTQDIPFEVTVLSIIKNGITVSYNDIYTFIH 579

Query: 569 MGGKVIRG-IVEQTGAKVN---IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYK 624
           +     +  ++      ++   ++    V     +                   +  +  
Sbjct: 580 ISAISSKYKVIVDENETIDSNLLNKKIKVFCTDINKLSFSNLLYEQNEQLKNINMYDVID 639

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKI 683
            +++ +  +G  V +     GL+H+S++S +++   ++V K  + +   L++ D    + 
Sbjct: 640 VEIIHISKYGLMVKY-NDIVGLIHVSEISRKKMENINNVFKINEKIKGMLINIDYYNKRF 698

Query: 684 KLSMKVVD 691
            LS K+++
Sbjct: 699 SLSTKILE 706


>gi|323441962|gb|EGA99599.1| ribonuclease R [Staphylococcus aureus O46]
          Length = 790

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMVLIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|302332491|gb|ADL22684.1| exoribonuclease, VacB/RNase II family [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 790

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
          Length = 259

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 28/226 (12%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +  DI+   V + + D + R+DGR  +  R +     ++++  GS+L   GDTQ +V 
Sbjct: 3   EDILVDIKRDYVLSKLRDNE-RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVG 61

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V +   E     D+     R   +++   +P A+      G P    I   R+  R I  
Sbjct: 62  VKMQPGEPA--PDT---PDRGVIIVNAELVPLASPTFEP-GPPDENSIELARVVDRGIRE 115

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG-- 461
                   ++ +  +  + + +     + DG+   A+   +  ALM+  VP  +   G  
Sbjct: 116 SEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED 175

Query: 462 ---------IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
                    +++  +  G+ +  L D S +E  +G     +     
Sbjct: 176 YLLPVRDLPVSVTSLIVGNKY--LVDPSREEMSVGDTTLTITTDKD 219


>gi|194891452|ref|XP_001977495.1| GG18224 [Drosophila erecta]
 gi|190649144|gb|EDV46422.1| GG18224 [Drosophila erecta]
          Length = 415

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 17/158 (10%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVD 364
            + + +  R DGR S   RD+    G      G+     GDT+ +  VT           
Sbjct: 21  QLAVKQNQRFDGRRSNECRDVELTFG---SDWGTVAVSMGDTKVLTRVTCDMGTPA---- 73

Query: 365 SLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAI--------HPVLPQT 416
             S      F ++ N    A  +  +     +R +    L  R            +    
Sbjct: 74  -TSRPNEGKFQLNVNLAGVAFLDELQTTH-DQRSLTLNSLLERTFRSSRSVDLESLCVAA 131

Query: 417 AQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP 454
               + +R+   +   DG+   A+   +  ALM    P
Sbjct: 132 EHHVWCIRVDVNVLNHDGNLYDASTIATLAALMHFRRP 169


>gi|138896635|ref|YP_001127088.1| ribonuclease R [Geobacillus thermodenitrificans NG80-2]
 gi|196249336|ref|ZP_03148034.1| ribonuclease R [Geobacillus sp. G11MC16]
 gi|134268148|gb|ABO68343.1| Ribonuclease R [Geobacillus thermodenitrificans NG80-2]
 gi|196211093|gb|EDY05854.1| ribonuclease R [Geobacillus sp. G11MC16]
          Length = 755

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       ++ ++     ++   + G +  V +FG FV      +GLVH+S L+
Sbjct: 601 NMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT 660

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
            +              +T  + + GD + V++++ +   +I
Sbjct: 661 DDYYRYDERNYAMVGERTGKMYRIGDEITVRVINVNKDERI 701


>gi|11498717|ref|NP_069946.1| DNA-directed RNA polymerase subunit E' [Archaeoglobus fulgidus DSM
           4304]
 gi|2649472|gb|AAB90126.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 189

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 18/97 (18%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------A 658
             +I   P   ++ +G+V+++++FGAFV      D L+H+SQ++ + +            
Sbjct: 72  FNAICFRPLHQEVVEGEVIEIVEFGAFVSIGPF-DALLHMSQVTDDYMVFDEKNKRLVGR 130

Query: 659 KTSDVVKEGDTVWVKLLDFD------DRGKIKLSMKV 689
           +T  V++EGD V  +++         ++ KI L+M+ 
Sbjct: 131 ETKKVLQEGDKVRARIVSLSLKEREPEKSKIGLTMRQ 167


>gi|329729718|gb|EGG66119.1| ribonuclease R [Staphylococcus aureus subsp. aureus 21193]
          Length = 790

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|195158238|ref|XP_002019999.1| GL13731 [Drosophila persimilis]
 gi|194116768|gb|EDW38811.1| GL13731 [Drosophila persimilis]
          Length = 894

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++  G V  V  FGAFV     RDGL+H S +           +  GD +   +++ D +
Sbjct: 818 EVVTGAVTNVTHFGAFVDIGVERDGLLHKSHMKNCD-------LSIGDRIVASVVNLDKK 870

Query: 681 GKIKLSMKVVD 691
            ++K  +++ +
Sbjct: 871 -RLKFGLRLEN 880


>gi|169837181|ref|ZP_02870369.1| 30S ribosomal protein S1 [candidate division TM7 single-cell
           isolate TM7a]
          Length = 75

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSM 687
           +  FGAFV    A + LVHIS+L          V    +     +LD D   + I LS+
Sbjct: 11  ITPFGAFVQVSPAIEALVHISELGDSNNVDPEKVFTLNERKEFVILDIDKENRKISLSL 69


>gi|258423430|ref|ZP_05686321.1| ribonuclease R [Staphylococcus aureus A9635]
 gi|257846491|gb|EEV70514.1| ribonuclease R [Staphylococcus aureus A9635]
          Length = 790

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|224047235|ref|XP_002194171.1| PREDICTED: similar to S1 RNA-binding domain-containing protein 1
            [Taeniopygia guttata]
          Length = 1207

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 622  IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVKLLDF 677
            +  G+V     FG FV     + GL+ +  ++  +++K        +  G+ V VK+L+ 
Sbjct: 1133 VLTGKVENATPFGVFVDIGVGKAGLIPVRNITEAKLSKVKKRRSLGLGPGERVEVKVLNV 1192

Query: 678  D-DRGKIKLSM 687
            D  R +I L +
Sbjct: 1193 DIPRLRITLDL 1203


>gi|21282471|ref|NP_645559.1| ribonuclease R [Staphylococcus aureus subsp. aureus MW2]
 gi|49485652|ref|YP_042873.1| ribonuclease R [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208491|ref|ZP_06924920.1| ribonuclease R [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912583|ref|ZP_07130026.1| ribonuclease R [Staphylococcus aureus subsp. aureus TCH70]
 gi|21203908|dbj|BAB94607.1| ribonuclease R [Staphylococcus aureus subsp. aureus MW2]
 gi|32170296|emb|CAD91948.1| ribonuclease R [Staphylococcus aureus]
 gi|32170298|emb|CAD91949.1| ribonuclease R [Staphylococcus aureus]
 gi|32170300|emb|CAD91950.1| ribonuclease R [Staphylococcus aureus]
 gi|32170302|emb|CAD91951.1| ribonuclease R [Staphylococcus aureus]
 gi|32170304|emb|CAD91952.1| ribonuclease R [Staphylococcus aureus]
 gi|32170306|emb|CAD91953.1| ribonuclease R [Staphylococcus aureus]
 gi|32170308|emb|CAD91954.1| ribonuclease R [Staphylococcus aureus]
 gi|32170310|emb|CAD91955.1| ribonuclease R [Staphylococcus aureus]
 gi|32170312|emb|CAD91956.1| ribonuclease R [Staphylococcus aureus]
 gi|32170314|emb|CAD91957.1| ribonuclease R [Staphylococcus aureus]
 gi|32170316|emb|CAD91958.1| ribonuclease R [Staphylococcus aureus]
 gi|32170318|emb|CAD91959.1| ribonuclease R [Staphylococcus aureus]
 gi|49244095|emb|CAG42521.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886746|gb|EFH25650.1| ribonuclease R [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886829|gb|EFK82031.1| ribonuclease R [Staphylococcus aureus subsp. aureus TCH70]
          Length = 790

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|195444568|ref|XP_002069927.1| GK11782 [Drosophila willistoni]
 gi|194166012|gb|EDW80913.1| GK11782 [Drosophila willistoni]
          Length = 892

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  V  FGAFV     RDGL+H S +S          +  GD V   ++  D
Sbjct: 814 IGDVLTGAVTNVTHFGAFVDVGVDRDGLIHRSHMSDGE-------LSIGDRVIASVVKVD 866

Query: 679 DRGKIKLSMKVVD 691
            + +  L ++  D
Sbjct: 867 LQRRH-LGLRQED 878


>gi|15678292|ref|NP_275407.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621314|gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 184

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 19/120 (15%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            I+D G  K+     A          ++   PE+++I +G+V+++ +FGAFV      DG
Sbjct: 50  EIEDIGIGKVIMGDGAAYHE--VTFTALFFKPELHEIVEGEVIEIAEFGAFVRIGP-VDG 106

Query: 646 LVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK-----IKLSMKV 689
           LVH+SQ++ + +            ++   + EGD V  +++    +G+     + L+M+ 
Sbjct: 107 LVHVSQVTDDYITYDPKKGSLTGKESGRRLDEGDLVRARIVALSLKGRREGVKVGLTMRQ 166


>gi|126342519|ref|XP_001366359.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 337

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 1/139 (0%)

Query: 376 MHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGS 435
             +   P ++    R  + S  E       + A+ P +         + + + + +  GS
Sbjct: 113 CDFRRAPFSSRGRRRPPSGSSEEKELSLALQEALGPAVQLQRYPRAQVEVSALLLQDGGS 172

Query: 436 SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDH-LGHMDFKVA 494
           +  A V  + LAL DAG+ +   V    + L    D   +L  I  +E H    +   + 
Sbjct: 173 ALAAGVTAAGLALADAGIEMYDIVVACGLSLPWGFDPIWLLDPILYEEQHTAAGLTVALM 232

Query: 495 GTDSGITAMQMDMKIGGIS 513
              + +T +    +   I 
Sbjct: 233 PVRNEVTGILGSGEGRSID 251


>gi|118594776|ref|ZP_01552123.1| exoribonuclease II [Methylophilales bacterium HTCC2181]
 gi|118440554|gb|EAV47181.1| exoribonuclease II [Methylophilales bacterium HTCC2181]
          Length = 754

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 574 IRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQVVK 629
           I+  VE     + +I   G    + +     EA R+    ++      ++ ++Y   V  
Sbjct: 595 IKAKVEHRKLNIKDIAQLGE-HCSGTERRADEATRDVESWLKCYFMQDKIGEVYDATVAG 653

Query: 630 VMDFGAFVHFCG-ARDGLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDF 677
           V  FG FV   G   +GLVH+++L  +              +T    + GD + VK++  
Sbjct: 654 VTGFGLFVELDGIFIEGLVHVTELGNDYFTFDKSKHAMIGERTHLSYRLGDRLKVKVVRV 713

Query: 678 D-DRGKIKLSM 687
           D +  KI LS+
Sbjct: 714 DLETSKIDLSL 724


>gi|148378235|ref|YP_001252776.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
 gi|153931432|ref|YP_001382636.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
 gi|153934693|ref|YP_001386188.1| ribonuclease R [Clostridium botulinum A str. Hall]
 gi|148287719|emb|CAL81784.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
 gi|152927476|gb|ABS32976.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
 gi|152930607|gb|ABS36106.1| ribonuclease R [Clostridium botulinum A str. Hall]
          Length = 725

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I       G++      +   +V      + ++   +        
Sbjct: 556 RRYPDLIIHRIIKEYIN------GQIDDKRATKLTTEVEYASKQSSEMERVAQEAEREVD 609

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
           ++ ++      + + Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 610 DLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|332687037|ref|YP_004456811.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius ATCC
           35311]
 gi|332371046|dbj|BAK22002.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius ATCC
           35311]
          Length = 784

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----- 663
           M ++     ++ ++Y G +  V  FG FV      +GL+H++ L  +             
Sbjct: 627 MKKAEFMAGKIGEVYNGIISSVTKFGIFVELPNTIEGLIHVNNLKQDYFHFIEKHLALVG 686

Query: 664 ------VKEGDTVWVKLLDFDDRGK 682
                 +K G  V V++   D   +
Sbjct: 687 ERTGITLKIGQKVSVRVEKADPDTR 711


>gi|282910428|ref|ZP_06318232.1| ribonuclease R [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325820|gb|EFB56128.1| ribonuclease R [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438789|gb|ADQ77860.1| ribonuclease R [Staphylococcus aureus subsp. aureus TCH60]
          Length = 790

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIESERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|168177565|ref|ZP_02612229.1| ribonuclease R [Clostridium botulinum NCTC 2916]
 gi|226947453|ref|YP_002802544.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
 gi|182670398|gb|EDT82372.1| ribonuclease R [Clostridium botulinum NCTC 2916]
 gi|226841831|gb|ACO84497.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
          Length = 725

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I            +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M         + + Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 616 YMSER------IGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|49483038|ref|YP_040262.1| ribonuclease R [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424901|ref|ZP_05601328.1| ribonuclease R [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427569|ref|ZP_05603968.1| ribonuclease R [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430200|ref|ZP_05606584.1| ribonuclease R [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432901|ref|ZP_05609261.1| ribonuclease R [Staphylococcus aureus subsp. aureus E1410]
 gi|257435805|ref|ZP_05611853.1| ribonuclease R [Staphylococcus aureus subsp. aureus M876]
 gi|282903412|ref|ZP_06311303.1| ribonuclease R [Staphylococcus aureus subsp. aureus C160]
 gi|282905191|ref|ZP_06313048.1| ribonuclease R [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282913624|ref|ZP_06321413.1| ribonuclease R [Staphylococcus aureus subsp. aureus M899]
 gi|282918575|ref|ZP_06326312.1| ribonuclease R [Staphylococcus aureus subsp. aureus C427]
 gi|282923541|ref|ZP_06331221.1| ribonuclease R [Staphylococcus aureus subsp. aureus C101]
 gi|283957614|ref|ZP_06375067.1| ribonuclease R [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293500666|ref|ZP_06666517.1| ribonuclease R [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509615|ref|ZP_06668326.1| ribonuclease R [Staphylococcus aureus subsp. aureus M809]
 gi|293524201|ref|ZP_06670888.1| ribonuclease R [Staphylococcus aureus subsp. aureus M1015]
 gi|295427360|ref|ZP_06819995.1| ribonuclease R [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590284|ref|ZP_06948923.1| exoribonuclease R [Staphylococcus aureus subsp. aureus MN8]
 gi|49241167|emb|CAG39845.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272471|gb|EEV04594.1| ribonuclease R [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275762|gb|EEV07235.1| ribonuclease R [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279397|gb|EEV09998.1| ribonuclease R [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282316|gb|EEV12451.1| ribonuclease R [Staphylococcus aureus subsp. aureus E1410]
 gi|257284996|gb|EEV15115.1| ribonuclease R [Staphylococcus aureus subsp. aureus M876]
 gi|282314409|gb|EFB44799.1| ribonuclease R [Staphylococcus aureus subsp. aureus C101]
 gi|282317709|gb|EFB48081.1| ribonuclease R [Staphylococcus aureus subsp. aureus C427]
 gi|282322656|gb|EFB52978.1| ribonuclease R [Staphylococcus aureus subsp. aureus M899]
 gi|282331598|gb|EFB61110.1| ribonuclease R [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596367|gb|EFC01328.1| ribonuclease R [Staphylococcus aureus subsp. aureus C160]
 gi|283791065|gb|EFC29880.1| ribonuclease R [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290921164|gb|EFD98225.1| ribonuclease R [Staphylococcus aureus subsp. aureus M1015]
 gi|291095671|gb|EFE25932.1| ribonuclease R [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467712|gb|EFF10227.1| ribonuclease R [Staphylococcus aureus subsp. aureus M809]
 gi|295128748|gb|EFG58379.1| ribonuclease R [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576583|gb|EFH95298.1| exoribonuclease R [Staphylococcus aureus subsp. aureus MN8]
 gi|315194401|gb|EFU24793.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus CGS00]
          Length = 790

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 EHTSKRERRAIESERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|297618529|ref|YP_003706634.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
 gi|297377506|gb|ADI35661.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
          Length = 189

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 18/93 (19%)

Query: 614 TDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSD 662
           T  PEV+++ +G++V +++FGAF+      DGL+HISQ+  + V            +T  
Sbjct: 76  TYEPEVHEMIEGEIVDIVEFGAFIRLGP-LDGLIHISQVMDDYVAFDPQREAIIGKETGK 134

Query: 663 VVKEGDTVWVKLLDF---DDRGK---IKLSMKV 689
           V+++GD V  +++     +DR +   I L+M+ 
Sbjct: 135 VLEKGDKVRARIVAVSLKEDRKRGSKIALTMRQ 167


>gi|170761827|ref|YP_001785563.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
 gi|169408816|gb|ACA57227.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
          Length = 725

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I            +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M         + + Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 616 YMSER------IGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|302822837|ref|XP_002993074.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
 gi|300139074|gb|EFJ05822.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
          Length = 417

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-------ARDGL 646
            ++      + A      S        +I  G++  +  F  F+           A   L
Sbjct: 213 PLSGHIEMSLTATTSQDSSGWKKFGAGEIVSGRIHNIEAFRIFISLAESDVFLVCAPGCL 272

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
            H+S++  + +   S + K G  V VK+L   +  +I L MK 
Sbjct: 273 CHVSEVFYDFIQDLSTLYKVGQWVQVKILK--ETKRISLGMKA 313


>gi|322804500|emb|CBZ02050.1| 3'-to-5' exoribonuclease RNase R [Clostridium botulinum H04402 065]
          Length = 725

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I            +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M         + + Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 616 YMSER------IGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|187777180|ref|ZP_02993653.1| hypothetical protein CLOSPO_00726 [Clostridium sporogenes ATCC
           15579]
 gi|187774108|gb|EDU37910.1| hypothetical protein CLOSPO_00726 [Clostridium sporogenes ATCC
           15579]
          Length = 725

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I            +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M         + + Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 616 YMSER------IGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|168182158|ref|ZP_02616822.1| ribonuclease R [Clostridium botulinum Bf]
 gi|237793551|ref|YP_002861103.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
 gi|182674694|gb|EDT86655.1| ribonuclease R [Clostridium botulinum Bf]
 gi|229263406|gb|ACQ54439.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
          Length = 725

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I            +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M         + + Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 616 YMSER------IGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|305662583|ref|YP_003858871.1| translation initiation factor 2, alpha subunit [Ignisphaera
           aggregans DSM 17230]
 gi|304377152|gb|ADM26991.1| translation initiation factor 2, alpha subunit [Ignisphaera
           aggregans DSM 17230]
          Length = 272

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEGDTVWV 672
            +PE+ ++   ++ K++D GA+         +  +  S+++T+ +    DV+KEG  V  
Sbjct: 9   RLPEIGEVVIARITKIIDKGAYAELLEFEKNEAFIPWSEITTKSIRDIRDVLKEGQVVIG 68

Query: 673 KLLDFDD---RGKIKLSMKVVDQNTGK 696
           K++  D    R ++ +S+K V +   +
Sbjct: 69  KVIRVDKKPYRVEVDISLKRVTEGEKR 95


>gi|116873813|ref|YP_850594.1| ribonuclease R, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742691|emb|CAK21815.1| ribonuclease R, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 793

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     I    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETIEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|153939819|ref|YP_001389595.1| ribonuclease R [Clostridium botulinum F str. Langeland]
 gi|152935715|gb|ABS41213.1| ribonuclease R [Clostridium botulinum F str. Langeland]
 gi|295317691|gb|ADF98068.1| ribonuclease R [Clostridium botulinum F str. 230613]
          Length = 725

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I            +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M         + + Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 616 YMSER------IGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|163781625|ref|ZP_02176625.1| VacB protein (ribonuclease II family) [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882845|gb|EDP76349.1| VacB protein (ribonuclease II family) [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 705

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 13/94 (13%)

Query: 605 AAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGA-RDGLVHIS----------QLS 653
            A +++++      + ++++G +  V+ FG FV       +GLV I+          + +
Sbjct: 604 EAIDILKARYMRSRLGEVFEGIITGVVQFGFFVELKETLVEGLVRINTLTDDDYVFDEPA 663

Query: 654 TERVA-KTSDVVKEGDTVWVKLLDFD-DRGKIKL 685
              V  +T  V + GDTV VK+L  D +RGKI+L
Sbjct: 664 HRFVGVRTGKVYRLGDTVRVKVLAVDEERGKIEL 697


>gi|241889964|ref|ZP_04777262.1| general stress protein 13 [Gemella haemolysans ATCC 10379]
 gi|241863586|gb|EER67970.1| general stress protein 13 [Gemella haemolysans ATCC 10379]
          Length = 122

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I K +V  V  +GAF+       GL+HIS+++   +   S  +K+ + + VK+L   D 
Sbjct: 10  DIIKVKVTAVKPYGAFIETRDKMVGLIHISEITNCFIFDISSYIKQDEILEVKVLSIKD- 68

Query: 681 GKIKLSM 687
            KI  ++
Sbjct: 69  NKINATL 75


>gi|313665029|ref|YP_004046900.1| ribonuclease R [Mycoplasma leachii PG50]
 gi|312949314|gb|ADR23910.1| putative ribonuclease R [Mycoplasma leachii PG50]
          Length = 704

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 13/106 (12%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           NI +D   K        I+A          + +VN  Y   +  V+ FG F+      +G
Sbjct: 595 NIINDTETKSVECEREVIKACMCEY----MLNKVNTTYTATISAVLKFGIFIQLDNLVEG 650

Query: 646 LVHISQLSTERVAKTSDVV---------KEGDTVWVKLLDFDDRGK 682
           LVHIS +++  V   ++ +         + G  V +KL+  D + +
Sbjct: 651 LVHISNMNSNLVYDETNHILIKPDNTYYRMGQKVKIKLISVDIKKR 696


>gi|297528816|ref|YP_003670091.1| ribonuclease R [Geobacillus sp. C56-T3]
 gi|297252068|gb|ADI25514.1| ribonuclease R [Geobacillus sp. C56-T3]
          Length = 758

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       ++ ++     ++   + G +  V +FG FV      +GLVH+S L+
Sbjct: 601 DMERRAVEAERETDDLKKTEFMEDKIEMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT 660

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
            +              +T  + + GD + V++++ +   +I
Sbjct: 661 DDYYRYDERHYALIGERTGKMYRIGDEITVRVINVNKDERI 701


>gi|145344856|ref|XP_001416940.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577166|gb|ABO95233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 285

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 83/254 (32%), Gaps = 49/254 (19%)

Query: 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAI--VVVTLGTREDEQYVDSLSG 368
             R DGR     R  +   G+     GS+L   G T A   V  T+ T       D+   
Sbjct: 22  GARGDGRPLGRARARTCATGVASGALGSALAKHGATTACAGVTATIAT------PDATRP 75

Query: 369 TQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGR---------LARRAIHPVLPQTAQF 419
            +     +  +  P A+ +        RRE              +  + +  +  +   F
Sbjct: 76  EE-GFLEIAVDHAPQASEDARDGRTRGRREAAAAACASAVANAAVLGKDLKQLCVERGTF 134

Query: 420 PYTLRIVSEITESDGSSSMATVCGSSLALMDAGVP----ISKPVAGIAMGLVKDGDDFI- 474
            + +R+   +   DG ++   V     AL D  +P        VA    G   +GD    
Sbjct: 135 AWRVRVDVIVLCDDGGAADCAVTAVMAALRDCVLPEVAVTRGKVALEGDGTAMNGDGVRK 194

Query: 475 ---------------------ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGI- 512
                                +L D + +E+ L   +  V  T+ G   ++   K GG  
Sbjct: 195 GTRLDVQTMPVCLTTALYREHLLVDPTREEEALSECEVSVVLTEDG--LLRGVFKPGGEV 252

Query: 513 --SENIMVMALQQA 524
             +E+ ++  +  A
Sbjct: 253 EATEDTLMKCIAAA 266


>gi|78779337|ref|YP_397449.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312]
 gi|78712836|gb|ABB50013.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312]
          Length = 739

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 553 VEIMAIPPDQIRNVIG---MGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
           +  + I      N+I        +I+ I       + ID     K   +       + + 
Sbjct: 591 INEINILESDSLNLIDWDIFNSSIIKNIDTLFNKFI-IDKLNEYKCKINQYKLNMISIKK 649

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVA---------- 658
           +R   ++  +  IY G ++ V  +G FV       +GLVH+S L+ +             
Sbjct: 650 VRKAENL--LGNIYNGFILSVQSYGFFVEISDLNVEGLVHVSTLNNDWYEYRSRQNLLIG 707

Query: 659 -KTSDVVKEGDTVWVKLLDFD 678
            K+    K GD + VK++  D
Sbjct: 708 RKSKKSYKVGDEIEVKIIKVD 728


>gi|115944443|ref|XP_001196403.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1545

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 604 EAAREMIR--SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            AAR            E N    G +   M +G FV F     GL   + +S E V+ TS
Sbjct: 536 NAARNKTEIVRDFSELETNMFLIGVLRHTMSYGVFVEFPNHIVGLAPKAMMSDEFVSDTS 595

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            + + G T+  K+ + + ++ +  +S+K  D
Sbjct: 596 KLYEVGQTLRAKVTEVNVEKKRFLVSLKTSD 626



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +  ++ +G V    + G FV       G + + +LS   V   S V   G  +  K+L  
Sbjct: 1058 KKGQVVRGYVRHCSEKGVFVSLSSNLHGRILLKKLSAFYVKDPSAVFTVGKLLSTKVLSI 1117

Query: 678  DDR-GKIKLS 686
            D + GKI+LS
Sbjct: 1118 DKKSGKIELS 1127


>gi|304373249|ref|YP_003856458.1| VACB-like ribonuclease II [Mycoplasma hyorhinis HUB-1]
 gi|304309440|gb|ADM21920.1| VACB-like ribonuclease II [Mycoplasma hyorhinis HUB-1]
          Length = 694

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL----STERVAKTSDV--------VKE 666
           + + Y+GQ+  +  FG FV      D LVHIS L      E +               + 
Sbjct: 609 IGQKYRGQITSIKKFGFFVELENNVDVLVHISDLQTNEQEEFILSDDSFTLANKFYKYQL 668

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  V V++L  D   GKI  S KVV +N
Sbjct: 669 GQFVEVEILSIDIPFGKI--SAKVVLKN 694


>gi|194910905|ref|XP_001982249.1| GG12501 [Drosophila erecta]
 gi|190656887|gb|EDV54119.1| GG12501 [Drosophila erecta]
          Length = 990

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G V  V  FGAFV     RDGL+H S ++  +       +  GD +   ++  D
Sbjct: 911 IGEVVTGAVTNVTQFGAFVDVGVERDGLIHNSHMNDAQ-------LSIGDRIVASVVKVD 963

Query: 679 DRGKIKLSMKVVD 691
            + + +L +++ +
Sbjct: 964 LQRR-QLGLRLEN 975


>gi|115651987|ref|XP_789726.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 1537

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 604 EAAREMIR--SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTS 661
            AAR            E N    G +   M +G FV F     GL   + +S E V+ TS
Sbjct: 528 NAARNKTEIVRDFSELETNMFLIGVLRHTMSYGVFVEFPNHIVGLAPKAMMSDEFVSDTS 587

Query: 662 DVVKEGDTVWVKLLDFD-DRGKIKLSMKVVD 691
            + + G T+  K+ + + ++ +  +S+K  D
Sbjct: 588 KLYEVGQTLRAKVTEVNVEKKRFLVSLKTSD 618



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
            +  ++ +G V    + G FV       G + + +LS   V   S V   G  +  K+L  
Sbjct: 1050 KKGQVVRGYVRHCSEKGVFVSLSSNLHGRILLKKLSAFYVKDPSAVFTVGKLLSTKVLSI 1109

Query: 678  DDR-GKIKLS 686
            D + GKI+LS
Sbjct: 1110 DKKSGKIELS 1119


>gi|50740443|ref|XP_419463.1| PREDICTED: similar to S1 RNA binding domain 1 [Gallus gallus]
          Length = 980

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 622 IYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVKLLDF 677
           +  G+V     FG FV     + GL+ +  ++  +++K        +  G+ V VK+L+ 
Sbjct: 906 VLTGKVENATPFGVFVDIGVGKAGLIPVRNITEAKLSKVKKRRSLGLGPGERVEVKVLNV 965

Query: 678 D-DRGKIKLSM 687
           D  R +I L +
Sbjct: 966 DIPRLRITLDL 976


>gi|330723878|gb|AEC46248.1| VACB-like ribonuclease II [Mycoplasma hyorhinis MCLD]
          Length = 694

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL----STERVAKTSDV--------VKE 666
           + + Y+GQ+  +  FG FV      D LVHIS L      E +               + 
Sbjct: 609 IGQKYRGQITSIKKFGFFVELENNVDVLVHISDLQTNEQEEFILSDDSFTLANKFYKYQL 668

Query: 667 GDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           G  V V++L  D   GKI  S KVV +N
Sbjct: 669 GQFVEVEILSIDIPFGKI--SAKVVLKN 694


>gi|282922079|ref|ZP_06329776.1| ribonuclease R [Staphylococcus aureus A9765]
 gi|282593737|gb|EFB98729.1| ribonuclease R [Staphylococcus aureus A9765]
          Length = 790

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
             T K    ++       E+ ++   +  +   ++G V  V +FG F+      +G+VHI
Sbjct: 601 KHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKL--LDFDDR 680
           + ++ +              + + V + GDTV VK+  +D D+R
Sbjct: 661 ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDER 704


>gi|198450311|ref|XP_001357928.2| GA16052 [Drosophila pseudoobscura pseudoobscura]
 gi|198130981|gb|EAL27064.2| GA16052 [Drosophila pseudoobscura pseudoobscura]
          Length = 894

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
           ++  G V  V  FGAFV     RDGL+H S ++          +  GD +   +++ D +
Sbjct: 818 EVVTGAVTNVTHFGAFVDIGVERDGLLHKSHMNNCD-------LSIGDRIVASVVNLDKK 870

Query: 681 GKIKLSMKVVD 691
            ++K  +++ +
Sbjct: 871 -RLKFGLRLEN 880


>gi|67470372|ref|XP_651154.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467852|gb|EAL45767.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 223

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 18/225 (8%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R IS    +  ++ G  +F +G +  I  V      D    ++     R    +     
Sbjct: 14  IRSISYVRDVSSKSDGCYMFKQGKSCVISGV--NAPRDCPKKEA--NPDRAIVKVE---- 65

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                E        RR        +  +   +         + + ++I + DGS    T+
Sbjct: 66  ---VYERCSSFDNQRRT-ELEEFIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVTM 121

Query: 442 CGSSLALMDAGVPISKPVAGIAM-GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG- 499
             +  AL+ +GV +   V G+ + G + D     I+ D   D        F +  T  G 
Sbjct: 122 NAAMCALLFSGVDMKGIVVGMCVAGKINDKGTIEIVIDPD-DSISYKWKLFTIWDTVKGE 180

Query: 500 ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
           I AM+M  K    S++ + M++  +K+  + I+  +  V+ +   
Sbjct: 181 IVAMKMKGKC---SDDQLKMSMDVSKKNAVKIVKAIKMVIEKQYP 222



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 9   IEWAGRPLKLETGRI---------ARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           +E   R + +E+G+I         + +SDG  +   G++ V++ V   R     ++  P 
Sbjct: 1   MEEDKRTI-IESGKIRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDC-PKKEANPD 58

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
               +   Y          R E      E + S +    +   +     N    + N + 
Sbjct: 59  RAIVKVEVYERCSSFDNQRRTEL----EEFIKSGVEWTVLSEQYPNGLIN----VCNQIV 110

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV-DYING----QYVLNPRLDEDQG-S 173
            D + S   V+M AA  AL+ SG+  +G VVG  V   IN     + V++P         
Sbjct: 111 KD-DGSIEAVTMNAAMCALLFSGVDMKGIVVGMCVAGKINDKGTIEIVIDPDDSISYKWK 169

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           L       +  ++ ++++    S+D +  ++         +++AI 
Sbjct: 170 LFTIWDTVKGEIVAMKMKGK-CSDDQLKMSMDVSKKNAVKIVKAIK 214


>gi|325958359|ref|YP_004289825.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
 gi|325329791|gb|ADZ08853.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
          Length = 195

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 20/121 (16%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            I++ G  K+     A       +  ++   PE+++I +G+V+++ +FGAF+      DG
Sbjct: 50  EIEELGIGKVIMGDGAAYH--DVVFNALFFKPELHEIVEGEVIEITEFGAFIRIGPM-DG 106

Query: 646 LVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRG------KIKLSMK 688
           LVH+SQ++ + +            ++   ++EG+ V  +++    +G      KI L+M+
Sbjct: 107 LVHVSQVTDDYINYDGKRGALMGKESKKTLEEGNNVRARIVALSLKGKSSKETKIGLTMR 166

Query: 689 V 689
            
Sbjct: 167 Q 167


>gi|148706664|gb|EDL38611.1| S1 RNA binding domain 1 [Mus musculus]
          Length = 995

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVK 673
           +V  +  G+V     FG FV     + GL+ I  ++  +++KT       +  G+ V VK
Sbjct: 917 QVGTVLTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVK 976

Query: 674 LLDFD-DRGKIKLSM 687
           +L+ D  R +I L +
Sbjct: 977 VLNVDIPRSRISLDL 991


>gi|123455454|ref|XP_001315471.1| helicase [Trichomonas vaginalis G3]
 gi|121898149|gb|EAY03248.1| helicase, putative [Trichomonas vaginalis G3]
          Length = 1006

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD---GLVHISQLSTERVAK--TSDV 663
                   PEV  IYKG+V  V +  AFV   G      G++ ++++S +  ++   +D+
Sbjct: 89  FDEPDIMQPEVGVIYKGRVTSVTNQCAFVKIEGFHSKPVGMLPVTEMSNDPGSRLLATDI 148

Query: 664 VKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695
           V  G  ++VK++       + LS+K +DQ TG
Sbjct: 149 VGVGQHLFVKVIKSMTAS-LTLSIKGIDQTTG 179


>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina
           98AG31]
          Length = 319

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 50/210 (23%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R D R +  +R ++  +  L R  GS  F  GD + +  +T G  E +     +   +  
Sbjct: 5   RSDARTNLDIRPLTISLSTLSRADGSCNFAFGDLKVLGAMT-GPAEVK-----VWDEKPK 58

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITE- 431
              +  N LP +      +  PS +        +  I P++         ++I  +    
Sbjct: 59  HATVEVNVLPIS-----SLPGPSSKSSAQS--IKSFISPIIYLEQYPRSLIQINLQTLSK 111

Query: 432 -------------------SDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVK---- 468
                                 S   A +  SS+AL+D GV +S     +A+ +VK    
Sbjct: 112 PSERWSSTRKPSRLGFEENESISERAALMNASSIALLDGGVGMSGVGIAVAVAIVKSELV 171

Query: 469 -------------DGDDFIILSDISGDEDH 485
                        +  +++IL D S +E+ 
Sbjct: 172 QQIGEDEDRMKEDEDQEWVILLDPSPNEEA 201



 Score = 41.8 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 34/170 (20%)

Query: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERT-YAVGK 72
           RPL +    ++R +DG+    +G+  VL  +     +K           + E+  +A  +
Sbjct: 15  RPLTISLSTLSR-ADGSCNFAFGDLKVLGAMTGPAEVK----------VWDEKPKHATVE 63

Query: 73  IPGGYLRRESRPTENEILISRMIDRSIRPL--FSKCYKNETQVIINVMQ----------- 119
           +    +     P+      S  I   I P+    +  ++  Q+ +  +            
Sbjct: 64  VNVLPISSLPGPSSKSSAQS--IKSFISPIIYLEQYPRSLIQINLQTLSKPSERWSSTRK 121

Query: 120 -------HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYV 162
                   +   S     M A+S AL+  G+   G  +   V  +  + V
Sbjct: 122 PSRLGFEENESISERAALMNASSIALLDGGVGMSGVGIAVAVAIVKSELV 171


>gi|261420483|ref|YP_003254165.1| ribonuclease R [Geobacillus sp. Y412MC61]
 gi|319768154|ref|YP_004133655.1| ribonuclease R [Geobacillus sp. Y412MC52]
 gi|261376940|gb|ACX79683.1| ribonuclease R [Geobacillus sp. Y412MC61]
 gi|317113020|gb|ADU95512.1| ribonuclease R [Geobacillus sp. Y412MC52]
          Length = 758

 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       ++ ++     ++   + G +  V +FG FV      +GLVH+S L+
Sbjct: 601 DMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT 660

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
            +              +T  + + GD + V++++ +   +I
Sbjct: 661 DDYYRYDERHYALIGERTGKMYRIGDEITVRVINVNKDERI 701


>gi|56421579|ref|YP_148897.1| ribonuclease R [Geobacillus kaustophilus HTA426]
 gi|56381421|dbj|BAD77329.1| ribonuclease R [Geobacillus kaustophilus HTA426]
          Length = 758

 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 594 KIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
            +   ++       ++ ++     ++   + G +  V +FG FV      +GLVH+S L+
Sbjct: 601 DMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT 660

Query: 654 TERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
            +              +T  + + GD + V++++ +   +I
Sbjct: 661 DDYYRYDERHYALIGERTGKMYRIGDEITVRVINVNKDERI 701


>gi|331701669|ref|YP_004398628.1| ribonuclease R [Lactobacillus buchneri NRRL B-30929]
 gi|329129012|gb|AEB73565.1| ribonuclease R [Lactobacillus buchneri NRRL B-30929]
          Length = 775

 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 572 KVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQV 627
               GI ++T  +  N+ D+     +      ++A R+   M ++      + + + G V
Sbjct: 583 YQDNGINDETKKRYANVLDEIATTTSQYERRAVDAERDTDSMKKAEYMNDHIGEEFDGVV 642

Query: 628 VKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV-----------VKEGDTVWVKLLD 676
             VM FG F+      +GLVHIS+++ +                    K G  + VK+++
Sbjct: 643 SSVMKFGLFIELPNTVEGLVHISRMNDDYYQYVEQFMALVGRNTRRTYKMGQAIRVKVVN 702

Query: 677 FD 678
            D
Sbjct: 703 VD 704


>gi|145566961|sp|Q497V5|SRBD1_MOUSE RecName: Full=S1 RNA-binding domain-containing protein 1
          Length = 1015

 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 618  EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVK 673
            +V  +  G+V     FG FV     + GL+ I  ++  +++KT       +  G+ V VK
Sbjct: 937  QVGTVLTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVK 996

Query: 674  LLDFD-DRGKIKLSM 687
            +L+ D  R +I L +
Sbjct: 997  VLNVDIPRSRISLDL 1011


>gi|329767042|ref|ZP_08258570.1| hypothetical protein HMPREF0428_00267 [Gemella haemolysans M341]
 gi|328837767|gb|EGF87392.1| hypothetical protein HMPREF0428_00267 [Gemella haemolysans M341]
          Length = 122

 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR 680
            I K +V  V  +GAF+       GL+HIS+++   +   S  +K+ + + VK+L   D 
Sbjct: 10  DIIKVKVTAVKPYGAFIETRDKMVGLIHISEITNCFIFDISSYIKQDEILEVKVLSIKD- 68

Query: 681 GKIKLSM 687
            KI  ++
Sbjct: 69  NKINATL 75


>gi|170756581|ref|YP_001779863.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
 gi|169121793|gb|ACA45629.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
          Length = 725

 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I            +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M   I         Y+G +  V +FG FV      +GLVHIS LS +            
Sbjct: 616 YMSERIGGE------YEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
              + ++ + GDTV +K+   D
Sbjct: 670 GEASKNIYRLGDTVKIKVSKVD 691


>gi|260892584|ref|YP_003238681.1| RNA binding S1 domain protein [Ammonifex degensii KC4]
 gi|260864725|gb|ACX51831.1| RNA binding S1 domain protein [Ammonifex degensii KC4]
          Length = 274

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGA--FVHFCGARDGL 646
           +D     AS   A    AR+    +     V  + +    +  D     FV      +G 
Sbjct: 93  EDTLTFRASRKKALEVKARDAWLRLRPGERVEALVRRPAFRKEDRRVAGFVVEVDGVEGF 152

Query: 647 VHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVV 690
           +   +LS   V     +++ GD V V++L+ D +RG++ +S K V
Sbjct: 153 LPRGELSWGWVDDPLKLLRPGDRVVVEVLEADRERGRLVVSRKAV 197


>gi|254430923|ref|ZP_05044626.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
 gi|197625376|gb|EDY37935.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
          Length = 422

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           T K+  S      AAR          EV ++ +G V  +  +G FV   G   GL+H S 
Sbjct: 293 TRKLVLSEKRAATAAR------FAELEVGQLVEGVVASIKPYGFFVDL-GGISGLLHHSC 345

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNTGKPIV 699
           ++   +    +   +G+ +   + D D  RG+I L+  +++   G+ +V
Sbjct: 346 VTGAELRDLREAFSQGERLSALITDLDPGRGRIALNTALLEGQPGELLV 394


>gi|194015352|ref|ZP_03053968.1| ribonuclease R [Bacillus pumilus ATCC 7061]
 gi|194012756|gb|EDW22322.1| ribonuclease R [Bacillus pumilus ATCC 7061]
          Length = 779

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   S+       ++ ++   + ++ + + G +  V +FG FV      +GLVH+S ++ 
Sbjct: 603 MERRSVDAERETDDLKKAEFMLDKIGEEFDGMISSVTNFGLFVELPNTIEGLVHVSYMTD 662

Query: 655 ERV-----------AKTSDVVKEGDTVWVKLLDFDD 679
           +              +T +V + GD + VK+++ + 
Sbjct: 663 DYYRFDEQHFAMIGERTGNVYRIGDEITVKVVNVNK 698


>gi|57866444|ref|YP_188043.1| VacB/RNase II family exoribonuclease [Staphylococcus epidermidis
           RP62A]
 gi|251810216|ref|ZP_04824689.1| exoribonuclease R [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875637|ref|ZP_06284508.1| ribonuclease R [Staphylococcus epidermidis SK135]
 gi|57637102|gb|AAW53890.1| exoribonuclease, VacB/RNase II family [Staphylococcus epidermidis
           RP62A]
 gi|251806268|gb|EES58925.1| exoribonuclease R [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295664|gb|EFA88187.1| ribonuclease R [Staphylococcus epidermidis SK135]
          Length = 792

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           + ++ +              + + V + GDTV VK+   D   ++
Sbjct: 661 ANMTDDYYHFDERQMALIGERQAKVFRIGDTVKVKVTHVDVEERM 705


>gi|329737944|gb|EGG74168.1| ribonuclease R [Staphylococcus epidermidis VCU045]
          Length = 792

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 601 EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 660

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           + ++ +              + + V + GDTV VK+   D   ++
Sbjct: 661 ANMTDDYYHFDERQMALIGERQAKVFRIGDTVKVKVTHVDVEERM 705


>gi|296185676|ref|ZP_06854085.1| ribonuclease R [Clostridium carboxidivorans P7]
 gi|296049804|gb|EFG89229.1| ribonuclease R [Clostridium carboxidivorans P7]
          Length = 678

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I      I     +  +K + + +   + A   + +++ A 
Sbjct: 512 RRYPDLIIHRIIKEFINGQIDDKRNKILTADVEYASKQSSEMERVAQDAEREVEDLKKAE 571

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M   I         ++G +  V +FG FV      +GLVHIS L  +            
Sbjct: 572 YMSERIGQE------FEGIISSVTNFGMFVELPNTIEGLVHISSLDDDYYVYDEKHLSLI 625

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
             +T ++ K GD   +K+   D
Sbjct: 626 GERTKNIYKLGDEAKIKVSKVD 647


>gi|302839444|ref|XP_002951279.1| eukaryotic translation initiation factor 2 alpha [Volvox carteri f.
           nagariensis]
 gi|300263608|gb|EFJ47808.1| eukaryotic translation initiation factor 2 alpha [Volvox carteri f.
           nagariensis]
          Length = 333

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 603 IEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKT 660
           +   ++        PEV+ +   QV  + + GA+V        +G++ +S+LS  R+   
Sbjct: 1   MAQHQDCRMYEAKYPEVDDVVMVQVKLIAEMGAYVSLLEYNGIEGMILLSELSRRRIRSI 60

Query: 661 SDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
           + ++K G    V +L  D ++G I LS + V   
Sbjct: 61  TKLIKVGRQEPVMVLRVDKEKGYIDLSKRRVSPE 94


>gi|323350294|ref|ZP_08085959.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
 gi|322123479|gb|EFX95150.1| S1 RNA binding domain protein [Streptococcus sanguinis VMC66]
          Length = 119

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D
Sbjct: 1   MKIGDKLKGKITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKVGQQVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKSSLSMRTLEEE 78


>gi|104773520|ref|YP_618500.1| putative RNA-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422601|emb|CAI97204.1| Putative RNA-binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125151|gb|ADY84481.1| Putative ribosomal protein S1 [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 117

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           +V +   G +  V D G FV     + GLVH +   ++   K     + GD V V + + 
Sbjct: 4   KVGQRLDGVINNVTDLGIFVTLPKHKSGLVHRNDFGSDWPRK-RQHWQAGDQVRVVVQNL 62

Query: 678 DDRGKIKLSMKVVDQN 693
             +G++ LS++ V+  
Sbjct: 63  -RKGRLDLSIRRVNDP 77


>gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
 gi|149901987|gb|ABR32820.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
          Length = 755

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPE-------VNKIYKGQVVKVM 631
           E  G ++N   +     A  S      A++  R + D+ +       + + ++G +  V 
Sbjct: 599 EVDGTRINKLKNIVGYAAKQSSEMERKAQDAEREVDDLKKAEYMQERIGQEFEGIISSVT 658

Query: 632 DFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDR 680
            FG FV      +GLVHI+ L  +              +T  + K GD V V+ ++ D  
Sbjct: 659 SFGIFVELPNTIEGLVHITDLDDDYYIFNEANLSLIGERTKKLYKLGDKVKVECVNVDIT 718

Query: 681 GK 682
            +
Sbjct: 719 NR 720


>gi|226443099|ref|NP_084409.3| S1 RNA-binding domain-containing protein 1 [Mus musculus]
          Length = 981

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVK 673
           +V  +  G+V     FG FV     + GL+ I  ++  +++KT       +  G+ V VK
Sbjct: 903 QVGTVLTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVK 962

Query: 674 LLDFD-DRGKIKLSM 687
           +L+ D  R +I L +
Sbjct: 963 VLNVDIPRSRISLDL 977


>gi|313900453|ref|ZP_07833946.1| ribonuclease R [Clostridium sp. HGF2]
 gi|312954515|gb|EFR36190.1| ribonuclease R [Clostridium sp. HGF2]
          Length = 710

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--- 657
                  +M ++      V  ++ G V  +  FG FV      +GLVH++ L+ +     
Sbjct: 599 DAEREVDDMKKAQYMERFVGHMFDGVVSGITKFGMFVELENTVEGLVHVTSLTDDYYHYD 658

Query: 658 --------AKTSDVVKEGDTVWVKLLDFDDRGK 682
                     T+ V K G  V VK    D   +
Sbjct: 659 EMTKSLIGEHTAKVYKMGQKVRVKCSGADRFKR 691


>gi|168308206|ref|ZP_02690881.1| transcriptional accessory protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902459|gb|EDT48748.1| transcriptional accessory protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 706

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 35/241 (14%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL-- 521
           +G+  +     +LS +SG         F+       I   +    I  I++ +   A   
Sbjct: 484 VGVDVNTASIPLLSKVSGLNKRSAKKIFEYVKKHQFIENREQLKTIPYITDKVFEQAAGF 543

Query: 522 -----QQAKRGRLHILNEMSKVLSE-------SRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
                      R  I  E   V++E          +L      +  +   P+++  ++  
Sbjct: 544 LRINNANNFLDRTSIHPEAYPVVNELCKYLQLPINKLINNYQVLNQL--NPNELTTILKT 601

Query: 570 GGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
               I  I+      + ++ DD  + I  S + +I              ++  + +G + 
Sbjct: 602 DIYTIENIINNLKNPLQDVRDDYDIPILRSQMVDINN-----------LKIGMLVQGTIR 650

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              +FG+F+      D L+HIS           D +     + V +   D    KI L +
Sbjct: 651 NQTEFGSFIDIGLKNDALLHISNYCE------EDNLHVNKNINVYIDKIDTITQKISLKL 704

Query: 688 K 688
           K
Sbjct: 705 K 705


>gi|331091706|ref|ZP_08340540.1| ribonuclease R [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403463|gb|EGG83022.1| ribonuclease R [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 731

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
           ++ ++      + + ++G +  +  +G +V      +GLVH++ +  +            
Sbjct: 636 KLKKAEYMESRIGETFEGVISSITKWGMYVELSNTIEGLVHVTNMYDDHYNYYEERYEMV 695

Query: 658 -AKTSDVVKEGDTVWVKLLDFDDRGK 682
              T+ V K G TV V++LD D   +
Sbjct: 696 GEHTNKVYKLGQTVNVRVLDVDKLQR 721


>gi|320589974|gb|EFX02430.1| rRNA biogenesis protein [Grosmannia clavigera kw1407]
          Length = 1753

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR-GKI 683
           G VV V+  GA+V F G   G + ++++S   +    +  ++G  V V++L FD    K+
Sbjct: 640 GTVVNVVPIGAYVQFYGDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVRVLRFDPDLNKL 699

Query: 684 KLSMKV 689
            +S K 
Sbjct: 700 VVSCKD 705



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 604 EAAREMIRSITDVPEVNKIYKGQVVKVM-----DFGAFVHFCGARDGLVHISQLSTERVA 658
           +   E      +   V  +  G + K++       G  V       GLV     S  ++ 
Sbjct: 525 QKVLEQSFIRIEDVPVGDVVTGHIKKLLLNQNGISGLIVEIADGIAGLVPEIHFSDIKLQ 584

Query: 659 KTSDVVKEGDTVWVKLLDFDDRG-KIKLSMKVVDQNTGKPIV 699
                 +EG  V  ++L  D    + +L++K    N+  P V
Sbjct: 585 HPEKKFREGMKVTARVLSIDPANHQFRLTLKKTLVNSDIPPV 626


>gi|253576031|ref|ZP_04853364.1| ribosomal protein S1 [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844606|gb|EES72621.1| ribosomal protein S1 [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 274

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 597 SSSLAEIEAAREMIRSITDVP-EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE 655
            + +A  +AA E +  +T    E + +    V  V      +   G     + + +    
Sbjct: 102 DTFIASRQAALEHMEGLTWKWLEQDAVITAVVRNVTPKVLMLDI-GGITTELPVQEYGYG 160

Query: 656 RVAKTSDVVKEGDTVWVKLLDFDDRGKI-KLSMKVVDQNTGKP 697
            V    + +  GD + VK+++ D   KI K+S K  +++    
Sbjct: 161 WVDDLREEISAGDHLKVKVVELDKENKIVKVSKKATEKSPWPD 203



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 30/184 (16%)

Query: 515 NIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI---PPDQIRNVIGMGG 571
           +  + + Q A      +  +  +  +     +   TP+V ++ I     +      G G 
Sbjct: 102 DTFIASRQAALEHMEGLTWKWLEQDAVITAVVRNVTPKVLMLDIGGITTELPVQEYGYG- 160

Query: 572 KVIRGIVEQTGAKVNIDDDGTVKIASSSLA-------EIEAAREMIRSITDVPEVNKIYK 624
                 V+    +++  D   VK+             +    +               YK
Sbjct: 161 -----WVDDLREEISAGDHLKVKVVELDKENKIVKVSKKATEKSPWPDCAKRYVSKGTYK 215

Query: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDR---- 680
           G+V  VM++G FV+     D LV   +            VK GDTV++++   D +    
Sbjct: 216 GKVSGVMEYGIFVNLERGVDALVPHIRFGK---------VKRGDTVYIRVRGVDPKQERI 266

Query: 681 -GKI 683
            G+I
Sbjct: 267 YGRI 270


>gi|167971122|ref|ZP_02553399.1| S1 RNA binding domain protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186701173|gb|EDU19455.1| S1 RNA binding domain protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 706

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 35/241 (14%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL-- 521
           +G+  +     +LS +SG         F+       I   +    I  I++ +   A   
Sbjct: 484 VGVDVNTASIPLLSKVSGLNKRSAKKIFEYVKKHQFIENREQLKTIPYITDKVFEQAAGF 543

Query: 522 -----QQAKRGRLHILNEMSKVLSE-------SRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
                      R  I  E   V++E          +L      +  +   P+++  ++  
Sbjct: 544 LRINNANNFLDRTSIHPEAYPVVNELCKYLQLPINKLINNYQVLNQL--NPNELTTILKT 601

Query: 570 GGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
               I  I+      + ++ DD  + I  S + +I              ++  + +G + 
Sbjct: 602 DIYTIENIINNLKNPLQDVRDDYDIPILRSQMVDINN-----------LKIGMLVQGTIR 650

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              +FG+F+      D L+HIS           D +     + V +   D    KI L +
Sbjct: 651 NQTEFGSFIDIGLKNDALLHISNYCE------EDNLHVNKNINVYIDKIDTITQKISLKL 704

Query: 688 K 688
           K
Sbjct: 705 K 705


>gi|157693783|ref|YP_001488245.1| ribonuclease R [Bacillus pumilus SAFR-032]
 gi|157682541|gb|ABV63685.1| ribonuclease R [Bacillus pumilus SAFR-032]
          Length = 780

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   S+       ++ ++   + ++ + + G +  V +FG FV      +GLVH+S ++ 
Sbjct: 603 MERRSVDAERETDDLKKAEFMLDKIGEEFDGMISSVTNFGLFVELPNTIEGLVHVSYMTD 662

Query: 655 ERV-----------AKTSDVVKEGDTVWVKLLDFDD 679
           +              +T +V + GD + VK+++ + 
Sbjct: 663 DYYRFDEQHFAMIGERTGNVYRIGDEITVKVVNVNK 698


>gi|157879132|ref|XP_001687392.1| elongation initiation factor 2 alpha subunit [Leishmania major
           strain Friedlin]
 gi|321438307|emb|CBZ12060.1| putative elongation initiation factor 2 alpha subunit [Leishmania
           major strain Friedlin]
          Length = 432

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
           +++   +  +P++N +   ++ +V D  A V     G R+G++  ++++  RV     ++
Sbjct: 137 KDIPFYVETMPKINDVVWVKITQVNDTSAVVQLLEYGKREGIIPYTEVTRRRVRSMGKLI 196

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K G T   +++  D D+G I LS K+V  N  K
Sbjct: 197 KVGRTEPAQVIRIDKDKGYIDLSKKLVTPNEAK 229


>gi|168185501|ref|ZP_02620136.1| ribonuclease R [Clostridium botulinum C str. Eklund]
 gi|169296470|gb|EDS78603.1| ribonuclease R [Clostridium botulinum C str. Eklund]
          Length = 745

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 553 VEIMAIPPDQIRNVI---GMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREM 609
              +   PD I + I    + G +    V+    KV+     +  +   ++       ++
Sbjct: 552 TSPIRRYPDLIIHRIIKESLDGLIDDKRVKSLENKVDYASVQSSDMERLAMEAEREVDDL 611

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------A 658
            ++     ++ + Y G V  V +FG FV      +GLVHIS +  +              
Sbjct: 612 KKAEYMSEKIGEEYTGIVSSVTNFGMFVQLPNTIEGLVHISTMDDDYYVYDEDHLCLVGE 671

Query: 659 KTSDVVKEGDTVWVKLLDFD 678
           K  +V + GD V +K+   D
Sbjct: 672 KHKNVYRLGDEVKIKVDRVD 691


>gi|85108995|ref|XP_962696.1| hypothetical protein NCU08026 [Neurospora crassa OR74A]
 gi|28924307|gb|EAA33460.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|39979134|emb|CAE85508.1| conserved hypothetical protein [Neurospora crassa]
          Length = 286

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 33/247 (13%)

Query: 305 TVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFI-----RGDTQAIVVVTL-GTRE 358
               +       R +  +R +  + G+     GS+         G +   +  ++ G R 
Sbjct: 24  EKQSEGFKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRA 83

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEV-SRMGAPSRREIGHGRLARRAIHPVLPQTA 417
                 S   +       H  F P AT +    +  P  R++G       A+   +    
Sbjct: 84  ---LPRSTPFSPHIILSTHVKFAPFATKQRRGYIRDPIERDLGT--HLETALRGSIIADR 138

Query: 418 QFPYTLRIVSEITESDG----------------SSSMATVCGSSLALMDAGVPISKPVAG 461
                + I+  I E +                 ++    +  +S AL DAG+     VAG
Sbjct: 139 WPKSGVDIIISIVEGEQDRETSKAQGIEAWDTMNALSGCITVASAALADAGIDCVDTVAG 198

Query: 462 IAMGLVKDGDD-----FIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENI 516
               LV+D  +      ++    S  E  L         T   +T +     +     ++
Sbjct: 199 GVAALVQDAGNDAAPSIVVDPIPSEHEKVLAACCIAYLPTRQEVTNLWFKGDLPASDMDV 258

Query: 517 MVMALQQ 523
               +++
Sbjct: 259 YTQLIEK 265


>gi|303231490|ref|ZP_07318220.1| ribonuclease R [Veillonella atypica ACS-049-V-Sch6]
 gi|302513833|gb|EFL55845.1| ribonuclease R [Veillonella atypica ACS-049-V-Sch6]
          Length = 779

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 22/221 (9%)

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           +    M  KV         + +D     + ++I+             I+   S   ++  
Sbjct: 471 EEKMSMYQKVLNYLGQDIRLHLDELEPRVFQHILDAVKGTDIEQVAQIMTLRSMQQAKYS 530

Query: 544 LQLGEFTPR--------VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +                   +   PD + + +                K    +   V  
Sbjct: 531 IDNAGHFGLASKCYTHFTSPIRRYPDLMVHRLLKADMGWPDGYAHRDTKTEFLERAAVHS 590

Query: 596 ASSSLAEIEAARE---MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +      + A R+   + ++   VP + ++++G++  +  FG FV      DGLVH++ +
Sbjct: 591 SEREQVAVAAERDTVDLKKTQYMVPFIGEVFEGKISSITSFGMFVELDNGIDGLVHMNMM 650

Query: 653 STERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
           + +              +T  +   GDTV V L+  D   +
Sbjct: 651 TDDYYFYDEEHFLLVGKRTGQIYHLGDTVTVTLVKADVEKR 691


>gi|255524714|ref|ZP_05391666.1| ribonuclease R [Clostridium carboxidivorans P7]
 gi|255511608|gb|EET87896.1| ribonuclease R [Clostridium carboxidivorans P7]
          Length = 722

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 548 EFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAR 607
              P + I  I  + I   I      I     +  +K + + +   + A   + +++ A 
Sbjct: 556 RRYPDLIIHRIIKEFINGQIDDKRNKILTADVEYASKQSSEMERVAQDAEREVEDLKKAE 615

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV---------- 657
            M   I         ++G +  V +FG FV      +GLVHIS L  +            
Sbjct: 616 YMSERIGQE------FEGIISSVTNFGMFVELPNTIEGLVHISSLDDDYYVYDEKHLSLI 669

Query: 658 -AKTSDVVKEGDTVWVKLLDFD 678
             +T ++ K GD   +K+   D
Sbjct: 670 GERTKNIYKLGDEAKIKVSKVD 691


>gi|254571745|ref|XP_002492982.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|238032780|emb|CAY70803.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|328353004|emb|CCA39402.1| Polyribonucleotide nucleotidyltransferase [Pichia pastoris CBS
           7435]
          Length = 221

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 30/220 (13%)

Query: 28  DGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE-SRPTE 86
           DG+   + GE  V+ +V      K  Q+  P     +             +R E    + 
Sbjct: 15  DGSSTISIGEVKVICSVTGPIEAKPRQE-LPTQCAIEVN-----------IRPEVGVGST 62

Query: 87  NEILISRMIDRSIRPLFSKC--YKNETQVIINVMQ---HDLESSPHVVS-MVAASAALML 140
            E  +   +   +    +K    +   QV ++++        +   + + +  A  AL+ 
Sbjct: 63  REKNMEDKLRVVLNGTINKFQYPRQLIQVHLHIISKSQATENNLKDLHACINGAYLALID 122

Query: 141 SGLPFEGPVVGAQVDYINGQYVLNPRLDEDQGSL--DLFV----SGTQDAVLMVELEANQ 194
           + +      +       + + + NP  ++ Q S+   L      SG  D +L V+    +
Sbjct: 123 ANISLLSSFLSTYAVINDDRLIFNPTSEQIQSSISHHLVCFDIKSGRADELLFVDSVG-E 181

Query: 195 LSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDS 234
            +E  ++  +     E    IE+++K+ +    E +  D 
Sbjct: 182 FTEGELMTVLDQSIEE----IESMNKIVRKTITEKVSRDY 217


>gi|118576156|ref|YP_875899.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
 gi|118194677|gb|ABK77595.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
          Length = 244

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 27/147 (18%)

Query: 553 VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA------- 605
           V+++ IPP      +      I  + E+  + +N D    + I  + + E+         
Sbjct: 36  VDVVRIPPSLFGTTLKKAAINI--LKEKYESMINADLGYIIMILDAKVEEMGKMIAGDGG 93

Query: 606 --AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV 663
              +    ++T  P++ +I +G++V + DFGAFV      D L+H+SQ+  + +   SDV
Sbjct: 94  TFHKVEFNALTFYPKLQEIIQGEIVDITDFGAFVRIGP-TDALLHLSQVMDDYLK--SDV 150

Query: 664 -------------VKEGDTVWVKLLDF 677
                        +K G T+  ++   
Sbjct: 151 KAGLIMANQSGRTLKVGSTIRARITAV 177


>gi|67078116|ref|YP_245736.1| hypothetical protein pE33L466_0241 [Bacillus cereus E33L]
 gi|66970422|gb|AAY60398.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 185

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHF--CGARDGLVHISQLSTERVAKTSDVVKEG 667
            +  TD+ + N     +V  V+ +G FV         GL+HI++     V +  D ++ G
Sbjct: 22  PKPYTDLYKKNTTVTVKVENVVKYGVFVQIQDENKGKGLLHITKFQNMYVKRIEDFLRIG 81

Query: 668 DTVW-VKLLDF--DDRGKIKLSMKVVDQNTGK 696
           D +  VK++D   D    + L +K+  + TGK
Sbjct: 82  DIIEDVKIIDVTQDSLSFLTLHLKIEQKYTGK 113


>gi|148642257|ref|YP_001272770.1| DNA-directed RNA polymerase subunit E' [Methanobrevibacter smithii
           ATCC 35061]
 gi|222444570|ref|ZP_03607085.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350890|ref|ZP_05976307.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
 gi|148551274|gb|ABQ86402.1| DNA-dependent RNA polymerase, subunit E, RpoE [Methanobrevibacter
           smithii ATCC 35061]
 gi|222434135|gb|EEE41300.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860228|gb|EFC92526.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
          Length = 185

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 586 NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
            I++ G  ++     A       +  +I   PE  ++  G+V+++ +FGAFV      DG
Sbjct: 47  EIEEIGEGRLIMGDGASYHN--VVFNAIFFKPEQQEVIDGEVIEIAEFGAFVRIGPM-DG 103

Query: 646 LVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDF------DDRGKIKLSMK 688
           LVH+SQ++ + +            +++  + EGD V  +++            KI L+M+
Sbjct: 104 LVHVSQVTDDYINYDSKRGALLAKESNKTLDEGDLVRTRIVAISLKDNSTKNTKIGLTMR 163

Query: 689 V 689
            
Sbjct: 164 Q 164


>gi|327462460|gb|EGF08785.1| S1 RNA binding domain protein [Streptococcus sanguinis SK1057]
          Length = 120

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLD 676
            ++    KG++  +  +GAFV       GL+HIS++    +    D VK G  V V+++D
Sbjct: 1   MKIGDKLKGEITGIQPYGAFVELENGTIGLIHISEIRPGYIENIHDSVKVGQQVLVQVVD 60

Query: 677 FDD-RGKIKLSMKVVDQN 693
           +D+  GK  LSM+ +++ 
Sbjct: 61  YDEFSGKSSLSMRTLEEE 78


>gi|23274283|gb|AAH38140.1| S1 RNA binding domain 1 [Mus musculus]
 gi|187955336|gb|AAI47431.1| Srbd1 protein [Mus musculus]
 gi|187955820|gb|AAI47430.1| Srbd1 protein [Mus musculus]
          Length = 280

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDV----VKEGDTVWVK 673
           +V  +  G+V     FG FV     + GL+ I  ++  +++KT       +  G+ V VK
Sbjct: 202 QVGTVLTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVK 261

Query: 674 LLDFD-DRGKIKLSM 687
           +L+ D  R +I L +
Sbjct: 262 VLNVDIPRSRISLDL 276


>gi|322487986|emb|CBZ23232.1| elongation initiation factor 2 alpha subunit,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 413

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
           +++   +  +P++N +   ++ +V D  A V     G R+G++  ++++  RV     ++
Sbjct: 118 KDIPFYVETMPKINDVVWVKITQVNDTSAVVQLLEYGKREGIIPYTEVTRRRVRSMGKLI 177

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K G T   +++  D D+G I LS K+V  N  K
Sbjct: 178 KVGRTEPAQVIRIDKDKGYIDLSKKLVTPNEAK 210


>gi|313891252|ref|ZP_07824870.1| ribonuclease R [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120319|gb|EFR43440.1| ribonuclease R [Streptococcus pseudoporcinus SPIN 20026]
          Length = 783

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-----STERV----- 657
            M ++      + + + G V  V+ FG FV      +GLVH++ L       ER      
Sbjct: 616 AMKKAEYMEEHIGETFDGIVSSVVKFGLFVELPNTIEGLVHVTSLPEYYNYNERTMTLQG 675

Query: 658 AKTSDVVKEGDTVWVKLLDFDD 679
            K+  V K G  + VKL+  D 
Sbjct: 676 EKSGKVFKVGQAIQVKLVKADK 697


>gi|167470896|ref|ZP_02335600.1| ribosomal protein S1 [Yersinia pestis FV-1]
          Length = 88

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK-IKLSMKVVDQNTGKP 697
             G  +G +   + + +RV   + V+  GD V  K    D + + I LS++  D+   K 
Sbjct: 1   MAGGVEGYLRAFEATRDRVEDATLVLNVGDEVEAKYTGVDRKNRVISLSVRAKDEADEKD 60

Query: 698 IV 699
            +
Sbjct: 61  AI 62


>gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
 gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
          Length = 306

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 26/160 (16%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGT 369
           + VR+D R     R  +  +G +   HGS+L   GDT  +  V L     E         
Sbjct: 37  ESVRIDARRLREARPTTIALGAVSSAHGSALVRLGDTAMLASVKL-----EVMSPPAEHP 91

Query: 370 QRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH------PVLPQTAQFPYT- 422
                 + ++  P  +  V        R      +  +A+        +L        T 
Sbjct: 92  DEGSVAVEFHMPPICSPLVRP-----GRSAEVAPVISKALEDVLMSSGMLNLKDLCLITG 146

Query: 423 -------LRIVSEITESDGSSSMATVCGSSLALMDAGVPI 455
                  L I      +DGS   A +  +  A     +P+
Sbjct: 147 KASWLAYLDIYC--LNADGSLFDAALISAVAAFTHLEIPL 184


>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
           DSM 4304]
 gi|29336575|sp|O29756|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
 gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
 gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
 gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
 gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
 gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
 gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
 gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 259

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 28/226 (12%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
             +  DI+   V + + D + R+DGR  +  R +     ++++  GS+L   GDTQ +V 
Sbjct: 3   EDILVDIKRDYVLSKLRDNE-RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVG 61

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
           V +   E   Y D+     R   +++   +P A+      G P    I   R+  R I  
Sbjct: 62  VKMQPGEP--YPDT---PDRGVIIVNAELVPLASPTFEP-GPPDENSIELARVVDRGIRE 115

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAG-- 461
                   ++ +  +  + + +     + DG+   A+   +  ALM+  VP  +   G  
Sbjct: 116 SEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED 175

Query: 462 ---------IAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDS 498
                    +++  +  G+ +  L D S +E  +G     +     
Sbjct: 176 YLLPVRDLPVSVTSLIVGNKY--LVDPSREEMSVGDTTLTITTDKD 219


>gi|322496267|emb|CBZ31339.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 413

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
           +++   +  +P++N +   ++ +V D  A V     G R+G++  ++++  RV     ++
Sbjct: 118 KDIPFYVETMPKINDVVWVKITQVNDTSAVVQLLEYGKREGIIPYTEVTRRRVRSMGKLI 177

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K G T   +++  D D+G I LS K+V  N  K
Sbjct: 178 KVGRTEPAQVIRIDKDKGYIDLSKKLVTPNEAK 210


>gi|161528743|ref|YP_001582569.1| DNA-directed RNA polymerase subunit E' [Nitrosopumilus maritimus
           SCM1]
 gi|160340044|gb|ABX13131.1| DNA-directed RNA polymerase [Nitrosopumilus maritimus SCM1]
          Length = 198

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 27/154 (17%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEA 605
           +   +  V+++ IPP      +      I  + E+  + +N D    + I  + + E+  
Sbjct: 1   MFSISTLVDVVRIPPSLFGTTLKKAAVNI--LKEKYESMINADLGYIIMILDAKVDEMGK 58

Query: 606 ---------AREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
                     R    ++T  P++ +I +G++V + DFGAFV      D L+H+SQ+  + 
Sbjct: 59  MIAGDGGTFHRVQFEALTFYPKLQEIVQGEIVDITDFGAFVRIGP-TDALLHLSQVMDDY 117

Query: 657 VAKTSDV-------------VKEGDTVWVKLLDF 677
           +   SDV             +K G T+  ++   
Sbjct: 118 LK--SDVKSGMILANQSGRTLKVGSTLRARITAV 149


>gi|169826077|ref|YP_001696235.1| ribonuclease R [Lysinibacillus sphaericus C3-41]
 gi|168990565|gb|ACA38105.1| Ribonuclease R [Lysinibacillus sphaericus C3-41]
          Length = 829

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 22/131 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D  R  +   G  +  I + T      + +     A      ++ A+ M        
Sbjct: 585 INKDTSRETVAQWGMAMDEIADHTS-----ERERRAVDAERDTDALKKAQYMSD------ 633

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKE 666
           ++ + ++G V  + +FG FV      +GLVHIS ++ +              +T+   + 
Sbjct: 634 KIGEEFEGIVSSITNFGIFVELPNTIEGLVHISNMTDDYYRFDDRQMIMIGERTNRQFRI 693

Query: 667 GDTVWVKLLDF 677
           GD V V++ + 
Sbjct: 694 GDEVTVRVANV 704


>gi|146075993|ref|XP_001462826.1| elongation initiation factor 2 alpha subunit [Leishmania infantum
           JPCM5]
 gi|134066906|emb|CAM60047.1| putative elongation initiation factor 2 alpha subunit [Leishmania
           infantum JPCM5]
          Length = 413

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
           +++   +  +P++N +   ++ +V D  A V     G R+G++  ++++  RV     ++
Sbjct: 118 KDIPFYVETMPKINDVVWVKITQVNDTSAVVQLLEYGKREGIIPYTEVTRRRVRSMGKLI 177

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K G T   +++  D D+G I LS K+V  N  K
Sbjct: 178 KVGRTEPAQVIRIDKDKGYIDLSKKLVTPNEAK 210


>gi|284165987|ref|YP_003404266.1| nucleic acid binding OB-fold tRNA/helicase-type [Haloterrigena
           turkmenica DSM 5511]
 gi|284015642|gb|ADB61593.1| nucleic acid binding OB-fold tRNA/helicase-type [Haloterrigena
           turkmenica DSM 5511]
          Length = 735

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 592 TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQ 651
           TV        E +A  E   +        + Y+G V    DFG FV       GL+H S+
Sbjct: 10  TVDGEICESHEEDAVFEFRGTSASELTPGRYYRGVVDGYADFGVFVDIGDHVTGLLHRSE 69

Query: 652 LSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKL 685
           L   R+       + GD V+V++LD  D G + L
Sbjct: 70  LD-RRLESLD--WESGDEVFVQVLDVRDNGNVDL 100


>gi|229825254|ref|ZP_04451323.1| hypothetical protein GCWU000182_00607 [Abiotrophia defectiva ATCC
           49176]
 gi|229790626|gb|EEP26740.1| hypothetical protein GCWU000182_00607 [Abiotrophia defectiva ATCC
           49176]
          Length = 283

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 91/237 (38%), Gaps = 40/237 (16%)

Query: 463 AMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQ 522
            + +VK  D  + L+DI   ++    +  +V    + +T    D    G    + +    
Sbjct: 8   TLVVVKKTDFGLYLTDIEKKDNKNRDVKDEVLLPKNQVT----DDMKPGSEIEVFLY--- 60

Query: 523 QAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGI----- 577
                            SE R+   +  P +++  I   +++ V  +G  +  G+     
Sbjct: 61  ---------------KDSEDRMIATKIEPLIKVGEIKKLKVKEVTKIGAFLDWGLPKDLL 105

Query: 578 --VEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNK--IYKGQVVKVMD- 632
              ++    +   DD  V +       + A  ++   ++ +P   K  + KG V ++ + 
Sbjct: 106 LPFKEQIYDIKAGDDILVTMYVDLSDRLCATMDLYSRLSLLPPYRKDDMVKGTVYQIHEQ 165

Query: 633 FGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           FGA+V        LV   +L  E        +K GD +  ++L+  + GK+ LS++ 
Sbjct: 166 FGAYVAVDNKYSALVPKKELHKE--------LKAGDEIEARVLEVKEDGKLDLSLRQ 214


>gi|154499641|ref|ZP_02037679.1| hypothetical protein BACCAP_03298 [Bacteroides capillosus ATCC
           29799]
 gi|150271239|gb|EDM98496.1| hypothetical protein BACCAP_03298 [Bacteroides capillosus ATCC
           29799]
          Length = 509

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 587 IDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKG-----QVVKVMDFGAFVHFCG 641
           ID +  V  AS   A     RE     TD     +IY+G     +V+ V+  G FV   G
Sbjct: 318 IDQEHNVVAASRLEAMALKRREYY-FRTDRDGNYQIYEGIRAEARVISVIRAGIFVDLFG 376

Query: 642 ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD----RGKIKLSMKVVDQNT 694
           A +  + + +LS +R    +   + G  V V++L+ D     R ++  S+K   +N 
Sbjct: 377 A-ECYIPLRELSYQRWVDAAQHYQPGQRVLVRVLEVDRSDRSRPRVTASVKQAMENP 432


>gi|293400426|ref|ZP_06644572.1| ribonuclease R [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306826|gb|EFE48069.1| ribonuclease R [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 705

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV--- 657
               A  +M ++      + + + G +  +  FG FV      +GLVHIS +  +     
Sbjct: 597 DAERAVDDMKKAEYMENYIGQRFAGVISGITKFGMFVELDNTVEGLVHISSMEDDYYHYD 656

Query: 658 --------AKTSDVVKEGDTVWVKLLDFDDRGK 682
                     T++V + G  V V+ +D +   +
Sbjct: 657 EVSHSLIGEHTANVYRMGQKVQVRCIDANRFKR 689


>gi|119471827|ref|ZP_01614160.1| RNase R, 3'-5' exoribonuclease [Alteromonadales bacterium TW-7]
 gi|119445317|gb|EAW26606.1| RNase R, 3'-5' exoribonuclease [Alteromonadales bacterium TW-7]
          Length = 813

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 563 IRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKI 622
           I+ V+   G+   G    T  +V+   +        +        + ++       V   
Sbjct: 583 IKAVLKAQGQQTSGAYAYTDDEVDQLGEQCSTTERRADDATREVADWLKCEFMQDHVGDE 642

Query: 623 YKGQVVKVMDFGAFVHFCGAR-DGLVHISQLSTERV-----------AKTSDVVKEGDTV 670
           + G +  V +FG F+     + DGL+H++ L  E               +  V + GD V
Sbjct: 643 FNGVISSVTNFGLFIRLDDLQIDGLIHVTNLGDEFFAHDAAKHCLIGEHSHTVYRLGDKV 702

Query: 671 WVKLLDF--DDRGKIKLSMK-VVDQN 693
            V++     DDR +I L +K  V Q+
Sbjct: 703 TVQVASVSLDDR-RINLVLKGDVAQD 727


>gi|154331723|ref|XP_001561679.1| elongation initiation factor 2 alpha subunit [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134058998|emb|CAM36825.1| putative elongation initiation factor 2 alpha subunit [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 413

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
           +++   +  +P++N +   ++ +V D  A V     G R+G++  ++++  RV     ++
Sbjct: 118 KDIPFYVETMPKINDVVWVKITQVNDTSAVVQLLEYGKREGIIPYTEVTRRRVRSMGKLI 177

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K G T   +++  D D+G I LS K+V  N  K
Sbjct: 178 KVGRTEPAQVIRIDTDKGYIDLSKKLVTPNEAK 210


>gi|261403651|ref|YP_003247875.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370644|gb|ACX73393.1| phosphoesterase RecJ domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 763

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 557 AIPPDQIRNVIGMGGKVIRGIVEQTGAKV----NIDDDGTVKIASSSLAEIEAAREMIR- 611
            IP  +  +  G  GKV++   ++ GA +    +  D            E +     +  
Sbjct: 65  KIPIYEKCDFCGGSGKVVK--CDKCGAIIGKYPDFKDRTLCDKCLKEEEERKKGLRNVYV 122

Query: 612 ----SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
               +     E  K YKG V ++  +GAF++      GL+    + + R+      +  G
Sbjct: 123 FDELATIYDVEPGKFYKGTVTRIEKYGAFINLNDQVRGLLRPRDMISLRLEN----LNVG 178

Query: 668 DTVWVKLLDFDDRGK 682
           D + V+ +D     +
Sbjct: 179 DEIIVQAMDVRPEKR 193


>gi|326803684|ref|YP_004321502.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650281|gb|AEA00464.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
          Length = 774

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 579 EQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638
           ++    + +  D   K    S+        + ++   V +V + + G +  V  FG FV 
Sbjct: 596 DELSQNIEVTADQASKTERRSVDAERETESLKKTEFMVDKVGEEFDGIISSVTKFGIFVQ 655

Query: 639 FCGARDGLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
                +GLVHIS L  +               T ++ + GD V VKL+  D   +
Sbjct: 656 LANTVEGLVHISNLDDDYYNYVDKHMILVGEHTGNIYRIGDPVRVKLVKADTDSR 710


>gi|322709903|gb|EFZ01478.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 283

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 64/215 (29%), Gaps = 33/215 (15%)

Query: 317 RDSETVRDISAQVGLLQRTHGSSLFI------RGDTQAIVVVTLGTREDEQYVDSLSGTQ 370
           R++  VR    + G+     GS+          G          G R       S   + 
Sbjct: 31  RNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGMKFTCTVHGPRS---LPRSAPFSP 87

Query: 371 RNDFMMHYNFLPCATGEVSR-MGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEI 429
                 H  + P AT +    +   S R++        A+   +         + +V  I
Sbjct: 88  HMVISTHVKYAPFATRQRKGYLRDASERDLSI--HLETALRGAVIADRWPKSGVEVVVTI 145

Query: 430 TESDGS----------------SSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD---G 470
            E D S                     +  +S A+ DAG+      AG    LV+D   G
Sbjct: 146 VEGDVSRQTTIDEGHEEWNTMSILSGCITVASAAIADAGIDSVDVAAGGVAALVQDEGIG 205

Query: 471 DDFIILSDISGDEDH--LGHMDFKVAGTDSGITAM 503
            + +++ D S  E    L             IT +
Sbjct: 206 KEPVLVMDPSVSEHKTILAACCVAYLPARDEITNL 240


>gi|296412695|ref|XP_002836057.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629859|emb|CAZ80214.1| unnamed protein product [Tuber melanosporum]
          Length = 1070

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
            G +VK++  GA V F     G + +S++    +    +    G +V V +L  D    K
Sbjct: 614 VGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEHSTVGQSVNVHVLSVDPASQK 673

Query: 683 IKLSMKV 689
           +++S K 
Sbjct: 674 LRVSCKD 680



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 613 ITDVPEVNKIYKGQVVKVMDFG-AFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVW 671
                ++ ++ KG + +V+  G   V+      G+V    LS  ++       +EG  V 
Sbjct: 513 RVKDIKIGEVVKGTIDRVLHSGRVIVNLAEGITGIVDELHLSDVKLKHPEKKFREGVEVK 572

Query: 672 VKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
            ++L  D  + K++L +K    N+  PI+
Sbjct: 573 ARVLLTDPPKRKVRLILKKAIVNSDAPII 601


>gi|293363660|ref|ZP_06610410.1| S1 RNA binding domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552767|gb|EFF41527.1| S1 RNA binding domain protein [Mycoplasma alligatoris A21JP2]
          Length = 698

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 17/212 (8%)

Query: 475 ILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNE 534
           IL+ ISG    +     +    ++         K+ G+       A+     G L I N 
Sbjct: 493 ILTHISGLSSKIADNILEYRKENNEFKNRLELKKVKGLGPKSFEQAV-----GFLRIFNS 547

Query: 535 MS-KVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNID---DD 590
            +    +    +      ++       D  +NV     KV + I +    K  I+   + 
Sbjct: 548 NNFLDKTNIHPENYSLANKIIA-EYDYDVEKNVFNKEPKVDQLINDYKSDKYTIELILES 606

Query: 591 GTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
                      +     ++     +  +VN+ Y+G+++ + DFG F+         VH S
Sbjct: 607 LKNPTRDIRDNKKGFKIDLDLKDINDLKVNETYEGRILNITDFGIFIFIGIKDSVFVHKS 666

Query: 651 QLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           + + + V         G  V VK+L+ D   K
Sbjct: 667 KYNNQEVL-------LGKDVKVKILNIDKDNK 691


>gi|15616115|ref|NP_244420.1| ribonuclease R [Bacillus halodurans C-125]
 gi|10176177|dbj|BAB07272.1| ribonuclease R [Bacillus halodurans C-125]
          Length = 771

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++       ++ ++     ++ + + G +  V +FG FV      +GLVH+S L+ 
Sbjct: 602 MERRAVDAERETDDVKKAQFMEDKIGETFTGIISGVTNFGIFVELENTIEGLVHVSYLTD 661

Query: 655 ERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           +              ++ +V + GD + V++++ +
Sbjct: 662 DYYRYDEKHYAMIGERSGNVFRIGDEIEVRVINVN 696


>gi|168282058|ref|ZP_02689725.1| S1 RNA binding domain protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182676138|gb|EDT88043.1| S1 RNA binding domain protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 706

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 35/241 (14%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL-- 521
           +G+  +     +LS +SG         F+       I   +    I  I++ +   A   
Sbjct: 484 VGVDVNTASIPLLSKVSGLNKRSAKKIFEYVKKHQFIENREQLKTIPYITDKVFEQAAGF 543

Query: 522 -----QQAKRGRLHILNEMSKVLSE-------SRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
                      R  I  E   V++E          +L      +  +   P+++  ++  
Sbjct: 544 LRINNANNFLDRTSIHPEAYLVVNELCKYLQLPINKLINNYQVLNQL--NPNELTTILKT 601

Query: 570 GGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
               I  I+      + ++ DD  + I  S + +I              ++  + +G + 
Sbjct: 602 DIYTIENIINNLKNPLQDVRDDYDIPILRSQMVDINN-----------LKIGMLVQGTIR 650

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              +FG+F+      D L+HIS           D +     + V +   D    KI L +
Sbjct: 651 NQTEFGSFIDIGLKNDALLHISNYCE------EDNLHVNKNINVYIDKIDTITQKISLKL 704

Query: 688 K 688
           K
Sbjct: 705 K 705


>gi|13357585|ref|NP_077859.1| hypothetical protein UU029 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762282|ref|YP_001752109.1| S1 RNA-binding domain-containing protein [Ureaplasma parvum serovar
           3 str. ATCC 27815]
 gi|11278677|pir||G82943 hypothetical UU029 [imported] - Ureaplasma urealyticum
 gi|6898975|gb|AAF30434.1|AE002102_8 hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827859|gb|ACA33121.1| S1 RNA binding domain protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 706

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 35/241 (14%)

Query: 464 MGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMAL-- 521
           +G+  +     +LS +SG         F+       I   +    I  I++ +   A   
Sbjct: 484 VGVDVNTASIPLLSKVSGLNKRSAKKIFEYVKKHQFIENREQLKTIPYITDKVFEQAAGF 543

Query: 522 -----QQAKRGRLHILNEMSKVLSE-------SRLQLGEFTPRVEIMAIPPDQIRNVIGM 569
                      R  I  E   V++E          +L      +  +   P+++  ++  
Sbjct: 544 LRINNANNFLDRTSIHPEAYLVVNELCKYLQLPINKLINNYQVLNQL--NPNELTTILKT 601

Query: 570 GGKVIRGIVEQTGAKV-NIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVV 628
               I  I+      + ++ DD  + I  S + +I              ++  + +G + 
Sbjct: 602 DIYTIENIINNLKNPLQDVRDDYDIPILRSQMVDINN-----------LKIGMLVQGTIR 650

Query: 629 KVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSM 687
              +FG+F+      D L+HIS           D +     + V +   D    KI L +
Sbjct: 651 NQTEFGSFIDIGLKNDALLHISNYCE------EDNLHVNKNINVYIDKIDTITQKISLKL 704

Query: 688 K 688
           K
Sbjct: 705 K 705


>gi|224001130|ref|XP_002290237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973659|gb|EED91989.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 145

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 3/144 (2%)

Query: 313 RMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRN 372
           R   R   T+R +SA++  L R  GS+    G+T  + V   G       +       R 
Sbjct: 5   RPSQRKPTTLRPLSAELSPLHRADGSASLKCGNTHIM-VAIHGPI--APRISHREKYDRA 61

Query: 373 DFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432
              + ++         +  G  S   + H      A+   +         +++V +I ++
Sbjct: 62  VVNVAFSKGLMMMAGSAAGGGSSGDVVEHDTADGDALSSCIMLEKYPRCVIQVVIQIVQA 121

Query: 433 DGSSSMATVCGSSLALMDAGVPIS 456
           DGS   +    + +ALMDAGV + 
Sbjct: 122 DGSVLGSATNCAVMALMDAGVAMR 145


>gi|92113716|ref|YP_573644.1| ribonuclease E [Chromohalobacter salexigens DSM 3043]
 gi|91796806|gb|ABE58945.1| RNAse E [Chromohalobacter salexigens DSM 3043]
          Length = 1175

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAK-------TS 661
            S     +   IY+G++ ++      AFV F   R G + + ++S E   K         
Sbjct: 30  ESGAREQKKANIYRGRITRIEPSLEAAFVDFGAERHGFLPLKEISREYFTKEPSGRPNIK 89

Query: 662 DVVKEGDTVWVKLLDFDDRG 681
           +V+KEG  V V++ D ++RG
Sbjct: 90  EVLKEGQEVIVQV-DKEERG 108


>gi|241949175|ref|XP_002417310.1| eIF-2-alpha, putative; translation inititaion factor eIF2, alpha
           subunit, putative [Candida dubliniensis CD36]
 gi|223640648|emb|CAX44943.1| eIF-2-alpha, putative [Candida dubliniensis CD36]
          Length = 300

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEG-DTVWVK 673
           PEV+++    V ++ + GA+V        +G+V +S+LS  R+     +++ G + V V 
Sbjct: 14  PEVDEVVMVNVQEIAEMGAYVKLLEYDNIEGMVLLSELSRRRIRSIQKLIRVGKNEVAV- 72

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +L  D ++G I LS KVV   + + IV
Sbjct: 73  VLRVDKEKGYIDLSKKVV---SAEDIV 96


>gi|15668573|ref|NP_247371.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500642|sp|Q57840|RPOE1_METJA RecName: Full=DNA-directed RNA polymerase subunit E'
 gi|17943304|pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
           Polymerase Ii Rpb4RPB7 COMPLEX
 gi|17943306|pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
           Polymerase Ii Rpb4RPB7 COMPLEX
 gi|1591102|gb|AAB98387.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 187

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 20/122 (16%)

Query: 585 VNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARD 644
           V++ D G  K+     +       +  ++  +PE+ ++ +G+VV V++FG+FV      D
Sbjct: 49  VDVKDIGEGKVVHGDGSAYH--PVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGP-LD 105

Query: 645 GLVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD-----DRG-KIKLSM 687
           GL+H+SQ+  + V            +T  V++ GD V  +++         RG KI L+M
Sbjct: 106 GLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKIALTM 165

Query: 688 KV 689
           + 
Sbjct: 166 RQ 167


>gi|68474188|ref|XP_718803.1| likely translation initiation factor eIF2 alpha subunit [Candida
           albicans SC5314]
 gi|68474361|ref|XP_718720.1| likely translation initiation factor eIF2 alpha subunit [Candida
           albicans SC5314]
 gi|46440504|gb|EAK99809.1| likely translation initiation factor eIF2 alpha subunit [Candida
           albicans SC5314]
 gi|46440592|gb|EAK99896.1| likely translation initiation factor eIF2 alpha subunit [Candida
           albicans SC5314]
 gi|238878870|gb|EEQ42508.1| eukaryotic translation initiation factor 2 alpha subunit [Candida
           albicans WO-1]
          Length = 300

 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEG-DTVWVK 673
           PEV+++    V ++ + GA+V        +G+V +S+LS  R+     +++ G + V V 
Sbjct: 14  PEVDEVVMVNVQEIAEMGAYVKLLEYDNIEGMVLLSELSRRRIRSIQKLIRVGKNEVAV- 72

Query: 674 LLDFD-DRGKIKLSMKVVDQNTGKPIV 699
           +L  D ++G I LS KVV   + + IV
Sbjct: 73  VLRVDKEKGYIDLSKKVV---SAEDIV 96


>gi|299929223|gb|ADJ58023.1| elongation initiation factor 2 alpha subunit [Leishmania killicki]
 gi|299929237|gb|ADJ58030.1| elongation initiation factor 2 alpha subunit [Leishmania killicki]
 gi|299929251|gb|ADJ58037.1| elongation initiation factor 2 alpha subunit [Leishmania killicki]
          Length = 250

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
           +++   +  +P++N +   ++ +V D  A V     G R+G++  ++++  RV     ++
Sbjct: 44  KDIPFYVETMPKINDVVWVKITQVNDTSAVVQLLEYGKREGIIPYTEVTRRRVRSMGKLI 103

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K G T   +++  D D+G I LS K+V  N  K
Sbjct: 104 KVGRTEPAQVIRIDKDKGYIDLSKKLVTPNEAK 136


>gi|218658235|ref|ZP_03514165.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli IE4771]
          Length = 41

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 669 TVWVKLLDFDDRGKIKLSMKVVDQNTGKPIV 699
            VWVKLL FD+RGK++LSMKVVDQ TG+ I 
Sbjct: 1   KVWVKLLGFDERGKVRLSMKVVDQATGQEIA 31


>gi|313636432|gb|EFS02190.1| ribonuclease R [Listeria seeligeri FSL S4-171]
          Length = 631

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 416 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 464

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 465 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 524

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 525 GDEVEVEVTKVD 536


>gi|195636336|gb|ACG37636.1| exosome complex exonuclease RRP42 [Zea mays]
          Length = 287

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 26/215 (12%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   +R  +    VR DGR     R +S Q G++ + +GS+    G T+ I  V     +
Sbjct: 8   EKHFIRGGIAQD-VRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASV-----K 61

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS-----------RREIGHGRL--- 404
            E    S+    +    +  +  P  T E    G  S           +R +  G+    
Sbjct: 62  AELGKPSILHPDKGKVAIFVDCSP--TAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAG 119

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A   +  ++    +  + L I   +  SDG+   A      +AL D G+P       +++
Sbjct: 120 AAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVN----VSV 175

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
               D +  + +SD    +     +   +  T  G
Sbjct: 176 SAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVG 210


>gi|194707850|gb|ACF88009.1| unknown [Zea mays]
 gi|223975603|gb|ACN31989.1| unknown [Zea mays]
          Length = 287

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 26/215 (12%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTRE 358
           +   +R  +    VR DGR     R +S Q G++ + +GS+    G T+ I  V     +
Sbjct: 8   EKHFIRGGIAQD-VRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASV-----K 61

Query: 359 DEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPS-----------RREIGHGRL--- 404
            E    S+    +    +  +  P  T E    G  S           +R +  G+    
Sbjct: 62  AELGKPSILHPDKGKVAIFVDCSP--TAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAG 119

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A   +  ++    +  + L I   +  SDG+   A      +AL D G+P       +++
Sbjct: 120 AAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVN----VSV 175

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
               D +  + +SD    +     +   +  T  G
Sbjct: 176 SAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVG 210


>gi|195054140|ref|XP_001993984.1| GH18032 [Drosophila grimshawi]
 gi|193895854|gb|EDV94720.1| GH18032 [Drosophila grimshawi]
          Length = 902

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           +  +  G V  V  FGAFV     RDGL+H + ++          +  GD +   ++  D
Sbjct: 824 MGDVVTGAVTNVTHFGAFVDVGVERDGLIHRNHMNNSE-------LSIGDRIVASVIKVD 876

Query: 679 DRGKIKLSMKVVD 691
            + +  L +++ +
Sbjct: 877 MQRR-NLGLRLEN 888


>gi|315168607|gb|EFU12624.1| ribonuclease R [Enterococcus faecalis TX1341]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|307276864|ref|ZP_07557975.1| ribonuclease R [Enterococcus faecalis TX2134]
 gi|306506501|gb|EFM75660.1| ribonuclease R [Enterococcus faecalis TX2134]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|257421800|ref|ZP_05598790.1| ribonuclease R [Enterococcus faecalis X98]
 gi|257163624|gb|EEU93584.1| ribonuclease R [Enterococcus faecalis X98]
 gi|315155498|gb|EFT99514.1| ribonuclease R [Enterococcus faecalis TX0043]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|256853927|ref|ZP_05559292.1| ribonuclease R [Enterococcus faecalis T8]
 gi|307290370|ref|ZP_07570285.1| ribonuclease R [Enterococcus faecalis TX0411]
 gi|256710870|gb|EEU25913.1| ribonuclease R [Enterococcus faecalis T8]
 gi|306498563|gb|EFM68065.1| ribonuclease R [Enterococcus faecalis TX0411]
 gi|315030327|gb|EFT42259.1| ribonuclease R [Enterococcus faecalis TX4000]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|229545015|ref|ZP_04433740.1| ribonuclease R [Enterococcus faecalis TX1322]
 gi|229549259|ref|ZP_04437984.1| ribonuclease R [Enterococcus faecalis ATCC 29200]
 gi|255971972|ref|ZP_05422558.1| 3'-5' exoribonuclease [Enterococcus faecalis T1]
 gi|256616871|ref|ZP_05473717.1| 3'-5' exoribonuclease [Enterococcus faecalis ATCC 4200]
 gi|256763254|ref|ZP_05503834.1| 3'-5' exoribonuclease [Enterococcus faecalis T3]
 gi|256957855|ref|ZP_05562026.1| 3'-5' exoribonuclease [Enterococcus faecalis DS5]
 gi|256963735|ref|ZP_05567906.1| 3'-5' exoribonuclease [Enterococcus faecalis HIP11704]
 gi|257079793|ref|ZP_05574154.1| 3'-5' exoribonuclease [Enterococcus faecalis JH1]
 gi|257084403|ref|ZP_05578764.1| 3'-5' exoribonuclease [Enterococcus faecalis Fly1]
 gi|257087598|ref|ZP_05581959.1| 3'-5' exoribonuclease [Enterococcus faecalis D6]
 gi|257090757|ref|ZP_05585118.1| 3'-5' exoribonuclease [Enterococcus faecalis CH188]
 gi|257416805|ref|ZP_05593799.1| 3'-5' exoribonuclease [Enterococcus faecalis AR01/DG]
 gi|294781384|ref|ZP_06746726.1| ribonuclease R [Enterococcus faecalis PC1.1]
 gi|300860892|ref|ZP_07106979.1| ribonuclease R [Enterococcus faecalis TUSoD Ef11]
 gi|307270668|ref|ZP_07551959.1| ribonuclease R [Enterococcus faecalis TX4248]
 gi|307271682|ref|ZP_07552953.1| ribonuclease R [Enterococcus faecalis TX0855]
 gi|307287559|ref|ZP_07567602.1| ribonuclease R [Enterococcus faecalis TX0109]
 gi|312899990|ref|ZP_07759308.1| ribonuclease R [Enterococcus faecalis TX0470]
 gi|312902387|ref|ZP_07761593.1| ribonuclease R [Enterococcus faecalis TX0635]
 gi|312953647|ref|ZP_07772484.1| ribonuclease R [Enterococcus faecalis TX0102]
 gi|229305496|gb|EEN71492.1| ribonuclease R [Enterococcus faecalis ATCC 29200]
 gi|229309907|gb|EEN75894.1| ribonuclease R [Enterococcus faecalis TX1322]
 gi|255962990|gb|EET95466.1| 3'-5' exoribonuclease [Enterococcus faecalis T1]
 gi|256596398|gb|EEU15574.1| 3'-5' exoribonuclease [Enterococcus faecalis ATCC 4200]
 gi|256684505|gb|EEU24200.1| 3'-5' exoribonuclease [Enterococcus faecalis T3]
 gi|256948351|gb|EEU64983.1| 3'-5' exoribonuclease [Enterococcus faecalis DS5]
 gi|256954231|gb|EEU70863.1| 3'-5' exoribonuclease [Enterococcus faecalis HIP11704]
 gi|256987823|gb|EEU75125.1| 3'-5' exoribonuclease [Enterococcus faecalis JH1]
 gi|256992433|gb|EEU79735.1| 3'-5' exoribonuclease [Enterococcus faecalis Fly1]
 gi|256995628|gb|EEU82930.1| 3'-5' exoribonuclease [Enterococcus faecalis D6]
 gi|256999569|gb|EEU86089.1| 3'-5' exoribonuclease [Enterococcus faecalis CH188]
 gi|257158633|gb|EEU88593.1| 3'-5' exoribonuclease [Enterococcus faecalis ARO1/DG]
 gi|294451511|gb|EFG19971.1| ribonuclease R [Enterococcus faecalis PC1.1]
 gi|300849931|gb|EFK77681.1| ribonuclease R [Enterococcus faecalis TUSoD Ef11]
 gi|306501297|gb|EFM70600.1| ribonuclease R [Enterococcus faecalis TX0109]
 gi|306511560|gb|EFM80559.1| ribonuclease R [Enterococcus faecalis TX0855]
 gi|306512978|gb|EFM81619.1| ribonuclease R [Enterococcus faecalis TX4248]
 gi|310628485|gb|EFQ11768.1| ribonuclease R [Enterococcus faecalis TX0102]
 gi|310634057|gb|EFQ17340.1| ribonuclease R [Enterococcus faecalis TX0635]
 gi|311292986|gb|EFQ71542.1| ribonuclease R [Enterococcus faecalis TX0470]
 gi|315025244|gb|EFT37176.1| ribonuclease R [Enterococcus faecalis TX2137]
 gi|315032749|gb|EFT44681.1| ribonuclease R [Enterococcus faecalis TX0017]
 gi|315035793|gb|EFT47725.1| ribonuclease R [Enterococcus faecalis TX0027]
 gi|315143752|gb|EFT87768.1| ribonuclease R [Enterococcus faecalis TX2141]
 gi|315150000|gb|EFT94016.1| ribonuclease R [Enterococcus faecalis TX0012]
 gi|315151914|gb|EFT95930.1| ribonuclease R [Enterococcus faecalis TX0031]
 gi|315159205|gb|EFU03222.1| ribonuclease R [Enterococcus faecalis TX0312]
 gi|315162856|gb|EFU06873.1| ribonuclease R [Enterococcus faecalis TX0645]
 gi|315164956|gb|EFU08973.1| ribonuclease R [Enterococcus faecalis TX1302]
 gi|315170134|gb|EFU14151.1| ribonuclease R [Enterococcus faecalis TX1342]
 gi|315173367|gb|EFU17384.1| ribonuclease R [Enterococcus faecalis TX1346]
 gi|323481552|gb|ADX80991.1| ribonuclease R [Enterococcus faecalis 62]
 gi|327535847|gb|AEA94681.1| ribonuclease R [Enterococcus faecalis OG1RF]
 gi|329578100|gb|EGG59512.1| ribonuclease R [Enterococcus faecalis TX1467]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|170291152|ref|YP_001737968.1| translation initiation factor 2, alpha subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170175232|gb|ACB08285.1| translation initiation factor 2, alpha subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 266

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           P+ N +    V  V + G  V        +  +  S +++ R+    D VKEGD V  ++
Sbjct: 7   PKRNDLVVATVKSVEEHGVTVSLDEYDGLEAYIPRSHVASGRIKDIRDFVKEGDKVVGRV 66

Query: 675 LDFDDR-GKIKLSMKVVDQNTGKP 697
           +  D + G++ LS++ V +   + 
Sbjct: 67  IRADKKLGQVDLSLRYVSETERRE 90


>gi|148242687|ref|YP_001227844.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
 gi|147850997|emb|CAK28491.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
          Length = 397

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDF 677
           EV ++  G V  V  +G FV   G   GL+H S ++   + +  ++   GD++   + + 
Sbjct: 288 EVGQLVSGLVTSVKPYGFFVDL-GGVSGLLHHSCITGGTMRELREIFDSGDSLQALITEL 346

Query: 678 DD-RGKIKLSMKVVDQNTGKPIV 699
           D  RG+I L+  +++   G+ ++
Sbjct: 347 DPGRGRIGLNTALLENQPGELLI 369


>gi|29377102|ref|NP_816256.1| ribonuclease R [Enterococcus faecalis V583]
 gi|227554112|ref|ZP_03984159.1| ribonuclease R [Enterococcus faecalis HH22]
 gi|29344568|gb|AAO82326.1| ribonuclease R [Enterococcus faecalis V583]
 gi|227176738|gb|EEI57710.1| ribonuclease R [Enterococcus faecalis HH22]
 gi|315576220|gb|EFU88411.1| ribonuclease R [Enterococcus faecalis TX0309B]
 gi|315582936|gb|EFU95127.1| ribonuclease R [Enterococcus faecalis TX0309A]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|295113594|emb|CBL32231.1| RNAse R [Enterococcus sp. 7L76]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|257420021|ref|ZP_05597015.1| 3'-5' exoribonuclease [Enterococcus faecalis T11]
 gi|257161849|gb|EEU91809.1| 3'-5' exoribonuclease [Enterococcus faecalis T11]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|256961146|ref|ZP_05565317.1| 3'-5' exoribonuclease [Enterococcus faecalis Merz96]
 gi|293384092|ref|ZP_06629986.1| ribonuclease R [Enterococcus faecalis R712]
 gi|293386907|ref|ZP_06631476.1| ribonuclease R [Enterococcus faecalis S613]
 gi|312907957|ref|ZP_07766940.1| ribonuclease R [Enterococcus faecalis DAPTO 512]
 gi|312978515|ref|ZP_07790253.1| ribonuclease R [Enterococcus faecalis DAPTO 516]
 gi|256951642|gb|EEU68274.1| 3'-5' exoribonuclease [Enterococcus faecalis Merz96]
 gi|291078572|gb|EFE15936.1| ribonuclease R [Enterococcus faecalis R712]
 gi|291083577|gb|EFE20540.1| ribonuclease R [Enterococcus faecalis S613]
 gi|310626048|gb|EFQ09331.1| ribonuclease R [Enterococcus faecalis DAPTO 512]
 gi|311288664|gb|EFQ67220.1| ribonuclease R [Enterococcus faecalis DAPTO 516]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|255975029|ref|ZP_05425615.1| 3'-5' exoribonuclease [Enterococcus faecalis T2]
 gi|307285538|ref|ZP_07565677.1| ribonuclease R [Enterococcus faecalis TX0860]
 gi|255967901|gb|EET98523.1| 3'-5' exoribonuclease [Enterococcus faecalis T2]
 gi|306502762|gb|EFM72027.1| ribonuclease R [Enterococcus faecalis TX0860]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|149193716|ref|ZP_01870814.1| RNA binding S1 [Caminibacter mediatlanticus TB-2]
 gi|149135669|gb|EDM24147.1| RNA binding S1 [Caminibacter mediatlanticus TB-2]
          Length = 386

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           +         +V  I +G + K ++ GAFV        L+     S ++  K SD+ + G
Sbjct: 232 KPAEEFAKKYKVGDIVEGVITKFINVGAFVEV-DGISVLMPNKFASFKKGEKASDIFEIG 290

Query: 668 DTVWVKLLDFD-DRGKIKLSMKVVDQNT 694
           D +  K++    +  K+ +S K    + 
Sbjct: 291 DKMEFKVITISPEENKVIVSRKDALPDP 318



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 14/125 (11%)

Query: 543 RLQLGEFTPRVEIMAIPPDQ----IRNVIGMGGKVIRGIVEQTGAKVN---IDDDG---- 591
           + ++ +   ++    +   +    + ++ G+ G V R   E    K++     D+G    
Sbjct: 75  KKEIEQLKDKIVNAKVLKVKPSGLVIDINGISGFVPRD--EIFYRKIDHKKYFDEGDEIE 132

Query: 592 -TVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHIS 650
             +      +  I+                   K  V  + D+GAFV      +G +HIS
Sbjct: 133 VILIDPDRRVFSIKKVLPNPWEEVKDLNPGDRIKVTVSHITDYGAFVDLGNGVEGFLHIS 192

Query: 651 QLSTE 655
           +++ +
Sbjct: 193 EINWD 197


>gi|47096836|ref|ZP_00234417.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|47014813|gb|EAL05765.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
          Length = 783

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 568 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 616

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 617 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 676

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 677 GDEVEVEVTKVD 688


>gi|296134182|ref|YP_003641429.1| ribonuclease R [Thermincola sp. JR]
 gi|296032760|gb|ADG83528.1| ribonuclease R [Thermincola potens JR]
          Length = 715

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 593 VKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           V+ +    A +EA RE   + +    + +V ++++G +  V  FG FV      +GLVHI
Sbjct: 598 VQSSERERAAMEAERESADLKKVEFMLDKVGQVFEGIISSVTSFGLFVELDNLVEGLVHI 657

Query: 650 SQLSTERVA-----------KTSDVVKEGDTVWVKLLDFDDRGK 682
           + L+ +               T  + + GD V V++   +   +
Sbjct: 658 TTLTDDFYEYDEENYRLVGQHTRKIYRIGDQVRVRVERVNPDER 701


>gi|296139345|ref|YP_003646588.1| Tex-like protein protein-like protein [Tsukamurella paurometabola
           DSM 20162]
 gi|296027479|gb|ADG78249.1| Tex-like protein protein-like protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 796

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
                 +   + +G V  V  FGAFV     +DGLVH+S +S   V+   +
Sbjct: 648 EKVSDLQPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHE 698


>gi|303228959|ref|ZP_07315769.1| ribonuclease R [Veillonella atypica ACS-134-V-Col7a]
 gi|302516373|gb|EFL58305.1| ribonuclease R [Veillonella atypica ACS-134-V-Col7a]
          Length = 779

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 22/221 (9%)

Query: 484 DHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESR 543
           +    M  KV         + +D     + ++I+             I+   S   ++  
Sbjct: 471 EEKMSMYQKVLNYLGQDIRLHLDELEPRVFQHILDAVKGTDIEQVAQIMTLRSMQQAKYS 530

Query: 544 LQLGEFTPR--------VEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKI 595
           +                   +   PD + + +                K    +   V  
Sbjct: 531 IDNAGHFGLASKCYTHFTSPIRRYPDLMVHRLLKADMGWPDGYANRDTKTEFLERAAVHS 590

Query: 596 ASSSLAEIEAARE---MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL 652
           +      + A R+   + ++   VP + ++++G++  +  FG FV      DGLVH++ +
Sbjct: 591 SEREQVAVAAERDTVDLKKTQYMVPFIGEVFEGKISSITSFGMFVELDNGIDGLVHMNMM 650

Query: 653 STERV-----------AKTSDVVKEGDTVWVKLLDFDDRGK 682
           + +              +T  +   GDTV V L+  D   +
Sbjct: 651 TDDYYFYDEEHFLLVGKRTGQIYHLGDTVTVTLVKADVEKR 691


>gi|315148591|gb|EFT92607.1| ribonuclease R [Enterococcus faecalis TX4244]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|225430430|ref|XP_002285435.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082105|emb|CBI21110.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 72/215 (33%), Gaps = 26/215 (12%)

Query: 299 QAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LGT 356
           +   ++  +    +R DGR   T R  + + G++ + +GS+    G T  I  V   LG 
Sbjct: 8   EKHFIQGGIAQD-LRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGK 66

Query: 357 REDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRL------------ 404
               Q         +    ++ +  P A       G         G L            
Sbjct: 67  PSPSQ-------PDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAG 119

Query: 405 ARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464
           A   +  ++    +  + L I   +  SDG+   A       AL + G+P    VA  A 
Sbjct: 120 AGIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIP-KVEVAVGAS 178

Query: 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG 499
           G   DG   + +SD    +     +   V  T  G
Sbjct: 179 G---DGLPEVDISDDEYLQFDTSGVPVIVTLTKVG 210



 Score = 39.1 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 14 RPLKLETGRIARQSDGAVLATYGETVVLATV 44
          RP  +ETG I  Q++G+     G T V+A+V
Sbjct: 31 RPFNVETGVI-PQANGSARVRLGGTDVIASV 60


>gi|298674036|ref|YP_003725786.1| phosphoesterase RecJ domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287024|gb|ADI72990.1| phosphoesterase RecJ domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 711

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 570 GGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
            G+ I    +  G  ++   D        + +++  A +      D  EV ++Y G V  
Sbjct: 72  KGRGIFYKCKVCGTSIDEPVDDEEICRVCAKSQVVYALDNS-CDLDEVEVGQLYHGIVDG 130

Query: 630 VMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKV 689
           +  FG FV+      GL+HI  L  E        +  GD V V + +    G + L  K 
Sbjct: 131 IAAFGVFVNLNAHIRGLIHIKNLKEE--------LDIGDPVIVYVKEIKSNGNVDLVPKN 182

Query: 690 VDQ 692
           + +
Sbjct: 183 IKE 185


>gi|126654057|ref|ZP_01725884.1| ribonuclease R [Bacillus sp. B14905]
 gi|126589462|gb|EAZ83608.1| ribonuclease R [Bacillus sp. B14905]
          Length = 731

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 22/131 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D  R  +   G  +  I + T      + +     A      ++ A+ M        
Sbjct: 488 INKDTSRETVAQWGMAMDEIADHTS-----ERERRAVDAERDTDALKKAQYMSD------ 536

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------AKTSDVVKE 666
           ++ + ++G V  + +FG FV      +GLVHIS ++ +              +T+   + 
Sbjct: 537 KIGEEFEGIVSSITNFGIFVELPNTIEGLVHISNMTDDYYRFDDRQMIMIGERTNRQFRI 596

Query: 667 GDTVWVKLLDF 677
           GD V V++ + 
Sbjct: 597 GDEVTVRVANV 607


>gi|227519698|ref|ZP_03949747.1| ribonuclease R [Enterococcus faecalis TX0104]
 gi|227072786|gb|EEI10749.1| ribonuclease R [Enterococcus faecalis TX0104]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTIEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|168041870|ref|XP_001773413.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675289|gb|EDQ61786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 287

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 91/270 (33%), Gaps = 36/270 (13%)

Query: 310 KKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT--LG-------TREDE 360
           + +R DGR     R+I+   G++ + +GSS    G T  +V V   LG       +    
Sbjct: 18  QNLRSDGRGRLDFRNIAITTGVIPQANGSSRCKVGGTDVMVSVKAELGNPPKGRPSHGGM 77

Query: 361 QYV----DSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQT 416
           Q       + +           +       E S +G P+    G G     +   ++   
Sbjct: 78  QIKVECSPTANPEFEGRGGEELSLELTRGLERSFLGGPN----GSGAAIDLSTLRIVDGK 133

Query: 417 AQFPYTLRIVS---EITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDF 473
                T  ++     +  SDG+   A       AL + G+P  + VAG      +D D  
Sbjct: 134 -----TCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLPKVEVVAG----GAEDEDPE 184

Query: 474 IILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533
           I + D    +  + +    +  T  G +     +      E+ M  A+  A   +  +  
Sbjct: 185 IEVDDEESSQLDVSNAPVIITLTKVGKSYF---VDATAEEESHMRSAVSVAVNRKGVVCG 241

Query: 534 EMSKV----LSESRLQLGEFTPRVEIMAIP 559
              +        + + +     ++ +  IP
Sbjct: 242 VTKRGGEGLEPSTIIDMISVAQQIALTYIP 271


>gi|253989176|ref|YP_003040532.1| ribonuclease E [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780626|emb|CAQ83788.1| rnase e, membrane attachment, mrna turnover, maturation 5s rna
           (rnas e) [Photorhabdus asymbiotica]
          Length = 1026

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAK--------- 659
            S     +   IYKG++ ++      AFV +   R G + I +++ E             
Sbjct: 30  ESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIKEIAREYFPNNYHPHGRPN 89

Query: 660 TSDVVKEGDTVWVKLLDFDDRG 681
             DV+KEG  V V++ D ++RG
Sbjct: 90  IKDVLKEGQEVIVQV-DKEERG 110


>gi|195502650|ref|XP_002098317.1| GE24021 [Drosophila yakuba]
 gi|194184418|gb|EDW98029.1| GE24021 [Drosophila yakuba]
          Length = 992

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 619 VNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
           + ++  G V  V  FGAFV     RDGL+H S ++  +       +  GD +   ++  D
Sbjct: 913 IGEVITGAVTNVTQFGAFVDVGVERDGLIHNSNMNDAQ-------LSIGDRIVASVVKVD 965

Query: 679 DRGKIKLSMKVVD 691
            + + +L +++ +
Sbjct: 966 LQRR-QLGLRLEN 977


>gi|313632054|gb|EFR99154.1| ribonuclease R [Listeria seeligeri FSL N1-067]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|282163022|ref|YP_003355407.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
           SANAE]
 gi|282155336|dbj|BAI60424.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
           SANAE]
          Length = 195

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 29/171 (16%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMG-GKVIRGIVEQTGAK--------VNIDDDGTVKIA 596
           +      V+I+ IPP ++   +     + IR  +E    K        ++I D G   I 
Sbjct: 1   MYRKVRLVDIIRIPPQRLEEDLEQVITETIRDKLEGRIDKALGSIVAVLDIVDIGEGHIL 60

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
               A          +I+  PE+ +I +GQVV+++ FGAFV      D LVH+SQ++ E 
Sbjct: 61  VGDGAVYYE--VTFDAISYRPELQEIVEGQVVEIVAFGAFVSVGP-IDCLVHVSQVADEF 117

Query: 657 V-----------AKTSDVVKEGDTVWVKLLDF-----DDRG-KIKLSMKVV 690
           +            ++S  + EGD+V  +++       D R  KI L+M+ V
Sbjct: 118 MSYDEKNSRLVSKESSKSLGEGDSVRARIVAVSLNEHDARESKIGLTMRQV 168


>gi|257081861|ref|ZP_05576222.1| 3'-5' exoribonuclease [Enterococcus faecalis E1Sol]
 gi|256989891|gb|EEU77193.1| 3'-5' exoribonuclease [Enterococcus faecalis E1Sol]
          Length = 789

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 595 IASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST 654
           +   ++        M ++   V +V + Y G +  V  FG FV      +GL+H++ L  
Sbjct: 613 MERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNTVEGLIHVNNLKQ 672

Query: 655 ERVAKTSDV-----------VKEGDTVWVKLLDFDDRGK 682
           +      +            +K G  V +++   D   +
Sbjct: 673 DYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETR 711


>gi|16804487|ref|NP_465972.1| hypothetical protein lmo2449 [Listeria monocytogenes EGD-e]
 gi|224503405|ref|ZP_03671712.1| hypothetical protein LmonFR_12987 [Listeria monocytogenes FSL
           R2-561]
 gi|16411937|emb|CAD00527.1| lmo2449 [Listeria monocytogenes EGD-e]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|312382157|gb|EFR27710.1| hypothetical protein AND_05250 [Anopheles darlingi]
          Length = 1857

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 634  GAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD 678
            G  + F    +G +HI  LS + V    + V+ G TV V++   D
Sbjct: 1245 GVRLRFDNGLNGFIHIKNLSDKHVKNPEERVQIGQTVHVRVTKID 1289


>gi|118442907|ref|YP_877499.1| ribonuclease R [Clostridium novyi NT]
 gi|118133363|gb|ABK60407.1| ribonuclease R [Clostridium novyi NT]
          Length = 745

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 14/104 (13%)

Query: 589 DDGTVKIASSSLAEIEAARE---MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDG 645
           D  +V+ +      +EA RE   + ++     ++ + Y G V  V +FG FV      +G
Sbjct: 588 DYASVQSSDMERLAMEAEREVDDLKKAEYMSEKIGEEYTGIVSSVTNFGMFVQLPNTIEG 647

Query: 646 LVHISQLSTERV-----------AKTSDVVKEGDTVWVKLLDFD 678
           LVHIS +  +              K  +V + GD V +K+   D
Sbjct: 648 LVHISTMDDDYYVYDEDHLCLVGEKHKNVYRLGDEVKIKVDRVD 691


>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
           fer1]
          Length = 260

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 94/252 (37%), Gaps = 33/252 (13%)

Query: 292 VSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVV 351
            +V  +I+   +   +     R+DGR  +  R+I      + +  GS++   G T+ +  
Sbjct: 6   SAVLSEIRKGFILESI-KTGKRLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVA- 63

Query: 352 VTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIH- 410
              G + +E               ++   LP A       G PS + I + R+  R I  
Sbjct: 64  ---GIKVEEGDP-FEDSPDSGVMALNIELLPMAFP-TFESGPPSEQAIEYSRVVDRGIRE 118

Query: 411 -------PVLPQTAQFPYTLRIVSEITESDGS------------SSMATVCGSSLALMDA 451
                   ++ ++ +  + + +  ++   DG+                 V  S +   D 
Sbjct: 119 SKMVDTSKLVIESGKRVWMIFVDIDVLNYDGNIIDAATLAAVTALKNTVVPASKIGQKDY 178

Query: 452 GVPISK-PVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIG 510
            +PI+  PV   ++ +VK GD+ +   D+  ++   G +   +A   +          IG
Sbjct: 179 SLPINATPV---SITMVKIGDEIVCDPDLEEEQVSNGRITVTIAEDHN--IHAMQKGDIG 233

Query: 511 GISENIMVMALQ 522
             S + +  A++
Sbjct: 234 EFSLDEIRKAIK 245


>gi|328950676|ref|YP_004368011.1| ribonuclease R [Marinithermus hydrothermalis DSM 14884]
 gi|328451000|gb|AEB11901.1| ribonuclease R [Marinithermus hydrothermalis DSM 14884]
          Length = 780

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 592 TVKIASSSLAEIEAAREM-----IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGL 646
            +   +S       A E       +         ++++G V  V +FG FV      +GL
Sbjct: 581 RIAEHASERERNAEAAERDLSKYYQCKWAEAHKGEVFEGTVSGVTNFGVFVALDNGVEGL 640

Query: 647 VHISQLSTERVAKTSDVVK-----------EGDTVWVKLLDFDD 679
           +H+S L+ +      + +             GD + V + + + 
Sbjct: 641 LHLSNLTDDYYEYVEEALALIGRHTNKRIGMGDRIKVAIDEVNP 684


>gi|182435433|ref|YP_001823152.1| putative ribosomal protein S1-like protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178463949|dbj|BAG18469.1| putative ribosomal protein S1-like protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 194

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 621 KIYKGQVVKVMDFGAFVHFCGARD-------GLVHISQLSTERVAKTSDVVKEGDTVWVK 673
            I  G V  +  FG FV              G + I +LS   +   +DVV+    V  +
Sbjct: 21  DILSGSVAAIERFGVFVALDDGPAHPLFPGVGFIVIPELSWRHIDAPTDVVQVDQRVACE 80

Query: 674 LLDFDDRG-KIKLSMKVVDQNT 694
            L FD    + +LS+K ++ + 
Sbjct: 81  FLQFDTYNAEARLSLKALEPDP 102



 Score = 46.8 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEG 667
           + +++  D   + +  +G V + + FGAFV       GL+ + +          +  + G
Sbjct: 101 DPLQAFADRTALGQELRGTVERTVSFGAFVDLGDGIVGLLPLREAHGRPATGPREDFEAG 160

Query: 668 DTVWVKLLDFD-DRGKIKLSM 687
           + + V +   D    ++ L+ 
Sbjct: 161 EEITVVVTKIDPPTRRVLLTR 181


>gi|290893673|ref|ZP_06556654.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556746|gb|EFD90279.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|167396187|ref|XP_001741945.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893254|gb|EDR21576.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 223

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 81/224 (36%), Gaps = 16/224 (7%)

Query: 322 VRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFL 381
           +R IS    +  ++ G  +F +G +  I  V      D    ++     R    +     
Sbjct: 14  IRSISYVRDVSSKSDGCYMFKQGKSCIISGV--NAPRDCPKREA--NPDRAVVKVE---- 65

Query: 382 PCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATV 441
                E        RR        +  +   +         + + ++I + DGS    T+
Sbjct: 66  ---VYERCSSFDSQRRT-ELEEFIKSGVEWTVISEQYPNGLINVCNQIVKDDGSIEAVTM 121

Query: 442 CGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG-I 500
             +  AL+ +GV +   V G+ +    D +  I +     D        F +  T  G I
Sbjct: 122 NAAMCALLFSGVDMKGIVVGMCVAGKIDNNGTIEIVIDPDDSISYKWKLFTIWDTIKGEI 181

Query: 501 TAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRL 544
            AM+M  K    S++ + M++  +K+  + ++  +  V+ +   
Sbjct: 182 VAMKMKGKC---SDDQLKMSMDISKKNAVKMVKAIKMVIEKQYP 222



 Score = 38.7 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 9   IEWAGRPLKLETGRI---------ARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPL 59
           +E   R + +E+G+I         + +SDG  +   G++ +++ V   R     ++  P 
Sbjct: 1   MEEDKRTI-IESGKIRSISYVRDVSSKSDGCYMFKQGKSCIISGVNAPRDC-PKREANPD 58

Query: 60  TVNYQERTYAVGKIPGGYLRRESRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQ 119
               +   Y          R E      E + S +    I   +     N    + N + 
Sbjct: 59  RAVVKVEVYERCSSFDSQRRTEL----EEFIKSGVEWTVISEQYPNGLIN----VCNQIV 110

Query: 120 HDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQV-DYING----QYVLNPRLDEDQG-S 173
            D + S   V+M AA  AL+ SG+  +G VVG  V   I+     + V++P         
Sbjct: 111 KD-DGSIEAVTMNAAMCALLFSGVDMKGIVVGMCVAGKIDNNGTIEIVIDPDDSISYKWK 169

Query: 174 LDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAIS 219
           L       +  ++ ++++    S+D +  ++         +++AI 
Sbjct: 170 LFTIWDTIKGEIVAMKMKGK-CSDDQLKMSMDISKKNAVKMVKAIK 214


>gi|254828024|ref|ZP_05232711.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254900413|ref|ZP_05260337.1| hypothetical protein LmonJ_11382 [Listeria monocytogenes J0161]
 gi|254913348|ref|ZP_05263360.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937729|ref|ZP_05269426.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|258600408|gb|EEW13733.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258610332|gb|EEW22940.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591353|gb|EFF99687.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|293368245|ref|ZP_06614874.1| ribonuclease R [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291317668|gb|EFE58085.1| ribonuclease R [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 197

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 590 DGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHI 649
           + T +    ++       E+ ++   +  +   ++G +  V +FG F+      +G+VHI
Sbjct: 6   EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI 65

Query: 650 SQLSTERV-----------AKTSDVVKEGDTVWVKLLDFDDRGKI 683
           + ++ +              + + V + GDTV VK+   D   ++
Sbjct: 66  ANMTDDYYHFDERQMALIGERQAKVFRIGDTVKVKVTHVDVEERM 110


>gi|284802888|ref|YP_003414753.1| hypothetical protein LM5578_2645 [Listeria monocytogenes 08-5578]
 gi|284996029|ref|YP_003417797.1| hypothetical protein LM5923_2594 [Listeria monocytogenes 08-5923]
 gi|284058450|gb|ADB69391.1| hypothetical protein LM5578_2645 [Listeria monocytogenes 08-5578]
 gi|284061496|gb|ADB72435.1| hypothetical protein LM5923_2594 [Listeria monocytogenes 08-5923]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|118472339|ref|YP_887159.1| transcriptional accessory protein [Mycobacterium smegmatis str. MC2
           155]
 gi|118173626|gb|ABK74522.1| transcriptional accessory protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 796

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 612 SITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSD 662
                 +   I +G V  V  FGAFV     +DGLVH+S ++   V+   +
Sbjct: 650 EKVADLKPGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRFVSDPHE 700


>gi|332522458|ref|ZP_08398710.1| ribonuclease R [Streptococcus porcinus str. Jelinkova 176]
 gi|332313722|gb|EGJ26707.1| ribonuclease R [Streptococcus porcinus str. Jelinkova 176]
          Length = 782

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQL-----STERV----- 657
            M ++      + + + G V  V+ FG FV      +GL+H++ L       ER      
Sbjct: 616 AMKKAEYMEEHIGETFDGIVSSVVKFGLFVELPNTIEGLIHVTSLPEYYNYNERTMTLQG 675

Query: 658 AKTSDVVKEGDTVWVKLLDFDD 679
            K+  V K G  + VKL+  D 
Sbjct: 676 EKSGKVFKVGQAIQVKLVKADK 697


>gi|217963449|ref|YP_002349127.1| ribonuclease R [Listeria monocytogenes HCC23]
 gi|217332719|gb|ACK38513.1| ribonuclease R [Listeria monocytogenes HCC23]
 gi|307571977|emb|CAR85156.1| ribonuclease R [Listeria monocytogenes L99]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|145603294|ref|XP_001404451.1| hypothetical protein MGG_13200 [Magnaporthe oryzae 70-15]
 gi|145011555|gb|EDJ96211.1| hypothetical protein MGG_13200 [Magnaporthe oryzae 70-15]
          Length = 314

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PE++      V ++ D GA+V        DG++ +S+LS  R+     +++ G    V +
Sbjct: 14  PEIDSFVMVNVKQIADMGAYVKLLEYDGIDGMILLSELSRRRIRSIQKLIRVGRNEVVVV 73

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           L  D ++G I LS + V Q 
Sbjct: 74  LRVDKEKGYIDLSKRRVSQE 93


>gi|227514413|ref|ZP_03944462.1| exoribonuclease R [Lactobacillus fermentum ATCC 14931]
 gi|227087279|gb|EEI22591.1| exoribonuclease R [Lactobacillus fermentum ATCC 14931]
          Length = 797

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 609 MIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST---ERVAKTSDVV- 664
           M ++      V + +   V  VM FG FV      +GL+HIS ++    E + K  D+V 
Sbjct: 621 MKKAEFMEDHVGETFDAVVSSVMKFGLFVALENTVEGLIHISVMNDDYYEYIEKHMDLVG 680

Query: 665 -------KEGDTVWVKLLDFDDRGK 682
                  + G  V VKLL  D   +
Sbjct: 681 RDHHHIFQIGQPVKVKLLRVDKDQR 705


>gi|224500109|ref|ZP_03668458.1| hypothetical protein LmonF1_10679 [Listeria monocytogenes Finland
           1988]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|330952676|gb|EGH52936.1| ribonuclease E [Pseudomonas syringae Cit 7]
          Length = 332

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAK-------TS 661
            S     +   IYKG++ ++      AFV F   R G + + ++S E   K         
Sbjct: 27  ESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIK 86

Query: 662 DVVKEGDTVWVKLLDFDDRG 681
           DV+ EG  V V++ + ++RG
Sbjct: 87  DVLSEGQEVIVQV-EKEERG 105


>gi|255028115|ref|ZP_05300066.1| hypothetical protein LmonL_00549 [Listeria monocytogenes LO28]
          Length = 741

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|323340208|ref|ZP_08080472.1| ribonuclease R [Lactobacillus ruminis ATCC 25644]
 gi|323092399|gb|EFZ35007.1| ribonuclease R [Lactobacillus ruminis ATCC 25644]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 608 EMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTE---RVAKTSDVV 664
            M ++      V + +   V  V  FG FV      +GL+HIS++  +    V K   +V
Sbjct: 628 AMKKAEYMADHVGEEFDAMVSSVTKFGMFVELDNTVEGLIHISEIGDDYYVFVEKHMALV 687

Query: 665 --------KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGKPIV 699
                   + G  V VKLLD + ++ +I   +  +D+     ++
Sbjct: 688 GRNKHKTYRIGQPVRVKLLDVNVEQKEINFKLLDLDKAPTSDLL 731


>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
           corporis]
 gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
           corporis]
          Length = 290

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 41/261 (15%)

Query: 308 LDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLS 367
           ++   R DGR     R I  +  ++   +GS+     +T  +V V     + E    ++ 
Sbjct: 18  VEDNFRYDGRTRSEYRPIEVETDVVSHANGSARLRLANTDILVGV-----KAEIVKPTIE 72

Query: 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLAR-------RAIHPVLPQTAQFP 420
              +       +    AT    + G           L R         +  +        
Sbjct: 73  NPDKGKIEFFVDCSANATPAFEKRGGEDLANDLSSALTRAYSAPESLDLKSLCILPKFQC 132

Query: 421 YTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKD----GDDF--- 473
           + L +   I E  G+   A   G   AL +  +P  + VA    G   +     D +   
Sbjct: 133 WKLYVDVLILECGGNLFDAVGLGVKAALRNTFIP--RVVAAALDGCDPELVISEDPYDCW 190

Query: 474 ------------------IILSDISGDEDHLGHMDFKVAGTDSGITAMQ--MDMKIGGIS 513
                               + D   +E+ +      V+     IT++       +  I+
Sbjct: 191 RLDTSKTPVFVTVMRIGDHCVVDPGAEEEAVSGGGLLVSYGSGSITSLLKISGGSLHPIT 250

Query: 514 ENIMVMALQQAKRGRLHILNE 534
              M+     A       L  
Sbjct: 251 LREMIQLGGSAGECLQDTLER 271


>gi|315304613|ref|ZP_07874850.1| ribonuclease R [Listeria ivanovii FSL F6-596]
 gi|313627019|gb|EFR95915.1| ribonuclease R [Listeria ivanovii FSL F6-596]
          Length = 475

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 260 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 308

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 309 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 368

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 369 GDEVEVEVTKVD 380


>gi|315283561|ref|ZP_07871719.1| ribonuclease R [Listeria marthii FSL S4-120]
 gi|313612791|gb|EFR86775.1| ribonuclease R [Listeria marthii FSL S4-120]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|293596314|ref|ZP_05230430.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293594672|gb|EFG02433.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 783

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 568 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 616

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 617 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 676

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 677 GDEVEVEVTKVD 688


>gi|254993184|ref|ZP_05275374.1| exoribonuclease RNase-R [Listeria monocytogenes FSL J2-064]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|254831128|ref|ZP_05235783.1| hypothetical protein Lmon1_07198 [Listeria monocytogenes 10403S]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|148670680|gb|EDL02627.1| mCG5813, isoform CRA_a [Mus musculus]
          Length = 174

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV  +    V  + + GA+V        +G++ +S+LS  R+   + +++ G    V +
Sbjct: 14  PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVV 73

Query: 675 LDFD-DRGKIKLSMKVVDQNTG 695
           +  D ++G I LS + V     
Sbjct: 74  IRVDKEKGYIDLSKRRVSPEEA 95


>gi|73667834|ref|YP_303849.1| DNA-directed RNA polymerase subunit E' [Methanosarcina barkeri str.
           Fusaro]
 gi|72394996|gb|AAZ69269.1| DNA-directed RNA polymerase, subunit E' [Methanosarcina barkeri
           str. Fusaro]
          Length = 194

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 18/97 (18%)

Query: 610 IRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV-----------A 658
             +I  VPE+ +I +G+VV+ + FG FV      DGL+H+SQ++ + +            
Sbjct: 72  FEAIMFVPELQEIIEGEVVETVGFGVFVGMGPM-DGLLHVSQITDDFISYDAKNARLVTK 130

Query: 659 KTSDVVKEGDTVWVKL--LDFDDRG----KIKLSMKV 689
                + EGD V  ++  +  ++R     KI L+M+ 
Sbjct: 131 NGGKSIAEGDHVRARVVAVSINEREPKESKIGLTMRQ 167


>gi|46908622|ref|YP_015011.1| ribonuclease R [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093651|ref|ZP_00231407.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
 gi|258611891|ref|ZP_05242896.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300765222|ref|ZP_07075207.1| ribonuclease R [Listeria monocytogenes FSL N1-017]
 gi|46881894|gb|AAT05188.1| putative ribonuclease R [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017986|gb|EAL08763.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
 gi|258606921|gb|EEW19529.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300514043|gb|EFK41105.1| ribonuclease R [Listeria monocytogenes FSL N1-017]
          Length = 783

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 568 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 616

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 617 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 676

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 677 GDEVEVEVTKVD 688


>gi|313617318|gb|EFR89753.1| ribonuclease R [Listeria innocua FSL S4-378]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|15292371|gb|AAK93454.1| LD47893p [Drosophila melanogaster]
          Length = 1422

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 632 DFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLS---- 686
             G  V       G +HI  LS  +V    + V+    + V+++  D DR  ++ S    
Sbjct: 820 PSGVRVRLENGLPGFIHIKNLSDRQVRNPEERVRVSQMIHVRIIKIDIDRFSVECSSRTA 879

Query: 687 -MKVVDQNTGKP 697
            +K V+ N  +P
Sbjct: 880 DLKDVN-NEWRP 890


>gi|289435709|ref|YP_003465581.1| ribonuclease R [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171953|emb|CBH28499.1| ribonuclease R [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 793

 Score = 49.5 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 IKGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|197287184|ref|YP_002153056.1| exoribonuclease R [Proteus mirabilis HI4320]
 gi|194684671|emb|CAR46613.1| ribonuclease R [Proteus mirabilis HI4320]
          Length = 829

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 81/266 (30%), Gaps = 37/266 (13%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           I   +A        +      + D   +E     M+ +    + G+T         G   
Sbjct: 464 ILANIAAARFVEKNEEPALYRVHDKPKEESV---MNLRSVFNELGLTLPGGLTPEPGDYA 520

Query: 515 NIMVMALQQAKRGRLHILNEMSKVL----SESRLQLGEFTPRVEIMAIPPDQIRN----- 565
            +M    ++     L  +   S        E+R   G           P  +  +     
Sbjct: 521 RVMKEVEERPDHEMLQTMVLRSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLALHR 580

Query: 566 -----VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS-----SLAEIEAAREMIRSITD 615
                +    G   +      G   ++D    +    S     +        + ++    
Sbjct: 581 AIKYQIAKQQGHGSQRWTPTGGYHSDMDTMLQLGEHCSLTERRADEATRDVADWLKCDFM 640

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERV-----------AKTSDV 663
           + ++ + + G +  V  FG FV       DGLVH+S L+ +               +  V
Sbjct: 641 LDQIGQQFTGIITSVTGFGFFVRLNDLFIDGLVHVSTLNNDYYQFDNVGQRLIGESSGQV 700

Query: 664 VKEGDTVWVKL--LDFDDRGKIKLSM 687
            + GD V VK+  +  D+R  I  S+
Sbjct: 701 YRLGDEVEVKVEAVSMDERT-IDFSL 725


>gi|20089605|ref|NP_615680.1| hypothetical protein MA0720 [Methanosarcina acetivorans C2A]
 gi|19914524|gb|AAM04160.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 311

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG-----------ARDGLVHISQLSTERVAKTSDV 663
           ++ +V  I  G++  V + GA V   G            R G +H+S +    V + SD 
Sbjct: 183 NILKVGDIVYGKITDVRESGAMVEVAGIEGKENREIVNTRPGDIHVSNVRDSYVKRLSDE 242

Query: 664 VKEGDTVWVKLLDFDDRGKIKLS 686
            +  D V  +++D D   +++L+
Sbjct: 243 FRPSDIVKARVIDVD---RMRLT 262


>gi|227357122|ref|ZP_03841491.1| exoribonuclease R [Proteus mirabilis ATCC 29906]
 gi|227162654|gb|EEI47621.1| exoribonuclease R [Proteus mirabilis ATCC 29906]
          Length = 829

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 81/266 (30%), Gaps = 37/266 (13%)

Query: 455 ISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISE 514
           I   +A        +      + D   +E     M+ +    + G+T         G   
Sbjct: 464 ILANIAAARFVEKNEEPALYRVHDKPKEESV---MNLRSVFNELGLTLPGGLTPEPGDYA 520

Query: 515 NIMVMALQQAKRGRLHILNEMSKVL----SESRLQLGEFTPRVEIMAIPPDQIRN----- 565
            +M    ++     L  +   S        E+R   G           P  +  +     
Sbjct: 521 RVMKEVEERPDHEMLQTMVLRSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLALHR 580

Query: 566 -----VIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASS-----SLAEIEAAREMIRSITD 615
                +    G   +      G   ++D    +    S     +        + ++    
Sbjct: 581 AIKYQIAKQQGHGSQRWTPTGGYHSDMDTMLQLGEHCSLTERRADEATRDVADWLKCDFM 640

Query: 616 VPEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERV-----------AKTSDV 663
           + ++ + + G +  V  FG FV       DGLVH+S L+ +               +  V
Sbjct: 641 LDQIGQQFTGIITSVTGFGFFVRLNDLFIDGLVHVSTLNNDYYQFDNVGQRLIGESSGQV 700

Query: 664 VKEGDTVWVKL--LDFDDRGKIKLSM 687
            + GD V VK+  +  D+R  I  S+
Sbjct: 701 YRLGDEVEVKVEAVSMDERT-IDFSL 725


>gi|33304498|gb|AAQ02666.1| translation initiation factor 2 alpha subunit [Leishmania donovani]
          Length = 319

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 607 REMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVV 664
           +++   +  +P++N +   ++ +V D  A V     G R+G++  ++++  RV     ++
Sbjct: 24  KDIPFYVETMPKINDVVWVKITQVNDTSAVVQLLEYGKREGIIPYTEVTRRRVRSMGKLI 83

Query: 665 KEGDTVWVKLLDFD-DRGKIKLSMKVVDQNTGK 696
           K G T   +++  D D+G I LS K+V  N  K
Sbjct: 84  KVGRTEPAQVIRIDKDKGYIDLSKKLVTPNEAK 116


>gi|330942729|gb|EGH45265.1| ribonuclease E [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 603

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAK-------TS 661
            S     +   IYKG++ ++      AFV F   R G + + ++S E   K         
Sbjct: 27  ESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIK 86

Query: 662 DVVKEGDTVWVKLLDFDDRG 681
           DV+ EG  V V++ + ++RG
Sbjct: 87  DVLSEGQEVIVQV-EKEERG 105


>gi|300711176|ref|YP_003736990.1| hypothetical protein HacjB3_09075 [Halalkalicoccus jeotgali B3]
 gi|299124859|gb|ADJ15198.1| hypothetical protein HacjB3_09075 [Halalkalicoccus jeotgali B3]
          Length = 684

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 623 YKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK 682
           Y+G V    DFG FV    +  GL+H S+L   R+        EGDTV+V++    D G 
Sbjct: 41  YQGTVDGFADFGVFVDIGDSVTGLLHRSELD-RRLESLD--WDEGDTVYVQVTGVQDNGN 97

Query: 683 IKLS 686
           + LS
Sbjct: 98  VDLS 101


>gi|242022826|ref|XP_002431839.1| eukaryotic translation initiation factor 2 subunit alpha, putative
           [Pediculus humanus corporis]
 gi|212517171|gb|EEB19101.1| eukaryotic translation initiation factor 2 subunit alpha, putative
           [Pediculus humanus corporis]
          Length = 343

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV+ +    V  + + GA+VH       +G++ +S+LS  R+   + +++ G T  V +
Sbjct: 13  PEVDDVVMVNVRSIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVV 72

Query: 675 LDFD-DRGKIKLSMKVVDQN 693
           +  D D+G I LS + V   
Sbjct: 73  IRVDKDKGYIDLSKRRVSPE 92


>gi|16801605|ref|NP_471873.1| hypothetical protein lin2543 [Listeria innocua Clip11262]
 gi|16415065|emb|CAC97770.1| lin2543 [Listeria innocua Clip11262]
          Length = 793

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 558 IPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP 617
           I  D     +    + +  I E +            K+   ++       E+ ++   V 
Sbjct: 578 INGDVRPETLEKRAEELPEIAEHSS-----------KMERRAVEAERETDELKKTEFMVD 626

Query: 618 EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVA-----------KTSDVVKE 666
           +V + + G +  V +FG F+      +GLVH+S +  +              +T  + + 
Sbjct: 627 KVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRI 686

Query: 667 GDTVWVKLLDFD 678
           GD V V++   D
Sbjct: 687 GDEVEVEVTKVD 698


>gi|330877843|gb|EGH11992.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 504

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 611 RSITDVPEVNKIYKGQVVKVMDF--GAFVHFCGARDGLVHISQLSTERVAK-------TS 661
            S     +   IYKG++ ++      AFV F   R G + + ++S E   K         
Sbjct: 27  ESGAREQKKANIYKGRITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIK 86

Query: 662 DVVKEGDTVWVKLLDFDDRG 681
           DV+ EG  V V++ + ++RG
Sbjct: 87  DVLSEGQEVIVQV-EKEERG 105


>gi|20092492|ref|NP_618567.1| DNA-directed RNA polymerase subunit E' [Methanosarcina acetivorans
           C2A]
 gi|19917756|gb|AAM07047.1| DNA-directed RNA polymerase, subunit E [Methanosarcina acetivorans
           C2A]
          Length = 194

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 546 LGEFTPRVEIMAIPPDQIRNVIGMGGKV-IRGIVEQTGAK--------VNIDDDGTVKIA 596
           + +    ++ + IPP  +   I    K  +R  +E    K         NID+ G   I 
Sbjct: 1   MYKLMKLIDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHIL 60

Query: 597 SSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTER 656
               A          +I  +PE+ +I +G+VV+ + FG FV      DGL+H+SQ++ + 
Sbjct: 61  VGDGAVYY--DVTFEAIMFIPELQEIIEGEVVEAVGFGVFVGMGPM-DGLLHVSQITDDF 117

Query: 657 V-----------AKTSDVVKEGDTVWVKL--LDFDDRG----KIKLSMKV 689
           +                 + EGD V  ++  +  ++R     KI L+M+ 
Sbjct: 118 ISYDAKNARLVTKNGGKSIAEGDHVRARIVAVSINEREPKESKIGLTMRQ 167


>gi|50545663|ref|XP_500370.1| YALI0B01034p [Yarrowia lipolytica]
 gi|49646236|emb|CAG82584.1| YALI0B01034p [Yarrowia lipolytica]
          Length = 313

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 617 PEVNKIYKGQVVKVMDFGAFVHFC--GARDGLVHISQLSTERVAKTSDVVKEGDTVWVKL 674
           PEV+ +    V ++ D GA+V        +G++ +S+LS  R+      +K G    V +
Sbjct: 17  PEVDDLVMVNVKEIADMGAYVKLLEYDDIEGMILLSELSRRRIRSIQKHIKVGKNEIVVV 76

Query: 675 LDFD-DRGKIKLSMKVV 690
           L  D D+G I LS + V
Sbjct: 77  LRVDKDKGYIDLSKRRV 93


>gi|257053992|ref|YP_003131825.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorhabdus
           utahensis DSM 12940]
 gi|256692755|gb|ACV13092.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorhabdus
           utahensis DSM 12940]
          Length = 730

 Score = 49.1 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 601 AEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKT 660
            E +A  E   S  D     + Y+G V    +FG FV    +  GL+H S+L   R+   
Sbjct: 19  HEEDAVFEFRGSTPDELTPGRYYRGTVDGFAEFGVFVDIGDSVTGLLHESELD-SRLESL 77

Query: 661 SDVVKEGDTVWVKLLDFDDRGKIKLS 686
           S   + GDTV+V++ +  D G + LS
Sbjct: 78  S--WQPGDTVYVRVTNVRDNGNVDLS 101


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.149    0.403 

Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,926,659,899
Number of Sequences: 14124377
Number of extensions: 590501701
Number of successful extensions: 2192040
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 17097
Number of HSP's successfully gapped in prelim test: 10156
Number of HSP's that attempted gapping in prelim test: 2041499
Number of HSP's gapped (non-prelim): 75828
length of query: 699
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 553
effective length of database: 2,780,634,588
effective search space: 1537690927164
effective search space used: 1537690927164
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 85 (37.2 bits)